Table S21: Segmented copynumber ratios									
									
Sample	ChromNum	SegStart	SegEnd	NumProbes	Log2CNRatio	SegCall	SegIsFocal	NumGenes	Genes
TCGA.A6.6651	1	564620	761731	4	0.8008	LARGE-GAIN	FOCAL	3	"OR4F16,OR4F29,OR4F3"
TCGA.AA.A01Q.01A	1	905645	909621	5	0.8827	LARGE-GAIN	FOCAL	1	PLEKHN1
TCGA.AM.5820	1	918572	1018703	10	1.4822	LARGE-GAIN	FOCAL	5	"AGRN,C1orf159,HES4,ISG15,RNF223"
TCGA.AM.5820	1	1039097	1165309	11	0.6874	LARGE-GAIN	FOCAL	5	"C1orf159,SDF4,TNFRSF18,TNFRSF4,TTLL10"
TCGA.AA.A00Z.01A	1	1167617	1244516	6	3.5684	LARGE-GAIN	FOCAL	6	"ACAP3,B3GALT6,FAM132A,PUSL1,SCNN1D,UBE2J2"
TCGA.AA.A01Q.01A	1	1167617	1254195	19	0.7678	LARGE-GAIN	FOCAL	7	"ACAP3,B3GALT6,CPSF3L,FAM132A,PUSL1,SCNN1D,UBE2J2"
TCGA.AG.A01W.01A	1	1251257	1256568	5	1.0361	LARGE-GAIN	FOCAL	1	CPSF3L
TCGA.AA.3862.01A	1	1576342	1684951	26	0.9713	LARGE-GAIN	FOCAL	5	"CDK11A,CDK11B,NADK,SLC35E2,SLC35E2B"
TCGA.G4.6310	1	3220100	3222333	5	0.7404	LARGE-GAIN	FOCAL	1	PRDM16
TCGA.AA.A01Q.01A	1	3385958	3477230	5	0.7648	LARGE-GAIN	FOCAL	2	"ARHGEF16,MEGF6"
TCGA.AG.3891.01A	1	3761783	3775232	5	0.8295	LARGE-GAIN	FOCAL	2	"CEP104,DFFB"
TCGA.DM.A28H	1	4055279	4145614	39	1.0784	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28H	1	4859487	4867751	5	0.7849	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	1	5934541	6012712	16	0.7273	LARGE-GAIN	FOCAL	1	NPHP4
TCGA.AG.3906.01A	1	6291925	6314593	6	0.9512	LARGE-GAIN	FOCAL	3	"GPR153,HES3,ICMT"
TCGA.AA.3982	1	6505670	6567248	6	1.0334	LARGE-GAIN	FOCAL	3	"ESPN,PLEKHG5,TNFRSF25"
TCGA.AG.A016.01A	1	6634664	6648800	11	0.7062	LARGE-GAIN	FOCAL	2	"TAS1R1,ZBTB48"
TCGA.AA.3930.01A	1	6696125	6697251	2	1.9188	LARGE-GAIN	FOCAL	1	DNAJC11
TCGA.AG.3891.01A	1	9630269	9642315	4	1.125	LARGE-GAIN	FOCAL	1	SLC25A33
TCGA.AG.3891.01A	1	9990386	10068194	12	0.8742	LARGE-GAIN	FOCAL	3	"LZIC,NMNAT1,RBP7"
TCGA.AA.A010.01A	1	10510094	10659253	12	0.9064	LARGE-GAIN	FOCAL	4	"APITD1-CORT,CORT,DFFA,PEX14"
TCGA.AG.A036.01A	1	10633272	10633574	2	1.9135	LARGE-GAIN	FOCAL	1	PEX14
TCGA.AA.A010.01A	1	11181253	11269322	28	0.7659	LARGE-GAIN	FOCAL	2	"ANGPTL7,MTOR"
TCGA.AA.3930.01A	1	11188871	11199313	6	0.8336	LARGE-GAIN	FOCAL	1	MTOR
TCGA.AA.A00N.01A	1	11189753	11269322	19	1.0892	LARGE-GAIN	FOCAL	2	"ANGPTL7,MTOR"
TCGA.AA.3861.01A	1	11832138	11847898	9	1.8053	LARGE-GAIN	FOCAL	2	"C1orf167,MTHFR"
TCGA.AA.3862.01A	1	11832138	11851217	15	1.1605	LARGE-GAIN	FOCAL	2	"C1orf167,MTHFR"
TCGA.AG.3891.01A	1	11980281	11985210	3	1.2132	LARGE-GAIN	FOCAL	1	KIAA2013
TCGA.AG.3906.01A	1	11980281	12007979	5	0.8938	LARGE-GAIN	FOCAL	2	"KIAA2013,PLOD1"
TCGA.AA.A010.01A	1	12123587	12202295	14	1.0237	LARGE-GAIN	FOCAL	1	TNFRSF8
TCGA.AA.A00N.01A	1	12144468	12202295	13	1.1955	LARGE-GAIN	FOCAL	1	TNFRSF8
TCGA.AA.A00N.01A	1	12328716	12721737	65	0.6957	LARGE-GAIN	FOCAL	3	"AADACL4,DHRS3,VPS13D"
TCGA.AG.3909.01A	1	12820673	12943106	18	0.7936	LARGE-GAIN	FOCAL	9	"C1orf158,HNRNPCL1,HNRNPCL3,HNRNPCL4,PRAMEF1,PRAMEF11,PRAMEF12,PRAMEF2,PRAMEF4"
TCGA.AA.A010.01A	1	15361207	15700946	44	0.7131	LARGE-GAIN	FOCAL	4	"C1orf195,FHAD1,KAZN,TMEM51"
TCGA.AA.A010.01A	1	15764884	15850515	32	0.6814	LARGE-GAIN	FOCAL	4	"CASP9,CELA2A,CELA2B,CTRC"
TCGA.AA.A010.01A	1	16693682	16767205	17	1.0511	LARGE-GAIN	FOCAL	3	"NECAP2,SPATA21,SZRD1"
TCGA.AA.A00N.01A	1	16719683	16770088	16	0.8148	LARGE-GAIN	FOCAL	3	"NECAP2,SPATA21,SZRD1"
TCGA.A6.3808.01A	1	16735566	16767205	8	2.9516	LARGE-GAIN	FOCAL	2	"NECAP2,SPATA21"
TCGA.CK.5914.01A	1	16890448	16918425	9	1.2358	LARGE-GAIN	FOCAL	1	NBPF1
TCGA.AA.3861.01A	1	16890448	17320073	35	1.3062	LARGE-GAIN	FOCAL	6	"ATP13A2,CROCC,FAM231A,MFAP2,MST1L,NBPF1"
TCGA.AA.3862.01A	1	16890448	17320073	39	1.0469	LARGE-GAIN	FOCAL	6	"ATP13A2,CROCC,FAM231A,MFAP2,MST1L,NBPF1"
TCGA.AA.3930.01A	1	17316144	17320073	4	1.2028	LARGE-GAIN	FOCAL	1	ATP13A2
TCGA.AA.A00N.01A	1	17380392	17701862	65	1.1049	LARGE-GAIN	FOCAL	6	"PADI1,PADI2,PADI3,PADI4,PADI6,SDHB"
TCGA.AA.A010.01A	1	17380392	17701862	65	0.9588	LARGE-GAIN	FOCAL	6	"PADI1,PADI2,PADI3,PADI4,PADI6,SDHB"
TCGA.AG.A01J.01A	1	17685312	17685727	2	5.1779	LARGE-GAIN	FOCAL	1	PADI4
TCGA.AA.A00N.01A	1	17913913	18704686	41	0.8231	LARGE-GAIN	FOCAL	3	"ACTL8,ARHGEF10L,IGSF21"
TCGA.AA.A010.01A	1	17913913	18808854	44	0.8905	LARGE-GAIN	FOCAL	4	"ACTL8,ARHGEF10L,IGSF21,KLHDC7A"
TCGA.AG.3891.01A	1	18960780	18962684	3	0.8176	LARGE-GAIN	FOCAL	1	PAX7
TCGA.AA.A00N.01A	1	19412602	19513651	82	1.0525	LARGE-GAIN	FOCAL	1	UBR4
TCGA.AA.A00N.01A	1	20009491	20208979	15	0.7651	LARGE-GAIN	FOCAL	3	"OTUD3,RNF186,TMCO4"
TCGA.AA.A010.01A	1	20063807	20082076	7	0.9334	LARGE-GAIN	FOCAL	1	TMCO4
TCGA.CK.5914.01A	1	20411242	20469892	11	0.8422	LARGE-GAIN	FOCAL	3	"PLA2G2D,PLA2G2F,PLA2G5"
TCGA.AA.A00N.01A	1	20411242	20474636	13	1.5392	LARGE-GAIN	FOCAL	3	"PLA2G2D,PLA2G2F,PLA2G5"
TCGA.AG.3891.01A	1	21094026	21154073	12	0.8103	LARGE-GAIN	FOCAL	2	"EIF4G3,HP1BP3"
TCGA.AG.3906.01A	1	21106787	21143858	5	1.0602	LARGE-GAIN	FOCAL	2	"EIF4G3,HP1BP3"
TCGA.CK.5914.01A	1	21795132	21806582	9	0.7559	LARGE-GAIN	FOCAL	1	NBPF3
TCGA.AG.A036.01A	1	22046385	22046721	2	1.9423	LARGE-GAIN	FOCAL	1	USP48
TCGA.CK.5914.01A	1	22303458	22336168	14	0.7343	LARGE-GAIN	FOCAL	2	"CELA3A,CELA3B"
TCGA.AG.3909.01A	1	22303458	22338850	14	1.0484	LARGE-GAIN	FOCAL	2	"CELA3A,CELA3B"
TCGA.AZ.4684.01A	1	24287940	24294113	2	1.532	LARGE-GAIN	FOCAL	2	"PNRC2,SRSF10"
TCGA.AA.A010.01A	1	24389904	24784176	76	0.6839	LARGE-GAIN	FOCAL	6	"GRHL3,IFNLR1,IL22RA1,MYOM3,NIPAL3,STPG1"
TCGA.AA.A00N.01A	1	24402612	24495860	32	0.694	LARGE-GAIN	FOCAL	3	"IFNLR1,IL22RA1,MYOM3"
TCGA.AA.A010.01A	1	24921864	24969730	4	0.8756	LARGE-GAIN	FOCAL	2	"NCMAP,SRRM1"
TCGA.AA.3862.01A	1	24975300	25228571	22	1.2033	LARGE-GAIN	FOCAL	3	"CLIC4,RUNX3,SRRM1"
TCGA.AA.3861.01A	1	24976433	25167217	20	1.2266	LARGE-GAIN	FOCAL	2	"CLIC4,SRRM1"
TCGA.CK.5914.01A	1	25611012	25633057	6	1.1172	LARGE-GAIN	FOCAL	1	RHD
TCGA.AA.A00N.01A	1	25696908	25735125	8	0.8231	LARGE-GAIN	FOCAL	1	RHCE
TCGA.AA.A010.01A	1	27022853	27087840	6	0.7344	LARGE-GAIN	FOCAL	1	ARID1A
TCGA.AG.3906.01A	1	27673902	27700387	26	0.7399	LARGE-GAIN	FOCAL	3	"FCN3,MAP3K6,SYTL1"
TCGA.AA.A00N.01A	1	31212608	31478658	26	0.9769	LARGE-GAIN	FOCAL	3	"LAPTM5,PUM1,SDC3"
TCGA.AG.3906.01A	1	32221549	32224836	3	1.4653	LARGE-GAIN	FOCAL	1	ADGRB2
TCGA.AA.A00N.01A	1	32508078	32573635	11	0.6881	LARGE-GAIN	FOCAL	2	"KHDRBS1,TMEM39B"
TCGA.AA.A010.01A	1	32538550	32573635	10	1.4191	LARGE-GAIN	FOCAL	1	TMEM39B
TCGA.AG.3906.01A	1	33318622	33413796	19	0.9214	LARGE-GAIN	FOCAL	5	"FNDC5,HPCA,RNF19B,S100PBP,TMEM54"
TCGA.AA.A00N.01A	1	33998613	34498155	65	1.2119	LARGE-GAIN	FOCAL	2	"CSMD2,HMGB4"
TCGA.AA.A010.01A	1	34090067	34098971	4	1.9452	LARGE-GAIN	FOCAL	1	CSMD2
TCGA.AA.A010.01A	1	34100763	34554527	32	0.6787	LARGE-GAIN	FOCAL	2	"CSMD2,HMGB4"
TCGA.AA.A00N.01A	1	34662778	35226805	9	0.7183	LARGE-GAIN	FOCAL	3	"C1orf94,GJB4,GJB5"
TCGA.CK.5914.01A	1	35657782	35790902	3	0.9137	LARGE-GAIN	FOCAL	2	"SFPQ,ZMYM4"
TCGA.AA.A00N.01A	1	35657782	35972185	49	0.686	LARGE-GAIN	FOCAL	3	"KIAA0319L,SFPQ,ZMYM4"
TCGA.AZ.4684.01A	1	35790902	35827212	4	1.7757	LARGE-GAIN	FOCAL	1	ZMYM4
TCGA.AG.3906.01A	1	36019919	36056235	12	0.6815	LARGE-GAIN	FOCAL	3	"KIAA0319L,NCDN,TFAP2E"
TCGA.AA.A010.01A	1	36492687	36509001	6	0.8961	LARGE-GAIN	FOCAL	1	AGO3
TCGA.AG.3906.01A	1	36602756	36645758	10	1.2763	LARGE-GAIN	FOCAL	2	"MAP7D1,TRAPPC3"
TCGA.AA.A010.01A	1	36915831	37346184	35	1.0131	LARGE-GAIN	FOCAL	4	"CSF3R,GRIK3,MRPS15,OSCP1"
TCGA.AA.A00N.01A	1	36935246	37356494	22	0.9259	LARGE-GAIN	FOCAL	2	"CSF3R,GRIK3"
TCGA.AG.3909.01A	1	37307320	37356494	9	0.7015	LARGE-GAIN	FOCAL	1	GRIK3
TCGA.AA.A00N.01A	1	38183996	38200882	11	1.0637	LARGE-GAIN	FOCAL	1	EPHA10
TCGA.AG.3906.01A	1	38227118	38283023	9	1.1229	LARGE-GAIN	FOCAL	5	"C1orf122,EPHA10,MANEAL,MTF1,YRDC"
TCGA.AA.A010.01A	1	38397200	38434974	9	0.7894	LARGE-GAIN	FOCAL	2	"INPP5B,SF3A3"
TCGA.AA.3939.01A	1	38488321	38489172	2	2.0179	LARGE-GAIN	FOCAL	1	UTP11L
TCGA.AG.3891.01A	1	39785288	39788543	3	0.8016	LARGE-GAIN	FOCAL	1	MACF1
TCGA.CK.5914.01A	1	39916692	39918318	3	0.965	LARGE-GAIN	FOCAL	1	MACF1
TCGA.AG.3906.01A	1	39945448	39951252	3	0.7773	LARGE-GAIN	FOCAL	1	MACF1
TCGA.AG.A00Y.01A	1	40033372	40035494	4	4.3361	LARGE-GAIN	FOCAL	1	PABPC4
TCGA.AG.3906.01A	1	40034424	40098267	9	1.0796	LARGE-GAIN	FOCAL	2	"HEYL,PABPC4"
TCGA.AA.A010.01A	1	41092157	41204479	7	0.8399	LARGE-GAIN	FOCAL	2	"NFYC,RIMS3"
TCGA.CK.5914.01A	1	41503004	41608518	8	1.012	LARGE-GAIN	FOCAL	1	SCMH1
TCGA.AA.A00N.01A	1	41512032	41608518	7	1.4467	LARGE-GAIN	FOCAL	1	SCMH1
TCGA.AA.A02K.01A	1	41976085	41990358	5	0.8641	LARGE-GAIN	FOCAL	1	HIVEP3
TCGA.AA.A00N.01A	1	42041165	42880138	26	0.7706	LARGE-GAIN	FOCAL	5	"FOXJ3,GUCA2A,GUCA2B,HIVEP3,RIMKLA"
TCGA.AU.6004	1	43051831	43076653	10	1.122	LARGE-GAIN	FOCAL	1	CCDC30
TCGA.AG.A00Y.01A	1	43223405	43224821	3	3.9626	LARGE-GAIN	FOCAL	1	P3H1
TCGA.AA.A010.01A	1	43424227	43652341	18	0.8519	LARGE-GAIN	FOCAL	4	"CFAP57,EBNA1BP2,FAM183A,SLC2A1"
TCGA.AA.A010.01A	1	43687727	43708851	7	0.8769	LARGE-GAIN	FOCAL	1	CFAP57
TCGA.A6.3808.01A	1	43775008	43818141	24	1.2336	LARGE-GAIN	FOCAL	2	"MPL,TIE1"
TCGA.AG.3906.01A	1	43824858	43831206	9	0.9625	LARGE-GAIN	FOCAL	2	"CDC20,ELOVL1"
TCGA.AA.A01C.01A	1	44157147	44157858	2	1.7568	LARGE-GAIN	FOCAL	1	KDM4A
TCGA.AG.3906.01A	1	44386044	44436587	18	0.7745	LARGE-GAIN	FOCAL	4	"ARTN,DPH2,IPO13,ST3GAL3"
TCGA.AG.3906.01A	1	44437010	44443565	6	1.5237	LARGE-GAIN	FOCAL	2	"ATP6V0B,DPH2"
TCGA.AG.3906.01A	1	44447309	44459496	6	0.8043	LARGE-GAIN	FOCAL	2	"B4GALT2,CCDC24"
TCGA.AA.A010.01A	1	44584519	44820514	22	0.8057	LARGE-GAIN	FOCAL	3	"DMAP1,ERI3,KLF17"
TCGA.AF.3914.01A	1	44685036	44685433	2	2.7206	LARGE-GAIN	FOCAL	1	DMAP1
TCGA.AF.3914.01A	1	45251729	45253014	3	1.4788	LARGE-GAIN	FOCAL	1	BEST4
TCGA.AG.3906.01A	1	45323325	45362970	6	1.4197	LARGE-GAIN	FOCAL	1	EIF2B3
TCGA.AG.3906.01A	1	46179890	46195238	5	1.233	LARGE-GAIN	FOCAL	1	IPP
TCGA.AA.A00N.01A	1	46494393	46501098	11	1.4	LARGE-GAIN	FOCAL	1	MAST2
TCGA.AA.A010.01A	1	46494393	46501098	11	1.2626	LARGE-GAIN	FOCAL	1	MAST2
TCGA.AA.3930.01A	1	46497822	46498217	2	1.0277	LARGE-GAIN	FOCAL	1	MAST2
TCGA.AG.A02X.01A	1	46499426	46499748	2	4.9698	LARGE-GAIN	FOCAL	1	MAST2
TCGA.AF.3914.01A	1	46499426	46500196	3	1.1685	LARGE-GAIN	FOCAL	1	MAST2
TCGA.AG.3906.01A	1	46649831	46715622	20	0.948	LARGE-GAIN	FOCAL	4	"LURAP1,POMGNT1,RAD54L,TSPAN1"
TCGA.AA.A010.01A	1	47181956	47498865	27	0.7917	LARGE-GAIN	FOCAL	4	"CYP4A11,CYP4B1,CYP4X1,EFCAB14"
TCGA.CK.5914.01A	1	47264732	47406872	21	1.0556	LARGE-GAIN	FOCAL	2	"CYP4A11,CYP4B1"
TCGA.AA.A00N.01A	1	47264732	47489453	22	1.7996	LARGE-GAIN	FOCAL	3	"CYP4A11,CYP4B1,CYP4X1"
TCGA.AA.A00N.01A	1	47512087	47655490	27	1.3793	LARGE-GAIN	FOCAL	4	"CYP4A22,CYP4X1,CYP4Z1,PDZK1IP1"
TCGA.CK.5914.01A	1	47512087	47655490	27	0.919	LARGE-GAIN	FOCAL	4	"CYP4A22,CYP4X1,CYP4Z1,PDZK1IP1"
TCGA.AA.3862.01A	1	47547969	47610031	15	1.2289	LARGE-GAIN	FOCAL	2	"CYP4A22,CYP4Z1"
TCGA.AA.A010.01A	1	47606414	47655490	12	0.7522	LARGE-GAIN	FOCAL	2	"CYP4A22,PDZK1IP1"
TCGA.AA.A00N.01A	1	48688367	48712956	14	1.5121	LARGE-GAIN	FOCAL	1	SLC5A9
TCGA.AG.3909.01A	1	48688367	48712956	14	0.8192	LARGE-GAIN	FOCAL	1	SLC5A9
TCGA.CK.5914.01A	1	48688367	48712956	14	1.2726	LARGE-GAIN	FOCAL	1	SLC5A9
TCGA.AY.5543	1	51149662	51174329	3	1.8431	LARGE-GAIN	FOCAL	1	FAF1
TCGA.AA.A010.01A	1	51864677	51873758	6	0.7058	LARGE-GAIN	FOCAL	1	EPS15
TCGA.AA.A010.01A	1	53370289	53393013	7	1.2645	LARGE-GAIN	FOCAL	2	"ECHDC2,SCP2"
TCGA.AG.3906.01A	1	53720727	53932205	16	0.7427	LARGE-GAIN	FOCAL	2	"DMRTB1,LRP8"
TCGA.AA.A00N.01A	1	54518641	54640243	10	1.059	LARGE-GAIN	FOCAL	4	"CDCP2,CYB5RL,TCEANC2,TMEM59"
TCGA.AG.3906.01A	1	54867479	54870481	3	1.1689	LARGE-GAIN	FOCAL	1	SSBP3
TCGA.AA.A00N.01A	1	55013913	55167711	43	1.1321	LARGE-GAIN	FOCAL	3	"ACOT11,FAM151A,MROH7"
TCGA.AA.A010.01A	1	55013913	55183124	50	0.9034	LARGE-GAIN	FOCAL	4	"ACOT11,FAM151A,MROH7,TTC4"
TCGA.AG.3909.01A	1	55050301	55167711	41	0.7563	LARGE-GAIN	FOCAL	3	"ACOT11,FAM151A,MROH7"
TCGA.A6.3808.01A	1	55062954	55088920	18	1.3196	LARGE-GAIN	FOCAL	2	"ACOT11,FAM151A"
TCGA.CK.5914.01A	1	55078112	55167711	24	0.9551	LARGE-GAIN	FOCAL	3	"ACOT11,FAM151A,MROH7"
TCGA.AA.A00N.01A	1	55282623	55319678	5	0.7847	LARGE-GAIN	FOCAL	2	"C1orf177,DHCR24"
TCGA.AA.A010.01A	1	55317866	55528993	28	0.7117	LARGE-GAIN	FOCAL	4	"BSND,DHCR24,PCSK9,TMEM61"
TCGA.AZ.4684.01A	1	55567210	57219469	63	1.1507	LARGE-GAIN	FOCAL	4	"C1orf168,PPAP2B,PRKAA2,USP24"
TCGA.AA.A010.01A	1	55569520	55595101	10	0.6893	LARGE-GAIN	FOCAL	1	USP24
TCGA.CA.6719	1	55790860	56166507	224	0.7655	LARGE-GAIN	FOCAL	0	None
TCGA.CA.6719	1	56421021	57158292	313	0.8053	LARGE-GAIN	FOCAL	2	"PPAP2B,PRKAA2"
TCGA.A6.3808.01A	1	57185624	57221484	11	2.5072	LARGE-GAIN	FOCAL	1	C1orf168
TCGA.AZ.4684.01A	1	57221484	59126820	55	0.8199	LARGE-GAIN	FOCAL	7	"C1orf168,C8A,C8B,DAB1,MYSM1,OMA1,TACSTD2"
TCGA.A6.3808.01A	1	57224306	60314708	100	0.7871	LARGE-GAIN	FOCAL	10	"C1orf168,C8A,C8B,DAB1,FGGY,HOOK1,JUN,MYSM1,OMA1,TACSTD2"
TCGA.AA.A00N.01A	1	57233454	57489155	32	1.141	LARGE-GAIN	FOCAL	4	"C1orf168,C8A,C8B,DAB1"
TCGA.AZ.4684.01A	1	60287475	60336652	19	1.1668	LARGE-GAIN	FOCAL	1	HOOK1
TCGA.AA.3509.01A	1	60309067	60314708	3	1.6137	LARGE-GAIN	FOCAL	1	HOOK1
TCGA.DM.A28M.01A	1	60312669	60314708	3	2.5885	LARGE-GAIN	FOCAL	1	HOOK1
TCGA.AA.A00N.01A	1	60313970	60370537	15	0.837	LARGE-GAIN	FOCAL	2	"CYP2J2,HOOK1"
TCGA.A6.3808.01A	1	60336652	60538180	21	0.7407	LARGE-GAIN	FOCAL	3	"C1orf87,CYP2J2,HOOK1"
TCGA.AA.A00N.01A	1	60475995	61331014	9	0.9515	LARGE-GAIN	FOCAL	1	C1orf87
TCGA.AG.3594	1	62673816	62708338	16	1.0399	LARGE-GAIN	FOCAL	2	"KANK4,L1TD1"
TCGA.AZ.4684.01A	1	62939601	62952975	6	1.259	LARGE-GAIN	FOCAL	1	DOCK7
TCGA.AA.3509.01A	1	63050404	63084340	8	1.2528	LARGE-GAIN	FOCAL	2	"ANGPTL3,DOCK7"
TCGA.AZ.4684.01A	1	63050404	63084340	8	2.1622	LARGE-GAIN	FOCAL	2	"ANGPTL3,DOCK7"
TCGA.DM.A28M.01A	1	63052178	63329611	30	0.966	LARGE-GAIN	FOCAL	3	"ANGPTL3,ATG4C,DOCK7"
TCGA.AZ.4684.01A	1	63113307	63119627	4	1.5571	LARGE-GAIN	FOCAL	1	DOCK7
TCGA.AZ.4684.01A	1	63284729	63329611	7	1.8687	LARGE-GAIN	FOCAL	1	ATG4C
TCGA.AZ.4684.01A	1	63920514	63999719	10	1.6253	LARGE-GAIN	FOCAL	2	"EFCAB7,ITGB3BP"
TCGA.AA.3509.01A	1	63997449	63999719	4	1.4416	LARGE-GAIN	FOCAL	1	EFCAB7
TCGA.AA.A010.01A	1	65296485	65334977	20	0.9909	LARGE-GAIN	FOCAL	2	"JAK1,RAVER2"
TCGA.AA.A00N.01A	1	66031182	67184959	52	0.7669	LARGE-GAIN	FOCAL	3	"LEPR,PDE4B,SGIP1"
TCGA.AZ.4684.01A	1	66058313	67568919	110	0.6805	LARGE-GAIN	FOCAL	9	"C1orf141,INSL5,LEPR,MIER1,PDE4B,SGIP1,SLC35D1,TCTEX1D1,WDR78"
TCGA.DY.A1DC	1	66477359	66511403	14	0.7726	LARGE-GAIN	FOCAL	1	PDE4B
TCGA.AG.A01W.01A	1	67668268	67924662	4	0.7806	LARGE-GAIN	FOCAL	3	"IL12RB2,IL23R,SERBP1"
TCGA.AA.A01Q.01A	1	67895642	68151659	3	1.1073	LARGE-GAIN	FOCAL	2	"GADD45A,SERBP1"
TCGA.AA.A010.01A	1	67895642	68153332	5	1.784	LARGE-GAIN	FOCAL	2	"GADD45A,SERBP1"
TCGA.AA.A00N.01A	1	68895418	68942563	12	0.813	LARGE-GAIN	FOCAL	2	"DEPDC1,RPE65"
TCGA.AZ.4684.01A	1	68895418	70639070	54	1.0796	LARGE-GAIN	FOCAL	4	"DEPDC1,LRRC40,LRRC7,RPE65"
TCGA.DM.A28M.01A	1	68942563	70587423	41	0.9555	LARGE-GAIN	FOCAL	2	"DEPDC1,LRRC7"
TCGA.DY.A1DC	1	70117403	70126606	4	1.0949	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	70486646	70541739	9	1.4962	LARGE-GAIN	FOCAL	1	LRRC7
TCGA.AA.A00N.01A	1	71542433	74663916	21	0.7425	LARGE-GAIN	FOCAL	5	"FPGT,FPGT-TNNI3K,LRRIQ3,NEGR1,ZRANB2"
TCGA.DY.A1DC	1	74106105	74176371	19	0.7132	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	1	75064278	75071002	7	1.3046	LARGE-GAIN	FOCAL	1	ERICH3
TCGA.AA.A010.01A	1	76190391	76276330	23	0.8278	LARGE-GAIN	FOCAL	3	"ACADM,MSH4,RABGGTB"
TCGA.AZ.4684.01A	1	76342597	77676051	34	0.8808	LARGE-GAIN	FOCAL	5	"ASB17,MSH4,PIGK,ST6GALNAC3,ST6GALNAC5"
TCGA.DY.A1DC	1	77086108	77098482	8	0.9626	LARGE-GAIN	FOCAL	1	ST6GALNAC3
TCGA.AA.A010.01A	1	77333278	77509838	3	1.7585	LARGE-GAIN	FOCAL	1	ST6GALNAC5
TCGA.AG.3906.01A	1	78324583	78340482	8	1.205	LARGE-GAIN	FOCAL	1	FAM73A
TCGA.AA.3862.01A	1	78340482	78414359	13	1.636	LARGE-GAIN	FOCAL	3	"FAM73A,FUBP1,NEXN"
TCGA.AZ.4684.01A	1	78963508	82453480	53	1.1943	LARGE-GAIN	FOCAL	5	"ADGRL2,ADGRL4,IFI44,IFI44L,PTGFR"
TCGA.DY.A1DC	1	83177591	83227437	21	0.7691	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	1	84609994	84668329	11	1.4841	LARGE-GAIN	FOCAL	1	PRKACB
TCGA.CK.5914.01A	1	84629999	84649680	8	1.2192	LARGE-GAIN	FOCAL	1	PRKACB
TCGA.CK.5914.01A	1	84650728	84679789	6	0.8305	LARGE-GAIN	FOCAL	1	PRKACB
TCGA.AA.A010.01A	1	85665923	86046609	15	0.9162	LARGE-GAIN	FOCAL	5	"BCL10,C1orf52,CYR61,DDAH1,SYDE2"
TCGA.AZ.6606	1	85980349	86006207	6	0.793	LARGE-GAIN	FOCAL	1	DDAH1
TCGA.AA.A00N.01A	1	86142859	86227046	12	1.067	LARGE-GAIN	FOCAL	2	"COL24A1,ZNHIT6"
TCGA.AZ.4684.01A	1	86210329	86894053	67	0.9798	LARGE-GAIN	FOCAL	3	"CLCA2,COL24A1,ODF2L"
TCGA.AA.A00N.01A	1	86453269	86557918	14	0.8826	LARGE-GAIN	FOCAL	1	COL24A1
TCGA.AA.A00N.01A	1	86814384	86847918	13	0.7107	LARGE-GAIN	FOCAL	1	ODF2L
TCGA.DM.A282.01A	1	86848553	86851101	3	0.9724	LARGE-GAIN	FOCAL	1	ODF2L
TCGA.AA.A00N.01A	1	86896496	86964207	24	0.8412	LARGE-GAIN	FOCAL	2	"CLCA1,CLCA2"
TCGA.AZ.4684.01A	1	86965349	87104499	19	1.0822	LARGE-GAIN	FOCAL	2	"CLCA1,CLCA4"
TCGA.A6.3808.01A	1	89279218	89289975	3	3.6307	LARGE-GAIN	FOCAL	1	PKN2
TCGA.CK.5914.01A	1	89607177	89660928	17	0.687	LARGE-GAIN	FOCAL	2	"GBP4,GBP7"
TCGA.AA.A00N.01A	1	89618301	89664421	14	1.2972	LARGE-GAIN	FOCAL	2	"GBP4,GBP7"
TCGA.AA.A00N.01A	1	89834059	90400050	20	1.1153	LARGE-GAIN	FOCAL	4	"GBP6,LRRC8B,LRRC8C,LRRC8D"
TCGA.AZ.4684.01A	1	90486303	92149259	52	1.0369	LARGE-GAIN	FOCAL	6	"BARHL2,CDC7,HFM1,TGFBR3,ZNF326,ZNF644"
TCGA.AG.3906.01A	1	91177942	91182081	3	1.1396	LARGE-GAIN	FOCAL	1	BARHL2
TCGA.AA.3509.01A	1	91402991	91727745	5	1.1491	LARGE-GAIN	FOCAL	2	"HFM1,ZNF644"
TCGA.AA.3509.01A	1	91812911	91843912	7	1.1118	LARGE-GAIN	FOCAL	1	HFM1
TCGA.DM.A28M.01A	1	91817056	91843912	6	1.7379	LARGE-GAIN	FOCAL	1	HFM1
TCGA.AA.3861.01A	1	91818016	92470668	55	1.1271	LARGE-GAIN	FOCAL	4	"BRDT,CDC7,HFM1,TGFBR3"
TCGA.AA.3862.01A	1	91818016	92470668	55	0.9452	LARGE-GAIN	FOCAL	4	"BRDT,CDC7,HFM1,TGFBR3"
TCGA.AA.3861.01A	1	93651860	94012855	41	1.394	LARGE-GAIN	FOCAL	3	"CCDC18,DR1,FNBP1L"
TCGA.AA.3862.01A	1	93651860	94012855	41	1.2189	LARGE-GAIN	FOCAL	3	"CCDC18,DR1,FNBP1L"
TCGA.AA.A00N.01A	1	93687204	93743937	14	0.7048	LARGE-GAIN	FOCAL	1	CCDC18
TCGA.AA.3509.01A	1	93988859	94012855	9	0.6977	LARGE-GAIN	FOCAL	1	FNBP1L
TCGA.AZ.4684.01A	1	93988859	94012855	9	1.6712	LARGE-GAIN	FOCAL	1	FNBP1L
TCGA.AZ.4684.01A	1	94335224	94337579	3	1.3296	LARGE-GAIN	FOCAL	1	DNTTIP2
TCGA.AA.A010.01A	1	94458696	94522125	34	0.8972	LARGE-GAIN	FOCAL	1	ABCA4
TCGA.AA.A00N.01A	1	94458696	94972072	86	0.7038	LARGE-GAIN	FOCAL	3	"ABCA4,ABCD3,ARHGAP29"
TCGA.CK.5914.01A	1	94505543	94564308	19	0.8172	LARGE-GAIN	FOCAL	1	ABCA4
TCGA.AA.A010.01A	1	94564308	94586502	6	0.7495	LARGE-GAIN	FOCAL	1	ABCA4
TCGA.AZ.4684.01A	1	94652014	94982549	32	0.8842	LARGE-GAIN	FOCAL	2	"ABCD3,ARHGAP29"
TCGA.AA.A00N.01A	1	97250577	100214078	73	0.7365	LARGE-GAIN	FOCAL	7	"DPYD,FRRS1,LPPR4,LPPR5,PALMD,PTBP2,SNX7"
TCGA.AA.A010.01A	1	100568464	100633913	31	0.8344	LARGE-GAIN	FOCAL	3	"LRRC39,SASS6,TRMT13"
TCGA.AG.3906.01A	1	100671725	100684135	7	1.0638	LARGE-GAIN	FOCAL	1	DBT
TCGA.AA.A010.01A	1	100706279	100819264	17	0.6878	LARGE-GAIN	FOCAL	3	"CDC14A,DBT,RTCA"
TCGA.DM.A1HB	1	101834079	101842937	9	1.1647	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	1	102235492	102283538	18	0.8707	LARGE-GAIN	FOCAL	1	OLFM3
TCGA.AA.3862.01A	1	103352314	103484293	47	0.8723	LARGE-GAIN	FOCAL	1	COL11A1
TCGA.AA.3861.01A	1	103355933	103484293	44	0.9553	LARGE-GAIN	FOCAL	1	COL11A1
TCGA.A6.3808.01A	1	103487198	103573602	10	1.3098	LARGE-GAIN	FOCAL	1	COL11A1
TCGA.AA.3861.01A	1	104093516	104162153	15	1.0591	LARGE-GAIN	FOCAL	3	"AMY2A,AMY2B,RNPC3"
TCGA.DM.A1HB	1	106887127	106894006	5	1.037	LARGE-GAIN	FOCAL	0	None
TCGA.CM.5862	1	107430478	108191430	331	0.6819	LARGE-GAIN	FOCAL	3	"NTNG1,PRMT6,VAV3"
TCGA.A6.3808.01A	1	107599317	108697568	44	1.1114	LARGE-GAIN	FOCAL	4	"NTNG1,PRMT6,SLC25A24,VAV3"
TCGA.AA.3861.01A	1	108769270	109010021	5	2.768	LARGE-GAIN	FOCAL	2	"NBPF4,NBPF6"
TCGA.AA.A00N.01A	1	108769270	109010021	5	1.0502	LARGE-GAIN	FOCAL	2	"NBPF4,NBPF6"
TCGA.AA.A010.01A	1	109255501	109289287	13	0.6841	LARGE-GAIN	FOCAL	2	"FNDC7,STXBP3"
TCGA.AA.A010.01A	1	109358764	109385736	10	1.2045	LARGE-GAIN	FOCAL	1	AKNAD1
TCGA.CK.5914.01A	1	109373150	109377504	3	1.0612	LARGE-GAIN	FOCAL	1	AKNAD1
TCGA.AG.3906.01A	1	109944575	110050476	26	0.7243	LARGE-GAIN	FOCAL	5	"AMIGO1,ATXN7L2,CYB561D1,PSMA5,SYPL2"
TCGA.AA.A004.01A	1	110163587	110172387	9	0.8733	LARGE-GAIN	FOCAL	1	AMPD2
TCGA.AA.3861.01A	1	110163587	110282406	46	0.9305	LARGE-GAIN	FOCAL	6	"AMPD2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5"
TCGA.AG.3906.01A	1	110304078	110467699	8	1.0004	LARGE-GAIN	FOCAL	2	"CSF1,EPS8L3"
TCGA.AA.A010.01A	1	110948869	111061043	8	0.841	LARGE-GAIN	FOCAL	3	"KCNA10,LAMTOR5,PROK1"
TCGA.AA.A00N.01A	1	110950208	111061043	7	0.8421	LARGE-GAIN	FOCAL	3	"KCNA10,LAMTOR5,PROK1"
TCGA.AG.A01W.01A	1	111017178	111018227	3	1.226	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A02G.01A	1	111146456	111433964	3	0.7041	LARGE-GAIN	FOCAL	3	"CD53,KCNA2,KCNA3"
TCGA.AA.A00N.01A	1	111433964	111506180	13	0.9215	LARGE-GAIN	FOCAL	2	"CD53,LRIF1"
TCGA.AG.A02G.01A	1	111434945	111742947	39	1.6173	LARGE-GAIN	FOCAL	5	"CD53,CEPT1,DENND2D,DRAM2,LRIF1"
TCGA.DM.A28M.01A	1	111660765	111663101	4	1.8126	LARGE-GAIN	FOCAL	1	DRAM2
TCGA.AG.A02G.01A	1	111770270	111854238	12	1.0646	LARGE-GAIN	FOCAL	2	"CHI3L2,CHIA"
TCGA.AA.A00N.01A	1	111853006	111889483	12	1.1481	LARGE-GAIN	FOCAL	2	"CHIA,PIFO"
TCGA.AA.A00N.01A	1	111957084	112233940	40	0.8203	LARGE-GAIN	FOCAL	7	"ADORA3,ATP5F1,C1orf162,OVGP1,RAP1A,TMIGD3,WDR77"
TCGA.AF.3914.01A	1	111983813	111992416	9	0.8639	LARGE-GAIN	FOCAL	2	"ATP5F1,WDR77"
TCGA.AG.A02G.01A	1	112298510	112305298	6	1.0459	LARGE-GAIN	FOCAL	1	DDX20
TCGA.AG.A02G.01A	1	112308342	113242812	60	1.6915	LARGE-GAIN	FOCAL	8	"CAPZA1,CTTNBP2NL,DDX20,KCND3,LOC643355,MOV10,ST7L,WNT2B"
TCGA.CK.5914.01A	1	112318660	112329539	6	1.132	LARGE-GAIN	FOCAL	1	KCND3
TCGA.AG.3906.01A	1	113238751	113252733	12	1.1889	LARGE-GAIN	FOCAL	3	"MOV10,PPM1J,RHOC"
TCGA.AG.A02G.01A	1	113244033	113254537	7	1.0379	LARGE-GAIN	FOCAL	2	"PPM1J,RHOC"
TCGA.AA.A00N.01A	1	113650169	114133099	12	0.8969	LARGE-GAIN	FOCAL	2	"LRIG2,MAGI3"
TCGA.AA.3509.01A	1	114123155	114162309	6	1.7135	LARGE-GAIN	FOCAL	1	MAGI3
TCGA.AZ.4684.01A	1	114123155	114162309	6	0.8599	LARGE-GAIN	FOCAL	1	MAGI3
TCGA.DM.A28M.01A	1	114123155	114162309	6	1.1855	LARGE-GAIN	FOCAL	1	MAGI3
TCGA.AA.A00N.01A	1	114505968	114976199	34	0.7319	LARGE-GAIN	FOCAL	4	"HIPK1,OLFML3,SYT6,TRIM33"
TCGA.DM.A1HB	1	114621339	114631166	5	1.58	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	115110700	115167760	24	0.8138	LARGE-GAIN	FOCAL	2	"BCAS2,DENND2C"
TCGA.AG.A02G.01A	1	115215696	115226803	11	0.7708	LARGE-GAIN	FOCAL	1	AMPD1
TCGA.AG.A02G.01A	1	115229314	115615519	66	1.9166	LARGE-GAIN	FOCAL	7	"AMPD1,CSDE1,NRAS,SIKE1,SYCP1,TSHB,TSPAN2"
TCGA.AA.3509.01A	1	115428103	115575932	19	1.7388	LARGE-GAIN	FOCAL	2	"SYCP1,TSHB"
TCGA.AZ.4684.01A	1	115428103	115575932	19	0.8951	LARGE-GAIN	FOCAL	2	"SYCP1,TSHB"
TCGA.DM.A28M.01A	1	115428103	115593042	21	0.7717	LARGE-GAIN	FOCAL	3	"SYCP1,TSHB,TSPAN2"
TCGA.AA.A00K.01A	1	116380579	116382859	2	2.7989	LARGE-GAIN	FOCAL	1	NHLH2
TCGA.CK.5914.01A	1	117121964	117158673	9	0.862	LARGE-GAIN	FOCAL	1	IGSF3
TCGA.G4.6298	1	117377013	117456935	24	0.71	LARGE-GAIN	FOCAL	1	PTGFRN
TCGA.CK.5914.01A	1	117527301	117576430	11	0.8777	LARGE-GAIN	FOCAL	2	"CD101,PTGFRN"
TCGA.CK.5914.01A	1	117664384	117753365	7	0.7642	LARGE-GAIN	FOCAL	2	"TRIM45,VTCN1"
TCGA.AA.3509.01A	1	117944806	118693890	97	1.0528	LARGE-GAIN	FOCAL	5	"FAM46C,GDAP2,MAN1A2,SPAG17,WDR3"
TCGA.CK.5914.01A	1	118003063	118067648	10	0.7706	LARGE-GAIN	FOCAL	1	MAN1A2
TCGA.AA.A00N.01A	1	118490978	118501906	14	0.6817	LARGE-GAIN	FOCAL	2	"SPAG17,WDR3"
TCGA.AA.A00N.01A	1	118506375	118530380	9	1.1747	LARGE-GAIN	FOCAL	1	SPAG17
TCGA.AA.3952	1	118555505	120073302	465	1.1555	LARGE-GAIN	FOCAL	6	"HAO2,HSD3B1,HSD3B2,SPAG17,TBX15,WARS2"
TCGA.AA.A00N.01A	1	118727639	119428043	3	2.1891	LARGE-GAIN	FOCAL	2	"SPAG17,TBX15"
TCGA.AA.A00N.01A	1	119433442	119474205	7	0.7171	LARGE-GAIN	FOCAL	1	TBX15
TCGA.AA.A00N.01A	1	119618933	120056428	16	1.0374	LARGE-GAIN	FOCAL	4	"HAO2,HSD3B1,HSD3B2,WARS2"
TCGA.CK.5914.01A	1	119923680	120056428	13	1.0834	LARGE-GAIN	FOCAL	3	"HAO2,HSD3B1,HSD3B2"
TCGA.AA.3952	1	120077583	120520714	157	1.6176	LARGE-GAIN	FOCAL	7	"ADAM30,HMGCS2,NBPF7,NOTCH2,PHGDH,REG4,ZNF697"
TCGA.AG.3891.01A	1	120165291	120168456	3	0.9065	LARGE-GAIN	FOCAL	1	ZNF697
TCGA.AG.3906.01A	1	120165291	120168456	2	1.3428	LARGE-GAIN	FOCAL	1	ZNF697
TCGA.AA.A010.01A	1	120254656	120286458	11	0.9448	LARGE-GAIN	FOCAL	1	PHGDH
TCGA.AA.A00N.01A	1	120269404	120351261	23	1.0841	LARGE-GAIN	FOCAL	3	"HMGCS2,PHGDH,REG4"
TCGA.AA.A010.01A	1	120337187	120351261	5	0.7543	LARGE-GAIN	FOCAL	1	REG4
TCGA.AA.A010.01A	1	120436600	120493295	24	0.8622	LARGE-GAIN	FOCAL	2	"ADAM30,NOTCH2"
TCGA.AA.A00N.01A	1	120457927	120547923	34	1.1838	LARGE-GAIN	FOCAL	1	NOTCH2
TCGA.AA.3862.01A	1	120464867	120529552	24	0.7615	LARGE-GAIN	FOCAL	1	NOTCH2
TCGA.CK.5914.01A	1	120479853	120547923	19	0.8457	LARGE-GAIN	FOCAL	1	NOTCH2
TCGA.AA.3952	1	120521759	121184058	8	1.0989	LARGE-GAIN	FOCAL	3	"FAM72B,FCGR1B,NOTCH2"
TCGA.AA.A02E.01A	1	120934331	144903050	38	0.6885	LARGE-GAIN	FOCAL	10	"FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,PDE4DIP,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AA.3952	1	121184897	144957687	29	0.7156	LARGE-GAIN	FOCAL	9	"FAM72C,FAM72D,NBPF20,NBPF8,NBPF9,PDE4DIP,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.G4.6299	1	144033938	144920926	15	1.2221	LARGE-GAIN	FOCAL	6	"NBPF20,NBPF8,NBPF9,PDE4DIP,PPIAL4A,PPIAL4C"
TCGA.CK.5914.01A	1	144814632	144906065	30	1.3213	LARGE-GAIN	FOCAL	4	"NBPF20,NBPF8,NBPF9,PDE4DIP"
TCGA.AA.A00N.01A	1	144852357	144903050	24	1.2352	LARGE-GAIN	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.3509.01A	1	144912119	144918786	6	1.4933	LARGE-GAIN	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.3980.01A	1	145311794	145328371	2	1.3723	LARGE-GAIN	FOCAL	3	"NBPF10,NBPF20,NBPF9"
TCGA.AG.3906.01A	1	145487252	145498494	5	0.8205	LARGE-GAIN	FOCAL	3	"LIX1L,NBPF10,NBPF20"
TCGA.AA.3509.01A	1	145761139	145816587	11	1.5886	LARGE-GAIN	FOCAL	4	"GPR89A,NBPF10,NBPF20,PDZK1"
TCGA.AZ.4684.01A	1	145762072	145816587	10	1.3208	LARGE-GAIN	FOCAL	4	"GPR89A,NBPF10,NBPF20,PDZK1"
TCGA.AA.3930.01A	1	145763498	145818719	10	1.0547	LARGE-GAIN	FOCAL	4	"GPR89A,NBPF10,NBPF20,PDZK1"
TCGA.AZ.4684.01A	1	147415513	147416059	2	2.2967	LARGE-GAIN	FOCAL	1	GPR89B
TCGA.AG.A01W.01A	1	149062257	149071370	6	0.6919	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	1	149372257	149375908	7	0.8336	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	1	149526316	149529483	7	0.9219	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	1	150116844	150130975	6	1.3791	LARGE-GAIN	FOCAL	2	"PLEKHO1,VPS45"
TCGA.AA.A010.01A	1	150192948	150485675	82	0.6805	LARGE-GAIN	FOCAL	10	"ANP32E,APH1A,C1orf54,CA14,CIART,ECM1,MRPS21,PRPF3,RPRD2,TARS2"
TCGA.AG.3891.01A	1	150234507	150236928	6	0.9122	LARGE-GAIN	FOCAL	1	CA14
TCGA.AG.3611.01A	1	150236032	150325260	27	0.8	LARGE-GAIN	FOCAL	6	"APH1A,C1orf54,CA14,CIART,MRPS21,PRPF3"
TCGA.AG.A01W.01A	1	150452150	150458300	6	1.1563	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	1	150469979	150483894	12	1.4958	LARGE-GAIN	FOCAL	2	"ECM1,TARS2"
TCGA.AG.A015.01A	1	150483894	150532504	16	0.8571	LARGE-GAIN	FOCAL	2	"ADAMTSL4,ECM1"
TCGA.AG.3906.01A	1	150524957	150530898	10	1.1518	LARGE-GAIN	FOCAL	1	ADAMTSL4
TCGA.AG.A01W.01A	1	150543136	150548783	9	1.1104	LARGE-GAIN	FOCAL	1	MCL1
TCGA.AG.A01W.01A	1	150589712	150594888	7	1.1419	LARGE-GAIN	FOCAL	1	ENSA
TCGA.AG.3906.01A	1	150686488	150705475	5	0.7696	LARGE-GAIN	FOCAL	2	"CTSS,HORMAD1"
TCGA.AG.A015.01A	1	150795632	150804754	6	0.8702	LARGE-GAIN	FOCAL	1	ARNT
TCGA.AG.3906.01A	1	150808719	150830776	6	1.2551	LARGE-GAIN	FOCAL	1	ARNT
TCGA.AG.3891.01A	1	150814851	150825161	3	1.1297	LARGE-GAIN	FOCAL	1	ARNT
TCGA.AA.A010.01A	1	150848931	150902416	4	0.8877	LARGE-GAIN	FOCAL	2	"ARNT,SETDB1"
TCGA.AG.3891.01A	1	150931606	150941356	14	0.871	LARGE-GAIN	FOCAL	2	"CERS2,SETDB1"
TCGA.AG.3906.01A	1	150931606	150967005	22	1.1182	LARGE-GAIN	FOCAL	3	"ANXA9,CERS2,SETDB1"
TCGA.AG.A00C.01A	1	151010000	151028101	13	0.7032	LARGE-GAIN	FOCAL	3	"BNIPL,C1orf56,CDC42SE1"
TCGA.AA.3862.01A	1	151075986	151131123	20	1.8043	LARGE-GAIN	FOCAL	4	"GABPB2,SEMA6C,TNFAIP8L2,TNFAIP8L2-SCNM1"
TCGA.AG.3906.01A	1	151089821	151114938	15	1.1544	LARGE-GAIN	FOCAL	2	"GABPB2,SEMA6C"
TCGA.AG.A015.01A	1	151106818	151110155	7	1.0538	LARGE-GAIN	FOCAL	1	SEMA6C
TCGA.AG.3891.01A	1	151106818	151112412	12	1.1144	LARGE-GAIN	FOCAL	1	SEMA6C
TCGA.AA.A010.01A	1	151158226	151379345	77	0.8458	LARGE-GAIN	FOCAL	9	"PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,SELENBP1,VPS72,ZNF687"
TCGA.AG.A015.01A	1	151260972	151265337	5	0.9691	LARGE-GAIN	FOCAL	2	"PI4KB,ZNF687"
TCGA.AA.A00N.01A	1	151318631	151372490	14	1.4305	LARGE-GAIN	FOCAL	3	"PSMB4,RFX5,SELENBP1"
TCGA.AF.3914.01A	1	151372012	151384079	13	0.7631	LARGE-GAIN	FOCAL	2	"POGZ,PSMB4"
TCGA.AA.A010.01A	1	151490944	151536955	23	0.7176	LARGE-GAIN	FOCAL	2	"CGN,TUFT1"
TCGA.CK.5914.01A	1	151825892	151861643	5	0.8183	LARGE-GAIN	FOCAL	2	"THEM4,THEM5"
TCGA.AG.A015.01A	1	152130217	152284518	22	0.8823	LARGE-GAIN	FOCAL	3	"FLG,HRNR,RPTN"
TCGA.AA.A02E.01A	1	152275158	152328362	23	1.1942	LARGE-GAIN	FOCAL	2	"FLG,FLG2"
TCGA.AA.A017.01A	1	152276009	152283134	11	1.089	LARGE-GAIN	FOCAL	1	FLG
TCGA.AA.A010.01A	1	152276009	152285257	15	0.8683	LARGE-GAIN	FOCAL	1	FLG
TCGA.CK.5914.01A	1	152276009	152384542	25	0.9904	LARGE-GAIN	FOCAL	3	"CRNN,FLG,FLG2"
TCGA.AA.A017.01A	1	152323059	152382031	7	1.103	LARGE-GAIN	FOCAL	2	"CRNN,FLG2"
TCGA.AA.A02E.01A	1	153277371	153320295	11	1.0731	LARGE-GAIN	FOCAL	2	"PGLYRP3,PGLYRP4"
TCGA.CK.5914.01A	1	153277371	153320295	11	1.1173	LARGE-GAIN	FOCAL	2	"PGLYRP3,PGLYRP4"
TCGA.AG.A01W.01A	1	153427050	153429133	3	0.9505	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	1	153484166	153491042	7	0.8458	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	1	153631556	153654931	19	0.7654	LARGE-GAIN	FOCAL	3	"ILF2,NPR1,SNAPIN"
TCGA.AA.3930.01A	1	153654132	153665573	15	0.7991	LARGE-GAIN	FOCAL	1	NPR1
TCGA.AA.3939.01A	1	153654132	153713711	18	0.9032	LARGE-GAIN	FOCAL	2	"INTS3,NPR1"
TCGA.AG.3906.01A	1	153654931	153660478	10	0.8046	LARGE-GAIN	FOCAL	1	NPR1
TCGA.AG.A02X.01A	1	153713068	153713711	2	4.2164	LARGE-GAIN	FOCAL	1	INTS3
TCGA.AA.3939.01A	1	153908499	153908981	2	1.9213	LARGE-GAIN	FOCAL	1	DENND4B
TCGA.AA.A010.01A	1	153957138	154002341	18	0.7094	LARGE-GAIN	FOCAL	3	"NUP210L,RAB13,RPS27"
TCGA.AA.A010.01A	1	154098757	154166084	23	0.7559	LARGE-GAIN	FOCAL	2	"NUP210L,TPM3"
TCGA.AA.A00N.01A	1	154321298	154420523	7	0.7209	LARGE-GAIN	FOCAL	2	"ATP8B2,IL6R"
TCGA.AA.A010.01A	1	154321298	154437563	10	0.7803	LARGE-GAIN	FOCAL	2	"ATP8B2,IL6R"
TCGA.AG.3906.01A	1	154471550	154543617	27	0.7733	LARGE-GAIN	FOCAL	4	"CHRNB2,SHE,TDRD10,UBE2Q1"
TCGA.AA.3939.01A	1	154960544	154966072	5	1.1542	LARGE-GAIN	FOCAL	2	"FLAD1,LENEP"
TCGA.AG.3891.01A	1	154960544	154966072	5	0.7856	LARGE-GAIN	FOCAL	2	"FLAD1,LENEP"
TCGA.AG.A00C.01A	1	155025875	155032313	8	0.8082	LARGE-GAIN	FOCAL	1	ADAM15
TCGA.AG.3906.01A	1	155160161	155169538	8	1.4086	LARGE-GAIN	FOCAL	2	"MUC1,THBS3"
TCGA.AG.3906.01A	1	155170200	155172010	5	0.9995	LARGE-GAIN	FOCAL	1	THBS3
TCGA.AA.3861.01A	1	155208261	155228586	17	1.5554	LARGE-GAIN	FOCAL	3	"FAM189B,GBA,SCAMP3"
TCGA.AA.3862.01A	1	155210792	155228586	14	2.199	LARGE-GAIN	FOCAL	3	"FAM189B,GBA,SCAMP3"
TCGA.AA.3930.01A	1	155269848	155271055	3	1.1803	LARGE-GAIN	FOCAL	1	PKLR
TCGA.AA.A010.01A	1	155753730	155990611	64	0.829	LARGE-GAIN	FOCAL	7	"ARHGEF2,GON4L,KIAA0907,RIT1,RXFP4,SSR2,SYT11"
TCGA.AG.3906.01A	1	156031123	156046394	6	1.2535	LARGE-GAIN	FOCAL	2	"MEX3A,RAB25"
TCGA.AG.3906.01A	1	156347042	156376854	9	1.169	LARGE-GAIN	FOCAL	2	"C1orf61,RHBG"
TCGA.AG.3891.01A	1	156351117	156374279	6	1.1001	LARGE-GAIN	FOCAL	2	"C1orf61,RHBG"
TCGA.AG.A01W.01A	1	156417451	156420299	5	0.7465	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	156498687	156504316	7	1.3368	LARGE-GAIN	FOCAL	1	IQGAP3
TCGA.AA.A00N.01A	1	156504897	156513718	7	0.7502	LARGE-GAIN	FOCAL	1	IQGAP3
TCGA.AA.A00N.01A	1	156517823	156526284	5	1.5076	LARGE-GAIN	FOCAL	1	IQGAP3
TCGA.CK.5914.01A	1	156517823	156526284	5	0.8164	LARGE-GAIN	FOCAL	1	IQGAP3
TCGA.AG.3906.01A	1	156520002	156568703	29	0.7365	LARGE-GAIN	FOCAL	4	"APOA1BP,GPATCH4,IQGAP3,TTC24"
TCGA.AG.3891.01A	1	156556205	156567804	9	0.7642	LARGE-GAIN	FOCAL	3	"APOA1BP,GPATCH4,TTC24"
TCGA.AG.A01W.01A	1	156897650	156917905	13	0.6912	LARGE-GAIN	FOCAL	2	"ARHGEF11,LRRC71"
TCGA.AA.A02E.01A	1	156916443	156917928	4	1.8052	LARGE-GAIN	FOCAL	1	ARHGEF11
TCGA.CK.5914.01A	1	156937727	156955828	10	0.8942	LARGE-GAIN	FOCAL	1	ARHGEF11
TCGA.AA.3939.01A	1	156939731	157490765	23	0.6902	LARGE-GAIN	FOCAL	4	"ARHGEF11,ETV3,ETV3L,FCRL5"
TCGA.AA.A00N.01A	1	157485423	158054183	73	1.2761	LARGE-GAIN	FOCAL	7	"CD5L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,KIRREL"
TCGA.AA.A02H.01A	1	157736554	157773593	16	0.9585	LARGE-GAIN	FOCAL	2	"FCRL1,FCRL2"
TCGA.AG.A00Y.01A	1	157804150	158058076	9	1.4379	LARGE-GAIN	FOCAL	2	"CD5L,KIRREL"
TCGA.AA.A00N.01A	1	158056335	158301097	31	0.742	LARGE-GAIN	FOCAL	5	"CD1A,CD1B,CD1C,CD1D,KIRREL"
TCGA.AA.A00N.01A	1	158368327	158583973	13	0.7758	LARGE-GAIN	FOCAL	9	"OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6P1,OR6Y1,SPTA1"
TCGA.AA.A02H.01A	1	158368327	158584958	14	0.6815	LARGE-GAIN	FOCAL	9	"OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6P1,OR6Y1,SPTA1"
TCGA.AG.A01W.01A	1	158561919	158576569	6	0.7446	LARGE-GAIN	FOCAL	1	OR10Z1
TCGA.AA.A00N.01A	1	158584958	158606379	12	1.5887	LARGE-GAIN	FOCAL	1	SPTA1
TCGA.AA.A02H.01A	1	158604311	158619615	14	0.772	LARGE-GAIN	FOCAL	1	SPTA1
TCGA.AA.A010.01A	1	158624351	158632492	5	0.9072	LARGE-GAIN	FOCAL	1	SPTA1
TCGA.CK.5914.01A	1	158641817	158653134	8	0.6952	LARGE-GAIN	FOCAL	1	SPTA1
TCGA.AA.3861.01A	1	158686931	159170554	44	0.9705	LARGE-GAIN	FOCAL	9	"AIM2,CADM3,IFI16,MNDA,OR6K3,OR6K6,OR6N1,OR6N2,PYHIN1"
TCGA.AA.A00N.01A	1	159170554	159283848	10	1.4566	LARGE-GAIN	FOCAL	4	"ACKR1,CADM3,FCER1A,OR10J3"
TCGA.AA.A010.01A	1	159683276	159799604	16	0.7661	LARGE-GAIN	FOCAL	4	"CRP,DUSP23,FCRL6,SLAMF8"
TCGA.A6.3808.01A	1	159770296	159799604	11	2.3996	LARGE-GAIN	FOCAL	2	"FCRL6,SLAMF8"
TCGA.DM.A1HB	1	159785283	159856428	26	0.8295	LARGE-GAIN	FOCAL	5	"C1orf204,CFAP45,FCRL6,SLAMF8,VSIG8"
TCGA.AA.3841	1	159858733	160024882	64	0.7287	LARGE-GAIN	FOCAL	6	"CFAP45,IGSF9,KCNJ10,PIGM,SLAMF9,TAGLN2"
TCGA.CK.5914.01A	1	160085559	160146228	34	1.0613	LARGE-GAIN	FOCAL	2	"ATP1A2,ATP1A4"
TCGA.AG.3909.01A	1	160085559	160151425	36	0.8546	LARGE-GAIN	FOCAL	2	"ATP1A2,ATP1A4"
TCGA.AA.A00N.01A	1	160097305	160146228	27	1.0731	LARGE-GAIN	FOCAL	2	"ATP1A2,ATP1A4"
TCGA.AA.A01Q.01A	1	160104898	160109413	6	0.7395	LARGE-GAIN	FOCAL	1	ATP1A2
TCGA.AA.A00N.01A	1	160460863	160721966	28	1.0271	LARGE-GAIN	FOCAL	5	"CD48,CD84,SLAMF1,SLAMF6,SLAMF7"
TCGA.CK.5914.01A	1	160535173	160722842	20	0.7394	LARGE-GAIN	FOCAL	4	"CD48,CD84,SLAMF1,SLAMF7"
TCGA.AA.A010.01A	1	160765951	160784173	5	0.8921	LARGE-GAIN	FOCAL	1	LY9
TCGA.AA.A010.01A	1	160808173	160854548	12	0.8143	LARGE-GAIN	FOCAL	2	"CD244,ITLN1"
TCGA.AA.A00N.01A	1	161185038	161206212	20	0.6855	LARGE-GAIN	FOCAL	4	"APOA2,FCER1G,NR1I3,TOMM40L"
TCGA.AA.3862.01A	1	161476073	161643710	26	2.2048	LARGE-GAIN	FOCAL	6	"FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,HSPA6"
TCGA.AA.3861.01A	1	161476073	161644985	26	1.5976	LARGE-GAIN	FOCAL	6	"FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,HSPA6"
TCGA.AA.A00N.01A	1	161641165	161647059	5	1.4371	LARGE-GAIN	FOCAL	1	FCGR2B
TCGA.AA.A00N.01A	1	162551060	162769516	28	0.8014	LARGE-GAIN	FOCAL	3	"DDR2,HSD17B7,UAP1"
TCGA.AA.A010.01A	1	162760521	162767541	4	1.0788	LARGE-GAIN	FOCAL	1	HSD17B7
TCGA.AA.3862.01A	1	162767541	162782039	6	2.8602	LARGE-GAIN	FOCAL	1	HSD17B7
TCGA.AA.A00N.01A	1	162822786	164529059	31	0.8639	LARGE-GAIN	FOCAL	5	"C1orf110,NUF2,PBX1,RGS4,RGS5"
TCGA.AA.3509.01A	1	163297215	163325073	12	1.837	LARGE-GAIN	FOCAL	1	NUF2
TCGA.AZ.4684.01A	1	163297215	163325073	12	1.6543	LARGE-GAIN	FOCAL	1	NUF2
TCGA.AA.A010.01A	1	163297215	164768904	16	0.7573	LARGE-GAIN	FOCAL	2	"NUF2,PBX1"
TCGA.CK.5914.01A	1	164781190	165397934	20	0.7241	LARGE-GAIN	FOCAL	3	"LMX1A,PBX1,RXRG"
TCGA.AA.A00N.01A	1	164789260	165532692	23	0.8825	LARGE-GAIN	FOCAL	4	"LMX1A,LRRC52,PBX1,RXRG"
TCGA.CK.6751	1	164948644	164953636	5	1.4958	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	1	165667588	166039426	16	0.7014	LARGE-GAIN	FOCAL	4	"ALDH9A1,FAM78B,TMCO1,UCK2"
TCGA.AA.A00N.01A	1	165721271	166135195	15	0.8058	LARGE-GAIN	FOCAL	3	"FAM78B,TMCO1,UCK2"
TCGA.AG.A01W.01A	1	166171549	166280746	16	0.7407	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	1	166810144	166829383	8	0.7298	LARGE-GAIN	FOCAL	2	"POGK,TADA1"
TCGA.AG.3906.01A	1	166925971	166944386	3	0.997	LARGE-GAIN	FOCAL	1	ILDR2
TCGA.AA.3509.01A	1	166974299	166990858	5	1.9741	LARGE-GAIN	FOCAL	1	MAEL
TCGA.AZ.4684.01A	1	166974299	166990858	5	1.7265	LARGE-GAIN	FOCAL	1	MAEL
TCGA.AA.A00N.01A	1	167023534	167064049	8	0.9241	LARGE-GAIN	FOCAL	1	GPA33
TCGA.AA.A00N.01A	1	167298428	167384749	16	1.0467	LARGE-GAIN	FOCAL	1	POU2F1
TCGA.AA.3509.01A	1	167971700	168014096	9	1.7174	LARGE-GAIN	FOCAL	1	DCAF6
TCGA.AZ.4684.01A	1	167971700	168014096	9	1.4954	LARGE-GAIN	FOCAL	1	DCAF6
TCGA.AA.A00N.01A	1	168054738	168148269	6	1.0307	LARGE-GAIN	FOCAL	2	"GPR161,TIPRL"
TCGA.AG.A01W.01A	1	168081784	168094780	12	0.8399	LARGE-GAIN	FOCAL	1	GPR161
TCGA.AA.A00N.01A	1	168250310	168698067	19	1.1338	LARGE-GAIN	FOCAL	4	"DPT,TBX19,XCL1,XCL2"
TCGA.CK.5914.01A	1	168274226	169076020	15	0.8203	LARGE-GAIN	FOCAL	5	"ATP1B1,DPT,TBX19,XCL1,XCL2"
TCGA.AA.A00N.01A	1	169138637	169394007	22	0.6999	LARGE-GAIN	FOCAL	3	"BLZF1,CCDC181,NME7"
TCGA.AA.3509.01A	1	169338678	169513502	32	1.3134	LARGE-GAIN	FOCAL	4	"BLZF1,CCDC181,F5,SLC19A2"
TCGA.CK.5914.01A	1	169454754	169509535	14	0.7747	LARGE-GAIN	FOCAL	2	"F5,SLC19A2"
TCGA.AA.A00N.01A	1	169497126	169833463	83	0.8026	LARGE-GAIN	FOCAL	7	"C1orf112,F5,METTL18,SCYL3,SELE,SELL,SELP"
TCGA.AA.3509.01A	1	169515633	169985566	91	0.8036	LARGE-GAIN	FOCAL	8	"C1orf112,F5,KIFAP3,METTL18,SCYL3,SELE,SELL,SELP"
TCGA.CK.5914.01A	1	169660843	169702649	20	0.7747	LARGE-GAIN	FOCAL	2	"SELE,SELL"
TCGA.DY.A1DC	1	169661298	169666139	9	0.8712	LARGE-GAIN	FOCAL	1	SELL
TCGA.AA.A00N.01A	1	169951064	170024409	14	1.1271	LARGE-GAIN	FOCAL	1	KIFAP3
TCGA.DM.A28M.01A	1	169951796	170004553	9	1.6414	LARGE-GAIN	FOCAL	1	KIFAP3
TCGA.AA.3509.01A	1	169993517	170003466	3	2.8911	LARGE-GAIN	FOCAL	1	KIFAP3
TCGA.AZ.4684.01A	1	169993517	170003466	3	2.805	LARGE-GAIN	FOCAL	1	KIFAP3
TCGA.AA.A00N.01A	1	170043496	170501270	6	2.0623	LARGE-GAIN	FOCAL	3	"GORAB,KIFAP3,METTL11B"
TCGA.AA.A010.01A	1	170043496	170934243	21	0.7077	LARGE-GAIN	FOCAL	5	"GORAB,KIFAP3,METTL11B,MROH9,PRRX1"
TCGA.DY.A1DC	1	170412739	170413418	4	1.2311	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	170508342	171076789	34	0.7458	LARGE-GAIN	FOCAL	4	"FMO3,GORAB,MROH9,PRRX1"
TCGA.AG.A01W.01A	1	170804736	170845552	17	0.8262	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	1	170846231	170856207	6	1.3451	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	171077182	171168436	15	1.2431	LARGE-GAIN	FOCAL	2	"FMO2,FMO3"
TCGA.AA.A00N.01A	1	171172992	171621108	56	0.7224	LARGE-GAIN	FOCAL	5	"FMO1,FMO2,FMO4,MYOC,PRRC2C"
TCGA.AZ.4684.01A	1	172520610	172578905	20	1.4314	LARGE-GAIN	FOCAL	1	SUCO
TCGA.AA.3509.01A	1	172520610	173456826	36	1.2686	LARGE-GAIN	FOCAL	5	"FASLG,PRDX6,SUCO,TNFSF18,TNFSF4"
TCGA.AG.3906.01A	1	172538131	172548278	8	0.9334	LARGE-GAIN	FOCAL	1	SUCO
TCGA.DM.A28M.01A	1	172538131	172548278	7	1.4885	LARGE-GAIN	FOCAL	1	SUCO
TCGA.AA.A00N.01A	1	172569172	173176131	16	1.0311	LARGE-GAIN	FOCAL	4	"FASLG,SUCO,TNFSF18,TNFSF4"
TCGA.AA.A010.01A	1	172628300	173155656	8	0.7198	LARGE-GAIN	FOCAL	3	"FASLG,TNFSF18,TNFSF4"
TCGA.AG.3906.01A	1	173450435	173456826	4	1.0892	LARGE-GAIN	FOCAL	1	PRDX6
TCGA.AA.A00N.01A	1	173470163	173552598	23	0.763	LARGE-GAIN	FOCAL	1	SLC9C2
TCGA.AA.A00N.01A	1	173615934	173814297	30	0.7473	LARGE-GAIN	FOCAL	4	"ANKRD45,CENPL,DARS2,KLHL20"
TCGA.AA.A00N.01A	1	173854725	174652611	42	0.7699	LARGE-GAIN	FOCAL	5	"GPR52,RABGAP1L,RC3H1,SERPINC1,ZBTB37"
TCGA.CK.5914.01A	1	175086063	175293444	13	0.8449	LARGE-GAIN	FOCAL	3	"KIAA0040,TNN,TNR"
TCGA.AA.A00N.01A	1	175113494	175958451	29	1.1955	LARGE-GAIN	FOCAL	4	"KIAA0040,RFWD2,TNN,TNR"
TCGA.CK.5914.01A	1	175299161	175334145	10	1.4551	LARGE-GAIN	FOCAL	1	TNR
TCGA.AA.A00N.01A	1	176525512	178426766	95	1.2878	LARGE-GAIN	FOCAL	5	"ASTN1,BRINP2,PAPPA2,RASAL2,SEC16B"
TCGA.AA.A010.01A	1	176983871	177915503	29	0.8945	LARGE-GAIN	FOCAL	3	"ASTN1,BRINP2,SEC16B"
TCGA.AA.A01V	1	177363012	177367161	3	1.3047	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	178745839	178861327	18	0.7122	LARGE-GAIN	FOCAL	2	"ANGPTL1,RALGPS2"
TCGA.AA.3509.01A	1	178754628	178846594	10	1.8902	LARGE-GAIN	FOCAL	2	"ANGPTL1,RALGPS2"
TCGA.AZ.4684.01A	1	178754628	178846594	10	1.6287	LARGE-GAIN	FOCAL	2	"ANGPTL1,RALGPS2"
TCGA.AG.3611.01A	1	179271783	179352527	22	0.7466	LARGE-GAIN	FOCAL	2	"AXDND1,SOAT1"
TCGA.A6.3808.01A	1	180382459	180399260	2	2.7834	LARGE-GAIN	FOCAL	1	ACBD6
TCGA.CK.5914.01A	1	180945656	180962441	5	1.1802	LARGE-GAIN	FOCAL	1	STX6
TCGA.AA.A00N.01A	1	181479584	181767798	48	0.8837	LARGE-GAIN	FOCAL	1	CACNA1E
TCGA.AG.3909.01A	1	181741215	181750515	3	0.7511	LARGE-GAIN	FOCAL	1	CACNA1E
TCGA.AG.A01W.01A	1	181751614	181769418	8	0.9503	LARGE-GAIN	FOCAL	1	CACNA1E
TCGA.AA.A010.01A	1	182569417	182763441	13	0.8558	LARGE-GAIN	FOCAL	3	"NPL,RGS16,RGS8"
TCGA.DM.A28M.01A	1	182843942	182845902	4	1.9242	LARGE-GAIN	FOCAL	1	DHX9
TCGA.AG.A01W.01A	1	182952606	182990191	13	0.7174	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	183072456	183559242	97	1.015	LARGE-GAIN	FOCAL	5	"LAMC1,LAMC2,NCF2,NMNAT2,SMG7"
TCGA.AG.A01N.01A	1	183196623	183536011	52	0.7264	LARGE-GAIN	FOCAL	4	"LAMC2,NCF2,NMNAT2,SMG7"
TCGA.AG.A01W.01A	1	183416079	183420472	4	1.025	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	1	183532281	183604600	18	0.8512	LARGE-GAIN	FOCAL	2	"ARPC5,NCF2"
TCGA.AA.A00N.01A	1	183816653	183947516	27	1.02	LARGE-GAIN	FOCAL	2	"COLGALT2,RGL1"
TCGA.AA.A00N.01A	1	184446593	184695339	20	0.7269	LARGE-GAIN	FOCAL	2	"C1orf21,EDEM3"
TCGA.AG.A01W.01A	1	184542027	184543427	3	1.1166	LARGE-GAIN	FOCAL	1	C1orf21
TCGA.AG.A01W.01A	1	184561822	184573768	11	0.9592	LARGE-GAIN	FOCAL	1	C1orf21
TCGA.AA.A00N.01A	1	184764159	185097740	24	0.7265	LARGE-GAIN	FOCAL	3	"FAM129A,RNF2,TRMT1L"
TCGA.AG.A02X.01A	1	184792274	184792723	2	2.1856	LARGE-GAIN	FOCAL	1	FAM129A
TCGA.AG.3611.01A	1	185153888	185190994	7	0.8118	LARGE-GAIN	FOCAL	1	SWT1
TCGA.AZ.4684.01A	1	185267126	186063359	72	1.0915	LARGE-GAIN	FOCAL	2	"HMCN1,IVNS1ABP"
TCGA.AA.3509.01A	1	185267126	186326520	159	1.1433	LARGE-GAIN	FOCAL	4	"HMCN1,IVNS1ABP,PRG4,TPR"
TCGA.A6.3808.01A	1	185815097	186270677	102	0.8329	LARGE-GAIN	FOCAL	2	"HMCN1,PRG4"
TCGA.AA.A00N.01A	1	185815097	186321061	145	0.873	LARGE-GAIN	FOCAL	3	"HMCN1,PRG4,TPR"
TCGA.CK.5914.01A	1	185988644	186057034	26	0.7411	LARGE-GAIN	FOCAL	1	HMCN1
TCGA.AA.A02H.01A	1	186022067	186030941	5	1.4076	LARGE-GAIN	FOCAL	1	HMCN1
TCGA.AA.A02H.01A	1	186045522	186064333	13	0.8556	LARGE-GAIN	FOCAL	1	HMCN1
TCGA.AZ.4684.01A	1	186064333	186296625	63	0.6863	LARGE-GAIN	FOCAL	3	"HMCN1,PRG4,TPR"
TCGA.AA.A02H.01A	1	186092089	186114838	12	0.9648	LARGE-GAIN	FOCAL	1	HMCN1
TCGA.AA.A02H.01A	1	186147552	186158662	4	0.9012	LARGE-GAIN	FOCAL	1	HMCN1
TCGA.AY.6196	1	186167932	189119684	889	0.9901	LARGE-GAIN	FOCAL	7	"C1orf27,OCLM,PDC,PLA2G4A,PRG4,PTGS2,TPR"
TCGA.AA.A010.01A	1	186273878	186281884	10	0.7997	LARGE-GAIN	FOCAL	2	"PRG4,TPR"
TCGA.AA.A01Q.01A	1	186276151	186276540	2	1.4296	LARGE-GAIN	FOCAL	1	PRG4
TCGA.AA.A02H.01A	1	186296625	186310113	12	0.7196	LARGE-GAIN	FOCAL	1	TPR
TCGA.AG.A01N.01A	1	186300573	186306133	8	0.8727	LARGE-GAIN	FOCAL	1	TPR
TCGA.AZ.4684.01A	1	186300573	186307175	9	1.7543	LARGE-GAIN	FOCAL	1	TPR
TCGA.AG.A01N.01A	1	186319308	186324495	5	0.8719	LARGE-GAIN	FOCAL	1	TPR
TCGA.AA.3509.01A	1	186327653	186332427	8	2.2303	LARGE-GAIN	FOCAL	1	TPR
TCGA.AZ.4684.01A	1	186327653	186332427	8	1.9301	LARGE-GAIN	FOCAL	1	TPR
TCGA.DM.A28M.01A	1	186327653	186332427	8	1.7598	LARGE-GAIN	FOCAL	1	TPR
TCGA.AA.A00N.01A	1	186948405	192129441	13	1.3221	LARGE-GAIN	FOCAL	3	"BRINP3,PLA2G4A,RGS18"
TCGA.DY.A1DC	1	187656174	187661802	7	1.2541	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6459	1	188328542	189034775	188	0.7837	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4682	1	189276106	189523062	54	0.8206	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	1	190067660	193066663	50	1.169	LARGE-GAIN	FOCAL	9	"BRINP3,GLRX2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.CK.5914.01A	1	192985402	192997150	7	0.7009	LARGE-GAIN	FOCAL	1	UCHL5
TCGA.AA.A00N.01A	1	193119384	196759126	65	0.9348	LARGE-GAIN	FOCAL	5	"B3GALT2,CDC73,CFH,CFHR3,KCNT2"
TCGA.AD.6901	1	194329736	194384654	23	0.6904	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1H8	1	194518770	195052825	158	1.4363	LARGE-GAIN	FOCAL	0	None
TCGA.CK.4952.01A	1	195023920	195030241	4	2.5771	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1H8	1	195052936	196413569	390	1.7793	LARGE-GAIN	FOCAL	1	KCNT2
TCGA.F5.6811.01A	1	195830924	195853360	4	0.7371	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1H8	1	196569680	197059381	105	1.6475	LARGE-GAIN	FOCAL	9	"ASPM,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,F13B,KCNT2"
TCGA.AA.3861.01A	1	196648715	196973752	48	1.1419	LARGE-GAIN	FOCAL	6	"CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5"
TCGA.AA.A00N.01A	1	196926974	197065081	31	0.7666	LARGE-GAIN	FOCAL	4	"ASPM,CFHR2,CFHR5,F13B"
TCGA.AG.A01W.01A	1	196985122	198643541	25	0.7349	LARGE-GAIN	FOCAL	10	"ASPM,ATP6V1G3,C1orf53,CRB1,DENND1B,F13B,LHX9,NEK7,PTPRC,ZBTB41"
TCGA.CK.5914.01A	1	197008436	197086892	24	0.7352	LARGE-GAIN	FOCAL	2	"ASPM,F13B"
TCGA.DY.A1H8	1	197066073	198095799	223	1.985	LARGE-GAIN	FOCAL	6	"ASPM,C1orf53,CRB1,DENND1B,LHX9,ZBTB41"
TCGA.AA.A010.01A	1	197097573	197128438	14	0.9273	LARGE-GAIN	FOCAL	2	"ASPM,ZBTB41"
TCGA.CK.5914.01A	1	197479562	197586737	13	0.9145	LARGE-GAIN	FOCAL	1	DENND1B
TCGA.DY.A1DC	1	197565236	197599029	6	1.3365	LARGE-GAIN	FOCAL	1	DENND1B
TCGA.DY.A1H8	1	198095879	198290061	47	1.5513	LARGE-GAIN	FOCAL	1	NEK7
TCGA.DY.A1H8	1	198297849	199024572	211	2.1197	LARGE-GAIN	FOCAL	2	"ATP6V1G3,PTPRC"
TCGA.CK.5914.01A	1	198691519	198721328	14	0.9886	LARGE-GAIN	FOCAL	1	PTPRC
TCGA.DM.A28M.01A	1	198700705	198704239	4	2.035	LARGE-GAIN	FOCAL	1	PTPRC
TCGA.AA.A02H.01A	1	198717227	198827964	8	1.313	LARGE-GAIN	FOCAL	1	PTPRC
TCGA.AG.A01W.01A	1	199282830	199288265	7	0.8042	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	1	199446569	199452158	7	1.124	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	1	200826384	200826875	2	2.0101	LARGE-GAIN	FOCAL	1	CAMSAP2
TCGA.AG.A01W.01A	1	200971915	200992058	11	0.7812	LARGE-GAIN	FOCAL	1	KIF21B
TCGA.A6.3808.01A	1	200974436	201021632	16	1.4145	LARGE-GAIN	FOCAL	2	"CACNA1S,KIF21B"
TCGA.AA.A00N.01A	1	201017673	201039363	20	0.8136	LARGE-GAIN	FOCAL	1	CACNA1S
TCGA.AA.A010.01A	1	201115828	201328274	42	0.7765	LARGE-GAIN	FOCAL	4	"IGFN1,PKP1,TMEM9,TNNT2"
TCGA.AA.A00N.01A	1	201163234	201338862	51	0.8477	LARGE-GAIN	FOCAL	3	"IGFN1,PKP1,TNNT2"
TCGA.AG.A01W.01A	1	201198238	201244396	11	0.9634	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	1	201282282	201328274	13	0.7946	LARGE-GAIN	FOCAL	2	"PKP1,TNNT2"
TCGA.AA.A010.01A	1	201618087	201798341	29	0.863	LARGE-GAIN	FOCAL	2	"IPO9,NAV1"
TCGA.AA.A00N.01A	1	201709091	201762862	11	1.2488	LARGE-GAIN	FOCAL	1	NAV1
TCGA.CK.5914.01A	1	201798341	201839710	17	0.7052	LARGE-GAIN	FOCAL	1	IPO9
TCGA.AG.A00Y.01A	1	201972315	201973434	2	5.2808	LARGE-GAIN	FOCAL	1	RNPEP
TCGA.AA.A00N.01A	1	201974634	202096827	10	0.9005	LARGE-GAIN	FOCAL	3	"ELF3,GPR37L1,RNPEP"
TCGA.AG.3906.01A	1	202092050	202124608	11	0.9856	LARGE-GAIN	FOCAL	3	"ARL8A,GPR37L1,PTPN7"
TCGA.AA.A00N.01A	1	202204986	202287403	16	1.1133	LARGE-GAIN	FOCAL	1	LGR6
TCGA.AA.A010.01A	1	202273626	202317938	14	1.1843	LARGE-GAIN	FOCAL	3	"LGR6,PPP1R12B,UBE2T"
TCGA.AA.A010.01A	1	202406921	202418070	5	0.8805	LARGE-GAIN	FOCAL	1	PPP1R12B
TCGA.AA.A00N.01A	1	202457610	202574676	21	1.0368	LARGE-GAIN	FOCAL	2	"PPP1R12B,SYT2"
TCGA.A6.3808.01A	1	203028852	203455797	51	0.8222	LARGE-GAIN	FOCAL	9	"ADORA1,BTG2,CHI3L1,CHIT1,FMOD,MYBPH,MYOG,PPFIA4,PRELP"
TCGA.AA.A010.01A	1	203044665	203455797	43	0.7786	LARGE-GAIN	FOCAL	9	"ADORA1,BTG2,CHI3L1,CHIT1,FMOD,MYBPH,MYOG,PPFIA4,PRELP"
TCGA.AA.A00N.01A	1	203138344	203155660	17	0.8047	LARGE-GAIN	FOCAL	2	"CHI3L1,MYBPH"
TCGA.AA.3518	1	203174488	203180656	6	0.7687	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	203185970	203198666	11	1.7308	LARGE-GAIN	FOCAL	1	CHIT1
TCGA.CK.5914.01A	1	203185970	203198666	11	1.1694	LARGE-GAIN	FOCAL	1	CHIT1
TCGA.CK.5914.01A	1	203472651	203734425	24	0.8957	LARGE-GAIN	FOCAL	3	"ATP2B4,LAX1,OPTC"
TCGA.AA.A00N.01A	1	203678399	203696475	10	1.2808	LARGE-GAIN	FOCAL	1	ATP2B4
TCGA.AG.3906.01A	1	204115721	204129641	9	1.3334	LARGE-GAIN	FOCAL	2	"ETNK2,REN"
TCGA.AA.A010.01A	1	204159604	204400750	36	0.9158	LARGE-GAIN	FOCAL	5	"GOLT1A,KISS1,PIK3C2B,PLEKHA6,PPP1R15B"
TCGA.AA.A00N.01A	1	204168275	204438521	59	0.9021	LARGE-GAIN	FOCAL	4	"GOLT1A,PIK3C2B,PLEKHA6,PPP1R15B"
TCGA.AG.3909.01A	1	204418931	204428967	6	1.0185	LARGE-GAIN	FOCAL	1	PIK3C2B
TCGA.AA.3518	1	204427932	204446687	7	0.8604	LARGE-GAIN	FOCAL	1	PIK3C2B
TCGA.AA.A00N.01A	1	204586948	205156499	80	0.7163	LARGE-GAIN	FOCAL	6	"CNTN2,DSTYK,LRRN2,NFASC,RBBP5,TMEM81"
TCGA.AA.A010.01A	1	205038954	205042757	6	1.0197	LARGE-GAIN	FOCAL	1	CNTN2
TCGA.AA.A010.01A	1	205492258	205500401	13	0.7229	LARGE-GAIN	FOCAL	1	CDK18
TCGA.AA.A00N.01A	1	205812748	206137288	25	0.992	LARGE-GAIN	FOCAL	2	"PM20D1,SLC26A9"
TCGA.CK.5914.01A	1	205819025	206137288	20	0.7891	LARGE-GAIN	FOCAL	2	"PM20D1,SLC26A9"
TCGA.A6.3808.01A	1	206224400	206330969	15	0.6972	LARGE-GAIN	FOCAL	3	"AVPR1B,C1orf186,CTSE"
TCGA.CK.5914.01A	1	206241492	206626509	27	0.8319	LARGE-GAIN	FOCAL	5	"C1orf186,CTSE,SRGAP2,SRGAP2B,SRGAP2C"
TCGA.AA.A00N.01A	1	206317511	206658275	39	0.961	LARGE-GAIN	FOCAL	5	"CTSE,IKBKE,SRGAP2,SRGAP2B,SRGAP2C"
TCGA.AA.A00N.01A	1	206858528	207039610	21	1.0385	LARGE-GAIN	FOCAL	4	"IL10,IL19,IL20,MAPKAPK2"
TCGA.AG.3611.01A	1	206902341	206905870	7	0.7297	LARGE-GAIN	FOCAL	1	MAPKAPK2
TCGA.AA.A00N.01A	1	207103609	207200798	20	1.2168	LARGE-GAIN	FOCAL	3	"C1orf116,FCAMR,PIGR"
TCGA.CK.5914.01A	1	207105749	207200798	18	1.0183	LARGE-GAIN	FOCAL	3	"C1orf116,FCAMR,PIGR"
TCGA.AA.A00N.01A	1	207243578	207495072	23	0.8278	LARGE-GAIN	FOCAL	4	"C4BPA,C4BPB,CD55,PFKFB2"
TCGA.CK.5914.01A	1	207669573	207757977	16	0.6853	LARGE-GAIN	FOCAL	1	CR1
TCGA.AA.A00N.01A	1	207696927	207787735	17	1.0826	LARGE-GAIN	FOCAL	1	CR1
TCGA.AH.6544	1	208065165	208067650	3	1.6792	LARGE-GAIN	FOCAL	1	CD34
TCGA.AA.A010.01A	1	208072267	208257684	24	0.9139	LARGE-GAIN	FOCAL	2	"CD34,PLXNA2"
TCGA.AA.A00N.01A	1	208200549	209605437	33	1.0526	LARGE-GAIN	FOCAL	2	"MIR205HG,PLXNA2"
TCGA.CK.5914.01A	1	208227728	208315626	11	0.8735	LARGE-GAIN	FOCAL	1	PLXNA2
TCGA.DY.A1H8	1	209446728	209814878	187	0.7283	LARGE-GAIN	FOCAL	3	"CAMK1G,LAMB3,MIR205HG"
TCGA.AA.A010.01A	1	209785090	209849013	25	0.9568	LARGE-GAIN	FOCAL	3	"CAMK1G,G0S2,LAMB3"
TCGA.AG.3727	1	209788686	209804663	23	0.7761	LARGE-GAIN	FOCAL	1	LAMB3
TCGA.AA.3488	1	209800975	209801568	3	1.4095	LARGE-GAIN	FOCAL	1	LAMB3
TCGA.AA.A00N.01A	1	209933343	209935843	2	1.7134	LARGE-GAIN	FOCAL	1	TRAF3IP3
TCGA.AA.A00N.01A	1	210560760	211256075	17	1.5155	LARGE-GAIN	FOCAL	2	"HHAT,KCNH1"
TCGA.CK.5914.01A	1	210573765	210847618	8	1.1276	LARGE-GAIN	FOCAL	1	HHAT
TCGA.F4.6459	1	211602623	212584182	294	1.2326	LARGE-GAIN	FOCAL	8	"DTL,INTS7,LPGAT1,NEK2,PPP2R5A,RD3,SLC30A1,TMEM206"
TCGA.AA.A02K.01A	1	212583719	212615849	3	0.7251	LARGE-GAIN	FOCAL	2	"NENF,TMEM206"
TCGA.F4.6459	1	212586735	212625467	13	0.8204	LARGE-GAIN	FOCAL	2	"NENF,TMEM206"
TCGA.F4.6459	1	212626536	214135972	550	1.2496	LARGE-GAIN	FOCAL	10	"ANGEL2,ATF3,BATF3,FAM71A,FLVCR1,NSL1,RPS6KC1,SPATA45,TATDN3,VASH2"
TCGA.AA.3930.01A	1	213138991	213147250	5	0.6822	LARGE-GAIN	FOCAL	1	VASH2
TCGA.F4.6459	1	214135996	214145705	5	2.4828	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6459	1	214145730	214576512	171	1.2883	LARGE-GAIN	FOCAL	3	"PROX1,PTPN14,SMYD2"
TCGA.AG.A01W.01A	1	214318045	214328931	5	0.943	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	1	214584964	214828577	21	1.4544	LARGE-GAIN	FOCAL	2	"CENPF,PTPN14"
TCGA.AA.3862.01A	1	214637921	214832141	20	2.0615	LARGE-GAIN	FOCAL	2	"CENPF,PTPN14"
TCGA.A6.3808.01A	1	214830318	217804185	116	0.8507	LARGE-GAIN	FOCAL	6	"CENPF,ESRRG,GPATCH2,KCNK2,KCTD3,USH2A"
TCGA.DY.A1H8	1	215009373	215081933	27	1.1026	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1H8	1	215101479	215246835	83	1.2022	LARGE-GAIN	FOCAL	1	KCNK2
TCGA.AA.3509.01A	1	215768676	215799070	9	1.6038	LARGE-GAIN	FOCAL	2	"KCTD3,USH2A"
TCGA.AZ.4684.01A	1	215768676	217804185	95	0.8196	LARGE-GAIN	FOCAL	4	"ESRRG,GPATCH2,KCTD3,USH2A"
TCGA.AA.A00N.01A	1	215781312	218458612	103	0.9394	LARGE-GAIN	FOCAL	5	"ESRRG,GPATCH2,KCTD3,SPATA17,USH2A"
TCGA.AA.3509.01A	1	215932951	217804185	72	1.1383	LARGE-GAIN	FOCAL	3	"ESRRG,GPATCH2,USH2A"
TCGA.DM.A1HB	1	219797674	219813321	10	0.9513	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	220298532	220791605	52	0.7777	LARGE-GAIN	FOCAL	3	"IARS2,MARK1,RAB3GAP2"
TCGA.AG.A01W.01A	1	221230540	221234827	4	0.9356	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	221875727	222757442	21	0.7665	LARGE-GAIN	FOCAL	3	"DUSP10,HHIPL2,TAF1A"
TCGA.AA.A01Q.01A	1	222713355	222716889	3	0.9679	LARGE-GAIN	FOCAL	1	HHIPL2
TCGA.AA.3509.01A	1	222734659	222750735	6	2.0318	LARGE-GAIN	FOCAL	1	TAF1A
TCGA.AZ.4684.01A	1	222734659	222750735	6	1.6551	LARGE-GAIN	FOCAL	1	TAF1A
TCGA.AG.3906.01A	1	222794479	222805460	7	1.0306	LARGE-GAIN	FOCAL	1	MIA3
TCGA.AA.3693	1	222795117	222804082	3	1.206	LARGE-GAIN	FOCAL	1	MIA3
TCGA.AA.3848	1	222795117	222814441	6	0.8483	LARGE-GAIN	FOCAL	1	MIA3
TCGA.AA.3509.01A	1	222823915	222835336	9	1.3614	LARGE-GAIN	FOCAL	1	MIA3
TCGA.AZ.4684.01A	1	222823915	222835336	9	1.0569	LARGE-GAIN	FOCAL	1	MIA3
TCGA.AA.A010.01A	1	222867091	222902029	12	0.8204	LARGE-GAIN	FOCAL	2	"AIDA,BROX"
TCGA.AA.A010.01A	1	223566790	223715119	4	0.843	LARGE-GAIN	FOCAL	2	"CAPN8,CCDC185"
TCGA.DM.A1HB	1	223689013	223839375	22	0.7906	LARGE-GAIN	FOCAL	1	CAPN8
TCGA.AA.A010.01A	1	223810458	223841980	6	1.0526	LARGE-GAIN	FOCAL	1	CAPN8
TCGA.AG.3611.01A	1	224418877	224514043	20	0.6861	LARGE-GAIN	FOCAL	1	NVL
TCGA.AG.3906.01A	1	224599090	224619130	5	0.8407	LARGE-GAIN	FOCAL	1	WDR26
TCGA.AA.A00N.01A	1	224868607	225567814	82	0.7882	LARGE-GAIN	FOCAL	2	"CNIH3,DNAH14"
TCGA.AZ.4684.01A	1	225140347	225488524	54	0.8774	LARGE-GAIN	FOCAL	1	DNAH14
TCGA.AA.3509.01A	1	225142611	225488524	53	1.0716	LARGE-GAIN	FOCAL	1	DNAH14
TCGA.AA.3509.01A	1	225519087	225555479	12	0.9745	LARGE-GAIN	FOCAL	1	DNAH14
TCGA.AZ.4684.01A	1	225519087	225555479	12	0.7499	LARGE-GAIN	FOCAL	1	DNAH14
TCGA.AA.A00N.01A	1	225702270	225706861	4	1.9721	LARGE-GAIN	FOCAL	1	ENAH
TCGA.AA.A010.01A	1	226549101	226558086	9	0.7549	LARGE-GAIN	FOCAL	1	PARP1
TCGA.AA.A010.01A	1	226595472	226836336	12	0.7003	LARGE-GAIN	FOCAL	3	"C1orf95,ITPKB,PARP1"
TCGA.AG.A01W.01A	1	226622604	226624986	5	1.4811	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1D9	1	226678383	226682047	3	1.6181	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	1	226683250	226730435	18	0.8053	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	1	227181947	227843406	45	0.6828	LARGE-GAIN	FOCAL	2	"CDC42BPA,ZNF678"
TCGA.AA.A00N.01A	1	227213709	227279535	18	1.2304	LARGE-GAIN	FOCAL	1	CDC42BPA
TCGA.AA.3509.01A	1	227222309	227261912	10	1.5871	LARGE-GAIN	FOCAL	1	CDC42BPA
TCGA.AZ.4684.01A	1	227222309	227261912	10	1.42	LARGE-GAIN	FOCAL	1	CDC42BPA
TCGA.AA.3509.01A	1	227842020	227843406	3	2.3508	LARGE-GAIN	FOCAL	1	ZNF678
TCGA.AZ.4684.01A	1	227842020	227843406	3	1.9468	LARGE-GAIN	FOCAL	1	ZNF678
TCGA.AA.A010.01A	1	228003398	228033638	5	0.9216	LARGE-GAIN	FOCAL	1	PRSS38
TCGA.AA.3862.01A	1	228404697	228510989	44	1.4532	LARGE-GAIN	FOCAL	1	OBSCN
TCGA.AA.3939.01A	1	228430952	228456189	8	0.8567	LARGE-GAIN	FOCAL	1	OBSCN
TCGA.CM.6163	1	228968183	228972919	7	1.1481	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	1	229422172	229431538	3	0.8222	LARGE-GAIN	FOCAL	1	RAB4A
TCGA.AG.3891.01A	1	229763344	229767969	2	1.2721	LARGE-GAIN	FOCAL	1	URB2
TCGA.AA.A00N.01A	1	229773257	230513194	32	0.7676	LARGE-GAIN	FOCAL	3	"GALNT2,PGBD5,URB2"
TCGA.AA.A010.01A	1	229789958	230778317	28	0.8209	LARGE-GAIN	FOCAL	4	"COG2,GALNT2,PGBD5,URB2"
TCGA.AG.3898	1	229984912	230012315	9	0.9195	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	230819249	230979052	34	0.7145	LARGE-GAIN	FOCAL	4	"AGT,C1orf198,CAPN9,COG2"
TCGA.AA.A00N.01A	1	231335846	231351056	7	1.1685	LARGE-GAIN	FOCAL	1	TRIM67
TCGA.AA.A00N.01A	1	231696827	232650164	43	0.9569	LARGE-GAIN	FOCAL	3	"DISC1,SIPA1L2,TSNAX"
TCGA.AA.3952	1	231843961	232884234	541	0.9378	LARGE-GAIN	FOCAL	2	"DISC1,SIPA1L2"
TCGA.AA.3488	1	232350986	232379495	6	0.968	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01Q.01A	1	232561285	232596583	3	1.1701	LARGE-GAIN	FOCAL	1	SIPA1L2
TCGA.AA.3952	1	232887700	233261188	162	0.7106	LARGE-GAIN	FOCAL	3	"MAP10,NTPCR,PCNXL2"
TCGA.AA.A010.01A	1	234350186	234565786	24	0.7047	LARGE-GAIN	FOCAL	3	"COA6,SLC35F3,TARBP1"
TCGA.AA.3862.01A	1	234509924	235301127	40	1.3277	LARGE-GAIN	FOCAL	5	"COA6,IRF2BP2,RBM34,TARBP1,TOMM20"
TCGA.AG.3906.01A	1	234599532	234743243	7	0.9462	LARGE-GAIN	FOCAL	2	"IRF2BP2,TARBP1"
TCGA.AG.A01Y	1	234842931	235273193	144	1.6833	LARGE-GAIN	FOCAL	1	TOMM20
TCGA.AG.3611.01A	1	235324168	235383635	11	0.9124	LARGE-GAIN	FOCAL	2	"ARID4B,RBM34"
TCGA.AG.A01Y	1	235341009	235572668	37	0.8865	LARGE-GAIN	FOCAL	3	"ARID4B,GGPS1,TBCE"
TCGA.AA.3509.01A	1	235403580	235415993	3	1.3192	LARGE-GAIN	FOCAL	1	ARID4B
TCGA.AA.3518	1	235429906	235489183	11	0.7229	LARGE-GAIN	FOCAL	1	ARID4B
TCGA.AG.A00C.01A	1	235490135	235505885	5	0.6842	LARGE-GAIN	FOCAL	2	"ARID4B,GGPS1"
TCGA.AA.A010.01A	1	235564770	235613484	15	0.8283	LARGE-GAIN	FOCAL	2	"B3GALNT2,TBCE"
TCGA.AA.A00N.01A	1	235850201	235993488	44	0.8157	LARGE-GAIN	FOCAL	1	LYST
TCGA.AA.3509.01A	1	235875330	235940346	25	1.1448	LARGE-GAIN	FOCAL	1	LYST
TCGA.AZ.4684.01A	1	235875330	235940346	25	0.952	LARGE-GAIN	FOCAL	1	LYST
TCGA.AA.A010.01A	1	236143075	236195669	13	0.9322	LARGE-GAIN	FOCAL	1	NID1
TCGA.AZ.4684.01A	1	236735664	236748294	9	0.9312	LARGE-GAIN	FOCAL	1	HEATR1
TCGA.AA.3509.01A	1	236735664	236751194	13	1.4908	LARGE-GAIN	FOCAL	1	HEATR1
TCGA.AZ.4684.01A	1	236749093	236751194	4	1.9947	LARGE-GAIN	FOCAL	1	HEATR1
TCGA.AA.A010.01A	1	236889186	236969391	20	0.888	LARGE-GAIN	FOCAL	2	"ACTN2,MTR"
TCGA.AA.A00N.01A	1	237052459	237794700	48	0.9725	LARGE-GAIN	FOCAL	3	"MT1HL1,MTR,RYR2"
TCGA.AA.A00N.01A	1	237862208	238053719	51	0.7511	LARGE-GAIN	FOCAL	2	"RYR2,ZP4"
TCGA.AZ.4684.01A	1	237880446	237896944	8	1.2711	LARGE-GAIN	FOCAL	1	RYR2
TCGA.AZ.6599	1	238581918	238582364	3	1.0393	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	1	240082201	240090432	5	1.1696	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	240286432	240601322	16	0.8863	LARGE-GAIN	FOCAL	1	FMN2
TCGA.RU.A8FL	1	241581603	241586017	4	0.9166	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	241712112	241767510	17	0.6812	LARGE-GAIN	FOCAL	2	"KMO,OPN3"
TCGA.AA.A00N.01A	1	241842755	241964384	23	0.7352	LARGE-GAIN	FOCAL	1	WDR64
TCGA.AA.3862.01A	1	242383260	243652275	40	1.3696	LARGE-GAIN	FOCAL	4	"AKT3,CEP170,PLD5,SDCCAG8"
TCGA.AA.A00N.01A	1	243708757	243828046	9	0.8394	LARGE-GAIN	FOCAL	1	AKT3
TCGA.DM.A1HB	1	244379431	244398134	18	0.9174	LARGE-GAIN	FOCAL	0	None
TCGA.AH.6549.01A	1	244614890	244624654	2	1.1046	LARGE-GAIN	FOCAL	1	ADSS
TCGA.AA.3870	1	245452845	245882096	191	0.7503	LARGE-GAIN	FOCAL	1	KIF26B
TCGA.AA.3861.01A	1	246940188	247163176	43	1.2084	LARGE-GAIN	FOCAL	2	"AHCTF1,ZNF695"
TCGA.AA.3862.01A	1	246940188	247163176	43	1.6072	LARGE-GAIN	FOCAL	2	"AHCTF1,ZNF695"
TCGA.AA.A010.01A	1	247012866	247040250	11	0.9026	LARGE-GAIN	FOCAL	1	AHCTF1
TCGA.AA.A00A.01A	1	247150519	247163176	2	0.8379	LARGE-GAIN	FOCAL	1	ZNF695
TCGA.AA.A00D.01A	1	247150519	247163176	3	1.079	LARGE-GAIN	FOCAL	1	ZNF695
TCGA.AA.A00Q.01A	1	247150519	247163176	3	1.1252	LARGE-GAIN	FOCAL	1	ZNF695
TCGA.AA.3930.01A	1	247202046	247267201	7	1.0473	LARGE-GAIN	FOCAL	2	"ZNF669,ZNF670"
TCGA.AA.3815.01A	1	247263709	247265311	3	1.1703	LARGE-GAIN	FOCAL	1	ZNF669
TCGA.AA.3967.01A	1	247263709	247265311	3	1.4867	LARGE-GAIN	FOCAL	1	ZNF669
TCGA.AA.A010.01A	1	247582055	247614324	12	0.9013	LARGE-GAIN	FOCAL	1	NLRP3
TCGA.CK.6746	2	174271	224085	18	0.7477	LARGE-GAIN	FOCAL	1	SH3YL1
TCGA.DM.A1HB	2	2775304	2808618	13	0.8237	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	2	3624120	3651888	5	0.6807	LARGE-GAIN	FOCAL	2	"COLEC11,RPS7"
TCGA.DM.A1HB	2	3694993	3712047	16	0.8985	LARGE-GAIN	FOCAL	1	ALLC
TCGA.DM.A1HB	2	4278837	4287771	7	1.0973	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	2	5865946	5875054	9	1.1485	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	2	6100996	6119269	8	1.0383	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	2	8870906	8936852	19	0.9351	LARGE-GAIN	FOCAL	1	KIDINS220
TCGA.AA.A00L.01A	2	9458637	9467896	4	0.7031	LARGE-GAIN	FOCAL	1	ASAP2
TCGA.CK.5914.01A	2	9637204	9983593	19	0.7807	LARGE-GAIN	FOCAL	3	"ADAM17,TAF1B,YWHAQ"
TCGA.AA.A00F.01A	2	10580803	10585018	7	0.719	LARGE-GAIN	FOCAL	1	ODC1
TCGA.AG.3906.01A	2	10942578	11312012	7	0.9796	LARGE-GAIN	FOCAL	4	"C2orf50,KCNF1,PDIA6,PQLC3"
TCGA.AA.A00N.01A	2	11337615	11375829	20	0.7956	LARGE-GAIN	FOCAL	1	ROCK2
TCGA.AA.A00N.01A	2	15416948	15651329	36	0.8551	LARGE-GAIN	FOCAL	1	NBAS
TCGA.AG.3906.01A	2	15736793	16734139	23	0.8	LARGE-GAIN	FOCAL	3	"DDX1,FAM49A,MYCN"
TCGA.F4.6704	2	16071092	16229031	48	1.9375	LARGE-GAIN	FOCAL	1	MYCN
TCGA.CK.5914.01A	2	16734139	16746865	8	0.7503	LARGE-GAIN	FOCAL	1	FAM49A
TCGA.CK.5914.01A	2	17773320	17912956	26	0.9236	LARGE-GAIN	FOCAL	2	"SMC6,VSNL1"
TCGA.AG.A023.01A	2	17851653	17902180	16	0.6781	LARGE-GAIN	FOCAL	1	SMC6
TCGA.DM.A1HB	2	19948914	19952127	12	0.9037	LARGE-GAIN	FOCAL	0	None
TCGA.5M.AAT4	2	20763910	20769927	4	1.207	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3967.01A	2	21246360	21252773	7	0.7867	LARGE-GAIN	FOCAL	1	APOB
TCGA.AA.3509.01A	2	21360298	21365488	3	2.5024	LARGE-GAIN	FOCAL	1	TDRD15
TCGA.AZ.4684.01A	2	21360298	21365488	3	2.6665	LARGE-GAIN	FOCAL	1	TDRD15
TCGA.DM.A1HB	2	22799309	22845818	14	0.8458	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3534	2	23539160	23543643	3	1.8901	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	23974850	23988324	6	1.0204	LARGE-GAIN	FOCAL	1	ATAD2B
TCGA.AA.3509.01A	2	23974850	24033139	11	0.9834	LARGE-GAIN	FOCAL	1	ATAD2B
TCGA.AZ.4684.01A	2	23974850	24033139	11	1.0417	LARGE-GAIN	FOCAL	1	ATAD2B
TCGA.AA.A00N.01A	2	23980239	24056741	13	0.7833	LARGE-GAIN	FOCAL	1	ATAD2B
TCGA.AG.3906.01A	2	24092501	24098670	2	0.6918	LARGE-GAIN	FOCAL	1	ATAD2B
TCGA.AG.3891.01A	2	24181105	24207495	5	0.7016	LARGE-GAIN	FOCAL	1	UBXN2A
TCGA.CK.5914.01A	2	24433611	24494587	15	0.8407	LARGE-GAIN	FOCAL	1	ITSN2
TCGA.CK.5914.01A	2	25194629	25326478	4	1.1862	LARGE-GAIN	FOCAL	2	"DNAJC27,EFR3B"
TCGA.AG.3909.01A	2	25610106	25678227	8	0.8394	LARGE-GAIN	FOCAL	1	DTNB
TCGA.CK.5914.01A	2	25610106	25678227	8	1.0537	LARGE-GAIN	FOCAL	1	DTNB
TCGA.AA.A01Q.01A	2	25610106	26151797	5	0.8039	LARGE-GAIN	FOCAL	3	"ASXL2,DTNB,KIF3C"
TCGA.AG.3906.01A	2	26414091	26426889	8	1.1276	LARGE-GAIN	FOCAL	1	HADHA
TCGA.AA.A010.01A	2	26454976	26568942	34	0.7287	LARGE-GAIN	FOCAL	3	"ADGRF3,HADHA,HADHB"
TCGA.AG.A00Y.01A	2	26531864	26532762	3	4.4236	LARGE-GAIN	FOCAL	1	ADGRF3
TCGA.AA.A00N.01A	2	26531864	26568942	16	1.1042	LARGE-GAIN	FOCAL	1	ADGRF3
TCGA.CK.5914.01A	2	26531864	26568942	16	0.8721	LARGE-GAIN	FOCAL	1	ADGRF3
TCGA.AG.A00C.01A	2	26587114	26644119	11	0.6907	LARGE-GAIN	FOCAL	2	"DRC1,EPT1"
TCGA.AG.3906.01A	2	26587653	26609185	7	0.7668	LARGE-GAIN	FOCAL	1	EPT1
TCGA.AA.3930.01A	2	26673404	26676140	2	1.8199	LARGE-GAIN	FOCAL	1	DRC1
TCGA.AA.3862.01A	2	27324955	27428841	30	1.2432	LARGE-GAIN	FOCAL	6	"ABHD1,CGREF1,PREB,PRR30,SLC5A6,TCF23"
TCGA.AA.3862.01A	2	27551221	27591195	17	1.4747	LARGE-GAIN	FOCAL	2	"EIF2B4,GTF3C2"
TCGA.AG.3906.01A	2	27587218	27609892	30	1.0095	LARGE-GAIN	FOCAL	4	"EIF2B4,PPM1G,SNX17,ZNF513"
TCGA.AG.3906.01A	2	27656159	27659582	6	1.6539	LARGE-GAIN	FOCAL	1	NRBP1
TCGA.AG.3891.01A	2	27656528	27657316	3	0.9641	LARGE-GAIN	FOCAL	1	NRBP1
TCGA.AG.3906.01A	2	27660112	27672815	16	1.0161	LARGE-GAIN	FOCAL	3	"IFT172,KRTCAP3,NRBP1"
TCGA.AA.A010.01A	2	27849778	27861000	11	0.8674	LARGE-GAIN	FOCAL	2	"CCDC121,GPN1"
TCGA.AA.A010.01A	2	27870661	27892083	12	0.8416	LARGE-GAIN	FOCAL	3	"GPN1,SLC4A1AP,SUPT7L"
TCGA.CK.5914.01A	2	28032790	29001167	91	0.7654	LARGE-GAIN	FOCAL	5	"BRE,FOSL2,PLB1,PPP1CB,RBKS"
TCGA.AA.A010.01A	2	28754922	28974917	52	0.889	LARGE-GAIN	FOCAL	2	"PLB1,PPP1CB"
TCGA.AG.3909.01A	2	28813922	28865683	30	0.8581	LARGE-GAIN	FOCAL	1	PLB1
TCGA.AA.A00N.01A	2	28824699	28865683	21	1.1337	LARGE-GAIN	FOCAL	1	PLB1
TCGA.CK.5914.01A	2	29136917	29226316	19	0.8473	LARGE-GAIN	FOCAL	2	"FAM179A,WDR43"
TCGA.AA.A010.01A	2	29217615	29296308	24	0.9495	LARGE-GAIN	FOCAL	2	"C2orf71,FAM179A"
TCGA.AA.A00Q.01A	2	29225383	29246958	4	0.7876	LARGE-GAIN	FOCAL	1	FAM179A
TCGA.CK.5914.01A	2	29358377	29940397	39	0.9956	LARGE-GAIN	FOCAL	2	"ALK,CLIP4"
TCGA.AA.A00N.01A	2	29380039	29940397	34	0.8583	LARGE-GAIN	FOCAL	2	"ALK,CLIP4"
TCGA.AG.3909.01A	2	29416040	29940397	27	0.7989	LARGE-GAIN	FOCAL	1	ALK
TCGA.CK.5914.01A	2	30828843	32188176	117	0.8315	LARGE-GAIN	FOCAL	8	"CAPN13,CAPN14,EHD3,GALNT14,LCLAT1,MEMO1,SRD5A2,XDH"
TCGA.AA.3930.01A	2	31409226	31428059	14	0.6808	LARGE-GAIN	FOCAL	1	CAPN14
TCGA.AA.A00N.01A	2	31472185	31625865	38	1.2028	LARGE-GAIN	FOCAL	2	"EHD3,XDH"
TCGA.AA.A00N.01A	2	31628703	32235189	19	0.7987	LARGE-GAIN	FOCAL	3	"MEMO1,SRD5A2,XDH"
TCGA.AA.3862.01A	2	32093402	32157074	9	1.9042	LARGE-GAIN	FOCAL	1	MEMO1
TCGA.AZ.4684.01A	2	32108397	32148672	6	1.1618	LARGE-GAIN	FOCAL	1	MEMO1
TCGA.AG.A00C.01A	2	32515500	32523244	3	0.9739	LARGE-GAIN	FOCAL	1	YIPF4
TCGA.AG.A01W.01A	2	32520621	32532343	5	0.7715	LARGE-GAIN	FOCAL	1	YIPF4
TCGA.CK.5914.01A	2	32688237	32690111	3	0.8262	LARGE-GAIN	FOCAL	1	BIRC6
TCGA.CK.5914.01A	2	32800176	32853312	10	0.8746	LARGE-GAIN	FOCAL	2	"BIRC6,TTC27"
TCGA.CK.5914.01A	2	36623725	36785517	24	0.8169	LARGE-GAIN	FOCAL	2	"CRIM1,FEZ2"
TCGA.AA.A00N.01A	2	36668354	36764466	14	1.4628	LARGE-GAIN	FOCAL	1	CRIM1
TCGA.AA.3850	2	36802801	36803889	6	1.07175	LARGE-GAIN	FOCAL	1	FEZ2
TCGA.CK.5914.01A	2	37276747	37297331	12	0.7003	LARGE-GAIN	FOCAL	1	HEATR5B
TCGA.AA.A010.01A	2	37441966	37463203	10	0.8392	LARGE-GAIN	FOCAL	2	"CEBPZ,NDUFAF7"
TCGA.AA.3509.01A	2	38177580	38201189	4	1.4784	LARGE-GAIN	FOCAL	1	RMDN2
TCGA.AZ.4684.01A	2	38177580	38201189	4	1.5141	LARGE-GAIN	FOCAL	1	RMDN2
TCGA.CK.5914.01A	2	38604238	38805024	8	1.3369	LARGE-GAIN	FOCAL	2	"ATL2,HNRNPLL"
TCGA.AA.3509.01A	2	38796233	38804548	4	1.4416	LARGE-GAIN	FOCAL	1	HNRNPLL
TCGA.AZ.4684.01A	2	38796233	38804548	4	1.5222	LARGE-GAIN	FOCAL	1	HNRNPLL
TCGA.AG.A01W.01A	2	38825731	38831790	8	0.719	LARGE-GAIN	FOCAL	1	HNRNPLL
TCGA.CK.5914.01A	2	38893257	38960569	8	1.013	LARGE-GAIN	FOCAL	1	GALM
TCGA.AA.3941	2	38955865	38990459	5	1.3613	LARGE-GAIN	FOCAL	2	"GALM,SRSF7"
TCGA.AG.A01W.01A	2	39091180	39103214	6	0.8703	LARGE-GAIN	FOCAL	2	"DHX57,MORN2"
TCGA.AZ.4684.01A	2	39200805	39285762	21	0.7762	LARGE-GAIN	FOCAL	2	"ARHGEF33,SOS1"
TCGA.CK.5914.01A	2	39212916	39251129	15	1.1853	LARGE-GAIN	FOCAL	1	SOS1
TCGA.AA.3509.01A	2	39240584	39278238	7	1.3256	LARGE-GAIN	FOCAL	1	SOS1
TCGA.AZ.4684.01A	2	39542401	39560605	5	1.3877	LARGE-GAIN	FOCAL	1	MAP4K3
TCGA.AA.A00N.01A	2	40006205	40405478	10	1.1532	LARGE-GAIN	FOCAL	2	"SLC8A1,THUMPD2"
TCGA.CK.5914.01A	2	40342381	42165651	11	0.8598	LARGE-GAIN	FOCAL	2	"C2orf91,SLC8A1"
TCGA.AG.3906.01A	2	42797509	42836546	3	1.4141	LARGE-GAIN	FOCAL	1	MTA3
TCGA.AA.3850	2	43198511	43229908	14	0.86545	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	2	43458047	43547536	8	0.862	LARGE-GAIN	FOCAL	1	THADA
TCGA.AA.A010.01A	2	44049888	44053469	4	0.7922	LARGE-GAIN	FOCAL	1	ABCG5
TCGA.AA.A010.01A	2	44055085	44079446	9	1.4755	LARGE-GAIN	FOCAL	2	"ABCG5,ABCG8"
TCGA.A6.3808.01A	2	44527072	45828993	52	0.778	LARGE-GAIN	FOCAL	6	"CAMKMT,PREPL,SIX2,SIX3,SLC3A1,SRBD1"
TCGA.AA.A00N.01A	2	45616402	46707604	39	0.8007	LARGE-GAIN	FOCAL	4	"EPAS1,PRKCE,SRBD1,TMEM247"
TCGA.AA.A010.01A	2	46603637	46711331	11	1.3202	LARGE-GAIN	FOCAL	2	"EPAS1,TMEM247"
TCGA.AA.A00N.01A	2	47185562	47300791	19	0.7554	LARGE-GAIN	FOCAL	1	TTC7A
TCGA.AA.A010.01A	2	47202062	47357021	21	0.7207	LARGE-GAIN	FOCAL	2	"C2orf61,TTC7A"
TCGA.AA.A024.01A	2	47277039	47278834	2	3.2034	LARGE-GAIN	FOCAL	1	TTC7A
TCGA.A6.3808.01A	2	48898698	53994997	66	0.7836	LARGE-GAIN	FOCAL	8	"ASB3,CHAC2,FSHR,GPR75-ASB3,GTF2A1L,LHCGR,NRXN1,STON1-GTF2A1L"
TCGA.AA.3693	2	48948855	48954904	3	1.4356	LARGE-GAIN	FOCAL	2	"LHCGR,STON1-GTF2A1L"
TCGA.CK.5914.01A	2	49241946	51152984	34	0.8258	LARGE-GAIN	FOCAL	2	"FSHR,NRXN1"
TCGA.AA.A010.01A	2	51253458	54035394	24	0.886	LARGE-GAIN	FOCAL	5	"ASB3,CHAC2,ERLEC1,GPR75-ASB3,NRXN1"
TCGA.A6.2681	2	53051472	53057923	12	0.6937	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01S	2	53592245	53594232	3	2.11415	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	54112768	54128440	14	0.713	LARGE-GAIN	FOCAL	1	PSME4
TCGA.AA.A00N.01A	2	54826198	55237138	81	0.7964	LARGE-GAIN	FOCAL	3	"EML6,RTN4,SPTBN1"
TCGA.AA.3930.01A	2	55175959	55181101	3	1.239	LARGE-GAIN	FOCAL	1	EML6
TCGA.AA.A00N.01A	2	55402889	55408689	4	0.7424	LARGE-GAIN	FOCAL	1	CLHC1
TCGA.AG.3906.01A	2	55844239	55887259	12	0.713	LARGE-GAIN	FOCAL	2	"PNPT1,SMEK2"
TCGA.AZ.4684.01A	2	56602904	58421290	22	1.2179	LARGE-GAIN	FOCAL	3	"CCDC85A,FANCL,VRK2"
TCGA.AA.3509.01A	2	56602904	58449030	25	1.025	LARGE-GAIN	FOCAL	3	"CCDC85A,FANCL,VRK2"
TCGA.DM.A28M.01A	2	56611389	58390530	20	0.8082	LARGE-GAIN	FOCAL	3	"CCDC85A,FANCL,VRK2"
TCGA.AA.3850	2	60112224	60114443	6	0.80405	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	2	61169458	61275635	22	0.7371	LARGE-GAIN	FOCAL	2	"PEX13,PUS10"
TCGA.AA.A00N.01A	2	61438869	61597416	46	0.6793	LARGE-GAIN	FOCAL	1	USP34
TCGA.AA.3861.01A	2	61448590	61720981	65	0.8556	LARGE-GAIN	FOCAL	2	"USP34,XPO1"
TCGA.AG.A01W.01A	2	61501338	61551223	2	0.8599	LARGE-GAIN	FOCAL	1	USP34
TCGA.AG.3906.01A	2	61705928	61711035	5	0.9841	LARGE-GAIN	FOCAL	1	XPO1
TCGA.AA.A00N.01A	2	63169853	63223741	10	1.0443	LARGE-GAIN	FOCAL	1	EHBP1
TCGA.AA.A00N.01A	2	63348979	63822509	27	0.8008	LARGE-GAIN	FOCAL	2	"MDH1,WDPCP"
TCGA.AG.3909.01A	2	63815277	63816404	3	0.8584	LARGE-GAIN	FOCAL	2	"MDH1,WDPCP"
TCGA.AA.A00N.01A	2	64139423	64160850	8	1.1188	LARGE-GAIN	FOCAL	1	VPS54
TCGA.DM.A1DA	2	64312181	64918069	235	0.9821	LARGE-GAIN	FOCAL	4	"AFTPH,LGALSL,PELI1,SERTAD2"
TCGA.AG.3891.01A	2	64682432	64685382	3	0.7512	LARGE-GAIN	FOCAL	1	LGALSL
TCGA.AG.3906.01A	2	64682432	64685382	3	1.6374	LARGE-GAIN	FOCAL	1	LGALSL
TCGA.AG.3909.01A	2	65245158	65299227	6	0.7566	LARGE-GAIN	FOCAL	2	"CEP68,SLC1A4"
TCGA.AA.A00D.01A	2	66739251	66794525	2	1.121	LARGE-GAIN	FOCAL	1	MEIS1
TCGA.CK.5914.01A	2	68592417	68622795	9	1.1329	LARGE-GAIN	FOCAL	1	PLEK
TCGA.AA.A00N.01A	2	68794410	69475263	51	0.8049	LARGE-GAIN	FOCAL	7	"ANTXR1,APLF,ARHGAP25,BMP10,GKN1,GKN2,PROKR1"
TCGA.CK.5914.01A	2	68882355	69590628	63	0.7182	LARGE-GAIN	FOCAL	7	"ANTXR1,ARHGAP25,BMP10,GFPT1,GKN1,GKN2,PROKR1"
TCGA.AA.A00N.01A	2	69664423	70037678	28	0.9314	LARGE-GAIN	FOCAL	3	"AAK1,ANXA4,NFU1"
TCGA.CK.5914.01A	2	69664423	70037678	28	0.804	LARGE-GAIN	FOCAL	3	"AAK1,ANXA4,NFU1"
TCGA.AA.A010.01A	2	70524402	70933307	24	1.1445	LARGE-GAIN	FOCAL	3	"ADD2,FAM136A,TGFA"
TCGA.CK.5914.01A	2	70529004	70910675	14	1.3329	LARGE-GAIN	FOCAL	3	"ADD2,FAM136A,TGFA"
TCGA.AG.3909.01A	2	70529004	70919488	17	0.8679	LARGE-GAIN	FOCAL	3	"ADD2,FAM136A,TGFA"
TCGA.AA.A00N.01A	2	70529004	70933307	22	1.041	LARGE-GAIN	FOCAL	3	"ADD2,FAM136A,TGFA"
TCGA.AG.A00C.01A	2	71004716	71014764	3	0.6883	LARGE-GAIN	FOCAL	1	FIGLA
TCGA.CK.5914.01A	2	71036354	71170716	16	0.8268	LARGE-GAIN	FOCAL	4	"ATP6V1B1,CD207,CLEC4F,VAX2"
TCGA.AA.A010.01A	2	71221761	71361050	16	0.7704	LARGE-GAIN	FOCAL	4	"MCEE,MPHOSPH10,NAGK,TEX261"
TCGA.CK.5914.01A	2	71615715	71622289	3	1.3692	LARGE-GAIN	FOCAL	1	ZNF638
TCGA.AA.A010.01A	2	73188223	73250234	11	0.8306	LARGE-GAIN	FOCAL	1	SFXN5
TCGA.AG.3906.01A	2	73490774	73497901	5	1.3028	LARGE-GAIN	FOCAL	1	FBXO41
TCGA.AA.A00N.01A	2	73646249	74184204	64	0.6936	LARGE-GAIN	FOCAL	9	"ACTG2,ALMS1,C2orf78,DGUOK,DUSP11,NAT8,NAT8B,STAMBP,TPRKB"
TCGA.AA.A010.01A	2	73716712	74072243	35	0.7889	LARGE-GAIN	FOCAL	7	"ALMS1,C2orf78,DUSP11,NAT8,NAT8B,STAMBP,TPRKB"
TCGA.AA.A010.01A	2	74128399	74153991	10	0.8742	LARGE-GAIN	FOCAL	2	"ACTG2,DGUOK"
TCGA.AG.A01W.01A	2	74179923	74187079	6	0.9184	LARGE-GAIN	FOCAL	1	DGUOK
TCGA.AA.A010.01A	2	74454032	74649234	52	0.8114	LARGE-GAIN	FOCAL	4	"C2orf81,DCTN1,SLC4A5,WDR54"
TCGA.CK.5914.01A	2	74489211	74590090	10	1.089	LARGE-GAIN	FOCAL	2	"DCTN1,SLC4A5"
TCGA.AA.A010.01A	2	74834145	75874178	45	0.7339	LARGE-GAIN	FOCAL	7	"EVA1A,HK2,M1AP,MRPL19,POLE4,SEMA4F,TACR1"
TCGA.AG.A01W.01A	2	75039331	75040674	3	1.0383	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	2	75276532	75873895	8	0.7857	LARGE-GAIN	FOCAL	2	"EVA1A,TACR1"
TCGA.CK.5914.01A	2	75276532	75874178	9	1.0508	LARGE-GAIN	FOCAL	3	"EVA1A,MRPL19,TACR1"
TCGA.CK.5914.01A	2	75937690	79386392	24	1.1716	LARGE-GAIN	FOCAL	6	"GCFC2,LRRTM4,REG1A,REG1B,REG3A,REG3G"
TCGA.AA.A00N.01A	2	75937690	80136725	31	0.9186	LARGE-GAIN	FOCAL	7	"CTNNA2,GCFC2,LRRTM4,REG1A,REG1B,REG3A,REG3G"
TCGA.CM.5349	2	77917058	77921633	3	1.3051	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	2	79225544	79226136	4	1.3779	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	2	79971465	80136725	5	0.948	LARGE-GAIN	FOCAL	1	CTNNA2
TCGA.DM.A1HB	2	80081855	80086474	5	1.0399	LARGE-GAIN	FOCAL	1	CTNNA2
TCGA.DM.A1HB	2	80300107	80330079	11	0.9029	LARGE-GAIN	FOCAL	1	CTNNA2
TCGA.AG.A01W.01A	2	85470326	85471396	3	0.8618	LARGE-GAIN	FOCAL	1	TCF7L1
TCGA.AA.3850	2	85530560	85569293	11	1.02165	LARGE-GAIN	FOCAL	3	"RETSAT,TCF7L1,TGOLN2"
TCGA.CK.5914.01A	2	85590171	85766360	24	0.8899	LARGE-GAIN	FOCAL	4	"CAPG,ELMOD3,MAT2A,SH2D6"
TCGA.CK.5914.01A	2	86691129	86756304	19	0.8066	LARGE-GAIN	FOCAL	3	"CHMP3,KDM3A,RNF103-CHMP3"
TCGA.AA.A00N.01A	2	86701914	86737429	15	0.7876	LARGE-GAIN	FOCAL	3	"CHMP3,KDM3A,RNF103-CHMP3"
TCGA.G4.6295	2	87071350	87960587	13	0.7685	LARGE-GAIN	FOCAL	5	"CD8B,PLGLB1,PLGLB2,RGPD1,RGPD2"
TCGA.AG.A01W.01A	2	88253735	88259391	4	1.286	LARGE-GAIN	FOCAL	1	RGPD1
TCGA.AA.A00N.01A	2	88405802	88427404	7	1.2614	LARGE-GAIN	FOCAL	2	"FABP1,SMYD1"
TCGA.CK.5914.01A	2	88405802	88427404	7	1.2	LARGE-GAIN	FOCAL	2	"FABP1,SMYD1"
TCGA.AA.A01F.01A	2	88472633	88478275	4	0.8244	LARGE-GAIN	FOCAL	1	THNSL2
TCGA.AG.A016.01A	2	88472633	88478275	4	0.7562	LARGE-GAIN	FOCAL	1	THNSL2
TCGA.CK.5914.01A	2	88870341	88894947	12	1.0271	LARGE-GAIN	FOCAL	1	EIF2AK3
TCGA.AG.A01W.01A	2	89120791	89126951	3	0.9637	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	2	89156827	90248896	67	1.2674	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	89185015	90060711	48	1.381	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	2	89265733	90248896	63	0.7845	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3862.01A	2	89265928	95541281	61	1.9028	LARGE-GAIN	FOCAL	1	TEKT4
TCGA.AA.3861.01A	2	89266131	95541281	58	1.6737	LARGE-GAIN	FOCAL	1	TEKT4
TCGA.CK.5914.01A	2	90121589	90259927	14	1.3995	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	94901026	95055260	7	0.8227	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	95304873	95308137	7	0.8465	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	2	95814975	95818831	4	1.0852	LARGE-GAIN	FOCAL	1	ZNF514
TCGA.AA.A00D.01A	2	95846807	95940282	2	0.9752	LARGE-GAIN	FOCAL	2	"PROM2,ZNF2"
TCGA.AA.3861.01A	2	96078174	96781493	13	2.1755	LARGE-GAIN	FOCAL	5	"ADRA2B,FAHD2A,GPAT2,TRIM43,TRIM43B"
TCGA.AA.3862.01A	2	96078174	96781493	14	2.3725	LARGE-GAIN	FOCAL	5	"ADRA2B,FAHD2A,GPAT2,TRIM43,TRIM43B"
TCGA.AG.A01W.01A	2	96395295	96624987	14	0.7086	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	96717240	96725452	10	0.8572	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	96791175	96861949	17	0.7346	LARGE-GAIN	FOCAL	3	"ASTL,DUSP2,STARD7"
TCGA.CK.5914.01A	2	97261259	97274579	9	1.3575	LARGE-GAIN	FOCAL	1	KANSL3
TCGA.AA.A00N.01A	2	97261259	97278505	14	1.0519	LARGE-GAIN	FOCAL	1	KANSL3
TCGA.AG.3909.01A	2	97261259	97285079	16	0.7222	LARGE-GAIN	FOCAL	1	KANSL3
TCGA.CK.5914.01A	2	97275169	97335817	24	0.6891	LARGE-GAIN	FOCAL	2	"FER1L5,KANSL3"
TCGA.AA.A010.01A	2	97351630	97364356	13	0.8351	LARGE-GAIN	FOCAL	1	FER1L5
TCGA.AG.3906.01A	2	97426718	97482378	8	1.224	LARGE-GAIN	FOCAL	2	"CNNM3,CNNM4"
TCGA.AA.A010.01A	2	97568314	98127609	20	0.7337	LARGE-GAIN	FOCAL	4	"ANKRD36,ANKRD36B,FAHD2B,FAM178B"
TCGA.AA.3861.01A	2	97586854	97779440	17	0.681	LARGE-GAIN	FOCAL	3	"ANKRD36,FAHD2B,FAM178B"
TCGA.AA.3861.01A	2	97783753	98201400	14	2.2882	LARGE-GAIN	FOCAL	2	"ANKRD36,ANKRD36B"
TCGA.AA.3862.01A	2	97783753	98201400	10	2.6457	LARGE-GAIN	FOCAL	2	"ANKRD36,ANKRD36B"
TCGA.CK.5914.01A	2	98127609	98173338	13	1.8668	LARGE-GAIN	FOCAL	1	ANKRD36B
TCGA.AZ.4684.01A	2	98171493	98196893	5	1.2105	LARGE-GAIN	FOCAL	1	ANKRD36B
TCGA.AZ.4684.01A	2	99636696	99725776	12	0.8665	LARGE-GAIN	FOCAL	1	TSGA10
TCGA.AA.A00N.01A	2	99797263	99912026	17	0.8187	LARGE-GAIN	FOCAL	4	"LYG1,LYG2,MITD1,MRPL30"
TCGA.AG.3906.01A	2	100194739	100210206	5	1.1519	LARGE-GAIN	FOCAL	1	AFF3
TCGA.AA.A00N.01A	2	101086887	101098656	8	0.8612	LARGE-GAIN	FOCAL	1	NMS
TCGA.AG.3909.01A	2	101086887	101099624	9	0.7096	LARGE-GAIN	FOCAL	1	NMS
TCGA.AA.A00N.01A	2	101643793	101706664	13	0.6883	LARGE-GAIN	FOCAL	1	TBC1D8
TCGA.AA.A00N.01A	2	102440373	102626006	31	0.9924	LARGE-GAIN	FOCAL	2	"IL1R2,MAP4K4"
TCGA.AG.3909.01A	2	105914921	106002771	11	0.6876	LARGE-GAIN	FOCAL	3	"C2orf49,FHL2,TGFBRAP1"
TCGA.AA.3982	2	106488410	106489536	3	1.5963	LARGE-GAIN	FOCAL	1	NCK2
TCGA.AA.3861.01A	2	106782457	107073440	11	1.9382	LARGE-GAIN	FOCAL	2	"RGPD3,UXS1"
TCGA.AA.3862.01A	2	106782457	107073440	11	2.0236	LARGE-GAIN	FOCAL	2	"RGPD3,UXS1"
TCGA.CK.5914.01A	2	107021589	107049665	8	1.2993	LARGE-GAIN	FOCAL	1	RGPD3
TCGA.AA.3861.01A	2	108477208	108507151	9	2.2219	LARGE-GAIN	FOCAL	1	RGPD4
TCGA.AA.3862.01A	2	108477208	108507151	9	2.3766	LARGE-GAIN	FOCAL	1	RGPD4
TCGA.CK.5914.01A	2	108477208	108507151	9	1.3874	LARGE-GAIN	FOCAL	1	RGPD4
TCGA.A6.3808.01A	2	108604565	108998178	23	0.8064	LARGE-GAIN	FOCAL	4	"SLC5A7,SULT1C2,SULT1C3,SULT1C4"
TCGA.AZ.4684.01A	2	108608513	108875139	12	1.002	LARGE-GAIN	FOCAL	2	"SLC5A7,SULT1C3"
TCGA.AA.3861.01A	2	109085389	109384553	42	1.6481	LARGE-GAIN	FOCAL	3	"GCC2,LIMS1,RANBP2"
TCGA.AA.3862.01A	2	109085389	109384553	41	1.8375	LARGE-GAIN	FOCAL	3	"GCC2,LIMS1,RANBP2"
TCGA.AA.3509.01A	2	109086115	109088128	3	2.3238	LARGE-GAIN	FOCAL	1	GCC2
TCGA.AZ.4684.01A	2	109086115	109088128	3	2.4868	LARGE-GAIN	FOCAL	1	GCC2
TCGA.CK.5914.01A	2	109365377	109384553	10	1.3207	LARGE-GAIN	FOCAL	1	RANBP2
TCGA.AA.A010.01A	2	109513375	110301797	20	1.0479	LARGE-GAIN	FOCAL	3	"EDAR,SEPT10,SH3RF3"
TCGA.AA.A00N.01A	2	109513375	110332158	26	0.852	LARGE-GAIN	FOCAL	3	"EDAR,SEPT10,SH3RF3"
TCGA.A6.3808.01A	2	110917656	111414553	22	1.2888	LARGE-GAIN	FOCAL	6	"BUB1,LIMS3,LIMS3L,NPHP1,RGPD5,RGPD6"
TCGA.AA.A00Q.01A	2	111223132	111230125	3	0.7719	LARGE-GAIN	FOCAL	2	"LIMS3,LIMS3L"
TCGA.AA.3861.01A	2	112524467	112638143	35	2.345	LARGE-GAIN	FOCAL	1	ANAPC1
TCGA.AA.3862.01A	2	112524467	112638143	37	2.7019	LARGE-GAIN	FOCAL	1	ANAPC1
TCGA.AA.3861.01A	2	113057378	113300031	23	1.277	LARGE-GAIN	FOCAL	5	"POLR1B,RGPD5,RGPD8,TTL,ZC3H6"
TCGA.AA.3862.01A	2	113057378	113300031	23	1.5238	LARGE-GAIN	FOCAL	5	"POLR1B,RGPD5,RGPD8,TTL,ZC3H6"
TCGA.AA.A010.01A	2	113277812	113346388	21	0.8751	LARGE-GAIN	FOCAL	3	"CHCHD5,POLR1B,TTL"
TCGA.AA.A00N.01A	2	113332785	113343511	3	1.3511	LARGE-GAIN	FOCAL	2	"CHCHD5,POLR1B"
TCGA.AG.3909.01A	2	113332785	113346388	4	0.8457	LARGE-GAIN	FOCAL	2	"CHCHD5,POLR1B"
TCGA.AA.A00N.01A	2	113479049	113487142	12	1.0166	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	2	113590187	113832729	31	0.8304	LARGE-GAIN	FOCAL	7	"IL1B,IL1F10,IL36A,IL36B,IL36G,IL36RN,IL37"
TCGA.AA.A010.01A	2	114035859	114258335	11	0.9429	LARGE-GAIN	FOCAL	3	"CBWD2,FOXD4L1,PAX8"
TCGA.AA.3862.01A	2	114195405	114709036	44	0.948	LARGE-GAIN	FOCAL	5	"ACTR3,CBWD2,FOXD4L1,RABL2A,SLC35F5"
TCGA.EI.6508	2	115255343	115257240	3	1.3077	LARGE-GAIN	FOCAL	1	DPP10
TCGA.F5.6464	2	115255343	115257240	3	1.3377	LARGE-GAIN	FOCAL	1	DPP10
TCGA.AA.A00N.01A	2	118677878	118743508	20	0.7744	LARGE-GAIN	FOCAL	1	CCDC93
TCGA.CK.5914.01A	2	118677878	118753821	22	0.7377	LARGE-GAIN	FOCAL	1	CCDC93
TCGA.AA.A00N.01A	2	118771464	119749335	19	0.7661	LARGE-GAIN	FOCAL	4	"CCDC93,EN1,INSIG2,MARCO"
TCGA.CK.5914.01A	2	119699839	119749335	11	1.3828	LARGE-GAIN	FOCAL	1	MARCO
TCGA.AG.3909.01A	2	119699839	119915115	16	0.7044	LARGE-GAIN	FOCAL	2	"C1QL2,MARCO"
TCGA.CK.5914.01A	2	120194436	120251955	13	0.8534	LARGE-GAIN	FOCAL	2	"SCTR,TMEM37"
TCGA.AA.A00N.01A	2	120219376	120397306	18	0.767	LARGE-GAIN	FOCAL	2	"CFAP221,SCTR"
TCGA.AZ.4684.01A	2	120567414	120709501	16	0.8915	LARGE-GAIN	FOCAL	1	PTPN4
TCGA.DM.A28M.01A	2	120702610	120703912	2	1.6591	LARGE-GAIN	FOCAL	1	PTPN4
TCGA.AA.3534	2	121688691	121729969	27	0.894	LARGE-GAIN	FOCAL	1	GLI2
TCGA.AG.3906.01A	2	121740255	121746122	4	1.5875	LARGE-GAIN	FOCAL	1	GLI2
TCGA.AA.3867	2	121887776	121892887	3	1.723	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	2	121887776	121892887	3	1.9199	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	122139742	122260680	27	0.8972	LARGE-GAIN	FOCAL	1	CLASP1
TCGA.AA.3967.01A	2	122485268	122522660	12	0.6812	LARGE-GAIN	FOCAL	2	"NIFK,TSN"
TCGA.AA.A00N.01A	2	124979230	127453503	28	0.9894	LARGE-GAIN	FOCAL	2	"CNTNAP5,GYPC"
TCGA.CK.5914.01A	2	124979230	127453503	28	1.0148	LARGE-GAIN	FOCAL	2	"CNTNAP5,GYPC"
TCGA.AA.A010.01A	2	128014972	128051401	14	0.8655	LARGE-GAIN	FOCAL	1	ERCC3
TCGA.AA.A010.01A	2	128238573	128351074	33	0.7447	LARGE-GAIN	FOCAL	2	"IWS1,MYO7B"
TCGA.AA.A00N.01A	2	128283691	128335671	10	0.772	LARGE-GAIN	FOCAL	2	"IWS1,MYO7B"
TCGA.AG.3909.01A	2	128321681	128339428	9	0.8582	LARGE-GAIN	FOCAL	1	MYO7B
TCGA.AA.3930.01A	2	128382901	128384498	2	2.4748	LARGE-GAIN	FOCAL	1	MYO7B
TCGA.AG.3891.01A	2	128605624	128610449	3	0.8873	LARGE-GAIN	FOCAL	1	POLR2D
TCGA.AA.3861.01A	2	128945005	130953700	37	1.118	LARGE-GAIN	FOCAL	8	"CCDC74B,HS6ST1,MZT2B,POTEF,RAB6C,SMPD4,TUBA3E,UGGT1"
TCGA.AA.3862.01A	2	128945005	130955831	39	1.2134	LARGE-GAIN	FOCAL	8	"CCDC74B,HS6ST1,MZT2B,POTEF,RAB6C,SMPD4,TUBA3E,UGGT1"
TCGA.AG.A01W.01A	2	130589211	130627706	11	0.9154	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A014.01A	2	131130407	131130683	2	3.8707	LARGE-GAIN	FOCAL	1	PTPN18
TCGA.AA.3862.01A	2	131258088	131414095	7	2.4993	LARGE-GAIN	FOCAL	4	"CFC1,CFC1B,POTEI,POTEJ"
TCGA.AG.A01W.01A	2	131512860	131518316	6	1.2282	LARGE-GAIN	FOCAL	1	AMER3
TCGA.AG.A01W.01A	2	132003617	133143853	18	0.8281	LARGE-GAIN	FOCAL	8	"C2orf27A,C2orf27B,CCDC74A,MZT2A,POTEE,TUBA3D,WTH3DI,ZNF806"
TCGA.AA.3930.01A	2	132010443	132020944	2	1.8321	LARGE-GAIN	FOCAL	1	POTEE
TCGA.AA.3862.01A	2	132905656	132919145	5	2.716	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	133483158	135309564	40	0.8961	LARGE-GAIN	FOCAL	3	"MGAT5,NCKAP5,TMEM163"
TCGA.AG.3906.01A	2	136023065	136033159	4	1.1308	LARGE-GAIN	FOCAL	1	ZRANB3
TCGA.AA.A00N.01A	2	136373656	136418828	13	0.9475	LARGE-GAIN	FOCAL	1	R3HDM1
TCGA.AZ.4684.01A	2	136379016	136393453	4	1.6117	LARGE-GAIN	FOCAL	1	R3HDM1
TCGA.AA.A00N.01A	2	136545915	136605586	23	0.7027	LARGE-GAIN	FOCAL	2	"LCT,MCM6"
TCGA.AA.A010.01A	2	136547094	136594078	18	0.9912	LARGE-GAIN	FOCAL	1	LCT
TCGA.AA.A00N.01A	2	137639702	144525571	162	0.7342	LARGE-GAIN	FOCAL	7	"ARHGAP15,HNMT,KYNU,LRP1B,NXPH2,SPOPL,THSD7B"
TCGA.F5.6811.01A	2	140707188	140743265	6	0.8793	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	140990718	141200023	27	1.3034	LARGE-GAIN	FOCAL	1	LRP1B
TCGA.CK.5914.01A	2	141739680	141819573	11	1.2878	LARGE-GAIN	FOCAL	1	LRP1B
TCGA.AA.A00N.01A	2	144899399	150443518	108	0.6876	LARGE-GAIN	FOCAL	10	"ACVR2A,EPC2,GTDC1,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,ORC4,ZEB2"
TCGA.AG.A01W.01A	2	148426375	148932767	8	1.1243	LARGE-GAIN	FOCAL	3	"ACVR2A,MBD5,ORC4"
TCGA.CK.5914.01A	2	152317610	152525503	118	0.8801	LARGE-GAIN	FOCAL	2	"NEB,RIF1"
TCGA.AA.A00N.01A	2	152319431	152566119	135	0.9257	LARGE-GAIN	FOCAL	2	"NEB,RIF1"
TCGA.AA.A010.01A	2	152525503	152534032	6	0.8553	LARGE-GAIN	FOCAL	1	NEB
TCGA.DY.A1DC	2	154935903	154938171	3	1.4051	LARGE-GAIN	FOCAL	1	GALNT13
TCGA.AA.3509.01A	2	154996812	155711190	15	1.0503	LARGE-GAIN	FOCAL	3	"GALNT13,KCNJ3,LOC100144595"
TCGA.DY.A1DC	2	155206096	155241840	20	0.6865	LARGE-GAIN	FOCAL	1	GALNT13
TCGA.DY.A1DC	2	155314293	155322695	11	0.9614	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	157332569	159107287	72	0.8051	LARGE-GAIN	FOCAL	8	"ACVR1,ACVR1C,CCDC148,CYTIP,ERMN,GALNT5,GPD2,UPP2"
TCGA.AA.A010.01A	2	158406645	158485019	4	0.834	LARGE-GAIN	FOCAL	1	ACVR1C
TCGA.CK.5914.01A	2	159459498	160114217	51	0.7742	LARGE-GAIN	FOCAL	4	"DAPL1,PKP4,TANC1,WDSUB1"
TCGA.AA.A010.01A	2	160032856	160086042	15	1.0205	LARGE-GAIN	FOCAL	1	TANC1
TCGA.CK.5914.01A	2	160176769	160335038	34	0.698	LARGE-GAIN	FOCAL	1	BAZ2B
TCGA.AA.A00N.01A	2	160205471	160335038	25	0.9099	LARGE-GAIN	FOCAL	1	BAZ2B
TCGA.AG.A01W.01A	2	160323933	160336560	5	0.9197	LARGE-GAIN	FOCAL	1	BAZ2B
TCGA.AG.A01W.01A	2	160396391	160463424	26	0.7433	LARGE-GAIN	FOCAL	1	BAZ2B
TCGA.CK.5914.01A	2	160688134	162076167	91	0.7478	LARGE-GAIN	FOCAL	6	"ITGB6,LY75,LY75-CD302,PLA2R1,RBMS1,TANK"
TCGA.AA.A00N.01A	2	160806102	160862142	15	1.0928	LARGE-GAIN	FOCAL	1	PLA2R1
TCGA.AA.A00N.01A	2	160964152	161056458	14	0.9795	LARGE-GAIN	FOCAL	1	ITGB6
TCGA.CK.5914.01A	2	162223923	162251581	7	0.9841	LARGE-GAIN	FOCAL	1	PSMD14
TCGA.AA.A00N.01A	2	162279858	162851760	29	0.6847	LARGE-GAIN	FOCAL	3	"DPP4,SLC4A10,TBR1"
TCGA.DY.A1DC	2	163137180	163154362	5	1.0906	LARGE-GAIN	FOCAL	1	IFIH1
TCGA.DM.A282.01A	2	163213258	163216639	4	0.7069	LARGE-GAIN	FOCAL	1	GCA
TCGA.AA.A00N.01A	2	163228318	166786685	152	0.7363	LARGE-GAIN	FOCAL	10	"COBLL1,CSRNP3,FIGN,GALNT3,GRB14,KCNH7,SCN2A,SCN3A,SLC38A11,TTC21B"
TCGA.AA.A01C.01A	2	163229940	163393387	13	0.9886	LARGE-GAIN	FOCAL	1	KCNH7
TCGA.AA.A01C.01A	2	166847743	166868590	8	0.9678	LARGE-GAIN	FOCAL	1	SCN1A
TCGA.AA.A00N.01A	2	166868590	166900162	9	1.3022	LARGE-GAIN	FOCAL	1	SCN1A
TCGA.AA.A00N.01A	2	166901506	167136839	24	0.8973	LARGE-GAIN	FOCAL	2	"SCN1A,SCN9A"
TCGA.AA.A00N.01A	2	167138142	167167998	12	1.5711	LARGE-GAIN	FOCAL	1	SCN9A
TCGA.AA.A00N.01A	2	167284261	168101232	26	1.1005	LARGE-GAIN	FOCAL	2	"SCN7A,XIRP2"
TCGA.AA.3861.01A	2	168096318	168811966	12	1.7381	LARGE-GAIN	FOCAL	3	"B3GALT1,STK39,XIRP2"
TCGA.AG.A01W.01A	2	169509330	169544576	10	0.825	LARGE-GAIN	FOCAL	1	CERS6
TCGA.F5.6811.01A	2	169509351	169541296	9	0.7304	LARGE-GAIN	FOCAL	1	CERS6
TCGA.AA.A010.01A	2	169684879	169707577	5	0.9596	LARGE-GAIN	FOCAL	1	NOSTRIN
TCGA.AG.A01W.01A	2	169727182	169780962	29	0.7484	LARGE-GAIN	FOCAL	3	"ABCB11,G6PC2,SPC25"
TCGA.AA.A010.01A	2	169745691	169792691	13	0.72	LARGE-GAIN	FOCAL	3	"ABCB11,G6PC2,SPC25"
TCGA.AA.A01C.01A	2	169801105	169833050	9	1.0201	LARGE-GAIN	FOCAL	1	ABCB11
TCGA.AA.A00N.01A	2	170024997	170061957	20	1.3468	LARGE-GAIN	FOCAL	1	LRP2
TCGA.AA.A010.01A	2	170026161	170031662	6	0.9272	LARGE-GAIN	FOCAL	1	LRP2
TCGA.AA.A010.01A	2	170082893	170103188	12	0.7092	LARGE-GAIN	FOCAL	1	LRP2
TCGA.AA.A00N.01A	2	170088173	170103866	12	1.2366	LARGE-GAIN	FOCAL	1	LRP2
TCGA.AA.A00N.01A	2	170112569	170163739	16	0.6954	LARGE-GAIN	FOCAL	1	LRP2
TCGA.AG.A00C.01A	2	170605935	170678404	14	0.7391	LARGE-GAIN	FOCAL	4	"KLHL23,METTL5,PHOSPHO2-KLHL23,SSB"
TCGA.AA.A00N.01A	2	170733965	171509461	72	0.7656	LARGE-GAIN	FOCAL	2	"MYO3B,UBR3"
TCGA.AA.A00N.01A	2	171862982	171939230	17	0.84	LARGE-GAIN	FOCAL	1	TLK1
TCGA.AA.3509.01A	2	172549239	172586181	12	1.4564	LARGE-GAIN	FOCAL	1	DYNC1I2
TCGA.AZ.4684.01A	2	172549239	172586181	12	1.5055	LARGE-GAIN	FOCAL	1	DYNC1I2
TCGA.CK.5914.01A	2	173450959	173881035	22	0.7083	LARGE-GAIN	FOCAL	2	"PDK1,RAPGEF4"
TCGA.AA.A010.01A	2	173825813	173901300	22	0.7021	LARGE-GAIN	FOCAL	1	RAPGEF4
TCGA.AG.A01W.01A	2	174819639	174910051	4	1.123	LARGE-GAIN	FOCAL	1	SP3
TCGA.CK.5914.01A	2	175450175	175957752	30	0.7368	LARGE-GAIN	FOCAL	4	"ATF2,CHN1,CHRNA1,WIPF1"
TCGA.AG.A01W.01A	2	175684488	175694378	5	1.1603	LARGE-GAIN	FOCAL	1	CHN1
TCGA.AA.3509.01A	2	175686385	176829027	33	0.7415	LARGE-GAIN	FOCAL	4	"ATF2,ATP5G3,CHN1,KIAA1715"
TCGA.AZ.4684.01A	2	175710980	176829027	31	0.758	LARGE-GAIN	FOCAL	4	"ATF2,ATP5G3,CHN1,KIAA1715"
TCGA.CK.5914.01A	2	176046001	176844506	9	0.7066	LARGE-GAIN	FOCAL	2	"ATP5G3,KIAA1715"
TCGA.AG.3906.01A	2	176948027	176988635	9	1.6004	LARGE-GAIN	FOCAL	6	"EVX2,HOXD10,HOXD11,HOXD12,HOXD13,HOXD9"
TCGA.A6.3808.01A	2	177135046	178704937	54	0.8488	LARGE-GAIN	FOCAL	7	"AGPS,HNRNPA3,MTX2,NFE2L2,PDE11A,TTC30A,TTC30B"
TCGA.AA.3509.01A	2	177161525	177195263	8	2.1195	LARGE-GAIN	FOCAL	1	MTX2
TCGA.AZ.4684.01A	2	177161525	177195263	8	2.3432	LARGE-GAIN	FOCAL	1	MTX2
TCGA.CK.5914.01A	2	177161525	177465658	10	1.0074	LARGE-GAIN	FOCAL	1	MTX2
TCGA.DM.A28M.01A	2	177162519	177195263	7	1.983	LARGE-GAIN	FOCAL	1	MTX2
TCGA.AZ.4684.01A	2	178333092	178372630	4	1.6878	LARGE-GAIN	FOCAL	1	AGPS
TCGA.AG.3909.01A	2	178528539	178633975	10	0.6834	LARGE-GAIN	FOCAL	1	PDE11A
TCGA.AA.A00N.01A	2	179170872	179260131	23	0.8034	LARGE-GAIN	FOCAL	1	OSBPL6
TCGA.AG.A01W.01A	2	179202228	179213472	15	0.9713	LARGE-GAIN	FOCAL	1	OSBPL6
TCGA.DM.A28M.01A	2	179363918	179368460	4	1.5848	LARGE-GAIN	FOCAL	1	PLEKHA3
TCGA.AA.A02E.01A	2	179402086	179413617	12	0.9767	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A01C.01A	2	179402086	179480360	74	0.9443	LARGE-GAIN	FOCAL	1	TTN
TCGA.CK.5914.01A	2	179403287	179536689	124	1.1654	LARGE-GAIN	FOCAL	1	TTN
TCGA.AG.A00H.01A	2	179410103	179425956	18	0.8964	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A01I.01A	2	179410103	179489973	75	0.8132	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A02H.01A	2	179414278	179427390	15	0.929	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A01C.01A	2	179484351	179505216	21	1.0847	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A01I.01A	2	179494001	179495481	3	1.4231	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A02H.01A	2	179494001	179499845	10	1.2412	LARGE-GAIN	FOCAL	1	TTN
TCGA.AG.A01J.01A	2	179494001	179500642	12	1.2966	LARGE-GAIN	FOCAL	1	TTN
TCGA.AG.A00H.01A	2	179494921	179500178	10	1.0644	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A01I.01A	2	179498188	179501094	7	1.1884	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A02H.01A	2	179500178	179517209	18	0.7273	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.3939.01A	2	179500642	179502025	3	0.8252	LARGE-GAIN	FOCAL	1	TTN
TCGA.A6.3808.01A	2	179505216	179511173	6	2.1503	LARGE-GAIN	FOCAL	1	TTN
TCGA.AZ.4684.01A	2	179505905	179509213	3	1.676	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A01C.01A	2	179506934	179517209	9	0.714	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A00N.01A	2	179527637	179572221	54	0.9246	LARGE-GAIN	FOCAL	1	TTN
TCGA.AZ.4684.01A	2	179530049	179561774	38	1.3535	LARGE-GAIN	FOCAL	1	TTN
TCGA.A6.3808.01A	2	179530049	179566184	41	1.4446	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.3509.01A	2	179535759	179560560	32	1.3352	LARGE-GAIN	FOCAL	1	TTN
TCGA.CK.5914.01A	2	179538321	179544308	10	0.7099	LARGE-GAIN	FOCAL	1	TTN
TCGA.DM.A28M.01A	2	179546336	179549344	6	1.5962	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A010.01A	2	179547374	179569552	27	0.7347	LARGE-GAIN	FOCAL	1	TTN
TCGA.AG.A008.01A	2	179560560	179563508	3	0.6818	LARGE-GAIN	FOCAL	1	TTN
TCGA.AA.A01C.01A	2	179574256	179590084	23	0.9322	LARGE-GAIN	FOCAL	1	TTN
TCGA.CK.5914.01A	2	179575325	180857969	154	0.7018	LARGE-GAIN	FOCAL	5	"CCDC141,CWC22,SESTD1,TTN,ZNF385B"
TCGA.AA.A00N.01A	2	179596462	180857969	123	1.0227	LARGE-GAIN	FOCAL	5	"CCDC141,CWC22,SESTD1,TTN,ZNF385B"
TCGA.AA.A01C.01A	2	179605018	179629222	11	0.7871	LARGE-GAIN	FOCAL	1	TTN
TCGA.AG.3906.01A	2	181846739	181848695	2	0.7792	LARGE-GAIN	FOCAL	1	UBE2E3
TCGA.CK.5914.01A	2	181922368	182340476	7	0.8379	LARGE-GAIN	FOCAL	2	"ITGA4,UBE2E3"
TCGA.AA.A010.01A	2	181922368	182343451	8	0.8861	LARGE-GAIN	FOCAL	2	"ITGA4,UBE2E3"
TCGA.CK.5914.01A	2	182343451	182521505	35	0.9675	LARGE-GAIN	FOCAL	2	"CERKL,ITGA4"
TCGA.AA.A00N.01A	2	182388850	182413225	14	1.3154	LARGE-GAIN	FOCAL	2	"CERKL,ITGA4"
TCGA.AG.A00Y.01A	2	182395204	182396337	2	3.736	LARGE-GAIN	FOCAL	1	ITGA4
TCGA.AG.3583	2	182511855	182515794	3	1.6421	LARGE-GAIN	FOCAL	1	CERKL
TCGA.AA.A010.01A	2	182521505	182543090	3	0.7999	LARGE-GAIN	FOCAL	2	"CERKL,NEUROD1"
TCGA.CK.5914.01A	2	182926086	183386965	18	0.702	LARGE-GAIN	FOCAL	2	"PDE1A,PPP1R1C"
TCGA.DY.A1DC	2	186614061	186627240	6	1.3049	LARGE-GAIN	FOCAL	1	FSIP2
TCGA.DM.A1D9	2	186620788	186672896	16	0.7101	LARGE-GAIN	FOCAL	1	FSIP2
TCGA.DM.A28M.01A	2	186669903	186672272	3	2.3066	LARGE-GAIN	FOCAL	1	FSIP2
TCGA.CK.5914.01A	2	186669903	186697780	9	1.091	LARGE-GAIN	FOCAL	1	FSIP2
TCGA.DM.A28M.01A	2	187703709	187712394	3	1.5917	LARGE-GAIN	FOCAL	1	ZSWIM2
TCGA.CK.5914.01A	2	188250197	189405860	15	0.7718	LARGE-GAIN	FOCAL	3	"CALCRL,GULP1,TFPI"
TCGA.DM.A28M.01A	2	188348799	189342343	7	1.3362	LARGE-GAIN	FOCAL	2	"GULP1,TFPI"
TCGA.AG.A01W.01A	2	189609550	189622287	9	1.204	LARGE-GAIN	FOCAL	1	DIRC1
TCGA.AG.A01W.01A	2	189623490	189633637	12	0.7729	LARGE-GAIN	FOCAL	1	DIRC1
TCGA.CK.5914.01A	2	189849847	189949836	79	0.8471	LARGE-GAIN	FOCAL	2	"COL3A1,COL5A2"
TCGA.AA.A00N.01A	2	189858070	190339907	99	1.0425	LARGE-GAIN	FOCAL	3	"COL3A1,COL5A2,WDR75"
TCGA.CK.5914.01A	2	190306172	190339400	21	0.6835	LARGE-GAIN	FOCAL	1	WDR75
TCGA.CK.5914.01A	2	191069791	191161518	14	0.8453	LARGE-GAIN	FOCAL	1	HIBCH
TCGA.AA.A00N.01A	2	191334467	191375069	7	0.7167	LARGE-GAIN	FOCAL	2	"MFSD6,TMEM194B"
TCGA.CK.5914.01A	2	191789227	191862892	26	0.7318	LARGE-GAIN	FOCAL	2	"GLS,STAT1"
TCGA.AA.A00N.01A	2	192700717	192922357	8	0.9584	LARGE-GAIN	FOCAL	2	"SDPR,TMEFF2"
TCGA.DY.A1DC	2	193191091	193241774	20	0.926	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	2	195857382	195884250	17	1.1666	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	2	196548435	197757817	176	0.7205	LARGE-GAIN	FOCAL	8	"C2orf66,CCDC150,DNAH7,GTF3C3,HECW2,PGAP1,SLC39A10,STK17B"
TCGA.CK.5914.01A	2	198260768	198281453	15	0.8177	LARGE-GAIN	FOCAL	1	SF3B1
TCGA.AZ.4684.01A	2	198621105	198646409	8	1.1985	LARGE-GAIN	FOCAL	1	BOLL
TCGA.CK.5914.01A	2	198650616	200776170	18	1.0356	LARGE-GAIN	FOCAL	4	"BOLL,C2orf69,PLCL1,SATB2"
TCGA.AA.A00N.01A	2	198948432	200246368	14	1.0629	LARGE-GAIN	FOCAL	2	"PLCL1,SATB2"
TCGA.DM.A28F	2	199537085	199795577	87	0.7013	LARGE-GAIN	FOCAL	0	None
TCGA.EI.6508	2	199558178	199561759	5	1.3161	LARGE-GAIN	FOCAL	0	None
TCGA.EI.6508	2	199683175	199710562	12	0.9256	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	2	201194079	201354842	16	0.707	LARGE-GAIN	FOCAL	2	"KCTD18,SPATS2L"
TCGA.AG.A01W.01A	2	201214009	201229762	4	0.9341	LARGE-GAIN	FOCAL	1	SPATS2L
TCGA.DM.A28M.01A	2	201399667	201440007	7	0.8875	LARGE-GAIN	FOCAL	1	SGOL2
TCGA.AA.3509.01A	2	201434339	201438203	3	2.5998	LARGE-GAIN	FOCAL	1	SGOL2
TCGA.AZ.4684.01A	2	201434339	201438203	3	2.6811	LARGE-GAIN	FOCAL	1	SGOL2
TCGA.AA.A00N.01A	2	201477280	201527529	18	0.7317	LARGE-GAIN	FOCAL	1	AOX1
TCGA.AA.A01C.01A	2	201502885	201515649	4	0.8629	LARGE-GAIN	FOCAL	1	AOX1
TCGA.AG.A01W.01A	2	201857768	201915268	11	0.7489	LARGE-GAIN	FOCAL	1	FAM126B
TCGA.AG.3906.01A	2	201994540	202014430	7	1.1423	LARGE-GAIN	FOCAL	1	CFLAR
TCGA.AA.A00N.01A	2	202195419	202272089	21	0.7844	LARGE-GAIN	FOCAL	2	"ALS2CR12,TRAK2"
TCGA.AG.3906.01A	2	202430445	202439941	4	0.6825	LARGE-GAIN	FOCAL	1	ALS2CR11
TCGA.AA.A00N.01A	2	202534407	202611242	37	0.7826	LARGE-GAIN	FOCAL	2	"ALS2,MPP4"
TCGA.CK.5914.01A	2	202545509	202593727	30	0.9844	LARGE-GAIN	FOCAL	2	"ALS2,MPP4"
TCGA.AA.A00N.01A	2	202672250	202755461	12	0.8022	LARGE-GAIN	FOCAL	1	CDK15
TCGA.CK.5914.01A	2	202938304	202962107	5	1.4886	LARGE-GAIN	FOCAL	1	KIAA2012
TCGA.AA.A00N.01A	2	202938304	202978015	11	1.2279	LARGE-GAIN	FOCAL	1	KIAA2012
TCGA.CK.5914.01A	2	202964295	202979626	8	0.7094	LARGE-GAIN	FOCAL	1	KIAA2012
TCGA.AG.3906.01A	2	203379570	203420464	9	0.8272	LARGE-GAIN	FOCAL	1	BMPR2
TCGA.AA.A00N.01A	2	203964317	204037414	28	0.7081	LARGE-GAIN	FOCAL	1	NBEAL1
TCGA.AA.A00N.01A	2	204259371	206927473	86	0.8153	LARGE-GAIN	FOCAL	8	"ABI2,CD28,CTLA4,ICOS,INO80D,NRP2,PARD3B,RAPH1"
TCGA.AA.3529	2	206367998	206412486	8	0.7411	LARGE-GAIN	FOCAL	1	PARD3B
TCGA.AA.3529	2	206434615	206440640	4	0.8178	LARGE-GAIN	FOCAL	1	PARD3B
TCGA.AA.A010.01A	2	206592586	206659457	12	1.0038	LARGE-GAIN	FOCAL	1	NRP2
TCGA.AA.A00N.01A	2	207161953	208442202	90	0.7604	LARGE-GAIN	FOCAL	9	"ADAM23,CPO,CREB1,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,ZDBF2"
TCGA.A6.3808.01A	2	207407920	207953162	67	0.7957	LARGE-GAIN	FOCAL	7	"ADAM23,CPO,DYTN,FASTKD2,KLF7,LOC200726,MDH1B"
TCGA.CK.5914.01A	2	207655293	207988895	15	1.0536	LARGE-GAIN	FOCAL	3	"CPO,FASTKD2,KLF7"
TCGA.AA.3930.01A	2	208598623	208605318	3	0.8329	LARGE-GAIN	FOCAL	1	CCNYL1
TCGA.AA.A010.01A	2	208631667	209142214	38	0.6955	LARGE-GAIN	FOCAL	9	"C2orf80,CRYGA,CRYGB,CRYGC,CRYGD,FZD5,IDH1,PIKFYVE,PLEKHM3"
TCGA.AA.A00N.01A	2	209271745	210636744	31	0.824	LARGE-GAIN	FOCAL	3	"MAP2,PTH2R,UNC80"
TCGA.AG.3883	2	209318457	209330030	3	0.9368	LARGE-GAIN	FOCAL	1	PTH2R
TCGA.DM.A28A	2	209599807	209787009	46	1.0396	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	2	210650750	210843211	54	0.8954	LARGE-GAIN	FOCAL	1	UNC80
TCGA.CK.5914.01A	2	210696130	210846861	44	0.903	LARGE-GAIN	FOCAL	1	UNC80
TCGA.AA.A010.01A	2	210860023	210896104	14	0.7627	LARGE-GAIN	FOCAL	3	"KANSL1L,RPE,UNC80"
TCGA.G4.6317	2	210953066	211002098	5	0.7409	LARGE-GAIN	FOCAL	1	KANSL1L
TCGA.AA.A00N.01A	2	211300902	211447289	14	0.8901	LARGE-GAIN	FOCAL	2	"CPS1,LANCL1"
TCGA.CK.5914.01A	2	211447289	211476800	15	1.2342	LARGE-GAIN	FOCAL	1	CPS1
TCGA.AA.A01C.01A	2	211447289	211481118	16	0.9548	LARGE-GAIN	FOCAL	1	CPS1
TCGA.AA.A00N.01A	2	211521232	213921568	43	0.722	LARGE-GAIN	FOCAL	3	"CPS1,ERBB4,IKZF2"
TCGA.DY.A1DC	2	211977705	211989726	13	0.8947	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	2	213164791	213181314	9	1.3009	LARGE-GAIN	FOCAL	1	ERBB4
TCGA.DM.A1HB	2	213870874	213871708	4	1.1005	LARGE-GAIN	FOCAL	1	IKZF2
TCGA.DY.A1DC	2	213987829	214011939	6	0.9088	LARGE-GAIN	FOCAL	1	IKZF2
TCGA.AG.3906.01A	2	214012400	214013243	2	1.1426	LARGE-GAIN	FOCAL	1	IKZF2
TCGA.AA.A00N.01A	2	214149158	215976270	80	0.792	LARGE-GAIN	FOCAL	4	"ABCA12,BARD1,SPAG16,VWC2L"
TCGA.AG.A01W.01A	2	215531218	215553436	11	0.7428	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	2	215872411	215901629	11	0.9025	LARGE-GAIN	FOCAL	1	ABCA12
TCGA.AA.3811	2	215914904	215917527	2	1.4453	LARGE-GAIN	FOCAL	1	ABCA12
TCGA.AA.A00N.01A	2	216203453	216279490	38	0.7584	LARGE-GAIN	FOCAL	2	"ATIC,FN1"
TCGA.AA.A00N.01A	2	216996988	217341780	30	0.8136	LARGE-GAIN	FOCAL	3	"MARCH4,SMARCAL1,XRCC5"
TCGA.AG.A014.01A	2	217724304	217724587	2	2.9754	LARGE-GAIN	FOCAL	1	TNP1
TCGA.AG.3909.01A	2	218745604	219028905	22	0.9988	LARGE-GAIN	FOCAL	4	"CXCR1,CXCR2,RUFY4,TNS1"
TCGA.AA.A00N.01A	2	218938048	219082130	13	1.1908	LARGE-GAIN	FOCAL	4	"ARPC2,CXCR1,CXCR2,RUFY4"
TCGA.CK.5914.01A	2	218939796	218954627	5	1.912	LARGE-GAIN	FOCAL	1	RUFY4
TCGA.CK.5914.01A	2	218999483	219082130	6	0.9244	LARGE-GAIN	FOCAL	3	"ARPC2,CXCR1,CXCR2"
TCGA.CK.5914.01A	2	219110091	219118545	4	0.8208	LARGE-GAIN	FOCAL	1	ARPC2
TCGA.AG.3906.01A	2	219204459	219222210	7	1.2634	LARGE-GAIN	FOCAL	2	"CATIP,PNKD"
TCGA.AA.3815.01A	2	219225253	219227410	2	1.9645	LARGE-GAIN	FOCAL	1	CATIP
TCGA.AG.A01W.01A	2	219252086	219253520	4	0.9677	LARGE-GAIN	FOCAL	1	SLC11A1
TCGA.AA.A024.01A	2	219267708	219268973	2	3.7491	LARGE-GAIN	FOCAL	1	CTDSP1
TCGA.AA.3867	2	219271803	219282428	3	1.3108	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3930.01A	2	219288452	219292676	4	0.9494	LARGE-GAIN	FOCAL	1	VIL1
TCGA.AA.A00N.01A	2	219288452	219303328	15	0.8707	LARGE-GAIN	FOCAL	1	VIL1
TCGA.AG.3909.01A	2	219288452	219303328	15	1.0707	LARGE-GAIN	FOCAL	1	VIL1
TCGA.CK.5914.01A	2	219288452	219327983	22	0.8163	LARGE-GAIN	FOCAL	2	"USP37,VIL1"
TCGA.CK.5914.01A	2	219457288	219495331	9	1.1647	LARGE-GAIN	FOCAL	2	"PLCD4,RQCD1"
TCGA.AG.3909.01A	2	219458779	219508960	18	0.785	LARGE-GAIN	FOCAL	3	"PLCD4,RQCD1,ZNF142"
TCGA.AA.A010.01A	2	219487353	219537495	32	0.9565	LARGE-GAIN	FOCAL	5	"BCS1L,PLCD4,RNF25,STK36,ZNF142"
TCGA.CK.5914.01A	2	219536593	219688895	53	0.883	LARGE-GAIN	FOCAL	5	"CYP27A1,PRKAG3,RNF25,STK36,TTLL4"
TCGA.AA.A02H.01A	2	219540034	219549766	7	0.8323	LARGE-GAIN	FOCAL	1	STK36
TCGA.AG.3909.01A	2	219602361	219696376	36	0.799	LARGE-GAIN	FOCAL	3	"CYP27A1,PRKAG3,TTLL4"
TCGA.AA.A00N.01A	2	219602361	219724713	37	0.7141	LARGE-GAIN	FOCAL	4	"CYP27A1,PRKAG3,TTLL4,WNT6"
TCGA.AG.A01W.01A	2	219819596	219853493	10	0.876	LARGE-GAIN	FOCAL	2	"CDK5R2,FEV"
TCGA.AG.A01W.01A	2	219867016	219880685	14	0.8309	LARGE-GAIN	FOCAL	1	CCDC108
TCGA.AG.A01W.01A	2	219954255	220024064	18	0.7752	LARGE-GAIN	FOCAL	1	NHEJ1
TCGA.AA.3967.01A	2	220078506	220104862	35	0.7257	LARGE-GAIN	FOCAL	4	"ABCB6,ANKZF1,ATG9A,GLB1L"
TCGA.AG.3906.01A	2	220091527	220096955	5	1.4454	LARGE-GAIN	FOCAL	2	"ANKZF1,ATG9A"
TCGA.AG.A01W.01A	2	220112303	220117643	5	1.1955	LARGE-GAIN	FOCAL	2	"STK16,TUBA4A"
TCGA.AG.A01L.01A	2	220162570	220166907	8	0.9626	LARGE-GAIN	FOCAL	1	PTPRN
TCGA.AG.3906.01A	2	220493100	220506315	18	0.8557	LARGE-GAIN	FOCAL	1	SLC4A3
TCGA.DM.A1HB	2	221898973	221925632	8	1.0576	LARGE-GAIN	FOCAL	0	None
TCGA.D5.5538	2	222738065	222739375	3	1.3108	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	2	224743321	224765870	8	0.845	LARGE-GAIN	FOCAL	1	WDFY1
TCGA.A6.6648	2	227348072	227351769	3	1.2333	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	227367983	227371319	4	1.3303	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	2	227771391	227963363	35	1.207	LARGE-GAIN	FOCAL	2	"COL4A4,RHBDD1"
TCGA.AG.3909.01A	2	227906816	227924083	10	0.9069	LARGE-GAIN	FOCAL	1	COL4A4
TCGA.CK.5914.01A	2	227906816	227963363	19	1.228	LARGE-GAIN	FOCAL	1	COL4A4
TCGA.AA.A00N.01A	2	228128449	228145590	11	1.105	LARGE-GAIN	FOCAL	1	COL4A3
TCGA.CK.5914.01A	2	228204966	230456244	86	0.7318	LARGE-GAIN	FOCAL	10	"AGFG1,C2orf83,CCL20,DAW1,DNER,MFF,PID1,SLC19A3,SPHKAP,TM4SF20"
TCGA.AF.5654	2	228561252	229430920	285	0.8985	LARGE-GAIN	FOCAL	4	"CCL20,DAW1,SLC19A3,SPHKAP"
TCGA.AA.A00N.01A	2	228758473	230456244	40	0.9915	LARGE-GAIN	FOCAL	4	"DAW1,DNER,PID1,SPHKAP"
TCGA.AA.A00N.01A	2	230650426	230679764	21	0.9539	LARGE-GAIN	FOCAL	1	TRIP12
TCGA.AA.A00N.01A	2	231036762	231135251	32	0.787	LARGE-GAIN	FOCAL	2	"SP110,SP140"
TCGA.CK.5914.01A	2	231036762	231158909	38	0.9564	LARGE-GAIN	FOCAL	2	"SP110,SP140"
TCGA.AA.A010.01A	2	231158909	231236238	14	0.7252	LARGE-GAIN	FOCAL	2	"SP140,SP140L"
TCGA.AA.A00N.01A	2	231191903	231236238	7	0.7515	LARGE-GAIN	FOCAL	1	SP140L
TCGA.CK.5914.01A	2	231222473	231256761	10	0.7538	LARGE-GAIN	FOCAL	1	SP140L
TCGA.CK.5914.01A	2	231314851	231624670	25	0.835	LARGE-GAIN	FOCAL	2	"CAB39,SP100"
TCGA.AG.3909.01A	2	231359052	231379844	8	0.7726	LARGE-GAIN	FOCAL	1	SP100
TCGA.AA.A00N.01A	2	231973244	232010902	5	0.9798	LARGE-GAIN	FOCAL	2	"HTR2B,PSMD1"
TCGA.CK.5914.01A	2	232597614	232645703	5	0.713	LARGE-GAIN	FOCAL	1	PDE6D
TCGA.AA.A010.01A	2	232645703	232790818	14	1.0129	LARGE-GAIN	FOCAL	3	"COPS7B,NPPC,PDE6D"
TCGA.CK.5914.01A	2	232672155	233164723	19	0.7087	LARGE-GAIN	FOCAL	3	"COPS7B,DIS3L2,NPPC"
TCGA.AG.A01W.01A	2	232903601	233057701	29	0.777	LARGE-GAIN	FOCAL	1	DIS3L2
TCGA.AA.A02E.01A	2	233409058	233410216	3	3.1855	LARGE-GAIN	FOCAL	1	CHRNG
TCGA.AM.5820	2	233734082	233767036	19	0.8	LARGE-GAIN	FOCAL	2	"C2orf82,NGEF"
TCGA.AA.A010.01A	2	233834913	234164694	31	0.7783	LARGE-GAIN	FOCAL	4	"ATG16L1,INPP5D,NEU2,NGEF"
TCGA.AA.A00Q.01A	2	233990403	234072925	3	0.9683	LARGE-GAIN	FOCAL	1	INPP5D
TCGA.AG.3909.01A	2	234198463	234247262	16	1.0446	LARGE-GAIN	FOCAL	2	"ATG16L1,SAG"
TCGA.CK.5914.01A	2	234397993	234449259	18	0.8718	LARGE-GAIN	FOCAL	1	USP40
TCGA.AA.A00N.01A	2	234420303	234601602	26	0.7492	LARGE-GAIN	FOCAL	6	"UGT1A10,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.CK.5914.01A	2	234545130	234590532	6	1.8415	LARGE-GAIN	FOCAL	3	"UGT1A10,UGT1A8,UGT1A9"
TCGA.AA.A00N.01A	2	234688286	234740005	35	0.7472	LARGE-GAIN	FOCAL	1	MROH2A
TCGA.AY.5543	2	236872104	236879376	3	1.3382	LARGE-GAIN	FOCAL	1	AGAP1
TCGA.AA.A00Q.01A	2	237076443	237239965	3	0.7306	LARGE-GAIN	FOCAL	3	"ASB18,GBX2,IQCA1"
TCGA.AA.A010.01A	2	238258720	238296196	23	0.9836	LARGE-GAIN	FOCAL	1	COL6A3
TCGA.AA.A010.01A	2	238640916	238666049	10	0.8991	LARGE-GAIN	FOCAL	1	LRRFIP1
TCGA.AA.3556	2	238667047	238668801	3	1.391	LARGE-GAIN	FOCAL	1	LRRFIP1
TCGA.AH.6544	2	238670791	238675891	3	1.8002	LARGE-GAIN	FOCAL	1	LRRFIP1
TCGA.CK.5914.01A	2	238722190	238742603	12	1.0631	LARGE-GAIN	FOCAL	1	RBM44
TCGA.AA.3509.01A	2	238725669	238742603	10	1.4642	LARGE-GAIN	FOCAL	1	RBM44
TCGA.AZ.4684.01A	2	238725669	238742603	10	1.5746	LARGE-GAIN	FOCAL	1	RBM44
TCGA.AF.3914.01A	2	238990301	238991584	3	1.3332	LARGE-GAIN	FOCAL	1	SCLY
TCGA.AG.A00C.01A	2	239093790	239140935	7	0.7255	LARGE-GAIN	FOCAL	1	ILKAP
TCGA.AM.5820	2	242138064	242167487	9	0.9134	LARGE-GAIN	FOCAL	2	"ANO7,HDLBP"
TCGA.AG.3906.01A	2	242644024	242664346	5	1.5629	LARGE-GAIN	FOCAL	1	ING5
TCGA.DM.A1DA	2	243001372	243048759	5	0.7206	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	3	367590	3072492	57	0.6838	LARGE-GAIN	FOCAL	3	"CHL1,CNTN4,CNTN6"
TCGA.AA.3509.01A	3	367590	3076264	58	1.0052	LARGE-GAIN	FOCAL	3	"CHL1,CNTN4,CNTN6"
TCGA.AA.A00N.01A	3	382428	440653	21	1.0002	LARGE-GAIN	FOCAL	1	CHL1
TCGA.DY.A1DC	3	1358533	1374975	20	1.0038	LARGE-GAIN	FOCAL	1	CNTN6
TCGA.CK.5914.01A	3	1363304	1393991	5	0.7362	LARGE-GAIN	FOCAL	1	CNTN6
TCGA.DM.A1HB	3	1486383	1496820	11	0.7813	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	1866963	1895809	18	0.7673	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3972	3	3262362	3295714	25	1.3396	LARGE-GAIN	FOCAL	0	None
TCGA.EI.6508	3	4394766	4415275	17	0.7002	LARGE-GAIN	FOCAL	1	SUMF1
TCGA.AA.A00N.01A	3	4403776	4859729	62	0.837	LARGE-GAIN	FOCAL	2	"ITPR1,SUMF1"
TCGA.AA.3518	3	4877198	4904396	15	0.7788	LARGE-GAIN	FOCAL	1	ITPR1
TCGA.AA.3693	3	5078285	5115388	16	0.8632	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	3	5115252	5136563	15	0.99	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	3	5193134	5256168	11	0.8061	LARGE-GAIN	FOCAL	2	"ARL8B,EDEM1"
TCGA.EI.6510	3	6319262	6331852	11	0.9564	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	3	7188088	9408574	66	0.6925	LARGE-GAIN	FOCAL	8	"CAV3,GRM7,LMCD1,OXTR,RAD18,SRGAP3,SSUH2,THUMPD3"
TCGA.AA.A010.01A	3	8590337	8675304	12	1.3169	LARGE-GAIN	FOCAL	2	"LMCD1,SSUH2"
TCGA.AA.A00N.01A	3	9470561	9547603	26	0.8463	LARGE-GAIN	FOCAL	2	"LHFPL4,SETD5"
TCGA.AA.A00Q.01A	3	9593911	9767584	6	0.9486	LARGE-GAIN	FOCAL	3	"CPNE9,LHFPL4,MTMR14"
TCGA.AG.A01W.01A	3	9957493	9965814	8	0.9979	LARGE-GAIN	FOCAL	2	"IL17RC,IL17RE"
TCGA.AG.A016.01A	3	9982557	9990813	8	0.8759	LARGE-GAIN	FOCAL	2	"CRELD1,PRRT3"
TCGA.AG.A015.01A	3	9984468	9990813	7	0.7406	LARGE-GAIN	FOCAL	2	"CRELD1,PRRT3"
TCGA.AG.A01L.01A	3	9984468	9990813	7	0.967	LARGE-GAIN	FOCAL	2	"CRELD1,PRRT3"
TCGA.AA.A010.01A	3	10028172	10076088	6	0.71	LARGE-GAIN	FOCAL	3	"EMC3,FANCD2,LOC401052"
TCGA.A6.3808.01A	3	10311764	10347192	13	0.7106	LARGE-GAIN	FOCAL	3	"GHRL,SEC13,TATDN2"
TCGA.AG.3909.01A	3	10391743	10452250	14	0.6993	LARGE-GAIN	FOCAL	1	ATP2B2
TCGA.AA.3972	3	11979817	11999794	7	0.9481	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	3	12224764	12475350	11	0.7106	LARGE-GAIN	FOCAL	2	"PPARG,SYN2"
TCGA.AA.A00N.01A	3	12623567	12785344	23	0.6942	LARGE-GAIN	FOCAL	3	"MKRN2,RAF1,TMEM40"
TCGA.AG.3909.01A	3	12776196	12844950	11	0.8542	LARGE-GAIN	FOCAL	2	"CAND2,TMEM40"
TCGA.AA.3972	3	12943607	13107740	53	1.2887	LARGE-GAIN	FOCAL	1	IQSEC1
TCGA.AA.3972	3	13107881	13185187	54	1.5508	LARGE-GAIN	FOCAL	1	IQSEC1
TCGA.AM.5820	3	13110475	13110969	3	2.0961	LARGE-GAIN	FOCAL	1	IQSEC1
TCGA.AA.3972	3	13189135	14661875	587	1.2016	LARGE-GAIN	FOCAL	10	"CHCHD4,FBLN2,GRIP2,HDAC11,LSM3,NUP210,SLC6A6,TMEM43,WNT7A,XPC"
TCGA.AA.A00N.01A	3	13359132	13418906	29	0.7742	LARGE-GAIN	FOCAL	1	NUP210
TCGA.AA.A010.01A	3	13376922	13418906	18	0.6924	LARGE-GAIN	FOCAL	1	NUP210
TCGA.AA.A010.01A	3	14219969	14801346	63	0.727	LARGE-GAIN	FOCAL	6	"C3orf20,CCDC174,GRIP2,LSM3,SLC6A6,XPC"
TCGA.AG.A01W.01A	3	14522086	14530131	7	0.7522	LARGE-GAIN	FOCAL	1	SLC6A6
TCGA.AA.A00N.01A	3	14711404	14798826	13	1.2264	LARGE-GAIN	FOCAL	2	"C3orf20,CCDC174"
TCGA.AA.A00N.01A	3	14938985	14967538	14	1.179	LARGE-GAIN	FOCAL	1	FGD5
TCGA.AA.A00N.01A	3	15643293	15749389	17	0.8022	LARGE-GAIN	FOCAL	3	"ANKRD28,BTD,HACL1"
TCGA.AA.A010.01A	3	16216609	16242075	3	1.0709	LARGE-GAIN	FOCAL	1	GALNT15
TCGA.AA.A00N.01A	3	16216609	16535221	29	0.9112	LARGE-GAIN	FOCAL	4	"DPH3,GALNT15,OXNAD1,RFTN1"
TCGA.AA.A010.01A	3	16302212	16312413	4	0.9851	LARGE-GAIN	FOCAL	2	"DPH3,OXNAD1"
TCGA.AA.A010.01A	3	16358285	16475336	8	0.7661	LARGE-GAIN	FOCAL	1	RFTN1
TCGA.AA.A00D.01A	3	16633510	16639907	4	0.8928	LARGE-GAIN	FOCAL	1	DAZL
TCGA.AA.A00Q.01A	3	16633510	16646621	4	1.0071	LARGE-GAIN	FOCAL	1	DAZL
TCGA.AA.A00N.01A	3	16646621	18438641	32	0.7883	LARGE-GAIN	FOCAL	5	"DAZL,LOC339862,PLCL2,SATB1,TBC1D5"
TCGA.AA.3509.01A	3	17275123	19559432	37	1.1958	LARGE-GAIN	FOCAL	4	"KCNH8,LOC339862,SATB1,TBC1D5"
TCGA.AZ.4684.01A	3	17275123	19574859	38	0.8093	LARGE-GAIN	FOCAL	4	"KCNH8,LOC339862,SATB1,TBC1D5"
TCGA.AA.3972	3	18199256	19441125	291	0.8174	LARGE-GAIN	FOCAL	3	"KCNH8,LOC339862,SATB1"
TCGA.AA.3972	3	20025422	20292977	96	1.1362	LARGE-GAIN	FOCAL	4	"KAT2B,PP2D1,RAB5A,SGOL1"
TCGA.AA.3972	3	20299301	20855367	193	0.827	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3972	3	20856538	20997612	35	1.1148	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3972	3	21026363	21194640	61	1.0435	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3972	3	21197842	22412265	639	0.7089	LARGE-GAIN	FOCAL	1	ZNF385D
TCGA.AZ.6608	3	21777158	21839870	71	0.831	LARGE-GAIN	FOCAL	1	ZNF385D
TCGA.AA.3509.01A	3	25611200	25773782	40	1.2995	LARGE-GAIN	FOCAL	3	"NGLY1,RARB,TOP2B"
TCGA.AZ.4684.01A	3	25635991	25773782	37	0.9342	LARGE-GAIN	FOCAL	3	"NGLY1,RARB,TOP2B"
TCGA.AA.A00N.01A	3	26751155	27493852	56	0.8406	LARGE-GAIN	FOCAL	3	"LRRC3B,NEK10,SLC4A7"
TCGA.CM.5860	3	27118446	27125596	16	0.6893	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	3	28283196	31677417	70	1.09	LARGE-GAIN	FOCAL	7	"AZI2,CMC1,GADL1,RBMS3,STT3B,TGFBR2,ZCWPW2"
TCGA.AZ.4684.01A	3	28283196	31677417	70	0.7118	LARGE-GAIN	FOCAL	7	"AZI2,CMC1,GADL1,RBMS3,STT3B,TGFBR2,ZCWPW2"
TCGA.AA.A00N.01A	3	28454589	31871510	70	0.9639	LARGE-GAIN	FOCAL	6	"GADL1,OSBPL10,RBMS3,STT3B,TGFBR2,ZCWPW2"
TCGA.F5.6811.01A	3	29900594	29960644	5	0.8896	LARGE-GAIN	FOCAL	1	RBMS3
TCGA.DM.A28M.01A	3	31656548	31658373	2	2.208	LARGE-GAIN	FOCAL	1	STT3B
TCGA.CK.5914.01A	3	33087585	33113994	8	0.6998	LARGE-GAIN	FOCAL	1	GLB1
TCGA.AA.3509.01A	3	33614550	36547234	68	0.8107	LARGE-GAIN	FOCAL	4	"ARPP21,CLASP2,PDCD6IP,STAC"
TCGA.AA.3861.01A	3	33877518	35730739	16	1.5285	LARGE-GAIN	FOCAL	2	"ARPP21,PDCD6IP"
TCGA.AA.3862.01A	3	33877518	35730739	16	1.5221	LARGE-GAIN	FOCAL	2	"ARPP21,PDCD6IP"
TCGA.CK.5914.01A	3	33906688	35785913	19	0.8044	LARGE-GAIN	FOCAL	2	"ARPP21,PDCD6IP"
TCGA.F5.6811.01A	3	35698217	35707334	7	1.1259	LARGE-GAIN	FOCAL	1	ARPP21
TCGA.AA.A00N.01A	3	35758730	35835161	9	1.8228	LARGE-GAIN	FOCAL	1	ARPP21
TCGA.AA.A00N.01A	3	36422084	36897922	29	0.8413	LARGE-GAIN	FOCAL	3	"DCLK3,STAC,TRANK1"
TCGA.AA.A00N.01A	3	37061754	37170496	33	0.7811	LARGE-GAIN	FOCAL	2	"LRRFIP2,MLH1"
TCGA.AA.3509.01A	3	37107251	37169050	18	0.8613	LARGE-GAIN	FOCAL	1	LRRFIP2
TCGA.AA.3861.01A	3	37284980	37376522	21	1.7112	LARGE-GAIN	FOCAL	1	GOLGA4
TCGA.AA.3862.01A	3	37336423	37376522	16	1.9877	LARGE-GAIN	FOCAL	1	GOLGA4
TCGA.AA.A00N.01A	3	37340277	38022186	61	0.6987	LARGE-GAIN	FOCAL	4	"C3orf35,CTDSPL,GOLGA4,ITGA9"
TCGA.AA.3509.01A	3	37366241	37370463	6	1.9546	LARGE-GAIN	FOCAL	1	GOLGA4
TCGA.AZ.4684.01A	3	37366241	37370463	6	1.6121	LARGE-GAIN	FOCAL	1	GOLGA4
TCGA.DM.A28M.01A	3	37366241	37370463	6	0.9143	LARGE-GAIN	FOCAL	1	GOLGA4
TCGA.AA.A010.01A	3	37774146	37791902	5	1.2308	LARGE-GAIN	FOCAL	1	ITGA9
TCGA.AG.A01W.01A	3	38099898	38105805	8	0.8466	LARGE-GAIN	FOCAL	1	DLEC1
TCGA.CK.5914.01A	3	38265282	38318421	20	0.7013	LARGE-GAIN	FOCAL	2	"OXSR1,SLC22A13"
TCGA.AA.A00N.01A	3	38307351	38318810	9	1.7173	LARGE-GAIN	FOCAL	1	SLC22A13
TCGA.AG.3909.01A	3	38307351	38318810	9	0.9674	LARGE-GAIN	FOCAL	1	SLC22A13
TCGA.AA.A010.01A	3	38307351	38388327	20	1.0166	LARGE-GAIN	FOCAL	3	"SLC22A13,SLC22A14,XYLB"
TCGA.AA.A010.01A	3	38603855	38622395	6	1.2813	LARGE-GAIN	FOCAL	1	SCN5A
TCGA.AA.A00N.01A	3	38674509	38966867	51	0.9258	LARGE-GAIN	FOCAL	3	"SCN10A,SCN11A,SCN5A"
TCGA.AA.A010.01A	3	38760093	38791516	9	0.8865	LARGE-GAIN	FOCAL	1	SCN10A
TCGA.AA.A00N.01A	3	39543530	40299550	17	1.2524	LARGE-GAIN	FOCAL	2	"MOBP,MYRIP"
TCGA.AG.A01W.01A	3	40274550	40408481	7	0.7063	LARGE-GAIN	FOCAL	2	"EIF1B,MYRIP"
TCGA.AA.A010.01A	3	42632344	42642431	4	1.5432	LARGE-GAIN	FOCAL	3	"NKTR,SEC22C,SS18L2"
TCGA.AG.3906.01A	3	42680278	42705251	9	0.8015	LARGE-GAIN	FOCAL	2	"NKTR,ZBTB47"
TCGA.AG.A016.01A	3	42702926	42705691	4	0.7721	LARGE-GAIN	FOCAL	1	ZBTB47
TCGA.A6.3808.01A	3	42732300	42799625	26	1.1654	LARGE-GAIN	FOCAL	3	"CCDC13,HHATL,KLHL40"
TCGA.CK.5914.01A	3	42751124	42794025	12	0.8679	LARGE-GAIN	FOCAL	1	CCDC13
TCGA.AA.A010.01A	3	42771921	43121142	32	0.708	LARGE-GAIN	FOCAL	8	"ACKR2,CCDC13,CYP8B1,FAM198A,HIGD1A,KRBOX1,POMGNT2,ZNF662"
TCGA.CK.5914.01A	3	44490955	44496571	5	0.9552	LARGE-GAIN	FOCAL	1	ZNF445
TCGA.AG.3906.01A	3	44606927	44635636	6	0.6996	LARGE-GAIN	FOCAL	2	"ZKSCAN7,ZNF660"
TCGA.AA.3862.01A	3	44841779	44853624	8	2.275	LARGE-GAIN	FOCAL	1	KIF15
TCGA.AA.3861.01A	3	44841779	44893679	24	1.1327	LARGE-GAIN	FOCAL	1	KIF15
TCGA.AA.3862.01A	3	44854520	44893679	16	0.7753	LARGE-GAIN	FOCAL	1	KIF15
TCGA.AA.A00N.01A	3	44926780	45017702	19	0.7079	LARGE-GAIN	FOCAL	2	"TGM4,ZDHHC3"
TCGA.AA.A00N.01A	3	46963497	46982424	5	0.7206	LARGE-GAIN	FOCAL	1	CCDC12
TCGA.CK.5914.01A	3	46963497	46982424	5	0.7492	LARGE-GAIN	FOCAL	1	CCDC12
TCGA.AA.A010.01A	3	47318721	47422532	12	0.9431	LARGE-GAIN	FOCAL	3	"KIF9,KLHL18,PTPN23"
TCGA.AG.3906.01A	3	47604043	47632121	5	1.4828	LARGE-GAIN	FOCAL	2	"CSPG5,SMARCC1"
TCGA.AA.A00F.01A	3	48493085	48501497	6	0.756	LARGE-GAIN	FOCAL	1	ATRIP
TCGA.A6.3808.01A	3	48562946	48601747	11	0.8184	LARGE-GAIN	FOCAL	3	"COL7A1,PFKFB4,UCN2"
TCGA.AG.3605.01A	3	48637871	48665801	11	1.16	LARGE-GAIN	FOCAL	3	"SLC26A6,TMEM89,UQCRC1"
TCGA.AA.A010.01A	3	49292791	49337863	17	0.9569	LARGE-GAIN	FOCAL	3	"C3orf62,CCDC36,USP4"
TCGA.AA.A010.01A	3	49377319	49395374	3	1.403	LARGE-GAIN	FOCAL	2	"GPX1,USP4"
TCGA.AA.A00N.01A	3	49466503	49688028	6	0.8745	LARGE-GAIN	FOCAL	3	"BSN,DAG1,NICN1"
TCGA.AG.A01W.01A	3	49727976	49740493	9	0.713	LARGE-GAIN	FOCAL	1	RNF123
TCGA.AG.3906.01A	3	50085639	50155717	35	0.7581	LARGE-GAIN	FOCAL	2	"RBM5,RBM6"
TCGA.AG.3906.01A	3	50333987	50369429	11	0.789	LARGE-GAIN	FOCAL	6	"HYAL1,HYAL2,HYAL3,NAT6,RASSF1,TUSC2"
TCGA.AA.A00J.01A	3	50388818	50395632	5	2.7635	LARGE-GAIN	FOCAL	2	"CYB561D2,TMEM115"
TCGA.CK.5914.01A	3	51378620	51399918	10	1.0094	LARGE-GAIN	FOCAL	1	DOCK3
TCGA.AG.A01W.01A	3	51400159	51405889	5	0.9205	LARGE-GAIN	FOCAL	1	DOCK3
TCGA.AA.A01Q.01A	3	51746437	51812627	5	1.0559	LARGE-GAIN	FOCAL	2	"GRM2,IQCF6"
TCGA.AG.3906.01A	3	51980165	52014387	13	1.3689	LARGE-GAIN	FOCAL	5	"ABHD14A,ABHD14B,GPR62,PARP3,PCBP4"
TCGA.AA.A010.01A	3	52130536	52188283	10	0.8406	LARGE-GAIN	FOCAL	1	POC1A
TCGA.AG.3906.01A	3	52291429	52324421	9	1.0051	LARGE-GAIN	FOCAL	2	"GLYCTK,WDR82"
TCGA.AG.A01W.01A	3	52527291	52543539	8	0.7857	LARGE-GAIN	FOCAL	1	STAB1
TCGA.AG.3906.01A	3	52692166	52730518	20	0.8951	LARGE-GAIN	FOCAL	3	"GLT8D1,GNL3,PBRM1"
TCGA.AA.A00Q.01A	3	52830449	52842079	3	0.747	LARGE-GAIN	FOCAL	1	ITIH3
TCGA.AA.A010.01A	3	53326173	53381358	7	0.8521	LARGE-GAIN	FOCAL	1	DCP1A
TCGA.AA.A010.01A	3	53700314	53820799	33	0.7684	LARGE-GAIN	FOCAL	1	CACNA1D
TCGA.AA.A02W.01A	3	53903999	53907019	4	2.7493	LARGE-GAIN	FOCAL	1	ACTR8
TCGA.A6.3808.01A	3	53925710	56593512	63	0.8543	LARGE-GAIN	FOCAL	6	"CACNA2D3,CCDC66,ERC2,LRTM1,SELK,WNT5A"
TCGA.AA.3952	3	54345399	54559102	65	0.9139	LARGE-GAIN	FOCAL	1	CACNA2D3
TCGA.AA.A00N.01A	3	54786577	55508358	31	0.7763	LARGE-GAIN	FOCAL	3	"CACNA2D3,LRTM1,WNT5A"
TCGA.AA.A00N.01A	3	55717776	56591176	16	0.9316	LARGE-GAIN	FOCAL	1	ERC2
TCGA.AA.A010.01A	3	56716652	56835679	11	0.7852	LARGE-GAIN	FOCAL	2	"ARHGEF3,FAM208A"
TCGA.AA.A010.01A	3	57486993	57618937	23	0.7924	LARGE-GAIN	FOCAL	4	"ARF4,DENND6A,DNAH12,PDE12"
TCGA.CK.5914.01A	3	57911517	58097487	19	0.9608	LARGE-GAIN	FOCAL	2	"FLNB,SLMAP"
TCGA.AG.3909.01A	3	58062743	58110012	21	0.7974	LARGE-GAIN	FOCAL	1	FLNB
TCGA.AA.A00N.01A	3	58062743	58116420	24	1.1098	LARGE-GAIN	FOCAL	1	FLNB
TCGA.AA.A010.01A	3	58089635	58178363	37	0.7993	LARGE-GAIN	FOCAL	2	"DNASE1L3,FLNB"
TCGA.CK.5914.01A	3	58183520	58260333	11	0.8635	LARGE-GAIN	FOCAL	2	"ABHD6,DNASE1L3"
TCGA.AG.3906.01A	3	58191141	58368244	18	0.73	LARGE-GAIN	FOCAL	4	"ABHD6,DNASE1L3,PXK,RPP14"
TCGA.AG.3909.01A	3	58502882	58517381	8	0.7148	LARGE-GAIN	FOCAL	1	ACOX2
TCGA.AG.3909.01A	3	58634955	58739452	5	0.8004	LARGE-GAIN	FOCAL	2	"C3orf67,FAM3D"
TCGA.CA.5254	3	59622684	59978196	289	0.7685	LARGE-GAIN	FOCAL	1	FHIT
TCGA.AA.3667	3	59759118	59773059	19	0.8037	LARGE-GAIN	FOCAL	1	FHIT
TCGA.AA.A02K.01A	3	60522577	61734501	3	1.3621	LARGE-GAIN	FOCAL	2	"FHIT,PTPRG"
TCGA.AZ.4684.01A	3	62216841	62316938	19	0.8549	LARGE-GAIN	FOCAL	2	"C3orf14,PTPRG"
TCGA.AA.A00N.01A	3	62431400	62484787	10	1.1607	LARGE-GAIN	FOCAL	1	CADPS
TCGA.CK.5914.01A	3	62498367	62751509	17	0.7602	LARGE-GAIN	FOCAL	1	CADPS
TCGA.AA.A00N.01A	3	62535537	63638322	18	1.2935	LARGE-GAIN	FOCAL	2	"CADPS,SYNPR"
TCGA.AA.A00N.01A	3	63938003	63985089	11	0.6895	LARGE-GAIN	FOCAL	1	ATXN7
TCGA.AA.A010.01A	3	64004234	64148643	11	1.1478	LARGE-GAIN	FOCAL	2	"PRICKLE2,PSMD6"
TCGA.AA.A00N.01A	3	64084675	64598974	23	1.5344	LARGE-GAIN	FOCAL	2	"ADAMTS9,PRICKLE2"
TCGA.DM.A1HB	3	64192036	64252423	39	0.6809	LARGE-GAIN	FOCAL	1	PRICKLE2
TCGA.AA.A00N.01A	3	64600970	64639980	12	0.8665	LARGE-GAIN	FOCAL	1	ADAMTS9
TCGA.AA.A010.01A	3	64673182	65376780	12	0.8103	LARGE-GAIN	FOCAL	2	"ADAMTS9,MAGI1"
TCGA.AA.A00N.01A	3	65376780	67048711	40	0.7317	LARGE-GAIN	FOCAL	3	"LRIG1,MAGI1,SLC25A26"
TCGA.AA.A010.01A	3	66293576	67053572	29	0.7135	LARGE-GAIN	FOCAL	3	"KBTBD8,LRIG1,SLC25A26"
TCGA.AA.A00N.01A	3	67426127	69036552	24	0.7042	LARGE-GAIN	FOCAL	4	"EOGT,FAM19A1,FAM19A4,SUCLG2"
TCGA.AA.A00N.01A	3	69915381	71008361	13	1.2832	LARGE-GAIN	FOCAL	2	"FOXP1,MITF"
TCGA.AA.3850	3	70073642	70079144	4	0.74655	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	3	77147136	87325430	95	0.8458	LARGE-GAIN	FOCAL	7	"CADM2,CHMP2B,GBE1,POU1F1,ROBO1,ROBO2,VGLL3"
TCGA.AY.6196	3	82712353	83438123	115	0.9335	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4614	3	88454306	89905268	266	1.0325	LARGE-GAIN	FOCAL	1	EPHA3
TCGA.AA.3861.01A	3	89499299	93692459	18	1.5458	LARGE-GAIN	FOCAL	2	"EPHA3,PROS1"
TCGA.AA.3862.01A	3	89528520	93629452	12	2.2756	LARGE-GAIN	FOCAL	2	"EPHA3,PROS1"
TCGA.DY.A1DC	3	94298116	94324289	11	1.5467	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	3	97185195	97202728	4	0.6785	LARGE-GAIN	FOCAL	1	EPHA6
TCGA.AA.A00N.01A	3	97251154	97634403	29	0.802	LARGE-GAIN	FOCAL	3	"ARL6,CRYBG3,EPHA6"
TCGA.CK.5914.01A	3	97652488	97677845	12	0.9656	LARGE-GAIN	FOCAL	2	"CRYBG3,MINA"
TCGA.AA.A00N.01A	3	97731138	98216508	17	0.7439	LARGE-GAIN	FOCAL	10	"GABRR3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K3,OR5K4"
TCGA.AA.3509.01A	3	97851675	98001731	7	1.9084	LARGE-GAIN	FOCAL	5	"OR5H1,OR5H14,OR5H15,OR5H2,OR5H6"
TCGA.AA.A00N.01A	3	98619917	99536756	4	1.5445	LARGE-GAIN	FOCAL	3	"CMSS1,COL8A1,DCBLD2"
TCGA.DY.A1DC	3	98924049	98952442	10	1.4858	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	99102463	99113227	14	1.4293	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	3	100455373	101136390	74	0.9309	LARGE-GAIN	FOCAL	4	"ABI3BP,IMPG2,SENP7,TFG"
TCGA.A6.3808.01A	3	100497087	100604959	22	1.8225	LARGE-GAIN	FOCAL	1	ABI3BP
TCGA.AA.3509.01A	3	100508262	100565166	7	1.3301	LARGE-GAIN	FOCAL	1	ABI3BP
TCGA.AZ.4684.01A	3	100508262	100565166	7	1.4357	LARGE-GAIN	FOCAL	1	ABI3BP
TCGA.AA.3509.01A	3	101022970	101047270	6	1.4071	LARGE-GAIN	FOCAL	2	"IMPG2,SENP7"
TCGA.AA.A010.01A	3	101219848	101451290	30	0.7269	LARGE-GAIN	FOCAL	6	"CEP97,PCNP,RPL24,SENP7,TRMT10C,ZBTB11"
TCGA.AA.3509.01A	3	102196270	105271265	14	0.9397	LARGE-GAIN	FOCAL	2	"ALCAM,ZPLD1"
TCGA.AY.6196	3	102872594	104244855	340	1.0182	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	105263623	105270595	12	1.8851	LARGE-GAIN	FOCAL	1	ALCAM
TCGA.DY.A1DC	3	105276594	105694855	96	0.6921	LARGE-GAIN	FOCAL	2	"ALCAM,CBLB"
TCGA.DY.A1DC	3	105695407	105696704	4	1.4798	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	105841010	105850037	6	1.3928	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	105858329	106113013	68	0.728	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	106115983	106136030	18	1.2466	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	107206495	107879985	221	0.7034	LARGE-GAIN	FOCAL	3	"BBX,CD47,IFT57"
TCGA.DY.A1DC	3	107886924	107895760	7	1.7276	LARGE-GAIN	FOCAL	1	IFT57
TCGA.DY.A1DC	3	110258635	110271990	9	1.7623	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	3	112324246	112715691	24	0.7578	LARGE-GAIN	FOCAL	4	"CCDC80,CD200R1,CD200R1L,GTPBP8"
TCGA.AA.A00N.01A	3	112738348	112998619	12	1.3983	LARGE-GAIN	FOCAL	2	"BOC,C3orf17"
TCGA.AA.A010.01A	3	112738348	113004172	18	1.1134	LARGE-GAIN	FOCAL	2	"BOC,C3orf17"
TCGA.AA.A00N.01A	3	112999358	113135324	22	0.7244	LARGE-GAIN	FOCAL	2	"BOC,CFAP44"
TCGA.AA.3509.01A	3	113440556	113442222	3	1.8109	LARGE-GAIN	FOCAL	1	NAA50
TCGA.AZ.4684.01A	3	113440556	113442222	3	1.939	LARGE-GAIN	FOCAL	1	NAA50
TCGA.AG.3906.01A	3	113652341	113679472	12	0.8124	LARGE-GAIN	FOCAL	2	"GRAMD1C,ZDHHC23"
TCGA.AZ.4684.01A	3	113697668	113772362	14	0.8051	LARGE-GAIN	FOCAL	1	KIAA1407
TCGA.DY.A1DC	3	116313536	116319456	5	1.6748	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	116324308	116429697	40	0.7459	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	116431421	116445323	10	1.5296	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	116667927	116671878	4	2.3168	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	116673803	116694928	6	0.7446	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	116695210	116699511	5	2.0787	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	116707555	116802559	52	0.7412	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	116803858	116804057	3	1.5356	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	116811192	117004940	84	0.7027	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	117014064	117023556	3	2.2562	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	117603114	117607589	8	1.6717	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A020	3	118156955	118157896	3	1.4971	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	3	119101089	119120621	6	0.9301	LARGE-GAIN	FOCAL	1	ARHGAP31
TCGA.AA.A010.01A	3	119187815	119222735	15	0.9503	LARGE-GAIN	FOCAL	2	"POGLUT1,TIMMDC1"
TCGA.AA.A010.01A	3	119300990	119535878	46	0.8939	LARGE-GAIN	FOCAL	6	"ADPRH,COX17,MAATS1,NR1I2,PLA1A,POPDC2"
TCGA.AZ.4684.01A	3	119585356	119634844	4	1.5538	LARGE-GAIN	FOCAL	1	GSK3B
TCGA.AA.3509.01A	3	120673740	121134677	21	1.0178	LARGE-GAIN	FOCAL	1	STXBP5L
TCGA.AZ.4684.01A	3	120673740	121134677	21	1.0911	LARGE-GAIN	FOCAL	1	STXBP5L
TCGA.AA.A01Q.01A	3	121264525	121383297	21	1.0757	LARGE-GAIN	FOCAL	5	"ARGFX,FBXO40,GOLGB1,HCLS1,POLQ"
TCGA.AG.3909.01A	3	121303732	121355941	13	1.0066	LARGE-GAIN	FOCAL	3	"ARGFX,FBXO40,HCLS1"
TCGA.AA.A00N.01A	3	121340243	121361710	11	1.2937	LARGE-GAIN	FOCAL	2	"FBXO40,HCLS1"
TCGA.AZ.4684.01A	3	121413177	121421276	5	1.2649	LARGE-GAIN	FOCAL	1	GOLGB1
TCGA.AA.A00N.01A	3	121449674	121514255	7	1.0649	LARGE-GAIN	FOCAL	2	"GOLGB1,IQCB1"
TCGA.AA.3509.01A	3	121508872	121547678	8	1.8235	LARGE-GAIN	FOCAL	1	IQCB1
TCGA.AZ.4684.01A	3	121508872	121547678	8	1.8333	LARGE-GAIN	FOCAL	1	IQCB1
TCGA.AA.A00N.01A	3	121591377	122044082	44	0.8481	LARGE-GAIN	FOCAL	6	"CASR,CD86,CSTA,EAF2,ILDR1,SLC15A2"
TCGA.AA.A01Q.01A	3	121711959	121740799	6	1.3736	LARGE-GAIN	FOCAL	1	ILDR1
TCGA.AA.A00N.01A	3	122160824	122186132	8	0.714	LARGE-GAIN	FOCAL	1	KPNA1
TCGA.AA.A01Q.01A	3	122512405	122598061	10	0.6903	LARGE-GAIN	FOCAL	2	"DIRC2,HSPBAP1"
TCGA.AA.A010.01A	3	122630264	123471128	96	0.7047	LARGE-GAIN	FOCAL	6	"ADCY5,HACD2,MYLK,PDIA5,SEC22A,SEMA5B"
TCGA.AA.A00N.01A	3	122662236	124449269	166	0.9129	LARGE-GAIN	FOCAL	10	"ADCY5,CCDC14,HACD2,KALRN,MYLK,PDIA5,ROPN1,SEC22A,SEMA5B,UMPS"
TCGA.CK.5914.01A	3	123339006	123512487	29	0.8357	LARGE-GAIN	FOCAL	1	MYLK
TCGA.AG.3909.01A	3	123356870	123512487	26	1.0047	LARGE-GAIN	FOCAL	1	MYLK
TCGA.AA.A01Q.01A	3	123440946	124458874	87	0.8409	LARGE-GAIN	FOCAL	5	"CCDC14,KALRN,MYLK,ROPN1,UMPS"
TCGA.AA.3509.01A	3	123671348	123675524	4	1.8304	LARGE-GAIN	FOCAL	1	CCDC14
TCGA.AZ.4684.01A	3	123671348	123675524	4	2.0521	LARGE-GAIN	FOCAL	1	CCDC14
TCGA.DM.A28M.01A	3	123671348	123675524	4	1.8787	LARGE-GAIN	FOCAL	1	CCDC14
TCGA.CK.5914.01A	3	123695670	124369607	46	0.8273	LARGE-GAIN	FOCAL	2	"KALRN,ROPN1"
TCGA.AG.3909.01A	3	123813621	124351230	39	0.8653	LARGE-GAIN	FOCAL	1	KALRN
TCGA.AA.A010.01A	3	124281672	124398243	18	0.899	LARGE-GAIN	FOCAL	1	KALRN
TCGA.AA.A01Q.01A	3	124538537	124592246	6	0.8558	LARGE-GAIN	FOCAL	1	ITGB5
TCGA.AA.A010.01A	3	124689467	124731450	11	0.6828	LARGE-GAIN	FOCAL	1	HEG1
TCGA.AA.A01Q.01A	3	124802707	125295001	34	0.7546	LARGE-GAIN	FOCAL	4	"OSBPL11,SLC12A8,SNX4,ZNF148"
TCGA.AZ.4684.01A	3	124951218	124996514	4	1.2344	LARGE-GAIN	FOCAL	1	ZNF148
TCGA.AA.A00N.01A	3	125735524	125899711	30	0.7308	LARGE-GAIN	FOCAL	2	"ALDH1L1,SLC41A3"
TCGA.AG.3906.01A	3	127327628	127396281	18	0.6967	LARGE-GAIN	FOCAL	3	"ABTB1,MCM2,PODXL2"
TCGA.AG.A01L.01A	3	127390237	127398779	6	0.8332	LARGE-GAIN	FOCAL	2	"ABTB1,PODXL2"
TCGA.AA.A00N.01A	3	127398779	127500584	7	0.7027	LARGE-GAIN	FOCAL	2	"ABTB1,MGLL"
TCGA.AZ.4684.01A	3	127641893	127648957	4	1.2311	LARGE-GAIN	FOCAL	1	KBTBD12
TCGA.AG.A00C.01A	3	127771613	127783679	6	0.6955	LARGE-GAIN	FOCAL	1	SEC61A1
TCGA.AG.3906.01A	3	127774315	127806497	12	0.7691	LARGE-GAIN	FOCAL	2	"RUVBL1,SEC61A1"
TCGA.AA.A010.01A	3	127823579	128080953	11	0.7238	LARGE-GAIN	FOCAL	2	"EEFSEC,RUVBL1"
TCGA.AA.A00N.01A	3	127842385	128126911	9	1.0327	LARGE-GAIN	FOCAL	2	"EEFSEC,RUVBL1"
TCGA.AA.A010.01A	3	128369341	128631312	24	0.6881	LARGE-GAIN	FOCAL	3	"ACAD9,RAB7A,RPN1"
TCGA.AA.3815.01A	3	128618078	128620064	2	1.3239	LARGE-GAIN	FOCAL	1	ACAD9
TCGA.AG.3906.01A	3	128848874	128853623	4	0.9029	LARGE-GAIN	FOCAL	2	"ISY1,ISY1-RAB43"
TCGA.AG.A01W.01A	3	128875867	128881481	5	1.0055	LARGE-GAIN	FOCAL	2	"ISY1,ISY1-RAB43"
TCGA.AG.3909.01A	3	129034062	129147208	10	0.6795	LARGE-GAIN	FOCAL	2	"EFCAB12,H1FX"
TCGA.AA.A00N.01A	3	129120399	129147208	9	0.9494	LARGE-GAIN	FOCAL	1	EFCAB12
TCGA.AG.A008.01A	3	130116426	130150282	2	1.0094	LARGE-GAIN	FOCAL	1	COL6A5
TCGA.AA.A010.01A	3	130435192	130660407	15	0.8389	LARGE-GAIN	FOCAL	2	"ATP2C1,PIK3R4"
TCGA.CK.5914.01A	3	131261372	131293847	6	0.9321	LARGE-GAIN	FOCAL	1	CPNE4
TCGA.CK.5914.01A	3	131418687	132051019	7	0.9151	LARGE-GAIN	FOCAL	2	"ACPP,CPNE4"
TCGA.AA.A01Q.01A	3	131418687	132153327	14	0.8406	LARGE-GAIN	FOCAL	3	"ACPP,CPNE4,DNAJC13"
TCGA.AG.3906.01A	3	132181293	132199166	10	0.9999	LARGE-GAIN	FOCAL	1	DNAJC13
TCGA.AA.A00N.01A	3	132218519	132347136	34	0.829	LARGE-GAIN	FOCAL	3	"ACAD11,ACKR4,DNAJC13"
TCGA.CK.5914.01A	3	132279893	132298271	5	0.7409	LARGE-GAIN	FOCAL	1	ACAD11
TCGA.AA.A010.01A	3	132363592	132384628	4	1.2859	LARGE-GAIN	FOCAL	2	"ACAD11,UBA5"
TCGA.AA.A00N.01A	3	132440760	133191209	11	0.7016	LARGE-GAIN	FOCAL	3	"BFSP2,NPHP3,TMEM108"
TCGA.AA.A010.01A	3	132440760	133193715	12	0.8637	LARGE-GAIN	FOCAL	3	"BFSP2,NPHP3,TMEM108"
TCGA.DY.A1DC	3	132640365	132641235	3	2.5235	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01Q.01A	3	133098559	133191209	9	1.0034	LARGE-GAIN	FOCAL	2	"BFSP2,TMEM108"
TCGA.CK.5914.01A	3	133118927	133191209	6	0.7935	LARGE-GAIN	FOCAL	1	BFSP2
TCGA.AG.A01L.01A	3	133614199	133657209	5	0.8156	LARGE-GAIN	FOCAL	3	"C3orf36,RAB6B,SLCO2A1"
TCGA.DM.A1HB	3	133698348	133752967	15	0.8511	LARGE-GAIN	FOCAL	1	SLCO2A1
TCGA.AA.A00N.01A	3	134670216	134968191	13	1.3922	LARGE-GAIN	FOCAL	1	EPHB1
TCGA.AG.3909.01A	3	134670216	134977836	14	0.8976	LARGE-GAIN	FOCAL	1	EPHB1
TCGA.AA.A00N.01A	3	134977836	135825026	14	0.7413	LARGE-GAIN	FOCAL	2	"EPHB1,PPP2R3A"
TCGA.AG.3611.01A	3	135974650	135980742	4	0.7054	LARGE-GAIN	FOCAL	1	PCCB
TCGA.AA.A00N.01A	3	136012568	136057007	10	0.9206	LARGE-GAIN	FOCAL	2	"PCCB,STAG1"
TCGA.AA.A00N.01A	3	137717659	137790444	11	1.7247	LARGE-GAIN	FOCAL	2	"CLDN18,DZIP1L"
TCGA.AA.A00N.01A	3	138351720	138461363	21	0.6912	LARGE-GAIN	FOCAL	2	"FAIM,PIK3CB"
TCGA.AG.3906.01A	3	138664414	138669057	3	1.5516	LARGE-GAIN	FOCAL	2	"FOXL2,FOXL2NB"
TCGA.AG.A00C.01A	3	138668310	138724269	3	0.7678	LARGE-GAIN	FOCAL	2	"FOXL2NB,PRR23A"
TCGA.AA.3667	3	138879099	138880711	3	1.294	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	3	139062819	139237213	34	0.8228	LARGE-GAIN	FOCAL	4	"COPB2,MRPS22,RBP1,RBP2"
TCGA.AG.3909.01A	3	139108295	139237213	7	0.8321	LARGE-GAIN	FOCAL	3	"COPB2,RBP1,RBP2"
TCGA.AA.A00N.01A	3	139279834	140419677	23	1.3159	LARGE-GAIN	FOCAL	3	"CLSTN2,NMNAT3,TRIM42"
TCGA.AG.3909.01A	3	139292382	140419677	22	0.9025	LARGE-GAIN	FOCAL	3	"CLSTN2,NMNAT3,TRIM42"
TCGA.AA.A00N.01A	3	140865947	140997145	3	1.498	LARGE-GAIN	FOCAL	2	"PXYLP1,SPSB4"
TCGA.AA.A00N.01A	3	141259317	141305451	15	0.9958	LARGE-GAIN	FOCAL	1	RASA2
TCGA.DM.A28M.01A	3	141277695	141278699	2	2.2407	LARGE-GAIN	FOCAL	1	RASA2
TCGA.AA.A00N.01A	3	141944100	142137611	30	0.7105	LARGE-GAIN	FOCAL	2	"GK5,XRN1"
TCGA.CK.5914.01A	3	142238464	142268925	11	0.7837	LARGE-GAIN	FOCAL	1	ATR
TCGA.AA.A00N.01A	3	142985506	143691125	17	0.6983	LARGE-GAIN	FOCAL	2	"C3orf58,SLC9A9"
TCGA.DY.A1DC	3	144186115	144252371	22	1.2256	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	3	145788464	145809536	11	1.3231	LARGE-GAIN	FOCAL	1	PLOD2
TCGA.AA.A00N.01A	3	146303829	146322892	7	0.6828	LARGE-GAIN	FOCAL	1	PLSCR5
TCGA.AA.A00N.01A	3	148458781	148614288	20	0.9489	LARGE-GAIN	FOCAL	3	"AGTR1,CPA3,CPB1"
TCGA.AG.3906.01A	3	148711913	148714482	3	1.0664	LARGE-GAIN	FOCAL	1	GYG1
TCGA.AA.A00N.01A	3	148903008	149050995	18	0.9712	LARGE-GAIN	FOCAL	2	"CP,TM4SF18"
TCGA.AG.3906.01A	3	149048061	149095118	6	0.9691	LARGE-GAIN	FOCAL	2	"TM4SF1,TM4SF18"
TCGA.AA.A00N.01A	3	149192616	149290624	10	0.7707	LARGE-GAIN	FOCAL	2	"TM4SF4,WWTR1"
TCGA.AA.A00N.01A	3	150421276	151102801	48	0.9132	LARGE-GAIN	FOCAL	9	"CLRN1,ERICH6,GPR171,GPR87,MED12L,P2RY12,P2RY13,P2RY14,SIAH2"
TCGA.CK.5914.01A	3	151085886	151134053	18	0.8477	LARGE-GAIN	FOCAL	2	"MED12L,P2RY12"
TCGA.AA.A00N.01A	3	151105576	151134053	7	1.9237	LARGE-GAIN	FOCAL	1	MED12L
TCGA.AA.A01Q.01A	3	151105576	151148026	8	1.2067	LARGE-GAIN	FOCAL	1	MED12L
TCGA.AA.A00N.01A	3	152058317	152176992	10	1.2929	LARGE-GAIN	FOCAL	2	"MBNL1,TMEM14E"
TCGA.AA.A00Q.01A	3	153840225	153972462	2	0.7749	LARGE-GAIN	FOCAL	1	ARHGEF26
TCGA.AA.A00N.01A	3	153867117	154017584	23	0.8986	LARGE-GAIN	FOCAL	2	"ARHGEF26,DHX36"
TCGA.DY.A1DC	3	157172111	157172487	4	1.4387	LARGE-GAIN	FOCAL	1	VEPH1
TCGA.AA.3862.01A	3	160131247	160253231	29	1.4285	LARGE-GAIN	FOCAL	3	"KPNA4,SMC4,TRIM59"
TCGA.AA.A02H.01A	3	160951150	164793656	59	0.8849	LARGE-GAIN	FOCAL	4	"NMD3,OTOL1,SI,SPTSSB"
TCGA.CK.5914.01A	3	160960249	164793656	54	0.7753	LARGE-GAIN	FOCAL	4	"NMD3,OTOL1,SI,SPTSSB"
TCGA.AA.A00N.01A	3	161214675	164793656	46	1.1553	LARGE-GAIN	FOCAL	2	"OTOL1,SI"
TCGA.DY.A1DC	3	162489770	162632089	18	1.6356	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	162744812	162750078	8	1.4845	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	162901014	162908210	7	1.5098	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	3	164709103	168849165	124	1.0818	LARGE-GAIN	FOCAL	10	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.3509.01A	3	164709902	164716281	4	1.8634	LARGE-GAIN	FOCAL	1	SI
TCGA.AA.A00N.01A	3	165491122	168849165	88	0.8326	LARGE-GAIN	FOCAL	8	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,WDR49,ZBBX"
TCGA.AA.3509.01A	3	169500204	169514486	8	1.8093	LARGE-GAIN	FOCAL	2	"LRRC34,MYNN"
TCGA.AA.3509.01A	3	169694682	169814981	8	0.9073	LARGE-GAIN	FOCAL	3	"GPR160,PHC3,SEC62"
TCGA.AZ.4684.01A	3	169694682	169814981	8	1.0073	LARGE-GAIN	FOCAL	3	"GPR160,PHC3,SEC62"
TCGA.AA.A00N.01A	3	170732286	171442436	57	0.8688	LARGE-GAIN	FOCAL	3	"PLD1,SLC2A2,TNIK"
TCGA.AG.A01W.01A	3	170863740	170968243	3	1.194	LARGE-GAIN	FOCAL	1	TNIK
TCGA.AA.A00N.01A	3	171830218	173525438	71	0.759	LARGE-GAIN	FOCAL	7	"ECT2,FNDC3B,GHSR,NCEH1,NLGN1,SPATA16,TNFSF10"
TCGA.AZ.4684.01A	3	172479350	178957727	84	0.7416	LARGE-GAIN	FOCAL	9	"ECT2,KCNMB2,KCNMB3,NAALADL2,NLGN1,PIK3CA,SPATA16,TBL1XR1,ZMAT3"
TCGA.AD.6888	3	173250260	173289598	10	0.9373	LARGE-GAIN	FOCAL	1	NLGN1
TCGA.DY.A1DC	3	174826588	174836654	6	1.9722	LARGE-GAIN	FOCAL	1	NAALADL2
TCGA.AA.A00N.01A	3	174951709	178560414	26	1.0607	LARGE-GAIN	FOCAL	3	"KCNMB2,NAALADL2,TBL1XR1"
TCGA.AA.A00N.01A	3	178916607	178936925	9	0.7796	LARGE-GAIN	FOCAL	1	PIK3CA
TCGA.CK.5914.01A	3	178935976	178962266	15	0.7283	LARGE-GAIN	FOCAL	2	"KCNMB3,PIK3CA"
TCGA.AA.A00N.01A	3	179525444	179615889	12	1.026	LARGE-GAIN	FOCAL	1	PEX5L
TCGA.AA.A00N.01A	3	180359731	182662822	63	0.8421	LARGE-GAIN	FOCAL	6	"ATP11B,CCDC39,DCUN1D1,DNAJC19,FXR1,SOX2"
TCGA.AA.A010.01A	3	183145628	183273098	8	1.1001	LARGE-GAIN	FOCAL	2	"KLHL6,MCF2L2"
TCGA.AG.3906.01A	3	183526830	183558325	6	1.2575	LARGE-GAIN	FOCAL	3	"MAP6D1,PARL,YEATS2"
TCGA.AG.A00C.01A	3	183854373	183862338	11	0.8913	LARGE-GAIN	FOCAL	1	EIF2B5
TCGA.AA.A00J.01A	3	183859661	183860826	4	3.3076	LARGE-GAIN	FOCAL	1	EIF2B5
TCGA.AG.3906.01A	3	183860558	183888110	16	1.1069	LARGE-GAIN	FOCAL	2	"DVL3,EIF2B5"
TCGA.AG.3906.01A	3	183975253	184002713	7	1.5301	LARGE-GAIN	FOCAL	2	"CAMK2N2,ECE2"
TCGA.AG.3906.01A	3	184003239	184023549	16	0.7006	LARGE-GAIN	FOCAL	2	"ECE2,PSMD2"
TCGA.AG.3906.01A	3	184024086	184046380	22	1.3329	LARGE-GAIN	FOCAL	2	"EIF4G1,PSMD2"
TCGA.A6.3808.01A	3	184052484	184064678	6	1.2749	LARGE-GAIN	FOCAL	3	"CLCN2,EIF4G1,FAM131A"
TCGA.AG.A015.01A	3	184064678	184070781	3	0.7633	LARGE-GAIN	FOCAL	1	CLCN2
TCGA.AG.3906.01A	3	184081220	184085926	4	0.8792	LARGE-GAIN	FOCAL	1	POLR2H
TCGA.AG.3891.01A	3	184082706	184106395	18	0.8983	LARGE-GAIN	FOCAL	3	"CHRD,POLR2H,THPO"
TCGA.AG.3906.01A	3	184090269	184106395	14	1.6847	LARGE-GAIN	FOCAL	2	"CHRD,THPO"
TCGA.AG.3906.01A	3	184106684	184297217	10	0.6846	LARGE-GAIN	FOCAL	2	"CHRD,EPHB3"
TCGA.AA.A010.01A	3	184966172	185416033	61	0.7919	LARGE-GAIN	FOCAL	6	"EHHADH,IGF2BP2,LIPH,MAP3K13,SENP2,TMEM41A"
TCGA.AA.A00N.01A	3	186330883	186461438	31	0.8458	LARGE-GAIN	FOCAL	4	"AHSG,FETUB,HRG,KNG1"
TCGA.NH.A50U	3	187123387	187124107	4	1.4774	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	3	188123861	189611948	32	0.7383	LARGE-GAIN	FOCAL	3	"LPP,TP63,TPRG1"
TCGA.AA.A00N.01A	3	188123861	189713028	46	1.1454	LARGE-GAIN	FOCAL	4	"LPP,P3H2,TP63,TPRG1"
TCGA.AA.A00N.01A	3	190105922	190127703	5	1.4064	LARGE-GAIN	FOCAL	1	CLDN16
TCGA.AA.A00N.01A	3	190347121	190366096	4	1.2427	LARGE-GAIN	FOCAL	1	IL1RAP
TCGA.AA.A00N.01A	3	191092850	192444890	13	0.8141	LARGE-GAIN	FOCAL	3	"CCDC50,FGF12,PYDC2"
TCGA.CK.5914.01A	3	192988371	193125056	32	0.7302	LARGE-GAIN	FOCAL	3	"ATP13A4,ATP13A5,HRASLS"
TCGA.AA.A00N.01A	3	192988371	193409828	87	0.7826	LARGE-GAIN	FOCAL	4	"ATP13A4,ATP13A5,HRASLS,OPA1"
TCGA.AG.3906.01A	3	193854158	193855461	4	1.1863	LARGE-GAIN	FOCAL	1	HES1
TCGA.AA.3979	3	194770849	194778444	3	1.9733	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	3	195041383	195306160	20	0.7076	LARGE-GAIN	FOCAL	3	"ACAP2,APOD,PPP1R2"
TCGA.AG.A01L.01A	3	195459956	195491821	12	0.7574	LARGE-GAIN	FOCAL	2	"MUC20,MUC4"
TCGA.AG.3906.01A	3	195475723	195491821	10	1.1359	LARGE-GAIN	FOCAL	1	MUC4
TCGA.CK.5914.01A	3	195501013	195538578	15	0.838	LARGE-GAIN	FOCAL	1	MUC4
TCGA.CM.4750.01A	3	195506167	195513326	10	0.846	LARGE-GAIN	FOCAL	1	MUC4
TCGA.AG.A015.01A	3	195593708	195605881	3	0.8452	LARGE-GAIN	FOCAL	1	TNK2
TCGA.AG.A01L.01A	3	195593708	195610001	6	0.8338	LARGE-GAIN	FOCAL	1	TNK2
TCGA.AG.3906.01A	3	196281050	196310997	4	0.9807	LARGE-GAIN	FOCAL	2	"FBXO45,WDR53"
TCGA.AA.A01Q.01A	3	196509471	196630352	18	0.8485	LARGE-GAIN	FOCAL	2	"PAK2,SENP5"
TCGA.AA.A02K.01A	3	196529842	196547226	10	0.868	LARGE-GAIN	FOCAL	1	PAK2
TCGA.AA.A00N.01A	3	196792116	196921309	21	0.7162	LARGE-GAIN	FOCAL	1	DLG1
TCGA.DM.A1D0	3	197724347	197833757	14	0.9994	LARGE-GAIN	FOCAL	1	LMLN
TCGA.AG.3726	3	197792875	197833757	6	0.7494	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	3	198507563	198725496	4	0.8991	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	4	53303	289768	13	0.6841	LARGE-GAIN	FOCAL	3	"ZNF595,ZNF718,ZNF732"
TCGA.AG.A01W.01A	4	645882	653770	10	0.8624	LARGE-GAIN	FOCAL	1	PDE6B
TCGA.AF.3914.01A	4	997758	1018060	3	2.4999	LARGE-GAIN	FOCAL	2	"FGFRL1,IDUA"
TCGA.AG.3906.01A	4	1670333	1705275	7	0.875	LARGE-GAIN	FOCAL	2	"FAM53A,SLBP"
TCGA.AA.A00J.01A	4	1729398	1732851	3	4.5496	LARGE-GAIN	FOCAL	1	TACC3
TCGA.AG.3906.01A	4	1807075	1850805	12	1.2333	LARGE-GAIN	FOCAL	2	"FGFR3,LETM1"
TCGA.AM.5820	4	2035596	2104335	8	0.6882	LARGE-GAIN	FOCAL	3	"C4orf48,NAT8L,POLN"
TCGA.AA.A010.01A	4	2632702	2717700	15	0.8942	LARGE-GAIN	FOCAL	1	FAM193A
TCGA.AG.3906.01A	4	2822290	2834008	6	1.3335	LARGE-GAIN	FOCAL	1	SH3BP2
TCGA.AG.A00Y.01A	4	2940508	2941207	3	3.7629	LARGE-GAIN	FOCAL	1	NOP14
TCGA.AG.3906.01A	4	3088651	3105500	3	1.2367	LARGE-GAIN	FOCAL	1	HTT
TCGA.AA.A010.01A	4	3146831	3215644	26	0.6917	LARGE-GAIN	FOCAL	1	HTT
TCGA.AA.A00Z.01A	4	3149680	3447741	10	1.0497	LARGE-GAIN	FOCAL	4	"HGFAC,HTT,MSANTD1,RGS12"
TCGA.AM.5820	4	3225388	3265709	17	0.7479	LARGE-GAIN	FOCAL	2	"HTT,MSANTD1"
TCGA.AA.A00N.01A	4	5141558	5690872	31	0.7355	LARGE-GAIN	FOCAL	2	"EVC2,STK32B"
TCGA.AA.A010.01A	4	5749836	5844754	22	0.7617	LARGE-GAIN	FOCAL	2	"CRMP1,EVC"
TCGA.AM.5820	4	5751825	5760040	18	0.8905	LARGE-GAIN	FOCAL	1	EVC
TCGA.AG.A032.01A	4	7042966	7055760	3	2.7263	LARGE-GAIN	FOCAL	2	"CCDC96,TADA2B"
TCGA.AM.5820	4	7418016	7482621	47	0.8135	LARGE-GAIN	FOCAL	2	"PSAPL1,SORCS2"
TCGA.AM.5820	4	7514903	7543438	12	0.8899	LARGE-GAIN	FOCAL	1	SORCS2
TCGA.AA.A00N.01A	4	7820763	7870307	5	1.1513	LARGE-GAIN	FOCAL	1	AFAP1
TCGA.AM.5820	4	8023483	8084793	26	0.7741	LARGE-GAIN	FOCAL	1	ABLIM2
TCGA.AM.5820	4	8193402	8242498	22	0.8684	LARGE-GAIN	FOCAL	1	SH3TC1
TCGA.A6.3808.01A	4	9827969	9943487	7	0.8103	LARGE-GAIN	FOCAL	1	SLC2A9
TCGA.AA.A00N.01A	4	9827969	9982164	8	1.3207	LARGE-GAIN	FOCAL	1	SLC2A9
TCGA.A6.3808.01A	4	10509522	13621515	52	0.8407	LARGE-GAIN	FOCAL	5	"BOD1L1,CLNK,HS3ST1,NKX3-2,RAB28"
TCGA.AG.3906.01A	4	13612540	15008918	6	0.714	LARGE-GAIN	FOCAL	2	"BOD1L1,CPEB2"
TCGA.AA.A00N.01A	4	15053990	15591139	41	0.8626	LARGE-GAIN	FOCAL	3	"C1QTNF7,CC2D2A,CPEB2"
TCGA.AA.A010.01A	4	15516303	15534775	6	1.1958	LARGE-GAIN	FOCAL	1	CC2D2A
TCGA.CK.5914.01A	4	16504235	16510117	3	1.6805	LARGE-GAIN	FOCAL	1	LDB2
TCGA.AA.3509.01A	4	17825243	20487762	24	1.2489	LARGE-GAIN	FOCAL	3	"LCORL,NCAPG,SLIT2"
TCGA.AZ.4684.01A	4	17838735	20487762	18	0.9804	LARGE-GAIN	FOCAL	3	"LCORL,NCAPG,SLIT2"
TCGA.DM.A28M.01A	4	17841282	20270412	16	0.8748	LARGE-GAIN	FOCAL	3	"LCORL,NCAPG,SLIT2"
TCGA.DY.A1DC	4	19092932	19136894	14	0.8198	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	19179310	19242238	11	0.9991	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	4	25013920	25028427	5	1.1145	LARGE-GAIN	FOCAL	1	LGI2
TCGA.AG.3906.01A	4	25253915	25262113	5	1.316	LARGE-GAIN	FOCAL	1	PI4K2B
TCGA.AA.A00N.01A	4	25675880	25823571	18	0.7535	LARGE-GAIN	FOCAL	2	"SEL1L3,SLC34A2"
TCGA.F4.6704	4	25874057	26050046	90	0.7456	LARGE-GAIN	FOCAL	1	SMIM20
TCGA.CM.5862	4	26897057	28237579	469	0.8952	LARGE-GAIN	FOCAL	1	STIM2
TCGA.CK.5914.01A	4	31144063	36149975	18	0.7696	LARGE-GAIN	FOCAL	2	"ARAP2,PCDH7"
TCGA.AA.3509.01A	4	36126437	37440384	35	0.8139	LARGE-GAIN	FOCAL	3	"ARAP2,DTHD1,NWD2"
TCGA.AA.3815.01A	4	37839113	37841671	3	1.0221	LARGE-GAIN	FOCAL	1	PGM2
TCGA.AA.A010.01A	4	39891837	39918641	10	0.8544	LARGE-GAIN	FOCAL	1	PDS5A
TCGA.AA.A00N.01A	4	40244990	40355984	8	0.9755	LARGE-GAIN	FOCAL	2	"CHRNA9,RHOH"
TCGA.AA.A010.01A	4	40244990	40752693	13	0.9024	LARGE-GAIN	FOCAL	4	"CHRNA9,NSUN7,RBM47,RHOH"
TCGA.AA.A010.01A	4	41258969	41259584	2	1.56	LARGE-GAIN	FOCAL	1	UCHL1
TCGA.AG.3906.01A	4	41747812	41750335	3	1.8224	LARGE-GAIN	FOCAL	1	PHOX2B
TCGA.AA.A010.01A	4	41937426	42119515	30	0.7415	LARGE-GAIN	FOCAL	4	"BEND4,DCAF4L1,SLC30A9,TMEM33"
TCGA.AG.3591	4	42342347	43067709	318	0.8125	LARGE-GAIN	FOCAL	3	"ATP8A1,GRXCR1,SHISA3"
TCGA.DY.A1DC	4	42504704	42505720	3	1.5145	LARGE-GAIN	FOCAL	1	ATP8A1
TCGA.AA.A010.01A	4	42576604	42590212	7	1.0555	LARGE-GAIN	FOCAL	1	ATP8A1
TCGA.AA.A010.01A	4	44653505	44691271	11	0.824	LARGE-GAIN	FOCAL	2	"GUF1,YIPF7"
TCGA.AA.3509.01A	4	44653505	46979403	44	1.0749	LARGE-GAIN	FOCAL	7	"COX7B2,GABRA2,GABRA4,GABRG1,GNPDA2,GUF1,YIPF7"
TCGA.DM.A28M.01A	4	44680588	46099171	30	0.8453	LARGE-GAIN	FOCAL	3	"GABRG1,GNPDA2,GUF1"
TCGA.AZ.4684.01A	4	44682416	46979403	42	0.7294	LARGE-GAIN	FOCAL	6	"COX7B2,GABRA2,GABRA4,GABRG1,GNPDA2,GUF1"
TCGA.A6.2686	4	46708119	47824549	304	0.9566	LARGE-GAIN	FOCAL	6	"ATP10D,COMMD8,CORIN,COX7B2,GABRA4,GABRB1"
TCGA.AA.A00N.01A	4	47514546	47839839	43	0.8301	LARGE-GAIN	FOCAL	2	"ATP10D,CORIN"
TCGA.A6.2686	4	47828906	48178813	105	1.54	LARGE-GAIN	FOCAL	6	"CNGA1,CORIN,NFXL1,NIPAL1,TEC,TXK"
TCGA.AA.A00N.01A	4	48136101	48148282	6	0.927	LARGE-GAIN	FOCAL	2	"TEC,TXK"
TCGA.A6.2686	4	48189709	49063478	138	1.4555	LARGE-GAIN	FOCAL	8	"CWH43,FRYL,OCIAD1,OCIAD2,SLAIN2,SLC10A4,TEC,ZAR1"
TCGA.AA.A00N.01A	4	48546768	48636261	40	0.9394	LARGE-GAIN	FOCAL	1	FRYL
TCGA.AG.3902	4	53091751	53114853	10	0.8612	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	54280745	54852769	21	1.0032	LARGE-GAIN	FOCAL	2	"FIP1L1,LNX1"
TCGA.AA.A00N.01A	4	55138524	55960922	42	0.8005	LARGE-GAIN	FOCAL	3	"KDR,KIT,PDGFRA"
TCGA.AA.A02H.01A	4	55958732	55973864	13	0.9056	LARGE-GAIN	FOCAL	1	KDR
TCGA.AA.A00N.01A	4	56336841	56348888	5	0.9905	LARGE-GAIN	FOCAL	1	CLOCK
TCGA.AF.3911	4	56386370	56476112	24	0.8441	LARGE-GAIN	FOCAL	3	"CLOCK,NMU,PDCL2"
TCGA.AA.3861.01A	4	56446947	57340170	96	0.8165	LARGE-GAIN	FOCAL	9	"AASDH,CEP135,EXOC1,KIAA1211,NMU,PAICS,PDCL2,PPAT,SRP72"
TCGA.AA.A02H.01A	4	56736837	56762863	11	0.6987	LARGE-GAIN	FOCAL	1	EXOC1
TCGA.AA.A00N.01A	4	56744056	56762863	8	0.8073	LARGE-GAIN	FOCAL	1	EXOC1
TCGA.AG.3906.01A	4	57686633	57785898	4	0.9973	LARGE-GAIN	FOCAL	2	"REST,SPINK2"
TCGA.AA.A00N.01A	4	57872934	68488500	102	0.6823	LARGE-GAIN	FOCAL	8	"ADGRL3,CENPC,EPHA5,IGFBP7,POLR2B,STAP1,TECRL,UBA6"
TCGA.DY.A1DC	4	58750041	58796082	18	0.795	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	59725399	59827103	16	0.8066	LARGE-GAIN	FOCAL	0	None
TCGA.RU.A8FL	4	60402233	61084246	190	1.2763	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	61415480	61429371	11	0.9668	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	4	62897121	66233062	25	0.7033	LARGE-GAIN	FOCAL	3	"ADGRL3,EPHA5,TECRL"
TCGA.DY.A1DC	4	66188294	66197328	8	1.297	LARGE-GAIN	FOCAL	1	EPHA5
TCGA.DM.A28M.01A	4	68488500	68492031	5	1.5373	LARGE-GAIN	FOCAL	1	UBA6
TCGA.AA.3862.01A	4	69337163	70350885	54	0.8701	LARGE-GAIN	FOCAL	9	"TMPRSS11E,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7"
TCGA.CK.5914.01A	4	69403342	69816800	26	0.8743	LARGE-GAIN	FOCAL	4	"UGT2A3,UGT2B10,UGT2B15,UGT2B17"
TCGA.AA.A01C.01A	4	70066107	70160246	11	0.7056	LARGE-GAIN	FOCAL	2	"UGT2B11,UGT2B28"
TCGA.CK.5914.01A	4	70066107	70455108	19	1.028	LARGE-GAIN	FOCAL	5	"UGT2A1,UGT2A2,UGT2B11,UGT2B28,UGT2B4"
TCGA.AA.A00N.01A	4	70707664	70723170	7	1.2748	LARGE-GAIN	FOCAL	1	SULT1E1
TCGA.RU.A8FL	4	71381596	71710944	56	0.9929	LARGE-GAIN	FOCAL	7	"AMBN,AMTN,ENAM,GRSF1,JCHAIN,RUFY3,UTP3"
TCGA.AG.A014.01A	4	71689974	71691792	3	1.3316	LARGE-GAIN	FOCAL	1	GRSF1
TCGA.RU.A8FL	4	71716014	72126441	82	1.2143	LARGE-GAIN	FOCAL	3	"DCK,MOB1B,SLC4A4"
TCGA.AA.A00N.01A	4	71888051	73280485	66	0.7052	LARGE-GAIN	FOCAL	5	"ADAMTS3,DCK,GC,NPFFR2,SLC4A4"
TCGA.RU.A8FL	4	72127320	74278704	532	0.9628	LARGE-GAIN	FOCAL	7	"ADAMTS3,ALB,ANKRD17,COX18,GC,NPFFR2,SLC4A4"
TCGA.AA.A010.01A	4	73280485	73963738	20	0.687	LARGE-GAIN	FOCAL	3	"ADAMTS3,ANKRD17,COX18"
TCGA.AA.A00N.01A	4	73956347	74123961	30	0.7605	LARGE-GAIN	FOCAL	1	ANKRD17
TCGA.AA.A00N.01A	4	74262757	74275992	7	1.4672	LARGE-GAIN	FOCAL	1	ALB
TCGA.AA.A00N.01A	4	74277671	74318070	20	0.9787	LARGE-GAIN	FOCAL	2	"AFP,ALB"
TCGA.AA.A010.01A	4	74481531	74964270	27	0.9291	LARGE-GAIN	FOCAL	10	"CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,PF4,PF4V1,PPBP,RASSF6"
TCGA.AA.A00N.01A	4	74486086	74702429	6	1.1805	LARGE-GAIN	FOCAL	3	"CXCL6,CXCL8,RASSF6"
TCGA.AA.A00N.01A	4	76649940	76797420	28	0.6942	LARGE-GAIN	FOCAL	2	"PPEF2,USO1"
TCGA.AA.3861.01A	4	76721788	76781782	10	1.9737	LARGE-GAIN	FOCAL	2	"PPEF2,USO1"
TCGA.AA.A010.01A	4	76781782	76817355	14	0.915	LARGE-GAIN	FOCAL	1	PPEF2
TCGA.AA.A00N.01A	4	78526961	79440433	92	1.0287	LARGE-GAIN	FOCAL	4	"CNOT6L,CXCL13,FRAS1,MRPL1"
TCGA.CK.5914.01A	4	79385548	79440433	19	0.9021	LARGE-GAIN	FOCAL	1	FRAS1
TCGA.AA.A00N.01A	4	79503334	79831717	24	0.8151	LARGE-GAIN	FOCAL	2	"ANXA3,BMP2K"
TCGA.AA.3509.01A	4	79754719	79808294	12	1.3966	LARGE-GAIN	FOCAL	1	BMP2K
TCGA.DY.A1DC	4	80791036	80845011	18	0.6825	LARGE-GAIN	FOCAL	1	ANTXR2
TCGA.AA.3509.01A	4	82088247	82125719	5	1.4293	LARGE-GAIN	FOCAL	1	PRKG2
TCGA.AG.A00C.01A	4	83347585	83349132	3	0.8099	LARGE-GAIN	FOCAL	1	HNRNPDL
TCGA.DY.A1DC	4	85174675	85191864	12	0.9431	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	4	85593970	85664802	32	0.7156	LARGE-GAIN	FOCAL	1	WDFY3
TCGA.AA.A00N.01A	4	85654504	86921583	49	0.903	LARGE-GAIN	FOCAL	2	"ARHGAP24,WDFY3"
TCGA.AA.A010.01A	4	85715698	85724396	5	0.7578	LARGE-GAIN	FOCAL	1	WDFY3
TCGA.AA.A00N.01A	4	86985397	87769915	59	0.8739	LARGE-GAIN	FOCAL	3	"MAPK10,PTPN13,SLC10A6"
TCGA.AG.A00C.01A	4	87808864	87812600	3	1.0103	LARGE-GAIN	FOCAL	1	C4orf36
TCGA.AA.3862.01A	4	88420603	88731716	15	1.8773	LARGE-GAIN	FOCAL	4	"DMP1,DSPP,IBSP,SPARCL1"
TCGA.AA.3861.01A	4	88533220	88537574	6	3.349	LARGE-GAIN	FOCAL	1	DSPP
TCGA.DY.A1DC	4	88700219	88723209	19	0.7694	LARGE-GAIN	FOCAL	1	IBSP
TCGA.AG.A01W.01A	4	88753945	88756570	6	1.2978	LARGE-GAIN	FOCAL	1	MEPE
TCGA.AA.A00N.01A	4	88957320	89052913	26	0.7096	LARGE-GAIN	FOCAL	2	"ABCG2,PKD2"
TCGA.DY.A1DC	4	90833371	90837943	4	1.3901	LARGE-GAIN	FOCAL	1	MMRN1
TCGA.AA.A01K.01A	4	95194726	95197452	3	2.5809	LARGE-GAIN	FOCAL	1	SMARCAD1
TCGA.DY.A1DC	4	96789398	96799839	7	1.1787	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	97931762	97952234	9	1.0687	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	100009754	100242388	33	0.7223	LARGE-GAIN	FOCAL	5	"ADH1A,ADH1B,ADH4,ADH5,ADH6"
TCGA.AA.A00N.01A	4	100334220	100789209	49	0.7703	LARGE-GAIN	FOCAL	5	"ADH7,C4orf17,DAPP1,MTTP,TRMT10A"
TCGA.AG.3906.01A	4	100844158	100870761	7	0.7533	LARGE-GAIN	FOCAL	2	"DNAJB14,H2AFZ"
TCGA.AA.A00N.01A	4	101331409	102994784	40	0.8636	LARGE-GAIN	FOCAL	3	"BANK1,EMCN,PPP3CA"
TCGA.DY.A1DC	4	102849218	102856784	6	1.4766	LARGE-GAIN	FOCAL	1	BANK1
TCGA.DM.A1HB	4	103181112	103236000	28	0.7048	LARGE-GAIN	FOCAL	1	SLC39A8
TCGA.AA.A00N.01A	4	103488113	103681833	36	0.9526	LARGE-GAIN	FOCAL	2	"MANBA,NFKB1"
TCGA.CK.5914.01A	4	103822452	103870374	7	0.8569	LARGE-GAIN	FOCAL	1	SLC9B1
TCGA.AA.3861.01A	4	103826638	103870374	6	3.6513	LARGE-GAIN	FOCAL	1	SLC9B1
TCGA.AA.3862.01A	4	103826638	103870374	5	3.5004	LARGE-GAIN	FOCAL	1	SLC9B1
TCGA.AA.A00N.01A	4	104037686	104069961	18	1.1151	LARGE-GAIN	FOCAL	1	CENPE
TCGA.DM.A28M.01A	4	104115320	104117865	5	1.4622	LARGE-GAIN	FOCAL	1	CENPE
TCGA.AA.A00N.01A	4	106155079	106290807	15	1.2892	LARGE-GAIN	FOCAL	2	"PPA2,TET2"
TCGA.DM.A28M.01A	4	107151461	107154690	4	1.263	LARGE-GAIN	FOCAL	1	TBCK
TCGA.AA.A00N.01A	4	107257975	108578005	12	0.9736	LARGE-GAIN	FOCAL	4	"AIMP1,DKK2,GIMD1,PAPSS1"
TCGA.AA.A00N.01A	4	110670326	111482510	70	0.7498	LARGE-GAIN	FOCAL	7	"CFI,EGF,ELOVL6,ENPEP,GAR1,LRIT3,RRH"
TCGA.DY.A1DC	4	111727484	111738904	11	0.8564	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	111867425	111952823	26	0.6905	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	112558291	112561856	5	1.0722	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	4	113186108	113189303	3	2.0224	LARGE-GAIN	FOCAL	1	AP1AR
TCGA.DM.A28M.01A	4	113186108	113189303	4	1.8177	LARGE-GAIN	FOCAL	1	AP1AR
TCGA.AA.A00N.01A	4	113332971	113362076	13	0.8079	LARGE-GAIN	FOCAL	1	ALPK1
TCGA.AA.A010.01A	4	114208714	114238816	7	1.0252	LARGE-GAIN	FOCAL	1	ANK2
TCGA.DY.A1DC	4	117859042	117869609	17	1.092	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	4	120426977	120474746	9	1.5742	LARGE-GAIN	FOCAL	1	PDE5A
TCGA.AZ.4684.01A	4	120426977	120474746	9	1.0598	LARGE-GAIN	FOCAL	1	PDE5A
TCGA.AA.A010.01A	4	120981231	120987752	5	1.2711	LARGE-GAIN	FOCAL	1	MAD2L1
TCGA.AA.A010.01A	4	122075669	122301532	11	0.8071	LARGE-GAIN	FOCAL	2	"QRFPR,TNIP3"
TCGA.AG.3906.01A	4	122593648	122607389	7	0.719	LARGE-GAIN	FOCAL	1	ANXA5
TCGA.AA.A010.01A	4	122739205	122744521	7	1.2709	LARGE-GAIN	FOCAL	1	CCNA2
TCGA.AA.A00N.01A	4	123107170	123131992	14	0.7828	LARGE-GAIN	FOCAL	1	KIAA1109
TCGA.AA.A00N.01A	4	123140448	123155916	7	1.4946	LARGE-GAIN	FOCAL	1	KIAA1109
TCGA.AA.A010.01A	4	123145606	123161109	8	0.854	LARGE-GAIN	FOCAL	1	KIAA1109
TCGA.AA.A00N.01A	4	123159196	123239255	38	0.9071	LARGE-GAIN	FOCAL	1	KIAA1109
TCGA.AA.3509.01A	4	123166126	123377227	70	0.9048	LARGE-GAIN	FOCAL	3	"ADAD1,IL2,KIAA1109"
TCGA.AA.A017.01A	4	123225916	123239255	9	1.1058	LARGE-GAIN	FOCAL	1	KIAA1109
TCGA.AA.A017.01A	4	123270615	123277729	6	1.0253	LARGE-GAIN	FOCAL	1	KIAA1109
TCGA.AA.A017.01A	4	123372860	123536810	5	0.9113	LARGE-GAIN	FOCAL	2	"IL2,IL21"
TCGA.DY.A1DC	4	125324956	125333181	7	1.5193	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	126319899	126411606	18	1.2939	LARGE-GAIN	FOCAL	1	FAT4
TCGA.DY.A1DC	4	126429270	126439776	9	1.3068	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	129767483	130032832	34	0.7994	LARGE-GAIN	FOCAL	3	"C4orf33,JADE1,SCLT1"
TCGA.DM.A1HB	4	130155314	130165096	10	0.9966	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	130740403	130758889	8	1.4301	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	4	135309092	135314679	4	1.0488	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	4	135909798	135920028	8	1.0714	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	137899521	137938364	15	0.799	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	138442133	139981436	20	0.8591	LARGE-GAIN	FOCAL	4	"CCRN4L,ELF2,PCDH18,SLC7A11"
TCGA.AA.A010.01A	4	140201184	140222861	5	1.8071	LARGE-GAIN	FOCAL	3	"MGARP,NAA15,NDUFC1"
TCGA.AA.A00N.01A	4	141590049	142053489	16	0.6826	LARGE-GAIN	FOCAL	2	"RNF150,TBC1D9"
TCGA.A6.6780	4	141735596	141761652	6	0.9522	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	142640522	143352291	29	0.8199	LARGE-GAIN	FOCAL	2	"IL15,INPP4B"
TCGA.AA.A00N.01A	4	144134683	144390162	13	0.7886	LARGE-GAIN	FOCAL	2	"GAB1,USP38"
TCGA.AA.3861.01A	4	144797856	144940321	8	2.3813	LARGE-GAIN	FOCAL	2	"GYPB,GYPE"
TCGA.AA.A00N.01A	4	144917353	145061692	12	0.7243	LARGE-GAIN	FOCAL	2	"GYPA,GYPB"
TCGA.AA.A00N.01A	4	146686089	146823326	12	0.8582	LARGE-GAIN	FOCAL	1	ZNF827
TCGA.DM.A1HB	4	149762447	149773641	9	1.1192	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	4	151357839	151727406	14	0.7464	LARGE-GAIN	FOCAL	2	"LRBA,MAB21L2"
TCGA.CK.5914.01A	4	151520107	151749315	9	0.7133	LARGE-GAIN	FOCAL	1	LRBA
TCGA.AZ.4684.01A	4	151817506	151836708	9	0.7722	LARGE-GAIN	FOCAL	1	LRBA
TCGA.AU.3779	4	152141398	152221948	19	0.8277	LARGE-GAIN	FOCAL	2	"PRSS48,SH3D19"
TCGA.AA.A024.01A	4	152592287	152593877	2	2.1607	LARGE-GAIN	FOCAL	1	GATB
TCGA.CK.5914.01A	4	152681960	153549619	15	0.7901	LARGE-GAIN	FOCAL	3	"FBXW7,GATB,TMEM154"
TCGA.DM.A1HB	4	153179207	153216319	7	1.0554	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	153895795	154216418	7	0.8538	LARGE-GAIN	FOCAL	2	"FHDC1,TRIM2"
TCGA.AA.A00N.01A	4	154476898	154557411	31	0.7446	LARGE-GAIN	FOCAL	1	KIAA0922
TCGA.AA.A00N.01A	4	154709449	155511715	62	0.7102	LARGE-GAIN	FOCAL	5	"DCHS2,FGA,FGB,PLRG1,SFRP2"
TCGA.DY.A1DC	4	161218093	161231636	14	0.7921	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	161239692	161248504	3	1.0934	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	161952227	161955449	7	1.164	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	161996959	162003218	6	1.0789	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	163358336	163362278	4	1.3369	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	163484843	163493091	10	0.8921	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	164570580	164572107	6	1.1427	LARGE-GAIN	FOCAL	1	1-Mar
TCGA.AA.A00N.01A	4	166321754	169294780	91	0.8033	LARGE-GAIN	FOCAL	6	"ANXA10,CPE,DDX60,DDX60L,SPOCK3,TLL1"
TCGA.CK.5914.01A	4	169138033	169173613	12	0.8848	LARGE-GAIN	FOCAL	1	DDX60
TCGA.AA.A010.01A	4	169931052	170051158	8	0.9639	LARGE-GAIN	FOCAL	2	"CBR4,SH3RF1"
TCGA.CK.5914.01A	4	170043209	170077508	5	0.9493	LARGE-GAIN	FOCAL	1	SH3RF1
TCGA.AA.A00N.01A	4	170625107	170652817	7	0.8201	LARGE-GAIN	FOCAL	2	"C4orf27,CLCN3"
TCGA.AG.A01W.01A	4	171246076	172972257	3	1.0609	LARGE-GAIN	FOCAL	1	GALNTL6
TCGA.DY.A1DC	4	171640682	171659812	12	0.8122	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	173150760	174225095	19	0.7162	LARGE-GAIN	FOCAL	2	"GALNT7,GALNTL6"
TCGA.AG.3906.01A	4	174294499	174449889	7	0.8036	LARGE-GAIN	FOCAL	3	"HAND2,SAP30,SCRG1"
TCGA.AA.A00N.01A	4	183574872	183635198	8	1.42	LARGE-GAIN	FOCAL	1	TENM3
TCGA.AA.A010.01A	4	184210504	184365904	5	1.2114	LARGE-GAIN	FOCAL	4	"CDKN2AIP,CLDN22,CLDN24,WWC2"
TCGA.AA.A017.01A	4	184612419	184618602	6	0.8431	LARGE-GAIN	FOCAL	1	TRAPPC11
TCGA.AA.A010.01A	4	184827897	185350084	21	0.7753	LARGE-GAIN	FOCAL	3	"ENPP6,IRF2,STOX2"
TCGA.AA.A00N.01A	4	184930304	185320017	14	1.011	LARGE-GAIN	FOCAL	3	"ENPP6,IRF2,STOX2"
TCGA.AG.A01W.01A	4	186301474	186304925	4	0.8804	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	4	186379270	186380227	3	0.9882	LARGE-GAIN	FOCAL	1	CCDC110
TCGA.AZ.4684.01A	4	186379270	186380227	3	1.1137	LARGE-GAIN	FOCAL	1	CCDC110
TCGA.AA.A010.01A	4	186456446	186611644	27	0.6909	LARGE-GAIN	FOCAL	2	"PDLIM3,SORBS2"
TCGA.AG.A00Y.01A	4	189060662	189067925	5	2.2009	LARGE-GAIN	FOCAL	1	TRIML1
TCGA.AA.3861.01A	4	190864293	190947494	9	1.6457	LARGE-GAIN	FOCAL	2	"FRG1,FRG2"
TCGA.AA.3862.01A	5	216794	304213	17	2.1489	LARGE-GAIN	FOCAL	3	"CCDC127,PDCD6,SDHA"
TCGA.AA.3861.01A	5	223549	306676	17	1.6389	LARGE-GAIN	FOCAL	3	"AHRR,PDCD6,SDHA"
TCGA.AG.A015.01A	5	240426	256415	4	0.9646	LARGE-GAIN	FOCAL	1	SDHA
TCGA.AG.A015.01A	5	427722	433926	4	1.0621	LARGE-GAIN	FOCAL	1	AHRR
TCGA.AG.A01W.01A	5	529076	538208	10	0.7267	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.5403	5	806224	852565	3	0.9855	LARGE-GAIN	FOCAL	1	ZDHHC11
TCGA.AH.6549.01A	5	1081680	1212400	12	0.9979	LARGE-GAIN	FOCAL	2	"SLC12A7,SLC6A19"
TCGA.AG.A015.01A	5	1318427	1344414	10	0.9908	LARGE-GAIN	FOCAL	1	CLPTM1L
TCGA.AG.A01W.01A	5	1346421	1394755	15	0.9907	LARGE-GAIN	FOCAL	1	SLC6A3
TCGA.AA.A00K.01A	5	1409094	1414759	4	3.342	LARGE-GAIN	FOCAL	1	SLC6A3
TCGA.AM.5820	5	1854256	1901204	21	0.9069	LARGE-GAIN	FOCAL	1	IRX4
TCGA.EI.6883	5	3585794	3589889	3	1.3792	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	5	5182193	5319095	19	0.7081	LARGE-GAIN	FOCAL	1	ADAMTS16
TCGA.AG.A020	5	6604951	6604969	2	1.4234	LARGE-GAIN	FOCAL	1	NSUN2
TCGA.AA.A00N.01A	5	7520824	7804657	21	0.9599	LARGE-GAIN	FOCAL	1	ADCY2
TCGA.AG.A00C.01A	5	7835478	7867472	8	0.6889	LARGE-GAIN	FOCAL	2	"C5orf49,FASTKD3"
TCGA.AA.A00N.01A	5	9051964	9197230	11	1.9358	LARGE-GAIN	FOCAL	1	SEMA5A
TCGA.AA.A00N.01A	5	9202050	10227541	9	0.9363	LARGE-GAIN	FOCAL	3	"FAM173B,SEMA5A,TAS2R1"
TCGA.AA.A00N.01A	5	10681120	13793577	56	0.9582	LARGE-GAIN	FOCAL	3	"CTNND2,DAP,DNAH5"
TCGA.AA.3872	5	13611630	13626494	5	0.6914	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	5	13807649	13814667	5	0.7718	LARGE-GAIN	FOCAL	1	DNAH5
TCGA.AA.A00N.01A	5	13829588	14369475	54	0.8339	LARGE-GAIN	FOCAL	2	"DNAH5,TRIO"
TCGA.DM.A28M.01A	5	13911448	13917230	5	1.5365	LARGE-GAIN	FOCAL	1	DNAH5
TCGA.AA.3509.01A	5	13913825	13916420	3	1.5873	LARGE-GAIN	FOCAL	1	DNAH5
TCGA.AZ.4684.01A	5	13913825	13916420	3	1.6481	LARGE-GAIN	FOCAL	1	DNAH5
TCGA.AA.A010.01A	5	14286968	14406632	29	0.8019	LARGE-GAIN	FOCAL	1	TRIO
TCGA.AA.A00N.01A	5	14405936	14461087	4	0.8276	LARGE-GAIN	FOCAL	1	TRIO
TCGA.AG.3906.01A	5	14471385	14498191	14	1.0783	LARGE-GAIN	FOCAL	1	TRIO
TCGA.AZ.4684.01A	5	16477724	16483406	5	0.9247	LARGE-GAIN	FOCAL	1	FAM134B
TCGA.AG.3909.01A	5	16565788	16694431	17	0.7296	LARGE-GAIN	FOCAL	2	"FAM134B,MYO10"
TCGA.AA.A00N.01A	5	19473293	31532441	97	0.9564	LARGE-GAIN	FOCAL	8	"C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,PRDM9"
TCGA.AG.A026	5	19902952	20464726	130	0.7314	LARGE-GAIN	FOCAL	1	CDH18
TCGA.AA.A00Q.01A	5	23522731	23527350	4	0.7582	LARGE-GAIN	FOCAL	1	PRDM9
TCGA.AZ.4684.01A	5	24537447	31429516	32	0.6782	LARGE-GAIN	FOCAL	4	"CDH10,CDH6,CDH9,DROSHA"
TCGA.CM.6170	5	24610221	24621421	3	1.0638	LARGE-GAIN	FOCAL	1	CDH10
TCGA.AA.3966	5	26919923	28673358	366	0.8603	LARGE-GAIN	FOCAL	1	CDH9
TCGA.AA.3966	5	28678321	32330912	1296	1.2383	LARGE-GAIN	FOCAL	6	"C5orf22,CDH6,DROSHA,GOLPH3,MTMR12,PDZD2"
TCGA.AG.3909.01A	5	31799308	32010436	5	0.8741	LARGE-GAIN	FOCAL	1	PDZD2
TCGA.AA.3972	5	31833815	31842828	4	1.2596	LARGE-GAIN	FOCAL	1	PDZD2
TCGA.AZ.4684.01A	5	32385587	32387606	2	1.7781	LARGE-GAIN	FOCAL	1	ZFR
TCGA.AA.3509.01A	5	32385587	32388523	3	1.5223	LARGE-GAIN	FOCAL	1	ZFR
TCGA.CK.5914.01A	5	33549271	33661974	16	0.8552	LARGE-GAIN	FOCAL	1	ADAMTS12
TCGA.AA.A00N.01A	5	33549271	33751467	19	1.4117	LARGE-GAIN	FOCAL	1	ADAMTS12
TCGA.AG.3906.01A	5	34922288	34945801	13	1.0668	LARGE-GAIN	FOCAL	2	"BRIX1,DNAJC21"
TCGA.AA.A00N.01A	5	34953978	36122940	96	0.6882	LARGE-GAIN	FOCAL	9	"AGXT2,CAPSL,DNAJC21,IL7R,LMBRD2,PRLR,SPEF2,UGT3A1,UGT3A2"
TCGA.AG.3909.01A	5	35014045	35084520	16	0.7147	LARGE-GAIN	FOCAL	2	"AGXT2,PRLR"
TCGA.AA.A010.01A	5	35909931	36039547	13	0.8151	LARGE-GAIN	FOCAL	3	"CAPSL,UGT3A1,UGT3A2"
TCGA.DM.A28M.01A	5	36104101	36111217	5	1.3842	LARGE-GAIN	FOCAL	1	LMBRD2
TCGA.AA.A010.01A	5	36136359	36152852	8	0.8926	LARGE-GAIN	FOCAL	2	"LMBRD2,SKP2"
TCGA.DM.A28M.01A	5	36255532	36257504	3	1.4746	LARGE-GAIN	FOCAL	1	RANBP3L
TCGA.AA.A00N.01A	5	36953739	36995697	11	0.7	LARGE-GAIN	FOCAL	1	NIPBL
TCGA.AA.3509.01A	5	36970951	37008678	14	1.4689	LARGE-GAIN	FOCAL	1	NIPBL
TCGA.AZ.4684.01A	5	36970951	37008678	14	1.3592	LARGE-GAIN	FOCAL	1	NIPBL
TCGA.AA.A00N.01A	5	37052431	37107662	7	1.1546	LARGE-GAIN	FOCAL	2	"C5orf42,NIPBL"
TCGA.AA.3854	5	37604855	38801314	524	1.2514	LARGE-GAIN	FOCAL	5	"EGFLAM,GDNF,GDNF-AS1,LIFR,WDR70"
TCGA.AA.3854	5	38804070	38806479	3	2.233	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00F.01A	5	38869102	38886124	6	0.7788	LARGE-GAIN	FOCAL	1	OSMR
TCGA.AA.3509.01A	5	38944516	39315835	54	0.8007	LARGE-GAIN	FOCAL	3	"C9,FYB,RICTOR"
TCGA.AZ.4684.01A	5	38944516	39315835	54	0.7712	LARGE-GAIN	FOCAL	3	"C9,FYB,RICTOR"
TCGA.AA.A00F.01A	5	39285227	39342141	10	0.7683	LARGE-GAIN	FOCAL	1	C9
TCGA.AA.A00N.01A	5	40798113	41850085	100	0.8482	LARGE-GAIN	FOCAL	8	"C6,C7,CARD6,MROH2B,OXCT1,PLCXD3,PRKAA1,RPL37"
TCGA.A6.3808.01A	5	40928633	42713495	113	0.8888	LARGE-GAIN	FOCAL	8	"C5orf51,C6,C7,FBXO4,GHR,MROH2B,OXCT1,PLCXD3"
TCGA.AA.3509.01A	5	41907790	41917111	5	1.6411	LARGE-GAIN	FOCAL	1	C5orf51
TCGA.AA.A00N.01A	5	42565932	42810840	23	0.756	LARGE-GAIN	FOCAL	3	"CCDC152,GHR,SEPP1"
TCGA.AA.3509.01A	5	43704339	45695720	17	0.6984	LARGE-GAIN	FOCAL	4	"FGF10,HCN1,MRPS30,NNT"
TCGA.AA.A010.01A	5	44388433	45267144	8	0.978	LARGE-GAIN	FOCAL	3	"FGF10,HCN1,MRPS30"
TCGA.AZ.4684.01A	5	44811073	49707029	19	0.8047	LARGE-GAIN	FOCAL	3	"EMB,HCN1,MRPS30"
TCGA.AA.3854	5	44984161	45538383	32	1.2908	LARGE-GAIN	FOCAL	1	HCN1
TCGA.AA.3854	5	45579691	46383334	55	1.0032	LARGE-GAIN	FOCAL	1	HCN1
TCGA.AA.3867	5	45939673	46061984	2	1.1925	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	5	49695019	49701522	5	2.213	LARGE-GAIN	FOCAL	1	EMB
TCGA.D5.6535	5	49758907	50066048	38	1.0531	LARGE-GAIN	FOCAL	1	PARP8
TCGA.AA.A00N.01A	5	50090669	50137783	14	0.9233	LARGE-GAIN	FOCAL	1	PARP8
TCGA.DY.A1DC	5	51767363	51768549	3	1.4853	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.6608	5	52032806	52472132	240	1.0472	LARGE-GAIN	FOCAL	4	"ITGA1,ITGA2,MOCS2,PELO"
TCGA.AA.A00N.01A	5	52145147	52351321	34	0.742	LARGE-GAIN	FOCAL	2	"ITGA1,ITGA2"
TCGA.AA.A017.01A	5	52322531	52374550	22	0.6918	LARGE-GAIN	FOCAL	1	ITGA2
TCGA.CK.5914.01A	5	52337893	52377401	23	0.9926	LARGE-GAIN	FOCAL	1	ITGA2
TCGA.AA.A01C.01A	5	52351321	52374550	16	1.0537	LARGE-GAIN	FOCAL	1	ITGA2
TCGA.AA.A010.01A	5	52396194	52405473	6	0.9166	LARGE-GAIN	FOCAL	1	MOCS2
TCGA.AG.3906.01A	5	52778663	52781763	6	0.9808	LARGE-GAIN	FOCAL	1	FST
TCGA.AZ.6608	5	53288200	53472155	79	0.9162	LARGE-GAIN	FOCAL	1	ARL15
TCGA.AA.3939.01A	5	53751591	53816413	4	0.8382	LARGE-GAIN	FOCAL	2	"HSPB3,SNX18"
TCGA.AA.A010.01A	5	54275108	54329555	8	0.7023	LARGE-GAIN	FOCAL	2	"ESM1,GZMK"
TCGA.D5.6927	5	54302004	54316877	3	1.0028	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	5	54592011	54603852	5	1.3768	LARGE-GAIN	FOCAL	2	"DHX29,SKIV2L2"
TCGA.AA.A010.01A	5	55168067	55236883	14	0.7377	LARGE-GAIN	FOCAL	2	"IL31RA,IL6ST"
TCGA.DC.6155	5	55705456	55735499	15	0.8553	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	5	55936921	55964264	12	0.8566	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	5	56229023	56246369	6	0.7589	LARGE-GAIN	FOCAL	1	MIER3
TCGA.AA.A00N.01A	5	56509898	56778012	13	0.7375	LARGE-GAIN	FOCAL	2	"ACTBL2,GPBP1"
TCGA.DY.A1DC	5	57291995	57342151	19	0.7123	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.6608	5	60843705	61847072	349	0.9875	LARGE-GAIN	FOCAL	4	"C5orf64,DIMT1,IPO11,KIF2A"
TCGA.AA.A010.01A	5	61676908	61762921	17	0.6822	LARGE-GAIN	FOCAL	3	"DIMT1,IPO11,KIF2A"
TCGA.AA.A00N.01A	5	61747516	61783556	9	0.7604	LARGE-GAIN	FOCAL	1	IPO11
TCGA.DM.A28M.01A	5	64863293	64865697	3	2.1525	LARGE-GAIN	FOCAL	1	PPWD1
TCGA.AA.A010.01A	5	68418978	68680576	57	0.7555	LARGE-GAIN	FOCAL	9	"AK6,CCDC125,CCNB1,CDK7,CENPH,MRPS36,RAD17,SLC30A5,TAF9"
TCGA.AG.A008.01A	5	69716046	70351131	10	0.6989	LARGE-GAIN	FOCAL	6	"GTF2H2,NAIP,SERF1A,SERF1B,SMN1,SMN2"
TCGA.CK.5914.01A	5	69723385	69733310	4	1.2315	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3939.01A	5	70355895	70405019	7	1.0067	LARGE-GAIN	FOCAL	1	GTF2H2
TCGA.AG.3906.01A	5	70813121	70837881	9	0.8727	LARGE-GAIN	FOCAL	1	BDP1
TCGA.A6.3808.01A	5	70927891	71617959	30	1.2854	LARGE-GAIN	FOCAL	5	"CARTPT,MAP1B,MCCC2,MRPS27,PTCD2"
TCGA.CK.5914.01A	5	71499343	71533794	9	0.7645	LARGE-GAIN	FOCAL	2	"MAP1B,MRPS27"
TCGA.AA.A01C.01A	5	71519468	71533794	6	0.8527	LARGE-GAIN	FOCAL	1	MRPS27
TCGA.AA.A010.01A	5	71591288	72112476	18	0.7283	LARGE-GAIN	FOCAL	4	"MRPS27,PTCD2,TNPO1,ZNF366"
TCGA.G4.6315	5	71847009	71849496	4	0.8892	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	5	72147028	72168430	5	0.7617	LARGE-GAIN	FOCAL	1	TNPO1
TCGA.AA.3509.01A	5	72873634	72875685	5	1.4481	LARGE-GAIN	FOCAL	1	UTP15
TCGA.AA.A00N.01A	5	72980594	73142045	11	1.3059	LARGE-GAIN	FOCAL	1	ARHGEF28
TCGA.AA.A010.01A	5	73178280	74000992	21	0.9108	LARGE-GAIN	FOCAL	3	"ARHGEF28,ENC1,HEXB"
TCGA.AA.3509.01A	5	74034096	74056691	11	1.1623	LARGE-GAIN	FOCAL	1	GFM2
TCGA.AA.A010.01A	5	74063090	74130242	14	0.7402	LARGE-GAIN	FOCAL	3	"FAM169A,GFM2,NSA2"
TCGA.DY.A1DC	5	75255205	75291816	11	0.9935	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	5	75886221	75969225	20	0.8573	LARGE-GAIN	FOCAL	2	"F2RL2,IQGAP2"
TCGA.CK.5914.01A	5	79026267	79058837	11	0.7302	LARGE-GAIN	FOCAL	1	CMYA5
TCGA.AA.3930.01A	5	79924909	79933665	3	0.897	LARGE-GAIN	FOCAL	1	DHFR
TCGA.AA.A00N.01A	5	81605900	87492046	81	0.8825	LARGE-GAIN	FOCAL	10	"ATP6AP1L,CCNH,COX7C,EDIL3,HAPLN1,RASA1,TMEM161B,TMEM167A,VCAN,XRCC4"
TCGA.DY.A1DC	5	84196554	84214275	5	1.0025	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	5	86627118	86690795	26	0.702	LARGE-GAIN	FOCAL	2	"CCNH,RASA1"
TCGA.AA.3509.01A	5	86642428	86667882	7	1.9069	LARGE-GAIN	FOCAL	1	RASA1
TCGA.AZ.4684.01A	5	86642428	86667882	7	1.8857	LARGE-GAIN	FOCAL	1	RASA1
TCGA.A6.6653	5	87293670	87313536	5	0.7151	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	5	87524217	88119481	14	0.7365	LARGE-GAIN	FOCAL	2	"MEF2C,TMEM161B"
TCGA.AA.A00N.01A	5	87524217	90119195	103	0.7187	LARGE-GAIN	FOCAL	7	"ADGRV1,CETN3,LYSMD3,MBLAC2,MEF2C,POLR3G,TMEM161B"
TCGA.AA.A00N.01A	5	90261180	90459560	7	0.9912	LARGE-GAIN	FOCAL	1	ADGRV1
TCGA.AG.3906.01A	5	90667169	92929251	10	0.7897	LARGE-GAIN	FOCAL	2	"ARRDC3,NR2F1"
TCGA.EI.6514	5	91127170	91130057	4	1.4873	LARGE-GAIN	FOCAL	0	None
TCGA.NH.A8F8	5	93065682	93120617	3	0.84	LARGE-GAIN	FOCAL	2	"FAM172A,POU5F2"
TCGA.AA.A00N.01A	5	93076251	93905105	30	0.8719	LARGE-GAIN	FOCAL	3	"FAM172A,KIAA0825,POU5F2"
TCGA.AA.A00N.01A	5	93978927	94851995	68	0.717	LARGE-GAIN	FOCAL	4	"ANKRD32,FAM81B,MCTP1,TTC37"
TCGA.DY.A1DC	5	94195463	94213393	16	0.9051	LARGE-GAIN	FOCAL	1	MCTP1
TCGA.AA.A017.01A	5	96253114	96342093	12	0.7493	LARGE-GAIN	FOCAL	2	"ERAP2,LNPEP"
TCGA.EI.6509	5	97048465	97116590	22	0.8797	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3494	5	97050099	97099319	19	0.7267	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	5	98508955	98566595	10	1.1157	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	5	99459597	99538337	15	1.0387	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	5	100250268	100264349	3	1.4416	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	5	100633737	100635461	5	1.2188	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	5	100719153	100758838	13	1.3528	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	5	102503745	102530584	10	0.6978	LARGE-GAIN	FOCAL	1	PPIP5K2
TCGA.AA.A00N.01A	5	106716907	108523082	32	0.8605	LARGE-GAIN	FOCAL	3	"EFNA5,FBXL17,FER"
TCGA.AA.3509.01A	5	110434369	110456643	13	1.6633	LARGE-GAIN	FOCAL	1	WDR36
TCGA.AZ.4684.01A	5	110434369	110456643	13	1.5858	LARGE-GAIN	FOCAL	1	WDR36
TCGA.F5.6811.01A	5	110462268	110470845	9	0.7852	LARGE-GAIN	FOCAL	1	WDR36
TCGA.DM.A1HB	5	115069713	115110089	16	0.8745	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A017.01A	5	115803229	115815767	6	0.7131	LARGE-GAIN	FOCAL	1	SEMA6A
TCGA.AG.3906.01A	5	118445838	118464896	6	1.0861	LARGE-GAIN	FOCAL	1	DMXL1
TCGA.CK.5914.01A	5	118809554	118835021	10	0.9758	LARGE-GAIN	FOCAL	1	HSD17B4
TCGA.AA.A00N.01A	5	118872071	121362620	16	0.6908	LARGE-GAIN	FOCAL	5	"FAM170A,FTMT,HSD17B4,PRR16,SRFBP1"
TCGA.AA.A02K.01A	5	121412540	122165220	27	0.8379	LARGE-GAIN	FOCAL	5	"LOC100505841,LOX,SNCAIP,SNX2,ZNF474"
TCGA.AA.A00N.01A	5	121412551	121786970	14	1.0653	LARGE-GAIN	FOCAL	4	"LOC100505841,LOX,SNCAIP,ZNF474"
TCGA.AA.A00N.01A	5	122491559	122685588	8	1.1337	LARGE-GAIN	FOCAL	2	"CEP120,PRDM6"
TCGA.CK.5914.01A	5	122515804	122717753	9	1.1393	LARGE-GAIN	FOCAL	2	"CEP120,PRDM6"
TCGA.CK.5914.01A	5	122758567	122949998	14	0.6986	LARGE-GAIN	FOCAL	2	"CEP120,CSNK1G3"
TCGA.AA.A00N.01A	5	126213830	126792773	27	1.3079	LARGE-GAIN	FOCAL	3	"C5orf63,MARCH3,MEGF10"
TCGA.AA.A010.01A	5	126732197	126771005	11	1.0538	LARGE-GAIN	FOCAL	1	MEGF10
TCGA.AG.3906.01A	5	126859145	126862263	3	0.7322	LARGE-GAIN	FOCAL	1	PRRC1
TCGA.AA.A00N.01A	5	127466746	127488357	10	0.9205	LARGE-GAIN	FOCAL	1	SLC12A2
TCGA.DM.A28M.01A	5	127469810	127522166	20	1.3135	LARGE-GAIN	FOCAL	1	SLC12A2
TCGA.AA.A00N.01A	5	127595106	127800417	59	1.0694	LARGE-GAIN	FOCAL	1	FBN2
TCGA.AA.A010.01A	5	127671633	127700256	11	0.8091	LARGE-GAIN	FOCAL	1	FBN2
TCGA.AG.A014.01A	5	127684992	127686538	3	1.1064	LARGE-GAIN	FOCAL	1	FBN2
TCGA.CK.5914.01A	5	127700256	127744319	11	0.8058	LARGE-GAIN	FOCAL	1	FBN2
TCGA.A6.3808.01A	5	128359297	129001135	24	1.3873	LARGE-GAIN	FOCAL	3	"ADAMTS19,ISOC1,SLC27A6"
TCGA.AA.A010.01A	5	131396368	131528640	5	0.6815	LARGE-GAIN	FOCAL	3	"CSF2,IL3,P4HA2"
TCGA.AG.3906.01A	5	131598250	131607432	5	0.7418	LARGE-GAIN	FOCAL	1	PDLIM4
TCGA.AG.3906.01A	5	131796262	131821283	4	0.8969	LARGE-GAIN	FOCAL	1	IRF1
TCGA.AA.3861.01A	5	131923577	131972753	16	1.7194	LARGE-GAIN	FOCAL	1	RAD50
TCGA.DM.A28M.01A	5	132036268	132044535	7	0.9878	LARGE-GAIN	FOCAL	1	KIF3A
TCGA.AA.3509.01A	5	132038253	132061765	11	0.817	LARGE-GAIN	FOCAL	1	KIF3A
TCGA.AZ.4684.01A	5	132038540	132061765	10	0.7793	LARGE-GAIN	FOCAL	1	KIF3A
TCGA.AA.A00Q.01A	5	132097162	132101052	2	1.3095	LARGE-GAIN	FOCAL	1	8-Sep
TCGA.AA.3980.01A	5	133304105	133308511	2	0.93	LARGE-GAIN	FOCAL	2	"C5orf15,VDAC1"
TCGA.AG.3906.01A	5	133316369	133328572	4	0.8125	LARGE-GAIN	FOCAL	1	VDAC1
TCGA.AG.3909.01A	5	133473720	133480426	6	0.9421	LARGE-GAIN	FOCAL	1	TCF7
TCGA.AM.5820	5	133864598	133905010	24	0.6894	LARGE-GAIN	FOCAL	1	JADE2
TCGA.AA.A00N.01A	5	133880106	133914133	10	0.9094	LARGE-GAIN	FOCAL	1	JADE2
TCGA.AA.A02K.01A	5	134060621	134102559	8	0.82	LARGE-GAIN	FOCAL	3	"CAMLG,DDX46,SEC24A"
TCGA.AG.3909.01A	5	135567005	136975512	24	0.7183	LARGE-GAIN	FOCAL	3	"KLHL3,SPOCK1,TRPC7"
TCGA.AA.A00N.01A	5	135583151	137206361	34	1.0767	LARGE-GAIN	FOCAL	5	"HNRNPA0,KLHL3,MYOT,SPOCK1,TRPC7"
TCGA.AA.3509.01A	5	137281542	137342632	13	0.7552	LARGE-GAIN	FOCAL	1	FAM13B
TCGA.DM.A28M.01A	5	137281542	137342632	14	0.8289	LARGE-GAIN	FOCAL	1	FAM13B
TCGA.AZ.4684.01A	5	137295255	137298036	3	1.6306	LARGE-GAIN	FOCAL	1	FAM13B
TCGA.AG.3909.01A	5	137514195	137519632	8	0.8516	LARGE-GAIN	FOCAL	2	"BRD8,KIF20A"
TCGA.AA.3861.01A	5	137518012	137593316	26	1.0117	LARGE-GAIN	FOCAL	3	"CDC23,GFRA3,KIF20A"
TCGA.AA.3862.01A	5	137518012	137593316	26	1.3446	LARGE-GAIN	FOCAL	3	"CDC23,GFRA3,KIF20A"
TCGA.AA.A00N.01A	5	137715231	137735497	7	0.8176	LARGE-GAIN	FOCAL	1	KDM3B
TCGA.AG.3909.01A	5	137721669	137759757	10	0.6976	LARGE-GAIN	FOCAL	1	KDM3B
TCGA.AG.3906.01A	5	137756418	137849216	23	0.8314	LARGE-GAIN	FOCAL	4	"EGR1,ETF1,KDM3B,REEP2"
TCGA.AA.A00N.01A	5	138775026	138941290	10	0.9244	LARGE-GAIN	FOCAL	4	"DNAJC18,ECSCR,TMEM173,UBE2D2"
TCGA.AA.A010.01A	5	138775026	138941290	10	1.0825	LARGE-GAIN	FOCAL	4	"DNAJC18,ECSCR,TMEM173,UBE2D2"
TCGA.AZ.4684.01A	5	139495549	139504910	11	1.8477	LARGE-GAIN	FOCAL	1	PURA
TCGA.DM.A28M.01A	5	139495549	139505329	13	1.0438	LARGE-GAIN	FOCAL	1	PURA
TCGA.AA.3509.01A	5	139495958	139504515	9	2.0598	LARGE-GAIN	FOCAL	1	PURA
TCGA.CK.5914.01A	5	139574004	139682554	6	0.8484	LARGE-GAIN	FOCAL	2	"CYSTM1,PFDN1"
TCGA.AA.A00N.01A	5	139838188	139892901	18	0.8061	LARGE-GAIN	FOCAL	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AA.A010.01A	5	139927273	140019065	18	0.9721	LARGE-GAIN	FOCAL	7	"ANKHD1-EIF4EBP3,APBB3,CD14,EIF4EBP3,SLC35A4,SRA1,TMCO6"
TCGA.AG.A01W.01A	5	140146034	140208226	22	0.7772	LARGE-GAIN	FOCAL	6	"PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6"
TCGA.AA.A00Z.01A	5	140167584	140237299	16	0.7192	LARGE-GAIN	FOCAL	10	"PCDHA1,PCDHA10,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.AG.3605.01A	5	140181126	140231071	15	0.7515	LARGE-GAIN	FOCAL	9	"PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.AA.A00N.01A	5	140950932	140967727	17	0.6903	LARGE-GAIN	FOCAL	1	DIAPH1
TCGA.AA.3861.01A	5	141034882	141052109	17	1.4385	LARGE-GAIN	FOCAL	1	ARAP3
TCGA.AA.3862.01A	5	141034882	141052109	17	1.6715	LARGE-GAIN	FOCAL	1	ARAP3
TCGA.AG.3891.01A	5	141367235	141387315	6	0.7524	LARGE-GAIN	FOCAL	2	"GNPDA1,RNF14"
TCGA.AG.3906.01A	5	141367235	141391428	7	1.3735	LARGE-GAIN	FOCAL	2	"GNPDA1,RNF14"
TCGA.D5.6539	5	144349571	144369949	3	1.3967	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	5	145039896	145060736	10	0.8876	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	5	145252157	145463978	11	1.6197	LARGE-GAIN	FOCAL	3	"GRXCR2,PLAC8L1,SH3RF2"
TCGA.CK.5914.01A	5	145393302	145428626	3	1.2968	LARGE-GAIN	FOCAL	1	SH3RF2
TCGA.AA.A00N.01A	5	145464986	145536947	23	0.7022	LARGE-GAIN	FOCAL	2	"LARS,PLAC8L1"
TCGA.AZ.4684.01A	5	145499883	145509534	5	1.3881	LARGE-GAIN	FOCAL	1	LARS
TCGA.AA.3862.01A	5	145519719	145886577	57	0.9613	LARGE-GAIN	FOCAL	4	"LARS,POU4F3,RBM27,TCERG1"
TCGA.AA.3861.01A	5	145637972	145894749	35	0.8271	LARGE-GAIN	FOCAL	4	"GPR151,POU4F3,RBM27,TCERG1"
TCGA.A6.3808.01A	5	145969512	147479970	80	0.8708	LARGE-GAIN	FOCAL	8	"C5orf46,DPYSL3,JAKMIP2,PPP2R2B,SCGB3A2,SPINK1,SPINK5,STK32A"
TCGA.AZ.4684.01A	5	147019158	147021201	3	1.3719	LARGE-GAIN	FOCAL	1	JAKMIP2
TCGA.A6.3808.01A	5	147510773	147795442	33	1.9482	LARGE-GAIN	FOCAL	7	"FBXO38,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9"
TCGA.AA.3509.01A	5	147585513	147820638	34	0.9825	LARGE-GAIN	FOCAL	5	"FBXO38,SPINK13,SPINK6,SPINK7,SPINK9"
TCGA.AZ.4684.01A	5	147661636	147820638	29	0.9654	LARGE-GAIN	FOCAL	4	"FBXO38,SPINK13,SPINK7,SPINK9"
TCGA.DY.A1DC	5	147733145	147792738	15	0.7613	LARGE-GAIN	FOCAL	1	FBXO38
TCGA.AA.A01Z	5	148254107	148598530	150	0.8647	LARGE-GAIN	FOCAL	2	"ABLIM3,SH3TC2"
TCGA.AG.3909.01A	5	148384225	148715110	56	0.7197	LARGE-GAIN	FOCAL	3	"ABLIM3,AFAP1L1,SH3TC2"
TCGA.AA.A00N.01A	5	148384225	148725044	59	0.9913	LARGE-GAIN	FOCAL	4	"ABLIM3,AFAP1L1,GRPEL2,SH3TC2"
TCGA.CK.5914.01A	5	148577755	148712211	37	0.8007	LARGE-GAIN	FOCAL	2	"ABLIM3,AFAP1L1"
TCGA.AA.A00N.01A	5	148989070	149294452	43	1.0822	LARGE-GAIN	FOCAL	3	"ARHGEF37,PDE6A,PPARGC1B"
TCGA.AA.A010.01A	5	148989070	149314081	47	0.8688	LARGE-GAIN	FOCAL	3	"ARHGEF37,PDE6A,PPARGC1B"
TCGA.AG.3909.01A	5	149001248	149278901	33	0.9098	LARGE-GAIN	FOCAL	3	"ARHGEF37,PDE6A,PPARGC1B"
TCGA.AA.A00N.01A	5	149389657	149512286	51	0.7619	LARGE-GAIN	FOCAL	3	"CSF1R,HMGXB3,PDGFRB"
TCGA.AA.A010.01A	5	149427150	149512286	38	0.8859	LARGE-GAIN	FOCAL	3	"CSF1R,HMGXB3,PDGFRB"
TCGA.AA.A00N.01A	5	149624693	149669056	11	1.0503	LARGE-GAIN	FOCAL	1	CAMK2A
TCGA.AA.3862.01A	5	149743658	149778498	21	1.4861	LARGE-GAIN	FOCAL	1	TCOF1
TCGA.AG.3909.01A	5	149758770	149792141	21	0.9174	LARGE-GAIN	FOCAL	2	"CD74,TCOF1"
TCGA.AA.A00N.01A	5	149767455	149826315	21	1.0197	LARGE-GAIN	FOCAL	3	"CD74,RPS14,TCOF1"
TCGA.AA.A010.01A	5	150075041	150483084	53	0.754	LARGE-GAIN	FOCAL	8	"ANXA6,DCTN4,GPX3,IRGM,RBM22,SMIM3,TNIP1,ZNF300"
TCGA.CK.5914.01A	5	150480937	150511986	17	1.1743	LARGE-GAIN	FOCAL	1	ANXA6
TCGA.AG.3909.01A	5	150483084	150584920	32	0.7499	LARGE-GAIN	FOCAL	2	"ANXA6,CCDC69"
TCGA.AA.A00N.01A	5	150928815	151055622	18	1.2359	LARGE-GAIN	FOCAL	2	"FAT2,SPARC"
TCGA.AG.3909.01A	5	150928815	151055622	18	0.736	LARGE-GAIN	FOCAL	2	"FAT2,SPARC"
TCGA.AG.3909.01A	5	151183429	153374406	33	0.7572	LARGE-GAIN	FOCAL	5	"FAM114A2,G3BP1,GLRA1,GRIA1,NMUR2"
TCGA.AA.A00N.01A	5	151183429	153796326	60	1.0333	LARGE-GAIN	FOCAL	7	"FAM114A2,G3BP1,GALNT10,GLRA1,GRIA1,MFAP3,NMUR2"
TCGA.CK.5914.01A	5	153029861	153390744	20	0.8515	LARGE-GAIN	FOCAL	2	"FAM114A2,GRIA1"
TCGA.AA.3844	5	153349258	153363333	6	0.8496	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	5	153386167	153389192	4	0.7319	LARGE-GAIN	FOCAL	1	FAM114A2
TCGA.AA.3509.01A	5	153409017	153433102	7	1.1093	LARGE-GAIN	FOCAL	2	"FAM114A2,MFAP3"
TCGA.AZ.4684.01A	5	153409017	153433102	7	1.0953	LARGE-GAIN	FOCAL	2	"FAM114A2,MFAP3"
TCGA.AG.3909.01A	5	153674359	153826114	13	0.7608	LARGE-GAIN	FOCAL	2	"GALNT10,SAP30L"
TCGA.AA.A010.01A	5	154291265	155756512	23	0.9332	LARGE-GAIN	FOCAL	4	"GEMIN5,KIF4B,MRPL22,SGCD"
TCGA.DY.A1DC	5	154851051	154878177	25	0.7977	LARGE-GAIN	FOCAL	0	None
TCGA.CM.6163	5	154889002	154901079	6	1.1639	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	5	155756512	156346422	9	0.8113	LARGE-GAIN	FOCAL	2	"SGCD,TIMD4"
TCGA.AA.A010.01A	5	156469569	156565734	13	0.7604	LARGE-GAIN	FOCAL	3	"HAVCR1,HAVCR2,MED7"
TCGA.AA.A00N.01A	5	156476000	156887142	62	0.8466	LARGE-GAIN	FOCAL	8	"CYFIP2,FAM71B,FNDC9,HAVCR1,HAVCR2,ITK,MED7,NIPAL4"
TCGA.AA.A010.01A	5	156723626	157106799	63	0.7226	LARGE-GAIN	FOCAL	6	"ADAM19,C5orf52,CYFIP2,FNDC9,NIPAL4,SOX30"
TCGA.AA.A00N.01A	5	156908747	156957757	17	0.9116	LARGE-GAIN	FOCAL	1	ADAM19
TCGA.AA.3980.01A	5	156932650	156934019	2	0.9783	LARGE-GAIN	FOCAL	1	ADAM19
TCGA.AG.3906.01A	5	157159859	157181870	8	0.9388	LARGE-GAIN	FOCAL	2	"LSM11,THG1L"
TCGA.AA.A00N.01A	5	157214613	158266977	22	0.9729	LARGE-GAIN	FOCAL	2	"CLINT1,EBF1"
TCGA.CK.5914.01A	5	157214613	158500362	23	0.6809	LARGE-GAIN	FOCAL	2	"CLINT1,EBF1"
TCGA.BM.6198	5	158469293	158523166	21	0.69085	LARGE-GAIN	FOCAL	1	EBF1
TCGA.AA.3861.01A	5	158588256	158621684	8	2.5988	LARGE-GAIN	FOCAL	1	RNF145
TCGA.AA.3862.01A	5	158588256	158621684	8	3.0748	LARGE-GAIN	FOCAL	1	RNF145
TCGA.DM.A1HB	5	158826356	158829526	3	1.1381	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	5	159912312	160721036	24	0.6916	LARGE-GAIN	FOCAL	2	"ATP10B,GABRB2"
TCGA.DY.A1DC	5	163291770	163294053	6	0.9011	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	5	163805636	163820511	7	0.7983	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	5	165065044	165070300	8	0.86	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	5	166711804	167913430	53	1.2928	LARGE-GAIN	FOCAL	2	"TENM2,WWC1"
TCGA.AG.3909.01A	5	167379544	167894808	45	0.8968	LARGE-GAIN	FOCAL	2	"TENM2,WWC1"
TCGA.AA.3844	5	167641066	167799161	51	0.7619	LARGE-GAIN	FOCAL	2	"TENM2,WWC1"
TCGA.AA.A01Q.01A	5	167868635	167913430	9	0.7783	LARGE-GAIN	FOCAL	1	WWC1
TCGA.AA.A010.01A	5	168006184	169018035	41	0.7012	LARGE-GAIN	FOCAL	3	"PANK3,SLIT3,SPDL1"
TCGA.AA.A00N.01A	5	168093458	169509765	99	0.8199	LARGE-GAIN	FOCAL	4	"DOCK2,FAM196B,SLIT3,SPDL1"
TCGA.AG.3909.01A	5	168110939	168137881	8	0.8855	LARGE-GAIN	FOCAL	1	SLIT3
TCGA.CK.5914.01A	5	169081351	169532922	53	0.7218	LARGE-GAIN	FOCAL	3	"DOCK2,FAM196B,FOXI1"
TCGA.AG.3909.01A	5	169111163	169509765	45	0.7702	LARGE-GAIN	FOCAL	2	"DOCK2,FAM196B"
TCGA.CK.5914.01A	5	169714930	170149669	13	0.8259	LARGE-GAIN	FOCAL	3	"KCNIP1,KCNMB1,LCP2"
TCGA.AG.3909.01A	5	169720249	170148771	11	0.8418	LARGE-GAIN	FOCAL	3	"KCNIP1,KCNMB1,LCP2"
TCGA.AA.3509.01A	5	170337925	170669647	16	1.1025	LARGE-GAIN	FOCAL	1	RANBP17
TCGA.AZ.4684.01A	5	170337925	170669647	16	1.0617	LARGE-GAIN	FOCAL	1	RANBP17
TCGA.AG.3906.01A	5	170816993	170883511	13	0.8006	LARGE-GAIN	FOCAL	2	"FGF18,NPM1"
TCGA.AA.A00N.01A	5	170883511	171849361	49	0.7597	LARGE-GAIN	FOCAL	7	"EFCAB9,FBXW11,FGF18,SH3PXD2B,SMIM23,STK10,UBTD2"
TCGA.AA.A010.01A	5	171433385	171833229	35	0.8678	LARGE-GAIN	FOCAL	5	"EFCAB9,FBXW11,SH3PXD2B,STK10,UBTD2"
TCGA.AA.A024.01A	5	171789697	172196587	9	0.7353	LARGE-GAIN	FOCAL	4	"DUSP1,LOC101928093,NEURL1B,SH3PXD2B"
TCGA.AA.A010.01A	5	172197579	173337480	50	0.6937	LARGE-GAIN	FOCAL	10	"ATP6V0E1,BNIP1,BOD1,CPEB4,CREBRF,DUSP1,ERGIC1,NKX2-5,RPL26L1,STC2"
TCGA.DM.A1D9	5	173205057	173206215	7	1.0405	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	5	173425107	173428117	3	1.8553	LARGE-GAIN	FOCAL	1	C5orf47
TCGA.AA.3509.01A	5	173426665	173428117	2	2.1658	LARGE-GAIN	FOCAL	1	C5orf47
TCGA.AA.A00N.01A	5	173473730	173534266	4	1.1379	LARGE-GAIN	FOCAL	1	HMP19
TCGA.AA.3861.01A	5	175306869	175749254	21	2.0169	LARGE-GAIN	FOCAL	4	"CPLX2,FAM153B,SIMC1,THOC3"
TCGA.AA.3862.01A	5	175306869	175749254	24	2.8083	LARGE-GAIN	FOCAL	4	"CPLX2,FAM153B,SIMC1,THOC3"
TCGA.AA.3939.01A	5	175511880	175524274	5	1.6185	LARGE-GAIN	FOCAL	1	FAM153B
TCGA.AG.3906.01A	5	175716668	175751585	8	0.6888	LARGE-GAIN	FOCAL	1	SIMC1
TCGA.CK.5914.01A	5	176318357	176338254	7	0.8567	LARGE-GAIN	FOCAL	2	"HK3,UIMC1"
TCGA.AG.A01L.01A	5	176489039	176562063	12	0.7286	LARGE-GAIN	FOCAL	3	"FGFR4,NSD1,ZNF346"
TCGA.A6.3808.01A	5	176516548	176524255	9	1.9747	LARGE-GAIN	FOCAL	1	FGFR4
TCGA.AG.3906.01A	5	176792877	176919334	36	0.9774	LARGE-GAIN	FOCAL	8	"DBN1,F12,GRK6,PDLIM7,PFN3,PRR7,RGS14,SLC34A1"
TCGA.AG.3906.01A	5	176965859	177035864	8	0.8144	LARGE-GAIN	FOCAL	3	"B4GALT7,FAM193B,TMED9"
TCGA.AA.3861.01A	5	177036494	177565074	24	1.3921	LARGE-GAIN	FOCAL	5	"B4GALT7,FAM153A,N4BP3,PROP1,RMND5B"
TCGA.AA.3862.01A	5	177151070	177565074	22	2.1562	LARGE-GAIN	FOCAL	4	"FAM153A,N4BP3,PROP1,RMND5B"
TCGA.A6.3808.01A	5	177419709	177422797	3	2.071	LARGE-GAIN	FOCAL	1	PROP1
TCGA.AG.3906.01A	5	178409872	178418821	5	0.9753	LARGE-GAIN	FOCAL	1	GRM6
TCGA.AM.5820	5	178410436	178425191	8	0.7278	LARGE-GAIN	FOCAL	1	GRM6
TCGA.AG.3906.01A	5	179042470	179048193	8	1.1177	LARGE-GAIN	FOCAL	1	HNRNPH1
TCGA.AG.A015.01A	5	179224970	179228334	5	0.8507	LARGE-GAIN	FOCAL	1	MGAT4B
TCGA.AA.A00D.01A	5	180275740	180276804	2	1.3098	LARGE-GAIN	FOCAL	1	ZFP62
TCGA.AH.6549.01A	5	180375298	180429620	8	0.9581	LARGE-GAIN	FOCAL	2	"BTNL3,BTNL8"
TCGA.AG.3906.01A	5	180477046	180482923	4	0.8815	LARGE-GAIN	FOCAL	1	BTNL9
TCGA.AA.A024.01A	5	180668484	180686963	4	1.4327	LARGE-GAIN	FOCAL	2	"GNB2L1,TRIM52"
TCGA.AA.A02W.01A	5	180668484	180686963	4	1.0708	LARGE-GAIN	FOCAL	2	"GNB2L1,TRIM52"
TCGA.DM.A28K	6	203844	285694	42	0.7741	LARGE-GAIN	FOCAL	0	None
TCGA.AY.6196	6	203844	1951580	882	0.7501	LARGE-GAIN	FOCAL	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AY.5543	6	279694	303120	4	1.0513	LARGE-GAIN	FOCAL	1	DUSP22
TCGA.A6.4107	6	279694	366332	17	0.8412	LARGE-GAIN	FOCAL	1	DUSP22
TCGA.G4.6314	6	303016	378702	17	1.0454	LARGE-GAIN	FOCAL	1	DUSP22
TCGA.AD.6965	6	323325	334824	4	0.8072	LARGE-GAIN	FOCAL	1	DUSP22
TCGA.AA.A01K.01A	6	632894	2685483	24	0.9279	LARGE-GAIN	FOCAL	7	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,MYLK4"
TCGA.AA.A00D.01A	6	3077966	3104425	6	0.732	LARGE-GAIN	FOCAL	1	RIPK1
TCGA.AG.A015.01A	6	3152668	3155818	4	1.3055	LARGE-GAIN	FOCAL	2	"BPHL,TUBB2A"
TCGA.AG.A01L.01A	6	3152668	3156238	5	1.0711	LARGE-GAIN	FOCAL	2	"BPHL,TUBB2A"
TCGA.AG.3906.01A	6	4058949	4087818	7	1.0161	LARGE-GAIN	FOCAL	3	"C6orf201,FAM217A,PRPF4B"
TCGA.AA.A010.01A	6	4135702	5771475	28	0.6939	LARGE-GAIN	FOCAL	6	"CDYL,ECI2,FARS2,LYRM4,PPP1R3G,RPP40"
TCGA.A6.3808.01A	6	5004073	7189355	42	1.0538	LARGE-GAIN	FOCAL	8	"F13A1,FARS2,LY86,LYRM4,NRN1,PPP1R3G,RPP40,RREB1"
TCGA.AA.A00A.01A	6	7410560	7417602	5	0.8358	LARGE-GAIN	FOCAL	1	RIOK1
TCGA.AG.3891.01A	6	7889673	7895289	3	0.9508	LARGE-GAIN	FOCAL	1	TXNDC5
TCGA.AA.A010.01A	6	8015845	8102633	10	0.9831	LARGE-GAIN	FOCAL	2	"BLOC1S5,EEF1E1"
TCGA.AA.3509.01A	6	8417065	8419761	3	1.6872	LARGE-GAIN	FOCAL	1	SLC35B3
TCGA.AZ.4684.01A	6	8417065	8420917	4	1.5675	LARGE-GAIN	FOCAL	1	SLC35B3
TCGA.AA.A010.01A	6	10874226	10887268	6	1.4594	LARGE-GAIN	FOCAL	2	"GCM2,SYCP2L"
TCGA.AA.A00N.01A	6	12933874	13305289	14	0.9824	LARGE-GAIN	FOCAL	3	"LOC100130357,PHACTR1,TBC1D7"
TCGA.AA.A024.01A	6	13599212	13601014	2	2.1621	LARGE-GAIN	FOCAL	1	SIRT5
TCGA.CK.5914.01A	6	13632554	13658952	10	0.7582	LARGE-GAIN	FOCAL	1	RANBP9
TCGA.AA.A03J	6	15031850	15132948	30	0.8638	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	6	16274589	16327968	8	0.7582	LARGE-GAIN	FOCAL	2	"ATXN1,GMPR"
TCGA.AA.A01R	6	16714216	17346259	219	0.8745	LARGE-GAIN	FOCAL	3	"ATXN1,RBM24,STMND1"
TCGA.AG.A00C.01A	6	17600653	17608398	5	0.7372	LARGE-GAIN	FOCAL	1	FAM8A1
TCGA.AA.A010.01A	6	22287603	22570353	8	0.8807	LARGE-GAIN	FOCAL	2	"HDGFL1,PRL"
TCGA.AA.3488	6	23304444	23308912	5	1.0038	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	6	24145729	24301902	9	0.733	LARGE-GAIN	FOCAL	2	"DCDC2,NRSN1"
TCGA.AA.A010.01A	6	24174911	24456679	31	0.7086	LARGE-GAIN	FOCAL	4	"DCDC2,GPLD1,KAAG1,MRS2"
TCGA.CK.5914.01A	6	24505045	24601203	28	0.9214	LARGE-GAIN	FOCAL	2	"ALDH5A1,KIAA0319"
TCGA.AA.A00N.01A	6	24520612	24601203	25	0.8581	LARGE-GAIN	FOCAL	2	"ALDH5A1,KIAA0319"
TCGA.CK.5914.01A	6	24806561	25450506	42	0.7311	LARGE-GAIN	FOCAL	2	"FAM65B,LRRC16A"
TCGA.AA.A00N.01A	6	24818710	25113770	32	0.6916	LARGE-GAIN	FOCAL	1	FAM65B
TCGA.AA.A00N.01A	6	25420271	25556882	25	0.8451	LARGE-GAIN	FOCAL	1	LRRC16A
TCGA.AA.A010.01A	6	25652581	25727098	13	0.846	LARGE-GAIN	FOCAL	2	"HIST1H2AA,SCGN"
TCGA.CK.5914.01A	6	25769185	25779244	7	1.0047	LARGE-GAIN	FOCAL	1	SLC17A4
TCGA.AA.3509.01A	6	25826652	25868474	10	1.0887	LARGE-GAIN	FOCAL	2	"SLC17A1,SLC17A3"
TCGA.AZ.4684.01A	6	25826652	25868474	10	1.25	LARGE-GAIN	FOCAL	2	"SLC17A1,SLC17A3"
TCGA.AG.3909.01A	6	26271155	26501778	48	0.8214	LARGE-GAIN	FOCAL	9	"BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HIST1H2BI,HIST1H3G,HIST1H4H"
TCGA.CK.5914.01A	6	26273155	26501778	47	0.82	LARGE-GAIN	FOCAL	8	"BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HIST1H2BI,HIST1H4H"
TCGA.AA.A00N.01A	6	26597184	27114868	12	1.0171	LARGE-GAIN	FOCAL	7	"ABT1,HIST1H2AG,HIST1H2AH,HIST1H2BJ,HIST1H2BK,HIST1H4I,ZNF322"
TCGA.AA.A01Q.01A	6	26597184	27218798	14	0.8222	LARGE-GAIN	FOCAL	8	"ABT1,HIST1H2AG,HIST1H2AH,HIST1H2BJ,HIST1H2BK,HIST1H4I,PRSS16,ZNF322"
TCGA.AA.A010.01A	6	26597184	27293023	24	1.2404	LARGE-GAIN	FOCAL	9	"ABT1,HIST1H2AG,HIST1H2AH,HIST1H2BJ,HIST1H2BK,HIST1H4I,POM121L2,PRSS16,ZNF322"
TCGA.A6.6653	6	26861037	26948173	4	1.1285	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A014.01A	6	27805685	27806763	3	3.0536	LARGE-GAIN	FOCAL	2	"HIST1H2AK,HIST1H2BN"
TCGA.AG.3906.01A	6	27806388	27806763	2	1.0834	LARGE-GAIN	FOCAL	1	HIST1H2BN
TCGA.AA.A00N.01A	6	28293974	28327312	4	0.8112	LARGE-GAIN	FOCAL	2	"ZKSCAN3,ZSCAN31"
TCGA.AA.A010.01A	6	28327312	28365789	10	0.9816	LARGE-GAIN	FOCAL	2	"ZKSCAN3,ZSCAN12"
TCGA.AA.A00N.01A	6	28360629	28403614	5	0.6867	LARGE-GAIN	FOCAL	2	"ZSCAN12,ZSCAN23"
TCGA.AA.A00N.01A	6	29230433	29454493	14	1.0605	LARGE-GAIN	FOCAL	7	"OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2H1,OR5V1"
TCGA.A6.6138	6	29575404	29669750	49	0.7006	LARGE-GAIN	FOCAL	3	"GABBR1,MOG,ZFP57"
TCGA.AA.A01R	6	29645633	29850273	168	0.6865	LARGE-GAIN	FOCAL	3	"HLA-F,HLA-G,LOC554223"
TCGA.AA.A010.01A	6	29794717	30231001	60	0.8377	LARGE-GAIN	FOCAL	10	"HLA-A,HLA-G,PPP1R11,RNF39,TRIM10,TRIM15,TRIM26,TRIM31,TRIM40,ZNRD1"
TCGA.AA.A024.01A	6	30521098	30523323	4	0.9755	LARGE-GAIN	FOCAL	1	GNL1
TCGA.AA.A024.01A	6	30550130	30557417	9	0.7808	LARGE-GAIN	FOCAL	1	ABCF1
TCGA.AA.3939.01A	6	30623962	30624702	2	1.6802	LARGE-GAIN	FOCAL	1	DHX16
TCGA.AG.3891.01A	6	30690272	30690645	2	1.2997	LARGE-GAIN	FOCAL	1	TUBB
TCGA.AG.3906.01A	6	30858698	30863141	7	0.7607	LARGE-GAIN	FOCAL	1	DDR1
TCGA.AA.A00N.01A	6	31079119	31088055	5	1.5654	LARGE-GAIN	FOCAL	3	"C6orf15,CDSN,PSORS1C1"
TCGA.AG.3909.01A	6	31079119	31088055	5	0.9255	LARGE-GAIN	FOCAL	3	"C6orf15,CDSN,PSORS1C1"
TCGA.CK.5914.01A	6	31079119	31088055	5	1.1329	LARGE-GAIN	FOCAL	3	"C6orf15,CDSN,PSORS1C1"
TCGA.CM.6680	6	31360094	31451475	52	0.8481	LARGE-GAIN	FOCAL	1	MICA
TCGA.CK.4952.01A	6	31431944	31432497	2	3.3992	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3592	6	31448532	31474687	19	1.0947	LARGE-GAIN	FOCAL	1	MICB
TCGA.AA.A010.01A	6	31465904	31555388	35	0.8751	LARGE-GAIN	FOCAL	9	"ATP6V1G2,DDX39B,LST1,LTA,LTB,MCCD1,MICB,NFKBIL1,TNF"
TCGA.AA.3967.01A	6	31583006	31607929	24	0.6918	LARGE-GAIN	FOCAL	3	"AIF1,BAG6,PRRC2A"
TCGA.A6.3808.01A	6	31681501	31726838	28	1.0752	LARGE-GAIN	FOCAL	6	"C6orf25,CLIC1,DDAH2,LY6G6C,LY6G6D,MSH5"
TCGA.AG.A015.01A	6	31742261	31752966	12	1.0203	LARGE-GAIN	FOCAL	2	"VARS,VWA7"
TCGA.AG.3891.01A	6	31805058	31831353	8	0.9777	LARGE-GAIN	FOCAL	3	"C6orf48,NEU1,SLC44A4"
TCGA.AG.3906.01A	6	31805058	31920030	55	0.7539	LARGE-GAIN	FOCAL	8	"C2,C6orf48,CFB,EHMT2,NELFE,NEU1,SLC44A4,ZBTB12"
TCGA.AA.A024.01A	6	31930790	31931677	3	1.6628	LARGE-GAIN	FOCAL	1	SKIV2L
TCGA.A6.3808.01A	6	32046833	32149126	48	0.7816	LARGE-GAIN	FOCAL	9	"AGER,AGPAT1,ATF6B,EGFL8,FKBPL,PPT2,PRRT1,RNF5,TNXB"
TCGA.AA.A010.01A	6	32155726	32191573	32	0.6961	LARGE-GAIN	FOCAL	3	"GPSM3,NOTCH4,PBX2"
TCGA.A6.3808.01A	6	32157434	32292357	39	1.1058	LARGE-GAIN	FOCAL	4	"C6orf10,GPSM3,NOTCH4,PBX2"
TCGA.CK.5914.01A	6	32166694	32260751	21	0.8983	LARGE-GAIN	FOCAL	2	"C6orf10,NOTCH4"
TCGA.AA.A00N.01A	6	32180557	32260751	14	0.9393	LARGE-GAIN	FOCAL	2	"C6orf10,NOTCH4"
TCGA.AG.3909.01A	6	32185720	32191573	7	0.9472	LARGE-GAIN	FOCAL	1	NOTCH4
TCGA.AA.A00N.01A	6	32370665	32411481	7	0.9695	LARGE-GAIN	FOCAL	2	"BTNL2,HLA-DRA"
TCGA.AA.3509.01A	6	32485752	32546777	5	2.2813	LARGE-GAIN	FOCAL	2	"HLA-DRB1,HLA-DRB5"
TCGA.CK.4952.01A	6	32595094	32740506	17	2.111	LARGE-GAIN	FOCAL	4	"HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2"
TCGA.CK.5914.01A	6	32902671	32940604	13	0.9329	LARGE-GAIN	FOCAL	3	"BRD2,HLA-DMA,HLA-DMB"
TCGA.AD.6965	6	32955975	32959769	4	1.1243	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6929	6	32955975	32959769	4	1.3481	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6930	6	32955975	32959769	4	1.2565	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	6	32974520	32977181	5	1.5857	LARGE-GAIN	FOCAL	1	HLA-DOA
TCGA.AG.A01L.01A	6	32974520	32977181	5	0.8015	LARGE-GAIN	FOCAL	1	HLA-DOA
TCGA.DY.A1DG	6	33024605	33089195	47	0.9255	LARGE-GAIN	FOCAL	2	"HLA-DPA1,HLA-DPB1"
TCGA.AA.A024.01A	6	33162675	33166037	6	1.2849	LARGE-GAIN	FOCAL	1	RXRB
TCGA.AF.3914.01A	6	33237199	33239306	3	1.3328	LARGE-GAIN	FOCAL	1	VPS52
TCGA.AG.3891.01A	6	33377345	33406504	19	0.6785	LARGE-GAIN	FOCAL	4	"CUTA,KIFC1,PHF1,SYNGAP1"
TCGA.AG.3906.01A	6	33380981	33414305	24	0.9212	LARGE-GAIN	FOCAL	3	"CUTA,PHF1,SYNGAP1"
TCGA.AG.A015.01A	6	33650253	33669059	22	0.6974	LARGE-GAIN	FOCAL	2	"ITPR3,UQCC2"
TCGA.CK.5914.01A	6	34558278	34725225	6	1.1921	LARGE-GAIN	FOCAL	2	"C6orf106,SNRPC"
TCGA.CK.5914.01A	6	34934995	34985223	9	1.1954	LARGE-GAIN	FOCAL	1	ANKS1A
TCGA.AA.A010.01A	6	35096788	35182142	5	0.8274	LARGE-GAIN	FOCAL	2	"SCUBE3,TCP11"
TCGA.AG.3909.01A	6	35378817	35393592	6	0.8041	LARGE-GAIN	FOCAL	1	PPARD
TCGA.AG.A016.01A	6	35443061	35471299	9	0.8387	LARGE-GAIN	FOCAL	2	"TEAD3,TULP1"
TCGA.AG.3891.01A	6	35936604	35959399	5	0.7898	LARGE-GAIN	FOCAL	1	SLC26A8
TCGA.DM.A28F	6	35968099	35980711	4	0.8591	LARGE-GAIN	FOCAL	1	SLC26A8
TCGA.CK.5914.01A	6	36189893	36274010	11	1.022	LARGE-GAIN	FOCAL	2	"BRPF3,PNPLA1"
TCGA.AA.A00N.01A	6	36189893	36297876	23	0.6782	LARGE-GAIN	FOCAL	3	"BRPF3,C6orf222,PNPLA1"
TCGA.AA.A00N.01A	6	36730635	36765884	7	0.76	LARGE-GAIN	FOCAL	1	CPNE5
TCGA.CK.5914.01A	6	36730635	36765884	7	1.0495	LARGE-GAIN	FOCAL	1	CPNE5
TCGA.AG.3909.01A	6	36730635	36790765	10	0.7368	LARGE-GAIN	FOCAL	1	CPNE5
TCGA.AA.A00N.01A	6	36973526	36995712	15	1.1547	LARGE-GAIN	FOCAL	1	FGD2
TCGA.AA.A00N.01A	6	37182916	37298773	15	0.7169	LARGE-GAIN	FOCAL	2	"TBC1D22B,TMEM217"
TCGA.AA.A01Q.01A	6	37467518	37613925	2	0.6855	LARGE-GAIN	FOCAL	2	"CCDC167,MDGA1"
TCGA.AA.A004.01A	6	37897709	39563803	148	2.3007	LARGE-GAIN	FOCAL	10	"BTBD9,DNAH8,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,SAYSD1,ZFAND3"
TCGA.AA.3561	6	38832777	39726756	377	1.0888	LARGE-GAIN	FOCAL	7	"DNAH8,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,SAYSD1"
TCGA.CK.5914.01A	6	38950073	39073196	19	0.8181	LARGE-GAIN	FOCAL	3	"DNAH8,GLP1R,SAYSD1"
TCGA.AA.A00N.01A	6	39033457	39053664	9	0.9744	LARGE-GAIN	FOCAL	1	GLP1R
TCGA.AG.3909.01A	6	39033457	39053664	9	0.7749	LARGE-GAIN	FOCAL	1	GLP1R
TCGA.AA.A00N.01A	6	39311437	40399461	59	0.7747	LARGE-GAIN	FOCAL	4	"DAAM2,KIF6,LRFN2,MOCS1"
TCGA.AZ.4684.01A	6	39580915	39692952	6	1.121	LARGE-GAIN	FOCAL	1	KIF6
TCGA.AA.3561	6	39727592	40988839	635	1.5179	LARGE-GAIN	FOCAL	3	"DAAM2,LRFN2,MOCS1"
TCGA.DY.A1DG	6	39758361	40003501	114	0.7191	LARGE-GAIN	FOCAL	2	"DAAM2,MOCS1"
TCGA.CK.5914.01A	6	39824048	39847047	12	1.2234	LARGE-GAIN	FOCAL	1	DAAM2
TCGA.AG.3909.01A	6	39824048	39895016	33	0.8951	LARGE-GAIN	FOCAL	2	"DAAM2,MOCS1"
TCGA.DY.A1DG	6	40095311	40133080	22	0.7016	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DG	6	40147068	40338060	117	0.9269	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DG	6	40763465	40839427	38	0.8267	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	6	41065033	41318364	30	0.6997	LARGE-GAIN	FOCAL	7	"NCR2,NFYA,TREM1,TREM2,TREML1,TREML2,TREML4"
TCGA.AA.A00N.01A	6	41117341	41196106	16	1.7924	LARGE-GAIN	FOCAL	4	"TREM2,TREML1,TREML2,TREML4"
TCGA.AG.3909.01A	6	41117341	41196106	16	0.8932	LARGE-GAIN	FOCAL	4	"TREM2,TREML1,TREML2,TREML4"
TCGA.CK.5914.01A	6	41117341	41318364	29	0.9027	LARGE-GAIN	FOCAL	6	"NCR2,TREM1,TREM2,TREML1,TREML2,TREML4"
TCGA.DY.A1DG	6	41189843	41296678	68	1.0058	LARGE-GAIN	FOCAL	2	"TREM1,TREML4"
TCGA.AG.3909.01A	6	41243826	41309529	7	0.8484	LARGE-GAIN	FOCAL	2	"NCR2,TREM1"
TCGA.AA.A00N.01A	6	41243826	41310617	8	1.6468	LARGE-GAIN	FOCAL	2	"NCR2,TREM1"
TCGA.DY.A1DG	6	41300896	41362620	19	1.3486	LARGE-GAIN	FOCAL	1	NCR2
TCGA.DY.A1DG	6	41363750	41443688	30	1.0825	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	6	41703795	41884486	28	0.8257	LARGE-GAIN	FOCAL	7	"FRS3,MED20,PGC,PRICKLE4,TFEB,TOMM6,USP49"
TCGA.AG.A014.01A	6	41766368	41773368	4	2.8825	LARGE-GAIN	FOCAL	1	USP49
TCGA.AA.A010.01A	6	42109996	42532030	31	1.0199	LARGE-GAIN	FOCAL	6	"C6orf132,GUCA1A,GUCA1B,MRPS10,TRERF1,UBR2"
TCGA.CK.5914.01A	6	42617975	42630949	9	0.716	LARGE-GAIN	FOCAL	1	UBR2
TCGA.AG.A00C.01A	6	42650725	42658720	5	0.7801	LARGE-GAIN	FOCAL	1	UBR2
TCGA.AA.A00O.01A	6	42650725	42932021	40	1.0544	LARGE-GAIN	FOCAL	10	"C6orf226,CNPY3,GLTSCR1L,GNMT,PEX6,PRPH2,PTCRA,RPL7L1,TBCC,UBR2"
TCGA.AA.A010.01A	6	42851140	42897267	10	1.2138	LARGE-GAIN	FOCAL	4	"C6orf226,CNPY3,PTCRA,RPL7L1"
TCGA.A6.3808.01A	6	43005418	43017670	15	1.3108	LARGE-GAIN	FOCAL	1	CUL7
TCGA.DM.A1HB	6	43045461	43199481	29	0.7546	LARGE-GAIN	FOCAL	4	"CUL9,DNPH1,PTK7,SRF"
TCGA.AA.A00N.01A	6	43096664	43112911	10	0.8856	LARGE-GAIN	FOCAL	1	PTK7
TCGA.CK.5914.01A	6	43156221	43183869	20	0.8035	LARGE-GAIN	FOCAL	1	CUL9
TCGA.A6.3808.01A	6	43166319	43416569	80	0.765	LARGE-GAIN	FOCAL	7	"ABCC10,CRIP3,CUL9,DNPH1,SLC22A7,TTBK1,ZNF318"
TCGA.AG.3906.01A	6	43188170	43230505	17	0.7667	LARGE-GAIN	FOCAL	3	"CUL9,DNPH1,TTBK1"
TCGA.AF.3914.01A	6	43276458	43310386	6	1.0737	LARGE-GAIN	FOCAL	2	"CRIP3,ZNF318"
TCGA.AG.A014.01A	6	43479857	43480472	2	2.5402	LARGE-GAIN	FOCAL	1	YIPF3
TCGA.AG.3906.01A	6	43523531	43536370	8	0.7234	LARGE-GAIN	FOCAL	1	XPO5
TCGA.AG.3891.01A	6	43533339	43554997	11	0.737	LARGE-GAIN	FOCAL	2	"POLH,XPO5"
TCGA.AG.3906.01A	6	43538220	43554997	8	1.1688	LARGE-GAIN	FOCAL	2	"POLH,XPO5"
TCGA.CK.5914.01A	6	44134434	44151382	17	1.1452	LARGE-GAIN	FOCAL	1	CAPN11
TCGA.AG.A00C.01A	6	44216319	44219457	7	0.9588	LARGE-GAIN	FOCAL	1	HSP90AB1
TCGA.AG.3906.01A	6	44217097	44255259	20	0.8681	LARGE-GAIN	FOCAL	5	"HSP90AB1,NFKBIE,SLC35B2,TCTE1,TMEM151B"
TCGA.AA.A00D.01A	6	44355497	44364031	5	0.7175	LARGE-GAIN	FOCAL	1	CDC5L
TCGA.AA.A00N.01A	6	44376130	45296361	22	0.7432	LARGE-GAIN	FOCAL	3	"CDC5L,RUNX2,SUPT3H"
TCGA.DC.4745	6	45019736	45536358	98	0.8296	LARGE-GAIN	FOCAL	2	"RUNX2,SUPT3H"
TCGA.AG.A01W.01A	6	45181611	45404340	6	0.7383	LARGE-GAIN	FOCAL	2	"RUNX2,SUPT3H"
TCGA.AA.A00N.01A	6	45459636	46047398	10	1.3745	LARGE-GAIN	FOCAL	2	"CLIC5,RUNX2"
TCGA.AA.A01Q.01A	6	45479966	45881916	5	0.7917	LARGE-GAIN	FOCAL	2	"CLIC5,RUNX2"
TCGA.AG.3909.01A	6	45479966	46047398	9	0.7401	LARGE-GAIN	FOCAL	2	"CLIC5,RUNX2"
TCGA.AA.A00N.01A	6	46190827	46593102	11	0.8071	LARGE-GAIN	FOCAL	2	"CYP39A1,RCAN2"
TCGA.AA.A004.01A	6	46684071	47647785	74	0.8079	LARGE-GAIN	FOCAL	8	"ADGRF1,ADGRF2,ADGRF5,ANKRD66,CD2AP,MEP1A,PLA2G7,TNFRSF21"
TCGA.AG.A01W.01A	6	46763795	46768299	5	0.9744	LARGE-GAIN	FOCAL	1	MEP1A
TCGA.DM.A1HB	6	47132113	47142492	9	1.2408	LARGE-GAIN	FOCAL	0	None
TCGA.EI.6511	6	47677885	49150209	386	0.8551	LARGE-GAIN	FOCAL	3	"ADGRF4,OPN5,PTCHD4"
TCGA.AA.A00N.01A	6	49660437	50016213	29	0.7313	LARGE-GAIN	FOCAL	9	"CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,PGK2"
TCGA.CK.5914.01A	6	50825001	52137057	83	0.8362	LARGE-GAIN	FOCAL	4	"IL17A,IL17F,MCM3,PKHD1"
TCGA.AA.A00N.01A	6	51483857	51720649	19	0.8634	LARGE-GAIN	FOCAL	1	PKHD1
TCGA.AA.A00N.01A	6	51882167	51923079	19	1.2801	LARGE-GAIN	FOCAL	1	PKHD1
TCGA.AA.A00N.01A	6	52009101	52129334	8	1.2883	LARGE-GAIN	FOCAL	3	"IL17A,IL17F,MCM3"
TCGA.CK.5914.01A	6	52550726	52622601	7	1.2445	LARGE-GAIN	FOCAL	2	"GSTA2,TMEM14A"
TCGA.AA.A00F.01A	6	52696597	52705469	6	0.8416	LARGE-GAIN	FOCAL	1	GSTA5
TCGA.CK.5914.01A	6	52705469	52770493	7	0.9857	LARGE-GAIN	FOCAL	2	"GSTA3,GSTA5"
TCGA.AA.A010.01A	6	52993067	52998821	4	0.9969	LARGE-GAIN	FOCAL	1	GCM1
TCGA.AA.A00N.01A	6	52993067	53140919	10	0.8147	LARGE-GAIN	FOCAL	2	"ELOVL5,GCM1"
TCGA.AA.A00N.01A	6	53363512	53373913	8	0.7678	LARGE-GAIN	FOCAL	1	GCLC
TCGA.AA.A010.01A	6	53409253	53989302	22	0.9287	LARGE-GAIN	FOCAL	4	"GCLC,KLHL31,LRRC1,MLIP"
TCGA.AG.4021	6	53464356	54429181	385	1.0154	LARGE-GAIN	FOCAL	4	"KLHL31,LRRC1,MLIP,TINAG"
TCGA.AA.A00N.01A	6	53660013	56566623	187	0.7412	LARGE-GAIN	FOCAL	10	"BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,LRRC1,MLIP,TINAG"
TCGA.CK.5914.01A	6	53769127	55198556	43	0.9233	LARGE-GAIN	FOCAL	6	"FAM83B,GFRAL,HCRTR2,LRRC1,MLIP,TINAG"
TCGA.AZ.4684.01A	6	53883802	56462488	136	0.7277	LARGE-GAIN	FOCAL	9	"BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,MLIP,TINAG"
TCGA.AA.A02H.01A	6	54013793	56323801	82	0.7566	LARGE-GAIN	FOCAL	9	"BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,MLIP,TINAG"
TCGA.AG.4021	6	54434455	57032881	727	1.4934	LARGE-GAIN	FOCAL	10	"BEND6,BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,KIAA1586,ZNF451"
TCGA.CK.5914.01A	6	55443736	55942252	20	1.2236	LARGE-GAIN	FOCAL	3	"BMP5,COL21A1,HMGCLL1"
TCGA.F5.6811.01A	6	56039978	56050211	6	0.7237	LARGE-GAIN	FOCAL	1	COL21A1
TCGA.AA.A02H.01A	6	56356976	56422075	28	0.7836	LARGE-GAIN	FOCAL	1	DST
TCGA.CK.5914.01A	6	56362146	56391121	13	1.0367	LARGE-GAIN	FOCAL	1	DST
TCGA.CK.5914.01A	6	56420106	56491967	29	0.6784	LARGE-GAIN	FOCAL	1	DST
TCGA.AA.A02H.01A	6	56433230	56443565	6	0.6901	LARGE-GAIN	FOCAL	1	DST
TCGA.AA.A02H.01A	6	56456928	56467632	7	1.0465	LARGE-GAIN	FOCAL	1	DST
TCGA.AZ.4684.01A	6	56463227	56470814	6	2.2035	LARGE-GAIN	FOCAL	1	DST
TCGA.AA.3509.01A	6	56463227	56475178	8	1.793	LARGE-GAIN	FOCAL	1	DST
TCGA.AA.A010.01A	6	56491967	56500338	11	0.9963	LARGE-GAIN	FOCAL	1	DST
TCGA.AA.A00N.01A	6	57244656	62887053	16	0.8719	LARGE-GAIN	FOCAL	3	"KHDRBS2,MTRNR2L9,PRIM2"
TCGA.CK.5914.01A	6	57244656	62887053	17	0.7624	LARGE-GAIN	FOCAL	3	"KHDRBS2,MTRNR2L9,PRIM2"
TCGA.DC.4745	6	57256869	58069871	90	0.7339	LARGE-GAIN	FOCAL	1	PRIM2
TCGA.AF.A56K	6	58637406	58652579	3	1.3767	LARGE-GAIN	FOCAL	0	None
TCGA.DC.4745	6	58774715	62362455	75	0.8605	LARGE-GAIN	FOCAL	1	MTRNR2L9
TCGA.CA.6719	6	62393691	62925641	114	1.5357	LARGE-GAIN	FOCAL	1	KHDRBS2
TCGA.CA.6719	6	62931835	63069945	39	1.2911	LARGE-GAIN	FOCAL	1	KHDRBS2
TCGA.F4.6459	6	63250795	63543928	62	0.7762	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6459	6	63547378	63769488	32	1.1905	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3860	6	63665145	65186775	254	1.0139	LARGE-GAIN	FOCAL	4	"EYS,LGSN,PHF3,PTP4A1"
TCGA.F4.6459	6	63769552	64533999	132	0.8925	LARGE-GAIN	FOCAL	4	"EYS,LGSN,PHF3,PTP4A1"
TCGA.G4.6294	6	64315685	64896963	94	0.8338	LARGE-GAIN	FOCAL	2	"EYS,PHF3"
TCGA.AA.A00N.01A	6	64389883	70462112	97	0.8793	LARGE-GAIN	FOCAL	5	"ADGRB3,EYS,LMBRD1,LOC441155,PHF3"
TCGA.CK.5914.01A	6	64401600	70972927	160	0.7376	LARGE-GAIN	FOCAL	7	"ADGRB3,COL19A1,COL9A1,EYS,LMBRD1,LOC441155,PHF3"
TCGA.AZ.4684.01A	6	64791702	70447773	59	1.1035	LARGE-GAIN	FOCAL	4	"ADGRB3,EYS,LMBRD1,LOC441155"
TCGA.AA.3860	6	65187045	66838430	507	0.7177	LARGE-GAIN	FOCAL	2	"EYS,LOC441155"
TCGA.AA.3861.01A	6	65327276	65767470	13	1.6368	LARGE-GAIN	FOCAL	1	EYS
TCGA.AA.3860	6	66847972	68542694	563	0.9913	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3655	6	67268633	68717032	472	0.7713	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3860	6	68544236	69736776	352	1.3386	LARGE-GAIN	FOCAL	1	ADGRB3
TCGA.AG.3584	6	68921176	69748190	247	0.9659	LARGE-GAIN	FOCAL	1	ADGRB3
TCGA.AA.3860	6	69747027	72590077	919	1.0708	LARGE-GAIN	FOCAL	9	"ADGRB3,B3GAT2,COL19A1,COL9A1,FAM135A,LMBRD1,OGFRL1,SDHAF4,SMAP1"
TCGA.AA.A00N.01A	6	70733445	70964616	47	0.9581	LARGE-GAIN	FOCAL	2	"COL19A1,COL9A1"
TCGA.CK.5914.01A	6	71162143	71232154	9	1.0498	LARGE-GAIN	FOCAL	1	FAM135A
TCGA.AA.A00N.01A	6	71162143	71237978	11	0.8704	LARGE-GAIN	FOCAL	1	FAM135A
TCGA.AA.A00N.01A	6	71482982	71665515	13	1.0148	LARGE-GAIN	FOCAL	2	"B3GAT2,SMAP1"
TCGA.CK.5914.01A	6	71501357	71665515	12	1.0976	LARGE-GAIN	FOCAL	2	"B3GAT2,SMAP1"
TCGA.AA.A00N.01A	6	72086597	73843567	47	0.7579	LARGE-GAIN	FOCAL	2	"KCNQ5,RIMS1"
TCGA.AG.A01W.01A	6	73016708	73040719	10	0.7226	LARGE-GAIN	FOCAL	1	RIMS1
TCGA.AG.A01W.01A	6	73164631	73166873	3	1.0602	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	6	74019226	74192123	38	0.8645	LARGE-GAIN	FOCAL	7	"DDX43,DPPA5,KHDC1,KHDC3L,MB21D1,MTO1,OOEP"
TCGA.AG.3906.01A	6	74304772	74325001	4	1.2899	LARGE-GAIN	FOCAL	1	SLC17A5
TCGA.AG.3891.01A	6	74304772	74346286	7	0.7615	LARGE-GAIN	FOCAL	1	SLC17A5
TCGA.A6.3808.01A	6	74363466	76386772	121	0.8145	LARGE-GAIN	FOCAL	7	"CD109,COL12A1,COX7A2,FILIP1,SENP6,SLC17A5,TMEM30A"
TCGA.AA.A00N.01A	6	74432887	74517789	23	0.74	LARGE-GAIN	FOCAL	1	CD109
TCGA.AA.A02H.01A	6	74477748	75847988	55	0.7002	LARGE-GAIN	FOCAL	2	"CD109,COL12A1"
TCGA.CK.5914.01A	6	74519677	75794904	8	1.0409	LARGE-GAIN	FOCAL	2	"CD109,COL12A1"
TCGA.AA.A010.01A	6	75794904	75811662	10	0.9666	LARGE-GAIN	FOCAL	1	COL12A1
TCGA.CK.5914.01A	6	75818682	75890654	38	0.9439	LARGE-GAIN	FOCAL	1	COL12A1
TCGA.AG.A01N.01A	6	75825451	75865935	31	0.7049	LARGE-GAIN	FOCAL	1	COL12A1
TCGA.AA.A00N.01A	6	75828712	75839779	10	0.8223	LARGE-GAIN	FOCAL	1	COL12A1
TCGA.AA.A00N.01A	6	75840521	75854991	11	1.2882	LARGE-GAIN	FOCAL	1	COL12A1
TCGA.AA.A02H.01A	6	75854991	75965768	26	0.9639	LARGE-GAIN	FOCAL	3	"COL12A1,COX7A2,TMEM30A"
TCGA.AA.A00N.01A	6	75855811	75890654	12	0.7197	LARGE-GAIN	FOCAL	1	COL12A1
TCGA.A6.3808.01A	6	76425073	76582890	20	0.6897	LARGE-GAIN	FOCAL	2	"MYO6,SENP6"
TCGA.AZ.4684.01A	6	76618186	78172436	23	0.6781	LARGE-GAIN	FOCAL	3	"HTR1B,IMPG1,MYO6"
TCGA.AA.A02H.01A	6	76633308	76717111	8	1.2111	LARGE-GAIN	FOCAL	1	IMPG1
TCGA.AA.A00N.01A	6	79577262	79735648	34	1.0416	LARGE-GAIN	FOCAL	2	"IRAK1BP1,PHIP"
TCGA.AZ.4684.01A	6	79577262	80912791	84	0.9991	LARGE-GAIN	FOCAL	9	"BCKDHB,C6orf7,ELOVL4,HMGN3,IRAK1BP1,LCA5,PHIP,SH3BGRL2,TTK"
TCGA.AA.3509.01A	6	79595029	80912791	83	0.8577	LARGE-GAIN	FOCAL	9	"BCKDHB,C6orf7,ELOVL4,HMGN3,IRAK1BP1,LCA5,PHIP,SH3BGRL2,TTK"
TCGA.AA.A02H.01A	6	80196730	80626303	11	0.7697	LARGE-GAIN	FOCAL	4	"C6orf7,ELOVL4,LCA5,SH3BGRL2"
TCGA.AA.A02H.01A	6	80724148	80741159	5	0.8138	LARGE-GAIN	FOCAL	1	TTK
TCGA.AG.A01N.01A	6	80732014	80838812	14	0.7506	LARGE-GAIN	FOCAL	2	"BCKDHB,TTK"
TCGA.AA.A02H.01A	6	80744651	80838812	10	1.3066	LARGE-GAIN	FOCAL	2	"BCKDHB,TTK"
TCGA.AG.A01W.01A	6	80801382	80806603	5	0.8447	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	6	80816380	80982824	10	1.1665	LARGE-GAIN	FOCAL	1	BCKDHB
TCGA.AA.A00N.01A	6	83806646	83863561	31	0.8553	LARGE-GAIN	FOCAL	1	DOPEY1
TCGA.DM.A28M.01A	6	83828560	83832565	5	2.0903	LARGE-GAIN	FOCAL	1	DOPEY1
TCGA.CK.5914.01A	6	83831608	83843855	9	1.0067	LARGE-GAIN	FOCAL	1	DOPEY1
TCGA.AA.A02H.01A	6	83838629	83845311	5	1.4053	LARGE-GAIN	FOCAL	1	DOPEY1
TCGA.AG.A01W.01A	6	83895329	83906400	9	0.7089	LARGE-GAIN	FOCAL	2	"PGM3,RWDD2A"
TCGA.AA.A00N.01A	6	83933481	84375116	37	0.8664	LARGE-GAIN	FOCAL	3	"ME1,PRSS35,SNAP91"
TCGA.A6.3808.01A	6	84375116	84935992	52	1.1758	LARGE-GAIN	FOCAL	5	"CEP162,CYB5R4,MRAP2,RIPPLY2,SNAP91"
TCGA.AA.A00N.01A	6	84618692	84836070	19	0.7934	LARGE-GAIN	FOCAL	3	"CEP162,CYB5R4,MRAP2"
TCGA.DM.A28H	6	84945498	85988428	409	1.0947	LARGE-GAIN	FOCAL	1	TBX18
TCGA.AA.3867	6	85764860	85766484	3	1.0297	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3810.01A	6	88853563	90121548	64	0.9075	LARGE-GAIN	FOCAL	9	"CNR1,GABRR1,GABRR2,PM20D2,PNRC1,RNGTT,RRAGD,SRSF12,UBE2J1"
TCGA.CK.5914.01A	6	89322391	89616035	12	0.8435	LARGE-GAIN	FOCAL	1	RNGTT
TCGA.AA.A00N.01A	6	89888471	90024720	19	0.8671	LARGE-GAIN	FOCAL	2	"GABRR1,GABRR2"
TCGA.AA.A010.01A	6	89974080	90009429	7	0.977	LARGE-GAIN	FOCAL	1	GABRR2
TCGA.AA.A010.01A	6	90121548	90361868	26	0.8337	LARGE-GAIN	FOCAL	4	"ANKRD6,LYRM2,MDN1,RRAGD"
TCGA.AA.A00N.01A	6	90276654	90333553	11	1.0155	LARGE-GAIN	FOCAL	1	ANKRD6
TCGA.A6.3810.01A	6	90276654	90661367	131	1.5005	LARGE-GAIN	FOCAL	6	"ANKRD6,BACH2,CASP8AP2,GJA10,LYRM2,MDN1"
TCGA.CK.5914.01A	6	90360404	90368292	8	1.0494	LARGE-GAIN	FOCAL	1	MDN1
TCGA.AA.A00N.01A	6	90363835	90400353	30	0.8118	LARGE-GAIN	FOCAL	1	MDN1
TCGA.AA.A010.01A	6	90381910	90409772	26	0.8173	LARGE-GAIN	FOCAL	1	MDN1
TCGA.CK.5914.01A	6	90397022	90452830	37	0.8536	LARGE-GAIN	FOCAL	1	MDN1
TCGA.AA.A00N.01A	6	90402193	90405284	3	1.9618	LARGE-GAIN	FOCAL	1	MDN1
TCGA.AA.A00N.01A	6	90406041	90529178	58	0.7429	LARGE-GAIN	FOCAL	1	MDN1
TCGA.AA.A00N.01A	6	90642145	91245991	10	1.0108	LARGE-GAIN	FOCAL	2	"BACH2,MAP3K7"
TCGA.AA.A01K.01A	6	90659937	90661367	2	5.0844	LARGE-GAIN	FOCAL	1	BACH2
TCGA.CK.5914.01A	6	91296446	94067933	15	0.8456	LARGE-GAIN	FOCAL	2	"EPHA7,MAP3K7"
TCGA.AA.A00N.01A	6	100368765	105280888	90	0.6834	LARGE-GAIN	FOCAL	5	"ASCC3,GRIK2,HACE1,MCHR2,SIM1"
TCGA.AA.3509.01A	6	100960536	105239340	63	0.7718	LARGE-GAIN	FOCAL	3	"ASCC3,GRIK2,HACE1"
TCGA.AZ.4684.01A	6	100960536	105239340	63	0.9748	LARGE-GAIN	FOCAL	3	"ASCC3,GRIK2,HACE1"
TCGA.CK.5914.01A	6	100988028	102516172	53	0.796	LARGE-GAIN	FOCAL	2	"ASCC3,GRIK2"
TCGA.AG.3906.01A	6	105564528	105609342	8	0.7779	LARGE-GAIN	FOCAL	2	"BVES,POPDC3"
TCGA.AG.3906.01A	6	107954717	107955661	2	1.5496	LARGE-GAIN	FOCAL	1	SOBP
TCGA.CK.5914.01A	6	108029020	108234514	23	0.7054	LARGE-GAIN	FOCAL	2	"SCML4,SEC63"
TCGA.A6.3808.01A	6	108070846	108222557	11	1.907	LARGE-GAIN	FOCAL	2	"SCML4,SEC63"
TCGA.AA.3509.01A	6	108192860	108224011	9	0.7956	LARGE-GAIN	FOCAL	1	SEC63
TCGA.AA.3509.01A	6	109319679	109476946	12	1.263	LARGE-GAIN	FOCAL	2	"CEP57L1,SESN1"
TCGA.AZ.4684.01A	6	109319679	109476946	12	1.454	LARGE-GAIN	FOCAL	2	"CEP57L1,SESN1"
TCGA.AA.3861.01A	6	109466383	109665279	11	1.8471	LARGE-GAIN	FOCAL	2	"CEP57L1,LOC100996634"
TCGA.AA.3862.01A	6	109466383	109665279	11	1.8718	LARGE-GAIN	FOCAL	2	"CEP57L1,LOC100996634"
TCGA.AA.A02K.01A	6	109796543	109797937	3	0.7017	LARGE-GAIN	FOCAL	1	ZBTB24
TCGA.A6.3808.01A	6	109837058	111208655	108	0.7518	LARGE-GAIN	FOCAL	10	"AK9,AMD1,CDC40,CDK19,DDO,FIG4,GPR6,METTL24,SLC22A16,WASF1"
TCGA.AG.3906.01A	6	111280315	111346627	14	0.6901	LARGE-GAIN	FOCAL	2	"GTF3C6,RPF2"
TCGA.AA.A00N.01A	6	111621190	111714026	28	0.7067	LARGE-GAIN	FOCAL	1	REV3L
TCGA.AA.A00N.01A	6	111880557	112575000	81	0.7867	LARGE-GAIN	FOCAL	6	"FAM229B,FYN,LAMA4,TRAF3IP2,TUBE1,WISP3"
TCGA.CK.5914.01A	6	112430588	112537532	40	0.9063	LARGE-GAIN	FOCAL	1	LAMA4
TCGA.AG.A015.01A	6	112452119	112465986	11	0.8139	LARGE-GAIN	FOCAL	1	LAMA4
TCGA.AG.A016.01A	6	112453928	112465986	10	0.8421	LARGE-GAIN	FOCAL	1	LAMA4
TCGA.AA.3979	6	114051374	114071719	13	0.8358	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	6	117281178	117282394	6	1.127	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	6	118024751	118886654	23	0.8666	LARGE-GAIN	FOCAL	4	"CEP85L,NUS1,PLN,SLC35F1"
TCGA.DM.A1HB	6	118114397	118124788	7	0.9149	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	6	118350309	118368338	8	1.2178	LARGE-GAIN	FOCAL	1	SLC35F1
TCGA.AA.A00F.01A	6	119238677	119390164	5	0.7235	LARGE-GAIN	FOCAL	2	"FAM184A,MCM9"
TCGA.AA.A00N.01A	6	119399259	121631873	40	0.7601	LARGE-GAIN	FOCAL	3	"FAM184A,MAN1A1,TBC1D32"
TCGA.AA.A00N.01A	6	122752572	123046255	14	0.8159	LARGE-GAIN	FOCAL	3	"HSF2,PKIB,SERINC1"
TCGA.CK.5914.01A	6	123369728	125598209	69	0.7605	LARGE-GAIN	FOCAL	6	"CLVS2,HDDC2,NKAIN2,RNF217,TPD52L1,TRDN"
TCGA.AA.A00F.01A	6	126072887	126075595	2	1.2607	LARGE-GAIN	FOCAL	1	HEY2
TCGA.AA.A00N.01A	6	127898302	128313740	23	0.7833	LARGE-GAIN	FOCAL	3	"C6orf58,PTPRK,THEMIS"
TCGA.CK.5914.01A	6	128031056	128718662	42	0.8926	LARGE-GAIN	FOCAL	2	"PTPRK,THEMIS"
TCGA.AA.A00N.01A	6	128388643	129380882	18	0.8359	LARGE-GAIN	FOCAL	2	"LAMA2,PTPRK"
TCGA.CK.5914.01A	6	129513788	129601151	7	0.7526	LARGE-GAIN	FOCAL	1	LAMA2
TCGA.CK.5914.01A	6	129649393	131222094	107	0.8012	LARGE-GAIN	FOCAL	8	"ARHGAP18,EPB41L2,L3MBTL3,LAMA2,SAMD3,SMLR1,TMEM200A,TMEM244"
TCGA.AG.3594	6	131084144	131089994	3	1.6894	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	6	131486199	131937007	37	0.852	LARGE-GAIN	FOCAL	3	"AKAP7,ARG1,MED23"
TCGA.CK.5914.01A	6	131949070	132014610	15	0.8378	LARGE-GAIN	FOCAL	2	"ENPP3,MED23"
TCGA.AA.3861.01A	6	132021601	132032019	6	2.612	LARGE-GAIN	FOCAL	3	"CTAGE9,ENPP3,OR2A4"
TCGA.AA.3862.01A	6	132021601	132032019	6	2.304	LARGE-GAIN	FOCAL	3	"CTAGE9,ENPP3,OR2A4"
TCGA.CK.5914.01A	6	132045107	132207654	31	0.7495	LARGE-GAIN	FOCAL	2	"ENPP1,ENPP3"
TCGA.CK.5914.01A	6	132618241	132649502	8	0.685	LARGE-GAIN	FOCAL	1	MOXD1
TCGA.CK.5914.01A	6	133595836	134373465	28	0.7511	LARGE-GAIN	FOCAL	4	"EYA4,SLC2A12,TBPL1,TCF21"
TCGA.A6.6648	6	134467723	134536716	19	0.6885	LARGE-GAIN	FOCAL	1	SGK1
TCGA.CK.5914.01A	6	135287440	135323844	13	1.2352	LARGE-GAIN	FOCAL	1	HBS1L
TCGA.AZ.4614	6	135495225	135627368	58	0.972	LARGE-GAIN	FOCAL	2	"AHI1,MYB"
TCGA.AG.3906.01A	6	135507024	135516839	8	0.8071	LARGE-GAIN	FOCAL	1	MYB
TCGA.CK.5914.01A	6	135538950	135778613	24	0.7514	LARGE-GAIN	FOCAL	2	"AHI1,MYB"
TCGA.CK.5914.01A	6	136173051	136598976	29	0.8209	LARGE-GAIN	FOCAL	3	"BCLAF1,MTFR2,PDE7B"
TCGA.AA.3509.01A	6	136582161	136593074	4	1.6679	LARGE-GAIN	FOCAL	1	BCLAF1
TCGA.AZ.4684.01A	6	136582161	136593074	4	1.8293	LARGE-GAIN	FOCAL	1	BCLAF1
TCGA.AA.A010.01A	6	137536333	137814498	3	1.807	LARGE-GAIN	FOCAL	2	"IFNGR1,OLIG3"
TCGA.CK.5914.01A	6	138202139	138601114	19	0.7669	LARGE-GAIN	FOCAL	4	"ARFGEF3,PBOV1,PERP,TNFAIP3"
TCGA.AA.A010.01A	6	138576551	138657400	24	1.0228	LARGE-GAIN	FOCAL	1	ARFGEF3
TCGA.AZ.4684.01A	6	142525063	143825020	66	0.7065	LARGE-GAIN	FOCAL	7	"ADAT2,ADGRG6,AIG1,FUCA2,HIVEP2,PEX3,VTA1"
TCGA.CK.5914.01A	6	142711341	143074766	22	0.9451	LARGE-GAIN	FOCAL	2	"ADGRG6,HIVEP2"
TCGA.AA.A010.01A	6	142764447	143095611	11	0.7324	LARGE-GAIN	FOCAL	2	"ADGRG6,HIVEP2"
TCGA.AA.A00N.01A	6	143832501	144507718	37	0.7586	LARGE-GAIN	FOCAL	7	"FUCA2,LTV1,PHACTR2,PLAGL1,SF3B5,STX11,ZC2HC1B"
TCGA.CK.5914.01A	6	144832032	145823607	46	0.7753	LARGE-GAIN	FOCAL	1	UTRN
TCGA.AA.A00N.01A	6	144837925	146056287	46	0.8769	LARGE-GAIN	FOCAL	2	"EPM2A,UTRN"
TCGA.AA.A017.01A	6	145103031	145161831	13	0.7487	LARGE-GAIN	FOCAL	1	UTRN
TCGA.A6.3808.01A	6	145124120	146248273	39	1.3958	LARGE-GAIN	FOCAL	4	"EPM2A,FBXO30,SHPRH,UTRN"
TCGA.AZ.4684.01A	6	145124120	148593402	128	0.7772	LARGE-GAIN	FOCAL	9	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SAMD5,SHPRH,STXBP5,UTRN"
TCGA.AA.A017.01A	6	146125461	146243377	14	0.9491	LARGE-GAIN	FOCAL	2	"FBXO30,SHPRH"
TCGA.CK.5914.01A	6	146185407	146256001	20	1.0259	LARGE-GAIN	FOCAL	1	SHPRH
TCGA.CK.5914.01A	6	146956462	147022030	12	0.951	LARGE-GAIN	FOCAL	1	ADGB
TCGA.AA.A00N.01A	6	146956462	147106709	31	0.7264	LARGE-GAIN	FOCAL	1	ADGB
TCGA.AG.3906.01A	6	150094190	150117505	4	1.2094	LARGE-GAIN	FOCAL	1	PCMT1
TCGA.CK.5914.01A	6	150535820	151130728	16	0.7226	LARGE-GAIN	FOCAL	3	"IYD,PLEKHG1,PPP1R14C"
TCGA.AA.A00N.01A	6	150569848	151152281	20	0.7065	LARGE-GAIN	FOCAL	3	"IYD,PLEKHG1,PPP1R14C"
TCGA.AA.A010.01A	6	151226738	151646912	25	0.7516	LARGE-GAIN	FOCAL	2	"AKAP12,MTHFD1L"
TCGA.CK.5914.01A	6	151239662	151646912	23	0.7001	LARGE-GAIN	FOCAL	2	"AKAP12,MTHFD1L"
TCGA.AG.3906.01A	6	151766394	151785539	5	0.9053	LARGE-GAIN	FOCAL	2	"ARMT1,RMND1"
TCGA.AA.A00N.01A	6	151857425	152605066	73	0.8017	LARGE-GAIN	FOCAL	3	"CCDC170,ESR1,SYNE1"
TCGA.CK.5914.01A	6	152457723	152534698	21	0.8641	LARGE-GAIN	FOCAL	1	SYNE1
TCGA.CK.5914.01A	6	152590260	152605066	4	0.8276	LARGE-GAIN	FOCAL	1	SYNE1
TCGA.AA.A00N.01A	6	152644641	153078157	87	0.7658	LARGE-GAIN	FOCAL	3	"MYCT1,SYNE1,VIP"
TCGA.AG.A01W.01A	6	152845863	152851187	3	1.1545	LARGE-GAIN	FOCAL	1	SYNE1
TCGA.AA.A00N.01A	6	153345370	154544244	19	0.7865	LARGE-GAIN	FOCAL	3	"IPCEF1,OPRM1,RGS17"
TCGA.AA.A00N.01A	6	154727460	155561647	50	0.7169	LARGE-GAIN	FOCAL	3	"CNKSR3,SCAF8,TIAM2"
TCGA.AZ.4684.01A	6	155124631	155126456	2	1.9689	LARGE-GAIN	FOCAL	1	SCAF8
TCGA.AA.A00N.01A	6	155596812	157521898	41	0.8363	LARGE-GAIN	FOCAL	4	"ARID1B,CLDN20,NOX3,TFB1M"
TCGA.AA.3930.01A	6	157527302	157527899	2	2.4637	LARGE-GAIN	FOCAL	1	ARID1B
TCGA.AA.3872	6	157738257	157740656	3	1.9467	LARGE-GAIN	FOCAL	1	TMEM242
TCGA.DM.A1HB	6	157956507	157979922	8	1.2754	LARGE-GAIN	FOCAL	1	ZDHHC14
TCGA.AA.A00N.01A	6	158834045	158902099	7	1.2902	LARGE-GAIN	FOCAL	1	TULP4
TCGA.AG.3909.01A	6	158834045	158902099	7	0.8812	LARGE-GAIN	FOCAL	1	TULP4
TCGA.AA.A010.01A	6	158834045	158923681	13	0.8385	LARGE-GAIN	FOCAL	1	TULP4
TCGA.CK.5914.01A	6	159672325	159692309	7	0.9128	LARGE-GAIN	FOCAL	1	FNDC1
TCGA.CK.5914.01A	6	160963672	160978371	6	1.1273	LARGE-GAIN	FOCAL	1	LPA
TCGA.CK.5914.01A	6	160998128	161026027	11	1.9395	LARGE-GAIN	FOCAL	1	LPA
TCGA.CK.5914.01A	6	161027457	161162294	18	1.1712	LARGE-GAIN	FOCAL	2	"LPA,PLG"
TCGA.AD.6965	6	162155900	162165092	3	0.8287	LARGE-GAIN	FOCAL	1	PARK2
TCGA.EI.6883	6	162507689	162564053	24	0.7752	LARGE-GAIN	FOCAL	1	PARK2
TCGA.DM.A1HB	6	165510585	165520297	5	1.6836	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	6	165792681	165848678	12	0.854	LARGE-GAIN	FOCAL	1	PDE10A
TCGA.AA.A00N.01A	6	165792681	166571756	20	0.6828	LARGE-GAIN	FOCAL	2	"PDE10A,T"
TCGA.AA.A00F.01A	6	166733623	166743606	7	0.7822	LARGE-GAIN	FOCAL	1	SFT2D1
TCGA.AG.A00C.01A	6	167360098	167417715	7	0.7418	LARGE-GAIN	FOCAL	2	"FGFR1OP,RNASET2"
TCGA.AF.3914.01A	6	169620256	169629620	8	1.3219	LARGE-GAIN	FOCAL	1	THBS2
TCGA.AA.A01K.01A	6	169637218	169640495	3	3.4259	LARGE-GAIN	FOCAL	1	THBS2
TCGA.AA.A00F.01A	6	170103067	170160689	19	0.7167	LARGE-GAIN	FOCAL	4	"C6orf120,ERMARD,PHF10,TCTE3"
TCGA.AG.3906.01A	6	170114782	170118837	4	0.8222	LARGE-GAIN	FOCAL	1	PHF10
TCGA.AM.5820	6	170466299	170488008	6	0.7016	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3726	7	44407	65764	13	0.6828	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	7	44407	112403	40	0.7259	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5820	7	161441	704572	21	1.3056	LARGE-GAIN	FOCAL	4	"FAM20C,PDGFA,PRKAR1B,WI2-2373I1.2"
TCGA.AA.3977	7	181004	181653	3	0.7441	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5820	7	746916	1016947	44	0.8529	LARGE-GAIN	FOCAL	6	"ADAP1,COX19,DNAAF5,GET4,PRKAR1B,SUN1"
TCGA.AA.A00Z.01A	7	872099	926150	6	1.9938	LARGE-GAIN	FOCAL	2	"GET4,SUN1"
TCGA.AA.A01Q.01A	7	931863	966158	9	0.7431	LARGE-GAIN	FOCAL	2	"ADAP1,GET4"
TCGA.AM.5820	7	1036798	1162747	36	1.3059	LARGE-GAIN	FOCAL	3	"C7orf50,GPER1,GPR146"
TCGA.AM.5820	7	1311236	1433621	16	1.1145	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5820	7	1496879	1530435	5	2.0144	LARGE-GAIN	FOCAL	2	"INTS1,MICALL2"
TCGA.AM.5820	7	1530464	1806590	35	0.9975	LARGE-GAIN	FOCAL	5	"ELFN1,INTS1,MAFK,PSMG3,TMEM184A"
TCGA.AZ.6606	7	1812294	1817996	4	1.0463	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5820	7	1841890	2205908	87	1.1349	LARGE-GAIN	FOCAL	1	MAD1L1
TCGA.DM.A28F	7	1993373	1998250	3	1.8933	LARGE-GAIN	FOCAL	1	MAD1L1
TCGA.AM.5820	7	2206689	2524378	72	0.6921	LARGE-GAIN	FOCAL	7	"CHST12,EIF3B,FTSJ2,GRIFIN,MAD1L1,NUDT1,SNX8"
TCGA.AG.3906.01A	7	2309178	2409058	12	0.8872	LARGE-GAIN	FOCAL	2	"EIF3B,SNX8"
TCGA.AG.3891.01A	7	2317708	2412271	11	0.7933	LARGE-GAIN	FOCAL	2	"EIF3B,SNX8"
TCGA.AA.A00L.01A	7	2400298	2418998	16	1.1632	LARGE-GAIN	FOCAL	1	EIF3B
TCGA.AM.5820	7	2545486	2577780	6	1.5146	LARGE-GAIN	FOCAL	2	"BRAT1,LFNG"
TCGA.AA.A01K.01A	7	2608574	2611786	3	4.496	LARGE-GAIN	FOCAL	1	IQCE
TCGA.AG.3906.01A	7	2612990	2640985	11	1.1848	LARGE-GAIN	FOCAL	1	IQCE
TCGA.AM.5820	7	2643351	2789879	40	1.0476	LARGE-GAIN	FOCAL	4	"AMZ1,GNA12,IQCE,TTYH3"
TCGA.AG.4009.01A	7	2751927	4798644	78	0.8441	LARGE-GAIN	FOCAL	5	"AMZ1,CARD11,FOXK1,GNA12,SDK1"
TCGA.A6.3808.01A	7	2853894	2998076	27	0.9086	LARGE-GAIN	FOCAL	2	"CARD11,GNA12"
TCGA.CK.5914.01A	7	2987189	3658690	8	0.955	LARGE-GAIN	FOCAL	2	"CARD11,SDK1"
TCGA.AA.3518	7	3919541	3927041	5	1.3081	LARGE-GAIN	FOCAL	1	SDK1
TCGA.AM.5820	7	4156646	4311315	83	0.7552	LARGE-GAIN	FOCAL	1	SDK1
TCGA.AM.5820	7	4751839	4877538	22	0.9452	LARGE-GAIN	FOCAL	3	"AP5Z1,FOXK1,RADIL"
TCGA.AA.A00N.01A	7	4946976	4965056	6	1.1388	LARGE-GAIN	FOCAL	1	MMD2
TCGA.AG.3909.01A	7	4946976	4965056	6	1.2542	LARGE-GAIN	FOCAL	1	MMD2
TCGA.CK.5914.01A	7	4946976	4998564	7	0.9222	LARGE-GAIN	FOCAL	1	MMD2
TCGA.AG.4009.01A	7	4946976	5270414	24	0.8028	LARGE-GAIN	FOCAL	4	"MMD2,RBAK,RBAK-RBAKDN,WIPI2"
TCGA.AM.5820	7	5272176	5664056	69	0.8416	LARGE-GAIN	FOCAL	7	"ACTB,FBXL18,FSCN1,RNF216,SLC29A4,TNRC18,WIPI2"
TCGA.AG.A026	7	5584598	5605129	3	1.3365	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00L.01A	7	5642837	5944678	25	0.845	LARGE-GAIN	FOCAL	4	"CCZ1,FSCN1,OCM,RNF216"
TCGA.AG.A01W.01A	7	5745395	5758957	3	0.8548	LARGE-GAIN	FOCAL	1	RNF216
TCGA.AA.3939.01A	7	5923474	6026361	24	0.7645	LARGE-GAIN	FOCAL	5	"CCZ1,OCM,PMS2,RSPH10B,RSPH10B2"
TCGA.AA.3862.01A	7	5939878	6022403	24	2.6352	LARGE-GAIN	FOCAL	4	"CCZ1,PMS2,RSPH10B,RSPH10B2"
TCGA.AA.A00L.01A	7	5949605	6006442	16	1.2733	LARGE-GAIN	FOCAL	3	"CCZ1,RSPH10B,RSPH10B2"
TCGA.AA.A00L.01A	7	6022403	6513773	64	0.9033	LARGE-GAIN	FOCAL	10	"AIMP2,ANKRD61,CYTH3,DAGLB,EIF2AK1,FAM220A,KDELR2,PMS2,RAC1,USP42"
TCGA.AG.3906.01A	7	6094126	6198985	17	0.8969	LARGE-GAIN	FOCAL	2	"EIF2AK1,USP42"
TCGA.AG.A01W.01A	7	6155694	6177311	10	0.9804	LARGE-GAIN	FOCAL	1	USP42
TCGA.AG.3906.01A	7	6456206	6465587	3	1.3703	LARGE-GAIN	FOCAL	1	DAGLB
TCGA.AG.3906.01A	7	6639443	6641653	2	1.6281	LARGE-GAIN	FOCAL	1	C7orf26
TCGA.AA.A00Q.01A	7	6660761	6803519	6	1.3775	LARGE-GAIN	FOCAL	5	"RSPH10B,RSPH10B2,ZNF12,ZNF316,ZNF853"
TCGA.AA.A00L.01A	7	6730442	7283113	22	1.1247	LARGE-GAIN	FOCAL	5	"C1GALT1,CCZ1B,RSPH10B,RSPH10B2,ZNF12"
TCGA.AA.3666	7	6743096	7232919	117	0.7217	LARGE-GAIN	FOCAL	5	"C1GALT1,CCZ1B,RSPH10B,RSPH10B2,ZNF12"
TCGA.EI.6513	7	6775087	7588856	298	1.0736	LARGE-GAIN	FOCAL	5	"C1GALT1,CCZ1B,COL28A1,RSPH10B,RSPH10B2"
TCGA.CM.5864	7	6779269	6963658	12	1.3093	LARGE-GAIN	FOCAL	3	"CCZ1B,RSPH10B,RSPH10B2"
TCGA.AG.4009.01A	7	6797327	6844540	15	1.1948	LARGE-GAIN	FOCAL	3	"CCZ1B,RSPH10B,RSPH10B2"
TCGA.AA.3861.01A	7	6803519	7277848	22	1.7039	LARGE-GAIN	FOCAL	4	"C1GALT1,CCZ1B,RSPH10B,RSPH10B2"
TCGA.AA.3862.01A	7	6803519	7277848	16	2.2232	LARGE-GAIN	FOCAL	4	"C1GALT1,CCZ1B,RSPH10B,RSPH10B2"
TCGA.AA.3939.01A	7	6845555	6864063	7	0.8294	LARGE-GAIN	FOCAL	1	CCZ1B
TCGA.AA.A00N.01A	7	7273910	7483163	18	1.0472	LARGE-GAIN	FOCAL	2	"C1GALT1,COL28A1"
TCGA.CK.5914.01A	7	7277848	7483997	18	0.7133	LARGE-GAIN	FOCAL	2	"C1GALT1,COL28A1"
TCGA.AG.A01W.01A	7	7438565	7512101	14	0.7344	LARGE-GAIN	FOCAL	1	COL28A1
TCGA.AA.3967.01A	7	7528958	7612060	13	0.8736	LARGE-GAIN	FOCAL	2	"COL28A1,MIOS"
TCGA.CK.5914.01A	7	8124490	8275461	15	0.9177	LARGE-GAIN	FOCAL	2	"GLCCI1,ICA1"
TCGA.AA.3967.01A	7	8124490	11021991	23	0.7218	LARGE-GAIN	FOCAL	5	"GLCCI1,ICA1,NDUFA4,NXPH1,PHF14"
TCGA.AA.3941	7	8132005	8252260	80	0.7813	LARGE-GAIN	FOCAL	1	ICA1
TCGA.DY.A1DC	7	8263692	8268154	3	1.8875	LARGE-GAIN	FOCAL	1	ICA1
TCGA.DY.A1DC	7	8575993	8595327	12	1.5098	LARGE-GAIN	FOCAL	1	NXPH1
TCGA.DY.A1DC	7	8824846	8838716	9	1.3717	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	8941051	8946203	6	1.7256	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	9870470	9879909	11	1.5341	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	7	11053357	11486815	30	0.7688	LARGE-GAIN	FOCAL	2	"PHF14,THSD7A"
TCGA.AG.3909.01A	7	11091210	11632904	30	0.8845	LARGE-GAIN	FOCAL	2	"PHF14,THSD7A"
TCGA.AA.A00N.01A	7	11501590	11871342	10	1.5268	LARGE-GAIN	FOCAL	1	THSD7A
TCGA.A6.6648	7	11674376	11675279	4	0.8575	LARGE-GAIN	FOCAL	1	THSD7A
TCGA.DM.A0XF	7	11728733	11757440	20	1.1729	LARGE-GAIN	FOCAL	1	THSD7A
TCGA.DY.A1DC	7	11729481	11773516	24	1.4802	LARGE-GAIN	FOCAL	1	THSD7A
TCGA.AA.3695	7	13287994	13331149	18	0.7177	LARGE-GAIN	FOCAL	0	None
TCGA.D5.5539	7	14726095	15734820	402	0.7551	LARGE-GAIN	FOCAL	3	"AGMO,DGKB,MEOX2"
TCGA.AG.3906.01A	7	15425054	15433710	4	0.9899	LARGE-GAIN	FOCAL	1	AGMO
TCGA.AG.3909.01A	7	16704996	16793527	12	0.7292	LARGE-GAIN	FOCAL	2	"BZW2,TSPAN13"
TCGA.AA.A00N.01A	7	16713995	16745598	10	0.7626	LARGE-GAIN	FOCAL	1	BZW2
TCGA.CK.5914.01A	7	16713995	16793527	11	0.7812	LARGE-GAIN	FOCAL	2	"BZW2,TSPAN13"
TCGA.AA.3975	7	16806300	16811807	5	1.5824	LARGE-GAIN	FOCAL	1	TSPAN13
TCGA.DY.A1DC	7	17076416	17087850	10	1.8342	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	7	17362093	17890402	22	1.0818	LARGE-GAIN	FOCAL	2	"AHR,SNX13"
TCGA.CK.5914.01A	7	17861085	17890402	9	0.6824	LARGE-GAIN	FOCAL	1	SNX13
TCGA.AA.A00N.01A	7	17885171	20685340	75	0.8276	LARGE-GAIN	FOCAL	10	"ABCB5,FERD3L,HDAC9,ITGB8,MACC1,PRPS1L1,SNX13,TMEM196,TWIST1,TWISTNB"
TCGA.AA.3941	7	17964951	18066568	33	0.7783	LARGE-GAIN	FOCAL	2	"PRPS1L1,SNX13"
TCGA.AG.A01N.01A	7	18066418	18875043	20	0.8582	LARGE-GAIN	FOCAL	2	"HDAC9,PRPS1L1"
TCGA.CK.5914.01A	7	18674201	18868714	11	1.1538	LARGE-GAIN	FOCAL	1	HDAC9
TCGA.AG.3909.01A	7	18674201	19184466	21	0.9233	LARGE-GAIN	FOCAL	3	"FERD3L,HDAC9,TWIST1"
TCGA.DY.A1DC	7	18933109	18941623	8	1.3758	LARGE-GAIN	FOCAL	1	HDAC9
TCGA.AA.A010.01A	7	19737892	19813104	10	0.8386	LARGE-GAIN	FOCAL	2	"TMEM196,TWISTNB"
TCGA.AA.3967.01A	7	19737892	21469857	54	0.7024	LARGE-GAIN	FOCAL	7	"ABCB5,ITGB8,MACC1,SP4,SP8,TMEM196,TWISTNB"
TCGA.AA.A00L.01A	7	20406585	20441377	8	0.9987	LARGE-GAIN	FOCAL	1	ITGB8
TCGA.AA.A00L.01A	7	20721101	20823872	15	0.9803	LARGE-GAIN	FOCAL	2	"ABCB5,SP8"
TCGA.AG.3909.01A	7	21611374	22349541	105	0.923	LARGE-GAIN	FOCAL	3	"CDCA7L,DNAH11,RAPGEF5"
TCGA.AA.A00N.01A	7	21621471	22478087	110	0.8602	LARGE-GAIN	FOCAL	4	"CDCA7L,DNAH11,RAPGEF5,STEAP1B"
TCGA.CK.5914.01A	7	21788156	22270404	60	0.7801	LARGE-GAIN	FOCAL	3	"CDCA7L,DNAH11,RAPGEF5"
TCGA.AG.A01Y	7	22532985	22536723	3	1.4129	LARGE-GAIN	FOCAL	1	STEAP1B
TCGA.A6.2671	7	22772259	22782612	3	2.0303	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	7	22862249	23053493	13	0.7716	LARGE-GAIN	FOCAL	2	"FAM126A,TOMM7"
TCGA.AG.3909.01A	7	23775135	25198078	70	0.7882	LARGE-GAIN	FOCAL	7	"C7orf31,CYCS,DFNA5,MPP6,NPY,OSBPL3,STK31"
TCGA.AZ.4684.01A	7	23793883	24705578	26	1.1787	LARGE-GAIN	FOCAL	3	"MPP6,NPY,STK31"
TCGA.AA.A00Q.01A	7	24663279	24727020	11	0.7025	LARGE-GAIN	FOCAL	1	MPP6
TCGA.DM.A0XF	7	25897387	26199206	92	0.8445	LARGE-GAIN	FOCAL	1	NFE2L3
TCGA.AA.A00F.01A	7	25989495	26412065	23	0.8001	LARGE-GAIN	FOCAL	4	"CBX3,HNRNPA2B1,NFE2L3,SNX10"
TCGA.DY.A1DC	7	25991976	26053266	31	1.0099	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	7	26576324	26903919	17	0.8126	LARGE-GAIN	FOCAL	2	"C7orf71,SKAP2"
TCGA.AA.A00N.01A	7	26576324	26933368	17	0.8795	LARGE-GAIN	FOCAL	2	"C7orf71,SKAP2"
TCGA.AZ.4684.01A	7	26709668	26893689	9	1.6197	LARGE-GAIN	FOCAL	1	SKAP2
TCGA.AG.3909.01A	7	26709668	26903919	12	0.7767	LARGE-GAIN	FOCAL	1	SKAP2
TCGA.AG.4009.01A	7	26709668	26903919	12	0.7267	LARGE-GAIN	FOCAL	1	SKAP2
TCGA.AG.A014.01A	7	27194486	27238796	11	1.6328	LARGE-GAIN	FOCAL	5	"HOXA10,HOXA11,HOXA13,HOXA7,HOXA9"
TCGA.AF.3914.01A	7	27195854	27212940	6	0.8636	LARGE-GAIN	FOCAL	3	"HOXA10,HOXA7,HOXA9"
TCGA.AA.A00J.01A	7	27203180	27204449	2	4.9444	LARGE-GAIN	FOCAL	1	HOXA9
TCGA.CK.5914.01A	7	30671044	30739507	17	0.7085	LARGE-GAIN	FOCAL	2	"CRHR2,GARS"
TCGA.AA.A00N.01A	7	30825368	31920309	84	0.7379	LARGE-GAIN	FOCAL	8	"ADCYAP1R1,AQP1,CCDC129,FAM188B,GHRHR,NEUROD6,PDE1C,PPP1R17"
TCGA.CK.5914.01A	7	30830743	32338207	89	0.7245	LARGE-GAIN	FOCAL	8	"ADCYAP1R1,AQP1,CCDC129,FAM188B,GHRHR,NEUROD6,PDE1C,PPP1R17"
TCGA.DY.A1DC	7	31826094	31844139	8	1.2738	LARGE-GAIN	FOCAL	1	PDE1C
TCGA.F4.6460	7	32645511	32791566	19	0.8454	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00F.01A	7	32772542	33015938	7	0.7674	LARGE-GAIN	FOCAL	2	"FKBP9,KBTBD2"
TCGA.AA.A00Q.01A	7	32919030	33060850	15	0.7787	LARGE-GAIN	FOCAL	3	"FKBP9,KBTBD2,NT5C3A"
TCGA.AA.A010.01A	7	33035793	33102142	14	0.7427	LARGE-GAIN	FOCAL	2	"FKBP9,NT5C3A"
TCGA.AG.3906.01A	7	33134799	33140078	5	0.7057	LARGE-GAIN	FOCAL	1	RP9
TCGA.AA.A00N.01A	7	33296811	35029428	63	0.816	LARGE-GAIN	FOCAL	4	"BBS9,BMPER,DPY19L1,NPSR1"
TCGA.EI.6508	7	33552620	34689003	418	0.7542	LARGE-GAIN	FOCAL	2	"BBS9,BMPER"
TCGA.AA.3862.01A	7	34981340	35053142	15	2.3919	LARGE-GAIN	FOCAL	1	DPY19L1
TCGA.AA.3861.01A	7	34981340	35058100	17	1.8563	LARGE-GAIN	FOCAL	1	DPY19L1
TCGA.AG.A01W.01A	7	35673523	35879731	10	0.8239	LARGE-GAIN	FOCAL	2	"HERPUD2,SEPT7"
TCGA.G4.6294	7	35677520	36871449	463	1.1655	LARGE-GAIN	FOCAL	6	"ANLN,AOAH,EEPD1,HERPUD2,KIAA0895,SEPT7"
TCGA.DM.A28M.01A	7	35872361	35923458	6	1.4056	LARGE-GAIN	FOCAL	1	7-Sep
TCGA.AA.3509.01A	7	35872361	35943782	10	1.3424	LARGE-GAIN	FOCAL	1	7-Sep
TCGA.AZ.4684.01A	7	35872361	35943782	10	1.6653	LARGE-GAIN	FOCAL	1	7-Sep
TCGA.AG.4009.01A	7	36320697	36374628	9	0.9346	LARGE-GAIN	FOCAL	2	"EEPD1,KIAA0895"
TCGA.AG.4009.01A	7	36569973	37283902	35	0.857	LARGE-GAIN	FOCAL	2	"AOAH,ELMO1"
TCGA.AA.3930.01A	7	36657828	36677385	6	0.8109	LARGE-GAIN	FOCAL	1	AOAH
TCGA.AA.A00N.01A	7	36713485	36895124	4	1.7329	LARGE-GAIN	FOCAL	2	"AOAH,ELMO1"
TCGA.G4.6294	7	36871548	37854352	365	0.6926	LARGE-GAIN	FOCAL	2	"ELMO1,GPR141"
TCGA.AG.4009.01A	7	37779969	38268341	29	0.7637	LARGE-GAIN	FOCAL	5	"EPDR1,GPR141,NME8,SFRP4,STARD3NL"
TCGA.AA.A00F.01A	7	37947074	37953751	4	0.7783	LARGE-GAIN	FOCAL	1	SFRP4
TCGA.AA.3811	7	38209836	38424064	76	0.7203	LARGE-GAIN	FOCAL	3	"AMPH,STARD3NL,TARP"
TCGA.AA.3692	7	38287926	38331001	18	0.8607	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.3581	7	38290713	38340661	23	1.3989	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3544	7	38290713	38357074	30	1.8164	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3814	7	38290713	38366511	37	1.2003	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.3882	7	38290713	38366511	37	0.8594	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3679	7	38290713	38386790	43	1.18	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3695	7	38290713	38398046	44	0.7692	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3664	7	38290713	38404970	46	1.1755	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.4009.01A	7	38299659	38304898	3	1.267	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.A008.01A	7	38299659	38304898	3	0.6971	LARGE-GAIN	FOCAL	1	TARP
TCGA.A6.3807	7	38303119	38351974	28	1.0608	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.3902	7	38303119	38357322	30	0.8584	LARGE-GAIN	FOCAL	1	TARP
TCGA.AY.A8YK	7	38303119	38357322	29	1.7804	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3842	7	38303119	38358411	32	1.6328	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3548	7	38303119	38366511	34	1.6317	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3684	7	38303119	38366511	36	0.7808	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3819	7	38303119	38366511	35	1.1164	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3869	7	38303119	38366511	35	0.8048	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3971	7	38303119	38366511	33	1.5944	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.A02Y	7	38303119	38366511	36	1.4175	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3693	7	38303119	38386790	42	1.0142	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3966	7	38303119	38386790	41	0.9788	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.3591	7	38303119	38386790	42	1.0834	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3667	7	38303119	38398046	43	1.0078	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3688	7	38303119	38398046	43	1.0897	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.3592	7	38303119	38398046	43	1.613	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3696	7	38303119	38402495	44	1.0218	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3812	7	38303119	38402495	44	0.8954	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3666	7	38303119	38404970	45	0.9256	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3685	7	38303119	38404970	45	1.1139	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3841	7	38303119	38404970	45	1.1847	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3844	7	38303119	38424064	56	0.8275	LARGE-GAIN	FOCAL	2	"AMPH,TARP"
TCGA.AY.5543	7	38311097	38323484	5	1.6518	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3975	7	38311097	38348811	25	1.0128	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3529	7	38311097	38357322	28	1.0467	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.3901	7	38311097	38357322	28	1.1544	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3866	7	38311097	38362071	34	1.3673	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3858	7	38311097	38366511	35	0.9893	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3875	7	38311097	38366511	35	0.7645	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3680	7	38311097	38404970	44	0.9308	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3855	7	38311097	38404970	44	0.9206	LARGE-GAIN	FOCAL	1	TARP
TCGA.AA.3955	7	38311097	38404970	44	1.0535	LARGE-GAIN	FOCAL	1	TARP
TCGA.AG.3726	7	38319338	38335519	18	1.379	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3977	7	38329586	38366511	24	1.0972	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3807	7	38366511	38398046	8	1.0732	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	7	38424369	41739548	96	0.7146	LARGE-GAIN	FOCAL	9	"AMPH,CDK13,INHBA,MPLKIP,POU6F2,RALA,SUGCT,VPS41,YAE1D1"
TCGA.CI.6621	7	38603498	38624194	11	0.9487	LARGE-GAIN	FOCAL	1	AMPH
TCGA.AA.A01Q.01A	7	38948685	39605966	11	0.6913	LARGE-GAIN	FOCAL	2	"POU6F2,VPS41"
TCGA.AA.A00N.01A	7	42063017	42187818	8	1.6657	LARGE-GAIN	FOCAL	1	GLI3
TCGA.AG.4009.01A	7	42063017	42187818	8	0.7395	LARGE-GAIN	FOCAL	1	GLI3
TCGA.AG.A01W.01A	7	43413636	43456942	6	0.818	LARGE-GAIN	FOCAL	1	HECW1
TCGA.AG.4009.01A	7	44198608	44747164	76	0.7744	LARGE-GAIN	FOCAL	8	"CAMK2B,DDX56,GCK,NPC1L1,NUDCD3,OGDH,TMED4,YKT6"
TCGA.AG.3909.01A	7	44294072	44578414	26	1.0778	LARGE-GAIN	FOCAL	3	"CAMK2B,NPC1L1,NUDCD3"
TCGA.CK.5914.01A	7	44425558	44605539	24	0.8336	LARGE-GAIN	FOCAL	3	"DDX56,NPC1L1,NUDCD3"
TCGA.AA.A00N.01A	7	44425558	44607680	26	1.1393	LARGE-GAIN	FOCAL	3	"DDX56,NPC1L1,NUDCD3"
TCGA.AA.A010.01A	7	44425558	44747164	57	0.8942	LARGE-GAIN	FOCAL	5	"DDX56,NPC1L1,NUDCD3,OGDH,TMED4"
TCGA.AA.A02K.01A	7	44612163	44621596	7	0.8038	LARGE-GAIN	FOCAL	2	"DDX56,TMED4"
TCGA.AG.3909.01A	7	44684894	44733373	9	1.4701	LARGE-GAIN	FOCAL	1	OGDH
TCGA.CK.5914.01A	7	44684894	44733986	10	1.435	LARGE-GAIN	FOCAL	1	OGDH
TCGA.AA.A00N.01A	7	44684894	44747164	19	1.2211	LARGE-GAIN	FOCAL	1	OGDH
TCGA.AG.3909.01A	7	44733986	44747164	10	1.0465	LARGE-GAIN	FOCAL	1	OGDH
TCGA.AG.A01W.01A	7	44762310	44769334	9	0.7545	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	7	44795772	44804478	10	0.9571	LARGE-GAIN	FOCAL	1	ZMIZ2
TCGA.AG.A01L.01A	7	44796504	44802815	7	1.1097	LARGE-GAIN	FOCAL	1	ZMIZ2
TCGA.AG.4009.01A	7	44836280	44874032	6	0.7362	LARGE-GAIN	FOCAL	2	"H2AFV,PPIA"
TCGA.AG.A01W.01A	7	44970133	45033779	19	0.8695	LARGE-GAIN	FOCAL	1	MYO1G
TCGA.CA.5797	7	44978349	45225101	74	1.1098	LARGE-GAIN	FOCAL	5	"CCM2,MYO1G,NACAD,RAMP3,TBRG4"
TCGA.AG.4009.01A	7	45067253	45113832	9	0.7854	LARGE-GAIN	FOCAL	1	CCM2
TCGA.AG.A01W.01A	7	45086570	45111575	15	1.3152	LARGE-GAIN	FOCAL	1	CCM2
TCGA.AA.3664	7	45136422	45217014	40	1.2162	LARGE-GAIN	FOCAL	2	"RAMP3,TBRG4"
TCGA.AG.A01L.01A	7	45139877	45145023	8	0.888	LARGE-GAIN	FOCAL	1	TBRG4
TCGA.AG.4009.01A	7	45222765	45753301	19	0.7829	LARGE-GAIN	FOCAL	2	"ADCY1,RAMP3"
TCGA.AA.A010.01A	7	45688231	45753301	14	0.8044	LARGE-GAIN	FOCAL	1	ADCY1
TCGA.G4.6294	7	47305322	47338256	20	0.7671	LARGE-GAIN	FOCAL	1	TNS3
TCGA.AG.4009.01A	7	47331491	47933425	67	0.8739	LARGE-GAIN	FOCAL	4	"C7orf65,C7orf69,PKD1L1,TNS3"
TCGA.AA.A010.01A	7	47336639	47698517	21	0.8029	LARGE-GAIN	FOCAL	2	"C7orf65,TNS3"
TCGA.G4.6294	7	47399838	47498363	39	0.7928	LARGE-GAIN	FOCAL	1	TNS3
TCGA.AG.3909.01A	7	47407920	47947637	64	0.874	LARGE-GAIN	FOCAL	4	"C7orf65,C7orf69,PKD1L1,TNS3"
TCGA.AA.A010.01A	7	47840218	47944712	44	0.9076	LARGE-GAIN	FOCAL	2	"C7orf69,PKD1L1"
TCGA.CK.5914.01A	7	48266832	48311352	12	0.735	LARGE-GAIN	FOCAL	1	ABCA13
TCGA.AA.A00N.01A	7	48266832	48451938	39	0.8625	LARGE-GAIN	FOCAL	1	ABCA13
TCGA.AG.3909.01A	7	48269400	50097554	67	0.875	LARGE-GAIN	FOCAL	3	"ABCA13,VWC2,ZPBP"
TCGA.AA.3509.01A	7	48288772	48318919	6	1.2324	LARGE-GAIN	FOCAL	1	ABCA13
TCGA.AZ.4684.01A	7	48288772	48319251	7	1.624	LARGE-GAIN	FOCAL	1	ABCA13
TCGA.CK.5914.01A	7	48377907	48450090	12	0.964	LARGE-GAIN	FOCAL	1	ABCA13
TCGA.CK.5914.01A	7	48528796	50097554	23	0.8364	LARGE-GAIN	FOCAL	3	"ABCA13,VWC2,ZPBP"
TCGA.AA.A00N.01A	7	48545862	50097554	22	0.9727	LARGE-GAIN	FOCAL	3	"ABCA13,VWC2,ZPBP"
TCGA.AZ.4684.01A	7	50022899	50169265	8	1.4733	LARGE-GAIN	FOCAL	2	"C7orf72,ZPBP"
TCGA.AA.A00F.01A	7	50121343	50547427	9	0.7409	LARGE-GAIN	FOCAL	5	"C7orf72,DDC,FIGNL1,IKZF1,ZPBP"
TCGA.AA.3941	7	50176408	50263559	43	0.7602	LARGE-GAIN	FOCAL	1	C7orf72
TCGA.AG.3909.01A	7	50544235	50660607	11	0.9274	LARGE-GAIN	FOCAL	2	"DDC,GRB10"
TCGA.AA.A010.01A	7	50562992	53103338	39	0.814	LARGE-GAIN	FOCAL	3	"COBL,DDC,GRB10"
TCGA.AA.A00N.01A	7	50566804	53103338	38	0.6959	LARGE-GAIN	FOCAL	3	"COBL,DDC,GRB10"
TCGA.DM.A1HB	7	50729510	50736157	10	0.9181	LARGE-GAIN	FOCAL	1	GRB10
TCGA.AG.3909.01A	7	50737379	51258500	16	0.9458	LARGE-GAIN	FOCAL	2	"COBL,GRB10"
TCGA.DM.A1D4	7	52728890	52742395	4	1.2225	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6923	7	54220889	54221253	2	1.0494	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3811	7	54261279	54888058	214	1.9684	LARGE-GAIN	FOCAL	2	"SEC61G,VSTM2A"
TCGA.AA.A010.01A	7	54823442	55248936	23	0.8361	LARGE-GAIN	FOCAL	2	"EGFR,SEC61G"
TCGA.AA.3811	7	54888750	55515870	247	2.1922	LARGE-GAIN	FOCAL	2	"EGFR,LANCL2"
TCGA.AG.3909.01A	7	55248936	55272949	9	0.8657	LARGE-GAIN	FOCAL	1	EGFR
TCGA.AG.3906.01A	7	55272949	55479573	6	0.9078	LARGE-GAIN	FOCAL	2	"EGFR,LANCL2"
TCGA.AA.3811	7	55515924	55632523	26	1.2528	LARGE-GAIN	FOCAL	1	VOPP1
TCGA.AG.3909.01A	7	55540501	55565248	3	1.2033	LARGE-GAIN	FOCAL	1	VOPP1
TCGA.AA.A010.01A	7	55540501	55912179	10	0.8292	LARGE-GAIN	FOCAL	2	"SEPT14,VOPP1"
TCGA.AA.3811	7	55641797	55776531	27	2.1651	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	7	56062534	56088739	8	1.1129	LARGE-GAIN	FOCAL	2	"GBAS,PSPH"
TCGA.AA.A00D.01A	7	56122013	56129403	10	1.0026	LARGE-GAIN	FOCAL	1	CCT6A
TCGA.AG.A00C.01A	7	56122013	56130652	12	0.7524	LARGE-GAIN	FOCAL	1	CCT6A
TCGA.AA.A00F.01A	7	56122013	56141793	16	0.8186	LARGE-GAIN	FOCAL	2	"CCT6A,SUMF2"
TCGA.AA.A010.01A	7	56144458	56183707	16	0.8845	LARGE-GAIN	FOCAL	4	"CHCHD2,NUPR1L,PHKG1,SUMF2"
TCGA.AG.3909.01A	7	56171868	63982176	28	0.8042	LARGE-GAIN	FOCAL	9	"CHCHD2,NUPR1L,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.CK.5914.01A	7	56174005	63727057	27	0.9721	LARGE-GAIN	FOCAL	7	"CHCHD2,NUPR1L,ZNF479,ZNF679,ZNF716,ZNF727,ZNF735"
TCGA.AA.3811	7	56200253	56479240	55	2.2281	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6782	7	57438576	57445245	3	1.7633	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1D9	7	62020155	62404705	9	1.0168	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	62393417	62453153	4	2.0293	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	7	63726243	64389310	26	0.6914	LARGE-GAIN	FOCAL	6	"ZNF107,ZNF138,ZNF273,ZNF679,ZNF680,ZNF736"
TCGA.AA.A00F.01A	7	64168910	64275896	4	0.9466	LARGE-GAIN	FOCAL	2	"ZNF107,ZNF138"
TCGA.DM.A28M.01A	7	64438731	64441685	4	1.9822	LARGE-GAIN	FOCAL	1	ZNF117
TCGA.DM.A28M.01A	7	64838813	64864152	6	0.8154	LARGE-GAIN	FOCAL	1	ZNF92
TCGA.AA.3495	7	64894174	66826001	167	0.9565	LARGE-GAIN	FOCAL	10	"ASL,CRCP,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1"
TCGA.AA.3941	7	65200777	65693179	40	1.0727	LARGE-GAIN	FOCAL	5	"ASL,CRCP,GUSB,TPST1,VKORC1L1"
TCGA.CA.6715	7	65264523	65326820	3	1.1433	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A02K.01A	7	65540979	65579763	12	0.7846	LARGE-GAIN	FOCAL	1	ASL
TCGA.AA.3941	7	65960256	66643267	63	0.9744	LARGE-GAIN	FOCAL	5	"KCTD7,RABGEF1,SBDS,TMEM248,TYW1"
TCGA.DM.A1D6	7	65982630	66286866	34	0.8121	LARGE-GAIN	FOCAL	2	"KCTD7,RABGEF1"
TCGA.CK.5914.01A	7	66147001	66413480	13	0.9695	LARGE-GAIN	FOCAL	2	"RABGEF1,TMEM248"
TCGA.AA.A00Q.01A	7	66479313	69583096	18	0.7043	LARGE-GAIN	FOCAL	2	"AUTS2,TYW1"
TCGA.CK.5914.01A	7	66482811	66660106	10	0.9532	LARGE-GAIN	FOCAL	1	TYW1
TCGA.AA.3982	7	67612077	67679960	27	0.7354	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	7	68286269	69528579	320	0.8888	LARGE-GAIN	FOCAL	1	AUTS2
TCGA.AA.3941	7	68756245	69080199	61	0.8158	LARGE-GAIN	FOCAL	1	AUTS2
TCGA.CA.6715	7	70120516	70124647	3	0.9627	LARGE-GAIN	FOCAL	1	AUTS2
TCGA.A6.3808.01A	7	70238971	72277629	36	0.9845	LARGE-GAIN	FOCAL	4	"AUTS2,CALN1,TYW1B,WBSCR17"
TCGA.CK.5914.01A	7	70597759	72281030	29	0.9538	LARGE-GAIN	FOCAL	3	"CALN1,TYW1B,WBSCR17"
TCGA.AA.A00N.01A	7	70800509	72209413	24	1.0804	LARGE-GAIN	FOCAL	3	"CALN1,TYW1B,WBSCR17"
TCGA.AG.3909.01A	7	70800509	72281030	27	1.2499	LARGE-GAIN	FOCAL	3	"CALN1,TYW1B,WBSCR17"
TCGA.AA.3666	7	71411788	71423711	7	0.8611	LARGE-GAIN	FOCAL	1	CALN1
TCGA.AA.A00Q.01A	7	72081655	72396893	14	0.8751	LARGE-GAIN	FOCAL	2	"POM121,TYW1B"
TCGA.AA.3862.01A	7	72409078	72722411	19	1.8573	LARGE-GAIN	FOCAL	2	"NSUN5,POM121"
TCGA.AA.3861.01A	7	72409078	72726866	20	1.6558	LARGE-GAIN	FOCAL	3	"NSUN5,POM121,TRIM50"
TCGA.AG.3906.01A	7	73085317	73123316	18	0.6844	LARGE-GAIN	FOCAL	4	"DNAJC30,STX1A,VPS37D,WBSCR22"
TCGA.AA.A00Q.01A	7	73601901	73609467	6	0.9978	LARGE-GAIN	FOCAL	1	EIF4H
TCGA.AA.A010.01A	7	73609467	73638920	10	0.8422	LARGE-GAIN	FOCAL	2	"EIF4H,LAT2"
TCGA.AG.4009.01A	7	73635896	74009277	48	0.7836	LARGE-GAIN	FOCAL	4	"CLIP2,GTF2IRD1,LAT2,RFC2"
TCGA.CK.5914.01A	7	73668560	73778514	8	1.0959	LARGE-GAIN	FOCAL	2	"CLIP2,RFC2"
TCGA.AA.A010.01A	7	73668560	73952962	29	1.0982	LARGE-GAIN	FOCAL	3	"CLIP2,GTF2IRD1,RFC2"
TCGA.AA.A00Q.01A	7	74119483	75045249	33	0.817	LARGE-GAIN	FOCAL	8	"GATSL2,GTF2I,GTF2IRD2,GTF2IRD2B,NCF1,TRIM73,TRIM74,WBSCR16"
TCGA.AA.3861.01A	7	74146793	75155180	47	1.5178	LARGE-GAIN	FOCAL	10	"GATSL2,GTF2I,GTF2IRD2,GTF2IRD2B,NCF1,POM121C,SPDYE5,TRIM73,TRIM74,WBSCR16"
TCGA.AA.3862.01A	7	74146793	75155180	48	1.761	LARGE-GAIN	FOCAL	10	"GATSL2,GTF2I,GTF2IRD2,GTF2IRD2B,NCF1,POM121C,SPDYE5,TRIM73,TRIM74,WBSCR16"
TCGA.AA.A010.01A	7	74563513	74582291	5	1.1527	LARGE-GAIN	FOCAL	2	"GTF2IRD2,GTF2IRD2B"
TCGA.CK.5914.01A	7	75368071	75442901	6	1.3737	LARGE-GAIN	FOCAL	3	"CCL24,CCL26,HIP1"
TCGA.AG.3909.01A	7	75401160	75442901	4	1.6791	LARGE-GAIN	FOCAL	2	"CCL24,CCL26"
TCGA.AG.A036.01A	7	75530709	75531555	2	1.8138	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	7	76054323	76071167	7	0.8371	LARGE-GAIN	FOCAL	1	ZP3
TCGA.AG.3909.01A	7	76054323	76071167	7	1.2928	LARGE-GAIN	FOCAL	1	ZP3
TCGA.CK.5914.01A	7	76054323	76071167	7	1.0175	LARGE-GAIN	FOCAL	1	ZP3
TCGA.AG.4009.01A	7	76054323	76142343	12	0.7245	LARGE-GAIN	FOCAL	3	"DTX2,UPK3B,ZP3"
TCGA.AA.3861.01A	7	76063326	76923933	32	1.1655	LARGE-GAIN	FOCAL	6	"CCDC146,DTX2,FGL2,POMZP3,UPK3B,ZP3"
TCGA.AA.3862.01A	7	76069511	76941151	38	1.1765	LARGE-GAIN	FOCAL	7	"CCDC146,DTX2,FGL2,GSAP,POMZP3,UPK3B,ZP3"
TCGA.DY.A1DC	7	76446321	76484083	8	1.5056	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	7	77522856	77523227	2	1.6208	LARGE-GAIN	FOCAL	1	PHTF2
TCGA.AA.A00N.01A	7	77756466	77797192	5	2.339	LARGE-GAIN	FOCAL	1	MAGI2
TCGA.DY.A1DC	7	79284543	79290889	8	1.408	LARGE-GAIN	FOCAL	0	None
TCGA.CK.4948.01B	7	81596407	81601040	6	0.8763	LARGE-GAIN	FOCAL	1	CACNA2D1
TCGA.DM.A28M.01A	7	81596407	81601040	5	1.9707	LARGE-GAIN	FOCAL	1	CACNA2D1
TCGA.DY.A1DC	7	84205802	84206504	3	1.9745	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	85175006	85210709	11	1.6809	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	7	85803264	86328609	109	0.9833	LARGE-GAIN	FOCAL	1	GRM3
TCGA.AA.A00N.01A	7	86998640	87072962	26	1.0337	LARGE-GAIN	FOCAL	2	"ABCB4,CROT"
TCGA.AY.4070	7	87059163	87062292	4	1.6155	LARGE-GAIN	FOCAL	1	ABCB4
TCGA.AA.A00N.01A	7	87133522	87196062	22	0.8187	LARGE-GAIN	FOCAL	1	ABCB1
TCGA.AA.A00N.01A	7	87329700	87465999	11	0.6818	LARGE-GAIN	FOCAL	3	"ABCB1,RUNDC3B,SLC25A40"
TCGA.AA.A00N.01A	7	87563727	87825696	31	0.8154	LARGE-GAIN	FOCAL	1	ADAM22
TCGA.AG.3909.01A	7	87607593	87825696	30	0.756	LARGE-GAIN	FOCAL	1	ADAM22
TCGA.F5.6464	7	88379482	88379784	3	1.9523	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	89622960	89629126	8	1.5845	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	7	91691538	91726851	18	1.641	LARGE-GAIN	FOCAL	1	AKAP9
TCGA.AA.3862.01A	7	91691538	91726851	18	1.6373	LARGE-GAIN	FOCAL	1	AKAP9
TCGA.AG.3909.01A	7	91924281	92027479	18	0.8164	LARGE-GAIN	FOCAL	1	ANKIB1
TCGA.AA.A00N.01A	7	91924281	92077034	19	0.8369	LARGE-GAIN	FOCAL	2	"ANKIB1,GATAD1"
TCGA.CK.5914.01A	7	91936626	91972301	4	0.8158	LARGE-GAIN	FOCAL	1	ANKIB1
TCGA.CK.5914.01A	7	92015776	92077034	9	0.8713	LARGE-GAIN	FOCAL	2	"ANKIB1,GATAD1"
TCGA.CK.5914.01A	7	92098727	92138584	20	0.8955	LARGE-GAIN	FOCAL	1	PEX1
TCGA.AG.A01N.01A	7	92219496	92861711	22	0.8586	LARGE-GAIN	FOCAL	6	"CCDC132,CDK6,FAM133B,HEPACAM2,SAMD9,SAMD9L"
TCGA.CK.5914.01A	7	92219496	92861711	23	0.7391	LARGE-GAIN	FOCAL	6	"CCDC132,CDK6,FAM133B,HEPACAM2,SAMD9,SAMD9L"
TCGA.AG.3909.01A	7	92244412	93116181	61	0.7248	LARGE-GAIN	FOCAL	6	"CALCR,CCDC132,CDK6,HEPACAM2,SAMD9,SAMD9L"
TCGA.A6.3808.01A	7	92403958	92978000	33	1.4803	LARGE-GAIN	FOCAL	5	"CCDC132,CDK6,HEPACAM2,SAMD9,SAMD9L"
TCGA.AZ.4684.01A	7	92403958	92987579	37	1.3068	LARGE-GAIN	FOCAL	5	"CCDC132,CDK6,HEPACAM2,SAMD9,SAMD9L"
TCGA.AA.A01C.01A	7	92760588	92848426	11	1.0733	LARGE-GAIN	FOCAL	2	"HEPACAM2,SAMD9L"
TCGA.AG.A01N.01A	7	93065212	93116181	11	0.9549	LARGE-GAIN	FOCAL	1	CALCR
TCGA.CK.5914.01A	7	93065212	93116181	11	1.0432	LARGE-GAIN	FOCAL	1	CALCR
TCGA.AA.A01C.01A	7	93072868	93519849	14	0.9718	LARGE-GAIN	FOCAL	2	"CALCR,TFPI2"
TCGA.CK.5914.01A	7	93623525	93633428	4	0.8857	LARGE-GAIN	FOCAL	1	BET1
TCGA.AG.A01W.01A	7	94000379	94022701	13	0.9291	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	7	94045668	94258984	46	0.8922	LARGE-GAIN	FOCAL	3	"CASD1,COL1A2,SGCE"
TCGA.AG.A01N.01A	7	94047751	94876760	53	0.752	LARGE-GAIN	FOCAL	5	"CASD1,COL1A2,PEG10,PPP1R9A,SGCE"
TCGA.AG.3909.01A	7	94048750	94059512	14	0.8246	LARGE-GAIN	FOCAL	1	COL1A2
TCGA.AA.A00N.01A	7	94049475	94139360	14	1.1377	LARGE-GAIN	FOCAL	2	"CASD1,COL1A2"
TCGA.AA.A024.01A	7	94054848	94056255	3	1.6298	LARGE-GAIN	FOCAL	1	COL1A2
TCGA.AA.A00N.01A	7	94214712	94248038	8	1.1321	LARGE-GAIN	FOCAL	1	SGCE
TCGA.DC.6682	7	94360806	94524116	25	0.8574	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	7	94740539	94919381	13	0.6982	LARGE-GAIN	FOCAL	1	PPP1R9A
TCGA.AA.A00N.01A	7	94740539	94935541	16	0.6822	LARGE-GAIN	FOCAL	2	"PON1,PPP1R9A"
TCGA.AG.3909.01A	7	94740539	94937274	17	0.7509	LARGE-GAIN	FOCAL	2	"PON1,PPP1R9A"
TCGA.AG.3909.01A	7	95434024	95625223	9	0.836	LARGE-GAIN	FOCAL	1	DYNC1I1
TCGA.AA.A00N.01A	7	95439667	96338936	36	0.7586	LARGE-GAIN	FOCAL	4	"C7orf76,DYNC1I1,SHFM1,SLC25A13"
TCGA.A6.3808.01A	7	95614160	95750472	11	1.7042	LARGE-GAIN	FOCAL	2	"DYNC1I1,SLC25A13"
TCGA.AG.3909.01A	7	95657460	95668547	4	1.2412	LARGE-GAIN	FOCAL	1	DYNC1I1
TCGA.AA.A010.01A	7	96746999	97362992	4	1.2113	LARGE-GAIN	FOCAL	2	"SDHAF3,TAC1"
TCGA.AY.4070	7	97180616	97500073	79	1.6797	LARGE-GAIN	FOCAL	2	"ASNS,TAC1"
TCGA.AA.A00F.01A	7	97363494	97616319	16	0.7644	LARGE-GAIN	FOCAL	3	"ASNS,OCM2,TAC1"
TCGA.AY.4070	7	97503139	98556961	203	1.3798	LARGE-GAIN	FOCAL	9	"BAIAP2L1,BHLHA15,BRI3,LMTK2,NPTX2,OCM2,TECPR1,TMEM130,TRRAP"
TCGA.AG.3906.01A	7	97614182	97619286	4	0.6857	LARGE-GAIN	FOCAL	1	OCM2
TCGA.AG.3909.01A	7	97614182	97780654	7	0.7241	LARGE-GAIN	FOCAL	2	"LMTK2,OCM2"
TCGA.CK.5914.01A	7	97614182	97780654	7	0.7607	LARGE-GAIN	FOCAL	2	"LMTK2,OCM2"
TCGA.AG.3909.01A	7	97861097	98460709	30	0.7175	LARGE-GAIN	FOCAL	5	"BAIAP2L1,BRI3,NPTX2,TECPR1,TMEM130"
TCGA.AA.A02K.01A	7	97862133	97875194	9	0.9127	LARGE-GAIN	FOCAL	1	TECPR1
TCGA.AA.A01C.01A	7	98248937	98254227	2	1.3817	LARGE-GAIN	FOCAL	1	NPTX2
TCGA.AA.A00F.01A	7	98478734	98500975	10	0.846	LARGE-GAIN	FOCAL	1	TRRAP
TCGA.AA.A010.01A	7	98500975	98659355	74	0.7012	LARGE-GAIN	FOCAL	2	"SMURF1,TRRAP"
TCGA.CK.5914.01A	7	98775496	98804978	9	1.4905	LARGE-GAIN	FOCAL	1	KPNA7
TCGA.AA.A00F.01A	7	98995453	99026675	12	0.7793	LARGE-GAIN	FOCAL	4	"ATP5J2-PTCD1,BUD31,PDAP1,PTCD1"
TCGA.AG.3906.01A	7	99013733	99045697	12	1.0305	LARGE-GAIN	FOCAL	4	"ATP5J2-PTCD1,BUD31,CPSF4,PTCD1"
TCGA.AA.A00N.01A	7	99096297	99117425	5	1.0126	LARGE-GAIN	FOCAL	2	"ZKSCAN5,ZNF394"
TCGA.AG.3909.01A	7	99096297	99123389	7	0.9337	LARGE-GAIN	FOCAL	2	"ZKSCAN5,ZNF394"
TCGA.CK.5914.01A	7	99258085	99273686	9	0.947	LARGE-GAIN	FOCAL	1	CYP3A5
TCGA.AG.A01J.01A	7	99272082	99306651	6	0.8299	LARGE-GAIN	FOCAL	3	"CYP3A5,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AA.A02F.01A	7	99277388	99375587	25	0.9382	LARGE-GAIN	FOCAL	4	"CYP3A4,CYP3A5,CYP3A7,CYP3A7-CYP3A51P"
TCGA.CK.5914.01A	7	99277388	99381568	27	1.3715	LARGE-GAIN	FOCAL	4	"CYP3A4,CYP3A5,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AG.3909.01A	7	99277388	99463480	40	0.8812	LARGE-GAIN	FOCAL	5	"CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AA.A02H.01A	7	99303094	99463480	39	0.8582	LARGE-GAIN	FOCAL	4	"CYP3A4,CYP3A43,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AG.A01J.01A	7	99308315	99317884	7	1.5879	LARGE-GAIN	FOCAL	2	"CYP3A7,CYP3A7-CYP3A51P"
TCGA.AA.A01C.01A	7	99311027	99319844	7	1.0641	LARGE-GAIN	FOCAL	2	"CYP3A7,CYP3A7-CYP3A51P"
TCGA.AG.A01J.01A	7	99319844	99461129	28	0.6887	LARGE-GAIN	FOCAL	4	"CYP3A4,CYP3A43,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AA.A00N.01A	7	99332600	99370166	11	1.0762	LARGE-GAIN	FOCAL	3	"CYP3A4,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AG.A00Y.01A	7	99700995	99710369	12	2.3054	LARGE-GAIN	FOCAL	2	"AP4M1,TAF6"
TCGA.AG.3909.01A	7	99786018	99808582	19	0.682	LARGE-GAIN	FOCAL	2	"GATS,STAG3"
TCGA.CK.5914.01A	7	99786018	99808582	19	0.9661	LARGE-GAIN	FOCAL	2	"GATS,STAG3"
TCGA.AA.3862.01A	7	99794741	99797132	7	2.2693	LARGE-GAIN	FOCAL	1	STAG3
TCGA.AA.A00K.01A	7	99795374	99797809	7	1.878	LARGE-GAIN	FOCAL	1	STAG3
TCGA.CK.5914.01A	7	99987511	100027660	22	0.9113	LARGE-GAIN	FOCAL	3	"MEPCE,PILRA,ZCWPW1"
TCGA.AG.A01W.01A	7	100112038	100113631	3	1.2374	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	7	100274130	100284947	13	1.2662	LARGE-GAIN	FOCAL	2	"GIGYF1,GNB2"
TCGA.AG.3891.01A	7	100274130	100345720	25	0.6831	LARGE-GAIN	FOCAL	5	"EPO,GIGYF1,GNB2,POP7,ZAN"
TCGA.AG.3909.01A	7	100355807	100371292	13	1.3136	LARGE-GAIN	FOCAL	1	ZAN
TCGA.AG.4009.01A	7	100355807	100404035	29	0.8106	LARGE-GAIN	FOCAL	2	"EPHB4,ZAN"
TCGA.AG.3906.01A	7	100366203	100421762	31	0.7135	LARGE-GAIN	FOCAL	2	"EPHB4,ZAN"
TCGA.AG.3909.01A	7	100372920	100421296	28	0.7582	LARGE-GAIN	FOCAL	2	"EPHB4,ZAN"
TCGA.AA.A02K.01A	7	100410318	100410670	2	2.3236	LARGE-GAIN	FOCAL	1	EPHB4
TCGA.AA.A00J.01A	7	100410392	100411514	3	4.3338	LARGE-GAIN	FOCAL	1	EPHB4
TCGA.AG.A01W.01A	7	100461080	100468066	10	0.8617	LARGE-GAIN	FOCAL	2	"SLC12A9,TRIP6"
TCGA.AG.3906.01A	7	100481650	100490739	14	1.0343	LARGE-GAIN	FOCAL	3	"ACHE,SRRT,UFSP1"
TCGA.AA.A017.01A	7	100486445	100681345	13	1.2674	LARGE-GAIN	FOCAL	5	"ACHE,MUC12,MUC17,MUC3A,UFSP1"
TCGA.AA.A02E.01A	7	100663356	100681345	9	0.815	LARGE-GAIN	FOCAL	1	MUC17
TCGA.CK.5914.01A	7	100663356	100771708	23	1.1898	LARGE-GAIN	FOCAL	3	"MUC17,SERPINE1,TRIM56"
TCGA.AG.3909.01A	7	100663356	100780637	29	1.0033	LARGE-GAIN	FOCAL	3	"MUC17,SERPINE1,TRIM56"
TCGA.AG.3906.01A	7	100865834	100884059	7	0.7038	LARGE-GAIN	FOCAL	3	"CLDN15,FIS1,ZNHIT1"
TCGA.AY.A69D	7	100865846	100882115	3	1.2674	LARGE-GAIN	FOCAL	2	"CLDN15,ZNHIT1"
TCGA.AA.A00N.01A	7	101063210	101200600	12	1.167	LARGE-GAIN	FOCAL	1	COL26A1
TCGA.AG.3909.01A	7	101870605	102065411	22	0.7777	LARGE-GAIN	FOCAL	5	"CUX1,LOC100289561,PRKRIP1,SH2B2,SPDYE6"
TCGA.AA.A00N.01A	7	102417648	102608419	20	0.751	LARGE-GAIN	FOCAL	3	"FAM185A,FBXL13,LRRC17"
TCGA.AG.3909.01A	7	102453739	102608419	17	0.8668	LARGE-GAIN	FOCAL	2	"FBXL13,LRRC17"
TCGA.AA.A00N.01A	7	103004581	103824337	89	0.7234	LARGE-GAIN	FOCAL	4	"ORC5,PSMC2,RELN,SLC26A5"
TCGA.AG.3909.01A	7	103029418	103828667	81	0.8288	LARGE-GAIN	FOCAL	3	"ORC5,RELN,SLC26A5"
TCGA.AA.A02H.01A	7	103033314	103276632	52	0.7113	LARGE-GAIN	FOCAL	2	"RELN,SLC26A5"
TCGA.CK.5914.01A	7	103048269	103155595	20	0.7589	LARGE-GAIN	FOCAL	2	"RELN,SLC26A5"
TCGA.AA.A01C.01A	7	103212568	103557474	30	0.821	LARGE-GAIN	FOCAL	1	RELN
TCGA.CK.5914.01A	7	103234721	103322516	16	1.0773	LARGE-GAIN	FOCAL	1	RELN
TCGA.AA.A02H.01A	7	103280936	103338262	8	1.6116	LARGE-GAIN	FOCAL	1	RELN
TCGA.AY.4070	7	103381422	103728399	163	1.2154	LARGE-GAIN	FOCAL	1	RELN
TCGA.AY.4070	7	103730377	105153190	409	0.8484	LARGE-GAIN	FOCAL	5	"KMT2E,LHFPL3,ORC5,PUS7,SRPK2"
TCGA.CK.5914.01A	7	104377125	104844038	37	0.9402	LARGE-GAIN	FOCAL	3	"KMT2E,LHFPL3,SRPK2"
TCGA.AG.3909.01A	7	104377125	105142820	50	0.8137	LARGE-GAIN	FOCAL	4	"KMT2E,LHFPL3,PUS7,SRPK2"
TCGA.AA.3941	7	104437865	105797525	405	0.7454	LARGE-GAIN	FOCAL	8	"ATXN7L1,CDHR3,KMT2E,LHFPL3,PUS7,RINT1,SRPK2,SYPL1"
TCGA.AG.3909.01A	7	105182848	105204133	7	0.7064	LARGE-GAIN	FOCAL	1	RINT1
TCGA.AG.A01W.01A	7	105303433	105390925	4	0.8008	LARGE-GAIN	FOCAL	1	ATXN7L1
TCGA.AG.4009.01A	7	105615243	105672811	18	0.6849	LARGE-GAIN	FOCAL	1	CDHR3
TCGA.CK.5914.01A	7	105658263	105894761	17	0.7237	LARGE-GAIN	FOCAL	3	"CDHR3,NAMPT,SYPL1"
TCGA.AG.3909.01A	7	105664820	105672811	5	1.0835	LARGE-GAIN	FOCAL	1	CDHR3
TCGA.DM.A28M.01A	7	105752545	105903797	7	1.4502	LARGE-GAIN	FOCAL	2	"NAMPT,SYPL1"
TCGA.AZ.4684.01A	7	105891482	105903797	5	2.3211	LARGE-GAIN	FOCAL	1	NAMPT
TCGA.AA.3509.01A	7	105891482	105912929	10	1.4928	LARGE-GAIN	FOCAL	1	NAMPT
TCGA.AA.3524	7	106100598	106105573	3	1.5247	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	7	107207320	107333902	17	0.9019	LARGE-GAIN	FOCAL	3	"BCAP29,DUS4L,SLC26A4"
TCGA.AA.A00F.01A	7	107207466	107234348	9	0.882	LARGE-GAIN	FOCAL	2	"BCAP29,DUS4L"
TCGA.AA.3941	7	107372334	107778010	159	0.7539	LARGE-GAIN	FOCAL	5	"CBLL1,DLD,LAMB1,LAMB4,SLC26A3"
TCGA.AA.A00N.01A	7	107412425	107434797	14	0.7213	LARGE-GAIN	FOCAL	1	SLC26A3
TCGA.CK.5914.01A	7	107555920	107604946	24	1.2713	LARGE-GAIN	FOCAL	2	"DLD,LAMB1"
TCGA.AA.A00N.01A	7	107572568	107604946	14	1.3466	LARGE-GAIN	FOCAL	1	LAMB1
TCGA.AG.3909.01A	7	107572568	107616107	17	1.1869	LARGE-GAIN	FOCAL	1	LAMB1
TCGA.CK.5914.01A	7	107642531	107744892	28	0.8737	LARGE-GAIN	FOCAL	2	"LAMB1,LAMB4"
TCGA.AG.3909.01A	7	107664432	107744892	26	1.0065	LARGE-GAIN	FOCAL	1	LAMB4
TCGA.AA.A00N.01A	7	107671201	107849818	52	0.8286	LARGE-GAIN	FOCAL	2	"LAMB4,NRCAM"
TCGA.DY.A1DC	7	107770623	107809605	16	0.9327	LARGE-GAIN	FOCAL	2	"LAMB4,NRCAM"
TCGA.CK.5914.01A	7	107790337	107808684	6	0.9286	LARGE-GAIN	FOCAL	1	NRCAM
TCGA.AA.3941	7	107811579	107867267	29	0.7034	LARGE-GAIN	FOCAL	1	NRCAM
TCGA.CK.5914.01A	7	107864122	107874979	6	0.7426	LARGE-GAIN	FOCAL	1	NRCAM
TCGA.AA.A00N.01A	7	108524057	111127257	7	0.6809	LARGE-GAIN	FOCAL	3	"C7orf66,IMMP2L,LRRN3"
TCGA.AG.3909.01A	7	108524057	111161322	8	0.7447	LARGE-GAIN	FOCAL	3	"C7orf66,IMMP2L,LRRN3"
TCGA.AA.3679	7	110441854	110552796	30	0.7027	LARGE-GAIN	FOCAL	1	IMMP2L
TCGA.DY.A1DC	7	110733716	110743093	5	1.633	LARGE-GAIN	FOCAL	2	"IMMP2L,LRRN3"
TCGA.AA.A00N.01A	7	111395514	112090691	53	0.836	LARGE-GAIN	FOCAL	3	"DOCK4,IFRD1,ZNF277"
TCGA.AG.3909.01A	7	111398628	112090691	51	0.8827	LARGE-GAIN	FOCAL	3	"DOCK4,IFRD1,ZNF277"
TCGA.F5.6810	7	112434412	112476755	9	0.9996	LARGE-GAIN	FOCAL	1	C7orf60
TCGA.AA.3509.01A	7	113517756	114268573	11	1.1426	LARGE-GAIN	FOCAL	2	"FOXP2,PPP1R3A"
TCGA.AA.A00N.01A	7	113517756	116139799	42	0.7147	LARGE-GAIN	FOCAL	6	"CAV2,FOXP2,MDFIC,PPP1R3A,TES,TFEC"
TCGA.AG.3909.01A	7	113517756	116139799	40	0.7762	LARGE-GAIN	FOCAL	6	"CAV2,FOXP2,MDFIC,PPP1R3A,TES,TFEC"
TCGA.CK.5914.01A	7	113518947	116139799	43	0.8711	LARGE-GAIN	FOCAL	6	"CAV2,FOXP2,MDFIC,PPP1R3A,TES,TFEC"
TCGA.AZ.4684.01A	7	113522063	114268573	8	1.8772	LARGE-GAIN	FOCAL	2	"FOXP2,PPP1R3A"
TCGA.CK.5914.01A	7	116199022	116502633	21	0.941	LARGE-GAIN	FOCAL	3	"CAPZA2,CAV1,MET"
TCGA.AG.3909.01A	7	116199022	116937619	47	0.8413	LARGE-GAIN	FOCAL	5	"CAPZA2,CAV1,MET,ST7,WNT2"
TCGA.CK.5914.01A	7	116769778	117025704	29	0.9485	LARGE-GAIN	FOCAL	3	"ASZ1,ST7,WNT2"
TCGA.AG.3909.01A	7	117003608	117025704	9	0.6797	LARGE-GAIN	FOCAL	1	ASZ1
TCGA.AA.A02K.01A	7	117025705	117120078	6	0.6854	LARGE-GAIN	FOCAL	2	"ASZ1,CFTR"
TCGA.AA.A00N.01A	7	117067372	117204634	12	0.8251	LARGE-GAIN	FOCAL	2	"ASZ1,CFTR"
TCGA.AA.A00N.01A	7	117267535	117450767	29	0.9783	LARGE-GAIN	FOCAL	2	"CFTR,CTTNBP2"
TCGA.AG.3909.01A	7	117267535	117450767	27	0.7959	LARGE-GAIN	FOCAL	2	"CFTR,CTTNBP2"
TCGA.DY.A1DC	7	118421594	118490855	15	1.3341	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2689	7	119388461	119458673	19	0.6907	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	7	119914637	120478782	11	0.8034	LARGE-GAIN	FOCAL	2	"KCND2,TSPAN12"
TCGA.CK.5914.01A	7	119914637	120591162	15	0.6871	LARGE-GAIN	FOCAL	3	"ING3,KCND2,TSPAN12"
TCGA.AA.A010.01A	7	120496683	120629656	15	1.0201	LARGE-GAIN	FOCAL	3	"CPED1,ING3,TSPAN12"
TCGA.AG.3909.01A	7	120737706	120935453	19	0.9099	LARGE-GAIN	FOCAL	1	CPED1
TCGA.CK.5914.01A	7	120737706	120935453	19	0.8468	LARGE-GAIN	FOCAL	1	CPED1
TCGA.CK.5914.01A	7	120990458	121011315	6	0.7578	LARGE-GAIN	FOCAL	1	FAM3C
TCGA.AA.A00N.01A	7	121568156	121721502	34	0.9043	LARGE-GAIN	FOCAL	2	"AASS,PTPRZ1"
TCGA.AG.3909.01A	7	121568156	121741616	42	0.8214	LARGE-GAIN	FOCAL	2	"AASS,PTPRZ1"
TCGA.AA.A010.01A	7	123254529	123344611	18	0.6856	LARGE-GAIN	FOCAL	3	"ASB15,LMOD2,WASL"
TCGA.AA.A00N.01A	7	124463965	126698104	25	0.9589	LARGE-GAIN	FOCAL	2	"GRM8,POT1"
TCGA.DY.A1DC	7	126101125	126108204	3	1.8834	LARGE-GAIN	FOCAL	1	GRM8
TCGA.AG.3909.01A	7	127235323	128141778	84	0.7173	LARGE-GAIN	FOCAL	10	"FSCN3,HILPDA,IMPDH1,LEP,LRRC4,METTL2B,PAX4,PRRT4,RBM28,SND1"
TCGA.CK.5914.01A	7	127240208	127637699	27	0.8773	LARGE-GAIN	FOCAL	3	"FSCN3,PAX4,SND1"
TCGA.AA.A00N.01A	7	127251097	127630953	25	0.9674	LARGE-GAIN	FOCAL	2	"PAX4,SND1"
TCGA.AA.A02H.01A	7	127253758	127724726	24	0.8059	LARGE-GAIN	FOCAL	3	"LRRC4,PAX4,SND1"
TCGA.AG.A020	7	127586085	128323033	158	0.7525	LARGE-GAIN	FOCAL	9	"FAM71F2,HILPDA,IMPDH1,LEP,LRRC4,METTL2B,PRRT4,RBM28,SND1"
TCGA.AA.A00N.01A	7	127953176	127965851	8	0.8028	LARGE-GAIN	FOCAL	1	RBM28
TCGA.CK.5914.01A	7	127953176	127970825	9	0.7861	LARGE-GAIN	FOCAL	1	RBM28
TCGA.AG.3906.01A	7	128040820	128049303	3	1.6275	LARGE-GAIN	FOCAL	1	IMPDH1
TCGA.AG.A01W.01A	7	128276424	128282453	9	0.9826	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	7	128369343	128375844	7	0.985	LARGE-GAIN	FOCAL	1	FAM71F1
TCGA.AA.3939.01A	7	128415021	128415535	2	2.1271	LARGE-GAIN	FOCAL	1	OPN1SW
TCGA.AA.3861.01A	7	128434360	128449452	9	2.3882	LARGE-GAIN	FOCAL	1	CCDC136
TCGA.AA.3862.01A	7	128434360	128449452	9	2.3448	LARGE-GAIN	FOCAL	1	CCDC136
TCGA.AG.A015.01A	7	128445366	128588620	46	0.7074	LARGE-GAIN	FOCAL	6	"ATP6V1F,CCDC136,FLNC,IRF5,KCP,LOC100130705"
TCGA.AG.A01L.01A	7	128491245	128495216	5	1.1557	LARGE-GAIN	FOCAL	1	FLNC
TCGA.CK.5914.01A	7	128607287	128802632	25	0.6868	LARGE-GAIN	FOCAL	2	"TNPO3,TSPAN33"
TCGA.AG.3909.01A	7	128610160	128694658	20	0.7723	LARGE-GAIN	FOCAL	1	TNPO3
TCGA.AG.3909.01A	7	129008264	129049252	11	0.7406	LARGE-GAIN	FOCAL	1	AHCYL2
TCGA.AA.3982	7	129072023	129536642	91	0.9023	LARGE-GAIN	FOCAL	4	"NRF1,SMKR1,STRIP2,UBE2H"
TCGA.AG.3906.01A	7	129098508	129125383	11	1.1334	LARGE-GAIN	FOCAL	1	STRIP2
TCGA.AA.A00F.01A	7	129102748	129297168	9	0.8264	LARGE-GAIN	FOCAL	3	"NRF1,SMKR1,STRIP2"
TCGA.AG.3909.01A	7	129330199	129736708	27	0.7851	LARGE-GAIN	FOCAL	4	"KLHDC10,NRF1,UBE2H,ZC3HC1"
TCGA.AA.A010.01A	7	129592272	129691013	11	0.91	LARGE-GAIN	FOCAL	2	"UBE2H,ZC3HC1"
TCGA.AG.3909.01A	7	129815320	130051954	63	0.7546	LARGE-GAIN	FOCAL	7	"CEP41,CPA1,CPA2,CPA4,CPA5,SSMEM1,TMEM209"
TCGA.AA.A010.01A	7	129832424	130132078	63	0.7077	LARGE-GAIN	FOCAL	8	"CEP41,CPA1,CPA2,CPA4,CPA5,MEST,SSMEM1,TMEM209"
TCGA.CK.5914.01A	7	129944281	130132078	40	0.6912	LARGE-GAIN	FOCAL	5	"CEP41,CPA1,CPA4,CPA5,MEST"
TCGA.AA.A00N.01A	7	129945619	130038695	28	1.1087	LARGE-GAIN	FOCAL	4	"CEP41,CPA1,CPA4,CPA5"
TCGA.AG.3909.01A	7	130363945	131172349	25	0.7029	LARGE-GAIN	FOCAL	3	"KLF14,MKLN1,TSGA13"
TCGA.AA.A00N.01A	7	130369958	133981082	112	0.7674	LARGE-GAIN	FOCAL	9	"CHCHD3,EXOC4,KLF14,LRGUK,MKLN1,PLXNA4,PODXL,SLC35B4,TSGA13"
TCGA.CK.5914.01A	7	131012607	131122527	10	0.8332	LARGE-GAIN	FOCAL	1	MKLN1
TCGA.CK.5914.01A	7	131172349	133812120	70	0.9125	LARGE-GAIN	FOCAL	6	"CHCHD3,EXOC4,LRGUK,MKLN1,PLXNA4,PODXL"
TCGA.AG.3909.01A	7	131189050	131833263	14	1.1814	LARGE-GAIN	FOCAL	2	"PLXNA4,PODXL"
TCGA.AA.3844	7	131375331	131380007	3	1.3509	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	7	131815189	131912158	26	0.8069	LARGE-GAIN	FOCAL	1	PLXNA4
TCGA.AG.3909.01A	7	131887357	132193263	14	1.4434	LARGE-GAIN	FOCAL	1	PLXNA4
TCGA.AG.3909.01A	7	132470308	133979563	47	0.7626	LARGE-GAIN	FOCAL	4	"CHCHD3,EXOC4,LRGUK,SLC35B4"
TCGA.DY.A1DC	7	133453309	133460295	4	1.4567	LARGE-GAIN	FOCAL	1	EXOC4
TCGA.AA.3667	7	133969438	134040633	37	0.757	LARGE-GAIN	FOCAL	1	SLC35B4
TCGA.AA.A02H.01A	7	134132685	134134423	4	1.8073	LARGE-GAIN	FOCAL	1	AKR1B1
TCGA.AA.A02H.01A	7	134135491	134346248	23	0.737	LARGE-GAIN	FOCAL	4	"AKR1B1,AKR1B10,AKR1B15,BPGM"
TCGA.CK.5914.01A	7	134135491	134613478	28	1.2278	LARGE-GAIN	FOCAL	5	"AKR1B1,AKR1B10,AKR1B15,BPGM,CALD1"
TCGA.AG.3909.01A	7	134143681	134260546	17	1.2213	LARGE-GAIN	FOCAL	3	"AKR1B1,AKR1B10,AKR1B15"
TCGA.AA.A00N.01A	7	134212595	134819576	51	0.7997	LARGE-GAIN	FOCAL	6	"AGBL3,AKR1B10,AKR1B15,BPGM,C7orf49,CALD1"
TCGA.AG.3909.01A	7	134261043	134718883	20	0.7857	LARGE-GAIN	FOCAL	4	"AGBL3,AKR1B15,BPGM,CALD1"
TCGA.AZ.4684.01A	7	134718883	134819576	11	1.2359	LARGE-GAIN	FOCAL	2	"AGBL3,C7orf49"
TCGA.AA.3941	7	134842618	135063390	119	0.7119	LARGE-GAIN	FOCAL	5	"C7orf49,CNOT4,STRA8,TMEM140,WDR91"
TCGA.AA.A01K.01A	7	134893506	134894287	2	6.1208	LARGE-GAIN	FOCAL	1	WDR91
TCGA.AA.A02H.01A	7	134936483	135289046	32	0.7504	LARGE-GAIN	FOCAL	3	"CNOT4,NUP205,STRA8"
TCGA.CK.5914.01A	7	134943136	135291947	34	0.7288	LARGE-GAIN	FOCAL	3	"CNOT4,NUP205,STRA8"
TCGA.AA.A00N.01A	7	135047586	135312672	43	0.8253	LARGE-GAIN	FOCAL	2	"CNOT4,NUP205"
TCGA.AZ.4684.01A	7	135073494	135122899	9	1.5282	LARGE-GAIN	FOCAL	1	CNOT4
TCGA.DM.A28M.01A	7	135082863	135099073	4	1.5797	LARGE-GAIN	FOCAL	1	CNOT4
TCGA.AA.3941	7	135105532	135521520	102	0.6939	LARGE-GAIN	FOCAL	5	"C7orf73,CNOT4,FAM180A,NUP205,SLC13A4"
TCGA.AA.A00F.01A	7	135320266	135333105	8	0.6815	LARGE-GAIN	FOCAL	1	NUP205
TCGA.AA.A02H.01A	7	135327892	135376268	10	0.6907	LARGE-GAIN	FOCAL	3	"C7orf73,NUP205,SLC13A4"
TCGA.AF.6672	7	135357475	135543508	70	1.088	LARGE-GAIN	FOCAL	3	"C7orf73,FAM180A,SLC13A4"
TCGA.AA.A00N.01A	7	135366259	137776467	79	0.7938	LARGE-GAIN	FOCAL	10	"AKR1D1,CHRM2,CREB3L2,DGKI,FAM180A,LOC100130880,LUZP6,MTPN,PTN,SLC13A4"
TCGA.AY.4070	7	135545414	137284523	581	0.7144	LARGE-GAIN	FOCAL	5	"CHRM2,DGKI,LUZP6,MTPN,PTN"
TCGA.AZ.4684.01A	7	135611995	137269906	31	0.9276	LARGE-GAIN	FOCAL	5	"CHRM2,DGKI,LUZP6,MTPN,PTN"
TCGA.A6.2682	7	136062960	136116322	15	1.0702	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	7	136238381	136563239	4	0.9701	LARGE-GAIN	FOCAL	1	CHRM2
TCGA.AA.A02H.01A	7	136587868	136912698	5	1.6147	LARGE-GAIN	FOCAL	2	"CHRM2,PTN"
TCGA.DY.A1DC	7	136793114	136800832	10	1.4325	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	7	137600546	138310653	35	0.688	LARGE-GAIN	FOCAL	5	"AKR1D1,CREB3L2,LOC100130880,SVOPL,TRIM24"
TCGA.AG.3611.01A	7	138305734	138455846	29	0.6916	LARGE-GAIN	FOCAL	2	"ATP6V0A4,SVOPL"
TCGA.AA.A010.01A	7	138344562	138602284	49	0.9238	LARGE-GAIN	FOCAL	4	"ATP6V0A4,KIAA1549,SVOPL,TMEM213"
TCGA.AA.A00N.01A	7	138391319	138602284	44	0.8606	LARGE-GAIN	FOCAL	3	"ATP6V0A4,KIAA1549,TMEM213"
TCGA.DM.A1HB	7	138457685	138488207	6	1.3489	LARGE-GAIN	FOCAL	2	"ATP6V0A4,TMEM213"
TCGA.AF.3914.01A	7	138545834	138555883	4	1.5212	LARGE-GAIN	FOCAL	1	KIAA1549
TCGA.AA.A00N.01A	7	139281436	139717444	23	0.7393	LARGE-GAIN	FOCAL	2	"HIPK2,TBXAS1"
TCGA.CK.5914.01A	7	139288777	139661680	18	0.8971	LARGE-GAIN	FOCAL	2	"HIPK2,TBXAS1"
TCGA.AG.3906.01A	7	140048389	140125630	13	0.9903	LARGE-GAIN	FOCAL	2	"RAB19,SLC37A3"
TCGA.AA.A010.01A	7	140178912	140285340	17	0.9778	LARGE-GAIN	FOCAL	2	"DENND2A,MKRN1"
TCGA.AG.3909.01A	7	140218431	140301153	16	1.1833	LARGE-GAIN	FOCAL	1	DENND2A
TCGA.AA.A00N.01A	7	140219379	140301153	17	0.7972	LARGE-GAIN	FOCAL	1	DENND2A
TCGA.AA.3939.01A	7	140221603	140269400	12	0.8621	LARGE-GAIN	FOCAL	1	DENND2A
TCGA.CK.5914.01A	7	140266844	140301153	7	1.0999	LARGE-GAIN	FOCAL	1	DENND2A
TCGA.AA.3509.01A	7	140434376	140482774	9	0.9983	LARGE-GAIN	FOCAL	1	BRAF
TCGA.AA.A02H.01A	7	141292869	141315238	6	1.0067	LARGE-GAIN	FOCAL	1	AGK
TCGA.AG.A01W.01A	7	141409725	141447018	9	0.697	LARGE-GAIN	FOCAL	2	"SSBP1,WEE2"
TCGA.AA.A02H.01A	7	141540746	141734043	22	0.8764	LARGE-GAIN	FOCAL	5	"CLEC5A,MGAM,OR9A4,PRSS37,TAS2R38"
TCGA.CK.5914.01A	7	141643644	141800548	46	0.9548	LARGE-GAIN	FOCAL	3	"CLEC5A,MGAM,TAS2R38"
TCGA.AA.A02H.01A	7	141734422	141740492	6	1.5525	LARGE-GAIN	FOCAL	1	MGAM
TCGA.AG.A01L.01A	7	141736585	141740492	4	0.811	LARGE-GAIN	FOCAL	1	MGAM
TCGA.AA.A02H.01A	7	141757961	141796072	11	0.9099	LARGE-GAIN	FOCAL	1	MGAM
TCGA.AA.3855	7	142273429	142375797	19	1.0049	LARGE-GAIN	FOCAL	1	MTRNR2L6
TCGA.AA.3680	7	142273429	142488687	42	0.8133	LARGE-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3666	7	142273429	142493128	43	0.7382	LARGE-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3854	7	142273429	142501803	45	1.0062	LARGE-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3693	7	142338468	142493128	38	0.8804	LARGE-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3818	7	142338468	142493128	38	1.0974	LARGE-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3667	7	142338468	142501803	40	0.8672	LARGE-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3695	7	142339391	142493128	37	0.6784	LARGE-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.DY.A1DC	7	142400844	142402649	4	1.9766	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3885	7	142414802	142493128	13	1.2436	LARGE-GAIN	FOCAL	1	PRSS1
TCGA.AA.A010.01A	7	142457254	142460682	5	0.7054	LARGE-GAIN	FOCAL	1	PRSS1
TCGA.AA.A02H.01A	7	142457254	142460682	5	1.131	LARGE-GAIN	FOCAL	1	PRSS1
TCGA.AG.3909.01A	7	142457254	142460682	5	2.1541	LARGE-GAIN	FOCAL	1	PRSS1
TCGA.AG.A01L.01A	7	142457254	142460682	5	0.9151	LARGE-GAIN	FOCAL	1	PRSS1
TCGA.CK.5914.01A	7	142457254	142460682	5	1.7028	LARGE-GAIN	FOCAL	1	PRSS1
TCGA.AG.3611.01A	7	142457254	142560945	6	0.926	LARGE-GAIN	FOCAL	2	"EPHB6,PRSS1"
TCGA.CK.5914.01A	7	142574129	142829176	41	0.9112	LARGE-GAIN	FOCAL	7	"C7orf34,KEL,OR6V1,OR9A2,PIP,TRPV5,TRPV6"
TCGA.AA.A00N.01A	7	142583117	142962078	48	1.1184	LARGE-GAIN	FOCAL	10	"C7orf34,GSTK1,KEL,OR6V1,OR9A2,PIP,TAS2R39,TAS2R40,TRPV5,TRPV6"
TCGA.AG.3909.01A	7	142605633	142829176	36	1.3679	LARGE-GAIN	FOCAL	6	"C7orf34,KEL,OR6V1,OR9A2,PIP,TRPV5"
TCGA.AG.A014.01A	7	142625737	142627103	3	2.8261	LARGE-GAIN	FOCAL	1	TRPV5
TCGA.AA.A00J.01A	7	142649544	142659195	9	1.2683	LARGE-GAIN	FOCAL	1	KEL
TCGA.AG.3909.01A	7	142832239	142960555	7	0.8341	LARGE-GAIN	FOCAL	4	"GSTK1,PIP,TAS2R39,TAS2R40"
TCGA.AF.3914.01A	7	142989404	143001730	7	0.72	LARGE-GAIN	FOCAL	1	CASP2
TCGA.AG.3909.01A	7	143000830	143028271	11	1.1543	LARGE-GAIN	FOCAL	2	"CASP2,CLCN1"
TCGA.AA.A00N.01A	7	143001730	143027824	9	0.7286	LARGE-GAIN	FOCAL	2	"CASP2,CLCN1"
TCGA.AG.3906.01A	7	143038970	143054326	10	1.0766	LARGE-GAIN	FOCAL	2	"CLCN1,FAM131B"
TCGA.DM.A1DB	7	143127770	143131955	3	2.1473	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	7	143270084	143573060	7	2.3081	LARGE-GAIN	FOCAL	4	"CTAGE15,CTAGE6,TCAF1,TCAF2"
TCGA.AA.3862.01A	7	143400040	143555877	6	2.7462	LARGE-GAIN	FOCAL	3	"CTAGE6,TCAF1,TCAF2"
TCGA.AA.3862.01A	7	143881150	144096030	13	2.7851	LARGE-GAIN	FOCAL	8	"ARHGEF35,ARHGEF5,CTAGE4,CTAGE8,NOBOX,OR2A1,OR2A42,OR2A7"
TCGA.AA.3861.01A	7	143955781	144096800	12	2.2176	LARGE-GAIN	FOCAL	7	"ARHGEF5,CTAGE4,CTAGE8,NOBOX,OR2A1,OR2A42,OR2A7"
TCGA.AG.3906.01A	7	144074151	144101622	9	0.7702	LARGE-GAIN	FOCAL	2	"ARHGEF5,NOBOX"
TCGA.AF.6672	7	144844088	144941957	24	0.7	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A02H.01A	7	146805222	147869347	15	0.844	LARGE-GAIN	FOCAL	1	CNTNAP2
TCGA.AG.3727	7	147007129	147021496	11	0.8791	LARGE-GAIN	FOCAL	1	CNTNAP2
TCGA.AA.A010.01A	7	147964073	148511958	33	0.798	LARGE-GAIN	FOCAL	4	"C7orf33,CNTNAP2,CUL1,EZH2"
TCGA.AA.A00Q.01A	7	148080724	148457398	12	0.7029	LARGE-GAIN	FOCAL	3	"C7orf33,CNTNAP2,CUL1"
TCGA.AA.3941	7	148269248	148964512	167	0.8742	LARGE-GAIN	FOCAL	10	"C7orf33,CUL1,EZH2,PDIA4,ZNF212,ZNF282,ZNF398,ZNF425,ZNF783,ZNF786"
TCGA.AG.A016.01A	7	148454045	148544227	35	0.8545	LARGE-GAIN	FOCAL	2	"CUL1,EZH2"
TCGA.AA.3982	7	148632719	148875631	46	0.7607	LARGE-GAIN	FOCAL	4	"PDIA4,ZNF398,ZNF425,ZNF786"
TCGA.AG.3906.01A	7	148895406	148950633	8	1.0119	LARGE-GAIN	FOCAL	2	"ZNF212,ZNF282"
TCGA.AG.3906.01A	7	149128840	149255824	11	1.4997	LARGE-GAIN	FOCAL	2	"ZNF746,ZNF777"
TCGA.AA.3941	7	149414479	149642018	49	0.9014	LARGE-GAIN	FOCAL	5	"ATP6V0E2,KRBA1,SSPO,ZNF467,ZNF862"
TCGA.AA.A02K.01A	7	149525970	149556473	9	0.7604	LARGE-GAIN	FOCAL	2	"SSPO,ZNF862"
TCGA.AA.3941	7	149678459	150235076	97	0.7251	LARGE-GAIN	FOCAL	8	"ACTR3C,GIMAP7,GIMAP8,LRRC61,RARRES2,REPIN1,ZBED6CL,ZNF775"
TCGA.AZ.6600	7	149847286	149890324	3	1.3747	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6460	7	149847286	149890324	3	1.7075	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6704	7	149940827	149988106	3	1.5953	LARGE-GAIN	FOCAL	1	ACTR3C
TCGA.AA.A00N.01A	7	150266922	150324775	3	1.5035	LARGE-GAIN	FOCAL	2	"GIMAP4,GIMAP6"
TCGA.AA.A00N.01A	7	150553540	150558079	4	1.0329	LARGE-GAIN	FOCAL	1	AOC1
TCGA.AG.A01W.01A	7	150562005	150673338	16	0.9042	LARGE-GAIN	FOCAL	1	KCNH2
TCGA.AM.5820	7	150730998	150772916	9	1.1809	LARGE-GAIN	FOCAL	4	"ABCB8,ASIC3,CDK5,SLC4A2"
TCGA.AG.3906.01A	7	150741008	150779230	32	0.7236	LARGE-GAIN	FOCAL	6	"ABCB8,ASIC3,CDK5,FASTK,SLC4A2,TMUB1"
TCGA.AG.3891.01A	7	150813813	150817034	6	1.1688	LARGE-GAIN	FOCAL	1	AGAP3
TCGA.AG.3906.01A	7	150813813	150817034	6	1.9832	LARGE-GAIN	FOCAL	1	AGAP3
TCGA.AG.3906.01A	7	150933472	150945523	11	1.1581	LARGE-GAIN	FOCAL	2	"CHPF2,SMARCD3"
TCGA.AY.4070	7	150976658	151114123	61	0.7591	LARGE-GAIN	FOCAL	2	"NUB1,WDR86"
TCGA.AM.5820	7	151076573	151091889	9	0.7725	LARGE-GAIN	FOCAL	1	WDR86
TCGA.AA.A00N.01A	7	151853289	152027639	47	0.7316	LARGE-GAIN	FOCAL	1	KMT2C
TCGA.CK.5914.01A	7	151868289	152132661	42	0.7715	LARGE-GAIN	FOCAL	1	KMT2C
TCGA.AZ.4684.01A	7	151882582	151970742	27	0.8297	LARGE-GAIN	FOCAL	1	KMT2C
TCGA.AA.3861.01A	7	151919020	151944947	9	3.4559	LARGE-GAIN	FOCAL	1	KMT2C
TCGA.AA.3862.01A	7	151919020	151944947	9	3.3823	LARGE-GAIN	FOCAL	1	KMT2C
TCGA.AA.3941	7	152118662	152653502	103	0.9139	LARGE-GAIN	FOCAL	3	"ACTR3B,KMT2C,XRCC2"
TCGA.CK.5914.01A	7	152373048	152513517	6	0.88	LARGE-GAIN	FOCAL	2	"ACTR3B,XRCC2"
TCGA.AA.3861.01A	7	152498654	152517357	4	2.8447	LARGE-GAIN	FOCAL	1	ACTR3B
TCGA.AA.3862.01A	7	152498654	152517357	4	2.989	LARGE-GAIN	FOCAL	1	ACTR3B
TCGA.DM.A1D6	7	153402083	153524513	14	0.978	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	7	154437098	154710579	153	0.7315	LARGE-GAIN	FOCAL	1	DPP6
TCGA.AA.A010.01A	7	154860852	154989894	6	0.7371	LARGE-GAIN	FOCAL	1	HTR5A
TCGA.A6.6648	7	154861047	154861768	3	1.2128	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6653	7	154861047	154861768	3	0.833	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	7	154861047	155293051	224	0.7907	LARGE-GAIN	FOCAL	3	"EN2,HTR5A,INSIG1"
TCGA.DC.4745	7	154984605	154995148	7	0.9787	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00F.01A	7	155089959	155099944	6	0.9347	LARGE-GAIN	FOCAL	1	INSIG1
TCGA.AA.3941	7	155301892	155644492	98	0.7413	LARGE-GAIN	FOCAL	3	"CNPY1,RBM33,SHH"
TCGA.AA.3982	7	156314033	156314271	3	1.6076	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	7	156518083	156556316	9	0.7194	LARGE-GAIN	FOCAL	1	LMBR1
TCGA.AG.3906.01A	7	156742763	156754798	5	0.9752	LARGE-GAIN	FOCAL	1	NOM1
TCGA.AG.3909.01A	7	156798227	157041034	19	0.8131	LARGE-GAIN	FOCAL	2	"MNX1,UBE3C"
TCGA.AA.3842	7	157069156	157128153	16	0.9384	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3864	7	157514209	157532125	3	1.4312	LARGE-GAIN	FOCAL	1	PTPRN2
TCGA.AA.3866	7	157514209	157534104	4	1.1997	LARGE-GAIN	FOCAL	1	PTPRN2
TCGA.AA.3872	7	157514209	157534104	4	1.8005	LARGE-GAIN	FOCAL	1	PTPRN2
TCGA.AM.5820	7	158044534	158076036	12	0.968	LARGE-GAIN	FOCAL	1	PTPRN2
TCGA.AG.A014.01A	7	158718850	158719609	2	2.686	LARGE-GAIN	FOCAL	1	WDR60
TCGA.A6.5665	7	158972564	159119219	38	0.7836	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	7	159067014	159119219	10	0.7003	LARGE-GAIN	FOCAL	0	None
TCGA.CM.5860	7	159105576	159116964	3	0.941	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	8	164983	2206485	927	0.7867	LARGE-GAIN	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.A00L.01A	8	192887	401252	10	0.7514	LARGE-GAIN	FOCAL	2	"FBXO25,ZNF596"
TCGA.AG.3893	8	212122	854081	261	0.8229	LARGE-GAIN	FOCAL	3	"ERICH1,FBXO25,TDRP"
TCGA.4T.AA8H	8	237332	237695	5	1.3091	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	8	399940	418658	6	1.2826	LARGE-GAIN	FOCAL	1	FBXO25
TCGA.AA.A00L.01A	8	1806114	2088596	57	0.7632	LARGE-GAIN	FOCAL	3	"ARHGEF10,KBTBD11,MYOM2"
TCGA.AG.A02X.01A	8	1876543	1877425	2	2.9848	LARGE-GAIN	FOCAL	1	ARHGEF10
TCGA.DM.A1HB	8	2120086	2129546	11	1.341	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	8	2796055	3889400	66	1.0456	LARGE-GAIN	FOCAL	1	CSMD1
TCGA.AA.A00Q.01A	8	2886802	6301924	7	0.8258	LARGE-GAIN	FOCAL	2	"CSMD1,MCPH1"
TCGA.DM.A1HB	8	3643386	3644684	7	0.928	LARGE-GAIN	FOCAL	1	CSMD1
TCGA.AA.A010.01A	8	3855387	6500461	28	0.8105	LARGE-GAIN	FOCAL	3	"ANGPT2,CSMD1,MCPH1"
TCGA.DM.A1DA	8	4026978	4029073	4	1.0487	LARGE-GAIN	FOCAL	1	CSMD1
TCGA.DM.A1DA	8	4031611	4067802	49	0.6977	LARGE-GAIN	FOCAL	1	CSMD1
TCGA.DM.A1DA	8	4067829	4077189	19	0.9735	LARGE-GAIN	FOCAL	1	CSMD1
TCGA.DM.A1HB	8	4519945	4527866	11	0.8513	LARGE-GAIN	FOCAL	1	CSMD1
TCGA.AA.3502	8	4666653	4676577	18	1.0968	LARGE-GAIN	FOCAL	1	CSMD1
TCGA.AZ.4682	8	4666653	4676577	18	0.7801	LARGE-GAIN	FOCAL	1	CSMD1
TCGA.DM.A1HB	8	5525662	5526513	3	1.5321	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	8	5887259	5918412	21	0.798	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6780	8	6431665	6432664	3	1.31	LARGE-GAIN	FOCAL	1	MCPH1
TCGA.AA.3941	8	8150341	8474923	184	0.7116	LARGE-GAIN	FOCAL	1	SGK223
TCGA.AA.3941	8	8500332	9511708	565	0.7103	LARGE-GAIN	FOCAL	5	"CLDN23,ERI1,MFHAS1,PPP1R3B,TNKS"
TCGA.AG.3906.01A	8	8747519	8747934	2	1.5428	LARGE-GAIN	FOCAL	1	MFHAS1
TCGA.AA.A00N.01A	8	9562139	9627625	21	0.9344	LARGE-GAIN	FOCAL	1	TNKS
TCGA.AA.A00N.01A	8	10285610	10395944	6	0.8162	LARGE-GAIN	FOCAL	2	"MSRA,PRSS55"
TCGA.D5.6538	8	11009668	11010825	5	1.626	LARGE-GAIN	FOCAL	1	XKR6
TCGA.DM.A1HB	8	14476251	14481499	9	0.7742	LARGE-GAIN	FOCAL	1	SGCZ
TCGA.AZ.6598	8	15963079	15993404	20	1.0657	LARGE-GAIN	FOCAL	1	MSR1
TCGA.AA.A00N.01A	8	19819587	20054876	16	0.7847	LARGE-GAIN	FOCAL	3	"ATP6V1B2,LPL,SLC18A1"
TCGA.AA.3941	8	19915789	20046579	61	0.7196	LARGE-GAIN	FOCAL	1	SLC18A1
TCGA.AA.A010.01A	8	20107266	21608063	9	0.8656	LARGE-GAIN	FOCAL	2	"GFRA2,LZTS1"
TCGA.AA.A00N.01A	8	21832134	21847789	12	0.816	LARGE-GAIN	FOCAL	1	XPO7
TCGA.AG.3906.01A	8	21890591	21955532	16	1.4974	LARGE-GAIN	FOCAL	4	"DMTN,FAM160B2,FGF17,NPM2"
TCGA.AG.3891.01A	8	21891568	21957164	23	0.8521	LARGE-GAIN	FOCAL	4	"DMTN,FAM160B2,FGF17,NPM2"
TCGA.AG.3906.01A	8	22005652	22020911	9	1.3781	LARGE-GAIN	FOCAL	2	"LGI3,SFTPC"
TCGA.AG.3891.01A	8	22006183	22031063	11	1.1345	LARGE-GAIN	FOCAL	3	"BMP1,LGI3,SFTPC"
TCGA.AG.3906.01A	8	22021349	22051533	9	0.7426	LARGE-GAIN	FOCAL	2	"BMP1,SFTPC"
TCGA.AG.3906.01A	8	22547955	22584613	6	1.1635	LARGE-GAIN	FOCAL	2	"EGR3,PEBP4"
TCGA.AA.A010.01A	8	22926217	23106675	26	0.7941	LARGE-GAIN	FOCAL	5	"CHMP7,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D"
TCGA.AA.A010.01A	8	23159509	23290408	12	0.9688	LARGE-GAIN	FOCAL	2	"ENTPD4,LOXL2"
TCGA.AA.A00N.01A	8	24187458	24326237	34	1.0363	LARGE-GAIN	FOCAL	3	"ADAM28,ADAM7,ADAMDEC1"
TCGA.AA.A010.01A	8	24190121	24199062	4	0.8597	LARGE-GAIN	FOCAL	1	ADAM28
TCGA.AA.A00N.01A	8	24812989	25268668	54	0.7833	LARGE-GAIN	FOCAL	2	"DOCK5,NEFL"
TCGA.AA.3941	8	26022937	26515471	197	0.7567	LARGE-GAIN	FOCAL	4	"BNIP3L,DPYSL2,PNMA2,PPP2R2A"
TCGA.CK.4952.01A	8	26296513	26541240	14	0.7518	LARGE-GAIN	FOCAL	2	"DPYSL2,PNMA2"
TCGA.AA.A010.01A	8	26481608	27401929	79	0.7981	LARGE-GAIN	FOCAL	7	"ADRA1A,CHRNA2,DPYSL2,EPHX2,PTK2B,STMN4,TRIM35"
TCGA.AA.A00N.01A	8	26485323	27101137	18	1.1201	LARGE-GAIN	FOCAL	3	"ADRA1A,DPYSL2,STMN4"
TCGA.CK.4952.01A	8	26548163	26777484	11	1.5699	LARGE-GAIN	FOCAL	1	ADRA1A
TCGA.AA.3941	8	27093494	27667792	254	0.735	LARGE-GAIN	FOCAL	10	"CCDC25,CHRNA2,CLU,EPHX2,ESCO2,PBK,PTK2B,SCARA3,STMN4,TRIM35"
TCGA.AA.A00N.01A	8	27168266	27348678	36	0.8865	LARGE-GAIN	FOCAL	4	"CHRNA2,EPHX2,PTK2B,TRIM35"
TCGA.AA.A00N.01A	8	27729403	28218423	52	0.8371	LARGE-GAIN	FOCAL	5	"ELP3,NUGGC,PNOC,SCARA5,ZNF395"
TCGA.EI.6511	8	28298392	29746092	435	0.8442	LARGE-GAIN	FOCAL	7	"DUSP4,EXTL3,FBXO16,FZD3,HMBOX1,INTS9,KIF13B"
TCGA.AA.A010.01A	8	28608157	28638328	7	1.1574	LARGE-GAIN	FOCAL	2	"EXTL3,INTS9"
TCGA.AG.3896	8	28971501	29683065	245	0.8813	LARGE-GAIN	FOCAL	2	"DUSP4,KIF13B"
TCGA.D5.6533	8	29115927	29239837	31	0.9915	LARGE-GAIN	FOCAL	2	"DUSP4,KIF13B"
TCGA.G4.6295	8	30717451	30805195	32	0.6828	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A0XA	8	30761617	31170634	136	1.1338	LARGE-GAIN	FOCAL	2	"PURG,WRN"
TCGA.CM.5348	8	30854032	32777961	762	0.9921	LARGE-GAIN	FOCAL	3	"NRG1,PURG,WRN"
TCGA.AA.A00N.01A	8	30933649	31024496	26	0.7958	LARGE-GAIN	FOCAL	1	WRN
TCGA.DM.A28M.01A	8	30946387	30949284	4	1.4519	LARGE-GAIN	FOCAL	1	WRN
TCGA.D5.6533	8	31052811	31155024	37	1.2629	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6533	8	31165191	31406600	76	0.8618	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A0XA	8	31174599	32429463	523	0.77	LARGE-GAIN	FOCAL	1	NRG1
TCGA.AG.A026	8	31252798	31257183	3	0.7717	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6923	8	31630513	31657853	21	0.8209	LARGE-GAIN	FOCAL	1	NRG1
TCGA.CA.6715	8	31913614	31919210	3	1.2376	LARGE-GAIN	FOCAL	1	NRG1
TCGA.AA.3667	8	32197247	32243168	19	0.782	LARGE-GAIN	FOCAL	1	NRG1
TCGA.AA.A00N.01A	8	32505216	32621295	12	1.3619	LARGE-GAIN	FOCAL	1	NRG1
TCGA.D5.6923	8	32646765	35831045	785	0.7319	LARGE-GAIN	FOCAL	6	"DUSP26,FUT10,MAK16,RNF122,TTI2,UNC5D"
TCGA.AA.3941	8	33238980	33497650	61	0.8586	LARGE-GAIN	FOCAL	5	"DUSP26,FUT10,MAK16,RNF122,TTI2"
TCGA.A6.6648	8	33417257	35376537	487	0.8976	LARGE-GAIN	FOCAL	3	"DUSP26,RNF122,UNC5D"
TCGA.CK.4948.01B	8	33454772	35647840	18	0.9768	LARGE-GAIN	FOCAL	2	"DUSP26,UNC5D"
TCGA.AA.A01S	8	34405896	34607378	54	0.77005	LARGE-GAIN	FOCAL	0	None
TCGA.A6.5662	8	34747260	35374131	149	1.023	LARGE-GAIN	FOCAL	1	UNC5D
TCGA.AA.A01S	8	35127963	35586920	119	0.76835	LARGE-GAIN	FOCAL	1	UNC5D
TCGA.CL.5917	8	35178051	36380479	232	0.7849	LARGE-GAIN	FOCAL	1	UNC5D
TCGA.AA.A00N.01A	8	35401936	37553471	46	0.957	LARGE-GAIN	FOCAL	3	"KCNU1,UNC5D,ZNF703"
TCGA.A6.5662	8	35414636	35615145	63	0.8825	LARGE-GAIN	FOCAL	1	UNC5D
TCGA.CA.5797	8	35472863	35550256	23	1.9067	LARGE-GAIN	FOCAL	1	UNC5D
TCGA.AA.A01S	8	35591147	35630101	17	1.10245	LARGE-GAIN	FOCAL	1	UNC5D
TCGA.A6.5662	8	35944474	37645465	420	0.8799	LARGE-GAIN	FOCAL	4	"ERLIN2,KCNU1,PROSC,ZNF703"
TCGA.CM.6172	8	36077058	36380479	61	1.3174	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6923	8	36147473	37527108	387	0.797	LARGE-GAIN	FOCAL	1	KCNU1
TCGA.CM.5860	8	36331510	36357358	10	1.0831	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5912	8	36341658	36357358	5	0.9103	LARGE-GAIN	FOCAL	0	None
TCGA.CM.6172	8	36391229	37073367	189	1.8155	LARGE-GAIN	FOCAL	1	KCNU1
TCGA.AZ.4614	8	36565704	37610505	315	1.2194	LARGE-GAIN	FOCAL	3	"ERLIN2,KCNU1,ZNF703"
TCGA.CK.5912	8	36764934	37309515	214	0.7427	LARGE-GAIN	FOCAL	1	KCNU1
TCGA.CM.6172	8	37073840	37590445	155	1.3245	LARGE-GAIN	FOCAL	1	ZNF703
TCGA.AA.A01Z	8	37455058	37971941	45	1.1038	LARGE-GAIN	FOCAL	10	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,PROSC,RAB11FIP1,ZNF703"
TCGA.AZ.6607	8	37758537	38112805	28	0.7439	LARGE-GAIN	FOCAL	8	"ADRB3,ASH2L,BAG4,DDHD2,EIF4EBP1,GOT1L1,LSM1,STAR"
TCGA.AG.A00C.01A	8	37791759	37821650	9	0.7122	LARGE-GAIN	FOCAL	2	"ADRB3,GOT1L1"
TCGA.AA.3939.01A	8	37791759	37978460	22	0.834	LARGE-GAIN	FOCAL	4	"ADRB3,ASH2L,EIF4EBP1,GOT1L1"
TCGA.AA.A010.01A	8	37822772	38064978	31	0.7634	LARGE-GAIN	FOCAL	6	"ADRB3,ASH2L,BAG4,EIF4EBP1,LSM1,STAR"
TCGA.A6.5656	8	37971941	38043757	18	1.5798	LARGE-GAIN	FOCAL	4	"ASH2L,BAG4,LSM1,STAR"
TCGA.AA.A02K.01A	8	37974109	38261880	73	1.536	LARGE-GAIN	FOCAL	8	"ASH2L,BAG4,DDHD2,LETM2,LSM1,PPAPDC1B,STAR,WHSC1L1"
TCGA.AG.4009.01A	8	37978460	38029446	15	0.7277	LARGE-GAIN	FOCAL	3	"ASH2L,LSM1,STAR"
TCGA.AA.A00N.01A	8	37996263	38008208	7	1.2959	LARGE-GAIN	FOCAL	2	"ASH2L,STAR"
TCGA.AZ.6607	8	38115713	38368269	29	1.1819	LARGE-GAIN	FOCAL	5	"DDHD2,FGFR1,LETM2,PPAPDC1B,WHSC1L1"
TCGA.AA.A01S	8	38133792	38952994	162	1.14765	LARGE-GAIN	FOCAL	9	"ADAM9,C8orf86,FGFR1,HTRA4,LETM2,PLEKHA2,TACC1,TM2D2,WHSC1L1"
TCGA.A6.5656	8	38160042	38243864	7	1.8075	LARGE-GAIN	FOCAL	1	WHSC1L1
TCGA.AZ.4681	8	38160042	38299418	13	1.5779	LARGE-GAIN	FOCAL	3	"FGFR1,LETM2,WHSC1L1"
TCGA.AA.3858	8	38160042	38573764	100	1.1709	LARGE-GAIN	FOCAL	4	"C8orf86,FGFR1,LETM2,WHSC1L1"
TCGA.AF.3911	8	38160042	38681075	112	0.8342	LARGE-GAIN	FOCAL	5	"C8orf86,FGFR1,LETM2,TACC1,WHSC1L1"
TCGA.DY.A1DG	8	38160042	38782626	135	1.7995	LARGE-GAIN	FOCAL	6	"C8orf86,FGFR1,LETM2,PLEKHA2,TACC1,WHSC1L1"
TCGA.CI.6623	8	38165071	38457104	61	0.9605	LARGE-GAIN	FOCAL	4	"C8orf86,FGFR1,LETM2,WHSC1L1"
TCGA.NH.A6GB	8	38226276	38468680	60	1.1873	LARGE-GAIN	FOCAL	4	"C8orf86,FGFR1,LETM2,WHSC1L1"
TCGA.AA.A02K.01A	8	38264409	38385830	22	1.1063	LARGE-GAIN	FOCAL	3	"C8orf86,FGFR1,LETM2"
TCGA.F5.6811.01A	8	38297695	38504946	37	2.4473	LARGE-GAIN	FOCAL	2	"C8orf86,FGFR1"
TCGA.AZ.4681	8	38317397	38730893	108	1.9014	LARGE-GAIN	FOCAL	3	"C8orf86,FGFR1,TACC1"
TCGA.AA.3858	8	38574365	38884175	54	0.893	LARGE-GAIN	FOCAL	5	"ADAM9,HTRA4,PLEKHA2,TACC1,TM2D2"
TCGA.AZ.4681	8	38731085	39948960	253	1.4684	LARGE-GAIN	FOCAL	9	"ADAM18,ADAM2,ADAM32,ADAM9,HTRA4,IDO1,IDO2,PLEKHA2,TM2D2"
TCGA.AG.A02X.01A	8	38809633	38810751	3	3.7401	LARGE-GAIN	FOCAL	1	PLEKHA2
TCGA.NH.A6GB	8	38817411	40181182	356	0.8025	LARGE-GAIN	FOCAL	10	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,HTRA4,IDO1,IDO2,PLEKHA2,TM2D2"
TCGA.A6.3808.01A	8	38854555	39068613	33	1.1476	LARGE-GAIN	FOCAL	2	"ADAM32,ADAM9"
TCGA.AG.A02X.01A	8	39044378	39114694	9	4.4686	LARGE-GAIN	FOCAL	1	ADAM32
TCGA.AA.A00N.01A	8	39068613	41122700	81	0.7834	LARGE-GAIN	FOCAL	8	"ADAM18,ADAM2,ADAM32,C8orf4,IDO1,IDO2,SFRP1,ZMAT4"
TCGA.A6.3808.01A	8	39079075	39114694	6	2.9901	LARGE-GAIN	FOCAL	1	ADAM32
TCGA.CK.4948.01B	8	39079075	40011030	73	0.933	LARGE-GAIN	FOCAL	6	"ADAM18,ADAM2,ADAM32,C8orf4,IDO1,IDO2"
TCGA.AF.2693	8	39403893	39793680	78	1.3876	LARGE-GAIN	FOCAL	4	"ADAM18,ADAM2,IDO1,IDO2"
TCGA.AZ.6607	8	39431137	39543457	23	1.0366	LARGE-GAIN	FOCAL	1	ADAM18
TCGA.AA.3509.01A	8	39466519	39564272	14	1.0805	LARGE-GAIN	FOCAL	1	ADAM18
TCGA.DY.A1DC	8	39555707	39577962	7	1.2326	LARGE-GAIN	FOCAL	1	ADAM18
TCGA.AZ.6607	8	39565080	39599377	16	0.8187	LARGE-GAIN	FOCAL	1	ADAM18
TCGA.AZ.6607	8	39604490	40154858	224	1.1116	LARGE-GAIN	FOCAL	4	"ADAM2,C8orf4,IDO1,IDO2"
TCGA.DM.A282.01A	8	39644437	39646125	3	0.7939	LARGE-GAIN	FOCAL	1	ADAM2
TCGA.AG.3893	8	39678722	39820618	32	0.9493	LARGE-GAIN	FOCAL	3	"ADAM2,IDO1,IDO2"
TCGA.AF.2693	8	39793713	39830699	21	1.1065	LARGE-GAIN	FOCAL	1	IDO2
TCGA.AF.2693	8	39834818	39948960	62	0.9452	LARGE-GAIN	FOCAL	1	IDO2
TCGA.AF.2693	8	40020905	40033475	4	1.0494	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.6607	8	40158718	40614508	226	1.3942	LARGE-GAIN	FOCAL	1	ZMAT4
TCGA.AA.A01S	8	40283140	41426685	402	1.01645	LARGE-GAIN	FOCAL	4	"GINS4,GOLGA7,SFRP1,ZMAT4"
TCGA.CM.6172	8	40451700	40673945	83	1.5033	LARGE-GAIN	FOCAL	1	ZMAT4
TCGA.AA.3494	8	40586674	41372001	241	1.4998	LARGE-GAIN	FOCAL	3	"GOLGA7,SFRP1,ZMAT4"
TCGA.CM.6172	8	40674407	41491139	247	1.9427	LARGE-GAIN	FOCAL	5	"AGPAT6,GINS4,GOLGA7,SFRP1,ZMAT4"
TCGA.AA.A00D.01A	8	40683047	41513170	26	2.0255	LARGE-GAIN	FOCAL	7	"AGPAT6,ANK1,GINS4,GOLGA7,NKX6-3,SFRP1,ZMAT4"
TCGA.AA.A01Z	8	40965680	40971674	3	1.4948	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6805	8	41061994	41206780	41	1.1184	LARGE-GAIN	FOCAL	1	SFRP1
TCGA.AG.A00Y.01A	8	41160921	41591437	58	1.4083	LARGE-GAIN	FOCAL	6	"AGPAT6,ANK1,GINS4,GOLGA7,NKX6-3,SFRP1"
TCGA.F4.6805	8	41275221	41591273	102	1.0176	LARGE-GAIN	FOCAL	5	"AGPAT6,ANK1,GINS4,GOLGA7,NKX6-3"
TCGA.CM.6172	8	41501437	41538285	17	1.6455	LARGE-GAIN	FOCAL	2	"ANK1,NKX6-3"
TCGA.AA.A00D.01A	8	41518933	41542024	7	0.9076	LARGE-GAIN	FOCAL	1	ANK1
TCGA.CM.6172	8	41538870	41632229	50	1.356	LARGE-GAIN	FOCAL	1	ANK1
TCGA.AA.A00D.01A	8	41543622	41812762	43	1.2308	LARGE-GAIN	FOCAL	2	"ANK1,KAT6A"
TCGA.A6.5657	8	41585383	41632229	27	0.9418	LARGE-GAIN	FOCAL	1	ANK1
TCGA.AD.6901	8	41618212	42032378	98	0.8355	LARGE-GAIN	FOCAL	4	"ANK1,AP3M2,KAT6A,PLAT"
TCGA.CM.6172	8	41637359	41666873	13	1.6726	LARGE-GAIN	FOCAL	1	ANK1
TCGA.AA.3858	8	41767253	42425398	117	0.8502	LARGE-GAIN	FOCAL	9	"AP3M2,DKK4,IKBKB,KAT6A,PLAT,POLB,SLC20A2,SMIM19,VDAC3"
TCGA.CA.5797	8	41783168	42552632	141	2.01	LARGE-GAIN	FOCAL	10	"AP3M2,CHRNB3,DKK4,IKBKB,KAT6A,PLAT,POLB,SLC20A2,SMIM19,VDAC3"
TCGA.AA.A00N.01A	8	41812762	41844922	8	1.0382	LARGE-GAIN	FOCAL	1	KAT6A
TCGA.AA.A00D.01A	8	41814527	41844922	7	0.8869	LARGE-GAIN	FOCAL	1	KAT6A
TCGA.AA.A00D.01A	8	41905845	42026442	9	1.7568	LARGE-GAIN	FOCAL	2	"AP3M2,KAT6A"
TCGA.AA.A00D.01A	8	42033459	42174187	22	1.0936	LARGE-GAIN	FOCAL	2	"IKBKB,PLAT"
TCGA.AA.A010.01A	8	42037397	42226720	40	0.7143	LARGE-GAIN	FOCAL	3	"IKBKB,PLAT,POLB"
TCGA.AA.A00D.01A	8	42175133	42320464	42	1.6129	LARGE-GAIN	FOCAL	5	"DKK4,IKBKB,POLB,SLC20A2,VDAC3"
TCGA.DY.A0XA	8	42264110	42306812	7	0.715	LARGE-GAIN	FOCAL	1	SLC20A2
TCGA.AA.A010.01A	8	42275319	42329603	10	0.6991	LARGE-GAIN	FOCAL	1	SLC20A2
TCGA.AG.3891.01A	8	42320464	42407620	6	0.8882	LARGE-GAIN	FOCAL	2	"SLC20A2,SMIM19"
TCGA.AA.A010.01A	8	42552629	42623435	12	0.7278	LARGE-GAIN	FOCAL	2	"CHRNA6,CHRNB3"
TCGA.NH.A6GB	8	42834598	43520354	53	0.7075	LARGE-GAIN	FOCAL	5	"FNTA,HGSNAT,HOOK3,POMK,POTEA"
TCGA.CK.5912	8	42858298	46924210	62	1.0425	LARGE-GAIN	FOCAL	5	"FNTA,HGSNAT,HOOK3,POMK,POTEA"
TCGA.CM.6676	8	43027009	43778913	54	0.7233	LARGE-GAIN	FOCAL	2	"HGSNAT,POTEA"
TCGA.AA.3509.01A	8	43152111	43196946	8	1.8096	LARGE-GAIN	FOCAL	1	POTEA
TCGA.AZ.4684.01A	8	43152111	48641923	22	0.9283	LARGE-GAIN	FOCAL	2	"POTEA,SPIDR"
TCGA.CM.6166	8	43215239	43253797	5	0.8399	LARGE-GAIN	FOCAL	1	POTEA
TCGA.AA.3514	8	43413954	47385091	47	0.8453	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	8	43455242	43762680	6	1.8523	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A280	8	43499144	43778913	9	1.3613	LARGE-GAIN	FOCAL	0	None
TCGA.EF.5830	8	43762680	47397088	32	0.7831	LARGE-GAIN	FOCAL	0	None
TCGA.CM.6172	8	46936839	48595344	167	1.4498	LARGE-GAIN	FOCAL	1	SPIDR
TCGA.DM.A1D9	8	47385091	47429008	7	1.2066	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A280	8	47397088	47448837	7	0.8599	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01S	8	47489590	50085238	391	1.32455	LARGE-GAIN	FOCAL	8	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,SNAI2,SPIDR,UBE2V2"
TCGA.AA.3941	8	48326529	49551143	151	0.6983	LARGE-GAIN	FOCAL	5	"CEBPD,MCM4,PRKDC,SPIDR,UBE2V2"
TCGA.AA.A010.01A	8	48649821	48826443	61	0.7598	LARGE-GAIN	FOCAL	2	"CEBPD,PRKDC"
TCGA.AG.A01W.01A	8	48810394	48858789	8	0.8186	LARGE-GAIN	FOCAL	1	PRKDC
TCGA.AA.A00D.01A	8	48874036	49643860	18	1.0933	LARGE-GAIN	FOCAL	3	"EFCAB1,MCM4,UBE2V2"
TCGA.AG.A01W.01A	8	48892519	48911417	11	0.8756	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	8	49036590	49042452	6	0.8144	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A024.01A	8	49641554	49643860	4	1.9448	LARGE-GAIN	FOCAL	1	EFCAB1
TCGA.AZ.4684.01A	8	49641554	52233297	29	0.8179	LARGE-GAIN	FOCAL	5	"C8orf22,EFCAB1,PXDNL,SNAI2,SNTG1"
TCGA.AA.A00N.01A	8	49985331	52258361	23	0.7331	LARGE-GAIN	FOCAL	3	"C8orf22,PXDNL,SNTG1"
TCGA.CI.6623	8	50177245	50187499	3	1.5161	LARGE-GAIN	FOCAL	0	None
TCGA.AH.6547	8	50180557	50189360	3	1.651	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01Z	8	50625292	50674903	14	0.7916	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5821	8	50658767	50703870	12	0.9942	LARGE-GAIN	FOCAL	0	None
TCGA.A6.2680	8	50664996	50673566	3	2.0942	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3896	8	51205061	54432736	999	0.8015	LARGE-GAIN	FOCAL	8	"FAM150A,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,SNTG1,ST18"
TCGA.CA.5797	8	51827237	52024890	41	0.7304	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	8	52321227	52325663	4	0.9434	LARGE-GAIN	FOCAL	1	PXDNL
TCGA.CM.6172	8	52601571	53479598	311	1.1546	LARGE-GAIN	FOCAL	4	"FAM150A,PCMTD1,PXDNL,ST18"
TCGA.A6.5656	8	52713005	52841869	32	0.7546	LARGE-GAIN	FOCAL	2	"PCMTD1,PXDNL"
TCGA.A6.5656	8	52887540	54383225	512	0.7973	LARGE-GAIN	FOCAL	5	"FAM150A,NPBWR1,OPRK1,RB1CC1,ST18"
TCGA.CM.6172	8	53488241	53846497	91	1.863	LARGE-GAIN	FOCAL	1	RB1CC1
TCGA.AG.3906.01A	8	54974762	55055176	7	0.7342	LARGE-GAIN	FOCAL	2	"LYPLA1,MRPL15"
TCGA.AZ.6598	8	56727978	56932272	75	0.9591	LARGE-GAIN	FOCAL	2	"LYN,TGS1"
TCGA.AG.3906.01A	8	57125340	57219205	7	0.7592	LARGE-GAIN	FOCAL	2	"CHCHD7,SDR16C5"
TCGA.AG.4015	8	57513081	57515962	3	1.8625	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	8	59058743	59409176	15	0.7286	LARGE-GAIN	FOCAL	3	"CYP7A1,FAM110B,UBXN2B"
TCGA.AZ.4684.01A	8	59410746	59483435	4	2.3036	LARGE-GAIN	FOCAL	2	"CYP7A1,SDCBP"
TCGA.AZ.4684.01A	8	59484717	61429703	50	0.7413	LARGE-GAIN	FOCAL	5	"CA8,NSMAF,RAB2A,SDCBP,TOX"
TCGA.AG.3883	8	59623132	59628604	3	1.2839	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	8	59707984	59712592	7	1.564	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	8	59712890	60644773	262	0.6862	LARGE-GAIN	FOCAL	1	TOX
TCGA.CM.6172	8	60024448	61658361	429	0.712	LARGE-GAIN	FOCAL	4	"CA8,CHD7,RAB2A,TOX"
TCGA.DY.A1DC	8	60650601	60654260	3	2.3146	LARGE-GAIN	FOCAL	0	None
TCGA.A6.5666	8	60921426	64387106	1131	0.6831	LARGE-GAIN	FOCAL	9	"ASPH,CA8,CHD7,CLVS1,GGH,NKAIN3,RAB2A,TTPA,YTHDF3"
TCGA.AA.3982	8	61010263	62844513	629	0.6814	LARGE-GAIN	FOCAL	5	"ASPH,CA8,CHD7,CLVS1,RAB2A"
TCGA.DM.A28F	8	61060851	61112593	14	0.8819	LARGE-GAIN	FOCAL	1	CA8
TCGA.AZ.4684.01A	8	61471405	63985467	94	1.4139	LARGE-GAIN	FOCAL	7	"ASPH,CHD7,CLVS1,GGH,NKAIN3,RAB2A,TTPA"
TCGA.DM.A1HB	8	62381934	62386706	5	0.7873	LARGE-GAIN	FOCAL	1	CLVS1
TCGA.CK.5914.01A	8	62538747	63502216	21	0.7749	LARGE-GAIN	FOCAL	2	"ASPH,NKAIN3"
TCGA.AG.3896	8	65568328	66963988	278	0.7954	LARGE-GAIN	FOCAL	5	"ARMC1,CYP7B1,DNAJC5B,MTFR1,PDE7A"
TCGA.AA.3982	8	66326000	67211175	202	0.75	LARGE-GAIN	FOCAL	6	"ARMC1,CRH,DNAJC5B,MTFR1,PDE7A,TRIM55"
TCGA.CK.5914.01A	8	67364158	67372496	6	0.6854	LARGE-GAIN	FOCAL	1	ADHFE1
TCGA.AA.A00N.01A	8	68105659	68189476	30	0.7856	LARGE-GAIN	FOCAL	2	"ARFGEF1,CSPP1"
TCGA.CK.4948.01B	8	68137101	68145067	6	0.8631	LARGE-GAIN	FOCAL	1	ARFGEF1
TCGA.AZ.4684.01A	8	68137101	68204030	20	1.936	LARGE-GAIN	FOCAL	1	ARFGEF1
TCGA.DM.A28M.01A	8	68138217	68145067	5	1.3689	LARGE-GAIN	FOCAL	1	ARFGEF1
TCGA.AZ.4684.01A	8	68208638	68931742	19	0.7612	LARGE-GAIN	FOCAL	3	"ARFGEF1,CPA6,PREX2"
TCGA.AA.A00N.01A	8	68334712	70515400	71	0.7853	LARGE-GAIN	FOCAL	4	"C8orf34,CPA6,PREX2,SULF1"
TCGA.AZ.4684.01A	8	68939405	70476162	48	1.692	LARGE-GAIN	FOCAL	3	"C8orf34,PREX2,SULF1"
TCGA.AF.3913	8	69895020	70199860	119	0.8032	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	8	70437215	71464980	278	0.7889	LARGE-GAIN	FOCAL	4	"NCOA2,PRDM14,SLCO5A1,SULF1"
TCGA.AZ.4684.01A	8	70488168	71646021	72	1.1326	LARGE-GAIN	FOCAL	7	"LACTB2,NCOA2,PRDM14,SLCO5A1,SULF1,TRAM1,XKR9"
TCGA.AA.A00N.01A	8	71033485	71128837	20	1.0559	LARGE-GAIN	FOCAL	1	NCOA2
TCGA.AA.3982	8	71518370	71663804	22	0.8149	LARGE-GAIN	FOCAL	3	"LACTB2,TRAM1,XKR9"
TCGA.AA.3982	8	73860727	74372606	220	0.8466	LARGE-GAIN	FOCAL	6	"C8orf89,RDH10,RPL7,SBSPON,STAU2,TERF1"
TCGA.AG.A01W.01A	8	74366982	74371966	4	1.285	LARGE-GAIN	FOCAL	1	STAU2
TCGA.AA.3982	8	74392899	74402276	10	0.7512	LARGE-GAIN	FOCAL	1	STAU2
TCGA.AA.3982	8	74423328	75307830	272	0.7339	LARGE-GAIN	FOCAL	7	"GDAP1,JPH1,LY96,STAU2,TCEB1,TMEM70,UBE2W"
TCGA.A6.3807	8	75254085	78108033	732	0.8944	LARGE-GAIN	FOCAL	6	"CRISPLD1,GDAP1,HNF4G,PEX2,PI15,ZFHX4"
TCGA.DY.A1DC	8	78814587	78827616	14	1.5712	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3896	8	79730457	80669114	264	0.8212	LARGE-GAIN	FOCAL	1	STMN2
TCGA.AG.3731	8	80240145	81476364	315	0.9664	LARGE-GAIN	FOCAL	5	"HEY1,MRPS28,STMN2,TPD52,ZBTB10"
TCGA.AA.3982	8	80431799	82353077	516	0.7376	LARGE-GAIN	FOCAL	9	"FABP5,HEY1,MRPS28,PAG1,PMP2,STMN2,TPD52,ZBTB10,ZNF704"
TCGA.AG.3896	8	80669278	81475568	193	1.2304	LARGE-GAIN	FOCAL	4	"HEY1,MRPS28,TPD52,ZBTB10"
TCGA.AG.3891.01A	8	80678830	80679210	2	1.4427	LARGE-GAIN	FOCAL	1	HEY1
TCGA.AG.3906.01A	8	80678830	80679210	2	1.4917	LARGE-GAIN	FOCAL	1	HEY1
TCGA.AA.3941	8	80979995	81576964	152	0.7838	LARGE-GAIN	FOCAL	3	"TPD52,ZBTB10,ZNF704"
TCGA.A6.2677	8	80980661	81276112	68	1.1747	LARGE-GAIN	FOCAL	1	TPD52
TCGA.G4.6311	8	81095394	81100969	3	1.1126	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6652	8	81705395	82092488	140	1.7027	LARGE-GAIN	FOCAL	2	"PAG1,ZNF704"
TCGA.A6.6652	8	82095650	83198896	243	1.2969	LARGE-GAIN	FOCAL	10	"CHMP4C,FABP12,FABP4,FABP5,FABP9,IMPA1,PMP2,SLC10A5,SNX16,ZFAND1"
TCGA.DM.A282.01A	8	82714578	82727498	3	0.9441	LARGE-GAIN	FOCAL	1	SNX16
TCGA.AG.A01Y	8	83758928	84025584	75	0.8181	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01Y	8	84030396	84906511	194	1.1609	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	8	86036989	87076152	51	0.7831	LARGE-GAIN	FOCAL	8	"C8orf59,CA1,CA13,CA2,CA3,E2F5,LRRCC1,PSKH2"
TCGA.AA.3556	8	86114650	86142724	5	1.8868	LARGE-GAIN	FOCAL	2	"C8orf59,E2F5"
TCGA.AA.A00D.01A	8	87163636	87450807	18	1.1821	LARGE-GAIN	FOCAL	3	"ATP6V0D2,SLC7A13,WWP1"
TCGA.AG.3906.01A	8	87423729	87447668	6	1.0183	LARGE-GAIN	FOCAL	1	WWP1
TCGA.AA.A00D.01A	8	87454811	87500743	15	0.7462	LARGE-GAIN	FOCAL	2	"RMDN1,WWP1"
TCGA.AA.A00D.01A	8	87519175	87558796	9	1.1763	LARGE-GAIN	FOCAL	2	"CPNE3,RMDN1"
TCGA.AA.A00N.01A	8	87556941	89209337	48	0.7072	LARGE-GAIN	FOCAL	5	"CNBD1,CNGB3,CPNE3,DCAF4L2,MMP16"
TCGA.CK.4948.01B	8	87644933	87659972	4	1.0281	LARGE-GAIN	FOCAL	1	CNGB3
TCGA.DY.A1DC	8	88284635	88295981	10	1.6398	LARGE-GAIN	FOCAL	1	CNBD1
TCGA.AY.6196	8	89670066	89711076	3	1.3089	LARGE-GAIN	FOCAL	0	None
TCGA.EF.5830	8	90475374	90558934	14	0.757	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	8	90656738	90991143	93	0.7699	LARGE-GAIN	FOCAL	3	"NBN,OSGIN2,RIPK2"
TCGA.AA.A010.01A	8	90993553	91013669	5	1.5463	LARGE-GAIN	FOCAL	2	"DECR1,NBN"
TCGA.AA.A00N.01A	8	92114842	93029407	34	1.0603	LARGE-GAIN	FOCAL	3	"LRRC69,RUNX1T1,SLC26A7"
TCGA.G4.6311	8	92688622	92725916	5	1.0669	LARGE-GAIN	FOCAL	0	None
TCGA.A6.5666	8	93336302	95238032	516	0.6923	LARGE-GAIN	FOCAL	7	"C8orf87,CDH17,FAM92A1,PDP1,RBM12B,TMEM67,TRIQK"
TCGA.AG.A016.01A	8	94767994	94800023	11	1.1714	LARGE-GAIN	FOCAL	1	TMEM67
TCGA.AG.A016.01A	8	94803468	95507040	54	0.7549	LARGE-GAIN	FOCAL	7	"CDH17,FSBP,GEM,KIAA1429,PDP1,RAD54B,TMEM67"
TCGA.AG.3906.01A	8	94934202	94935365	3	0.9218	LARGE-GAIN	FOCAL	1	PDP1
TCGA.AA.A00N.01A	8	95158107	95262506	14	0.7558	LARGE-GAIN	FOCAL	2	"CDH17,GEM"
TCGA.AA.3509.01A	8	95182585	95448770	24	1.0974	LARGE-GAIN	FOCAL	4	"CDH17,FSBP,GEM,RAD54B"
TCGA.AZ.4684.01A	8	95182585	95448770	24	0.7408	LARGE-GAIN	FOCAL	4	"CDH17,FSBP,GEM,RAD54B"
TCGA.AG.A016.01A	8	95518699	95527040	6	1.3092	LARGE-GAIN	FOCAL	1	KIAA1429
TCGA.AA.A00D.01A	8	95793297	95844188	10	1.2907	LARGE-GAIN	FOCAL	2	"DPY19L4,INTS8"
TCGA.AA.A00D.01A	8	95848705	96275862	37	0.9873	LARGE-GAIN	FOCAL	6	"C8orf37,CCNE2,INTS8,NDUFAF6,PLEKHF2,TP53INP1"
TCGA.AG.3906.01A	8	95886704	95953017	16	0.813	LARGE-GAIN	FOCAL	3	"CCNE2,INTS8,TP53INP1"
TCGA.AG.3906.01A	8	96264366	97172515	7	0.7017	LARGE-GAIN	FOCAL	2	"C8orf37,GDF6"
TCGA.AA.3941	8	98299348	98304038	6	1.0377	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	8	98550768	99451866	306	0.6881	LARGE-GAIN	FOCAL	9	"ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,NIPAL2,POP1,RPL30"
TCGA.AA.3930.01A	8	98817564	99033392	18	0.7915	LARGE-GAIN	FOCAL	2	"LAPTM4B,MATN2"
TCGA.CK.5914.01A	8	98900277	99039616	13	0.7493	LARGE-GAIN	FOCAL	1	MATN2
TCGA.AA.3939.01A	8	99057130	99057485	2	1.7207	LARGE-GAIN	FOCAL	1	RPL30
TCGA.AA.3982	8	99569734	100331778	50	0.817	LARGE-GAIN	FOCAL	3	"OSR2,STK3,VPS13B"
TCGA.AA.A00N.01A	8	100115134	100883638	59	0.7361	LARGE-GAIN	FOCAL	1	VPS13B
TCGA.AA.3509.01A	8	100123314	100733039	35	1.0774	LARGE-GAIN	FOCAL	1	VPS13B
TCGA.DM.A28M.01A	8	100146811	100148838	4	1.5715	LARGE-GAIN	FOCAL	1	VPS13B
TCGA.AA.A00D.01A	8	100899694	101251430	22	1.1571	LARGE-GAIN	FOCAL	5	"COX6C,FBXO43,POLR2K,RGS22,SPAG1"
TCGA.AA.A00N.01A	8	101016117	101074769	9	1.0016	LARGE-GAIN	FOCAL	1	RGS22
TCGA.AA.3941	8	101106662	101534732	134	0.6896	LARGE-GAIN	FOCAL	6	"ANKRD46,FBXO43,POLR2K,RGS22,RNF19A,SPAG1"
TCGA.AA.3941	8	101565290	102169084	207	0.823	LARGE-GAIN	FOCAL	4	"ANKRD46,PABPC1,SNX31,YWHAZ"
TCGA.AA.A00D.01A	8	101716476	102212196	17	1.0951	LARGE-GAIN	FOCAL	3	"PABPC1,YWHAZ,ZNF706"
TCGA.A6.2677	8	101760659	102163099	123	0.8697	LARGE-GAIN	FOCAL	1	YWHAZ
TCGA.AG.3731	8	101840078	102293472	157	1.0794	LARGE-GAIN	FOCAL	2	"YWHAZ,ZNF706"
TCGA.AA.A00N.01A	8	102555442	103220321	19	0.7764	LARGE-GAIN	FOCAL	3	"GRHL2,NCALD,RRM2B"
TCGA.AG.3909.01A	8	102555442	103226234	21	0.7315	LARGE-GAIN	FOCAL	3	"GRHL2,NCALD,RRM2B"
TCGA.AA.3982	8	103057851	103142447	34	0.8961	LARGE-GAIN	FOCAL	1	NCALD
TCGA.AA.3941	8	103195632	103203726	11	0.6944	LARGE-GAIN	FOCAL	0	None
TCGA.A6.2677	8	103208027	103498787	31	0.996	LARGE-GAIN	FOCAL	2	"RRM2B,UBR5"
TCGA.AA.3941	8	103234167	104060259	205	0.8059	LARGE-GAIN	FOCAL	6	"ATP6V1C1,AZIN1,KLF10,ODF1,RRM2B,UBR5"
TCGA.AA.3982	8	103234167	104060259	207	0.9666	LARGE-GAIN	FOCAL	6	"ATP6V1C1,AZIN1,KLF10,ODF1,RRM2B,UBR5"
TCGA.AA.A00N.01A	8	103282220	103572661	44	0.7086	LARGE-GAIN	FOCAL	2	"ODF1,UBR5"
TCGA.AG.A016.01A	8	103301650	103316234	10	1.3628	LARGE-GAIN	FOCAL	1	UBR5
TCGA.AA.3509.01A	8	103307173	103326922	14	1.5245	LARGE-GAIN	FOCAL	1	UBR5
TCGA.AZ.4684.01A	8	103307173	103326922	14	2.7585	LARGE-GAIN	FOCAL	1	UBR5
TCGA.AG.A01W.01A	8	103320168	103343273	6	0.9189	LARGE-GAIN	FOCAL	1	UBR5
TCGA.AG.A01W.01A	8	103374963	103386451	10	1.2581	LARGE-GAIN	FOCAL	1	UBR5
TCGA.AG.A01W.01A	8	103731505	103736899	5	1.3324	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	8	104071688	104156602	54	0.7537	LARGE-GAIN	FOCAL	2	"ATP6V1C1,BAALC"
TCGA.AA.3982	8	104071688	104435536	159	0.7084	LARGE-GAIN	FOCAL	6	"ATP6V1C1,BAALC,CTHRC1,DCAF13,FZD6,SLC25A32"
TCGA.AA.A00D.01A	8	104387917	104454979	20	1.1021	LARGE-GAIN	FOCAL	3	"CTHRC1,DCAF13,SLC25A32"
TCGA.A6.3807	8	105311363	105662326	93	0.6962	LARGE-GAIN	FOCAL	3	"DCSTAMP,DPYS,LRP12"
TCGA.DY.A1DC	8	106340291	106355863	5	1.8427	LARGE-GAIN	FOCAL	1	ZFPM2
TCGA.DY.A1DC	8	106419524	106430675	6	1.7797	LARGE-GAIN	FOCAL	1	ZFPM2
TCGA.DY.A1DC	8	106435222	107470479	305	0.7105	LARGE-GAIN	FOCAL	2	"OXR1,ZFPM2"
TCGA.DY.A1DC	8	107472727	107509203	22	1.1965	LARGE-GAIN	FOCAL	1	OXR1
TCGA.G4.6311	8	108226327	108445219	89	0.7273	LARGE-GAIN	FOCAL	1	ANGPT1
TCGA.A6.2677	8	108667606	108880204	72	0.7242	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6813	8	108866821	108868424	3	1.6111	LARGE-GAIN	FOCAL	0	None
TCGA.CK.4952.01A	8	109070420	110477395	56	1.2343	LARGE-GAIN	FOCAL	8	"EIF3E,EMC2,ENY2,NUDCD1,PKHD1L1,RSPO2,TMEM74,TRHR"
TCGA.DM.A28M.01A	8	109214077	109215612	3	2.1476	LARGE-GAIN	FOCAL	1	EIF3E
TCGA.AG.A01W.01A	8	109551203	110377743	16	0.7779	LARGE-GAIN	FOCAL	5	"ENY2,NUDCD1,PKHD1L1,TMEM74,TRHR"
TCGA.AA.A00N.01A	8	110397751	110487320	47	1.033	LARGE-GAIN	FOCAL	1	PKHD1L1
TCGA.CK.4952.01A	8	110479819	114458070	154	0.7425	LARGE-GAIN	FOCAL	5	"CSMD3,EBAG9,KCNV1,PKHD1L1,SYBU"
TCGA.AA.A00N.01A	8	110576659	110631022	6	0.8522	LARGE-GAIN	FOCAL	2	"EBAG9,SYBU"
TCGA.AA.A010.01A	8	110587118	113240935	12	0.9653	LARGE-GAIN	FOCAL	3	"CSMD3,KCNV1,SYBU"
TCGA.AZ.4684.01A	8	110590049	113649017	56	0.972	LARGE-GAIN	FOCAL	3	"CSMD3,KCNV1,SYBU"
TCGA.AA.A00N.01A	8	110986119	117658668	78	0.9755	LARGE-GAIN	FOCAL	4	"CSMD3,EIF3H,KCNV1,TRPS1"
TCGA.DY.A1DC	8	112170435	112288555	18	1.2669	LARGE-GAIN	FOCAL	0	None
TCGA.D5.5541	8	112201391	115023667	597	1.0563	LARGE-GAIN	FOCAL	1	CSMD3
TCGA.DY.A1DC	8	112291493	113904056	343	0.6983	LARGE-GAIN	FOCAL	1	CSMD3
TCGA.AF.3911	8	112829201	113683161	189	1.256	LARGE-GAIN	FOCAL	1	CSMD3
TCGA.AF.3911	8	113732471	114091731	82	1.7453	LARGE-GAIN	FOCAL	1	CSMD3
TCGA.DY.A1DC	8	113915138	113955729	14	1.6075	LARGE-GAIN	FOCAL	1	CSMD3
TCGA.AF.3911	8	114094183	114120264	9	1.2852	LARGE-GAIN	FOCAL	1	CSMD3
TCGA.CK.4952.01A	8	114518055	116704925	7	1.4629	LARGE-GAIN	FOCAL	1	TRPS1
TCGA.DY.A1DC	8	115738367	115745214	3	2.4626	LARGE-GAIN	FOCAL	0	None
TCGA.AF.3913	8	115891678	116879431	285	0.8253	LARGE-GAIN	FOCAL	1	TRPS1
TCGA.DY.A1DC	8	116254913	116271574	11	1.6055	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.6606	8	116368442	117135528	187	1.2762	LARGE-GAIN	FOCAL	1	TRPS1
TCGA.DY.A1DC	8	116705994	116902340	45	1.1699	LARGE-GAIN	FOCAL	0	None
TCGA.A6.5656	8	117430690	117727849	93	0.8044	LARGE-GAIN	FOCAL	1	EIF3H
TCGA.AA.A010.01A	8	117767858	117859692	5	1.0092	LARGE-GAIN	FOCAL	3	"EIF3H,RAD21,UTP23"
TCGA.AA.A00N.01A	8	118147506	120118037	41	0.6835	LARGE-GAIN	FOCAL	6	"COLEC10,EXT1,MED30,SAMD12,SLC30A8,TNFRSF11B"
TCGA.AA.3982	8	118705184	119151502	195	0.7558	LARGE-GAIN	FOCAL	1	EXT1
TCGA.AG.3906.01A	8	119122303	119122759	2	1.1443	LARGE-GAIN	FOCAL	1	EXT1
TCGA.AA.3967.01A	8	119122303	119209864	3	2.3949	LARGE-GAIN	FOCAL	2	"EXT1,SAMD12"
TCGA.AA.3967.01A	8	119391689	120118037	14	3.3359	LARGE-GAIN	FOCAL	3	"COLEC10,SAMD12,TNFRSF11B"
TCGA.G4.6311	8	119499289	119510461	6	0.8925	LARGE-GAIN	FOCAL	1	SAMD12
TCGA.AA.3982	8	119946609	119947415	5	1.1516	LARGE-GAIN	FOCAL	1	TNFRSF11B
TCGA.AA.3982	8	119947429	119954278	10	0.726	LARGE-GAIN	FOCAL	1	TNFRSF11B
TCGA.AA.3982	8	120118616	120312904	62	0.7213	LARGE-GAIN	FOCAL	2	"COLEC10,MAL2"
TCGA.AA.3967.01A	8	120233779	120977450	71	2.6003	LARGE-GAIN	FOCAL	6	"DEPTOR,DSCC1,ENPP2,MAL2,NOV,TAF2"
TCGA.AA.3982	8	120376553	121274850	293	0.7997	LARGE-GAIN	FOCAL	6	"COL14A1,DEPTOR,DSCC1,ENPP2,NOV,TAF2"
TCGA.AA.3941	8	120452119	121106263	222	0.7199	LARGE-GAIN	FOCAL	4	"DEPTOR,DSCC1,ENPP2,TAF2"
TCGA.AG.A01W.01A	8	120497900	120500521	3	1.1853	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	8	120569714	120844692	52	0.7256	LARGE-GAIN	FOCAL	2	"ENPP2,TAF2"
TCGA.AA.A00D.01A	8	120843843	120940598	12	1.1566	LARGE-GAIN	FOCAL	3	"DEPTOR,DSCC1,TAF2"
TCGA.CK.5914.01A	8	120867802	121180347	14	1.0821	LARGE-GAIN	FOCAL	3	"COL14A1,DEPTOR,DSCC1"
TCGA.AA.A00N.01A	8	120867802	124027655	100	0.9113	LARGE-GAIN	FOCAL	9	"COL14A1,DEPTOR,DERL1,DSCC1,HAS2,MRPL13,MTBP,SNTB1,ZHX2"
TCGA.AG.3909.01A	8	120886036	124031383	100	0.6877	LARGE-GAIN	FOCAL	8	"COL14A1,DEPTOR,DERL1,HAS2,MRPL13,MTBP,SNTB1,ZHX2"
TCGA.NH.A50U	8	120940651	120954779	9	0.8992	LARGE-GAIN	FOCAL	1	DEPTOR
TCGA.CK.5914.01A	8	121279025	121457694	34	1.0958	LARGE-GAIN	FOCAL	3	"COL14A1,MRPL13,MTBP"
TCGA.AZ.4684.01A	8	121279025	121535471	51	2.2088	LARGE-GAIN	FOCAL	3	"COL14A1,MRPL13,MTBP"
TCGA.AA.3982	8	121285069	121720168	111	0.7125	LARGE-GAIN	FOCAL	4	"COL14A1,MRPL13,MTBP,SNTB1"
TCGA.AA.3509.01A	8	121382949	121535471	27	1.0979	LARGE-GAIN	FOCAL	3	"COL14A1,MRPL13,MTBP"
TCGA.AA.3488	8	121982030	122116173	41	1.0309	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01Y	8	122366902	124048169	596	0.808	LARGE-GAIN	FOCAL	3	"DERL1,HAS2,ZHX2"
TCGA.D5.6538	8	122819038	122831722	3	1.9321	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01Y	8	124070431	124163678	39	1.0827	LARGE-GAIN	FOCAL	1	TBC1D31
TCGA.AG.A00C.01A	8	124221615	124249986	5	1.0062	LARGE-GAIN	FOCAL	3	"C8orf76,FAM83A,ZHX1-C8orf76"
TCGA.AG.3909.01A	8	124657940	124749469	14	0.8366	LARGE-GAIN	FOCAL	2	"ANXA13,KLHL38"
TCGA.AA.A00N.01A	8	124657940	124780880	15	0.713	LARGE-GAIN	FOCAL	2	"ANXA13,KLHL38"
TCGA.CK.5914.01A	8	124657940	124780880	15	0.9924	LARGE-GAIN	FOCAL	2	"ANXA13,KLHL38"
TCGA.AG.3909.01A	8	124799886	125033738	25	0.6858	LARGE-GAIN	FOCAL	2	"FAM91A1,FER1L6"
TCGA.CK.5914.01A	8	124822490	125033738	17	0.9334	LARGE-GAIN	FOCAL	2	"FAM91A1,FER1L6"
TCGA.AA.A00N.01A	8	124824752	125052073	19	0.8815	LARGE-GAIN	FOCAL	2	"FAM91A1,FER1L6"
TCGA.AA.3982	8	124827002	124923122	48	0.6887	LARGE-GAIN	FOCAL	2	"FAM91A1,FER1L6"
TCGA.CK.5914.01A	8	125035642	125076539	9	1.4756	LARGE-GAIN	FOCAL	1	FER1L6
TCGA.AG.3909.01A	8	125035642	125078617	10	1.1514	LARGE-GAIN	FOCAL	1	FER1L6
TCGA.AA.A00N.01A	8	125057971	125078617	7	1.8092	LARGE-GAIN	FOCAL	1	FER1L6
TCGA.CK.5914.01A	8	125078617	125487330	26	0.8322	LARGE-GAIN	FOCAL	4	"FER1L6,RNF139,TMEM65,TRMT12"
TCGA.AG.3909.01A	8	125079926	125131798	14	0.7777	LARGE-GAIN	FOCAL	1	FER1L6
TCGA.AA.3941	8	125175447	125745993	207	0.7394	LARGE-GAIN	FOCAL	6	"MTSS1,NDUFB9,RNF139,TATDN1,TMEM65,TRMT12"
TCGA.AA.A010.01A	8	125531024	125603333	18	0.9828	LARGE-GAIN	FOCAL	3	"MTSS1,NDUFB9,TATDN1"
TCGA.AG.3909.01A	8	125565201	125711705	12	0.8958	LARGE-GAIN	FOCAL	1	MTSS1
TCGA.AF.6655	8	125756133	125761164	4	1.7982	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6702	8	125756133	125761164	4	1.4549	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01Y	8	125993772	128153804	806	1.2271	LARGE-GAIN	FOCAL	5	"FAM84B,KIAA0196,NSMCE2,SQLE,TRIB1"
TCGA.AA.3941	8	126178010	126779760	217	0.7568	LARGE-GAIN	FOCAL	2	"NSMCE2,TRIB1"
TCGA.AA.3967.01A	8	126194308	129162300	17	3.7528	LARGE-GAIN	FOCAL	5	"FAM84B,MYC,NSMCE2,POU5F1B,TRIB1"
TCGA.DM.A0XF	8	126524995	128271894	700	0.7167	LARGE-GAIN	FOCAL	1	FAM84B
TCGA.AZ.6598	8	126554038	129970773	1430	1.4464	LARGE-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.AA.3496	8	127075290	129190393	915	0.8214	LARGE-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.G4.6299	8	127187381	132497148	2124	1.1073	LARGE-GAIN	FOCAL	7	"ADCY8,ASAP1,FAM49B,FAM84B,GSDMC,MYC,POU5F1B"
TCGA.D5.5539	8	127399986	127585325	57	1.1856	LARGE-GAIN	FOCAL	1	FAM84B
TCGA.AZ.6603	8	127504652	130303191	1189	0.9111	LARGE-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.AA.A010.01A	8	127568655	128752595	7	1.2196	LARGE-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.AG.A02X.01A	8	127568655	128752595	7	4.6027	LARGE-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.D5.5539	8	127585372	128004833	204	1.5335	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1D6	8	127634849	127708874	45	1.9613	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1D6	8	127712683	127986482	127	1.3229	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	8	127923063	128025052	54	0.7647	LARGE-GAIN	FOCAL	0	None
TCGA.D5.5539	8	128005149	129756265	785	1.1424	LARGE-GAIN	FOCAL	2	"MYC,POU5F1B"
TCGA.DY.A1DC	8	128061785	128067299	5	1.9508	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3902	8	128077520	128171017	27	0.9945	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3872	8	128100075	128274134	58	0.8958	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01Y	8	128161943	128365082	81	1.571	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3902	8	128187992	129454951	611	1.2269	LARGE-GAIN	FOCAL	2	"MYC,POU5F1B"
TCGA.AG.3731	8	128247148	128814764	265	0.7296	LARGE-GAIN	FOCAL	2	"MYC,POU5F1B"
TCGA.DM.A0XF	8	128271962	128898168	267	1.0165	LARGE-GAIN	FOCAL	2	"MYC,POU5F1B"
TCGA.AA.3872	8	128283617	130723791	1022	0.8549	LARGE-GAIN	FOCAL	2	"MYC,POU5F1B"
TCGA.AG.A01Y	8	128365340	129000313	271	1.2732	LARGE-GAIN	FOCAL	2	"MYC,POU5F1B"
TCGA.AA.3488	8	128547941	128590961	20	1.3136	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A0XD	8	128554775	128630215	40	0.8346	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	8	128604413	129128540	252	1.0359	LARGE-GAIN	FOCAL	1	MYC
TCGA.CA.5254	8	128613729	128739770	78	0.8368	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	8	128617611	129135927	251	0.768	LARGE-GAIN	FOCAL	1	MYC
TCGA.CK.5914.01A	8	129061341	130761657	4	1.4995	LARGE-GAIN	FOCAL	1	GSDMC
TCGA.AA.A00N.01A	8	129061341	130854323	15	1.0453	LARGE-GAIN	FOCAL	2	"FAM49B,GSDMC"
TCGA.AZ.4684.01A	8	129061341	132952733	70	1.1161	LARGE-GAIN	FOCAL	5	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC"
TCGA.AA.3982	8	129148523	129174283	20	0.9914	LARGE-GAIN	FOCAL	0	None
TCGA.D5.5541	8	130093097	133542073	1351	0.9696	LARGE-GAIN	FOCAL	8	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC,HHLA1,KCNQ3,OC90"
TCGA.AA.3982	8	130683890	131229179	131	0.9278	LARGE-GAIN	FOCAL	3	"ASAP1,FAM49B,GSDMC"
TCGA.AA.3941	8	130837061	131122643	54	0.9051	LARGE-GAIN	FOCAL	2	"ASAP1,FAM49B"
TCGA.AG.3909.01A	8	131172059	132002587	27	0.8541	LARGE-GAIN	FOCAL	2	"ADCY8,ASAP1"
TCGA.AA.3982	8	131287056	131871970	284	0.8275	LARGE-GAIN	FOCAL	2	"ADCY8,ASAP1"
TCGA.AA.A00N.01A	8	131792623	133650132	91	0.9233	LARGE-GAIN	FOCAL	6	"ADCY8,EFR3A,HHLA1,KCNQ3,LRRC6,OC90"
TCGA.AF.6672	8	131865017	131902910	22	0.9855	LARGE-GAIN	FOCAL	1	ADCY8
TCGA.AZ.4684.01A	8	132956945	133041280	21	2.3811	LARGE-GAIN	FOCAL	2	"EFR3A,OC90"
TCGA.AA.3509.01A	8	132966058	133041280	18	1.1886	LARGE-GAIN	FOCAL	2	"EFR3A,OC90"
TCGA.AA.3982	8	132966521	133120466	65	0.8489	LARGE-GAIN	FOCAL	3	"EFR3A,HHLA1,OC90"
TCGA.AG.3909.01A	8	133036706	133644959	35	0.769	LARGE-GAIN	FOCAL	4	"HHLA1,KCNQ3,LRRC6,OC90"
TCGA.CK.5914.01A	8	133036706	133687647	55	1.0249	LARGE-GAIN	FOCAL	4	"HHLA1,KCNQ3,LRRC6,OC90"
TCGA.AZ.4684.01A	8	133044097	133771004	61	1.703	LARGE-GAIN	FOCAL	5	"HHLA1,KCNQ3,LRRC6,OC90,TMEM71"
TCGA.AA.3982	8	133142309	133782844	281	0.9193	LARGE-GAIN	FOCAL	3	"KCNQ3,LRRC6,TMEM71"
TCGA.D5.5541	8	133549398	133738531	51	1.3528	LARGE-GAIN	FOCAL	2	"LRRC6,TMEM71"
TCGA.AG.A01W.01A	8	133703988	133742847	6	0.7777	LARGE-GAIN	FOCAL	1	TMEM71
TCGA.D5.5541	8	133740898	133900251	51	1.5856	LARGE-GAIN	FOCAL	3	"PHF20L1,TG,TMEM71"
TCGA.AA.3509.01A	8	133790029	133857979	19	1.6589	LARGE-GAIN	FOCAL	1	PHF20L1
TCGA.AZ.4684.01A	8	133790029	133857979	19	3.0179	LARGE-GAIN	FOCAL	1	PHF20L1
TCGA.CK.4948.01B	8	133806635	133856359	17	0.777	LARGE-GAIN	FOCAL	1	PHF20L1
TCGA.CK.5914.01A	8	133806635	134225069	77	0.9793	LARGE-GAIN	FOCAL	4	"PHF20L1,SLA,TG,WISP1"
TCGA.AA.A00N.01A	8	133857979	134225069	60	1.0671	LARGE-GAIN	FOCAL	4	"PHF20L1,SLA,TG,WISP1"
TCGA.AA.3941	8	133876929	134736604	528	0.6966	LARGE-GAIN	FOCAL	5	"NDRG1,SLA,ST3GAL1,TG,WISP1"
TCGA.AA.3982	8	133876929	135108992	689	1.0316	LARGE-GAIN	FOCAL	5	"NDRG1,SLA,ST3GAL1,TG,WISP1"
TCGA.AZ.4684.01A	8	133879179	135600442	91	1.6146	LARGE-GAIN	FOCAL	6	"NDRG1,SLA,ST3GAL1,TG,WISP1,ZFAT"
TCGA.AG.A01W.01A	8	133885996	133906409	7	0.8361	LARGE-GAIN	FOCAL	1	TG
TCGA.D5.5541	8	133900661	135138790	690	1.3357	LARGE-GAIN	FOCAL	5	"NDRG1,SLA,ST3GAL1,TG,WISP1"
TCGA.AA.3872	8	134146419	134154919	3	1.9466	LARGE-GAIN	FOCAL	1	TG
TCGA.AA.A00D.01A	8	134239655	134292421	15	0.9685	LARGE-GAIN	FOCAL	2	"NDRG1,WISP1"
TCGA.AA.A00N.01A	8	134471990	139845244	111	0.8009	LARGE-GAIN	FOCAL	5	"COL22A1,FAM135B,KHDRBS3,ST3GAL1,ZFAT"
TCGA.AA.3982	8	135137584	135416926	131	0.7542	LARGE-GAIN	FOCAL	0	None
TCGA.D5.5541	8	135139520	136620533	611	0.9415	LARGE-GAIN	FOCAL	2	"KHDRBS3,ZFAT"
TCGA.DM.A1D6	8	135337293	135840878	244	2.6377	LARGE-GAIN	FOCAL	1	ZFAT
TCGA.AA.3941	8	135413553	135782980	207	0.7411	LARGE-GAIN	FOCAL	1	ZFAT
TCGA.AA.3982	8	135418476	136006629	272	1.0235	LARGE-GAIN	FOCAL	1	ZFAT
TCGA.D5.6923	8	135479772	135646570	117	0.7965	LARGE-GAIN	FOCAL	1	ZFAT
TCGA.AZ.4684.01A	8	135602458	139642864	54	1.2006	LARGE-GAIN	FOCAL	4	"COL22A1,FAM135B,KHDRBS3,ZFAT"
TCGA.D5.6923	8	135655076	140186203	1959	0.7505	LARGE-GAIN	FOCAL	4	"COL22A1,FAM135B,KHDRBS3,ZFAT"
TCGA.A6.6653	8	135781044	135790334	6	0.8084	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1D6	8	135841963	136116001	112	1.4409	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	8	136569642	141231518	97	0.8567	LARGE-GAIN	FOCAL	5	"COL22A1,FAM135B,KCNK9,KHDRBS3,TRAPPC9"
TCGA.D5.5541	8	136623770	137429057	371	1.3742	LARGE-GAIN	FOCAL	1	KHDRBS3
TCGA.D5.5541	8	137435390	138081595	210	0.997	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2690	8	137689301	137856313	60	1.3402	LARGE-GAIN	FOCAL	0	None
TCGA.D5.5541	8	138084870	142286761	1792	1.3416	LARGE-GAIN	FOCAL	9	"AGO2,CHRAC1,COL22A1,DENND3,FAM135B,KCNK9,PTK2,SLC45A4,TRAPPC9"
TCGA.AA.3982	8	138382229	138455565	36	0.7611	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	8	138473347	138479130	5	0.8628	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	8	138499827	138673559	89	0.7695	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3979	8	138629623	139258819	302	0.7918	LARGE-GAIN	FOCAL	1	FAM135B
TCGA.AA.3982	8	138852319	139422251	310	0.8577	LARGE-GAIN	FOCAL	1	FAM135B
TCGA.AF.6655	8	139069172	139175058	61	1.0631	LARGE-GAIN	FOCAL	1	FAM135B
TCGA.AG.3909.01A	8	139380122	139845244	61	0.7466	LARGE-GAIN	FOCAL	2	"COL22A1,FAM135B"
TCGA.AA.3982	8	139460171	140127841	326	0.9353	LARGE-GAIN	FOCAL	2	"COL22A1,FAM135B"
TCGA.AZ.4684.01A	8	139647180	139767327	29	0.6984	LARGE-GAIN	FOCAL	1	COL22A1
TCGA.AZ.4684.01A	8	139767652	142148074	96	1.2953	LARGE-GAIN	FOCAL	7	"AGO2,CHRAC1,COL22A1,DENND3,KCNK9,PTK2,TRAPPC9"
TCGA.AA.3941	8	140603501	141738586	359	0.8669	LARGE-GAIN	FOCAL	5	"AGO2,CHRAC1,KCNK9,PTK2,TRAPPC9"
TCGA.AA.A00N.01A	8	141674959	142146704	31	0.7915	LARGE-GAIN	FOCAL	2	"DENND3,PTK2"
TCGA.AG.A01N.01A	8	141674959	142170679	38	0.871	LARGE-GAIN	FOCAL	2	"DENND3,PTK2"
TCGA.AA.3939.01A	8	142175238	142178065	3	1.5269	LARGE-GAIN	FOCAL	1	DENND3
TCGA.AG.A016.01A	8	142221513	142228088	5	1.6544	LARGE-GAIN	FOCAL	1	SLC45A4
TCGA.AG.A01L.01A	8	142221513	142228088	5	0.8567	LARGE-GAIN	FOCAL	1	SLC45A4
TCGA.AG.A01Y	8	142251552	142286761	10	1.0204	LARGE-GAIN	FOCAL	1	SLC45A4
TCGA.AG.A01W.01A	8	142291469	142300812	7	1.5262	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	8	142549862	142559142	10	1.1448	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1D9	8	142583790	142595916	7	0.9104	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3872	8	143737278	143924051	48	0.6991	LARGE-GAIN	FOCAL	9	"GML,JRK,LY6D,LY6K,LYNX1,LYPD2,PSCA,SLURP1,THEM6"
TCGA.AA.A00N.01A	8	143956368	143960953	6	1.0981	LARGE-GAIN	FOCAL	1	CYP11B1
TCGA.AA.A010.01A	8	143956368	143998979	13	0.8139	LARGE-GAIN	FOCAL	2	"CYP11B1,CYP11B2"
TCGA.AG.A01W.01A	8	144469218	144591284	20	1.1941	LARGE-GAIN	FOCAL	2	"MAFA,ZC3H3"
TCGA.AM.5820	8	144578747	144693849	23	1.1544	LARGE-GAIN	FOCAL	7	"EEF1D,GSDMD,MROH6,NAPRT,PYCRL,TIGD5,ZC3H3"
TCGA.AG.3906.01A	8	144651560	144668862	6	0.7444	LARGE-GAIN	FOCAL	3	"EEF1D,MROH6,NAPRT"
TCGA.AA.3518	8	144729638	144732449	4	1.3527	LARGE-GAIN	FOCAL	1	ZNF623
TCGA.AG.3906.01A	8	144775810	145000900	31	0.739	LARGE-GAIN	FOCAL	9	"CCDC166,EPPK1,FAM83H,MAPK15,NRBP2,PLEC,PUF60,SCRIB,ZNF707"
TCGA.AA.A02W.01A	8	145150699	145151010	2	7.4797	LARGE-GAIN	FOCAL	1	CYC1
TCGA.AG.3891.01A	8	145512739	145579943	11	1.2738	LARGE-GAIN	FOCAL	6	"BOP1,DGAT1,FBXL6,HSF1,SCRT1,TMEM249"
TCGA.AG.3906.01A	8	145512739	145584242	10	1.1111	LARGE-GAIN	FOCAL	7	"BOP1,DGAT1,FBXL6,HSF1,SCRT1,SLC52A2,TMEM249"
TCGA.AG.3906.01A	8	145689481	145735711	10	0.8671	LARGE-GAIN	FOCAL	6	"CYHR1,FOXH1,GPT,KIFC2,MFSD3,PPP1R16A"
TCGA.AG.A014.01A	8	145745078	145745662	2	4.048	LARGE-GAIN	FOCAL	1	LRRC14
TCGA.A6.5660	8	145764543	146293413	83	0.8203	LARGE-GAIN	FOCAL	10	"ARHGAP39,C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.A00D.01A	8	145780889	145999374	7	1.4035	LARGE-GAIN	FOCAL	3	"ARHGAP39,ZNF251,ZNF34"
TCGA.AA.A00Q.01A	8	145947001	145999374	5	1.021	LARGE-GAIN	FOCAL	2	"ZNF251,ZNF34"
TCGA.AG.A01W.01A	8	145985962	146025621	10	0.8662	LARGE-GAIN	FOCAL	3	"RPL8,ZNF34,ZNF517"
TCGA.AA.A00D.01A	8	146015167	146279416	24	0.8318	LARGE-GAIN	FOCAL	7	"C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF517,ZNF7"
TCGA.AA.A02W.01A	8	146067713	146106852	3	2.5804	LARGE-GAIN	FOCAL	3	"COMMD5,ZNF250,ZNF7"
TCGA.AA.3488	8	146110231	146293413	39	1.009	LARGE-GAIN	FOCAL	3	"C8orf33,ZNF16,ZNF250"
TCGA.CK.4948.01B	8	146156094	146279416	5	0.6966	LARGE-GAIN	FOCAL	2	"C8orf33,ZNF16"
TCGA.CM.5862	8	146203411	146293413	12	0.6848	LARGE-GAIN	FOCAL	1	C8orf33
TCGA.AA.3982	8	146211594	146293413	12	0.6914	LARGE-GAIN	FOCAL	1	C8orf33
TCGA.AG.3906.01A	8	146277799	146279416	3	0.9086	LARGE-GAIN	FOCAL	1	C8orf33
TCGA.AA.3862.01A	9	172055	178769	5	2.2398	LARGE-GAIN	FOCAL	1	CBWD1
TCGA.AA.A00N.01A	9	178769	449742	46	0.8391	LARGE-GAIN	FOCAL	3	"C9orf66,CBWD1,DOCK8"
TCGA.DC.4745	9	192128	273232	44	0.7298	LARGE-GAIN	FOCAL	2	"C9orf66,DOCK8"
TCGA.AG.3594	9	192128	967980	523	1.8624	LARGE-GAIN	FOCAL	4	"C9orf66,DMRT1,DOCK8,KANK1"
TCGA.CK.5914.01A	9	271580	386280	22	0.8558	LARGE-GAIN	FOCAL	1	DOCK8
TCGA.DC.4745	9	274107	274640	3	1.49	LARGE-GAIN	FOCAL	1	DOCK8
TCGA.AA.3869	9	394522	395249	3	1.5953	LARGE-GAIN	FOCAL	1	DOCK8
TCGA.AG.3594	9	978832	1065404	44	1.5687	LARGE-GAIN	FOCAL	2	"DMRT2,DMRT3"
TCGA.AG.3594	9	1069662	1073695	9	1.2045	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3594	9	1077861	1293113	153	0.7381	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	9	2830924	2838370	6	1.27	LARGE-GAIN	FOCAL	1	KIAA0020
TCGA.AZ.4684.01A	9	2830924	2838370	6	1.387	LARGE-GAIN	FOCAL	1	KIAA0020
TCGA.DC.6158	9	2904115	3529410	286	0.7102	LARGE-GAIN	FOCAL	1	RFX3
TCGA.AA.A00N.01A	9	2992418	3936981	30	1.056	LARGE-GAIN	FOCAL	2	"GLIS3,RFX3"
TCGA.CK.5914.01A	9	3014030	4572167	38	0.9057	LARGE-GAIN	FOCAL	3	"GLIS3,RFX3,SLC1A1"
TCGA.AA.3509.01A	9	3228802	3301480	12	0.9491	LARGE-GAIN	FOCAL	1	RFX3
TCGA.AZ.4684.01A	9	3228802	3344768	15	0.892	LARGE-GAIN	FOCAL	1	RFX3
TCGA.DC.6158	9	3550085	3646025	24	0.9972	LARGE-GAIN	FOCAL	0	None
TCGA.A6.2671	9	3704732	3844060	80	0.7427	LARGE-GAIN	FOCAL	1	GLIS3
TCGA.AA.A00N.01A	9	4564303	4585271	9	0.9328	LARGE-GAIN	FOCAL	1	SLC1A1
TCGA.DC.6158	9	4903817	5156060	80	0.7925	LARGE-GAIN	FOCAL	1	JAK2
TCGA.AA.A01C.01A	9	5163992	5361711	12	0.8236	LARGE-GAIN	FOCAL	5	"INSL4,INSL6,PLGRKT,RLN1,RLN2"
TCGA.AA.A01S	9	5928433	5931789	3	1.17855	LARGE-GAIN	FOCAL	1	KIAA2026
TCGA.DC.6158	9	6795051	6878214	33	0.7854	LARGE-GAIN	FOCAL	1	KDM4C
TCGA.AA.A00N.01A	9	6887922	14150102	120	0.9306	LARGE-GAIN	FOCAL	7	"KDM4C,LURAP1L,MPDZ,NFIB,PTPRD,TMEM261,TYRP1"
TCGA.CK.5914.01A	9	7799410	14155772	103	0.9124	LARGE-GAIN	FOCAL	6	"LURAP1L,MPDZ,NFIB,PTPRD,TMEM261,TYRP1"
TCGA.AA.A01C.01A	9	8317819	8341666	7	1.0265	LARGE-GAIN	FOCAL	1	PTPRD
TCGA.AG.3594	9	12174189	13545199	534	1.1197	LARGE-GAIN	FOCAL	3	"LURAP1L,MPDZ,TYRP1"
TCGA.DM.A1HB	9	12248613	12256901	5	1.0322	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	9	12300487	12308792	8	1.2618	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	9	12763449	12818599	23	0.7395	LARGE-GAIN	FOCAL	1	LURAP1L
TCGA.AA.A017.01A	9	13111971	13224334	37	0.7189	LARGE-GAIN	FOCAL	1	MPDZ
TCGA.AA.A01C.01A	9	13147506	13224334	22	1.0226	LARGE-GAIN	FOCAL	1	MPDZ
TCGA.AG.3594	9	13551853	15670444	1039	0.6927	LARGE-GAIN	FOCAL	8	"CCDC171,CER1,FREM1,NFIB,PSIP1,SNAPC3,TTC39B,ZDHHC21"
TCGA.AA.A00N.01A	9	14720069	15203768	51	0.7808	LARGE-GAIN	FOCAL	3	"CER1,FREM1,TTC39B"
TCGA.CK.5914.01A	9	15457907	15489937	15	0.8359	LARGE-GAIN	FOCAL	2	"PSIP1,SNAPC3"
TCGA.AA.A01C.01A	9	15465448	15485938	11	0.7844	LARGE-GAIN	FOCAL	1	PSIP1
TCGA.AF.6655	9	16134925	17635570	740	0.7336	LARGE-GAIN	FOCAL	4	"BNC2,C9orf92,CNTLN,SH3GL2"
TCGA.AZ.4684.01A	9	17166764	17486974	21	1.2061	LARGE-GAIN	FOCAL	1	CNTLN
TCGA.AA.3862.01A	9	17236364	17462909	15	1.9982	LARGE-GAIN	FOCAL	1	CNTLN
TCGA.AA.3861.01A	9	17236364	17466677	18	1.8686	LARGE-GAIN	FOCAL	1	CNTLN
TCGA.AA.A00N.01A	9	17388106	18753255	38	0.999	LARGE-GAIN	FOCAL	3	"ADAMTSL1,CNTLN,SH3GL2"
TCGA.CK.5914.01A	9	17409244	19032799	53	0.7435	LARGE-GAIN	FOCAL	4	"ADAMTSL1,CNTLN,SAXO1,SH3GL2"
TCGA.DM.A28M.01A	9	17457510	17486974	6	1.8198	LARGE-GAIN	FOCAL	1	CNTLN
TCGA.A6.3808.01A	9	17457510	19032799	49	0.7392	LARGE-GAIN	FOCAL	4	"ADAMTSL1,CNTLN,SAXO1,SH3GL2"
TCGA.AF.A56K	9	18224771	18226278	3	1.454	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	9	18817089	18950729	12	0.8054	LARGE-GAIN	FOCAL	2	"ADAMTSL1,SAXO1"
TCGA.AA.A00N.01A	9	18826193	18950729	11	1.4106	LARGE-GAIN	FOCAL	2	"ADAMTSL1,SAXO1"
TCGA.AA.3861.01A	9	19057911	19126080	22	0.9286	LARGE-GAIN	FOCAL	2	"HAUS6,PLIN2"
TCGA.AA.3862.01A	9	19057911	19126080	22	1.1372	LARGE-GAIN	FOCAL	2	"HAUS6,PLIN2"
TCGA.A6.3808.01A	9	19380093	21026557	76	1.1056	LARGE-GAIN	FOCAL	6	"ACER2,FOCAD,HACD4,MLLT3,RPS6,SLC24A2"
TCGA.AA.A00N.01A	9	19516112	20993191	62	0.7535	LARGE-GAIN	FOCAL	3	"FOCAD,MLLT3,SLC24A2"
TCGA.AG.3594	9	20075008	20324369	135	1.0281	LARGE-GAIN	FOCAL	0	None
TCGA.AF.6655	9	21369314	22543730	386	0.8414	LARGE-GAIN	FOCAL	8	"CDKN2A,CDKN2B,DMRTA1,IFNA1,IFNA2,IFNA8,IFNE,MTAP"
TCGA.AG.3594	9	22814842	24880657	679	0.8946	LARGE-GAIN	FOCAL	2	"ELAVL2,IZUMO3"
TCGA.DM.A1D9	9	25418132	25429509	8	0.8018	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1D9	9	26583225	26583488	3	1.3915	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	9	27048114	27056280	3	1.3133	LARGE-GAIN	FOCAL	1	IFT74
TCGA.CK.5914.01A	9	27157792	27220006	20	1.0433	LARGE-GAIN	FOCAL	1	TEK
TCGA.AA.A01C.01A	9	27172562	27229105	19	0.7547	LARGE-GAIN	FOCAL	1	TEK
TCGA.AA.A00N.01A	9	27197323	27220006	10	1.2755	LARGE-GAIN	FOCAL	1	TEK
TCGA.AA.3509.01A	9	27550579	28863564	9	0.9078	LARGE-GAIN	FOCAL	2	"C9orf72,LINGO2"
TCGA.AA.3819	9	28295915	28303494	3	1.1496	LARGE-GAIN	FOCAL	1	LINGO2
TCGA.AG.3891.01A	9	33113414	33120369	4	0.8853	LARGE-GAIN	FOCAL	1	B4GALT1
TCGA.CK.5914.01A	9	33344015	33395024	18	0.9409	LARGE-GAIN	FOCAL	2	"AQP7,NFX1"
TCGA.AA.3861.01A	9	33369844	33798989	59	0.6919	LARGE-GAIN	FOCAL	6	"ANKRD18B,AQP3,AQP7,NFX1,NOL6,PRSS3"
TCGA.AA.3862.01A	9	33386053	33750465	50	0.8631	LARGE-GAIN	FOCAL	5	"ANKRD18B,AQP3,AQP7,NOL6,PRSS3"
TCGA.AG.A01W.01A	9	33452612	33807740	22	0.8444	LARGE-GAIN	FOCAL	3	"ANKRD18B,NOL6,PRSS3"
TCGA.CK.5914.01A	9	33541088	33617738	13	1.4817	LARGE-GAIN	FOCAL	1	ANKRD18B
TCGA.AA.A010.01A	9	33916984	33956024	17	0.9931	LARGE-GAIN	FOCAL	2	"UBAP2,UBE2R2"
TCGA.AA.A00N.01A	9	33922462	33933449	9	1.6588	LARGE-GAIN	FOCAL	1	UBAP2
TCGA.AG.A01W.01A	9	33933232	33943267	6	1.0296	LARGE-GAIN	FOCAL	1	UBAP2
TCGA.AG.3611.01A	9	33973122	34096670	10	0.7554	LARGE-GAIN	FOCAL	2	"DCAF12,UBAP2"
TCGA.AY.5543	9	34728938	34729804	4	1.1647	LARGE-GAIN	FOCAL	1	FAM205A
TCGA.AA.A00N.01A	9	35162190	35563695	51	0.863	LARGE-GAIN	FOCAL	3	"FAM166B,RUSC2,UNC13B"
TCGA.AG.3909.01A	9	35370257	35376010	3	1.0495	LARGE-GAIN	FOCAL	1	UNC13B
TCGA.AA.A010.01A	9	35400246	35563695	18	0.865	LARGE-GAIN	FOCAL	3	"FAM166B,RUSC2,UNC13B"
TCGA.AG.3906.01A	9	35605585	35612798	10	1.6974	LARGE-GAIN	FOCAL	2	"CD72,TESK1"
TCGA.AG.3891.01A	9	35607947	35612798	6	0.8638	LARGE-GAIN	FOCAL	2	"CD72,TESK1"
TCGA.AG.3906.01A	9	35721598	35741621	20	0.8332	LARGE-GAIN	FOCAL	3	"CREB3,GBA2,TLN1"
TCGA.AG.A01W.01A	9	35734561	35783847	25	0.8775	LARGE-GAIN	FOCAL	4	"CREB3,GBA2,MSMP,RGP1"
TCGA.AG.3906.01A	9	35792366	35802453	11	0.8101	LARGE-GAIN	FOCAL	1	NPR2
TCGA.AA.A010.01A	9	35834957	36036948	14	0.68	LARGE-GAIN	FOCAL	5	"HRCT1,OR13J1,OR2S2,RECK,TMEM8B"
TCGA.CK.5914.01A	9	35853535	36091120	13	0.7581	LARGE-GAIN	FOCAL	5	"HRCT1,OR13J1,OR2S2,RECK,TMEM8B"
TCGA.AA.A010.01A	9	36677108	36923319	5	0.9006	LARGE-GAIN	FOCAL	2	"MELK,PAX5"
TCGA.AD.A5EK	9	37222680	37438525	56	0.8303	LARGE-GAIN	FOCAL	3	"GRHPR,ZBTB5,ZCCHC7"
TCGA.AG.3909.01A	9	37948583	38015956	4	0.6875	LARGE-GAIN	FOCAL	1	SHB
TCGA.AA.A00N.01A	9	71079960	71155402	8	1.4258	LARGE-GAIN	FOCAL	2	"PGM5,TMEM252"
TCGA.DM.A28A	9	71513961	71712223	109	0.9424	LARGE-GAIN	FOCAL	3	"FXN,PIP5K1B,PRKACG"
TCGA.AG.3906.01A	9	71623273	71661254	4	1.0873	LARGE-GAIN	FOCAL	3	"FXN,PIP5K1B,PRKACG"
TCGA.AA.3850	9	71753269	71795512	12	1.01145	LARGE-GAIN	FOCAL	1	TJP2
TCGA.AZ.4684.01A	9	74865602	77275496	52	0.7078	LARGE-GAIN	FOCAL	6	"ALDH1A1,ANXA1,GDA,RORB,TMC1,ZFAND5"
TCGA.DM.A28A	9	74883324	75044590	68	0.9378	LARGE-GAIN	FOCAL	1	ZFAND5
TCGA.AG.3906.01A	9	75420248	75450846	6	0.9127	LARGE-GAIN	FOCAL	1	TMC1
TCGA.CK.5914.01A	9	75516063	75533586	6	1.0066	LARGE-GAIN	FOCAL	1	ALDH1A1
TCGA.AA.A00N.01A	9	75516063	77448872	65	0.81	LARGE-GAIN	FOCAL	4	"ALDH1A1,ANXA1,RORB,TRPM6"
TCGA.CK.5914.01A	9	78748983	78968897	30	1.0783	LARGE-GAIN	FOCAL	1	PCSK5
TCGA.AA.A00N.01A	9	78771909	78973387	30	1.2041	LARGE-GAIN	FOCAL	1	PCSK5
TCGA.AG.3909.01A	9	78771909	78973387	29	0.7839	LARGE-GAIN	FOCAL	1	PCSK5
TCGA.CK.5914.01A	9	79229401	79468993	25	0.8037	LARGE-GAIN	FOCAL	1	PRUNE2
TCGA.AA.3695	9	79711618	79731046	7	0.7844	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	9	79820205	79852901	15	0.9902	LARGE-GAIN	FOCAL	1	VPS13A
TCGA.AA.A00N.01A	9	79852901	80537070	64	0.806	LARGE-GAIN	FOCAL	3	"GNA14,GNAQ,VPS13A"
TCGA.CK.5914.01A	9	79891023	79959047	24	0.7212	LARGE-GAIN	FOCAL	1	VPS13A
TCGA.AZ.4684.01A	9	79928891	79955066	13	1.2716	LARGE-GAIN	FOCAL	1	VPS13A
TCGA.AA.3967.01A	9	80916808	80943849	7	0.9272	LARGE-GAIN	FOCAL	1	PSAT1
TCGA.AA.A00N.01A	9	82242237	82337816	16	1.1007	LARGE-GAIN	FOCAL	1	TLE4
TCGA.AA.3862.01A	9	86523330	86588752	15	1.4864	LARGE-GAIN	FOCAL	3	"C9orf64,HNRNPK,KIF27"
TCGA.AA.3861.01A	9	86530159	86588752	14	1.3501	LARGE-GAIN	FOCAL	3	"C9orf64,HNRNPK,KIF27"
TCGA.AG.3906.01A	9	86554394	86571117	4	0.9811	LARGE-GAIN	FOCAL	1	C9orf64
TCGA.AG.3902	9	86834774	86836589	3	1.5844	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	9	87563339	87636116	4	2.1811	LARGE-GAIN	FOCAL	1	NTRK2
TCGA.DM.A28A	9	88118036	89306304	308	0.9711	LARGE-GAIN	FOCAL	6	"AGTPBP1,C9orf153,GOLM1,ISCA1,NAA35,ZCCHC6"
TCGA.AA.A00N.01A	9	88203215	88327342	18	0.76	LARGE-GAIN	FOCAL	1	AGTPBP1
TCGA.AZ.4684.01A	9	88589824	88593135	4	1.7008	LARGE-GAIN	FOCAL	1	NAA35
TCGA.AA.3509.01A	9	88591524	88593135	3	1.9074	LARGE-GAIN	FOCAL	1	NAA35
TCGA.AA.3861.01A	9	90499806	90582339	10	1.5863	LARGE-GAIN	FOCAL	3	"CDK20,SPATA31C1,SPATA31E1"
TCGA.AA.3862.01A	9	90499806	90582339	10	1.7082	LARGE-GAIN	FOCAL	3	"CDK20,SPATA31C1,SPATA31E1"
TCGA.AA.A00Q.01A	9	91083275	91089976	2	1.3933	LARGE-GAIN	FOCAL	1	SPIN1
TCGA.AA.3509.01A	9	91930054	91931214	2	1.9781	LARGE-GAIN	FOCAL	1	CKS2
TCGA.AZ.4684.01A	9	91930054	91931214	2	2.1659	LARGE-GAIN	FOCAL	1	CKS2
TCGA.CK.5914.01A	9	91953326	91991700	14	1.2087	LARGE-GAIN	FOCAL	2	"SECISBP2,SEMA4D"
TCGA.AA.A010.01A	9	91964644	92219972	22	1.0089	LARGE-GAIN	FOCAL	3	"GADD45G,SECISBP2,SEMA4D"
TCGA.DM.A28A	9	92054548	92457326	164	0.8779	LARGE-GAIN	FOCAL	2	"GADD45G,SEMA4D"
TCGA.AA.A010.01A	9	92220325	93626843	6	1.7113	LARGE-GAIN	FOCAL	3	"DIRAS2,GADD45G,SYK"
TCGA.CM.4746	9	92342789	95078851	1004	1.4523	LARGE-GAIN	FOCAL	8	"AUH,DIRAS2,IARS,NFIL3,NOL8,ROR2,SPTLC1,SYK"
TCGA.AA.A010.01A	9	93627268	94087545	16	0.7708	LARGE-GAIN	FOCAL	2	"AUH,SYK"
TCGA.AA.A010.01A	9	94456599	94797030	14	0.9147	LARGE-GAIN	FOCAL	2	"ROR2,SPTLC1"
TCGA.A6.3808.01A	9	95060042	95373535	48	0.9361	LARGE-GAIN	FOCAL	6	"ASPN,CENPP,ECM2,NOL8,OGN,OMD"
TCGA.AA.A010.01A	9	95073387	95166781	19	1.0765	LARGE-GAIN	FOCAL	3	"CENPP,NOL8,OGN"
TCGA.AA.A010.01A	9	95236856	95432144	27	1.1188	LARGE-GAIN	FOCAL	4	"ASPN,CENPP,ECM2,IPPK"
TCGA.AG.3906.01A	9	95480032	95484891	4	1.0214	LARGE-GAIN	FOCAL	1	BICD2
TCGA.CK.5914.01A	9	95618038	95777978	11	0.8733	LARGE-GAIN	FOCAL	2	"FGD3,ZNF484"
TCGA.AA.A010.01A	9	95618038	95841723	22	0.7415	LARGE-GAIN	FOCAL	3	"FGD3,SUSD3,ZNF484"
TCGA.AA.A00N.01A	9	95738519	95777978	8	1.3487	LARGE-GAIN	FOCAL	1	FGD3
TCGA.AA.A010.01A	9	95991931	96097638	30	0.8683	LARGE-GAIN	FOCAL	2	"C9orf129,WNK2"
TCGA.AA.A02K.01A	9	96025808	96079756	11	0.9193	LARGE-GAIN	FOCAL	1	WNK2
TCGA.AA.A010.01A	9	96259701	96305534	7	0.8613	LARGE-GAIN	FOCAL	1	FAM120A
TCGA.AA.A010.01A	9	98638226	98678472	7	1.0374	LARGE-GAIN	FOCAL	1	ERCC6L2
TCGA.CK.5914.01A	9	98677941	98740305	15	1.0522	LARGE-GAIN	FOCAL	1	ERCC6L2
TCGA.AA.3509.01A	9	98684535	98735068	11	0.9236	LARGE-GAIN	FOCAL	1	ERCC6L2
TCGA.AZ.4684.01A	9	98684535	98740305	12	0.9536	LARGE-GAIN	FOCAL	1	ERCC6L2
TCGA.A6.3808.01A	9	98685494	98728842	7	2.3222	LARGE-GAIN	FOCAL	1	ERCC6L2
TCGA.AA.A010.01A	9	98997695	99122383	20	0.8559	LARGE-GAIN	FOCAL	2	"HSD17B3,SLC35D2"
TCGA.AG.3906.01A	9	99126691	99160446	6	0.7071	LARGE-GAIN	FOCAL	2	"SLC35D2,ZNF367"
TCGA.AA.A010.01A	9	99246702	99314029	14	0.7863	LARGE-GAIN	FOCAL	2	"CDC14B,HABP4"
TCGA.AA.A010.01A	9	99324925	99328985	4	1.9866	LARGE-GAIN	FOCAL	1	CDC14B
TCGA.AG.3906.01A	9	99380740	99413891	5	1.0031	LARGE-GAIN	FOCAL	2	"AAED1,CDC14B"
TCGA.AA.A010.01A	9	99521013	99691217	11	0.6959	LARGE-GAIN	FOCAL	2	"ZNF510,ZNF782"
TCGA.AA.A010.01A	9	99694057	99735091	8	1.3699	LARGE-GAIN	FOCAL	1	NUTM2G
TCGA.AA.A010.01A	9	100069955	100138998	32	1.1415	LARGE-GAIN	FOCAL	1	CCDC180
TCGA.AA.A01K.01A	9	100080698	100082348	2	5.8528	LARGE-GAIN	FOCAL	1	CCDC180
TCGA.CK.5914.01A	9	100190711	100243073	13	0.7249	LARGE-GAIN	FOCAL	1	TDRD7
TCGA.AA.3509.01A	9	100387963	100407352	6	1.2267	LARGE-GAIN	FOCAL	2	"NCBP1,TSTD2"
TCGA.AZ.4684.01A	9	100387963	100412737	10	0.9069	LARGE-GAIN	FOCAL	2	"NCBP1,TSTD2"
TCGA.AA.A010.01A	9	100387963	100424282	18	0.9075	LARGE-GAIN	FOCAL	2	"NCBP1,TSTD2"
TCGA.AA.A010.01A	9	100666967	100700282	10	1.0456	LARGE-GAIN	FOCAL	2	"C9orf156,HEMGN"
TCGA.AG.3906.01A	9	100839173	100887007	10	0.7351	LARGE-GAIN	FOCAL	3	"CORO2A,NANS,TRIM14"
TCGA.AA.A010.01A	9	100881214	100919692	12	0.9769	LARGE-GAIN	FOCAL	2	"CORO2A,TRIM14"
TCGA.AA.A010.01A	9	100983065	101340195	24	1.1329	LARGE-GAIN	FOCAL	2	"GABBR2,TBC1D2"
TCGA.AA.A010.01A	9	101706271	101818493	29	1.0778	LARGE-GAIN	FOCAL	1	COL15A1
TCGA.AG.3909.01A	9	101767131	101831907	28	0.747	LARGE-GAIN	FOCAL	1	COL15A1
TCGA.CK.5914.01A	9	101767131	101911450	36	0.8198	LARGE-GAIN	FOCAL	2	"COL15A1,TGFBR1"
TCGA.AA.A010.01A	9	101980194	102068531	7	1.3355	LARGE-GAIN	FOCAL	2	"ALG2,SEC61B"
TCGA.AG.3906.01A	9	102588967	102595542	4	1.2161	LARGE-GAIN	FOCAL	1	NR4A3
TCGA.AA.A00N.01A	9	102988305	103070733	17	0.9531	LARGE-GAIN	FOCAL	2	"INVS,TEX10"
TCGA.AA.A00N.01A	9	103947707	104314675	36	1.0205	LARGE-GAIN	FOCAL	7	"ALDOB,BAAT,LPPR1,MRPL50,RNF20,TMEM246,ZNF189"
TCGA.AA.A00N.01A	9	105419500	105766929	5	1.2662	LARGE-GAIN	FOCAL	1	CYLC2
TCGA.CK.5914.01A	9	107546569	107607703	41	0.7077	LARGE-GAIN	FOCAL	1	ABCA1
TCGA.AA.A00N.01A	9	107568472	107593159	17	0.9886	LARGE-GAIN	FOCAL	1	ABCA1
TCGA.AA.A00N.01A	9	107665831	108152089	17	0.7073	LARGE-GAIN	FOCAL	2	"ABCA1,SLC44A1"
TCGA.AA.A010.01A	9	108118474	108136832	8	1.0925	LARGE-GAIN	FOCAL	1	SLC44A1
TCGA.AA.A00N.01A	9	109685635	109771788	12	1.3244	LARGE-GAIN	FOCAL	1	ZNF462
TCGA.CK.5914.01A	9	109701158	109773084	7	1.2328	LARGE-GAIN	FOCAL	1	ZNF462
TCGA.AG.3909.01A	9	109734274	109773084	6	0.7477	LARGE-GAIN	FOCAL	1	ZNF462
TCGA.AA.3850	9	109985219	109986600	3	1.61585	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3850	9	110042483	110080197	12	0.69625	LARGE-GAIN	FOCAL	1	RAD23B
TCGA.CK.5914.01A	9	111947722	111979245	8	1.234	LARGE-GAIN	FOCAL	1	EPB41L4B
TCGA.AA.A00N.01A	9	113086100	114206611	117	0.8108	LARGE-GAIN	FOCAL	6	"KIAA0368,LPAR1,MUSK,OR2K2,SVEP1,TXNDC8"
TCGA.CK.5914.01A	9	114124268	114137341	11	1.203	LARGE-GAIN	FOCAL	1	KIAA0368
TCGA.CK.5914.01A	9	114138690	114213667	34	0.6949	LARGE-GAIN	FOCAL	1	KIAA0368
TCGA.AG.3906.01A	9	114409336	114415328	3	1.6562	LARGE-GAIN	FOCAL	2	"DNAJC25,DNAJC25-GNG10"
TCGA.CK.5914.01A	9	114456052	114503705	16	0.803	LARGE-GAIN	FOCAL	1	C9orf84
TCGA.NH.A8F8	9	114637493	115091258	156	0.8714	LARGE-GAIN	FOCAL	3	"PTBP3,SUSD1,UGCG"
TCGA.CK.5914.01A	9	114803671	114997051	24	0.8974	LARGE-GAIN	FOCAL	2	"PTBP3,SUSD1"
TCGA.AG.3906.01A	9	116093212	116130498	6	0.7196	LARGE-GAIN	FOCAL	2	"BSPRY,WDR31"
TCGA.AA.A010.01A	9	116135849	116175744	12	0.6813	LARGE-GAIN	FOCAL	4	"ALAD,C9orf43,HDHD3,POLE3"
TCGA.AA.A010.01A	9	116226026	116861188	59	0.7274	LARGE-GAIN	FOCAL	4	"AMBP,KIF12,RGS3,ZNF618"
TCGA.AA.A010.01A	9	116958174	117350058	92	0.8467	LARGE-GAIN	FOCAL	6	"AKNA,ATP6V1G1,COL27A1,DFNB31,ORM1,ORM2"
TCGA.AA.A00N.01A	9	116984438	117085385	41	0.8912	LARGE-GAIN	FOCAL	2	"COL27A1,ORM1"
TCGA.AG.A014.01A	9	117105934	117108104	2	3.4449	LARGE-GAIN	FOCAL	1	AKNA
TCGA.AG.3906.01A	9	117379425	117396000	4	1.1945	LARGE-GAIN	FOCAL	1	C9orf91
TCGA.AG.3906.01A	9	123232352	123253538	5	0.7099	LARGE-GAIN	FOCAL	1	CDK5RAP2
TCGA.AG.3906.01A	9	123620225	123671456	14	0.7944	LARGE-GAIN	FOCAL	2	"PHF19,TRAF1"
TCGA.AG.3891.01A	9	123632672	123671456	5	0.7792	LARGE-GAIN	FOCAL	2	"PHF19,TRAF1"
TCGA.AA.A010.01A	9	123737008	123769120	12	0.8674	LARGE-GAIN	FOCAL	1	C5
TCGA.AA.3861.01A	9	123877318	123937248	30	0.868	LARGE-GAIN	FOCAL	1	CNTRL
TCGA.AA.3862.01A	9	123877318	123937248	30	0.9577	LARGE-GAIN	FOCAL	1	CNTRL
TCGA.AA.A00N.01A	9	123877318	123939351	31	0.8032	LARGE-GAIN	FOCAL	1	CNTRL
TCGA.CK.5914.01A	9	123898033	123945546	30	0.7566	LARGE-GAIN	FOCAL	2	"CNTRL,RAB14"
TCGA.AA.A02K.01A	9	125585264	125719289	23	0.8106	LARGE-GAIN	FOCAL	5	"PDCL,RABGAP1,RC3H2,ZBTB26,ZBTB6"
TCGA.AG.3906.01A	9	125588845	125639703	13	0.7646	LARGE-GAIN	FOCAL	2	"PDCL,RC3H2"
TCGA.AA.A00N.01A	9	125719302	125796880	13	0.7392	LARGE-GAIN	FOCAL	2	"GPR21,RABGAP1"
TCGA.AA.A00N.01A	9	126202644	126641164	18	0.7318	LARGE-GAIN	FOCAL	1	DENND1A
TCGA.CK.5914.01A	9	126220020	126392605	5	1.3919	LARGE-GAIN	FOCAL	1	DENND1A
TCGA.AG.A01W.01A	9	126253171	126256923	5	1.079	LARGE-GAIN	FOCAL	1	DENND1A
TCGA.EI.6883	9	127069708	127118385	13	1.2601	LARGE-GAIN	FOCAL	2	"NEK6,PSMB7"
TCGA.AA.A02K.01A	9	127220351	127230761	6	0.8958	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	9	127262352	127455935	11	0.6964	LARGE-GAIN	FOCAL	2	"NR5A1,NR6A1"
TCGA.CK.5914.01A	9	127284939	127455935	10	1.2195	LARGE-GAIN	FOCAL	1	NR6A1
TCGA.AA.A00N.01A	9	127298105	127572040	16	0.7963	LARGE-GAIN	FOCAL	2	"NR6A1,OLFML2A"
TCGA.CK.5914.01A	9	127644732	127662685	7	0.9662	LARGE-GAIN	FOCAL	1	GOLGA1
TCGA.A6.3808.01A	9	127644732	127674142	9	1.757	LARGE-GAIN	FOCAL	1	GOLGA1
TCGA.AA.3509.01A	9	127690437	127693541	3	1.075	LARGE-GAIN	FOCAL	1	GOLGA1
TCGA.CK.5914.01A	9	129724497	129957323	18	1.0699	LARGE-GAIN	FOCAL	2	"ANGPTL2,RALGPS1"
TCGA.A6.3808.01A	9	129724497	130101896	41	0.7441	LARGE-GAIN	FOCAL	3	"ANGPTL2,GARNL3,RALGPS1"
TCGA.CK.5914.01A	9	130027125	130149422	25	0.7202	LARGE-GAIN	FOCAL	1	GARNL3
TCGA.A6.3808.01A	9	130279099	130446599	26	1.0646	LARGE-GAIN	FOCAL	2	"FAM129B,STXBP1"
TCGA.CK.5914.01A	9	130374601	130469262	21	0.9441	LARGE-GAIN	FOCAL	1	STXBP1
TCGA.AG.3909.01A	9	130413860	130444676	17	0.7945	LARGE-GAIN	FOCAL	1	STXBP1
TCGA.AA.A010.01A	9	130423354	130444676	13	0.8323	LARGE-GAIN	FOCAL	1	STXBP1
TCGA.AG.3906.01A	9	130506816	130551450	10	1.2059	LARGE-GAIN	FOCAL	2	"CDK9,SH2D3C"
TCGA.AG.3891.01A	9	130509376	130549744	7	0.8654	LARGE-GAIN	FOCAL	2	"CDK9,SH2D3C"
TCGA.AG.3906.01A	9	130652866	130687334	8	0.7711	LARGE-GAIN	FOCAL	3	"PIP5KL1,ST6GALNAC4,ST6GALNAC6"
TCGA.AG.A032.01A	9	131010110	131010814	2	4.1384	LARGE-GAIN	FOCAL	1	DNM1
TCGA.AG.3906.01A	9	131088017	131196677	26	0.7855	LARGE-GAIN	FOCAL	4	"CERCAM,COQ4,SLC27A4,URM1"
TCGA.CK.5914.01A	9	131336925	131380254	35	0.9538	LARGE-GAIN	FOCAL	1	SPTAN1
TCGA.AG.3909.01A	9	131339105	131381100	34	0.7601	LARGE-GAIN	FOCAL	1	SPTAN1
TCGA.AG.3906.01A	9	131453389	131456835	6	1.3071	LARGE-GAIN	FOCAL	1	SET
TCGA.AG.A00C.01A	9	131453389	131456835	6	0.9531	LARGE-GAIN	FOCAL	1	SET
TCGA.AA.A010.01A	9	131678335	131709325	11	0.6894	LARGE-GAIN	FOCAL	3	"DOLK,LRRC8A,PHYHD1"
TCGA.AA.A01D.01A	9	131760372	131761429	3	5.6805	LARGE-GAIN	FOCAL	1	NUP188
TCGA.AG.A02X.01A	9	131760763	131761429	2	4.2636	LARGE-GAIN	FOCAL	1	NUP188
TCGA.AA.A00N.01A	9	133924360	133957405	16	0.6915	LARGE-GAIN	FOCAL	1	LAMC3
TCGA.CK.5914.01A	9	134014656	134108756	28	0.7639	LARGE-GAIN	FOCAL	1	NUP214
TCGA.AA.A01Q.01A	9	134072551	134073921	3	1.3417	LARGE-GAIN	FOCAL	1	NUP214
TCGA.AA.A00Q.01A	9	134307954	134363205	5	0.7146	LARGE-GAIN	FOCAL	1	PRRC2B
TCGA.AA.A00N.01A	9	134477391	134584942	15	0.963	LARGE-GAIN	FOCAL	1	RAPGEF1
TCGA.AA.A00N.01A	9	135862014	135866212	6	1.2736	LARGE-GAIN	FOCAL	1	GFI1B
TCGA.A6.3808.01A	9	136081220	136213348	28	0.8588	LARGE-GAIN	FOCAL	4	"ABO,MED22,OBP2B,SURF6"
TCGA.AG.3883	9	136619339	136633605	7	0.8359	LARGE-GAIN	FOCAL	1	VAV2
TCGA.AG.3906.01A	9	136917381	137013340	9	0.8094	LARGE-GAIN	FOCAL	2	"BRD3,WDR5"
TCGA.AM.5820	9	137205221	137352271	25	1.1778	LARGE-GAIN	FOCAL	1	RXRA
TCGA.AA.A00N.01A	9	137772616	137809567	17	0.6819	LARGE-GAIN	FOCAL	2	"FCN1,FCN2"
TCGA.AG.3891.01A	9	138377655	138378310	2	1.3377	LARGE-GAIN	FOCAL	1	PPP1R26
TCGA.AG.4015	9	138398738	138402651	3	0.9727	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5820	9	138550825	138686570	29	0.788	LARGE-GAIN	FOCAL	3	"KCNT1,LCN9,SOHLH1"
TCGA.AA.3864	9	138929783	138947798	4	1.8128	LARGE-GAIN	FOCAL	1	NACC2
TCGA.AA.3872	9	139270875	139288375	5	1.8883	LARGE-GAIN	FOCAL	1	SNAPC4
TCGA.AG.3906.01A	9	139298467	139342237	19	0.9704	LARGE-GAIN	FOCAL	4	"INPP5E,PMPCA,SDCCAG3,SEC16A"
TCGA.AG.3891.01A	9	139299018	139310704	11	0.8811	LARGE-GAIN	FOCAL	2	"PMPCA,SDCCAG3"
TCGA.AG.A00C.01A	9	139302236	139366378	33	0.8135	LARGE-GAIN	FOCAL	4	"INPP5E,PMPCA,SDCCAG3,SEC16A"
TCGA.AM.5820	9	139395472	139617378	27	1.3085	LARGE-GAIN	FOCAL	4	"AGPAT2,EGFL7,FAM69B,NOTCH1"
TCGA.AG.A01W.01A	9	139443119	139474628	16	0.9467	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3844	9	139529666	139660401	14	1.2367	LARGE-GAIN	FOCAL	7	"AGPAT2,EGFL7,FAM69B,LCN10,LCN15,LCN6,LCN8"
TCGA.AG.3906.01A	9	139698937	139793989	10	0.8823	LARGE-GAIN	FOCAL	7	"C9orf172,CCDC183,EDF1,MAMDC4,PHPT1,RABL6,TRAF2"
TCGA.AG.A015.01A	9	140001675	140036418	7	0.7547	LARGE-GAIN	FOCAL	3	"DPP7,GRIN1,MAN1B1"
TCGA.AG.3906.01A	9	140100626	140145690	10	1.2836	LARGE-GAIN	FOCAL	7	"CYSRT1,FAM166A,NDOR1,RNF208,RNF224,SLC34A3,TUBB4B"
TCGA.AA.3872	9	140447804	141071474	119	0.6974	LARGE-GAIN	FOCAL	5	"ARRDC1,CACNA1B,DPH7,EHMT1,ZMYND19"
TCGA.AG.3891.01A	9	140470477	140508392	9	0.7189	LARGE-GAIN	FOCAL	3	"ARRDC1,DPH7,ZMYND19"
TCGA.AA.A00N.01A	9	140967887	140972518	4	1.0074	LARGE-GAIN	FOCAL	1	CACNA1B
TCGA.AA.3861.01A	9	141012356	141109683	6	0.7409	LARGE-GAIN	FOCAL	2	"CACNA1B,FAM157B"
TCGA.AA.3862.01A	9	141012356	141109683	7	1.0889	LARGE-GAIN	FOCAL	2	"CACNA1B,FAM157B"
TCGA.D5.5541	9	141054760	141071474	2	0.8776	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	10	83181	85054	4	0.9421	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A02K.01A	10	93181	334243	23	0.7215	LARGE-GAIN	FOCAL	3	"DIP2C,TUBB8,ZMYND11"
TCGA.AA.A00J.01A	10	94648	285322	7	0.8612	LARGE-GAIN	FOCAL	2	"TUBB8,ZMYND11"
TCGA.AA.A00N.01A	10	225905	327102	17	0.769	LARGE-GAIN	FOCAL	2	"DIP2C,ZMYND11"
TCGA.AA.A02K.01A	10	355941	858826	29	1.1517	LARGE-GAIN	FOCAL	2	"DIP2C,LARP4B"
TCGA.AG.A01W.01A	10	454959	476763	3	0.7418	LARGE-GAIN	FOCAL	1	DIP2C
TCGA.D5.6537	10	756995	761024	6	1.2698	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	10	909635	1034345	5	1.0259	LARGE-GAIN	FOCAL	1	LARP4B
TCGA.AA.3952	10	1969372	2901319	557	0.8254	LARGE-GAIN	FOCAL	0	None
TCGA.AF.3914.01A	10	3145922	3182829	23	1.1733	LARGE-GAIN	FOCAL	2	"PFKP,PITRM1"
TCGA.AG.A032.01A	10	3199080	3200184	3	2.0773	LARGE-GAIN	FOCAL	1	PITRM1
TCGA.AG.4015	10	3684252	3742043	39	0.7541	LARGE-GAIN	FOCAL	0	None
TCGA.D5.5539	10	3965721	3966868	4	1.1374	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A020	10	4652525	4652848	4	1.021	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3930.01A	10	4889280	5005941	4	0.8942	LARGE-GAIN	FOCAL	2	"AKR1C1,AKR1E2"
TCGA.AA.3861.01A	10	5014353	5037911	5	2.2469	LARGE-GAIN	FOCAL	2	"AKR1C1,AKR1C2"
TCGA.AA.3862.01A	10	5014353	5041329	8	2.2701	LARGE-GAIN	FOCAL	2	"AKR1C1,AKR1C2"
TCGA.AA.A00N.01A	10	5136581	5437257	30	1.1704	LARGE-GAIN	FOCAL	4	"AKR1C3,AKR1C4,TUBAL3,UCN3"
TCGA.A6.A567	10	5207408	5403480	105	0.7295	LARGE-GAIN	FOCAL	1	AKR1C4
TCGA.G4.6317	10	5624037	5633370	4	1.0363	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	10	5920045	5929778	6	0.8941	LARGE-GAIN	FOCAL	1	ANKRD16
TCGA.AA.A00N.01A	10	6470119	6556942	17	0.7322	LARGE-GAIN	FOCAL	1	PRKCQ
TCGA.AG.3906.01A	10	11789311	11908530	6	0.9057	LARGE-GAIN	FOCAL	2	"ECHDC3,PROSER2"
TCGA.AG.A032.01A	10	12209651	12215664	6	0.7131	LARGE-GAIN	FOCAL	2	"NUDT5,SEC61A2"
TCGA.AA.3556	10	13064222	13079951	5	1.3068	LARGE-GAIN	FOCAL	1	CCDC3
TCGA.AG.3906.01A	10	13371652	13386709	5	1.0343	LARGE-GAIN	FOCAL	1	SEPHS1
TCGA.AG.3906.01A	10	13693848	13716870	8	0.989	LARGE-GAIN	FOCAL	1	FRMD4A
TCGA.DM.A28M.01A	10	15875568	15885143	5	1.4821	LARGE-GAIN	FOCAL	1	FAM188A
TCGA.AG.3583	10	16358823	16383770	8	1.2077	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01K.01A	10	17275535	17279213	6	2.7534	LARGE-GAIN	FOCAL	1	VIM
TCGA.AA.3939.01A	10	17813247	18087551	9	0.8005	LARGE-GAIN	FOCAL	2	"MRC1,TMEM236"
TCGA.AA.3862.01A	10	17865072	18284577	28	1.0268	LARGE-GAIN	FOCAL	3	"MRC1,SLC39A12,TMEM236"
TCGA.AG.3583	10	18370323	18396165	15	0.765	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	10	18874856	21784479	80	1.0048	LARGE-GAIN	FOCAL	7	"ARL5B,C10orf113,CASC10,MALRD1,NEBL,NSUN6,PLXDC2"
TCGA.AA.A00N.01A	10	19492623	21435233	63	0.8719	LARGE-GAIN	FOCAL	4	"C10orf113,MALRD1,NEBL,PLXDC2"
TCGA.A6.A567	10	19670410	22102283	922	0.6809	LARGE-GAIN	FOCAL	8	"C10orf113,CASC10,DNAJC1,MALRD1,MLLT10,NEBL,PLXDC2,SKIDA1"
TCGA.AG.3906.01A	10	21784479	21827705	4	1.3739	LARGE-GAIN	FOCAL	3	"CASC10,MLLT10,SKIDA1"
TCGA.AG.A01W.01A	10	22332112	22720626	17	0.6888	LARGE-GAIN	FOCAL	5	"BMI1,COMMD3,COMMD3-BMI1,EBLN1,SPAG6"
TCGA.AG.3906.01A	10	22606766	22618232	9	1.1473	LARGE-GAIN	FOCAL	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AA.A02E.01A	10	22634463	22690043	8	0.6984	LARGE-GAIN	FOCAL	1	SPAG6
TCGA.AA.A00N.01A	10	24498056	24896381	37	0.9246	LARGE-GAIN	FOCAL	2	"ARHGAP21,KIAA1217"
TCGA.AA.A01K.01A	10	24809022	24810683	2	3.8152	LARGE-GAIN	FOCAL	1	KIAA1217
TCGA.AG.3906.01A	10	24955829	25010701	3	1.3438	LARGE-GAIN	FOCAL	1	ARHGAP21
TCGA.AA.A010.01A	10	27700690	27793856	5	1.5212	LARGE-GAIN	FOCAL	2	"PTCHD3,RAB18"
TCGA.AG.A01W.01A	10	28567426	28864473	4	0.8858	LARGE-GAIN	FOCAL	2	"MPP7,WAC"
TCGA.AA.A010.01A	10	29577996	29783787	23	0.9197	LARGE-GAIN	FOCAL	2	"LYZL1,SVIL"
TCGA.G4.6317	10	30102984	30108559	3	1.7365	LARGE-GAIN	FOCAL	0	None
TCGA.G4.6303	10	30614273	32368320	602	0.7358	LARGE-GAIN	FOCAL	7	"ARHGAP12,KIF5B,LYZL2,MAP3K8,MTPAP,ZEB1,ZNF438"
TCGA.AA.A010.01A	10	30914992	31138083	6	1.083	LARGE-GAIN	FOCAL	2	"LYZL2,ZNF438"
TCGA.AA.3862.01A	10	32573649	33218709	63	0.6868	LARGE-GAIN	FOCAL	3	"CCDC7,EPC1,ITGB1"
TCGA.AA.3861.01A	10	32832184	33211529	39	0.8915	LARGE-GAIN	FOCAL	2	"CCDC7,ITGB1"
TCGA.AZ.4684.01A	10	33123696	33135254	5	1.8612	LARGE-GAIN	FOCAL	1	CCDC7
TCGA.AG.A01W.01A	10	35968830	37454825	4	1.051	LARGE-GAIN	FOCAL	1	ANKRD30A
TCGA.AA.3509.01A	10	37436245	38120496	19	1.4706	LARGE-GAIN	FOCAL	3	"ANKRD30A,MTRNR2L7,ZNF248"
TCGA.AZ.4684.01A	10	37438533	38120496	18	1.449	LARGE-GAIN	FOCAL	3	"ANKRD30A,MTRNR2L7,ZNF248"
TCGA.AA.A00N.01A	10	37440932	38120496	18	0.7922	LARGE-GAIN	FOCAL	3	"ANKRD30A,MTRNR2L7,ZNF248"
TCGA.CK.4948.01B	10	37505138	37507911	3	0.8499	LARGE-GAIN	FOCAL	1	ANKRD30A
TCGA.AA.3509.01A	10	38407267	38681890	4	1.6137	LARGE-GAIN	FOCAL	1	ZNF37A
TCGA.DM.A1D9	10	42477858	42502345	4	1.2385	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	10	43012400	43017216	7	1.2884	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	10	43088010	43089659	4	1.4275	LARGE-GAIN	FOCAL	1	ZNF33B
TCGA.AA.3861.01A	10	43316064	43326266	4	3.2533	LARGE-GAIN	FOCAL	1	BMS1
TCGA.AA.3862.01A	10	43316064	43326266	4	3.2942	LARGE-GAIN	FOCAL	1	BMS1
TCGA.AM.5820	10	43371349	43377165	6	0.9476	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	10	45406899	45430104	5	0.89	LARGE-GAIN	FOCAL	1	TMEM72
TCGA.DM.A28M.01A	10	46146964	46224303	6	0.6944	LARGE-GAIN	FOCAL	2	"FAM21C,ZFAND4"
TCGA.AA.3862.01A	10	46146964	46233366	7	0.9792	LARGE-GAIN	FOCAL	2	"FAM21C,ZFAND4"
TCGA.AA.3862.01A	10	46238788	46918526	20	2.2523	LARGE-GAIN	FOCAL	3	"AGAP4,FAM21C,PTPN20"
TCGA.F4.6459	10	46995473	47099528	7	0.9317	LARGE-GAIN	FOCAL	3	"CH17-360D5.1,GPRIN2,NPY4R"
TCGA.AA.3862.01A	10	47087642	48025274	8	2.1754	LARGE-GAIN	FOCAL	8	"AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM25C,FAM25G,NPY4R"
TCGA.AA.A00Q.01A	10	47163910	47169745	6	0.9872	LARGE-GAIN	FOCAL	1	ANXA8
TCGA.AA.3509.01A	10	48003912	48032954	5	1.6453	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3862.01A	10	48029172	49386041	26	0.7859	LARGE-GAIN	FOCAL	10	"AGAP9,ANXA8,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,PTPN20,RBP3,ZNF488"
TCGA.AA.A010.01A	10	48381854	48390007	7	0.7108	LARGE-GAIN	FOCAL	1	RBP3
TCGA.CK.5914.01A	10	48771270	49459569	32	0.7786	LARGE-GAIN	FOCAL	4	"FAM25C,FAM25G,FRMPD2,PTPN20"
TCGA.AA.A00N.01A	10	49380942	49617862	27	0.9278	LARGE-GAIN	FOCAL	2	"FRMPD2,MAPK8"
TCGA.AA.3509.01A	10	49459569	49642870	13	0.785	LARGE-GAIN	FOCAL	2	"FRMPD2,MAPK8"
TCGA.AZ.4684.01A	10	49609653	49634376	8	1.0947	LARGE-GAIN	FOCAL	1	MAPK8
TCGA.DM.A28M.01A	10	49612863	49642870	11	0.7582	LARGE-GAIN	FOCAL	1	MAPK8
TCGA.AA.A00N.01A	10	49687604	50189360	68	0.9055	LARGE-GAIN	FOCAL	3	"ARHGAP22,LRRC18,WDFY4"
TCGA.AA.A00N.01A	10	50603382	50708562	15	0.7151	LARGE-GAIN	FOCAL	2	"DRGX,ERCC6"
TCGA.AG.A01W.01A	10	50613281	50617674	5	1.3113	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5820	10	50943067	50990104	12	0.7152	LARGE-GAIN	FOCAL	1	OGDHL
TCGA.AG.A01L.01A	10	50943236	50948714	6	0.6818	LARGE-GAIN	FOCAL	1	OGDHL
TCGA.AA.3861.01A	10	51065331	51374298	9	2.3571	LARGE-GAIN	FOCAL	2	"PARG,TIMM23B"
TCGA.AA.3862.01A	10	51065331	51374298	13	1.8367	LARGE-GAIN	FOCAL	2	"PARG,TIMM23B"
TCGA.AA.A02K.01A	10	51225494	51568276	10	1.0123	LARGE-GAIN	FOCAL	4	"MSMB,NCOA4,PARG,TIMM23B"
TCGA.AA.3861.01A	10	51589137	51892549	17	1.4578	LARGE-GAIN	FOCAL	5	"AGAP6,FAM21A,NCOA4,TIMM23,TIMM23B"
TCGA.AA.3862.01A	10	51620253	51994136	23	1.8872	LARGE-GAIN	FOCAL	5	"AGAP6,ASAH2,FAM21A,TIMM23,TIMM23B"
TCGA.AG.A020	10	51779448	53009608	381	0.7493	LARGE-GAIN	FOCAL	6	"A1CF,ASAH2,ASAH2B,FAM21A,PRKG1,SGMS1"
TCGA.CK.5914.01A	10	51851868	52008197	21	0.6943	LARGE-GAIN	FOCAL	2	"ASAH2,FAM21A"
TCGA.AG.3891.01A	10	51863755	51873608	3	0.7634	LARGE-GAIN	FOCAL	1	FAM21A
TCGA.AA.3939.01A	10	51863755	51892549	5	0.8761	LARGE-GAIN	FOCAL	1	FAM21A
TCGA.A6.3810.01A	10	51965704	51978232	4	0.7922	LARGE-GAIN	FOCAL	1	ASAH2
TCGA.AA.A00N.01A	10	51974455	53921599	37	0.9283	LARGE-GAIN	FOCAL	6	"A1CF,ASAH2,ASAH2B,CSTF2T,PRKG1,SGMS1"
TCGA.AA.A00N.01A	10	55779935	59958950	29	0.8384	LARGE-GAIN	FOCAL	4	"IPMK,MTRNR2L5,PCDH15,ZWINT"
TCGA.AY.5543	10	57877922	57880488	5	0.8516	LARGE-GAIN	FOCAL	0	None
TCGA.AY.5543	10	58881831	58883171	4	0.9244	LARGE-GAIN	FOCAL	0	None
TCGA.AY.A69D	10	61725912	61726938	4	1.4334	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	10	62545375	62553618	4	1.5395	LARGE-GAIN	FOCAL	1	CDK1
TCGA.AA.3939.01A	10	62631894	62637618	3	0.9937	LARGE-GAIN	FOCAL	1	RHOBTB1
TCGA.AG.3881	10	67555073	67855935	160	0.7989	LARGE-GAIN	FOCAL	1	CTNNA3
TCGA.AA.A00N.01A	10	67680048	69644512	26	0.7483	LARGE-GAIN	FOCAL	4	"CTNNA3,DNAJC12,LRRTM3,SIRT1"
TCGA.EI.7002	10	68791525	68824792	12	0.7935	LARGE-GAIN	FOCAL	2	"CTNNA3,LRRTM3"
TCGA.AG.3598	10	69493777	69969985	88	0.8759	LARGE-GAIN	FOCAL	4	"DNAJC12,HERC4,MYPN,SIRT1"
TCGA.AG.3598	10	70028862	70577221	108	0.7732	LARGE-GAIN	FOCAL	7	"CCAR1,DNA2,HNRNPH3,PBLD,RUFY2,SLC25A16,TET1"
TCGA.AA.A00L.01A	10	70516996	70550895	10	0.7452	LARGE-GAIN	FOCAL	1	CCAR1
TCGA.AA.3861.01A	10	70547674	70694533	17	1.3013	LARGE-GAIN	FOCAL	3	"CCAR1,DDX50,STOX1"
TCGA.AA.3862.01A	10	70547674	70694533	17	1.4469	LARGE-GAIN	FOCAL	3	"CCAR1,DDX50,STOX1"
TCGA.AA.3939.01A	10	71392527	71562153	2	2.7478	LARGE-GAIN	FOCAL	2	"C10orf35,COL13A1"
TCGA.AG.3909.01A	10	73103919	73326487	9	0.6793	LARGE-GAIN	FOCAL	2	"CDH23,SLC29A3"
TCGA.CK.5914.01A	10	73103919	73326487	9	0.8041	LARGE-GAIN	FOCAL	2	"CDH23,SLC29A3"
TCGA.AG.A020	10	73427291	73443044	10	1.0629	LARGE-GAIN	FOCAL	1	CDH23
TCGA.AG.3909.01A	10	73437162	73450187	5	0.8975	LARGE-GAIN	FOCAL	1	CDH23
TCGA.AA.3939.01A	10	73577149	73579943	5	1.5164	LARGE-GAIN	FOCAL	1	PSAP
TCGA.AA.A00N.01A	10	74182943	74899035	55	0.764	LARGE-GAIN	FOCAL	7	"ECD,MCU,MICU1,NUDT13,OIT3,P4HA1,PLA2G12B"
TCGA.AG.A01W.01A	10	74622281	74673553	13	0.778	LARGE-GAIN	FOCAL	2	"MCU,OIT3"
TCGA.AA.A010.01A	10	75003161	75013677	12	1.2724	LARGE-GAIN	FOCAL	3	"CFAP70,DNAJC9,MRPS16"
TCGA.AG.A00Y.01A	10	75506550	75612880	68	0.7895	LARGE-GAIN	FOCAL	6	"CAMK2G,CHCHD1,FUT11,NDST2,SEC24C,ZSWIM8"
TCGA.AA.A00N.01A	10	75757919	75877741	21	0.8363	LARGE-GAIN	FOCAL	1	VCL
TCGA.AA.A01Q.01A	10	75757919	76970876	73	0.6946	LARGE-GAIN	FOCAL	8	"ADK,AP3M1,DUPD1,DUSP13,KAT6B,SAMD8,VCL,VDAC2"
TCGA.AG.A00C.01A	10	76971932	76990640	7	0.7156	LARGE-GAIN	FOCAL	1	VDAC2
TCGA.AA.3518	10	77410781	77411623	3	0.9575	LARGE-GAIN	FOCAL	1	C10orf11
TCGA.AA.A00N.01A	10	77818377	79163578	38	0.9105	LARGE-GAIN	FOCAL	2	"C10orf11,KCNMA1"
TCGA.AF.A56K	10	79272141	79946595	240	1.1256	LARGE-GAIN	FOCAL	4	"DLG5,KCNMA1,POLR3A,RPS24"
TCGA.AA.A010.01A	10	79552159	79795051	63	0.7368	LARGE-GAIN	FOCAL	3	"DLG5,POLR3A,RPS24"
TCGA.AA.A01Q.01A	10	79628830	80961328	37	0.7112	LARGE-GAIN	FOCAL	4	"DLG5,POLR3A,RPS24,ZMIZ1"
TCGA.AF.A56K	10	79947527	80097032	72	1.8844	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3881	10	80058891	80304555	124	1.5782	LARGE-GAIN	FOCAL	0	None
TCGA.AF.A56K	10	80097951	80338907	130	1.1995	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3881	10	80306806	80932876	328	1.9783	LARGE-GAIN	FOCAL	1	ZMIZ1
TCGA.AF.A56K	10	80342674	80565395	136	1.9511	LARGE-GAIN	FOCAL	0	None
TCGA.AF.A56K	10	80565885	80670347	46	1.1856	LARGE-GAIN	FOCAL	0	None
TCGA.AF.A56K	10	80684974	81248583	271	1.8746	LARGE-GAIN	FOCAL	3	"PPIF,ZCCHC24,ZMIZ1"
TCGA.AA.A00N.01A	10	81316973	81373481	8	2.0146	LARGE-GAIN	FOCAL	2	"SFTPA1,SFTPA2"
TCGA.CK.5914.01A	10	81316973	81706190	18	0.7647	LARGE-GAIN	FOCAL	4	"NUTM2B,SFTPA1,SFTPA2,SFTPD"
TCGA.AA.A01Q.01A	10	81316973	81838403	16	1.108	LARGE-GAIN	FOCAL	5	"NUTM2B,SFTPA1,SFTPA2,SFTPD,TMEM254"
TCGA.AF.A56K	10	81626661	81828409	54	1.3052	LARGE-GAIN	FOCAL	1	SFTPD
TCGA.AA.A00N.01A	10	81697579	81706190	7	1.5769	LARGE-GAIN	FOCAL	1	SFTPD
TCGA.AF.A56K	10	81985363	82004288	4	1.595	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01Q.01A	10	82329861	85944378	21	0.6833	LARGE-GAIN	FOCAL	4	"C10orf99,GHITM,NRG3,SH2D4B"
TCGA.AA.A00N.01A	10	82363298	84744803	15	0.924	LARGE-GAIN	FOCAL	2	"NRG3,SH2D4B"
TCGA.AG.3881	10	82651400	82675164	20	1.3359	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3881	10	82685415	82877973	61	1.4037	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	10	85993842	86008618	6	1.371	LARGE-GAIN	FOCAL	2	"LRIT1,RGR"
TCGA.AA.A01Q.01A	10	86001036	87675880	31	0.8113	LARGE-GAIN	FOCAL	4	"CCSER2,GRID1,LRIT1,RGR"
TCGA.AZ.4684.01A	10	86130821	86237278	8	0.8215	LARGE-GAIN	FOCAL	1	CCSER2
TCGA.AA.3509.01A	10	86130821	86259577	9	0.756	LARGE-GAIN	FOCAL	1	CCSER2
TCGA.CK.5914.01A	10	86237278	88024417	18	0.6804	LARGE-GAIN	FOCAL	2	"CCSER2,GRID1"
TCGA.AG.3598	10	86306684	86796924	200	2.4178	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3598	10	86797760	87511062	296	1.2688	LARGE-GAIN	FOCAL	1	GRID1
TCGA.AA.A00N.01A	10	87362023	88024417	15	1.5061	LARGE-GAIN	FOCAL	1	GRID1
TCGA.AG.3906.01A	10	88123650	88226996	12	0.819	LARGE-GAIN	FOCAL	2	"GRID1,WAPAL"
TCGA.AG.A01W.01A	10	88693003	88720177	11	0.7653	LARGE-GAIN	FOCAL	2	"MMRN2,SNCG"
TCGA.AG.A01W.01A	10	88803044	88844046	11	0.679	LARGE-GAIN	FOCAL	1	GLUD1
TCGA.AA.3861.01A	10	88836277	89117996	11	1.8316	LARGE-GAIN	FOCAL	3	"FAM35A,GLUD1,NUTM2A"
TCGA.G4.6299	10	89103047	89167879	3	1.5067	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	10	89419666	89552365	20	0.7909	LARGE-GAIN	FOCAL	2	"ATAD1,PAPSS2"
TCGA.CK.5914.01A	10	89468926	89544190	17	0.7358	LARGE-GAIN	FOCAL	2	"ATAD1,PAPSS2"
TCGA.AG.A01W.01A	10	89534189	89643709	7	1.2056	LARGE-GAIN	FOCAL	3	"ATAD1,KLLN,PTEN"
TCGA.AA.A00N.01A	10	90366380	90490688	13	1.2701	LARGE-GAIN	FOCAL	3	"LIPF,LIPJ,LIPK"
TCGA.AA.A00N.01A	10	90491883	90502942	4	0.7505	LARGE-GAIN	FOCAL	1	LIPK
TCGA.CK.5914.01A	10	90512265	90562605	11	0.8366	LARGE-GAIN	FOCAL	3	"LIPK,LIPM,LIPN"
TCGA.AA.A00N.01A	10	90534169	90583000	13	0.8152	LARGE-GAIN	FOCAL	3	"ANKRD22,LIPM,LIPN"
TCGA.CK.5914.01A	10	90672837	90732902	15	1.0838	LARGE-GAIN	FOCAL	2	"ACTA2,STAMBPL1"
TCGA.AA.A00N.01A	10	90694928	90708510	8	1.6398	LARGE-GAIN	FOCAL	1	ACTA2
TCGA.AZ.4684.01A	10	91497142	91533675	15	1.1145	LARGE-GAIN	FOCAL	1	KIF20B
TCGA.AG.A00C.01A	10	94452078	94594437	4	0.7424	LARGE-GAIN	FOCAL	1	HHEX
TCGA.AA.A010.01A	10	95066641	95159112	38	0.7648	LARGE-GAIN	FOCAL	1	MYOF
TCGA.AA.3819	10	95232912	95233392	3	1.2908	LARGE-GAIN	FOCAL	1	MYOF
TCGA.AA.3864	10	95232912	95233392	3	1.6274	LARGE-GAIN	FOCAL	1	MYOF
TCGA.AA.A00N.01A	10	95848801	96087645	30	0.8797	LARGE-GAIN	FOCAL	1	PLCE1
TCGA.AG.A020	10	96067946	96324150	39	1.3259	LARGE-GAIN	FOCAL	4	"HELLS,NOC3L,PLCE1,TBC1D12"
TCGA.AA.A00D.01A	10	96313866	96331164	4	0.696	LARGE-GAIN	FOCAL	1	HELLS
TCGA.CK.5914.01A	10	96361236	96494973	10	0.9126	LARGE-GAIN	FOCAL	2	"CYP2C18,HELLS"
TCGA.CK.5914.01A	10	96602582	96748552	12	0.8336	LARGE-GAIN	FOCAL	2	"CYP2C19,CYP2C9"
TCGA.AA.A010.01A	10	97096248	97117336	9	0.9265	LARGE-GAIN	FOCAL	1	SORBS1
TCGA.AA.A010.01A	10	97154343	97194325	10	0.8599	LARGE-GAIN	FOCAL	1	SORBS1
TCGA.AA.3509.01A	10	97916103	97922623	4	1.9061	LARGE-GAIN	FOCAL	1	ZNF518A
TCGA.AZ.4684.01A	10	97916103	97922623	4	1.8779	LARGE-GAIN	FOCAL	1	ZNF518A
TCGA.AA.A00N.01A	10	97916103	98273221	60	0.8395	LARGE-GAIN	FOCAL	5	"BLNK,DNTT,OPALIN,TLL2,ZNF518A"
TCGA.AA.A010.01A	10	98118555	98170065	14	0.9557	LARGE-GAIN	FOCAL	2	"OPALIN,TLL2"
TCGA.AA.3509.01A	10	98281956	98287746	3	1.5795	LARGE-GAIN	FOCAL	1	TM9SF3
TCGA.AZ.4684.01A	10	98281956	98287746	3	1.3632	LARGE-GAIN	FOCAL	1	TM9SF3
TCGA.CK.5914.01A	10	98361989	98408379	11	0.7011	LARGE-GAIN	FOCAL	1	PIK3AP1
TCGA.AA.A010.01A	10	98760842	98945188	37	0.8425	LARGE-GAIN	FOCAL	1	SLIT1
TCGA.AA.A00N.01A	10	99116802	99186013	31	0.6855	LARGE-GAIN	FOCAL	1	RRP12
TCGA.AG.A032.01A	10	99139001	99139347	2	2.9613	LARGE-GAIN	FOCAL	1	RRP12
TCGA.AG.3906.01A	10	99190087	99198396	8	1.3358	LARGE-GAIN	FOCAL	2	"EXOSC1,PGAM1"
TCGA.AG.3891.01A	10	99190087	99202971	10	0.7552	LARGE-GAIN	FOCAL	2	"EXOSC1,PGAM1"
TCGA.AA.3862.01A	10	99218436	99376913	47	0.8099	LARGE-GAIN	FOCAL	6	"ANKRD2,C10orf62,HOGA1,MMS19,MORN4,UBTD1"
TCGA.AA.A010.01A	10	99257983	99371215	20	0.9583	LARGE-GAIN	FOCAL	5	"ANKRD2,C10orf62,HOGA1,MMS19,UBTD1"
TCGA.AA.A00N.01A	10	99327633	99371215	18	0.8801	LARGE-GAIN	FOCAL	4	"ANKRD2,C10orf62,HOGA1,UBTD1"
TCGA.AA.A00J.01A	10	99358480	99358806	2	4.8299	LARGE-GAIN	FOCAL	1	HOGA1
TCGA.AA.A00N.01A	10	99642477	99695880	11	1.0092	LARGE-GAIN	FOCAL	1	CRTAC1
TCGA.AG.3909.01A	10	99643916	99682979	9	0.6805	LARGE-GAIN	FOCAL	1	CRTAC1
TCGA.AA.A010.01A	10	99643916	99695880	10	0.904	LARGE-GAIN	FOCAL	1	CRTAC1
TCGA.CK.5914.01A	10	100143491	100170604	14	0.7819	LARGE-GAIN	FOCAL	1	PYROXD2
TCGA.AA.A010.01A	10	100143491	100193688	27	0.87	LARGE-GAIN	FOCAL	2	"HPS1,PYROXD2"
TCGA.AG.3909.01A	10	100144667	100167641	12	0.9094	LARGE-GAIN	FOCAL	1	PYROXD2
TCGA.AA.A00N.01A	10	100144667	100189244	23	1.2169	LARGE-GAIN	FOCAL	2	"HPS1,PYROXD2"
TCGA.CK.5914.01A	10	101117250	101165844	15	0.6943	LARGE-GAIN	FOCAL	2	"CNNM1,GOT1"
TCGA.AA.A00N.01A	10	101120540	101190154	17	1.1198	LARGE-GAIN	FOCAL	2	"CNNM1,GOT1"
TCGA.AG.3906.01A	10	101590017	101610307	11	1.4622	LARGE-GAIN	FOCAL	1	ABCC2
TCGA.AG.3891.01A	10	101590423	101606666	9	0.7091	LARGE-GAIN	FOCAL	1	ABCC2
TCGA.AG.3906.01A	10	102020675	102048104	8	1.1477	LARGE-GAIN	FOCAL	3	"BLOC1S2,CWF19L1,PKD2L1"
TCGA.AA.3815.01A	10	102052997	102054682	3	1.0872	LARGE-GAIN	FOCAL	1	PKD2L1
TCGA.AG.3906.01A	10	102740856	102765195	14	1.1018	LARGE-GAIN	FOCAL	4	"C10orf2,LZTS2,MRPL43,SEMA4G"
TCGA.CK.5914.01A	10	102988211	103221677	4	0.9686	LARGE-GAIN	FOCAL	2	"BTRC,LBX1"
TCGA.AG.3906.01A	10	103530034	103553616	13	0.731	LARGE-GAIN	FOCAL	3	"FGF8,MGEA5,NPM3"
TCGA.AG.3906.01A	10	103772515	103870574	14	0.9119	LARGE-GAIN	FOCAL	3	"C10orf76,HPS6,LDB1"
TCGA.AG.3891.01A	10	103773667	103870574	13	0.7278	LARGE-GAIN	FOCAL	3	"C10orf76,HPS6,LDB1"
TCGA.AG.3906.01A	10	104155627	104173496	17	1.3533	LARGE-GAIN	FOCAL	2	"NFKB2,PSD"
TCGA.AA.A010.01A	10	104263868	104377000	10	0.7345	LARGE-GAIN	FOCAL	1	SUFU
TCGA.AA.A00N.01A	10	104309680	104378729	9	0.9385	LARGE-GAIN	FOCAL	1	SUFU
TCGA.AA.A010.01A	10	104459092	104634293	35	0.8533	LARGE-GAIN	FOCAL	6	"ARL3,AS3MT,C10orf32,CYP17A1,SFXN2,WBP1L"
TCGA.AA.A00N.01A	10	104473930	104613992	25	0.8187	LARGE-GAIN	FOCAL	5	"ARL3,C10orf32,CYP17A1,SFXN2,WBP1L"
TCGA.AA.3930.01A	10	104569598	104596772	9	0.8072	LARGE-GAIN	FOCAL	2	"CYP17A1,WBP1L"
TCGA.AA.A024.01A	10	104591218	104593735	3	2.5204	LARGE-GAIN	FOCAL	1	CYP17A1
TCGA.AG.3891.01A	10	105048080	105108435	8	0.7045	LARGE-GAIN	FOCAL	2	"INA,PCGF6"
TCGA.AG.A032.01A	10	105201531	105201962	2	2.4274	LARGE-GAIN	FOCAL	1	PDCD11
TCGA.AA.3861.01A	10	105752720	105780196	13	1.7013	LARGE-GAIN	FOCAL	1	SLK
TCGA.AA.3862.01A	10	105752720	105780196	13	2.0422	LARGE-GAIN	FOCAL	1	SLK
TCGA.AA.A01Q.01A	10	105792422	105798137	9	0.8056	LARGE-GAIN	FOCAL	1	COL17A1
TCGA.AA.A00N.01A	10	105792422	105802099	15	0.9626	LARGE-GAIN	FOCAL	1	COL17A1
TCGA.AA.A02H.01A	10	105900578	105905968	5	1.1242	LARGE-GAIN	FOCAL	1	CFAP43
TCGA.AA.A010.01A	10	105938727	105951910	8	0.9672	LARGE-GAIN	FOCAL	1	CFAP43
TCGA.AA.A010.01A	10	105991876	106014880	3	2.2592	LARGE-GAIN	FOCAL	2	"CFAP43,GSTO1"
TCGA.AA.A010.01A	10	106019284	106113560	12	0.7492	LARGE-GAIN	FOCAL	4	"CFAP58,GSTO1,GSTO2,ITPRIP"
TCGA.AA.A00N.01A	10	106139769	111648221	79	1.0373	LARGE-GAIN	FOCAL	4	"CFAP58,SORCS1,SORCS3,XPNPEP1"
TCGA.AD.6965	10	109529802	109536093	3	0.8785	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	10	111640548	111652712	8	1.1066	LARGE-GAIN	FOCAL	1	XPNPEP1
TCGA.AA.3862.01A	10	112340620	112541319	23	1.127	LARGE-GAIN	FOCAL	2	"RBM20,SMC3"
TCGA.AA.3861.01A	10	112340620	112543053	24	0.8956	LARGE-GAIN	FOCAL	2	"RBM20,SMC3"
TCGA.F4.6704	10	112536718	112643416	50	1.1011	LARGE-GAIN	FOCAL	2	"PDCD4,RBM20"
TCGA.D5.6537	10	112633917	112691146	13	1.1295	LARGE-GAIN	FOCAL	3	"BBIP1,PDCD4,SHOC2"
TCGA.AA.A010.01A	10	114171617	114574998	29	0.8219	LARGE-GAIN	FOCAL	3	"ACSL5,VTI1A,ZDHHC6"
TCGA.AA.A010.01A	10	114925286	115371946	27	0.9531	LARGE-GAIN	FOCAL	3	"HABP2,NRAP,TCF7L2"
TCGA.CK.5914.01A	10	115371946	115413730	26	0.8029	LARGE-GAIN	FOCAL	1	NRAP
TCGA.AA.A010.01A	10	115536851	115618240	15	0.9384	LARGE-GAIN	FOCAL	3	"DCLRE1A,NHLRC2,PLEKHS1"
TCGA.AA.3509.01A	10	115618240	115667992	10	1.0014	LARGE-GAIN	FOCAL	1	NHLRC2
TCGA.AZ.4684.01A	10	115618240	115667992	10	1.0084	LARGE-GAIN	FOCAL	1	NHLRC2
TCGA.AZ.4684.01A	10	116919784	117154118	12	1.1498	LARGE-GAIN	FOCAL	1	ATRNL1
TCGA.AA.3509.01A	10	116919784	117607351	18	0.9295	LARGE-GAIN	FOCAL	1	ATRNL1
TCGA.DM.A282.01A	10	117226626	117228645	2	1.3008	LARGE-GAIN	FOCAL	1	ATRNL1
TCGA.DM.A28M.01A	10	117226626	117278752	3	1.6606	LARGE-GAIN	FOCAL	1	ATRNL1
TCGA.G4.6299	10	117474954	117568583	44	1.0994	LARGE-GAIN	FOCAL	1	ATRNL1
TCGA.AZ.4684.01A	10	118100194	118196192	8	1.1043	LARGE-GAIN	FOCAL	2	"CCDC172,PNLIPRP3"
TCGA.AG.3906.01A	10	118891675	118897300	3	1.765	LARGE-GAIN	FOCAL	1	VAX1
TCGA.AA.3509.01A	10	119768462	120446034	13	0.6967	LARGE-GAIN	FOCAL	4	"CACUL1,FAM204A,PRLHR,RAB11FIP2"
TCGA.AA.A010.01A	10	120095677	120513861	11	0.7856	LARGE-GAIN	FOCAL	3	"CACUL1,FAM204A,PRLHR"
TCGA.AG.3906.01A	10	120795502	120803514	5	0.8803	LARGE-GAIN	FOCAL	1	EIF3A
TCGA.AG.3906.01A	10	120867461	120936485	25	0.816	LARGE-GAIN	FOCAL	3	"FAM45A,PRDX3,SFXN4"
TCGA.AA.A00N.01A	10	122334606	122610877	5	1.75	LARGE-GAIN	FOCAL	2	"PPAPDC1A,WDR11"
TCGA.F4.6704	10	123193997	124129794	424	1.0873	LARGE-GAIN	FOCAL	5	"ATE1,BTBD16,FGFR2,NSMCE4A,TACC2"
TCGA.AA.A010.01A	10	123243174	123279466	12	0.7991	LARGE-GAIN	FOCAL	1	FGFR2
TCGA.CK.5914.01A	10	124320216	124380796	32	0.795	LARGE-GAIN	FOCAL	1	DMBT1
TCGA.AG.3909.01A	10	124329605	124380796	30	0.6979	LARGE-GAIN	FOCAL	1	DMBT1
TCGA.AA.A00N.01A	10	125447403	125622079	13	0.7467	LARGE-GAIN	FOCAL	2	"CPXM2,GPR26"
TCGA.AG.A00C.01A	10	126086492	126100495	8	0.7254	LARGE-GAIN	FOCAL	1	OAT
TCGA.AA.3815.01A	10	126515132	126517905	3	0.9318	LARGE-GAIN	FOCAL	1	FAM175B
TCGA.AZ.4684.01A	10	127411573	127426813	11	0.728	LARGE-GAIN	FOCAL	1	EDRF1
TCGA.AA.3509.01A	10	127411573	127428985	12	0.7604	LARGE-GAIN	FOCAL	1	EDRF1
TCGA.DM.A28M.01A	10	127421951	127424222	3	1.7907	LARGE-GAIN	FOCAL	1	EDRF1
TCGA.AA.A024.01A	10	127527568	127541642	6	0.8968	LARGE-GAIN	FOCAL	2	"BCCIP,DHX32"
TCGA.AA.A00N.01A	10	127693404	128192519	32	0.8384	LARGE-GAIN	FOCAL	3	"ADAM12,C10orf90,FANK1"
TCGA.AY.6196	10	131458270	131471721	3	2.1049	LARGE-GAIN	FOCAL	1	MGMT
TCGA.AG.3891.01A	10	131671677	131761140	5	0.72	LARGE-GAIN	FOCAL	1	EBF3
TCGA.AG.3906.01A	10	131755455	131761140	3	1.2015	LARGE-GAIN	FOCAL	1	EBF3
TCGA.AA.A01Q.01A	10	133962869	133976661	4	0.9502	LARGE-GAIN	FOCAL	1	JAKMIP3
TCGA.AA.A024.01A	10	134750941	134752054	2	4.2066	LARGE-GAIN	FOCAL	1	CFAP46
TCGA.AG.A01W.01A	10	135228901	135290173	4	0.8685	LARGE-GAIN	FOCAL	2	"MTG1,SPRN"
TCGA.AG.3906.01A	11	230421	247230	8	1.0843	LARGE-GAIN	FOCAL	2	"PSMD13,SIRT3"
TCGA.AG.3906.01A	11	292836	308152	4	1.2876	LARGE-GAIN	FOCAL	3	"ATHL1,IFITM2,IFITM5"
TCGA.AA.A01Q.01A	11	372068	433778	20	0.8397	LARGE-GAIN	FOCAL	4	"ANO9,B4GALNT4,PKP3,SIGIRR"
TCGA.AG.3906.01A	11	687863	700565	5	1.3712	LARGE-GAIN	FOCAL	2	"DEAF1,TMEM80"
TCGA.DC.4749	11	840033	946984	11	0.8105	LARGE-GAIN	FOCAL	4	"AP2A2,CHID1,POLR2L,TSPAN4"
TCGA.AA.3939.01A	11	1000385	1015712	9	0.8688	LARGE-GAIN	FOCAL	2	"AP2A2,MUC6"
TCGA.AG.A01W.01A	11	1413795	1423053	7	1.3775	LARGE-GAIN	FOCAL	1	BRSK2
TCGA.AA.3861.01A	11	1605604	1643325	9	1.6157	LARGE-GAIN	FOCAL	4	"KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4"
TCGA.AA.3862.01A	11	1605604	1643325	9	1.5525	LARGE-GAIN	FOCAL	4	"KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4"
TCGA.AA.A01Q.01A	11	1605604	1643325	9	1.0021	LARGE-GAIN	FOCAL	4	"KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4"
TCGA.AA.A00N.01A	11	1606066	1629562	6	0.8616	LARGE-GAIN	FOCAL	3	"KRTAP5-1,KRTAP5-2,KRTAP5-3"
TCGA.AM.5820	11	1845919	1909005	9	1.2446	LARGE-GAIN	FOCAL	3	"LSP1,SYT8,TNNI2"
TCGA.AM.5820	11	1944201	2054500	26	1.0309	LARGE-GAIN	FOCAL	3	"HOTS,MRPL23,TNNT3"
TCGA.G4.6314	11	2029277	2282903	47	1.6393	LARGE-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.5M.AAT5	11	2087219	2119118	13	0.7261	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3989	11	2087726	2270240	40	0.6828	LARGE-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AM.5820	11	2108793	2241320	24	0.9605	LARGE-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.D5.6533	11	2108793	2294536	33	0.7354	LARGE-GAIN	FOCAL	5	"ASCL2,IGF2,INS,INS-IGF2,TH"
TCGA.CM.6166	11	2111530	2269189	29	0.916	LARGE-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AH.6897	11	2138138	2234168	17	0.8367	LARGE-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AA.3831	11	2138138	2260542	23	0.8109	LARGE-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AG.3894	11	2138138	2270240	27	0.7176	LARGE-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AA.3695	11	2157043	2234168	12	0.6803	LARGE-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.G4.6314	11	2300180	2595286	58	1.632	LARGE-GAIN	FOCAL	6	"C11orf21,CD81,KCNQ1,TRPM5,TSPAN32,TSSC4"
TCGA.AM.5820	11	2530161	2613840	19	0.9154	LARGE-GAIN	FOCAL	1	KCNQ1
TCGA.AM.5820	11	2705174	2773470	28	0.7324	LARGE-GAIN	FOCAL	1	KCNQ1
TCGA.AM.5820	11	2793864	2938959	37	0.8877	LARGE-GAIN	FOCAL	4	"CDKN1C,KCNQ1,SLC22A18,SLC22A18AS"
TCGA.AG.3906.01A	11	2993285	3026533	8	0.8232	LARGE-GAIN	FOCAL	2	"CARS,NAP1L4"
TCGA.AM.5820	11	3140195	3249828	30	0.7672	LARGE-GAIN	FOCAL	3	"MRGPRE,MRGPRG,OSBPL5"
TCGA.AA.A00Q.01A	11	3249042	3392757	6	0.6873	LARGE-GAIN	FOCAL	2	"MRGPRE,ZNF195"
TCGA.AA.A00D.01A	11	3380331	3392757	5	0.7408	LARGE-GAIN	FOCAL	1	ZNF195
TCGA.DM.A1D6	11	3798359	3808343	3	1.1645	LARGE-GAIN	FOCAL	1	NUP98
TCGA.AA.A00N.01A	11	3988730	4116156	12	0.6931	LARGE-GAIN	FOCAL	2	"RRM1,STIM1"
TCGA.AA.A01Q.01A	11	4076725	4116156	10	0.7428	LARGE-GAIN	FOCAL	2	"RRM1,STIM1"
TCGA.AG.A01W.01A	11	4110041	4345131	5	1.0517	LARGE-GAIN	FOCAL	2	"RRM1,STIM1"
TCGA.AG.3906.01A	11	4141020	4159373	11	0.6849	LARGE-GAIN	FOCAL	1	RRM1
TCGA.AA.A00N.01A	11	5220958	5289651	9	1.2154	LARGE-GAIN	FOCAL	6	"HBB,HBD,HBE1,HBG1,HBG2,OR51V1"
TCGA.AA.A00N.01A	11	5363779	5565743	19	1.018	LARGE-GAIN	FOCAL	9	"OR51B5,OR51B6,OR51I1,OR51I2,OR51M1,OR51Q1,OR52D1,UBQLN3,UBQLNL"
TCGA.AA.A00N.01A	11	5730241	5905491	9	0.8949	LARGE-GAIN	FOCAL	8	"OR52E6,OR52E8,OR52N1,OR52N2,OR52N4,OR52N5,OR56B1,TRIM22"
TCGA.AA.A00N.01A	11	6047931	6240140	13	0.9779	LARGE-GAIN	FOCAL	6	"C11orf42,FAM160A2,OR52B2,OR52W1,OR56A1,OR56B4"
TCGA.AA.A010.01A	11	6281107	6411787	8	1.4485	LARGE-GAIN	FOCAL	3	"CCKBR,PRKCDBP,SMPD1"
TCGA.AG.A01W.01A	11	6454881	6457725	6	0.8574	LARGE-GAIN	FOCAL	1	HPX
TCGA.AG.A01W.01A	11	6599574	6611201	14	0.8441	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	11	6621364	6661851	35	1.1911	LARGE-GAIN	FOCAL	5	"DCHS1,ILK,RRP8,TAF10,TPP1"
TCGA.AG.A015.01A	11	6643005	6652296	9	0.7789	LARGE-GAIN	FOCAL	1	DCHS1
TCGA.AA.A010.01A	11	6953472	6976914	5	1.056	LARGE-GAIN	FOCAL	1	ZNF215
TCGA.AA.3509.01A	11	6976914	7023893	3	1.2268	LARGE-GAIN	FOCAL	2	"ZNF214,ZNF215"
TCGA.DY.A1DC	11	7077520	7096031	11	0.7647	LARGE-GAIN	FOCAL	1	NLRP14
TCGA.AZ.4684.01A	11	7078877	7083527	4	1.4969	LARGE-GAIN	FOCAL	1	NLRP14
TCGA.AA.3509.01A	11	7079474	7091510	4	1.4435	LARGE-GAIN	FOCAL	1	NLRP14
TCGA.AG.3575	11	7851908	7879175	11	1.0167	LARGE-GAIN	FOCAL	0	None
TCGA.G4.6314	11	8388702	8504618	43	1.7075	LARGE-GAIN	FOCAL	1	STK33
TCGA.AA.A00N.01A	11	8456986	8673265	29	0.8238	LARGE-GAIN	FOCAL	2	"STK33,TRIM66"
TCGA.G4.6314	11	8504853	8599717	17	2.2926	LARGE-GAIN	FOCAL	1	STK33
TCGA.G4.6314	11	8608635	9055969	149	1.8392	LARGE-GAIN	FOCAL	10	"AKIP1,ASCL3,C11orf16,NRIP3,RPL27A,SCUBE2,ST5,STK33,TMEM9B,TRIM66"
TCGA.AG.3906.01A	11	8983583	9009637	6	0.8584	LARGE-GAIN	FOCAL	2	"NRIP3,TMEM9B"
TCGA.AA.A00N.01A	11	9047221	9286457	42	0.698	LARGE-GAIN	FOCAL	2	"DENND5A,SCUBE2"
TCGA.AG.3909.01A	11	9048894	9229092	40	0.7269	LARGE-GAIN	FOCAL	2	"DENND5A,SCUBE2"
TCGA.A6.A56B	11	9124680	9389874	45	1.3505	LARGE-GAIN	FOCAL	2	"DENND5A,TMEM41B"
TCGA.AA.A010.01A	11	9321094	9424781	4	1.3734	LARGE-GAIN	FOCAL	2	"IPO7,TMEM41B"
TCGA.DM.A28M.01A	11	9597434	9598642	3	1.1705	LARGE-GAIN	FOCAL	1	WEE1
TCGA.AA.A00N.01A	11	10500066	10526044	12	0.9475	LARGE-GAIN	FOCAL	1	AMPD3
TCGA.AG.A015.01A	11	10522968	10527258	4	0.7109	LARGE-GAIN	FOCAL	1	AMPD3
TCGA.AA.A00N.01A	11	10585440	10772881	23	0.8518	LARGE-GAIN	FOCAL	3	"CTR9,LYVE1,MRVI1"
TCGA.AA.A00N.01A	11	10874373	11470241	12	1.2625	LARGE-GAIN	FOCAL	3	"CSNK2A3,GALNT18,ZBED5"
TCGA.AG.3909.01A	11	11292654	11470241	10	1.1413	LARGE-GAIN	FOCAL	2	"CSNK2A3,GALNT18"
TCGA.CK.5914.01A	11	11292654	11470241	10	1.2641	LARGE-GAIN	FOCAL	2	"CSNK2A3,GALNT18"
TCGA.AA.3509.01A	11	11919116	11974241	18	1.2944	LARGE-GAIN	FOCAL	1	USP47
TCGA.AZ.4684.01A	11	11919116	11974241	18	1.4086	LARGE-GAIN	FOCAL	1	USP47
TCGA.DM.A28M.01A	11	11941649	11950949	3	1.9775	LARGE-GAIN	FOCAL	1	USP47
TCGA.AA.A00A.01A	11	13375814	13381842	4	0.7059	LARGE-GAIN	FOCAL	1	ARNTL
TCGA.AA.3509.01A	11	13408116	13750112	19	1.0073	LARGE-GAIN	FOCAL	4	"ARNTL,BTBD10,FAR1,PTH"
TCGA.AZ.4684.01A	11	13408116	13750112	19	1.1976	LARGE-GAIN	FOCAL	4	"ARNTL,BTBD10,FAR1,PTH"
TCGA.DM.A28M.01A	11	13749056	13750112	2	1.9409	LARGE-GAIN	FOCAL	1	FAR1
TCGA.A6.3808.01A	11	14541746	16892597	80	0.7517	LARGE-GAIN	FOCAL	10	"C11orf58,CALCA,CALCB,CYP2R1,INSC,LOC102724957,PDE3B,PLEKHA7,PSMA1,SOX6"
TCGA.DM.A28M.01A	11	14793441	14825463	4	0.9933	LARGE-GAIN	FOCAL	1	PDE3B
TCGA.AZ.4684.01A	11	14807956	14907271	17	1.0275	LARGE-GAIN	FOCAL	2	"CYP2R1,PDE3B"
TCGA.DM.A28M.01A	11	14900630	14907271	3	0.9911	LARGE-GAIN	FOCAL	1	CYP2R1
TCGA.AA.A010.01A	11	14913520	16010506	24	1.0102	LARGE-GAIN	FOCAL	6	"CALCA,CALCB,CYP2R1,INSC,LOC102724957,SOX6"
TCGA.AA.A01Q.01A	11	15096221	15261931	7	0.7261	LARGE-GAIN	FOCAL	2	"CALCB,INSC"
TCGA.AA.A00N.01A	11	15096221	16071251	21	1.476	LARGE-GAIN	FOCAL	4	"CALCB,INSC,LOC102724957,SOX6"
TCGA.AG.3909.01A	11	15170655	16036466	16	0.8681	LARGE-GAIN	FOCAL	3	"INSC,LOC102724957,SOX6"
TCGA.AA.A00N.01A	11	16077250	16816025	19	0.8032	LARGE-GAIN	FOCAL	3	"C11orf58,PLEKHA7,SOX6"
TCGA.AG.A01Y	11	16148798	16659347	92	0.7064	LARGE-GAIN	FOCAL	1	SOX6
TCGA.AA.A010.01A	11	16760261	16847625	17	0.8582	LARGE-GAIN	FOCAL	2	"C11orf58,PLEKHA7"
TCGA.AA.A00N.01A	11	16838327	16877311	7	0.9739	LARGE-GAIN	FOCAL	1	PLEKHA7
TCGA.AG.3909.01A	11	16838327	16877311	7	0.6882	LARGE-GAIN	FOCAL	1	PLEKHA7
TCGA.AA.A010.01A	11	17098674	17157981	23	0.784	LARGE-GAIN	FOCAL	2	"PIK3C2A,RPS13"
TCGA.AG.3906.01A	11	17408426	17432016	16	0.8287	LARGE-GAIN	FOCAL	2	"ABCC8,KCNJ11"
TCGA.AG.3909.01A	11	17414520	17484938	32	0.8699	LARGE-GAIN	FOCAL	1	ABCC8
TCGA.AA.A00N.01A	11	17436770	17464678	10	1.2141	LARGE-GAIN	FOCAL	1	ABCC8
TCGA.AA.A00N.01A	11	17631173	17667070	20	0.8824	LARGE-GAIN	FOCAL	1	OTOG
TCGA.RU.A8FL	11	18951136	18960114	6	0.9521	LARGE-GAIN	FOCAL	1	MRGPRX1
TCGA.A6.6653	11	18951136	18972151	7	0.681	LARGE-GAIN	FOCAL	1	MRGPRX1
TCGA.AZ.4684.01A	11	19138711	19185788	12	1.3311	LARGE-GAIN	FOCAL	1	ZDHHC13
TCGA.AA.3509.01A	11	19164474	19191946	14	1.0356	LARGE-GAIN	FOCAL	1	ZDHHC13
TCGA.CK.5914.01A	11	19169094	19213832	19	0.7015	LARGE-GAIN	FOCAL	2	"CSRP3,ZDHHC13"
TCGA.DM.A28M.01A	11	19170696	19174069	4	0.9071	LARGE-GAIN	FOCAL	1	ZDHHC13
TCGA.AA.A01V	11	19578900	19579426	4	1.105	LARGE-GAIN	FOCAL	1	NAV2
TCGA.AA.A00N.01A	11	19901367	20139638	38	1.0677	LARGE-GAIN	FOCAL	1	NAV2
TCGA.AG.3909.01A	11	19913931	20139638	35	0.7989	LARGE-GAIN	FOCAL	1	NAV2
TCGA.AA.A010.01A	11	19954671	20072770	13	0.6908	LARGE-GAIN	FOCAL	1	NAV2
TCGA.CK.5914.01A	11	19970287	20139638	31	0.9251	LARGE-GAIN	FOCAL	1	NAV2
TCGA.AA.A010.01A	11	20124784	20181463	10	1.2823	LARGE-GAIN	FOCAL	2	"DBX1,NAV2"
TCGA.AA.A00N.01A	11	20448260	20529823	7	0.864	LARGE-GAIN	FOCAL	1	PRMT3
TCGA.AA.3930.01A	11	20639251	20649479	3	0.8132	LARGE-GAIN	FOCAL	1	SLC6A5
TCGA.AG.3906.01A	11	20691211	20699441	2	1.2083	LARGE-GAIN	FOCAL	1	NELL1
TCGA.CK.5914.01A	11	20939665	22284450	31	0.7164	LARGE-GAIN	FOCAL	2	"ANO5,NELL1"
TCGA.AA.A00N.01A	11	22248808	22647335	29	0.8937	LARGE-GAIN	FOCAL	3	"ANO5,FANCF,SLC17A6"
TCGA.DY.A1DC	11	24499697	24513820	15	0.7844	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	25071544	27362206	54	0.7543	LARGE-GAIN	FOCAL	7	"ANO3,BBOX1,CCDC34,FIBIN,LUZP2,MUC15,SLC5A12"
TCGA.DY.A1DC	11	25252514	25282497	8	1.1045	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	11	26763015	26823873	22	0.8357	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3819	11	28965159	28972435	3	1.1085	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6930	11	31167538	31173088	3	1.2581	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	11	31477755	31625267	8	0.6875	LARGE-GAIN	FOCAL	2	"ELP4,IMMP1L"
TCGA.AA.A010.01A	11	32605355	32624305	12	1.0365	LARGE-GAIN	FOCAL	2	"CCDC73,EIF3M"
TCGA.AA.3509.01A	11	32623241	32663486	8	0.9295	LARGE-GAIN	FOCAL	2	"CCDC73,EIF3M"
TCGA.AZ.4684.01A	11	32623241	32663486	8	1.0946	LARGE-GAIN	FOCAL	2	"CCDC73,EIF3M"
TCGA.AA.A00N.01A	11	32975356	32987799	5	0.7846	LARGE-GAIN	FOCAL	1	QSER1
TCGA.AG.3909.01A	11	33563964	33640042	15	0.9395	LARGE-GAIN	FOCAL	1	KIAA1549L
TCGA.AA.A00N.01A	11	33563964	33689372	20	1.1659	LARGE-GAIN	FOCAL	1	KIAA1549L
TCGA.AA.A010.01A	11	33563964	33689372	20	0.7229	LARGE-GAIN	FOCAL	1	KIAA1549L
TCGA.AG.3909.01A	11	34133572	34163217	19	0.711	LARGE-GAIN	FOCAL	1	NAT10
TCGA.CK.5914.01A	11	34135221	34162596	17	0.8226	LARGE-GAIN	FOCAL	1	NAT10
TCGA.AA.A00J.01A	11	34152878	34153639	2	4.4006	LARGE-GAIN	FOCAL	1	NAT10
TCGA.AA.A00D.01A	11	34952904	34981950	4	0.6929	LARGE-GAIN	FOCAL	1	PDHX
TCGA.AG.3909.01A	11	35747425	36483842	21	0.7505	LARGE-GAIN	FOCAL	4	"COMMD9,LDLRAD3,PRR5L,TRIM44"
TCGA.A6.A56B	11	36669981	43929498	2331	1.0473	LARGE-GAIN	FOCAL	6	"ALKBH3,API5,C11orf74,HSD17B12,LRRC4C,TTC17"
TCGA.D5.6534	11	38198516	39850366	418	0.9056	LARGE-GAIN	FOCAL	0	None
TCGA.CM.6170	11	41159118	41168082	3	1.0565	LARGE-GAIN	FOCAL	1	LRRC4C
TCGA.AG.A01W.01A	11	45159842	45161007	3	0.8063	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	11	45876176	45883717	7	0.8024	LARGE-GAIN	FOCAL	1	CRY2
TCGA.AG.3906.01A	11	45919588	45928357	10	0.8418	LARGE-GAIN	FOCAL	2	"C11orf94,MAPK8IP1"
TCGA.CK.5914.01A	11	45967339	46105656	12	0.7073	LARGE-GAIN	FOCAL	1	PHF21A
TCGA.AA.A00N.01A	11	45986818	46105656	7	0.9286	LARGE-GAIN	FOCAL	1	PHF21A
TCGA.AM.5820	11	46332892	46406856	6	0.8291	LARGE-GAIN	FOCAL	4	"CHRM4,CREB3L1,DGKZ,MDK"
TCGA.AG.3906.01A	11	46406668	46430015	3	1.1883	LARGE-GAIN	FOCAL	2	"AMBRA1,CHRM4"
TCGA.AA.A010.01A	11	46529694	46637096	12	0.9143	LARGE-GAIN	FOCAL	2	"AMBRA1,HARBI1"
TCGA.A6.A56B	11	46561300	46812226	22	1.0248	LARGE-GAIN	FOCAL	7	"AMBRA1,ARHGAP1,ATG13,CKAP5,F2,HARBI1,ZNF408"
TCGA.AA.A010.01A	11	46700548	46750940	26	0.9804	LARGE-GAIN	FOCAL	3	"ARHGAP1,F2,ZNF408"
TCGA.AA.A02K.01A	11	46722548	46724189	3	0.7021	LARGE-GAIN	FOCAL	1	ZNF408
TCGA.CK.5914.01A	11	46889480	46910915	14	0.7019	LARGE-GAIN	FOCAL	1	LRP4
TCGA.AG.3906.01A	11	46905385	46924303	17	0.9361	LARGE-GAIN	FOCAL	1	LRP4
TCGA.AG.3909.01A	11	47254316	47282755	16	0.7261	LARGE-GAIN	FOCAL	3	"ACP2,DDB2,NR1H3"
TCGA.AA.A00N.01A	11	47354090	47360049	8	0.7508	LARGE-GAIN	FOCAL	1	MYBPC3
TCGA.AG.3906.01A	11	47363494	47447372	19	0.7812	LARGE-GAIN	FOCAL	4	"MYBPC3,PSMC3,SLC39A13,SPI1"
TCGA.A6.3808.01A	11	47381407	47399785	3	3.3925	LARGE-GAIN	FOCAL	1	SPI1
TCGA.AA.A00N.01A	11	47447692	47587188	20	0.9004	LARGE-GAIN	FOCAL	4	"CELF1,PSMC3,PTPMT1,RAPSN"
TCGA.CK.5914.01A	11	47493735	47510337	12	0.8813	LARGE-GAIN	FOCAL	1	CELF1
TCGA.AG.3891.01A	11	47594450	47605817	8	0.7699	LARGE-GAIN	FOCAL	3	"KBTBD4,NDUFS3,PTPMT1"
TCGA.AG.3906.01A	11	47602025	47644219	6	1.1859	LARGE-GAIN	FOCAL	4	"C1QTNF4,FAM180B,MTCH2,NDUFS3"
TCGA.AG.3909.01A	11	48131518	48185880	21	0.7253	LARGE-GAIN	FOCAL	1	PTPRJ
TCGA.DY.A1DC	11	48654152	48891876	9	1.2899	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	11	49229803	55110705	11	0.8679	LARGE-GAIN	FOCAL	7	"FOLH1,OR4A16,OR4A5,OR4C12,OR4C13,OR4C46,TRIM48"
TCGA.DY.A1DC	11	50476267	51195050	7	1.5209	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	11	54835622	54934709	6	1.5164	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	11	55652993	55655560	3	3.3032	LARGE-GAIN	FOCAL	1	TRIM51
TCGA.AA.3862.01A	11	55652993	55656365	4	3.0146	LARGE-GAIN	FOCAL	1	TRIM51
TCGA.AD.6901	11	56000470	56174857	45	1.2295	LARGE-GAIN	FOCAL	9	"OR5T1,OR5T2,OR5T3,OR8H1,OR8J1,OR8K1,OR8K3,OR8U1,OR8U8"
TCGA.AD.6901	11	56175670	56334456	49	1.7257	LARGE-GAIN	FOCAL	5	"OR5M11,OR5M3,OR5M8,OR5M9,OR5R1"
TCGA.DY.A1DC	11	56217980	56242260	9	0.9639	LARGE-GAIN	FOCAL	2	"OR5M3,OR5M9"
TCGA.AA.3862.01A	11	56229918	56379980	6	1.8131	LARGE-GAIN	FOCAL	5	"OR5M10,OR5M11,OR5M3,OR5M8,OR5M9"
TCGA.AG.A020	11	56242159	56242353	4	1.111	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	11	56949408	57004239	5	1.4075	LARGE-GAIN	FOCAL	2	"APLNR,LRRC55"
TCGA.A6.3808.01A	11	57067948	57075852	6	2.6339	LARGE-GAIN	FOCAL	1	TNKS1BP1
TCGA.AA.A00J.01A	11	57087524	57157298	36	0.7204	LARGE-GAIN	FOCAL	5	"P2RX3,PRG2,PRG3,SSRP1,TNKS1BP1"
TCGA.AA.A010.01A	11	57518506	57569168	6	0.9898	LARGE-GAIN	FOCAL	2	"BTBD18,CTNND1"
TCGA.AA.A00N.01A	11	57558900	58125571	31	0.8251	LARGE-GAIN	FOCAL	9	"CTNND1,OR10Q1,OR10W1,OR1S1,OR1S2,OR6Q1,OR9I1,OR9Q1,OR9Q2"
TCGA.A6.3808.01A	11	58346716	58715292	26	1.2703	LARGE-GAIN	FOCAL	5	"CNTF,GLYAT,GLYATL1,GLYATL2,ZFP91"
TCGA.AA.A00F.01A	11	58877083	58919756	5	0.7128	LARGE-GAIN	FOCAL	2	"FAM111A,FAM111B"
TCGA.AG.A01Y	11	58893760	58897183	3	1.2958	LARGE-GAIN	FOCAL	1	FAM111B
TCGA.AA.A00N.01A	11	58959534	59282937	14	1.0654	LARGE-GAIN	FOCAL	9	"DTX4,MPEG1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1"
TCGA.AG.3906.01A	11	59367942	59421404	16	0.8177	LARGE-GAIN	FOCAL	2	"OSBP,PATL1"
TCGA.AA.A00N.01A	11	59578035	59631343	17	0.8719	LARGE-GAIN	FOCAL	3	"GIF,MRPL16,TCN1"
TCGA.AA.A00N.01A	11	59860861	60182862	30	0.8021	LARGE-GAIN	FOCAL	6	"MS4A14,MS4A2,MS4A4A,MS4A6A,MS4A6E,MS4A7"
TCGA.AA.A02H.01A	11	59939580	60048068	7	0.7421	LARGE-GAIN	FOCAL	2	"MS4A4A,MS4A6A"
TCGA.AA.A010.01A	11	60059670	60107283	9	0.7493	LARGE-GAIN	FOCAL	2	"MS4A4A,MS4A6E"
TCGA.AA.A02H.01A	11	60154119	60182862	9	0.7399	LARGE-GAIN	FOCAL	2	"MS4A14,MS4A7"
TCGA.AG.3906.01A	11	60559689	60617648	9	0.8698	LARGE-GAIN	FOCAL	2	"CCDC86,MS4A10"
TCGA.DC.6158	11	60618133	60941494	107	1.0822	LARGE-GAIN	FOCAL	10	"CCDC86,CD5,CD6,PRPF19,PTGDR2,SLC15A3,TMEM109,TMEM132A,VPS37C,ZP1"
TCGA.AG.3906.01A	11	60687114	60713973	16	1.1883	LARGE-GAIN	FOCAL	3	"SLC15A3,TMEM109,TMEM132A"
TCGA.AG.A00Y.01A	11	60696102	60711110	10	2.7712	LARGE-GAIN	FOCAL	2	"SLC15A3,TMEM132A"
TCGA.AM.5820	11	60696927	60699994	6	1.0721	LARGE-GAIN	FOCAL	1	TMEM132A
TCGA.AG.3909.01A	11	60970968	61031933	8	0.9933	LARGE-GAIN	FOCAL	4	"PGA3,PGA4,PGA5,VWCE"
TCGA.CK.5914.01A	11	60970968	61031933	11	0.8306	LARGE-GAIN	FOCAL	4	"PGA3,PGA4,PGA5,VWCE"
TCGA.AA.3509.01A	11	60978521	60997364	2	1.5215	LARGE-GAIN	FOCAL	2	"PGA3,PGA4"
TCGA.AG.3909.01A	11	61213361	61257906	11	1.1138	LARGE-GAIN	FOCAL	2	"PPP1R32,SDHAF2"
TCGA.AA.A00N.01A	11	61249235	61257906	10	0.9414	LARGE-GAIN	FOCAL	1	PPP1R32
TCGA.DT.5265	11	61288356	61396007	16	0.6829	LARGE-GAIN	FOCAL	1	SYT7
TCGA.A6.3808.01A	11	61291252	61495578	12	1.3992	LARGE-GAIN	FOCAL	2	"DAGLA,SYT7"
TCGA.AA.A010.01A	11	61582575	61595843	3	0.8526	LARGE-GAIN	FOCAL	2	"FADS1,FADS2"
TCGA.AG.3891.01A	11	61726913	61732792	6	0.7778	LARGE-GAIN	FOCAL	2	"BEST1,FTH1"
TCGA.AA.A00N.01A	11	61957687	62037620	10	0.8812	LARGE-GAIN	FOCAL	3	"SCGB1D1,SCGB1D2,SCGB2A1"
TCGA.AG.3906.01A	11	62472786	62505746	18	0.6928	LARGE-GAIN	FOCAL	4	"BSCL2,GNG3,HNRNPUL2,TTC9C"
TCGA.AA.A01Q.01A	11	62519583	62529027	3	0.7141	LARGE-GAIN	FOCAL	2	"POLR2G,ZBTB3"
TCGA.AG.A00Y.01A	11	62530297	62533672	4	3.4284	LARGE-GAIN	FOCAL	1	POLR2G
TCGA.AG.A00Y.01A	11	62543239	62546319	4	1.2062	LARGE-GAIN	FOCAL	1	TAF6L
TCGA.AG.A00Y.01A	11	62562345	62565933	4	1.378	LARGE-GAIN	FOCAL	1	NXF1
TCGA.AA.A010.01A	11	62598449	62850666	36	0.8282	LARGE-GAIN	FOCAL	7	"CHRM1,SLC22A24,SLC22A6,SLC22A8,SLC3A2,STX5,WDR74"
TCGA.AA.A00N.01A	11	62677161	63283697	67	0.789	LARGE-GAIN	FOCAL	9	"CHRM1,HRASLS5,LGALS12,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9"
TCGA.AG.3909.01A	11	62744218	62782066	16	0.9477	LARGE-GAIN	FOCAL	2	"SLC22A6,SLC22A8"
TCGA.AA.A017.01A	11	62760682	63173947	34	0.8046	LARGE-GAIN	FOCAL	5	"SLC22A10,SLC22A24,SLC22A25,SLC22A8,SLC22A9"
TCGA.AG.A025.01A	11	62760682	63276260	46	0.7201	LARGE-GAIN	FOCAL	7	"HRASLS5,LGALS12,SLC22A10,SLC22A24,SLC22A25,SLC22A8,SLC22A9"
TCGA.AZ.4684.01A	11	62848354	63176096	33	0.6966	LARGE-GAIN	FOCAL	4	"SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AA.A02H.01A	11	62850666	63058965	14	1.0167	LARGE-GAIN	FOCAL	3	"SLC22A10,SLC22A24,SLC22A25"
TCGA.AA.A01C.01A	11	62910802	63177206	27	0.7566	LARGE-GAIN	FOCAL	4	"SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AG.A01J.01A	11	62910802	63177206	27	0.8626	LARGE-GAIN	FOCAL	4	"SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AA.A02H.01A	11	63069753	63175535	11	0.9153	LARGE-GAIN	FOCAL	2	"SLC22A10,SLC22A9"
TCGA.AG.A01W.01A	11	63432232	63439534	6	0.7485	LARGE-GAIN	FOCAL	1	ATL3
TCGA.AG.3906.01A	11	63517426	63594353	11	1.2004	LARGE-GAIN	FOCAL	3	"C11orf84,C11orf95,RTN3"
TCGA.DM.A1D0	11	63651035	63759140	26	1.0235	LARGE-GAIN	FOCAL	5	"COX8A,MARK2,NAA40,OTUB1,RCOR2"
TCGA.AG.3906.01A	11	63667305	63682195	12	1.3122	LARGE-GAIN	FOCAL	2	"MARK2,RCOR2"
TCGA.AG.A008.01A	11	63990473	63991585	4	0.6804	LARGE-GAIN	FOCAL	2	"FERMT3,TRPT1"
TCGA.AG.3906.01A	11	63990473	63996702	8	0.8282	LARGE-GAIN	FOCAL	3	"FERMT3,NUDT22,TRPT1"
TCGA.AG.3906.01A	11	63999884	64011234	6	1.9353	LARGE-GAIN	FOCAL	3	"DNAJC4,FKBP2,VEGFB"
TCGA.AG.3906.01A	11	64012164	64108030	29	0.8372	LARGE-GAIN	FOCAL	10	"BAD,CCDC88B,ESRRA,GPR137,KCNK4,PLCB3,PPP1R14B,PRDX5,TEX40,TRMT112"
TCGA.DC.6158	11	64198036	64297562	28	1.2732	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	11	64390228	64540843	46	0.8239	LARGE-GAIN	FOCAL	4	"NRXN2,PYGM,RASGRP2,SF1"
TCGA.AG.3909.01A	11	64419500	64457813	8	0.6803	LARGE-GAIN	FOCAL	1	NRXN2
TCGA.AG.3891.01A	11	64535037	64575312	23	0.8981	LARGE-GAIN	FOCAL	3	"MAP4K2,MEN1,SF1"
TCGA.AG.3906.01A	11	64543870	64577105	16	1.3775	LARGE-GAIN	FOCAL	3	"MAP4K2,MEN1,SF1"
TCGA.AA.A00N.01A	11	64756552	64764271	3	0.8338	LARGE-GAIN	FOCAL	1	BATF2
TCGA.AG.3906.01A	11	65298059	65360474	24	1.4079	LARGE-GAIN	FOCAL	6	"EHBP1L1,FAM89B,KCNK7,LTBP3,SCYL1,SSSCA1"
TCGA.AG.3891.01A	11	65347344	65360474	8	1.0089	LARGE-GAIN	FOCAL	2	"EHBP1L1,KCNK7"
TCGA.AG.3906.01A	11	65408375	65429121	12	1.3823	LARGE-GAIN	FOCAL	2	"RELA,SIPA1"
TCGA.AG.3891.01A	11	65412379	65423096	7	1.1519	LARGE-GAIN	FOCAL	2	"RELA,SIPA1"
TCGA.AA.A010.01A	11	65479690	65488008	9	0.9017	LARGE-GAIN	FOCAL	2	"KAT5,RNASEH2C"
TCGA.DC.6158	11	65583065	65649001	12	1.1846	LARGE-GAIN	FOCAL	5	"CFL1,CTSW,EFEMP2,MUS81,SNX32"
TCGA.AG.3906.01A	11	65630846	65688750	24	1.0498	LARGE-GAIN	FOCAL	8	"C11orf68,CCDC85B,CTSW,DRAP1,EFEMP2,FIBP,FOSL1,MUS81"
TCGA.AG.3906.01A	11	65792597	65836099	20	1.0458	LARGE-GAIN	FOCAL	3	"CATSPER1,GAL3ST3,SF3B2"
TCGA.AG.3906.01A	11	66030278	66033887	6	0.7883	LARGE-GAIN	FOCAL	1	KLC2
TCGA.AG.3891.01A	11	66031789	66061793	14	0.9214	LARGE-GAIN	FOCAL	5	"CNIH2,KLC2,RAB1B,TMEM151A,YIF1A"
TCGA.AG.3906.01A	11	66034297	66061793	9	1.5584	LARGE-GAIN	FOCAL	5	"CNIH2,KLC2,RAB1B,TMEM151A,YIF1A"
TCGA.AG.3906.01A	11	66235562	66240695	5	1.1813	LARGE-GAIN	FOCAL	1	PELI3
TCGA.AA.A00Q.01A	11	66318658	66330220	7	0.6989	LARGE-GAIN	FOCAL	1	ACTN3
TCGA.AG.3906.01A	11	66357900	66367903	5	0.8421	LARGE-GAIN	FOCAL	2	"CCDC87,CCS"
TCGA.AG.A00C.01A	11	66476333	66555584	10	0.7458	LARGE-GAIN	FOCAL	2	"C11orf80,SPTBN2"
TCGA.AA.A00N.01A	11	67120113	67120721	3	0.8873	LARGE-GAIN	FOCAL	1	POLD4
TCGA.DM.A1D0	11	67457094	67939572	53	0.8771	LARGE-GAIN	FOCAL	6	"ALDH3B1,CHKA,NDUFS8,SUV420H1,TCIRG1,UNC93B1"
TCGA.D5.6898	11	68308839	68388566	13	0.7337	LARGE-GAIN	FOCAL	1	PPP6R3
TCGA.AA.A010.01A	11	68321571	68452345	21	0.804	LARGE-GAIN	FOCAL	2	"GAL,PPP6R3"
TCGA.AG.3909.01A	11	68370782	68382021	5	0.6831	LARGE-GAIN	FOCAL	1	PPP6R3
TCGA.DT.5265	11	68605827	68827716	55	1.9972	LARGE-GAIN	FOCAL	6	"CPT1A,IGHMBP2,MRGPRD,MRGPRF,MRPL21,TPCN2"
TCGA.AG.4009.01A	11	68658730	68663932	4	3.5145	LARGE-GAIN	FOCAL	1	MRPL21
TCGA.A6.3808.01A	11	68777247	68839343	11	1.7012	LARGE-GAIN	FOCAL	2	"MRGPRF,TPCN2"
TCGA.DT.5265	11	68832729	69942323	382	1.5198	LARGE-GAIN	FOCAL	8	"ANO1,CCND1,FGF19,FGF3,FGF4,MYEOV,ORAOV1,TPCN2"
TCGA.AG.4009.01A	11	69062785	69951771	18	3.4003	LARGE-GAIN	FOCAL	7	"ANO1,CCND1,FGF19,FGF3,FGF4,MYEOV,ORAOV1"
TCGA.DC.6158	11	69669715	69699979	16	1.3591	LARGE-GAIN	FOCAL	0	None
TCGA.DT.5265	11	69946970	70276817	79	1.069	LARGE-GAIN	FOCAL	4	"ANO1,CTTN,FADD,PPFIA1"
TCGA.AG.4009.01A	11	69954398	69998460	8	4.5249	LARGE-GAIN	FOCAL	1	ANO1
TCGA.AA.3861.01A	11	70033807	70183405	15	0.8217	LARGE-GAIN	FOCAL	3	"ANO1,FADD,PPFIA1"
TCGA.AG.4009.01A	11	70052197	70176232	9	4.0694	LARGE-GAIN	FOCAL	2	"FADD,PPFIA1"
TCGA.DC.6158	11	70165222	70295896	29	1.2736	LARGE-GAIN	FOCAL	2	"CTTN,PPFIA1"
TCGA.AA.3930.01A	11	70265835	70267529	3	1.8876	LARGE-GAIN	FOCAL	1	CTTN
TCGA.DT.5265	11	70295896	70397068	27	1.4408	LARGE-GAIN	FOCAL	1	SHANK2
TCGA.DT.5265	11	70425842	70592232	54	1.3196	LARGE-GAIN	FOCAL	1	SHANK2
TCGA.DC.6158	11	70807772	70877403	17	1.0577	LARGE-GAIN	FOCAL	1	SHANK2
TCGA.DT.5265	11	70931323	71107366	88	0.8534	LARGE-GAIN	FOCAL	1	SHANK2
TCGA.DC.6158	11	71210022	71290739	35	0.7651	LARGE-GAIN	FOCAL	5	"KRTAP5-10,KRTAP5-7,KRTAP5-8,KRTAP5-9,NADSYN1"
TCGA.AA.3861.01A	11	71259708	71548396	11	1.2423	LARGE-GAIN	FOCAL	6	"DEFB108B,FAM86C1,KRTAP5-10,KRTAP5-11,KRTAP5-9,ZNF705E"
TCGA.A6.3808.01A	11	71640059	71671758	3	2.0104	LARGE-GAIN	FOCAL	1	RNF121
TCGA.AA.A010.01A	11	71640059	71850609	56	0.7109	LARGE-GAIN	FOCAL	7	"ANAPC15,FOLR3,IL18BP,LAMTOR1,LRTOMT,NUMA1,RNF121"
TCGA.AA.3930.01A	11	71729190	71740197	8	1.0684	LARGE-GAIN	FOCAL	1	NUMA1
TCGA.AA.A00N.01A	11	71846990	71906268	6	1.314	LARGE-GAIN	FOCAL	2	"FOLR1,FOLR3"
TCGA.AG.3909.01A	11	71846990	71906268	6	1.2907	LARGE-GAIN	FOCAL	2	"FOLR1,FOLR3"
TCGA.CK.5914.01A	11	71846990	71906268	6	1.3423	LARGE-GAIN	FOCAL	2	"FOLR1,FOLR3"
TCGA.DT.5265	11	71849441	71857372	4	1.1639	LARGE-GAIN	FOCAL	1	FOLR3
TCGA.AG.3906.01A	11	71906268	71949066	18	1.225	LARGE-GAIN	FOCAL	3	"FOLR1,FOLR2,INPPL1"
TCGA.AG.A015.01A	11	71940087	71949066	12	0.7144	LARGE-GAIN	FOCAL	1	INPPL1
TCGA.AA.A00N.01A	11	71954822	72145094	18	1.1847	LARGE-GAIN	FOCAL	2	"CLPB,PHOX2A"
TCGA.AA.A010.01A	11	72004363	72145094	16	0.8692	LARGE-GAIN	FOCAL	1	CLPB
TCGA.AG.3909.01A	11	72004363	72145094	17	0.8702	LARGE-GAIN	FOCAL	1	CLPB
TCGA.A6.3808.01A	11	72019513	72288400	11	1.4203	LARGE-GAIN	FOCAL	2	"CLPB,PDE2A"
TCGA.AG.4009.01A	11	72385115	72424165	24	0.7574	LARGE-GAIN	FOCAL	2	"ARAP1,PDE2A"
TCGA.AA.A010.01A	11	72598473	72711998	9	0.8561	LARGE-GAIN	FOCAL	1	FCHSD2
TCGA.AG.3891.01A	11	73063837	73072071	9	0.7169	LARGE-GAIN	FOCAL	1	ARHGEF17
TCGA.CK.5914.01A	11	73118527	73179387	6	1.0501	LARGE-GAIN	FOCAL	1	FAM168A
TCGA.AA.A00N.01A	11	73118527	73372459	14	0.703	LARGE-GAIN	FOCAL	2	"FAM168A,PLEKHB1"
TCGA.DC.6158	11	73219117	73219906	3	0.7919	LARGE-GAIN	FOCAL	1	FAM168A
TCGA.AA.A010.01A	11	73359998	73372459	7	1.6541	LARGE-GAIN	FOCAL	1	PLEKHB1
TCGA.AA.A00N.01A	11	73555825	73587989	6	0.7478	LARGE-GAIN	FOCAL	3	"COA4,MRPL48,PAAF1"
TCGA.AA.A00N.01A	11	73714857	73820028	26	0.8903	LARGE-GAIN	FOCAL	2	"C2CD3,UCP3"
TCGA.DC.6158	11	73745394	74011952	48	1.0847	LARGE-GAIN	FOCAL	3	"C2CD3,P4HA3,PPME1"
TCGA.AA.A00N.01A	11	73872422	73997236	25	0.8324	LARGE-GAIN	FOCAL	3	"C2CD3,P4HA3,PPME1"
TCGA.CK.5914.01A	11	73978231	73997236	8	1.2038	LARGE-GAIN	FOCAL	1	P4HA3
TCGA.AA.A00N.01A	11	74303632	75000968	85	0.8078	LARGE-GAIN	FOCAL	10	"ARRB1,CHRDL2,NEU3,OR2AT4,POLD3,RNF169,SLCO2B1,SPCS2,TPBGL,XRRA1"
TCGA.AG.3909.01A	11	74408200	74424389	8	0.9415	LARGE-GAIN	FOCAL	1	CHRDL2
TCGA.CK.5914.01A	11	74862336	74979882	17	0.7391	LARGE-GAIN	FOCAL	3	"ARRB1,SLCO2B1,TPBGL"
TCGA.AG.3909.01A	11	74862336	75000968	29	0.8129	LARGE-GAIN	FOCAL	3	"ARRB1,SLCO2B1,TPBGL"
TCGA.AG.3909.01A	11	75316832	75501186	12	0.7798	LARGE-GAIN	FOCAL	3	"DGAT2,MAP6,MOGAT2"
TCGA.DC.6158	11	75411130	75535521	52	0.7685	LARGE-GAIN	FOCAL	3	"DGAT2,MOGAT2,UVRAG"
TCGA.AA.A00N.01A	11	75428882	75442128	6	1.5364	LARGE-GAIN	FOCAL	1	MOGAT2
TCGA.DC.6158	11	75733417	75832921	11	0.6859	LARGE-GAIN	FOCAL	1	UVRAG
TCGA.AA.3861.01A	11	75907508	76063486	5	2.752	LARGE-GAIN	FOCAL	2	"PRKRIR,WNT11"
TCGA.AA.3862.01A	11	75907508	76063486	5	2.8931	LARGE-GAIN	FOCAL	2	"PRKRIR,WNT11"
TCGA.AA.3509.01A	11	76237459	76239265	2	1.863	LARGE-GAIN	FOCAL	1	C11orf30
TCGA.AA.A00N.01A	11	76237459	76260949	9	1.2918	LARGE-GAIN	FOCAL	1	C11orf30
TCGA.DM.A1D0	11	76899115	77666486	137	0.8785	LARGE-GAIN	FOCAL	8	"AAMDC,AQP11,CLNS1A,GDPD4,INTS4,MYO7A,PAK1,RSF1"
TCGA.CK.5914.01A	11	77051642	77069896	6	1.0224	LARGE-GAIN	FOCAL	1	PAK1
TCGA.AA.3862.01A	11	77602338	77669740	14	2.4117	LARGE-GAIN	FOCAL	1	INTS4
TCGA.AA.3861.01A	11	77602338	77811983	27	1.407	LARGE-GAIN	FOCAL	5	"INTS4,KCTD14,NDUFC2,NDUFC2-KCTD14,THRSP"
TCGA.AG.3906.01A	11	77908931	77924670	9	1.0082	LARGE-GAIN	FOCAL	1	USP35
TCGA.CK.5914.01A	11	77924670	77991595	10	1.0901	LARGE-GAIN	FOCAL	2	"GAB2,USP35"
TCGA.A6.5667	11	78323350	78341304	4	1.2246	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	78387149	78467798	13	1.2475	LARGE-GAIN	FOCAL	1	TENM4
TCGA.AG.3909.01A	11	78399047	78523135	17	0.7762	LARGE-GAIN	FOCAL	1	TENM4
TCGA.CK.5914.01A	11	78440404	78525297	10	0.8286	LARGE-GAIN	FOCAL	1	TENM4
TCGA.DY.A1DC	11	80942336	80980656	13	1.0225	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	11	81461365	81474348	8	1.0716	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	11	81461387	81471618	6	1.2741	LARGE-GAIN	FOCAL	0	None
TCGA.DC.6158	11	82028714	82034433	7	0.7849	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	11	84159544	84176260	8	1.4273	LARGE-GAIN	FOCAL	1	DLG2
TCGA.AA.A010.01A	11	86176083	86382763	7	0.9807	LARGE-GAIN	FOCAL	1	ME3
TCGA.AA.A00N.01A	11	86198332	86382763	6	1.2907	LARGE-GAIN	FOCAL	1	ME3
TCGA.DY.A1DC	11	87601137	87611310	10	1.2822	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	87847116	89443420	58	0.8624	LARGE-GAIN	FOCAL	6	"CTSC,FOLH1B,GRM5,NOX4,RAB38,TYR"
TCGA.AA.3967.01A	11	89644706	89730283	2	1.6066	LARGE-GAIN	FOCAL	3	"TRIM49D1,TRIM49D2,TRIM64"
TCGA.AA.A00N.01A	11	89955994	92577062	22	0.7375	LARGE-GAIN	FOCAL	2	"CHORDC1,FAT3"
TCGA.AA.A00N.01A	11	94038754	94040743	4	2.2493	LARGE-GAIN	FOCAL	1	IZUMO1R
TCGA.AA.A01Q.01A	11	94532508	94731690	7	0.7805	LARGE-GAIN	FOCAL	3	"AMOTL1,CWC15,KDM4D"
TCGA.CK.5914.01A	11	94908632	94926557	8	0.8152	LARGE-GAIN	FOCAL	1	SESN3
TCGA.CK.4948.01B	11	95504673	95512970	5	0.8851	LARGE-GAIN	FOCAL	1	FAM76B
TCGA.AA.A00F.01A	11	95523788	96124965	36	0.7091	LARGE-GAIN	FOCAL	5	"CCDC82,CEP57,JRKL,MAML2,MTMR2"
TCGA.G4.6317	11	95641601	97058948	487	1.7651	LARGE-GAIN	FOCAL	4	"CCDC82,JRKL,MAML2,MTMR2"
TCGA.G4.6317	11	99379173	100217434	359	1.7885	LARGE-GAIN	FOCAL	1	CNTN5
TCGA.DY.A1DC	11	100165330	100178539	7	1.4556	LARGE-GAIN	FOCAL	1	CNTN5
TCGA.AA.A00N.01A	11	102033155	102195190	8	0.7717	LARGE-GAIN	FOCAL	2	"BIRC3,YAP1"
TCGA.AA.A00F.01A	11	102201689	102221523	6	0.8523	LARGE-GAIN	FOCAL	2	"BIRC2,BIRC3"
TCGA.AA.A00N.01A	11	102323214	102576293	25	0.8527	LARGE-GAIN	FOCAL	4	"MMP20,MMP27,MMP7,TMEM123"
TCGA.AG.A01W.01A	11	102587722	102607166	7	0.6807	LARGE-GAIN	FOCAL	1	MMP8
TCGA.AA.A00F.01A	11	102595433	102651171	10	0.6814	LARGE-GAIN	FOCAL	2	"MMP10,MMP8"
TCGA.AA.A010.01A	11	102933019	102980254	8	0.8418	LARGE-GAIN	FOCAL	2	"DCUN1D5,DYNC2H1"
TCGA.AA.A00F.01A	11	102953461	102962482	4	0.7956	LARGE-GAIN	FOCAL	1	DCUN1D5
TCGA.AA.A00N.01A	11	102995782	103870749	82	0.8145	LARGE-GAIN	FOCAL	2	"DYNC2H1,PDGFD"
TCGA.AZ.4684.01A	11	103024015	103033707	7	1.9364	LARGE-GAIN	FOCAL	1	DYNC2H1
TCGA.DY.A1DC	11	104719724	104745329	11	0.9854	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	11	105836633	105961266	12	0.734	LARGE-GAIN	FOCAL	4	"AASDHPPT,GRIA4,KBTBD3,MSANTD4"
TCGA.DM.A1HB	11	108837214	108845053	9	0.9687	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	11	108845078	108851424	6	1.4631	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	111558693	111608125	13	0.7496	LARGE-GAIN	FOCAL	2	"PPP2R1B,SIK2"
TCGA.AG.3906.01A	11	111613220	111680326	15	0.8547	LARGE-GAIN	FOCAL	2	"ALG9,PPP2R1B"
TCGA.AA.A010.01A	11	113073087	113186912	23	0.7482	LARGE-GAIN	FOCAL	2	"NCAM1,TTC12"
TCGA.AA.A010.01A	11	113258570	113576894	29	1.0035	LARGE-GAIN	FOCAL	3	"ANKK1,DRD2,TMPRSS5"
TCGA.AG.3909.01A	11	113802032	113860136	16	0.9341	LARGE-GAIN	FOCAL	2	"HTR3A,HTR3B"
TCGA.CK.5914.01A	11	113813657	113860136	12	0.8795	LARGE-GAIN	FOCAL	2	"HTR3A,HTR3B"
TCGA.AA.A00N.01A	11	113813657	114271340	25	0.9099	LARGE-GAIN	FOCAL	6	"C11orf71,HTR3A,HTR3B,NNMT,RBM7,ZBTB16"
TCGA.AA.A010.01A	11	113845976	114320521	32	1.0081	LARGE-GAIN	FOCAL	6	"C11orf71,HTR3A,NNMT,RBM7,REXO2,ZBTB16"
TCGA.AZ.4684.01A	11	114276385	114450807	14	0.8389	LARGE-GAIN	FOCAL	4	"NXPE1,NXPE4,RBM7,REXO2"
TCGA.AA.3509.01A	11	114316649	114450807	9	0.8918	LARGE-GAIN	FOCAL	3	"NXPE1,NXPE4,REXO2"
TCGA.AA.A00N.01A	11	114392648	116619148	26	0.9215	LARGE-GAIN	FOCAL	5	"BUD13,CADM1,NXPE1,NXPE2,NXPE4"
TCGA.AA.A010.01A	11	116658498	116766921	30	0.7	LARGE-GAIN	FOCAL	6	"APOA1,APOA4,APOA5,APOC3,SIK3,ZPR1"
TCGA.AA.A00N.01A	11	116719788	116827615	23	0.9638	LARGE-GAIN	FOCAL	1	SIK3
TCGA.AA.3815.01A	11	117063261	117064522	3	0.9577	LARGE-GAIN	FOCAL	1	SIDT2
TCGA.AA.3509.01A	11	117076661	117079563	5	1.0981	LARGE-GAIN	FOCAL	1	PCSK7
TCGA.AZ.4684.01A	11	117076661	117079563	5	1.0656	LARGE-GAIN	FOCAL	1	PCSK7
TCGA.AG.3906.01A	11	117090295	117117488	13	0.7994	LARGE-GAIN	FOCAL	2	"PCSK7,RNF214"
TCGA.AG.3891.01A	11	117109365	117117488	4	1.02	LARGE-GAIN	FOCAL	1	RNF214
TCGA.AG.3909.01A	11	117241768	117265016	12	0.9456	LARGE-GAIN	FOCAL	1	CEP164
TCGA.AA.A010.01A	11	117241768	117403040	51	0.7669	LARGE-GAIN	FOCAL	2	"CEP164,DSCAML1"
TCGA.AA.A010.01A	11	117772871	117975359	25	0.7317	LARGE-GAIN	FOCAL	3	"IL10RA,TMPRSS13,TMPRSS4"
TCGA.AG.3909.01A	11	117947923	117988526	13	1.0171	LARGE-GAIN	FOCAL	1	TMPRSS4
TCGA.AA.A010.01A	11	118064987	118071152	4	0.8518	LARGE-GAIN	FOCAL	1	AMICA1
TCGA.AG.4009.01A	11	118495620	118533564	23	0.7188	LARGE-GAIN	FOCAL	2	"PHLDB1,TREH"
TCGA.DT.5265	11	118579746	118925934	64	0.8854	LARGE-GAIN	FOCAL	10	"BCL9L,CCDC84,CXCR5,DDX6,FOXR1,HYOU1,RPS25,SLC37A4,TRAPPC4,UPK2"
TCGA.AG.A023.01A	11	118889806	118890810	2	3.1489	LARGE-GAIN	FOCAL	1	TRAPPC4
TCGA.AG.3906.01A	11	118916259	118947570	24	1.1699	LARGE-GAIN	FOCAL	2	"HYOU1,VPS11"
TCGA.AG.3906.01A	11	119181019	119185166	6	1.0444	LARGE-GAIN	FOCAL	1	MCAM
TCGA.AA.A00N.01A	11	120276757	120837853	56	0.8019	LARGE-GAIN	FOCAL	2	"ARHGEF12,GRIK4"
TCGA.AG.3909.01A	11	120355680	120837853	18	0.8399	LARGE-GAIN	FOCAL	2	"ARHGEF12,GRIK4"
TCGA.AA.A010.01A	11	120530967	120827460	14	0.7771	LARGE-GAIN	FOCAL	1	GRIK4
TCGA.AZ.4684.01A	11	120918243	120957436	5	1.2846	LARGE-GAIN	FOCAL	1	TBCEL
TCGA.AA.3509.01A	11	120924251	120925734	2	1.6775	LARGE-GAIN	FOCAL	1	TBCEL
TCGA.AA.A00N.01A	11	120924251	121023541	17	0.7283	LARGE-GAIN	FOCAL	2	"TBCEL,TECTA"
TCGA.AA.A010.01A	11	120976508	121177735	26	0.6857	LARGE-GAIN	FOCAL	2	"SC5D,TECTA"
TCGA.AG.A015.01A	11	121059736	121061378	3	0.7196	LARGE-GAIN	FOCAL	1	TECTA
TCGA.AG.3909.01A	11	121358694	121474875	30	0.6804	LARGE-GAIN	FOCAL	1	SORL1
TCGA.CK.5914.01A	11	121358694	121474875	30	0.7168	LARGE-GAIN	FOCAL	1	SORL1
TCGA.AA.A00N.01A	11	121383680	122726373	64	0.969	LARGE-GAIN	FOCAL	4	"BLID,CRTAM,SORL1,UBASH3B"
TCGA.AG.3909.01A	11	121483392	122709176	27	0.7067	LARGE-GAIN	FOCAL	3	"BLID,SORL1,UBASH3B"
TCGA.AA.A010.01A	11	122848340	123624241	51	0.6972	LARGE-GAIN	FOCAL	6	"BSX,CLMP,GRAMD1B,HSPA8,SCN3B,ZNF202"
TCGA.CK.5914.01A	11	123464746	123489354	15	0.7682	LARGE-GAIN	FOCAL	1	GRAMD1B
TCGA.AG.3909.01A	11	123474087	123489354	11	0.9905	LARGE-GAIN	FOCAL	1	GRAMD1B
TCGA.AA.A00N.01A	11	123474087	123516258	17	0.7613	LARGE-GAIN	FOCAL	2	"GRAMD1B,SCN3B"
TCGA.AA.A00N.01A	11	123810373	123893690	5	1.9592	LARGE-GAIN	FOCAL	4	"OR10G4,OR10S1,OR4D5,OR6T1"
TCGA.AA.A00N.01A	11	123900308	124015917	16	1.0565	LARGE-GAIN	FOCAL	3	"OR10G7,OR10G8,VWA5A"
TCGA.AA.A010.01A	11	123988159	124007725	11	0.7779	LARGE-GAIN	FOCAL	1	VWA5A
TCGA.AA.A010.01A	11	124481403	124543473	23	0.9244	LARGE-GAIN	FOCAL	3	"PANX3,SIAE,TBRG1"
TCGA.AG.3906.01A	11	124617404	124637053	12	0.7754	LARGE-GAIN	FOCAL	3	"ESAM,MSANTD2,VSIG2"
TCGA.AA.A01D.01A	11	124624083	124626425	4	4.0929	LARGE-GAIN	FOCAL	1	ESAM
TCGA.AA.A010.01A	11	124669776	124738651	3	1.0547	LARGE-GAIN	FOCAL	2	"MSANTD2,ROBO3"
TCGA.AA.A010.01A	11	124971986	125333326	18	0.7287	LARGE-GAIN	FOCAL	3	"FEZ1,PKNOX2,TMEM218"
TCGA.AG.4009.01A	11	125221144	125322166	13	0.7009	LARGE-GAIN	FOCAL	2	"FEZ1,PKNOX2"
TCGA.AA.A00N.01A	11	125221144	125330347	16	0.994	LARGE-GAIN	FOCAL	2	"FEZ1,PKNOX2"
TCGA.AG.3909.01A	11	125221144	125333326	17	0.7151	LARGE-GAIN	FOCAL	2	"FEZ1,PKNOX2"
TCGA.AG.A01W.01A	11	125280252	125281158	3	0.9262	LARGE-GAIN	FOCAL	1	PKNOX2
TCGA.AG.A00C.01A	11	125359318	125452227	10	0.7168	LARGE-GAIN	FOCAL	3	"EI24,FEZ1,LOC403312"
TCGA.AG.A01W.01A	11	125651463	125652532	3	0.7194	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	125850892	125891096	15	0.7748	LARGE-GAIN	FOCAL	1	CDON
TCGA.AA.A010.01A	11	126075322	126081333	4	1.0812	LARGE-GAIN	FOCAL	1	RPUSD4
TCGA.AH.6897	11	126274002	126278074	3	1.2622	LARGE-GAIN	FOCAL	1	ST3GAL4
TCGA.A6.3808.01A	11	126301190	126310306	4	3.2267	LARGE-GAIN	FOCAL	1	KIRREL3
TCGA.DM.A28F	11	131604041	133604434	929	0.931	LARGE-GAIN	FOCAL	2	"NTM,OPCML"
TCGA.AG.A01W.01A	11	133304729	133312877	8	0.9482	LARGE-GAIN	FOCAL	1	OPCML
TCGA.AF.3914.01A	11	134027792	134028173	2	1.8493	LARGE-GAIN	FOCAL	1	NCAPD3
TCGA.AM.5820	11	134237112	134275452	22	0.7777	LARGE-GAIN	FOCAL	2	"B3GAT1,GLB1L2"
TCGA.AF.3914.01A	11	134251787	134257391	4	1.1572	LARGE-GAIN	FOCAL	1	B3GAT1
TCGA.DM.A28F	11	134719068	134807796	40	0.8866	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A0XA	12	192219	915769	241	1.3929	LARGE-GAIN	FOCAL	8	"B4GALNT3,CCDC77,IQSEC3,KDM5A,NINJ2,SLC6A12,SLC6A13,WNK1"
TCGA.A6.3807	12	192219	1180412	298	0.8595	LARGE-GAIN	FOCAL	10	"B4GALNT3,CCDC77,ERC1,IQSEC3,KDM5A,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1"
TCGA.AZ.6606	12	192219	1384837	346	1.7106	LARGE-GAIN	FOCAL	10	"B4GALNT3,CCDC77,ERC1,IQSEC3,KDM5A,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1"
TCGA.AA.A00K.01A	12	247392	301607	11	1.2589	LARGE-GAIN	FOCAL	2	"IQSEC3,SLC6A12"
TCGA.CM.4744.01A	12	247392	772467	99	1.1012	LARGE-GAIN	FOCAL	7	"B4GALNT3,CCDC77,IQSEC3,KDM5A,NINJ2,SLC6A12,SLC6A13"
TCGA.AA.A00N.01A	12	333526	442674	27	0.9115	LARGE-GAIN	FOCAL	2	"KDM5A,SLC6A13"
TCGA.CK.5914.01A	12	346304	404762	9	0.9314	LARGE-GAIN	FOCAL	2	"KDM5A,SLC6A13"
TCGA.AG.3611.01A	12	440956	547464	9	0.9832	LARGE-GAIN	FOCAL	2	"CCDC77,KDM5A"
TCGA.AA.A00N.01A	12	675069	1017603	33	0.765	LARGE-GAIN	FOCAL	2	"NINJ2,WNK1"
TCGA.AG.3881	12	772240	1000850	53	1.8799	LARGE-GAIN	FOCAL	2	"NINJ2,WNK1"
TCGA.AA.3952	12	915769	1249249	88	1.1448	LARGE-GAIN	FOCAL	3	"ERC1,RAD52,WNK1"
TCGA.DY.A0XA	12	928910	1721253	195	1.7155	LARGE-GAIN	FOCAL	4	"ERC1,FBXL14,RAD52,WNK1"
TCGA.AG.3881	12	1009055	2350451	423	1.5618	LARGE-GAIN	FOCAL	10	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,LRTM2,RAD52,WNK1,WNT5B"
TCGA.DY.A1DD	12	1063418	2791529	594	0.6906	LARGE-GAIN	FOCAL	9	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,LRTM2,RAD52,WNT5B"
TCGA.D5.6539	12	1180412	1597712	99	0.7379	LARGE-GAIN	FOCAL	1	ERC1
TCGA.DY.A0XA	12	1725752	2842564	449	1.0716	LARGE-GAIN	FOCAL	6	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,LRTM2,WNT5B"
TCGA.CK.5914.01A	12	2058200	2076944	5	0.9344	LARGE-GAIN	FOCAL	1	DCP1B
TCGA.AA.3952	12	2058244	2500430	178	0.9638	LARGE-GAIN	FOCAL	2	"CACNA1C,DCP1B"
TCGA.AG.A00Y.01A	12	2229440	2773944	36	0.9758	LARGE-GAIN	FOCAL	1	CACNA1C
TCGA.AA.3952	12	2503708	3100932	197	1.0005	LARGE-GAIN	FOCAL	8	"CACNA1C,FKBP4,FOXM1,ITFG2,NRIP2,RHNO1,TEAD4,TULP3"
TCGA.AA.A00Q.01A	12	2719660	2778048	7	0.9235	LARGE-GAIN	FOCAL	1	CACNA1C
TCGA.AA.A02K.01A	12	2764258	2774718	3	0.9354	LARGE-GAIN	FOCAL	1	CACNA1C
TCGA.AG.3891.01A	12	2800029	2910245	8	0.6979	LARGE-GAIN	FOCAL	2	"CACNA1C,FKBP4"
TCGA.DY.A0XA	12	2864724	3303398	145	1.4942	LARGE-GAIN	FOCAL	8	"FKBP4,FOXM1,ITFG2,NRIP2,RHNO1,TEAD4,TSPAN9,TULP3"
TCGA.AG.3906.01A	12	2906265	2926336	9	1.1383	LARGE-GAIN	FOCAL	2	"FKBP4,ITFG2"
TCGA.AA.A010.01A	12	3103883	3129758	7	1.1088	LARGE-GAIN	FOCAL	1	TEAD4
TCGA.AA.3952	12	3109640	3564973	206	1.4341	LARGE-GAIN	FOCAL	3	"PRMT8,TEAD4,TSPAN9"
TCGA.AA.A010.01A	12	3392160	3805911	28	0.7125	LARGE-GAIN	FOCAL	3	"CRACR2A,PRMT8,TSPAN9"
TCGA.AA.3952	12	3566948	4696289	505	1.7542	LARGE-GAIN	FOCAL	9	"C12orf4,CCND2,CRACR2A,FGF23,FGF6,PARP11,PRMT8,RAD51AP1,TIGAR"
TCGA.AG.3881	12	4386772	4723668	146	1.733	LARGE-GAIN	FOCAL	7	"C12orf4,CCND2,DYRK4,FGF23,FGF6,RAD51AP1,TIGAR"
TCGA.NH.A50U	12	5357386	5577866	129	0.7157	LARGE-GAIN	FOCAL	1	NTF3
TCGA.AA.3660	12	6046848	6062852	11	1.0806	LARGE-GAIN	FOCAL	2	"ANO2,VWF"
TCGA.AA.A01Q.01A	12	6076605	6094688	9	1.1494	LARGE-GAIN	FOCAL	1	VWF
TCGA.AA.A00N.01A	12	6076605	6120796	14	1.4131	LARGE-GAIN	FOCAL	1	VWF
TCGA.AG.3909.01A	12	6076605	6120796	14	0.9401	LARGE-GAIN	FOCAL	1	VWF
TCGA.CK.5914.01A	12	6076605	6120796	14	0.7124	LARGE-GAIN	FOCAL	1	VWF
TCGA.AA.A01Q.01A	12	6100966	6120796	5	0.7191	LARGE-GAIN	FOCAL	1	VWF
TCGA.AA.3862.01A	12	6105126	6134699	10	2.0268	LARGE-GAIN	FOCAL	1	VWF
TCGA.AG.3611.01A	12	6120796	6132748	8	0.8427	LARGE-GAIN	FOCAL	1	VWF
TCGA.AA.3861.01A	12	6120796	6135035	10	2.131	LARGE-GAIN	FOCAL	1	VWF
TCGA.AD.6965	12	6195995	6196412	6	0.9656	LARGE-GAIN	FOCAL	1	VWF
TCGA.CK.5914.01A	12	6341749	6421351	6	0.7273	LARGE-GAIN	FOCAL	2	"CD9,PLEKHG6"
TCGA.AG.3909.01A	12	6554245	6567790	10	0.7529	LARGE-GAIN	FOCAL	2	"CD27,TAPBPL"
TCGA.AA.A00N.01A	12	6554245	6571907	14	0.7229	LARGE-GAIN	FOCAL	3	"CD27,TAPBPL,VAMP1"
TCGA.AG.A032.01A	12	6675219	6675661	2	2.3152	LARGE-GAIN	FOCAL	1	NOP2
TCGA.AA.3939.01A	12	6749189	6840155	35	0.794	LARGE-GAIN	FOCAL	5	"ACRBP,COPS7A,ING4,PIANP,ZNF384"
TCGA.AG.A036.01A	12	6843206	6844111	2	1.6456	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3611.01A	12	6861399	6887362	11	0.8657	LARGE-GAIN	FOCAL	3	"LAG3,MLF2,PTMS"
TCGA.AG.3906.01A	12	6878708	6886915	9	1.2775	LARGE-GAIN	FOCAL	2	"LAG3,PTMS"
TCGA.AA.3939.01A	12	6886422	6935324	14	0.7644	LARGE-GAIN	FOCAL	3	"CD4,GPR162,LAG3"
TCGA.AG.3906.01A	12	6887362	6935324	11	0.8175	LARGE-GAIN	FOCAL	3	"CD4,GPR162,LAG3"
TCGA.AA.3939.01A	12	6954758	6972313	19	0.8522	LARGE-GAIN	FOCAL	3	"CDCA3,GNB3,USP5"
TCGA.AG.3891.01A	12	6964863	6965130	2	1.6632	LARGE-GAIN	FOCAL	1	USP5
TCGA.AA.3939.01A	12	6972966	6974282	3	2.0645	LARGE-GAIN	FOCAL	1	USP5
TCGA.AG.3906.01A	12	7019002	7027056	8	0.7831	LARGE-GAIN	FOCAL	2	"ENO2,LRRC23"
TCGA.AG.3906.01A	12	7028690	7044728	6	1.306	LARGE-GAIN	FOCAL	2	"ATN1,ENO2"
TCGA.AA.A024.01A	12	7075532	7077552	5	2.08	LARGE-GAIN	FOCAL	1	PHB2
TCGA.A6.3808.01A	12	7175701	7295433	28	1.8919	LARGE-GAIN	FOCAL	5	"C1R,C1RL,C1S,CLSTN3,RBP5"
TCGA.AA.A00N.01A	12	7175701	7310529	34	0.8706	LARGE-GAIN	FOCAL	5	"C1R,C1RL,C1S,CLSTN3,RBP5"
TCGA.AA.A010.01A	12	7187799	7342952	33	0.7089	LARGE-GAIN	FOCAL	5	"C1R,C1RL,CLSTN3,PEX5,RBP5"
TCGA.AA.A02K.01A	12	7354796	7355166	2	1.0138	LARGE-GAIN	FOCAL	1	PEX5
TCGA.AA.A00N.01A	12	7362292	7521446	17	0.868	LARGE-GAIN	FOCAL	3	"ACSM4,CD163L1,PEX5"
TCGA.AA.A00N.01A	12	7521924	7559117	10	1.6327	LARGE-GAIN	FOCAL	1	CD163L1
TCGA.AA.3861.01A	12	7525929	8083794	65	1.0317	LARGE-GAIN	FOCAL	10	"APOBEC1,CD163,CD163L1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AA.A00F.01A	12	7584992	7596608	4	0.782	LARGE-GAIN	FOCAL	1	CD163L1
TCGA.AA.A00N.01A	12	7632413	7656167	14	0.977	LARGE-GAIN	FOCAL	1	CD163
TCGA.AA.A00K.01A	12	7655028	8196241	43	0.7321	LARGE-GAIN	FOCAL	10	"APOBEC1,CD163,CLEC4C,DPPA3,FOXJ2,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AA.3850	12	7817771	8150606	70	0.69345	LARGE-GAIN	FOCAL	8	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AA.3941	12	7817771	8167540	72	0.8318	LARGE-GAIN	FOCAL	8	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AA.3862.01A	12	7922539	8083794	21	1.5882	LARGE-GAIN	FOCAL	4	"NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AF.2693	12	7945383	8283535	83	2.0541	LARGE-GAIN	FOCAL	7	"C3AR1,CLEC4A,FOXJ2,NANOG,NECAP1,SLC2A14,SLC2A3"
TCGA.AG.A032.01A	12	7980041	7985273	5	1.0427	LARGE-GAIN	FOCAL	1	SLC2A14
TCGA.AA.3509.01A	12	8608622	8673683	12	0.7838	LARGE-GAIN	FOCAL	2	"CLEC4D,CLEC6A"
TCGA.AZ.4684.01A	12	8618043	8673683	9	0.8125	LARGE-GAIN	FOCAL	2	"CLEC4D,CLEC6A"
TCGA.DM.A28M.01A	12	8629888	8667802	2	2.0232	LARGE-GAIN	FOCAL	2	"CLEC4D,CLEC6A"
TCGA.DY.A0XA	12	8756570	9345407	155	1.4784	LARGE-GAIN	FOCAL	9	"A2M,A2ML1,AICDA,KLRG1,M6PR,MFAP5,PHC1,PZP,RIMKLB"
TCGA.AG.A00C.01A	12	9220349	9222284	4	0.6919	LARGE-GAIN	FOCAL	1	A2M
TCGA.AA.A00N.01A	12	9307195	9360798	28	1.0402	LARGE-GAIN	FOCAL	1	PZP
TCGA.AA.A010.01A	12	9310964	9392100	26	0.7314	LARGE-GAIN	FOCAL	1	PZP
TCGA.AG.A032.01A	12	9354845	9356316	2	1.4284	LARGE-GAIN	FOCAL	1	PZP
TCGA.AZ.6606	12	9513838	9927653	134	1.1411	LARGE-GAIN	FOCAL	4	"CD69,CLEC2D,CLECL1,KLRB1"
TCGA.AZ.6606	12	10006419	10062191	26	1.1194	LARGE-GAIN	FOCAL	3	"CLEC2A,CLEC2B,KLRF2"
TCGA.AG.3611.01A	12	10279955	10324550	9	0.9077	LARGE-GAIN	FOCAL	3	"CLEC7A,OLR1,TMEM52B"
TCGA.AG.3906.01A	12	10324550	10342463	5	0.7235	LARGE-GAIN	FOCAL	2	"OLR1,TMEM52B"
TCGA.AA.A00N.01A	12	10460584	10865760	56	0.9601	LARGE-GAIN	FOCAL	10	"KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRK1,MAGOHB,STYK1,YBX3"
TCGA.AA.3861.01A	12	10560205	10601808	17	1.6228	LARGE-GAIN	FOCAL	5	"KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1"
TCGA.AA.A00N.01A	12	11420087	11546859	16	2.1429	LARGE-GAIN	FOCAL	4	"PRB1,PRB2,PRB3,PRB4"
TCGA.AA.A01Q.01A	12	11420087	11546859	13	0.8235	LARGE-GAIN	FOCAL	4	"PRB1,PRB2,PRB3,PRB4"
TCGA.AA.A02E.01A	12	11420087	11546859	17	1.0451	LARGE-GAIN	FOCAL	4	"PRB1,PRB2,PRB3,PRB4"
TCGA.CK.5914.01A	12	11420087	11546859	17	1.951	LARGE-GAIN	FOCAL	4	"PRB1,PRB2,PRB3,PRB4"
TCGA.AG.A025.01A	12	11420087	11548334	19	1.1809	LARGE-GAIN	FOCAL	4	"PRB1,PRB2,PRB3,PRB4"
TCGA.AA.A02H.01A	12	11506003	11548334	11	1.4119	LARGE-GAIN	FOCAL	2	"PRB1,PRB2"
TCGA.AA.A00N.01A	12	11547350	12037382	8	0.7503	LARGE-GAIN	FOCAL	2	"ETV6,PRB2"
TCGA.AA.A00N.01A	12	12303733	12317966	6	1.3268	LARGE-GAIN	FOCAL	1	LRP6
TCGA.AA.A00N.01A	12	12332727	12356117	5	0.8124	LARGE-GAIN	FOCAL	1	LRP6
TCGA.AA.A00N.01A	12	13366365	14927394	69	0.8765	LARGE-GAIN	FOCAL	7	"ATF7IP,EMP1,GRIN2B,GUCY2C,H2AFJ,HIST4H4,PLBD1"
TCGA.AA.A00N.01A	12	14993337	16035591	71	0.9076	LARGE-GAIN	FOCAL	9	"ARHGDIB,ART4,EPS8,ERP27,MGP,PDE6H,PTPRO,RERG,STRAP"
TCGA.AG.3731	12	15236298	15545180	90	0.7716	LARGE-GAIN	FOCAL	2	"PTPRO,RERG"
TCGA.DM.A1D7	12	15577502	18108047	721	0.9199	LARGE-GAIN	FOCAL	7	"DERA,EPS8,LMO3,MGST1,PTPRO,SLC15A5,STRAP"
TCGA.G4.6302	12	15609783	15616543	7	0.6926	LARGE-GAIN	FOCAL	1	PTPRO
TCGA.G4.6322	12	15609783	15616543	7	0.8065	LARGE-GAIN	FOCAL	1	PTPRO
TCGA.DM.A0XD	12	15754927	15807366	13	0.878	LARGE-GAIN	FOCAL	1	EPS8
TCGA.CI.6620	12	16285537	16805116	188	1.217	LARGE-GAIN	FOCAL	3	"LMO3,MGST1,SLC15A5"
TCGA.AA.A00N.01A	12	16704129	18576848	24	0.8355	LARGE-GAIN	FOCAL	3	"LMO3,PIK3C2G,RERGL"
TCGA.CI.6620	12	17141581	17290524	25	0.8218	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	12	18241762	18891185	43	0.8298	LARGE-GAIN	FOCAL	4	"CAPZA3,PIK3C2G,PLCZ1,RERGL"
TCGA.AA.3952	12	18747527	19380044	220	1.6505	LARGE-GAIN	FOCAL	4	"CAPZA3,PIK3C2G,PLCZ1,PLEKHA5"
TCGA.G5.6641	12	18864552	20036370	436	0.9287	LARGE-GAIN	FOCAL	4	"AEBP2,CAPZA3,PLCZ1,PLEKHA5"
TCGA.AA.3952	12	19384212	19944344	215	1.1074	LARGE-GAIN	FOCAL	2	"AEBP2,PLEKHA5"
TCGA.AA.A00L.01A	12	19511172	19518861	4	0.8175	LARGE-GAIN	FOCAL	1	PLEKHA5
TCGA.AA.3952	12	19944550	20211559	125	1.7065	LARGE-GAIN	FOCAL	0	None
TCGA.G5.6641	12	20635625	21401532	214	1.0494	LARGE-GAIN	FOCAL	5	"PDE3A,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1"
TCGA.AA.A00N.01A	12	20766339	21590606	86	0.8228	LARGE-GAIN	FOCAL	8	"IAPP,PDE3A,PYROXD1,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1"
TCGA.A6.3808.01A	12	21168582	21422432	28	2.0131	LARGE-GAIN	FOCAL	3	"SLCO1A2,SLCO1B1,SLCO1B7"
TCGA.AZ.4684.01A	12	21175747	21422432	25	0.9196	LARGE-GAIN	FOCAL	3	"SLCO1A2,SLCO1B1,SLCO1B7"
TCGA.CK.5914.01A	12	21196229	21207334	5	1.2544	LARGE-GAIN	FOCAL	1	SLCO1B7
TCGA.G5.6641	12	21401675	21523519	43	1.3409	LARGE-GAIN	FOCAL	1	SLCO1A2
TCGA.AA.A00N.01A	12	21953928	22199219	37	0.6963	LARGE-GAIN	FOCAL	2	"ABCC9,CMAS"
TCGA.G5.6641	12	22099660	23457172	455	1.0852	LARGE-GAIN	FOCAL	4	"C2CD5,CMAS,ETNK1,ST8SIA1"
TCGA.AA.A00N.01A	12	22354447	22670888	23	0.791	LARGE-GAIN	FOCAL	2	"C2CD5,ST8SIA1"
TCGA.NH.A50U	12	22713663	22753377	7	0.7343	LARGE-GAIN	FOCAL	0	None
TCGA.NH.A50U	12	22761849	24370490	589	1.0467	LARGE-GAIN	FOCAL	2	"ETNK1,SOX5"
TCGA.G5.6641	12	23457571	24948041	545	1.7186	LARGE-GAIN	FOCAL	1	SOX5
TCGA.AF.2693	12	23494703	23507775	3	1.4046	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	12	23570076	23648699	17	1.6164	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	12	23648783	24251580	226	2.0993	LARGE-GAIN	FOCAL	1	SOX5
TCGA.AA.A00N.01A	12	23687101	25002668	24	0.7354	LARGE-GAIN	FOCAL	2	"BCAT1,SOX5"
TCGA.AF.2693	12	24265401	24393753	58	1.8123	LARGE-GAIN	FOCAL	1	SOX5
TCGA.AF.2693	12	24397179	25590599	513	2.0867	LARGE-GAIN	FOCAL	7	"BCAT1,C12orf77,CASC1,KRAS,LRMP,LYRM5,SOX5"
TCGA.CM.5349	12	24434925	24434975	2	1.3241	LARGE-GAIN	FOCAL	1	SOX5
TCGA.G5.6641	12	24950549	24951487	3	3.2885	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	12	25678996	25702239	4	1.4152	LARGE-GAIN	FOCAL	1	LMNTD1
TCGA.NH.A8F7	12	25976550	27059223	455	1.004	LARGE-GAIN	FOCAL	5	"ASUN,BHLHE41,ITPR2,RASSF8,SSPN"
TCGA.AG.3906.01A	12	26276526	26277405	3	1.5425	LARGE-GAIN	FOCAL	1	BHLHE41
TCGA.AA.A00N.01A	12	26492287	26878531	50	0.8343	LARGE-GAIN	FOCAL	1	ITPR2
TCGA.AA.A010.01A	12	26806872	26818826	7	0.9565	LARGE-GAIN	FOCAL	1	ITPR2
TCGA.AA.A024.01A	12	26810623	26812025	2	2.7026	LARGE-GAIN	FOCAL	1	ITPR2
TCGA.AA.3660	12	26833496	26846970	10	0.814	LARGE-GAIN	FOCAL	1	ITPR2
TCGA.AA.A00N.01A	12	27521158	27863726	52	0.6871	LARGE-GAIN	FOCAL	5	"ARNTL2,MRPS35,PPFIBP1,REP15,SMCO2"
TCGA.AA.A010.01A	12	27863726	27908106	8	0.6929	LARGE-GAIN	FOCAL	1	MRPS35
TCGA.AA.3509.01A	12	28410066	28605369	8	1.7831	LARGE-GAIN	FOCAL	1	CCDC91
TCGA.AZ.4684.01A	12	28410066	28605369	8	1.4203	LARGE-GAIN	FOCAL	1	CCDC91
TCGA.DM.A282.01A	12	28603049	28605369	2	0.9573	LARGE-GAIN	FOCAL	1	CCDC91
TCGA.DY.A1DC	12	29093523	29111975	11	1.212	LARGE-GAIN	FOCAL	0	None
TCGA.CK.4948.01B	12	29521101	29580452	4	0.7815	LARGE-GAIN	FOCAL	1	ERGIC2
TCGA.AA.A00N.01A	12	29580452	30823846	59	0.8624	LARGE-GAIN	FOCAL	3	"IPO8,OVCH1,TMTC1"
TCGA.AG.3602	12	30497128	30562775	49	1.1773	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	12	30789879	30848453	21	0.7257	LARGE-GAIN	FOCAL	1	IPO8
TCGA.AA.A02H.01A	12	30848453	30884230	14	0.7134	LARGE-GAIN	FOCAL	2	"CAPRIN2,IPO8"
TCGA.AZ.4323	12	31048577	31626731	206	0.9449	LARGE-GAIN	FOCAL	4	"DDX11,DENND5B,FAM60A,TSPAN11"
TCGA.D5.6539	12	31072639	31074861	3	0.7047	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	12	31116711	31135946	5	1.2651	LARGE-GAIN	FOCAL	1	TSPAN11
TCGA.AA.3844	12	31128605	31161002	28	0.9683	LARGE-GAIN	FOCAL	1	TSPAN11
TCGA.AA.3862.01A	12	31132454	31435599	27	1.1161	LARGE-GAIN	FOCAL	3	"DDX11,FAM60A,TSPAN11"
TCGA.CK.5914.01A	12	31435599	31448129	4	0.9247	LARGE-GAIN	FOCAL	1	FAM60A
TCGA.AA.A00K.01A	12	31440527	32903636	61	0.6964	LARGE-GAIN	FOCAL	10	"AMN1,BICD1,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,YARS2"
TCGA.AG.3881	12	32314912	32370965	18	1.0677	LARGE-GAIN	FOCAL	1	BICD1
TCGA.AA.3715	12	33072517	33117949	22	0.9576	LARGE-GAIN	FOCAL	0	None
TCGA.G5.6641	12	33339370	33342576	3	1.723	LARGE-GAIN	FOCAL	0	None
TCGA.G5.6641	12	33342912	34758032	274	1.071	LARGE-GAIN	FOCAL	2	"ALG10,SYT10"
TCGA.AA.A00N.01A	12	34175487	40020054	70	0.932	LARGE-GAIN	FOCAL	6	"ABCD2,ALG10,ALG10B,C12orf40,CPNE8,KIF21A"
TCGA.AZ.4684.01A	12	34176896	40827536	150	0.778	LARGE-GAIN	FOCAL	9	"ABCD2,ALG10,ALG10B,C12orf40,CPNE8,KIF21A,LRRK2,MUC19,SLC2A13"
TCGA.AF.6672	12	34753607	34835836	7	0.7112	LARGE-GAIN	FOCAL	0	None
TCGA.G5.6641	12	34758265	34775884	4	2.048	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	12	40258517	40590474	8	0.8813	LARGE-GAIN	FOCAL	1	SLC2A13
TCGA.AA.A00N.01A	12	40653240	40716930	24	0.8757	LARGE-GAIN	FOCAL	1	LRRK2
TCGA.AA.A00N.01A	12	40814001	40837886	18	1.0775	LARGE-GAIN	FOCAL	1	MUC19
TCGA.CK.5914.01A	12	40857866	40942320	38	0.9261	LARGE-GAIN	FOCAL	1	MUC19
TCGA.AA.3939.01A	12	40937529	40952967	20	0.8132	LARGE-GAIN	FOCAL	1	MUC19
TCGA.AZ.4684.01A	12	40943641	41408014	34	0.8854	LARGE-GAIN	FOCAL	2	"CNTN1,MUC19"
TCGA.DM.A28M.01A	12	40948501	40951819	4	1.9652	LARGE-GAIN	FOCAL	1	MUC19
TCGA.AA.A00N.01A	12	40948501	42503336	51	0.7993	LARGE-GAIN	FOCAL	4	"CNTN1,GXYLT1,MUC19,PDZRN4"
TCGA.AA.A010.01A	12	40961353	41303790	6	0.9539	LARGE-GAIN	FOCAL	2	"CNTN1,MUC19"
TCGA.AG.3906.01A	12	42717766	42768648	6	0.688	LARGE-GAIN	FOCAL	2	"PPHLN1,ZCRB1"
TCGA.AA.A00N.01A	12	43747960	43895908	32	0.7106	LARGE-GAIN	FOCAL	1	ADAMTS20
TCGA.AA.A010.01A	12	43750239	43771116	6	0.7906	LARGE-GAIN	FOCAL	1	ADAMTS20
TCGA.AG.A032.01A	12	43825098	43827998	4	1.0772	LARGE-GAIN	FOCAL	1	ADAMTS20
TCGA.AA.A010.01A	12	43858377	44164981	20	0.7281	LARGE-GAIN	FOCAL	3	"ADAMTS20,IRAK4,PUS7L"
TCGA.DM.A28M.01A	12	44190732	44191464	3	1.9364	LARGE-GAIN	FOCAL	1	TWF1
TCGA.DY.A1DC	12	44986764	45013985	12	0.7541	LARGE-GAIN	FOCAL	1	NELL2
TCGA.DC.6155	12	45238903	45540933	85	2.0382	LARGE-GAIN	FOCAL	2	"DBX2,NELL2"
TCGA.DC.6155	12	45554293	47358285	448	1.3054	LARGE-GAIN	FOCAL	6	"ANO6,ARID2,SCAF11,SLC38A1,SLC38A2,SLC38A4"
TCGA.AG.A00Y.01A	12	45740751	45742254	3	1.4145	LARGE-GAIN	FOCAL	1	ANO6
TCGA.AZ.4684.01A	12	46240583	48081622	74	0.6984	LARGE-GAIN	FOCAL	8	"AMIGO2,ARID2,PCED1B,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4"
TCGA.AA.A00N.01A	12	46582746	46623286	11	1.0251	LARGE-GAIN	FOCAL	1	SLC38A1
TCGA.DM.A28M.01A	12	46756020	46760588	6	1.8803	LARGE-GAIN	FOCAL	1	SLC38A2
TCGA.AG.A00Y.01A	12	46760588	46760857	2	5.2378	LARGE-GAIN	FOCAL	1	SLC38A2
TCGA.AG.3891.01A	12	48173896	48179122	5	0.6924	LARGE-GAIN	FOCAL	2	"HDAC7,SLC48A1"
TCGA.AA.A00K.01A	12	48179122	48180321	3	2.0673	LARGE-GAIN	FOCAL	1	HDAC7
TCGA.AA.A010.01A	12	48370583	48376243	15	0.7798	LARGE-GAIN	FOCAL	1	COL2A1
TCGA.AG.A00Y.01A	12	48386590	48393670	9	2.474	LARGE-GAIN	FOCAL	1	COL2A1
TCGA.A6.3808.01A	12	48439048	48457442	6	1.485	LARGE-GAIN	FOCAL	1	SENP1
TCGA.CK.5914.01A	12	48439048	48465391	10	0.8977	LARGE-GAIN	FOCAL	1	SENP1
TCGA.A6.3808.01A	12	48491745	48535058	15	1.4033	LARGE-GAIN	FOCAL	2	"PFKM,SENP1"
TCGA.AA.A00N.01A	12	48516532	48536536	15	0.7521	LARGE-GAIN	FOCAL	1	PFKM
TCGA.AG.3906.01A	12	48723058	48739076	5	0.8934	LARGE-GAIN	FOCAL	2	"H1FNT,ZNF641"
TCGA.AG.3906.01A	12	49162342	49176357	15	0.8563	LARGE-GAIN	FOCAL	1	ADCY6
TCGA.AG.3906.01A	12	49221371	49251740	17	0.8982	LARGE-GAIN	FOCAL	3	"CACNB3,DDX23,RND1"
TCGA.AA.A010.01A	12	49312028	49318760	9	0.741	LARGE-GAIN	FOCAL	2	"CCDC65,FKBP11"
TCGA.AG.3906.01A	12	49443507	49460697	12	1.1154	LARGE-GAIN	FOCAL	2	"KMT2D,RHEBL1"
TCGA.AA.A024.01A	12	49497450	49500399	5	1.5308	LARGE-GAIN	FOCAL	1	LMBR1L
TCGA.AA.A010.01A	12	49578753	49582660	4	0.9754	LARGE-GAIN	FOCAL	1	TUBA1A
TCGA.AA.3930.01A	12	49579144	49663335	5	0.8336	LARGE-GAIN	FOCAL	2	"TUBA1A,TUBA1C"
TCGA.AG.3909.01A	12	49960127	49993845	7	0.771	LARGE-GAIN	FOCAL	2	"FAM186B,MCRS1"
TCGA.AG.A01W.01A	12	50689165	50693687	3	1.0381	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	12	50744951	50745905	3	2.1116	LARGE-GAIN	FOCAL	1	FAM186A
TCGA.AG.A015.01A	12	50821516	50835304	7	0.9144	LARGE-GAIN	FOCAL	1	LARP4
TCGA.AA.A00N.01A	12	51034480	51126109	29	0.7323	LARGE-GAIN	FOCAL	1	DIP2B
TCGA.AA.3930.01A	12	51495676	51500971	5	1.0293	LARGE-GAIN	FOCAL	1	TFCP2
TCGA.AM.5820	12	52210090	52245937	7	0.8146	LARGE-GAIN	FOCAL	1	FIGNL2
TCGA.CK.5914.01A	12	52345517	52374711	4	0.9941	LARGE-GAIN	FOCAL	1	ACVR1B
TCGA.AG.3906.01A	12	52402897	52407439	3	1.4275	LARGE-GAIN	FOCAL	1	GRASP
TCGA.AG.A016.01A	12	52402897	52407439	3	0.8379	LARGE-GAIN	FOCAL	1	GRASP
TCGA.AG.A015.01A	12	52711424	52760788	11	0.8209	LARGE-GAIN	FOCAL	2	"KRT83,KRT85"
TCGA.AA.A00N.01A	12	52827581	52967039	45	1.06	LARGE-GAIN	FOCAL	7	"KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT74,KRT75"
TCGA.AA.A010.01A	12	52827581	53004951	58	0.8332	LARGE-GAIN	FOCAL	9	"KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT72,KRT73,KRT74,KRT75"
TCGA.AG.3909.01A	12	52845275	52967039	38	0.8556	LARGE-GAIN	FOCAL	6	"KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT74"
TCGA.AA.A010.01A	12	53162459	53233607	35	0.7893	LARGE-GAIN	FOCAL	5	"KRT3,KRT4,KRT76,KRT78,KRT79"
TCGA.DM.A1HB	12	53193414	53201127	5	1.5357	LARGE-GAIN	FOCAL	1	KRT4
TCGA.AG.3909.01A	12	53201472	53242284	23	0.9337	LARGE-GAIN	FOCAL	3	"KRT4,KRT78,KRT79"
TCGA.AA.A00N.01A	12	53207378	53233607	11	1.3098	LARGE-GAIN	FOCAL	3	"KRT4,KRT78,KRT79"
TCGA.AG.A015.01A	12	53292177	53343106	10	0.7465	LARGE-GAIN	FOCAL	2	"KRT18,KRT8"
TCGA.AG.3906.01A	12	53428349	53457536	23	1.0067	LARGE-GAIN	FOCAL	2	"EIF4B,TNS2"
TCGA.AG.3891.01A	12	53431151	53449325	13	0.9093	LARGE-GAIN	FOCAL	2	"EIF4B,TNS2"
TCGA.AA.A00N.01A	12	53552244	53554862	5	1.0166	LARGE-GAIN	FOCAL	1	CSAD
TCGA.AG.3891.01A	12	53573505	53580135	6	0.7481	LARGE-GAIN	FOCAL	2	"CSAD,ZNF740"
TCGA.AA.3967.01A	12	53693955	53709078	12	0.9736	LARGE-GAIN	FOCAL	2	"AAAS,C12orf10"
TCGA.AG.3891.01A	12	53848523	53865405	12	0.7902	LARGE-GAIN	FOCAL	1	PCBP2
TCGA.AG.A023.01A	12	53877646	53878019	2	3.577	LARGE-GAIN	FOCAL	1	MAP3K12
TCGA.AA.A010.01A	12	53880194	53926895	20	0.8174	LARGE-GAIN	FOCAL	4	"ATF7,MAP3K12,NPFF,TARBP2"
TCGA.A6.3808.01A	12	54105691	54115759	11	2.2345	LARGE-GAIN	FOCAL	1	CALCOCO1
TCGA.AA.A010.01A	12	54575828	54718885	17	0.7649	LARGE-GAIN	FOCAL	5	"CBX5,COPZ1,HNRNPA1,NFE2,SMUG1"
TCGA.AA.A01Q.01A	12	54676047	54718885	4	0.8878	LARGE-GAIN	FOCAL	3	"COPZ1,HNRNPA1,NFE2"
TCGA.AA.A00N.01A	12	54686146	54718885	3	1.7345	LARGE-GAIN	FOCAL	2	"COPZ1,NFE2"
TCGA.AG.3906.01A	12	54764700	54769590	4	1.4018	LARGE-GAIN	FOCAL	1	ZNF385A
TCGA.AA.3509.01A	12	54856378	54858811	3	0.8196	LARGE-GAIN	FOCAL	1	GTSF1
TCGA.CK.5914.01A	12	54977974	55368206	25	0.8295	LARGE-GAIN	FOCAL	5	"DCD,LACRT,MUCL1,PPP1R1A,TESPA1"
TCGA.AG.3909.01A	12	54977974	55420207	25	0.74	LARGE-GAIN	FOCAL	6	"DCD,LACRT,MUCL1,NEUROD4,PPP1R1A,TESPA1"
TCGA.AG.3906.01A	12	56142379	56154292	4	1.0639	LARGE-GAIN	FOCAL	2	"GDF11,SARNP"
TCGA.AG.3909.01A	12	56142379	56182792	5	0.802	LARGE-GAIN	FOCAL	2	"GDF11,SARNP"
TCGA.AA.A010.01A	12	56197383	56330746	28	0.847	LARGE-GAIN	FOCAL	6	"DGKA,DNAJC14,MMP19,ORMDL2,SARNP,WIBG"
TCGA.AG.3909.01A	12	56236475	56297116	3	0.9274	LARGE-GAIN	FOCAL	2	"MMP19,WIBG"
TCGA.AG.A015.01A	12	56349000	56355051	6	0.8774	LARGE-GAIN	FOCAL	1	PMEL
TCGA.AA.A01Q.01A	12	56420535	56435863	3	0.8217	LARGE-GAIN	FOCAL	2	"IKZF4,RPS26"
TCGA.AG.3906.01A	12	56477497	56486466	6	0.9191	LARGE-GAIN	FOCAL	1	ERBB3
TCGA.AA.A024.01A	12	56486466	56488175	6	1.8059	LARGE-GAIN	FOCAL	1	ERBB3
TCGA.AG.3891.01A	12	56568386	56601897	15	0.9574	LARGE-GAIN	FOCAL	2	"RNF41,SMARCC2"
TCGA.AG.3906.01A	12	56571742	56574711	4	0.9254	LARGE-GAIN	FOCAL	1	SMARCC2
TCGA.AG.3906.01A	12	56575215	56580954	7	1.5242	LARGE-GAIN	FOCAL	1	SMARCC2
TCGA.AG.3906.01A	12	56600182	56601897	3	0.9665	LARGE-GAIN	FOCAL	1	RNF41
TCGA.AA.3930.01A	12	56600182	56607700	5	1.1742	LARGE-GAIN	FOCAL	1	RNF41
TCGA.AG.3909.01A	12	56726546	56754979	21	0.8237	LARGE-GAIN	FOCAL	4	"APOF,IL23A,PAN2,STAT2"
TCGA.AA.A024.01A	12	56816594	56818498	3	1.429	LARGE-GAIN	FOCAL	1	TIMELESS
TCGA.AA.A00N.01A	12	56881703	56998816	23	0.7636	LARGE-GAIN	FOCAL	3	"BAZ2A,GLS2,RBMS2"
TCGA.AA.3862.01A	12	57037135	57066460	11	1.6379	LARGE-GAIN	FOCAL	2	"ATP5B,PTGES3"
TCGA.CK.5914.01A	12	57109677	57112010	3	1.9575	LARGE-GAIN	FOCAL	1	NACA
TCGA.AG.3891.01A	12	57175711	57180862	3	1	LARGE-GAIN	FOCAL	1	HSD17B6
TCGA.AG.3906.01A	12	57175711	57180862	3	1.6566	LARGE-GAIN	FOCAL	1	HSD17B6
TCGA.AG.A00H.01A	12	57317569	57350917	8	0.7256	LARGE-GAIN	FOCAL	2	"RDH16,SDR9C7"
TCGA.AG.3906.01A	12	57388944	57409441	8	1.2291	LARGE-GAIN	FOCAL	3	"GPR182,TAC3,ZBTB39"
TCGA.AG.3909.01A	12	57409441	57441755	22	0.9871	LARGE-GAIN	FOCAL	2	"MYO1A,TAC3"
TCGA.AA.A00N.01A	12	57422487	57441755	21	0.9341	LARGE-GAIN	FOCAL	1	MYO1A
TCGA.CK.5914.01A	12	57422874	57457802	24	0.91	LARGE-GAIN	FOCAL	2	"MYO1A,TMEM194A"
TCGA.AA.A00N.01A	12	57501349	57560665	17	0.6792	LARGE-GAIN	FOCAL	2	"LRP1,STAT6"
TCGA.AG.3909.01A	12	57501349	57567526	20	0.7456	LARGE-GAIN	FOCAL	2	"LRP1,STAT6"
TCGA.AA.A024.01A	12	57569214	57570864	3	2.6929	LARGE-GAIN	FOCAL	1	LRP1
TCGA.AG.A015.01A	12	57570864	57578605	13	0.9484	LARGE-GAIN	FOCAL	1	LRP1
TCGA.AA.A02E.01A	12	57572656	57581002	11	1.0644	LARGE-GAIN	FOCAL	1	LRP1
TCGA.AG.A015.01A	12	57594435	57601779	7	0.8655	LARGE-GAIN	FOCAL	1	LRP1
TCGA.AG.3906.01A	12	57598164	57638647	25	0.8689	LARGE-GAIN	FOCAL	5	"LRP1,NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.A6.3808.01A	12	57625524	57859335	48	0.7707	LARGE-GAIN	FOCAL	7	"GLI1,INHBC,INHBE,NDUFA4L2,R3HDM2,SHMT2,STAC3"
TCGA.AA.3930.01A	12	57638647	57666187	17	0.8883	LARGE-GAIN	FOCAL	2	"R3HDM2,STAC3"
TCGA.AA.A00N.01A	12	57643289	57652623	6	0.6834	LARGE-GAIN	FOCAL	2	"R3HDM2,STAC3"
TCGA.AG.3909.01A	12	57643289	57677555	13	1.0694	LARGE-GAIN	FOCAL	2	"R3HDM2,STAC3"
TCGA.CK.5914.01A	12	57643289	57682600	15	1.2558	LARGE-GAIN	FOCAL	2	"R3HDM2,STAC3"
TCGA.AA.A01Q.01A	12	57643289	57828639	14	0.8082	LARGE-GAIN	FOCAL	3	"INHBC,R3HDM2,STAC3"
TCGA.AA.A00N.01A	12	57660483	57677555	8	1.4912	LARGE-GAIN	FOCAL	1	R3HDM2
TCGA.AG.3906.01A	12	57882773	57891908	4	1.3063	LARGE-GAIN	FOCAL	1	MARS
TCGA.AG.3891.01A	12	57891908	57912894	12	1.0518	LARGE-GAIN	FOCAL	2	"DDIT3,MARS"
TCGA.AG.3906.01A	12	57892233	57912894	11	2.2755	LARGE-GAIN	FOCAL	2	"DDIT3,MARS"
TCGA.AG.3906.01A	12	57918037	57922669	7	1.5553	LARGE-GAIN	FOCAL	1	MBD6
TCGA.AG.3906.01A	12	57924416	57929251	8	0.965	LARGE-GAIN	FOCAL	1	DCTN2
TCGA.AG.A015.01A	12	58002801	58010516	12	0.7995	LARGE-GAIN	FOCAL	2	"ARHGEF25,DTX3"
TCGA.AA.A01K.01A	12	58016297	58018607	4	1.726	LARGE-GAIN	FOCAL	1	SLC26A10
TCGA.AG.3906.01A	12	58110183	58121720	10	1.4187	LARGE-GAIN	FOCAL	2	"AGAP2,OS9"
TCGA.AG.3891.01A	12	58110183	58144402	30	1.006	LARGE-GAIN	FOCAL	4	"AGAP2,CDK4,OS9,TSPAN31"
TCGA.AA.3967.01A	12	58111601	58127779	17	0.7971	LARGE-GAIN	FOCAL	2	"AGAP2,OS9"
TCGA.AG.3906.01A	12	58123385	58145236	17	2.1518	LARGE-GAIN	FOCAL	3	"AGAP2,CDK4,TSPAN31"
TCGA.AG.3909.01A	12	58204095	58220061	9	0.8591	LARGE-GAIN	FOCAL	2	"AVIL,CTDSP2"
TCGA.DY.A1DC	12	58524913	58539197	10	0.8322	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	12	62104095	62918834	32	0.7009	LARGE-GAIN	FOCAL	3	"FAM19A2,MON2,USP15"
TCGA.AA.A00N.01A	12	62147354	62797954	21	1.2219	LARGE-GAIN	FOCAL	2	"FAM19A2,USP15"
TCGA.AA.3509.01A	12	62719583	62860977	13	1.2132	LARGE-GAIN	FOCAL	2	"MON2,USP15"
TCGA.AZ.4684.01A	12	62719583	62860977	13	1.3661	LARGE-GAIN	FOCAL	2	"MON2,USP15"
TCGA.AA.A00N.01A	12	62918248	62954234	16	0.7594	LARGE-GAIN	FOCAL	1	MON2
TCGA.AA.3861.01A	12	63962972	64057480	18	2.6657	LARGE-GAIN	FOCAL	1	DPY19L2
TCGA.AA.3862.01A	12	63962972	64057480	18	2.4734	LARGE-GAIN	FOCAL	1	DPY19L2
TCGA.AA.A00N.01A	12	64377695	64536056	19	1.0252	LARGE-GAIN	FOCAL	1	SRGAP1
TCGA.AG.3906.01A	12	66620465	66641448	5	0.8704	LARGE-GAIN	FOCAL	1	IRAK3
TCGA.AA.A00N.01A	12	66696335	67706344	49	0.7221	LARGE-GAIN	FOCAL	3	"CAND1,GRIP1,HELB"
TCGA.AA.A00N.01A	12	68549086	68708769	15	0.7172	LARGE-GAIN	FOCAL	4	"IFNG,IL22,IL26,MDM1"
TCGA.DM.A1DB	12	69305457	69914517	226	0.7968	LARGE-GAIN	FOCAL	5	"CPM,CPSF6,FRS2,LYZ,YEATS4"
TCGA.AA.A00N.01A	12	70003735	70091389	12	0.8994	LARGE-GAIN	FOCAL	2	"BEST3,LRRC10"
TCGA.CK.5914.01A	12	70713011	70731122	6	1.0225	LARGE-GAIN	FOCAL	1	CNOT2
TCGA.AA.A00N.01A	12	70824223	70983772	25	0.9437	LARGE-GAIN	FOCAL	2	"KCNMB4,PTPRB"
TCGA.AA.A010.01A	12	70925764	70938295	8	0.8724	LARGE-GAIN	FOCAL	1	PTPRB
TCGA.AA.A00N.01A	12	71898333	72058226	46	0.7826	LARGE-GAIN	FOCAL	3	"LGR5,THAP2,ZFC3H1"
TCGA.AA.A00N.01A	12	72175747	75678694	61	0.6997	LARGE-GAIN	FOCAL	7	"ATXN7L3B,CAPS2,KCNC2,RAB21,TBC1D15,TPH2,TRHDE"
TCGA.DY.A1DC	12	73014916	73082469	21	0.7154	LARGE-GAIN	FOCAL	1	TRHDE
TCGA.DY.A1DC	12	73429578	73448994	16	0.7729	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	12	75149656	75164091	13	1.1121	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	12	75550188	75593240	14	0.7387	LARGE-GAIN	FOCAL	1	KCNC2
TCGA.AA.A00N.01A	12	78225191	80671889	90	0.7262	LARGE-GAIN	FOCAL	5	"NAV3,OTOGL,PAWR,PPP1R12A,SYT1"
TCGA.CK.5914.01A	12	78522456	79611298	23	0.7696	LARGE-GAIN	FOCAL	2	"NAV3,SYT1"
TCGA.CK.4948.01B	12	78562508	78598668	15	0.6919	LARGE-GAIN	FOCAL	1	NAV3
TCGA.AA.3509.01A	12	78579344	78592364	6	1.8772	LARGE-GAIN	FOCAL	1	NAV3
TCGA.AZ.4684.01A	12	78579344	78592364	6	1.9132	LARGE-GAIN	FOCAL	1	NAV3
TCGA.DY.A1DC	12	78925012	78955393	4	1.4712	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6811.01A	12	79522918	79534057	4	0.8288	LARGE-GAIN	FOCAL	1	SYT1
TCGA.DY.A1DC	12	80835124	80849327	6	1.0676	LARGE-GAIN	FOCAL	1	PTPRQ
TCGA.DY.A1DC	12	80881189	80893086	5	1.2056	LARGE-GAIN	FOCAL	1	PTPRQ
TCGA.CK.5914.01A	12	81676707	81799519	19	0.6915	LARGE-GAIN	FOCAL	1	PPFIA2
TCGA.CK.5914.01A	12	82752328	82850452	10	0.7638	LARGE-GAIN	FOCAL	1	METTL25
TCGA.A6.2678	12	83271416	83271661	4	1.2933	LARGE-GAIN	FOCAL	1	TMTC2
TCGA.AA.3531	12	83271416	83271661	4	1.1953	LARGE-GAIN	FOCAL	1	TMTC2
TCGA.AA.3861.01A	12	83358747	86383136	67	0.762	LARGE-GAIN	FOCAL	8	"ALX1,LRRIQ1,MGAT4C,NTS,RASSF9,SLC6A15,TMTC2,TSPAN19"
TCGA.DY.A1DC	12	83448631	83453619	4	1.0762	LARGE-GAIN	FOCAL	1	TMTC2
TCGA.DY.A1DC	12	83843006	83876913	26	0.9575	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	12	84792254	84800086	4	1.1771	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	12	85452064	85464043	3	1.5299	LARGE-GAIN	FOCAL	1	LRRIQ1
TCGA.DY.A1DC	12	85735977	85749415	8	1.1875	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	12	87212542	87242121	9	1.0388	LARGE-GAIN	FOCAL	1	MGAT4C
TCGA.DY.A1DC	12	87383258	87442479	9	0.8234	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	12	91073628	91085089	4	1.3835	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	12	91445487	91475044	16	1.1082	LARGE-GAIN	FOCAL	1	KERA
TCGA.CK.5914.01A	12	94690882	94706662	8	0.8653	LARGE-GAIN	FOCAL	2	"CEP83,PLXNC1"
TCGA.AG.3611.01A	12	95869796	95905634	8	0.6869	LARGE-GAIN	FOCAL	1	METAP2
TCGA.AG.A00Y.01A	12	96263218	96266004	2	4.2023	LARGE-GAIN	FOCAL	1	CCDC38
TCGA.AA.A00N.01A	12	96429092	97150188	43	0.7873	LARGE-GAIN	FOCAL	4	"CDK17,CFAP54,ELK3,LTA4H"
TCGA.CK.5914.01A	12	96653471	96674527	4	0.8936	LARGE-GAIN	FOCAL	2	"CDK17,ELK3"
TCGA.AG.3611.01A	12	96673952	96694009	12	0.7125	LARGE-GAIN	FOCAL	1	CDK17
TCGA.AA.3850	12	96834095	96904104	26	0.85485	LARGE-GAIN	FOCAL	1	CFAP54
TCGA.AA.A00N.01A	12	99194728	100551717	49	0.8142	LARGE-GAIN	FOCAL	3	"ANKS1B,FAM71C,UHRF1BP1L"
TCGA.AA.A00N.01A	12	100995369	101520615	31	0.7666	LARGE-GAIN	FOCAL	2	"ANO4,GAS2L3"
TCGA.AA.3660	12	101580234	101640893	27	0.7235	LARGE-GAIN	FOCAL	1	SLC5A8
TCGA.AA.A00N.01A	12	102542066	104015755	42	0.9484	LARGE-GAIN	FOCAL	7	"ASCL1,C12orf42,IGF1,PAH,PARPBP,PMCH,STAB2"
TCGA.DM.A28M.01A	12	102589119	102591299	5	1.8966	LARGE-GAIN	FOCAL	2	"PARPBP,PMCH"
TCGA.CK.5914.01A	12	102589119	103271188	21	0.7195	LARGE-GAIN	FOCAL	4	"IGF1,PAH,PARPBP,PMCH"
TCGA.AA.3509.01A	12	102589682	102590730	3	2.4954	LARGE-GAIN	FOCAL	2	"PARPBP,PMCH"
TCGA.AZ.4684.01A	12	102589682	102590730	3	2.5303	LARGE-GAIN	FOCAL	2	"PARPBP,PMCH"
TCGA.CK.5914.01A	12	104109530	104171555	27	0.9892	LARGE-GAIN	FOCAL	2	"NT5DC3,STAB2"
TCGA.AG.3909.01A	12	104134380	104152859	10	1.0846	LARGE-GAIN	FOCAL	1	STAB2
TCGA.AA.A00N.01A	12	104134380	104171555	15	1.3807	LARGE-GAIN	FOCAL	2	"NT5DC3,STAB2"
TCGA.AA.A01Q.01A	12	104134380	104171555	15	0.6847	LARGE-GAIN	FOCAL	2	"NT5DC3,STAB2"
TCGA.AG.3906.01A	12	104516967	104645293	5	0.8103	LARGE-GAIN	FOCAL	2	"NFYB,TXNRD1"
TCGA.AA.3844	12	104576196	104577493	3	1.7824	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	12	104576196	104641984	20	0.9855	LARGE-GAIN	FOCAL	1	TXNRD1
TCGA.AG.3906.01A	12	104709508	104725265	8	1.1766	LARGE-GAIN	FOCAL	1	TXNRD1
TCGA.DM.A28M.01A	12	105280054	105282764	2	2.1842	LARGE-GAIN	FOCAL	1	SLC41A2
TCGA.AZ.4684.01A	12	105504874	105543356	18	0.9628	LARGE-GAIN	FOCAL	1	KIAA1033
TCGA.AA.A00N.01A	12	105520890	105600787	30	0.7788	LARGE-GAIN	FOCAL	2	"APPL2,KIAA1033"
TCGA.DM.A28M.01A	12	105536857	105540178	4	1.7895	LARGE-GAIN	FOCAL	1	KIAA1033
TCGA.AA.A00N.01A	12	106460553	106480465	6	1.4198	LARGE-GAIN	FOCAL	1	NUAK1
TCGA.AG.A015.01A	12	106820963	106977044	17	0.7057	LARGE-GAIN	FOCAL	2	"POLR3B,RFX4"
TCGA.AG.3906.01A	12	108136929	108154188	7	0.7244	LARGE-GAIN	FOCAL	1	PRDM4
TCGA.AA.A00N.01A	12	108589558	108917187	13	0.9129	LARGE-GAIN	FOCAL	4	"CMKLR1,FICD,SART3,WSCD2"
TCGA.AA.A010.01A	12	108589558	108919858	16	0.8732	LARGE-GAIN	FOCAL	4	"CMKLR1,FICD,SART3,WSCD2"
TCGA.CK.5914.01A	12	108618477	108687301	7	1.0828	LARGE-GAIN	FOCAL	2	"CMKLR1,WSCD2"
TCGA.AG.3909.01A	12	109216993	109332554	21	0.8417	LARGE-GAIN	FOCAL	3	"DAO,SSH1,SVOP"
TCGA.AA.A00N.01A	12	109278755	109490429	20	0.8932	LARGE-GAIN	FOCAL	3	"DAO,SVOP,USP30"
TCGA.AA.A00N.01A	12	109577193	109870652	74	0.7394	LARGE-GAIN	FOCAL	3	"ACACB,FOXN4,MYO1H"
TCGA.AA.A010.01A	12	110471551	110503571	7	0.7169	LARGE-GAIN	FOCAL	2	"ANKRD13A,C12orf76"
TCGA.AA.A010.01A	12	110760740	111120943	87	0.6958	LARGE-GAIN	FOCAL	10	"ANAPC7,ARPC3,ATP2A2,FAM216A,GPN3,HVCN1,PPTC7,RAD9B,TCTN1,VPS29"
TCGA.AA.A00N.01A	12	110764146	110811899	14	0.895	LARGE-GAIN	FOCAL	2	"ANAPC7,ATP2A2"
TCGA.AG.3909.01A	12	110939756	110940071	2	0.9363	LARGE-GAIN	FOCAL	2	"RAD9B,VPS29"
TCGA.AG.A01W.01A	12	111073968	111093266	12	0.6823	LARGE-GAIN	FOCAL	2	"HVCN1,TCTN1"
TCGA.AG.3909.01A	12	111087946	111098929	4	0.8486	LARGE-GAIN	FOCAL	1	HVCN1
TCGA.AG.3909.01A	12	111318882	111741964	22	0.7714	LARGE-GAIN	FOCAL	3	"CCDC63,CUX2,MYL2"
TCGA.AG.3594	12	111916280	112121869	21	1.1379	LARGE-GAIN	FOCAL	2	"ATXN2,BRAP"
TCGA.AG.3891.01A	12	112110416	112165719	12	0.73	LARGE-GAIN	FOCAL	2	"ACAD10,BRAP"
TCGA.AG.3906.01A	12	112139916	112174618	10	0.8603	LARGE-GAIN	FOCAL	1	ACAD10
TCGA.AG.A01W.01A	12	112385329	112393465	5	0.6985	LARGE-GAIN	FOCAL	1	TMEM116
TCGA.AA.A010.01A	12	112600144	112630362	17	0.9565	LARGE-GAIN	FOCAL	1	HECTD4
TCGA.AA.A00N.01A	12	112645650	112672859	15	0.8184	LARGE-GAIN	FOCAL	1	HECTD4
TCGA.CK.5914.01A	12	112645650	112676815	18	0.7108	LARGE-GAIN	FOCAL	1	HECTD4
TCGA.AA.A00N.01A	12	112673271	112685209	7	1.4262	LARGE-GAIN	FOCAL	1	HECTD4
TCGA.AA.A010.01A	12	112701856	112720873	10	0.8882	LARGE-GAIN	FOCAL	1	HECTD4
TCGA.AA.3941	12	113124576	113152205	14	0.7273	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	12	113266063	113348834	21	0.8505	LARGE-GAIN	FOCAL	2	"OAS1,RPH3A"
TCGA.CK.5914.01A	12	113266063	113446842	51	0.7798	LARGE-GAIN	FOCAL	4	"OAS1,OAS2,OAS3,RPH3A"
TCGA.AA.A00N.01A	12	113303172	113328617	13	1.5989	LARGE-GAIN	FOCAL	1	RPH3A
TCGA.AA.A00N.01A	12	113332323	113448132	36	0.7579	LARGE-GAIN	FOCAL	4	"OAS1,OAS2,OAS3,RPH3A"
TCGA.AA.A010.01A	12	113379323	113407713	15	1.0611	LARGE-GAIN	FOCAL	1	OAS3
TCGA.AG.3909.01A	12	113398847	113515221	21	0.8344	LARGE-GAIN	FOCAL	3	"DTX1,OAS2,OAS3"
TCGA.AA.A00N.01A	12	113698134	113707529	5	0.9091	LARGE-GAIN	FOCAL	1	TPCN1
TCGA.CK.5914.01A	12	113865736	113900958	8	1.1096	LARGE-GAIN	FOCAL	2	"LHX5,SDSL"
TCGA.AA.A00N.01A	12	116420950	116446155	13	1.1713	LARGE-GAIN	FOCAL	1	MED13L
TCGA.AG.3906.01A	12	117615278	117653021	4	1.1473	LARGE-GAIN	FOCAL	2	"FBXO21,NOS1"
TCGA.AG.3891.01A	12	117624243	117627000	2	1.2125	LARGE-GAIN	FOCAL	1	FBXO21
TCGA.CK.5914.01A	12	117653021	117996243	42	0.923	LARGE-GAIN	FOCAL	2	"KSR2,NOS1"
TCGA.AG.3909.01A	12	117653021	118298068	48	0.8697	LARGE-GAIN	FOCAL	2	"KSR2,NOS1"
TCGA.AA.A00N.01A	12	117657828	118298068	46	1.3832	LARGE-GAIN	FOCAL	2	"KSR2,NOS1"
TCGA.AG.3891.01A	12	118504373	118509117	4	1.0079	LARGE-GAIN	FOCAL	1	VSIG10
TCGA.AG.3906.01A	12	118673316	118693201	6	0.7556	LARGE-GAIN	FOCAL	1	TAOK3
TCGA.AA.A00N.01A	12	120168268	120222717	17	0.8213	LARGE-GAIN	FOCAL	1	CIT
TCGA.AG.A015.01A	12	120213515	120222717	6	0.7712	LARGE-GAIN	FOCAL	1	CIT
TCGA.AG.A01W.01A	12	120362975	120367413	7	0.8043	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	12	120572067	120602101	30	0.9487	LARGE-GAIN	FOCAL	1	GCN1L1
TCGA.AA.A00N.01A	12	120572067	120607923	32	0.727	LARGE-GAIN	FOCAL	1	GCN1L1
TCGA.AA.A01K.01A	12	120594234	120595604	3	5.6461	LARGE-GAIN	FOCAL	1	GCN1L1
TCGA.AA.A010.01A	12	121416532	121605274	27	0.8894	LARGE-GAIN	FOCAL	4	"C12orf43,HNF1A,OASL,P2RX7"
TCGA.AG.3909.01A	12	121454094	121622086	19	0.8008	LARGE-GAIN	FOCAL	3	"C12orf43,OASL,P2RX7"
TCGA.AA.A00N.01A	12	121469198	121603114	9	1.3659	LARGE-GAIN	FOCAL	2	"OASL,P2RX7"
TCGA.AG.3574	12	121641624	121646015	3	2.7418	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	12	121898466	121910897	16	0.7449	LARGE-GAIN	FOCAL	1	KDM2B
TCGA.AG.3909.01A	12	122286847	122332596	8	0.9018	LARGE-GAIN	FOCAL	2	"HPD,PSMD9"
TCGA.AZ.4684.01A	12	122966060	122967760	4	0.8241	LARGE-GAIN	FOCAL	1	ZCCHC8
TCGA.AA.A010.01A	12	123380451	123430521	8	1.0635	LARGE-GAIN	FOCAL	2	"ABCB9,VPS37B"
TCGA.AG.3909.01A	12	123920620	124069137	11	0.8219	LARGE-GAIN	FOCAL	4	"RILPL1,RILPL2,SNRNP35,TMED2"
TCGA.AA.A00N.01A	12	123950037	123983917	7	1.2657	LARGE-GAIN	FOCAL	2	"RILPL1,SNRNP35"
TCGA.AA.A010.01A	12	124322951	124345517	10	1.0993	LARGE-GAIN	FOCAL	1	DNAH10
TCGA.AA.3939.01A	12	124826340	124827522	2	3.3919	LARGE-GAIN	FOCAL	1	NCOR2
TCGA.AA.A00N.01A	12	124979654	125302049	13	0.9584	LARGE-GAIN	FOCAL	2	"NCOR2,SCARB1"
TCGA.AA.A010.01A	12	125263026	125348093	13	0.8467	LARGE-GAIN	FOCAL	1	SCARB1
TCGA.AA.A00N.01A	12	125618482	129189984	22	1.1015	LARGE-GAIN	FOCAL	3	"AACS,TMEM132B,TMEM132C"
TCGA.AA.A00N.01A	12	129566311	130184313	6	1.273	LARGE-GAIN	FOCAL	1	TMEM132D
TCGA.AG.3909.01A	12	129694027	130015557	3	0.8966	LARGE-GAIN	FOCAL	1	TMEM132D
TCGA.DM.A1HB	12	131570041	131573890	5	1.4622	LARGE-GAIN	FOCAL	1	ADGRD1
TCGA.D5.6539	12	132008802	132017350	5	1.206	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4681	12	132014205	132022560	6	0.9992	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3862.01A	12	132502049	132588534	28	0.8621	LARGE-GAIN	FOCAL	1	EP400
TCGA.AM.5820	12	132621623	133182407	30	0.9351	LARGE-GAIN	FOCAL	5	"DDX51,FBRSL1,GALNT9,LRCOL1,NOC4L"
TCGA.AG.3906.01A	12	133195986	133218181	14	0.867	LARGE-GAIN	FOCAL	2	"P2RX2,POLE"
TCGA.AA.3939.01A	12	133201234	133220373	13	0.7532	LARGE-GAIN	FOCAL	1	POLE
TCGA.AA.3939.01A	12	133277784	133281141	2	1.1217	LARGE-GAIN	FOCAL	1	PXMP2
TCGA.AA.3967.01A	12	133304567	133317942	6	1.0697	LARGE-GAIN	FOCAL	1	ANKLE2
TCGA.AG.3906.01A	12	133319692	133358834	11	0.7272	LARGE-GAIN	FOCAL	2	"ANKLE2,GOLGA3"
TCGA.AA.A00Q.01A	12	133768023	133778682	2	1.5551	LARGE-GAIN	FOCAL	1	ZNF268
TCGA.QG.A5Z1	13	19212261	19257567	7	0.8407	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6460	13	19212261	19723510	132	0.7185	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3867	13	19212261	19834618	173	0.781	LARGE-GAIN	FOCAL	1	TUBA3C
TCGA.AA.3941	13	19212261	19889996	188	0.7223	LARGE-GAIN	FOCAL	1	TUBA3C
TCGA.DM.A28E	13	19212261	20887022	403	1.0237	LARGE-GAIN	FOCAL	9	"GJA3,GJB2,GJB6,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.CM.5862	13	19212261	21103839	540	1.1496	LARGE-GAIN	FOCAL	10	"CRYL1,GJA3,GJB2,GJB6,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AG.A026	13	19417085	19450805	5	0.907	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6926	13	19571628	19604484	20	0.9324	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	13	19581841	19596554	12	0.7241	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A026	13	19581841	19599043	13	0.7594	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3583	13	19583662	19602538	13	0.8137	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	13	19600070	19761243	10	0.967	LARGE-GAIN	FOCAL	1	TUBA3C
TCGA.AG.A01L.01A	13	19600070	20077283	27	0.8072	LARGE-GAIN	FOCAL	2	"TPTE2,TUBA3C"
TCGA.AG.3909.01A	13	19600070	20207858	28	0.728	LARGE-GAIN	FOCAL	3	"MPHOSPH8,TPTE2,TUBA3C"
TCGA.AA.3862.01A	13	19600070	20233105	34	1.458	LARGE-GAIN	FOCAL	3	"MPHOSPH8,TPTE2,TUBA3C"
TCGA.AA.3861.01A	13	19600070	20235790	34	1.0756	LARGE-GAIN	FOCAL	3	"MPHOSPH8,TPTE2,TUBA3C"
TCGA.AA.A00D.01A	13	19600070	20796805	42	0.7444	LARGE-GAIN	FOCAL	9	"GJA3,GJB2,GJB6,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AG.A02X.01A	13	19600070	21086535	87	1.8336	LARGE-GAIN	FOCAL	10	"CRYL1,GJA3,GJB2,GJB6,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.CK.5914.01A	13	19997154	20056601	15	1.6883	LARGE-GAIN	FOCAL	1	TPTE2
TCGA.DM.A28F	13	20101963	20146500	15	0.8655	LARGE-GAIN	FOCAL	1	TPTE2
TCGA.CK.5914.01A	13	20277283	20304332	4	1.7596	LARGE-GAIN	FOCAL	1	PSPC1
TCGA.CK.5914.01A	13	20315661	20333413	3	1.1116	LARGE-GAIN	FOCAL	1	PSPC1
TCGA.AG.3891.01A	13	20315661	20425780	11	0.8471	LARGE-GAIN	FOCAL	2	"PSPC1,ZMYM5"
TCGA.AG.3906.01A	13	20325364	20425780	10	1.0369	LARGE-GAIN	FOCAL	2	"PSPC1,ZMYM5"
TCGA.AG.A01W.01A	13	20453586	20463363	5	0.7613	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	13	20576963	20716068	23	0.9888	LARGE-GAIN	FOCAL	2	"GJA3,ZMYM2"
TCGA.AZ.4684.01A	13	20600700	20656139	15	1.0726	LARGE-GAIN	FOCAL	1	ZMYM2
TCGA.AG.A00C.01A	13	20763000	21171106	17	0.8242	LARGE-GAIN	FOCAL	4	"CRYL1,GJB2,GJB6,IFT88"
TCGA.AA.3712	13	20775567	21495508	247	0.6821	LARGE-GAIN	FOCAL	6	"CRYL1,GJB6,IFT88,IL17D,N6AMT2,XPO4"
TCGA.DC.6154	13	20903918	20945587	41	1.6878	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	13	21006214	21295753	31	0.9442	LARGE-GAIN	FOCAL	3	"CRYL1,IFT88,IL17D"
TCGA.CM.5862	13	21112934	21753802	154	1.7508	LARGE-GAIN	FOCAL	8	"IFT88,IL17D,LATS2,MRPL57,N6AMT2,SAP18,SKA3,XPO4"
TCGA.AA.A00D.01A	13	21142105	21311806	29	1.0221	LARGE-GAIN	FOCAL	3	"IFT88,IL17D,N6AMT2"
TCGA.AG.A02X.01A	13	21148470	21374933	39	2.2656	LARGE-GAIN	FOCAL	4	"IFT88,IL17D,N6AMT2,XPO4"
TCGA.DC.6154	13	21160491	21530330	78	2.0005	LARGE-GAIN	FOCAL	4	"IFT88,IL17D,N6AMT2,XPO4"
TCGA.CK.5914.01A	13	21331564	21370178	7	0.8055	LARGE-GAIN	FOCAL	2	"N6AMT2,XPO4"
TCGA.CK.5914.01A	13	21370886	21555558	20	1.2949	LARGE-GAIN	FOCAL	2	"LATS2,XPO4"
TCGA.AA.3509.01A	13	21374258	21417882	11	1.836	LARGE-GAIN	FOCAL	1	XPO4
TCGA.AZ.4684.01A	13	21374258	21417882	11	1.1983	LARGE-GAIN	FOCAL	1	XPO4
TCGA.AA.A00N.01A	13	21381549	21416987	8	1.0019	LARGE-GAIN	FOCAL	1	XPO4
TCGA.AG.A02X.01A	13	21395796	22275302	53	1.9191	LARGE-GAIN	FOCAL	8	"FGF9,LATS2,MICU2,MRPL57,SAP18,SKA3,XPO4,ZDHHC20"
TCGA.DM.A1D0	13	21404822	21855293	128	0.8307	LARGE-GAIN	FOCAL	5	"LATS2,MRPL57,SAP18,SKA3,XPO4"
TCGA.AA.3509.01A	13	21429739	23903492	63	0.8699	LARGE-GAIN	FOCAL	10	"FGF9,LATS2,MICU2,MRPL57,SACS,SAP18,SGCG,SKA3,XPO4,ZDHHC20"
TCGA.DC.6154	13	21532129	21628006	27	1.6674	LARGE-GAIN	FOCAL	1	LATS2
TCGA.AG.3906.01A	13	21555558	21565362	5	1.5362	LARGE-GAIN	FOCAL	1	LATS2
TCGA.DC.6154	13	21638359	21676838	12	2.2152	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	13	21714640	21714988	2	0.8429	LARGE-GAIN	FOCAL	1	SAP18
TCGA.AA.A00L.01A	13	21714640	23869494	32	0.7922	LARGE-GAIN	FOCAL	7	"FGF9,MICU2,MRPL57,SAP18,SGCG,SKA3,ZDHHC20"
TCGA.CM.5862	13	21777767	22355767	210	1.1421	LARGE-GAIN	FOCAL	3	"FGF9,MICU2,ZDHHC20"
TCGA.F5.6571	13	22076490	22363252	106	1.2651	LARGE-GAIN	FOCAL	2	"FGF9,MICU2"
TCGA.AA.3941	13	22321689	22724817	228	0.8173	LARGE-GAIN	FOCAL	0	None
TCGA.CM.5862	13	22356171	22717879	197	1.7063	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	22374699	22422359	26	1.6783	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	22422459	23117816	365	1.2996	LARGE-GAIN	FOCAL	0	None
TCGA.CM.5862	13	22718107	24509638	819	1.1808	LARGE-GAIN	FOCAL	6	"C1QTNF9B,C1QTNF9B-AS1,MIPEP,SACS,SGCG,TNFRSF19"
TCGA.AA.3941	13	22765218	22866230	72	0.8436	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3968	13	22894371	23697920	322	0.7725	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	13	22958376	22980190	15	0.7767	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	13	22998575	23371473	155	0.6907	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	23127821	23135983	6	2.0146	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	23136835	23669665	207	1.3565	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3872	13	23248907	23254797	3	1.8633	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	13	23380774	23556440	43	0.9248	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	13	23568676	23585262	11	0.9255	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	23669872	24062734	206	0.9692	LARGE-GAIN	FOCAL	2	"SACS,SGCG"
TCGA.AZ.4684.01A	13	23904267	23914113	9	1.6221	LARGE-GAIN	FOCAL	1	SACS
TCGA.AA.3509.01A	13	23904267	23914873	10	2.1862	LARGE-GAIN	FOCAL	1	SACS
TCGA.DC.4745	13	23985390	24767910	436	0.9129	LARGE-GAIN	FOCAL	6	"C1QTNF9B,C1QTNF9B-AS1,MIPEP,SACS,SPATA13,TNFRSF19"
TCGA.AA.3968	13	23994217	24526686	252	0.9188	LARGE-GAIN	FOCAL	5	"C1QTNF9B,C1QTNF9B-AS1,MIPEP,SACS,TNFRSF19"
TCGA.F5.6571	13	24063855	24081254	11	1.3445	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	24084735	24092275	13	0.9755	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	24092327	24348158	109	1.4055	LARGE-GAIN	FOCAL	2	"MIPEP,TNFRSF19"
TCGA.DY.A0XA	13	24284724	24916076	377	0.7926	LARGE-GAIN	FOCAL	5	"C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,MIPEP,SPATA13"
TCGA.F5.6571	13	24350291	24474762	48	1.0063	LARGE-GAIN	FOCAL	3	"C1QTNF9B,C1QTNF9B-AS1,MIPEP"
TCGA.DM.A28F	13	24353244	24605799	115	1.8129	LARGE-GAIN	FOCAL	4	"C1QTNF9B,C1QTNF9B-AS1,MIPEP,SPATA13"
TCGA.F5.6571	13	24476072	24509638	21	1.4685	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	24516869	24659273	99	0.9489	LARGE-GAIN	FOCAL	1	SPATA13
TCGA.CM.5862	13	24516869	24737220	156	1.7686	LARGE-GAIN	FOCAL	1	SPATA13
TCGA.AA.3968	13	24527454	25602762	497	1.1761	LARGE-GAIN	FOCAL	6	"ATP12A,C1QTNF9,CENPJ,PARP4,RNF17,SPATA13"
TCGA.F5.6571	13	24660011	24850709	150	1.345	LARGE-GAIN	FOCAL	1	SPATA13
TCGA.AG.3909.01A	13	24796939	24860856	8	0.6958	LARGE-GAIN	FOCAL	1	SPATA13
TCGA.F5.6571	13	24853947	25336127	183	0.9488	LARGE-GAIN	FOCAL	4	"ATP12A,C1QTNF9,PARP4,SPATA13"
TCGA.AG.A014.01A	13	24860856	25744175	111	1.5336	LARGE-GAIN	FOCAL	8	"AMER2,ATP12A,C1QTNF9,CENPJ,PABPC3,PARP4,RNF17,SPATA13"
TCGA.AA.3930.01A	13	24890099	25020763	10	0.8855	LARGE-GAIN	FOCAL	2	"C1QTNF9,PARP4"
TCGA.AG.3909.01A	13	24995210	25052204	21	0.835	LARGE-GAIN	FOCAL	1	PARP4
TCGA.AA.3930.01A	13	25051787	25362086	39	0.8213	LARGE-GAIN	FOCAL	3	"ATP12A,PARP4,RNF17"
TCGA.AG.A00C.01A	13	25060267	25285432	29	0.891	LARGE-GAIN	FOCAL	2	"ATP12A,PARP4"
TCGA.AY.A54L.01A	13	25255672	26155919	126	1.1842	LARGE-GAIN	FOCAL	8	"AMER2,ATP12A,ATP8A2,CENPJ,MTMR6,NUPL1,PABPC3,RNF17"
TCGA.F5.6571	13	25349709	25617342	74	1.347	LARGE-GAIN	FOCAL	2	"CENPJ,RNF17"
TCGA.AA.A00Q.01A	13	25355970	25453297	29	0.8102	LARGE-GAIN	FOCAL	1	RNF17
TCGA.AA.A00F.01A	13	25451097	25715624	17	1.1276	LARGE-GAIN	FOCAL	3	"CENPJ,PABPC3,RNF17"
TCGA.AG.A00C.01A	13	25457296	25486750	13	0.9829	LARGE-GAIN	FOCAL	1	CENPJ
TCGA.AA.3968	13	25607968	26931412	540	0.757	LARGE-GAIN	FOCAL	8	"AMER2,ATP8A2,CDK8,MTMR6,NUPL1,PABPC3,RNF6,SHISA2"
TCGA.F5.6571	13	25620469	25710666	52	1.0316	LARGE-GAIN	FOCAL	1	PABPC3
TCGA.F5.6571	13	25711095	26000771	105	1.5066	LARGE-GAIN	FOCAL	4	"AMER2,ATP8A2,MTMR6,NUPL1"
TCGA.CK.5914.01A	13	25823323	25831286	5	1.2931	LARGE-GAIN	FOCAL	1	MTMR6
TCGA.AG.3909.01A	13	25823323	25835759	8	0.73	LARGE-GAIN	FOCAL	1	MTMR6
TCGA.CK.5914.01A	13	25893385	25894630	2	1.2199	LARGE-GAIN	FOCAL	1	NUPL1
TCGA.CK.5914.01A	13	25895095	25914064	9	1.8444	LARGE-GAIN	FOCAL	1	NUPL1
TCGA.CK.5914.01A	13	25946302	27745686	75	0.9722	LARGE-GAIN	FOCAL	7	"ATP8A2,CDK8,GPR12,RNF6,SHISA2,USP12,WASF3"
TCGA.F5.6571	13	26002508	26077537	32	0.9899	LARGE-GAIN	FOCAL	1	ATP8A2
TCGA.F5.6571	13	26092575	26273537	75	0.9604	LARGE-GAIN	FOCAL	1	ATP8A2
TCGA.AA.A00N.01A	13	26116040	26586618	28	0.8298	LARGE-GAIN	FOCAL	1	ATP8A2
TCGA.AG.3909.01A	13	26125439	26542662	25	1.0723	LARGE-GAIN	FOCAL	1	ATP8A2
TCGA.AA.3712	13	26209702	26226910	3	0.7877	LARGE-GAIN	FOCAL	1	ATP8A2
TCGA.F5.6571	13	26280093	26299813	16	1.2847	LARGE-GAIN	FOCAL	1	ATP8A2
TCGA.F5.6571	13	26300127	26898488	244	1.5373	LARGE-GAIN	FOCAL	4	"ATP8A2,CDK8,RNF6,SHISA2"
TCGA.DM.A1D0	13	26476361	26479363	4	1.0111	LARGE-GAIN	FOCAL	1	ATP8A2
TCGA.AA.3712	13	26562760	27068372	204	0.7173	LARGE-GAIN	FOCAL	4	"ATP8A2,CDK8,RNF6,SHISA2"
TCGA.DM.A1D0	13	26719101	26747254	21	0.8993	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00F.01A	13	26787954	26793596	4	1.139	LARGE-GAIN	FOCAL	1	RNF6
TCGA.AG.3909.01A	13	26828751	27216361	14	0.7593	LARGE-GAIN	FOCAL	2	"CDK8,WASF3"
TCGA.F5.6571	13	26906998	27217074	115	0.9325	LARGE-GAIN	FOCAL	2	"CDK8,WASF3"
TCGA.AA.3548	13	26911111	27308049	163	0.9658	LARGE-GAIN	FOCAL	2	"CDK8,WASF3"
TCGA.AA.A00N.01A	13	26911641	27259773	20	0.7916	LARGE-GAIN	FOCAL	2	"CDK8,WASF3"
TCGA.AA.3712	13	27075103	27555685	267	1.2979	LARGE-GAIN	FOCAL	2	"GPR12,WASF3"
TCGA.F5.6571	13	27225104	27520181	179	1.3684	LARGE-GAIN	FOCAL	2	"GPR12,WASF3"
TCGA.AA.3979	13	27257687	27641692	241	0.761	LARGE-GAIN	FOCAL	3	"GPR12,USP12,WASF3"
TCGA.AG.3742	13	27444932	27631627	132	0.7232	LARGE-GAIN	FOCAL	0	None
TCGA.AF.5654	13	27514916	27547340	25	1.4348	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	27523025	27711716	102	0.8898	LARGE-GAIN	FOCAL	1	USP12
TCGA.AA.3696	13	27528300	27543809	17	1.2793	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3531	13	27603847	27608866	6	1.0761	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A02H.01A	13	27643398	27649321	3	2.7679	LARGE-GAIN	FOCAL	1	USP12
TCGA.AG.3909.01A	13	27643398	27690614	7	0.776	LARGE-GAIN	FOCAL	1	USP12
TCGA.AA.A02H.01A	13	27663983	27847127	10	3.2716	LARGE-GAIN	FOCAL	3	"RASL11A,RPL21,USP12"
TCGA.AA.3860	13	27741143	28098501	144	1.1895	LARGE-GAIN	FOCAL	5	"GTF3A,MTIF3,RASL11A,RPL21,USP12"
TCGA.AG.A02X.01A	13	27827849	27830272	4	2.198	LARGE-GAIN	FOCAL	1	RPL21
TCGA.AA.A00F.01A	13	27827849	28014084	10	1.0794	LARGE-GAIN	FOCAL	4	"GTF3A,MTIF3,RASL11A,RPL21"
TCGA.AG.A00C.01A	13	27829330	28014084	13	0.8498	LARGE-GAIN	FOCAL	4	"GTF3A,MTIF3,RASL11A,RPL21"
TCGA.AG.A02X.01A	13	27845041	28004618	7	0.7246	LARGE-GAIN	FOCAL	2	"GTF3A,RASL11A"
TCGA.AA.A02H.01A	13	28001212	28014084	9	2.6041	LARGE-GAIN	FOCAL	2	"GTF3A,MTIF3"
TCGA.AA.3860	13	28102481	29007142	341	1.5816	LARGE-GAIN	FOCAL	9	"CDX2,FLT1,FLT3,GSX1,LNX2,PAN3,PDX1,POLR1D,URAD"
TCGA.CK.5914.01A	13	28122425	28143117	8	1.7922	LARGE-GAIN	FOCAL	1	LNX2
TCGA.AA.A00N.01A	13	28122425	28155387	9	0.8492	LARGE-GAIN	FOCAL	1	LNX2
TCGA.AA.A02H.01A	13	28122425	28155387	9	4.3116	LARGE-GAIN	FOCAL	1	LNX2
TCGA.AG.3909.01A	13	28122425	28155387	9	0.8426	LARGE-GAIN	FOCAL	1	LNX2
TCGA.DM.A28F	13	28147911	28555259	169	1.8791	LARGE-GAIN	FOCAL	6	"CDX2,GSX1,LNX2,PDX1,POLR1D,URAD"
TCGA.CK.5914.01A	13	28155387	28611285	26	0.7572	LARGE-GAIN	FOCAL	7	"CDX2,FLT3,GSX1,LNX2,PDX1,POLR1D,URAD"
TCGA.AA.A02H.01A	13	28196974	28751959	32	2.9006	LARGE-GAIN	FOCAL	7	"CDX2,FLT3,GSX1,PAN3,PDX1,POLR1D,URAD"
TCGA.EI.7004	13	28346593	28488123	72	0.6997	LARGE-GAIN	FOCAL	1	GSX1
TCGA.DC.6154	13	28393118	28488123	50	1.7727	LARGE-GAIN	FOCAL	0	None
TCGA.CM.5862	13	28402591	28576351	65	1.9046	LARGE-GAIN	FOCAL	3	"CDX2,PDX1,URAD"
TCGA.AA.3844	13	28488123	28519415	9	1.228	LARGE-GAIN	FOCAL	1	PDX1
TCGA.DC.6154	13	28512584	28519415	8	2.428	LARGE-GAIN	FOCAL	0	None
TCGA.EI.7004	13	28512584	28519415	8	1.3694	LARGE-GAIN	FOCAL	0	None
TCGA.DC.6154	13	28545267	28758592	68	1.7804	LARGE-GAIN	FOCAL	3	"FLT3,PAN3,URAD"
TCGA.CM.5862	13	28577034	28590967	9	1.1261	LARGE-GAIN	FOCAL	1	FLT3
TCGA.AG.3909.01A	13	28588549	28891587	42	0.9104	LARGE-GAIN	FOCAL	3	"FLT1,FLT3,PAN3"
TCGA.AA.3939.01A	13	28589242	28622374	12	1.0474	LARGE-GAIN	FOCAL	1	FLT3
TCGA.CM.5862	13	28591317	28685061	37	1.7531	LARGE-GAIN	FOCAL	1	FLT3
TCGA.AA.3930.01A	13	28592543	28748369	17	0.9583	LARGE-GAIN	FOCAL	2	"FLT3,PAN3"
TCGA.AY.A54L.01A	13	28607976	29252149	64	1.0908	LARGE-GAIN	FOCAL	4	"FLT1,FLT3,PAN3,POMP"
TCGA.CK.5914.01A	13	28622374	28880766	26	1.5773	LARGE-GAIN	FOCAL	3	"FLT1,FLT3,PAN3"
TCGA.AA.3712	13	28728025	28781774	10	1.1259	LARGE-GAIN	FOCAL	1	PAN3
TCGA.AA.3548	13	28734464	30307574	687	0.7642	LARGE-GAIN	FOCAL	6	"FLT1,MTUS2,PAN3,POMP,SLC46A3,SLC7A1"
TCGA.AA.A02H.01A	13	28771305	28880766	16	4.288	LARGE-GAIN	FOCAL	2	"FLT1,PAN3"
TCGA.F5.6571	13	28781774	28987060	85	0.899	LARGE-GAIN	FOCAL	2	"FLT1,PAN3"
TCGA.CK.5914.01A	13	28882936	29233222	29	0.9638	LARGE-GAIN	FOCAL	2	"FLT1,POMP"
TCGA.AA.A02H.01A	13	28882936	29600325	40	3.5486	LARGE-GAIN	FOCAL	4	"FLT1,MTUS2,POMP,SLC46A3"
TCGA.AG.A02X.01A	13	28901542	29855794	35	1.9166	LARGE-GAIN	FOCAL	4	"FLT1,MTUS2,POMP,SLC46A3"
TCGA.AG.3909.01A	13	28919552	29041002	13	0.887	LARGE-GAIN	FOCAL	1	FLT1
TCGA.F5.6571	13	28991456	29070572	33	1.3824	LARGE-GAIN	FOCAL	1	FLT1
TCGA.AG.A00C.01A	13	29041617	29291907	12	0.8789	LARGE-GAIN	FOCAL	3	"FLT1,POMP,SLC46A3"
TCGA.F5.6571	13	29080645	30271527	542	0.9502	LARGE-GAIN	FOCAL	4	"MTUS2,POMP,SLC46A3,SLC7A1"
TCGA.D5.6926	13	29410881	30827421	667	0.7494	LARGE-GAIN	FOCAL	4	"KATNAL1,MTUS2,SLC7A1,UBL3"
TCGA.AZ.4681	13	29475871	29529376	5	1.7822	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3531	13	29515874	29529376	3	1.1335	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4681	13	29529499	30271527	372	1.0462	LARGE-GAIN	FOCAL	2	"MTUS2,SLC7A1"
TCGA.DY.A0XA	13	29580357	30268733	347	0.7028	LARGE-GAIN	FOCAL	2	"MTUS2,SLC7A1"
TCGA.CK.5914.01A	13	30109914	30829584	17	1.2079	LARGE-GAIN	FOCAL	3	"KATNAL1,SLC7A1,UBL3"
TCGA.AZ.4681	13	30276370	30277350	3	2.4232	LARGE-GAIN	FOCAL	0	None
TCGA.DC.6157	13	30276370	30277350	3	1.5284	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	30276370	30277350	3	2.1552	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4681	13	30280575	32541520	994	1.1149	LARGE-GAIN	FOCAL	10	"ALOX5AP,B3GALTL,HMGB1,HSPH1,KATNAL1,MEDAG,RXFP2,TEX26,UBL3,USPL1"
TCGA.AG.A00C.01A	13	31035726	31195864	6	1.2319	LARGE-GAIN	FOCAL	2	"HMGB1,USPL1"
TCGA.CK.5914.01A	13	31204955	31338043	14	1.1899	LARGE-GAIN	FOCAL	2	"ALOX5AP,USPL1"
TCGA.CK.5914.01A	13	31711143	31722464	10	1.585	LARGE-GAIN	FOCAL	1	HSPH1
TCGA.DM.A28M.01A	13	31711143	31726942	14	1.0692	LARGE-GAIN	FOCAL	1	HSPH1
TCGA.AA.3509.01A	13	31711143	31728721	13	2.3018	LARGE-GAIN	FOCAL	1	HSPH1
TCGA.AZ.4684.01A	13	31711143	31728721	13	1.6202	LARGE-GAIN	FOCAL	1	HSPH1
TCGA.AA.3509.01A	13	31729613	32910374	109	1.1606	LARGE-GAIN	FOCAL	6	"B3GALTL,BRCA2,FRY,HSPH1,RXFP2,ZAR1L"
TCGA.AA.3982	13	31765138	31809939	14	0.7498	LARGE-GAIN	FOCAL	1	B3GALTL
TCGA.CK.5914.01A	13	31821110	32356750	22	1.2903	LARGE-GAIN	FOCAL	2	"B3GALTL,RXFP2"
TCGA.AG.3909.01A	13	31821110	32861928	87	0.8143	LARGE-GAIN	FOCAL	3	"B3GALTL,FRY,RXFP2"
TCGA.AA.3941	13	32316878	33745656	539	0.8025	LARGE-GAIN	FOCAL	9	"BRCA2,FRY,KL,N4BP2L1,N4BP2L2,PDS5B,RXFP2,STARD13,ZAR1L"
TCGA.CK.5914.01A	13	32360456	32731373	21	0.704	LARGE-GAIN	FOCAL	2	"FRY,RXFP2"
TCGA.AZ.4681	13	32545771	33221201	206	0.7775	LARGE-GAIN	FOCAL	6	"BRCA2,FRY,N4BP2L1,N4BP2L2,PDS5B,ZAR1L"
TCGA.CK.5914.01A	13	32735239	32869327	47	1.2318	LARGE-GAIN	FOCAL	1	FRY
TCGA.AA.A00F.01A	13	32890562	32905006	7	1.0786	LARGE-GAIN	FOCAL	1	BRCA2
TCGA.AA.A00D.01A	13	32890562	33016478	30	0.7711	LARGE-GAIN	FOCAL	3	"BRCA2,N4BP2L1,N4BP2L2"
TCGA.AG.3909.01A	13	32910374	32953859	15	0.7713	LARGE-GAIN	FOCAL	1	BRCA2
TCGA.AA.3509.01A	13	32911984	32918645	3	3.1812	LARGE-GAIN	FOCAL	1	BRCA2
TCGA.AZ.4684.01A	13	32911984	32918645	3	2.483	LARGE-GAIN	FOCAL	1	BRCA2
TCGA.AA.3509.01A	13	32928949	33257978	38	1.1334	LARGE-GAIN	FOCAL	4	"BRCA2,N4BP2L1,N4BP2L2,PDS5B"
TCGA.CK.5914.01A	13	32928949	33316692	50	0.9379	LARGE-GAIN	FOCAL	4	"BRCA2,N4BP2L1,N4BP2L2,PDS5B"
TCGA.AA.A00N.01A	13	33091922	33268304	18	0.7194	LARGE-GAIN	FOCAL	2	"N4BP2L2,PDS5B"
TCGA.CM.5862	13	33123515	33520119	107	1.7079	LARGE-GAIN	FOCAL	1	PDS5B
TCGA.AA.A017.01A	13	33222873	33686838	43	1.0173	LARGE-GAIN	FOCAL	3	"KL,PDS5B,STARD13"
TCGA.AA.A02H.01A	13	33261224	33686838	34	1.1185	LARGE-GAIN	FOCAL	3	"KL,PDS5B,STARD13"
TCGA.AA.3509.01A	13	33261224	36180516	101	1.605	LARGE-GAIN	FOCAL	6	"KL,MAB21L1,NBEA,PDS5B,RFC3,STARD13"
TCGA.AZ.4684.01A	13	33261224	36180516	101	1.0241	LARGE-GAIN	FOCAL	6	"KL,MAB21L1,NBEA,PDS5B,RFC3,STARD13"
TCGA.AA.A00N.01A	13	33316692	36026202	82	0.8328	LARGE-GAIN	FOCAL	5	"KL,NBEA,PDS5B,RFC3,STARD13"
TCGA.CK.5914.01A	13	33320068	33590578	12	1.709	LARGE-GAIN	FOCAL	2	"KL,PDS5B"
TCGA.AG.3909.01A	13	33327453	34392263	32	0.8767	LARGE-GAIN	FOCAL	4	"KL,PDS5B,RFC3,STARD13"
TCGA.G4.6295	13	33393341	33413907	6	0.9547	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	13	33627867	35516906	31	1.16	LARGE-GAIN	FOCAL	4	"KL,NBEA,RFC3,STARD13"
TCGA.AA.3941	13	33754972	33804463	40	0.9274	LARGE-GAIN	FOCAL	1	STARD13
TCGA.G4.6626	13	33795427	34131101	117	0.6949	LARGE-GAIN	FOCAL	1	STARD13
TCGA.AF.A56N	13	34198563	34578332	202	0.6837	LARGE-GAIN	FOCAL	2	"RFC3,STARD13"
TCGA.AG.A01L.01A	13	34399879	34410189	6	1.5126	LARGE-GAIN	FOCAL	1	RFC3
TCGA.AA.A017.01A	13	34399879	35926267	43	1.3048	LARGE-GAIN	FOCAL	2	"NBEA,RFC3"
TCGA.AA.A02H.01A	13	34399879	36006369	44	1.2959	LARGE-GAIN	FOCAL	2	"NBEA,RFC3"
TCGA.AA.3941	13	34749255	34851979	32	0.6836	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	13	35615063	36006369	37	1.779	LARGE-GAIN	FOCAL	1	NBEA
TCGA.AG.3909.01A	13	35619401	36026202	35	0.7208	LARGE-GAIN	FOCAL	1	NBEA
TCGA.F5.6702	13	35677704	36311117	180	0.6938	LARGE-GAIN	FOCAL	2	"MAB21L1,NBEA"
TCGA.AA.A010.01A	13	36006369	36050714	6	0.8951	LARGE-GAIN	FOCAL	2	"MAB21L1,NBEA"
TCGA.CK.5914.01A	13	36124577	36223755	11	0.8989	LARGE-GAIN	FOCAL	1	NBEA
TCGA.AG.3909.01A	13	36124577	36686054	35	0.8325	LARGE-GAIN	FOCAL	2	"DCLK1,NBEA"
TCGA.AA.3941	13	36185924	36213630	9	1.0739	LARGE-GAIN	FOCAL	1	NBEA
TCGA.AA.3941	13	36236427	36311061	41	0.8219	LARGE-GAIN	FOCAL	1	NBEA
TCGA.CK.5914.01A	13	36348625	36822684	31	1.2457	LARGE-GAIN	FOCAL	4	"CCDC169,CCDC169-SOHLH2,DCLK1,SOHLH2"
TCGA.AA.3941	13	36468457	36612464	82	0.698	LARGE-GAIN	FOCAL	1	DCLK1
TCGA.AF.2693	13	36653922	36744799	43	0.7139	LARGE-GAIN	FOCAL	3	"CCDC169-SOHLH2,DCLK1,SOHLH2"
TCGA.DM.A28F	13	36733379	36737578	5	1.3336	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	36755178	36796535	10	0.7664	LARGE-GAIN	FOCAL	2	"CCDC169-SOHLH2,SOHLH2"
TCGA.AG.A014.01A	13	37011717	37015227	5	2.9009	LARGE-GAIN	FOCAL	1	CCNA1
TCGA.AA.3941	13	37102218	37106632	7	0.7803	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	37106632	37119109	9	1.4672	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	13	37337849	37579479	70	0.9632	LARGE-GAIN	FOCAL	4	"ALG5,EXOSC8,RFXAP,SMAD9"
TCGA.AG.3909.01A	13	37422762	37546067	9	0.7269	LARGE-GAIN	FOCAL	2	"ALG5,SMAD9"
TCGA.CK.5914.01A	13	37591334	37614522	13	1.5669	LARGE-GAIN	FOCAL	1	SUPT20H
TCGA.AA.3509.01A	13	37600270	38934840	47	1.8543	LARGE-GAIN	FOCAL	5	"CSNK1A1L,POSTN,SUPT20H,TRPC4,UFM1"
TCGA.AZ.4684.01A	13	37600270	38934840	47	1.2284	LARGE-GAIN	FOCAL	5	"CSNK1A1L,POSTN,SUPT20H,TRPC4,UFM1"
TCGA.AA.A00N.01A	13	37678793	38923990	32	0.9707	LARGE-GAIN	FOCAL	4	"CSNK1A1L,POSTN,TRPC4,UFM1"
TCGA.A6.6649	13	37850568	37862440	6	0.9404	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	13	38137387	38923990	31	0.7351	LARGE-GAIN	FOCAL	3	"POSTN,TRPC4,UFM1"
TCGA.DM.A28M.01A	13	38143851	38148648	4	1.6783	LARGE-GAIN	FOCAL	1	POSTN
TCGA.CK.5914.01A	13	38153961	38923990	22	1.2646	LARGE-GAIN	FOCAL	3	"POSTN,TRPC4,UFM1"
TCGA.DY.A1DC	13	38336233	38350192	9	1.5453	LARGE-GAIN	FOCAL	1	TRPC4
TCGA.DM.A28F	13	38386763	38394250	3	1.6054	LARGE-GAIN	FOCAL	1	TRPC4
TCGA.AG.3906.01A	13	38932203	38934840	3	0.7445	LARGE-GAIN	FOCAL	1	UFM1
TCGA.AA.3509.01A	13	39261462	40261600	65	1.2007	LARGE-GAIN	FOCAL	6	"COG6,FREM2,LHFP,NHLRC3,PROSER1,STOML3"
TCGA.DM.A28F	13	39323405	39516064	90	1.626	LARGE-GAIN	FOCAL	1	FREM2
TCGA.AG.3909.01A	13	39338424	39433393	12	0.8152	LARGE-GAIN	FOCAL	1	FREM2
TCGA.CK.5914.01A	13	39338424	39438385	14	1.4069	LARGE-GAIN	FOCAL	1	FREM2
TCGA.AA.A00N.01A	13	39338424	39591560	32	0.7614	LARGE-GAIN	FOCAL	3	"FREM2,PROSER1,STOML3"
TCGA.AG.3909.01A	13	39454414	39591560	11	0.7107	LARGE-GAIN	FOCAL	3	"FREM2,PROSER1,STOML3"
TCGA.DM.A28F	13	39516088	39649039	57	2.005	LARGE-GAIN	FOCAL	3	"NHLRC3,PROSER1,STOML3"
TCGA.AA.A00F.01A	13	39591560	39621773	12	0.9882	LARGE-GAIN	FOCAL	2	"NHLRC3,PROSER1"
TCGA.CK.5914.01A	13	39918036	41495571	40	0.9742	LARGE-GAIN	FOCAL	5	"COG6,FOXO1,LHFP,MRPS31,SLC25A15"
TCGA.DM.A28F	13	39980828	39999419	12	1.6566	LARGE-GAIN	FOCAL	1	LHFP
TCGA.AF.2693	13	40091135	40469164	128	0.7239	LARGE-GAIN	FOCAL	2	"COG6,LHFP"
TCGA.A6.5660	13	40224862	40311299	20	1.3952	LARGE-GAIN	FOCAL	1	COG6
TCGA.AA.3509.01A	13	40263832	40301547	7	2.5206	LARGE-GAIN	FOCAL	1	COG6
TCGA.AZ.4684.01A	13	40263832	40301547	7	1.9648	LARGE-GAIN	FOCAL	1	COG6
TCGA.AA.3509.01A	13	40325066	41133663	3	1.3069	LARGE-GAIN	FOCAL	2	"COG6,FOXO1"
TCGA.AZ.4684.01A	13	40325066	41133663	3	0.6927	LARGE-GAIN	FOCAL	2	"COG6,FOXO1"
TCGA.DM.A28F	13	41019164	41025183	4	1.2514	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	13	41041147	41044339	4	1.3889	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	13	41239713	41899797	51	0.8918	LARGE-GAIN	FOCAL	9	"ELF1,FOXO1,KBTBD6,KBTBD7,MRPS31,MTRF1,NAA16,SLC25A15,WBP4"
TCGA.AA.A00F.01A	13	41323242	41910735	52	0.9032	LARGE-GAIN	FOCAL	8	"ELF1,KBTBD6,KBTBD7,MRPS31,MTRF1,NAA16,SLC25A15,WBP4"
TCGA.AG.A00C.01A	13	41515040	41656812	15	0.8395	LARGE-GAIN	FOCAL	2	"ELF1,WBP4"
TCGA.AG.3906.01A	13	41517048	41532942	5	1.4801	LARGE-GAIN	FOCAL	1	ELF1
TCGA.CK.5914.01A	13	41766842	41885595	11	1.2957	LARGE-GAIN	FOCAL	3	"KBTBD7,MTRF1,NAA16"
TCGA.CK.5914.01A	13	41929255	42032392	13	1.475	LARGE-GAIN	FOCAL	2	"NAA16,RGCC"
TCGA.CK.5914.01A	13	42161600	42439810	32	1.4065	LARGE-GAIN	FOCAL	1	VWA8
TCGA.AG.3909.01A	13	42179265	42407474	28	0.8949	LARGE-GAIN	FOCAL	1	VWA8
TCGA.AA.A00F.01A	13	42439810	42524024	10	1.0804	LARGE-GAIN	FOCAL	1	VWA8
TCGA.AG.A00C.01A	13	42442431	42486146	8	0.9542	LARGE-GAIN	FOCAL	1	VWA8
TCGA.AG.3909.01A	13	42701552	43935394	77	0.7246	LARGE-GAIN	FOCAL	7	"AKAP11,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,TNFSF11"
TCGA.CK.5914.01A	13	42701552	43986000	78	1.165	LARGE-GAIN	FOCAL	7	"AKAP11,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,TNFSF11"
TCGA.CM.5862	13	43174099	43353485	84	1.5885	LARGE-GAIN	FOCAL	1	TNFSF11
TCGA.CM.5862	13	43355215	45262402	799	1.1905	LARGE-GAIN	FOCAL	9	"CCDC122,DNAJC15,ENOX1,EPSTI1,FAM216B,LACC1,SERP2,SMIM2,TSC22D1"
TCGA.AA.3941	13	43447498	43947362	241	0.7734	LARGE-GAIN	FOCAL	3	"DNAJC15,ENOX1,EPSTI1"
TCGA.AA.A00F.01A	13	43986000	45147268	18	1.0419	LARGE-GAIN	FOCAL	6	"CCDC122,ENOX1,LACC1,SERP2,SMIM2,TSC22D1"
TCGA.AG.A00C.01A	13	44433789	45149837	15	0.8374	LARGE-GAIN	FOCAL	5	"CCDC122,LACC1,SERP2,SMIM2,TSC22D1"
TCGA.DM.A28F	13	44734695	44742425	4	1.5423	LARGE-GAIN	FOCAL	1	SMIM2
TCGA.AA.A00F.01A	13	45149837	45857560	28	0.7434	LARGE-GAIN	FOCAL	5	"GPALPP1,GTF2F2,KCTD4,NUFIP1,TSC22D1"
TCGA.CM.5862	13	45262493	45586037	90	1.7217	LARGE-GAIN	FOCAL	2	"GPALPP1,NUFIP1"
TCGA.CK.5914.01A	13	45515299	45857560	27	1.0542	LARGE-GAIN	FOCAL	4	"GPALPP1,GTF2F2,KCTD4,NUFIP1"
TCGA.AA.A00Q.01A	13	45578399	45857560	16	0.7633	LARGE-GAIN	FOCAL	3	"GPALPP1,GTF2F2,KCTD4"
TCGA.AA.A00F.01A	13	45911456	46070250	30	1.1594	LARGE-GAIN	FOCAL	3	"COG3,SLC25A30,TPT1"
TCGA.AG.A00C.01A	13	45911456	46070250	27	0.9247	LARGE-GAIN	FOCAL	3	"COG3,SLC25A30,TPT1"
TCGA.AG.3906.01A	13	46050299	46070250	12	1.2698	LARGE-GAIN	FOCAL	1	COG3
TCGA.AA.A00F.01A	13	46077329	46725024	50	0.74	LARGE-GAIN	FOCAL	7	"COG3,CPB2,ERICH6B,LCP1,SIAH3,SPERT,ZC3H13"
TCGA.CK.5914.01A	13	46083780	46170492	21	1.0418	LARGE-GAIN	FOCAL	2	"COG3,ERICH6B"
TCGA.CK.5914.01A	13	46287305	46616245	20	1.2708	LARGE-GAIN	FOCAL	3	"SIAH3,SPERT,ZC3H13"
TCGA.AA.A00N.01A	13	46357479	46585500	17	0.9648	LARGE-GAIN	FOCAL	2	"SIAH3,ZC3H13"
TCGA.AG.3594	13	46444706	47121509	227	0.6916	LARGE-GAIN	FOCAL	5	"CPB2,KIAA0226L,LCP1,LRRC63,ZC3H13"
TCGA.CK.5914.01A	13	46679011	46708232	4	1.3883	LARGE-GAIN	FOCAL	2	"CPB2,LCP1"
TCGA.AG.A00C.01A	13	46725024	46733679	7	0.8011	LARGE-GAIN	FOCAL	1	LCP1
TCGA.AA.A00F.01A	13	46726867	46733679	6	1.1804	LARGE-GAIN	FOCAL	1	LCP1
TCGA.CK.5914.01A	13	46801661	48611843	63	1.1534	LARGE-GAIN	FOCAL	7	"ESD,HTR2A,KIAA0226L,LRCH1,LRRC63,NUDT15,SUCLA2"
TCGA.AG.A00C.01A	13	46936627	46951958	6	0.687	LARGE-GAIN	FOCAL	1	KIAA0226L
TCGA.CM.5862	13	46975364	48695690	668	1.6971	LARGE-GAIN	FOCAL	6	"ESD,HTR2A,LRCH1,MED4,NUDT15,SUCLA2"
TCGA.AG.3594	13	47133121	47134305	3	1.7166	LARGE-GAIN	FOCAL	1	LRCH1
TCGA.AG.3594	13	47147022	47194684	14	0.7171	LARGE-GAIN	FOCAL	1	LRCH1
TCGA.AA.A00N.01A	13	47243113	47324623	17	0.8659	LARGE-GAIN	FOCAL	1	LRCH1
TCGA.DY.A1DC	13	48003211	48015334	7	1.4437	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	13	48079804	48082675	4	1.7671	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	13	48466757	49173537	165	0.855	LARGE-GAIN	FOCAL	7	"ITM2B,LPAR6,MED4,NUDT15,RB1,RCBTB2,SUCLA2"
TCGA.D5.6537	13	48518957	48548837	6	1.6877	LARGE-GAIN	FOCAL	1	SUCLA2
TCGA.AA.A010.01A	13	48562658	48664435	13	1.0748	LARGE-GAIN	FOCAL	3	"MED4,NUDT15,SUCLA2"
TCGA.CK.5914.01A	13	48669039	48987108	27	1.1505	LARGE-GAIN	FOCAL	4	"ITM2B,LPAR6,MED4,RB1"
TCGA.AA.A00N.01A	13	48934106	48987108	14	0.8983	LARGE-GAIN	FOCAL	2	"LPAR6,RB1"
TCGA.AA.A00N.01A	13	49064208	49085874	7	0.6906	LARGE-GAIN	FOCAL	1	RCBTB2
TCGA.CK.5914.01A	13	49280917	49712871	10	1.3757	LARGE-GAIN	FOCAL	2	"CYSLTR2,FNDC3A"
TCGA.CK.5914.01A	13	49719866	49924877	34	0.9076	LARGE-GAIN	FOCAL	4	"CAB39L,CDADC1,FNDC3A,MLNR"
TCGA.AA.A00D.01A	13	50025936	50095002	18	1.0962	LARGE-GAIN	FOCAL	2	"PHF11,SETDB2"
TCGA.AG.A00C.01A	13	50054327	50096111	13	0.9581	LARGE-GAIN	FOCAL	2	"PHF11,SETDB2"
TCGA.AA.A00D.01A	13	50096111	51530445	55	0.6879	LARGE-GAIN	FOCAL	10	"ARL11,DLEU7,EBPL,KCNRG,KPNA3,PHF11,RCBTB1,RNASEH2B,SPRYD7,TRIM13"
TCGA.CK.5914.01A	13	50510219	51504771	15	0.8665	LARGE-GAIN	FOCAL	5	"DLEU7,KCNRG,RNASEH2B,SPRYD7,TRIM13"
TCGA.AA.3941	13	50721116	51752149	365	0.7168	LARGE-GAIN	FOCAL	2	"DLEU7,RNASEH2B"
TCGA.CK.5914.01A	13	51508974	52330421	54	1.4879	LARGE-GAIN	FOCAL	5	"FAM124A,INTS6,RNASEH2B,SERPINE3,WDFY2"
TCGA.AA.3941	13	51769887	51922984	68	0.897	LARGE-GAIN	FOCAL	2	"FAM124A,SERPINE3"
TCGA.AG.3909.01A	13	51854556	51922297	6	1.5415	LARGE-GAIN	FOCAL	2	"FAM124A,SERPINE3"
TCGA.AG.3909.01A	13	51929127	51969389	16	0.8898	LARGE-GAIN	FOCAL	2	"INTS6,SERPINE3"
TCGA.AA.A01C.01A	13	51935371	51943034	5	1.2667	LARGE-GAIN	FOCAL	2	"INTS6,SERPINE3"
TCGA.AA.3509.01A	13	51935371	51953547	10	2.4326	LARGE-GAIN	FOCAL	2	"INTS6,SERPINE3"
TCGA.AZ.4684.01A	13	51935371	51953547	10	1.8131	LARGE-GAIN	FOCAL	2	"INTS6,SERPINE3"
TCGA.AA.A00K.01A	13	52332276	52345905	5	2.159	LARGE-GAIN	FOCAL	2	"DHRS12,WDFY2"
TCGA.CK.5914.01A	13	52332276	52586486	33	0.9354	LARGE-GAIN	FOCAL	4	"ATP7B,CCDC70,DHRS12,WDFY2"
TCGA.AA.A01C.01A	13	52524143	52548822	11	0.7233	LARGE-GAIN	FOCAL	1	ATP7B
TCGA.AG.A00C.01A	13	52585351	53238085	68	0.8265	LARGE-GAIN	FOCAL	10	"ALG11,ATP7B,CKAP2,HNRNPA1L2,NEK3,NEK5,SUGT1,THSD1,UTP14C,VPS36"
TCGA.AA.A00D.01A	13	52586486	53261842	61	0.8872	LARGE-GAIN	FOCAL	9	"ALG11,CKAP2,HNRNPA1L2,NEK3,NEK5,SUGT1,THSD1,UTP14C,VPS36"
TCGA.AG.3906.01A	13	52639494	52661424	7	1.4474	LARGE-GAIN	FOCAL	1	NEK5
TCGA.AA.A00F.01A	13	52639494	52663320	8	1.3355	LARGE-GAIN	FOCAL	1	NEK5
TCGA.AA.A00F.01A	13	52667162	53419532	55	0.9741	LARGE-GAIN	FOCAL	9	"CKAP2,HNRNPA1L2,LECT1,NEK3,NEK5,PCDH8,SUGT1,THSD1,VPS36"
TCGA.AG.3906.01A	13	53030599	53042349	6	1.0319	LARGE-GAIN	FOCAL	1	CKAP2
TCGA.AZ.4684.01A	13	53616003	61041320	38	0.8607	LARGE-GAIN	FOCAL	9	"DIAPH3,OLFM4,PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.AA.3509.01A	13	53624067	61041320	36	1.4445	LARGE-GAIN	FOCAL	9	"DIAPH3,OLFM4,PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.DY.A1DC	13	53928245	53963156	15	1.4588	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	53964663	56770812	720	0.7047	LARGE-GAIN	FOCAL	0	None
TCGA.EI.6509	13	54674470	54678588	6	1.8995	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	54751871	56200942	352	0.7191	LARGE-GAIN	FOCAL	0	None
TCGA.A6.A56B	13	55988042	56952663	195	0.8947	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	56276767	56377853	28	0.9603	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	56329716	57223572	150	1.0702	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	56392266	57380628	154	1.068	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	56774643	56777986	8	1.9173	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	57363805	57365147	3	2.1711	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	57380628	61775759	1260	0.6896	LARGE-GAIN	FOCAL	8	"DIAPH3,PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.F5.6571	13	57816905	58238416	83	0.9448	LARGE-GAIN	FOCAL	1	PCDH17
TCGA.5M.AAT5	13	57816905	59093461	258	0.681	LARGE-GAIN	FOCAL	1	PCDH17
TCGA.AF.2693	13	57907839	59659516	417	0.9533	LARGE-GAIN	FOCAL	1	PCDH17
TCGA.AF.2693	13	60270280	60911217	169	0.7386	LARGE-GAIN	FOCAL	1	DIAPH3
TCGA.G4.6294	13	60933314	61344861	138	0.7439	LARGE-GAIN	FOCAL	1	TDRD3
TCGA.AA.3509.01A	13	61057848	72131117	30	2.0236	LARGE-GAIN	FOCAL	5	"DACH1,KLHL1,PCDH20,PCDH9,TDRD3"
TCGA.AZ.4684.01A	13	61057848	72131117	30	1.415	LARGE-GAIN	FOCAL	5	"DACH1,KLHL1,PCDH20,PCDH9,TDRD3"
TCGA.AF.2693	13	61217122	61831806	268	0.7865	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	61776499	61835480	23	1.1822	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	61835480	62840037	237	1.1924	LARGE-GAIN	FOCAL	1	PCDH20
TCGA.DY.A1DC	13	61836703	62863887	236	0.7075	LARGE-GAIN	FOCAL	1	PCDH20
TCGA.CM.5862	13	62457296	63507793	242	2.0371	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	62843251	62917157	22	0.7056	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	62867167	62868718	3	2.1156	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	62875396	63383495	105	0.704	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	62934550	63442472	104	0.7781	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	63383550	63398166	6	1.8361	LARGE-GAIN	FOCAL	0	None
TCGA.CM.5862	13	63511840	74153653	3214	1.4517	LARGE-GAIN	FOCAL	8	"BORA,DACH1,DIS3,KLF5,KLHL1,MZT1,PCDH9,PIBF1"
TCGA.AF.2693	13	63798688	64425435	175	0.7842	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	64222994	64665184	119	0.8713	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2692	13	64244495	64249337	3	1.6988	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	65469454	65580246	27	0.9739	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	65806191	65875380	21	1.0716	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	66604210	66613570	7	1.9715	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	66619179	68117192	450	0.6968	LARGE-GAIN	FOCAL	1	PCDH9
TCGA.AF.2693	13	66657416	67727333	344	0.8699	LARGE-GAIN	FOCAL	1	PCDH9
TCGA.F5.6571	13	67699197	68571737	222	0.9284	LARGE-GAIN	FOCAL	1	PCDH9
TCGA.AF.2693	13	67748519	67849763	23	1.0116	LARGE-GAIN	FOCAL	1	PCDH9
TCGA.DM.A1HB	13	68108516	68109334	3	1.7199	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	68120952	68153180	17	1.5624	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	68980366	69065523	39	0.8769	LARGE-GAIN	FOCAL	0	None
TCGA.SS.A7HO	13	69453185	69462094	5	1.2238	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	69651851	69675084	12	1.4492	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	69954918	70736063	221	0.9387	LARGE-GAIN	FOCAL	1	KLHL1
TCGA.CA.6715	13	70251851	70764738	175	0.7946	LARGE-GAIN	FOCAL	1	KLHL1
TCGA.DM.A28F	13	70633076	70654177	18	1.6223	LARGE-GAIN	FOCAL	1	KLHL1
TCGA.A6.6140	13	70733843	70789138	24	0.8781	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.6606	13	70746965	70755852	3	2.7031	LARGE-GAIN	FOCAL	0	None
TCGA.CA.6715	13	70772393	71067773	119	0.8288	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DG	13	70927977	74304017	1195	0.7237	LARGE-GAIN	FOCAL	7	"BORA,DACH1,DIS3,KLF12,KLF5,MZT1,PIBF1"
TCGA.AF.2693	13	70972732	71176122	69	0.8207	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	71198105	71275420	26	0.9862	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	13	71275639	71277508	7	0.7153	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01S	13	71948869	72274180	60	0.80095	LARGE-GAIN	FOCAL	1	DACH1
TCGA.AA.A00D.01A	13	72146930	73649795	43	0.8686	LARGE-GAIN	FOCAL	6	"BORA,DACH1,DIS3,KLF5,MZT1,PIBF1"
TCGA.CK.5914.01A	13	72255890	73637892	56	0.723	LARGE-GAIN	FOCAL	6	"BORA,DACH1,DIS3,KLF5,MZT1,PIBF1"
TCGA.AA.A01S	13	72275404	73228407	426	1.30655	LARGE-GAIN	FOCAL	1	DACH1
TCGA.AG.3883	13	72486796	72495789	4	1.0304	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2693	13	72586784	74474850	769	0.8611	LARGE-GAIN	FOCAL	6	"BORA,DIS3,KLF12,KLF5,MZT1,PIBF1"
TCGA.AA.A01S	13	73237354	73847513	189	1.62955	LARGE-GAIN	FOCAL	5	"BORA,DIS3,KLF5,MZT1,PIBF1"
TCGA.AA.A00F.01A	13	73284375	73369460	25	0.8492	LARGE-GAIN	FOCAL	4	"BORA,DIS3,MZT1,PIBF1"
TCGA.AG.3727	13	73466998	73691059	40	0.8238	LARGE-GAIN	FOCAL	2	"KLF5,PIBF1"
TCGA.DM.A0XD	13	73480391	73577727	13	0.7897	LARGE-GAIN	FOCAL	1	PIBF1
TCGA.QG.A5Z1	13	73480391	74377444	339	1.4981	LARGE-GAIN	FOCAL	3	"KLF12,KLF5,PIBF1"
TCGA.DM.A0X9	13	73503846	74056450	219	0.7931	LARGE-GAIN	FOCAL	2	"KLF5,PIBF1"
TCGA.AA.A00F.01A	13	73547695	73637892	5	0.8391	LARGE-GAIN	FOCAL	2	"KLF5,PIBF1"
TCGA.DM.A0XD	13	73598575	73713874	30	1.2363	LARGE-GAIN	FOCAL	1	KLF5
TCGA.AF.3913	13	73598575	73764235	51	0.9197	LARGE-GAIN	FOCAL	1	KLF5
TCGA.AG.3891.01A	13	73635971	73637892	2	0.9694	LARGE-GAIN	FOCAL	1	KLF5
TCGA.AG.3906.01A	13	73635971	73637892	2	1.7644	LARGE-GAIN	FOCAL	1	KLF5
TCGA.CK.5914.01A	13	73649795	75923267	25	1.3593	LARGE-GAIN	FOCAL	3	"KLF12,KLF5,TBC1D4"
TCGA.DM.A0XD	13	73716625	74007185	161	0.7345	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6534	13	73789669	74056450	145	1.1126	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	13	73846691	73854665	4	1.5449	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01S	13	73853300	73911412	28	1.25085	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01S	13	73911461	74333614	165	1.63895	LARGE-GAIN	FOCAL	1	KLF12
TCGA.CM.5862	13	74157319	74571956	182	1.9949	LARGE-GAIN	FOCAL	1	KLF12
TCGA.AA.A01S	13	74335038	74395491	37	1.21905	LARGE-GAIN	FOCAL	1	KLF12
TCGA.QG.A5Z1	13	74383383	75052994	330	1.1533	LARGE-GAIN	FOCAL	1	KLF12
TCGA.AA.A00D.01A	13	75930236	76378447	24	0.7041	LARGE-GAIN	FOCAL	4	"COMMD6,LMO7,TBC1D4,UCHL3"
TCGA.CK.5914.01A	13	76141316	77566036	47	1.3618	LARGE-GAIN	FOCAL	5	"IRG1,KCTD12,LMO7,LMO7DN,UCHL3"
TCGA.AA.A00N.01A	13	76287254	77566036	38	0.7977	LARGE-GAIN	FOCAL	4	"IRG1,KCTD12,LMO7,LMO7DN"
TCGA.AG.3909.01A	13	76391245	76432032	20	0.9341	LARGE-GAIN	FOCAL	1	LMO7
TCGA.AA.A00F.01A	13	77531113	77595626	8	1.0212	LARGE-GAIN	FOCAL	3	"CLN5,FBXL3,IRG1"
TCGA.AA.A00D.01A	13	77569146	77595626	7	0.9678	LARGE-GAIN	FOCAL	2	"CLN5,FBXL3"
TCGA.AG.A00C.01A	13	77569146	77595626	7	1.2005	LARGE-GAIN	FOCAL	2	"CLN5,FBXL3"
TCGA.CK.5914.01A	13	77619466	77631104	5	0.7787	LARGE-GAIN	FOCAL	1	MYCBP2
TCGA.CK.5914.01A	13	77632306	77641688	8	1.3884	LARGE-GAIN	FOCAL	1	MYCBP2
TCGA.CK.5914.01A	13	77642649	77672583	17	1.7969	LARGE-GAIN	FOCAL	1	MYCBP2
TCGA.AA.A00J.01A	13	77671514	77672583	3	4.2532	LARGE-GAIN	FOCAL	1	MYCBP2
TCGA.CK.5914.01A	13	77695461	77714944	6	1.37	LARGE-GAIN	FOCAL	1	MYCBP2
TCGA.CK.5914.01A	13	77718543	77724842	3	1.0189	LARGE-GAIN	FOCAL	1	MYCBP2
TCGA.CK.5914.01A	13	77751871	77764331	7	0.717	LARGE-GAIN	FOCAL	1	MYCBP2
TCGA.CK.5914.01A	13	77765777	78202062	51	1.1812	LARGE-GAIN	FOCAL	2	"MYCBP2,SCEL"
TCGA.CK.5914.01A	13	78293684	78492178	14	1.5692	LARGE-GAIN	FOCAL	2	"EDNRB,SLAIN1"
TCGA.AA.A010.01A	13	78492178	78493495	2	1.2607	LARGE-GAIN	FOCAL	1	EDNRB
TCGA.DY.A0XA	13	78659207	81025529	867	1.173	LARGE-GAIN	FOCAL	5	"NDFIP2,POU4F1,RBM26,RNF219,SPRY2"
TCGA.AG.3896	13	78660355	79160878	250	1.4199	LARGE-GAIN	FOCAL	0	None
TCGA.QG.A5Z1	13	78853310	82309442	1108	1.163	LARGE-GAIN	FOCAL	5	"NDFIP2,POU4F1,RBM26,RNF219,SPRY2"
TCGA.CK.5914.01A	13	79233118	86368066	37	1.3556	LARGE-GAIN	FOCAL	6	"NDFIP2,RBM26,RNF219,SLITRK1,SLITRK6,SPRY2"
TCGA.DM.A28M.01A	13	79889020	79918752	8	1.2283	LARGE-GAIN	FOCAL	1	RBM26
TCGA.AA.A00N.01A	13	79894703	80125100	27	0.982	LARGE-GAIN	FOCAL	2	"NDFIP2,RBM26"
TCGA.CM.5862	13	80278963	80374536	32	2.0228	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A0XA	13	81312170	82785961	385	1.0496	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	81990515	82033545	16	1.206	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	82044106	82053415	5	1.7074	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A280	13	82044106	82072944	9	1.1563	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	82054201	82085859	13	1.2284	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	82086220	83035093	240	0.7124	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	82090957	83441553	351	0.9375	LARGE-GAIN	FOCAL	0	None
TCGA.A6.5656	13	82882667	83700168	216	0.8549	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	83044399	83066896	14	1.5761	LARGE-GAIN	FOCAL	0	None
TCGA.A6.2681	13	83077703	83183606	20	0.7776	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4308	13	83155774	83174738	3	1.9482	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.5403	13	83292435	83304813	7	1.1498	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	83598544	83774732	38	0.8899	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	83786516	83806190	11	1.8226	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	83807241	88711959	1284	0.6938	LARGE-GAIN	FOCAL	3	"SLITRK1,SLITRK5,SLITRK6"
TCGA.AA.3667	13	83956170	94046043	2960	0.6919	LARGE-GAIN	FOCAL	5	"GPC5,GPC6,SLITRK1,SLITRK5,SLITRK6"
TCGA.DM.A1HB	13	85016488	85033963	7	0.9231	LARGE-GAIN	FOCAL	0	None
TCGA.AY.6196	13	85475382	85479016	3	1.8661	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	85499384	86665618	415	0.9404	LARGE-GAIN	FOCAL	1	SLITRK6
TCGA.CA.6715	13	86687239	86703731	5	0.7974	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01S	13	87597547	87635362	11	1.16815	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	88562065	90079165	363	0.9356	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	88724697	88740352	8	1.7553	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	88740496	89429735	182	0.6846	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	89447318	89482270	8	1.6744	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	89513961	94169900	1562	0.6839	LARGE-GAIN	FOCAL	2	"GPC5,GPC6"
TCGA.F5.6571	13	90434136	94075238	1277	0.9058	LARGE-GAIN	FOCAL	2	"GPC5,GPC6"
TCGA.F5.6702	13	91679473	92132697	164	0.743	LARGE-GAIN	FOCAL	1	GPC5
TCGA.AA.A00N.01A	13	92051249	95131168	26	0.9214	LARGE-GAIN	FOCAL	3	"DCT,GPC5,GPC6"
TCGA.AG.3909.01A	13	92051249	95131168	26	0.9034	LARGE-GAIN	FOCAL	3	"DCT,GPC5,GPC6"
TCGA.CK.5914.01A	13	92051249	95131168	26	1.4341	LARGE-GAIN	FOCAL	3	"DCT,GPC5,GPC6"
TCGA.A6.6142	13	93006955	93168981	64	1.7451	LARGE-GAIN	FOCAL	1	GPC5
TCGA.A6.6142	13	93178033	93348177	52	0.79	LARGE-GAIN	FOCAL	1	GPC5
TCGA.AH.6897	13	93348177	93358873	5	0.9853	LARGE-GAIN	FOCAL	1	GPC5
TCGA.AU.3779	13	94099855	94102738	4	1.5639	LARGE-GAIN	FOCAL	1	GPC6
TCGA.DY.A1DC	13	94173687	94183682	7	1.5752	LARGE-GAIN	FOCAL	1	GPC6
TCGA.AA.A00F.01A	13	95095663	96555060	113	0.8349	LARGE-GAIN	FOCAL	9	"ABCC4,CLDN10,DCT,DNAJC3,DZIP1,GPR180,SOX21,TGDS,UGGT2"
TCGA.AA.3941	13	95103045	95258943	59	1.0088	LARGE-GAIN	FOCAL	3	"DCT,GPR180,TGDS"
TCGA.CK.5914.01A	13	95226973	95235321	8	0.8132	LARGE-GAIN	FOCAL	1	TGDS
TCGA.AA.3941	13	95262092	95719793	202	0.6919	LARGE-GAIN	FOCAL	3	"ABCC4,GPR180,SOX21"
TCGA.CK.5914.01A	13	95271384	95714921	12	0.9047	LARGE-GAIN	FOCAL	3	"ABCC4,GPR180,SOX21"
TCGA.AA.3524	13	95615649	95636038	18	1.2336	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3532	13	95615649	95636038	18	1.0926	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2689	13	95615649	95636038	18	0.7991	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3534	13	95627009	95636038	12	1.0727	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3522	13	95630089	95636038	11	0.7138	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3527	13	95630089	95636038	11	1.1616	LARGE-GAIN	FOCAL	0	None
TCGA.AF.2691	13	95630089	95636038	11	1.0646	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	13	95695889	96264239	46	0.8024	LARGE-GAIN	FOCAL	3	"ABCC4,CLDN10,DZIP1"
TCGA.AA.3941	13	95723038	96433581	278	0.9687	LARGE-GAIN	FOCAL	4	"ABCC4,CLDN10,DNAJC3,DZIP1"
TCGA.CK.5914.01A	13	95723879	96086037	26	1.4477	LARGE-GAIN	FOCAL	2	"ABCC4,CLDN10"
TCGA.CK.5914.01A	13	96204966	96555060	54	0.9691	LARGE-GAIN	FOCAL	4	"CLDN10,DNAJC3,DZIP1,UGGT2"
TCGA.AZ.4684.01A	13	96485130	98116442	52	0.931	LARGE-GAIN	FOCAL	5	"HS6ST3,MBNL2,OXGR1,RAP2A,UGGT2"
TCGA.AA.A00F.01A	13	96577881	96601538	7	1.2331	LARGE-GAIN	FOCAL	1	UGGT2
TCGA.CK.5914.01A	13	96599242	96665514	11	1.259	LARGE-GAIN	FOCAL	1	UGGT2
TCGA.AA.A00F.01A	13	96622314	97639009	14	0.6833	LARGE-GAIN	FOCAL	3	"HS6ST3,OXGR1,UGGT2"
TCGA.DY.A1DC	13	97328170	97367218	9	1.4065	LARGE-GAIN	FOCAL	1	HS6ST3
TCGA.AA.3941	13	97402914	97437943	9	0.8675	LARGE-GAIN	FOCAL	1	HS6ST3
TCGA.AA.A00F.01A	13	97639320	99379004	91	0.9783	LARGE-GAIN	FOCAL	8	"FARP1,IPO5,MBNL2,OXGR1,RAP2A,RNF113B,SLC15A1,STK24"
TCGA.AA.3941	13	97661814	98244312	181	0.7289	LARGE-GAIN	FOCAL	2	"MBNL2,RAP2A"
TCGA.AA.3941	13	98272470	98562832	114	0.776	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3891.01A	13	98621971	98642640	6	0.8741	LARGE-GAIN	FOCAL	1	IPO5
TCGA.AG.3906.01A	13	98621971	98645114	7	1.0994	LARGE-GAIN	FOCAL	1	IPO5
TCGA.CK.5914.01A	13	98660258	99083265	30	0.8819	LARGE-GAIN	FOCAL	3	"FARP1,IPO5,RNF113B"
TCGA.AG.3909.01A	13	99171459	99629986	70	0.9378	LARGE-GAIN	FOCAL	3	"DOCK9,SLC15A1,STK24"
TCGA.AA.A00N.01A	13	99173966	99629986	72	0.7108	LARGE-GAIN	FOCAL	3	"DOCK9,SLC15A1,STK24"
TCGA.CK.5914.01A	13	99173966	99853077	73	1.3096	LARGE-GAIN	FOCAL	4	"DOCK9,SLC15A1,STK24,UBAC2"
TCGA.AA.A00Q.01A	13	99339785	99379004	16	0.7718	LARGE-GAIN	FOCAL	1	SLC15A1
TCGA.AA.3939.01A	13	99339785	99452504	20	0.9703	LARGE-GAIN	FOCAL	2	"DOCK9,SLC15A1"
TCGA.AA.A010.01A	13	99379004	99520433	29	0.7936	LARGE-GAIN	FOCAL	2	"DOCK9,SLC15A1"
TCGA.AA.A00F.01A	13	99853648	101167654	61	0.8733	LARGE-GAIN	FOCAL	8	"CLYBL,GPR18,GPR183,PCCA,TM9SF2,UBAC2,ZIC2,ZIC5"
TCGA.AG.3906.01A	13	99890631	99907082	4	1.1248	LARGE-GAIN	FOCAL	2	"GPR18,UBAC2"
TCGA.CK.5914.01A	13	99947262	101143817	63	0.9577	LARGE-GAIN	FOCAL	7	"CLYBL,GPR183,PCCA,TM9SF2,UBAC2,ZIC2,ZIC5"
TCGA.AG.3891.01A	13	100543531	100637150	5	0.8461	LARGE-GAIN	FOCAL	3	"CLYBL,ZIC2,ZIC5"
TCGA.AG.3906.01A	13	100617580	100637150	4	1.6447	LARGE-GAIN	FOCAL	2	"ZIC2,ZIC5"
TCGA.AG.A01L.01A	13	101077850	101322525	19	1.5943	LARGE-GAIN	FOCAL	3	"GGACT,PCCA,TMTC4"
TCGA.AA.A00F.01A	13	101179868	101288779	9	1.205	LARGE-GAIN	FOCAL	3	"GGACT,PCCA,TMTC4"
TCGA.AA.3861.01A	13	101287009	101707615	11	0.8501	LARGE-GAIN	FOCAL	2	"NALCN,TMTC4"
TCGA.AG.3909.01A	13	101287009	103400949	109	0.7536	LARGE-GAIN	FOCAL	7	"CCDC168,FGF14,ITGBL1,METTL21C,NALCN,TMTC4,TPP2"
TCGA.AA.A01Q.01A	13	101289740	101717714	7	0.7814	LARGE-GAIN	FOCAL	2	"NALCN,TMTC4"
TCGA.AA.A00F.01A	13	101289740	103400949	99	0.6844	LARGE-GAIN	FOCAL	7	"CCDC168,FGF14,ITGBL1,METTL21C,NALCN,TMTC4,TPP2"
TCGA.AA.3941	13	101468429	101537153	34	0.7357	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	13	101556535	101720486	113	0.7692	LARGE-GAIN	FOCAL	1	NALCN
TCGA.CK.5914.01A	13	101707615	101714273	4	1.7329	LARGE-GAIN	FOCAL	1	NALCN
TCGA.AA.A010.01A	13	101707615	101721006	7	0.972	LARGE-GAIN	FOCAL	1	NALCN
TCGA.AA.A00N.01A	13	101707615	102527484	53	0.8164	LARGE-GAIN	FOCAL	3	"FGF14,ITGBL1,NALCN"
TCGA.CK.5914.01A	13	101717714	101728167	6	1.1371	LARGE-GAIN	FOCAL	1	NALCN
TCGA.AA.A02H.01A	13	101728167	103394841	83	1.3245	LARGE-GAIN	FOCAL	6	"CCDC168,FGF14,ITGBL1,METTL21C,NALCN,TPP2"
TCGA.CK.5914.01A	13	101733831	101763429	13	1.8106	LARGE-GAIN	FOCAL	1	NALCN
TCGA.AA.3509.01A	13	101736010	103388359	80	1.3621	LARGE-GAIN	FOCAL	6	"CCDC168,FGF14,ITGBL1,METTL21C,NALCN,TPP2"
TCGA.AZ.4684.01A	13	101736010	103388359	80	0.7461	LARGE-GAIN	FOCAL	6	"CCDC168,FGF14,ITGBL1,METTL21C,NALCN,TPP2"
TCGA.A6.3808.01A	13	101757173	103402443	80	1.1249	LARGE-GAIN	FOCAL	6	"CCDC168,FGF14,ITGBL1,METTL21C,NALCN,TPP2"
TCGA.CK.5914.01A	13	101776894	103287907	44	1.0078	LARGE-GAIN	FOCAL	4	"FGF14,ITGBL1,NALCN,TPP2"
TCGA.AA.3941	13	103183623	103378853	94	0.7678	LARGE-GAIN	FOCAL	2	"METTL21C,TPP2"
TCGA.CK.5914.01A	13	103288527	103410714	35	1.6207	LARGE-GAIN	FOCAL	3	"CCDC168,METTL21C,TPP2"
TCGA.AA.A010.01A	13	103338359	103346670	4	1.0554	LARGE-GAIN	FOCAL	1	METTL21C
TCGA.AG.A008.01A	13	103383950	103394841	6	1.0886	LARGE-GAIN	FOCAL	1	CCDC168
TCGA.AA.3509.01A	13	103389120	103410714	7	2.4908	LARGE-GAIN	FOCAL	1	CCDC168
TCGA.AZ.4684.01A	13	103389120	103410714	7	1.8099	LARGE-GAIN	FOCAL	1	CCDC168
TCGA.AA.3941	13	103406218	103636826	118	0.8311	LARGE-GAIN	FOCAL	6	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,KDELC1,TEX30"
TCGA.AA.A00F.01A	13	103418703	103468731	16	1.2646	LARGE-GAIN	FOCAL	4	"BIVM,BIVM-ERCC5,KDELC1,TEX30"
TCGA.AG.A00C.01A	13	103418703	103474042	19	1.0396	LARGE-GAIN	FOCAL	4	"BIVM,BIVM-ERCC5,KDELC1,TEX30"
TCGA.AA.A00D.01A	13	103419616	103520436	34	0.9182	LARGE-GAIN	FOCAL	5	"BIVM,BIVM-ERCC5,ERCC5,KDELC1,TEX30"
TCGA.CK.5914.01A	13	103473364	103527640	22	0.8339	LARGE-GAIN	FOCAL	3	"BIVM,BIVM-ERCC5,ERCC5"
TCGA.AG.3909.01A	13	103486759	107164883	32	0.7991	LARGE-GAIN	FOCAL	6	"BIVM,BIVM-ERCC5,DAOA,EFNB2,ERCC5,SLC10A2"
TCGA.AA.A00N.01A	13	103498569	107148061	28	0.9268	LARGE-GAIN	FOCAL	5	"BIVM-ERCC5,DAOA,EFNB2,ERCC5,SLC10A2"
TCGA.AA.3861.01A	13	103506085	103527640	13	1.0931	LARGE-GAIN	FOCAL	2	"BIVM-ERCC5,ERCC5"
TCGA.AA.3862.01A	13	103506085	103527640	13	1.4579	LARGE-GAIN	FOCAL	2	"BIVM-ERCC5,ERCC5"
TCGA.CK.5914.01A	13	103698433	107145389	11	1.4891	LARGE-GAIN	FOCAL	3	"DAOA,EFNB2,SLC10A2"
TCGA.F5.6571	13	105102458	105454254	188	0.9737	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6702	13	105279218	105317816	20	1.7712	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3887	13	105425254	105447792	12	1.0354	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	105491755	108184754	1284	0.9208	LARGE-GAIN	FOCAL	4	"ARGLU1,DAOA,EFNB2,FAM155A"
TCGA.EI.6510	13	106131282	106132718	3	2.0148	LARGE-GAIN	FOCAL	1	DAOA
TCGA.AA.3941	13	106474704	106651832	142	0.7698	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	13	106682611	107391097	316	0.7469	LARGE-GAIN	FOCAL	2	"ARGLU1,EFNB2"
TCGA.AA.A010.01A	13	107145389	107148061	3	0.8765	LARGE-GAIN	FOCAL	1	EFNB2
TCGA.CK.5914.01A	13	107147198	107164883	3	0.8444	LARGE-GAIN	FOCAL	1	EFNB2
TCGA.AG.A00C.01A	13	107164883	108881540	14	0.956	LARGE-GAIN	FOCAL	5	"ABHD13,ARGLU1,EFNB2,FAM155A,LIG4"
TCGA.AA.3941	13	108063404	108069634	6	1.1541	LARGE-GAIN	FOCAL	1	FAM155A
TCGA.AA.3941	13	108170370	108175940	9	0.8392	LARGE-GAIN	FOCAL	1	FAM155A
TCGA.DY.A1DC	13	108610983	108628715	12	1.2649	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	13	108734014	108741050	5	1.6205	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	13	108862420	108886098	5	3.6202	LARGE-GAIN	FOCAL	2	"ABHD13,LIG4"
TCGA.AZ.4684.01A	13	108862420	108886098	5	2.9806	LARGE-GAIN	FOCAL	2	"ABHD13,LIG4"
TCGA.AG.3909.01A	13	108882957	111082674	91	0.7314	LARGE-GAIN	FOCAL	6	"ABHD13,COL4A1,COL4A2,IRS2,MYO16,TNFSF13B"
TCGA.AZ.4684.01A	13	108922245	109753086	33	0.9369	LARGE-GAIN	FOCAL	2	"MYO16,TNFSF13B"
TCGA.AA.3509.01A	13	108922245	110838681	67	1.3243	LARGE-GAIN	FOCAL	4	"COL4A1,IRS2,MYO16,TNFSF13B"
TCGA.CK.5914.01A	13	108922245	111080762	89	1.0283	LARGE-GAIN	FOCAL	5	"COL4A1,COL4A2,IRS2,MYO16,TNFSF13B"
TCGA.DM.A28F	13	108977730	108989697	3	1.5738	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	13	109501411	109503061	5	1.5524	LARGE-GAIN	FOCAL	1	MYO16
TCGA.DC.6683	13	109723245	111355553	860	0.6929	LARGE-GAIN	FOCAL	7	"CARKD,CARS2,COL4A1,COL4A2,IRS2,MYO16,RAB20"
TCGA.DM.A1D7	13	110039994	110781086	318	0.9886	LARGE-GAIN	FOCAL	1	IRS2
TCGA.AA.3844	13	110714356	110921994	117	0.7016	LARGE-GAIN	FOCAL	1	COL4A1
TCGA.AA.3509.01A	13	110839437	111099123	32	0.7652	LARGE-GAIN	FOCAL	2	"COL4A1,COL4A2"
TCGA.AA.3967.01A	13	110861700	111277481	48	1.5366	LARGE-GAIN	FOCAL	4	"CARKD,COL4A1,COL4A2,RAB20"
TCGA.AA.3509.01A	13	111101979	111267990	33	1.1422	LARGE-GAIN	FOCAL	3	"CARKD,COL4A2,RAB20"
TCGA.AA.3939.01A	13	111114401	111145493	16	0.8641	LARGE-GAIN	FOCAL	1	COL4A2
TCGA.AG.A016.01A	13	111286817	111296695	6	1.5008	LARGE-GAIN	FOCAL	2	"CARKD,CARS2"
TCGA.AG.3909.01A	13	111857597	111926119	8	0.7575	LARGE-GAIN	FOCAL	1	ARHGEF7
TCGA.AD.6963	13	112342671	112349444	5	1.2696	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6571	13	112982828	112988188	4	2.2804	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	13	113030648	113036699	3	1.9381	LARGE-GAIN	FOCAL	1	SPACA7
TCGA.AA.3939.01A	13	113478622	113479695	2	1.7621	LARGE-GAIN	FOCAL	1	ATP11A
TCGA.AA.A024.01A	13	113478622	113479695	2	3.4817	LARGE-GAIN	FOCAL	1	ATP11A
TCGA.EF.5830	13	113590923	113769345	48	0.821	LARGE-GAIN	FOCAL	2	"F7,MCF2L"
TCGA.AA.3815.01A	13	113801645	113803178	2	1.571	LARGE-GAIN	FOCAL	1	F10
TCGA.AG.A00C.01A	13	114112306	114188318	14	1.2762	LARGE-GAIN	FOCAL	2	"DCUN1D2,TMCO3"
TCGA.AG.A00C.01A	13	114751068	115089311	39	0.9348	LARGE-GAIN	FOCAL	4	"CDC16,CHAMP1,RASA3,UPF3A"
TCGA.EF.5830	13	114757219	114820989	6	1.1936	LARGE-GAIN	FOCAL	1	RASA3
TCGA.CK.5914.01A	13	115012342	115047459	10	0.9062	LARGE-GAIN	FOCAL	2	"CDC16,UPF3A"
TCGA.AA.3862.01A	13	115037607	115089311	9	1.9757	LARGE-GAIN	FOCAL	3	"CDC16,CHAMP1,UPF3A"
TCGA.AA.3861.01A	13	115051729	115089311	6	1.6703	LARGE-GAIN	FOCAL	2	"CHAMP1,UPF3A"
TCGA.A6.2674	14	20224002	20422582	16	0.8291	LARGE-GAIN	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.DM.A1D6	14	20224002	20422582	15	0.7361	LARGE-GAIN	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AA.3518	14	20417540	20420150	3	1.2898	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3561	14	20419258	20422582	3	0.9447	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	14	20760095	20784388	12	0.741	LARGE-GAIN	FOCAL	2	"CCNB1IP1,TTC5"
TCGA.A6.2674	14	20802314	20806294	3	0.9257	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	14	20811727	20897669	59	0.7881	LARGE-GAIN	FOCAL	3	"KLHL33,PARP2,TEP1"
TCGA.AA.A00N.01A	14	20840844	20854579	22	1.3561	LARGE-GAIN	FOCAL	1	TEP1
TCGA.AG.3909.01A	14	20841628	20854579	21	0.9058	LARGE-GAIN	FOCAL	1	TEP1
TCGA.AA.A00J.01A	14	20852155	20854579	4	3.4112	LARGE-GAIN	FOCAL	1	TEP1
TCGA.AA.A00D.01A	14	20863983	20978651	31	0.7892	LARGE-GAIN	FOCAL	7	"APEX1,KLHL33,OSGEP,PNP,RNASE10,TEP1,TMEM55B"
TCGA.AA.A01K.01A	14	21460222	21461217	3	1.7331	LARGE-GAIN	FOCAL	1	METTL17
TCGA.AG.3906.01A	14	21548798	21561650	12	1.0313	LARGE-GAIN	FOCAL	2	"ARHGEF40,ZNF219"
TCGA.AA.3967.01A	14	21555440	21559541	5	1.0518	LARGE-GAIN	FOCAL	2	"ARHGEF40,ZNF219"
TCGA.CK.5914.01A	14	21623084	21702064	7	0.7245	LARGE-GAIN	FOCAL	2	"HNRNPC,OR5AU1"
TCGA.AA.A00N.01A	14	21851955	21861594	8	1.1947	LARGE-GAIN	FOCAL	2	"CHD8,SUPT16H"
TCGA.AA.A00N.01A	14	21969820	22997416	11	0.8023	LARGE-GAIN	FOCAL	5	"METTL3,OR10G2,OR10G3,OR4E2,SALL2"
TCGA.AA.3852	14	22377904	22592993	117	0.6946	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3726	14	22393147	22613689	114	0.9349	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3901	14	22421493	22969650	268	0.9287	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3966	14	22454286	22658312	123	0.8256	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3543	14	22458694	22978774	277	0.9009	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3814	14	22479596	22628153	88	0.9035	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3851	14	22479811	22978774	270	0.7688	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A02Y	14	22481823	22969650	246	0.6908	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3548	14	22482001	22690132	112	1.0374	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3594	14	22497199	22959825	236	0.9745	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3866	14	22518411	22930807	215	1.1317	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3544	14	22537376	22549609	4	1.565	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3675	14	22580761	22611311	23	0.7578	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3860	14	22586603	22605155	11	0.8436	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3664	14	22590995	22975727	209	0.6823	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3852	14	22594445	22605155	6	1.2855	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3833	14	22594445	22606249	9	0.8179	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3812	14	22598375	22607501	11	0.814	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	14	22611311	22613689	10	1.0992	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3726	14	22615464	22838629	113	1.24	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3848	14	22615464	22966417	172	0.7207	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3971	14	22615464	22969650	171	0.6815	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3558	14	22615464	22978774	189	0.8096	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3860	14	22616833	22946379	164	0.6982	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3852	14	22617432	22966417	169	0.9721	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3544	14	22617432	22975699	172	1.3852	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3715	14	22619917	22838629	111	0.7043	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3854	14	22619917	22946379	161	0.6854	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3679	14	22623631	22781111	100	0.8107	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3681	14	22628153	22946379	158	0.706	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3814	14	22631884	22946219	154	1.2319	LARGE-GAIN	FOCAL	0	None
TCGA.AF.6655	14	22645682	22647502	3	1.0134	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3966	14	22662855	22714522	24	1.1701	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3548	14	22690294	22697134	6	2.3224	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3548	14	22698623	22968853	120	1.5285	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	14	22698980	22806219	64	1.0585	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3966	14	22722490	22738050	21	1.2565	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3966	14	22738104	22975727	98	0.8215	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3726	14	22843436	22851241	7	0.6908	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	14	22849760	22975727	66	1.0488	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3726	14	22855144	22942889	41	1.183	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3856	14	22855144	22946219	42	0.6919	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3715	14	22855144	22970326	56	0.6816	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3529	14	22900919	22922237	6	1.0135	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3673	14	22930807	22937655	5	1.7635	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3866	14	22931626	22942148	6	1.9817	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3866	14	22942618	22947281	4	1.3315	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3726	14	22946379	22978759	25	0.8674	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3814	14	22946379	22988021	28	0.8378	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3866	14	22947902	22974255	15	0.8543	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3952	14	23053771	23081925	12	0.679	LARGE-GAIN	FOCAL	2	"ABHD4,DAD1"
TCGA.AA.A01K.01A	14	23078581	23235702	3	2.6045	LARGE-GAIN	FOCAL	1	ABHD4
TCGA.AA.3867	14	23297666	23308202	4	0.9761	LARGE-GAIN	FOCAL	2	"MMP14,MRPL52"
TCGA.AG.3906.01A	14	23511407	23535099	14	1.8314	LARGE-GAIN	FOCAL	3	"ACIN1,CDH24,PSMB11"
TCGA.AF.3914.01A	14	23518187	23518804	2	1.5336	LARGE-GAIN	FOCAL	1	CDH24
TCGA.AA.A00N.01A	14	23586668	23651925	14	0.8544	LARGE-GAIN	FOCAL	2	"CEBPE,SLC7A8"
TCGA.AA.A010.01A	14	23586668	23651925	14	0.8726	LARGE-GAIN	FOCAL	2	"CEBPE,SLC7A8"
TCGA.AG.3906.01A	14	23791358	23794379	5	1.1886	LARGE-GAIN	FOCAL	2	"BCL2L2-PABPN1,PABPN1"
TCGA.AG.A032.01A	14	23853609	23854074	2	2.1372	LARGE-GAIN	FOCAL	1	MYH6
TCGA.CK.5914.01A	14	23900609	23938832	5	0.9437	LARGE-GAIN	FOCAL	1	MYH7
TCGA.AA.3524	14	23956378	23959994	3	0.8248	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	14	24044867	24506905	26	0.9024	LARGE-GAIN	FOCAL	5	"DHRS2,DHRS4,DHRS4L1,DHRS4L2,JPH4"
TCGA.AA.A00N.01A	14	24108033	24424206	10	0.928	LARGE-GAIN	FOCAL	2	"DHRS2,DHRS4"
TCGA.AA.3930.01A	14	24679024	24687284	9	0.7277	LARGE-GAIN	FOCAL	4	"CHMP4A,MDP1,NEDD8,NEDD8-MDP1"
TCGA.AG.A032.01A	14	24710183	24710864	2	2.5887	LARGE-GAIN	FOCAL	1	TINF2
TCGA.AG.3906.01A	14	24784836	24788901	4	1.0887	LARGE-GAIN	FOCAL	2	"ADCY4,LTB4R"
TCGA.AG.A00Y.01A	14	24882163	24900629	9	1.1407	LARGE-GAIN	FOCAL	3	"CBLN3,KHNYN,NYNRIN"
TCGA.A6.3808.01A	14	24905239	26949136	37	1.0521	LARGE-GAIN	FOCAL	8	"CMA1,CTSG,GZMB,GZMH,KHNYN,NOVA1,SDR39U1,STXBP6"
TCGA.AA.A00N.01A	14	24911329	26949136	31	1.2219	LARGE-GAIN	FOCAL	7	"CMA1,CTSG,GZMB,GZMH,NOVA1,SDR39U1,STXBP6"
TCGA.AA.A010.01A	14	25042824	25103254	14	0.9413	LARGE-GAIN	FOCAL	3	"CTSG,GZMB,GZMH"
TCGA.AG.3902	14	25782191	25783156	4	0.7863	LARGE-GAIN	FOCAL	0	None
TCGA.AD.6965	14	28340835	28356160	3	0.8152	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	14	32328255	32560448	3	1.5617	LARGE-GAIN	FOCAL	2	"ARHGAP5,NUBPL"
TCGA.A6.6649	14	32728232	34195935	812	1.0402	LARGE-GAIN	FOCAL	2	"AKAP6,NPAS3"
TCGA.AZ.4684.01A	14	33014388	33165148	7	1.1076	LARGE-GAIN	FOCAL	1	AKAP6
TCGA.AA.3941	14	33907746	33934669	32	0.7289	LARGE-GAIN	FOCAL	1	NPAS3
TCGA.AG.3906.01A	14	34243512	34395044	6	0.8073	LARGE-GAIN	FOCAL	2	"EGLN3,NPAS3"
TCGA.AA.3941	14	34899299	35626996	112	0.878	LARGE-GAIN	FOCAL	9	"BAZ1A,CFL2,EAPP,FAM177A1,KIAA0391,PPP2R3C,SNX6,SPTSSA,SRP54"
TCGA.AG.3594	14	34957432	35111592	24	0.7834	LARGE-GAIN	FOCAL	2	"EAPP,SNX6"
TCGA.AA.A00D.01A	14	35331213	35576448	27	1.14	LARGE-GAIN	FOCAL	4	"BAZ1A,FAM177A1,PPP2R3C,SRP54"
TCGA.AA.A00A.01A	14	35465868	35577306	26	0.8028	LARGE-GAIN	FOCAL	3	"FAM177A1,PPP2R3C,SRP54"
TCGA.AA.A010.01A	14	35546293	35761623	23	0.7289	LARGE-GAIN	FOCAL	4	"FAM177A1,KIAA0391,PPP2R3C,PSMA6"
TCGA.AA.A00D.01A	14	35577306	36277889	67	0.6943	LARGE-GAIN	FOCAL	6	"INSM2,KIAA0391,NFKBIA,PPP2R3C,PSMA6,RALGAPA1"
TCGA.AA.A00N.01A	14	36039772	36244794	37	0.8051	LARGE-GAIN	FOCAL	1	RALGAPA1
TCGA.AA.3862.01A	14	36096264	36158995	17	1.536	LARGE-GAIN	FOCAL	1	RALGAPA1
TCGA.AA.A00A.01A	14	36229983	36777266	19	0.7542	LARGE-GAIN	FOCAL	3	"BRMS1L,MBIP,RALGAPA1"
TCGA.AA.A00D.01A	14	36295684	36333030	6	1.3723	LARGE-GAIN	FOCAL	1	BRMS1L
TCGA.A6.6649	14	36585585	36758833	62	1.7702	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6649	14	36765775	38174457	509	1.2465	LARGE-GAIN	FOCAL	8	"FOXA1,MBIP,MIPOL1,NKX2-1,NKX2-8,PAX9,SFTA3,SLC25A21"
TCGA.AA.A00N.01A	14	36768241	36946127	10	1.0839	LARGE-GAIN	FOCAL	2	"MBIP,SFTA3"
TCGA.AA.A010.01A	14	37050055	37135635	5	1.4545	LARGE-GAIN	FOCAL	2	"NKX2-8,PAX9"
TCGA.AA.A00N.01A	14	37180481	37969091	17	0.8184	LARGE-GAIN	FOCAL	2	"MIPOL1,SLC25A21"
TCGA.A6.6649	14	38176040	38313372	28	0.9618	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	14	38273866	38311353	8	1.0034	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6649	14	38314058	38325661	4	1.4492	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6649	14	38329935	39098110	219	1.8037	LARGE-GAIN	FOCAL	2	"CLEC14A,SSTR1"
TCGA.A6.6649	14	39114660	39871016	192	1.353	LARGE-GAIN	FOCAL	7	"CTAGE5,FBXO33,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AA.3941	14	39473873	39912161	88	0.738	LARGE-GAIN	FOCAL	7	"CTAGE5,FBXO33,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AA.A00D.01A	14	39508181	39591637	23	1.109	LARGE-GAIN	FOCAL	2	"GEMIN2,SEC23A"
TCGA.AA.A00D.01A	14	39594146	39645267	12	0.706	LARGE-GAIN	FOCAL	3	"GEMIN2,PNN,TRAPPC6B"
TCGA.AA.A00D.01A	14	39645666	39787119	27	1.1463	LARGE-GAIN	FOCAL	3	"CTAGE5,MIA2,PNN"
TCGA.AG.3906.01A	14	39746111	39771291	8	1.0162	LARGE-GAIN	FOCAL	1	CTAGE5
TCGA.AA.A00N.01A	14	39772617	44976386	25	0.8111	LARGE-GAIN	FOCAL	4	"CTAGE5,FBXO33,FSCB,LRFN5"
TCGA.CK.5914.01A	14	39787119	39819254	8	0.6934	LARGE-GAIN	FOCAL	1	CTAGE5
TCGA.A6.6649	14	39872165	40562449	186	1.9827	LARGE-GAIN	FOCAL	1	FBXO33
TCGA.A6.6649	14	40565831	41024501	154	1.1046	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6649	14	41024955	41853508	248	1.6303	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	14	45583372	45584002	3	2.1035	LARGE-GAIN	FOCAL	1	PRPF39
TCGA.AZ.4684.01A	14	45583372	45584002	3	2.4101	LARGE-GAIN	FOCAL	1	PRPF39
TCGA.AA.3846	14	46311001	46472040	58	1.3708	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	14	47120267	47770584	17	0.894	LARGE-GAIN	FOCAL	2	"MDGA2,RPL10L"
TCGA.AA.3509.01A	14	47324190	47770584	13	1.2586	LARGE-GAIN	FOCAL	1	MDGA2
TCGA.AZ.4684.01A	14	47324190	48143667	14	1.2391	LARGE-GAIN	FOCAL	1	MDGA2
TCGA.CK.5914.01A	14	47342589	47351225	4	0.9114	LARGE-GAIN	FOCAL	1	MDGA2
TCGA.AG.A00Y.01A	14	50611841	50616709	3	2.6856	LARGE-GAIN	FOCAL	1	SOS2
TCGA.AG.A00Y.01A	14	50790691	50809584	10	2.0139	LARGE-GAIN	FOCAL	2	"ATP5S,CDKL1"
TCGA.CK.5914.01A	14	50892562	50971445	26	0.7735	LARGE-GAIN	FOCAL	1	MAP4K5
TCGA.AA.3509.01A	14	50901075	50910366	7	1.0321	LARGE-GAIN	FOCAL	1	MAP4K5
TCGA.AA.A010.01A	14	51221267	51259381	15	0.8906	LARGE-GAIN	FOCAL	1	NIN
TCGA.A6.6649	14	51835120	52660191	456	0.8219	LARGE-GAIN	FOCAL	4	"C14orf166,FRMD6,GNG2,NID2"
TCGA.AA.A00N.01A	14	52477567	52509489	13	0.8563	LARGE-GAIN	FOCAL	1	NID2
TCGA.A6.6649	14	52660516	52664804	3	1.5577	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6649	14	52667413	52703870	14	0.9289	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	14	52957063	53251164	47	0.7577	LARGE-GAIN	FOCAL	6	"ERO1L,GNPNAT1,GPR137C,PSMC6,STYX,TXNDC16"
TCGA.AA.A00N.01A	14	53521109	53529634	5	1.3014	LARGE-GAIN	FOCAL	1	DDHD1
TCGA.NH.A6GC	14	54631430	54634339	3	1.3196	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	14	54875384	54948794	14	1.0512	LARGE-GAIN	FOCAL	3	"CDKN3,CNIH1,GMFB"
TCGA.DM.A28M.01A	14	54907909	54948794	5	1.6283	LARGE-GAIN	FOCAL	2	"CNIH1,GMFB"
TCGA.AA.3509.01A	14	54944740	55168783	13	0.8484	LARGE-GAIN	FOCAL	3	"CGRRF1,GMFB,SAMD4A"
TCGA.AG.A01W.01A	14	55207162	55217060	8	0.8245	LARGE-GAIN	FOCAL	1	SAMD4A
TCGA.AA.A00N.01A	14	56084631	56763296	43	1.0002	LARGE-GAIN	FOCAL	2	"KTN1,PELI2"
TCGA.AA.3509.01A	14	56103112	56108343	5	1.8555	LARGE-GAIN	FOCAL	1	KTN1
TCGA.AZ.4684.01A	14	56103112	56108343	5	2.0163	LARGE-GAIN	FOCAL	1	KTN1
TCGA.DM.A28M.01A	14	56103919	56108343	7	1.9175	LARGE-GAIN	FOCAL	1	KTN1
TCGA.CK.5914.01A	14	56145040	57046603	11	0.7307	LARGE-GAIN	FOCAL	3	"KTN1,PELI2,TMEM260"
TCGA.DM.A28M.01A	14	57684657	57688975	3	1.7741	LARGE-GAIN	FOCAL	1	EXOC5
TCGA.AA.A00N.01A	14	57938026	58599761	20	0.7408	LARGE-GAIN	FOCAL	3	"C14orf105,C14orf37,SLC35F4"
TCGA.AG.3906.01A	14	58669523	58677973	4	1.1133	LARGE-GAIN	FOCAL	1	ACTR10
TCGA.AA.3862.01A	14	58899042	58934434	12	1.599	LARGE-GAIN	FOCAL	1	KIAA0586
TCGA.AA.A00N.01A	14	59730156	59835320	24	1.0179	LARGE-GAIN	FOCAL	1	DAAM1
TCGA.AZ.4684.01A	14	60758042	60938066	10	1.5814	LARGE-GAIN	FOCAL	2	"C14orf39,PPM1A"
TCGA.DM.A28M.01A	14	60921691	60936224	7	1.2043	LARGE-GAIN	FOCAL	1	C14orf39
TCGA.AA.A00D.01A	14	62193387	62261618	20	0.9739	LARGE-GAIN	FOCAL	2	"HIF1A,SNAPC1"
TCGA.AA.3861.01A	14	64447657	64625326	68	0.8752	LARGE-GAIN	FOCAL	1	SYNE2
TCGA.AA.A010.01A	14	64675429	64894003	37	0.7484	LARGE-GAIN	FOCAL	3	"ESR2,MTHFD1,SYNE2"
TCGA.AA.3861.01A	14	64935061	64988616	10	1.1381	LARGE-GAIN	FOCAL	3	"AKAP5,ZBTB1,ZBTB25"
TCGA.AA.3509.01A	14	64988616	64998521	4	1.1321	LARGE-GAIN	FOCAL	1	ZBTB1
TCGA.AZ.4684.01A	14	64988616	64998521	4	1.2328	LARGE-GAIN	FOCAL	1	ZBTB1
TCGA.AA.A010.01A	14	65007521	65016679	3	0.7653	LARGE-GAIN	FOCAL	2	"HSPA2,PPP1R36"
TCGA.AA.A00N.01A	14	65233325	65544470	57	0.6934	LARGE-GAIN	FOCAL	7	"CHURC1,CHURC1-FNTB,FNTB,GPX2,MAX,RAB15,SPTB"
TCGA.AA.A010.01A	14	65478983	65937776	17	0.7207	LARGE-GAIN	FOCAL	4	"CHURC1-FNTB,FNTB,FUT8,MAX"
TCGA.AA.3509.01A	14	66082648	67626081	35	0.7992	LARGE-GAIN	FOCAL	2	"FUT8,GPHN"
TCGA.AZ.4684.01A	14	66096171	67635600	35	0.868	LARGE-GAIN	FOCAL	2	"FUT8,GPHN"
TCGA.DM.A28M.01A	14	66199900	67626081	29	0.7801	LARGE-GAIN	FOCAL	2	"FUT8,GPHN"
TCGA.AA.3986	14	67197949	67223082	3	1.3765	LARGE-GAIN	FOCAL	1	GPHN
TCGA.AA.A00N.01A	14	68159604	68251735	33	0.88	LARGE-GAIN	FOCAL	3	"RDH11,RDH12,ZFYVE26"
TCGA.CK.5914.01A	14	68353709	68934832	4	1.0274	LARGE-GAIN	FOCAL	1	RAD51B
TCGA.DC.6681	14	68807131	68813114	4	1.2585	LARGE-GAIN	FOCAL	1	RAD51B
TCGA.AA.A010.01A	14	69726981	69866038	19	0.9412	LARGE-GAIN	FOCAL	3	"ERH,GALNT16,SLC39A9"
TCGA.AA.3846	14	70178980	70636850	213	1.4321	LARGE-GAIN	FOCAL	5	"SLC10A1,SLC8A3,SMOC1,SRSF5,SUSD6"
TCGA.AA.A00D.01A	14	70234837	70252777	9	1.0359	LARGE-GAIN	FOCAL	2	"SLC10A1,SRSF5"
TCGA.AA.A00N.01A	14	70252777	70517688	17	1.0416	LARGE-GAIN	FOCAL	3	"SLC10A1,SLC8A3,SMOC1"
TCGA.AG.3909.01A	14	70418823	70517688	14	0.88	LARGE-GAIN	FOCAL	2	"SLC8A3,SMOC1"
TCGA.AA.A010.01A	14	70477434	70518687	9	1.0161	LARGE-GAIN	FOCAL	2	"SLC8A3,SMOC1"
TCGA.AA.A00N.01A	14	71137733	73238394	96	0.882	LARGE-GAIN	FOCAL	6	"DPF3,MAP3K9,PCNX,RGS6,SIPA1L1,TTC9"
TCGA.AZ.4684.01A	14	71476300	71514486	14	0.9127	LARGE-GAIN	FOCAL	1	PCNX
TCGA.AA.3509.01A	14	71513679	71514486	2	2.0576	LARGE-GAIN	FOCAL	1	PCNX
TCGA.AA.A00N.01A	14	73423055	73464487	11	1.0632	LARGE-GAIN	FOCAL	2	"DCAF4,ZFYVE1"
TCGA.AA.A00D.01A	14	73448447	73683787	30	0.8158	LARGE-GAIN	FOCAL	3	"PSEN1,RBM25,ZFYVE1"
TCGA.AA.A00A.01A	14	73544029	73683787	24	0.7373	LARGE-GAIN	FOCAL	2	"PSEN1,RBM25"
TCGA.DM.A1D6	14	73664852	73813659	54	0.7797	LARGE-GAIN	FOCAL	3	"NUMB,PAPLN,PSEN1"
TCGA.AA.A00D.01A	14	74327215	74358798	9	1.1698	LARGE-GAIN	FOCAL	2	"PTGR2,ZNF410"
TCGA.A6.3808.01A	14	74360468	74416994	20	0.9492	LARGE-GAIN	FOCAL	3	"COQ6,FAM161B,ZNF410"
TCGA.AA.A010.01A	14	74387632	74422456	17	1.1072	LARGE-GAIN	FOCAL	3	"COQ6,FAM161B,ZNF410"
TCGA.A6.3808.01A	14	74433574	74454567	13	0.7131	LARGE-GAIN	FOCAL	1	ENTPD5
TCGA.AG.A032.01A	14	74762996	74764581	2	2.9274	LARGE-GAIN	FOCAL	1	ABCD4
TCGA.AA.A010.01A	14	74959840	74995629	28	0.7858	LARGE-GAIN	FOCAL	3	"ISCA2,LTBP2,NPC2"
TCGA.AA.A00N.01A	14	74974625	75022155	21	1.2077	LARGE-GAIN	FOCAL	1	LTBP2
TCGA.AA.A010.01A	14	74999092	75052520	8	1.2346	LARGE-GAIN	FOCAL	1	LTBP2
TCGA.AA.A00D.01A	14	75576950	75602413	10	0.998	LARGE-GAIN	FOCAL	2	"NEK9,TMED10"
TCGA.A6.3808.01A	14	76090906	76662169	66	0.8834	LARGE-GAIN	FOCAL	6	"C14orf1,FLVCR2,GPATCH2L,IFT43,TGFB3,TTLL5"
TCGA.AA.A00N.01A	14	76149845	76429612	31	0.8156	LARGE-GAIN	FOCAL	2	"TGFB3,TTLL5"
TCGA.AG.3891.01A	14	77492468	77493478	2	0.9331	LARGE-GAIN	FOCAL	1	IRF2BPL
TCGA.AA.A010.01A	14	77685105	77708643	11	0.6789	LARGE-GAIN	FOCAL	1	TMEM63C
TCGA.AA.A00D.01A	14	77817968	77934724	35	0.754	LARGE-GAIN	FOCAL	5	"AHSA1,NOXRED1,SAMD15,TMED8,VIPAS39"
TCGA.AA.A00D.01A	14	78198781	78235842	10	0.799	LARGE-GAIN	FOCAL	2	"C14orf178,SNW1"
TCGA.AG.3909.01A	14	78325387	79454328	18	0.7226	LARGE-GAIN	FOCAL	2	"ADCK1,NRXN3"
TCGA.AA.A00N.01A	14	78325387	81662425	65	0.9535	LARGE-GAIN	FOCAL	6	"ADCK1,CEP128,DIO2,GTF2A1,NRXN3,TSHR"
TCGA.AA.3941	14	78747215	78766813	10	0.7349	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	14	81209372	81609952	26	1.5237	LARGE-GAIN	FOCAL	2	"CEP128,TSHR"
TCGA.AA.A00N.01A	14	81736901	86092189	30	0.7533	LARGE-GAIN	FOCAL	3	"FLRT2,SEL1L,STON2"
TCGA.CK.5914.01A	14	81837313	81864603	3	0.9571	LARGE-GAIN	FOCAL	1	STON2
TCGA.DY.A1DC	14	83304802	83312592	13	1.0541	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	14	85004131	85014880	8	1.1694	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	14	88401055	88434650	10	0.777	LARGE-GAIN	FOCAL	1	GALC
TCGA.DM.A1HB	14	88419357	88428084	3	0.8283	LARGE-GAIN	FOCAL	1	GALC
TCGA.AA.A00D.01A	14	88654284	89068221	49	0.7353	LARGE-GAIN	FOCAL	4	"KCNK10,PTPN21,SPATA7,ZC3H14"
TCGA.AA.A00N.01A	14	89310106	89747226	13	0.9153	LARGE-GAIN	FOCAL	2	"FOXN3,TTC8"
TCGA.AA.A01Q.01A	14	90758991	90863479	10	0.7872	LARGE-GAIN	FOCAL	2	"CALM1,NRDE2"
TCGA.AZ.4684.01A	14	92264596	92278638	4	1.5642	LARGE-GAIN	FOCAL	1	TC2N
TCGA.DM.A28M.01A	14	92264596	92279989	6	1.5148	LARGE-GAIN	FOCAL	1	TC2N
TCGA.AG.3909.01A	14	92336541	92361245	7	0.8802	LARGE-GAIN	FOCAL	1	FBLN5
TCGA.AA.A00D.01A	14	92559541	92625359	19	0.8297	LARGE-GAIN	FOCAL	3	"ATXN3,CPSF2,NDUFB1"
TCGA.AM.5820	14	92958305	92960237	5	1.0762	LARGE-GAIN	FOCAL	1	SLC24A4
TCGA.AA.A024.01A	14	93118535	93119036	2	3.9513	LARGE-GAIN	FOCAL	1	RIN3
TCGA.AA.A00D.01A	14	93151295	93286016	20	0.8607	LARGE-GAIN	FOCAL	3	"GOLGA5,LGMN,RIN3"
TCGA.AG.3906.01A	14	93175969	93198946	9	1.278	LARGE-GAIN	FOCAL	1	LGMN
TCGA.AA.3861.01A	14	93273051	93299450	8	1.8386	LARGE-GAIN	FOCAL	1	GOLGA5
TCGA.AA.A00D.01A	14	93673599	93712194	13	0.8668	LARGE-GAIN	FOCAL	2	"BTBD7,UBR7"
TCGA.AA.A00N.01A	14	93708587	94187743	60	0.7448	LARGE-GAIN	FOCAL	4	"BTBD7,COX8C,PRIMA1,UNC79"
TCGA.AA.3509.01A	14	94693560	94741674	21	0.7188	LARGE-GAIN	FOCAL	1	PPP4R4
TCGA.AZ.4684.01A	14	94693560	94741674	21	0.903	LARGE-GAIN	FOCAL	1	PPP4R4
TCGA.AG.3909.01A	14	94776063	95085505	30	0.735	LARGE-GAIN	FOCAL	9	"SERPINA1,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9"
TCGA.F4.6570	14	95064163	95066551	3	1.0133	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	14	96782823	96829114	20	0.9015	LARGE-GAIN	FOCAL	1	ATG2B
TCGA.AZ.4684.01A	14	96782823	96851822	22	0.9654	LARGE-GAIN	FOCAL	2	"ATG2B,GSKIP"
TCGA.DM.A28M.01A	14	96797664	96809428	6	1.2038	LARGE-GAIN	FOCAL	1	ATG2B
TCGA.DM.A28M.01A	14	96993730	97409896	29	0.7235	LARGE-GAIN	FOCAL	2	"PAPOLA,VRK1"
TCGA.CK.5914.01A	14	96997765	99182490	29	0.79	LARGE-GAIN	FOCAL	3	"C14orf177,PAPOLA,VRK1"
TCGA.AA.A00N.01A	14	96998665	99183382	29	0.8179	LARGE-GAIN	FOCAL	3	"C14orf177,PAPOLA,VRK1"
TCGA.AA.3509.01A	14	97002169	97326842	21	0.8813	LARGE-GAIN	FOCAL	2	"PAPOLA,VRK1"
TCGA.AZ.4684.01A	14	97002169	99182490	26	0.844	LARGE-GAIN	FOCAL	3	"C14orf177,PAPOLA,VRK1"
TCGA.G4.6302	14	98237962	98240456	8	0.9012	LARGE-GAIN	FOCAL	0	None
TCGA.A6.6780	14	99150357	99150810	3	1.0111	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3902	14	99321473	99325742	4	0.9438	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	14	100118523	100158057	8	0.8126	LARGE-GAIN	FOCAL	2	"CYP46A1,HHIPL1"
TCGA.AA.A00N.01A	14	100531747	100594828	7	0.9492	LARGE-GAIN	FOCAL	1	EVL
TCGA.AM.5820	14	101686879	101718645	17	0.6875	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	14	101700617	101717178	4	0.8634	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	14	102276228	102391428	14	0.6946	LARGE-GAIN	FOCAL	1	PPP2R5C
TCGA.AA.A00Z.01A	14	102474507	102482639	3	2.5413	LARGE-GAIN	FOCAL	1	DYNC1H1
TCGA.AG.3605.01A	14	102474507	102483398	4	3.3372	LARGE-GAIN	FOCAL	1	DYNC1H1
TCGA.AA.A010.01A	14	102829084	102931430	17	0.8023	LARGE-GAIN	FOCAL	2	"CINP,TECPR2"
TCGA.AG.3906.01A	14	103573729	103807266	16	0.969	LARGE-GAIN	FOCAL	3	"EIF5,EXOC3L4,TNFAIP2"
TCGA.AG.3891.01A	14	103802134	103807266	9	0.7624	LARGE-GAIN	FOCAL	1	EIF5
TCGA.AA.3939.01A	14	105692394	105695106	3	2.4711	LARGE-GAIN	FOCAL	1	BRF1
TCGA.AA.A02K.01A	14	105692944	105695107	2	1.8561	LARGE-GAIN	FOCAL	1	BRF1
TCGA.AA.A00N.01A	14	106405602	106725295	21	1.1666	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	14	106452714	106573535	11	1.9094	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	14	106539031	106552618	3	2.0846	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	14	106586208	107282751	48	0.6905	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	14	106962962	107282751	23	0.7808	LARGE-GAIN	FOCAL	0	None
TCGA.DC.5337	15	20143408	20192010	6	0.9845	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6570	15	20577684	22582901	8	0.8521	LARGE-GAIN	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.A010.01A	15	20588543	20666513	9	0.745	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	15	21440203	21443828	4	1.5799	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	15	22765682	23738587	107	0.7236	LARGE-GAIN	FOCAL	6	"CYFIP1,GOLGA6L2,GOLGA6L22,NIPA1,NIPA2,TUBGCP5"
TCGA.AA.A00A.01A	15	22840225	22935810	25	0.7632	LARGE-GAIN	FOCAL	2	"CYFIP1,TUBGCP5"
TCGA.CL.5917	15	23226467	23868060	84	1.0782	LARGE-GAIN	FOCAL	3	"GOLGA6L2,GOLGA6L22,MKRN3"
TCGA.AG.3906.01A	15	27114342	27128248	3	0.9389	LARGE-GAIN	FOCAL	1	GABRA5
TCGA.AA.3861.01A	15	28375267	29346470	68	1.1053	LARGE-GAIN	FOCAL	3	"APBA2,GOLGA8M,HERC2"
TCGA.AA.3862.01A	15	28375267	29367067	69	0.97	LARGE-GAIN	FOCAL	3	"APBA2,GOLGA8M,HERC2"
TCGA.AA.A00N.01A	15	28517998	29346470	9	0.9367	LARGE-GAIN	FOCAL	3	"APBA2,GOLGA8M,HERC2"
TCGA.AA.3930.01A	15	29390650	29393775	2	1.8359	LARGE-GAIN	FOCAL	1	APBA2
TCGA.AA.3862.01A	15	30659569	30927232	10	1.4906	LARGE-GAIN	FOCAL	4	"ARHGAP11B,CHRFAM7A,GOLGA8H,GOLGA8R"
TCGA.AA.3861.01A	15	30659569	31196857	12	1.1967	LARGE-GAIN	FOCAL	5	"ARHGAP11B,CHRFAM7A,FAN1,GOLGA8H,GOLGA8R"
TCGA.AG.A00C.01A	15	31196857	31202794	3	1.0015	LARGE-GAIN	FOCAL	1	FAN1
TCGA.AA.A00N.01A	15	31818501	31947247	6	1.6441	LARGE-GAIN	FOCAL	1	OTUD7A
TCGA.AA.3861.01A	15	31851144	32928428	23	1.1165	LARGE-GAIN	FOCAL	6	"ARHGAP11A,CHRNA7,GOLGA8K,GOLGA8N,GOLGA8O,OTUD7A"
TCGA.AA.A00A.01A	15	32393492	33024481	13	0.8158	LARGE-GAIN	FOCAL	7	"ARHGAP11A,CHRNA7,GOLGA8K,GOLGA8N,GOLGA8O,GREM1,SCG5"
TCGA.AA.3862.01A	15	32449781	32928428	15	1.2085	LARGE-GAIN	FOCAL	5	"ARHGAP11A,CHRNA7,GOLGA8K,GOLGA8N,GOLGA8O"
TCGA.AA.A00N.01A	15	33357136	34080368	69	1.0416	LARGE-GAIN	FOCAL	2	"FMN1,RYR3"
TCGA.A6.3808.01A	15	37390121	38591537	13	1.7551	LARGE-GAIN	FOCAL	3	"MEIS2,SPRED1,TMCO5A"
TCGA.AA.A00N.01A	15	38228473	38990332	44	0.7845	LARGE-GAIN	FOCAL	5	"C15orf53,FAM98B,RASGRP1,SPRED1,TMCO5A"
TCGA.AG.A01W.01A	15	39844331	39854740	3	0.7146	LARGE-GAIN	FOCAL	0	None
TCGA.AF.3914.01A	15	39874353	39877616	4	0.781	LARGE-GAIN	FOCAL	1	THBS1
TCGA.AA.A00L.01A	15	40453348	40512718	22	0.7751	LARGE-GAIN	FOCAL	2	"BUB1B,PAK6"
TCGA.AG.A015.01A	15	40750636	40758090	5	0.7103	LARGE-GAIN	FOCAL	1	BAHD1
TCGA.AA.A010.01A	15	40846158	40902383	12	0.9128	LARGE-GAIN	FOCAL	3	"C15orf57,CASC5,RPUSD2"
TCGA.AA.A00L.01A	15	40990899	41030130	13	0.9106	LARGE-GAIN	FOCAL	2	"RAD51,RMDN3"
TCGA.AA.3819	15	41057794	41067057	3	1.6914	LARGE-GAIN	FOCAL	3	"C15orf62,DNAJC17,GCHFR"
TCGA.AG.A01W.01A	15	41086572	41096550	3	1.0008	LARGE-GAIN	FOCAL	1	DNAJC17
TCGA.AA.A00N.01A	15	41099508	41120553	11	1.1858	LARGE-GAIN	FOCAL	3	"DNAJC17,PPP1R14D,ZFYVE19"
TCGA.AA.A00L.01A	15	41337054	41793609	64	0.7463	LARGE-GAIN	FOCAL	8	"CHP1,EXD1,INO80,ITPKA,NDUFAF1,NUSAP1,OIP5,RTF1"
TCGA.AA.A00K.01A	15	41340342	41817162	79	0.6809	LARGE-GAIN	FOCAL	10	"CHP1,EXD1,INO80,ITPKA,LTK,NDUFAF1,NUSAP1,OIP5,RPAP1,RTF1"
TCGA.AA.A010.01A	15	41476117	41571459	16	0.7836	LARGE-GAIN	FOCAL	2	"CHP1,EXD1"
TCGA.AA.A00A.01A	15	41554912	41772762	27	0.8438	LARGE-GAIN	FOCAL	5	"CHP1,NDUFAF1,NUSAP1,OIP5,RTF1"
TCGA.AG.3891.01A	15	41663708	41680583	5	1.3338	LARGE-GAIN	FOCAL	2	"NDUFAF1,NUSAP1"
TCGA.AG.3906.01A	15	41796192	41797894	4	1.2343	LARGE-GAIN	FOCAL	1	LTK
TCGA.AA.A00L.01A	15	41809783	41829101	20	0.6884	LARGE-GAIN	FOCAL	1	RPAP1
TCGA.AA.3930.01A	15	41813908	41817162	6	1.1226	LARGE-GAIN	FOCAL	1	RPAP1
TCGA.AA.A010.01A	15	41961066	42028367	12	0.8522	LARGE-GAIN	FOCAL	1	MGA
TCGA.AA.A010.01A	15	42052469	42067423	7	0.8825	LARGE-GAIN	FOCAL	2	"MAPKBP1,MGA"
TCGA.AA.A010.01A	15	42302255	42448600	38	0.9497	LARGE-GAIN	FOCAL	3	"PLA2G4D,PLA2G4E,PLA2G4F"
TCGA.AA.A00N.01A	15	42434151	42448600	17	1.4213	LARGE-GAIN	FOCAL	1	PLA2G4F
TCGA.AA.A00Q.01A	15	42509920	42598691	25	0.691	LARGE-GAIN	FOCAL	2	"GANC,TMEM87A"
TCGA.CK.5914.01A	15	42651973	42701922	18	0.8891	LARGE-GAIN	FOCAL	1	CAPN3
TCGA.CK.5914.01A	15	42734233	42749134	7	0.756	LARGE-GAIN	FOCAL	1	ZNF106
TCGA.AG.A01W.01A	15	42738518	42748429	7	0.6807	LARGE-GAIN	FOCAL	1	ZNF106
TCGA.AA.A00L.01A	15	42803984	42858806	17	0.8927	LARGE-GAIN	FOCAL	3	"HAUS2,LRRC57,SNAP23"
TCGA.AA.A00L.01A	15	43250188	43282172	11	0.9599	LARGE-GAIN	FOCAL	1	UBR1
TCGA.A6.3808.01A	15	43502486	43576965	23	1.0242	LARGE-GAIN	FOCAL	3	"EPB42,TGM5,TGM7"
TCGA.AA.A010.01A	15	43552222	43687733	43	0.7698	LARGE-GAIN	FOCAL	6	"ADAL,LCMT2,TGM5,TGM7,TUBGCP4,ZSCAN29"
TCGA.AA.A00A.01A	15	43620625	43641063	10	1.0575	LARGE-GAIN	FOCAL	2	"ADAL,LCMT2"
TCGA.AA.A00D.01A	15	43627236	43641063	8	0.756	LARGE-GAIN	FOCAL	1	ADAL
TCGA.AA.A00L.01A	15	43627236	43641063	8	1.0491	LARGE-GAIN	FOCAL	1	ADAL
TCGA.A6.3808.01A	15	43687232	43803148	42	0.8175	LARGE-GAIN	FOCAL	2	"TP53BP1,TUBGCP4"
TCGA.AA.A00N.01A	15	43704831	43714063	8	1.3687	LARGE-GAIN	FOCAL	1	TP53BP1
TCGA.AA.3930.01A	15	43873149	43891305	6	1.0666	LARGE-GAIN	FOCAL	2	"CKMT1B,PPIP5K1"
TCGA.AA.3861.01A	15	43873149	43987885	33	1.6055	LARGE-GAIN	FOCAL	5	"CATSPER2,CKMT1A,CKMT1B,PPIP5K1,STRC"
TCGA.AA.3862.01A	15	43873149	43990190	34	1.7396	LARGE-GAIN	FOCAL	5	"CATSPER2,CKMT1A,CKMT1B,PPIP5K1,STRC"
TCGA.AF.3914.01A	15	43875585	43892146	6	1.0119	LARGE-GAIN	FOCAL	3	"CKMT1B,PPIP5K1,STRC"
TCGA.AA.A00D.01A	15	43928192	44062660	18	0.7073	LARGE-GAIN	FOCAL	3	"CATSPER2,CKMT1A,PDIA3"
TCGA.AG.4009.01A	15	43987885	44038696	5	0.8485	LARGE-GAIN	FOCAL	2	"CKMT1A,PDIA3"
TCGA.AG.3891.01A	15	44120202	44143238	7	0.7059	LARGE-GAIN	FOCAL	1	WDR76
TCGA.AA.A00N.01A	15	44858001	44875981	9	1.167	LARGE-GAIN	FOCAL	1	SPG11
TCGA.AA.A00L.01A	15	44890777	44952638	21	0.7692	LARGE-GAIN	FOCAL	1	SPG11
TCGA.A6.3808.01A	15	44959252	45250564	21	1.1471	LARGE-GAIN	FOCAL	4	"B2M,C15orf43,PATL2,TRIM69"
TCGA.AA.A00L.01A	15	45250564	45386722	14	0.7421	LARGE-GAIN	FOCAL	3	"C15orf43,DUOX2,SORD"
TCGA.AG.A00Y.01A	15	45389812	45390131	2	5.9372	LARGE-GAIN	FOCAL	1	DUOX2
TCGA.A6.3808.01A	15	45434126	45656930	43	0.7502	LARGE-GAIN	FOCAL	4	"DUOX1,GATM,SHF,SLC28A2"
TCGA.AA.3509.01A	15	48435065	48459476	12	1.4048	LARGE-GAIN	FOCAL	1	MYEF2
TCGA.AA.A00N.01A	15	48499900	48566728	19	0.8441	LARGE-GAIN	FOCAL	1	SLC12A1
TCGA.AA.A00L.01A	15	48559708	48703145	16	0.6899	LARGE-GAIN	FOCAL	3	"DUT,FBN1,SLC12A1"
TCGA.CK.5914.01A	15	48704736	48744721	21	0.9688	LARGE-GAIN	FOCAL	1	FBN1
TCGA.AA.A00N.01A	15	48704736	49135584	86	0.9374	LARGE-GAIN	FOCAL	3	"CEP152,FBN1,SHC4"
TCGA.AA.3941	15	50460165	51153944	143	0.6862	LARGE-GAIN	FOCAL	7	"GABPB1,HDC,SLC27A2,SPPL2A,TRPM7,USP50,USP8"
TCGA.AA.A00A.01A	15	50489650	50526014	8	0.9516	LARGE-GAIN	FOCAL	1	SLC27A2
TCGA.AA.A01Q.01A	15	50544586	50557715	8	0.847	LARGE-GAIN	FOCAL	1	HDC
TCGA.CK.5914.01A	15	50550550	50557715	3	1.5138	LARGE-GAIN	FOCAL	1	HDC
TCGA.AA.A00L.01A	15	50731221	50782011	12	1.1167	LARGE-GAIN	FOCAL	1	USP8
TCGA.AA.3509.01A	15	51806616	51857243	11	1.3224	LARGE-GAIN	FOCAL	1	DMXL2
TCGA.AA.A00A.01A	15	52402008	52425524	6	1.0657	LARGE-GAIN	FOCAL	2	"BCL2L10,GNB5"
TCGA.AG.3906.01A	15	52564729	52574937	6	1.1306	LARGE-GAIN	FOCAL	1	MYO5C
TCGA.AA.A00N.01A	15	52632342	52699442	24	0.9841	LARGE-GAIN	FOCAL	1	MYO5A
TCGA.AA.A00N.01A	15	53889227	54860001	45	0.8837	LARGE-GAIN	FOCAL	2	"UNC13C,WDR72"
TCGA.AA.3509.01A	15	54556324	55477494	26	1.0377	LARGE-GAIN	FOCAL	2	"RSL24D1,UNC13C"
TCGA.AA.3509.01A	15	56393509	56974400	34	1.038	LARGE-GAIN	FOCAL	4	"MNS1,RFX7,TEX9,ZNF280D"
TCGA.DM.A28M.01A	15	56726318	56738992	4	0.9419	LARGE-GAIN	FOCAL	2	"MNS1,TEX9"
TCGA.AA.A00A.01A	15	57554270	57976566	35	0.7961	LARGE-GAIN	FOCAL	4	"CGNL1,GCOM1,MYZAP,TCF12"
TCGA.AA.A00L.01A	15	57565221	58006717	36	0.7803	LARGE-GAIN	FOCAL	5	"CGNL1,GCOM1,MYZAP,POLR2M,TCF12"
TCGA.AA.A00N.01A	15	58247333	58974353	41	0.7764	LARGE-GAIN	FOCAL	4	"ADAM10,ALDH1A2,AQP9,LIPC"
TCGA.AA.A00D.01A	15	59931250	59964794	9	0.7184	LARGE-GAIN	FOCAL	2	"BNIP2,GTF2A2"
TCGA.AG.A01W.01A	15	59986707	60001393	11	0.9251	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	15	60648056	60674493	5	1.0748	LARGE-GAIN	FOCAL	1	ANXA2
TCGA.AA.A00N.01A	15	60803373	62169116	21	0.7385	LARGE-GAIN	FOCAL	2	"RORA,VPS13C"
TCGA.CK.5914.01A	15	60919398	62167046	13	0.8417	LARGE-GAIN	FOCAL	2	"RORA,VPS13C"
TCGA.A6.3808.01A	15	60919398	62325591	76	0.8093	LARGE-GAIN	FOCAL	2	"RORA,VPS13C"
TCGA.D5.6538	15	62146968	62346055	23	0.6968	LARGE-GAIN	FOCAL	1	VPS13C
TCGA.AA.3509.01A	15	62148434	62270778	56	0.8586	LARGE-GAIN	FOCAL	1	VPS13C
TCGA.AA.A00N.01A	15	62182332	62312611	59	1.0157	LARGE-GAIN	FOCAL	1	VPS13C
TCGA.AA.A010.01A	15	62211460	62221679	8	1.1902	LARGE-GAIN	FOCAL	1	VPS13C
TCGA.AG.A01W.01A	15	62231840	62235239	6	0.963	LARGE-GAIN	FOCAL	1	VPS13C
TCGA.AA.3509.01A	15	62304238	62327117	7	1.7253	LARGE-GAIN	FOCAL	1	VPS13C
TCGA.AZ.4684.01A	15	62304238	62327117	7	1.2502	LARGE-GAIN	FOCAL	1	VPS13C
TCGA.AA.A00N.01A	15	63000674	63334982	39	0.8168	LARGE-GAIN	FOCAL	2	"TLN2,TPM1"
TCGA.AA.A010.01A	15	63000674	63340725	42	0.8683	LARGE-GAIN	FOCAL	2	"TLN2,TPM1"
TCGA.AG.A01W.01A	15	63021679	63029093	5	0.836	LARGE-GAIN	FOCAL	1	TLN2
TCGA.AF.3914.01A	15	63353007	63353868	3	1.9372	LARGE-GAIN	FOCAL	1	TPM1
TCGA.AA.A00A.01A	15	63353335	63555686	20	0.8494	LARGE-GAIN	FOCAL	4	"LACTB,RAB8B,RPS27L,TPM1"
TCGA.AA.A00N.01A	15	63918136	64275701	76	0.7552	LARGE-GAIN	FOCAL	2	"DAPK2,HERC1"
TCGA.AA.A00L.01A	15	64495229	65043698	42	0.7112	LARGE-GAIN	FOCAL	6	"CSNK1G1,KIAA0101,OAZ2,RBPMS2,TRIP4,ZNF609"
TCGA.AA.A00L.01A	15	65140772	65157067	5	0.6878	LARGE-GAIN	FOCAL	1	PLEKHO2
TCGA.CK.5914.01A	15	65218213	65242050	10	0.8631	LARGE-GAIN	FOCAL	1	ANKDD1A
TCGA.AA.A00A.01A	15	65257612	65458922	29	0.6856	LARGE-GAIN	FOCAL	8	"CLPX,KBTBD13,MTFMT,PDCD7,RASL12,SLC51B,SPG21,UBAP1L"
TCGA.AG.A01W.01A	15	65264069	65269759	3	1.3255	LARGE-GAIN	FOCAL	1	SPG21
TCGA.AG.3906.01A	15	65369124	65425268	6	1.192	LARGE-GAIN	FOCAL	3	"KBTBD13,PDCD7,UBAP1L"
TCGA.AA.A010.01A	15	65458922	65501967	13	0.9053	LARGE-GAIN	FOCAL	2	"CILP,CLPX"
TCGA.AF.3914.01A	15	65680749	65682445	4	0.825	LARGE-GAIN	FOCAL	1	IGDCC4
TCGA.AA.A010.01A	15	66206037	66420592	19	1.3393	LARGE-GAIN	FOCAL	1	MEGF11
TCGA.AA.A00Q.01A	15	66599113	66644420	19	0.7556	LARGE-GAIN	FOCAL	2	"DIS3L,TIPIN"
TCGA.AA.A010.01A	15	66618132	66813341	41	0.7388	LARGE-GAIN	FOCAL	6	"DIS3L,MAP2K1,RPL4,SNAPC5,TIPIN,ZWILCH"
TCGA.SS.A7HO	15	66725344	66726906	3	1.2769	LARGE-GAIN	FOCAL	1	MAP2K1
TCGA.AA.A010.01A	15	66844332	66857538	8	1.0887	LARGE-GAIN	FOCAL	1	LCTL
TCGA.AA.A010.01A	15	67073334	67571683	24	0.7326	LARGE-GAIN	FOCAL	4	"AAGAB,IQCH,SMAD3,SMAD6"
TCGA.AA.A00N.01A	15	67571683	67767994	16	0.9044	LARGE-GAIN	FOCAL	1	IQCH
TCGA.AA.A00N.01A	15	67873035	68098957	20	0.7225	LARGE-GAIN	FOCAL	1	MAP2K5
TCGA.AA.A00N.01A	15	68595335	69076686	44	1.0565	LARGE-GAIN	FOCAL	3	"ANP32A,CORO2B,ITGA11"
TCGA.AA.A010.01A	15	68595335	69080087	46	0.8002	LARGE-GAIN	FOCAL	3	"ANP32A,CORO2B,ITGA11"
TCGA.AA.A00A.01A	15	69708306	69745922	21	0.8968	LARGE-GAIN	FOCAL	2	"KIF23,RPLP1"
TCGA.AA.A00D.01A	15	69708306	69747457	22	0.7124	LARGE-GAIN	FOCAL	2	"KIF23,RPLP1"
TCGA.AA.A00L.01A	15	69714643	69733190	12	0.955	LARGE-GAIN	FOCAL	1	KIF23
TCGA.CK.5914.01A	15	70969362	70991838	10	0.9357	LARGE-GAIN	FOCAL	1	UACA
TCGA.AA.3509.01A	15	71276381	71329469	5	1.7007	LARGE-GAIN	FOCAL	1	LRRC49
TCGA.AZ.4684.01A	15	71276381	71329469	5	1.2262	LARGE-GAIN	FOCAL	1	LRRC49
TCGA.AA.A00N.01A	15	71447140	72050194	15	0.9454	LARGE-GAIN	FOCAL	1	THSD4
TCGA.AY.6196	15	71643786	71644430	3	2.2508	LARGE-GAIN	FOCAL	1	THSD4
TCGA.AA.A010.01A	15	72103035	72105681	6	1.1075	LARGE-GAIN	FOCAL	1	NR2E3
TCGA.AA.A00N.01A	15	72141138	72338408	40	0.7302	LARGE-GAIN	FOCAL	1	MYO9A
TCGA.AA.3509.01A	15	72225929	72260294	6	0.9643	LARGE-GAIN	FOCAL	1	MYO9A
TCGA.AF.3914.01A	15	72454302	72454566	2	2.4581	LARGE-GAIN	FOCAL	1	GRAMD2
TCGA.AG.3906.01A	15	72492784	72553850	25	0.7761	LARGE-GAIN	FOCAL	2	"PARP6,PKM"
TCGA.AG.3906.01A	15	72556829	72559719	6	1.2918	LARGE-GAIN	FOCAL	1	PARP6
TCGA.AG.A01W.01A	15	73428264	73446866	20	0.8186	LARGE-GAIN	FOCAL	1	NEO1
TCGA.AF.3914.01A	15	74473586	74476150	3	1.5424	LARGE-GAIN	FOCAL	1	STRA6
TCGA.CK.5914.01A	15	74560633	74640204	24	0.8095	LARGE-GAIN	FOCAL	2	"CCDC33,CYP11A1"
TCGA.AG.3906.01A	15	75761060	75815411	9	0.7336	LARGE-GAIN	FOCAL	1	PTPN9
TCGA.AM.5820	15	75948670	76028368	12	0.7786	LARGE-GAIN	FOCAL	3	"CSPG4,ODF3L1,SNX33"
TCGA.AG.A01W.01A	15	76272857	76273855	3	1.3481	LARGE-GAIN	FOCAL	1	NRG4
TCGA.AA.A00N.01A	15	76668466	77096824	23	0.756	LARGE-GAIN	FOCAL	1	SCAPER
TCGA.A6.3808.01A	15	76696844	77241394	32	1.0192	LARGE-GAIN	FOCAL	2	"RCN2,SCAPER"
TCGA.AA.A00N.01A	15	77363169	77771473	15	0.8904	LARGE-GAIN	FOCAL	3	"HMG20A,PEAK1,TSPAN3"
TCGA.AA.A00N.01A	15	78465887	78557051	13	0.8796	LARGE-GAIN	FOCAL	2	"ACSBG1,DNAJA4"
TCGA.AA.A00A.01A	15	78565399	78581911	9	0.9082	LARGE-GAIN	FOCAL	2	"DNAJA4,WDR61"
TCGA.AA.A00L.01A	15	78567802	78581911	7	0.9443	LARGE-GAIN	FOCAL	2	"DNAJA4,WDR61"
TCGA.AA.A00A.01A	15	78732097	78893553	34	0.749	LARGE-GAIN	FOCAL	5	"CHRNA3,CHRNA5,HYKK,IREB2,PSMA4"
TCGA.AA.A00L.01A	15	78762809	78880619	27	0.8501	LARGE-GAIN	FOCAL	4	"CHRNA5,HYKK,IREB2,PSMA4"
TCGA.AG.A00C.01A	15	78805384	78841085	12	0.7257	LARGE-GAIN	FOCAL	2	"HYKK,PSMA4"
TCGA.AM.5820	15	79045053	79064666	3	1.5178	LARGE-GAIN	FOCAL	1	ADAMTS7
TCGA.CK.5914.01A	15	81166171	81212393	13	0.7978	LARGE-GAIN	FOCAL	1	CEMIP
TCGA.AA.A010.01A	15	81212393	81241086	15	0.9622	LARGE-GAIN	FOCAL	1	CEMIP
TCGA.AA.A00N.01A	15	81517722	82533574	64	0.7215	LARGE-GAIN	FOCAL	5	"EFTUD1,IL16,MEX3B,STARD5,TMC3"
TCGA.AA.3861.01A	15	83481808	83499299	8	1.8676	LARGE-GAIN	FOCAL	1	WHAMM
TCGA.AA.A00L.01A	15	83657734	83658595	2	1.1708	LARGE-GAIN	FOCAL	2	"C15orf40,FAM103A1"
TCGA.AA.A00N.01A	15	84553801	85147108	22	1.2111	LARGE-GAIN	FOCAL	4	"ADAMTSL3,GOLGA6L4,UBE2Q2L,ZSCAN2"
TCGA.CK.5914.01A	15	84581807	84639188	4	1.2305	LARGE-GAIN	FOCAL	1	ADAMTSL3
TCGA.AA.A010.01A	15	85382993	85488326	26	0.8161	LARGE-GAIN	FOCAL	2	"ALPK3,SLC28A1"
TCGA.AA.A00Q.01A	15	85619075	85652236	8	0.7176	LARGE-GAIN	FOCAL	1	PDE8A
TCGA.AA.A010.01A	15	85679786	86201718	14	0.8331	LARGE-GAIN	FOCAL	2	"AKAP13,PDE8A"
TCGA.CI.6620	15	86124554	86128149	3	2.1793	LARGE-GAIN	FOCAL	1	AKAP13
TCGA.F5.6812	15	86124554	86128149	3	1.5455	LARGE-GAIN	FOCAL	1	AKAP13
TCGA.DC.6683	15	86126485	86128491	3	1.5549	LARGE-GAIN	FOCAL	1	AKAP13
TCGA.AA.A00L.01A	15	86261189	86279242	10	0.9372	LARGE-GAIN	FOCAL	1	AKAP13
TCGA.AG.A01W.01A	15	86996294	87204515	19	0.7527	LARGE-GAIN	FOCAL	1	AGBL1
TCGA.AG.A01W.01A	15	87969008	88011819	20	1.1076	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	15	88561649	88575138	11	0.7059	LARGE-GAIN	FOCAL	1	NTRK3
TCGA.AF.2689	15	89549525	89557986	3	1.2318	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	15	89659509	89761744	15	0.7926	LARGE-GAIN	FOCAL	2	"ABHD2,RLBP1"
TCGA.AA.A00A.01A	15	89762148	89858465	32	0.7605	LARGE-GAIN	FOCAL	2	"FANCI,RLBP1"
TCGA.DM.A28M.01A	15	89801870	89803892	2	1.5523	LARGE-GAIN	FOCAL	1	FANCI
TCGA.AG.3906.01A	15	89833387	89860578	18	0.7506	LARGE-GAIN	FOCAL	2	"FANCI,POLG"
TCGA.AA.A010.01A	15	90015927	90118778	11	0.7451	LARGE-GAIN	FOCAL	1	RHCG
TCGA.AG.3906.01A	15	90185394	90190776	6	1.0784	LARGE-GAIN	FOCAL	1	KIF7
TCGA.AA.A00Q.01A	15	90233758	90270371	9	0.7644	LARGE-GAIN	FOCAL	2	"PEX11A,WDR93"
TCGA.CK.5914.01A	15	90255209	90276187	9	0.6856	LARGE-GAIN	FOCAL	1	WDR93
TCGA.AA.A00Q.01A	15	91337356	91352315	5	1.0138	LARGE-GAIN	FOCAL	1	BLM
TCGA.AG.3906.01A	15	91419458	91456465	30	1.0049	LARGE-GAIN	FOCAL	3	"FES,FURIN,MAN2A2"
TCGA.AF.3914.01A	15	91447406	91448489	2	2.5988	LARGE-GAIN	FOCAL	1	MAN2A2
TCGA.AH.6643	15	91676559	91717144	21	1.3428	LARGE-GAIN	FOCAL	1	SV2B
TCGA.AH.6643	15	91717236	91812239	63	1.0522	LARGE-GAIN	FOCAL	1	SV2B
TCGA.AH.6643	15	91812452	92075813	96	1.4086	LARGE-GAIN	FOCAL	1	SV2B
TCGA.AA.A00L.01A	15	92973234	93563195	44	0.719	LARGE-GAIN	FOCAL	4	"C15orf32,CHD2,FAM174B,ST8SIA2"
TCGA.AA.3941	15	93245098	93460254	48	0.8237	LARGE-GAIN	FOCAL	1	CHD2
TCGA.AA.A00N.01A	15	94841536	95022138	23	0.8895	LARGE-GAIN	FOCAL	1	MCTP2
TCGA.D5.6538	15	96325134	97324573	391	1.1241	LARGE-GAIN	FOCAL	1	NR2F2
TCGA.AG.3891.01A	15	96869460	96880544	4	0.8387	LARGE-GAIN	FOCAL	1	NR2F2
TCGA.AG.3906.01A	15	96869460	96880544	4	1.298	LARGE-GAIN	FOCAL	1	NR2F2
TCGA.AG.A01W.01A	15	99410621	99426353	9	1.104	LARGE-GAIN	FOCAL	1	IGF1R
TCGA.AA.A00N.01A	15	100514575	100692778	13	1.2744	LARGE-GAIN	FOCAL	1	ADAMTS17
TCGA.AA.3509.01A	15	101013082	101030982	5	1.148	LARGE-GAIN	FOCAL	1	CERS3
TCGA.AA.A01Z	15	102203877	102400036	38	1.793	LARGE-GAIN	FOCAL	3	"OR4F15,OR4F6,TARSL2"
TCGA.AM.5820	16	572854	642609	5	1.6012	LARGE-GAIN	FOCAL	5	"CAPN15,NHLRC4,PIGQ,PRR35,RAB40C"
TCGA.AG.3605.01A	16	712638	776716	11	2.5946	LARGE-GAIN	FOCAL	10	"CCDC78,FAM173A,FBXL16,JMJD8,METRN,RHBDL1,RHOT2,STUB1,WDR24,WDR90"
TCGA.AM.5820	16	1045837	1161809	16	1.0643	LARGE-GAIN	FOCAL	2	"C1QTNF8,SSTR5"
TCGA.AM.5820	16	1179030	1273802	12	1.724	LARGE-GAIN	FOCAL	2	"CACNA1H,TPSG1"
TCGA.AM.5821	16	1179030	1394506	22	0.7221	LARGE-GAIN	FOCAL	7	"BAIAP3,CACNA1H,TPSAB1,TPSB2,TPSD1,TPSG1,UBE2I"
TCGA.AM.5820	16	1320592	1517727	22	0.9045	LARGE-GAIN	FOCAL	8	"BAIAP3,C16orf91,CCDC154,CLCN7,GNPTG,TSR3,UBE2I,UNKL"
TCGA.F5.6811.01A	16	1382860	1393170	7	1.0509	LARGE-GAIN	FOCAL	1	BAIAP3
TCGA.AM.5820	16	1546860	1593644	15	0.9106	LARGE-GAIN	FOCAL	3	"IFT140,TELO2,TMEM204"
TCGA.AA.A010.01A	16	1576603	1591872	3	0.7393	LARGE-GAIN	FOCAL	2	"IFT140,TMEM204"
TCGA.AG.3909.01A	16	1584265	1687770	21	0.8111	LARGE-GAIN	FOCAL	3	"CRAMP1L,IFT140,TMEM204"
TCGA.AA.A00L.01A	16	1607888	1637167	11	0.7891	LARGE-GAIN	FOCAL	1	IFT140
TCGA.AM.5820	16	1784141	1836254	6	1.3829	LARGE-GAIN	FOCAL	6	"EME2,MAPK8IP3,MRPS34,NME3,NUBP2,SPSB3"
TCGA.AA.A00L.01A	16	1889206	1902996	4	1.0917	LARGE-GAIN	FOCAL	2	"FAHD1,MEIOB"
TCGA.AA.3952	16	1920628	1920791	5	0.9229	LARGE-GAIN	FOCAL	1	MEIOB
TCGA.AG.3605.01A	16	2034736	2141740	9	2.0415	LARGE-GAIN	FOCAL	8	"GFER,NPW,NTHL1,PKD1,SLC9A3R2,SYNGR3,TSC2,ZNF598"
TCGA.AG.3605.01A	16	2142903	2284584	20	0.8982	LARGE-GAIN	FOCAL	8	"BRICD5,CASKIN1,E4F1,MLST8,PGP,PKD1,RAB26,TRAF7"
TCGA.AG.A01W.01A	16	2161494	2171168	8	1.1601	LARGE-GAIN	FOCAL	1	PKD1
TCGA.AG.A01W.01A	16	2198161	2229990	13	0.9575	LARGE-GAIN	FOCAL	3	"CASKIN1,RAB26,TRAF7"
TCGA.AG.3891.01A	16	2201524	2263766	19	0.8597	LARGE-GAIN	FOCAL	6	"BRICD5,CASKIN1,MLST8,PGP,RAB26,TRAF7"
TCGA.AA.A00L.01A	16	2342094	2376341	15	0.8045	LARGE-GAIN	FOCAL	1	ABCA3
TCGA.AM.5820	16	2711864	2827972	20	0.7398	LARGE-GAIN	FOCAL	4	"KCTD5,PRSS27,SRRM2,TCEB2"
TCGA.AA.A00A.01A	16	3558285	3586095	9	1.08	LARGE-GAIN	FOCAL	1	CLUAP1
TCGA.AA.A00L.01A	16	3558285	3586095	9	1.1274	LARGE-GAIN	FOCAL	1	CLUAP1
TCGA.AG.3909.01A	16	3795218	3900246	21	0.784	LARGE-GAIN	FOCAL	1	CREBBP
TCGA.AA.A00N.01A	16	3819153	3900246	14	0.6857	LARGE-GAIN	FOCAL	1	CREBBP
TCGA.AG.3909.01A	16	4384790	4410907	9	1.0528	LARGE-GAIN	FOCAL	4	"CORO7,CORO7-PAM16,GLIS2,PAM16"
TCGA.AA.A00L.01A	16	4458129	4557677	22	0.739	LARGE-GAIN	FOCAL	5	"CORO7,CORO7-PAM16,DNAJA3,HMOX2,NMRAL1"
TCGA.AA.A00N.01A	16	4555467	4606481	9	0.9118	LARGE-GAIN	FOCAL	2	"CDIP1,HMOX2"
TCGA.AG.3891.01A	16	4827760	4861124	11	0.8401	LARGE-GAIN	FOCAL	4	"GLYR1,ROGDI,SEPT12,SMIM22"
TCGA.AG.3909.01A	16	5083246	5110259	7	0.7241	LARGE-GAIN	FOCAL	2	"C16orf89,NAGPA"
TCGA.AZ.4681	16	5571777	5572639	6	0.7051	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3560	16	5667392	5839805	146	0.6806	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	16	6081911	6107553	20	0.8613	LARGE-GAIN	FOCAL	1	RBFOX1
TCGA.G4.6310	16	6306113	6306988	4	0.9002	LARGE-GAIN	FOCAL	1	RBFOX1
TCGA.CK.5912	16	6438774	6452266	13	1.1022	LARGE-GAIN	FOCAL	1	RBFOX1
TCGA.A6.6782	16	6512732	6516904	2	0.809	LARGE-GAIN	FOCAL	1	RBFOX1
TCGA.CM.5861	16	6621231	6622948	3	0.8527	LARGE-GAIN	FOCAL	1	RBFOX1
TCGA.A6.3808.01A	16	7101985	8719484	19	1.0195	LARGE-GAIN	FOCAL	3	"METTL22,RBFOX1,TMEM114"
TCGA.AD.6965	16	7149351	7151507	3	0.9772	LARGE-GAIN	FOCAL	1	RBFOX1
TCGA.AA.3850	16	7288607	7291027	4	0.83435	LARGE-GAIN	FOCAL	1	RBFOX1
TCGA.AA.3982	16	7803428	7814615	8	0.915	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	16	8598546	9280015	255	0.8132	LARGE-GAIN	FOCAL	8	"ABAT,C16orf72,CARHSP1,METTL22,PMM2,TMEM114,TMEM186,USP7"
TCGA.AA.A00L.01A	16	8895604	9014993	33	0.8003	LARGE-GAIN	FOCAL	3	"CARHSP1,PMM2,USP7"
TCGA.AA.A00A.01A	16	8895604	9017055	34	0.7172	LARGE-GAIN	FOCAL	3	"CARHSP1,PMM2,USP7"
TCGA.AA.3866	16	9693996	9703655	4	1.2901	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3872	16	9693996	9703655	4	1.5477	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	16	9857024	10031788	12	1.295	LARGE-GAIN	FOCAL	1	GRIN2A
TCGA.AA.A00N.01A	16	9857024	10837643	35	0.951	LARGE-GAIN	FOCAL	5	"ATF7IP2,EMP2,GRIN2A,NUBP1,TEKT5"
TCGA.AA.A010.01A	16	10273808	11038517	60	0.7163	LARGE-GAIN	FOCAL	9	"ATF7IP2,CIITA,CLEC16A,DEXI,EMP2,GRIN2A,NUBP1,TEKT5,TVP23A"
TCGA.AA.3941	16	10282130	10797412	241	0.804	LARGE-GAIN	FOCAL	3	"ATF7IP2,EMP2,TEKT5"
TCGA.G4.6314	16	10307480	10553671	90	1.4821	LARGE-GAIN	FOCAL	1	ATF7IP2
TCGA.AA.A00L.01A	16	10527335	10641344	13	0.9347	LARGE-GAIN	FOCAL	2	"ATF7IP2,EMP2"
TCGA.AA.3866	16	11015905	11068843	18	0.9785	LARGE-GAIN	FOCAL	3	"CIITA,CLEC16A,DEXI"
TCGA.AG.3909.01A	16	11056262	11794266	41	0.8167	LARGE-GAIN	FOCAL	10	"CLEC16A,LITAF,PRM1,PRM2,PRM3,RMI2,SNN,SOCS1,TNP2,TXNDC11"
TCGA.AA.A010.01A	16	11076688	11272224	18	0.8127	LARGE-GAIN	FOCAL	1	CLEC16A
TCGA.AA.A00A.01A	16	11643451	12096773	50	0.7439	LARGE-GAIN	FOCAL	8	"GSPT1,LITAF,RSL1D1,SNN,SNX29,TNFRSF17,TXNDC11,ZC3H7A"
TCGA.AA.A00N.01A	16	12096773	14013995	30	0.7536	LARGE-GAIN	FOCAL	3	"CPPED1,SHISA9,SNX29"
TCGA.AA.3866	16	12989951	13001682	4	1.1318	LARGE-GAIN	FOCAL	1	SHISA9
TCGA.AY.6197	16	13753348	13764679	10	0.8623	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	16	14038533	14346204	15	0.8299	LARGE-GAIN	FOCAL	2	"ERCC4,MKL2"
TCGA.AA.3509.01A	16	14234416	14310963	4	0.8956	LARGE-GAIN	FOCAL	1	MKL2
TCGA.AG.A016.01A	16	14339368	14748874	34	0.6953	LARGE-GAIN	FOCAL	3	"BFAR,MKL2,PARN"
TCGA.AA.3862.01A	16	14742223	15100224	37	1.761	LARGE-GAIN	FOCAL	7	"BFAR,NOMO1,NPIPA1,NPIPA2,NPIPA3,PDXDC1,PLA2G10"
TCGA.AA.3861.01A	16	14947277	15100224	28	2.004	LARGE-GAIN	FOCAL	3	"NOMO1,NPIPA1,PDXDC1"
TCGA.CK.5914.01A	16	14958412	14968842	7	1.0508	LARGE-GAIN	FOCAL	1	NOMO1
TCGA.CK.5914.01A	16	14970168	14976391	6	1.8652	LARGE-GAIN	FOCAL	1	NOMO1
TCGA.G4.6314	16	14975291	15186079	14	1.4199	LARGE-GAIN	FOCAL	5	"NOMO1,NPIPA1,NTAN1,PDXDC1,RRN3"
TCGA.CK.5914.01A	16	14978187	14989330	5	1.0613	LARGE-GAIN	FOCAL	1	NOMO1
TCGA.AA.3861.01A	16	15141653	15187950	17	1.8712	LARGE-GAIN	FOCAL	3	"NTAN1,PDXDC1,RRN3"
TCGA.AA.3862.01A	16	15141653	15501667	20	1.989	LARGE-GAIN	FOCAL	5	"MPV17L,NPIPA5,NTAN1,PDXDC1,RRN3"
TCGA.AA.A010.01A	16	15187950	15711159	24	0.7614	LARGE-GAIN	FOCAL	6	"C16orf45,KIAA0430,MPV17L,NPIPA5,PDXDC1,RRN3"
TCGA.AA.A00N.01A	16	15771609	15931713	43	0.9464	LARGE-GAIN	FOCAL	2	"MYH11,NDE1"
TCGA.AG.3909.01A	16	15771609	15931713	43	1.1169	LARGE-GAIN	FOCAL	2	"MYH11,NDE1"
TCGA.A6.3808.01A	16	15808716	15813024	4	4.0074	LARGE-GAIN	FOCAL	2	"MYH11,NDE1"
TCGA.AA.A010.01A	16	15808716	15851642	24	1.1961	LARGE-GAIN	FOCAL	2	"MYH11,NDE1"
TCGA.A6.3808.01A	16	15813402	16253311	72	0.869	LARGE-GAIN	FOCAL	5	"ABCC1,ABCC6,FOPNL,MYH11,NDE1"
TCGA.AA.A00D.01A	16	15961239	15977855	4	1.0342	LARGE-GAIN	FOCAL	1	FOPNL
TCGA.AA.A010.01A	16	15982342	16297260	54	0.9009	LARGE-GAIN	FOCAL	3	"ABCC1,ABCC6,FOPNL"
TCGA.AG.3909.01A	16	15982342	16305976	54	1.2033	LARGE-GAIN	FOCAL	3	"ABCC1,ABCC6,FOPNL"
TCGA.AA.A00N.01A	16	16126900	16184212	14	1.0744	LARGE-GAIN	FOCAL	1	ABCC1
TCGA.CK.5914.01A	16	16126900	16184212	14	1.3828	LARGE-GAIN	FOCAL	1	ABCC1
TCGA.AA.A00N.01A	16	16215781	16302555	32	1.1599	LARGE-GAIN	FOCAL	2	"ABCC1,ABCC6"
TCGA.CK.5914.01A	16	16269724	16308134	16	1.0677	LARGE-GAIN	FOCAL	1	ABCC6
TCGA.AA.3861.01A	16	16291831	16367649	15	1.6351	LARGE-GAIN	FOCAL	2	"ABCC6,NOMO3"
TCGA.AA.3862.01A	16	16291831	16367649	17	2.0876	LARGE-GAIN	FOCAL	2	"ABCC6,NOMO3"
TCGA.AG.3909.01A	16	16338887	18560795	34	1.0487	LARGE-GAIN	FOCAL	5	"NOMO2,NOMO3,NPIPA7,NPIPA8,XYLT1"
TCGA.CK.5914.01A	16	16349528	16360848	7	0.7972	LARGE-GAIN	FOCAL	1	NOMO3
TCGA.CK.5914.01A	16	16363908	18531903	14	1.3605	LARGE-GAIN	FOCAL	5	"NOMO2,NOMO3,NPIPA7,NPIPA8,XYLT1"
TCGA.AA.A00N.01A	16	17202565	18531903	12	1.4664	LARGE-GAIN	FOCAL	4	"NOMO2,NPIPA7,NPIPA8,XYLT1"
TCGA.AA.A00Q.01A	16	17451787	18542759	13	1.2502	LARGE-GAIN	FOCAL	4	"NOMO2,NPIPA7,NPIPA8,XYLT1"
TCGA.CK.5914.01A	16	18538804	18560795	10	0.7083	LARGE-GAIN	FOCAL	1	NOMO2
TCGA.AA.A00Q.01A	16	18544279	18568977	6	0.882	LARGE-GAIN	FOCAL	1	NOMO2
TCGA.T9.A92H	16	18606396	18821190	9	0.9175	LARGE-GAIN	FOCAL	3	"ARL6IP1,RPS15A,SMG1"
TCGA.AA.3518	16	18748575	18783173	4	1.6233	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	16	18796004	18809985	7	0.8325	LARGE-GAIN	FOCAL	2	"ARL6IP1,RPS15A"
TCGA.AG.3909.01A	16	18812669	19078925	59	0.7223	LARGE-GAIN	FOCAL	4	"ARL6IP1,COQ7,SMG1,TMC7"
TCGA.AA.A00N.01A	16	18830794	18865940	22	0.8917	LARGE-GAIN	FOCAL	1	SMG1
TCGA.AA.3861.01A	16	18870940	19020457	13	2.2887	LARGE-GAIN	FOCAL	2	"SMG1,TMC7"
TCGA.AA.3862.01A	16	18870940	19020457	14	2.4985	LARGE-GAIN	FOCAL	2	"SMG1,TMC7"
TCGA.AA.3941	16	18922350	19209718	74	0.8413	LARGE-GAIN	FOCAL	5	"COQ7,ITPRIPL2,SMG1,SYT17,TMC7"
TCGA.AA.A00K.01A	16	19067817	19553172	51	0.7655	LARGE-GAIN	FOCAL	8	"CCP110,CLEC19A,COQ7,GDE1,ITPRIPL2,SYT17,TMC5,TMC7"
TCGA.AA.A00D.01A	16	19073032	19089353	6	1.0762	LARGE-GAIN	FOCAL	2	"COQ7,TMC7"
TCGA.AA.3941	16	19247796	20154945	298	0.778	LARGE-GAIN	FOCAL	10	"C16orf62,CCP110,CLEC19A,GDE1,GPR139,GPRC5B,IQCK,KNOP1,SYT17,TMC5"
TCGA.CK.5914.01A	16	19278164	19460817	9	1.3012	LARGE-GAIN	FOCAL	3	"CLEC19A,SYT17,TMC5"
TCGA.AA.A00N.01A	16	19278164	19501690	23	0.927	LARGE-GAIN	FOCAL	3	"CLEC19A,SYT17,TMC5"
TCGA.AG.3909.01A	16	19278164	19501690	19	1.2046	LARGE-GAIN	FOCAL	3	"CLEC19A,SYT17,TMC5"
TCGA.AG.3909.01A	16	19503415	19516162	6	0.6864	LARGE-GAIN	FOCAL	2	"GDE1,TMC5"
TCGA.AA.A00L.01A	16	19508363	19661661	47	0.8043	LARGE-GAIN	FOCAL	4	"C16orf62,CCP110,GDE1,TMC5"
TCGA.AA.A00D.01A	16	19514755	19592800	27	0.8089	LARGE-GAIN	FOCAL	3	"C16orf62,CCP110,GDE1"
TCGA.AG.3909.01A	16	19566959	19710775	30	0.9818	LARGE-GAIN	FOCAL	1	C16orf62
TCGA.AG.3909.01A	16	19729591	19883490	12	0.7237	LARGE-GAIN	FOCAL	2	"GPRC5B,IQCK"
TCGA.AA.A017.01A	16	19883086	20337607	13	0.9606	LARGE-GAIN	FOCAL	3	"GP2,GPR139,GPRC5B"
TCGA.CK.5914.01A	16	20043006	20344570	14	1.2627	LARGE-GAIN	FOCAL	3	"GP2,GPR139,UMOD"
TCGA.AG.3909.01A	16	20043006	20346733	14	1.1099	LARGE-GAIN	FOCAL	3	"GP2,GPR139,UMOD"
TCGA.AG.3909.01A	16	20380776	20395960	5	0.7697	LARGE-GAIN	FOCAL	1	PDILT
TCGA.AA.A01Q.01A	16	20410373	20432561	5	0.8667	LARGE-GAIN	FOCAL	2	"ACSM5,PDILT"
TCGA.AG.3909.01A	16	20410373	20448352	11	1.3008	LARGE-GAIN	FOCAL	2	"ACSM5,PDILT"
TCGA.AA.A00N.01A	16	20410373	20476797	15	1.3092	LARGE-GAIN	FOCAL	3	"ACSM2A,ACSM5,PDILT"
TCGA.CK.5914.01A	16	20410373	20476797	15	1.5221	LARGE-GAIN	FOCAL	3	"ACSM2A,ACSM5,PDILT"
TCGA.AG.3909.01A	16	20451073	20486644	8	0.8549	LARGE-GAIN	FOCAL	2	"ACSM2A,ACSM5"
TCGA.CK.5914.01A	16	20559333	20696463	19	1.0904	LARGE-GAIN	FOCAL	2	"ACSM1,ACSM2B"
TCGA.AG.3909.01A	16	20559333	20702268	20	1.0361	LARGE-GAIN	FOCAL	2	"ACSM1,ACSM2B"
TCGA.AA.A00N.01A	16	20565067	20796278	27	0.7028	LARGE-GAIN	FOCAL	5	"ACSM1,ACSM2B,ACSM3,ERI2,THUMPD1"
TCGA.AA.A00D.01A	16	20796278	20844318	27	0.757	LARGE-GAIN	FOCAL	3	"ACSM3,ERI2,LOC81691"
TCGA.AZ.4684.01A	16	20807644	20811575	6	1.6702	LARGE-GAIN	FOCAL	2	"ACSM3,ERI2"
TCGA.AA.3509.01A	16	20808155	20811575	5	1.7271	LARGE-GAIN	FOCAL	2	"ACSM3,ERI2"
TCGA.AA.A00N.01A	16	20817673	20981062	37	0.7022	LARGE-GAIN	FOCAL	5	"DCUN1D3,DNAH3,ERI2,LOC81691,LYRM1"
TCGA.AG.3909.01A	16	20835714	20986508	32	0.9902	LARGE-GAIN	FOCAL	4	"DCUN1D3,DNAH3,LOC81691,LYRM1"
TCGA.CK.5914.01A	16	20837118	20990603	32	0.8483	LARGE-GAIN	FOCAL	4	"DCUN1D3,DNAH3,LOC81691,LYRM1"
TCGA.AA.A00D.01A	16	20990603	21033256	10	0.7118	LARGE-GAIN	FOCAL	1	DNAH3
TCGA.AA.A00N.01A	16	21030948	21136475	33	0.7617	LARGE-GAIN	FOCAL	1	DNAH3
TCGA.AG.3909.01A	16	21030948	21138958	34	1.0799	LARGE-GAIN	FOCAL	1	DNAH3
TCGA.AG.3909.01A	16	21190735	21278845	19	0.966	LARGE-GAIN	FOCAL	4	"ANKS4B,CRYM,TMEM159,ZP2"
TCGA.AA.A017.01A	16	21210055	21261040	13	0.774	LARGE-GAIN	FOCAL	2	"ANKS4B,ZP2"
TCGA.AA.A00D.01A	16	21289364	21689785	12	0.8411	LARGE-GAIN	FOCAL	4	"CRYM,IGSF6,METTL9,NPIPB3"
TCGA.CK.5914.01A	16	21689785	22151423	63	0.9207	LARGE-GAIN	FOCAL	5	"C16orf52,OTOA,PDZD9,UQCRC2,VWA3A"
TCGA.AG.3909.01A	16	21689785	22291479	79	1.0376	LARGE-GAIN	FOCAL	6	"C16orf52,EEF2K,OTOA,PDZD9,UQCRC2,VWA3A"
TCGA.AG.A01W.01A	16	21927089	21999471	3	0.8363	LARGE-GAIN	FOCAL	2	"PDZD9,UQCRC2"
TCGA.AA.A010.01A	16	22128049	22145647	12	0.756	LARGE-GAIN	FOCAL	1	VWA3A
TCGA.AA.A010.01A	16	22237019	22337085	32	0.9503	LARGE-GAIN	FOCAL	2	"EEF2K,POLR3E"
TCGA.AA.A00N.01A	16	22255911	22291479	15	1.3311	LARGE-GAIN	FOCAL	1	EEF2K
TCGA.AA.A010.01A	16	22385490	23093732	9	0.8378	LARGE-GAIN	FOCAL	4	"CDR2,HS3ST2,NPIPB5,USP31"
TCGA.AA.3527	16	22421320	22631398	5	1.5647	LARGE-GAIN	FOCAL	1	NPIPB5
TCGA.AG.3726	16	22421320	22704519	10	0.8927	LARGE-GAIN	FOCAL	1	NPIPB5
TCGA.AG.3909.01A	16	22546110	23119316	18	0.8559	LARGE-GAIN	FOCAL	3	"HS3ST2,NPIPB5,USP31"
TCGA.AG.3909.01A	16	23221034	23366572	9	1.6037	LARGE-GAIN	FOCAL	2	"SCNN1B,SCNN1G"
TCGA.AA.A010.01A	16	23359919	23464100	28	0.7577	LARGE-GAIN	FOCAL	2	"COG7,SCNN1B"
TCGA.AA.A00D.01A	16	23409307	23424727	5	0.9028	LARGE-GAIN	FOCAL	1	COG7
TCGA.AG.3909.01A	16	23436038	23555815	29	0.943	LARGE-GAIN	FOCAL	3	"COG7,EARS2,GGA2"
TCGA.AA.A00L.01A	16	23497975	23672443	26	0.8416	LARGE-GAIN	FOCAL	6	"DCTN5,EARS2,GGA2,NDUFAB1,PALB2,UBFD1"
TCGA.AA.A02W.01A	16	23569272	23573898	4	3.3381	LARGE-GAIN	FOCAL	1	UBFD1
TCGA.AG.A00C.01A	16	23578251	23598470	5	0.8167	LARGE-GAIN	FOCAL	2	"NDUFAB1,UBFD1"
TCGA.AA.A010.01A	16	23640992	23768780	37	0.8151	LARGE-GAIN	FOCAL	5	"CHP2,DCTN5,ERN2,PALB2,PLK1"
TCGA.CK.5914.01A	16	23724378	24372631	28	0.7206	LARGE-GAIN	FOCAL	4	"CACNG3,CHP2,ERN2,PRKCB"
TCGA.AG.3909.01A	16	23848621	24372631	21	1.0629	LARGE-GAIN	FOCAL	2	"CACNG3,PRKCB"
TCGA.AA.A00N.01A	16	24165997	24372631	13	1.0333	LARGE-GAIN	FOCAL	2	"CACNG3,PRKCB"
TCGA.AA.A00D.01A	16	24551896	24815460	23	0.7966	LARGE-GAIN	FOCAL	2	"RBBP6,TNRC6A"
TCGA.AA.3952	16	24555627	24700485	22	1.7221	LARGE-GAIN	FOCAL	1	RBBP6
TCGA.AA.3952	16	24704417	24711318	4	2.4798	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3952	16	24711963	26239083	551	1.9923	LARGE-GAIN	FOCAL	7	"AQP8,ARHGAP17,HS3ST4,LCMT1,SLC5A11,TNRC6A,ZKSCAN2"
TCGA.AG.3909.01A	16	24761994	24828090	18	0.7485	LARGE-GAIN	FOCAL	1	TNRC6A
TCGA.CK.5914.01A	16	24761994	25239693	73	0.8177	LARGE-GAIN	FOCAL	5	"AQP8,ARHGAP17,LCMT1,SLC5A11,TNRC6A"
TCGA.AA.A00N.01A	16	24788215	25239693	72	0.8893	LARGE-GAIN	FOCAL	5	"AQP8,ARHGAP17,LCMT1,SLC5A11,TNRC6A"
TCGA.AG.3909.01A	16	24829885	24950688	24	1.279	LARGE-GAIN	FOCAL	3	"ARHGAP17,SLC5A11,TNRC6A"
TCGA.AG.3909.01A	16	24964205	25123157	10	1.0002	LARGE-GAIN	FOCAL	2	"ARHGAP17,LCMT1"
TCGA.AG.3909.01A	16	25172375	25239693	12	1.2766	LARGE-GAIN	FOCAL	2	"AQP8,LCMT1"
TCGA.AG.3909.01A	16	27268735	27459814	18	1.2161	LARGE-GAIN	FOCAL	3	"IL21R,IL4R,NSMCE1"
TCGA.AG.3909.01A	16	27497269	27772714	39	0.9426	LARGE-GAIN	FOCAL	2	"GTF3C1,KIAA0556"
TCGA.AG.3891.01A	16	28330296	28331349	2	1.4247	LARGE-GAIN	FOCAL	1	SBK1
TCGA.AA.A010.01A	16	28481729	28550069	20	0.9259	LARGE-GAIN	FOCAL	4	"APOBR,CLN3,IL27,NUPR1"
TCGA.AA.A00D.01A	16	28602863	28845338	23	0.7223	LARGE-GAIN	FOCAL	7	"ATXN2L,CCDC101,EIF3C,EIF3CL,NPIPB9,SULT1A1,SULT1A2"
TCGA.AA.A010.01A	16	29690429	29755560	4	1.6717	LARGE-GAIN	FOCAL	2	"C16orf54,QPRT"
TCGA.AG.A01W.01A	16	29722225	29727343	5	1.0523	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	16	29818011	29871846	21	0.7519	LARGE-GAIN	FOCAL	5	"CDIPT,MAZ,MVP,PAGR1,PRRT2"
TCGA.AA.A00L.01A	16	29845007	29883460	16	0.8113	LARGE-GAIN	FOCAL	3	"CDIPT,MVP,SEZ6L2"
TCGA.A6.3808.01A	16	29882945	29994787	34	1.2336	LARGE-GAIN	FOCAL	5	"ASPHD1,KCTD13,SEZ6L2,TAOK2,TMEM219"
TCGA.AY.A8YK	16	30000900	30018499	3	1.9105	LARGE-GAIN	FOCAL	4	"DOC2A,HIRIP3,INO80E,TAOK2"
TCGA.AG.3906.01A	16	30387100	30393387	11	1.1931	LARGE-GAIN	FOCAL	3	"MYLPF,SEPT1,ZNF48"
TCGA.AG.3909.01A	16	30495106	30531126	16	0.9145	LARGE-GAIN	FOCAL	1	ITGAL
TCGA.CK.5914.01A	16	30500368	30510345	5	1.1852	LARGE-GAIN	FOCAL	1	ITGAL
TCGA.AA.A010.01A	16	30566516	30621110	13	0.7482	LARGE-GAIN	FOCAL	4	"ZNF688,ZNF689,ZNF764,ZNF785"
TCGA.AG.3906.01A	16	30677746	30680391	3	0.9825	LARGE-GAIN	FOCAL	1	FBRS
TCGA.AA.A00L.01A	16	30718846	30731432	9	0.7116	LARGE-GAIN	FOCAL	1	SRCAP
TCGA.AG.3909.01A	16	30731987	30740644	10	0.7788	LARGE-GAIN	FOCAL	1	SRCAP
TCGA.A6.6650	16	30780827	30982224	21	1.1218	LARGE-GAIN	FOCAL	7	"BCL7C,CTF1,FBXL19,ORAI3,RNF40,SETD1A,ZNF629"
TCGA.A6.3808.01A	16	30785207	30958043	20	1.1271	LARGE-GAIN	FOCAL	5	"BCL7C,CTF1,FBXL19,RNF40,ZNF629"
TCGA.AG.3891.01A	16	30899168	31012816	36	0.8701	LARGE-GAIN	FOCAL	7	"BCL7C,CTF1,FBXL19,HSD3B7,ORAI3,SETD1A,STX1B"
TCGA.AG.3906.01A	16	30899168	31012816	33	1.449	LARGE-GAIN	FOCAL	7	"BCL7C,CTF1,FBXL19,HSD3B7,ORAI3,SETD1A,STX1B"
TCGA.AG.A008.01A	16	31045784	31046228	2	1.2412	LARGE-GAIN	FOCAL	1	STX4
TCGA.AG.3906.01A	16	31104596	31131487	8	0.9859	LARGE-GAIN	FOCAL	3	"BCKDK,KAT8,VKORC1"
TCGA.AA.A02K.01A	16	31160701	31228032	18	0.6931	LARGE-GAIN	FOCAL	5	"FUS,PRSS36,PYCARD,PYDC1,TRIM72"
TCGA.CK.5914.01A	16	31235490	31335693	14	0.9044	LARGE-GAIN	FOCAL	2	"ITGAM,TRIM72"
TCGA.A6.3808.01A	16	31235490	31342896	24	1.3746	LARGE-GAIN	FOCAL	2	"ITGAM,TRIM72"
TCGA.AG.3909.01A	16	31271298	31308784	11	1.1003	LARGE-GAIN	FOCAL	1	ITGAM
TCGA.AA.A00N.01A	16	31271298	31366514	24	1.1426	LARGE-GAIN	FOCAL	2	"ITGAM,ITGAX"
TCGA.CK.5914.01A	16	31419712	31424107	5	0.8587	LARGE-GAIN	FOCAL	1	ITGAD
TCGA.AG.3891.01A	16	31434396	31447675	5	0.7284	LARGE-GAIN	FOCAL	3	"COX6A2,ITGAD,ZNF843"
TCGA.AA.3861.01A	16	31925767	46722948	31	1.0194	LARGE-GAIN	FOCAL	7	"SHCBP1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267"
TCGA.DM.A1D6	16	32483005	33940199	4	0.8462	LARGE-GAIN	FOCAL	3	"TP53TG3,TP53TG3B,TP53TG3C"
TCGA.F5.6811.01A	16	33554699	33872951	2	1.0769	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	16	46714552	46715943	3	1.6124	LARGE-GAIN	FOCAL	1	VPS35
TCGA.AA.A010.01A	16	46754971	46781621	9	1.008	LARGE-GAIN	FOCAL	1	MYLK3
TCGA.AA.A00D.01A	16	47162218	47196402	7	1.1554	LARGE-GAIN	FOCAL	2	"ITFG1,NETO2"
TCGA.AG.3909.01A	16	48117578	48124977	6	0.9027	LARGE-GAIN	FOCAL	1	ABCC12
TCGA.CK.5914.01A	16	48119466	48247326	44	0.9403	LARGE-GAIN	FOCAL	2	"ABCC11,ABCC12"
TCGA.AG.3909.01A	16	48130620	48248751	40	1.3123	LARGE-GAIN	FOCAL	2	"ABCC11,ABCC12"
TCGA.AA.A010.01A	16	48134742	48290470	49	0.7197	LARGE-GAIN	FOCAL	3	"ABCC11,ABCC12,LONP2"
TCGA.AA.A00N.01A	16	48175083	48248751	23	1.2162	LARGE-GAIN	FOCAL	2	"ABCC11,ABCC12"
TCGA.D5.6539	16	48277849	48589061	50	0.9399	LARGE-GAIN	FOCAL	3	"LONP2,N4BP1,SIAH1"
TCGA.AG.A00C.01A	16	48395524	48399256	4	0.8102	LARGE-GAIN	FOCAL	1	SIAH1
TCGA.AG.3909.01A	16	49407813	49432995	5	1.2135	LARGE-GAIN	FOCAL	1	C16orf78
TCGA.CK.5914.01A	16	49407813	49432995	5	1.5508	LARGE-GAIN	FOCAL	1	C16orf78
TCGA.AA.A00D.01A	16	49856497	50258541	14	0.7341	LARGE-GAIN	FOCAL	4	"CNEP1R1,HEATR3,PAPD5,ZNF423"
TCGA.AG.3909.01A	16	50120094	50261713	13	0.7637	LARGE-GAIN	FOCAL	2	"HEATR3,PAPD5"
TCGA.AA.A010.01A	16	50322051	50348161	23	0.7044	LARGE-GAIN	FOCAL	1	ADCY7
TCGA.G4.6310	16	50641987	50649285	5	1.0412	LARGE-GAIN	FOCAL	1	NKD1
TCGA.CK.5914.01A	16	50810039	50830206	13	1.227	LARGE-GAIN	FOCAL	1	CYLD
TCGA.AG.3909.01A	16	50810039	53357885	59	0.7465	LARGE-GAIN	FOCAL	5	"C16orf97,CHD9,CYLD,SALL1,TOX3"
TCGA.A6.2678	16	51083979	51449542	137	1.0522	LARGE-GAIN	FOCAL	1	SALL1
TCGA.A6.2678	16	51903469	51984145	35	1.1425	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3726	16	51943376	53596365	577	0.7196	LARGE-GAIN	FOCAL	6	"AKTIP,C16orf97,CHD9,LOC643802,RBL2,TOX3"
TCGA.A6.2678	16	51992614	53083565	456	0.6918	LARGE-GAIN	FOCAL	2	"C16orf97,TOX3"
TCGA.T9.A92H	16	52353296	53429774	359	0.8811	LARGE-GAIN	FOCAL	3	"CHD9,LOC643802,TOX3"
TCGA.AA.A00N.01A	16	52473095	52497799	5	1.7669	LARGE-GAIN	FOCAL	1	TOX3
TCGA.CK.5914.01A	16	52473095	53357885	44	0.9771	LARGE-GAIN	FOCAL	2	"CHD9,TOX3"
TCGA.AA.A00N.01A	16	52502357	53468467	41	0.8063	LARGE-GAIN	FOCAL	4	"CHD9,LOC643802,RBL2,TOX3"
TCGA.AA.3509.01A	16	53692263	53721727	8	1.0489	LARGE-GAIN	FOCAL	1	RPGRIP1L
TCGA.AA.A00N.01A	16	53738018	53967850	8	0.7033	LARGE-GAIN	FOCAL	1	FTO
TCGA.QL.A97D	16	54268300	54276242	3	1.4473	LARGE-GAIN	FOCAL	0	None
TCGA.CM.6170	16	55380829	55396354	4	1.3921	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	16	55543074	55568296	7	0.8473	LARGE-GAIN	FOCAL	1	LPCAT2
TCGA.CK.5914.01A	16	55543074	55908996	53	1.4349	LARGE-GAIN	FOCAL	5	"CAPNS2,CES1,CES5A,LPCAT2,SLC6A2"
TCGA.AA.A00N.01A	16	55579607	55730089	16	0.7004	LARGE-GAIN	FOCAL	3	"CAPNS2,LPCAT2,SLC6A2"
TCGA.AG.3909.01A	16	55583147	55705803	10	0.8284	LARGE-GAIN	FOCAL	3	"CAPNS2,LPCAT2,SLC6A2"
TCGA.AG.3909.01A	16	55719018	55736149	11	1.628	LARGE-GAIN	FOCAL	1	SLC6A2
TCGA.AA.A00N.01A	16	55731758	55736149	6	1.6212	LARGE-GAIN	FOCAL	1	SLC6A2
TCGA.AG.3909.01A	16	55844382	55908996	23	1.1629	LARGE-GAIN	FOCAL	2	"CES1,CES5A"
TCGA.AA.A00N.01A	16	55854237	55908996	18	1.1757	LARGE-GAIN	FOCAL	2	"CES1,CES5A"
TCGA.CK.5914.01A	16	56396772	56441876	11	0.749	LARGE-GAIN	FOCAL	1	AMFR
TCGA.AA.A00Q.01A	16	56403078	56548315	45	0.7248	LARGE-GAIN	FOCAL	4	"AMFR,BBS2,NUDT21,OGFOD1"
TCGA.AA.A00D.01A	16	56436850	56468196	8	0.9524	LARGE-GAIN	FOCAL	2	"AMFR,NUDT21"
TCGA.AG.3909.01A	16	56484968	56519465	16	0.918	LARGE-GAIN	FOCAL	3	"BBS2,NUDT21,OGFOD1"
TCGA.AG.3909.01A	16	56782129	56912934	31	1.0792	LARGE-GAIN	FOCAL	2	"NUP93,SLC12A3"
TCGA.CK.5914.01A	16	56792402	56875590	18	1.0534	LARGE-GAIN	FOCAL	1	NUP93
TCGA.AA.A00N.01A	16	56832333	56878384	18	0.6875	LARGE-GAIN	FOCAL	1	NUP93
TCGA.CK.5914.01A	16	56878384	56902150	5	1.8019	LARGE-GAIN	FOCAL	2	"NUP93,SLC12A3"
TCGA.AA.A00N.01A	16	56892374	56913427	12	1.1522	LARGE-GAIN	FOCAL	1	SLC12A3
TCGA.AA.A010.01A	16	56892374	57081399	68	0.8317	LARGE-GAIN	FOCAL	4	"CETP,HERPUD1,NLRC5,SLC12A3"
TCGA.AF.A56L	16	56901287	56944726	20	0.6876	LARGE-GAIN	FOCAL	1	SLC12A3
TCGA.CK.5914.01A	16	56903592	56966150	24	0.8497	LARGE-GAIN	FOCAL	2	"HERPUD1,SLC12A3"
TCGA.CK.5914.01A	16	56976991	57054654	16	0.9514	LARGE-GAIN	FOCAL	3	"CETP,HERPUD1,NLRC5"
TCGA.AA.A00N.01A	16	56995840	57007233	8	0.8269	LARGE-GAIN	FOCAL	1	CETP
TCGA.AG.3909.01A	16	56995840	57008937	9	1.1852	LARGE-GAIN	FOCAL	1	CETP
TCGA.CK.5914.01A	16	57056106	57081399	19	1.7509	LARGE-GAIN	FOCAL	1	NLRC5
TCGA.AG.3909.01A	16	57056106	57100397	29	1.5399	LARGE-GAIN	FOCAL	1	NLRC5
TCGA.AA.A00N.01A	16	57056106	57101242	30	1.1176	LARGE-GAIN	FOCAL	1	NLRC5
TCGA.CK.5914.01A	16	57085395	57188173	39	0.9658	LARGE-GAIN	FOCAL	3	"CPNE2,FAM192A,NLRC5"
TCGA.AG.3909.01A	16	57101242	57188173	27	0.8099	LARGE-GAIN	FOCAL	3	"CPNE2,FAM192A,NLRC5"
TCGA.AA.A010.01A	16	57168626	57197846	6	0.805	LARGE-GAIN	FOCAL	2	"CPNE2,FAM192A"
TCGA.AA.A00Q.01A	16	57238592	57265042	12	0.908	LARGE-GAIN	FOCAL	1	RSPRY1
TCGA.AA.A00D.01A	16	57238592	57295781	22	0.7615	LARGE-GAIN	FOCAL	3	"ARL2BP,PLLP,RSPRY1"
TCGA.AA.A00N.01A	16	57290787	57463031	14	0.7822	LARGE-GAIN	FOCAL	5	"CCL17,CCL22,CIAPIN1,CX3CL1,PLLP"
TCGA.AG.3909.01A	16	57392665	57447793	7	1.1399	LARGE-GAIN	FOCAL	3	"CCL17,CCL22,CX3CL1"
TCGA.AA.3861.01A	16	57466349	57470515	3	2.3101	LARGE-GAIN	FOCAL	1	CIAPIN1
TCGA.AG.3891.01A	16	57551953	57559761	4	0.8629	LARGE-GAIN	FOCAL	1	CCDC102A
TCGA.AA.A00Q.01A	16	57707186	57771089	25	0.6904	LARGE-GAIN	FOCAL	3	"ADGRG3,DRC7,KATNB1"
TCGA.CK.5914.01A	16	57712034	57741320	13	1.2399	LARGE-GAIN	FOCAL	2	"ADGRG3,DRC7"
TCGA.AG.3909.01A	16	57717797	57764805	18	1.0073	LARGE-GAIN	FOCAL	2	"ADGRG3,DRC7"
TCGA.AA.A00N.01A	16	57931649	58000980	27	0.985	LARGE-GAIN	FOCAL	1	CNGB1
TCGA.AG.3909.01A	16	57937679	58000980	23	1.2833	LARGE-GAIN	FOCAL	1	CNGB1
TCGA.CK.5914.01A	16	57945627	58000980	23	1.0355	LARGE-GAIN	FOCAL	1	CNGB1
TCGA.AG.3909.01A	16	58162881	58220622	10	0.7487	LARGE-GAIN	FOCAL	2	"CFAP20,CSNK2A2"
TCGA.AA.A010.01A	16	58283872	58327580	14	0.7456	LARGE-GAIN	FOCAL	2	"CCDC113,PRSS54"
TCGA.AA.A00L.01A	16	58286589	58313582	8	0.9281	LARGE-GAIN	FOCAL	1	CCDC113
TCGA.AG.3906.01A	16	58426458	58559875	19	0.9671	LARGE-GAIN	FOCAL	4	"CNOT1,GINS3,NDRG4,SETD6"
TCGA.AA.A00Q.01A	16	58552266	58701262	45	0.9147	LARGE-GAIN	FOCAL	3	"CNOT1,SETD6,SLC38A7"
TCGA.CK.5914.01A	16	58565815	58633098	36	0.9452	LARGE-GAIN	FOCAL	1	CNOT1
TCGA.AA.A010.01A	16	58633098	58713759	11	1.1447	LARGE-GAIN	FOCAL	2	"CNOT1,SLC38A7"
TCGA.AA.3811	16	59331285	59333073	4	1.3114	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	16	61687464	66413191	24	0.8981	LARGE-GAIN	FOCAL	3	"CDH11,CDH5,CDH8"
TCGA.DM.A28M.01A	16	61747693	61760960	2	1.8845	LARGE-GAIN	FOCAL	1	CDH8
TCGA.AA.3509.01A	16	61747693	65005785	14	0.7752	LARGE-GAIN	FOCAL	2	"CDH11,CDH8"
TCGA.AZ.4681	16	62631192	62632272	4	1.2	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3667	16	63701634	63714341	3	1.0138	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	64978177	65068952	11	0.8676	LARGE-GAIN	FOCAL	1	CDH11
TCGA.AG.A01W.01A	16	65199686	65201241	3	1.2143	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	65770803	65798959	20	0.9347	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3866	16	65928696	65928888	4	0.7988	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	66236899	66256354	18	1.0267	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	16	66942258	66943842	3	1.2336	LARGE-GAIN	FOCAL	1	CDH16
TCGA.AG.A016.01A	16	67313900	67333219	21	0.8756	LARGE-GAIN	FOCAL	2	"KCTD19,PLEKHG4"
TCGA.AA.A010.01A	16	67514819	67517125	4	0.8867	LARGE-GAIN	FOCAL	2	"AGRP,ATP6V0D1"
TCGA.AG.3909.01A	16	67644696	67686134	20	0.9574	LARGE-GAIN	FOCAL	2	"CTCF,RLTPR"
TCGA.AG.A015.01A	16	67679391	67698868	19	1.0273	LARGE-GAIN	FOCAL	4	"ACD,ENKD1,PARD6A,RLTPR"
TCGA.AG.A016.01A	16	67679391	67701730	21	0.9173	LARGE-GAIN	FOCAL	5	"ACD,C16orf86,ENKD1,PARD6A,RLTPR"
TCGA.AG.3891.01A	16	67681397	67693120	12	1.0756	LARGE-GAIN	FOCAL	2	"ACD,RLTPR"
TCGA.AG.3906.01A	16	67685058	67698868	11	1.4862	LARGE-GAIN	FOCAL	4	"ACD,ENKD1,PARD6A,RLTPR"
TCGA.AG.3909.01A	16	67697037	67805865	17	0.91	LARGE-GAIN	FOCAL	4	"C16orf86,ENKD1,GFOD2,RANBP10"
TCGA.CK.5914.01A	16	67719313	67805865	13	0.7338	LARGE-GAIN	FOCAL	2	"GFOD2,RANBP10"
TCGA.AA.A010.01A	16	67760304	67840174	14	0.7619	LARGE-GAIN	FOCAL	1	RANBP10
TCGA.A6.3808.01A	16	67763593	67840174	9	0.9748	LARGE-GAIN	FOCAL	1	RANBP10
TCGA.AG.A015.01A	16	67902177	68009620	36	0.7042	LARGE-GAIN	FOCAL	9	"CTRL,DPEP3,EDC4,LCAT,NRN1L,NUTF2,PSKH1,PSMB10,SLC12A4"
TCGA.AG.A01W.01A	16	67907376	67922197	10	0.8809	LARGE-GAIN	FOCAL	2	"EDC4,NRN1L"
TCGA.AG.3909.01A	16	67942601	67973766	8	0.962	LARGE-GAIN	FOCAL	3	"CTRL,PSKH1,PSMB10"
TCGA.AG.3909.01A	16	68071890	68160299	16	0.8065	LARGE-GAIN	FOCAL	2	"DUS2,NFATC3"
TCGA.CK.5914.01A	16	68083329	68103979	7	0.7876	LARGE-GAIN	FOCAL	1	DUS2
TCGA.AG.A015.01A	16	68094904	68112288	8	0.8074	LARGE-GAIN	FOCAL	1	DUS2
TCGA.AG.A01W.01A	16	68526535	68531576	9	0.8216	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3611.01A	16	68591884	68596930	3	0.8469	LARGE-GAIN	FOCAL	1	ZFP90
TCGA.AG.3909.01A	16	68679205	68855863	24	1.0964	LARGE-GAIN	FOCAL	2	"CDH1,CDH3"
TCGA.AA.A00N.01A	16	68712353	68855863	23	0.7379	LARGE-GAIN	FOCAL	2	"CDH1,CDH3"
TCGA.AG.3909.01A	16	68857280	69143287	23	0.7313	LARGE-GAIN	FOCAL	3	"CDH1,HAS3,TANGO6"
TCGA.AA.A00N.01A	16	68934295	69117337	11	0.6789	LARGE-GAIN	FOCAL	1	TANGO6
TCGA.AA.A010.01A	16	69458540	69726510	18	0.6816	LARGE-GAIN	FOCAL	2	"CYB5B,NFAT5"
TCGA.AG.3909.01A	16	69748816	69951582	19	1.1891	LARGE-GAIN	FOCAL	3	"NOB1,NQO1,WWP2"
TCGA.AG.3906.01A	16	69782107	69788459	5	0.943	LARGE-GAIN	FOCAL	1	NOB1
TCGA.AG.3909.01A	16	70161111	70187243	14	0.751	LARGE-GAIN	FOCAL	1	PDPR
TCGA.CK.5914.01A	16	70162631	70211125	17	0.7387	LARGE-GAIN	FOCAL	2	"CLEC18C,PDPR"
TCGA.AG.3906.01A	16	70286572	70358440	24	0.7868	LARGE-GAIN	FOCAL	2	"AARS,DDX19B"
TCGA.AA.A00L.01A	16	70333139	70432098	29	0.8074	LARGE-GAIN	FOCAL	3	"DDX19A,DDX19B,ST3GAL2"
TCGA.AA.A010.01A	16	70333139	70432098	29	0.8045	LARGE-GAIN	FOCAL	3	"DDX19A,DDX19B,ST3GAL2"
TCGA.AG.3909.01A	16	70349844	70400475	17	0.9532	LARGE-GAIN	FOCAL	2	"DDX19A,DDX19B"
TCGA.AA.A00N.01A	16	70363145	70380836	6	1.3581	LARGE-GAIN	FOCAL	2	"DDX19A,DDX19B"
TCGA.AG.A00Y.01A	16	70503044	70509216	3	5.4668	LARGE-GAIN	FOCAL	1	FUK
TCGA.AG.3909.01A	16	70530119	70605549	36	1.0168	LARGE-GAIN	FOCAL	2	"COG4,SF3B3"
TCGA.AA.A010.01A	16	70546100	70680766	30	0.7689	LARGE-GAIN	FOCAL	3	"COG4,IL34,SF3B3"
TCGA.CK.5914.01A	16	70557229	70680766	26	0.7526	LARGE-GAIN	FOCAL	3	"COG4,IL34,SF3B3"
TCGA.AG.3909.01A	16	70796379	70815735	5	1.2862	LARGE-GAIN	FOCAL	1	VAC14
TCGA.D5.5539	16	70850892	71202488	96	0.6977	LARGE-GAIN	FOCAL	1	HYDIN
TCGA.CK.5914.01A	16	70852194	70917776	24	1.3329	LARGE-GAIN	FOCAL	1	HYDIN
TCGA.AG.3909.01A	16	70852194	71163492	70	1.1298	LARGE-GAIN	FOCAL	1	HYDIN
TCGA.AA.A00N.01A	16	70852194	71220612	62	0.9117	LARGE-GAIN	FOCAL	1	HYDIN
TCGA.G4.6310	16	70896032	70918799	13	0.8206	LARGE-GAIN	FOCAL	1	HYDIN
TCGA.CK.5914.01A	16	70975507	71103142	24	1.0407	LARGE-GAIN	FOCAL	1	HYDIN
TCGA.A6.4107	16	70993263	71202488	47	0.8399	LARGE-GAIN	FOCAL	1	HYDIN
TCGA.AH.6544	16	71149659	71200048	8	0.8015	LARGE-GAIN	FOCAL	1	HYDIN
TCGA.CK.5914.01A	16	71392644	71423615	11	0.8559	LARGE-GAIN	FOCAL	1	CALB2
TCGA.AG.3909.01A	16	71411513	71423615	8	1.2006	LARGE-GAIN	FOCAL	1	CALB2
TCGA.AA.3864	16	71420576	71495523	24	0.7617	LARGE-GAIN	FOCAL	2	"CALB2,ZNF23"
TCGA.AA.A010.01A	16	71800247	71807097	4	1.1992	LARGE-GAIN	FOCAL	1	AP1G1
TCGA.AA.A010.01A	16	71997056	72032124	14	0.7029	LARGE-GAIN	FOCAL	1	PKD1L3
TCGA.AA.A010.01A	16	72033581	72057970	9	1.4056	LARGE-GAIN	FOCAL	2	"DHODH,PKD1L3"
TCGA.AG.3909.01A	16	72054975	72110172	15	1.246	LARGE-GAIN	FOCAL	3	"DHODH,HP,HPR"
TCGA.AA.A00N.01A	16	72054975	72198626	59	0.8411	LARGE-GAIN	FOCAL	6	"DHODH,DHX38,HP,HPR,PMFBP1,TXNL4B"
TCGA.CK.5914.01A	16	72088453	72110172	12	1.4151	LARGE-GAIN	FOCAL	2	"HP,HPR"
TCGA.AA.A010.01A	16	72120496	72153145	26	1.1331	LARGE-GAIN	FOCAL	3	"DHX38,PMFBP1,TXNL4B"
TCGA.AG.3909.01A	16	72120496	72164142	34	0.7939	LARGE-GAIN	FOCAL	3	"DHX38,PMFBP1,TXNL4B"
TCGA.AA.A00L.01A	16	72122867	72137479	13	0.9184	LARGE-GAIN	FOCAL	2	"DHX38,TXNL4B"
TCGA.A6.3808.01A	16	72137479	74335415	51	0.9541	LARGE-GAIN	FOCAL	5	"C16orf47,DHX38,PMFBP1,PSMD7,ZFHX3"
TCGA.CK.5914.01A	16	72143281	72205005	22	0.9111	LARGE-GAIN	FOCAL	2	"DHX38,PMFBP1"
TCGA.AA.A010.01A	16	72153703	72188123	16	0.7282	LARGE-GAIN	FOCAL	1	PMFBP1
TCGA.AG.3909.01A	16	72164380	72205005	9	1.1093	LARGE-GAIN	FOCAL	1	PMFBP1
TCGA.AA.A010.01A	16	73161214	74339210	10	0.8665	LARGE-GAIN	FOCAL	2	"C16orf47,PSMD7"
TCGA.AA.3850	16	73489032	73501535	5	0.71935	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	16	74455023	74537382	25	0.9576	LARGE-GAIN	FOCAL	2	"CLEC18B,GLG1"
TCGA.CK.5914.01A	16	74908099	74999599	23	0.8291	LARGE-GAIN	FOCAL	1	WDR59
TCGA.AG.3909.01A	16	74908099	75140362	25	1.107	LARGE-GAIN	FOCAL	2	"WDR59,ZNRF1"
TCGA.DM.A1D6	16	75225021	75227982	3	0.9254	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5820	16	75238102	75294588	19	0.74	LARGE-GAIN	FOCAL	3	"BCAR1,CTRB1,CTRB2"
TCGA.AA.3844	16	75897538	75903495	4	0.9412	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	16	76311503	76513287	12	1.0063	LARGE-GAIN	FOCAL	1	CNTNAP4
TCGA.AA.3509.01A	16	76350260	76587142	21	0.7365	LARGE-GAIN	FOCAL	1	CNTNAP4
TCGA.AA.3941	16	77110440	77112218	5	1.0641	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	16	77234873	77277004	26	0.8163	LARGE-GAIN	FOCAL	1	SYCE1L
TCGA.AG.3909.01A	16	77317802	81015350	60	0.7727	LARGE-GAIN	FOCAL	9	"ADAMTS18,CDYL2,CLEC3A,CMC2,DYNLRB2,MAF,NUDT7,VAT1L,WWOX"
TCGA.D5.6532	16	78381262	78385481	3	1.5107	LARGE-GAIN	FOCAL	1	WWOX
TCGA.AF.3913	16	79189839	79229822	45	0.8259	LARGE-GAIN	FOCAL	1	WWOX
TCGA.AA.3941	16	80886787	81972267	615	0.813	LARGE-GAIN	FOCAL	10	"ATMIN,BCO1,C16orf46,CENPN,CMC2,CMIP,GAN,GCSH,PKD1L2,PLCG2"
TCGA.AA.A00D.01A	16	81030882	81076734	10	0.9019	LARGE-GAIN	FOCAL	3	"ATMIN,CENPN,CMC2"
TCGA.AG.3906.01A	16	81050864	81087590	13	1.0836	LARGE-GAIN	FOCAL	3	"ATMIN,C16orf46,CENPN"
TCGA.AG.3909.01A	16	81142116	81319096	50	1.111	LARGE-GAIN	FOCAL	2	"BCO1,PKD1L2"
TCGA.AA.A00N.01A	16	81145746	81279040	41	1.0489	LARGE-GAIN	FOCAL	2	"BCO1,PKD1L2"
TCGA.AG.3909.01A	16	81944074	82131668	23	0.9959	LARGE-GAIN	FOCAL	3	"HSD17B2,PLCG2,SDR42E1"
TCGA.AG.3909.01A	16	82203657	83828542	15	1.0354	LARGE-GAIN	FOCAL	2	"CDH13,MPHOSPH6"
TCGA.AA.3872	16	82540805	82543377	3	1.8624	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	83050160	83073652	8	1.0042	LARGE-GAIN	FOCAL	1	CDH13
TCGA.AG.A00C.01A	16	83842241	83940555	3	0.6908	LARGE-GAIN	FOCAL	2	"HSBP1,MLYCD"
TCGA.AA.A00Q.01A	16	84046535	84228051	58	0.6782	LARGE-GAIN	FOCAL	6	"ADAD2,DNAAF1,HSDL1,MBTPS1,SLC38A8,TAF1C"
TCGA.AA.A010.01A	16	84065425	84088007	5	1.1262	LARGE-GAIN	FOCAL	2	"MBTPS1,SLC38A8"
TCGA.AA.A010.01A	16	84402182	84623669	30	0.7558	LARGE-GAIN	FOCAL	3	"ATP2C2,COTL1,TLDC1"
TCGA.AA.3967.01A	16	84474421	84479893	3	1.7472	LARGE-GAIN	FOCAL	1	ATP2C2
TCGA.AG.3906.01A	16	84684414	84695137	5	0.9823	LARGE-GAIN	FOCAL	1	KLHL36
TCGA.AA.A010.01A	16	84797640	84882944	8	0.9636	LARGE-GAIN	FOCAL	2	"CRISPLD2,USP10"
TCGA.AA.A00L.01A	16	84884134	85105377	19	0.8865	LARGE-GAIN	FOCAL	3	"CRISPLD2,KIAA0513,ZDHHC7"
TCGA.AG.3909.01A	16	84900505	84922796	8	1.2009	LARGE-GAIN	FOCAL	1	CRISPLD2
TCGA.AG.3906.01A	16	85711766	85721018	4	1.187	LARGE-GAIN	FOCAL	1	GINS2
TCGA.AG.A01W.01A	16	86575131	87126475	22	0.8066	LARGE-GAIN	FOCAL	3	"FOXC2,FOXL1,MTHFSD"
TCGA.DM.A1HB	16	86763554	86771100	11	1.1631	LARGE-GAIN	FOCAL	0	None
TCGA.EI.6509	16	86771068	86771844	3	0.9748	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	87292386	87774058	67	0.7121	LARGE-GAIN	FOCAL	6	"C16orf95,FBXO31,JPH3,KLHDC4,MAP1LC3B,ZCCHC14"
TCGA.AA.A00Z.01A	16	87452394	88599928	6	1.8448	LARGE-GAIN	FOCAL	8	"BANP,CA5A,JPH3,KLHDC4,SLC7A5,ZCCHC14,ZFPM1,ZNF469"
TCGA.AM.5820	16	87859175	87878267	6	1.3959	LARGE-GAIN	FOCAL	1	SLC7A5
TCGA.AG.A01W.01A	16	88155469	88316403	50	0.7463	LARGE-GAIN	FOCAL	0	None
TCGA.T9.A92H	16	88176079	88253714	5	0.8866	LARGE-GAIN	FOCAL	0	None
TCGA.AM.5820	16	88299490	88612012	35	0.9228	LARGE-GAIN	FOCAL	2	"ZFPM1,ZNF469"
TCGA.AM.5820	16	89339570	89375238	10	0.8948	LARGE-GAIN	FOCAL	1	ANKRD11
TCGA.AA.A00Q.01A	16	89623283	89757809	19	0.8563	LARGE-GAIN	FOCAL	7	"CDK10,CHMP1A,CPNE7,DPEP1,RPL13,SPATA33,SPG7"
TCGA.AM.5820	16	89630310	89720908	16	0.9196	LARGE-GAIN	FOCAL	4	"CHMP1A,CPNE7,DPEP1,RPL13"
TCGA.AA.A02Y	16	90158837	90163274	2	0.6993	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3986	17	808735	853631	13	0.6838	LARGE-GAIN	FOCAL	1	NXN
TCGA.AA.3870	17	847513	853631	3	1.5385	LARGE-GAIN	FOCAL	1	NXN
TCGA.AA.A024.01A	17	1795080	1800318	3	1.334	LARGE-GAIN	FOCAL	1	RPA1
TCGA.AA.A00N.01A	17	1985066	2139746	6	1.0258	LARGE-GAIN	FOCAL	1	SMG6
TCGA.AA.A01F.01A	17	2264882	2270548	7	0.7514	LARGE-GAIN	FOCAL	1	SGSM2
TCGA.AG.A01W.01A	17	2541594	2550706	11	0.8347	LARGE-GAIN	FOCAL	1	PAFAH1B1
TCGA.AA.A024.01A	17	2597163	2607629	8	0.8896	LARGE-GAIN	FOCAL	1	CLUH
TCGA.AA.A010.01A	17	2808523	2930211	20	0.7776	LARGE-GAIN	FOCAL	1	RAP1GAP2
TCGA.AZ.4684.01A	17	3343404	3365735	5	1.0309	LARGE-GAIN	FOCAL	1	SPATA22
TCGA.AA.A010.01A	17	3646751	3719401	22	0.7098	LARGE-GAIN	FOCAL	2	"C17orf85,ITGAE"
TCGA.AA.A024.01A	17	3806459	3806838	2	3.374	LARGE-GAIN	FOCAL	1	P2RX1
TCGA.AG.3906.01A	17	3839514	3856586	7	1.0692	LARGE-GAIN	FOCAL	1	ATP2A3
TCGA.AA.A010.01A	17	3952961	3979934	16	1.0301	LARGE-GAIN	FOCAL	1	ZZEF1
TCGA.AG.3906.01A	17	4904009	4910521	9	0.8379	LARGE-GAIN	FOCAL	1	KIF1C
TCGA.A6.3808.01A	17	5403900	6538291	74	0.8195	LARGE-GAIN	FOCAL	7	"AIPL1,FAM64A,KIAA0753,LOC728392,NLRP1,PITPNM3,WSCD1"
TCGA.AA.A010.01A	17	5433759	5486967	12	0.921	LARGE-GAIN	FOCAL	1	NLRP1
TCGA.AA.A00N.01A	17	5440118	5486967	8	1.7192	LARGE-GAIN	FOCAL	1	NLRP1
TCGA.AA.A01Q.01A	17	5442698	5486967	7	0.7344	LARGE-GAIN	FOCAL	1	NLRP1
TCGA.AA.A00N.01A	17	6373553	6386785	8	0.7123	LARGE-GAIN	FOCAL	1	PITPNM3
TCGA.AF.3914.01A	17	6375930	6381245	4	0.8795	LARGE-GAIN	FOCAL	1	PITPNM3
TCGA.AA.A00N.01A	17	6703379	6900128	9	0.7092	LARGE-GAIN	FOCAL	2	"ALOX12,TEKT1"
TCGA.AG.3906.01A	17	7306386	7328970	11	1.0642	LARGE-GAIN	FOCAL	4	"C17orf74,NLGN2,SPEM1,TMEM256"
TCGA.AA.A00A.01A	17	7399777	7414507	15	0.7298	LARGE-GAIN	FOCAL	1	POLR2A
TCGA.AA.A00A.01A	17	7463991	7483745	10	0.7478	LARGE-GAIN	FOCAL	5	"CD68,EIF4A1,SENP3,TNFSF12-TNFSF13,TNFSF13"
TCGA.AG.A032.01A	17	7661761	7662692	3	1.7688	LARGE-GAIN	FOCAL	1	DNAH2
TCGA.AG.3906.01A	17	7792282	7814134	34	0.8406	LARGE-GAIN	FOCAL	1	CHD3
TCGA.AA.A024.01A	17	7800374	7801762	3	3.0359	LARGE-GAIN	FOCAL	1	CHD3
TCGA.AA.A010.01A	17	8151242	8224109	38	0.8439	LARGE-GAIN	FOCAL	5	"ARHGEF15,CTC1,PFAS,RANGRF,SLC25A35"
TCGA.AA.A00A.01A	17	8348982	8366554	7	0.8502	LARGE-GAIN	FOCAL	1	NDEL1
TCGA.AA.A010.01A	17	8366554	8457218	34	0.7536	LARGE-GAIN	FOCAL	2	"MYH10,NDEL1"
TCGA.AA.A010.01A	17	8730462	9086533	32	0.7263	LARGE-GAIN	FOCAL	3	"NTN1,PIK3R5,PIK3R6"
TCGA.A6.2681	17	9056067	9300245	97	0.8706	LARGE-GAIN	FOCAL	2	"NTN1,STX8"
TCGA.AA.A010.01A	17	9281817	9501534	12	0.8072	LARGE-GAIN	FOCAL	2	"CFAP52,STX8"
TCGA.A6.2681	17	9336369	9382449	21	0.8376	LARGE-GAIN	FOCAL	1	STX8
TCGA.AA.A010.01A	17	9590068	10236352	65	0.9216	LARGE-GAIN	FOCAL	6	"DHRS7C,GAS7,GLP2R,MYH13,RCVRN,USP43"
TCGA.AA.A00N.01A	17	10233652	10538683	108	1.0232	LARGE-GAIN	FOCAL	6	"MYH1,MYH13,MYH2,MYH3,MYH4,MYH8"
TCGA.AA.A010.01A	17	10293722	10310038	13	0.9277	LARGE-GAIN	FOCAL	1	MYH8
TCGA.AA.A010.01A	17	10366145	10400999	11	1.0144	LARGE-GAIN	FOCAL	2	"MYH1,MYH4"
TCGA.AA.A010.01A	17	10531884	10542137	11	1.2754	LARGE-GAIN	FOCAL	1	MYH3
TCGA.AA.A010.01A	17	10542945	10600533	20	0.8418	LARGE-GAIN	FOCAL	2	"MYH3,SCO1"
TCGA.AA.A00N.01A	17	11592896	11865167	49	1.0784	LARGE-GAIN	FOCAL	1	DNAH9
TCGA.AG.A00Y.01A	17	12916472	12920978	5	2.7628	LARGE-GAIN	FOCAL	1	ELAC2
TCGA.EI.6885	17	13400634	13471354	28	0.7859	LARGE-GAIN	FOCAL	1	HS3ST3A1
TCGA.AA.A00Q.01A	17	15496599	15535781	8	0.9387	LARGE-GAIN	FOCAL	2	"CDRT1,TRIM16"
TCGA.AA.A00N.01A	17	15935570	15978799	21	0.8603	LARGE-GAIN	FOCAL	1	NCOR1
TCGA.AA.3862.01A	17	16608428	16746934	19	2.5278	LARGE-GAIN	FOCAL	1	CCDC144A
TCGA.DM.A28M.01A	17	16610723	16612278	3	1.8011	LARGE-GAIN	FOCAL	1	CCDC144A
TCGA.AA.3861.01A	17	16610723	16747506	19	2.516	LARGE-GAIN	FOCAL	1	CCDC144A
TCGA.AA.A00N.01A	17	16842874	16891726	6	1.0962	LARGE-GAIN	FOCAL	1	TNFRSF13B
TCGA.AA.A00N.01A	17	16978975	17046818	9	0.8316	LARGE-GAIN	FOCAL	1	MPRIP
TCGA.AF.3914.01A	17	17083258	17088075	3	1.4715	LARGE-GAIN	FOCAL	1	MPRIP
TCGA.AG.3906.01A	17	18010411	18034022	8	0.7159	LARGE-GAIN	FOCAL	2	"DRG2,MYO15A"
TCGA.AA.3930.01A	17	18044286	18044925	2	1.5246	LARGE-GAIN	FOCAL	1	MYO15A
TCGA.AA.3862.01A	17	18291450	18525761	18	2.0106	LARGE-GAIN	FOCAL	2	"EVPLL,LGALS9C"
TCGA.AA.A00N.01A	17	18380087	18486722	10	0.8488	LARGE-GAIN	FOCAL	1	LGALS9C
TCGA.AA.A00D.01A	17	18694202	18785844	7	0.7332	LARGE-GAIN	FOCAL	2	"PRPSAP2,TVP23B"
TCGA.AA.A00N.01A	17	18793073	18880848	15	0.7607	LARGE-GAIN	FOCAL	3	"FAM83G,PRPSAP2,SLC5A10"
TCGA.AD.6888	17	19320878	19497889	34	0.9142	LARGE-GAIN	FOCAL	1	SLC47A1
TCGA.G4.6317	17	19353377	19753548	90	1.3354	LARGE-GAIN	FOCAL	5	"ALDH3A1,ALDH3A2,SLC47A1,SLC47A2,ULK2"
TCGA.AG.A016.01A	17	19643621	19646498	5	0.8079	LARGE-GAIN	FOCAL	1	ALDH3A1
TCGA.AA.A00N.01A	17	19684252	19729429	14	0.8217	LARGE-GAIN	FOCAL	1	ULK2
TCGA.AA.A00Q.01A	17	19741757	19746386	3	1.2076	LARGE-GAIN	FOCAL	1	ULK2
TCGA.AA.A010.01A	17	19880852	20059443	4	1.8763	LARGE-GAIN	FOCAL	2	"AKAP10,SPECC1"
TCGA.AA.3509.01A	17	20363639	20370667	2	2.1993	LARGE-GAIN	FOCAL	1	LGALS9B
TCGA.A6.A56B	17	20522443	25404048	213	0.8225	LARGE-GAIN	FOCAL	10	"C17orf51,CCDC144NL,DHRS7B,KCNJ12,KCNJ18,MAP2K3,MTRNR2L1,NATD1,TMEM11,USP22"
TCGA.DM.A28E	17	20782356	21124722	68	1.0664	LARGE-GAIN	FOCAL	4	"CCDC144NL,DHRS7B,TMEM11,USP22"
TCGA.DC.6682	17	20853294	21527045	111	0.7396	LARGE-GAIN	FOCAL	8	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.AA.3679	17	20983549	21527045	74	0.8164	LARGE-GAIN	FOCAL	7	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11"
TCGA.DM.A28E	17	21127057	21709232	58	1.5403	LARGE-GAIN	FOCAL	5	"C17orf51,KCNJ12,KCNJ18,MAP2K3,NATD1"
TCGA.D5.6535	17	21519099	22235649	55	0.7143	LARGE-GAIN	FOCAL	1	MTRNR2L1
TCGA.EI.7002	17	21527045	25313689	55	0.7513	LARGE-GAIN	FOCAL	1	MTRNR2L1
TCGA.DM.A28E	17	21717444	25313689	52	0.8067	LARGE-GAIN	FOCAL	1	MTRNR2L1
TCGA.G4.6297	17	22049306	22097292	3	0.9989	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A02O	17	22159898	25541571	32	1.3402	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3581	17	22168794	22235649	6	1.6324	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	17	23750750	23755713	4	0.8527	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3994	17	25313689	25923169	111	1.4789	LARGE-GAIN	FOCAL	2	"KSR1,WSB1"
TCGA.AY.A8YK	17	25487138	26072055	116	0.7887	LARGE-GAIN	FOCAL	3	"KSR1,LGALS9,WSB1"
TCGA.AA.A00D.01A	17	25621341	25639198	9	0.8561	LARGE-GAIN	FOCAL	1	WSB1
TCGA.AA.3994	17	25945107	26085107	32	1.1473	LARGE-GAIN	FOCAL	3	"KSR1,LGALS9,NOS2"
TCGA.CK.5914.01A	17	25958210	26092520	19	0.9967	LARGE-GAIN	FOCAL	2	"LGALS9,NOS2"
TCGA.AA.A00N.01A	17	25969215	26084220	8	0.7837	LARGE-GAIN	FOCAL	2	"LGALS9,NOS2"
TCGA.AA.A00N.01A	17	26085860	26092520	7	1.1853	LARGE-GAIN	FOCAL	1	NOS2
TCGA.A6.3808.01A	17	26105669	26209928	12	1.1934	LARGE-GAIN	FOCAL	2	"LYRM9,NOS2"
TCGA.CK.5914.01A	17	26449592	26603853	12	0.7962	LARGE-GAIN	FOCAL	1	NLK
TCGA.AA.A00D.01A	17	26653522	26694739	17	0.7314	LARGE-GAIN	FOCAL	7	"IFT20,POLDIP2,SEBOX,TMEM199,TMEM97,TNFAIP1,VTN"
TCGA.AA.A00L.01A	17	26851474	26988707	82	0.8968	LARGE-GAIN	FOCAL	8	"ALDOC,FOXN1,KIAA0100,PIGS,SDF2,SGK494,SPAG5,UNC119"
TCGA.AG.A00C.01A	17	26857725	26861362	2	0.7423	LARGE-GAIN	FOCAL	1	FOXN1
TCGA.AG.3906.01A	17	26881827	26906715	16	0.7791	LARGE-GAIN	FOCAL	3	"ALDOC,PIGS,SPAG5"
TCGA.AA.A00N.01A	17	26897823	26900493	3	0.7242	LARGE-GAIN	FOCAL	2	"ALDOC,PIGS"
TCGA.AG.3906.01A	17	26910501	26958851	34	1.2865	LARGE-GAIN	FOCAL	3	"KIAA0100,SGK494,SPAG5"
TCGA.AA.A00L.01A	17	27000402	27026750	28	1.2878	LARGE-GAIN	FOCAL	1	SUPT6H
TCGA.CK.5914.01A	17	27008852	27022323	14	1.1615	LARGE-GAIN	FOCAL	1	SUPT6H
TCGA.AA.A004.01A	17	27011556	27028418	17	0.8017	LARGE-GAIN	FOCAL	1	SUPT6H
TCGA.AA.A00D.01A	17	27046959	27060991	7	0.9487	LARGE-GAIN	FOCAL	3	"NEK8,RPL23A,TLCD1"
TCGA.AG.3906.01A	17	27047673	27184922	25	1.2742	LARGE-GAIN	FOCAL	6	"ERAL1,FAM222B,NEK8,RPL23A,TLCD1,TRAF4"
TCGA.AA.3869	17	27286661	27424315	38	0.7214	LARGE-GAIN	FOCAL	4	"MYO18A,PIPOX,SEZ6,TIAF1"
TCGA.AA.3517	17	27342480	27353068	7	1.0712	LARGE-GAIN	FOCAL	0	None
TCGA.CA.6719	17	27342480	27536373	43	0.757	LARGE-GAIN	FOCAL	3	"MYO18A,PIPOX,TIAF1"
TCGA.AA.3517	17	27358975	27536631	38	1.4729	LARGE-GAIN	FOCAL	3	"MYO18A,PIPOX,TIAF1"
TCGA.AG.3909.01A	17	27370197	27383166	8	0.8184	LARGE-GAIN	FOCAL	1	PIPOX
TCGA.CK.5914.01A	17	27370197	27383166	9	1.1079	LARGE-GAIN	FOCAL	1	PIPOX
TCGA.AA.3869	17	27431424	27536373	15	1.0402	LARGE-GAIN	FOCAL	1	MYO18A
TCGA.AA.3517	17	27537625	27706885	24	1.0576	LARGE-GAIN	FOCAL	2	"CRYBA1,NUFIP2"
TCGA.AA.A00L.01A	17	27573808	27869532	30	1.1205	LARGE-GAIN	FOCAL	3	"CRYBA1,NUFIP2,TAOK1"
TCGA.AA.A00D.01A	17	27580609	27869532	26	0.7562	LARGE-GAIN	FOCAL	3	"CRYBA1,NUFIP2,TAOK1"
TCGA.AG.3906.01A	17	27889577	27905685	7	1.6064	LARGE-GAIN	FOCAL	3	"ABHD15,GIT1,TP53I13"
TCGA.AA.A00L.01A	17	27957822	28256889	15	1.0674	LARGE-GAIN	FOCAL	2	"EFCAB5,SSH2"
TCGA.AA.A00L.01A	17	28445048	29159302	76	1.0853	LARGE-GAIN	FOCAL	9	"ATAD5,BLMH,CPD,CRLF3,GOSR1,NSRP1,SLC6A4,TBC1D29,TMIGD1"
TCGA.AA.3509.01A	17	28705947	28770810	11	0.7256	LARGE-GAIN	FOCAL	1	CPD
TCGA.AZ.4684.01A	17	28747807	28770810	9	0.7983	LARGE-GAIN	FOCAL	1	CPD
TCGA.AY.4070	17	28860579	29148771	30	2.2769	LARGE-GAIN	FOCAL	2	"CRLF3,TBC1D29"
TCGA.AA.A02O	17	28893646	29107707	19	0.959	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A02O	17	29147163	29628548	50	1.3762	LARGE-GAIN	FOCAL	7	"ADAP2,ATAD5,CRLF3,NF1,OMG,RNF135,TEFM"
TCGA.AG.A00C.01A	17	29161117	29171797	6	0.7286	LARGE-GAIN	FOCAL	1	ATAD5
TCGA.AA.A00A.01A	17	29161117	29220275	20	0.9739	LARGE-GAIN	FOCAL	1	ATAD5
TCGA.AA.A00L.01A	17	29161117	29220275	20	1.5979	LARGE-GAIN	FOCAL	1	ATAD5
TCGA.AA.A00D.01A	17	29161117	29508666	41	0.873	LARGE-GAIN	FOCAL	5	"ADAP2,ATAD5,NF1,RNF135,TEFM"
TCGA.AG.3611.01A	17	29185127	29195293	4	0.9108	LARGE-GAIN	FOCAL	1	ATAD5
TCGA.AY.4070	17	29237701	29265620	4	2.9645	LARGE-GAIN	FOCAL	1	ADAP2
TCGA.DM.A28M.01A	17	29508417	29509486	3	1.5988	LARGE-GAIN	FOCAL	1	NF1
TCGA.AY.4070	17	29508774	29564602	6	2.6063	LARGE-GAIN	FOCAL	1	NF1
TCGA.CK.4948.01B	17	29552111	29556011	5	0.6991	LARGE-GAIN	FOCAL	1	NF1
TCGA.AA.A02O	17	29639589	30289896	162	0.9826	LARGE-GAIN	FOCAL	7	"COPRS,EVI2A,EVI2B,NF1,RAB11FIP4,SUZ12,UTP6"
TCGA.AA.A00D.01A	17	29657266	29758778	20	0.8233	LARGE-GAIN	FOCAL	2	"NF1,RAB11FIP4"
TCGA.AG.A026	17	29722618	29749443	5	0.7182	LARGE-GAIN	FOCAL	1	RAB11FIP4
TCGA.AG.3906.01A	17	29902423	30200666	9	1.5142	LARGE-GAIN	FOCAL	2	"COPRS,UTP6"
TCGA.AA.3869	17	30078298	30328604	50	0.6927	LARGE-GAIN	FOCAL	3	"COPRS,SUZ12,UTP6"
TCGA.AA.A00D.01A	17	30190339	30520138	42	0.8175	LARGE-GAIN	FOCAL	4	"LRRC37B,RHOT1,SUZ12,UTP6"
TCGA.AA.3861.01A	17	30302474	30380218	22	1.8946	LARGE-GAIN	FOCAL	2	"LRRC37B,SUZ12"
TCGA.AA.3862.01A	17	30303489	30380218	21	1.6487	LARGE-GAIN	FOCAL	2	"LRRC37B,SUZ12"
TCGA.AA.A02O	17	30314503	30784033	55	1.3895	LARGE-GAIN	FOCAL	7	"C17orf75,LRRC37B,PSMD11,RHBDL3,RHOT1,SUZ12,ZNF207"
TCGA.AA.3517	17	30489884	30602137	28	1.0731	LARGE-GAIN	FOCAL	2	"RHBDL3,RHOT1"
TCGA.AA.A00D.01A	17	30677077	30814642	25	0.7738	LARGE-GAIN	FOCAL	3	"CDK5R1,PSMD11,ZNF207"
TCGA.A6.3808.01A	17	30696596	32598103	64	0.7722	LARGE-GAIN	FOCAL	9	"ASIC2,CCL2,CCL7,CDK5R1,MYO1D,PSMD11,SPACA3,TMEM98,ZNF207"
TCGA.AG.3906.01A	17	30804514	30814642	6	1.3628	LARGE-GAIN	FOCAL	2	"CDK5R1,PSMD11"
TCGA.AA.A00N.01A	17	30932087	31203743	20	0.771	LARGE-GAIN	FOCAL	1	MYO1D
TCGA.AG.3906.01A	17	31260144	31267792	5	1.5183	LARGE-GAIN	FOCAL	1	TMEM98
TCGA.AA.A00N.01A	17	31318877	32690096	35	0.9068	LARGE-GAIN	FOCAL	8	"ASIC2,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,SPACA3"
TCGA.AA.3517	17	31484398	31542300	33	1.501	LARGE-GAIN	FOCAL	1	ASIC2
TCGA.AA.3517	17	31552548	31669988	64	1.1735	LARGE-GAIN	FOCAL	1	ASIC2
TCGA.AA.3517	17	31670513	31693846	16	1.4648	LARGE-GAIN	FOCAL	1	ASIC2
TCGA.AA.3517	17	31695773	31988688	198	1.0453	LARGE-GAIN	FOCAL	1	ASIC2
TCGA.DM.A1D0	17	32626506	33252340	330	2.2139	LARGE-GAIN	FOCAL	5	"C17orf102,CCL1,CCL13,CCL8,TMEM132E"
TCGA.AA.A024.01A	17	33317965	33318696	2	2.5708	LARGE-GAIN	FOCAL	1	LIG3
TCGA.AA.A00N.01A	17	33325238	33353343	15	0.81	LARGE-GAIN	FOCAL	2	"LIG3,RFFL"
TCGA.AA.3939.01A	17	33329655	33341691	5	1.8725	LARGE-GAIN	FOCAL	2	"LIG3,RFFL"
TCGA.AA.3939.01A	17	33466901	33481543	7	0.8071	LARGE-GAIN	FOCAL	2	"NLE1,UNC45B"
TCGA.AA.A00N.01A	17	33963348	34009663	9	0.8863	LARGE-GAIN	FOCAL	1	AP2B1
TCGA.AA.A010.01A	17	34122230	34344809	54	0.7973	LARGE-GAIN	FOCAL	10	"CCL14,CCL15,CCL16,CCL23,CCL5,HEATR9,LYZL6,MMP28,RDM1,TAF15"
TCGA.AA.A00D.01A	17	34144638	34173828	11	0.8636	LARGE-GAIN	FOCAL	1	TAF15
TCGA.AA.A00L.01A	17	34144638	34173828	11	1.5667	LARGE-GAIN	FOCAL	1	TAF15
TCGA.AG.3611.01A	17	34169331	34185875	9	0.7208	LARGE-GAIN	FOCAL	2	"HEATR9,TAF15"
TCGA.AA.A00N.01A	17	34171030	34341314	44	0.7979	LARGE-GAIN	FOCAL	9	"CCL14,CCL15,CCL16,CCL23,CCL5,HEATR9,LYZL6,RDM1,TAF15"
TCGA.A6.3808.01A	17	34173828	34397768	46	0.955	LARGE-GAIN	FOCAL	10	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL5,HEATR9,LYZL6,RDM1,TAF15"
TCGA.AG.3611.01A	17	34189948	34193651	7	0.9996	LARGE-GAIN	FOCAL	1	HEATR9
TCGA.AA.A00N.01A	17	34344809	34417267	7	1.7748	LARGE-GAIN	FOCAL	3	"CCL18,CCL23,CCL3"
TCGA.AA.3862.01A	17	34398255	34641414	11	1.3617	LARGE-GAIN	FOCAL	10	"CCL18,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,LOC101060321,TBC1D3F,TBC1D3H"
TCGA.AA.A00N.01A	17	34431238	34539846	6	0.8055	LARGE-GAIN	FOCAL	5	"CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2"
TCGA.AZ.5403	17	34443799	34477479	14	0.7005	LARGE-GAIN	FOCAL	0	None
TCGA.G4.6299	17	34443799	34477479	14	1.0553	LARGE-GAIN	FOCAL	0	None
TCGA.AH.6643	17	34455575	34477479	10	1.5599	LARGE-GAIN	FOCAL	0	None
TCGA.CM.5341	17	34461902	34465374	3	1.1012	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	17	34848621	34945607	17	0.9355	LARGE-GAIN	FOCAL	4	"GGNBP2,MYO19,PIGW,ZNHIT3"
TCGA.AA.3869	17	35207553	35737414	120	1.3613	LARGE-GAIN	FOCAL	4	"AATF,ACACA,C17orf78,LHX1"
TCGA.AA.A00D.01A	17	35307462	35343889	4	1.0798	LARGE-GAIN	FOCAL	1	AATF
TCGA.AA.A00L.01A	17	35307462	35783567	68	0.9245	LARGE-GAIN	FOCAL	4	"AATF,ACACA,C17orf78,TADA2A"
TCGA.AA.A00N.01A	17	35345826	35687112	62	0.7034	LARGE-GAIN	FOCAL	2	"AATF,ACACA"
TCGA.AA.3994	17	35632978	35675510	10	1.03	LARGE-GAIN	FOCAL	1	ACACA
TCGA.AA.A00D.01A	17	35641691	35836880	18	0.7471	LARGE-GAIN	FOCAL	3	"ACACA,C17orf78,TADA2A"
TCGA.AA.A00Q.01A	17	35656145	35836880	17	0.784	LARGE-GAIN	FOCAL	3	"ACACA,C17orf78,TADA2A"
TCGA.AG.3594	17	35675510	35763862	14	0.7236	LARGE-GAIN	FOCAL	2	"ACACA,C17orf78"
TCGA.AA.3994	17	35693857	35744405	9	1.4982	LARGE-GAIN	FOCAL	2	"ACACA,C17orf78"
TCGA.AG.3906.01A	17	35734773	35836880	22	0.9291	LARGE-GAIN	FOCAL	3	"ACACA,C17orf78,TADA2A"
TCGA.AA.3994	17	35750376	35813379	13	1.0233	LARGE-GAIN	FOCAL	2	"ACACA,TADA2A"
TCGA.AA.A00L.01A	17	35786977	35827536	9	1.3438	LARGE-GAIN	FOCAL	1	TADA2A
TCGA.AA.A00L.01A	17	35830452	36104520	51	0.9158	LARGE-GAIN	FOCAL	5	"DDX52,DUSP14,HNF1B,SYNRG,TADA2A"
TCGA.AA.A00D.01A	17	35921227	35986774	20	0.8982	LARGE-GAIN	FOCAL	2	"DDX52,SYNRG"
TCGA.A6.3808.01A	17	35992105	36104520	13	0.6812	LARGE-GAIN	FOCAL	2	"DDX52,HNF1B"
TCGA.AA.A00N.01A	17	36003305	36060957	4	1.4631	LARGE-GAIN	FOCAL	2	"DDX52,HNF1B"
TCGA.AG.A01W.01A	17	36160140	36181490	11	0.7115	LARGE-GAIN	FOCAL	0	None
TCGA.EI.6509	17	36441092	36524253	11	1.7972	LARGE-GAIN	FOCAL	3	"GPR179,MRPL45,SOCS7"
TCGA.AA.3862.01A	17	36454378	36462449	3	3.0291	LARGE-GAIN	FOCAL	1	MRPL45
TCGA.AA.A00L.01A	17	36455290	36478334	5	1.514	LARGE-GAIN	FOCAL	1	MRPL45
TCGA.EI.6509	17	36605489	36845825	42	2.6471	LARGE-GAIN	FOCAL	3	"ARHGAP23,C17orf96,SRCIN1"
TCGA.AA.3862.01A	17	36633873	36656808	10	1.6888	LARGE-GAIN	FOCAL	1	ARHGAP23
TCGA.AG.3898	17	36648452	36859308	35	2.118	LARGE-GAIN	FOCAL	3	"ARHGAP23,C17orf96,SRCIN1"
TCGA.AF.3914.01A	17	36714412	36863141	10	0.6997	LARGE-GAIN	FOCAL	3	"C17orf96,MLLT6,SRCIN1"
TCGA.AG.3891.01A	17	36863141	36876636	12	0.9749	LARGE-GAIN	FOCAL	1	MLLT6
TCGA.AF.3914.01A	17	36863680	36865693	4	2.111	LARGE-GAIN	FOCAL	1	MLLT6
TCGA.AG.3906.01A	17	36863680	36895278	11	1.8566	LARGE-GAIN	FOCAL	3	"CISD3,MLLT6,PCGF2"
TCGA.AF.3914.01A	17	36868060	36872570	4	0.9973	LARGE-GAIN	FOCAL	1	MLLT6
TCGA.AF.3914.01A	17	36880864	36909396	10	1.1087	LARGE-GAIN	FOCAL	4	"CISD3,MLLT6,PCGF2,PSMB3"
TCGA.AG.3906.01A	17	36895791	37006355	31	1.0315	LARGE-GAIN	FOCAL	6	"C17orf98,CWC25,PCGF2,PIP4K2B,PSMB3,RPL23"
TCGA.AF.3914.01A	17	36912088	36966672	20	1.5413	LARGE-GAIN	FOCAL	3	"CWC25,PIP4K2B,PSMB3"
TCGA.AA.A00O.01A	17	36958303	36958916	2	4.6365	LARGE-GAIN	FOCAL	1	CWC25
TCGA.AA.A02K.01A	17	36971085	37071265	16	0.6986	LARGE-GAIN	FOCAL	4	"C17orf98,CWC25,LASP1,RPL23"
TCGA.AA.A00N.01A	17	36977114	36997387	5	0.7448	LARGE-GAIN	FOCAL	2	"C17orf98,CWC25"
TCGA.AA.A00N.01A	17	37046618	37074809	5	0.7319	LARGE-GAIN	FOCAL	1	LASP1
TCGA.AG.3906.01A	17	37046618	37107787	9	0.952	LARGE-GAIN	FOCAL	2	"FBXO47,LASP1"
TCGA.EI.6509	17	37055814	37101379	16	2.6211	LARGE-GAIN	FOCAL	2	"FBXO47,LASP1"
TCGA.AA.A02K.01A	17	37074851	37459765	81	1.1033	LARGE-GAIN	FOCAL	8	"ARL5C,CACNB1,FBXL20,FBXO47,LASP1,PLXDC1,RPL19,STAC2"
TCGA.AG.3909.01A	17	37118083	37265472	13	0.9095	LARGE-GAIN	FOCAL	2	"FBXO47,PLXDC1"
TCGA.AA.A010.01A	17	37118083	37295869	16	0.6838	LARGE-GAIN	FOCAL	2	"FBXO47,PLXDC1"
TCGA.AA.A00N.01A	17	37224041	37295869	14	0.9333	LARGE-GAIN	FOCAL	1	PLXDC1
TCGA.AG.4009.01A	17	37234136	37351104	23	0.6876	LARGE-GAIN	FOCAL	3	"ARL5C,CACNB1,PLXDC1"
TCGA.AD.6888	17	37257901	37703739	52	1.7441	LARGE-GAIN	FOCAL	8	"ARL5C,CACNB1,CDK12,FBXL20,MED1,PLXDC1,RPL19,STAC2"
TCGA.AA.A00L.01A	17	37421577	37665885	36	1.3095	LARGE-GAIN	FOCAL	3	"CDK12,FBXL20,MED1"
TCGA.AA.A02K.01A	17	37499368	37587309	11	1.3919	LARGE-GAIN	FOCAL	2	"FBXL20,MED1"
TCGA.AA.A02K.01A	17	37588132	37813980	33	0.9371	LARGE-GAIN	FOCAL	5	"CDK12,MED1,NEUROD2,PPP1R1B,STARD3"
TCGA.AG.3883	17	37665553	37726422	16	1.9479	LARGE-GAIN	FOCAL	1	CDK12
TCGA.AA.A00N.01A	17	37676167	37686878	4	1.0475	LARGE-GAIN	FOCAL	1	CDK12
TCGA.AG.3883	17	37745978	37869055	15	2.5033	LARGE-GAIN	FOCAL	7	"ERBB2,NEUROD2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.AF.3914.01A	17	37785352	37868558	35	1.9152	LARGE-GAIN	FOCAL	6	"ERBB2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.AA.3930.01A	17	37786144	37809736	4	0.8247	LARGE-GAIN	FOCAL	2	"PPP1R1B,STARD3"
TCGA.F5.6813	17	37789431	37932773	21	2.6966	LARGE-GAIN	FOCAL	9	"ERBB2,GRB7,IKZF3,MIEN1,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.EI.6509	17	37813855	38040762	37	3.0007	LARGE-GAIN	FOCAL	9	"ERBB2,GRB7,IKZF3,MIEN1,PGAP3,PNMT,STARD3,TCAP,ZPBP2"
TCGA.AH.6643	17	37854506	37904210	6	1.4261	LARGE-GAIN	FOCAL	3	"ERBB2,GRB7,MIEN1"
TCGA.AA.3517	17	37854506	38018802	24	1.27	LARGE-GAIN	FOCAL	4	"ERBB2,GRB7,IKZF3,MIEN1"
TCGA.AY.4070	17	37854506	38040762	29	2.8174	LARGE-GAIN	FOCAL	5	"ERBB2,GRB7,IKZF3,MIEN1,ZPBP2"
TCGA.AH.6643	17	37977540	38128647	27	1.3919	LARGE-GAIN	FOCAL	6	"GSDMA,GSDMB,IKZF3,LRRC3C,ORMDL3,ZPBP2"
TCGA.AA.A00D.01A	17	38026920	38032933	6	1.054	LARGE-GAIN	FOCAL	1	ZPBP2
TCGA.CA.5254	17	38082830	38192632	26	0.8509	LARGE-GAIN	FOCAL	6	"CSF3,GSDMA,LRRC3C,MED24,ORMDL3,PSMD3"
TCGA.AA.3930.01A	17	38187356	38188222	3	1.3958	LARGE-GAIN	FOCAL	1	MED24
TCGA.AA.A00L.01A	17	38187746	38319797	28	1.2218	LARGE-GAIN	FOCAL	5	"CASC3,MED24,MSL1,NR1D1,THRA"
TCGA.AF.3914.01A	17	38191915	38340821	40	1.8707	LARGE-GAIN	FOCAL	6	"CASC3,MED24,MSL1,NR1D1,RAPGEFL1,THRA"
TCGA.AG.3906.01A	17	38192297	38242913	7	1.3754	LARGE-GAIN	FOCAL	2	"MED24,THRA"
TCGA.AA.A00D.01A	17	38253291	38322985	8	0.9869	LARGE-GAIN	FOCAL	3	"CASC3,MSL1,NR1D1"
TCGA.AD.6888	17	38265948	38277467	2	1.147	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	17	38282405	38349864	28	0.6893	LARGE-GAIN	FOCAL	3	"CASC3,MSL1,RAPGEFL1"
TCGA.AA.A00L.01A	17	38322985	38434377	23	0.7123	LARGE-GAIN	FOCAL	3	"CASC3,RAPGEFL1,WIPF2"
TCGA.AF.3914.01A	17	38345079	38349864	9	0.8749	LARGE-GAIN	FOCAL	1	RAPGEFL1
TCGA.AF.A56L	17	38388039	38797241	60	2.458	LARGE-GAIN	FOCAL	9	"CCR7,CDC6,GJD3,IGFBP4,RARA,SMARCE1,TNS4,TOP2A,WIPF2"
TCGA.AA.A010.01A	17	38412644	38447271	9	0.759	LARGE-GAIN	FOCAL	2	"CDC6,WIPF2"
TCGA.AF.3914.01A	17	38412644	38510504	24	2.4154	LARGE-GAIN	FOCAL	3	"CDC6,RARA,WIPF2"
TCGA.AA.A00L.01A	17	38445651	38458108	10	1.3467	LARGE-GAIN	FOCAL	1	CDC6
TCGA.AF.3914.01A	17	38511468	38519766	3	1.2378	LARGE-GAIN	FOCAL	2	"GJD3,RARA"
TCGA.DM.A1D0	17	38555556	38943318	104	0.8557	LARGE-GAIN	FOCAL	10	"CCR7,IGFBP4,KRT222,KRT24,KRT25,KRT26,KRT27,SMARCE1,TNS4,TOP2A"
TCGA.AA.A00N.01A	17	38610133	38721568	17	0.9217	LARGE-GAIN	FOCAL	3	"CCR7,IGFBP4,TNS4"
TCGA.AG.3909.01A	17	38610133	38721568	17	0.8572	LARGE-GAIN	FOCAL	3	"CCR7,IGFBP4,TNS4"
TCGA.AH.6643	17	38668174	38816525	34	1.7341	LARGE-GAIN	FOCAL	3	"CCR7,KRT222,SMARCE1"
TCGA.AG.3883	17	38736230	38763875	11	1.4779	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	17	38787816	38813918	10	0.7232	LARGE-GAIN	FOCAL	2	"KRT222,SMARCE1"
TCGA.AA.A00O.01A	17	38813557	38933756	29	1.1852	LARGE-GAIN	FOCAL	5	"KRT222,KRT24,KRT25,KRT26,KRT27"
TCGA.AA.A00N.01A	17	38854753	38911077	14	1.2777	LARGE-GAIN	FOCAL	2	"KRT24,KRT25"
TCGA.CK.5914.01A	17	38859701	38911077	8	0.7226	LARGE-GAIN	FOCAL	2	"KRT24,KRT25"
TCGA.AF.3914.01A	17	38974632	38978162	5	1.2755	LARGE-GAIN	FOCAL	2	"KRT10,TMEM99"
TCGA.EI.6509	17	38987759	39174278	94	2.6225	LARGE-GAIN	FOCAL	9	"KRT12,KRT20,KRT23,KRT39,KRT40,KRTAP3-1,KRTAP3-2,KRTAP3-3,TMEM99"
TCGA.AA.A00N.01A	17	39017866	39022849	6	1.186	LARGE-GAIN	FOCAL	1	KRT12
TCGA.DM.A1D0	17	39035614	39072233	15	0.7958	LARGE-GAIN	FOCAL	1	KRT20
TCGA.DM.A1D0	17	39078844	39116727	24	2.218	LARGE-GAIN	FOCAL	2	"KRT23,KRT39"
TCGA.AA.A00N.01A	17	39092423	39197064	21	1.2357	LARGE-GAIN	FOCAL	10	"KRT23,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP3-1,KRTAP3-2,KRTAP3-3"
TCGA.AF.A56L	17	39114327	39157254	38	2.458	LARGE-GAIN	FOCAL	4	"KRT39,KRT40,KRTAP3-2,KRTAP3-3"
TCGA.DM.A1D0	17	39139347	39203910	48	0.8007	LARGE-GAIN	FOCAL	9	"KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP3-1,KRTAP3-2,KRTAP3-3"
TCGA.AF.A56L	17	39157386	39161020	6	1.5168	LARGE-GAIN	FOCAL	0	None
TCGA.AF.A56N	17	39278787	39281211	3	1.4294	LARGE-GAIN	FOCAL	1	KRTAP4-12
TCGA.AG.3906.01A	17	39552630	39553396	3	0.7011	LARGE-GAIN	FOCAL	1	KRT31
TCGA.AG.3909.01A	17	39577082	39633267	18	0.8552	LARGE-GAIN	FOCAL	4	"KRT32,KRT35,KRT37,KRT38"
TCGA.AA.A00N.01A	17	39577082	39634566	20	1.2319	LARGE-GAIN	FOCAL	4	"KRT32,KRT35,KRT37,KRT38"
TCGA.AA.3867	17	39720880	39897263	29	0.6932	LARGE-GAIN	FOCAL	7	"EIF1,GAST,HAP1,KRT14,KRT16,KRT17,KRT9"
TCGA.AG.A01W.01A	17	39753921	39788588	12	0.6786	LARGE-GAIN	FOCAL	2	"KRT16,KRT17"
TCGA.AA.3812	17	39865755	39909017	17	1.0187	LARGE-GAIN	FOCAL	2	"GAST,HAP1"
TCGA.AA.3982	17	39874074	39896061	9	1.0414	LARGE-GAIN	FOCAL	1	HAP1
TCGA.AA.3866	17	39896842	39898685	3	1.6676	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3870	17	39896842	39898685	3	1.5056	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3952	17	39896842	39898685	3	1.9375	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3956	17	39896842	39898685	3	1.7172	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3975	17	39896842	39898685	3	1.6622	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	17	39896842	39898685	3	2.1165	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	17	40024014	40048484	14	1.2671	LARGE-GAIN	FOCAL	1	ACLY
TCGA.AA.A02E.01A	17	40269016	40269435	2	4.726	LARGE-GAIN	FOCAL	1	KAT2A
TCGA.AG.4009.01A	17	40271214	40321447	16	0.6795	LARGE-GAIN	FOCAL	4	"HSPB9,KAT2A,KCNH4,RAB5C"
TCGA.AA.A010.01A	17	40370694	40371689	3	1.6037	LARGE-GAIN	FOCAL	1	STAT5B
TCGA.AG.A01W.01A	17	40671666	40679605	13	0.7255	LARGE-GAIN	FOCAL	1	ATP6V0A1
TCGA.AG.3906.01A	17	40673005	40695038	6	1.4963	LARGE-GAIN	FOCAL	2	"ATP6V0A1,NAGLU"
TCGA.AA.A01D.01A	17	40689377	40690634	3	4.967	LARGE-GAIN	FOCAL	1	NAGLU
TCGA.AA.A010.01A	17	40761106	40811460	11	0.9454	LARGE-GAIN	FOCAL	3	"FAM134C,TUBG1,TUBG2"
TCGA.AA.A00L.01A	17	40837925	40880796	36	0.9944	LARGE-GAIN	FOCAL	2	"CNTNAP1,EZH1"
TCGA.CK.5914.01A	17	40850635	40872240	16	0.823	LARGE-GAIN	FOCAL	2	"CNTNAP1,EZH1"
TCGA.AG.4009.01A	17	40975729	41008245	16	0.8017	LARGE-GAIN	FOCAL	4	"AOC2,AOC3,BECN1,PSME3"
TCGA.AA.A010.01A	17	40975729	41062905	21	0.7712	LARGE-GAIN	FOCAL	5	"AOC2,AOC3,BECN1,G6PC,PSME3"
TCGA.AA.A00N.01A	17	40996627	41102560	14	0.7065	LARGE-GAIN	FOCAL	5	"AARSD1,AOC2,AOC3,G6PC,PTGES3L-AARSD1"
TCGA.AG.3906.01A	17	41165017	41180407	10	1.5215	LARGE-GAIN	FOCAL	3	"IFI35,RND2,VAT1"
TCGA.AG.3906.01A	17	41197645	41352147	39	0.6989	LARGE-GAIN	FOCAL	2	"BRCA1,NBR1"
TCGA.AA.A00L.01A	17	41197645	41561369	33	1.0737	LARGE-GAIN	FOCAL	5	"ARL4D,BRCA1,DHX8,NBR1,TMEM106A"
TCGA.AA.A00L.01A	17	41566773	41584389	12	1.3639	LARGE-GAIN	FOCAL	1	DHX8
TCGA.AA.3517	17	41680925	41946179	89	1.2774	LARGE-GAIN	FOCAL	6	"C17orf105,CD300LG,DUSP3,MEOX1,MPP3,SOST"
TCGA.AA.A010.01A	17	41957138	42084654	16	0.8788	LARGE-GAIN	FOCAL	4	"MPP2,NAGS,PPY,PYY"
TCGA.AG.3906.01A	17	42231872	42249366	6	1.1867	LARGE-GAIN	FOCAL	2	"ASB16,C17orf53"
TCGA.AG.3906.01A	17	42254011	42295467	25	1.9063	LARGE-GAIN	FOCAL	4	"ASB16,ATXN7L3,TMUB2,UBTF"
TCGA.AG.3906.01A	17	42327765	42386153	16	0.7994	LARGE-GAIN	FOCAL	2	"RUNDC3A,SLC4A1"
TCGA.AG.A016.01A	17	42339963	42429336	16	0.8909	LARGE-GAIN	FOCAL	4	"GRN,RUNDC3A,SLC25A39,SLC4A1"
TCGA.AG.3906.01A	17	42390441	42449685	14	1.5621	LARGE-GAIN	FOCAL	5	"FAM171A2,GRN,ITGA2B,RUNDC3A,SLC25A39"
TCGA.AF.3914.01A	17	42449685	42455043	6	0.7834	LARGE-GAIN	FOCAL	1	ITGA2B
TCGA.AA.3517	17	42624403	42848093	52	0.9701	LARGE-GAIN	FOCAL	5	"ADAM11,C17orf104,CCDC43,DBF4B,FZD2"
TCGA.AA.A00N.01A	17	42766871	42809490	7	0.7856	LARGE-GAIN	FOCAL	2	"CCDC43,DBF4B"
TCGA.AG.3909.01A	17	42786097	42827956	14	0.8519	LARGE-GAIN	FOCAL	1	DBF4B
TCGA.AG.3909.01A	17	42857015	42963911	31	0.73	LARGE-GAIN	FOCAL	4	"ADAM11,EFTUD2,GJC1,HIGD1B"
TCGA.AA.A010.01A	17	42971738	43011613	25	0.7372	LARGE-GAIN	FOCAL	4	"CCDC103,EFTUD2,GFAP,KIF18B"
TCGA.AG.4009.01A	17	42985378	42991042	7	0.8954	LARGE-GAIN	FOCAL	1	GFAP
TCGA.AG.3906.01A	17	43037508	43111508	5	1.3655	LARGE-GAIN	FOCAL	2	"C1QL1,DCAKD"
TCGA.CK.5914.01A	17	43138659	43176722	8	1.0559	LARGE-GAIN	FOCAL	1	NMT1
TCGA.AG.A016.01A	17	43307914	43323525	18	0.8543	LARGE-GAIN	FOCAL	1	FMNL1
TCGA.AG.3906.01A	17	43307914	43323836	18	1.9562	LARGE-GAIN	FOCAL	1	FMNL1
TCGA.AG.3891.01A	17	43310978	43332475	19	1.2359	LARGE-GAIN	FOCAL	2	"FMNL1,SPATA32"
TCGA.AG.A016.01A	17	43473340	43517474	10	0.9315	LARGE-GAIN	FOCAL	2	"ARHGAP27,PLEKHM1"
TCGA.AA.A00L.01A	17	43516796	44249094	37	1.0621	LARGE-GAIN	FOCAL	7	"CRHR1,KANSL1,MAPT,MGC57346-CRHR1,PLEKHM1,SPPL2C,STH"
TCGA.AA.3518	17	43781249	43793426	6	0.9824	LARGE-GAIN	FOCAL	1	MGC57346-CRHR1
TCGA.AA.A010.01A	17	43911031	44117061	28	0.9251	LARGE-GAIN	FOCAL	6	"CRHR1,KANSL1,MAPT,MGC57346-CRHR1,SPPL2C,STH"
TCGA.AA.3532	17	44157596	44352871	50	0.7142	LARGE-GAIN	FOCAL	1	KANSL1
TCGA.D5.6537	17	44162596	44280187	34	1.4049	LARGE-GAIN	FOCAL	1	KANSL1
TCGA.D5.6538	17	44162596	44352871	47	0.8557	LARGE-GAIN	FOCAL	1	KANSL1
TCGA.AA.3972	17	44165802	44353884	48	0.9165	LARGE-GAIN	FOCAL	1	KANSL1
TCGA.DM.A0XD	17	44165802	44353884	48	0.8893	LARGE-GAIN	FOCAL	1	KANSL1
TCGA.AA.3517	17	44222137	44819594	41	1.2672	LARGE-GAIN	FOCAL	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.AA.3956	17	44233775	44352871	29	1.1663	LARGE-GAIN	FOCAL	1	KANSL1
TCGA.AA.3861.01A	17	44374718	44788302	23	1.6932	LARGE-GAIN	FOCAL	5	"ARL17A,ARL17B,LRRC37A,LRRC37A2,NSF"
TCGA.AA.3862.01A	17	44408764	44788302	14	1.967	LARGE-GAIN	FOCAL	5	"ARL17A,ARL17B,LRRC37A,LRRC37A2,NSF"
TCGA.AA.A00A.01A	17	45198265	45234231	12	0.7792	LARGE-GAIN	FOCAL	1	CDC27
TCGA.AA.A01Q.01A	17	45266429	45360692	9	0.6835	LARGE-GAIN	FOCAL	3	"CDC27,ITGB3,MYL4"
TCGA.AA.A00A.01A	17	45377817	45759669	46	0.7137	LARGE-GAIN	FOCAL	4	"EFCAB13,ITGB3,KPNB1,NPEPPS"
TCGA.AA.A00D.01A	17	45405633	45757822	41	0.9267	LARGE-GAIN	FOCAL	3	"EFCAB13,KPNB1,NPEPPS"
TCGA.AZ.4684.01A	17	45421506	45422325	2	1.4533	LARGE-GAIN	FOCAL	1	EFCAB13
TCGA.AA.3861.01A	17	45517759	45669780	11	1.7012	LARGE-GAIN	FOCAL	2	"EFCAB13,NPEPPS"
TCGA.AA.3862.01A	17	45517759	45669780	11	1.6595	LARGE-GAIN	FOCAL	2	"EFCAB13,NPEPPS"
TCGA.AA.3862.01A	17	45913659	46020624	17	0.8034	LARGE-GAIN	FOCAL	5	"LRRC46,PNPO,SCRN2,SP2,SP6"
TCGA.AA.A010.01A	17	45918049	46058477	29	0.7956	LARGE-GAIN	FOCAL	6	"CDK5RAP3,PNPO,PRR15L,SCRN2,SP2,SP6"
TCGA.AG.4009.01A	17	45918049	46058477	26	0.6781	LARGE-GAIN	FOCAL	6	"CDK5RAP3,PNPO,PRR15L,SCRN2,SP2,SP6"
TCGA.AA.3861.01A	17	45992618	46020624	8	1.2827	LARGE-GAIN	FOCAL	2	"PNPO,SP2"
TCGA.CM.6166	17	46335578	46352462	8	1.0094	LARGE-GAIN	FOCAL	1	SKAP1
TCGA.AG.3906.01A	17	46607643	46700245	17	1.2098	LARGE-GAIN	FOCAL	9	"HOXB1,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9"
TCGA.AA.A00L.01A	17	46709800	47126659	63	1.0723	LARGE-GAIN	FOCAL	10	"ATP5G1,CALCOCO2,GIP,HOXB13,IGF2BP1,PRAC1,PRAC2,SNF8,TTLL6,UBE2Z"
TCGA.AA.A00A.01A	17	46867246	46939551	14	0.9802	LARGE-GAIN	FOCAL	2	"CALCOCO2,TTLL6"
TCGA.AG.A016.01A	17	47021223	47021968	2	1.3837	LARGE-GAIN	FOCAL	1	SNF8
TCGA.AG.4009.01A	17	47021968	47126659	20	0.6807	LARGE-GAIN	FOCAL	3	"GIP,IGF2BP1,SNF8"
TCGA.AA.A00L.01A	17	47210381	47700035	49	0.7262	LARGE-GAIN	FOCAL	9	"ABI3,B4GALNT2,GNGT2,NGFR,NXPH3,PHB,PHOSPHO1,SPOP,ZNF652"
TCGA.AG.3906.01A	17	47218562	47241402	6	1.1408	LARGE-GAIN	FOCAL	1	B4GALNT2
TCGA.AA.A010.01A	17	47696352	47882680	24	0.7791	LARGE-GAIN	FOCAL	4	"FAM117A,KAT7,SLC35B1,SPOP"
TCGA.AG.4009.01A	17	47778750	47799811	15	0.7813	LARGE-GAIN	FOCAL	2	"FAM117A,SLC35B1"
TCGA.AA.A00L.01A	17	47778750	47904711	31	1.1601	LARGE-GAIN	FOCAL	3	"FAM117A,KAT7,SLC35B1"
TCGA.CK.5914.01A	17	47788587	47866104	8	0.7442	LARGE-GAIN	FOCAL	2	"FAM117A,KAT7"
TCGA.AA.A024.01A	17	47794848	47797641	3	2.3889	LARGE-GAIN	FOCAL	1	FAM117A
TCGA.AG.3906.01A	17	48046803	48068870	4	1.5216	LARGE-GAIN	FOCAL	2	"DLX3,DLX4"
TCGA.AG.3906.01A	17	48072041	48216555	36	0.6895	LARGE-GAIN	FOCAL	5	"DLX3,ITGA3,PDK2,PPP1R9B,SAMD14"
TCGA.AG.A016.01A	17	48166432	48212625	14	0.7583	LARGE-GAIN	FOCAL	4	"ITGA3,PDK2,PPP1R9B,SAMD14"
TCGA.AG.4009.01A	17	48262816	48275507	18	0.694	LARGE-GAIN	FOCAL	1	COL1A1
TCGA.AG.4009.01A	17	48275753	48278731	4	1.065	LARGE-GAIN	FOCAL	1	COL1A1
TCGA.AG.3906.01A	17	48430943	48450423	13	1.0676	LARGE-GAIN	FOCAL	2	"MRPL27,XYLT2"
TCGA.AA.A00D.01A	17	48560659	48600921	14	0.8846	LARGE-GAIN	FOCAL	2	"MYCBPAP,RSAD1"
TCGA.AG.A016.01A	17	48655589	48683207	10	0.9317	LARGE-GAIN	FOCAL	1	CACNA1G
TCGA.AA.A00N.01A	17	48701241	48764850	29	0.6875	LARGE-GAIN	FOCAL	2	"ABCC3,CACNA1G"
TCGA.AG.3909.01A	17	48733156	48764850	25	0.8718	LARGE-GAIN	FOCAL	1	ABCC3
TCGA.CK.5914.01A	17	48784833	48827814	11	0.7231	LARGE-GAIN	FOCAL	2	"ANKRD40,LUC7L3"
TCGA.AA.A00D.01A	17	48817595	48827814	8	1.1125	LARGE-GAIN	FOCAL	1	LUC7L3
TCGA.AA.A00Q.01A	17	48817595	48827814	8	0.9957	LARGE-GAIN	FOCAL	1	LUC7L3
TCGA.AA.3854	17	49051278	49848769	240	0.7611	LARGE-GAIN	FOCAL	7	"CA10,MBTD1,NME1,NME1-NME2,NME2,SPAG9,UTP18"
TCGA.D5.6537	17	51084542	51189762	29	0.7697	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3517	17	51111509	52355509	320	1.0371	LARGE-GAIN	FOCAL	1	KIF2B
TCGA.D5.6537	17	51190007	51305544	24	1.0189	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	17	53797985	54559677	24	0.7938	LARGE-GAIN	FOCAL	3	"ANKFN1,PCTP,TMEM100"
TCGA.AD.6890	17	54163046	54172590	11	0.7784	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3556	17	54164095	54165028	5	1.4987	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	17	54428138	54517661	5	0.9601	LARGE-GAIN	FOCAL	1	ANKFN1
TCGA.AZ.4684.01A	17	54428138	54517661	5	0.9625	LARGE-GAIN	FOCAL	1	ANKFN1
TCGA.AA.3517	17	54744116	54854248	72	1.0461	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	17	54778619	54779480	5	1.3089	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	17	55478685	55754282	9	0.7209	LARGE-GAIN	FOCAL	1	MSI2
TCGA.DM.A1HB	17	55698232	55728762	17	1.1622	LARGE-GAIN	FOCAL	1	MSI2
TCGA.AG.3594	17	55889625	55899515	4	1.3417	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	17	55946422	56060102	11	1.3332	LARGE-GAIN	FOCAL	2	"CUEDC1,VEZF1"
TCGA.AA.A01Z	17	55968336	55994223	9	1.51	LARGE-GAIN	FOCAL	1	CUEDC1
TCGA.AA.A00N.01A	17	56270167	56277544	8	1.2053	LARGE-GAIN	FOCAL	1	EPX
TCGA.AG.3906.01A	17	56385943	56403612	15	0.7988	LARGE-GAIN	FOCAL	1	BZRAP1
TCGA.AA.3517	17	56431452	56485357	13	1.261	LARGE-GAIN	FOCAL	1	RNF43
TCGA.AG.3906.01A	17	56557357	56569820	3	1.7452	LARGE-GAIN	FOCAL	2	"HSF5,MTMR4"
TCGA.AG.3906.01A	17	56570152	56635089	29	0.8623	LARGE-GAIN	FOCAL	4	"C17orf47,MTMR4,SEPT4,TEX14"
TCGA.AA.A00L.01A	17	56619938	57350965	100	1.1178	LARGE-GAIN	FOCAL	9	"C17orf47,GDPD1,PPM1E,PRR11,RAD51C,SKA2,SMG8,TEX14,TRIM37"
TCGA.AG.3909.01A	17	56656961	56769986	23	0.7214	LARGE-GAIN	FOCAL	2	"RAD51C,TEX14"
TCGA.CA.5254	17	56840586	57159989	14	1.4757	LARGE-GAIN	FOCAL	2	"PPM1E,TRIM37"
TCGA.AG.3906.01A	17	57247072	57278907	8	0.7756	LARGE-GAIN	FOCAL	1	PRR11
TCGA.AA.A00L.01A	17	57430722	57643002	5	0.8075	LARGE-GAIN	FOCAL	2	"DHX40,YPEL2"
TCGA.AA.3861.01A	17	57643940	57676696	11	1.8173	LARGE-GAIN	FOCAL	1	DHX40
TCGA.AA.3862.01A	17	57643940	57676696	11	1.7952	LARGE-GAIN	FOCAL	1	DHX40
TCGA.AA.A00L.01A	17	57643940	57684342	11	1.465	LARGE-GAIN	FOCAL	1	DHX40
TCGA.AZ.4684.01A	17	57750970	57760738	9	0.7247	LARGE-GAIN	FOCAL	1	CLTC
TCGA.AA.3994	17	57918369	57938498	5	2.2086	LARGE-GAIN	FOCAL	1	TUBD1
TCGA.AA.A00A.01A	17	57987871	58008956	6	1.1295	LARGE-GAIN	FOCAL	1	RPS6KB1
TCGA.AA.3861.01A	17	58003744	58041906	20	1.4834	LARGE-GAIN	FOCAL	2	"RNFT1,RPS6KB1"
TCGA.AA.3862.01A	17	58003744	58120884	21	1.0984	LARGE-GAIN	FOCAL	3	"HEATR6,RNFT1,RPS6KB1"
TCGA.CK.5914.01A	17	58236544	58289336	17	1.0845	LARGE-GAIN	FOCAL	2	"CA4,USP32"
TCGA.AA.3861.01A	17	58282761	58296979	11	1.7711	LARGE-GAIN	FOCAL	1	USP32
TCGA.AA.3862.01A	17	58282761	58296979	11	1.9403	LARGE-GAIN	FOCAL	1	USP32
TCGA.AF.2689	17	58343818	59114553	89	1.2076	LARGE-GAIN	FOCAL	5	"APPBP2,BCAS3,C17orf64,PPM1D,USP32"
TCGA.AA.A010.01A	17	58422800	58506684	6	1.2909	LARGE-GAIN	FOCAL	2	"C17orf64,USP32"
TCGA.AA.3517	17	58430296	58641117	41	1.0146	LARGE-GAIN	FOCAL	3	"APPBP2,C17orf64,USP32"
TCGA.AA.A02O	17	58584479	59114553	60	1.8175	LARGE-GAIN	FOCAL	3	"APPBP2,BCAS3,PPM1D"
TCGA.CA.5254	17	58634809	59704934	200	1.2812	LARGE-GAIN	FOCAL	6	"BCAS3,C17orf82,NACA2,PPM1D,TBX2,TBX4"
TCGA.A6.3808.01A	17	58786543	59445640	20	1.0302	LARGE-GAIN	FOCAL	1	BCAS3
TCGA.AM.5820	17	59471371	59492713	6	1.1411	LARGE-GAIN	FOCAL	2	"C17orf82,TBX2"
TCGA.AA.A00L.01A	17	59489349	60002275	32	0.8745	LARGE-GAIN	FOCAL	5	"BRIP1,C17orf82,INTS2,NACA2,TBX4"
TCGA.AA.A00N.01A	17	59557198	59947091	26	0.8021	LARGE-GAIN	FOCAL	4	"BRIP1,INTS2,NACA2,TBX4"
TCGA.CA.5254	17	59719808	60492145	98	0.8925	LARGE-GAIN	FOCAL	4	"BRIP1,EFCAB3,INTS2,MED13"
TCGA.A6.3808.01A	17	59870920	59926443	6	2.375	LARGE-GAIN	FOCAL	1	BRIP1
TCGA.AA.3509.01A	17	59870920	59947091	12	0.9223	LARGE-GAIN	FOCAL	2	"BRIP1,INTS2"
TCGA.AZ.4684.01A	17	59870920	59947091	12	0.9041	LARGE-GAIN	FOCAL	2	"BRIP1,INTS2"
TCGA.AA.A00L.01A	17	60460273	60493327	9	1.3046	LARGE-GAIN	FOCAL	1	EFCAB3
TCGA.AA.A00L.01A	17	60558428	60685380	17	1.2467	LARGE-GAIN	FOCAL	1	TLK2
TCGA.AA.3862.01A	17	60599499	60654004	10	2.1035	LARGE-GAIN	FOCAL	1	TLK2
TCGA.AA.3517	17	60896262	60943288	10	1.3286	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3517	17	60948763	60968169	4	2.0402	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3517	17	60969505	61724694	96	1.097	LARGE-GAIN	FOCAL	7	"ACE,CYB561,DCAF7,KCNH6,MAP3K3,TACO1,TANC2"
TCGA.AA.A00N.01A	17	61086878	61490848	22	0.7432	LARGE-GAIN	FOCAL	1	TANC2
TCGA.CK.5914.01A	17	61465949	61495621	11	0.8775	LARGE-GAIN	FOCAL	1	TANC2
TCGA.AG.3906.01A	17	61557646	61564293	10	1.1278	LARGE-GAIN	FOCAL	1	ACE
TCGA.AA.A00A.01A	17	61678406	61735117	10	0.799	LARGE-GAIN	FOCAL	2	"MAP3K3,TACO1"
TCGA.AA.A00L.01A	17	61678406	61744248	11	1.124	LARGE-GAIN	FOCAL	2	"MAP3K3,TACO1"
TCGA.AA.A00D.01A	17	61681872	61735117	9	0.8832	LARGE-GAIN	FOCAL	2	"MAP3K3,TACO1"
TCGA.AG.3906.01A	17	61683624	61805612	30	1.0709	LARGE-GAIN	FOCAL	4	"LIMD2,MAP3K3,STRADA,TACO1"
TCGA.AA.A00D.01A	17	61780947	61894191	37	0.7403	LARGE-GAIN	FOCAL	3	"CCDC47,DDX42,STRADA"
TCGA.AA.A00A.01A	17	61783943	61895006	36	0.7062	LARGE-GAIN	FOCAL	3	"CCDC47,DDX42,STRADA"
TCGA.AA.A00L.01A	17	61791329	61895006	32	1.1993	LARGE-GAIN	FOCAL	3	"CCDC47,DDX42,STRADA"
TCGA.AA.A00L.01A	17	61897190	62009487	41	0.8516	LARGE-GAIN	FOCAL	9	"CD79B,CSH1,CSH2,CSHL1,FTSJ3,GH1,GH2,PSMC5,SMARCD2"
TCGA.AA.A00N.01A	17	61959060	61996041	12	1.1775	LARGE-GAIN	FOCAL	4	"CSH1,CSHL1,GH1,GH2"
TCGA.CK.5914.01A	17	61972354	62006539	12	1.4574	LARGE-GAIN	FOCAL	4	"CD79B,CSH1,CSHL1,GH1"
TCGA.AG.3909.01A	17	61972354	62009487	16	0.9754	LARGE-GAIN	FOCAL	4	"CD79B,CSH1,CSHL1,GH1"
TCGA.CA.5254	17	62144343	62662506	113	0.7681	LARGE-GAIN	FOCAL	8	"CEP95,DDX5,ERN1,MILR1,PECAM1,POLG2,SMURF2,TEX2"
TCGA.AA.A010.01A	17	62500746	62503128	3	1.782	LARGE-GAIN	FOCAL	1	DDX5
TCGA.AA.3968	17	62659888	62755822	13	0.7619	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	17	62891004	62893320	4	0.8488	LARGE-GAIN	FOCAL	1	LRRC37A3
TCGA.CA.5254	17	63068975	65032892	740	0.7892	LARGE-GAIN	FOCAL	7	"APOH,AXIN2,CACNG4,CACNG5,CEP112,PRKCA,RGS9"
TCGA.AA.A00N.01A	17	63164302	63223346	12	0.7731	LARGE-GAIN	FOCAL	1	RGS9
TCGA.AA.A010.01A	17	63164302	63223346	12	0.763	LARGE-GAIN	FOCAL	1	RGS9
TCGA.AA.A01Z	17	63372319	63681169	106	1.7987	LARGE-GAIN	FOCAL	2	"AXIN2,CEP112"
TCGA.A6.6652	17	63623939	63689868	30	1.0089	LARGE-GAIN	FOCAL	1	CEP112
TCGA.AA.3517	17	63950125	64448270	154	1.0207	LARGE-GAIN	FOCAL	3	"APOH,CEP112,PRKCA"
TCGA.AA.A00L.01A	17	64092327	64225367	15	1.1965	LARGE-GAIN	FOCAL	2	"APOH,CEP112"
TCGA.AG.A01W.01A	17	64632576	64643791	6	0.6921	LARGE-GAIN	FOCAL	1	PRKCA
TCGA.AA.A00L.01A	17	64683202	64770054	9	1.3377	LARGE-GAIN	FOCAL	1	PRKCA
TCGA.AA.A00L.01A	17	64782935	64876622	6	0.9687	LARGE-GAIN	FOCAL	2	"CACNG5,PRKCA"
TCGA.AG.A01W.01A	17	64810418	64816948	5	0.7202	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3556	17	64821305	64826048	3	1.961	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3575	17	64821305	64826048	3	1.5675	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	17	64890986	64939058	28	0.9644	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00L.01A	17	65336917	66303598	74	1.1689	LARGE-GAIN	FOCAL	9	"AMZ2,ARSG,BPTF,C17orf58,KPNA2,NOL11,PITPNC1,PSMD12,SLC16A6"
TCGA.AA.3517	17	65455868	65688390	73	1.1203	LARGE-GAIN	FOCAL	1	PITPNC1
TCGA.AA.3517	17	65692984	65892063	39	1.3866	LARGE-GAIN	FOCAL	3	"BPTF,NOL11,PITPNC1"
TCGA.AA.3862.01A	17	65862598	66265200	44	0.7817	LARGE-GAIN	FOCAL	6	"AMZ2,ARSG,BPTF,C17orf58,KPNA2,SLC16A6"
TCGA.AA.3517	17	65892904	66015962	15	1.0233	LARGE-GAIN	FOCAL	2	"BPTF,C17orf58"
TCGA.AA.A00D.01A	17	65971839	66303598	19	1.0069	LARGE-GAIN	FOCAL	6	"AMZ2,ARSG,BPTF,C17orf58,KPNA2,SLC16A6"
TCGA.CK.5914.01A	17	66339726	66416311	10	0.8114	LARGE-GAIN	FOCAL	2	"ARSG,PRKAR1A"
TCGA.AA.A00N.01A	17	66339726	66432481	20	0.704	LARGE-GAIN	FOCAL	3	"ARSG,PRKAR1A,WIPI1"
TCGA.CA.5254	17	66352355	66539434	74	1.9297	LARGE-GAIN	FOCAL	4	"ARSG,FAM20A,PRKAR1A,WIPI1"
TCGA.AA.A00D.01A	17	66511499	66526024	8	1.0579	LARGE-GAIN	FOCAL	1	PRKAR1A
TCGA.AA.A00N.01A	17	66533569	67085548	93	0.889	LARGE-GAIN	FOCAL	5	"ABCA6,ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.AA.A02H.01A	17	66871399	66873629	4	0.9813	LARGE-GAIN	FOCAL	1	ABCA8
TCGA.AA.A01Q.01A	17	66980156	66982253	3	1.1158	LARGE-GAIN	FOCAL	1	ABCA9
TCGA.AA.A02H.01A	17	67008079	67081715	29	0.8458	LARGE-GAIN	FOCAL	2	"ABCA6,ABCA9"
TCGA.AG.A023.01A	17	67012347	67181571	74	0.7825	LARGE-GAIN	FOCAL	3	"ABCA10,ABCA6,ABCA9"
TCGA.AA.A02H.01A	17	67092349	67125733	19	0.784	LARGE-GAIN	FOCAL	1	ABCA6
TCGA.AA.A01C.01A	17	67092349	67129733	20	0.8864	LARGE-GAIN	FOCAL	1	ABCA6
TCGA.CK.5914.01A	17	67101592	67170375	32	0.6967	LARGE-GAIN	FOCAL	2	"ABCA10,ABCA6"
TCGA.AA.A00N.01A	17	67129733	67171497	20	0.9801	LARGE-GAIN	FOCAL	2	"ABCA10,ABCA6"
TCGA.DM.A28M.01A	17	67151895	67183795	11	1.3506	LARGE-GAIN	FOCAL	1	ABCA10
TCGA.AA.A00D.01A	17	67160164	67217886	23	0.7319	LARGE-GAIN	FOCAL	1	ABCA10
TCGA.AA.A00N.01A	17	67245994	67283702	21	1.0017	LARGE-GAIN	FOCAL	1	ABCA5
TCGA.AG.A023.01A	17	67245994	67304369	31	0.7652	LARGE-GAIN	FOCAL	1	ABCA5
TCGA.AA.3509.01A	17	67256419	67257726	3	2.3514	LARGE-GAIN	FOCAL	1	ABCA5
TCGA.AZ.4684.01A	17	67256419	67257726	3	2.5911	LARGE-GAIN	FOCAL	1	ABCA5
TCGA.AA.A02H.01A	17	67287340	67309191	10	0.7786	LARGE-GAIN	FOCAL	1	ABCA5
TCGA.AG.A016.01A	17	67287340	67411036	12	0.6936	LARGE-GAIN	FOCAL	2	"ABCA5,MAP2K6"
TCGA.AA.A00D.01A	17	67293290	67513603	13	0.7454	LARGE-GAIN	FOCAL	2	"ABCA5,MAP2K6"
TCGA.AA.A00N.01A	17	67411036	68131187	14	0.6833	LARGE-GAIN	FOCAL	2	"KCNJ16,MAP2K6"
TCGA.CA.5254	17	67666700	67715213	8	1.9409	LARGE-GAIN	FOCAL	0	None
TCGA.CA.5254	17	67718093	68144095	132	1.4023	LARGE-GAIN	FOCAL	1	KCNJ16
TCGA.AA.A01Z	17	68688982	68728237	20	0.9793	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01Z	17	68737417	69196262	205	0.8229	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	17	70117514	70644902	5	1.1947	LARGE-GAIN	FOCAL	2	"SLC39A11,SOX9"
TCGA.AA.3556	17	70295601	70296264	4	2.5895	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3556	17	70297362	71197438	415	0.7301	LARGE-GAIN	FOCAL	3	"COG1,SLC39A11,SSTR2"
TCGA.AA.A00N.01A	17	70644902	71084744	8	0.9279	LARGE-GAIN	FOCAL	1	SLC39A11
TCGA.AG.3909.01A	17	70644902	71084744	8	0.9472	LARGE-GAIN	FOCAL	1	SLC39A11
TCGA.AG.3906.01A	17	71192598	71204416	11	1.1722	LARGE-GAIN	FOCAL	2	"COG1,FAM104A"
TCGA.AA.A00D.01A	17	71195956	71243358	18	0.7437	LARGE-GAIN	FOCAL	3	"C17orf80,COG1,FAM104A"
TCGA.AA.A010.01A	17	71228173	71503560	58	0.727	LARGE-GAIN	FOCAL	5	"C17orf80,CDC42EP4,CPSF4L,FAM104A,SDK2"
TCGA.AG.3906.01A	17	71243358	71379963	13	0.7126	LARGE-GAIN	FOCAL	4	"C17orf80,CDC42EP4,CPSF4L,SDK2"
TCGA.AA.A00N.01A	17	71247100	72308095	78	0.75	LARGE-GAIN	FOCAL	7	"CDC42EP4,CPSF4L,DNAI2,LOC100134391,RPL38,SDK2,TTYH2"
TCGA.AG.3906.01A	17	72199997	72226980	4	1.3915	LARGE-GAIN	FOCAL	2	"RPL38,TTYH2"
TCGA.CK.5914.01A	17	72462762	72691816	28	0.6781	LARGE-GAIN	FOCAL	8	"C17orf77,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,RAB37"
TCGA.AA.A010.01A	17	72462762	72708898	33	0.6878	LARGE-GAIN	FOCAL	8	"C17orf77,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,RAB37"
TCGA.AA.A00N.01A	17	72462762	72733102	35	0.8249	LARGE-GAIN	FOCAL	8	"C17orf77,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,RAB37"
TCGA.AG.3909.01A	17	72469635	72708898	30	0.8923	LARGE-GAIN	FOCAL	8	"C17orf77,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,RAB37"
TCGA.AG.4009.01A	17	72771713	72815834	9	0.7195	LARGE-GAIN	FOCAL	2	"NAT9,TMEM104"
TCGA.AG.3906.01A	17	72832028	72888599	16	1.3053	LARGE-GAIN	FOCAL	4	"FADS6,FDXR,GRIN2C,TMEM104"
TCGA.AG.A01W.01A	17	72995065	73006154	8	0.9123	LARGE-GAIN	FOCAL	1	CDR2L
TCGA.AG.3891.01A	17	73013093	73059026	14	0.8277	LARGE-GAIN	FOCAL	3	"ATP5H,ICT1,KCTD2"
TCGA.AG.3906.01A	17	73016969	73058168	9	1.3894	LARGE-GAIN	FOCAL	3	"ATP5H,ICT1,KCTD2"
TCGA.AG.3906.01A	17	73258531	73274185	11	1.4886	LARGE-GAIN	FOCAL	3	"MIF4GD,MRPS7,SLC25A19"
TCGA.AG.3906.01A	17	73279455	73486263	16	0.7342	LARGE-GAIN	FOCAL	3	"GRB2,KIAA0195,SLC25A19"
TCGA.AG.3906.01A	17	73502634	73552080	10	0.878	LARGE-GAIN	FOCAL	3	"CASKIN2,LLGL2,TSEN54"
TCGA.AG.A01W.01A	17	73625440	73641480	14	0.7202	LARGE-GAIN	FOCAL	2	"RECQL5,SMIM5"
TCGA.AA.A00L.01A	17	73647202	73700764	16	1.0911	LARGE-GAIN	FOCAL	2	"RECQL5,SAP30BP"
TCGA.CK.5914.01A	17	73654346	73667832	9	0.7231	LARGE-GAIN	FOCAL	2	"RECQL5,SAP30BP"
TCGA.AA.A00L.01A	17	73838472	73847602	10	1.0757	LARGE-GAIN	FOCAL	2	"UNC13D,WBP2"
TCGA.AG.3906.01A	17	73870543	73915701	12	0.9295	LARGE-GAIN	FOCAL	4	"FBF1,MRPL38,TRIM47,TRIM65"
TCGA.AA.A00A.01A	17	73942754	73969669	11	1.0156	LARGE-GAIN	FOCAL	1	ACOX1
TCGA.AA.A00L.01A	17	73942754	74007647	20	1.0469	LARGE-GAIN	FOCAL	4	"ACOX1,CDK3,EVPL,TEN1"
TCGA.AA.A00L.01A	17	74035776	74066394	15	1.1924	LARGE-GAIN	FOCAL	1	SRP68
TCGA.AA.3930.01A	17	74472902	74473255	2	3.1824	LARGE-GAIN	FOCAL	1	RHBDF2
TCGA.AA.3517	17	74798373	74958383	57	1.3552	LARGE-GAIN	FOCAL	1	MGAT5B
TCGA.AY.4070	17	75659018	75720302	35	2.7963	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	17	76134125	76354478	20	0.8009	LARGE-GAIN	FOCAL	8	"AFMID,BIRC5,C17orf99,SOCS3,SYNGR2,TK1,TMC8,TMEM235"
TCGA.AA.3975	17	76147819	76388201	52	0.8294	LARGE-GAIN	FOCAL	8	"AFMID,BIRC5,C17orf99,PGS1,SOCS3,SYNGR2,TK1,TMEM235"
TCGA.AA.A00A.01A	17	76178637	76200729	7	0.901	LARGE-GAIN	FOCAL	2	"AFMID,TK1"
TCGA.AA.A00L.01A	17	76178637	76202952	11	1.2032	LARGE-GAIN	FOCAL	2	"AFMID,TK1"
TCGA.AA.A00L.01A	17	76210356	76969054	82	0.8615	LARGE-GAIN	FOCAL	10	"BIRC5,CEP295NL,CYTH1,DNAH17,LGALS3BP,PGS1,SOCS3,TIMP2,TMEM235,USP36"
TCGA.AA.3930.01A	17	76445448	76446284	2	2.2483	LARGE-GAIN	FOCAL	1	DNAH17
TCGA.AA.3517	17	76901464	77047974	43	1.2812	LARGE-GAIN	FOCAL	4	"C1QTNF1,CANT1,LGALS3BP,TIMP2"
TCGA.AA.3695	17	77245659	77246389	3	1.4293	LARGE-GAIN	FOCAL	1	RBFOX3
TCGA.DM.A1HB	17	77366788	77389100	13	0.7676	LARGE-GAIN	FOCAL	1	RBFOX3
TCGA.AG.A01W.01A	17	77410330	77466546	23	0.7871	LARGE-GAIN	FOCAL	1	RBFOX3
TCGA.AA.3517	17	77489074	77846932	46	1.1289	LARGE-GAIN	FOCAL	5	"CBX2,CBX4,CBX8,ENPP7,RBFOX3"
TCGA.AG.A01W.01A	17	77576498	77652802	39	0.7333	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	17	77755504	77807711	6	1.5597	LARGE-GAIN	FOCAL	3	"CBX2,CBX4,CBX8"
TCGA.AA.3862.01A	17	78032279	78069044	10	1.1377	LARGE-GAIN	FOCAL	1	CCDC40
TCGA.AA.A00L.01A	17	78091942	78829209	125	0.9385	LARGE-GAIN	FOCAL	9	"CARD14,EIF4A3,ENDOV,GAA,NPTX1,RNF213,RPTOR,SGSH,SLC26A11"
TCGA.AG.4009.01A	17	78156424	78175938	12	0.8273	LARGE-GAIN	FOCAL	1	CARD14
TCGA.AA.3930.01A	17	78163503	78165075	3	2.2351	LARGE-GAIN	FOCAL	1	CARD14
TCGA.A6.3808.01A	17	78195341	78222916	14	0.8387	LARGE-GAIN	FOCAL	1	SLC26A11
TCGA.AG.3909.01A	17	78218929	78237433	8	0.7437	LARGE-GAIN	FOCAL	2	"RNF213,SLC26A11"
TCGA.AA.3939.01A	17	78246988	78317605	18	0.7642	LARGE-GAIN	FOCAL	1	RNF213
TCGA.AA.A010.01A	17	78313907	78346733	26	0.7779	LARGE-GAIN	FOCAL	1	RNF213
TCGA.AA.A010.01A	17	78388922	78389402	2	1.3121	LARGE-GAIN	FOCAL	1	ENDOV
TCGA.AG.3906.01A	17	78865483	78882559	4	1.3699	LARGE-GAIN	FOCAL	1	RPTOR
TCGA.DT.5265	17	78872952	78877734	3	1.6362	LARGE-GAIN	FOCAL	1	RPTOR
TCGA.AY.A8YK	17	78929019	79131912	32	1.0605	LARGE-GAIN	FOCAL	4	"AATK,BAIAP2,CHMP6,RPTOR"
TCGA.A6.3808.01A	17	79175993	79193643	6	1.0143	LARGE-GAIN	FOCAL	1	CEP131
TCGA.AA.A00L.01A	17	79244671	79268585	10	1.0899	LARGE-GAIN	FOCAL	1	SLC38A10
TCGA.AG.3906.01A	17	79673886	79801830	5	0.9252	LARGE-GAIN	FOCAL	6	"FAM195B,GCGR,MRPL12,P4HB,PPP1R27,SLC25A10"
TCGA.AG.3891.01A	17	79804786	79848514	8	0.965	LARGE-GAIN	FOCAL	3	"ALYREF,ARHGDIA,P4HB"
TCGA.AM.5821	17	80004049	80058856	7	0.9967	LARGE-GAIN	FOCAL	4	"DUS1L,FASN,GPS1,RFNG"
TCGA.AY.A8YK	17	80394529	80438245	10	1.1817	LARGE-GAIN	FOCAL	3	"C17orf62,HEXDC,NARF"
TCGA.AD.6890	17	80744372	80762838	3	1.3819	LARGE-GAIN	FOCAL	1	TBCD
TCGA.AA.A010.01A	18	259131	357384	14	1.0518	LARGE-GAIN	FOCAL	2	"COLEC12,THOC1"
TCGA.AA.A01C.01A	18	688492	690988	3	1.0284	LARGE-GAIN	FOCAL	1	ENOSF1
TCGA.AA.A00N.01A	18	2726385	2772231	20	0.8653	LARGE-GAIN	FOCAL	1	SMCHD1
TCGA.AA.A010.01A	18	3447665	5196946	20	0.9307	LARGE-GAIN	FOCAL	3	"C18orf42,DLGAP1,TGIF1"
TCGA.AA.A00N.01A	18	3534165	3845158	8	0.9099	LARGE-GAIN	FOCAL	1	DLGAP1
TCGA.AA.A00N.01A	18	5394635	5433864	16	1.2789	LARGE-GAIN	FOCAL	1	EPB41L3
TCGA.AA.A010.01A	18	5394635	5445092	19	0.8757	LARGE-GAIN	FOCAL	1	EPB41L3
TCGA.AA.A00N.01A	18	6947125	8296310	82	0.7293	LARGE-GAIN	FOCAL	3	"LAMA1,LRRC30,PTPRM"
TCGA.AA.A010.01A	18	6974855	7042107	37	0.9148	LARGE-GAIN	FOCAL	1	LAMA1
TCGA.AA.A010.01A	18	8343384	8406032	11	0.8197	LARGE-GAIN	FOCAL	1	PTPRM
TCGA.AG.3728	18	8582178	8585335	5	1.1431	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	18	8777764	9104868	16	0.8205	LARGE-GAIN	FOCAL	2	"MTCL1,NDUFV2"
TCGA.AZ.4684.01A	18	9104119	9263751	19	0.7325	LARGE-GAIN	FOCAL	2	"ANKRD12,NDUFV2"
TCGA.DM.A28K	18	9661210	9695355	12	1.0206	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	18	10471510	10487545	3	0.8592	LARGE-GAIN	FOCAL	1	APCDD1
TCGA.DT.5265	18	11327226	11329870	3	1.0653	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	18	12971125	12986850	6	0.7968	LARGE-GAIN	FOCAL	1	SEH1L
TCGA.DY.A1DF	18	14766637	15215870	42	1.0849	LARGE-GAIN	FOCAL	1	ANKRD30B
TCGA.AA.3862.01A	18	14799122	18539749	15	1.6973	LARGE-GAIN	FOCAL	2	"ANKRD30B,ROCK1"
TCGA.AA.3861.01A	18	14803715	18539749	14	2.1806	LARGE-GAIN	FOCAL	2	"ANKRD30B,ROCK1"
TCGA.AA.3509.01A	18	14848736	14851521	3	1.6543	LARGE-GAIN	FOCAL	1	ANKRD30B
TCGA.AZ.4684.01A	18	14848736	14851521	3	2.3733	LARGE-GAIN	FOCAL	1	ANKRD30B
TCGA.A6.3808.01A	18	18540031	19031993	38	0.8123	LARGE-GAIN	FOCAL	2	"GREB1L,ROCK1"
TCGA.NH.A50V	18	19234971	19708347	90	1.6735	LARGE-GAIN	FOCAL	2	"ABHD3,MIB1"
TCGA.A6.3808.01A	18	19284428	19433044	18	1.1509	LARGE-GAIN	FOCAL	2	"ABHD3,MIB1"
TCGA.A6.6649	18	19526601	20248797	226	0.8151	LARGE-GAIN	FOCAL	2	"CTAGE1,GATA6"
TCGA.D5.6927	18	20601507	20633686	4	1.1264	LARGE-GAIN	FOCAL	1	RBBP8
TCGA.AA.A01Q.01A	18	21452969	21474824	7	0.8522	LARGE-GAIN	FOCAL	1	LAMA3
TCGA.AF.3914.01A	18	21484469	21644082	24	0.9243	LARGE-GAIN	FOCAL	2	"LAMA3,TTC39C"
TCGA.AA.3681	18	21781792	22074719	115	0.9309	LARGE-GAIN	FOCAL	3	"HRH4,IMPACT,OSBPL1A"
TCGA.NH.A50V	18	22691082	24098035	423	1.7971	LARGE-GAIN	FOCAL	5	"KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.A6.3808.01A	18	23612321	23619206	5	3.2023	LARGE-GAIN	FOCAL	1	SS18
TCGA.AA.A00L.01A	18	23724483	23772263	5	0.824	LARGE-GAIN	FOCAL	1	PSMA8
TCGA.D5.6922	18	23854691	23970579	17	0.7826	LARGE-GAIN	FOCAL	1	TAF4B
TCGA.AA.A00N.01A	18	24722606	27878805	18	1.0581	LARGE-GAIN	FOCAL	2	"CDH2,CHST9"
TCGA.CM.6676	18	25397531	25949732	160	0.8754	LARGE-GAIN	FOCAL	1	CDH2
TCGA.NH.A50V	18	26999886	27002270	3	1.3866	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3681	18	28571648	28852379	122	0.9169	LARGE-GAIN	FOCAL	3	"DSC1,DSC2,DSC3"
TCGA.AA.3681	18	28949900	29167904	99	0.8427	LARGE-GAIN	FOCAL	3	"DSG2,DSG3,DSG4"
TCGA.AA.A00N.01A	18	29784097	32720210	99	0.6872	LARGE-GAIN	FOCAL	8	"ASXL3,CCDC178,DTNA,GAREM,KLHL14,MAPRE2,MEP1B,NOL4"
TCGA.G4.6302	18	30409843	30447559	10	0.7507	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	18	33793282	34298157	26	0.7429	LARGE-GAIN	FOCAL	2	"FHOD3,MOCOS"
TCGA.DM.A28K	18	35818997	41069877	1620	1.0097	LARGE-GAIN	FOCAL	3	"PIK3C3,RIT2,SYT4"
TCGA.AA.A00N.01A	18	39584318	43319456	58	1.07	LARGE-GAIN	FOCAL	6	"PIK3C3,RIT2,SETBP1,SLC14A1,SLC14A2,SYT4"
TCGA.AA.3518	18	40658445	40667493	5	0.8374	LARGE-GAIN	FOCAL	1	RIT2
TCGA.CM.5348	18	40846808	42821456	617	0.7479	LARGE-GAIN	FOCAL	3	"SETBP1,SLC14A2,SYT4"
TCGA.AA.A00L.01A	18	43534328	43570634	4	0.9517	LARGE-GAIN	FOCAL	2	"EPG5,PSTPIP2"
TCGA.AA.A00D.01A	18	43664212	43685143	9	0.8091	LARGE-GAIN	FOCAL	2	"ATP5A1,HAUS1"
TCGA.AA.A00A.01A	18	43664212	43707970	16	0.8408	LARGE-GAIN	FOCAL	2	"ATP5A1,HAUS1"
TCGA.AA.A00L.01A	18	43664212	43707970	17	0.8423	LARGE-GAIN	FOCAL	2	"ATP5A1,HAUS1"
TCGA.A6.3808.01A	18	43819923	44426623	71	0.9925	LARGE-GAIN	FOCAL	5	"C18orf25,LOXHD1,PIAS2,RNF165,ST8SIA5"
TCGA.AZ.4684.01A	18	44398300	44426623	7	0.7475	LARGE-GAIN	FOCAL	1	PIAS2
TCGA.AG.A01L.01A	18	44542700	44548627	2	0.7296	LARGE-GAIN	FOCAL	3	"KATNAL2,TCEB3CL,TCEB3CL2"
TCGA.AA.A010.01A	18	46145906	46448101	14	0.7316	LARGE-GAIN	FOCAL	2	"CTIF,SMAD7"
TCGA.AG.3891.01A	18	46468798	46474684	2	0.8936	LARGE-GAIN	FOCAL	1	SMAD7
TCGA.AA.A010.01A	18	47013667	47017696	6	0.9881	LARGE-GAIN	FOCAL	2	"RPL17,RPL17-C18orf32"
TCGA.AA.A00N.01A	18	47421291	47581611	21	1.322	LARGE-GAIN	FOCAL	1	MYO5B
TCGA.AA.A00D.01A	18	47902148	47918422	6	0.7842	LARGE-GAIN	FOCAL	1	SKA1
TCGA.AA.A00L.01A	18	47902148	48473336	27	0.7439	LARGE-GAIN	FOCAL	4	"MAPK4,ME2,MRO,SKA1"
TCGA.AA.3664	18	48159562	48274404	59	1.0909	LARGE-GAIN	FOCAL	1	MAPK4
TCGA.AA.A00N.01A	18	49867104	51025620	27	0.9725	LARGE-GAIN	FOCAL	1	DCC
TCGA.AA.A00L.01A	18	55268852	55373680	37	0.737	LARGE-GAIN	FOCAL	3	"ATP8B1,LOC100505549,NARS"
TCGA.AA.A00N.01A	18	55983143	56010101	11	0.7478	LARGE-GAIN	FOCAL	1	NEDD4L
TCGA.AA.A00N.01A	18	56165208	56246859	10	0.8416	LARGE-GAIN	FOCAL	1	ALPK2
TCGA.AA.3861.01A	18	56585483	56651527	11	1.8932	LARGE-GAIN	FOCAL	1	ZNF532
TCGA.AA.3862.01A	18	56585483	56651527	11	1.6587	LARGE-GAIN	FOCAL	1	ZNF532
TCGA.AA.A00N.01A	18	56585483	56807128	12	0.8384	LARGE-GAIN	FOCAL	2	"SEC11C,ZNF532"
TCGA.CK.5914.01A	18	57115165	57136656	4	0.7672	LARGE-GAIN	FOCAL	1	CCBE1
TCGA.AU.6004	18	57629471	57634419	5	1.6334	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	18	59925134	59936080	5	0.9642	LARGE-GAIN	FOCAL	1	KIAA1468
TCGA.AA.3509.01A	18	59925134	59941166	6	0.7385	LARGE-GAIN	FOCAL	1	KIAA1468
TCGA.AA.A00N.01A	18	60497237	60795829	18	0.7222	LARGE-GAIN	FOCAL	2	"BCL2,PHLPP1"
TCGA.AA.A010.01A	18	61089378	61160139	5	1.021	LARGE-GAIN	FOCAL	2	"SERPINB5,VPS4B"
TCGA.AA.A00N.01A	18	61166305	61271104	20	0.779	LARGE-GAIN	FOCAL	3	"SERPINB12,SERPINB13,SERPINB5"
TCGA.AA.A017.01A	18	61306370	61310600	6	0.7036	LARGE-GAIN	FOCAL	1	SERPINB4
TCGA.AA.A010.01A	18	61449568	61465801	5	0.7806	LARGE-GAIN	FOCAL	1	SERPINB7
TCGA.AA.A00N.01A	18	63476913	64239200	21	0.7854	LARGE-GAIN	FOCAL	2	"CDH19,CDH7"
TCGA.CI.6621	18	74864186	74867447	3	1.8433	LARGE-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	19	308545	362152	11	1.0118	LARGE-GAIN	FOCAL	2	"MIER2,THEG"
TCGA.AG.3891.01A	19	610211	761548	17	0.7089	LARGE-GAIN	FOCAL	8	"FGF22,FSTL3,HCN2,MISP,PALM,POLRMT,PRSS57,RNF126"
TCGA.AA.A01Q.01A	19	1031042	1061731	24	0.8212	LARGE-GAIN	FOCAL	2	"ABCA7,CNN2"
TCGA.AA.3939.01A	19	1118970	1119468	2	3.1692	LARGE-GAIN	FOCAL	1	SBNO2
TCGA.AM.5820	19	1189539	1329638	9	0.7886	LARGE-GAIN	FOCAL	7	"ATP5D,C19orf24,C19orf26,CIRBP,EFNA2,MIDN,STK11"
TCGA.AG.3891.01A	19	1356347	1367088	8	1.038	LARGE-GAIN	FOCAL	1	MUM1
TCGA.AA.A00D.01A	19	1356347	1421108	20	0.8723	LARGE-GAIN	FOCAL	4	"DAZAP1,GAMT,MUM1,NDUFS7"
TCGA.AA.A024.01A	19	2043073	2043445	2	3.778	LARGE-GAIN	FOCAL	1	MKNK2
TCGA.AA.3858	19	2048597	2064618	4	1.528	LARGE-GAIN	FOCAL	1	MKNK2
TCGA.AG.A01W.01A	19	2288404	2296204	9	1.2772	LARGE-GAIN	FOCAL	1	LINGO3
TCGA.AM.5820	19	2760715	2823692	11	0.7188	LARGE-GAIN	FOCAL	3	"SGTA,THOP1,ZNF554"
TCGA.AA.A00D.01A	19	2794725	2936470	17	0.8557	LARGE-GAIN	FOCAL	6	"THOP1,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AA.A00L.01A	19	2851417	2993969	20	0.7248	LARGE-GAIN	FOCAL	5	"TLE6,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AM.5820	19	3005230	3123168	21	0.7109	LARGE-GAIN	FOCAL	3	"AES,GNA11,TLE2"
TCGA.AG.A01W.01A	19	3478581	3485727	7	0.9864	LARGE-GAIN	FOCAL	1	SMIM24
TCGA.AA.3861.01A	19	4199626	4222620	14	1.3558	LARGE-GAIN	FOCAL	1	ANKRD24
TCGA.AA.3862.01A	19	4199626	4222620	15	1.2894	LARGE-GAIN	FOCAL	1	ANKRD24
TCGA.AG.A01W.01A	19	4269813	4282949	8	0.8928	LARGE-GAIN	FOCAL	1	SHD
TCGA.AA.A00L.01A	19	4417945	4430526	7	1.1186	LARGE-GAIN	FOCAL	1	CHAF1A
TCGA.AA.A010.01A	19	4714074	4861287	12	0.8851	LARGE-GAIN	FOCAL	4	"DPP9,FEM1A,PLIN3,TICAM1"
TCGA.AG.4009.01A	19	4770681	4861287	10	0.8357	LARGE-GAIN	FOCAL	3	"FEM1A,PLIN3,TICAM1"
TCGA.AM.5820	19	5016618	5155307	26	0.8984	LARGE-GAIN	FOCAL	1	KDM4B
TCGA.AA.A00D.01A	19	5650950	5664330	7	1.2038	LARGE-GAIN	FOCAL	1	SAFB
TCGA.AG.3891.01A	19	5711734	5754102	16	0.9319	LARGE-GAIN	FOCAL	2	"CATSPERD,LONP1"
TCGA.CK.5914.01A	19	6039939	6187583	16	0.7529	LARGE-GAIN	FOCAL	2	"ACSBG2,RFX2"
TCGA.AG.3909.01A	19	6270573	6333415	6	1.0459	LARGE-GAIN	FOCAL	2	"ACER1,MLLT1"
TCGA.CK.5914.01A	19	6306703	6312139	4	1.0362	LARGE-GAIN	FOCAL	1	ACER1
TCGA.AA.A00N.01A	19	6306703	6333415	5	0.943	LARGE-GAIN	FOCAL	1	ACER1
TCGA.AG.3906.01A	19	6415139	6429684	8	0.923	LARGE-GAIN	FOCAL	2	"KHSRP,SLC25A41"
TCGA.AG.3909.01A	19	6427066	6453945	9	0.7814	LARGE-GAIN	FOCAL	2	"SLC25A23,SLC25A41"
TCGA.CK.5914.01A	19	6429684	6452271	7	1.0235	LARGE-GAIN	FOCAL	2	"SLC25A23,SLC25A41"
TCGA.AG.3891.01A	19	6465492	6479618	13	0.767	LARGE-GAIN	FOCAL	2	"CRB3,DENND1C"
TCGA.A6.3808.01A	19	6468237	6707761	46	0.9433	LARGE-GAIN	FOCAL	6	"C3,CD70,DENND1C,TNFSF14,TNFSF9,TUBB4A"
TCGA.AG.4009.01A	19	6590820	6709658	25	0.7891	LARGE-GAIN	FOCAL	3	"C3,CD70,TNFSF14"
TCGA.AA.A00L.01A	19	6680122	6692898	8	0.8505	LARGE-GAIN	FOCAL	1	C3
TCGA.AG.3906.01A	19	6730990	6759555	20	0.7646	LARGE-GAIN	FOCAL	3	"GPR108,SH2D3A,TRIP10"
TCGA.A6.3808.01A	19	6754026	6934975	41	1.2766	LARGE-GAIN	FOCAL	3	"ADGRE1,SH2D3A,VAV1"
TCGA.AA.A010.01A	19	6772772	6832053	10	1.1891	LARGE-GAIN	FOCAL	1	VAV1
TCGA.CK.5914.01A	19	6833517	6939941	27	0.7774	LARGE-GAIN	FOCAL	2	"ADGRE1,VAV1"
TCGA.AA.A00N.01A	19	6847959	6939941	23	0.8432	LARGE-GAIN	FOCAL	2	"ADGRE1,VAV1"
TCGA.AG.3909.01A	19	6847959	6939941	23	0.8209	LARGE-GAIN	FOCAL	2	"ADGRE1,VAV1"
TCGA.AG.4009.01A	19	6850626	6856995	4	0.9232	LARGE-GAIN	FOCAL	1	VAV1
TCGA.AG.3611.01A	19	6897123	6939941	15	0.8774	LARGE-GAIN	FOCAL	1	ADGRE1
TCGA.AA.A010.01A	19	7075010	7152709	19	0.8217	LARGE-GAIN	FOCAL	2	"INSR,ZNF557"
TCGA.AA.3662	19	7078320	7663767	126	1.3532	LARGE-GAIN	FOCAL	9	"ARHGEF18,C19orf45,CAMSAP3,INSR,MCOLN1,PEX11G,PNPLA6,ZNF358,ZNF557"
TCGA.AA.A00N.01A	19	7117039	7267318	20	0.7833	LARGE-GAIN	FOCAL	1	INSR
TCGA.AG.3611.01A	19	7117039	7267318	20	0.9294	LARGE-GAIN	FOCAL	1	INSR
TCGA.AG.3909.01A	19	7117039	7267318	19	0.6985	LARGE-GAIN	FOCAL	1	INSR
TCGA.AM.5820	19	7662528	7712276	12	1.0155	LARGE-GAIN	FOCAL	5	"CAMSAP3,PCP2,PET100,STXBP2,XAB2"
TCGA.AA.3930.01A	19	7703570	7703869	2	3.0233	LARGE-GAIN	FOCAL	1	STXBP2
TCGA.AA.A010.01A	19	7794220	7795847	5	1.087	LARGE-GAIN	FOCAL	1	CLEC4G
TCGA.CK.5914.01A	19	7811331	7833687	9	0.9734	LARGE-GAIN	FOCAL	2	"CD209,CLEC4M"
TCGA.AG.3906.01A	19	7963526	8002870	12	0.835	LARGE-GAIN	FOCAL	6	"CTXN1,LRRC8E,MAP2K7,SNAPC2,TGFBR3L,TIMM44"
TCGA.AA.A010.01A	19	8117873	8154714	17	1.0332	LARGE-GAIN	FOCAL	2	"CCL25,FBN3"
TCGA.AA.A00N.01A	19	8130756	8182022	34	0.8788	LARGE-GAIN	FOCAL	1	FBN3
TCGA.AA.3861.01A	19	8137939	8206549	42	1.1445	LARGE-GAIN	FOCAL	1	FBN3
TCGA.AA.3862.01A	19	8137939	8398550	66	0.8027	LARGE-GAIN	FOCAL	6	"CD320,CERS4,FBN3,KANK3,NDUFA7,RPS28"
TCGA.AG.3611.01A	19	8188307	8190726	3	0.8827	LARGE-GAIN	FOCAL	1	FBN3
TCGA.AG.3611.01A	19	8319332	8326541	7	0.7983	LARGE-GAIN	FOCAL	1	CERS4
TCGA.AA.A00A.01A	19	8520252	8548017	11	0.9049	LARGE-GAIN	FOCAL	1	HNRNPM
TCGA.AA.A00D.01A	19	8520252	8548017	11	0.991	LARGE-GAIN	FOCAL	1	HNRNPM
TCGA.AA.A00L.01A	19	8520252	8548017	11	1.0501	LARGE-GAIN	FOCAL	1	HNRNPM
TCGA.AA.A00Q.01A	19	8520252	8548017	11	0.8415	LARGE-GAIN	FOCAL	1	HNRNPM
TCGA.AG.3906.01A	19	8577230	8601781	8	0.6885	LARGE-GAIN	FOCAL	2	"MYO1F,ZNF414"
TCGA.AG.3909.01A	19	8959556	8973925	9	0.7491	LARGE-GAIN	FOCAL	1	MUC16
TCGA.CK.5914.01A	19	8959556	9002070	30	1.2763	LARGE-GAIN	FOCAL	1	MUC16
TCGA.AA.A00N.01A	19	8971628	9270742	100	1.1707	LARGE-GAIN	FOCAL	6	"MUC16,OR1M1,OR7G1,OR7G2,OR7G3,ZNF317"
TCGA.AG.3909.01A	19	8976228	9021012	54	1.2496	LARGE-GAIN	FOCAL	1	MUC16
TCGA.CK.5914.01A	19	9002507	9028252	41	1.8907	LARGE-GAIN	FOCAL	1	MUC16
TCGA.AG.3909.01A	19	9024106	9270742	43	0.8976	LARGE-GAIN	FOCAL	6	"MUC16,OR1M1,OR7G1,OR7G2,OR7G3,ZNF317"
TCGA.CK.5914.01A	19	9033174	9203869	26	1.3305	LARGE-GAIN	FOCAL	1	MUC16
TCGA.AA.A010.01A	19	9203869	9296426	11	0.9366	LARGE-GAIN	FOCAL	6	"OR1M1,OR7D2,OR7G1,OR7G2,OR7G3,ZNF317"
TCGA.AA.A00D.01A	19	9406142	9490678	10	0.939	LARGE-GAIN	FOCAL	4	"ZNF177,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.CK.5914.01A	19	9488907	9491826	5	0.6921	LARGE-GAIN	FOCAL	2	"ZNF177,ZNF559-ZNF177"
TCGA.AG.3891.01A	19	9577602	9585913	8	0.7653	LARGE-GAIN	FOCAL	1	ZNF560
TCGA.CK.5914.01A	19	9720928	9768657	10	0.8241	LARGE-GAIN	FOCAL	2	"ZNF561,ZNF562"
TCGA.A6.3808.01A	19	9959718	10071069	7	1.6609	LARGE-GAIN	FOCAL	3	"COL5A3,OLFM2,PIN1"
TCGA.AG.A01W.01A	19	10058578	10066393	8	0.7677	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	19	10081581	10107977	24	0.9369	LARGE-GAIN	FOCAL	1	COL5A3
TCGA.A6.3808.01A	19	10087159	10206641	47	1.3078	LARGE-GAIN	FOCAL	4	"ANGPTL6,C19orf66,COL5A3,RDH8"
TCGA.AG.3906.01A	19	10385430	10418859	11	1.176	LARGE-GAIN	FOCAL	4	"ICAM1,ICAM4,ICAM5,ZGLP1"
TCGA.AG.3909.01A	19	10870363	10897222	6	0.7304	LARGE-GAIN	FOCAL	1	DNM2
TCGA.CK.5914.01A	19	10870363	10897222	6	1.0942	LARGE-GAIN	FOCAL	1	DNM2
TCGA.AG.4009.01A	19	10897222	11015575	17	0.831	LARGE-GAIN	FOCAL	4	"C19orf38,CARM1,DNM2,TMED1"
TCGA.CK.5914.01A	19	10959120	10966896	3	1.1986	LARGE-GAIN	FOCAL	1	C19orf38
TCGA.AA.A00N.01A	19	11215849	11240172	13	0.7706	LARGE-GAIN	FOCAL	1	LDLR
TCGA.AG.4009.01A	19	11649673	11687865	10	0.7373	LARGE-GAIN	FOCAL	3	"ACP5,CNN1,ELOF1"
TCGA.AA.3862.01A	19	11889080	12126438	29	1.0206	LARGE-GAIN	FOCAL	8	"ZNF433,ZNF439,ZNF440,ZNF441,ZNF491,ZNF69,ZNF700,ZNF763"
TCGA.AZ.4684.01A	19	12501233	12543142	9	0.7469	LARGE-GAIN	FOCAL	2	"ZNF443,ZNF799"
TCGA.DM.A28M.01A	19	12540941	12541558	2	1.7896	LARGE-GAIN	FOCAL	1	ZNF443
TCGA.AA.3509.01A	19	12540941	12543838	6	0.9509	LARGE-GAIN	FOCAL	1	ZNF443
TCGA.A6.3807	19	12577722	12641059	8	1.01	LARGE-GAIN	FOCAL	2	"ZNF564,ZNF709"
TCGA.AG.3906.01A	19	12734482	12739313	4	0.9149	LARGE-GAIN	FOCAL	1	ZNF791
TCGA.AG.3906.01A	19	13215697	13248934	11	1.1288	LARGE-GAIN	FOCAL	2	"NACC1,TRMT1"
TCGA.AG.3909.01A	19	13414306	13565869	15	0.8134	LARGE-GAIN	FOCAL	1	CACNA1A
TCGA.CK.5914.01A	19	13427899	13565869	10	1.0141	LARGE-GAIN	FOCAL	1	CACNA1A
TCGA.AA.A00N.01A	19	13441005	13565869	9	0.8061	LARGE-GAIN	FOCAL	1	CACNA1A
TCGA.AG.3891.01A	19	13865053	13910485	13	0.9814	LARGE-GAIN	FOCAL	4	"C19orf53,CCDC130,MRI1,ZSWIM4"
TCGA.AG.3906.01A	19	13865053	13988014	27	1.0059	LARGE-GAIN	FOCAL	4	"C19orf53,CCDC130,MRI1,ZSWIM4"
TCGA.AG.3909.01A	19	13869665	13910485	9	0.7086	LARGE-GAIN	FOCAL	4	"C19orf53,CCDC130,MRI1,ZSWIM4"
TCGA.AG.3891.01A	19	13936317	13993563	9	0.8315	LARGE-GAIN	FOCAL	3	"C19orf57,NANOS3,ZSWIM4"
TCGA.AG.3891.01A	19	14138986	14236885	23	0.7515	LARGE-GAIN	FOCAL	8	"ASF1B,C19orf67,IL27RA,LOC113230,PALM3,PRKACA,RLN3,SAMD1"
TCGA.AG.3906.01A	19	14199191	14236885	10	1.7399	LARGE-GAIN	FOCAL	3	"ASF1B,PRKACA,SAMD1"
TCGA.AG.3891.01A	19	14551943	14640302	23	0.745	LARGE-GAIN	FOCAL	4	"DNAJB1,GIPC1,PKN1,PTGER1"
TCGA.AG.3906.01A	19	14554262	14627261	16	1.3312	LARGE-GAIN	FOCAL	4	"DNAJB1,GIPC1,PKN1,PTGER1"
TCGA.CK.5914.01A	19	14676894	14774208	25	0.9835	LARGE-GAIN	FOCAL	3	"ADGRE3,CLEC17A,NDUFB7"
TCGA.AG.3909.01A	19	14676894	14785472	25	0.7226	LARGE-GAIN	FOCAL	3	"ADGRE3,CLEC17A,NDUFB7"
TCGA.AA.A00N.01A	19	14682664	14785472	25	0.684	LARGE-GAIN	FOCAL	3	"ADGRE3,CLEC17A,NDUFB7"
TCGA.CK.5914.01A	19	14815815	14992074	30	0.7748	LARGE-GAIN	FOCAL	6	"ADGRE2,OR7A10,OR7A17,OR7A5,OR7C1,ZNF333"
TCGA.AG.3909.01A	19	14815815	15061040	32	0.7399	LARGE-GAIN	FOCAL	8	"ADGRE2,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,ZNF333"
TCGA.AA.A010.01A	19	14866427	14951712	13	0.6879	LARGE-GAIN	FOCAL	3	"ADGRE2,OR7A5,OR7C1"
TCGA.AG.3909.01A	19	15133694	15197840	8	0.7549	LARGE-GAIN	FOCAL	2	"CASP14,CCDC105"
TCGA.CK.5914.01A	19	15133694	15197840	8	1.1975	LARGE-GAIN	FOCAL	2	"CASP14,CCDC105"
TCGA.AG.3906.01A	19	15219830	15229926	8	1.2319	LARGE-GAIN	FOCAL	2	"ILVBL,SYDE1"
TCGA.AG.3891.01A	19	15536021	15579428	15	0.8143	LARGE-GAIN	FOCAL	2	"RASAL3,WIZ"
TCGA.AG.3906.01A	19	15537755	15571810	7	1.5038	LARGE-GAIN	FOCAL	2	"RASAL3,WIZ"
TCGA.AA.A00Q.01A	19	15760675	16006286	27	0.809	LARGE-GAIN	FOCAL	8	"CYP4F12,CYP4F2,CYP4F3,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H5"
TCGA.CK.5914.01A	19	15770001	15807701	10	0.9802	LARGE-GAIN	FOCAL	2	"CYP4F12,CYP4F3"
TCGA.AA.A00N.01A	19	15795614	15838802	5	1.677	LARGE-GAIN	FOCAL	1	CYP4F12
TCGA.AA.A00N.01A	19	15852171	15917874	4	0.7901	LARGE-GAIN	FOCAL	3	"OR10H1,OR10H3,OR10H5"
TCGA.AG.3594	19	15934636	15949894	6	0.9951	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6541	19	16112874	16194503	29	0.7145	LARGE-GAIN	FOCAL	1	TPM4
TCGA.AA.A00N.01A	19	16259521	16280409	9	0.9147	LARGE-GAIN	FOCAL	2	"CIB3,HSH2D"
TCGA.AG.3909.01A	19	16259521	16296200	11	1.1368	LARGE-GAIN	FOCAL	2	"CIB3,HSH2D"
TCGA.CK.5914.01A	19	16259521	16318813	18	0.8038	LARGE-GAIN	FOCAL	4	"AP1M1,CIB3,FAM32A,HSH2D"
TCGA.AA.A00L.01A	19	16472534	16620258	33	0.7552	LARGE-GAIN	FOCAL	3	"C19orf44,CALR3,EPS15L1"
TCGA.AG.3906.01A	19	16665926	16764795	8	1.0118	LARGE-GAIN	FOCAL	3	"MED26,SLC35E1,SMIM7"
TCGA.CK.5914.01A	19	16771992	16918348	20	0.8815	LARGE-GAIN	FOCAL	2	"NWD1,TMEM38A"
TCGA.AG.3909.01A	19	16790744	16883900	12	1.1513	LARGE-GAIN	FOCAL	2	"NWD1,TMEM38A"
TCGA.AA.A00N.01A	19	16790744	16918348	19	0.9286	LARGE-GAIN	FOCAL	2	"NWD1,TMEM38A"
TCGA.AA.A010.01A	19	16797059	16890105	10	0.9709	LARGE-GAIN	FOCAL	2	"NWD1,TMEM38A"
TCGA.AA.A01Q.01A	19	16869994	16890105	6	0.9447	LARGE-GAIN	FOCAL	1	NWD1
TCGA.AA.A00N.01A	19	17025180	17113018	21	1.092	LARGE-GAIN	FOCAL	1	CPAMD8
TCGA.CK.5914.01A	19	17038767	17113018	17	1.3147	LARGE-GAIN	FOCAL	1	CPAMD8
TCGA.AG.3906.01A	19	17831698	17838218	5	1.4947	LARGE-GAIN	FOCAL	1	MAP1S
TCGA.AG.A014.01A	19	18100475	18120351	4	3.5954	LARGE-GAIN	FOCAL	2	"ARRDC2,KCNN1"
TCGA.AG.3906.01A	19	18239631	18288446	16	1.0603	LARGE-GAIN	FOCAL	3	"IFI30,MAST3,PIK3R2"
TCGA.AG.3906.01A	19	18648393	18652449	4	1.4756	LARGE-GAIN	FOCAL	1	FKBP8
TCGA.AG.3906.01A	19	18709233	18726733	5	0.9449	LARGE-GAIN	FOCAL	2	"CRLF1,TMEM59L"
TCGA.AG.3906.01A	19	18956762	18989683	17	1.1878	LARGE-GAIN	FOCAL	3	"CERS1,GDF1,UPF1"
TCGA.AG.3906.01A	19	19710075	19756449	14	1.0738	LARGE-GAIN	FOCAL	4	"ATP13A1,GMIP,LPAR2,PBX4"
TCGA.CM.6172	19	20594142	20632399	4	0.9174	LARGE-GAIN	FOCAL	0	None
TCGA.DC.4745	19	20594142	20721233	11	1.0851	LARGE-GAIN	FOCAL	1	ZNF737
TCGA.AA.3509.01A	19	21131498	21132172	2	1.9352	LARGE-GAIN	FOCAL	1	ZNF85
TCGA.AZ.4684.01A	19	21131498	21132172	2	1.634	LARGE-GAIN	FOCAL	1	ZNF85
TCGA.A6.6653	19	21406018	21414081	3	0.9226	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	19	21991301	22951951	51	1.0008	LARGE-GAIN	FOCAL	8	"ZNF208,ZNF257,ZNF43,ZNF492,ZNF676,ZNF729,ZNF98,ZNF99"
TCGA.AA.A02E.01A	19	22018738	22170012	10	0.8379	LARGE-GAIN	FOCAL	2	"ZNF208,ZNF43"
TCGA.AA.3862.01A	19	22574299	22575623	4	2.6532	LARGE-GAIN	FOCAL	1	ZNF98
TCGA.CI.6621	19	23387787	23393876	3	2.2928	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6812	19	23393285	23416217	3	1.775	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	19	23869734	24270032	9	0.8602	LARGE-GAIN	FOCAL	4	"ZNF254,ZNF675,ZNF681,ZNF726"
TCGA.AF.3913	19	27828663	28649421	168	0.7338	LARGE-GAIN	FOCAL	0	None
TCGA.AF.3913	19	28656006	29244984	209	0.8855	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	19	30097143	30205729	11	0.7046	LARGE-GAIN	FOCAL	3	"C19orf12,PLEKHF1,POP4"
TCGA.AY.A69D	19	30128719	30149460	4	1.5384	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3891.01A	19	30303823	30314514	7	0.8778	LARGE-GAIN	FOCAL	1	CCNE1
TCGA.AG.3906.01A	19	30303823	30314514	7	1.179	LARGE-GAIN	FOCAL	1	CCNE1
TCGA.AG.A00C.01A	19	30308005	30314514	6	0.7023	LARGE-GAIN	FOCAL	1	CCNE1
TCGA.CK.5914.01A	19	30462021	30505773	9	0.8575	LARGE-GAIN	FOCAL	1	URI1
TCGA.AA.A00N.01A	19	30462021	31840044	17	0.6887	LARGE-GAIN	FOCAL	3	"TSHZ3,URI1,ZNF536"
TCGA.AG.4015	19	30693452	30746752	14	0.8143	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.5407	19	32674311	32675406	5	1.5027	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	19	33350699	33502537	39	0.8209	LARGE-GAIN	FOCAL	4	"C19orf40,CEP89,RHPN2,SLC7A9"
TCGA.AG.3909.01A	19	33444553	33503495	18	0.8653	LARGE-GAIN	FOCAL	3	"C19orf40,CEP89,RHPN2"
TCGA.AA.A00N.01A	19	33450758	33502537	16	1.0004	LARGE-GAIN	FOCAL	3	"C19orf40,CEP89,RHPN2"
TCGA.AA.3861.01A	19	33470900	33503495	11	2.1422	LARGE-GAIN	FOCAL	1	RHPN2
TCGA.AA.3862.01A	19	33470900	33503495	11	2.1835	LARGE-GAIN	FOCAL	1	RHPN2
TCGA.CK.5914.01A	19	33481368	33502537	9	1.5587	LARGE-GAIN	FOCAL	1	RHPN2
TCGA.AA.A01Q.01A	19	33486880	33493105	3	0.8814	LARGE-GAIN	FOCAL	1	RHPN2
TCGA.AG.3906.01A	19	33615964	33701655	22	0.8505	LARGE-GAIN	FOCAL	4	"GPATCH1,LRP3,SLC7A10,WDR88"
TCGA.AG.A016.01A	19	33695514	33700186	4	1.389	LARGE-GAIN	FOCAL	2	"LRP3,SLC7A10"
TCGA.AM.5820	19	33876460	33906763	13	0.9563	LARGE-GAIN	FOCAL	1	PEPD
TCGA.AA.A00L.01A	19	34687492	34832295	16	0.801	LARGE-GAIN	FOCAL	2	"KIAA0355,LSM14A"
TCGA.AA.A010.01A	19	34884084	34921425	14	0.8837	LARGE-GAIN	FOCAL	3	"GPI,PDCD2L,UBA2"
TCGA.AA.A00L.01A	19	34895516	35249911	30	0.8192	LARGE-GAIN	FOCAL	7	"PDCD2L,SCGB2B2,UBA2,WTIP,ZNF181,ZNF302,ZNF599"
TCGA.AA.A00D.01A	19	34895516	35451731	37	0.8883	LARGE-GAIN	FOCAL	9	"PDCD2L,SCGB2B2,UBA2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AG.3906.01A	19	35499975	35530484	15	0.9709	LARGE-GAIN	FOCAL	2	"GRAMD1A,SCN1B"
TCGA.AG.3891.01A	19	35749816	35775625	11	0.7017	LARGE-GAIN	FOCAL	3	"HAMP,LSR,USF2"
TCGA.AG.3906.01A	19	35749816	35793319	14	0.7849	LARGE-GAIN	FOCAL	4	"HAMP,LSR,MAG,USF2"
TCGA.AG.A016.01A	19	36037359	36048508	8	1.082	LARGE-GAIN	FOCAL	2	"ATP4A,TMEM147"
TCGA.AA.A010.01A	19	36048508	36139694	31	0.7643	LARGE-GAIN	FOCAL	5	"ATP4A,COX6B1,ETV2,HAUS5,RBM42"
TCGA.AG.3906.01A	19	36205487	36219634	11	1.4002	LARGE-GAIN	FOCAL	2	"KMT2B,ZBTB32"
TCGA.AA.3930.01A	19	36214277	36218028	7	1.4412	LARGE-GAIN	FOCAL	1	KMT2B
TCGA.CK.5914.01A	19	36317365	36326538	4	1.305	LARGE-GAIN	FOCAL	1	NPHS1
TCGA.AA.3967.01A	19	36342135	36503861	51	0.8852	LARGE-GAIN	FOCAL	10	"ALKBH6,APLP1,HCST,KIRREL2,LRFN3,NFKBID,NPHS1,SDHAF1,SYNE4,TYROBP"
TCGA.AG.3891.01A	19	36347956	36369737	22	0.7435	LARGE-GAIN	FOCAL	2	"APLP1,KIRREL2"
TCGA.AG.3906.01A	19	36349262	36369737	19	0.901	LARGE-GAIN	FOCAL	2	"APLP1,KIRREL2"
TCGA.AG.4009.01A	19	36380743	36399004	12	0.6859	LARGE-GAIN	FOCAL	3	"HCST,NFKBID,TYROBP"
TCGA.AG.A016.01A	19	36501428	36515271	13	0.8207	LARGE-GAIN	FOCAL	3	"ALKBH6,CLIP3,LOC101927572"
TCGA.AA.A010.01A	19	36530266	36545827	4	1.1154	LARGE-GAIN	FOCAL	3	"LOC101927572,THAP8,WDR62"
TCGA.AA.3841	19	36595435	36611260	3	1.3257	LARGE-GAIN	FOCAL	4	"OVOL3,POLR2I,TBCB,WDR62"
TCGA.AG.3906.01A	19	36611564	36692782	14	0.8929	LARGE-GAIN	FOCAL	4	"CAPNS1,COX7A1,TBCB,ZNF565"
TCGA.CK.5914.01A	19	37646712	37697880	7	0.9165	LARGE-GAIN	FOCAL	2	"ZNF585A,ZNF585B"
TCGA.AY.A54L.01A	19	38746788	38755515	2	1.2295	LARGE-GAIN	FOCAL	2	"PPP1R14A,SPINT2"
TCGA.A6.3808.01A	19	38945856	38973938	17	2.1221	LARGE-GAIN	FOCAL	1	RYR1
TCGA.A6.3808.01A	19	38998300	39123032	67	0.8919	LARGE-GAIN	FOCAL	3	"EIF3K,MAP4K1,RYR1"
TCGA.AG.3906.01A	19	39051715	39062638	4	1.6351	LARGE-GAIN	FOCAL	1	RYR1
TCGA.AG.3906.01A	19	39219594	39294097	10	0.8722	LARGE-GAIN	FOCAL	5	"ACTN4,CAPN12,LGALS4,LGALS7,LGALS7B"
TCGA.AG.3906.01A	19	39330728	39359723	5	0.9711	LARGE-GAIN	FOCAL	2	"HNRNPL,RINL"
TCGA.AG.3906.01A	19	39798256	39825824	8	1.6916	LARGE-GAIN	FOCAL	2	"GMFG,LRFN1"
TCGA.AG.3891.01A	19	39805110	39826534	7	0.8274	LARGE-GAIN	FOCAL	2	"GMFG,LRFN1"
TCGA.AG.3909.01A	19	40093135	40228496	15	0.6829	LARGE-GAIN	FOCAL	4	"CLC,LGALS13,LGALS14,LGALS16"
TCGA.AA.A00N.01A	19	40093135	40276299	19	1.029	LARGE-GAIN	FOCAL	5	"CLC,LEUTX,LGALS13,LGALS14,LGALS16"
TCGA.CK.5914.01A	19	40095766	40228496	15	1.0812	LARGE-GAIN	FOCAL	4	"CLC,LGALS13,LGALS14,LGALS16"
TCGA.AG.3906.01A	19	40316406	40327144	7	0.9219	LARGE-GAIN	FOCAL	2	"DYRK1B,FBL"
TCGA.AA.3862.01A	19	40357358	40419547	19	1.873	LARGE-GAIN	FOCAL	1	FCGBP
TCGA.AA.3861.01A	19	40357358	40423929	22	1.5629	LARGE-GAIN	FOCAL	1	FCGBP
TCGA.AA.3509.01A	19	40367257	40382241	6	1.4484	LARGE-GAIN	FOCAL	1	FCGBP
TCGA.AZ.4684.01A	19	40367257	40382241	6	1.0381	LARGE-GAIN	FOCAL	1	FCGBP
TCGA.AA.A010.01A	19	40421055	40540277	20	0.8384	LARGE-GAIN	FOCAL	4	"FCGBP,PSMC4,ZNF546,ZNF780B"
TCGA.AG.A01W.01A	19	40445249	40453786	5	0.6913	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01Q.01A	19	40477031	40486212	5	0.8165	LARGE-GAIN	FOCAL	1	PSMC4
TCGA.AY.6196	19	40502918	40626823	16	0.9203	LARGE-GAIN	FOCAL	3	"ZNF546,ZNF780A,ZNF780B"
TCGA.AA.A00Q.01A	19	40514328	40588986	12	0.8083	LARGE-GAIN	FOCAL	3	"ZNF546,ZNF780A,ZNF780B"
TCGA.CK.5914.01A	19	40540277	40588986	8	0.703	LARGE-GAIN	FOCAL	2	"ZNF780A,ZNF780B"
TCGA.AG.3906.01A	19	40697898	40728930	6	1.3069	LARGE-GAIN	FOCAL	3	"CNTD2,MAP3K10,TTC9B"
TCGA.AG.3906.01A	19	40947347	40964010	4	0.9289	LARGE-GAIN	FOCAL	2	"BLVRB,SERTAD3"
TCGA.AG.3906.01A	19	41021166	41039980	6	1.4327	LARGE-GAIN	FOCAL	1	SPTBN4
TCGA.AG.3906.01A	19	41098983	41135253	17	1.1884	LARGE-GAIN	FOCAL	1	LTBP4
TCGA.AA.A010.01A	19	41349654	41387886	18	0.8775	LARGE-GAIN	FOCAL	2	"CYP2A6,CYP2A7"
TCGA.AA.A00N.01A	19	41349654	41509854	20	1.4172	LARGE-GAIN	FOCAL	3	"CYP2A6,CYP2A7,CYP2B6"
TCGA.CK.5914.01A	19	41386347	41594783	14	1.1489	LARGE-GAIN	FOCAL	3	"CYP2A13,CYP2A7,CYP2B6"
TCGA.AA.A00N.01A	19	41510230	41595903	10	0.7563	LARGE-GAIN	FOCAL	2	"CYP2A13,CYP2B6"
TCGA.CK.5914.01A	19	41736822	41762330	12	1.0075	LARGE-GAIN	FOCAL	1	AXL
TCGA.AG.3906.01A	19	41822238	41837994	5	1.2562	LARGE-GAIN	FOCAL	2	"CCDC97,TGFB1"
TCGA.AG.3891.01A	19	41822238	41854153	8	0.7822	LARGE-GAIN	FOCAL	2	"CCDC97,TGFB1"
TCGA.CK.5914.01A	19	41945694	42314821	41	0.8001	LARGE-GAIN	FOCAL	8	"ATP5SL,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,ERICH4"
TCGA.AF.5654	19	42036792	42338766	82	0.7571	LARGE-GAIN	FOCAL	6	"CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7"
TCGA.AA.A00N.01A	19	42125967	42127997	4	2.0285	LARGE-GAIN	FOCAL	1	CEACAM4
TCGA.AA.A00N.01A	19	42131927	42259477	16	0.6878	LARGE-GAIN	FOCAL	4	"CEACAM4,CEACAM5,CEACAM6,CEACAM7"
TCGA.AA.A00N.01A	19	42300550	42314821	7	0.7303	LARGE-GAIN	FOCAL	1	CEACAM3
TCGA.AG.3909.01A	19	42506288	42546675	8	0.7429	LARGE-GAIN	FOCAL	1	GRIK5
TCGA.AA.A00N.01A	19	42525402	42558445	6	0.7821	LARGE-GAIN	FOCAL	1	GRIK5
TCGA.AG.3906.01A	19	42736155	42821809	26	0.8534	LARGE-GAIN	FOCAL	6	"CIC,ERF,GSK3A,PAFAH1B3,PRR19,TMEM145"
TCGA.AG.3891.01A	19	42790876	42801183	12	0.9373	LARGE-GAIN	FOCAL	1	CIC
TCGA.AG.A016.01A	19	42790876	42804072	13	0.9215	LARGE-GAIN	FOCAL	2	"CIC,PAFAH1B3"
TCGA.AA.3509.01A	19	43258400	43529126	29	0.6907	LARGE-GAIN	FOCAL	5	"PSG1,PSG11,PSG6,PSG7,PSG8"
TCGA.AZ.5407	19	43559329	43846237	46	0.8568	LARGE-GAIN	FOCAL	4	"PSG2,PSG4,PSG5,PSG9"
TCGA.AA.A010.01A	19	43910577	43979514	9	1.2617	LARGE-GAIN	FOCAL	3	"LYPD3,PHLDB3,TEX101"
TCGA.AG.A01W.01A	19	43916136	43917784	4	1.0057	LARGE-GAIN	FOCAL	1	TEX101
TCGA.AG.3891.01A	19	44039189	44057526	9	0.8064	LARGE-GAIN	FOCAL	2	"XRCC1,ZNF575"
TCGA.AG.3906.01A	19	44047548	44058786	8	1.5906	LARGE-GAIN	FOCAL	1	XRCC1
TCGA.AA.A00N.01A	19	44159543	44174145	5	0.9933	LARGE-GAIN	FOCAL	1	PLAUR
TCGA.AG.4009.01A	19	44301711	44339622	5	0.8052	LARGE-GAIN	FOCAL	2	"LYPD5,ZNF283"
TCGA.AA.A010.01A	19	44301711	44376668	10	0.9505	LARGE-GAIN	FOCAL	3	"LYPD5,ZNF283,ZNF404"
TCGA.AA.3509.01A	19	44351089	44384110	4	1.5189	LARGE-GAIN	FOCAL	2	"ZNF283,ZNF404"
TCGA.AZ.4684.01A	19	44351089	44466821	9	0.8916	LARGE-GAIN	FOCAL	4	"ZNF221,ZNF283,ZNF404,ZNF45"
TCGA.AA.A00D.01A	19	44531519	44738895	28	0.7145	LARGE-GAIN	FOCAL	8	"ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF234,ZNF284"
TCGA.AZ.4684.01A	19	44980602	44981652	2	1.7267	LARGE-GAIN	FOCAL	1	ZNF180
TCGA.AA.A00N.01A	19	45016870	45186638	29	0.7971	LARGE-GAIN	FOCAL	4	"CEACAM19,CEACAM20,IGSF23,PVR"
TCGA.CK.5914.01A	19	45016870	45303582	51	0.7407	LARGE-GAIN	FOCAL	7	"BCL3,CBLC,CEACAM16,CEACAM19,CEACAM20,IGSF23,PVR"
TCGA.AA.A010.01A	19	45116904	45213672	27	0.7608	LARGE-GAIN	FOCAL	4	"CEACAM16,CEACAM19,IGSF23,PVR"
TCGA.AG.3906.01A	19	45391318	45528827	36	0.7321	LARGE-GAIN	FOCAL	8	"APOC1,APOC2,APOC4,APOE,CLPTM1,PVRL2,RELB,TOMM40"
TCGA.AG.A016.01A	19	45565331	45578921	8	1.0304	LARGE-GAIN	FOCAL	2	"CLASRP,ZNF296"
TCGA.AA.A024.01A	19	45572277	45573981	4	2.6146	LARGE-GAIN	FOCAL	1	CLASRP
TCGA.AG.A016.01A	19	45801363	45868047	27	0.8337	LARGE-GAIN	FOCAL	4	"CKM,ERCC2,KLC3,MARK4"
TCGA.CK.5914.01A	19	46623499	46800249	11	1.0174	LARGE-GAIN	FOCAL	3	"IGFL1,IGFL2,IGFL3"
TCGA.AA.A010.01A	19	46623499	46996778	41	0.686	LARGE-GAIN	FOCAL	9	"CCDC8,HIF3A,IGFL1,IGFL2,IGFL3,PNMAL1,PNMAL2,PPP5C,PPP5D1"
TCGA.AA.A00N.01A	19	46627096	46733981	9	1.0953	LARGE-GAIN	FOCAL	3	"IGFL1,IGFL2,IGFL3"
TCGA.AG.4009.01A	19	46663894	46893262	28	0.7452	LARGE-GAIN	FOCAL	4	"HIF3A,IGFL1,IGFL2,PPP5C"
TCGA.AG.A01W.01A	19	47482717	47490559	9	0.8369	LARGE-GAIN	FOCAL	1	ARHGAP35
TCGA.AA.A00J.01A	19	47909662	47944348	11	1.6746	LARGE-GAIN	FOCAL	2	"MEIS3,SLC8A2"
TCGA.AA.A00Q.01A	19	48254127	48607793	44	0.7116	LARGE-GAIN	FOCAL	9	"BSPH1,CABP5,CRX,ELSPBP1,GLTSCR2,PLA2G4C,SEPW1,SULT2A1,TPRX1"
TCGA.AA.A00N.01A	19	48495202	48653296	48	0.7401	LARGE-GAIN	FOCAL	5	"BSPH1,CABP5,ELSPBP1,LIG1,PLA2G4C"
TCGA.AG.3909.01A	19	48511873	48601348	23	0.8274	LARGE-GAIN	FOCAL	3	"CABP5,ELSPBP1,PLA2G4C"
TCGA.CK.5914.01A	19	48517377	48577986	16	1.2842	LARGE-GAIN	FOCAL	3	"CABP5,ELSPBP1,PLA2G4C"
TCGA.AA.A010.01A	19	49055445	49079155	3	0.76	LARGE-GAIN	FOCAL	1	SULT2B1
TCGA.AG.3909.01A	19	49055445	49104346	7	1.0018	LARGE-GAIN	FOCAL	2	"FAM83E,SULT2B1"
TCGA.AG.3891.01A	19	49224004	49259446	20	0.9574	LARGE-GAIN	FOCAL	4	"FGF21,FUT1,IZUMO1,RASIP1"
TCGA.AG.4009.01A	19	49259446	49436924	57	0.6817	LARGE-GAIN	FOCAL	7	"BCAT2,FGF21,HSD17B14,NUCB1,PLEKHA4,PPP1R15A,TULP2"
TCGA.AA.A010.01A	19	49298626	49445658	60	0.7966	LARGE-GAIN	FOCAL	7	"BCAT2,DHDH,HSD17B14,NUCB1,PLEKHA4,PPP1R15A,TULP2"
TCGA.AA.A00L.01A	19	49335855	49400526	32	0.7441	LARGE-GAIN	FOCAL	4	"HSD17B14,PLEKHA4,PPP1R15A,TULP2"
TCGA.AG.3891.01A	19	49564713	49601620	5	0.7809	LARGE-GAIN	FOCAL	3	"KCNA7,NTF4,SNRNP70"
TCGA.AG.3906.01A	19	49564713	49637886	18	0.8121	LARGE-GAIN	FOCAL	6	"C19orf73,KCNA7,LIN7B,NTF4,PPFIA3,SNRNP70"
TCGA.AG.4009.01A	19	49838743	49860454	14	0.8837	LARGE-GAIN	FOCAL	2	"CD37,TEAD2"
TCGA.AA.A00L.01A	19	49851918	49877926	10	0.8497	LARGE-GAIN	FOCAL	2	"DKKL1,TEAD2"
TCGA.AG.3906.01A	19	49933747	49962188	16	0.8313	LARGE-GAIN	FOCAL	3	"ALDH16A1,PIH1D1,SLC17A7"
TCGA.AG.3891.01A	19	49934588	49939758	6	0.9006	LARGE-GAIN	FOCAL	1	SLC17A7
TCGA.AA.A010.01A	19	50002721	50059535	16	0.7624	LARGE-GAIN	FOCAL	4	"FCGRT,NOSIP,RCN3,RPS11"
TCGA.AG.3906.01A	19	50138804	50172051	19	0.7692	LARGE-GAIN	FOCAL	4	"BCL2L12,IRF3,RRAS,SCAF1"
TCGA.CK.5914.01A	19	50453205	50544932	23	0.7143	LARGE-GAIN	FOCAL	3	"SIGLEC11,VRK3,ZNF473"
TCGA.AG.3611.01A	19	50461990	50463357	2	1.0584	LARGE-GAIN	FOCAL	1	SIGLEC11
TCGA.AG.3909.01A	19	50482314	50547877	16	0.7747	LARGE-GAIN	FOCAL	2	"VRK3,ZNF473"
TCGA.AA.A00L.01A	19	50862728	50868736	5	0.8432	LARGE-GAIN	FOCAL	1	NAPSA
TCGA.AG.3906.01A	19	51133011	51273817	26	0.8899	LARGE-GAIN	FOCAL	5	"C19orf81,CLEC11A,GPR32,SHANK1,SYT3"
TCGA.AA.A01Q.01A	19	51446858	51471259	9	0.7047	LARGE-GAIN	FOCAL	2	"KLK5,KLK6"
TCGA.AG.3909.01A	19	51628240	51729022	17	0.927	LARGE-GAIN	FOCAL	3	"CD33,SIGLEC7,SIGLEC9"
TCGA.CK.5914.01A	19	51628240	51729022	17	1.147	LARGE-GAIN	FOCAL	3	"CD33,SIGLEC7,SIGLEC9"
TCGA.AA.A00N.01A	19	51628882	51770630	23	0.8402	LARGE-GAIN	FOCAL	4	"CD33,SIGLEC7,SIGLEC9,SIGLECL1"
TCGA.AA.A00N.01A	19	51883728	51920367	10	0.7605	LARGE-GAIN	FOCAL	4	"C19orf84,LIM2,LOC100129083,SIGLEC10"
TCGA.AA.A010.01A	19	51918046	52076522	33	0.8912	LARGE-GAIN	FOCAL	7	"CEACAM18,LOC100129083,SIGLEC10,SIGLEC12,SIGLEC6,SIGLEC8,ZNF175"
TCGA.AA.A024.01A	19	51960383	51961141	4	1.9901	LARGE-GAIN	FOCAL	1	SIGLEC8
TCGA.CK.5914.01A	19	51981698	52003142	11	1.3771	LARGE-GAIN	FOCAL	2	"CEACAM18,SIGLEC12"
TCGA.AA.A00N.01A	19	51981698	52076522	20	1.0545	LARGE-GAIN	FOCAL	4	"CEACAM18,SIGLEC12,SIGLEC6,ZNF175"
TCGA.AG.3909.01A	19	51981698	52084593	21	0.7588	LARGE-GAIN	FOCAL	4	"CEACAM18,SIGLEC12,SIGLEC6,ZNF175"
TCGA.AA.A01Q.01A	19	52032977	52034452	3	1.4169	LARGE-GAIN	FOCAL	1	SIGLEC6
TCGA.AA.A00N.01A	19	52130678	52149568	9	1.1226	LARGE-GAIN	FOCAL	2	"SIGLEC14,SIGLEC5"
TCGA.AG.3909.01A	19	52130678	52149568	9	0.8274	LARGE-GAIN	FOCAL	2	"SIGLEC14,SIGLEC5"
TCGA.AA.A010.01A	19	52496084	52570513	16	0.7165	LARGE-GAIN	FOCAL	4	"ZNF432,ZNF614,ZNF615,ZNF841"
TCGA.AA.A010.01A	19	52693301	52772779	13	1.1161	LARGE-GAIN	FOCAL	1	PPP2R1A
TCGA.AA.A00N.01A	19	52709185	52728926	10	0.8902	LARGE-GAIN	FOCAL	1	PPP2R1A
TCGA.AG.3909.01A	19	52724193	52728926	3	0.8155	LARGE-GAIN	FOCAL	1	PPP2R1A
TCGA.AG.A00C.01A	19	52785002	52803600	6	0.7058	LARGE-GAIN	FOCAL	2	"ZNF480,ZNF766"
TCGA.AA.A010.01A	19	52852358	52909109	10	0.8294	LARGE-GAIN	FOCAL	3	"ZNF528,ZNF610,ZNF880"
TCGA.AA.3930.01A	19	53304034	53384382	7	0.6953	LARGE-GAIN	FOCAL	3	"ZNF28,ZNF320,ZNF468"
TCGA.AA.3930.01A	19	53844576	53854894	4	0.7771	LARGE-GAIN	FOCAL	1	ZNF845
TCGA.AA.A00Q.01A	19	53994222	54301449	56	1.0802	LARGE-GAIN	FOCAL	4	"DPRX,NLRP12,ZNF331,ZNF813"
TCGA.AG.3891.01A	19	54175167	54299092	47	0.797	LARGE-GAIN	FOCAL	1	NLRP12
TCGA.CK.5914.01A	19	54183139	54228642	24	1.0684	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3605.01A	19	54194094	54210650	5	1.5607	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	19	54251835	54265541	8	1.3164	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	19	54304442	54327108	8	0.9791	LARGE-GAIN	FOCAL	1	NLRP12
TCGA.AA.A00N.01A	19	54723305	54881777	63	0.6831	LARGE-GAIN	FOCAL	8	"LAIR1,LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5"
TCGA.AA.A010.01A	19	54723305	54926676	66	0.813	LARGE-GAIN	FOCAL	9	"LAIR1,LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5,TTYH1"
TCGA.AA.3930.01A	19	54778495	54781670	6	0.7322	LARGE-GAIN	FOCAL	1	LILRB2
TCGA.CK.5914.01A	19	54778495	54848684	26	0.7699	LARGE-GAIN	FOCAL	4	"LILRA3,LILRA4,LILRA5,LILRB2"
TCGA.AA.A01D.01A	19	54818657	54818917	2	6.1185	LARGE-GAIN	FOCAL	1	LILRA5
TCGA.AA.A00K.01A	19	54872471	54963218	15	0.9066	LARGE-GAIN	FOCAL	3	"LAIR1,LENG8,TTYH1"
TCGA.AA.A00N.01A	19	55014052	55150068	40	0.8073	LARGE-GAIN	FOCAL	4	"LAIR2,LILRA1,LILRA2,LILRB1"
TCGA.AG.A01W.01A	19	55049445	55055004	5	0.9101	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	19	55054520	55239095	40	0.9387	LARGE-GAIN	FOCAL	5	"KIR3DL3,LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.AA.A00N.01A	19	55174346	55239095	11	1.5858	LARGE-GAIN	FOCAL	2	"KIR3DL3,LILRB4"
TCGA.AG.3909.01A	19	55174346	55385664	51	0.8023	LARGE-GAIN	FOCAL	9	"FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LILRB4"
TCGA.A6.3808.01A	19	55175267	55424016	50	0.7275	LARGE-GAIN	FOCAL	10	"FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LILRB4,NCR1"
TCGA.AA.A00N.01A	19	55246668	55378129	31	0.7521	LARGE-GAIN	FOCAL	7	"KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3"
TCGA.AZ.4684.01A	19	55301485	55336421	8	0.6886	LARGE-GAIN	FOCAL	2	"KIR2DL4,KIR3DL1"
TCGA.AA.3967.01A	19	55435066	55512087	23	1.0029	LARGE-GAIN	FOCAL	2	"NLRP2,NLRP7"
TCGA.AG.3891.01A	19	55435066	55512087	23	0.7365	LARGE-GAIN	FOCAL	2	"NLRP2,NLRP7"
TCGA.A6.3808.01A	19	55944486	55951941	4	3.1128	LARGE-GAIN	FOCAL	1	SHISA7
TCGA.AG.3909.01A	19	56226372	56273915	9	0.7236	LARGE-GAIN	FOCAL	2	"NLRP9,RFPL4A"
TCGA.AA.A010.01A	19	56241170	56379056	20	0.6894	LARGE-GAIN	FOCAL	5	"NLRP11,NLRP4,NLRP9,RFPL4A,RFPL4AL1"
TCGA.CK.5914.01A	19	56369072	56499139	29	0.8457	LARGE-GAIN	FOCAL	3	"NLRP13,NLRP4,NLRP8"
TCGA.AA.A010.01A	19	56436271	56477542	7	0.7442	LARGE-GAIN	FOCAL	2	"NLRP13,NLRP8"
TCGA.AA.A010.01A	19	56499139	56552250	14	0.7472	LARGE-GAIN	FOCAL	2	"NLRP5,NLRP8"
TCGA.AA.A00D.01A	19	56903050	57132629	28	0.8656	LARGE-GAIN	FOCAL	7	"ZFP28,ZNF470,ZNF471,ZNF582,ZNF583,ZNF667,ZNF71"
TCGA.DM.A28M.01A	19	56918421	56935563	5	0.8124	LARGE-GAIN	FOCAL	1	ZNF583
TCGA.AG.3906.01A	19	58849579	58921256	10	1.0325	LARGE-GAIN	FOCAL	7	"A1BG,RNF225,RPS5,ZNF497,ZNF584,ZNF837,ZSCAN22"
TCGA.AG.3906.01A	19	59058696	59082320	10	1.1882	LARGE-GAIN	FOCAL	4	"CHMP2A,MZF1,TRIM28,UBE2M"
TCGA.AG.A01W.01A	19	59323234	59326514	3	1.1229	LARGE-GAIN	FOCAL	0	None
TCGA.CK.4952.01A	19	59427346	59437752	7	0.9223	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	19	60109287	60113123	3	0.9033	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	20	68282	239676	12	0.7918	LARGE-GAIN	FOCAL	6	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132"
TCGA.AG.3906.01A	20	238350	464576	33	0.7703	LARGE-GAIN	FOCAL	9	"C20orf96,CSNK2A1,DEFB132,NRSN2,RBCK1,SOX12,TBC1D20,TRIB3,ZCCHC3"
TCGA.AG.A00C.01A	20	256572	397833	20	0.7132	LARGE-GAIN	FOCAL	6	"C20orf96,NRSN2,RBCK1,SOX12,TRIB3,ZCCHC3"
TCGA.AA.A010.01A	20	741628	1115717	25	0.8484	LARGE-GAIN	FOCAL	5	"ANGPT4,FAM110A,PSMF1,RSPO4,SLC52A3"
TCGA.A6.3808.01A	20	858767	1146783	20	1.7474	LARGE-GAIN	FOCAL	3	"ANGPT4,PSMF1,RSPO4"
TCGA.CK.5914.01A	20	1471886	1600466	15	0.7412	LARGE-GAIN	FOCAL	3	"SIRPB1,SIRPB2,SIRPD"
TCGA.AG.3909.01A	20	1471886	2361551	42	1.1469	LARGE-GAIN	FOCAL	9	"LOC388780,PDYN,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,STK35,TGM3"
TCGA.DM.A1DB	20	1748125	1754968	3	2.216	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	20	2312601	2552806	32	1.1386	LARGE-GAIN	FOCAL	5	"SNRPB,TGM3,TGM6,TMC2,ZNF343"
TCGA.AG.3909.01A	20	2375050	2621738	41	0.7487	LARGE-GAIN	FOCAL	4	"SNRPB,TGM6,TMC2,ZNF343"
TCGA.AG.3909.01A	20	2644044	2690168	3	1.0779	LARGE-GAIN	FOCAL	2	"EBF4,IDH3B"
TCGA.AG.3906.01A	20	2840936	2987941	17	0.8379	LARGE-GAIN	FOCAL	2	"PTPRA,VPS16"
TCGA.AA.A00N.01A	20	2944859	2968936	6	0.7296	LARGE-GAIN	FOCAL	1	PTPRA
TCGA.AG.3906.01A	20	2996467	3008354	9	1.5151	LARGE-GAIN	FOCAL	1	PTPRA
TCGA.AG.3906.01A	20	3016179	3025011	4	0.927	LARGE-GAIN	FOCAL	2	"GNRH2,PTPRA"
TCGA.A6.5656	20	3081637	3444859	102	0.998	LARGE-GAIN	FOCAL	7	"C20orf194,DDRGK1,FASTKD5,ITPA,LZTS3,SLC4A11,UBOX5"
TCGA.AG.A01W.01A	20	3151964	3159120	5	0.838	LARGE-GAIN	FOCAL	1	LZTS3
TCGA.AA.3815.01A	20	3180640	3180971	2	1.6525	LARGE-GAIN	FOCAL	1	DDRGK1
TCGA.AA.3930.01A	20	3180640	3180971	2	2.2705	LARGE-GAIN	FOCAL	1	DDRGK1
TCGA.AG.3909.01A	20	3236605	3640510	62	0.8488	LARGE-GAIN	FOCAL	3	"ATRN,C20orf194,GFRA4"
TCGA.AA.A010.01A	20	3515880	3543809	9	0.7393	LARGE-GAIN	FOCAL	1	ATRN
TCGA.AA.A00L.01A	20	3669760	3719242	19	0.8144	LARGE-GAIN	FOCAL	2	"HSPA12B,SIGLEC1"
TCGA.AG.3906.01A	20	3719242	3785185	27	1.2251	LARGE-GAIN	FOCAL	5	"C20orf27,CDC25B,CENPB,HSPA12B,SPEF1"
TCGA.AG.A00C.01A	20	3719242	3835224	32	0.7895	LARGE-GAIN	FOCAL	7	"AP5S1,C20orf27,CDC25B,CENPB,HSPA12B,MAVS,SPEF1"
TCGA.AG.3891.01A	20	3719242	3844851	39	0.7293	LARGE-GAIN	FOCAL	7	"AP5S1,C20orf27,CDC25B,CENPB,HSPA12B,MAVS,SPEF1"
TCGA.AG.3909.01A	20	3838235	5081410	57	0.7513	LARGE-GAIN	FOCAL	10	"ADRA1D,MAVS,PANK2,PRND,PRNP,RASSF2,RNF24,SLC23A2,SMOX,TMEM230"
TCGA.AA.3941	20	4235818	4402636	109	0.7581	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	20	4465996	4475429	10	1.1044	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	20	4541424	5357967	359	0.6848	LARGE-GAIN	FOCAL	8	"CDS2,PCNA,PRND,PRNP,PROKR2,RASSF2,SLC23A2,TMEM230"
TCGA.AA.3941	20	4544192	5253640	299	0.9682	LARGE-GAIN	FOCAL	7	"CDS2,PCNA,PRND,PRNP,RASSF2,SLC23A2,TMEM230"
TCGA.AA.3869	20	4780946	5144316	129	0.7265	LARGE-GAIN	FOCAL	5	"CDS2,PCNA,RASSF2,SLC23A2,TMEM230"
TCGA.AG.3909.01A	20	5100183	5170739	13	1.1111	LARGE-GAIN	FOCAL	2	"CDS2,PCNA"
TCGA.AA.3869	20	5145680	5533331	172	1.1073	LARGE-GAIN	FOCAL	3	"CDS2,GPCPD1,PROKR2"
TCGA.AA.3685	20	5179692	5418436	119	1.3368	LARGE-GAIN	FOCAL	1	PROKR2
TCGA.AA.3941	20	5270263	5316111	34	1.0153	LARGE-GAIN	FOCAL	1	PROKR2
TCGA.AA.3941	20	5337411	5357967	8	1.152	LARGE-GAIN	FOCAL	0	None
TCGA.AD.6899	20	5381649	5402631	9	1.2617	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	20	5386159	6148224	318	0.9755	LARGE-GAIN	FOCAL	8	"C20orf196,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,TRMT6"
TCGA.AA.3982	20	5386159	6174498	323	0.7313	LARGE-GAIN	FOCAL	8	"C20orf196,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,TRMT6"
TCGA.AA.A00L.01A	20	5528255	5930887	36	1.1134	LARGE-GAIN	FOCAL	4	"C20orf196,CHGB,GPCPD1,TRMT6"
TCGA.AG.4009.01A	20	5896905	5965380	28	1.0006	LARGE-GAIN	FOCAL	3	"CHGB,MCM8,TRMT6"
TCGA.AA.A00L.01A	20	5932633	5953655	11	1.4618	LARGE-GAIN	FOCAL	1	MCM8
TCGA.AG.A00C.01A	20	5974135	6031403	12	0.9002	LARGE-GAIN	FOCAL	3	"CRLS1,LRRN4,MCM8"
TCGA.AG.4009.01A	20	6011887	6100020	22	0.7373	LARGE-GAIN	FOCAL	3	"CRLS1,FERMT1,LRRN4"
TCGA.D5.6929	20	6361241	6361343	3	1.2256	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	6619724	6814337	115	1.1358	LARGE-GAIN	FOCAL	1	BMP2
TCGA.AA.3941	20	6667134	6711571	48	0.9252	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	6814441	7272126	202	0.8509	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	7272506	7454812	76	1.151	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	7457160	7806067	138	0.8405	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	7806719	8675038	364	1.1324	LARGE-GAIN	FOCAL	3	"HAO1,PLCB1,TMX4"
TCGA.AA.A00N.01A	20	7864174	7962937	8	1.4231	LARGE-GAIN	FOCAL	2	"HAO1,TMX4"
TCGA.AA.3955	20	8291656	11599970	1533	1.0232	LARGE-GAIN	FOCAL	9	"ANKEF1,JAG1,LAMP5,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25"
TCGA.AA.3941	20	8647461	8808293	94	0.8075	LARGE-GAIN	FOCAL	1	PLCB1
TCGA.AG.3909.01A	20	8665529	8722064	14	0.7438	LARGE-GAIN	FOCAL	1	PLCB1
TCGA.AG.4009.01A	20	8665529	9624754	73	0.8346	LARGE-GAIN	FOCAL	4	"LAMP5,PAK7,PLCB1,PLCB4"
TCGA.AD.A5EK	20	8678553	8785714	71	0.8184	LARGE-GAIN	FOCAL	1	PLCB1
TCGA.AA.3975	20	8718546	10498956	868	0.9132	LARGE-GAIN	FOCAL	8	"ANKEF1,LAMP5,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25"
TCGA.AG.3909.01A	20	8731403	9288416	11	1.0294	LARGE-GAIN	FOCAL	2	"PLCB1,PLCB4"
TCGA.A6.2675	20	8761807	9623858	401	0.8106	LARGE-GAIN	FOCAL	4	"LAMP5,PAK7,PLCB1,PLCB4"
TCGA.AD.A5EK	20	8785813	9364576	260	1.135	LARGE-GAIN	FOCAL	2	"PLCB1,PLCB4"
TCGA.AA.3941	20	8812824	8843844	29	0.8721	LARGE-GAIN	FOCAL	1	PLCB1
TCGA.AA.3869	20	8845418	10178021	608	1.1159	LARGE-GAIN	FOCAL	5	"ANKEF1,LAMP5,PAK7,PLCB1,PLCB4"
TCGA.AY.A69D	20	8850034	8850562	3	1.5099	LARGE-GAIN	FOCAL	1	PLCB1
TCGA.AA.3941	20	8897481	8920527	14	0.8292	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	20	8956266	9051988	56	0.8494	LARGE-GAIN	FOCAL	1	PLCB4
TCGA.AD.A5EK	20	9364798	10641469	590	0.8628	LARGE-GAIN	FOCAL	8	"ANKEF1,JAG1,LAMP5,MKKS,PAK7,PLCB4,SLX4IP,SNAP25"
TCGA.A6.6654	20	9403479	10360050	485	0.7547	LARGE-GAIN	FOCAL	5	"ANKEF1,LAMP5,PAK7,PLCB4,SNAP25"
TCGA.DC.6157	20	9495533	11333034	862	0.6881	LARGE-GAIN	FOCAL	7	"ANKEF1,JAG1,LAMP5,MKKS,PAK7,SLX4IP,SNAP25"
TCGA.AA.3869	20	10179950	11100676	407	0.7743	LARGE-GAIN	FOCAL	4	"JAG1,MKKS,SLX4IP,SNAP25"
TCGA.AA.3941	20	10216047	10459612	125	0.7403	LARGE-GAIN	FOCAL	3	"MKKS,SLX4IP,SNAP25"
TCGA.G4.6625	20	10417444	10427473	8	0.7467	LARGE-GAIN	FOCAL	1	SLX4IP
TCGA.AA.3941	20	10481771	10688743	64	0.8567	LARGE-GAIN	FOCAL	2	"JAG1,SLX4IP"
TCGA.AD.A5EK	20	10790964	11954637	481	0.8567	LARGE-GAIN	FOCAL	1	BTBD3
TCGA.D5.6923	20	11123104	11394104	155	0.7464	LARGE-GAIN	FOCAL	0	None
TCGA.DC.6157	20	11333099	16076696	1927	1.2673	LARGE-GAIN	FOCAL	9	"BTBD3,ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.G4.6310	20	11648659	14761709	1116	0.7896	LARGE-GAIN	FOCAL	9	"BTBD3,ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.DC.4745	20	11888479	14556194	971	0.6859	LARGE-GAIN	FOCAL	9	"BTBD3,ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AG.4009.01A	20	11899682	13714316	38	0.9284	LARGE-GAIN	FOCAL	5	"BTBD3,ESF1,ISM1,SPTLC3,TASP1"
TCGA.AA.A00N.01A	20	11903253	13561490	28	1.2128	LARGE-GAIN	FOCAL	4	"BTBD3,ISM1,SPTLC3,TASP1"
TCGA.AD.A5EK	20	12043201	12245854	75	0.8309	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	12294967	12481268	76	0.8156	LARGE-GAIN	FOCAL	0	None
TCGA.A6.2675	20	12650324	13199298	294	0.7085	LARGE-GAIN	FOCAL	1	SPTLC3
TCGA.AD.A5EK	20	12763138	12888453	59	0.7859	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6923	20	12816736	12822318	4	0.7805	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3975	20	12832569	12943736	46	0.8836	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	12889313	15884022	1151	1.18	LARGE-GAIN	FOCAL	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3941	20	13226546	14162284	240	0.7072	LARGE-GAIN	FOCAL	6	"ESF1,ISM1,MACROD2,NDUFAF5,SEL1L2,TASP1"
TCGA.EI.6514	20	13313945	13416551	39	0.9758	LARGE-GAIN	FOCAL	1	TASP1
TCGA.EI.6514	20	13435156	15296030	539	0.9878	LARGE-GAIN	FOCAL	6	"ESF1,FLRT3,MACROD2,NDUFAF5,SEL1L2,TASP1"
TCGA.AG.A00C.01A	20	13714316	13789472	17	0.6783	LARGE-GAIN	FOCAL	2	"ESF1,NDUFAF5"
TCGA.AG.4009.01A	20	13763103	13769168	3	0.725	LARGE-GAIN	FOCAL	2	"ESF1,NDUFAF5"
TCGA.AG.3909.01A	20	13775432	17489484	96	0.8328	LARGE-GAIN	FOCAL	9	"BFSP1,FLRT3,KIF16B,MACROD2,NDUFAF5,OTOR,PCSK2,SEL1L2,SNRPB2"
TCGA.AA.3975	20	13821603	16761604	1362	0.8788	LARGE-GAIN	FOCAL	6	"FLRT3,KIF16B,MACROD2,OTOR,SEL1L2,SNRPB2"
TCGA.NH.A8F7	20	14124368	17413872	1597	0.992	LARGE-GAIN	FOCAL	6	"FLRT3,KIF16B,MACROD2,OTOR,PCSK2,SNRPB2"
TCGA.EI.6508	20	14137022	14342718	51	0.7029	LARGE-GAIN	FOCAL	2	"FLRT3,MACROD2"
TCGA.AA.3712	20	14215600	14398718	42	1.0019	LARGE-GAIN	FOCAL	2	"FLRT3,MACROD2"
TCGA.AF.4110	20	14236784	14878295	193	1.8671	LARGE-GAIN	FOCAL	2	"FLRT3,MACROD2"
TCGA.AA.3685	20	14248456	14248545	2	0.9897	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AA.3685	20	14249516	14493799	54	1.7135	LARGE-GAIN	FOCAL	2	"FLRT3,MACROD2"
TCGA.AA.3968	20	14398718	14948964	188	0.7445	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AA.3712	20	14408089	14523824	34	0.6894	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AA.3685	20	14495110	15875690	666	1.2109	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.CM.6172	20	14523711	14562026	13	0.8198	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AA.3712	20	14524403	14562026	11	1.2539	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AA.3712	20	14562459	14837327	92	0.692	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.EI.7002	20	14562791	14705887	56	0.771	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.F5.6813	20	14675587	16212620	822	0.9299	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.G4.6317	20	14781683	14831624	17	0.924	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AA.3941	20	14868352	14945838	36	1.011	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.DC.5337	20	14877885	14923389	29	1.1455	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AF.4110	20	14883126	15174440	144	1.1891	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.CA.6715	20	14983867	15037033	18	0.743	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.G4.6294	20	15086861	15154574	39	0.6897	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AG.3898	20	15095267	15372191	113	0.6815	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AA.3971	20	15216194	15229946	14	0.8304	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.G4.6295	20	15274881	15402079	56	0.8297	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AG.3898	20	15379675	17184313	1077	1.1124	LARGE-GAIN	FOCAL	4	"KIF16B,MACROD2,OTOR,SNRPB2"
TCGA.EI.6514	20	15405433	15742941	224	0.7112	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.DM.A28F	20	15407875	15476725	43	0.7311	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.EI.6514	20	15743911	16540599	481	1.0099	LARGE-GAIN	FOCAL	2	"KIF16B,MACROD2"
TCGA.AA.3869	20	15852130	16817705	602	0.7696	LARGE-GAIN	FOCAL	4	"KIF16B,MACROD2,OTOR,SNRPB2"
TCGA.AG.3725	20	15891418	15897754	3	1.5611	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.AA.3941	20	15980918	16009256	20	0.8342	LARGE-GAIN	FOCAL	1	MACROD2
TCGA.DC.6157	20	16078264	16336310	166	1.0265	LARGE-GAIN	FOCAL	1	KIF16B
TCGA.AA.3941	20	16078766	16813301	445	0.6969	LARGE-GAIN	FOCAL	3	"KIF16B,OTOR,SNRPB2"
TCGA.AF.4110	20	16273852	16552237	140	0.7504	LARGE-GAIN	FOCAL	1	KIF16B
TCGA.DY.A1DG	20	16663068	17457673	404	0.6885	LARGE-GAIN	FOCAL	3	"OTOR,PCSK2,SNRPB2"
TCGA.AG.3898	20	17184751	18251516	448	1.4407	LARGE-GAIN	FOCAL	10	"BANF2,BFSP1,CSRP2BP,DSTN,MGME1,OVOL2,PCSK2,PET117,RRBP1,SNX5"
TCGA.AA.3941	20	17264695	17357024	40	0.9268	LARGE-GAIN	FOCAL	1	PCSK2
TCGA.AA.3941	20	17384585	18259391	371	1.0345	LARGE-GAIN	FOCAL	10	"BANF2,BFSP1,CSRP2BP,DSTN,MGME1,OVOL2,PCSK2,PET117,RRBP1,SNX5"
TCGA.D5.5541	20	17541829	17547931	3	1.0893	LARGE-GAIN	FOCAL	1	BFSP1
TCGA.AG.A00C.01A	20	17928083	18142447	19	0.7105	LARGE-GAIN	FOCAL	5	"CSRP2BP,MGME1,OVOL2,PET117,SNX5"
TCGA.D5.6533	20	18286129	18742733	157	0.7617	LARGE-GAIN	FOCAL	6	"DTD1,DZANK1,POLR3F,RBBP9,SEC23B,ZNF133"
TCGA.AA.3941	20	18310170	18901411	216	0.8719	LARGE-GAIN	FOCAL	7	"C20orf78,DTD1,DZANK1,POLR3F,RBBP9,SCP2D1,SEC23B"
TCGA.DM.A0XD	20	18403126	18619499	74	0.7426	LARGE-GAIN	FOCAL	5	"DTD1,DZANK1,POLR3F,RBBP9,SEC23B"
TCGA.D5.6533	20	18747987	19012189	120	0.7791	LARGE-GAIN	FOCAL	2	"C20orf78,SCP2D1"
TCGA.CM.5868	20	18761681	19499901	372	0.8094	LARGE-GAIN	FOCAL	3	"C20orf78,SCP2D1,SLC24A3"
TCGA.AF.4110	20	18798010	19919633	593	0.7588	LARGE-GAIN	FOCAL	3	"C20orf78,RIN2,SLC24A3"
TCGA.AA.3941	20	18920873	20091321	682	0.8647	LARGE-GAIN	FOCAL	5	"CFAP61,CRNKL1,NAA20,RIN2,SLC24A3"
TCGA.AA.A01S	20	19048632	20805283	846	1.29745	LARGE-GAIN	FOCAL	7	"CFAP61,CRNKL1,INSM1,NAA20,RALGAPA2,RIN2,SLC24A3"
TCGA.A6.5667	20	19253690	19718086	285	0.9517	LARGE-GAIN	FOCAL	1	SLC24A3
TCGA.CM.4752	20	19286147	19313112	20	1.075	LARGE-GAIN	FOCAL	1	SLC24A3
TCGA.AG.A00C.01A	20	19646489	19679175	8	0.7263	LARGE-GAIN	FOCAL	1	SLC24A3
TCGA.AA.A00N.01A	20	19677394	19937212	8	1.0362	LARGE-GAIN	FOCAL	2	"RIN2,SLC24A3"
TCGA.AA.3667	20	19680656	20979361	589	1.0973	LARGE-GAIN	FOCAL	7	"CFAP61,CRNKL1,INSM1,NAA20,RALGAPA2,RIN2,SLC24A3"
TCGA.AG.4009.01A	20	19698108	20024089	25	1.4734	LARGE-GAIN	FOCAL	4	"CRNKL1,NAA20,RIN2,SLC24A3"
TCGA.AD.6965	20	19883822	20008580	80	0.7723	LARGE-GAIN	FOCAL	2	"NAA20,RIN2"
TCGA.AG.4009.01A	20	20025905	20051461	9	1.8517	LARGE-GAIN	FOCAL	2	"CFAP61,CRNKL1"
TCGA.AG.3909.01A	20	20028370	21349064	105	0.723	LARGE-GAIN	FOCAL	6	"CFAP61,CRNKL1,INSM1,KIZ,RALGAPA2,XRN2"
TCGA.AG.4009.01A	20	20054888	20377280	29	1.2009	LARGE-GAIN	FOCAL	3	"CFAP61,INSM1,RALGAPA2"
TCGA.AA.3941	20	20120076	22090386	580	0.7931	LARGE-GAIN	FOCAL	8	"CFAP61,INSM1,KIZ,NKX2-2,NKX2-4,PAX1,RALGAPA2,XRN2"
TCGA.AA.3952	20	20188859	20675153	132	1.0607	LARGE-GAIN	FOCAL	3	"CFAP61,INSM1,RALGAPA2"
TCGA.F5.6863	20	20383083	20655465	61	0.7979	LARGE-GAIN	FOCAL	1	RALGAPA2
TCGA.AG.4009.01A	20	20392619	21116991	35	1.6045	LARGE-GAIN	FOCAL	2	"KIZ,RALGAPA2"
TCGA.EI.6512	20	20443343	20445379	2	0.824	LARGE-GAIN	FOCAL	1	RALGAPA2
TCGA.EI.6512	20	20447693	21534969	303	1.6507	LARGE-GAIN	FOCAL	5	"KIZ,NKX2-2,NKX2-4,RALGAPA2,XRN2"
TCGA.AA.3496	20	20792449	21567304	246	0.9305	LARGE-GAIN	FOCAL	4	"KIZ,NKX2-2,NKX2-4,XRN2"
TCGA.AA.3667	20	20979636	21541736	133	0.7804	LARGE-GAIN	FOCAL	4	"KIZ,NKX2-2,NKX2-4,XRN2"
TCGA.CK.5914.01A	20	21106703	21349064	33	0.8457	LARGE-GAIN	FOCAL	2	"KIZ,XRN2"
TCGA.AG.4009.01A	20	21142470	21306870	10	0.943	LARGE-GAIN	FOCAL	2	"KIZ,XRN2"
TCGA.AA.3955	20	21202814	21333650	27	0.8764	LARGE-GAIN	FOCAL	2	"KIZ,XRN2"
TCGA.D5.6533	20	21703614	22668781	324	0.8041	LARGE-GAIN	FOCAL	1	FOXA2
TCGA.F4.6704	20	21734757	21989609	68	1.786	LARGE-GAIN	FOCAL	0	None
TCGA.A6.5660	20	22039867	22284558	79	0.6977	LARGE-GAIN	FOCAL	0	None
TCGA.CM.6679	20	22650047	22799911	105	0.82035	LARGE-GAIN	FOCAL	0	None
TCGA.EI.6514	20	22919501	22974777	17	0.7155	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A014.01A	20	23064896	23433173	22	0.9036	LARGE-GAIN	FOCAL	6	"CD93,CST11,CSTL1,GZF1,NAPB,NXT1"
TCGA.AG.A01W.01A	20	23292985	23298721	5	0.8876	LARGE-GAIN	FOCAL	0	None
TCGA.AU.3779	20	23384903	23387945	3	1.4771	LARGE-GAIN	FOCAL	1	NAPB
TCGA.AA.A00N.01A	20	23666476	24523697	16	1.482	LARGE-GAIN	FOCAL	6	"CST1,CST2,CST4,CST5,GGTLC1,SYNDIG1"
TCGA.AG.3909.01A	20	23667678	23860094	11	1.2751	LARGE-GAIN	FOCAL	4	"CST1,CST2,CST4,CST5"
TCGA.AD.A5EK	20	23938369	25141398	508	0.8259	LARGE-GAIN	FOCAL	6	"ACSS1,APMAP,CST7,GGTLC1,SYNDIG1,VSX1"
TCGA.CK.5914.01A	20	23965805	25027394	32	0.8283	LARGE-GAIN	FOCAL	5	"ACSS1,APMAP,CST7,GGTLC1,SYNDIG1"
TCGA.AF.2689	20	24549636	24601942	23	1.1595	LARGE-GAIN	FOCAL	1	SYNDIG1
TCGA.AA.3844	20	24557863	25592475	319	0.6953	LARGE-GAIN	FOCAL	10	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NINL,PYGB,SYNDIG1,VSX1"
TCGA.AG.3909.01A	20	24993191	25038383	12	0.8802	LARGE-GAIN	FOCAL	1	ACSS1
TCGA.AG.A00C.01A	20	25056847	25195454	8	0.7916	LARGE-GAIN	FOCAL	2	"ENTPD6,VSX1"
TCGA.AM.5820	20	25254687	25301021	12	1.1243	LARGE-GAIN	FOCAL	2	"ABHD12,PYGB"
TCGA.CM.5860	20	25297908	25499816	32	0.7819	LARGE-GAIN	FOCAL	3	"ABHD12,GINS1,NINL"
TCGA.AA.3862.01A	20	25319815	25388396	3	2.3152	LARGE-GAIN	FOCAL	2	"ABHD12,GINS1"
TCGA.DC.6154	20	25433820	26289924	91	0.7274	LARGE-GAIN	FOCAL	3	"NANP,NINL,ZNF337"
TCGA.AA.A010.01A	20	25439002	25755459	28	0.7026	LARGE-GAIN	FOCAL	3	"NANP,NINL,ZNF337"
TCGA.AA.3846	20	25451179	26167979	79	1.6848	LARGE-GAIN	FOCAL	3	"NANP,NINL,ZNF337"
TCGA.CK.5914.01A	20	25478804	26063512	19	0.7612	LARGE-GAIN	FOCAL	3	"NANP,NINL,ZNF337"
TCGA.A6.3810.01A	20	25604442	25755459	6	1.1588	LARGE-GAIN	FOCAL	2	"NANP,ZNF337"
TCGA.AA.3861.01A	20	25755459	29632560	7	2.2323	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3862.01A	20	25755459	29632560	10	2.1054	LARGE-GAIN	FOCAL	0	None
TCGA.A6.5656	20	25862277	25970764	6	0.8994	LARGE-GAIN	FOCAL	0	None
TCGA.A6.5660	20	26266312	29567453	9	1.0094	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3524	20	29505892	29529824	2	2.1886	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	29505892	29598226	9	0.8229	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	20	29623125	30028434	20	1.6368	LARGE-GAIN	FOCAL	6	"DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123"
TCGA.AA.A00N.01A	20	29845416	29993835	12	0.7018	LARGE-GAIN	FOCAL	5	"DEFB115,DEFB116,DEFB118,DEFB119,DEFB121"
TCGA.AG.4009.01A	20	29845416	29993835	12	1.0788	LARGE-GAIN	FOCAL	5	"DEFB115,DEFB116,DEFB118,DEFB119,DEFB121"
TCGA.AG.3909.01A	20	29845416	30037784	14	1.2162	LARGE-GAIN	FOCAL	6	"DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123"
TCGA.AA.A00Q.01A	20	29890988	30065591	15	1.2602	LARGE-GAIN	FOCAL	7	"DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,REM1"
TCGA.AG.A01W.01A	20	29914019	29922559	6	1.2732	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	20	29960611	30065591	13	0.8418	LARGE-GAIN	FOCAL	6	"DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,REM1"
TCGA.AG.3906.01A	20	30037784	30070041	5	1.5211	LARGE-GAIN	FOCAL	3	"DEFB123,DEFB124,REM1"
TCGA.CK.5914.01A	20	30037784	30193169	20	1.0301	LARGE-GAIN	FOCAL	5	"DEFB123,DEFB124,HM13,ID1,REM1"
TCGA.AG.3909.01A	20	30053259	30153969	15	0.6926	LARGE-GAIN	FOCAL	3	"DEFB124,HM13,REM1"
TCGA.AG.4009.01A	20	30065591	30155870	12	0.7852	LARGE-GAIN	FOCAL	2	"HM13,REM1"
TCGA.AA.A00Q.01A	20	30070041	30309467	20	0.7324	LARGE-GAIN	FOCAL	5	"BCL2L1,COX4I2,HM13,ID1,REM1"
TCGA.AA.A00D.01A	20	30156906	30538052	45	0.9639	LARGE-GAIN	FOCAL	10	"BCL2L1,COX4I2,DUSP15,FOXS1,HM13,ID1,MYLK2,PDRG1,TPX2,TTLL9"
TCGA.AG.4009.01A	20	30193169	30437264	36	1.7938	LARGE-GAIN	FOCAL	6	"BCL2L1,COX4I2,FOXS1,ID1,MYLK2,TPX2"
TCGA.CK.5914.01A	20	30226764	30354312	9	1.7858	LARGE-GAIN	FOCAL	3	"BCL2L1,COX4I2,TPX2"
TCGA.AG.3909.01A	20	30226764	30414361	27	0.7144	LARGE-GAIN	FOCAL	4	"BCL2L1,COX4I2,MYLK2,TPX2"
TCGA.AA.A00Q.01A	20	30345229	30388723	16	1.4575	LARGE-GAIN	FOCAL	1	TPX2
TCGA.CK.5914.01A	20	30358117	30371476	7	1.306	LARGE-GAIN	FOCAL	1	TPX2
TCGA.CK.5914.01A	20	30380485	30388723	6	2.3767	LARGE-GAIN	FOCAL	1	TPX2
TCGA.CK.5914.01A	20	30407313	30474933	24	1.4175	LARGE-GAIN	FOCAL	4	"DUSP15,FOXS1,MYLK2,TTLL9"
TCGA.AG.4009.01A	20	30438391	30458873	7	0.7185	LARGE-GAIN	FOCAL	2	"DUSP15,TTLL9"
TCGA.AG.A016.01A	20	30450337	30458873	4	1.9813	LARGE-GAIN	FOCAL	2	"DUSP15,TTLL9"
TCGA.AG.4009.01A	20	30474933	30538052	17	1.8245	LARGE-GAIN	FOCAL	2	"PDRG1,TTLL9"
TCGA.AG.A01W.01A	20	30482748	30716624	12	0.8122	LARGE-GAIN	FOCAL	6	"CCM2L,HCK,PDRG1,TM9SF4,TTLL9,XKR7"
TCGA.AA.A00N.01A	20	30486223	30525150	10	0.8123	LARGE-GAIN	FOCAL	1	TTLL9
TCGA.AG.3909.01A	20	30486223	30530690	12	1.5624	LARGE-GAIN	FOCAL	1	TTLL9
TCGA.CK.5914.01A	20	30486223	30533565	13	2.1526	LARGE-GAIN	FOCAL	2	"PDRG1,TTLL9"
TCGA.AD.6965	20	30516654	30600666	18	0.7698	LARGE-GAIN	FOCAL	4	"CCM2L,PDRG1,TTLL9,XKR7"
TCGA.AG.3906.01A	20	30534240	30956783	57	0.6977	LARGE-GAIN	FOCAL	9	"ASXL1,CCM2L,HCK,KIF3B,PDRG1,PLAGL2,POFUT1,TM9SF4,XKR7"
TCGA.CK.5914.01A	20	30539625	30617456	12	1.8325	LARGE-GAIN	FOCAL	3	"CCM2L,PDRG1,XKR7"
TCGA.AA.3971	20	30541442	30569864	6	2.8553	LARGE-GAIN	FOCAL	1	XKR7
TCGA.A6.A56B	20	30541442	30578466	7	0.6818	LARGE-GAIN	FOCAL	1	XKR7
TCGA.AG.4009.01A	20	30555948	30753056	34	1.2594	LARGE-GAIN	FOCAL	4	"CCM2L,HCK,TM9SF4,XKR7"
TCGA.G4.6625	20	30589022	30892433	53	1.1815	LARGE-GAIN	FOCAL	6	"CCM2L,HCK,KIF3B,PLAGL2,POFUT1,TM9SF4"
TCGA.CK.5914.01A	20	30618796	30689073	14	2.3501	LARGE-GAIN	FOCAL	2	"CCM2L,HCK"
TCGA.AG.3909.01A	20	30659438	30749043	26	1.346	LARGE-GAIN	FOCAL	2	"HCK,TM9SF4"
TCGA.AF.2689	20	30682770	30992290	44	1.0749	LARGE-GAIN	FOCAL	6	"ASXL1,HCK,KIF3B,PLAGL2,POFUT1,TM9SF4"
TCGA.CK.5914.01A	20	30697460	30946536	38	1.6302	LARGE-GAIN	FOCAL	5	"ASXL1,KIF3B,PLAGL2,POFUT1,TM9SF4"
TCGA.AA.A00N.01A	20	30816047	30918978	13	0.7734	LARGE-GAIN	FOCAL	2	"KIF3B,POFUT1"
TCGA.AA.A01Q.01A	20	30816047	30918978	12	0.739	LARGE-GAIN	FOCAL	2	"KIF3B,POFUT1"
TCGA.AG.3909.01A	20	30816047	30956783	16	1.3926	LARGE-GAIN	FOCAL	3	"ASXL1,KIF3B,POFUT1"
TCGA.AG.4009.01A	20	30816047	31383167	47	1.5835	LARGE-GAIN	FOCAL	7	"ASXL1,C20orf203,COMMD7,DNMT3B,KIF3B,NOL4L,POFUT1"
TCGA.AA.A00Q.01A	20	30897539	30956783	12	1.4164	LARGE-GAIN	FOCAL	2	"ASXL1,KIF3B"
TCGA.AA.A00D.01A	20	30897539	31040008	21	1.1225	LARGE-GAIN	FOCAL	3	"ASXL1,KIF3B,NOL4L"
TCGA.AA.A00Q.01A	20	31015889	31585370	54	0.992	LARGE-GAIN	FOCAL	7	"ASXL1,C20orf203,COMMD7,DNMT3B,MAPRE1,NOL4L,SUN5"
TCGA.CK.5914.01A	20	31097609	31421486	38	1.2417	LARGE-GAIN	FOCAL	5	"C20orf203,COMMD7,DNMT3B,MAPRE1,NOL4L"
TCGA.AG.A01W.01A	20	31113220	31116135	4	0.7112	LARGE-GAIN	FOCAL	1	NOL4L
TCGA.AG.A01W.01A	20	31139865	31143422	5	0.9952	LARGE-GAIN	FOCAL	1	NOL4L
TCGA.AG.3906.01A	20	31291123	31315682	6	0.8953	LARGE-GAIN	FOCAL	1	COMMD7
TCGA.AG.3909.01A	20	31291123	31434377	32	1.1996	LARGE-GAIN	FOCAL	3	"COMMD7,DNMT3B,MAPRE1"
TCGA.AG.A01W.01A	20	31348928	31357415	8	0.8098	LARGE-GAIN	FOCAL	1	DNMT3B
TCGA.AG.4009.01A	20	31384536	31436416	17	0.7915	LARGE-GAIN	FOCAL	2	"DNMT3B,MAPRE1"
TCGA.AA.A00J.01A	20	31384994	31390136	7	2.7397	LARGE-GAIN	FOCAL	1	DNMT3B
TCGA.AG.3906.01A	20	31387927	31427489	11	0.7863	LARGE-GAIN	FOCAL	2	"DNMT3B,MAPRE1"
TCGA.AA.A00D.01A	20	31387927	31436416	13	0.9421	LARGE-GAIN	FOCAL	2	"DNMT3B,MAPRE1"
TCGA.CK.5914.01A	20	31424389	31571568	31	2.0037	LARGE-GAIN	FOCAL	1	MAPRE1
TCGA.AG.3909.01A	20	31436416	31606804	20	0.7003	LARGE-GAIN	FOCAL	3	"BPIFB2,MAPRE1,SUN5"
TCGA.AA.A00N.01A	20	31455357	31575415	28	0.9382	LARGE-GAIN	FOCAL	1	SUN5
TCGA.AA.A010.01A	20	31455357	31575415	28	0.7575	LARGE-GAIN	FOCAL	1	SUN5
TCGA.AG.4009.01A	20	31571568	31661299	50	1.3402	LARGE-GAIN	FOCAL	4	"BPIFB2,BPIFB3,BPIFB6,SUN5"
TCGA.CK.5914.01A	20	31572861	31611072	25	1.1666	LARGE-GAIN	FOCAL	2	"BPIFB2,SUN5"
TCGA.AA.A00N.01A	20	31588965	31680212	55	0.8181	LARGE-GAIN	FOCAL	5	"BPIFB2,BPIFB3,BPIFB4,BPIFB6,SUN5"
TCGA.AM.5820	20	31593015	31623888	24	0.9935	LARGE-GAIN	FOCAL	2	"BPIFB2,BPIFB6"
TCGA.AA.A010.01A	20	31596330	31619411	15	0.8681	LARGE-GAIN	FOCAL	1	BPIFB2
TCGA.AG.A016.01A	20	31598776	31606050	6	1.4955	LARGE-GAIN	FOCAL	1	BPIFB2
TCGA.A6.3808.01A	20	31598776	31897457	94	1.0011	LARGE-GAIN	FOCAL	8	"BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6"
TCGA.AG.A016.01A	20	31606406	31625318	14	0.9929	LARGE-GAIN	FOCAL	2	"BPIFB2,BPIFB6"
TCGA.AG.3909.01A	20	31607357	31649516	24	1.5066	LARGE-GAIN	FOCAL	3	"BPIFB2,BPIFB3,BPIFB6"
TCGA.CK.5914.01A	20	31619411	31768258	52	1.7038	LARGE-GAIN	FOCAL	4	"BPIFA2,BPIFB3,BPIFB4,BPIFB6"
TCGA.AA.A010.01A	20	31631751	31688169	28	0.7057	LARGE-GAIN	FOCAL	3	"BPIFB3,BPIFB4,BPIFB6"
TCGA.AG.3909.01A	20	31651350	31685406	20	1.1737	LARGE-GAIN	FOCAL	2	"BPIFB3,BPIFB4"
TCGA.AG.4009.01A	20	31670699	31699130	15	0.9969	LARGE-GAIN	FOCAL	1	BPIFB4
TCGA.AG.A016.01A	20	31670699	31887670	43	0.9234	LARGE-GAIN	FOCAL	5	"BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB4"
TCGA.A6.2675	20	31680333	32047392	130	0.9144	LARGE-GAIN	FOCAL	7	"BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB4,CDK5RAP1,SNTA1"
TCGA.AG.A00C.01A	20	31688169	31768258	12	0.7079	LARGE-GAIN	FOCAL	2	"BPIFA2,BPIFB4"
TCGA.AG.A01W.01A	20	31709927	31729632	9	0.9314	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	20	31805306	31830277	14	2.6574	LARGE-GAIN	FOCAL	2	"BPIFA1,BPIFA3"
TCGA.AG.3909.01A	20	31805306	31876500	16	1.792	LARGE-GAIN	FOCAL	3	"BPIFA1,BPIFA3,BPIFB1"
TCGA.AA.A00N.01A	20	31805306	31894669	28	1.0658	LARGE-GAIN	FOCAL	3	"BPIFA1,BPIFA3,BPIFB1"
TCGA.AG.4009.01A	20	31805306	31960395	34	0.6867	LARGE-GAIN	FOCAL	4	"BPIFA1,BPIFA3,BPIFB1,CDK5RAP1"
TCGA.AG.A01W.01A	20	31835153	32141188	19	0.7514	LARGE-GAIN	FOCAL	4	"BPIFB1,CBFA2T2,CDK5RAP1,SNTA1"
TCGA.CK.5914.01A	20	31873833	31876500	2	2.0866	LARGE-GAIN	FOCAL	1	BPIFB1
TCGA.AA.A010.01A	20	31873833	31897457	15	0.7523	LARGE-GAIN	FOCAL	1	BPIFB1
TCGA.CK.5914.01A	20	31877639	31897457	13	1.1624	LARGE-GAIN	FOCAL	1	BPIFB1
TCGA.AG.3909.01A	20	31877639	31958255	17	1.0849	LARGE-GAIN	FOCAL	2	"BPIFB1,CDK5RAP1"
TCGA.AG.A016.01A	20	31888987	31893758	6	1.6868	LARGE-GAIN	FOCAL	1	BPIFB1
TCGA.AG.A016.01A	20	31894669	32232126	31	0.9109	LARGE-GAIN	FOCAL	4	"BPIFB1,CBFA2T2,CDK5RAP1,SNTA1"
TCGA.AG.3906.01A	20	31897457	31984518	14	0.8985	LARGE-GAIN	FOCAL	2	"BPIFB1,CDK5RAP1"
TCGA.CK.5914.01A	20	31946798	31967226	7	1.9954	LARGE-GAIN	FOCAL	1	CDK5RAP1
TCGA.AA.3984	20	31956053	32199871	27	1.0118	LARGE-GAIN	FOCAL	3	"CBFA2T2,CDK5RAP1,SNTA1"
TCGA.AG.A00C.01A	20	31967226	31984518	7	1.0349	LARGE-GAIN	FOCAL	1	CDK5RAP1
TCGA.CK.5914.01A	20	31996258	32161948	7	1.2736	LARGE-GAIN	FOCAL	2	"CBFA2T2,SNTA1"
TCGA.AG.3909.01A	20	31996258	32217498	13	1.2329	LARGE-GAIN	FOCAL	2	"CBFA2T2,SNTA1"
TCGA.CK.5914.01A	20	32194715	32210879	4	2.3359	LARGE-GAIN	FOCAL	1	CBFA2T2
TCGA.CK.5914.01A	20	32211527	32245563	8	1.4819	LARGE-GAIN	FOCAL	2	"CBFA2T2,NECAB3"
TCGA.AG.A016.01A	20	32246225	32295464	12	1.3243	LARGE-GAIN	FOCAL	5	"ACTL10,C20orf144,E2F1,NECAB3,PXMP4"
TCGA.CK.5914.01A	20	32246225	32302410	19	0.9153	LARGE-GAIN	FOCAL	5	"ACTL10,C20orf144,E2F1,NECAB3,PXMP4"
TCGA.AG.3906.01A	20	32258440	32268076	6	1.736	LARGE-GAIN	FOCAL	2	"E2F1,NECAB3"
TCGA.AG.3909.01A	20	32302410	32340938	6	0.7195	LARGE-GAIN	FOCAL	2	"PXMP4,ZNF341"
TCGA.CK.5914.01A	20	32307860	32346470	7	1.6229	LARGE-GAIN	FOCAL	2	"PXMP4,ZNF341"
TCGA.AG.3909.01A	20	32344942	32371499	7	1.1905	LARGE-GAIN	FOCAL	1	ZNF341
TCGA.CK.5914.01A	20	32349620	32369057	4	2.3438	LARGE-GAIN	FOCAL	1	ZNF341
TCGA.CK.5914.01A	20	32371499	33037149	45	1.3424	LARGE-GAIN	FOCAL	7	"AHCY,ASIP,CHMP4B,EIF2S2,ITCH,RALY,ZNF341"
TCGA.AG.4009.01A	20	32439836	33054124	37	1.0365	LARGE-GAIN	FOCAL	6	"AHCY,ASIP,CHMP4B,EIF2S2,ITCH,RALY"
TCGA.AA.3697	20	32495584	33401706	126	1.0299	LARGE-GAIN	FOCAL	10	"AHCY,ASIP,DYNLRB1,EIF2S2,ITCH,MAP1LC3A,NCOA6,PIGU,RALY,TP53INP2"
TCGA.DY.A1DD	20	32638550	33078102	47	1.6333	LARGE-GAIN	FOCAL	5	"AHCY,ASIP,EIF2S2,ITCH,RALY"
TCGA.AG.A00C.01A	20	32666242	32850579	11	0.9325	LARGE-GAIN	FOCAL	3	"ASIP,EIF2S2,RALY"
TCGA.AG.3742	20	32780821	32955422	18	1.321	LARGE-GAIN	FOCAL	3	"AHCY,ASIP,ITCH"
TCGA.AM.5820	20	32842532	32889703	8	0.842	LARGE-GAIN	FOCAL	2	"AHCY,ASIP"
TCGA.AG.3909.01A	20	32883170	33054124	14	0.9337	LARGE-GAIN	FOCAL	2	"AHCY,ITCH"
TCGA.AA.A00Q.01A	20	32981555	33092085	23	1.2975	LARGE-GAIN	FOCAL	1	ITCH
TCGA.A6.2675	20	32998653	33078102	11	1.5498	LARGE-GAIN	FOCAL	1	ITCH
TCGA.AD.6965	20	33036481	33192745	16	0.7031	LARGE-GAIN	FOCAL	4	"DYNLRB1,ITCH,MAP1LC3A,PIGU"
TCGA.AG.A01W.01A	20	33041168	33086559	26	0.8238	LARGE-GAIN	FOCAL	1	ITCH
TCGA.AA.A00D.01A	20	33049870	33092085	12	1.4166	LARGE-GAIN	FOCAL	1	ITCH
TCGA.AG.4009.01A	20	33080253	33572410	85	1.028	LARGE-GAIN	FOCAL	10	"ACSS2,DYNLRB1,GGT7,GSS,ITCH,MAP1LC3A,MYH7B,NCOA6,PIGU,TP53INP2"
TCGA.AA.A00Q.01A	20	33095463	33148622	9	0.8088	LARGE-GAIN	FOCAL	4	"DYNLRB1,ITCH,MAP1LC3A,PIGU"
TCGA.AG.3909.01A	20	33104186	33233047	17	0.9009	LARGE-GAIN	FOCAL	3	"DYNLRB1,MAP1LC3A,PIGU"
TCGA.AA.A00Q.01A	20	33162867	33244915	10	1.4842	LARGE-GAIN	FOCAL	1	PIGU
TCGA.AG.A01W.01A	20	33303108	33331822	11	0.6848	LARGE-GAIN	FOCAL	1	NCOA6
TCGA.AG.3909.01A	20	33315076	33369876	14	1.2317	LARGE-GAIN	FOCAL	1	NCOA6
TCGA.AA.A00N.01A	20	33328138	33369876	11	0.8802	LARGE-GAIN	FOCAL	1	NCOA6
TCGA.AA.3697	20	33403583	33478380	15	0.7187	LARGE-GAIN	FOCAL	3	"ACSS2,GGT7,NCOA6"
TCGA.AA.A024.01A	20	33442280	33442557	2	5.2763	LARGE-GAIN	FOCAL	1	GGT7
TCGA.AG.3909.01A	20	33500853	33501503	3	0.6815	LARGE-GAIN	FOCAL	1	ACSS2
TCGA.AG.3909.01A	20	33501835	33519690	14	1.2063	LARGE-GAIN	FOCAL	2	"ACSS2,GSS"
TCGA.AG.3909.01A	20	33523322	33567424	11	0.7439	LARGE-GAIN	FOCAL	2	"GSS,MYH7B"
TCGA.AG.3909.01A	20	33597951	33734918	22	1.183	LARGE-GAIN	FOCAL	2	"EDEM2,TRPC4AP"
TCGA.AG.A01W.01A	20	33668813	33678590	11	1.0667	LARGE-GAIN	FOCAL	1	TRPC4AP
TCGA.AM.5820	20	33703606	33708889	6	0.7172	LARGE-GAIN	FOCAL	1	EDEM2
TCGA.AG.A01W.01A	20	33741741	33752086	6	1.1658	LARGE-GAIN	FOCAL	0	None
TCGA.A6.2675	20	33747330	33801282	12	1.3984	LARGE-GAIN	FOCAL	1	PROCR
TCGA.AG.3909.01A	20	33891691	33999665	10	1.1867	LARGE-GAIN	FOCAL	1	UQCC1
TCGA.AA.A010.01A	20	33961946	34205645	61	0.738	LARGE-GAIN	FOCAL	6	"C20orf173,CEP250,ERGIC3,GDF5,SPAG4,UQCC1"
TCGA.AG.3909.01A	20	34050146	34060451	9	0.9033	LARGE-GAIN	FOCAL	1	CEP250
TCGA.AA.A00L.01A	20	34050146	34136211	40	1.2518	LARGE-GAIN	FOCAL	3	"C20orf173,CEP250,ERGIC3"
TCGA.AG.3909.01A	20	34061181	34116004	26	1.3779	LARGE-GAIN	FOCAL	2	"C20orf173,CEP250"
TCGA.AA.3861.01A	20	34061181	34116563	28	0.943	LARGE-GAIN	FOCAL	2	"C20orf173,CEP250"
TCGA.AA.A00N.01A	20	34061181	34129799	29	0.8624	LARGE-GAIN	FOCAL	3	"C20orf173,CEP250,ERGIC3"
TCGA.AG.A016.01A	20	34142051	34205377	5	0.9403	LARGE-GAIN	FOCAL	2	"ERGIC3,SPAG4"
TCGA.AG.A016.01A	20	34205645	34218308	11	1.4941	LARGE-GAIN	FOCAL	2	"CPNE1,SPAG4"
TCGA.AA.A00L.01A	20	34208537	34288649	24	0.9115	LARGE-GAIN	FOCAL	5	"CPNE1,NFS1,RBM12,ROMO1,SPAG4"
TCGA.AG.A016.01A	20	34218599	34278298	14	0.8876	LARGE-GAIN	FOCAL	3	"CPNE1,NFS1,RBM12"
TCGA.AA.A010.01A	20	34257475	34288649	13	0.8899	LARGE-GAIN	FOCAL	2	"NFS1,ROMO1"
TCGA.AG.A016.01A	20	34284264	34300922	10	1.5104	LARGE-GAIN	FOCAL	3	"NFS1,RBM39,ROMO1"
TCGA.AA.A00L.01A	20	34292356	34519190	29	1.2566	LARGE-GAIN	FOCAL	2	"PHF20,RBM39"
TCGA.CK.5914.01A	20	34300922	34389390	16	1.1267	LARGE-GAIN	FOCAL	2	"PHF20,RBM39"
TCGA.AG.4009.01A	20	34309614	34328674	8	0.8476	LARGE-GAIN	FOCAL	1	RBM39
TCGA.AG.3909.01A	20	34317161	34328674	5	0.9229	LARGE-GAIN	FOCAL	1	RBM39
TCGA.AG.4009.01A	20	34389390	34505200	12	1.3318	LARGE-GAIN	FOCAL	1	PHF20
TCGA.AG.3909.01A	20	34389390	34526580	15	1.3366	LARGE-GAIN	FOCAL	1	PHF20
TCGA.CK.5914.01A	20	34430478	34541676	18	1.6883	LARGE-GAIN	FOCAL	2	"PHF20,SCAND1"
TCGA.AG.4009.01A	20	34515665	34568344	10	0.9455	LARGE-GAIN	FOCAL	3	"CNBD2,PHF20,SCAND1"
TCGA.AA.A00L.01A	20	34526580	34843459	40	0.9602	LARGE-GAIN	FOCAL	5	"AAR2,CNBD2,EPB41L1,PHF20,SCAND1"
TCGA.AG.3909.01A	20	34528746	34800147	30	0.8386	LARGE-GAIN	FOCAL	4	"CNBD2,EPB41L1,PHF20,SCAND1"
TCGA.AA.3984	20	34536054	34595435	9	0.9845	LARGE-GAIN	FOCAL	3	"CNBD2,PHF20,SCAND1"
TCGA.CK.5914.01A	20	34556619	34766472	16	1.2403	LARGE-GAIN	FOCAL	2	"CNBD2,EPB41L1"
TCGA.AG.4009.01A	20	34611486	34763424	4	1.1293	LARGE-GAIN	FOCAL	2	"CNBD2,EPB41L1"
TCGA.AG.A036.01A	20	34640545	34783436	26	1.2024	LARGE-GAIN	FOCAL	1	EPB41L1
TCGA.AG.4009.01A	20	34765836	35060081	23	1.5166	LARGE-GAIN	FOCAL	3	"AAR2,DLGAP4,EPB41L1"
TCGA.CK.5914.01A	20	34770134	34843459	20	2.065	LARGE-GAIN	FOCAL	2	"AAR2,EPB41L1"
TCGA.AG.3909.01A	20	34802231	34843459	9	1.4932	LARGE-GAIN	FOCAL	2	"AAR2,EPB41L1"
TCGA.AG.A036.01A	20	34814568	35117932	61	1.5707	LARGE-GAIN	FOCAL	3	"AAR2,DLGAP4,EPB41L1"
TCGA.CK.5914.01A	20	35060081	35090887	7	1.5048	LARGE-GAIN	FOCAL	1	DLGAP4
TCGA.AA.A00D.01A	20	35075073	35399748	47	1.029	LARGE-GAIN	FOCAL	8	"C20orf24,DLGAP4,DSN1,MYL9,NDRG3,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.AG.A036.01A	20	35122874	35176985	13	1.9073	LARGE-GAIN	FOCAL	2	"DLGAP4,MYL9"
TCGA.CK.5914.01A	20	35125108	35242239	17	0.9155	LARGE-GAIN	FOCAL	6	"C20orf24,DLGAP4,MYL9,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.AG.3891.01A	20	35177463	35399748	38	0.8297	LARGE-GAIN	FOCAL	7	"C20orf24,DSN1,MYL9,NDRG3,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.AG.A036.01A	20	35181478	35235785	16	1.5675	LARGE-GAIN	FOCAL	3	"C20orf24,TGIF2,TGIF2-C20orf24"
TCGA.CK.5914.01A	20	35242657	35283134	8	1.7429	LARGE-GAIN	FOCAL	2	"NDRG3,SLA2"
TCGA.AG.3909.01A	20	35243587	35284707	8	1.3151	LARGE-GAIN	FOCAL	2	"NDRG3,SLA2"
TCGA.AA.A00N.01A	20	35260947	35283134	6	1.1297	LARGE-GAIN	FOCAL	2	"NDRG3,SLA2"
TCGA.AM.5820	20	35401298	35512647	14	0.7295	LARGE-GAIN	FOCAL	3	"DSN1,SOGA1,TLDC2"
TCGA.CK.5914.01A	20	35406104	35579798	37	1.4096	LARGE-GAIN	FOCAL	3	"SAMHD1,SOGA1,TLDC2"
TCGA.AG.3909.01A	20	35457406	35563404	20	1.2063	LARGE-GAIN	FOCAL	3	"SAMHD1,SOGA1,TLDC2"
TCGA.AG.3891.01A	20	35506253	35731049	42	0.905	LARGE-GAIN	FOCAL	4	"MROH8,RBL1,SAMHD1,TLDC2"
TCGA.AA.A00D.01A	20	35540808	35717353	29	1.1527	LARGE-GAIN	FOCAL	2	"RBL1,SAMHD1"
TCGA.AG.A00C.01A	20	35575073	35828776	48	0.8992	LARGE-GAIN	FOCAL	4	"MROH8,RBL1,RPN2,SAMHD1"
TCGA.AG.3906.01A	20	35627122	35635794	3	1.8652	LARGE-GAIN	FOCAL	1	RBL1
TCGA.AG.4009.01A	20	35646626	35743524	24	0.7832	LARGE-GAIN	FOCAL	2	"MROH8,RBL1"
TCGA.AG.3891.01A	20	35736935	35772078	13	1.5645	LARGE-GAIN	FOCAL	1	MROH8
TCGA.AG.3906.01A	20	35736935	35783419	14	1.7937	LARGE-GAIN	FOCAL	1	MROH8
TCGA.AG.3891.01A	20	35776137	35783419	2	0.9246	LARGE-GAIN	FOCAL	1	MROH8
TCGA.AG.4009.01A	20	35802381	35944661	25	1.1242	LARGE-GAIN	FOCAL	4	"GHRH,MANBAL,MROH8,RPN2"
TCGA.CK.5914.01A	20	35807584	35929629	24	2.0499	LARGE-GAIN	FOCAL	4	"GHRH,MANBAL,MROH8,RPN2"
TCGA.AG.3909.01A	20	35826746	35944661	23	1.3736	LARGE-GAIN	FOCAL	3	"GHRH,MANBAL,RPN2"
TCGA.CK.5914.01A	20	35930596	36150730	16	0.8563	LARGE-GAIN	FOCAL	4	"BLCAP,MANBAL,NNAT,SRC"
TCGA.AA.A010.01A	20	36031532	36322443	6	1.206	LARGE-GAIN	FOCAL	4	"BLCAP,CTNNBL1,NNAT,SRC"
TCGA.AG.4009.01A	20	36147322	36974883	79	1.0127	LARGE-GAIN	FOCAL	10	"BLCAP,BPI,CTNNBL1,KIAA1755,LBP,NNAT,RPRD1B,TGM2,TTI1,VSTM2L"
TCGA.CK.5914.01A	20	36151016	36560010	18	2.0016	LARGE-GAIN	FOCAL	4	"BLCAP,CTNNBL1,NNAT,VSTM2L"
TCGA.AA.A00N.01A	20	36322443	36470702	13	0.9935	LARGE-GAIN	FOCAL	1	CTNNBL1
TCGA.AG.3909.01A	20	36322443	36560010	16	1.1732	LARGE-GAIN	FOCAL	2	"CTNNBL1,VSTM2L"
TCGA.AM.5820	20	36461567	36561310	49	0.8492	LARGE-GAIN	FOCAL	2	"CTNNBL1,VSTM2L"
TCGA.AA.A010.01A	20	36488614	36851902	40	0.7672	LARGE-GAIN	FOCAL	6	"CTNNBL1,KIAA1755,RPRD1B,TGM2,TTI1,VSTM2L"
TCGA.CK.5914.01A	20	36561886	36846615	34	1.4193	LARGE-GAIN	FOCAL	5	"KIAA1755,RPRD1B,TGM2,TTI1,VSTM2L"
TCGA.AG.3909.01A	20	36676708	36760693	8	1.2233	LARGE-GAIN	FOCAL	2	"RPRD1B,TGM2"
TCGA.AA.A00N.01A	20	36694464	36992578	55	0.9294	LARGE-GAIN	FOCAL	5	"BPI,KIAA1755,LBP,RPRD1B,TGM2"
TCGA.AG.3909.01A	20	36841417	36979177	33	1.5082	LARGE-GAIN	FOCAL	3	"BPI,KIAA1755,LBP"
TCGA.CK.5914.01A	20	36848004	36948544	22	1.9245	LARGE-GAIN	FOCAL	2	"BPI,KIAA1755"
TCGA.CK.5914.01A	20	36952233	36983681	13	2.6768	LARGE-GAIN	FOCAL	2	"BPI,LBP"
TCGA.CK.5914.01A	20	36989303	36999317	6	1.4107	LARGE-GAIN	FOCAL	1	LBP
TCGA.AA.3930.01A	20	36989303	37121521	12	0.7068	LARGE-GAIN	FOCAL	2	"LBP,RALGAPB"
TCGA.AA.A00D.01A	20	36989303	37161326	23	0.9708	LARGE-GAIN	FOCAL	2	"LBP,RALGAPB"
TCGA.AG.A00C.01A	20	36993181	37153999	18	0.8367	LARGE-GAIN	FOCAL	2	"LBP,RALGAPB"
TCGA.CK.5914.01A	20	36999864	37154496	15	0.8791	LARGE-GAIN	FOCAL	2	"LBP,RALGAPB"
TCGA.AA.3875	20	37010805	37024981	7	1.1346	LARGE-GAIN	FOCAL	0	None
TCGA.G4.6307	20	37024833	37025797	3	1.648	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3869	20	37129240	39520554	894	0.7354	LARGE-GAIN	FOCAL	9	"ACTR5,ADIG,ARHGAP40,DHX35,FAM83D,MAFB,PPP1R16B,RALGAPB,SLC32A1"
TCGA.DC.6157	20	37144695	37168468	5	1.6711	LARGE-GAIN	FOCAL	1	RALGAPB
TCGA.CK.5914.01A	20	37159751	37177284	7	1.6167	LARGE-GAIN	FOCAL	1	RALGAPB
TCGA.AG.3909.01A	20	37159751	37214625	19	1.0844	LARGE-GAIN	FOCAL	2	"ADIG,RALGAPB"
TCGA.AA.A00D.01A	20	37163666	37590939	37	0.6838	LARGE-GAIN	FOCAL	7	"ACTR5,ADIG,ARHGAP40,FAM83D,PPP1R16B,RALGAPB,SLC32A1"
TCGA.AG.4009.01A	20	37169647	37214625	15	0.9731	LARGE-GAIN	FOCAL	2	"ADIG,RALGAPB"
TCGA.CK.5914.01A	20	37179687	37216716	14	1.9801	LARGE-GAIN	FOCAL	2	"ADIG,RALGAPB"
TCGA.AA.3982	20	37198857	37360943	55	1.065	LARGE-GAIN	FOCAL	4	"ADIG,ARHGAP40,RALGAPB,SLC32A1"
TCGA.CK.5914.01A	20	37255591	37274643	10	1.4883	LARGE-GAIN	FOCAL	1	ARHGAP40
TCGA.CK.5914.01A	20	37275588	37601148	32	1.0792	LARGE-GAIN	FOCAL	6	"ACTR5,ARHGAP40,DHX35,FAM83D,PPP1R16B,SLC32A1"
TCGA.AG.3742	20	37283505	37294882	4	2.0182	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	20	37378626	37396090	7	0.8632	LARGE-GAIN	FOCAL	1	ACTR5
TCGA.AG.4009.01A	20	37394834	37667076	37	0.9323	LARGE-GAIN	FOCAL	4	"ACTR5,DHX35,FAM83D,PPP1R16B"
TCGA.AA.3982	20	37469255	37906740	113	0.9926	LARGE-GAIN	FOCAL	3	"DHX35,FAM83D,PPP1R16B"
TCGA.AA.A00D.01A	20	37597676	37620026	5	1.3598	LARGE-GAIN	FOCAL	1	DHX35
TCGA.CK.5914.01A	20	37612282	39830656	61	1.8313	LARGE-GAIN	FOCAL	5	"DHX35,MAFB,PLCG1,TOP1,ZHX3"
TCGA.AG.3909.01A	20	37617424	37657004	15	1.2172	LARGE-GAIN	FOCAL	1	DHX35
TCGA.AA.A017.01A	20	37652280	40054667	64	1.2723	LARGE-GAIN	FOCAL	8	"CHD6,DHX35,EMILIN3,LPIN3,MAFB,PLCG1,TOP1,ZHX3"
TCGA.AA.3941	20	38239990	38252158	11	0.7921	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	38343783	41943588	1452	0.8627	LARGE-GAIN	FOCAL	8	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,PTPRT,TOP1,ZHX3"
TCGA.AA.3941	20	39008064	40469367	438	0.8243	LARGE-GAIN	FOCAL	7	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,TOP1,ZHX3"
TCGA.AA.3679	20	39038827	39223486	65	0.9041	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3679	20	39228783	39720829	202	1.3469	LARGE-GAIN	FOCAL	2	"MAFB,TOP1"
TCGA.AG.A01W.01A	20	39413824	39479222	19	0.858	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	20	39502014	39613289	25	0.8082	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.4614	20	39663328	42167660	1012	0.7668	LARGE-GAIN	FOCAL	9	"CHD6,EMILIN3,L3MBTL1,LPIN3,PLCG1,PTPRT,SRSF6,TOP1,ZHX3"
TCGA.AA.A00Q.01A	20	39689982	39751788	19	1.4619	LARGE-GAIN	FOCAL	1	TOP1
TCGA.AA.A00L.01A	20	39689982	39797681	29	1.1854	LARGE-GAIN	FOCAL	2	"PLCG1,TOP1"
TCGA.AG.4009.01A	20	39689982	39974397	38	1.6783	LARGE-GAIN	FOCAL	4	"LPIN3,PLCG1,TOP1,ZHX3"
TCGA.AG.3909.01A	20	39704769	39974397	37	1.2283	LARGE-GAIN	FOCAL	4	"LPIN3,PLCG1,TOP1,ZHX3"
TCGA.AA.A00D.01A	20	39706149	39788209	18	1.0028	LARGE-GAIN	FOCAL	2	"PLCG1,TOP1"
TCGA.AA.3679	20	39743249	41012291	477	0.827	LARGE-GAIN	FOCAL	7	"CHD6,EMILIN3,LPIN3,PLCG1,PTPRT,TOP1,ZHX3"
TCGA.AA.A00Q.01A	20	39788209	42213444	107	0.9789	LARGE-GAIN	FOCAL	9	"CHD6,EMILIN3,L3MBTL1,LPIN3,PLCG1,PTPRT,SGK2,SRSF6,ZHX3"
TCGA.AA.A00N.01A	20	39791046	39830656	18	1.0549	LARGE-GAIN	FOCAL	2	"PLCG1,ZHX3"
TCGA.AA.A01C.01A	20	39792308	42194929	116	1.1299	LARGE-GAIN	FOCAL	9	"CHD6,EMILIN3,L3MBTL1,LPIN3,PLCG1,PTPRT,SGK2,SRSF6,ZHX3"
TCGA.AG.A01L.01A	20	39793554	40040734	33	1.0211	LARGE-GAIN	FOCAL	5	"CHD6,EMILIN3,LPIN3,PLCG1,ZHX3"
TCGA.AG.A016.01A	20	39794847	40033195	30	1.41	LARGE-GAIN	FOCAL	5	"CHD6,EMILIN3,LPIN3,PLCG1,ZHX3"
TCGA.AA.A00L.01A	20	39798030	40127877	56	0.717	LARGE-GAIN	FOCAL	5	"CHD6,EMILIN3,LPIN3,PLCG1,ZHX3"
TCGA.CK.5914.01A	20	39974397	40040734	19	1.1092	LARGE-GAIN	FOCAL	3	"CHD6,EMILIN3,LPIN3"
TCGA.AG.4009.01A	20	39976162	39993623	16	1.0571	LARGE-GAIN	FOCAL	2	"EMILIN3,LPIN3"
TCGA.AG.3906.01A	20	39977686	39993623	14	1.4442	LARGE-GAIN	FOCAL	2	"EMILIN3,LPIN3"
TCGA.AG.4009.01A	20	40033195	40126723	30	1.6311	LARGE-GAIN	FOCAL	1	CHD6
TCGA.AA.A00N.01A	20	40033195	41514415	68	1.2697	LARGE-GAIN	FOCAL	2	"CHD6,PTPRT"
TCGA.AG.3909.01A	20	40033195	42086667	68	1.4914	LARGE-GAIN	FOCAL	3	"CHD6,PTPRT,SRSF6"
TCGA.CK.4948.01B	20	40041923	40161712	32	0.7776	LARGE-GAIN	FOCAL	1	CHD6
TCGA.CK.5914.01A	20	40041923	42086667	67	2.3318	LARGE-GAIN	FOCAL	3	"CHD6,PTPRT,SRSF6"
TCGA.AA.A017.01A	20	40065844	40125994	19	1.8103	LARGE-GAIN	FOCAL	1	CHD6
TCGA.AA.A017.01A	20	40126723	41408798	35	1.2649	LARGE-GAIN	FOCAL	2	"CHD6,PTPRT"
TCGA.AG.4009.01A	20	40127877	42158887	45	0.8752	LARGE-GAIN	FOCAL	4	"CHD6,L3MBTL1,PTPRT,SRSF6"
TCGA.AA.3941	20	40512765	40603368	58	0.7229	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	20	40678429	40796160	79	0.7558	LARGE-GAIN	FOCAL	1	PTPRT
TCGA.A6.2675	20	40845279	40931327	40	1.2616	LARGE-GAIN	FOCAL	1	PTPRT
TCGA.A6.2675	20	40931422	42671432	748	0.9525	LARGE-GAIN	FOCAL	8	"GTSF1L,IFT52,L3MBTL1,MYBL2,PTPRT,SGK2,SRSF6,TOX2"
TCGA.AA.3696	20	41187924	41243235	35	0.8341	LARGE-GAIN	FOCAL	1	PTPRT
TCGA.AA.3941	20	41523039	41743376	80	0.7085	LARGE-GAIN	FOCAL	1	PTPRT
TCGA.AA.A00L.01A	20	42088361	42169376	19	0.8321	LARGE-GAIN	FOCAL	2	"L3MBTL1,SRSF6"
TCGA.CK.5914.01A	20	42142099	42157852	7	1.2674	LARGE-GAIN	FOCAL	1	L3MBTL1
TCGA.AG.3909.01A	20	42157265	42204817	22	1.1882	LARGE-GAIN	FOCAL	2	"L3MBTL1,SGK2"
TCGA.CK.5914.01A	20	42158887	42168784	10	2.1766	LARGE-GAIN	FOCAL	1	L3MBTL1
TCGA.AG.4009.01A	20	42159382	42213444	20	1.2819	LARGE-GAIN	FOCAL	2	"L3MBTL1,SGK2"
TCGA.CK.5914.01A	20	42169376	42204817	11	1.4417	LARGE-GAIN	FOCAL	2	"L3MBTL1,SGK2"
TCGA.AA.3856	20	42171481	42317418	34	1.0829	LARGE-GAIN	FOCAL	3	"IFT52,MYBL2,SGK2"
TCGA.AA.A00L.01A	20	42194929	42354900	38	1.1302	LARGE-GAIN	FOCAL	4	"GTSF1L,IFT52,MYBL2,SGK2"
TCGA.AG.3906.01A	20	42208560	42315480	19	1.0321	LARGE-GAIN	FOCAL	3	"IFT52,MYBL2,SGK2"
TCGA.AA.A00D.01A	20	42223287	42328345	19	1.171	LARGE-GAIN	FOCAL	2	"IFT52,MYBL2"
TCGA.AA.A00Q.01A	20	42223287	42328345	19	1.3122	LARGE-GAIN	FOCAL	2	"IFT52,MYBL2"
TCGA.AG.4009.01A	20	42223287	42331082	20	0.7815	LARGE-GAIN	FOCAL	2	"IFT52,MYBL2"
TCGA.AG.3891.01A	20	42225017	42311390	15	0.9302	LARGE-GAIN	FOCAL	2	"IFT52,MYBL2"
TCGA.AG.3909.01A	20	42247533	42635215	24	1.0265	LARGE-GAIN	FOCAL	4	"GTSF1L,IFT52,MYBL2,TOX2"
TCGA.AA.A00N.01A	20	42320760	42679908	14	0.9027	LARGE-GAIN	FOCAL	3	"GTSF1L,MYBL2,TOX2"
TCGA.AG.4009.01A	20	42333821	42354900	7	1.3667	LARGE-GAIN	FOCAL	2	"GTSF1L,MYBL2"
TCGA.AG.4009.01A	20	42574512	42697241	9	1.8944	LARGE-GAIN	FOCAL	1	TOX2
TCGA.AG.4009.01A	20	42743380	42806511	5	1.165	LARGE-GAIN	FOCAL	1	JPH2
TCGA.AA.A00L.01A	20	42806511	43108588	30	0.755	LARGE-GAIN	FOCAL	8	"C20orf62,FITM2,GDAP1L1,HNF4A,JPH2,OSER1,R3HDML,TTPAL"
TCGA.AG.4009.01A	20	42814950	43142505	42	2.0577	LARGE-GAIN	FOCAL	9	"C20orf62,FITM2,GDAP1L1,HNF4A,JPH2,OSER1,R3HDML,SERINC3,TTPAL"
TCGA.AA.A00L.01A	20	43112930	43251162	19	1.2115	LARGE-GAIN	FOCAL	4	"ADA,PKIG,SERINC3,TTPAL"
TCGA.AG.4009.01A	20	43150475	43251451	8	1.6403	LARGE-GAIN	FOCAL	3	"ADA,PKIG,SERINC3"
TCGA.AA.A00N.01A	20	43150475	43257646	12	0.8205	LARGE-GAIN	FOCAL	3	"ADA,PKIG,SERINC3"
TCGA.AG.3909.01A	20	43150475	43399867	23	1.2753	LARGE-GAIN	FOCAL	6	"ADA,KCNK15,PKIG,RIMS4,SERINC3,WISP2"
TCGA.AA.3679	20	43337932	43395579	19	1.4681	LARGE-GAIN	FOCAL	3	"KCNK15,RIMS4,WISP2"
TCGA.AZ.6606	20	43503037	43548122	11	1.209	LARGE-GAIN	FOCAL	2	"PABPC1L,YWHAB"
TCGA.AG.3909.01A	20	43545345	43567258	11	0.9043	LARGE-GAIN	FOCAL	1	PABPC1L
TCGA.AG.3909.01A	20	43615721	43739025	12	0.9018	LARGE-GAIN	FOCAL	3	"KCNS1,STK4,WFDC5"
TCGA.AA.A00N.01A	20	43739025	43883041	13	0.972	LARGE-GAIN	FOCAL	6	"PI3,SEMG1,SEMG2,SLPI,WFDC12,WFDC5"
TCGA.AG.3909.01A	20	43743586	43926528	14	1.2851	LARGE-GAIN	FOCAL	7	"MATN4,PI3,SEMG1,SEMG2,SLPI,WFDC12,WFDC5"
TCGA.CK.5914.01A	20	43752498	43883041	11	2.2423	LARGE-GAIN	FOCAL	5	"PI3,SEMG1,SEMG2,SLPI,WFDC12"
TCGA.AG.4009.01A	20	43803507	43883041	10	1.8078	LARGE-GAIN	FOCAL	4	"PI3,SEMG1,SEMG2,SLPI"
TCGA.AA.3982	20	43913254	44087072	67	0.8477	LARGE-GAIN	FOCAL	7	"DBNDD2,MATN4,PIGT,RBPJL,SDC4,SYS1,TP53TG5"
TCGA.AG.4009.01A	20	43922340	43926528	2	1.2104	LARGE-GAIN	FOCAL	1	MATN4
TCGA.CK.5914.01A	20	43922340	44141259	45	1.1057	LARGE-GAIN	FOCAL	9	"DBNDD2,MATN4,PIGT,RBPJL,SDC4,SPINT3,SYS1,TP53TG5,WFDC2"
TCGA.AZ.4614	20	43952423	43967309	9	2.2909	LARGE-GAIN	FOCAL	1	SDC4
TCGA.AG.4009.01A	20	43994194	44048753	14	1.3722	LARGE-GAIN	FOCAL	4	"DBNDD2,PIGT,SYS1,TP53TG5"
TCGA.AG.4009.01A	20	44049985	44238698	22	1.7693	LARGE-GAIN	FOCAL	8	"EPPIN,EPPIN-WFDC6,PIGT,SPINT3,WFDC2,WFDC6,WFDC8,WFDC9"
TCGA.AA.A00N.01A	20	44144114	44258407	20	0.8444	LARGE-GAIN	FOCAL	7	"EPPIN,EPPIN-WFDC6,SPINT3,WFDC10A,WFDC6,WFDC8,WFDC9"
TCGA.CK.5914.01A	20	44144114	44258407	20	2.1771	LARGE-GAIN	FOCAL	7	"EPPIN,EPPIN-WFDC6,SPINT3,WFDC10A,WFDC6,WFDC8,WFDC9"
TCGA.AG.3909.01A	20	44163001	44258407	17	1.4807	LARGE-GAIN	FOCAL	6	"EPPIN,EPPIN-WFDC6,WFDC10A,WFDC6,WFDC8,WFDC9"
TCGA.AG.4009.01A	20	44258407	44279089	5	0.8806	LARGE-GAIN	FOCAL	3	"WFDC10A,WFDC11,WFDC9"
TCGA.AG.3909.01A	20	44313429	44405663	12	0.9929	LARGE-GAIN	FOCAL	4	"SPINT4,WFDC10B,WFDC13,WFDC3"
TCGA.AA.A00L.01A	20	44429667	44444424	11	1.3462	LARGE-GAIN	FOCAL	2	"DNTTIP1,UBE2C"
TCGA.AG.A01L.01A	20	44468993	44521345	19	0.6796	LARGE-GAIN	FOCAL	7	"ACOT8,CTSA,NEURL2,SNX21,SPATA25,ZSWIM1,ZSWIM3"
TCGA.AA.A00N.01A	20	44483746	44486438	3	1.372	LARGE-GAIN	FOCAL	2	"ACOT8,ZSWIM3"
TCGA.AG.4009.01A	20	44663535	44676045	13	0.8665	LARGE-GAIN	FOCAL	1	SLC12A5
TCGA.AG.4009.01A	20	44746922	44803454	9	1.8599	LARGE-GAIN	FOCAL	2	"CD40,CDH22"
TCGA.AG.4009.01A	20	44806548	45644768	62	1.168	LARGE-GAIN	FOCAL	9	"CDH22,ELMO2,EYA2,OCSTAMP,SLC13A3,SLC2A10,SLC35C2,TP53RK,ZNF334"
TCGA.AA.A00N.01A	20	45173965	45852939	45	0.8577	LARGE-GAIN	FOCAL	6	"EYA2,OCSTAMP,SLC13A3,SLC2A10,TP53RK,ZMYND8"
TCGA.CK.5914.01A	20	45179081	45852939	44	1.9756	LARGE-GAIN	FOCAL	6	"EYA2,OCSTAMP,SLC13A3,SLC2A10,TP53RK,ZMYND8"
TCGA.DM.A285	20	45476573	45519804	23	1.2066	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3869	20	45519804	47825886	897	0.7517	LARGE-GAIN	FOCAL	8	"ARFGEF2,CSE1L,EYA2,NCOA3,PREX1,STAU1,SULF2,ZMYND8"
TCGA.DM.A285	20	45533482	46636527	435	0.7092	LARGE-GAIN	FOCAL	4	"EYA2,NCOA3,SULF2,ZMYND8"
TCGA.AA.3955	20	45603571	45634269	19	0.9552	LARGE-GAIN	FOCAL	1	EYA2
TCGA.AA.3679	20	45625020	46425575	270	1.2036	LARGE-GAIN	FOCAL	4	"EYA2,NCOA3,SULF2,ZMYND8"
TCGA.AA.3955	20	45635140	47195509	635	1.2408	LARGE-GAIN	FOCAL	4	"EYA2,NCOA3,SULF2,ZMYND8"
TCGA.AG.3891.01A	20	45912252	45985327	9	0.8658	LARGE-GAIN	FOCAL	1	ZMYND8
TCGA.AA.A00Q.01A	20	45920506	46275796	21	1.3204	LARGE-GAIN	FOCAL	2	"NCOA3,ZMYND8"
TCGA.AA.A00Q.01A	20	46277707	46385884	25	0.9697	LARGE-GAIN	FOCAL	2	"NCOA3,SULF2"
TCGA.AA.A01Q.01A	20	46290285	46300903	8	0.9368	LARGE-GAIN	FOCAL	1	SULF2
TCGA.AA.A010.01A	20	46290285	47364284	54	0.6966	LARGE-GAIN	FOCAL	2	"PREX1,SULF2"
TCGA.AA.3679	20	46431976	46468174	17	0.8452	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3679	20	46469316	46489813	12	1.3348	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3679	20	46592491	48212305	599	1.6711	LARGE-GAIN	FOCAL	8	"ARFGEF2,CSE1L,DDX27,KCNB1,PREX1,PTGIS,STAU1,ZNFX1"
TCGA.AD.A5EK	20	46641418	46962356	189	1.0212	LARGE-GAIN	FOCAL	0	None
TCGA.DC.6160.01A	20	46675764	48240930	199	1.0995	LARGE-GAIN	FOCAL	8	"ARFGEF2,CSE1L,DDX27,KCNB1,PREX1,PTGIS,STAU1,ZNFX1"
TCGA.AG.3898	20	46853141	46863911	11	0.9751	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	20	47244028	47364284	36	1.1548	LARGE-GAIN	FOCAL	1	PREX1
TCGA.AA.A00N.01A	20	47585652	47630059	18	0.96	LARGE-GAIN	FOCAL	1	ARFGEF2
TCGA.AA.A01Q.01A	20	48129576	48166553	7	0.729	LARGE-GAIN	FOCAL	1	PTGIS
TCGA.CK.5914.01A	20	48129576	48491193	26	1.8619	LARGE-GAIN	FOCAL	3	"B4GALT5,PTGIS,SLC9A8"
TCGA.AA.3679	20	48220011	48618444	114	0.8996	LARGE-GAIN	FOCAL	5	"B4GALT5,RNF114,SLC9A8,SNAI1,SPATA2"
TCGA.DC.6157	20	48221678	48737513	123	1.0667	LARGE-GAIN	FOCAL	7	"B4GALT5,RNF114,SLC9A8,SNAI1,SPATA2,TMEM189-UBE2V1,UBE2V1"
TCGA.AD.6888	20	48224755	48628956	108	1.3253	LARGE-GAIN	FOCAL	5	"B4GALT5,RNF114,SLC9A8,SNAI1,SPATA2"
TCGA.A6.5660	20	48540276	49290988	183	1.3947	LARGE-GAIN	FOCAL	9	"CEBPB,FAM65C,LINC01272,PTPN1,RNF114,SNAI1,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.AG.3909.01A	20	48565738	49199144	24	0.7514	LARGE-GAIN	FOCAL	8	"CEBPB,LINC01272,PTPN1,RNF114,SNAI1,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.AG.A01N.01A	20	48565738	49227320	38	0.8251	LARGE-GAIN	FOCAL	9	"CEBPB,FAM65C,LINC01272,PTPN1,RNF114,SNAI1,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.AA.3679	20	48628956	49222858	157	1.2114	LARGE-GAIN	FOCAL	7	"CEBPB,FAM65C,LINC01272,PTPN1,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.AA.A02Y	20	49045777	49049248	4	1.9177	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3679	20	49228813	49595814	97	0.8598	LARGE-GAIN	FOCAL	6	"ADNP,BCAS4,DPM1,FAM65C,MOCS3,PARD6B"
TCGA.AG.3909.01A	20	49434682	49520399	9	1.3886	LARGE-GAIN	FOCAL	2	"ADNP,BCAS4"
TCGA.CK.5914.01A	20	49434682	49520399	9	1.9226	LARGE-GAIN	FOCAL	2	"ADNP,BCAS4"
TCGA.CK.5914.01A	20	49620579	50071063	8	1.1446	LARGE-GAIN	FOCAL	2	"KCNG1,NFATC2"
TCGA.QG.A5Z1	20	49843435	51240494	488	0.8321	LARGE-GAIN	FOCAL	4	"ATP9A,NFATC2,SALL4,ZFP64"
TCGA.AA.A010.01A	20	50048642	50346324	36	0.7691	LARGE-GAIN	FOCAL	2	"ATP9A,NFATC2"
TCGA.CK.5914.01A	20	50090500	50701054	37	1.6443	LARGE-GAIN	FOCAL	4	"ATP9A,NFATC2,SALL4,ZFP64"
TCGA.AA.A00N.01A	20	50217698	50346324	26	0.9849	LARGE-GAIN	FOCAL	1	ATP9A
TCGA.AG.3909.01A	20	50217698	50406522	29	1.344	LARGE-GAIN	FOCAL	2	"ATP9A,SALL4"
TCGA.AG.4009.01A	20	50225008	50346324	23	1.2351	LARGE-GAIN	FOCAL	1	ATP9A
TCGA.AD.6888	20	50407965	54374853	1701	1.3119	LARGE-GAIN	FOCAL	8	"BCAS1,CYP24A1,DOK5,PFDN4,SALL4,TSHZ2,ZFP64,ZNF217"
TCGA.AA.3982	20	50521289	50826345	91	1.3004	LARGE-GAIN	FOCAL	1	ZFP64
TCGA.CK.5914.01A	20	50704933	52199281	20	0.9325	LARGE-GAIN	FOCAL	3	"TSHZ2,ZFP64,ZNF217"
TCGA.AA.A010.01A	20	50721165	51870019	9	0.7879	LARGE-GAIN	FOCAL	2	"TSHZ2,ZFP64"
TCGA.NH.A6GB	20	50752756	53644366	1240	1.0939	LARGE-GAIN	FOCAL	7	"BCAS1,CYP24A1,DOK5,PFDN4,TSHZ2,ZFP64,ZNF217"
TCGA.AG.4009.01A	20	50768693	51870019	6	1.0375	LARGE-GAIN	FOCAL	2	"TSHZ2,ZFP64"
TCGA.AA.3982	20	50828284	51192656	105	1.089	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3982	20	51195240	51293641	47	0.8023	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3697	20	51230685	52112191	412	0.938	LARGE-GAIN	FOCAL	1	TSHZ2
TCGA.AA.3869	20	51428338	51965468	264	0.7384	LARGE-GAIN	FOCAL	1	TSHZ2
TCGA.DM.A285	20	51498624	53004986	664	1.2842	LARGE-GAIN	FOCAL	5	"BCAS1,CYP24A1,PFDN4,TSHZ2,ZNF217"
TCGA.AA.3860	20	51551394	51559323	6	1.0413	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3860	20	51565305	52198966	295	0.6878	LARGE-GAIN	FOCAL	2	"TSHZ2,ZNF217"
TCGA.AA.3941	20	51639509	52080507	220	0.8217	LARGE-GAIN	FOCAL	1	TSHZ2
TCGA.AA.3982	20	51643128	52838540	540	0.9065	LARGE-GAIN	FOCAL	5	"BCAS1,CYP24A1,PFDN4,TSHZ2,ZNF217"
TCGA.AZ.5403	20	51834023	52643154	301	0.8534	LARGE-GAIN	FOCAL	3	"BCAS1,TSHZ2,ZNF217"
TCGA.AA.3869	20	51966390	52643154	239	1.3698	LARGE-GAIN	FOCAL	3	"BCAS1,TSHZ2,ZNF217"
TCGA.AA.3941	20	52082476	52420611	98	1.118	LARGE-GAIN	FOCAL	2	"TSHZ2,ZNF217"
TCGA.AA.3697	20	52114184	52973557	375	1.1991	LARGE-GAIN	FOCAL	4	"BCAS1,CYP24A1,PFDN4,ZNF217"
TCGA.AA.3860	20	52199494	52352109	30	0.9744	LARGE-GAIN	FOCAL	1	ZNF217
TCGA.AA.3850	20	52310067	52406126	32	0.74635	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3860	20	52353189	52624581	121	0.7033	LARGE-GAIN	FOCAL	1	BCAS1
TCGA.AA.3941	20	52427318	52838540	225	0.8255	LARGE-GAIN	FOCAL	3	"BCAS1,CYP24A1,PFDN4"
TCGA.CK.5914.01A	20	52557954	52674571	12	2.3025	LARGE-GAIN	FOCAL	1	BCAS1
TCGA.AG.3909.01A	20	52557954	52773668	14	1.4118	LARGE-GAIN	FOCAL	2	"BCAS1,CYP24A1"
TCGA.AA.3860	20	52628803	52654218	10	1.1771	LARGE-GAIN	FOCAL	1	BCAS1
TCGA.AA.3667	20	52639283	52657716	8	1.6086	LARGE-GAIN	FOCAL	1	BCAS1
TCGA.DM.A0X9	20	52647807	52658560	7	1.6127	LARGE-GAIN	FOCAL	1	BCAS1
TCGA.F4.6459	20	52647807	52658592	7	1.4144	LARGE-GAIN	FOCAL	1	BCAS1
TCGA.G4.6626	20	52647807	52658592	8	1.6649	LARGE-GAIN	FOCAL	1	BCAS1
TCGA.AF.A56K	20	52872691	53048559	70	1.4257	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	20	53045629	53323202	133	0.7909	LARGE-GAIN	FOCAL	1	DOK5
TCGA.AA.3982	20	53211039	53464313	144	0.7776	LARGE-GAIN	FOCAL	1	DOK5
TCGA.NH.A6GB	20	53772058	53784317	8	1.3246	LARGE-GAIN	FOCAL	0	None
TCGA.NH.A6GB	20	53874300	54220663	153	0.8955	LARGE-GAIN	FOCAL	0	None
TCGA.F4.6460	20	54632833	54692294	16	1.1069	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	20	54820788	54844145	28	0.9133	LARGE-GAIN	FOCAL	1	MC3R
TCGA.AG.4009.01A	20	54948422	54963132	6	0.9704	LARGE-GAIN	FOCAL	1	AURKA
TCGA.AA.A010.01A	20	54959277	55206259	33	0.795	LARGE-GAIN	FOCAL	8	"AURKA,CASS4,CSTF1,FAM209A,FAM209B,GCNT7,RTFDC1,TFAP2C"
TCGA.AG.4009.01A	20	54970582	55111186	22	1.2808	LARGE-GAIN	FOCAL	6	"CASS4,CSTF1,FAM209A,FAM209B,GCNT7,RTFDC1"
TCGA.AG.4009.01A	20	55746008	55803238	6	1.4284	LARGE-GAIN	FOCAL	1	BMP7
TCGA.AA.A010.01A	20	55746008	55904887	9	0.7083	LARGE-GAIN	FOCAL	2	"BMP7,SPO11"
TCGA.CK.5914.01A	20	55746008	55904887	9	1.3965	LARGE-GAIN	FOCAL	2	"BMP7,SPO11"
TCGA.AG.4009.01A	20	55840713	55915095	12	0.7265	LARGE-GAIN	FOCAL	2	"BMP7,SPO11"
TCGA.AG.A008.01A	20	55906838	55949634	20	0.8839	LARGE-GAIN	FOCAL	3	"MTRNR2L3,RAE1,SPO11"
TCGA.AA.A00D.01A	20	55906838	55953046	21	1.3798	LARGE-GAIN	FOCAL	3	"MTRNR2L3,RAE1,SPO11"
TCGA.AG.A00C.01A	20	55906838	55953046	21	0.9588	LARGE-GAIN	FOCAL	3	"MTRNR2L3,RAE1,SPO11"
TCGA.AG.3906.01A	20	55917745	55982549	12	1.187	LARGE-GAIN	FOCAL	4	"MTRNR2L3,RAE1,RBM38,SPO11"
TCGA.AA.3982	20	55951039	56330369	170	1.2397	LARGE-GAIN	FOCAL	6	"CTCFL,PCK1,PMEPA1,RAE1,RBM38,ZBP1"
TCGA.AG.3909.01A	20	55968266	56087609	8	0.9401	LARGE-GAIN	FOCAL	2	"CTCFL,RBM38"
TCGA.AM.5820	20	55972764	55991694	10	1.4587	LARGE-GAIN	FOCAL	1	RBM38
TCGA.CK.5914.01A	20	55982549	56073564	4	1.6244	LARGE-GAIN	FOCAL	2	"CTCFL,RBM38"
TCGA.AG.4009.01A	20	55982549	56234562	29	1.1484	LARGE-GAIN	FOCAL	5	"CTCFL,PCK1,PMEPA1,RBM38,ZBP1"
TCGA.CK.5914.01A	20	56078450	56098710	9	0.7556	LARGE-GAIN	FOCAL	1	CTCFL
TCGA.A6.5660	20	56122724	56649269	282	0.8528	LARGE-GAIN	FOCAL	3	"PCK1,PMEPA1,ZBP1"
TCGA.AZ.6606	20	56129737	56130619	3	1.6258	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	20	56136477	56140425	7	0.7654	LARGE-GAIN	FOCAL	1	PCK1
TCGA.AG.3909.01A	20	56136477	56140425	7	1.387	LARGE-GAIN	FOCAL	1	PCK1
TCGA.CK.5914.01A	20	56136477	56228039	18	1.6346	LARGE-GAIN	FOCAL	3	"PCK1,PMEPA1,ZBP1"
TCGA.AA.3982	20	56331716	56994631	318	1.0202	LARGE-GAIN	FOCAL	4	"ANKRD60,C20orf85,RAB22A,VAPB"
TCGA.QL.A97D	20	56502797	57081129	259	1.034	LARGE-GAIN	FOCAL	5	"ANKRD60,APCDD1L,C20orf85,RAB22A,VAPB"
TCGA.D5.6924	20	56796033	56888212	37	1.0189	LARGE-GAIN	FOCAL	2	"ANKRD60,RAB22A"
TCGA.CK.5914.01A	20	56815487	57045616	24	1.5601	LARGE-GAIN	FOCAL	3	"APCDD1L,RAB22A,VAPB"
TCGA.AG.A00C.01A	20	57013943	57269441	16	0.8339	LARGE-GAIN	FOCAL	4	"APCDD1L,NPEPL1,STX16,VAPB"
TCGA.AA.3982	20	57078446	57811164	272	0.9453	LARGE-GAIN	FOCAL	10	"APCDD1L,ATP5E,CTSZ,GNAS,NELFCD,NPEPL1,SLMO2,STX16,TUBB1,ZNF831"
TCGA.AG.A00C.01A	20	57415124	57766085	40	0.8255	LARGE-GAIN	FOCAL	7	"ATP5E,CTSZ,GNAS,NELFCD,SLMO2,TUBB1,ZNF831"
TCGA.AG.3909.01A	20	57470602	57485691	8	1.372	LARGE-GAIN	FOCAL	1	GNAS
TCGA.AG.3906.01A	20	57561101	57563961	4	1.7449	LARGE-GAIN	FOCAL	1	NELFCD
TCGA.AG.3891.01A	20	57561101	57572641	16	0.8813	LARGE-GAIN	FOCAL	2	"CTSZ,NELFCD"
TCGA.AG.3906.01A	20	57564502	57572641	12	1.2899	LARGE-GAIN	FOCAL	2	"CTSZ,NELFCD"
TCGA.AG.4009.01A	20	57766085	58422077	23	0.8249	LARGE-GAIN	FOCAL	3	"EDN3,PHACTR3,ZNF831"
TCGA.AG.A01N.01A	20	57781943	60508006	95	0.9138	LARGE-GAIN	FOCAL	9	"C20orf197,CDH26,CDH4,EDN3,FAM217B,PHACTR3,PPP1R3D,SYCP2,ZNF831"
TCGA.CK.5914.01A	20	57827986	57899355	7	1.797	LARGE-GAIN	FOCAL	2	"EDN3,ZNF831"
TCGA.AG.3909.01A	20	57827986	58381054	13	1.1755	LARGE-GAIN	FOCAL	3	"EDN3,PHACTR3,ZNF831"
TCGA.AA.3982	20	57835388	58411278	305	0.9156	LARGE-GAIN	FOCAL	2	"EDN3,PHACTR3"
TCGA.AA.3941	20	57848278	58411278	300	0.952	LARGE-GAIN	FOCAL	2	"EDN3,PHACTR3"
TCGA.G4.6625	20	58129230	58647686	195	0.7255	LARGE-GAIN	FOCAL	6	"C20orf197,CDH26,FAM217B,PHACTR3,PPP1R3D,SYCP2"
TCGA.AA.3869	20	58253689	58270027	6	1.4636	LARGE-GAIN	FOCAL	1	PHACTR3
TCGA.CK.5914.01A	20	58318124	58439306	13	1.28	LARGE-GAIN	FOCAL	2	"PHACTR3,SYCP2"
TCGA.AG.3909.01A	20	58420185	58475740	27	1.069	LARGE-GAIN	FOCAL	2	"PHACTR3,SYCP2"
TCGA.DM.A28M.01A	20	58420185	58491485	35	0.7026	LARGE-GAIN	FOCAL	2	"PHACTR3,SYCP2"
TCGA.AA.3509.01A	20	58439306	58495367	33	1.7015	LARGE-GAIN	FOCAL	1	SYCP2
TCGA.AZ.4684.01A	20	58439306	58495367	33	1.4991	LARGE-GAIN	FOCAL	1	SYCP2
TCGA.CK.4948.01B	20	58439306	58514080	39	0.7811	LARGE-GAIN	FOCAL	3	"FAM217B,PPP1R3D,SYCP2"
TCGA.CK.5914.01A	20	58440375	58448874	7	1.7734	LARGE-GAIN	FOCAL	1	SYCP2
TCGA.A6.3808.01A	20	58443466	58482368	21	2.1546	LARGE-GAIN	FOCAL	1	SYCP2
TCGA.CK.5914.01A	20	58450278	58456959	7	2.2409	LARGE-GAIN	FOCAL	1	SYCP2
TCGA.CK.5914.01A	20	58460914	58486775	13	1.8197	LARGE-GAIN	FOCAL	1	SYCP2
TCGA.AG.3909.01A	20	58476680	58491485	8	0.7555	LARGE-GAIN	FOCAL	1	SYCP2
TCGA.CK.5914.01A	20	58487350	60701292	74	0.8633	LARGE-GAIN	FOCAL	8	"C20orf197,CDH26,CDH4,FAM217B,LSM14B,PPP1R3D,SYCP2,TAF4"
TCGA.DM.A28M.01A	20	58494124	58497355	5	1.7699	LARGE-GAIN	FOCAL	1	SYCP2
TCGA.AA.3982	20	58524528	58725518	113	0.7818	LARGE-GAIN	FOCAL	2	"C20orf197,CDH26"
TCGA.AA.3941	20	58524528	58725837	114	0.7672	LARGE-GAIN	FOCAL	2	"C20orf197,CDH26"
TCGA.AG.3909.01A	20	58533717	60509064	36	0.9163	LARGE-GAIN	FOCAL	3	"C20orf197,CDH26,CDH4"
TCGA.G4.6625	20	58648097	59044638	268	1.0144	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3941	20	58735574	59612912	493	0.7161	LARGE-GAIN	FOCAL	0	None
TCGA.AD.6888	20	59113708	59134654	5	1.7849	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3592	20	60006306	60080430	25	1.0412	LARGE-GAIN	FOCAL	1	CDH4
TCGA.AG.3592	20	60082885	60090381	3	2.0578	LARGE-GAIN	FOCAL	1	CDH4
TCGA.AG.A00C.01A	20	60551176	60868790	51	0.7581	LARGE-GAIN	FOCAL	7	"HRH3,LSM14B,MTG2,OSBPL2,PSMA7,SS18L1,TAF4"
TCGA.AG.3891.01A	20	60705534	60715834	8	1.404	LARGE-GAIN	FOCAL	2	"LSM14B,PSMA7"
TCGA.AG.3906.01A	20	60705534	60715834	9	1.8349	LARGE-GAIN	FOCAL	2	"LSM14B,PSMA7"
TCGA.AA.3872	20	60798311	61065193	61	1.0957	LARGE-GAIN	FOCAL	7	"ADRM1,CABLES2,GATA5,LAMA5,OSBPL2,RBBP8NL,RPS21"
TCGA.AA.A01Q.01A	20	60881225	60971331	30	0.7509	LARGE-GAIN	FOCAL	4	"ADRM1,CABLES2,LAMA5,RPS21"
TCGA.AA.3534	20	61420277	61462396	7	1.0764	LARGE-GAIN	FOCAL	3	"COL9A3,MRGBP,OGFR"
TCGA.AA.3867	20	61446011	61447758	3	1.8568	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	20	61464307	61845179	32	1.0721	LARGE-GAIN	FOCAL	8	"BHLHE23,COL9A3,DIDO1,DPH3P1,GID8,SLC17A9,TCFL5,YTHDF1"
TCGA.AA.A00L.01A	20	61464307	61845179	33	0.9491	LARGE-GAIN	FOCAL	8	"BHLHE23,COL9A3,DIDO1,DPH3P1,GID8,SLC17A9,TCFL5,YTHDF1"
TCGA.AF.3914.01A	20	61467191	61467502	2	3.3637	LARGE-GAIN	FOCAL	1	COL9A3
TCGA.AA.3930.01A	20	61467191	61468435	3	1.6838	LARGE-GAIN	FOCAL	1	COL9A3
TCGA.AG.A00C.01A	20	61473275	61596403	29	0.8427	LARGE-GAIN	FOCAL	5	"DIDO1,DPH3P1,GID8,SLC17A9,TCFL5"
TCGA.AG.3891.01A	20	61476995	61491430	5	1.3721	LARGE-GAIN	FOCAL	2	"DPH3P1,TCFL5"
TCGA.AG.3906.01A	20	61476995	61491430	5	1.853	LARGE-GAIN	FOCAL	2	"DPH3P1,TCFL5"
TCGA.AM.5820	20	61595635	61779485	51	0.9391	LARGE-GAIN	FOCAL	2	"BHLHE23,SLC17A9"
TCGA.AA.3869	20	61614172	61816950	51	1.0925	LARGE-GAIN	FOCAL	1	BHLHE23
TCGA.AM.5820	20	61790615	62126744	50	1.2657	LARGE-GAIN	FOCAL	8	"ARFGAP1,BIRC7,CHRNA4,COL20A1,EEF1A2,KCNQ2,NKAIN4,YTHDF1"
TCGA.AA.A01Q.01A	20	62069929	62128924	8	0.7828	LARGE-GAIN	FOCAL	2	"EEF1A2,KCNQ2"
TCGA.AD.6888	20	62163266	62199257	3	2.1526	LARGE-GAIN	FOCAL	4	"C20orf195,HELZ2,PTK6,SRMS"
TCGA.AA.3930.01A	20	62275072	62275518	2	3.1307	LARGE-GAIN	FOCAL	1	STMN3
TCGA.AA.A00L.01A	20	62293158	62309448	8	1.0811	LARGE-GAIN	FOCAL	1	RTEL1
TCGA.AA.A01Q.01A	20	62309448	62339886	9	0.7302	LARGE-GAIN	FOCAL	4	"ARFRP1,RTEL1,TNFRSF6B,ZGPAT"
TCGA.AG.3906.01A	20	62500597	62626643	20	1.1717	LARGE-GAIN	FOCAL	6	"DNAJC5,PRPF6,SAMD10,TPD52L2,UCKL1,ZNF512B"
TCGA.AA.A00D.01A	20	62614353	62648028	11	1.1844	LARGE-GAIN	FOCAL	1	PRPF6
TCGA.AA.A00L.01A	20	62614353	62648028	11	1.1956	LARGE-GAIN	FOCAL	1	PRPF6
TCGA.AA.A00D.01A	20	62654062	62854399	32	0.6919	LARGE-GAIN	FOCAL	8	"LKAAEAR1,MYT1,NPBWR2,OPRL1,PRPF6,RGS19,SOX18,TCEA2"
TCGA.AG.3906.01A	20	62697769	62729118	7	1.1887	LARGE-GAIN	FOCAL	4	"LKAAEAR1,OPRL1,RGS19,TCEA2"
TCGA.AA.A01Q.01A	20	62714701	62830142	5	0.8432	LARGE-GAIN	FOCAL	4	"LKAAEAR1,MYT1,NPBWR2,OPRL1"
TCGA.AA.A02K.01A	20	62729109	62737205	3	1.0533	LARGE-GAIN	FOCAL	2	"NPBWR2,OPRL1"
TCGA.AA.3982	20	62846207	62912462	28	0.8068	LARGE-GAIN	FOCAL	2	"MYT1,PCMTD2"
TCGA.AA.A00D.01A	20	62867856	62904524	9	1.2217	LARGE-GAIN	FOCAL	2	"MYT1,PCMTD2"
TCGA.AG.A008.01A	20	62867856	62904524	8	0.8149	LARGE-GAIN	FOCAL	2	"MYT1,PCMTD2"
TCGA.AA.A02K.01A	20	62867867	62904623	9	0.8765	LARGE-GAIN	FOCAL	2	"MYT1,PCMTD2"
TCGA.AG.A01N.01A	20	62871066	62904524	7	1.4602	LARGE-GAIN	FOCAL	2	"MYT1,PCMTD2"
TCGA.AA.3867	20	62877003	62912462	16	0.7722	LARGE-GAIN	FOCAL	1	PCMTD2
TCGA.AA.A00L.01A	20	62895735	62904524	4	1.2297	LARGE-GAIN	FOCAL	1	PCMTD2
TCGA.AG.A02X.01A	21	10862558	11098609	24	1.0413	LARGE-GAIN	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AA.A00D.01A	21	10906883	10933799	8	0.7918	LARGE-GAIN	FOCAL	1	TPTE
TCGA.AG.4015	21	10971565	14780335	20	0.8007	LARGE-GAIN	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.CM.6675	21	14736297	14838856	23	0.6916	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4015	21	14785632	14793504	3	1.8337	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	21	15746028	17763857	57	0.9571	LARGE-GAIN	FOCAL	5	"HSPA13,LOC388813,NRIP1,SAMSN1,USP25"
TCGA.DM.A1HB	21	19338036	19340201	7	1.1273	LARGE-GAIN	FOCAL	1	CHODL
TCGA.AA.3509.01A	21	19698709	22906807	33	0.8512	LARGE-GAIN	FOCAL	2	"NCAM2,TMPRSS15"
TCGA.AZ.4684.01A	21	19715796	22849560	27	0.9387	LARGE-GAIN	FOCAL	2	"NCAM2,TMPRSS15"
TCGA.AA.A01Z	21	19718903	20759061	415	0.8014	LARGE-GAIN	FOCAL	1	TMPRSS15
TCGA.AG.4015	21	21247576	21335583	30	0.7546	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4015	21	21548701	21723457	73	0.691	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4015	21	21765192	21785333	10	0.9086	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	21	23587147	23596747	4	1.4586	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A1HB	21	24672884	24676651	5	1.2228	LARGE-GAIN	FOCAL	0	None
TCGA.DY.A1DC	21	25464938	25477730	7	1.127	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A01Z	21	26622136	27056819	125	0.7778	LARGE-GAIN	FOCAL	2	"JAM2,MRPL39"
TCGA.AA.A00D.01A	21	26957981	27141298	23	0.8856	LARGE-GAIN	FOCAL	4	"ATP5J,GABPA,JAM2,MRPL39"
TCGA.AA.A00N.01A	21	27253943	27852540	20	1.049	LARGE-GAIN	FOCAL	2	"APP,CYYR1"
TCGA.AA.A00N.01A	21	28216492	28306748	6	0.8594	LARGE-GAIN	FOCAL	2	"ADAMTS1,ADAMTS5"
TCGA.DY.A1DC	21	28284149	28291454	11	1.0085	LARGE-GAIN	FOCAL	1	ADAMTS5
TCGA.AG.4015	21	28558372	28564507	9	0.8337	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4015	21	30386750	30521920	31	0.7839	LARGE-GAIN	FOCAL	4	"CCT8,MAP3K7CL,RWDD2B,USP16"
TCGA.AA.A00Q.01A	21	30400167	30438991	23	0.6859	LARGE-GAIN	FOCAL	2	"CCT8,USP16"
TCGA.AA.A00N.01A	21	30505602	31311651	32	0.7951	LARGE-GAIN	FOCAL	3	"BACH1,GRIK1,MAP3K7CL"
TCGA.AA.A00D.01A	21	33032022	33077658	21	0.761	LARGE-GAIN	FOCAL	2	"SCAF4,SOD1"
TCGA.AA.A010.01A	21	33318319	33727711	42	0.8006	LARGE-GAIN	FOCAL	4	"HUNK,MIS18A,MRAP,URB1"
TCGA.AA.A010.01A	21	34638221	34727595	18	0.697	LARGE-GAIN	FOCAL	2	"IFNAR1,IL10RB"
TCGA.AA.A00D.01A	21	34925135	35003731	29	0.9903	LARGE-GAIN	FOCAL	3	"CRYZL1,DONSON,SON"
TCGA.AG.A008.01A	21	35469899	35472768	2	1.1873	LARGE-GAIN	FOCAL	2	"MRPS6,SLC5A3"
TCGA.AA.3509.01A	21	35469899	35475246	5	1.6356	LARGE-GAIN	FOCAL	2	"MRPS6,SLC5A3"
TCGA.AZ.4684.01A	21	35469899	35475246	5	1.5668	LARGE-GAIN	FOCAL	2	"MRPS6,SLC5A3"
TCGA.AG.3602	21	37017000	37509951	188	0.8935	LARGE-GAIN	FOCAL	3	"CBR1,CBR3,SETD4"
TCGA.AA.A00D.01A	21	38385815	38467596	14	0.9978	LARGE-GAIN	FOCAL	3	"PIGP,RIPPLY3,TTC3"
TCGA.AA.A00Q.01A	21	38460053	38496892	12	1.0179	LARGE-GAIN	FOCAL	1	TTC3
TCGA.DY.A1DC	21	38764836	38807091	17	0.8981	LARGE-GAIN	FOCAL	1	DYRK1A
TCGA.AA.A00N.01A	21	38792585	39947516	32	0.829	LARGE-GAIN	FOCAL	5	"DSCR4,DYRK1A,ERG,KCNJ15,KCNJ6"
TCGA.AA.3509.01A	21	40555145	40584550	11	0.7701	LARGE-GAIN	FOCAL	2	"BRWD1,PSMG1"
TCGA.AZ.4684.01A	21	40558922	40568738	3	1.5176	LARGE-GAIN	FOCAL	1	BRWD1
TCGA.AA.A00N.01A	21	40596975	40630366	10	0.7213	LARGE-GAIN	FOCAL	1	BRWD1
TCGA.AA.A00N.01A	21	41032525	42540149	46	0.9977	LARGE-GAIN	FOCAL	5	"B3GALT5,BACE2,DSCAM,IGSF5,PCP4"
TCGA.AA.A01Q.01A	21	41384913	41505734	5	0.931	LARGE-GAIN	FOCAL	1	DSCAM
TCGA.A6.3808.01A	21	41384913	42080353	32	1.2696	LARGE-GAIN	FOCAL	1	DSCAM
TCGA.AG.A01W.01A	21	42094527	42119335	12	0.8016	LARGE-GAIN	FOCAL	1	DSCAM
TCGA.AG.4021	21	42310881	42374992	17	0.6952	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3979	21	42832637	43076451	101	0.8349	LARGE-GAIN	FOCAL	1	TMPRSS2
TCGA.A6.5661	21	43092200	43135774	15	1.4793	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	21	43349945	43352348	4	0.8754	LARGE-GAIN	FOCAL	1	C2CD2
TCGA.AM.5820	21	44072444	44083602	7	1.0783	LARGE-GAIN	FOCAL	1	PDE9A
TCGA.AM.5820	21	44269587	44286189	9	0.8384	LARGE-GAIN	FOCAL	1	WDR4
TCGA.AA.3524	21	44829146	44837358	3	1.1851	LARGE-GAIN	FOCAL	1	SIK1
TCGA.AA.3529	21	44829146	44837358	3	1.4227	LARGE-GAIN	FOCAL	1	SIK1
TCGA.AA.A01Q.01A	21	45815249	45838307	9	0.9023	LARGE-GAIN	FOCAL	1	TRPM2
TCGA.AA.A010.01A	21	46031971	46131309	16	0.7409	LARGE-GAIN	FOCAL	10	"KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,TSPEAR"
TCGA.AZ.4681	21	46121909	46142858	8	0.8748	LARGE-GAIN	FOCAL	1	TSPEAR
TCGA.AM.5820	21	46839624	46966179	27	1.0489	LARGE-GAIN	FOCAL	2	"COL18A1,SLC19A1"
TCGA.AA.A010.01A	21	47878994	48022151	38	0.8243	LARGE-GAIN	FOCAL	2	"DIP2A,S100B"
TCGA.AA.3862.01A	22	16266947	16448772	4	2.2623	LARGE-GAIN	FOCAL	1	POTEH
TCGA.CM.6163	22	16894195	17023513	4	1.1543	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	22	17264457	17488782	13	1.2398	LARGE-GAIN	FOCAL	2	"GAB4,XKR3"
TCGA.AG.A01W.01A	22	17543597	17550857	5	1.3468	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00L.01A	22	18072302	18102178	10	0.995	LARGE-GAIN	FOCAL	2	"ATP6V1E1,SLC25A18"
TCGA.AG.A032.01A	22	18348635	18355465	2	4.4028	LARGE-GAIN	FOCAL	1	MICAL3
TCGA.AG.3906.01A	22	19076833	19175456	16	0.7466	LARGE-GAIN	FOCAL	6	"CLTCL1,DGCR14,DGCR2,GSC2,SLC25A1,TSSK2"
TCGA.AA.A010.01A	22	19213690	19375941	27	0.721	LARGE-GAIN	FOCAL	2	"CLTCL1,HIRA"
TCGA.AA.A00N.01A	22	19340842	19393256	19	1.0255	LARGE-GAIN	FOCAL	1	HIRA
TCGA.AG.A01W.01A	22	19676453	19685497	11	0.9665	LARGE-GAIN	FOCAL	0	None
TCGA.CK.4952.01A	22	19893009	20172131	19	0.6872	LARGE-GAIN	FOCAL	9	"ARVCF,COMT,DGCR8,LOC388849,RANBP1,TANGO2,TRMT2A,TXNRD2,ZDHHC8"
TCGA.AA.A00D.01A	22	20077479	20094753	8	1.0366	LARGE-GAIN	FOCAL	1	DGCR8
TCGA.AG.3906.01A	22	20781633	20800698	5	0.8412	LARGE-GAIN	FOCAL	2	"KLHL22,SCARF2"
TCGA.AA.A00N.01A	22	21080714	21173881	39	0.6842	LARGE-GAIN	FOCAL	2	"PI4KA,SERPIND1"
TCGA.AA.A010.01A	22	21088330	21161602	27	0.8906	LARGE-GAIN	FOCAL	2	"PI4KA,SERPIND1"
TCGA.AA.A00A.01A	22	21161602	21303951	17	0.8642	LARGE-GAIN	FOCAL	3	"CRKL,PI4KA,SNAP29"
TCGA.AA.3862.01A	22	21414613	21965109	12	1.4481	LARGE-GAIN	FOCAL	6	"HIC2,LRRC74B,RIMBP3B,RIMBP3C,TMEM191C,UBE2L3"
TCGA.AA.3861.01A	22	21414613	21990713	24	1.1384	LARGE-GAIN	FOCAL	8	"CCDC116,HIC2,LRRC74B,RIMBP3B,RIMBP3C,TMEM191C,UBE2L3,YDJC"
TCGA.AA.A00N.01A	22	21480544	21579632	8	1.0787	LARGE-GAIN	FOCAL	0	None
TCGA.CM.6165.01A	22	22057627	22058071	2	0.6952	LARGE-GAIN	FOCAL	1	YPEL1
TCGA.AA.A00N.01A	22	22385320	22764075	19	1.2567	LARGE-GAIN	FOCAL	1	VPREB1
TCGA.CK.5914.01A	22	22385320	22781815	20	0.7715	LARGE-GAIN	FOCAL	1	VPREB1
TCGA.AA.A00N.01A	22	22930616	23264719	45	1.239	LARGE-GAIN	FOCAL	2	"GGTLC2,IGLL5"
TCGA.CK.5914.01A	22	23010722	23165217	19	1.307	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	22	23101166	23165539	9	1.2828	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	22	23165539	23401643	17	0.7309	LARGE-GAIN	FOCAL	2	"IGLL5,RSPH14"
TCGA.AA.A010.01A	22	23213649	23264719	15	0.6951	LARGE-GAIN	FOCAL	1	IGLL5
TCGA.AA.A00N.01A	22	23626126	23950854	18	0.6794	LARGE-GAIN	FOCAL	3	"BCR,DRICH1,IGLL1"
TCGA.AA.A00N.01A	22	23973965	24040983	11	0.82	LARGE-GAIN	FOCAL	2	"DRICH1,RGL4"
TCGA.AG.3906.01A	22	24179816	24224624	8	0.7673	LARGE-GAIN	FOCAL	2	"DERL3,SLC2A11"
TCGA.AA.A00N.01A	22	24324777	24384078	9	0.9409	LARGE-GAIN	FOCAL	4	"GSTT1,GSTT2,GSTT2B,LOC391322"
TCGA.AA.A00N.01A	22	24483387	24515384	6	0.9598	LARGE-GAIN	FOCAL	1	CABIN1
TCGA.AA.A010.01A	22	24581418	24640486	13	0.6974	LARGE-GAIN	FOCAL	2	"GGT5,SUSD2"
TCGA.AA.A00A.01A	22	24698162	24730360	7	0.9591	LARGE-GAIN	FOCAL	1	SPECC1L
TCGA.AA.A00D.01A	22	24698162	24730360	7	1.1207	LARGE-GAIN	FOCAL	1	SPECC1L
TCGA.AA.3861.01A	22	25006997	25115387	9	1.9277	LARGE-GAIN	FOCAL	2	"GGT1,PIWIL3"
TCGA.AA.3862.01A	22	25006997	25115387	10	1.6433	LARGE-GAIN	FOCAL	2	"GGT1,PIWIL3"
TCGA.AA.A00N.01A	22	25155794	25297753	21	1.229	LARGE-GAIN	FOCAL	2	"PIWIL3,SGSM1"
TCGA.AA.A00L.01A	22	26000286	26118236	20	0.7786	LARGE-GAIN	FOCAL	1	ADRBK2
TCGA.AA.A00N.01A	22	26168263	26773589	53	1.3572	LARGE-GAIN	FOCAL	2	"MYO18B,SEZ6L"
TCGA.CK.5914.01A	22	26173508	26773589	52	0.8034	LARGE-GAIN	FOCAL	2	"MYO18B,SEZ6L"
TCGA.RU.A8FL	22	26345240	26622278	142	0.7365	LARGE-GAIN	FOCAL	2	"MYO18B,SEZ6L"
TCGA.RU.A8FL	22	26624154	27076595	253	1.1748	LARGE-GAIN	FOCAL	8	"ASPHD2,CRYBA4,CRYBB1,HPS4,SEZ6L,SRRD,TFIP11,TPST2"
TCGA.AA.A00N.01A	22	26997814	28146856	10	0.7524	LARGE-GAIN	FOCAL	3	"CRYBA4,CRYBB1,MN1"
TCGA.RU.A8FL	22	27076983	28261629	789	0.7281	LARGE-GAIN	FOCAL	2	"MN1,PITPNB"
TCGA.AZ.6599	22	27424978	27425364	3	1.0932	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	22	28410189	28702436	14	1.2317	LARGE-GAIN	FOCAL	1	TTC28
TCGA.AA.A00L.01A	22	29091658	29179459	18	0.8569	LARGE-GAIN	FOCAL	3	"CCDC117,CHEK2,HSCB"
TCGA.AA.A00D.01A	22	29141803	29457678	14	0.9162	LARGE-GAIN	FOCAL	5	"C22orf31,CCDC117,HSCB,XBP1,ZNRF3"
TCGA.AG.3906.01A	22	29147151	29182060	6	1.035	LARGE-GAIN	FOCAL	2	"CCDC117,HSCB"
TCGA.AG.A00C.01A	22	29169639	29195897	9	0.6995	LARGE-GAIN	FOCAL	2	"CCDC117,XBP1"
TCGA.CK.5914.01A	22	29517348	29534561	4	1.0915	LARGE-GAIN	FOCAL	1	KREMEN1
TCGA.AA.A00D.01A	22	29664265	29725605	20	0.8487	LARGE-GAIN	FOCAL	4	"AP1B1,EWSR1,GAS2L1,RASL10A"
TCGA.AA.A00L.01A	22	29682932	29696035	11	0.9425	LARGE-GAIN	FOCAL	1	EWSR1
TCGA.CK.5914.01A	22	29907053	29932564	12	0.7256	LARGE-GAIN	FOCAL	1	THOC5
TCGA.AG.3906.01A	22	29935267	29966357	13	0.9438	LARGE-GAIN	FOCAL	2	"NIPSNAP1,THOC5"
TCGA.AG.3891.01A	22	29939385	29957720	8	1.0353	LARGE-GAIN	FOCAL	2	"NIPSNAP1,THOC5"
TCGA.AA.A00L.01A	22	30051557	30090665	12	0.8659	LARGE-GAIN	FOCAL	1	NF2
TCGA.AA.A00N.01A	22	30067773	30070778	3	0.8415	LARGE-GAIN	FOCAL	1	NF2
TCGA.AM.5820	22	30088038	30113959	8	0.897	LARGE-GAIN	FOCAL	1	NF2
TCGA.AA.A00N.01A	22	30127173	30211942	21	0.6834	LARGE-GAIN	FOCAL	4	"ASCC2,CABP7,UQCR10,ZMAT5"
TCGA.AA.A010.01A	22	30163368	30202420	11	0.9444	LARGE-GAIN	FOCAL	2	"ASCC2,UQCR10"
TCGA.AA.3509.01A	22	30489891	30494820	2	1.2502	LARGE-GAIN	FOCAL	1	HORMAD2
TCGA.AG.3906.01A	22	30776022	30803382	6	0.8185	LARGE-GAIN	FOCAL	2	"RNF215,SEC14L2"
TCGA.AA.A00Q.01A	22	30921569	30934764	3	0.9613	LARGE-GAIN	FOCAL	1	SEC14L6
TCGA.AG.3906.01A	22	30953212	30977297	7	0.8854	LARGE-GAIN	FOCAL	2	"GAL3ST1,PES1"
TCGA.AA.A00D.01A	22	30975720	30985137	7	0.7462	LARGE-GAIN	FOCAL	1	PES1
TCGA.AG.3906.01A	22	31583033	31806936	38	0.7025	LARGE-GAIN	FOCAL	5	"DRG1,LIMK2,PATZ1,PIK3IP1,RNF185"
TCGA.AA.A00A.01A	22	31795604	31846211	18	0.7787	LARGE-GAIN	FOCAL	2	"DRG1,EIF4ENIF1"
TCGA.AG.3906.01A	22	31979810	31998137	4	0.9079	LARGE-GAIN	FOCAL	1	SFI1
TCGA.AA.A00N.01A	22	32206478	32289516	21	1.1304	LARGE-GAIN	FOCAL	1	DEPDC5
TCGA.AA.A00N.01A	22	32462875	32495142	10	1.2263	LARGE-GAIN	FOCAL	1	SLC5A1
TCGA.AA.A00L.01A	22	32500725	32546891	5	1.023	LARGE-GAIN	FOCAL	2	"C22orf42,SLC5A1"
TCGA.AA.3861.01A	22	32546254	32554923	7	2.5593	LARGE-GAIN	FOCAL	1	C22orf42
TCGA.AA.3862.01A	22	32546254	32554923	7	2.4708	LARGE-GAIN	FOCAL	1	C22orf42
TCGA.AA.A00N.01A	22	32625129	32643346	7	0.9071	LARGE-GAIN	FOCAL	1	SLC5A4
TCGA.AA.A00L.01A	22	32811854	32853208	14	0.958	LARGE-GAIN	FOCAL	1	BPIFC
TCGA.CK.5914.01A	22	32889040	35481397	41	0.7659	LARGE-GAIN	FOCAL	5	"FBXO7,ISX,LARGE,SYN3,TIMP3"
TCGA.AA.A00N.01A	22	32894161	35481397	39	1.1536	LARGE-GAIN	FOCAL	5	"FBXO7,ISX,LARGE,SYN3,TIMP3"
TCGA.DY.A1DG	22	34377019	34483129	51	1.7565	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	22	35658300	35683298	8	0.9738	LARGE-GAIN	FOCAL	1	HMGXB4
TCGA.AG.A01W.01A	22	36039377	36101008	4	0.9528	LARGE-GAIN	FOCAL	1	APOL6
TCGA.G4.6294	22	36545569	36591379	29	0.8622	LARGE-GAIN	FOCAL	2	"APOL3,APOL4"
TCGA.AA.A00N.01A	22	37257133	37333402	19	1.155	LARGE-GAIN	FOCAL	2	"CSF2RB,NCF4"
TCGA.AA.A00L.01A	22	37470602	37540077	20	0.7667	LARGE-GAIN	FOCAL	2	"IL2RB,TMPRSS6"
TCGA.AA.A00L.01A	22	37627904	37881935	27	0.7267	LARGE-GAIN	FOCAL	4	"CYTH4,ELFN2,MFNG,RAC2"
TCGA.AM.5820	22	37752651	37825219	33	0.9516	LARGE-GAIN	FOCAL	1	ELFN2
TCGA.AG.3906.01A	22	37903784	37975808	8	0.6803	LARGE-GAIN	FOCAL	3	"CARD10,CDC42EP1,LGALS2"
TCGA.AG.A00Y.01A	22	38373832	38467634	10	1.6117	LARGE-GAIN	FOCAL	3	"PICK1,POLR2F,SOX10"
TCGA.RU.A8FL	22	38741792	38799860	8	0.8024	LARGE-GAIN	FOCAL	1	LOC400927-CSNK1E
TCGA.AA.A00D.01A	22	38875549	39120264	40	0.7146	LARGE-GAIN	FOCAL	8	"CBY1,DDX17,DMC1,FAM227A,GTPBP1,JOSD1,KDELR3,TOMM22"
TCGA.AA.A010.01A	22	38935290	39045984	26	0.7676	LARGE-GAIN	FOCAL	2	"DMC1,FAM227A"
TCGA.AA.A00N.01A	22	39378370	39410280	8	0.9308	LARGE-GAIN	FOCAL	3	"APOBEC3A_B,APOBEC3B,APOBEC3C"
TCGA.AM.5820	22	39764553	39783026	9	0.9968	LARGE-GAIN	FOCAL	1	SYNGR1
TCGA.AA.A00D.01A	22	40745835	40796723	12	0.8116	LARGE-GAIN	FOCAL	2	"ADSL,SGSM3"
TCGA.AA.A00N.01A	22	41572238	41574309	4	0.9397	LARGE-GAIN	FOCAL	1	EP300
TCGA.AA.A01Q.01A	22	41572238	41601282	5	1.017	LARGE-GAIN	FOCAL	1	EP300
TCGA.AA.A00D.01A	22	41999214	42057293	14	0.9381	LARGE-GAIN	FOCAL	2	"DESI1,XRCC6"
TCGA.AA.3862.01A	22	42032100	42042850	4	2.4659	LARGE-GAIN	FOCAL	1	XRCC6
TCGA.AG.A008.01A	22	42090164	42099313	5	0.8447	LARGE-GAIN	FOCAL	2	"C22orf46,MEI1"
TCGA.AA.3862.01A	22	42522537	42526593	7	1.7484	LARGE-GAIN	FOCAL	1	CYP2D6
TCGA.AA.A00D.01A	22	44359129	44377225	10	0.8754	LARGE-GAIN	FOCAL	1	SAMM50
TCGA.AM.5820	22	45123840	45133339	6	1.1129	LARGE-GAIN	FOCAL	2	"PRR5,PRR5-ARHGAP8"
TCGA.AG.A01W.01A	22	45308361	45451681	16	0.8671	LARGE-GAIN	FOCAL	1	PHF21B
TCGA.AA.A00D.01A	22	45564007	45579231	6	1.1248	LARGE-GAIN	FOCAL	1	NUP50
TCGA.AA.3861.01A	22	45574137	45593624	6	1.1966	LARGE-GAIN	FOCAL	2	"KIAA0930,NUP50"
TCGA.AA.3862.01A	22	45804569	45828142	8	1.5685	LARGE-GAIN	FOCAL	2	"RIBC2,SMC1B"
TCGA.AA.3861.01A	22	45809292	45828142	8	1.3304	LARGE-GAIN	FOCAL	2	"RIBC2,SMC1B"
TCGA.AM.5820	22	46482947	46535933	18	0.9894	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	22	46493749	46789988	46	0.7353	LARGE-GAIN	FOCAL	7	"CDPF1,CELSR1,GTSE1,PKDREJ,PPARA,TRMU,TTC38"
TCGA.AG.3906.01A	22	46652488	46671104	8	1.0769	LARGE-GAIN	FOCAL	2	"PKDREJ,TTC38"
TCGA.AM.5820	22	47028313	47075461	12	1.1424	LARGE-GAIN	FOCAL	1	GRAMD4
TCGA.AM.5820	22	47519603	47574008	27	0.8438	LARGE-GAIN	FOCAL	1	TBC1D22A
TCGA.AM.5820	22	47767892	47771804	7	0.8607	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	22	48687325	48814872	25	0.7039	LARGE-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	22	50515238	50537824	7	0.7657	LARGE-GAIN	FOCAL	2	"MLC1,MOV10L1"
TCGA.AA.A00D.01A	22	50515238	50599075	29	0.7904	LARGE-GAIN	FOCAL	2	"MLC1,MOV10L1"
TCGA.AA.A024.01A	22	50965555	50966901	3	4.7063	LARGE-GAIN	FOCAL	1	TYMP
TCGA.AG.A00Y.01A	22	51011262	51014421	4	3.2123	LARGE-GAIN	FOCAL	1	CPT1B
TCGA.AG.3906.01A	22	51012709	51177662	16	1.1072	LARGE-GAIN	FOCAL	6	"ACR,ARSA,CHKB,CPT1B,MAPK8IP2,SHANK3"
TCGA.AG.A00Y.01A	22	51207431	51220568	7	1.4227	LARGE-GAIN	FOCAL	1	RABL2B
TCGA.AG.3611.01A	23	1401538	1424282	9	0.7141	LARGE-GAIN	FOCAL	1	CSF2RA
TCGA.AG.3611.01A	23	1428286	1477676	7	1.0794	LARGE-GAIN	FOCAL	2	"CSF2RA,IL3RA"
TCGA.AG.3611.01A	23	1497524	1719532	12	0.7599	LARGE-GAIN	FOCAL	6	"AKAP17A,ASMT,ASMTL,IL3RA,P2RY8,SLC25A6"
TCGA.AG.A02G.01A	23	1536816	1585065	11	1.7142	LARGE-GAIN	FOCAL	2	"ASMTL,P2RY8"
TCGA.AG.3611.01A	23	1734040	1761654	8	1.2243	LARGE-GAIN	FOCAL	1	ASMT
TCGA.AA.3967.01A	23	2632418	5947274	87	0.849	LARGE-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,CD99,GYG2,MXRA5,NLGN4X,PRKX,XG"
TCGA.DM.A28F	23	2703632	4251280	592	0.8281	LARGE-GAIN	FOCAL	8	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,PRKX,XG"
TCGA.DM.A28H	23	2703632	6715163	1581	0.8445	LARGE-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AF.3913	23	2703632	6733903	1594	0.7324	LARGE-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AG.3592	23	2703632	6772188	1607	0.7904	LARGE-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.SS.A7HO	23	2703632	6815239	1586	0.8071	LARGE-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AG.3883	23	2703632	6912488	1647	0.77	LARGE-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.CK.5914.01A	23	2873408	3202108	25	0.7216	LARGE-GAIN	FOCAL	3	"ARSE,ARSF,ARSH"
TCGA.AA.3812	23	3215651	3233111	30	0.8384	LARGE-GAIN	FOCAL	1	MXRA5
TCGA.AA.A03J	23	4233568	4284149	34	0.7367	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	23	4252203	4374846	49	1.1795	LARGE-GAIN	FOCAL	0	None
TCGA.DM.A28F	23	4376434	6722272	946	0.8246	LARGE-GAIN	FOCAL	2	"NLGN4X,VCX3A"
TCGA.A6.2683	23	7059035	7075478	5	0.8838	LARGE-GAIN	FOCAL	1	HDHD1
TCGA.DC.4745	23	7366718	8844009	516	0.9692	LARGE-GAIN	FOCAL	6	"ANOS1,FAM9A,PNPLA4,VCX,VCX2,VCX3B"
TCGA.AA.3666	23	7708040	8409207	275	0.8647	LARGE-GAIN	FOCAL	3	"PNPLA4,VCX,VCX2"
TCGA.AA.A00N.01A	23	8500964	8699833	14	1.0254	LARGE-GAIN	FOCAL	1	ANOS1
TCGA.AA.A024.01A	23	10084402	10085207	2	4.0752	LARGE-GAIN	FOCAL	1	WWC3
TCGA.AA.A00N.01A	23	10153031	10534966	19	1.1484	LARGE-GAIN	FOCAL	2	"CLCN4,MID1"
TCGA.CK.5914.01A	23	10153031	10534966	19	0.771	LARGE-GAIN	FOCAL	2	"CLCN4,MID1"
TCGA.EI.6512	23	10734464	10799243	3	1.5659	LARGE-GAIN	FOCAL	1	MID1
TCGA.F5.6465	23	10734464	10799243	3	0.9863	LARGE-GAIN	FOCAL	1	MID1
TCGA.DT.5265	23	10908233	13063219	828	0.7322	LARGE-GAIN	FOCAL	10	"AMELX,ARHGAP6,FAM9C,FRMPD4,HCCS,MSL3,PRPS2,TLR7,TLR8,TMSB4X"
TCGA.AG.A00C.01A	23	11130144	11161971	9	0.8682	LARGE-GAIN	FOCAL	2	"ARHGAP6,HCCS"
TCGA.AA.A00N.01A	23	11187574	11776763	17	0.7949	LARGE-GAIN	FOCAL	3	"AMELX,ARHGAP6,MSL3"
TCGA.AG.3906.01A	23	11777882	11793082	12	1.0177	LARGE-GAIN	FOCAL	1	MSL3
TCGA.CK.5914.01A	23	11793082	12728508	15	0.8086	LARGE-GAIN	FOCAL	2	"FRMPD4,MSL3"
TCGA.AA.A00N.01A	23	12157023	12738551	18	0.9723	LARGE-GAIN	FOCAL	1	FRMPD4
TCGA.AG.3906.01A	23	12817284	12828114	3	0.7958	LARGE-GAIN	FOCAL	1	PRPS2
TCGA.AG.A00C.01A	23	12903599	13727313	29	0.7167	LARGE-GAIN	FOCAL	8	"ATXN3L,EGFL6,FAM9C,RAB9A,TCEANC,TLR7,TLR8,TMSB4X"
TCGA.AA.3494	23	12940812	13096154	58	0.7653	LARGE-GAIN	FOCAL	3	"FAM9C,TLR8,TMSB4X"
TCGA.CM.6170	23	13054168	13060035	3	1.3035	LARGE-GAIN	FOCAL	1	FAM9C
TCGA.DC.4745	23	13470939	14883947	438	1.3055	LARGE-GAIN	FOCAL	9	"EGFL6,FANCB,GEMIN8,GLRA2,GPM6B,OFD1,RAB9A,TCEANC,TRAPPC2"
TCGA.CK.5914.01A	23	13775757	14937747	54	0.7464	LARGE-GAIN	FOCAL	6	"FANCB,GEMIN8,GLRA2,GPM6B,MOSPD2,OFD1"
TCGA.AA.A00N.01A	23	15287849	15315644	6	1.1209	LARGE-GAIN	FOCAL	2	"ASB11,ASB9"
TCGA.AA.A00N.01A	23	15401942	15646052	46	0.8454	LARGE-GAIN	FOCAL	5	"ACE2,BMX,FIGF,PIR,TMEM27"
TCGA.CK.5914.01A	23	15526445	15609834	33	0.8949	LARGE-GAIN	FOCAL	2	"ACE2,BMX"
TCGA.AA.3509.01A	23	15657648	15840857	29	1.0998	LARGE-GAIN	FOCAL	3	"CA5B,TMEM27,ZRSR2"
TCGA.AA.3509.01A	23	15845373	15870430	6	2.59	LARGE-GAIN	FOCAL	1	AP1S2
TCGA.AZ.4684.01A	23	15845373	15870430	6	1.3407	LARGE-GAIN	FOCAL	1	AP1S2
TCGA.AA.A00N.01A	23	16142080	16188518	4	1.4328	LARGE-GAIN	FOCAL	2	"GRPR,MAGEB17"
TCGA.AA.3509.01A	23	16142080	16871776	49	0.9976	LARGE-GAIN	FOCAL	7	"CTPS2,GRPR,MAGEB17,RBBP7,S100G,SYAP1,TXLNG"
TCGA.AG.3906.01A	23	16875665	16887150	4	1.0397	LARGE-GAIN	FOCAL	1	RBBP7
TCGA.AA.3509.01A	23	16875665	18622763	80	1.4654	LARGE-GAIN	FOCAL	8	"BEND2,CDKL5,NHS,RAI2,RBBP7,REPS2,SCML1,SCML2"
TCGA.AA.A00N.01A	23	16887600	17749948	29	0.9784	LARGE-GAIN	FOCAL	3	"NHS,RBBP7,REPS2"
TCGA.CK.5914.01A	23	17040199	17710403	19	0.7867	LARGE-GAIN	FOCAL	2	"NHS,REPS2"
TCGA.AA.3861.01A	23	17762227	19371173	138	0.8938	LARGE-GAIN	FOCAL	10	"ADGRG2,BEND2,CDKL5,PDHA1,PHKA2,PPEF1,RAI2,RS1,SCML1,SCML2"
TCGA.CK.5914.01A	23	18582523	18622763	10	1.0959	LARGE-GAIN	FOCAL	1	CDKL5
TCGA.AA.3509.01A	23	18626882	19971036	143	1.0423	LARGE-GAIN	FOCAL	9	"ADGRG2,CDKL5,CXorf23,MAP3K15,PDHA1,PHKA2,PPEF1,RS1,SH3KBP1"
TCGA.AA.A00N.01A	23	18969180	18972322	3	1.5123	LARGE-GAIN	FOCAL	1	PHKA2
TCGA.AA.3975	23	19230413	19476433	63	1.56	LARGE-GAIN	FOCAL	2	"MAP3K15,PDHA1"
TCGA.AG.A00C.01A	23	19363804	19380804	13	0.8656	LARGE-GAIN	FOCAL	2	"MAP3K15,PDHA1"
TCGA.AA.A00N.01A	23	19387133	19854196	38	0.72	LARGE-GAIN	FOCAL	2	"MAP3K15,SH3KBP1"
TCGA.A6.3808.01A	23	19391602	20134821	62	0.7305	LARGE-GAIN	FOCAL	4	"CXorf23,MAP3K15,MAP7D2,SH3KBP1"
TCGA.AA.3967.01A	23	19606492	19610128	2	2.6295	LARGE-GAIN	FOCAL	1	SH3KBP1
TCGA.CK.5914.01A	23	19626008	19724961	9	1.1752	LARGE-GAIN	FOCAL	1	SH3KBP1
TCGA.AA.3509.01A	23	19971854	20081485	20	1.6659	LARGE-GAIN	FOCAL	2	"CXorf23,MAP7D2"
TCGA.CK.5914.01A	23	20034173	20134821	11	0.8187	LARGE-GAIN	FOCAL	1	MAP7D2
TCGA.AA.A00N.01A	23	20043022	20134821	10	0.8419	LARGE-GAIN	FOCAL	1	MAP7D2
TCGA.AA.3509.01A	23	20082793	21444563	33	1.0869	LARGE-GAIN	FOCAL	4	"CNKSR2,EIF1AX,MAP7D2,RPS6KA3"
TCGA.AG.A00C.01A	23	20146328	20179710	9	0.8725	LARGE-GAIN	FOCAL	2	"EIF1AX,RPS6KA3"
TCGA.AA.A02H.01A	23	20190857	20206582	7	0.9848	LARGE-GAIN	FOCAL	1	RPS6KA3
TCGA.AA.A02H.01A	23	20222092	21772289	30	1.0129	LARGE-GAIN	FOCAL	4	"CNKSR2,KLHL34,RPS6KA3,SMPX"
TCGA.AG.A01W.01A	23	21418481	21584952	20	0.7991	LARGE-GAIN	FOCAL	1	CNKSR2
TCGA.AZ.4684.01A	23	21450758	21670433	19	1.0977	LARGE-GAIN	FOCAL	1	CNKSR2
TCGA.AA.3509.01A	23	21450758	21755649	21	2.1434	LARGE-GAIN	FOCAL	3	"CNKSR2,KLHL34,SMPX"
TCGA.AA.A00N.01A	23	21488833	21627172	16	0.9797	LARGE-GAIN	FOCAL	1	CNKSR2
TCGA.AA.A01C.01A	23	21519575	21613377	10	1.1749	LARGE-GAIN	FOCAL	1	CNKSR2
TCGA.AA.3509.01A	23	21761814	23693090	61	1.2813	LARGE-GAIN	FOCAL	9	"DDX53,MBTPS2,PHEX,PRDX4,PTCHD1,SMPX,SMS,YY2,ZNF645"
TCGA.5M.AATE	23	22807437	22824547	10	1.5515	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	23	23689596	24226970	56	1.0473	LARGE-GAIN	FOCAL	8	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,PRDX4,SAT1,ZFX"
TCGA.AA.3509.01A	23	23697235	24226970	58	0.945	LARGE-GAIN	FOCAL	8	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,PRDX4,SAT1,ZFX"
TCGA.AA.3862.01A	23	23723567	24382555	54	1.5409	LARGE-GAIN	FOCAL	9	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,SAT1,SUPT20HL1,SUPT20HL2,ZFX"
TCGA.AA.A00D.01A	23	24228303	24665076	20	0.7501	LARGE-GAIN	FOCAL	5	"PCYT1B,PDK3,SUPT20HL1,SUPT20HL2,ZFX"
TCGA.DT.5265	23	24441889	25632144	290	0.7505	LARGE-GAIN	FOCAL	4	"ARX,PCYT1B,PDK3,POLA1"
TCGA.AA.A00D.01A	23	24712011	24766379	25	1.177	LARGE-GAIN	FOCAL	1	POLA1
TCGA.AG.A00C.01A	23	24717525	24745043	13	0.972	LARGE-GAIN	FOCAL	1	POLA1
TCGA.AG.3906.01A	23	24948522	25028313	3	1.0669	LARGE-GAIN	FOCAL	2	"ARX,POLA1"
TCGA.DT.5265	23	25632394	25687288	12	1.4729	LARGE-GAIN	FOCAL	0	None
TCGA.DT.5265	23	25814595	27686430	551	1.4805	LARGE-GAIN	FOCAL	3	"MAGEB18,MAGEB5,MAGEB6"
TCGA.AG.4022	23	26960340	27064145	31	0.9273	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	23	30683567	30737518	14	0.9941	LARGE-GAIN	FOCAL	1	GK
TCGA.AA.A00N.01A	23	31144705	37026435	136	0.9413	LARGE-GAIN	FOCAL	7	"CFAP47,DMD,FAM47A,FAM47B,FAM47C,MAGEB16,TMEM47"
TCGA.AA.A017.01A	23	31152174	31165391	3	1.3613	LARGE-GAIN	FOCAL	1	DMD
TCGA.AY.A71X	23	35524242	35578960	10	1.3313	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	23	37706233	38037468	27	0.8774	LARGE-GAIN	FOCAL	4	"DYNLT3,HYPM,SRPX,SYTL5"
TCGA.AA.3841	23	37923810	39194228	454	1.1836	LARGE-GAIN	FOCAL	6	"MID1IP1,OTC,RPGR,SRPX,SYTL5,TSPAN7"
TCGA.AA.A00D.01A	23	38156500	38228993	13	1.0136	LARGE-GAIN	FOCAL	2	"OTC,RPGR"
TCGA.AG.A00C.01A	23	38156500	38240576	14	0.7129	LARGE-GAIN	FOCAL	2	"OTC,RPGR"
TCGA.AA.A00N.01A	23	38186507	38546791	15	0.7321	LARGE-GAIN	FOCAL	3	"OTC,RPGR,TSPAN7"
TCGA.CK.5914.01A	23	38228993	38546791	14	0.8143	LARGE-GAIN	FOCAL	2	"OTC,TSPAN7"
TCGA.AA.3841	23	39198050	39252818	33	0.8864	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3930.01A	23	39923552	39937062	6	0.6806	LARGE-GAIN	FOCAL	1	BCOR
TCGA.AG.A00C.01A	23	39930195	40518432	23	0.8654	LARGE-GAIN	FOCAL	5	"ATP6AP2,BCOR,CXorf38,MED14,MPC1L"
TCGA.AA.A00D.01A	23	39930820	41047196	64	1.0052	LARGE-GAIN	FOCAL	7	"ATP6AP2,BCOR,CXorf38,MED14,MED14OS,MPC1L,USP9X"
TCGA.AA.A00Q.01A	23	40988216	41307064	41	1.3432	LARGE-GAIN	FOCAL	3	"DDX3X,NYX,USP9X"
TCGA.AA.A00D.01A	23	41048535	41205432	18	1.418	LARGE-GAIN	FOCAL	2	"DDX3X,USP9X"
TCGA.AG.A00C.01A	23	41055456	41307064	32	0.7758	LARGE-GAIN	FOCAL	3	"DDX3X,NYX,USP9X"
TCGA.AA.A00N.01A	23	41554839	44833869	64	0.7016	LARGE-GAIN	FOCAL	10	"CASK,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,KDM6A,MAOA,MAOB,NDP"
TCGA.CK.5914.01A	23	43515538	43809055	30	0.7752	LARGE-GAIN	FOCAL	3	"MAOA,MAOB,NDP"
TCGA.AA.3941	23	44338947	44572769	43	0.7943	LARGE-GAIN	FOCAL	1	FUNDC1
TCGA.AG.3906.01A	23	44894117	44896820	2	1.153	LARGE-GAIN	FOCAL	1	KDM6A
TCGA.CK.5914.01A	23	46322161	46696487	26	0.7143	LARGE-GAIN	FOCAL	5	"CHST7,KRBOX4,RP2,SLC9A7,ZNF674"
TCGA.5M.AAT5	23	46599387	46614880	3	1.4149	LARGE-GAIN	FOCAL	1	SLC9A7
TCGA.AF.A56L	23	46599387	46614880	3	1.4458	LARGE-GAIN	FOCAL	1	SLC9A7
TCGA.QL.A97D	23	46599387	46614880	3	1.6566	LARGE-GAIN	FOCAL	1	SLC9A7
TCGA.AA.A00D.01A	23	46915437	46952224	8	1.2733	LARGE-GAIN	FOCAL	2	"JADE3,RGN"
TCGA.AG.A00C.01A	23	47774333	47976386	18	0.6992	LARGE-GAIN	FOCAL	5	"SPACA5,SPACA5B,ZNF182,ZNF630,ZNF81"
TCGA.AA.3967.01A	23	47774333	48270161	41	1.1799	LARGE-GAIN	FOCAL	10	"SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,ZNF182,ZNF630,ZNF81"
TCGA.AA.A00Q.01A	23	47861854	48317870	32	0.9069	LARGE-GAIN	FOCAL	10	"SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,ZNF182,ZNF630"
TCGA.AA.3861.01A	23	47920148	48317268	30	2.2252	LARGE-GAIN	FOCAL	9	"SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,ZNF630"
TCGA.AA.3862.01A	23	47926171	48317268	30	1.8993	LARGE-GAIN	FOCAL	9	"SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,ZNF630"
TCGA.AA.A00N.01A	23	48047015	48214554	20	0.8043	LARGE-GAIN	FOCAL	3	"SSX1,SSX3,SSX5"
TCGA.CK.5914.01A	23	48053536	48214554	18	1.4229	LARGE-GAIN	FOCAL	3	"SSX1,SSX3,SSX5"
TCGA.AA.A017.01A	23	48156223	48163010	4	0.6982	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	23	48244046	48319345	7	0.7731	LARGE-GAIN	FOCAL	3	"SLC38A5,SSX4,SSX4B"
TCGA.AA.A00N.01A	23	48317268	48340744	15	1.0168	LARGE-GAIN	FOCAL	2	"FTSJ1,SLC38A5"
TCGA.AG.A01W.01A	23	48442206	48450736	4	1.1753	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	23	48456315	48463189	7	0.8372	LARGE-GAIN	FOCAL	1	WDR13
TCGA.A6.3808.01A	23	48834621	48844470	7	2.8025	LARGE-GAIN	FOCAL	1	GRIPAP1
TCGA.AG.4009.01A	23	48834621	48897935	22	0.8592	LARGE-GAIN	FOCAL	2	"GRIPAP1,TFE3"
TCGA.AA.A00N.01A	23	48844157	48887620	10	0.7401	LARGE-GAIN	FOCAL	2	"GRIPAP1,TFE3"
TCGA.AA.A00L.01A	23	48932445	48979865	12	1.2255	LARGE-GAIN	FOCAL	2	"GPKOW,WDR45"
TCGA.AA.A00N.01A	23	48970517	48979865	8	0.7676	LARGE-GAIN	FOCAL	1	GPKOW
TCGA.AG.4009.01A	23	48970517	48979865	8	1.0093	LARGE-GAIN	FOCAL	1	GPKOW
TCGA.AA.A00L.01A	23	49028337	49062044	20	0.699	LARGE-GAIN	FOCAL	4	"CACNA1F,PLP2,PRICKLE3,SYP"
TCGA.AA.A00L.01A	23	49062965	49081204	26	1.4311	LARGE-GAIN	FOCAL	1	CACNA1F
TCGA.AA.A00D.01A	23	49064938	49075769	18	1.3443	LARGE-GAIN	FOCAL	1	CACNA1F
TCGA.AA.A00A.01A	23	49067745	49081204	17	0.7156	LARGE-GAIN	FOCAL	1	CACNA1F
TCGA.AA.A00L.01A	23	49082344	49103144	14	0.7759	LARGE-GAIN	FOCAL	2	"CACNA1F,CCDC22"
TCGA.CK.5914.01A	23	49767731	49955562	21	0.6811	LARGE-GAIN	FOCAL	2	"AKAP4,CLCN5"
TCGA.AA.A02H.01A	23	49767731	50146442	61	0.8429	LARGE-GAIN	FOCAL	4	"AKAP4,CCNB3,CLCN5,DGKK"
TCGA.AG.A01N.01A	23	49850590	50135302	45	1.3301	LARGE-GAIN	FOCAL	4	"AKAP4,CCNB3,CLCN5,DGKK"
TCGA.CK.5914.01A	23	50037825	50135302	28	0.8282	LARGE-GAIN	FOCAL	2	"CCNB3,DGKK"
TCGA.AG.A01N.01A	23	50136112	51075787	23	1.0273	LARGE-GAIN	FOCAL	4	"BMP15,DGKK,NUDT10,SHROOM4"
TCGA.CK.5914.01A	23	50212986	50659396	14	0.8209	LARGE-GAIN	FOCAL	3	"BMP15,DGKK,SHROOM4"
TCGA.AZ.4614	23	51468422	51776174	49	0.9308	LARGE-GAIN	FOCAL	2	"GSPT2,MAGED1"
TCGA.AZ.4614	23	51820568	51885637	17	1.6584	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	23	52674461	52826270	8	1.0731	LARGE-GAIN	FOCAL	4	"SPANXN5,SSX2,SSX2B,SSX7"
TCGA.AG.3906.01A	23	52841580	52847175	4	0.9001	LARGE-GAIN	FOCAL	1	XAGE5
TCGA.AG.A01W.01A	23	53122499	53133645	5	0.6833	LARGE-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	23	53222207	53460631	56	0.7215	LARGE-GAIN	FOCAL	5	"HSD17B10,IQSEC2,KDM5C,RIBC1,SMC1A"
TCGA.AG.3906.01A	23	53560219	53562298	4	0.8515	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.AA.A00N.01A	23	53562298	53579577	16	1.0079	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.CK.5914.01A	23	53564470	53589755	24	0.7261	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.AA.A00L.01A	23	53585579	53619376	27	0.7251	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.AG.3906.01A	23	53588687	53613393	17	0.8902	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.AG.A00C.01A	23	53590668	53672224	45	0.7242	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.AA.A00L.01A	23	53620302	53635740	9	1.2197	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.AA.A00L.01A	23	53641453	54022069	29	0.7657	LARGE-GAIN	FOCAL	2	"HUWE1,PHF8"
TCGA.AG.3906.01A	23	53643882	53661133	13	0.8941	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.AG.A01W.01A	23	53668245	53677869	10	0.8589	LARGE-GAIN	FOCAL	1	HUWE1
TCGA.AA.A00Q.01A	23	54106592	54470827	40	0.9882	LARGE-GAIN	FOCAL	3	"FAM120C,TSR2,WNK3"
TCGA.AG.3906.01A	23	54142929	54162885	6	0.9995	LARGE-GAIN	FOCAL	1	FAM120C
TCGA.AG.A00C.01A	23	54142929	54184067	8	0.7622	LARGE-GAIN	FOCAL	1	FAM120C
TCGA.AA.A00N.01A	23	54259227	54497716	37	0.8591	LARGE-GAIN	FOCAL	3	"FGD1,TSR2,WNK3"
TCGA.AG.A00C.01A	23	54558941	54569387	5	0.9308	LARGE-GAIN	FOCAL	1	GNL3L
TCGA.AA.A01Q.01A	23	55028633	55057295	15	0.7499	LARGE-GAIN	FOCAL	2	"ALAS2,APEX2"
TCGA.CK.5914.01A	23	55030185	55057295	14	1.0557	LARGE-GAIN	FOCAL	2	"ALAS2,APEX2"
TCGA.AG.A01N.01A	23	57336979	64141655	48	1.0639	LARGE-GAIN	FOCAL	9	"AMER1,ARHGEF9,ASB12,FAAH2,MTMR8,SPIN4,ZC4H2,ZXDA,ZXDB"
TCGA.DM.A280	23	58438009	62021732	4	1.0891	LARGE-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	23	62855147	62944392	10	1.1606	LARGE-GAIN	FOCAL	1	ARHGEF9
TCGA.CK.5914.01A	23	63551409	64743889	26	0.9771	LARGE-GAIN	FOCAL	4	"LAS1L,MTMR8,ZC3H12B,ZC4H2"
TCGA.A6.A56B	23	64326836	66136419	306	0.8615	LARGE-GAIN	FOCAL	6	"EDA2R,HEPH,LAS1L,MSN,VSIG4,ZC3H12B"
TCGA.AD.6899	23	64712386	65041827	35	1.0525	LARGE-GAIN	FOCAL	3	"LAS1L,MSN,ZC3H12B"
TCGA.AG.A01N.01A	23	64754333	65835720	49	1.3185	LARGE-GAIN	FOCAL	5	"EDA2R,HEPH,LAS1L,MSN,VSIG4"
TCGA.CK.5914.01A	23	64936633	65393432	24	1.1784	LARGE-GAIN	FOCAL	3	"HEPH,MSN,VSIG4"
TCGA.AF.3914.01A	23	64936633	65824204	45	0.8739	LARGE-GAIN	FOCAL	4	"EDA2R,HEPH,MSN,VSIG4"
TCGA.AD.6899	23	65043037	65433538	83	1.4407	LARGE-GAIN	FOCAL	2	"HEPH,VSIG4"
TCGA.CK.5914.01A	23	65427925	67292943	27	1.151	LARGE-GAIN	FOCAL	4	"AR,EDA2R,HEPH,OPHN1"
TCGA.AA.A017.01A	23	65479892	65835720	9	1.2769	LARGE-GAIN	FOCAL	2	"EDA2R,HEPH"
TCGA.AG.A01N.01A	23	67416979	67421415	2	1.2958	LARGE-GAIN	FOCAL	1	OPHN1
TCGA.AA.3844	23	68200295	68219270	12	0.8001	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3844	23	68233417	68600054	93	0.6988	LARGE-GAIN	FOCAL	1	PJA1
TCGA.AG.3893	23	68462376	68982625	106	0.8777	LARGE-GAIN	FOCAL	2	"EDA,FAM155B"
TCGA.CK.5914.01A	23	69080656	69269641	15	0.9152	LARGE-GAIN	FOCAL	2	"AWAT2,EDA"
TCGA.AA.A00N.01A	23	69385651	69478339	16	0.9635	LARGE-GAIN	FOCAL	4	"AWAT1,DGAT2L6,IGBP1,P2RY4"
TCGA.CK.5914.01A	23	69419069	69458012	11	1.0475	LARGE-GAIN	FOCAL	2	"AWAT1,DGAT2L6"
TCGA.AA.A00J.01A	23	69454482	69458012	5	1.8811	LARGE-GAIN	FOCAL	1	AWAT1
TCGA.AA.A00D.01A	23	69489178	69639880	54	0.9679	LARGE-GAIN	FOCAL	4	"ARR3,KIF4A,PDZD11,RAB41"
TCGA.AG.A00C.01A	23	69489178	69646699	61	0.6919	LARGE-GAIN	FOCAL	5	"ARR3,GDPD2,KIF4A,PDZD11,RAB41"
TCGA.AA.A00Q.01A	23	69516801	69639880	27	1.0239	LARGE-GAIN	FOCAL	1	KIF4A
TCGA.AA.A00L.01A	23	69644808	69674022	19	0.8814	LARGE-GAIN	FOCAL	2	"DLG3,GDPD2"
TCGA.AA.A00J.01A	23	69645835	69646699	4	3.5419	LARGE-GAIN	FOCAL	1	GDPD2
TCGA.AG.3906.01A	23	69646699	69674022	14	0.9959	LARGE-GAIN	FOCAL	2	"DLG3,GDPD2"
TCGA.AA.A00D.01A	23	69646699	69749636	25	0.7055	LARGE-GAIN	FOCAL	3	"DLG3,GDPD2,TEX11"
TCGA.AG.A00C.01A	23	69649321	69652690	4	1.2651	LARGE-GAIN	FOCAL	1	GDPD2
TCGA.CK.5914.01A	23	69698962	69774452	17	0.7556	LARGE-GAIN	FOCAL	2	"DLG3,TEX11"
TCGA.AA.A00L.01A	23	69698962	70149468	46	1.3453	LARGE-GAIN	FOCAL	3	"DLG3,SLC7A3,TEX11"
TCGA.AA.3509.01A	23	69771939	69890175	12	1.9611	LARGE-GAIN	FOCAL	1	TEX11
TCGA.AZ.4684.01A	23	69771939	69890175	12	0.9038	LARGE-GAIN	FOCAL	1	TEX11
TCGA.AA.A00D.01A	23	69771939	69902477	15	1.063	LARGE-GAIN	FOCAL	1	TEX11
TCGA.AA.A00N.01A	23	69942408	70149468	20	0.773	LARGE-GAIN	FOCAL	2	"SLC7A3,TEX11"
TCGA.AA.A00L.01A	23	70280819	70320517	6	0.689	LARGE-GAIN	FOCAL	2	"FOXO4,SNX12"
TCGA.AG.4009.01A	23	70316328	70510447	84	0.9084	LARGE-GAIN	FOCAL	8	"CXorf65,FOXO4,GJB1,IL2RG,MED12,NLGN3,NONO,ZMYM3"
TCGA.AG.A014.01A	23	70627377	70678059	8	1.8577	LARGE-GAIN	FOCAL	1	TAF1
TCGA.AG.A014.01A	23	70678953	70814514	25	1.1318	LARGE-GAIN	FOCAL	3	"ACRC,OGT,TAF1"
TCGA.AG.A014.01A	23	70817768	70832665	8	1.378	LARGE-GAIN	FOCAL	1	ACRC
TCGA.AG.3906.01A	23	71349704	71416584	11	0.7923	LARGE-GAIN	FOCAL	4	"FLJ44635,NHSL2,PIN4,RGAG4"
TCGA.AG.A014.01A	23	71358251	71521526	18	1.2318	LARGE-GAIN	FOCAL	6	"CITED1,ERCC6L,FLJ44635,NHSL2,PIN4,RPS4X"
TCGA.AA.3509.01A	23	71424847	71458641	3	2.3272	LARGE-GAIN	FOCAL	2	"ERCC6L,PIN4"
TCGA.AA.3509.01A	23	71492584	71549817	13	1.0893	LARGE-GAIN	FOCAL	3	"CITED1,HDAC8,RPS4X"
TCGA.AA.A00N.01A	23	71571536	71710721	7	0.8341	LARGE-GAIN	FOCAL	1	HDAC8
TCGA.CK.5914.01A	23	71792454	71864195	19	0.7318	LARGE-GAIN	FOCAL	2	"HDAC8,PHKA1"
TCGA.AG.3906.01A	23	71885953	71932580	7	0.7109	LARGE-GAIN	FOCAL	1	PHKA1
TCGA.AG.A00C.01A	23	71885953	71933593	8	0.8057	LARGE-GAIN	FOCAL	1	PHKA1
TCGA.AA.A01Q.01A	23	72064900	72095038	5	1.0071	LARGE-GAIN	FOCAL	2	"DMRTC1,DMRTC1B"
TCGA.CK.5914.01A	23	72783074	72804202	3	1.2457	LARGE-GAIN	FOCAL	1	CHIC1
TCGA.CK.5914.01A	23	74282116	74523200	20	0.8976	LARGE-GAIN	FOCAL	2	"ABCB7,UPRT"
TCGA.SS.A7HO	23	74514455	76877876	395	0.7998	LARGE-GAIN	FOCAL	7	"ATRX,FGF16,MAGEE1,MAGEE2,PBDC1,UPRT,ZDHHC15"
TCGA.AA.3509.01A	23	76944264	77394293	58	1.1501	LARGE-GAIN	FOCAL	7	"ATP7A,ATRX,COX7B,MAGT1,PGAM4,PGK1,TAF9B"
TCGA.AA.A00N.01A	23	77394986	79952200	36	0.7237	LARGE-GAIN	FOCAL	10	"BRWD3,CYSLTR1,FAM46D,GPR174,ITM2A,LPAR4,P2RY10,TAF9B,TBX22,ZCCHC5"
TCGA.AZ.4684.01A	23	77528188	78622554	12	1.1436	LARGE-GAIN	FOCAL	6	"CYSLTR1,GPR174,ITM2A,LPAR4,P2RY10,ZCCHC5"
TCGA.AA.A00D.01A	23	79283445	80063966	39	1.0553	LARGE-GAIN	FOCAL	3	"BRWD3,FAM46D,TBX22"
TCGA.AZ.4684.01A	23	79697992	80001057	29	1.7956	LARGE-GAIN	FOCAL	2	"BRWD3,FAM46D"
TCGA.AA.A00N.01A	23	79984206	83390062	46	0.815	LARGE-GAIN	FOCAL	6	"BRWD3,CYLC1,HMGN5,POU3F4,RPS6KA6,SH3BGRL"
TCGA.AA.A01Q.01A	23	80063966	80064743	3	0.9793	LARGE-GAIN	FOCAL	1	BRWD3
TCGA.AA.3509.01A	23	83124827	83400428	17	2.8517	LARGE-GAIN	FOCAL	2	"CYLC1,RPS6KA6"
TCGA.AA.3509.01A	23	83401955	84510228	30	1.8751	LARGE-GAIN	FOCAL	5	"APOOL,HDX,RPS6KA6,SATL1,ZNF711"
TCGA.AA.A00N.01A	23	83480709	84362627	23	0.97	LARGE-GAIN	FOCAL	3	"APOOL,HDX,SATL1"
TCGA.AY.A54L.01A	23	83599208	86887158	80	0.856	LARGE-GAIN	FOCAL	8	"APOOL,CHM,DACH2,HDX,KLHL4,POF1B,SATL1,ZNF711"
TCGA.DC.6158	23	83729381	83818788	38	1.465	LARGE-GAIN	FOCAL	1	HDX
TCGA.DC.6158	23	83818865	88430562	1424	1.1029	LARGE-GAIN	FOCAL	8	"APOOL,CHM,CPXCR1,DACH2,KLHL4,POF1B,SATL1,ZNF711"
TCGA.AA.A024.01A	23	84349087	84349866	2	2.3582	LARGE-GAIN	FOCAL	1	SATL1
TCGA.AA.A00D.01A	23	84502522	84558382	10	1.1333	LARGE-GAIN	FOCAL	2	"POF1B,ZNF711"
TCGA.AA.3509.01A	23	84519234	85213829	28	2.6317	LARGE-GAIN	FOCAL	3	"CHM,POF1B,ZNF711"
TCGA.AA.A00N.01A	23	84558382	85166233	23	0.7144	LARGE-GAIN	FOCAL	2	"CHM,POF1B"
TCGA.AG.A00C.01A	23	85211128	85236677	6	0.6996	LARGE-GAIN	FOCAL	1	CHM
TCGA.AA.3494	23	88444083	89231832	90	0.8344	LARGE-GAIN	FOCAL	1	TGIF2LX
TCGA.G5.6235	23	88444179	89231832	91	0.9093	LARGE-GAIN	FOCAL	1	TGIF2LX
TCGA.DM.A1DB	23	88444496	89232331	90	0.8045	LARGE-GAIN	FOCAL	1	TGIF2LX
TCGA.EI.7002	23	88468320	88518436	7	1.4647	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.6601	23	88468320	89232331	88	0.9533	LARGE-GAIN	FOCAL	1	TGIF2LX
TCGA.A6.5660	23	88468320	90287714	201	1.0291	LARGE-GAIN	FOCAL	1	TGIF2LX
TCGA.AA.3495	23	88499791	90282937	201	0.7127	LARGE-GAIN	FOCAL	1	TGIF2LX
TCGA.EI.7002	23	88520898	90173518	178	0.7747	LARGE-GAIN	FOCAL	1	TGIF2LX
TCGA.D5.6532	23	88583016	90052676	163	1.2733	LARGE-GAIN	FOCAL	1	TGIF2LX
TCGA.D5.6923	23	88588770	91685123	433	1.0428	LARGE-GAIN	FOCAL	3	"PABPC5,PCDH11X,TGIF2LX"
TCGA.DM.A1DB	23	89235807	89348914	29	1.4033	LARGE-GAIN	FOCAL	0	None
TCGA.D5.6931	23	89235807	90770463	240	1.0545	LARGE-GAIN	FOCAL	1	PABPC5
TCGA.DM.A1DB	23	89349346	90282937	86	0.7334	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3494	23	89365892	90015955	60	0.8802	LARGE-GAIN	FOCAL	0	None
TCGA.G5.6235	23	89365892	90282937	86	0.9414	LARGE-GAIN	FOCAL	0	None
TCGA.AZ.6601	23	89538070	90282937	70	0.9415	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3494	23	90173518	90282937	18	1.2038	LARGE-GAIN	FOCAL	0	None
TCGA.EI.7002	23	90173773	90282937	15	1.1858	LARGE-GAIN	FOCAL	0	None
TCGA.AD.A5EK	23	90263065	90710558	120	0.8288	LARGE-GAIN	FOCAL	1	PABPC5
TCGA.AA.A02Y	23	90263065	90748416	128	0.8035	LARGE-GAIN	FOCAL	1	PABPC5
TCGA.G4.6294	23	90281494	90751925	127	0.977	LARGE-GAIN	FOCAL	1	PABPC5
TCGA.DM.A1DB	23	90287714	90751925	125	1.2198	LARGE-GAIN	FOCAL	1	PABPC5
TCGA.F5.6810	23	90483758	90733230	76	0.7336	LARGE-GAIN	FOCAL	1	PABPC5
TCGA.AA.3841	23	90711994	92358344	179	0.7604	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.D5.6529	23	90751925	91427082	53	0.7798	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.AH.6903	23	90753246	91427082	51	0.7818	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.G5.6641	23	90753246	91427082	52	0.8218	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.AZ.6601	23	90753246	91430328	53	0.9512	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.DC.5337	23	90753246	91430328	53	1.2126	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.DM.A1DB	23	90753246	91430328	53	0.6795	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.5M.AAT4	23	91335410	91642140	92	0.6954	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.G4.6294	23	91426770	91619824	76	0.971	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.AG.4008	23	91426858	91556891	68	0.9456	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.AH.6897	23	91430328	91685123	79	0.8225	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.AA.A02Y	23	91431002	91556778	66	0.7245	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.DC.5337	23	91431002	91556778	66	0.8426	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.D5.6931	23	91431106	91454140	23	1.1004	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.DM.A1DB	23	91431106	91539791	61	1.1635	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.AD.A5EK	23	91442673	91520729	44	0.9194	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.DM.A1DB	23	91550956	92364167	64	0.837	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.DC.5337	23	91556891	92363599	57	1.2676	LARGE-GAIN	FOCAL	1	PCDH11X
TCGA.DM.A28G	23	95536546	96033583	149	0.7795	LARGE-GAIN	FOCAL	1	DIAPH2
TCGA.CM.6678	23	95747882	96044911	88	1.0185	LARGE-GAIN	FOCAL	1	DIAPH2
TCGA.DY.A1DF	23	95845154	100087556	962	0.865	LARGE-GAIN	FOCAL	8	"CSTF2,DIAPH2,PCDH19,RPA4,SRPX2,SYTL4,TNMD,TSPAN6"
TCGA.AA.3509.01A	23	96167273	96192181	5	3.2054	LARGE-GAIN	FOCAL	1	DIAPH2
TCGA.AA.3509.01A	23	96194226	99852451	28	1.7636	LARGE-GAIN	FOCAL	3	"DIAPH2,PCDH19,TNMD"
TCGA.5M.AATE	23	96487996	96655021	22	1.5191	LARGE-GAIN	FOCAL	1	DIAPH2
TCGA.AA.A00L.01A	23	99839953	99890514	13	1.5967	LARGE-GAIN	FOCAL	2	"TNMD,TSPAN6"
TCGA.AA.A00N.01A	23	99917136	100183007	50	0.8358	LARGE-GAIN	FOCAL	5	"CSTF2,NOX1,SRPX2,SYTL4,XKRX"
TCGA.AA.3939.01A	23	99921702	100509377	101	0.6804	LARGE-GAIN	FOCAL	10	"ARL13A,CENPI,CSTF2,DRP2,NOX1,SRPX2,SYTL4,TMEM35,TRMT2B,XKRX"
TCGA.AA.A00N.01A	23	100265538	100278410	7	0.7156	LARGE-GAIN	FOCAL	1	TRMT2B
TCGA.AA.A00N.01A	23	100333952	100524103	43	0.7575	LARGE-GAIN	FOCAL	4	"CENPI,DRP2,TAF7L,TMEM35"
TCGA.CK.5914.01A	23	100375664	100530143	37	0.8325	LARGE-GAIN	FOCAL	3	"CENPI,DRP2,TAF7L"
TCGA.AA.3939.01A	23	100524103	100608807	18	0.7372	LARGE-GAIN	FOCAL	3	"BTK,TAF7L,TIMM8A"
TCGA.AA.3939.01A	23	100609569	100653349	23	1.0924	LARGE-GAIN	FOCAL	4	"BTK,GLA,RPL36A,RPL36A-HNRNPH2"
TCGA.AG.A014.01A	23	100645934	100646975	4	2.4419	LARGE-GAIN	FOCAL	2	"RPL36A,RPL36A-HNRNPH2"
TCGA.CK.5914.01A	23	101087180	101141557	13	0.8471	LARGE-GAIN	FOCAL	2	"NXF5,ZMAT1"
TCGA.AA.A00Q.01A	23	101572755	101578596	8	1.4054	LARGE-GAIN	FOCAL	2	"NXF2,NXF2B"
TCGA.AG.A014.01A	23	102332531	102471032	12	2.6391	LARGE-GAIN	FOCAL	2	"BEX4,NXF3"
TCGA.AA.A00L.01A	23	102586350	102968398	11	1.5612	LARGE-GAIN	FOCAL	10	"GLRA4,MORF4L2,NGFRAP1,RAB40A,TCEAL1,TCEAL3,TCEAL4,TCEAL7,TMEM31,WBP5"
TCGA.CK.5914.01A	23	102973937	103045392	14	0.9561	LARGE-GAIN	FOCAL	2	"GLRA4,PLP1"
TCGA.AA.A017.01A	23	102973937	103080088	14	0.7454	LARGE-GAIN	FOCAL	3	"GLRA4,PLP1,RAB9B"
TCGA.AA.3967.01A	23	103267705	105149221	39	0.7467	LARGE-GAIN	FOCAL	9	"ESX1,FAM199X,H2BFM,H2BFWT,IL1RAPL2,NRK,SLC25A53,TEX13A,ZCCHC18"
TCGA.AA.A03F	23	103268332	103329000	8	0.8192	LARGE-GAIN	FOCAL	1	H2BFM
TCGA.AG.3906.01A	23	103494867	103499408	5	1.2976	LARGE-GAIN	FOCAL	1	ESX1
TCGA.AZ.4684.01A	23	104512022	106083883	70	1.1234	LARGE-GAIN	FOCAL	7	"CXorf57,IL1RAPL2,MUM1L1,NRK,RNF128,SERPINA7,TBC1D8B"
TCGA.AA.3679	23	104561199	104785858	32	1.3625	LARGE-GAIN	FOCAL	1	IL1RAPL2
TCGA.AA.A00Q.01A	23	105855524	106116782	42	0.9956	LARGE-GAIN	FOCAL	3	"CXorf57,RNF128,TBC1D8B"
TCGA.AA.A00D.01A	23	105855524	106224523	55	0.7959	LARGE-GAIN	FOCAL	6	"CLDN2,CXorf57,MORC4,RIPPLY1,RNF128,TBC1D8B"
TCGA.AA.A00L.01A	23	105855524	106486382	74	1.2744	LARGE-GAIN	FOCAL	9	"CLDN2,CXorf57,MORC4,NUP62CL,PIH1D3,RBM41,RIPPLY1,RNF128,TBC1D8B"
TCGA.AZ.4684.01A	23	106091375	106465942	51	0.7073	LARGE-GAIN	FOCAL	7	"CLDN2,MORC4,NUP62CL,PIH1D3,RBM41,RIPPLY1,TBC1D8B"
TCGA.AA.A00D.01A	23	106228304	106486382	19	1.1407	LARGE-GAIN	FOCAL	4	"MORC4,NUP62CL,PIH1D3,RBM41"
TCGA.AA.A00Q.01A	23	106410842	106486382	8	1.1054	LARGE-GAIN	FOCAL	2	"NUP62CL,PIH1D3"
TCGA.AA.A00N.01A	23	106456074	106819506	19	1.0697	LARGE-GAIN	FOCAL	2	"FRMPD3,PIH1D3"
TCGA.AA.A00D.01A	23	106515863	107396158	47	0.7926	LARGE-GAIN	FOCAL	8	"ATG4A,FRMPD3,MID2,PRPS1,PSMD10,TEX13B,TSC22D3,VSIG1"
TCGA.CK.5914.01A	23	106769855	106819506	12	1.0245	LARGE-GAIN	FOCAL	1	FRMPD3
TCGA.AG.3909.01A	23	106788950	106819506	9	0.712	LARGE-GAIN	FOCAL	1	FRMPD3
TCGA.AA.A00K.01A	23	106885548	106893120	4	2.4768	LARGE-GAIN	FOCAL	1	PRPS1
TCGA.AA.A00N.01A	23	107224298	107396809	24	1.0191	LARGE-GAIN	FOCAL	4	"ATG4A,PSMD10,TEX13B,VSIG1"
TCGA.AA.3967.01A	23	107334980	107464433	51	1.1141	LARGE-GAIN	FOCAL	2	"ATG4A,COL4A6"
TCGA.AA.A00N.01A	23	107400193	107413112	10	2.1249	LARGE-GAIN	FOCAL	1	COL4A6
TCGA.CK.5914.01A	23	107400193	107457313	38	1.2791	LARGE-GAIN	FOCAL	1	COL4A6
TCGA.AA.A00N.01A	23	107413812	107938448	80	1.0722	LARGE-GAIN	FOCAL	2	"COL4A5,COL4A6"
TCGA.AA.A00D.01A	23	107433570	108718406	88	0.8279	LARGE-GAIN	FOCAL	4	"COL4A5,COL4A6,GUCY2F,IRS4"
TCGA.CK.5914.01A	23	107462874	108718406	76	0.6788	LARGE-GAIN	FOCAL	4	"COL4A5,COL4A6,GUCY2F,IRS4"
TCGA.AG.3611.01A	23	107816755	107821153	3	0.6913	LARGE-GAIN	FOCAL	1	COL4A5
TCGA.AA.3973	23	108607078	108682300	19	0.7031	LARGE-GAIN	FOCAL	1	GUCY2F
TCGA.AA.A00N.01A	23	108619074	108867794	23	0.7545	LARGE-GAIN	FOCAL	3	"GUCY2F,KCNE5,NXT2"
TCGA.AA.A00D.01A	23	108779063	109246971	20	1.1135	LARGE-GAIN	FOCAL	4	"ACSL4,KCNE5,NXT2,TMEM164"
TCGA.AG.A00C.01A	23	108887211	109246971	14	0.6814	LARGE-GAIN	FOCAL	2	"ACSL4,TMEM164"
TCGA.AA.A00N.01A	23	109246971	110489763	42	0.7036	LARGE-GAIN	FOCAL	6	"AMMECR1,CAPN6,CHRDL1,PAK3,RGAG1,TMEM164"
TCGA.CK.5914.01A	23	109246971	110494758	50	0.6982	LARGE-GAIN	FOCAL	6	"AMMECR1,CAPN6,CHRDL1,PAK3,RGAG1,TMEM164"
TCGA.AA.A00K.01A	23	110489763	110497450	10	1.3811	LARGE-GAIN	FOCAL	1	CAPN6
TCGA.AA.A00N.01A	23	110544843	110924388	8	1.3226	LARGE-GAIN	FOCAL	2	"ALG13,DCX"
TCGA.CK.5914.01A	23	110544843	110924388	8	0.9364	LARGE-GAIN	FOCAL	2	"ALG13,DCX"
TCGA.AA.A017.01A	23	110555821	110653224	5	0.8521	LARGE-GAIN	FOCAL	1	DCX
TCGA.AA.A00N.01A	23	110951208	114400367	76	0.9367	LARGE-GAIN	FOCAL	9	"ALG13,AMOT,HTR2C,IL13RA2,LHFPL1,LRCH2,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AA.A017.01A	23	110966999	110987866	10	0.788	LARGE-GAIN	FOCAL	1	ALG13
TCGA.D5.6931	23	111797118	111798131	3	2.2995	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	23	114242474	114414011	18	2.4536	LARGE-GAIN	FOCAL	2	"IL13RA2,LRCH2"
TCGA.AZ.4684.01A	23	114242474	114414011	18	1.354	LARGE-GAIN	FOCAL	2	"IL13RA2,LRCH2"
TCGA.DM.A28M.01A	23	114398190	114400765	4	2.0025	LARGE-GAIN	FOCAL	1	LRCH2
TCGA.DM.A282.01A	23	114399896	114400765	3	1.1994	LARGE-GAIN	FOCAL	1	LRCH2
TCGA.AA.3509.01A	23	114418927	115573828	31	1.497	LARGE-GAIN	FOCAL	6	"AGTR2,LRCH2,LUZP4,PLS3,RBMXL3,SLC6A14"
TCGA.AA.A00A.01A	23	114524275	114880685	16	0.8239	LARGE-GAIN	FOCAL	2	"LUZP4,PLS3"
TCGA.AA.A00N.01A	23	114844512	117819630	110	0.7122	LARGE-GAIN	FOCAL	7	"AGTR2,CT83,DOCK11,KLHL13,PLS3,SLC6A14,WDR44"
TCGA.AZ.4684.01A	23	115303486	117032830	19	1.1326	LARGE-GAIN	FOCAL	4	"AGTR2,CT83,KLHL13,SLC6A14"
TCGA.A6.3808.01A	23	115567805	115588783	13	1.497	LARGE-GAIN	FOCAL	1	SLC6A14
TCGA.DM.A28M.01A	23	115572084	115592860	12	1.17	LARGE-GAIN	FOCAL	2	"CT83,SLC6A14"
TCGA.AA.3509.01A	23	115574784	117032830	13	2.3863	LARGE-GAIN	FOCAL	3	"CT83,KLHL13,SLC6A14"
TCGA.CK.5914.01A	23	115576048	117043267	14	0.8914	LARGE-GAIN	FOCAL	3	"CT83,KLHL13,SLC6A14"
TCGA.AA.3973	23	116202738	116542964	128	0.9666	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3973	23	116543551	116544309	5	2.0895	LARGE-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	23	117752476	117819630	21	2.5597	LARGE-GAIN	FOCAL	1	DOCK11
TCGA.AG.A00C.01A	23	117874933	118227911	30	0.6851	LARGE-GAIN	FOCAL	4	"IL13RA1,KIAA1210,LONRF3,ZCCHC12"
TCGA.AG.A00C.01A	23	118374235	118763239	29	0.7659	LARGE-GAIN	FOCAL	7	"CXorf56,NKRF,PGRMC1,SEPT6,SLC25A43,SLC25A5,UBE2A"
TCGA.AZ.4684.01A	23	119292884	119390823	7	1.4878	LARGE-GAIN	FOCAL	3	"RHOXF2,RHOXF2B,ZBTB33"
TCGA.AA.3509.01A	23	119387274	119390823	5	3.1944	LARGE-GAIN	FOCAL	1	ZBTB33
TCGA.AA.A00N.01A	23	119410702	119674183	38	0.6912	LARGE-GAIN	FOCAL	4	"ATP1B4,CUL4B,LAMP2,TMEM255A"
TCGA.AA.A00N.01A	23	122250769	122532440	10	1.3365	LARGE-GAIN	FOCAL	1	GRIA3
TCGA.CK.5914.01A	23	122336436	122820351	45	0.7125	LARGE-GAIN	FOCAL	2	"GRIA3,THOC2"
TCGA.AA.A00D.01A	23	122598714	123505122	43	1.1935	LARGE-GAIN	FOCAL	5	"GRIA3,SH2D1A,STAG2,THOC2,XIAP"
TCGA.AA.3941	23	122921300	123148008	38	1.0395	LARGE-GAIN	FOCAL	2	"STAG2,XIAP"
TCGA.AA.A00Q.01A	23	123019476	123196730	21	1.1976	LARGE-GAIN	FOCAL	2	"STAG2,XIAP"
TCGA.AA.A00N.01A	23	123156398	124097334	66	0.8789	LARGE-GAIN	FOCAL	3	"SH2D1A,STAG2,TENM1"
TCGA.AA.A00Q.01A	23	123197681	128720932	94	0.7028	LARGE-GAIN	FOCAL	10	"ACTRT1,DCAF12L1,DCAF12L2,LOC100129520,OCRL,PRR32,SH2D1A,SMARCA1,STAG2,TENM1"
TCGA.CK.5914.01A	23	123204995	124029793	45	0.7336	LARGE-GAIN	FOCAL	3	"SH2D1A,STAG2,TENM1"
TCGA.F5.6810	23	123392928	123703072	102	0.7011	LARGE-GAIN	FOCAL	2	"SH2D1A,TENM1"
TCGA.AA.A00L.01A	23	123480444	124097334	35	1.0217	LARGE-GAIN	FOCAL	2	"SH2D1A,TENM1"
TCGA.AA.A00K.01A	23	123514404	127185008	37	0.6795	LARGE-GAIN	FOCAL	6	"ACTRT1,DCAF12L1,DCAF12L2,LOC100129520,PRR32,TENM1"
TCGA.F5.6810	23	123706486	123709305	5	1.6936	LARGE-GAIN	FOCAL	1	TENM1
TCGA.DC.6155	23	124699212	124719293	6	1.035	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	23	125686561	128631785	17	0.9818	LARGE-GAIN	FOCAL	4	"ACTRT1,DCAF12L1,PRR32,SMARCA1"
TCGA.CK.5914.01A	23	125954642	128626962	13	0.7122	LARGE-GAIN	FOCAL	3	"ACTRT1,PRR32,SMARCA1"
TCGA.G4.6294	23	127411651	128463673	306	0.8426	LARGE-GAIN	FOCAL	0	None
TCGA.G4.6294	23	128493158	128595668	25	1.3224	LARGE-GAIN	FOCAL	1	SMARCA1
TCGA.AA.A00K.01A	23	128582234	128695129	30	0.9828	LARGE-GAIN	FOCAL	2	"OCRL,SMARCA1"
TCGA.AA.A00D.01A	23	128633682	128709867	23	0.9818	LARGE-GAIN	FOCAL	2	"OCRL,SMARCA1"
TCGA.AA.3975	23	128659501	128794077	41	1.558	LARGE-GAIN	FOCAL	2	"APLN,OCRL"
TCGA.CK.5914.01A	23	128718256	128876032	10	0.8327	LARGE-GAIN	FOCAL	3	"APLN,OCRL,XPNPEP2"
TCGA.CK.5914.01A	23	128887083	128893087	5	1.1275	LARGE-GAIN	FOCAL	1	XPNPEP2
TCGA.AA.A00N.01A	23	128890398	128940325	17	0.8921	LARGE-GAIN	FOCAL	3	"SASH3,XPNPEP2,ZDHHC9"
TCGA.AA.A010.01A	23	128924864	128927600	5	0.8189	LARGE-GAIN	FOCAL	1	SASH3
TCGA.AA.A00Q.01A	23	128944828	129063300	20	1.0158	LARGE-GAIN	FOCAL	2	"UTP14A,ZDHHC9"
TCGA.AA.A00D.01A	23	128946657	129499468	78	0.9043	LARGE-GAIN	FOCAL	8	"AIFM1,BCORL1,ELF4,RAB33A,SLC25A14,UTP14A,ZDHHC9,ZNF280C"
TCGA.AA.A00Q.01A	23	129338858	129546368	27	0.9109	LARGE-GAIN	FOCAL	4	"GPR119,RBMX2,SLC25A14,ZNF280C"
TCGA.CK.5914.01A	23	129343602	129377505	12	0.826	LARGE-GAIN	FOCAL	1	ZNF280C
TCGA.CK.5914.01A	23	129499468	129535908	5	0.7016	LARGE-GAIN	FOCAL	2	"GPR119,SLC25A14"
TCGA.CK.5914.01A	23	129813478	129843140	4	0.9855	LARGE-GAIN	FOCAL	1	ENOX2
TCGA.AG.A00C.01A	23	130215613	130220273	9	0.8176	LARGE-GAIN	FOCAL	1	ARHGAP36
TCGA.AA.A00N.01A	23	132436873	133119294	15	0.7578	LARGE-GAIN	FOCAL	2	"GPC3,GPC4"
TCGA.AG.A00C.01A	23	133303364	133379600	3	1.0816	LARGE-GAIN	FOCAL	1	CCDC160
TCGA.AA.A00Q.01A	23	133547488	133633983	12	1.1653	LARGE-GAIN	FOCAL	2	"HPRT1,PHF6"
TCGA.AG.A00C.01A	23	134481013	134494107	4	0.9986	LARGE-GAIN	FOCAL	1	ZNF449
TCGA.5M.AAT4	23	134741515	134749202	8	1.6712	LARGE-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	23	134994905	135080967	9	0.904	LARGE-GAIN	FOCAL	3	"MMGT1,SAGE1,SLC9A6"
TCGA.AA.A00N.01A	23	135288526	135291393	5	1.463	LARGE-GAIN	FOCAL	1	FHL1
TCGA.AG.3906.01A	23	135318354	135390910	6	0.7793	LARGE-GAIN	FOCAL	2	"ADGRG4,MAP7D3"
TCGA.AG.A01W.01A	23	135407484	135414140	6	0.7066	LARGE-GAIN	FOCAL	1	ADGRG4
TCGA.CK.5914.01A	23	135426509	135477502	16	0.9493	LARGE-GAIN	FOCAL	1	ADGRG4
TCGA.AG.3906.01A	23	135570233	135586473	9	0.8447	LARGE-GAIN	FOCAL	2	"BRS3,HTATSF1"
TCGA.AA.A00D.01A	23	135581710	135593660	9	1.5302	LARGE-GAIN	FOCAL	1	HTATSF1
TCGA.AZ.4684.01A	23	138444269	138819849	38	0.9739	LARGE-GAIN	FOCAL	3	"ATP11C,F9,MCF2"
TCGA.AA.3509.01A	23	138444269	138832136	42	2.0922	LARGE-GAIN	FOCAL	3	"ATP11C,F9,MCF2"
TCGA.AA.A00L.01A	23	138612876	138643633	7	1.3771	LARGE-GAIN	FOCAL	1	F9
TCGA.DM.A28M.01A	23	138619122	138832136	41	0.7179	LARGE-GAIN	FOCAL	3	"ATP11C,F9,MCF2"
TCGA.CK.5914.01A	23	138664535	138724551	25	1.0582	LARGE-GAIN	FOCAL	1	MCF2
TCGA.AA.A00L.01A	23	138664535	138871434	42	1.0497	LARGE-GAIN	FOCAL	2	"ATP11C,MCF2"
TCGA.CK.5914.01A	23	138810990	138845438	10	0.9751	LARGE-GAIN	FOCAL	1	ATP11C
TCGA.AA.A00L.01A	23	138878413	139047515	16	1.4396	LARGE-GAIN	FOCAL	2	"ATP11C,CXorf66"
TCGA.DC.6154	23	141112777	141163518	27	0.8662	LARGE-GAIN	FOCAL	0	None
TCGA.F5.6464	23	141875407	141887713	4	1.1849	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	23	145075731	146366121	18	1.0586	LARGE-GAIN	FOCAL	2	"CXorf51A,CXorf51B"
TCGA.AA.3861.01A	23	145076242	147018968	28	2.2887	LARGE-GAIN	FOCAL	3	"CXorf51A,CXorf51B,FMR1"
TCGA.AA.3509.01A	23	146340226	147019553	17	2.2644	LARGE-GAIN	FOCAL	1	FMR1
TCGA.AZ.4614	23	146715817	147972517	380	0.9743	LARGE-GAIN	FOCAL	3	"AFF2,FMR1,FMR1NB"
TCGA.AA.A00D.01A	23	146993625	147106338	20	1.2508	LARGE-GAIN	FOCAL	2	"FMR1,FMR1NB"
TCGA.AA.A00N.01A	23	147733482	148564275	22	0.7936	LARGE-GAIN	FOCAL	2	"AFF2,IDS"
TCGA.AG.A01L.01A	23	148794793	149012996	4	0.8557	LARGE-GAIN	FOCAL	6	"HSFX1,HSFX2,MAGEA11,MAGEA8,MAGEA9,MAGEA9B"
TCGA.AG.3891.01A	23	150154177	150156200	4	0.7252	LARGE-GAIN	FOCAL	1	HMGB3
TCGA.AG.3906.01A	23	150154177	150156200	4	1.671	LARGE-GAIN	FOCAL	1	HMGB3
TCGA.AG.A00C.01A	23	150154177	150773061	11	0.8486	LARGE-GAIN	FOCAL	4	"GPR50,HMGB3,PASD1,VMA21"
TCGA.DM.A1D0	23	150193477	150194062	5	1.4022	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00L.01A	23	150773061	150844422	14	1.232	LARGE-GAIN	FOCAL	1	PASD1
TCGA.AG.3906.01A	23	150867193	150868970	3	1.3583	LARGE-GAIN	FOCAL	1	PRRG3
TCGA.AA.A024.01A	23	151123135	151124133	2	2.0937	LARGE-GAIN	FOCAL	1	GABRE
TCGA.AA.A00Q.01A	23	151869324	151935783	11	0.9864	LARGE-GAIN	FOCAL	7	"CSAG1,CSAG3,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6"
TCGA.AG.A00C.01A	23	151996329	152014822	5	0.858	LARGE-GAIN	FOCAL	2	"CETN2,NSDHL"
TCGA.AG.A023.01A	23	152036067	152037387	2	3.9135	LARGE-GAIN	FOCAL	1	NSDHL
TCGA.A6.3808.01A	23	152128231	152138935	6	1.1749	LARGE-GAIN	FOCAL	1	ZNF185
TCGA.A6.6650	23	152376955	152558528	54	1.0173	LARGE-GAIN	FOCAL	1	MAGEA1
TCGA.AA.3530	23	152705316	152728154	9	1.5904	LARGE-GAIN	FOCAL	2	"HAUS7,TREX2"
TCGA.AG.A01W.01A	23	152713285	152724663	10	0.7437	LARGE-GAIN	FOCAL	1	HAUS7
TCGA.AG.3906.01A	23	152845409	152980965	17	1.4387	LARGE-GAIN	FOCAL	6	"ATP2B3,BCAP31,DUSP9,FAM58A,PNCK,SLC6A8"
TCGA.AG.3906.01A	23	153138603	153357623	57	0.9248	LARGE-GAIN	FOCAL	9	"ARHGAP4,AVPR2,HCFC1,IRAK1,L1CAM,MECP2,NAA10,RENBP,TMEM187"
TCGA.AA.A00L.01A	23	153297607	153557845	18	1.4473	LARGE-GAIN	FOCAL	6	"MECP2,OPN1LW,OPN1MW,OPN1MW2,TEX28,TKTL1"
TCGA.AG.3906.01A	23	153577712	153661200	37	1.0719	LARGE-GAIN	FOCAL	6	"ATP6AP1,DNASE1L1,EMD,FLNA,RPL10,TAZ"
TCGA.AA.3971	23	153582702	153690396	8	1.5555	LARGE-GAIN	FOCAL	9	"ATP6AP1,DNASE1L1,EMD,FAM50A,FLNA,GDI1,PLXNA3,RPL10,TAZ"
TCGA.AA.3982	23	153582702	153690396	8	1.653	LARGE-GAIN	FOCAL	9	"ATP6AP1,DNASE1L1,EMD,FAM50A,FLNA,GDI1,PLXNA3,RPL10,TAZ"
TCGA.AG.A00C.01A	23	153626776	153669395	31	0.8577	LARGE-GAIN	FOCAL	5	"ATP6AP1,DNASE1L1,GDI1,RPL10,TAZ"
TCGA.AG.3906.01A	23	153661937	153689439	16	1.9568	LARGE-GAIN	FOCAL	4	"ATP6AP1,FAM50A,GDI1,PLXNA3"
TCGA.AG.3891.01A	23	153662515	153689439	18	0.8305	LARGE-GAIN	FOCAL	4	"ATP6AP1,FAM50A,GDI1,PLXNA3"
TCGA.AG.3906.01A	23	153691713	153715809	12	1.2355	LARGE-GAIN	FOCAL	4	"LAGE3,PLXNA3,SLC10A3,UBL4A"
TCGA.CK.5914.01A	23	153906403	153991171	11	0.9329	LARGE-GAIN	FOCAL	2	"DKC1,GAB3"
TCGA.AA.A00N.01A	23	153924145	153991171	9	0.8257	LARGE-GAIN	FOCAL	2	"DKC1,GAB3"
TCGA.AG.A01W.01A	23	153943266	153953704	5	0.9962	LARGE-GAIN	FOCAL	1	GAB3
TCGA.AA.A00D.01A	23	153993116	154012246	19	1.5105	LARGE-GAIN	FOCAL	2	"DKC1,MPP1"
TCGA.AG.A00C.01A	23	153993116	154012246	19	1.0241	LARGE-GAIN	FOCAL	2	"DKC1,MPP1"
TCGA.T9.A92H	23	154068054	154162565	9	1.2714	LARGE-GAIN	FOCAL	7	"F8,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3"
TCGA.3L.AA1B	23	154068054	154189464	16	1.1908	LARGE-GAIN	FOCAL	7	"F8,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3"
TCGA.AG.3906.01A	23	154113277	154129581	5	1.017	LARGE-GAIN	FOCAL	7	"F8,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3"
TCGA.AA.3509.01A	23	154132521	154225201	17	2.0545	LARGE-GAIN	FOCAL	1	F8
TCGA.AG.A00C.01A	23	154261627	154319035	13	0.7181	LARGE-GAIN	FOCAL	4	"BRCC3,CMC4,FUNDC2,MTCP1"
TCGA.AG.3906.01A	23	154282821	154306844	8	0.9132	LARGE-GAIN	FOCAL	4	"BRCC3,CMC4,FUNDC2,MTCP1"
TCGA.CK.5914.01A	23	154327528	154444708	5	0.9471	LARGE-GAIN	FOCAL	2	"BRCC3,VBP1"
TCGA.AG.A00C.01A	23	154448408	154528046	11	0.7426	LARGE-GAIN	FOCAL	3	"CLIC2,RAB39B,VBP1"
TCGA.DY.A1DF	23	154735697	154925044	23	0.8633	LARGE-GAIN	FOCAL	2	"SPRY3,TMLHE"
TCGA.AA.A00N.01A	23	154754067	155009837	9	0.9581	LARGE-GAIN	FOCAL	2	"SPRY3,TMLHE"
TCGA.AA.A00D.01A	23	155119100	155149424	5	1.6941	LARGE-GAIN	FOCAL	1	VAMP7
TCGA.AG.3909.01A	23	155227341	155239443	10	0.981	LARGE-GAIN	FOCAL	1	IL9R
TCGA.AA.3862.01A	24	2654981	2845933	14	0.8983	LARGE-GAIN	FOCAL	3	"RPS4Y1,SRY,ZFY"
TCGA.AA.A00D.01A	24	2654981	4900654	18	1.6024	LARGE-GAIN	FOCAL	5	"PCDH11Y,RPS4Y1,SRY,TGIF2LY,ZFY"
TCGA.AA.3861.01A	24	2829066	5605281	15	1.6591	LARGE-GAIN	FOCAL	3	"PCDH11Y,TGIF2LY,ZFY"
TCGA.AA.3862.01A	24	2846813	5369057	8	2.0785	LARGE-GAIN	FOCAL	3	"PCDH11Y,TGIF2LY,ZFY"
TCGA.AG.A00C.01A	24	4900654	4900654	1	1.2372	LARGE-GAIN	FOCAL	1	PCDH11Y
TCGA.AA.A00D.01A	24	4924912	14832473	30	1.0928	LARGE-GAIN	FOCAL	10	"AMELY,PCDH11Y,TBL1Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y"
TCGA.AG.3611.01A	24	6734020	7235319	22	1.4751	LARGE-GAIN	FOCAL	2	"AMELY,TBL1Y"
TCGA.AA.A00D.01A	24	14833984	19990128	90	1.4798	LARGE-GAIN	FOCAL	9	"DDX3Y,NLGN4Y,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.A01K.01A	24	16952303	16952303	1	1.2778	LARGE-GAIN	FOCAL	1	NLGN4Y
TCGA.AA.A00D.01A	24	21749048	21765646	6	2.3391	LARGE-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	24	21867874	21882706	10	1.7134	LARGE-GAIN	FOCAL	1	KDM5D
TCGA.AA.A00D.01A	24	21893637	22942770	21	2.3381	LARGE-GAIN	FOCAL	3	"EIF1AY,KDM5D,RPS4Y2"
TCGA.AA.A01F.01A	24	22737678	22942770	13	1.1611	LARGE-GAIN	FOCAL	2	"EIF1AY,RPS4Y2"
TCGA.AA.A00D.01A	24	26192716	27770581	3	1.142	LARGE-GAIN	FOCAL	8	"BPY2,BPY2B,BPY2C,CDY1,CDY1B,DAZ2,DAZ3,DAZ4"
TCGA.AA.A00Z.01A	1	866346	1153901	13	1.8183	LARGE-GAIN	NONFOCAL	14	"AGRN,C1orf159,HES4,ISG15,KLHL17,NOC2L,PERM1,PLEKHN1,RNF223,SAMD11,SDF4,TNFRSF18,TNFRSF4,TTLL10"
TCGA.AG.3605.01A	1	877739	3414896	38	1.7214	LARGE-GAIN	NONFOCAL	66	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTC34,TTLL10,UBE2J2,VWA1"
TCGA.AA.A00Z.01A	1	1246247	6478886	26	1.8448	LARGE-GAIN	NONFOCAL	67	"ACOT7,ACTRT2,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DVL1,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES5,ICMT,KCNAB2,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NPHP4,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,PUSL1,RER1,RNF207,RPL22,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TP73,TPRG1L,TTC34,VWA1,WRAP73"
TCGA.DM.A28H	1	1462765	4054066	441	0.7112	LARGE-GAIN	NONFOCAL	42	"ACTRT2,ARHGEF16,ATAD3A,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CDK11A,CDK11B,CEP104,CFAP74,DFFB,FAM213B,GABRD,GNB1,HES5,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,NADK,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,RER1,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TMEM240,TMEM52,TNFRSF14,TP73,TPRG1L,TTC34,WRAP73"
TCGA.DM.A28H	1	5475500	9267899	1130	0.8017	LARGE-GAIN	NONFOCAL	34	"ACOT7,CA6,CAMTA1,CHD5,DNAJC11,ENO1,ERRFI1,ESPN,GPR153,GPR157,HES2,HES3,ICMT,KCNAB2,KLHL21,NOL9,NPHP4,PARK7,PER3,PHF13,PLEKHG5,RERE,RNF207,RPL22,SLC2A5,SLC2A7,SLC45A1,TAS1R1,THAP3,TNFRSF25,TNFRSF9,UTS2,VAMP3,ZBTB48"
TCGA.AA.A00N.01A	1	12725941	12943106	27	1.1909	LARGE-GAIN	NONFOCAL	11	"AADACL3,AADACL4,C1orf158,HNRNPCL1,HNRNPCL3,HNRNPCL4,PRAMEF1,PRAMEF11,PRAMEF12,PRAMEF2,PRAMEF4"
TCGA.AA.3861.01A	1	12835634	13802346	32	2.1773	LARGE-GAIN	NONFOCAL	28	"HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9"
TCGA.AA.3862.01A	1	12835634	13802346	33	2.1239	LARGE-GAIN	NONFOCAL	28	"HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9"
TCGA.AZ.4684.01A	1	37267435	43424227	640	1.1513	LARGE-GAIN	NONFOCAL	76	"AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,C1orf50,CAP1,CCDC23,CCDC30,CDCA8,CITED4,CLDN19,COL9A2,CTPS1,DNALI1,EDN2,EPHA10,ERMAP,EXO5,FHL3,FOXJ3,FOXO6,GJA9,GNL2,GRIK3,GUCA2A,GUCA2B,HEYL,HIVEP3,HPCAL4,INPP5B,KCNQ4,KIAA0754,LOC100129924,MACF1,MANEAL,MEAF6,MFSD2A,MTF1,MYCBP,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,P3H1,PABPC4,POU3F1,PPCS,PPIE,PPIH,PPT1,RHBDL2,RIMKLA,RIMS3,RLF,RRAGC,RSPO1,SCMH1,SF3A3,SLC2A1,SLFNL1,SMAP2,SNIP1,TMCO2,TRIT1,UTP11L,YBX1,YRDC,ZC3H12A,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684,ZNF691"
TCGA.D5.6536	1	39217731	40733657	318	1.1319	LARGE-GAIN	NONFOCAL	24	"AKIRIN1,BMP8A,BMP8B,CAP1,GJA9,HEYL,HPCAL4,KIAA0754,MACF1,MFSD2A,MYCBP,MYCL,NDUFS5,NT5C1A,OXCT2,PABPC4,PPIE,PPT1,RHBDL2,RLF,RRAGC,TMCO2,TRIT1,ZMPSTE24"
TCGA.AF.2693	1	40809668	42798203	580	0.7887	LARGE-GAIN	NONFOCAL	18	"CITED4,CTPS1,EDN2,EXO5,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,KCNQ4,NFYC,RIMS3,SCMH1,SLFNL1,SMAP2,ZFP69,ZFP69B,ZNF684"
TCGA.AZ.4684.01A	1	71318456	76007070	127	0.8907	LARGE-GAIN	NONFOCAL	12	"CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LHX8,LRRIQ3,NEGR1,PTGER3,SLC44A5,TNNI3K,TYW3,ZRANB2"
TCGA.AA.A00N.01A	1	101427338	108681643	142	0.7527	LARGE-GAIN	NONFOCAL	16	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,DPH5,LOC101928436,NTNG1,OLFM3,PRMT6,RNPC3,S1PR1,SLC25A24,SLC30A7,VAV3"
TCGA.AG.A02G.01A	1	111854802	112298229	59	1.8778	LARGE-GAIN	NONFOCAL	11	"ADORA3,ATP5F1,C1orf162,CHIA,DDX20,FAM212B,OVGP1,PIFO,RAP1A,TMIGD3,WDR77"
TCGA.AG.A02G.01A	1	113256112	115167760	175	1.6856	LARGE-GAIN	NONFOCAL	17	"AP4B1,BCAS2,BCL2L15,DCLRE1B,DENND2C,FAM19A3,HIPK1,LRIG2,MAGI3,OLFML3,PHTF1,PPM1J,PTPN22,RSBN1,SLC16A1,SYT6,TRIM33"
TCGA.A6.3808.01A	1	117639914	120462812	191	0.85	LARGE-GAIN	NONFOCAL	20	"ADAM30,FAM46C,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,MAN1A2,NBPF7,NOTCH2,PHGDH,REG4,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AA.3861.01A	1	120464867	144825371	44	1.3648	LARGE-GAIN	NONFOCAL	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AA.3862.01A	1	120539628	144618086	17	1.9235	LARGE-GAIN	NONFOCAL	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.DM.A28C	1	144549928	249198691	34148	0.8398	LARGE-GAIN	NONFOCAL	946	Too-Many
TCGA.D5.5539	1	144832254	211464114	20549	0.8031	LARGE-GAIN	NONFOCAL	703	Too-Many
TCGA.CM.5861	1	144832254	249198691	34155	0.7284	LARGE-GAIN	NONFOCAL	946	Too-Many
TCGA.A6.6652	1	144849543	249198691	34197	0.7282	LARGE-GAIN	NONFOCAL	946	Too-Many
TCGA.A6.4107	1	144865626	147807715	417	0.7654	LARGE-GAIN	NONFOCAL	33	"ACP6,ANKRD34A,ANKRD35,BCL9,CD160,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PRKAB2,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AA.3675	1	144865626	249198691	34207	0.735	LARGE-GAIN	NONFOCAL	946	Too-Many
TCGA.AZ.6606	1	145382123	204359385	17872	0.7002	LARGE-GAIN	NONFOCAL	632	Too-Many
TCGA.AA.A01X	1	145382123	249198691	34119	0.6867	LARGE-GAIN	NONFOCAL	943	Too-Many
TCGA.AA.3861.01A	1	147416059	149877381	24	1.5714	LARGE-GAIN	NONFOCAL	25	"BOLA1,FCGR1A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SV2A"
TCGA.AA.3862.01A	1	147416059	149877381	24	2.1296	LARGE-GAIN	NONFOCAL	25	"BOLA1,FCGR1A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SV2A"
TCGA.F5.6464	1	149254919	154105693	1041	0.7353	LARGE-GAIN	NONFOCAL	154	Too-Many
TCGA.AG.A00Y.01A	1	150931606	151280028	138	1.045	LARGE-GAIN	NONFOCAL	21	"ANXA9,BNIPL,C1orf56,CDC42SE1,CERS2,FAM63A,GABPB2,LYSMD1,MLLT11,PI4KB,PIP5K1A,PRUNE,PSMD4,SCNM1,SEMA6C,SETDB1,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS72,ZNF687"
TCGA.AA.A00N.01A	1	152275158	153333082	84	1.3414	LARGE-GAIN	NONFOCAL	42	"C1orf68,CRCT1,CRNN,FLG,FLG2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,S100A9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.A010.01A	1	152484019	152799967	21	1.1094	LARGE-GAIN	NONFOCAL	20	"C1orf68,CRCT1,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A"
TCGA.CK.5914.01A	1	152883017	153122327	12	0.948	LARGE-GAIN	NONFOCAL	11	"IVL,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.3909.01A	1	152883017	153190629	14	0.7577	LARGE-GAIN	NONFOCAL	13	"IVL,LELP1,PRR9,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.A6.3808.01A	1	153012552	153318524	24	1.3506	LARGE-GAIN	NONFOCAL	11	"LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G"
TCGA.AA.3509.01A	1	158326541	159033264	92	0.918	LARGE-GAIN	NONFOCAL	19	"AIM2,CD1E,IFI16,MNDA,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SPTA1"
TCGA.AA.A00N.01A	1	158607783	159169489	77	0.8015	LARGE-GAIN	NONFOCAL	11	"AIM2,CADM3,IFI16,MNDA,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,PYHIN1,SPTA1"
TCGA.DY.A1H8	1	168673203	181745579	4253	0.9373	LARGE-GAIN	NONFOCAL	79	"ABL2,ACBD6,ANGPTL1,ANKRD45,ASTN1,ATP1B1,AXDND1,BLZF1,BRINP2,C1orf105,C1orf112,CACNA1E,CACYBP,CCDC181,CENPL,CEP350,DARS2,DNM3,DPT,F5,FAM163A,FAM20B,FASLG,FMO1,FMO2,FMO3,FMO4,GORAB,GPR52,IER5,KIAA0040,KIAA1614,KIFAP3,KLHL20,LHX4,LOC730159,METTL11B,METTL13,METTL18,MR1,MROH9,MRPS14,MYOC,NME7,NPHS2,PAPPA2,PIGC,PRDX6,PRRC2C,PRRX1,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,SCYL3,SEC16B,SELE,SELL,SELP,SERPINC1,SLC19A2,SLC9C2,SOAT1,STX6,SUCO,TDRD5,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,VAMP4,XPR1,ZBTB37"
TCGA.AA.3509.01A	1	170004553	172502280	167	0.6791	LARGE-GAIN	NONFOCAL	17	"C1orf105,DNM3,FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,METTL13,MROH9,MYOC,PIGC,PRRC2C,PRRX1,SUCO,VAMP4"
TCGA.DY.A1H8	1	181824816	182994114	397	0.9732	LARGE-GAIN	NONFOCAL	11	"DHX9,GLUL,LAMC1,NPL,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,TEDDM1,ZNF648"
TCGA.DY.A1H8	1	183056371	184393090	494	1.324	LARGE-GAIN	NONFOCAL	11	"APOBEC4,ARPC5,C1orf21,COLGALT2,LAMC1,LAMC2,NCF2,NMNAT2,RGL1,SMG7,TSEN15"
TCGA.DY.A1H8	1	184393317	188583915	1258	1.625	LARGE-GAIN	NONFOCAL	15	"C1orf21,C1orf27,EDEM3,FAM129A,HMCN1,IVNS1ABP,OCLM,PDC,PLA2G4A,PRG4,PTGS2,RNF2,SWT1,TPR,TRMT1L"
TCGA.DY.A1H8	1	188764542	194516652	1586	1.734	LARGE-GAIN	NONFOCAL	11	"B3GALT2,BRINP3,CDC73,GLRX2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.AA.3509.01A	1	193218813	198827964	214	1.3555	LARGE-GAIN	NONFOCAL	18	"ASPM,ATP6V1G3,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,KCNT2,LHX9,NEK7,PTPRC,ZBTB41"
TCGA.AZ.4684.01A	1	193218813	198827964	214	1.0789	LARGE-GAIN	NONFOCAL	18	"ASPM,ATP6V1G3,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,KCNT2,LHX9,NEK7,PTPRC,ZBTB41"
TCGA.DY.A1H8	1	202859599	209426303	2379	1.5169	LARGE-GAIN	NONFOCAL	80	"ADIPOR1,ADORA1,ATP2B4,AVPR1B,BTG2,C1orf116,C1orf186,C4BPA,C4BPB,CD34,CD46,CD55,CDK18,CHI3L1,CHIT1,CNTN2,CR1,CR1L,CR2,CTSE,CYB5R1,DSTYK,DYRK3,EIF2D,ELK4,ETNK2,FAM72A,FAM72C,FCAMR,FCMR,FMOD,GOLT1A,IKBKE,IL10,IL19,IL20,IL24,KISS1,KLHDC8A,KLHL12,LAX1,LEMD1,LRRN2,MAPKAPK2,MDM4,MFSD4,MYBPH,MYOG,NFASC,NUAK2,NUCKS1,OPTC,PFKFB2,PIGR,PIK3C2B,PLEKHA6,PLXNA2,PM20D1,PPFIA4,PPP1R15B,PRELP,RAB29,RASSF5,RBBP5,REN,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SRGAP2,SRGAP2B,SRGAP2C,TMCC2,TMEM183A,TMEM183B,TMEM81,YOD1,ZBED6,ZC3H11A"
TCGA.D5.5539	1	211834027	249198691	13466	0.7941	LARGE-GAIN	NONFOCAL	240	Too-Many
TCGA.AA.A00N.01A	1	247582055	248813185	70	0.8037	LARGE-GAIN	NONFOCAL	41	"GCSAML,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,TRIM58"
TCGA.AA.3861.01A	1	247726839	248844703	54	1.2424	LARGE-GAIN	NONFOCAL	39	"GCSAML,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR6F1,TRIM58"
TCGA.AA.3862.01A	1	247726839	248844703	54	1.3848	LARGE-GAIN	NONFOCAL	39	"GCSAML,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR6F1,TRIM58"
TCGA.CK.5914.01A	1	248366338	248737464	20	0.7798	LARGE-GAIN	NONFOCAL	15	"OR14C36,OR2G6,OR2M3,OR2M4,OR2M7,OR2T1,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T4,OR2T5,OR2T6"
TCGA.A6.3808.01A	2	113518239	114035859	73	0.7029	LARGE-GAIN	NONFOCAL	12	"CKAP2L,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,PAX8,PSD4"
TCGA.A6.2678	2	130674318	132917160	261	0.9103	LARGE-GAIN	NONFOCAL	25	"AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CFC1,CFC1B,FAM168B,GPR148,IMP4,MZT2A,MZT2B,PLEKHB2,POTEE,POTEF,POTEI,POTEJ,PTPN18,RAB6C,SMPD4,TUBA3D,TUBA3E,WTH3DI"
TCGA.AA.3861.01A	2	131258088	132919145	64	1.0213	LARGE-GAIN	NONFOCAL	16	"AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC74A,CFC1,CFC1B,FAM168B,GPR148,MZT2A,PLEKHB2,POTEE,POTEI,POTEJ,TUBA3D,WTH3DI"
TCGA.AA.3862.01A	2	131415035	132558386	54	0.9556	LARGE-GAIN	NONFOCAL	13	"AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC74A,FAM168B,GPR148,MZT2A,PLEKHB2,POTEE,POTEJ,TUBA3D,WTH3DI"
TCGA.A6.3808.01A	2	136700880	149220114	208	0.7898	LARGE-GAIN	NONFOCAL	14	"ACVR2A,ARHGAP15,CXCR4,DARS,GTDC1,HNMT,KYNU,LRP1B,MBD5,NXPH2,ORC4,SPOPL,THSD7B,ZEB2"
TCGA.AA.3509.01A	2	138758460	149520192	184	0.7586	LARGE-GAIN	NONFOCAL	12	"ACVR2A,ARHGAP15,EPC2,GTDC1,HNMT,KYNU,LRP1B,MBD5,NXPH2,ORC4,SPOPL,ZEB2"
TCGA.AZ.4684.01A	2	138758460	149520192	184	0.8141	LARGE-GAIN	NONFOCAL	12	"ACVR2A,ARHGAP15,EPC2,GTDC1,HNMT,KYNU,LRP1B,MBD5,NXPH2,ORC4,SPOPL,ZEB2"
TCGA.AA.3509.01A	2	162036087	168067197	356	0.8116	LARGE-GAIN	NONFOCAL	23	"COBLL1,CSRNP3,DPP4,FAP,FIGN,GALNT3,GCA,GCG,GRB14,IFIH1,KCNH7,PSMD14,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,TANK,TBR1,TTC21B,XIRP2"
TCGA.AZ.4684.01A	2	162059948	168821103	368	0.8613	LARGE-GAIN	NONFOCAL	25	"B3GALT1,COBLL1,CSRNP3,DPP4,FAP,FIGN,GALNT3,GCA,GCG,GRB14,IFIH1,KCNH7,PSMD14,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,STK39,TANK,TBR1,TTC21B,XIRP2"
TCGA.AA.A02E.01A	2	225653734	231683181	377	0.7352	LARGE-GAIN	NONFOCAL	24	"AGFG1,C2orf83,CAB39,CCL20,COL4A3,COL4A4,DAW1,DNER,DOCK10,FBXO36,IRS1,MFF,NYAP2,PID1,RHBDD1,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPHKAP,TM4SF20,TRIP12"
TCGA.EI.6510	3	10032258	20628156	3483	0.7668	LARGE-GAIN	NONFOCAL	66	"ANKRD28,ATG7,ATP2B2,BRK1,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,DAZL,DPH3,EAF1,EFHB,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IQSEC1,IRAK2,KAT2B,KCNH8,LOC339862,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,OXNAD1,PLCL2,PP2D1,PPARG,RAB5A,RAF1,RBSN,RFTN1,RPL32,SATB1,SEC13,SGOL1,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SYN2,TAMM41,TATDN2,TBC1D5,TIMP4,TMEM40,TMEM43,TSEN2,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.3972	3	12000681	12939828	304	1.5356	LARGE-GAIN	NONFOCAL	11	"CAND2,IQSEC1,MKRN2,MKRN2OS,PPARG,RAF1,RPL32,SYN2,TIMP4,TMEM40,TSEN2"
TCGA.AA.3972	3	14662336	17135596	859	0.8985	LARGE-GAIN	NONFOCAL	20	"ANKRD28,BTD,C3orf20,CAPN7,CCDC174,COLQ,DAZL,DPH3,EAF1,FGD5,GALNT15,HACL1,METTL6,MRPS25,NR2C2,OXNAD1,PLCL2,RBSN,RFTN1,SH3BP5"
TCGA.EI.6510	3	20651458	49393266	9050	0.7828	LARGE-GAIN	NONFOCAL	203	Too-Many
TCGA.AA.A00Z.01A	3	48587249	52453828	68	0.8436	LARGE-GAIN	NONFOCAL	103	Too-Many
TCGA.AG.3605.01A	3	50312684	52832935	38	1.3336	LARGE-GAIN	NONFOCAL	62	"ABHD14A,ABHD14B,ACY1,ALAS1,BAP1,C3orf18,CACNA2D2,CISH,CYB561D2,DNAH1,DOCK3,DUSP7,GLT8D1,GLYCTK,GNL3,GPR62,GRM2,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,ITIH1,ITIH3,LSMEM2,MANF,MAPKAPK3,NAT6,NEK4,NISCH,NPRL2,NT5DC2,PARP3,PBRM1,PCBP4,PHF7,POC1A,PPM1M,RAD54L2,RASSF1,RBM15B,RPL29,RRP9,SEMA3B,SEMA3G,SMIM4,SPCS1,STAB1,TEX264,TLR9,TMEM115,TNNC1,TUSC2,TWF2,VPRBP,WDR82,ZMYND10"
TCGA.AA.A00Z.01A	3	52512113	52832935	15	2.1522	LARGE-GAIN	NONFOCAL	11	"GLT8D1,GNL3,ITIH1,ITIH3,NEK4,NISCH,NT5DC2,PBRM1,SMIM4,SPCS1,STAB1"
TCGA.AA.A00N.01A	3	102153879	108812233	214	0.7701	LARGE-GAIN	NONFOCAL	15	"ALCAM,BBX,CBLB,CCDC54,CD47,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1,ZPLD1"
TCGA.DY.A1DC	3	107900423	110256428	631	0.6869	LARGE-GAIN	NONFOCAL	11	"DPPA2,DPPA4,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AA.A00N.01A	3	113696986	119165838	92	0.7016	LARGE-GAIN	NONFOCAL	14	"ARHGAP31,B4GALT4,C3orf30,DRD3,GAP43,IGSF11,KIAA1407,LSAMP,QTRTD1,TIGIT,TMEM39A,UPK1B,ZBTB20,ZNF80"
TCGA.DY.A1DC	3	162914348	174823832	3161	0.6831	LARGE-GAIN	NONFOCAL	37	"ACTRT3,BCHE,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NAALADL2,NCEH1,NLGN1,PDCD10,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SPATA16,TMEM212,TNFSF10,TNIK,WDR49,ZBBX"
TCGA.AZ.4684.01A	3	164709902	169514486	140	0.8254	LARGE-GAIN	NONFOCAL	13	"ACTRT3,BCHE,GOLIM4,LRRC34,MECOM,MYNN,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.3509.01A	3	164724572	169498327	128	0.6785	LARGE-GAIN	NONFOCAL	12	"ACTRT3,BCHE,GOLIM4,MECOM,MYNN,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.A01Q.01A	3	184428634	186501313	165	0.6863	LARGE-GAIN	NONFOCAL	19	"AHSG,C3orf70,CRYGS,DGKG,DNAJB11,EHHADH,ETV5,FETUB,HRG,IGF2BP2,KNG1,LIPH,MAGEF1,MAP3K13,SENP2,TBCCD1,TMEM41A,TRA2B,VPS8"
TCGA.AG.3605.01A	4	155092	1379604	20	1.1526	LARGE-GAIN	NONFOCAL	22	"ATP5I,CPLX1,CTBP1,DGKQ,FGFRL1,GAK,IDUA,MAEA,MFSD7,MYL5,PCGF3,PDE6B,PIGG,RNF212,SLC26A1,SPON2,TMEM175,UVSSA,ZNF141,ZNF718,ZNF721,ZNF732"
TCGA.AA.A00Z.01A	4	648558	2899860	18	2.0479	LARGE-GAIN	NONFOCAL	39	"ADD1,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,HAUS3,IDUA,LETM1,MAEA,MFSD7,MXD4,MYL5,NAT8L,NELFA,NKX1-1,PCGF3,PDE6B,POLN,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZFYVE28"
TCGA.AM.5820	4	1158990	1824363	106	0.6793	LARGE-GAIN	NONFOCAL	12	"CRIPAK,CTBP1,FAM53A,FGFR3,LETM1,MAEA,NKX1-1,SLBP,SPON2,TACC3,TMEM129,UVSSA"
TCGA.A6.A56B	4	48936820	56903250	1250	0.7496	LARGE-GAIN	NONFOCAL	23	"CEP135,CHIC2,CLOCK,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,GSX2,KDR,KIT,LNX1,LRRC66,NMU,PDCL2,PDGFRA,RASL11B,SCFD2,SGCB,SPATA18,SRD5A3,TMEM165,USP46"
TCGA.RU.A8FL	4	52696791	59889960	2237	1.0579	LARGE-GAIN	NONFOCAL	35	"AASDH,ARL9,CEP135,CHIC2,CLOCK,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NMU,NOA1,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SPATA18,SPINK2,SRD5A3,SRP72,THEGL,TMEM165,USP46"
TCGA.AA.3509.01A	4	62452903	71264947	292	0.7685	LARGE-GAIN	NONFOCAL	38	"ADGRL3,CABS1,CENPC,CSN1S1,CSN2,CSN3,EPHA5,FDCSP,GNRHR,HTN1,HTN3,ODAM,PROL1,PRR27,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,YTHDC1"
TCGA.AA.3861.01A	4	69332302	70455108	61	1.1613	LARGE-GAIN	NONFOCAL	11	"TMPRSS11E,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7"
TCGA.RU.A8FL	4	70556706	71372245	254	0.9257	LARGE-GAIN	NONFOCAL	16	"CABS1,CSN1S1,CSN2,CSN3,FDCSP,HTN1,HTN3,MUC7,ODAM,PROL1,PRR27,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1"
TCGA.AA.A00N.01A	4	70921154	71672196	79	0.7095	LARGE-GAIN	NONFOCAL	16	"AMBN,AMTN,CABS1,CSN3,ENAM,FDCSP,HTN1,JCHAIN,MUC7,ODAM,PROL1,PRR27,RUFY3,SMR3A,SMR3B,UTP3"
TCGA.RU.A8FL	4	74279548	76487351	664	1.2275	LARGE-GAIN	NONFOCAL	22	"AFM,AFP,ALB,AREG,BTC,C4orf26,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,EPGN,EREG,MTHFD2L,PARM1,PF4,PF4V1,PPBP,RASSF6,RCHY1,THAP6"
TCGA.AA.A010.01A	4	75177855	76691938	59	0.7043	LARGE-GAIN	NONFOCAL	11	"AREG,BTC,C4orf26,CDKL2,EPGN,EREG,G3BP2,PARM1,RCHY1,THAP6,USO1"
TCGA.RU.A8FL	4	76487437	77219401	240	0.7168	LARGE-GAIN	NONFOCAL	15	"ART3,C4orf26,CDKL2,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,G3BP2,NAAA,NUP54,PPEF2,SCARB2,SDAD1,USO1"
TCGA.AZ.4614	4	167457499	177138415	2630	0.7738	LARGE-GAIN	NONFOCAL	27	"AADAT,ADAM29,ANXA10,ASB5,C4orf27,CBR4,CEP44,CLCN3,DDX60,DDX60L,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,MFAP3L,NEK1,PALLD,SAP30,SCRG1,SH3RF1,SPATA4,SPOCK3,WDR17"
TCGA.AA.A01R	4	168522555	171351826	888	1.1021	LARGE-GAIN	NONFOCAL	11	"AADAT,ANXA10,C4orf27,CBR4,CLCN3,DDX60,DDX60L,MFAP3L,NEK1,PALLD,SH3RF1"
TCGA.AA.3844	5	51454	2031137	486	0.7187	LARGE-GAIN	NONFOCAL	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.D5.6531	5	51454	46328444	15288	0.6808	LARGE-GAIN	NONFOCAL	136	Too-Many
TCGA.AZ.6608	5	51454	51898044	15724	0.9274	LARGE-GAIN	NONFOCAL	139	Too-Many
TCGA.AG.A02X.01A	5	143111	6668297	240	0.9237	LARGE-GAIN	NONFOCAL	33	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,NSUN2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.A02W.01A	5	143111	14496936	497	0.7322	LARGE-GAIN	NONFOCAL	50	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AG.3605.01A	5	224425	1523794	7	0.9402	LARGE-GAIN	NONFOCAL	18	"AHRR,BRD9,CEP72,CLPTM1L,EXOC3,LPCAT1,NKD2,PDCD6,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AM.5820	5	472054	1325802	125	0.6919	LARGE-GAIN	NONFOCAL	12	"BRD9,CEP72,CLPTM1L,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.A00Z.01A	5	475629	10288497	13	0.8229	LARGE-GAIN	NONFOCAL	36	"ADAMTS16,ADCY2,BRD9,C5orf38,C5orf49,CCT5,CEP72,CLPTM1L,CMBL,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AG.A02X.01A	5	6737605	45695720	1287	1.2646	LARGE-GAIN	NONFOCAL	103	Too-Many
TCGA.AA.A02W.01A	5	14498579	45645277	1001	0.8048	LARGE-GAIN	NONFOCAL	87	"ADAMTS12,AGXT2,AMACR,ANKH,ANXA2R,BASP1,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH10,CDH12,CDH18,CDH6,CDH9,DAB2,DNAJC21,DROSHA,EGFLAM,FAM105A,FAM134B,FBXL7,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HCN1,HMGCS1,IL7R,LIFR,LMBRD2,MARCH11,MROH2B,MRPS30,MTMR12,MYO10,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OTULIN,OXCT1,PAIP1,PDZD2,PLCXD3,PRDM9,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TRIO,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131,ZNF622"
TCGA.F5.6811.01A	5	26938305	43740096	903	0.714	LARGE-GAIN	NONFOCAL	70	"ADAMTS12,AGXT2,AMACR,ANXA2R,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH6,CDH9,DAB2,DNAJC21,DROSHA,EGFLAM,FBXO4,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,MTMR12,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PDZD2,PLCXD3,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131"
TCGA.AA.3854	5	33435321	37590847	1340	1.9174	LARGE-GAIN	NONFOCAL	27	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf42,CAPSL,DNAJC21,IL7R,LMBRD2,NADK2,NIPBL,NUP155,PRLR,RAD1,RAI14,RANBP3L,RXFP3,SKP2,SLC1A3,SLC45A2,SPEF2,TARS,TTC23L,UGT3A1,UGT3A2,WDR70"
TCGA.AG.3731	5	37423117	46383334	2197	0.7494	LARGE-GAIN	NONFOCAL	37	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,EGFLAM,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,HCN1,HMGCS1,LIFR,MROH2B,MRPS30,NIM1K,NNT,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,SEPP1,TTC33,WDR70,ZNF131"
TCGA.AA.3854	5	38807122	44904029	1555	1.2786	LARGE-GAIN	NONFOCAL	31	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,FBXO4,FGF10,FYB,GHR,HMGCS1,MROH2B,MRPS30,NIM1K,NNT,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,SEPP1,TTC33,ZNF131"
TCGA.AZ.6608	5	53833107	55627678	561	0.9437	LARGE-GAIN	NONFOCAL	16	"ANKRD55,CCNO,CDC20B,DDX4,DHX29,ESM1,GPX8,GZMA,GZMK,IL31RA,IL6ST,MCIDAS,PPAP2A,SKIV2L2,SLC38A9,SNX18"
TCGA.AA.3861.01A	5	68669685	70888700	85	1.1368	LARGE-GAIN	NONFOCAL	13	"BDP1,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MCCC2,NAIP,OCLN,RAD17,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AA.3862.01A	5	68669685	70888700	86	1.5316	LARGE-GAIN	NONFOCAL	13	"BDP1,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MCCC2,NAIP,OCLN,RAD17,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AG.A01W.01A	5	140216157	140328070	18	0.7331	LARGE-GAIN	NONFOCAL	14	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1"
TCGA.AA.A00N.01A	5	140389183	140431004	3	0.8989	LARGE-GAIN	NONFOCAL	16	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1"
TCGA.AA.A02K.01A	5	140724324	140783653	34	0.8081	LARGE-GAIN	NONFOCAL	14	"PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5"
TCGA.AG.A014.01A	5	140800899	140801323	2	2.8911	LARGE-GAIN	NONFOCAL	18	"PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7"
TCGA.AG.A01W.01A	5	140845899	140854487	5	0.6933	LARGE-GAIN	NONFOCAL	19	"PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7"
TCGA.AA.A00N.01A	5	145862138	147929692	165	0.7323	LARGE-GAIN	NONFOCAL	17	"C5orf46,DPYSL3,FBXO38,GPR151,HTR4,JAKMIP2,PPP2R2B,SCGB3A2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1"
TCGA.AA.3844	5	149430914	150155711	234	0.731	LARGE-GAIN	NONFOCAL	15	"ARSI,CAMK2A,CD74,CDX1,CSF1R,DCTN4,HMGXB3,MYOZ3,NDST1,PDGFRB,RBM22,RPS14,SLC6A7,SYNPO,TCOF1"
TCGA.AA.A00N.01A	5	159656491	161580072	91	0.8719	LARGE-GAIN	NONFOCAL	11	"ATP10B,C1QTNF2,CCNJL,FABP6,GABRA1,GABRA6,GABRB2,GABRG2,PTTG1,SLU7,ZBED8"
TCGA.A6.A56B	6	203844	28354532	11427	0.9019	LARGE-GAIN	NONFOCAL	196	Too-Many
TCGA.DM.A28K	6	375758	62236966	20997	0.8276	LARGE-GAIN	NONFOCAL	590	Too-Many
TCGA.AA.A01R	6	18186546	28772492	3704	0.8452	LARGE-GAIN	NONFOCAL	116	Too-Many
TCGA.AA.A00N.01A	6	25689386	26501778	128	0.914	LARGE-GAIN	NONFOCAL	47	"BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AA,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BA,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TRIM38"
TCGA.AA.A010.01A	6	26017275	26373501	45	1.1988	LARGE-GAIN	NONFOCAL	34	"BTN3A2,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H"
TCGA.AA.A01Q.01A	6	27791855	28053249	15	0.7756	LARGE-GAIN	NONFOCAL	14	"HIST1H1B,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BN,HIST1H2BO,HIST1H3I,HIST1H3J,HIST1H4J,HIST1H4K,HIST1H4L,OR2B2,OR2B6,ZNF165"
TCGA.AA.A010.01A	6	27806763	28117210	18	0.9806	LARGE-GAIN	NONFOCAL	13	"HIST1H1B,HIST1H2AL,HIST1H2AM,HIST1H2BN,HIST1H2BO,HIST1H3I,HIST1H3J,HIST1H4L,OR2B2,OR2B6,ZKSCAN8,ZNF165,ZSCAN16"
TCGA.AA.A010.01A	6	30954562	31382761	47	0.7992	LARGE-GAIN	NONFOCAL	12	"C6orf15,CCHCR1,CDSN,HLA-B,HLA-C,MICA,MUC21,MUC22,POU5F1,PSORS1C1,PSORS1C2,TCF19"
TCGA.AA.3982	6	31556580	31837249	57	0.7636	LARGE-GAIN	NONFOCAL	29	"ABHD16A,AIF1,APOM,BAG6,C6orf25,C6orf47,C6orf48,CLIC1,CSNK2B,DDAH2,GPANK1,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,NCR3,NEU1,PRRC2A,SAPCD1,SLC44A4,VARS,VWA7"
TCGA.AA.A010.01A	6	36193014	36767695	79	0.7127	LARGE-GAIN	NONFOCAL	11	"BRPF3,C6orf222,CDKN1A,CPNE5,ETV7,KCTD20,PNPLA1,PXT1,RAB44,SRSF3,STK38"
TCGA.AA.3561	6	36754896	38831941	743	1.6001	LARGE-GAIN	NONFOCAL	17	"BTBD9,C6orf89,CCDC167,CMTR1,CPNE5,DNAH8,FGD2,GLO1,MDGA1,MTCH1,PI16,PIM1,PPIL1,RNF8,TBC1D22B,TMEM217,ZFAND3"
TCGA.EI.6511	6	36975032	40364324	1321	0.8019	LARGE-GAIN	NONFOCAL	21	"BTBD9,CCDC167,CMTR1,DAAM2,DNAH8,FGD2,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,LRFN2,MDGA1,MOCS1,PIM1,RNF8,SAYSD1,TBC1D22B,TMEM217,ZFAND3"
TCGA.DY.A1DG	6	37579329	39649566	781	0.6925	LARGE-GAIN	NONFOCAL	11	"BTBD9,DNAH8,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,MDGA1,SAYSD1,ZFAND3"
TCGA.AA.A004.01A	6	39580915	46518041	661	1.8091	LARGE-GAIN	NONFOCAL	90	"AARS2,ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CLIC5,CNPY3,CRIP3,CUL7,CUL9,CYP39A1,DAAM2,DLK2,DNPH1,ENPP4,ENPP5,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KIF6,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MOCS1,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RCAN2,RPL7L1,RRP36,RSPH9,RUNX2,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A00O.01A	6	39682419	41744617	117	1.1602	LARGE-GAIN	NONFOCAL	20	"APOBEC2,DAAM2,FOXP4,FRS3,KIF6,LRFN2,MDFI,MOCS1,NCR2,NFYA,OARD1,PGC,TFEB,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,UNC5CL"
TCGA.DM.A1D7	6	40095311	42232073	860	1.3411	LARGE-GAIN	NONFOCAL	29	"APOBEC2,BYSL,C6orf132,CCND3,FOXP4,FRS3,GUCA1A,GUCA1B,LRFN2,MDFI,MED20,MRPS10,NCR2,NFYA,OARD1,PGC,PRICKLE4,TAF8,TFEB,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,UNC5CL,USP49"
TCGA.DC.4745	6	40232470	42618489	907	0.8151	LARGE-GAIN	NONFOCAL	30	"APOBEC2,BYSL,C6orf132,CCND3,FOXP4,FRS3,GUCA1A,GUCA1B,LRFN2,MDFI,MED20,MRPS10,NCR2,NFYA,OARD1,PGC,PRICKLE4,TAF8,TFEB,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,UBR2,UNC5CL,USP49"
TCGA.EI.6511	6	40369292	45919559	1714	0.8306	LARGE-GAIN	NONFOCAL	83	"AARS2,ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CLIC5,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,RUNX2,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.3561	6	41002194	49631093	2529	1.1493	LARGE-GAIN	NONFOCAL	104	Too-Many
TCGA.AG.4021	6	41744947	42613843	219	1.9602	LARGE-GAIN	NONFOCAL	14	"BYSL,C6orf132,CCND3,FRS3,GUCA1A,GUCA1B,MED20,MRPS10,PRICKLE4,TAF8,TOMM6,TRERF1,UBR2,USP49"
TCGA.AA.A00O.01A	6	41751180	42647410	98	1.8191	LARGE-GAIN	NONFOCAL	13	"BYSL,C6orf132,CCND3,GUCA1A,GUCA1B,MED20,MRPS10,PRICKLE4,TAF8,TOMM6,TRERF1,UBR2,USP49"
TCGA.AA.3666	6	41751712	44833912	824	0.8936	LARGE-GAIN	NONFOCAL	64	"AARS2,ABCC10,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TAF8,TBCC,TCTE1,TJAP1,TMEM151B,TMEM63B,TOMM6,TRERF1,TTBK1,UBR2,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.DM.A1D7	6	42235418	44348256	504	1.0334	LARGE-GAIN	NONFOCAL	51	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TBCC,TCTE1,TJAP1,TMEM151B,TMEM63B,TRERF1,TTBK1,UBR2,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AG.4021	6	42618489	53457719	3227	1.3662	LARGE-GAIN	NONFOCAL	105	Too-Many
TCGA.DC.4745	6	42634725	45012810	647	1.2393	LARGE-GAIN	NONFOCAL	52	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TBCC,TCTE1,TJAP1,TMEM151B,TMEM63B,TTBK1,UBR2,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A00O.01A	6	42935980	43494362	202	1.1535	LARGE-GAIN	NONFOCAL	23	"ABCC10,CRIP3,CUL7,CUL9,DLK2,DNPH1,KLC4,KLHDC3,LRRC73,MEA1,MRPL2,PEX6,POLR1C,PPP2R5D,PTK7,RRP36,SLC22A7,SRF,TJAP1,TTBK1,XPO5,YIPF3,ZNF318"
TCGA.AA.A00O.01A	6	43498385	46293076	203	0.9748	LARGE-GAIN	NONFOCAL	26	"AARS2,C6orf223,CAPN11,CDC5L,CLIC5,ENPP4,ENPP5,GTPBP2,HSP90AB1,MAD2L1BP,MRPL14,MRPS18A,NFKBIE,POLH,RCAN2,RSPH9,RUNX2,SLC29A1,SLC35B2,SPATS1,SUPT3H,TCTE1,TMEM151B,TMEM63B,VEGFA,XPO5"
TCGA.CK.5914.01A	6	46677039	49423746	123	0.7377	LARGE-GAIN	NONFOCAL	12	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,CD2AP,MEP1A,MUT,OPN5,PLA2G7,PTCHD4,TNFRSF21"
TCGA.EI.6511	6	49155042	52355205	934	1.1319	LARGE-GAIN	NONFOCAL	22	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,EFHC1,GLYATL3,IL17A,IL17F,MCM3,MUT,PAQR8,PGK2,PKHD1,RHAG,TFAP2B,TFAP2D"
TCGA.AA.3561	6	49636026	57215493	2341	0.6834	LARGE-GAIN	NONFOCAL	46	"BAG2,BEND6,BMP5,COL21A1,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MLIP,PAQR8,PGK2,PKHD1,PRIM2,RAB23,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.AA.A02H.01A	6	56993485	73905073	283	0.7213	LARGE-GAIN	NONFOCAL	22	"ADGRB3,B3GAT2,BAG2,COL19A1,COL9A1,EYS,FAM135A,KCNQ5,KHDRBS2,LGSN,LMBRD1,LOC441155,MTRNR2L9,OGFRL1,PHF3,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,ZNF451"
TCGA.A6.3808.01A	6	76602237	82909811	127	0.8058	LARGE-GAIN	NONFOCAL	15	"BCKDHB,C6orf7,ELOVL4,FAM46A,HMGN3,HTR1B,IBTK,IMPG1,IRAK1BP1,LCA5,MEI4,MYO6,PHIP,SH3BGRL2,TTK"
TCGA.DM.A28K	6	78041545	84234143	1827	0.8393	LARGE-GAIN	NONFOCAL	20	"BCKDHB,C6orf7,DOPEY1,ELOVL4,FAM46A,HMGN3,HTR1B,IBTK,IRAK1BP1,LCA5,ME1,MEI4,PGM3,PHIP,PRSS35,RWDD2A,SH3BGRL2,TPBG,TTK,UBE3D"
TCGA.AA.3509.01A	6	90659937	97694439	95	0.7691	LARGE-GAIN	NONFOCAL	11	"BACH2,EPHA7,FHL5,FUT9,GPR63,KLHL32,MANEA,MAP3K7,MMS22L,NDUFAF4,UFL1"
TCGA.AZ.4684.01A	6	90659937	97694439	95	0.9436	LARGE-GAIN	NONFOCAL	11	"BACH2,EPHA7,FHL5,FUT9,GPR63,KLHL32,MANEA,MAP3K7,MMS22L,NDUFAF4,UFL1"
TCGA.AG.3728	6	105583386	107623874	733	0.7061	LARGE-GAIN	NONFOCAL	11	"AIM1,ATG5,BEND3,BVES,C6orf203,PDSS2,POPDC3,PRDM1,PREP,QRSL1,RTN4IP1"
TCGA.DM.A288	6	121785690	170918030	16846	0.7379	LARGE-GAIN	NONFOCAL	218	Too-Many
TCGA.DM.A28K	6	129167448	141987583	4112	0.8327	LARGE-GAIN	NONFOCAL	63	"ABRACL,AHI1,AKAP7,ALDH8A1,ARFGEF3,ARG1,ARHGAP18,BCLAF1,CCDC28A,CITED2,CTAGE9,CTGF,ECT2L,ENPP1,ENPP3,EPB41L2,EYA4,HBS1L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,L3MBTL3,LAMA2,LOC100507462,MAP3K5,MAP7,MED23,MOXD1,MTFR2,MYB,NHSL1,OLIG3,OR2A4,PBOV1,PDE7B,PERP,PEX7,REPS1,RPS12,SAMD3,SGK1,SLC18B1,SLC2A12,SLC35D3,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TMEM200A,TMEM244,TNFAIP3,TXLNB,VNN1,VNN2,VNN3"
TCGA.DM.A28F	7	44407	1988702	277	0.7685	LARGE-GAIN	NONFOCAL	22	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3844	7	44407	3338688	737	0.7	LARGE-GAIN	NONFOCAL	35	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.EI.6513	7	44407	6764582	1718	0.7351	LARGE-GAIN	NONFOCAL	70	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3679	7	44407	10117004	3230	0.7047	LARGE-GAIN	NONFOCAL	79	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.G4.6294	7	44407	13860149	4798	0.8072	LARGE-GAIN	NONFOCAL	86	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3841	7	44407	14726758	5140	0.7433	LARGE-GAIN	NONFOCAL	88	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DGKB,DNAAF5,EIF2AK1,EIF3B,ELFN1,ETV1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AG.3592	7	44407	38290713	14383	0.943	LARGE-GAIN	NONFOCAL	202	Too-Many
TCGA.CA.5797	7	44407	44978150	16420	0.6906	LARGE-GAIN	NONFOCAL	243	Too-Many
TCGA.EI.6514	7	44407	54678343	19981	0.7099	LARGE-GAIN	NONFOCAL	270	Too-Many
TCGA.A6.A56B	7	44407	56700302	20415	0.7663	LARGE-GAIN	NONFOCAL	284	Too-Many
TCGA.DC.4745	7	44407	61987337	20710	0.9248	LARGE-GAIN	NONFOCAL	286	Too-Many
TCGA.AF.3911	7	44407	63110342	20765	0.7599	LARGE-GAIN	NONFOCAL	286	Too-Many
TCGA.AZ.6603	7	44407	63166233	20728	0.8645	LARGE-GAIN	NONFOCAL	286	Too-Many
TCGA.CM.5862	7	44407	67435531	21410	0.9365	LARGE-GAIN	NONFOCAL	307	Too-Many
TCGA.AG.3885	7	44407	84115235	25818	0.8027	LARGE-GAIN	NONFOCAL	379	Too-Many
TCGA.CM.5860	7	44407	89838808	27196	0.7108	LARGE-GAIN	NONFOCAL	396	Too-Many
TCGA.DY.A1DD	7	44407	110015587	32330	0.7976	LARGE-GAIN	NONFOCAL	592	Too-Many
TCGA.AA.3818	7	44407	110942873	32625	0.683	LARGE-GAIN	NONFOCAL	594	Too-Many
TCGA.DY.A1DF	7	44407	127962167	36673	0.8133	LARGE-GAIN	NONFOCAL	652	Too-Many
TCGA.AD.A5EK	7	44407	154960014	44478	0.8141	LARGE-GAIN	NONFOCAL	864	Too-Many
TCGA.AG.3612	7	44407	159119219	45822	0.7867	LARGE-GAIN	NONFOCAL	881	Too-Many
TCGA.CM.5348	7	46238	102737410	30034	1.0302	LARGE-GAIN	NONFOCAL	557	Too-Many
TCGA.AA.3941	7	112607	3329507	690	0.9112	LARGE-GAIN	NONFOCAL	35	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.A01F.01A	7	540008	158935086	5997	0.699	LARGE-GAIN	NONFOCAL	879	Too-Many
TCGA.AG.3605.01A	7	872099	7530145	21	1.1723	LARGE-GAIN	NONFOCAL	68	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PMS2,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3967.01A	7	1607283	2958974	111	0.7475	LARGE-GAIN	NONFOCAL	16	"AMZ1,BRAT1,CARD11,CHST12,EIF3B,ELFN1,FTSJ2,GNA12,GRIFIN,IQCE,LFNG,MAD1L1,NUDT1,PSMG3,SNX8,TTYH3"
TCGA.DM.A28F	7	2002732	11920872	3703	0.9742	LARGE-GAIN	NONFOCAL	61	"ACTB,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,CYTH3,DAGLB,EIF2AK1,EIF3B,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GLCCI1,GNA12,GRID2IP,GRIFIN,ICA1,IQCE,KDELR2,LFNG,MAD1L1,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PHF14,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,THSD7A,TNRC18,TTYH3,UMAD1,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3862.01A	7	2311433	2946235	77	0.707	LARGE-GAIN	NONFOCAL	11	"AMZ1,BRAT1,CARD11,CHST12,EIF3B,GNA12,GRIFIN,IQCE,LFNG,SNX8,TTYH3"
TCGA.AA.A00L.01A	7	2963816	5330316	87	0.9116	LARGE-GAIN	NONFOCAL	11	"AP5Z1,CARD11,FOXK1,MMD2,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,SDK1,SLC29A4,WIPI2"
TCGA.AA.3862.01A	7	2979336	5925618	187	0.7576	LARGE-GAIN	NONFOCAL	17	"ACTB,AP5Z1,CARD11,FBXL18,FOXK1,FSCN1,MMD2,OCM,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,TNRC18,WIPI2"
TCGA.AA.3941	7	3980562	6942468	712	0.8564	LARGE-GAIN	NONFOCAL	36	"ACTB,AIMP2,ANKRD61,AP5Z1,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3844	7	4401127	5880257	343	0.7059	LARGE-GAIN	NONFOCAL	14	"ACTB,AP5Z1,FBXL18,FOXK1,FSCN1,MMD2,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,RNF216,SLC29A4,TNRC18,WIPI2"
TCGA.AA.3967.01A	7	4838972	7277848	237	0.9023	LARGE-GAIN	NONFOCAL	34	"ACTB,AIMP2,ANKRD61,C1GALT1,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3861.01A	7	5359907	6154945	107	0.8481	LARGE-GAIN	NONFOCAL	14	"ACTB,AIMP2,ANKRD61,CCZ1,EIF2AK1,FBXL18,FSCN1,OCM,PMS2,RNF216,RSPH10B,RSPH10B2,TNRC18,USP42"
TCGA.AG.A014.01A	7	5662514	6864063	162	0.8993	LARGE-GAIN	NONFOCAL	22	"AIMP2,ANKRD61,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,OCM,PMS2,RAC1,RNF216,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3844	7	5901197	6776584	152	0.758	LARGE-GAIN	NONFOCAL	20	"AIMP2,ANKRD61,C7orf26,CCZ1,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,OCM,PMS2,RAC1,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.EI.6508	7	6370076	33265376	10884	0.7906	LARGE-GAIN	NONFOCAL	128	Too-Many
TCGA.A6.3810.01A	7	7273910	27194486	786	0.8518	LARGE-GAIN	NONFOCAL	76	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,C7orf31,C7orf71,CBX3,CCDC126,CDCA7L,COL28A1,CYCS,DFNA5,DGKB,DNAH11,ETV1,FAM126A,FAM221A,FERD3L,GLCCI1,GPNMB,HDAC9,HNRNPA2B1,HOXA1,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,ICA1,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MIOS,MPP6,NDUFA4,NFE2L3,NPVF,NPY,NUPL2,NXPH1,OSBPL3,PHF14,PRPS1L1,RAPGEF5,RPA3,SCIN,SKAP2,SNX10,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE"
TCGA.EI.6513	7	7590174	37293458	11952	0.7852	LARGE-GAIN	NONFOCAL	124	Too-Many
TCGA.AA.3679	7	10124330	38287926	11148	0.6935	LARGE-GAIN	NONFOCAL	123	Too-Many
TCGA.AZ.4684.01A	7	11080252	16666626	166	0.9471	LARGE-GAIN	NONFOCAL	14	"AGMO,ANKMY2,ARL4A,DGKB,ETV1,ISPD,LRRC72,MEOX2,PHF14,SCIN,SOSTDC1,THSD7A,TMEM106B,VWDE"
TCGA.AA.3495	7	11774240	34054387	8890	0.7581	LARGE-GAIN	NONFOCAL	106	Too-Many
TCGA.DM.A28F	7	11926346	57445245	16593	0.9752	LARGE-GAIN	NONFOCAL	203	Too-Many
TCGA.AA.3841	7	14736284	21398125	2710	0.708	LARGE-GAIN	NONFOCAL	23	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,BZW2,DGKB,FERD3L,HDAC9,ISPD,ITGB8,LRRC72,MACC1,MEOX2,PRPS1L1,SNX13,SOSTDC1,SP8,TMEM196,TSPAN13,TWIST1,TWISTNB"
TCGA.AZ.4684.01A	7	16913342	20698077	99	0.9595	LARGE-GAIN	NONFOCAL	12	"ABCB5,AGR3,AHR,FERD3L,HDAC9,ITGB8,MACC1,PRPS1L1,SNX13,TMEM196,TWIST1,TWISTNB"
TCGA.AA.3841	7	21400154	38290713	6531	0.7454	LARGE-GAIN	NONFOCAL	92	"ADCYAP1R1,ANLN,AOAH,AQP1,AVL9,BBS9,BMPER,C7orf31,C7orf71,CBX3,CCDC126,CCDC129,CDCA7L,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,DNAH11,DPY19L1,EEPD1,ELMO1,EPDR1,EVX1,FAM126A,FAM188B,FAM221A,FKBP14,FKBP9,GARS,GGCT,GHRHR,GPNMB,GPR141,HERPUD2,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,INMT,JAZF1,KBTBD2,KIAA0895,KLHL7,LSM5,MALSU1,MPP6,MTURN,NEUROD6,NFE2L3,NME8,NOD1,NPSR1,NPVF,NPY,NT5C3A,NUPL2,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRR15,RAPGEF5,RP9,SCRN1,SEPT7,SFRP4,SKAP2,SNX10,SP4,STARD3NL,STEAP1B,STK31,TAX1BP1,TBX20,TOMM7,TRA2A,TRIL,WIPF3,ZNRF2"
TCGA.AA.3967.01A	7	21906041	27565814	269	0.6803	LARGE-GAIN	NONFOCAL	42	"C7orf31,C7orf71,CBX3,CCDC126,CDCA7L,CYCS,DFNA5,DNAH11,EVX1,FAM126A,FAM221A,GPNMB,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,KLHL7,MALSU1,MPP6,NFE2L3,NPVF,NPY,NUPL2,OSBPL3,RAPGEF5,SKAP2,SNX10,STEAP1B,STK31,TOMM7,TRA2A"
TCGA.AA.A00L.01A	7	22534356	26404630	185	0.86	LARGE-GAIN	NONFOCAL	24	"C7orf31,CBX3,CCDC126,CYCS,DFNA5,FAM126A,FAM221A,GPNMB,HNRNPA2B1,IGF2BP3,IL6,KLHL7,MALSU1,MPP6,NFE2L3,NPVF,NPY,NUPL2,OSBPL3,SNX10,STEAP1B,STK31,TOMM7,TRA2A"
TCGA.G4.6299	7	25880061	61846305	10930	0.6785	LARGE-GAIN	NONFOCAL	152	Too-Many
TCGA.A6.3810.01A	7	27282643	55565248	1280	0.829	LARGE-GAIN	NONFOCAL	123	Too-Many
TCGA.AG.4009.01A	7	27285475	29976120	77	0.6994	LARGE-GAIN	NONFOCAL	11	"CHN2,CPVL,CREB5,EVX1,HIBADH,JAZF1,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3"
TCGA.AA.A00L.01A	7	27565814	63538537	1029	0.7614	LARGE-GAIN	NONFOCAL	135	Too-Many
TCGA.AG.4009.01A	7	30401930	35244031	248	0.7458	LARGE-GAIN	NONFOCAL	25	"ADCYAP1R1,AQP1,AVL9,BBS9,BMPER,CCDC129,CRHR2,DPY19L1,FAM188B,FKBP9,GARS,GGCT,GHRHR,INMT,KBTBD2,LSM5,NEUROD6,NOD1,NPSR1,NT5C3A,PDE1C,PPP1R17,RP9,TBX20,ZNRF2"
TCGA.G4.6294	7	30467563	35669692	1868	0.7314	LARGE-GAIN	NONFOCAL	24	"ADCYAP1R1,AQP1,AVL9,BBS9,BMPER,CCDC129,CRHR2,DPY19L1,FAM188B,FKBP9,GARS,GGCT,GHRHR,INMT,KBTBD2,LSM5,NEUROD6,NOD1,NPSR1,NT5C3A,PDE1C,PPP1R17,RP9,TBX20"
TCGA.AG.3909.01A	7	30655465	43846524	529	0.6903	LARGE-GAIN	NONFOCAL	52	"ADCYAP1R1,AMPH,ANLN,AOAH,AQP1,AVL9,BBS9,BLVRA,BMPER,C7orf25,CCDC129,CDK13,COA1,CRHR2,DPY19L1,EEPD1,ELMO1,EPDR1,FAM188B,FKBP9,GARS,GHRHR,GLI3,GPR141,HECW1,HERPUD2,INHBA,INMT,KBTBD2,KIAA0895,LSM5,MPLKIP,MRPL32,NEUROD6,NME8,NPSR1,NT5C3A,PDE1C,POU6F2,PPP1R17,PSMA2,RALA,RP9,SEPT7,SFRP4,STARD3NL,STK17A,SUGCT,TARP,TBX20,VPS41,YAE1D1"
TCGA.A6.3808.01A	7	36466478	39125433	133	0.8717	LARGE-GAIN	NONFOCAL	12	"AMPH,ANLN,AOAH,ELMO1,EPDR1,GPR141,NME8,POU6F2,SFRP4,STARD3NL,TARP,VPS41"
TCGA.EI.6513	7	37447917	64967235	7059	0.7525	LARGE-GAIN	NONFOCAL	101	Too-Many
TCGA.G4.6294	7	37855961	47291953	3126	1.0691	LARGE-GAIN	NONFOCAL	53	"ADCY1,AEBP1,AMPH,BLVRA,C7orf25,CAMK2B,CCM2,CDK13,COA1,DBNL,DDX56,EPDR1,GCK,GLI3,H2AFV,HECW1,IGFBP1,IGFBP3,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NUDCD3,OGDH,PGAM2,POLD2,POLM,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,TARP,TBRG4,TMED4,UBE2D4,URGCP,URGCP-MRPS24,VPS41,YAE1D1,YKT6,ZMIZ2"
TCGA.AA.A00N.01A	7	37955647	41739548	113	0.7383	LARGE-GAIN	NONFOCAL	13	"AMPH,CDK13,EPDR1,INHBA,MPLKIP,POU6F2,RALA,SFRP4,STARD3NL,SUGCT,TARP,VPS41,YAE1D1"
TCGA.AA.3679	7	38398046	110294962	18033	0.697	LARGE-GAIN	NONFOCAL	389	Too-Many
TCGA.AG.3592	7	38402495	65648900	6715	0.9066	LARGE-GAIN	NONFOCAL	98	"ABCA13,ADCY1,AEBP1,AMPH,ASL,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,CRCP,DBNL,DDC,DDX56,EGFR,ERV3-1,FIGNL1,GBAS,GCK,GLI3,GRB10,GUSB,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VKORC1L1,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZPBP"
TCGA.AA.3841	7	38408478	53105334	5098	0.7007	LARGE-GAIN	NONFOCAL	66	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CDK13,COA1,COBL,DBNL,DDC,DDX56,FIGNL1,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SPDYE1,STK17A,SUGCT,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VPS41,VWC2,YAE1D1,YKT6,ZMIZ2,ZPBP"
TCGA.AA.3664	7	41609933	45104130	1002	0.9908	LARGE-GAIN	NONFOCAL	34	"AEBP1,BLVRA,C7orf25,CAMK2B,CCM2,COA1,DBNL,DDX56,GCK,GLI3,H2AFV,HECW1,INHBA,MRPL32,MRPS24,MYL7,MYO1G,NPC1L1,NUDCD3,OGDH,PGAM2,POLD2,POLM,PPIA,PSMA2,PURB,SPDYE1,STK17A,TMED4,UBE2D4,URGCP,URGCP-MRPS24,YKT6,ZMIZ2"
TCGA.AA.3495	7	42599160	48606023	1906	0.6876	LARGE-GAIN	NONFOCAL	47	"ABCA13,ADCY1,AEBP1,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,CAMK2B,CCM2,COA1,DBNL,DDX56,GCK,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,PPIA,PSMA2,PURB,RAMP3,SPDYE1,STK17A,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,YKT6,ZMIZ2"
TCGA.AG.4009.01A	7	42976874	44120311	80	0.7733	LARGE-GAIN	NONFOCAL	13	"BLVRA,COA1,DBNL,HECW1,MRPL32,MRPS24,PGAM2,POLM,SPDYE1,STK17A,UBE2D4,URGCP,URGCP-MRPS24"
TCGA.AA.3664	7	45221684	61987337	4206	0.8035	LARGE-GAIN	NONFOCAL	39	"ABCA13,ADCY1,C7orf57,C7orf65,C7orf69,C7orf72,CCT6A,CHCHD2,COBL,DDC,EGFR,FIGNL1,GBAS,GRB10,HUS1,IGFBP1,IGFBP3,IKZF1,LANCL2,MRPS17,NUPR1L,PHKG1,PKD1L1,POM121L12,PSPH,RAMP3,SEC61G,SEPT14,SUMF2,SUN3,TNS3,UPP1,VOPP1,VSTM2A,VWC2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.CA.5797	7	45225707	66726273	4716	0.6973	LARGE-GAIN	NONFOCAL	59	"ABCA13,ADCY1,ASL,C7orf57,C7orf65,C7orf69,C7orf72,CCT6A,CHCHD2,COBL,CRCP,DDC,EGFR,ERV3-1,FIGNL1,GBAS,GRB10,GUSB,HUS1,IGFBP1,IGFBP3,IKZF1,KCTD7,LANCL2,MRPS17,NUPR1L,PHKG1,PKD1L1,POM121L12,PSPH,RABGEF1,SBDS,SEC61G,SEPT14,SUMF2,SUN3,TMEM248,TNS3,TPST1,TYW1,UPP1,VKORC1L1,VOPP1,VSTM2A,VWC2,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZPBP"
TCGA.AG.4009.01A	7	48015156	51152814	146	0.6878	LARGE-GAIN	NONFOCAL	13	"ABCA13,C7orf57,C7orf72,COBL,DDC,FIGNL1,GRB10,HUS1,IKZF1,SUN3,UPP1,VWC2,ZPBP"
TCGA.G4.6294	7	53593510	63166233	1092	0.7253	LARGE-GAIN	NONFOCAL	17	"CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,ZNF479,ZNF713,ZNF716"
TCGA.AA.3941	7	55020735	56669714	377	0.7594	LARGE-GAIN	NONFOCAL	13	"CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,PSPH,SEPT14,SUMF2,VOPP1,ZNF713"
TCGA.AA.3862.01A	7	56006648	57522149	57	1.3195	LARGE-GAIN	NONFOCAL	11	"CCT6A,CHCHD2,GBAS,MRPS17,NUPR1L,PHKG1,PSPH,SUMF2,ZNF479,ZNF713,ZNF716"
TCGA.AA.3861.01A	7	56006648	64389310	98	0.7574	LARGE-GAIN	NONFOCAL	19	"CCT6A,CHCHD2,GBAS,MRPS17,NUPR1L,PHKG1,PSPH,SUMF2,ZNF107,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.AA.A00Q.01A	7	56171868	64864152	38	0.7285	LARGE-GAIN	NONFOCAL	15	"CHCHD2,ERV3-1,NUPR1L,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AZ.4684.01A	7	57528393	64864152	46	0.9007	LARGE-GAIN	NONFOCAL	12	"ERV3-1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AG.A036.01A	7	63143336	65051057	60	0.9202	LARGE-GAIN	NONFOCAL	11	"ERV3-1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.3941	7	72896549	76137283	284	0.9665	LARGE-GAIN	NONFOCAL	44	"ABHD11,BAZ1B,BCL7B,CCL24,CCL26,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,LAT2,LIMK1,MDH2,MLXIPL,NCF1,POM121C,POR,RFC2,RHBDD2,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TRIM73,TRIM74,VPS37D,WBSCR16,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.AG.3909.01A	7	76796935	82595078	237	0.7446	LARGE-GAIN	NONFOCAL	15	"CACNA2D1,CCDC146,CD36,FGL2,GNAI1,GNAT3,GSAP,HGF,MAGI2,PCLO,PHTF2,PTPN12,RSBN1L,SEMA3C,TMEM60"
TCGA.AZ.4684.01A	7	77407613	87027813	261	0.9729	LARGE-GAIN	NONFOCAL	19	"CACNA2D1,CD36,CROT,DMTF1,GNAI1,GNAT3,GRM3,HGF,KIAA1324L,MAGI2,PCLO,PHTF2,RSBN1L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,TMEM243,TMEM60"
TCGA.CK.5914.01A	7	77756466	87179437	304	0.7925	LARGE-GAIN	NONFOCAL	18	"ABCB1,ABCB4,CACNA2D1,CD36,CROT,DMTF1,GNAI1,GNAT3,GRM3,HGF,KIAA1324L,MAGI2,PCLO,SEMA3A,SEMA3C,SEMA3D,SEMA3E,TMEM243"
TCGA.AA.A00N.01A	7	77807272	86594173	211	0.7914	LARGE-GAIN	NONFOCAL	13	"CACNA2D1,CD36,GNAI1,GNAT3,GRM3,HGF,KIAA1324L,MAGI2,PCLO,SEMA3A,SEMA3C,SEMA3D,SEMA3E"
TCGA.AG.3909.01A	7	82791653	87199426	155	0.6945	LARGE-GAIN	NONFOCAL	11	"ABCB1,ABCB4,CROT,DMTF1,GRM3,KIAA1324L,PCLO,SEMA3A,SEMA3D,SEMA3E,TMEM243"
TCGA.AG.3885	7	84401936	142412187	15064	0.728	LARGE-GAIN	NONFOCAL	380	Too-Many
TCGA.A6.5667	7	86748297	97963716	2912	0.7318	LARGE-GAIN	NONFOCAL	65	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BAIAP2L1,BET1,BHLHA15,BRI3,C7orf62,C7orf76,CALCR,CASD1,CCDC132,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNG11,GNGT1,GTPBP10,HEPACAM2,KRIT1,LMTK2,LRRD1,MTERF1,OCM2,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TECPR1,TFPI2,TMEM243,ZNF804B"
TCGA.AZ.4684.01A	7	93055651	95668547	166	0.8479	LARGE-GAIN	NONFOCAL	16	"ASB4,BET1,CALCR,CASD1,COL1A2,DYNC1I1,GNG11,GNGT1,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SGCE,TFPI2"
TCGA.AY.4070	7	94588969	97177701	753	1.1166	LARGE-GAIN	NONFOCAL	13	"ASB4,C7orf76,DLX5,DLX6,DYNC1I1,PDK4,PON1,PON2,PON3,PPP1R9A,SDHAF3,SHFM1,SLC25A13"
TCGA.AG.A014.01A	7	97365536	98503748	70	0.7481	LARGE-GAIN	NONFOCAL	11	"ASNS,BAIAP2L1,BHLHA15,BRI3,LMTK2,NPTX2,OCM2,TAC1,TECPR1,TMEM130,TRRAP"
TCGA.AA.3941	7	97612023	99171448	308	0.8513	LARGE-GAIN	NONFOCAL	24	"ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,CPSF4,FAM200A,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SMURF1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789"
TCGA.AA.3844	7	97620777	99171448	305	0.6834	LARGE-GAIN	NONFOCAL	23	"ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,CPSF4,FAM200A,KPNA7,LMTK2,NPTX2,PDAP1,PTCD1,SMURF1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789"
TCGA.AY.4070	7	98559240	103379896	741	0.8516	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.AG.A014.01A	7	98649841	100489933	433	0.7069	LARGE-GAIN	NONFOCAL	71	"ACHE,ACTL6B,AGFG2,AP4M1,ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,AZGP1,BUD31,C7orf43,C7orf61,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,EPHB4,EPO,FAM200A,FBXO24,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,GS1-259H13.2,KPNA7,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,NYAP1,OR2AE1,PCOLCE,PDAP1,PILRA,PILRB,POP7,PPP1R35,PTCD1,PVRIG,SAP25,SLC12A9,SMURF1,SPDYE3,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIP6,TSC22D4,UFSP1,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AA.3941	7	99388999	102102163	386	0.911	LARGE-GAIN	NONFOCAL	73	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,AP4M1,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CUX1,CYP3A43,EPHB4,EPO,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAT16,NYAP1,OR2AE1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,POP7,PPP1R35,PRKRIP1,PVRIG,SAP25,SERPINE1,SH2B2,SLC12A9,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AA.3844	7	99415404	102406569	389	0.7137	LARGE-GAIN	NONFOCAL	83	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,AP4M1,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CUX1,CYP3A43,EPHB4,EPO,FAM185A,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,LRWD1,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAT16,NYAP1,OR2AE1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,POLR2J,POLR2J2,POLR2J3,POP7,PPP1R35,PRKRIP1,PVRIG,RASA4,RASA4B,SAP25,SERPINE1,SH2B2,SLC12A9,SPDYE2,SPDYE2B,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,UPK3BL,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AG.3906.01A	7	100016674	100193147	40	0.7632	LARGE-GAIN	NONFOCAL	11	"AGFG2,C7orf61,FBXO24,LRCH4,MEPCE,NYAP1,PPP1R35,SAP25,TSC22D4,ZASP,ZCWPW1"
TCGA.AZ.4684.01A	7	105908883	113518947	327	0.7218	LARGE-GAIN	NONFOCAL	30	"BCAP29,C7orf60,C7orf66,CBLL1,CCDC71L,COG5,DLD,DNAJB9,DOCK4,DUS4L,GPR22,GPR85,HBP1,IFRD1,IMMP2L,LAMB1,LAMB4,LRRN3,LSMEM1,NAMPT,NRCAM,PIK3CG,PNPLA8,PPP1R3A,PRKAR2B,SLC26A3,SLC26A4,THAP5,TMEM168,ZNF277"
TCGA.DY.A1DD	7	110125791	159119219	13679	0.7943	LARGE-GAIN	NONFOCAL	289	Too-Many
TCGA.AA.3679	7	110763562	159119219	13483	0.6884	LARGE-GAIN	NONFOCAL	289	Too-Many
TCGA.AA.3818	7	111159895	142338189	8261	0.6805	LARGE-GAIN	NONFOCAL	165	Too-Many
TCGA.AZ.4684.01A	7	114269795	120610701	193	0.7422	LARGE-GAIN	NONFOCAL	18	"ANKRD7,ASZ1,CAPZA2,CAV1,CAV2,CFTR,CTTNBP2,FOXP2,ING3,KCND2,LSM8,MDFIC,MET,ST7,TES,TFEC,TSPAN12,WNT2"
TCGA.AZ.4684.01A	7	120613177	126698104	212	1.0679	LARGE-GAIN	NONFOCAL	24	"AASS,ASB15,C7orf77,CADPS2,CPED1,FAM3C,FEZF1,GPR37,GRM8,HYAL4,ING3,IQUB,LMOD2,NDUFA5,POT1,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,WASL,WNT16"
TCGA.AA.A00N.01A	7	121985580	123516767	86	0.7114	LARGE-GAIN	NONFOCAL	11	"ASB15,CADPS2,HYAL4,IQUB,LMOD2,NDUFA5,RNF133,RNF148,SLC13A1,TAS2R16,WASL"
TCGA.AA.A01Z	7	126912694	137816373	3318	1.0927	LARGE-GAIN	NONFOCAL	74	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ARF5,ATP6V1F,BPGM,C7orf49,C7orf73,CALD1,CALU,CCDC136,CEP41,CHCHD3,CHRM2,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DGKI,EXOC4,FAM180A,FAM71F1,FAM71F2,FLNC,FSCN3,GCC1,HILPDA,IMPDH1,IRF5,KCP,KLF14,KLHDC10,LEP,LOC100130705,LOC100130880,LRGUK,LRRC4,LUZP6,MEST,METTL2B,MKLN1,MTPN,NRF1,NUP205,OPN1SW,PAX4,PLXNA4,PODXL,PRRT4,PTN,RBM28,SLC13A4,SLC35B4,SMKR1,SMO,SND1,SSMEM1,STRA8,STRIP2,TMEM140,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,WDR91,ZC3HC1,ZNF800"
TCGA.AA.3982	7	127557492	129047367	312	0.9216	LARGE-GAIN	NONFOCAL	22	"AHCYL2,ATP6V1F,CALU,CCDC136,FAM71F1,FAM71F2,FLNC,HILPDA,IMPDH1,IRF5,KCP,LEP,LOC100130705,LRRC4,METTL2B,OPN1SW,PRRT4,RBM28,SMO,SND1,TNPO3,TSPAN33"
TCGA.AA.3941	7	127624356	128976322	291	0.8205	LARGE-GAIN	NONFOCAL	22	"AHCYL2,ATP6V1F,CALU,CCDC136,FAM71F1,FAM71F2,FLNC,HILPDA,IMPDH1,IRF5,KCP,LEP,LOC100130705,LRRC4,METTL2B,OPN1SW,PRRT4,RBM28,SMO,SND1,TNPO3,TSPAN33"
TCGA.DY.A1DF	7	127966625	159119219	9372	0.8132	LARGE-GAIN	NONFOCAL	230	Too-Many
TCGA.AA.3941	7	129086287	132508580	1063	0.6926	LARGE-GAIN	NONFOCAL	21	"CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,KLF14,KLHDC10,MEST,MKLN1,NRF1,PLXNA4,PODXL,SMKR1,SSMEM1,STRIP2,TMEM209,TSGA13,UBE2H,ZC3HC1"
TCGA.AG.3909.01A	7	135047586	139661680	304	0.7301	LARGE-GAIN	NONFOCAL	29	"AKR1D1,ATP6V0A4,C7orf55,C7orf55-LUC7L2,C7orf73,CHRM2,CLEC2L,CNOT4,CREB3L2,DGKI,FAM180A,HIPK2,KIAA1549,KLRG2,LOC100130880,LUC7L2,LUZP6,MTPN,NUP205,PTN,SLC13A4,SVOPL,TBXAS1,TMEM213,TRIM24,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.A01Z	7	137827450	141795280	1029	1.104	LARGE-GAIN	NONFOCAL	39	"ADCK2,AGK,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CLEC2L,CLEC5A,DENND2A,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LUC7L2,MGAM,MKRN1,MRPS33,NDUFB2,OR9A4,PARP12,PRSS37,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.3660	7	140071612	157445994	5298	0.6805	LARGE-GAIN	NONFOCAL	142	Too-Many
TCGA.AG.3909.01A	7	140487265	141957407	114	0.8701	LARGE-GAIN	NONFOCAL	17	"AGK,BRAF,CLEC5A,KIAA1147,MGAM,MGAM2,MRPS33,OR9A4,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TMEM178B,WEE2"
TCGA.AA.A00N.01A	7	141464037	142460682	69	0.9328	LARGE-GAIN	NONFOCAL	12	"CLEC5A,MGAM,MGAM2,MTRNR2L6,OR9A4,PRSS1,PRSS37,PRSS58,TAS2R3,TAS2R38,TAS2R4,TAS2R5"
TCGA.AG.3885	7	142500466	159119219	5138	0.7019	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.AA.A01Z	7	142827953	143803914	174	1.1456	LARGE-GAIN	NONFOCAL	22	"CASP2,CLCN1,CTAGE15,CTAGE6,EPHA1,FAM131B,GSTK1,OR2A12,OR2A25,OR2A5,OR2F1,OR2F2,OR6B1,PIP,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM139,ZYX"
TCGA.AA.A02H.01A	7	143091910	143928964	37	0.7893	LARGE-GAIN	NONFOCAL	17	"ARHGEF35,CTAGE15,CTAGE4,CTAGE6,EPHA1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A5,OR2F1,OR2F2,OR6B1,TAS2R41,TAS2R60,TCAF1,TCAF2"
TCGA.AA.A00Q.01A	7	143140539	144076941	31	0.7482	LARGE-GAIN	NONFOCAL	21	"ARHGEF35,ARHGEF5,CTAGE15,CTAGE4,CTAGE6,CTAGE8,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TAS2R41,TAS2R60,TCAF1,TCAF2"
TCGA.AA.A010.01A	7	143174939	143792821	18	0.7476	LARGE-GAIN	NONFOCAL	11	"CTAGE15,CTAGE6,OR2A12,OR2A25,OR2A5,OR2F1,OR2F2,OR6B1,TAS2R41,TCAF1,TCAF2"
TCGA.AA.A00N.01A	7	143174939	143826188	19	0.969	LARGE-GAIN	NONFOCAL	12	"CTAGE15,CTAGE6,OR2A12,OR2A2,OR2A25,OR2A5,OR2F1,OR2F2,OR6B1,TAS2R41,TCAF1,TCAF2"
TCGA.AA.3941	7	150268097	151841378	515	0.81	LARGE-GAIN	NONFOCAL	33	"ABCB8,ABCF2,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CRYGN,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,IQCA1L,KCNH2,KMT2C,NOS3,NUB1,PRKAG2,RHEB,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,WDR86"
TCGA.DC.6154	7	152048206	159119219	2439	0.6808	LARGE-GAIN	NONFOCAL	23	"ACTR3B,CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60,XRCC2"
TCGA.AD.A5EK	7	154966513	159119219	1317	0.8015	LARGE-GAIN	NONFOCAL	17	"CNPY1,DNAJB6,EN2,ESYT2,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.3941	7	155655521	159046948	1063	0.7998	LARGE-GAIN	NONFOCAL	12	"DNAJB6,ESYT2,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RNF32,UBE3C,VIPR2,WDR60"
TCGA.D5.6538	8	164983	11009316	6427	0.8197	LARGE-GAIN	NONFOCAL	56	"AGPAT5,ANGPT2,ARHGEF10,C8orf74,CLDN23,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FBXO25,KBTBD11,MCPH1,MFHAS1,MSRA,MYOM2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705G"
TCGA.4T.AA8H	8	238515	76524362	26561	0.6937	LARGE-GAIN	NONFOCAL	353	Too-Many
TCGA.AA.3941	8	6023052	6921876	707	0.7584	LARGE-GAIN	NONFOCAL	11	"AGPAT5,ANGPT2,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,MCPH1,XKR5"
TCGA.AA.3861.01A	8	7190927	7693959	12	1.6169	LARGE-GAIN	NONFOCAL	17	"DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4B,PRR23D1,PRR23D2,SPAG11B,USP17L1,USP17L4,ZNF705G"
TCGA.AA.3862.01A	8	7308593	7686275	6	2.0807	LARGE-GAIN	NONFOCAL	11	"DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,PRR23D1,PRR23D2,SPAG11B"
TCGA.AA.3941	8	9579679	11840430	1167	0.6807	LARGE-GAIN	NONFOCAL	18	"BLK,C8orf74,CTSB,DEFB135,DEFB136,FAM167A,FDFT1,GATA4,MSRA,MTMR9,NEIL2,PINX1,PRSS55,RP1L1,SLC35G5,SOX7,TNKS,XKR6"
TCGA.D5.6538	8	11016443	11877194	408	0.732	LARGE-GAIN	NONFOCAL	12	"BLK,CTSB,DEFB134,DEFB135,DEFB136,FAM167A,FDFT1,GATA4,MTMR9,NEIL2,SLC35G5,XKR6"
TCGA.D5.6538	8	12556041	122818897	32269	0.8465	LARGE-GAIN	NONFOCAL	437	Too-Many
TCGA.AA.3941	8	21549017	23693430	665	0.7714	LARGE-GAIN	NONFOCAL	37	"BIN3,BMP1,C8orf58,CCAR2,CHMP7,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,GFRA2,HR,LGI3,LOXL2,NKX2-6,NKX3-1,NPM2,NUDT18,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,R3HCC1,REEP4,RHOBTB2,SFTPC,SLC25A37,SLC39A14,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,XPO7"
TCGA.A6.5666	8	27905887	30386290	811	0.6973	LARGE-GAIN	NONFOCAL	16	"DCTN6,DUSP4,ELP3,EXTL3,FBXO16,FZD3,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NUGGC,PNOC,RBPMS,SARAF,ZNF395"
TCGA.DY.A1DD	8	28452798	146293413	33475	0.7554	LARGE-GAIN	NONFOCAL	482	Too-Many
TCGA.AA.3870	8	28881327	30823715	592	0.6975	LARGE-GAIN	NONFOCAL	14	"DCTN6,DUSP4,GSR,GTF2E2,HMBOX1,KIF13B,LEPROTL1,MBOAT4,PPP2CB,RBPMS,SARAF,SMIM18,TEX15,UBXN8"
TCGA.AA.3854	8	29143340	31020158	595	0.8406	LARGE-GAIN	NONFOCAL	14	"DCTN6,DUSP4,GSR,GTF2E2,LEPROTL1,MBOAT4,PPP2CB,PURG,RBPMS,SARAF,SMIM18,TEX15,UBXN8,WRN"
TCGA.D5.6533	8	29475783	31050274	471	0.9405	LARGE-GAIN	NONFOCAL	13	"DCTN6,GSR,GTF2E2,LEPROTL1,MBOAT4,PPP2CB,PURG,RBPMS,SARAF,SMIM18,TEX15,UBXN8,WRN"
TCGA.AG.3594	8	33004630	42274263	2350	0.8154	LARGE-GAIN	NONFOCAL	52	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,DKK4,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MAK16,NKX6-3,PLAT,PLEKHA2,POLB,PPAPDC1B,PROSC,RAB11FIP1,RNF122,SFRP1,SLC20A2,STAR,TACC1,TM2D2,TTI2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.AG.3893	8	35916717	39398021	678	0.8046	LARGE-GAIN	NONFOCAL	26	"ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.D5.6898	8	35956155	146293413	31183	0.8676	LARGE-GAIN	NONFOCAL	457	Too-Many
TCGA.D5.5541	8	36615251	99463046	15898	1.0171	LARGE-GAIN	NONFOCAL	244	Too-Many
TCGA.CL.5917	8	36760399	146293413	31030	0.836	LARGE-GAIN	NONFOCAL	457	Too-Many
TCGA.AA.3941	8	36945118	39002752	428	0.7105	LARGE-GAIN	NONFOCAL	25	"ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.AZ.4614	8	37645465	39820618	338	0.8256	LARGE-GAIN	NONFOCAL	26	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1"
TCGA.EI.6883	8	37674864	39830699	345	0.7045	LARGE-GAIN	NONFOCAL	26	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1"
TCGA.A6.2675	8	37828953	46924356	1330	0.8841	LARGE-GAIN	NONFOCAL	47	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,FGFR1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4"
TCGA.DC.6682	8	37971941	39866465	348	0.9179	LARGE-GAIN	NONFOCAL	20	"ADAM18,ADAM2,ADAM32,ADAM9,ASH2L,BAG4,C8orf86,DDHD2,FGFR1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,STAR,TACC1,TM2D2,WHSC1L1"
TCGA.AA.3688	8	37971941	46924210	1336	0.9551	LARGE-GAIN	NONFOCAL	46	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,FGFR1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4"
TCGA.AA.3495	8	37971941	146293413	30804	0.7408	LARGE-GAIN	NONFOCAL	447	Too-Many
TCGA.CK.5912	8	37989304	41697077	1072	0.8577	LARGE-GAIN	NONFOCAL	28	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,ASH2L,BAG4,C8orf4,C8orf86,DDHD2,FGFR1,GINS4,GOLGA7,HTRA4,IDO1,IDO2,LETM2,LSM1,NKX6-3,PLEKHA2,PPAPDC1B,SFRP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.G4.6303	8	38043757	39120663	194	1.5608	LARGE-GAIN	NONFOCAL	13	"ADAM32,ADAM9,BAG4,C8orf86,DDHD2,FGFR1,HTRA4,LETM2,PLEKHA2,PPAPDC1B,TACC1,TM2D2,WHSC1L1"
TCGA.A6.2677	8	38043757	39225940	191	0.9033	LARGE-GAIN	NONFOCAL	13	"ADAM32,ADAM9,BAG4,C8orf86,DDHD2,FGFR1,HTRA4,LETM2,PLEKHA2,PPAPDC1B,TACC1,TM2D2,WHSC1L1"
TCGA.D5.6923	8	38105996	135108992	27005	0.7521	LARGE-GAIN	NONFOCAL	343	Too-Many
TCGA.RU.A8FL	8	38160042	46924210	1312	1.0735	LARGE-GAIN	NONFOCAL	40	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,C8orf4,C8orf86,CHRNA6,CHRNB3,DKK4,FGFR1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4"
TCGA.G4.6626	8	38298646	40436773	624	1.3047	LARGE-GAIN	NONFOCAL	14	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,C8orf86,FGFR1,HTRA4,IDO1,IDO2,PLEKHA2,TACC1,TM2D2,ZMAT4"
TCGA.A6.5662	8	38665776	40491774	545	0.9202	LARGE-GAIN	NONFOCAL	12	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,HTRA4,IDO1,IDO2,PLEKHA2,TACC1,TM2D2,ZMAT4"
TCGA.DM.A1D0	8	38866217	43778913	1154	0.9946	LARGE-GAIN	NONFOCAL	32	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.A6.2671	8	38911809	46924356	1155	0.8093	LARGE-GAIN	NONFOCAL	32	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AA.A02W.01A	8	39141038	145140474	3499	0.8037	LARGE-GAIN	NONFOCAL	394	Too-Many
TCGA.AA.3867	8	39604490	47325113	1079	0.7954	LARGE-GAIN	NONFOCAL	29	"ADAM2,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.G4.6295	8	39636320	146293413	30530	0.6999	LARGE-GAIN	NONFOCAL	430	Too-Many
TCGA.AG.A01J.01A	8	40438654	68129980	865	0.7525	LARGE-GAIN	NONFOCAL	96	"ADHFE1,AGPAT6,ANK1,AP3M2,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,COPS5,CRH,CSPP1,CYP7A1,CYP7B1,DKK4,DNAJC5B,EFCAB1,FAM110B,FAM150A,FNTA,GGH,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,IMPAD1,KAT6A,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NKX6-3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PLAT,POLB,POMK,POTEA,PPP1R42,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,RRS1,SDCBP,SDR16C5,SFRP1,SGK3,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TCF24,TGS1,THAP1,TMEM68,TOX,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,VDAC3,XKR4,YTHDF3,ZMAT4"
TCGA.AZ.6607	8	40619357	43663674	601	0.7746	LARGE-GAIN	NONFOCAL	25	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AA.3941	8	40635669	43078987	552	0.769	LARGE-GAIN	NONFOCAL	24	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.F5.6863	8	40815141	43762680	533	0.6935	LARGE-GAIN	NONFOCAL	24	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.EI.6885	8	40880406	43778913	518	0.9378	LARGE-GAIN	NONFOCAL	24	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AM.5821	8	41091788	42404821	337	0.7223	LARGE-GAIN	NONFOCAL	15	"AGPAT6,ANK1,AP3M2,DKK4,GINS4,GOLGA7,IKBKB,KAT6A,NKX6-3,PLAT,POLB,SFRP1,SLC20A2,SMIM19,VDAC3"
TCGA.AA.3544	8	41091788	43778913	455	1.0009	LARGE-GAIN	NONFOCAL	24	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.G4.6306	8	41365707	73025541	7527	0.9207	LARGE-GAIN	NONFOCAL	107	Too-Many
TCGA.AA.3494	8	41374340	142197680	29083	0.9193	LARGE-GAIN	NONFOCAL	333	Too-Many
TCGA.AZ.6606	8	41455003	42705701	284	1.4224	LARGE-GAIN	NONFOCAL	16	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,IKBKB,KAT6A,NKX6-3,PLAT,POLB,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AA.A01S	8	41563684	47489515	356	0.81455	LARGE-GAIN	NONFOCAL	19	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,KAT6A,PLAT,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AF.3913	8	41702609	42711605	177	0.679	LARGE-GAIN	NONFOCAL	14	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,IKBKB,KAT6A,PLAT,POLB,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AG.3584	8	41747761	146293413	29716	0.7244	LARGE-GAIN	NONFOCAL	420	Too-Many
TCGA.CM.6676	8	41885119	42986487	158	1.0684	LARGE-GAIN	NONFOCAL	16	"AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,HOOK3,IKBKB,KAT6A,PLAT,POLB,POMK,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AF.2690	8	42140548	46924210	163	0.9739	LARGE-GAIN	NONFOCAL	15	"CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AA.A00D.01A	8	42323247	43173552	64	1.1738	LARGE-GAIN	NONFOCAL	11	"CHRNA6,CHRNB3,FNTA,HGSNAT,HOOK3,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1"
TCGA.AA.A02J.01A	8	42552629	126194308	2692	0.9343	LARGE-GAIN	NONFOCAL	290	Too-Many
TCGA.AG.3612	8	42604790	146293413	29429	0.9089	LARGE-GAIN	NONFOCAL	409	Too-Many
TCGA.AA.3956	8	43499144	104060259	15386	0.6966	LARGE-GAIN	NONFOCAL	210	Too-Many
TCGA.A6.6142	8	43657036	146293413	29496	0.6952	LARGE-GAIN	NONFOCAL	401	Too-Many
TCGA.AG.4021	8	43762680	145509127	29343	0.6965	LARGE-GAIN	NONFOCAL	370	Too-Many
TCGA.G4.6307	8	43762680	146293413	29492	1.0141	LARGE-GAIN	NONFOCAL	401	Too-Many
TCGA.AG.A02N	8	43778913	96044966	12958	0.7065	LARGE-GAIN	NONFOCAL	170	Too-Many
TCGA.AA.3979	8	46924210	72693869	6977	1.1082	LARGE-GAIN	NONFOCAL	82	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,EYA1,FAM110B,FAM150A,GGH,IMPAD1,LACTB2,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NCOA2,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PRDM14,PREX2,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SLCO5A1,SNAI2,SNTG1,SOX17,SPIDR,ST18,SULF1,TCEA1,TCF24,TGS1,TMEM68,TOX,TRAM1,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,XKR4,XKR9,YTHDF3"
TCGA.NH.A6GB	8	46924210	112170435	17668	0.738	LARGE-GAIN	NONFOCAL	234	Too-Many
TCGA.A6.5660	8	46924210	145601351	29285	0.85	LARGE-GAIN	NONFOCAL	377	Too-Many
TCGA.AA.3529	8	46924210	146293413	29470	0.8105	LARGE-GAIN	NONFOCAL	401	Too-Many
TCGA.CM.5341	8	46924210	146293413	29462	0.7906	LARGE-GAIN	NONFOCAL	401	Too-Many
TCGA.CM.6676	8	46924210	146293413	29367	1.1361	LARGE-GAIN	NONFOCAL	401	Too-Many
TCGA.EI.6885	8	46924210	146293413	29401	1.3442	LARGE-GAIN	NONFOCAL	401	Too-Many
TCGA.G4.6317	8	46924210	146293413	29467	0.7056	LARGE-GAIN	NONFOCAL	401	Too-Many
TCGA.A6.5667	8	47136694	146293413	29459	0.7016	LARGE-GAIN	NONFOCAL	401	Too-Many
TCGA.AA.3509.01A	8	49641554	54714311	110	0.6943	LARGE-GAIN	NONFOCAL	12	"ATP6V1H,C8orf22,EFCAB1,FAM150A,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,SNAI2,SNTG1,ST18"
TCGA.AA.3544	8	49658065	146293413	29164	0.9616	LARGE-GAIN	NONFOCAL	395	Too-Many
TCGA.AG.A01N.01A	8	49831316	95704858	1294	0.7507	LARGE-GAIN	NONFOCAL	159	Too-Many
TCGA.AA.A01S	8	50090159	146293413	29034	0.87175	LARGE-GAIN	NONFOCAL	393	Too-Many
TCGA.CM.6169	8	52385605	146293413	28271	0.681	LARGE-GAIN	NONFOCAL	392	Too-Many
TCGA.CM.6172	8	53861674	60022370	2056	1.2139	LARGE-GAIN	NONFOCAL	25	"ATP6V1H,CHCHD7,CYP7A1,FAM110B,IMPAD1,LYN,LYPLA1,MOS,MRPL15,NSMAF,OPRK1,PENK,PLAG1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SOX17,TCEA1,TGS1,TMEM68,TOX,UBXN2B,XKR4"
TCGA.AA.A00D.01A	8	54682126	57221440	80	0.9931	LARGE-GAIN	NONFOCAL	16	"ATP6V1H,CHCHD7,LYN,LYPLA1,MOS,MRPL15,PLAG1,RGS20,RP1,RPS20,SDR16C5,SOX17,TCEA1,TGS1,TMEM68,XKR4"
TCGA.CM.5862	8	55501637	146203345	27404	1.0242	LARGE-GAIN	NONFOCAL	378	Too-Many
TCGA.A6.5656	8	55674616	85032003	8355	0.7612	LARGE-GAIN	NONFOCAL	99	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHCHD7,CHD7,CHMP4C,CLVS1,COPS5,CPA6,CRH,CRISPLD1,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EYA1,FABP12,FABP4,FABP5,FABP9,FAM110B,GDAP1,GGH,HEY1,HNF4G,IL7,IMPA1,IMPAD1,JPH1,KCNB2,LACTB2,LY96,LYN,MCMDC2,MOS,MRPS28,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NSMAF,PAG1,PDE7A,PENK,PEX2,PI15,PKIA,PLAG1,PMP2,PPP1R42,PRDM14,PREX2,RAB2A,RDH10,RPL7,RPS20,RRS1,SBSPON,SDCBP,SDR16C5,SGK3,SLC10A5,SLCO5A1,SNX16,STAU2,STMN2,SULF1,TCEB1,TCF24,TERF1,TGS1,TMEM68,TMEM70,TOX,TPD52,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,UBXN2B,VCPIP1,XKR4,XKR9,YTHDF3,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AA.A00D.01A	8	57224679	87162292	646	0.7068	LARGE-GAIN	NONFOCAL	101	Too-Many
TCGA.A6.2677	8	60425780	67492340	1707	0.7105	LARGE-GAIN	NONFOCAL	21	"ADHFE1,ARMC1,ASPH,BHLHE22,C8orf46,CA8,CHD7,CLVS1,CRH,CYP7B1,DNAJC5B,GGH,MTFR1,MYBL1,NKAIN3,PDE7A,RAB2A,RRS1,TRIM55,TTPA,YTHDF3"
TCGA.DY.A1DC	8	60673485	78810096	5164	0.6885	LARGE-GAIN	NONFOCAL	62	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CRISPLD1,CSPP1,CYP7B1,DNAJC5B,EYA1,GDAP1,GGH,HNF4G,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,PDE7A,PEX2,PI15,PPP1R42,PRDM14,PREX2,RAB2A,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,VCPIP1,XKR9,YTHDF3,ZFHX4"
TCGA.RU.A8FL	8	62152900	146293413	25274	0.7392	LARGE-GAIN	NONFOCAL	358	Too-Many
TCGA.AZ.4684.01A	8	64081402	68131615	177	0.953	LARGE-GAIN	NONFOCAL	23	"ADHFE1,ARFGEF1,ARMC1,BHLHE22,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CRH,CSPP1,CYP7B1,DNAJC5B,MCMDC2,MTFR1,MYBL1,PDE7A,PPP1R42,RRS1,SGK3,TCF24,TRIM55,VCPIP1,YTHDF3"
TCGA.AF.3913	8	64272424	69879172	1266	0.7891	LARGE-GAIN	NONFOCAL	25	"ADHFE1,ARFGEF1,ARMC1,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CPA6,CRH,CSPP1,CYP7B1,DNAJC5B,MCMDC2,MTFR1,MYBL1,PDE7A,PPP1R42,PREX2,RRS1,SGK3,TCF24,TRIM55,VCPIP1"
TCGA.AG.A01Y	8	66126853	79193949	3753	0.8289	LARGE-GAIN	NONFOCAL	51	"ADHFE1,ARFGEF1,ARMC1,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,COPS5,CPA6,CRH,CRISPLD1,CSPP1,DNAJC5B,EYA1,GDAP1,HNF4G,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,PDE7A,PEX2,PI15,PPP1R42,PRDM14,PREX2,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TRAM1,TRIM55,TRPA1,UBE2W,VCPIP1,XKR9,ZFHX4"
TCGA.AA.3660	8	67383783	146233069	23955	0.8927	LARGE-GAIN	NONFOCAL	341	Too-Many
TCGA.AA.A02E.01A	8	68005731	80678830	362	0.7368	LARGE-GAIN	NONFOCAL	38	"ARFGEF1,C8orf34,C8orf89,CPA6,CRISPLD1,CSPP1,EYA1,GDAP1,HEY1,HNF4G,IL7,JPH1,KCNB2,LACTB2,LY96,MSC,NCOA2,PEX2,PI15,PKIA,PRDM14,PREX2,RDH10,RPL7,SBSPON,SLCO5A1,STAU2,STMN2,SULF1,TCEB1,TERF1,TMEM70,TRAM1,TRPA1,UBE2W,XKR9,ZC2HC1A,ZFHX4"
TCGA.AG.A01J.01A	8	68131615	126194308	2012	0.9964	LARGE-GAIN	NONFOCAL	211	Too-Many
TCGA.CA.5797	8	69217173	86932054	4766	0.8232	LARGE-GAIN	NONFOCAL	57	"C8orf34,C8orf59,C8orf89,CA1,CA13,CA2,CA3,CHMP4C,CRISPLD1,E2F5,EYA1,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,KCNB2,LACTB2,LRRCC1,LY96,MRPS28,MSC,NCOA2,PAG1,PEX2,PI15,PKIA,PMP2,PRDM14,RALYL,RDH10,RPL7,SBSPON,SLC10A5,SLCO5A1,SNX16,STAU2,STMN2,SULF1,TCEB1,TERF1,TMEM70,TPD52,TRAM1,TRPA1,UBE2W,XKR9,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AF.3913	8	70215106	78124523	2442	0.8354	LARGE-GAIN	NONFOCAL	28	"C8orf89,CRISPLD1,EYA1,GDAP1,HNF4G,JPH1,KCNB2,LACTB2,LY96,MSC,NCOA2,PEX2,PI15,PRDM14,RDH10,RPL7,SBSPON,SLCO5A1,STAU2,SULF1,TCEB1,TERF1,TMEM70,TRAM1,TRPA1,UBE2W,XKR9,ZFHX4"
TCGA.AA.3979	8	72749563	138624595	20122	1.1304	LARGE-GAIN	NONFOCAL	221	Too-Many
TCGA.G4.6306	8	73038309	146293413	22316	0.9287	LARGE-GAIN	NONFOCAL	317	Too-Many
TCGA.AZ.4684.01A	8	75757350	86035607	150	1.3003	LARGE-GAIN	NONFOCAL	27	"CHMP4C,CRISPLD1,FABP12,FABP4,FABP5,FABP9,HEY1,HNF4G,IL7,IMPA1,LRRCC1,MRPS28,PAG1,PEX2,PI15,PKIA,PMP2,RALYL,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.A6.6652	8	76542559	81701446	1261	0.972	LARGE-GAIN	NONFOCAL	11	"HEY1,IL7,MRPS28,PEX2,PKIA,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFHX4,ZNF704"
TCGA.4T.AA8H	8	76961840	146293413	21044	0.8463	LARGE-GAIN	NONFOCAL	301	Too-Many
TCGA.AA.3662	8	77736645	146293413	20866	0.8842	LARGE-GAIN	NONFOCAL	301	Too-Many
TCGA.AF.3913	8	78127570	86456594	1959	0.7801	LARGE-GAIN	NONFOCAL	28	"C8orf59,CA1,CA13,CA2,CA3,CHMP4C,E2F5,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,LRRCC1,MRPS28,PAG1,PKIA,PMP2,RALYL,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZNF704"
TCGA.DY.A1DC	8	78829442	88279241	2150	0.7135	LARGE-GAIN	NONFOCAL	36	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CHMP4C,CNBD1,CNGB3,CPNE3,E2F5,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,LRRCC1,MRPS28,PAG1,PKIA,PMP2,PSKH2,RALYL,RMDN1,SLC10A5,SLC7A13,SNX16,STMN2,TPD52,WWP1,ZBTB10,ZC2HC1A,ZFAND1,ZNF704"
TCGA.AG.A01Y	8	79195936	83758831	1121	1.0966	LARGE-GAIN	NONFOCAL	20	"CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,MRPS28,PAG1,PKIA,PMP2,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZNF704"
TCGA.A6.5666	8	79249421	82885454	897	0.6851	LARGE-GAIN	NONFOCAL	20	"CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,MRPS28,PAG1,PKIA,PMP2,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZNF704"
TCGA.AA.A02E.01A	8	80831173	139648911	1986	0.6999	LARGE-GAIN	NONFOCAL	198	Too-Many
TCGA.AG.3896	8	81476364	82921481	380	0.864	LARGE-GAIN	NONFOCAL	12	"CHMP4C,FABP12,FABP4,FABP5,FABP9,IMPA1,PAG1,PMP2,SLC10A5,SNX16,ZFAND1,ZNF704"
TCGA.A6.6652	8	83488194	87514089	835	0.9678	LARGE-GAIN	NONFOCAL	13	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,E2F5,LRRCC1,PSKH2,RALYL,RMDN1,SLC7A13,WWP1"
TCGA.AG.A01Y	8	84911231	118805480	8977	0.8336	LARGE-GAIN	NONFOCAL	120	Too-Many
TCGA.AA.3867	8	85694674	110972263	6864	0.8306	LARGE-GAIN	NONFOCAL	111	Too-Many
TCGA.AA.3851	8	86183669	146293413	18824	0.7277	LARGE-GAIN	NONFOCAL	275	Too-Many
TCGA.AZ.4684.01A	8	87081614	92407211	196	1.919	LARGE-GAIN	NONFOCAL	22	"ATP6V0D2,C8orf88,CALB1,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,LRRC69,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PSKH2,RIPK2,RMDN1,SLC26A7,SLC7A13,TMEM55A,TMEM64,WWP1"
TCGA.AA.3509.01A	8	87587980	92407211	140	1.0222	LARGE-GAIN	NONFOCAL	16	"C8orf88,CALB1,CNBD1,CNGB3,DCAF4L2,DECR1,LRRC69,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,RIPK2,SLC26A7,TMEM55A,TMEM64"
TCGA.A6.3808.01A	8	87587980	93029407	150	1.1204	LARGE-GAIN	NONFOCAL	17	"C8orf88,CALB1,CNBD1,CNGB3,DCAF4L2,DECR1,LRRC69,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,RIPK2,RUNX1T1,SLC26A7,TMEM55A,TMEM64"
TCGA.A6.5656	8	87852931	114990470	7241	0.7745	LARGE-GAIN	NONFOCAL	98	"ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,C8orf87,C8orf88,CALB1,CCNE2,CDH17,CNBD1,COX6C,CPQ,CSMD3,CTHRC1,DCAF13,DCAF4L2,DCSTAMP,DECR1,DPY19L4,DPYS,EBAG9,EIF3E,EMC2,ENY2,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,FZD6,GDF6,GEM,GRHL2,HRSP12,INTS8,KCNS2,KCNV1,KIAA1429,KLF10,LAPTM4B,LRP12,LRRC69,MATN2,MMP16,MTDH,MTERF3,NBN,NCALD,NDUFAF6,NECAB1,NIPAL2,NUDCD1,ODF1,OSGIN2,OSR2,OTUD6B,OXR1,PABPC1,PDP1,PKHD1L1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RIMS2,RIPK2,RNF19A,RPL30,RRM2B,RSPO2,RUNX1T1,SDC2,SLC25A32,SLC26A7,SNX31,SPAG1,STK3,SYBU,TMEM55A,TMEM64,TMEM67,TMEM74,TP53INP1,TRHR,TRIQK,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.DY.A1DC	8	88296343	106310304	4961	0.6998	LARGE-GAIN	NONFOCAL	82	"ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,C8orf87,C8orf88,CALB1,CCNE2,CDH17,CNBD1,COX6C,CPQ,CTHRC1,DCAF13,DCAF4L2,DCSTAMP,DECR1,DPY19L4,DPYS,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,FZD6,GDF6,GEM,GRHL2,HRSP12,INTS8,KCNS2,KIAA1429,KLF10,LAPTM4B,LRP12,LRRC69,MATN2,MMP16,MTDH,MTERF3,NBN,NCALD,NDUFAF6,NECAB1,NIPAL2,ODF1,OSGIN2,OSR2,OTUD6B,PABPC1,PDP1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RIMS2,RIPK2,RNF19A,RPL30,RRM2B,RUNX1T1,SDC2,SLC25A32,SLC26A7,SNX31,SPAG1,STK3,TMEM55A,TMEM64,TMEM67,TP53INP1,TRIQK,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZNF706"
TCGA.AG.3731	8	93783316	101825383	2291	0.6939	LARGE-GAIN	NONFOCAL	47	"ANKRD46,C8orf37,C8orf87,CCNE2,CDH17,COX6C,CPQ,DPY19L4,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,GDF6,GEM,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PABPC1,PDP1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RNF19A,RPL30,SDC2,SNX31,SPAG1,STK3,TMEM67,TP53INP1,TRIQK,TSPYL5,UQCRB,VPS13B"
TCGA.AA.3982	8	94513130	96474688	636	0.805	LARGE-GAIN	NONFOCAL	17	"C8orf37,CCNE2,CDH17,DPY19L4,ESRP1,FAM92A1,FSBP,GEM,INTS8,KIAA1429,NDUFAF6,PDP1,PLEKHF2,RAD54B,RBM12B,TMEM67,TP53INP1"
TCGA.AG.A016.01A	8	95529975	103300341	425	0.7428	LARGE-GAIN	NONFOCAL	43	"ANKRD46,C8orf37,CCNE2,COX6C,CPQ,DPY19L4,ERICH5,ESRP1,FBXO43,GDF6,GRHL2,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NCALD,NDUFAF6,NIPAL2,OSR2,PABPC1,PLEKHF2,POLR2K,POP1,PTDSS1,RGS22,RNF19A,RPL30,RRM2B,SDC2,SNX31,SPAG1,STK3,TP53INP1,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZNF706"
TCGA.AG.A02N	8	96572161	125089255	8425	0.7147	LARGE-GAIN	NONFOCAL	99	"AARD,ABRA,ANGPT1,ANKRD46,ANXA13,ATAD2,ATP6V1C1,AZIN1,BAALC,C8orf76,COL14A1,COLEC10,COX6C,CPQ,CSMD3,CTHRC1,DCAF13,DCSTAMP,DEPTOR,DERL1,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,ERICH5,EXT1,FAM83A,FAM91A1,FBXO32,FBXO43,FER1L6,FZD6,GDF6,GRHL2,HAS2,HRSP12,KCNS2,KCNV1,KLF10,KLHL38,LAPTM4B,LRP12,MAL2,MATN2,MED30,MRPL13,MTBP,MTDH,MTERF3,NCALD,NIPAL2,NOV,NUDCD1,ODF1,OSR2,OXR1,PABPC1,PKHD1L1,POLR2K,POP1,PTDSS1,RAD21,RGS22,RIMS2,RNF19A,RPL30,RRM2B,RSPO2,SAMD12,SDC2,SLC25A32,SLC30A8,SNTB1,SNX31,SPAG1,STK3,SYBU,TAF2,TBC1D31,TMEM74,TNFRSF11B,TRHR,TRPS1,TSPYL5,UBR5,UQCRB,UTP23,VPS13B,WDYHV1,YWHAZ,ZFPM2,ZHX1,ZHX1-C8orf76,ZHX2,ZNF706"
TCGA.AA.3982	8	98092536	99546680	508	0.757	LARGE-GAIN	NONFOCAL	12	"CPQ,ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,NIPAL2,POP1,RPL30,STK3,TSPYL5"
TCGA.AA.A00D.01A	8	98288797	100147196	71	0.8977	LARGE-GAIN	NONFOCAL	13	"ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,NIPAL2,OSR2,POP1,RPL30,STK3,TSPYL5,VPS13B"
TCGA.AG.3594	8	98727825	100046691	316	0.6847	LARGE-GAIN	NONFOCAL	12	"ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,NIPAL2,OSR2,POP1,RPL30,STK3,VPS13B"
TCGA.AZ.6608	8	98839816	103200930	1181	0.9377	LARGE-GAIN	NONFOCAL	24	"ANKRD46,COX6C,ERICH5,FBXO43,GRHL2,HRSP12,KCNS2,LAPTM4B,MATN2,NCALD,NIPAL2,OSR2,PABPC1,POLR2K,POP1,RGS22,RNF19A,RPL30,SNX31,SPAG1,STK3,VPS13B,YWHAZ,ZNF706"
TCGA.AG.A01N.01A	8	99142155	139707037	1405	0.8335	LARGE-GAIN	NONFOCAL	120	Too-Many
TCGA.D5.5541	8	99467205	112201258	3439	1.3605	LARGE-GAIN	NONFOCAL	46	"ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,COX6C,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,FBXO43,FZD6,GRHL2,KCNV1,KLF10,LRP12,NCALD,NUDCD1,ODF1,OSR2,OXR1,PABPC1,PKHD1L1,POLR2K,RGS22,RIMS2,RNF19A,RRM2B,RSPO2,SLC25A32,SNX31,SPAG1,STK3,SYBU,TMEM74,TRHR,UBR5,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AZ.4684.01A	8	100123314	103305793	209	1.7779	LARGE-GAIN	NONFOCAL	16	"ANKRD46,COX6C,FBXO43,GRHL2,NCALD,PABPC1,POLR2K,RGS22,RNF19A,RRM2B,SNX31,SPAG1,UBR5,VPS13B,YWHAZ,ZNF706"
TCGA.AA.3982	8	100848479	102754873	645	0.8621	LARGE-GAIN	NONFOCAL	14	"ANKRD46,COX6C,FBXO43,GRHL2,NCALD,PABPC1,POLR2K,RGS22,RNF19A,SNX31,SPAG1,VPS13B,YWHAZ,ZNF706"
TCGA.AG.3594	8	101565290	103992589	829	0.7541	LARGE-GAIN	NONFOCAL	12	"ANKRD46,AZIN1,GRHL2,KLF10,NCALD,ODF1,PABPC1,RRM2B,SNX31,UBR5,YWHAZ,ZNF706"
TCGA.AA.A00D.01A	8	102213817	104343522	114	0.7331	LARGE-GAIN	NONFOCAL	11	"ATP6V1C1,AZIN1,BAALC,FZD6,GRHL2,KLF10,NCALD,ODF1,RRM2B,UBR5,ZNF706"
TCGA.AG.3731	8	102294421	106166796	1218	0.6983	LARGE-GAIN	NONFOCAL	17	"ATP6V1C1,AZIN1,BAALC,CTHRC1,DCAF13,DCSTAMP,DPYS,FZD6,GRHL2,KLF10,LRP12,NCALD,ODF1,RIMS2,RRM2B,SLC25A32,UBR5"
TCGA.AG.A016.01A	8	103317264	142204092	1273	0.6849	LARGE-GAIN	NONFOCAL	106	Too-Many
TCGA.AZ.4684.01A	8	103335509	110587118	271	1.8039	LARGE-GAIN	NONFOCAL	28	"ABRA,ANGPT1,ATP6V1C1,AZIN1,BAALC,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,FZD6,KLF10,LRP12,NUDCD1,ODF1,OXR1,PKHD1L1,RIMS2,RSPO2,SLC25A32,SYBU,TMEM74,TRHR,UBR5,ZFPM2"
TCGA.AZ.4308	8	103817105	113430418	2586	0.727	LARGE-GAIN	NONFOCAL	27	"ABRA,ANGPT1,ATP6V1C1,AZIN1,BAALC,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,FZD6,KCNV1,LRP12,NUDCD1,OXR1,PKHD1L1,RIMS2,RSPO2,SLC25A32,SYBU,TMEM74,TRHR,ZFPM2"
TCGA.AA.3509.01A	8	104433156	118542911	328	0.9885	LARGE-GAIN	NONFOCAL	28	"AARD,ABRA,ANGPT1,CSMD3,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EIF3H,EMC2,ENY2,KCNV1,LRP12,MED30,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RSPO2,SLC30A8,SYBU,TMEM74,TRHR,TRPS1,UTP23,ZFPM2"
TCGA.G4.6299	8	104718241	127187160	6780	0.7018	LARGE-GAIN	NONFOCAL	67	"AARD,ABRA,ANGPT1,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DCSTAMP,DEPTOR,DERL1,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KCNV1,KIAA0196,KLHL38,LRP12,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RNF139,RSPO2,SAMD12,SLC30A8,SNTB1,SQLE,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZFPM2,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.A6.3807	8	105663852	110691428	1500	0.9278	LARGE-GAIN	NONFOCAL	14	"ABRA,ANGPT1,EBAG9,EIF3E,EMC2,ENY2,NUDCD1,OXR1,PKHD1L1,RSPO2,SYBU,TMEM74,TRHR,ZFPM2"
TCGA.DY.A1DC	8	107509636	112165198	1241	0.693	LARGE-GAIN	NONFOCAL	14	"ABRA,ANGPT1,EBAG9,EIF3E,EMC2,ENY2,KCNV1,NUDCD1,OXR1,PKHD1L1,RSPO2,SYBU,TMEM74,TRHR"
TCGA.CM.4752	8	107872546	146293413	12943	0.6823	LARGE-GAIN	NONFOCAL	179	Too-Many
TCGA.NH.A6GB	8	112184058	146293413	11803	0.718	LARGE-GAIN	NONFOCAL	167	Too-Many
TCGA.AZ.4684.01A	8	113650907	121275090	187	1.7274	LARGE-GAIN	NONFOCAL	19	"AARD,COL14A1,COLEC10,CSMD3,DEPTOR,DSCC1,EIF3H,ENPP2,EXT1,MAL2,MED30,NOV,RAD21,SAMD12,SLC30A8,TAF2,TNFRSF11B,TRPS1,UTP23"
TCGA.D5.5541	8	115027829	130088604	5355	1.4213	LARGE-GAIN	NONFOCAL	50	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3956	8	116262880	132207341	5787	0.7082	LARGE-GAIN	NONFOCAL	54	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.DC.6154	8	116271574	146293413	10822	0.6923	LARGE-GAIN	NONFOCAL	166	Too-Many
TCGA.AA.3867	8	116849718	146293413	10700	0.8894	LARGE-GAIN	NONFOCAL	165	Too-Many
TCGA.CM.5864	8	116853987	129622022	4716	0.7097	LARGE-GAIN	NONFOCAL	49	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.DY.A1DC	8	116902469	128054892	3978	0.7019	LARGE-GAIN	NONFOCAL	47	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AF.6655	8	117157762	125755749	3047	0.8087	LARGE-GAIN	NONFOCAL	41	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AZ.6606	8	117157762	138656899	8374	0.7481	LARGE-GAIN	NONFOCAL	67	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EFR3A,EIF3H,ENPP2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,HHLA1,KCNQ3,KHDRBS3,KIAA0196,KLHL38,LRRC6,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDRG1,NDUFB9,NOV,NSMCE2,OC90,PHF20L1,POU5F1B,RAD21,RNF139,SAMD12,SLA,SLC30A8,SNTB1,SQLE,ST3GAL1,TAF2,TATDN1,TBC1D31,TG,TMEM65,TMEM71,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,WISP1,ZFAT,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.A6.5656	8	117972194	146293413	10358	0.7742	LARGE-GAIN	NONFOCAL	161	Too-Many
TCGA.CK.4952.01A	8	118019617	146250220	1451	1.2574	LARGE-GAIN	NONFOCAL	160	Too-Many
TCGA.AG.A01Y	8	118808565	122361969	1281	1.245	LARGE-GAIN	NONFOCAL	14	"COL14A1,COLEC10,DEPTOR,DSCC1,ENPP2,EXT1,MAL2,MRPL13,MTBP,NOV,SAMD12,SNTB1,TAF2,TNFRSF11B"
TCGA.AZ.4684.01A	8	121551075	129021094	268	1.7028	LARGE-GAIN	NONFOCAL	30	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MTSS1,MYC,NDUFB9,NSMCE2,POU5F1B,RNF139,SNTB1,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3488	8	122139551	128547559	2396	0.8445	LARGE-GAIN	NONFOCAL	28	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MTSS1,NDUFB9,NSMCE2,POU5F1B,RNF139,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3664	8	122215914	146293413	8874	0.8633	LARGE-GAIN	NONFOCAL	145	Too-Many
TCGA.D5.6538	8	122832147	146293413	8636	0.7997	LARGE-GAIN	NONFOCAL	144	Too-Many
TCGA.AA.3982	8	123558249	124810319	459	1.0071	LARGE-GAIN	NONFOCAL	13	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FAM91A1,FBXO32,KLHL38,TBC1D31,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AA.3941	8	123806239	124723779	333	0.8	LARGE-GAIN	NONFOCAL	12	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FBXO32,KLHL38,TBC1D31,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.A6.2677	8	123923099	126645346	932	0.6804	LARGE-GAIN	NONFOCAL	25	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FAM91A1,FBXO32,FER1L6,KIAA0196,KLHL38,MTSS1,NDUFB9,NSMCE2,RNF139,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.A00D.01A	8	124031383	124693431	84	0.9081	LARGE-GAIN	NONFOCAL	11	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FBXO32,KLHL38,TBC1D31,WDYHV1,ZHX1,ZHX1-C8orf76"
TCGA.A6.3807	8	124127928	127250956	1126	1.1492	LARGE-GAIN	NONFOCAL	23	"ANXA13,ATAD2,C8orf76,FAM83A,FAM91A1,FBXO32,FER1L6,KIAA0196,KLHL38,MTSS1,NDUFB9,NSMCE2,RNF139,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZNF572"
TCGA.AG.A01Y	8	124167266	125992713	682	0.7919	LARGE-GAIN	NONFOCAL	18	"ANXA13,ATAD2,C8orf76,FAM83A,FAM91A1,FBXO32,FER1L6,KLHL38,MTSS1,NDUFB9,RNF139,TATDN1,TMEM65,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZNF572"
TCGA.AA.3982	8	124927710	126779760	690	1.0019	LARGE-GAIN	NONFOCAL	12	"FER1L6,KIAA0196,MTSS1,NDUFB9,NSMCE2,RNF139,SQLE,TATDN1,TMEM65,TRIB1,TRMT12,ZNF572"
TCGA.AA.3967.01A	8	125061800	126163396	99	2.5335	LARGE-GAIN	NONFOCAL	11	"FER1L6,KIAA0196,MTSS1,NDUFB9,NSMCE2,RNF139,SQLE,TATDN1,TMEM65,TRMT12,ZNF572"
TCGA.AG.A02N	8	125111901	146293413	7820	0.7165	LARGE-GAIN	NONFOCAL	131	Too-Many
TCGA.AF.6655	8	125763883	139052034	5510	0.7796	LARGE-GAIN	NONFOCAL	26	"ADCY8,ASAP1,EFR3A,FAM49B,FAM84B,GSDMC,HHLA1,KCNQ3,KHDRBS3,KIAA0196,LRRC6,MYC,NDRG1,NSMCE2,OC90,PHF20L1,POU5F1B,SLA,SQLE,ST3GAL1,TG,TMEM71,TRIB1,WISP1,ZFAT,ZNF572"
TCGA.AG.A01J.01A	8	126378971	139648911	308	1.0324	LARGE-GAIN	NONFOCAL	25	"ADCY8,ASAP1,COL22A1,EFR3A,FAM135B,FAM49B,FAM84B,GSDMC,HHLA1,KCNQ3,KHDRBS3,LRRC6,MYC,NDRG1,NSMCE2,OC90,PHF20L1,POU5F1B,SLA,ST3GAL1,TG,TMEM71,TRIB1,WISP1,ZFAT"
TCGA.AA.A02J.01A	8	126378971	146279416	563	0.8659	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.AF.3911	8	126546196	146293413	7324	0.7038	LARGE-GAIN	NONFOCAL	119	Too-Many
TCGA.DM.A1D6	8	128137667	135336798	3071	2.0518	LARGE-GAIN	NONFOCAL	18	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC,HHLA1,KCNQ3,LRRC6,MYC,NDRG1,OC90,PHF20L1,POU5F1B,SLA,ST3GAL1,TG,TMEM71,WISP1"
TCGA.AA.3488	8	128601201	146060984	6435	0.8313	LARGE-GAIN	NONFOCAL	113	Too-Many
TCGA.DM.A0XF	8	128901991	146211594	6357	0.6997	LARGE-GAIN	NONFOCAL	115	Too-Many
TCGA.AG.A01Y	8	129000883	142250950	5581	0.7472	LARGE-GAIN	NONFOCAL	27	"ADCY8,AGO2,ASAP1,CHRAC1,COL22A1,DENND3,EFR3A,FAM135B,FAM49B,GSDMC,HHLA1,KCNK9,KCNQ3,KHDRBS3,LRRC6,NDRG1,OC90,PHF20L1,PTK2,SLA,SLC45A4,ST3GAL1,TG,TMEM71,TRAPPC9,WISP1,ZFAT"
TCGA.CM.5864	8	129632643	146293413	5968	0.7099	LARGE-GAIN	NONFOCAL	116	Too-Many
TCGA.AA.3956	8	132230062	138486698	2714	0.6922	LARGE-GAIN	NONFOCAL	14	"EFR3A,HHLA1,KCNQ3,KHDRBS3,LRRC6,NDRG1,OC90,PHF20L1,SLA,ST3GAL1,TG,TMEM71,WISP1,ZFAT"
TCGA.AA.3956	8	138493982	146203345	2319	0.8064	LARGE-GAIN	NONFOCAL	97	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3870	8	138612382	146293413	2262	0.6918	LARGE-GAIN	NONFOCAL	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AF.6655	8	139175181	146293413	2001	0.7522	LARGE-GAIN	NONFOCAL	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3979	8	139260555	146293413	1944	1.0892	LARGE-GAIN	NONFOCAL	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.A01J.01A	8	139658799	146279416	312	0.744	LARGE-GAIN	NONFOCAL	97	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3982	8	140298089	146203411	1400	1.1362	LARGE-GAIN	NONFOCAL	95	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3941	8	141838359	143923249	542	0.8559	LARGE-GAIN	NONFOCAL	18	"ADGRB1,ARC,DENND3,GML,GPR20,JRK,LY6D,LY6K,LYNX1,LYPD2,MROH5,PSCA,PTK2,PTP4A3,SLC45A4,SLURP1,THEM6,TSNARE1"
TCGA.D5.5541	8	142290285	146280470	723	0.8676	LARGE-GAIN	NONFOCAL	89	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AF.3913	8	143189910	146293413	441	0.7566	LARGE-GAIN	NONFOCAL	86	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3494	8	143190002	146293413	441	0.8772	LARGE-GAIN	NONFOCAL	86	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3941	8	143928955	146199113	275	0.9417	LARGE-GAIN	NONFOCAL	73	"ADCK5,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,LY6E,LY6H,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TOP1MT,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.A016.01A	8	144102286	144735016	39	0.9809	LARGE-GAIN	NONFOCAL	19	"C8orf31,EEF1D,GLI4,GPIHBP1,GSDMD,LY6E,LY6H,MAFA,MROH6,NAPRT,PYCRL,RHPN1,TIGD5,TOP1MT,TSTA3,ZC3H3,ZFP41,ZNF623,ZNF696"
TCGA.AA.3811	8	144506436	145702006	116	0.8017	LARGE-GAIN	NONFOCAL	46	"ADCK5,BOP1,CCDC166,CPSF1,CYC1,CYHR1,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GRINA,GSDMD,HGH1,HSF1,KIFC2,MAF1,MAFA,MAPK15,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PUF60,PYCRL,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TSTA3,VPS28,ZC3H3,ZNF623,ZNF707"
TCGA.AM.5820	8	144774088	145744428	71	0.8164	LARGE-GAIN	NONFOCAL	41	"ADCK5,BOP1,CCDC166,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,MAF1,MAPK15,MFSD3,MROH1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,RECQL4,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28,ZNF707"
TCGA.AG.A016.01A	8	144803128	146279416	137	0.9794	LARGE-GAIN	NONFOCAL	51	"ADCK5,ARHGAP39,BOP1,C8orf33,C8orf82,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAPK15,MFSD3,MROH1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,RECQL4,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.3727	8	144868996	145702006	60	0.7909	LARGE-GAIN	NONFOCAL	32	"ADCK5,BOP1,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FBXL6,FOXH1,GPAA1,GRINA,HGH1,HSF1,KIFC2,MAF1,MROH1,NRBP2,OPLAH,PARP10,PLEC,PUF60,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28"
TCGA.AG.A01W.01A	8	144880053	145233680	77	0.9884	LARGE-GAIN	NONFOCAL	16	"CYC1,EPPK1,EXOSC4,GPAA1,GRINA,HGH1,MAF1,MROH1,NRBP2,OPLAH,PARP10,PLEC,PUF60,SCRIB,SHARPIN,SPATC1"
TCGA.AA.A00Z.01A	8	144940762	146156094	29	1.5287	LARGE-GAIN	NONFOCAL	45	"ADCK5,ARHGAP39,BOP1,C8orf82,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MFSD3,MROH1,OPLAH,PARP10,PLEC,PPP1R16A,RECQL4,RPL8,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.3605.01A	8	145065823	145724088	24	1.6227	LARGE-GAIN	NONFOCAL	27	"ADCK5,BOP1,CPSF1,CYC1,CYHR1,DGAT1,EXOSC4,FBXL6,FOXH1,GPAA1,GRINA,HGH1,HSF1,KIFC2,MAF1,MROH1,OPLAH,PPP1R16A,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28"
TCGA.AG.A01W.01A	8	145626545	145801668	53	0.9325	LARGE-GAIN	NONFOCAL	15	"ARHGAP39,C8orf82,CPSF1,CYHR1,FOXH1,GPT,KIFC2,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,SLC39A4,TONSL,VPS28"
TCGA.AG.A014.01A	8	145746323	146279416	36	0.7004	LARGE-GAIN	NONFOCAL	13	"ARHGAP39,C8orf33,C8orf82,COMMD5,LRRC14,LRRC24,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.NH.A6GC	9	192128	7535871	4240	0.754	LARGE-GAIN	NONFOCAL	36	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TPD52L3,UHRF2,VLDLR"
TCGA.AF.6655	9	192128	16108050	8197	0.8114	LARGE-GAIN	NONFOCAL	49	"AK3,C9orf66,CCDC171,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.F4.6704	9	192128	22925115	11191	0.87	LARGE-GAIN	NONFOCAL	86	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.3592	9	192128	28168156	13309	0.8158	LARGE-GAIN	NONFOCAL	100	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LINGO2,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.3612	9	192128	69492990	16637	1.1998	LARGE-GAIN	NONFOCAL	211	Too-Many
TCGA.AG.3881	9	192128	73120031	17568	0.8633	LARGE-GAIN	NONFOCAL	228	Too-Many
TCGA.DC.4745	9	277988	141071474	40558	0.708	LARGE-GAIN	NONFOCAL	750	Too-Many
TCGA.AG.3594	9	4214039	10657331	3266	0.9424	LARGE-GAIN	NONFOCAL	27	"AK3,CD274,CDC37L1,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RIC1,RLN1,RLN2,SLC1A1,SPATA6L,TMEM261,TPD52L3,UHRF2"
TCGA.AF.6655	9	17650656	21352376	1706	0.837	LARGE-GAIN	NONFOCAL	25	"ACER2,ADAMTSL1,DENND4C,FOCAD,HACD4,HAUS6,IFNA10,IFNA14,IFNA16,IFNA17,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNB1,IFNW1,KLHL9,MLLT3,PLIN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2"
TCGA.A6.2671	9	18299445	21894494	1532	0.8768	LARGE-GAIN	NONFOCAL	30	"ACER2,ADAMTSL1,DENND4C,FOCAD,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MLLT3,MTAP,PLIN2,RPS6,RRAGA,SAXO1,SLC24A2"
TCGA.CK.5914.01A	9	19516112	21304755	88	0.694	LARGE-GAIN	NONFOCAL	14	"FOCAD,HACD4,IFNA10,IFNA14,IFNA16,IFNA17,IFNA21,IFNA4,IFNA5,IFNA7,IFNB1,IFNW1,MLLT3,SLC24A2"
TCGA.AA.3861.01A	9	21165991	21802664	25	1.1668	LARGE-GAIN	NONFOCAL	16	"IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNE,KLHL9,MTAP"
TCGA.AA.3862.01A	9	21165991	21802664	25	1.1406	LARGE-GAIN	NONFOCAL	16	"IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNE,KLHL9,MTAP"
TCGA.AF.6655	9	22547507	68176151	5627	0.7917	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.F4.6704	9	34925657	36077870	278	1.021	LARGE-GAIN	NONFOCAL	32	"ARHGEF39,C9orf131,CA9,CCDC107,CD72,CREB3,DNAJB5,FAM166B,FAM214B,FAM221B,FANCG,GBA2,HINT2,HRCT1,KIAA1045,MSMP,NPR2,OR13J1,OR2S2,PIGO,RECK,RGP1,RUSC2,SIT1,SPAG8,STOML2,TESK1,TLN1,TMEM8B,TPM2,UNC13B,VCP"
TCGA.AA.3861.01A	9	38577042	71006478	71	1.5112	LARGE-GAIN	NONFOCAL	21	"ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,ZNF658"
TCGA.AA.3862.01A	9	38611190	71007188	68	1.8645	LARGE-GAIN	NONFOCAL	21	"ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,ZNF658"
TCGA.AZ.4684.01A	9	43627218	70862489	34	0.8724	LARGE-GAIN	NONFOCAL	13	"ANKRD20A1,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3B,FOXD4L4,FOXD4L5,FOXD4L6,SPATA31A5,SPATA31A6,SPATA31A7"
TCGA.CM.4746	9	90046483	92340882	872	0.895	LARGE-GAIN	NONFOCAL	16	"C9orf47,CDK20,CKS2,CTSL,DAPK1,GADD45G,LOC286238,NXNL2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.AA.A010.01A	9	96392207	98221844	113	0.8135	LARGE-GAIN	NONFOCAL	11	"BARX1,C9orf3,FANCC,FBP1,FBP2,HIATL1,NUTM2F,PHF2,PTCH1,PTPDC1,ZNF169"
TCGA.DM.A28A	9	97545746	100780062	894	0.7384	LARGE-GAIN	NONFOCAL	25	"AAED1,ANP32B,C9orf156,C9orf3,CCDC180,CDC14B,CTSV,ERCC6L2,FANCC,FOXE1,HABP4,HEMGN,HSD17B3,LOC158434,NCBP1,NUTM2G,PTCH1,SLC35D2,TDRD7,TMOD1,TSTD2,XPA,ZNF367,ZNF510,ZNF782"
TCGA.AA.3844	9	115946169	116489193	179	0.6922	LARGE-GAIN	NONFOCAL	12	"ALAD,BSPRY,C9orf43,CDC26,FKBP15,HDHD3,POLE3,PRPF4,RGS3,RNF183,SLC31A1,WDR31"
TCGA.A6.3808.01A	9	117113087	123313038	172	0.9098	LARGE-GAIN	NONFOCAL	15	"AKNA,ASTN2,ATP6V1G1,BRINP1,C9orf91,CDK5RAP2,DEC1,DFNB31,LOC100505478,PAPPA,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AG.3909.01A	9	117185542	123313038	150	0.7169	LARGE-GAIN	NONFOCAL	14	"ASTN2,ATP6V1G1,BRINP1,C9orf91,CDK5RAP2,DEC1,DFNB31,LOC100505478,PAPPA,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.CK.5914.01A	9	117389128	123162988	109	0.9664	LARGE-GAIN	NONFOCAL	12	"ASTN2,BRINP1,C9orf91,CDK5RAP2,DEC1,LOC100505478,PAPPA,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AA.A00N.01A	9	117396000	123222799	121	1.155	LARGE-GAIN	NONFOCAL	12	"ASTN2,BRINP1,C9orf91,CDK5RAP2,DEC1,LOC100505478,PAPPA,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.NH.A8F8	9	124864384	125542512	270	0.8139	LARGE-GAIN	NONFOCAL	18	"LHX6,MORN5,MRRF,NDUFA8,OR1B1,OR1J1,OR1J2,OR1J4,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,PTGS1,RBM18"
TCGA.CK.5914.01A	9	125042671	125562354	31	0.6995	LARGE-GAIN	NONFOCAL	15	"MRRF,OR1B1,OR1J1,OR1J2,OR1J4,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PTGS1"
TCGA.AA.A00N.01A	9	125133310	125588845	28	0.6956	LARGE-GAIN	NONFOCAL	16	"OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1"
TCGA.AA.3861.01A	9	125141005	125616756	30	0.7343	LARGE-GAIN	NONFOCAL	17	"OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1,RC3H2"
TCGA.AA.A00Z.01A	9	128305291	130524587	15	1.5467	LARGE-GAIN	NONFOCAL	20	"ANGPTL2,C9orf117,FAM129B,GARNL3,LMX1B,LRSAM1,MAPKAP1,MVB12B,PBX3,PTRH1,RALGPS1,RPL12,SH2D3C,SLC2A8,STXBP1,TOR2A,TTC16,ZBTB34,ZBTB43,ZNF79"
TCGA.AG.3605.01A	9	130147258	130524587	12	1.7867	LARGE-GAIN	NONFOCAL	12	"C9orf117,FAM129B,GARNL3,LRSAM1,PTRH1,RPL12,SH2D3C,SLC2A8,STXBP1,TOR2A,TTC16,ZNF79"
TCGA.AG.3605.01A	9	135201734	139566661	30	1.7947	LARGE-GAIN	NONFOCAL	68	"ABO,ADAMTS13,ADAMTSL2,AK8,BARHL1,BRD3,C9orf116,C9orf163,C9orf171,C9orf62,C9orf69,C9orf9,CACFD1,CAMSAP1,CARD9,CEL,COL5A1,DBH,DDX31,DNLZ,EGFL7,FAM163B,FCN1,FCN2,GBGT1,GFI1B,GLT6D1,GPSM1,GTF3C4,GTF3C5,INPP5E,KCNT1,LCN1,LCN9,LHX3,MED22,MRPS2,NACC2,NOTCH1,OBP2A,OBP2B,OLFM1,PAEP,PMPCA,PPP1R26,QSOX2,RALGDS,REXO4,RPL7A,RXRA,SARDH,SDCCAG3,SEC16A,SETX,SLC2A6,SNAPC4,SOHLH1,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,TSC1,TTF1,UBAC1,VAV2,WDR5"
TCGA.AA.A00Z.01A	9	135204589	139566341	27	1.8165	LARGE-GAIN	NONFOCAL	68	"ABO,ADAMTS13,ADAMTSL2,AK8,BARHL1,BRD3,C9orf116,C9orf163,C9orf171,C9orf62,C9orf69,C9orf9,CACFD1,CAMSAP1,CARD9,CEL,COL5A1,DBH,DDX31,DNLZ,EGFL7,FAM163B,FCN1,FCN2,GBGT1,GFI1B,GLT6D1,GPSM1,GTF3C4,GTF3C5,INPP5E,KCNT1,LCN1,LCN9,LHX3,MED22,MRPS2,NACC2,NOTCH1,OBP2A,OBP2B,OLFM1,PAEP,PMPCA,PPP1R26,QSOX2,RALGDS,REXO4,RPL7A,RXRA,SARDH,SDCCAG3,SEC16A,SETX,SLC2A6,SNAPC4,SOHLH1,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,TSC1,TTF1,UBAC1,VAV2,WDR5"
TCGA.AA.3872	9	137413910	139269337	573	0.7121	LARGE-GAIN	NONFOCAL	24	"C9orf116,C9orf62,C9orf69,CAMSAP1,CARD9,COL5A1,DNLZ,FCN1,FCN2,GLT6D1,GPSM1,KCNT1,LCN1,LCN9,LHX3,MRPS2,NACC2,OBP2A,OLFM1,PAEP,PPP1R26,QSOX2,SOHLH1,UBAC1"
TCGA.AM.5820	9	138865611	139376598	89	0.713	LARGE-GAIN	NONFOCAL	12	"C9orf69,CARD9,DNLZ,GPSM1,INPP5E,LHX3,NACC2,PMPCA,QSOX2,SDCCAG3,SEC16A,SNAPC4"
TCGA.AA.3844	9	138880742	139518166	102	0.8629	LARGE-GAIN	NONFOCAL	14	"C9orf163,C9orf69,CARD9,DNLZ,GPSM1,INPP5E,LHX3,NACC2,NOTCH1,PMPCA,QSOX2,SDCCAG3,SEC16A,SNAPC4"
TCGA.AA.3872	9	139289824	140446805	105	0.9471	LARGE-GAIN	NONFOCAL	62	"ABCA2,AGPAT2,ANAPC2,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CCDC183,CLIC3,CYSRT1,DPP7,EDF1,EGFL7,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1"
TCGA.AM.5820	9	139626323	140466815	57	0.6806	LARGE-GAIN	NONFOCAL	53	"ABCA2,ANAPC2,C8G,C9orf139,C9orf142,C9orf172,C9orf173,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,ENTPD2,ENTPD8,EXD3,FAM166A,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1"
TCGA.AA.3844	9	139662395	140760552	121	0.772	LARGE-GAIN	NONFOCAL	52	"ABCA2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf172,C9orf173,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FBXW5,FUT7,GRIN1,LCN12,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AA.3667	10	135655	5446793	2681	0.6873	LARGE-GAIN	NONFOCAL	18	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AA.A02K.01A	10	860656	6552906	293	0.7847	LARGE-GAIN	NONFOCAL	29	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,TUBAL3,UCN3,WDR37"
TCGA.AA.A02K.01A	10	11047281	16562428	336	0.86	LARGE-GAIN	NONFOCAL	35	"ACBD7,BEND7,C10orf111,C1QL3,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FRMD4A,HSPA14,ITGA8,MCM10,MEIG1,NMT2,NUDT5,OLAH,OPTN,PHYH,PROSER2,PRPF18,PTER,RPP38,SEC61A2,SEPHS1,SUV39H2,UCMA,UPF2,USP6NL"
TCGA.AA.A02K.01A	10	43127334	47758778	169	0.7614	LARGE-GAIN	NONFOCAL	34	"AGAP4,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FAM25C,FAM25G,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.AA.3861.01A	10	46146964	49617862	100	0.9165	LARGE-GAIN	NONFOCAL	20	"AGAP4,AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM21C,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,GPRIN2,MAPK8,NPY4R,PTPN20,RBP3,SYT15,ZFAND4,ZNF488"
TCGA.G4.6299	10	46210750	47703612	82	0.8249	LARGE-GAIN	NONFOCAL	12	"AGAP4,AGAP9,ANTXRL,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15"
TCGA.AA.A00N.01A	10	60272874	64000841	153	0.6973	LARGE-GAIN	NONFOCAL	13	"ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,FAM13C,MRLN,PHYHIPL,RHOBTB1,RTKN2,SLC16A9,TMEM26"
TCGA.AG.A020	10	67964462	71320942	971	0.9201	LARGE-GAIN	NONFOCAL	25	"ATOH7,CCAR1,CTNNA3,DDX21,DDX50,DNA2,DNAJC12,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,LRRTM3,MYPN,PBLD,RUFY2,SIRT1,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TSPAN15,VPS26A"
TCGA.G4.6299	10	69389217	74182399	1695	0.8877	LARGE-GAIN	NONFOCAL	55	"ADAMTS14,AIFM2,ANAPC16,ASCC1,ATOH7,C10orf105,C10orf35,C10orf54,CCAR1,CDH23,CHST3,COL13A1,CTNNA3,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC12,EIF4EBP2,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,LRRC20,MICU1,MYPN,NEUROG3,NODAL,NPFFR1,PALD1,PBLD,PCBD1,PPA1,PRF1,PSAP,RUFY2,SAR1A,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,VPS26A"
TCGA.AG.A020	10	73445706	76574136	516	1.3525	LARGE-GAIN	NONFOCAL	39	"ADK,AGAP5,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf105,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,DDIT4,DNAJB12,DNAJC9,ECD,FAM149B1,FUT11,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,PPP3CB,PSAP,SEC24C,SPOCK2,SYNPO2L,USP54,VCL,ZSWIM8"
TCGA.AA.A01Q.01A	10	74114561	75525188	142	0.7846	LARGE-GAIN	NONFOCAL	20	"AGAP5,ANXA7,CFAP70,DNAJB12,DNAJC9,ECD,FAM149B1,MCU,MICU1,MRPS16,MSS51,MYOZ1,NUDT13,OIT3,P4HA1,PLA2G12B,PPP3CB,SEC24C,SYNPO2L,USP54"
TCGA.DM.A285	10	75101689	78857055	968	1.2428	LARGE-GAIN	NONFOCAL	28	"ADK,AGAP5,ANXA7,AP3M1,C10orf11,C10orf55,CAMK2G,CFAP70,CHCHD1,COMTD1,DUPD1,DUSP13,FUT11,KAT6B,KCNMA1,MSS51,MYOZ1,NDST2,PLAU,PPP3CB,SAMD8,SEC24C,SYNPO2L,USP54,VCL,VDAC2,ZNF503,ZSWIM8"
TCGA.AA.3952	10	75934508	79560802	1215	0.7877	LARGE-GAIN	NONFOCAL	11	"ADK,C10orf11,COMTD1,DLG5,DUPD1,DUSP13,KAT6B,KCNMA1,SAMD8,VDAC2,ZNF503"
TCGA.AG.3881	10	76099556	80052506	1367	0.8286	LARGE-GAIN	NONFOCAL	13	"ADK,C10orf11,COMTD1,DLG5,DUPD1,DUSP13,KAT6B,KCNMA1,POLR3A,RPS24,SAMD8,VDAC2,ZNF503"
TCGA.AG.A020	10	76576798	83481061	2526	1.0988	LARGE-GAIN	NONFOCAL	29	"ANXA11,C10orf11,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,KAT6B,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,VDAC2,ZCCHC24,ZMIZ1,ZNF503"
TCGA.DM.A285	10	78864093	86206700	2851	0.8399	LARGE-GAIN	NONFOCAL	29	"ANXA11,C10orf99,CCSER2,CDHR1,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,GHITM,KCNMA1,LRIT1,LRIT2,MAT1A,NRG3,NUTM2B,PLAC9,POLR3A,PPIF,RGR,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.AA.3952	10	79565528	84802291	1955	1.6908	LARGE-GAIN	NONFOCAL	21	"ANXA11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,MAT1A,NRG3,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.AG.3881	10	80937796	82650613	503	1.9818	LARGE-GAIN	NONFOCAL	17	"ANXA11,DYDC1,DYDC2,EIF5AL1,FAM213A,MAT1A,NUTM2B,PLAC9,PPIF,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.AA.3862.01A	10	88492587	89268042	51	1.006	LARGE-GAIN	NONFOCAL	11	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,LDB3,MINPP1,MMRN2,NUTM2A,SNCG"
TCGA.AG.A01W.01A	10	133768254	135190839	203	0.7144	LARGE-GAIN	NONFOCAL	22	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,NKX6-2,PPP2R2D,PRAP1,PWWP2B,STK32C,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AM.5820	10	133942778	135190569	226	0.7076	LARGE-GAIN	NONFOCAL	20	"ADAM8,ADGRA1,C10orf91,CALY,CFAP46,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,NKX6-2,PRAP1,PWWP2B,STK32C,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A00Z.01A	11	199320	1265478	28	1.6081	LARGE-GAIN	NONFOCAL	47	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,ODF3,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AG.3605.01A	11	199320	1265478	29	0.9829	LARGE-GAIN	NONFOCAL	47	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,ODF3,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.G4.6314	11	2602795	6371907	1536	0.6986	LARGE-GAIN	NONFOCAL	92	"ART1,ART5,C11orf40,C11orf42,CARS,CCKBR,CDKN1C,CHRNA10,CNGA4,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,KCNQ1,MMP26,MRGPRE,MRGPRG,NAP1L4,NUP98,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B4,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,OSBPL5,PGAP2,PHLDA2,PRKCDBP,RHOG,RRM1,SLC22A18,SLC22A18AS,STIM1,TRIM21,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL,ZNF195"
TCGA.AA.A00N.01A	11	4406488	5079871	48	1.1419	LARGE-GAIN	NONFOCAL	24	"C11orf40,MMP26,OR51A2,OR51A4,OR51A7,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51L1,OR51S1,OR51T1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM68"
TCGA.AA.A00N.01A	11	6661851	7081073	30	0.7593	LARGE-GAIN	NONFOCAL	13	"DCHS1,MRPL17,NLRP14,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR6A2,ZNF214,ZNF215"
TCGA.A6.A56B	11	7610974	9124331	594	0.7765	LARGE-GAIN	NONFOCAL	22	"AKIP1,ASCL3,C11orf16,CYB5R2,EIF3F,LMO1,NLRP10,NRIP3,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,PPFIBP2,RIC3,RPL27A,SCUBE2,ST5,STK33,TMEM9B,TRIM66,TUB"
TCGA.A6.A56B	11	9398353	12739052	1591	0.7811	LARGE-GAIN	NONFOCAL	22	"ADM,AMPD3,CSNK2A3,CTR9,DKK3,EIF4G2,GALNT18,IPO7,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,PARVA,RNF141,SBF2,SWAP70,TEAD1,USP47,WEE1,ZBED5,ZNF143"
TCGA.A6.A56B	11	12747921	36633566	8779	1.0527	LARGE-GAIN	NONFOCAL	123	Too-Many
TCGA.DC.6160.01A	11	18556788	24710174	233	0.7677	LARGE-GAIN	NONFOCAL	23	"ANO5,CCDC179,CSRP3,DBX1,E2F8,FANCF,GAS2,HTATIP2,IGSF22,LUZP2,MRGPRX1,MRGPRX2,NAV2,NELL1,PRMT3,PTPN5,SLC17A6,SLC6A5,SPTY2D1,SVIP,TMEM86A,UEVLD,ZDHHC13"
TCGA.A6.A56B	11	44250280	46221426	799	0.995	LARGE-GAIN	NONFOCAL	15	"ALX4,C11orf94,CD82,CHST1,CRY2,EXT2,GYLTL1B,MAPK8IP1,PEX16,PHF21A,PRDM11,SLC35C1,SYT13,TP53I11,TSPAN18"
TCGA.D5.6923	11	51205140	57213060	670	0.7736	LARGE-GAIN	NONFOCAL	59	"APLNR,LRRC55,OR10AG1,OR4A15,OR4A16,OR4A5,OR4C11,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,P2RX3,PRG2,PRG3,SLC43A3,SSRP1,TNKS1BP1,TRIM48,TRIM51"
TCGA.AA.3861.01A	11	55656365	56949408	39	0.9611	LARGE-GAIN	NONFOCAL	35	"LRRC55,OR10AG1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5F1,OR5I1,OR5J2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM51"
TCGA.AA.3862.01A	11	55657367	56185344	24	0.7993	LARGE-GAIN	NONFOCAL	22	"OR10AG1,OR5AS1,OR5F1,OR5I1,OR5J2,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,TRIM51"
TCGA.AA.A00N.01A	11	55681132	57004239	41	0.6842	LARGE-GAIN	NONFOCAL	35	"APLNR,LRRC55,OR10AG1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5F1,OR5I1,OR5J2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9"
TCGA.AG.A01Y	11	58901551	60061197	309	0.8143	LARGE-GAIN	NONFOCAL	22	"DTX4,FAM111A,GIF,MPEG1,MRPL16,MS4A2,MS4A3,MS4A4A,MS4A6A,OOSP2,OR10V1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OSBP,PATL1,STX3,TCN1"
TCGA.A6.3808.01A	11	59522993	60565819	114	0.9143	LARGE-GAIN	NONFOCAL	19	"GIF,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,STX3,TCN1"
TCGA.AG.A00Y.01A	11	62189645	62529027	126	0.7529	LARGE-GAIN	NONFOCAL	22	"AHNAK,B3GAT3,BSCL2,C11orf98,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,POLR2G,ROM1,SCGB1A1,TTC9C,TUT1,UBXN1,UQCC3,ZBTB3"
TCGA.DC.6158	11	64299329	65566718	175	0.7134	LARGE-GAIN	NONFOCAL	51	"AP5B1,ARL2,ATG2A,BATF2,C11orf85,CAPN1,CDC42BPG,CDC42EP2,CDCA5,DPF2,EHBP1L1,EHD1,FAM89B,FAU,FRMD8,GPHA2,KAT5,KCNK7,LTBP3,MAP3K11,MAP4K2,MEN1,MRPL49,NAALADL1,NRXN2,OVOL1,PCNXL3,POLA2,PPP2R5B,PYGM,RASGRP2,RELA,RNASEH2C,SAC3D1,SCYL1,SF1,SIPA1,SLC22A11,SLC22A12,SLC22A20,SLC25A45,SNX15,SPDYC,SSSCA1,SYVN1,TIGD3,TM7SF2,TMEM262,VPS51,ZFPL1,ZNHIT2"
TCGA.D5.6898	11	74481317	75612877	302	0.6796	LARGE-GAIN	NONFOCAL	16	"ARRB1,DGAT2,GDPD5,KLHL35,MAP6,MOGAT2,NEU3,OR2AT4,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,UVRAG,XRRA1"
TCGA.DM.A1D0	11	77671280	79294551	681	1.2299	LARGE-GAIN	NONFOCAL	11	"ALG8,GAB2,INTS4,KCTD14,KCTD21,NARS2,NDUFC2,NDUFC2-KCTD14,TENM4,THRSP,USP35"
TCGA.A6.3808.01A	11	82893996	86108611	137	0.9572	LARGE-GAIN	NONFOCAL	14	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,DLG2,EED,PCF11,PICALM,SYTL2,TMEM126A,TMEM126B"
TCGA.AA.3509.01A	11	88323737	89948293	86	0.7073	LARGE-GAIN	NONFOCAL	14	"CHORDC1,FOLH1B,GRM5,NAALAD2,NOX4,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AZ.4684.01A	11	88323737	89948293	86	0.8677	LARGE-GAIN	NONFOCAL	14	"CHORDC1,FOLH1B,GRM5,NAALAD2,NOX4,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AZ.4684.01A	11	94910831	101832460	133	0.7813	LARGE-GAIN	NONFOCAL	14	"ANGPTL5,ARHGAP42,CCDC82,CEP126,CEP57,CNTN5,FAM76B,JRKL,MAML2,MTMR2,PGR,SESN3,TMEM133,TRPC6"
TCGA.G4.6317	11	101041802	102608854	521	1.762	LARGE-GAIN	NONFOCAL	12	"ANGPTL5,BIRC2,BIRC3,C11orf70,CEP126,MMP20,MMP27,MMP7,MMP8,TMEM123,TRPC6,YAP1"
TCGA.A6.3808.01A	11	103018450	107518177	174	1.0107	LARGE-GAIN	NONFOCAL	18	"AASDHPPT,ALKBH8,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CWF19L2,DDI1,DYNC2H1,ELMOD1,GRIA4,GUCY1A2,KBTBD3,MSANTD4,PDGFD"
TCGA.A6.3808.01A	11	117279589	118209808	117	0.9163	LARGE-GAIN	NONFOCAL	15	"AMICA1,CD3D,CD3E,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IL10RA,MPZL2,MPZL3,SCN2B,SCN4B,TMPRSS13,TMPRSS4"
TCGA.DT.5265	11	117783175	118569096	265	0.8929	LARGE-GAIN	NONFOCAL	20	"AMICA1,ARCN1,ATP5L,CD3D,CD3E,CD3G,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,PHLDB1,SCN2B,SCN4B,TMEM25,TMPRSS13,TMPRSS4,TREH,TTC36,UBE4A"
TCGA.AG.3731	12	192219	2015159	548	0.7391	LARGE-GAIN	NONFOCAL	15	"ADIPOR2,B4GALNT3,CACNA2D4,CCDC77,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.G5.6641	12	192219	2647914	808	1.6526	LARGE-GAIN	NONFOCAL	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.D5.6541	12	192219	3708695	1213	0.8123	LARGE-GAIN	NONFOCAL	26	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,PRMT8,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AD.6965	12	192219	3774946	1245	0.9262	LARGE-GAIN	NONFOCAL	27	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,CRACR2A,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,PRMT8,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AA.3660	12	192219	5444139	2097	1.0535	LARGE-GAIN	NONFOCAL	41	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AG.A014.01A	12	247392	6571158	544	1.0358	LARGE-GAIN	NONFOCAL	51	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD9,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,LTBR,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VWF,WNK1,WNT5B"
TCGA.AZ.6606	12	1395129	4616900	1278	2.5821	LARGE-GAIN	NONFOCAL	24	"ADIPOR2,C12orf4,CACNA1C,CACNA2D4,CCND2,CRACR2A,DCP1B,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,ITFG2,LRTM2,NRIP2,PARP11,PRMT8,RHNO1,TEAD4,TIGAR,TSPAN9,TULP3,WNT5B"
TCGA.AG.3731	12	2022410	12136007	3619	0.7401	LARGE-GAIN	NONFOCAL	154	Too-Many
TCGA.DM.A1D7	12	2289898	8372756	2338	0.931	LARGE-GAIN	NONFOCAL	89	"ACRBP,ACSM4,AKAP3,ANO2,APOBEC1,ATN1,C12orf4,C12orf57,C1R,C1RL,C1S,C3AR1,CACNA1C,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4A,CLEC4C,CLSTN3,COPS7A,CRACR2A,DPPA3,DYRK4,EMG1,ENO2,FGF23,FGF6,FKBP4,FOXJ2,FOXM1,GALNT8,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,ITFG2,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NDUFA9,NECAP1,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RBP5,RHNO1,SCNN1A,SLC2A14,SLC2A3,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,ZNF384,ZNF705A"
TCGA.AG.3881	12	2354869	4359471	837	1.0257	LARGE-GAIN	NONFOCAL	12	"CACNA1C,CRACR2A,FKBP4,FOXM1,ITFG2,NRIP2,PARP11,PRMT8,RHNO1,TEAD4,TSPAN9,TULP3"
TCGA.G5.6641	12	2647940	5117899	1061	1.3597	LARGE-GAIN	NONFOCAL	24	"AKAP3,C12orf4,CACNA1C,CCND2,CRACR2A,DYRK4,FGF23,FGF6,FKBP4,FOXM1,GALNT8,ITFG2,KCNA1,KCNA6,NDUFA9,NRIP2,PARP11,PRMT8,RAD51AP1,RHNO1,TEAD4,TIGAR,TSPAN9,TULP3"
TCGA.A6.3807	12	3083708	4805157	766	1.1661	LARGE-GAIN	NONFOCAL	14	"AKAP3,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,NDUFA9,PARP11,PRMT8,RAD51AP1,TEAD4,TIGAR,TSPAN9"
TCGA.DY.A0XA	12	3310772	4708198	635	1.9579	LARGE-GAIN	NONFOCAL	11	"C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,PARP11,PRMT8,RAD51AP1,TIGAR,TSPAN9"
TCGA.A6.3808.01A	12	3392160	4919171	111	0.8765	LARGE-GAIN	NONFOCAL	15	"AKAP3,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA6,NDUFA9,PARP11,PRMT8,RAD51AP1,TIGAR,TSPAN9"
TCGA.D5.6541	12	3709020	5525569	938	1.2736	LARGE-GAIN	NONFOCAL	15	"AKAP3,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,PARP11,RAD51AP1,TIGAR"
TCGA.AD.6965	12	3776759	6195526	1266	1.4938	LARGE-GAIN	NONFOCAL	18	"AKAP3,ANO2,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,PARP11,RAD51AP1,TIGAR,VWF"
TCGA.AZ.6606	12	4638494	5776559	674	1.1069	LARGE-GAIN	NONFOCAL	11	"AKAP3,ANO2,C12orf4,DYRK4,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,RAD51AP1"
TCGA.AA.3844	12	6065069	7401342	337	0.7104	LARGE-GAIN	NONFOCAL	46	"ACRBP,ATN1,C12orf57,C1R,C1RL,C1S,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PEX5,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AA.3941	12	6073519	7377418	325	0.6828	LARGE-GAIN	NONFOCAL	46	"ACRBP,ATN1,C12orf57,C1R,C1RL,C1S,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PEX5,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AA.3715	12	6464808	6736335	65	0.972	LARGE-GAIN	NONFOCAL	12	"CD27,CHD4,GAPDH,IFFO1,LPAR5,LTBR,MRPL51,NCAPD2,NOP2,SCNN1A,TAPBPL,VAMP1"
TCGA.AG.A014.01A	12	6573558	7090116	227	1.3619	LARGE-GAIN	NONFOCAL	32	"ACRBP,ATN1,C12orf57,CD4,CDCA3,CHD4,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PHB2,PIANP,PTMS,PTPN6,SPSB2,TPI1,USP5,VAMP1,ZNF384"
TCGA.AG.A014.01A	12	7090698	34178761	1624	0.9199	LARGE-GAIN	NONFOCAL	197	Too-Many
TCGA.DY.A0XA	12	10306057	10936200	232	2.0415	LARGE-GAIN	NONFOCAL	13	"GABARAPL1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRK1,MAGOHB,OLR1,STYK1,TMEM52B,YBX3"
TCGA.AA.A00N.01A	12	10875402	11338547	27	0.8843	LARGE-GAIN	NONFOCAL	18	"PRH1,PRH2,PRR4,SMIM10L1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,YBX3"
TCGA.CL.5917	12	19177710	34296849	5525	1.01	LARGE-GAIN	NONFOCAL	69	"ABCC9,AEBP2,ALG10,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,DDX11,DENND5B,DNM1L,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IPO8,ITPR2,KCNJ8,KIAA1551,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,PDE3A,PKP2,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.NH.A50U	12	19296293	21728344	834	0.7618	LARGE-GAIN	NONFOCAL	14	"AEBP2,GOLT1B,GYS2,IAPP,PDE3A,PLEKHA5,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SPX"
TCGA.AG.3731	12	19742054	27173892	2735	0.7419	LARGE-GAIN	NONFOCAL	34	"ABCC9,ASUN,BCAT1,BHLHE41,C12orf77,C2CD5,CASC1,CMAS,ETNK1,FGFR1OP2,GOLT1B,GYS2,IAPP,ITPR2,KCNJ8,KRAS,LDHB,LMNTD1,LRMP,LYRM5,PDE3A,PYROXD1,RASSF8,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,SSPN,ST8SIA1,TM7SF3"
TCGA.AG.3881	12	19762816	21709618	701	1.0973	LARGE-GAIN	NONFOCAL	12	"GOLT1B,GYS2,IAPP,PDE3A,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SPX"
TCGA.AA.3509.01A	12	20852462	22837753	210	0.7017	LARGE-GAIN	NONFOCAL	18	"ABCC9,C2CD5,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SPX,ST8SIA1"
TCGA.CM.4744.01A	12	24736506	34178761	509	1.0694	LARGE-GAIN	NONFOCAL	47	"ALG10,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf71,C12orf77,CAPRIN2,CASC1,CCDC91,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,H3F3C,IPO8,ITPR2,KIAA1551,KLHL42,KRAS,LMNTD1,LRMP,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SSPN,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.G5.6641	12	24955040	26626637	739	1.7699	LARGE-GAIN	NONFOCAL	11	"BCAT1,BHLHE41,C12orf77,CASC1,ITPR2,KRAS,LMNTD1,LRMP,LYRM5,RASSF8,SSPN"
TCGA.G5.6641	12	26629367	29915777	1192	1.018	LARGE-GAIN	NONFOCAL	20	"ARNTL2,ASUN,C12orf71,CCDC91,ERGIC2,FAR2,FGFR1OP2,ITPR2,KLHL42,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,TM7SF3,TMTC1"
TCGA.NH.A8F7	12	27059511	28470083	449	1.4181	LARGE-GAIN	NONFOCAL	15	"ARNTL2,ASUN,C12orf71,CCDC91,FGFR1OP2,KLHL42,MANSC4,MED21,MRPS35,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,TM7SF3"
TCGA.A6.3808.01A	12	54894292	56109852	109	1.0801	LARGE-GAIN	NONFOCAL	26	"BLOC1S1,DCD,ITGA7,LACRT,METTL7B,MUCL1,NCKAP1L,NEUROD4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PDE1B,PPP1R1A,TESPA1"
TCGA.AA.A00N.01A	12	55024610	55758943	35	0.9149	LARGE-GAIN	NONFOCAL	12	"DCD,LACRT,MUCL1,NEUROD4,OR10A7,OR6C1,OR6C3,OR6C6,OR6C74,OR6C75,OR9K2,TESPA1"
TCGA.AA.3509.01A	12	55041977	55944970	32	0.7197	LARGE-GAIN	NONFOCAL	16	"DCD,MUCL1,NEUROD4,OR10A7,OR6C1,OR6C2,OR6C3,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AZ.4684.01A	12	55041977	55944970	32	0.8122	LARGE-GAIN	NONFOCAL	16	"DCD,MUCL1,NEUROD4,OR10A7,OR6C1,OR6C2,OR6C3,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AA.3861.01A	12	56636914	57106522	162	0.7279	LARGE-GAIN	NONFOCAL	17	"ANKRD52,APOF,ATP5B,BAZ2A,CNPY2,COQ10A,CS,GLS2,IL23A,MIP,NACA,PAN2,PTGES3,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.G5.6641	12	68341044	73261524	1748	1.0029	LARGE-GAIN	NONFOCAL	31	"BEST3,CCT2,CNOT2,CPM,CPSF6,FRS2,IFNG,IL22,IL26,KCNMB4,LGR5,LRRC10,LYZ,MDM1,MDM2,MYRFL,NUP107,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,SLC35E3,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,YEATS4,ZFC3H1"
TCGA.A6.3808.01A	12	70193938	93246661	735	0.7895	LARGE-GAIN	NONFOCAL	72	"ACSS3,ALX1,ATP2B1,ATXN7L3B,BBS10,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CAPS2,CCDC59,CCER1,CEP290,CLLU1,CLLU1OS,CNOT2,CSRP2,DCN,DUSP6,E2F7,EEA1,EPYC,GALNT4,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KERA,KITLG,KRR1,LGR5,LIN7A,LRRIQ1,LUM,METTL25,MGAT4C,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NTS,OSBPL8,OTOGL,PAWR,PHLDA1,PLEKHG7,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RASSF9,SLC6A15,SYT1,TBC1D15,THAP2,TMEM19,TMTC2,TMTC3,TPH2,TRHDE,TSPAN19,TSPAN8,ZDHHC17,ZFC3H1"
TCGA.AA.3509.01A	12	80187589	88480117	255	0.8423	LARGE-GAIN	NONFOCAL	21	"ACSS3,ALX1,C12orf29,C12orf50,CCDC59,CEP290,LIN7A,LRRIQ1,METTL25,MGAT4C,MYF5,MYF6,NTS,OTOGL,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,TMTC2,TSPAN19"
TCGA.AA.A00N.01A	12	80722388	88391762	203	0.714	LARGE-GAIN	NONFOCAL	18	"ACSS3,ALX1,C12orf50,CCDC59,LIN7A,LRRIQ1,METTL25,MGAT4C,MYF5,MYF6,NTS,OTOGL,PPFIA2,PTPRQ,RASSF9,SLC6A15,TMTC2,TSPAN19"
TCGA.AZ.4684.01A	12	80726714	88480117	218	0.9366	LARGE-GAIN	NONFOCAL	20	"ACSS3,ALX1,C12orf29,C12orf50,CCDC59,CEP290,LIN7A,LRRIQ1,METTL25,MGAT4C,MYF5,MYF6,NTS,OTOGL,PPFIA2,PTPRQ,RASSF9,SLC6A15,TMTC2,TSPAN19"
TCGA.AA.3941	12	120077615	125814859	1296	0.686	LARGE-GAIN	NONFOCAL	89	"AACS,ABCB9,ACADS,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,BRI3BP,C12orf43,C12orf65,CABP1,CAMKK2,CCDC62,CCDC64,CCDC92,CDK2AP1,CIT,CLIP1,COQ5,COX6A1,DDX55,DENR,DHX37,DIABLO,DNAH10,DYNLL1,EIF2B1,FAM101A,GATC,GCN1L1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,IL31,KDM2B,KNTC1,LRRC43,MLEC,MLXIP,MORN3,MPHOSPH9,MSI1,NCOR2,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PLA2G1B,POP5,PRKAB1,PSMD9,PXN,RAB35,RHOF,RILPL1,RILPL2,RNF10,RNF34,RPLP0,RSRC2,SBNO1,SCARB1,SETD1B,SETD8,SIRT4,SNRNP35,SPPL3,SRSF9,TCTN2,TMED2,TMEM120B,TMEM132B,TMEM233,TRIAP1,UBC,UNC119B,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.F5.6571	13	19212261	22068224	801	0.9646	LARGE-GAIN	NONFOCAL	20	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3975	13	19212261	22156193	825	1.6645	LARGE-GAIN	NONFOCAL	20	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AF.A56N	13	19212261	22563929	1011	0.6819	LARGE-GAIN	NONFOCAL	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DC.4745	13	19212261	23969865	1667	0.8541	LARGE-GAIN	NONFOCAL	23	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.CM.4752	13	19212261	24521484	1922	0.72	LARGE-GAIN	NONFOCAL	27	"C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.A6.6142	13	19212261	24605799	1971	0.7462	LARGE-GAIN	NONFOCAL	28	"C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3681	13	19212261	25977958	2567	0.7909	LARGE-GAIN	NONFOCAL	38	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.3612	13	19212261	25977958	2544	0.9643	LARGE-GAIN	NONFOCAL	38	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3860	13	19212261	27738504	3366	1.2004	LARGE-GAIN	NONFOCAL	44	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.F4.6459	13	19212261	29384611	4017	1.4048	LARGE-GAIN	NONFOCAL	59	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SPATA13,TNFRSF19,TPTE2,TUBA3C,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3846	13	19212261	35929042	6640	0.7211	LARGE-GAIN	NONFOCAL	81	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3667	13	19212261	36072728	6670	0.7553	LARGE-GAIN	NONFOCAL	82	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.NH.A6GB	13	19212261	36137494	6700	0.9366	LARGE-GAIN	NONFOCAL	82	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DY.A1DC	13	19212261	37104854	7107	0.6836	LARGE-GAIN	NONFOCAL	88	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CRYL1,DCLK1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SOHLH2,SPATA13,SPG20,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.A6.5660	13	19212261	40222643	8377	0.7629	LARGE-GAIN	NONFOCAL	103	Too-Many
TCGA.G4.6303	13	19212261	45284896	10277	0.7644	LARGE-GAIN	NONFOCAL	127	Too-Many
TCGA.AA.3973	13	19212261	50798729	11977	0.9048	LARGE-GAIN	NONFOCAL	166	Too-Many
TCGA.EI.6509	13	19212261	54668511	13087	1.0205	LARGE-GAIN	NONFOCAL	187	Too-Many
TCGA.DY.A1DF	13	19212261	54794231	13122	1.3656	LARGE-GAIN	NONFOCAL	187	Too-Many
TCGA.F5.6863	13	19212261	58583349	13855	0.7763	LARGE-GAIN	NONFOCAL	193	Too-Many
TCGA.AA.3561	13	19212261	60420313	14491	0.9388	LARGE-GAIN	NONFOCAL	194	Too-Many
TCGA.AA.3549	13	19212261	64224791	15526	1.0344	LARGE-GAIN	NONFOCAL	196	Too-Many
TCGA.G4.6310	13	19212261	69235365	16867	0.7972	LARGE-GAIN	NONFOCAL	197	Too-Many
TCGA.AZ.6606	13	19212261	70746143	17293	1.1394	LARGE-GAIN	NONFOCAL	198	Too-Many
TCGA.A6.2680	13	19212261	71277508	17527	0.8271	LARGE-GAIN	NONFOCAL	198	Too-Many
TCGA.AA.3972	13	19212261	74601934	18761	1.1319	LARGE-GAIN	NONFOCAL	205	Too-Many
TCGA.AG.3896	13	19212261	78660003	20236	0.978	LARGE-GAIN	NONFOCAL	218	Too-Many
TCGA.AA.3693	13	19212261	86427705	22735	0.8148	LARGE-GAIN	NONFOCAL	225	Too-Many
TCGA.AZ.4682	13	19212261	93214167	24569	0.7496	LARGE-GAIN	NONFOCAL	227	Too-Many
TCGA.CI.6622	13	19212261	98510372	26347	0.6826	LARGE-GAIN	NONFOCAL	241	Too-Many
TCGA.EI.6881	13	19212261	100384102	27081	0.7437	LARGE-GAIN	NONFOCAL	252	Too-Many
TCGA.NH.A50T	13	19212261	105029238	29011	0.8044	LARGE-GAIN	NONFOCAL	269	Too-Many
TCGA.A6.6650	13	19212261	108377299	27994	0.9778	LARGE-GAIN	NONFOCAL	273	Too-Many
TCGA.5M.AATE	13	19212261	115106995	33467	0.6928	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.3807	13	19212261	115106995	33292	0.8526	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.5662	13	19212261	115106995	33388	1.1731	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.6652	13	19212261	115106995	33463	0.7581	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.6782	13	19212261	115106995	33326	0.7625	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3517	13	19212261	115106995	33439	0.8075	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3666	13	19212261	115106995	33497	0.8592	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3814	13	19212261	115106995	33493	0.7519	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AF.3911	13	19212261	115106995	33475	0.8903	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AF.4110	13	19212261	115106995	33472	0.6871	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.3592	13	19212261	115106995	33477	0.8208	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.3725	13	19212261	115106995	33450	0.758	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.3885	13	19212261	115106995	33486	1.0259	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.4022	13	19212261	115106995	33485	1.1242	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.CK.4947	13	19212261	115106995	33438	0.7031	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.CK.6748	13	19212261	115106995	33406	0.8444	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.CL.5917	13	19212261	115106995	33381	0.83	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.5864	13	19212261	115106995	33419	0.7365	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.D5.6532	13	19212261	115106995	33447	0.7987	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.D5.6932	13	19212261	115106995	33386	0.9262	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.DM.A1DA	13	19212261	115106995	33456	0.7319	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.DM.A285	13	19212261	115106995	33374	0.6826	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.DY.A1DD	13	19212261	115106995	33465	0.8513	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.EI.6514	13	19212261	115106995	33435	0.8583	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.G4.6297	13	19212261	115106995	33468	0.9548	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.G4.6306	13	19212261	115106995	33466	0.7759	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.G5.6233	13	19212261	115106995	33481	0.9091	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.QG.A5Z1	13	19260564	29070572	3837	1.3529	LARGE-GAIN	NONFOCAL	57	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.5M.AAT5	13	19260564	57749718	13729	0.7191	LARGE-GAIN	NONFOCAL	192	Too-Many
TCGA.CM.5348	13	19311779	31578081	4995	0.7357	LARGE-GAIN	NONFOCAL	68	"ALOX5AP,AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,IFT88,IL17D,KATNAL1,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AZ.4308	13	19496927	64860355	15640	0.7214	LARGE-GAIN	NONFOCAL	196	Too-Many
TCGA.D5.6538	13	19543914	115106995	33413	0.8486	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.A00L.01A	13	19600070	21311806	73	1.0057	LARGE-GAIN	NONFOCAL	13	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,MPHOSPH8,N6AMT2,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AA.3509.01A	13	19600070	21373273	128	0.9679	LARGE-GAIN	NONFOCAL	14	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,MPHOSPH8,N6AMT2,PSPC1,TPTE2,TUBA3C,XPO4,ZMYM2,ZMYM5"
TCGA.AG.A014.01A	13	19600070	24860314	250	1.1522	LARGE-GAIN	NONFOCAL	28	"C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.A00F.01A	13	19600070	25448205	256	0.8167	LARGE-GAIN	NONFOCAL	32	"ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3967.01A	13	19600070	34540156	865	1.1172	LARGE-GAIN	NONFOCAL	80	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.A02E.01A	13	19600070	73342906	1889	0.7873	LARGE-GAIN	NONFOCAL	202	Too-Many
TCGA.AG.A016.01A	13	19600070	111279754	2847	0.6805	LARGE-GAIN	NONFOCAL	282	Too-Many
TCGA.A6.3810.01A	13	19600070	112721932	3113	1.2435	LARGE-GAIN	NONFOCAL	288	Too-Many
TCGA.AA.A01F.01A	13	19600070	115089311	2659	0.7256	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.A00Y.01A	13	19600070	115089311	3133	0.924	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.A02G.01A	13	19600070	115089311	3117	0.7686	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.A032.01A	13	19600070	115089311	3082	0.9401	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.F4.6460	13	19745250	115106995	33329	0.7691	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.QL.A97D	13	19773378	26133008	2479	0.831	LARGE-GAIN	NONFOCAL	37	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3662	13	19773378	115106995	33303	0.8712	LARGE-GAIN	NONFOCAL	313	Too-Many
TCGA.AA.3867	13	19842531	53880808	12649	0.7836	LARGE-GAIN	NONFOCAL	186	Too-Many
TCGA.AA.3941	13	19925983	22316049	666	0.951	LARGE-GAIN	NONFOCAL	20	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.G4.6294	13	19984412	60928910	14415	1.12	LARGE-GAIN	NONFOCAL	193	Too-Many
TCGA.AG.A01L.01A	13	20224093	22077043	142	0.8999	LARGE-GAIN	NONFOCAL	18	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3488	13	20488211	55121021	12917	0.7678	LARGE-GAIN	NONFOCAL	182	Too-Many
TCGA.RU.A8FL	13	20562087	30229664	4096	0.8054	LARGE-GAIN	NONFOCAL	56	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TNFRSF19,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2"
TCGA.AZ.4681	13	20602740	29475442	3719	1.1303	LARGE-GAIN	NONFOCAL	54	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MRPL57,MTIF3,MTMR6,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SPATA13,TNFRSF19,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2"
TCGA.AA.3548	13	20637139	21753802	370	0.6781	LARGE-GAIN	NONFOCAL	13	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MRPL57,N6AMT2,SAP18,SKA3,XPO4,ZMYM2"
TCGA.DM.A28E	13	20887859	22820527	772	1.3075	LARGE-GAIN	NONFOCAL	12	"CRYL1,FGF9,IFT88,IL17D,LATS2,MICU2,MRPL57,N6AMT2,SAP18,SKA3,XPO4,ZDHHC20"
TCGA.CK.5914.01A	13	21955544	25435369	181	0.7076	LARGE-GAIN	NONFOCAL	14	"ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,FGF9,MICU2,MIPEP,PARP4,RNF17,SACS,SGCG,SPATA13,TNFRSF19,ZDHHC20"
TCGA.AG.A01L.01A	13	22113377	25841870	195	0.8884	LARGE-GAIN	NONFOCAL	17	"AMER2,ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,FGF9,MICU2,MIPEP,MTMR6,PABPC3,PARP4,RNF17,SACS,SGCG,SPATA13,TNFRSF19"
TCGA.AA.3975	13	22160335	54260523	12114	1.3084	LARGE-GAIN	NONFOCAL	168	Too-Many
TCGA.AA.A02K.01A	13	22275313	33344253	689	0.7619	LARGE-GAIN	NONFOCAL	57	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FGF9,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,LNX2,MEDAG,MIPEP,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,RXFP2,SACS,SGCG,SHISA2,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,UBL3,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.AA.3679	13	22455861	59495893	13195	0.8884	LARGE-GAIN	NONFOCAL	172	Too-Many
TCGA.DM.A28E	13	22828711	115106995	32207	1.052	LARGE-GAIN	NONFOCAL	293	Too-Many
TCGA.AF.A56N	13	23545596	34188262	4581	0.6799	LARGE-GAIN	NONFOCAL	58	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MEDAG,MIPEP,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,RXFP2,SACS,SGCG,SHISA2,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,UBL3,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.AA.3941	13	23638209	31682195	3595	0.8551	LARGE-GAIN	NONFOCAL	47	"ALOX5AP,AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FLT1,FLT3,GPR12,GSX1,GTF3A,HMGB1,KATNAL1,LNX2,MEDAG,MIPEP,MTIF3,MTMR6,MTUS2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SACS,SGCG,SHISA2,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,UBL3,URAD,USP12,USPL1,WASF3"
TCGA.AA.3509.01A	13	23915373	31548917	459	1.0096	LARGE-GAIN	NONFOCAL	46	"ALOX5AP,AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FLT1,FLT3,GPR12,GSX1,GTF3A,HMGB1,KATNAL1,LNX2,MEDAG,MIPEP,MTIF3,MTMR6,MTUS2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SACS,SHISA2,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,UBL3,URAD,USP12,USPL1,WASF3"
TCGA.AA.A00L.01A	13	24164256	46287305	978	0.7217	LARGE-GAIN	NONFOCAL	113	Too-Many
TCGA.CM.4752	13	24528447	112562250	30848	0.6942	LARGE-GAIN	NONFOCAL	260	Too-Many
TCGA.A6.6142	13	24614313	29050842	1893	1.6521	LARGE-GAIN	NONFOCAL	30	"AMER2,ATP12A,ATP8A2,C1QTNF9,CDK8,CDX2,CENPJ,FLT1,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,MTMR6,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,RASL11A,RNF17,RNF6,RPL21,SHISA2,SPATA13,URAD,USP12,WASF3"
TCGA.CM.5862	13	24737950	28402549	1553	1.1727	LARGE-GAIN	NONFOCAL	24	"AMER2,ATP12A,ATP8A2,C1QTNF9,CDK8,CENPJ,GPR12,GSX1,GTF3A,LNX2,MTIF3,MTMR6,NUPL1,PABPC3,PARP4,POLR1D,RASL11A,RNF17,RNF6,RPL21,SHISA2,SPATA13,USP12,WASF3"
TCGA.AA.3544	13	24822855	29817193	2018	0.8224	LARGE-GAIN	NONFOCAL	33	"AMER2,ATP12A,ATP8A2,C1QTNF9,CDK8,CDX2,CENPJ,FLT1,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,MTMR6,MTUS2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SHISA2,SLC46A3,SPATA13,URAD,USP12,WASF3"
TCGA.DY.A0XA	13	24970707	27603263	1102	0.7738	LARGE-GAIN	NONFOCAL	14	"AMER2,ATP12A,ATP8A2,CDK8,CENPJ,GPR12,MTMR6,NUPL1,PABPC3,PARP4,RNF17,RNF6,SHISA2,WASF3"
TCGA.AY.A8YK	13	25514639	115106995	31066	0.7006	LARGE-GAIN	NONFOCAL	281	Too-Many
TCGA.DC.6683	13	25675969	47197753	8394	0.744	LARGE-GAIN	NONFOCAL	109	Too-Many
TCGA.AG.A014.01A	13	25823323	37007158	588	1.1528	LARGE-GAIN	NONFOCAL	53	"ALOX5AP,ATP8A2,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,DCLK1,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MAB21L1,MEDAG,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,NBEA,NUPL1,PAN3,PDS5B,PDX1,POLR1D,POMP,RASL11A,RFC3,RNF6,RPL21,RXFP2,SHISA2,SLC46A3,SLC7A1,SOHLH2,SPG20,STARD13,TEX26,UBL3,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.AG.A01L.01A	13	25894630	31037619	237	1.1405	LARGE-GAIN	NONFOCAL	28	"ATP8A2,CDK8,CDX2,FLT1,FLT3,GPR12,GSX1,GTF3A,HMGB1,KATNAL1,LNX2,MTIF3,MTUS2,NUPL1,PAN3,PDX1,POLR1D,POMP,RASL11A,RNF6,RPL21,SHISA2,SLC46A3,SLC7A1,UBL3,URAD,USP12,WASF3"
TCGA.AA.3681	13	25981162	34316190	3532	0.7764	LARGE-GAIN	NONFOCAL	42	"ALOX5AP,ATP8A2,B3GALTL,BRCA2,CDK8,CDX2,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MEDAG,MTIF3,MTUS2,N4BP2L1,N4BP2L2,PAN3,PDS5B,PDX1,POLR1D,POMP,RASL11A,RNF6,RPL21,RXFP2,SHISA2,SLC46A3,SLC7A1,STARD13,TEX26,UBL3,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.AG.3612	13	25981162	115106995	30734	0.9773	LARGE-GAIN	NONFOCAL	277	Too-Many
TCGA.QL.A97D	13	26142341	84161250	19351	0.7952	LARGE-GAIN	NONFOCAL	186	Too-Many
TCGA.AY.A54L.01A	13	26163709	28602278	98	1.7909	LARGE-GAIN	NONFOCAL	18	"ATP8A2,CDK8,CDX2,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,PDX1,POLR1D,RASL11A,RNF6,RPL21,SHISA2,URAD,USP12,WASF3"
TCGA.DM.A1D0	13	26757810	115106995	30400	0.89	LARGE-GAIN	NONFOCAL	275	Too-Many
TCGA.AG.4021	13	26859546	31405421	1976	1.6272	LARGE-GAIN	NONFOCAL	26	"ALOX5AP,CDK8,CDX2,FLT1,FLT3,GPR12,GSX1,GTF3A,HMGB1,KATNAL1,LNX2,MTIF3,MTUS2,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,SLC7A1,UBL3,URAD,USP12,USPL1,WASF3"
TCGA.AG.3594	13	26898488	28622355	771	0.946	LARGE-GAIN	NONFOCAL	15	"CDK8,CDX2,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,PDX1,POLR1D,RASL11A,RPL21,URAD,USP12,WASF3"
TCGA.AA.3968	13	26931593	28879331	822	1.0787	LARGE-GAIN	NONFOCAL	17	"CDK8,CDX2,FLT1,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,PAN3,PDX1,POLR1D,RASL11A,RPL21,URAD,USP12,WASF3"
TCGA.F5.6702	13	26974561	29998587	1295	1.5448	LARGE-GAIN	NONFOCAL	20	"CDK8,CDX2,FLT1,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,MTUS2,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,URAD,USP12,WASF3"
TCGA.AA.3548	13	27308313	28730022	629	1.2666	LARGE-GAIN	NONFOCAL	14	"CDX2,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,PAN3,PDX1,POLR1D,RASL11A,RPL21,URAD,USP12"
TCGA.AF.2693	13	27354279	31108726	1641	0.7275	LARGE-GAIN	NONFOCAL	21	"CDX2,FLT1,FLT3,GSX1,GTF3A,HMGB1,KATNAL1,LNX2,MTIF3,MTUS2,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,SLC7A1,UBL3,URAD,USP12"
TCGA.D5.6926	13	27396611	29384611	858	1.2058	LARGE-GAIN	NONFOCAL	16	"CDX2,FLT1,FLT3,GSX1,GTF3A,LNX2,MTIF3,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,URAD,USP12"
TCGA.D5.6533	13	27472563	53183299	9346	0.6852	LARGE-GAIN	NONFOCAL	139	Too-Many
TCGA.AA.3712	13	27555919	28717391	468	1.6058	LARGE-GAIN	NONFOCAL	13	"CDX2,FLT3,GSX1,GTF3A,LNX2,MTIF3,PAN3,PDX1,POLR1D,RASL11A,RPL21,URAD,USP12"
TCGA.DY.A0XA	13	27603370	29579676	752	1.2426	LARGE-GAIN	NONFOCAL	16	"CDX2,FLT1,FLT3,GSX1,GTF3A,LNX2,MTIF3,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,URAD,USP12"
TCGA.F5.6571	13	27712092	28779476	400	1.2815	LARGE-GAIN	NONFOCAL	13	"CDX2,FLT3,GSX1,GTF3A,LNX2,MTIF3,PAN3,PDX1,POLR1D,RASL11A,RPL21,URAD,USP12"
TCGA.A6.5667	13	27924009	29935159	808	0.7051	LARGE-GAIN	NONFOCAL	14	"CDX2,FLT1,FLT3,GSX1,GTF3A,LNX2,MTIF3,MTUS2,PAN3,PDX1,POLR1D,POMP,SLC46A3,URAD"
TCGA.AG.A02X.01A	13	28006828	28893512	69	2.0203	LARGE-GAIN	NONFOCAL	11	"CDX2,FLT1,FLT3,GSX1,GTF3A,LNX2,MTIF3,PAN3,PDX1,POLR1D,URAD"
TCGA.AA.A00F.01A	13	28122425	32811499	207	0.7448	LARGE-GAIN	NONFOCAL	24	"ALOX5AP,B3GALTL,CDX2,FLT1,FLT3,FRY,GSX1,HMGB1,HSPH1,KATNAL1,LNX2,MEDAG,MTUS2,PAN3,PDX1,POLR1D,POMP,RXFP2,SLC46A3,SLC7A1,TEX26,UBL3,URAD,USPL1"
TCGA.DC.4749	13	28192929	29692758	584	1.9295	LARGE-GAIN	NONFOCAL	12	"CDX2,FLT1,FLT3,GSX1,LNX2,MTUS2,PAN3,PDX1,POLR1D,POMP,SLC46A3,URAD"
TCGA.CM.5862	13	28690532	33071126	1865	1.1317	LARGE-GAIN	NONFOCAL	21	"ALOX5AP,B3GALTL,BRCA2,FLT1,FRY,HMGB1,HSPH1,KATNAL1,MEDAG,MTUS2,N4BP2L1,N4BP2L2,PAN3,POMP,RXFP2,SLC46A3,SLC7A1,TEX26,UBL3,USPL1,ZAR1L"
TCGA.A6.6142	13	29051620	92989940	20638	0.7782	LARGE-GAIN	NONFOCAL	171	Too-Many
TCGA.QG.A5Z1	13	29080645	53964663	8909	0.8061	LARGE-GAIN	NONFOCAL	130	Too-Many
TCGA.AA.3544	13	29828975	115106995	29317	0.7966	LARGE-GAIN	NONFOCAL	255	Too-Many
TCGA.DM.A1HA	13	29980996	104707375	24775	0.8096	LARGE-GAIN	NONFOCAL	210	Too-Many
TCGA.F5.6571	13	30280575	56004978	9001	0.9463	LARGE-GAIN	NONFOCAL	126	Too-Many
TCGA.AA.3548	13	30308053	34736942	1871	1.0819	LARGE-GAIN	NONFOCAL	19	"ALOX5AP,B3GALTL,BRCA2,FRY,HMGB1,HSPH1,KATNAL1,KL,MEDAG,N4BP2L1,N4BP2L2,PDS5B,RFC3,RXFP2,STARD13,TEX26,UBL3,USPL1,ZAR1L"
TCGA.AG.A01L.01A	13	31195230	34397990	234	0.8202	LARGE-GAIN	NONFOCAL	16	"ALOX5AP,B3GALTL,BRCA2,FRY,HSPH1,KL,MEDAG,N4BP2L1,N4BP2L2,PDS5B,RFC3,RXFP2,STARD13,TEX26,USPL1,ZAR1L"
TCGA.CM.5862	13	33525438	43173197	3656	1.1708	LARGE-GAIN	NONFOCAL	41	"AKAP11,ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,COG6,CSNK1A1L,DCLK1,DGKH,ELF1,EXOSC8,FOXO1,FREM2,KBTBD6,KBTBD7,KL,LHFP,MAB21L1,MRPS31,MTRF1,NAA16,NBEA,NHLRC3,POSTN,PROSER1,RFC3,RFXAP,RGCC,SERTM1,SLC25A15,SMAD9,SOHLH2,SPG20,STARD13,STOML3,SUPT20H,TNFSF11,TRPC4,UFM1,VWA8,WBP4"
TCGA.AG.A01L.01A	13	34540156	101020679	1677	1.1415	LARGE-GAIN	NONFOCAL	176	Too-Many
TCGA.AA.3548	13	34739631	38516602	1397	0.7695	LARGE-GAIN	NONFOCAL	17	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,MAB21L1,NBEA,POSTN,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H,TRPC4"
TCGA.AA.3846	13	36014590	37858888	718	0.6806	LARGE-GAIN	NONFOCAL	15	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,MAB21L1,NBEA,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H"
TCGA.AA.A02H.01A	13	36026202	52348029	800	0.6845	LARGE-GAIN	NONFOCAL	93	"AKAP11,ALG5,ARL11,CAB39L,CCDC122,CCDC169,CCDC169-SOHLH2,CCNA1,CDADC1,COG3,COG6,CPB2,CSNK1A1L,CYSLTR2,DCLK1,DGKH,DHRS12,DLEU7,DNAJC15,EBPL,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,EXOSC8,FAM124A,FAM216B,FNDC3A,FOXO1,FREM2,GPALPP1,GTF2F2,HTR2A,INTS6,ITM2B,KBTBD6,KBTBD7,KCNRG,KCTD4,KIAA0226L,KPNA3,LACC1,LCP1,LHFP,LPAR6,LRCH1,LRRC63,MAB21L1,MED4,MLNR,MRPS31,MTRF1,NAA16,NBEA,NHLRC3,NUDT15,NUFIP1,PHF11,POSTN,PROSER1,RB1,RCBTB1,RCBTB2,RFXAP,RGCC,RNASEH2B,SERP2,SERPINE3,SERTM1,SETDB2,SIAH3,SLC25A15,SLC25A30,SMAD9,SMIM2,SOHLH2,SPERT,SPG20,SPRYD7,STOML3,SUCLA2,SUPT20H,TNFSF11,TPT1,TRIM13,TRPC4,TSC22D1,UFM1,VWA8,WBP4,WDFY2,ZC3H13"
TCGA.AA.3667	13	36144077	64223062	8823	0.7383	LARGE-GAIN	NONFOCAL	115	Too-Many
TCGA.AA.3509.01A	13	36202181	37599410	103	1.1172	LARGE-GAIN	NONFOCAL	13	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,DCLK1,EXOSC8,NBEA,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H"
TCGA.AA.3967.01A	13	36362284	99459884	1540	1.0564	LARGE-GAIN	NONFOCAL	165	Too-Many
TCGA.NH.A6GB	13	36683267	115106995	26477	0.9289	LARGE-GAIN	NONFOCAL	232	Too-Many
TCGA.AG.A014.01A	13	37016277	115089311	2155	1.1694	LARGE-GAIN	NONFOCAL	227	Too-Many
TCGA.DY.A1DC	13	38357383	48000337	3629	0.6811	LARGE-GAIN	NONFOCAL	49	"AKAP11,CCDC122,COG3,COG6,CPB2,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM216B,FOXO1,FREM2,GPALPP1,GTF2F2,HTR2A,KBTBD6,KBTBD7,KCTD4,KIAA0226L,LACC1,LCP1,LHFP,LRCH1,LRRC63,MRPS31,MTRF1,NAA16,NHLRC3,NUFIP1,PROSER1,RGCC,SERP2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,STOML3,TNFSF11,TPT1,TRPC4,TSC22D1,UFM1,VWA8,WBP4,ZC3H13"
TCGA.AA.3548	13	38523095	45553120	2651	1.0335	LARGE-GAIN	NONFOCAL	31	"AKAP11,CCDC122,COG6,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,FAM216B,FOXO1,FREM2,KBTBD6,KBTBD7,LACC1,LHFP,MRPS31,MTRF1,NAA16,NHLRC3,NUFIP1,PROSER1,RGCC,SERP2,SLC25A15,SMIM2,STOML3,TNFSF11,TSC22D1,UFM1,VWA8,WBP4"
TCGA.A6.5660	13	40314766	115106995	24965	0.7589	LARGE-GAIN	NONFOCAL	211	Too-Many
TCGA.AA.3941	13	40842491	42161170	398	0.8688	LARGE-GAIN	NONFOCAL	11	"ELF1,FOXO1,KBTBD6,KBTBD7,MRPS31,MTRF1,NAA16,RGCC,SLC25A15,VWA8,WBP4"
TCGA.AZ.4684.01A	13	41704574	44734691	168	0.8344	LARGE-GAIN	NONFOCAL	16	"AKAP11,CCDC122,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,KBTBD6,KBTBD7,LACC1,MTRF1,NAA16,RGCC,SMIM2,TNFSF11,VWA8"
TCGA.A6.3808.01A	13	41797351	44443413	157	0.9645	LARGE-GAIN	NONFOCAL	12	"AKAP11,CCDC122,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,MTRF1,NAA16,RGCC,TNFSF11,VWA8"
TCGA.AA.3509.01A	13	41902833	44734691	150	1.4841	LARGE-GAIN	NONFOCAL	13	"AKAP11,CCDC122,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,LACC1,NAA16,RGCC,SMIM2,TNFSF11,VWA8"
TCGA.D5.5539	13	42248516	115106995	24401	0.7004	LARGE-GAIN	NONFOCAL	200	Too-Many
TCGA.AA.A00D.01A	13	44455075	46537915	83	0.756	LARGE-GAIN	NONFOCAL	15	"COG3,ERICH6B,GPALPP1,GTF2F2,KCTD4,LACC1,NUFIP1,SERP2,SIAH3,SLC25A30,SMIM2,SPERT,TPT1,TSC22D1,ZC3H13"
TCGA.AA.3941	13	44616125	47558015	1021	0.79	LARGE-GAIN	NONFOCAL	21	"COG3,CPB2,ERICH6B,ESD,GPALPP1,GTF2F2,HTR2A,KCTD4,KIAA0226L,LCP1,LRCH1,LRRC63,NUFIP1,SERP2,SIAH3,SLC25A30,SMIM2,SPERT,TPT1,TSC22D1,ZC3H13"
TCGA.AA.3509.01A	13	44948117	51929127	399	1.1218	LARGE-GAIN	NONFOCAL	45	"ARL11,CAB39L,CDADC1,COG3,CPB2,CYSLTR2,DLEU7,EBPL,ERICH6B,ESD,FAM124A,FNDC3A,GPALPP1,GTF2F2,HTR2A,ITM2B,KCNRG,KCTD4,KIAA0226L,KPNA3,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NUDT15,NUFIP1,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERP2,SERPINE3,SETDB2,SIAH3,SLC25A30,SPERT,SPRYD7,SUCLA2,TPT1,TRIM13,TSC22D1,ZC3H13"
TCGA.CM.5862	13	45589514	46968837	457	1.1485	LARGE-GAIN	NONFOCAL	14	"COG3,CPB2,ERICH6B,GPALPP1,GTF2F2,KCTD4,KIAA0226L,LCP1,LRRC63,SIAH3,SLC25A30,SPERT,TPT1,ZC3H13"
TCGA.AA.A00L.01A	13	46627712	97986483	851	0.6963	LARGE-GAIN	NONFOCAL	102	Too-Many
TCGA.AA.A00F.01A	13	46917410	52606399	279	0.7397	LARGE-GAIN	NONFOCAL	36	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CYSLTR2,DHRS12,DLEU7,EBPL,ESD,FAM124A,FNDC3A,HTR2A,INTS6,ITM2B,KCNRG,KIAA0226L,KPNA3,LPAR6,LRCH1,MED4,MLNR,NUDT15,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUCLA2,TRIM13,UTP14C,WDFY2"
TCGA.DY.A1DC	13	48017731	53924430	1580	0.7078	LARGE-GAIN	NONFOCAL	42	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,CYSLTR2,DHRS12,DLEU7,EBPL,FAM124A,FNDC3A,HNRNPA1L2,INTS6,ITM2B,KCNRG,KPNA3,LECT1,LPAR6,MED4,MLNR,NEK3,NEK5,NUDT15,OLFM4,PCDH8,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUCLA2,SUGT1,THSD1,TRIM13,UTP14C,VPS36,WDFY2"
TCGA.CM.5862	13	48696143	62454600	3612	1.2177	LARGE-GAIN	NONFOCAL	48	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,CYSLTR2,DHRS12,DIAPH3,DLEU7,EBPL,FAM124A,FNDC3A,HNRNPA1L2,INTS6,ITM2B,KCNRG,KPNA3,LECT1,LPAR6,MLNR,NEK3,NEK5,OLFM4,PCDH17,PCDH20,PCDH8,PHF11,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUGT1,TDRD3,THSD1,TRIM13,UTP14C,VPS36,WDFY2"
TCGA.AA.3941	13	49679156	50714080	185	1.0223	LARGE-GAIN	NONFOCAL	13	"ARL11,CAB39L,CDADC1,EBPL,FNDC3A,KCNRG,KPNA3,MLNR,PHF11,RCBTB1,SETDB2,SPRYD7,TRIM13"
TCGA.AA.3973	13	50819593	97313733	14059	0.8389	LARGE-GAIN	NONFOCAL	72	"ABCC4,ALG11,ATP7B,BORA,CCDC70,CKAP2,CLDN10,CLN5,COMMD6,DACH1,DCT,DHRS12,DIAPH3,DIS3,DLEU7,DNAJC3,DZIP1,EDNRB,FAM124A,FBXL3,GPC5,GPC6,GPR180,HNRNPA1L2,HS6ST3,INTS6,IRG1,KCTD12,KLF12,KLF5,KLHL1,LECT1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,NEK3,NEK5,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RBM26,RNASEH2B,RNF219,SCEL,SERPINE3,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,SUGT1,TBC1D4,TDRD3,TGDS,THSD1,UCHL3,UGGT2,UTP14C,VPS36,WDFY2"
TCGA.AA.3509.01A	13	51956131	53617192	141	1.0358	LARGE-GAIN	NONFOCAL	17	"ALG11,ATP7B,CCDC70,CKAP2,DHRS12,HNRNPA1L2,INTS6,LECT1,NEK3,NEK5,OLFM4,PCDH8,SUGT1,THSD1,UTP14C,VPS36,WDFY2"
TCGA.AA.3941	13	52077992	53482110	260	0.8645	LARGE-GAIN	NONFOCAL	15	"ALG11,ATP7B,CCDC70,CKAP2,DHRS12,HNRNPA1L2,LECT1,NEK3,NEK5,PCDH8,SUGT1,THSD1,UTP14C,VPS36,WDFY2"
TCGA.AA.A02H.01A	13	53049041	101726813	768	0.8683	LARGE-GAIN	NONFOCAL	77	"ABCC4,BORA,CKAP2,CLDN10,CLN5,CLYBL,COMMD6,DACH1,DCT,DIAPH3,DIS3,DNAJC3,DOCK9,DZIP1,EDNRB,FARP1,FBXL3,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HNRNPA1L2,HS6ST3,IPO5,IRG1,KCTD12,KLF12,KLF5,KLHL1,LECT1,LMO7,LMO7DN,MBNL2,MYCBP2,MZT1,NALCN,NDFIP2,OLFM4,OXGR1,PCCA,PCDH17,PCDH20,PCDH8,PCDH9,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,SUGT1,TBC1D4,TDRD3,TGDS,TM9SF2,TMTC4,UBAC2,UCHL3,UGGT2,ZIC2,ZIC5"
TCGA.CK.5914.01A	13	53216602	72204656	100	1.2518	LARGE-GAIN	NONFOCAL	17	"DACH1,DIAPH3,HNRNPA1L2,KLHL1,LECT1,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,SUGT1,TDRD3"
TCGA.AA.A00N.01A	13	53602920	72204656	77	0.8921	LARGE-GAIN	NONFOCAL	13	"DACH1,DIAPH3,KLHL1,OLFM4,PCDH17,PCDH20,PCDH9,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.AA.3975	13	54272103	97333863	13065	0.9849	LARGE-GAIN	NONFOCAL	51	"ABCC4,BORA,CLDN10,CLN5,COMMD6,DACH1,DCT,DIAPH3,DIS3,DNAJC3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,HS6ST3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH17,PCDH20,PCDH9,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TDRD3,TGDS,UCHL3,UGGT2"
TCGA.EI.6509	13	54679863	115106995	20381	1.0407	LARGE-GAIN	NONFOCAL	127	Too-Many
TCGA.DY.A1DF	13	55879790	115106995	20057	1.3836	LARGE-GAIN	NONFOCAL	127	Too-Many
TCGA.AD.6888	13	57223572	115106995	19780	0.7815	LARGE-GAIN	NONFOCAL	127	Too-Many
TCGA.F5.6863	13	58605260	115106995	19537	0.754	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.G4.6294	13	61358369	115106995	18700	1.1298	LARGE-GAIN	NONFOCAL	119	Too-Many
TCGA.AA.3667	13	64244495	83935839	6410	0.7314	LARGE-GAIN	NONFOCAL	27	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH9,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AA.3549	13	64244495	115106995	17953	1.0286	LARGE-GAIN	NONFOCAL	118	Too-Many
TCGA.AZ.4308	13	65180413	82417110	5777	0.7621	LARGE-GAIN	NONFOCAL	27	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH9,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AA.3524	13	66563637	95614922	9379	0.7819	LARGE-GAIN	NONFOCAL	36	"BORA,CLN5,COMMD6,DACH1,DCT,DIS3,EDNRB,FBXL3,GPC5,GPC6,GPR180,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH9,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3"
TCGA.AA.3679	13	68898855	86318115	5907	0.9402	LARGE-GAIN	NONFOCAL	27	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SPRY2,TBC1D4,UCHL3"
TCGA.A6.6649	13	69234018	115106995	16600	0.861	LARGE-GAIN	NONFOCAL	117	Too-Many
TCGA.G4.6310	13	69269118	115106995	16592	0.7614	LARGE-GAIN	NONFOCAL	117	Too-Many
TCGA.DY.A1DC	13	69675702	81988481	4363	0.7153	LARGE-GAIN	NONFOCAL	26	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AZ.6606	13	70762935	115106995	16065	1.131	LARGE-GAIN	NONFOCAL	116	Too-Many
TCGA.F5.6571	13	71023479	82080433	3967	0.9407	LARGE-GAIN	NONFOCAL	25	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.DY.A0XA	13	71136181	76608728	2099	0.8203	LARGE-GAIN	NONFOCAL	12	"BORA,COMMD6,DACH1,DIS3,KLF12,KLF5,LMO7,LMO7DN,MZT1,PIBF1,TBC1D4,UCHL3"
TCGA.A6.2680	13	71285665	115106995	15899	0.8173	LARGE-GAIN	NONFOCAL	116	Too-Many
TCGA.CA.6715	13	71865949	86662041	5034	0.8298	LARGE-GAIN	NONFOCAL	27	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK6,SPRY2,TBC1D4,UCHL3"
TCGA.AZ.4684.01A	13	72133931	95714921	365	0.7105	LARGE-GAIN	NONFOCAL	35	"ABCC4,BORA,CLN5,COMMD6,DACH1,DCT,DIS3,EDNRB,FBXL3,GPC5,GPC6,GPR180,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3"
TCGA.AA.3509.01A	13	72133931	98645114	487	1.3075	LARGE-GAIN	NONFOCAL	44	"ABCC4,BORA,CLDN10,CLN5,COMMD6,DACH1,DCT,DIS3,DNAJC3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,HS6ST3,IPO5,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MBNL2,MYCBP2,MZT1,NDFIP2,OXGR1,PIBF1,POU4F1,RAP2A,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3,UGGT2"
TCGA.AA.3561	13	72277307	115106995	15659	0.9301	LARGE-GAIN	NONFOCAL	116	Too-Many
TCGA.AA.A02E.01A	13	73366566	110862269	874	0.869	LARGE-GAIN	NONFOCAL	77	"ABCC4,ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLN5,CLYBL,COL4A1,COMMD6,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EDNRB,EFNB2,ERCC5,FAM155A,FARP1,FBXL3,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,IRG1,IRS2,ITGBL1,KCTD12,KDELC1,KLF12,KLF5,LIG4,LMO7,LMO7DN,MBNL2,METTL21C,MYCBP2,MYO16,NALCN,NDFIP2,OXGR1,PCCA,PIBF1,POU4F1,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TBC1D4,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UCHL3,UGGT2,ZIC2,ZIC5"
TCGA.CM.5862	13	74574177	80267950	2146	1.4367	LARGE-GAIN	NONFOCAL	18	"CLN5,COMMD6,EDNRB,FBXL3,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,TBC1D4,UCHL3"
TCGA.AA.3972	13	74611940	97313733	7275	1.0851	LARGE-GAIN	NONFOCAL	34	"ABCC4,CLDN10,CLN5,COMMD6,DCT,DNAJC3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,HS6ST3,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3,UGGT2"
TCGA.AG.3909.01A	13	77619466	86368066	170	0.7069	LARGE-GAIN	NONFOCAL	11	"EDNRB,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK6,SPRY2"
TCGA.CM.5862	13	80374674	115106995	12528	1.4197	LARGE-GAIN	NONFOCAL	92	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,SPRY2,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AZ.4308	13	85138379	104890033	6878	0.7383	LARGE-GAIN	NONFOCAL	45	"ABCC4,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,ERCC5,FARP1,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,SLITRK5,SLITRK6,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.3693	13	86480979	115106995	10753	0.9863	LARGE-GAIN	NONFOCAL	89	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.A6.2681	13	86616580	115106995	10704	0.9197	LARGE-GAIN	NONFOCAL	89	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.CA.6715	13	86988609	107095810	7359	0.8239	LARGE-GAIN	NONFOCAL	45	"ABCC4,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DAOA,DCT,DNAJC3,DOCK9,DZIP1,ERCC5,FARP1,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.A6.6142	13	93676317	115106995	8751	0.8145	LARGE-GAIN	NONFOCAL	87	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3667	13	94085808	111584452	7508	0.7397	LARGE-GAIN	NONFOCAL	58	"ABCC4,ABHD13,ANKRD10,ARGLU1,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CLDN10,CLYBL,COL4A1,COL4A2,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPC6,GPR18,GPR180,GPR183,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LIG4,MBNL2,METTL21C,MYO16,NALCN,OXGR1,PCCA,RAB20,RAP2A,RNF113B,SLC10A2,SLC15A1,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.DY.A1DC	13	94185295	97313733	1079	0.6815	LARGE-GAIN	NONFOCAL	11	"ABCC4,CLDN10,DCT,DNAJC3,DZIP1,GPC6,GPR180,HS6ST3,SOX21,TGDS,UGGT2"
TCGA.F5.6571	13	94228745	102045733	2795	0.9166	LARGE-GAIN	NONFOCAL	31	"ABCC4,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,FARP1,GGACT,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,MBNL2,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC15A1,SOX21,STK24,TGDS,TM9SF2,TMTC4,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AZ.4682	13	94621431	100384102	2024	0.7472	LARGE-GAIN	NONFOCAL	25	"ABCC4,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,FARP1,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,MBNL2,OXGR1,RAP2A,RNF113B,SLC15A1,SOX21,STK24,TGDS,TM9SF2,UBAC2,UGGT2"
TCGA.AA.3867	13	95014769	102188076	2578	0.8324	LARGE-GAIN	NONFOCAL	32	"ABCC4,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,FARP1,GGACT,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,MBNL2,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC15A1,SOX21,STK24,TGDS,TM9SF2,TMTC4,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.3681	13	95575724	105805700	4083	0.7396	LARGE-GAIN	NONFOCAL	37	"ABCC4,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DNAJC3,DOCK9,DZIP1,ERCC5,FARP1,FGF14,GGACT,GPR18,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,STK24,TEX30,TM9SF2,TMTC4,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.3524	13	95636193	115106995	7929	0.7585	LARGE-GAIN	NONFOCAL	82	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3975	13	97359150	115106995	7412	1.0652	LARGE-GAIN	NONFOCAL	77	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.DY.A1DC	13	97376922	108595346	4852	0.698	LARGE-GAIN	NONFOCAL	36	"ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLYBL,DAOA,DOCK9,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPR18,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,STK24,TEX30,TM9SF2,TMTC4,TPP2,UBAC2,ZIC2,ZIC5"
TCGA.AA.3972	13	97382369	115106995	7413	1.1602	LARGE-GAIN	NONFOCAL	77	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3973	13	97382369	115106995	7417	0.8934	LARGE-GAIN	NONFOCAL	77	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.CI.6622	13	98538298	115106995	7026	0.6843	LARGE-GAIN	NONFOCAL	73	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3941	13	98570761	101452413	1025	0.9897	LARGE-GAIN	NONFOCAL	16	"CLYBL,DOCK9,FARP1,GGACT,GPR18,GPR183,IPO5,PCCA,RNF113B,SLC15A1,STK24,TM9SF2,TMTC4,UBAC2,ZIC2,ZIC5"
TCGA.AA.A00L.01A	13	98637633	115089311	706	0.787	LARGE-GAIN	NONFOCAL	73	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3509.01A	13	98649732	101735395	228	0.9386	LARGE-GAIN	NONFOCAL	17	"CLYBL,DOCK9,FARP1,GGACT,GPR18,GPR183,IPO5,NALCN,PCCA,RNF113B,SLC15A1,STK24,TM9SF2,TMTC4,UBAC2,ZIC2,ZIC5"
TCGA.AA.3967.01A	13	99853648	110861115	322	1.0349	LARGE-GAIN	NONFOCAL	32	"ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLYBL,COL4A1,DAOA,EFNB2,ERCC5,FAM155A,FGF14,GGACT,GPR18,GPR183,IRS2,ITGBL1,KDELC1,LIG4,METTL21C,MYO16,NALCN,PCCA,SLC10A2,TEX30,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,ZIC2,ZIC5"
TCGA.AZ.4682	13	100389731	115106995	6332	0.7511	LARGE-GAIN	NONFOCAL	63	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GGACT,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UPF3A,ZIC2,ZIC5"
TCGA.EI.6881	13	100389731	115106995	6310	0.7089	LARGE-GAIN	NONFOCAL	63	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GGACT,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UPF3A,ZIC2,ZIC5"
TCGA.AG.A01L.01A	13	101707615	106142144	144	0.9176	LARGE-GAIN	NONFOCAL	13	"BIVM,BIVM-ERCC5,CCDC168,DAOA,ERCC5,FGF14,ITGBL1,KDELC1,METTL21C,NALCN,SLC10A2,TEX30,TPP2"
TCGA.F5.6571	13	102188076	104716085	1208	0.9085	LARGE-GAIN	NONFOCAL	11	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,FGF14,ITGBL1,KDELC1,METTL21C,SLC10A2,TEX30,TPP2"
TCGA.AA.3867	13	102203127	115106995	5611	0.7323	LARGE-GAIN	NONFOCAL	56	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TMCO3,TMEM255B,TNFSF13B,TPP2,TUBGCP3,UPF3A"
TCGA.AA.A02H.01A	13	103399590	110831580	126	0.9631	LARGE-GAIN	NONFOCAL	17	"ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,COL4A1,DAOA,EFNB2,ERCC5,FAM155A,IRS2,KDELC1,LIG4,MYO16,SLC10A2,TEX30,TNFSF13B"
TCGA.AA.3509.01A	13	103418703	108861671	64	1.0989	LARGE-GAIN	NONFOCAL	11	"ARGLU1,BIVM,BIVM-ERCC5,DAOA,EFNB2,ERCC5,FAM155A,KDELC1,LIG4,SLC10A2,TEX30"
TCGA.AA.A00F.01A	13	103473364	110862269	120	0.7587	LARGE-GAIN	NONFOCAL	14	"ABHD13,ARGLU1,BIVM,BIVM-ERCC5,COL4A1,DAOA,EFNB2,ERCC5,FAM155A,IRS2,LIG4,MYO16,SLC10A2,TNFSF13B"
TCGA.DM.A1HA	13	104960817	115106995	4308	0.8221	LARGE-GAIN	NONFOCAL	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.NH.A50T	13	105038398	115106995	4251	0.7511	LARGE-GAIN	NONFOCAL	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AZ.4308	13	105452464	115106995	4062	0.7435	LARGE-GAIN	NONFOCAL	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.3681	13	105810792	114249806	3766	0.7477	LARGE-GAIN	NONFOCAL	36	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,CARKD,CARS2,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GRTP1,ING1,IRS2,LAMP1,LIG4,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TNFSF13B,TUBGCP3"
TCGA.CA.6715	13	107098061	115106995	3232	0.8339	LARGE-GAIN	NONFOCAL	44	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AG.A01L.01A	13	107145389	115089311	417	1.1996	LARGE-GAIN	NONFOCAL	44	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.F5.6571	13	108364926	112982750	2102	0.934	LARGE-GAIN	NONFOCAL	16	"ABHD13,ANKRD10,ARHGEF7,CARKD,CARS2,COL4A1,COL4A2,FAM155A,ING1,IRS2,LIG4,MYO16,RAB20,SOX1,TEX29,TNFSF13B"
TCGA.A6.6650	13	108392504	115106995	2457	0.8502	LARGE-GAIN	NONFOCAL	42	"ABHD13,ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AG.A00C.01A	13	108884100	114107502	320	0.6966	LARGE-GAIN	NONFOCAL	28	"ABHD13,ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,CARKD,CARS2,COL4A1,COL4A2,CUL4A,F10,F7,GRTP1,ING1,IRS2,LAMP1,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,SOX1,SPACA7,TEX29,TNFSF13B,TUBGCP3"
TCGA.AA.3941	13	109531515	115106995	2066	0.961	LARGE-GAIN	NONFOCAL	38	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AZ.6605	13	110100930	113371937	1436	1.7667	LARGE-GAIN	NONFOCAL	15	"ANKRD10,ARHGEF7,ATP11A,ATP11AUN,CARKD,CARS2,COL4A1,COL4A2,ING1,IRS2,RAB20,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.AA.A00D.01A	13	110861700	115089311	299	0.7887	LARGE-GAIN	NONFOCAL	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.A00F.01A	13	110863976	115089311	305	1.0656	LARGE-GAIN	NONFOCAL	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.3509.01A	13	111274591	115089311	359	0.7191	LARGE-GAIN	NONFOCAL	33	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.3967.01A	13	111279754	115089311	309	1.0752	LARGE-GAIN	NONFOCAL	33	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AG.A016.01A	13	111298267	113793643	128	0.7388	LARGE-GAIN	NONFOCAL	13	"ANKRD10,ARHGEF7,ATP11A,ATP11AUN,CARS2,F10,F7,ING1,MCF2L,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.AA.3667	13	111592779	115106995	1058	0.7653	LARGE-GAIN	NONFOCAL	29	"ADPRHL1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.F5.6571	13	112988593	115106995	527	0.9336	LARGE-GAIN	NONFOCAL	26	"ADPRHL1,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SPACA7,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.A6.3810.01A	13	113030648	115089311	296	1.019	LARGE-GAIN	NONFOCAL	26	"ADPRHL1,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SPACA7,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AZ.4684.01A	14	19573088	20528205	13	0.9234	LARGE-GAIN	NONFOCAL	13	"OR11H2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4Q3,POTEG,POTEM"
TCGA.AA.3979	14	20224002	20986230	245	0.6822	LARGE-GAIN	NONFOCAL	24	"APEX1,CCNB1IP1,KLHL33,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OSGEP,PARP2,PNP,RNASE10,TEP1,TMEM55B,TTC5"
TCGA.AA.3941	14	23004709	23942534	272	0.7745	LARGE-GAIN	NONFOCAL	33	"ABHD4,ACIN1,AJUBA,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CMTM5,DAD1,EFS,HAUS4,HOMEZ,IL25,LRP10,MMP14,MRPL52,MYH6,MYH7,NGDN,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A7,SLC7A8"
TCGA.AA.3941	14	24525273	24954165	139	0.7333	LARGE-GAIN	NONFOCAL	35	"ADCY4,CBLN3,CHMP4A,CIDEB,CPNE6,DCAF11,DHRS1,EMC9,FITM1,GMPR2,IPO4,IRF9,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.AA.3941	14	50017290	50796943	184	0.7764	LARGE-GAIN	NONFOCAL	15	"ARF6,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SOS2,VCPKMT"
TCGA.AA.A00D.01A	14	50044452	51131860	146	0.7458	LARGE-GAIN	NONFOCAL	18	"ARF6,ATL1,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MAP4K5,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SAV1,SOS2,VCPKMT"
TCGA.A6.3808.01A	14	60758042	62188200	68	0.9216	LARGE-GAIN	NONFOCAL	11	"C14orf39,HIF1A,MNAT1,PPM1A,PRKCH,SIX1,SIX4,SIX6,SLC38A6,TMEM30B,TRMT5"
TCGA.AA.3941	14	63897278	65926768	531	0.7406	LARGE-GAIN	NONFOCAL	20	"AKAP5,CHURC1,CHURC1-FNTB,ESR2,FNTB,FUT8,GPX2,HSPA2,MAX,MTHFD1,PLEKHG3,PPP1R36,PPP2R5E,RAB15,SGPP1,SPTB,SYNE2,WDR89,ZBTB1,ZBTB25"
TCGA.AA.3941	14	67595343	68456452	230	0.7154	LARGE-GAIN	NONFOCAL	15	"ARG2,ATP6V1D,EIF2S1,FAM71D,GPHN,MPP5,PIGH,PLEK2,PLEKHH1,RAD51B,RDH11,RDH12,TMEM229B,VTI1B,ZFYVE26"
TCGA.AA.3941	14	72689357	76624546	1203	0.6869	LARGE-GAIN	NONFOCAL	54	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ALDH6A1,AREL1,BATF,C14orf1,C14orf169,CCDC176,COQ6,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,HEATR4,IFT43,ISCA2,JDP2,LIN52,LTBP2,MLH3,NEK9,NPC2,NUMB,PAPLN,PGF,PNMA1,PROX2,PSEN1,PTGR2,RBM25,RGS6,RPS6KL1,SYNDIG1L,TGFB3,TMED10,TTLL5,VRTN,VSX2,YLPM1,ZC2HC1C,ZFYVE1,ZNF410"
TCGA.AA.3941	14	76734187	78410425	656	0.6943	LARGE-GAIN	NONFOCAL	23	"ADCK1,AHSA1,ALKBH1,ANGEL1,C14orf178,CIPC,ESRRB,GSTZ1,IRF2BPL,ISM2,LRRC74A,NGB,NOXRED1,POMT2,SAMD15,SLIRP,SNW1,SPTLC2,TMED8,TMEM63C,VASH1,VIPAS39,ZDHHC22"
TCGA.AA.3941	14	99559025	101385354	534	0.7381	LARGE-GAIN	NONFOCAL	17	"BCL11B,BEGAIN,CCDC85C,CCNK,CYP46A1,DEGS2,DLK1,EML1,EVL,HHIPL1,RTL1,SETD3,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AA.3941	14	101911710	106000230	661	0.8248	LARGE-GAIN	NONFOCAL	55	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.A00D.01A	14	103601507	104381356	43	0.9355	LARGE-GAIN	NONFOCAL	12	"APOPT1,BAG5,C14orf2,CKB,EIF5,KLC1,MARK3,PPP1R13B,TNFAIP2,TRMT61A,XRCC3,ZFYVE21"
TCGA.AA.A00L.01A	15	43831617	44853164	119	0.7801	LARGE-GAIN	NONFOCAL	16	"CASC4,CATSPER2,CKMT1A,CKMT1B,CTDSPL2,EIF3J,ELL3,FRMD5,HYPK,MFAP1,PDIA3,PPIP5K1,SERF2,SERINC4,STRC,WDR76"
TCGA.AA.3681	15	77884025	95904063	6346	0.7822	LARGE-GAIN	NONFOCAL	120	Too-Many
TCGA.AH.6643	15	88981478	91429041	758	1.2256	LARGE-GAIN	NONFOCAL	36	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,HAPLN3,IDH2,IQGAP1,ISG20,KIF7,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,PEX11A,PLIN1,POLG,RHCG,RLBP1,SEMA4B,TICRR,WDR93,ZNF710,ZNF774"
TCGA.D5.6538	15	90335787	96308946	2527	0.8382	LARGE-GAIN	NONFOCAL	30	"ANPEP,AP3S2,ARPIN,BLM,C15orf32,C15orf38-AP3S2,CHD2,CIB1,CRTC3,FAM174B,FES,FURIN,GDPGP1,HDDC3,IDH2,IQGAP1,MAN2A2,MCTP2,NGRN,PRC1,RCCD1,RGMA,SEMA4B,SLCO3A1,ST8SIA2,SV2B,UNC45A,VPS33B,ZNF710,ZNF774"
TCGA.AA.3681	15	95927727	102400036	2549	0.7453	LARGE-GAIN	NONFOCAL	25	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.D5.6538	15	97326193	102400036	1999	0.7961	LARGE-GAIN	NONFOCAL	24	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AG.3605.01A	16	72880	685583	11	1.4153	LARGE-GAIN	NONFOCAL	28	"ARHGDIG,AXIN1,C16orf13,CAPN15,DECR2,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,MRPL28,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,SNRNP25,TMEM8A,WFIKKN1"
TCGA.AA.A00Z.01A	16	72880	776716	18	2.1212	LARGE-GAIN	NONFOCAL	39	"ARHGDIG,AXIN1,C16orf13,CAPN15,CCDC78,DECR2,FAM173A,FAM195A,FBXL16,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LUC7L,METRN,MPG,MRPL28,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,SNRNP25,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.AA.3844	16	91009	2370038	353	0.7714	LARGE-GAIN	NONFOCAL	106	Too-Many
TCGA.AA.3941	16	91009	5360633	1065	0.9128	LARGE-GAIN	NONFOCAL	188	Too-Many
TCGA.AG.A01W.01A	16	541297	723250	60	0.7941	LARGE-GAIN	NONFOCAL	11	"C16orf13,CAPN15,FAM195A,NHLRC4,PIGQ,PRR35,RAB11FIP3,RAB40C,RHOT2,WDR90,WFIKKN1"
TCGA.AM.5820	16	677853	901173	21	1.2998	LARGE-GAIN	NONFOCAL	21	"C16orf13,CCDC78,CHTF18,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,JMJD8,METRN,MSLN,NARFL,PRR25,RAB40C,RHBDL1,RHOT2,RPUSD1,STUB1,WDR24,WDR90,WFIKKN1"
TCGA.AG.3605.01A	16	1269934	2029823	23	0.6933	LARGE-GAIN	NONFOCAL	37	"BAIAP3,C16orf91,CACNA1H,CCDC154,CLCN7,CRAMP1L,EME2,FAHD1,GNPTG,HAGH,HN1L,HS3ST6,IFT140,IGFALS,MAPK8IP3,MEIOB,MRPS34,MSRB1,NDUFB10,NME3,NOXO1,NUBP2,PTX4,RNF151,RPL3L,RPS2,SPSB3,TBL3,TELO2,TMEM204,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL"
TCGA.AA.A00Z.01A	16	1388885	2052941	24	0.6947	LARGE-GAIN	NONFOCAL	34	"BAIAP3,C16orf91,CCDC154,CLCN7,CRAMP1L,EME2,FAHD1,GFER,GNPTG,HAGH,HN1L,HS3ST6,IFT140,IGFALS,MAPK8IP3,MEIOB,MRPS34,MSRB1,NDUFB10,NME3,NOXO1,NUBP2,PTX4,RNF151,RPL3L,RPS2,SPSB3,SYNGR3,TBL3,TELO2,TMEM204,TSR3,UNKL,ZNF598"
TCGA.AM.5820	16	1947258	2237548	28	1.0008	LARGE-GAIN	NONFOCAL	19	"CASKIN1,GFER,HS3ST6,MSRB1,NDUFB10,NOXO1,NPW,NTHL1,PKD1,RAB26,RNF151,RPL3L,RPS2,SLC9A3R2,SYNGR3,TBL3,TRAF7,TSC2,ZNF598"
TCGA.AA.A00Z.01A	16	2069886	2489687	25	1.4556	LARGE-GAIN	NONFOCAL	17	"ABCA3,BRICD5,CASKIN1,CCNF,DNASE1L2,E4F1,ECI1,MLST8,NPW,NTHL1,PGP,PKD1,RAB26,RNPS1,SLC9A3R2,TRAF7,TSC2"
TCGA.AA.3844	16	2446020	5360633	696	0.6791	LARGE-GAIN	NONFOCAL	82	"ADCY9,ALG1,AMDHD2,ANKS3,ATP6V0C,C16orf59,C16orf71,C16orf89,C16orf90,C16orf96,CCDC64B,CCNF,CDIP1,CEMP1,CLDN6,CLDN9,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,EEF2KMT,FLYWCH1,FLYWCH2,GLIS2,GLYR1,HCFC1R1,HMOX2,IL32,KCTD5,KREMEN2,MEFV,MGRN1,MMP25,MTRNR2L4,NAA60,NAGPA,NLRC3,NMRAL1,NTN3,NUDT16L1,OR1F1,OR2C1,PAM16,PAQR4,PDPK1,PKMYT1,PPL,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,ROGDI,SEC14L5,SEPT12,SLX4,SMIM22,SRL,SRRM2,TBC1D24,TCEB2,TFAP4,THOC6,TIGD7,TNFRSF12A,TRAP1,UBALD1,UBN1,VASN,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF500,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AG.3909.01A	16	7101985	10837643	116	0.7867	LARGE-GAIN	NONFOCAL	14	"ABAT,ATF7IP2,C16orf72,CARHSP1,EMP2,GRIN2A,METTL22,NUBP1,PMM2,RBFOX1,TEKT5,TMEM114,TMEM186,USP7"
TCGA.T9.A92H	16	10402691	12877510	1100	0.8751	LARGE-GAIN	NONFOCAL	23	"ATF7IP2,CIITA,CLEC16A,CPPED1,DEXI,EMP2,GSPT1,LITAF,NUBP1,PRM1,PRM2,PRM3,RMI2,RSL1D1,SNN,SNX29,SOCS1,TEKT5,TNFRSF17,TNP2,TVP23A,TXNDC11,ZC3H7A"
TCGA.AA.3941	16	10822174	13008715	996	0.7859	LARGE-GAIN	NONFOCAL	21	"CIITA,CLEC16A,CPPED1,DEXI,GSPT1,LITAF,NUBP1,PRM1,PRM2,PRM3,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TNFRSF17,TNP2,TVP23A,TXNDC11,ZC3H7A"
TCGA.AA.A00Q.01A	16	11260233	15802606	164	0.7436	LARGE-GAIN	NONFOCAL	35	"BFAR,C16orf45,CLEC16A,CPPED1,ERCC4,GSPT1,KIAA0430,LITAF,MKL2,MPV17L,MYH11,NDE1,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,PARN,PDXDC1,PLA2G10,PRM1,PRM2,PRM3,RMI2,RRN3,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TNFRSF17,TNP2,TXNDC11,ZC3H7A"
TCGA.AG.3909.01A	16	11857286	15091590	146	0.7586	LARGE-GAIN	NONFOCAL	17	"BFAR,CPPED1,ERCC4,GSPT1,MKL2,NOMO1,NPIPA1,NPIPA2,NPIPA3,PARN,PDXDC1,PLA2G10,RSL1D1,SHISA9,SNX29,TNFRSF17,ZC3H7A"
TCGA.AA.3941	16	14333078	16633360	324	0.8999	LARGE-GAIN	NONFOCAL	23	"ABCC1,ABCC6,BFAR,C16orf45,FOPNL,KIAA0430,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,PARN,PDXDC1,PLA2G10,RRN3"
TCGA.T9.A92H	16	15186079	16633360	250	0.8809	LARGE-GAIN	NONFOCAL	14	"ABCC1,ABCC6,C16orf45,FOPNL,KIAA0430,MPV17L,MYH11,NDE1,NOMO3,NPIPA5,NPIPA7,NPIPA8,PDXDC1,RRN3"
TCGA.AA.A02W.01A	16	18540786	22360975	499	0.7355	LARGE-GAIN	NONFOCAL	46	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,C16orf52,C16orf62,CCP110,CDR2,CLEC19A,COQ7,CRYM,DCUN1D3,DNAH3,EEF2K,ERI2,GDE1,GP2,GPR139,GPRC5B,IGSF6,IQCK,ITPRIPL2,KNOP1,LOC81691,LYRM1,METTL9,NOMO2,NPIPB3,OTOA,PDILT,PDZD9,POLR3E,RPS15A,SMG1,SYT17,THUMPD1,TMC5,TMC7,TMEM159,UMOD,UQCRC2,VWA3A,ZP2"
TCGA.T9.A92H	16	18822929	31075707	2988	0.7262	LARGE-GAIN	NONFOCAL	164	Too-Many
TCGA.AA.3941	16	20737883	25607730	1117	0.6811	LARGE-GAIN	NONFOCAL	46	"ACSM3,ANKS4B,AQP8,ARHGAP17,C16orf52,CACNG3,CDR2,CHP2,COG7,CRYM,DCTN5,DCUN1D3,DNAH3,EARS2,EEF2K,ERI2,ERN2,GGA2,HS3ST2,IGSF6,LCMT1,LOC81691,LYRM1,METTL9,NDUFAB1,NPIPB3,NPIPB5,OTOA,PALB2,PDZD9,PLK1,POLR3E,PRKCB,RBBP6,SCNN1B,SCNN1G,SLC5A11,THUMPD1,TMEM159,TNRC6A,UBFD1,UQCRC2,USP31,VWA3A,ZKSCAN2,ZP2"
TCGA.AA.3952	16	26243263	28837514	834	1.7123	LARGE-GAIN	NONFOCAL	22	"APOBR,ATXN2L,C16orf82,CCDC101,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,IL21R,IL27,IL4R,KDM8,KIAA0556,NPIPB6,NPIPB9,NSMCE1,NUPR1,SBK1,SULT1A1,SULT1A2,XPO6"
TCGA.AA.3941	16	27076908	32483005	705	0.8159	LARGE-GAIN	NONFOCAL	120	Too-Many
TCGA.AG.3909.01A	16	27840090	28603302	56	1.0055	LARGE-GAIN	NONFOCAL	12	"APOBR,CCDC101,CLN3,EIF3C,EIF3CL,GSG1L,IL27,NPIPB6,NUPR1,SBK1,SULT1A2,XPO6"
TCGA.AA.3952	16	28837905	30423750	125	0.9932	LARGE-GAIN	NONFOCAL	48	"ALDOA,ASPHD1,ATP2A1,ATXN2L,BOLA2,BOLA2B,C16orf54,C16orf92,CD19,CD2BP2,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,LAT,MAPK3,MAZ,MVP,MYLPF,NFATC2IP,PAGR1,PPP4C,PRRT2,QPRT,RABEP2,SEPT1,SEZ6L2,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,TUFM,YPEL3,ZG16,ZNF48,ZNF771"
TCGA.AF.3913	16	29133895	31957367	269	1.2535	LARGE-GAIN	NONFOCAL	89	"AHSP,ALDOA,ARMC5,ASPHD1,BCKDK,BCL7C,BOLA2,BOLA2B,C16orf54,C16orf58,C16orf92,C16orf93,CD2BP2,CDIPT,CORO1A,COX6A2,CTF1,DCTPP1,DOC2A,FAM57B,FBRS,FBXL19,FUS,GDPD3,HIRIP3,HSD3B7,INO80E,ITGAD,ITGAL,ITGAM,ITGAX,KAT8,KCTD13,KIF22,LOC730183,MAPK3,MAZ,MVP,MYLPF,ORAI3,PAGR1,PHKG2,PPP4C,PRR14,PRRT2,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,QPRT,RNF40,SEPHS2,SEPT1,SETD1A,SEZ6L2,SLC5A2,SLX1A,SLX1B,SPN,SRCAP,STX1B,STX4,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TGFB1I1,TMEM219,TMEM265,TRIM72,VKORC1,YPEL3,ZG16,ZNF267,ZNF48,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF720,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785,ZNF843"
TCGA.G4.6303	16	29845684	30539096	44	0.7049	LARGE-GAIN	NONFOCAL	35	"ALDOA,ASPHD1,BOLA2,BOLA2B,C16orf92,CD2BP2,CDIPT,CORO1A,DCTPP1,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,ITGAL,KCTD13,MAPK3,MVP,MYLPF,PPP4C,SEPHS2,SEPT1,SEZ6L2,SLX1A,SLX1B,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,YPEL3,ZNF48,ZNF768,ZNF771"
TCGA.A6.6650	16	30352767	30772039	28	1.7777	LARGE-GAIN	NONFOCAL	22	"C16orf93,CD2BP2,DCTPP1,FBRS,ITGAL,LOC730183,MYLPF,PHKG2,PRR14,SEPHS2,SEPT1,SRCAP,TBC1D10B,TMEM265,ZNF48,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.F5.6811.01A	16	30501364	30929104	127	1.1142	LARGE-GAIN	NONFOCAL	18	"BCL7C,C16orf93,CTF1,FBRS,ITGAL,LOC730183,PHKG2,PRR14,RNF40,SRCAP,TMEM265,ZNF629,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.AA.3952	16	31348232	32482954	87	0.6975	LARGE-GAIN	NONFOCAL	12	"AHSP,ARMC5,C16orf58,COX6A2,ITGAD,ITGAX,SLC5A2,TGFB1I1,TP53TG3D,ZNF267,ZNF720,ZNF843"
TCGA.AA.A00D.01A	16	31510572	46754971	49	0.7356	LARGE-GAIN	NONFOCAL	12	"AHSP,C16orf58,MYLK3,ORC6,SHCBP1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF720"
TCGA.G4.6314	16	34924728	51774110	1392	0.8772	LARGE-GAIN	NONFOCAL	28	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,C16orf87,CBLN1,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,SALL1,SHCBP1,SIAH1,SNX20,VPS35,ZNF423"
TCGA.AA.3812	16	35139484	48560940	235	1.0309	LARGE-GAIN	NONFOCAL	14	"ABCC11,ABCC12,C16orf87,DNAJA2,GPT2,ITFG1,LONP2,MYLK3,NETO2,ORC6,PHKB,SHCBP1,SIAH1,VPS35"
TCGA.D5.6539	16	49998979	52175445	772	1.042	LARGE-GAIN	NONFOCAL	11	"ADCY7,BRD7,C16orf97,CNEP1R1,CYLD,HEATR3,NKD1,NOD2,PAPD5,SALL1,SNX20"
TCGA.AA.A00Q.01A	16	50757157	54318090	71	0.7031	LARGE-GAIN	NONFOCAL	12	"AKTIP,C16orf97,CHD9,CYLD,FTO,IRX3,LOC643802,NOD2,RBL2,RPGRIP1L,SALL1,TOX3"
TCGA.G4.6314	16	51774309	55880873	1657	1.3743	LARGE-GAIN	NONFOCAL	17	"AKTIP,C16orf97,CAPNS2,CES1,CES5A,CHD9,FTO,IRX3,IRX5,IRX6,LOC643802,LPCAT2,MMP2,RBL2,RPGRIP1L,SLC6A2,TOX3"
TCGA.AA.3941	16	56342058	58868918	738	0.7993	LARGE-GAIN	NONFOCAL	56	"ADGRG1,ADGRG3,ADGRG5,AMFR,ARL2BP,BBS2,CCDC102A,CCDC113,CCL17,CCL22,CETP,CFAP20,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,GINS3,GNAO1,GOT2,HERPUD1,KATNB1,KIFC3,LOC388282,MMP15,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,PRSS54,RSPRY1,SETD6,SLC12A3,SLC38A7,TEPP,USB1,ZNF319"
TCGA.T9.A92H	16	57117404	59149552	584	0.8732	LARGE-GAIN	NONFOCAL	36	"ADGRG1,ADGRG3,ADGRG5,ARL2BP,CCDC102A,CCDC113,CCL17,CCL22,CFAP20,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,GINS3,GOT2,KATNB1,KIFC3,LOC388282,MMP15,NDRG4,NLRC5,PLLP,POLR2C,PRSS54,RSPRY1,SETD6,SLC38A7,TEPP,USB1,ZNF319"
TCGA.AG.3909.01A	16	58312334	66413191	107	0.7182	LARGE-GAIN	NONFOCAL	12	"CCDC113,CDH11,CDH5,CDH8,CNOT1,GINS3,GOT2,LOC729159,NDRG4,PRSS54,SETD6,SLC38A7"
TCGA.AA.3941	16	66155752	70833948	762	0.8207	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.AA.3941	16	71419229	72047750	151	0.8357	LARGE-GAIN	NONFOCAL	13	"AP1G1,ATXN1L,CALB2,CHST4,DHODH,IST1,MARVELD3,PHLPP2,PKD1L3,TAT,ZNF19,ZNF23,ZNF821"
TCGA.AA.3941	16	74229152	75726135	369	0.8639	LARGE-GAIN	NONFOCAL	23	"ADAT1,BCAR1,CFDP1,CHST5,CHST6,CLEC18B,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,NPIPB15,PSMD7,RFWD3,TERF2IP,TMEM170A,TMEM231,WDR59,ZFP1,ZNRF1"
TCGA.AA.3941	16	83811202	90163274	2617	0.8437	LARGE-GAIN	NONFOCAL	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.3605.01A	16	85132770	88599928	9	1.2412	LARGE-GAIN	NONFOCAL	22	"BANP,C16orf74,C16orf95,CA5A,COX4I1,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GINS2,GSE1,IRF8,JPH3,KLHDC4,MAP1LC3B,MTHFSD,SLC7A5,ZCCHC14,ZFPM1,ZNF469"
TCGA.AM.5820	16	88773892	89256130	69	0.9989	LARGE-GAIN	NONFOCAL	11	"ACSF3,APRT,CBFA2T3,CDH15,CDT1,CTU2,GALNS,LOC100129697,PABPN1L,PIEZO1,TRAPPC2L"
TCGA.D5.6533	17	6887	2322775	469	0.8784	LARGE-GAIN	NONFOCAL	40	"ABR,BHLHA9,C17orf97,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.3968	17	6887	2416698	484	1.1589	LARGE-GAIN	NONFOCAL	40	"ABR,BHLHA9,C17orf97,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.A00Z.01A	17	13862	1583981	14	0.7909	LARGE-GAIN	NONFOCAL	24	"ABR,BHLHA9,C17orf97,CRK,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,PITPNA,PRPF8,RILP,RNMTL1,RPH3AL,SCARF1,SLC43A2,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.AA.A00Q.01A	17	2541502	3349724	28	0.7079	LARGE-GAIN	NONFOCAL	14	"CLUH,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,PAFAH1B1,RAP1GAP2,SPATA22"
TCGA.AA.3861.01A	17	2965941	3349724	17	1.5794	LARGE-GAIN	NONFOCAL	11	"OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,SPATA22"
TCGA.AA.3862.01A	17	2965941	3349724	17	1.536	LARGE-GAIN	NONFOCAL	11	"OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,SPATA22"
TCGA.A6.3808.01A	17	8659624	9923057	119	0.7048	LARGE-GAIN	NONFOCAL	12	"CFAP52,DHRS7C,GAS7,GLP2R,MFSD6L,NTN1,PIK3R5,PIK3R6,RCVRN,SPDYE4,STX8,USP43"
TCGA.4N.A93T	17	19168911	21127057	295	1.4988	LARGE-GAIN	NONFOCAL	18	"AKAP10,ALDH3A1,ALDH3A2,B9D1,CCDC144NL,CDRT15L2,DHRS7B,EPN2,LGALS9B,MAPK7,MFAP4,RNF112,SLC47A1,SLC47A2,SPECC1,TMEM11,ULK2,USP22"
TCGA.D5.6537	17	19168911	36219178	3126	0.6996	LARGE-GAIN	NONFOCAL	170	Too-Many
TCGA.AD.6888	17	19594839	21717706	274	0.8286	LARGE-GAIN	NONFOCAL	16	"AKAP10,ALDH3A1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,SLC47A2,SPECC1,TMEM11,ULK2,USP22"
TCGA.G4.6317	17	19766990	28668739	756	0.8837	LARGE-GAIN	NONFOCAL	70	"ABHD15,AKAP10,ALDOC,ANKRD13B,BLMH,C17orf51,CCDC144NL,CDRT15L2,CORO6,CRYBA1,DHRS13,DHRS7B,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LGALS9B,LYRM9,MAP2K3,MTRNR2L1,MYO18A,NARR,NATD1,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SPECC1,SSH2,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM11,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,ULK2,UNC119,USP22,VTN,WSB1"
TCGA.AA.3524	17	25313689	28444182	442	0.7655	LARGE-GAIN	NONFOCAL	52	"ABHD15,ALDOC,ANKRD13B,CORO6,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SSH2,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.CM.4746	17	25343370	27095484	281	0.7687	LARGE-GAIN	NONFOCAL	33	"ALDOC,FAM222B,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,NARR,NEK8,NLK,NOS2,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.AH.6897	17	25343370	81048658	14110	0.707	LARGE-GAIN	NONFOCAL	817	Too-Many
TCGA.AA.A02O	17	25544887	26775740	220	0.9713	LARGE-GAIN	NONFOCAL	15	"IFT20,KSR1,LGALS9,LYRM9,NLK,NOS2,POLDIP2,SARM1,SEBOX,SLC46A1,TMEM199,TMEM97,TNFAIP1,VTN,WSB1"
TCGA.AA.A00L.01A	17	25621341	26688147	66	0.8957	LARGE-GAIN	NONFOCAL	11	"IFT20,KSR1,LGALS9,LYRM9,NLK,NOS2,POLDIP2,TMEM199,TMEM97,TNFAIP1,WSB1"
TCGA.RU.A8FL	17	25757488	28905253	431	0.9326	LARGE-GAIN	NONFOCAL	57	"ABHD15,ALDOC,ANKRD13B,BLMH,CORO6,CPD,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN"
TCGA.AA.3869	17	26791740	27266142	51	1.1093	LARGE-GAIN	NONFOCAL	22	"ALDOC,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,KIAA0100,NARR,NEK8,PHF12,PIGS,PROCA1,RAB34,RPL23A,SDF2,SGK494,SLC13A2,SPAG5,SUPT6H,TLCD1,TRAF4,UNC119"
TCGA.AA.A02O	17	26905926	28523725	186	0.9622	LARGE-GAIN	NONFOCAL	33	"ABHD15,ANKRD13B,CORO6,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,GIT1,KIAA0100,MYO18A,NARR,NEK8,NSRP1,NUFIP2,PHF12,PIPOX,PROCA1,RAB34,RPL23A,SDF2,SEZ6,SGK494,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TIAF1,TLCD1,TP53I13,TRAF4"
TCGA.AA.A00L.01A	17	27027148	27492913	72	0.6948	LARGE-GAIN	NONFOCAL	17	"DHRS13,ERAL1,FAM222B,FLOT2,MYO18A,NARR,NEK8,PHF12,PIPOX,PROCA1,RAB34,RPL23A,SEZ6,SUPT6H,TIAF1,TLCD1,TRAF4"
TCGA.AA.A00L.01A	17	29221610	32688757	240	0.945	LARGE-GAIN	NONFOCAL	29	"ADAP2,ASIC2,ATAD5,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CDK5R1,COPRS,EVI2A,EVI2B,LRRC37B,MYO1D,NF1,OMG,PSMD11,RAB11FIP4,RHBDL3,RHOT1,RNF135,SPACA3,SUZ12,TEFM,TMEM98,UTP6,ZNF207"
TCGA.AA.A02O	17	30785584	37685400	2159	1.0101	LARGE-GAIN	NONFOCAL	101	Too-Many
TCGA.AA.A00L.01A	17	33255014	34136477	140	0.8498	LARGE-GAIN	NONFOCAL	22	"AP2B1,C17orf50,CCT6B,FNDC8,GAS2L2,LIG3,MMP28,NLE1,PEX12,RAD51D,RASL10B,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,UNC45B,ZNF830"
TCGA.AA.3869	17	33643162	35200552	363	0.8505	LARGE-GAIN	NONFOCAL	37	"AP2B1,C17orf50,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,DHRS11,GAS2L2,GGNBP2,HEATR9,LOC101060321,LYZL6,MMP28,MRM1,MYO19,PEX12,PIGW,RASL10B,RDM1,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.AG.3909.01A	17	34169331	34641414	59	0.7703	LARGE-GAIN	NONFOCAL	19	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,HEATR9,LOC101060321,LYZL6,RDM1,TAF15,TBC1D3F,TBC1D3H"
TCGA.AA.A00L.01A	17	34182018	34945607	69	0.9986	LARGE-GAIN	NONFOCAL	23	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,GGNBP2,HEATR9,LOC101060321,LYZL6,MYO19,PIGW,RDM1,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.CK.5914.01A	17	34344809	34641414	13	1.3731	LARGE-GAIN	NONFOCAL	11	"CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,LOC101060321,TBC1D3F,TBC1D3H"
TCGA.AD.6888	17	35051707	36824187	414	1.6834	LARGE-GAIN	NONFOCAL	24	"AATF,ACACA,ARHGAP23,C17orf78,DDX52,DUSP14,GPR179,HNF1B,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MRPL45,SOCS7,SRCIN1,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AF.3914.01A	17	35295456	36708651	179	1.8212	LARGE-GAIN	NONFOCAL	24	"AATF,ACACA,ARHGAP23,C17orf78,DDX52,DUSP14,GPR179,HNF1B,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MRPL45,SOCS7,SRCIN1,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AA.3556	17	35315227	54163635	4414	0.7653	LARGE-GAIN	NONFOCAL	359	Too-Many
TCGA.AA.3869	17	35737752	37485924	343	1.6213	LARGE-GAIN	NONFOCAL	39	"ACACA,ARHGAP23,ARL5C,C17orf78,C17orf96,C17orf98,CACNB1,CISD3,CWC25,DDX52,DUSP14,FBXL20,FBXO47,GPR179,HNF1B,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRPL45,PCGF2,PIP4K2B,PLXDC1,PSMB3,RPL19,RPL23,SOCS7,SRCIN1,STAC2,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AA.3994	17	35816615	37472595	328	1.571	LARGE-GAIN	NONFOCAL	37	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CISD3,CWC25,DDX52,DUSP14,FBXL20,FBXO47,GPR179,HNF1B,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRPL45,PCGF2,PIP4K2B,PLXDC1,PSMB3,RPL19,RPL23,SOCS7,SRCIN1,STAC2,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AA.3517	17	36022277	36425335	104	0.9777	LARGE-GAIN	NONFOCAL	11	"HNF1B,LOC101060321,LOC101060389,LOC102723859,LOC102724862,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.D5.6537	17	36220372	39908769	759	1.1818	LARGE-GAIN	NONFOCAL	131	Too-Many
TCGA.AG.3883	17	36244357	37610122	204	1.1899	LARGE-GAIN	NONFOCAL	33	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CISD3,CWC25,FBXL20,FBXO47,GPR179,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MED1,MLLT6,MRPL45,PCGF2,PIP4K2B,PLXDC1,PSMB3,RPL19,RPL23,SOCS7,SRCIN1,STAC2,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AD.6888	17	36836114	37257884	90	1.2352	LARGE-GAIN	NONFOCAL	11	"C17orf98,CISD3,CWC25,FBXO47,LASP1,MLLT6,PCGF2,PIP4K2B,PLXDC1,PSMB3,RPL23"
TCGA.AA.A00L.01A	17	36895278	37420386	79	0.9716	LARGE-GAIN	NONFOCAL	14	"ARL5C,C17orf98,CACNB1,CWC25,FBXL20,FBXO47,LASP1,PCGF2,PIP4K2B,PLXDC1,PSMB3,RPL19,RPL23,STAC2"
TCGA.CA.5254	17	36942630	38068042	170	1.2313	LARGE-GAIN	NONFOCAL	26	"ARL5C,C17orf98,CACNB1,CDK12,CWC25,ERBB2,FBXL20,FBXO47,GRB7,GSDMB,IKZF3,LASP1,MED1,MIEN1,NEUROD2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,RPL19,RPL23,STAC2,STARD3,TCAP,ZPBP2"
TCGA.AF.3914.01A	17	36971075	37686878	110	2.0575	LARGE-GAIN	NONFOCAL	13	"ARL5C,C17orf98,CACNB1,CDK12,CWC25,FBXL20,FBXO47,LASP1,MED1,PLXDC1,RPL19,RPL23,STAC2"
TCGA.AG.3898	17	37185845	37904210	99	2.584	LARGE-GAIN	NONFOCAL	17	"ARL5C,CACNB1,CDK12,ERBB2,FBXL20,GRB7,MED1,MIEN1,NEUROD2,PGAP3,PLXDC1,PNMT,PPP1R1B,RPL19,STAC2,STARD3,TCAP"
TCGA.CM.5341	17	37250307	39235234	395	0.782	LARGE-GAIN	NONFOCAL	64	"ARL5C,CACNB1,CASC3,CCR7,CDC6,CDK12,CSF3,ERBB2,FBXL20,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,LRRC3C,MED1,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PLXDC1,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,RPL19,SMARCE1,STAC2,STARD3,TCAP,THRA,TMEM99,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AF.A56L	17	37321604	37923372	67	2.3776	LARGE-GAIN	NONFOCAL	17	"ARL5C,CACNB1,CDK12,ERBB2,FBXL20,GRB7,IKZF3,MED1,MIEN1,NEUROD2,PGAP3,PNMT,PPP1R1B,RPL19,STAC2,STARD3,TCAP"
TCGA.AA.3872	17	37419316	38029119	75	2.7719	LARGE-GAIN	NONFOCAL	14	"CDK12,ERBB2,FBXL20,GRB7,IKZF3,MED1,MIEN1,NEUROD2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP,ZPBP2"
TCGA.AA.3994	17	37478061	39211907	341	1.9494	LARGE-GAIN	NONFOCAL	57	"CASC3,CCR7,CDC6,CDK12,CSF3,ERBB2,FBXL20,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP3-1,KRTAP3-2,KRTAP3-3,LRRC3C,MED1,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,SMARCE1,STARD3,TCAP,THRA,TMEM99,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AA.3869	17	37487167	38146928	85	2.1399	LARGE-GAIN	NONFOCAL	19	"CDK12,ERBB2,FBXL20,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED1,MIEN1,NEUROD2,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,STARD3,TCAP,ZPBP2"
TCGA.DM.A1D0	17	37665553	38536982	108	2.146	LARGE-GAIN	NONFOCAL	28	"CASC3,CDC6,CDK12,CSF3,ERBB2,GJD3,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,STARD3,TCAP,THRA,WIPF2,ZPBP2"
TCGA.AA.A00L.01A	17	37667740	38187356	117	0.7765	LARGE-GAIN	NONFOCAL	19	"CDK12,CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,NEUROD2,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,STARD3,TCAP,ZPBP2"
TCGA.CA.6719	17	37671489	38021651	51	0.844	LARGE-GAIN	NONFOCAL	11	"CDK12,ERBB2,GRB7,IKZF3,MIEN1,NEUROD2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.AA.A02O	17	37696234	38231852	88	2.0461	LARGE-GAIN	NONFOCAL	19	"CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,NEUROD2,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,STARD3,TCAP,THRA,ZPBP2"
TCGA.AD.6888	17	37704216	38253227	87	2.0939	LARGE-GAIN	NONFOCAL	20	"CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,NEUROD2,NR1D1,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,STARD3,TCAP,THRA,ZPBP2"
TCGA.AA.3524	17	37804857	40483465	611	0.7568	LARGE-GAIN	NONFOCAL	117	Too-Many
TCGA.AA.A02K.01A	17	37840804	38192298	101	1.0343	LARGE-GAIN	NONFOCAL	13	"CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,ORMDL3,PGAP3,PSMD3,ZPBP2"
TCGA.AF.3914.01A	17	37871478	38191110	87	2.256	LARGE-GAIN	NONFOCAL	12	"CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,ORMDL3,PSMD3,ZPBP2"
TCGA.AG.3883	17	37876766	38716560	114	1.8165	LARGE-GAIN	NONFOCAL	25	"CASC3,CCR7,CDC6,CSF3,ERBB2,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,LRRC3C,MED24,MIEN1,MSL1,NR1D1,ORMDL3,PSMD3,RAPGEFL1,RARA,THRA,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AA.3869	17	38166878	38936658	132	1.5622	LARGE-GAIN	NONFOCAL	21	"CASC3,CCR7,CDC6,CSF3,GJD3,IGFBP4,KRT222,KRT24,KRT25,KRT26,KRT27,MED24,MSL1,NR1D1,RAPGEFL1,RARA,SMARCE1,THRA,TNS4,TOP2A,WIPF2"
TCGA.AA.A02K.01A	17	38209496	38911114	170	1.3745	LARGE-GAIN	NONFOCAL	18	"CASC3,CCR7,CDC6,GJD3,IGFBP4,KRT222,KRT24,KRT25,MED24,MSL1,NR1D1,RAPGEFL1,RARA,SMARCE1,THRA,TNS4,TOP2A,WIPF2"
TCGA.CA.5254	17	38222994	39947008	469	1.28	LARGE-GAIN	NONFOCAL	80	"CASC3,CCR7,CDC6,EIF1,GAST,GJD3,HAP1,IGFBP4,JUP,KRT10,KRT12,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT39,KRT40,KRT9,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,MSL1,NR1D1,RAPGEFL1,RARA,SMARCE1,THRA,TMEM99,TNS4,TOP2A,WIPF2"
TCGA.AA.A00L.01A	17	38487422	40815348	480	0.7787	LARGE-GAIN	NONFOCAL	104	Too-Many
TCGA.AF.3914.01A	17	38545721	38955748	97	2.3623	LARGE-GAIN	NONFOCAL	11	"CCR7,IGFBP4,KRT222,KRT24,KRT25,KRT26,KRT27,KRT28,SMARCE1,TNS4,TOP2A"
TCGA.AA.3869	17	38938315	39158101	95	0.975	LARGE-GAIN	NONFOCAL	11	"KRT10,KRT12,KRT20,KRT23,KRT27,KRT28,KRT39,KRT40,KRTAP3-2,KRTAP3-3,TMEM99"
TCGA.AF.3914.01A	17	38990737	39742513	161	2.4079	LARGE-GAIN	NONFOCAL	53	"KRT12,KRT13,KRT14,KRT15,KRT19,KRT20,KRT23,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT39,KRT40,KRT9,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,TMEM99"
TCGA.AA.A01Q.01A	17	39135027	39346417	22	0.7986	LARGE-GAIN	NONFOCAL	24	"KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1"
TCGA.AF.A56L	17	39161127	39407340	92	2.4152	LARGE-GAIN	NONFOCAL	25	"KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-8"
TCGA.AA.A00N.01A	17	39253727	39471603	37	0.7588	LARGE-GAIN	NONFOCAL	21	"KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AA.A010.01A	17	39296072	39645641	78	0.9908	LARGE-GAIN	NONFOCAL	26	"KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP4-1,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AF.A56L	17	39407856	39832675	139	1.9253	LARGE-GAIN	NONFOCAL	22	"KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP9-6,KRTAP9-7,KRTAP9-9"
TCGA.D5.6537	17	39909017	44162283	767	0.723	LARGE-GAIN	NONFOCAL	115	Too-Many
TCGA.DM.A1D0	17	40426488	41367400	120	0.7793	LARGE-GAIN	NONFOCAL	38	"AARSD1,AOC2,AOC3,ATP6V0A1,BECN1,BRCA1,CCR10,CNTD1,CNTNAP1,COA3,COASY,EZH1,FAM134C,G6PC,HSD17B1,IFI35,MLX,NAGLU,NBR1,PLEKHH3,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PTRF,RAMP2,RND2,RPL27,RUNDC1,STAT3,STAT5A,STAT5B,TMEM106A,TUBG1,TUBG2,VAT1,VPS25,WNK4"
TCGA.A6.3808.01A	17	40925443	41102560	59	0.8952	LARGE-GAIN	NONFOCAL	11	"AARSD1,AOC2,AOC3,BECN1,CNTD1,COA3,G6PC,PSME3,PTGES3L-AARSD1,VPS25,WNK4"
TCGA.AA.A00L.01A	17	40951068	41165017	60	1.0347	LARGE-GAIN	NONFOCAL	12	"AARSD1,AOC2,AOC3,BECN1,CNTD1,G6PC,IFI35,PSME3,PTGES3L,PTGES3L-AARSD1,RPL27,RUNDC1"
TCGA.AA.A00L.01A	17	41584870	43319661	275	0.8425	LARGE-GAIN	NONFOCAL	47	"ACBD4,ADAM11,ASB16,ATXN7L3,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CD300LG,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,FAM171A2,FMNL1,FZD2,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,ITGA2B,KIF18B,LSM12,MEOX1,MPP2,MPP3,NAGS,NMT1,PLCD3,PPY,PYY,RUNDC3A,SLC25A39,SLC4A1,SOST,TMEM101,TMUB2,UBTF"
TCGA.D5.6537	17	44351284	46828411	427	0.7209	LARGE-GAIN	NONFOCAL	43	"ARL17A,ARL17B,CBX1,CDC27,CDK5RAP3,COPZ2,EFCAB13,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,ITGB3,KPNB1,LRRC37A,LRRC37A2,LRRC46,MRPL10,MYL4,NFE2L1,NPEPPS,NSF,OSBPL7,PNPO,PRAC1,PRAC2,PRR15L,RPRML,SCRN2,SKAP1,SNX11,SP2,SP6,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.AA.A00L.01A	17	44895825	46629352	176	0.9721	LARGE-GAIN	NONFOCAL	30	"ARL17A,CBX1,CDC27,CDK5RAP3,COPZ2,EFCAB13,GOSR2,HOXB1,HOXB2,HOXB3,ITGB3,KPNB1,LRRC46,MRPL10,MYL4,NFE2L1,NPEPPS,OSBPL7,PNPO,PRR15L,RPRML,SCRN2,SKAP1,SNX11,SP2,SP6,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.AA.A02O	17	46735519	47241603	102	1.3457	LARGE-GAIN	NONFOCAL	11	"ATP5G1,B4GALNT2,CALCOCO2,GIP,HOXB13,IGF2BP1,PRAC1,PRAC2,SNF8,TTLL6,UBE2Z"
TCGA.D5.6537	17	46831025	51084299	1183	1.1101	LARGE-GAIN	NONFOCAL	54	"ABCC3,ABI3,ACSF2,ANKRD40,ATP5G1,B4GALNT2,C17orf112,CA10,CACNA1G,CALCOCO2,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,IGF2BP1,ITGA3,KAT7,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NGFR,NME1,NME1-NME2,NME2,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,RSAD1,SAMD14,SGCA,SLC35B1,SNF8,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.AA.A00L.01A	17	47915919	56397379	477	0.8283	LARGE-GAIN	NONFOCAL	65	"ABCC3,ACSF2,AKAP1,ANKFN1,ANKRD40,BZRAP1,C17orf112,C17orf67,CA10,CACNA1G,CCDC182,CHAD,COIL,COL1A1,COX11,CUEDC1,DGKE,DLX3,DLX4,DYNLL2,EME1,EPN3,EPX,FLJ45513,HLF,ITGA3,KIF2B,LPO,LRRC59,LUC7L3,MBTD1,MKS1,MMD,MPO,MRPL27,MRPS23,MSI2,MYCBPAP,NME1,NME1-NME2,NME2,NOG,OR4D1,OR4D2,PCTP,PDK2,PPP1R9B,RSAD1,SAMD14,SCPEP1,SGCA,SPAG9,SPATA20,SRSF1,STXBP4,TAC4,TMEM100,TMEM92,TOB1,TOM1L1,TRIM25,UTP18,VEZF1,WFIKKN2,XYLT2"
TCGA.D5.6537	17	51306067	76012853	6986	0.7447	LARGE-GAIN	NONFOCAL	231	Too-Many
TCGA.AA.3556	17	54167748	64820665	2432	0.776	LARGE-GAIN	NONFOCAL	101	Too-Many
TCGA.AA.A02O	17	56226844	58579394	300	1.4432	LARGE-GAIN	NONFOCAL	34	"APPBP2,BZRAP1,C17orf47,C17orf64,CA4,CLTC,DHX40,EPX,GDPD1,HEATR6,HSF5,LPO,MKS1,MPO,MTMR4,OR4D1,OR4D2,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SEPT4,SKA2,SMG8,SUPT4H1,TEX14,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.AA.A00Z.01A	17	56833348	78215506	52	1.0868	LARGE-GAIN	NONFOCAL	224	Too-Many
TCGA.AA.3854	17	57105222	60535076	499	1.1976	LARGE-GAIN	NONFOCAL	29	"APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,CLTC,DHX40,EFCAB3,GDPD1,HEATR6,INTS2,MED13,METTL2A,NACA2,PPM1D,PRR11,PTRH2,RNFT1,RPS6KB1,SKA2,SMG8,TBX2,TBX4,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.CA.5254	17	57185806	58631571	196	1.6215	LARGE-GAIN	NONFOCAL	17	"APPBP2,C17orf64,CA4,CLTC,DHX40,GDPD1,HEATR6,PRR11,PTRH2,RNFT1,RPS6KB1,SKA2,SMG8,TUBD1,USP32,VMP1,YPEL2"
TCGA.QG.A5YW	17	57210068	81048658	6223	0.7054	LARGE-GAIN	NONFOCAL	291	Too-Many
TCGA.AA.A00L.01A	17	57697413	58740319	139	1.0451	LARGE-GAIN	NONFOCAL	12	"APPBP2,C17orf64,CA4,CLTC,HEATR6,PPM1D,PTRH2,RNFT1,RPS6KB1,TUBD1,USP32,VMP1"
TCGA.AA.A02O	17	59129883	62694737	599	1.3798	LARGE-GAIN	NONFOCAL	44	"ACE,BCAS3,BRIP1,C17orf82,CCDC47,CD79B,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FTSJ3,GH1,GH2,ICAM2,INTS2,KCNH6,LIMD2,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,PECAM1,POLG2,PRR29,PSMC5,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TBX2,TBX4,TEX2,TLK2"
TCGA.AA.3854	17	60579994	61909484	187	1.4603	LARGE-GAIN	NONFOCAL	17	"ACE,CCDC47,CYB561,DCAF7,DDX42,FTSJ3,KCNH6,LIMD2,MAP3K3,MARCH10,MRC2,PSMC5,SMARCD2,STRADA,TACO1,TANC2,TLK2"
TCGA.AF.2689	17	61227636	61909484	86	0.8043	LARGE-GAIN	NONFOCAL	14	"ACE,CCDC47,CYB561,DCAF7,DDX42,FTSJ3,KCNH6,LIMD2,MAP3K3,PSMC5,SMARCD2,STRADA,TACO1,TANC2"
TCGA.CA.5254	17	61252251	62144221	131	1.0889	LARGE-GAIN	NONFOCAL	24	"ACE,CCDC47,CD79B,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,ERN1,FTSJ3,GH1,GH2,ICAM2,KCNH6,LIMD2,MAP3K3,PRR29,PSMC5,SCN4A,SMARCD2,STRADA,TACO1,TANC2"
TCGA.AA.3854	17	61910166	65939568	1135	0.8044	LARGE-GAIN	NONFOCAL	33	"APOH,AXIN2,BPTF,CACNG1,CACNG4,CACNG5,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,DDX5,ERN1,GH1,GH2,GNA13,HELZ,ICAM2,LRRC37A3,MILR1,NOL11,PECAM1,PITPNC1,POLG2,PRKCA,PRR29,PSMD12,RGS9,SCN4A,SMARCD2,SMURF2,TEX2"
TCGA.AA.A00L.01A	17	62080065	63014300	62	0.9579	LARGE-GAIN	NONFOCAL	12	"CEP95,DDX5,ERN1,GNA13,ICAM2,LRRC37A3,MILR1,PECAM1,POLG2,PRR29,SMURF2,TEX2"
TCGA.AF.2689	17	62694737	65538501	885	0.7486	LARGE-GAIN	NONFOCAL	13	"APOH,AXIN2,CACNG1,CACNG4,CACNG5,CEP112,GNA13,HELZ,LRRC37A3,PITPNC1,PRKCA,PSMD12,RGS9"
TCGA.AA.A02O	17	63429976	65971738	789	1.4455	LARGE-GAIN	NONFOCAL	12	"APOH,AXIN2,BPTF,CACNG1,CACNG4,CACNG5,CEP112,HELZ,NOL11,PITPNC1,PRKCA,PSMD12"
TCGA.AA.A01Z	17	63683225	66022659	716	1.4775	LARGE-GAIN	NONFOCAL	12	"APOH,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CEP112,HELZ,NOL11,PITPNC1,PRKCA,PSMD12"
TCGA.AH.6643	17	64047375	66780059	850	0.7512	LARGE-GAIN	NONFOCAL	19	"AMZ2,APOH,ARSG,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CEP112,FAM20A,HELZ,KPNA2,NOL11,PITPNC1,PRKAR1A,PRKCA,PSMD12,SLC16A6,WIPI1"
TCGA.AA.3556	17	64827300	70292761	1830	0.7319	LARGE-GAIN	NONFOCAL	25	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARSG,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,FAM20A,HELZ,KCNJ16,KCNJ2,KPNA2,MAP2K6,NOL11,PITPNC1,PRKAR1A,PSMD12,SLC16A6,SOX9,WIPI1"
TCGA.A6.2677	17	64969303	81048658	4364	0.7543	LARGE-GAIN	NONFOCAL	221	Too-Many
TCGA.CA.5254	17	65034966	66344702	276	1.5979	LARGE-GAIN	NONFOCAL	11	"AMZ2,ARSG,BPTF,C17orf58,CACNG1,HELZ,KPNA2,NOL11,PITPNC1,PSMD12,SLC16A6"
TCGA.AA.A01Z	17	66062315	68644188	835	1.884	LARGE-GAIN	NONFOCAL	14	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARSG,FAM20A,KCNJ16,KCNJ2,MAP2K6,PRKAR1A,SLC16A6,WIPI1"
TCGA.AA.A00L.01A	17	66339726	72815834	413	0.8637	LARGE-GAIN	NONFOCAL	40	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ARSG,BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,COG1,CPSF4L,DNAI2,FAM104A,FAM20A,GPR142,GPRC5C,KCNJ16,KCNJ2,KIF19,LOC100134391,MAP2K6,NAT9,PRKAR1A,RAB37,RPL38,SDK2,SLC39A11,SLC9A3R1,SOX9,SSTR2,TMEM104,TTYH2,WIPI1"
TCGA.AA.A00L.01A	17	72949598	73483966	95	0.9462	LARGE-GAIN	NONFOCAL	17	"ARMC7,ATP5H,CDR2L,GGA3,GRB2,HID1,HN1,ICT1,KCTD2,KIAA0195,MIF4GD,MRPS7,NT5C,NUP85,SLC16A5,SLC25A19,SUMO2"
TCGA.AA.A00D.01A	17	72960531	73211807	39	0.6879	LARGE-GAIN	NONFOCAL	11	"ARMC7,ATP5H,CDR2L,HID1,HN1,ICT1,KCTD2,NT5C,NUP85,SLC16A5,SUMO2"
TCGA.AA.3517	17	73647365	74177385	77	1.136	LARGE-GAIN	NONFOCAL	22	"ACOX1,CDK3,EVPL,EXOC7,FBF1,FOXJ1,GALK1,GALR2,H3F3B,ITGB4,MRPL38,RECQL5,RNF157,SAP30BP,SRP68,TEN1,TRIM47,TRIM65,UNC13D,UNK,WBP2,ZACN"
TCGA.AA.A00L.01A	17	74081346	75209962	164	0.8385	LARGE-GAIN	NONFOCAL	21	"AANAT,CYGB,EXOC7,FOXJ1,JMJD6,METTL23,MFSD11,MGAT5B,MXRA7,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SEC14L1,SPHK1,SRSF2,ST6GALNAC1,ST6GALNAC2,UBALD2,UBE2O"
TCGA.D5.6537	17	76021272	79574713	921	1.0947	LARGE-GAIN	NONFOCAL	50	"AATK,ACTG1,AFMID,BAHCC1,BAIAP2,BIRC5,C17orf70,C17orf89,C17orf99,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC40,CEP131,CEP295NL,CHMP6,CYTH1,DNAH17,EIF4A3,ENDOV,ENGASE,ENPP7,ENTHD2,FSCN2,GAA,LGALS3BP,LOC100130370,NPLOC4,NPTX1,PGS1,RBFOX3,RNF213,RPTOR,SGSH,SLC26A11,SLC38A10,SOCS3,SYNGR2,TBC1D16,TIMP2,TK1,TMC6,TMC8,TMEM105,TMEM235,TNRC6C,USP36"
TCGA.D5.6537	17	79602819	81048658	217	0.7163	LARGE-GAIN	NONFOCAL	52	"ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,C17orf62,CCDC137,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FAM195B,FASN,FN3K,FN3KRP,FOXK2,GCGR,GPS1,HEXDC,HGS,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,STRA13,TBCD,TEX19,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AG.3906.01A	17	79803418	79914477	15	1.7413	LARGE-GAIN	NONFOCAL	11	"ALYREF,ANAPC11,ARHGDIA,MAFG,MYADML2,NOTUM,NPB,P4HB,PCYT2,PYCR1,SIRT7"
TCGA.AA.A00L.01A	17	80202612	81006295	84	0.8957	LARGE-GAIN	NONFOCAL	17	"B3GNTL1,C17orf62,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,NARF,OGFOD3,RAB40B,SECTM1,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A00D.01A	17	80202612	81050855	82	0.7145	LARGE-GAIN	NONFOCAL	18	"B3GNTL1,C17orf62,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,SECTM1,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AF.6672	18	100948	15215870	5720	0.9506	LARGE-GAIN	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.CM.6676	18	100948	15215870	5710	0.8648	LARGE-GAIN	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.A6.5662	18	7837859	9919964	909	1.162	LARGE-GAIN	NONFOCAL	11	"ANKRD12,MTCL1,NDUFV2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.CM.6675	18	9240412	15215870	1947	0.9361	LARGE-GAIN	NONFOCAL	34	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,NAPG,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AA.3870	18	14144452	20599125	493	0.7175	LARGE-GAIN	NONFOCAL	11	"ABHD3,ANKRD30B,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,POTEC,RBBP8,ROCK1,SNRPD1"
TCGA.AA.3664	18	37884626	48159308	3542	0.8184	LARGE-GAIN	NONFOCAL	40	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,MYO5B,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.CM.5348	18	42899938	47295987	1536	0.8149	LARGE-GAIN	NONFOCAL	29	"ATP5A1,C18orf25,C18orf32,CTIF,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,PIAS2,PSTPIP2,RNF165,RPL17,RPL17-C18orf32,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AZ.4614	18	68752769	75152118	2894	0.6923	LARGE-GAIN	NONFOCAL	18	"C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,GALR1,MBP,NETO1,SMIM21,TIMM21,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AM.5820	19	412729	1175395	69	1.0768	LARGE-GAIN	NONFOCAL	34	"ABCA7,ARID3A,AZU1,BSG,CDC34,CFD,CNN2,ELANE,FGF22,FSTL3,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MISP,ODF3L2,PALM,POLR2E,POLRMT,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SBNO2,SHC2,TMEM259,TPGS1,WDR18"
TCGA.AG.3906.01A	19	610211	1004520	31	0.7326	LARGE-GAIN	NONFOCAL	20	"ARID3A,AZU1,CFD,ELANE,FGF22,FSTL3,GRIN3B,HCN2,KISS1R,LPPR3,MED16,MISP,PALM,POLRMT,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,WDR18"
TCGA.AA.A00Z.01A	19	709073	5649861	65	1.4043	LARGE-GAIN	NONFOCAL	144	Too-Many
TCGA.AM.5820	19	1376722	1676840	23	0.9156	LARGE-GAIN	NONFOCAL	15	"ADAMTSL5,APC2,C19orf25,DAZAP1,GAMT,MBD3,MEX3D,MUM1,NDUFS7,PCSK4,PLK5,REEP6,RPS15,TCF3,UQCR11"
TCGA.AM.5820	19	1784210	2498446	73	0.7875	LARGE-GAIN	NONFOCAL	26	"ABHD17A,ADAT3,AMH,AP3D1,ATP8B3,BTBD2,C19orf35,CSNK1G2,DOT1L,GADD45B,IZUMO4,JSRP1,KLF16,LINGO3,LMNB2,LSM7,MKNK2,MOB3A,OAZ1,PLEKHJ1,REXO1,SCAMP4,SF3A2,SPPL2B,TIMM13,TMPRSS9"
TCGA.AG.A02X.01A	19	4452314	5455456	101	1.4416	LARGE-GAIN	NONFOCAL	18	"ARRDC5,DPP9,DPP9-AS1,FEM1A,HDGFRP2,KDM4B,LRG1,MYDGF,PLIN3,PLIN4,PLIN5,PTPRS,SEMA6B,TICAM1,TNFAIP8L1,UBXN6,UHRF1,ZNRF4"
TCGA.AA.3662	19	5155307	7015046	407	0.8674	LARGE-GAIN	NONFOCAL	42	"ACER1,ACSBG2,ADGRE1,ALKBH7,C19orf70,C3,CAPS,CATSPERD,CD70,CLPP,CRB3,DENND1C,DUS3L,FUT3,FUT5,FUT6,GPR108,GTF2F1,HSD11B1L,KHSRP,LONP1,MLLT1,NDUFA11,NRTN,PRR22,PSPN,PTPRS,RANBP3,RFX2,RPL36,SAFB,SAFB2,SH2D3A,SLC25A23,SLC25A41,TNFSF14,TNFSF9,TRIP10,TUBB4A,VAV1,VMAC,ZNRF4"
TCGA.AZ.6606	19	6454188	12577722	1148	0.8812	LARGE-GAIN	NONFOCAL	169	Too-Many
TCGA.A6.3808.01A	19	8610481	9270742	140	1.087	LARGE-GAIN	NONFOCAL	12	"ACTL9,ADAMTS10,MBD3L1,MUC16,MYO1F,OR1M1,OR2Z1,OR7G1,OR7G2,OR7G3,ZNF317,ZNF558"
TCGA.AA.A00Q.01A	19	9212915	9929171	62	0.7942	LARGE-GAIN	NONFOCAL	20	"FBXL12,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,ZNF121,ZNF177,ZNF266,ZNF317,ZNF426,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.A6.3808.01A	19	11464409	11664795	76	0.8307	LARGE-GAIN	NONFOCAL	12	"CCDC151,CCDC159,CNN1,ECSIT,ELAVL3,ELOF1,EPOR,LPPR2,PRKCSH,RGL3,SWSAP1,ZNF653"
TCGA.AA.A00D.01A	19	11657432	12774083	97	0.7925	LARGE-GAIN	NONFOCAL	28	"ACP5,CNN1,ELOF1,MAN2B1,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF627,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.AA.A00Q.01A	19	11727461	12429366	48	0.8732	LARGE-GAIN	NONFOCAL	17	"ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF491,ZNF563,ZNF625,ZNF627,ZNF69,ZNF700,ZNF763,ZNF823,ZNF844,ZNF878"
TCGA.AA.A02E.01A	19	13427899	14153213	72	1.0857	LARGE-GAIN	NONFOCAL	13	"C19orf53,C19orf57,CACNA1A,CC2D1A,CCDC130,DCAF15,IL27RA,MRI1,NANOS3,PODNL1,RFX1,RLN3,ZSWIM4"
TCGA.AA.A00Q.01A	19	14682664	15197840	74	0.7094	LARGE-GAIN	NONFOCAL	13	"ADGRE2,ADGRE3,CASP14,CCDC105,CLEC17A,NDUFB7,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,ZNF333"
TCGA.AA.3861.01A	19	14829018	15349123	83	0.8871	LARGE-GAIN	NONFOCAL	16	"ADGRE2,BRD4,CASP14,CCDC105,EPHX3,ILVBL,NOTCH3,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,SYDE1,ZNF333"
TCGA.AA.3862.01A	19	14829018	15349863	88	0.79	LARGE-GAIN	NONFOCAL	16	"ADGRE2,BRD4,CASP14,CCDC105,EPHX3,ILVBL,NOTCH3,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,SYDE1,ZNF333"
TCGA.F4.6704	19	15308067	15762937	80	0.9525	LARGE-GAIN	NONFOCAL	11	"AKAP8,AKAP8L,BRD4,CYP4F22,CYP4F3,CYP4F8,EPHX3,NOTCH3,PGLYRP2,RASAL3,WIZ"
TCGA.AA.A010.01A	19	15636106	16044969	63	0.7879	LARGE-GAIN	NONFOCAL	11	"CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H5"
TCGA.AA.3861.01A	19	15732978	16212024	59	0.7265	LARGE-GAIN	NONFOCAL	12	"CYP4F11,CYP4F12,CYP4F2,CYP4F3,CYP4F8,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,TPM4"
TCGA.AA.3952	19	16485828	17180146	136	0.8268	LARGE-GAIN	NONFOCAL	13	"C19orf44,CALR3,CHERP,CPAMD8,EPS15L1,F2RL3,HAUS8,MED26,NWD1,SIN3B,SLC35E1,SMIM7,TMEM38A"
TCGA.D5.6541	19	17111673	18612350	237	0.8666	LARGE-GAIN	NONFOCAL	50	"ABHD8,ANKLE1,ANO8,ARRDC2,B3GNT3,BABAM1,BST2,CCDC124,COLGALT1,CPAMD8,DDA1,ELL,FAM129C,FCHO1,GDF15,GTPBP3,HAUS8,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,LRRC25,LSM4,MAP1S,MAST3,MPV17L2,MRPL34,MVB12A,MYO9B,NR2F6,NXNL1,OCEL1,PDE4C,PGLS,PGPEP1,PIK3R2,PLVAP,RAB3A,RPL18A,SLC27A1,SLC5A5,SSBP4,TMEM221,UNC13A,USE1,USHBP1"
TCGA.AG.3906.01A	19	17351450	17571460	57	0.6913	LARGE-GAIN	NONFOCAL	14	"ABHD8,ANKLE1,ANO8,BABAM1,BST2,DDA1,GTPBP3,MRPL34,MVB12A,NR2F6,NXNL1,PLVAP,TMEM221,USHBP1"
TCGA.AA.A00Q.01A	19	19932321	35435480	383	0.7538	LARGE-GAIN	NONFOCAL	72	"ANKRD27,C19orf12,C19orf40,CCNE1,CEBPA,CEBPG,CEP89,CHST8,DPY19L3,GPATCH1,GPI,KCTD15,KIAA0355,LRP3,LSM14A,NUDT19,PDCD2L,PDCD5,PEPD,PLEKHF1,POP4,RGS9BP,RHPN2,SCGB2B2,SLC7A10,SLC7A9,TDRD12,THEG5,TSHZ3,UBA2,UQCRFS1,URI1,VSTM2B,WDR88,WTIP,ZNF100,ZNF181,ZNF208,ZNF253,ZNF254,ZNF257,ZNF30,ZNF302,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF507,ZNF536,ZNF599,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AA.A00K.01A	19	20002246	52725315	3178	0.7268	LARGE-GAIN	NONFOCAL	607	Too-Many
TCGA.AA.A02E.01A	19	23941470	30934442	33	0.88	LARGE-GAIN	NONFOCAL	11	"C19orf12,CCNE1,PLEKHF1,POP4,UQCRFS1,URI1,VSTM2B,ZNF254,ZNF536,ZNF681,ZNF726"
TCGA.AD.6888	19	27828663	33013505	1694	1.2466	LARGE-GAIN	NONFOCAL	12	"C19orf12,CCNE1,DPY19L3,PLEKHF1,POP4,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,ZNF507,ZNF536"
TCGA.AA.3502	19	27828663	38981538	2942	0.799	LARGE-GAIN	NONFOCAL	145	Too-Many
TCGA.D5.6537	19	27828663	51328092	5112	0.7088	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.DM.A0X9	19	27828663	59095125	7350	0.8427	LARGE-GAIN	NONFOCAL	782	Too-Many
TCGA.AU.3779	19	31271929	34404755	975	0.9843	LARGE-GAIN	NONFOCAL	22	"ANKRD27,C19orf40,CEBPA,CEBPG,CEP89,CHST8,DPY19L3,GPATCH1,KCTD15,LRP3,NUDT19,PDCD5,PEPD,RGS9BP,RHPN2,SLC7A10,SLC7A9,TDRD12,THEG5,TSHZ3,WDR88,ZNF507"
TCGA.A6.3807	19	32355273	33775867	395	1.0486	LARGE-GAIN	NONFOCAL	15	"ANKRD27,C19orf40,CEP89,DPY19L3,GPATCH1,LRP3,NUDT19,PDCD5,RGS9BP,RHPN2,SLC7A10,SLC7A9,TDRD12,WDR88,ZNF507"
TCGA.AG.A01Y	19	32877124	37247471	997	0.7684	LARGE-GAIN	NONFOCAL	100	"ALKBH6,ANKRD27,APLP1,ARHGAP33,ATP4A,C19orf40,CAPNS1,CD22,CEBPA,CEBPG,CEP89,CHST8,CLIP3,COX6B1,COX7A1,DMKN,DPY19L3,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GPATCH1,GPI,GRAMD1A,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KCTD15,KIAA0355,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LRFN3,LRP3,LSM14A,LSR,MAG,NFKBID,NPHS1,NUDT19,OVOL3,PDCD2L,PDCD5,PEPD,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,RGS9BP,RHPN2,SBSN,SCGB2B2,SCN1B,SDHAF1,SLC7A10,SLC7A9,SYNE4,TBCB,TDRD12,THAP8,TMEM147,TYROBP,U2AF1L4,UBA2,UPK1A,USF2,WDR62,WDR88,WTIP,ZBTB32,ZFP14,ZFP82,ZNF146,ZNF181,ZNF260,ZNF30,ZNF302,ZNF382,ZNF461,ZNF507,ZNF529,ZNF565,ZNF566,ZNF567,ZNF599,ZNF792,ZNF850"
TCGA.A6.3807	19	33776240	37338863	781	0.729	LARGE-GAIN	NONFOCAL	87	"ALKBH6,APLP1,ARHGAP33,ATP4A,CAPNS1,CD22,CEBPA,CEBPG,CHST8,CLIP3,COX6B1,COX7A1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GPI,GRAMD1A,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KCTD15,KIAA0355,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LOC728485,LRFN3,LSM14A,LSR,MAG,NFKBID,NPHS1,OVOL3,PDCD2L,PEPD,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SCGB2B2,SCN1B,SDHAF1,SYNE4,TBCB,THAP8,TMEM147,TYROBP,U2AF1L4,UBA2,UPK1A,USF2,WDR62,WTIP,ZBTB32,ZFP14,ZFP82,ZNF146,ZNF181,ZNF260,ZNF30,ZNF302,ZNF382,ZNF461,ZNF529,ZNF565,ZNF566,ZNF567,ZNF599,ZNF790,ZNF792,ZNF850"
TCGA.AA.3662	19	34967798	36825457	390	0.6977	LARGE-GAIN	NONFOCAL	67	"ALKBH6,APLP1,ARHGAP33,ATP4A,CAPNS1,CD22,CLIP3,COX6B1,COX7A1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GRAMD1A,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LRFN3,LSR,MAG,NFKBID,NPHS1,OVOL3,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SCGB2B2,SCN1B,SDHAF1,SYNE4,TBCB,THAP8,TMEM147,TYROBP,U2AF1L4,UPK1A,USF2,WDR62,WTIP,ZBTB32,ZFP14,ZNF146,ZNF181,ZNF30,ZNF302,ZNF565,ZNF599,ZNF792"
TCGA.AA.A00Q.01A	19	36692782	38375531	100	0.8001	LARGE-GAIN	NONFOCAL	32	"HKR1,LOC728485,WDR87,ZFP14,ZFP30,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF565,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AA.3872	19	37086644	38135045	133	2.8605	LARGE-GAIN	NONFOCAL	22	"HKR1,LOC728485,ZFP30,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF585A,ZNF585B,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AA.3502	19	38994075	39817099	149	1.1226	LARGE-GAIN	NONFOCAL	27	"ACTN4,CAPN12,CCER2,ECH1,EIF3K,FBXO17,FBXO27,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,LGALS4,LGALS7,LGALS7B,LRFN1,MAP4K1,MRPS12,NCCRP1,NFKBIB,PAK4,PAPL,RINL,RYR1,SARS2,SIRT2,SYCN"
TCGA.AA.3967.01A	19	39334417	39660143	54	0.774	LARGE-GAIN	NONFOCAL	11	"CCER2,FBXO17,FBXO27,HNRNPL,MRPS12,NFKBIB,PAK4,PAPL,RINL,SARS2,SIRT2"
TCGA.AA.A02E.01A	19	39575858	39880719	50	1.4684	LARGE-GAIN	NONFOCAL	12	"GMFG,IFNL1,IFNL2,IFNL3,IFNL4,LRFN1,NCCRP1,PAF1,PAK4,PAPL,SAMD4B,SYCN"
TCGA.AA.3502	19	39818390	59095125	4254	0.7928	LARGE-GAIN	NONFOCAL	611	Too-Many
TCGA.AA.A02E.01A	19	39888125	40330819	73	1.5735	LARGE-GAIN	NONFOCAL	17	"CLC,DLL3,DYRK1B,EID2,EID2B,FBL,LEUTX,LGALS13,LGALS14,LGALS16,MED29,PLEKHG2,RPS16,SELV,SUPT5H,TIMM50,ZFP36"
TCGA.AY.6196	19	40656204	41291118	89	1.5416	LARGE-GAIN	NONFOCAL	21	"ADCK4,AKT2,BLVRB,C19orf47,C19orf54,CNTD2,HIPK4,ITPKC,LTBP4,MAP3K10,MIA,NUMBL,PLD3,PRX,RAB4B,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TTC9B"
TCGA.CK.5914.01A	19	42937076	43866221	84	0.7704	LARGE-GAIN	NONFOCAL	14	"CD177,CEACAM1,CEACAM8,CXCL17,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9"
TCGA.AA.A00Q.01A	19	43087343	43910577	58	0.7827	LARGE-GAIN	NONFOCAL	13	"CD177,CEACAM8,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TEX101"
TCGA.AA.A00Q.01A	19	44341158	44980602	68	0.8836	LARGE-GAIN	NONFOCAL	20	"ZNF112,ZNF155,ZNF180,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF45"
TCGA.AA.A010.01A	19	44466821	44721884	43	0.7981	LARGE-GAIN	NONFOCAL	11	"ZNF155,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF230,ZNF234,ZNF284"
TCGA.AG.3906.01A	19	48876746	49248855	86	0.881	LARGE-GAIN	NONFOCAL	19	"CA11,CYTH2,DBP,FAM83E,FUT2,GRIN2D,GRWD1,IZUMO1,KCNJ14,KDELR1,LMTK3,MAMSTR,NTN5,RASIP1,RPL18,SPACA4,SPHK2,SULT2B1,SYNGR4"
TCGA.AA.3967.01A	19	50314582	50662703	73	0.7029	LARGE-GAIN	NONFOCAL	13	"AKT1S1,ATF5,FUZ,IL4I1,IZUMO2,MED25,NUP62,PNKP,PTOV1,SIGLEC11,TBC1D17,VRK3,ZNF473"
TCGA.D5.6537	19	51339206	59095125	2205	0.7034	LARGE-GAIN	NONFOCAL	254	Too-Many
TCGA.AA.A00A.01A	19	52728926	54261458	139	0.7292	LARGE-GAIN	NONFOCAL	34	"BIRC8,DPRX,ERVV-1,ERVV-2,PPP2R1A,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845,ZNF880"
TCGA.AA.A00K.01A	19	52728926	54301449	151	1.2294	LARGE-GAIN	NONFOCAL	35	"BIRC8,DPRX,ERVV-1,ERVV-2,NLRP12,PPP2R1A,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845,ZNF880"
TCGA.AA.A00D.01A	19	52785002	54245757	136	0.782	LARGE-GAIN	NONFOCAL	33	"BIRC8,DPRX,ERVV-1,ERVV-2,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845,ZNF880"
TCGA.AA.3967.01A	19	52785002	54385436	169	0.8057	LARGE-GAIN	NONFOCAL	35	"BIRC8,DPRX,ERVV-1,ERVV-2,MYADM,NLRP12,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845,ZNF880"
TCGA.AA.A00Q.01A	19	52785323	53993697	92	0.7409	LARGE-GAIN	NONFOCAL	31	"BIRC8,ERVV-1,ERVV-2,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845,ZNF880"
TCGA.AA.A00L.01A	19	52819075	54299092	145	0.8121	LARGE-GAIN	NONFOCAL	33	"BIRC8,DPRX,ERVV-1,ERVV-2,NLRP12,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845,ZNF880"
TCGA.AA.A00K.01A	19	54304442	54722950	109	0.7977	LARGE-GAIN	NONFOCAL	19	"CACNG6,CACNG7,CACNG8,CNOT3,LENG1,LILRB3,MBOAT7,MYADM,NDUFA3,NLRP12,OSCAR,PRKCG,PRPF31,RPS9,TARM1,TFPT,TMC4,TSEN34,VSTM1"
TCGA.A6.3808.01A	19	54327108	54613373	55	0.7414	LARGE-GAIN	NONFOCAL	11	"CACNG6,CACNG7,CACNG8,MYADM,NDUFA3,NLRP12,OSCAR,PRKCG,TARM1,TFPT,VSTM1"
TCGA.AA.3967.01A	19	54501433	54695935	65	0.6987	LARGE-GAIN	NONFOCAL	12	"CACNG6,CNOT3,LENG1,MBOAT7,NDUFA3,OSCAR,PRPF31,TARM1,TFPT,TMC4,TSEN34,VSTM1"
TCGA.AA.A00K.01A	19	55246668	58965558	453	0.7989	LARGE-GAIN	NONFOCAL	129	Too-Many
TCGA.AG.3906.01A	19	55800796	56133129	35	0.8436	LARGE-GAIN	NONFOCAL	22	"BRSK1,COX6B2,FAM71E2,FIZ1,IL11,ISOC2,NAT14,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,TMEM150B,TMEM190,TMEM238,UBE2S,ZNF524,ZNF579,ZNF628,ZNF784,ZNF865"
TCGA.AA.A010.01A	19	57716713	58483763	131	0.7374	LARGE-GAIN	NONFOCAL	35	"AURKC,C19orf18,VN1R1,ZIK1,ZNF134,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF304,ZNF416,ZNF417,ZNF418,ZNF419,ZNF460,ZNF530,ZNF543,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF586,ZNF587,ZNF587B,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF805,ZNF814,ZSCAN4"
TCGA.F5.6811.01A	20	16282	26011512	1429	1.0163	LARGE-GAIN	NONFOCAL	177	Too-Many
TCGA.AA.A01C.01A	20	68282	1291412	94	0.7117	LARGE-GAIN	NONFOCAL	27	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AA.A02W.01A	20	68282	5922553	489	0.7308	LARGE-GAIN	NONFOCAL	89	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3967.01A	20	68282	13260234	755	0.7276	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.AH.6549.01A	20	68282	14474038	882	0.6909	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.AY.A54L.01A	20	68282	21369846	1234	0.7368	LARGE-GAIN	NONFOCAL	144	Too-Many
TCGA.A6.3810.01A	20	68282	25596530	1430	0.7859	LARGE-GAIN	NONFOCAL	176	Too-Many
TCGA.AG.A00Y.01A	20	68282	57042131	3409	0.7278	LARGE-GAIN	NONFOCAL	448	Too-Many
TCGA.AA.A00K.01A	20	68282	62904524	3595	0.7121	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.DM.A282.01A	20	68282	62904524	4539	0.7486	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.A6.6654	20	69407	605322	194	1.1588	LARGE-GAIN	NONFOCAL	15	"C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,NRSN2,RBCK1,SOX12,TBC1D20,TCF15,TRIB3,ZCCHC3"
TCGA.AD.A5EK	20	69407	927456	390	1.1176	LARGE-GAIN	NONFOCAL	20	"ANGPT4,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,RBCK1,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TRIB3,ZCCHC3"
TCGA.DY.A1DD	20	69407	1543408	666	0.9464	LARGE-GAIN	NONFOCAL	31	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB2,SIRPD,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.A6.6142	20	69407	2514557	1141	0.8184	LARGE-GAIN	NONFOCAL	41	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,LOC388780,NRSN2,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMEM74B,TRIB3,ZCCHC3,ZNF343"
TCGA.DC.4745	20	69407	4775638	2017	0.7078	LARGE-GAIN	NONFOCAL	80	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PRND,PRNP,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3846	20	69407	7305576	3118	0.7583	LARGE-GAIN	NONFOCAL	94	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AZ.6603	20	69407	7794074	3303	0.7415	LARGE-GAIN	NONFOCAL	94	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.G4.6310	20	69407	11641955	5067	0.7574	LARGE-GAIN	NONFOCAL	105	Too-Many
TCGA.A6.2679	20	69407	13898177	5951	0.7549	LARGE-GAIN	NONFOCAL	112	Too-Many
TCGA.F4.6460	20	69407	14086210	5999	0.998	LARGE-GAIN	NONFOCAL	113	Too-Many
TCGA.AA.3712	20	69407	14206267	6024	0.7668	LARGE-GAIN	NONFOCAL	113	Too-Many
TCGA.AA.3968	20	69407	14215600	6023	0.8087	LARGE-GAIN	NONFOCAL	113	Too-Many
TCGA.G4.6294	20	69407	14587503	6128	0.7324	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.DM.A0X9	20	69407	14686296	6153	0.9499	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3688	20	69407	14721126	6173	0.8224	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.5M.AATE	20	69407	14739572	6173	1.0782	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.G4.6311	20	69407	14758472	6183	0.7435	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.CA.6715	20	69407	14762102	6157	0.8687	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.A6.5659	20	69407	14797571	5696	1.0894	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.DC.5337	20	69407	14876099	6192	0.7859	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.NH.A50T	20	69407	14897589	6186	0.8094	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.A6.6652	20	69407	14940686	6249	0.7334	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.CA.6719	20	69407	16251764	6999	0.7658	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.CA.5256	20	69407	37001630	12356	0.6863	LARGE-GAIN	NONFOCAL	290	Too-Many
TCGA.D5.6922	20	69407	37757724	12626	0.7015	LARGE-GAIN	NONFOCAL	298	Too-Many
TCGA.AA.3856	20	69407	42170326	14454	0.7475	LARGE-GAIN	NONFOCAL	308	Too-Many
TCGA.AA.3494	20	69407	44049482	15046	0.9236	LARGE-GAIN	NONFOCAL	345	Too-Many
TCGA.CM.5864	20	69407	58300638	20777	0.7848	LARGE-GAIN	NONFOCAL	459	Too-Many
TCGA.AA.3973	20	69407	62912462	22437	0.936	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3976	20	69407	62912462	22436	0.7973	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.AF.6655	20	69407	62912462	22408	0.694	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.CA.5797	20	69407	62912462	22421	0.7279	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.CM.6166	20	69407	62912462	22444	0.7187	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.CM.6677	20	69407	62912462	22342	0.7349	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.DC.5869	20	69407	62912462	22369	0.9113	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.EI.6885	20	69407	62912462	22412	0.8789	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.G4.6297	20	69407	62912462	22438	0.7047	LARGE-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3982	20	213422	902001	320	0.7902	LARGE-GAIN	NONFOCAL	15	"ANGPT4,C20orf96,CSNK2A1,DEFB132,FAM110A,NRSN2,RBCK1,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TRIB3,ZCCHC3"
TCGA.AA.3941	20	213422	1217572	461	0.9786	LARGE-GAIN	NONFOCAL	20	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB132,FAM110A,NRSN2,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.A6.6782	20	236991	4710444	1885	0.7869	LARGE-GAIN	NONFOCAL	74	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PRND,PRNP,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.A6.6654	20	605421	4234780	1500	0.7557	LARGE-GAIN	NONFOCAL	62	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,CDC25B,CENPB,CPXM1,DDRGK1,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SPEF1,SRXN1,STK35,TGM3,TGM6,TMC2,TMEM239,TMEM74B,UBOX5,VPS16,ZNF343"
TCGA.AA.3982	20	912625	4402636	1424	0.7202	LARGE-GAIN	NONFOCAL	57	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,CDC25B,CENPB,CPXM1,DDRGK1,EBF4,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RNF24,RSPO4,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SMOX,SNPH,SNRPB,SPEF1,STK35,TGM3,TGM6,TMC2,TMEM239,TMEM74B,UBOX5,VPS16,ZNF343"
TCGA.AD.A5EK	20	932617	6614968	2371	0.8412	LARGE-GAIN	NONFOCAL	73	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RNF24,RSPO4,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SMOX,SNPH,SNRPB,SPEF1,STK35,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.AA.3941	20	1230184	2072834	389	0.7623	LARGE-GAIN	NONFOCAL	11	"FKBP1A,NSFL1C,PDYN,RAD21L1,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SNPH"
TCGA.AA.A01C.01A	20	1298913	39791528	2234	0.7468	LARGE-GAIN	NONFOCAL	275	Too-Many
TCGA.AA.A00N.01A	20	1471886	2604870	81	0.961	LARGE-GAIN	NONFOCAL	13	"LOC388780,PDYN,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SNRPB,STK35,TGM3,TGM6,TMC2,ZNF343"
TCGA.AA.A00O.01A	20	1514983	6021668	401	0.7708	LARGE-GAIN	NONFOCAL	62	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,FASTKD5,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PTPRA,RASSF2,RNF24,SIGLEC1,SIRPA,SIRPB1,SIRPD,SIRPG,SLC23A2,SLC4A11,SMOX,SNRPB,SPEF1,STK35,TGM3,TGM6,TMC2,TMEM230,TMEM239,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.AA.A00L.01A	20	1600466	2639343	84	0.9153	LARGE-GAIN	NONFOCAL	13	"IDH3B,LOC388780,NOP56,PDYN,SIRPA,SIRPB1,SIRPG,SNRPB,STK35,TGM3,TGM6,TMC2,ZNF343"
TCGA.G4.6303	20	2046771	3385072	515	1.1509	LARGE-GAIN	NONFOCAL	27	"AVP,C20orf141,C20orf194,CPXM1,DDRGK1,EBF4,FASTKD5,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,OXT,PCED1A,PTPRA,SLC4A11,SNRPB,STK35,TGM3,TGM6,TMC2,TMEM239,UBOX5,VPS16,ZNF343"
TCGA.AA.3941	20	2074921	4235593	790	1.0291	LARGE-GAIN	NONFOCAL	42	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf27,CDC25B,CENPB,CPXM1,DDRGK1,EBF4,FASTKD5,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,OXT,PANK2,PCED1A,PTPRA,RNF24,SIGLEC1,SLC4A11,SMOX,SNRPB,SPEF1,STK35,TGM3,TGM6,TMC2,TMEM239,UBOX5,VPS16,ZNF343"
TCGA.AG.A00C.01A	20	2635028	3202429	86	0.7054	LARGE-GAIN	NONFOCAL	18	"AVP,C20orf141,CPXM1,DDRGK1,EBF4,FASTKD5,GNRH2,IDH3B,ITPA,LZTS3,MRPS26,NOP56,OXT,PCED1A,PTPRA,TMEM239,UBOX5,VPS16"
TCGA.A6.6142	20	2722363	62912462	21194	0.804	LARGE-GAIN	NONFOCAL	483	Too-Many
TCGA.AA.A00L.01A	20	2944859	3627318	89	0.8241	LARGE-GAIN	NONFOCAL	13	"ATRN,AVP,C20orf194,DDRGK1,FASTKD5,GNRH2,ITPA,LZTS3,MRPS26,OXT,PTPRA,SLC4A11,UBOX5"
TCGA.A6.5656	20	3447223	3862207	122	0.7624	LARGE-GAIN	NONFOCAL	11	"ADAM33,AP5S1,ATRN,C20orf27,CDC25B,CENPB,GFRA4,HSPA12B,MAVS,SIGLEC1,SPEF1"
TCGA.AA.3685	20	3474710	4352921	334	0.9801	LARGE-GAIN	NONFOCAL	15	"ADAM33,ADRA1D,AP5S1,ATRN,C20orf27,CDC25B,CENPB,GFRA4,HSPA12B,MAVS,PANK2,RNF24,SIGLEC1,SMOX,SPEF1"
TCGA.AA.A00L.01A	20	3778985	5166350	84	0.9603	LARGE-GAIN	NONFOCAL	14	"ADRA1D,AP5S1,CDC25B,CDS2,MAVS,PANK2,PCNA,PRND,PRNP,RASSF2,RNF24,SLC23A2,SMOX,TMEM230"
TCGA.A6.5656	20	3868751	6651020	1229	0.9918	LARGE-GAIN	NONFOCAL	20	"ADRA1D,C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,PANK2,PCNA,PRND,PRNP,PROKR2,RASSF2,RNF24,SLC23A2,SMOX,TMEM230,TRMT6"
TCGA.DC.4745	20	4780748	11730157	3067	0.7178	LARGE-GAIN	NONFOCAL	26	"ANKEF1,BMP2,C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,HAO1,JAG1,LAMP5,LRRN4,MCM8,MKKS,PAK7,PCNA,PLCB1,PLCB4,PROKR2,RASSF2,SLC23A2,SLX4IP,SNAP25,TMEM230,TMX4,TRMT6"
TCGA.AA.3869	20	5542091	8845199	1476	0.7858	LARGE-GAIN	NONFOCAL	12	"BMP2,C20orf196,CHGB,CRLS1,FERMT1,GPCPD1,HAO1,LRRN4,MCM8,PLCB1,TMX4,TRMT6"
TCGA.AA.A00L.01A	20	5958485	17594746	297	0.8944	LARGE-GAIN	NONFOCAL	32	"ANKEF1,BFSP1,BMP2,BTBD3,CRLS1,DSTN,ESF1,FERMT1,FLRT3,HAO1,ISM1,JAG1,KIF16B,LAMP5,LRRN4,MACROD2,MCM8,MKKS,NDUFAF5,OTOR,PAK7,PCSK2,PLCB1,PLCB4,RRBP1,SEL1L2,SLX4IP,SNAP25,SNRPB2,SPTLC3,TASP1,TMX4"
TCGA.AA.3685	20	6932219	13676151	2973	0.9426	LARGE-GAIN	NONFOCAL	15	"ANKEF1,BTBD3,HAO1,ISM1,JAG1,LAMP5,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25,SPTLC3,TASP1,TMX4"
TCGA.A6.5656	20	7149874	11975030	2136	0.7816	LARGE-GAIN	NONFOCAL	12	"ANKEF1,BTBD3,HAO1,JAG1,LAMP5,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25,TMX4"
TCGA.AA.3846	20	7308537	11379841	1843	0.7245	LARGE-GAIN	NONFOCAL	11	"ANKEF1,HAO1,JAG1,LAMP5,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25,TMX4"
TCGA.AZ.6603	20	7801753	62912462	19102	1.0912	LARGE-GAIN	NONFOCAL	433	Too-Many
TCGA.AA.3846	20	11385102	25433820	5915	0.7249	LARGE-GAIN	NONFOCAL	70	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,BTBD3,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,ESF1,FLRT3,FOXA2,GGTLC1,GINS1,GZF1,INSM1,ISM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NDUFAF5,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SNRPB2,SNX5,SPTLC3,SSTR4,SYNDIG1,TASP1,THBD,VSX1,XRN2,ZNF133"
TCGA.AA.3967.01A	20	13604056	62904524	3293	0.7601	LARGE-GAIN	NONFOCAL	419	Too-Many
TCGA.AG.4009.01A	20	13773739	19679175	226	1.0018	LARGE-GAIN	NONFOCAL	26	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,FLRT3,KIF16B,MACROD2,MGME1,NDUFAF5,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.A6.2679	20	14415227	62912462	16366	0.767	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.F4.6460	20	14501383	54620122	13057	0.7397	LARGE-GAIN	NONFOCAL	311	Too-Many
TCGA.QG.A5YV	20	14921233	20008580	2565	0.9514	LARGE-GAIN	NONFOCAL	25	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,NAA20,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.DC.5337	20	14940686	37001630	6170	0.7871	LARGE-GAIN	NONFOCAL	177	Too-Many
TCGA.NH.A50T	20	14945838	23148376	3691	0.7713	LARGE-GAIN	NONFOCAL	38	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,FOXA2,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NKX2-2,NKX2-4,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.AA.3858	20	15020017	62912462	16177	0.7	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.G4.6310	20	15101479	39029026	6833	0.8145	LARGE-GAIN	NONFOCAL	185	Too-Many
TCGA.AA.3712	20	15101479	62912462	16114	0.7326	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.A6.5659	20	15106977	62912462	15008	1.0819	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.A6.6652	20	15118512	62912462	16113	0.733	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.5M.AATE	20	15160751	48199998	10250	1.0516	LARGE-GAIN	NONFOCAL	282	Too-Many
TCGA.AA.3968	20	15216864	59527665	15096	0.8585	LARGE-GAIN	NONFOCAL	351	Too-Many
TCGA.CA.6715	20	15216864	62912462	16007	0.8545	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.DC.4745	20	15219032	59111044	14874	0.7018	LARGE-GAIN	NONFOCAL	351	Too-Many
TCGA.AA.3971	20	15239468	29598226	4591	0.8261	LARGE-GAIN	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.G4.6294	20	15274881	62912462	16048	0.7011	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.G4.6311	20	15283417	41240851	7634	0.7281	LARGE-GAIN	NONFOCAL	193	Too-Many
TCGA.AH.6549.01A	20	15411965	62904524	3643	0.7901	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.AA.3688	20	15565139	62912462	15888	0.8416	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.DM.A0X9	20	15695939	52643154	11524	0.7106	LARGE-GAIN	NONFOCAL	307	Too-Many
TCGA.DM.A28F	20	15721258	62912462	15756	0.6792	LARGE-GAIN	NONFOCAL	414	Too-Many
TCGA.AG.4015	20	15765166	47369446	9665	1.0863	LARGE-GAIN	NONFOCAL	275	Too-Many
TCGA.AD.A5EK	20	15886293	23938337	3530	1.4664	LARGE-GAIN	NONFOCAL	51	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.G4.6626	20	16063342	52643154	11305	0.7429	LARGE-GAIN	NONFOCAL	306	Too-Many
TCGA.CA.6719	20	16257483	62912462	15388	0.8394	LARGE-GAIN	NONFOCAL	413	Too-Many
TCGA.DC.6157	20	16341041	30101816	3945	1.2912	LARGE-GAIN	NONFOCAL	71	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,REM1,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.D5.6923	20	16478490	18277376	847	0.8502	LARGE-GAIN	NONFOCAL	14	"BANF2,BFSP1,CSRP2BP,DSTN,KIF16B,MGME1,OTOR,OVOL2,PCSK2,PET117,RRBP1,SNRPB2,SNX5,ZNF133"
TCGA.AA.3667	20	16838277	19679994	1267	0.8027	LARGE-GAIN	NONFOCAL	19	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,MGME1,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,ZNF133"
TCGA.EI.6514	20	16944928	20639044	1677	0.9923	LARGE-GAIN	NONFOCAL	25	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,MGME1,NAA20,OVOL2,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,ZNF133"
TCGA.AA.3869	20	17086060	20378931	1536	0.7839	LARGE-GAIN	NONFOCAL	25	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,MGME1,NAA20,OVOL2,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,ZNF133"
TCGA.AA.A00L.01A	20	17622425	34025139	887	0.8632	LARGE-GAIN	NONFOCAL	129	Too-Many
TCGA.F5.6864	20	17753578	18657600	321	0.7006	LARGE-GAIN	NONFOCAL	11	"CSRP2BP,DTD1,DZANK1,MGME1,OVOL2,PET117,POLR3F,RBBP9,SEC23B,SNX5,ZNF133"
TCGA.G4.6295	20	17856899	18609601	243	0.8453	LARGE-GAIN	NONFOCAL	11	"CSRP2BP,DTD1,DZANK1,MGME1,OVOL2,PET117,POLR3F,RBBP9,SEC23B,SNX5,ZNF133"
TCGA.DM.A28E	20	17856899	62912462	14577	0.9981	LARGE-GAIN	NONFOCAL	405	Too-Many
TCGA.AG.3898	20	18251838	34467214	3910	1.0829	LARGE-GAIN	NONFOCAL	132	Too-Many
TCGA.AG.A032.01A	20	18516251	62904524	2686	0.9471	LARGE-GAIN	NONFOCAL	396	Too-Many
TCGA.CM.4750.01A	20	18794942	62904524	3472	1.0902	LARGE-GAIN	NONFOCAL	394	Too-Many
TCGA.AZ.6608	20	19025939	26232227	2705	0.8118	LARGE-GAIN	NONFOCAL	42	"ABHD12,ACSS1,APMAP,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,RIN2,SLC24A3,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF337"
TCGA.CM.4752	20	19318836	62912462	14044	0.7926	LARGE-GAIN	NONFOCAL	392	Too-Many
TCGA.F4.6808	20	19598492	62912462	13843	1.1011	LARGE-GAIN	NONFOCAL	392	Too-Many
TCGA.CL.5917	20	19646147	62912462	13794	1.1051	LARGE-GAIN	NONFOCAL	392	Too-Many
TCGA.A6.5667	20	19727037	62912462	13782	0.989	LARGE-GAIN	NONFOCAL	391	Too-Many
TCGA.A6.6140	20	19931889	29846377	2209	0.8097	LARGE-GAIN	NONFOCAL	42	"ABHD12,ACSS1,APMAP,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,RIN2,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF337"
TCGA.EI.7002	20	20082066	36947858	3520	0.7391	LARGE-GAIN	NONFOCAL	150	Too-Many
TCGA.F5.6864	20	20613021	62912462	13368	0.8457	LARGE-GAIN	NONFOCAL	386	Too-Many
TCGA.G4.6295	20	20908851	62912462	13287	0.8432	LARGE-GAIN	NONFOCAL	385	Too-Many
TCGA.AG.3882	20	21100137	61705951	12965	0.9261	LARGE-GAIN	NONFOCAL	348	Too-Many
TCGA.AA.3842	20	21261683	31630289	2054	0.7209	LARGE-GAIN	NONFOCAL	68	"ABHD12,ACSS1,APMAP,ASXL1,BCL2L1,BPIFB2,BPIFB6,C20orf203,CCM2L,CD93,COMMD7,COX4I2,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,ENTPD6,FOXA2,FOXS1,GGTLC1,GINS1,GZF1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NANP,NAPB,NINL,NKX2-2,NKX2-4,NOL4L,NXT1,PAX1,PDRG1,PLAGL2,POFUT1,PYGB,REM1,SSTR4,SUN5,SYNDIG1,THBD,TM9SF4,TPX2,TTLL9,VSX1,XKR7,XRN2,ZNF337"
TCGA.NH.A6GB	20	21302326	50746650	8149	0.8124	LARGE-GAIN	NONFOCAL	274	Too-Many
TCGA.EI.6512	20	21539072	62912462	13112	1.1021	LARGE-GAIN	NONFOCAL	381	Too-Many
TCGA.AA.3667	20	21549423	52632494	8848	1.1011	LARGE-GAIN	NONFOCAL	274	Too-Many
TCGA.G4.6306	20	21814034	62912462	13029	0.9504	LARGE-GAIN	NONFOCAL	380	Too-Many
TCGA.A6.4105	20	21820040	62912462	13035	0.9387	LARGE-GAIN	NONFOCAL	380	Too-Many
TCGA.AA.3697	20	21883959	31011936	1754	0.9817	LARGE-GAIN	NONFOCAL	56	"ABHD12,ACSS1,APMAP,ASXL1,BCL2L1,CCM2L,CD93,COX4I2,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,ENTPD6,FOXA2,FOXS1,GGTLC1,GINS1,GZF1,HCK,HM13,ID1,KIF3B,MYLK2,NANP,NAPB,NINL,NXT1,PDRG1,PLAGL2,POFUT1,PYGB,REM1,SSTR4,SYNDIG1,THBD,TM9SF4,TPX2,TTLL9,VSX1,XKR7,ZNF337"
TCGA.F4.6704	20	21997114	25473470	1438	2.0739	LARGE-GAIN	NONFOCAL	28	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,NAPB,NINL,NXT1,PYGB,SSTR4,SYNDIG1,THBD,VSX1"
TCGA.AF.A56K	20	22115728	52872214	8816	1.0828	LARGE-GAIN	NONFOCAL	275	Too-Many
TCGA.AA.3941	20	22194769	24154709	921	0.7978	LARGE-GAIN	NONFOCAL	18	"CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,FOXA2,GGTLC1,GZF1,NAPB,NXT1,SSTR4,THBD"
TCGA.CM.5868	20	22513539	62912462	12789	0.7076	LARGE-GAIN	NONFOCAL	380	Too-Many
TCGA.AA.3819	20	22567941	62912462	12778	0.72	LARGE-GAIN	NONFOCAL	379	Too-Many
TCGA.AY.4071	20	22775580	62912462	12587	1.0384	LARGE-GAIN	NONFOCAL	379	Too-Many
TCGA.AA.3693	20	22838647	62912462	12624	0.8894	LARGE-GAIN	NONFOCAL	379	Too-Many
TCGA.CM.6169	20	22938520	62912462	12514	0.9209	LARGE-GAIN	NONFOCAL	379	Too-Many
TCGA.CM.6676	20	23112440	25301021	929	0.8645	LARGE-GAIN	NONFOCAL	22	"ABHD12,ACSS1,APMAP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,GGTLC1,GZF1,NAPB,NXT1,PYGB,SYNDIG1,VSX1"
TCGA.NH.A50T	20	23176511	59861716	11641	0.746	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.D5.6533	20	23342099	25473470	844	0.8104	LARGE-GAIN	NONFOCAL	23	"ABHD12,ACSS1,APMAP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,GGTLC1,GINS1,GZF1,NAPB,NINL,PYGB,SYNDIG1,VSX1"
TCGA.CM.6170	20	23399543	62912462	12364	0.7543	LARGE-GAIN	NONFOCAL	374	Too-Many
TCGA.AA.A010.01A	20	23401893	24994548	58	0.6851	LARGE-GAIN	NONFOCAL	16	"ACSS1,APMAP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,GGTLC1,NAPB,SYNDIG1"
TCGA.AA.3955	20	23442084	32684308	1515	0.9396	LARGE-GAIN	NONFOCAL	73	"ABHD12,ACSS1,ACTL10,APMAP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CHMP4B,COMMD7,COX4I2,CST1,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,E2F1,EIF2S2,ENTPD6,FOXS1,GGTLC1,GINS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NANP,NECAB3,NINL,NOL4L,PDRG1,PLAGL2,POFUT1,PXMP4,PYGB,RALY,REM1,SNTA1,SUN5,SYNDIG1,TM9SF4,TPX2,TTLL9,VSX1,XKR7,ZNF337,ZNF341"
TCGA.AG.3581	20	23522627	62912462	12303	0.7141	LARGE-GAIN	NONFOCAL	370	Too-Many
TCGA.AA.A017.01A	20	23529401	25193877	52	0.991	LARGE-GAIN	NONFOCAL	14	"ACSS1,APMAP,CST1,CST2,CST3,CST4,CST5,CST7,CST9,CST9L,ENTPD6,GGTLC1,SYNDIG1,VSX1"
TCGA.AA.A03J	20	23750152	62912462	11932	1.0615	LARGE-GAIN	NONFOCAL	365	Too-Many
TCGA.AG.3574	20	23939276	62912462	12134	1.0528	LARGE-GAIN	NONFOCAL	363	Too-Many
TCGA.D5.5541	20	24247555	62912462	11977	1.2345	LARGE-GAIN	NONFOCAL	362	Too-Many
TCGA.AA.3982	20	24304764	25675601	439	0.7636	LARGE-GAIN	NONFOCAL	12	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1,ZNF337"
TCGA.D5.6898	20	24308225	62912462	11938	0.8159	LARGE-GAIN	NONFOCAL	362	Too-Many
TCGA.AA.3941	20	24315091	25675601	434	0.9983	LARGE-GAIN	NONFOCAL	12	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1,ZNF337"
TCGA.NH.A8F7	20	24499179	47052225	5656	1.174	LARGE-GAIN	NONFOCAL	222	Too-Many
TCGA.AA.3517	20	24526954	62912462	11839	1.1441	LARGE-GAIN	NONFOCAL	362	Too-Many
TCGA.AA.3811	20	24557887	37747736	2056	0.7193	LARGE-GAIN	NONFOCAL	133	Too-Many
TCGA.AA.3975	20	24567366	62912462	11832	0.9208	LARGE-GAIN	NONFOCAL	362	Too-Many
TCGA.D5.6532	20	24708652	62912462	11774	0.7986	LARGE-GAIN	NONFOCAL	361	Too-Many
TCGA.CL.5918	20	24808866	62912462	11701	1.0213	LARGE-GAIN	NONFOCAL	361	Too-Many
TCGA.AA.3496	20	24831933	37001630	1727	1.033	LARGE-GAIN	NONFOCAL	124	Too-Many
TCGA.A6.2675	20	25120879	31027513	363	0.9615	LARGE-GAIN	NONFOCAL	33	"ABHD12,ASXL1,BCL2L1,CCM2L,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,ENTPD6,FOXS1,GINS1,HCK,HM13,ID1,KIF3B,MYLK2,NANP,NINL,PDRG1,PLAGL2,POFUT1,PYGB,REM1,TM9SF4,TPX2,TTLL9,XKR7,ZNF337"
TCGA.EI.6514	20	25155141	31810166	594	1.0196	LARGE-GAIN	NONFOCAL	45	"ABHD12,ASXL1,BCL2L1,BPIFA2,BPIFA3,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf203,CCM2L,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,ENTPD6,FOXS1,GINS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NANP,NINL,NOL4L,PDRG1,PLAGL2,POFUT1,PYGB,REM1,SUN5,TM9SF4,TPX2,TTLL9,XKR7,ZNF337"
TCGA.G4.6303	20	25187574	41105683	3124	0.9894	LARGE-GAIN	NONFOCAL	136	Too-Many
TCGA.AA.A017.01A	20	25198096	37650433	1057	0.9017	LARGE-GAIN	NONFOCAL	128	Too-Many
TCGA.QG.A5Z1	20	25256265	35862056	1223	0.8036	LARGE-GAIN	NONFOCAL	106	Too-Many
TCGA.AG.A014.01A	20	25272994	62904524	2510	0.95	LARGE-GAIN	NONFOCAL	356	Too-Many
TCGA.AG.3592	20	25379525	50337687	6433	1.0652	LARGE-GAIN	NONFOCAL	242	Too-Many
TCGA.AA.A02H.01A	20	25655631	60573992	2176	0.8789	LARGE-GAIN	NONFOCAL	290	Too-Many
TCGA.AF.A56N	20	25706556	62912462	11483	0.7416	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.A6.5662	20	25737115	62912462	11468	1.114	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.A6.3810.01A	20	25829245	62904524	3147	0.7369	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.A6.5666	20	25844992	62912462	11495	0.7314	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3814	20	25844992	62912462	11507	0.9632	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.DC.6683	20	25849037	57045666	9339	1.0957	LARGE-GAIN	NONFOCAL	271	Too-Many
TCGA.D5.6924	20	25897543	56795388	9236	0.7301	LARGE-GAIN	NONFOCAL	268	Too-Many
TCGA.AA.3526	20	25897543	62912462	11492	0.7058	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AG.A026	20	25984795	31806587	465	1.0811	LARGE-GAIN	NONFOCAL	38	"ASXL1,BCL2L1,BPIFA2,BPIFA3,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf203,CCM2L,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NOL4L,PDRG1,PLAGL2,POFUT1,REM1,SUN5,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.AA.A01F.01A	20	26063512	46292802	1565	0.9292	LARGE-GAIN	NONFOCAL	210	Too-Many
TCGA.F4.6854	20	26095587	51576179	6770	0.7553	LARGE-GAIN	NONFOCAL	240	Too-Many
TCGA.AG.4022	20	26095587	62912462	11491	1.0011	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.F5.6571	20	26095587	62912462	11475	0.8759	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.F4.6459	20	26106444	52643154	7223	0.7371	LARGE-GAIN	NONFOCAL	243	Too-Many
TCGA.AA.3685	20	26129446	62912462	11486	0.8071	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3841	20	26161414	62912462	11483	0.8692	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3846	20	26192654	40214880	2558	0.7582	LARGE-GAIN	NONFOCAL	128	Too-Many
TCGA.D5.6533	20	26192654	62912462	11449	0.8008	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.EI.6511	20	26192654	62912462	11479	0.8108	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AG.3612	20	26197930	34716047	970	1.5587	LARGE-GAIN	NONFOCAL	85	"ACSS2,ACTL10,AHCY,ASIP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf173,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CEP250,CHMP4B,CNBD2,COMMD7,COX4I2,CPNE1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,DYNLRB1,E2F1,EDEM2,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,FOXS1,GDF5,GGT7,GSS,HCK,HM13,ID1,ITCH,KIF3B,MAP1LC3A,MAPRE1,MMP24,MYH7B,MYLK2,NCOA6,NECAB3,NFS1,NOL4L,PDRG1,PHF20,PIGU,PLAGL2,POFUT1,PROCR,PXMP4,RALY,RBM12,RBM39,REM1,ROMO1,SCAND1,SNTA1,SPAG4,SUN5,TM9SF4,TP53INP2,TPX2,TRPC4AP,TTLL9,UQCC1,XKR7,ZNF341"
TCGA.AA.3867	20	26197930	59107639	10279	0.8608	LARGE-GAIN	NONFOCAL	287	Too-Many
TCGA.A6.6650	20	26197930	62912462	10712	1.0071	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.CM.5860	20	26222698	62912462	11453	0.8292	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.DM.A1DB	20	26222698	62912462	11478	0.8238	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AZ.6608	20	26239963	31308683	256	1.2754	LARGE-GAIN	NONFOCAL	29	"ASXL1,BCL2L1,C20orf203,CCM2L,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MYLK2,NOL4L,PDRG1,PLAGL2,POFUT1,REM1,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.DC.4749	20	26239963	62912462	11477	1.2637	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.A6.6648	20	26253681	59569515	10525	0.8206	LARGE-GAIN	NONFOCAL	287	Too-Many
TCGA.AA.3875	20	26266312	37001630	1479	0.6931	LARGE-GAIN	NONFOCAL	113	Too-Many
TCGA.G4.6307	20	26288534	30948280	199	1.112	LARGE-GAIN	NONFOCAL	26	"ASXL1,BCL2L1,CCM2L,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MYLK2,PDRG1,PLAGL2,POFUT1,REM1,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.A6.6651	20	26288534	62912462	11417	1.0322	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.CM.6679	20	26288534	62912462	11428	0.91575	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AZ.4682	20	26289924	44336885	4202	0.7082	LARGE-GAIN	NONFOCAL	179	Too-Many
TCGA.AA.3495	20	26289924	62912462	11461	0.7169	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AZ.4308	20	26289924	62912462	11464	0.9141	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.F5.6811.01A	20	29309077	62374968	3095	1.0188	LARGE-GAIN	NONFOCAL	334	Too-Many
TCGA.AD.6888	20	29505892	31097988	215	1.272	LARGE-GAIN	NONFOCAL	27	"ASXL1,BCL2L1,CCM2L,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MYLK2,NOL4L,PDRG1,PLAGL2,POFUT1,REM1,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.DY.A1DD	20	29505892	32633325	628	1.2861	LARGE-GAIN	NONFOCAL	51	"ACTL10,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CHMP4B,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,E2F1,FOXS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NECAB3,NOL4L,PDRG1,PLAGL2,POFUT1,PXMP4,RALY,REM1,SNTA1,SUN5,TM9SF4,TPX2,TTLL9,XKR7,ZNF341"
TCGA.AA.A01S	20	29505892	35544672	1070	1.09065	LARGE-GAIN	NONFOCAL	97	"AAR2,ACSS2,ACTL10,AHCY,ASIP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf173,C20orf203,C20orf24,CBFA2T2,CCM2L,CDK5RAP1,CEP250,CHMP4B,CNBD2,COMMD7,COX4I2,CPNE1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DLGAP4,DNMT3B,DSN1,DUSP15,DYNLRB1,E2F1,EDEM2,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,FOXS1,GDF5,GGT7,GSS,HCK,HM13,ID1,ITCH,KIF3B,MAP1LC3A,MAPRE1,MMP24,MYH7B,MYL9,MYLK2,NCOA6,NDRG3,NECAB3,NFS1,NOL4L,PDRG1,PHF20,PIGU,PLAGL2,POFUT1,PROCR,PXMP4,RALY,RBM12,RBM39,REM1,ROMO1,SAMHD1,SCAND1,SLA2,SNTA1,SOGA1,SPAG4,SUN5,TGIF2,TGIF2-C20orf24,TLDC2,TM9SF4,TP53INP2,TPX2,TRPC4AP,TTLL9,UQCC1,XKR7,ZNF341"
TCGA.AF.A56L	20	29505892	38640356	2040	0.9457	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.AA.3855	20	29505892	44342338	4192	0.7657	LARGE-GAIN	NONFOCAL	179	Too-Many
TCGA.DC.6154	20	29505892	51483331	6713	1.2667	LARGE-GAIN	NONFOCAL	240	Too-Many
TCGA.A6.6654	20	29505892	62912462	11441	0.7493	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3519	20	29505892	62912462	11461	0.9738	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3531	20	29505892	62912462	11459	0.9035	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AF.4110	20	29505892	62912462	11467	0.7133	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AG.A020	20	29505892	62912462	11451	0.8086	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AY.A8YK	20	29505892	62912462	11457	0.7976	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.CK.6748	20	29505892	62912462	11452	0.7806	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.CM.4746	20	29505892	62912462	11459	0.7144	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.CM.6164	20	29505892	62912462	11451	0.6865	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.CM.6676	20	29505892	62912462	11426	0.8723	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.D5.6537	20	29505892	62912462	11418	0.7088	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.D5.6923	20	29505892	62912462	11448	0.8404	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.DC.6158	20	29505892	62912462	11429	0.6875	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.DY.A0XA	20	29505892	62912462	11453	0.7328	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.EI.6513	20	29505892	62912462	11469	0.7364	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.EI.6883	20	29505892	62912462	11441	0.8508	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.F5.6863	20	29505892	62912462	11454	0.7802	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.G5.6572	20	29505892	62912462	11448	0.8428	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.NH.A8F8	20	29505892	62912462	11460	0.8155	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3511	20	29529824	43253130	3817	1.0281	LARGE-GAIN	NONFOCAL	147	Too-Many
TCGA.AA.3678	20	29529824	62912462	11470	0.7043	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3524	20	29529914	47851918	5512	0.7296	LARGE-GAIN	NONFOCAL	215	Too-Many
TCGA.A6.5656	20	29529914	62912462	11420	1.0182	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.A6.5660	20	29586146	31144461	217	1.2994	LARGE-GAIN	NONFOCAL	27	"ASXL1,BCL2L1,CCM2L,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MYLK2,NOL4L,PDRG1,PLAGL2,POFUT1,REM1,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.T9.A92H	20	29598226	31916072	491	1.0149	LARGE-GAIN	NONFOCAL	40	"ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf203,CCM2L,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NOL4L,PDRG1,PLAGL2,POFUT1,REM1,SUN5,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.DY.A1DG	20	29598226	36737338	1357	0.8653	LARGE-GAIN	NONFOCAL	109	Too-Many
TCGA.CK.5912	20	29598226	37771044	1669	0.7824	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.AZ.6605	20	29598226	41947911	3386	0.6873	LARGE-GAIN	NONFOCAL	129	Too-Many
TCGA.AG.A01N.01A	20	29623125	48503242	1834	1.0541	LARGE-GAIN	NONFOCAL	220	Too-Many
TCGA.AG.A016.01A	20	29631492	30438391	68	0.9931	LARGE-GAIN	NONFOCAL	15	"BCL2L1,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,FOXS1,HM13,ID1,MYLK2,REM1,TPX2"
TCGA.AG.A02G.01A	20	29631492	49221135	1865	1.1354	LARGE-GAIN	NONFOCAL	230	Too-Many
TCGA.AA.A00O.01A	20	29845416	58883477	2158	0.9379	LARGE-GAIN	NONFOCAL	287	Too-Many
TCGA.AA.3971	20	29846302	30533948	117	2.2558	LARGE-GAIN	NONFOCAL	18	"BCL2L1,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HM13,ID1,MYLK2,PDRG1,REM1,TPX2,TTLL9"
TCGA.G4.6317	20	29846302	31028126	197	0.8309	LARGE-GAIN	NONFOCAL	26	"ASXL1,BCL2L1,CCM2L,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MYLK2,PDRG1,PLAGL2,POFUT1,REM1,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.AA.3561	20	29846302	32386269	555	0.9247	LARGE-GAIN	NONFOCAL	49	"ACTL10,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,E2F1,FOXS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NECAB3,NOL4L,PDRG1,PLAGL2,POFUT1,PXMP4,REM1,SNTA1,SUN5,TM9SF4,TPX2,TTLL9,XKR7,ZNF341"
TCGA.AD.A5EK	20	29846302	38061368	1768	1.0928	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.AY.A54L.01A	20	29847236	62904524	3107	0.7258	LARGE-GAIN	NONFOCAL	350	Too-Many
TCGA.A6.6140	20	29847585	62912462	11458	1.1744	LARGE-GAIN	NONFOCAL	349	Too-Many
TCGA.AA.3972	20	29955446	50820974	6444	0.9764	LARGE-GAIN	NONFOCAL	238	Too-Many
TCGA.AD.6963	20	29963829	62912462	11410	0.7268	LARGE-GAIN	NONFOCAL	347	Too-Many
TCGA.AA.3982	20	29995516	37129240	1466	0.9198	LARGE-GAIN	NONFOCAL	110	Too-Many
TCGA.AA.3941	20	30002535	37757724	1625	1.0184	LARGE-GAIN	NONFOCAL	116	Too-Many
TCGA.A6.6782	20	30023368	33384804	659	0.7199	LARGE-GAIN	NONFOCAL	55	"ACTL10,AHCY,ASIP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CHMP4B,COMMD7,COX4I2,DEFB123,DEFB124,DNMT3B,DUSP15,DYNLRB1,E2F1,EIF2S2,FOXS1,HCK,HM13,ID1,ITCH,KIF3B,MAP1LC3A,MAPRE1,MYLK2,NCOA6,NECAB3,NOL4L,PDRG1,PIGU,PLAGL2,POFUT1,PXMP4,RALY,REM1,SNTA1,SUN5,TM9SF4,TP53INP2,TPX2,TTLL9,XKR7,ZNF341"
TCGA.AG.3883	20	30084414	31075660	149	0.9979	LARGE-GAIN	NONFOCAL	19	"ASXL1,BCL2L1,CCM2L,COX4I2,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MYLK2,NOL4L,PDRG1,PLAGL2,POFUT1,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.DC.6157	20	30109828	37129240	1437	0.7938	LARGE-GAIN	NONFOCAL	106	Too-Many
TCGA.DY.A1H8	20	30330305	59490082	10385	0.9409	LARGE-GAIN	NONFOCAL	275	Too-Many
TCGA.AA.A00Q.01A	20	30407313	30822235	68	0.8715	LARGE-GAIN	NONFOCAL	11	"CCM2L,DUSP15,FOXS1,HCK,MYLK2,PDRG1,PLAGL2,POFUT1,TM9SF4,TTLL9,XKR7"
TCGA.AG.A016.01A	20	30474933	31590334	129	0.9253	LARGE-GAIN	NONFOCAL	16	"ASXL1,C20orf203,CCM2L,COMMD7,DNMT3B,HCK,KIF3B,MAPRE1,NOL4L,PDRG1,PLAGL2,POFUT1,SUN5,TM9SF4,TTLL9,XKR7"
TCGA.AA.3971	20	30578466	62912462	11333	0.8407	LARGE-GAIN	NONFOCAL	332	Too-Many
TCGA.A6.A56B	20	30589022	33801282	673	1.351	LARGE-GAIN	NONFOCAL	48	"ACSS2,ACTL10,AHCY,ASIP,ASXL1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CHMP4B,COMMD7,DNMT3B,DYNLRB1,E2F1,EDEM2,EIF2S2,GGT7,GSS,HCK,ITCH,KIF3B,MAP1LC3A,MAPRE1,MYH7B,NCOA6,NECAB3,NOL4L,PIGU,PLAGL2,POFUT1,PROCR,PXMP4,RALY,SNTA1,SUN5,TM9SF4,TP53INP2,TRPC4AP,ZNF341"
TCGA.DM.A1D6	20	30808887	50803759	6236	1.2246	LARGE-GAIN	NONFOCAL	217	Too-Many
TCGA.AD.6888	20	31098564	48224733	5423	0.951	LARGE-GAIN	NONFOCAL	192	Too-Many
TCGA.A6.5660	20	31145414	33523839	509	0.9656	LARGE-GAIN	NONFOCAL	37	"ACSS2,ACTL10,AHCY,ASIP,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CDK5RAP1,CHMP4B,COMMD7,DNMT3B,DYNLRB1,E2F1,EIF2S2,GGT7,GSS,ITCH,MAP1LC3A,MAPRE1,NCOA6,NECAB3,NOL4L,PIGU,PXMP4,RALY,SNTA1,SUN5,TP53INP2,ZNF341"
TCGA.AZ.6608	20	31318736	44474972	3983	0.8435	LARGE-GAIN	NONFOCAL	158	Too-Many
TCGA.AA.A00Q.01A	20	31660460	32890966	138	0.9164	LARGE-GAIN	NONFOCAL	20	"ACTL10,AHCY,ASIP,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB3,BPIFB4,C20orf144,CBFA2T2,CDK5RAP1,CHMP4B,E2F1,EIF2S2,NECAB3,PXMP4,RALY,SNTA1,ZNF341"
TCGA.AG.A026	20	31821769	52643154	6752	1.1307	LARGE-GAIN	NONFOCAL	205	Too-Many
TCGA.EI.6514	20	31821769	62912462	11012	0.9921	LARGE-GAIN	NONFOCAL	312	Too-Many
TCGA.AA.A00D.01A	20	31954618	33045156	90	0.7783	LARGE-GAIN	NONFOCAL	15	"ACTL10,AHCY,ASIP,C20orf144,CBFA2T2,CDK5RAP1,CHMP4B,E2F1,EIF2S2,ITCH,NECAB3,PXMP4,RALY,SNTA1,ZNF341"
TCGA.A6.2675	20	32158582	32996100	128	0.9082	LARGE-GAIN	NONFOCAL	13	"ACTL10,AHCY,ASIP,C20orf144,CBFA2T2,CHMP4B,E2F1,EIF2S2,ITCH,NECAB3,PXMP4,RALY,ZNF341"
TCGA.AA.A01T	20	32262961	62912462	10906	0.8313	LARGE-GAIN	NONFOCAL	304	Too-Many
TCGA.G4.6317	20	32262961	62912462	10923	0.8142	LARGE-GAIN	NONFOCAL	304	Too-Many
TCGA.AG.A016.01A	20	32328671	34099227	256	0.9961	LARGE-GAIN	NONFOCAL	25	"ACSS2,AHCY,ASIP,CEP250,CHMP4B,DYNLRB1,EDEM2,EIF2S2,EIF6,FAM83C,GDF5,GGT7,GSS,ITCH,MAP1LC3A,MMP24,MYH7B,NCOA6,PIGU,PROCR,RALY,TP53INP2,TRPC4AP,UQCC1,ZNF341"
TCGA.AA.3561	20	32392999	35401298	489	1.1528	LARGE-GAIN	NONFOCAL	45	"AAR2,ACSS2,AHCY,ASIP,C20orf173,C20orf24,CEP250,CHMP4B,CNBD2,CPNE1,DLGAP4,DSN1,DYNLRB1,EDEM2,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,GGT7,GSS,ITCH,MAP1LC3A,MMP24,MYH7B,MYL9,NCOA6,NDRG3,NFS1,PHF20,PIGU,PROCR,RALY,RBM12,RBM39,ROMO1,SCAND1,SLA2,SPAG4,TGIF2,TGIF2-C20orf24,TP53INP2,TRPC4AP,UQCC1"
TCGA.AA.3984	20	32506594	33863632	226	0.8975	LARGE-GAIN	NONFOCAL	18	"ACSS2,AHCY,ASIP,DYNLRB1,EDEM2,EIF2S2,GGT7,GSS,ITCH,MAP1LC3A,MMP24,MYH7B,NCOA6,PIGU,PROCR,RALY,TP53INP2,TRPC4AP"
TCGA.AA.3666	20	32615222	62912462	10842	0.6783	LARGE-GAIN	NONFOCAL	300	Too-Many
TCGA.AA.3955	20	32692279	45600308	4050	1.4597	LARGE-GAIN	NONFOCAL	156	Too-Many
TCGA.AG.3742	20	32996100	37279966	879	0.8399	LARGE-GAIN	NONFOCAL	62	"AAR2,ACSS2,ADIG,ARHGAP40,BLCAP,BPI,C20orf173,C20orf24,CEP250,CNBD2,CPNE1,CTNNBL1,DLGAP4,DSN1,DYNLRB1,EDEM2,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,GGT7,GHRH,GSS,ITCH,KIAA1755,LBP,MANBAL,MAP1LC3A,MMP24,MROH8,MYH7B,MYL9,NCOA6,NDRG3,NFS1,NNAT,PHF20,PIGU,PROCR,RALGAPB,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SOGA1,SPAG4,SRC,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TP53INP2,TRPC4AP,TTI1,UQCC1,VSTM2L"
TCGA.CK.5914.01A	20	33077023	34220057	241	1.3476	LARGE-GAIN	NONFOCAL	23	"ACSS2,C20orf173,CEP250,CPNE1,DYNLRB1,EDEM2,EIF6,ERGIC3,FAM83C,GDF5,GGT7,GSS,ITCH,MAP1LC3A,MMP24,MYH7B,NCOA6,PIGU,PROCR,SPAG4,TP53INP2,TRPC4AP,UQCC1"
TCGA.A6.2675	20	33081905	33744133	119	1.1122	LARGE-GAIN	NONFOCAL	12	"ACSS2,DYNLRB1,EDEM2,GGT7,GSS,ITCH,MAP1LC3A,MYH7B,NCOA6,PIGU,TP53INP2,TRPC4AP"
TCGA.DY.A1DD	20	33081905	46034575	4182	1.3971	LARGE-GAIN	NONFOCAL	154	Too-Many
TCGA.AA.A00D.01A	20	33095463	34618250	253	0.7869	LARGE-GAIN	NONFOCAL	30	"ACSS2,C20orf173,CEP250,CNBD2,CPNE1,DYNLRB1,EDEM2,EIF6,ERGIC3,FAM83C,GDF5,GGT7,GSS,ITCH,MAP1LC3A,MMP24,MYH7B,NCOA6,NFS1,PHF20,PIGU,PROCR,RBM12,RBM39,ROMO1,SCAND1,SPAG4,TP53INP2,TRPC4AP,UQCC1"
TCGA.AA.A00Q.01A	20	33264720	36766436	435	0.929	LARGE-GAIN	NONFOCAL	53	"AAR2,ACSS2,BLCAP,C20orf173,C20orf24,CEP250,CNBD2,CPNE1,CTNNBL1,DLGAP4,DSN1,EDEM2,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,GGT7,GHRH,GSS,MANBAL,MMP24,MROH8,MYH7B,MYL9,NCOA6,NDRG3,NFS1,NNAT,PHF20,PIGU,PROCR,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SOGA1,SPAG4,SRC,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TP53INP2,TRPC4AP,TTI1,UQCC1,VSTM2L"
TCGA.A6.6782	20	33400473	35276397	327	1.0148	LARGE-GAIN	NONFOCAL	33	"AAR2,ACSS2,C20orf173,C20orf24,CEP250,CNBD2,CPNE1,DLGAP4,EDEM2,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,GGT7,GSS,MMP24,MYH7B,MYL9,NCOA6,NFS1,PHF20,PROCR,RBM12,RBM39,ROMO1,SCAND1,SLA2,SPAG4,TGIF2,TGIF2-C20orf24,TRPC4AP,UQCC1"
TCGA.AA.3697	20	33488770	51138698	5850	1.1726	LARGE-GAIN	NONFOCAL	179	Too-Many
TCGA.A6.A56B	20	33804220	62912462	10603	0.9944	LARGE-GAIN	NONFOCAL	283	Too-Many
TCGA.A6.5660	20	33839938	35276397	231	0.8141	LARGE-GAIN	NONFOCAL	25	"AAR2,C20orf173,C20orf24,CEP250,CNBD2,CPNE1,DLGAP4,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,MMP24,MYL9,NFS1,PHF20,RBM12,RBM39,ROMO1,SCAND1,SLA2,SPAG4,TGIF2,TGIF2-C20orf24,UQCC1"
TCGA.AG.4009.01A	20	33891691	34304623	95	1.1609	LARGE-GAIN	NONFOCAL	11	"C20orf173,CEP250,CPNE1,ERGIC3,GDF5,NFS1,RBM12,RBM39,ROMO1,SPAG4,UQCC1"
TCGA.A6.2675	20	33909751	34578223	110	1.0003	LARGE-GAIN	NONFOCAL	14	"C20orf173,CEP250,CNBD2,CPNE1,ERGIC3,GDF5,NFS1,PHF20,RBM12,RBM39,ROMO1,SCAND1,SPAG4,UQCC1"
TCGA.CI.6623	20	34055705	62912462	10606	0.7536	LARGE-GAIN	NONFOCAL	278	Too-Many
TCGA.AG.A016.01A	20	34302077	39793888	415	0.9942	LARGE-GAIN	NONFOCAL	44	"AAR2,ACTR5,ADIG,ARHGAP40,BLCAP,BPI,C20orf24,CNBD2,CTNNBL1,DHX35,DLGAP4,DSN1,EPB41L1,FAM83D,GHRH,KIAA1755,LBP,MAFB,MANBAL,MROH8,MYL9,NDRG3,NNAT,PHF20,PLCG1,PPP1R16B,RALGAPB,RBL1,RBM39,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SLC32A1,SOGA1,SRC,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TOP1,TTI1,VSTM2L"
TCGA.AG.3898	20	34499367	36302611	314	1.1975	LARGE-GAIN	NONFOCAL	24	"AAR2,BLCAP,C20orf24,CNBD2,DLGAP4,DSN1,EPB41L1,GHRH,MANBAL,MROH8,MYL9,NDRG3,NNAT,PHF20,RBL1,RPN2,SAMHD1,SCAND1,SLA2,SOGA1,SRC,TGIF2,TGIF2-C20orf24,TLDC2"
TCGA.AG.3612	20	34732984	62912462	10407	1.1892	LARGE-GAIN	NONFOCAL	266	Too-Many
TCGA.AG.4009.01A	20	35060454	35579798	85	1.0709	LARGE-GAIN	NONFOCAL	11	"C20orf24,DLGAP4,DSN1,MYL9,NDRG3,SAMHD1,SLA2,SOGA1,TGIF2,TGIF2-C20orf24,TLDC2"
TCGA.AA.A00L.01A	20	35125108	35812546	91	1.1521	LARGE-GAIN	NONFOCAL	14	"C20orf24,DLGAP4,DSN1,MROH8,MYL9,NDRG3,RBL1,RPN2,SAMHD1,SLA2,SOGA1,TGIF2,TGIF2-C20orf24,TLDC2"
TCGA.AG.A036.01A	20	35240995	41788295	405	1.0427	LARGE-GAIN	NONFOCAL	38	"ACTR5,ADIG,ARHGAP40,BLCAP,BPI,CHD6,CTNNBL1,DHX35,DSN1,EMILIN3,FAM83D,GHRH,KIAA1755,LBP,LPIN3,MAFB,MANBAL,MROH8,NDRG3,NNAT,PLCG1,PPP1R16B,PTPRT,RALGAPB,RBL1,RPN2,RPRD1B,SAMHD1,SLA2,SLC32A1,SOGA1,SRC,TGM2,TLDC2,TOP1,TTI1,VSTM2L,ZHX3"
TCGA.A6.6782	20	35276584	47705235	4443	0.7304	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.A6.2675	20	35343829	36213782	143	0.8872	LARGE-GAIN	NONFOCAL	13	"BLCAP,DSN1,GHRH,MANBAL,MROH8,NDRG3,NNAT,RBL1,RPN2,SAMHD1,SOGA1,SRC,TLDC2"
TCGA.AF.3913	20	35729949	58789072	8959	0.9414	LARGE-GAIN	NONFOCAL	189	Too-Many
TCGA.AA.A00L.01A	20	35826746	39657986	204	0.8123	LARGE-GAIN	NONFOCAL	24	"ACTR5,ADIG,ARHGAP40,BLCAP,BPI,CTNNBL1,DHX35,FAM83D,GHRH,KIAA1755,LBP,MAFB,MANBAL,NNAT,PPP1R16B,RALGAPB,RPN2,RPRD1B,SLC32A1,SRC,TGM2,TOP1,TTI1,VSTM2L"
TCGA.A6.2675	20	36213914	37271865	354	1.2433	LARGE-GAIN	NONFOCAL	11	"ADIG,ARHGAP40,BPI,CTNNBL1,KIAA1755,LBP,RALGAPB,RPRD1B,TGM2,TTI1,VSTM2L"
TCGA.AG.3898	20	36303044	44395663	2966	0.8591	LARGE-GAIN	NONFOCAL	75	"ACTR5,ADA,ADIG,ARHGAP40,BPI,C20orf62,CHD6,CTNNBL1,DBNDD2,DHX35,EMILIN3,EPPIN,EPPIN-WFDC6,FAM83D,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,KIAA1755,L3MBTL1,LBP,LPIN3,MAFB,MATN4,MYBL2,OSER1,PABPC1L,PI3,PIGT,PKIG,PLCG1,PPP1R16B,PTPRT,R3HDML,RALGAPB,RBPJL,RIMS4,RPRD1B,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC32A1,SLPI,SPINT3,SPINT4,SRSF6,STK4,SYS1,TGM2,TOMM34,TOP1,TOX2,TP53TG5,TTI1,TTPAL,VSTM2L,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZHX3"
TCGA.AA.A00Q.01A	20	36851902	39657986	117	1.0239	LARGE-GAIN	NONFOCAL	13	"ACTR5,ADIG,ARHGAP40,BPI,DHX35,FAM83D,KIAA1755,LBP,MAFB,PPP1R16B,RALGAPB,SLC32A1,TOP1"
TCGA.EI.7002	20	36993046	62912462	9991	0.7439	LARGE-GAIN	NONFOCAL	238	Too-Many
TCGA.DC.5337	20	37018832	62912462	9924	0.7752	LARGE-GAIN	NONFOCAL	237	Too-Many
TCGA.AA.3496	20	37024833	62912462	9952	1.022	LARGE-GAIN	NONFOCAL	237	Too-Many
TCGA.G4.6307	20	37026378	62912462	9984	0.7675	LARGE-GAIN	NONFOCAL	237	Too-Many
TCGA.DC.6157	20	37179498	41991600	1872	0.7471	LARGE-GAIN	NONFOCAL	16	"ACTR5,ADIG,ARHGAP40,CHD6,DHX35,EMILIN3,FAM83D,LPIN3,MAFB,PLCG1,PPP1R16B,PTPRT,RALGAPB,SLC32A1,TOP1,ZHX3"
TCGA.QG.A5YV	20	37202961	62912462	9882	0.8881	LARGE-GAIN	NONFOCAL	237	Too-Many
TCGA.A6.2675	20	37278106	40845067	1289	0.9538	LARGE-GAIN	NONFOCAL	14	"ACTR5,ARHGAP40,CHD6,DHX35,EMILIN3,FAM83D,LPIN3,MAFB,PLCG1,PPP1R16B,PTPRT,SLC32A1,TOP1,ZHX3"
TCGA.AG.3742	20	37297125	40464793	1061	0.9067	LARGE-GAIN	NONFOCAL	12	"ACTR5,CHD6,DHX35,EMILIN3,FAM83D,LPIN3,MAFB,PLCG1,PPP1R16B,SLC32A1,TOP1,ZHX3"
TCGA.QL.A97D	20	37703811	56501295	7405	0.755	LARGE-GAIN	NONFOCAL	145	Too-Many
TCGA.AZ.4681	20	38252158	52643154	5333	0.8164	LARGE-GAIN	NONFOCAL	122	Too-Many
TCGA.CK.5912	20	38472157	62912462	9466	0.7731	LARGE-GAIN	NONFOCAL	229	Too-Many
TCGA.AF.A56L	20	38647343	62912462	9392	0.9293	LARGE-GAIN	NONFOCAL	229	Too-Many
TCGA.G4.6310	20	39039282	62912462	9270	1.2104	LARGE-GAIN	NONFOCAL	229	Too-Many
TCGA.AA.3869	20	39521580	45513744	2209	1.2155	LARGE-GAIN	NONFOCAL	84	"ACOT8,ADA,C20orf62,CD40,CDH22,CHD6,CTSA,DBNDD2,DNTTIP1,ELMO2,EMILIN3,EPPIN,EPPIN-WFDC6,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,LPIN3,MATN4,MMP9,MYBL2,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLCG1,PLTP,PTPRT,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SRSF6,STK4,SYS1,TNNC2,TOMM34,TOP1,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZHX3,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AG.A016.01A	20	40040734	62904524	1407	0.977	LARGE-GAIN	NONFOCAL	223	Too-Many
TCGA.A6.5660	20	40170872	48540150	3188	0.9554	LARGE-GAIN	NONFOCAL	94	"ACOT8,ADA,ARFGEF2,B4GALT5,C20orf62,CD40,CDH22,CHD6,CSE1L,CTSA,DBNDD2,DDX27,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,EYA2,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNB1,KCNK15,KCNS1,L3MBTL1,MATN4,MMP9,MYBL2,NCOA3,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,PREX1,PTGIS,PTPRT,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLC9A8,SLPI,SNX21,SPATA2,SPATA25,SPINT3,SPINT4,SRSF6,STAU1,STK4,SULF2,SYS1,TNNC2,TOMM34,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZMYND8,ZNF334,ZNF335,ZNFX1,ZSWIM1,ZSWIM3"
TCGA.AA.3846	20	40243936	43278693	1289	1.7132	LARGE-GAIN	NONFOCAL	20	"ADA,C20orf62,CHD6,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,L3MBTL1,MYBL2,OSER1,PKIG,PTPRT,R3HDML,SERINC3,SGK2,SRSF6,TOX2,TTPAL"
TCGA.DM.A1D7	20	40399257	60304160	8309	0.6959	LARGE-GAIN	NONFOCAL	160	Too-Many
TCGA.G4.6303	20	41106607	45368153	1561	1.4408	LARGE-GAIN	NONFOCAL	78	"ACOT8,ADA,C20orf62,CD40,CDH22,CTSA,DBNDD2,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MATN4,MMP9,MYBL2,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,PTPRT,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SRSF6,STK4,SYS1,TNNC2,TOMM34,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AA.3660	20	41260511	62912462	8386	0.7694	LARGE-GAIN	NONFOCAL	222	Too-Many
TCGA.G4.6311	20	41292511	62912462	8377	0.7302	LARGE-GAIN	NONFOCAL	222	Too-Many
TCGA.AA.A01D.01A	20	41408798	45239053	403	0.9174	LARGE-GAIN	NONFOCAL	76	"ACOT8,ADA,C20orf62,CD40,CDH22,CTSA,DBNDD2,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MATN4,MMP9,MYBL2,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,PTPRT,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLC13A3,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SRSF6,STK4,SYS1,TNNC2,TOMM34,TOX2,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AA.A017.01A	20	41419787	61430761	1129	0.863	LARGE-GAIN	NONFOCAL	177	Too-Many
TCGA.AA.3679	20	41523039	43337154	611	1.8997	LARGE-GAIN	NONFOCAL	19	"ADA,C20orf62,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,L3MBTL1,MYBL2,OSER1,PKIG,PTPRT,R3HDML,SERINC3,SGK2,SRSF6,TOX2,TTPAL"
TCGA.G4.6299	20	41552019	44904162	1121	0.719	LARGE-GAIN	NONFOCAL	71	"ACOT8,ADA,C20orf62,CD40,CDH22,CTSA,DBNDD2,DNTTIP1,EPPIN,EPPIN-WFDC6,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MATN4,MMP9,MYBL2,NCOA5,NEURL2,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,PTPRT,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SRSF6,STK4,SYS1,TNNC2,TOMM34,TOX2,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AA.3982	20	41560524	43828667	737	0.8071	LARGE-GAIN	NONFOCAL	30	"ADA,C20orf62,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MYBL2,OSER1,PABPC1L,PI3,PKIG,PTPRT,R3HDML,RIMS4,SERINC3,SGK2,SRSF6,STK4,TOMM34,TOX2,TTPAL,WFDC12,WFDC5,WISP2,YWHAB"
TCGA.AA.3811	20	41594360	51319079	3390	0.7008	LARGE-GAIN	NONFOCAL	112	Too-Many
TCGA.AA.3941	20	41746709	51243013	3280	0.9727	LARGE-GAIN	NONFOCAL	112	Too-Many
TCGA.AD.A5EK	20	41944206	46640087	1653	1.4833	LARGE-GAIN	NONFOCAL	81	"ACOT8,ADA,C20orf62,CD40,CDH22,CTSA,DBNDD2,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,EYA2,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MATN4,MMP9,MYBL2,NCOA3,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SRSF6,STK4,SULF2,SYS1,TNNC2,TOMM34,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZMYND8,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AZ.6605	20	41948035	52806669	3890	1.0742	LARGE-GAIN	NONFOCAL	115	Too-Many
TCGA.DC.6157	20	42001417	48220011	2199	1.1003	LARGE-GAIN	NONFOCAL	89	"ACOT8,ADA,ARFGEF2,C20orf62,CD40,CDH22,CSE1L,CTSA,DBNDD2,DDX27,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,EYA2,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNB1,KCNK15,KCNS1,L3MBTL1,MATN4,MMP9,MYBL2,NCOA3,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,PREX1,PTGIS,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SRSF6,STAU1,STK4,SULF2,SYS1,TNNC2,TOMM34,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZMYND8,ZNF334,ZNF335,ZNFX1,ZSWIM1,ZSWIM3"
TCGA.AG.A036.01A	20	42007918	43871098	232	1.4956	LARGE-GAIN	NONFOCAL	31	"ADA,C20orf62,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MYBL2,OSER1,PABPC1L,PI3,PKIG,R3HDML,RIMS4,SEMG1,SEMG2,SERINC3,SGK2,SRSF6,STK4,TOMM34,TOX2,TTPAL,WFDC12,WFDC5,WISP2,YWHAB"
TCGA.AG.3742	20	42098257	51719850	3341	1.0234	LARGE-GAIN	NONFOCAL	111	Too-Many
TCGA.AZ.4614	20	42167743	43951545	567	1.6639	LARGE-GAIN	NONFOCAL	33	"ADA,C20orf62,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MATN4,MYBL2,OSER1,PABPC1L,PI3,PKIG,R3HDML,RBPJL,RIMS4,SEMG1,SEMG2,SERINC3,SGK2,SLPI,STK4,TOMM34,TOX2,TTPAL,WFDC12,WFDC5,WISP2,YWHAB"
TCGA.AA.A01C.01A	20	42195676	62904524	1331	0.6919	LARGE-GAIN	NONFOCAL	219	Too-Many
TCGA.DY.A1DG	20	42242699	50218625	2787	0.7832	LARGE-GAIN	NONFOCAL	106	Too-Many
TCGA.CK.5914.01A	20	42247533	43743586	153	1.3542	LARGE-GAIN	NONFOCAL	24	"ADA,C20orf62,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,MYBL2,OSER1,PABPC1L,PKIG,R3HDML,RIMS4,SERINC3,STK4,TOMM34,TOX2,TTPAL,WFDC5,WISP2,YWHAB"
TCGA.AA.3856	20	42319623	62912462	7963	0.7303	LARGE-GAIN	NONFOCAL	217	Too-Many
TCGA.AA.A010.01A	20	42328345	43255060	80	0.6966	LARGE-GAIN	NONFOCAL	14	"ADA,C20orf62,FITM2,GDAP1L1,GTSF1L,HNF4A,JPH2,MYBL2,OSER1,PKIG,R3HDML,SERINC3,TOX2,TTPAL"
TCGA.AA.A00Q.01A	20	42331082	45918878	424	0.8308	LARGE-GAIN	NONFOCAL	75	"ACOT8,ADA,C20orf62,CD40,CDH22,CTSA,DBNDD2,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,EYA2,FITM2,GDAP1L1,GTSF1L,HNF4A,JPH2,KCNK15,KCNS1,MATN4,MMP9,MYBL2,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,STK4,SYS1,TNNC2,TOMM34,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZMYND8,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.QG.A5Z1	20	42375399	48373824	2143	0.8095	LARGE-GAIN	NONFOCAL	84	"ACOT8,ADA,ARFGEF2,B4GALT5,C20orf62,CD40,CDH22,CSE1L,CTSA,DBNDD2,DDX27,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,EYA2,FITM2,GDAP1L1,HNF4A,JPH2,KCNB1,KCNK15,KCNS1,MATN4,MMP9,NCOA3,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,PREX1,PTGIS,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,STAU1,STK4,SULF2,SYS1,TNNC2,TOMM34,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZMYND8,ZNF334,ZNF335,ZNFX1,ZSWIM1,ZSWIM3"
TCGA.G4.6625	20	42463177	44601292	732	1.2334	LARGE-GAIN	NONFOCAL	59	"ACOT8,ADA,C20orf62,CTSA,DBNDD2,DNTTIP1,EPPIN,EPPIN-WFDC6,FITM2,GDAP1L1,HNF4A,JPH2,KCNK15,KCNS1,MATN4,NEURL2,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SLPI,SNX21,SPATA25,SPINT3,SPINT4,STK4,SYS1,TNNC2,TOMM34,TOX2,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZNF335,ZSWIM1,ZSWIM3"
TCGA.DM.A28A	20	42495337	59776754	7096	1.0772	LARGE-GAIN	NONFOCAL	152	Too-Many
TCGA.A6.2675	20	42671758	43503037	251	1.3697	LARGE-GAIN	NONFOCAL	15	"ADA,C20orf62,FITM2,GDAP1L1,HNF4A,JPH2,KCNK15,OSER1,PKIG,R3HDML,RIMS4,SERINC3,TOX2,TTPAL,WISP2"
TCGA.AA.A00L.01A	20	43251451	44423943	139	0.7093	LARGE-GAIN	NONFOCAL	36	"ADA,DBNDD2,DNTTIP1,EPPIN,EPPIN-WFDC6,KCNK15,KCNS1,MATN4,PABPC1L,PI3,PIGT,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SLPI,SPINT3,SPINT4,STK4,SYS1,TOMM34,TP53TG5,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB"
TCGA.AG.4009.01A	20	43252806	43752498	54	1.0658	LARGE-GAIN	NONFOCAL	11	"ADA,KCNK15,KCNS1,PABPC1L,RIMS4,STK4,TOMM34,WFDC12,WFDC5,WISP2,YWHAB"
TCGA.AA.3846	20	43283690	62912462	7628	0.7477	LARGE-GAIN	NONFOCAL	203	Too-Many
TCGA.AA.3679	20	43398732	44199242	286	0.8229	LARGE-GAIN	NONFOCAL	25	"DBNDD2,EPPIN,EPPIN-WFDC6,KCNS1,MATN4,PABPC1L,PI3,PIGT,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SLPI,SPINT3,STK4,SYS1,TOMM34,TP53TG5,WFDC12,WFDC2,WFDC5,WFDC6,WFDC8,YWHAB"
TCGA.A6.2675	20	43508686	43971869	154	1.0968	LARGE-GAIN	NONFOCAL	14	"KCNS1,MATN4,PABPC1L,PI3,RBPJL,SDC4,SEMG1,SEMG2,SLPI,STK4,TOMM34,WFDC12,WFDC5,YWHAB"
TCGA.DM.A285	20	43904443	45463306	576	0.7467	LARGE-GAIN	NONFOCAL	45	"ACOT8,CD40,CDH22,CTSA,DBNDD2,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,MATN4,MMP9,NCOA5,NEURL2,OCSTAMP,PCIF1,PIGT,PLTP,RBPJL,SDC4,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SNX21,SPATA25,SPINT3,SPINT4,SYS1,TNNC2,TP53RK,TP53TG5,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC13,WFDC2,WFDC3,WFDC6,WFDC8,WFDC9,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AZ.4614	20	43968605	44304707	136	1.5573	LARGE-GAIN	NONFOCAL	14	"DBNDD2,EPPIN,EPPIN-WFDC6,PIGT,SDC4,SPINT3,SYS1,TP53TG5,WFDC10A,WFDC11,WFDC2,WFDC6,WFDC8,WFDC9"
TCGA.AA.3679	20	44204770	45555435	477	1.1468	LARGE-GAIN	NONFOCAL	34	"ACOT8,CD40,CDH22,CTSA,DNTTIP1,ELMO2,EYA2,MMP9,NCOA5,NEURL2,OCSTAMP,PCIF1,PLTP,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SNX21,SPATA25,SPINT4,TNNC2,TP53RK,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC13,WFDC3,WFDC8,WFDC9,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.CK.5914.01A	20	44259491	45173965	204	1.0875	LARGE-GAIN	NONFOCAL	29	"ACOT8,CD40,CDH22,CTSA,DNTTIP1,ELMO2,MMP9,NCOA5,NEURL2,OCSTAMP,PCIF1,PLTP,SLC12A5,SLC35C2,SNX21,SPATA25,SPINT4,TNNC2,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC13,WFDC3,WFDC9,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AZ.4614	20	44307908	45024279	220	1.0478	LARGE-GAIN	NONFOCAL	24	"ACOT8,CD40,CDH22,CTSA,DNTTIP1,ELMO2,MMP9,NCOA5,NEURL2,PCIF1,PLTP,SLC12A5,SLC35C2,SNX21,SPATA25,SPINT4,TNNC2,UBE2C,WFDC10B,WFDC13,WFDC3,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AG.4009.01A	20	44313429	44644838	102	1.8125	LARGE-GAIN	NONFOCAL	18	"ACOT8,CTSA,DNTTIP1,MMP9,NEURL2,PCIF1,PLTP,SNX21,SPATA25,SPINT4,TNNC2,UBE2C,WFDC10B,WFDC13,WFDC3,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AA.3855	20	44380846	59111044	6040	0.7421	LARGE-GAIN	NONFOCAL	107	Too-Many
TCGA.AA.3982	20	44408427	50521235	2169	0.959	LARGE-GAIN	NONFOCAL	59	"ACOT8,ADNP,ARFGEF2,ATP9A,B4GALT5,BCAS4,CD40,CDH22,CEBPB,CSE1L,CTSA,DDX27,DNTTIP1,DPM1,ELMO2,EYA2,FAM65C,KCNB1,KCNG1,LINC01272,MMP9,MOCS3,NCOA3,NCOA5,NEURL2,NFATC2,OCSTAMP,PARD6B,PCIF1,PLTP,PREX1,PTGIS,PTPN1,RNF114,SALL4,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLC9A8,SNAI1,SNX21,SPATA2,SPATA25,STAU1,SULF2,TMEM189,TMEM189-UBE2V1,TNNC2,TP53RK,UBE2C,UBE2V1,WFDC3,ZMYND8,ZNF334,ZNF335,ZNFX1,ZSWIM1,ZSWIM3"
TCGA.AA.A00L.01A	20	44445281	60868790	901	0.8859	LARGE-GAIN	NONFOCAL	113	Too-Many
TCGA.G4.6625	20	44607660	56994631	5018	0.7251	LARGE-GAIN	NONFOCAL	76	"ADNP,ANKRD60,ARFGEF2,ATP9A,AURKA,B4GALT5,BCAS1,BCAS4,BMP7,C20orf85,CASS4,CBLN4,CD40,CDH22,CEBPB,CSE1L,CSTF1,CTCFL,CYP24A1,DDX27,DOK5,DPM1,ELMO2,EYA2,FAM209A,FAM209B,FAM210B,FAM65C,GCNT7,KCNB1,KCNG1,LINC01272,MC3R,MMP9,MOCS3,MTRNR2L3,NCOA3,NCOA5,NFATC2,OCSTAMP,PARD6B,PCK1,PFDN4,PMEPA1,PREX1,PTGIS,PTPN1,RAB22A,RAE1,RBM38,RNF114,RTFDC1,SALL4,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLC9A8,SNAI1,SPATA2,SPO11,STAU1,SULF2,TFAP2C,TMEM189,TMEM189-UBE2V1,TP53RK,TSHZ2,UBE2V1,VAPB,ZBP1,ZFP64,ZMYND8,ZNF217,ZNF334,ZNFX1"
TCGA.AG.A01Y	20	45069749	48932991	1403	0.7539	LARGE-GAIN	NONFOCAL	27	"ARFGEF2,B4GALT5,CEBPB,CSE1L,DDX27,EYA2,KCNB1,LINC01272,NCOA3,OCSTAMP,PREX1,PTGIS,RNF114,SLC13A3,SLC2A10,SLC9A8,SNAI1,SPATA2,STAU1,SULF2,TMEM189,TMEM189-UBE2V1,TP53RK,UBE2V1,ZMYND8,ZNF334,ZNFX1"
TCGA.AG.3909.01A	20	45179081	48491193	257	1.0467	LARGE-GAIN	NONFOCAL	18	"ARFGEF2,B4GALT5,CSE1L,DDX27,EYA2,KCNB1,NCOA3,OCSTAMP,PREX1,PTGIS,SLC13A3,SLC2A10,SLC9A8,STAU1,SULF2,TP53RK,ZMYND8,ZNFX1"
TCGA.AA.A01D.01A	20	45242091	48500376	236	1.458	LARGE-GAIN	NONFOCAL	17	"ARFGEF2,B4GALT5,CSE1L,DDX27,EYA2,KCNB1,NCOA3,PREX1,PTGIS,SLC13A3,SLC2A10,SLC9A8,STAU1,SULF2,TP53RK,ZMYND8,ZNFX1"
TCGA.G4.6303	20	45370735	62912462	6922	0.9483	LARGE-GAIN	NONFOCAL	144	Too-Many
TCGA.AZ.6608	20	45404627	62912462	6876	0.8316	LARGE-GAIN	NONFOCAL	144	Too-Many
TCGA.CK.5914.01A	20	45855889	48127524	201	1.5371	LARGE-GAIN	NONFOCAL	11	"ARFGEF2,CSE1L,DDX27,KCNB1,NCOA3,PREX1,PTGIS,STAU1,SULF2,ZMYND8,ZNFX1"
TCGA.DY.A1DD	20	46043813	62912462	6606	0.9523	LARGE-GAIN	NONFOCAL	142	Too-Many
TCGA.AA.A01F.01A	20	46305230	62904524	883	0.9626	LARGE-GAIN	NONFOCAL	141	Too-Many
TCGA.DM.A285	20	46924116	51498185	1500	0.898	LARGE-GAIN	NONFOCAL	30	"ADNP,ARFGEF2,ATP9A,B4GALT5,BCAS4,CEBPB,CSE1L,DDX27,DPM1,FAM65C,KCNB1,KCNG1,LINC01272,MOCS3,NFATC2,PARD6B,PREX1,PTGIS,PTPN1,RNF114,SALL4,SLC9A8,SNAI1,SPATA2,STAU1,TMEM189,TMEM189-UBE2V1,UBE2V1,ZFP64,ZNFX1"
TCGA.AD.A5EK	20	46965441	57322317	4168	1.3323	LARGE-GAIN	NONFOCAL	63	"ADNP,ANKRD60,APCDD1L,ARFGEF2,ATP9A,AURKA,B4GALT5,BCAS1,BCAS4,BMP7,C20orf85,CASS4,CBLN4,CEBPB,CSE1L,CSTF1,CTCFL,CYP24A1,DDX27,DOK5,DPM1,FAM209A,FAM209B,FAM210B,FAM65C,GCNT7,KCNB1,KCNG1,LINC01272,MC3R,MOCS3,MTRNR2L3,NFATC2,NPEPL1,PARD6B,PCK1,PFDN4,PMEPA1,PREX1,PTGIS,PTPN1,RAB22A,RAE1,RBM38,RNF114,RTFDC1,SALL4,SLC9A8,SNAI1,SPATA2,SPO11,STAU1,STX16,TFAP2C,TMEM189,TMEM189-UBE2V1,TSHZ2,UBE2V1,VAPB,ZBP1,ZFP64,ZNF217,ZNFX1"
TCGA.NH.A8F7	20	47061464	62912462	6137	1.0011	LARGE-GAIN	NONFOCAL	140	Too-Many
TCGA.AA.3955	20	47197335	51543773	1403	0.7223	LARGE-GAIN	NONFOCAL	30	"ADNP,ARFGEF2,ATP9A,B4GALT5,BCAS4,CEBPB,CSE1L,DDX27,DPM1,FAM65C,KCNB1,KCNG1,LINC01272,MOCS3,NFATC2,PARD6B,PREX1,PTGIS,PTPN1,RNF114,SALL4,SLC9A8,SNAI1,SPATA2,STAU1,TMEM189,TMEM189-UBE2V1,UBE2V1,ZFP64,ZNFX1"
TCGA.AG.4015	20	47381633	62912462	6051	0.9949	LARGE-GAIN	NONFOCAL	140	Too-Many
TCGA.AA.A00Q.01A	20	47557650	62904524	885	1.0062	LARGE-GAIN	NONFOCAL	139	Too-Many
TCGA.AG.4009.01A	20	47580305	50223996	209	0.8979	LARGE-GAIN	NONFOCAL	27	"ADNP,ARFGEF2,ATP9A,B4GALT5,BCAS4,CEBPB,CSE1L,DDX27,DPM1,FAM65C,KCNB1,KCNG1,LINC01272,MOCS3,NFATC2,PARD6B,PTGIS,PTPN1,RNF114,SLC9A8,SNAI1,SPATA2,STAU1,TMEM189,TMEM189-UBE2V1,UBE2V1,ZNFX1"
TCGA.A6.6782	20	47713931	49541122	491	1.1136	LARGE-GAIN	NONFOCAL	20	"ADNP,B4GALT5,BCAS4,CEBPB,DDX27,FAM65C,KCNB1,LINC01272,PARD6B,PTGIS,PTPN1,RNF114,SLC9A8,SNAI1,SPATA2,STAU1,TMEM189,TMEM189-UBE2V1,UBE2V1,ZNFX1"
TCGA.AA.3869	20	47831903	51425076	1186	1.3078	LARGE-GAIN	NONFOCAL	26	"ADNP,ATP9A,B4GALT5,BCAS4,CEBPB,DDX27,DPM1,FAM65C,KCNB1,KCNG1,LINC01272,MOCS3,NFATC2,PARD6B,PTGIS,PTPN1,RNF114,SALL4,SLC9A8,SNAI1,SPATA2,TMEM189,TMEM189-UBE2V1,UBE2V1,ZFP64,ZNFX1"
TCGA.AA.3524	20	48031629	49457268	388	0.7841	LARGE-GAIN	NONFOCAL	16	"B4GALT5,BCAS4,CEBPB,FAM65C,KCNB1,LINC01272,PARD6B,PTGIS,PTPN1,RNF114,SLC9A8,SNAI1,SPATA2,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.5M.AATE	20	48220023	62912462	5825	1.0625	LARGE-GAIN	NONFOCAL	132	Too-Many
TCGA.QG.A5Z1	20	48377293	49841431	436	1.1081	LARGE-GAIN	NONFOCAL	17	"ADNP,BCAS4,CEBPB,DPM1,FAM65C,KCNG1,LINC01272,MOCS3,PARD6B,PTPN1,RNF114,SLC9A8,SNAI1,SPATA2,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.CK.5914.01A	20	48494459	49411482	64	1.003	LARGE-GAIN	NONFOCAL	13	"BCAS4,CEBPB,FAM65C,LINC01272,PARD6B,PTPN1,RNF114,SLC9A8,SNAI1,SPATA2,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.AA.A01D.01A	20	48503242	62337947	517	0.8093	LARGE-GAIN	NONFOCAL	112	Too-Many
TCGA.AD.6888	20	48658311	50406629	595	0.9513	LARGE-GAIN	NONFOCAL	16	"ADNP,ATP9A,BCAS4,CEBPB,DPM1,FAM65C,KCNG1,LINC01272,MOCS3,NFATC2,PARD6B,PTPN1,SALL4,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.AG.A02G.01A	20	49224899	62904524	634	0.7802	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.AG.A01N.01A	20	49232490	52675155	95	0.9345	LARGE-GAIN	NONFOCAL	14	"ADNP,ATP9A,BCAS1,BCAS4,DPM1,FAM65C,KCNG1,MOCS3,NFATC2,PARD6B,SALL4,TSHZ2,ZFP64,ZNF217"
TCGA.A6.5660	20	49292685	53019532	1476	0.8758	LARGE-GAIN	NONFOCAL	16	"ADNP,ATP9A,BCAS1,BCAS4,CYP24A1,DPM1,FAM65C,KCNG1,MOCS3,NFATC2,PARD6B,PFDN4,SALL4,TSHZ2,ZFP64,ZNF217"
TCGA.AA.3679	20	49597136	62912462	5458	1.2067	LARGE-GAIN	NONFOCAL	115	Too-Many
TCGA.AA.3524	20	49802644	62912462	5343	0.7394	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.DC.6160.01A	20	50134461	56443023	204	1.1716	LARGE-GAIN	NONFOCAL	30	"ATP9A,AURKA,BCAS1,BMP7,CASS4,CBLN4,CSTF1,CTCFL,CYP24A1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,MTRNR2L3,NFATC2,PCK1,PFDN4,PMEPA1,RAE1,RBM38,RTFDC1,SALL4,SPO11,TFAP2C,TSHZ2,ZBP1,ZFP64,ZNF217"
TCGA.DC.6154	20	51483857	60392718	4211	0.9599	LARGE-GAIN	NONFOCAL	48	"ANKRD60,APCDD1L,ATP5E,AURKA,BCAS1,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CDH4,CSTF1,CTCFL,CTSZ,CYP24A1,DOK5,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PFDN4,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TSHZ2,TUBB1,VAPB,ZBP1,ZNF217,ZNF831"
TCGA.AA.3955	20	51544355	62912462	4722	1.1686	LARGE-GAIN	NONFOCAL	110	Too-Many
TCGA.QG.A5Z1	20	51544355	62912462	4689	0.8374	LARGE-GAIN	NONFOCAL	110	Too-Many
TCGA.F4.6854	20	52181755	62912462	4422	0.7505	LARGE-GAIN	NONFOCAL	109	Too-Many
TCGA.AG.A026	20	52654546	62912462	4252	1.1077	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.AA.3667	20	52658560	62912462	4258	1.0676	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.AZ.5403	20	52658592	62912462	4251	0.7099	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.DM.A0X9	20	52658592	62912462	4251	0.6814	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.AZ.4681	20	52666884	56707252	1970	0.8001	LARGE-GAIN	NONFOCAL	24	"AURKA,BCAS1,BMP7,CASS4,CBLN4,CSTF1,CTCFL,CYP24A1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,MTRNR2L3,PCK1,PFDN4,PMEPA1,RAE1,RBM38,RTFDC1,SPO11,TFAP2C,ZBP1"
TCGA.AA.3869	20	52666884	56735758	1985	1.2879	LARGE-GAIN	NONFOCAL	25	"AURKA,BCAS1,BMP7,C20orf85,CASS4,CBLN4,CSTF1,CTCFL,CYP24A1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,MTRNR2L3,PCK1,PFDN4,PMEPA1,RAE1,RBM38,RTFDC1,SPO11,TFAP2C,ZBP1"
TCGA.AF.3911	20	52666884	62912462	4257	0.7031	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.F4.6459	20	52666884	62912462	4254	0.7245	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.G4.6626	20	52666884	62912462	4256	0.7588	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.CK.5914.01A	20	52675155	55204525	64	1.1702	LARGE-GAIN	NONFOCAL	15	"AURKA,BCAS1,CASS4,CBLN4,CSTF1,CYP24A1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,PFDN4,RTFDC1,TFAP2C"
TCGA.AZ.6605	20	52808778	61447758	3868	1.0539	LARGE-GAIN	NONFOCAL	62	"ADRM1,ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf197,C20orf85,CABLES2,CASS4,CBLN4,CDH26,CDH4,CSTF1,CTCFL,CTSZ,DOK5,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GATA5,GCNT7,GNAS,HRH3,LAMA5,LSM14B,MC3R,MIR1-1HG,MRGBP,MTG2,MTRNR2L3,NELFCD,NPEPL1,NTSR1,OGFR,OSBPL2,PCK1,PFDN4,PHACTR3,PMEPA1,PPP1R3D,PSMA7,RAB22A,RAE1,RBBP8NL,RBM38,RPS21,RTFDC1,SLCO4A1,SLMO2,SPO11,SS18L1,STX16,SYCP2,TAF4,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AA.3697	20	52974465	55594685	1250	0.9049	LARGE-GAIN	NONFOCAL	12	"AURKA,CASS4,CBLN4,CSTF1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,RTFDC1,TFAP2C"
TCGA.AF.A56K	20	53050272	62912462	4043	1.056	LARGE-GAIN	NONFOCAL	105	Too-Many
TCGA.AG.3592	20	53053122	59147493	2869	1.036	LARGE-GAIN	NONFOCAL	42	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CSTF1,CTCFL,CTSZ,DOK5,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.G4.6299	20	53144244	59630900	3117	0.9669	LARGE-GAIN	NONFOCAL	42	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CSTF1,CTCFL,CTSZ,DOK5,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AG.3909.01A	20	53171441	55840713	54	0.921	LARGE-GAIN	NONFOCAL	13	"AURKA,BMP7,CASS4,CBLN4,CSTF1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,RTFDC1,TFAP2C"
TCGA.AG.3742	20	53757602	62912462	3696	0.7779	LARGE-GAIN	NONFOCAL	104	Too-Many
TCGA.AA.3956	20	54261560	58308214	1874	0.6889	LARGE-GAIN	NONFOCAL	36	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf85,CASS4,CBLN4,CSTF1,CTCFL,CTSZ,EDN3,FAM209A,FAM209B,FAM210B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AD.6888	20	54377394	59111044	2214	0.9537	LARGE-GAIN	NONFOCAL	41	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CSTF1,CTCFL,CTSZ,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.NH.A6GB	20	54525991	62912462	3330	1.0044	LARGE-GAIN	NONFOCAL	104	Too-Many
TCGA.AA.3982	20	54831273	55940752	539	0.9773	LARGE-GAIN	NONFOCAL	13	"AURKA,BMP7,CASS4,CSTF1,FAM209A,FAM209B,FAM210B,GCNT7,MTRNR2L3,RAE1,RTFDC1,SPO11,TFAP2C"
TCGA.AA.3941	20	54864674	57796506	1301	1.0079	LARGE-GAIN	NONFOCAL	32	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf85,CASS4,CSTF1,CTCFL,CTSZ,FAM209A,FAM209B,FAM210B,GCNT7,GNAS,MTRNR2L3,NELFCD,NPEPL1,PCK1,PMEPA1,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AA.3972	20	55395787	62912462	2969	1.2111	LARGE-GAIN	NONFOCAL	93	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,BMP7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTCFL,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MTRNR2L3,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCK1,PCMTD2,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RAE1,RBBP8NL,RBM38,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SPO11,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBP1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.AA.3697	20	55595950	57880617	986	1.251	LARGE-GAIN	NONFOCAL	24	"ANKRD60,APCDD1L,ATP5E,BMP7,C20orf85,CTCFL,CTSZ,EDN3,GNAS,MTRNR2L3,NELFCD,NPEPL1,PCK1,PMEPA1,RAB22A,RAE1,RBM38,SLMO2,SPO11,STX16,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AD.6965	20	55918938	57958162	892	0.7869	LARGE-GAIN	NONFOCAL	23	"ANKRD60,APCDD1L,ATP5E,C20orf85,CTCFL,CTSZ,EDN3,GNAS,MTRNR2L3,NELFCD,NPEPL1,PCK1,PMEPA1,RAB22A,RAE1,RBM38,SLMO2,SPO11,STX16,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AA.A00D.01A	20	56063826	60969166	251	0.7981	LARGE-GAIN	NONFOCAL	37	"ADRM1,ANKRD60,APCDD1L,ATP5E,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CTCFL,CTSZ,EDN3,FAM217B,GNAS,HRH3,LAMA5,LSM14B,MTG2,NELFCD,NPEPL1,OSBPL2,PCK1,PHACTR3,PMEPA1,PPP1R3D,PSMA7,RAB22A,RPS21,SLMO2,SS18L1,STX16,SYCP2,TAF4,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.DC.6157	20	56149361	62912462	2553	0.7164	LARGE-GAIN	NONFOCAL	86	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBP1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.DC.6160.01A	20	56447349	59263230	168	0.7529	LARGE-GAIN	NONFOCAL	21	"ANKRD60,APCDD1L,ATP5E,C20orf197,C20orf85,CDH26,CTSZ,EDN3,FAM217B,GNAS,NELFCD,NPEPL1,PHACTR3,PPP1R3D,RAB22A,SLMO2,STX16,SYCP2,TUBB1,VAPB,ZNF831"
TCGA.AG.A01W.01A	20	56479023	62342071	588	0.7194	LARGE-GAIN	NONFOCAL	66	"ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTSZ,DIDO1,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NELFCD,NKAIN4,NPEPL1,NTSR1,OGFR,OSBPL2,PHACTR3,PPDPF,PPP1R3D,PSMA7,PTK6,RAB22A,RBBP8NL,RPS21,RTEL1,SLC17A9,SLCO4A1,SLMO2,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCFL5,TNFRSF6B,TUBB1,VAPB,YTHDF1,ZGPAT,ZNF831"
TCGA.AA.3561	20	56563015	62912462	2353	0.8556	LARGE-GAIN	NONFOCAL	84	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.AA.3869	20	56736673	58252847	629	1.0109	LARGE-GAIN	NONFOCAL	15	"ANKRD60,APCDD1L,ATP5E,CTSZ,EDN3,GNAS,NELFCD,NPEPL1,PHACTR3,RAB22A,SLMO2,STX16,TUBB1,VAPB,ZNF831"
TCGA.D5.6924	20	56891397	62912462	2205	0.7145	LARGE-GAIN	NONFOCAL	82	"ABHD16B,ADRM1,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.G4.6625	20	57003405	58127701	486	1.1699	LARGE-GAIN	NONFOCAL	12	"APCDD1L,ATP5E,CTSZ,EDN3,GNAS,NELFCD,NPEPL1,SLMO2,STX16,TUBB1,VAPB,ZNF831"
TCGA.AD.A5EK	20	57322502	59197642	853	1.0515	LARGE-GAIN	NONFOCAL	14	"ATP5E,C20orf197,CDH26,CTSZ,EDN3,FAM217B,GNAS,NELFCD,PHACTR3,PPP1R3D,SLMO2,SYCP2,TUBB1,ZNF831"
TCGA.AA.3697	20	57884761	60778207	1421	0.8294	LARGE-GAIN	NONFOCAL	13	"C20orf197,CDH26,CDH4,EDN3,FAM217B,LSM14B,MTG2,PHACTR3,PPP1R3D,PSMA7,SS18L1,SYCP2,TAF4"
TCGA.AA.3869	20	58272240	61613863	1395	0.7062	LARGE-GAIN	NONFOCAL	31	"ADRM1,C20orf197,CABLES2,CDH26,CDH4,COL9A3,DIDO1,DPH3P1,FAM217B,GATA5,GID8,HRH3,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,PHACTR3,PPP1R3D,PSMA7,RBBP8NL,RPS21,SLC17A9,SLCO4A1,SS18L1,SYCP2,TAF4,TCFL5"
TCGA.AA.3956	20	58313076	62912462	1606	0.687	LARGE-GAIN	NONFOCAL	69	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.CM.5864	20	58316190	62912462	1606	0.798	LARGE-GAIN	NONFOCAL	69	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DC.6683	20	58609187	62912462	1508	1.0714	LARGE-GAIN	NONFOCAL	64	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3982	20	58735574	61613863	1182	0.8264	LARGE-GAIN	NONFOCAL	25	"ADRM1,CABLES2,CDH4,COL9A3,DIDO1,DPH3P1,GATA5,GID8,HRH3,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,PSMA7,RBBP8NL,RPS21,SLC17A9,SLCO4A1,SS18L1,TAF4,TCFL5"
TCGA.AA.3867	20	59128380	61445311	913	0.836	LARGE-GAIN	NONFOCAL	19	"ADRM1,CABLES2,CDH4,GATA5,HRH3,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,PSMA7,RBBP8NL,RPS21,SLCO4A1,SS18L1,TAF4"
TCGA.AA.3855	20	59128380	62912462	1185	0.7038	LARGE-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AD.6888	20	59139385	62160480	1054	0.9305	LARGE-GAIN	NONFOCAL	36	"ADRM1,ARFGAP1,BHLHE23,BIRC7,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DPH3P1,EEF1A2,GATA5,GID8,HRH3,KCNQ2,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NKAIN4,NTSR1,OGFR,OSBPL2,PPDPF,PSMA7,PTK6,RBBP8NL,RPS21,SLC17A9,SLCO4A1,SS18L1,TAF4,TCFL5,YTHDF1"
TCGA.AA.3968	20	59570370	62912462	946	0.8203	LARGE-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.6648	20	59605123	62912462	932	0.767	LARGE-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3941	20	59616589	62912462	923	1.0441	LARGE-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DC.6160.01A	20	59727157	62185145	532	1.1596	LARGE-GAIN	NONFOCAL	38	"ADRM1,ARFGAP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DPH3P1,EEF1A2,GATA5,GID8,HRH3,KCNQ2,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NKAIN4,NTSR1,OGFR,OSBPL2,PPDPF,PSMA7,PTK6,RBBP8NL,RPS21,SLC17A9,SLCO4A1,SRMS,SS18L1,TAF4,TCFL5,YTHDF1"
TCGA.AZ.4682	20	59901890	62912462	744	0.7025	LARGE-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.3592	20	60095124	62912462	659	1.028	LARGE-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3811	20	60158928	62779291	577	0.8376	LARGE-GAIN	NONFOCAL	61	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DC.6154	20	60392740	62912462	530	1.2302	LARGE-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A00Z.01A	20	60427762	62329622	27	2.6059	LARGE-GAIN	NONFOCAL	43	"ADRM1,ARFGAP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NKAIN4,NTSR1,OGFR,OSBPL2,PPDPF,PSMA7,PTK6,RBBP8NL,RPS21,RTEL1,SLC17A9,SLCO4A1,SRMS,SS18L1,STMN3,TAF4,TCFL5,TNFRSF6B,YTHDF1"
TCGA.AG.3605.01A	20	60427762	62329622	28	1.949	LARGE-GAIN	NONFOCAL	43	"ADRM1,ARFGAP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NKAIN4,NTSR1,OGFR,OSBPL2,PPDPF,PSMA7,PTK6,RBBP8NL,RPS21,RTEL1,SLC17A9,SLCO4A1,SRMS,SS18L1,STMN3,TAF4,TCFL5,TNFRSF6B,YTHDF1"
TCGA.AG.3898	20	60690207	62912462	446	0.8046	LARGE-GAIN	NONFOCAL	61	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.CK.5914.01A	20	60714688	61471843	175	0.7878	LARGE-GAIN	NONFOCAL	17	"ADRM1,CABLES2,COL9A3,GATA5,HRH3,LAMA5,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,PSMA7,RBBP8NL,RPS21,SLCO4A1,SS18L1"
TCGA.AA.3697	20	60798311	62912462	414	1.1456	LARGE-GAIN	NONFOCAL	56	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,KCNQ2,LAMA5,LIME1,LKAAEAR1,MIR1-1HG,MRGBP,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AM.5820	20	60872694	61467984	125	1.1529	LARGE-GAIN	NONFOCAL	12	"ADRM1,CABLES2,COL9A3,GATA5,LAMA5,MIR1-1HG,MRGBP,NTSR1,OGFR,RBBP8NL,RPS21,SLCO4A1"
TCGA.A6.5660	20	60925858	61635444	154	0.7136	LARGE-GAIN	NONFOCAL	16	"CABLES2,COL9A3,DIDO1,DPH3P1,GATA5,GID8,LAMA5,MIR1-1HG,MRGBP,NTSR1,OGFR,RBBP8NL,RPS21,SLC17A9,SLCO4A1,TCFL5"
TCGA.AA.3872	20	61143486	62912462	353	0.7065	LARGE-GAIN	NONFOCAL	49	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MIR1-1HG,MRGBP,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3867	20	61462396	62871231	256	0.9471	LARGE-GAIN	NONFOCAL	43	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.CK.5914.01A	20	61574800	62871066	306	0.8302	LARGE-GAIN	NONFOCAL	39	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3982	20	61614172	62845942	209	1.1192	LARGE-GAIN	NONFOCAL	37	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.3882	20	61744721	62912462	204	0.9481	LARGE-GAIN	NONFOCAL	37	"ABHD16B,ARFGAP1,ARFRP1,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3869	20	61821171	62912462	185	0.758	LARGE-GAIN	NONFOCAL	37	"ABHD16B,ARFGAP1,ARFRP1,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A00D.01A	20	61869539	62612538	97	0.694	LARGE-GAIN	NONFOCAL	28	"ABHD16B,ARFGAP1,ARFRP1,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GMEB2,HELZ2,KCNQ2,LIME1,NKAIN4,PPDPF,PRPF6,PTK6,RTEL1,SAMD10,SLC2A4RG,SRMS,STMN3,TNFRSF6B,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AM.5820	20	62136201	62912462	141	0.7995	LARGE-GAIN	NONFOCAL	29	"ABHD16B,ARFRP1,C20orf195,DNAJC5,GMEB2,HELZ2,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.5660	20	62157645	62476558	52	0.7717	LARGE-GAIN	NONFOCAL	13	"ARFRP1,C20orf195,GMEB2,HELZ2,LIME1,PTK6,RTEL1,SLC2A4RG,SRMS,STMN3,TNFRSF6B,ZBTB46,ZGPAT"
TCGA.AD.6888	20	62209880	62912462	130	0.8901	LARGE-GAIN	NONFOCAL	24	"ABHD16B,ARFRP1,DNAJC5,GMEB2,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.4015	21	14796634	21229620	2138	0.7675	LARGE-GAIN	NONFOCAL	13	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AA.A00N.01A	21	31538234	32253300	35	1.6236	LARGE-GAIN	NONFOCAL	33	"CLDN17,CLDN8,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1"
TCGA.AA.A00Z.01A	21	45211195	46233853	11	1.6945	LARGE-GAIN	NONFOCAL	31	"AGPAT3,AIRE,C21orf2,C21orf33,DNMT3L,ICOSLG,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,PFKL,PWP2,RRP1,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2"
TCGA.AG.3605.01A	21	45732814	46355491	10	1.4443	LARGE-GAIN	NONFOCAL	25	"C21orf2,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,PFKL,PTTG1IP,SUMO3,TRPM2,TSPEAR,UBE2G2"
TCGA.A6.3808.01A	21	45959891	46066326	23	0.9076	LARGE-GAIN	NONFOCAL	11	"KRTAP10-1,KRTAP10-10,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,TSPEAR"
TCGA.RU.A8FL	22	28273287	31446232	719	1.1956	LARGE-GAIN	NONFOCAL	45	"AP1B1,ASCC2,C22orf31,CABP7,CCDC117,CCDC157,CHEK2,DUSP18,EMID1,EWSR1,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HSCB,KREMEN1,LIF,MORC2,MTFP1,MTMR3,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PES1,PITPNB,RASL10A,RFPL1,RHBDD3,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SF3A1,SLC35E4,TBC1D10A,TCN2,THOC5,TTC28,UQCR10,XBP1,ZMAT5,ZNRF3"
TCGA.RU.A8FL	22	31449740	37787324	2469	0.7722	LARGE-GAIN	NONFOCAL	61	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C1QTNF6,C22orf24,C22orf42,CACNG2,CSF2RB,CYTH4,DEPDC5,DRG1,EIF3D,EIF4ENIF1,ELFN2,FBXO7,FOXRED2,HMGXB4,HMOX1,IFT27,IL2RB,INPP5J,ISX,KCTD17,LARGE,LIMK2,MB,MCM5,MPST,MYH9,NCF4,PATZ1,PIK3IP1,PISD,PLA2G3,PRR14L,PVALB,RAC2,RASD2,RBFOX2,RFPL2,RFPL3,RNF185,RTCB,SELM,SFI1,SLC5A1,SLC5A4,SMTN,SSTR3,SYN3,TEX33,TIMP3,TMPRSS6,TOM1,TST,TXN2,YWHAH"
TCGA.AG.A00Y.01A	22	31679041	35799173	265	0.728	LARGE-GAIN	NONFOCAL	26	"BPIFC,C22orf24,C22orf42,DEPDC5,DRG1,EIF4ENIF1,FBXO7,HMGXB4,HMOX1,ISX,LARGE,MCM5,PATZ1,PIK3IP1,PISD,PRR14L,RFPL2,RFPL3,RTCB,SFI1,SLC5A1,SLC5A4,SYN3,TIMP3,TOM1,YWHAH"
TCGA.AA.3941	22	37979149	38300966	48	0.8584	LARGE-GAIN	NONFOCAL	11	"ANKRD54,EIF3L,GALR3,GCAT,GGA1,H1F0,LGALS1,NOL12,PDXP,SH3BP1,TRIOBP"
TCGA.AA.3941	22	39758932	43947102	885	0.8553	LARGE-GAIN	NONFOCAL	67	"A4GALT,ACO2,ADSL,ARFGAP3,ATF4,ATP5L2,BIK,C22orf46,CACNA1I,CCDC134,CENPM,CHADL,CSDC2,CYB5R3,CYP2D6,DESI1,DNAJB7,EFCAB6,ENTHD1,EP300,FAM109B,FAM83F,GRAP2,L3MBTL2,MCAT,MCHR1,MEI1,MGAT3,MIEF1,MKL1,MPPED1,NAGA,NDUFA6,NFAM1,NHP2L1,PACSIN2,PHF5A,PMM1,POLDIP3,POLR3H,RANGAP1,RBX1,RPS19BP1,RRP7A,SCUBE1,SEPT3,SERHL2,SGSM3,SHISA8,SLC25A17,SMDT1,SREBF2,ST13,SYNGR1,TAB1,TCF20,TEF,TNFRSF13C,TNRC6B,TOB2,TSPO,TTLL1,TTLL12,WBP2NL,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AA.3941	22	44112844	46112574	864	0.8012	LARGE-GAIN	NONFOCAL	21	"ARHGAP8,ATXN10,EFCAB6,FAM118A,FBLN1,KIAA0930,KIAA1644,LDOC1L,NUP50,PARVB,PARVG,PHF21B,PNPLA3,PNPLA5,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SMC1B,SULT4A1,UPK3A"
TCGA.AA.3941	22	46213590	48371990	881	0.7536	LARGE-GAIN	NONFOCAL	13	"ATXN10,CDPF1,CELSR1,CERK,GRAMD4,GTSE1,PKDREJ,PPARA,PRR34,TBC1D22A,TRMU,TTC38,WNT7B"
TCGA.AA.3941	22	49722086	51186227	385	0.8232	LARGE-GAIN	NONFOCAL	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.A00J.01A	23	200803	1742010	39	0.7928	LARGE-GAIN	NONFOCAL	12	"AKAP17A,ASMT,ASMTL,CRLF2,CSF2RA,GTPBP6,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6"
TCGA.AA.A00D.01A	23	200803	2707621	68	1.1657	LARGE-GAIN	NONFOCAL	16	"AKAP17A,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6,XG,ZBED1"
TCGA.AA.3861.01A	23	200803	12838736	357	0.8265	LARGE-GAIN	NONFOCAL	47	"AKAP17A,AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CLCN4,CLDN34,CRLF2,CSF2RA,DHRSX,FAM9A,FAM9B,FRMPD4,GPR143,GTPBP6,GYG2,HCCS,HDHD1,IL3RA,MID1,MSL3,MXRA5,NLGN4X,P2RY8,PLCXD1,PNPLA4,PPP2R3B,PRKX,PRPS2,SHOX,SHROOM2,SLC25A6,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1"
TCGA.AA.A00K.01A	23	200803	102967140	3425	0.9498	LARGE-GAIN	NONFOCAL	499	Too-Many
TCGA.AG.A01N.01A	23	1553847	47045434	1567	0.7832	LARGE-GAIN	NONFOCAL	179	Too-Many
TCGA.AA.A00L.01A	23	2692667	7137631	76	1.154	LARGE-GAIN	NONFOCAL	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.CM.5860	23	2703632	7157127	1734	0.6885	LARGE-GAIN	NONFOCAL	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.DC.6158	23	2703632	9757524	2661	1.1195	LARGE-GAIN	NONFOCAL	22	"ANOS1,ARSD,ARSE,ARSF,ARSH,FAM9A,FAM9B,GPR143,GYG2,HDHD1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,XG"
TCGA.DT.5265	23	2703632	10884012	3043	1.454	LARGE-GAIN	NONFOCAL	26	"ANOS1,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HDHD1,MID1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.AA.3975	23	2703632	19224459	5293	0.8804	LARGE-GAIN	NONFOCAL	76	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CTPS2,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.EI.6511	23	2703632	19723879	5458	0.72	LARGE-GAIN	NONFOCAL	79	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CTPS2,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MAP3K15,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.AG.3898	23	2703632	22795990	6265	0.971	LARGE-GAIN	NONFOCAL	91	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,YY2,ZNF645,ZRSR2"
TCGA.5M.AATE	23	2703632	22807378	6254	0.7926	LARGE-GAIN	NONFOCAL	91	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,YY2,ZNF645,ZRSR2"
TCGA.5M.AAT4	23	2703632	22824547	6281	0.7938	LARGE-GAIN	NONFOCAL	91	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,YY2,ZNF645,ZRSR2"
TCGA.AA.3841	23	2703632	37919998	10728	1.1076	LARGE-GAIN	NONFOCAL	138	Too-Many
TCGA.D5.5541	23	2703632	62808622	14434	0.9833	LARGE-GAIN	NONFOCAL	315	Too-Many
TCGA.DM.A0XD	23	2703632	64711702	14379	0.7267	LARGE-GAIN	NONFOCAL	321	Too-Many
TCGA.AG.3893	23	2703632	68447360	14914	0.803	LARGE-GAIN	NONFOCAL	332	Too-Many
TCGA.DM.A1DA	23	2703632	83693036	18003	0.6854	LARGE-GAIN	NONFOCAL	413	Too-Many
TCGA.AA.A02Y	23	2703632	88430562	19259	0.8316	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.AD.A5EK	23	2703632	88442046	19151	0.8763	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.DM.A1DB	23	2703632	88444271	19323	1.3072	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.AA.3688	23	2703632	88444551	19427	0.9001	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.G4.6294	23	2703632	88444551	19380	0.9166	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.AH.6903	23	2703632	88494864	19346	0.7574	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.D5.6532	23	2703632	88581566	19075	0.8765	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.CM.6169	23	2703632	88599310	18727	0.8545	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.AG.4008	23	2703632	90748416	19381	1.0029	LARGE-GAIN	NONFOCAL	423	Too-Many
TCGA.AH.6897	23	2703632	90748416	19666	0.9287	LARGE-GAIN	NONFOCAL	423	Too-Many
TCGA.D5.6924	23	2703632	90748416	19622	0.976	LARGE-GAIN	NONFOCAL	423	Too-Many
TCGA.DC.5337	23	2703632	90751925	19566	0.8854	LARGE-GAIN	NONFOCAL	423	Too-Many
TCGA.AA.3973	23	2703632	93429577	20136	0.974	LARGE-GAIN	NONFOCAL	426	Too-Many
TCGA.CM.6678	23	2703632	95747647	20837	0.7736	LARGE-GAIN	NONFOCAL	426	Too-Many
TCGA.EI.6513	23	2703632	143497861	32191	0.7093	LARGE-GAIN	NONFOCAL	689	Too-Many
TCGA.A6.5666	23	2703632	144317404	32538	0.9167	LARGE-GAIN	NONFOCAL	689	Too-Many
TCGA.T9.A92H	23	2703632	148885328	33445	0.8289	LARGE-GAIN	NONFOCAL	705	Too-Many
TCGA.A6.5656	23	2703632	154925044	34782	0.9044	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.A6.5659	23	2703632	154925044	31384	1.4351	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.A6.6140	23	2703632	154925044	35467	0.75	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3519	23	2703632	154925044	35102	0.8256	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3549	23	2703632	154925044	35092	0.7803	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3655	23	2703632	154925044	35322	0.887	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3696	23	2703632	154925044	35663	0.7937	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3818	23	2703632	154925044	35661	0.7796	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3837	23	2703632	154925044	35513	0.7487	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.A01Z	23	2703632	154925044	35320	0.8425	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.A02O	23	2703632	154925044	35270	0.8638	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AD.6888	23	2703632	154925044	35195	0.7644	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AF.6655	23	2703632	154925044	34852	0.7557	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AF.A56K	23	2703632	154925044	34989	0.906	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AG.3728	23	2703632	154925044	35531	0.7796	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AY.A8YK	23	2703632	154925044	35249	0.9562	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.AZ.4682	23	2703632	154925044	35359	0.815	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.CA.6715	23	2703632	154925044	35085	0.9297	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.CL.5918	23	2703632	154925044	35417	1.1466	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.CM.5864	23	2703632	154925044	35273	0.7762	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.D5.6531	23	2703632	154925044	34753	0.9065	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.D5.6537	23	2703632	154925044	33728	0.8663	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.DC.6683	23	2703632	154925044	35228	0.788	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.G4.6306	23	2703632	154925044	35232	0.8348	LARGE-GAIN	NONFOCAL	808	Too-Many
TCGA.A6.5660	23	2706943	88444551	18760	0.7087	LARGE-GAIN	NONFOCAL	421	Too-Many
TCGA.CK.4952.01A	23	2710042	35899638	1190	0.7787	LARGE-GAIN	NONFOCAL	128	Too-Many
TCGA.AA.A00D.01A	23	2712523	23685666	816	0.7008	LARGE-GAIN	NONFOCAL	94	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,DDX53,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRDX4,PRKX,PRPS2,PTCHD1,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,YY2,ZNF645,ZRSR2"
TCGA.AG.A014.01A	23	2715300	30696024	987	0.9937	LARGE-GAIN	NONFOCAL	121	Too-Many
TCGA.AA.3509.01A	23	2726147	15646052	437	1.418	LARGE-GAIN	NONFOCAL	55	"ACE2,AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BMX,CLCN4,CLDN34,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GYG2,HCCS,HDHD1,MID1,MOSPD2,MSL3,MXRA5,NLGN4X,OFD1,PIGA,PIR,PNPLA4,PRKX,PRPS2,RAB9A,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.AA.A00N.01A	23	2873408	7869982	67	0.7375	LARGE-GAIN	NONFOCAL	11	"ARSE,ARSF,ARSH,HDHD1,MXRA5,NLGN4X,PNPLA4,PRKX,STS,VCX,VCX3A"
TCGA.EI.7002	23	3585464	28634031	7663	1.2733	LARGE-GAIN	NONFOCAL	107	Too-Many
TCGA.CL.5917	23	6350730	22850575	4872	0.7944	LARGE-GAIN	NONFOCAL	82	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,HDHD1,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,NHS,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,YY2,ZNF645,ZRSR2"
TCGA.AF.3913	23	6982967	154925044	33522	0.7669	LARGE-GAIN	NONFOCAL	798	Too-Many
TCGA.SS.A7HO	23	6989602	62732674	12682	0.8249	LARGE-GAIN	NONFOCAL	305	Too-Many
TCGA.AG.3883	23	7002836	69290069	13898	0.7901	LARGE-GAIN	NONFOCAL	326	Too-Many
TCGA.DM.A28H	23	7014766	154925044	33512	0.8548	LARGE-GAIN	NONFOCAL	798	Too-Many
TCGA.DM.A28F	23	7147330	91551376	17987	0.8517	LARGE-GAIN	NONFOCAL	413	Too-Many
TCGA.AY.6196	23	7307439	48206830	10958	0.7928	LARGE-GAIN	NONFOCAL	179	Too-Many
TCGA.CM.5860	23	7744749	154925044	33197	0.7064	LARGE-GAIN	NONFOCAL	796	Too-Many
TCGA.AG.3592	23	7830763	154925044	33443	0.7825	LARGE-GAIN	NONFOCAL	795	Too-Many
TCGA.AA.A00L.01A	23	7868675	24228303	799	1.2722	LARGE-GAIN	NONFOCAL	88	"ACE2,ACOT9,ADGRG2,AMELX,ANOS1,AP1S2,APOO,ARHGAP6,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,CXorf58,DDX53,EGFL6,EIF1AX,EIF2S3,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,KLHL15,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,NHS,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRDX4,PRPS2,PTCHD1,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SAT1,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX2,VCX3B,WWC3,YY2,ZFX,ZNF645,ZRSR2"
TCGA.AA.3967.01A	23	8763347	19587167	581	0.9155	LARGE-GAIN	NONFOCAL	62	"ACE2,ADGRG2,AMELX,AP1S2,ARHGAP6,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CTPS2,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,MAGEB17,MAP3K15,MID1,MOSPD2,MSL3,NHS,OFD1,PDHA1,PHKA2,PIGA,PIR,PPEF1,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,WWC3,ZRSR2"
TCGA.AG.A02G.01A	23	9621579	12516787	107	0.9907	LARGE-GAIN	NONFOCAL	12	"AMELX,ARHGAP6,CLCN4,CLDN34,FRMPD4,GPR143,HCCS,MID1,MSL3,SHROOM2,TBL1X,WWC3"
TCGA.DC.6158	23	9825087	83721810	15134	1.1239	LARGE-GAIN	NONFOCAL	392	Too-Many
TCGA.AA.3861.01A	23	12840773	17749948	288	1.3146	LARGE-GAIN	NONFOCAL	36	"ACE2,AP1S2,ASB11,ASB9,ATXN3L,BMX,CA5B,CTPS2,EGFL6,FAM9C,FANCB,FIGF,GEMIN8,GLRA2,GPM6B,GRPR,MAGEB17,MOSPD2,NHS,OFD1,PIGA,PIR,PRPS2,RAB9A,RBBP7,REPS2,S100G,SYAP1,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,ZRSR2"
TCGA.AA.3862.01A	23	12840773	17749948	287	0.9883	LARGE-GAIN	NONFOCAL	36	"ACE2,AP1S2,ASB11,ASB9,ATXN3L,BMX,CA5B,CTPS2,EGFL6,FAM9C,FANCB,FIGF,GEMIN8,GLRA2,GPM6B,GRPR,MAGEB17,MOSPD2,NHS,OFD1,PIGA,PIR,PRPS2,RAB9A,RBBP7,REPS2,S100G,SYAP1,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,ZRSR2"
TCGA.DT.5265	23	13065599	23124979	2571	1.4667	LARGE-GAIN	NONFOCAL	56	"ACE2,ADGRG2,AP1S2,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CNKSR2,CTPS2,CXorf23,DDX53,EGFL6,EIF1AX,FANCB,FIGF,GEMIN8,GLRA2,GPM6B,GRPR,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MOSPD2,NHS,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PPEF1,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SMPX,SMS,SYAP1,TCEANC,TMEM27,TRAPPC2,TXLNG,YY2,ZNF645,ZRSR2"
TCGA.AA.A00Q.01A	23	13336947	40594431	1011	0.7319	LARGE-GAIN	NONFOCAL	112	Too-Many
TCGA.DC.4745	23	14894809	16148402	381	0.9695	LARGE-GAIN	NONFOCAL	13	"ACE2,AP1S2,ASB11,ASB9,BMX,CA5B,FIGF,GRPR,MOSPD2,PIGA,PIR,TMEM27,ZRSR2"
TCGA.AA.3975	23	19478042	128658341	22474	0.8699	LARGE-GAIN	NONFOCAL	524	Too-Many
TCGA.AA.3967.01A	23	19613003	47755195	904	0.8098	LARGE-GAIN	NONFOCAL	106	Too-Many
TCGA.EI.6511	23	20101841	88443281	13586	0.7278	LARGE-GAIN	NONFOCAL	341	Too-Many
TCGA.AA.3861.01A	23	20134821	47919780	939	1.0078	LARGE-GAIN	NONFOCAL	108	Too-Many
TCGA.AG.3898	23	22807378	88402518	12987	0.9716	LARGE-GAIN	NONFOCAL	330	Too-Many
TCGA.5M.AATE	23	22828077	79091332	10732	0.7962	LARGE-GAIN	NONFOCAL	313	Too-Many
TCGA.5M.AAT4	23	22834647	32990742	3201	0.75	LARGE-GAIN	NONFOCAL	33	"ACOT9,APOO,ARX,CXorf21,CXorf58,DCAF8L1,DCAF8L2,DDX53,DMD,EIF2S3,FTHL17,GK,IL1RAPL1,KLHL15,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,PCYT1B,PDK3,POLA1,PRDX4,PTCHD1,SAT1,SUPT20HL1,SUPT20HL2,TAB3,ZFX"
TCGA.DT.5265	23	23125966	24438009	489	1.9202	LARGE-GAIN	NONFOCAL	11	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,PRDX4,PTCHD1,SAT1,SUPT20HL1,SUPT20HL2,ZFX"
TCGA.CL.5917	23	23525101	132473644	22714	0.9152	LARGE-GAIN	NONFOCAL	534	Too-Many
TCGA.AA.3509.01A	23	24228303	31164361	136	1.4301	LARGE-GAIN	NONFOCAL	24	"ARX,CXorf21,DCAF8L1,DCAF8L2,DMD,FTHL17,GK,IL1RAPL1,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,PCYT1B,PDK3,POLA1,SUPT20HL1,SUPT20HL2,TAB3,ZFX"
TCGA.AA.A00L.01A	23	24512842	47466288	642	1.1599	LARGE-GAIN	NONFOCAL	77	"ARAF,ARX,ATP6AP2,BCOR,CASK,CDK16,CFAP47,CHST7,CXorf21,CXorf36,CXorf38,CYBB,DCAF8L1,DCAF8L2,DDX3X,DMD,DUSP21,DYNLT3,EFHC2,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,FUNDC1,GK,GPR34,GPR82,HYPM,IL1RAPL1,JADE3,KDM6A,KRBOX4,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NDUFB11,NR0B1,NYX,OTC,PCYT1B,PDK3,POLA1,PRRG1,RBM10,RGN,RP2,RPGR,SLC9A7,SRPX,SYN1,SYTL5,TAB3,TIMP1,TMEM47,TSPAN7,UBA1,USP11,USP9X,XK,ZNF157,ZNF41,ZNF674"
TCGA.DT.5265	23	27693108	154925044	27481	0.7595	LARGE-GAIN	NONFOCAL	698	Too-Many
TCGA.AG.A014.01A	23	30709200	37984574	188	0.7059	LARGE-GAIN	NONFOCAL	18	"CFAP47,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,HYPM,LANCL3,MAGEB16,PRRG1,SYTL5,TAB3,TMEM47,XK"
TCGA.AA.3509.01A	23	31165391	37979559	170	1.9707	LARGE-GAIN	NONFOCAL	15	"CFAP47,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,HYPM,LANCL3,MAGEB16,PRRG1,SYTL5,TMEM47,XK"
TCGA.AZ.4684.01A	23	31165391	38019218	177	0.8616	LARGE-GAIN	NONFOCAL	16	"CFAP47,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,HYPM,LANCL3,MAGEB16,PRRG1,SRPX,SYTL5,TMEM47,XK"
TCGA.5M.AAT4	23	33041453	88442885	9784	0.7744	LARGE-GAIN	NONFOCAL	298	Too-Many
TCGA.CK.4952.01A	23	36294963	106297498	2714	0.7291	LARGE-GAIN	NONFOCAL	376	Too-Many
TCGA.CA.6719	23	37355253	154925044	24525	0.7715	LARGE-GAIN	NONFOCAL	676	Too-Many
TCGA.AA.3509.01A	23	37981286	49594969	739	1.3229	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.AG.A014.01A	23	37985799	70626451	1552	0.9756	LARGE-GAIN	NONFOCAL	222	Too-Many
TCGA.AA.3841	23	39252958	55100048	2709	1.1667	LARGE-GAIN	NONFOCAL	153	Too-Many
TCGA.AA.A00Q.01A	23	41333313	46952224	147	0.7498	LARGE-GAIN	NONFOCAL	19	"CASK,CHST7,CXorf36,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,NDP,NYX,RGN,RP2,SLC9A7,ZNF674"
TCGA.AA.3844	23	46960925	47507740	95	0.7944	LARGE-GAIN	NONFOCAL	12	"ARAF,CDK16,CFP,ELK1,NDUFB11,RBM10,SYN1,TIMP1,UBA1,USP11,ZNF157,ZNF41"
TCGA.AA.A00L.01A	23	47496221	48897935	177	1.1415	LARGE-GAIN	NONFOCAL	34	"EBP,ELK1,ERAS,FTSJ1,GATA1,GLOD5,GRIPAP1,HDAC6,KCND1,OTUD5,PCSK1N,PIM2,PORCN,PQBP1,RBM3,SLC35A2,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,TBC1D25,TFE3,TIMM17B,UXT,WAS,WDR13,ZNF182,ZNF630,ZNF81"
TCGA.AA.3967.01A	23	48317268	99662997	1670	0.7175	LARGE-GAIN	NONFOCAL	236	Too-Many
TCGA.AA.3861.01A	23	48317870	67936155	886	0.9003	LARGE-GAIN	NONFOCAL	137	Too-Many
TCGA.AA.A00L.01A	23	49103917	50090576	65	1.2183	LARGE-GAIN	NONFOCAL	31	"AKAP4,CCDC22,CCNB3,CLCN5,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,PAGE1,PAGE4,PPP1R3F,USP27X"
TCGA.AG.A01N.01A	23	49142296	49846290	28	0.7866	LARGE-GAIN	NONFOCAL	27	"CLCN5,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,PAGE1,PAGE4,PPP1R3F,USP27X"
TCGA.AA.A00N.01A	23	49452084	52682447	115	0.7009	LARGE-GAIN	NONFOCAL	20	"AKAP4,BMP15,CCNB3,CLCN5,CXorf67,DGKK,GSPT2,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,PAGE1,PAGE4,SHROOM4,SSX7,USP27X,XAGE1B,XAGE1E,XAGE2"
TCGA.AA.3509.01A	23	49595542	51486686	90	1.6462	LARGE-GAIN	NONFOCAL	12	"AKAP4,BMP15,CCNB3,CLCN5,CXorf67,DGKK,GSPT2,NUDT10,NUDT11,PAGE4,SHROOM4,USP27X"
TCGA.AZ.6607	23	49720867	58496484	1186	0.7361	LARGE-GAIN	NONFOCAL	62	"AKAP4,ALAS2,APEX2,BMP15,CCNB3,CLCN5,CXorf67,DGKK,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTRNR2L10,NUDT10,NUDT11,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SHROOM4,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5,ZXDA,ZXDB"
TCGA.AA.A00L.01A	23	50094193	51928981	37	0.8266	LARGE-GAIN	NONFOCAL	11	"BMP15,CCNB3,CXorf67,DGKK,GSPT2,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,SHROOM4"
TCGA.AA.3509.01A	23	51487101	69749636	692	1.3497	LARGE-GAIN	NONFOCAL	86	"ALAS2,AMER1,APEX2,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,DLG3,EDA,EDA2R,EFNB1,FAAH2,FAM104B,FAM120C,FAM155B,FAM156A,FAM156B,FGD1,FOXR2,GDPD2,GNL3L,GPR173,GSPT2,HEPH,HSD17B10,HUWE1,IGBP1,IQSEC2,ITIH6,KDM5C,KIF4A,KLF8,LAS1L,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,OTUD6A,P2RY4,PAGE2,PAGE2B,PAGE3,PAGE5,PDZD11,PFKFB1,PHF8,PJA1,RAB41,RIBC1,RRAGB,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SPIN4,SSX2,SSX2B,SSX7,STARD8,TEX11,TRO,TSPYL2,TSR2,UBQLN2,USP51,VSIG4,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AZ.4614	23	51887759	54222644	169	1.0619	LARGE-GAIN	NONFOCAL	24	"FAM120C,FAM156A,FAM156B,GPR173,HSD17B10,HUWE1,IQSEC2,KDM5C,MAGED4,MAGED4B,PHF8,RIBC1,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AA.A00L.01A	23	52677259	53584108	101	1.2663	LARGE-GAIN	NONFOCAL	16	"FAM156A,FAM156B,GPR173,HSD17B10,HUWE1,IQSEC2,KDM5C,RIBC1,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,XAGE3,XAGE5"
TCGA.D5.6923	23	52821869	88491811	5627	1.0418	LARGE-GAIN	NONFOCAL	150	Too-Many
TCGA.AA.3712	23	52821869	154925044	21614	0.8634	LARGE-GAIN	NONFOCAL	537	Too-Many
TCGA.AA.A00L.01A	23	54026250	69639880	447	1.1594	LARGE-GAIN	NONFOCAL	60	"ALAS2,AMER1,APEX2,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAAH2,FAM104B,FAM120C,FAM155B,FGD1,FOXR2,GNL3L,HEPH,IGBP1,ITIH6,KIF4A,KLF8,LAS1L,MAGED2,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,OTUD6A,P2RY4,PAGE2,PAGE2B,PAGE3,PAGE5,PDZD11,PFKFB1,PHF8,PJA1,RAB41,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,TRO,TSR2,UBQLN2,USP51,VSIG4,WNK3,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AZ.4614	23	54237965	55248375	131	1.7898	LARGE-GAIN	NONFOCAL	15	"ALAS2,APEX2,FAM104B,FGD1,GNL3L,ITIH6,MAGED2,MTRNR2L10,PAGE2,PAGE2B,PAGE5,PFKFB1,TRO,TSR2,WNK3"
TCGA.AA.A00N.01A	23	54776277	55479496	87	0.8732	LARGE-GAIN	NONFOCAL	13	"ALAS2,APEX2,FAM104B,ITIH6,MAGED2,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,TRO"
TCGA.AA.A00D.01A	23	55102419	56276624	36	0.7573	LARGE-GAIN	NONFOCAL	11	"FAM104B,FOXR2,KLF8,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,RRAGB,USP51"
TCGA.AA.3841	23	55123383	90711047	5719	1.105	LARGE-GAIN	NONFOCAL	125	Too-Many
TCGA.A6.A56B	23	56782858	64146643	400	0.7593	LARGE-GAIN	NONFOCAL	12	"AMER1,ARHGEF9,ASB12,FAAH2,MTMR8,SPIN2A,SPIN2B,SPIN3,SPIN4,ZC4H2,ZXDA,ZXDB"
TCGA.D5.6931	23	58496484	88491811	4887	0.9878	LARGE-GAIN	NONFOCAL	107	Too-Many
TCGA.AA.A00N.01A	23	62855147	67316671	117	0.9446	LARGE-GAIN	NONFOCAL	13	"AMER1,AR,ARHGEF9,ASB12,EDA2R,HEPH,LAS1L,MSN,MTMR8,OPHN1,VSIG4,ZC3H12B,ZC4H2"
TCGA.D5.5541	23	63479144	154925044	20745	0.7014	LARGE-GAIN	NONFOCAL	490	Too-Many
TCGA.DM.A0XD	23	64712353	154925044	20214	1.1253	LARGE-GAIN	NONFOCAL	488	Too-Many
TCGA.AA.3861.01A	23	67937017	106116782	1223	1.2568	LARGE-GAIN	NONFOCAL	172	Too-Many
TCGA.AA.3862.01A	23	67937017	106116782	1228	0.9708	LARGE-GAIN	NONFOCAL	172	Too-Many
TCGA.AG.3893	23	68985701	154925044	19175	1.2414	LARGE-GAIN	NONFOCAL	475	Too-Many
TCGA.AA.A00Q.01A	23	69712308	101408865	839	0.7229	LARGE-GAIN	NONFOCAL	113	Too-Many
TCGA.CM.5348	23	69779068	154925044	19472	0.6916	LARGE-GAIN	NONFOCAL	462	Too-Many
TCGA.AA.3509.01A	23	69898608	71417208	214	1.1975	LARGE-GAIN	NONFOCAL	22	"ACRC,CXCR3,CXorf49,CXorf49B,CXorf65,FLJ44635,FOXO4,GJB1,IL2RG,ITGB1BP2,MED12,NHSL2,NLGN3,NONO,OGT,PIN4,RGAG4,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.AA.A00L.01A	23	70323788	99661422	577	1.157	LARGE-GAIN	NONFOCAL	79	"ABCB7,ACRC,APOOL,ATP7A,ATRX,BRWD3,CDX4,CHIC1,CHM,CITED1,COX7B,CPXCR1,CXCR3,CXorf49,CXorf49B,CXorf65,CYLC1,CYSLTR1,DACH2,DIAPH2,DMRTC1,DMRTC1B,ERCC6L,FAM133A,FAM46D,FGF16,FLJ44635,GJB1,GPR174,HDAC8,HDX,HMGN5,IL2RG,ITGB1BP2,ITM2A,KIAA2022,KLHL4,LPAR4,MAGEE1,MAGEE2,MAGT1,MED12,NAP1L2,NAP1L3,NHSL2,NLGN3,NONO,OGT,P2RY10,PABPC1L2A,PABPC1L2B,PABPC5,PBDC1,PCDH11X,PCDH19,PGAM4,PGK1,PHKA1,PIN4,POF1B,POU3F4,RGAG4,RLIM,RPA4,RPS4X,RPS6KA6,SATL1,SH3BGRL,SLC16A2,TAF1,TAF9B,TBX22,TGIF2LX,UPRT,ZCCHC13,ZCCHC5,ZDHHC15,ZMYM3,ZNF711"
TCGA.AG.A014.01A	23	71549444	80001057	269	0.8226	LARGE-GAIN	NONFOCAL	36	"ABCB7,ATP7A,ATRX,BRWD3,CDX4,CHIC1,COX7B,CYSLTR1,DMRTC1,DMRTC1B,FAM46D,FGF16,GPR174,HDAC8,ITM2A,KIAA2022,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,PHKA1,RLIM,SLC16A2,TAF9B,TBX22,UPRT,ZCCHC13,ZCCHC5,ZDHHC15"
TCGA.AA.3509.01A	23	71571536	76940368	151	1.8308	LARGE-GAIN	NONFOCAL	21	"ABCB7,ATRX,CDX4,CHIC1,DMRTC1,DMRTC1B,FGF16,HDAC8,KIAA2022,MAGEE1,MAGEE2,NAP1L2,PABPC1L2A,PABPC1L2B,PBDC1,PHKA1,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.AZ.4684.01A	23	71681815	76940368	150	0.6941	LARGE-GAIN	NONFOCAL	21	"ABCB7,ATRX,CDX4,CHIC1,DMRTC1,DMRTC1B,FGF16,HDAC8,KIAA2022,MAGEE1,MAGEE2,NAP1L2,PABPC1L2A,PABPC1L2B,PBDC1,PHKA1,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.CM.6675	23	72207910	154925044	19190	0.9501	LARGE-GAIN	NONFOCAL	433	Too-Many
TCGA.AG.3883	23	76437472	121127281	9858	0.7563	LARGE-GAIN	NONFOCAL	199	Too-Many
TCGA.AA.3509.01A	23	77394986	83116103	68	1.8374	LARGE-GAIN	NONFOCAL	13	"BRWD3,CYSLTR1,FAM46D,GPR174,HMGN5,ITM2A,LPAR4,P2RY10,POU3F4,SH3BGRL,TAF9B,TBX22,ZCCHC5"
TCGA.SS.A7HO	23	77532102	81047526	748	0.8232	LARGE-GAIN	NONFOCAL	11	"BRWD3,CYSLTR1,FAM46D,GPR174,HMGN5,ITM2A,LPAR4,P2RY10,SH3BGRL,TBX22,ZCCHC5"
TCGA.F5.6810	23	78624738	88521685	2456	0.6825	LARGE-GAIN	NONFOCAL	17	"APOOL,BRWD3,CHM,CPXCR1,CYLC1,DACH2,FAM46D,HDX,HMGN5,KLHL4,POF1B,POU3F4,RPS6KA6,SATL1,SH3BGRL,TBX22,ZNF711"
TCGA.5M.AATE	23	79099840	96481263	3864	0.7478	LARGE-GAIN	NONFOCAL	24	"APOOL,BRWD3,CHM,CPXCR1,CYLC1,DACH2,DIAPH2,FAM133A,FAM46D,HDX,HMGN5,KLHL4,NAP1L3,PABPC5,PCDH11X,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TBX22,TGIF2LX,ZNF711"
TCGA.AZ.4684.01A	23	80047302	96502675	161	0.9635	LARGE-GAIN	NONFOCAL	22	"APOOL,BRWD3,CHM,CPXCR1,CYLC1,DACH2,DIAPH2,FAM133A,HDX,HMGN5,KLHL4,NAP1L3,PABPC5,PCDH11X,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TGIF2LX,ZNF711"
TCGA.AA.A00D.01A	23	85158586	99917136	94	0.9033	LARGE-GAIN	NONFOCAL	15	"CHM,CPXCR1,DACH2,DIAPH2,FAM133A,KLHL4,NAP1L3,PABPC5,PCDH11X,PCDH19,RPA4,SRPX2,TGIF2LX,TNMD,TSPAN6"
TCGA.AA.3509.01A	23	85218668	96139303	52	1.8303	LARGE-GAIN	NONFOCAL	11	"CHM,CPXCR1,DACH2,DIAPH2,FAM133A,KLHL4,NAP1L3,PABPC5,PCDH11X,RPA4,TGIF2LX"
TCGA.AA.A00N.01A	23	85282432	99605577	76	0.8814	LARGE-GAIN	NONFOCAL	12	"CHM,CPXCR1,DACH2,DIAPH2,FAM133A,KLHL4,NAP1L3,PABPC5,PCDH11X,PCDH19,RPA4,TGIF2LX"
TCGA.DC.6158	23	89127684	154925044	15842	1.1182	LARGE-GAIN	NONFOCAL	387	Too-Many
TCGA.D5.6532	23	90059027	154925044	15512	0.8412	LARGE-GAIN	NONFOCAL	386	Too-Many
TCGA.A6.5660	23	90288179	154925044	15310	0.6872	LARGE-GAIN	NONFOCAL	386	Too-Many
TCGA.AG.3898	23	90288179	154925044	15732	1.035	LARGE-GAIN	NONFOCAL	386	Too-Many
TCGA.AA.3688	23	90288633	154925044	15833	0.8786	LARGE-GAIN	NONFOCAL	386	Too-Many
TCGA.D5.6924	23	91363046	154925044	15586	0.9533	LARGE-GAIN	NONFOCAL	385	Too-Many
TCGA.EI.6511	23	91430328	141050747	11403	0.7178	LARGE-GAIN	NONFOCAL	260	Too-Many
TCGA.D5.6931	23	91476336	104399244	2747	0.9802	LARGE-GAIN	NONFOCAL	71	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CSTF2,DIAPH2,DRP2,ESX1,FAM133A,FAM199X,GLA,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,HNRNPH2,IL1RAPL2,MORF4L2,NAP1L3,NGFRAP1,NOX1,NXF2,NXF2B,NXF3,NXF5,PCDH11X,PCDH19,PLP1,RAB40A,RAB40AL,RAB9B,RPA4,RPL36A,RPL36A-HNRNPH2,SLC25A53,SRPX2,SYTL4,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TIMM8A,TMEM31,TMEM35,TMSB15A,TMSB15B,TNMD,TRMT2B,TSPAN6,WBP5,XKRX,ZCCHC18,ZMAT1"
TCGA.F5.6810	23	92134590	122994860	7240	0.6786	LARGE-GAIN	NONFOCAL	168	Too-Many
TCGA.AA.3841	23	92358868	112097113	4128	1.0843	LARGE-GAIN	NONFOCAL	111	Too-Many
TCGA.5M.AAT4	23	92358868	134740298	9719	0.798	LARGE-GAIN	NONFOCAL	219	Too-Many
TCGA.AH.6897	23	92358868	154925044	15495	0.9034	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.D5.6923	23	92358868	154925044	15420	1.0358	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.G4.6294	23	92363392	127304870	8294	0.9038	LARGE-GAIN	NONFOCAL	176	Too-Many
TCGA.CM.6169	23	92383781	150876754	14293	0.8435	LARGE-GAIN	NONFOCAL	292	Too-Many
TCGA.DM.A1DB	23	92383781	154925044	15470	1.2905	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.DM.A28F	23	92384153	154925044	15421	0.8268	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.AA.A02Y	23	92392410	154925044	15434	0.8201	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.AH.6903	23	92392410	154925044	15496	0.746	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.DC.5337	23	92421112	154925044	15397	0.8792	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.AG.4008	23	92427942	152193077	14847	0.981	LARGE-GAIN	NONFOCAL	312	Too-Many
TCGA.AD.A5EK	23	92464902	154925044	15333	0.8394	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.AA.3664	23	92510130	154925044	15524	0.8448	LARGE-GAIN	NONFOCAL	384	Too-Many
TCGA.AA.3973	23	93448520	108600978	3044	0.9348	LARGE-GAIN	NONFOCAL	92	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,ATG4A,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CLDN2,COL4A5,COL4A6,CSTF2,CXorf57,DIAPH2,DRP2,ESX1,FAM199X,FRMPD3,GLA,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,HNRNPH2,IL1RAPL2,IRS4,MID2,MORC4,MORF4L2,MUM1L1,NGFRAP1,NOX1,NRK,NUP62CL,NXF2,NXF2B,NXF3,NXF5,PCDH19,PIH1D3,PLP1,PRPS1,PSMD10,RAB40A,RAB40AL,RAB9B,RBM41,RIPPLY1,RNF128,RPA4,RPL36A,RPL36A-HNRNPH2,SERPINA7,SLC25A53,SRPX2,SYTL4,TAF7L,TBC1D8B,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TEX13A,TEX13B,TIMM8A,TMEM31,TMEM35,TMSB15A,TMSB15B,TNMD,TRMT2B,TSC22D3,TSPAN6,VSIG1,WBP5,XKRX,ZCCHC18,ZMAT1"
TCGA.AA.3679	23	94984303	104557496	2013	0.8663	LARGE-GAIN	NONFOCAL	69	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CSTF2,DIAPH2,DRP2,ESX1,FAM199X,GLA,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,HNRNPH2,IL1RAPL2,MORF4L2,NGFRAP1,NOX1,NXF2,NXF2B,NXF3,NXF5,PCDH19,PLP1,RAB40A,RAB40AL,RAB9B,RPA4,RPL36A,RPL36A-HNRNPH2,SLC25A53,SRPX2,SYTL4,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TEX13A,TIMM8A,TMEM31,TMEM35,TMSB15A,TMSB15B,TNMD,TRMT2B,TSPAN6,WBP5,XKRX,ZCCHC18,ZMAT1"
TCGA.CM.6678	23	96048756	154925044	14607	0.765	LARGE-GAIN	NONFOCAL	382	Too-Many
TCGA.AG.A014.01A	23	96369678	100630092	171	1.0501	LARGE-GAIN	NONFOCAL	17	"ARL13A,BTK,CENPI,CSTF2,DIAPH2,DRP2,NOX1,PCDH19,SRPX2,SYTL4,TAF7L,TIMM8A,TMEM35,TNMD,TRMT2B,TSPAN6,XKRX"
TCGA.5M.AATE	23	96678191	154925044	14312	0.7543	LARGE-GAIN	NONFOCAL	381	Too-Many
TCGA.3L.AA1B	23	97748816	154059411	13925	0.684	LARGE-GAIN	NONFOCAL	364	Too-Many
TCGA.AA.3967.01A	23	99839953	103267205	259	1.0448	LARGE-GAIN	NONFOCAL	59	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CSTF2,DRP2,GLA,GLRA4,GPRASP1,GPRASP2,H2BFWT,HNRNPH2,MORF4L2,NGFRAP1,NOX1,NXF2,NXF2B,NXF3,NXF5,PLP1,RAB40A,RAB40AL,RAB9B,RPL36A,RPL36A-HNRNPH2,SRPX2,SYTL4,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TIMM8A,TMEM31,TMEM35,TMSB15A,TMSB15B,TNMD,TRMT2B,TSPAN6,WBP5,XKRX,ZMAT1"
TCGA.AA.3509.01A	23	99853966	100880212	172	1.2234	LARGE-GAIN	NONFOCAL	23	"ARL13A,ARMCX1,ARMCX3,ARMCX4,ARMCX6,BTK,CENPI,CSTF2,DRP2,GLA,HNRNPH2,NOX1,RPL36A,RPL36A-HNRNPH2,SRPX2,SYTL4,TAF7L,TIMM8A,TMEM35,TNMD,TRMT2B,TSPAN6,XKRX"
TCGA.AA.A00L.01A	23	99891550	102564467	206	1.2518	LARGE-GAIN	NONFOCAL	44	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CSTF2,DRP2,GLA,GPRASP1,GPRASP2,HNRNPH2,NOX1,NXF2,NXF2B,NXF3,NXF5,RAB40AL,RPL36A,RPL36A-HNRNPH2,SRPX2,SYTL4,TAF7L,TCEAL2,TCEAL5,TCEAL6,TCEAL8,TCP11X2,TIMM8A,TMEM35,TMSB15A,TRMT2B,TSPAN6,XKRX,ZMAT1"
TCGA.AA.A00D.01A	23	99940945	100808746	137	0.9163	LARGE-GAIN	NONFOCAL	18	"ARL13A,ARMCX1,ARMCX4,BTK,CENPI,CSTF2,DRP2,GLA,HNRNPH2,NOX1,RPL36A,RPL36A-HNRNPH2,SYTL4,TAF7L,TIMM8A,TMEM35,TRMT2B,XKRX"
TCGA.AD.6965	23	100547595	114306476	2774	1.0429	LARGE-GAIN	NONFOCAL	96	"ACSL4,ALG13,AMMECR1,AMOT,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,ATG4A,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CXorf57,DCX,ESX1,FAM199X,FRMPD3,GLA,GLRA4,GPRASP1,GPRASP2,GUCY2F,H2BFM,H2BFWT,HNRNPH2,HTR2C,IL13RA2,IL1RAPL2,IRS4,KCNE5,LHFPL1,MID2,MORC4,MORF4L2,MUM1L1,NGFRAP1,NRK,NUP62CL,NXF2,NXF2B,NXF3,NXF5,NXT2,PAK3,PIH1D3,PLP1,PRPS1,PSMD10,RAB40A,RAB40AL,RAB9B,RBM41,RGAG1,RIPPLY1,RNF128,RPL36A,RPL36A-HNRNPH2,SERPINA7,SLC25A53,TAF7L,TBC1D8B,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TEX13A,TEX13B,TIMM8A,TMEM164,TMEM31,TMSB15A,TMSB15B,TRPC5,TRPC5OS,TSC22D3,VSIG1,WBP5,ZCCHC16,ZCCHC18,ZMAT1"
TCGA.AG.A014.01A	23	100650411	102331137	54	1.023	LARGE-GAIN	NONFOCAL	26	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX5,BHLHB9,GLA,GPRASP1,GPRASP2,HNRNPH2,NXF2,NXF2B,NXF3,NXF5,RAB40AL,RPL36A,RPL36A-HNRNPH2,TCEAL2,TCEAL6,TCP11X2,TMSB15A,ZMAT1"
TCGA.AA.3509.01A	23	100881108	101769950	33	1.7102	LARGE-GAIN	NONFOCAL	11	"ARMCX2,ARMCX3,BEX5,NXF2,NXF2B,NXF5,TCEAL2,TCEAL6,TCP11X2,TMSB15A,ZMAT1"
TCGA.AA.A00D.01A	23	101623682	102967140	37	0.909	LARGE-GAIN	NONFOCAL	26	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,GLRA4,GPRASP1,GPRASP2,MORF4L2,NGFRAP1,NXF2,NXF2B,NXF3,RAB40A,RAB40AL,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TCP11X2,TMEM31,TMSB15A,WBP5"
TCGA.AA.3509.01A	23	101857051	103499408	78	1.3218	LARGE-GAIN	NONFOCAL	31	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,ESX1,FAM199X,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,MORF4L2,NGFRAP1,NXF3,PLP1,RAB40A,RAB40AL,RAB9B,SLC25A53,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TMEM31,TMSB15B,WBP5,ZCCHC18"
TCGA.AG.A014.01A	23	102508537	107626904	281	0.8891	LARGE-GAIN	NONFOCAL	45	"ATG4A,BEX2,CLDN2,COL4A6,CXorf57,ESX1,FAM199X,FRMPD3,GLRA4,H2BFM,H2BFWT,IL1RAPL2,MID2,MORC4,MORF4L2,MUM1L1,NGFRAP1,NRK,NUP62CL,PIH1D3,PLP1,PRPS1,PSMD10,RAB40A,RAB9B,RBM41,RIPPLY1,RNF128,SERPINA7,SLC25A53,TBC1D8B,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TEX13A,TEX13B,TMEM31,TMSB15B,TSC22D3,VSIG1,WBP5,ZCCHC18"
TCGA.AA.A00L.01A	23	102973937	105855284	51	0.859	LARGE-GAIN	NONFOCAL	16	"CXorf57,ESX1,FAM199X,GLRA4,H2BFM,H2BFWT,IL1RAPL2,MUM1L1,NRK,PLP1,RAB9B,SERPINA7,SLC25A53,TEX13A,TMSB15B,ZCCHC18"
TCGA.AA.A00K.01A	23	103220029	106884105	119	0.9242	LARGE-GAIN	NONFOCAL	23	"CLDN2,CXorf57,ESX1,FAM199X,FRMPD3,H2BFM,H2BFWT,IL1RAPL2,MORC4,MUM1L1,NRK,NUP62CL,PIH1D3,PRPS1,RBM41,RIPPLY1,RNF128,SERPINA7,SLC25A53,TBC1D8B,TEX13A,TMSB15B,ZCCHC18"
TCGA.AA.3509.01A	23	103903535	106465942	127	2.0573	LARGE-GAIN	NONFOCAL	14	"CLDN2,CXorf57,IL1RAPL2,MORC4,MUM1L1,NRK,NUP62CL,PIH1D3,RBM41,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13A"
TCGA.AA.A00N.01A	23	104440120	106184671	96	0.9149	LARGE-GAIN	NONFOCAL	11	"CLDN2,CXorf57,IL1RAPL2,MORC4,MUM1L1,NRK,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13A"
TCGA.D5.6931	23	104472284	111795722	1389	0.9957	LARGE-GAIN	NONFOCAL	39	"ACSL4,ALG13,AMMECR1,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CXorf57,DCX,FRMPD3,GUCY2F,IL1RAPL2,IRS4,KCNE5,MID2,MORC4,MUM1L1,NRK,NUP62CL,NXT2,PAK3,PIH1D3,PRPS1,PSMD10,RBM41,RGAG1,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.AA.3679	23	104790961	154925044	12745	0.8418	LARGE-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3967.01A	23	105277459	107334599	137	0.8557	LARGE-GAIN	NONFOCAL	18	"CLDN2,CXorf57,FRMPD3,MID2,MORC4,MUM1L1,NUP62CL,PIH1D3,PRPS1,PSMD10,RBM41,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13B,TSC22D3,VSIG1"
TCGA.AA.3861.01A	23	106143927	117749532	482	1.0347	LARGE-GAIN	NONFOCAL	46	"ACSL4,AGTR2,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CT83,DCX,DOCK11,FRMPD3,GUCY2F,HTR2C,IL13RA2,IRS4,KCNE5,KLHL13,LHFPL1,LRCH2,LUZP4,MID2,MORC4,NUP62CL,NXT2,PAK3,PIH1D3,PLS3,PRPS1,PSMD10,RBM41,RBMXL3,RGAG1,RIPPLY1,SLC6A14,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,WDR44,ZCCHC16"
TCGA.AA.3862.01A	23	106143927	155246280	2101	0.7055	LARGE-GAIN	NONFOCAL	309	Too-Many
TCGA.CK.4952.01A	23	106402519	107567767	108	0.8968	LARGE-GAIN	NONFOCAL	11	"ATG4A,COL4A6,FRMPD3,MID2,NUP62CL,PIH1D3,PRPS1,PSMD10,TEX13B,TSC22D3,VSIG1"
TCGA.AA.3509.01A	23	106482094	114239713	320	1.6131	LARGE-GAIN	NONFOCAL	31	"ACSL4,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,COL4A5,COL4A6,DCX,FRMPD3,GUCY2F,HTR2C,IL13RA2,IRS4,KCNE5,LHFPL1,MID2,NXT2,PAK3,PIH1D3,PRPS1,PSMD10,RGAG1,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.AA.A00L.01A	23	106871818	114524275	282	1.0223	LARGE-GAIN	NONFOCAL	31	"ACSL4,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,COL4A5,COL4A6,DCX,GUCY2F,HTR2C,IL13RA2,IRS4,KCNE5,LHFPL1,LRCH2,MID2,NXT2,PAK3,PRPS1,PSMD10,RBMXL3,RGAG1,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.AG.3584	23	106909829	154925044	12333	0.8498	LARGE-GAIN	NONFOCAL	299	Too-Many
TCGA.AA.A00K.01A	23	106957759	110463529	209	0.7989	LARGE-GAIN	NONFOCAL	18	"ACSL4,AMMECR1,ATG4A,CHRDL1,COL4A5,COL4A6,GUCY2F,IRS4,KCNE5,MID2,NXT2,PAK3,PSMD10,RGAG1,TEX13B,TMEM164,TSC22D3,VSIG1"
TCGA.AA.3967.01A	23	107553919	114384372	225	0.7464	LARGE-GAIN	NONFOCAL	23	"ACSL4,ALG13,AMMECR1,AMOT,CAPN6,CHRDL1,COL4A5,COL4A6,DCX,GUCY2F,HTR2C,IL13RA2,IRS4,KCNE5,LHFPL1,LRCH2,NXT2,PAK3,RGAG1,TMEM164,TRPC5,TRPC5OS,ZCCHC16"
TCGA.CK.4952.01A	23	107824662	153143524	1743	0.796	LARGE-GAIN	NONFOCAL	241	Too-Many
TCGA.AG.A014.01A	23	107867417	154774710	1723	0.9523	LARGE-GAIN	NONFOCAL	291	Too-Many
TCGA.AA.3973	23	108696980	116177596	1820	0.9369	LARGE-GAIN	NONFOCAL	26	"ACSL4,AGTR2,ALG13,AMMECR1,AMOT,CAPN6,CHRDL1,CT83,DCX,GUCY2F,HTR2C,IL13RA2,KCNE5,LHFPL1,LRCH2,LUZP4,NXT2,PAK3,PLS3,RBMXL3,RGAG1,SLC6A14,TMEM164,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AA.A00D.01A	23	109298538	122561775	380	0.7431	LARGE-GAIN	NONFOCAL	68	"AGTR2,AKAP14,ALG13,AMMECR1,AMOT,ATP1B4,C1GALT1C1,CAPN6,CHRDL1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT83,CUL4B,CXorf56,DCX,DOCK11,GLUD2,GRIA3,HTR2C,IL13RA1,IL13RA2,KIAA1210,KLHL13,LAMP2,LHFPL1,LONRF3,LRCH2,LUZP4,MCTS1,NDUFA1,NKAP,NKRF,PAK3,PGRMC1,PLS3,RBMXL3,RGAG1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SLC6A14,SOWAHD,TMEM164,TMEM255A,TRPC5,TRPC5OS,UBE2A,UPF3B,WDR44,ZBTB33,ZCCHC12,ZCCHC16"
TCGA.AA.A00K.01A	23	110506950	114844512	56	0.693	LARGE-GAIN	NONFOCAL	14	"ALG13,AMOT,CAPN6,DCX,HTR2C,IL13RA2,LHFPL1,LRCH2,LUZP4,PLS3,RBMXL3,TRPC5,TRPC5OS,ZCCHC16"
TCGA.D5.6931	23	111811967	154925044	11419	0.9872	LARGE-GAIN	NONFOCAL	275	Too-Many
TCGA.AA.3841	23	112255700	154925044	11304	1.0681	LARGE-GAIN	NONFOCAL	273	Too-Many
TCGA.AA.3967.01A	23	114404852	144909194	1003	0.9035	LARGE-GAIN	NONFOCAL	155	Too-Many
TCGA.AD.6965	23	114431274	154925044	10707	1.0495	LARGE-GAIN	NONFOCAL	270	Too-Many
TCGA.AA.A00L.01A	23	114536509	123234336	320	1.3574	LARGE-GAIN	NONFOCAL	54	"AGTR2,AKAP14,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT83,CUL4B,CXorf56,DOCK11,GLUD2,GRIA3,IL13RA1,KIAA1210,KLHL13,LAMP2,LONRF3,LUZP4,MCTS1,NDUFA1,NKAP,NKRF,PGRMC1,PLS3,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SLC6A14,SOWAHD,STAG2,THOC2,TMEM255A,UBE2A,UPF3B,WDR44,XIAP,ZBTB33,ZCCHC12"
TCGA.AA.A00K.01A	23	114856521	123505122	318	1.0197	LARGE-GAIN	NONFOCAL	54	"AGTR2,AKAP14,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT83,CUL4B,CXorf56,DOCK11,GLUD2,GRIA3,IL13RA1,KIAA1210,KLHL13,LAMP2,LONRF3,MCTS1,NDUFA1,NKAP,NKRF,PGRMC1,PLS3,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SH2D1A,SLC25A43,SLC25A5,SLC6A14,SOWAHD,STAG2,THOC2,TMEM255A,UBE2A,UPF3B,WDR44,XIAP,ZBTB33,ZCCHC12"
TCGA.AA.3973	23	116544789	151038721	9434	0.9443	LARGE-GAIN	NONFOCAL	174	Too-Many
TCGA.AA.3509.01A	23	117035749	119294190	192	1.2127	LARGE-GAIN	NONFOCAL	24	"AKAP14,CXorf56,DOCK11,IL13RA1,KIAA1210,KLHL13,LONRF3,NDUFA1,NKAP,NKRF,PGRMC1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,UBE2A,UPF3B,WDR44,ZCCHC12"
TCGA.AA.3861.01A	23	117874933	133119294	578	0.9256	LARGE-GAIN	NONFOCAL	81	"ACTRT1,AIFM1,AKAP14,APLN,ARHGAP36,ATP1B4,BCORL1,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,CXorf56,DCAF12L1,DCAF12L2,ELF4,ENOX2,FRMD7,GLUD2,GPC3,GPC4,GPR119,GRIA3,HS6ST2,IGSF1,IL13RA1,KIAA1210,LAMP2,LOC100129520,LONRF3,MBNL3,MCTS1,NDUFA1,NKAP,NKRF,OCRL,OR13H1,PGRMC1,PRR32,RAB33A,RAP2C,RBMX2,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SASH3,SEPT6,SH2D1A,SLC25A14,SLC25A43,SLC25A5,SMARCA1,SOWAHD,STAG2,STK26,TENM1,TFDP3,THOC2,TMEM255A,UBE2A,UPF3B,USP26,UTP14A,XIAP,XPNPEP2,ZBTB33,ZCCHC12,ZDHHC9,ZNF280C"
TCGA.AA.3941	23	118469482	119138049	182	0.8238	LARGE-GAIN	NONFOCAL	13	"AKAP14,CXorf56,NDUFA1,NKAP,NKRF,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,UBE2A,UPF3B"
TCGA.AA.3509.01A	23	119394695	138286159	690	1.4717	LARGE-GAIN	NONFOCAL	99	"ACTRT1,ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,ATP1B4,BCORL1,BRS3,C1GALT1C1,CCDC160,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT55,CUL4B,DCAF12L1,DCAF12L2,DDX26B,ELF4,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FGF13,FHL1,FRMD7,GLUD2,GPC3,GPC4,GPR101,GPR119,GRIA3,HPRT1,HS6ST2,HTATSF1,IGSF1,LAMP2,LOC100129520,MAP7D3,MBNL3,MCTS1,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,PRR32,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SH2D1A,SLC25A14,SLC9A6,SMARCA1,SMIM10,STAG2,STK26,TENM1,TFDP3,THOC2,TMEM255A,USP26,UTP14A,VGLL1,XIAP,XPNPEP2,ZDHHC9,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.AG.3883	23	124901901	146177413	5656	0.7255	LARGE-GAIN	NONFOCAL	98	"ACTRT1,ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,ATP11C,BCORL1,BRS3,CCDC160,CD40LG,CDR1,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,CXorf51A,CXorf51B,CXorf66,DCAF12L1,DCAF12L2,DDX26B,ELF4,ENOX2,F9,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FGF13,FHL1,FRMD7,GPC3,GPC4,GPR101,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MAP7D3,MBNL3,MCF2,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,PRR32,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SLC25A14,SLC9A6,SLITRK2,SLITRK4,SMARCA1,SMIM10,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,STK26,TFDP3,TMEM257,UBE2NL,USP26,UTP14A,VGLL1,XPNPEP2,ZDHHC9,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.AA.A00L.01A	23	125954642	135961428	442	1.2287	LARGE-GAIN	NONFOCAL	67	"ACTRT1,ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,BCORL1,BRS3,CCDC160,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,ELF4,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,FRMD7,GPC3,GPC4,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,MAP7D3,MBNL3,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,PRR32,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SLC25A14,SLC9A6,SMARCA1,SMIM10,STK26,TFDP3,USP26,UTP14A,VGLL1,XPNPEP2,ZDHHC9,ZNF280C,ZNF449,ZNF75D"
TCGA.AA.3941	23	128517319	129596231	260	0.6835	LARGE-GAIN	NONFOCAL	15	"AIFM1,APLN,BCORL1,ELF4,GPR119,OCRL,RAB33A,RBMX2,SASH3,SLC25A14,SMARCA1,UTP14A,XPNPEP2,ZDHHC9,ZNF280C"
TCGA.G4.6294	23	128598790	154925044	6887	0.8694	LARGE-GAIN	NONFOCAL	208	Too-Many
TCGA.AA.3975	23	128796349	154925044	6654	0.8319	LARGE-GAIN	NONFOCAL	205	Too-Many
TCGA.AA.A00K.01A	23	128957615	139047515	437	1.0107	LARGE-GAIN	NONFOCAL	67	"ADGRG4,AIFM1,ARHGAP36,ARHGEF6,ATP11C,BCORL1,BRS3,CCDC160,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,CXorf66,DDX26B,ELF4,ENOX2,F9,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FGF13,FHL1,FRMD7,GPC3,GPC4,GPR101,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,MAP7D3,MBNL3,MCF2,MMGT1,MOSPD1,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SLC25A14,SLC9A6,SMIM10,STK26,TFDP3,USP26,UTP14A,VGLL1,ZDHHC9,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.AG.3575	23	131819569	154925044	6139	0.7803	LARGE-GAIN	NONFOCAL	185	Too-Many
TCGA.AY.6196	23	132322242	154925044	5905	0.6817	LARGE-GAIN	NONFOCAL	183	Too-Many
TCGA.CL.5917	23	132665921	154925044	6077	0.9712	LARGE-GAIN	NONFOCAL	181	Too-Many
TCGA.AA.3861.01A	23	133303364	135049502	99	1.6947	LARGE-GAIN	NONFOCAL	27	"CCDC160,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,HPRT1,MMGT1,MOSPD1,PHF6,PLAC1,SAGE1,SMIM10,ZNF449,ZNF75D"
TCGA.AA.A00D.01A	23	133303364	135579826	145	0.935	LARGE-GAIN	NONFOCAL	33	"ADGRG4,BRS3,CCDC160,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,HPRT1,HTATSF1,MAP7D3,MMGT1,MOSPD1,PHF6,PLAC1,SAGE1,SLC9A6,SMIM10,ZNF449,ZNF75D"
TCGA.5M.AAT4	23	134757481	144572348	2931	0.7305	LARGE-GAIN	NONFOCAL	47	"ADGRG4,ARHGEF6,ATP11C,BRS3,CD40LG,CDR1,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CXorf66,F9,FGF13,FHL1,GPR101,HTATSF1,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MAP7D3,MCF2,MMGT1,RBMX,SAGE1,SLC9A6,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,UBE2NL,VGLL1,ZIC3"
TCGA.AA.3861.01A	23	135053147	145075731	245	0.9847	LARGE-GAIN	NONFOCAL	38	"ADGRG4,ARHGEF6,ATP11C,BRS3,CD40LG,CDR1,CXorf66,F9,FGF13,FHL1,GPR101,HTATSF1,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MAP7D3,MCF2,MMGT1,RBMX,SLC9A6,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL,VGLL1,ZIC3"
TCGA.AA.A00D.01A	23	135618153	146360724	163	0.7889	LARGE-GAIN	NONFOCAL	33	"ARHGEF6,ATP11C,CD40LG,CDR1,CXorf51A,CXorf51B,CXorf66,F9,FGF13,GPR101,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,RBMX,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL,VGLL1,ZIC3"
TCGA.AA.3509.01A	23	138839907	146318385	80	1.4331	LARGE-GAIN	NONFOCAL	24	"ATP11C,CDR1,CXorf51A,CXorf51B,CXorf66,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.AA.A00L.01A	23	139585863	146993625	50	0.8821	LARGE-GAIN	NONFOCAL	22	"CDR1,CXorf51A,CXorf51B,FMR1,LDOC1,MAGEC1,MAGEC2,MAGEC3,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.EI.6511	23	143257329	154925044	3187	0.7095	LARGE-GAIN	NONFOCAL	119	Too-Many
TCGA.5M.AAT4	23	144579740	154925044	2788	0.7457	LARGE-GAIN	NONFOCAL	118	Too-Many
TCGA.A6.5666	23	144879112	154925044	2695	0.9192	LARGE-GAIN	NONFOCAL	118	Too-Many
TCGA.AA.A00K.01A	23	145082529	154528046	503	0.857	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.AG.3883	23	146711648	154925044	1987	0.7705	LARGE-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.A00L.01A	23	147003376	149999647	103	1.2043	LARGE-GAIN	NONFOCAL	17	"AFF2,CD99L2,CXorf40A,CXorf40B,FMR1,FMR1NB,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MTM1,MTMR1,TMEM185A"
TCGA.AA.3967.01A	23	147003376	153001519	283	0.8636	LARGE-GAIN	NONFOCAL	57	"ABCD1,AFF2,ATP2B3,BCAP31,BGN,CD99L2,CETN2,CNGA2,CSAG1,CSAG3,CXorf40A,CXorf40B,DUSP9,FAM58A,FATE1,FMR1,FMR1NB,GABRA3,GABRE,GABRQ,GPR50,HAUS7,HMGB3,HSFX1,HSFX2,IDS,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA11,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MTM1,MTMR1,NSDHL,PASD1,PNCK,PNMA3,PNMA5,PNMA6A,PRRG3,SLC6A8,TMEM185A,TREX2,VMA21,ZFP92,ZNF185,ZNF275"
TCGA.AA.3861.01A	23	147019553	150791362	119	0.8527	LARGE-GAIN	NONFOCAL	21	"AFF2,CD99L2,CXorf40A,CXorf40B,FMR1,FMR1NB,GPR50,HMGB3,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MTM1,MTMR1,PASD1,TMEM185A,VMA21"
TCGA.AA.3509.01A	23	147022039	154132143	654	1.2839	LARGE-GAIN	NONFOCAL	105	Too-Many
TCGA.AA.A00D.01A	23	147582544	153944252	371	0.8504	LARGE-GAIN	NONFOCAL	93	"ABCD1,AFF2,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CD99L2,CETN2,CNGA2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,CXorf40A,CXorf40B,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FATE1,FLNA,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,GPR50,HAUS7,HCFC1,HMGB3,HSFX1,HSFX2,IDH3G,IDS,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA11,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MECP2,MTM1,MTMR1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PASD1,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,PRRG3,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM185A,TMEM187,TREX2,UBL4A,VMA21,ZFP92,ZNF185,ZNF275"
TCGA.AG.3885	23	150415722	151477085	396	0.8674	LARGE-GAIN	NONFOCAL	11	"CNGA2,FATE1,GABRA3,GABRE,MAGEA10,MAGEA10-MAGEA5,MAGEA4,MAGEA5,PASD1,PRRG3,VMA21"
TCGA.EI.6513	23	150672922	154925044	838	0.7042	LARGE-GAIN	NONFOCAL	94	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CETN2,CLIC2,CMC4,CNGA2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FATE1,FLNA,FUNDC2,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MECP2,MPP1,MTCP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PASD1,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,PRRG3,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF185,ZNF275"
TCGA.AA.3861.01A	23	150793860	152014822	73	1.5603	LARGE-GAIN	NONFOCAL	20	"CETN2,CNGA2,CSAG1,CSAG3,FATE1,GABRA3,GABRE,GABRQ,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,NSDHL,PASD1,PRRG3"
TCGA.CM.6169	23	150879382	154925044	742	0.7401	LARGE-GAIN	NONFOCAL	92	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CETN2,CLIC2,CMC4,CNGA2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FATE1,FLNA,FUNDC2,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MECP2,MPP1,MTCP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF185,ZNF275"
TCGA.AA.A00L.01A	23	150884554	152158746	67	1.216	LARGE-GAIN	NONFOCAL	20	"CETN2,CNGA2,CSAG1,CSAG3,FATE1,GABRA3,GABRE,GABRQ,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,NSDHL,PNMA5,ZNF185"
TCGA.AA.3973	23	151042819	154925044	685	1.0327	LARGE-GAIN	NONFOCAL	90	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CETN2,CLIC2,CMC4,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MECP2,MPP1,MTCP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF185,ZNF275"
TCGA.AA.3530	23	151393576	152704085	307	0.8112	LARGE-GAIN	NONFOCAL	18	"CETN2,CSAG1,CSAG3,GABRA3,GABRQ,MAGEA1,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,NSDHL,PNMA3,PNMA5,PNMA6A,ZFP92,ZNF185,ZNF275"
TCGA.AA.3872	23	151415873	152704085	299	1.0595	LARGE-GAIN	NONFOCAL	18	"CETN2,CSAG1,CSAG3,GABRA3,GABRQ,MAGEA1,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,NSDHL,PNMA3,PNMA5,PNMA6A,ZFP92,ZNF185,ZNF275"
TCGA.AG.3885	23	151725003	153908138	413	0.8711	LARGE-GAIN	NONFOCAL	65	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CETN2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GAB3,GABRQ,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,MECP2,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,ZFP92,ZNF185,ZNF275"
TCGA.AA.3941	23	151809541	154504904	480	0.706	LARGE-GAIN	NONFOCAL	81	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CETN2,CMC4,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GABRQ,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,MECP2,MPP1,MTCP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,VBP1,ZFP92,ZNF185,ZNF275"
TCGA.AA.3861.01A	23	152018758	155245049	424	0.8244	LARGE-GAIN	NONFOCAL	77	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IL9R,IRAK1,L1CAM,LAGE3,MAGEA1,MECP2,MPP1,MTCP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VAMP7,VBP1,ZFP92,ZNF185,ZNF275"
TCGA.AG.3605.01A	23	152135645	153533604	22	1.7384	LARGE-GAIN	NONFOCAL	36	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,DUSP9,FAM58A,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MAGEA1,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,SLC6A8,SRPK3,SSR4,TEX28,TKTL1,TMEM187,TREX2,ZFP92,ZNF185,ZNF275"
TCGA.AG.4008	23	152222115	154925044	350	1.0559	LARGE-GAIN	NONFOCAL	72	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF275"
TCGA.AA.A00L.01A	23	152225364	153295786	141	0.8365	LARGE-GAIN	NONFOCAL	29	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,DUSP9,FAM58A,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MAGEA1,MECP2,NAA10,PDZD4,PLXNB3,PNCK,PNMA3,PNMA6A,RENBP,SLC6A8,SRPK3,SSR4,TMEM187,TREX2,ZFP92,ZNF275"
TCGA.AA.A00Z.01A	23	152612265	153908362	18	1.8276	LARGE-GAIN	NONFOCAL	50	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CTAG1A,CTAG1B,CTAG2,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GAB3,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,ZFP92,ZNF275"
TCGA.AA.3844	23	152625527	153626737	147	0.7988	LARGE-GAIN	NONFOCAL	33	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,DUSP9,EMD,FAM58A,FLNA,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,PNCK,RENBP,RPL10,SLC6A8,SRPK3,SSR4,TEX28,TKTL1,TMEM187,TREX2,ZFP92"
TCGA.AA.3872	23	152705316	153580675	130	1.2926	LARGE-GAIN	NONFOCAL	30	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,DUSP9,FAM58A,FLNA,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,PNCK,RENBP,SLC6A8,SRPK3,SSR4,TEX28,TKTL1,TMEM187,TREX2"
TCGA.AA.3530	23	152730075	153580675	123	1.0539	LARGE-GAIN	NONFOCAL	29	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,DUSP9,FAM58A,FLNA,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,PNCK,RENBP,SLC6A8,SRPK3,SSR4,TEX28,TKTL1,TMEM187"
TCGA.AA.3967.01A	23	153048196	154774710	327	1.0678	LARGE-GAIN	NONFOCAL	55	"ARHGAP4,ATP6AP1,AVPR2,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,RAB39B,RENBP,RPL10,SLC10A3,SMIM9,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,UBL4A,VBP1"
TCGA.CK.4952.01A	23	153177355	154427904	242	0.7459	LARGE-GAIN	NONFOCAL	46	"ARHGAP4,ATP6AP1,BRCC3,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HCFC1,IKBKG,IRAK1,LAGE3,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PLXNA3,RENBP,RPL10,SLC10A3,SMIM9,TAZ,TEX28,TKTL1,TMEM187,UBL4A,VBP1"
TCGA.AA.3530	23	153582702	153713166	10	1.8418	LARGE-GAIN	NONFOCAL	11	"ATP6AP1,DNASE1L1,EMD,FAM50A,FLNA,GDI1,LAGE3,PLXNA3,RPL10,TAZ,UBL4A"
TCGA.AA.3872	23	153582702	153713166	10	2.002	LARGE-GAIN	NONFOCAL	11	"ATP6AP1,DNASE1L1,EMD,FAM50A,FLNA,GDI1,LAGE3,PLXNA3,RPL10,TAZ,UBL4A"
TCGA.AA.A00L.01A	23	153607785	153736813	53	0.7088	LARGE-GAIN	NONFOCAL	12	"ATP6AP1,DNASE1L1,EMD,FAM3A,FAM50A,GDI1,LAGE3,PLXNA3,RPL10,SLC10A3,TAZ,UBL4A"
TCGA.AA.3530	23	153713786	154925044	123	0.7095	LARGE-GAIN	NONFOCAL	28	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,MPP1,MTCP1,RAB39B,SLC10A3,SMIM9,SPRY3,TMLHE,UBL4A,VBP1"
TCGA.AA.3872	23	153713786	154925044	123	0.9673	LARGE-GAIN	NONFOCAL	28	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,MPP1,MTCP1,RAB39B,SLC10A3,SMIM9,SPRY3,TMLHE,UBL4A,VBP1"
TCGA.AA.A00L.01A	23	153740102	154774710	105	1.1655	LARGE-GAIN	NONFOCAL	25	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,MPP1,MTCP1,RAB39B,SMIM9,TMLHE,VBP1"
TCGA.DC.6155	23	153887203	154925044	112	0.6881	LARGE-GAIN	NONFOCAL	20	"BRCC3,CLIC2,CMC4,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,GAB3,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VBP1"
TCGA.AA.A00Q.01A	23	153908362	154774710	93	0.7241	LARGE-GAIN	NONFOCAL	19	"BRCC3,CLIC2,CMC4,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,GAB3,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,RAB39B,SMIM9,TMLHE,VBP1"
TCGA.AA.A00D.01A	23	154013289	154528046	55	1.148	LARGE-GAIN	NONFOCAL	16	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,RAB39B,SMIM9,VBP1"
TCGA.AA.3509.01A	23	154227707	155130128	50	1.4548	LARGE-GAIN	NONFOCAL	17	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,MTCP1,RAB39B,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.AA.A01F.01A	24	2654981	16834945	134	0.8852	LARGE-GAIN	NONFOCAL	20	"AMELY,DDX3Y,NLGN4Y,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,ZFY"
TCGA.AA.A01C.01A	24	2654981	22942770	160	0.9498	LARGE-GAIN	NONFOCAL	30	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.3862.01A	24	5449728	25375680	169	0.783	LARGE-GAIN	NONFOCAL	42	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.A00Q.01A	24	7171926	16952303	3	1.0915	LARGE-GAIN	NONFOCAL	12	"DDX3Y,NLGN4Y,TMSB4Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B"
TCGA.AG.A02X.01A	24	14518553	22942770	128	1.6232	LARGE-GAIN	NONFOCAL	17	"CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,RPS4Y2,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.3666	1	949607	990516	3	-4.6667	LARGE-LOSS	FOCAL	2	"AGRN,ISG15"
TCGA.AA.A010.01A	1	1131929	1244516	53	-1.8289	LARGE-LOSS	FOCAL	10	"ACAP3,B3GALT6,FAM132A,PUSL1,SCNN1D,SDF4,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.AG.3909.01A	1	1190535	1203205	5	-1.3912	LARGE-LOSS	FOCAL	1	UBE2J2
TCGA.AA.A00N.01A	1	1191379	1201431	4	-1.7832	LARGE-LOSS	FOCAL	1	UBE2J2
TCGA.AA.A010.01A	1	1244815	1255792	13	-2.5837	LARGE-LOSS	FOCAL	2	"CPSF3L,PUSL1"
TCGA.D5.5537	1	1268846	1297421	3	-1.6011	LARGE-LOSS	FOCAL	3	"DVL1,MXRA8,TAS1R3"
TCGA.AG.3909.01A	1	1323133	1342292	11	-1.4412	LARGE-LOSS	FOCAL	2	"CCNL2,MRPL20"
TCGA.AA.A00N.01A	1	1325571	1341130	11	-1.8891	LARGE-LOSS	FOCAL	2	"CCNL2,MRPL20"
TCGA.CK.5914.01A	1	1325571	1341130	11	-1.9672	LARGE-LOSS	FOCAL	2	"CCNL2,MRPL20"
TCGA.AA.A010.01A	1	1459170	1499907	15	-1.8643	LARGE-LOSS	FOCAL	3	"ATAD3A,SSU72,TMEM240"
TCGA.AA.A00N.01A	1	1639564	1656760	7	-2.1005	LARGE-LOSS	FOCAL	3	"CDK11A,CDK11B,SLC35E2"
TCGA.AA.A010.01A	1	1696656	1724621	5	-2.0239	LARGE-LOSS	FOCAL	2	"GNB1,NADK"
TCGA.AA.A010.01A	1	1956332	2005626	11	-1.9631	LARGE-LOSS	FOCAL	2	"GABRD,PRKCZ"
TCGA.AA.A010.01A	1	2105305	2237439	17	-1.6506	LARGE-LOSS	FOCAL	3	"C1orf86,PRKCZ,SKI"
TCGA.AA.A01Q.01A	1	2317200	2321322	4	-1.6241	LARGE-LOSS	FOCAL	1	MORN1
TCGA.AG.3909.01A	1	2321322	2332247	5	-1.9312	LARGE-LOSS	FOCAL	2	"MORN1,RER1"
TCGA.AA.A00N.01A	1	2327172	2332247	4	-2.1801	LARGE-LOSS	FOCAL	1	RER1
TCGA.AA.A010.01A	1	2441236	2461277	19	-2.1988	LARGE-LOSS	FOCAL	2	"HES5,PANK4"
TCGA.AA.A010.01A	1	3542240	3563955	13	-2.7889	LARGE-LOSS	FOCAL	2	"TPRG1L,WRAP73"
TCGA.AA.A01D.01A	1	3686295	3743194	9	-3.6185	LARGE-LOSS	FOCAL	4	"CCDC27,CEP104,LRRC47,SMIM1"
TCGA.AA.A010.01A	1	3750384	3788986	18	-1.7475	LARGE-LOSS	FOCAL	2	"CEP104,DFFB"
TCGA.AA.3872	1	4095094	4097287	3	-1.784	LARGE-LOSS	FOCAL	0	None
TCGA.A6.4107	1	4345497	4351887	3	-7.1217	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3860	1	4422004	4423895	3	-4.1224	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A026	1	4422004	4423895	3	-5.8475	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	1	5246625	5247354	3	-1.5454	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	6211043	6257660	10	-1.5887	LARGE-LOSS	FOCAL	2	"CHD5,RPL22"
TCGA.AA.A010.01A	1	6272681	6354877	19	-1.8905	LARGE-LOSS	FOCAL	5	"ACOT7,GPR153,HES3,ICMT,RNF207"
TCGA.AA.A010.01A	1	6488239	6586734	36	-1.5227	LARGE-LOSS	FOCAL	4	"ESPN,NOL9,PLEKHG5,TNFRSF25"
TCGA.EI.6511	1	6960926	7196878	88	-1.7401	LARGE-LOSS	FOCAL	1	CAMTA1
TCGA.AG.3909.01A	1	7826434	7853941	9	-1.7703	LARGE-LOSS	FOCAL	3	"CAMTA1,PER3,VAMP3"
TCGA.AA.A010.01A	1	7833440	7863704	13	-2.0313	LARGE-LOSS	FOCAL	2	"PER3,VAMP3"
TCGA.AA.A010.01A	1	8482729	8601225	7	-1.5072	LARGE-LOSS	FOCAL	1	RERE
TCGA.AG.3599	1	8698609	8705036	4	-6.3347	LARGE-LOSS	FOCAL	1	RERE
TCGA.AA.A010.01A	1	9078230	9118172	13	-1.4195	LARGE-LOSS	FOCAL	2	"SLC2A5,SLC2A7"
TCGA.AA.A010.01A	1	9613656	9658487	9	-2.0355	LARGE-LOSS	FOCAL	2	"SLC25A33,TMEM201"
TCGA.AA.A010.01A	1	10678332	10753838	24	-1.851	LARGE-LOSS	FOCAL	2	"CASZ1,PEX14"
TCGA.AA.A010.01A	1	11114834	11129567	9	-2.3323	LARGE-LOSS	FOCAL	2	"EXOSC10,SRM"
TCGA.AA.A010.01A	1	11130892	11134238	4	-1.9949	LARGE-LOSS	FOCAL	1	EXOSC10
TCGA.AA.A010.01A	1	11136897	11151503	12	-1.3296	LARGE-LOSS	FOCAL	1	EXOSC10
TCGA.AA.A010.01A	1	11708704	11740373	19	-1.5716	LARGE-LOSS	FOCAL	4	"FBXO2,FBXO44,FBXO6,MAD2L2"
TCGA.G5.6572	1	12113239	12119568	3	-7.4067	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4614	1	12835867	12911095	6	-1.3614	LARGE-LOSS	FOCAL	6	"HNRNPCL1,HNRNPCL3,HNRNPCL4,PRAMEF1,PRAMEF11,PRAMEF12"
TCGA.CM.6163	1	12852747	12882558	3	-5.3422	LARGE-LOSS	FOCAL	1	PRAMEF1
TCGA.AY.5543	1	12857862	12882558	3	-1.507	LARGE-LOSS	FOCAL	0	None
TCGA.AF.6655	1	12882558	12911095	3	-3.5266	LARGE-LOSS	FOCAL	4	"HNRNPCL1,HNRNPCL3,HNRNPCL4,PRAMEF11"
TCGA.AG.A008.01A	1	13716889	13742860	4	-1.9522	LARGE-LOSS	FOCAL	2	"PRAMEF17,PRAMEF20"
TCGA.AA.A010.01A	1	14042004	14099561	6	-1.7747	LARGE-LOSS	FOCAL	1	PRDM2
TCGA.A6.2682	1	14278990	14280561	3	-2.7459	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	1	15627673	15684567	16	-2.3002	LARGE-LOSS	FOCAL	1	FHAD1
TCGA.G4.6322	1	16368132	16530849	26	-6.7617	LARGE-LOSS	FOCAL	4	"ARHGEF19,CLCNKB,EPHA2,FAM131C"
TCGA.G4.6322	1	16534645	16575029	6	-3.445	LARGE-LOSS	FOCAL	3	"ARHGEF19,FBXO42,RSG1"
TCGA.A6.3808.01A	1	17250798	17295559	26	-2.0113	LARGE-LOSS	FOCAL	1	CROCC
TCGA.AA.A01I.01A	1	17316144	17318182	2	-6.435	LARGE-LOSS	FOCAL	1	ATP13A2
TCGA.AA.A010.01A	1	17330766	17371209	11	-1.4718	LARGE-LOSS	FOCAL	2	"ATP13A2,SDHB"
TCGA.AG.A01L.01A	1	17714859	17715225	2	-2.881	LARGE-LOSS	FOCAL	1	PADI6
TCGA.AA.A01I.01A	1	18960780	18961558	2	-5.1165	LARGE-LOSS	FOCAL	1	PAX7
TCGA.CM.6677	1	19113057	19119909	4	-3.5128	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01N.01A	1	19491242	19492100	3	-4.4857	LARGE-LOSS	FOCAL	1	UBR4
TCGA.CK.5914.01A	1	19665978	19670794	3	-1.9808	LARGE-LOSS	FOCAL	1	CAPZB
TCGA.AA.A010.01A	1	19948521	20005011	9	-2.0864	LARGE-LOSS	FOCAL	4	"HTR6,MINOS1,MINOS1-NBL1,NBL1"
TCGA.AA.A010.01A	1	20810081	20829679	5	-2.2081	LARGE-LOSS	FOCAL	2	"CAMK2N1,MUL1"
TCGA.AG.3901	1	20945685	20952270	3	-4.3622	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	21094026	21137204	9	-2.777	LARGE-LOSS	FOCAL	2	"EIF4G3,HP1BP3"
TCGA.AA.A00N.01A	1	21099912	21155593	12	-1.7214	LARGE-LOSS	FOCAL	2	"EIF4G3,HP1BP3"
TCGA.AA.A010.01A	1	21139591	21155593	5	-2.3027	LARGE-LOSS	FOCAL	1	EIF4G3
TCGA.AA.A010.01A	1	21771530	21809672	13	-1.5172	LARGE-LOSS	FOCAL	1	NBPF3
TCGA.AA.3861.01A	1	21924841	21934664	6	-2.6291	LARGE-LOSS	FOCAL	1	RAP1GAP
TCGA.AA.A010.01A	1	21930270	21937918	7	-1.6204	LARGE-LOSS	FOCAL	1	RAP1GAP
TCGA.AA.A010.01A	1	21938524	21976205	10	-2.6682	LARGE-LOSS	FOCAL	1	RAP1GAP
TCGA.AA.A010.01A	1	21977908	22016418	5	-1.3729	LARGE-LOSS	FOCAL	2	"RAP1GAP,USP48"
TCGA.AD.6890	1	22320514	22328517	4	-5.8364	LARGE-LOSS	FOCAL	1	CELA3A
TCGA.AZ.4684.01A	1	22324572	22338850	9	-2.5599	LARGE-LOSS	FOCAL	1	CELA3A
TCGA.AF.A56L	1	22324704	22328517	3	-4.0445	LARGE-LOSS	FOCAL	1	CELA3A
TCGA.AZ.6606	1	22324704	22328517	3	-1.9834	LARGE-LOSS	FOCAL	1	CELA3A
TCGA.5M.AAT5	1	22503775	22509205	7	-7.109	LARGE-LOSS	FOCAL	0	None
TCGA.CM.4747	1	22535810	22536898	3	-6.7627	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3858	1	22758582	22761944	3	-2.9109	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	1	23659964	23707877	10	-1.5546	LARGE-LOSS	FOCAL	3	"HNRNPR,TCEA3,ZNF436"
TCGA.CK.5914.01A	1	24019050	24191929	44	-1.3377	LARGE-LOSS	FOCAL	7	"FUCA1,GALE,HMGCL,LYPLA2,PITHD1,RPL11,TCEB3"
TCGA.AG.3909.01A	1	24105849	24298293	35	-1.3959	LARGE-LOSS	FOCAL	8	"CNR2,FUCA1,GALE,HMGCL,LYPLA2,PITHD1,PNRC2,SRSF10"
TCGA.G4.6322	1	25358210	25366623	6	-2.9283	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	25737784	25784885	8	-1.9007	LARGE-LOSS	FOCAL	2	"RHCE,TMEM57"
TCGA.AA.A010.01A	1	26098097	26163857	23	-1.5507	LARGE-LOSS	FOCAL	4	"AUNIP,MAN1C1,MTFR1L,SEPN1"
TCGA.CK.5914.01A	1	26212165	26231060	5	-1.7653	LARGE-LOSS	FOCAL	1	STMN1
TCGA.AA.A00N.01A	1	26227438	26231060	4	-2.4201	LARGE-LOSS	FOCAL	1	STMN1
TCGA.AG.A01W.01A	1	26517023	26527766	6	-1.3889	LARGE-LOSS	FOCAL	1	CATSPER4
TCGA.AA.A004.01A	1	26524130	26524725	2	-7.668	LARGE-LOSS	FOCAL	1	CATSPER4
TCGA.AA.A01D.01A	1	26524130	26524725	2	-6.9825	LARGE-LOSS	FOCAL	1	CATSPER4
TCGA.AA.A01K.01A	1	26524130	26524725	2	-6.2855	LARGE-LOSS	FOCAL	1	CATSPER4
TCGA.CK.5914.01A	1	26799910	26801520	4	-2.0301	LARGE-LOSS	FOCAL	1	HMGN2
TCGA.AA.A00N.01A	1	26799910	26863351	5	-1.9052	LARGE-LOSS	FOCAL	2	"HMGN2,RPS6KA1"
TCGA.DY.A0XA	1	27520864	27703044	26	-2.6003	LARGE-LOSS	FOCAL	5	"FCN3,MAP3K6,SYTL1,TMEM222,WDTC1"
TCGA.AA.3952	1	27643516	27660730	3	-6.1779	LARGE-LOSS	FOCAL	1	TMEM222
TCGA.AA.A010.01A	1	27657162	27677707	15	-1.5519	LARGE-LOSS	FOCAL	2	"SYTL1,TMEM222"
TCGA.AA.A010.01A	1	27679722	27708599	33	-2.2542	LARGE-LOSS	FOCAL	4	"CD164L2,FCN3,MAP3K6,SYTL1"
TCGA.CK.5914.01A	1	27685857	27697032	12	-1.4132	LARGE-LOSS	FOCAL	2	"FCN3,MAP3K6"
TCGA.AA.A010.01A	1	27939384	27950221	9	-1.3964	LARGE-LOSS	FOCAL	1	FGR
TCGA.AA.A017.01A	1	28861513	28862727	3	-5.2246	LARGE-LOSS	FOCAL	1	RCC1
TCGA.CK.5914.01A	1	28880105	28921100	14	-1.514	LARGE-LOSS	FOCAL	2	"RAB42,TRNAU1AP"
TCGA.AA.A010.01A	1	29424271	29486845	10	-1.5362	LARGE-LOSS	FOCAL	3	"EPB41,SRSF4,TMEM200B"
TCGA.AA.3972	1	30738431	30739795	3	-6.3072	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	1	30901512	30904196	3	-4.3613	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A017.01A	1	32502473	32505059	4	-2.9546	LARGE-LOSS	FOCAL	1	KHDRBS1
TCGA.AA.A010.01A	1	33299576	33354503	9	-2.6838	LARGE-LOSS	FOCAL	3	"FNDC5,HPCA,S100PBP"
TCGA.AF.3914.01A	1	33354503	33360888	4	-1.6908	LARGE-LOSS	FOCAL	2	"HPCA,TMEM54"
TCGA.AA.A010.01A	1	33359093	33429605	15	-1.6061	LARGE-LOSS	FOCAL	3	"HPCA,RNF19B,TMEM54"
TCGA.AA.A010.01A	1	33736103	33832696	21	-1.608	LARGE-LOSS	FOCAL	3	"A3GALT2,PHC2,ZNF362"
TCGA.AA.A010.01A	1	35447517	35476342	11	-1.7492	LARGE-LOSS	FOCAL	2	"ZMYM6,ZMYM6NB"
TCGA.AG.A01W.01A	1	35826490	35828796	3	-1.561	LARGE-LOSS	FOCAL	1	ZMYM4
TCGA.AA.A010.01A	1	36019919	36059975	16	-1.596	LARGE-LOSS	FOCAL	3	"KIAA0319L,NCDN,TFAP2E"
TCGA.AA.A00N.01A	1	36226446	36230792	7	-1.6347	LARGE-LOSS	FOCAL	1	CLSPN
TCGA.AA.A010.01A	1	36282446	36301395	10	-1.8486	LARGE-LOSS	FOCAL	1	AGO4
TCGA.AA.A010.01A	1	36602756	36645758	18	-2.4598	LARGE-LOSS	FOCAL	2	"MAP7D1,TRAPPC3"
TCGA.A6.A56B	1	36872664	36873317	4	-2.039	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01F.01A	1	36921362	36921760	2	-1.8674	LARGE-LOSS	FOCAL	1	MRPS15
TCGA.AA.A02E.01A	1	36929342	36933146	6	-4.2207	LARGE-LOSS	FOCAL	2	"CSF3R,MRPS15"
TCGA.AG.3909.01A	1	37974802	38018196	5	-1.9846	LARGE-LOSS	FOCAL	2	"MEAF6,SNIP1"
TCGA.AA.A010.01A	1	38219860	38259828	5	-1.5173	LARGE-LOSS	FOCAL	2	"EPHA10,MANEAL"
TCGA.AA.A010.01A	1	38261358	38289344	11	-2.8701	LARGE-LOSS	FOCAL	4	"C1orf122,MANEAL,MTF1,YRDC"
TCGA.AA.A010.01A	1	38297854	38304286	4	-1.4195	LARGE-LOSS	FOCAL	1	MTF1
TCGA.AA.A00N.01A	1	38442494	39353567	34	-1.4279	LARGE-LOSS	FOCAL	8	"FHL3,GJA9,MYCBP,POU3F1,RHBDL2,RRAGC,SF3A3,UTP11L"
TCGA.AA.A02F.01A	1	38444345	38446226	3	-5.3902	LARGE-LOSS	FOCAL	1	SF3A3
TCGA.AA.A02E.01A	1	38449787	38450318	2	-4.9109	LARGE-LOSS	FOCAL	1	SF3A3
TCGA.AA.A010.01A	1	38481975	38511095	7	-2.0772	LARGE-LOSS	FOCAL	2	"POU3F1,UTP11L"
TCGA.AA.A01C.01A	1	38488321	38489172	2	-4.8061	LARGE-LOSS	FOCAL	1	UTP11L
TCGA.AA.3872	1	38624502	38625374	3	-1.6971	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	38624502	38625374	3	-1.7507	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	39317240	39340196	8	-1.6857	LARGE-LOSS	FOCAL	3	"GJA9,MYCBP,RRAGC"
TCGA.AA.A01C.01A	1	39463836	39469626	4	-1.7761	LARGE-LOSS	FOCAL	1	AKIRIN1
TCGA.AA.A010.01A	1	39925396	40124813	37	-1.3245	LARGE-LOSS	FOCAL	5	"BMP8A,HEYL,MACF1,NT5C1A,PABPC4"
TCGA.AA.A00N.01A	1	40033372	40098267	11	-1.3581	LARGE-LOSS	FOCAL	2	"HEYL,PABPC4"
TCGA.AG.3909.01A	1	40919816	40961004	11	-1.421	LARGE-LOSS	FOCAL	2	"ZFP69,ZFP69B"
TCGA.5M.AAT4	1	41022075	41028209	3	-8.4418	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	41213145	41237009	12	-1.521	LARGE-LOSS	FOCAL	1	NFYC
TCGA.AA.A010.01A	1	41448936	41463016	8	-2.2529	LARGE-LOSS	FOCAL	1	CTPS1
TCGA.AA.A01C.01A	1	41456817	41475775	12	-1.5414	LARGE-LOSS	FOCAL	1	CTPS1
TCGA.AA.A010.01A	1	43130484	43166400	10	-2.0916	LARGE-LOSS	FOCAL	2	"PPIH,YBX1"
TCGA.A6.3808.01A	1	43161843	43213345	10	-2.1875	LARGE-LOSS	FOCAL	3	"CLDN19,P3H1,YBX1"
TCGA.AA.A00N.01A	1	43213345	43282055	25	-1.4494	LARGE-LOSS	FOCAL	4	"C1orf50,CCDC23,LOC100129924,P3H1"
TCGA.AG.A023.01A	1	43223405	43224821	3	-3.6005	LARGE-LOSS	FOCAL	1	P3H1
TCGA.AA.A010.01A	1	43818141	43851612	13	-2.2362	LARGE-LOSS	FOCAL	4	"CDC20,ELOVL1,MED8,MPL"
TCGA.A6.3808.01A	1	43824858	43830820	8	-2.3078	LARGE-LOSS	FOCAL	2	"CDC20,ELOVL1"
TCGA.AA.A00N.01A	1	43827825	43868797	15	-1.4874	LARGE-LOSS	FOCAL	4	"CDC20,ELOVL1,MED8,SZT2"
TCGA.AF.3914.01A	1	43829988	43831206	3	-1.9435	LARGE-LOSS	FOCAL	1	ELOVL1
TCGA.AA.A010.01A	1	44386044	44455928	33	-2.4206	LARGE-LOSS	FOCAL	6	"ARTN,ATP6V0B,B4GALT2,DPH2,IPO13,ST3GAL3"
TCGA.CK.5914.01A	1	44441420	44443565	4	-1.3459	LARGE-LOSS	FOCAL	1	ATP6V0B
TCGA.AA.A010.01A	1	44457519	44468483	9	-1.3743	LARGE-LOSS	FOCAL	2	"CCDC24,SLC6A9"
TCGA.AA.A00N.01A	1	45340272	45347263	4	-1.9544	LARGE-LOSS	FOCAL	1	EIF2B3
TCGA.AA.A010.01A	1	46179890	46295064	10	-1.3404	LARGE-LOSS	FOCAL	2	"IPP,MAST2"
TCGA.AA.A00N.01A	1	46182516	46211821	6	-2.162	LARGE-LOSS	FOCAL	1	IPP
TCGA.CK.5914.01A	1	46184828	46269711	6	-1.4502	LARGE-LOSS	FOCAL	2	"IPP,MAST2"
TCGA.AF.3914.01A	1	46193256	46211821	4	-1.5648	LARGE-LOSS	FOCAL	1	IPP
TCGA.AA.A010.01A	1	46646709	46650224	3	-1.6623	LARGE-LOSS	FOCAL	1	TSPAN1
TCGA.AA.A010.01A	1	46654354	46663337	15	-2.3471	LARGE-LOSS	FOCAL	1	POMGNT1
TCGA.AA.A010.01A	1	46669048	46733083	10	-1.4148	LARGE-LOSS	FOCAL	3	"LURAP1,POMGNT1,RAD54L"
TCGA.AA.A010.01A	1	47144116	47173571	9	-1.4233	LARGE-LOSS	FOCAL	1	EFCAB14
TCGA.AA.A010.01A	1	48821325	48917159	10	-1.7116	LARGE-LOSS	FOCAL	1	SPATA6
TCGA.AA.3488	1	49390335	49774891	67	-1.4635	LARGE-LOSS	FOCAL	1	AGBL4
TCGA.G4.6586	1	49765437	49838006	14	-1.7075	LARGE-LOSS	FOCAL	1	AGBL4
TCGA.A6.6653	1	49817382	49882540	8	-1.373	LARGE-LOSS	FOCAL	1	AGBL4
TCGA.A6.4105	1	49958960	50360065	25	-1.5682	LARGE-LOSS	FOCAL	1	AGBL4
TCGA.SS.A7HO	1	50161290	50391139	17	-1.804	LARGE-LOSS	FOCAL	1	AGBL4
TCGA.AA.A010.01A	1	51425385	51439558	3	-2.6622	LARGE-LOSS	FOCAL	2	"CDKN2C,FAF1"
TCGA.AF.3914.01A	1	51425385	51439558	3	-1.4332	LARGE-LOSS	FOCAL	2	"CDKN2C,FAF1"
TCGA.AA.A010.01A	1	51770689	51860010	15	-1.5666	LARGE-LOSS	FOCAL	2	"EPS15,TTC39A"
TCGA.AA.A00N.01A	1	52486548	52530450	13	-1.3633	LARGE-LOSS	FOCAL	3	"BTF3L4,KTI12,TXNDC12"
TCGA.AA.A010.01A	1	53068034	53108507	5	-1.4091	LARGE-LOSS	FOCAL	2	"FAM159A,GPX7"
TCGA.AA.A00N.01A	1	53666344	53701188	15	-1.5429	LARGE-LOSS	FOCAL	3	"C1orf123,CPT2,MAGOH"
TCGA.AG.3909.01A	1	53666344	53701188	15	-1.6712	LARGE-LOSS	FOCAL	3	"C1orf123,CPT2,MAGOH"
TCGA.AA.A010.01A	1	53712611	53932205	22	-2.0775	LARGE-LOSS	FOCAL	2	"DMRTB1,LRP8"
TCGA.AA.A010.01A	1	54867479	54871577	4	-2.7231	LARGE-LOSS	FOCAL	1	SSBP3
TCGA.AA.A00N.01A	1	55182244	55193973	5	-1.8881	LARGE-LOSS	FOCAL	1	TTC4
TCGA.AG.3885	1	55513168	55514530	3	-3.9086	LARGE-LOSS	FOCAL	1	PCSK9
TCGA.AG.A025.01A	1	55517901	55518285	2	-5.2413	LARGE-LOSS	FOCAL	1	PCSK9
TCGA.AG.A01N.01A	1	55517901	55522982	3	-2.9416	LARGE-LOSS	FOCAL	1	PCSK9
TCGA.AA.3850	1	55935339	55939604	3	-1.34795	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	1	60324043	60333890	8	-1.3569	LARGE-LOSS	FOCAL	1	HOOK1
TCGA.AA.3864	1	60610756	60613342	3	-1.4801	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	1	60610756	60613342	3	-2.3696	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	61543203	61553804	4	-1.3872	LARGE-LOSS	FOCAL	1	NFIA
TCGA.AA.A010.01A	1	61543203	61553804	4	-2.7441	LARGE-LOSS	FOCAL	1	NFIA
TCGA.AA.3864	1	61570824	61585672	3	-1.5601	LARGE-LOSS	FOCAL	1	NFIA
TCGA.DM.A28H	1	62379650	62607785	79	-2.1554	LARGE-LOSS	FOCAL	1	INADL
TCGA.AA.A00N.01A	1	62905492	62915895	9	-1.6987	LARGE-LOSS	FOCAL	1	USP1
TCGA.AA.3667	1	63471491	63472102	3	-1.4307	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2685	1	64359323	64361596	3	-4.803	LARGE-LOSS	FOCAL	1	ROR1
TCGA.AA.A00N.01A	1	64669677	64686465	6	-1.3964	LARGE-LOSS	FOCAL	1	UBE2U
TCGA.D5.5540	1	65043597	65420189	136	-3.9105	LARGE-LOSS	FOCAL	3	"CACHD1,JAK1,RAVER2"
TCGA.DM.A28H	1	65299087	65307408	12	-2.07	LARGE-LOSS	FOCAL	1	JAK1
TCGA.AA.3982	1	66506700	66509113	6	-3.0325	LARGE-LOSS	FOCAL	1	PDE4B
TCGA.AA.3844	1	66959543	66969083	8	-1.9837	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	1	67029557	67037785	10	-1.4573	LARGE-LOSS	FOCAL	1	SGIP1
TCGA.AA.3844	1	67029709	67037785	9	-2.0744	LARGE-LOSS	FOCAL	1	SGIP1
TCGA.AA.3982	1	67029709	67037897	10	-3.1157	LARGE-LOSS	FOCAL	1	SGIP1
TCGA.AA.3867	1	67034991	67037785	3	-4.5936	LARGE-LOSS	FOCAL	1	SGIP1
TCGA.AA.3870	1	67034991	67037785	3	-4.2154	LARGE-LOSS	FOCAL	1	SGIP1
TCGA.AA.A00N.01A	1	67507864	67518446	6	-1.7014	LARGE-LOSS	FOCAL	1	SLC35D1
TCGA.AG.3909.01A	1	67512920	67518446	5	-1.5937	LARGE-LOSS	FOCAL	1	SLC35D1
TCGA.AA.3982	1	68530405	68549594	6	-1.9485	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	68943418	68960084	10	-1.6641	LARGE-LOSS	FOCAL	1	DEPDC1
TCGA.AA.3844	1	69047141	69068060	12	-1.5984	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A28H	1	69082069	69085164	3	-4.49	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	1	69889879	69890826	3	-7.2937	LARGE-LOSS	FOCAL	0	None
TCGA.D5.5540	1	71095173	71126821	18	-4.1163	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	1	72018364	72022229	4	-8.6214	LARGE-LOSS	FOCAL	1	NEGR1
TCGA.AA.3867	1	73012776	73014641	3	-7.1837	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	73012776	73014641	3	-9.8316	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	74123575	74126787	3	-7.2175	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DG	1	74300004	76210523	504	-1.3694	LARGE-LOSS	FOCAL	10	"ACADM,CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LHX8,LRRIQ3,SLC44A5,TNNI3K,TYW3"
TCGA.AG.3909.01A	1	74665326	74716309	7	-1.3588	LARGE-LOSS	FOCAL	3	"FPGT,FPGT-TNNI3K,TNNI3K"
TCGA.AA.A00N.01A	1	75606623	75614232	4	-1.6943	LARGE-LOSS	FOCAL	1	LHX8
TCGA.DM.A28H	1	76727006	76810601	38	-2.0834	LARGE-LOSS	FOCAL	1	ST6GALNAC3
TCGA.AA.3872	1	77020489	77020802	3	-6.658	LARGE-LOSS	FOCAL	1	ST6GALNAC3
TCGA.AA.A010.01A	1	78308945	78340482	9	-1.5392	LARGE-LOSS	FOCAL	1	FAM73A
TCGA.AA.A00N.01A	1	78326857	78340482	5	-2.0683	LARGE-LOSS	FOCAL	1	FAM73A
TCGA.A6.3808.01A	1	78340482	78401491	10	-2.8873	LARGE-LOSS	FOCAL	2	"FAM73A,NEXN"
TCGA.AA.3811	1	83829674	83829979	3	-7.8661	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	1	83829674	83829979	3	-5.0712	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	83829674	83829979	3	-7.1754	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6509	1	85539126	85541906	5	-7.709	LARGE-LOSS	FOCAL	1	WDR63
TCGA.AG.3909.01A	1	86047570	86048110	3	-2.0989	LARGE-LOSS	FOCAL	1	CYR61
TCGA.AA.A00N.01A	1	86578190	86621955	6	-1.5508	LARGE-LOSS	FOCAL	1	COL24A1
TCGA.A6.3808.01A	1	87181390	87189971	4	-3.5422	LARGE-LOSS	FOCAL	1	SH3GLB1
TCGA.AA.A00N.01A	1	87797679	87810379	4	-1.6802	LARGE-LOSS	FOCAL	1	LMO4
TCGA.AA.A010.01A	1	87797679	87810379	4	-2.3094	LARGE-LOSS	FOCAL	1	LMO4
TCGA.AA.3811	1	88253548	88257853	3	-7.78	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3869	1	88253548	88257853	3	-4.4792	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	1	88344232	88344645	3	-5.481	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	88344232	88344645	3	-5.6138	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	89582668	89598901	7	-1.4166	LARGE-LOSS	FOCAL	2	"GBP2,GBP7"
TCGA.AA.A01I.01A	1	89843621	89843965	2	-3.3159	LARGE-LOSS	FOCAL	1	GBP6
TCGA.AZ.4682	1	90566678	90569360	3	-5.1326	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	91177942	91182081	3	-2.4286	LARGE-LOSS	FOCAL	1	BARHL2
TCGA.AA.A00N.01A	1	91850667	91989589	15	-1.7322	LARGE-LOSS	FOCAL	2	"CDC7,HFM1"
TCGA.AA.3941	1	91919781	91923712	5	-3.7226	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	91919781	91923712	5	-3.8711	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3580	1	92193661	92196052	3	-6.5291	LARGE-LOSS	FOCAL	1	TGFBR3
TCGA.A6.3808.01A	1	92262824	92470668	18	-1.9455	LARGE-LOSS	FOCAL	2	"BRDT,TGFBR3"
TCGA.AA.A010.01A	1	92469924	92518015	9	-1.7633	LARGE-LOSS	FOCAL	2	"BRDT,EPHX4"
TCGA.AA.A010.01A	1	92941539	92979165	6	-1.662	LARGE-LOSS	FOCAL	2	"EVI5,GFI1"
TCGA.AG.3909.01A	1	93648914	93657520	4	-1.5616	LARGE-LOSS	FOCAL	1	CCDC18
TCGA.A6.3808.01A	1	93657520	93987569	30	-1.3582	LARGE-LOSS	FOCAL	3	"CCDC18,DR1,FNBP1L"
TCGA.AA.3844	1	93990328	94019527	3	-1.3939	LARGE-LOSS	FOCAL	1	FNBP1L
TCGA.AA.3941	1	93990328	94019527	3	-1.6073	LARGE-LOSS	FOCAL	1	FNBP1L
TCGA.AA.A010.01A	1	94354519	94370015	6	-1.5233	LARGE-LOSS	FOCAL	1	GCLM
TCGA.AG.3909.01A	1	100316538	100329945	5	-1.744	LARGE-LOSS	FOCAL	1	AGL
TCGA.AA.A00N.01A	1	100316538	100336297	7	-1.6136	LARGE-LOSS	FOCAL	1	AGL
TCGA.AA.A01K.01A	1	100533482	100534012	2	-5.098	LARGE-LOSS	FOCAL	1	HIAT1
TCGA.AG.A00H.01A	1	100533482	100535104	3	-3.7319	LARGE-LOSS	FOCAL	1	HIAT1
TCGA.AA.A010.01A	1	100661781	100700948	10	-1.719	LARGE-LOSS	FOCAL	1	DBT
TCGA.AA.A00N.01A	1	100671725	100684135	7	-1.6313	LARGE-LOSS	FOCAL	1	DBT
TCGA.5M.AAT4	1	100793130	100793933	3	-6.8229	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	100983724	101005316	3	-2.5392	LARGE-LOSS	FOCAL	2	"CDC14A,GPR88"
TCGA.AA.A00Q.01A	1	101361772	101387215	8	-1.4251	LARGE-LOSS	FOCAL	1	SLC30A7
TCGA.AG.3881	1	101788835	101801212	3	-2.046	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	1	102016093	102016642	3	-4.4083	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	1	103363611	103484293	42	-1.6163	LARGE-LOSS	FOCAL	1	COL11A1
TCGA.AA.A010.01A	1	104068691	104094286	4	-1.9143	LARGE-LOSS	FOCAL	1	RNPC3
TCGA.DM.A28M.01A	1	104202930	104297370	5	-1.3656	LARGE-LOSS	FOCAL	3	"AMY1A,AMY1B,AMY1C"
TCGA.AA.3509.01A	1	108994793	109007758	2	-3.5972	LARGE-LOSS	FOCAL	1	NBPF6
TCGA.AZ.4684.01A	1	108994793	109007758	2	-3.509	LARGE-LOSS	FOCAL	1	NBPF6
TCGA.AA.A00N.01A	1	109172143	109241775	16	-2.0809	LARGE-LOSS	FOCAL	3	"FAM102B,HENMT1,PRPF38B"
TCGA.AG.3909.01A	1	109177665	109202409	8	-2.0637	LARGE-LOSS	FOCAL	2	"FAM102B,HENMT1"
TCGA.AA.A00N.01A	1	109275867	109302556	9	-1.4298	LARGE-LOSS	FOCAL	2	"FNDC7,STXBP3"
TCGA.F5.6863	1	109366553	109371873	3	-4.4157	LARGE-LOSS	FOCAL	1	AKNAD1
TCGA.AA.A00N.01A	1	109607113	109656181	13	-1.7526	LARGE-LOSS	FOCAL	3	"C1orf194,TAF13,TMEM167B"
TCGA.AG.3909.01A	1	109607113	109656181	11	-1.8432	LARGE-LOSS	FOCAL	3	"C1orf194,TAF13,TMEM167B"
TCGA.AG.A02X.01A	1	109731676	109732181	2	-3.3541	LARGE-LOSS	FOCAL	1	KIAA1324
TCGA.AA.A010.01A	1	109766534	109795222	15	-2.4168	LARGE-LOSS	FOCAL	2	"CELSR2,SARS"
TCGA.AA.A004.01A	1	109801003	109808679	12	-2.9487	LARGE-LOSS	FOCAL	1	CELSR2
TCGA.AA.A010.01A	1	109801003	109810126	13	-1.7096	LARGE-LOSS	FOCAL	1	CELSR2
TCGA.AA.A01I.01A	1	109825099	109837701	3	-2.6498	LARGE-LOSS	FOCAL	2	"MYBPHL,PSRC1"
TCGA.AA.A010.01A	1	109944575	110050476	30	-1.8283	LARGE-LOSS	FOCAL	5	"AMIGO1,ATXN7L2,CYB561D1,PSMA5,SYPL2"
TCGA.AA.A01C.01A	1	110198933	110200111	4	-2.5657	LARGE-LOSS	FOCAL	1	GSTM4
TCGA.AA.A00N.01A	1	110279642	110281986	4	-1.8815	LARGE-LOSS	FOCAL	1	GSTM3
TCGA.AA.A010.01A	1	111136456	111146456	4	-2.7846	LARGE-LOSS	FOCAL	1	KCNA2
TCGA.AA.A00N.01A	1	111742227	111784820	12	-1.3736	LARGE-LOSS	FOCAL	2	"CHI3L2,DENND2D"
TCGA.AA.A01C.01A	1	111773364	111778634	5	-1.7275	LARGE-LOSS	FOCAL	1	CHI3L2
TCGA.AG.A00H.01A	1	111983813	111984610	2	-5.103	LARGE-LOSS	FOCAL	1	WDR77
TCGA.AA.A00N.01A	1	112299219	112308342	6	-2.0837	LARGE-LOSS	FOCAL	1	DDX20
TCGA.AA.A010.01A	1	113189792	113209630	7	-1.7455	LARGE-LOSS	FOCAL	1	CAPZA1
TCGA.AA.A00N.01A	1	113189792	113212572	9	-1.6938	LARGE-LOSS	FOCAL	1	CAPZA1
TCGA.AA.A010.01A	1	113234240	113256112	22	-1.7078	LARGE-LOSS	FOCAL	3	"MOV10,PPM1J,RHOC"
TCGA.AA.A01C.01A	1	113236610	113237990	3	-2.5772	LARGE-LOSS	FOCAL	1	MOV10
TCGA.AG.A02G.01A	1	113254915	113255315	2	-1.8349	LARGE-LOSS	FOCAL	1	PPM1J
TCGA.AA.A00N.01A	1	114300263	114310817	5	-1.9502	LARGE-LOSS	FOCAL	2	"PHTF1,RSBN1"
TCGA.F4.6460	1	114776790	114806792	11	-2.8197	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	115316844	115322692	4	-1.6126	LARGE-LOSS	FOCAL	1	SIKE1
TCGA.AA.A00N.01A	1	116382418	116385314	3	-2.41	LARGE-LOSS	FOCAL	1	NHLH2
TCGA.CK.5914.01A	1	116382418	116385314	3	-1.5191	LARGE-LOSS	FOCAL	1	NHLH2
TCGA.AA.A010.01A	1	116382418	116534620	5	-1.492	LARGE-LOSS	FOCAL	2	"NHLH2,SLC22A15"
TCGA.AA.A010.01A	1	117944806	118039368	9	-1.3849	LARGE-LOSS	FOCAL	1	MAN1A2
TCGA.AA.3941	1	118032156	118068933	12	-3.2469	LARGE-LOSS	FOCAL	1	MAN1A2
TCGA.AA.3850	1	118047908	118068933	9	-2.91395	LARGE-LOSS	FOCAL	1	MAN1A2
TCGA.AA.3850	1	119169363	119259806	32	-1.45315	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	120165291	120168456	3	-2.6122	LARGE-LOSS	FOCAL	1	ZNF697
TCGA.G4.6317	1	144849543	144869083	3	-4.2512	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AD.6965	1	144876744	144880108	3	-3.8614	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AG.3732	1	144879980	144893049	3	-7.5663	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.A6.2686	1	144916994	144921856	3	-4.2645	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.3854	1	144916994	144921856	3	-4.3155	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.3811	1	144921856	144957687	3	-6.7225	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.3837	1	144921856	144957687	3	-7.1785	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.3949	1	144921856	144957687	3	-4.1357	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.EI.6885	1	144921856	144957687	3	-3.6996	LARGE-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.CM.6164	1	145009381	145382123	3	-4.6983	LARGE-LOSS	FOCAL	6	"NBPF10,NBPF20,NBPF9,NOTCH2NL,PDE4DIP,SEC22B"
TCGA.A6.3808.01A	1	145248799	145328371	8	-2.1786	LARGE-LOSS	FOCAL	4	"NBPF10,NBPF20,NBPF9,NOTCH2NL"
TCGA.AA.A01I.01A	1	145527564	145528518	4	-3.9129	LARGE-LOSS	FOCAL	3	"ITGA10,NBPF10,NBPF20"
TCGA.AG.A02G.01A	1	145530831	145534034	7	-2.5013	LARGE-LOSS	FOCAL	3	"ITGA10,NBPF10,NBPF20"
TCGA.AG.A02G.01A	1	145541402	145542145	3	-2.8126	LARGE-LOSS	FOCAL	3	"ITGA10,NBPF10,NBPF20"
TCGA.AG.3909.01A	1	145557001	145609163	36	-1.422	LARGE-LOSS	FOCAL	6	"ANKRD35,NBPF10,NBPF20,NUDT17,PIAS3,POLR3C"
TCGA.AA.A01C.01A	1	145608077	145609163	2	-3.455	LARGE-LOSS	FOCAL	3	"NBPF10,NBPF20,POLR3C"
TCGA.AA.A010.01A	1	147083564	147095643	7	-1.466	LARGE-LOSS	FOCAL	1	BCL9
TCGA.AG.4022	1	149040065	149715561	8	-5.5719	LARGE-LOSS	FOCAL	2	"PPIAL4A,PPIAL4C"
TCGA.AG.A02G.01A	1	149900698	149902643	5	-2.0801	LARGE-LOSS	FOCAL	1	MTMR11
TCGA.AA.A010.01A	1	150116844	150130975	6	-2.5724	LARGE-LOSS	FOCAL	2	"PLEKHO1,VPS45"
TCGA.AA.A004.01A	1	150236032	150236928	2	-6.7739	LARGE-LOSS	FOCAL	1	CA14
TCGA.A6.3808.01A	1	150305110	150325260	12	-2.5932	LARGE-LOSS	FOCAL	1	PRPF3
TCGA.AG.A025.01A	1	150318443	150321567	3	-3.7425	LARGE-LOSS	FOCAL	1	PRPF3
TCGA.AG.A02X.01A	1	150459861	150461422	3	-3.0795	LARGE-LOSS	FOCAL	1	TARS2
TCGA.AA.A010.01A	1	150524708	150529047	8	-2.0094	LARGE-LOSS	FOCAL	1	ADAMTSL4
TCGA.AA.A010.01A	1	150529377	150549803	9	-1.4585	LARGE-LOSS	FOCAL	2	"ADAMTSL4,MCL1"
TCGA.AA.A00N.01A	1	150683974	150737072	13	-1.6603	LARGE-LOSS	FOCAL	2	"CTSS,HORMAD1"
TCGA.A6.3808.01A	1	150684221	150691899	5	-2.7808	LARGE-LOSS	FOCAL	1	HORMAD1
TCGA.AG.3909.01A	1	150686488	150737072	11	-1.4327	LARGE-LOSS	FOCAL	2	"CTSS,HORMAD1"
TCGA.CK.5914.01A	1	150689577	150722469	5	-1.427	LARGE-LOSS	FOCAL	2	"CTSS,HORMAD1"
TCGA.AF.4110	1	150803026	150809115	3	-1.8765	LARGE-LOSS	FOCAL	1	ARNT
TCGA.AA.A00N.01A	1	150811865	150830776	5	-1.621	LARGE-LOSS	FOCAL	1	ARNT
TCGA.AA.A010.01A	1	150931606	150960543	22	-2.2232	LARGE-LOSS	FOCAL	3	"ANXA9,CERS2,SETDB1"
TCGA.AG.A025.01A	1	150972291	150974631	5	-3.2374	LARGE-LOSS	FOCAL	1	FAM63A
TCGA.AA.A00N.01A	1	151015791	151039664	10	-1.5447	LARGE-LOSS	FOCAL	4	"BNIPL,C1orf56,CDC42SE1,MLLT11"
TCGA.AG.3909.01A	1	151015791	151039664	10	-1.4219	LARGE-LOSS	FOCAL	4	"BNIPL,C1orf56,CDC42SE1,MLLT11"
TCGA.A6.3808.01A	1	151089821	151106385	4	-2.8552	LARGE-LOSS	FOCAL	2	"GABPB2,SEMA6C"
TCGA.AA.A010.01A	1	151089821	151114938	17	-2.4054	LARGE-LOSS	FOCAL	2	"GABPB2,SEMA6C"
TCGA.AA.A00N.01A	1	151693976	151755347	27	-1.6849	LARGE-LOSS	FOCAL	4	"MRPL9,OAZ3,RIIAD1,TDRKH"
TCGA.AG.3909.01A	1	151739617	151755347	15	-1.7673	LARGE-LOSS	FOCAL	2	"OAZ3,TDRKH"
TCGA.AG.A025.01A	1	151819575	151820610	3	-4.2406	LARGE-LOSS	FOCAL	1	THEM5
TCGA.A6.3808.01A	1	152185515	152190805	5	-2.9861	LARGE-LOSS	FOCAL	1	HRNR
TCGA.AG.3909.01A	1	153507141	153516198	6	-1.4458	LARGE-LOSS	FOCAL	3	"S100A4,S100A5,S100A6"
TCGA.AA.A00N.01A	1	153631556	153642579	14	-1.8966	LARGE-LOSS	FOCAL	2	"ILF2,SNAPIN"
TCGA.AG.3909.01A	1	153631893	153643299	14	-1.7155	LARGE-LOSS	FOCAL	2	"ILF2,SNAPIN"
TCGA.AG.A02G.01A	1	153635453	153636492	2	-5.7184	LARGE-LOSS	FOCAL	1	ILF2
TCGA.AG.A01N.01A	1	153907196	153909954	4	-3.9979	LARGE-LOSS	FOCAL	1	DENND4B
TCGA.AA.A01K.01A	1	153907196	153912859	7	-4.245	LARGE-LOSS	FOCAL	1	DENND4B
TCGA.AA.A017.01A	1	153908499	153909954	3	-4.1281	LARGE-LOSS	FOCAL	1	DENND4B
TCGA.AA.A02H.01A	1	153908499	153909954	3	-3.6607	LARGE-LOSS	FOCAL	1	DENND4B
TCGA.AG.3909.01A	1	153920583	153955637	21	-1.342	LARGE-LOSS	FOCAL	5	"CREB3L4,CRTC2,JTB,RAB13,SLC39A1"
TCGA.AA.A00O.01A	1	153940961	153941760	3	-6.3412	LARGE-LOSS	FOCAL	1	CREB3L4
TCGA.AA.A010.01A	1	154456587	154516797	15	-1.3769	LARGE-LOSS	FOCAL	2	"SHE,TDRD10"
TCGA.AA.A010.01A	1	154517244	154528338	13	-2.6761	LARGE-LOSS	FOCAL	2	"TDRD10,UBE2Q1"
TCGA.AA.A010.01A	1	154530655	154548210	6	-1.3559	LARGE-LOSS	FOCAL	2	"CHRNB2,UBE2Q1"
TCGA.AA.A010.01A	1	155141868	155174606	34	-1.7335	LARGE-LOSS	FOCAL	4	"KRTCAP2,MUC1,THBS3,TRIM46"
TCGA.A6.3808.01A	1	155158549	155184794	29	-1.8864	LARGE-LOSS	FOCAL	3	"MTX1,MUC1,THBS3"
TCGA.AA.A01K.01A	1	155159660	155160161	2	-4.8555	LARGE-LOSS	FOCAL	1	MUC1
TCGA.AA.A01C.01A	1	155171735	155172010	2	-4.0204	LARGE-LOSS	FOCAL	1	THBS3
TCGA.AA.A010.01A	1	156025057	156051286	10	-1.9445	LARGE-LOSS	FOCAL	3	"LAMTOR2,MEX3A,RAB25"
TCGA.AA.A02J.01A	1	156220322	156222688	5	-4.6751	LARGE-LOSS	FOCAL	1	SMG5
TCGA.AA.A010.01A	1	156314344	156399105	19	-1.6796	LARGE-LOSS	FOCAL	3	"C1orf61,RHBG,TSACC"
TCGA.AF.3914.01A	1	156351546	156354543	4	-1.5002	LARGE-LOSS	FOCAL	1	RHBG
TCGA.AA.A010.01A	1	156551150	156561547	8	-1.5174	LARGE-LOSS	FOCAL	1	TTC24
TCGA.AA.A010.01A	1	156562150	156571115	9	-2.4478	LARGE-LOSS	FOCAL	2	"APOA1BP,GPATCH4"
TCGA.AA.A010.01A	1	156705485	156721806	10	-1.9824	LARGE-LOSS	FOCAL	3	"HDGF,MRPL24,RRNAD1"
TCGA.AA.A01K.01A	1	157067632	157490199	11	-1.6289	LARGE-LOSS	FOCAL	3	"ETV3,ETV3L,FCRL5"
TCGA.AG.3909.01A	1	157103855	157106020	3	-1.5365	LARGE-LOSS	FOCAL	1	ETV3
TCGA.AG.3909.01A	1	158323711	158326541	6	-1.4147	LARGE-LOSS	FOCAL	1	CD1E
TCGA.AA.3941	1	158681007	158681742	3	-7.2073	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A02X.01A	1	158985635	158986321	2	-2.9541	LARGE-LOSS	FOCAL	1	IFI16
TCGA.A6.3808.01A	1	159015039	159019174	2	-4.8525	LARGE-LOSS	FOCAL	1	IFI16
TCGA.AA.A02E.01A	1	159826267	159827831	3	-4.3713	LARGE-LOSS	FOCAL	1	VSIG8
TCGA.AA.A00N.01A	1	161009668	161018455	11	-1.417	LARGE-LOSS	FOCAL	2	"ARHGAP30,USF1"
TCGA.AG.3909.01A	1	161009668	161018455	11	-1.6996	LARGE-LOSS	FOCAL	2	"ARHGAP30,USF1"
TCGA.AA.A00N.01A	1	161069098	161145546	42	-1.3479	LARGE-LOSS	FOCAL	8	"B4GALT3,DEDD,KLHDC9,NIT1,PFDN2,PPOX,UFC1,USP21"
TCGA.AG.3909.01A	1	161069098	161145546	42	-1.8046	LARGE-LOSS	FOCAL	8	"B4GALT3,DEDD,KLHDC9,NIT1,PFDN2,PPOX,UFC1,USP21"
TCGA.AA.A02H.01A	1	161126687	161128141	5	-3.5716	LARGE-LOSS	FOCAL	1	UFC1
TCGA.A6.3808.01A	1	161476073	161643710	26	-1.8849	LARGE-LOSS	FOCAL	6	"FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,HSPA6"
TCGA.AA.A01V	1	161513758	161520569	3	-2.0225	LARGE-LOSS	FOCAL	1	FCGR3A
TCGA.F5.6465	1	161513758	161520569	3	-2.1869	LARGE-LOSS	FOCAL	1	FCGR3A
TCGA.CK.5914.01A	1	161721420	161726539	4	-1.3666	LARGE-LOSS	FOCAL	1	DUSP12
TCGA.D5.6931	1	161940253	161942508	3	-1.6811	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3594	1	165681583	165684676	3	-1.4998	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	166123909	166833029	12	-2.419	LARGE-LOSS	FOCAL	3	"FAM78B,POGK,TADA1"
TCGA.CK.4950	1	166261523	166262122	3	-7.0093	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	166925971	166987047	12	-1.7874	LARGE-LOSS	FOCAL	2	"ILDR2,MAEL"
TCGA.AA.3655	1	167617698	167619332	3	-4.0474	LARGE-LOSS	FOCAL	1	RCSD1
TCGA.AA.A00N.01A	1	167778868	167806423	11	-1.3834	LARGE-LOSS	FOCAL	1	ADCY10
TCGA.AG.3909.01A	1	168148269	168169100	7	-1.4128	LARGE-LOSS	FOCAL	1	TIPRL
TCGA.AG.4021	1	168986491	168987210	3	-1.5109	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	169842769	169890765	5	-1.5028	LARGE-LOSS	FOCAL	2	"KIFAP3,SCYL3"
TCGA.AA.3949	1	169929218	169935001	3	-3.9394	LARGE-LOSS	FOCAL	1	KIFAP3
TCGA.AA.A00N.01A	1	171673574	171707425	7	-1.4197	LARGE-LOSS	FOCAL	1	VAMP4
TCGA.AA.A00N.01A	1	172501621	172560076	19	-1.3465	LARGE-LOSS	FOCAL	1	SUCO
TCGA.AA.A010.01A	1	173446484	173474337	8	-2.2314	LARGE-LOSS	FOCAL	2	"PRDX6,SLC9C2"
TCGA.AA.A00N.01A	1	174668641	174671204	3	-1.5818	LARGE-LOSS	FOCAL	1	RABGAP1L
TCGA.AG.A01J.01A	1	177901597	177902592	3	-2.9169	LARGE-LOSS	FOCAL	1	SEC16B
TCGA.AA.A010.01A	1	179012941	179035864	6	-1.5157	LARGE-LOSS	FOCAL	1	FAM20B
TCGA.AA.A01C.01A	1	179079365	179083966	4	-1.9984	LARGE-LOSS	FOCAL	1	ABL2
TCGA.AF.3914.01A	1	179095461	179102387	3	-1.4061	LARGE-LOSS	FOCAL	1	ABL2
TCGA.AG.3909.01A	1	179095461	179102387	3	-1.7472	LARGE-LOSS	FOCAL	1	ABL2
TCGA.AA.A010.01A	1	179502874	179533775	9	-1.3516	LARGE-LOSS	FOCAL	2	"AXDND1,NPHS2"
TCGA.AA.A00N.01A	1	179523542	179590111	11	-1.4547	LARGE-LOSS	FOCAL	3	"AXDND1,NPHS2,TDRD5"
TCGA.AG.3909.01A	1	179561783	179564746	3	-2.0783	LARGE-LOSS	FOCAL	1	TDRD5
TCGA.CK.5914.01A	1	179561783	179564746	3	-1.6295	LARGE-LOSS	FOCAL	1	TDRD5
TCGA.AA.3850	1	179590801	179593165	3	-2.26745	LARGE-LOSS	FOCAL	1	TDRD5
TCGA.AG.A01N.01A	1	180913496	180914392	2	-4.1148	LARGE-LOSS	FOCAL	1	KIAA1614
TCGA.AG.A02X.01A	1	180913496	180914392	2	-3.243	LARGE-LOSS	FOCAL	1	KIAA1614
TCGA.AA.3850	1	181253113	181258098	4	-4.31825	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	1	182571070	182571497	2	-5.2501	LARGE-LOSS	FOCAL	1	RGS16
TCGA.CK.5914.01A	1	182898732	182921817	5	-1.4368	LARGE-LOSS	FOCAL	1	SHCBP1L
TCGA.AG.A01J.01A	1	183093786	183102499	9	-1.4537	LARGE-LOSS	FOCAL	1	LAMC1
TCGA.AA.A00N.01A	1	185267126	185703925	11	-1.7027	LARGE-LOSS	FOCAL	2	"HMCN1,IVNS1ABP"
TCGA.AG.A025.01A	1	186134175	186135892	3	-1.541	LARGE-LOSS	FOCAL	1	HMCN1
TCGA.A6.3808.01A	1	186273203	186280525	9	-2.5904	LARGE-LOSS	FOCAL	1	PRG4
TCGA.AG.A01N.01A	1	186343991	186352113	4	-1.9364	LARGE-LOSS	FOCAL	2	"C1orf27,TPR"
TCGA.AA.A00N.01A	1	186643478	186649298	8	-1.3647	LARGE-LOSS	FOCAL	1	PTGS2
TCGA.AA.3864	1	188568803	188573090	3	-3.4381	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	1	189147125	189181154	12	-4.2898	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	1	189147179	189151426	3	-7.1273	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	1	189147179	189151426	3	-4.7958	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	1	189151274	189155454	3	-6.7964	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3866	1	189151274	189155454	3	-2.2939	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	1	189151274	189155454	3	-4.1296	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	1	189151274	189155454	3	-5.6132	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3955	1	189151274	189155454	3	-6.6593	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	1	189151274	189181154	10	-3.5701	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	189151274	189181154	10	-4.537	LARGE-LOSS	FOCAL	0	None
TCGA.CA.5797	1	189432043	189515684	15	-1.6479	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56N	1	191846764	191867710	4	-4.2048	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	192778154	192780505	4	-1.6366	LARGE-LOSS	FOCAL	1	RGS2
TCGA.AA.A02H.01A	1	196743957	196857212	13	-1.7359	LARGE-LOSS	FOCAL	3	"CFHR1,CFHR3,CFHR4"
TCGA.A6.3810.01A	1	196748300	196800878	10	-1.4814	LARGE-LOSS	FOCAL	2	"CFHR1,CFHR3"
TCGA.A6.3808.01A	1	196748904	196887298	12	-1.6999	LARGE-LOSS	FOCAL	3	"CFHR1,CFHR3,CFHR4"
TCGA.AG.A025.01A	1	197108845	197115219	7	-1.3763	LARGE-LOSS	FOCAL	1	ASPM
TCGA.AG.3909.01A	1	197874888	197881579	3	-1.5553	LARGE-LOSS	FOCAL	1	C1orf53
TCGA.AA.A00N.01A	1	197874888	197886447	4	-1.5257	LARGE-LOSS	FOCAL	2	"C1orf53,LHX9"
TCGA.AA.3815.01A	1	198661408	198663200	2	-1.3888	LARGE-LOSS	FOCAL	1	PTPRC
TCGA.AA.A00N.01A	1	199996907	200017288	6	-1.6041	LARGE-LOSS	FOCAL	1	NR5A2
TCGA.AA.A00N.01A	1	200376197	200377474	3	-1.9084	LARGE-LOSS	FOCAL	1	ZNF281
TCGA.AA.A010.01A	1	200972692	201012412	11	-1.3884	LARGE-LOSS	FOCAL	2	"CACNA1S,KIF21B"
TCGA.AA.A01C.01A	1	201194914	201195963	2	-3.8533	LARGE-LOSS	FOCAL	1	IGFN1
TCGA.AG.A02X.01A	1	201194914	201195963	2	-3.5132	LARGE-LOSS	FOCAL	1	IGFN1
TCGA.AA.A010.01A	1	201932694	201973434	13	-1.3419	LARGE-LOSS	FOCAL	2	"RNPEP,TIMM17A"
TCGA.AA.A01C.01A	1	201973434	201974634	2	-2.1361	LARGE-LOSS	FOCAL	1	RNPEP
TCGA.AA.A010.01A	1	202096827	202196998	25	-1.5102	LARGE-LOSS	FOCAL	4	"ARL8A,GPR37L1,LGR6,PTPN7"
TCGA.AG.3909.01A	1	202698125	202718022	14	-1.3756	LARGE-LOSS	FOCAL	1	KDM5B
TCGA.AA.A00N.01A	1	202698125	202719735	15	-1.6346	LARGE-LOSS	FOCAL	1	KDM5B
TCGA.AA.A00N.01A	1	202861609	202991963	34	-1.347	LARGE-LOSS	FOCAL	5	"ADIPOR1,CYB5R1,KLHL12,TMEM183A,TMEM183B"
TCGA.AG.3909.01A	1	202861609	202991963	33	-1.3406	LARGE-LOSS	FOCAL	5	"ADIPOR1,CYB5R1,KLHL12,TMEM183A,TMEM183B"
TCGA.AG.A02X.01A	1	203148526	203151811	5	-2.8049	LARGE-LOSS	FOCAL	1	CHI3L1
TCGA.AA.3850	1	203222022	203234036	3	-2.79545	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	1	203465115	203472651	6	-1.7881	LARGE-LOSS	FOCAL	1	OPTC
TCGA.A6.3808.01A	1	203742955	203832751	19	-2.2621	LARGE-LOSS	FOCAL	4	"LAX1,SNRPE,ZBED6,ZC3H11A"
TCGA.AA.A010.01A	1	204101249	204135277	19	-1.8589	LARGE-LOSS	FOCAL	2	"ETNK2,REN"
TCGA.AA.3979	1	204693035	204694079	3	-4.4794	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	205585642	205592757	4	-2.6667	LARGE-LOSS	FOCAL	1	ELK4
TCGA.A6.3808.01A	1	206137288	206153903	5	-3.0428	LARGE-LOSS	FOCAL	2	"FAM72A,FAM72C"
TCGA.A6.3808.01A	1	206516150	206579729	6	-3.2702	LARGE-LOSS	FOCAL	3	"SRGAP2,SRGAP2B,SRGAP2C"
TCGA.AG.3909.01A	1	207495521	207504433	5	-1.7556	LARGE-LOSS	FOCAL	1	CD55
TCGA.AA.A010.01A	1	207963532	208070782	14	-1.4772	LARGE-LOSS	FOCAL	2	"CD34,CD46"
TCGA.AG.3727	1	208853790	208853908	3	-6.1331	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	1	210212423	210244469	10	-1.5435	LARGE-LOSS	FOCAL	1	SYT14
TCGA.AA.3982	1	211142740	211143053	3	-4.6178	LARGE-LOSS	FOCAL	1	KCNH1
TCGA.AA.A00N.01A	1	212179954	212194378	6	-1.6242	LARGE-LOSS	FOCAL	1	INTS7
TCGA.AA.A00N.01A	1	212870256	212960851	7	-1.651	LARGE-LOSS	FOCAL	2	"BATF3,NSL1"
TCGA.A6.2671	1	213005011	213006396	3	-6.0843	LARGE-LOSS	FOCAL	1	SPATA45
TCGA.AA.A010.01A	1	213124853	213147250	7	-1.8091	LARGE-LOSS	FOCAL	1	VASH2
TCGA.AA.3941	1	214130412	214140992	12	-1.6994	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	1	214133358	214135921	3	-2.2262	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	214787061	214795373	6	-1.9408	LARGE-LOSS	FOCAL	1	CENPF
TCGA.AA.A010.01A	1	214787061	214795373	6	-2.9965	LARGE-LOSS	FOCAL	1	CENPF
TCGA.A6.3808.01A	1	214787061	214828577	17	-1.9681	LARGE-LOSS	FOCAL	1	CENPF
TCGA.AA.A010.01A	1	215256574	215259664	2	-3.3521	LARGE-LOSS	FOCAL	1	KCNK2
TCGA.AF.3914.01A	1	215256574	215259664	2	-1.6994	LARGE-LOSS	FOCAL	1	KCNK2
TCGA.AA.3850	1	215391593	215530323	49	-1.75505	LARGE-LOSS	FOCAL	1	KCNK2
TCGA.AA.3549	1	216988170	216993381	3	-2.4391	LARGE-LOSS	FOCAL	1	ESRRG
TCGA.AA.3977	1	217376664	217377069	3	-2.8836	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	1	217510207	217514806	3	-7.2971	LARGE-LOSS	FOCAL	0	None
TCGA.AY.5543	1	220971047	220971833	3	-1.3405	LARGE-LOSS	FOCAL	1	1-Mar
TCGA.AA.A010.01A	1	222794479	222806398	8	-2.0853	LARGE-LOSS	FOCAL	1	MIA3
TCGA.AA.A010.01A	1	223532335	223536572	3	-1.9947	LARGE-LOSS	FOCAL	1	SUSD4
TCGA.AA.A010.01A	1	224599090	224619130	5	-2.3875	LARGE-LOSS	FOCAL	1	WDR26
TCGA.AG.A023.01A	1	225211266	225579946	10	-2.4557	LARGE-LOSS	FOCAL	1	DNAH14
TCGA.AA.A010.01A	1	225597961	225611582	9	-1.4811	LARGE-LOSS	FOCAL	1	LBR
TCGA.AG.3909.01A	1	225605638	225611582	5	-1.4297	LARGE-LOSS	FOCAL	1	LBR
TCGA.AF.A56K	1	226050502	226058330	5	-2.1918	LARGE-LOSS	FOCAL	1	TMEM63A
TCGA.AF.4110	1	226678383	226682047	3	-1.4664	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	228329324	228433065	23	-1.921	LARGE-LOSS	FOCAL	4	"GJC2,GUK1,IBA57,OBSCN"
TCGA.AG.3909.01A	1	228595873	228646019	9	-1.5061	LARGE-LOSS	FOCAL	4	"HIST3H2A,HIST3H2BB,HIST3H3,TRIM17"
TCGA.AA.A010.01A	1	228648004	229433202	17	-1.3791	LARGE-LOSS	FOCAL	4	"BTNL10,RAB4A,RHOU,RNF187"
TCGA.CK.4947	1	228731676	228741146	3	-4.5826	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	1	229653885	229779263	22	-1.5445	LARGE-LOSS	FOCAL	3	"ABCB10,TAF5L,URB2"
TCGA.AA.A010.01A	1	229675166	229737918	7	-1.3947	LARGE-LOSS	FOCAL	2	"ABCB10,TAF5L"
TCGA.AA.A010.01A	1	229745806	229767969	4	-2.8252	LARGE-LOSS	FOCAL	2	"TAF5L,URB2"
TCGA.AA.A010.01A	1	231093918	231155546	8	-1.5084	LARGE-LOSS	FOCAL	3	"ARV1,FAM89A,TTC13"
TCGA.AA.A010.01A	1	234593361	234745021	13	-2.1829	LARGE-LOSS	FOCAL	2	"IRF2BP2,TARBP1"
TCGA.AA.A00N.01A	1	234599532	235323799	24	-1.5575	LARGE-LOSS	FOCAL	4	"IRF2BP2,RBM34,TARBP1,TOMM20"
TCGA.AG.4009.01A	1	234742846	234743243	2	-1.5248	LARGE-LOSS	FOCAL	1	IRF2BP2
TCGA.AG.3612	1	235005121	235007554	4	-7.4712	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	235294996	235323799	8	-1.4131	LARGE-LOSS	FOCAL	1	RBM34
TCGA.CK.5914.01A	1	235294996	235323799	9	-1.4588	LARGE-LOSS	FOCAL	1	RBM34
TCGA.AA.A00N.01A	1	235490135	235543328	7	-1.3893	LARGE-LOSS	FOCAL	3	"ARID4B,GGPS1,TBCE"
TCGA.AG.3728	1	235701552	235705156	3	-3.3675	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6307	1	235701552	235705156	3	-6.2755	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	235826202	235840752	5	-2.03	LARGE-LOSS	FOCAL	1	LYST
TCGA.AG.A011.01A	1	237713802	237729815	2	-1.4697	LARGE-LOSS	FOCAL	1	RYR2
TCGA.AA.A00N.01A	1	237817526	237850679	12	-1.3968	LARGE-LOSS	FOCAL	1	RYR2
TCGA.AA.3941	1	238305652	238362536	21	-1.396	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	238672155	238676901	4	-1.866	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	1	239011262	239011989	3	-4.6937	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	1	239011262	239011989	3	-5.0168	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6461	1	240583595	240594410	3	-3.109	LARGE-LOSS	FOCAL	1	FMN2
TCGA.AA.3530	1	240818647	240821072	3	-6.7363	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	1	241684830	241709303	16	-1.34405	LARGE-LOSS	FOCAL	1	KMO
TCGA.AA.3850	1	241880363	241886429	5	-1.66045	LARGE-LOSS	FOCAL	1	WDR64
TCGA.AA.A00N.01A	1	242013690	242024669	7	-1.7174	LARGE-LOSS	FOCAL	1	EXO1
TCGA.AA.3519	1	242286904	242294118	3	-6.7198	LARGE-LOSS	FOCAL	1	PLD5
TCGA.AA.A00N.01A	1	243652275	243675606	4	-1.397	LARGE-LOSS	FOCAL	2	"AKT3,SDCCAG8"
TCGA.AA.3850	1	243781173	243799825	5	-2.07025	LARGE-LOSS	FOCAL	1	AKT3
TCGA.AA.A00N.01A	1	244006352	244219037	5	-1.5697	LARGE-LOSS	FOCAL	2	"AKT3,ZBTB18"
TCGA.AA.A010.01A	1	244006352	244219037	5	-2.6445	LARGE-LOSS	FOCAL	2	"AKT3,ZBTB18"
TCGA.CK.5914.01A	1	244214652	244527932	5	-1.474	LARGE-LOSS	FOCAL	2	"C1orf100,ZBTB18"
TCGA.AA.A00N.01A	1	244999703	245025716	16	-2.2439	LARGE-LOSS	FOCAL	2	"COX20,HNRNPU"
TCGA.AA.A010.01A	1	245005215	245021984	12	-2.4129	LARGE-LOSS	FOCAL	2	"COX20,HNRNPU"
TCGA.AG.3909.01A	1	245005215	245025716	13	-1.6532	LARGE-LOSS	FOCAL	2	"COX20,HNRNPU"
TCGA.CK.5914.01A	1	245021301	245025716	5	-1.5928	LARGE-LOSS	FOCAL	1	HNRNPU
TCGA.AA.A010.01A	1	245022539	245025716	3	-2.0355	LARGE-LOSS	FOCAL	1	HNRNPU
TCGA.AA.3811	1	245637038	245646349	6	-2.1394	LARGE-LOSS	FOCAL	1	KIF26B
TCGA.CK.5912	1	245639750	245646280	3	-4.7153	LARGE-LOSS	FOCAL	1	KIF26B
TCGA.AA.A010.01A	1	245847488	245865718	5	-1.735	LARGE-LOSS	FOCAL	1	KIF26B
TCGA.AA.3850	1	246293715	246300347	5	-1.65715	LARGE-LOSS	FOCAL	1	SMYD3
TCGA.AA.3850	1	246506735	246507982	3	-1.80245	LARGE-LOSS	FOCAL	1	SMYD3
TCGA.AA.3941	1	246506735	246507982	3	-1.3471	LARGE-LOSS	FOCAL	1	SMYD3
TCGA.AA.A010.01A	1	246887718	246907304	5	-1.7196	LARGE-LOSS	FOCAL	1	SCCPDH
TCGA.A6.3808.01A	1	246940188	247081504	36	-1.4804	LARGE-LOSS	FOCAL	1	AHCTF1
TCGA.AA.A01I.01A	1	247263709	247265311	3	-4.0587	LARGE-LOSS	FOCAL	1	ZNF669
TCGA.AA.A010.01A	1	247471728	247492439	6	-1.892	LARGE-LOSS	FOCAL	1	ZNF496
TCGA.AA.3850	1	247975574	247976107	3	-4.50495	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	1	248428637	248429718	3	-5.42645	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A50U	1	248595680	248613322	3	-4.8243	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	1	248601319	248795851	4	-3.0314	LARGE-LOSS	FOCAL	8	"OR2G6,OR2T10,OR2T11,OR2T2,OR2T29,OR2T3,OR2T34,OR2T5"
TCGA.AG.3909.01A	1	248844703	249210793	20	-1.3435	LARGE-LOSS	FOCAL	6	"LYPD8,OR14I1,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.A00N.01A	1	249208014	249213943	5	-2.118	LARGE-LOSS	FOCAL	1	PGBD2
TCGA.AA.A010.01A	1	249208014	249213943	5	-2.4585	LARGE-LOSS	FOCAL	1	PGBD2
TCGA.AA.A00N.01A	2	41541	286103	23	-1.7057	LARGE-LOSS	FOCAL	4	"ACP1,FAM110C,FAM150B,SH3YL1"
TCGA.AG.3909.01A	2	41541	675483	18	-1.4594	LARGE-LOSS	FOCAL	5	"ACP1,FAM110C,FAM150B,SH3YL1,TMEM18"
TCGA.AA.3844	2	958941	966931	3	-1.3577	LARGE-LOSS	FOCAL	1	SNTG2
TCGA.AG.3909.01A	2	1639129	1664645	10	-1.3609	LARGE-LOSS	FOCAL	1	PXDN
TCGA.AA.A01K.01A	2	1982872	3196143	3	-4.8869	LARGE-LOSS	FOCAL	2	"MYT1L,TSSC1"
TCGA.NH.A50V	2	2769051	2770200	3	-7.6407	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3976	2	3107034	3107977	3	-6.5196	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A017.01A	2	3481415	3482963	3	-3.1539	LARGE-LOSS	FOCAL	1	TRAPPC12
TCGA.AA.A00N.01A	2	3517576	3688751	26	-1.7281	LARGE-LOSS	FOCAL	4	"ADI1,COLEC11,RNASEH1,RPS7"
TCGA.AA.A01C.01A	2	3623139	3624120	2	-2.5322	LARGE-LOSS	FOCAL	1	RPS7
TCGA.AA.A01D.01A	2	3691004	3691317	2	-7.2902	LARGE-LOSS	FOCAL	1	COLEC11
TCGA.AG.A01N.01A	2	3691004	3691317	2	-4.0817	LARGE-LOSS	FOCAL	1	COLEC11
TCGA.AA.3844	2	4621132	4654487	16	-1.3588	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	2	4962363	4963393	6	-1.6472	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	2	4962363	4963393	6	-1.7079	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	2	5241030	5245836	3	-1.9156	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3685	2	5611778	5615222	3	-1.5317	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	5832856	7035871	22	-1.6058	LARGE-LOSS	FOCAL	3	"CMPK2,RSAD2,SOX11"
TCGA.AA.A00N.01A	2	5834391	7003556	12	-1.8638	LARGE-LOSS	FOCAL	2	"CMPK2,SOX11"
TCGA.DC.4749	2	6641548	7272710	329	-1.4507	LARGE-LOSS	FOCAL	3	"CMPK2,RNF144A,RSAD2"
TCGA.AA.A00N.01A	2	9543323	9621367	29	-1.4436	LARGE-LOSS	FOCAL	4	"ASAP2,CPSF3,IAH1,ITGB1BP1"
TCGA.AA.A00N.01A	2	9985301	9994401	6	-1.7675	LARGE-LOSS	FOCAL	1	TAF1B
TCGA.AA.A010.01A	2	10073899	10226091	26	-2.0761	LARGE-LOSS	FOCAL	4	"CYS1,GRHL1,KLF11,TAF1B"
TCGA.A6.3808.01A	2	10223861	10595287	25	-1.9595	LARGE-LOSS	FOCAL	4	"C2orf48,HPCAL1,ODC1,RRM2"
TCGA.AG.3909.01A	2	10263823	10268933	4	-1.3487	LARGE-LOSS	FOCAL	1	RRM2
TCGA.AA.A010.01A	2	10580803	10595287	9	-2.7349	LARGE-LOSS	FOCAL	1	ODC1
TCGA.AG.3909.01A	2	10911918	10923246	7	-1.4073	LARGE-LOSS	FOCAL	1	ATP6V1C2
TCGA.AA.A017.01A	2	10937176	10942578	3	-3.4306	LARGE-LOSS	FOCAL	1	PDIA6
TCGA.AA.3941	2	14303638	14310402	11	-4.3424	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	14303715	14310402	10	-4.82375	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	14308845	14309664	3	-7.6812	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6626	2	14505126	14589558	33	-1.8404	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6704	2	14704948	14706808	4	-1.5704	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3976	2	14704948	14710091	7	-6.2907	LARGE-LOSS	FOCAL	0	None
TCGA.CA.5254	2	15185281	16478094	458	-1.4611	LARGE-LOSS	FOCAL	3	"DDX1,MYCN,NBAS"
TCGA.AA.A00N.01A	2	15735243	15763558	17	-1.8433	LARGE-LOSS	FOCAL	1	DDX1
TCGA.A6.5665	2	15772454	15782470	5	-8.2364	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3972	2	17675734	17678047	3	-4.3765	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	2	18468567	18484043	10	-1.5369	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	18736430	19551997	12	-1.8646	LARGE-LOSS	FOCAL	4	"NT5C1B,NT5C1B-RDH14,OSR1,RDH14"
TCGA.AG.3909.01A	2	18736430	19551997	12	-1.468	LARGE-LOSS	FOCAL	4	"NT5C1B,NT5C1B-RDH14,OSR1,RDH14"
TCGA.AG.4021	2	20400055	20400555	3	-1.6128	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	20479169	20481604	3	-1.51805	LARGE-LOSS	FOCAL	1	PUM2
TCGA.AA.A010.01A	2	20838139	20901270	8	-1.8073	LARGE-LOSS	FOCAL	3	"GDF7,HS1BP3,LDAH"
TCGA.AA.A010.01A	2	24338381	24362201	8	-1.7056	LARGE-LOSS	FOCAL	2	"FAM228B,PFN4"
TCGA.AA.A00O.01A	2	25047206	25050769	4	-5.3647	LARGE-LOSS	FOCAL	1	ADCY3
TCGA.AA.A010.01A	2	26399173	26426889	14	-2.8947	LARGE-LOSS	FOCAL	2	"GAREML,HADHA"
TCGA.AA.A010.01A	2	26432601	26453022	5	-1.6467	LARGE-LOSS	FOCAL	1	HADHA
TCGA.AA.A00N.01A	2	26587114	26611825	9	-2.0952	LARGE-LOSS	FOCAL	1	EPT1
TCGA.A6.3808.01A	2	26693902	26712491	19	-2.1975	LARGE-LOSS	FOCAL	1	OTOF
TCGA.AA.A00N.01A	2	27014947	27016005	3	-1.7325	LARGE-LOSS	FOCAL	1	CENPA
TCGA.AA.A010.01A	2	27317344	27354195	16	-1.6798	LARGE-LOSS	FOCAL	4	"ABHD1,CGREF1,KHK,PREB"
TCGA.AA.A00N.01A	2	27435997	27439671	4	-2.3466	LARGE-LOSS	FOCAL	1	ATRAID
TCGA.AA.A010.01A	2	27587218	27663979	46	-1.621	LARGE-LOSS	FOCAL	5	"EIF2B4,NRBP1,PPM1G,SNX17,ZNF513"
TCGA.AA.A00N.01A	2	27587218	27672815	58	-1.5244	LARGE-LOSS	FOCAL	7	"EIF2B4,IFT172,KRTCAP3,NRBP1,PPM1G,SNX17,ZNF513"
TCGA.AA.A010.01A	2	27694990	27700821	5	-1.4213	LARGE-LOSS	FOCAL	1	IFT172
TCGA.AA.A010.01A	2	27702336	27717171	15	-1.923	LARGE-LOSS	FOCAL	2	"FNDC4,IFT172"
TCGA.AF.3914.01A	2	27712410	27719711	6	-1.3249	LARGE-LOSS	FOCAL	3	"FNDC4,GCKR,IFT172"
TCGA.AA.A010.01A	2	27719711	27724516	7	-2.2818	LARGE-LOSS	FOCAL	1	GCKR
TCGA.AA.A010.01A	2	27726329	27789565	15	-1.9373	LARGE-LOSS	FOCAL	1	GCKR
TCGA.AA.A010.01A	2	28615604	28634705	5	-1.8557	LARGE-LOSS	FOCAL	1	FOSL2
TCGA.A6.5666	2	29099751	29100844	3	-6.6239	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	29344218	29375504	9	-2.4522	LARGE-LOSS	FOCAL	1	CLIP4
TCGA.AG.A02X.01A	2	29419585	29420361	2	-4.3344	LARGE-LOSS	FOCAL	1	ALK
TCGA.AA.A010.01A	2	30379468	30381433	2	-2.7851	LARGE-LOSS	FOCAL	1	YPEL5
TCGA.AG.3892	2	30974734	30974793	3	-2.3064	LARGE-LOSS	FOCAL	1	CAPN13
TCGA.AA.A010.01A	2	32235189	32254621	4	-1.7235	LARGE-LOSS	FOCAL	2	"DPY30,MEMO1"
TCGA.AA.A00N.01A	2	32481747	32532110	8	-1.536	LARGE-LOSS	FOCAL	2	"NLRC4,YIPF4"
TCGA.AA.A00N.01A	2	32666360	32690111	9	-1.3239	LARGE-LOSS	FOCAL	1	BIRC6
TCGA.EI.7002	2	34699314	34737162	3	-4.309	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	35118177	35122205	6	-2.8991	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	35118177	35123578	8	-1.5027	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	35250421	35573267	81	-1.6654	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	2	35269813	35286151	3	-1.441	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	35769921	35775595	4	-3.6932	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	35769921	35775595	4	-2.5697	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	36173246	36175699	5	-2.0308	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	36173269	36175046	3	-3.6275	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	36255355	36264998	9	-1.641	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	36286932	36304702	9	-2.5207	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	36487292	36490849	4	-3.0085	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	36805713	36817996	4	-1.8553	LARGE-LOSS	FOCAL	1	FEZ2
TCGA.AA.A00N.01A	2	37426801	37429891	4	-2.0307	LARGE-LOSS	FOCAL	1	CEBPZ
TCGA.AA.A00N.01A	2	38156383	38208356	7	-2.2532	LARGE-LOSS	FOCAL	1	RMDN2
TCGA.AG.4009.01A	2	38177580	38208356	6	-1.5806	LARGE-LOSS	FOCAL	1	RMDN2
TCGA.AA.A00N.01A	2	38216621	38297844	9	-1.515	LARGE-LOSS	FOCAL	2	"CYP1B1,RMDN2"
TCGA.AA.3850	2	38799819	38807176	7	-1.39355	LARGE-LOSS	FOCAL	1	HNRNPLL
TCGA.AA.A00N.01A	2	38968188	38977129	10	-2.0494	LARGE-LOSS	FOCAL	1	SRSF7
TCGA.AA.A017.01A	2	38975159	38978303	6	-2.3213	LARGE-LOSS	FOCAL	1	SRSF7
TCGA.AA.A010.01A	2	39148438	39164469	6	-1.7925	LARGE-LOSS	FOCAL	1	ARHGEF33
TCGA.AA.A010.01A	2	39171005	39212916	12	-2.8892	LARGE-LOSS	FOCAL	2	"ARHGEF33,SOS1"
TCGA.AA.A010.01A	2	39214564	39224377	5	-1.9408	LARGE-LOSS	FOCAL	1	SOS1
TCGA.AA.3941	2	39242150	39243128	3	-1.4049	LARGE-LOSS	FOCAL	1	SOS1
TCGA.AA.3982	2	39242150	39243128	3	-1.3666	LARGE-LOSS	FOCAL	1	SOS1
TCGA.AA.3982	2	39924740	39930424	5	-1.4635	LARGE-LOSS	FOCAL	1	TMEM178A
TCGA.AA.3844	2	39930276	39930424	3	-1.6126	LARGE-LOSS	FOCAL	1	TMEM178A
TCGA.AA.3850	2	40139249	40141032	4	-3.98125	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3574	2	40335458	40336639	3	-2.0187	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	40424443	40435469	8	-1.8546	LARGE-LOSS	FOCAL	1	SLC8A1
TCGA.AA.3867	2	40849397	40849622	3	-1.7391	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	40987848	41023328	10	-2.417	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	40991437	41004758	5	-5.8426	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	41615489	41629000	11	-2.2493	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	41616068	41628622	9	-1.8792	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	41710556	41715336	5	-4.0952	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	41714252	41715336	4	-4.6296	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	42000947	42005427	9	-1.3851	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	42280362	42396666	7	-2.4484	LARGE-LOSS	FOCAL	2	"EML4,PKDCC"
TCGA.AA.3496	2	42563285	43861550	422	-2.4713	LARGE-LOSS	FOCAL	7	"COX7A2L,HAAO,KCNG3,MTA3,OXER1,THADA,ZFP36L2"
TCGA.AA.A00N.01A	2	42797509	42836546	3	-2.0049	LARGE-LOSS	FOCAL	1	MTA3
TCGA.AA.A010.01A	2	42797509	42836546	3	-1.3733	LARGE-LOSS	FOCAL	1	MTA3
TCGA.AA.3952	2	43113205	43462821	154	-2.5867	LARGE-LOSS	FOCAL	2	"THADA,ZFP36L2"
TCGA.AA.A010.01A	2	43452389	43520021	10	-1.5846	LARGE-LOSS	FOCAL	2	"THADA,ZFP36L2"
TCGA.AG.3909.01A	2	43871791	43905962	3	-1.6213	LARGE-LOSS	FOCAL	2	"C1GALT1C1L,PLEKHH2"
TCGA.AA.A010.01A	2	46739123	46808029	6	-1.3435	LARGE-LOSS	FOCAL	2	"ATP6V1E2,RHOQ"
TCGA.AA.A010.01A	2	47357289	47403514	11	-1.65	LARGE-LOSS	FOCAL	2	"C2orf61,CALM2"
TCGA.AA.3850	2	49224579	49226240	3	-2.75195	LARGE-LOSS	FOCAL	1	FSHR
TCGA.AA.3850	2	49358553	49359675	3	-9.88765	LARGE-LOSS	FOCAL	1	FSHR
TCGA.AA.3850	2	51510143	51521624	14	-3.39635	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3866	2	52739101	52743924	3	-4.0051	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	53032545	53051472	8	-5.2347	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	53143561	53146215	3	-8.65415	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	54652286	54653008	3	-3.1251	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	55116886	55119046	3	-3.33235	LARGE-LOSS	FOCAL	1	EML6
TCGA.CL.5917	2	55324959	55327090	4	-6.1024	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	55863365	55887259	11	-1.5307	LARGE-LOSS	FOCAL	1	PNPT1
TCGA.A6.3808.01A	2	55872444	55910848	15	-2.2942	LARGE-LOSS	FOCAL	1	PNPT1
TCGA.AA.3941	2	56741750	56963553	94	-1.4801	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	2	58236541	58237723	4	-2.9317	LARGE-LOSS	FOCAL	1	VRK2
TCGA.AA.3850	2	60347731	60351131	7	-2.19255	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	2	60436965	60439115	4	-1.7565	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	60768967	60780322	3	-3	LARGE-LOSS	FOCAL	1	BCL11A
TCGA.AA.A010.01A	2	61389578	61419979	11	-1.4371	LARGE-LOSS	FOCAL	3	"AHSA2,C2orf74,USP34"
TCGA.AA.A010.01A	2	61697710	61712852	7	-2.1346	LARGE-LOSS	FOCAL	2	"USP34,XPO1"
TCGA.AA.A010.01A	2	61715258	61722548	9	-1.569	LARGE-LOSS	FOCAL	1	XPO1
TCGA.AA.A010.01A	2	61753515	61760855	2	-2.8761	LARGE-LOSS	FOCAL	1	XPO1
TCGA.F4.6806	2	63525116	63530568	3	-4.0551	LARGE-LOSS	FOCAL	1	WDPCP
TCGA.AA.A00N.01A	2	64335309	64685382	4	-1.7377	LARGE-LOSS	FOCAL	2	"LGALSL,PELI1"
TCGA.AA.3941	2	64398417	64400607	3	-1.9178	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3496	2	65010149	65015814	3	-5.0673	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	65879079	65880550	3	-1.61745	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	2	67404325	67406028	4	-1.556	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3819	2	67718218	67718659	3	-1.5254	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3972	2	68184249	68186834	3	-2.7688	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00O.01A	2	70408304	70408718	2	-3.4132	LARGE-LOSS	FOCAL	1	C2orf42
TCGA.AG.A02X.01A	2	70408304	70408718	2	-3.677	LARGE-LOSS	FOCAL	1	C2orf42
TCGA.AA.A00N.01A	2	70486445	70527923	11	-1.5039	LARGE-LOSS	FOCAL	3	"FAM136A,PCYOX1,SNRPG"
TCGA.AA.3841	2	70943628	70944015	3	-1.3756	LARGE-LOSS	FOCAL	1	ADD2
TCGA.AA.A010.01A	2	71004425	71012510	3	-2.402	LARGE-LOSS	FOCAL	1	FIGLA
TCGA.AA.A00N.01A	2	71004425	71014764	4	-2.0643	LARGE-LOSS	FOCAL	1	FIGLA
TCGA.AA.A010.01A	2	72359342	72692201	12	-1.3774	LARGE-LOSS	FOCAL	2	"CYP26B1,EXOC6B"
TCGA.AA.A00N.01A	2	73435490	73478323	31	-1.3235	LARGE-LOSS	FOCAL	4	"CCT7,NOTO,PRADC1,SMYD5"
TCGA.AA.A010.01A	2	73466729	73497901	22	-1.6205	LARGE-LOSS	FOCAL	2	"CCT7,FBXO41"
TCGA.AA.3844	2	73723958	73728032	3	-1.688	LARGE-LOSS	FOCAL	1	ALMS1
TCGA.AA.3850	2	73723958	73730173	4	-2.13195	LARGE-LOSS	FOCAL	1	ALMS1
TCGA.AA.A00N.01A	2	74362602	74441159	17	-1.4344	LARGE-LOSS	FOCAL	3	"BOLA3,MOB1A,MTHFD2"
TCGA.AG.3909.01A	2	74649234	74655346	10	-1.836	LARGE-LOSS	FOCAL	2	"RTKN,WDR54"
TCGA.AG.A02X.01A	2	74656903	74659596	3	-2.1303	LARGE-LOSS	FOCAL	1	RTKN
TCGA.AA.A029.01A	2	74745565	74746995	4	-4.8764	LARGE-LOSS	FOCAL	1	DQX1
TCGA.AG.3909.01A	2	74757695	74760964	7	-1.7488	LARGE-LOSS	FOCAL	2	"HTRA2,LOXL3"
TCGA.AA.A00N.01A	2	74882324	74889815	5	-1.6544	LARGE-LOSS	FOCAL	1	SEMA4F
TCGA.G4.6294	2	75449128	75517909	25	-3.3403	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	75879258	75882183	4	-1.345	LARGE-LOSS	FOCAL	1	MRPL19
TCGA.AA.A00N.01A	2	75917708	75933607	7	-1.357	LARGE-LOSS	FOCAL	1	GCFC2
TCGA.EI.7002	2	76555110	76555417	3	-3.861	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6626	2	77621372	77673918	18	-1.4788	LARGE-LOSS	FOCAL	1	LRRTM4
TCGA.AA.3867	2	77730224	77732665	4	-1.4322	LARGE-LOSS	FOCAL	1	LRRTM4
TCGA.G4.6626	2	77857458	78174776	78	-1.3942	LARGE-LOSS	FOCAL	0	None
TCGA.QL.A97D	2	78089188	78256828	46	-2.2813	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	80529345	80555363	3	-1.4357	LARGE-LOSS	FOCAL	2	"CTNNA2,LRRTM1"
TCGA.AA.A010.01A	2	80529345	80555363	3	-2.2113	LARGE-LOSS	FOCAL	2	"CTNNA2,LRRTM1"
TCGA.AA.3972	2	81031959	81049407	3	-2.5558	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6881	2	81032436	81060703	3	-3.7455	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	84458195	84460027	3	-2.21895	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00O.01A	2	85133131	85133492	2	-4.7815	LARGE-LOSS	FOCAL	1	TMSB10
TCGA.AA.A00N.01A	2	85768148	85770745	6	-2.1847	LARGE-LOSS	FOCAL	1	MAT2A
TCGA.AA.A02W.01A	2	85826162	85828963	5	-3.9578	LARGE-LOSS	FOCAL	1	TMEM150A
TCGA.AG.A032.01A	2	85836040	85836506	2	-3.8764	LARGE-LOSS	FOCAL	1	C2orf68
TCGA.AA.A02W.01A	2	86257302	86259348	3	-5.575	LARGE-LOSS	FOCAL	1	POLR1A
TCGA.AA.A010.01A	2	86669123	86697280	9	-1.8913	LARGE-LOSS	FOCAL	1	KDM3A
TCGA.AA.A00N.01A	2	86676880	86697280	8	-1.4496	LARGE-LOSS	FOCAL	1	KDM3A
TCGA.A6.3808.01A	2	87069343	88082440	15	-2.5076	LARGE-LOSS	FOCAL	5	"CD8B,PLGLB1,PLGLB2,RGPD1,RGPD2"
TCGA.AA.3558	2	87396813	87767192	5	-7.1206	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3558	2	87949634	88295963	4	-2.0172	LARGE-LOSS	FOCAL	4	"PLGLB1,PLGLB2,RGPD1,RGPD2"
TCGA.AA.A010.01A	2	88472633	88751413	9	-1.9951	LARGE-LOSS	FOCAL	2	"FOXI3,THNSL2"
TCGA.AG.A015.01A	2	89156827	89161340	6	-1.6778	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A016.01A	2	89156827	89277940	14	-1.6039	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A02X.01A	2	89160022	89161340	5	-3.5755	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	2	89160340	89161340	4	-2.8859	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	2	89246782	95541281	68	-1.9226	LARGE-LOSS	FOCAL	1	TEKT4
TCGA.AG.A02X.01A	2	89512869	89513257	2	-3.7948	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	90242075	92285929	10	-2.8314	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	90262897	91627977	3	-4.2467	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	91618894	92285929	8	-3.02625	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6926	2	91627977	91849289	4	-3.2844	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	95814975	95846807	8	-2.3344	LARGE-LOSS	FOCAL	2	"ZNF2,ZNF514"
TCGA.A6.3808.01A	2	96078174	96781493	17	-2.3311	LARGE-LOSS	FOCAL	5	"ADRA2B,FAHD2A,GPAT2,TRIM43,TRIM43B"
TCGA.AA.A010.01A	2	96795535	96809915	9	-1.5451	LARGE-LOSS	FOCAL	2	"ASTL,DUSP2"
TCGA.AA.A024.01A	2	96933336	96934148	2	-3.3177	LARGE-LOSS	FOCAL	1	CIAO1
TCGA.AA.A02F.01A	2	97367646	97367999	2	-7.3882	LARGE-LOSS	FOCAL	1	FER1L5
TCGA.AA.A010.01A	2	97405564	97520026	28	-1.5115	LARGE-LOSS	FOCAL	5	"ANKRD23,ANKRD39,CNNM3,CNNM4,LMAN2L"
TCGA.A6.3808.01A	2	97779440	98205951	12	-2.8595	LARGE-LOSS	FOCAL	2	"ANKRD36,ANKRD36B"
TCGA.AA.A010.01A	2	98263490	98280231	12	-1.3595	LARGE-LOSS	FOCAL	2	"ACTR1B,COX5B"
TCGA.AA.A010.01A	2	100185265	100217857	7	-1.8357	LARGE-LOSS	FOCAL	1	AFF3
TCGA.AA.A01K.01A	2	101580482	101582075	3	-5.5755	LARGE-LOSS	FOCAL	1	NPAS2
TCGA.AA.A01K.01A	2	101584704	101607187	9	-1.4443	LARGE-LOSS	FOCAL	1	NPAS2
TCGA.AG.3909.01A	2	103340132	103348481	4	-1.3356	LARGE-LOSS	FOCAL	1	MFSD9
TCGA.AA.3811	2	103596059	103598168	3	-4.4967	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	2	106782457	107073440	14	-2.5713	LARGE-LOSS	FOCAL	2	"RGPD3,UXS1"
TCGA.AA.3811	2	107766205	107769968	3	-4.0837	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	2	108470999	108507151	12	-3.1648	LARGE-LOSS	FOCAL	1	RGPD4
TCGA.AA.A02F.01A	2	108999532	108999820	2	-4.6659	LARGE-LOSS	FOCAL	1	SULT1C4
TCGA.A6.3808.01A	2	109092004	109384553	39	-2.1975	LARGE-LOSS	FOCAL	3	"GCC2,LIMS1,RANBP2"
TCGA.EI.7004	2	109095635	109118226	3	-1.3898	LARGE-LOSS	FOCAL	1	GCC2
TCGA.AA.A02E.01A	2	109397687	109398936	3	-3.7244	LARGE-LOSS	FOCAL	1	RANBP2
TCGA.AA.A010.01A	2	111850395	111911275	10	-1.9712	LARGE-LOSS	FOCAL	2	"ACOXL,BCL2L11"
TCGA.AA.3558	2	112142904	112310840	15	-2.0421	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	2	112524467	112638143	38	-2.7149	LARGE-LOSS	FOCAL	1	ANAPC1
TCGA.AA.A00N.01A	2	112625554	112638143	7	-1.5768	LARGE-LOSS	FOCAL	1	ANAPC1
TCGA.A6.3808.01A	2	113057378	113260449	20	-1.5142	LARGE-LOSS	FOCAL	4	"RGPD5,RGPD8,TTL,ZC3H6"
TCGA.AA.A010.01A	2	113239885	113260449	5	-2.2208	LARGE-LOSS	FOCAL	1	TTL
TCGA.AA.A00N.01A	2	113404355	113410241	4	-2.1341	LARGE-LOSS	FOCAL	1	SLC20A1
TCGA.A6.3808.01A	2	114195405	114399568	21	-1.9314	LARGE-LOSS	FOCAL	3	"CBWD2,FOXD4L1,RABL2A"
TCGA.AA.A00N.01A	2	114258335	114387683	4	-2.2883	LARGE-LOSS	FOCAL	2	"FOXD4L1,RABL2A"
TCGA.AA.3712	2	114276299	114313312	3	-6.5705	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6888	2	114276299	114313312	3	-4.1576	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5349	2	114276299	114313312	3	-1.9958	LARGE-LOSS	FOCAL	0	None
TCGA.AF.5654	2	114276299	114325088	4	-1.4509	LARGE-LOSS	FOCAL	0	None
TCGA.CI.6624	2	114276299	114325088	4	-1.9044	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6885	2	114276299	114325088	4	-1.5304	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6303	2	114276299	114325088	4	-1.5703	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6514	2	114311512	114325088	3	-1.379	LARGE-LOSS	FOCAL	0	None
TCGA.AH.6897	2	114313312	114327182	3	-2.2691	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	114340485	114390407	4	-1.3534	LARGE-LOSS	FOCAL	1	RABL2A
TCGA.AA.A00N.01A	2	114507954	114513396	3	-2.0126	LARGE-LOSS	FOCAL	1	SLC35F5
TCGA.D5.6539	2	118474816	118475070	3	-3.8442	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	120125445	120187869	6	-1.4712	LARGE-LOSS	FOCAL	1	DBI
TCGA.AA.A010.01A	2	121726243	121746122	10	-1.8309	LARGE-LOSS	FOCAL	1	GLI2
TCGA.AA.A00N.01A	2	122484940	124783178	16	-1.5694	LARGE-LOSS	FOCAL	3	"CNTNAP5,NIFK,TSN"
TCGA.CM.5349	2	122574850	122576786	3	-6.8325	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6157	2	125654525	125658361	3	-2.2379	LARGE-LOSS	FOCAL	1	CNTNAP5
TCGA.AA.3861.01A	2	127815022	127826453	8	-2.0391	LARGE-LOSS	FOCAL	1	BIN1
TCGA.AA.A00N.01A	2	128046224	128050134	4	-1.4893	LARGE-LOSS	FOCAL	1	ERCC3
TCGA.A6.3808.01A	2	128339428	128431194	47	-1.5669	LARGE-LOSS	FOCAL	3	"GPR17,LIMS2,MYO7B"
TCGA.AA.A00N.01A	2	128460491	128462665	4	-2.3932	LARGE-LOSS	FOCAL	2	"SFT2D3,WDR33"
TCGA.AA.A010.01A	2	128460491	128467012	7	-1.9061	LARGE-LOSS	FOCAL	2	"SFT2D3,WDR33"
TCGA.AG.3909.01A	2	128460491	128467012	4	-1.335	LARGE-LOSS	FOCAL	2	"SFT2D3,WDR33"
TCGA.AA.A02J.01A	2	128480499	128480788	2	-7.1873	LARGE-LOSS	FOCAL	1	WDR33
TCGA.AA.A017.01A	2	128699533	128699967	2	-5.2669	LARGE-LOSS	FOCAL	1	SAP130
TCGA.AA.A02F.01A	2	128757264	128757589	2	-4.9414	LARGE-LOSS	FOCAL	1	SAP130
TCGA.A6.3808.01A	2	128945005	130955831	44	-2.3504	LARGE-LOSS	FOCAL	8	"CCDC74B,HS6ST1,MZT2B,POTEF,RAB6C,SMPD4,TUBA3E,UGGT1"
TCGA.AA.3818	2	129277812	129278455	3	-1.8569	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	2	129888876	129889524	3	-4.2453	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	129888876	129893555	9	-1.5797	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	129889396	129893194	7	-1.45805	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3583	2	130197147	130199081	3	-3.973	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3727	2	130460114	130469907	3	-1.4281	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A8F7	2	130550250	130552184	3	-2.5598	LARGE-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	2	130559940	130586031	3	-3.7594	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	131258088	131840128	37	-1.498	LARGE-LOSS	FOCAL	8	"AMER3,ARHGEF4,CFC1,CFC1B,FAM168B,GPR148,POTEI,POTEJ"
TCGA.DM.A28M.01A	2	131334196	131403262	6	-1.5019	LARGE-LOSS	FOCAL	3	"CFC1,CFC1B,POTEJ"
TCGA.AA.3693	2	131629631	131633866	6	-3.4061	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	132233674	132248234	8	-1.6208	LARGE-LOSS	FOCAL	2	"MZT2A,TUBA3D"
TCGA.A6.6782	2	133645892	133647162	3	-1.8934	LARGE-LOSS	FOCAL	1	NCKAP5
TCGA.AA.A00N.01A	2	136023065	136033159	5	-1.3812	LARGE-LOSS	FOCAL	1	ZRANB3
TCGA.AA.A010.01A	2	136023065	136033159	5	-1.4806	LARGE-LOSS	FOCAL	1	ZRANB3
TCGA.AA.A00N.01A	2	136872422	136875547	3	-1.8694	LARGE-LOSS	FOCAL	1	CXCR4
TCGA.DM.A1HA	2	137983758	137984260	3	-10.0188	LARGE-LOSS	FOCAL	1	THSD7B
TCGA.AA.3982	2	140666321	140666954	3	-7.0377	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	2	141312172	141312830	3	-7.3926	LARGE-LOSS	FOCAL	1	LRP1B
TCGA.AA.3811	2	141875274	141882058	3	-6.2144	LARGE-LOSS	FOCAL	1	LRP1B
TCGA.AA.3543	2	143391865	143512950	18	-1.7948	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	145188055	148602659	4	-1.7133	LARGE-LOSS	FOCAL	2	"ACVR2A,ZEB2"
TCGA.AA.3681	2	145599193	145603305	3	-4.2769	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	2	148337016	148337411	3	-1.3718	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6676	2	150742466	150755191	3	-4.1625	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	150867766	150887507	9	-1.95275	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	150903120	150909114	5	-2.04735	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	2	151749944	151752328	3	-2.6387	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	152107368	152139346	11	-1.3976	LARGE-LOSS	FOCAL	2	"NMI,RBM43"
TCGA.AA.3989	2	155604982	155607147	3	-4.1362	LARGE-LOSS	FOCAL	1	KCNJ3
TCGA.AA.3867	2	155607147	155615722	3	-3.9481	LARGE-LOSS	FOCAL	1	KCNJ3
TCGA.AA.3867	2	156766218	156768709	3	-1.3387	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	157182249	157185788	6	-1.5718	LARGE-LOSS	FOCAL	1	NR4A2
TCGA.AG.3909.01A	2	157182249	157185788	6	-1.3919	LARGE-LOSS	FOCAL	1	NR4A2
TCGA.AG.3893	2	158820859	158832822	3	-3.8817	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	2	159032986	159165913	5	-1.343	LARGE-LOSS	FOCAL	1	CCDC148
TCGA.AA.3941	2	159044633	159047917	3	-7.8243	LARGE-LOSS	FOCAL	1	CCDC148
TCGA.AA.A00N.01A	2	160128162	160139136	4	-1.4943	LARGE-LOSS	FOCAL	1	WDSUB1
TCGA.EI.6508	2	160669891	160672364	3	-1.3822	LARGE-LOSS	FOCAL	2	"LY75,LY75-CD302"
TCGA.AA.A00N.01A	2	162076167	162091801	6	-1.5867	LARGE-LOSS	FOCAL	1	TANK
TCGA.AA.A010.01A	2	162076167	162091801	6	-2.2273	LARGE-LOSS	FOCAL	1	TANK
TCGA.AA.A00N.01A	2	162247565	162276641	9	-1.9809	LARGE-LOSS	FOCAL	2	"PSMD14,TBR1"
TCGA.AG.3909.01A	2	162265278	162279858	8	-1.3324	LARGE-LOSS	FOCAL	2	"PSMD14,TBR1"
TCGA.AA.3844	2	163137180	163148071	3	-5.786	LARGE-LOSS	FOCAL	1	IFIH1
TCGA.AH.6643	2	164643587	164645125	3	-6.0161	LARGE-LOSS	FOCAL	0	None
TCGA.QL.A97D	2	169277486	169295876	12	-3.2084	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	169784412	169847543	43	-1.67735	LARGE-LOSS	FOCAL	1	ABCB11
TCGA.AA.3850	2	170112097	170122271	8	-1.61245	LARGE-LOSS	FOCAL	1	LRP2
TCGA.AA.A00N.01A	2	170175235	170374703	16	-1.6053	LARGE-LOSS	FOCAL	3	"BBS5,KLHL41,LRP2"
TCGA.AA.A00N.01A	2	170416845	170428115	4	-1.4576	LARGE-LOSS	FOCAL	1	FASTKD1
TCGA.AA.A00N.01A	2	170557495	170680967	20	-1.9683	LARGE-LOSS	FOCAL	5	"KLHL23,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,SSB"
TCGA.AA.A010.01A	2	170591473	170680967	19	-2.2159	LARGE-LOSS	FOCAL	4	"KLHL23,METTL5,PHOSPHO2-KLHL23,SSB"
TCGA.AA.A00N.01A	2	171793037	171818115	8	-1.4838	LARGE-LOSS	FOCAL	1	GORASP2
TCGA.AA.A00N.01A	2	172712292	172749641	3	-1.9636	LARGE-LOSS	FOCAL	1	SLC25A12
TCGA.AA.A00N.01A	2	173423389	173433417	8	-1.7011	LARGE-LOSS	FOCAL	1	PDK1
TCGA.AA.A010.01A	2	174819553	174820344	2	-2.8661	LARGE-LOSS	FOCAL	1	SP3
TCGA.AA.3941	2	174941599	174944668	3	-4.0604	LARGE-LOSS	FOCAL	1	OLA1
TCGA.AA.3982	2	174941599	174944668	3	-2.5141	LARGE-LOSS	FOCAL	1	OLA1
TCGA.AA.A010.01A	2	175199735	175216300	5	-2.5617	LARGE-LOSS	FOCAL	2	"CIR1,SP9"
TCGA.AA.A010.01A	2	176944788	177014985	18	-2.2521	LARGE-LOSS	FOCAL	7	"EVX2,HOXD10,HOXD11,HOXD12,HOXD13,HOXD8,HOXD9"
TCGA.AG.4009.01A	2	176948027	177054599	20	-1.4107	LARGE-LOSS	FOCAL	10	"EVX2,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9"
TCGA.AG.3909.01A	2	176973587	177135046	15	-1.3493	LARGE-LOSS	FOCAL	8	"HOXD1,HOXD10,HOXD11,HOXD3,HOXD4,HOXD8,HOXD9,MTX2"
TCGA.AA.3982	2	177409710	177415569	7	-1.4217	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	177568226	177569250	3	-1.8618	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	178080219	178083713	5	-2.0312	LARGE-LOSS	FOCAL	1	HNRNPA3
TCGA.AG.3909.01A	2	178080219	178083713	5	-1.4174	LARGE-LOSS	FOCAL	1	HNRNPA3
TCGA.AA.A00N.01A	2	178681503	178704937	4	-1.3492	LARGE-LOSS	FOCAL	1	PDE11A
TCGA.AA.A00O.01A	2	179399158	179403287	6	-3.5523	LARGE-LOSS	FOCAL	1	TTN
TCGA.AA.A017.01A	2	179500178	179502025	4	-1.9463	LARGE-LOSS	FOCAL	1	TTN
TCGA.AG.A00H.01A	2	179500642	179502025	3	-4.2385	LARGE-LOSS	FOCAL	1	TTN
TCGA.AA.A01K.01A	2	179592301	179600199	14	-1.5818	LARGE-LOSS	FOCAL	1	TTN
TCGA.AA.A017.01A	2	179654040	179659657	7	-2.2226	LARGE-LOSS	FOCAL	1	TTN
TCGA.AA.A010.01A	2	181846739	181854556	4	-2.9096	LARGE-LOSS	FOCAL	1	UBE2E3
TCGA.AA.A010.01A	2	182756744	182779894	11	-1.798	LARGE-LOSS	FOCAL	1	SSFA2
TCGA.AA.A00N.01A	2	182760713	182766471	5	-1.7272	LARGE-LOSS	FOCAL	1	SSFA2
TCGA.AA.A00N.01A	2	183582782	183595739	7	-1.4351	LARGE-LOSS	FOCAL	1	DNAJC10
TCGA.AA.3850	2	185115368	185171056	11	-3.44635	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	2	185157848	185163754	3	-7.3444	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	185199471	185210744	5	-3.23915	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	185369552	185376514	8	-6.04585	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	185369552	185376514	8	-6.0429	LARGE-LOSS	FOCAL	0	None
TCGA.AH.6643	2	186780159	187549353	159	-2.8144	LARGE-LOSS	FOCAL	2	"ITGAV,ZC3H15"
TCGA.AG.4015	2	186797056	186807392	3	-1.749	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3544	2	187352288	187492741	33	-3.7431	LARGE-LOSS	FOCAL	2	"ITGAV,ZC3H15"
TCGA.AA.3529	2	187388233	187478447	23	-1.7644	LARGE-LOSS	FOCAL	1	ITGAV
TCGA.AA.A01D.01A	2	189856184	189859722	7	-4.6442	LARGE-LOSS	FOCAL	1	COL3A1
TCGA.AA.A00N.01A	2	190426612	190541378	14	-1.3738	LARGE-LOSS	FOCAL	3	"ANKAR,ASNSD1,SLC40A1"
TCGA.AA.A00N.01A	2	190611065	190682725	14	-1.5045	LARGE-LOSS	FOCAL	4	"ANKAR,ORMDL1,OSGEPL1,PMS1"
TCGA.AA.A00N.01A	2	191872252	191896118	7	-1.8695	LARGE-LOSS	FOCAL	2	"STAT1,STAT4"
TCGA.AA.A02E.01A	2	191898169	191900850	4	-1.5976	LARGE-LOSS	FOCAL	1	STAT4
TCGA.AA.3850	2	192074202	192077436	3	-7.33485	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	192246147	192275743	14	-1.4725	LARGE-LOSS	FOCAL	1	MYO1B
TCGA.AA.3850	2	192525535	192527910	3	-7.15355	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	2	192527802	192529394	3	-6.8187	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	192543316	192550275	7	-1.838	LARGE-LOSS	FOCAL	1	NABP1
TCGA.EI.7002	2	193220638	193221040	3	-2.7816	LARGE-LOSS	FOCAL	0	None
TCGA.EI.7002	2	195365474	195366083	3	-4.6483	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	197021123	197027939	2	-2.6864	LARGE-LOSS	FOCAL	1	STK17B
TCGA.AG.A01J.01A	2	197171160	197172620	3	-2.3637	LARGE-LOSS	FOCAL	1	HECW2
TCGA.AA.A00N.01A	2	197761787	197792225	9	-1.4799	LARGE-LOSS	FOCAL	1	PGAP1
TCGA.A6.3808.01A	2	198324609	198365751	17	-2.8847	LARGE-LOSS	FOCAL	4	"COQ10B,HSPD1,HSPE1,HSPE1-MOB4"
TCGA.DM.A1HB	2	200011500	200012396	3	-2.282	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A50U	2	200179821	200185914	3	-1.7629	LARGE-LOSS	FOCAL	1	SATB2
TCGA.AG.A01N.01A	2	200820105	200824449	4	-2.304	LARGE-LOSS	FOCAL	2	"C2orf47,TYW5"
TCGA.AA.A010.01A	2	201170974	201194079	3	-2.5441	LARGE-LOSS	FOCAL	1	SPATS2L
TCGA.AA.A00N.01A	2	201357863	201371533	5	-1.811	LARGE-LOSS	FOCAL	1	KCTD18
TCGA.AA.3982	2	201437213	201439279	3	-1.5588	LARGE-LOSS	FOCAL	1	SGOL2
TCGA.AA.A00N.01A	2	201677422	201741590	25	-1.7365	LARGE-LOSS	FOCAL	3	"BZW1,CLK1,PPIL3"
TCGA.AA.A010.01A	2	201994540	202025168	9	-2.5625	LARGE-LOSS	FOCAL	1	CFLAR
TCGA.AA.A00N.01A	2	201994540	202028509	10	-1.9369	LARGE-LOSS	FOCAL	1	CFLAR
TCGA.AA.3982	2	202398131	202402531	5	-1.4774	LARGE-LOSS	FOCAL	1	ALS2CR11
TCGA.AA.A00N.01A	2	202488915	202519519	20	-1.5378	LARGE-LOSS	FOCAL	2	"MPP4,TMEM237"
TCGA.A6.6653	2	203419283	203649631	27	-2.5924	LARGE-LOSS	FOCAL	3	"BMPR2,FAM117B,ICA1L"
TCGA.AA.A00N.01A	2	204058481	204116679	14	-1.4827	LARGE-LOSS	FOCAL	2	"CYP20A1,NBEAL1"
TCGA.AA.3811	2	205557746	205563586	5	-3.9237	LARGE-LOSS	FOCAL	1	PARD3B
TCGA.AA.3941	2	205557746	205563586	5	-5.2739	LARGE-LOSS	FOCAL	1	PARD3B
TCGA.AA.3982	2	205557746	205563586	5	-3.8467	LARGE-LOSS	FOCAL	1	PARD3B
TCGA.EI.6512	2	206115787	206116020	3	-5.4327	LARGE-LOSS	FOCAL	1	PARD3B
TCGA.A6.3808.01A	2	207014503	207027185	8	-2.916	LARGE-LOSS	FOCAL	2	"EEF1B2,NDUFS1"
TCGA.AG.3909.01A	2	207025270	207040864	6	-1.4016	LARGE-LOSS	FOCAL	2	"EEF1B2,GPR1"
TCGA.AA.A00N.01A	2	207025270	207146507	7	-2.2872	LARGE-LOSS	FOCAL	3	"EEF1B2,GPR1,ZDBF2"
TCGA.AA.A02J.01A	2	207026784	207027405	3	-4.4111	LARGE-LOSS	FOCAL	1	EEF1B2
TCGA.AA.A010.01A	2	207146507	207345908	10	-1.4726	LARGE-LOSS	FOCAL	2	"ADAM23,ZDBF2"
TCGA.AA.A010.01A	2	208576589	208618275	10	-1.5253	LARGE-LOSS	FOCAL	1	CCNYL1
TCGA.AA.A00N.01A	2	209101757	209150428	14	-1.5351	LARGE-LOSS	FOCAL	2	"IDH1,PIKFYVE"
TCGA.AA.A02J.01A	2	209188814	209189977	3	-4.9281	LARGE-LOSS	FOCAL	1	PIKFYVE
TCGA.AA.A00N.01A	2	209210752	209219867	9	-1.649	LARGE-LOSS	FOCAL	1	PIKFYVE
TCGA.AA.A00N.01A	2	210637741	210642020	3	-1.8042	LARGE-LOSS	FOCAL	1	UNC80
TCGA.AA.A010.01A	2	210637741	210654216	5	-1.6071	LARGE-LOSS	FOCAL	1	UNC80
TCGA.AG.A023.01A	2	210681583	210860023	10	-1.4059	LARGE-LOSS	FOCAL	1	UNC80
TCGA.AA.A010.01A	2	211018181	211074856	9	-1.7929	LARGE-LOSS	FOCAL	2	"ACADL,KANSL1L"
TCGA.AA.3864	2	211874949	211875146	3	-3.336	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	213076112	213192231	53	-1.84105	LARGE-LOSS	FOCAL	1	ERBB4
TCGA.AA.3941	2	213164465	213181314	13	-3.54	LARGE-LOSS	FOCAL	1	ERBB4
TCGA.A6.4107	2	213187202	213190034	6	-1.4374	LARGE-LOSS	FOCAL	1	ERBB4
TCGA.DY.A1DF	2	213639759	213723159	26	-1.6648	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	214012400	214014828	3	-1.8488	LARGE-LOSS	FOCAL	1	IKZF2
TCGA.AA.A010.01A	2	214012400	214014828	3	-2.75	LARGE-LOSS	FOCAL	1	IKZF2
TCGA.AA.3864	2	215040926	215044234	3	-4.5732	LARGE-LOSS	FOCAL	1	SPAG16
TCGA.AA.3864	2	216353124	216356821	3	-1.3457	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02J.01A	2	217332630	217339942	2	-4.8769	LARGE-LOSS	FOCAL	1	SMARCAL1
TCGA.AA.A00N.01A	2	217363946	217365999	3	-1.9586	LARGE-LOSS	FOCAL	1	RPL37A
TCGA.AD.6901	2	217473913	217475198	3	-1.5186	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A029.01A	2	219130063	219134083	6	-5.571	LARGE-LOSS	FOCAL	1	AAMP
TCGA.AA.A00O.01A	2	219543850	219545275	4	-3.559	LARGE-LOSS	FOCAL	1	STK36
TCGA.AA.A02J.01A	2	219678706	219679062	2	-6.3498	LARGE-LOSS	FOCAL	1	CYP27A1
TCGA.AA.A010.01A	2	219825311	219856776	9	-1.8136	LARGE-LOSS	FOCAL	3	"CDK5R2,CRYBA2,FEV"
TCGA.A6.3808.01A	2	219868647	219875230	8	-3.5889	LARGE-LOSS	FOCAL	1	CCDC108
TCGA.A6.3808.01A	2	219877971	219892176	11	-1.4718	LARGE-LOSS	FOCAL	1	CCDC108
TCGA.AA.A010.01A	2	219905162	219942767	8	-1.949	LARGE-LOSS	FOCAL	3	"CCDC108,IHH,NHEJ1"
TCGA.A6.3808.01A	2	220071995	220118478	61	-1.526	LARGE-LOSS	FOCAL	7	"ABCB6,ANKZF1,ATG9A,GLB1L,STK16,TUBA4A,ZFAND2B"
TCGA.AA.A00O.01A	2	220077061	220078819	4	-3.5437	LARGE-LOSS	FOCAL	1	ABCB6
TCGA.AG.A02X.01A	2	220077659	220079064	4	-2.5099	LARGE-LOSS	FOCAL	1	ABCB6
TCGA.AA.A02H.01A	2	220096633	220104301	15	-2.3119	LARGE-LOSS	FOCAL	2	"ANKZF1,GLB1L"
TCGA.AG.A00H.01A	2	220096955	220101027	8	-2.0389	LARGE-LOSS	FOCAL	1	ANKZF1
TCGA.AG.A00H.01A	2	220101777	220104862	7	-1.5517	LARGE-LOSS	FOCAL	1	GLB1L
TCGA.AF.3914.01A	2	220288429	220312649	8	-1.3918	LARGE-LOSS	FOCAL	2	"DES,SPEG"
TCGA.AA.A010.01A	2	220465908	220478455	14	-1.3554	LARGE-LOSS	FOCAL	1	STK11IP
TCGA.A6.3808.01A	2	220472732	220493909	14	-1.7526	LARGE-LOSS	FOCAL	2	"SLC4A3,STK11IP"
TCGA.AA.A010.01A	2	220478852	220506315	27	-2.0546	LARGE-LOSS	FOCAL	2	"SLC4A3,STK11IP"
TCGA.AF.3911	2	224069499	224070607	3	-1.629	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	225422329	225449617	4	-1.6233	LARGE-LOSS	FOCAL	1	CUL3
TCGA.AA.A02E.01A	2	225651691	225651945	2	-3.9078	LARGE-LOSS	FOCAL	1	DOCK10
TCGA.QL.A97D	2	226956762	226958403	6	-3.9385	LARGE-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	2	227659718	227663084	3	-1.5874	LARGE-LOSS	FOCAL	1	IRS1
TCGA.AA.A01C.01A	2	227973217	227973890	3	-1.6727	LARGE-LOSS	FOCAL	1	COL4A4
TCGA.AA.A00N.01A	2	228173584	228204966	7	-1.5315	LARGE-LOSS	FOCAL	2	"COL4A3,MFF"
TCGA.AA.A010.01A	2	230096615	230135644	3	-1.9785	LARGE-LOSS	FOCAL	1	PID1
TCGA.DM.A28M.01A	2	231265623	231266328	3	-1.3648	LARGE-LOSS	FOCAL	1	SP140L
TCGA.AA.A00N.01A	2	231925912	231940159	7	-1.5741	LARGE-LOSS	FOCAL	1	PSMD1
TCGA.A6.3808.01A	2	233164723	233398673	46	-1.4422	LARGE-LOSS	FOCAL	7	"ALPI,ALPP,ALPPL2,CHRND,DIS3L2,ECEL1,PRSS56"
TCGA.AF.3914.01A	2	233271540	233272930	5	-1.8665	LARGE-LOSS	FOCAL	1	ALPPL2
TCGA.AA.A010.01A	2	233344811	233350587	11	-2.3298	LARGE-LOSS	FOCAL	1	ECEL1
TCGA.AA.A00N.01A	2	233412913	233431529	10	-1.5064	LARGE-LOSS	FOCAL	2	"EIF4E2,TIGD1"
TCGA.AA.A010.01A	2	233746839	233791707	11	-1.3474	LARGE-LOSS	FOCAL	1	NGEF
TCGA.AA.A010.01A	2	234243556	234255424	6	-2.0749	LARGE-LOSS	FOCAL	1	SAG
TCGA.AA.A01C.01A	2	234255007	234255424	2	-4.1834	LARGE-LOSS	FOCAL	1	SAG
TCGA.AG.3909.01A	2	234359518	234365840	5	-1.7881	LARGE-LOSS	FOCAL	1	DGKD
TCGA.AG.A025.01A	2	234372783	234377020	3	-5.5456	LARGE-LOSS	FOCAL	1	DGKD
TCGA.AA.A01C.01A	2	234394128	234396828	4	-2.2237	LARGE-LOSS	FOCAL	1	USP40
TCGA.AA.3941	2	234949982	234954768	6	-1.4935	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	2	234953977	234954768	4	-1.8998	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	2	234954618	234963082	3	-2.1723	LARGE-LOSS	FOCAL	1	SPP2
TCGA.AA.A010.01A	2	237074506	237185955	11	-1.5314	LARGE-LOSS	FOCAL	2	"ASB18,GBX2"
TCGA.DM.A1D7	2	237333749	237344669	3	-1.6962	LARGE-LOSS	FOCAL	1	IQCA1
TCGA.EI.6917	2	237535462	237545100	3	-4.7542	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6460	2	237545100	237545511	3	-4.4341	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	2	238024407	238025789	3	-1.88975	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	2	238024407	238025789	3	-1.3663	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3818	2	238158435	238166146	4	-1.5745	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56K	2	238398164	238398267	3	-1.7672	LARGE-LOSS	FOCAL	1	MLPH
TCGA.AA.3543	2	238655362	238669882	13	-3.5043	LARGE-LOSS	FOCAL	1	LRRFIP1
TCGA.AA.A010.01A	2	238722190	238903321	20	-1.8053	LARGE-LOSS	FOCAL	3	"RAMP1,RBM44,UBE2F"
TCGA.AA.A010.01A	2	239051398	239246952	58	-1.7169	LARGE-LOSS	FOCAL	6	"FAM132B,HES6,ILKAP,KLHL30,PER2,TRAF3IP1"
TCGA.AG.4009.01A	2	239102868	239140935	4	-1.4402	LARGE-LOSS	FOCAL	1	ILKAP
TCGA.AA.3662	2	240667497	240675092	3	-4.2918	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3818	2	240667497	240675092	3	-2.2176	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	241375319	241418953	16	-1.8451	LARGE-LOSS	FOCAL	2	"ANKMY1,GPC1"
TCGA.AA.A010.01A	2	241471471	241516979	13	-2.1016	LARGE-LOSS	FOCAL	3	"ANKMY1,DUSP28,RNPEPL1"
TCGA.AA.A010.01A	2	241922265	241938213	6	-1.9057	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	242026748	242040602	11	-1.6845	LARGE-LOSS	FOCAL	2	"MTERF4,SNED1"
TCGA.AA.A00N.01A	2	242090828	242102653	7	-1.4132	LARGE-LOSS	FOCAL	1	PPP1R7
TCGA.AG.3909.01A	2	242097148	242102653	5	-1.7104	LARGE-LOSS	FOCAL	1	PPP1R7
TCGA.AA.A010.01A	2	242135111	242142728	6	-1.4021	LARGE-LOSS	FOCAL	1	ANO7
TCGA.AA.A010.01A	2	242144235	242173183	16	-2.1711	LARGE-LOSS	FOCAL	2	"ANO7,HDLBP"
TCGA.AA.A010.01A	2	242174498	242289480	32	-1.3512	LARGE-LOSS	FOCAL	2	"HDLBP,SEPT2"
TCGA.AA.A02J.01A	2	242282358	242283128	2	-5.4426	LARGE-LOSS	FOCAL	1	2-Sep
TCGA.AF.3914.01A	2	242432297	242432680	2	-1.9102	LARGE-LOSS	FOCAL	1	FARP2
TCGA.AA.A00N.01A	2	242617815	242664346	10	-1.8787	LARGE-LOSS	FOCAL	2	"DTYMK,ING5"
TCGA.AA.A010.01A	2	242644024	242664346	6	-2.9777	LARGE-LOSS	FOCAL	1	ING5
TCGA.G4.6302	2	242718443	243048759	4	-3.235	LARGE-LOSS	FOCAL	4	"GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AA.A010.01A	2	242839310	242842428	3	-2.4671	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	3	453538	454463	3	-7.3208	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	3	718312	723754	11	-4.6041	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	718479	723754	10	-6.36545	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3688	3	857457	858547	3	-5.7926	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6163	3	857457	858547	3	-2.98	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A02N	3	956838	958599	4	-2.0065	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	1164308	1172473	10	-2.31765	LARGE-LOSS	FOCAL	1	CNTN6
TCGA.AA.3850	3	1300947	1306142	12	-1.45945	LARGE-LOSS	FOCAL	1	CNTN6
TCGA.AA.3850	3	1350193	1397413	41	-2.15835	LARGE-LOSS	FOCAL	1	CNTN6
TCGA.AA.3966	3	1710305	1711414	3	-2.4803	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4614	3	1782523	1785253	3	-7.9318	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3952	3	2212317	2471588	117	-1.8676	LARGE-LOSS	FOCAL	1	CNTN4
TCGA.AA.3979	3	2412846	2427029	15	-5.811	LARGE-LOSS	FOCAL	1	CNTN4
TCGA.AG.3882	3	3383094	3385208	3	-1.7493	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5661	3	3433815	3434541	4	-9.0579	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5862	3	4329654	4420254	48	-5.2663	LARGE-LOSS	FOCAL	2	"SETMAR,SUMF1"
TCGA.AA.A00N.01A	3	4345458	4358609	5	-1.7107	LARGE-LOSS	FOCAL	1	SETMAR
TCGA.AA.A010.01A	3	4354551	4358609	4	-1.4562	LARGE-LOSS	FOCAL	1	SETMAR
TCGA.AA.3941	3	4601518	4603591	5	-1.3617	LARGE-LOSS	FOCAL	1	ITPR1
TCGA.AA.3811	3	4602497	4603591	4	-1.9317	LARGE-LOSS	FOCAL	1	ITPR1
TCGA.AA.3519	3	5401490	5405139	4	-4.5275	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3956	3	5950547	5950994	3	-1.9388	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	6179815	6193811	10	-2.77515	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	3	6179815	6205834	20	-3.1649	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	3	6183904	6205834	15	-2.8338	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	3	6183904	6205834	15	-2.2491	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	6183904	6205834	15	-2.3831	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	3	6198485	6207030	10	-1.6001	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5660	3	6213498	6237571	9	-1.3541	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	3	7086756	7125485	25	-1.9647	LARGE-LOSS	FOCAL	1	GRM7
TCGA.AA.3850	3	7086756	7149644	37	-1.80435	LARGE-LOSS	FOCAL	1	GRM7
TCGA.AA.3941	3	7138975	7149644	9	-1.9241	LARGE-LOSS	FOCAL	1	GRM7
TCGA.AA.3864	3	7455007	7456258	6	-1.334	LARGE-LOSS	FOCAL	1	GRM7
TCGA.AA.3982	3	7856287	7856945	4	-2.026	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	7889605	7890278	4	-1.6763	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	9419449	9426161	5	-2.1258	LARGE-LOSS	FOCAL	1	THUMPD3
TCGA.AA.A00N.01A	3	10103809	10116187	10	-1.6742	LARGE-LOSS	FOCAL	1	FANCD2
TCGA.AA.3872	3	10295846	10301299	3	-5.8051	LARGE-LOSS	FOCAL	1	TATDN2
TCGA.A6.3808.01A	3	10353522	10360786	6	-1.8536	LARGE-LOSS	FOCAL	1	SEC13
TCGA.AU.3779	3	11924677	11925609	3	-1.5995	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AATE	3	11953639	11953933	3	-4.1275	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	12531293	12537937	3	-1.4527	LARGE-LOSS	FOCAL	1	TSEN2
TCGA.AA.3526	3	12855692	12861001	3	-5.2594	LARGE-LOSS	FOCAL	1	CAND2
TCGA.CM.6676	3	13081135	13081648	3	-3.9975	LARGE-LOSS	FOCAL	1	IQSEC1
TCGA.NH.A50T	3	13215711	13217691	3	-4.5155	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3560	3	13879202	13890843	3	-4.1008	LARGE-LOSS	FOCAL	1	WNT7A
TCGA.AG.A023.01A	3	15609314	15609892	2	-2.7178	LARGE-LOSS	FOCAL	1	HACL1
TCGA.AA.A01C.01A	3	16312413	16313111	2	-3.7606	LARGE-LOSS	FOCAL	1	OXNAD1
TCGA.AA.A010.01A	3	16535221	16636757	6	-1.9233	LARGE-LOSS	FOCAL	2	"DAZL,RFTN1"
TCGA.AA.A00N.01A	3	16630097	16639907	9	-1.5081	LARGE-LOSS	FOCAL	1	DAZL
TCGA.AA.A00N.01A	3	18456553	19190148	5	-1.9526	LARGE-LOSS	FOCAL	2	"KCNH8,SATB1"
TCGA.CM.5862	3	20437723	20465207	8	-4.8647	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	21884902	21888120	8	-5.78645	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3516	3	22189490	22190857	3	-1.583	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6682	3	22576544	22592584	5	-3.7621	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	23848710	23952251	8	-1.6816	LARGE-LOSS	FOCAL	2	"NKIRAS1,UBE2E1"
TCGA.G4.6310	3	27472935	27485586	3	-1.3294	LARGE-LOSS	FOCAL	1	SLC4A7
TCGA.AA.A00N.01A	3	27498057	27761625	5	-1.395	LARGE-LOSS	FOCAL	2	"EOMES,SLC4A7"
TCGA.WS.AB45	3	31477071	31477769	4	-1.439	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A28C	3	31503396	31503719	3	-1.9354	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	33444265	33481181	8	-1.4753	LARGE-LOSS	FOCAL	1	UBP1
TCGA.AA.3530	3	36008681	36009057	3	-3.9667	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6155	3	36021076	36027916	3	-7.8059	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	3	37327428	37365037	11	-2.2199	LARGE-LOSS	FOCAL	1	GOLGA4
TCGA.D5.6530	3	37982107	37982756	3	-7.8013	LARGE-LOSS	FOCAL	1	CTDSPL
TCGA.A6.6138	3	37982107	37984447	5	-2.0419	LARGE-LOSS	FOCAL	1	CTDSPL
TCGA.F4.6704	3	37982460	37984447	4	-3.5228	LARGE-LOSS	FOCAL	1	CTDSPL
TCGA.AG.3909.01A	3	38086992	38105275	5	-2.0446	LARGE-LOSS	FOCAL	1	DLEC1
TCGA.AA.A00N.01A	3	38086992	38129747	9	-2.0144	LARGE-LOSS	FOCAL	1	DLEC1
TCGA.AA.3850	3	38841372	38848982	6	-1.52075	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	39430945	39453711	11	-1.5826	LARGE-LOSS	FOCAL	2	"RPSA,SLC25A38"
TCGA.AF.A56N	3	40401635	40405809	3	-1.6072	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	42659011	42662867	4	-1.7456	LARGE-LOSS	FOCAL	1	NKTR
TCGA.AA.A010.01A	3	42671965	42680079	8	-2.6347	LARGE-LOSS	FOCAL	1	NKTR
TCGA.AA.A00N.01A	3	42671965	42687332	13	-1.565	LARGE-LOSS	FOCAL	1	NKTR
TCGA.A6.3808.01A	3	42674084	42730344	20	-1.865	LARGE-LOSS	FOCAL	3	"KLHL40,NKTR,ZBTB47"
TCGA.AA.A010.01A	3	42680278	42702926	7	-2.9758	LARGE-LOSS	FOCAL	2	"NKTR,ZBTB47"
TCGA.AG.4009.01A	3	42700987	42705251	4	-1.5783	LARGE-LOSS	FOCAL	1	ZBTB47
TCGA.AF.3914.01A	3	42700987	42705691	5	-1.5826	LARGE-LOSS	FOCAL	1	ZBTB47
TCGA.AA.A010.01A	3	42704463	42705691	3	-1.8785	LARGE-LOSS	FOCAL	1	ZBTB47
TCGA.AA.A010.01A	3	44598491	44635636	7	-2.4682	LARGE-LOSS	FOCAL	2	"ZKSCAN7,ZNF660"
TCGA.A6.3808.01A	3	44841779	44893679	24	-1.8895	LARGE-LOSS	FOCAL	1	KIF15
TCGA.AA.A00N.01A	3	44852301	44872366	10	-1.5638	LARGE-LOSS	FOCAL	1	KIF15
TCGA.AA.A010.01A	3	44871415	44916084	15	-1.9096	LARGE-LOSS	FOCAL	2	"KIF15,TMEM42"
TCGA.AA.A00N.01A	3	44889413	44894205	5	-1.9175	LARGE-LOSS	FOCAL	1	KIF15
TCGA.AA.A00L.01A	3	44905642	44906480	2	-1.6244	LARGE-LOSS	FOCAL	1	TMEM42
TCGA.AA.A00N.01A	3	46871850	46874395	3	-2.3648	LARGE-LOSS	FOCAL	1	PRSS42
TCGA.CK.5914.01A	3	46871850	46874395	3	-1.6219	LARGE-LOSS	FOCAL	1	PRSS42
TCGA.AA.A010.01A	3	47018078	47036470	8	-1.9522	LARGE-LOSS	FOCAL	2	"CCDC12,NBEAL2"
TCGA.A6.3808.01A	3	47032651	47046947	19	-1.9975	LARGE-LOSS	FOCAL	1	NBEAL2
TCGA.AA.A00N.01A	3	47058552	47079118	4	-1.4044	LARGE-LOSS	FOCAL	1	SETD2
TCGA.A6.3808.01A	3	47446446	47462382	15	-2.0471	LARGE-LOSS	FOCAL	2	"PTPN23,SCAP"
TCGA.AA.A029.01A	3	47466938	47468885	4	-4.8463	LARGE-LOSS	FOCAL	1	SCAP
TCGA.AA.A010.01A	3	47604043	47651545	7	-2.0951	LARGE-LOSS	FOCAL	2	"CSPG5,SMARCC1"
TCGA.AA.A00O.01A	3	47884548	47891004	8	-3.4003	LARGE-LOSS	FOCAL	1	DHX30
TCGA.AA.A00N.01A	3	48485174	48500718	7	-1.9178	LARGE-LOSS	FOCAL	2	"ATRIP,TMA7"
TCGA.CK.5914.01A	3	48485174	48501175	8	-1.331	LARGE-LOSS	FOCAL	2	"ATRIP,TMA7"
TCGA.A6.3808.01A	3	48667033	48691695	33	-2.7785	LARGE-LOSS	FOCAL	2	"CELSR3,SLC26A6"
TCGA.AA.A00N.01A	3	48726989	48730337	3	-1.9424	LARGE-LOSS	FOCAL	1	IP6K2
TCGA.AA.A010.01A	3	49016873	49020570	5	-1.5098	LARGE-LOSS	FOCAL	1	ARIH2
TCGA.AA.A00N.01A	3	49060132	49083807	14	-1.5153	LARGE-LOSS	FOCAL	3	"IMPDH2,NDUFAF3,QRICH1"
TCGA.AA.A01C.01A	3	49152654	49154515	4	-2.8122	LARGE-LOSS	FOCAL	1	USP19
TCGA.A6.3808.01A	3	49720027	49728563	8	-3.6782	LARGE-LOSS	FOCAL	3	"APEH,MST1,RNF123"
TCGA.A6.3808.01A	3	49837120	49939811	50	-1.3533	LARGE-LOSS	FOCAL	6	"CAMKV,CDHR4,FAM212A,MST1R,TRAIP,UBA7"
TCGA.AA.A00N.01A	3	50106064	50154467	24	-1.3476	LARGE-LOSS	FOCAL	2	"RBM5,RBM6"
TCGA.AA.A004.01A	3	50224006	50229117	3	-5.8994	LARGE-LOSS	FOCAL	2	"GNAT1,SEMA3F"
TCGA.AG.A015.01A	3	50293577	50294127	2	-2.379	LARGE-LOSS	FOCAL	1	GNAI2
TCGA.AA.A00N.01A	3	51347619	51352360	5	-1.7128	LARGE-LOSS	FOCAL	1	DOCK3
TCGA.AF.3914.01A	3	51426304	51431104	6	-1.8981	LARGE-LOSS	FOCAL	2	"MANF,RBM15B"
TCGA.AA.A010.01A	3	51976614	51989622	11	-1.7152	LARGE-LOSS	FOCAL	2	"GPR62,PARP3"
TCGA.A6.3808.01A	3	51978058	52084794	32	-1.3784	LARGE-LOSS	FOCAL	8	"ABHD14A,ABHD14B,ACY1,DUSP7,GPR62,PARP3,PCBP4,RPL29"
TCGA.AA.A010.01A	3	51991022	52011858	11	-2.6537	LARGE-LOSS	FOCAL	4	"ABHD14A,ABHD14B,GPR62,PCBP4"
TCGA.AA.A010.01A	3	52014387	52109856	16	-1.8473	LARGE-LOSS	FOCAL	5	"ABHD14A,ACY1,DUSP7,POC1A,RPL29"
TCGA.AD.6889	3	52064509	52084039	3	-1.3696	LARGE-LOSS	FOCAL	1	DUSP7
TCGA.AA.A010.01A	3	52280671	52283634	7	-1.6955	LARGE-LOSS	FOCAL	1	PPM1M
TCGA.AA.A010.01A	3	52291429	52312170	10	-2.3202	LARGE-LOSS	FOCAL	1	WDR82
TCGA.AA.A02W.01A	3	52436263	52439079	5	-3.1912	LARGE-LOSS	FOCAL	1	BAP1
TCGA.AA.A00N.01A	3	52441140	52456186	12	-1.4667	LARGE-LOSS	FOCAL	2	"BAP1,PHF7"
TCGA.AA.A02J.01A	3	52453828	52454285	2	-6.419	LARGE-LOSS	FOCAL	1	PHF7
TCGA.A6.3808.01A	3	52536595	52562420	36	-2.3316	LARGE-LOSS	FOCAL	2	"NT5DC2,STAB1"
TCGA.AA.A010.01A	3	52541559	52555349	22	-1.5801	LARGE-LOSS	FOCAL	1	STAB1
TCGA.AA.A010.01A	3	52557431	52584420	12	-2.529	LARGE-LOSS	FOCAL	4	"NT5DC2,PBRM1,SMIM4,STAB1"
TCGA.AA.A010.01A	3	52692166	52696102	2	-1.3262	LARGE-LOSS	FOCAL	1	PBRM1
TCGA.AA.A010.01A	3	52702462	52727999	14	-2.5165	LARGE-LOSS	FOCAL	2	"GNL3,PBRM1"
TCGA.AA.A00N.01A	3	52712488	52745738	24	-1.9837	LARGE-LOSS	FOCAL	5	"GLT8D1,GNL3,NEK4,PBRM1,SPCS1"
TCGA.CK.5914.01A	3	52720714	52745738	21	-1.4419	LARGE-LOSS	FOCAL	4	"GLT8D1,GNL3,NEK4,SPCS1"
TCGA.AA.A010.01A	3	52728861	52734236	7	-2.0593	LARGE-LOSS	FOCAL	1	GLT8D1
TCGA.AG.3909.01A	3	52731689	52745738	5	-1.7106	LARGE-LOSS	FOCAL	3	"GLT8D1,NEK4,SPCS1"
TCGA.AA.A00N.01A	3	52794771	52802323	5	-1.4168	LARGE-LOSS	FOCAL	1	NEK4
TCGA.AA.A010.01A	3	53529201	53535605	3	-2.8931	LARGE-LOSS	FOCAL	1	CACNA1D
TCGA.AA.A00N.01A	3	53851783	54157491	38	-1.4071	LARGE-LOSS	FOCAL	5	"ACTR8,CACNA2D3,CHDH,IL17RB,SELK"
TCGA.AA.A02W.01A	3	53908191	53909924	2	-4.2505	LARGE-LOSS	FOCAL	1	ACTR8
TCGA.AA.A00N.01A	3	55513325	55520932	3	-1.9312	LARGE-LOSS	FOCAL	1	WNT5A
TCGA.AA.A010.01A	3	56597755	56649903	10	-1.7155	LARGE-LOSS	FOCAL	1	CCDC66
TCGA.AA.A010.01A	3	57107696	57139837	8	-1.3828	LARGE-LOSS	FOCAL	3	"ARHGEF3,IL17RD,SPATA12"
TCGA.AA.A00N.01A	3	57264693	57276814	7	-1.4041	LARGE-LOSS	FOCAL	1	APPL1
TCGA.AA.A00N.01A	3	57430383	57448367	12	-1.7527	LARGE-LOSS	FOCAL	1	DNAH12
TCGA.AA.A00N.01A	3	58270743	58303095	7	-1.8407	LARGE-LOSS	FOCAL	2	"ABHD6,RPP14"
TCGA.AG.A00H.01A	3	58394589	58395785	3	-4.6	LARGE-LOSS	FOCAL	1	PXK
TCGA.AA.A00N.01A	3	58413753	58494593	11	-1.4096	LARGE-LOSS	FOCAL	3	"ACOX2,KCTD6,PDHB"
TCGA.AA.A01C.01A	3	58415409	58417276	4	-1.8971	LARGE-LOSS	FOCAL	1	PDHB
TCGA.AA.A010.01A	3	58484400	58494593	4	-2.8053	LARGE-LOSS	FOCAL	2	"ACOX2,KCTD6"
TCGA.AH.6544	3	59731150	59788676	63	-1.5346	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A28H	3	59793061	59795924	3	-4.059	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.3583	3	59823780	59961303	110	-1.4078	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3941	3	59917927	59922808	12	-1.7145	LARGE-LOSS	FOCAL	1	FHIT
TCGA.CK.5913	3	59946709	59948569	4	-1.728	LARGE-LOSS	FOCAL	1	FHIT
TCGA.T9.A92H	3	59957813	60368381	340	-1.5273	LARGE-LOSS	FOCAL	1	FHIT
TCGA.D5.6533	3	60009209	60009520	3	-1.7898	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AY.5543	3	60051070	60171336	106	-1.7736	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3543	3	60076988	60412560	228	-3.0793	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DA	3	60110528	60152187	50	-1.6798	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AH.6897	3	60145725	60218464	43	-1.434	LARGE-LOSS	FOCAL	1	FHIT
TCGA.5M.AAT4	3	60152187	60280742	64	-1.7437	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DA	3	60155858	60279945	62	-3.5865	LARGE-LOSS	FOCAL	1	FHIT
TCGA.A6.3809	3	60200022	60593027	256	-1.3931	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DB	3	60226253	60242347	10	-3.4341	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3831	3	60249861	60290013	23	-1.7542	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3979	3	60276721	60725602	321	-5.7099	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DA	3	60280254	60456744	116	-5.9888	LARGE-LOSS	FOCAL	1	FHIT
TCGA.5M.AAT4	3	60284868	60331872	36	-3.5712	LARGE-LOSS	FOCAL	1	FHIT
TCGA.G4.6586	3	60286385	60316416	24	-1.6738	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AZ.4614	3	60303503	60386940	65	-4.319	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A28F	3	60306890	60536769	184	-2.0373	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.3580	3	60312416	60382827	51	-2.0566	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A0XD	3	60316240	60659566	248	-1.8605	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1HA	3	60323683	60364537	19	-7.6777	LARGE-LOSS	FOCAL	1	FHIT
TCGA.5M.AAT4	3	60332000	60487312	112	-1.4892	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3518	3	60335528	60495296	119	-2.8388	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DB	3	60344189	60359317	6	-4.815	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.3898	3	60359240	60377177	15	-1.5415	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3811	3	60359240	60400720	34	-3.2909	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AD.5900	3	60359240	60449008	67	-1.3352	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DB	3	60364045	60377177	13	-2.2028	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3860	3	60364045	60546395	157	-1.555	LARGE-LOSS	FOCAL	1	FHIT
TCGA.A6.6653	3	60364045	60572072	170	-2.5625	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3664	3	60375315	60465278	72	-4.4044	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3869	3	60380258	60386781	3	-5.192	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.3580	3	60386781	60386940	3	-9.7701	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.3580	3	60388321	60614445	181	-1.5709	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3529	3	60398155	60557851	136	-1.4043	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3941	3	60398302	60410186	13	-2.3424	LARGE-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	60405636	60499963	81	-1.7806	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.A02O	3	60417038	60417338	3	-4.6739	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3510	3	60417038	60498171	69	-1.8525	LARGE-LOSS	FOCAL	1	FHIT
TCGA.A6.2683	3	60441486	60535730	81	-1.6956	LARGE-LOSS	FOCAL	1	FHIT
TCGA.G4.6586	3	60446057	60711759	185	-1.6949	LARGE-LOSS	FOCAL	1	FHIT
TCGA.D5.6540	3	60448590	60478039	29	-3.285	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DB	3	60456744	60593027	124	-3.1453	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.3599	3	60456744	60660119	159	-2.6839	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DA	3	60456953	60661379	161	-2.6771	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AF.5654	3	60461389	60512888	56	-2.5732	LARGE-LOSS	FOCAL	1	FHIT
TCGA.D5.6531	3	60471103	60491102	23	-3.3141	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.3883	3	60477430	60488693	14	-1.4538	LARGE-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	60500081	60503107	3	-7.6983	LARGE-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	60503437	60546395	39	-1.8719	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.A01T	3	60509644	60531241	15	-2.2137	LARGE-LOSS	FOCAL	1	FHIT
TCGA.CA.5254	3	60516255	60546395	25	-2.1847	LARGE-LOSS	FOCAL	1	FHIT
TCGA.F4.6570	3	60527478	60567101	30	-1.5513	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3488	3	60565902	61189519	346	-1.334	LARGE-LOSS	FOCAL	1	FHIT
TCGA.CM.6675	3	60692291	60792281	61	-5.9696	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.A026	3	60711759	60736865	27	-1.7864	LARGE-LOSS	FOCAL	1	FHIT
TCGA.F4.6460	3	60711759	60770569	40	-1.5276	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DM.A28H	3	60723909	60763459	22	-2.3538	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.A026	3	60740479	60775381	16	-5.8396	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AM.5821	3	60750061	60938973	90	-1.6539	LARGE-LOSS	FOCAL	1	FHIT
TCGA.D5.6533	3	60756946	61277744	253	-1.4565	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.A026	3	60775459	60919393	61	-1.6124	LARGE-LOSS	FOCAL	1	FHIT
TCGA.DC.6682	3	60825651	60995599	76	-1.5551	LARGE-LOSS	FOCAL	1	FHIT
TCGA.A6.4105	3	60839057	60957886	62	-1.4579	LARGE-LOSS	FOCAL	1	FHIT
TCGA.CA.6716	3	60931989	61060612	82	-1.5666	LARGE-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	60942296	61011408	24	-1.871	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AA.3941	3	61096224	61100254	6	-1.4832	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AG.3882	3	61115119	61116008	3	-1.5757	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AM.5820	3	61126820	61127303	3	-7.1409	LARGE-LOSS	FOCAL	1	FHIT
TCGA.EI.6512	3	61126820	61127303	3	-4.6828	LARGE-LOSS	FOCAL	1	FHIT
TCGA.AF.3914.01A	3	62355730	62357190	3	-2.1	LARGE-LOSS	FOCAL	1	FEZF2
TCGA.AA.A010.01A	3	62355730	62388705	7	-2.1644	LARGE-LOSS	FOCAL	2	"CADPS,FEZF2"
TCGA.AA.3696	3	63109954	63110197	3	-4.277	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	63819745	63898780	8	-1.7863	LARGE-LOSS	FOCAL	2	"ATXN7,THOC7"
TCGA.AA.3982	3	64750561	64755691	9	-1.3521	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	65018628	65020795	5	-1.7746	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3685	3	65189643	65196306	3	-1.6532	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3726	3	65189643	65196306	3	-5.0358	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A026	3	65189643	65196306	3	-1.7502	LARGE-LOSS	FOCAL	0	None
TCGA.AH.6544	3	65913854	65914821	3	-2.1778	LARGE-LOSS	FOCAL	1	MAGI1
TCGA.AA.3850	3	66734824	66735565	3	-2.45385	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6533	3	66740868	66744270	3	-4.4565	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	67049353	67058414	3	-1.8667	LARGE-LOSS	FOCAL	1	KBTBD8
TCGA.AA.3979	3	67638697	67714560	43	-5.7052	LARGE-LOSS	FOCAL	1	SUCLG2
TCGA.AA.3864	3	68609672	68610029	3	-1.7883	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	68609672	68610029	3	-4.4192	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	68708938	68714008	3	-7.0399	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	69599956	69602456	6	-2.4243	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	70671049	70672049	4	-2.0417	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	70768255	70770716	5	-2.692	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	70848485	70853878	6	-1.7003	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	71064673	72799395	24	-1.4054	LARGE-LOSS	FOCAL	6	"EIF4E3,FOXP1,GPR27,PROK2,RYBP,SHQ1"
TCGA.5M.AAT4	3	72723251	72728824	3	-5.0235	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	3	73654031	73660852	3	-3.3088	LARGE-LOSS	FOCAL	1	PDZRN3
TCGA.CM.6163	3	75439780	75457857	3	-4.0167	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3725	3	75439780	75545171	11	-5.1214	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6158	3	75439780	75545171	12	-1.9163	LARGE-LOSS	FOCAL	0	None
TCGA.AY.6197	3	75453099	75545171	9	-6.83	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3952	3	75453099	75586270	12	-3.6823	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6531	3	75530894	75586270	4	-7.7566	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6885	3	75538842	75586270	3	-4.3703	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	75832444	77089871	2	-2.115	LARGE-LOSS	FOCAL	2	"ROBO2,ZNF717"
TCGA.QL.A97D	3	77581256	77591571	3	-1.3515	LARGE-LOSS	FOCAL	1	ROBO2
TCGA.5M.AAT4	3	77743036	77744228	3	-7.6166	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	78647970	78663759	4	-2.0021	LARGE-LOSS	FOCAL	1	ROBO1
TCGA.AA.3941	3	79109467	79127009	4	-7.9434	LARGE-LOSS	FOCAL	1	ROBO1
TCGA.G4.6303	3	81124362	81124546	3	-1.7212	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	3	89528520	93779780	28	-1.7004	LARGE-LOSS	FOCAL	5	"ARL13B,DHFRL1,EPHA3,PROS1,STX19"
TCGA.AA.A00N.01A	3	93754124	93772017	7	-1.7362	LARGE-LOSS	FOCAL	1	ARL13B
TCGA.AA.A010.01A	3	98519373	98568215	12	-1.3783	LARGE-LOSS	FOCAL	1	DCBLD2
TCGA.A6.3808.01A	3	98541043	98568215	4	-2.8424	LARGE-LOSS	FOCAL	1	DCBLD2
TCGA.AA.3941	3	105262147	105270220	12	-3.6921	LARGE-LOSS	FOCAL	1	ALCAM
TCGA.AZ.4308	3	105542434	105617745	18	-2.4305	LARGE-LOSS	FOCAL	1	CBLB
TCGA.AA.A02E.01A	3	108178155	108179084	2	-3.6501	LARGE-LOSS	FOCAL	1	MYH15
TCGA.AA.A00D.01A	3	108269959	108279444	7	-1.4536	LARGE-LOSS	FOCAL	1	KIAA1524
TCGA.AA.A00N.01A	3	108813707	108833161	6	-1.3346	LARGE-LOSS	FOCAL	1	MORC1
TCGA.AA.3526	3	110380239	110399462	3	-4.6392	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	111874206	111923527	10	-3.32175	LARGE-LOSS	FOCAL	1	SLC9C1
TCGA.AA.3941	3	111874206	111923527	10	-1.7422	LARGE-LOSS	FOCAL	1	SLC9C1
TCGA.AG.3598	3	112066359	112067437	3	-4.9084	LARGE-LOSS	FOCAL	1	CD200
TCGA.AA.A00N.01A	3	112255284	112301469	16	-1.3601	LARGE-LOSS	FOCAL	2	"ATG3,SLC35A5"
TCGA.AA.A00N.01A	3	112718245	112736243	11	-1.3802	LARGE-LOSS	FOCAL	2	"C3orf17,GTPBP8"
TCGA.AA.A010.01A	3	113634501	113697668	17	-2.2608	LARGE-LOSS	FOCAL	3	"GRAMD1C,KIAA1407,ZDHHC23"
TCGA.AG.A023.01A	3	113878555	113890531	2	-3.6303	LARGE-LOSS	FOCAL	1	DRD3
TCGA.AA.3811	3	115856129	115858481	3	-7.4668	LARGE-LOSS	FOCAL	1	LSAMP
TCGA.CM.6161	3	116279887	116916599	301	-1.349	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A69D	3	116426464	116426794	3	-7.1224	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A69D	3	116445081	116451543	15	-2.9537	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A69D	3	116583995	116729228	48	-2.9337	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3510	3	116736738	116740623	3	-1.7683	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	3	118618169	118642174	10	-1.537	LARGE-LOSS	FOCAL	1	IGSF11
TCGA.AA.A010.01A	3	118935050	118948693	5	-1.775	LARGE-LOSS	FOCAL	1	B4GALT4
TCGA.AA.3941	3	119145511	119150835	3	-1.439	LARGE-LOSS	FOCAL	1	TMEM39A
TCGA.AA.3688	3	119351397	119353937	3	-4.8556	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6626	3	119351397	119353937	3	-3.9424	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	121395689	121421276	10	-1.5548	LARGE-LOSS	FOCAL	1	GOLGB1
TCGA.AA.A00L.01A	3	121409558	121415339	5	-1.5985	LARGE-LOSS	FOCAL	1	GOLGB1
TCGA.CK.5914.01A	3	122284679	122290458	5	-1.4161	LARGE-LOSS	FOCAL	1	DTX3L
TCGA.AG.3909.01A	3	122436901	122496530	11	-1.3826	LARGE-LOSS	FOCAL	2	"HSPBAP1,PARP14"
TCGA.AA.A02W.01A	3	122864307	122864898	2	-5.0339	LARGE-LOSS	FOCAL	1	PDIA5
TCGA.AA.3844	3	124139222	124142248	5	-1.5106	LARGE-LOSS	FOCAL	1	KALRN
TCGA.A6.A56B	3	124449147	124449290	3	-4.6875	LARGE-LOSS	FOCAL	1	UMPS
TCGA.AA.A010.01A	3	124578052	124632392	7	-1.4634	LARGE-LOSS	FOCAL	2	"ITGB5,MUC13"
TCGA.AA.A02Y	3	125477761	125547823	4	-1.348	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	125651446	125702044	7	-1.4634	LARGE-LOSS	FOCAL	2	"ALG1L,ROPN1B"
TCGA.AA.A010.01A	3	126062521	126125956	5	-1.3294	LARGE-LOSS	FOCAL	2	"CCDC37,KLF15"
TCGA.AA.A010.01A	3	126178441	126208072	10	-1.8355	LARGE-LOSS	FOCAL	2	"UROC1,ZXDC"
TCGA.AA.A010.01A	3	126255054	126272103	5	-2.0114	LARGE-LOSS	FOCAL	2	"C3orf22,CHST13"
TCGA.A6.3808.01A	3	126707508	127340459	46	-1.6469	LARGE-LOSS	FOCAL	4	"C3orf56,MCM2,PLXNA1,TPRA1"
TCGA.5M.AAT4	3	126737267	126756303	3	-3.9694	LARGE-LOSS	FOCAL	1	PLXNA1
TCGA.AG.A023.01A	3	127298536	127325421	5	-1.4486	LARGE-LOSS	FOCAL	2	"MCM2,TPRA1"
TCGA.AA.A010.01A	3	127324914	127327628	4	-1.4147	LARGE-LOSS	FOCAL	1	MCM2
TCGA.AA.A010.01A	3	127334664	127390237	14	-2.1575	LARGE-LOSS	FOCAL	2	"MCM2,PODXL2"
TCGA.AA.A010.01A	3	127391094	127410994	9	-1.6777	LARGE-LOSS	FOCAL	3	"ABTB1,MGLL,PODXL2"
TCGA.AA.A010.01A	3	127771333	127786767	10	-2.6149	LARGE-LOSS	FOCAL	1	SEC61A1
TCGA.AA.A00N.01A	3	127771613	127786266	8	-1.6976	LARGE-LOSS	FOCAL	1	SEC61A1
TCGA.AA.A010.01A	3	128690040	128711836	7	-1.496	LARGE-LOSS	FOCAL	1	KIAA1257
TCGA.AA.A010.01A	3	129007655	129034062	6	-1.7772	LARGE-LOSS	FOCAL	2	"H1FX,HMCES"
TCGA.AF.6136	3	129761123	129891740	6	-5.5018	LARGE-LOSS	FOCAL	1	ALG1L2
TCGA.CA.6719	3	129761123	129891740	6	-2.8018	LARGE-LOSS	FOCAL	1	ALG1L2
TCGA.AH.6643	3	129761123	129892968	7	-1.6609	LARGE-LOSS	FOCAL	1	ALG1L2
TCGA.AG.A023.01A	3	129811927	130150282	9	-1.7356	LARGE-LOSS	FOCAL	2	"ALG1L2,COL6A5"
TCGA.A6.3809	3	129848416	129891740	3	-7.1815	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3692	3	129848416	129891740	3	-1.8098	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6901	3	129848416	129891740	3	-2.4134	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3581	3	129848416	129891740	3	-4.4552	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6297	3	129876982	129920257	4	-3.7086	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3688	3	130904395	130907500	3	-6.5967	LARGE-LOSS	FOCAL	1	NEK11
TCGA.AA.A010.01A	3	132166169	132213875	28	-1.6942	LARGE-LOSS	FOCAL	1	DNAJC13
TCGA.AA.A00N.01A	3	132179077	132201032	13	-1.7614	LARGE-LOSS	FOCAL	1	DNAJC13
TCGA.AA.A00N.01A	3	132424534	132438510	7	-1.5244	LARGE-LOSS	FOCAL	1	NPHP3
TCGA.AA.A010.01A	3	132424534	132438510	7	-1.4859	LARGE-LOSS	FOCAL	1	NPHP3
TCGA.AA.A00N.01A	3	133193715	133306702	6	-1.3884	LARGE-LOSS	FOCAL	2	"BFSP2,CDV3"
TCGA.AA.A010.01A	3	133293824	133306702	5	-2.6596	LARGE-LOSS	FOCAL	1	CDV3
TCGA.AA.A00N.01A	3	133371278	133379833	7	-1.8801	LARGE-LOSS	FOCAL	1	TOPBP1
TCGA.AA.3941	3	137208724	137215819	3	-4.8529	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02J.01A	3	137882144	137882570	2	-8.3235	LARGE-LOSS	FOCAL	1	DBR1
TCGA.AA.A010.01A	3	138664414	138669057	5	-2.2153	LARGE-LOSS	FOCAL	2	"FOXL2,FOXL2NB"
TCGA.CA.5797	3	139461287	139464499	3	-1.8598	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5661	3	139727562	139731265	5	-8.3532	LARGE-LOSS	FOCAL	1	CLSTN2
TCGA.AA.A010.01A	3	141205874	141235128	3	-1.5842	LARGE-LOSS	FOCAL	1	RASA2
TCGA.A6.3808.01A	3	141884426	141917595	11	-2.1375	LARGE-LOSS	FOCAL	1	GK5
TCGA.AA.A00N.01A	3	142761919	142840180	7	-1.7004	LARGE-LOSS	FOCAL	2	"CHST2,U2SURP"
TCGA.T9.A92H	3	143755703	143819652	19	-1.4328	LARGE-LOSS	FOCAL	0	None
TCGA.CA.6716	3	144165871	144286613	43	-1.737	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A285	3	144988392	144993268	3	-1.9388	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	3	145502640	145503310	3	-2.0083	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	3	147106547	147131102	7	-1.3898	LARGE-LOSS	FOCAL	2	"ZIC1,ZIC4"
TCGA.AA.A00N.01A	3	148711913	148727065	4	-1.4246	LARGE-LOSS	FOCAL	1	GYG1
TCGA.AA.A010.01A	3	148711913	148727065	4	-2.4804	LARGE-LOSS	FOCAL	1	GYG1
TCGA.AA.A00N.01A	3	149087574	149095118	4	-1.5787	LARGE-LOSS	FOCAL	1	TM4SF1
TCGA.AA.A010.01A	3	149677795	149686094	5	-2.1667	LARGE-LOSS	FOCAL	2	"PFN2,RNF13"
TCGA.AA.A00N.01A	3	152553615	152884631	8	-2.0244	LARGE-LOSS	FOCAL	2	"P2RY1,RAP2B"
TCGA.CK.5914.01A	3	152553615	152884631	8	-1.5189	LARGE-LOSS	FOCAL	2	"P2RY1,RAP2B"
TCGA.AA.3850	3	155142296	155145784	3	-6.65795	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	156865978	156877135	7	-2.0718	LARGE-LOSS	FOCAL	1	CCNL1
TCGA.AA.A00N.01A	3	157817607	157841618	7	-1.4906	LARGE-LOSS	FOCAL	2	"RSRC1,SHOX2"
TCGA.AA.A00N.01A	3	158522054	158539314	9	-1.496	LARGE-LOSS	FOCAL	1	MFSD1
TCGA.AA.A00N.01A	3	159710760	159713159	3	-1.8444	LARGE-LOSS	FOCAL	1	IL12A
TCGA.AA.A00N.01A	3	160102292	160132103	8	-1.561	LARGE-LOSS	FOCAL	2	"IFT80,SMC4"
TCGA.AA.A00N.01A	3	160939767	160952869	6	-1.6812	LARGE-LOSS	FOCAL	1	NMD3
TCGA.AA.3977	3	162949679	162968668	3	-4.4214	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A50U	3	162968668	163159977	29	-1.3771	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	3	162971105	162982246	4	-8.9676	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	162971105	162983195	5	-8.01085	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	3	165951072	165957103	3	-8.0228	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3685	3	167659755	167661135	3	-1.5939	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	3	169381045	169485173	2	-1.6303	LARGE-LOSS	FOCAL	2	"ACTRT3,MECOM"
TCGA.AG.3909.01A	3	169524591	169526367	3	-1.3897	LARGE-LOSS	FOCAL	1	LRRC34
TCGA.AA.A010.01A	3	170078090	170102294	4	-1.9155	LARGE-LOSS	FOCAL	1	SKIL
TCGA.A6.3808.01A	3	170078090	170110015	7	-2.9237	LARGE-LOSS	FOCAL	1	SKIL
TCGA.AA.3850	3	170815938	170818167	3	-3.66735	LARGE-LOSS	FOCAL	1	TNIK
TCGA.AA.A00N.01A	3	171443739	171455645	6	-1.3976	LARGE-LOSS	FOCAL	1	PLD1
TCGA.AF.A56L	3	173131043	173131864	3	-1.8255	LARGE-LOSS	FOCAL	1	NLGN1
TCGA.NH.A6GA	3	173209691	173211427	7	-3.6918	LARGE-LOSS	FOCAL	1	NLGN1
TCGA.EI.6508	3	174177348	174311585	30	-2.7758	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3697	3	174332807	174442853	43	-1.5734	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6460	3	174376086	174382360	3	-4.1119	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6682	3	174737565	174808331	24	-1.4199	LARGE-LOSS	FOCAL	1	NAALADL2
TCGA.T9.A92H	3	174740388	174741582	3	-1.6616	LARGE-LOSS	FOCAL	1	NAALADL2
TCGA.AA.3517	3	174814398	175071294	116	-1.5904	LARGE-LOSS	FOCAL	1	NAALADL2
TCGA.AG.A026	3	174899111	175115708	91	-1.499	LARGE-LOSS	FOCAL	1	NAALADL2
TCGA.G4.6310	3	175067921	175068217	3	-3.9382	LARGE-LOSS	FOCAL	1	NAALADL2
TCGA.CA.6716	3	175071294	175087939	3	-6.863	LARGE-LOSS	FOCAL	1	NAALADL2
TCGA.T9.A92H	3	175171065	175334882	73	-1.4433	LARGE-LOSS	FOCAL	1	NAALADL2
TCGA.AG.3727	3	175411936	175496865	14	-4.8247	LARGE-LOSS	FOCAL	1	NAALADL2
TCGA.AA.3811	3	176011400	176014390	3	-6.6541	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	3	178960675	179131152	29	-1.551	LARGE-LOSS	FOCAL	4	"GNB4,KCNMB3,MFN1,ZNF639"
TCGA.AA.A00N.01A	3	178968514	179076581	10	-1.5962	LARGE-LOSS	FOCAL	3	"KCNMB3,MFN1,ZNF639"
TCGA.AA.A02H.01A	3	179592066	179593092	2	-2.6967	LARGE-LOSS	FOCAL	1	PEX5L
TCGA.AA.3850	3	180193346	180194349	3	-6.35885	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	182019941	182026372	5	-2.25015	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	182059447	182068476	3	-1.69555	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	3	182262872	182301685	12	-1.60995	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	182665299	182683284	4	-1.5897	LARGE-LOSS	FOCAL	1	DCUN1D1
TCGA.AA.A010.01A	3	183516637	183561969	17	-1.708	LARGE-LOSS	FOCAL	3	"MAP6D1,PARL,YEATS2"
TCGA.AA.A01I.01A	3	183639038	183655642	5	-3.7132	LARGE-LOSS	FOCAL	1	ABCC5
TCGA.AA.A010.01A	3	183854373	183859661	5	-2.0233	LARGE-LOSS	FOCAL	1	EIF2B5
TCGA.AA.A010.01A	3	183860008	183881378	8	-2.6437	LARGE-LOSS	FOCAL	2	"DVL3,EIF2B5"
TCGA.AA.A010.01A	3	183882003	183885637	8	-2.0522	LARGE-LOSS	FOCAL	1	DVL3
TCGA.AA.A02F.01A	3	183910337	183995694	14	-1.9083	LARGE-LOSS	FOCAL	5	"ABCF3,ALG3,CAMK2N2,ECE2,VWA5B2"
TCGA.AA.A010.01A	3	183950947	183958528	10	-1.4013	LARGE-LOSS	FOCAL	1	VWA5B2
TCGA.AA.A010.01A	3	183960265	184026236	42	-2.085	LARGE-LOSS	FOCAL	4	"ALG3,CAMK2N2,ECE2,PSMD2"
TCGA.CK.5914.01A	3	184017578	184025115	13	-1.429	LARGE-LOSS	FOCAL	1	PSMD2
TCGA.AA.A00N.01A	3	184017578	184026236	15	-1.9998	LARGE-LOSS	FOCAL	1	PSMD2
TCGA.AA.A010.01A	3	184033517	184079146	40	-1.5484	LARGE-LOSS	FOCAL	3	"CLCN2,EIF4G1,FAM131A"
TCGA.A6.3808.01A	3	184069761	184082706	15	-2.006	LARGE-LOSS	FOCAL	2	"CLCN2,POLR2H"
TCGA.AA.A010.01A	3	184081220	184085926	4	-2.3232	LARGE-LOSS	FOCAL	1	POLR2H
TCGA.AA.A010.01A	3	184090269	184093945	5	-3.0103	LARGE-LOSS	FOCAL	1	THPO
TCGA.AA.A010.01A	3	184098431	184289037	16	-2.2175	LARGE-LOSS	FOCAL	2	"CHRD,EPHB3"
TCGA.AA.A010.01A	3	184290253	184298139	8	-1.3891	LARGE-LOSS	FOCAL	1	EPHB3
TCGA.AG.3598	3	184474825	184475832	3	-4.3804	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	185540895	185542573	2	-2.7278	LARGE-LOSS	FOCAL	1	IGF2BP2
TCGA.AA.3872	3	186254831	186257995	3	-2.2387	LARGE-LOSS	FOCAL	1	CRYGS
TCGA.AA.3966	3	186396615	186396644	3	-4.326	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	186501313	186522354	17	-2.0138	LARGE-LOSS	FOCAL	2	"EIF4A2,RFC4"
TCGA.AG.3909.01A	3	186501313	186522354	17	-1.5441	LARGE-LOSS	FOCAL	2	"EIF4A2,RFC4"
TCGA.DM.A1D6	3	188485239	188518433	8	-6.5988	LARGE-LOSS	FOCAL	1	LPP
TCGA.AA.3850	3	190240589	190262051	12	-2.19055	LARGE-LOSS	FOCAL	1	IL1RAP
TCGA.AA.A00N.01A	3	190573062	190580306	5	-1.5056	LARGE-LOSS	FOCAL	1	GMNC
TCGA.CM.4752	3	191119817	191124017	3	-1.9913	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	193854158	193855461	4	-2.8957	LARGE-LOSS	FOCAL	1	HES1
TCGA.A6.5661	3	193967427	194110433	50	-2.3273	LARGE-LOSS	FOCAL	2	"CPN2,LRRC15"
TCGA.AA.A010.01A	3	194343907	194386232	14	-1.7307	LARGE-LOSS	FOCAL	2	"LSG1,TMEM44"
TCGA.AA.A010.01A	3	195474008	195477728	3	-1.3853	LARGE-LOSS	FOCAL	1	MUC4
TCGA.AA.A010.01A	3	195479184	195498476	17	-2.4542	LARGE-LOSS	FOCAL	1	MUC4
TCGA.AA.A010.01A	3	195501013	195622066	29	-1.4168	LARGE-LOSS	FOCAL	2	"MUC4,TNK2"
TCGA.A6.3808.01A	3	195505122	195513326	11	-4.8566	LARGE-LOSS	FOCAL	1	MUC4
TCGA.AA.A00N.01A	3	195796279	195803855	6	-1.4593	LARGE-LOSS	FOCAL	1	TFRC
TCGA.AG.3909.01A	3	195966401	196022817	9	-1.4354	LARGE-LOSS	FOCAL	2	"PCYT1A,TCTEX1D2"
TCGA.AA.A00N.01A	3	195966401	196042920	11	-2.0481	LARGE-LOSS	FOCAL	2	"PCYT1A,TCTEX1D2"
TCGA.AA.A02E.01A	3	195974186	195975041	2	-3.9953	LARGE-LOSS	FOCAL	1	PCYT1A
TCGA.AA.A01C.01A	3	195974186	196053773	12	-1.3223	LARGE-LOSS	FOCAL	3	"PCYT1A,TCTEX1D2,TM4SF19"
TCGA.AA.A010.01A	3	196241958	196460621	16	-1.5142	LARGE-LOSS	FOCAL	6	"CEP19,FBXO45,NRROS,PIGX,SMCO1,WDR53"
TCGA.AA.A00N.01A	3	196434405	196460621	8	-1.8993	LARGE-LOSS	FOCAL	2	"CEP19,PIGX"
TCGA.AA.A010.01A	3	196678662	196746448	10	-1.4675	LARGE-LOSS	FOCAL	2	"MFI2,PIGZ"
TCGA.AA.3982	3	196974317	196974756	3	-1.6204	LARGE-LOSS	FOCAL	1	DLG1
TCGA.AA.A00N.01A	3	197009503	197023969	3	-1.7975	LARGE-LOSS	FOCAL	1	DLG1
TCGA.DC.6160.01A	3	198016549	198038413	10	-1.3696	LARGE-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	3	198016549	198111565	15	-1.4286	LARGE-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	3	198276949	198280410	3	-2.0877	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	647603	660265	16	-1.5153	LARGE-LOSS	FOCAL	1	PDE6B
TCGA.AA.3930.01A	4	654228	661598	10	-1.7615	LARGE-LOSS	FOCAL	1	PDE6B
TCGA.AA.A010.01A	4	661598	680294	20	-2.5445	LARGE-LOSS	FOCAL	4	"ATP5I,MFSD7,MYL5,PDE6B"
TCGA.AG.A01W.01A	4	668497	670275	4	-1.4691	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	898377	946135	10	-1.6536	LARGE-LOSS	FOCAL	2	"GAK,TMEM175"
TCGA.AA.A010.01A	4	941842	1018696	41	-1.8527	LARGE-LOSS	FOCAL	5	"DGKQ,FGFRL1,IDUA,SLC26A1,TMEM175"
TCGA.A6.5665	4	1229093	1236839	4	-9.4759	LARGE-LOSS	FOCAL	1	CTBP1
TCGA.AA.A010.01A	4	1235016	1246201	4	-3.1367	LARGE-LOSS	FOCAL	1	CTBP1
TCGA.AA.A010.01A	4	1695272	1705275	6	-2.4577	LARGE-LOSS	FOCAL	1	SLBP
TCGA.AA.A010.01A	4	1718886	1795615	16	-1.456	LARGE-LOSS	FOCAL	3	"FGFR3,TACC3,TMEM129"
TCGA.AA.A010.01A	4	1800944	1850805	24	-2.0525	LARGE-LOSS	FOCAL	2	"FGFR3,LETM1"
TCGA.AG.4009.01A	4	1816112	1824674	6	-1.4754	LARGE-LOSS	FOCAL	1	LETM1
TCGA.AA.A010.01A	4	2045522	2087292	9	-1.9496	LARGE-LOSS	FOCAL	3	"C4orf48,NAT8L,POLN"
TCGA.AA.A00N.01A	4	2230774	2241718	5	-1.9328	LARGE-LOSS	FOCAL	2	"HAUS3,POLN"
TCGA.AA.A010.01A	4	2230774	2275751	15	-1.9025	LARGE-LOSS	FOCAL	4	"HAUS3,MXD4,POLN,ZFYVE28"
TCGA.AA.A010.01A	4	2814067	2835377	13	-2.2522	LARGE-LOSS	FOCAL	1	SH3BP2
TCGA.A6.3808.01A	4	2927704	2941207	11	-2.2837	LARGE-LOSS	FOCAL	3	"ADD1,MFSD10,NOP14"
TCGA.AA.A00N.01A	4	2940508	2959291	17	-1.6338	LARGE-LOSS	FOCAL	1	NOP14
TCGA.AG.3909.01A	4	2948101	2959291	10	-1.895	LARGE-LOSS	FOCAL	1	NOP14
TCGA.AA.A010.01A	4	3088651	3108980	5	-2.7212	LARGE-LOSS	FOCAL	1	HTT
TCGA.AG.3909.01A	4	3265552	3416424	8	-1.7845	LARGE-LOSS	FOCAL	1	RGS12
TCGA.AA.A00N.01A	4	3344614	3430236	15	-1.3988	LARGE-LOSS	FOCAL	1	RGS12
TCGA.A6.3808.01A	4	3416424	4249244	50	-1.574	LARGE-LOSS	FOCAL	7	"ADRA2C,DOK7,HGFAC,LRPAP1,OTOP1,RGS12,TMEM128"
TCGA.A6.5666	4	3713264	3714338	4	-2.4251	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A50T	4	4118956	4166982	4	-3.4834	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	4239515	4249244	4	-2.3362	LARGE-LOSS	FOCAL	1	TMEM128
TCGA.AA.3976	4	5620514	5622041	3	-6.806	LARGE-LOSS	FOCAL	1	EVC2
TCGA.AA.3979	4	5620514	5622041	3	-1.7828	LARGE-LOSS	FOCAL	1	EVC2
TCGA.AA.A010.01A	4	5690872	5746919	11	-1.356	LARGE-LOSS	FOCAL	2	"EVC,EVC2"
TCGA.AA.A010.01A	4	7026713	7065771	9	-2.0821	LARGE-LOSS	FOCAL	4	"CCDC96,GRPEL1,TADA2B,TBC1D14"
TCGA.AY.A71X	4	7625630	7625978	3	-1.6495	LARGE-LOSS	FOCAL	1	SORCS2
TCGA.QG.A5YX	4	7686277	7696170	11	-2.6985	LARGE-LOSS	FOCAL	1	SORCS2
TCGA.AA.3558	4	8078951	8126324	32	-1.364	LARGE-LOSS	FOCAL	1	ABLIM2
TCGA.AA.A010.01A	4	8284117	8295766	5	-1.4158	LARGE-LOSS	FOCAL	1	HTRA3
TCGA.AA.3941	4	9384845	9388422	3	-3.8408	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	10099295	10447271	6	-1.9991	LARGE-LOSS	FOCAL	2	"WDR1,ZNF518B"
TCGA.AA.3858	4	10274625	10275981	4	-2.2112	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	4	10990765	10990942	3	-1.4237	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5862	4	11491684	11492061	3	-4.7295	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	4	12344082	12344245	3	-1.5047	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	12344082	12360317	7	-3.7296	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	12548962	12549189	3	-7.3457	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	13601403	15018761	16	-2.3552	LARGE-LOSS	FOCAL	2	"BOD1L1,CPEB2"
TCGA.AG.4009.01A	4	13621515	15009908	3	-1.3372	LARGE-LOSS	FOCAL	2	"BOD1L1,CPEB2"
TCGA.AA.3941	4	14274966	14284342	17	-2.9938	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02F.01A	4	15504035	15504408	2	-5.819	LARGE-LOSS	FOCAL	1	CC2D2A
TCGA.AA.A00N.01A	4	15597658	15717297	24	-1.3572	LARGE-LOSS	FOCAL	4	"BST1,CC2D2A,FAM200B,FBXL5"
TCGA.AA.A010.01A	4	15628451	15656768	8	-1.9276	LARGE-LOSS	FOCAL	1	FBXL5
TCGA.AA.3844	4	15748371	15748824	3	-1.3391	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	16476936	16477987	3	-3.726	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	4	16477861	16478275	3	-2.776	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	4	16477861	16478275	3	-4.5421	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	4	16719114	16724802	4	-2.5265	LARGE-LOSS	FOCAL	1	LDB2
TCGA.AA.3982	4	17240426	17240786	3	-1.9691	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	17372673	17376881	7	-1.4171	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	17805077	17825243	9	-1.4147	LARGE-LOSS	FOCAL	2	"DCAF16,NCAPG"
TCGA.AA.A00N.01A	4	17813807	17825243	8	-1.6954	LARGE-LOSS	FOCAL	1	NCAPG
TCGA.AA.3872	4	19802743	19811014	3	-3.5079	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	20258230	20270412	3	-1.9356	LARGE-LOSS	FOCAL	1	SLIT2
TCGA.AA.3844	4	22967709	23013201	3	-7.1476	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	25005026	25030065	7	-2.3865	LARGE-LOSS	FOCAL	1	LGI2
TCGA.AZ.4614	4	25082410	25084124	3	-5.9909	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	25253915	25270707	8	-2.2428	LARGE-LOSS	FOCAL	1	PI4K2B
TCGA.AG.A02G.01A	4	25314384	25316885	3	-1.3225	LARGE-LOSS	FOCAL	1	ZCCHC4
TCGA.AA.3850	4	26650112	26728718	9	-1.37985	LARGE-LOSS	FOCAL	1	TBC1D19
TCGA.AA.3850	4	26965305	26966905	3	-2.20805	LARGE-LOSS	FOCAL	1	STIM2
TCGA.AA.3851	4	29074853	29258907	47	-1.3692	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4681	4	29520974	29521621	3	-1.6147	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	30723807	30732293	3	-1.8959	LARGE-LOSS	FOCAL	1	PCDH7
TCGA.AA.3850	4	33152141	33153813	4	-7.90345	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	33152141	33153813	4	-8.8792	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	33158268	33179683	5	-1.44025	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	33643359	33644535	3	-5.82505	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	34418902	34436334	4	-7.75135	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AAT5	4	35495097	35496560	3	-4.2579	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A6GC	4	35495097	35496560	3	-3.9648	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A023.01A	4	36291993	37591699	7	-1.8229	LARGE-LOSS	FOCAL	3	"C4orf19,DTHD1,NWD2"
TCGA.AG.3909.01A	4	39439319	39501741	19	-1.33	LARGE-LOSS	FOCAL	4	"KLB,LIAS,RPL9,UGDH"
TCGA.AA.A00N.01A	4	40127716	40155733	7	-1.8079	LARGE-LOSS	FOCAL	1	N4BP2
TCGA.AG.3909.01A	4	40138513	40155733	5	-1.5227	LARGE-LOSS	FOCAL	1	N4BP2
TCGA.CK.5914.01A	4	40138513	40155733	5	-1.5586	LARGE-LOSS	FOCAL	1	N4BP2
TCGA.AA.3850	4	41175925	41177944	4	-1.56145	LARGE-LOSS	FOCAL	1	APBB2
TCGA.AA.A010.01A	4	41747812	41750335	3	-2.3075	LARGE-LOSS	FOCAL	1	PHOX2B
TCGA.AA.3982	4	42725750	42727693	3	-1.4953	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	4	42748263	42751331	6	-1.7462	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	4	42751505	42752007	3	-6.4588	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2692	4	43888112	43900284	3	-2.407	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	4	44173591	44186432	3	-7.2148	LARGE-LOSS	FOCAL	1	KCTD8
TCGA.AA.A00N.01A	4	44682416	44689997	8	-1.8334	LARGE-LOSS	FOCAL	1	GUF1
TCGA.AA.A00N.01A	4	46388044	46995302	12	-1.3394	LARGE-LOSS	FOCAL	3	"COX7B2,GABRA2,GABRA4"
TCGA.DC.4749	4	48336370	48336819	3	-2.212	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	48486901	48512832	12	-1.6559	LARGE-LOSS	FOCAL	3	"FRYL,SLC10A4,ZAR1"
TCGA.AA.A010.01A	4	48494730	48516998	11	-2.125	LARGE-LOSS	FOCAL	2	"FRYL,ZAR1"
TCGA.AA.A00N.01A	4	52890091	52935948	10	-1.3242	LARGE-LOSS	FOCAL	2	"SGCB,SPATA18"
TCGA.AA.3982	4	54548325	54548684	3	-3.3367	LARGE-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	4	54966475	54967722	2	-1.6735	LARGE-LOSS	FOCAL	1	GSX2
TCGA.AA.3982	4	55309492	55309684	3	-1.6513	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02H.01A	4	55569868	55575540	3	-1.3317	LARGE-LOSS	FOCAL	1	KIT
TCGA.AA.A00N.01A	4	55976528	55987212	7	-1.5327	LARGE-LOSS	FOCAL	1	KDR
TCGA.AA.3844	4	56696442	56702298	4	-2.1072	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	56696442	56702298	4	-4.29975	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	56696442	56702298	4	-3.0351	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	4	56696442	56702298	4	-1.9286	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	56818246	56825794	5	-1.6197	LARGE-LOSS	FOCAL	1	CEP135
TCGA.AA.A00N.01A	4	57173661	57179341	3	-1.59	LARGE-LOSS	FOCAL	1	KIAA1211
TCGA.AG.3909.01A	4	57366695	57389816	5	-1.8299	LARGE-LOSS	FOCAL	2	"ARL9,SRP72"
TCGA.AA.A010.01A	4	57776847	57795990	4	-2.3514	LARGE-LOSS	FOCAL	1	REST
TCGA.AA.3941	4	58074562	58076339	4	-1.3901	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	58790505	58796030	5	-6.9751	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D8	4	58814736	58816809	5	-1.6457	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	59822167	59825282	4	-6.7457	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	60533322	60579745	29	-2.4447	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	61415480	61428912	11	-3.524	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	63781869	63816022	10	-4.5568	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A5IV	4	64105659	64151912	12	-2.0579	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6514	4	64126428	64151659	6	-1.5477	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1DA	4	64141277	64151912	3	-7.6359	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3955	4	64252208	64253097	3	-6.926	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	68494726	68506811	8	-1.8361	LARGE-LOSS	FOCAL	1	UBA6
TCGA.AG.3909.01A	4	68497356	68506811	6	-1.4678	LARGE-LOSS	FOCAL	1	UBA6
TCGA.AA.A02F.01A	4	69403342	69433457	6	-2.5826	LARGE-LOSS	FOCAL	1	UGT2B17
TCGA.AA.A00N.01A	4	69968474	69978333	5	-1.8254	LARGE-LOSS	FOCAL	1	UGT2B7
TCGA.AG.3909.01A	4	70615387	70620746	3	-1.3945	LARGE-LOSS	FOCAL	1	SULT1B1
TCGA.AA.A00N.01A	4	70798203	70811814	14	-1.6459	LARGE-LOSS	FOCAL	1	CSN1S1
TCGA.AA.A00N.01A	4	74702684	74703273	2	-1.7567	LARGE-LOSS	FOCAL	1	CXCL6
TCGA.AA.A02F.01A	4	74719029	74719694	3	-6.1169	LARGE-LOSS	FOCAL	1	PF4V1
TCGA.AA.3831	4	74956115	74959092	3	-3.8861	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	75312213	75485837	5	-1.7137	LARGE-LOSS	FOCAL	1	AREG
TCGA.AF.6672	4	77199903	77202018	3	-3.9133	LARGE-LOSS	FOCAL	2	"FAM47E,FAM47E-STBD1"
TCGA.AA.3496	4	77289785	77292318	3	-6.6886	LARGE-LOSS	FOCAL	1	CCDC158
TCGA.CK.6746	4	77289785	77292318	3	-6.7518	LARGE-LOSS	FOCAL	1	CCDC158
TCGA.AA.A010.01A	4	77969372	77987355	6	-1.3778	LARGE-LOSS	FOCAL	1	CCNI
TCGA.AG.A00H.01A	4	77976266	77977373	3	-3.7338	LARGE-LOSS	FOCAL	1	CCNI
TCGA.AA.A00N.01A	4	77987355	78086917	7	-1.8489	LARGE-LOSS	FOCAL	2	"CCNG2,CCNI"
TCGA.AA.3846	4	78509803	78510918	3	-6.8435	LARGE-LOSS	FOCAL	1	CXCL13
TCGA.AA.3509.01A	4	78792851	78808312	4	-1.4292	LARGE-LOSS	FOCAL	1	MRPL1
TCGA.AA.A00N.01A	4	80957059	81122425	9	-1.3354	LARGE-LOSS	FOCAL	2	"ANTXR2,PRDM8"
TCGA.AA.A00N.01A	4	82377758	83349132	14	-1.381	LARGE-LOSS	FOCAL	3	"HNRNPD,HNRNPDL,RASGEF1B"
TCGA.AG.3909.01A	4	83347151	83349132	4	-1.799	LARGE-LOSS	FOCAL	1	HNRNPDL
TCGA.CK.5914.01A	4	83347151	83349132	4	-1.5197	LARGE-LOSS	FOCAL	1	HNRNPDL
TCGA.AA.A00N.01A	4	83796830	83828911	8	-1.3684	LARGE-LOSS	FOCAL	2	"SEC31A,THAP9"
TCGA.AA.A01K.01A	4	84025997	84028905	2	-3.4551	LARGE-LOSS	FOCAL	1	PLAC8
TCGA.AA.3941	4	84957800	84962652	3	-7.4138	LARGE-LOSS	FOCAL	0	None
TCGA.4N.A93T	4	85416442	85438598	4	-6.8865	LARGE-LOSS	FOCAL	1	NKX6-1
TCGA.AA.A01K.01A	4	85611611	85612752	2	-5.3917	LARGE-LOSS	FOCAL	1	WDFY3
TCGA.AA.3941	4	86195189	86196660	3	-7.491	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	87808864	87812600	3	-2.4151	LARGE-LOSS	FOCAL	1	C4orf36
TCGA.CK.5914.01A	4	87808864	87812600	3	-1.4262	LARGE-LOSS	FOCAL	1	C4orf36
TCGA.AG.3909.01A	4	87808864	87928481	4	-1.7534	LARGE-LOSS	FOCAL	2	"AFF1,C4orf36"
TCGA.A6.3808.01A	4	88533220	88537574	6	-3.5723	LARGE-LOSS	FOCAL	1	DSPP
TCGA.AA.A01K.01A	4	88578106	88583082	3	-4.3991	LARGE-LOSS	FOCAL	1	DMP1
TCGA.AA.3850	4	88714717	88715258	4	-1.95525	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	88714717	88715258	4	-2.4794	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	88715297	88715820	3	-5.35395	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	88715297	88715820	3	-7.3923	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	89363339	89393508	11	-1.3974	LARGE-LOSS	FOCAL	2	"HERC5,HERC6"
TCGA.AA.A01F.01A	4	89625242	89625637	2	-1.4961	LARGE-LOSS	FOCAL	1	HERC3
TCGA.AA.3982	4	91094930	91109166	4	-2.5124	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.AA.3549	4	91258024	91371415	32	-2.8226	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.AD.6965	4	91287151	91291515	6	-1.6748	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.DY.A1DD	4	91287203	91291515	5	-5.5218	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.G4.6303	4	91287849	91291515	4	-3.6084	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.F4.6460	4	91663722	91772157	35	-2.3438	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.DM.A1D8	4	91907769	91966614	24	-3.935	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.A6.3807	4	91937971	92076287	40	-1.4487	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.DC.6682	4	91966318	91979093	5	-1.8239	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.T9.A92H	4	92051678	92201567	34	-1.5346	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.AA.3877	4	92069250	92076287	4	-2.549	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.CM.6170	4	92141454	92521041	98	-2.0295	LARGE-LOSS	FOCAL	1	CCSER1
TCGA.AA.A01K.01A	4	94750048	94750881	2	-5.0901	LARGE-LOSS	FOCAL	1	ATOH1
TCGA.A6.3808.01A	4	99993490	100006219	7	-2.6542	LARGE-LOSS	FOCAL	1	ADH5
TCGA.AA.A010.01A	4	100789209	100845844	14	-1.482	LARGE-LOSS	FOCAL	3	"DAPP1,DNAJB14,LAMTOR3"
TCGA.AA.A00N.01A	4	100803090	101110995	22	-1.4914	LARGE-LOSS	FOCAL	4	"DDIT4L,DNAJB14,H2AFZ,LAMTOR3"
TCGA.AA.A010.01A	4	100851590	100871225	7	-2.9857	LARGE-LOSS	FOCAL	2	"DNAJB14,H2AFZ"
TCGA.AG.A016.01A	4	101108806	101110995	2	-1.6271	LARGE-LOSS	FOCAL	1	DDIT4L
TCGA.EI.6513	4	102056662	102192341	66	-3.7793	LARGE-LOSS	FOCAL	1	PPP3CA
TCGA.AA.3941	4	102852285	102937195	22	-1.8503	LARGE-LOSS	FOCAL	1	BANK1
TCGA.A6.3808.01A	4	103806326	103870374	8	-3.5311	LARGE-LOSS	FOCAL	2	"CISD2,SLC9B1"
TCGA.AA.A00D.01A	4	104031933	104084282	29	-1.3247	LARGE-LOSS	FOCAL	1	CENPE
TCGA.4N.A93T	4	104209285	104242363	8	-6.3488	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3681	4	104485516	104487360	3	-2.295	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D7	4	104675197	104675511	3	-1.3554	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56N	4	105720366	105779463	11	-5.1369	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	107246095	107252777	4	-1.8923	LARGE-LOSS	FOCAL	1	AIMP1
TCGA.AA.3982	4	108101481	108104368	4	-6.4421	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	108101481	108109893	7	-6.7723	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	109084676	109088664	3	-2.0396	LARGE-LOSS	FOCAL	1	LEF1
TCGA.AG.A02G.01A	4	109663593	109664892	2	-5.8341	LARGE-LOSS	FOCAL	1	ETNPPL
TCGA.AG.3909.01A	4	109663593	109683881	13	-1.396	LARGE-LOSS	FOCAL	1	ETNPPL
TCGA.AA.3844	4	110087964	110088478	3	-2.4497	LARGE-LOSS	FOCAL	1	COL25A1
TCGA.AG.3909.01A	4	110603691	110639776	13	-1.8041	LARGE-LOSS	FOCAL	3	"CASP6,CCDC109B,PLA2G12A"
TCGA.AA.3982	4	111731935	111732847	6	-3.6734	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	112419558	112419906	3	-7.83435	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	112419688	112420308	3	-7.1155	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	112530028	112562713	14	-1.77905	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	114021092	114023524	9	-1.72565	LARGE-LOSS	FOCAL	1	ANK2
TCGA.AA.3850	4	114421711	114425625	3	-3.15685	LARGE-LOSS	FOCAL	1	CAMK2D
TCGA.AA.A02F.01A	4	115760506	115997163	10	-3.1033	LARGE-LOSS	FOCAL	1	NDST4
TCGA.AA.3850	4	117861978	117863744	9	-5.31805	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6538	4	118665450	118666422	3	-4.3672	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	120527834	120549628	3	-2.1737	LARGE-LOSS	FOCAL	1	PDE5A
TCGA.DC.4749	4	121514771	121711827	64	-1.3665	LARGE-LOSS	FOCAL	1	PRDM5
TCGA.D5.6898	4	122281972	122285134	3	-3.6501	LARGE-LOSS	FOCAL	1	QRFPR
TCGA.AG.3909.01A	4	123301178	123304907	3	-1.4714	LARGE-LOSS	FOCAL	1	ADAD1
TCGA.AA.3844	4	125324956	125326844	3	-2.9294	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3930.01A	4	125631108	126241210	5	-1.3794	LARGE-LOSS	FOCAL	2	"ANKRD50,FAT4"
TCGA.AA.3844	4	126429270	126448703	15	-1.4616	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	4	127183560	127184204	3	-7.0658	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	128956841	129012492	6	-1.8574	LARGE-LOSS	FOCAL	1	LARP1B
TCGA.CK.5914.01A	4	128996041	129012492	5	-1.3871	LARGE-LOSS	FOCAL	1	LARP1B
TCGA.AA.3850	4	130723721	130805358	23	-2.69385	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	130747070	130761096	9	-5.6736	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	4	130758569	130761096	5	-5.5892	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	133769433	133783205	12	-4.00405	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	134071269	135121410	7	-1.339	LARGE-LOSS	FOCAL	2	"PABPC4L,PCDH10"
TCGA.AG.A01Y	4	134489573	134489851	3	-7.6689	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	4	134716967	134718386	4	-2.8726	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2686	4	134975008	134975712	3	-1.5049	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6506	4	135096168	135137298	6	-3.4075	LARGE-LOSS	FOCAL	1	PABPC4L
TCGA.AA.3982	4	141359003	141362550	3	-2.5387	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	142143474	142154830	8	-1.9038	LARGE-LOSS	FOCAL	1	ZNF330
TCGA.AG.4021	4	143076849	143243149	60	-3.39	LARGE-LOSS	FOCAL	1	INPP4B
TCGA.CM.6675	4	143081070	143082303	3	-8.0658	LARGE-LOSS	FOCAL	1	INPP4B
TCGA.AA.3850	4	143081957	143085645	3	-7.76265	LARGE-LOSS	FOCAL	1	INPP4B
TCGA.CM.6675	4	143473647	143498743	10	-3.3523	LARGE-LOSS	FOCAL	1	INPP4B
TCGA.4N.A93T	4	144823571	145031840	24	-5.969	LARGE-LOSS	FOCAL	3	"GYPA,GYPB,GYPE"
TCGA.D5.6531	4	146586213	146883384	77	-1.3667	LARGE-LOSS	FOCAL	2	"C4orf51,ZNF827"
TCGA.AA.A00N.01A	4	146601337	146653554	6	-1.5765	LARGE-LOSS	FOCAL	1	C4orf51
TCGA.AG.3909.01A	4	146617648	146653554	5	-1.4779	LARGE-LOSS	FOCAL	1	C4orf51
TCGA.AA.A00N.01A	4	146859452	147110690	4	-1.4212	LARGE-LOSS	FOCAL	2	"LSM6,ZNF827"
TCGA.AA.3850	4	149733668	149734384	3	-7.19445	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	150089887	150195962	20	-2.6058	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	150119279	150125959	5	-6.24685	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	150626460	150628346	3	-5.21685	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3860	4	151379426	151668145	34	-2.3484	LARGE-LOSS	FOCAL	2	"LRBA,MAB21L2"
TCGA.G4.6299	4	152756908	152854257	67	-1.5297	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3532	4	152791532	152791912	3	-4.0137	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6854	4	152791532	152791912	3	-6.8661	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	154476069	154486427	5	-1.7778	LARGE-LOSS	FOCAL	1	KIAA0922
TCGA.AA.3530	4	156187524	156187923	3	-8.2284	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	156289636	156296916	4	-1.3464	LARGE-LOSS	FOCAL	1	MAP9
TCGA.AF.6136	4	156408672	156435008	11	-2.3605	LARGE-LOSS	FOCAL	0	None
TCGA.CL.4957	4	157528079	157528983	3	-3.934	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2671	4	158552972	158561858	3	-2.197	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3494	4	159676436	159729793	8	-1.3525	LARGE-LOSS	FOCAL	1	FNIP2
TCGA.DY.A1DD	4	160715824	160724785	3	-4.2593	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6155	4	161052773	161068082	5	-1.4947	LARGE-LOSS	FOCAL	0	None
TCGA.AF.5654	4	161678538	161681643	3	-4.2046	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	163358336	163381644	9	-5.72075	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	163359225	163362278	3	-8.3701	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	164054269	164392956	13	-1.4616	LARGE-LOSS	FOCAL	4	"NAF1,NPY1R,NPY5R,TKTL2"
TCGA.AA.A010.01A	4	166128944	166159881	5	-2.2093	LARGE-LOSS	FOCAL	1	KLHL2
TCGA.DM.A28A	4	168617512	168617968	3	-4.6436	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	170926694	171010732	14	-2.1796	LARGE-LOSS	FOCAL	2	"AADAT,MFAP3L"
TCGA.AA.3850	4	171640682	171657777	9	-5.06235	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	174235092	174449889	14	-1.6249	LARGE-LOSS	FOCAL	5	"GALNT7,HAND2,HMGB2,SAP30,SCRG1"
TCGA.CA.5254	4	174991777	176146235	331	-2.9211	LARGE-LOSS	FOCAL	5	"ADAM29,CEP44,FBXO8,GLRA3,HPGD"
TCGA.DM.A1D6	4	175300778	175303329	3	-6.7357	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4682	4	175631710	175637711	4	-1.3963	LARGE-LOSS	FOCAL	1	GLRA3
TCGA.AA.A00N.01A	4	177243256	177249309	4	-1.748	LARGE-LOSS	FOCAL	1	SPCS3
TCGA.AA.A00N.01A	4	178352825	178361389	8	-1.454	LARGE-LOSS	FOCAL	1	AGA
TCGA.AA.3850	4	178869369	178926023	18	-2.82755	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	4	178909909	178924609	9	-4.5485	LARGE-LOSS	FOCAL	0	None
TCGA.CA.5254	4	178944244	180621779	587	-2.8491	LARGE-LOSS	FOCAL	0	None
TCGA.4T.AA8H	4	181137133	181138324	3	-4.1914	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A50T	4	181137133	181138324	3	-7.2632	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1HA	4	182093383	182147804	28	-8.0505	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AAT5	4	182383892	183232418	424	-1.7372	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	4	182592274	182593577	5	-1.8326	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	4	182783182	182784720	3	-3.3322	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3980.01A	4	183063607	183090388	2	-1.7073	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	4	183656348	183657681	3	-2.18185	LARGE-LOSS	FOCAL	1	TENM3
TCGA.AA.A010.01A	4	183696034	183836566	10	-1.8734	LARGE-LOSS	FOCAL	2	"DCTD,TENM3"
TCGA.AG.A01Y	4	183746486	183759049	3	-7.3706	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	184366651	184598559	17	-1.3719	LARGE-LOSS	FOCAL	4	"CDKN2AIP,ING2,RWDD4,TRAPPC11"
TCGA.AA.A00L.01A	4	185012318	185350084	16	-2.3407	LARGE-LOSS	FOCAL	2	"ENPP6,IRF2"
TCGA.AG.3612	4	185023240	185359277	192	-1.7182	LARGE-LOSS	FOCAL	2	"ENPP6,IRF2"
TCGA.CM.6679	4	185121715	185123649	3	-4.48325	LARGE-LOSS	FOCAL	1	ENPP6
TCGA.AA.3980.01A	4	185138695	185587039	20	-1.4723	LARGE-LOSS	FOCAL	4	"CASP3,ENPP6,IRF2,PRIMPOL"
TCGA.AA.3509.01A	4	185556396	185606511	11	-1.5395	LARGE-LOSS	FOCAL	2	"CASP3,PRIMPOL"
TCGA.AA.A01I.01A	4	185683512	185687739	5	-2.7104	LARGE-LOSS	FOCAL	1	ACSL1
TCGA.AG.A01N.01A	4	185686995	185687739	2	-5.2824	LARGE-LOSS	FOCAL	1	ACSL1
TCGA.DM.A28A	4	185893985	185906872	8	-4.7578	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	4	186064479	186179990	11	-1.9212	LARGE-LOSS	FOCAL	3	"CFAP97,SLC25A4,SNX25"
TCGA.AG.A00H.01A	4	186321130	186321493	2	-4.6089	LARGE-LOSS	FOCAL	2	"ANKRD37,UFSP2"
TCGA.AA.A010.01A	4	186997753	187078679	9	-2.0575	LARGE-LOSS	FOCAL	2	"FAM149A,TLR3"
TCGA.AA.A017.01A	4	187117118	187118625	3	-2.4133	LARGE-LOSS	FOCAL	1	CYP4V2
TCGA.AA.3666	4	187581475	187708421	47	-2.1114	LARGE-LOSS	FOCAL	1	FAT1
TCGA.A6.3808.01A	4	187584433	190947494	36	-1.5442	LARGE-LOSS	FOCAL	6	"FAT1,FRG1,FRG2,TRIML1,TRIML2,ZFP42"
TCGA.AA.3850	4	188608513	188623954	7	-1.44765	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	4	189297697	189304961	5	-1.4502	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3581	4	189300295	189300722	3	-4.2513	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3866	4	190545358	190560238	3	-2.2821	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	5	140393	205371	19	-1.3356	LARGE-LOSS	FOCAL	3	"CCDC127,LRRC14B,PLEKHG4B"
TCGA.A6.3808.01A	5	216794	314500	21	-2.924	LARGE-LOSS	FOCAL	4	"AHRR,CCDC127,PDCD6,SDHA"
TCGA.AA.A010.01A	5	447601	488382	23	-2.0807	LARGE-LOSS	FOCAL	2	"EXOC3,SLC9A3"
TCGA.EI.6885	5	806224	852565	3	-5.5196	LARGE-LOSS	FOCAL	1	ZDHHC11
TCGA.AG.3909.01A	5	814794	840558	7	-1.7266	LARGE-LOSS	FOCAL	1	ZDHHC11
TCGA.AA.A00N.01A	5	886678	915962	19	-1.6557	LARGE-LOSS	FOCAL	2	"BRD9,TRIP13"
TCGA.AG.3612	5	1011148	1054830	7	-5.6521	LARGE-LOSS	FOCAL	2	"NKD2,SLC12A7"
TCGA.AA.A010.01A	5	1322911	1344745	13	-2.0141	LARGE-LOSS	FOCAL	1	CLPTM1L
TCGA.DC.6157	5	1635898	1639102	4	-3.8777	LARGE-LOSS	FOCAL	0	None
TCGA.A6.4105	5	2342313	2353619	3	-6.6716	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3854	5	2342313	2353619	3	-7.2711	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3994	5	2342313	2353619	3	-3.9123	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	5	2747617	5146226	14	-2.1867	LARGE-LOSS	FOCAL	4	"ADAMTS16,C5orf38,IRX1,IRX2"
TCGA.5M.AAT5	5	3268905	3269777	3	-1.3229	LARGE-LOSS	FOCAL	0	None
TCGA.QG.A5YV	5	3269777	3269985	3	-7.4085	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	3552596	3558523	4	-1.43565	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	3558523	3559972	4	-1.4199	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5665	5	3645164	3649048	5	-8.8178	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2692	5	4671382	4671597	3	-4.0372	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	5154214	5155356	5	-1.7734	LARGE-LOSS	FOCAL	1	ADAMTS16
TCGA.AA.3982	5	5749768	5750572	3	-1.5605	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	7816947	7886681	21	-1.4654	LARGE-LOSS	FOCAL	4	"ADCY2,C5orf49,FASTKD3,MTRR"
TCGA.AG.3909.01A	5	7861244	7878042	11	-1.3483	LARGE-LOSS	FOCAL	2	"FASTKD3,MTRR"
TCGA.CM.5861	5	7902524	7913667	3	-4.4233	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A020	5	7930700	7931280	4	-1.3716	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	8444204	8447234	10	-2.3012	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	8602352	8610331	2	-1.947	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	8676478	8681627	4	-1.5528	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5348	5	8702521	8722290	3	-4.6688	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A029.01A	5	10254186	10258186	4	-2.8802	LARGE-LOSS	FOCAL	1	CCT5
TCGA.AA.A02E.01A	5	10461298	10464913	2	-3.769	LARGE-LOSS	FOCAL	1	ROPN1L
TCGA.CM.4746	5	10527642	10531756	3	-8.938	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AATA	5	11349694	11353100	3	-1.5869	LARGE-LOSS	FOCAL	1	CTNND2
TCGA.AA.A010.01A	5	11364777	11412063	5	-1.9995	LARGE-LOSS	FOCAL	1	CTNND2
TCGA.AA.3850	5	13867461	13870581	7	-1.33135	LARGE-LOSS	FOCAL	1	DNAH5
TCGA.AA.A02J.01A	5	14363789	14364717	2	-7.7753	LARGE-LOSS	FOCAL	1	TRIO
TCGA.AA.A010.01A	5	14462814	14474074	5	-1.915	LARGE-LOSS	FOCAL	1	TRIO
TCGA.AA.A00N.01A	5	14462814	14485172	12	-1.8119	LARGE-LOSS	FOCAL	1	TRIO
TCGA.AA.A010.01A	5	14476936	14485172	7	-2.9207	LARGE-LOSS	FOCAL	1	TRIO
TCGA.AA.A02H.01A	5	14485172	14498579	6	-3.0132	LARGE-LOSS	FOCAL	1	TRIO
TCGA.AA.A010.01A	5	14487526	14504465	8	-1.9899	LARGE-LOSS	FOCAL	1	TRIO
TCGA.AA.A02W.01A	5	14497869	14498191	2	-5.0513	LARGE-LOSS	FOCAL	1	TRIO
TCGA.AA.A010.01A	5	14673701	14692912	6	-1.4338	LARGE-LOSS	FOCAL	1	OTULIN
TCGA.AA.3977	5	15329892	15333852	5	-1.5987	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	5	15329892	15338344	13	-3.2048	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	5	15330091	15334513	6	-1.6597	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3494	5	15719349	15720477	5	-4.5081	LARGE-LOSS	FOCAL	1	FBXL7
TCGA.AA.A010.01A	5	17275294	17276861	4	-2.5729	LARGE-LOSS	FOCAL	1	BASP1
TCGA.AA.A00N.01A	5	17276399	17276861	3	-2.2603	LARGE-LOSS	FOCAL	1	BASP1
TCGA.AA.3848	5	17508438	17602801	3	-3.9203	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3681	5	21564935	21567035	3	-4.203	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4682	5	23457591	23461023	3	-1.7103	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01Y	5	26266262	26267716	3	-1.4236	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6507	5	27525389	27528613	4	-1.7004	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1DA	5	27619469	27632263	3	-1.4551	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6507	5	28738382	28751608	5	-1.3569	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	31520140	31520708	3	-1.71515	LARGE-LOSS	FOCAL	1	DROSHA
TCGA.AG.A02N	5	34221618	34266576	3	-3.6445	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	5	34346021	34360187	3	-6.6707	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	34374546	34393692	5	-3.5752	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	5	34392448	34393692	3	-2.446	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	5	34392448	34393692	3	-4.4489	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	5	34896780	34915792	7	-1.5551	LARGE-LOSS	FOCAL	2	"RAD1,TTC23L"
TCGA.A6.3808.01A	5	34908828	34945801	22	-1.7704	LARGE-LOSS	FOCAL	3	"BRIX1,DNAJC21,RAD1"
TCGA.AA.A029.01A	5	34914752	34915792	2	-4.796	LARGE-LOSS	FOCAL	1	RAD1
TCGA.AA.A010.01A	5	34918452	34925328	7	-2.8286	LARGE-LOSS	FOCAL	1	BRIX1
TCGA.AA.A010.01A	5	34929876	34945801	9	-2.3334	LARGE-LOSS	FOCAL	1	DNAJC21
TCGA.AA.A010.01A	5	34949616	34950258	2	-1.5579	LARGE-LOSS	FOCAL	1	DNAJC21
TCGA.AA.3982	5	35585287	35588056	6	-1.4931	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	36178292	36208311	12	-2.68825	LARGE-LOSS	FOCAL	2	"NADK2,SKP2"
TCGA.AA.3941	5	36201310	36206827	4	-5.9634	LARGE-LOSS	FOCAL	1	NADK2
TCGA.AA.A010.01A	5	36207233	36262001	15	-2.311	LARGE-LOSS	FOCAL	2	"NADK2,RANBP3L"
TCGA.AA.3982	5	36255363	36256814	3	-2.7323	LARGE-LOSS	FOCAL	1	RANBP3L
TCGA.AA.A010.01A	5	36265009	36268236	3	-1.432	LARGE-LOSS	FOCAL	1	RANBP3L
TCGA.AA.3941	5	36976957	36982647	3	-1.8773	LARGE-LOSS	FOCAL	1	NIPBL
TCGA.AA.A00N.01A	5	37000495	37020513	14	-1.5802	LARGE-LOSS	FOCAL	1	NIPBL
TCGA.A6.3808.01A	5	37186341	37392085	60	-1.4959	LARGE-LOSS	FOCAL	3	"C5orf42,NUP155,WDR70"
TCGA.AA.A00N.01A	5	37238927	37303344	14	-1.6258	LARGE-LOSS	FOCAL	2	"C5orf42,NUP155"
TCGA.CK.5914.01A	5	37244429	37299503	8	-1.3269	LARGE-LOSS	FOCAL	2	"C5orf42,NUP155"
TCGA.AA.A010.01A	5	38527240	38886124	9	-1.3947	LARGE-LOSS	FOCAL	2	"LIFR,OSMR"
TCGA.AG.3612	5	38596721	38597368	3	-9.4809	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	40691832	40764599	7	-1.5276	LARGE-LOSS	FOCAL	3	"PRKAA1,PTGER4,TTC33"
TCGA.AA.A010.01A	5	40716200	40730348	3	-1.8397	LARGE-LOSS	FOCAL	1	TTC33
TCGA.AA.A017.01A	5	40834257	40835227	3	-2.2739	LARGE-LOSS	FOCAL	1	RPL37
TCGA.AA.3850	5	42242541	42276083	12	-3.11425	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	43039519	43139230	4	-1.5464	LARGE-LOSS	FOCAL	2	"ANXA2R,ZNF131"
TCGA.AG.3909.01A	5	43486966	43615913	25	-1.4508	LARGE-LOSS	FOCAL	3	"C5orf34,NNT,PAIP1"
TCGA.AA.A00N.01A	5	43486966	43624082	28	-1.7439	LARGE-LOSS	FOCAL	3	"C5orf34,NNT,PAIP1"
TCGA.AG.4009.01A	5	43494557	43555885	16	-1.3621	LARGE-LOSS	FOCAL	2	"C5orf34,PAIP1"
TCGA.AA.3982	5	46061984	46328444	11	-3.8652	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	46096886	46099552	5	-7.56285	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	5	46096886	46328444	10	-7.3589	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	52352832	52358886	4	-1.5962	LARGE-LOSS	FOCAL	1	ITGA2
TCGA.AA.A00N.01A	5	52394387	52781763	14	-1.3585	LARGE-LOSS	FOCAL	2	"FST,MOCS2"
TCGA.AA.A01C.01A	5	52397890	52404315	3	-2.4054	LARGE-LOSS	FOCAL	1	MOCS2
TCGA.AA.A010.01A	5	52776566	52781763	7	-2.767	LARGE-LOSS	FOCAL	1	FST
TCGA.AA.3850	5	53456265	53463907	7	-1.54885	LARGE-LOSS	FOCAL	1	ARL15
TCGA.AA.A010.01A	5	53813782	53838982	4	-1.3584	LARGE-LOSS	FOCAL	1	SNX18
TCGA.AA.3850	5	53971659	53985568	4	-1.46185	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	5	54455974	54468711	6	-1.9821	LARGE-LOSS	FOCAL	2	"CDC20B,GPX8"
TCGA.CM.5341	5	55793128	55796226	3	-3.2059	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	56207008	56255129	18	-1.3864	LARGE-LOSS	FOCAL	2	"MIER3,SETD9"
TCGA.AA.A010.01A	5	56218937	56255129	13	-2.4796	LARGE-LOSS	FOCAL	2	"MIER3,SETD9"
TCGA.AA.A00N.01A	5	57750359	57754535	8	-2.0525	LARGE-LOSS	FOCAL	1	PLK2
TCGA.CK.5914.01A	5	57750359	57754535	8	-1.3858	LARGE-LOSS	FOCAL	1	PLK2
TCGA.AA.3517	5	58676327	58677015	3	-1.5211	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.AA.3692	5	58676327	58677498	4	-1.6545	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.CA.5797	5	58772630	59088126	88	-2.2907	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.DM.A1DB	5	58900193	59000015	34	-3.5565	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.A6.2683	5	59140599	59606319	108	-2.1466	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.AG.A026	5	59141503	59257170	37	-5.7298	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.DC.6682	5	59165422	59208797	15	-1.7025	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.AA.3488	5	59191611	59230406	8	-4.3772	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.AZ.4614	5	59223239	59393356	37	-4.673	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.AF.2689	5	59234557	59414135	34	-1.515	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.AG.3898	5	59311462	59321830	3	-4.8719	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.DM.A28H	5	59477397	59622391	36	-1.697	LARGE-LOSS	FOCAL	1	PDE4D
TCGA.AA.A00N.01A	5	61684782	61699038	9	-1.4327	LARGE-LOSS	FOCAL	1	DIMT1
TCGA.AA.A00N.01A	5	61800424	61821921	4	-1.6675	LARGE-LOSS	FOCAL	1	IPO11
TCGA.AY.A71X	5	62788274	62819868	6	-4.7195	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	63507883	63513119	3	-1.4182	LARGE-LOSS	FOCAL	1	RNF180
TCGA.AA.3850	5	63598076	63603539	3	-7.27665	LARGE-LOSS	FOCAL	1	RNF180
TCGA.AG.3882	5	63874918	63878802	3	-5.7793	LARGE-LOSS	FOCAL	1	RGS7BP
TCGA.AA.A00N.01A	5	65000059	65016488	4	-1.486	LARGE-LOSS	FOCAL	1	SGTB
TCGA.AG.A02X.01A	5	66458405	66461155	4	-2.9191	LARGE-LOSS	FOCAL	1	MAST4
TCGA.AA.A00N.01A	5	68487572	68505514	8	-1.7097	LARGE-LOSS	FOCAL	1	CENPH
TCGA.AG.A008.01A	5	69372297	69372765	2	-1.6551	LARGE-LOSS	FOCAL	2	"SMN1,SMN2"
TCGA.AZ.4684.01A	5	69717514	69729971	4	-5.2686	LARGE-LOSS	FOCAL	0	None
TCGA.CM.4744.01A	5	70331452	70405019	11	-1.4541	LARGE-LOSS	FOCAL	1	GTF2H2
TCGA.CM.6165.01A	5	70375587	70388857	2	-2.3141	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	70680531	70704358	4	-2.23285	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A023.01A	5	70761874	70766191	3	-2.3429	LARGE-LOSS	FOCAL	1	BDP1
TCGA.CK.5914.01A	5	70811869	70855781	17	-1.3801	LARGE-LOSS	FOCAL	1	BDP1
TCGA.AA.A00N.01A	5	70813121	70852691	15	-1.8392	LARGE-LOSS	FOCAL	1	BDP1
TCGA.AG.3909.01A	5	70837264	70848962	7	-1.6394	LARGE-LOSS	FOCAL	1	BDP1
TCGA.AA.A010.01A	5	72144165	72161375	5	-2.4599	LARGE-LOSS	FOCAL	1	TNPO1
TCGA.AG.A01J.01A	5	72865275	72868273	3	-2.6509	LARGE-LOSS	FOCAL	1	UTP15
TCGA.AA.A010.01A	5	74134751	74137323	3	-1.4586	LARGE-LOSS	FOCAL	1	FAM169A
TCGA.AG.A023.01A	5	74638401	74640016	3	-1.9215	LARGE-LOSS	FOCAL	1	HMGCR
TCGA.AA.3941	5	75235543	75302241	41	-1.4427	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	75240115	75302691	36	-1.49865	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	75349307	75357478	3	-1.3956	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	5	75924973	75926356	3	-2.1981	LARGE-LOSS	FOCAL	1	IQGAP2
TCGA.AA.3850	5	75926277	75927634	6	-1.41385	LARGE-LOSS	FOCAL	1	IQGAP2
TCGA.AA.A00N.01A	5	76330196	76344698	7	-2.276	LARGE-LOSS	FOCAL	1	AGGF1
TCGA.A6.3808.01A	5	76330196	76358895	13	-2.1549	LARGE-LOSS	FOCAL	1	AGGF1
TCGA.AA.A010.01A	5	76330196	76358895	13	-2.9776	LARGE-LOSS	FOCAL	1	AGGF1
TCGA.AA.A00N.01A	5	76348484	76358895	6	-1.4846	LARGE-LOSS	FOCAL	1	AGGF1
TCGA.AA.3982	5	76825831	76826793	3	-2.2107	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	77424061	77425786	5	-1.534	LARGE-LOSS	FOCAL	1	AP3B1
TCGA.CK.5914.01A	5	78411543	78426724	7	-1.3491	LARGE-LOSS	FOCAL	1	BHMT
TCGA.AG.A023.01A	5	79084753	79086741	2	-3.6636	LARGE-LOSS	FOCAL	1	CMYA5
TCGA.AA.A02F.01A	5	79368052	79369028	2	-5.6231	LARGE-LOSS	FOCAL	1	THBS4
TCGA.AA.A02F.01A	5	80502618	80503017	2	-4.6247	LARGE-LOSS	FOCAL	1	RASGRF2
TCGA.AG.3742	5	84540031	84546704	3	-1.4433	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3681	5	84592067	84595117	3	-3.8936	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3968	5	88839687	88843804	3	-6.892	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	89206609	89245336	14	-3.90145	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	90667169	90678651	8	-2.2672	LARGE-LOSS	FOCAL	1	ARRDC3
TCGA.AA.A010.01A	5	90667169	92929251	11	-2.7082	LARGE-LOSS	FOCAL	2	"ARRDC3,NR2F1"
TCGA.AG.4009.01A	5	90667169	92956666	12	-1.3758	LARGE-LOSS	FOCAL	3	"ARRDC3,FAM172A,NR2F1"
TCGA.AA.3967.01A	5	92920723	93300099	11	-1.584	LARGE-LOSS	FOCAL	3	"FAM172A,NR2F1,POU5F2"
TCGA.A6.3808.01A	5	93872663	93999438	12	-1.8105	LARGE-LOSS	FOCAL	2	"ANKRD32,KIAA0825"
TCGA.AA.A00N.01A	5	94987916	94999608	6	-1.5844	LARGE-LOSS	FOCAL	2	"RFESD,SPATA9"
TCGA.AA.3850	5	95797863	95804413	6	-3.45745	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	95873798	95875163	3	-2.73585	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02F.01A	5	96064789	96066433	3	-4.7381	LARGE-LOSS	FOCAL	1	CAST
TCGA.AA.3941	5	97050099	97099319	18	-4.0095	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1H8	5	97050099	97099319	19	-4.4603	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6161	5	97050692	97099319	16	-1.8062	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A017.01A	5	98229093	98230244	2	-1.7919	LARGE-LOSS	FOCAL	1	CHD1
TCGA.AA.3977	5	98922898	98926490	3	-4.4562	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3496	5	99317039	99446038	31	-3.3132	LARGE-LOSS	FOCAL	0	None
TCGA.CA.6715	5	99459597	99535208	14	-5.8701	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	5	99484501	99565566	16	-3.7358	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	101811378	102202936	6	-1.338	LARGE-LOSS	FOCAL	2	"PAM,SLCO6A1"
TCGA.AA.A00N.01A	5	102465282	102489504	10	-1.4031	LARGE-LOSS	FOCAL	1	PPIP5K2
TCGA.DM.A28K	5	103705505	103774111	21	-5.1332	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D6	5	104543130	104641866	28	-5.3082	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DG	5	106187756	106909497	284	-5.7918	LARGE-LOSS	FOCAL	1	EFNA5
TCGA.G5.6235	5	106644403	106645958	3	-4.1268	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	108672892	108691569	4	-1.946	LARGE-LOSS	FOCAL	1	PJA2
TCGA.AA.A010.01A	5	108672892	108691569	4	-2.1328	LARGE-LOSS	FOCAL	1	PJA2
TCGA.DM.A280	5	108951806	108964098	3	-4.3341	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6901	5	109363571	109375764	10	-2.5559	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AATA	5	110416222	110416859	3	-6.7029	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	110438356	110443280	5	-5.84545	LARGE-LOSS	FOCAL	1	WDR36
TCGA.AA.3850	5	110523898	110526636	3	-7.50945	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	110668415	110679872	5	-2.22445	LARGE-LOSS	FOCAL	1	CAMK4
TCGA.AA.3850	5	110726971	110728616	5	-1.81395	LARGE-LOSS	FOCAL	1	CAMK4
TCGA.AA.3850	5	110892086	110910653	9	-1.90945	LARGE-LOSS	FOCAL	0	None
TCGA.AG.4008	5	111860954	112116772	119	-1.6914	LARGE-LOSS	FOCAL	1	APC
TCGA.AA.3941	5	113948289	113969330	14	-3.4994	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	113948289	113982230	20	-2.38735	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	5	115506747	115508581	4	-2.7128	LARGE-LOSS	FOCAL	1	COMMD10
TCGA.AA.3850	5	115596276	115629522	18	-1.84835	LARGE-LOSS	FOCAL	1	COMMD10
TCGA.DM.A1D9	5	115783552	115800962	12	-3.5634	LARGE-LOSS	FOCAL	1	SEMA6A
TCGA.AA.3850	5	116830166	116831526	4	-8.00095	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	118842447	118866912	8	-1.5853	LARGE-LOSS	FOCAL	1	HSD17B4
TCGA.AF.5654	5	118960122	118961373	3	-6.8244	LARGE-LOSS	FOCAL	0	None
TCGA.3L.AA1B	5	119015749	119016628	3	-4.2771	LARGE-LOSS	FOCAL	0	None
TCGA.CA.6715	5	119528886	119626547	34	-4.6872	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	5	120977239	120989593	6	-1.3752	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	5	121156776	121157937	3	-1.7341	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	121402352	121411059	5	-1.8829	LARGE-LOSS	FOCAL	1	LOX
TCGA.AA.3844	5	122475778	122476619	3	-1.3399	LARGE-LOSS	FOCAL	1	PRDM6
TCGA.AA.3850	5	122676160	122703025	9	-1.57825	LARGE-LOSS	FOCAL	1	CEP120
TCGA.AA.A00N.01A	5	122748041	122754014	3	-1.7777	LARGE-LOSS	FOCAL	1	CEP120
TCGA.AG.3909.01A	5	122748041	122758567	4	-1.3366	LARGE-LOSS	FOCAL	1	CEP120
TCGA.AA.3850	5	123240428	123249929	3	-2.92865	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	123384297	123453364	19	-2.02925	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	125118517	125118747	3	-8.67305	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	5	125912723	126171849	27	-1.3227	LARGE-LOSS	FOCAL	4	"ALDH7A1,LMNB1,PHAX,TEX43"
TCGA.AA.A02H.01A	5	125918515	126141214	14	-1.4799	LARGE-LOSS	FOCAL	4	"ALDH7A1,LMNB1,PHAX,TEX43"
TCGA.AA.A01C.01A	5	126791065	126792773	2	-2.3283	LARGE-LOSS	FOCAL	1	MEGF10
TCGA.AA.A010.01A	5	126859145	126887350	8	-1.8624	LARGE-LOSS	FOCAL	1	PRRC1
TCGA.NH.A6GC	5	127316739	127317580	3	-5.8735	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	5	131598250	131607432	5	-1.6898	LARGE-LOSS	FOCAL	1	PDLIM4
TCGA.AA.A010.01A	5	131805652	131825041	9	-2.4514	LARGE-LOSS	FOCAL	1	IRF1
TCGA.AA.A00N.01A	5	132061765	132094414	12	-1.5273	LARGE-LOSS	FOCAL	3	"CCNI2,KIF3A,SEPT8"
TCGA.AA.A01C.01A	5	134074269	134076766	2	-3.2368	LARGE-LOSS	FOCAL	1	CAMLG
TCGA.AA.A00N.01A	5	134190614	134245978	14	-1.7119	LARGE-LOSS	FOCAL	3	"C5orf24,PCBD2,TXNDC15"
TCGA.AG.A01W.01A	5	134259834	134273878	3	-1.6267	LARGE-LOSS	FOCAL	1	PCBD2
TCGA.AA.3982	5	135253797	135261331	3	-1.3433	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	137211518	137235163	13	-1.3239	LARGE-LOSS	FOCAL	2	"MYOT,PKD2L2"
TCGA.AA.A01K.01A	5	137513216	137515333	3	-4.7036	LARGE-LOSS	FOCAL	2	"BRD8,KIF20A"
TCGA.AA.A010.01A	5	137759757	137771249	8	-2.1855	LARGE-LOSS	FOCAL	1	KDM3B
TCGA.AA.A010.01A	5	139197006	139245076	19	-2.1019	LARGE-LOSS	FOCAL	2	"NRG2,PSD2"
TCGA.AA.A010.01A	5	139493997	139502935	12	-2.1306	LARGE-LOSS	FOCAL	1	PURA
TCGA.CK.5914.01A	5	139494856	139500919	10	-1.4288	LARGE-LOSS	FOCAL	1	PURA
TCGA.AA.A00N.01A	5	139494856	139507940	17	-2.3361	LARGE-LOSS	FOCAL	2	"IGIP,PURA"
TCGA.AG.A023.01A	5	139495958	139505560	6	-2.4017	LARGE-LOSS	FOCAL	2	"IGIP,PURA"
TCGA.AA.A010.01A	5	139504515	139507940	6	-3.0145	LARGE-LOSS	FOCAL	1	IGIP
TCGA.AA.A010.01A	5	139815642	139828767	6	-1.8477	LARGE-LOSS	FOCAL	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AA.A00N.01A	5	140021853	140062638	40	-1.4078	LARGE-LOSS	FOCAL	6	"DND1,HARS,IK,NDUFA2,TMCO6,WDR55"
TCGA.AG.3909.01A	5	140165824	140175863	6	-1.3234	LARGE-LOSS	FOCAL	2	"PCDHA1,PCDHA2"
TCGA.AG.3909.01A	5	140176218	140236773	25	-2.2232	LARGE-LOSS	FOCAL	10	"PCDHA1,PCDHA10,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.CM.4744.01A	5	140222640	140237299	11	-1.5232	LARGE-LOSS	FOCAL	10	"PCDHA1,PCDHA10,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.AA.A02H.01A	5	140235985	140237299	3	-3.6463	LARGE-LOSS	FOCAL	10	"PCDHA1,PCDHA10,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.AA.3850	5	140629689	140634294	4	-1.74465	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	140998315	141014331	10	-1.43	LARGE-LOSS	FOCAL	2	"DIAPH1,HDAC3"
TCGA.A6.6140	5	141000061	141020099	3	-1.8754	LARGE-LOSS	FOCAL	3	"FCHSD1,HDAC3,RELL2"
TCGA.AG.A023.01A	5	141008069	141009242	3	-2.2825	LARGE-LOSS	FOCAL	1	HDAC3
TCGA.AA.A00N.01A	5	141353124	141391428	13	-1.4811	LARGE-LOSS	FOCAL	2	"GNPDA1,RNF14"
TCGA.AA.A010.01A	5	141357820	141391428	11	-2.2932	LARGE-LOSS	FOCAL	2	"GNPDA1,RNF14"
TCGA.AG.4009.01A	5	141381547	141391428	6	-1.4515	LARGE-LOSS	FOCAL	1	GNPDA1
TCGA.A6.2675	5	143130708	143138378	3	-5.009	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6167	5	145060736	145080339	3	-1.4781	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3527	5	148690915	148694416	3	-4.1254	LARGE-LOSS	FOCAL	1	AFAP1L1
TCGA.A6.3808.01A	5	149740650	149778498	22	-1.9301	LARGE-LOSS	FOCAL	1	TCOF1
TCGA.AA.A010.01A	5	149997878	150050007	6	-1.4433	LARGE-LOSS	FOCAL	2	"MYOZ3,SYNPO"
TCGA.AG.4009.01A	5	150027487	150030246	2	-1.4467	LARGE-LOSS	FOCAL	1	SYNPO
TCGA.AA.3850	5	150264413	150277908	3	-4.37315	LARGE-LOSS	FOCAL	1	ZNF300
TCGA.AA.3941	5	150277110	150282783	3	-2.8735	LARGE-LOSS	FOCAL	1	ZNF300
TCGA.AF.4110	5	150387927	150392491	3	-4.2391	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02F.01A	5	150422082	150443126	6	-2.8187	LARGE-LOSS	FOCAL	1	TNIP1
TCGA.AA.3511	5	151515890	151521210	3	-2.502	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3852	5	151515890	151521210	3	-4.2007	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02O	5	151515890	151521210	3	-4.8111	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3560	5	151697439	151699969	4	-7.6519	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	152360180	152361910	3	-3.3064	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56N	5	154505096	154505579	3	-2.9282	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	5	154853296	154876080	23	-2.51355	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	5	154855950	154876080	19	-2.5516	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56N	5	155581128	155583136	3	-8.8098	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	5	156670616	156721731	8	-1.5729	LARGE-LOSS	FOCAL	2	"CYFIP2,ITK"
TCGA.AA.A010.01A	5	157158402	157181870	10	-1.8617	LARGE-LOSS	FOCAL	2	"LSM11,THG1L"
TCGA.AA.3982	5	157646222	157646613	5	-1.6036	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	5	157685056	157694865	3	-1.9567	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	5	157685056	157694865	3	-6.6676	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6931	5	157891877	157893359	4	-3.6521	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	5	158588256	158621684	8	-2.914	LARGE-LOSS	FOCAL	1	RNF145
TCGA.AA.A010.01A	5	158608916	158634688	4	-2.4631	LARGE-LOSS	FOCAL	1	RNF145
TCGA.AA.3941	5	162379711	162384063	3	-7.3906	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	162938958	162945152	6	-1.4377	LARGE-LOSS	FOCAL	1	MAT2B
TCGA.AA.3811	5	166918857	166920757	3	-6.8823	LARGE-LOSS	FOCAL	1	TENM2
TCGA.AA.3941	5	166918857	166920757	3	-7.2457	LARGE-LOSS	FOCAL	1	TENM2
TCGA.AA.3982	5	166918857	166920757	3	-7.1099	LARGE-LOSS	FOCAL	1	TENM2
TCGA.AA.3941	5	167573384	167574937	3	-1.5138	LARGE-LOSS	FOCAL	1	TENM2
TCGA.AA.A010.01A	5	167924206	167946049	9	-1.9373	LARGE-LOSS	FOCAL	1	RARS
TCGA.AA.3941	5	168978799	168981828	3	-1.9564	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	5	169639750	169640259	4	-4.372	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6625	5	170047604	170048047	3	-2.5375	LARGE-LOSS	FOCAL	1	KCNIP1
TCGA.AA.A00N.01A	5	170816993	170837449	10	-2.0943	LARGE-LOSS	FOCAL	1	NPM1
TCGA.CK.5914.01A	5	170816993	170876101	13	-1.5371	LARGE-LOSS	FOCAL	2	"FGF18,NPM1"
TCGA.AA.A010.01A	5	170818261	170876101	12	-1.4907	LARGE-LOSS	FOCAL	2	"FGF18,NPM1"
TCGA.AA.A02R.01A	5	170827088	170833357	4	-4.4273	LARGE-LOSS	FOCAL	1	NPM1
TCGA.AA.A010.01A	5	171849361	172197124	9	-1.3492	LARGE-LOSS	FOCAL	4	"DUSP1,LOC101928093,NEURL1B,SH3PXD2B"
TCGA.AF.3914.01A	5	172195768	172197124	3	-1.9242	LARGE-LOSS	FOCAL	1	DUSP1
TCGA.AA.A029.01A	5	172196587	172197579	3	-5.8969	LARGE-LOSS	FOCAL	1	DUSP1
TCGA.A6.2686	5	172942260	173020994	65	-1.8263	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2686	5	173021454	173022412	3	-5.8746	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2686	5	173023216	173205499	114	-1.8597	LARGE-LOSS	FOCAL	1	BOD1
TCGA.A6.2686	5	173205606	173206215	3	-9.7841	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2686	5	173206370	173475924	107	-1.766	LARGE-LOSS	FOCAL	3	"C5orf47,CPEB4,HMP19"
TCGA.AA.3941	5	173690808	173695777	3	-3.9094	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6652	5	175346627	175348821	3	-3.7707	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1DB	5	175346627	175348821	3	-7.2953	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	5	175386925	175740368	26	-2.9541	LARGE-LOSS	FOCAL	3	"FAM153B,SIMC1,THOC3"
TCGA.AG.A011.01A	5	175517289	175520147	2	-1.6965	LARGE-LOSS	FOCAL	1	FAM153B
TCGA.AG.A015.01A	5	175517289	175520147	2	-2.0727	LARGE-LOSS	FOCAL	1	FAM153B
TCGA.DM.A28M.01A	5	175536025	175540736	2	-1.9485	LARGE-LOSS	FOCAL	1	FAM153B
TCGA.AA.A010.01A	5	176011124	176053654	13	-2.1439	LARGE-LOSS	FOCAL	3	"CDHR2,GPRIN1,SNCB"
TCGA.G4.6310	5	176139904	176144799	3	-3.9211	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02H.01A	5	176334050	176335482	2	-4.4408	LARGE-LOSS	FOCAL	1	UIMC1
TCGA.AA.A01K.01A	5	176402342	176468727	4	-3.0833	LARGE-LOSS	FOCAL	2	"UIMC1,ZNF346"
TCGA.AF.3914.01A	5	176792877	176798832	8	-1.3644	LARGE-LOSS	FOCAL	1	RGS14
TCGA.AA.A010.01A	5	176792877	176820981	13	-2.2261	LARGE-LOSS	FOCAL	2	"RGS14,SLC34A1"
TCGA.AA.A010.01A	5	176832024	176899064	28	-2.1895	LARGE-LOSS	FOCAL	4	"DBN1,F12,GRK6,PRR7"
TCGA.AA.A010.01A	5	176964853	177036494	12	-1.5257	LARGE-LOSS	FOCAL	3	"B4GALT7,FAM193B,TMED9"
TCGA.AA.3495	5	177058765	177060263	3	-3.5232	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3893	5	177142080	177400247	10	-2.8303	LARGE-LOSS	FOCAL	1	FAM153A
TCGA.A6.3808.01A	5	177151070	177171852	8	-2.7259	LARGE-LOSS	FOCAL	1	FAM153A
TCGA.QG.A5Z1	5	177391445	177394035	3	-7.5639	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	5	177462056	177548112	8	-2.9805	LARGE-LOSS	FOCAL	1	N4BP3
TCGA.AA.A010.01A	5	177577858	177641744	11	-1.3929	LARGE-LOSS	FOCAL	3	"HNRNPAB,NHP2,PHYKPL"
TCGA.AF.3914.01A	5	177632802	177642229	10	-1.4961	LARGE-LOSS	FOCAL	2	"HNRNPAB,PHYKPL"
TCGA.AA.3818	5	177892346	177892955	3	-1.5444	LARGE-LOSS	FOCAL	1	COL23A1
TCGA.AA.A010.01A	5	178408617	178418821	7	-2.0002	LARGE-LOSS	FOCAL	1	GRM6
TCGA.AA.A010.01A	5	178987009	178996262	4	-1.4702	LARGE-LOSS	FOCAL	1	RUFY1
TCGA.CK.5914.01A	5	178989516	179048193	25	-1.3588	LARGE-LOSS	FOCAL	2	"HNRNPH1,RUFY1"
TCGA.AA.A010.01A	5	179028839	179036328	4	-1.6136	LARGE-LOSS	FOCAL	1	RUFY1
TCGA.AA.A010.01A	5	179041810	179050005	10	-2.7823	LARGE-LOSS	FOCAL	1	HNRNPH1
TCGA.AA.A00N.01A	5	179041810	179155542	29	-1.6418	LARGE-LOSS	FOCAL	4	"C5orf60,CANX,CBY3,HNRNPH1"
TCGA.A6.3808.01A	5	179043075	179050005	8	-2.8555	LARGE-LOSS	FOCAL	1	HNRNPH1
TCGA.AA.A010.01A	5	179069292	179252089	37	-1.5723	LARGE-LOSS	FOCAL	7	"C5orf60,CANX,CBY3,LTC4S,MAML1,MGAT4B,SQSTM1"
TCGA.NH.A50U	5	179289894	179296440	3	-4.3277	LARGE-LOSS	FOCAL	1	TBC1D9B
TCGA.AA.A010.01A	5	179315074	179331653	6	-1.7614	LARGE-LOSS	FOCAL	1	TBC1D9B
TCGA.AA.A02H.01A	5	179390421	179405148	4	-1.5	LARGE-LOSS	FOCAL	1	RNF130
TCGA.AA.A010.01A	5	179688662	179731725	7	-1.5338	LARGE-LOSS	FOCAL	2	"GFPT2,MAPK9"
TCGA.CK.5914.01A	5	179743294	179758427	8	-1.4695	LARGE-LOSS	FOCAL	1	GFPT2
TCGA.AA.A010.01A	5	180030142	180058654	23	-2.2231	LARGE-LOSS	FOCAL	1	FLT4
TCGA.A6.3808.01A	5	180043317	180057538	15	-2.5112	LARGE-LOSS	FOCAL	1	FLT4
TCGA.AG.A01W.01A	5	180309470	180362262	6	-1.4942	LARGE-LOSS	FOCAL	1	BTNL8
TCGA.AG.A015.01A	5	180375298	180429620	8	-1.9614	LARGE-LOSS	FOCAL	2	"BTNL3,BTNL8"
TCGA.AA.A02H.01A	5	180419776	180429620	3	-1.8727	LARGE-LOSS	FOCAL	1	BTNL3
TCGA.AA.A010.01A	5	180472461	180485264	9	-2.59	LARGE-LOSS	FOCAL	1	BTNL9
TCGA.AG.3909.01A	5	180625099	180686963	22	-1.5832	LARGE-LOSS	FOCAL	4	"GNB2L1,TRIM41,TRIM52,TRIM7"
TCGA.AA.A01C.01A	5	180668484	180686963	4	-1.3624	LARGE-LOSS	FOCAL	2	"GNB2L1,TRIM52"
TCGA.DM.A1D6	6	203844	205877	4	-3.043	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3866	6	279694	285694	2	-1.8335	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3556	6	279694	303016	3	-2.7336	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.DY.A1DF	6	279694	347165	12	-1.5082	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.AG.3612	6	279694	382896	18	-2.4697	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.A6.6781	6	285694	378702	17	-1.7392	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.AA.3858	6	303120	382558	16	-2.6225	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.AA.A00O.01A	6	304543	348738	6	-2.2043	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.A6.6652	6	315196	323083	3	-1.6312	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.DM.A1DB	6	329868	350370	3	-4.7798	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.AA.3685	6	329868	385686	16	-1.6295	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.AA.3979	6	334824	378702	3	-4.1427	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.DY.A1DF	6	348442	355197	4	-6.0292	LARGE-LOSS	FOCAL	1	DUSP22
TCGA.CM.6679	6	355197	378702	4	-3.96165	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	6	394784	407404	7	-1.979	LARGE-LOSS	FOCAL	1	IRF4
TCGA.AA.A010.01A	6	1312939	1613243	8	-2.6997	LARGE-LOSS	FOCAL	3	"FOXC1,FOXF2,FOXQ1"
TCGA.AD.6895	6	1929595	2123881	61	-1.4621	LARGE-LOSS	FOCAL	1	GMDS
TCGA.AA.3518	6	2021707	2059109	12	-1.355	LARGE-LOSS	FOCAL	1	GMDS
TCGA.AA.3492	6	2055676	2177023	33	-3.6253	LARGE-LOSS	FOCAL	1	GMDS
TCGA.AA.3518	6	2064263	2109880	11	-4.2506	LARGE-LOSS	FOCAL	1	GMDS
TCGA.D5.6530	6	2073378	2095233	3	-4.8242	LARGE-LOSS	FOCAL	1	GMDS
TCGA.AA.3518	6	2112343	2162748	16	-1.3881	LARGE-LOSS	FOCAL	1	GMDS
TCGA.AA.A024.01A	6	2948515	2954779	4	-2.2696	LARGE-LOSS	FOCAL	1	SERPINB6
TCGA.AG.4009.01A	6	3152668	3156238	5	-1.6973	LARGE-LOSS	FOCAL	2	"BPHL,TUBB2A"
TCGA.AA.A01K.01A	6	3225786	3226748	3	-6.4277	LARGE-LOSS	FOCAL	1	TUBB2B
TCGA.AG.3909.01A	6	3723805	3850005	5	-1.3313	LARGE-LOSS	FOCAL	2	"FAM50B,PXDC1"
TCGA.AA.A010.01A	6	4056537	4116067	11	-2.1508	LARGE-LOSS	FOCAL	4	"C6orf201,ECI2,FAM217A,PRPF4B"
TCGA.AA.A00N.01A	6	4060640	4715961	20	-1.4481	LARGE-LOSS	FOCAL	4	"C6orf201,ECI2,FAM217A,PRPF4B"
TCGA.AA.A022	6	4700683	4701143	3	-4.5986	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	4995305	5004073	8	-1.5632	LARGE-LOSS	FOCAL	1	RPP40
TCGA.AG.4015	6	6432363	6432963	3	-1.3737	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3612	6	7225673	7245228	3	-9.4809	LARGE-LOSS	FOCAL	1	RREB1
TCGA.AA.A010.01A	6	7883350	7910720	10	-1.6188	LARGE-LOSS	FOCAL	1	TXNDC5
TCGA.AA.3982	6	8550629	8555117	8	-1.7474	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	6	8740009	8748351	6	-1.8807	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	9932961	10430100	13	-1.509	LARGE-LOSS	FOCAL	1	TFAP2A
TCGA.AH.6544	6	9994365	9994518	3	-2.2199	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6883	6	9994365	9994518	3	-2.8463	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	6	10398633	10430100	10	-1.3676	LARGE-LOSS	FOCAL	1	TFAP2A
TCGA.AA.A00N.01A	6	10703568	10770297	17	-1.3813	LARGE-LOSS	FOCAL	4	"MAK,PAK1IP1,TMEM14B,TMEM14C"
TCGA.AA.A010.01A	6	11094498	11134584	4	-2.3379	LARGE-LOSS	FOCAL	2	"ERVFRD-1,SMIM13"
TCGA.AA.3844	6	11947707	11947954	4	-1.3926	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	6	12015803	12124855	7	-1.4395	LARGE-LOSS	FOCAL	1	HIVEP1
TCGA.AA.A00N.01A	6	13604631	13625838	10	-1.6757	LARGE-LOSS	FOCAL	3	"NOL7,RANBP9,SIRT5"
TCGA.AA.A010.01A	6	16238872	16254741	4	-2.2524	LARGE-LOSS	FOCAL	1	GMPR
TCGA.A6.2678	6	16376949	16377646	3	-5.1503	LARGE-LOSS	FOCAL	1	ATXN1
TCGA.AA.3844	6	16856140	16862984	3	-1.5511	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A03F	6	17100659	17102857	3	-2.8842	LARGE-LOSS	FOCAL	1	STMND1
TCGA.G4.6586	6	17102757	17104431	3	-4.0941	LARGE-LOSS	FOCAL	1	STMND1
TCGA.AA.A010.01A	6	17281766	17291936	4	-2.3339	LARGE-LOSS	FOCAL	1	RBM24
TCGA.AA.A00N.01A	6	17602811	17616728	6	-1.5883	LARGE-LOSS	FOCAL	2	"FAM8A1,NUP153"
TCGA.AA.A00N.01A	6	18236646	18264024	8	-1.3684	LARGE-LOSS	FOCAL	1	DEK
TCGA.AA.A010.01A	6	18237582	18264024	7	-1.596	LARGE-LOSS	FOCAL	1	DEK
TCGA.AA.3982	6	19166836	19167995	3	-1.8588	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	6	20821488	20826280	3	-2.0179	LARGE-LOSS	FOCAL	1	CDKAL1
TCGA.AA.A010.01A	6	21594775	21598379	4	-2.5222	LARGE-LOSS	FOCAL	1	SOX4
TCGA.AA.A00N.01A	6	21596316	21598379	3	-2.0943	LARGE-LOSS	FOCAL	1	SOX4
TCGA.AA.3844	6	22743402	22757653	14	-1.4937	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01S	6	22905316	22905802	3	-1.73095	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5341	6	22905316	22905802	3	-1.5178	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	6	24134505	24146347	4	-1.7145	LARGE-LOSS	FOCAL	1	NRSN1
TCGA.AA.A00N.01A	6	24405336	24423761	10	-2.0037	LARGE-LOSS	FOCAL	1	MRS2
TCGA.A6.6653	6	24429248	24437107	3	-1.4307	LARGE-LOSS	FOCAL	1	GPLD1
TCGA.AA.A00N.01A	6	24650969	24809899	25	-1.39	LARGE-LOSS	FOCAL	6	"ACOT13,C6orf229,C6orf62,FAM65B,GMNN,TDP2"
TCGA.AA.3850	6	25642711	25645361	5	-1.36855	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	6	25862465	25876088	14	-1.7577	LARGE-LOSS	FOCAL	1	SLC17A3
TCGA.AA.A029.01A	6	26501454	26501778	2	-7.0024	LARGE-LOSS	FOCAL	1	BTN1A1
TCGA.A6.6782	6	26825467	26936064	4	-1.4369	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	6	26861037	26936064	3	-3.1578	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	6	27805685	27806388	2	-4.4032	LARGE-LOSS	FOCAL	1	HIST1H2AK
TCGA.AA.A00N.01A	6	28472047	28483381	5	-1.9959	LARGE-LOSS	FOCAL	1	GPX6
TCGA.AG.3909.01A	6	28472047	28483381	5	-1.607	LARGE-LOSS	FOCAL	1	GPX6
TCGA.AA.A029.01A	6	29635332	29635602	2	-5.2898	LARGE-LOSS	FOCAL	1	MOG
TCGA.AG.A026	6	29871635	29896658	6	-7.3548	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3526	6	29871635	29898896	5	-3.6292	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6680	6	29871635	29898896	6	-4.2697	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A8F7	6	29876958	29896658	3	-4.5643	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3561	6	29876958	29898896	5	-6.9271	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	6	30134901	30138722	5	-1.357	LARGE-LOSS	FOCAL	1	TRIM15
TCGA.NH.A8F7	6	30346917	30348246	6	-1.4288	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A029.01A	6	30552979	30554207	4	-2.0839	LARGE-LOSS	FOCAL	1	ABCF1
TCGA.AA.A029.01A	6	30618718	30627777	10	-2.0161	LARGE-LOSS	FOCAL	2	"C6orf136,DHX16"
TCGA.AA.A010.01A	6	30856462	30866614	14	-1.3495	LARGE-LOSS	FOCAL	1	DDR1
TCGA.AG.A02X.01A	6	31110320	31111012	3	-4.7412	LARGE-LOSS	FOCAL	1	CCHCR1
TCGA.CI.6620	6	31280822	31309923	3	-1.8186	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3831	6	31337871	31340432	6	-2.9224	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A004.01A	6	31496740	31498555	4	-3.4732	LARGE-LOSS	FOCAL	2	"DDX39B,MCCD1"
TCGA.AA.A02E.01A	6	31591467	31593531	4	-3.6031	LARGE-LOSS	FOCAL	1	PRRC2A
TCGA.AA.A004.01A	6	31592901	31593531	2	-6.5371	LARGE-LOSS	FOCAL	1	PRRC2A
TCGA.AA.A01D.01A	6	31615326	31616926	3	-5.4506	LARGE-LOSS	FOCAL	1	BAG6
TCGA.A6.3808.01A	6	31727155	31731837	11	-1.9124	LARGE-LOSS	FOCAL	2	"MSH5,SAPCD1"
TCGA.AA.A00N.01A	6	31765511	31807273	11	-1.4137	LARGE-LOSS	FOCAL	5	"C6orf48,HSPA1A,HSPA1B,HSPA1L,LSM2"
TCGA.AA.A00O.01A	6	31827489	31832385	7	-4.28	LARGE-LOSS	FOCAL	2	"NEU1,SLC44A4"
TCGA.AG.A023.01A	6	31828973	31829759	2	-4.1304	LARGE-LOSS	FOCAL	1	NEU1
TCGA.AA.A010.01A	6	31855294	31867651	8	-1.8803	LARGE-LOSS	FOCAL	3	"C2,EHMT2,ZBTB12"
TCGA.AG.4009.01A	6	31856978	31906975	13	-1.3746	LARGE-LOSS	FOCAL	3	"C2,EHMT2,ZBTB12"
TCGA.AG.A02X.01A	6	31921785	31922315	2	-3.4078	LARGE-LOSS	FOCAL	1	NELFE
TCGA.AA.A029.01A	6	31922315	31926087	4	-5.0864	LARGE-LOSS	FOCAL	1	NELFE
TCGA.A6.3808.01A	6	31961970	32012766	19	-2.5617	LARGE-LOSS	FOCAL	6	"C4A,C4B,C4B_2,CYP21A2,STK19,TNXB"
TCGA.AA.3509.01A	6	31994741	31996192	2	-2.5366	LARGE-LOSS	FOCAL	2	"C4B,C4B_2"
TCGA.A6.3808.01A	6	32149982	32156435	7	-1.401	LARGE-LOSS	FOCAL	2	"AGER,PBX2"
TCGA.AA.A01C.01A	6	32166183	32166694	2	-3.3981	LARGE-LOSS	FOCAL	1	NOTCH4
TCGA.CK.5914.01A	6	32485433	32489631	5	-2.5867	LARGE-LOSS	FOCAL	1	HLA-DRB5
TCGA.AA.3850	6	32689323	32693505	8	-1.49985	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	6	32751613	32752138	4	-1.5612	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	6	32814844	32847140	15	-1.3687	LARGE-LOSS	FOCAL	2	"PSMB9,TAP1"
TCGA.CK.5914.01A	6	33053931	33054224	2	-2.4857	LARGE-LOSS	FOCAL	1	HLA-DPB1
TCGA.AG.A01W.01A	6	33249556	33256641	5	-1.599	LARGE-LOSS	FOCAL	1	WDR46
TCGA.AG.A00H.01A	6	33255696	33262689	10	-1.9691	LARGE-LOSS	FOCAL	3	"PFDN6,RGL2,WDR46"
TCGA.AG.A02X.01A	6	33371046	33372578	3	-1.6761	LARGE-LOSS	FOCAL	1	KIFC1
TCGA.AA.A010.01A	6	33377345	33408983	22	-2.1208	LARGE-LOSS	FOCAL	4	"CUTA,KIFC1,PHF1,SYNGAP1"
TCGA.AA.A010.01A	6	34208511	34215172	7	-2.2916	LARGE-LOSS	FOCAL	2	"C6orf1,HMGA1"
TCGA.AA.A010.01A	6	34831767	34855522	10	-1.771	LARGE-LOSS	FOCAL	2	"TAF11,UHRF1BP1"
TCGA.AA.A010.01A	6	35466076	35477391	6	-1.9686	LARGE-LOSS	FOCAL	1	TULP1
TCGA.AA.A010.01A	6	36075204	36177927	15	-1.3329	LARGE-LOSS	FOCAL	3	"BRPF3,MAPK13,MAPK14"
TCGA.AG.3909.01A	6	36945801	36949308	3	-1.634	LARGE-LOSS	FOCAL	1	MTCH1
TCGA.AG.A02X.01A	6	37439550	37440131	2	-3.7584	LARGE-LOSS	FOCAL	1	CMTR1
TCGA.AZ.6599	6	37516597	37518180	3	-1.7221	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02J.01A	6	37612242	37613925	3	-4.6013	LARGE-LOSS	FOCAL	1	MDGA1
TCGA.AA.3850	6	38046094	38052921	4	-1.66625	LARGE-LOSS	FOCAL	1	ZFAND3
TCGA.AA.3850	6	38541483	38542644	3	-1.95335	LARGE-LOSS	FOCAL	1	BTBD9
TCGA.AA.A010.01A	6	38913192	38957761	9	-2.1578	LARGE-LOSS	FOCAL	1	DNAH8
TCGA.QL.A97D	6	39071234	39083287	3	-1.6276	LARGE-LOSS	FOCAL	1	SAYSD1
TCGA.AA.3850	6	39593812	39606634	4	-1.52335	LARGE-LOSS	FOCAL	1	KIF6
TCGA.AA.3967.01A	6	39832146	39836550	4	-1.475	LARGE-LOSS	FOCAL	1	DAAM2
TCGA.AA.3982	6	40014615	40037364	3	-3.8162	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6531	6	40453007	40454935	3	-4.8966	LARGE-LOSS	FOCAL	1	LRFN2
TCGA.AA.A00N.01A	6	41035022	41065033	14	-1.5758	LARGE-LOSS	FOCAL	2	"NFYA,OARD1"
TCGA.AA.A010.01A	6	41470226	41537968	5	-2.0048	LARGE-LOSS	FOCAL	1	FOXP4
TCGA.AA.A010.01A	6	41703795	41705416	3	-2.3841	LARGE-LOSS	FOCAL	2	"PGC,TFEB"
TCGA.AA.A010.01A	6	41707485	41739503	11	-1.6919	LARGE-LOSS	FOCAL	2	"FRS3,PGC"
TCGA.AA.A010.01A	6	41740536	41771493	16	-2.2445	LARGE-LOSS	FOCAL	4	"FRS3,PRICKLE4,TOMM6,USP49"
TCGA.AF.3914.01A	6	41744617	41773368	11	-1.3937	LARGE-LOSS	FOCAL	4	"FRS3,PRICKLE4,TOMM6,USP49"
TCGA.AG.4009.01A	6	41751180	41773368	10	-1.4738	LARGE-LOSS	FOCAL	3	"PRICKLE4,TOMM6,USP49"
TCGA.AA.A010.01A	6	41773368	41908058	17	-1.3361	LARGE-LOSS	FOCAL	4	"BYSL,CCND3,MED20,USP49"
TCGA.AG.A025.01A	6	42933736	42937389	5	-4.7328	LARGE-LOSS	FOCAL	1	PEX6
TCGA.AA.A010.01A	6	43033308	43044175	13	-1.5696	LARGE-LOSS	FOCAL	2	"KLC4,PTK7"
TCGA.AA.A010.01A	6	43304916	43332978	10	-1.843	LARGE-LOSS	FOCAL	1	ZNF318
TCGA.AG.A025.01A	6	43307879	43310386	4	-2.0844	LARGE-LOSS	FOCAL	1	ZNF318
TCGA.AA.A00O.01A	6	43495324	43496940	4	-1.4512	LARGE-LOSS	FOCAL	1	XPO5
TCGA.AA.A010.01A	6	43529935	43572923	17	-1.7202	LARGE-LOSS	FOCAL	2	"POLH,XPO5"
TCGA.AG.3909.01A	6	44198036	44226892	19	-1.8299	LARGE-LOSS	FOCAL	4	"HSP90AB1,NFKBIE,SLC29A1,SLC35B2"
TCGA.AG.A00H.01A	6	44199688	44219457	11	-1.9943	LARGE-LOSS	FOCAL	2	"HSP90AB1,SLC29A1"
TCGA.AG.4009.01A	6	44201107	44228133	16	-1.6449	LARGE-LOSS	FOCAL	4	"HSP90AB1,NFKBIE,SLC29A1,SLC35B2"
TCGA.AA.A01Q.01A	6	44216319	44219457	7	-1.5154	LARGE-LOSS	FOCAL	1	HSP90AB1
TCGA.AA.A00N.01A	6	44216319	44221196	9	-2.4064	LARGE-LOSS	FOCAL	1	HSP90AB1
TCGA.AA.A010.01A	6	44216319	44255259	25	-2.0931	LARGE-LOSS	FOCAL	5	"HSP90AB1,NFKBIE,SLC35B2,TCTE1,TMEM151B"
TCGA.AF.3914.01A	6	44220771	44226892	6	-1.7181	LARGE-LOSS	FOCAL	3	"HSP90AB1,NFKBIE,SLC35B2"
TCGA.A6.6780	6	44924393	44924707	3	-3.9556	LARGE-LOSS	FOCAL	1	SUPT3H
TCGA.AA.A010.01A	6	45390267	45405632	3	-2.4889	LARGE-LOSS	FOCAL	1	RUNX2
TCGA.AA.3982	6	46105418	46112388	8	-1.4499	LARGE-LOSS	FOCAL	1	ENPP4
TCGA.AA.3530	6	46151706	46152049	3	-2.7471	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	6	46151706	46152049	3	-5.0051	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	6	46151706	46152049	3	-8.3701	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	6	46151706	46152049	3	-4.3571	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4616	6	46631107	46632005	3	-4.4	LARGE-LOSS	FOCAL	1	SLC25A27
TCGA.AA.A010.01A	6	46637847	46679181	15	-2.0561	LARGE-LOSS	FOCAL	3	"PLA2G7,SLC25A27,TDRD6"
TCGA.A6.2685	6	48683032	48683535	3	-3.2111	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6535	6	48933069	48947189	3	-2.0449	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	49437858	49459810	7	-1.6146	LARGE-LOSS	FOCAL	1	CENPQ
TCGA.AA.3941	6	49924406	49935356	5	-8.4091	LARGE-LOSS	FOCAL	1	DEFB114
TCGA.AA.3949	6	50262723	50264130	3	-1.7483	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	6	50786544	50825001	8	-1.4052	LARGE-LOSS	FOCAL	1	TFAP2B
TCGA.AA.A00N.01A	6	52142296	52271628	10	-1.3585	LARGE-LOSS	FOCAL	2	"MCM3,PAQR8"
TCGA.AG.A015.01A	6	52270075	52271628	2	-1.3455	LARGE-LOSS	FOCAL	1	PAQR8
TCGA.AA.3941	6	52279900	52305881	7	-1.3592	LARGE-LOSS	FOCAL	1	EFHC1
TCGA.CM.6680	6	52626268	52626816	3	-2.8691	LARGE-LOSS	FOCAL	1	GSTA2
TCGA.AA.A00N.01A	6	52696597	52702283	5	-1.5683	LARGE-LOSS	FOCAL	1	GSTA5
TCGA.AA.A004.01A	6	52761556	52764695	3	-3.5763	LARGE-LOSS	FOCAL	1	GSTA3
TCGA.AA.A00N.01A	6	52935771	52945719	5	-1.4418	LARGE-LOSS	FOCAL	1	FBXO9
TCGA.AG.3883	6	53094860	53095562	3	-1.3586	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	53156537	53160372	3	-1.5072	LARGE-LOSS	FOCAL	1	ELOVL5
TCGA.AA.A02E.01A	6	53370557	53373913	5	-1.5245	LARGE-LOSS	FOCAL	1	GCLC
TCGA.AG.3575	6	53507626	53508326	3	-4.2355	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	53518872	53519668	2	-1.9789	LARGE-LOSS	FOCAL	1	KLHL31
TCGA.G4.6314	6	56290872	56290947	3	-2.0578	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	6	56566623	56569026	2	-1.8782	LARGE-LOSS	FOCAL	1	DST
TCGA.AA.3811	6	57215493	57227694	3	-6.5939	LARGE-LOSS	FOCAL	1	PRIM2
TCGA.A6.2672	6	57323778	57338317	6	-6.8111	LARGE-LOSS	FOCAL	1	PRIM2
TCGA.AA.3811	6	58432656	58435427	3	-6.9966	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6883	6	58432656	58435427	3	-6.9824	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	62995712	64356419	12	-1.3386	LARGE-LOSS	FOCAL	4	"KHDRBS2,LGSN,PHF3,PTP4A1"
TCGA.AG.A023.01A	6	64430490	65767470	4	-2.0931	LARGE-LOSS	FOCAL	1	EYS
TCGA.AA.3811	6	65919643	65920040	3	-7.6148	LARGE-LOSS	FOCAL	1	EYS
TCGA.AA.3811	6	65997064	66001748	3	-6.8493	LARGE-LOSS	FOCAL	1	EYS
TCGA.D5.7000	6	67009053	67048628	10	-2.2019	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	6	67132770	67152225	8	-5.72925	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	6	68696229	68698669	3	-9.88765	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	72002953	72011087	3	-1.936	LARGE-LOSS	FOCAL	1	OGFRL1
TCGA.AA.A010.01A	6	72002953	72011087	3	-3.0474	LARGE-LOSS	FOCAL	1	OGFRL1
TCGA.AG.A026	6	72218628	72221972	3	-5.7009	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2672	6	73592596	73598859	7	-7.8629	LARGE-LOSS	FOCAL	1	KCNQ5
TCGA.AA.A00N.01A	6	73985191	74063537	5	-1.476	LARGE-LOSS	FOCAL	2	"DPPA5,KHDC1"
TCGA.AA.A00N.01A	6	74227608	74407076	17	-1.3643	LARGE-LOSS	FOCAL	3	"CD109,EEF1A1,SLC17A5"
TCGA.AZ.6600	6	74675290	74675685	3	-1.4697	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01Y	6	75447087	75449702	4	-4.0312	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6512	6	76156850	76160100	3	-5.2033	LARGE-LOSS	FOCAL	1	FILIP1
TCGA.A6.3808.01A	6	76589488	76600883	6	-2.5424	LARGE-LOSS	FOCAL	1	MYO6
TCGA.AA.A017.01A	6	76595665	76596522	2	-3.3674	LARGE-LOSS	FOCAL	1	MYO6
TCGA.AG.A026	6	77315830	77327284	6	-7.9802	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	6	78911698	78912261	3	-8.2123	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A0XD	6	78979397	79026685	7	-5.1063	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1HA	6	78979397	79026685	7	-8.416	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6512	6	78979397	79026685	7	-3.0702	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6310	6	78979397	79026685	6	-3.707	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6538	6	78987485	79024632	5	-1.4835	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3866	6	78987485	79026685	6	-5.3039	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	6	78987485	79026685	6	-1.9798	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A28H	6	78987485	79026685	6	-2.2528	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3911	6	81367312	81409274	20	-3.7609	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	6	82420527	82425524	3	-8.35935	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	82941388	83080047	8	-1.5917	LARGE-LOSS	FOCAL	2	"IBTK,TPBG"
TCGA.AA.A00N.01A	6	83892517	83926167	8	-1.4773	LARGE-LOSS	FOCAL	3	"ME1,PGM3,RWDD2A"
TCGA.AG.3909.01A	6	86346658	86351023	3	-1.9137	LARGE-LOSS	FOCAL	1	SYNCRIP
TCGA.DC.6155	6	87078174	87084762	3	-1.8917	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	6	88153692	88171356	3	-1.32245	LARGE-LOSS	FOCAL	1	C6orf165
TCGA.AA.3844	6	88559272	88560722	3	-1.4686	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	88763591	88773769	5	-1.4208	LARGE-LOSS	FOCAL	1	SPACA1
TCGA.AA.3941	6	89049100	89164037	39	-1.4298	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	6	89335680	89339502	3	-3.81285	LARGE-LOSS	FOCAL	1	RNGTT
TCGA.DC.5869	6	90634026	90636938	3	-3.8452	LARGE-LOSS	FOCAL	1	BACH2
TCGA.G4.6302	6	91126479	91126672	3	-1.7102	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	6	91414885	99192972	2216	-1.3717	LARGE-LOSS	FOCAL	9	"EPHA7,FHL5,FUT9,GPR63,KLHL32,MANEA,MMS22L,NDUFAF4,UFL1"
TCGA.AA.A00N.01A	6	94120184	96034309	4	-2.0826	LARGE-LOSS	FOCAL	2	"EPHA7,MANEA"
TCGA.AG.A023.01A	6	96652985	96661985	6	-1.9741	LARGE-LOSS	FOCAL	1	FUT9
TCGA.AA.3982	6	96658434	96662600	6	-1.9253	LARGE-LOSS	FOCAL	1	FUT9
TCGA.AA.3850	6	97113459	97122522	10	-2.13795	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	6	97875495	97877555	2	-1.7252	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	6	99282739	99323249	4	-2.0663	LARGE-LOSS	FOCAL	2	"FBXL4,POU3F2"
TCGA.AA.A010.01A	6	99781186	99831537	9	-1.991	LARGE-LOSS	FOCAL	2	"COQ3,FAXC"
TCGA.AA.A01I.01A	6	100056563	100057031	2	-5.2528	LARGE-LOSS	FOCAL	1	PRDM13
TCGA.AA.3850	6	100742894	100798471	21	-1.35045	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	6	101406107	105135078	1030	-1.4449	LARGE-LOSS	FOCAL	1	GRIK2
TCGA.D5.6932	6	102230044	102881276	184	-1.3828	LARGE-LOSS	FOCAL	1	GRIK2
TCGA.AA.A010.01A	6	105563510	105614372	13	-2.4234	LARGE-LOSS	FOCAL	2	"BVES,POPDC3"
TCGA.AA.A01K.01A	6	107419737	107475776	3	-3.2596	LARGE-LOSS	FOCAL	2	"BEND3,PDSS2"
TCGA.AA.A010.01A	6	107811772	107955661	7	-1.6864	LARGE-LOSS	FOCAL	1	SOBP
TCGA.AA.3949	6	108293756	108294254	3	-1.8164	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02W.01A	6	109765367	109765864	2	-6.4194	LARGE-LOSS	FOCAL	1	MICAL1
TCGA.AA.A01K.01A	6	109765367	109766928	4	-5.1947	LARGE-LOSS	FOCAL	1	MICAL1
TCGA.DC.6158	6	110396190	110409476	8	-1.4458	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A004.01A	6	111583468	111585004	2	-5.3377	LARGE-LOSS	FOCAL	1	KIAA1919
TCGA.G4.6626	6	112363604	112369642	3	-1.6805	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6932	6	112955453	112957316	3	-3.8306	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3526	6	115202531	115202789	3	-5.5309	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	6	115202531	115202789	3	-3.606	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1HA	6	115368796	116489549	276	-6.8134	LARGE-LOSS	FOCAL	3	"COL10A1,FRK,NT5DC1"
TCGA.AA.A00N.01A	6	117858267	117891969	13	-1.3471	LARGE-LOSS	FOCAL	2	"DCBLD1,GOPC"
TCGA.AA.A010.01A	6	119221901	119287960	14	-1.7263	LARGE-LOSS	FOCAL	3	"ASF1A,FAM184A,MCM9"
TCGA.EI.6508	6	120081514	120851852	201	-2.9754	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6782	6	121775329	121780761	3	-1.5139	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.6608	6	121779645	121783129	3	-4.1786	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A288	6	121779645	121783129	3	-3.6364	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	6	122580444	122615693	11	-2.3942	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3862.01A	6	123539709	123851583	38	-1.507	LARGE-LOSS	FOCAL	1	TRDN
TCGA.AG.3909.01A	6	126072887	126075595	2	-2.2722	LARGE-LOSS	FOCAL	1	HEY2
TCGA.AG.4009.01A	6	126072887	126080225	3	-1.4843	LARGE-LOSS	FOCAL	1	HEY2
TCGA.AA.3850	6	130193551	130194875	6	-2.05555	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	6	130721729	130723842	3	-2.45335	LARGE-LOSS	FOCAL	1	TMEM200A
TCGA.AZ.6608	6	131312728	131447863	41	-1.5324	LARGE-LOSS	FOCAL	1	EPB41L2
TCGA.AA.3841	6	131323854	131324767	3	-5.4029	LARGE-LOSS	FOCAL	1	EPB41L2
TCGA.A6.3808.01A	6	132014610	132032019	7	-2.7969	LARGE-LOSS	FOCAL	3	"CTAGE9,ENPP3,OR2A4"
TCGA.AF.3914.01A	6	132270396	132271041	2	-2.7283	LARGE-LOSS	FOCAL	1	CTGF
TCGA.AM.5820	6	132658555	132872039	73	-2.9237	LARGE-LOSS	FOCAL	3	"MOXD1,STX7,TAAR9"
TCGA.AA.3811	6	132712306	132712924	3	-4.4206	LARGE-LOSS	FOCAL	1	MOXD1
TCGA.AA.A02E.01A	6	133097419	133100355	2	-3.1696	LARGE-LOSS	FOCAL	1	SLC18B1
TCGA.AA.3982	6	133281541	133284280	5	-2.3011	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	6	134050714	134053106	3	-7.1641	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	6	134059622	134198174	48	-1.3964	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	134491366	134498752	11	-1.5655	LARGE-LOSS	FOCAL	1	SGK1
TCGA.AA.A00N.01A	6	135507024	135515442	7	-1.5196	LARGE-LOSS	FOCAL	1	MYB
TCGA.AA.A010.01A	6	135507024	135524303	13	-2.4061	LARGE-LOSS	FOCAL	1	MYB
TCGA.AA.3941	6	136063745	136064192	3	-7.1336	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	6	136465432	136467133	3	-5.03395	LARGE-LOSS	FOCAL	1	PDE7B
TCGA.AA.3850	6	136482726	136498496	6	-1.62555	LARGE-LOSS	FOCAL	1	PDE7B
TCGA.AA.A01I.01A	6	136680888	136687415	6	-1.6228	LARGE-LOSS	FOCAL	1	MAP7
TCGA.AA.A010.01A	6	136878837	136888720	5	-2.0896	LARGE-LOSS	FOCAL	1	MAP3K5
TCGA.AA.A010.01A	6	138192338	138200391	7	-1.3267	LARGE-LOSS	FOCAL	1	TNFAIP3
TCGA.AA.A01C.01A	6	138607810	138610904	2	-2.2506	LARGE-LOSS	FOCAL	1	ARFGEF3
TCGA.AG.3909.01A	6	138726242	138733970	3	-1.5981	LARGE-LOSS	FOCAL	1	HEBP2
TCGA.AA.3941	6	141318350	141329671	9	-5.8235	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A029.01A	6	142723072	142729277	5	-2.915	LARGE-LOSS	FOCAL	1	ADGRG6
TCGA.AA.A010.01A	6	143381685	143382011	2	-2.4578	LARGE-LOSS	FOCAL	1	AIG1
TCGA.AA.A00N.01A	6	143806240	143828326	8	-1.3411	LARGE-LOSS	FOCAL	2	"FUCA2,PEX3"
TCGA.AG.A01N.01A	6	144507718	144508524	2	-3.0216	LARGE-LOSS	FOCAL	1	STX11
TCGA.AA.A00N.01A	6	144508524	144837338	41	-1.3299	LARGE-LOSS	FOCAL	2	"STX11,UTRN"
TCGA.AG.3909.01A	6	144783739	144820341	12	-1.7918	LARGE-LOSS	FOCAL	1	UTRN
TCGA.AA.3811	6	145148926	145156550	3	-4.8136	LARGE-LOSS	FOCAL	1	UTRN
TCGA.AA.A00N.01A	6	146121245	146126179	3	-1.809	LARGE-LOSS	FOCAL	1	FBXO30
TCGA.AA.3848	6	147178553	147180050	3	-1.5749	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01K.01A	6	151139269	151140764	2	-5.9195	LARGE-LOSS	FOCAL	1	PLEKHG1
TCGA.AA.A017.01A	6	152621729	152622956	2	-4.6549	LARGE-LOSS	FOCAL	1	SYNE1
TCGA.AG.3909.01A	6	153292256	153319626	10	-1.7599	LARGE-LOSS	FOCAL	2	"FBXO5,MTRF1L"
TCGA.AA.A00N.01A	6	153292256	153332677	13	-1.7249	LARGE-LOSS	FOCAL	3	"FBXO5,MTRF1L,RGS17"
TCGA.AA.3530	6	154267553	154269541	4	-2.0074	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	6	154268093	154269541	3	-2.8377	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	6	154468859	154480774	7	-1.407	LARGE-LOSS	FOCAL	2	"IPCEF1,OPRM1"
TCGA.AA.A00N.01A	6	155565101	155581356	13	-1.4159	LARGE-LOSS	FOCAL	2	"TFB1M,TIAM2"
TCGA.AG.4008	6	156139188	156139644	3	-1.4719	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3901	6	156139554	156140442	3	-1.328	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3594	6	157482863	157490115	3	-4.9892	LARGE-LOSS	FOCAL	1	ARID1B
TCGA.AA.A010.01A	6	158532368	158551357	9	-2.0481	LARGE-LOSS	FOCAL	1	SERAC1
TCGA.AG.3909.01A	6	159044519	159084254	10	-1.5622	LARGE-LOSS	FOCAL	3	"DYNLT1,SYTL3,TMEM181"
TCGA.AA.A010.01A	6	160103478	160201959	25	-2.1076	LARGE-LOSS	FOCAL	4	"ACAT2,SOD2,TCP1,WTAP"
TCGA.AA.A00N.01A	6	160157214	160238082	45	-1.7459	LARGE-LOSS	FOCAL	5	"ACAT2,MRPL18,PNLDC1,TCP1,WTAP"
TCGA.AG.3909.01A	6	160218282	160238082	15	-2.1176	LARGE-LOSS	FOCAL	2	"MRPL18,PNLDC1"
TCGA.AG.A015.01A	6	160237521	160238082	2	-1.6664	LARGE-LOSS	FOCAL	1	PNLDC1
TCGA.DC.6682	6	162376100	162424578	17	-1.4583	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3688	6	162447611	162507689	29	-3.5014	LARGE-LOSS	FOCAL	1	PARK2
TCGA.D5.7000	6	162451919	162537102	42	-1.5742	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AY.A69D	6	162461328	162511253	25	-1.3528	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AY.A69D	6	162513435	162545871	14	-2.3811	LARGE-LOSS	FOCAL	1	PARK2
TCGA.A6.6650	6	162513435	162594940	31	-3.3492	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3979	6	162513966	162635044	53	-1.3282	LARGE-LOSS	FOCAL	1	PARK2
TCGA.D5.6932	6	162573420	162633117	31	-1.51	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3968	6	162594940	162981380	170	-1.6709	LARGE-LOSS	FOCAL	1	PARK2
TCGA.G4.6294	6	162633117	162779000	56	-3.122	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AH.6643	6	162643426	162646457	3	-2.1916	LARGE-LOSS	FOCAL	1	PARK2
TCGA.CM.6161	6	162672884	162912513	103	-1.8733	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AG.A026	6	162709947	162825101	54	-1.7056	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AG.3592	6	162729380	162731342	3	-6.5943	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3685	6	162729380	162856803	65	-2.3716	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3850	6	162738704	162740105	5	-2.68335	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3941	6	162738803	162739764	3	-7.1439	LARGE-LOSS	FOCAL	1	PARK2
TCGA.G4.6626	6	162750014	162820485	33	-2.1968	LARGE-LOSS	FOCAL	1	PARK2
TCGA.DC.6155	6	162777704	162802402	17	-1.8057	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3971	6	162778345	162820485	24	-1.5571	LARGE-LOSS	FOCAL	1	PARK2
TCGA.DY.A1DG	6	162789299	162864838	42	-4.0578	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AG.3592	6	162799116	162946794	71	-3.4608	LARGE-LOSS	FOCAL	1	PARK2
TCGA.DC.6155	6	162803456	162808883	6	-5.8707	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3693	6	162833214	162887289	30	-6.0682	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.A01T	6	162875333	162906920	17	-3.8723	LARGE-LOSS	FOCAL	1	PARK2
TCGA.DY.A1DG	6	162875333	162951696	38	-1.3859	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AA.3511	6	162887289	162922135	18	-1.4432	LARGE-LOSS	FOCAL	1	PARK2
TCGA.DM.A1DA	6	162933635	162964681	19	-6.763	LARGE-LOSS	FOCAL	1	PARK2
TCGA.AD.A5EK	6	163007393	163078774	30	-3.8552	LARGE-LOSS	FOCAL	1	PARK2
TCGA.CA.5254	6	163023053	163333584	86	-3.2618	LARGE-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.AH.6544	6	163070020	163088782	3	-4.5154	LARGE-LOSS	FOCAL	1	PARK2
TCGA.G4.6626	6	163120384	163277413	33	-1.8751	LARGE-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.AA.3692	6	163171969	163172808	3	-2.4348	LARGE-LOSS	FOCAL	1	PACRG
TCGA.AA.3968	6	163171969	163172808	3	-2.1024	LARGE-LOSS	FOCAL	1	PACRG
TCGA.DC.4745	6	163171969	163172808	3	-4.7098	LARGE-LOSS	FOCAL	1	PACRG
TCGA.AA.3850	6	164211972	164213373	3	-1.39945	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	6	164306189	164307838	3	-4.22905	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	6	164898333	164920392	3	-1.4752	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	6	164898333	164920392	3	-1.3475	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	6	164997575	164998555	3	-1.3988	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	165746463	165756833	4	-1.39	LARGE-LOSS	FOCAL	1	PDE10A
TCGA.AA.A010.01A	6	166733623	166743606	7	-1.6519	LARGE-LOSS	FOCAL	1	SFT2D1
TCGA.A6.3808.01A	6	166736263	166743606	6	-3.1281	LARGE-LOSS	FOCAL	1	SFT2D1
TCGA.AF.4110	6	167234989	167237847	3	-2.2718	LARGE-LOSS	FOCAL	1	RPS6KA2
TCGA.AG.4021	6	167234989	167238611	3	-2.1121	LARGE-LOSS	FOCAL	1	RPS6KA2
TCGA.AA.A00N.01A	6	167356441	167435880	14	-1.4163	LARGE-LOSS	FOCAL	2	"FGFR1OP,RNASET2"
TCGA.A6.2677	6	168075513	168385773	77	-1.4228	LARGE-LOSS	FOCAL	2	"HGC6.3,MLLT4"
TCGA.AZ.4616	6	168094605	168599967	170	-1.8019	LARGE-LOSS	FOCAL	4	"FRMD1,HGC6.3,KIF25,MLLT4"
TCGA.AA.A010.01A	6	168430220	168445476	8	-2.112	LARGE-LOSS	FOCAL	1	KIF25
TCGA.A6.2672	6	168526857	168538681	6	-8.1029	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5665	6	168526857	168538681	6	-7.6386	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3685	6	168748910	168783280	3	-2.7395	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	6	169065354	169620256	4	-4.6453	LARGE-LOSS	FOCAL	2	"SMOC2,THBS2"
TCGA.AA.A017.01A	6	169637218	169637691	2	-4.7068	LARGE-LOSS	FOCAL	1	THBS2
TCGA.AA.A00N.01A	6	170049231	170169639	40	-1.769	LARGE-LOSS	FOCAL	5	"C6orf120,ERMARD,PHF10,TCTE3,WDR27"
TCGA.AA.A010.01A	6	170103067	170144122	12	-2.746	LARGE-LOSS	FOCAL	3	"C6orf120,PHF10,TCTE3"
TCGA.AG.4009.01A	6	170591883	170597746	5	-1.3454	LARGE-LOSS	FOCAL	1	DLL1
TCGA.AA.A01D.01A	6	170880449	170892551	7	-2.6427	LARGE-LOSS	FOCAL	2	"PDCD2,TBP"
TCGA.AA.A010.01A	7	193151	556983	10	-2.1475	LARGE-LOSS	FOCAL	3	"FAM20C,PDGFA,WI2-2373I1.2"
TCGA.AA.A00N.01A	7	814592	917871	28	-1.6655	LARGE-LOSS	FOCAL	3	"DNAAF5,GET4,SUN1"
TCGA.AA.A010.01A	7	894512	931863	17	-1.7073	LARGE-LOSS	FOCAL	2	"GET4,SUN1"
TCGA.AA.A010.01A	7	994854	1012805	3	-2.288	LARGE-LOSS	FOCAL	2	"ADAP1,COX19"
TCGA.AA.A010.01A	7	1094825	1275430	12	-1.4777	LARGE-LOSS	FOCAL	5	"C7orf50,GPER1,GPR146,UNCX,ZFAND2A"
TCGA.AA.A010.01A	7	1542490	1608748	14	-1.358	LARGE-LOSS	FOCAL	4	"INTS1,MAFK,PSMG3,TMEM184A"
TCGA.AA.A02F.01A	7	1607283	1608748	2	-6.6943	LARGE-LOSS	FOCAL	1	PSMG3
TCGA.DY.A1DG	7	1936678	1954731	3	-1.3255	LARGE-LOSS	FOCAL	1	MAD1L1
TCGA.QG.A5Z2	7	2150342	2159213	3	-5.911	LARGE-LOSS	FOCAL	1	MAD1L1
TCGA.AA.A01C.01A	7	2278723	2279046	2	-4.8776	LARGE-LOSS	FOCAL	1	FTSJ2
TCGA.AA.A029.01A	7	2278723	2279046	2	-6.7594	LARGE-LOSS	FOCAL	1	FTSJ2
TCGA.AA.A010.01A	7	2349369	2593898	40	-1.6538	LARGE-LOSS	FOCAL	6	"BRAT1,CHST12,EIF3B,GRIFIN,LFNG,SNX8"
TCGA.AA.A010.01A	7	2606672	2611786	4	-2.409	LARGE-LOSS	FOCAL	1	IQCE
TCGA.AA.A010.01A	7	2612990	2623808	6	-3.258	LARGE-LOSS	FOCAL	1	IQCE
TCGA.AF.3914.01A	7	2617836	2623808	4	-1.585	LARGE-LOSS	FOCAL	1	IQCE
TCGA.AA.A010.01A	7	2625831	2634467	5	-2.6793	LARGE-LOSS	FOCAL	1	IQCE
TCGA.AA.A010.01A	7	2636565	2701241	22	-1.38	LARGE-LOSS	FOCAL	2	"IQCE,TTYH3"
TCGA.A6.2672	7	3025150	3033864	8	-7.3824	LARGE-LOSS	FOCAL	1	CARD11
TCGA.A6.5665	7	3031018	3033864	7	-7.6385	LARGE-LOSS	FOCAL	1	CARD11
TCGA.CM.6678	7	3613666	3614783	3	-3.4242	LARGE-LOSS	FOCAL	1	SDK1
TCGA.A6.5665	7	4210253	4217968	4	-9.1348	LARGE-LOSS	FOCAL	1	SDK1
TCGA.AA.A010.01A	7	4862016	4946976	7	-1.3401	LARGE-LOSS	FOCAL	3	"MMD2,PAPOLB,RADIL"
TCGA.AA.A010.01A	7	5327399	5336560	6	-1.5206	LARGE-LOSS	FOCAL	1	SLC29A4
TCGA.AA.A010.01A	7	5391412	5568972	30	-1.4261	LARGE-LOSS	FOCAL	3	"ACTB,FBXL18,TNRC18"
TCGA.AA.A02J.01A	7	5751345	5752298	2	-5.9153	LARGE-LOSS	FOCAL	1	RNF216
TCGA.A6.3808.01A	7	5939878	6043620	38	-2.9904	LARGE-LOSS	FOCAL	4	"CCZ1,PMS2,RSPH10B,RSPH10B2"
TCGA.AZ.4684.01A	7	5977338	5978326	2	-4.8376	LARGE-LOSS	FOCAL	2	"RSPH10B,RSPH10B2"
TCGA.AA.A010.01A	7	6150738	6205145	19	-2.1961	LARGE-LOSS	FOCAL	2	"CYTH3,USP42"
TCGA.AA.A010.01A	7	6426790	6449416	7	-1.7768	LARGE-LOSS	FOCAL	2	"DAGLB,RAC1"
TCGA.AA.A01K.01A	7	6441457	6441897	2	-5.111	LARGE-LOSS	FOCAL	1	RAC1
TCGA.AA.A010.01A	7	6452381	6475981	9	-2.4668	LARGE-LOSS	FOCAL	1	DAGLB
TCGA.D5.5541	7	6462202	6463050	3	-3.6364	LARGE-LOSS	FOCAL	1	DAGLB
TCGA.AA.A010.01A	7	6553994	6744697	29	-1.6933	LARGE-LOSS	FOCAL	6	"C7orf26,GRID2IP,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.A6.3808.01A	7	6798652	6864063	18	-3.2488	LARGE-LOSS	FOCAL	3	"CCZ1B,RSPH10B,RSPH10B2"
TCGA.AA.3941	7	7176306	7178544	6	-1.5433	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	7514179	7530145	4	-1.3819	LARGE-LOSS	FOCAL	1	COL28A1
TCGA.AA.3850	7	8395719	8404147	5	-1.65545	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	8573556	8612114	18	-1.4001	LARGE-LOSS	FOCAL	1	NXPH1
TCGA.AA.3941	7	9781497	9811713	11	-1.976	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	9868670	9877719	9	-1.8718	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	10127913	10131258	8	-1.5525	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	10973230	11030292	8	-1.742	LARGE-LOSS	FOCAL	2	"NDUFA4,PHF14"
TCGA.AA.A017.01A	7	10977644	10979567	3	-2.8173	LARGE-LOSS	FOCAL	1	NDUFA4
TCGA.A6.5662	7	11599455	11605389	4	-1.592	LARGE-LOSS	FOCAL	1	THSD7A
TCGA.AA.3941	7	11725187	11785891	46	-1.366	LARGE-LOSS	FOCAL	1	THSD7A
TCGA.AA.3850	7	11741735	11759828	16	-4.65335	LARGE-LOSS	FOCAL	1	THSD7A
TCGA.AG.3594	7	11920872	11921304	3	-4.1353	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	11936437	11945408	7	-5.464	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	7	11938059	11945408	3	-3.4617	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	7	11938606	11949946	3	-2.8866	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	12254444	12263815	4	-1.7396	LARGE-LOSS	FOCAL	1	TMEM106B
TCGA.CL.4957	7	13022108	13048001	4	-2.0036	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	7	13468934	13471008	5	-3.9354	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3866	7	13468934	13471008	5	-1.3753	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	7	13468934	13471008	5	-1.8309	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	7	13468934	13471008	5	-1.4394	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	7	14845833	14846908	4	-1.7765	LARGE-LOSS	FOCAL	1	DGKB
TCGA.AA.3814	7	15229981	15230730	3	-1.4725	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	15425054	15433710	4	-1.3251	LARGE-LOSS	FOCAL	1	AGMO
TCGA.AA.A010.01A	7	15425054	15458139	5	-2.4625	LARGE-LOSS	FOCAL	1	AGMO
TCGA.AG.A01N.01A	7	16815819	16818591	4	-2.2288	LARGE-LOSS	FOCAL	1	TSPAN13
TCGA.AA.3811	7	17581786	17585608	6	-1.3436	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	20802789	21469857	7	-1.6773	LARGE-LOSS	FOCAL	2	"SP4,SP8"
TCGA.AA.A00N.01A	7	23224672	23286431	9	-2.0416	LARGE-LOSS	FOCAL	2	"GPNMB,NUPL2"
TCGA.CK.6747	7	24274012	24276215	3	-1.349	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	7	24839759	24846358	3	-1.3622	LARGE-LOSS	FOCAL	1	OSBPL3
TCGA.AA.A00N.01A	7	25989495	26412065	24	-1.6418	LARGE-LOSS	FOCAL	4	"CBX3,HNRNPA2B1,NFE2L3,SNX10"
TCGA.AA.A010.01A	7	25989495	26412065	24	-2.4808	LARGE-LOSS	FOCAL	4	"CBX3,HNRNPA2B1,NFE2L3,SNX10"
TCGA.EI.6512	7	29843849	29844319	3	-4.0247	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	30168790	30363208	9	-2.1292	LARGE-LOSS	FOCAL	2	"MTURN,ZNRF2"
TCGA.AA.A010.01A	7	32772542	32919030	4	-2.1546	LARGE-LOSS	FOCAL	1	KBTBD2
TCGA.AA.A010.01A	7	33134799	33148786	6	-2.1292	LARGE-LOSS	FOCAL	1	RP9
TCGA.A6.3808.01A	7	34981340	35058100	17	-1.546	LARGE-LOSS	FOCAL	1	DPY19L1
TCGA.AA.A010.01A	7	35013075	35293055	16	-1.3592	LARGE-LOSS	FOCAL	2	"DPY19L1,TBX20"
TCGA.A6.2671	7	35098914	35118917	3	-3.6779	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2679	7	35098914	35169722	4	-1.3424	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	7	37659499	37666341	4	-1.5768	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	7	37659499	37666870	5	-1.6879	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3488	7	37790923	37795437	3	-1.7104	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	7	37931480	37933666	5	-1.5517	LARGE-LOSS	FOCAL	1	NME8
TCGA.AA.A00N.01A	7	37934030	37953751	6	-1.5827	LARGE-LOSS	FOCAL	2	"NME8,SFRP4"
TCGA.D5.6932	7	41525782	41679113	54	-1.5799	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	7	41627046	41630771	4	-1.6321	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	42262682	42966940	8	-1.3501	LARGE-LOSS	FOCAL	3	"C7orf25,GLI3,PSMA2"
TCGA.WS.AB45	7	42752724	42756338	3	-3.9944	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	44244132	44251766	6	-1.6463	LARGE-LOSS	FOCAL	1	YKT6
TCGA.AA.A010.01A	7	44323681	44364891	2	-1.9597	LARGE-LOSS	FOCAL	1	CAMK2B
TCGA.AA.A01K.01A	7	44611049	44611915	2	-4.9394	LARGE-LOSS	FOCAL	1	DDX56
TCGA.AA.A01C.01A	7	44713963	44714725	2	-2.9057	LARGE-LOSS	FOCAL	1	OGDH
TCGA.AA.A010.01A	7	44795772	44807066	15	-1.6159	LARGE-LOSS	FOCAL	1	ZMIZ2
TCGA.AA.A00N.01A	7	44838760	44882828	8	-1.4844	LARGE-LOSS	FOCAL	2	"H2AFV,PPIA"
TCGA.AA.A010.01A	7	44874032	44923987	5	-1.7594	LARGE-LOSS	FOCAL	2	"H2AFV,PURB"
TCGA.AA.A010.01A	7	45011667	45067253	8	-1.5483	LARGE-LOSS	FOCAL	2	"CCM2,MYO1G"
TCGA.AA.3982	7	46745812	46752528	5	-1.3498	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	47987919	48017962	7	-1.9188	LARGE-LOSS	FOCAL	2	"HUS1,PKD1L1"
TCGA.AA.3941	7	49226603	49231954	3	-4.8152	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	7	50027628	50033073	3	-1.7359	LARGE-LOSS	FOCAL	1	ZPBP
TCGA.AA.3982	7	50033073	50034350	3	-4.1891	LARGE-LOSS	FOCAL	1	ZPBP
TCGA.AA.3941	7	52596524	52605845	7	-1.5226	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	55459447	55479573	5	-1.8281	LARGE-LOSS	FOCAL	1	LANCL2
TCGA.AA.A010.01A	7	56020840	56052484	7	-2.0399	LARGE-LOSS	FOCAL	2	"GBAS,MRPS17"
TCGA.A6.3808.01A	7	56082669	56129403	16	-2.1926	LARGE-LOSS	FOCAL	2	"CCT6A,PSPH"
TCGA.AA.A00N.01A	7	56120070	56130652	13	-2.3344	LARGE-LOSS	FOCAL	1	CCT6A
TCGA.AA.3941	7	56678040	56681895	6	-2.1644	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	7	56679831	56683150	3	-2.58285	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	7	57566929	57574115	3	-3.7142	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	7	57571770	57574568	3	-4.75615	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	57571770	57574568	3	-6.3618	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	7	57571770	57574568	3	-5.9571	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	7	57914384	61858374	7	-1.72535	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	7	61846305	61888127	4	-3.536	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6169	7	61846305	61888127	3	-4.361	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	7	61846305	62453345	17	-1.9098	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	61846305	62453345	18	-3.0425	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	7	61888127	62111503	7	-5.95645	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	7	62393417	62453345	6	-1.3542	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	7	62404705	62453345	5	-4.2406	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	7	62439280	62453345	3	-5.99	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3726	7	64770186	64779333	3	-1.9567	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6537	7	70832177	70837797	6	-2.9172	LARGE-LOSS	FOCAL	1	WBSCR17
TCGA.CM.6169	7	70902614	70958303	16	-2.9767	LARGE-LOSS	FOCAL	1	WBSCR17
TCGA.AA.A00N.01A	7	72396893	72410334	7	-1.6037	LARGE-LOSS	FOCAL	1	POM121
TCGA.AA.A010.01A	7	72951573	72988676	13	-1.3762	LARGE-LOSS	FOCAL	2	"BCL7B,TBL2"
TCGA.AG.A015.01A	7	73449618	73450863	2	-2.4456	LARGE-LOSS	FOCAL	1	ELN
TCGA.AA.A010.01A	7	73482919	73520158	7	-1.5519	LARGE-LOSS	FOCAL	2	"ELN,LIMK1"
TCGA.A6.3808.01A	7	74146793	75155180	64	-2.1541	LARGE-LOSS	FOCAL	10	"GATSL2,GTF2I,GTF2IRD2,GTF2IRD2B,NCF1,POM121C,SPDYE5,TRIM73,TRIM74,WBSCR16"
TCGA.A6.3808.01A	7	75608727	75625739	16	-1.5733	LARGE-LOSS	FOCAL	3	"POR,STYXL1,TMEM120A"
TCGA.A6.3808.01A	7	76063326	76922262	38	-1.3678	LARGE-LOSS	FOCAL	6	"CCDC146,DTX2,FGL2,POMZP3,UPK3B,ZP3"
TCGA.AA.A01K.01A	7	76254789	76255250	2	-6.8376	LARGE-LOSS	FOCAL	1	POMZP3
TCGA.AA.3850	7	76349601	76506633	26	-2.84795	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	76446321	76509267	16	-2.0312	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3973	7	76506633	76509505	3	-4.16	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	7	78331464	78337769	6	-2.9952	LARGE-LOSS	FOCAL	1	MAGI2
TCGA.AA.3811	7	78331464	78350593	11	-2.2379	LARGE-LOSS	FOCAL	1	MAGI2
TCGA.AA.3982	7	81782551	81794235	10	-1.5323	LARGE-LOSS	FOCAL	1	CACNA2D1
TCGA.AA.3850	7	84200106	84206518	7	-7.83965	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	84200106	84206518	7	-4.9715	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	87507341	87517238	5	-1.7398	LARGE-LOSS	FOCAL	1	DBF4
TCGA.AA.A00N.01A	7	89789067	89856268	10	-1.5017	LARGE-LOSS	FOCAL	2	"STEAP1,STEAP2"
TCGA.DM.A0XD	7	90217217	90255505	11	-2.2368	LARGE-LOSS	FOCAL	1	CDK14
TCGA.AA.A010.01A	7	90225890	90233461	2	-2.7654	LARGE-LOSS	FOCAL	1	CDK14
TCGA.AA.A00N.01A	7	90894205	91509284	6	-1.8869	LARGE-LOSS	FOCAL	2	"FZD1,MTERF1"
TCGA.AA.A00N.01A	7	91746326	91788271	13	-1.5609	LARGE-LOSS	FOCAL	2	"CYP51A1,LRRD1"
TCGA.AA.A00N.01A	7	91863716	91871311	7	-1.4023	LARGE-LOSS	FOCAL	1	KRIT1
TCGA.AA.A00N.01A	7	92078015	92085649	4	-1.7259	LARGE-LOSS	FOCAL	1	GATAD1
TCGA.AA.3850	7	92253971	92255723	3	-7.23625	LARGE-LOSS	FOCAL	1	CDK6
TCGA.AA.3941	7	93122695	93126828	6	-4.4274	LARGE-LOSS	FOCAL	1	CALCR
TCGA.AA.3844	7	93126467	93126828	3	-2.3009	LARGE-LOSS	FOCAL	1	CALCR
TCGA.AA.3982	7	93126467	93126828	3	-7.6493	LARGE-LOSS	FOCAL	1	CALCR
TCGA.AA.3982	7	93236701	93254499	7	-1.7773	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	93239078	93254499	6	-2.5829	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	93353312	93379355	11	-1.3928	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	7	93654751	93657752	3	-3.5305	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A023.01A	7	94293980	94297260	3	-1.78	LARGE-LOSS	FOCAL	1	PEG10
TCGA.AA.A00N.01A	7	94293980	94539379	4	-1.4593	LARGE-LOSS	FOCAL	2	"PEG10,PPP1R9A"
TCGA.AA.3941	7	94586676	94593139	4	-1.3922	LARGE-LOSS	FOCAL	1	PPP1R9A
TCGA.AG.A01N.01A	7	94879286	94881025	2	-2.6356	LARGE-LOSS	FOCAL	1	PPP1R9A
TCGA.AA.A00N.01A	7	95214903	95434024	12	-1.4968	LARGE-LOSS	FOCAL	2	"DYNC1I1,PDK4"
TCGA.AA.A00N.01A	7	96635246	97498223	24	-1.3801	LARGE-LOSS	FOCAL	5	"ASNS,DLX5,DLX6,SDHAF3,TAC1"
TCGA.AA.3850	7	97144768	97157540	4	-2.02765	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02F.01A	7	97873836	97875207	3	-3.7492	LARGE-LOSS	FOCAL	1	TECPR1
TCGA.AA.A010.01A	7	97911626	97923308	5	-2.2219	LARGE-LOSS	FOCAL	2	"BAIAP2L1,BRI3"
TCGA.AA.A00N.01A	7	98478734	98503748	11	-1.4526	LARGE-LOSS	FOCAL	1	TRRAP
TCGA.AA.A02E.01A	7	98564613	98565086	2	-4.6544	LARGE-LOSS	FOCAL	1	TRRAP
TCGA.AA.A029.01A	7	98637953	98643270	3	-4.3762	LARGE-LOSS	FOCAL	1	SMURF1
TCGA.AA.A00N.01A	7	98997886	99015000	6	-1.7066	LARGE-LOSS	FOCAL	4	"ATP5J2-PTCD1,BUD31,PDAP1,PTCD1"
TCGA.NH.A50V	7	99690689	99693551	3	-6.7998	LARGE-LOSS	FOCAL	1	MCM7
TCGA.AA.A02F.01A	7	99700281	99700995	2	-6.1044	LARGE-LOSS	FOCAL	1	AP4M1
TCGA.AA.A02J.01A	7	99709341	99710369	2	-5.9504	LARGE-LOSS	FOCAL	1	TAF6
TCGA.AA.A010.01A	7	100146395	100161797	10	-1.8647	LARGE-LOSS	FOCAL	1	AGFG2
TCGA.AA.A010.01A	7	100162483	100179348	9	-2.3133	LARGE-LOSS	FOCAL	4	"AGFG2,LRCH4,SAP25,ZASP"
TCGA.AA.A010.01A	7	100179663	100193147	10	-1.5389	LARGE-LOSS	FOCAL	2	"FBXO24,LRCH4"
TCGA.AA.A010.01A	7	100273816	100304416	18	-2.0205	LARGE-LOSS	FOCAL	3	"GIGYF1,GNB2,POP7"
TCGA.AA.A029.01A	7	100355807	100357313	3	-4.8107	LARGE-LOSS	FOCAL	1	ZAN
TCGA.AA.A017.01A	7	100372920	100373274	2	-4.6282	LARGE-LOSS	FOCAL	1	ZAN
TCGA.AA.A010.01A	7	100402761	100424529	15	-1.4513	LARGE-LOSS	FOCAL	1	EPHB4
TCGA.AA.A02E.01A	7	100410392	100411514	3	-4.1232	LARGE-LOSS	FOCAL	1	EPHB4
TCGA.AA.A010.01A	7	100470199	100490739	21	-2.0231	LARGE-LOSS	FOCAL	4	"ACHE,SRRT,TRIP6,UFSP1"
TCGA.A6.3808.01A	7	100674844	100685890	10	-2.4352	LARGE-LOSS	FOCAL	1	MUC17
TCGA.AA.A02E.01A	7	100693713	100701203	6	-1.7165	LARGE-LOSS	FOCAL	1	MUC17
TCGA.AA.A010.01A	7	100799823	100803775	4	-1.7498	LARGE-LOSS	FOCAL	1	AP1S1
TCGA.AA.A00N.01A	7	100958413	101006262	6	-1.3688	LARGE-LOSS	FOCAL	2	"COL26A1,IFT22"
TCGA.A6.2672	7	101341245	101604525	50	-2.887	LARGE-LOSS	FOCAL	1	CUX1
TCGA.AA.A010.01A	7	101877334	101921183	7	-1.725	LARGE-LOSS	FOCAL	1	CUX1
TCGA.AA.A010.01A	7	101923273	101960760	11	-2.4049	LARGE-LOSS	FOCAL	2	"CUX1,SH2B2"
TCGA.AA.A02E.01A	7	102114800	102235687	6	-1.7321	LARGE-LOSS	FOCAL	6	"POLR2J,POLR2J3,RASA4,RASA4B,SPDYE2,SPDYE2B"
TCGA.AA.3509.01A	7	102309335	102311926	2	-2.7932	LARGE-LOSS	FOCAL	1	POLR2J2
TCGA.AA.A02E.01A	7	102948003	102950735	3	-1.4813	LARGE-LOSS	FOCAL	1	PMPCB
TCGA.AA.3941	7	103459934	103472986	13	-1.5383	LARGE-LOSS	FOCAL	1	RELN
TCGA.AA.3811	7	103466057	103472986	9	-2.3577	LARGE-LOSS	FOCAL	1	RELN
TCGA.AA.3864	7	103466057	103472986	9	-1.9805	LARGE-LOSS	FOCAL	1	RELN
TCGA.AA.3982	7	103466057	103472986	9	-2.7396	LARGE-LOSS	FOCAL	1	RELN
TCGA.AA.3811	7	106189869	106190329	3	-4.0861	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	7	106189869	106190329	3	-1.3762	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	106189869	106190329	3	-2.2853	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	7	106189869	106190329	3	-3.125	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	107207466	107224276	8	-2.1441	LARGE-LOSS	FOCAL	2	"BCAP29,DUS4L"
TCGA.AA.A02J.01A	7	107302045	107303694	2	-3.5556	LARGE-LOSS	FOCAL	1	SLC26A4
TCGA.F5.6812	7	108955756	108957114	3	-2.8781	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A69D	7	109308306	109320012	3	-2.0602	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A69D	7	109982680	110024018	18	-2.4133	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A69D	7	110157545	110172372	12	-1.8212	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A69D	7	110174040	110208471	12	-1.3445	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3524	7	110301345	110302373	3	-1.3824	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	110738344	110743093	3	-7.309	LARGE-LOSS	FOCAL	2	"IMMP2L,LRRN3"
TCGA.G4.6294	7	110892850	111022480	17	-4.2179	LARGE-LOSS	FOCAL	1	IMMP2L
TCGA.AA.A02J.01A	7	111379148	111398628	8	-2.5463	LARGE-LOSS	FOCAL	1	DOCK4
TCGA.AA.3532	7	115583456	115585771	3	-1.8026	LARGE-LOSS	FOCAL	1	TFEC
TCGA.AA.A010.01A	7	116593568	116608417	8	-2.7007	LARGE-LOSS	FOCAL	1	ST7
TCGA.AA.A00N.01A	7	116593568	116654964	9	-1.3585	LARGE-LOSS	FOCAL	1	ST7
TCGA.AA.3850	7	116768873	116780382	3	-2.41235	LARGE-LOSS	FOCAL	1	ST7
TCGA.AA.A00N.01A	7	117060190	117066853	3	-1.9132	LARGE-LOSS	FOCAL	1	ASZ1
TCGA.AA.3850	7	118452825	118468610	6	-6.88845	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	121769368	121965484	8	-1.3453	LARGE-LOSS	FOCAL	3	"AASS,CADPS2,FEZF1"
TCGA.AF.3914.01A	7	121942084	121942836	2	-2.6205	LARGE-LOSS	FOCAL	1	FEZF1
TCGA.CK.5914.01A	7	121942836	121943202	2	-1.4565	LARGE-LOSS	FOCAL	1	FEZF1
TCGA.AA.3673	7	125655325	125655969	3	-1.7955	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	126882741	127031485	6	-2.166	LARGE-LOSS	FOCAL	2	"GRM8,ZNF800"
TCGA.A6.2674	7	127101186	127105710	3	-4.2119	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A023.01A	7	127668695	127669073	2	-3.9363	LARGE-LOSS	FOCAL	2	"LRRC4,SND1"
TCGA.AA.A010.01A	7	127668695	127670091	3	-3.2272	LARGE-LOSS	FOCAL	2	"LRRC4,SND1"
TCGA.AA.A010.01A	7	127970825	128049303	24	-2.1348	LARGE-LOSS	FOCAL	3	"IMPDH1,PRRT4,RBM28"
TCGA.AA.A02H.01A	7	128036600	128040152	4	-1.6157	LARGE-LOSS	FOCAL	1	IMPDH1
TCGA.AA.A010.01A	7	128441202	128478011	19	-2.0983	LARGE-LOSS	FOCAL	2	"CCDC136,FLNC"
TCGA.AA.A010.01A	7	128478301	128489195	16	-1.5236	LARGE-LOSS	FOCAL	1	FLNC
TCGA.AA.A010.01A	7	128784774	128807567	8	-1.8903	LARGE-LOSS	FOCAL	1	TSPAN33
TCGA.AA.A02H.01A	7	128806572	128843178	4	-1.6289	LARGE-LOSS	FOCAL	2	"SMO,TSPAN33"
TCGA.AA.A010.01A	7	129098508	129125383	11	-2.4416	LARGE-LOSS	FOCAL	1	STRIP2
TCGA.AG.A01N.01A	7	129938527	129940617	3	-3.1818	LARGE-LOSS	FOCAL	1	CPA4
TCGA.AA.A010.01A	7	130135167	130148365	14	-2.123	LARGE-LOSS	FOCAL	2	"COPG2,MEST"
TCGA.AF.3914.01A	7	130351683	130357545	5	-1.3741	LARGE-LOSS	FOCAL	2	"COPG2,TSGA13"
TCGA.AA.3850	7	133347569	133351359	6	-2.06095	LARGE-LOSS	FOCAL	1	EXOC4
TCGA.AA.3941	7	133453309	133460295	3	-2.6559	LARGE-LOSS	FOCAL	1	EXOC4
TCGA.AA.3850	7	133453829	133460295	3	-7.32195	LARGE-LOSS	FOCAL	1	EXOC4
TCGA.AG.A025.01A	7	134133089	134135491	4	-6.9516	LARGE-LOSS	FOCAL	1	AKR1B1
TCGA.AA.3941	7	134730150	134733073	3	-2.4212	LARGE-LOSS	FOCAL	1	AGBL3
TCGA.AA.A02H.01A	7	135290837	135291947	3	-1.3493	LARGE-LOSS	FOCAL	1	NUP205
TCGA.AA.3950	7	135488620	135491261	3	-1.7276	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	7	136794883	136800485	8	-5.51275	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A025.01A	7	140221603	140223069	2	-6.032	LARGE-LOSS	FOCAL	1	DENND2A
TCGA.AA.A02H.01A	7	140257881	140259456	2	-2.7469	LARGE-LOSS	FOCAL	1	DENND2A
TCGA.AG.A023.01A	7	140257881	140259456	2	-3.085	LARGE-LOSS	FOCAL	1	DENND2A
TCGA.AA.A010.01A	7	141385241	141420698	8	-2.3733	LARGE-LOSS	FOCAL	2	"KIAA1147,WEE2"
TCGA.AA.A010.01A	7	141422885	141430011	6	-1.6283	LARGE-LOSS	FOCAL	1	WEE2
TCGA.AA.A010.01A	7	143047414	143057106	9	-2.5082	LARGE-LOSS	FOCAL	2	"CLCN1,FAM131B"
TCGA.AA.A010.01A	7	143079329	143095382	17	-1.4643	LARGE-LOSS	FOCAL	2	"EPHA1,ZYX"
TCGA.A6.3808.01A	7	143268964	143555877	9	-2.1905	LARGE-LOSS	FOCAL	4	"CTAGE15,CTAGE6,TCAF1,TCAF2"
TCGA.A6.3808.01A	7	143881150	144074151	15	-2.6659	LARGE-LOSS	FOCAL	7	"ARHGEF35,ARHGEF5,CTAGE4,CTAGE8,OR2A1,OR2A42,OR2A7"
TCGA.AA.3956	7	146007791	146018570	5	-1.4789	LARGE-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.3977	7	146892824	146908897	5	-2.0906	LARGE-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.3844	7	147151581	147155514	4	-1.7322	LARGE-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.3872	7	147151581	147155587	5	-1.4879	LARGE-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.A00N.01A	7	148463616	148487372	8	-1.3596	LARGE-LOSS	FOCAL	1	CUL1
TCGA.A6.3808.01A	7	148463616	148497543	13	-1.4379	LARGE-LOSS	FOCAL	1	CUL1
TCGA.AA.A00N.01A	7	148771428	148815276	7	-1.4186	LARGE-LOSS	FOCAL	2	"ZNF425,ZNF786"
TCGA.AA.A010.01A	7	148850995	148892640	6	-1.6189	LARGE-LOSS	FOCAL	2	"ZNF282,ZNF398"
TCGA.AA.A010.01A	7	148895406	148921272	7	-2.575	LARGE-LOSS	FOCAL	1	ZNF282
TCGA.AA.A010.01A	7	149128840	149191413	12	-2.638	LARGE-LOSS	FOCAL	2	"ZNF746,ZNF777"
TCGA.F4.6570	7	149610780	149633545	3	-1.4028	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3947	7	149633545	149662627	5	-5.7437	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3664	7	149642018	149662627	3	-4.0973	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3848	7	149642018	149662627	3	-1.5218	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3956	7	149642018	149662627	3	-4.3856	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	7	149642018	149662627	3	-1.3345	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3726	7	149642018	149662627	3	-1.8552	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	7	149657103	149672047	3	-1.4272	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	150069870	150093553	3	-2.3408	LARGE-LOSS	FOCAL	2	"REPIN1,ZNF775"
TCGA.AA.A010.01A	7	150645492	150748911	60	-1.4301	LARGE-LOSS	FOCAL	5	"ABCB8,ASIC3,ATG9B,KCNH2,NOS3"
TCGA.AA.A029.01A	7	150709400	150720753	8	-2.2077	LARGE-LOSS	FOCAL	2	"ATG9B,NOS3"
TCGA.AA.A010.01A	7	150749494	150825616	42	-2.1372	LARGE-LOSS	FOCAL	6	"AGAP3,ASIC3,CDK5,FASTK,SLC4A2,TMUB1"
TCGA.AF.3914.01A	7	150779230	150819743	8	-1.682	LARGE-LOSS	FOCAL	2	"AGAP3,TMUB1"
TCGA.AA.A010.01A	7	150915615	150934481	11	-1.6857	LARGE-LOSS	FOCAL	2	"ABCF2,CHPF2"
TCGA.AA.A01K.01A	7	150932115	150936129	3	-4.123	LARGE-LOSS	FOCAL	2	"CHPF2,SMARCD3"
TCGA.AA.A004.01A	7	150936129	150936702	3	-4.3424	LARGE-LOSS	FOCAL	1	SMARCD3
TCGA.AA.A010.01A	7	150936129	150972122	10	-2.5497	LARGE-LOSS	FOCAL	1	SMARCD3
TCGA.AA.A01K.01A	7	151265755	151269676	3	-3.4148	LARGE-LOSS	FOCAL	1	PRKAG2
TCGA.AA.A010.01A	7	151699780	151716723	4	-1.7466	LARGE-LOSS	FOCAL	1	GALNTL5
TCGA.A6.3808.01A	7	151919020	151935753	8	-2.9687	LARGE-LOSS	FOCAL	1	KMT2C
TCGA.AA.A010.01A	7	152055620	152142595	3	-1.7966	LARGE-LOSS	FOCAL	1	KMT2C
TCGA.A6.3807	7	152613362	152620371	3	-4.2058	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	7	152970478	152971686	3	-4.15295	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	7	152970478	152971686	3	-2.2679	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6923	7	154427997	154428417	3	-1.3503	LARGE-LOSS	FOCAL	1	DPP6
TCGA.A6.2674	7	154440712	154441510	3	-4.093	LARGE-LOSS	FOCAL	1	DPP6
TCGA.AA.A02H.01A	7	154759484	154760686	3	-3.4901	LARGE-LOSS	FOCAL	1	PAXIP1
TCGA.AA.A010.01A	7	154767405	154794503	7	-1.981	LARGE-LOSS	FOCAL	1	PAXIP1
TCGA.AD.A5EK	7	154963262	154965391	6	-1.3758	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	155089959	155255038	12	-1.6542	LARGE-LOSS	FOCAL	2	"EN2,INSIG1"
TCGA.AA.3811	7	155296179	155296614	3	-2.2481	LARGE-LOSS	FOCAL	1	CNPY1
TCGA.AA.3982	7	155296179	155296614	3	-1.5813	LARGE-LOSS	FOCAL	1	CNPY1
TCGA.AA.A010.01A	7	155567620	155604466	7	-1.6781	LARGE-LOSS	FOCAL	2	"RBM33,SHH"
TCGA.QG.A5Z2	7	156265285	156265574	3	-4.4872	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	156742763	156802307	14	-1.6165	LARGE-LOSS	FOCAL	2	"MNX1,NOM1"
TCGA.A6.5665	7	158917247	158972230	16	-5.2802	LARGE-LOSS	FOCAL	1	VIPR2
TCGA.A6.5661	7	158917247	158972564	17	-4.8793	LARGE-LOSS	FOCAL	1	VIPR2
TCGA.AF.2689	8	164983	200897	14	-2.5258	LARGE-LOSS	FOCAL	1	ZNF596
TCGA.AF.6672	8	164983	286044	74	-2.5282	LARGE-LOSS	FOCAL	1	ZNF596
TCGA.CM.5862	8	164983	335485	97	-4.3249	LARGE-LOSS	FOCAL	1	ZNF596
TCGA.AA.3560	8	164983	2178595	926	-1.3809	LARGE-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AZ.6608	8	164983	2178595	924	-1.9157	LARGE-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.RU.A8FL	8	164983	2178595	927	-1.4056	LARGE-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.BM.6198	8	164983	2205101	929	-1.51445	LARGE-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AG.3592	8	164983	3473854	1742	-1.4777	LARGE-LOSS	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AG.3909.01A	8	190805	195117	5	-1.8316	LARGE-LOSS	FOCAL	1	ZNF596
TCGA.AA.A00N.01A	8	190805	363050	6	-2.0151	LARGE-LOSS	FOCAL	2	"FBXO25,ZNF596"
TCGA.AG.3611.01A	8	192887	195117	4	-2.1179	LARGE-LOSS	FOCAL	1	ZNF596
TCGA.AG.3611.01A	8	363050	2092539	79	-1.3415	LARGE-LOSS	FOCAL	8	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP"
TCGA.QG.A5Z2	8	972080	980037	3	-1.3429	LARGE-LOSS	FOCAL	0	None
TCGA.QG.A5Z2	8	1293788	1309125	5	-1.5905	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.5403	8	1784858	1791684	3	-4.6549	LARGE-LOSS	FOCAL	1	ARHGEF10
TCGA.AA.A00N.01A	8	1950757	1954688	3	-2.1858	LARGE-LOSS	FOCAL	1	KBTBD11
TCGA.AA.3516	8	2012601	2013233	3	-1.3247	LARGE-LOSS	FOCAL	1	MYOM2
TCGA.AG.3909.01A	8	2054000	2090221	12	-1.7988	LARGE-LOSS	FOCAL	1	MYOM2
TCGA.AA.A00N.01A	8	2063713	2077067	6	-2.1052	LARGE-LOSS	FOCAL	1	MYOM2
TCGA.CM.6675	8	2131524	2142110	4	-8.534	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56K	8	2142110	2142373	3	-6.1854	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6926	8	2201384	2205949	3	-5.2578	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3952	8	2201384	2206485	4	-4.3644	LARGE-LOSS	FOCAL	0	None
TCGA.F5.6571	8	2201384	2206485	3	-2.8046	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3594	8	2201384	2207912	5	-4.9056	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.6606	8	2201384	2207912	5	-6.5394	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3560	8	2201384	2220775	6	-8.4234	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.6608	8	2201384	2220775	6	-9.3431	LARGE-LOSS	FOCAL	0	None
TCGA.RU.A8FL	8	2201384	2220775	6	-6.9952	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3494	8	2205101	2207912	4	-6.9297	LARGE-LOSS	FOCAL	0	None
TCGA.AF.6136	8	2205101	2207912	4	-7.5449	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3488	8	2205101	2220775	5	-8.5634	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3548	8	2205949	2207912	3	-7.663	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3549	8	2205949	2207912	3	-8.4795	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3678	8	2205949	2207912	3	-7.4564	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2692	8	2205949	2207912	3	-5.0391	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3728	8	2205949	2207912	3	-4.8	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4681	8	2205949	2207912	3	-7.7713	LARGE-LOSS	FOCAL	0	None
TCGA.BM.6198	8	2205949	2207912	3	-7.79085	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	8	2205949	2220775	3	-2.6688	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3664	8	2206485	2220775	3	-5.3531	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5868	8	2207912	2247093	3	-7.9887	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5912	8	2207912	2270327	3	-7.4253	LARGE-LOSS	FOCAL	0	None
TCGA.BM.6198	8	2220775	5041416	2357	-1.36945	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.F5.6465	8	2680218	2685345	3	-1.7876	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	2756166	2769464	12	-1.38705	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	2803843	2811240	11	-1.35055	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AG.3592	8	3474634	4046657	664	-3.602	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AZ.4681	8	3562642	3563250	3	-7.1702	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AA.3543	8	3585351	3589015	14	-4.5505	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.DM.A1DB	8	3666236	3666370	3	-4.2886	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AA.3684	8	3677890	3677986	3	-4.2739	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.G4.6304	8	3720197	3720562	3	-1.5417	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AG.3612	8	3732412	3734726	4	-7.6527	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AD.A5EK	8	3734637	3734726	3	-1.651	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AF.2692	8	3787059	3788748	3	-6.6184	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.DM.A1HA	8	3787059	3789920	5	-6.9351	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.EI.6512	8	3787082	3789920	3	-1.3642	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.D5.6532	8	3907806	3908316	3	-6.4965	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.D5.6931	8	3907840	3910095	3	-1.5751	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AZ.4681	8	3921923	3929794	16	-2.3487	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AA.3968	8	3986293	3988434	4	-1.9472	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.RU.A8FL	8	3997288	4003215	6	-7.6253	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AG.3592	8	4049010	4164974	150	-1.3536	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AG.3592	8	4165204	4777294	514	-3.3685	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AA.3858	8	4210139	4210745	3	-5.5179	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AA.3952	8	4283672	4283796	3	-4.5209	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AY.A8YK	8	4730253	4754776	12	-3.5658	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.5M.AAT4	8	4731576	4752556	11	-6.4105	LARGE-LOSS	FOCAL	1	CSMD1
TCGA.AG.3592	8	5065018	5304415	193	-3.4694	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	8	5124207	5128246	4	-1.7326	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	8	5555379	5556028	4	-1.7631	LARGE-LOSS	FOCAL	0	None
TCGA.D5.5539	8	5594131	5604494	3	-5.112	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A280	8	5601351	5604299	3	-1.7153	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A28G	8	5601351	5604299	3	-9.0785	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D9	8	5601684	5604326	3	-6.3134	LARGE-LOSS	FOCAL	0	None
TCGA.F5.6571	8	5601684	5604326	3	-6.9041	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6166	8	5647592	5732538	41	-2.901	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	6566171	6590030	4	-1.5558	LARGE-LOSS	FOCAL	1	AGPAT5
TCGA.AD.A5EK	8	6745215	6754918	7	-1.3439	LARGE-LOSS	FOCAL	0	None
TCGA.D5.5540	8	6825535	6827164	3	-6.9946	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	8	7346907	7698579	6	-3.0666	LARGE-LOSS	FOCAL	10	"DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,PRR23D1,PRR23D2"
TCGA.AG.3885	8	8092024	10371260	1259	-1.329	LARGE-LOSS	FOCAL	7	"CLDN23,ERI1,MFHAS1,MSRA,PPP1R3B,SGK223,TNKS"
TCGA.AA.A010.01A	8	8175629	8749739	12	-1.3657	LARGE-LOSS	FOCAL	3	"CLDN23,MFHAS1,SGK223"
TCGA.AY.6196	8	9385827	9386209	3	-1.6115	LARGE-LOSS	FOCAL	0	None
TCGA.AM.5820	8	10118003	10131240	10	-2.2615	LARGE-LOSS	FOCAL	1	MSRA
TCGA.5M.AAT6	8	10910862	10915208	3	-5.4074	LARGE-LOSS	FOCAL	1	XKR6
TCGA.AG.4009.01A	8	11142401	11188624	11	-1.5135	LARGE-LOSS	FOCAL	2	"MTMR9,SLC35G5"
TCGA.F4.6809	8	11170366	11171086	3	-4.6371	LARGE-LOSS	FOCAL	1	MTMR9
TCGA.CI.6621	8	12477491	12491638	3	-2.7217	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	12586388	12600635	7	-3.0719	LARGE-LOSS	FOCAL	1	LONRF1
TCGA.AA.A00N.01A	8	12589195	12600635	6	-1.8534	LARGE-LOSS	FOCAL	1	LONRF1
TCGA.EI.6883	8	12695010	12695429	3	-3.8797	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	8	12907253	12907970	3	-6.0061	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6885	8	13799409	13800097	3	-4.7212	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3968	8	15410249	15411607	3	-1.524	LARGE-LOSS	FOCAL	1	TUSC3
TCGA.EI.6883	8	15784406	15785116	3	-6.3174	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4614	8	15784881	15786888	3	-8.3393	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6931	8	15784881	15786888	3	-4.6921	LARGE-LOSS	FOCAL	0	None
TCGA.CL.5917	8	15949976	16003483	31	-2.8781	LARGE-LOSS	FOCAL	1	MSR1
TCGA.D5.6922	8	15951139	16000234	28	-3.2933	LARGE-LOSS	FOCAL	1	MSR1
TCGA.AA.3982	8	16426480	16437147	3	-7.6146	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	8	16437826	16482908	18	-1.4561	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	8	16535381	16537483	4	-1.4936	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	16813191	16815307	4	-1.6835	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A288	8	17024485	17036260	12	-3.4046	LARGE-LOSS	FOCAL	1	ZDHHC2
TCGA.AG.3909.01A	8	17089883	17102503	5	-1.5048	LARGE-LOSS	FOCAL	1	CNOT7
TCGA.A6.2672	8	17378897	17395023	16	-5.0449	LARGE-LOSS	FOCAL	1	SLC7A2
TCGA.AF.2693	8	18395620	18406481	5	-4.523	LARGE-LOSS	FOCAL	1	PSD3
TCGA.AA.3952	8	18852473	18858286	12	-3.1834	LARGE-LOSS	FOCAL	1	PSD3
TCGA.CM.6678	8	18852473	18858286	11	-2.9143	LARGE-LOSS	FOCAL	1	PSD3
TCGA.AA.A00N.01A	8	19675719	19689494	10	-1.4834	LARGE-LOSS	FOCAL	1	INTS10
TCGA.AG.3909.01A	8	19675719	19689494	10	-1.4037	LARGE-LOSS	FOCAL	1	INTS10
TCGA.AA.A010.01A	8	20061922	20077722	12	-1.4636	LARGE-LOSS	FOCAL	1	ATP6V1B2
TCGA.AA.A010.01A	8	21890591	21964762	32	-2.132	LARGE-LOSS	FOCAL	5	"DMTN,FAM160B2,FGF17,NPM2,NUDT18"
TCGA.AF.3914.01A	8	21924986	21927676	5	-2.1792	LARGE-LOSS	FOCAL	1	DMTN
TCGA.AA.A010.01A	8	21997424	22006183	5	-1.9251	LARGE-LOSS	FOCAL	2	"LGI3,REEP4"
TCGA.AA.A010.01A	8	22008975	22021349	10	-2.818	LARGE-LOSS	FOCAL	2	"LGI3,SFTPC"
TCGA.AA.A010.01A	8	22022902	22037844	8	-1.9279	LARGE-LOSS	FOCAL	1	BMP1
TCGA.AG.A02X.01A	8	22104654	22106517	4	-3.7829	LARGE-LOSS	FOCAL	1	POLR3D
TCGA.AG.3909.01A	8	22104654	22138579	8	-1.7934	LARGE-LOSS	FOCAL	2	"PIWIL2,POLR3D"
TCGA.AG.A01J.01A	8	22107540	22107887	2	-6.1918	LARGE-LOSS	FOCAL	1	POLR3D
TCGA.A6.3808.01A	8	22447059	22502196	29	-1.5435	LARGE-LOSS	FOCAL	4	"BIN3,C8orf58,CCAR2,PDLIM2"
TCGA.AA.A010.01A	8	22852028	22872160	10	-1.9584	LARGE-LOSS	FOCAL	1	RHOBTB2
TCGA.AA.3662	8	22955306	22962552	3	-6.9832	LARGE-LOSS	FOCAL	1	TNFRSF10C
TCGA.AG.3592	8	22962347	23167434	45	-2.8261	LARGE-LOSS	FOCAL	6	"CHMP7,LOXL2,R3HCC1,TNFRSF10A,TNFRSF10C,TNFRSF10D"
TCGA.AG.3909.01A	8	23106675	23117985	9	-1.6504	LARGE-LOSS	FOCAL	1	CHMP7
TCGA.AA.A02E.01A	8	23115471	23117985	6	-4.4059	LARGE-LOSS	FOCAL	1	CHMP7
TCGA.AA.A00N.01A	8	23291782	23307313	11	-1.6054	LARGE-LOSS	FOCAL	1	ENTPD4
TCGA.AG.3909.01A	8	23291782	23538717	15	-1.7156	LARGE-LOSS	FOCAL	3	"ENTPD4,NKX3-1,SLC25A37"
TCGA.AA.3532	8	23759254	23775468	3	-6.5777	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	8	24174529	24176624	3	-4.4821	LARGE-LOSS	FOCAL	1	ADAM28
TCGA.AA.3941	8	24176277	24177242	3	-5.905	LARGE-LOSS	FOCAL	1	ADAM28
TCGA.AA.3941	8	24450422	24458119	6	-1.5009	LARGE-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	8	24771290	24775532	4	-1.615	LARGE-LOSS	FOCAL	1	NEFM
TCGA.AG.3909.01A	8	24771290	24812989	8	-1.7331	LARGE-LOSS	FOCAL	2	"NEFL,NEFM"
TCGA.AA.A00N.01A	8	24773079	24811668	6	-1.7178	LARGE-LOSS	FOCAL	2	"NEFL,NEFM"
TCGA.AA.3941	8	27039099	27046400	3	-2.3481	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	27145019	27155948	5	-1.3299	LARGE-LOSS	FOCAL	1	TRIM35
TCGA.AA.A00O.01A	8	27293194	27293720	2	-5.6924	LARGE-LOSS	FOCAL	1	PTK2B
TCGA.AG.A01J.01A	8	27293194	27293720	2	-4.9313	LARGE-LOSS	FOCAL	1	PTK2B
TCGA.AG.3909.01A	8	27632958	27645365	5	-1.476	LARGE-LOSS	FOCAL	1	ESCO2
TCGA.AA.3844	8	27668514	27669563	5	-1.4663	LARGE-LOSS	FOCAL	1	PBK
TCGA.AG.3882	8	27752657	27755402	3	-1.395	LARGE-LOSS	FOCAL	1	SCARA5
TCGA.AA.A02W.01A	8	28210053	28210653	2	-7.604	LARGE-LOSS	FOCAL	1	ZNF395
TCGA.CI.6624	8	28218892	28222377	3	-2.0361	LARGE-LOSS	FOCAL	1	ZNF395
TCGA.AA.A010.01A	8	29921325	29963223	10	-1.4211	LARGE-LOSS	FOCAL	2	"LEPROTL1,SARAF"
TCGA.AA.3850	8	30724599	30731579	8	-2.03185	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	31741205	31743432	3	-2.6481	LARGE-LOSS	FOCAL	1	NRG1
TCGA.AA.3941	8	32106168	32122423	8	-1.3966	LARGE-LOSS	FOCAL	1	NRG1
TCGA.AA.3982	8	32854505	32893320	12	-2.7708	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	32859840	32893320	11	-2.4305	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	33342631	33369465	15	-1.505	LARGE-LOSS	FOCAL	2	"MAK16,TTI2"
TCGA.AG.3909.01A	8	33342631	33369465	15	-1.6762	LARGE-LOSS	FOCAL	2	"MAK16,TTI2"
TCGA.A6.2671	8	34025348	34926131	259	-1.4688	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6885	8	34729862	35782277	255	-1.8411	LARGE-LOSS	FOCAL	1	UNC5D
TCGA.AF.6672	8	35633285	35648940	3	-3.0925	LARGE-LOSS	FOCAL	1	UNC5D
TCGA.AG.3909.01A	8	37595400	37635459	16	-1.6877	LARGE-LOSS	FOCAL	2	"ERLIN2,PROSC"
TCGA.AG.3909.01A	8	38090501	38137039	26	-1.4246	LARGE-LOSS	FOCAL	3	"DDHD2,PPAPDC1B,WHSC1L1"
TCGA.AA.A01I.01A	8	38109382	38110515	3	-4.9818	LARGE-LOSS	FOCAL	1	DDHD2
TCGA.AG.A023.01A	8	38125857	38133763	4	-2.2498	LARGE-LOSS	FOCAL	2	"PPAPDC1B,WHSC1L1"
TCGA.AA.A01D.01A	8	38264410	38265672	3	-4.8935	LARGE-LOSS	FOCAL	1	LETM2
TCGA.AA.A00N.01A	8	38834066	38852820	10	-1.9879	LARGE-LOSS	FOCAL	2	"HTRA4,TM2D2"
TCGA.CK.5914.01A	8	38834066	38852820	10	-1.4261	LARGE-LOSS	FOCAL	2	"HTRA4,TM2D2"
TCGA.AZ.6608	8	38866217	40278196	398	-1.6766	LARGE-LOSS	FOCAL	7	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,IDO1,IDO2"
TCGA.AA.3941	8	39397014	39399230	4	-1.5002	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	39573524	39577302	3	-4.3475	LARGE-LOSS	FOCAL	1	ADAM18
TCGA.AA.3982	8	39576842	39577962	3	-4.5288	LARGE-LOSS	FOCAL	1	ADAM18
TCGA.AA.A01T	8	39830956	39831646	3	-2.0288	LARGE-LOSS	FOCAL	1	IDO2
TCGA.AG.3883	8	39872337	39872934	3	-4.8762	LARGE-LOSS	FOCAL	1	IDO2
TCGA.CM.5860	8	39884573	39904921	13	-1.3385	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01S	8	40184871	40186929	3	-5.01095	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01Z	8	40184871	40186929	3	-1.4146	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6506	8	40387790	40390130	3	-3.7319	LARGE-LOSS	FOCAL	1	ZMAT4
TCGA.AA.3941	8	40501101	40511935	3	-4.2801	LARGE-LOSS	FOCAL	1	ZMAT4
TCGA.AA.A02E.01A	8	41557873	41559530	3	-5.1434	LARGE-LOSS	FOCAL	1	ANK1
TCGA.AA.A00O.01A	8	41566287	41574424	4	-3.6789	LARGE-LOSS	FOCAL	1	ANK1
TCGA.AA.A02E.01A	8	41580611	41794755	8	-1.7326	LARGE-LOSS	FOCAL	2	"ANK1,KAT6A"
TCGA.A6.2685	8	41879527	41879960	3	-2.1243	LARGE-LOSS	FOCAL	1	KAT6A
TCGA.AA.A00N.01A	8	41905845	42026442	9	-1.7713	LARGE-LOSS	FOCAL	2	"AP3M2,KAT6A"
TCGA.CM.4752	8	41971847	41976333	3	-1.6656	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A025.01A	8	42179352	42183458	3	-4.7246	LARGE-LOSS	FOCAL	1	IKBKB
TCGA.AA.A00N.01A	8	42251677	42262848	8	-2.0382	LARGE-LOSS	FOCAL	1	VDAC3
TCGA.CK.5914.01A	8	42251677	42262848	8	-1.4717	LARGE-LOSS	FOCAL	1	VDAC3
TCGA.AA.A010.01A	8	42401569	42407620	3	-2.6661	LARGE-LOSS	FOCAL	1	SMIM19
TCGA.AA.A010.01A	8	42693134	42785189	14	-1.4528	LARGE-LOSS	FOCAL	3	"HOOK3,RNF170,THAP1"
TCGA.AA.A00N.01A	8	42761267	42798405	4	-2.2891	LARGE-LOSS	FOCAL	1	HOOK3
TCGA.A6.3808.01A	8	42865416	42873489	4	-3.9154	LARGE-LOSS	FOCAL	1	HOOK3
TCGA.AA.A00N.01A	8	42914181	43159836	31	-1.4931	LARGE-LOSS	FOCAL	4	"FNTA,HGSNAT,POMK,POTEA"
TCGA.AA.A010.01A	8	43002083	43016518	4	-2.4141	LARGE-LOSS	FOCAL	1	HGSNAT
TCGA.AA.3941	8	43455242	43762680	14	-2.5625	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	43499144	43778913	14	-2.88615	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	8	47354617	47385091	3	-6.5314	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	8	47384962	47397088	3	-6.3828	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3955	8	47384962	47397088	3	-5.1218	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3580	8	47700478	47742803	14	-1.9673	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	48852069	48877092	11	-1.6507	LARGE-LOSS	FOCAL	2	"MCM4,PRKDC"
TCGA.AA.A00N.01A	8	49637233	49833684	9	-1.8326	LARGE-LOSS	FOCAL	2	"EFCAB1,SNAI2"
TCGA.AA.A010.01A	8	52320590	52339169	7	-1.6222	LARGE-LOSS	FOCAL	1	PXDNL
TCGA.AA.3850	8	54118997	54121711	5	-1.85805	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	55798735	55817728	6	-1.90305	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3841	8	56113018	56114517	3	-1.513	LARGE-LOSS	FOCAL	1	XKR4
TCGA.AA.A00N.01A	8	56982243	57228527	19	-1.4086	LARGE-LOSS	FOCAL	5	"CHCHD7,MOS,PLAG1,RPS20,SDR16C5"
TCGA.CL.5918	8	56986177	56993881	3	-3.9634	LARGE-LOSS	FOCAL	1	RPS20
TCGA.AA.A010.01A	8	57125340	57129858	4	-2.4727	LARGE-LOSS	FOCAL	1	CHCHD7
TCGA.AA.3850	8	57610147	57610828	4	-2.02065	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	57876343	57905821	5	-1.5863	LARGE-LOSS	FOCAL	1	IMPAD1
TCGA.AA.3941	8	58197149	58218893	10	-1.3699	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	58208904	58217450	4	-5.47075	LARGE-LOSS	FOCAL	0	None
TCGA.F5.6813	8	58819751	58986366	54	-2.5482	LARGE-LOSS	FOCAL	1	FAM110B
TCGA.AG.3909.01A	8	59059138	59346942	5	-1.3745	LARGE-LOSS	FOCAL	2	"FAM110B,UBXN2B"
TCGA.AA.3872	8	59844253	59844927	4	-1.5623	LARGE-LOSS	FOCAL	1	TOX
TCGA.CM.6163	8	60831755	60838201	3	-2.1596	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6167	8	60999097	61003896	4	-3.6912	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6805	8	63051007	63060225	5	-3.787	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	65494073	65527583	6	-2.3319	LARGE-LOSS	FOCAL	2	"BHLHE22,CYP7B1"
TCGA.A6.2683	8	65765939	65768465	3	-1.4485	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	68070645	68102834	10	-1.3303	LARGE-LOSS	FOCAL	1	CSPP1
TCGA.AA.A010.01A	8	68200148	68255392	7	-1.5971	LARGE-LOSS	FOCAL	1	ARFGEF1
TCGA.AA.3941	8	68951904	68959331	7	-1.4527	LARGE-LOSS	FOCAL	1	PREX2
TCGA.AA.3850	8	69811356	69814577	3	-7.79875	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	8	70014260	70014975	3	-1.8933	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	8	70077794	70082787	4	-1.4923	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	70515772	70552962	10	-1.3707	LARGE-LOSS	FOCAL	1	SULF1
TCGA.A6.3808.01A	8	70536149	70541700	5	-3.2166	LARGE-LOSS	FOCAL	1	SULF1
TCGA.AA.3982	8	72957611	72959534	4	-1.5356	LARGE-LOSS	FOCAL	1	TRPA1
TCGA.CL.5918	8	73187867	73190233	3	-3.6747	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	73981991	74234877	15	-1.8034	LARGE-LOSS	FOCAL	4	"C8orf89,RDH10,RPL7,SBSPON"
TCGA.AA.A00N.01A	8	74203227	74205743	6	-2.1821	LARGE-LOSS	FOCAL	1	RPL7
TCGA.CK.5914.01A	8	74203227	74205743	6	-1.5259	LARGE-LOSS	FOCAL	1	RPL7
TCGA.AG.3909.01A	8	74203227	74209390	7	-1.4183	LARGE-LOSS	FOCAL	2	"RDH10,RPL7"
TCGA.AA.3850	8	74405925	74410152	5	-2.75795	LARGE-LOSS	FOCAL	1	STAU2
TCGA.AA.A010.01A	8	74868099	74922184	8	-1.9914	LARGE-LOSS	FOCAL	3	"LY96,TCEB1,TMEM70"
TCGA.AA.3850	8	76565552	76566967	3	-4.93085	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	76714761	76715412	3	-7.57545	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01K.01A	8	77754860	77763871	6	-2.3248	LARGE-LOSS	FOCAL	1	ZFHX4
TCGA.AA.3872	8	78422613	78449367	4	-1.7383	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	8	78935018	78935738	3	-3.4355	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	80399144	80404795	5	-4.6783	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	80677391	80679756	4	-2.7473	LARGE-LOSS	FOCAL	1	HEY1
TCGA.AA.A02E.01A	8	80679210	80679756	2	-3.7717	LARGE-LOSS	FOCAL	1	HEY1
TCGA.AA.A010.01A	8	81399034	81431431	6	-1.8268	LARGE-LOSS	FOCAL	1	ZBTB10
TCGA.AG.3909.01A	8	82195553	82196679	3	-1.4107	LARGE-LOSS	FOCAL	1	FABP5
TCGA.AA.3982	8	83888760	83892518	3	-3.9073	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	8	84273359	84278204	3	-4.2352	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	8	86041363	86057587	9	-2.1139	LARGE-LOSS	FOCAL	1	LRRCC1
TCGA.AA.A00N.01A	8	86162941	86193419	6	-1.978	LARGE-LOSS	FOCAL	1	CA13
TCGA.AG.3909.01A	8	86162941	86193419	6	-1.3478	LARGE-LOSS	FOCAL	1	CA13
TCGA.AA.A010.01A	8	87414216	87454811	9	-1.7811	LARGE-LOSS	FOCAL	1	WWP1
TCGA.AA.A010.01A	8	90921783	90936738	5	-2.2371	LARGE-LOSS	FOCAL	1	OSGIN2
TCGA.AA.A00N.01A	8	90982575	90994898	7	-1.6847	LARGE-LOSS	FOCAL	1	NBN
TCGA.A6.3808.01A	8	93074721	94721954	7	-2.0504	LARGE-LOSS	FOCAL	4	"C8orf87,FAM92A1,RUNX1T1,TRIQK"
TCGA.AA.A010.01A	8	94929992	94935365	4	-2.2796	LARGE-LOSS	FOCAL	1	PDP1
TCGA.AA.3850	8	95398842	95410985	4	-1.34995	LARGE-LOSS	FOCAL	1	RAD54B
TCGA.AG.A01L.01A	8	95653510	95655490	3	-1.9311	LARGE-LOSS	FOCAL	1	ESRP1
TCGA.CM.6161	8	95794585	95811983	3	-6.4785	LARGE-LOSS	FOCAL	1	DPY19L4
TCGA.AA.A00N.01A	8	95837108	95844188	5	-1.7264	LARGE-LOSS	FOCAL	1	INTS8
TCGA.AA.A010.01A	8	95884075	95894958	8	-1.537	LARGE-LOSS	FOCAL	2	"CCNE2,INTS8"
TCGA.AA.A00N.01A	8	95897266	95906089	6	-1.8963	LARGE-LOSS	FOCAL	1	CCNE2
TCGA.AA.A010.01A	8	95897266	95906089	6	-2.8343	LARGE-LOSS	FOCAL	1	CCNE2
TCGA.AA.A010.01A	8	95942659	95953017	4	-1.5596	LARGE-LOSS	FOCAL	1	TP53INP1
TCGA.AA.3681	8	96192854	96194058	3	-2.6866	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	96778873	96779658	3	-2.0437	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	96778873	96786147	9	-1.36095	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6157	8	97350392	97350954	3	-2.2668	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	97877405	97883332	3	-4.15315	LARGE-LOSS	FOCAL	1	CPQ
TCGA.D5.6532	8	98195882	98210007	3	-5.0763	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	98435683	98436375	3	-1.3913	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	8	98436362	98436904	3	-4.83715	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01K.01A	8	99057130	99057485	2	-5.6268	LARGE-LOSS	FOCAL	1	RPL30
TCGA.AA.A02F.01A	8	99057130	99057485	2	-6.0881	LARGE-LOSS	FOCAL	1	RPL30
TCGA.AA.A00N.01A	8	101105606	101177990	14	-1.797	LARGE-LOSS	FOCAL	4	"FBXO43,POLR2K,RGS22,SPAG1"
TCGA.AA.A010.01A	8	101195532	101243344	11	-1.3515	LARGE-LOSS	FOCAL	1	SPAG1
TCGA.AA.A010.01A	8	101716476	101733572	13	-1.9698	LARGE-LOSS	FOCAL	1	PABPC1
TCGA.AA.A010.01A	8	103662361	103855727	14	-2.1378	LARGE-LOSS	FOCAL	2	"AZIN1,KLF10"
TCGA.AA.A010.01A	8	104312304	104343522	6	-1.7576	LARGE-LOSS	FOCAL	1	FZD6
TCGA.AA.3850	8	105183911	105204184	6	-2.11615	LARGE-LOSS	FOCAL	1	RIMS2
TCGA.AA.3811	8	105532669	105533089	3	-3.5831	LARGE-LOSS	FOCAL	1	LRP12
TCGA.AA.3844	8	105532669	105533089	3	-3.3199	LARGE-LOSS	FOCAL	1	LRP12
TCGA.AA.3941	8	106725008	106790019	23	-1.5026	LARGE-LOSS	FOCAL	1	ZFPM2
TCGA.AA.3844	8	108357086	108360344	3	-5.244	LARGE-LOSS	FOCAL	1	ANGPT1
TCGA.AA.3844	8	108572245	108603141	3	-4.6014	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	8	111447077	111449123	3	-4.4486	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	112253841	112258836	3	-7.3293	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	8	112253841	112259168	4	-2.4309	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3955	8	113924173	113932787	3	-5.5144	LARGE-LOSS	FOCAL	1	CSMD3
TCGA.AA.3982	8	115738423	115745214	4	-2.1092	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.6605	8	118703809	118705184	3	-1.3722	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	119122303	119122759	2	-3.1164	LARGE-LOSS	FOCAL	1	EXT1
TCGA.AA.3982	8	119956042	119956318	3	-1.4074	LARGE-LOSS	FOCAL	1	TNFRSF11B
TCGA.AA.3850	8	120353983	120365612	11	-2.74505	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	8	120353983	120365612	11	-1.8315	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	120847084	120865238	8	-1.3763	LARGE-LOSS	FOCAL	1	DSCC1
TCGA.AA.A01D.01A	8	120854941	120859209	3	-4.023	LARGE-LOSS	FOCAL	1	DSCC1
TCGA.AA.3982	8	123042547	123046515	4	-1.786	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	8	124140502	124154485	6	-2.6116	LARGE-LOSS	FOCAL	1	TBC1D31
TCGA.AA.A00N.01A	8	124221615	124340468	12	-1.4311	LARGE-LOSS	FOCAL	5	"ATAD2,C8orf76,FAM83A,ZHX1,ZHX1-C8orf76"
TCGA.AA.A010.01A	8	125711705	125740063	3	-1.544	LARGE-LOSS	FOCAL	1	MTSS1
TCGA.AA.A02J.01A	8	126369434	126369903	2	-5.1457	LARGE-LOSS	FOCAL	1	NSMCE2
TCGA.AG.A01J.01A	8	126369434	126369903	2	-3.6649	LARGE-LOSS	FOCAL	1	NSMCE2
TCGA.AZ.5403	8	129530709	129532117	3	-1.6794	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5864	8	129630752	129631540	3	-2.2133	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	8	129752173	129756265	3	-1.7608	LARGE-LOSS	FOCAL	0	None
TCGA.CK.6751	8	131517829	131524121	3	-2.6206	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3955	8	132224891	132228024	4	-1.5358	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	8	133813473	133815870	4	-1.619	LARGE-LOSS	FOCAL	1	PHF20L1
TCGA.AA.A00O.01A	8	134254194	134258792	3	-3.7241	LARGE-LOSS	FOCAL	1	NDRG1
TCGA.AF.2692	8	134627634	134630401	3	-4.9115	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	8	137146809	137147931	3	-2.0217	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	8	138493349	138493982	3	-3.0721	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	8	139334719	139340173	3	-2.7553	LARGE-LOSS	FOCAL	1	FAM135B
TCGA.AA.3844	8	140550276	140551865	3	-2.0275	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A50T	8	140953958	140954619	3	-6.5275	LARGE-LOSS	FOCAL	1	TRAPPC9
TCGA.AA.A029.01A	8	142200377	142221513	3	-3.5925	LARGE-LOSS	FOCAL	2	"DENND3,SLC45A4"
TCGA.AA.3862.01A	8	142498597	143605541	35	-1.3435	LARGE-LOSS	FOCAL	3	"ADGRB1,MROH5,TSNARE1"
TCGA.QG.A5Z2	8	142574961	142579459	10	-1.6135	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6889	8	142586109	142595916	3	-1.9255	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	143558426	143823703	40	-1.331	LARGE-LOSS	FOCAL	7	"ADGRB1,ARC,JRK,LY6K,PSCA,SLURP1,THEM6"
TCGA.AG.A01L.01A	8	144102286	144102754	2	-1.6347	LARGE-LOSS	FOCAL	1	LY6E
TCGA.AG.3909.01A	8	144391584	144411509	12	-1.3986	LARGE-LOSS	FOCAL	1	TOP1MT
TCGA.AA.A01Q.01A	8	144391584	144413354	13	-1.6377	LARGE-LOSS	FOCAL	1	TOP1MT
TCGA.AA.3861.01A	8	144391584	144459517	15	-1.4997	LARGE-LOSS	FOCAL	2	"RHPN1,TOP1MT"
TCGA.AA.A00N.01A	8	144400156	144411509	7	-1.4991	LARGE-LOSS	FOCAL	1	TOP1MT
TCGA.AA.A010.01A	8	144641459	144698706	45	-1.8273	LARGE-LOSS	FOCAL	7	"EEF1D,GSDMD,MROH6,NAPRT,PYCRL,TIGD5,TSTA3"
TCGA.AG.A00H.01A	8	144772205	144773723	3	-3.3985	LARGE-LOSS	FOCAL	1	ZNF707
TCGA.AA.A010.01A	8	144798492	144812269	14	-2.0833	LARGE-LOSS	FOCAL	2	"FAM83H,MAPK15"
TCGA.AA.A010.01A	8	144886175	144892609	8	-2.067	LARGE-LOSS	FOCAL	1	SCRIB
TCGA.AA.A010.01A	8	144894385	144902764	9	-2.7434	LARGE-LOSS	FOCAL	2	"PUF60,SCRIB"
TCGA.AA.A010.01A	8	144903725	144990358	10	-2.0766	LARGE-LOSS	FOCAL	4	"EPPK1,NRBP2,PLEC,PUF60"
TCGA.AG.4009.01A	8	144919194	144996741	8	-1.4548	LARGE-LOSS	FOCAL	3	"EPPK1,NRBP2,PLEC"
TCGA.AA.A010.01A	8	144995337	145012733	18	-1.3556	LARGE-LOSS	FOCAL	1	PLEC
TCGA.AA.A010.01A	8	145047506	145066376	10	-1.7495	LARGE-LOSS	FOCAL	3	"GRINA,PARP10,PLEC"
TCGA.AA.A010.01A	8	145138617	145218642	14	-1.6231	LARGE-LOSS	FOCAL	6	"CYC1,GPAA1,HGH1,MAF1,MROH1,SHARPIN"
TCGA.AA.A010.01A	8	145310375	145584242	24	-2.2299	LARGE-LOSS	FOCAL	10	"BOP1,DGAT1,FBXL6,HGH1,HSF1,MROH1,SCRT1,SCX,SLC52A2,TMEM249"
TCGA.CA.5256	8	145683511	145687474	3	-2.6334	LARGE-LOSS	FOCAL	1	CYHR1
TCGA.DM.A0XD	8	145683511	145687474	3	-1.5668	LARGE-LOSS	FOCAL	1	CYHR1
TCGA.DY.A1DF	8	145687117	145702006	3	-3.8531	LARGE-LOSS	FOCAL	3	"CYHR1,FOXH1,KIFC2"
TCGA.AA.A00L.01A	8	146277799	146279416	3	-1.8537	LARGE-LOSS	FOCAL	1	C8orf33
TCGA.AA.A010.01A	8	146277799	146279416	3	-2.9246	LARGE-LOSS	FOCAL	1	C8orf33
TCGA.A6.3808.01A	9	14815	178769	10	-1.8452	LARGE-LOSS	FOCAL	3	"CBWD1,FOXD4,WASH1"
TCGA.A6.5665	9	417447	421979	6	-6.66	LARGE-LOSS	FOCAL	1	DOCK8
TCGA.CM.6675	9	592305	608682	11	-6.656	LARGE-LOSS	FOCAL	1	KANK1
TCGA.AA.3941	9	1062814	3274740	1574	-1.6199	LARGE-LOSS	FOCAL	5	"KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.AA.3811	9	1404636	1404921	3	-1.9471	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4315	9	1404636	1404921	3	-1.662	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2683	9	1448016	1450273	7	-5.021	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	9	1531797	1554110	22	-2.121	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	9	1535066	1554110	16	-1.7866	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	9	1552639	1554110	3	-4.2552	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2690	9	1602181	1602776	3	-1.7094	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3697	9	1816186	1816388	3	-7.4171	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	2028981	2060774	8	-2.3653	LARGE-LOSS	FOCAL	1	SMARCA2
TCGA.AA.3870	9	2089812	2091745	3	-2.176	LARGE-LOSS	FOCAL	1	SMARCA2
TCGA.AD.6888	9	2148965	2150661	3	-5.7128	LARGE-LOSS	FOCAL	1	SMARCA2
TCGA.A6.2671	9	2307615	2315130	3	-2.2315	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00O.01A	9	2644683	2648617	6	-3.8854	LARGE-LOSS	FOCAL	1	VLDLR
TCGA.AF.A56K	9	2715894	2716920	3	-2.4695	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	9	3168099	3171898	8	-2.2064	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	9	3168099	3171898	8	-2.1508	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	9	3168099	3171898	8	-1.52	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	3275783	3302400	13	-5.794	LARGE-LOSS	FOCAL	1	RFX3
TCGA.AA.3982	9	3283078	3284155	3	-7.1696	LARGE-LOSS	FOCAL	1	RFX3
TCGA.AA.3850	9	3283078	3302331	8	-5.51235	LARGE-LOSS	FOCAL	1	RFX3
TCGA.AA.3941	9	3308771	4158811	447	-1.5772	LARGE-LOSS	FOCAL	2	"GLIS3,RFX3"
TCGA.AA.3864	9	3430683	3454335	4	-1.4396	LARGE-LOSS	FOCAL	1	RFX3
TCGA.AA.3811	9	3430683	3468074	7	-1.3743	LARGE-LOSS	FOCAL	1	RFX3
TCGA.CM.6675	9	4008585	4021866	12	-4.9647	LARGE-LOSS	FOCAL	1	GLIS3
TCGA.AA.3811	9	4287233	4291758	5	-1.4095	LARGE-LOSS	FOCAL	1	GLIS3
TCGA.AA.3864	9	4290084	4291758	4	-1.6341	LARGE-LOSS	FOCAL	1	GLIS3
TCGA.AA.A00N.01A	9	4646413	4688471	8	-1.4834	LARGE-LOSS	FOCAL	3	"CDC37L1,PPAPDC2,SPATA6L"
TCGA.AA.3941	9	4959556	5322156	94	-1.947	LARGE-LOSS	FOCAL	4	"INSL4,INSL6,JAK2,RLN2"
TCGA.AA.A00N.01A	9	5029735	5185265	22	-1.3928	LARGE-LOSS	FOCAL	2	"INSL6,JAK2"
TCGA.AA.A010.01A	9	5050669	5090396	15	-1.7332	LARGE-LOSS	FOCAL	1	JAK2
TCGA.AA.A00N.01A	9	5431860	5467750	7	-1.8306	LARGE-LOSS	FOCAL	2	"CD274,PLGRKT"
TCGA.AA.A00N.01A	9	5823848	5830699	3	-1.8059	LARGE-LOSS	FOCAL	1	ERMP1
TCGA.AA.3941	9	6917476	6917651	3	-2.3479	LARGE-LOSS	FOCAL	1	KDM4C
TCGA.AA.3941	9	7504789	8228165	439	-2.171	LARGE-LOSS	FOCAL	1	TMEM261
TCGA.AA.3530	9	7725408	7729024	8	-1.7406	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	9	8108479	8117600	8	-1.4968	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	9	8179591	8180122	3	-7.053	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	9	9270378	9294414	14	-3.92575	LARGE-LOSS	FOCAL	1	PTPRD
TCGA.AA.3850	9	9662427	9687678	10	-4.22035	LARGE-LOSS	FOCAL	1	PTPRD
TCGA.AD.6889	9	10520171	10523684	3	-4.1197	LARGE-LOSS	FOCAL	1	PTPRD
TCGA.AG.3598	9	11995296	11996269	4	-1.6688	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2680	9	11995306	11996758	4	-5.5484	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A0XF	9	11996269	11996830	3	-7.1633	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6532	9	13424943	13426560	3	-3.8632	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	13610125	13718722	60	-2.1605	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	9	14092220	14093726	3	-9.88765	LARGE-LOSS	FOCAL	1	NFIB
TCGA.AA.3850	9	14236573	14242213	5	-1.52345	LARGE-LOSS	FOCAL	1	NFIB
TCGA.AA.A010.01A	9	14305908	14313419	3	-3.0393	LARGE-LOSS	FOCAL	1	NFIB
TCGA.AG.3909.01A	9	15423847	15447055	4	-1.337	LARGE-LOSS	FOCAL	1	SNAPC3
TCGA.AA.A00N.01A	9	15423847	15452992	6	-1.9184	LARGE-LOSS	FOCAL	1	SNAPC3
TCGA.A6.2672	9	16051063	16054630	5	-8.1538	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5661	9	16051758	16054630	4	-9.0579	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	9	17236364	17415734	13	-1.5197	LARGE-LOSS	FOCAL	1	CNTLN
TCGA.AA.3850	9	17450246	17506493	28	-1.64545	LARGE-LOSS	FOCAL	1	CNTLN
TCGA.AA.3850	9	17705347	17708018	8	-4.93855	LARGE-LOSS	FOCAL	1	SH3GL2
TCGA.AA.3941	9	17705347	17715039	14	-4.6304	LARGE-LOSS	FOCAL	1	SH3GL2
TCGA.AA.3850	9	17708039	17715039	6	-1.97855	LARGE-LOSS	FOCAL	1	SH3GL2
TCGA.AA.3850	9	17985591	17998104	11	-2.07385	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	17986154	17998104	10	-4.4692	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	9	18224874	18226608	3	-2.0337	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	19032799	19063459	7	-1.3443	LARGE-LOSS	FOCAL	3	"HAUS6,RRAGA,SAXO1"
TCGA.AA.A00N.01A	9	19118281	19126080	5	-1.6619	LARGE-LOSS	FOCAL	1	PLIN2
TCGA.CK.4947	9	21354179	21362517	3	-2.0006	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A69D	9	21548212	22088259	203	-3.2944	LARGE-LOSS	FOCAL	3	"CDKN2A,CDKN2B,MTAP"
TCGA.AA.3517	9	21730409	22427117	224	-4.291	LARGE-LOSS	FOCAL	3	"CDKN2A,CDKN2B,MTAP"
TCGA.AH.6644	9	24514389	24515110	4	-1.603	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3883	9	25500057	25500173	3	-1.879	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4614	9	25544990	26242135	266	-4.0741	LARGE-LOSS	FOCAL	2	"LOC100506422,TUSC1"
TCGA.AG.3594	9	25916352	25929147	3	-4.0596	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3855	9	26049347	26050658	3	-1.414	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DF	9	26521964	27142443	243	-1.3835	LARGE-LOSS	FOCAL	5	"CAAP1,IFT74,LRRC19,PLAA,TEK"
TCGA.AA.A010.01A	9	27548187	27566628	10	-2.4424	LARGE-LOSS	FOCAL	1	C9orf72
TCGA.AA.3867	9	27582850	27590142	3	-1.8018	LARGE-LOSS	FOCAL	0	None
TCGA.AG.4021	9	28198622	28338910	64	-4.8391	LARGE-LOSS	FOCAL	1	LINGO2
TCGA.AA.3811	9	28446607	28452236	3	-6.82	LARGE-LOSS	FOCAL	1	LINGO2
TCGA.AA.3982	9	28446607	28452236	3	-6.993	LARGE-LOSS	FOCAL	1	LINGO2
TCGA.AA.3982	9	28849503	28851010	4	-3.2506	LARGE-LOSS	FOCAL	1	LINGO2
TCGA.AA.3941	9	28849503	28858579	13	-5.0319	LARGE-LOSS	FOCAL	1	LINGO2
TCGA.AA.3982	9	28853124	28855510	6	-1.4871	LARGE-LOSS	FOCAL	1	LINGO2
TCGA.AA.3982	9	28855629	28858579	3	-6.905	LARGE-LOSS	FOCAL	1	LINGO2
TCGA.AG.3580	9	30074415	30117311	10	-2.3843	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6536	9	31470197	31470392	3	-2.0987	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6512	9	32746342	32746537	3	-1.3917	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	9	32895425	32898523	3	-1.8712	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	33026431	33048052	10	-2.3095	LARGE-LOSS	FOCAL	2	"DNAJA1,SMU1"
TCGA.AG.3909.01A	9	33026431	33048052	10	-1.5704	LARGE-LOSS	FOCAL	2	"DNAJA1,SMU1"
TCGA.AA.A00N.01A	9	33254978	33280746	15	-1.5144	LARGE-LOSS	FOCAL	2	"BAG1,CHMP5"
TCGA.AA.3850	9	33658615	33661285	3	-4.34455	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	34971249	34977964	7	-1.3695	LARGE-LOSS	FOCAL	1	KIAA1045
TCGA.AA.A01I.01A	9	35065206	35079092	14	-1.7327	LARGE-LOSS	FOCAL	2	"FANCG,VCP"
TCGA.AA.A01I.01A	9	35104545	35107402	6	-2.8418	LARGE-LOSS	FOCAL	1	FAM214B
TCGA.AA.3941	9	35425088	35448361	6	-2.1161	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	9	35605585	35612798	10	-1.5791	LARGE-LOSS	FOCAL	2	"CD72,TESK1"
TCGA.AA.A010.01A	9	35605585	35617974	14	-2.2352	LARGE-LOSS	FOCAL	2	"CD72,TESK1"
TCGA.AG.3909.01A	9	35660358	35679144	13	-1.4344	LARGE-LOSS	FOCAL	3	"ARHGEF39,CA9,CCDC107"
TCGA.AA.A00N.01A	9	35720367	35834450	68	-1.3392	LARGE-LOSS	FOCAL	10	"CREB3,FAM221B,GBA2,HINT2,MSMP,NPR2,RGP1,SPAG8,TLN1,TMEM8B"
TCGA.AF.3914.01A	9	35732722	35793846	29	-1.4853	LARGE-LOSS	FOCAL	5	"CREB3,GBA2,MSMP,NPR2,RGP1"
TCGA.AG.A02G.01A	9	35744297	35744560	2	-6.5589	LARGE-LOSS	FOCAL	1	GBA2
TCGA.AA.A010.01A	9	35792366	35802155	10	-2.0655	LARGE-LOSS	FOCAL	1	NPR2
TCGA.AA.A010.01A	9	35802453	35810478	11	-1.7235	LARGE-LOSS	FOCAL	2	"NPR2,SPAG8"
TCGA.A6.6653	9	37033360	37034668	3	-2.0033	LARGE-LOSS	FOCAL	1	PAX5
TCGA.AA.3543	9	37033360	37034668	3	-5.5706	LARGE-LOSS	FOCAL	1	PAX5
TCGA.AA.3877	9	37033360	37034668	3	-3.1991	LARGE-LOSS	FOCAL	1	PAX5
TCGA.AA.A022	9	37033360	37034668	3	-1.6484	LARGE-LOSS	FOCAL	1	PAX5
TCGA.AA.3956	9	37312953	37331604	3	-4.1422	LARGE-LOSS	FOCAL	1	ZCCHC7
TCGA.AA.3982	9	37312953	37331604	3	-3.9939	LARGE-LOSS	FOCAL	1	ZCCHC7
TCGA.AA.3870	9	37330895	37349070	3	-1.7691	LARGE-LOSS	FOCAL	1	ZCCHC7
TCGA.AA.3972	9	37330895	37349070	3	-3.7297	LARGE-LOSS	FOCAL	1	ZCCHC7
TCGA.AA.3989	9	37330895	37349070	3	-2.0143	LARGE-LOSS	FOCAL	1	ZCCHC7
TCGA.AA.A01I.01A	9	37500778	37502988	3	-3.9666	LARGE-LOSS	FOCAL	1	POLR1E
TCGA.AG.A023.01A	9	37500778	37502988	3	-2.5139	LARGE-LOSS	FOCAL	1	POLR1E
TCGA.AA.A00N.01A	9	37744339	37783874	12	-1.5636	LARGE-LOSS	FOCAL	3	"EXOSC3,FRMPD1,TRMT10B"
TCGA.CK.4950	9	38488918	38504744	3	-6.5607	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3712	9	44795318	44830238	3	-7.0501	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6808	9	44795318	44830238	3	-1.6095	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3809	9	44827044	69827538	11	-2.7232	LARGE-LOSS	FOCAL	8	"ANKRD20A1,ANKRD20A3,ANKRD20A4,CBWD5,CBWD6,FOXD4L6,SPATA31A5,SPATA31A7"
TCGA.CK.4952.01A	9	45623645	45624397	3	-4.6725	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6514	9	68324146	69827538	3	-5.1464	LARGE-LOSS	FOCAL	4	"ANKRD20A4,CBWD5,CBWD6,FOXD4L6"
TCGA.AA.3819	9	69492990	69827538	3	-2.3528	LARGE-LOSS	FOCAL	0	None
TCGA.AF.5654	9	69492990	69827538	3	-5.6077	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	71606008	71668008	6	-2.1117	LARGE-LOSS	FOCAL	3	"FXN,PIP5K1B,PRKACG"
TCGA.AA.A010.01A	9	72130876	72365648	7	-1.633	LARGE-LOSS	FOCAL	2	"APBA1,PTAR1"
TCGA.AY.A71X	9	73090915	73091848	3	-6.9147	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6512	9	73989439	73996333	3	-1.7764	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	74970837	74975506	5	-1.6459	LARGE-LOSS	FOCAL	1	ZFAND5
TCGA.AA.A00N.01A	9	75406815	75450846	7	-1.6791	LARGE-LOSS	FOCAL	1	TMC1
TCGA.AG.4009.01A	9	75420248	75450846	6	-1.4523	LARGE-LOSS	FOCAL	1	TMC1
TCGA.AA.A010.01A	9	75430995	75516063	6	-1.8646	LARGE-LOSS	FOCAL	2	"ALDH1A1,TMC1"
TCGA.AA.3941	9	75963829	75983170	4	-2.9343	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	76187084	76188255	3	-5.3276	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3956	9	76305195	76310250	3	-4.5198	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	76305195	76310438	4	-7.6321	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	9	76305195	76316340	5	-1.8551	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	9	76305195	76316340	5	-2.0639	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	9	79264146	79271508	7	-1.41725	LARGE-LOSS	FOCAL	1	PRUNE2
TCGA.AA.3850	9	81083896	81085030	4	-2.03275	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3848	9	82574272	82609824	14	-1.9204	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	86523330	86593042	21	-1.5399	LARGE-LOSS	FOCAL	3	"C9orf64,HNRNPK,KIF27"
TCGA.AA.A00N.01A	9	88880907	88967563	29	-1.324	LARGE-LOSS	FOCAL	2	"ISCA1,ZCCHC6"
TCGA.AG.3909.01A	9	88889034	88933822	12	-1.5013	LARGE-LOSS	FOCAL	2	"ISCA1,ZCCHC6"
TCGA.AA.3941	9	89678530	89683169	3	-4.5267	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	9	89683060	89684032	4	-1.6429	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	9	89683169	89684032	3	-4.3335	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	9	90342472	90387872	8	-1.5948	LARGE-LOSS	FOCAL	1	CTSL
TCGA.AA.A00N.01A	9	90342472	90388388	9	-1.4148	LARGE-LOSS	FOCAL	1	CTSL
TCGA.A6.3808.01A	9	90534118	90582339	9	-2.3484	LARGE-LOSS	FOCAL	2	"CDK20,SPATA31C1"
TCGA.AA.A00N.01A	9	91926137	91954723	11	-1.578	LARGE-LOSS	FOCAL	2	"CKS2,SECISBP2"
TCGA.AA.3941	9	93117314	93121234	3	-5.0996	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	9	93752521	93752812	3	-1.5917	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	94047813	94049755	3	-1.5768	LARGE-LOSS	FOCAL	1	AUH
TCGA.AA.A00N.01A	9	94118112	94172378	4	-1.5425	LARGE-LOSS	FOCAL	2	"AUH,NFIL3"
TCGA.AA.A010.01A	9	96209835	96238481	6	-1.7346	LARGE-LOSS	FOCAL	2	"FAM120A,FAM120AOS"
TCGA.A6.3808.01A	9	96420371	96435839	8	-2.2997	LARGE-LOSS	FOCAL	1	PHF2
TCGA.A6.2672	9	98222664	98284174	14	-4.428	LARGE-LOSS	FOCAL	1	PTCH1
TCGA.AA.3850	9	98701800	98734268	11	-1.47945	LARGE-LOSS	FOCAL	1	ERCC6L2
TCGA.AA.A00N.01A	9	99324925	99416940	11	-1.3765	LARGE-LOSS	FOCAL	2	"AAED1,CDC14B"
TCGA.AA.A010.01A	9	99380740	99416940	7	-1.7125	LARGE-LOSS	FOCAL	2	"AAED1,CDC14B"
TCGA.AA.3850	9	99551624	99567383	3	-2.59425	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	99795184	99800173	6	-1.9774	LARGE-LOSS	FOCAL	1	CTSV
TCGA.AG.3909.01A	9	99795184	99800173	6	-1.5749	LARGE-LOSS	FOCAL	1	CTSV
TCGA.AA.3696	9	100158459	100161756	3	-3.9441	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6889	9	100158459	100161756	3	-1.6963	LARGE-LOSS	FOCAL	0	None
TCGA.G5.6235	9	100158459	100161756	3	-1.8147	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	100243073	100257918	4	-2.2284	LARGE-LOSS	FOCAL	1	TDRD7
TCGA.AA.A010.01A	9	100616227	100618489	3	-1.4871	LARGE-LOSS	FOCAL	1	FOXE1
TCGA.AA.A02Y	9	101560557	101562913	3	-1.827	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6889	9	101731808	101742100	4	-1.8664	LARGE-LOSS	FOCAL	1	COL15A1
TCGA.AA.A01I.01A	9	101796813	101800882	5	-3.4256	LARGE-LOSS	FOCAL	1	COL15A1
TCGA.AA.A010.01A	9	102588967	102690994	9	-1.4323	LARGE-LOSS	FOCAL	2	"NR4A3,STX17"
TCGA.AA.A010.01A	9	103204174	103260999	5	-1.6751	LARGE-LOSS	FOCAL	3	"MSANTD3,MSANTD3-TMEFF1,TMEFF1"
TCGA.AA.3543	9	103360474	103363773	3	-6.8922	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3956	9	104757384	104760763	3	-2.6493	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	9	106688184	106697163	3	-2.5636	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	9	106688184	106697163	3	-4.5153	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	106857647	106864668	7	-1.7503	LARGE-LOSS	FOCAL	1	SMC2
TCGA.DC.5869	9	107364420	107365894	3	-4.5037	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A6GA	9	107364968	107366118	3	-7.7523	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	107513199	107535048	9	-1.5879	LARGE-LOSS	FOCAL	2	"NIPSNAP3A,NIPSNAP3B"
TCGA.AG.3909.01A	9	107513199	107535048	8	-1.3991	LARGE-LOSS	FOCAL	2	"NIPSNAP3A,NIPSNAP3B"
TCGA.AA.A00N.01A	9	107607703	107651330	7	-1.5005	LARGE-LOSS	FOCAL	1	ABCA1
TCGA.AA.A010.01A	9	107607703	107651330	7	-2.0817	LARGE-LOSS	FOCAL	1	ABCA1
TCGA.AA.A010.01A	9	108268683	108308622	7	-1.4849	LARGE-LOSS	FOCAL	1	FSD1L
TCGA.AA.3850	9	108293222	108293315	3	-2.10145	LARGE-LOSS	FOCAL	1	FSD1L
TCGA.AA.3982	9	108900793	108902685	4	-2.0808	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	9	109472693	109481440	13	-1.565	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	9	109477385	109479278	9	-1.90175	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	111681485	111712739	14	-1.379	LARGE-LOSS	FOCAL	3	"CTNNAL1,FAM206A,IKBKAP"
TCGA.AA.3517	9	112553959	113422418	426	-1.6003	LARGE-LOSS	FOCAL	7	"AKAP2,C9orf152,PALM2,PALM2-AKAP2,SVEP1,TXN,TXNDC8"
TCGA.A6.3808.01A	9	113006390	113013591	4	-3.1796	LARGE-LOSS	FOCAL	1	TXN
TCGA.AA.A010.01A	9	113006390	113018615	5	-2.3057	LARGE-LOSS	FOCAL	1	TXN
TCGA.AA.A00N.01A	9	113006390	113066683	7	-1.3658	LARGE-LOSS	FOCAL	2	"TXN,TXNDC8"
TCGA.AA.3982	9	113298822	113303040	7	-2.19	LARGE-LOSS	FOCAL	1	SVEP1
TCGA.AA.3941	9	113298822	113304319	9	-1.791	LARGE-LOSS	FOCAL	1	SVEP1
TCGA.AA.3956	9	113300976	113302358	3	-2.1307	LARGE-LOSS	FOCAL	1	SVEP1
TCGA.AA.3864	9	113300976	113303040	5	-2.161	LARGE-LOSS	FOCAL	1	SVEP1
TCGA.A6.6140	9	113356462	113358932	3	-3.8563	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	113379407	113380436	3	-5.0082	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	9	113379407	113380771	4	-2.7872	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	9	113379407	113380892	5	-2.0555	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	113419630	113448337	6	-1.3975	LARGE-LOSS	FOCAL	1	MUSK
TCGA.AA.A010.01A	9	114213667	114246228	3	-1.9629	LARGE-LOSS	FOCAL	1	KIAA0368
TCGA.AA.A00N.01A	9	114345713	114415328	13	-1.9954	LARGE-LOSS	FOCAL	3	"DNAJC25,DNAJC25-GNG10,PTGR1"
TCGA.AA.A010.01A	9	114405076	114467480	14	-1.447	LARGE-LOSS	FOCAL	4	"C9orf84,DNAJC25,DNAJC25-GNG10,GNG10"
TCGA.AA.A010.01A	9	115232661	115248649	3	-2.8389	LARGE-LOSS	FOCAL	1	HSDL2
TCGA.5M.AAT5	9	115671687	115674591	3	-1.3912	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	115805028	115818785	5	-2.3051	LARGE-LOSS	FOCAL	1	ZFP37
TCGA.NH.A6GA	9	115854518	115866945	10	-4.2592	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	9	116654623	116655237	3	-1.592	LARGE-LOSS	FOCAL	1	ZNF618
TCGA.AA.A010.01A	9	116918163	116956623	6	-1.4031	LARGE-LOSS	FOCAL	1	COL27A1
TCGA.AA.3862.01A	9	116924951	117045924	36	-1.3301	LARGE-LOSS	FOCAL	1	COL27A1
TCGA.AA.3861.01A	9	116924951	117068793	50	-1.357	LARGE-LOSS	FOCAL	1	COL27A1
TCGA.AA.A010.01A	9	117354845	117400773	9	-1.6245	LARGE-LOSS	FOCAL	2	"ATP6V1G1,C9orf91"
TCGA.AA.A01K.01A	9	117838259	117838632	2	-5.3238	LARGE-LOSS	FOCAL	1	TNC
TCGA.AA.3530	9	118401362	118405199	3	-4.8518	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	9	118401362	118405199	3	-4.3281	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	9	118401362	118405436	4	-2.0957	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	9	118404040	118405436	3	-1.6843	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	9	119794991	119799667	5	-1.56865	LARGE-LOSS	FOCAL	1	ASTN2
TCGA.AA.3850	9	119917658	119920066	5	-3.08985	LARGE-LOSS	FOCAL	1	ASTN2
TCGA.AA.3864	9	120389464	120391987	3	-1.5203	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	9	121224730	121226621	4	-1.6812	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	123620225	123676446	19	-1.9181	LARGE-LOSS	FOCAL	2	"PHF19,TRAF1"
TCGA.AA.A010.01A	9	123935534	124045850	12	-1.6239	LARGE-LOSS	FOCAL	3	"CNTRL,GSN,RAB14"
TCGA.AG.3909.01A	9	124543700	124545739	3	-1.6188	LARGE-LOSS	FOCAL	1	DAB2IP
TCGA.A6.5661	9	124685380	124882284	75	-1.4508	LARGE-LOSS	FOCAL	1	TTLL11
TCGA.AA.A010.01A	9	125004116	125014077	4	-2.0291	LARGE-LOSS	FOCAL	1	RBM18
TCGA.A6.3808.01A	9	125611857	125616756	5	-2.8401	LARGE-LOSS	FOCAL	1	RC3H2
TCGA.AA.A00N.01A	9	125611857	125627591	11	-2.4132	LARGE-LOSS	FOCAL	1	RC3H2
TCGA.AG.3909.01A	9	125611857	125627591	11	-1.6055	LARGE-LOSS	FOCAL	1	RC3H2
TCGA.D5.6923	9	127090121	127097975	3	-2.1067	LARGE-LOSS	FOCAL	1	NEK6
TCGA.AA.A010.01A	9	127262352	127286950	5	-2.1973	LARGE-LOSS	FOCAL	2	"NR5A1,NR6A1"
TCGA.A6.5660	9	128772506	128782270	3	-5.8937	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	9	130453004	130501922	32	-1.5271	LARGE-LOSS	FOCAL	6	"C9orf117,PTRH1,SH2D3C,STXBP1,TOR2A,TTC16"
TCGA.AA.3815.01A	9	130474052	130474441	2	-1.3454	LARGE-LOSS	FOCAL	1	C9orf117
TCGA.AA.A010.01A	9	130502500	130566517	21	-1.9009	LARGE-LOSS	FOCAL	3	"CDK9,FPGS,SH2D3C"
TCGA.AA.A010.01A	9	130648771	130678616	11	-1.8827	LARGE-LOSS	FOCAL	2	"ST6GALNAC4,ST6GALNAC6"
TCGA.AA.A010.01A	9	131087369	131154868	24	-1.6375	LARGE-LOSS	FOCAL	3	"COQ4,SLC27A4,URM1"
TCGA.AA.A02R.01A	9	131114869	131115643	3	-5.1714	LARGE-LOSS	FOCAL	1	SLC27A4
TCGA.AG.A00H.01A	9	131114869	131115643	3	-4.8527	LARGE-LOSS	FOCAL	1	SLC27A4
TCGA.AG.A02X.01A	9	131114869	131115643	3	-4.365	LARGE-LOSS	FOCAL	1	SLC27A4
TCGA.AA.A01I.01A	9	131150051	131151893	3	-4.848	LARGE-LOSS	FOCAL	1	URM1
TCGA.AA.A00N.01A	9	131446128	131456835	9	-2.0093	LARGE-LOSS	FOCAL	1	SET
TCGA.AA.A010.01A	9	131446128	131456835	10	-2.7902	LARGE-LOSS	FOCAL	1	SET
TCGA.A6.3808.01A	9	131453389	131456285	5	-3.8776	LARGE-LOSS	FOCAL	1	SET
TCGA.AA.A00N.01A	9	131711405	131731631	8	-1.4351	LARGE-LOSS	FOCAL	1	NUP188
TCGA.AA.A01I.01A	9	131760372	131761871	4	-3.8478	LARGE-LOSS	FOCAL	1	NUP188
TCGA.AA.A010.01A	9	131774490	131804372	11	-1.4107	LARGE-LOSS	FOCAL	2	"FAM73B,SH3GLB2"
TCGA.G4.6302	9	132162452	132167951	3	-1.6699	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	9	132566334	132590386	9	-1.4711	LARGE-LOSS	FOCAL	3	"C9orf78,TOR1A,TOR1B"
TCGA.AA.A00N.01A	9	132566334	132596919	16	-1.7412	LARGE-LOSS	FOCAL	3	"C9orf78,TOR1A,TOR1B"
TCGA.AG.A025.01A	9	132580797	132581073	2	-6.3552	LARGE-LOSS	FOCAL	1	TOR1A
TCGA.AA.3819	9	133262820	133264095	3	-1.4431	LARGE-LOSS	FOCAL	1	HMCN2
TCGA.AA.A010.01A	9	133541973	133730151	17	-1.5487	LARGE-LOSS	FOCAL	3	"ABL1,EXOSC2,PRDM12"
TCGA.AA.A010.01A	9	134136227	134307954	9	-1.5353	LARGE-LOSS	FOCAL	3	"FAM78A,PPAPDC3,PRRC2B"
TCGA.AG.3909.01A	9	134379559	134387384	8	-1.4212	LARGE-LOSS	FOCAL	1	POMT1
TCGA.AA.A017.01A	9	134393556	134394175	2	-4.7937	LARGE-LOSS	FOCAL	1	POMT1
TCGA.AA.A010.01A	9	135927399	135937350	8	-1.3256	LARGE-LOSS	FOCAL	1	GTF3C5
TCGA.AA.A010.01A	9	135939779	136037668	33	-2.0096	LARGE-LOSS	FOCAL	3	"CEL,GBGT1,RALGDS"
TCGA.A6.3808.01A	9	136214999	136260675	30	-1.5481	LARGE-LOSS	FOCAL	6	"MED22,RPL7A,STKLD1,SURF1,SURF2,SURF4"
TCGA.AG.A02X.01A	9	136594848	136596400	3	-5.3203	LARGE-LOSS	FOCAL	1	SARDH
TCGA.AA.3861.01A	9	136629121	136899776	28	-1.4925	LARGE-LOSS	FOCAL	2	"BRD3,VAV2"
TCGA.AA.A010.01A	9	136916637	137017039	11	-2.2649	LARGE-LOSS	FOCAL	2	"BRD3,WDR5"
TCGA.AA.A00N.01A	9	136916637	137022976	16	-1.4643	LARGE-LOSS	FOCAL	2	"BRD3,WDR5"
TCGA.AA.3862.01A	9	137623295	137686864	25	-1.4922	LARGE-LOSS	FOCAL	1	COL5A1
TCGA.AA.3861.01A	9	137623295	137690179	27	-1.6921	LARGE-LOSS	FOCAL	1	COL5A1
TCGA.AG.A026	9	137848361	138039128	94	-1.907	LARGE-LOSS	FOCAL	1	OLFM1
TCGA.AA.A010.01A	9	137967539	137990112	9	-2.3369	LARGE-LOSS	FOCAL	1	OLFM1
TCGA.A6.3808.01A	9	137981994	138395371	19	-1.8523	LARGE-LOSS	FOCAL	5	"C9orf116,C9orf62,MRPS2,OLFM1,PPP1R26"
TCGA.AA.A010.01A	9	138376310	138391227	7	-2.1317	LARGE-LOSS	FOCAL	2	"C9orf116,PPP1R26"
TCGA.AA.A010.01A	9	138585396	138657439	21	-1.4834	LARGE-LOSS	FOCAL	2	"KCNT1,SOHLH1"
TCGA.AA.A010.01A	9	138773427	139243087	43	-1.4789	LARGE-LOSS	FOCAL	7	"C9orf69,CAMSAP1,GPSM1,LHX3,NACC2,QSOX2,UBAC1"
TCGA.A6.3808.01A	9	139264738	139307205	38	-2.1726	LARGE-LOSS	FOCAL	4	"CARD9,PMPCA,SDCCAG3,SNAPC4"
TCGA.AA.A010.01A	9	139278353	139290038	11	-1.6858	LARGE-LOSS	FOCAL	1	SNAPC4
TCGA.AA.A010.01A	9	139291356	139298467	4	-2.1868	LARGE-LOSS	FOCAL	2	"SDCCAG3,SNAPC4"
TCGA.AA.A010.01A	9	139299018	139312415	15	-2.9506	LARGE-LOSS	FOCAL	2	"PMPCA,SDCCAG3"
TCGA.AA.A00O.01A	9	139304309	139307205	4	-4.641	LARGE-LOSS	FOCAL	2	"PMPCA,SDCCAG3"
TCGA.AA.A01Q.01A	9	139306417	139310704	5	-1.4573	LARGE-LOSS	FOCAL	1	PMPCA
TCGA.AA.A010.01A	9	139312967	139325437	7	-2.2131	LARGE-LOSS	FOCAL	2	"INPP5E,PMPCA"
TCGA.AA.A010.01A	9	139326239	139358832	28	-1.7118	LARGE-LOSS	FOCAL	2	"INPP5E,SEC16A"
TCGA.DM.A28A	9	139327857	139341611	3	-1.5594	LARGE-LOSS	FOCAL	2	"INPP5E,SEC16A"
TCGA.AA.A02H.01A	9	139341275	139342504	5	-3.5086	LARGE-LOSS	FOCAL	1	SEC16A
TCGA.AG.A015.01A	9	139341275	139342504	5	-1.8354	LARGE-LOSS	FOCAL	1	SEC16A
TCGA.AA.A010.01A	9	139438419	139571838	15	-2.1464	LARGE-LOSS	FOCAL	3	"AGPAT2,EGFL7,NOTCH1"
TCGA.AA.A010.01A	9	139581621	139686129	27	-1.3732	LARGE-LOSS	FOCAL	7	"AGPAT2,FAM69B,LCN10,LCN15,LCN6,LCN8,TMEM141"
TCGA.AA.A010.01A	9	139686656	139758218	46	-2.289	LARGE-LOSS	FOCAL	7	"C9orf172,CCDC183,EDF1,MAMDC4,PHPT1,RABL6,TMEM141"
TCGA.AA.A010.01A	9	139902309	139908263	8	-1.566	LARGE-LOSS	FOCAL	1	ABCA2
TCGA.A6.3808.01A	9	139902820	139974407	43	-2.6242	LARGE-LOSS	FOCAL	7	"ABCA2,C9orf139,ENTPD2,FUT7,NPDC1,SAPCD2,UAP1L1"
TCGA.AA.A010.01A	9	139908630	139915156	10	-1.8979	LARGE-LOSS	FOCAL	1	ABCA2
TCGA.AA.A010.01A	9	139915847	140008678	48	-2.3036	LARGE-LOSS	FOCAL	9	"ABCA2,C9orf139,DPP7,ENTPD2,FUT7,MAN1B1,NPDC1,SAPCD2,UAP1L1"
TCGA.AA.A01Q.01A	9	139994110	140007126	11	-1.341	LARGE-LOSS	FOCAL	2	"DPP7,MAN1B1"
TCGA.AA.A010.01A	9	140033890	140082816	28	-1.6267	LARGE-LOSS	FOCAL	4	"ANAPC2,GRIN1,LRRC26,TMEM210"
TCGA.AA.A010.01A	9	140083491	140145690	33	-2.4679	LARGE-LOSS	FOCAL	10	"CYSRT1,FAM166A,NDOR1,RNF208,RNF224,SLC34A3,SSNA1,TMEM203,TPRN,TUBB4B"
TCGA.AA.A010.01A	9	140146221	140218472	24	-1.9247	LARGE-LOSS	FOCAL	5	"C9orf173,EXD3,NELFB,NRARP,TOR4A"
TCGA.AA.A010.01A	9	140344323	140372434	20	-1.7233	LARGE-LOSS	FOCAL	2	"NSMF,PNPLA7"
TCGA.AA.A010.01A	9	140387403	140510084	39	-2.2772	LARGE-LOSS	FOCAL	5	"ARRDC1,DPH7,MRPL41,PNPLA7,ZMYND19"
TCGA.AA.A010.01A	9	140772339	140777147	3	-2.2909	LARGE-LOSS	FOCAL	1	CACNA1B
TCGA.AA.A010.01A	9	140901170	140946496	10	-1.5882	LARGE-LOSS	FOCAL	1	CACNA1B
TCGA.AA.A00N.01A	10	1087110	1094152	5	-2.1311	LARGE-LOSS	FOCAL	1	IDI1
TCGA.AA.A01K.01A	10	3175358	3177877	3	-6.5055	LARGE-LOSS	FOCAL	1	PFKP
TCGA.AA.A00N.01A	10	3199080	3212257	11	-1.3497	LARGE-LOSS	FOCAL	1	PITRM1
TCGA.CM.4752	10	4126114	4129295	3	-4.4581	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	10	4282918	4284195	3	-3.15385	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	10	4809007	4813210	6	-3.44315	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	10	4872826	4889600	10	-1.6175	LARGE-LOSS	FOCAL	1	AKR1E2
TCGA.A6.3808.01A	10	4889280	5041329	17	-1.844	LARGE-LOSS	FOCAL	3	"AKR1C1,AKR1C2,AKR1E2"
TCGA.A6.5665	10	4927651	4942735	7	-7.2687	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	5014353	5041329	10	-2.1528	LARGE-LOSS	FOCAL	2	"AKR1C1,AKR1C2"
TCGA.AA.A00N.01A	10	5017986	5033963	4	-1.7086	LARGE-LOSS	FOCAL	2	"AKR1C1,AKR1C2"
TCGA.AA.3850	10	5134042	5139684	9	-2.44675	LARGE-LOSS	FOCAL	1	AKR1C3
TCGA.AG.A01N.01A	10	5967283	5969348	2	-5.2023	LARGE-LOSS	FOCAL	1	FBXO18
TCGA.AA.A010.01A	10	6245165	6261485	7	-1.6204	LARGE-LOSS	FOCAL	1	PFKFB3
TCGA.AA.3850	10	6650990	6653935	5	-1.58155	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3807	10	6657774	6664153	4	-1.7643	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	6699192	6699772	3	-1.6174	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	6940547	6940742	3	-2.3729	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	7007170	7013215	4	-1.645	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	10	7604986	7627816	8	-1.4875	LARGE-LOSS	FOCAL	1	ITIH5
TCGA.AA.A01K.01A	10	7614226	7621688	4	-3.3201	LARGE-LOSS	FOCAL	1	ITIH5
TCGA.AG.3909.01A	10	7838001	7866233	9	-1.4961	LARGE-LOSS	FOCAL	2	"ATP5C1,TAF3"
TCGA.AA.3811	10	9085625	9089026	3	-4.4242	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	10	9085625	9090224	5	-2.1728	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	11639535	11911477	9	-1.8342	LARGE-LOSS	FOCAL	3	"ECHDC3,PROSER2,USP6NL"
TCGA.A6.5665	10	12580514	12583311	9	-6.4535	LARGE-LOSS	FOCAL	1	CAMK1D
TCGA.G4.6322	10	12582518	12616861	33	-5.3774	LARGE-LOSS	FOCAL	1	CAMK1D
TCGA.AA.3973	10	12701941	12703939	3	-4.1378	LARGE-LOSS	FOCAL	1	CAMK1D
TCGA.AG.3909.01A	10	13333796	13361110	5	-1.3349	LARGE-LOSS	FOCAL	2	"PHYH,SEPHS1"
TCGA.AA.A010.01A	10	13370299	13386709	6	-2.1974	LARGE-LOSS	FOCAL	1	SEPHS1
TCGA.AG.A02G.01A	10	13386709	13481145	2	-6.0724	LARGE-LOSS	FOCAL	2	"BEND7,SEPHS1"
TCGA.AA.A010.01A	10	13672220	13716870	10	-1.946	LARGE-LOSS	FOCAL	2	"FRMD4A,PRPF18"
TCGA.AA.3833	10	14442346	14443648	3	-1.5413	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	16040460	16049472	3	-2.0142	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5665	10	16790640	16823261	28	-3.343	LARGE-LOSS	FOCAL	1	RSU1
TCGA.AA.3850	10	17185568	17192711	4	-3.59655	LARGE-LOSS	FOCAL	1	TRDMT1
TCGA.AA.A00N.01A	10	17272569	17279213	7	-1.6577	LARGE-LOSS	FOCAL	1	VIM
TCGA.AA.3989	10	17343389	17345937	3	-1.355	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	10	17865072	18060247	12	-1.6371	LARGE-LOSS	FOCAL	2	"MRC1,TMEM236"
TCGA.AG.4009.01A	10	17908574	17922490	3	-2.2058	LARGE-LOSS	FOCAL	1	MRC1
TCGA.CK.4952.01A	10	18100253	18236422	12	-4.6291	LARGE-LOSS	FOCAL	1	MRC1
TCGA.CK.5914.01A	10	18112032	18133981	5	-1.3627	LARGE-LOSS	FOCAL	1	MRC1
TCGA.DM.A28M.01A	10	18155452	18168613	2	-2.2342	LARGE-LOSS	FOCAL	1	MRC1
TCGA.A6.3810.01A	10	18168613	18198154	5	-1.4571	LARGE-LOSS	FOCAL	1	MRC1
TCGA.AA.3811	10	18388400	18392884	3	-1.9104	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	18388400	18392979	4	-1.7007	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	18491527	18492186	3	-1.5224	LARGE-LOSS	FOCAL	1	CACNB2
TCGA.AG.4009.01A	10	21804044	21827705	5	-1.5191	LARGE-LOSS	FOCAL	2	"MLLT10,SKIDA1"
TCGA.AA.A010.01A	10	21804044	21845564	6	-2.9755	LARGE-LOSS	FOCAL	2	"MLLT10,SKIDA1"
TCGA.AA.A010.01A	10	22605298	22618232	10	-3.3317	LARGE-LOSS	FOCAL	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AA.A00N.01A	10	22606766	22618232	9	-2.5131	LARGE-LOSS	FOCAL	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.CK.5914.01A	10	22606766	22618232	9	-1.981	LARGE-LOSS	FOCAL	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AG.4009.01A	10	22606766	22634463	10	-1.6616	LARGE-LOSS	FOCAL	4	"BMI1,COMMD3,COMMD3-BMI1,SPAG6"
TCGA.AG.3909.01A	10	22615409	22618232	6	-1.5023	LARGE-LOSS	FOCAL	2	"BMI1,COMMD3-BMI1"
TCGA.AA.A01K.01A	10	23292123	23297717	4	-2.1672	LARGE-LOSS	FOCAL	1	ARMC3
TCGA.AA.A02E.01A	10	23297158	23297717	2	-5.3474	LARGE-LOSS	FOCAL	1	ARMC3
TCGA.AA.A010.01A	10	23481433	23512459	5	-2.0741	LARGE-LOSS	FOCAL	1	PTF1A
TCGA.AA.3941	10	24137980	24172107	16	-2.5197	LARGE-LOSS	FOCAL	1	KIAA1217
TCGA.AA.3941	10	24309278	24313391	4	-2.8419	LARGE-LOSS	FOCAL	1	KIAA1217
TCGA.AG.A032.01A	10	24883864	24889568	6	-1.7901	LARGE-LOSS	FOCAL	1	ARHGAP21
TCGA.AA.A010.01A	10	24911590	25010701	7	-2.071	LARGE-LOSS	FOCAL	1	ARHGAP21
TCGA.AA.3941	10	25775840	25780226	7	-1.3532	LARGE-LOSS	FOCAL	1	GPR158
TCGA.D5.5538	10	26053757	26061968	3	-1.5246	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	10	26310455	26312823	6	-1.4406	LARGE-LOSS	FOCAL	1	MYO3A
TCGA.AA.A010.01A	10	26848982	26855869	4	-2.4767	LARGE-LOSS	FOCAL	1	APBB1IP
TCGA.AA.3844	10	26971159	26971878	3	-1.9741	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	10	26971159	26971878	3	-3.0144	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01K.01A	10	27448500	27454316	4	-2.7392	LARGE-LOSS	FOCAL	1	MASTL
TCGA.AA.3850	10	27814552	27821003	4	-1.57705	LARGE-LOSS	FOCAL	1	RAB18
TCGA.AA.3844	10	27820209	27821003	3	-2.0115	LARGE-LOSS	FOCAL	1	RAB18
TCGA.AA.A010.01A	10	28822433	28824459	3	-2.2398	LARGE-LOSS	FOCAL	1	WAC
TCGA.AA.A01K.01A	10	29759155	29773568	6	-1.6127	LARGE-LOSS	FOCAL	1	SVIL
TCGA.AA.A01K.01A	10	29774982	29775297	2	-5.5276	LARGE-LOSS	FOCAL	1	SVIL
TCGA.AA.A01Z	10	29881402	29884085	3	-1.7423	LARGE-LOSS	FOCAL	1	SVIL
TCGA.CA.5254	10	30101218	30103770	3	-4.7599	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2685	10	30149456	30150121	3	-4.0715	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2686	10	30149456	30150121	3	-1.3962	LARGE-LOSS	FOCAL	0	None
TCGA.AH.6897	10	32179274	32199369	3	-4.3511	LARGE-LOSS	FOCAL	1	ARHGAP12
TCGA.DC.6683	10	34488363	34491849	5	-1.3706	LARGE-LOSS	FOCAL	1	PARD3
TCGA.A6.3808.01A	10	36812297	37481918	19	-1.4668	LARGE-LOSS	FOCAL	1	ANKRD30A
TCGA.AA.3850	10	37498226	37508449	3	-2.42895	LARGE-LOSS	FOCAL	1	ANKRD30A
TCGA.AA.3850	10	37892943	37894259	3	-2.37235	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	38672064	38681890	3	-2.47	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	10	38987168	42523460	10	-3.18865	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	10	42469893	42502345	5	-2.317	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	42477858	42478877	3	-2.3201	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	10	42477858	42478877	3	-4.4886	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01I.01A	10	43600381	43604489	3	-2.797	LARGE-LOSS	FOCAL	1	RET
TCGA.AG.3909.01A	10	43617333	43623513	5	-1.3549	LARGE-LOSS	FOCAL	1	RET
TCGA.AG.3909.01A	10	44104010	44141450	5	-1.521	LARGE-LOSS	FOCAL	2	"ZNF32,ZNF485"
TCGA.AA.A01Q.01A	10	44871332	44876169	3	-1.7302	LARGE-LOSS	FOCAL	1	CXCL12
TCGA.AA.3861.01A	10	44871332	45429043	7	-1.9648	LARGE-LOSS	FOCAL	2	"CXCL12,TMEM72"
TCGA.AA.3862.01A	10	44871332	45429043	7	-1.9716	LARGE-LOSS	FOCAL	2	"CXCL12,TMEM72"
TCGA.AA.3872	10	45221504	45227647	3	-2.3064	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	10	45221504	45227647	3	-1.401	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	45484695	45500160	9	-1.7672	LARGE-LOSS	FOCAL	3	"C10orf25,RASSF4,ZNF22"
TCGA.AG.3909.01A	10	45877889	45938468	9	-1.7023	LARGE-LOSS	FOCAL	1	ALOX5
TCGA.CK.4952.01A	10	46031669	46095430	2	-3.9411	LARGE-LOSS	FOCAL	1	8-Mar
TCGA.AH.6644	10	46215765	47006368	4	-1.4172	LARGE-LOSS	FOCAL	5	"AGAP4,FAM21C,GPRIN2,PTPN20,SYT15"
TCGA.A6.3808.01A	10	46224303	46918526	24	-2.6505	LARGE-LOSS	FOCAL	3	"AGAP4,FAM21C,PTPN20"
TCGA.AA.3695	10	46691158	46995473	4	-4.1536	LARGE-LOSS	FOCAL	2	"GPRIN2,SYT15"
TCGA.AA.A02Y	10	46943376	46995473	3	-3.85	LARGE-LOSS	FOCAL	2	"GPRIN2,SYT15"
TCGA.DY.A1DF	10	46977565	47546129	14	-1.3788	LARGE-LOSS	FOCAL	7	"AGAP9,ANXA8,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R"
TCGA.EI.6881	10	46977565	47546129	17	-1.6872	LARGE-LOSS	FOCAL	7	"AGAP9,ANXA8,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R"
TCGA.A6.6781	10	46977565	47597030	25	-1.4181	LARGE-LOSS	FOCAL	7	"AGAP9,ANXA8,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R"
TCGA.AF.6136	10	46995473	47109437	10	-3.0394	LARGE-LOSS	FOCAL	3	"CH17-360D5.1,GPRIN2,NPY4R"
TCGA.DY.A0XA	10	47006368	47109437	9	-4.0427	LARGE-LOSS	FOCAL	2	"CH17-360D5.1,NPY4R"
TCGA.AG.3887	10	47077738	47546129	14	-2.9488	LARGE-LOSS	FOCAL	6	"AGAP9,ANXA8,CH17-360D5.1,FAM25C,FAM25G,NPY4R"
TCGA.DM.A1D9	10	47085302	47099687	3	-3.7625	LARGE-LOSS	FOCAL	2	"CH17-360D5.1,NPY4R"
TCGA.A6.3808.01A	10	47087642	47948697	24	-2.4539	LARGE-LOSS	FOCAL	8	"AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM25C,FAM25G,NPY4R"
TCGA.AA.3692	10	47094304	47099528	3	-7.2208	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3881	10	47094304	47112546	7	-1.4513	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3812	10	47094304	47117348	9	-2.2035	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6534	10	47094304	47546129	12	-1.3884	LARGE-LOSS	FOCAL	4	"AGAP9,ANXA8,FAM25C,FAM25G"
TCGA.AA.3872	10	47099528	47109437	4	-3.1647	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5348	10	47099528	47109437	4	-5.4194	LARGE-LOSS	FOCAL	0	None
TCGA.CA.6716	10	47099528	47112546	5	-7.4417	LARGE-LOSS	FOCAL	0	None
TCGA.CA.6719	10	47099687	47109437	3	-5.6658	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6806	10	47099687	47109437	3	-4.1915	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6926	10	47099687	47112546	4	-4.0001	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3809	10	47099687	47117348	4	-6.6849	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4323	10	47099868	47112546	3	-6.6345	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3664	10	47109437	47113089	3	-4.504	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6676	10	47109437	47113089	3	-4.2933	LARGE-LOSS	FOCAL	0	None
TCGA.A6.A567	10	47586665	47652802	41	-5.0626	LARGE-LOSS	FOCAL	0	None
TCGA.WS.AB45	10	47593950	47597030	3	-4.4122	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A011.01A	10	47929768	47948697	5	-1.6015	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	10	49379000	49388814	6	-3.1892	LARGE-LOSS	FOCAL	1	FRMPD2
TCGA.AA.A010.01A	10	49628181	49687604	16	-1.4	LARGE-LOSS	FOCAL	2	"ARHGAP22,MAPK8"
TCGA.AA.A010.01A	10	50293983	50341801	6	-1.3896	LARGE-LOSS	FOCAL	2	"FAM170B,VSTM4"
TCGA.AA.A00N.01A	10	50598132	50599794	3	-1.8872	LARGE-LOSS	FOCAL	1	DRGX
TCGA.CK.5914.01A	10	50598132	50599794	3	-1.4327	LARGE-LOSS	FOCAL	1	DRGX
TCGA.AA.3509.01A	10	51362834	51374298	3	-3.7784	LARGE-LOSS	FOCAL	2	"PARG,TIMM23B"
TCGA.AA.A02F.01A	10	51555691	51562222	3	-4.9972	LARGE-LOSS	FOCAL	2	"MSMB,TIMM23B"
TCGA.A6.3808.01A	10	51620253	51970526	23	-2.6947	LARGE-LOSS	FOCAL	5	"AGAP6,ASAH2,FAM21A,TIMM23,TIMM23B"
TCGA.AA.3509.01A	10	51838370	51855337	8	-3.0209	LARGE-LOSS	FOCAL	1	FAM21A
TCGA.A6.3810.01A	10	51838370	51892549	20	-1.3273	LARGE-LOSS	FOCAL	1	FAM21A
TCGA.AA.A02F.01A	10	51863755	51978232	13	-2.405	LARGE-LOSS	FOCAL	2	"ASAH2,FAM21A"
TCGA.D5.6535	10	53116628	53404012	147	-2.0559	LARGE-LOSS	FOCAL	1	PRKG1
TCGA.AA.3989	10	53313425	53315442	3	-4.1628	LARGE-LOSS	FOCAL	1	PRKG1
TCGA.AG.A026	10	53458046	53461593	3	-4.009	LARGE-LOSS	FOCAL	2	"CSTF2T,PRKG1"
TCGA.DM.A28F	10	53627832	53652217	22	-1.5572	LARGE-LOSS	FOCAL	1	PRKG1
TCGA.D5.6932	10	53689773	53803864	72	-2.8034	LARGE-LOSS	FOCAL	1	PRKG1
TCGA.AA.3989	10	55664025	55680940	3	-5.6261	LARGE-LOSS	FOCAL	1	PCDH15
TCGA.AA.3845	10	55664025	55681001	4	-3.7892	LARGE-LOSS	FOCAL	1	PCDH15
TCGA.AA.3846	10	55664025	55681001	4	-5.6434	LARGE-LOSS	FOCAL	1	PCDH15
TCGA.AA.3952	10	55878045	55883143	3	-2.2363	LARGE-LOSS	FOCAL	1	PCDH15
TCGA.AA.3845	10	56383645	56392831	3	-4.1317	LARGE-LOSS	FOCAL	1	PCDH15
TCGA.AA.3867	10	57563407	57565102	3	-4.7445	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	10	57960309	57997347	24	-2.86085	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	10	57966329	57996883	20	-3.4546	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A6GC	10	58329208	58479427	31	-5.1877	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	10	58417560	58518555	34	-1.88775	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6625	10	61106386	61106884	3	-1.4831	LARGE-LOSS	FOCAL	1	FAM13C
TCGA.AA.3850	10	61924860	61932586	3	-1.91555	LARGE-LOSS	FOCAL	1	ANK3
TCGA.AA.3941	10	62298141	62300750	4	-1.8219	LARGE-LOSS	FOCAL	1	ANK3
TCGA.AA.3982	10	62298141	62300750	4	-1.7163	LARGE-LOSS	FOCAL	1	ANK3
TCGA.AA.3850	10	63998725	64014094	3	-2.84415	LARGE-LOSS	FOCAL	1	RTKN2
TCGA.AA.3850	10	64169447	64177187	5	-2.59465	LARGE-LOSS	FOCAL	1	ZNF365
TCGA.AA.3941	10	64460834	64460992	3	-4.8257	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	10	64460928	64461005	3	-4.5192	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	10	64564773	64893169	5	-1.3344	LARGE-LOSS	FOCAL	3	"ADO,EGR2,NRBF2"
TCGA.A6.5666	10	66067853	66081083	3	-1.9374	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4323	10	66719900	66727708	3	-4.1175	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	10	67454850	67460093	4	-6.73235	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	69969996	70056621	9	-1.7596	LARGE-LOSS	FOCAL	3	"ATOH7,MYPN,PBLD"
TCGA.AA.A010.01A	10	70145764	70178753	11	-1.6924	LARGE-LOSS	FOCAL	2	"DNA2,RUFY2"
TCGA.AA.3509.01A	10	70516996	70532723	5	-1.5976	LARGE-LOSS	FOCAL	1	CCAR1
TCGA.AG.3909.01A	10	70719540	70726727	5	-1.6582	LARGE-LOSS	FOCAL	1	DDX21
TCGA.AA.A00N.01A	10	70719540	70741214	13	-1.3523	LARGE-LOSS	FOCAL	1	DDX21
TCGA.AG.A01L.01A	10	70992472	70992751	2	-1.5084	LARGE-LOSS	FOCAL	1	HKDC1
TCGA.AG.A02G.01A	10	70992472	70992751	2	-6.5036	LARGE-LOSS	FOCAL	1	HKDC1
TCGA.F4.6461	10	71644959	71646221	3	-1.7319	LARGE-LOSS	FOCAL	1	COL13A1
TCGA.AA.A00O.01A	10	71873906	71874625	2	-6.7416	LARGE-LOSS	FOCAL	1	AIFM2
TCGA.AA.A00N.01A	10	71902393	71921338	9	-1.7167	LARGE-LOSS	FOCAL	2	"SAR1A,TYSND1"
TCGA.AA.A00N.01A	10	72576534	72645517	18	-1.4714	LARGE-LOSS	FOCAL	2	"PCBD1,SGPL1"
TCGA.AG.3909.01A	10	72576534	72645517	17	-1.5201	LARGE-LOSS	FOCAL	2	"PCBD1,SGPL1"
TCGA.AA.A010.01A	10	72628046	72645517	11	-1.8348	LARGE-LOSS	FOCAL	2	"PCBD1,SGPL1"
TCGA.AD.6889	10	73068705	73080634	3	-1.6157	LARGE-LOSS	FOCAL	1	SLC29A3
TCGA.AG.4015	10	73355055	73623276	115	-1.3766	LARGE-LOSS	FOCAL	4	"C10orf105,C10orf54,CDH23,PSAP"
TCGA.AA.A010.01A	10	75490293	75510824	4	-2.3594	LARGE-LOSS	FOCAL	1	SEC24C
TCGA.AG.A02G.01A	10	75562161	75565368	6	-4.0116	LARGE-LOSS	FOCAL	1	NDST2
TCGA.AA.A010.01A	10	75611943	75634091	5	-1.986	LARGE-LOSS	FOCAL	1	CAMK2G
TCGA.AA.A017.01A	10	76803508	76818066	2	-3.0276	LARGE-LOSS	FOCAL	1	DUPD1
TCGA.CM.5862	10	76932008	76956632	3	-6.205	LARGE-LOSS	FOCAL	1	SAMD8
TCGA.AA.A00N.01A	10	76971299	76990640	8	-2.2203	LARGE-LOSS	FOCAL	1	VDAC2
TCGA.CK.5914.01A	10	76971299	76990640	8	-1.3238	LARGE-LOSS	FOCAL	1	VDAC2
TCGA.AG.3909.01A	10	76971932	77158460	10	-1.4512	LARGE-LOSS	FOCAL	3	"COMTD1,VDAC2,ZNF503"
TCGA.A6.5661	10	79291867	79307109	5	-8.2765	LARGE-LOSS	FOCAL	1	KCNMA1
TCGA.AA.A01C.01A	10	79741914	79743933	4	-2.1429	LARGE-LOSS	FOCAL	1	POLR3A
TCGA.CA.5254	10	80018019	81032554	526	-1.4473	LARGE-LOSS	FOCAL	1	ZMIZ1
TCGA.CK.4952.01A	10	81044706	81133561	2	-4.653	LARGE-LOSS	FOCAL	2	"PPIF,ZMIZ1"
TCGA.D5.6539	10	82881974	82888268	4	-1.5155	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	10	84801965	84803820	3	-1.8062	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	10	87066107	87075220	9	-1.5962	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	88445355	88492587	12	-1.4361	LARGE-LOSS	FOCAL	1	LDB3
TCGA.A6.3808.01A	10	88459017	89124796	58	-1.6624	LARGE-LOSS	FOCAL	10	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,LDB3,MMRN2,NUTM2A,SNCG"
TCGA.AA.A010.01A	10	88671950	88704918	8	-1.4329	LARGE-LOSS	FOCAL	2	"BMPR1A,MMRN2"
TCGA.AZ.4681	10	88947060	89103047	3	-4.1678	LARGE-LOSS	FOCAL	2	"FAM35A,NUTM2A"
TCGA.CK.4952.01A	10	89110190	89114776	2	-4.7636	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	10	89120210	89124796	2	-3.2425	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D0	10	89262986	90295429	340	-4.0004	LARGE-LOSS	FOCAL	6	"ATAD1,KLLN,MINPP1,PAPSS2,PTEN,RNLS"
TCGA.AY.A54L.01A	10	89487000	89724997	25	-1.3239	LARGE-LOSS	FOCAL	4	"ATAD1,KLLN,PAPSS2,PTEN"
TCGA.DM.A1D9	10	89492752	89876254	120	-3.1514	LARGE-LOSS	FOCAL	4	"ATAD1,KLLN,PAPSS2,PTEN"
TCGA.G4.6322	10	89501927	89774577	55	-3.8623	LARGE-LOSS	FOCAL	4	"ATAD1,KLLN,PAPSS2,PTEN"
TCGA.A6.2681	10	89565699	89686508	23	-1.5824	LARGE-LOSS	FOCAL	3	"ATAD1,KLLN,PTEN"
TCGA.AA.3556	10	89657149	90213419	191	-2.9612	LARGE-LOSS	FOCAL	2	"PTEN,RNLS"
TCGA.AA.3864	10	90186122	90193429	5	-1.9323	LARGE-LOSS	FOCAL	1	RNLS
TCGA.AA.3982	10	90186122	90193429	5	-2.2573	LARGE-LOSS	FOCAL	1	RNLS
TCGA.AA.3811	10	90349909	90352648	4	-3.8922	LARGE-LOSS	FOCAL	1	LIPJ
TCGA.AA.3977	10	90351347	90352648	3	-1.4068	LARGE-LOSS	FOCAL	1	LIPJ
TCGA.AA.3982	10	90351347	90352648	3	-4.8881	LARGE-LOSS	FOCAL	1	LIPJ
TCGA.AA.3941	10	90351347	90356597	5	-3.0283	LARGE-LOSS	FOCAL	1	LIPJ
TCGA.AA.3941	10	90517128	90534758	16	-1.4044	LARGE-LOSS	FOCAL	1	LIPN
TCGA.NH.A6GC	10	90600426	90608588	6	-5.1285	LARGE-LOSS	FOCAL	1	ANKRD22
TCGA.AG.3909.01A	10	90750557	90773869	8	-1.4487	LARGE-LOSS	FOCAL	2	"ACTA2,FAS"
TCGA.AA.3941	10	90818154	90835265	10	-1.382	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	10	91637063	91644026	4	-1.8058	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	10	91956804	92048791	35	-2.0208	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	10	92047084	92048791	3	-5.0382	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	92047084	92048791	3	-4.722	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	10	92047084	92048791	3	-4.2623	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	10	92155656	92160833	4	-1.822	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	10	93767833	93784501	8	-2.8083	LARGE-LOSS	FOCAL	1	BTAF1
TCGA.AG.A023.01A	10	95278592	95279398	2	-3.207	LARGE-LOSS	FOCAL	1	CEP55
TCGA.AA.3850	10	95782924	95801535	10	-1.40245	LARGE-LOSS	FOCAL	1	PLCE1
TCGA.AG.A01N.01A	10	96097482	96099978	4	-3.9216	LARGE-LOSS	FOCAL	1	NOC3L
TCGA.AA.3864	10	98284804	98286341	3	-1.4894	LARGE-LOSS	FOCAL	1	TM9SF3
TCGA.AA.3982	10	98284804	98289001	4	-1.43	LARGE-LOSS	FOCAL	1	TM9SF3
TCGA.AA.A00N.01A	10	99190087	99215307	18	-1.5039	LARGE-LOSS	FOCAL	3	"EXOSC1,PGAM1,ZDHHC16"
TCGA.AG.A023.01A	10	99211383	99219771	12	-2.1831	LARGE-LOSS	FOCAL	2	"MMS19,ZDHHC16"
TCGA.AA.A01K.01A	10	99218436	99219771	4	-5.8532	LARGE-LOSS	FOCAL	1	MMS19
TCGA.AA.A02H.01A	10	99228676	99230475	4	-3.8423	LARGE-LOSS	FOCAL	1	MMS19
TCGA.AA.A01C.01A	10	99229350	99230475	3	-2.5167	LARGE-LOSS	FOCAL	1	MMS19
TCGA.AA.A02H.01A	10	99343282	99349624	3	-2.0663	LARGE-LOSS	FOCAL	3	"ANKRD2,C10orf62,HOGA1"
TCGA.AG.3909.01A	10	100194979	100221473	5	-1.3273	LARGE-LOSS	FOCAL	2	"HPS1,HPSE2"
TCGA.AA.3982	10	100470787	100474569	3	-4.1835	LARGE-LOSS	FOCAL	1	HPSE2
TCGA.A6.6782	10	100642847	100657704	3	-1.5967	LARGE-LOSS	FOCAL	1	HPSE2
TCGA.AA.3972	10	100796110	100797579	3	-1.8257	LARGE-LOSS	FOCAL	1	HPSE2
TCGA.AA.A010.01A	10	101292857	101373426	5	-1.8178	LARGE-LOSS	FOCAL	2	"NKX2-3,SLC25A28"
TCGA.AA.A010.01A	10	101567101	101577018	6	-1.4397	LARGE-LOSS	FOCAL	1	ABCC2
TCGA.AA.A010.01A	10	101578516	101611242	13	-2.4701	LARGE-LOSS	FOCAL	1	ABCC2
TCGA.A6.3808.01A	10	101590423	101604032	7	-2.3251	LARGE-LOSS	FOCAL	1	ABCC2
TCGA.AA.A00N.01A	10	101923718	102040673	45	-1.3475	LARGE-LOSS	FOCAL	4	"BLOC1S2,CHUK,CWF19L1,ERLIN1"
TCGA.AG.A01N.01A	10	101989145	102040673	18	-1.3709	LARGE-LOSS	FOCAL	3	"BLOC1S2,CHUK,CWF19L1"
TCGA.AF.3914.01A	10	102035183	102040673	3	-1.4976	LARGE-LOSS	FOCAL	1	BLOC1S2
TCGA.AH.6897	10	102395439	102400640	3	-4.1402	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3972	10	102535574	102536435	3	-1.4971	LARGE-LOSS	FOCAL	1	PAX2
TCGA.AG.4021	10	102535574	102536435	3	-7.1625	LARGE-LOSS	FOCAL	1	PAX2
TCGA.AA.A010.01A	10	102733244	102746808	14	-1.4278	LARGE-LOSS	FOCAL	2	"MRPL43,SEMA4G"
TCGA.AA.A02F.01A	10	102739615	102741163	4	-5.3579	LARGE-LOSS	FOCAL	2	"MRPL43,SEMA4G"
TCGA.AA.A010.01A	10	102747916	102763244	7	-2.2904	LARGE-LOSS	FOCAL	2	"C10orf2,LZTS2"
TCGA.AG.3909.01A	10	102781505	102799205	15	-1.4747	LARGE-LOSS	FOCAL	2	"PDZD7,SFXN3"
TCGA.AA.A00N.01A	10	103546171	103588341	21	-1.6459	LARGE-LOSS	FOCAL	2	"KCNIP2,MGEA5"
TCGA.AG.A01W.01A	10	103559905	103567530	4	-1.688	LARGE-LOSS	FOCAL	1	MGEA5
TCGA.AG.3909.01A	10	103587047	103588785	6	-2.112	LARGE-LOSS	FOCAL	1	KCNIP2
TCGA.CK.5914.01A	10	103773667	103799723	6	-1.3526	LARGE-LOSS	FOCAL	1	C10orf76
TCGA.AA.A010.01A	10	103867873	103903938	13	-1.5405	LARGE-LOSS	FOCAL	2	"LDB1,PPRC1"
TCGA.AG.3909.01A	10	103986257	103988552	4	-1.6745	LARGE-LOSS	FOCAL	1	ELOVL3
TCGA.AA.A02H.01A	10	104120742	104121490	2	-3.2141	LARGE-LOSS	FOCAL	1	GBF1
TCGA.AA.A02H.01A	10	104139024	104139571	2	-5.2582	LARGE-LOSS	FOCAL	1	GBF1
TCGA.AF.3914.01A	10	104155627	104171886	20	-1.3304	LARGE-LOSS	FOCAL	2	"NFKB2,PSD"
TCGA.AA.A010.01A	10	104155627	104196225	32	-2.0065	LARGE-LOSS	FOCAL	4	"CUEDC2,FBXL15,NFKB2,PSD"
TCGA.AG.A01W.01A	10	104581209	104586792	7	-1.4329	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	10	105104731	105108435	3	-1.5093	LARGE-LOSS	FOCAL	1	PCGF6
TCGA.AA.A00N.01A	10	105664781	105727456	4	-1.4447	LARGE-LOSS	FOCAL	2	"OBFC1,SLK"
TCGA.AA.A017.01A	10	105809108	105811175	5	-2.3184	LARGE-LOSS	FOCAL	1	COL17A1
TCGA.AA.A01K.01A	10	105882716	105885229	3	-4.249	LARGE-LOSS	FOCAL	1	SFR1
TCGA.AA.3845	10	107699225	107699629	3	-2.0445	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	10	107699225	107699629	3	-2.2335	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	10	108214552	108215191	3	-7.1851	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	10	109035406	109045838	6	-1.4017	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4616	10	110157331	110158205	3	-4.6223	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3956	10	110680676	110707759	8	-2.9931	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3842	10	110706950	110707759	3	-4.8557	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	10	110706950	110707759	3	-7.7419	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	10	110706950	110707759	3	-7.4803	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	10	110706950	110707759	3	-4.7419	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	10	110706950	110707824	3	-2.8781	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	111967520	112004569	4	-2.5534	LARGE-LOSS	FOCAL	1	MXI1
TCGA.AA.3850	10	112001008	112003799	3	-2.41755	LARGE-LOSS	FOCAL	1	MXI1
TCGA.AA.A010.01A	10	112262472	112269800	3	-2.6458	LARGE-LOSS	FOCAL	1	DUSP5
TCGA.AA.3861.01A	10	112333394	112338329	5	-2.2632	LARGE-LOSS	FOCAL	1	SMC3
TCGA.A6.3808.01A	10	112340620	112349662	8	-2.9084	LARGE-LOSS	FOCAL	1	SMC3
TCGA.AA.A00N.01A	10	112635720	112657759	12	-1.3747	LARGE-LOSS	FOCAL	1	PDCD4
TCGA.AA.3850	10	113102919	113114870	7	-2.12475	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	10	113507256	113514494	3	-1.3428	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	10	113507256	113514494	3	-3.0911	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	114710498	114724253	4	-2.4365	LARGE-LOSS	FOCAL	1	TCF7L2
TCGA.AA.3837	10	115216864	115232067	3	-4.3221	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3852	10	115216864	115232067	3	-3.8996	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A017.01A	10	115341623	115342926	2	-3.0448	LARGE-LOSS	FOCAL	1	HABP2
TCGA.AA.3844	10	115893433	115894958	3	-1.4352	LARGE-LOSS	FOCAL	1	CCDC186
TCGA.A6.3808.01A	10	116013360	116014632	2	-4.907	LARGE-LOSS	FOCAL	1	VWA2
TCGA.AA.A010.01A	10	116581763	116608355	12	-1.721	LARGE-LOSS	FOCAL	1	FAM160B1
TCGA.AA.3867	10	117223656	117244090	7	-1.6894	LARGE-LOSS	FOCAL	1	ATRNL1
TCGA.AA.3982	10	117506054	117511923	8	-2.3348	LARGE-LOSS	FOCAL	1	ATRNL1
TCGA.AA.3530	10	117507845	117511923	3	-4.78	LARGE-LOSS	FOCAL	1	ATRNL1
TCGA.A6.3808.01A	10	118609026	118645815	11	-1.6139	LARGE-LOSS	FOCAL	2	"ENO4,KIAA1598"
TCGA.AA.A010.01A	10	118891675	118897300	4	-2.5232	LARGE-LOSS	FOCAL	1	VAX1
TCGA.AA.3850	10	119756822	119791027	8	-1.79885	LARGE-LOSS	FOCAL	1	RAB11FIP2
TCGA.AA.3530	10	119767503	119790481	3	-2.6861	LARGE-LOSS	FOCAL	1	RAB11FIP2
TCGA.AA.3811	10	119767503	119790481	3	-6.4336	LARGE-LOSS	FOCAL	1	RAB11FIP2
TCGA.AA.3844	10	119767503	119790481	3	-4.4496	LARGE-LOSS	FOCAL	1	RAB11FIP2
TCGA.AA.3982	10	119767503	119790481	3	-2.705	LARGE-LOSS	FOCAL	1	RAB11FIP2
TCGA.AA.A00N.01A	10	120789304	120795502	4	-1.8287	LARGE-LOSS	FOCAL	2	"EIF3A,NANOS1"
TCGA.AA.A010.01A	10	120789304	120797733	6	-3.0216	LARGE-LOSS	FOCAL	2	"EIF3A,NANOS1"
TCGA.AA.A010.01A	10	120801478	120820246	10	-1.5747	LARGE-LOSS	FOCAL	1	EIF3A
TCGA.AA.A010.01A	10	120863586	120936485	26	-1.4817	LARGE-LOSS	FOCAL	3	"FAM45A,PRDX3,SFXN4"
TCGA.AA.A00N.01A	10	120920368	120936485	10	-2.0102	LARGE-LOSS	FOCAL	2	"PRDX3,SFXN4"
TCGA.CK.5914.01A	10	120920368	120936485	10	-1.3372	LARGE-LOSS	FOCAL	2	"PRDX3,SFXN4"
TCGA.AA.A017.01A	10	120931843	120933921	3	-4.3767	LARGE-LOSS	FOCAL	1	PRDX3
TCGA.AA.A00N.01A	10	121551027	121586692	18	-2.1057	LARGE-LOSS	FOCAL	1	INPP5F
TCGA.AG.3909.01A	10	121551027	121586692	18	-1.5285	LARGE-LOSS	FOCAL	1	INPP5F
TCGA.AG.A01L.01A	10	121564894	121565835	2	-1.472	LARGE-LOSS	FOCAL	1	INPP5F
TCGA.AA.3844	10	122293263	122294417	3	-4.1479	LARGE-LOSS	FOCAL	1	PPAPDC1A
TCGA.AA.3982	10	122293263	122294417	3	-4.042	LARGE-LOSS	FOCAL	1	PPAPDC1A
TCGA.AA.3982	10	122419868	122421397	6	-1.6023	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3692	10	122880693	122886895	3	-7.7981	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3887	10	122880693	122886895	3	-7.3176	LARGE-LOSS	FOCAL	0	None
TCGA.AG.4021	10	122880693	122886895	3	-1.9352	LARGE-LOSS	FOCAL	0	None
TCGA.CL.4957	10	122880693	122886895	3	-1.8526	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	10	123670383	123733471	14	-1.3594	LARGE-LOSS	FOCAL	2	"ATE1,NSMCE4A"
TCGA.AA.A010.01A	10	123718797	123733471	8	-1.4209	LARGE-LOSS	FOCAL	1	NSMCE4A
TCGA.AG.A01L.01A	10	124094349	124097465	3	-1.7475	LARGE-LOSS	FOCAL	1	BTBD16
TCGA.AA.A02K.01A	10	124344720	124352999	8	-1.369	LARGE-LOSS	FOCAL	1	DMBT1
TCGA.AA.A00N.01A	10	124742291	124757968	10	-1.7522	LARGE-LOSS	FOCAL	2	"IKZF5,PSTK"
TCGA.AA.A00N.01A	10	124915112	125434283	9	-1.8166	LARGE-LOSS	FOCAL	2	"BUB3,GPR26"
TCGA.AA.A010.01A	10	124915112	125434283	9	-1.8338	LARGE-LOSS	FOCAL	2	"BUB3,GPR26"
TCGA.AA.3530	10	125564899	125567935	3	-1.8281	LARGE-LOSS	FOCAL	1	CPXM2
TCGA.AA.3982	10	125585033	125585304	3	-1.6193	LARGE-LOSS	FOCAL	1	CPXM2
TCGA.AA.A010.01A	10	126448976	126463203	4	-2.5158	LARGE-LOSS	FOCAL	1	METTL10
TCGA.AA.A010.01A	10	127436058	127460737	9	-1.4812	LARGE-LOSS	FOCAL	2	"EDRF1,MMP21"
TCGA.AA.A00N.01A	10	127455210	127460737	4	-1.8187	LARGE-LOSS	FOCAL	1	MMP21
TCGA.AA.A00N.01A	10	127495939	127522291	10	-1.6211	LARGE-LOSS	FOCAL	2	"BCCIP,UROS"
TCGA.AA.A00N.01A	10	128788682	128806933	6	-1.4342	LARGE-LOSS	FOCAL	1	DOCK1
TCGA.EI.7004	10	129663157	129674377	3	-1.8239	LARGE-LOSS	FOCAL	0	None
TCGA.G5.6572	10	131485344	131525048	27	-3.265	LARGE-LOSS	FOCAL	1	MGMT
TCGA.AF.2692	10	131504195	131509503	4	-3.7135	LARGE-LOSS	FOCAL	1	MGMT
TCGA.AA.A01Q.01A	10	131675983	131761140	5	-1.4043	LARGE-LOSS	FOCAL	1	EBF3
TCGA.AA.A010.01A	10	131755455	131761602	5	-2.6818	LARGE-LOSS	FOCAL	1	EBF3
TCGA.AD.6890	10	132903492	132904377	3	-3.8134	LARGE-LOSS	FOCAL	1	TCERG1L
TCGA.A6.2671	10	133472534	133473697	3	-8.6494	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	10	134742928	134754432	6	-1.7989	LARGE-LOSS	FOCAL	1	CFAP46
TCGA.AA.A02E.01A	10	135098542	135098922	2	-5.3117	LARGE-LOSS	FOCAL	1	TUBGCP2
TCGA.AA.A02E.01A	10	135101585	135116247	10	-1.7933	LARGE-LOSS	FOCAL	1	TUBGCP2
TCGA.AA.A010.01A	10	135176306	135233481	25	-1.9669	LARGE-LOSS	FOCAL	3	"ECHS1,MTG1,PAOX"
TCGA.AA.A00N.01A	11	238941	251490	8	-1.8582	LARGE-LOSS	FOCAL	1	PSMD13
TCGA.CK.5914.01A	11	238941	251490	8	-1.5148	LARGE-LOSS	FOCAL	1	PSMD13
TCGA.AG.4009.01A	11	290410	320516	13	-1.3339	LARGE-LOSS	FOCAL	5	"ATHL1,IFITM1,IFITM2,IFITM3,IFITM5"
TCGA.A6.3808.01A	11	293604	433294	47	-2.0816	LARGE-LOSS	FOCAL	9	"ANO9,ATHL1,B4GALNT4,IFITM1,IFITM2,IFITM3,IFITM5,PKP3,SIGIRR"
TCGA.AA.A00N.01A	11	460138	486922	4	-1.7897	LARGE-LOSS	FOCAL	1	PTDSS2
TCGA.AA.A017.01A	11	497939	498426	2	-5.1682	LARGE-LOSS	FOCAL	1	RNH1
TCGA.AA.A010.01A	11	532585	591328	29	-1.9359	LARGE-LOSS	FOCAL	5	"HRAS,LMNTD2,LRRC56,PHRF1,RASSF7"
TCGA.AA.A02E.01A	11	610459	610923	2	-6.0554	LARGE-LOSS	FOCAL	1	PHRF1
TCGA.AA.A010.01A	11	680911	700565	11	-2.1132	LARGE-LOSS	FOCAL	2	"DEAF1,TMEM80"
TCGA.AA.A010.01A	11	788130	812498	17	-1.8278	LARGE-LOSS	FOCAL	5	"CEND1,PANO1,PIDD1,RPLP2,SLC25A22"
TCGA.AA.A010.01A	11	831188	850230	10	-2.1384	LARGE-LOSS	FOCAL	4	"CD151,CRACR2B,POLR2L,TSPAN4"
TCGA.AA.A010.01A	11	899269	904659	6	-2.1566	LARGE-LOSS	FOCAL	1	CHID1
TCGA.AA.A00N.01A	11	1003663	1010490	6	-1.8225	LARGE-LOSS	FOCAL	1	AP2A2
TCGA.A6.3808.01A	11	1074848	1090765	20	-2.7029	LARGE-LOSS	FOCAL	1	MUC2
TCGA.A6.3808.01A	11	1091394	1092608	3	-5.7569	LARGE-LOSS	FOCAL	1	MUC2
TCGA.A6.3808.01A	11	1093155	1103152	16	-2.7001	LARGE-LOSS	FOCAL	1	MUC2
TCGA.A6.3808.01A	11	1262040	1272429	5	-4.8727	LARGE-LOSS	FOCAL	1	MUC5B
TCGA.A6.3808.01A	11	1273565	1283395	16	-2.4298	LARGE-LOSS	FOCAL	1	MUC5B
TCGA.AA.A010.01A	11	1288554	1605604	34	-2.0684	LARGE-LOSS	FOCAL	5	"BRSK2,DUSP8,KRTAP5-1,MOB2,TOLLIP"
TCGA.AA.A010.01A	11	1768880	1891338	22	-1.5448	LARGE-LOSS	FOCAL	5	"CTSD,IFITM10,LSP1,SYT8,TNNI2"
TCGA.AA.A010.01A	11	1968505	2170305	19	-1.8917	LARGE-LOSS	FOCAL	4	"HOTS,IGF2,INS-IGF2,MRPL23"
TCGA.AA.3850	11	2087219	2087910	3	-1.70405	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	2398716	2411600	4	-2.278	LARGE-LOSS	FOCAL	1	CD81
TCGA.DC.6160.01A	11	2895747	2899859	4	-1.5955	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	2993285	3033369	10	-1.5865	LARGE-LOSS	FOCAL	2	"CARS,NAP1L4"
TCGA.AG.A02X.01A	11	3038309	3040317	4	-3.9517	LARGE-LOSS	FOCAL	1	CARS
TCGA.A6.2672	11	3449681	3513784	6	-7.8308	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	4150246	4388544	6	-1.5963	LARGE-LOSS	FOCAL	2	"OR52B4,RRM1"
TCGA.CI.6624	11	4470938	4472185	3	-1.5421	LARGE-LOSS	FOCAL	1	OR52K2
TCGA.AA.A00N.01A	11	5141866	5173144	4	-1.4306	LARGE-LOSS	FOCAL	2	"OR52A1,OR52A5"
TCGA.AA.3982	11	5462373	5463920	4	-2.5526	LARGE-LOSS	FOCAL	2	"OR51B5,OR51I1"
TCGA.AA.3850	11	5866729	5867481	4	-1.96355	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	5866729	5920925	25	-1.8114	LARGE-LOSS	FOCAL	2	"OR52E4,OR52E8"
TCGA.AA.A010.01A	11	6452479	6461651	8	-1.6674	LARGE-LOSS	FOCAL	1	HPX
TCGA.AA.A010.01A	11	6621364	6661851	37	-2.6113	LARGE-LOSS	FOCAL	5	"DCHS1,ILK,RRP8,TAF10,TPP1"
TCGA.AA.A00N.01A	11	6629581	6632097	5	-2.0225	LARGE-LOSS	FOCAL	2	"ILK,TAF10"
TCGA.CK.5914.01A	11	6629581	6637169	10	-1.3684	LARGE-LOSS	FOCAL	3	"ILK,TAF10,TPP1"
TCGA.AA.A010.01A	11	7083527	7111683	5	-1.8944	LARGE-LOSS	FOCAL	2	"NLRP14,RBMXL2"
TCGA.AA.A029.01A	11	7688901	7713102	8	-3.1541	LARGE-LOSS	FOCAL	2	"CYB5R2,OVCH2"
TCGA.AA.3982	11	7784714	7799479	4	-1.6036	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	8111086	8132238	12	-1.438	LARGE-LOSS	FOCAL	2	"RIC3,TUB"
TCGA.AA.A00N.01A	11	8933952	8942816	5	-1.5533	LARGE-LOSS	FOCAL	2	"AKIP1,C11orf16"
TCGA.AG.3909.01A	11	8983583	9009637	6	-1.3433	LARGE-LOSS	FOCAL	2	"NRIP3,TMEM9B"
TCGA.A6.3808.01A	11	9286457	9463611	28	-1.3491	LARGE-LOSS	FOCAL	3	"DENND5A,IPO7,TMEM41B"
TCGA.AA.A00N.01A	11	9597434	9609958	7	-1.615	LARGE-LOSS	FOCAL	1	WEE1
TCGA.AA.A010.01A	11	9597434	9609958	7	-2.2265	LARGE-LOSS	FOCAL	1	WEE1
TCGA.AA.3850	11	9867665	9869223	3	-2.08265	LARGE-LOSS	FOCAL	1	SBF2
TCGA.EI.6509	11	10619418	10622277	3	-6.8736	LARGE-LOSS	FOCAL	1	MRVI1
TCGA.AA.A00N.01A	11	10819294	10828721	12	-1.875	LARGE-LOSS	FOCAL	1	EIF4G2
TCGA.AA.A00N.01A	11	11941649	11955326	7	-1.4003	LARGE-LOSS	FOCAL	1	USP47
TCGA.CM.4752	11	12062987	12070664	3	-4.1069	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3697	11	12231111	12234438	3	-6.5442	LARGE-LOSS	FOCAL	1	MICAL2
TCGA.AA.3844	11	13933964	13938221	4	-2.5278	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	11	13933964	13938221	4	-4.2055	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	15829850	15832813	5	-4.8896	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	15832616	15839140	3	-4.35515	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	16012241	16480336	94	-2.2642	LARGE-LOSS	FOCAL	1	SOX6
TCGA.AA.3850	11	16026173	16291132	49	-2.31045	LARGE-LOSS	FOCAL	1	SOX6
TCGA.AA.3977	11	16474761	16480336	3	-2.2822	LARGE-LOSS	FOCAL	1	SOX6
TCGA.AA.A010.01A	11	17408426	17426979	14	-2.0632	LARGE-LOSS	FOCAL	2	"ABCC8,KCNJ11"
TCGA.AA.A00N.01A	11	18022018	18062142	14	-1.4089	LARGE-LOSS	FOCAL	2	"SERGEF,TPH1"
TCGA.AM.5820	11	18126290	18135641	3	-1.6844	LARGE-LOSS	FOCAL	1	SAAL1
TCGA.AA.3941	11	18160764	18192835	21	-1.6489	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	18169981	18173317	8	-1.54385	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3598	11	18173306	18173806	3	-6.6878	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	18288383	18314385	12	-1.4743	LARGE-LOSS	FOCAL	2	"HPS5,SAA1"
TCGA.AG.3909.01A	11	18418358	18436694	9	-1.4926	LARGE-LOSS	FOCAL	2	"LDHA,LDHC"
TCGA.AA.A02E.01A	11	18496966	18499135	3	-3.4268	LARGE-LOSS	FOCAL	1	LDHAL6A
TCGA.AA.3685	11	18954807	18960023	4	-5.4933	LARGE-LOSS	FOCAL	1	MRGPRX1
TCGA.EI.6509	11	18956689	18960114	4	-6.9544	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	19183923	19186293	3	-4.94905	LARGE-LOSS	FOCAL	1	ZDHHC13
TCGA.AA.3941	11	19184297	19187015	3	-7.0478	LARGE-LOSS	FOCAL	1	ZDHHC13
TCGA.AA.A00N.01A	11	19251734	19890416	13	-1.3901	LARGE-LOSS	FOCAL	2	"E2F8,NAV2"
TCGA.AG.3909.01A	11	19253733	19261564	6	-1.329	LARGE-LOSS	FOCAL	1	E2F8
TCGA.AG.A01J.01A	11	19258834	19259359	2	-5.5027	LARGE-LOSS	FOCAL	1	E2F8
TCGA.F5.6813	11	20284257	20285598	3	-6.2081	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	20385751	20429445	14	-1.5912	LARGE-LOSS	FOCAL	2	"HTATIP2,PRMT3"
TCGA.AA.A010.01A	11	20673784	20699441	4	-2.1735	LARGE-LOSS	FOCAL	2	"NELL1,SLC6A5"
TCGA.CL.4957	11	22089615	22211486	26	-1.5196	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3831	11	22471916	22472757	3	-1.343	LARGE-LOSS	FOCAL	0	None
TCGA.EF.5830	11	22471916	22472757	3	-5.7871	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AAT5	11	24247559	24247858	3	-1.5437	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2686	11	24442105	24448247	3	-4.5557	LARGE-LOSS	FOCAL	0	None
TCGA.CA.6715	11	24794259	24794581	3	-1.8881	LARGE-LOSS	FOCAL	1	LUZP2
TCGA.F4.6459	11	25084214	25085295	3	-1.8617	LARGE-LOSS	FOCAL	1	LUZP2
TCGA.AG.A01Y	11	25187864	25221011	12	-2.5571	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	27389406	27398656	7	-1.7091	LARGE-LOSS	FOCAL	1	LGR4
TCGA.DC.6154	11	28965159	28972435	3	-1.707	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	28972435	29907726	284	-2.0055	LARGE-LOSS	FOCAL	0	None
TCGA.AM.5820	11	30422411	30425929	3	-4.7984	LARGE-LOSS	FOCAL	1	MPPED2
TCGA.AA.3861.01A	11	32624305	32739587	16	-1.7427	LARGE-LOSS	FOCAL	2	"CCDC73,EIF3M"
TCGA.AA.3862.01A	11	32624305	32739587	16	-1.7519	LARGE-LOSS	FOCAL	2	"CCDC73,EIF3M"
TCGA.AG.3909.01A	11	33038032	33065278	9	-1.3228	LARGE-LOSS	FOCAL	2	"DEPDC7,TCP11L1"
TCGA.CK.5914.01A	11	33038032	33076091	10	-1.3644	LARGE-LOSS	FOCAL	2	"DEPDC7,TCP11L1"
TCGA.AA.A00N.01A	11	33038032	33080454	13	-1.7261	LARGE-LOSS	FOCAL	2	"DEPDC7,TCP11L1"
TCGA.AA.A010.01A	11	33368791	33374634	7	-1.7769	LARGE-LOSS	FOCAL	1	HIPK3
TCGA.AA.A00N.01A	11	33731644	33880851	15	-1.3568	LARGE-LOSS	FOCAL	3	"CD59,FBXO3,LMO2"
TCGA.AA.3850	11	34703904	34705183	3	-4.28825	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	36600515	36618674	8	-1.65465	LARGE-LOSS	FOCAL	3	"C11orf74,RAG1,RAG2"
TCGA.AA.3850	11	36632777	36645206	14	-1.47985	LARGE-LOSS	FOCAL	1	C11orf74
TCGA.AA.3982	11	36920744	36933482	3	-6.8055	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	37122405	37143424	18	-2.34695	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	37342282	37348949	3	-9.88765	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	37342282	37350063	4	-8.5304	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	41052019	41053527	3	-7.68025	LARGE-LOSS	FOCAL	1	LRRC4C
TCGA.AA.3850	11	43175676	43186146	3	-6.92985	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	11	43856320	43860931	3	-1.3299	LARGE-LOSS	FOCAL	1	HSD17B12
TCGA.DC.6154	11	44844780	44847669	3	-1.7672	LARGE-LOSS	FOCAL	1	TSPAN18
TCGA.AA.A010.01A	11	45203312	45204373	3	-1.9542	LARGE-LOSS	FOCAL	1	PRDM11
TCGA.AG.4009.01A	11	45203312	45204373	3	-1.3352	LARGE-LOSS	FOCAL	1	PRDM11
TCGA.AA.A010.01A	11	45880264	45937725	30	-1.6469	LARGE-LOSS	FOCAL	4	"C11orf94,CRY2,MAPK8IP1,PEX16"
TCGA.AF.3914.01A	11	45919588	45927150	9	-1.6036	LARGE-LOSS	FOCAL	1	MAPK8IP1
TCGA.AG.4009.01A	11	45919588	45937725	18	-1.3431	LARGE-LOSS	FOCAL	3	"C11orf94,MAPK8IP1,PEX16"
TCGA.AA.A010.01A	11	46367005	46439426	28	-1.7681	LARGE-LOSS	FOCAL	4	"AMBRA1,CHRM4,DGKZ,MDK"
TCGA.A6.3808.01A	11	46388789	46406668	22	-1.7433	LARGE-LOSS	FOCAL	3	"CHRM4,DGKZ,MDK"
TCGA.AA.A02E.01A	11	46670649	46679022	5	-2.841	LARGE-LOSS	FOCAL	1	ATG13
TCGA.AG.A00H.01A	11	46724188	46724483	2	-5.9098	LARGE-LOSS	FOCAL	1	ZNF408
TCGA.AA.A010.01A	11	46880483	46889480	5	-1.5452	LARGE-LOSS	FOCAL	1	LRP4
TCGA.AA.A010.01A	11	46921762	46958283	3	-1.4022	LARGE-LOSS	FOCAL	2	"C11orf49,LRP4"
TCGA.AA.A029.01A	11	47236639	47254316	4	-4.3655	LARGE-LOSS	FOCAL	1	DDB2
TCGA.AG.A00H.01A	11	47303890	47304345	2	-6.1159	LARGE-LOSS	FOCAL	1	MADD
TCGA.AA.A02H.01A	11	47305697	47306455	2	-4.6705	LARGE-LOSS	FOCAL	1	MADD
TCGA.AA.A02H.01A	11	47330094	47330805	3	-1.7242	LARGE-LOSS	FOCAL	1	MADD
TCGA.AA.A010.01A	11	47431619	47447372	14	-1.9804	LARGE-LOSS	FOCAL	2	"PSMC3,SLC39A13"
TCGA.AA.A010.01A	11	47591205	47650455	16	-2.0638	LARGE-LOSS	FOCAL	6	"C1QTNF4,FAM180B,KBTBD4,MTCH2,NDUFS3,PTPMT1"
TCGA.A6.3808.01A	11	47644219	47660224	10	-1.8859	LARGE-LOSS	FOCAL	1	MTCH2
TCGA.AA.3941	11	48269263	50472901	247	-1.4658	LARGE-LOSS	FOCAL	10	"FOLH1,OR4A47,OR4C12,OR4C13,OR4C3,OR4C45,OR4S1,OR4X1,TRIM49B,TRIM64C"
TCGA.AA.3941	11	50474277	51238711	21	-5.8674	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	11	54828061	54835622	3	-4.4961	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	11	54828061	54840329	6	-5.4895	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	11	55029664	55035811	4	-3.1054	LARGE-LOSS	FOCAL	1	TRIM48
TCGA.A6.3808.01A	11	55652993	55656365	4	-2.9067	LARGE-LOSS	FOCAL	1	TRIM51
TCGA.AA.A00N.01A	11	55652993	55657367	5	-1.6006	LARGE-LOSS	FOCAL	1	TRIM51
TCGA.AA.A02H.01A	11	57093859	57100857	11	-1.4021	LARGE-LOSS	FOCAL	1	SSRP1
TCGA.AA.A00N.01A	11	57093859	57105988	14	-1.7208	LARGE-LOSS	FOCAL	2	"P2RX3,SSRP1"
TCGA.AA.A010.01A	11	57970629	57982935	3	-1.8293	LARGE-LOSS	FOCAL	2	"OR1S1,OR1S2"
TCGA.AA.A00N.01A	11	58877083	58919756	6	-1.556	LARGE-LOSS	FOCAL	2	"FAM111A,FAM111B"
TCGA.AA.3941	11	59147074	59190119	10	-2.9892	LARGE-LOSS	FOCAL	1	OR5A2
TCGA.AA.A00N.01A	11	59344052	59434285	30	-1.6351	LARGE-LOSS	FOCAL	2	"OSBP,PATL1"
TCGA.AA.A010.01A	11	59361035	59377802	8	-2.1911	LARGE-LOSS	FOCAL	1	OSBP
TCGA.AA.A010.01A	11	59382787	59434285	18	-1.364	LARGE-LOSS	FOCAL	2	"OSBP,PATL1"
TCGA.AA.A00N.01A	11	60264752	60291297	8	-1.9774	LARGE-LOSS	FOCAL	2	"MS4A12,MS4A13"
TCGA.AG.3909.01A	11	60264752	60292643	9	-1.3684	LARGE-LOSS	FOCAL	2	"MS4A12,MS4A13"
TCGA.AA.3941	11	60345134	60357023	3	-6.0852	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	60367184	60373439	4	-1.8737	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	60609546	60617648	4	-1.8139	LARGE-LOSS	FOCAL	1	CCDC86
TCGA.AA.A010.01A	11	60704659	60718419	8	-2.1264	LARGE-LOSS	FOCAL	1	SLC15A3
TCGA.AG.A01N.01A	11	61017089	61017376	2	-6.0528	LARGE-LOSS	FOCAL	1	PGA5
TCGA.AA.A02H.01A	11	61017089	61018562	3	-4.0266	LARGE-LOSS	FOCAL	1	PGA5
TCGA.AA.A01C.01A	11	61165197	61165639	2	-4.4702	LARGE-LOSS	FOCAL	1	TMEM216
TCGA.AA.A00N.01A	11	61562787	61580674	10	-1.3934	LARGE-LOSS	FOCAL	2	"FADS1,FEN1"
TCGA.AA.A00N.01A	11	61724277	61732792	9	-1.3582	LARGE-LOSS	FOCAL	2	"BEST1,FTH1"
TCGA.AG.A023.01A	11	61726913	61731495	4	-3.5087	LARGE-LOSS	FOCAL	1	BEST1
TCGA.AG.3881	11	62105924	62131659	3	-6.6163	LARGE-LOSS	FOCAL	1	ASRGL1
TCGA.AG.3878	11	62124744	62140068	3	-4.5482	LARGE-LOSS	FOCAL	1	ASRGL1
TCGA.AA.A004.01A	11	62346021	62368061	18	-1.4585	LARGE-LOSS	FOCAL	2	"MTA2,TUT1"
TCGA.AG.A023.01A	11	62373072	62376818	7	-2.9114	LARGE-LOSS	FOCAL	1	EML3
TCGA.AG.A01J.01A	11	62393265	62394522	4	-2.898	LARGE-LOSS	FOCAL	1	GANAB
TCGA.AA.A010.01A	11	62484409	62491726	9	-1.3824	LARGE-LOSS	FOCAL	1	HNRNPUL2
TCGA.AA.A00N.01A	11	62487468	62491726	8	-2.1224	LARGE-LOSS	FOCAL	1	HNRNPUL2
TCGA.AA.A01C.01A	11	62491032	62491726	3	-2.4428	LARGE-LOSS	FOCAL	1	HNRNPUL2
TCGA.D5.6538	11	62492123	62493599	3	-4.8884	LARGE-LOSS	FOCAL	1	HNRNPUL2
TCGA.AA.A00N.01A	11	62556454	62574890	18	-1.6124	LARGE-LOSS	FOCAL	4	"NXF1,STX5,TMEM179B,TMEM223"
TCGA.AG.A01J.01A	11	62557021	62564586	9	-1.4041	LARGE-LOSS	FOCAL	3	"NXF1,TMEM179B,TMEM223"
TCGA.AA.A010.01A	11	63517426	63525595	6	-2.4538	LARGE-LOSS	FOCAL	1	RTN3
TCGA.AA.A010.01A	11	63530848	63672246	23	-1.9172	LARGE-LOSS	FOCAL	3	"C11orf84,C11orf95,MARK2"
TCGA.AA.A010.01A	11	63673543	63683763	10	-2.5731	LARGE-LOSS	FOCAL	2	"MARK2,RCOR2"
TCGA.AF.3914.01A	11	63919716	63961961	4	-1.5172	LARGE-LOSS	FOCAL	2	"MACROD1,STIP1"
TCGA.AA.A004.01A	11	63970275	63970545	2	-7.7214	LARGE-LOSS	FOCAL	1	STIP1
TCGA.AG.A01J.01A	11	63970275	63978486	7	-2.692	LARGE-LOSS	FOCAL	2	"FERMT3,STIP1"
TCGA.AA.A010.01A	11	63986979	63998278	15	-1.981	LARGE-LOSS	FOCAL	4	"DNAJC4,FERMT3,NUDT22,TRPT1"
TCGA.AA.A010.01A	11	63999292	64013839	14	-2.9217	LARGE-LOSS	FOCAL	4	"DNAJC4,FKBP2,PPP1R14B,VEGFB"
TCGA.AA.A010.01A	11	64019070	64089011	46	-1.6482	LARGE-LOSS	FOCAL	8	"BAD,ESRRA,GPR137,KCNK4,PLCB3,PRDX5,TEX40,TRMT112"
TCGA.AA.A010.01A	11	64393908	64421085	10	-1.425	LARGE-LOSS	FOCAL	1	NRXN2
TCGA.AA.A010.01A	11	64494703	64504173	8	-1.9899	LARGE-LOSS	FOCAL	1	RASGRP2
TCGA.AA.A010.01A	11	64506783	64520493	15	-2.5292	LARGE-LOSS	FOCAL	2	"PYGM,RASGRP2"
TCGA.AA.A010.01A	11	64520999	64535037	12	-2.0786	LARGE-LOSS	FOCAL	2	"PYGM,SF1"
TCGA.AA.A010.01A	11	64535548	64591887	28	-2.6682	LARGE-LOSS	FOCAL	4	"CDC42BPG,MAP4K2,MEN1,SF1"
TCGA.AA.A00N.01A	11	64536442	64543870	5	-2.2127	LARGE-LOSS	FOCAL	1	SF1
TCGA.CK.5914.01A	11	64536442	64543870	5	-1.6106	LARGE-LOSS	FOCAL	1	SF1
TCGA.AA.A029.01A	11	64888115	64888933	3	-5.6712	LARGE-LOSS	FOCAL	1	FAU
TCGA.AA.A010.01A	11	65293028	65365790	48	-2.3999	LARGE-LOSS	FOCAL	7	"EHBP1L1,FAM89B,KCNK7,LTBP3,MAP3K11,SCYL1,SSSCA1"
TCGA.AA.A010.01A	11	65366898	65409674	35	-1.4647	LARGE-LOSS	FOCAL	3	"MAP3K11,PCNXL3,SIPA1"
TCGA.AG.A025.01A	11	65384248	65384700	2	-4.9253	LARGE-LOSS	FOCAL	1	PCNXL3
TCGA.AA.A010.01A	11	65412379	65429121	12	-2.2144	LARGE-LOSS	FOCAL	2	"RELA,SIPA1"
TCGA.AA.A010.01A	11	65545309	65562527	7	-2.0043	LARGE-LOSS	FOCAL	2	"AP5B1,OVOL1"
TCGA.AA.A010.01A	11	65628764	65634351	9	-1.8275	LARGE-LOSS	FOCAL	2	"EFEMP2,MUS81"
TCGA.AA.A010.01A	11	65635312	65655044	18	-2.2474	LARGE-LOSS	FOCAL	3	"CTSW,EFEMP2,FIBP"
TCGA.AG.A025.01A	11	65647298	65647639	2	-6.763	LARGE-LOSS	FOCAL	1	CTSW
TCGA.AA.A010.01A	11	65655353	65688750	13	-1.5603	LARGE-LOSS	FOCAL	5	"C11orf68,CCDC85B,DRAP1,FIBP,FOSL1"
TCGA.AA.A010.01A	11	65810061	65836099	20	-2.8199	LARGE-LOSS	FOCAL	2	"GAL3ST3,SF3B2"
TCGA.AG.A023.01A	11	65819839	65822935	4	-2.8357	LARGE-LOSS	FOCAL	1	SF3B2
TCGA.AA.A00N.01A	11	65820445	65836099	17	-1.4743	LARGE-LOSS	FOCAL	1	SF3B2
TCGA.AA.A02W.01A	11	66001208	66002721	3	-5.8008	LARGE-LOSS	FOCAL	1	PACS1
TCGA.AA.A010.01A	11	66026074	66036091	11	-1.6425	LARGE-LOSS	FOCAL	2	"KLC2,RAB1B"
TCGA.AA.A010.01A	11	66039218	66055513	12	-2.9288	LARGE-LOSS	FOCAL	3	"CNIH2,RAB1B,YIF1A"
TCGA.AA.A010.01A	11	66056361	66105121	12	-1.3811	LARGE-LOSS	FOCAL	5	"BRMS1,CD248,RIN1,TMEM151A,YIF1A"
TCGA.AA.A010.01A	11	66105637	66113961	9	-2.5297	LARGE-LOSS	FOCAL	2	"B4GAT1,BRMS1"
TCGA.AA.A010.01A	11	66130855	66135194	6	-1.4753	LARGE-LOSS	FOCAL	1	SLC29A2
TCGA.CK.5914.01A	11	66191031	66205596	6	-1.382	LARGE-LOSS	FOCAL	2	"MRPL11,NPAS4"
TCGA.AA.A00N.01A	11	66193355	66205596	5	-1.9541	LARGE-LOSS	FOCAL	2	"MRPL11,NPAS4"
TCGA.AG.3909.01A	11	66193355	66205596	5	-1.6764	LARGE-LOSS	FOCAL	2	"MRPL11,NPAS4"
TCGA.AA.A010.01A	11	66235562	66255335	12	-1.5243	LARGE-LOSS	FOCAL	2	"DPP3,PELI3"
TCGA.A6.6654	11	66331168	66333071	3	-4.2587	LARGE-LOSS	FOCAL	1	CTSF
TCGA.AA.A01Q.01A	11	66331342	66334933	6	-1.6042	LARGE-LOSS	FOCAL	1	CTSF
TCGA.AG.4009.01A	11	66331973	66334933	5	-1.4368	LARGE-LOSS	FOCAL	1	CTSF
TCGA.AA.A010.01A	11	66476333	66526454	11	-2.0573	LARGE-LOSS	FOCAL	2	"C11orf80,SPTBN2"
TCGA.AA.A00N.01A	11	66481075	66526454	9	-1.5538	LARGE-LOSS	FOCAL	2	"C11orf80,SPTBN2"
TCGA.AA.A010.01A	11	66595685	66631238	17	-2.0434	LARGE-LOSS	FOCAL	4	"C11orf80,LRFN4,PC,RCE1"
TCGA.AG.A01J.01A	11	66982804	66985152	3	-3.3663	LARGE-LOSS	FOCAL	1	KDM2A
TCGA.AA.A010.01A	11	67010431	67017575	5	-1.8539	LARGE-LOSS	FOCAL	1	KDM2A
TCGA.AA.A010.01A	11	67020136	67066463	20	-2.5645	LARGE-LOSS	FOCAL	3	"ADRBK1,ANKRD13D,KDM2A"
TCGA.A6.3808.01A	11	67254430	67286522	23	-1.8011	LARGE-LOSS	FOCAL	4	"AIP,CABP2,CDK2AP2,PITPNM1"
TCGA.AG.3909.01A	11	67375812	67379332	6	-1.435	LARGE-LOSS	FOCAL	1	NDUFV1
TCGA.AG.3594	11	67472904	67560617	10	-2.9307	LARGE-LOSS	FOCAL	0	None
TCGA.AY.A71X	11	68731676	68923596	71	-3.4562	LARGE-LOSS	FOCAL	3	"MRGPRD,MRGPRF,TPCN2"
TCGA.AA.3862.01A	11	68777247	68854526	21	-1.3492	LARGE-LOSS	FOCAL	2	"MRGPRF,TPCN2"
TCGA.AA.3861.01A	11	68777247	69457751	25	-1.4153	LARGE-LOSS	FOCAL	4	"CCND1,MRGPRF,MYEOV,TPCN2"
TCGA.AA.A00N.01A	11	69482223	69487932	4	-2.5156	LARGE-LOSS	FOCAL	1	ORAOV1
TCGA.AG.3909.01A	11	69482223	69487932	4	-2.086	LARGE-LOSS	FOCAL	1	ORAOV1
TCGA.CK.4951	11	70534510	70540450	3	-5.4195	LARGE-LOSS	FOCAL	1	SHANK2
TCGA.A6.3808.01A	11	71238326	71548396	16	-1.5219	LARGE-LOSS	FOCAL	8	"DEFB108B,FAM86C1,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,ZNF705E"
TCGA.AA.A010.01A	11	71929590	71948166	17	-2.4209	LARGE-LOSS	FOCAL	2	"FOLR2,INPPL1"
TCGA.AF.3914.01A	11	71939167	71952097	15	-1.4278	LARGE-LOSS	FOCAL	2	"INPPL1,PHOX2A"
TCGA.AA.A010.01A	11	72466676	72491978	5	-1.378	LARGE-LOSS	FOCAL	1	STARD10
TCGA.A6.3808.01A	11	72946688	73076394	24	-1.3916	LARGE-LOSS	FOCAL	3	"ARHGEF17,P2RY2,P2RY6"
TCGA.AG.A02X.01A	11	73007512	73009282	3	-4.156	LARGE-LOSS	FOCAL	1	P2RY6
TCGA.AA.A010.01A	11	73057888	73078598	19	-1.7459	LARGE-LOSS	FOCAL	1	ARHGEF17
TCGA.AA.A00N.01A	11	73589748	73611268	5	-1.503	LARGE-LOSS	FOCAL	1	PAAF1
TCGA.CK.5914.01A	11	73589748	73611268	5	-1.4728	LARGE-LOSS	FOCAL	1	PAAF1
TCGA.AF.3914.01A	11	73610154	73611268	2	-2.2807	LARGE-LOSS	FOCAL	1	PAAF1
TCGA.AA.3811	11	74047225	74048400	3	-3.7999	LARGE-LOSS	FOCAL	1	PGM2L1
TCGA.AA.3844	11	74047225	74048400	3	-3.9964	LARGE-LOSS	FOCAL	1	PGM2L1
TCGA.AA.3864	11	74047225	74048400	3	-1.4925	LARGE-LOSS	FOCAL	1	PGM2L1
TCGA.AA.A00N.01A	11	74047650	74062381	9	-2.2214	LARGE-LOSS	FOCAL	1	PGM2L1
TCGA.AG.3909.01A	11	74047650	74062381	9	-1.5975	LARGE-LOSS	FOCAL	1	PGM2L1
TCGA.AA.A01C.01A	11	74053514	74054318	3	-1.9383	LARGE-LOSS	FOCAL	1	PGM2L1
TCGA.AA.A01K.01A	11	76061857	76063486	4	-3.4428	LARGE-LOSS	FOCAL	1	PRKRIR
TCGA.A6.3808.01A	11	76873134	76903069	19	-1.3845	LARGE-LOSS	FOCAL	1	MYO7A
TCGA.A6.3808.01A	11	77602338	77669740	15	-2.6972	LARGE-LOSS	FOCAL	1	INTS4
TCGA.AA.A010.01A	11	77884840	77918543	8	-2.0664	LARGE-LOSS	FOCAL	2	"KCTD21,USP35"
TCGA.AA.3982	11	78857222	78857437	3	-4.5961	LARGE-LOSS	FOCAL	1	TENM4
TCGA.AA.3844	11	79046416	79046828	3	-2.8895	LARGE-LOSS	FOCAL	1	TENM4
TCGA.A6.2685	11	79390749	79394795	3	-4.2096	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	79873109	82093498	961	-1.4111	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	80971261	80980656	6	-5.55685	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01Y	11	81503991	81517157	5	-4.6975	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	81558549	81643955	31	-2.41465	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	82065322	82080009	3	-3.55715	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	82317459	82321636	4	-1.63975	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	82562485	82563156	3	-1.8235	LARGE-LOSS	FOCAL	1	PRCP
TCGA.G4.6315	11	82829767	82850850	4	-1.8279	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	82872331	82882812	8	-1.4027	LARGE-LOSS	FOCAL	1	PCF11
TCGA.DY.A1DG	11	83774414	83779425	3	-5.3853	LARGE-LOSS	FOCAL	1	DLG2
TCGA.AA.3941	11	84161960	84181438	11	-5.5396	LARGE-LOSS	FOCAL	1	DLG2
TCGA.AA.3850	11	84175048	84183434	7	-6.36755	LARGE-LOSS	FOCAL	1	DLG2
TCGA.CK.5914.01A	11	85347041	85374510	7	-1.431	LARGE-LOSS	FOCAL	3	"CREBZF,TMEM126A,TMEM126B"
TCGA.AA.A00N.01A	11	85365057	85374510	5	-1.5348	LARGE-LOSS	FOCAL	2	"CREBZF,TMEM126A"
TCGA.AA.A00N.01A	11	85961290	85968501	5	-1.4827	LARGE-LOSS	FOCAL	1	EED
TCGA.AA.A00N.01A	11	86518654	86662932	8	-1.716	LARGE-LOSS	FOCAL	2	"FZD4,PRSS23"
TCGA.A6.3808.01A	11	86518654	86665856	9	-1.9974	LARGE-LOSS	FOCAL	2	"FZD4,PRSS23"
TCGA.AA.3712	11	88373851	88380348	8	-4.6928	LARGE-LOSS	FOCAL	1	GRM5
TCGA.AF.2692	11	88642584	88681095	11	-2.4865	LARGE-LOSS	FOCAL	1	GRM5
TCGA.A6.3808.01A	11	89531360	89819172	9	-2.9454	LARGE-LOSS	FOCAL	7	"TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,UBTFL1"
TCGA.AA.A010.01A	11	89577916	89730283	5	-1.8634	LARGE-LOSS	FOCAL	4	"TRIM49D1,TRIM49D2,TRIM64,TRIM64B"
TCGA.AA.A00N.01A	11	89581310	89732653	10	-1.7607	LARGE-LOSS	FOCAL	4	"TRIM49D1,TRIM49D2,TRIM64,TRIM64B"
TCGA.AA.A00N.01A	11	89943632	89951227	5	-1.3767	LARGE-LOSS	FOCAL	1	CHORDC1
TCGA.AA.3850	11	90470194	90491399	12	-4.39185	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	90575315	90581711	4	-8.12245	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	90575315	90581711	4	-9.2601	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	90590659	91998484	493	-1.4603	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	92970764	92989857	7	-1.56605	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5665	11	93255013	93255342	2	-9.1348	LARGE-LOSS	FOCAL	1	SMCO4
TCGA.A6.5665	11	93701104	93701587	2	-9.1348	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	93960072	93961318	3	-4.91225	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	94800382	94803564	3	-2.4434	LARGE-LOSS	FOCAL	1	SRSF8
TCGA.AA.3811	11	94916675	94943963	5	-1.9111	LARGE-LOSS	FOCAL	1	SESN3
TCGA.DC.6158	11	95429635	95437945	4	-1.9245	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	95567387	95569529	3	-5.59005	LARGE-LOSS	FOCAL	1	MTMR2
TCGA.G4.6317	11	97075074	99372730	818	-1.4096	LARGE-LOSS	FOCAL	1	CNTN5
TCGA.AA.3864	11	100223835	100226114	3	-4.8574	LARGE-LOSS	FOCAL	1	CNTN5
TCGA.AA.3941	11	100223835	100226114	3	-8.9861	LARGE-LOSS	FOCAL	1	CNTN5
TCGA.AA.3989	11	100223835	100228728	4	-2.0731	LARGE-LOSS	FOCAL	1	CNTN5
TCGA.D5.6898	11	100713226	100717142	3	-2.0167	LARGE-LOSS	FOCAL	1	ARHGAP42
TCGA.AA.3941	11	101231235	101257277	13	-4.8651	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	101231235	101268886	17	-2.02725	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02H.01A	11	102584041	102584442	2	-5.1282	LARGE-LOSS	FOCAL	1	MMP8
TCGA.AA.A00N.01A	11	102953461	102993526	14	-1.4271	LARGE-LOSS	FOCAL	2	"DCUN1D5,DYNC2H1"
TCGA.AA.A00N.01A	11	103907513	104034523	3	-1.4572	LARGE-LOSS	FOCAL	2	"DDI1,PDGFD"
TCGA.AA.3864	11	104621984	104622205	3	-3.3567	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	104722389	104765660	21	-4.02785	LARGE-LOSS	FOCAL	1	CASP12
TCGA.AA.3864	11	104878386	104880039	5	-1.7238	LARGE-LOSS	FOCAL	1	CASP5
TCGA.AA.3989	11	104879699	104880039	3	-1.6396	LARGE-LOSS	FOCAL	1	CASP5
TCGA.DY.A1DG	11	106619738	106620201	4	-5.0271	LARGE-LOSS	FOCAL	1	GUCY1A2
TCGA.AA.3850	11	107295293	107297789	6	-1.66925	LARGE-LOSS	FOCAL	1	CWF19L2
TCGA.DC.6158	11	107956770	107985111	4	-3.9803	LARGE-LOSS	FOCAL	1	CUL5
TCGA.AA.A029.01A	11	108546283	108564205	7	-2.9517	LARGE-LOSS	FOCAL	1	DDX10
TCGA.AA.3982	11	109327621	109333711	3	-4.1556	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	110509166	110511047	3	-4.64935	LARGE-LOSS	FOCAL	1	ARHGAP20
TCGA.AA.3850	11	110997399	111036105	15	-1.33085	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	111612725	111657069	15	-1.8408	LARGE-LOSS	FOCAL	2	"ALG9,PPP2R1B"
TCGA.AA.A01C.01A	11	111622831	111635964	9	-1.4625	LARGE-LOSS	FOCAL	1	PPP2R1B
TCGA.AF.3914.01A	11	111635511	111636945	3	-1.6329	LARGE-LOSS	FOCAL	1	PPP2R1B
TCGA.AA.A02E.01A	11	111724061	111728277	3	-2.3638	LARGE-LOSS	FOCAL	1	ALG9
TCGA.AA.A01C.01A	11	111749288	111750227	3	-2.2812	LARGE-LOSS	FOCAL	2	"C11orf1,FDXACB1"
TCGA.AA.A00N.01A	11	112070374	112104153	13	-1.6884	LARGE-LOSS	FOCAL	2	"BCO2,PTS"
TCGA.AA.3941	11	112826708	112936328	45	-1.4423	LARGE-LOSS	FOCAL	1	NCAM1
TCGA.AA.3850	11	112840744	112852945	15	-1.65375	LARGE-LOSS	FOCAL	1	NCAM1
TCGA.AZ.4614	11	112947590	112951024	5	-3.244	LARGE-LOSS	FOCAL	1	NCAM1
TCGA.AZ.4614	11	112951636	112951926	4	-8.2277	LARGE-LOSS	FOCAL	1	NCAM1
TCGA.AA.A01D.01A	11	113264183	113266739	4	-3.6859	LARGE-LOSS	FOCAL	1	ANKK1
TCGA.AA.A02E.01A	11	113802032	113803618	4	-4.2227	LARGE-LOSS	FOCAL	1	HTR3B
TCGA.AA.3982	11	114637836	114640800	3	-1.6389	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	11	115092996	115093437	3	-2.1751	LARGE-LOSS	FOCAL	1	CADM1
TCGA.AA.3982	11	115266364	115268534	4	-1.4234	LARGE-LOSS	FOCAL	1	CADM1
TCGA.AG.3909.01A	11	116636034	116657640	14	-1.4935	LARGE-LOSS	FOCAL	2	"BUD13,ZPR1"
TCGA.AA.A00N.01A	11	116646367	116658146	14	-1.8699	LARGE-LOSS	FOCAL	1	ZPR1
TCGA.AA.A00N.01A	11	116968822	117034439	5	-1.3448	LARGE-LOSS	FOCAL	2	"PAFAH1B2,SIK3"
TCGA.AA.A02W.01A	11	117062547	117063261	3	-4.4074	LARGE-LOSS	FOCAL	1	SIDT2
TCGA.AG.A023.01A	11	117063261	117064522	3	-3.4387	LARGE-LOSS	FOCAL	1	SIDT2
TCGA.AA.A010.01A	11	117089140	117117488	15	-1.4308	LARGE-LOSS	FOCAL	2	"PCSK7,RNF214"
TCGA.AF.3914.01A	11	117100111	117117488	6	-1.4086	LARGE-LOSS	FOCAL	2	"PCSK7,RNF214"
TCGA.AA.A00N.01A	11	117104940	117150586	6	-1.8671	LARGE-LOSS	FOCAL	1	RNF214
TCGA.AG.A023.01A	11	117278591	117280347	3	-2.5253	LARGE-LOSS	FOCAL	1	CEP164
TCGA.F5.6465	11	118074116	118076068	3	-1.4031	LARGE-LOSS	FOCAL	1	AMICA1
TCGA.AA.A010.01A	11	118209808	118213194	5	-1.5432	LARGE-LOSS	FOCAL	1	CD3D
TCGA.AA.A02F.01A	11	118390290	118391472	3	-4.8125	LARGE-LOSS	FOCAL	1	KMT2A
TCGA.AG.A015.01A	11	118415580	118416085	2	-2.2979	LARGE-LOSS	FOCAL	2	"IFT46,TMEM25"
TCGA.AG.A01W.01A	11	118566190	118571295	6	-1.4418	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	11	118626939	118629432	3	-2.4757	LARGE-LOSS	FOCAL	1	DDX6
TCGA.A6.3808.01A	11	118883888	118888041	5	-3.2729	LARGE-LOSS	FOCAL	2	"CCDC84,RPS25"
TCGA.AA.A010.01A	11	118899915	118944468	25	-2.0826	LARGE-LOSS	FOCAL	3	"HYOU1,SLC37A4,VPS11"
TCGA.AF.3914.01A	11	118923299	118926728	6	-1.5195	LARGE-LOSS	FOCAL	1	HYOU1
TCGA.AA.A00O.01A	11	118960360	118963413	5	-3.8502	LARGE-LOSS	FOCAL	1	HMBS
TCGA.AA.A01D.01A	11	118967653	118969059	3	-5.7848	LARGE-LOSS	FOCAL	1	DPAGT1
TCGA.AA.A010.01A	11	119158508	119185812	13	-2.2111	LARGE-LOSS	FOCAL	2	"CBL,MCAM"
TCGA.CK.5914.01A	11	119228162	119230820	6	-1.406	LARGE-LOSS	FOCAL	1	USP2
TCGA.AA.A00N.01A	11	119228162	119243400	8	-1.449	LARGE-LOSS	FOCAL	1	USP2
TCGA.AA.A01D.01A	11	119229735	119230820	3	-4.5333	LARGE-LOSS	FOCAL	1	USP2
TCGA.AA.A00N.01A	11	120186003	120207869	7	-1.3964	LARGE-LOSS	FOCAL	3	"ARHGEF12,POU2F3,TMEM136"
TCGA.AA.A010.01A	11	120186003	120207869	7	-1.3548	LARGE-LOSS	FOCAL	3	"ARHGEF12,POU2F3,TMEM136"
TCGA.AA.3850	11	120922227	120931053	6	-1.69915	LARGE-LOSS	FOCAL	1	TBCEL
TCGA.AA.A010.01A	11	121323014	121348790	3	-1.4031	LARGE-LOSS	FOCAL	1	SORL1
TCGA.AA.A02F.01A	11	121477502	121478773	3	-4.9582	LARGE-LOSS	FOCAL	1	SORL1
TCGA.AA.3850	11	122337410	122362529	3	-4.50305	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	122720768	122775819	13	-1.5999	LARGE-LOSS	FOCAL	2	"C11orf63,CRTAM"
TCGA.A6.3808.01A	11	122738070	122931831	25	-1.5241	LARGE-LOSS	FOCAL	4	"BSX,C11orf63,CRTAM,HSPA8"
TCGA.AA.A02F.01A	11	122930129	122930772	2	-6.4461	LARGE-LOSS	FOCAL	1	HSPA8
TCGA.AA.3982	11	124095646	124115000	8	-1.4396	LARGE-LOSS	FOCAL	1	OR8G2
TCGA.AA.3982	11	124237317	124247074	10	-1.3227	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	124617404	124644568	17	-1.4359	LARGE-LOSS	FOCAL	3	"ESAM,MSANTD2,VSIG2"
TCGA.AA.A00N.01A	11	125366367	125452227	10	-1.4441	LARGE-LOSS	FOCAL	2	"EI24,LOC403312"
TCGA.AA.A00N.01A	11	125483942	125507291	10	-1.5083	LARGE-LOSS	FOCAL	2	"CHEK1,STT3A"
TCGA.AA.A010.01A	11	125703183	125765885	6	-1.3322	LARGE-LOSS	FOCAL	3	"HYLS1,PATE4,PUS3"
TCGA.AA.A00N.01A	11	125763643	125781198	11	-1.9671	LARGE-LOSS	FOCAL	3	"DDX25,HYLS1,PUS3"
TCGA.AG.3909.01A	11	125763643	125781198	7	-1.3824	LARGE-LOSS	FOCAL	3	"DDX25,HYLS1,PUS3"
TCGA.CK.5914.01A	11	125763643	125781198	10	-1.5109	LARGE-LOSS	FOCAL	3	"DDX25,HYLS1,PUS3"
TCGA.A6.3808.01A	11	126131262	126147321	21	-1.8462	LARGE-LOSS	FOCAL	3	"FAM118B,FOXRED1,SRPR"
TCGA.AG.A025.01A	11	126135605	126137838	6	-4.0369	LARGE-LOSS	FOCAL	1	SRPR
TCGA.AA.A02E.01A	11	126142814	126145641	5	-3.279	LARGE-LOSS	FOCAL	1	FOXRED1
TCGA.AA.A010.01A	11	126201261	126215230	4	-1.3836	LARGE-LOSS	FOCAL	1	DCPS
TCGA.AG.3890	11	126936433	126936555	3	-5.2632	LARGE-LOSS	FOCAL	0	None
TCGA.AH.6643	11	127273299	127498348	109	-2.7921	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	11	128283444	128286625	4	-2.7968	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	11	128989743	128994349	4	-3.30135	LARGE-LOSS	FOCAL	1	ARHGAP32
TCGA.AG.A015.01A	11	129754600	129758452	4	-1.3485	LARGE-LOSS	FOCAL	1	NFRKB
TCGA.AA.A010.01A	11	133805901	133826531	6	-1.5592	LARGE-LOSS	FOCAL	1	IGSF9B
TCGA.AG.3909.01A	11	134118268	134120977	6	-1.7577	LARGE-LOSS	FOCAL	1	THYN1
TCGA.AA.A004.01A	11	134128850	134131601	4	-3.6155	LARGE-LOSS	FOCAL	1	ACAD8
TCGA.AA.A010.01A	11	134212611	134226165	5	-1.9064	LARGE-LOSS	FOCAL	1	GLB1L2
TCGA.AG.A023.01A	11	134251787	134257391	3	-2.8677	LARGE-LOSS	FOCAL	1	B3GAT1
TCGA.D5.7000	11	134405963	134406308	3	-4.7417	LARGE-LOSS	FOCAL	0	None
TCGA.D5.7000	11	134601011	134603991	3	-4.3555	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2678	12	259204	261033	3	-1.3366	LARGE-LOSS	FOCAL	1	IQSEC3
TCGA.AA.A010.01A	12	280216	318892	15	-1.9292	LARGE-LOSS	FOCAL	2	"IQSEC3,SLC6A12"
TCGA.AA.A010.01A	12	539765	569491	7	-1.3986	LARGE-LOSS	FOCAL	1	CCDC77
TCGA.AG.4015	12	870969	877087	3	-8.1344	LARGE-LOSS	FOCAL	1	WNK1
TCGA.AG.4009.01A	12	1702002	1741774	3	-1.4306	LARGE-LOSS	FOCAL	2	"FBXL14,WNT5B"
TCGA.CM.6166	12	1953865	1983781	24	-3.4801	LARGE-LOSS	FOCAL	1	CACNA2D4
TCGA.AA.3688	12	2247431	2250067	3	-8.632	LARGE-LOSS	FOCAL	1	CACNA1C
TCGA.AG.3591	12	2247431	2250067	3	-1.9231	LARGE-LOSS	FOCAL	1	CACNA1C
TCGA.AH.6644	12	2247431	2250067	3	-4.9077	LARGE-LOSS	FOCAL	1	CACNA1C
TCGA.D5.6532	12	2247431	2250067	3	-6.8557	LARGE-LOSS	FOCAL	1	CACNA1C
TCGA.AA.A010.01A	12	2904274	2921878	10	-2.66	LARGE-LOSS	FOCAL	2	"FKBP4,ITFG2"
TCGA.AA.A017.01A	12	2926336	2926999	2	-3.3319	LARGE-LOSS	FOCAL	1	ITFG2
TCGA.DC.4745	12	4875254	4876032	3	-4.3581	LARGE-LOSS	FOCAL	1	GALNT8
TCGA.AG.3584	12	5183642	5185617	3	-4.0609	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02E.01A	12	5603401	5604101	3	-6.8913	LARGE-LOSS	FOCAL	1	NTF3
TCGA.G4.6322	12	6325913	6330611	3	-3.8873	LARGE-LOSS	FOCAL	1	CD9
TCGA.AG.3909.01A	12	6427874	6443226	11	-1.3714	LARGE-LOSS	FOCAL	2	"PLEKHG6,TNFRSF1A"
TCGA.AA.A010.01A	12	6858962	6959584	46	-1.4107	LARGE-LOSS	FOCAL	8	"CD4,CDCA3,GNB3,GPR162,LAG3,MLF2,P3H3,PTMS"
TCGA.AF.3914.01A	12	6878708	6883752	6	-1.852	LARGE-LOSS	FOCAL	2	"LAG3,PTMS"
TCGA.AA.A01I.01A	12	6973907	6974282	2	-4.9658	LARGE-LOSS	FOCAL	1	USP5
TCGA.AG.A02X.01A	12	6973907	6975095	3	-1.5275	LARGE-LOSS	FOCAL	1	USP5
TCGA.AA.A010.01A	12	7014746	7016431	3	-1.4275	LARGE-LOSS	FOCAL	1	LRRC23
TCGA.AA.A010.01A	12	7019002	7027056	8	-2.0095	LARGE-LOSS	FOCAL	2	"ENO2,LRRC23"
TCGA.AA.A010.01A	12	7028690	7044728	6	-2.6056	LARGE-LOSS	FOCAL	2	"ATN1,ENO2"
TCGA.AG.A01W.01A	12	7185065	7186988	4	-1.3335	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	12	7354296	7355157	3	-2.0198	LARGE-LOSS	FOCAL	1	PEX5
TCGA.AA.A00N.01A	12	7584992	7596608	4	-1.4923	LARGE-LOSS	FOCAL	1	CD163L1
TCGA.AM.5820	12	7803645	7970720	35	-1.793	LARGE-LOSS	FOCAL	7	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB,SLC2A14"
TCGA.A6.3808.01A	12	7864111	8085535	32	-1.895	LARGE-LOSS	FOCAL	6	"CLEC4C,DPPA3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.DC.6158	12	8008131	8116020	23	-2.7868	LARGE-LOSS	FOCAL	2	"SLC2A14,SLC2A3"
TCGA.AA.A010.01A	12	9070264	9085121	7	-1.5995	LARGE-LOSS	FOCAL	1	PHC1
TCGA.AA.A01C.01A	12	9095954	9096350	2	-3.7397	LARGE-LOSS	FOCAL	1	M6PR
TCGA.AA.A00N.01A	12	9220349	9242456	16	-1.3976	LARGE-LOSS	FOCAL	1	A2M
TCGA.A6.3808.01A	12	9392100	9596081	22	-1.6178	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A023.01A	12	9573936	9578601	5	-1.9517	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	12	9577084	9578601	3	-1.749	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	10370605	10374319	3	-1.7893	LARGE-LOSS	FOCAL	1	GABARAPL1
TCGA.AA.A01C.01A	12	10373002	10374319	2	-2.2161	LARGE-LOSS	FOCAL	1	GABARAPL1
TCGA.DC.6157	12	10402154	10410681	7	-1.3247	LARGE-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	12	10474935	10477606	3	-5.2543	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6461	12	10491511	10648843	48	-1.5155	LARGE-LOSS	FOCAL	6	"KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRK1"
TCGA.A6.3808.01A	12	10568180	10601808	13	-1.3861	LARGE-LOSS	FOCAL	3	"KLRC1,KLRC2,KLRC3"
TCGA.AA.A02H.01A	12	10583668	10586339	3	-1.3402	LARGE-LOSS	FOCAL	1	KLRC2
TCGA.AA.A00N.01A	12	10868241	10871664	3	-1.6595	LARGE-LOSS	FOCAL	1	YBX3
TCGA.AA.3811	12	10913110	10930263	13	-1.6997	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	12	10926356	10926658	3	-5.9176	LARGE-LOSS	FOCAL	0	None
TCGA.CI.6620	12	11519427	11523564	3	-5.4605	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2671	12	11519427	11526288	4	-7.3906	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3556	12	11519427	11526288	4	-1.4239	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D7	12	11519427	11526288	3	-7.3873	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1DA	12	11519427	11526288	3	-8.1549	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3881	12	11523541	11526288	3	-1.6379	LARGE-LOSS	FOCAL	0	None
TCGA.F5.6702	12	11523541	11526288	3	-4.4018	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	12	11523541	11553367	3	-1.9267	LARGE-LOSS	FOCAL	1	PRB2
TCGA.AA.3811	12	11526288	11555010	3	-4.9513	LARGE-LOSS	FOCAL	1	PRB2
TCGA.AA.3982	12	11553367	11564510	3	-5.5426	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A02G.01A	12	13219525	13220041	2	-4.3571	LARGE-LOSS	FOCAL	1	KIAA1467
TCGA.AA.3952	12	13296184	13301295	3	-5.1815	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2693	12	13331337	13335139	3	-4.6301	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D7	12	13331337	13335139	3	-2.4635	LARGE-LOSS	FOCAL	0	None
TCGA.CA.5255	12	13334861	13336366	3	-4.6866	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	12	14927953	14930369	3	-1.4649	LARGE-LOSS	FOCAL	1	H2AFJ
TCGA.F4.6805	12	15153254	15267915	52	-1.7987	LARGE-LOSS	FOCAL	1	RERG
TCGA.AA.A00N.01A	12	18641375	18658209	6	-1.3914	LARGE-LOSS	FOCAL	1	PIK3C2G
TCGA.AA.A010.01A	12	19282682	19285268	3	-2.3132	LARGE-LOSS	FOCAL	1	PLEKHA5
TCGA.AA.3844	12	20235252	20238544	3	-1.4425	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4614	12	20235455	20238865	3	-6.5386	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	12	20727147	20729964	3	-1.5037	LARGE-LOSS	FOCAL	1	PDE3A
TCGA.AA.3844	12	21077170	21079896	3	-2.9486	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	12	21077170	21079896	3	-4.8705	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	12	21077170	21079896	3	-3.3624	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A029.01A	12	21679313	21679762	2	-4.4114	LARGE-LOSS	FOCAL	1	SPX
TCGA.AA.3850	12	23905692	23908684	3	-7.66115	LARGE-LOSS	FOCAL	1	SOX5
TCGA.QG.A5YW	12	24920712	24928073	3	-6.8551	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	25031417	25101767	5	-1.4206	LARGE-LOSS	FOCAL	1	BCAT1
TCGA.AF.A56K	12	25995387	25997791	3	-2.0942	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	12	26274961	26277405	4	-2.8524	LARGE-LOSS	FOCAL	1	BHLHE41
TCGA.AF.3914.01A	12	26274961	26277405	4	-1.8373	LARGE-LOSS	FOCAL	1	BHLHE41
TCGA.AG.4009.01A	12	26276526	26277405	3	-1.387	LARGE-LOSS	FOCAL	1	BHLHE41
TCGA.AA.A00N.01A	12	26276526	26383612	6	-1.6885	LARGE-LOSS	FOCAL	2	"BHLHE41,SSPN"
TCGA.AA.A010.01A	12	27915641	28122280	9	-1.6539	LARGE-LOSS	FOCAL	3	"KLHL42,MANSC4,PTHLH"
TCGA.AA.3850	12	28583300	28658038	27	-1.66215	LARGE-LOSS	FOCAL	1	CCDC91
TCGA.AA.3941	12	28634637	28652274	7	-2.044	LARGE-LOSS	FOCAL	1	CCDC91
TCGA.AA.3941	12	29097003	29113862	14	-1.6503	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	12	29097003	29115197	16	-2.05375	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6533	12	29136778	29137927	3	-5.2778	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6533	12	29699087	30832778	561	-3.6535	LARGE-LOSS	FOCAL	2	"IPO8,TMTC1"
TCGA.CA.5797	12	30239418	30243630	3	-2.3358	LARGE-LOSS	FOCAL	0	None
TCGA.QG.A5YX	12	31096150	31146533	41	-1.4109	LARGE-LOSS	FOCAL	1	TSPAN11
TCGA.F5.6863	12	31129895	31131711	3	-3.8193	LARGE-LOSS	FOCAL	1	TSPAN11
TCGA.A6.3808.01A	12	31132454	31250800	19	-1.8976	LARGE-LOSS	FOCAL	2	"DDX11,TSPAN11"
TCGA.AA.3693	12	31907273	31908356	3	-4.0428	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6539	12	31907273	31908356	3	-4.5847	LARGE-LOSS	FOCAL	0	None
TCGA.DC.5337	12	31907273	31909907	4	-1.327	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3516	12	31908049	31909907	3	-2.005	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3581	12	31908049	31909907	3	-3.5736	LARGE-LOSS	FOCAL	0	None
TCGA.AF.6672	12	32331194	32334491	3	-1.7328	LARGE-LOSS	FOCAL	1	BICD1
TCGA.A6.3808.01A	12	32763688	32778551	6	-2.146	LARGE-LOSS	FOCAL	1	FGD4
TCGA.AA.3986	12	33293906	33303865	3	-3.89	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3885	12	33302437	33303865	4	-4.4176	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1DA	12	33302437	33303865	4	-6.1597	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6314	12	33302437	33303865	4	-2.6172	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1HA	12	33303292	33303865	3	-8.2388	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A026	12	34256891	34264088	3	-1.8232	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3949	12	37880477	37913468	3	-1.9001	LARGE-LOSS	FOCAL	0	None
TCGA.4N.A93T	12	37940820	37947189	3	-4.2206	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3986	12	38660463	38671948	4	-3.7621	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	12	39014578	39024019	4	-7.73165	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6172	12	39627796	41711997	596	-1.8388	LARGE-LOSS	FOCAL	8	"ABCD2,C12orf40,CNTN1,KIF21A,LRRK2,MUC19,PDZRN4,SLC2A13"
TCGA.AA.A00N.01A	12	40734049	40761429	11	-1.6152	LARGE-LOSS	FOCAL	1	LRRK2
TCGA.AG.A023.01A	12	40834306	40963450	9	-1.6722	LARGE-LOSS	FOCAL	1	MUC19
TCGA.AA.3941	12	40872855	40873277	3	-6.9662	LARGE-LOSS	FOCAL	1	MUC19
TCGA.AG.A01N.01A	12	40936308	40952967	15	-1.4695	LARGE-LOSS	FOCAL	1	MUC19
TCGA.AA.A00N.01A	12	42729669	42748904	3	-1.7104	LARGE-LOSS	FOCAL	1	PPHLN1
TCGA.AA.3844	12	43605554	43606228	4	-1.3597	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	12	43606190	43612105	8	-1.63825	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A02G.01A	12	44194198	44198284	3	-2.6808	LARGE-LOSS	FOCAL	1	TWF1
TCGA.AA.A010.01A	12	45833522	46149632	4	-2.2748	LARGE-LOSS	FOCAL	2	"ANO6,ARID2"
TCGA.AA.A03J	12	46574920	46579387	3	-1.7692	LARGE-LOSS	FOCAL	1	SLC38A1
TCGA.AA.A00N.01A	12	46633410	46764910	11	-1.7397	LARGE-LOSS	FOCAL	2	"SLC38A1,SLC38A2"
TCGA.AG.A02G.01A	12	46756757	46758832	4	-3.3111	LARGE-LOSS	FOCAL	1	SLC38A2
TCGA.AA.3982	12	46958227	46972144	3	-6.6528	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	12	47471178	47472190	2	-1.7887	LARGE-LOSS	FOCAL	1	AMIGO2
TCGA.AU.6004	12	47621117	47630596	3	-4.2174	LARGE-LOSS	FOCAL	1	PCED1B
TCGA.AG.A00H.01A	12	48142212	48181790	15	-1.7136	LARGE-LOSS	FOCAL	3	"HDAC7,RAPGEF3,SLC48A1"
TCGA.AA.A010.01A	12	48152235	48182991	13	-1.7927	LARGE-LOSS	FOCAL	3	"HDAC7,RAPGEF3,SLC48A1"
TCGA.AA.A00N.01A	12	48357978	48367148	7	-1.5229	LARGE-LOSS	FOCAL	2	"COL2A1,TMEM106C"
TCGA.AA.A010.01A	12	49164528	49176357	13	-1.7151	LARGE-LOSS	FOCAL	1	ADCY6
TCGA.AA.A02R.01A	12	49224886	49226187	3	-3.9301	LARGE-LOSS	FOCAL	1	DDX23
TCGA.AG.A02G.01A	12	49229896	49231295	5	-2.3688	LARGE-LOSS	FOCAL	1	DDX23
TCGA.CK.5914.01A	12	49310702	49317499	7	-1.4507	LARGE-LOSS	FOCAL	2	"CCDC65,FKBP11"
TCGA.AA.A010.01A	12	49442395	49447751	7	-1.5988	LARGE-LOSS	FOCAL	1	KMT2D
TCGA.AA.A010.01A	12	49448043	49463446	9	-1.8982	LARGE-LOSS	FOCAL	2	"KMT2D,RHEBL1"
TCGA.AA.A00N.01A	12	49448992	49462763	7	-1.7489	LARGE-LOSS	FOCAL	2	"KMT2D,RHEBL1"
TCGA.AG.A02G.01A	12	49458832	49460226	4	-5.3196	LARGE-LOSS	FOCAL	1	RHEBL1
TCGA.AG.A023.01A	12	49458832	49460697	5	-2.8674	LARGE-LOSS	FOCAL	1	RHEBL1
TCGA.AA.A010.01A	12	49521699	49524981	4	-1.854	LARGE-LOSS	FOCAL	1	TUBA1B
TCGA.AG.A015.01A	12	49522973	49523236	2	-2.1826	LARGE-LOSS	FOCAL	1	TUBA1B
TCGA.AG.A00H.01A	12	49579144	49580046	2	-5.4866	LARGE-LOSS	FOCAL	1	TUBA1A
TCGA.AG.A01L.01A	12	50195610	50196694	2	-1.8055	LARGE-LOSS	FOCAL	1	NCKAP5L
TCGA.AA.A010.01A	12	50344622	50387877	18	-1.6942	LARGE-LOSS	FOCAL	4	"AQP2,AQP5,AQP6,RACGAP1"
TCGA.A6.3808.01A	12	50867161	50869281	3	-3.66	LARGE-LOSS	FOCAL	1	LARP4
TCGA.BM.6198	12	51213432	51218322	3	-1.71855	LARGE-LOSS	FOCAL	1	ATF1
TCGA.AG.A023.01A	12	51497433	51497875	2	-2.8147	LARGE-LOSS	FOCAL	1	TFCP2
TCGA.AA.A010.01A	12	52180295	52215997	8	-1.9494	LARGE-LOSS	FOCAL	2	"FIGNL2,SCN8A"
TCGA.AA.A010.01A	12	52314505	52400817	11	-1.3422	LARGE-LOSS	FOCAL	3	"ACVR1B,ACVRL1,GRASP"
TCGA.AA.A010.01A	12	52402897	52407871	4	-3.1537	LARGE-LOSS	FOCAL	1	GRASP
TCGA.AA.3982	12	52504037	52513251	3	-3.9501	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	53068957	53096674	15	-1.3437	LARGE-LOSS	FOCAL	2	"KRT1,KRT77"
TCGA.CK.5914.01A	12	53070831	53072288	4	-1.4712	LARGE-LOSS	FOCAL	1	KRT1
TCGA.AA.A010.01A	12	53410210	53416230	5	-1.433	LARGE-LOSS	FOCAL	1	EIF4B
TCGA.AA.A010.01A	12	53421535	53451313	20	-2.4378	LARGE-LOSS	FOCAL	2	"EIF4B,TNS2"
TCGA.AA.A010.01A	12	53452070	53469480	17	-1.4982	LARGE-LOSS	FOCAL	2	"SPRYD3,TNS2"
TCGA.AA.A00N.01A	12	53573505	53585293	8	-1.8453	LARGE-LOSS	FOCAL	3	"CSAD,ITGB7,ZNF740"
TCGA.AA.A02R.01A	12	53681764	53686603	10	-2.0495	LARGE-LOSS	FOCAL	1	ESPL1
TCGA.AA.A00N.01A	12	53836419	53873108	16	-1.3365	LARGE-LOSS	FOCAL	2	"PCBP2,PRR13"
TCGA.AA.A01K.01A	12	53877646	53878019	2	-7.5161	LARGE-LOSS	FOCAL	1	MAP3K12
TCGA.AA.A01D.01A	12	53878019	53878813	2	-7.5761	LARGE-LOSS	FOCAL	1	MAP3K12
TCGA.AG.A02G.01A	12	53878813	53880194	3	-5.1407	LARGE-LOSS	FOCAL	1	MAP3K12
TCGA.AA.A010.01A	12	54338745	54426865	15	-1.4185	LARGE-LOSS	FOCAL	9	"HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9"
TCGA.AA.A00N.01A	12	54350070	54448597	17	-1.4021	LARGE-LOSS	FOCAL	8	"HOXC10,HOXC11,HOXC12,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9"
TCGA.AA.A010.01A	12	54756394	54778160	7	-2.2485	LARGE-LOSS	FOCAL	2	"GPR84,ZNF385A"
TCGA.AA.A010.01A	12	54784923	54797901	11	-1.3419	LARGE-LOSS	FOCAL	2	"ITGA5,ZNF385A"
TCGA.AA.A01C.01A	12	54793377	54795730	4	-1.6461	LARGE-LOSS	FOCAL	1	ITGA5
TCGA.AG.A01W.01A	12	54886522	54888184	3	-1.3709	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01D.01A	12	56086885	56090030	5	-4.7394	LARGE-LOSS	FOCAL	1	ITGA7
TCGA.AA.A010.01A	12	56119286	56154292	10	-2.0397	LARGE-LOSS	FOCAL	3	"CD63,GDF11,SARNP"
TCGA.AG.A023.01A	12	56213085	56214002	2	-2.51	LARGE-LOSS	FOCAL	1	ORMDL2
TCGA.AA.A00N.01A	12	56330231	56332635	6	-1.4037	LARGE-LOSS	FOCAL	1	DGKA
TCGA.AA.A01K.01A	12	56331702	56332929	4	-4.2302	LARGE-LOSS	FOCAL	1	DGKA
TCGA.AG.A01L.01A	12	56486466	56486774	2	-1.736	LARGE-LOSS	FOCAL	1	ERBB3
TCGA.AA.A00N.01A	12	56500332	56511186	12	-1.6985	LARGE-LOSS	FOCAL	2	"PA2G4,RPL41"
TCGA.AG.3909.01A	12	56500332	56515100	14	-1.3323	LARGE-LOSS	FOCAL	3	"PA2G4,RPL41,ZC3H10"
TCGA.AG.A023.01A	12	56547656	56551193	5	-2.2216	LARGE-LOSS	FOCAL	1	MYL6B
TCGA.AA.A010.01A	12	56561792	56568386	9	-1.3454	LARGE-LOSS	FOCAL	1	SMARCC2
TCGA.AA.A010.01A	12	56571742	56580954	11	-2.5946	LARGE-LOSS	FOCAL	1	SMARCC2
TCGA.AA.A010.01A	12	56583087	56601897	4	-1.6557	LARGE-LOSS	FOCAL	2	"RNF41,SMARCC2"
TCGA.AG.A00H.01A	12	56638399	56639113	2	-4.8434	LARGE-LOSS	FOCAL	1	ANKRD52
TCGA.AA.A01D.01A	12	56704257	56712817	7	-4.8985	LARGE-LOSS	FOCAL	2	"CNPY2,PAN2"
TCGA.AA.A01K.01A	12	56711323	56713354	4	-6.3107	LARGE-LOSS	FOCAL	1	PAN2
TCGA.AA.A010.01A	12	57032058	57037574	6	-1.6878	LARGE-LOSS	FOCAL	1	ATP5B
TCGA.AA.A00N.01A	12	57032058	57038515	7	-1.957	LARGE-LOSS	FOCAL	1	ATP5B
TCGA.CK.5914.01A	12	57032058	57038903	8	-1.3923	LARGE-LOSS	FOCAL	1	ATP5B
TCGA.AG.3909.01A	12	57032058	57058496	10	-1.3441	LARGE-LOSS	FOCAL	2	"ATP5B,PTGES3"
TCGA.A6.3808.01A	12	57033725	57113203	22	-2.1249	LARGE-LOSS	FOCAL	3	"ATP5B,NACA,PTGES3"
TCGA.AG.A00H.01A	12	57081695	57108086	5	-2.7445	LARGE-LOSS	FOCAL	2	"NACA,PTGES3"
TCGA.AA.A00N.01A	12	57125412	57180862	16	-1.4438	LARGE-LOSS	FOCAL	2	"HSD17B6,PRIM1"
TCGA.AA.A010.01A	12	57388944	57409441	8	-2.5782	LARGE-LOSS	FOCAL	3	"GPR182,TAC3,ZBTB39"
TCGA.AA.A010.01A	12	57422487	57424774	6	-1.3403	LARGE-LOSS	FOCAL	1	MYO1A
TCGA.AA.A01Q.01A	12	57570864	57578605	13	-1.4668	LARGE-LOSS	FOCAL	1	LRP1
TCGA.AA.A010.01A	12	57591024	57598843	13	-1.4482	LARGE-LOSS	FOCAL	1	LRP1
TCGA.AA.A010.01A	12	57600267	57623480	13	-2.217	LARGE-LOSS	FOCAL	3	"LRP1,NXPH4,SHMT2"
TCGA.AA.A010.01A	12	57624557	57630741	10	-1.6261	LARGE-LOSS	FOCAL	2	"NDUFA4L2,SHMT2"
TCGA.AA.A010.01A	12	57882338	57883952	4	-1.5343	LARGE-LOSS	FOCAL	1	MARS
TCGA.AA.A00N.01A	12	57882338	57912894	16	-1.8482	LARGE-LOSS	FOCAL	2	"DDIT3,MARS"
TCGA.AA.A010.01A	12	57891908	57897969	4	-2.1849	LARGE-LOSS	FOCAL	1	MARS
TCGA.AG.4009.01A	12	57891908	57918465	14	-1.5722	LARGE-LOSS	FOCAL	3	"DDIT3,MARS,MBD6"
TCGA.AA.A01K.01A	12	57905474	57906485	3	-3.8126	LARGE-LOSS	FOCAL	1	MARS
TCGA.AA.A010.01A	12	57905474	57918465	10	-3.0757	LARGE-LOSS	FOCAL	3	"DDIT3,MARS,MBD6"
TCGA.AA.A010.01A	12	57919080	57929485	15	-2.529	LARGE-LOSS	FOCAL	2	"DCTN2,MBD6"
TCGA.AG.A025.01A	12	57926735	57928048	3	-5.6165	LARGE-LOSS	FOCAL	1	DCTN2
TCGA.AA.A01K.01A	12	57965070	57966332	3	-3.0392	LARGE-LOSS	FOCAL	1	KIF5A
TCGA.AF.3914.01A	12	58002272	58014022	14	-1.4591	LARGE-LOSS	FOCAL	3	"ARHGEF25,DTX3,SLC26A10"
TCGA.AA.A029.01A	12	58008307	58008982	3	-4.9354	LARGE-LOSS	FOCAL	1	ARHGEF25
TCGA.AA.A010.01A	12	58109511	58158112	41	-2.714	LARGE-LOSS	FOCAL	6	"AGAP2,CDK4,CYP27B1,MARCH9,OS9,TSPAN31"
TCGA.AA.A02F.01A	12	58120805	58122044	4	-5.1104	LARGE-LOSS	FOCAL	1	AGAP2
TCGA.AF.3914.01A	12	58123385	58129100	9	-1.6774	LARGE-LOSS	FOCAL	1	AGAP2
TCGA.AF.3914.01A	12	58144402	58152324	5	-1.5309	LARGE-LOSS	FOCAL	2	"CDK4,MARCH9"
TCGA.AA.3941	12	58524913	58531578	5	-2.2883	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	12	58530832	58534767	3	-4.60175	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	12	58537349	58539197	4	-1.36475	LARGE-LOSS	FOCAL	0	None
TCGA.CL.5917	12	62463548	62464172	3	-5.2216	LARGE-LOSS	FOCAL	1	FAM19A2
TCGA.AA.3850	12	62667077	62667726	3	-2.13815	LARGE-LOSS	FOCAL	1	USP15
TCGA.AA.3850	12	63447524	63455303	4	-3.38985	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	12	63962972	64057480	18	-1.7628	LARGE-LOSS	FOCAL	1	DPY19L2
TCGA.AA.A010.01A	12	64803749	64816703	8	-2.5115	LARGE-LOSS	FOCAL	1	XPOT
TCGA.AA.A010.01A	12	64818362	64832971	12	-1.5838	LARGE-LOSS	FOCAL	1	XPOT
TCGA.AA.A02H.01A	12	65138539	65449801	7	-2.036	LARGE-LOSS	FOCAL	3	"GNS,TBC1D30,WIF1"
TCGA.AA.3850	12	65737763	65749031	3	-5.19625	LARGE-LOSS	FOCAL	1	MSRB3
TCGA.A6.3808.01A	12	66221737	66546004	12	-1.5078	LARGE-LOSS	FOCAL	4	"HMGA2,LLPH,LOC100129940,TMBIM4"
TCGA.AA.A010.01A	12	66597474	66641448	10	-1.9546	LARGE-LOSS	FOCAL	1	IRAK3
TCGA.AA.3989	12	67692917	67705186	3	-1.5143	LARGE-LOSS	FOCAL	1	CAND1
TCGA.AA.A010.01A	12	68042842	68055081	6	-2.2016	LARGE-LOSS	FOCAL	1	DYRK2
TCGA.AA.A00N.01A	12	70133552	70209089	10	-1.8408	LARGE-LOSS	FOCAL	1	RAB3IP
TCGA.AA.3850	12	70670191	70671767	3	-4.45925	LARGE-LOSS	FOCAL	1	CNOT2
TCGA.AA.3850	12	71347614	71348917	5	-6.53345	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56K	12	71789501	71793190	3	-1.4594	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	12	72148858	72167694	4	-1.6153	LARGE-LOSS	FOCAL	1	RAB21
TCGA.AA.3850	12	73016347	73078394	17	-4.46125	LARGE-LOSS	FOCAL	1	TRHDE
TCGA.AA.3850	12	73603757	73676816	15	-2.60245	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	12	73719760	73726515	3	-7.9001	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	12	75158611	75163071	10	-5.10855	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6532	12	77627444	77631244	3	-5.165	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	12	79216234	79222920	5	-1.6426	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	80707249	80717472	5	-1.478	LARGE-LOSS	FOCAL	1	OTOGL
TCGA.AA.A010.01A	12	80707249	80726714	8	-1.3498	LARGE-LOSS	FOCAL	1	OTOGL
TCGA.AA.3844	12	82451847	82453825	3	-2.2291	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A00H.01A	12	82750692	82752328	3	-3.8692	LARGE-LOSS	FOCAL	2	"CCDC59,METTL25"
TCGA.A6.2677	12	83168112	83191336	16	-4.52	LARGE-LOSS	FOCAL	1	TMTC2
TCGA.AA.3989	12	83846843	83856753	7	-1.5309	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	12	83846843	83857773	10	-1.3288	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	12	83846843	83871686	17	-2.3981	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	12	83846843	83873870	20	-2.0078	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	12	83846843	83873870	20	-3.4911	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	83846843	83885507	23	-3.6989	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	12	83856695	83857773	5	-3.8274	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	12	83856753	83857773	4	-4.6032	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3955	12	83857300	83857773	3	-7.3701	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	12	83857300	83857773	3	-4.9493	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	85741609	85747906	3	-8.8984	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	85749312	85749415	3	-2.4152	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A03F	12	85749397	85754639	3	-4.659	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	86027759	86040247	6	-2.2601	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	87473946	87487946	6	-7.0235	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	88000048	88007336	3	-7.522	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	88219046	88228598	7	-2.0644	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	88360182	88362391	4	-7.7132	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	88433918	88448072	10	-1.453	LARGE-LOSS	FOCAL	2	"C12orf29,CEP290"
TCGA.AA.A00N.01A	12	89885665	89918843	4	-1.7612	LARGE-LOSS	FOCAL	3	"GALNT4,POC1B,POC1B-GALNT4"
TCGA.AG.3909.01A	12	89890899	89918843	3	-1.5237	LARGE-LOSS	FOCAL	3	"GALNT4,POC1B,POC1B-GALNT4"
TCGA.AA.3941	12	91442314	91475044	22	-2.1614	LARGE-LOSS	FOCAL	1	KERA
TCGA.AA.3844	12	91445487	91447522	3	-1.4225	LARGE-LOSS	FOCAL	1	KERA
TCGA.AA.3844	12	91460846	91475044	6	-1.444	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	91593036	91598662	3	-6.9169	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	91630006	91648783	12	-1.9729	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	96288760	96370151	17	-1.5284	LARGE-LOSS	FOCAL	3	"AMDHD1,CCDC38,HAL"
TCGA.AA.A01I.01A	12	96412532	96412903	2	-3.4249	LARGE-LOSS	FOCAL	1	LTA4H
TCGA.AG.A00H.01A	12	96412532	96412903	2	-4.1299	LARGE-LOSS	FOCAL	1	LTA4H
TCGA.AA.A00N.01A	12	99042096	99065281	10	-1.762	LARGE-LOSS	FOCAL	1	APAF1
TCGA.AA.A00N.01A	12	100583594	100708238	23	-1.3485	LARGE-LOSS	FOCAL	3	"ACTR6,DEPDC4,SCYL2"
TCGA.AA.A00N.01A	12	101587356	101598214	4	-1.4387	LARGE-LOSS	FOCAL	1	SLC5A8
TCGA.AA.A010.01A	12	102067154	102122631	16	-1.8355	LARGE-LOSS	FOCAL	3	"CHPT1,MYBPC1,SYCP3"
TCGA.A6.3808.01A	12	104326028	104378486	22	-1.3247	LARGE-LOSS	FOCAL	3	"C12orf73,HSP90B1,TDG"
TCGA.AA.A010.01A	12	104513430	104529127	7	-2.7167	LARGE-LOSS	FOCAL	1	NFYB
TCGA.CK.5914.01A	12	104697664	104725265	12	-1.4023	LARGE-LOSS	FOCAL	2	"EID3,TXNRD1"
TCGA.AA.A00N.01A	12	104697664	104727961	13	-2.0218	LARGE-LOSS	FOCAL	2	"EID3,TXNRD1"
TCGA.AA.3941	12	106296763	106308160	10	-1.7983	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	12	106307687	106308160	3	-1.3434	LARGE-LOSS	FOCAL	0	None
TCGA.RU.A8FL	12	107820242	107838391	4	-1.3992	LARGE-LOSS	FOCAL	1	BTBD11
TCGA.AA.A010.01A	12	108127950	108169986	13	-2.3629	LARGE-LOSS	FOCAL	2	"ASCL4,PRDM4"
TCGA.A6.5665	12	108699031	108719666	17	-2.3717	LARGE-LOSS	FOCAL	1	CMKLR1
TCGA.AG.A01J.01A	12	109198795	109200022	2	-5.2701	LARGE-LOSS	FOCAL	1	SSH1
TCGA.AA.A00N.01A	12	109494450	109495682	2	-1.3945	LARGE-LOSS	FOCAL	1	USP30
TCGA.AA.A00N.01A	12	109536941	109547607	5	-1.7802	LARGE-LOSS	FOCAL	1	UNG
TCGA.AG.3909.01A	12	109539660	109547607	4	-1.5495	LARGE-LOSS	FOCAL	1	UNG
TCGA.AA.A00N.01A	12	110421126	110429383	4	-1.4074	LARGE-LOSS	FOCAL	1	GIT2
TCGA.AA.A010.01A	12	110565154	110584734	9	-2.1219	LARGE-LOSS	FOCAL	1	IFT81
TCGA.AA.A00N.01A	12	110565154	110618200	11	-1.3696	LARGE-LOSS	FOCAL	1	IFT81
TCGA.A6.3808.01A	12	110565154	110655854	17	-1.9256	LARGE-LOSS	FOCAL	1	IFT81
TCGA.AA.A010.01A	12	110719547	110734363	4	-1.9526	LARGE-LOSS	FOCAL	1	ATP2A2
TCGA.AA.3941	12	113156422	113158837	3	-1.4298	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02W.01A	12	113645232	113664506	2	-6.3911	LARGE-LOSS	FOCAL	2	"IQCD,TPCN1"
TCGA.DM.A1D7	12	113960794	113961025	3	-2.1191	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6166	12	114615844	114616204	3	-4.7403	LARGE-LOSS	FOCAL	0	None
TCGA.G5.6572	12	114615844	114616204	3	-4.8883	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	114823225	115118633	13	-1.6458	LARGE-LOSS	FOCAL	2	"TBX3,TBX5"
TCGA.AG.3909.01A	12	114832519	115120600	13	-1.3711	LARGE-LOSS	FOCAL	2	"TBX3,TBX5"
TCGA.AA.3850	12	115729037	115730922	4	-1.46115	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	115729037	115730922	4	-1.5342	LARGE-LOSS	FOCAL	0	None
TCGA.SS.A7HO	12	116109031	116109899	3	-1.6581	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	12	116162119	116166628	4	-1.6196	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	12	116162119	116166628	4	-2.1812	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	12	116162481	116166628	3	-2.7811	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	12	116162481	116166628	3	-4.7414	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1DA	12	116311901	116313714	3	-6.6212	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	12	116548548	116561164	4	-4.76515	LARGE-LOSS	FOCAL	1	MED13L
TCGA.AA.A010.01A	12	117603252	117653021	10	-2.0819	LARGE-LOSS	FOCAL	2	"FBXO21,NOS1"
TCGA.AA.A010.01A	12	118490076	118519882	8	-2.1078	LARGE-LOSS	FOCAL	2	"VSIG10,WSB2"
TCGA.A6.3808.01A	12	118817902	118828884	5	-2.3237	LARGE-LOSS	FOCAL	1	SUDS3
TCGA.AA.3941	12	119331966	119332930	3	-3.4973	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	12	119331966	119333413	4	-2.1987	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	12	119331966	119333413	4	-2.2977	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A015.01A	12	120149954	120150349	2	-2.1419	LARGE-LOSS	FOCAL	1	CIT
TCGA.AA.A010.01A	12	120546175	120569682	6	-1.8637	LARGE-LOSS	FOCAL	2	"GCN1L1,RAB35"
TCGA.AA.A00O.01A	12	120599244	120599656	2	-5.8774	LARGE-LOSS	FOCAL	1	GCN1L1
TCGA.AA.A010.01A	12	120785192	120805797	9	-1.8979	LARGE-LOSS	FOCAL	1	MSI1
TCGA.AA.A010.01A	12	120894837	120903383	5	-1.3869	LARGE-LOSS	FOCAL	2	"GATC,SRSF9"
TCGA.AA.A00N.01A	12	121131852	121157673	6	-2.0221	LARGE-LOSS	FOCAL	2	"MLEC,UNC119B"
TCGA.AG.3909.01A	12	121131852	121164801	7	-1.4348	LARGE-LOSS	FOCAL	3	"ACADS,MLEC,UNC119B"
TCGA.AG.4009.01A	12	121131852	121164801	7	-1.501	LARGE-LOSS	FOCAL	3	"ACADS,MLEC,UNC119B"
TCGA.AG.4015	12	121172265	121177750	3	-1.6468	LARGE-LOSS	FOCAL	1	ACADS
TCGA.AA.A010.01A	12	122242677	122247467	5	-2.6892	LARGE-LOSS	FOCAL	1	SETD1B
TCGA.AG.A00H.01A	12	122286847	122294175	4	-3.5902	LARGE-LOSS	FOCAL	1	HPD
TCGA.AA.A010.01A	12	122404849	122516709	14	-1.3957	LARGE-LOSS	FOCAL	3	"BCL7A,MLXIP,WDR66"
TCGA.AG.A00H.01A	12	123068777	123070131	3	-3.9757	LARGE-LOSS	FOCAL	1	KNTC1
TCGA.AA.A00N.01A	12	123071180	123078806	6	-1.9014	LARGE-LOSS	FOCAL	1	KNTC1
TCGA.AA.A00N.01A	12	123641327	123649801	7	-1.5392	LARGE-LOSS	FOCAL	1	MPHOSPH9
TCGA.AA.A010.01A	12	123641327	123651165	8	-2.5081	LARGE-LOSS	FOCAL	1	MPHOSPH9
TCGA.AA.A00N.01A	12	123705867	123749705	5	-1.4842	LARGE-LOSS	FOCAL	3	"C12orf65,CDK2AP1,MPHOSPH9"
TCGA.AA.A010.01A	12	123738194	123751680	5	-2.3787	LARGE-LOSS	FOCAL	2	"C12orf65,CDK2AP1"
TCGA.AA.A010.01A	12	123868664	123900364	9	-2.1057	LARGE-LOSS	FOCAL	2	"RILPL2,SETD8"
TCGA.AA.A00N.01A	12	123875128	123907539	8	-1.8096	LARGE-LOSS	FOCAL	2	"RILPL2,SETD8"
TCGA.AA.A01I.01A	12	124155727	124156543	3	-4.4492	LARGE-LOSS	FOCAL	1	TCTN2
TCGA.RU.A8FL	12	125242949	125246705	3	-1.4175	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02R.01A	12	125451291	125451620	2	-5.4506	LARGE-LOSS	FOCAL	1	DHX37
TCGA.AG.A00H.01A	12	125587175	125587487	2	-5.3552	LARGE-LOSS	FOCAL	1	AACS
TCGA.AD.6965	12	129231075	129232296	4	-5.8591	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6704	12	129231312	129232296	3	-2.2111	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	12	129278689	129360422	9	-1.6305	LARGE-LOSS	FOCAL	2	"GLT1D1,SLC15A4"
TCGA.EI.6509	12	129334853	129343927	3	-1.6243	LARGE-LOSS	FOCAL	1	GLT1D1
TCGA.AA.3968	12	130145406	130146776	3	-1.7063	LARGE-LOSS	FOCAL	1	TMEM132D
TCGA.AA.A00N.01A	12	130387748	130834364	10	-1.3855	LARGE-LOSS	FOCAL	3	"FZD10,PIWIL1,TMEM132D"
TCGA.AG.4009.01A	12	130647470	130830875	5	-1.3264	LARGE-LOSS	FOCAL	2	"FZD10,PIWIL1"
TCGA.A6.2672	12	131202550	131236514	23	-4.1744	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	131276387	131311689	9	-1.9511	LARGE-LOSS	FOCAL	1	STX2
TCGA.AG.3909.01A	12	131276387	131360119	12	-1.7734	LARGE-LOSS	FOCAL	2	"RAN,STX2"
TCGA.CK.5914.01A	12	131276387	131360119	13	-1.6314	LARGE-LOSS	FOCAL	2	"RAN,STX2"
TCGA.AG.4009.01A	12	131311689	131360119	4	-1.5809	LARGE-LOSS	FOCAL	2	"RAN,STX2"
TCGA.A6.6653	12	131751768	131767699	4	-3.0189	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	12	132905514	133218181	31	-1.8241	LARGE-LOSS	FOCAL	5	"FBRSL1,GALNT9,LRCOL1,P2RX2,POLE"
TCGA.AA.A010.01A	12	133252276	133358834	36	-1.7522	LARGE-LOSS	FOCAL	5	"ANKLE2,GOLGA3,PGAM5,POLE,PXMP2"
TCGA.A6.3808.01A	12	133291394	133306246	7	-3.0332	LARGE-LOSS	FOCAL	2	"ANKLE2,PGAM5"
TCGA.AA.A010.01A	12	133446165	133454089	4	-1.3587	LARGE-LOSS	FOCAL	1	CHFR
TCGA.AA.3530	13	19212261	19254915	6	-2.2222	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	19907870	19911440	6	-3.41255	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01N.01A	13	20244334	20245914	3	-3.7081	LARGE-LOSS	FOCAL	1	MPHOSPH8
TCGA.AA.A010.01A	13	21245075	21265146	3	-2.0402	LARGE-LOSS	FOCAL	1	IFT88
TCGA.AA.A010.01A	13	21548962	21619802	8	-1.7498	LARGE-LOSS	FOCAL	1	LATS2
TCGA.AA.A00N.01A	13	21720937	21753139	14	-1.4562	LARGE-LOSS	FOCAL	3	"MRPL57,SAP18,SKA3"
TCGA.AA.3982	13	22318441	22320177	6	-1.395	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	13	22319428	22320177	4	-1.3528	LARGE-LOSS	FOCAL	0	None
TCGA.QG.A5YX	13	22655530	22661289	3	-6.4822	LARGE-LOSS	FOCAL	0	None
TCGA.CM.4752	13	24524625	24527454	3	-1.6339	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	25073413	25259384	6	-1.9769	LARGE-LOSS	FOCAL	2	"ATP12A,PARP4"
TCGA.AA.A00N.01A	13	25459680	25672705	12	-1.5912	LARGE-LOSS	FOCAL	2	"CENPJ,PABPC3"
TCGA.AA.3833	13	25978572	25979655	3	-1.5617	LARGE-LOSS	FOCAL	1	ATP8A2
TCGA.AG.3612	13	25978572	25979655	3	-4.5693	LARGE-LOSS	FOCAL	1	ATP8A2
TCGA.AA.A00N.01A	13	27332913	27333928	3	-1.4852	LARGE-LOSS	FOCAL	1	GPR12
TCGA.AA.A010.01A	13	27332913	27333928	3	-3.1159	LARGE-LOSS	FOCAL	1	GPR12
TCGA.AA.A00N.01A	13	27827849	28014084	17	-1.3311	LARGE-LOSS	FOCAL	4	"GTF3A,MTIF3,RASL11A,RPL21"
TCGA.AA.A00N.01A	13	29236515	29291907	12	-1.4762	LARGE-LOSS	FOCAL	2	"POMP,SLC46A3"
TCGA.AA.3864	13	30344935	30346187	3	-1.5428	LARGE-LOSS	FOCAL	1	UBL3
TCGA.AA.3982	13	30344935	30346187	3	-2.3952	LARGE-LOSS	FOCAL	1	UBL3
TCGA.AA.A00N.01A	13	30829584	31211854	11	-1.4473	LARGE-LOSS	FOCAL	3	"HMGB1,KATNAL1,USPL1"
TCGA.AA.A010.01A	13	31035726	31037619	4	-2.6451	LARGE-LOSS	FOCAL	1	HMGB1
TCGA.AA.3811	13	33853490	33856354	3	-2.0553	LARGE-LOSS	FOCAL	1	STARD13
TCGA.AA.3833	13	34317470	34318283	4	-1.5048	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	13	34852253	34863719	8	-1.3891	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3815.01A	13	35691536	35692360	2	-1.5641	LARGE-LOSS	FOCAL	1	NBEA
TCGA.AA.3845	13	35731963	35748754	3	-4.0793	LARGE-LOSS	FOCAL	1	NBEA
TCGA.AA.3941	13	35937454	35939157	7	-2.005	LARGE-LOSS	FOCAL	1	NBEA
TCGA.AA.A00N.01A	13	36046540	36050714	4	-1.4844	LARGE-LOSS	FOCAL	2	"MAB21L1,NBEA"
TCGA.AA.A00N.01A	13	37011717	37016680	7	-1.5072	LARGE-LOSS	FOCAL	1	CCNA1
TCGA.AA.A00N.01A	13	37559712	37586302	18	-1.4347	LARGE-LOSS	FOCAL	3	"ALG5,EXOSC8,SUPT20H"
TCGA.AA.A00N.01A	13	37621628	37678338	5	-1.5375	LARGE-LOSS	FOCAL	2	"CSNK1A1L,SUPT20H"
TCGA.AA.3864	13	37858888	37864797	4	-1.6293	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	13	37858999	37863208	3	-4.7501	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	13	37858999	37864917	5	-3.5867	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	13	37862440	37864797	3	-2.8986	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	13	38360727	38362668	4	-2.4859	LARGE-LOSS	FOCAL	1	TRPC4
TCGA.AA.A00N.01A	13	39596409	39621773	16	-1.6332	LARGE-LOSS	FOCAL	2	"NHLRC3,PROSER1"
TCGA.AA.A010.01A	13	41515040	41556057	7	-1.3511	LARGE-LOSS	FOCAL	1	ELF1
TCGA.AA.A00N.01A	13	42040919	42149825	6	-1.6678	LARGE-LOSS	FOCAL	2	"RGCC,VWA8"
TCGA.AA.A00N.01A	13	42442431	42524024	9	-1.8677	LARGE-LOSS	FOCAL	1	VWA8
TCGA.A6.2681	13	42909412	42911954	3	-1.4655	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	44442782	45149837	17	-1.4545	LARGE-LOSS	FOCAL	5	"CCDC122,LACC1,SERP2,SMIM2,TSC22D1"
TCGA.AA.3850	13	44443722	44448131	8	-2.01925	LARGE-LOSS	FOCAL	1	CCDC122
TCGA.AA.3848	13	45469258	45474872	3	-1.3416	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	45911456	46077329	32	-1.6371	LARGE-LOSS	FOCAL	3	"COG3,SLC25A30,TPT1"
TCGA.AA.A010.01A	13	46050299	46077329	13	-1.4109	LARGE-LOSS	FOCAL	1	COG3
TCGA.AA.A00N.01A	13	46725024	46787111	8	-1.5099	LARGE-LOSS	FOCAL	2	"LCP1,LRRC63"
TCGA.F5.6814	13	48453145	48466757	3	-1.8002	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6675	13	48942813	49223858	82	-5.6846	LARGE-LOSS	FOCAL	3	"LPAR6,RB1,RCBTB2"
TCGA.AA.A010.01A	13	49770962	49781216	5	-1.3955	LARGE-LOSS	FOCAL	1	FNDC3A
TCGA.AA.A02J.01A	13	49794432	49796146	2	-6.7755	LARGE-LOSS	FOCAL	1	MLNR
TCGA.AA.A00N.01A	13	50056833	50087147	8	-1.8032	LARGE-LOSS	FOCAL	2	"PHF11,SETDB2"
TCGA.AA.A010.01A	13	50275560	50285019	7	-1.6162	LARGE-LOSS	FOCAL	1	KPNA3
TCGA.AA.A010.01A	13	52004394	52026504	4	-2.1956	LARGE-LOSS	FOCAL	1	INTS6
TCGA.AA.3850	13	53665073	53665293	3	-2.67215	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	13	56698566	56777986	28	-2.0367	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	56774664	56777752	7	-6.96425	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	58431833	58433468	3	-7.86565	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	58442754	58518220	15	-1.59145	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	58532882	58541849	3	-9.88765	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	13	60145525	60149101	3	-1.8362	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	13	63382675	63383550	3	-8.0714	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3549	13	64224948	64234561	3	-7.0588	LARGE-LOSS	FOCAL	0	None
TCGA.WS.AB45	13	64451191	64451620	3	-2.6831	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3950	13	64980031	64980396	3	-2.1485	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	13	68125619	68149577	13	-3.1096	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	13	68132132	68145603	8	-4.5165	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A280	13	69248298	69260034	3	-1.5345	LARGE-LOSS	FOCAL	0	None
TCGA.A6.4105	13	72953896	72954053	3	-1.3766	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	13	74603914	74605073	3	-1.5389	LARGE-LOSS	FOCAL	1	KLF12
TCGA.AA.3850	13	76610839	76656755	18	-2.57585	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	77569146	77595626	7	-1.959	LARGE-LOSS	FOCAL	2	"CLN5,FBXL3"
TCGA.AA.A010.01A	13	77574576	77619466	6	-1.5255	LARGE-LOSS	FOCAL	3	"CLN5,FBXL3,MYCBP2"
TCGA.AA.A010.01A	13	79175498	79189703	3	-2.327	LARGE-LOSS	FOCAL	2	"POU4F1,RNF219"
TCGA.AA.3870	13	82080433	82081286	3	-1.3733	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3896	13	83947270	83951768	3	-1.8175	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	96577881	96601538	7	-1.8876	LARGE-LOSS	FOCAL	1	UGGT2
TCGA.AA.A010.01A	13	98086763	98649732	11	-2.136	LARGE-LOSS	FOCAL	2	"IPO5,RAP2A"
TCGA.G4.6311	13	98530123	98530795	5	-1.5454	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6881	13	100384765	100385359	3	-1.8355	LARGE-LOSS	FOCAL	1	CLYBL
TCGA.AA.A010.01A	13	100517020	100637590	12	-1.5502	LARGE-LOSS	FOCAL	3	"CLYBL,ZIC2,ZIC5"
TCGA.AA.A00N.01A	13	101167654	101277831	10	-1.4305	LARGE-LOSS	FOCAL	3	"GGACT,PCCA,TMTC4"
TCGA.AA.A010.01A	13	101308577	101322525	5	-2.3001	LARGE-LOSS	FOCAL	1	TMTC4
TCGA.AA.3850	13	102090036	102098106	6	-1.83405	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	102441668	102511525	30	-1.39795	LARGE-LOSS	FOCAL	1	FGF14
TCGA.AA.3844	13	102492486	102493917	3	-1.6659	LARGE-LOSS	FOCAL	1	FGF14
TCGA.AA.3977	13	102492486	102493917	3	-1.5866	LARGE-LOSS	FOCAL	1	FGF14
TCGA.AA.3982	13	102662453	102664104	5	-2.1295	LARGE-LOSS	FOCAL	1	FGF14
TCGA.DY.A1DG	13	103378853	103387545	3	-4.1934	LARGE-LOSS	FOCAL	1	CCDC168
TCGA.AG.A023.01A	13	103381840	103410714	11	-1.3487	LARGE-LOSS	FOCAL	1	CCDC168
TCGA.AA.3850	13	103386495	103394002	3	-4.00665	LARGE-LOSS	FOCAL	1	CCDC168
TCGA.AA.3941	13	103386495	103400082	7	-1.5225	LARGE-LOSS	FOCAL	1	CCDC168
TCGA.AA.3982	13	103394002	103400082	5	-1.9061	LARGE-LOSS	FOCAL	1	CCDC168
TCGA.AA.A00N.01A	13	103410714	103459650	17	-2.0025	LARGE-LOSS	FOCAL	5	"BIVM,BIVM-ERCC5,CCDC168,KDELC1,TEX30"
TCGA.AA.3977	13	105806799	105807582	7	-1.9757	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	13	105807022	105807582	5	-4.3553	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D4	13	106022721	106026554	3	-1.5733	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	13	106450463	106458802	5	-1.3599	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	13	107164883	108518001	10	-1.4538	LARGE-LOSS	FOCAL	3	"ARGLU1,EFNB2,FAM155A"
TCGA.AA.3850	13	108317702	108321308	3	-2.19045	LARGE-LOSS	FOCAL	1	FAM155A
TCGA.AA.3941	13	108611885	108626930	9	-1.3505	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	108613531	108614303	4	-5.80495	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	108615959	108630284	4	-2.05825	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	13	109472600	109475609	5	-2.00675	LARGE-LOSS	FOCAL	1	MYO16
TCGA.AA.3941	13	109472932	109478591	5	-1.5539	LARGE-LOSS	FOCAL	1	MYO16
TCGA.AA.3850	13	109890889	109895644	4	-1.81955	LARGE-LOSS	FOCAL	0	None
TCGA.DC.5869	13	110338912	110341833	3	-3.768	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	13	110408554	110802659	5	-1.6232	LARGE-LOSS	FOCAL	2	"COL4A1,IRS2"
TCGA.AY.6196	13	110673613	110675197	3	-4.7953	LARGE-LOSS	FOCAL	0	None
TCGA.EI.7004	13	110673613	110675197	3	-1.4417	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6299	13	110673613	110675197	3	-4.4307	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A28K	13	110673613	110680943	7	-3.0335	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	13	111155446	111160234	3	-2.2225	LARGE-LOSS	FOCAL	1	COL4A2
TCGA.AA.A010.01A	13	111340046	111767863	16	-1.3256	LARGE-LOSS	FOCAL	4	"ANKRD10,ARHGEF7,CARS2,ING1"
TCGA.AG.A025.01A	13	111953068	111953761	2	-5.6241	LARGE-LOSS	FOCAL	1	ARHGEF7
TCGA.AA.A00N.01A	13	112324663	112725514	5	-1.8696	LARGE-LOSS	FOCAL	1	SOX1
TCGA.EI.6508	13	112505754	112562250	24	-4.1307	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	13	112721932	112725514	4	-2.8814	LARGE-LOSS	FOCAL	1	SOX1
TCGA.AG.A01J.01A	13	113464911	113470347	2	-6.4675	LARGE-LOSS	FOCAL	1	ATP11A
TCGA.AA.A010.01A	13	113792682	113815173	11	-2.1129	LARGE-LOSS	FOCAL	2	"F10,PROZ"
TCGA.AA.A010.01A	13	113817272	113839738	11	-1.4759	LARGE-LOSS	FOCAL	2	"PCID2,PROZ"
TCGA.AA.A010.01A	13	113845137	113882228	11	-2.3176	LARGE-LOSS	FOCAL	2	"CUL4A,PCID2"
TCGA.AA.A02E.01A	13	113862253	113862844	2	-4.8964	LARGE-LOSS	FOCAL	2	"CUL4A,PCID2"
TCGA.AG.A00H.01A	13	113960752	113976566	7	-3.0335	LARGE-LOSS	FOCAL	1	LAMP1
TCGA.AA.A00N.01A	13	114112306	114265248	20	-1.4605	LARGE-LOSS	FOCAL	3	"DCUN1D2,TFDP1,TMCO3"
TCGA.AG.4009.01A	14	19377557	19574139	5	-1.4415	LARGE-LOSS	FOCAL	2	"OR11H12,POTEG"
TCGA.A6.3808.01A	14	19377557	20019687	7	-2.1396	LARGE-LOSS	FOCAL	3	"OR11H12,POTEG,POTEM"
TCGA.AA.A010.01A	14	19377557	20020161	8	-2.5317	LARGE-LOSS	FOCAL	3	"OR11H12,POTEG,POTEM"
TCGA.AA.3695	14	20224002	20232625	3	-4.0167	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3688	14	20224002	20332570	8	-4.6703	LARGE-LOSS	FOCAL	2	"OR4M1,OR4N2"
TCGA.AA.3489	14	20224002	20332796	9	-1.415	LARGE-LOSS	FOCAL	2	"OR4M1,OR4N2"
TCGA.AA.3814	14	20224002	20348471	10	-3.4815	LARGE-LOSS	FOCAL	3	"OR4K2,OR4M1,OR4N2"
TCGA.AA.3947	14	20224002	20348471	10	-2.1709	LARGE-LOSS	FOCAL	3	"OR4K2,OR4M1,OR4N2"
TCGA.AA.3811	14	20224002	20389720	12	-2.1287	LARGE-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AG.A026	14	20224002	20424925	16	-2.1192	LARGE-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AG.A01N.01A	14	20813040	20815001	3	-2.1759	LARGE-LOSS	FOCAL	1	PARP2
TCGA.AA.A01K.01A	14	20845390	20848042	5	-3.4155	LARGE-LOSS	FOCAL	1	TEP1
TCGA.AG.3909.01A	14	20915317	20940439	15	-1.3886	LARGE-LOSS	FOCAL	4	"APEX1,OSGEP,PNP,TMEM55B"
TCGA.AA.A02E.01A	14	20924776	20926696	2	-4.8136	LARGE-LOSS	FOCAL	2	"APEX1,TMEM55B"
TCGA.AA.3667	14	21036283	21126037	52	-3.921	LARGE-LOSS	FOCAL	3	"OR6S1,RNASE11,RNASE12"
TCGA.AA.A010.01A	14	21511130	21560768	26	-1.5292	LARGE-LOSS	FOCAL	5	"ARHGEF40,NDRG2,RNASE7,RNASE8,ZNF219"
TCGA.AG.A02G.01A	14	21555123	21556939	4	-2.7863	LARGE-LOSS	FOCAL	1	ARHGEF40
TCGA.AA.A010.01A	14	21561650	21571246	5	-2.814	LARGE-LOSS	FOCAL	2	"TMEM253,ZNF219"
TCGA.A6.5657	14	21691476	21692683	3	-1.3847	LARGE-LOSS	FOCAL	1	HNRNPC
TCGA.AA.A02H.01A	14	21779952	21780528	2	-2.4896	LARGE-LOSS	FOCAL	1	RPGRIP1
TCGA.AG.A02G.01A	14	21865935	21867720	2	-3.6249	LARGE-LOSS	FOCAL	1	CHD8
TCGA.AA.3982	14	22343129	22368996	15	-1.3265	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DD	14	22794294	22795173	4	-5.6894	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3667	14	23095545	23099129	3	-5.6885	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56L	14	23095545	23099129	3	-1.6069	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01N.01A	14	23245021	23245363	2	-3.0898	LARGE-LOSS	FOCAL	1	SLC7A7
TCGA.AA.A02H.01A	14	23302561	23312887	7	-1.8254	LARGE-LOSS	FOCAL	2	"MMP14,MRPL52"
TCGA.AG.A01N.01A	14	23354413	23355183	2	-5.0911	LARGE-LOSS	FOCAL	1	REM2
TCGA.AA.A01K.01A	14	23373451	23375367	4	-4.6456	LARGE-LOSS	FOCAL	1	RBM23
TCGA.AA.A01I.01A	14	23391336	23392218	4	-4.078	LARGE-LOSS	FOCAL	1	PRMT5
TCGA.AA.A02E.01A	14	23391336	23392218	4	-4.9492	LARGE-LOSS	FOCAL	1	PRMT5
TCGA.AG.A023.01A	14	23391336	23392218	4	-2.8325	LARGE-LOSS	FOCAL	1	PRMT5
TCGA.AA.A010.01A	14	23495251	23517137	6	-1.8412	LARGE-LOSS	FOCAL	3	"CDH24,PSMB11,PSMB5"
TCGA.AA.A010.01A	14	23518187	23540606	20	-2.4574	LARGE-LOSS	FOCAL	2	"ACIN1,CDH24"
TCGA.AF.3914.01A	14	23521150	23535099	15	-1.331	LARGE-LOSS	FOCAL	2	"ACIN1,CDH24"
TCGA.AA.A00N.01A	14	23531340	23569466	22	-1.4248	LARGE-LOSS	FOCAL	2	"ACIN1,C14orf119"
TCGA.AA.A01K.01A	14	23532107	23532604	2	-4.7072	LARGE-LOSS	FOCAL	1	ACIN1
TCGA.AA.A010.01A	14	23547328	23550901	5	-1.6347	LARGE-LOSS	FOCAL	1	ACIN1
TCGA.AG.4009.01A	14	23776935	23794379	7	-1.8033	LARGE-LOSS	FOCAL	3	"BCL2L2,BCL2L2-PABPN1,PABPN1"
TCGA.AA.A00N.01A	14	23791358	23794379	5	-2.0194	LARGE-LOSS	FOCAL	2	"BCL2L2-PABPN1,PABPN1"
TCGA.AA.A010.01A	14	23791358	23794379	5	-2.5807	LARGE-LOSS	FOCAL	2	"BCL2L2-PABPN1,PABPN1"
TCGA.CK.5914.01A	14	23791358	23794379	5	-1.4557	LARGE-LOSS	FOCAL	2	"BCL2L2-PABPN1,PABPN1"
TCGA.AG.A02G.01A	14	23792142	23793128	3	-3.2661	LARGE-LOSS	FOCAL	2	"BCL2L2-PABPN1,PABPN1"
TCGA.AA.A00N.01A	14	23861716	23862509	3	-1.8222	LARGE-LOSS	FOCAL	1	MYH6
TCGA.AA.A02H.01A	14	23888349	23889035	3	-3.6771	LARGE-LOSS	FOCAL	1	MYH7
TCGA.AG.A02G.01A	14	23938832	23939190	2	-6.1192	LARGE-LOSS	FOCAL	1	NGDN
TCGA.A6.2686	14	24127063	24128714	3	-1.4281	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	24429072	24520015	21	-1.5792	LARGE-LOSS	FOCAL	3	"DHRS4,DHRS4L1,DHRS4L2"
TCGA.A6.6142	14	24429297	24484458	3	-5.8313	LARGE-LOSS	FOCAL	3	"DHRS4,DHRS4L1,DHRS4L2"
TCGA.AA.3492	14	24429297	24484458	3	-4.1928	LARGE-LOSS	FOCAL	3	"DHRS4,DHRS4L1,DHRS4L2"
TCGA.AA.3667	14	24429297	24484458	3	-8.0863	LARGE-LOSS	FOCAL	3	"DHRS4,DHRS4L1,DHRS4L2"
TCGA.D5.6924	14	24429297	24484458	3	-4.8162	LARGE-LOSS	FOCAL	3	"DHRS4,DHRS4L1,DHRS4L2"
TCGA.AG.3909.01A	14	24606109	24615344	11	-1.7927	LARGE-LOSS	FOCAL	3	"EMC9,PSME1,PSME2"
TCGA.AA.A00N.01A	14	24606109	24619332	17	-1.5	LARGE-LOSS	FOCAL	4	"EMC9,PSME1,PSME2,RNF31"
TCGA.AG.3909.01A	14	24658629	24663830	5	-1.3451	LARGE-LOSS	FOCAL	1	TM9SF1
TCGA.AA.A00N.01A	14	24805329	24807660	6	-1.3948	LARGE-LOSS	FOCAL	1	RIPK3
TCGA.A6.6648	14	25271174	25271814	3	-1.649	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	27064567	29261049	7	-1.496	LARGE-LOSS	FOCAL	2	"FOXG1,NOVA1"
TCGA.AA.3524	14	27808930	27867785	24	-2.5628	LARGE-LOSS	FOCAL	0	None
TCGA.QL.A97D	14	28664564	28670331	3	-4.9906	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	14	29236455	29242540	4	-2.7155	LARGE-LOSS	FOCAL	1	FOXG1
TCGA.AA.3811	14	30700614	30701535	3	-3.7836	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	30700614	30701535	3	-3.2235	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	32341905	32343960	4	-2.2943	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	14	32341905	32344076	5	-2.2618	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3986	14	32415175	32416503	3	-4.0175	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6901	14	33288839	33297397	3	-4.4068	LARGE-LOSS	FOCAL	1	AKAP6
TCGA.AA.3844	14	33623751	33624839	3	-5.6761	LARGE-LOSS	FOCAL	1	NPAS3
TCGA.AA.3982	14	33623751	33624839	3	-7.2946	LARGE-LOSS	FOCAL	1	NPAS3
TCGA.AA.A02E.01A	14	34985528	35182537	18	-1.3532	LARGE-LOSS	FOCAL	3	"CFL2,EAPP,SNX6"
TCGA.AA.A010.01A	14	35483931	35522433	8	-1.4846	LARGE-LOSS	FOCAL	2	"FAM177A1,SRP54"
TCGA.AA.3941	14	36780772	36786342	4	-1.4996	LARGE-LOSS	FOCAL	1	MBIP
TCGA.AA.3941	14	37488187	37489007	3	-1.3429	LARGE-LOSS	FOCAL	1	SLC25A21
TCGA.AA.3941	14	37490516	37490874	3	-7.0564	LARGE-LOSS	FOCAL	1	SLC25A21
TCGA.AA.3956	14	37490516	37490874	3	-6.6417	LARGE-LOSS	FOCAL	1	SLC25A21
TCGA.AA.3530	14	37490516	37490927	4	-6.8686	LARGE-LOSS	FOCAL	1	SLC25A21
TCGA.AA.3844	14	37490516	37490927	4	-5.4031	LARGE-LOSS	FOCAL	1	SLC25A21
TCGA.AA.3982	14	37490516	37490927	4	-8.0126	LARGE-LOSS	FOCAL	1	SLC25A21
TCGA.AA.3811	14	37490808	37490927	3	-5.7769	LARGE-LOSS	FOCAL	1	SLC25A21
TCGA.AA.A010.01A	14	38060579	38064040	3	-2.0713	LARGE-LOSS	FOCAL	1	FOXA1
TCGA.G4.6294	14	38114822	38138175	5	-6.7168	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	38852802	38859785	4	-3.8801	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	14	38988840	38991927	3	-3.5366	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	38988840	38991927	3	-3.2944	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	14	38988840	38998523	4	-3.1232	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	39517823	39565063	14	-1.366	LARGE-LOSS	FOCAL	1	SEC23A
TCGA.AA.A00N.01A	14	39721974	39771291	11	-1.3838	LARGE-LOSS	FOCAL	2	"CTAGE5,MIA2"
TCGA.AG.3726	14	41469730	41470425	3	-2.2458	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6648	14	41633384	41653976	3	-1.6481	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3841	14	41633384	41653976	3	-4.6756	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	14	41928813	41930836	3	-7.6348	LARGE-LOSS	FOCAL	0	None
TCGA.DC.4749	14	45192372	45203475	10	-4.6169	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	14	45369607	45374519	4	-1.9529	LARGE-LOSS	FOCAL	1	C14orf28
TCGA.CK.5914.01A	14	45369607	45374519	4	-1.582	LARGE-LOSS	FOCAL	1	C14orf28
TCGA.AA.A00N.01A	14	45369607	45400498	6	-1.7348	LARGE-LOSS	FOCAL	2	"C14orf28,KLHL28"
TCGA.AA.A02H.01A	14	45693149	45700307	4	-3.0417	LARGE-LOSS	FOCAL	1	MIS18BP1
TCGA.D5.5538	14	45736538	46129913	65	-1.5981	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6459	14	45893091	45897329	3	-1.3789	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6307	14	45893091	45897329	3	-1.7426	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6320	14	45893091	45897329	3	-4.2491	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	14	47417992	47418296	5	-4.2857	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AA.3530	14	47417992	47421179	6	-8.6796	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AA.3811	14	47417992	47421179	6	-7.326	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AA.3844	14	47417992	47421179	6	-5.6402	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AA.3982	14	47417992	47421179	6	-8.9058	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AA.3941	14	47417992	47421399	7	-5.4609	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AA.3860	14	47708285	47713682	3	-5.462	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AG.3882	14	47708396	47716282	3	-5.2664	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AA.3850	14	47801436	47804149	3	-9.88765	LARGE-LOSS	FOCAL	1	MDGA2
TCGA.AA.A010.01A	14	48143667	50117939	20	-1.7408	LARGE-LOSS	FOCAL	7	"DNAAF2,LRR1,MDGA2,MGAT2,POLE2,RPL36AL,RPS29"
TCGA.AA.3841	14	48244557	48277275	10	-3.0065	LARGE-LOSS	FOCAL	0	None
TCGA.D5.5540	14	49218388	49831094	172	-3.5222	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02E.01A	14	50052621	50052932	2	-4.5044	LARGE-LOSS	FOCAL	1	RPS29
TCGA.AA.A00N.01A	14	50069056	50099968	9	-2.3594	LARGE-LOSS	FOCAL	4	"DNAAF2,LRR1,MGAT2,RPL36AL"
TCGA.AG.3909.01A	14	50069056	50099968	9	-1.3475	LARGE-LOSS	FOCAL	4	"DNAAF2,LRR1,MGAT2,RPL36AL"
TCGA.CK.5914.01A	14	50069056	50099968	9	-1.7457	LARGE-LOSS	FOCAL	4	"DNAAF2,LRR1,MGAT2,RPL36AL"
TCGA.AG.A025.01A	14	50458931	50459445	2	-5.2977	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	14	50666370	50713746	6	-1.7037	LARGE-LOSS	FOCAL	2	"L2HGDH,SOS2"
TCGA.AA.3833	14	52222794	52227750	4	-1.5547	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3972	14	52389387	52421385	17	-2.9522	LARGE-LOSS	FOCAL	1	GNG2
TCGA.AA.3982	14	52421385	52425441	5	-2.9881	LARGE-LOSS	FOCAL	1	GNG2
TCGA.AA.A00N.01A	14	52457995	52474501	10	-1.3711	LARGE-LOSS	FOCAL	2	"C14orf166,NID2"
TCGA.AA.3941	14	52980189	52983461	3	-4.6722	LARGE-LOSS	FOCAL	1	TXNDC16
TCGA.AA.A00N.01A	14	53003378	53010077	4	-1.4973	LARGE-LOSS	FOCAL	1	TXNDC16
TCGA.AA.A010.01A	14	53003378	53010077	4	-1.8916	LARGE-LOSS	FOCAL	1	TXNDC16
TCGA.AA.A00N.01A	14	53245031	53251164	5	-1.4089	LARGE-LOSS	FOCAL	1	GNPNAT1
TCGA.AA.A00N.01A	14	54416738	54950341	21	-1.3728	LARGE-LOSS	FOCAL	4	"BMP4,CDKN3,CNIH1,GMFB"
TCGA.AA.A010.01A	14	54875384	54903035	9	-1.3848	LARGE-LOSS	FOCAL	2	"CDKN3,CNIH1"
TCGA.CK.5914.01A	14	55493381	55528309	7	-1.4946	LARGE-LOSS	FOCAL	3	"MAPK1IP1L,SOCS4,WDHD1"
TCGA.A6.5667	14	55855595	55862955	3	-4.2031	LARGE-LOSS	FOCAL	1	ATG14
TCGA.AG.3909.01A	14	55881037	55903300	6	-1.5786	LARGE-LOSS	FOCAL	1	TBPL2
TCGA.AA.3982	14	56817658	56831893	6	-1.8335	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	14	56819753	56831893	4	-1.6499	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2690	14	56941473	56943994	3	-6.5846	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	14	57067694	57068678	4	-2.6904	LARGE-LOSS	FOCAL	1	TMEM260
TCGA.AA.3977	14	57067694	57068678	4	-1.9124	LARGE-LOSS	FOCAL	1	TMEM260
TCGA.AA.3982	14	57067694	57069274	5	-2.5497	LARGE-LOSS	FOCAL	1	TMEM260
TCGA.AA.3818	14	57627638	57628877	3	-1.4843	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	58308023	58311161	4	-2.0604	LARGE-LOSS	FOCAL	1	SLC35F4
TCGA.AA.A010.01A	14	58604706	58686360	10	-2.0801	LARGE-LOSS	FOCAL	2	"ACTR10,C14orf37"
TCGA.AA.A00N.01A	14	58766476	58772699	5	-1.8482	LARGE-LOSS	FOCAL	1	ARID4A
TCGA.AG.4009.01A	14	59107406	59111939	3	-1.4875	LARGE-LOSS	FOCAL	1	DACT1
TCGA.AA.A00N.01A	14	59107406	59113969	4	-2.1106	LARGE-LOSS	FOCAL	1	DACT1
TCGA.AG.3909.01A	14	59107406	59113969	4	-1.7298	LARGE-LOSS	FOCAL	1	DACT1
TCGA.AA.A00N.01A	14	59930438	59970570	13	-1.359	LARGE-LOSS	FOCAL	3	"GPR135,JKAMP,L3HYPDH"
TCGA.AA.3982	14	60148799	60149232	3	-4.4937	LARGE-LOSS	FOCAL	1	RTN1
TCGA.A6.3808.01A	14	60635342	60756473	5	-2.1275	LARGE-LOSS	FOCAL	1	PPM1A
TCGA.AA.3982	14	62931859	62937053	10	-1.78	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	62943724	62947760	4	-1.8842	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3854	14	63213610	63214336	4	-1.3916	LARGE-LOSS	FOCAL	1	KCNH5
TCGA.A6.3808.01A	14	63856283	63863257	5	-3.6891	LARGE-LOSS	FOCAL	1	PPP2R5E
TCGA.AA.A010.01A	14	64914886	64939237	11	-1.4844	LARGE-LOSS	FOCAL	3	"AKAP5,MTHFD1,ZBTB25"
TCGA.CK.5914.01A	14	64924885	64957037	9	-1.4961	LARGE-LOSS	FOCAL	3	"AKAP5,MTHFD1,ZBTB25"
TCGA.AA.A00N.01A	14	64924885	65035051	23	-1.519	LARGE-LOSS	FOCAL	6	"AKAP5,HSPA2,MTHFD1,PPP1R36,ZBTB1,ZBTB25"
TCGA.AA.A02E.01A	14	65197284	65199470	6	-3.0303	LARGE-LOSS	FOCAL	1	PLEKHG3
TCGA.AA.3850	14	66205648	66213464	4	-1.96825	LARGE-LOSS	FOCAL	1	FUT8
TCGA.AA.A00N.01A	14	67799450	67819619	9	-1.51	LARGE-LOSS	FOCAL	2	"ATP6V1D,MPP5"
TCGA.AA.3982	14	68571583	68576924	3	-4.8515	LARGE-LOSS	FOCAL	1	RAD51B
TCGA.AA.3850	14	68576046	68583627	3	-4.74285	LARGE-LOSS	FOCAL	1	RAD51B
TCGA.AA.3941	14	68576046	68583627	3	-6.1619	LARGE-LOSS	FOCAL	1	RAD51B
TCGA.EI.7002	14	68747867	68846502	51	-3.9929	LARGE-LOSS	FOCAL	1	RAD51B
TCGA.AA.A00N.01A	14	70234837	70245902	8	-1.8262	LARGE-LOSS	FOCAL	2	"SLC10A1,SRSF5"
TCGA.AA.3844	14	72574447	72577583	3	-4.0868	LARGE-LOSS	FOCAL	1	RGS6
TCGA.AA.3941	14	72574447	72577583	3	-3.9524	LARGE-LOSS	FOCAL	1	RGS6
TCGA.DM.A0XF	14	73213834	73218823	3	-7.1157	LARGE-LOSS	FOCAL	1	DPF3
TCGA.AA.3509.01A	14	74004084	74008170	2	-4.6559	LARGE-LOSS	FOCAL	2	"ACOT1,HEATR4"
TCGA.AA.A010.01A	14	74040070	74061722	5	-2.1676	LARGE-LOSS	FOCAL	2	"ACOT2,ACOT4"
TCGA.AA.A00N.01A	14	74040070	74085960	7	-1.646	LARGE-LOSS	FOCAL	3	"ACOT2,ACOT4,ACOT6"
TCGA.AA.A00N.01A	14	74343654	74358798	7	-1.4745	LARGE-LOSS	FOCAL	2	"PTGR2,ZNF410"
TCGA.A6.3808.01A	14	74420121	74429596	7	-1.401	LARGE-LOSS	FOCAL	1	COQ6
TCGA.AA.A010.01A	14	74486133	74500683	4	-2.1034	LARGE-LOSS	FOCAL	1	CCDC176
TCGA.A6.3808.01A	14	74486133	74516403	8	-2.7297	LARGE-LOSS	FOCAL	1	CCDC176
TCGA.AA.A02F.01A	14	75471443	75473297	3	-5.3444	LARGE-LOSS	FOCAL	1	EIF2B2
TCGA.AA.A00N.01A	14	75506577	75544154	9	-1.7515	LARGE-LOSS	FOCAL	3	"ACYP1,MLH3,ZC2HC1C"
TCGA.AG.4009.01A	14	75745636	75747855	4	-1.5882	LARGE-LOSS	FOCAL	1	FOS
TCGA.AG.A01W.01A	14	76081408	76090126	6	-1.3863	LARGE-LOSS	FOCAL	1	FLVCR2
TCGA.AA.A02E.01A	14	76437432	76437856	2	-4.5304	LARGE-LOSS	FOCAL	1	TGFB3
TCGA.AG.A025.01A	14	77269663	77270080	2	-6.1938	LARGE-LOSS	FOCAL	1	ANGEL1
TCGA.A6.2682	14	77451107	77460199	3	-4.4561	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4614	14	77451107	77460199	3	-4.0136	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	14	77491738	77605507	8	-1.4934	LARGE-LOSS	FOCAL	3	"CIPC,IRF2BPL,ZDHHC22"
TCGA.A6.3808.01A	14	77691687	77715083	14	-1.4327	LARGE-LOSS	FOCAL	1	TMEM63C
TCGA.AG.4009.01A	14	77872276	77880240	4	-1.4979	LARGE-LOSS	FOCAL	1	NOXRED1
TCGA.AA.A02F.01A	14	77930888	77931854	2	-5.8395	LARGE-LOSS	FOCAL	1	AHSA1
TCGA.AG.A023.01A	14	77930888	77931854	2	-4.5103	LARGE-LOSS	FOCAL	1	AHSA1
TCGA.AA.3982	14	78603139	78604365	5	-1.8113	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	14	78603139	78604381	6	-1.3313	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	78981600	78986149	3	-7.4047	LARGE-LOSS	FOCAL	1	NRXN3
TCGA.AA.3526	14	79457643	79458611	3	-6.8823	LARGE-LOSS	FOCAL	1	NRXN3
TCGA.4N.A93T	14	81097180	81270156	48	-4.2417	LARGE-LOSS	FOCAL	1	CEP128
TCGA.AA.A010.01A	14	81663702	81686746	5	-2.6445	LARGE-LOSS	FOCAL	1	GTF2A1
TCGA.AA.3844	14	82174934	82176156	3	-1.637	LARGE-LOSS	FOCAL	0	None
TCGA.D5.5540	14	85698742	85873932	67	-4.2255	LARGE-LOSS	FOCAL	0	None
TCGA.4N.A93T	14	86137095	86163284	16	-2.2611	LARGE-LOSS	FOCAL	0	None
TCGA.4N.A93T	14	86163393	86163459	3	-7.3586	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	14	86443616	86478121	10	-3.2889	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3818	14	87601031	87606703	3	-3.7928	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	14	89016561	89068221	13	-1.3786	LARGE-LOSS	FOCAL	2	"PTPN21,ZC3H14"
TCGA.AA.A00N.01A	14	89029935	89044302	8	-1.6173	LARGE-LOSS	FOCAL	1	ZC3H14
TCGA.G4.6586	14	89575812	89577661	3	-3.9036	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4681	14	89577412	89581570	3	-3.9092	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	90866338	90870951	5	-2.0331	LARGE-LOSS	FOCAL	1	CALM1
TCGA.AG.3909.01A	14	90866338	90870951	5	-1.5292	LARGE-LOSS	FOCAL	1	CALM1
TCGA.CK.5914.01A	14	90866338	90870951	5	-1.4707	LARGE-LOSS	FOCAL	1	CALM1
TCGA.AY.6196	14	91259032	91265600	4	-1.9663	LARGE-LOSS	FOCAL	1	TTC7B
TCGA.AA.A00N.01A	14	92040461	92058188	6	-1.595	LARGE-LOSS	FOCAL	1	CATSPERB
TCGA.G4.6321	14	92389046	92389464	3	-1.9365	LARGE-LOSS	FOCAL	1	FBLN5
TCGA.AG.4009.01A	14	93170587	93185041	11	-1.457	LARGE-LOSS	FOCAL	1	LGMN
TCGA.AA.A010.01A	14	93170587	93198946	12	-2.4258	LARGE-LOSS	FOCAL	1	LGMN
TCGA.AG.A01N.01A	14	93179094	93183668	5	-3.1158	LARGE-LOSS	FOCAL	1	LGMN
TCGA.AG.A025.01A	14	93542852	93688588	14	-2.4495	LARGE-LOSS	FOCAL	5	"C14orf142,ITPK1,MOAP1,TMEM251,UBR7"
TCGA.AA.A010.01A	14	93581360	93670002	5	-2.3997	LARGE-LOSS	FOCAL	4	"C14orf142,ITPK1,MOAP1,TMEM251"
TCGA.CK.5914.01A	14	93649510	93693234	15	-1.3904	LARGE-LOSS	FOCAL	4	"C14orf142,MOAP1,TMEM251,UBR7"
TCGA.AY.6197	14	95064163	95066551	3	-2.2197	LARGE-LOSS	FOCAL	0	None
TCGA.G5.6235	14	95064163	95066551	3	-5.1157	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3594	14	95091941	95095001	3	-2.4616	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3516	14	95903026	95906537	3	-2.4328	LARGE-LOSS	FOCAL	1	SYNE3
TCGA.AA.A00N.01A	14	96848603	96904139	8	-1.4361	LARGE-LOSS	FOCAL	2	"AK7,GSKIP"
TCGA.AA.3864	14	98211528	98216903	3	-1.8076	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3989	14	98211528	98216903	3	-1.9177	LARGE-LOSS	FOCAL	0	None
TCGA.CA.6715	14	98647549	98653325	7	-5.4632	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	98984079	98984323	3	-4.8473	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	14	98984079	98985734	5	-2.3064	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	14	99032724	99034924	3	-4.3455	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3696	14	99181303	99189251	5	-8.7634	LARGE-LOSS	FOCAL	1	C14orf177
TCGA.AA.3696	14	99663846	99666399	3	-4.6815	LARGE-LOSS	FOCAL	1	BCL11B
TCGA.AA.A00N.01A	14	99958963	99973349	9	-1.7685	LARGE-LOSS	FOCAL	1	CCNK
TCGA.AA.A010.01A	14	100123338	100158057	10	-2.2352	LARGE-LOSS	FOCAL	2	"CYP46A1,HHIPL1"
TCGA.AA.3862.01A	14	101006775	101533020	50	-1.5128	LARGE-LOSS	FOCAL	3	"BEGAIN,DLK1,RTL1"
TCGA.A6.3808.01A	14	101340777	101507645	20	-1.9029	LARGE-LOSS	FOCAL	1	RTL1
TCGA.AA.3982	14	101395705	101411360	5	-1.4375	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	14	102026586	102252336	5	-2.2195	LARGE-LOSS	FOCAL	2	"DIO3,PPP2R5C"
TCGA.AA.A010.01A	14	102430997	102457817	11	-1.398	LARGE-LOSS	FOCAL	1	DYNC1H1
TCGA.AA.A00N.01A	14	102516745	102552506	10	-2.0901	LARGE-LOSS	FOCAL	2	"DYNC1H1,HSP90AA1"
TCGA.AG.3909.01A	14	102516745	102552506	10	-1.3264	LARGE-LOSS	FOCAL	2	"DYNC1H1,HSP90AA1"
TCGA.AG.4009.01A	14	102548002	102552506	9	-1.4135	LARGE-LOSS	FOCAL	1	HSP90AA1
TCGA.CK.5914.01A	14	102548002	102552506	9	-1.4033	LARGE-LOSS	FOCAL	1	HSP90AA1
TCGA.AA.A010.01A	14	102548002	102568185	10	-1.7176	LARGE-LOSS	FOCAL	1	HSP90AA1
TCGA.AG.3909.01A	14	102674923	102699987	6	-1.3701	LARGE-LOSS	FOCAL	2	"MOK,WDR20"
TCGA.AA.A010.01A	14	102792365	102800846	4	-1.9966	LARGE-LOSS	FOCAL	1	ZNF839
TCGA.AA.A010.01A	14	102963266	103167544	7	-1.4645	LARGE-LOSS	FOCAL	3	"ANKRD9,RCOR1,TECPR2"
TCGA.AA.A00N.01A	14	103425946	103447073	12	-1.6384	LARGE-LOSS	FOCAL	1	CDC42BPB
TCGA.AA.A010.01A	14	103592763	103807266	19	-2.7541	LARGE-LOSS	FOCAL	2	"EIF5,TNFAIP2"
TCGA.AA.A00N.01A	14	103802134	103852293	10	-2.1033	LARGE-LOSS	FOCAL	2	"EIF5,MARK3"
TCGA.AA.A010.01A	14	103964816	104028201	14	-1.5104	LARGE-LOSS	FOCAL	4	"BAG5,CKB,MARK3,TRMT61A"
TCGA.AA.A00N.01A	14	104378921	104387212	4	-1.991	LARGE-LOSS	FOCAL	1	C14orf2
TCGA.AA.A010.01A	14	104378921	104394820	5	-1.7488	LARGE-LOSS	FOCAL	2	"C14orf2,TDRD9"
TCGA.AA.A010.01A	14	104558921	104624055	18	-1.4303	LARGE-LOSS	FOCAL	2	"ASPG,KIF26A"
TCGA.A6.3808.01A	14	104559781	105219490	69	-1.6517	LARGE-LOSS	FOCAL	7	"ADSSL1,ASPG,C14orf180,INF2,KIF26A,SIVA1,TMEM179"
TCGA.F5.6811.01A	14	105180558	105181849	3	-1.712	LARGE-LOSS	FOCAL	1	INF2
TCGA.AA.A010.01A	14	105196244	105213213	12	-1.6343	LARGE-LOSS	FOCAL	1	ADSSL1
TCGA.AA.A010.01A	14	105237055	105349018	18	-1.7279	LARGE-LOSS	FOCAL	3	"AKT1,CEP170B,ZBTB42"
TCGA.AG.4009.01A	14	105452762	105477501	6	-1.4668	LARGE-LOSS	FOCAL	2	"C14orf79,CDCA4"
TCGA.AA.A00N.01A	14	105452762	105521679	8	-1.4119	LARGE-LOSS	FOCAL	3	"C14orf79,CDCA4,GPR132"
TCGA.AA.A010.01A	14	105452762	105521679	8	-1.5338	LARGE-LOSS	FOCAL	3	"C14orf79,CDCA4,GPR132"
TCGA.AG.3909.01A	14	105455273	105521679	7	-1.4251	LARGE-LOSS	FOCAL	3	"C14orf79,CDCA4,GPR132"
TCGA.AA.A010.01A	14	105609015	105643950	19	-2.1965	LARGE-LOSS	FOCAL	2	"JAG2,NUDT14"
TCGA.AA.A010.01A	14	105676815	105962209	69	-1.5478	LARGE-LOSS	FOCAL	8	"BRF1,BTBD6,C14orf80,CRIP1,CRIP2,MTA1,PACS2,TEX22"
TCGA.AA.3866	14	106008644	106098345	3	-1.5582	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3598	14	106008644	106098345	3	-7.6157	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6881	14	106078689	106194762	3	-4.9711	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	14	106170718	106306656	19	-1.6675	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	14	106329972	106494108	38	-2.7017	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02K.01A	14	106372984	106380157	6	-1.3515	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3581	14	107283008	107285436	3	-3.0464	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5344	15	20143408	20172594	3	-5.0736	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3848	15	20143408	22560361	17	-1.9977	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.3854	15	20143408	22560361	17	-1.5684	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.G4.6294	15	20143408	22560361	17	-2.8404	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.A6.6650	15	20143408	22582901	13	-4.2038	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.A6.A56B	15	20143408	22582901	18	-4.5754	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.3979	15	20143650	22560361	15	-3.1468	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.A6.3809	15	20143650	22582901	11	-2.9327	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AF.A56N	15	20549877	22582901	12	-4.1873	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.A6.2678	15	20556429	22582901	10	-3.3663	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.NH.A50U	15	20556429	22582901	10	-1.7049	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.3967.01A	15	20588543	20657685	7	-1.603	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6165.01A	15	20588543	21071154	10	-1.4727	LARGE-LOSS	FOCAL	4	"GOLGA6L6,POTEB,POTEB2,POTEB3"
TCGA.AZ.4684.01A	15	20588543	22413660	15	-1.7096	LARGE-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.A6.2681	15	22422347	22582901	4	-5.8076	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3693	15	22422347	22582901	4	-7.3399	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	15	22835844	22850870	9	-2.0987	LARGE-LOSS	FOCAL	1	TUBGCP5
TCGA.AA.A010.01A	15	22835844	22850870	9	-1.7905	LARGE-LOSS	FOCAL	1	TUBGCP5
TCGA.AG.3909.01A	15	22872347	23052553	36	-1.5117	LARGE-LOSS	FOCAL	4	"CYFIP1,NIPA1,NIPA2,TUBGCP5"
TCGA.AA.A01K.01A	15	22999291	23000044	2	-7.4387	LARGE-LOSS	FOCAL	1	CYFIP1
TCGA.AF.3914.01A	15	23889123	24925809	6	-1.4205	LARGE-LOSS	FOCAL	3	"MAGEL2,NDN,NPAP1"
TCGA.AA.3697	15	24201865	24205247	3	-7.8872	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3911	15	24201865	24205247	3	-5.5374	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3591	15	24201865	24205247	3	-7.329	LARGE-LOSS	FOCAL	0	None
TCGA.AM.5820	15	24201865	24205247	3	-6.9959	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6138	15	24397618	24431226	5	-2.1508	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6138	15	24431802	24433584	3	-5.1545	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6538	15	24514619	24527472	6	-5.6213	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D4	15	24514619	24647993	15	-5.0947	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3560	15	24521697	24647993	13	-5.3131	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3693	15	24727230	24749580	4	-9.0357	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A0XA	15	24727230	24749580	4	-4.0191	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6683	15	24749580	24801794	4	-5.2264	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	15	24920966	25213032	10	-1.5956	LARGE-LOSS	FOCAL	3	"NPAP1,SNRPN,SNURF"
TCGA.AA.3941	15	25385992	25391003	4	-6.3418	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	15	25386426	25391003	3	-5.1175	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5656	15	25427207	25430242	3	-8.4239	LARGE-LOSS	FOCAL	0	None
TCGA.EI.7002	15	25427207	25430242	3	-7.546	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3612	15	25868209	25870167	4	-9.4809	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3612	15	25873008	29410577	1076	-1.3602	LARGE-LOSS	FOCAL	8	"APBA2,ATP10A,GABRA5,GABRB3,GABRG3,GOLGA8M,HERC2,OCA2"
TCGA.AG.4008	15	26938487	26940464	3	-4.4555	LARGE-LOSS	FOCAL	1	GABRB3
TCGA.AA.A010.01A	15	27017493	27222108	13	-1.4299	LARGE-LOSS	FOCAL	3	"GABRA5,GABRB3,GABRG3"
TCGA.AG.4009.01A	15	27114342	27128248	3	-1.3413	LARGE-LOSS	FOCAL	1	GABRA5
TCGA.DY.A0XA	15	27445748	27496128	31	-1.3562	LARGE-LOSS	FOCAL	1	GABRG3
TCGA.NH.A6GA	15	27925835	27926498	3	-1.3452	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01K.01A	15	28202683	28211805	2	-5.8412	LARGE-LOSS	FOCAL	1	OCA2
TCGA.AG.3909.01A	15	28261201	28370102	17	-1.4476	LARGE-LOSS	FOCAL	2	"HERC2,OCA2"
TCGA.AG.3612	15	29412046	29424754	6	-8.391	LARGE-LOSS	FOCAL	1	FAM189A1
TCGA.AA.A01I.01A	15	29996315	29997695	2	-3.8467	LARGE-LOSS	FOCAL	1	TJP1
TCGA.CK.4952.01A	15	30239008	30242670	2	-3.8164	LARGE-LOSS	FOCAL	1	TJP1
TCGA.A6.3808.01A	15	30654458	31210317	17	-1.3863	LARGE-LOSS	FOCAL	5	"ARHGAP11B,CHRFAM7A,FAN1,GOLGA8H,GOLGA8R"
TCGA.AG.3909.01A	15	30663248	30927673	10	-1.4316	LARGE-LOSS	FOCAL	4	"ARHGAP11B,CHRFAM7A,GOLGA8H,GOLGA8R"
TCGA.AG.3909.01A	15	31196857	31214410	7	-2.2435	LARGE-LOSS	FOCAL	1	FAN1
TCGA.CK.5914.01A	15	31196857	31214410	7	-1.3812	LARGE-LOSS	FOCAL	1	FAN1
TCGA.AA.3666	15	31331839	31637995	128	-1.6139	LARGE-LOSS	FOCAL	3	"KLF13,LOC283710,TRPM1"
TCGA.AA.A010.01A	15	31775445	31795847	5	-2.2915	LARGE-LOSS	FOCAL	1	OTUD7A
TCGA.AA.3693	15	32510091	32511554	3	-7.8861	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	15	33833212	33836629	3	-4.1642	LARGE-LOSS	FOCAL	1	RYR3
TCGA.AH.6544	15	33908618	33911932	3	-2.9948	LARGE-LOSS	FOCAL	1	RYR3
TCGA.A6.3808.01A	15	34394725	34444940	9	-2.0981	LARGE-LOSS	FOCAL	2	"KATNBL1,PGBD4"
TCGA.AA.A010.01A	15	34642855	34652270	9	-2.1731	LARGE-LOSS	FOCAL	2	"LPCAT4,NUTM1"
TCGA.AA.A010.01A	15	34653552	34659146	8	-2.6036	LARGE-LOSS	FOCAL	1	LPCAT4
TCGA.AF.3914.01A	15	34654378	34657743	6	-1.4525	LARGE-LOSS	FOCAL	1	LPCAT4
TCGA.DM.A28M.01A	15	34678824	35044642	4	-1.7669	LARGE-LOSS	FOCAL	3	"GJD2,GOLGA8A,GOLGA8B"
TCGA.4N.A93T	15	34719934	34776766	4	-8.4933	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3911	15	34763615	34800594	6	-5.3785	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6780	15	34768542	34780906	4	-4.84	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	15	37375924	37391575	7	-2.6208	LARGE-LOSS	FOCAL	1	MEIS2
TCGA.AA.3941	15	37817573	37823654	8	-4.3558	LARGE-LOSS	FOCAL	0	None
TCGA.RU.A8FL	15	38221688	38223643	3	-7.3847	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	15	40580879	40661002	38	-2.2118	LARGE-LOSS	FOCAL	5	"C15orf52,DISP2,INAFM2,PHGR1,PLCB2"
TCGA.AF.3914.01A	15	40656355	40661002	6	-1.4818	LARGE-LOSS	FOCAL	1	DISP2
TCGA.AG.3909.01A	15	40656355	40685629	16	-1.5976	LARGE-LOSS	FOCAL	2	"DISP2,KNSTRN"
TCGA.AA.A02H.01A	15	40675017	40675377	2	-4.9882	LARGE-LOSS	FOCAL	1	KNSTRN
TCGA.AA.A00N.01A	15	40678546	40685629	8	-1.6345	LARGE-LOSS	FOCAL	1	KNSTRN
TCGA.AA.A010.01A	15	40710299	40763401	8	-1.8641	LARGE-LOSS	FOCAL	3	"BAHD1,CHST14,IVD"
TCGA.AZ.4684.01A	15	40895046	40907466	7	-1.6196	LARGE-LOSS	FOCAL	1	CASC5
TCGA.AA.A00N.01A	15	40949223	41001178	8	-1.3718	LARGE-LOSS	FOCAL	2	"CASC5,RAD51"
TCGA.AA.A010.01A	15	41222764	41247522	11	-1.6952	LARGE-LOSS	FOCAL	2	"CHAC1,DLL4"
TCGA.AA.A010.01A	15	41657578	41688646	9	-1.8859	LARGE-LOSS	FOCAL	2	"NDUFAF1,NUSAP1"
TCGA.AA.A010.01A	15	41756917	41794965	19	-1.9366	LARGE-LOSS	FOCAL	2	"ITPKA,RTF1"
TCGA.AA.A010.01A	15	41796192	41801178	8	-2.7435	LARGE-LOSS	FOCAL	1	LTK
TCGA.AA.A010.01A	15	41803310	41827680	21	-1.7918	LARGE-LOSS	FOCAL	2	"LTK,RPAP1"
TCGA.AA.A010.01A	15	41828272	41863738	15	-2.2474	LARGE-LOSS	FOCAL	2	"RPAP1,TYRO3"
TCGA.AA.A010.01A	15	41864594	41870124	5	-1.6623	LARGE-LOSS	FOCAL	1	TYRO3
TCGA.AA.A02R.01A	15	42104103	42106711	6	-3.8745	LARGE-LOSS	FOCAL	1	MAPKBP1
TCGA.A6.3808.01A	15	42117385	42179361	70	-1.3309	LARGE-LOSS	FOCAL	5	"JMJD7,JMJD7-PLA2G4B,MAPKBP1,PLA2G4B,SPTBN5"
TCGA.AG.3909.01A	15	42138384	42140724	4	-1.7763	LARGE-LOSS	FOCAL	3	"JMJD7-PLA2G4B,PLA2G4B,SPTBN5"
TCGA.AG.A02G.01A	15	42150751	42151042	2	-6.117	LARGE-LOSS	FOCAL	1	SPTBN5
TCGA.D5.6929	15	42184258	42186350	3	-3.6888	LARGE-LOSS	FOCAL	1	SPTBN5
TCGA.AG.A02X.01A	15	42437725	42438278	2	-4.9689	LARGE-LOSS	FOCAL	1	PLA2G4F
TCGA.AA.3982	15	42579109	42584060	5	-1.387	LARGE-LOSS	FOCAL	1	GANC
TCGA.AA.3811	15	42579947	42581581	3	-2.1838	LARGE-LOSS	FOCAL	1	GANC
TCGA.AA.3850	15	42579983	42584060	3	-2.24925	LARGE-LOSS	FOCAL	1	GANC
TCGA.AG.3909.01A	15	42836220	42858806	9	-1.5045	LARGE-LOSS	FOCAL	2	"HAUS2,LRRC57"
TCGA.AA.A00N.01A	15	42850351	42858806	5	-1.9776	LARGE-LOSS	FOCAL	1	HAUS2
TCGA.AA.A02F.01A	15	43020800	43023781	7	-4.7124	LARGE-LOSS	FOCAL	1	CDAN1
TCGA.AG.3909.01A	15	43268867	43314848	14	-1.541	LARGE-LOSS	FOCAL	1	UBR1
TCGA.CK.5914.01A	15	43280979	43309240	8	-1.3898	LARGE-LOSS	FOCAL	1	UBR1
TCGA.AA.A00N.01A	15	43290349	43314848	8	-2.2381	LARGE-LOSS	FOCAL	1	UBR1
TCGA.AA.A00N.01A	15	43316980	43319899	4	-1.4319	LARGE-LOSS	FOCAL	1	UBR1
TCGA.AG.3909.01A	15	43426408	43446843	8	-1.9138	LARGE-LOSS	FOCAL	1	TMEM62
TCGA.AA.A00N.01A	15	43426408	43489463	25	-1.7545	LARGE-LOSS	FOCAL	3	"CCNDBP1,EPB42,TMEM62"
TCGA.AG.3909.01A	15	43452837	43476431	5	-2.7004	LARGE-LOSS	FOCAL	1	TMEM62
TCGA.AG.3909.01A	15	43477999	43526920	26	-1.5227	LARGE-LOSS	FOCAL	3	"CCNDBP1,EPB42,TGM5"
TCGA.AA.A00N.01A	15	43762069	43784155	9	-1.5807	LARGE-LOSS	FOCAL	1	TP53BP1
TCGA.AG.3909.01A	15	43762069	43784460	10	-1.8871	LARGE-LOSS	FOCAL	1	TP53BP1
TCGA.A6.3808.01A	15	43873149	43990190	36	-2.1436	LARGE-LOSS	FOCAL	5	"CATSPER2,CKMT1A,CKMT1B,PPIP5K1,STRC"
TCGA.AH.6549.01A	15	43889533	43897412	13	-1.623	LARGE-LOSS	FOCAL	2	"CKMT1B,STRC"
TCGA.AG.A02X.01A	15	43892146	43892417	2	-5.1947	LARGE-LOSS	FOCAL	1	STRC
TCGA.AA.A00N.01A	15	43922818	44067943	37	-1.4228	LARGE-LOSS	FOCAL	4	"CATSPER2,CKMT1A,ELL3,PDIA3"
TCGA.AG.3909.01A	15	44057636	44067943	12	-1.8076	LARGE-LOSS	FOCAL	2	"ELL3,PDIA3"
TCGA.A6.3808.01A	15	44615119	44846701	24	-1.8556	LARGE-LOSS	FOCAL	3	"CASC4,CTDSPL2,EIF3J"
TCGA.AG.3909.01A	15	44943667	44952638	5	-1.456	LARGE-LOSS	FOCAL	1	SPG11
TCGA.D5.6932	15	44992474	45121634	50	-2.2685	LARGE-LOSS	FOCAL	2	"B2M,TRIM69"
TCGA.AA.A01I.01A	15	45393939	45396113	2	-4.0716	LARGE-LOSS	FOCAL	1	DUOX2
TCGA.AG.A025.01A	15	45564471	45564820	2	-6.8527	LARGE-LOSS	FOCAL	1	SLC28A2
TCGA.AA.A00N.01A	15	45697516	45725134	10	-2.1503	LARGE-LOSS	FOCAL	2	"C15orf48,SPATA5L1"
TCGA.AG.3909.01A	15	45697516	45725134	10	-1.966	LARGE-LOSS	FOCAL	2	"C15orf48,SPATA5L1"
TCGA.AA.A01K.01A	15	45722946	45725134	3	-5.9559	LARGE-LOSS	FOCAL	1	C15orf48
TCGA.AA.3977	15	47182657	47184130	4	-1.6275	LARGE-LOSS	FOCAL	0	None
TCGA.CI.6622	15	47518806	47519544	4	-1.6095	LARGE-LOSS	FOCAL	1	SEMA6D
TCGA.EI.6508	15	47518806	47519544	4	-1.6045	LARGE-LOSS	FOCAL	1	SEMA6D
TCGA.D5.6535	15	47519033	47519544	3	-5.0159	LARGE-LOSS	FOCAL	1	SEMA6D
TCGA.EI.6513	15	47519033	47519544	3	-6.9687	LARGE-LOSS	FOCAL	1	SEMA6D
TCGA.AA.3977	15	47891231	47891412	3	-4.0853	LARGE-LOSS	FOCAL	1	SEMA6D
TCGA.A6.2686	15	48038858	48039222	3	-4.2878	LARGE-LOSS	FOCAL	1	SEMA6D
TCGA.AG.3909.01A	15	48626571	48634150	4	-1.531	LARGE-LOSS	FOCAL	1	DUT
TCGA.AA.A00N.01A	15	48626571	48703145	5	-1.356	LARGE-LOSS	FOCAL	2	"DUT,FBN1"
TCGA.AA.A02H.01A	15	49447662	49448124	2	-4.6014	LARGE-LOSS	FOCAL	2	"COPS2,GALK2"
TCGA.AA.A010.01A	15	52011553	52065857	6	-1.8472	LARGE-LOSS	FOCAL	3	"LYSMD2,SCG3,TMOD2"
TCGA.AA.3811	15	52102763	52103136	3	-1.8027	LARGE-LOSS	FOCAL	1	TMOD2
TCGA.AG.3909.01A	15	52179746	52188589	4	-1.7136	LARGE-LOSS	FOCAL	1	TMOD3
TCGA.AA.3941	15	54506390	54509913	7	-4.0297	LARGE-LOSS	FOCAL	1	UNC13C
TCGA.AA.3941	15	54580674	54623485	21	-1.6154	LARGE-LOSS	FOCAL	1	UNC13C
TCGA.AA.3864	15	54584463	54585883	3	-4.5429	LARGE-LOSS	FOCAL	1	UNC13C
TCGA.AA.3977	15	54584463	54585883	3	-2.0863	LARGE-LOSS	FOCAL	1	UNC13C
TCGA.AA.3989	15	54584463	54585883	3	-2.1823	LARGE-LOSS	FOCAL	1	UNC13C
TCGA.CM.4752	15	55136294	55136754	3	-1.9531	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6679	15	55136294	55136754	3	-9.09695	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6679	15	55136774	55262619	46	-1.55645	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	15	56243550	56395703	10	-1.4329	LARGE-LOSS	FOCAL	2	"NEDD4,RFX7"
TCGA.AG.3893	15	57337044	57472210	30	-1.7339	LARGE-LOSS	FOCAL	1	TCF12
TCGA.AA.A00N.01A	15	58000864	58006717	3	-1.667	LARGE-LOSS	FOCAL	2	"GCOM1,POLR2M"
TCGA.AA.A00N.01A	15	59934293	59974560	14	-1.667	LARGE-LOSS	FOCAL	2	"BNIP2,GTF2A2"
TCGA.AG.3909.01A	15	59942821	60297125	12	-1.9002	LARGE-LOSS	FOCAL	3	"BNIP2,FOXB1,GTF2A2"
TCGA.AA.A00N.01A	15	60646294	60678170	7	-1.428	LARGE-LOSS	FOCAL	1	ANXA2
TCGA.A6.6782	15	61688168	61694642	6	-4.0794	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6531	15	61688168	61694642	6	-6.0413	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6881	15	61688190	61692664	3	-6.7098	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	15	62325591	62456069	10	-1.8305	LARGE-LOSS	FOCAL	3	"C2CD4A,C2CD4B,VPS13C"
TCGA.CK.5914.01A	15	62360491	62362656	3	-1.4596	LARGE-LOSS	FOCAL	1	C2CD4A
TCGA.AG.A016.01A	15	62945309	62949963	3	-1.3393	LARGE-LOSS	FOCAL	1	TLN2
TCGA.AG.3909.01A	15	62978793	62999236	9	-1.3621	LARGE-LOSS	FOCAL	1	TLN2
TCGA.AA.A01I.01A	15	63353007	63353868	3	-6.0434	LARGE-LOSS	FOCAL	1	TPM1
TCGA.AA.A00N.01A	15	63414772	63448562	8	-1.8108	LARGE-LOSS	FOCAL	2	"LACTB,RPS27L"
TCGA.AG.3909.01A	15	63414772	63449501	9	-1.9309	LARGE-LOSS	FOCAL	2	"LACTB,RPS27L"
TCGA.AA.A010.01A	15	63866208	63915916	12	-2.2315	LARGE-LOSS	FOCAL	3	"FBXL22,HERC1,USP3"
TCGA.CK.5913	15	64264478	64267664	3	-3.9498	LARGE-LOSS	FOCAL	1	DAPK2
TCGA.AG.3909.01A	15	64444786	64454193	9	-1.567	LARGE-LOSS	FOCAL	2	"PPIB,SNX22"
TCGA.AG.3909.01A	15	65108455	65114428	7	-1.3891	LARGE-LOSS	FOCAL	1	PIF1
TCGA.AG.A00C.01A	15	65239587	65242050	2	-1.4665	LARGE-LOSS	FOCAL	1	ANKDD1A
TCGA.AA.A010.01A	15	65385384	65449130	16	-1.9278	LARGE-LOSS	FOCAL	3	"CLPX,PDCD7,UBAP1L"
TCGA.AG.3909.01A	15	65667387	65687390	14	-1.6622	LARGE-LOSS	FOCAL	2	"IGDCC3,IGDCC4"
TCGA.AG.4009.01A	15	65667387	65703311	18	-1.3893	LARGE-LOSS	FOCAL	2	"IGDCC3,IGDCC4"
TCGA.AA.A00N.01A	15	65799534	65807911	3	-1.7308	LARGE-LOSS	FOCAL	1	DPP8
TCGA.QG.A5Z1	15	66818044	67715272	389	-3.7872	LARGE-LOSS	FOCAL	6	"AAGAB,IQCH,LCTL,SMAD3,SMAD6,ZWILCH"
TCGA.G4.6626	15	66916321	66920560	3	-5.5728	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	15	66995548	67008719	4	-1.8493	LARGE-LOSS	FOCAL	1	SMAD6
TCGA.AM.5820	15	67135864	67505065	213	-2.3354	LARGE-LOSS	FOCAL	2	"AAGAB,SMAD3"
TCGA.EI.6513	15	67309271	67382050	42	-3.8906	LARGE-LOSS	FOCAL	1	SMAD3
TCGA.NH.A50U	15	67361773	67453888	61	-4.9072	LARGE-LOSS	FOCAL	1	SMAD3
TCGA.A6.5662	15	67467540	67533543	16	-6.3128	LARGE-LOSS	FOCAL	2	"AAGAB,SMAD3"
TCGA.CM.6165.01A	15	67473532	67501745	9	-1.6405	LARGE-LOSS	FOCAL	2	"AAGAB,SMAD3"
TCGA.AA.A010.01A	15	67792933	67842320	5	-1.8047	LARGE-LOSS	FOCAL	3	"C15orf61,IQCH,MAP2K5"
TCGA.AG.3909.01A	15	67792933	67873035	5	-1.4955	LARGE-LOSS	FOCAL	3	"C15orf61,IQCH,MAP2K5"
TCGA.AA.A00N.01A	15	67818728	67855568	4	-1.6931	LARGE-LOSS	FOCAL	2	"C15orf61,MAP2K5"
TCGA.AG.3909.01A	15	68122512	68124911	4	-2.0487	LARGE-LOSS	FOCAL	1	SKOR1
TCGA.AA.A010.01A	15	68122512	68125465	5	-1.5397	LARGE-LOSS	FOCAL	1	SKOR1
TCGA.AF.3914.01A	15	68122512	68126029	6	-1.6099	LARGE-LOSS	FOCAL	1	SKOR1
TCGA.DM.A1D6	15	68755081	68756700	4	-7.834	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	15	69689769	70347339	31	-1.6704	LARGE-LOSS	FOCAL	4	"KIF23,PAQR5,RPLP1,TLE3"
TCGA.AA.A00N.01A	15	69708306	70343668	25	-1.631	LARGE-LOSS	FOCAL	3	"KIF23,RPLP1,TLE3"
TCGA.F4.6461	15	70525179	70536994	4	-1.5892	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	15	71143922	71196842	9	-1.3355	LARGE-LOSS	FOCAL	3	"LARP6,LRRC49,THAP10"
TCGA.AG.3909.01A	15	71174746	71196842	7	-1.8192	LARGE-LOSS	FOCAL	2	"LRRC49,THAP10"
TCGA.AA.A010.01A	15	71403441	71433790	3	-2.5615	LARGE-LOSS	FOCAL	2	"CT62,THSD4"
TCGA.F4.6461	15	72030065	72030940	3	-1.5156	LARGE-LOSS	FOCAL	1	THSD4
TCGA.AA.A010.01A	15	72057351	72069523	3	-1.9794	LARGE-LOSS	FOCAL	1	THSD4
TCGA.AG.3909.01A	15	72104636	72118929	5	-1.4116	LARGE-LOSS	FOCAL	2	"MYO9A,NR2E3"
TCGA.AA.A010.01A	15	72491944	72509707	10	-2.1966	LARGE-LOSS	FOCAL	1	PKM
TCGA.AA.A010.01A	15	72511258	72545720	10	-1.4857	LARGE-LOSS	FOCAL	2	"PARP6,PKM"
TCGA.AA.A010.01A	15	72546739	72580619	15	-2.4215	LARGE-LOSS	FOCAL	2	"CELF6,PARP6"
TCGA.AA.A00N.01A	15	72553850	72581153	10	-1.4597	LARGE-LOSS	FOCAL	2	"CELF6,PARP6"
TCGA.AG.3909.01A	15	72553850	72582253	10	-1.5429	LARGE-LOSS	FOCAL	2	"CELF6,PARP6"
TCGA.AA.A00N.01A	15	72690622	72700000	5	-1.4867	LARGE-LOSS	FOCAL	1	TMEM202
TCGA.AA.A010.01A	15	74000641	74043279	6	-1.378	LARGE-LOSS	FOCAL	2	"C15orf59,CD276"
TCGA.AG.3909.01A	15	74280893	74336522	14	-1.5381	LARGE-LOSS	FOCAL	2	"PML,STOML1"
TCGA.AG.4022	15	74909998	74919592	3	-4.0636	LARGE-LOSS	FOCAL	1	CLK3
TCGA.AA.A010.01A	15	75090550	75146858	41	-1.3354	LARGE-LOSS	FOCAL	5	"CPLX3,CSK,LMAN1L,SCAMP2,ULK3"
TCGA.AG.3909.01A	15	75183703	75221405	13	-1.4732	LARGE-LOSS	FOCAL	3	"COX5A,FAM219B,MPI"
TCGA.AG.A02G.01A	15	75644420	75644893	2	-7.2148	LARGE-LOSS	FOCAL	1	NEIL1
TCGA.AA.A00N.01A	15	75761060	75809562	9	-1.7465	LARGE-LOSS	FOCAL	1	PTPN9
TCGA.AA.A010.01A	15	75761060	75809562	9	-2.3765	LARGE-LOSS	FOCAL	1	PTPN9
TCGA.CK.5914.01A	15	75762974	75801207	6	-1.5201	LARGE-LOSS	FOCAL	1	PTPN9
TCGA.A6.3808.01A	15	75969992	75985458	9	-2.8647	LARGE-LOSS	FOCAL	1	CSPG4
TCGA.CM.5348	15	76510072	76515119	3	-3.778	LARGE-LOSS	FOCAL	1	ETFA
TCGA.A6.3808.01A	15	77287842	77348358	20	-1.6156	LARGE-LOSS	FOCAL	2	"PSTPIP1,TSPAN3"
TCGA.AA.A010.01A	15	77339145	77348358	6	-2.605	LARGE-LOSS	FOCAL	1	TSPAN3
TCGA.EI.6513	15	77622005	77802790	26	-3.9626	LARGE-LOSS	FOCAL	2	"HMG20A,PEAK1"
TCGA.AA.A010.01A	15	78337195	78386401	6	-1.8723	LARGE-LOSS	FOCAL	2	"SH2D7,TBC1D2B"
TCGA.AG.3909.01A	15	78415988	78463738	11	-1.3989	LARGE-LOSS	FOCAL	3	"ACSBG1,CIB2,IDH3A"
TCGA.AA.A010.01A	15	78557051	78582243	13	-1.9909	LARGE-LOSS	FOCAL	2	"DNAJA4,WDR61"
TCGA.AG.3909.01A	15	78558529	78587935	16	-1.4029	LARGE-LOSS	FOCAL	2	"DNAJA4,WDR61"
TCGA.AA.A00N.01A	15	78558529	78732097	22	-1.3881	LARGE-LOSS	FOCAL	4	"CRABP1,DNAJA4,IREB2,WDR61"
TCGA.AG.3909.01A	15	78789421	78841085	14	-2.3299	LARGE-LOSS	FOCAL	3	"HYKK,IREB2,PSMA4"
TCGA.AA.A00N.01A	15	78805384	78841085	13	-2.3097	LARGE-LOSS	FOCAL	2	"HYKK,PSMA4"
TCGA.AG.A02G.01A	15	78834171	78837159	5	-4.9246	LARGE-LOSS	FOCAL	1	PSMA4
TCGA.AG.3909.01A	15	78909328	78927824	7	-1.4674	LARGE-LOSS	FOCAL	2	"CHRNA3,CHRNB4"
TCGA.AA.3982	15	79877896	79891749	11	-1.4935	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	15	80639402	80643625	5	-1.4961	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	15	81427567	81440629	6	-1.6689	LARGE-LOSS	FOCAL	1	C15orf26
TCGA.D5.6535	15	81996244	82001613	3	-6.2355	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	15	82544974	83222576	12	-1.3844	LARGE-LOSS	FOCAL	6	"CPEB1,EFTUD1,GOLGA6L10,GOLGA6L9,RPS17,SAXO2"
TCGA.A6.3808.01A	15	83448907	83495454	11	-2.7674	LARGE-LOSS	FOCAL	2	"FSD2,WHAMM"
TCGA.AA.A00N.01A	15	83657734	83678938	7	-2.0131	LARGE-LOSS	FOCAL	2	"C15orf40,FAM103A1"
TCGA.AA.A010.01A	15	83876027	83936833	6	-2.2989	LARGE-LOSS	FOCAL	2	"BNC1,HDGFRP3"
TCGA.AG.3909.01A	15	85186689	85230826	14	-1.4967	LARGE-LOSS	FOCAL	3	"NMB,SEC11A,WDR73"
TCGA.AA.3872	15	87942450	87944953	3	-2.4461	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	15	88036773	88040268	4	-1.5897	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3994	15	88760198	88761793	3	-4.0201	LARGE-LOSS	FOCAL	1	NTRK3
TCGA.AA.A02F.01A	15	89008790	89011162	4	-4.3004	LARGE-LOSS	FOCAL	2	"MRPL46,MRPS11"
TCGA.AA.A00N.01A	15	89056150	89151287	6	-1.5064	LARGE-LOSS	FOCAL	1	DET1
TCGA.AG.3909.01A	15	89059966	89151287	5	-1.756	LARGE-LOSS	FOCAL	1	DET1
TCGA.CK.5914.01A	15	89059966	89151287	5	-1.3229	LARGE-LOSS	FOCAL	1	DET1
TCGA.AZ.4681	15	89083313	89106325	3	-6.9245	LARGE-LOSS	FOCAL	1	DET1
TCGA.AG.3909.01A	15	89424598	89452981	8	-1.377	LARGE-LOSS	FOCAL	2	"HAPLN3,MFGE8"
TCGA.AA.A00N.01A	15	89833387	89843473	7	-1.8894	LARGE-LOSS	FOCAL	1	FANCI
TCGA.AG.3909.01A	15	89833387	89850657	12	-1.5554	LARGE-LOSS	FOCAL	1	FANCI
TCGA.AA.A00N.01A	15	89844510	89859563	10	-1.3773	LARGE-LOSS	FOCAL	2	"FANCI,POLG"
TCGA.AA.A00N.01A	15	90159581	90170159	9	-1.4584	LARGE-LOSS	FOCAL	1	TICRR
TCGA.AA.A010.01A	15	90188207	90229613	20	-2.0699	LARGE-LOSS	FOCAL	3	"KIF7,PEX11A,PLIN1"
TCGA.AA.A010.01A	15	91418954	91438606	25	-2.1322	LARGE-LOSS	FOCAL	2	"FES,FURIN"
TCGA.AA.A010.01A	15	91447406	91453299	8	-2.78	LARGE-LOSS	FOCAL	1	MAN2A2
TCGA.AA.A010.01A	15	91453710	91474466	13	-1.9381	LARGE-LOSS	FOCAL	3	"HDDC3,MAN2A2,UNC45A"
TCGA.AA.A00N.01A	15	91503536	91527871	16	-1.8111	LARGE-LOSS	FOCAL	2	"PRC1,RCCD1"
TCGA.AG.3909.01A	15	91504800	91527871	14	-2.224	LARGE-LOSS	FOCAL	2	"PRC1,RCCD1"
TCGA.AA.3982	15	91849171	91863779	7	-1.5794	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	15	91863692	91863779	3	-1.3233	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	15	91954500	91955914	3	-1.7546	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	15	92052113	92055286	5	-1.5346	LARGE-LOSS	FOCAL	0	None
TCGA.CM.4752	15	93564971	93571795	3	-4.5374	LARGE-LOSS	FOCAL	1	CHD2
TCGA.AA.3870	15	94362413	94362949	3	-1.8681	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	15	94362413	94362949	3	-4.4985	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3973	15	94362413	94362949	3	-7.2477	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	15	94362413	94362949	3	-1.9075	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	15	94362602	94365843	3	-1.4262	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	15	94362602	94365843	3	-2.1014	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A0XA	15	94781903	94824831	19	-3.9786	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	15	95666753	95687946	16	-1.86235	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	15	96017544	96025817	8	-1.87035	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6322	15	96052408	96983508	417	-2.0624	LARGE-LOSS	FOCAL	1	NR2F2
TCGA.AA.3941	15	96143558	96149035	3	-5.5184	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	15	96146413	96151913	4	-1.5409	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	15	96869460	96880544	5	-2.4815	LARGE-LOSS	FOCAL	1	NR2F2
TCGA.AF.3914.01A	15	96869460	96880544	4	-1.7533	LARGE-LOSS	FOCAL	1	NR2F2
TCGA.AA.3850	15	97175523	97185030	3	-2.10565	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	15	98039983	98040886	6	-2.2095	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	15	98508767	98514293	7	-2.1201	LARGE-LOSS	FOCAL	1	ARRDC4
TCGA.AA.A02H.01A	15	99451893	99459853	5	-2.2888	LARGE-LOSS	FOCAL	1	IGF1R
TCGA.A6.A56B	15	99907718	100646978	262	-1.3398	LARGE-LOSS	FOCAL	4	"ADAMTS17,LRRC28,LYSMD4,MEF2A"
TCGA.NH.A8F7	15	100543066	100544112	3	-2.9723	LARGE-LOSS	FOCAL	1	ADAMTS17
TCGA.AG.4021	15	100975212	100978976	3	-2.0109	LARGE-LOSS	FOCAL	1	CERS3
TCGA.AA.A010.01A	15	101420066	101464790	14	-2.1178	LARGE-LOSS	FOCAL	2	"ALDH1A3,LRRK1"
TCGA.AG.A01N.01A	15	101432668	101433080	2	-3.982	LARGE-LOSS	FOCAL	1	ALDH1A3
TCGA.AG.3909.01A	15	101595104	101815423	14	-1.4891	LARGE-LOSS	FOCAL	3	"CHSY1,LRRK1,VIMP"
TCGA.AA.A00N.01A	15	101812928	101833233	12	-2.2584	LARGE-LOSS	FOCAL	2	"SNRPA1,VIMP"
TCGA.CK.5914.01A	15	101812928	101833233	12	-1.3573	LARGE-LOSS	FOCAL	2	"SNRPA1,VIMP"
TCGA.AG.3909.01A	15	101816694	101833233	9	-2.2553	LARGE-LOSS	FOCAL	2	"SNRPA1,VIMP"
TCGA.AA.3531	15	101927876	101928784	4	-1.4266	LARGE-LOSS	FOCAL	1	PCSK6
TCGA.AA.A00N.01A	15	102185246	102201874	9	-1.58	LARGE-LOSS	FOCAL	2	"TARSL2,TM2D3"
TCGA.AG.3909.01A	15	102186878	102197073	5	-1.9523	LARGE-LOSS	FOCAL	2	"TARSL2,TM2D3"
TCGA.AA.A00N.01A	15	102248948	102263253	5	-1.7503	LARGE-LOSS	FOCAL	1	TARSL2
TCGA.AA.A00N.01A	16	240455	309443	11	-1.4444	LARGE-LOSS	FOCAL	2	"ITFG3,LUC7L"
TCGA.AA.A010.01A	16	304401	339398	32	-2.15	LARGE-LOSS	FOCAL	5	"ARHGDIG,AXIN1,ITFG3,PDIA2,RGS11"
TCGA.AA.A010.01A	16	396101	461360	32	-2.2138	LARGE-LOSS	FOCAL	5	"AXIN1,DECR2,MRPL28,NME4,TMEM8A"
TCGA.AA.A010.01A	16	560619	668139	29	-1.893	LARGE-LOSS	FOCAL	6	"CAPN15,NHLRC4,PIGQ,PRR35,RAB11FIP3,RAB40C"
TCGA.AA.A010.01A	16	675374	730495	47	-1.4108	LARGE-LOSS	FOCAL	8	"C16orf13,FAM195A,RAB40C,RHBDL1,RHOT2,STUB1,WDR90,WFIKKN1"
TCGA.AA.A010.01A	16	960889	1266885	36	-1.4224	LARGE-LOSS	FOCAL	5	"C1QTNF8,CACNA1H,LMF1,SOX8,SSTR5"
TCGA.AG.A01Y	16	1073551	1088796	3	-1.6015	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AAT4	16	1253528	1320592	4	-3.7673	LARGE-LOSS	FOCAL	5	"CACNA1H,TPSAB1,TPSB2,TPSD1,TPSG1"
TCGA.AA.A010.01A	16	1363987	1374675	5	-2.4263	LARGE-LOSS	FOCAL	1	UBE2I
TCGA.AA.A010.01A	16	1384614	1486386	42	-1.3931	LARGE-LOSS	FOCAL	6	"BAIAP3,C16orf91,CCDC154,GNPTG,TSR3,UNKL"
TCGA.AA.A029.01A	16	1505094	1507200	2	-7.0729	LARGE-LOSS	FOCAL	1	CLCN7
TCGA.AA.A010.01A	16	1630709	1682163	13	-1.9893	LARGE-LOSS	FOCAL	2	"CRAMP1L,IFT140"
TCGA.AA.A010.01A	16	1867151	1891814	11	-2.4668	LARGE-LOSS	FOCAL	3	"FAHD1,HAGH,MEIOB"
TCGA.AA.A00N.01A	16	1877234	1918054	14	-1.52	LARGE-LOSS	FOCAL	2	"FAHD1,MEIOB"
TCGA.AA.A010.01A	16	2029823	2089943	26	-2.0533	LARGE-LOSS	FOCAL	7	"GFER,NOXO1,NPW,NTHL1,SLC9A3R2,SYNGR3,ZNF598"
TCGA.AA.A010.01A	16	2126032	2134191	10	-1.994	LARGE-LOSS	FOCAL	1	TSC2
TCGA.AA.A010.01A	16	2134932	2152812	20	-2.4597	LARGE-LOSS	FOCAL	2	"PKD1,TSC2"
TCGA.AA.A010.01A	16	2153218	2198755	15	-1.6209	LARGE-LOSS	FOCAL	2	"PKD1,RAB26"
TCGA.AA.A010.01A	16	2199895	2282789	39	-2.3545	LARGE-LOSS	FOCAL	7	"BRICD5,CASKIN1,E4F1,MLST8,PGP,RAB26,TRAF7"
TCGA.AA.A010.01A	16	2283431	2314528	18	-1.3564	LARGE-LOSS	FOCAL	4	"DNASE1L2,E4F1,ECI1,RNPS1"
TCGA.AA.A010.01A	16	2481093	2611436	42	-1.3513	LARGE-LOSS	FOCAL	8	"AMDHD2,ATP6V0C,C16orf59,CCNF,CEMP1,NTN3,PDPK1,TBC1D24"
TCGA.AG.A01N.01A	16	2487102	2489312	3	-4.4454	LARGE-LOSS	FOCAL	1	CCNF
TCGA.AG.4009.01A	16	2569212	2580281	6	-1.5338	LARGE-LOSS	FOCAL	3	"AMDHD2,ATP6V0C,CEMP1"
TCGA.AA.A00N.01A	16	2807426	2814760	8	-1.8575	LARGE-LOSS	FOCAL	1	SRRM2
TCGA.AA.A010.01A	16	2807426	2836439	21	-2.1482	LARGE-LOSS	FOCAL	3	"PRSS33,SRRM2,TCEB2"
TCGA.G4.6626	16	3117353	3123685	3	-2.9572	LARGE-LOSS	FOCAL	1	IL32
TCGA.AA.A00N.01A	16	3273891	3294171	7	-1.593	LARGE-LOSS	FOCAL	2	"MEFV,ZNF200"
TCGA.AA.A00N.01A	16	3335619	3367162	9	-1.9422	LARGE-LOSS	FOCAL	3	"TIGD7,ZNF263,ZNF75A"
TCGA.AA.A029.01A	16	3794847	3795218	2	-8.1275	LARGE-LOSS	FOCAL	1	CREBBP
TCGA.A6.3808.01A	16	4383296	4438493	24	-1.6915	LARGE-LOSS	FOCAL	5	"CORO7,CORO7-PAM16,GLIS2,PAM16,VASN"
TCGA.AA.A010.01A	16	4829658	4895028	24	-1.7867	LARGE-LOSS	FOCAL	4	"GLYR1,ROGDI,SEPT12,SMIM22"
TCGA.F5.6812	16	4878587	4894415	3	-1.4489	LARGE-LOSS	FOCAL	1	GLYR1
TCGA.AA.A01I.01A	16	4881941	4882725	2	-5.4801	LARGE-LOSS	FOCAL	1	GLYR1
TCGA.AA.A01Q.01A	16	4937095	4938923	3	-1.5214	LARGE-LOSS	FOCAL	1	PPL
TCGA.A6.3808.01A	16	5128707	5145487	6	-2.4817	LARGE-LOSS	FOCAL	2	"ALG1,EEF2KMT"
TCGA.AG.3726	16	5378841	5381052	3	-1.4962	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5913	16	5804159	6225026	333	-2.3933	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A1D6	16	5862163	6147644	227	-4.2875	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3592	16	5870605	5975882	88	-4.2807	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3592	16	5984224	6452535	368	-1.3786	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28F	16	6012105	6042618	24	-1.7618	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6626	16	6036357	6299573	199	-2.0065	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3860	16	6085402	7195140	915	-2.8409	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.QG.A5YV	16	6093291	6116417	25	-1.7065	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.A026	16	6107420	6225026	106	-1.5744	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.T9.A92H	16	6115381	6143993	36	-1.5807	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6294	16	6115381	6182614	75	-3.1368	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.T9.A92H	16	6180906	7095569	725	-3.4748	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	6181343	6207388	16	-1.3677	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02O	16	6191061	6331740	88	-4.2991	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.CA.5796	16	6238152	6393039	118	-1.4581	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6535	16	6263632	6282072	17	-2.9433	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AD.A5EK	16	6266524	6321976	52	-3.5911	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6294	16	6281262	6873787	518	-3.1921	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DC.4745	16	6281604	6496332	187	-4.1202	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DC.6682	16	6299573	7009581	607	-1.3909	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6748	16	6312951	6495490	155	-1.361	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3898	16	6314934	6626534	259	-1.8359	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6172	16	6318192	6404836	71	-1.4224	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5913	16	6330855	6334990	3	-1.7433	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6169	16	6331740	6778689	398	-2.0016	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	6337976	6338283	4	-4.14485	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	6338455	6341291	4	-1.36865	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A1DB	16	6344587	7047356	588	-3.6767	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DY.A1DF	16	6360448	6431921	68	-1.4323	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4308	16	6360448	6610702	219	-2.2554	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6626	16	6360448	7081961	593	-2.1643	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AF.3913	16	6364934	7196613	692	-2.0301	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6377498	6425751	46	-2.0869	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	6382433	6400687	17	-2.1825	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6172	16	6408153	7133247	591	-2.3792	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6310	16	6413743	6835413	391	-1.5116	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3664	16	6415496	6489262	69	-3.9795	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AU.6004	16	6415895	6417176	3	-4.5126	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6605	16	6416632	6417205	3	-2.2732	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6426716	6552164	95	-3.7104	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.4105	16	6428238	6954273	449	-1.8465	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	6439556	6767191	296	-1.4808	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AF.4110	16	6450462	6868510	369	-1.574	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3518	16	6478897	6505290	22	-3.346	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A022	16	6481457	6534935	38	-2.8277	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6644	16	6489158	6626534	115	-1.7265	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6653	16	6531393	6534935	7	-3.2196	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3543	16	6534368	6623078	88	-3.2064	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3956	16	6534368	6777524	235	-1.4357	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4615	16	6547043	6583487	45	-2.7412	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6513	16	6547043	6782735	241	-4.265	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6552266	6663643	112	-6.3272	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3818	16	6561864	6858922	275	-4.1074	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02O	16	6566663	6840764	268	-3.8384	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6535	16	6566663	7009581	386	-2.5367	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A1D6	16	6570963	6649460	83	-4.203	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6926	16	6579244	6668587	98	-1.6141	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.QG.A5YX	16	6580460	6796865	209	-5.0966	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6581745	6618259	38	-3.5348	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	6582938	6585645	4	-1.50595	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28K	16	6583487	6611882	31	-4.3654	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.D5.5539	16	6585645	6777524	185	-1.9902	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6653	16	6588801	6590118	3	-5.2559	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3885	16	6595897	6607677	13	-1.5349	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.3807	16	6597698	6667328	67	-1.3481	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4614	16	6607677	6610702	3	-3.7744	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AD.A5EK	16	6610702	6684027	78	-3.4882	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4308	16	6611882	6623078	7	-7.5829	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4614	16	6611882	6623078	7	-7.9493	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3685	16	6611882	6772947	151	-2.5093	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3893	16	6611882	6778689	158	-1.9993	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3883	16	6618259	6623078	6	-1.476	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DC.4745	16	6618259	6706075	86	-4.2214	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6746	16	6618259	6868872	229	-4.7443	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3660	16	6623078	6731057	102	-2.687	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4308	16	6626498	6958847	292	-2.1738	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.NH.A50U	16	6640693	6816350	184	-1.3648	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6653	16	6640693	7186901	451	-3.3626	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AF.5654	16	6654899	6658686	3	-7.6861	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6536	16	6658311	6724105	60	-3.0754	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AF.5654	16	6663391	6668416	11	-2.4402	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6663391	6668416	11	-2.4907	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3844	16	6663618	6724105	57	-1.5055	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6664053	6693006	30	-1.7982	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6675912	6739583	50	-3.0767	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3726	16	6682150	7295972	518	-2.719	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6323	16	6692979	6724105	27	-2.3681	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6697124	6708995	8	-7.5828	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.5656	16	6699260	6719892	20	-2.5079	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.QL.A97D	16	6699260	6868285	144	-2.266	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3885	16	6699354	6916450	182	-1.4708	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3666	16	6706075	6868872	144	-1.5513	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3543	16	6708811	6916450	180	-3.4321	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6709030	6752990	39	-1.9198	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.F5.6813	16	6710468	6793932	79	-1.6532	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4615	16	6723881	6948174	184	-2.2893	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DY.A1DF	16	6733692	6868285	120	-1.5196	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.CK.4951	16	6748455	6811870	73	-1.9253	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6754929	6928433	150	-5.8006	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3896	16	6756395	6964796	178	-1.6534	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	6768476	6798094	27	-5.0337	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	6777195	6778870	7	-1.62685	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6644	16	6793932	6838955	49	-1.5133	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3952	16	6793932	7170958	293	-2.2345	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.QG.A5YX	16	6797814	6876457	59	-1.7741	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	6800649	6802434	5	-1.89005	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	6800649	6820959	30	-1.3683	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2681	16	6820897	6978473	119	-1.6248	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	6824822	7138710	211	-3.9967	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6536	16	6865107	6896341	22	-3.1691	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.QG.A5YX	16	6876540	6927384	39	-5.1366	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.4107	16	6898961	6900307	3	-2.2192	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6294	16	6926260	6926396	3	-1.652	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6294	16	6927384	7064662	91	-3.3673	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28F	16	6978473	7023873	23	-1.9453	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6643	16	6989148	7092543	52	-2.2322	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3725	16	7145566	7369265	224	-1.4074	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	7146476	7152169	9	-1.6577	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	7167534	7170087	5	-1.95635	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3666	16	7183989	7257596	78	-1.3369	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2681	16	7340428	7390452	26	-1.5085	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3982	16	7379338	7381298	3	-1.3484	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	7415951	7416230	3	-2.5112	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6923	16	7631318	7632229	3	-3.9394	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	7736409	7738938	4	-1.82235	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3982	16	7737004	7738938	3	-3.8313	LARGE-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	7906709	7908023	3	-2.41155	LARGE-LOSS	FOCAL	0	None
TCGA.EI.6513	16	8329326	8329512	3	-1.4847	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	16	8722556	8739883	8	-2.0421	LARGE-LOSS	FOCAL	1	METTL22
TCGA.AG.A023.01A	16	8734913	8736273	3	-5.3147	LARGE-LOSS	FOCAL	1	METTL22
TCGA.G4.6294	16	10789866	10797277	3	-1.7117	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	16	14935140	15100224	32	-2.3694	LARGE-LOSS	FOCAL	3	"NOMO1,NPIPA1,PDXDC1"
TCGA.AA.A010.01A	16	15091590	15123771	14	-2.0281	LARGE-LOSS	FOCAL	1	PDXDC1
TCGA.AA.A010.01A	16	15138171	15170384	12	-1.3965	LARGE-LOSS	FOCAL	3	"NTAN1,PDXDC1,RRN3"
TCGA.A6.3808.01A	16	15156995	15186319	15	-2.9132	LARGE-LOSS	FOCAL	2	"PDXDC1,RRN3"
TCGA.AA.A01I.01A	16	15813967	15815272	3	-3.3551	LARGE-LOSS	FOCAL	2	"MYH11,NDE1"
TCGA.AA.A00N.01A	16	15961239	15977855	4	-1.47	LARGE-LOSS	FOCAL	1	FOPNL
TCGA.AM.5820	16	17411706	18768692	275	-2.8989	LARGE-LOSS	FOCAL	4	"NOMO2,NPIPA7,NPIPA8,XYLT1"
TCGA.AA.A00N.01A	16	18562710	18809985	13	-1.3722	LARGE-LOSS	FOCAL	3	"ARL6IP1,NOMO2,RPS15A"
TCGA.AA.A01I.01A	16	18809209	18809985	2	-4.8076	LARGE-LOSS	FOCAL	1	ARL6IP1
TCGA.A6.3808.01A	16	18875297	18908214	12	-2.8305	LARGE-LOSS	FOCAL	1	SMG1
TCGA.AA.A00N.01A	16	19070676	19184021	15	-1.3698	LARGE-LOSS	FOCAL	4	"COQ7,ITPRIPL2,SYT17,TMC7"
TCGA.AA.A010.01A	16	19125746	19132077	5	-2.4961	LARGE-LOSS	FOCAL	1	ITPRIPL2
TCGA.AA.A00N.01A	16	21327180	21690260	17	-1.3431	LARGE-LOSS	FOCAL	4	"IGSF6,METTL9,NPIPB3,OTOA"
TCGA.F4.6808	16	21534303	21585791	3	-3.8151	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6888	16	22626346	22704519	9	-2.7021	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6529	16	22626346	22704519	9	-2.7446	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	23404505	23424727	6	-1.3742	LARGE-LOSS	FOCAL	1	COG7
TCGA.AA.A00N.01A	16	23570752	23598470	8	-1.9281	LARGE-LOSS	FOCAL	2	"NDUFAB1,UBFD1"
TCGA.AA.A010.01A	16	23847446	23848621	2	-2.5058	LARGE-LOSS	FOCAL	1	PRKCB
TCGA.AA.A00N.01A	16	24551896	24769571	19	-1.4995	LARGE-LOSS	FOCAL	2	"RBBP6,TNRC6A"
TCGA.AA.A010.01A	16	24741556	24769571	3	-1.8834	LARGE-LOSS	FOCAL	1	TNRC6A
TCGA.QG.A5Z1	16	27381711	27384730	3	-4.277	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	16	28328692	28403036	4	-1.9088	LARGE-LOSS	FOCAL	4	"EIF3C,EIF3CL,NPIPB6,SBK1"
TCGA.AA.3509.01A	16	28711489	28712543	2	-3.3611	LARGE-LOSS	FOCAL	1	EIF3C
TCGA.AA.A00N.01A	16	28836605	28844473	10	-1.5656	LARGE-LOSS	FOCAL	1	ATXN2L
TCGA.DM.A1D7	16	29232676	29250914	3	-3.7874	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1H8	16	29232676	29250914	3	-3.4897	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AATA	16	29358350	29580610	3	-4.007	LARGE-LOSS	FOCAL	6	"BOLA2,BOLA2B,SLX1A,SLX1B,SULT1A3,SULT1A4"
TCGA.AA.A010.01A	16	29802016	29819874	12	-2.6212	LARGE-LOSS	FOCAL	2	"KIF22,MAZ"
TCGA.A6.3808.01A	16	29811197	29820813	9	-2.1199	LARGE-LOSS	FOCAL	2	"KIF22,MAZ"
TCGA.AF.3914.01A	16	29814048	29815252	3	-1.7954	LARGE-LOSS	FOCAL	1	KIF22
TCGA.AA.A010.01A	16	29820813	29830854	7	-2.0658	LARGE-LOSS	FOCAL	3	"MAZ,PAGR1,PRRT2"
TCGA.AF.3914.01A	16	30128942	30197869	6	-1.6903	LARGE-LOSS	FOCAL	2	"CORO1A,MAPK3"
TCGA.AA.A010.01A	16	30196483	30199049	4	-2.3046	LARGE-LOSS	FOCAL	1	CORO1A
TCGA.AA.A010.01A	16	30365483	30440338	25	-1.921	LARGE-LOSS	FOCAL	7	"CD2BP2,DCTPP1,MYLPF,SEPT1,TBC1D10B,ZNF48,ZNF771"
TCGA.AA.A010.01A	16	30662902	30680391	21	-1.7351	LARGE-LOSS	FOCAL	2	"FBRS,PRR14"
TCGA.A6.3808.01A	16	30771577	30783154	13	-1.849	LARGE-LOSS	FOCAL	3	"C16orf93,PHKG2,RNF40"
TCGA.AA.A010.01A	16	30900127	31021603	43	-2.1911	LARGE-LOSS	FOCAL	7	"BCL7C,CTF1,FBXL19,HSD3B7,ORAI3,SETD1A,STX1B"
TCGA.AA.A00N.01A	16	31193630	31202638	12	-1.8557	LARGE-LOSS	FOCAL	1	FUS
TCGA.AG.3909.01A	16	31198063	31202638	8	-1.4359	LARGE-LOSS	FOCAL	1	FUS
TCGA.CK.5914.01A	16	31198063	31202638	8	-1.3355	LARGE-LOSS	FOCAL	1	FUS
TCGA.AA.A010.01A	16	31425721	31429357	5	-1.8534	LARGE-LOSS	FOCAL	1	ITGAD
TCGA.AA.A010.01A	16	31434396	31447675	8	-2.1623	LARGE-LOSS	FOCAL	3	"COX6A2,ITGAD,ZNF843"
TCGA.AG.4009.01A	16	31473212	31485420	6	-1.557	LARGE-LOSS	FOCAL	2	"ARMC5,TGFB1I1"
TCGA.AF.3914.01A	16	31475677	31485420	4	-1.5787	LARGE-LOSS	FOCAL	2	"ARMC5,TGFB1I1"
TCGA.AA.3941	16	33550090	34197817	4	-3.7707	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	46649846	46743413	29	-1.599	LARGE-LOSS	FOCAL	4	"MYLK3,ORC6,SHCBP1,VPS35"
TCGA.AA.A010.01A	16	46990889	47005736	7	-1.7905	LARGE-LOSS	FOCAL	1	DNAJA2
TCGA.AA.A010.01A	16	47156519	47196402	9	-2.7125	LARGE-LOSS	FOCAL	2	"ITFG1,NETO2"
TCGA.AA.A00N.01A	16	48385475	48399256	5	-1.9133	LARGE-LOSS	FOCAL	2	"LONP2,SIAH1"
TCGA.AA.3989	16	48905139	48907237	3	-1.5073	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	49856497	50112612	13	-1.4376	LARGE-LOSS	FOCAL	3	"CNEP1R1,HEATR3,ZNF423"
TCGA.AA.A010.01A	16	50383517	50583282	7	-2.4677	LARGE-LOSS	FOCAL	2	"BRD7,NKD1"
TCGA.AA.A010.01A	16	51170995	51185038	4	-1.919	LARGE-LOSS	FOCAL	1	SALL1
TCGA.AA.3956	16	51772461	51773228	3	-1.3539	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	53472911	53480935	3	-1.7906	LARGE-LOSS	FOCAL	1	RBL2
TCGA.AA.A00N.01A	16	53720333	53734503	5	-1.8471	LARGE-LOSS	FOCAL	1	RPGRIP1L
TCGA.AA.3982	16	53806279	53808257	4	-1.4268	LARGE-LOSS	FOCAL	1	FTO
TCGA.AA.A010.01A	16	54317579	54966952	7	-1.746	LARGE-LOSS	FOCAL	2	"IRX3,IRX5"
TCGA.D5.5538	16	54410446	54419631	4	-1.3284	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3558	16	55906357	55906486	3	-1.4047	LARGE-LOSS	FOCAL	1	CES5A
TCGA.AA.A010.01A	16	56435603	56473517	11	-2.0267	LARGE-LOSS	FOCAL	2	"AMFR,NUDT21"
TCGA.AA.A01I.01A	16	56436850	56439040	3	-5.2824	LARGE-LOSS	FOCAL	1	AMFR
TCGA.AF.3914.01A	16	56436850	56439040	3	-1.8467	LARGE-LOSS	FOCAL	1	AMFR
TCGA.A6.3808.01A	16	56438772	56468196	7	-2.538	LARGE-LOSS	FOCAL	2	"AMFR,NUDT21"
TCGA.AA.A010.01A	16	56700735	56832333	12	-1.7	LARGE-LOSS	FOCAL	4	"MT1G,MT1H,MT1X,NUP93"
TCGA.AA.A010.01A	16	57104410	57144603	11	-1.452	LARGE-LOSS	FOCAL	2	"CPNE2,NLRC5"
TCGA.AA.A01I.01A	16	57689756	57691233	4	-3.9515	LARGE-LOSS	FOCAL	1	ADGRG1
TCGA.A6.3808.01A	16	57738737	57764805	12	-2.2007	LARGE-LOSS	FOCAL	1	DRC7
TCGA.AG.A023.01A	16	57784688	57785811	4	-3.8649	LARGE-LOSS	FOCAL	1	KATNB1
TCGA.AA.A010.01A	16	58197917	58231490	11	-1.5185	LARGE-LOSS	FOCAL	1	CSNK2A2
TCGA.AA.A010.01A	16	58537671	58549648	9	-1.3649	LARGE-LOSS	FOCAL	2	"NDRG4,SETD6"
TCGA.AA.A010.01A	16	58550117	58562370	10	-2.747	LARGE-LOSS	FOCAL	2	"CNOT1,SETD6"
TCGA.AA.A00N.01A	16	58550685	58564100	10	-1.6587	LARGE-LOSS	FOCAL	2	"CNOT1,SETD6"
TCGA.AA.A010.01A	16	58564100	58580174	12	-1.547	LARGE-LOSS	FOCAL	1	CNOT1
TCGA.A6.3808.01A	16	58615202	58622652	7	-2.8882	LARGE-LOSS	FOCAL	1	CNOT1
TCGA.AA.3872	16	59921261	59922119	4	-2.407	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	16	59921604	59922119	3	-4.7859	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	16	61634944	61635296	3	-6.9001	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	16	61744820	61762274	7	-7.13195	LARGE-LOSS	FOCAL	1	CDH8
TCGA.AA.3941	16	61748627	61762274	6	-6.761	LARGE-LOSS	FOCAL	1	CDH8
TCGA.AA.3982	16	61748627	61765100	8	-2.6189	LARGE-LOSS	FOCAL	1	CDH8
TCGA.AA.3850	16	61797262	61883400	18	-2.58595	LARGE-LOSS	FOCAL	1	CDH8
TCGA.CI.6619	16	62029164	62035887	3	-3.8135	LARGE-LOSS	FOCAL	1	CDH8
TCGA.DM.A28H	16	62029164	62035887	3	-3.8699	LARGE-LOSS	FOCAL	1	CDH8
TCGA.T9.A92H	16	62784892	63072941	88	-1.5804	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3973	16	63428322	63433134	3	-2.5172	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3666	16	63767506	63769814	3	-1.4895	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	16	64813857	64822955	6	-2.3558	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3558	16	66062380	66062762	3	-1.5889	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	16	66115075	66115590	3	-1.6086	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	66575723	66610960	10	-1.924	LARGE-LOSS	FOCAL	4	"CKLF,CKLF-CMTM1,CMTM1,TK2"
TCGA.AA.A010.01A	16	66651134	66801269	20	-1.5213	LARGE-LOSS	FOCAL	3	"CCDC79,CMTM4,DYNC1LI2"
TCGA.AA.A00N.01A	16	66822020	66861874	21	-1.8793	LARGE-LOSS	FOCAL	2	"CCDC79,NAE1"
TCGA.AA.A00Z.01A	16	67000590	67208502	3	-2.3402	LARGE-LOSS	FOCAL	9	"B3GNT9,C16orf70,CBFB,CES3,CES4A,FBXL8,HSF4,NOL3,TRADD"
TCGA.AA.A01Q.01A	16	67218260	67231731	15	-1.3656	LARGE-LOSS	FOCAL	2	"E2F4,EXOC3L1"
TCGA.AF.3914.01A	16	67226617	67231731	7	-1.6705	LARGE-LOSS	FOCAL	1	E2F4
TCGA.AA.A010.01A	16	67399135	67404830	3	-1.3502	LARGE-LOSS	FOCAL	1	LRRC36
TCGA.AA.A010.01A	16	67409133	67424800	7	-2.1838	LARGE-LOSS	FOCAL	2	"LRRC36,TPPP3"
TCGA.AA.A010.01A	16	67428542	67487395	15	-1.6747	LARGE-LOSS	FOCAL	3	"ATP6V0D1,HSD11B2,ZDHHC1"
TCGA.AA.A010.01A	16	67572298	67579247	11	-1.6938	LARGE-LOSS	FOCAL	1	FAM65A
TCGA.AA.A010.01A	16	67670545	67683682	12	-2.1599	LARGE-LOSS	FOCAL	2	"CTCF,RLTPR"
TCGA.AA.A010.01A	16	67685058	67693120	9	-2.9586	LARGE-LOSS	FOCAL	2	"ACD,RLTPR"
TCGA.AA.A010.01A	16	67693614	67698868	6	-2.2567	LARGE-LOSS	FOCAL	3	"ACD,ENKD1,PARD6A"
TCGA.AA.A010.01A	16	67699947	67719313	6	-1.439	LARGE-LOSS	FOCAL	3	"C16orf86,ENKD1,GFOD2"
TCGA.AA.A029.01A	16	68112288	68112614	2	-7.7333	LARGE-LOSS	FOCAL	1	DUS2
TCGA.AA.A010.01A	16	68283142	68324270	8	-1.5705	LARGE-LOSS	FOCAL	2	"PLA2G15,SLC7A6"
TCGA.AA.A01I.01A	16	68712000	68712353	2	-4.3277	LARGE-LOSS	FOCAL	1	CDH3
TCGA.AA.A010.01A	16	69117337	69155279	8	-2.0168	LARGE-LOSS	FOCAL	3	"CHTF8,HAS3,TANGO6"
TCGA.AA.A010.01A	16	70286572	70298833	10	-2.563	LARGE-LOSS	FOCAL	1	AARS
TCGA.AA.A010.01A	16	70299393	70316485	9	-1.3405	LARGE-LOSS	FOCAL	1	AARS
TCGA.AA.A01I.01A	16	70389323	70389977	2	-7.2688	LARGE-LOSS	FOCAL	1	DDX19A
TCGA.AA.A010.01A	16	70708202	70732503	13	-2.3979	LARGE-LOSS	FOCAL	2	"MTSS1L,VAC14"
TCGA.A6.3809	16	70869420	71022528	52	-1.8158	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3811	16	70873764	70883844	3	-6.8448	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3530	16	70873764	70884561	4	-1.7092	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3844	16	70873764	70884561	4	-2.1662	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3850	16	70873764	70884561	4	-1.81005	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3941	16	70873764	70884561	4	-3.7324	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3982	16	70874791	70884561	3	-6.9668	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3681	16	70884561	70891235	3	-6.3029	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3858	16	70884561	70891235	3	-3.8621	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.A6.2672	16	70884561	71048301	54	-3.7952	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3837	16	70884561	71048301	58	-1.5685	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.A6.5665	16	70884561	71065310	61	-2.9609	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AG.3612	16	70884561	71184897	77	-1.6703	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.CM.6164	16	70894602	70901157	9	-2.2344	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.A6.5661	16	70894602	71028622	48	-3.5738	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.CM.6161	16	70930636	70994201	16	-3.0893	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3814	16	71002686	71010355	3	-3.7949	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AG.3878	16	71002686	71010355	3	-6.452	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3530	16	71002686	71011390	4	-3.8948	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3854	16	71002686	71011390	4	-4.3296	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3858	16	71010355	71022189	5	-1.4229	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3833	16	71018781	71022528	3	-4.3894	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.CK.6748	16	71018781	71022528	3	-5.0138	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AG.A02N	16	71066842	71068142	3	-5.2573	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3872	16	71113485	71135471	3	-2.5372	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3850	16	71121446	71143486	4	-2.19015	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3530	16	71121446	71184897	8	-2.5159	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3941	16	71121446	71184897	8	-1.5346	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.NH.A5IV	16	71143486	71157422	3	-5.2577	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.CM.6164	16	71143486	71166555	3	-2.9442	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3850	16	71149659	71166555	3	-6.59035	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AG.A02N	16	71149659	71166555	3	-2.0194	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.DM.A1DB	16	71191404	71200048	3	-4.036	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.CM.5344	16	71196152	71202488	3	-5.8554	LARGE-LOSS	FOCAL	1	HYDIN
TCGA.AA.3850	16	71315077	71330118	4	-1.65715	LARGE-LOSS	FOCAL	1	CMTR2
TCGA.AA.A010.01A	16	71736454	71783781	10	-1.3362	LARGE-LOSS	FOCAL	2	"AP1G1,PHLPP2"
TCGA.AA.A010.01A	16	72821036	72992464	13	-1.6373	LARGE-LOSS	FOCAL	1	ZFHX3
TCGA.AA.3864	16	73233831	73256814	3	-1.6206	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	16	73708391	73712091	3	-2.00285	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	16	74446633	74455023	4	-1.6025	LARGE-LOSS	FOCAL	1	CLEC18B
TCGA.AA.A00N.01A	16	75565240	75579676	6	-1.6496	LARGE-LOSS	FOCAL	2	"CHST5,TMEM231"
TCGA.AM.5820	16	76009327	76009780	3	-1.9559	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3913	16	76107316	76111733	3	-1.6746	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	16	76445022	76448756	3	-1.4802	LARGE-LOSS	FOCAL	1	CNTNAP4
TCGA.AA.A00N.01A	16	77231963	77245042	7	-1.3404	LARGE-LOSS	FOCAL	2	"MON1B,SYCE1L"
TCGA.AY.6197	16	77594817	77595364	4	-1.6359	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5348	16	77763254	77766639	3	-4.2274	LARGE-LOSS	FOCAL	1	NUDT7
TCGA.DM.A1DA	16	78156087	78271065	60	-6.6165	LARGE-LOSS	FOCAL	1	WWOX
TCGA.A6.6653	16	78596151	78854227	203	-1.738	LARGE-LOSS	FOCAL	1	WWOX
TCGA.G4.6586	16	78614426	78707187	70	-2.0085	LARGE-LOSS	FOCAL	1	WWOX
TCGA.AA.3854	16	78621412	78622632	3	-1.4851	LARGE-LOSS	FOCAL	1	WWOX
TCGA.AA.3845	16	78654818	78854069	169	-1.5158	LARGE-LOSS	FOCAL	1	WWOX
TCGA.DM.A0XD	16	78749340	78781845	23	-2.6537	LARGE-LOSS	FOCAL	1	WWOX
TCGA.EI.6507	16	78949965	78950157	3	-3.9282	LARGE-LOSS	FOCAL	1	WWOX
TCGA.AY.5543	16	78953932	78959292	3	-4.3678	LARGE-LOSS	FOCAL	1	WWOX
TCGA.F5.6814	16	78953932	78959292	3	-1.875	LARGE-LOSS	FOCAL	1	WWOX
TCGA.AG.A026	16	79005777	79224466	218	-1.517	LARGE-LOSS	FOCAL	1	WWOX
TCGA.SS.A7HO	16	79060151	79063155	6	-7.209	LARGE-LOSS	FOCAL	1	WWOX
TCGA.AA.A010.01A	16	79628312	79633246	3	-2.6111	LARGE-LOSS	FOCAL	1	MAF
TCGA.AA.3696	16	79882249	79883075	3	-2.1606	LARGE-LOSS	FOCAL	0	None
TCGA.AU.6004	16	80335252	80336715	4	-1.7606	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3846	16	80467591	80468448	3	-1.938	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	81030882	81142768	28	-1.3659	LARGE-LOSS	FOCAL	6	"ATMIN,C16orf46,CENPN,CMC2,GCSH,PKD1L2"
TCGA.AA.A010.01A	16	81047672	81087590	15	-2.3798	LARGE-LOSS	FOCAL	3	"ATMIN,C16orf46,CENPN"
TCGA.A6.3808.01A	16	81051340	81124148	21	-1.5876	LARGE-LOSS	FOCAL	4	"ATMIN,C16orf46,CENPN,GCSH"
TCGA.AG.3598	16	83171081	83175810	10	-2.42	LARGE-LOSS	FOCAL	1	CDH13
TCGA.A6.5665	16	83173959	83175810	5	-8.3348	LARGE-LOSS	FOCAL	1	CDH13
TCGA.A6.2672	16	83173959	83179148	7	-7.0973	LARGE-LOSS	FOCAL	1	CDH13
TCGA.DM.A28H	16	83307254	83307548	3	-2.3576	LARGE-LOSS	FOCAL	1	CDH13
TCGA.AA.A010.01A	16	83842873	83994124	10	-1.4701	LARGE-LOSS	FOCAL	3	"HSBP1,MLYCD,OSGIN1"
TCGA.A6.3808.01A	16	83941709	83998666	10	-1.5148	LARGE-LOSS	FOCAL	2	"MLYCD,OSGIN1"
TCGA.AA.A010.01A	16	83994533	84014404	5	-2.5493	LARGE-LOSS	FOCAL	2	"NECAB2,OSGIN1"
TCGA.AA.A010.01A	16	84651079	84733608	8	-1.7735	LARGE-LOSS	FOCAL	3	"COTL1,KLHL36,USP10"
TCGA.CM.6168	16	84911497	84912808	3	-1.6206	LARGE-LOSS	FOCAL	1	CRISPLD2
TCGA.A6.3808.01A	16	85646903	85704551	15	-1.6085	LARGE-LOSS	FOCAL	1	GSE1
TCGA.AA.3556	16	85927078	85933037	3	-2.0368	LARGE-LOSS	FOCAL	1	IRF8
TCGA.AZ.4681	16	85927078	85933037	3	-1.6957	LARGE-LOSS	FOCAL	1	IRF8
TCGA.AA.A03F	16	85932131	85935796	3	-1.4818	LARGE-LOSS	FOCAL	1	IRF8
TCGA.G4.6586	16	85932131	85935796	3	-4.2106	LARGE-LOSS	FOCAL	1	IRF8
TCGA.AM.5820	16	87479338	87480942	3	-1.6979	LARGE-LOSS	FOCAL	1	ZCCHC14
TCGA.AA.3973	16	88081903	88082062	3	-3.8758	LARGE-LOSS	FOCAL	1	BANP
TCGA.CM.5349	16	88190403	88253714	3	-2.4588	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	16	88593173	88652949	11	-2.0543	LARGE-LOSS	FOCAL	2	"ZC3H18,ZFPM1"
TCGA.AA.A010.01A	16	88752680	88786465	19	-1.9452	LARGE-LOSS	FOCAL	4	"CTU2,PIEZO1,RNF166,SNAI3"
TCGA.A6.3808.01A	16	88778983	88870921	23	-2.8859	LARGE-LOSS	FOCAL	3	"CDT1,CTU2,PIEZO1"
TCGA.AA.A010.01A	16	88870921	88891126	14	-1.5904	LARGE-LOSS	FOCAL	3	"APRT,CDT1,GALNS"
TCGA.AA.A00N.01A	16	89288464	89294250	6	-1.9839	LARGE-LOSS	FOCAL	1	ZNF778
TCGA.AA.A010.01A	16	89623283	89656233	15	-1.7918	LARGE-LOSS	FOCAL	3	"CPNE7,RPL13,SPG7"
TCGA.AA.A010.01A	16	89755596	89761956	10	-2.3395	LARGE-LOSS	FOCAL	1	CDK10
TCGA.AA.A010.01A	16	89862266	89882243	9	-1.4694	LARGE-LOSS	FOCAL	1	FANCA
TCGA.AA.A00N.01A	16	89865942	89911655	8	-2.1707	LARGE-LOSS	FOCAL	2	"FANCA,SPIRE2"
TCGA.AA.A010.01A	16	89967004	90104115	40	-1.7649	LARGE-LOSS	FOCAL	7	"CENPBD1,DBNDD1,DEF8,GAS8,MC1R,TCF25,TUBB3"
TCGA.AY.5543	16	90158837	90163274	2	-1.3322	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	5960	30849	6	-2.1592	LARGE-LOSS	FOCAL	1	DOC2B
TCGA.AA.3952	17	6887	602468	117	-2.3913	LARGE-LOSS	FOCAL	6	"C17orf97,DOC2B,FAM101B,LOC100506388,RPH3AL,VPS53"
TCGA.AG.3909.01A	17	648765	706885	14	-1.6014	LARGE-LOSS	FOCAL	4	"GEMIN4,GLOD4,NXN,RNMTL1"
TCGA.AA.A010.01A	17	1368936	1375164	7	-1.3816	LARGE-LOSS	FOCAL	1	MYO1C
TCGA.AA.A010.01A	17	1377868	1412926	20	-2.0562	LARGE-LOSS	FOCAL	2	"INPP5K,MYO1C"
TCGA.AG.3909.01A	17	1554069	1558627	4	-1.3231	LARGE-LOSS	FOCAL	1	PRPF8
TCGA.AA.A02W.01A	17	1561496	1561852	2	-6.5859	LARGE-LOSS	FOCAL	1	PRPF8
TCGA.AG.3909.01A	17	1583981	1586775	3	-1.7152	LARGE-LOSS	FOCAL	1	PRPF8
TCGA.AA.A010.01A	17	1928056	1988972	24	-1.6269	LARGE-LOSS	FOCAL	5	"DPH1,HIC1,OVCA2,RTN4RL1,SMG6"
TCGA.AG.3909.01A	17	2195794	2221126	8	-1.7242	LARGE-LOSS	FOCAL	2	"SMG6,SRR"
TCGA.CK.5914.01A	17	2195794	2238507	22	-1.8407	LARGE-LOSS	FOCAL	3	"SMG6,SRR,TSR1"
TCGA.AA.A00N.01A	17	2195794	2239281	24	-1.5849	LARGE-LOSS	FOCAL	3	"SMG6,SRR,TSR1"
TCGA.AA.A010.01A	17	2218826	2227479	7	-1.779	LARGE-LOSS	FOCAL	2	"SRR,TSR1"
TCGA.AG.3909.01A	17	2222080	2238507	14	-1.3949	LARGE-LOSS	FOCAL	2	"SRR,TSR1"
TCGA.AA.A010.01A	17	2228560	2246775	13	-2.5033	LARGE-LOSS	FOCAL	2	"SGSM2,TSR1"
TCGA.AZ.4684.01A	17	2405449	2570244	5	-1.5091	LARGE-LOSS	FOCAL	2	"METTL16,PAFAH1B1"
TCGA.AA.A010.01A	17	2569300	2703748	29	-2.2204	LARGE-LOSS	FOCAL	3	"CLUH,PAFAH1B1,RAP1GAP2"
TCGA.AA.3867	17	2662044	2669943	3	-4.6806	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6295	17	3289172	3387898	34	-3.3632	LARGE-LOSS	FOCAL	5	"ASPA,OR1E1,OR1E2,OR3A3,SPATA22"
TCGA.AA.A00N.01A	17	3346426	3392482	10	-1.5904	LARGE-LOSS	FOCAL	2	"ASPA,SPATA22"
TCGA.AG.3909.01A	17	3365735	3379423	4	-2.0232	LARGE-LOSS	FOCAL	2	"ASPA,SPATA22"
TCGA.AA.3848	17	3505567	3555423	18	-5.5628	LARGE-LOSS	FOCAL	3	"CTNS,SHPK,TRPV1"
TCGA.AG.3909.01A	17	3543432	3593307	18	-1.4522	LARGE-LOSS	FOCAL	4	"CTNS,EMC6,P2RX5,TAX1BP3"
TCGA.CK.5914.01A	17	3543432	3638080	38	-1.4952	LARGE-LOSS	FOCAL	6	"CTNS,EMC6,GSG2,ITGAE,P2RX5,TAX1BP3"
TCGA.AA.A02W.01A	17	3592749	3594900	5	-5.1426	LARGE-LOSS	FOCAL	1	P2RX5
TCGA.AA.A00N.01A	17	3618092	3638080	12	-1.6006	LARGE-LOSS	FOCAL	2	"GSG2,ITGAE"
TCGA.AG.3909.01A	17	3618092	3662669	24	-1.3571	LARGE-LOSS	FOCAL	2	"GSG2,ITGAE"
TCGA.AA.A00N.01A	17	3728199	3746341	6	-1.4844	LARGE-LOSS	FOCAL	1	C17orf85
TCGA.AA.A010.01A	17	3773051	3783588	5	-1.4838	LARGE-LOSS	FOCAL	1	CAMKK1
TCGA.AA.3662	17	3781763	3799917	7	-2.4087	LARGE-LOSS	FOCAL	2	"CAMKK1,P2RX1"
TCGA.AA.A010.01A	17	3784864	3802896	12	-2.3836	LARGE-LOSS	FOCAL	2	"CAMKK1,P2RX1"
TCGA.AA.A010.01A	17	3806459	3856908	26	-1.8297	LARGE-LOSS	FOCAL	2	"ATP2A3,P2RX1"
TCGA.AG.4009.01A	17	3844238	3856586	7	-1.4017	LARGE-LOSS	FOCAL	1	ATP2A3
TCGA.AA.A02E.01A	17	3916755	3917334	2	-5.2142	LARGE-LOSS	FOCAL	1	ZZEF1
TCGA.AG.3909.01A	17	4080401	4087056	7	-1.6998	LARGE-LOSS	FOCAL	1	ANKFY1
TCGA.AA.A010.01A	17	4100617	4145509	7	-1.7819	LARGE-LOSS	FOCAL	1	ANKFY1
TCGA.EI.7002	17	4371253	4375101	4	-2.2181	LARGE-LOSS	FOCAL	1	SPNS3
TCGA.AG.3909.01A	17	4435789	4442693	7	-1.5361	LARGE-LOSS	FOCAL	2	"MYBBP1A,SPNS2"
TCGA.AF.2693	17	4475583	4540276	15	-1.3554	LARGE-LOSS	FOCAL	2	"ALOX15,SMTNL2"
TCGA.AG.3584	17	4501014	4506083	3	-9.9354	LARGE-LOSS	FOCAL	1	SMTNL2
TCGA.AG.3726	17	4501014	4506083	3	-7.0242	LARGE-LOSS	FOCAL	1	SMTNL2
TCGA.CL.4957	17	4501014	4506083	3	-1.8091	LARGE-LOSS	FOCAL	1	SMTNL2
TCGA.A6.5659	17	4535384	4540276	5	-6.5124	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.D5.5541	17	4536831	4540276	5	-7.9912	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.D5.6536	17	4536831	4540276	5	-1.4081	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.A6.2677	17	4536831	4544550	6	-7.3706	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.AA.3662	17	4539170	4540276	3	-4.8903	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.AA.3870	17	4539170	4540276	3	-2.4198	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.AH.6643	17	4539170	4540276	3	-6.671	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.AZ.6603	17	4539170	4540276	3	-7.1458	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.F5.6465	17	4539170	4540276	3	-4.8683	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.CM.6166	17	4539170	4544550	6	-5.49	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.DY.A0XA	17	4539170	4544550	6	-5.891	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.A6.A56B	17	4540276	4544550	3	-3.6617	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.DT.5265	17	4544465	4550188	3	-5.4094	LARGE-LOSS	FOCAL	1	ALOX15
TCGA.AG.A016.01A	17	4634730	4635029	2	-1.7767	LARGE-LOSS	FOCAL	1	MED11
TCGA.AG.A025.01A	17	4634730	4635029	2	-6.1191	LARGE-LOSS	FOCAL	1	MED11
TCGA.AF.3914.01A	17	4637834	4645584	8	-1.4952	LARGE-LOSS	FOCAL	2	"CXCL16,ZMYND15"
TCGA.AA.A024.01A	17	4688629	4689148	2	-2.0546	LARGE-LOSS	FOCAL	1	VMO1
TCGA.AA.A010.01A	17	4699449	4725906	18	-1.8841	LARGE-LOSS	FOCAL	2	"PLD2,PSMB6"
TCGA.A6.3808.01A	17	4787610	4799281	22	-1.4545	LARGE-LOSS	FOCAL	1	MINK1
TCGA.AA.A010.01A	17	4835853	4885328	39	-1.5345	LARGE-LOSS	FOCAL	7	"CAMTA2,ENO3,GP1BA,PFN1,RNF167,SLC25A11,SPAG7"
TCGA.AF.3914.01A	17	4845638	4864028	16	-1.336	LARGE-LOSS	FOCAL	4	"ENO3,PFN1,RNF167,SPAG7"
TCGA.AA.A010.01A	17	4886005	4892047	5	-2.3252	LARGE-LOSS	FOCAL	2	"CAMTA2,INCA1"
TCGA.AA.A010.01A	17	4892703	4907804	11	-2.8076	LARGE-LOSS	FOCAL	2	"INCA1,KIF1C"
TCGA.AA.A010.01A	17	4908138	4910521	3	-2.3101	LARGE-LOSS	FOCAL	1	KIF1C
TCGA.AA.A010.01A	17	4916897	4923770	5	-1.6129	LARGE-LOSS	FOCAL	1	KIF1C
TCGA.AG.3909.01A	17	4925375	5086851	44	-1.4443	LARGE-LOSS	FOCAL	6	"KIF1C,SLC52A1,USP6,ZFP3,ZNF232,ZNF594"
TCGA.AA.A00N.01A	17	4994749	5009099	4	-2.3885	LARGE-LOSS	FOCAL	2	"ZFP3,ZNF232"
TCGA.A6.3808.01A	17	4996588	5076048	35	-1.6105	LARGE-LOSS	FOCAL	3	"USP6,ZFP3,ZNF232"
TCGA.AA.A00N.01A	17	5044657	5051800	8	-2.2158	LARGE-LOSS	FOCAL	1	USP6
TCGA.AA.A00N.01A	17	5074829	5118156	7	-1.3412	LARGE-LOSS	FOCAL	3	"SCIMP,USP6,ZNF594"
TCGA.AG.3909.01A	17	5324569	5405077	30	-1.674	LARGE-LOSS	FOCAL	7	"C1QBP,DERL2,DHX33,LOC728392,MIS12,NLRP1,RPAIN"
TCGA.AG.A01N.01A	17	5352072	5354075	3	-4.2305	LARGE-LOSS	FOCAL	1	DHX33
TCGA.AA.3662	17	5772275	5777382	6	-2.2223	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3968	17	5782944	6508828	322	-3.0691	LARGE-LOSS	FOCAL	5	"AIPL1,FAM64A,KIAA0753,PITPNM3,WSCD1"
TCGA.AY.A8YK	17	6106485	6132446	6	-3.8093	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	17	6307725	6318440	8	-1.3509	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	17	6524061	6589499	17	-1.7398	LARGE-LOSS	FOCAL	5	"C17orf100,KIAA0753,MED31,SLC13A5,TXNDC17"
TCGA.CK.5914.01A	17	6531388	6589499	13	-1.5768	LARGE-LOSS	FOCAL	5	"C17orf100,KIAA0753,MED31,SLC13A5,TXNDC17"
TCGA.F5.6861	17	6607522	6621505	3	-2.0234	LARGE-LOSS	FOCAL	1	SLC13A5
TCGA.AA.A00N.01A	17	6665416	6690578	6	-1.382	LARGE-LOSS	FOCAL	2	"FBXO39,XAF1"
TCGA.AG.4009.01A	17	6901768	6920508	15	-1.3981	LARGE-LOSS	FOCAL	3	"ALOX12,C17orf49,RNASEK"
TCGA.AF.3914.01A	17	6919797	6920508	3	-1.995	LARGE-LOSS	FOCAL	1	C17orf49
TCGA.AG.4009.01A	17	7193235	7222317	16	-1.7832	LARGE-LOSS	FOCAL	4	"EIF5A,GPS2,NEURL4,YBX2"
TCGA.AA.A00N.01A	17	7194360	7217590	11	-1.748	LARGE-LOSS	FOCAL	3	"EIF5A,GPS2,YBX2"
TCGA.AA.A010.01A	17	7194360	7217590	11	-1.6777	LARGE-LOSS	FOCAL	3	"EIF5A,GPS2,YBX2"
TCGA.AF.3914.01A	17	7212996	7217590	7	-1.9819	LARGE-LOSS	FOCAL	2	"EIF5A,GPS2"
TCGA.AF.3914.01A	17	7291714	7328970	19	-1.6873	LARGE-LOSS	FOCAL	6	"C17orf74,NLGN2,PLSCR3,SPEM1,TMEM256,TNK1"
TCGA.AA.A010.01A	17	7293642	7329263	20	-2.09	LARGE-LOSS	FOCAL	5	"C17orf74,NLGN2,PLSCR3,SPEM1,TMEM256"
TCGA.CK.5914.01A	17	7453374	7481421	27	-1.6004	LARGE-LOSS	FOCAL	5	"EIF4A1,SENP3,TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AF.3914.01A	17	7462921	7466396	6	-1.3873	LARGE-LOSS	FOCAL	3	"SENP3,TNFSF12-TNFSF13,TNFSF13"
TCGA.AG.3909.01A	17	7463324	7507048	40	-1.9432	LARGE-LOSS	FOCAL	8	"CD68,EIF4A1,FXR2,MPDU1,SENP3,SOX15,TNFSF12-TNFSF13,TNFSF13"
TCGA.AA.A00N.01A	17	7463324	7509352	42	-1.549	LARGE-LOSS	FOCAL	8	"CD68,EIF4A1,FXR2,MPDU1,SENP3,SOX15,TNFSF12-TNFSF13,TNFSF13"
TCGA.A6.6652	17	7577406	7578678	3	-3.8166	LARGE-LOSS	FOCAL	1	TP53
TCGA.AG.A01W.01A	17	7701090	7703374	4	-1.5668	LARGE-LOSS	FOCAL	1	DNAH2
TCGA.AA.A00N.01A	17	7733606	7735847	4	-1.6024	LARGE-LOSS	FOCAL	1	DNAH2
TCGA.AG.4009.01A	17	7734452	7834312	61	-1.3992	LARGE-LOSS	FOCAL	8	"CHD3,CYB5D1,DNAH2,KCNAB3,KDM6B,NAA38,TMEM88,TRAPPC1"
TCGA.AA.A00Z.01A	17	7749172	7754302	5	-2.2601	LARGE-LOSS	FOCAL	1	KDM6B
TCGA.AA.A010.01A	17	7760001	7788218	5	-1.4851	LARGE-LOSS	FOCAL	3	"CHD3,CYB5D1,NAA38"
TCGA.CK.5914.01A	17	7762689	7811964	33	-1.5319	LARGE-LOSS	FOCAL	2	"CHD3,CYB5D1"
TCGA.AA.A00N.01A	17	7762689	7840431	55	-1.3845	LARGE-LOSS	FOCAL	5	"CHD3,CNTROB,CYB5D1,KCNAB3,TRAPPC1"
TCGA.AA.A010.01A	17	7792282	7811964	31	-2.8593	LARGE-LOSS	FOCAL	1	CHD3
TCGA.AA.A010.01A	17	7812419	7830894	11	-2.1238	LARGE-LOSS	FOCAL	2	"CHD3,KCNAB3"
TCGA.AA.A010.01A	17	7832463	7840431	11	-1.5033	LARGE-LOSS	FOCAL	3	"CNTROB,KCNAB3,TRAPPC1"
TCGA.D5.5540	17	7940753	7974470	11	-4.703	LARGE-LOSS	FOCAL	1	ALOX15B
TCGA.AA.A00N.01A	17	8014659	8018877	5	-1.683	LARGE-LOSS	FOCAL	1	ALOXE3
TCGA.AA.A010.01A	17	8044338	8079475	21	-1.5966	LARGE-LOSS	FOCAL	3	"PER1,TMEM107,VAMP2"
TCGA.AA.A01D.01A	17	8218152	8219044	3	-5.974	LARGE-LOSS	FOCAL	1	ARHGEF15
TCGA.AG.3909.01A	17	8224109	8285413	10	-2.1981	LARGE-LOSS	FOCAL	4	"ARHGEF15,KRBA2,ODF4,RPL26"
TCGA.AA.A00N.01A	17	8248654	8285413	8	-2.286	LARGE-LOSS	FOCAL	3	"KRBA2,ODF4,RPL26"
TCGA.CK.5914.01A	17	8248654	8347536	10	-1.7677	LARGE-LOSS	FOCAL	5	"KRBA2,NDEL1,ODF4,RNF222,RPL26"
TCGA.AA.A00N.01A	17	8296067	8366554	9	-1.4064	LARGE-LOSS	FOCAL	2	"NDEL1,RNF222"
TCGA.AG.3909.01A	17	8347536	8366554	8	-1.8229	LARGE-LOSS	FOCAL	1	NDEL1
TCGA.AA.3861.01A	17	8366554	8413083	20	-1.5525	LARGE-LOSS	FOCAL	2	"MYH10,NDEL1"
TCGA.AA.3862.01A	17	8366554	8413083	20	-1.4559	LARGE-LOSS	FOCAL	2	"MYH10,NDEL1"
TCGA.AA.A00N.01A	17	8448718	8457218	6	-1.6553	LARGE-LOSS	FOCAL	1	MYH10
TCGA.AA.A010.01A	17	9124424	9153827	3	-1.7371	LARGE-LOSS	FOCAL	2	"NTN1,STX8"
TCGA.AF.3914.01A	17	9538692	9559680	5	-1.405	LARGE-LOSS	FOCAL	2	"CFAP52,USP43"
TCGA.AG.A01L.01A	17	9804258	9808100	2	-1.8099	LARGE-LOSS	FOCAL	1	RCVRN
TCGA.AA.A01D.01A	17	10297546	10301779	4	-4.3798	LARGE-LOSS	FOCAL	1	MYH8
TCGA.AA.A01D.01A	17	10415104	10416908	4	-4.5943	LARGE-LOSS	FOCAL	1	MYH1
TCGA.AA.A00N.01A	17	10584386	10632264	14	-1.3335	LARGE-LOSS	FOCAL	3	"ADPRM,SCO1,TMEM220"
TCGA.AG.3909.01A	17	10590017	10632264	13	-1.505	LARGE-LOSS	FOCAL	3	"ADPRM,SCO1,TMEM220"
TCGA.AA.3968	17	10958453	11178267	97	-5.0962	LARGE-LOSS	FOCAL	1	SHISA6
TCGA.AA.A010.01A	17	11144763	11166651	2	-2.2912	LARGE-LOSS	FOCAL	1	SHISA6
TCGA.AA.3968	17	11178367	12106198	336	-3.2203	LARGE-LOSS	FOCAL	4	"DNAH9,MAP2K4,SHISA6,ZNF18"
TCGA.AD.6890	17	11442180	11935025	162	-2.0388	LARGE-LOSS	FOCAL	4	"DNAH9,MAP2K4,SHISA6,ZNF18"
TCGA.DM.A28H	17	11569467	12048343	135	-2.3651	LARGE-LOSS	FOCAL	3	"DNAH9,MAP2K4,ZNF18"
TCGA.AG.3885	17	11656464	12088555	110	-4.1779	LARGE-LOSS	FOCAL	3	"DNAH9,MAP2K4,ZNF18"
TCGA.QL.A97D	17	11757555	11935025	36	-2.8104	LARGE-LOSS	FOCAL	3	"DNAH9,MAP2K4,ZNF18"
TCGA.NH.A6GC	17	12183247	12206781	13	-3.283	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	17	12908288	12920113	8	-1.6191	LARGE-LOSS	FOCAL	1	ELAC2
TCGA.AA.3968	17	13500395	13698564	106	-3.0459	LARGE-LOSS	FOCAL	1	HS3ST3A1
TCGA.AA.3667	17	13807527	13825871	4	-6.0831	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	17	14417106	14420821	3	-2.0293	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2689	17	15475086	16041305	73	-2.7284	LARGE-LOSS	FOCAL	8	"ADORA2B,CDRT1,NCOR1,TBC1D26,TRIM16,TTC19,ZNF286A,ZSWIM7"
TCGA.DY.A1DG	17	15554277	15557529	3	-6.128	LARGE-LOSS	FOCAL	1	TRIM16
TCGA.AG.3591	17	15554560	15614821	10	-2.881	LARGE-LOSS	FOCAL	2	"TRIM16,ZNF286A"
TCGA.AA.A00N.01A	17	15603566	15619352	6	-1.5966	LARGE-LOSS	FOCAL	1	ZNF286A
TCGA.AA.3692	17	15614821	15658894	3	-3.6488	LARGE-LOSS	FOCAL	2	"TBC1D26,ZNF286A"
TCGA.CI.6620	17	15614821	15658894	3	-2.3478	LARGE-LOSS	FOCAL	2	"TBC1D26,ZNF286A"
TCGA.AA.A00N.01A	17	15877956	15909744	11	-1.897	LARGE-LOSS	FOCAL	3	"ADORA2B,TTC19,ZSWIM7"
TCGA.AG.3909.01A	17	16040584	16052697	6	-1.747	LARGE-LOSS	FOCAL	1	NCOR1
TCGA.AA.A00N.01A	17	16040584	16056615	9	-1.7178	LARGE-LOSS	FOCAL	1	NCOR1
TCGA.AG.4009.01A	17	16185265	16253208	10	-1.3822	LARGE-LOSS	FOCAL	2	"CENPV,PIGL"
TCGA.AA.A010.01A	17	16246079	16253208	4	-2.6458	LARGE-LOSS	FOCAL	1	CENPV
TCGA.AA.3842	17	16414211	16414786	3	-7.6748	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3972	17	16414211	16414786	3	-9.3508	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	17	16466402	16593733	11	-1.8454	LARGE-LOSS	FOCAL	3	"CCDC144A,ZNF287,ZNF624"
TCGA.AA.A00N.01A	17	16466402	16596250	12	-1.8783	LARGE-LOSS	FOCAL	3	"CCDC144A,ZNF287,ZNF624"
TCGA.AZ.4614	17	16588061	16662913	3	-7.0212	LARGE-LOSS	FOCAL	1	CCDC144A
TCGA.G4.6295	17	16588061	16740269	5	-5.9341	LARGE-LOSS	FOCAL	1	CCDC144A
TCGA.G4.6297	17	16588061	16740269	5	-4.6805	LARGE-LOSS	FOCAL	1	CCDC144A
TCGA.A6.3808.01A	17	16596250	16748648	23	-2.7252	LARGE-LOSS	FOCAL	1	CCDC144A
TCGA.AD.6890	17	16662913	16740269	3	-5.2963	LARGE-LOSS	FOCAL	1	CCDC144A
TCGA.AZ.6608	17	16662913	16740269	3	-7.045	LARGE-LOSS	FOCAL	1	CCDC144A
TCGA.DY.A0XA	17	16662913	16740269	3	-7.3365	LARGE-LOSS	FOCAL	1	CCDC144A
TCGA.DY.A1DD	17	16662913	16740269	3	-7.0488	LARGE-LOSS	FOCAL	1	CCDC144A
TCGA.A6.6140	17	16735531	16763554	3	-7.0923	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6679	17	16735531	16763554	3	-6.98105	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5656	17	16848749	16849478	3	-7.0668	LARGE-LOSS	FOCAL	1	TNFRSF13B
TCGA.AA.A010.01A	17	17577383	17579435	3	-2.3794	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	17696230	17720264	15	-1.4071	LARGE-LOSS	FOCAL	2	"RAI1,SREBF1"
TCGA.AA.A010.01A	17	17720542	17726780	5	-2.3628	LARGE-LOSS	FOCAL	1	SREBF1
TCGA.AA.A010.01A	17	17997079	18010411	11	-1.4512	LARGE-LOSS	FOCAL	1	DRG2
TCGA.AA.A010.01A	17	18022066	18035725	11	-2.5099	LARGE-LOSS	FOCAL	1	MYO15A
TCGA.AA.A010.01A	17	18036492	18046025	12	-1.5149	LARGE-LOSS	FOCAL	1	MYO15A
TCGA.AA.A010.01A	17	18098218	18158441	33	-1.7537	LARGE-LOSS	FOCAL	3	"ALKBH5,FLII,LLGL1"
TCGA.AF.3914.01A	17	18133238	18151867	19	-1.539	LARGE-LOSS	FOCAL	2	"FLII,LLGL1"
TCGA.AA.A00N.01A	17	18197962	18212134	8	-1.7318	LARGE-LOSS	FOCAL	1	TOP3A
TCGA.CK.5914.01A	17	18197962	18256896	22	-1.5846	LARGE-LOSS	FOCAL	3	"SHMT1,SMCR8,TOP3A"
TCGA.A6.3808.01A	17	18291450	18525761	23	-2.3876	LARGE-LOSS	FOCAL	2	"EVPLL,LGALS9C"
TCGA.AG.4009.01A	17	18392201	18397494	4	-1.6654	LARGE-LOSS	FOCAL	1	LGALS9C
TCGA.AG.3909.01A	17	18539756	18541877	4	-2.3888	LARGE-LOSS	FOCAL	1	TBC1D28
TCGA.AG.4009.01A	17	18775833	18793073	4	-1.408	LARGE-LOSS	FOCAL	1	PRPSAP2
TCGA.AA.A02W.01A	17	18880129	18880848	2	-5.8178	LARGE-LOSS	FOCAL	2	"FAM83G,SLC5A10"
TCGA.A6.3810.01A	17	18996507	18996798	2	-1.878	LARGE-LOSS	FOCAL	2	"LOC388436,LOC79999"
TCGA.AH.6549.01A	17	18996507	18996798	2	-2.1003	LARGE-LOSS	FOCAL	2	"LOC388436,LOC79999"
TCGA.AG.3909.01A	17	19250384	19288364	11	-1.6496	LARGE-LOSS	FOCAL	3	"B9D1,MAPK7,MFAP4"
TCGA.CK.5914.01A	17	19474738	19566619	10	-1.6256	LARGE-LOSS	FOCAL	2	"ALDH3A2,SLC47A1"
TCGA.AA.A00N.01A	17	19474738	19568223	11	-1.8374	LARGE-LOSS	FOCAL	2	"ALDH3A2,SLC47A1"
TCGA.AG.3909.01A	17	19474738	19568223	10	-1.9933	LARGE-LOSS	FOCAL	2	"ALDH3A2,SLC47A1"
TCGA.AA.A01Z	17	19514755	19537469	4	-8.4599	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	19750023	19768995	5	-1.6654	LARGE-LOSS	FOCAL	1	ULK2
TCGA.AG.3909.01A	17	19842989	19871654	7	-1.9703	LARGE-LOSS	FOCAL	1	AKAP10
TCGA.A6.3808.01A	17	20227445	20483048	15	-2.4158	LARGE-LOSS	FOCAL	2	"CDRT15L2,LGALS9B"
TCGA.F5.6811.01A	17	20295666	20300419	4	-1.3932	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4684.01A	17	20321913	20358597	7	-2.2275	LARGE-LOSS	FOCAL	1	LGALS9B
TCGA.AA.3509.01A	17	20321913	20361468	8	-1.8268	LARGE-LOSS	FOCAL	1	LGALS9B
TCGA.CK.4948.01B	17	20356285	20359827	3	-1.4214	LARGE-LOSS	FOCAL	1	LGALS9B
TCGA.CM.4750.01A	17	20356821	20358597	2	-1.9013	LARGE-LOSS	FOCAL	1	LGALS9B
TCGA.AA.3968	17	20673511	20733389	10	-2.8305	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	17	20741577	20789104	5	-1.51745	LARGE-LOSS	FOCAL	1	CCDC144NL
TCGA.AA.3941	17	20752506	20789104	3	-1.3647	LARGE-LOSS	FOCAL	1	CCDC144NL
TCGA.CA.5254	17	21348487	21504889	17	-3.8833	LARGE-LOSS	FOCAL	1	C17orf51
TCGA.AA.3850	17	21717444	21721971	5	-1.55335	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	17	21779139	21787327	3	-1.704	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3968	17	21940583	22217882	26	-3.0832	LARGE-LOSS	FOCAL	1	MTRNR2L1
TCGA.AA.3941	17	25468599	25470743	3	-4.391	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	17	25965235	26090956	17	-2.4061	LARGE-LOSS	FOCAL	2	"LGALS9,NOS2"
TCGA.G4.6295	17	26181864	26305866	27	-2.329	LARGE-LOSS	FOCAL	1	LYRM9
TCGA.AA.A00N.01A	17	26633042	26688147	29	-1.6369	LARGE-LOSS	FOCAL	5	"IFT20,POLDIP2,TMEM199,TMEM97,TNFAIP1"
TCGA.AA.A004.01A	17	26677467	26680203	5	-1.3565	LARGE-LOSS	FOCAL	1	POLDIP2
TCGA.A6.3808.01A	17	26679887	26696676	18	-1.5526	LARGE-LOSS	FOCAL	4	"POLDIP2,SEBOX,TMEM199,VTN"
TCGA.AA.A00N.01A	17	26964862	26982255	15	-1.4925	LARGE-LOSS	FOCAL	2	"KIAA0100,SDF2"
TCGA.AG.3909.01A	17	26969227	26988707	8	-1.5067	LARGE-LOSS	FOCAL	2	"KIAA0100,SDF2"
TCGA.AA.A004.01A	17	27008852	27010607	4	-2.1091	LARGE-LOSS	FOCAL	1	SUPT6H
TCGA.AA.A00N.01A	17	27046959	27052272	8	-1.8958	LARGE-LOSS	FOCAL	2	"RPL23A,TLCD1"
TCGA.AA.A010.01A	17	27046959	27093557	28	-2.0175	LARGE-LOSS	FOCAL	5	"FAM222B,NEK8,RPL23A,TLCD1,TRAF4"
TCGA.AA.A004.01A	17	27060991	27062220	3	-4.3433	LARGE-LOSS	FOCAL	1	NEK8
TCGA.AA.A01K.01A	17	27068394	27068895	2	-5.1978	LARGE-LOSS	FOCAL	1	NEK8
TCGA.A6.3808.01A	17	27802639	27938847	42	-1.4503	LARGE-LOSS	FOCAL	5	"ABHD15,ANKRD13B,GIT1,TAOK1,TP53I13"
TCGA.AA.A010.01A	17	27869532	27910463	19	-2.4962	LARGE-LOSS	FOCAL	4	"ABHD15,GIT1,TAOK1,TP53I13"
TCGA.AA.A010.01A	17	27920593	27938847	7	-1.8413	LARGE-LOSS	FOCAL	1	ANKRD13B
TCGA.AA.A024.01A	17	28618342	28618743	2	-4.0588	LARGE-LOSS	FOCAL	1	BLMH
TCGA.A6.3808.01A	17	29161117	29204976	16	-2.3263	LARGE-LOSS	FOCAL	1	ATAD5
TCGA.AA.A010.01A	17	29679234	29708839	10	-1.7264	LARGE-LOSS	FOCAL	1	NF1
TCGA.AA.A010.01A	17	29886968	30211392	18	-1.6324	LARGE-LOSS	FOCAL	2	"COPRS,UTP6"
TCGA.A6.3808.01A	17	30267231	30380218	26	-2.5343	LARGE-LOSS	FOCAL	2	"LRRC37B,SUZ12"
TCGA.AA.A00N.01A	17	30320210	30520957	29	-1.3233	LARGE-LOSS	FOCAL	3	"LRRC37B,RHOT1,SUZ12"
TCGA.CK.5914.01A	17	30497993	30510143	6	-1.4206	LARGE-LOSS	FOCAL	1	RHOT1
TCGA.AA.A00N.01A	17	30658745	30668167	9	-1.8084	LARGE-LOSS	FOCAL	1	C17orf75
TCGA.AA.A00N.01A	17	30773912	30821739	14	-1.4244	LARGE-LOSS	FOCAL	3	"CDK5R1,MYO1D,PSMD11"
TCGA.AA.A010.01A	17	30791005	30821739	12	-2.5055	LARGE-LOSS	FOCAL	3	"CDK5R1,MYO1D,PSMD11"
TCGA.AA.A010.01A	17	31203743	31267792	7	-1.9376	LARGE-LOSS	FOCAL	2	"MYO1D,TMEM98"
TCGA.A6.2684	17	31813143	32836992	547	-1.7623	LARGE-LOSS	FOCAL	7	"ASIC2,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8"
TCGA.AA.A004.01A	17	33309995	33312957	2	-4.8037	LARGE-LOSS	FOCAL	1	LIG3
TCGA.A6.3808.01A	17	34398255	34641414	12	-1.4281	LARGE-LOSS	FOCAL	10	"CCL18,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,LOC101060321,TBC1D3F,TBC1D3H"
TCGA.F4.6704	17	34449419	34456072	3	-1.4152	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	17	34523933	34539846	2	-3.4251	LARGE-LOSS	FOCAL	4	"CCL3L1,CCL3L3,CCL4L1,CCL4L2"
TCGA.AA.A00N.01A	17	34842490	34852058	5	-1.692	LARGE-LOSS	FOCAL	2	"MYO19,ZNHIT3"
TCGA.AG.3909.01A	17	34842490	34858890	9	-1.3874	LARGE-LOSS	FOCAL	2	"MYO19,ZNHIT3"
TCGA.A6.3808.01A	17	34883365	34945607	18	-1.604	LARGE-LOSS	FOCAL	3	"GGNBP2,MYO19,PIGW"
TCGA.AA.A00N.01A	17	34888275	34945607	16	-1.8379	LARGE-LOSS	FOCAL	3	"GGNBP2,MYO19,PIGW"
TCGA.AG.3909.01A	17	34892911	34951364	14	-1.333	LARGE-LOSS	FOCAL	3	"DHRS11,GGNBP2,PIGW"
TCGA.AG.A00H.01A	17	34955323	34956357	3	-4.5721	LARGE-LOSS	FOCAL	1	DHRS11
TCGA.AA.3850	17	35528401	35550948	4	-1.32865	LARGE-LOSS	FOCAL	1	ACACA
TCGA.AA.A010.01A	17	35732964	35872933	25	-1.4906	LARGE-LOSS	FOCAL	4	"ACACA,C17orf78,DUSP14,TADA2A"
TCGA.A6.3808.01A	17	36454378	36462449	3	-4.4953	LARGE-LOSS	FOCAL	1	MRPL45
TCGA.AA.A01D.01A	17	36477962	36478334	2	-6.2264	LARGE-LOSS	FOCAL	1	MRPL45
TCGA.AA.A010.01A	17	36619053	36656808	19	-2.6023	LARGE-LOSS	FOCAL	1	ARHGAP23
TCGA.A6.3808.01A	17	36623517	36656808	17	-2.4067	LARGE-LOSS	FOCAL	1	ARHGAP23
TCGA.CK.4952.01A	17	36675379	36675984	2	-5.6719	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	36724393	36912088	35	-2.108	LARGE-LOSS	FOCAL	6	"C17orf96,CISD3,MLLT6,PCGF2,PSMB3,SRCIN1"
TCGA.AG.A00H.01A	17	36920300	36927276	4	-3.188	LARGE-LOSS	FOCAL	2	"PIP4K2B,PSMB3"
TCGA.AA.A004.01A	17	36958303	36958916	2	-5.3243	LARGE-LOSS	FOCAL	1	CWC25
TCGA.AG.A00H.01A	17	36958303	36958916	2	-6.3165	LARGE-LOSS	FOCAL	1	CWC25
TCGA.AG.A025.01A	17	36958303	36958916	2	-5.7589	LARGE-LOSS	FOCAL	1	CWC25
TCGA.AA.3524	17	36981871	36986065	3	-2.9096	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	17	37351104	37360730	6	-1.46	LARGE-LOSS	FOCAL	2	"CACNB1,RPL19"
TCGA.AA.A00N.01A	17	37357416	37360730	5	-1.6437	LARGE-LOSS	FOCAL	1	RPL19
TCGA.AA.A00N.01A	17	38026920	38032933	6	-1.8562	LARGE-LOSS	FOCAL	1	ZPBP2
TCGA.CK.5914.01A	17	38256251	38290476	9	-1.4306	LARGE-LOSS	FOCAL	2	"MSL1,NR1D1"
TCGA.AA.A00N.01A	17	38256251	38349556	30	-1.5135	LARGE-LOSS	FOCAL	4	"CASC3,MSL1,NR1D1,RAPGEFL1"
TCGA.AA.A00N.01A	17	38564182	38572945	10	-1.4535	LARGE-LOSS	FOCAL	1	TOP2A
TCGA.AA.A00N.01A	17	38792146	38813918	8	-1.4178	LARGE-LOSS	FOCAL	2	"KRT222,SMARCE1"
TCGA.AA.A00N.01A	17	38974632	38991757	8	-1.3644	LARGE-LOSS	FOCAL	2	"KRT10,TMEM99"
TCGA.AA.3862.01A	17	39215864	39221659	3	-3.5104	LARGE-LOSS	FOCAL	2	"KRTAP2-3,KRTAP2-4"
TCGA.AA.3811	17	39217596	39218713	4	-1.4994	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	17	39308333	39319835	6	-1.42125	LARGE-LOSS	FOCAL	1	KRTAP4-4
TCGA.AA.3509.01A	17	39421853	39422458	2	-4.3521	LARGE-LOSS	FOCAL	1	KRTAP9-6
TCGA.AZ.4684.01A	17	39421853	39422458	2	-4.8427	LARGE-LOSS	FOCAL	1	KRTAP9-6
TCGA.A6.3808.01A	17	39674555	39780303	27	-1.495	LARGE-LOSS	FOCAL	6	"KRT14,KRT15,KRT16,KRT17,KRT19,KRT9"
TCGA.AG.A01W.01A	17	39809843	39810547	2	-2.7785	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	17	39845982	39846965	2	-1.4192	LARGE-LOSS	FOCAL	1	EIF1
TCGA.AA.A02R.01A	17	39883252	39883542	2	-6.8124	LARGE-LOSS	FOCAL	1	HAP1
TCGA.AA.A01I.01A	17	39973272	40028248	26	-1.6576	LARGE-LOSS	FOCAL	5	"ACLY,FKBP10,KLHL10,KLHL11,NT5C3B"
TCGA.A6.3808.01A	17	39976044	40025241	22	-1.557	LARGE-LOSS	FOCAL	5	"ACLY,FKBP10,KLHL10,KLHL11,NT5C3B"
TCGA.AA.A00N.01A	17	39983631	40035002	22	-1.6339	LARGE-LOSS	FOCAL	4	"ACLY,KLHL10,KLHL11,NT5C3B"
TCGA.AA.A010.01A	17	40659488	40704921	11	-1.8242	LARGE-LOSS	FOCAL	3	"ATP6V0A1,HSD17B1,NAGLU"
TCGA.AA.A00N.01A	17	40720434	40726069	9	-1.4472	LARGE-LOSS	FOCAL	2	"MLX,PSMC3IP"
TCGA.AG.A025.01A	17	40724914	40726069	3	-4.5491	LARGE-LOSS	FOCAL	2	"MLX,PSMC3IP"
TCGA.AF.3914.01A	17	40913788	40937089	14	-1.4728	LARGE-LOSS	FOCAL	3	"RAMP2,VPS25,WNK4"
TCGA.AA.A00N.01A	17	40926624	40928204	3	-2.2473	LARGE-LOSS	FOCAL	1	VPS25
TCGA.AA.A010.01A	17	41177920	41201078	7	-1.6257	LARGE-LOSS	FOCAL	2	"BRCA1,RND2"
TCGA.CK.4952.01A	17	41755391	41949825	11	-3.8869	LARGE-LOSS	FOCAL	5	"C17orf105,CD300LG,DUSP3,MPP3,SOST"
TCGA.AA.A010.01A	17	41835840	41888438	13	-1.7991	LARGE-LOSS	FOCAL	4	"C17orf105,DUSP3,MPP3,SOST"
TCGA.AA.A00N.01A	17	41857783	41861143	5	-1.8686	LARGE-LOSS	FOCAL	1	C17orf105
TCGA.AA.A010.01A	17	42232626	42255536	8	-1.4717	LARGE-LOSS	FOCAL	2	"ASB16,C17orf53"
TCGA.AF.3914.01A	17	42254011	42295467	26	-1.4863	LARGE-LOSS	FOCAL	4	"ASB16,ATXN7L3,TMUB2,UBTF"
TCGA.AA.A010.01A	17	42265048	42295467	24	-2.6816	LARGE-LOSS	FOCAL	3	"ATXN7L3,TMUB2,UBTF"
TCGA.AA.A010.01A	17	42389899	42399042	12	-1.3479	LARGE-LOSS	FOCAL	2	"RUNDC3A,SLC25A39"
TCGA.AA.A010.01A	17	42399769	42400580	3	-1.6748	LARGE-LOSS	FOCAL	1	SLC25A39
TCGA.AA.A010.01A	17	42426511	42437254	10	-2.5996	LARGE-LOSS	FOCAL	2	"FAM171A2,GRN"
TCGA.AA.A010.01A	17	42449685	42455043	7	-1.3295	LARGE-LOSS	FOCAL	1	ITGA2B
TCGA.AG.A023.01A	17	42455043	42455689	2	-4.7775	LARGE-LOSS	FOCAL	1	ITGA2B
TCGA.AA.A01T	17	42651186	42652328	4	-4.6227	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	42818672	42837039	6	-1.6676	LARGE-LOSS	FOCAL	2	"ADAM11,DBF4B"
TCGA.AF.3914.01A	17	43213454	43215092	5	-1.5715	LARGE-LOSS	FOCAL	1	ACBD4
TCGA.AA.A010.01A	17	43307914	43333676	24	-2.4519	LARGE-LOSS	FOCAL	2	"FMNL1,SPATA32"
TCGA.AF.3914.01A	17	43315867	43323836	12	-1.7678	LARGE-LOSS	FOCAL	1	FMNL1
TCGA.AA.3994	17	43341109	43346979	3	-3.4571	LARGE-LOSS	FOCAL	1	MAP3K14
TCGA.AA.A01C.01A	17	43350818	43351453	2	-3.413	LARGE-LOSS	FOCAL	1	MAP3K14
TCGA.CK.5913	17	43554901	43656379	3	-1.5566	LARGE-LOSS	FOCAL	1	PLEKHM1
TCGA.F4.6570	17	43570225	43657920	3	-1.5753	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3818	17	43925296	43927289	3	-7.8612	LARGE-LOSS	FOCAL	0	None
TCGA.CA.5797	17	44165802	44353884	48	-1.5084	LARGE-LOSS	FOCAL	1	KANSL1
TCGA.AA.3941	17	44166269	44180953	5	-1.3933	LARGE-LOSS	FOCAL	1	KANSL1
TCGA.AA.3877	17	44269292	44271999	3	-4.3535	LARGE-LOSS	FOCAL	1	KANSL1
TCGA.A6.3808.01A	17	44374718	44788302	16	-2.6236	LARGE-LOSS	FOCAL	5	"ARL17A,ARL17B,LRRC37A,LRRC37A2,NSF"
TCGA.AA.A010.01A	17	44827111	44851007	7	-2.3951	LARGE-LOSS	FOCAL	2	"NSF,WNT3"
TCGA.AA.A00N.01A	17	45468782	45507145	10	-2.2067	LARGE-LOSS	FOCAL	1	EFCAB13
TCGA.AG.3909.01A	17	45468782	45507145	10	-1.4682	LARGE-LOSS	FOCAL	1	EFCAB13
TCGA.CK.5914.01A	17	45468782	45507145	10	-1.3352	LARGE-LOSS	FOCAL	1	EFCAB13
TCGA.AA.A010.01A	17	45486949	45623230	7	-1.6552	LARGE-LOSS	FOCAL	2	"EFCAB13,NPEPPS"
TCGA.A6.3808.01A	17	45608647	45673687	12	-2.3597	LARGE-LOSS	FOCAL	1	NPEPPS
TCGA.AA.A010.01A	17	45741476	45787816	22	-1.5812	LARGE-LOSS	FOCAL	2	"KPNB1,TBKBP1"
TCGA.AG.A01L.01A	17	46021932	46023939	5	-1.3293	LARGE-LOSS	FOCAL	1	PNPO
TCGA.AG.A00H.01A	17	46052488	46054028	4	-4.2355	LARGE-LOSS	FOCAL	1	CDK5RAP3
TCGA.AA.A010.01A	17	46103730	46114484	9	-2.4047	LARGE-LOSS	FOCAL	1	COPZ2
TCGA.AA.A010.01A	17	46128454	46135659	5	-1.387	LARGE-LOSS	FOCAL	1	NFE2L1
TCGA.AA.3982	17	46338676	46339611	3	-3.8774	LARGE-LOSS	FOCAL	1	SKAP1
TCGA.AA.A010.01A	17	46620378	46709800	18	-1.7282	LARGE-LOSS	FOCAL	8	"HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9"
TCGA.AA.A010.01A	17	47653532	47688605	7	-1.6561	LARGE-LOSS	FOCAL	2	"NXPH3,SPOP"
TCGA.AA.A010.01A	17	47904711	48068870	10	-1.5754	LARGE-LOSS	FOCAL	5	"DLX3,DLX4,FLJ45513,KAT7,TAC4"
TCGA.AA.A010.01A	17	48202205	48222466	9	-1.6946	LARGE-LOSS	FOCAL	2	"PPP1R9B,SAMD14"
TCGA.AA.A00N.01A	17	48274311	48275753	4	-1.4683	LARGE-LOSS	FOCAL	1	COL1A1
TCGA.G4.6626	17	48311845	48318327	4	-2.7219	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	48423454	48447789	13	-1.4491	LARGE-LOSS	FOCAL	2	"MRPL27,XYLT2"
TCGA.G4.6626	17	49908913	49910196	3	-4.1978	LARGE-LOSS	FOCAL	1	CA10
TCGA.AA.3693	17	49909328	49911621	3	-1.6122	LARGE-LOSS	FOCAL	1	CA10
TCGA.AA.3844	17	52767753	52780861	6	-1.5318	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	17	53194768	53196290	4	-1.7885	LARGE-LOSS	FOCAL	1	STXBP4
TCGA.AA.3982	17	53194768	53196290	4	-1.717	LARGE-LOSS	FOCAL	1	STXBP4
TCGA.F4.6704	17	53600306	53602052	3	-4.4291	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	17	53970741	53972223	3	-3.075	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	17	54099698	54102235	3	-2.2098	LARGE-LOSS	FOCAL	0	None
TCGA.F5.6702	17	54163046	54172590	11	-1.3839	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	17	54163635	54164879	4	-1.4153	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	17	54164095	54164879	3	-6.9521	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	17	54164095	54164879	3	-6.9809	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3673	17	54164095	54167852	6	-5.9784	LARGE-LOSS	FOCAL	0	None
TCGA.EF.5830	17	54164095	54167852	6	-6.746	LARGE-LOSS	FOCAL	0	None
TCGA.DC.4745	17	54164095	54172590	9	-6.3848	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01Z	17	55492465	55493130	3	-2.0586	LARGE-LOSS	FOCAL	1	MSI2
TCGA.AA.A010.01A	17	55945471	56166451	19	-1.4038	LARGE-LOSS	FOCAL	4	"CUEDC1,DYNLL2,SRSF1,VEZF1"
TCGA.AA.3558	17	56212513	56214093	3	-7.8865	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3728	17	56212513	56214093	3	-2.0972	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	17	56408575	56428716	5	-1.8338	LARGE-LOSS	FOCAL	1	SUPT4H1
TCGA.AA.A010.01A	17	56544194	56565066	3	-1.3235	LARGE-LOSS	FOCAL	1	HSF5
TCGA.AA.A010.01A	17	56568973	56582783	10	-2.3859	LARGE-LOSS	FOCAL	1	MTMR4
TCGA.AA.A010.01A	17	56584077	56619938	19	-1.5983	LARGE-LOSS	FOCAL	3	"C17orf47,MTMR4,SEPT4"
TCGA.DM.A28H	17	58777777	59169173	52	-2.0566	LARGE-LOSS	FOCAL	1	BCAS3
TCGA.AA.A010.01A	17	59469320	59490590	9	-2.3992	LARGE-LOSS	FOCAL	3	"BCAS3,C17orf82,TBX2"
TCGA.AA.A010.01A	17	60111097	60142437	5	-1.8359	LARGE-LOSS	FOCAL	1	MED13
TCGA.AM.5820	17	60413000	60429001	3	-2.1224	LARGE-LOSS	FOCAL	0	None
TCGA.QG.A5Z2	17	60789365	60791781	3	-4.796	LARGE-LOSS	FOCAL	1	10-Mar
TCGA.AA.A010.01A	17	61555244	61571682	22	-1.4955	LARGE-LOSS	FOCAL	1	ACE
TCGA.AA.A00N.01A	17	61681872	61712054	6	-1.4106	LARGE-LOSS	FOCAL	2	"MAP3K3,TACO1"
TCGA.AA.A010.01A	17	61681872	61791329	30	-1.7707	LARGE-LOSS	FOCAL	4	"LIMD2,MAP3K3,STRADA,TACO1"
TCGA.AA.A00N.01A	17	61824182	61864363	12	-1.3927	LARGE-LOSS	FOCAL	2	"CCDC47,DDX42"
TCGA.AA.A01F.01A	17	61906790	61907422	3	-1.8888	LARGE-LOSS	FOCAL	1	PSMC5
TCGA.A6.6648	17	61954111	61984298	5	-4.2791	LARGE-LOSS	FOCAL	2	"CSH1,GH2"
TCGA.AA.A00O.01A	17	62021066	62022702	4	-3.0356	LARGE-LOSS	FOCAL	1	SCN4A
TCGA.AA.A00N.01A	17	62473891	62515419	21	-1.4229	LARGE-LOSS	FOCAL	3	"CEP95,DDX5,POLG2"
TCGA.AG.3909.01A	17	62486866	62504663	11	-1.429	LARGE-LOSS	FOCAL	3	"CEP95,DDX5,POLG2"
TCGA.A6.3808.01A	17	62594453	62892820	14	-1.918	LARGE-LOSS	FOCAL	2	"LRRC37A3,SMURF2"
TCGA.DT.5265	17	63057650	64263584	397	-1.8684	LARGE-LOSS	FOCAL	4	"APOH,AXIN2,CEP112,RGS9"
TCGA.AA.A010.01A	17	63537523	63553887	3	-2.308	LARGE-LOSS	FOCAL	1	AXIN2
TCGA.AA.3862.01A	17	63553887	64062859	20	-1.4053	LARGE-LOSS	FOCAL	2	"AXIN2,CEP112"
TCGA.AA.3850	17	63732244	63733090	3	-4.16045	LARGE-LOSS	FOCAL	1	CEP112
TCGA.AD.6901	17	64417580	64419744	3	-6.5328	LARGE-LOSS	FOCAL	1	PRKCA
TCGA.AA.3848	17	64545562	64545921	3	-2.107	LARGE-LOSS	FOCAL	1	PRKCA
TCGA.A6.2672	17	64891065	64942693	34	-3.1774	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	17	65862598	66266932	45	-1.6998	LARGE-LOSS	FOCAL	6	"AMZ2,ARSG,BPTF,C17orf58,KPNA2,SLC16A6"
TCGA.AA.A010.01A	17	65962632	65989023	5	-2.0644	LARGE-LOSS	FOCAL	2	"BPTF,C17orf58"
TCGA.AA.A00N.01A	17	65978285	65989023	3	-1.4627	LARGE-LOSS	FOCAL	2	"BPTF,C17orf58"
TCGA.AA.A00N.01A	17	66033188	66252917	13	-2.1738	LARGE-LOSS	FOCAL	2	"AMZ2,KPNA2"
TCGA.AG.3909.01A	17	66033188	66252917	13	-1.7	LARGE-LOSS	FOCAL	2	"AMZ2,KPNA2"
TCGA.AA.A00N.01A	17	66265200	66303598	6	-1.3804	LARGE-LOSS	FOCAL	2	"ARSG,SLC16A6"
TCGA.AA.A03J	17	66420438	66424922	3	-4.1309	LARGE-LOSS	FOCAL	2	"PRKAR1A,WIPI1"
TCGA.AA.A00N.01A	17	67178262	67197610	13	-1.544	LARGE-LOSS	FOCAL	1	ABCA10
TCGA.AA.A00N.01A	17	68171152	70643661	12	-1.3805	LARGE-LOSS	FOCAL	3	"KCNJ2,SLC39A11,SOX9"
TCGA.AA.A010.01A	17	68171152	70645271	14	-1.3689	LARGE-LOSS	FOCAL	3	"KCNJ2,SLC39A11,SOX9"
TCGA.AA.3855	17	70400165	70437042	13	-2.5021	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A28H	17	70400165	70538292	54	-2.337	LARGE-LOSS	FOCAL	0	None
TCGA.AU.3779	17	70872696	70877778	3	-1.4253	LARGE-LOSS	FOCAL	1	SLC39A11
TCGA.AA.3986	17	71041437	71042080	3	-2.7766	LARGE-LOSS	FOCAL	1	SLC39A11
TCGA.AA.A010.01A	17	71167526	71204416	13	-1.6189	LARGE-LOSS	FOCAL	3	"COG1,FAM104A,SSTR2"
TCGA.AA.3972	17	72356764	72379697	6	-3.0742	LARGE-LOSS	FOCAL	2	"BTBD17,GPR142"
TCGA.AA.3664	17	72636067	72637592	3	-4.8584	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	72815834	72878653	30	-1.8158	LARGE-LOSS	FOCAL	4	"FADS6,FDXR,GRIN2C,TMEM104"
TCGA.CK.5914.01A	17	73013093	73058168	13	-1.3563	LARGE-LOSS	FOCAL	3	"ATP5H,ICT1,KCTD2"
TCGA.AA.A00N.01A	17	73013093	73209091	37	-1.3617	LARGE-LOSS	FOCAL	9	"ARMC7,ATP5H,HN1,ICT1,KCTD2,NT5C,NUP85,SLC16A5,SUMO2"
TCGA.AG.A025.01A	17	73016368	73016969	2	-6.5647	LARGE-LOSS	FOCAL	1	ICT1
TCGA.AA.A010.01A	17	73034975	73059026	10	-2.1702	LARGE-LOSS	FOCAL	2	"ATP5H,KCTD2"
TCGA.AA.A010.01A	17	73258531	73282366	13	-1.5271	LARGE-LOSS	FOCAL	3	"MIF4GD,MRPS7,SLC25A19"
TCGA.AA.A010.01A	17	73501586	73539447	16	-1.6059	LARGE-LOSS	FOCAL	3	"CASKIN2,LLGL2,TSEN54"
TCGA.AG.3909.01A	17	73519300	73520292	3	-1.772	LARGE-LOSS	FOCAL	1	TSEN54
TCGA.AA.A010.01A	17	74208393	74287049	19	-1.583	LARGE-LOSS	FOCAL	3	"QRICH2,RNF157,UBALD2"
TCGA.AA.A010.01A	17	74524580	74539830	10	-2.3372	LARGE-LOSS	FOCAL	2	"CYGB,PRCD"
TCGA.AA.A00N.01A	17	74539830	74563485	6	-1.8131	LARGE-LOSS	FOCAL	2	"PRCD,ST6GALNAC2"
TCGA.AG.3909.01A	17	74574782	74625047	8	-1.3864	LARGE-LOSS	FOCAL	2	"ST6GALNAC1,ST6GALNAC2"
TCGA.AA.A010.01A	17	74712695	74750108	19	-1.6293	LARGE-LOSS	FOCAL	4	"JMJD6,METTL23,MFSD11,SRSF2"
TCGA.AA.A00N.01A	17	74717832	74750108	16	-1.8553	LARGE-LOSS	FOCAL	4	"JMJD6,METTL23,MFSD11,SRSF2"
TCGA.AA.3972	17	74920196	74926604	3	-1.9964	LARGE-LOSS	FOCAL	1	MGAT5B
TCGA.AA.A010.01A	17	76211983	76354478	7	-1.6666	LARGE-LOSS	FOCAL	3	"BIRC5,SOCS3,TMEM235"
TCGA.AG.3599	17	77243062	77246389	3	-4.7761	LARGE-LOSS	FOCAL	1	RBFOX3
TCGA.AA.3811	17	77245659	77246389	3	-3.0808	LARGE-LOSS	FOCAL	1	RBFOX3
TCGA.AA.3986	17	77245659	77246389	3	-1.4471	LARGE-LOSS	FOCAL	1	RBFOX3
TCGA.AG.3893	17	77245659	77246389	3	-1.3226	LARGE-LOSS	FOCAL	1	RBFOX3
TCGA.AA.3527	17	77245659	77252526	3	-3.4433	LARGE-LOSS	FOCAL	1	RBFOX3
TCGA.AA.A010.01A	17	77753102	77812745	12	-2.2324	LARGE-LOSS	FOCAL	3	"CBX2,CBX4,CBX8"
TCGA.AA.A010.01A	17	78011857	78023650	5	-2.0365	LARGE-LOSS	FOCAL	1	CCDC40
TCGA.AA.A00N.01A	17	78109206	78117906	10	-1.6664	LARGE-LOSS	FOCAL	1	EIF4A3
TCGA.AG.3909.01A	17	78111899	78117906	7	-1.4925	LARGE-LOSS	FOCAL	1	EIF4A3
TCGA.AA.A010.01A	17	78215506	78246988	11	-1.7581	LARGE-LOSS	FOCAL	2	"RNF213,SLC26A11"
TCGA.AA.A01I.01A	17	78263408	78265389	3	-5.4725	LARGE-LOSS	FOCAL	1	RNF213
TCGA.AA.A01K.01A	17	78320557	78326699	6	-4.3222	LARGE-LOSS	FOCAL	1	RNF213
TCGA.AA.A010.01A	17	78409891	78449756	6	-1.7967	LARGE-LOSS	FOCAL	2	"ENDOV,NPTX1"
TCGA.A6.6653	17	78634299	78642619	4	-1.3572	LARGE-LOSS	FOCAL	1	RPTOR
TCGA.A6.3808.01A	17	78936681	79174081	57	-1.4401	LARGE-LOSS	FOCAL	5	"AATK,BAIAP2,CEP131,CHMP6,RPTOR"
TCGA.AA.A010.01A	17	79084631	79108126	19	-2.143	LARGE-LOSS	FOCAL	2	"AATK,BAIAP2"
TCGA.A6.3808.01A	17	79202721	79517252	69	-1.7226	LARGE-LOSS	FOCAL	9	"ACTG1,BAHCC1,C17orf70,C17orf89,ENTHD2,FSCN2,LOC100130370,SLC38A10,TMEM105"
TCGA.CM.6172	17	79255997	79256256	3	-2.3288	LARGE-LOSS	FOCAL	1	SLC38A10
TCGA.AA.A010.01A	17	79917307	79943332	5	-1.6592	LARGE-LOSS	FOCAL	2	"ASPSCR1,NOTUM"
TCGA.AA.A010.01A	17	79967304	79980618	10	-1.495	LARGE-LOSS	FOCAL	2	"ASPSCR1,STRA13"
TCGA.AA.A010.01A	17	79981509	80022647	43	-2.5415	LARGE-LOSS	FOCAL	6	"DCXR,DUS1L,GPS1,LRRC45,RAC3,RFNG"
TCGA.A6.3808.01A	17	79982506	80054148	65	-2.1588	LARGE-LOSS	FOCAL	7	"DCXR,DUS1L,FASN,GPS1,LRRC45,RAC3,RFNG"
TCGA.AA.A010.01A	17	80037002	80071171	28	-1.7246	LARGE-LOSS	FOCAL	2	"CCDC57,FASN"
TCGA.AA.A010.01A	17	80676741	80708275	11	-2.0802	LARGE-LOSS	FOCAL	2	"FN3K,FN3KRP"
TCGA.AA.A00N.01A	17	80841968	80879329	11	-1.9256	LARGE-LOSS	FOCAL	1	TBCD
TCGA.AA.A010.01A	17	80904718	81051974	12	-1.4153	LARGE-LOSS	FOCAL	2	"B3GNTL1,METRNL"
TCGA.AG.A01N.01A	17	80992847	81042842	3	-1.6079	LARGE-LOSS	FOCAL	2	"B3GNTL1,METRNL"
TCGA.DM.A1D6	18	100948	164284	7	-3.5748	LARGE-LOSS	FOCAL	1	USP14
TCGA.AG.A023.01A	18	163296	198028	8	-1.5266	LARGE-LOSS	FOCAL	1	USP14
TCGA.AA.A01I.01A	18	690490	690988	2	-4.8629	LARGE-LOSS	FOCAL	1	ENOSF1
TCGA.AA.A01C.01A	18	693799	706432	4	-1.4133	LARGE-LOSS	FOCAL	1	ENOSF1
TCGA.AA.3982	18	1080761	1085520	5	-3.4624	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	18	1890176	1900056	5	-1.9625	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D6	18	3056687	3058406	3	-3.6035	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A02R.01A	18	3089106	3090606	3	-5.0461	LARGE-LOSS	FOCAL	1	MYOM1
TCGA.AG.3909.01A	18	3253195	3457363	10	-1.3708	LARGE-LOSS	FOCAL	3	"MYL12A,MYL12B,TGIF1"
TCGA.AA.A00N.01A	18	3253195	3508516	14	-1.3627	LARGE-LOSS	FOCAL	4	"DLGAP1,MYL12A,MYL12B,TGIF1"
TCGA.CM.4748	18	3457243	3597524	48	-1.7569	LARGE-LOSS	FOCAL	2	"DLGAP1,TGIF1"
TCGA.AA.A00N.01A	18	3874092	5293154	7	-1.3466	LARGE-LOSS	FOCAL	3	"C18orf42,DLGAP1,ZBTB14"
TCGA.AA.3982	18	4182979	4191086	5	-1.6919	LARGE-LOSS	FOCAL	1	DLGAP1
TCGA.AA.3811	18	4184219	4191086	4	-1.7089	LARGE-LOSS	FOCAL	1	DLGAP1
TCGA.D5.6533	18	4429638	4470921	40	-2.6999	LARGE-LOSS	FOCAL	1	DLGAP1
TCGA.DY.A1DF	18	4453497	4454149	3	-6.844	LARGE-LOSS	FOCAL	1	DLGAP1
TCGA.AA.3811	18	4563164	4564543	5	-1.8093	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	18	4564289	4564543	3	-5.747	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	18	5290810	5293154	3	-3.3356	LARGE-LOSS	FOCAL	1	ZBTB14
TCGA.AG.4009.01A	18	5290810	5293154	3	-1.6459	LARGE-LOSS	FOCAL	1	ZBTB14
TCGA.DC.6154	18	5361051	8979482	1628	-3.819	LARGE-LOSS	FOCAL	9	"ARHGAP28,EPB41L3,L3MBTL4,LAMA1,LRRC30,MTCL1,PTPRM,RAB12,TMEM200C"
TCGA.AA.A01C.01A	18	5437970	5891919	8	-1.3397	LARGE-LOSS	FOCAL	2	"EPB41L3,TMEM200C"
TCGA.CM.4746	18	5930479	5930978	3	-1.3723	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3561	18	5963904	5969291	12	-3.4245	LARGE-LOSS	FOCAL	1	L3MBTL4
TCGA.AG.3584	18	5967109	5978257	13	-2.466	LARGE-LOSS	FOCAL	1	L3MBTL4
TCGA.D5.6532	18	6432708	6451694	16	-5.2254	LARGE-LOSS	FOCAL	0	None
TCGA.DC.4745	18	8555028	8555807	3	-8.2845	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	18	8609695	8720294	9	-1.3853	LARGE-LOSS	FOCAL	2	"MTCL1,RAB12"
TCGA.AA.A00N.01A	18	9104119	9134134	8	-1.6254	LARGE-LOSS	FOCAL	1	NDUFV2
TCGA.AA.A010.01A	18	9117812	9134134	6	-2.1979	LARGE-LOSS	FOCAL	1	NDUFV2
TCGA.AA.A010.01A	18	9577014	9614160	8	-1.3457	LARGE-LOSS	FOCAL	1	PPP4R1
TCGA.SS.A7HO	18	10006521	10038209	24	-5.5698	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	18	10526026	10546286	8	-1.5619	LARGE-LOSS	FOCAL	1	NAPG
TCGA.AA.3941	18	11325447	11336272	6	-1.754	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	18	11451313	11451658	3	-2.9018	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	18	11752384	11753555	3	-1.6857	LARGE-LOSS	FOCAL	1	GNAL
TCGA.AG.4009.01A	18	11752384	11753555	3	-1.4074	LARGE-LOSS	FOCAL	1	GNAL
TCGA.CK.5914.01A	18	11752384	11999016	21	-1.5202	LARGE-LOSS	FOCAL	4	"CHMP1B,GNAL,IMPA2,MPPE1"
TCGA.AA.3941	18	12114653	12163128	7	-1.763	LARGE-LOSS	FOCAL	1	ANKRD62
TCGA.AA.3982	18	12162189	12163128	3	-1.8872	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6626	18	12189735	12210446	3	-4.9246	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	18	12308239	12310905	3	-2.2159	LARGE-LOSS	FOCAL	1	TUBB6
TCGA.AA.A010.01A	18	12658500	12680614	5	-1.8965	LARGE-LOSS	FOCAL	2	"CEP76,PSMG2"
TCGA.AG.3909.01A	18	12951778	12986850	9	-1.6937	LARGE-LOSS	FOCAL	1	SEH1L
TCGA.AA.A00N.01A	18	12951778	13001409	11	-2.1058	LARGE-LOSS	FOCAL	2	"CEP192,SEH1L"
TCGA.CK.5914.01A	18	12951778	13001409	11	-1.6943	LARGE-LOSS	FOCAL	2	"CEP192,SEH1L"
TCGA.AA.A00N.01A	18	13086989	13387655	16	-1.5392	LARGE-LOSS	FOCAL	2	"CEP192,LDLRAD4"
TCGA.CK.5914.01A	18	13089438	13104929	8	-1.5858	LARGE-LOSS	FOCAL	1	CEP192
TCGA.AG.3909.01A	18	13095480	13104929	6	-1.822	LARGE-LOSS	FOCAL	1	CEP192
TCGA.AG.3598	18	13436870	13462192	16	-4.0883	LARGE-LOSS	FOCAL	1	LDLRAD4
TCGA.AG.3584	18	13455057	13477713	14	-2.9119	LARGE-LOSS	FOCAL	1	LDLRAD4
TCGA.AA.A00N.01A	18	13731478	13742439	6	-1.416	LARGE-LOSS	FOCAL	1	RNMT
TCGA.A6.3808.01A	18	13731478	18539749	59	-1.4274	LARGE-LOSS	FOCAL	7	"ANKRD30B,MC2R,MC5R,POTEC,RNMT,ROCK1,ZNF519"
TCGA.DM.A1DB	18	13801918	13804767	7	-6.5362	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	18	14511844	14542906	8	-1.7878	LARGE-LOSS	FOCAL	1	POTEC
TCGA.AA.3982	18	15138030	15158340	4	-4.3504	LARGE-LOSS	FOCAL	0	None
TCGA.4T.AA8H	18	20054210	20058107	4	-8.5133	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5661	18	20861915	20891026	11	-4.9028	LARGE-LOSS	FOCAL	1	TMEM241
TCGA.AA.A00N.01A	18	21084276	21089139	4	-1.889	LARGE-LOSS	FOCAL	1	C18orf8
TCGA.4N.A93T	18	21103970	21203432	34	-4.0173	LARGE-LOSS	FOCAL	3	"ANKRD29,C18orf8,NPC1"
TCGA.AA.A02H.01A	18	21119290	21121250	5	-3.5562	LARGE-LOSS	FOCAL	1	NPC1
TCGA.AA.A00N.01A	18	21148780	21197652	6	-1.7114	LARGE-LOSS	FOCAL	2	"ANKRD29,NPC1"
TCGA.AG.3909.01A	18	21148780	21209780	7	-1.3369	LARGE-LOSS	FOCAL	2	"ANKRD29,NPC1"
TCGA.AG.3909.01A	18	21946817	22017890	7	-1.3836	LARGE-LOSS	FOCAL	2	"IMPACT,OSBPL1A"
TCGA.AA.A00N.01A	18	21946817	22030681	14	-1.3487	LARGE-LOSS	FOCAL	2	"IMPACT,OSBPL1A"
TCGA.CK.5914.01A	18	21948197	22025296	9	-1.6654	LARGE-LOSS	FOCAL	2	"IMPACT,OSBPL1A"
TCGA.AG.3890	18	22045832	23772572	669	-1.6402	LARGE-LOSS	FOCAL	4	"HRH4,PSMA8,SS18,ZNF521"
TCGA.DM.A28H	18	22493851	25992535	1133	-2.254	LARGE-LOSS	FOCAL	8	"AQP4,CDH2,CHST9,KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AF.3911	18	23741057	24349177	192	-1.3441	LARGE-LOSS	FOCAL	3	"KCTD1,PSMA8,TAF4B"
TCGA.AA.A00N.01A	18	24436165	24445538	5	-1.68	LARGE-LOSS	FOCAL	1	AQP4
TCGA.AA.3844	18	24872622	28169374	965	-1.5076	LARGE-LOSS	FOCAL	1	CDH2
TCGA.AD.6965	18	26195766	26196111	3	-4.9251	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3833	18	26195994	26196129	3	-1.7131	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6648	18	27618004	27624754	3	-3.7429	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	18	27858544	27862638	3	-7.99685	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	18	27878805	28673465	30	-1.356	LARGE-LOSS	FOCAL	2	"DSC2,DSC3"
TCGA.AA.A010.01A	18	29237892	29264227	3	-1.946	LARGE-LOSS	FOCAL	1	B4GALT6
TCGA.CK.5914.01A	18	29769964	29782834	5	-1.4061	LARGE-LOSS	FOCAL	1	MEP1B
TCGA.AA.3941	18	30490217	32362669	407	-1.3783	LARGE-LOSS	FOCAL	4	"ASXL3,CCDC178,DTNA,NOL4"
TCGA.AA.3833	18	30887350	30894261	3	-1.4174	LARGE-LOSS	FOCAL	1	CCDC178
TCGA.AA.3982	18	32263056	32263678	3	-7.199	LARGE-LOSS	FOCAL	1	DTNA
TCGA.AA.A00N.01A	18	32822395	32843890	7	-1.3725	LARGE-LOSS	FOCAL	2	"ZNF397,ZSCAN30"
TCGA.AG.3909.01A	18	32822395	32843890	7	-2.348	LARGE-LOSS	FOCAL	2	"ZNF397,ZSCAN30"
TCGA.CK.5914.01A	18	32822395	32843890	7	-1.5233	LARGE-LOSS	FOCAL	2	"ZNF397,ZSCAN30"
TCGA.AA.A010.01A	18	32833374	32888087	6	-1.5947	LARGE-LOSS	FOCAL	2	"ZNF397,ZSCAN30"
TCGA.AG.3909.01A	18	32948271	32953789	4	-2.0969	LARGE-LOSS	FOCAL	1	ZNF396
TCGA.AG.3909.01A	18	33554818	33558780	3	-2.137	LARGE-LOSS	FOCAL	1	C18orf21
TCGA.AG.3909.01A	18	33702008	33716214	7	-2.2332	LARGE-LOSS	FOCAL	2	"ELP2,SLC39A6"
TCGA.AG.3909.01A	18	33718203	33775178	19	-1.333	LARGE-LOSS	FOCAL	2	"ELP2,MOCOS"
TCGA.AA.A02O	18	33828979	33831188	5	-1.3672	LARGE-LOSS	FOCAL	1	MOCOS
TCGA.AG.3598	18	34031319	34037552	5	-8.2685	LARGE-LOSS	FOCAL	1	FHOD3
TCGA.EI.6513	18	34049584	34583010	181	-4.3528	LARGE-LOSS	FOCAL	3	"FHOD3,KIAA1328,TPGS2"
TCGA.D5.5540	18	34069681	34429126	155	-4.6216	LARGE-LOSS	FOCAL	3	"FHOD3,KIAA1328,TPGS2"
TCGA.CM.5862	18	34072689	34126814	32	-5.6475	LARGE-LOSS	FOCAL	1	FHOD3
TCGA.DM.A288	18	34907012	34916799	3	-7.1644	LARGE-LOSS	FOCAL	1	CELF4
TCGA.QG.A5YX	18	34907012	34976493	22	-3.7415	LARGE-LOSS	FOCAL	1	CELF4
TCGA.AA.3864	18	35331183	35333333	3	-1.3314	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3977	18	35332794	35334768	3	-1.4784	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	18	35575471	35720304	59	-1.6341	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	18	35687895	42308171	1996	-1.5043	LARGE-LOSS	FOCAL	4	"PIK3C3,RIT2,SETBP1,SYT4"
TCGA.AA.3941	18	35702826	42223720	1974	-1.407	LARGE-LOSS	FOCAL	3	"PIK3C3,RIT2,SYT4"
TCGA.5M.AATA	18	35838239	38460347	805	-1.4508	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6677	18	36978348	37252486	58	-1.6835	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3693	18	36998209	37114683	22	-5.4084	LARGE-LOSS	FOCAL	0	None
TCGA.AY.5543	18	37014411	37132106	21	-2.151	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4308	18	37046878	37078661	10	-2.7196	LARGE-LOSS	FOCAL	0	None
TCGA.EF.5830	18	38714498	38724648	3	-7.0615	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3594	18	39133745	39134841	3	-7.5338	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	18	41698003	41873026	54	-1.5966	LARGE-LOSS	FOCAL	0	None
TCGA.AY.4071	18	41976885	41978624	3	-1.7953	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6648	18	42299048	42307987	3	-1.6058	LARGE-LOSS	FOCAL	1	SETBP1
TCGA.AA.3870	18	42379510	42414449	11	-2.0694	LARGE-LOSS	FOCAL	1	SETBP1
TCGA.AF.2689	18	42379510	42485186	42	-1.9361	LARGE-LOSS	FOCAL	1	SETBP1
TCGA.CK.4952.01A	18	42796698	42802625	2	-5.8147	LARGE-LOSS	FOCAL	1	SLC14A2
TCGA.F5.6811.01A	18	42808542	42809119	2	-1.3334	LARGE-LOSS	FOCAL	1	SLC14A2
TCGA.DY.A1DG	18	42972153	43702732	302	-1.5945	LARGE-LOSS	FOCAL	7	"ATP5A1,EPG5,HAUS1,PSTPIP2,SIGLEC15,SLC14A1,SLC14A2"
TCGA.AG.A036.01A	18	43622159	43631574	5	-1.6115	LARGE-LOSS	FOCAL	1	PSTPIP2
TCGA.AA.A00N.01A	18	43664212	43674962	7	-1.9427	LARGE-LOSS	FOCAL	1	ATP5A1
TCGA.AG.3909.01A	18	43664212	43674962	7	-2.5476	LARGE-LOSS	FOCAL	1	ATP5A1
TCGA.AA.3509.01A	18	43664212	43707970	17	-1.3681	LARGE-LOSS	FOCAL	2	"ATP5A1,HAUS1"
TCGA.A6.3808.01A	18	43664212	43795798	18	-1.4246	LARGE-LOSS	FOCAL	3	"ATP5A1,C18orf25,HAUS1"
TCGA.A6.3808.01A	18	44435306	44559913	10	-1.3777	LARGE-LOSS	FOCAL	6	"KATNAL2,PIAS2,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AA.A010.01A	18	44470496	44559913	8	-2.1609	LARGE-LOSS	FOCAL	6	"KATNAL2,PIAS2,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AG.A008.01A	18	44542700	44548627	2	-2.7451	LARGE-LOSS	FOCAL	3	"KATNAL2,TCEB3CL,TCEB3CL2"
TCGA.CM.6165.01A	18	44542700	44548627	2	-1.6005	LARGE-LOSS	FOCAL	3	"KATNAL2,TCEB3CL,TCEB3CL2"
TCGA.DM.A282.01A	18	44542700	44548627	2	-1.8948	LARGE-LOSS	FOCAL	3	"KATNAL2,TCEB3CL,TCEB3CL2"
TCGA.AF.3914.01A	18	44542700	44559333	3	-2.1938	LARGE-LOSS	FOCAL	5	"KATNAL2,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AG.3909.01A	18	44542700	44559913	4	-2.011	LARGE-LOSS	FOCAL	5	"KATNAL2,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AG.4009.01A	18	44542700	44559913	6	-1.7778	LARGE-LOSS	FOCAL	5	"KATNAL2,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AA.3509.01A	18	44554544	44555121	2	-5.3255	LARGE-LOSS	FOCAL	3	"KATNAL2,TCEB3C,TCEB3CL"
TCGA.AA.3980.01A	18	44554544	44555121	2	-1.7379	LARGE-LOSS	FOCAL	3	"KATNAL2,TCEB3C,TCEB3CL"
TCGA.AG.3909.01A	18	44656568	45374809	9	-1.7159	LARGE-LOSS	FOCAL	4	"HDHD2,IER3IP1,SKOR2,SMAD2"
TCGA.AA.A02E.01A	18	44662658	46447723	26	-1.4964	LARGE-LOSS	FOCAL	7	"CTIF,HDHD2,IER3IP1,SKOR2,SMAD2,SMAD7,ZBTB7C"
TCGA.DY.A1DG	18	45955019	46482861	218	-1.6292	LARGE-LOSS	FOCAL	2	"CTIF,SMAD7"
TCGA.AG.A01W.01A	18	46063603	46067866	7	-1.587	LARGE-LOSS	FOCAL	1	CTIF
TCGA.AA.A010.01A	18	46468798	46476133	3	-2.7619	LARGE-LOSS	FOCAL	1	SMAD7
TCGA.A6.2681	18	46873867	46885442	3	-4.3996	LARGE-LOSS	FOCAL	1	DYM
TCGA.AG.3909.01A	18	47008649	47017696	7	-2.6426	LARGE-LOSS	FOCAL	3	"C18orf32,RPL17,RPL17-C18orf32"
TCGA.CK.5914.01A	18	47008649	47101712	13	-1.4677	LARGE-LOSS	FOCAL	4	"C18orf32,LIPG,RPL17,RPL17-C18orf32"
TCGA.AG.3909.01A	18	47088630	47329035	18	-1.7496	LARGE-LOSS	FOCAL	2	"ACAA2,LIPG"
TCGA.AA.A010.01A	18	47116780	47329035	10	-1.8456	LARGE-LOSS	FOCAL	2	"ACAA2,LIPG"
TCGA.AA.3844	18	47195879	47196775	3	-7.0047	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	18	47787387	47911547	26	-2.0533	LARGE-LOSS	FOCAL	4	"CFAP53,CXXC1,MBD1,SKA1"
TCGA.AA.3655	18	47856909	49146978	482	-5.1421	LARGE-LOSS	FOCAL	7	"ELAC1,MAPK4,ME2,MEX3C,MRO,SKA1,SMAD4"
TCGA.AG.3893	18	47963963	48846962	307	-2.1619	LARGE-LOSS	FOCAL	6	"ELAC1,MAPK4,ME2,MEX3C,MRO,SMAD4"
TCGA.AA.3870	18	48008439	48632382	219	-1.6984	LARGE-LOSS	FOCAL	5	"ELAC1,MAPK4,ME2,MRO,SMAD4"
TCGA.EI.6509	18	48179663	48629912	139	-4.2008	LARGE-LOSS	FOCAL	5	"ELAC1,MAPK4,ME2,MRO,SMAD4"
TCGA.AA.3664	18	48285997	50715773	923	-4.1753	LARGE-LOSS	FOCAL	6	"DCC,ELAC1,ME2,MEX3C,MRO,SMAD4"
TCGA.4N.A93T	18	48345100	48568270	62	-4.4968	LARGE-LOSS	FOCAL	4	"ELAC1,ME2,MRO,SMAD4"
TCGA.AG.3592	18	48366936	48708547	80	-1.5714	LARGE-LOSS	FOCAL	4	"ELAC1,ME2,MEX3C,SMAD4"
TCGA.D5.6932	18	48382667	48697935	71	-2.9582	LARGE-LOSS	FOCAL	3	"ELAC1,ME2,SMAD4"
TCGA.AD.A5EK	18	48422984	48571371	29	-4.0475	LARGE-LOSS	FOCAL	3	"ELAC1,ME2,SMAD4"
TCGA.AZ.4308	18	48491523	48663824	26	-2.8069	LARGE-LOSS	FOCAL	2	"ELAC1,SMAD4"
TCGA.A6.6650	18	48511620	48568270	11	-5.1898	LARGE-LOSS	FOCAL	2	"ELAC1,SMAD4"
TCGA.AG.3728	18	48518390	48663824	20	-2.3688	LARGE-LOSS	FOCAL	1	SMAD4
TCGA.DT.5265	18	48519656	50451396	758	-1.6403	LARGE-LOSS	FOCAL	3	"DCC,MEX3C,SMAD4"
TCGA.AA.3811	18	48838325	48840387	3	-2.7003	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3655	18	49186916	49351748	78	-5.6254	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	18	49283981	49290763	4	-2.5215	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	18	49595251	49758946	42	-1.8207	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	18	49762796	49785637	10	-4.3068	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	18	49785733	49848214	28	-1.5019	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3870	18	49952738	50124653	64	-2.0219	LARGE-LOSS	FOCAL	1	DCC
TCGA.AG.A01Y	18	50167427	50170385	3	-6.9968	LARGE-LOSS	FOCAL	1	DCC
TCGA.AA.3811	18	51065246	51083197	3	-4.6164	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	18	51078460	51084735	3	-7.5558	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3561	18	51208075	51210639	3	-9.8317	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.5407	18	51208075	51210639	3	-4.2639	LARGE-LOSS	FOCAL	0	None
TCGA.AU.3779	18	51652727	52931762	320	-1.8928	LARGE-LOSS	FOCAL	8	"C18orf54,CCDC68,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4"
TCGA.AA.A00N.01A	18	51797689	51807037	4	-1.5759	LARGE-LOSS	FOCAL	1	POLI
TCGA.AG.3909.01A	18	51797689	51858065	12	-1.4032	LARGE-LOSS	FOCAL	2	"POLI,STARD6"
TCGA.AG.3909.01A	18	51863448	51892042	7	-2.2447	LARGE-LOSS	FOCAL	2	"C18orf54,STARD6"
TCGA.AA.A00N.01A	18	51863448	51898828	8	-1.8642	LARGE-LOSS	FOCAL	2	"C18orf54,STARD6"
TCGA.AG.3909.01A	18	51898828	51904483	3	-1.4458	LARGE-LOSS	FOCAL	1	C18orf54
TCGA.EI.6512	18	52381168	52393743	3	-4.7512	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	18	53780444	53788783	4	-7.9726	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	18	53780444	53788783	4	-4.0972	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3893	18	54599046	54600507	3	-4.3118	LARGE-LOSS	FOCAL	1	WDR7
TCGA.DM.A0XD	18	54612861	54626603	3	-7.4674	LARGE-LOSS	FOCAL	1	WDR7
TCGA.DY.A1DG	18	54612861	54626603	4	-8.0115	LARGE-LOSS	FOCAL	1	WDR7
TCGA.AA.3850	18	54624841	54626603	3	-8.48445	LARGE-LOSS	FOCAL	1	WDR7
TCGA.AA.3941	18	54624841	54626603	3	-9.7601	LARGE-LOSS	FOCAL	1	WDR7
TCGA.DM.A1D7	18	54624841	54626603	3	-6.996	LARGE-LOSS	FOCAL	1	WDR7
TCGA.AA.3844	18	54986640	54987388	3	-6.1878	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	18	55021596	55027199	3	-2.1199	LARGE-LOSS	FOCAL	1	ST8SIA3
TCGA.AG.3909.01A	18	55021596	55027199	3	-2.1287	LARGE-LOSS	FOCAL	1	ST8SIA3
TCGA.AG.3909.01A	18	55240431	55329678	23	-1.5537	LARGE-LOSS	FOCAL	4	"ATP8B1,FECH,LOC100505549,NARS"
TCGA.AA.A00N.01A	18	55912601	55919173	3	-1.6787	LARGE-LOSS	FOCAL	1	NEDD4L
TCGA.AA.A010.01A	18	55912601	55919173	3	-2.1104	LARGE-LOSS	FOCAL	1	NEDD4L
TCGA.AA.3713	18	55931671	55935961	3	-4.7456	LARGE-LOSS	FOCAL	1	NEDD4L
TCGA.A6.3808.01A	18	56587570	56651527	9	-2.243	LARGE-LOSS	FOCAL	1	ZNF532
TCGA.AG.3909.01A	18	56816695	57022503	22	-1.7232	LARGE-LOSS	FOCAL	5	"CPLX4,GRP,LMAN1,RAX,SEC11C"
TCGA.AA.3941	18	57341888	57343256	3	-4.1951	LARGE-LOSS	FOCAL	1	CCBE1
TCGA.AA.3850	18	57341888	57343665	4	-1.64015	LARGE-LOSS	FOCAL	1	CCBE1
TCGA.AA.3811	18	57716522	57719130	6	-1.354	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	18	57716522	59117205	452	-1.3905	LARGE-LOSS	FOCAL	1	MC4R
TCGA.AA.3850	18	58468850	58487230	11	-2.97655	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	18	58473802	58477924	5	-6.2765	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3549	18	58849690	58851793	4	-5.3319	LARGE-LOSS	FOCAL	0	None
TCGA.EF.5830	18	59509154	59509285	3	-7.1415	LARGE-LOSS	FOCAL	1	RNF152
TCGA.AG.3909.01A	18	60015362	60035884	8	-2.1552	LARGE-LOSS	FOCAL	1	TNFRSF11A
TCGA.AA.3509.01A	18	60027139	60033871	3	-1.7859	LARGE-LOSS	FOCAL	1	TNFRSF11A
TCGA.AZ.4684.01A	18	60027139	60033871	3	-1.7599	LARGE-LOSS	FOCAL	1	TNFRSF11A
TCGA.AA.3527	18	60028007	60028243	3	-3.763	LARGE-LOSS	FOCAL	1	TNFRSF11A
TCGA.AA.A010.01A	18	60985255	61011597	5	-2.172	LARGE-LOSS	FOCAL	2	"BCL2,KDSR"
TCGA.AG.4021	18	61253489	61648547	139	-2.9754	LARGE-LOSS	FOCAL	9	"HMSD,SERPINB10,SERPINB11,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB7,SERPINB8"
TCGA.AA.3509.01A	18	61255838	61262226	7	-1.4378	LARGE-LOSS	FOCAL	1	SERPINB13
TCGA.AZ.4684.01A	18	61255838	61262226	7	-1.4405	LARGE-LOSS	FOCAL	1	SERPINB13
TCGA.AA.3549	18	61500947	64524888	967	-2.7721	LARGE-LOSS	FOCAL	6	"CDH19,CDH7,HMSD,SERPINB10,SERPINB2,SERPINB8"
TCGA.CK.5914.01A	18	61597232	61654059	13	-1.4283	LARGE-LOSS	FOCAL	3	"HMSD,SERPINB10,SERPINB8"
TCGA.AG.3909.01A	18	61600265	61654059	12	-2.4562	LARGE-LOSS	FOCAL	3	"HMSD,SERPINB10,SERPINB8"
TCGA.AA.A00N.01A	18	61620625	63430097	11	-1.796	LARGE-LOSS	FOCAL	3	"CDH7,HMSD,SERPINB8"
TCGA.AG.4021	18	61649169	61654462	4	-9.9706	LARGE-LOSS	FOCAL	1	SERPINB8
TCGA.AG.4021	18	61660838	62155736	190	-3.003	LARGE-LOSS	FOCAL	0	None
TCGA.QL.A97D	18	63564564	63585871	10	-3.2333	LARGE-LOSS	FOCAL	0	None
TCGA.4T.AA8H	18	63637561	63640123	3	-6.9833	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6138	18	63907595	63911360	5	-2.2263	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	18	64149700	64252800	24	-2.63765	LARGE-LOSS	FOCAL	1	CDH19
TCGA.AA.3941	18	64150295	64176618	10	-5.3559	LARGE-LOSS	FOCAL	1	CDH19
TCGA.AA.3864	18	64169015	64171510	3	-2.5683	LARGE-LOSS	FOCAL	1	CDH19
TCGA.A6.2681	18	64743623	64801044	18	-1.9042	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	18	65178180	65182232	5	-1.8466	LARGE-LOSS	FOCAL	1	DSEL
TCGA.CK.5914.01A	18	65178180	65182232	5	-1.8959	LARGE-LOSS	FOCAL	1	DSEL
TCGA.CM.5864	18	65260204	65267311	3	-9.7221	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A8F8	18	65304679	65306257	3	-6.1534	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56L	18	65304679	65307106	4	-5.5764	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AATA	18	65830605	66169765	147	-1.3442	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	18	65948605	65949008	6	-1.7582	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	18	66351356	66381064	10	-1.6419	LARGE-LOSS	FOCAL	1	TMX3
TCGA.AA.A00N.01A	18	66367586	66381064	5	-1.9052	LARGE-LOSS	FOCAL	1	TMX3
TCGA.AA.3561	18	66378704	66381557	6	-5.8295	LARGE-LOSS	FOCAL	1	TMX3
TCGA.AA.3530	18	66714831	66717717	3	-9.7363	LARGE-LOSS	FOCAL	1	CCDC102B
TCGA.AA.3660	18	66751083	66752453	4	-7.4192	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3664	18	66751124	66751608	4	-8.704	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3858	18	66751124	66752453	5	-8.6071	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3842	18	66751327	66752453	4	-8.7697	LARGE-LOSS	FOCAL	0	None
TCGA.EI.7004	18	67208391	67217270	4	-2.2896	LARGE-LOSS	FOCAL	1	DOK6
TCGA.AG.3575	18	67210331	67217270	3	-7.524	LARGE-LOSS	FOCAL	1	DOK6
TCGA.AG.4015	18	67210331	67217270	3	-7.4879	LARGE-LOSS	FOCAL	1	DOK6
TCGA.G5.6233	18	68271138	68272155	3	-4.2618	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3893	18	69131394	69131744	3	-4.7349	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3864	18	69378851	69379111	4	-1.8619	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	18	69378851	69380498	5	-2.6093	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	18	70502451	70534421	6	-2.0524	LARGE-LOSS	FOCAL	1	NETO1
TCGA.AA.3971	18	70959011	70960057	3	-6.7728	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	18	71150216	71159846	12	-4.35645	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	18	71245885	71248615	5	-2.1575	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.6600	18	71427892	71428939	3	-6.1791	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	18	71994132	72014886	4	-2.3777	LARGE-LOSS	FOCAL	1	C18orf63
TCGA.AA.3982	18	72453763	72457957	3	-4.6135	LARGE-LOSS	FOCAL	1	ZNF407
TCGA.AA.3850	18	72598973	72599981	3	-5.53125	LARGE-LOSS	FOCAL	1	ZNF407
TCGA.AA.3850	18	72723195	72728970	3	-4.83245	LARGE-LOSS	FOCAL	1	ZNF407
TCGA.AA.3560	18	72953280	73019182	25	-4.9641	LARGE-LOSS	FOCAL	1	TSHZ1
TCGA.AF.3911	18	73758481	73761241	3	-7.1878	LARGE-LOSS	FOCAL	0	None
TCGA.CM.5348	18	73976450	74006922	11	-1.5955	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3531	18	73976450	74070814	38	-5.8465	LARGE-LOSS	FOCAL	1	ZNF516
TCGA.AA.A010.01A	18	74153164	74561445	4	-2.0348	LARGE-LOSS	FOCAL	3	"C18orf65,ZNF236,ZNF516"
TCGA.G4.6322	18	74784708	74785811	4	-1.5685	LARGE-LOSS	FOCAL	1	MBP
TCGA.AA.3561	18	74849999	74852870	4	-7.638	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3488	18	74882563	74885035	4	-5.5371	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	18	74968055	76756841	7	-1.7846	LARGE-LOSS	FOCAL	2	"GALR1,SALL3"
TCGA.AA.3811	18	76662713	76664862	3	-4.5282	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3869	18	76662713	76664862	3	-8.3099	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2689	18	76662713	76664862	3	-4.8735	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3594	18	76662713	76664862	3	-6.1715	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3893	18	76662713	76669930	3	-4.8751	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6653	18	76716876	76734999	3	-1.479	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A026	18	76734829	76736332	3	-5.6479	LARGE-LOSS	FOCAL	0	None
TCGA.AY.4071	18	76734829	76736332	3	-2.268	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.6599	18	76734829	76736332	3	-1.4579	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A029.01A	18	77105399	77105711	2	-5.8554	LARGE-LOSS	FOCAL	1	ATP9B
TCGA.AG.4021	18	78014319	78015056	3	-5.5466	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	19	110628	287973	6	-1.3823	LARGE-LOSS	FOCAL	2	"OR4F17,PPAP2C"
TCGA.AA.A010.01A	19	325572	367054	8	-1.506	LARGE-LOSS	FOCAL	2	"MIER2,THEG"
TCGA.AA.A017.01A	19	326461	327817	3	-2.7452	LARGE-LOSS	FOCAL	1	MIER2
TCGA.A6.3808.01A	19	571507	629533	29	-1.7314	LARGE-LOSS	FOCAL	3	"BSG,HCN2,POLRMT"
TCGA.AG.A016.01A	19	964199	966555	3	-1.7148	LARGE-LOSS	FOCAL	1	ARID3A
TCGA.AA.A010.01A	19	1206912	1367088	42	-2.2611	LARGE-LOSS	FOCAL	8	"ATP5D,C19orf24,C19orf26,CIRBP,EFNA2,MIDN,MUM1,STK11"
TCGA.AA.A00N.01A	19	1356347	1367088	8	-2.3128	LARGE-LOSS	FOCAL	1	MUM1
TCGA.CK.5914.01A	19	1356347	1367088	8	-1.3471	LARGE-LOSS	FOCAL	1	MUM1
TCGA.AA.A017.01A	19	1362200	1367088	4	-3.3995	LARGE-LOSS	FOCAL	1	MUM1
TCGA.AA.3556	19	1599868	1638918	3	-2.0091	LARGE-LOSS	FOCAL	2	"TCF3,UQCR11"
TCGA.AA.3979	19	1599868	1638918	3	-4.2511	LARGE-LOSS	FOCAL	2	"TCF3,UQCR11"
TCGA.A6.3808.01A	19	1753661	1823564	34	-1.7299	LARGE-LOSS	FOCAL	3	"ATP8B3,ONECUT3,REXO1"
TCGA.AA.A02E.01A	19	1784767	1997296	11	-2.3844	LARGE-LOSS	FOCAL	8	"ABHD17A,ADAT3,ATP8B3,BTBD2,CSNK1G2,KLF16,REXO1,SCAMP4"
TCGA.AA.A010.01A	19	1854407	2046550	41	-1.5937	LARGE-LOSS	FOCAL	7	"ABHD17A,ADAT3,BTBD2,CSNK1G2,KLF16,MKNK2,SCAMP4"
TCGA.AA.A010.01A	19	2114072	2121745	9	-1.4452	LARGE-LOSS	FOCAL	1	AP3D1
TCGA.AA.A010.01A	19	2123284	2151199	10	-2.2041	LARGE-LOSS	FOCAL	1	AP3D1
TCGA.AA.A010.01A	19	2220055	2328335	37	-1.7715	LARGE-LOSS	FOCAL	9	"AMH,C19orf35,DOT1L,JSRP1,LINGO3,LSM7,OAZ1,PLEKHJ1,SF3A2"
TCGA.AA.A010.01A	19	2401902	2736887	33	-1.7491	LARGE-LOSS	FOCAL	7	"DIRAS1,GADD45B,GNG7,LMNB2,SLC39A3,TIMM13,TMPRSS9"
TCGA.AA.A00N.01A	19	2823003	2939252	19	-1.5034	LARGE-LOSS	FOCAL	5	"ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AA.A010.01A	19	3025003	3094603	11	-2.5914	LARGE-LOSS	FOCAL	3	"AES,GNA11,TLE2"
TCGA.AA.A010.01A	19	3192451	3282086	18	-1.4606	LARGE-LOSS	FOCAL	2	"CELF5,NCLN"
TCGA.AA.A010.01A	19	3575479	3611934	14	-1.9435	LARGE-LOSS	FOCAL	4	"CACTIN,GIPC3,HMG20B,TBXA2R"
TCGA.AA.A010.01A	19	3778142	3807123	10	-1.8197	LARGE-LOSS	FOCAL	2	"MATK,ZFR2"
TCGA.AA.A010.01A	19	4510427	4668531	34	-1.3335	LARGE-LOSS	FOCAL	6	"LRG1,MYDGF,PLIN4,PLIN5,SEMA6B,TNFAIP8L1"
TCGA.AA.A00N.01A	19	5595342	5664330	27	-1.4583	LARGE-LOSS	FOCAL	2	"SAFB,SAFB2"
TCGA.AA.A01I.01A	19	5621263	5622494	2	-7.6011	LARGE-LOSS	FOCAL	1	SAFB2
TCGA.AA.A00N.01A	19	5714152	5739320	9	-1.3727	LARGE-LOSS	FOCAL	2	"CATSPERD,LONP1"
TCGA.AA.A010.01A	19	6391863	6418442	7	-1.7978	LARGE-LOSS	FOCAL	2	"GTF2F1,KHSRP"
TCGA.AA.A010.01A	19	6419141	6427066	8	-2.8065	LARGE-LOSS	FOCAL	2	"KHSRP,SLC25A41"
TCGA.AA.A010.01A	19	6429684	6433500	4	-1.9664	LARGE-LOSS	FOCAL	1	SLC25A41
TCGA.AA.A010.01A	19	7030556	7051575	3	-2.709	LARGE-LOSS	FOCAL	3	"MBD3L2,MBD3L4,MBD3L5"
TCGA.A6.3808.01A	19	7504785	7534753	15	-1.9792	LARGE-LOSS	FOCAL	1	ARHGEF18
TCGA.A6.2672	19	7544587	7561995	7	-7.3992	LARGE-LOSS	FOCAL	1	PEX11G
TCGA.AA.A010.01A	19	7568970	7595120	16	-1.9943	LARGE-LOSS	FOCAL	3	"C19orf45,MCOLN1,ZNF358"
TCGA.AA.A004.01A	19	7703570	7704569	3	-3.9189	LARGE-LOSS	FOCAL	1	STXBP2
TCGA.AA.A00O.01A	19	8145895	8146190	2	-4.2327	LARGE-LOSS	FOCAL	1	FBN3
TCGA.AA.A00N.01A	19	8520252	8553523	14	-1.3779	LARGE-LOSS	FOCAL	1	HNRNPM
TCGA.AA.A010.01A	19	8562586	8595043	16	-1.6883	LARGE-LOSS	FOCAL	3	"MYO1F,PRAM1,ZNF414"
TCGA.AA.A00O.01A	19	8660609	8661903	3	-3.7656	LARGE-LOSS	FOCAL	1	ADAMTS10
TCGA.AA.A010.01A	19	8660609	8670473	7	-1.6768	LARGE-LOSS	FOCAL	1	ADAMTS10
TCGA.AA.A00N.01A	19	9361668	9415685	7	-1.7497	LARGE-LOSS	FOCAL	2	"OR7E24,ZNF699"
TCGA.AA.A010.01A	19	9577213	9585913	9	-2.4006	LARGE-LOSS	FOCAL	1	ZNF560
TCGA.AF.3914.01A	19	10200265	10205382	6	-1.5492	LARGE-LOSS	FOCAL	2	"ANGPTL6,C19orf66"
TCGA.AA.A010.01A	19	10385430	10426035	20	-1.72	LARGE-LOSS	FOCAL	5	"FDX1L,ICAM1,ICAM4,ICAM5,ZGLP1"
TCGA.AA.A004.01A	19	10793753	10795452	3	-4.9672	LARGE-LOSS	FOCAL	1	ILF3
TCGA.AA.A010.01A	19	10966896	10979846	5	-2.2152	LARGE-LOSS	FOCAL	1	C19orf38
TCGA.AF.3914.01A	19	11094801	11101788	7	-1.3902	LARGE-LOSS	FOCAL	1	SMARCA4
TCGA.A6.3808.01A	19	11132354	11151957	13	-1.9744	LARGE-LOSS	FOCAL	1	SMARCA4
TCGA.DM.A0XD	19	11163600	11194822	4	-1.5484	LARGE-LOSS	FOCAL	1	SMARCA4
TCGA.AA.A010.01A	19	11356207	11364257	7	-1.6603	LARGE-LOSS	FOCAL	1	DOCK6
TCGA.AF.3914.01A	19	11596460	11598267	4	-1.7425	LARGE-LOSS	FOCAL	1	ZNF653
TCGA.AA.A010.01A	19	13215697	13226771	8	-2.1442	LARGE-LOSS	FOCAL	1	TRMT1
TCGA.AA.A010.01A	19	13862528	13888857	14	-1.7434	LARGE-LOSS	FOCAL	3	"C19orf53,CCDC130,MRI1"
TCGA.AA.A010.01A	19	13939403	14006143	13	-1.4021	LARGE-LOSS	FOCAL	3	"C19orf57,NANOS3,ZSWIM4"
TCGA.AA.A010.01A	19	14080756	14104339	9	-1.5629	LARGE-LOSS	FOCAL	1	RFX1
TCGA.AA.A010.01A	19	14199191	14236885	15	-2.6019	LARGE-LOSS	FOCAL	3	"ASF1B,PRKACA,SAMD1"
TCGA.AA.A010.01A	19	14523798	14627261	27	-1.9638	LARGE-LOSS	FOCAL	5	"DDX39A,DNAJB1,GIPC1,PKN1,PTGER1"
TCGA.AA.A00N.01A	19	14600152	14627261	4	-2.0204	LARGE-LOSS	FOCAL	2	"DNAJB1,GIPC1"
TCGA.AA.A010.01A	19	14769246	14809966	9	-1.3965	LARGE-LOSS	FOCAL	2	"ADGRE3,ZNF333"
TCGA.AA.A010.01A	19	15197840	15234188	17	-1.8169	LARGE-LOSS	FOCAL	3	"ILVBL,OR1I1,SYDE1"
TCGA.AA.A010.01A	19	15295054	15308264	10	-1.5415	LARGE-LOSS	FOCAL	1	NOTCH3
TCGA.AA.A010.01A	19	15533858	15579428	22	-2.5086	LARGE-LOSS	FOCAL	2	"RASAL3,WIZ"
TCGA.AA.A010.01A	19	16664443	16793196	19	-1.9538	LARGE-LOSS	FOCAL	4	"MED26,SLC35E1,SMIM7,TMEM38A"
TCGA.AA.A010.01A	19	17131071	17186118	12	-1.9169	LARGE-LOSS	FOCAL	2	"CPAMD8,HAUS8"
TCGA.AA.3509.01A	19	17263389	17264726	2	-1.939	LARGE-LOSS	FOCAL	1	MYO9B
TCGA.AA.A02F.01A	19	17337465	17339000	3	-6.4992	LARGE-LOSS	FOCAL	1	OCEL1
TCGA.AA.A010.01A	19	17351450	17370669	10	-2.061	LARGE-LOSS	FOCAL	2	"NR2F6,USHBP1"
TCGA.AA.A029.01A	19	17362370	17362681	2	-7.4999	LARGE-LOSS	FOCAL	1	USHBP1
TCGA.AA.A010.01A	19	17405454	17444182	19	-1.3693	LARGE-LOSS	FOCAL	4	"ABHD8,ANO8,DDA1,MRPL34"
TCGA.AF.3914.01A	19	17435484	17444182	9	-1.5226	LARGE-LOSS	FOCAL	1	ANO8
TCGA.EI.6881	19	17688813	17704891	3	-4.2982	LARGE-LOSS	FOCAL	1	COLGALT1
TCGA.AF.3914.01A	19	17831698	17845040	6	-1.4478	LARGE-LOSS	FOCAL	1	MAP1S
TCGA.AA.A00O.01A	19	17875130	17892008	10	-1.5881	LARGE-LOSS	FOCAL	1	FCHO1
TCGA.AA.A00O.01A	19	17893778	17895497	3	-4.9154	LARGE-LOSS	FOCAL	1	FCHO1
TCGA.A6.3808.01A	19	17953085	17954996	5	-2.1638	LARGE-LOSS	FOCAL	1	JAK3
TCGA.AA.A010.01A	19	18047183	18123672	19	-1.4132	LARGE-LOSS	FOCAL	3	"ARRDC2,CCDC124,KCNN1"
TCGA.AA.A010.01A	19	18271238	18288446	14	-2.0152	LARGE-LOSS	FOCAL	2	"IFI30,PIK3R2"
TCGA.AA.A010.01A	19	18375162	18391209	4	-1.6938	LARGE-LOSS	FOCAL	2	"JUND,KIAA1683"
TCGA.AA.A010.01A	19	18701623	18794486	17	-1.6693	LARGE-LOSS	FOCAL	5	"C19orf60,CRLF1,CRTC1,KLHL26,TMEM59L"
TCGA.AA.A010.01A	19	18942987	19011128	30	-2.3635	LARGE-LOSS	FOCAL	4	"CERS1,COPE,GDF1,UPF1"
TCGA.AA.A010.01A	19	19014030	19043686	20	-1.4905	LARGE-LOSS	FOCAL	3	"COPE,DDX49,HOMER3"
TCGA.AA.A010.01A	19	19045084	19049489	3	-2.5789	LARGE-LOSS	FOCAL	1	HOMER3
TCGA.DC.6157	19	19860494	19863630	3	-2.036	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DF	19	20611031	20633221	3	-3.0808	LARGE-LOSS	FOCAL	0	None
TCGA.F5.6810	19	20633221	20708066	5	-5.0606	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DF	19	20663923	20681367	3	-8.9465	LARGE-LOSS	FOCAL	0	None
TCGA.CL.4957	19	21587407	21653949	15	-1.3883	LARGE-LOSS	FOCAL	1	ZNF493
TCGA.F4.6460	19	21648662	21653949	3	-2.0489	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	19	21720535	21948456	6	-1.5074	LARGE-LOSS	FOCAL	2	"ZNF100,ZNF429"
TCGA.AA.3941	19	22103474	22115900	13	-2.7811	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6323	19	22781540	22783219	3	-2.5837	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	19	24373825	28087376	19	-1.65115	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	19	24461654	28256349	21	-2.7966	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3955	19	27998565	28007032	3	-1.7921	LARGE-LOSS	FOCAL	0	None
TCGA.AH.6644	19	28531361	28538988	3	-1.6088	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5662	19	28718177	28720082	3	-1.7159	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	19	30303376	30314514	8	-2.6431	LARGE-LOSS	FOCAL	1	CCNE1
TCGA.AA.3560	19	30538297	30891293	112	-1.5121	LARGE-LOSS	FOCAL	1	ZNF536
TCGA.AA.A00N.01A	19	33072111	33078081	6	-2.0949	LARGE-LOSS	FOCAL	1	PDCD5
TCGA.AG.3909.01A	19	33073018	33096690	11	-1.402	LARGE-LOSS	FOCAL	2	"ANKRD27,PDCD5"
TCGA.AA.A010.01A	19	33663204	33878223	22	-1.8612	LARGE-LOSS	FOCAL	6	"CEBPA,CEBPG,LRP3,PEPD,SLC7A10,WDR88"
TCGA.AA.A010.01A	19	34291303	34687492	9	-1.396	LARGE-LOSS	FOCAL	2	"KCTD15,LSM14A"
TCGA.AA.A00N.01A	19	34900039	34935857	12	-1.4568	LARGE-LOSS	FOCAL	2	"PDCD2L,UBA2"
TCGA.AA.A010.01A	19	34951362	34986551	9	-1.6808	LARGE-LOSS	FOCAL	2	"UBA2,WTIP"
TCGA.AA.A00N.01A	19	35169615	35232465	9	-2.1232	LARGE-LOSS	FOCAL	2	"ZNF181,ZNF302"
TCGA.AA.A010.01A	19	35499975	35514111	11	-1.6501	LARGE-LOSS	FOCAL	1	GRAMD1A
TCGA.AA.A010.01A	19	35516903	35533330	6	-2.3165	LARGE-LOSS	FOCAL	3	"GRAMD1A,HPN,SCN1B"
TCGA.AA.A01Q.01A	19	35523383	35533330	5	-1.3256	LARGE-LOSS	FOCAL	2	"HPN,SCN1B"
TCGA.AA.A010.01A	19	35741180	35775625	13	-2.2591	LARGE-LOSS	FOCAL	3	"HAMP,LSR,USF2"
TCGA.AG.A016.01A	19	35761587	35761916	2	-2.1009	LARGE-LOSS	FOCAL	1	USF2
TCGA.AA.A010.01A	19	36205487	36222772	22	-2.3832	LARGE-LOSS	FOCAL	2	"KMT2B,ZBTB32"
TCGA.AA.A010.01A	19	36223139	36255708	25	-1.6417	LARGE-LOSS	FOCAL	7	"HSPB6,IGFLR1,KMT2B,LIN37,PROSER3,PSENEN,U2AF1L4"
TCGA.AA.A02F.01A	19	36234667	36239556	7	-2.997	LARGE-LOSS	FOCAL	3	"LIN37,PSENEN,U2AF1L4"
TCGA.AF.3914.01A	19	36636641	36642310	4	-1.3575	LARGE-LOSS	FOCAL	2	"CAPNS1,COX7A1"
TCGA.G5.6572	19	36758730	36806474	3	-3.8671	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	19	38795207	38798015	4	-3.3285	LARGE-LOSS	FOCAL	2	"C19orf33,YIF1B"
TCGA.AA.A010.01A	19	39051715	39066553	8	-2.2646	LARGE-LOSS	FOCAL	1	RYR1
TCGA.AF.3914.01A	19	39057491	39061224	3	-1.5897	LARGE-LOSS	FOCAL	1	RYR1
TCGA.AA.A010.01A	19	39068541	39083907	9	-1.3231	LARGE-LOSS	FOCAL	2	"MAP4K1,RYR1"
TCGA.A6.3808.01A	19	39205078	39227758	19	-2.0419	LARGE-LOSS	FOCAL	2	"ACTN4,CAPN12"
TCGA.AA.A010.01A	19	39219594	39234559	15	-1.7976	LARGE-LOSS	FOCAL	2	"ACTN4,CAPN12"
TCGA.AA.A010.01A	19	39321683	39337905	10	-2.0507	LARGE-LOSS	FOCAL	2	"ECH1,HNRNPL"
TCGA.AA.A010.01A	19	39805110	39826534	7	-2.8244	LARGE-LOSS	FOCAL	2	"GMFG,LRFN1"
TCGA.AA.A010.01A	19	39973460	40009160	15	-1.4069	LARGE-LOSS	FOCAL	3	"DLL3,SELV,TIMM50"
TCGA.AF.3914.01A	19	39991186	39998797	6	-1.4405	LARGE-LOSS	FOCAL	1	DLL3
TCGA.AF.3914.01A	19	40317887	40320965	4	-2.0166	LARGE-LOSS	FOCAL	1	DYRK1B
TCGA.AA.A00N.01A	19	40325119	40329638	4	-1.672	LARGE-LOSS	FOCAL	1	FBL
TCGA.A6.3808.01A	19	40354064	40408223	22	-1.4293	LARGE-LOSS	FOCAL	1	FCGBP
TCGA.AA.A010.01A	19	40697898	40730343	14	-2.1485	LARGE-LOSS	FOCAL	3	"CNTD2,MAP3K10,TTC9B"
TCGA.AA.A010.01A	19	40947347	41135253	77	-1.5278	LARGE-LOSS	FOCAL	5	"BLVRB,LTBP4,SERTAD3,SHKBP1,SPTBN4"
TCGA.AA.A00N.01A	19	41774101	41779827	3	-1.576	LARGE-LOSS	FOCAL	1	HNRNPUL1
TCGA.AA.A010.01A	19	42485626	42510745	9	-1.3769	LARGE-LOSS	FOCAL	2	"ATP1A3,GRIK5"
TCGA.AA.A010.01A	19	42788809	42804072	15	-2.0784	LARGE-LOSS	FOCAL	2	"CIC,PAFAH1B3"
TCGA.AA.A02F.01A	19	43258400	43268324	6	-2.0671	LARGE-LOSS	FOCAL	1	PSG8
TCGA.AA.A02F.01A	19	43371813	43530445	23	-2.6435	LARGE-LOSS	FOCAL	4	"PSG1,PSG11,PSG6,PSG7"
TCGA.AA.3877	19	43447467	43465170	5	-3.2196	LARGE-LOSS	FOCAL	0	None
TCGA.AF.A56L	19	43556842	43591769	5	-2.0924	LARGE-LOSS	FOCAL	1	PSG2
TCGA.AG.A01Y	19	43556842	43591769	5	-3.3859	LARGE-LOSS	FOCAL	1	PSG2
TCGA.DM.A1HA	19	43647977	43691317	7	-4.7156	LARGE-LOSS	FOCAL	1	PSG5
TCGA.AG.A01Y	19	43766658	43846237	21	-3.8542	LARGE-LOSS	FOCAL	1	PSG9
TCGA.AA.A010.01A	19	43860093	43866221	5	-1.3533	LARGE-LOSS	FOCAL	1	CD177
TCGA.AA.A010.01A	19	44038534	44065014	12	-1.9482	LARGE-LOSS	FOCAL	2	"XRCC1,ZNF575"
TCGA.AA.A010.01A	19	44131307	44169441	8	-1.6877	LARGE-LOSS	FOCAL	2	"CADM4,PLAUR"
TCGA.AF.3914.01A	19	45314455	45317821	5	-1.5528	LARGE-LOSS	FOCAL	1	BCAM
TCGA.AF.3914.01A	19	45391318	45418136	11	-1.6201	LARGE-LOSS	FOCAL	4	"APOC1,APOE,PVRL2,TOMM40"
TCGA.AA.A010.01A	19	45477649	45528827	17	-1.4222	LARGE-LOSS	FOCAL	2	"CLPTM1,RELB"
TCGA.AA.A010.01A	19	45727987	45781722	12	-1.3703	LARGE-LOSS	FOCAL	2	"EXOC3L2,MARK4"
TCGA.AA.A010.01A	19	46274562	46313824	19	-1.4472	LARGE-LOSS	FOCAL	3	"DMPK,DMWD,RSPH6A"
TCGA.AG.3909.01A	19	46375284	46387967	4	-1.3772	LARGE-LOSS	FOCAL	2	"FOXA3,IRF2BP1"
TCGA.AA.A010.01A	19	46443072	46476489	4	-1.9469	LARGE-LOSS	FOCAL	1	NOVA2
TCGA.DY.A1DF	19	47103427	47109150	3	-2.5526	LARGE-LOSS	FOCAL	2	"CALM3,PPP5D1"
TCGA.G4.6303	19	48564215	48566036	3	-1.6655	LARGE-LOSS	FOCAL	1	PLA2G4C
TCGA.AA.A010.01A	19	48878822	49016330	52	-1.6439	LARGE-LOSS	FOCAL	7	"CYTH2,GRIN2D,GRWD1,KCNJ14,KDELR1,LMTK3,SYNGR4"
TCGA.QG.A5Z1	19	48880399	48893674	3	-4.2471	LARGE-LOSS	FOCAL	1	KDELR1
TCGA.AA.A010.01A	19	49227552	49230572	4	-2.6412	LARGE-LOSS	FOCAL	1	RASIP1
TCGA.AA.A010.01A	19	49232167	49248855	12	-1.7481	LARGE-LOSS	FOCAL	2	"IZUMO1,RASIP1"
TCGA.AA.A01D.01A	19	49468773	49469793	3	-6.164	LARGE-LOSS	FOCAL	1	FTL
TCGA.AG.A01J.01A	19	49477428	49477830	2	-6.744	LARGE-LOSS	FOCAL	1	GYS1
TCGA.AA.A010.01A	19	49535261	49601620	13	-2.1406	LARGE-LOSS	FOCAL	8	"CGB1,CGB2,CGB5,CGB7,CGB8,KCNA7,NTF4,SNRNP70"
TCGA.AA.A004.01A	19	49961696	49962908	3	-5.1035	LARGE-LOSS	FOCAL	1	ALDH16A1
TCGA.AA.A02E.01A	19	50086449	50087098	3	-3.8967	LARGE-LOSS	FOCAL	1	PRRG2
TCGA.AG.A00H.01A	19	50086449	50087098	3	-5.3488	LARGE-LOSS	FOCAL	1	PRRG2
TCGA.AA.A010.01A	19	50148253	50172051	18	-2.2211	LARGE-LOSS	FOCAL	3	"BCL2L12,IRF3,SCAF1"
TCGA.AA.A02E.01A	19	50169054	50183705	7	-1.6574	LARGE-LOSS	FOCAL	3	"BCL2L12,IRF3,PRMT1"
TCGA.AA.A02E.01A	19	50185140	50185388	2	-6.025	LARGE-LOSS	FOCAL	1	PRMT1
TCGA.AG.A025.01A	19	50185140	50185388	2	-7.7376	LARGE-LOSS	FOCAL	1	PRMT1
TCGA.AA.A010.01A	19	50357632	50369589	11	-1.455	LARGE-LOSS	FOCAL	2	"PNKP,PTOV1"
TCGA.AF.3914.01A	19	50360181	50369589	10	-1.3895	LARGE-LOSS	FOCAL	2	"PNKP,PTOV1"
TCGA.AA.A010.01A	19	50804879	50831440	9	-1.4407	LARGE-LOSS	FOCAL	2	"KCNC3,MYH14"
TCGA.AG.A01W.01A	19	50995518	50999302	3	-1.7552	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1DA	19	51103382	51113244	3	-6.487	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D9	19	51109792	51135456	3	-4.233	LARGE-LOSS	FOCAL	1	SYT3
TCGA.AA.A010.01A	19	51175227	51205686	11	-2.498	LARGE-LOSS	FOCAL	1	SHANK1
TCGA.AA.A010.01A	19	51206757	51227120	12	-1.7171	LARGE-LOSS	FOCAL	2	"CLEC11A,SHANK1"
TCGA.AA.A024.01A	19	51207324	51207662	2	-3.3342	LARGE-LOSS	FOCAL	1	SHANK1
TCGA.AA.3858	19	51708391	51712208	3	-1.4325	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3867	19	51708391	51712208	3	-1.379	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	19	52084593	52115436	6	-1.54	LARGE-LOSS	FOCAL	2	"SIGLEC5,ZNF175"
TCGA.AA.A010.01A	19	52785002	52824830	9	-2.0142	LARGE-LOSS	FOCAL	2	"ZNF480,ZNF766"
TCGA.AM.5820	19	53750484	53754735	3	-1.6387	LARGE-LOSS	FOCAL	1	ZNF677
TCGA.AA.A029.01A	19	54224282	54234216	6	-4.5374	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	19	54396531	54418567	11	-2.3348	LARGE-LOSS	FOCAL	2	"CACNG7,PRKCG"
TCGA.AA.A010.01A	19	54444696	54502871	9	-1.3714	LARGE-LOSS	FOCAL	3	"CACNG6,CACNG7,CACNG8"
TCGA.A6.3808.01A	19	54629870	54647695	8	-2.5728	LARGE-LOSS	FOCAL	2	"CNOT3,PRPF31"
TCGA.AA.A017.01A	19	54665801	54667404	4	-3.0884	LARGE-LOSS	FOCAL	1	TMC4
TCGA.AA.3509.01A	19	54726138	54726547	2	-3.23	LARGE-LOSS	FOCAL	1	LILRB3
TCGA.AA.A01D.01A	19	54875852	54876303	2	-4.4715	LARGE-LOSS	FOCAL	1	LAIR1
TCGA.AA.A010.01A	19	54962450	54976257	16	-2.0788	LARGE-LOSS	FOCAL	3	"CDC42EP5,LENG8,LENG9"
TCGA.AG.4009.01A	19	55246668	55263897	6	-2.3281	LARGE-LOSS	FOCAL	2	"KIR2DL3,KIR3DL3"
TCGA.AG.A011.01A	19	55320215	55324529	2	-2.1373	LARGE-LOSS	FOCAL	1	KIR2DL4
TCGA.4T.AA8H	19	55347962	55363895	4	-1.8594	LARGE-LOSS	FOCAL	2	"KIR2DS4,KIR3DL2"
TCGA.NH.A50U	19	55347962	55363895	4	-6.244	LARGE-LOSS	FOCAL	2	"KIR2DS4,KIR3DL2"
TCGA.AA.A00N.01A	19	55417990	55529960	31	-1.4546	LARGE-LOSS	FOCAL	4	"GP6,NCR1,NLRP2,NLRP7"
TCGA.AA.A010.01A	19	56089265	56135790	7	-1.7302	LARGE-LOSS	FOCAL	5	"FIZ1,ZNF524,ZNF579,ZNF784,ZNF865"
TCGA.AG.4009.01A	19	56155910	56163746	4	-1.352	LARGE-LOSS	FOCAL	2	"CCDC106,ZNF581"
TCGA.A6.3808.01A	19	56223114	56226372	3	-4.217	LARGE-LOSS	FOCAL	1	NLRP9
TCGA.A6.3808.01A	19	56228045	56296941	9	-1.3699	LARGE-LOSS	FOCAL	4	"NLRP11,NLRP9,RFPL4A,RFPL4AL1"
TCGA.A6.3808.01A	19	56515045	56539641	8	-1.8392	LARGE-LOSS	FOCAL	1	NLRP5
TCGA.AA.A00N.01A	19	57022856	57089681	17	-1.6865	LARGE-LOSS	FOCAL	3	"ZFP28,ZNF470,ZNF471"
TCGA.AA.A010.01A	19	57027594	57065801	12	-2.0956	LARGE-LOSS	FOCAL	2	"ZFP28,ZNF471"
TCGA.SS.A7HO	19	57204257	57211510	4	-7.0686	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3673	19	57474119	57479481	5	-4.7053	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	19	58002784	58152072	29	-1.3624	LARGE-LOSS	FOCAL	9	"ZIK1,ZNF134,ZNF211,ZNF416,ZNF419,ZNF530,ZNF549,ZNF550,ZNF773"
TCGA.A6.6649	19	58572958	58575799	3	-1.7469	LARGE-LOSS	FOCAL	1	ZNF135
TCGA.AG.A025.01A	19	58578798	58579522	2	-6.3423	LARGE-LOSS	FOCAL	1	ZNF135
TCGA.AA.A010.01A	19	58899455	58928127	7	-2.181	LARGE-LOSS	FOCAL	3	"RNF225,RPS5,ZNF584"
TCGA.A6.3808.01A	19	59056754	59068016	8	-2.8217	LARGE-LOSS	FOCAL	3	"CHMP2A,TRIM28,UBE2M"
TCGA.AA.A010.01A	19	59056754	59068016	8	-3.2319	LARGE-LOSS	FOCAL	3	"CHMP2A,TRIM28,UBE2M"
TCGA.AA.A010.01A	19	59069589	59082320	6	-2.0742	LARGE-LOSS	FOCAL	2	"MZF1,UBE2M"
TCGA.A6.2672	20	69407	134642	16	-1.9258	LARGE-LOSS	FOCAL	2	"DEFB125,DEFB126"
TCGA.A6.5665	20	69407	134642	16	-2.5053	LARGE-LOSS	FOCAL	2	"DEFB125,DEFB126"
TCGA.AA.A010.01A	20	251777	376821	21	-1.3789	LARGE-LOSS	FOCAL	5	"C20orf96,NRSN2,SOX12,TRIB3,ZCCHC3"
TCGA.AA.A010.01A	20	389337	397833	4	-2.676	LARGE-LOSS	FOCAL	1	RBCK1
TCGA.CK.5914.01A	20	1164342	1214682	7	-1.3768	LARGE-LOSS	FOCAL	3	"C20orf202,RAD21L1,TMEM74B"
TCGA.AA.A00N.01A	20	1209046	1234886	13	-1.5229	LARGE-LOSS	FOCAL	1	RAD21L1
TCGA.AG.A01J.01A	20	1285495	1285871	2	-6.6827	LARGE-LOSS	FOCAL	1	SNPH
TCGA.AG.A02G.01A	20	1285495	1293944	5	-5.0372	LARGE-LOSS	FOCAL	2	"SDCBP2,SNPH"
TCGA.AA.A017.01A	20	1433117	1436262	5	-2.3577	LARGE-LOSS	FOCAL	1	NSFL1C
TCGA.AA.A02K.01A	20	1579424	1591957	4	-1.4714	LARGE-LOSS	FOCAL	1	SIRPB1
TCGA.CM.6679	20	1916731	1917289	3	-2.24135	LARGE-LOSS	FOCAL	1	SIRPA
TCGA.AA.A010.01A	20	2686175	2729158	5	-1.5953	LARGE-LOSS	FOCAL	1	EBF4
TCGA.AA.A010.01A	20	2816067	2846811	17	-1.6283	LARGE-LOSS	FOCAL	3	"PCED1A,PTPRA,VPS16"
TCGA.AA.A01K.01A	20	3683832	3684432	2	-7.1651	LARGE-LOSS	FOCAL	1	SIGLEC1
TCGA.AA.A02E.01A	20	3683832	3684432	2	-4.4141	LARGE-LOSS	FOCAL	1	SIGLEC1
TCGA.AA.A010.01A	20	3719242	3802723	36	-1.853	LARGE-LOSS	FOCAL	6	"AP5S1,C20orf27,CDC25B,CENPB,HSPA12B,SPEF1"
TCGA.A6.2674	20	3829666	3844294	7	-1.4399	LARGE-LOSS	FOCAL	1	MAVS
TCGA.DC.6683	20	4037626	4038371	3	-6.7162	LARGE-LOSS	FOCAL	0	None
TCGA.AF.2692	20	4054481	4055166	3	-4.2544	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2675	20	4055106	4057550	3	-1.5754	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	4228507	4681565	4	-1.3979	LARGE-LOSS	FOCAL	2	"ADRA1D,PRNP"
TCGA.AA.3982	20	4535942	4540104	3	-3.5404	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	20	4538242	4541975	4	-1.6422	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	20	5086792	5099262	6	-1.5523	LARGE-LOSS	FOCAL	2	"PCNA,TMEM230"
TCGA.CK.5914.01A	20	5095867	5099262	3	-2.1659	LARGE-LOSS	FOCAL	1	PCNA
TCGA.5M.AAT4	20	5280743	5284379	3	-3.8201	LARGE-LOSS	FOCAL	1	PROKR2
TCGA.AA.A010.01A	20	5573914	5584933	3	-2.0379	LARGE-LOSS	FOCAL	1	GPCPD1
TCGA.AA.A02W.01A	20	5923053	5925413	4	-3.2367	LARGE-LOSS	FOCAL	1	TRMT6
TCGA.AA.A00N.01A	20	5974890	6031403	11	-1.5601	LARGE-LOSS	FOCAL	3	"CRLS1,LRRN4,MCM8"
TCGA.AA.3941	20	6545696	6555902	3	-4.2486	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	20	6555460	6557906	3	-3.27545	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6931	20	7700107	7700581	3	-3.8912	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	20	8626700	8639138	6	-1.8492	LARGE-LOSS	FOCAL	1	PLCB1
TCGA.CK.5914.01A	20	9353621	9371124	6	-1.4495	LARGE-LOSS	FOCAL	1	PLCB4
TCGA.AA.A00N.01A	20	9624754	10036100	10	-1.5171	LARGE-LOSS	FOCAL	2	"ANKEF1,PAK7"
TCGA.AA.3941	20	11072080	11072784	3	-2.1375	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	20	11464226	11468340	9	-2.3043	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	20	11467522	11468340	3	-4.3229	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3574	20	12287670	12294071	4	-7.508	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	20	12505922	12512323	4	-1.5678	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	20	12649065	12651633	6	-1.8136	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	20	12724029	12725016	3	-2.1987	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3517	20	14293642	14646698	108	-1.6924	LARGE-LOSS	FOCAL	2	"FLRT3,MACROD2"
TCGA.AA.3982	20	14492514	14495110	3	-1.8181	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.CM.6169	20	14507609	14524740	14	-3.315	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.5666	20	14579604	14940686	127	-1.7004	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AG.A026	20	14605037	15402079	321	-5.6922	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.3807	20	14613018	15041360	144	-1.492	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3867	20	14622994	14646698	10	-4.1351	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3955	20	14622994	15071191	168	-2.1656	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DM.A1DB	20	14658363	14983867	110	-3.1668	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.6653	20	14667414	15106977	173	-2.2787	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AG.3898	20	14668242	14705887	14	-1.8147	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3848	20	14668242	14786005	36	-4.5407	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DM.A28F	20	14671074	14686296	5	-1.7146	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.D5.6535	20	14718195	14878295	52	-2.3262	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3529	20	14720537	14921538	75	-1.5549	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.2677	20	14720537	15098083	139	-2.1197	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AH.6643	20	14720537	15211512	199	-1.6724	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3947	20	14729868	14945838	79	-1.4713	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AF.3913	20	14729868	15044366	113	-1.9701	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.CM.6172	20	14758110	14965822	78	-2.0895	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.EI.6883	20	14758472	14940686	70	-2.3769	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.G4.6626	20	14768902	15230950	202	-1.9285	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DM.A28A	20	14781683	15111137	143	-2.9075	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3848	20	14794360	15045411	98	-1.6949	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.4105	20	14816381	14945838	56	-1.713	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.A022	20	14830595	15044092	84	-2.2119	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.2683	20	14831624	15053279	90	-2.3567	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AG.3726	20	14844048	15071191	100	-2.4567	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.F5.6864	20	14850724	14986154	50	-1.5693	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3966	20	14862234	14923389	37	-1.5914	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3660	20	14862971	15007353	49	-1.8113	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.EI.6512	20	14865155	15122604	126	-2.197	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DC.6154	20	14869902	14922359	30	-2.7555	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3519	20	14878295	14995342	39	-3.0691	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DY.A1DD	20	14887229	15119096	110	-4.469	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.2681	20	14891786	14906525	11	-1.6037	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.T9.A92H	20	14891786	15026744	51	-3.2918	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AG.3602	20	14894919	15007729	39	-2.3954	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3860	20	14902521	14995342	30	-2.006	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AG.3592	20	14904123	14923389	17	-2.25	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DM.A1D8	20	14904169	14923389	16	-1.5775	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3971	20	14907596	14986154	25	-1.3356	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.2681	20	14912222	14923389	9	-1.6876	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AY.A8YK	20	14915050	14960099	14	-1.9779	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.CL.5917	20	14921233	15287315	156	-2.5971	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AD.6965	20	14940686	15159549	110	-1.3751	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.5666	20	14941454	14945838	3	-9.7743	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AG.3898	20	14941454	15071191	56	-2.0477	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.5666	20	14948624	15063213	43	-1.7725	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3994	20	14983867	15044924	30	-1.5644	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AD.6888	20	14983867	15063213	39	-1.9374	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AZ.4308	20	14995342	15043622	25	-1.9999	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.SS.A7HO	20	15007353	15071191	44	-5.8317	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DY.A1H8	20	15007353	15388359	177	-4.7951	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AF.2689	20	15014096	15045411	24	-2.2308	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3845	20	15037897	15085364	37	-1.5593	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.3807	20	15041577	15062812	15	-3.525	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AF.3913	20	15044924	15052513	4	-7.2225	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3848	20	15052513	15237871	103	-3.3552	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AF.3913	20	15053066	15143805	62	-1.8928	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.A6.5666	20	15063913	15139546	54	-4.249	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.F5.6864	20	15078723	15193073	62	-1.4942	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3529	20	15085204	15125971	32	-1.4824	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AF.2689	20	15099513	15624155	287	-2.2164	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.D5.5538	20	15118512	15139546	21	-1.6722	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.F4.6808	20	15137153	15490759	161	-2.3857	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DM.A1DB	20	15157913	15239468	37	-3.0158	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.DM.A0X9	20	15289700	15337954	18	-1.8483	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AG.A026	20	15404289	15477703	51	-1.3811	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AF.A56N	20	15521363	15792860	169	-3.3002	LARGE-LOSS	FOCAL	1	MACROD2
TCGA.AA.3941	20	17071680	17074676	6	-1.3333	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3581	20	17746154	17749817	3	-6.8844	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00O.01A	20	18470379	18470980	2	-4.3249	LARGE-LOSS	FOCAL	1	RBBP9
TCGA.AG.3574	20	19917441	19919543	3	-7.7738	LARGE-LOSS	FOCAL	1	RIN2
TCGA.AA.A00O.01A	20	20036559	20037260	2	-3.8866	LARGE-LOSS	FOCAL	2	"CFAP61,CRNKL1"
TCGA.CK.5914.01A	20	20269236	20392619	9	-1.3637	LARGE-LOSS	FOCAL	3	"CFAP61,INSM1,RALGAPA2"
TCGA.AA.A00N.01A	20	21362576	21369846	3	-1.6938	LARGE-LOSS	FOCAL	1	XRN2
TCGA.RU.A8FL	20	22528834	22532011	3	-6.8763	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A50T	20	23170730	23174393	4	-1.3418	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DF	20	24023072	24023600	3	-6.7679	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A28A	20	24183802	24187783	4	-1.4781	LARGE-LOSS	FOCAL	0	None
TCGA.A6.6780	20	24508420	24515210	3	-2.723	LARGE-LOSS	FOCAL	1	SYNDIG1
TCGA.AA.A017.01A	20	25195454	25196269	2	-4.2309	LARGE-LOSS	FOCAL	1	ENTPD6
TCGA.AA.A010.01A	20	25206088	25251982	5	-1.376	LARGE-LOSS	FOCAL	2	"ENTPD6,PYGB"
TCGA.A6.3808.01A	20	25829245	29632560	9	-2.9007	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	20	25829245	29633815	11	-1.4849	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	30946536	30959872	6	-2.3878	LARGE-LOSS	FOCAL	1	ASXL1
TCGA.AA.A01D.01A	20	31017096	31017664	2	-5.4789	LARGE-LOSS	FOCAL	1	ASXL1
TCGA.AA.A010.01A	20	31052702	31196063	11	-1.4037	LARGE-LOSS	FOCAL	1	NOL4L
TCGA.AA.A00N.01A	20	31967226	31984518	7	-1.5555	LARGE-LOSS	FOCAL	1	CDK5RAP1
TCGA.AA.A010.01A	20	32245563	32336677	26	-1.4594	LARGE-LOSS	FOCAL	6	"ACTL10,C20orf144,E2F1,NECAB3,PXMP4,ZNF341"
TCGA.AA.A02F.01A	20	32376619	32377263	2	-5.0004	LARGE-LOSS	FOCAL	1	ZNF341
TCGA.AA.A00N.01A	20	33049870	33068823	8	-1.6932	LARGE-LOSS	FOCAL	1	ITCH
TCGA.AA.A010.01A	20	35381153	35395117	7	-1.9148	LARGE-LOSS	FOCAL	1	DSN1
TCGA.AA.A00N.01A	20	35381153	35399748	10	-1.7618	LARGE-LOSS	FOCAL	1	DSN1
TCGA.AA.A010.01A	20	35731049	35740677	4	-1.7657	LARGE-LOSS	FOCAL	1	MROH8
TCGA.AA.A010.01A	20	35742346	35776137	11	-2.5704	LARGE-LOSS	FOCAL	1	MROH8
TCGA.AA.A010.01A	20	35783419	35800267	6	-1.8707	LARGE-LOSS	FOCAL	1	MROH8
TCGA.AA.3850	20	38257288	38258947	4	-2.45745	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	39974397	39978376	5	-1.5044	LARGE-LOSS	FOCAL	1	LPIN3
TCGA.AA.A010.01A	20	39980409	39993623	12	-2.2477	LARGE-LOSS	FOCAL	2	"EMILIN3,LPIN3"
TCGA.DM.A0XF	20	41097688	41103061	5	-1.3948	LARGE-LOSS	FOCAL	1	PTPRT
TCGA.AA.A00N.01A	20	42223287	42249480	8	-1.7839	LARGE-LOSS	FOCAL	1	IFT52
TCGA.AA.A00N.01A	20	43530135	43541250	7	-1.6742	LARGE-LOSS	FOCAL	2	"PABPC1L,YWHAB"
TCGA.AG.4021	20	43919703	43928697	3	-1.7316	LARGE-LOSS	FOCAL	1	MATN4
TCGA.AA.A00N.01A	20	44259491	44279089	4	-1.9156	LARGE-LOSS	FOCAL	3	"WFDC10A,WFDC11,WFDC9"
TCGA.AA.A010.01A	20	44693617	44707943	5	-1.5802	LARGE-LOSS	FOCAL	1	NCOA5
TCGA.AA.A010.01A	20	44803454	44815218	3	-1.5123	LARGE-LOSS	FOCAL	1	CDH22
TCGA.AA.A01I.01A	20	45865021	45878009	4	-3.2532	LARGE-LOSS	FOCAL	1	ZMYND8
TCGA.AG.4015	20	47370528	47376184	3	-2.099	LARGE-LOSS	FOCAL	1	PREX1
TCGA.AA.A010.01A	20	47444132	47570052	7	-1.4116	LARGE-LOSS	FOCAL	2	"ARFGEF2,PREX1"
TCGA.AA.A02F.01A	20	47837942	47841404	4	-3.7851	LARGE-LOSS	FOCAL	1	DDX27
TCGA.AA.A00N.01A	20	47882620	47896798	4	-1.5388	LARGE-LOSS	FOCAL	1	ZNFX1
TCGA.AA.A010.01A	20	48747342	48807523	5	-1.4994	LARGE-LOSS	FOCAL	3	"CEBPB,TMEM189,TMEM189-UBE2V1"
TCGA.AG.A01N.01A	20	49227632	49231122	2	-3.5465	LARGE-LOSS	FOCAL	1	FAM65C
TCGA.AA.A010.01A	20	49518513	49565086	8	-1.9416	LARGE-LOSS	FOCAL	2	"ADNP,DPM1"
TCGA.DM.A1HA	20	49909372	49919473	6	-1.4646	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A026	20	52647807	52653828	3	-3.3596	LARGE-LOSS	FOCAL	1	BCAS1
TCGA.DM.A1HB	20	52647807	52657716	5	-1.4547	LARGE-LOSS	FOCAL	1	BCAS1
TCGA.AZ.6605	20	52807220	52808061	3	-3.4633	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6965	20	52807959	52808778	3	-4.0431	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3548	20	55577629	55578759	3	-3.7755	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	55906838	55910803	7	-1.697	LARGE-LOSS	FOCAL	1	SPO11
TCGA.AA.A00N.01A	20	55906838	55941810	17	-2.244	LARGE-LOSS	FOCAL	3	"MTRNR2L3,RAE1,SPO11"
TCGA.AA.A010.01A	20	55913285	55982549	18	-2.4629	LARGE-LOSS	FOCAL	4	"MTRNR2L3,RAE1,RBM38,SPO11"
TCGA.AA.A00N.01A	20	55943714	55953046	4	-1.6343	LARGE-LOSS	FOCAL	1	RAE1
TCGA.AA.A010.01A	20	56793504	56826766	16	-1.9205	LARGE-LOSS	FOCAL	1	ANKRD60
TCGA.AA.A00N.01A	20	56796342	56815487	10	-1.8306	LARGE-LOSS	FOCAL	1	ANKRD60
TCGA.AA.A00N.01A	20	57227012	57266763	10	-1.9863	LARGE-LOSS	FOCAL	2	"NPEPL1,STX16"
TCGA.AA.A010.01A	20	57234598	57287488	17	-1.8882	LARGE-LOSS	FOCAL	2	"NPEPL1,STX16"
TCGA.AA.A010.01A	20	57466770	57572641	26	-2.3431	LARGE-LOSS	FOCAL	3	"CTSZ,GNAS,NELFCD"
TCGA.AG.3909.01A	20	57605309	57613471	5	-1.333	LARGE-LOSS	FOCAL	2	"ATP5E,SLMO2"
TCGA.AA.A010.01A	20	58488965	58544009	17	-1.5707	LARGE-LOSS	FOCAL	4	"CDH26,FAM217B,PPP1R3D,SYCP2"
TCGA.AA.3850	20	58495096	58500452	3	-4.85895	LARGE-LOSS	FOCAL	1	SYCP2
TCGA.AA.3941	20	58499627	58502647	3	-4.104	LARGE-LOSS	FOCAL	1	SYCP2
TCGA.NH.A50T	20	59861740	59868405	3	-3.3643	LARGE-LOSS	FOCAL	1	CDH4
TCGA.AD.A5EK	20	60159517	60219482	24	-1.3556	LARGE-LOSS	FOCAL	1	CDH4
TCGA.AA.A010.01A	20	60697711	60715834	17	-2.8382	LARGE-LOSS	FOCAL	2	"LSM14B,PSMA7"
TCGA.AA.A02F.01A	20	60714120	60715834	3	-4.6338	LARGE-LOSS	FOCAL	1	PSMA7
TCGA.AA.A010.01A	20	60718215	60734879	4	-1.758	LARGE-LOSS	FOCAL	2	"PSMA7,SS18L1"
TCGA.AG.3575	20	60736862	60741596	4	-1.8645	LARGE-LOSS	FOCAL	1	SS18L1
TCGA.AA.A010.01A	20	60768430	60831158	10	-1.6187	LARGE-LOSS	FOCAL	3	"HRH3,MTG2,OSBPL2"
TCGA.A6.3808.01A	20	60879467	60921509	46	-2.3593	LARGE-LOSS	FOCAL	2	"ADRM1,LAMA5"
TCGA.AA.A010.01A	20	60937409	60994574	23	-1.9057	LARGE-LOSS	FOCAL	4	"CABLES2,LAMA5,RBBP8NL,RPS21"
TCGA.AA.A010.01A	20	61428413	61442767	10	-2.0665	LARGE-LOSS	FOCAL	2	"MRGBP,OGFR"
TCGA.AA.A017.01A	20	61452779	61468435	6	-2.4624	LARGE-LOSS	FOCAL	1	COL9A3
TCGA.AA.A010.01A	20	61473275	61491430	6	-2.6864	LARGE-LOSS	FOCAL	2	"DPH3P1,TCFL5"
TCGA.AA.A00N.01A	20	61473275	61576039	26	-1.4192	LARGE-LOSS	FOCAL	4	"DIDO1,DPH3P1,GID8,TCFL5"
TCGA.AA.A010.01A	20	61572808	61576039	4	-2.4331	LARGE-LOSS	FOCAL	1	GID8
TCGA.AA.A010.01A	20	61827972	61846840	5	-2.4693	LARGE-LOSS	FOCAL	1	YTHDF1
TCGA.AA.A010.01A	20	62119614	62128924	7	-2.6665	LARGE-LOSS	FOCAL	1	EEF1A2
TCGA.AA.A010.01A	20	62234270	62298768	15	-1.6641	LARGE-LOSS	FOCAL	3	"GMEB2,RTEL1,STMN3"
TCGA.A6.3808.01A	20	62321410	62337947	18	-2.8575	LARGE-LOSS	FOCAL	3	"ARFRP1,RTEL1,TNFRSF6B"
TCGA.AA.A010.01A	20	62332510	62521179	35	-1.9772	LARGE-LOSS	FOCAL	7	"ABHD16B,ARFRP1,LIME1,SLC2A4RG,TPD52L2,ZBTB46,ZGPAT"
TCGA.AA.A010.01A	20	62591233	62630355	22	-2.3904	LARGE-LOSS	FOCAL	3	"PRPF6,SAMD10,ZNF512B"
TCGA.AA.A010.01A	20	62630939	62694605	19	-1.3945	LARGE-LOSS	FOCAL	3	"PRPF6,SOX18,TCEA2"
TCGA.AD.A5EK	20	62676008	62912462	66	-1.4526	LARGE-LOSS	FOCAL	8	"LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,RGS19,SOX18,TCEA2"
TCGA.AA.A010.01A	20	62697769	62729118	14	-2.2945	LARGE-LOSS	FOCAL	4	"LKAAEAR1,OPRL1,RGS19,TCEA2"
TCGA.AA.A00N.01A	20	62891299	62904524	5	-2.0491	LARGE-LOSS	FOCAL	1	PCMTD2
TCGA.AA.A010.01A	20	62891299	62904524	5	-2.0646	LARGE-LOSS	FOCAL	1	PCMTD2
TCGA.AZ.4684.01A	21	10862558	15013644	27	-1.4107	LARGE-LOSS	FOCAL	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.A6.5665	21	10971565	14603576	5	-4.5447	LARGE-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AA.3848	21	10971565	14688348	12	-3.8466	LARGE-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.DY.A1DD	21	10971565	14769539	18	-2.3755	LARGE-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.DC.4745	21	14676906	14769539	8	-3.9925	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1D0	21	14760840	14769539	3	-1.639	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5665	21	14832309	15203800	8	-6.0342	LARGE-LOSS	FOCAL	1	POTED
TCGA.AA.3509.01A	21	14982868	15013644	3	-4.2431	LARGE-LOSS	FOCAL	1	POTED
TCGA.A6.3810.01A	21	15011789	15013644	2	-1.6597	LARGE-LOSS	FOCAL	1	POTED
TCGA.AG.3881	21	17444884	18402123	336	-2.33	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3673	21	17693664	17698323	3	-2.4591	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3675	21	17693664	17698323	3	-1.5463	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A0XD	21	17903972	17920137	4	-1.4787	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3555	21	19636305	19639194	3	-1.7861	LARGE-LOSS	FOCAL	1	CHODL
TCGA.QG.A5YV	21	19952099	22045293	780	-1.5125	LARGE-LOSS	FOCAL	0	None
TCGA.F5.6810	21	21310634	21335583	3	-7.1194	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01Z	21	21637718	21638849	3	-1.6396	LARGE-LOSS	FOCAL	0	None
TCGA.DC.6157	21	21768733	21769473	3	-1.4935	LARGE-LOSS	FOCAL	0	None
TCGA.AM.5820	21	23271670	23284266	3	-4.3344	LARGE-LOSS	FOCAL	0	None
TCGA.AM.5821	21	23271670	23284266	3	-4.2078	LARGE-LOSS	FOCAL	0	None
TCGA.DC.4745	21	23332625	23335782	3	-4.7013	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2684	21	23464847	23508193	11	-3.68	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01Z	21	23655899	23664657	5	-5.7121	LARGE-LOSS	FOCAL	0	None
TCGA.CI.6621	21	23655899	23664657	5	-2.8634	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1H8	21	23655899	23664657	5	-6.8261	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A8F7	21	23655899	23664657	5	-8.7791	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DD	21	24023777	24043068	10	-5.5053	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3728	21	24031860	24043068	3	-5.8644	LARGE-LOSS	FOCAL	0	None
TCGA.DC.4745	21	26134773	26138470	3	-4.3395	LARGE-LOSS	FOCAL	0	None
TCGA.EF.5830	21	26134773	26138470	3	-1.6995	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A6GA	21	26729141	26729463	3	-4.1938	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	21	27056141	27141298	23	-1.4381	LARGE-LOSS	FOCAL	3	"ATP5J,GABPA,JAM2"
TCGA.F5.6810	21	27087164	27099643	3	-1.5781	LARGE-LOSS	FOCAL	2	"ATP5J,JAM2"
TCGA.AA.A010.01A	21	27121290	27141298	7	-1.798	LARGE-LOSS	FOCAL	1	GABPA
TCGA.AA.A00N.01A	21	27938538	28215722	10	-1.526	LARGE-LOSS	FOCAL	2	"ADAMTS1,CYYR1"
TCGA.CK.5914.01A	21	28209851	28215722	8	-1.4747	LARGE-LOSS	FOCAL	1	ADAMTS1
TCGA.AG.A01N.01A	21	28211864	28212568	2	-3.1753	LARGE-LOSS	FOCAL	1	ADAMTS1
TCGA.AA.A01K.01A	21	30438991	30439821	2	-5.1108	LARGE-LOSS	FOCAL	1	CCT8
TCGA.AF.3913	21	31292935	31293408	3	-3.8643	LARGE-LOSS	FOCAL	1	GRIK1
TCGA.AG.A026	21	32434838	32444208	3	-4.8007	LARGE-LOSS	FOCAL	0	None
TCGA.DY.A1DG	21	32461454	32471120	3	-1.6466	LARGE-LOSS	FOCAL	0	None
TCGA.A6.5665	21	32908592	32935111	8	-6.741	LARGE-LOSS	FOCAL	1	TIAM1
TCGA.AG.3909.01A	21	33036050	33040752	4	-1.452	LARGE-LOSS	FOCAL	1	SOD1
TCGA.AA.3529	21	33051523	33058570	3	-2.2698	LARGE-LOSS	FOCAL	1	SCAF4
TCGA.AG.3909.01A	21	33641291	33647073	4	-2.0136	LARGE-LOSS	FOCAL	1	MIS18A
TCGA.AA.A00N.01A	21	34099054	34109514	3	-1.7048	LARGE-LOSS	FOCAL	2	"PAXBP1,SYNJ1"
TCGA.AA.A00N.01A	21	34133322	34142075	4	-1.7444	LARGE-LOSS	FOCAL	1	PAXBP1
TCGA.EI.6512	21	34510879	34513063	3	-4.1018	LARGE-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	21	34851006	34870887	4	-1.9433	LARGE-LOSS	FOCAL	2	"DNAJC28,TMEM50B"
TCGA.AA.A00N.01A	21	34851006	34877831	6	-1.7621	LARGE-LOSS	FOCAL	3	"DNAJC28,GART,TMEM50B"
TCGA.AA.A00N.01A	21	34900464	34971419	41	-1.5884	LARGE-LOSS	FOCAL	4	"CRYZL1,DONSON,GART,SON"
TCGA.CK.5914.01A	21	34906847	34931886	13	-1.5349	LARGE-LOSS	FOCAL	2	"GART,SON"
TCGA.AA.A010.01A	21	34907489	34915351	3	-1.3907	LARGE-LOSS	FOCAL	2	"GART,SON"
TCGA.AA.A010.01A	21	34918482	34924021	4	-2.4963	LARGE-LOSS	FOCAL	1	SON
TCGA.AG.4009.01A	21	34921765	34963412	22	-1.5701	LARGE-LOSS	FOCAL	3	"CRYZL1,DONSON,SON"
TCGA.AA.A010.01A	21	34925135	34941811	8	-3.1228	LARGE-LOSS	FOCAL	1	SON
TCGA.AA.A010.01A	21	34944806	34948634	4	-2.3173	LARGE-LOSS	FOCAL	1	SON
TCGA.AG.3909.01A	21	34948634	34963412	11	-1.7007	LARGE-LOSS	FOCAL	3	"CRYZL1,DONSON,SON"
TCGA.AA.A010.01A	21	34950586	34955745	5	-1.6178	LARGE-LOSS	FOCAL	1	DONSON
TCGA.CK.5914.01A	21	34950586	35013451	24	-1.5738	LARGE-LOSS	FOCAL	2	"CRYZL1,DONSON"
TCGA.AA.A010.01A	21	35445932	35475246	8	-2.1105	LARGE-LOSS	FOCAL	2	"MRPS6,SLC5A3"
TCGA.AA.3866	21	36921338	36922837	4	-1.6321	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	21	37652517	37665589	7	-1.542	LARGE-LOSS	FOCAL	1	DOPEY2
TCGA.AA.A00N.01A	21	37744635	37780993	12	-1.6404	LARGE-LOSS	FOCAL	2	"CHAF1B,MORC3"
TCGA.AG.3909.01A	21	37759849	37775026	6	-1.4603	LARGE-LOSS	FOCAL	1	CHAF1B
TCGA.AA.A010.01A	21	38113981	38131991	8	-2.3314	LARGE-LOSS	FOCAL	2	"HLCS,SIM2"
TCGA.AD.6964	21	38297649	38298379	3	-6.9145	LARGE-LOSS	FOCAL	1	HLCS
TCGA.CM.5864	21	38399323	38401538	3	-6.0684	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A02G.01A	21	38599908	38600487	2	-5.09	LARGE-LOSS	FOCAL	1	DSCR3
TCGA.AA.3666	21	39527473	40734722	556	-1.3719	LARGE-LOSS	FOCAL	6	"BRWD1,ERG,ETS2,HMGN1,KCNJ15,PSMG1"
TCGA.AG.3909.01A	21	40181943	40558922	16	-1.3824	LARGE-LOSS	FOCAL	3	"BRWD1,ETS2,PSMG1"
TCGA.AG.A02G.01A	21	40184890	40186663	3	-5.3061	LARGE-LOSS	FOCAL	1	ETS2
TCGA.AA.A010.01A	21	40665740	40721326	11	-2.0488	LARGE-LOSS	FOCAL	2	"BRWD1,HMGN1"
TCGA.AA.A00N.01A	21	40715050	40719314	4	-2.1174	LARGE-LOSS	FOCAL	1	HMGN1
TCGA.AG.4009.01A	21	40715050	40720155	3	-1.4671	LARGE-LOSS	FOCAL	1	HMGN1
TCGA.AA.A010.01A	21	40969590	40984158	5	-2.3145	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	21	41674494	41681670	3	-6.7472	LARGE-LOSS	FOCAL	1	DSCAM
TCGA.AA.3977	21	41680870	41685420	3	-1.4117	LARGE-LOSS	FOCAL	1	DSCAM
TCGA.AF.3913	21	42123453	42124100	3	-4.1926	LARGE-LOSS	FOCAL	1	DSCAM
TCGA.AA.3667	21	42204221	42205791	3	-1.8045	LARGE-LOSS	FOCAL	1	DSCAM
TCGA.AA.A010.01A	21	42218465	42555501	7	-1.3899	LARGE-LOSS	FOCAL	3	"BACE2,DSCAM,PLAC4"
TCGA.A6.3808.01A	21	42762442	42852351	31	-1.38	LARGE-LOSS	FOCAL	3	"MX1,MX2,TMPRSS2"
TCGA.AA.A010.01A	21	43277238	43309181	9	-1.5694	LARGE-LOSS	FOCAL	2	"C2CD2,PRDM15"
TCGA.AA.A024.01A	21	43710112	43711174	2	-2.1278	LARGE-LOSS	FOCAL	1	ABCG1
TCGA.AG.3909.01A	21	43892854	43912836	7	-1.652	LARGE-LOSS	FOCAL	1	RSPH1
TCGA.AA.A010.01A	21	43902683	43959575	10	-1.3647	LARGE-LOSS	FOCAL	2	"RSPH1,SLC37A1"
TCGA.AG.3909.01A	21	44513164	44524372	6	-1.9418	LARGE-LOSS	FOCAL	1	U2AF1
TCGA.AG.4009.01A	21	44513164	44524372	6	-1.3607	LARGE-LOSS	FOCAL	1	U2AF1
TCGA.AA.A010.01A	21	44837372	44845855	9	-2.0637	LARGE-LOSS	FOCAL	1	SIK1
TCGA.AG.3602	21	44891717	44898325	3	-7.7842	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	21	45152221	45175515	10	-2.4157	LARGE-LOSS	FOCAL	1	PDXK
TCGA.AG.3909.01A	21	45194041	45212484	4	-1.6075	LARGE-LOSS	FOCAL	2	"CSTB,RRP1"
TCGA.AG.3909.01A	21	45391238	45402166	4	-1.988	LARGE-LOSS	FOCAL	1	AGPAT3
TCGA.AG.3584	21	45613824	45673648	24	-4.2517	LARGE-LOSS	FOCAL	2	"DNMT3L,ICOSLG"
TCGA.AA.A02R.01A	21	45651111	45656760	2	-6.557	LARGE-LOSS	FOCAL	1	ICOSLG
TCGA.AA.A010.01A	21	45651111	45783949	58	-1.4117	LARGE-LOSS	FOCAL	6	"AIRE,C21orf2,DNMT3L,ICOSLG,PFKL,TRPM2"
TCGA.AA.A02E.01A	21	45656760	45666248	2	-6.0606	LARGE-LOSS	FOCAL	2	"DNMT3L,ICOSLG"
TCGA.A6.3808.01A	21	45656760	45838307	75	-1.4996	LARGE-LOSS	FOCAL	6	"AIRE,C21orf2,DNMT3L,ICOSLG,PFKL,TRPM2"
TCGA.AG.3909.01A	21	45959421	46031971	19	-1.6303	LARGE-LOSS	FOCAL	8	"KRTAP10-1,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,TSPEAR"
TCGA.AA.A010.01A	21	46226772	46233853	4	-2.4813	LARGE-LOSS	FOCAL	1	SUMO3
TCGA.AA.A010.01A	21	46363569	46554633	8	-1.4439	LARGE-LOSS	FOCAL	2	"ADARB1,FAM207A"
TCGA.AA.3681	21	46487830	46491340	3	-2.4284	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3696	21	46487830	46491340	3	-2.2993	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3715	21	46487830	46491340	3	-1.4767	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3592	21	46487830	46491340	3	-4.0652	LARGE-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	21	46685359	46875404	11	-1.3776	LARGE-LOSS	FOCAL	2	"COL18A1,POFUT2"
TCGA.AF.2692	21	46848498	46864886	3	-1.4577	LARGE-LOSS	FOCAL	1	COL18A1
TCGA.CM.6170	21	46931108	46952749	3	-2.5906	LARGE-LOSS	FOCAL	2	"COL18A1,SLC19A1"
TCGA.AG.3909.01A	21	47699867	47865117	56	-1.3355	LARGE-LOSS	FOCAL	4	"C21orf58,MCM3AP,PCNT,YBEY"
TCGA.AA.A00N.01A	21	47700374	47711216	7	-2.3893	LARGE-LOSS	FOCAL	2	"MCM3AP,YBEY"
TCGA.CK.5914.01A	21	47703499	47711216	6	-2.1871	LARGE-LOSS	FOCAL	2	"MCM3AP,YBEY"
TCGA.AA.A010.01A	21	47711216	47754279	14	-2.1386	LARGE-LOSS	FOCAL	3	"C21orf58,PCNT,YBEY"
TCGA.CK.5914.01A	21	47767298	47916869	44	-1.6026	LARGE-LOSS	FOCAL	2	"DIP2A,PCNT"
TCGA.AG.A01J.01A	21	47975847	47977447	4	-3.7665	LARGE-LOSS	FOCAL	1	DIP2A
TCGA.AA.A00N.01A	21	48019239	48084135	14	-1.3456	LARGE-LOSS	FOCAL	2	"PRMT2,S100B"
TCGA.AG.3909.01A	21	48019239	48084135	12	-1.4821	LARGE-LOSS	FOCAL	2	"PRMT2,S100B"
TCGA.AA.A010.01A	21	48056802	48084135	12	-1.6125	LARGE-LOSS	FOCAL	1	PRMT2
TCGA.AG.4009.01A	21	48071688	48084135	5	-1.5806	LARGE-LOSS	FOCAL	1	PRMT2
TCGA.AG.3731	22	16055206	16061341	2	-1.374	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3495	22	16055206	16365494	3	-2.0789	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AA.3667	22	16055206	16365494	3	-3.7989	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AA.3693	22	16055206	16365494	3	-2.3719	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AA.3854	22	16055206	16365494	3	-1.8949	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AA.3867	22	16055206	16365494	3	-1.6949	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AA.3949	22	16055206	16365494	3	-1.9871	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AA.3956	22	16055206	16365494	3	-4.3974	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AA.3976	22	16055206	16365494	3	-6.9481	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AA.A01S	22	16055206	16365494	3	-1.48025	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AF.3913	22	16055206	16365494	3	-1.6141	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AG.3591	22	16055206	16365494	3	-4.4488	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AG.3726	22	16055206	16365494	3	-1.4045	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AG.3890	22	16055206	16365494	3	-1.3385	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AG.3898	22	16055206	16365494	3	-2.6425	LARGE-LOSS	FOCAL	1	POTEH
TCGA.CI.6620	22	16055206	16365494	3	-1.4343	LARGE-LOSS	FOCAL	1	POTEH
TCGA.DM.A1D8	22	16055206	16365494	3	-7.4137	LARGE-LOSS	FOCAL	1	POTEH
TCGA.DM.A1DB	22	16055206	16365494	3	-7.4308	LARGE-LOSS	FOCAL	1	POTEH
TCGA.DY.A1DF	22	16055206	16365494	3	-1.6008	LARGE-LOSS	FOCAL	1	POTEH
TCGA.EI.6513	22	16055206	16365494	3	-2.5987	LARGE-LOSS	FOCAL	1	POTEH
TCGA.EI.6881	22	16055206	16365494	3	-4.7654	LARGE-LOSS	FOCAL	1	POTEH
TCGA.F4.6808	22	16055206	16365494	3	-2.182	LARGE-LOSS	FOCAL	1	POTEH
TCGA.F5.6571	22	16055206	16365494	3	-2.0384	LARGE-LOSS	FOCAL	1	POTEH
TCGA.NH.A6GB	22	16055206	16365494	3	-4.0895	LARGE-LOSS	FOCAL	1	POTEH
TCGA.SS.A7HO	22	16055206	16365494	3	-1.6408	LARGE-LOSS	FOCAL	1	POTEH
TCGA.AD.6963	22	16055206	16877134	4	-1.9194	LARGE-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.AY.6196	22	16055206	16877134	4	-1.3808	LARGE-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.A6.3808.01A	22	16258257	17072448	7	-2.3315	LARGE-LOSS	FOCAL	3	"CCT8L2,OR11H1,POTEH"
TCGA.AA.A010.01A	22	16258257	17072448	9	-2.101	LARGE-LOSS	FOCAL	3	"CCT8L2,OR11H1,POTEH"
TCGA.AA.3530	22	17286146	17300319	5	-1.53	LARGE-LOSS	FOCAL	1	XKR3
TCGA.AA.3864	22	17286146	17300319	5	-1.5465	LARGE-LOSS	FOCAL	1	XKR3
TCGA.AA.A010.01A	22	17577875	17663443	23	-2.3483	LARGE-LOSS	FOCAL	4	"CECR1,CECR5,CECR6,IL17RA"
TCGA.AF.3914.01A	22	17586407	17600165	5	-2.0297	LARGE-LOSS	FOCAL	2	"CECR6,IL17RA"
TCGA.AA.3955	22	17761424	17768220	3	-4.7189	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3495	22	18626899	18629027	3	-2.2377	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3872	22	18628945	18629152	3	-4.1374	LARGE-LOSS	FOCAL	0	None
TCGA.CL.4957	22	18886914	18908640	9	-1.8361	LARGE-LOSS	FOCAL	2	"DGCR6,PRODH"
TCGA.EI.6881	22	18886914	18972449	22	-3.3967	LARGE-LOSS	FOCAL	2	"DGCR6,PRODH"
TCGA.AA.3973	22	18886914	19006983	34	-5.7555	LARGE-LOSS	FOCAL	2	"DGCR6,PRODH"
TCGA.NH.A6GA	22	18904837	18905116	3	-6.9656	LARGE-LOSS	FOCAL	1	PRODH
TCGA.A6.6781	22	18904994	18905605	3	-4.6135	LARGE-LOSS	FOCAL	1	PRODH
TCGA.CL.4957	22	18909275	19006124	23	-4.3035	LARGE-LOSS	FOCAL	1	PRODH
TCGA.AA.A010.01A	22	19026336	19035906	4	-1.541	LARGE-LOSS	FOCAL	1	DGCR2
TCGA.AA.A010.01A	22	19118863	19178768	21	-2.2384	LARGE-LOSS	FOCAL	5	"CLTCL1,DGCR14,GSC2,SLC25A1,TSSK2"
TCGA.AA.A010.01A	22	19385462	19420028	7	-1.4481	LARGE-LOSS	FOCAL	1	HIRA
TCGA.AA.A010.01A	22	19420730	19429196	4	-3.1273	LARGE-LOSS	FOCAL	2	"C22orf39,MRPL40"
TCGA.AA.A00N.01A	22	19420730	19483431	25	-1.3779	LARGE-LOSS	FOCAL	4	"C22orf39,CDC45,MRPL40,UFD1L"
TCGA.AA.A010.01A	22	19431756	19452661	9	-1.7779	LARGE-LOSS	FOCAL	2	"C22orf39,UFD1L"
TCGA.AA.A010.01A	22	19704754	19776069	18	-1.9823	LARGE-LOSS	FOCAL	4	"GNB1L,GP1BB,SEPT5,TBX1"
TCGA.AA.A010.01A	22	20052018	20096376	13	-2.0351	LARGE-LOSS	FOCAL	2	"DGCR8,TANGO2"
TCGA.AA.A010.01A	22	20097492	20104321	10	-1.6679	LARGE-LOSS	FOCAL	3	"DGCR8,RANBP1,TRMT2A"
TCGA.A6.3808.01A	22	20103218	20114424	10	-3.4921	LARGE-LOSS	FOCAL	2	"RANBP1,TRMT2A"
TCGA.AA.A010.01A	22	20105625	20116970	8	-2.8312	LARGE-LOSS	FOCAL	1	RANBP1
TCGA.A6.3808.01A	22	20116970	20720810	30	-1.5986	LARGE-LOSS	FOCAL	6	"DGCR6L,LOC388849,RIMBP3,RTN4R,TMEM191B,ZDHHC8"
TCGA.AA.A010.01A	22	20119422	20128692	8	-1.8827	LARGE-LOSS	FOCAL	1	ZDHHC8
TCGA.AG.A00H.01A	22	20717836	20718439	2	-5.7069	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	22	20936859	21096854	32	-1.9522	LARGE-LOSS	FOCAL	2	"MED15,PI4KA"
TCGA.AG.A00H.01A	22	21156214	21159214	4	-4.4051	LARGE-LOSS	FOCAL	1	PI4KA
TCGA.AA.A010.01A	22	21303951	21340061	17	-1.7459	LARGE-LOSS	FOCAL	3	"AIFM3,CRKL,LZTR1"
TCGA.A6.3808.01A	22	21414613	21828830	13	-1.6104	LARGE-LOSS	FOCAL	5	"HIC2,LRRC74B,RIMBP3B,RIMBP3C,TMEM191C"
TCGA.AH.6549.01A	22	21563009	21570759	4	-1.5073	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	22	21829457	21842131	7	-3.411	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	22	22024145	22029302	6	-2.1139	LARGE-LOSS	FOCAL	1	PPIL2
TCGA.AG.3909.01A	22	22024836	22042310	12	-1.3552	LARGE-LOSS	FOCAL	1	PPIL2
TCGA.AG.A02G.01A	22	22385599	23476166	67	-2.3261	LARGE-LOSS	FOCAL	8	"GGTLC2,GNAZ,IGLL5,PRAME,RSPH14,VPREB1,ZNF280A,ZNF280B"
TCGA.AA.3850	22	22491863	22496145	3	-1.38835	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	22	22986633	22989516	4	-3.5873	LARGE-LOSS	FOCAL	1	GGTLC2
TCGA.AG.A015.01A	22	23230207	23237508	3	-1.5501	LARGE-LOSS	FOCAL	1	IGLL5
TCGA.AA.3861.01A	22	23252659	23263484	4	-2.3396	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3862.01A	22	23252659	23263484	4	-2.7737	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	22	23401643	23406029	3	-2.2371	LARGE-LOSS	FOCAL	1	RSPH14
TCGA.AA.A010.01A	22	23503623	23523987	3	-2.2338	LARGE-LOSS	FOCAL	2	"BCR,RAB36"
TCGA.DM.A1HA	22	23877732	24002029	29	-7.5345	LARGE-LOSS	FOCAL	2	"DRICH1,IGLL1"
TCGA.DM.A1HA	22	24102407	24117915	4	-9.0801	LARGE-LOSS	FOCAL	3	"C22orf15,CHCHD10,MMP11"
TCGA.DM.A1HA	22	24133569	24171923	13	-1.802	LARGE-LOSS	FOCAL	1	SMARCB1
TCGA.DM.A1HA	22	24173393	24221404	16	-7.8526	LARGE-LOSS	FOCAL	3	"DERL3,SLC2A11,SMARCB1"
TCGA.AA.3679	22	24174334	24175100	3	-1.7966	LARGE-LOSS	FOCAL	1	SMARCB1
TCGA.AA.3509.01A	22	24373096	24384078	8	-4.1334	LARGE-LOSS	FOCAL	2	"GSTT1,LOC391322"
TCGA.AA.A010.01A	22	24963901	25006997	11	-1.6269	LARGE-LOSS	FOCAL	3	"GGT1,LRRC75B,SNRPD3"
TCGA.AA.3814	22	25641209	25916385	85	-2.8157	LARGE-LOSS	FOCAL	1	LRP5L
TCGA.AA.3561	22	25664248	25718898	6	-5.4396	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3655	22	25669568	25918708	69	-5.994	LARGE-LOSS	FOCAL	1	LRP5L
TCGA.A6.6141	22	25755598	25756162	3	-1.9934	LARGE-LOSS	FOCAL	1	LRP5L
TCGA.F4.6569	22	25755648	25757267	3	-4.0035	LARGE-LOSS	FOCAL	1	LRP5L
TCGA.AG.3584	22	26438494	26445387	3	-4.6173	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3831	22	26442106	26445426	3	-2.6133	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	22	26776170	26849178	5	-1.5808	LARGE-LOSS	FOCAL	3	"ASPHD2,HPS4,SEZ6L"
TCGA.AA.A00N.01A	22	26868221	26887378	10	-1.6522	LARGE-LOSS	FOCAL	2	"HPS4,SRRD"
TCGA.AD.6889	22	27051298	27058524	5	-4.0569	LARGE-LOSS	FOCAL	0	None
TCGA.AD.6965	22	28273287	28318031	15	-2.5043	LARGE-LOSS	FOCAL	1	PITPNB
TCGA.AA.A00N.01A	22	28306905	28386692	7	-1.3893	LARGE-LOSS	FOCAL	2	"PITPNB,TTC28"
TCGA.AA.A010.01A	22	29925103	29935267	5	-1.3915	LARGE-LOSS	FOCAL	1	THOC5
TCGA.AA.A010.01A	22	29938799	29960249	11	-1.9952	LARGE-LOSS	FOCAL	2	"NIPSNAP1,THOC5"
TCGA.AG.A025.01A	22	29956674	29960249	5	-4.0259	LARGE-LOSS	FOCAL	1	NIPSNAP1
TCGA.AA.A010.01A	22	29965159	29966357	3	-1.4702	LARGE-LOSS	FOCAL	1	NIPSNAP1
TCGA.AA.A010.01A	22	30090665	30144369	11	-1.6689	LARGE-LOSS	FOCAL	3	"CABP7,NF2,ZMAT5"
TCGA.AA.A010.01A	22	30774021	30782563	6	-2.3007	LARGE-LOSS	FOCAL	1	RNF215
TCGA.AA.A010.01A	22	30782980	30806535	10	-1.5743	LARGE-LOSS	FOCAL	2	"RNF215,SEC14L2"
TCGA.AA.A01I.01A	22	30888426	30891224	4	-3.7918	LARGE-LOSS	FOCAL	1	SEC14L4
TCGA.AF.3914.01A	22	30934764	30976506	8	-1.4651	LARGE-LOSS	FOCAL	3	"GAL3ST1,PES1,SEC14L6"
TCGA.AA.A010.01A	22	30972978	30985137	12	-2.4082	LARGE-LOSS	FOCAL	1	PES1
TCGA.AA.A02J.01A	22	30974782	30975087	2	-7.1222	LARGE-LOSS	FOCAL	1	PES1
TCGA.AA.A010.01A	22	31089962	31090850	3	-2.5743	LARGE-LOSS	FOCAL	1	OSBP2
TCGA.AA.A010.01A	22	31342281	31363745	6	-2.3205	LARGE-LOSS	FOCAL	1	MORC2
TCGA.AA.A010.01A	22	31654277	31741081	26	-2.2286	LARGE-LOSS	FOCAL	3	"LIMK2,PATZ1,PIK3IP1"
TCGA.AF.3914.01A	22	31662912	31685136	11	-1.4315	LARGE-LOSS	FOCAL	2	"LIMK2,PIK3IP1"
TCGA.AA.A00N.01A	22	31867800	31904141	3	-1.5898	LARGE-LOSS	FOCAL	2	"EIF4ENIF1,SFI1"
TCGA.AA.A00N.01A	22	31976233	31998137	5	-1.6729	LARGE-LOSS	FOCAL	1	SFI1
TCGA.AA.A02E.01A	22	31998137	31998561	2	-6.4196	LARGE-LOSS	FOCAL	1	SFI1
TCGA.AA.A010.01A	22	32330064	32352089	6	-2.0766	LARGE-LOSS	FOCAL	2	"C22orf24,YWHAH"
TCGA.A6.3808.01A	22	32545510	32554923	8	-3.7786	LARGE-LOSS	FOCAL	1	C22orf42
TCGA.AA.3982	22	33541546	33542525	3	-1.8065	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A28A	22	33797681	33820349	13	-4.6196	LARGE-LOSS	FOCAL	1	LARGE
TCGA.AA.3850	22	34766076	34768744	3	-4.36455	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	22	34899171	34899332	4	-2.3145	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01J.01A	22	36889659	36913299	11	-2.7543	LARGE-LOSS	FOCAL	2	"EIF3D,FOXRED2"
TCGA.D5.6932	22	37298011	37301349	4	-7.0927	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3688	22	37642924	37648613	5	-6.0246	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3558	22	37749396	37749945	3	-1.4634	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3975	22	37749396	37749945	3	-5.1949	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A01T	22	37749396	37749945	3	-8.083	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4614	22	37749396	37749945	3	-9.5342	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.6605	22	37749396	37749945	3	-1.8363	LARGE-LOSS	FOCAL	0	None
TCGA.EI.7004	22	37749396	37749945	3	-2.3649	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6460	22	37749396	37749945	3	-5.1776	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	22	38035724	38075560	21	-1.3411	LARGE-LOSS	FOCAL	3	"LGALS1,PDXP,SH3BP1"
TCGA.AA.A010.01A	22	38201522	38236118	16	-2.24	LARGE-LOSS	FOCAL	4	"ANKRD54,GALR3,GCAT,H1F0"
TCGA.AG.A00H.01A	22	38236118	38245948	4	-4.3558	LARGE-LOSS	FOCAL	2	"ANKRD54,EIF3L"
TCGA.AA.A010.01A	22	38352737	38504206	42	-1.4297	LARGE-LOSS	FOCAL	5	"BAIAP2L2,PICK1,POLR2F,SLC16A8,SOX10"
TCGA.AA.A010.01A	22	38609778	38894394	39	-1.3592	LARGE-LOSS	FOCAL	7	"CSNK1E,DDX17,KCNJ4,KDELR3,LOC400927-CSNK1E,MAFF,TMEM184B"
TCGA.AF.3914.01A	22	38693070	38823142	8	-1.5752	LARGE-LOSS	FOCAL	3	"CSNK1E,KCNJ4,LOC400927-CSNK1E"
TCGA.AA.A010.01A	22	39137439	39268085	19	-1.6404	LARGE-LOSS	FOCAL	4	"CBX6,DNAL4,NPTXR,SUN2"
TCGA.A6.3810.01A	22	39358421	39387999	8	-1.5295	LARGE-LOSS	FOCAL	3	"APOBEC3A,APOBEC3A_B,APOBEC3B"
TCGA.AA.A010.01A	22	39529849	39639851	13	-1.7122	LARGE-LOSS	FOCAL	2	"CBX7,PDGFB"
TCGA.AG.3909.01A	22	39907812	39917828	5	-1.6237	LARGE-LOSS	FOCAL	2	"ATF4,MIEF1"
TCGA.AA.A010.01A	22	40054118	40080275	26	-1.4868	LARGE-LOSS	FOCAL	1	CACNA1I
TCGA.AG.3909.01A	22	40745835	40762387	11	-1.502	LARGE-LOSS	FOCAL	1	ADSL
TCGA.AA.A00N.01A	22	40745835	40763446	12	-1.4151	LARGE-LOSS	FOCAL	1	ADSL
TCGA.AA.A010.01A	22	42280795	42321344	11	-1.638	LARGE-LOSS	FOCAL	3	"SHISA8,SREBF2,TNFRSF13C"
TCGA.AA.A010.01A	22	42377618	42392837	10	-2.0536	LARGE-LOSS	FOCAL	1	3-Sep
TCGA.AA.A00N.01A	22	42383150	42390278	6	-1.3607	LARGE-LOSS	FOCAL	1	3-Sep
TCGA.AA.A00N.01A	22	42477882	42483022	3	-2.0866	LARGE-LOSS	FOCAL	2	"NDUFA6,SMDT1"
TCGA.AG.3909.01A	22	42477882	42524809	9	-1.6261	LARGE-LOSS	FOCAL	3	"CYP2D6,NDUFA6,SMDT1"
TCGA.CK.4952.01A	22	42482912	42492476	2	-2.6099	LARGE-LOSS	FOCAL	1	NDUFA6
TCGA.DC.6160.01A	22	42482912	42492476	2	-2.674	LARGE-LOSS	FOCAL	1	NDUFA6
TCGA.AG.3909.01A	22	42952457	42998909	15	-1.3599	LARGE-LOSS	FOCAL	2	"POLDIP3,SERHL2"
TCGA.AA.3522	22	42957287	42980050	3	-4.5305	LARGE-LOSS	FOCAL	2	"POLDIP3,SERHL2"
TCGA.AG.3909.01A	22	43471432	43557009	8	-1.4566	LARGE-LOSS	FOCAL	4	"BIK,MCAT,TSPO,TTLL1"
TCGA.A6.A56B	22	44388317	44391233	3	-7.075	LARGE-LOSS	FOCAL	1	SAMM50
TCGA.AA.A00N.01A	22	45197903	45218199	5	-1.4926	LARGE-LOSS	FOCAL	2	"ARHGAP8,PRR5-ARHGAP8"
TCGA.AA.A00N.01A	22	45564007	45580327	8	-1.6955	LARGE-LOSS	FOCAL	1	NUP50
TCGA.AG.3909.01A	22	45564007	45593624	8	-1.3663	LARGE-LOSS	FOCAL	2	"KIAA0930,NUP50"
TCGA.A6.3808.01A	22	45574137	45580327	4	-3.2672	LARGE-LOSS	FOCAL	1	NUP50
TCGA.A6.3808.01A	22	45813440	45828142	5	-2.9467	LARGE-LOSS	FOCAL	1	RIBC2
TCGA.AA.A010.01A	22	46345773	46447644	5	-2.1905	LARGE-LOSS	FOCAL	2	"PRR34,WNT7B"
TCGA.AZ.4614	22	46423124	46494681	19	-3.8662	LARGE-LOSS	FOCAL	1	PRR34
TCGA.AA.A010.01A	22	46640951	46657211	8	-2.3606	LARGE-LOSS	FOCAL	2	"CDPF1,PKDREJ"
TCGA.AF.3914.01A	22	46644042	46657826	6	-1.592	LARGE-LOSS	FOCAL	2	"CDPF1,PKDREJ"
TCGA.AA.A01Q.01A	22	46652488	46657211	4	-1.4543	LARGE-LOSS	FOCAL	1	PKDREJ
TCGA.AG.3909.01A	22	46652488	46749617	35	-1.4633	LARGE-LOSS	FOCAL	4	"GTSE1,PKDREJ,TRMU,TTC38"
TCGA.AA.A010.01A	22	46657826	46681069	13	-1.628	LARGE-LOSS	FOCAL	2	"PKDREJ,TTC38"
TCGA.AG.3909.01A	22	47569089	50192154	10	-1.3468	LARGE-LOSS	FOCAL	4	"BRD1,C22orf34,FAM19A5,TBC1D22A"
TCGA.D5.6926	22	48757575	48759227	3	-2.16	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3561	22	48842453	48842547	3	-7.9315	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3877	22	48842453	48842547	3	-2.3482	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3684	22	48842464	48843194	3	-4.0522	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	22	48885358	48972239	5	-1.5555	LARGE-LOSS	FOCAL	1	FAM19A5
TCGA.CA.5796	22	49825402	49827531	3	-5.065	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3858	22	49856120	49866136	3	-2.1439	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3971	22	49856120	49866136	3	-3.8683	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	22	50197841	50217117	3	-2.4546	LARGE-LOSS	FOCAL	1	BRD1
TCGA.AA.3848	22	50225149	50227504	3	-6.713	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	22	50303525	50436376	18	-2.3735	LARGE-LOSS	FOCAL	4	"ALG12,CRELD2,IL17REL,PIM3"
TCGA.AA.A010.01A	22	50485558	50537824	19	-2.4406	LARGE-LOSS	FOCAL	2	"MLC1,MOV10L1"
TCGA.AA.A010.01A	22	50588002	50654099	24	-2.224	LARGE-LOSS	FOCAL	4	"MOV10L1,PANX2,SELO,TRABD"
TCGA.AA.A010.01A	22	50655089	50683861	20	-1.3584	LARGE-LOSS	FOCAL	3	"HDAC10,SELO,TUBGCP6"
TCGA.AA.A010.01A	22	50684677	50757199	54	-1.9352	LARGE-LOSS	FOCAL	5	"DENND6B,HDAC10,MAPK11,MAPK12,PLXNB2"
TCGA.A6.3808.01A	22	50685067	50754389	50	-1.9427	LARGE-LOSS	FOCAL	5	"DENND6B,HDAC10,MAPK11,MAPK12,PLXNB2"
TCGA.AA.A010.01A	22	50898701	50987559	48	-1.4193	LARGE-LOSS	FOCAL	9	"ADM2,KLHDC7B,LMF2,MIOX,NCAPH2,ODF3B,SBF1,SCO2,TYMP"
TCGA.AA.A010.01A	22	50989164	51020141	20	-2.7236	LARGE-LOSS	FOCAL	4	"CHKB,CPT1B,KLHDC7B,SYCE3"
TCGA.AA.A02J.01A	22	51014948	51015299	2	-7.5766	LARGE-LOSS	FOCAL	1	CPT1B
TCGA.AA.A010.01A	22	51020627	51039184	3	-1.6174	LARGE-LOSS	FOCAL	2	"CHKB,MAPK8IP2"
TCGA.AA.A010.01A	22	51040180	51049074	8	-2.5752	LARGE-LOSS	FOCAL	1	MAPK8IP2
TCGA.AA.A010.01A	22	51113438	51183070	25	-2.4443	LARGE-LOSS	FOCAL	2	"ACR,SHANK3"
TCGA.AA.A010.01A	22	51207154	51223594	10	-1.7499	LARGE-LOSS	FOCAL	1	RABL2B
TCGA.AA.A010.01A	23	200803	347475	25	-1.8797	LARGE-LOSS	FOCAL	3	"GTPBP6,PLCXD1,PPP2R3B"
TCGA.AA.3939.01A	23	302030	306242	3	-1.4761	LARGE-LOSS	FOCAL	1	PPP2R3B
TCGA.AA.A010.01A	23	1460601	1505473	11	-2.6768	LARGE-LOSS	FOCAL	2	"IL3RA,SLC25A6"
TCGA.AA.3941	23	4023250	4027055	3	-2.179	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	23	5384937	5387839	6	-5.2952	LARGE-LOSS	FOCAL	0	None
TCGA.AH.6549.01A	23	6968286	7023611	3	-1.5742	LARGE-LOSS	FOCAL	1	HDHD1
TCGA.A6.6653	23	7014984	7106205	31	-3.2447	LARGE-LOSS	FOCAL	1	HDHD1
TCGA.NH.A6GB	23	7103205	7106205	4	-1.8599	LARGE-LOSS	FOCAL	0	None
TCGA.A6.A56B	23	7266198	7678723	121	-3.3091	LARGE-LOSS	FOCAL	1	STS
TCGA.A6.2686	23	7377079	7486366	36	-2.8149	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3529	23	7486366	7561714	33	-3.3998	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2674	23	7559993	7561104	3	-6.9536	LARGE-LOSS	FOCAL	0	None
TCGA.AZ.4615	23	7802735	8034457	103	-3.7325	LARGE-LOSS	FOCAL	2	"PNPLA4,VCX"
TCGA.A6.6138	23	7894782	8074570	53	-2.4514	LARGE-LOSS	FOCAL	1	PNPLA4
TCGA.AA.A00N.01A	23	8759289	8766109	5	-1.3937	LARGE-LOSS	FOCAL	1	FAM9A
TCGA.A6.6652	23	9644592	9728520	40	-5.9059	LARGE-LOSS	FOCAL	2	"GPR143,TBL1X"
TCGA.AA.A017.01A	23	9659572	9660106	2	-4.0606	LARGE-LOSS	FOCAL	1	TBL1X
TCGA.AA.A02E.01A	23	9659572	9660106	2	-6.7537	LARGE-LOSS	FOCAL	1	TBL1X
TCGA.AF.2693	23	10086985	10096417	3	-6.3959	LARGE-LOSS	FOCAL	1	WWC3
TCGA.AG.3909.01A	23	11130144	11160317	8	-1.5195	LARGE-LOSS	FOCAL	2	"ARHGAP6,HCCS"
TCGA.AA.A010.01A	23	11776336	11793082	14	-3.2309	LARGE-LOSS	FOCAL	1	MSL3
TCGA.AA.A00N.01A	23	11777882	11781852	7	-2.1405	LARGE-LOSS	FOCAL	1	MSL3
TCGA.AA.A010.01A	23	12809566	12828114	4	-2.4002	LARGE-LOSS	FOCAL	1	PRPS2
TCGA.D5.6539	23	13719490	13720173	4	-1.7998	LARGE-LOSS	FOCAL	1	RAB9A
TCGA.AA.3811	23	14644735	14658602	5	-6.4561	LARGE-LOSS	FOCAL	1	GLRA2
TCGA.AA.A010.01A	23	14913377	14937747	12	-1.4408	LARGE-LOSS	FOCAL	1	MOSPD2
TCGA.AA.A010.01A	23	15821764	15849587	10	-1.7525	LARGE-LOSS	FOCAL	2	"AP1S2,ZRSR2"
TCGA.AA.A00N.01A	23	15833770	15870430	11	-1.5228	LARGE-LOSS	FOCAL	2	"AP1S2,ZRSR2"
TCGA.AA.A010.01A	23	15851026	15870430	5	-2.9935	LARGE-LOSS	FOCAL	1	AP1S2
TCGA.AA.A010.01A	23	16863091	16888092	13	-2.9579	LARGE-LOSS	FOCAL	1	RBBP7
TCGA.AG.3612	23	17844327	18064780	30	-2.0695	LARGE-LOSS	FOCAL	1	RAI2
TCGA.AA.A02H.01A	23	18917231	18919566	3	-3.2873	LARGE-LOSS	FOCAL	1	PHKA2
TCGA.AA.A017.01A	23	18918703	18919566	2	-3.0761	LARGE-LOSS	FOCAL	1	PHKA2
TCGA.AA.A01C.01A	23	18918703	18919566	2	-3.1484	LARGE-LOSS	FOCAL	1	PHKA2
TCGA.AA.A02R.01A	23	19389026	19389411	2	-5.2253	LARGE-LOSS	FOCAL	1	MAP3K15
TCGA.A6.3808.01A	23	20146328	20156612	6	-3.2296	LARGE-LOSS	FOCAL	1	EIF1AX
TCGA.AA.A00N.01A	23	20146328	20156612	6	-1.6647	LARGE-LOSS	FOCAL	1	EIF1AX
TCGA.AG.3909.01A	23	20146328	20156612	6	-1.4306	LARGE-LOSS	FOCAL	1	EIF1AX
TCGA.AG.3909.01A	23	23685666	23701709	6	-1.3549	LARGE-LOSS	FOCAL	1	PRDX4
TCGA.A6.3808.01A	23	23704051	24382555	61	-1.7079	LARGE-LOSS	FOCAL	10	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,PRDX4,SAT1,SUPT20HL1,SUPT20HL2,ZFX"
TCGA.AG.A01J.01A	23	23722759	23723567	3	-3.8132	LARGE-LOSS	FOCAL	1	ACOT9
TCGA.AA.A00N.01A	23	24073687	24084075	6	-1.7982	LARGE-LOSS	FOCAL	1	EIF2S3
TCGA.AA.3660	23	24352160	24387517	5	-3.6375	LARGE-LOSS	FOCAL	1	SUPT20HL1
TCGA.AG.3909.01A	23	24717525	24734447	6	-1.744	LARGE-LOSS	FOCAL	1	POLA1
TCGA.AA.A00N.01A	23	24717525	24745043	13	-1.707	LARGE-LOSS	FOCAL	1	POLA1
TCGA.AA.A010.01A	23	24717525	24751856	16	-1.571	LARGE-LOSS	FOCAL	1	POLA1
TCGA.AA.A010.01A	23	25013905	25033651	6	-2.9291	LARGE-LOSS	FOCAL	2	"ARX,POLA1"
TCGA.CI.6619	23	25736024	25743705	3	-6.0996	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A8F7	23	25798544	25805514	3	-3.6043	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3524	23	28684526	29907511	348	-4.4532	LARGE-LOSS	FOCAL	1	IL1RAPL1
TCGA.AA.3850	23	28823040	28857892	26	-4.61525	LARGE-LOSS	FOCAL	1	IL1RAPL1
TCGA.AA.3941	23	28823040	28857892	27	-2.9454	LARGE-LOSS	FOCAL	1	IL1RAPL1
TCGA.AA.3982	23	28825969	28857892	24	-2.8942	LARGE-LOSS	FOCAL	1	IL1RAPL1
TCGA.AA.3844	23	28855552	28856587	4	-4.4239	LARGE-LOSS	FOCAL	1	IL1RAPL1
TCGA.D5.6928	23	28871085	28872231	3	-6.3198	LARGE-LOSS	FOCAL	1	IL1RAPL1
TCGA.AA.A02R.01A	23	30236646	30255122	4	-3.4223	LARGE-LOSS	FOCAL	2	"MAGEB2,MAGEB3"
TCGA.AA.3850	23	30456130	30459138	5	-7.24625	LARGE-LOSS	FOCAL	0	None
TCGA.G4.6626	23	34348251	34512644	68	-2.3107	LARGE-LOSS	FOCAL	0	None
TCGA.F4.6463	23	36501469	36745125	76	-2.1853	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	38176521	38182624	5	-1.6305	LARGE-LOSS	FOCAL	1	RPGR
TCGA.AA.A004.01A	23	39921385	39922889	3	-3.7866	LARGE-LOSS	FOCAL	1	BCOR
TCGA.F5.6813	23	40210447	40228947	3	-6.2393	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	23	41073784	41206831	24	-2.0337	LARGE-LOSS	FOCAL	2	"DDX3X,USP9X"
TCGA.AA.A010.01A	23	44879806	44928807	13	-2.2551	LARGE-LOSS	FOCAL	1	KDM6A
TCGA.AA.3850	23	45399555	45416668	3	-6.24505	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	46736901	46753892	5	-1.6116	LARGE-LOSS	FOCAL	1	RP2
TCGA.AA.A02J.01A	23	47058175	47058676	2	-7.1651	LARGE-LOSS	FOCAL	1	UBA1
TCGA.A6.3808.01A	23	47926171	48270161	31	-1.8551	LARGE-LOSS	FOCAL	8	"SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,ZNF630"
TCGA.AA.A00N.01A	23	47969317	47978864	6	-1.4258	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	48244774	48270714	4	-2.2313	LARGE-LOSS	FOCAL	2	"SSX4,SSX4B"
TCGA.AA.A02J.01A	23	48433902	48434597	2	-4.5801	LARGE-LOSS	FOCAL	1	RBM3
TCGA.AA.A010.01A	23	48542191	48565791	14	-2.1993	LARGE-LOSS	FOCAL	2	"SUV39H1,WAS"
TCGA.AA.A010.01A	23	48791686	48831558	10	-2.4705	LARGE-LOSS	FOCAL	3	"GRIPAP1,KCND1,OTUD5"
TCGA.AA.A010.01A	23	48832399	48846016	10	-1.4185	LARGE-LOSS	FOCAL	1	GRIPAP1
TCGA.AA.A010.01A	23	49019139	49032004	10	-1.8256	LARGE-LOSS	FOCAL	3	"MAGIX,PLP2,PRICKLE3"
TCGA.AA.A02J.01A	23	49068307	49068636	2	-6.7784	LARGE-LOSS	FOCAL	1	CACNA1F
TCGA.AA.A010.01A	23	49105577	49173629	18	-1.693	LARGE-LOSS	FOCAL	4	"CCDC22,FOXP3,GAGE10,PPP1R3F"
TCGA.AA.3850	23	50787053	51097274	50	-2.09235	LARGE-LOSS	FOCAL	1	NUDT10
TCGA.AA.A00N.01A	23	53107296	53116931	9	-1.4366	LARGE-LOSS	FOCAL	2	"GPR173,TSPYL2"
TCGA.AG.3909.01A	23	53112249	53116931	5	-1.9362	LARGE-LOSS	FOCAL	1	TSPYL2
TCGA.AG.3909.01A	23	53453174	53458754	7	-1.5314	LARGE-LOSS	FOCAL	2	"HSD17B10,RIBC1"
TCGA.AA.A010.01A	23	53588687	53596534	8	-1.8796	LARGE-LOSS	FOCAL	1	HUWE1
TCGA.AA.A010.01A	23	53600673	53611129	7	-1.4926	LARGE-LOSS	FOCAL	1	HUWE1
TCGA.AA.A010.01A	23	53611942	53627027	12	-1.9693	LARGE-LOSS	FOCAL	1	HUWE1
TCGA.AA.A010.01A	23	53629496	53661133	20	-3.2554	LARGE-LOSS	FOCAL	1	HUWE1
TCGA.AA.A010.01A	23	53672224	53674269	2	-1.8185	LARGE-LOSS	FOCAL	1	HUWE1
TCGA.D5.6539	23	53966154	53989145	4	-1.5637	LARGE-LOSS	FOCAL	1	PHF8
TCGA.AD.A5EJ	23	53974053	54007888	3	-6.8315	LARGE-LOSS	FOCAL	1	PHF8
TCGA.AA.A010.01A	23	54142929	54228377	12	-1.6197	LARGE-LOSS	FOCAL	2	"FAM120C,WNK3"
TCGA.AG.3612	23	55122782	55127128	6	-5.0243	LARGE-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	23	57620620	57935244	3	-1.7035	LARGE-LOSS	FOCAL	2	"ZXDA,ZXDB"
TCGA.D5.5541	23	63316075	63451685	11	-5.6587	LARGE-LOSS	FOCAL	2	"AMER1,ASB12"
TCGA.AA.A010.01A	23	68725095	68749377	3	-1.9702	LARGE-LOSS	FOCAL	1	FAM155B
TCGA.AG.3612	23	69406378	69406953	3	-9.4809	LARGE-LOSS	FOCAL	1	DGAT2L6
TCGA.AG.A025.01A	23	69495925	69508220	22	-1.6328	LARGE-LOSS	FOCAL	3	"ARR3,PDZD11,RAB41"
TCGA.AA.A01I.01A	23	69497203	69498336	4	-2.7686	LARGE-LOSS	FOCAL	1	ARR3
TCGA.AA.A00N.01A	23	69502597	69595901	25	-1.476	LARGE-LOSS	FOCAL	3	"KIF4A,PDZD11,RAB41"
TCGA.AG.3909.01A	23	69561598	69606422	8	-1.4533	LARGE-LOSS	FOCAL	1	KIF4A
TCGA.AG.A02X.01A	23	69622364	69626696	6	-2.6674	LARGE-LOSS	FOCAL	1	KIF4A
TCGA.AA.A010.01A	23	69649321	69665055	5	-1.864	LARGE-LOSS	FOCAL	2	"DLG3,GDPD2"
TCGA.AA.A010.01A	23	69668356	69698962	11	-2.5557	LARGE-LOSS	FOCAL	1	DLG3
TCGA.AA.3850	23	69864931	69865844	3	-6.05765	LARGE-LOSS	FOCAL	1	TEX11
TCGA.AA.A010.01A	23	70280819	70287975	4	-2.575	LARGE-LOSS	FOCAL	1	SNX12
TCGA.AA.A01I.01A	23	70361131	70361946	3	-3.4194	LARGE-LOSS	FOCAL	1	MED12
TCGA.AG.A01N.01A	23	70361672	70361946	2	-4.9211	LARGE-LOSS	FOCAL	1	MED12
TCGA.AA.A00N.01A	23	70627377	70680437	11	-1.4955	LARGE-LOSS	FOCAL	1	TAF1
TCGA.AG.3909.01A	23	70641095	70680437	9	-1.4423	LARGE-LOSS	FOCAL	1	TAF1
TCGA.AA.A024.01A	23	70753069	70757637	3	-3.037	LARGE-LOSS	FOCAL	1	OGT
TCGA.AA.A010.01A	23	71349704	71379666	14	-2.335	LARGE-LOSS	FOCAL	3	"FLJ44635,NHSL2,RGAG4"
TCGA.AA.A010.01A	23	71521526	71549817	5	-2.0361	LARGE-LOSS	FOCAL	2	"CITED1,HDAC8"
TCGA.AA.3982	23	71609305	71640476	5	-5.3767	LARGE-LOSS	FOCAL	1	HDAC8
TCGA.AA.A010.01A	23	71877377	72224596	19	-2.2157	LARGE-LOSS	FOCAL	4	"DMRTC1,DMRTC1B,PABPC1L2B,PHKA1"
TCGA.F5.6811.01A	23	72008959	72010373	2	-1.5015	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A020	23	75507251	75527437	3	-4.0669	LARGE-LOSS	FOCAL	0	None
TCGA.AG.4021	23	79038886	79039500	3	-7.4108	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AATE	23	79091519	79098201	3	-4.115	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A01L.01A	23	79281130	79283445	4	-1.3606	LARGE-LOSS	FOCAL	1	TBX22
TCGA.DM.A1HB	23	79478035	79478343	3	-5.8663	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2686	23	81287498	81312746	5	-5.6239	LARGE-LOSS	FOCAL	0	None
TCGA.NH.A50U	23	81358987	81364854	3	-3.1321	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	83389752	83599208	14	-1.408	LARGE-LOSS	FOCAL	2	"HDX,RPS6KA6"
TCGA.AA.A010.01A	23	84502522	84525639	7	-2.6061	LARGE-LOSS	FOCAL	1	ZNF711
TCGA.AA.3977	23	86312694	86328055	4	-6.8037	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	23	86453873	86455068	6	-6.3751	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6931	23	88521685	88545796	3	-5.7871	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A1HA	23	92792019	92978247	46	-6.7947	LARGE-LOSS	FOCAL	2	"FAM133A,NAP1L3"
TCGA.AA.3941	23	93431003	93439543	7	-6.0643	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6538	23	94374838	94379374	4	-1.5223	LARGE-LOSS	FOCAL	0	None
TCGA.D5.6538	23	94418724	94433916	5	-1.8838	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3811	23	94503212	94545858	4	-7.7383	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	23	94503212	95164679	129	-1.3716	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	23	97291680	97401201	33	-3.0707	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	23	97291680	97428728	43	-4.12465	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3941	23	97291680	97611309	75	-2.1148	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	99657515	99662997	4	-3.0257	LARGE-LOSS	FOCAL	1	PCDH19
TCGA.AA.A010.01A	23	100228617	100245496	7	-2.0005	LARGE-LOSS	FOCAL	1	ARL13A
TCGA.AG.A01J.01A	23	100243140	100274236	4	-1.7058	LARGE-LOSS	FOCAL	2	"ARL13A,TRMT2B"
TCGA.AA.A010.01A	23	100530143	100547751	12	-1.9682	LARGE-LOSS	FOCAL	1	TAF7L
TCGA.AG.A01N.01A	23	100652757	100653721	3	-4.164	LARGE-LOSS	FOCAL	2	"GLA,RPL36A-HNRNPH2"
TCGA.AZ.4684.01A	23	101615448	101620168	3	-3.4865	LARGE-LOSS	FOCAL	2	"NXF2,NXF2B"
TCGA.AA.A010.01A	23	103295317	103499408	14	-1.8287	LARGE-LOSS	FOCAL	5	"ESX1,FAM199X,H2BFM,SLC25A53,ZCCHC18"
TCGA.AA.3850	23	103789209	105825185	292	-1.84775	LARGE-LOSS	FOCAL	5	"IL1RAPL2,MUM1L1,NRK,SERPINA7,TEX13A"
TCGA.AA.3986	23	103957820	103961048	3	-6.5615	LARGE-LOSS	FOCAL	1	IL1RAPL2
TCGA.D5.6931	23	104407004	104455232	8	-2.6927	LARGE-LOSS	FOCAL	1	IL1RAPL2
TCGA.AA.3864	23	105728587	105835866	10	-3.8464	LARGE-LOSS	FOCAL	0	None
TCGA.AG.A025.01A	23	106144640	106145307	2	-6.0715	LARGE-LOSS	FOCAL	2	"CLDN2,RIPPLY1"
TCGA.AA.A010.01A	23	106221281	106242847	7	-2.7779	LARGE-LOSS	FOCAL	1	MORC4
TCGA.AA.A010.01A	23	107037450	107169864	11	-1.5998	LARGE-LOSS	FOCAL	1	MID2
TCGA.AA.A02H.01A	23	107413112	107414557	3	-2.7164	LARGE-LOSS	FOCAL	1	COL4A6
TCGA.AA.A010.01A	23	107913363	108635085	19	-1.6584	LARGE-LOSS	FOCAL	3	"COL4A5,GUCY2F,IRS4"
TCGA.AG.3598	23	108599650	108698351	28	-2.9325	LARGE-LOSS	FOCAL	1	GUCY2F
TCGA.AA.3986	23	108614349	108696980	24	-1.9467	LARGE-LOSS	FOCAL	1	GUCY2F
TCGA.AA.A00N.01A	23	108887211	108926368	13	-1.4201	LARGE-LOSS	FOCAL	1	ACSL4
TCGA.AA.A017.01A	23	110491749	110492116	2	-4.0339	LARGE-LOSS	FOCAL	1	CAPN6
TCGA.AA.A02H.01A	23	110924388	110928176	3	-5.4568	LARGE-LOSS	FOCAL	1	ALG13
TCGA.AZ.6606	23	111556006	111567297	9	-2.2706	LARGE-LOSS	FOCAL	1	ZCCHC16
TCGA.AA.3850	23	111590738	111608725	11	-5.28955	LARGE-LOSS	FOCAL	1	ZCCHC16
TCGA.AA.3841	23	112104226	112241873	53	-3.2805	LARGE-LOSS	FOCAL	0	None
TCGA.DM.A285	23	112258018	112259924	5	-1.6083	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	23	114221033	114228824	9	-5.90965	LARGE-LOSS	FOCAL	0	None
TCGA.A6.2685	23	115539234	115542087	3	-1.8743	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	23	116170035	116191036	10	-4.56045	LARGE-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	23	117752476	117874933	23	-1.9509	LARGE-LOSS	FOCAL	2	"DOCK11,IL13RA1"
TCGA.AA.A010.01A	23	117874933	117883574	3	-2.5536	LARGE-LOSS	FOCAL	1	IL13RA1
TCGA.AA.A010.01A	23	118112256	118124382	4	-1.7545	LARGE-LOSS	FOCAL	1	LONRF3
TCGA.AA.A00N.01A	23	118370369	118604822	12	-1.3962	LARGE-LOSS	FOCAL	3	"PGRMC1,SLC25A43,SLC25A5"
TCGA.AA.A010.01A	23	118374235	118604822	11	-1.6286	LARGE-LOSS	FOCAL	3	"PGRMC1,SLC25A43,SLC25A5"
TCGA.AA.A010.01A	23	118709254	118759242	10	-1.6633	LARGE-LOSS	FOCAL	3	"NKRF,SEPT6,UBE2A"
TCGA.AA.3941	23	119562717	119564106	4	-3.5516	LARGE-LOSS	FOCAL	1	LAMP2
TCGA.AA.3850	23	119562782	119564106	3	-7.07885	LARGE-LOSS	FOCAL	1	LAMP2
TCGA.AA.3982	23	119562782	119564880	3	-6.7618	LARGE-LOSS	FOCAL	1	LAMP2
TCGA.AA.3844	23	119562916	119564880	3	-1.5929	LARGE-LOSS	FOCAL	1	LAMP2
TCGA.AA.3956	23	119867355	119868402	3	-6.0114	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	23	121619442	121620430	5	-7.4957	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	23	121619442	121636677	8	-7.44425	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A022	23	124496834	124497071	3	-1.7237	LARGE-LOSS	FOCAL	0	None
TCGA.CA.6717	23	127154707	127210257	3	-6.56	LARGE-LOSS	FOCAL	1	ACTRT1
TCGA.CA.5254	23	127165413	127232325	8	-5.3113	LARGE-LOSS	FOCAL	1	ACTRT1
TCGA.EI.6509	23	127950199	128007275	24	-5.8968	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3982	23	127981936	128031531	24	-2.9602	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	128957615	129047257	10	-1.6588	LARGE-LOSS	FOCAL	2	"UTP14A,ZDHHC9"
TCGA.A6.3808.01A	23	129044963	129171291	18	-1.6474	LARGE-LOSS	FOCAL	2	"BCORL1,UTP14A"
TCGA.AA.A010.01A	23	129053110	129139150	7	-2.722	LARGE-LOSS	FOCAL	1	UTP14A
TCGA.AA.A010.01A	23	129263471	129279402	12	-2.0497	LARGE-LOSS	FOCAL	1	AIFM1
TCGA.AA.A029.01A	23	129269972	129272520	5	-4.5984	LARGE-LOSS	FOCAL	1	AIFM1
TCGA.AA.A00N.01A	23	130212632	130222561	11	-1.5581	LARGE-LOSS	FOCAL	1	ARHGAP36
TCGA.AG.3909.01A	23	130215613	130222561	10	-1.4395	LARGE-LOSS	FOCAL	1	ARHGAP36
TCGA.AA.3984	23	132152620	132155596	3	-3.9765	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	134481013	134494107	5	-1.5968	LARGE-LOSS	FOCAL	1	ZNF449
TCGA.AA.3941	23	134603385	134604030	3	-4.599	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	134654891	134685902	7	-2.2589	LARGE-LOSS	FOCAL	1	DDX26B
TCGA.AA.A010.01A	23	135302884	135390910	15	-2.2084	LARGE-LOSS	FOCAL	2	"ADGRG4,MAP7D3"
TCGA.AA.A00N.01A	23	135570233	135593660	13	-1.3546	LARGE-LOSS	FOCAL	2	"BRS3,HTATSF1"
TCGA.AA.A010.01A	23	135570233	135593660	13	-3.2977	LARGE-LOSS	FOCAL	2	"BRS3,HTATSF1"
TCGA.A6.3808.01A	23	135954382	136659233	12	-2.1315	LARGE-LOSS	FOCAL	3	"GPR101,RBMX,ZIC3"
TCGA.AG.3909.01A	23	136112255	136652033	4	-1.853	LARGE-LOSS	FOCAL	2	"GPR101,ZIC3"
TCGA.AA.A010.01A	23	139006272	139587553	7	-2.4091	LARGE-LOSS	FOCAL	3	"CXorf66,LOC389895,SOX3"
TCGA.AA.3844	23	140479842	140482060	4	-1.4097	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3844	23	141716895	141732434	3	-4.9145	LARGE-LOSS	FOCAL	0	None
TCGA.CA.5254	23	142013824	142063859	13	-1.6126	LARGE-LOSS	FOCAL	0	None
TCGA.CA.5254	23	142065364	142726003	232	-2.9931	LARGE-LOSS	FOCAL	3	"SLITRK4,SPANXN3,SPANXN4"
TCGA.AA.3941	23	142445774	142456094	15	-3.7749	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	23	143877892	143945148	19	-4.56425	LARGE-LOSS	FOCAL	0	None
TCGA.5M.AAT4	23	144572812	144575242	3	-2.9949	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	23	144690590	144692738	5	-7.16505	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	144903893	144910349	4	-1.4932	LARGE-LOSS	FOCAL	2	"SLITRK2,TMEM257"
TCGA.AA.3850	23	145587413	145599584	13	-4.49125	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3968	23	145592957	145599584	3	-1.39	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	146993625	147014827	8	-3.0704	LARGE-LOSS	FOCAL	1	FMR1
TCGA.A6.3808.01A	23	148584683	149101793	19	-1.9345	LARGE-LOSS	FOCAL	10	"CXorf40A,CXorf40B,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,TMEM185A"
TCGA.CA.5254	23	148643709	148686061	3	-3.1256	LARGE-LOSS	FOCAL	5	"HSFX1,HSFX2,MAGEA9,MAGEA9B,TMEM185A"
TCGA.F5.6811.01A	23	148660542	148676533	3	-1.3608	LARGE-LOSS	FOCAL	4	"HSFX1,HSFX2,MAGEA9,MAGEA9B"
TCGA.AA.3850	23	149159741	149234219	14	-2.19885	LARGE-LOSS	FOCAL	0	None
TCGA.AG.3612	23	149478039	149517396	15	-3.825	LARGE-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	149831894	149905050	14	-2.1063	LARGE-LOSS	FOCAL	2	"MTM1,MTMR1"
TCGA.AA.A010.01A	23	150154177	150156200	4	-3.8769	LARGE-LOSS	FOCAL	1	HMGB3
TCGA.AA.A00N.01A	23	150154177	150780083	14	-1.3706	LARGE-LOSS	FOCAL	4	"GPR50,HMGB3,PASD1,VMA21"
TCGA.AA.A010.01A	23	150345156	150832544	17	-1.4778	LARGE-LOSS	FOCAL	3	"GPR50,PASD1,VMA21"
TCGA.AA.A010.01A	23	150839481	150890346	13	-2.5699	LARGE-LOSS	FOCAL	3	"FATE1,PASD1,PRRG3"
TCGA.NH.A8F7	23	150877543	150878211	3	-1.6499	LARGE-LOSS	FOCAL	0	None
TCGA.CM.6169	23	150877952	150878656	3	-3.5896	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3850	23	151222712	151248822	9	-4.36605	LARGE-LOSS	FOCAL	0	None
TCGA.AA.3530	23	151388991	151391629	4	-4.3542	LARGE-LOSS	FOCAL	1	GABRA3
TCGA.AA.A00N.01A	23	151808797	151813934	2	-1.8122	LARGE-LOSS	FOCAL	1	GABRQ
TCGA.A6.3808.01A	23	151869324	152014822	14	-1.9218	LARGE-LOSS	FOCAL	9	"CETN2,CSAG1,CSAG3,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,NSDHL"
TCGA.AA.A00N.01A	23	151996329	151998099	4	-1.8609	LARGE-LOSS	FOCAL	1	CETN2
TCGA.AA.A010.01A	23	152082953	152100167	11	-1.7564	LARGE-LOSS	FOCAL	1	ZNF185
TCGA.A6.3808.01A	23	152082953	152113780	16	-1.6804	LARGE-LOSS	FOCAL	1	ZNF185
TCGA.AA.A010.01A	23	152225364	152773668	33	-2.502	LARGE-LOSS	FOCAL	8	"BGN,HAUS7,MAGEA1,PNMA3,PNMA6A,TREX2,ZFP92,ZNF275"
TCGA.AA.A010.01A	23	152801669	152815461	9	-1.5768	LARGE-LOSS	FOCAL	1	ATP2B3
TCGA.AA.A010.01A	23	152845409	152980965	29	-3.08	LARGE-LOSS	FOCAL	6	"ATP2B3,BCAP31,DUSP9,FAM58A,PNCK,SLC6A8"
TCGA.A6.3808.01A	23	152955781	153055973	62	-2.0419	LARGE-LOSS	FOCAL	6	"ABCD1,BCAP31,IDH3G,PLXNB3,SLC6A8,SRPK3"
TCGA.AA.A00N.01A	23	152967412	152988560	6	-1.5065	LARGE-LOSS	FOCAL	1	BCAP31
TCGA.AA.A010.01A	23	152986276	153008404	11	-1.483	LARGE-LOSS	FOCAL	2	"ABCD1,BCAP31"
TCGA.G4.6322	23	152995218	153052648	11	-4.492	LARGE-LOSS	FOCAL	4	"ABCD1,IDH3G,PLXNB3,SRPK3"
TCGA.AA.A010.01A	23	153030915	153040423	15	-2.3153	LARGE-LOSS	FOCAL	1	PLXNB3
TCGA.AA.A010.01A	23	153040659	153055973	24	-2.7419	LARGE-LOSS	FOCAL	3	"IDH3G,PLXNB3,SRPK3"
TCGA.AA.A010.01A	23	153059653	153141152	34	-1.9454	LARGE-LOSS	FOCAL	4	"IDH3G,L1CAM,PDZD4,SSR4"
TCGA.CK.4952.01A	23	153145808	153149164	2	-5.0374	LARGE-LOSS	FOCAL	1	L1CAM
TCGA.AA.A010.01A	23	153146049	153153899	5	-2.8805	LARGE-LOSS	FOCAL	1	L1CAM
TCGA.AA.A010.01A	23	153170512	153179190	12	-1.9543	LARGE-LOSS	FOCAL	2	"ARHGAP4,AVPR2"
TCGA.AA.A010.01A	23	153184289	153191522	5	-2.3894	LARGE-LOSS	FOCAL	1	ARHGAP4
TCGA.AA.A010.01A	23	153195393	153199781	6	-3.2048	LARGE-LOSS	FOCAL	1	NAA10
TCGA.AA.A00O.01A	23	153199349	153199781	2	-5.9897	LARGE-LOSS	FOCAL	1	NAA10
TCGA.AA.A010.01A	23	153200698	153225216	23	-2.3018	LARGE-LOSS	FOCAL	2	"HCFC1,RENBP"
TCGA.A6.3808.01A	23	153205514	153216764	10	-2.5418	LARGE-LOSS	FOCAL	2	"HCFC1,RENBP"
TCGA.AA.A010.01A	23	153226946	153357623	23	-2.7734	LARGE-LOSS	FOCAL	4	"HCFC1,IRAK1,MECP2,TMEM187"
TCGA.AA.A010.01A	23	153539155	153553630	6	-1.9746	LARGE-LOSS	FOCAL	1	TKTL1
TCGA.AA.A010.01A	23	153555646	153657387	51	-2.849	LARGE-LOSS	FOCAL	7	"ATP6AP1,DNASE1L1,EMD,FLNA,RPL10,TAZ,TKTL1"
TCGA.AA.A024.01A	23	153587361	153589708	3	-2.0076	LARGE-LOSS	FOCAL	1	FLNA
TCGA.AA.A01K.01A	23	153592371	153593486	3	-5.8102	LARGE-LOSS	FOCAL	1	FLNA
TCGA.AA.A02F.01A	23	153592371	153633723	15	-2.7179	LARGE-LOSS	FOCAL	4	"DNASE1L1,EMD,FLNA,RPL10"
TCGA.AA.A010.01A	23	153660116	153677508	22	-3.8037	LARGE-LOSS	FOCAL	3	"ATP6AP1,FAM50A,GDI1"
TCGA.AA.A010.01A	23	153677966	153718192	28	-3.1709	LARGE-LOSS	FOCAL	5	"FAM50A,LAGE3,PLXNA3,SLC10A3,UBL4A"
TCGA.AA.A010.01A	23	153735133	153792117	19	-1.8025	LARGE-LOSS	FOCAL	3	"FAM3A,G6PD,IKBKG"
TCGA.AA.A010.01A	23	153993116	154001387	10	-2.1691	LARGE-LOSS	FOCAL	1	DKC1
TCGA.AA.A00N.01A	23	153993116	154005010	14	-2.1633	LARGE-LOSS	FOCAL	1	DKC1
TCGA.AA.A02E.01A	23	153995214	153995499	2	-4.715	LARGE-LOSS	FOCAL	1	DKC1
TCGA.AG.3909.01A	23	153995499	154009837	12	-1.8593	LARGE-LOSS	FOCAL	2	"DKC1,MPP1"
TCGA.AA.A010.01A	23	154002835	154027992	16	-1.5374	LARGE-LOSS	FOCAL	2	"DKC1,MPP1"
TCGA.AA.A00N.01A	23	154007400	154032951	13	-1.3341	LARGE-LOSS	FOCAL	1	MPP1
TCGA.AA.A010.01A	23	154088685	154133045	13	-3.4746	LARGE-LOSS	FOCAL	7	"F8,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3"
TCGA.AA.A00N.01A	23	154115603	154133045	8	-1.6325	LARGE-LOSS	FOCAL	4	"F8,F8A1,F8A2,F8A3"
TCGA.AA.A010.01A	23	154274724	154279918	3	-2.3235	LARGE-LOSS	FOCAL	1	FUNDC2
TCGA.AA.A010.01A	23	154282821	154319035	11	-3.117	LARGE-LOSS	FOCAL	4	"BRCC3,CMC4,FUNDC2,MTCP1"
TCGA.AG.3909.01A	23	154448408	154528046	11	-1.5613	LARGE-LOSS	FOCAL	3	"CLIC2,RAB39B,VBP1"
TCGA.AA.A010.01A	23	155227341	155254944	14	-2.6193	LARGE-LOSS	FOCAL	1	IL9R
TCGA.CK.5914.01A	24	2654981	5449728	23	-3.048	LARGE-LOSS	FOCAL	5	"PCDH11Y,RPS4Y1,SRY,TGIF2LY,ZFY"
TCGA.AG.4009.01A	24	2654981	6938744	35	-1.9166	LARGE-LOSS	FOCAL	8	"AMELY,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TSPY2,ZFY"
TCGA.AG.A02G.01A	24	2821916	6959424	35	-2.1755	LARGE-LOSS	FOCAL	6	"AMELY,PCDH11Y,TBL1Y,TGIF2LY,TSPY2,ZFY"
TCGA.A6.3808.01A	24	2843501	6115338	13	-1.5976	LARGE-LOSS	FOCAL	4	"PCDH11Y,TGIF2LY,TSPY2,ZFY"
TCGA.AG.A01J.01A	24	5605281	5605281	1	-1.4827	LARGE-LOSS	FOCAL	1	PCDH11Y
TCGA.AG.4009.01A	24	6939552	14518553	14	-1.377	LARGE-LOSS	FOCAL	6	"TBL1Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8"
TCGA.CK.5914.01A	24	15361648	15435413	9	-3.4921	LARGE-LOSS	FOCAL	1	UTY
TCGA.CK.5914.01A	24	15436434	15591366	18	-2.7583	LARGE-LOSS	FOCAL	1	UTY
TCGA.CK.5914.01A	24	15816166	16834945	5	-3.4358	LARGE-LOSS	FOCAL	4	"NLGN4Y,TMSB4Y,VCY,VCY1B"
TCGA.CK.5914.01A	24	16845274	22741437	35	-2.312	LARGE-LOSS	FOCAL	10	"CD24,CDY2A,CDY2B,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,XKRY,XKRY2"
TCGA.AA.A010.01A	24	21154352	21154352	1	-2.3957	LARGE-LOSS	FOCAL	1	CD24
TCGA.AA.A00L.01A	24	21765646	22737678	20	-1.8201	LARGE-LOSS	FOCAL	2	"EIF1AY,KDM5D"
TCGA.CK.5914.01A	24	22744434	22923131	9	-3.3187	LARGE-LOSS	FOCAL	2	"EIF1AY,RPS4Y2"
TCGA.AA.A010.01A	1	69079	970583	51	-1.9518	LARGE-LOSS	NONFOCAL	12	"AGRN,HES4,ISG15,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,SAMD11"
TCGA.A6.3808.01A	1	69079	1159175	107	-1.4162	LARGE-LOSS	NONFOCAL	18	"AGRN,C1orf159,HES4,ISG15,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,RNF223,SAMD11,SDF4,TNFRSF18,TNFRSF4,TTLL10"
TCGA.A6.3808.01A	1	1163841	1670341	190	-2.2095	LARGE-LOSS	NONFOCAL	30	"ACAP3,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf233,CCNL2,CDK11A,CDK11B,CPSF3L,CPTP,DVL1,FAM132A,MIB2,MMP23B,MRPL20,MXRA8,PUSL1,SCNN1D,SDF4,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM88B,UBE2J2,VWA1"
TCGA.AA.A010.01A	1	1256324	1403781	60	-1.8761	LARGE-LOSS	NONFOCAL	12	"ANKRD65,ATAD3C,AURKAIP1,CCNL2,CPSF3L,CPTP,DVL1,MRPL20,MXRA8,TAS1R3,TMEM88B,VWA1"
TCGA.CA.5254	1	1478152	2269947	63	-1.6478	LARGE-LOSS	NONFOCAL	18	"C1orf233,C1orf86,CALML6,CDK11A,CDK11B,CFAP74,GABRD,GNB1,MIB2,MMP23B,MORN1,NADK,PRKCZ,SKI,SLC35E2,SLC35E2B,SSU72,TMEM52"
TCGA.A6.3808.01A	1	1684361	3699173	309	-1.6256	LARGE-LOSS	NONFOCAL	29	"ACTRT2,ARHGEF16,C1orf86,CALML6,CCDC27,CFAP74,FAM213B,GABRD,GNB1,HES5,LRRC47,MEGF6,MMEL1,MORN1,NADK,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,RER1,SKI,SMIM1,TMEM52,TNFRSF14,TP73,TPRG1L,TTC34,WRAP73"
TCGA.A6.3808.01A	1	12952762	13718381	15	-2.836	LARGE-LOSS	NONFOCAL	19	"HNRNPCL2,LOC101929983,LOC391003,LOC400736,LOC645382,PRAMEF10,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9"
TCGA.A6.3808.01A	1	120539628	144619985	21	-2.4196	LARGE-LOSS	NONFOCAL	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.A6.3808.01A	1	147416059	149859092	21	-1.8524	LARGE-LOSS	NONFOCAL	23	"FCGR1A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F"
TCGA.A6.3808.01A	2	131221329	132919145	72	-1.7581	LARGE-LOSS	NONFOCAL	16	"AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC74A,CFC1,CFC1B,FAM168B,GPR148,MZT2A,PLEKHB2,POTEE,POTEI,POTEJ,TUBA3D,WTH3DI"
TCGA.A6.3808.01A	2	240957869	241679418	95	-1.3986	LARGE-LOSS	NONFOCAL	15	"ANKMY1,AQP12A,AQP12B,CAPN10,DUSP28,GPC1,GPR35,KIF1A,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PRR21,RNPEPL1"
TCGA.A6.3808.01A	3	50145444	50418397	106	-1.5249	LARGE-LOSS	NONFOCAL	19	"CACNA2D2,CYB561D2,GNAI2,GNAT1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,NAT6,NPRL2,RASSF1,RBM5,SEMA3B,SEMA3F,SLC38A3,TMEM115,TUSC2,ZMYND10"
TCGA.A6.3808.01A	4	53303	1941334	267	-1.3432	LARGE-LOSS	NONFOCAL	32	"ATP5I,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,GAK,IDUA,LETM1,MAEA,MFSD7,MYL5,NKX1-1,PCGF3,PDE6B,PIGG,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,WHSC1,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A02F.01A	4	57244312	57871363	61	-1.4658	LARGE-LOSS	NONFOCAL	11	"AASDH,ARL9,HOPX,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.CM.5348	4	185139799	190921708	1918	-1.3556	LARGE-LOSS	NONFOCAL	27	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,CYP4V2,F11,FAM149A,FAT1,FRG1,HELT,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AZ.4684.01A	5	68396582	68804941	87	-1.3453	LARGE-LOSS	NONFOCAL	11	"AK6,CCDC125,CCNB1,CDK7,CENPH,MARVELD2,MRPS36,OCLN,RAD17,SLC30A5,TAF9"
TCGA.A6.3808.01A	5	68667275	70892063	101	-2.0515	LARGE-LOSS	NONFOCAL	13	"BDP1,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MCCC2,NAIP,OCLN,RAD17,SERF1A,SERF1B,SMN1,SMN2"
TCGA.DM.A288	5	98490940	109044557	2743	-4.3127	LARGE-LOSS	NONFOCAL	14	"C5orf30,EFNA5,FAM174A,FBXL17,FER,GIN1,MAN2A1,NUDT12,PAM,PJA2,PPIP5K2,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.AA.A00N.01A	5	140165824	140362013	52	-1.4402	LARGE-LOSS	NONFOCAL	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2"
TCGA.A6.3808.01A	5	140166494	140255411	41	-2.2093	LARGE-LOSS	NONFOCAL	12	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.AG.3909.01A	5	140237299	140346361	16	-1.5356	LARGE-LOSS	NONFOCAL	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2"
TCGA.AG.A01N.01A	5	140249034	140249637	3	-3.7089	LARGE-LOSS	NONFOCAL	11	"PCDHA1,PCDHA10,PCDHA11,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.AA.3982	5	140369389	140370010	3	-2.6633	LARGE-LOSS	NONFOCAL	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2"
TCGA.AA.A00N.01A	5	140474338	140803155	99	-1.7261	LARGE-LOSS	NONFOCAL	35	"PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,SLC25A2,TAF7"
TCGA.AG.3909.01A	5	140474338	140810287	97	-2.0091	LARGE-LOSS	NONFOCAL	36	"PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,SLC25A2,TAF7"
TCGA.A6.3808.01A	5	140743866	140810287	23	-2.1982	LARGE-LOSS	NONFOCAL	19	"PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7"
TCGA.AA.A01D.01A	5	140792722	140794563	2	-6.3151	LARGE-LOSS	NONFOCAL	16	"PCDHGA1,PCDHGA10,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6"
TCGA.AA.3967.01A	6	82901454	86235802	196	-1.329	LARGE-LOSS	NONFOCAL	16	"CEP162,CYB5R4,DOPEY1,IBTK,ME1,MRAP2,NT5E,PGM3,PRSS35,RIPPLY2,RWDD2A,SNAP91,SNX14,TBX18,TPBG,UBE3D"
TCGA.A6.5665	7	44407	2686058	442	-1.5496	LARGE-LOSS	NONFOCAL	32	"ADAP1,BRAT1,C7orf50,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.A010.01A	7	27134037	27238796	24	-1.6085	LARGE-LOSS	NONFOCAL	11	"HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.AA.A01T	8	164983	30761617	14953	-1.442	LARGE-LOSS	NONFOCAL	189	Too-Many
TCGA.A6.5660	8	164983	37667017	16871	-1.4456	LARGE-LOSS	NONFOCAL	203	Too-Many
TCGA.A6.2671	8	772585	31576014	14960	-1.4502	LARGE-LOSS	NONFOCAL	188	Too-Many
TCGA.AZ.6608	8	2247093	36181074	15571	-1.667	LARGE-LOSS	NONFOCAL	189	Too-Many
TCGA.AG.3611.01A	8	6360575	7308593	27	-1.4033	LARGE-LOSS	NONFOCAL	18	"AGPAT5,ANGPT2,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB4B,MCPH1,SPAG11B,USP17L1,USP17L4,XKR5,ZNF705G"
TCGA.DM.A28M.01A	8	7346907	7706164	10	-1.5147	LARGE-LOSS	NONFOCAL	12	"DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,PRR23D1,PRR23D2,SPAG11A,SPAG11B"
TCGA.AG.3885	8	12473557	33153500	9010	-1.3261	LARGE-LOSS	NONFOCAL	118	Too-Many
TCGA.AA.3680	8	20383876	25709709	2043	-1.3501	LARGE-LOSS	NONFOCAL	48	"ADAM28,ADAM7,ADAMDEC1,BIN3,BMP1,C8orf58,CCAR2,CDCA2,CHMP7,DMTN,DOCK5,DOK2,EBF2,EGR3,ENTPD4,FAM160B2,FGF17,GFRA2,GNRH1,HR,KCTD9,LGI3,LOXL2,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NUDT18,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,R3HCC1,REEP4,RHOBTB2,SFTPC,SLC25A37,SLC39A14,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,XPO7"
TCGA.AG.3592	8	23167608	36447400	4520	-1.3233	LARGE-LOSS	NONFOCAL	63	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,LOXL2,MAK16,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SLC25A37,SMIM18,STC1,STMN4,TEX15,TRIM35,TTI2,UBXN8,UNC5D,WRN,ZNF395"
TCGA.A6.3808.01A	8	144620136	145755769	294	-1.3767	LARGE-LOSS	NONFOCAL	53	"ADCK5,ARHGAP39,BOP1,C8orf82,CCDC166,CPSF1,CYC1,CYHR1,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TSTA3,VPS28,ZC3H3,ZNF623,ZNF707"
TCGA.AA.A010.01A	8	145655736	145780889	68	-1.9883	LARGE-LOSS	NONFOCAL	12	"ARHGAP39,C8orf82,CYHR1,FOXH1,GPT,KIFC2,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,TONSL"
TCGA.DY.A1DF	9	192128	7264557	4037	-1.4475	LARGE-LOSS	NONFOCAL	36	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TPD52L3,UHRF2,VLDLR"
TCGA.DY.A1DF	9	8972797	22548450	6028	-1.413	LARGE-LOSS	NONFOCAL	49	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,FOCAD,FREM1,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,LURAP1L,MLLT3,MPDZ,MTAP,NFIB,PLIN2,PSIP1,PTPRD,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TTC39B,TYRP1,ZDHHC21"
TCGA.A6.3808.01A	9	39086646	70919346	61	-2.308	LARGE-LOSS	NONFOCAL	19	"ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,ZNF658"
TCGA.A6.3808.01A	9	139975111	140637841	205	-1.4386	LARGE-LOSS	NONFOCAL	31	"ANAPC2,ARRDC1,C9orf173,CYSRT1,DPH7,DPP7,EHMT1,ENTPD8,EXD3,FAM166A,GRIN1,LRRC26,MAN1B1,MRPL41,NDOR1,NELFB,NOXA1,NRARP,NSMF,PNPLA7,RNF208,RNF224,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TUBB4B,UAP1L1,ZMYND19"
TCGA.DY.A1DF	10	71145485	71985732	426	-1.714	LARGE-LOSS	NONFOCAL	11	"AIFM2,C10orf35,COL13A1,H2AFY2,HK1,NEUROG3,PPA1,SAR1A,TACR2,TSPAN15,TYSND1"
TCGA.AM.5820	10	89070744	90600426	485	-2.8765	LARGE-LOSS	NONFOCAL	12	"ANKRD22,ATAD1,KLLN,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,PAPSS2,PTEN,RNLS"
TCGA.AA.3952	10	89485394	90904001	530	-2.1752	LARGE-LOSS	NONFOCAL	14	"ACTA2,ANKRD22,ATAD1,FAS,KLLN,LIPF,LIPJ,LIPK,LIPM,LIPN,PAPSS2,PTEN,RNLS,STAMBPL1"
TCGA.AA.A02F.01A	10	89574173	90676410	66	-2.6897	LARGE-LOSS	NONFOCAL	11	"ANKRD22,ATAD1,KLLN,LIPF,LIPJ,LIPK,LIPM,LIPN,PTEN,RNLS,STAMBPL1"
TCGA.DM.A288	10	134320912	135434550	220	-1.5337	LARGE-LOSS	NONFOCAL	19	"ADAM8,ADGRA1,CALY,CFAP46,CYP2E1,ECHS1,FUOM,INPP5A,KNDC1,MTG1,NKX6-2,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A010.01A	11	180187	419534	91	-2.0876	LARGE-LOSS	NONFOCAL	17	"ANO9,ATHL1,B4GALNT4,BET1L,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,ODF3,PKP3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIGIRR,SIRT3"
TCGA.AD.6889	11	206766	606293	79	-1.3422	LARGE-LOSS	NONFOCAL	21	"ANO9,ATHL1,B4GALNT4,BET1L,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,LMNTD2,LRRC56,NLRP6,PHRF1,PKP3,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,SIGIRR,SIRT3"
TCGA.A6.3808.01A	11	702906	1036529	129	-1.486	LARGE-LOSS	NONFOCAL	17	"AP2A2,CD151,CEND1,CHID1,CRACR2B,EPS8L2,MUC6,PANO1,PDDC1,PIDD1,PNPLA2,POLR2L,RPLP2,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AA.3941	11	51267020	56242353	356	-1.443	LARGE-LOSS	NONFOCAL	41	"OR10AG1,OR4A15,OR4A16,OR4A5,OR4C11,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M3,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,TRIM48,TRIM51"
TCGA.AA.3941	11	87221677	90572247	988	-1.3745	LARGE-LOSS	NONFOCAL	16	"CHORDC1,CTSC,FOLH1B,GRM5,NAALAD2,NOX4,RAB38,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AA.3941	11	104050258	106781076	819	-1.4028	LARGE-LOSS	NONFOCAL	12	"AASDHPPT,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,GRIA4,GUCY1A2,KBTBD3,MSANTD4"
TCGA.DY.A1DG	12	192219	5535675	2154	-1.546	LARGE-LOSS	NONFOCAL	41	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.DY.A1DG	12	9822386	27451599	6104	-1.4167	LARGE-LOSS	NONFOCAL	130	Too-Many
TCGA.DY.A1DF	12	121867491	123718878	231	-1.3601	LARGE-LOSS	NONFOCAL	33	"ABCB9,ARL6IP4,B3GNT4,BCL7A,C12orf65,CCDC62,CLIP1,DENR,DIABLO,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KDM2B,KNTC1,LRRC43,MLXIP,MORN3,MPHOSPH9,OGFOD2,ORAI1,PITPNM2,PSMD9,RHOF,RSRC2,SETD1B,TMEM120B,VPS33A,VPS37B,WDR66,ZCCHC8"
TCGA.CK.5915	13	35195625	49409342	5184	-1.8668	LARGE-LOSS	NONFOCAL	73	"AKAP11,ALG5,CCDC122,CCDC169,CCDC169-SOHLH2,CCNA1,COG3,COG6,CPB2,CSNK1A1L,CYSLTR2,DCLK1,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,EXOSC8,FAM216B,FOXO1,FREM2,GPALPP1,GTF2F2,HTR2A,ITM2B,KBTBD6,KBTBD7,KCTD4,KIAA0226L,LACC1,LCP1,LHFP,LPAR6,LRCH1,LRRC63,MAB21L1,MED4,MRPS31,MTRF1,NAA16,NBEA,NHLRC3,NUDT15,NUFIP1,POSTN,PROSER1,RB1,RCBTB2,RFXAP,RGCC,SERP2,SERTM1,SIAH3,SLC25A15,SLC25A30,SMAD9,SMIM2,SOHLH2,SPERT,SPG20,STOML3,SUCLA2,SUPT20H,TNFSF11,TPT1,TRPC4,TSC22D1,UFM1,VWA8,WBP4,ZC3H13"
TCGA.AG.3605.01A	14	24044867	24657381	5	-1.4573	LARGE-LOSS	NONFOCAL	18	"CPNE6,DCAF11,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,IPO4,IRF9,JPH4,LRRC16B,NRL,PCK2,PSME1,PSME2,REC8,RNF31"
TCGA.A6.3808.01A	14	105267565	106054399	157	-1.8091	LARGE-LOSS	NONFOCAL	18	"AHNAK2,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,PLD4,TEX22,TMEM121,ZBTB42"
TCGA.AA.3488	15	20143650	27776042	1530	-1.457	LARGE-LOSS	NONFOCAL	24	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.A6.A56B	15	22765682	29725662	1976	-1.3566	LARGE-LOSS	NONFOCAL	23	"APBA2,ATP10A,CYFIP1,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.CM.5864	15	38104490	44058633	1608	-1.4914	LARGE-LOSS	NONFOCAL	90	"ADAL,ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CAPN3,CASC5,CATSPER2,CCNDBP1,CDAN1,CHAC1,CHP1,CHST14,CKMT1A,CKMT1B,DISP2,DLL4,DNAJC17,EHD4,EIF2AK4,EPB42,EXD1,FAM98B,FSIP1,GANC,GCHFR,GPR176,HAUS2,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LCMT2,LRRC57,LTK,MAP1A,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,PAK6,PDIA3,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPIP5K1,PPP1R14D,RAD51,RASGRP1,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SNAP23,SPINT1,SPRED1,SPTBN5,SRP14,STARD9,STRC,TGM5,TGM7,THBS1,TMCO5A,TMEM62,TMEM87A,TP53BP1,TTBK2,TUBGCP4,TYRO3,UBR1,VPS18,VPS39,ZFYVE19,ZNF106,ZSCAN29"
TCGA.AA.A010.01A	16	64374	279183	62	-1.4891	LARGE-LOSS	NONFOCAL	11	"HBA1,HBA2,HBM,HBQ1,HBZ,LUC7L,MPG,NPRL3,POLR3K,RHBDF1,SNRNP25"
TCGA.A6.5665	16	94807	1849942	269	-1.732	LARGE-LOSS	NONFOCAL	76	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,METRN,MPG,MRPL28,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NPRL3,NUBP2,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.A6.3808.01A	16	417352	1400761	280	-1.7645	LARGE-LOSS	NONFOCAL	42	"BAIAP3,C16orf13,C1QTNF8,CACNA1H,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,JMJD8,LMF1,METRN,MRPL28,MSLN,NARFL,NHLRC4,NME4,PIGQ,PRR25,PRR35,RAB11FIP3,RAB40C,RHBDL1,RHOT2,RPUSD1,SOX8,SSTR5,STUB1,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,WDR24,WDR90,WFIKKN1"
TCGA.AA.A010.01A	16	731114	848933	77	-2.1387	LARGE-LOSS	NONFOCAL	13	"CCDC78,CHTF18,FAM173A,FBXL16,GNG13,HAGHL,JMJD8,METRN,MSLN,NARFL,RPUSD1,STUB1,WDR24"
TCGA.A6.3808.01A	16	1812623	2286776	218	-1.4824	LARGE-LOSS	NONFOCAL	34	"BRICD5,CASKIN1,DNASE1L2,E4F1,EME2,FAHD1,GFER,HAGH,HS3ST6,IGFALS,MAPK8IP3,MEIOB,MLST8,MRPS34,MSRB1,NDUFB10,NME3,NOXO1,NPW,NTHL1,NUBP2,PGP,PKD1,RAB26,RNF151,RPL3L,RPS2,SLC9A3R2,SPSB3,SYNGR3,TBL3,TRAF7,TSC2,ZNF598"
TCGA.AG.3909.01A	17	4805216	4907804	55	-1.4666	LARGE-LOSS	NONFOCAL	11	"C17orf107,CAMTA2,CHRNE,ENO3,GP1BA,INCA1,KIF1C,PFN1,RNF167,SLC25A11,SPAG7"
TCGA.AA.3662	17	6289618	7701203	377	-1.5994	LARGE-LOSS	NONFOCAL	64	"ACADVL,ACAP1,AIPL1,ALOX12,ASGR1,ASGR2,ATP1B2,BCL6B,C17orf100,C17orf49,C17orf74,CD68,CHRNB1,CLDN7,CLEC10A,CTDNEP1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FAM64A,FBXO39,FGF11,FXR2,GABARAP,GPS2,KCTD11,KIAA0753,MED31,MPDU1,NEURL4,NLGN2,PHF23,PITPNM3,PLSCR3,POLR2A,RNASEK,SAT2,SENP3,SHBG,SLC13A5,SLC16A11,SLC16A13,SLC2A4,SLC35G6,SOX15,SPEM1,TEKT1,TMEM102,TMEM256,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TXNDC17,WRAP53,XAF1,YBX2,ZBTB4"
TCGA.AG.3909.01A	17	7123735	7228066	63	-1.7084	LARGE-LOSS	NONFOCAL	12	"ACADVL,CLDN7,CTDNEP1,DVL2,EIF5A,ELP5,GABARAP,GPS2,NEURL4,PHF23,SLC2A4,YBX2"
TCGA.A6.A56B	17	7183361	8094019	171	-1.4049	LARGE-LOSS	NONFOCAL	53	"ACAP1,ALOX12B,ALOX15B,ALOXE3,ATP1B2,C17orf59,C17orf74,CD68,CHD3,CHRNB1,CNTROB,CYB5D1,DNAH2,EFNB3,EIF4A1,EIF5A,FGF11,FXR2,GPS2,GUCY2D,HES7,KCNAB3,KCTD11,KDM6B,MPDU1,NAA38,NEURL4,NLGN2,PER1,PLSCR3,POLR2A,SAT2,SENP3,SHBG,SLC2A4,SLC35G6,SOX15,SPEM1,TMEM102,TMEM107,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,VAMP2,WRAP53,YBX2,ZBTB4"
TCGA.G4.6295	17	15569107	16414786	125	-2.9626	LARGE-LOSS	NONFOCAL	12	"ADORA2B,CENPV,LRRC75A,NCOR1,PIGL,TBC1D26,TRIM16,TRPV2,TTC19,UBB,ZNF286A,ZSWIM7"
TCGA.AA.3549	17	19626624	25313689	318	-1.3744	LARGE-LOSS	NONFOCAL	16	"AKAP10,ALDH3A1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,MTRNR2L1,NATD1,SPECC1,TMEM11,ULK2,USP22"
TCGA.DM.A288	17	31613493	36162391	1609	-1.4269	LARGE-LOSS	NONFOCAL	65	"AATF,ACACA,AP2B1,ASIC2,C17orf102,C17orf50,C17orf78,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCL7,CCL8,CCT6B,DDX52,DHRS11,DUSP14,FNDC8,GAS2L2,GGNBP2,HEATR9,HNF1B,LHX1,LIG3,LOC101060321,LYZL6,MMP28,MRM1,MYO19,NLE1,PEX12,PIGW,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SYNRG,TADA2A,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,TMEM132E,UNC45B,ZNF830,ZNHIT3"
TCGA.AA.A010.01A	17	79671252	79916755	62	-2.4093	LARGE-LOSS	NONFOCAL	16	"ALYREF,ANAPC11,ARHGDIA,FAM195B,GCGR,MAFG,MRPL12,MYADML2,NOTUM,NPB,P4HB,PCYT2,PPP1R27,PYCR1,SIRT7,SLC25A10"
TCGA.AA.3666	18	5003536	15215870	3800	-1.4871	LARGE-LOSS	NONFOCAL	46	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CHMP1B,CIDEA,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LRRC30,MC2R,MC5R,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TMEM200C,TUBB6,TWSG1,TXNDC2,VAPA,ZBTB14,ZNF519"
TCGA.DY.A1DG	18	21103908	41626890	6365	-1.4419	LARGE-LOSS	NONFOCAL	56	"ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABYR,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PIK3C3,PSMA8,RIT2,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,SYT4,TAF4B,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.3666	18	22916790	70344449	15901	-1.429	LARGE-LOSS	NONFOCAL	152	Too-Many
TCGA.AG.3591	18	31187705	78015056	16547	-1.7428	LARGE-LOSS	NONFOCAL	155	Too-Many
TCGA.AA.3662	18	32386100	71657232	13709	-1.3356	LARGE-LOSS	NONFOCAL	126	Too-Many
TCGA.AG.3725	18	32992604	78015056	16074	-1.3755	LARGE-LOSS	NONFOCAL	147	Too-Many
TCGA.AG.3885	18	36719750	78015056	14874	-1.3583	LARGE-LOSS	NONFOCAL	136	Too-Many
TCGA.CA.5256	18	43558587	45635963	647	-1.3633	LARGE-LOSS	NONFOCAL	18	"ATP5A1,C18orf25,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PSTPIP2,RNF165,SKOR2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.DY.A1DG	18	47181667	54612505	2497	-1.5067	LARGE-LOSS	NONFOCAL	23	"ACAA2,C18orf54,CCDC68,CFAP53,CXXC1,DCC,DYNAP,ELAC1,MAPK4,MBD1,MBD2,ME2,MEX3C,MRO,MYO5B,POLI,RAB27B,SKA1,SMAD4,STARD6,TCF4,TXNL1,WDR7"
TCGA.AA.3549	18	48118359	53065341	1645	-2.8198	LARGE-LOSS	NONFOCAL	15	"C18orf54,CCDC68,DCC,DYNAP,ELAC1,MAPK4,MBD2,ME2,MEX3C,MRO,POLI,RAB27B,SMAD4,STARD6,TCF4"
TCGA.DY.A1DG	18	54632501	78015056	9000	-1.4791	LARGE-LOSS	NONFOCAL	81	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3844	18	62134301	71425621	3430	-1.3936	LARGE-LOSS	NONFOCAL	12	"CBLN2,CCDC102B,CD226,CDH19,CDH7,DOK6,DSEL,GTSCR1,NETO1,RTTN,SOCS6,TMX3"
TCGA.AA.3560	18	73021080	78015056	1988	-1.3839	LARGE-LOSS	NONFOCAL	17	"ADNP2,ATP9B,C18orf65,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TXNL4A,ZNF236,ZNF516"
TCGA.AF.3911	18	74308610	77861994	1266	-1.4063	LARGE-LOSS	NONFOCAL	12	"ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PQLC1,RBFA,SALL3,TXNL4A,ZNF236"
TCGA.AA.3666	19	260969	5619325	675	-1.3374	LARGE-LOSS	NONFOCAL	160	Too-Many
TCGA.AA.A010.01A	19	463803	695290	68	-1.9383	LARGE-LOSS	NONFOCAL	12	"BSG,CDC34,FGF22,FSTL3,GZMM,HCN2,MADCAM1,ODF3L2,POLRMT,PRSS57,RNF126,TPGS1"
TCGA.AA.A010.01A	19	797405	1154132	171	-1.6829	LARGE-LOSS	NONFOCAL	19	"ABCA7,ARID3A,AZU1,CFD,CNN2,ELANE,GPX4,GRIN3B,HMHA1,KISS1R,LPPR3,MED16,POLR2E,PRTN3,PTBP1,R3HDM4,SBNO2,TMEM259,WDR18"
TCGA.AA.A010.01A	19	1369222	1599401	79	-1.5914	LARGE-LOSS	NONFOCAL	14	"ADAMTSL5,APC2,C19orf25,DAZAP1,GAMT,MBD3,MEX3D,MUM1,NDUFS7,PCSK4,PLK5,REEP6,RPS15,UQCR11"
TCGA.AA.A010.01A	19	49090467	49225070	46	-1.4303	LARGE-LOSS	NONFOCAL	11	"CA11,DBP,FAM83E,FUT2,MAMSTR,NTN5,RASIP1,RPL18,SPACA4,SPHK2,SULT2B1"
TCGA.AA.A010.01A	19	55866591	56011143	42	-1.8384	LARGE-LOSS	NONFOCAL	11	"FAM71E2,IL11,ISOC2,NAT14,RPL28,SHISA7,SSC5D,TMEM190,TMEM238,UBE2S,ZNF628"
TCGA.DY.A1DG	21	10971565	31384542	6018	-1.3914	LARGE-LOSS	NONFOCAL	36	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.DY.A1DG	21	37054069	48084819	4260	-1.5346	LARGE-LOSS	NONFOCAL	112	Too-Many
TCGA.F5.6810	21	44032711	47721738	1079	-1.3319	LARGE-LOSS	NONFOCAL	60	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PTTG1IP,PWP2,RRP1,RRP1B,SIK1,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBE2G2,WDR4,YBEY"
TCGA.EI.7002	22	44209163	48665560	1919	-1.4424	LARGE-LOSS	NONFOCAL	32	"ARHGAP8,ATXN10,CDPF1,CELSR1,CERK,FAM118A,FBLN1,GRAMD4,GTSE1,KIAA0930,KIAA1644,LDOC1L,NUP50,PARVB,PARVG,PHF21B,PKDREJ,PNPLA3,PNPLA5,PPARA,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SMC1B,SULT4A1,TBC1D22A,TRMU,TTC38,UPK3A,WNT7B"
TCGA.A6.3808.01A	23	299287	2343216	78	-1.7312	LARGE-LOSS	NONFOCAL	11	"AKAP17A,ASMT,ASMTL,CRLF2,CSF2RA,DHRSX,IL3RA,P2RY8,PPP2R3B,SHOX,SLC25A6"
TCGA.AG.A02G.01A	23	2700042	9000961	117	-2.2316	LARGE-LOSS	NONFOCAL	19	"ANOS1,ARSD,ARSE,ARSF,ARSH,FAM9A,FAM9B,GYG2,HDHD1,MXRA5,NLGN4X,PNPLA4,PRKX,STS,VCX,VCX2,VCX3A,VCX3B,XG"
TCGA.A6.3808.01A	23	51638112	53221882	39	-1.5137	LARGE-LOSS	NONFOCAL	17	"FAM156A,FAM156B,GPR173,KDM5C,MAGED1,MAGED4,MAGED4B,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.A6.3808.01A	23	153577165	153718192	97	-1.9798	LARGE-LOSS	NONFOCAL	12	"ATP6AP1,DNASE1L1,EMD,FAM50A,FLNA,GDI1,LAGE3,PLXNA3,RPL10,SLC10A3,TAZ,UBL4A"
TCGA.AZ.4684.01A	24	2654981	14888536	68	-1.413	LARGE-LOSS	NONFOCAL	14	"AMELY,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,ZFY"
TCGA.AG.A014.01A	24	2654981	22942770	179	-2.1445	LARGE-LOSS	NONFOCAL	30	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.3509.01A	24	2654981	25375680	187	-4.0527	LARGE-LOSS	NONFOCAL	46	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.A6.3810.01A	24	2654981	27190045	195	-1.489	LARGE-LOSS	NONFOCAL	48	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY1,CDY1B,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.CK.4952.01A	24	2714981	13028561	51	-5.3265	LARGE-LOSS	NONFOCAL	12	"AMELY,PCDH11Y,RPS4Y1,TBL1Y,TGIF2LY,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,ZFY"
TCGA.CK.5914.01A	24	5605281	15029928	87	-2.4267	LARGE-LOSS	NONFOCAL	11	"AMELY,DDX3Y,PCDH11Y,TBL1Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y"
TCGA.CK.4952.01A	24	13042029	20223480	105	-4.2051	LARGE-LOSS	NONFOCAL	11	"CDY2A,CDY2B,DDX3Y,NLGN4Y,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AG.4009.01A	24	14821358	22942770	129	-1.9478	LARGE-LOSS	NONFOCAL	17	"CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,RPS4Y2,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AZ.4684.01A	24	14903382	25375680	113	-1.3351	LARGE-LOSS	NONFOCAL	33	"BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.CK.4952.01A	24	20225034	25599433	37	-5.0569	LARGE-LOSS	NONFOCAL	24	"BPY2,BPY2B,BPY2C,CD24,DAZ1,DAZ2,DAZ3,DAZ4,EIF1AY,HSFY1,HSFY2,KDM5D,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,XKRY,XKRY2"
TCGA.CK.5914.01A	24	22930652	27190045	7	-2.1314	LARGE-LOSS	NONFOCAL	19	"BPY2,BPY2B,BPY2C,CDY1,CDY1B,DAZ1,DAZ2,DAZ3,DAZ4,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2"
TCGA.AG.A036.01A	1	58977	10631678	1105	-0.1777	NEUTRAL	NA	132	Too-Many
TCGA.AH.6549.01A	1	69079	879056	11	0.1689	NEUTRAL	NA	5	"OR4F16,OR4F29,OR4F3,OR4F5,SAMD11"
TCGA.AA.A01Q.01A	1	69079	892256	22	-0.3392	NEUTRAL	NA	6	"NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,SAMD11"
TCGA.AA.3930.01A	1	69079	989116	49	-0.2889	NEUTRAL	NA	12	"AGRN,HES4,ISG15,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,SAMD11"
TCGA.AG.3909.01A	1	69079	1179284	49	-0.1891	NEUTRAL	NA	20	"AGRN,B3GALT6,C1orf159,FAM132A,HES4,ISG15,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,RNF223,SAMD11,SDF4,TNFRSF18,TNFRSF4,TTLL10"
TCGA.AA.A00Q.01A	1	69079	1203205	60	-0.1848	NEUTRAL	NA	21	"AGRN,B3GALT6,C1orf159,FAM132A,HES4,ISG15,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,RNF223,SAMD11,SDF4,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.AA.A02E.01A	1	69079	1325571	32	-0.0216	NEUTRAL	NA	31	"ACAP3,AGRN,AURKAIP1,B3GALT6,C1orf159,CCNL2,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MXRA8,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,TAS1R3,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.AA.3862.01A	1	69079	1575620	154	-0.312	NEUTRAL	NA	44	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,CCNL2,CDK11B,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MIB2,MMP23B,MRPL20,MXRA8,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,SSU72,TAS1R3,TMEM240,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.AG.3906.01A	1	69079	2452493	180	0.1433	NEUTRAL	NA	61	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,GABRD,GNB1,HES4,ISG15,KLHL17,MIB2,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.AA.A01D.01A	1	69079	3683050	126	-0.3258	NEUTRAL	NA	74	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AG.A008.01A	1	69079	4771911	304	0.2383	NEUTRAL	NA	80	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.DM.A282.01A	1	69079	4834423	647	0.0105	NEUTRAL	NA	80	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.A024.01A	1	69079	6304386	378	0.3401	NEUTRAL	NA	87	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES3,HES4,HES5,ICMT,ISG15,KCNAB2,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NPHP4,OR4F16,OR4F29,OR4F3,OR4F5,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF207,RNF223,RPL22,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.A00L.01A	1	69079	6537552	443	-0.3368	NEUTRAL	NA	93	"ACAP3,ACOT7,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DVL1,ESPN,FAM132A,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES4,HES5,ICMT,ISG15,KCNAB2,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NPHP4,OR4F16,OR4F29,OR4F3,OR4F5,PANK4,PERM1,PEX10,PLCH2,PLEKHG5,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF207,RNF223,RPL22,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF25,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AG.A00C.01A	1	69079	8568624	542	0.1724	NEUTRAL	NA	109	Too-Many
TCGA.CM.4750.01A	1	69079	8601225	961	-0.1538	NEUTRAL	NA	109	Too-Many
TCGA.AA.3939.01A	1	69079	9770465	879	-0.3008	NEUTRAL	NA	119	Too-Many
TCGA.AA.3861.01A	1	69079	11808441	1087	-0.1817	NEUTRAL	NA	148	Too-Many
TCGA.AA.A02J.01A	1	69079	15430482	896	-0.1567	NEUTRAL	NA	195	Too-Many
TCGA.CK.4948.01B	1	69079	16785310	1940	-0.1602	NEUTRAL	NA	226	Too-Many
TCGA.AA.A01I.01A	1	69079	17314594	1268	-0.3417	NEUTRAL	NA	232	Too-Many
TCGA.AG.A01J.01A	1	69079	17682426	1267	-0.1528	NEUTRAL	NA	237	Too-Many
TCGA.AG.A01L.01A	1	69079	17708431	1440	-0.0588	NEUTRAL	NA	238	Too-Many
TCGA.AA.A00F.01A	1	69079	20005382	1665	-0.1428	NEUTRAL	NA	258	Too-Many
TCGA.AA.A004.01A	1	69079	26520241	2007	-0.1703	NEUTRAL	NA	350	Too-Many
TCGA.AA.A00A.01A	1	69079	26527795	2300	-0.362	NEUTRAL	NA	350	Too-Many
TCGA.AA.A01F.01A	1	69079	36915831	3397	-0.2714	NEUTRAL	NA	494	Too-Many
TCGA.AA.A01C.01A	1	69079	38484689	3633	-0.3818	NEUTRAL	NA	514	Too-Many
TCGA.AG.A00Y.01A	1	69079	40030726	3770	-0.21	NEUTRAL	NA	525	Too-Many
TCGA.CM.6165.01A	1	69079	40036859	4752	-0.0754	NEUTRAL	NA	525	Too-Many
TCGA.AG.A02X.01A	1	69079	46498217	4503	0.0636	NEUTRAL	NA	624	Too-Many
TCGA.AG.A015.01A	1	69079	46532551	4416	-0.1371	NEUTRAL	NA	625	Too-Many
TCGA.AA.A02H.01A	1	69079	55272616	4877	-0.4768	NEUTRAL	NA	709	Too-Many
TCGA.AG.A025.01A	1	69079	55512149	5311	-0.1668	NEUTRAL	NA	713	Too-Many
TCGA.AY.A54L.01A	1	69079	77334134	7387	-0.0848	NEUTRAL	NA	792	Too-Many
TCGA.AA.3815.01A	1	69079	86249736	7360	0.0212	NEUTRAL	NA	825	Too-Many
TCGA.AA.3967.01A	1	69079	101487150	7823	0.1548	NEUTRAL	NA	905	Too-Many
TCGA.AG.A014.01A	1	69079	103347189	7304	-0.0542	NEUTRAL	NA	908	Too-Many
TCGA.AG.A02G.01A	1	69079	111145894	7803	-0.4856	NEUTRAL	NA	967	Too-Many
TCGA.AG.A032.01A	1	69079	120935789	8237	-0.4511	NEUTRAL	NA	1052	Too-Many
TCGA.AG.A011.01A	1	69079	186957460	12843	0.1459	NEUTRAL	NA	1602	Too-Many
TCGA.AA.A029.01A	1	69079	249210793	15943	-0.2303	NEUTRAL	NA	2001	Too-Many
TCGA.AA.A02R.01A	1	69079	249210793	15804	-0.0526	NEUTRAL	NA	2001	Too-Many
TCGA.AA.A02W.01A	1	69079	249210793	16232	-0.1898	NEUTRAL	NA	2001	Too-Many
TCGA.CM.4744.01A	1	69079	249213943	18538	-0.0521	NEUTRAL	NA	2001	Too-Many
TCGA.DM.A1D4	1	564620	761731	4	0.3023	NEUTRAL	NA	3	"OR4F16,OR4F29,OR4F3"
TCGA.A6.6653	1	564620	799462	9	-0.261	NEUTRAL	NA	3	"OR4F16,OR4F29,OR4F3"
TCGA.AM.5820	1	564620	888658	10	0.1579	NEUTRAL	NA	5	"NOC2L,OR4F16,OR4F29,OR4F3,SAMD11"
TCGA.AA.3872	1	564620	947033	13	-0.4287	NEUTRAL	NA	9	"HES4,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,SAMD11"
TCGA.AG.3901	1	564620	947033	13	-0.0362	NEUTRAL	NA	9	"HES4,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,SAMD11"
TCGA.AY.A71X	1	564620	949607	14	-0.2777	NEUTRAL	NA	10	"HES4,ISG15,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,SAMD11"
TCGA.D5.5537	1	564620	1242467	39	0.0078	NEUTRAL	NA	22	"ACAP3,AGRN,B3GALT6,C1orf159,FAM132A,HES4,ISG15,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,RNF223,SAMD11,SCNN1D,SDF4,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.DM.A28H	1	564620	1411875	47	0.34	NEUTRAL	NA	36	"ACAP3,AGRN,ANKRD65,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,CCNL2,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MRPL20,MXRA8,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,TAS1R3,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.RU.A8FL	1	564620	1663830	54	0.0296	NEUTRAL	NA	46	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,CCNL2,CDK11A,CDK11B,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MIB2,MMP23B,MRPL20,MXRA8,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.AG.3583	1	564620	1823921	68	-0.0865	NEUTRAL	NA	48	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,CCNL2,CDK11A,CDK11B,CPSF3L,CPTP,DVL1,FAM132A,GNB1,HES4,ISG15,KLHL17,MIB2,MMP23B,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.AA.3856	1	564620	2075067	88	0.1034	NEUTRAL	NA	53	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,GABRD,GNB1,HES4,ISG15,KLHL17,MIB2,MMP23B,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,PRKCZ,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.AH.6644	1	564620	2327814	132	-0.1349	NEUTRAL	NA	57	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,GABRD,GNB1,HES4,ISG15,KLHL17,MIB2,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.AF.2689	1	564620	2418934	142	-0.4602	NEUTRAL	NA	59	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,GABRD,GNB1,HES4,ISG15,KLHL17,MIB2,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PEX10,PLCH2,PLEKHN1,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.A6.5666	1	564620	2553757	159	0.093	NEUTRAL	NA	64	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.CI.6622	1	564620	2553757	160	-0.0193	NEUTRAL	NA	64	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.F4.6806	1	564620	2844253	186	-0.0597	NEUTRAL	NA	65	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTC34,TTLL10,UBE2J2,VWA1"
TCGA.AG.3887	1	564620	3152967	280	-0.1058	NEUTRAL	NA	67	"ACAP3,ACTRT2,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTC34,TTLL10,UBE2J2,VWA1"
TCGA.G4.6310	1	564620	3218922	295	-0.078	NEUTRAL	NA	67	"ACAP3,ACTRT2,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTC34,TTLL10,UBE2J2,VWA1"
TCGA.A6.4107	1	564620	4236981	563	-0.4324	NEUTRAL	NA	78	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.G4.6628	1	564620	4408305	662	-0.0084	NEUTRAL	NA	78	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.3860	1	564620	4417960	668	-0.0198	NEUTRAL	NA	78	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AG.A026	1	564620	4417960	667	-0.2144	NEUTRAL	NA	78	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.F4.6569	1	564620	4658537	845	-0.1225	NEUTRAL	NA	78	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.CM.5349	1	564620	4739424	899	-0.1245	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AG.3612	1	564620	4847593	944	-0.4964	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.NH.A5IV	1	564620	4970121	1011	0.0762	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AG.3727	1	564620	4998384	1041	0.012	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.A6.5662	1	564620	5229408	1165	0.1611	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.F4.6461	1	564620	5234334	1164	-0.0996	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.3692	1	564620	5392079	1266	-0.0017	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.CM.4752	1	564620	5467078	1279	0.0874	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.CM.6680	1	564620	5502721	1294	0.0671	NEUTRAL	NA	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.3982	1	564620	6501795	1637	0.3019	NEUTRAL	NA	90	"ACAP3,ACOT7,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DVL1,ESPN,FAM132A,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES4,HES5,ICMT,ISG15,KCNAB2,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NPHP4,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF207,RNF223,RPL22,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.3667	1	564620	7927455	2088	0.0282	NEUTRAL	NA	103	Too-Many
TCGA.CI.6623	1	564620	8174414	2146	-0.1461	NEUTRAL	NA	106	Too-Many
TCGA.AG.3599	1	564620	8690902	2261	-0.0404	NEUTRAL	NA	108	Too-Many
TCGA.CI.6621	1	564620	8933241	2312	-0.3659	NEUTRAL	NA	109	Too-Many
TCGA.AG.3890	1	564620	9490338	2487	-0.039	NEUTRAL	NA	115	Too-Many
TCGA.AZ.4614	1	564620	12834252	3187	-0.1068	NEUTRAL	NA	163	Too-Many
TCGA.AF.3913	1	564620	12837839	3209	0.0588	NEUTRAL	NA	164	Too-Many
TCGA.CM.6163	1	564620	12837839	3216	-0.3442	NEUTRAL	NA	164	Too-Many
TCGA.AY.5543	1	564620	12852747	3203	-0.0542	NEUTRAL	NA	165	Too-Many
TCGA.D5.6923	1	564620	12857862	3226	-0.0403	NEUTRAL	NA	165	Too-Many
TCGA.AF.6655	1	564620	12858052	3224	-0.0924	NEUTRAL	NA	165	Too-Many
TCGA.AA.3952	1	564620	12915846	3231	0.0325	NEUTRAL	NA	169	Too-Many
TCGA.CM.5868	1	564620	13802436	3233	0.0461	NEUTRAL	NA	191	Too-Many
TCGA.AA.3561	1	564620	14096820	3340	-0.0006	NEUTRAL	NA	193	Too-Many
TCGA.CA.5797	1	564620	14180831	3371	-0.2278	NEUTRAL	NA	193	Too-Many
TCGA.A6.2682	1	564620	14278580	3388	0.0505	NEUTRAL	NA	193	Too-Many
TCGA.EI.6508	1	564620	14496718	3582	-0.0808	NEUTRAL	NA	193	Too-Many
TCGA.CM.6172	1	564620	15841741	4175	-0.0812	NEUTRAL	NA	202	Too-Many
TCGA.AA.3972	1	564620	16777811	4330	0.1937	NEUTRAL	NA	225	Too-Many
TCGA.CA.6715	1	564620	17246170	4332	-0.0286	NEUTRAL	NA	228	Too-Many
TCGA.D5.6926	1	564620	17531581	4448	-0.0318	NEUTRAL	NA	233	Too-Many
TCGA.CM.6677	1	564620	19113025	5168	-0.0008	NEUTRAL	NA	243	Too-Many
TCGA.AY.6196	1	564620	21267253	5857	0.225	NEUTRAL	NA	278	Too-Many
TCGA.G4.6294	1	564620	22292265	6198	-0.07	NEUTRAL	NA	285	Too-Many
TCGA.AD.6890	1	564620	22311907	6191	-0.398	NEUTRAL	NA	286	Too-Many
TCGA.AF.A56L	1	564620	22320514	6186	-0.1719	NEUTRAL	NA	286	Too-Many
TCGA.AZ.6606	1	564620	22320514	6185	0.0421	NEUTRAL	NA	286	Too-Many
TCGA.CM.4747	1	564620	22531552	6261	-0.4629	NEUTRAL	NA	289	Too-Many
TCGA.F4.6570	1	564620	23743580	6657	-0.0685	NEUTRAL	NA	303	Too-Many
TCGA.A6.6140	1	564620	26176727	7230	0.001	NEUTRAL	NA	338	Too-Many
TCGA.D5.6541	1	564620	26197062	7231	-0.0492	NEUTRAL	NA	339	Too-Many
TCGA.DC.6154	1	564620	26351381	7264	-0.0192	NEUTRAL	NA	342	Too-Many
TCGA.AA.3556	1	564620	26576031	7310	0.0379	NEUTRAL	NA	350	Too-Many
TCGA.D5.6932	1	564620	27844992	7482	-0.2215	NEUTRAL	NA	379	Too-Many
TCGA.AG.4021	1	564620	28339287	7585	-0.0526	NEUTRAL	NA	390	Too-Many
TCGA.D5.6931	1	564620	28864434	7646	-0.0382	NEUTRAL	NA	397	Too-Many
TCGA.AA.3869	1	564620	29575604	7726	-0.027	NEUTRAL	NA	408	Too-Many
TCGA.D5.6531	1	564620	30540387	8100	-0.3439	NEUTRAL	NA	408	Too-Many
TCGA.AA.3518	1	564620	30738431	8144	0.0403	NEUTRAL	NA	408	Too-Many
TCGA.AA.3811	1	564620	30895851	8253	0.0868	NEUTRAL	NA	408	Too-Many
TCGA.AA.3678	1	564620	31180713	8437	-0.4896	NEUTRAL	NA	408	Too-Many
TCGA.DM.A285	1	564620	31973347	8640	-0.1819	NEUTRAL	NA	417	Too-Many
TCGA.EI.7004	1	564620	32081999	8670	-0.3805	NEUTRAL	NA	418	Too-Many
TCGA.A6.6648	1	564620	32595615	8751	-0.3626	NEUTRAL	NA	427	Too-Many
TCGA.AA.3870	1	564620	33221281	8813	-0.4526	NEUTRAL	NA	446	Too-Many
TCGA.D5.6924	1	564620	33637232	8859	-0.1714	NEUTRAL	NA	455	Too-Many
TCGA.AG.4015	1	564620	33740817	8868	-0.3751	NEUTRAL	NA	456	Too-Many
TCGA.DC.6683	1	564620	34222352	9058	-0.3943	NEUTRAL	NA	460	Too-Many
TCGA.AG.3731	1	564620	34686129	9309	-0.1902	NEUTRAL	NA	462	Too-Many
TCGA.D5.6922	1	564620	35919978	9614	-0.1006	NEUTRAL	NA	474	Too-Many
TCGA.5M.AAT4	1	564620	41021035	10880	-0.4996	NEUTRAL	NA	544	Too-Many
TCGA.AA.3955	1	564620	41045801	10886	0.0893	NEUTRAL	NA	544	Too-Many
TCGA.AU.6004	1	564620	43051743	11442	-0.1181	NEUTRAL	NA	561	Too-Many
TCGA.EI.6885	1	564620	45978674	12186	-0.0132	NEUTRAL	NA	616	Too-Many
TCGA.DM.A288	1	564620	47594934	12501	0.0176	NEUTRAL	NA	643	Too-Many
TCGA.AA.3549	1	564620	47858053	12596	0.0635	NEUTRAL	NA	648	Too-Many
TCGA.DM.A0XF	1	564620	48311618	12795	-0.0335	NEUTRAL	NA	651	Too-Many
TCGA.AA.3844	1	564620	48473966	12845	0.1445	NEUTRAL	NA	651	Too-Many
TCGA.AA.3850	1	564620	48581509	12909	0.33245	NEUTRAL	NA	651	Too-Many
TCGA.EI.6881	1	564620	48711814	12946	-0.0019	NEUTRAL	NA	652	Too-Many
TCGA.DM.A1HB	1	564620	48965420	12603	0.0487	NEUTRAL	NA	653	Too-Many
TCGA.A6.2683	1	564620	49025932	13019	-0.3396	NEUTRAL	NA	654	Too-Many
TCGA.AA.3842	1	564620	49129203	13076	-0.1532	NEUTRAL	NA	654	Too-Many
TCGA.AA.A02Y	1	564620	49139489	13078	0.0151	NEUTRAL	NA	654	Too-Many
TCGA.DC.4745	1	564620	49156376	13104	-0.0861	NEUTRAL	NA	654	Too-Many
TCGA.D5.6535	1	564620	49248983	13155	-0.4013	NEUTRAL	NA	655	Too-Many
TCGA.AD.6965	1	564620	49267570	13122	-0.2487	NEUTRAL	NA	655	Too-Many
TCGA.A6.2686	1	564620	49271310	13147	0.0335	NEUTRAL	NA	655	Too-Many
TCGA.DM.A28F	1	564620	49396988	13199	-0.0716	NEUTRAL	NA	655	Too-Many
TCGA.A6.2685	1	564620	49428483	13188	0.0158	NEUTRAL	NA	655	Too-Many
TCGA.A6.6138	1	564620	49506581	13250	-0.1982	NEUTRAL	NA	655	Too-Many
TCGA.G4.6586	1	564620	49719902	13273	-0.0617	NEUTRAL	NA	655	Too-Many
TCGA.A6.4105	1	564620	49954700	13299	-0.381	NEUTRAL	NA	655	Too-Many
TCGA.SS.A7HO	1	564620	50110849	13301	-0.3224	NEUTRAL	NA	655	Too-Many
TCGA.F4.6460	1	564620	50373691	13330	-0.385	NEUTRAL	NA	655	Too-Many
TCGA.DY.A1DG	1	564620	51644701	13506	-0.0322	NEUTRAL	NA	660	Too-Many
TCGA.F5.6812	1	564620	53250212	13725	-0.0009	NEUTRAL	NA	678	Too-Many
TCGA.AA.3867	1	564620	53513981	13773	0.0085	NEUTRAL	NA	681	Too-Many
TCGA.A6.2671	1	564620	55405531	14452	-0.0309	NEUTRAL	NA	709	Too-Many
TCGA.AG.3885	1	564620	55513060	14523	0.0062	NEUTRAL	NA	712	Too-Many
TCGA.DM.A1HA	1	564620	55574136	14546	0.0047	NEUTRAL	NA	713	Too-Many
TCGA.A6.2672	1	564620	55731732	14524	-0.353	NEUTRAL	NA	713	Too-Many
TCGA.AA.3864	1	564620	56506261	14936	0.172	NEUTRAL	NA	713	Too-Many
TCGA.G4.6295	1	564620	57691170	15545	-0.3978	NEUTRAL	NA	719	Too-Many
TCGA.A6.5667	1	564620	60549058	16780	-0.4751	NEUTRAL	NA	727	Too-Many
TCGA.AA.3977	1	564620	60601855	16768	0.1421	NEUTRAL	NA	727	Too-Many
TCGA.EI.6509	1	564620	61671467	17166	-0.0956	NEUTRAL	NA	728	Too-Many
TCGA.AD.6888	1	564620	62284349	17415	-0.0459	NEUTRAL	NA	730	Too-Many
TCGA.EI.6506	1	564620	62284349	17391	-0.2082	NEUTRAL	NA	730	Too-Many
TCGA.AG.3594	1	564620	62661791	17545	0.0059	NEUTRAL	NA	731	Too-Many
TCGA.A6.2679	1	564620	64401946	18159	0	NEUTRAL	NA	742	Too-Many
TCGA.F4.6807	1	564620	65570027	18588	0.0034	NEUTRAL	NA	746	Too-Many
TCGA.DY.A1DC	1	564620	66473920	18882	-0.0615	NEUTRAL	NA	751	Too-Many
TCGA.AZ.6600	1	564620	69586484	20066	-0.2725	NEUTRAL	NA	767	Too-Many
TCGA.AA.3697	1	564620	71293969	20530	-0.2138	NEUTRAL	NA	773	Too-Many
TCGA.F4.6808	1	564620	71299621	20532	-0.0068	NEUTRAL	NA	773	Too-Many
TCGA.D5.5538	1	564620	71339747	20556	-0.0258	NEUTRAL	NA	774	Too-Many
TCGA.CM.5864	1	564620	72740072	20895	-0.0743	NEUTRAL	NA	776	Too-Many
TCGA.AG.3882	1	564620	75808587	21700	-0.2867	NEUTRAL	NA	785	Too-Many
TCGA.AG.3591	1	564620	78288314	22542	0.1011	NEUTRAL	NA	796	Too-Many
TCGA.BM.6198	1	564620	80207765	23077	-0.45155	NEUTRAL	NA	804	Too-Many
TCGA.AG.3732	1	564620	82123484	23711	-0.0124	NEUTRAL	NA	804	Too-Many
TCGA.A6.6652	1	564620	83059706	24048	-0.0176	NEUTRAL	NA	805	Too-Many
TCGA.AZ.4615	1	564620	83955621	24331	-0.0038	NEUTRAL	NA	805	Too-Many
TCGA.AA.3841	1	564620	85070704	24774	-0.3557	NEUTRAL	NA	812	Too-Many
TCGA.EI.6883	1	564620	86381839	25203	0	NEUTRAL	NA	824	Too-Many
TCGA.F4.6459	1	564620	86724056	25413	-0.0335	NEUTRAL	NA	824	Too-Many
TCGA.AG.3580	1	564620	92193053	27133	0.003	NEUTRAL	NA	853	Too-Many
TCGA.AF.A56K	1	564620	95347279	27936	-0.3861	NEUTRAL	NA	878	Too-Many
TCGA.DM.A1D9	1	564620	95429025	27997	0.0176	NEUTRAL	NA	879	Too-Many
TCGA.AA.3848	1	564620	95829130	28192	-0.4674	NEUTRAL	NA	883	Too-Many
TCGA.AG.3881	1	564620	96127080	28279	-0.2673	NEUTRAL	NA	883	Too-Many
TCGA.D5.5539	1	564620	100274572	29383	-0.0491	NEUTRAL	NA	890	Too-Many
TCGA.AA.3519	1	564620	103244535	30342	-0.3242	NEUTRAL	NA	906	Too-Many
TCGA.AM.5821	1	564620	103283197	30249	0.0328	NEUTRAL	NA	906	Too-Many
TCGA.AA.3851	1	564620	104130167	30441	-0.4455	NEUTRAL	NA	910	Too-Many
TCGA.CM.5862	1	564620	107406662	31210	-0.1752	NEUTRAL	NA	914	Too-Many
TCGA.G4.6314	1	564620	107873814	31441	-0.3254	NEUTRAL	NA	916	Too-Many
TCGA.AG.3898	1	564620	108382432	31565	-0.2316	NEUTRAL	NA	917	Too-Many
TCGA.F5.6863	1	564620	109366285	31851	-0.0798	NEUTRAL	NA	926	Too-Many
TCGA.AF.6136	1	564620	113767256	33488	-0.3112	NEUTRAL	NA	996	Too-Many
TCGA.G4.6298	1	564620	117152958	34621	-0.4748	NEUTRAL	NA	1025	Too-Many
TCGA.F5.6464	1	564620	118133638	34944	-0.037	NEUTRAL	NA	1033	Too-Many
TCGA.G5.6233	1	564620	118836066	35150	-0.0748	NEUTRAL	NA	1037	Too-Many
TCGA.A6.5660	1	564620	119610182	35266	-0.4466	NEUTRAL	NA	1039	Too-Many
TCGA.AF.2692	1	564620	119836834	35437	-0.4259	NEUTRAL	NA	1039	Too-Many
TCGA.QG.A5YV	1	564620	121280974	35458	-0.3903	NEUTRAL	NA	1051	Too-Many
TCGA.AY.A69D	1	564620	121291079	35645	-0.3353	NEUTRAL	NA	1051	Too-Many
TCGA.G4.6299	1	564620	121291079	35717	-0.0459	NEUTRAL	NA	1051	Too-Many
TCGA.DM.A28C	1	564620	144033938	35679	-0.0167	NEUTRAL	NA	1054	Too-Many
TCGA.A6.6654	1	564620	144549928	35649	-0.0915	NEUTRAL	NA	1057	Too-Many
TCGA.CM.5861	1	564620	144549928	35693	-0.0049	NEUTRAL	NA	1057	Too-Many
TCGA.EI.7002	1	564620	144549928	35646	-0.487	NEUTRAL	NA	1057	Too-Many
TCGA.A6.2674	1	564620	144832254	35711	-0.1931	NEUTRAL	NA	1059	Too-Many
TCGA.AG.3883	1	564620	144832254	35737	-0.0748	NEUTRAL	NA	1059	Too-Many
TCGA.CM.4746	1	564620	144832254	35688	-0.0009	NEUTRAL	NA	1059	Too-Many
TCGA.CM.6167	1	564620	144832254	35712	-0.0208	NEUTRAL	NA	1059	Too-Many
TCGA.F4.6855	1	564620	144832254	35613	-0.3933	NEUTRAL	NA	1059	Too-Many
TCGA.G4.6317	1	564620	144832254	35713	-0.3094	NEUTRAL	NA	1059	Too-Many
TCGA.QL.A97D	1	564620	144832254	35713	-0.1212	NEUTRAL	NA	1059	Too-Many
TCGA.AA.3675	1	564620	144849543	35736	0.0007	NEUTRAL	NA	1059	Too-Many
TCGA.5M.AATE	1	564620	144876744	35718	-0.0691	NEUTRAL	NA	1060	Too-Many
TCGA.AA.3854	1	564620	144901892	35749	0.0033	NEUTRAL	NA	1060	Too-Many
TCGA.AA.3837	1	564620	144920926	35754	-0.3077	NEUTRAL	NA	1060	Too-Many
TCGA.AA.3949	1	564620	144920926	35700	0.0218	NEUTRAL	NA	1060	Too-Many
TCGA.A6.6137	1	564620	144938878	35744	-0.0434	NEUTRAL	NA	1060	Too-Many
TCGA.AA.3994	1	564620	144957687	35692	-0.0063	NEUTRAL	NA	1060	Too-Many
TCGA.G4.6626	1	564620	144957687	35746	-0.3828	NEUTRAL	NA	1060	Too-Many
TCGA.A6.2680	1	564620	144997256	35688	-0.36	NEUTRAL	NA	1060	Too-Many
TCGA.A6.2681	1	564620	144997256	35708	-0.0742	NEUTRAL	NA	1060	Too-Many
TCGA.AA.3696	1	564620	144997256	35760	-0.0061	NEUTRAL	NA	1060	Too-Many
TCGA.A6.3807	1	564620	145004742	35566	0.0027	NEUTRAL	NA	1060	Too-Many
TCGA.CM.6164	1	564620	145004742	35701	-0.1927	NEUTRAL	NA	1060	Too-Many
TCGA.AA.3712	1	564620	145009381	35737	-0.4223	NEUTRAL	NA	1060	Too-Many
TCGA.AA.3866	1	564620	145009381	35714	-0.3896	NEUTRAL	NA	1060	Too-Many
TCGA.AH.6643	1	564620	145009381	35674	-0.4119	NEUTRAL	NA	1060	Too-Many
TCGA.CA.5255	1	564620	145009381	35641	-0.1777	NEUTRAL	NA	1060	Too-Many
TCGA.G4.6303	1	564620	145009381	35743	-0.3749	NEUTRAL	NA	1060	Too-Many
TCGA.G4.6311	1	564620	145009381	35725	-0.0342	NEUTRAL	NA	1060	Too-Many
TCGA.AF.6672	1	564620	145013753	35683	-0.016	NEUTRAL	NA	1060	Too-Many
TCGA.DM.A0X9	1	564620	145013753	35716	-0.0038	NEUTRAL	NA	1060	Too-Many
TCGA.G4.6297	1	564620	145013753	35723	-0.1199	NEUTRAL	NA	1060	Too-Many
TCGA.A6.6649	1	564620	145382123	35739	-0.0467	NEUTRAL	NA	1063	Too-Many
TCGA.AA.3688	1	564620	145394954	35759	-0.3062	NEUTRAL	NA	1063	Too-Many
TCGA.DC.6155	1	564620	145394954	35571	-0.1412	NEUTRAL	NA	1063	Too-Many
TCGA.AF.2687	1	564620	145395439	35641	-0.2364	NEUTRAL	NA	1063	Too-Many
TCGA.EI.6882	1	564620	145416055	35664	0.0034	NEUTRAL	NA	1064	Too-Many
TCGA.AU.3779	1	564620	145416583	35737	-0.3343	NEUTRAL	NA	1064	Too-Many
TCGA.NH.A50T	1	564620	145416583	35522	-0.3647	NEUTRAL	NA	1064	Too-Many
TCGA.AD.6901	1	564620	145434930	35642	-0.2982	NEUTRAL	NA	1064	Too-Many
TCGA.AH.6544	1	564620	145446284	35702	-0.2787	NEUTRAL	NA	1065	Too-Many
TCGA.AA.3968	1	564620	145474967	35721	-0.4184	NEUTRAL	NA	1067	Too-Many
TCGA.CA.6716	1	564620	145551514	35701	-0.2713	NEUTRAL	NA	1072	Too-Many
TCGA.AG.4022	1	564620	147825661	36146	-0.0428	NEUTRAL	NA	1089	Too-Many
TCGA.F5.6810	1	564620	149885582	36122	-0.0594	NEUTRAL	NA	1108	Too-Many
TCGA.AA.3664	1	564620	151520730	36420	0.0015	NEUTRAL	NA	1158	Too-Many
TCGA.AA.3855	1	564620	155867998	37426	-0.2701	NEUTRAL	NA	1297	Too-Many
TCGA.AA.3814	1	564620	157274236	37888	0	NEUTRAL	NA	1342	Too-Many
TCGA.AA.A01R	1	564620	159303803	38702	0.0047	NEUTRAL	NA	1376	Too-Many
TCGA.AA.A01V	1	564620	161496899	39381	0.0213	NEUTRAL	NA	1437	Too-Many
TCGA.F5.6465	1	564620	161496899	39420	-0.0102	NEUTRAL	NA	1437	Too-Many
TCGA.CK.6751	1	564620	164948278	40639	5.00E-04	NEUTRAL	NA	1459	Too-Many
TCGA.CK.4950	1	564620	166260510	41155	-0.0303	NEUTRAL	NA	1467	Too-Many
TCGA.AA.3655	1	564620	167616837	42118	0.001	NEUTRAL	NA	1477	Too-Many
TCGA.A6.2678	1	564620	168991238	42679	0.0012	NEUTRAL	NA	1488	Too-Many
TCGA.EI.6512	1	564620	171967529	43792	0.0004	NEUTRAL	NA	1514	Too-Many
TCGA.4T.AA8H	1	564620	180676646	46318	-0.0068	NEUTRAL	NA	1561	Too-Many
TCGA.A6.6141	1	564620	180888541	46338	-0.0113	NEUTRAL	NA	1562	Too-Many
TCGA.AG.3726	1	564620	183809638	47464	0.0089	NEUTRAL	NA	1584	Too-Many
TCGA.AA.3494	1	564620	185096575	47848	-0.0164	NEUTRAL	NA	1591	Too-Many
TCGA.DM.A0XD	1	564620	189286112	48925	0.008	NEUTRAL	NA	1601	Too-Many
TCGA.AF.A56N	1	564620	191825751	49702	-0.2619	NEUTRAL	NA	1602	Too-Many
TCGA.EI.6513	1	564620	192328454	49928	0.0018	NEUTRAL	NA	1604	Too-Many
TCGA.AA.3971	1	564620	197725372	51318	-0.0025	NEUTRAL	NA	1624	Too-Many
TCGA.AA.3979	1	564620	204691324	53591	0.0145	NEUTRAL	NA	1693	Too-Many
TCGA.CK.5912	1	564620	207305068	54420	0.159	NEUTRAL	NA	1735	Too-Many
TCGA.AG.3575	1	564620	208851566	55228	0	NEUTRAL	NA	1742	Too-Many
TCGA.AA.A01T	1	564620	211663220	56305	-0.2307	NEUTRAL	NA	1758	Too-Many
TCGA.AZ.6598	1	564620	213273548	56874	0	NEUTRAL	NA	1776	Too-Many
TCGA.AZ.6599	1	564620	213595740	56935	-0.0115	NEUTRAL	NA	1776	Too-Many
TCGA.AA.3693	1	564620	222788061	60445	0.0139	NEUTRAL	NA	1802	Too-Many
TCGA.G4.6307	1	564620	225204968	61129	-0.0112	NEUTRAL	NA	1820	Too-Many
TCGA.CK.4947	1	564620	228730667	62025	-0.0132	NEUTRAL	NA	1859	Too-Many
TCGA.A6.5656	1	564620	230163631	62372	-0.0008	NEUTRAL	NA	1868	Too-Many
TCGA.AG.3725	1	564620	233070802	63844	0.0022	NEUTRAL	NA	1888	Too-Many
TCGA.AZ.6607	1	564620	233771618	64078	-0.2945	NEUTRAL	NA	1892	Too-Many
TCGA.AG.3728	1	564620	235701313	65022	-0.1378	NEUTRAL	NA	1902	Too-Many
TCGA.D5.6539	1	564620	243053056	68086	0.0636	NEUTRAL	NA	1928	Too-Many
TCGA.DC.6682	1	564620	246161453	69071	-0.0674	NEUTRAL	NA	1941	Too-Many
TCGA.G4.6323	1	564620	247841858	69654	-0.0118	NEUTRAL	NA	1960	Too-Many
TCGA.NH.A50U	1	564620	248578621	69832	-0.4124	NEUTRAL	NA	1984	Too-Many
TCGA.NH.A6GC	1	564620	248578621	69777	-0.0047	NEUTRAL	NA	1984	Too-Many
TCGA.CM.6162	1	564620	249074031	69649	-0.0126	NEUTRAL	NA	1996	Too-Many
TCGA.3L.AA1B	1	564620	249198691	69863	-0.0809	NEUTRAL	NA	1999	Too-Many
TCGA.5M.AAT6	1	564620	249198691	69898	0.0125	NEUTRAL	NA	1999	Too-Many
TCGA.5M.AATA	1	564620	249198691	69869	0.0444	NEUTRAL	NA	1999	Too-Many
TCGA.A6.2675	1	564620	249198691	69427	-0.0191	NEUTRAL	NA	1999	Too-Many
TCGA.A6.2684	1	564620	249198691	64065	-0.0035	NEUTRAL	NA	1999	Too-Many
TCGA.A6.3809	1	564620	249198691	64101	0.0073	NEUTRAL	NA	1999	Too-Many
TCGA.A6.5657	1	564620	249198691	69767	-0.0085	NEUTRAL	NA	1999	Too-Many
TCGA.A6.5659	1	564620	249198691	63981	0	NEUTRAL	NA	1999	Too-Many
TCGA.A6.5664	1	564620	249198691	69713	-0.0149	NEUTRAL	NA	1999	Too-Many
TCGA.A6.6142	1	564620	249198691	69918	0	NEUTRAL	NA	1999	Too-Many
TCGA.A6.6650	1	564620	249198691	64015	0	NEUTRAL	NA	1999	Too-Many
TCGA.A6.6780	1	564620	249198691	69752	0.0071	NEUTRAL	NA	1999	Too-Many
TCGA.A6.6781	1	564620	249198691	63960	-0.0136	NEUTRAL	NA	1999	Too-Many
TCGA.A6.6782	1	564620	249198691	69643	-0.0144	NEUTRAL	NA	1999	Too-Many
TCGA.A6.A565	1	564620	249198691	69427	-0.0126	NEUTRAL	NA	1999	Too-Many
TCGA.A6.A566	1	564620	249198691	69306	-0.0011	NEUTRAL	NA	1999	Too-Many
TCGA.A6.A567	1	564620	249198691	69374	0	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3489	1	564620	249198691	69697	-0.0611	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3492	1	564620	249198691	69879	0.0059	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3495	1	564620	249198691	69882	0.0016	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3496	1	564620	249198691	69663	0.0004	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3502	1	564620	249198691	69876	-0.0068	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3510	1	564620	249198691	69867	0.0009	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3511	1	564620	249198691	69764	0.0593	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3514	1	564620	249198691	69896	0.0089	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3516	1	564620	249198691	69814	0.0079	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3524	1	564620	249198691	69848	0	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3527	1	564620	249198691	69889	-0.0013	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3529	1	564620	249198691	69883	0	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3532	1	564620	249198691	69889	-0.0027	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3534	1	564620	249198691	69896	-0.0012	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3543	1	564620	249198691	69832	0.005	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3548	1	564620	249198691	69929	0	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3555	1	564620	249198691	69938	0.0028	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3558	1	564620	249198691	69900	0.0016	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3560	1	564620	249198691	69918	-0.019	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3662	1	564620	249198691	69901	0.0024	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3663	1	564620	249198691	69804	0.0087	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3673	1	564620	249198691	69951	-0.1151	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3680	1	564620	249198691	69950	0	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3681	1	564620	249198691	69927	0.0121	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3684	1	564620	249198691	69948	-0.0029	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3685	1	564620	249198691	69959	-0.0729	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3695	1	564620	249198691	69956	-0.3836	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3710	1	564620	249198691	69876	0.0006	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3713	1	564620	249198691	69873	-0.0032	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3715	1	564620	249198691	69956	0.0083	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3812	1	564620	249198691	69951	0	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3818	1	564620	249198691	69946	0.0028	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3821	1	564620	249198691	69805	0.0094	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3831	1	564620	249198691	69856	0.0056	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3833	1	564620	249198691	69952	-0.0069	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3845	1	564620	249198691	69817	0.0157	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3846	1	564620	249198691	69845	0.0028	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3852	1	564620	249198691	69957	-0.0042	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3875	1	564620	249198691	69952	0.0157	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3877	1	564620	249198691	69882	0.0049	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3947	1	564620	249198691	69788	0.0644	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3950	1	564620	249198691	69875	0.0139	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3956	1	564620	249198691	69851	0.0288	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3966	1	564620	249198691	69837	-0.142	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3975	1	564620	249198691	69792	0.0064	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3984	1	564620	249198691	69808	0	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3986	1	564620	249198691	69869	0.0025	NEUTRAL	NA	1999	Too-Many
TCGA.AA.3989	1	564620	249198691	69881	-0.2579	NEUTRAL	NA	1999	Too-Many
TCGA.AA.A01P	1	564620	249198691	69822	-0.0029	NEUTRAL	NA	1999	Too-Many
TCGA.AA.A01S	1	564620	249198691	69880	0.00095	NEUTRAL	NA	1999	Too-Many
TCGA.AA.A01Z	1	564620	249198691	69873	0.0079	NEUTRAL	NA	1999	Too-Many
TCGA.AA.A022	1	564620	249198691	69782	-0.0096	NEUTRAL	NA	1999	Too-Many
TCGA.AA.A02O	1	564620	249198691	69882	0.0006	NEUTRAL	NA	1999	Too-Many
TCGA.AA.A03F	1	564620	249198691	69871	0.001	NEUTRAL	NA	1999	Too-Many
TCGA.AA.A03J	1	564620	249198691	68387	-0.094	NEUTRAL	NA	1999	Too-Many
TCGA.AD.5900	1	564620	249198691	69816	-0.0059	NEUTRAL	NA	1999	Too-Many
TCGA.AD.6548	1	564620	249198691	69686	0.0007	NEUTRAL	NA	1999	Too-Many
TCGA.AD.6889	1	564620	249198691	69829	-0.0134	NEUTRAL	NA	1999	Too-Many
TCGA.AD.6895	1	564620	249198691	69821	-0.018	NEUTRAL	NA	1999	Too-Many
TCGA.AD.6899	1	564620	249198691	69690	0	NEUTRAL	NA	1999	Too-Many
TCGA.AD.6963	1	564620	249198691	69836	0.0083	NEUTRAL	NA	1999	Too-Many
TCGA.AD.6964	1	564620	249198691	69827	-0.0065	NEUTRAL	NA	1999	Too-Many
TCGA.AD.A5EJ	1	564620	249198691	69496	-0.0021	NEUTRAL	NA	1999	Too-Many
TCGA.AD.A5EK	1	564620	249198691	69472	-0.0389	NEUTRAL	NA	1999	Too-Many
TCGA.AF.2690	1	564620	249198691	69920	-0.1274	NEUTRAL	NA	1999	Too-Many
TCGA.AF.2691	1	564620	249198691	69893	-0.0012	NEUTRAL	NA	1999	Too-Many
TCGA.AF.3911	1	564620	249198691	69909	-0.0046	NEUTRAL	NA	1999	Too-Many
TCGA.AF.5654	1	564620	249198691	69766	0.0043	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3574	1	564620	249198691	69924	-0.0009	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3581	1	564620	249198691	69909	-0.0019	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3592	1	564620	249198691	69928	-0.0065	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3598	1	564620	249198691	69742	0	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3602	1	564620	249198691	69594	0.0134	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3742	1	564620	249198691	69428	0.0104	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3878	1	564620	249198691	69956	0.0133	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3892	1	564620	249198691	69668	0	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3893	1	564620	249198691	69280	-0.0075	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3894	1	564620	249198691	69683	0.0102	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3896	1	564620	249198691	69711	0	NEUTRAL	NA	1999	Too-Many
TCGA.AG.3902	1	564620	249198691	69693	0.0084	NEUTRAL	NA	1999	Too-Many
TCGA.AG.4008	1	564620	249198691	69432	-0.0269	NEUTRAL	NA	1999	Too-Many
TCGA.AG.A020	1	564620	249198691	69792	-0.0321	NEUTRAL	NA	1999	Too-Many
TCGA.AG.A02N	1	564620	249198691	69816	0	NEUTRAL	NA	1999	Too-Many
TCGA.AH.6547	1	564620	249198691	69841	-0.0098	NEUTRAL	NA	1999	Too-Many
TCGA.AH.6897	1	564620	249198691	69758	0.0019	NEUTRAL	NA	1999	Too-Many
TCGA.AH.6903	1	564620	249198691	69762	-0.0023	NEUTRAL	NA	1999	Too-Many
TCGA.AY.4070	1	564620	249198691	69595	-0.0814	NEUTRAL	NA	1999	Too-Many
TCGA.AY.4071	1	564620	249198691	69565	-0.0037	NEUTRAL	NA	1999	Too-Many
TCGA.AY.6197	1	564620	249198691	68344	0	NEUTRAL	NA	1999	Too-Many
TCGA.AY.6386	1	564620	249198691	69881	-0.0042	NEUTRAL	NA	1999	Too-Many
TCGA.AY.A8YK	1	564620	249198691	69894	-0.0619	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.4308	1	564620	249198691	69881	0	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.4315	1	564620	249198691	69846	0.0007	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.4323	1	564620	249198691	69650	0.0572	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.4616	1	564620	249198691	69732	-0.2485	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.4681	1	564620	249198691	69859	0.0357	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.5403	1	564620	249198691	69830	-0.0528	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.5407	1	564620	249198691	69920	-0.0033	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.6601	1	564620	249198691	69925	0.0008	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.6603	1	564620	249198691	69778	-0.1958	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.6605	1	564620	249198691	69684	-0.1604	NEUTRAL	NA	1999	Too-Many
TCGA.AZ.6608	1	564620	249198691	69693	0	NEUTRAL	NA	1999	Too-Many
TCGA.CA.5256	1	564620	249198691	69365	-0.3184	NEUTRAL	NA	1999	Too-Many
TCGA.CA.5796	1	564620	249198691	69776	0	NEUTRAL	NA	1999	Too-Many
TCGA.CA.6717	1	564620	249198691	69624	-0.0062	NEUTRAL	NA	1999	Too-Many
TCGA.CA.6718	1	564620	249198691	69710	-0.0029	NEUTRAL	NA	1999	Too-Many
TCGA.CI.6619	1	564620	249198691	69813	0.0362	NEUTRAL	NA	1999	Too-Many
TCGA.CI.6620	1	564620	249198691	69769	0.0122	NEUTRAL	NA	1999	Too-Many
TCGA.CI.6624	1	564620	249198691	69793	-0.0169	NEUTRAL	NA	1999	Too-Many
TCGA.CK.4951	1	564620	249198691	69568	0.0049	NEUTRAL	NA	1999	Too-Many
TCGA.CK.5913	1	564620	249198691	69834	0.0035	NEUTRAL	NA	1999	Too-Many
TCGA.CK.5915	1	564620	249198691	69791	-0.2483	NEUTRAL	NA	1999	Too-Many
TCGA.CK.5916	1	564620	249198691	69759	-0.0044	NEUTRAL	NA	1999	Too-Many
TCGA.CK.6746	1	564620	249198691	69725	0.0083	NEUTRAL	NA	1999	Too-Many
TCGA.CK.6747	1	564620	249198691	69645	-0.0115	NEUTRAL	NA	1999	Too-Many
TCGA.CK.6748	1	564620	249198691	69818	-0.4242	NEUTRAL	NA	1999	Too-Many
TCGA.CL.4957	1	564620	249198691	69944	0.004	NEUTRAL	NA	1999	Too-Many
TCGA.CL.5917	1	564620	249198691	69769	-0.0193	NEUTRAL	NA	1999	Too-Many
TCGA.CL.5918	1	564620	249198691	69770	-0.026	NEUTRAL	NA	1999	Too-Many
TCGA.CM.4743	1	564620	249198691	69902	-0.0066	NEUTRAL	NA	1999	Too-Many
TCGA.CM.4748	1	564620	249198691	69876	0.0002	NEUTRAL	NA	1999	Too-Many
TCGA.CM.5341	1	564620	249198691	69875	-0.067	NEUTRAL	NA	1999	Too-Many
TCGA.CM.5344	1	564620	249198691	69897	-0.2776	NEUTRAL	NA	1999	Too-Many
TCGA.CM.5860	1	564620	249198691	69801	-0.0223	NEUTRAL	NA	1999	Too-Many
TCGA.CM.5863	1	564620	249198691	69799	0.0972	NEUTRAL	NA	1999	Too-Many
TCGA.CM.6161	1	564620	249198691	69800	-0.0609	NEUTRAL	NA	1999	Too-Many
TCGA.CM.6168	1	564620	249198691	69889	-0.0029	NEUTRAL	NA	1999	Too-Many
TCGA.CM.6169	1	564620	249198691	69531	-0.1085	NEUTRAL	NA	1999	Too-Many
TCGA.CM.6171	1	564620	249198691	69914	-0.0144	NEUTRAL	NA	1999	Too-Many
TCGA.CM.6674	1	564620	249198691	69763	-0.0078	NEUTRAL	NA	1999	Too-Many
TCGA.CM.6675	1	564620	249198691	69711	0.0134	NEUTRAL	NA	1999	Too-Many
TCGA.CM.6678	1	564620	249198691	69755	-0.0465	NEUTRAL	NA	1999	Too-Many
TCGA.CM.6679	1	564620	249198691	69662	-0.17215	NEUTRAL	NA	1999	Too-Many
TCGA.D5.5541	1	564620	249198691	69914	-0.0032	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6529	1	564620	249198691	69917	-0.0708	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6532	1	564620	249198691	69885	0.0037	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6534	1	564620	249198691	69711	0.0029	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6537	1	564620	249198691	69501	-0.0129	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6538	1	564620	249198691	69906	-0.0226	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6540	1	564620	249198691	69755	0	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6898	1	564620	249198691	69760	0.0613	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6920	1	564620	249198691	69719	-0.0021	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6927	1	564620	249198691	69771	0.0015	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6928	1	564620	249198691	69751	0.0033	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6929	1	564620	249198691	69772	-0.0261	NEUTRAL	NA	1999	Too-Many
TCGA.D5.6930	1	564620	249198691	69737	-0.0003	NEUTRAL	NA	1999	Too-Many
TCGA.D5.7000	1	564620	249198691	69580	0.0021	NEUTRAL	NA	1999	Too-Many
TCGA.DC.5869	1	564620	249198691	69753	-0.1993	NEUTRAL	NA	1999	Too-Many
TCGA.DC.6158	1	564620	249198691	69715	0.0234	NEUTRAL	NA	1999	Too-Many
TCGA.DM.A1D0	1	564620	249198691	69522	0.0136	NEUTRAL	NA	1999	Too-Many
TCGA.DM.A1D7	1	564620	249198691	69909	0.0136	NEUTRAL	NA	1999	Too-Many
TCGA.DM.A1D8	1	564620	249198691	69794	-0.0088	NEUTRAL	NA	1999	Too-Many
TCGA.DM.A1DA	1	564620	249198691	69889	-0.1141	NEUTRAL	NA	1999	Too-Many
TCGA.DM.A280	1	564620	249198691	69791	0.0024	NEUTRAL	NA	1999	Too-Many
TCGA.DM.A28E	1	564620	249198691	69745	0.0013	NEUTRAL	NA	1999	Too-Many
TCGA.DM.A28G	1	564620	249198691	69822	0.0013	NEUTRAL	NA	1999	Too-Many
TCGA.DT.5265	1	564620	249198691	69832	-0.0213	NEUTRAL	NA	1999	Too-Many
TCGA.DY.A1DD	1	564620	249198691	69903	0.0074	NEUTRAL	NA	1999	Too-Many
TCGA.DY.A1DF	1	564620	249198691	69894	0.3378	NEUTRAL	NA	1999	Too-Many
TCGA.EF.5830	1	564620	249198691	69784	-0.1556	NEUTRAL	NA	1999	Too-Many
TCGA.EI.6507	1	564620	249198691	69912	-0.0014	NEUTRAL	NA	1999	Too-Many
TCGA.EI.6510	1	564620	249198691	69781	-0.0093	NEUTRAL	NA	1999	Too-Many
TCGA.EI.6514	1	564620	249198691	69807	-0.0666	NEUTRAL	NA	1999	Too-Many
TCGA.EI.6884	1	564620	249198691	69699	0.1021	NEUTRAL	NA	1999	Too-Many
TCGA.EI.6917	1	564620	249198691	69667	-0.0169	NEUTRAL	NA	1999	Too-Many
TCGA.F4.6463	1	564620	249198691	69893	-0.0191	NEUTRAL	NA	1999	Too-Many
TCGA.F4.6703	1	564620	249198691	69806	-0.015	NEUTRAL	NA	1999	Too-Many
TCGA.F4.6704	1	564620	249198691	69818	-0.1565	NEUTRAL	NA	1999	Too-Many
TCGA.F4.6805	1	564620	249198691	69800	0.0007	NEUTRAL	NA	1999	Too-Many
TCGA.F4.6809	1	564620	249198691	69786	-0.0612	NEUTRAL	NA	1999	Too-Many
TCGA.F4.6854	1	564620	249198691	69730	-0.0069	NEUTRAL	NA	1999	Too-Many
TCGA.F4.6856	1	564620	249198691	69766	0.0064	NEUTRAL	NA	1999	Too-Many
TCGA.F5.6571	1	564620	249198691	69816	0.0035	NEUTRAL	NA	1999	Too-Many
TCGA.F5.6702	1	564620	249198691	69632	-0.1289	NEUTRAL	NA	1999	Too-Many
TCGA.F5.6814	1	564620	249198691	69757	0.0128	NEUTRAL	NA	1999	Too-Many
TCGA.F5.6861	1	564620	249198691	69730	-0.0066	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6293	1	564620	249198691	69872	-0.018	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6302	1	564620	249198691	69905	-0.0051	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6304	1	564620	249198691	69769	-0.0095	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6306	1	564620	249198691	69875	-0.0149	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6309	1	564620	249198691	69800	0.0112	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6315	1	564620	249198691	69923	-0.1866	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6320	1	564620	249198691	69916	0.0266	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6321	1	564620	249198691	69915	0	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6588	1	564620	249198691	69919	-0.0044	NEUTRAL	NA	1999	Too-Many
TCGA.G4.6625	1	564620	249198691	69915	-0.1184	NEUTRAL	NA	1999	Too-Many
TCGA.G5.6235	1	564620	249198691	69941	-0.0132	NEUTRAL	NA	1999	Too-Many
TCGA.NH.A50V	1	564620	249198691	69482	-0.0127	NEUTRAL	NA	1999	Too-Many
TCGA.NH.A6GB	1	564620	249198691	69885	-0.0174	NEUTRAL	NA	1999	Too-Many
TCGA.NH.A8F7	1	564620	249198691	69640	0.0008	NEUTRAL	NA	1999	Too-Many
TCGA.QG.A5YW	1	564620	249198691	69496	-0.0417	NEUTRAL	NA	1999	Too-Many
TCGA.QG.A5YX	1	564620	249198691	69299	0.018	NEUTRAL	NA	1999	Too-Many
TCGA.QG.A5Z1	1	564620	249198691	69263	0.0044	NEUTRAL	NA	1999	Too-Many
TCGA.QG.A5Z2	1	564620	249198691	69360	-0.0132	NEUTRAL	NA	1999	Too-Many
TCGA.T9.A92H	1	564620	249198691	69896	-0.2847	NEUTRAL	NA	1999	Too-Many
TCGA.WS.AB45	1	564620	249198691	69879	0.0783	NEUTRAL	NA	1999	Too-Many
TCGA.DC.5337	1	740856	1871336	68	-0.0916	NEUTRAL	NA	48	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,GNB1,HES4,ISG15,KLHL17,MIB2,MMP23B,MRPL20,MXRA8,NADK,NOC2L,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.CM.5348	1	740856	14403791	3526	-0.041	NEUTRAL	NA	190	Too-Many
TCGA.CM.6170	1	740856	18305634	4745	-0.0312	NEUTRAL	NA	237	Too-Many
TCGA.CM.6166	1	740856	249198691	69921	-0.024	NEUTRAL	NA	1996	Too-Many
TCGA.CM.6676	1	740856	249198691	69680	-0.0699	NEUTRAL	NA	1996	Too-Many
TCGA.D5.6530	1	740856	249198691	69920	-0.0106	NEUTRAL	NA	1996	Too-Many
TCGA.DC.6157	1	740856	249198691	69231	-0.2291	NEUTRAL	NA	1996	Too-Many
TCGA.F5.6811.01A	1	751906	74592205	7239	-0.3499	NEUTRAL	NA	774	Too-Many
TCGA.CK.4952.01A	1	751906	102234840	8653	-0.134	NEUTRAL	NA	902	Too-Many
TCGA.AA.A00N.01A	1	762043	1190535	113	-0.4454	NEUTRAL	NA	17	"AGRN,B3GALT6,C1orf159,FAM132A,HES4,ISG15,KLHL17,NOC2L,PERM1,PLEKHN1,RNF223,SAMD11,SDF4,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.AG.3891.01A	1	762043	2337876	220	0.1396	NEUTRAL	NA	55	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,GABRD,GNB1,HES4,ISG15,KLHL17,MIB2,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,PERM1,PEX10,PLEKHN1,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.DM.A28M.01A	1	762043	6100571	681	0.1886	NEUTRAL	NA	78	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KCNAB2,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NPHP4,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AG.A016.01A	1	762043	6630928	344	0.0394	NEUTRAL	NA	91	"ACAP3,ACOT7,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DVL1,ESPN,FAM132A,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES4,HES5,ICMT,ISG15,KCNAB2,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NOL9,NPHP4,PANK4,PERM1,PEX10,PLCH2,PLEKHG5,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF207,RNF223,RPL22,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R1,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF25,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.3980.01A	1	762043	16268527	1679	-0.1319	NEUTRAL	NA	210	Too-Many
TCGA.A6.3810.01A	1	762043	16270784	1840	-0.3837	NEUTRAL	NA	210	Too-Many
TCGA.AA.3522	1	765268	18201632	4674	-0.3837	NEUTRAL	NA	237	Too-Many
TCGA.AA.A01X	1	765268	145013753	35672	-0.3677	NEUTRAL	NA	1057	Too-Many
TCGA.A6.6651	1	765268	249198691	69610	0	NEUTRAL	NA	1996	Too-Many
TCGA.DM.A28K	1	777121	144849543	35630	0.001	NEUTRAL	NA	1056	Too-Many
TCGA.AG.A01W.01A	1	791758	1246202	97	-0.0865	NEUTRAL	NA	20	"ACAP3,AGRN,B3GALT6,C1orf159,FAM132A,HES4,ISG15,KLHL17,NOC2L,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.AG.3611.01A	1	861256	6638692	458	0.0053	NEUTRAL	NA	91	"ACAP3,ACOT7,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DVL1,ESPN,FAM132A,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES4,HES5,ICMT,ISG15,KCNAB2,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NOL9,NPHP4,PANK4,PERM1,PEX10,PLCH2,PLEKHG5,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF207,RNF223,RPL22,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R1,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF25,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.A00K.01A	1	861256	116310882	7790	-0.3414	NEUTRAL	NA	1016	Too-Many
TCGA.AA.A02K.01A	1	861272	24766611	2806	-0.0425	NEUTRAL	NA	319	Too-Many
TCGA.AA.A00D.01A	1	866346	11189753	795	-0.236	NEUTRAL	NA	135	Too-Many
TCGA.AA.A00J.01A	1	866346	249210793	15241	0.043	NEUTRAL	NA	1997	Too-Many
TCGA.AG.3605.01A	1	876473	877479	2	-0.0219	NEUTRAL	NA	1	SAMD11
TCGA.AA.A017.01A	1	879056	15844587	1013	-0.143	NEUTRAL	NA	199	Too-Many
TCGA.AG.A01N.01A	1	879056	19490695	1552	-0.2642	NEUTRAL	NA	244	Too-Many
TCGA.AG.A00H.01A	1	879056	100527344	7123	-0.163	NEUTRAL	NA	890	Too-Many
TCGA.AA.A00O.01A	1	880861	153934659	9328	-0.0534	NEUTRAL	NA	1237	Too-Many
TCGA.AF.3914.01A	1	887353	6420570	497	-0.1292	NEUTRAL	NA	84	"ACAP3,ACOT7,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,GPR153,HES3,HES4,HES5,ICMT,ISG15,KCNAB2,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NPHP4,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF207,RNF223,RPL22,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.A01Q.01A	1	894261	901857	7	0.2794	NEUTRAL	NA	2	"KLHL17,NOC2L"
TCGA.AA.A01Q.01A	1	934452	1163841	42	0.1585	NEUTRAL	NA	9	"AGRN,C1orf159,HES4,ISG15,RNF223,SDF4,TNFRSF18,TNFRSF4,TTLL10"
TCGA.AA.3872	1	949607	4089612	491	0.1511	NEUTRAL	NA	69	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES5,ISG15,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.3488	1	990416	49385465	13188	-0.3695	NEUTRAL	NA	645	Too-Many
TCGA.AA.3666	1	990838	27703044	7473	-0.3572	NEUTRAL	NA	366	Too-Many
TCGA.AG.3901	1	1039097	4236981	543	-0.0318	NEUTRAL	NA	66	"ACAP3,ACTRT2,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES5,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,PUSL1,RER1,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AY.A71X	1	1089698	55992809	14708	-0.0933	NEUTRAL	NA	700	Too-Many
TCGA.AA.3930.01A	1	1103198	1203205	28	0.0123	NEUTRAL	NA	7	"B3GALT6,FAM132A,SDF4,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.AM.5820	1	1186501	3705984	383	0.0527	NEUTRAL	NA	56	"ACAP3,ACTRT2,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM213B,GABRD,GNB1,HES5,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,PUSL1,RER1,SCNN1D,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TP73,TPRG1L,TTC34,UBE2J2,VWA1,WRAP73"
TCGA.AA.A00N.01A	1	1203205	1323133	68	-0.447	NEUTRAL	NA	11	"ACAP3,AURKAIP1,CCNL2,CPSF3L,CPTP,DVL1,MXRA8,PUSL1,SCNN1D,TAS1R3,UBE2J2"
TCGA.AG.3909.01A	1	1222157	1322670	18	0.0119	NEUTRAL	NA	10	"ACAP3,AURKAIP1,CCNL2,CPSF3L,CPTP,DVL1,MXRA8,PUSL1,SCNN1D,TAS1R3"
TCGA.AA.A00Q.01A	1	1222482	1289390	25	0.1557	NEUTRAL	NA	8	"ACAP3,CPSF3L,CPTP,DVL1,MXRA8,PUSL1,SCNN1D,TAS1R3"
TCGA.AA.A01Q.01A	1	1255792	1293811	18	0.1443	NEUTRAL	NA	5	"CPSF3L,CPTP,DVL1,MXRA8,TAS1R3"
TCGA.AG.A01W.01A	1	1263173	1279085	6	-0.0281	NEUTRAL	NA	3	"CPTP,DVL1,TAS1R3"
TCGA.AA.A00Q.01A	1	1291985	1342292	17	-0.5129	NEUTRAL	NA	4	"AURKAIP1,CCNL2,MRPL20,MXRA8"
TCGA.D5.5537	1	1311715	6651727	1629	-0.029	NEUTRAL	NA	67	"ACOT7,ACTRT2,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,DFFB,ESPN,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES5,ICMT,KCNAB2,KLHL21,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,NADK,NOL9,NPHP4,PANK4,PEX10,PLCH2,PLEKHG5,PRDM16,PRKCZ,RER1,RNF207,RPL22,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R1,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF25,TP73,TPRG1L,TTC34,VWA1,WRAP73,ZBTB48"
TCGA.AA.3930.01A	1	1323133	1573097	66	-0.1539	NEUTRAL	NA	14	"ANKRD65,ATAD3A,ATAD3B,ATAD3C,C1orf233,CCNL2,CDK11B,MIB2,MMP23B,MRPL20,SSU72,TMEM240,TMEM88B,VWA1"
TCGA.A6.6653	1	1333435	1823921	24	-0.0271	NEUTRAL	NA	19	"ANKRD65,ATAD3A,ATAD3B,ATAD3C,C1orf233,CCNL2,CDK11A,CDK11B,GNB1,MIB2,MMP23B,MRPL20,NADK,SLC35E2,SLC35E2B,SSU72,TMEM240,TMEM88B,VWA1"
TCGA.AA.A01Q.01A	1	1342292	1421463	11	0.215	NEUTRAL	NA	6	"ANKRD65,ATAD3B,ATAD3C,MRPL20,TMEM88B,VWA1"
TCGA.AA.A00N.01A	1	1342292	1571997	72	-0.4164	NEUTRAL	NA	13	"ANKRD65,ATAD3A,ATAD3B,ATAD3C,C1orf233,CDK11B,MIB2,MMP23B,MRPL20,SSU72,TMEM240,TMEM88B,VWA1"
TCGA.AA.A00Q.01A	1	1372258	1460549	16	0.2221	NEUTRAL	NA	4	"ATAD3A,ATAD3B,ATAD3C,VWA1"
TCGA.AG.A01W.01A	1	1375878	1445348	31	-0.4765	NEUTRAL	NA	3	"ATAD3B,ATAD3C,VWA1"
TCGA.AG.3909.01A	1	1387403	2319651	125	-0.4159	NEUTRAL	NA	22	"ATAD3A,ATAD3B,ATAD3C,C1orf233,C1orf86,CALML6,CDK11A,CDK11B,CFAP74,GABRD,GNB1,MIB2,MMP23B,MORN1,NADK,PRKCZ,SKI,SLC35E2,SLC35E2B,SSU72,TMEM240,TMEM52"
TCGA.AG.A01W.01A	1	1445730	1563674	27	0.1172	NEUTRAL	NA	5	"ATAD3A,C1orf233,MIB2,SSU72,TMEM240"
TCGA.AH.6549.01A	1	1550926	19415213	1925	0.133	NEUTRAL	NA	207	Too-Many
TCGA.AA.3930.01A	1	1573810	1756766	47	0.2572	NEUTRAL	NA	6	"CDK11A,CDK11B,GNB1,NADK,SLC35E2,SLC35E2B"
TCGA.AA.A010.01A	1	1597181	1606875	6	-0.0156	NEUTRAL	NA	2	"CDK11B,SLC35E2B"
TCGA.AG.4009.01A	1	1647748	3519008	149	-0.2908	NEUTRAL	NA	26	"ACTRT2,ARHGEF16,C1orf86,CALML6,CDK11A,CDK11B,CFAP74,FAM213B,GABRD,GNB1,HES5,MEGF6,MMEL1,MORN1,NADK,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,RER1,SKI,SLC35E2,TMEM52,TNFRSF14,TTC34"
TCGA.AG.A01W.01A	1	1655959	1891923	51	-0.2975	NEUTRAL	NA	6	"CALML6,CFAP74,GNB1,NADK,SLC35E2,TMEM52"
TCGA.AA.3862.01A	1	1685483	11808441	960	-0.2068	NEUTRAL	NA	101	Too-Many
TCGA.AA.A01Q.01A	1	1721793	1847072	9	0.0365	NEUTRAL	NA	2	"CALML6,GNB1"
TCGA.AA.A00Q.01A	1	1846632	1960991	14	0.1334	NEUTRAL	NA	4	"CALML6,CFAP74,GABRD,TMEM52"
TCGA.AA.3930.01A	1	1847072	3647983	200	-0.2464	NEUTRAL	NA	24	"ACTRT2,ARHGEF16,C1orf86,CALML6,CFAP74,FAM213B,GABRD,HES5,MEGF6,MMEL1,MORN1,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,RER1,SKI,TMEM52,TNFRSF14,TP73,TPRG1L,TTC34,WRAP73"
TCGA.AG.A01W.01A	1	1893244	3373546	148	0.0452	NEUTRAL	NA	18	"ACTRT2,ARHGEF16,C1orf86,CFAP74,FAM213B,GABRD,HES5,MMEL1,MORN1,PANK4,PEX10,PLCH2,PRDM16,PRKCZ,RER1,SKI,TNFRSF14,TTC34"
TCGA.AA.A00Q.01A	1	1986849	2938214	85	-0.3445	NEUTRAL	NA	14	"ACTRT2,C1orf86,FAM213B,HES5,MMEL1,MORN1,PANK4,PEX10,PLCH2,PRKCZ,RER1,SKI,TNFRSF14,TTC34"
TCGA.AA.A010.01A	1	2066645	2103456	8	-0.0989	NEUTRAL	NA	1	PRKCZ
TCGA.AA.3856	1	2077408	2449710	56	-0.2304	NEUTRAL	NA	8	"C1orf86,MORN1,PANK4,PEX10,PLCH2,PRKCZ,RER1,SKI"
TCGA.AA.A01Q.01A	1	2267847	2316365	7	-0.202	NEUTRAL	NA	1	MORN1
TCGA.CA.5254	1	2280422	144832254	35497	-0.4819	NEUTRAL	NA	1004	Too-Many
TCGA.AH.6644	1	2329563	27437216	7303	-0.4427	NEUTRAL	NA	315	Too-Many
TCGA.AG.3909.01A	1	2333486	3322019	56	-0.2418	NEUTRAL	NA	11	"ACTRT2,FAM213B,HES5,MMEL1,PANK4,PEX10,PLCH2,PRDM16,RER1,TNFRSF14,TTC34"
TCGA.AG.3891.01A	1	2339840	3519008	77	-0.1901	NEUTRAL	NA	12	"ACTRT2,ARHGEF16,FAM213B,HES5,MEGF6,MMEL1,PANK4,PEX10,PLCH2,PRDM16,TNFRSF14,TTC34"
TCGA.AF.2689	1	2430616	22814288	6230	-0.0154	NEUTRAL	NA	232	Too-Many
TCGA.AA.A01Q.01A	1	2444287	2492864	18	0.0099	NEUTRAL	NA	3	"HES5,PANK4,TNFRSF14"
TCGA.AA.3856	1	2450393	2553623	15	0.3208	NEUTRAL	NA	5	"FAM213B,HES5,MMEL1,PANK4,TNFRSF14"
TCGA.AA.A00N.01A	1	2460866	2518258	11	-0.1414	NEUTRAL	NA	3	"FAM213B,HES5,TNFRSF14"
TCGA.AA.A010.01A	1	2488055	3342128	51	-0.4806	NEUTRAL	NA	6	"ACTRT2,FAM213B,MMEL1,PRDM16,TNFRSF14,TTC34"
TCGA.DC.6160.01A	1	2516516	115404557	9168	-0.4942	NEUTRAL	NA	952	Too-Many
TCGA.AA.A01Q.01A	1	2536930	3327920	10	-0.2208	NEUTRAL	NA	4	"ACTRT2,MMEL1,PRDM16,TTC34"
TCGA.AA.3856	1	2553757	249198691	69799	-0.003	NEUTRAL	NA	1936	Too-Many
TCGA.A6.6653	1	2735819	6009295	1386	-0.092	NEUTRAL	NA	15	"ACTRT2,AJAP1,ARHGEF16,C1orf174,CCDC27,CEP104,DFFB,LRRC47,MEGF6,NPHP4,PRDM16,SMIM1,TP73,TPRG1L,WRAP73"
TCGA.G4.6310	1	3222469	5545278	1001	-0.0503	NEUTRAL	NA	13	"AJAP1,ARHGEF16,C1orf174,CCDC27,CEP104,DFFB,LRRC47,MEGF6,PRDM16,SMIM1,TP73,TPRG1L,WRAP73"
TCGA.AA.A00Q.01A	1	3327920	3645844	28	0.0461	NEUTRAL	NA	6	"ARHGEF16,MEGF6,PRDM16,TP73,TPRG1L,WRAP73"
TCGA.AA.3660	1	3368130	150764623	35937	-0.0038	NEUTRAL	NA	1062	Too-Many
TCGA.AG.A01W.01A	1	3375245	9593145	470	-0.3006	NEUTRAL	NA	48	"ACOT7,AJAP1,ARHGEF16,C1orf174,CA6,CAMTA1,CCDC27,CEP104,CHD5,DFFB,DNAJC11,ENO1,ERRFI1,ESPN,GPR153,GPR157,H6PD,HES2,HES3,ICMT,KCNAB2,KLHL21,LRRC47,MEGF6,NOL9,NPHP4,PARK7,PER3,PHF13,PLEKHG5,RERE,RNF207,RPL22,SLC2A5,SLC2A7,SLC45A1,SMIM1,SPSB1,TAS1R1,THAP3,TNFRSF25,TNFRSF9,TP73,TPRG1L,UTS2,VAMP3,WRAP73,ZBTB48"
TCGA.AA.A010.01A	1	3394940	3541608	37	-0.4685	NEUTRAL	NA	3	"ARHGEF16,MEGF6,TPRG1L"
TCGA.AA.A00N.01A	1	3407032	3541608	33	-0.1561	NEUTRAL	NA	2	"MEGF6,TPRG1L"
TCGA.AG.3605.01A	1	3417170	35452663	80	0.2502	NEUTRAL	NA	402	Too-Many
TCGA.AG.3891.01A	1	3542240	3638547	15	0.3494	NEUTRAL	NA	3	"TP73,TPRG1L,WRAP73"
TCGA.AA.A01Q.01A	1	3566442	3679625	21	0.0274	NEUTRAL	NA	3	"CCDC27,TP73,WRAP73"
TCGA.AA.A010.01A	1	3566442	3747581	47	-0.4824	NEUTRAL	NA	6	"CCDC27,CEP104,LRRC47,SMIM1,TP73,WRAP73"
TCGA.AG.3891.01A	1	3659654	3761430	34	0.1628	NEUTRAL	NA	4	"CCDC27,CEP104,LRRC47,SMIM1"
TCGA.AA.3930.01A	1	3659654	6695661	242	0.0913	NEUTRAL	NA	27	"ACOT7,AJAP1,C1orf174,CCDC27,CEP104,CHD5,DFFB,DNAJC11,ESPN,GPR153,HES2,HES3,ICMT,KCNAB2,KLHL21,LRRC47,NOL9,NPHP4,PHF13,PLEKHG5,RNF207,RPL22,SMIM1,TAS1R1,THAP3,TNFRSF25,ZBTB48"
TCGA.A6.3808.01A	1	3700533	6150396	79	-0.2124	NEUTRAL	NA	7	"AJAP1,C1orf174,CEP104,DFFB,KCNAB2,LRRC47,NPHP4"
TCGA.AM.5820	1	3714032	5785134	1041	-0.4192	NEUTRAL	NA	4	"AJAP1,C1orf174,CEP104,DFFB"
TCGA.AG.4009.01A	1	3739725	3753839	11	-0.0781	NEUTRAL	NA	1	CEP104
TCGA.AA.A01D.01A	1	3745783	26520241	1848	-0.0959	NEUTRAL	NA	274	Too-Many
TCGA.AG.4009.01A	1	3755508	3788986	12	-0.3929	NEUTRAL	NA	2	"CEP104,DFFB"
TCGA.AG.3906.01A	1	3761430	3788986	10	0.1118	NEUTRAL	NA	2	"CEP104,DFFB"
TCGA.AG.3891.01A	1	3782327	5923298	13	0.1322	NEUTRAL	NA	4	"AJAP1,C1orf174,DFFB,NPHP4"
TCGA.AG.3906.01A	1	3800049	5927762	15	-0.479	NEUTRAL	NA	4	"AJAP1,C1orf174,DFFB,NPHP4"
TCGA.AG.4009.01A	1	3800049	6228162	72	0.2968	NEUTRAL	NA	6	"AJAP1,C1orf174,CHD5,DFFB,KCNAB2,NPHP4"
TCGA.AA.A00N.01A	1	3816646	5965304	22	-0.0752	NEUTRAL	NA	3	"AJAP1,C1orf174,NPHP4"
TCGA.AA.3872	1	4111740	5245817	666	0.0106	NEUTRAL	NA	1	AJAP1
TCGA.AG.3901	1	4237983	20943280	5284	-0.3502	NEUTRAL	NA	194	Too-Many
TCGA.G4.6628	1	4409495	4652511	174	-0.5064	NEUTRAL	NA	0	None
TCGA.AG.A026	1	4424144	7944263	1419	-0.1188	NEUTRAL	NA	25	"ACOT7,AJAP1,CAMTA1,CHD5,DNAJC11,ESPN,GPR153,HES2,HES3,ICMT,KCNAB2,KLHL21,NOL9,NPHP4,PER3,PHF13,PLEKHG5,RNF207,RPL22,TAS1R1,THAP3,TNFRSF25,UTS2,VAMP3,ZBTB48"
TCGA.AA.3860	1	4424144	19824007	4767	-0.005	NEUTRAL	NA	175	Too-Many
TCGA.G4.6628	1	4653092	249198691	68914	0.0057	NEUTRAL	NA	1921	Too-Many
TCGA.F4.6569	1	4662531	10613166	1827	-0.4298	NEUTRAL	NA	53	"ACOT7,AJAP1,APITD1,APITD1-CORT,CA6,CAMTA1,CHD5,CLSTN1,CORT,CTNNBIP1,DFFA,DNAJC11,ENO1,ERRFI1,ESPN,GPR153,GPR157,H6PD,HES2,HES3,ICMT,KCNAB2,KIF1B,KLHL21,LZIC,NMNAT1,NOL9,NPHP4,PARK7,PER3,PEX14,PGD,PHF13,PIK3CD,PLEKHG5,RBP7,RERE,RNF207,RPL22,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SPSB1,TAS1R1,THAP3,TMEM201,TNFRSF25,TNFRSF9,UBE4B,UTS2,VAMP3,ZBTB48"
TCGA.DM.A28H	1	4754056	4859307	58	0.2858	NEUTRAL	NA	1	AJAP1
TCGA.AA.A010.01A	1	4771911	5933257	12	0.2293	NEUTRAL	NA	2	"AJAP1,NPHP4"
TCGA.A6.5665	1	4799199	249198691	68869	-0.0131	NEUTRAL	NA	1921	Too-Many
TCGA.AG.3612	1	4851208	176541124	43783	-0.0486	NEUTRAL	NA	1460	Too-Many
TCGA.DM.A28H	1	4867849	4891602	11	0.2673	NEUTRAL	NA	0	None
TCGA.AG.3727	1	5001646	5012354	20	0.3126	NEUTRAL	NA	0	None
TCGA.AG.3727	1	5015466	5281674	130	-0.071	NEUTRAL	NA	0	None
TCGA.DM.A28H	1	5112056	5475331	171	0.3342	NEUTRAL	NA	0	None
TCGA.NH.A5IV	1	5112056	249198691	68608	0.0074	NEUTRAL	NA	1920	Too-Many
TCGA.AA.3872	1	5250496	38619027	9081	0.0526	NEUTRAL	NA	435	Too-Many
TCGA.AM.5820	1	5790497	5830966	20	0.0476	NEUTRAL	NA	0	None
TCGA.CM.4752	1	5806348	12339618	1650	0.1628	NEUTRAL	NA	80	"ACOT7,AGTRAP,ANGPTL7,APITD1,APITD1-CORT,C1orf127,C1orf167,CA6,CAMTA1,CASZ1,CHD5,CLCN6,CLSTN1,CORT,CTNNBIP1,DFFA,DNAJC11,DRAXIN,ENO1,ERRFI1,ESPN,EXOSC10,FBXO2,FBXO44,FBXO6,GPR153,GPR157,H6PD,HES2,HES3,ICMT,KCNAB2,KIAA2013,KIF1B,KLHL21,LZIC,MAD2L2,MASP2,MFN2,MIIP,MTHFR,MTOR,NMNAT1,NOL9,NPHP4,NPPA,NPPB,PARK7,PER3,PEX14,PGD,PHF13,PIK3CD,PLEKHG5,PLOD1,PTCHD2,RBP7,RERE,RNF207,RPL22,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SPSB1,SRM,TARDBP,TAS1R1,THAP3,TMEM201,TNFRSF1B,TNFRSF25,TNFRSF8,TNFRSF9,UBE4B,UBIAD1,UTS2,VAMP3,VPS13D,ZBTB48"
TCGA.AM.5820	1	5880465	5957588	44	0.1175	NEUTRAL	NA	1	NPHP4
TCGA.AG.3891.01A	1	5923908	6194726	56	-0.2586	NEUTRAL	NA	3	"CHD5,KCNAB2,NPHP4"
TCGA.AA.A01Q.01A	1	5925115	5969143	8	0.324	NEUTRAL	NA	1	NPHP4
TCGA.AM.5820	1	5957724	6049057	34	-0.3707	NEUTRAL	NA	1	NPHP4
TCGA.AA.A010.01A	1	6021825	6209269	50	0.0069	NEUTRAL	NA	3	"CHD5,KCNAB2,NPHP4"
TCGA.AM.5820	1	6056167	6572331	91	-0.0368	NEUTRAL	NA	12	"ACOT7,CHD5,ESPN,GPR153,HES2,HES3,ICMT,KCNAB2,PLEKHG5,RNF207,RPL22,TNFRSF25"
TCGA.F4.6461	1	6117170	27068201	5816	-0.0441	NEUTRAL	NA	280	Too-Many
TCGA.AG.3891.01A	1	6195243	6219344	13	0.1638	NEUTRAL	NA	1	CHD5
TCGA.AG.3906.01A	1	6208877	6285118	19	-0.3285	NEUTRAL	NA	4	"CHD5,ICMT,RNF207,RPL22"
TCGA.AZ.4684.01A	1	6219344	6273154	17	-0.239	NEUTRAL	NA	3	"CHD5,RNF207,RPL22"
TCGA.AA.A00Q.01A	1	6259526	6615433	65	-0.2982	NEUTRAL	NA	12	"ACOT7,ESPN,GPR153,HES2,HES3,ICMT,NOL9,PLEKHG5,RNF207,RPL22,TAS1R1,TNFRSF25"
TCGA.A6.6653	1	6291809	21687853	4417	-0.0285	NEUTRAL	NA	195	Too-Many
TCGA.AG.3909.01A	1	6311370	6615433	50	-0.2837	NEUTRAL	NA	8	"ACOT7,ESPN,GPR153,HES2,NOL9,PLEKHG5,TAS1R1,TNFRSF25"
TCGA.AA.A024.01A	1	6311370	249210793	16544	0.012	NEUTRAL	NA	1914	Too-Many
TCGA.AG.3906.01A	1	6341122	6393495	5	0.1643	NEUTRAL	NA	1	ACOT7
TCGA.AG.4009.01A	1	6341122	6420570	9	0.1297	NEUTRAL	NA	1	ACOT7
TCGA.AA.A010.01A	1	6378509	6484985	13	-0.0158	NEUTRAL	NA	3	"ACOT7,ESPN,HES2"
TCGA.AG.3891.01A	1	6387307	9627283	233	0.1976	NEUTRAL	NA	29	"ACOT7,CA6,CAMTA1,DNAJC11,ENO1,ERRFI1,ESPN,GPR157,H6PD,HES2,KLHL21,NOL9,PARK7,PER3,PHF13,PLEKHG5,RERE,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SPSB1,TAS1R1,THAP3,TNFRSF25,TNFRSF9,UTS2,VAMP3,ZBTB48"
TCGA.AG.3906.01A	1	6399474	6488239	5	-0.4603	NEUTRAL	NA	3	"ACOT7,ESPN,HES2"
TCGA.AG.3906.01A	1	6504489	6537552	15	0.2779	NEUTRAL	NA	3	"ESPN,PLEKHG5,TNFRSF25"
TCGA.AF.3914.01A	1	6535476	27682142	2353	0.0103	NEUTRAL	NA	284	Too-Many
TCGA.AG.4009.01A	1	6556490	6659099	27	-0.0532	NEUTRAL	NA	5	"KLHL21,NOL9,PLEKHG5,TAS1R1,ZBTB48"
TCGA.AA.3982	1	6568949	7818317	395	0.348	NEUTRAL	NA	9	"CAMTA1,DNAJC11,KLHL21,NOL9,PHF13,PLEKHG5,TAS1R1,THAP3,ZBTB48"
TCGA.AG.3906.01A	1	6579441	9075129	173	-0.49	NEUTRAL	NA	20	"CA6,CAMTA1,DNAJC11,ENO1,ERRFI1,KLHL21,NOL9,PARK7,PER3,PHF13,PLEKHG5,RERE,SLC2A7,SLC45A1,TAS1R1,THAP3,TNFRSF9,UTS2,VAMP3,ZBTB48"
TCGA.AA.A00L.01A	1	6585863	6713922	46	0.0298	NEUTRAL	NA	7	"DNAJC11,KLHL21,NOL9,PHF13,TAS1R1,THAP3,ZBTB48"
TCGA.AG.3611.01A	1	6640653	6738391	32	0.3305	NEUTRAL	NA	5	"DNAJC11,KLHL21,PHF13,THAP3,ZBTB48"
TCGA.AG.A016.01A	1	6653385	29633553	2386	-0.0698	NEUTRAL	NA	313	Too-Many
TCGA.AA.A00Z.01A	1	6661909	37961402	71	0.3341	NEUTRAL	NA	403	Too-Many
TCGA.AG.4009.01A	1	6690303	7826434	42	0.0084	NEUTRAL	NA	3	"CAMTA1,DNAJC11,THAP3"
TCGA.AA.3930.01A	1	6698290	9670572	178	0.1771	NEUTRAL	NA	19	"CA6,CAMTA1,DNAJC11,ENO1,ERRFI1,GPR157,H6PD,PARK7,PER3,RERE,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SPSB1,TMEM201,TNFRSF9,UTS2,VAMP3"
TCGA.AA.A00N.01A	1	6727717	7805863	23	0.0606	NEUTRAL	NA	2	"CAMTA1,DNAJC11"
TCGA.AG.3909.01A	1	6727717	7815625	25	-0.1363	NEUTRAL	NA	2	"CAMTA1,DNAJC11"
TCGA.AA.A00L.01A	1	6727717	17264086	918	-0.3135	NEUTRAL	NA	131	Too-Many
TCGA.AG.3611.01A	1	6740921	8925304	106	0.0176	NEUTRAL	NA	11	"CAMTA1,DNAJC11,ENO1,ERRFI1,PARK7,PER3,RERE,SLC45A1,TNFRSF9,UTS2,VAMP3"
TCGA.AM.5820	1	7394817	7753131	132	-0.0884	NEUTRAL	NA	1	CAMTA1
TCGA.AA.A01Q.01A	1	7792477	10075769	204	-0.11	NEUTRAL	NA	24	"CA6,CAMTA1,CLSTN1,CTNNBIP1,ENO1,ERRFI1,GPR157,H6PD,LZIC,NMNAT1,PARK7,PER3,PIK3CD,RBP7,RERE,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SPSB1,TMEM201,TNFRSF9,UTS2,VAMP3"
TCGA.AA.3982	1	7825310	20567938	3646	0.323	NEUTRAL	NA	168	Too-Many
TCGA.AG.4009.01A	1	7858538	7879298	8	-0.2481	NEUTRAL	NA	1	PER3
TCGA.AA.A010.01A	1	7868904	7880480	6	-0.1059	NEUTRAL	NA	1	PER3
TCGA.AA.A00N.01A	1	7869905	7995021	21	-0.1515	NEUTRAL	NA	3	"PER3,TNFRSF9,UTS2"
TCGA.AG.4009.01A	1	7880153	7980843	14	0.2038	NEUTRAL	NA	3	"PER3,TNFRSF9,UTS2"
TCGA.AA.A010.01A	1	7980843	8075308	15	-0.2852	NEUTRAL	NA	3	"ERRFI1,PARK7,TNFRSF9"
TCGA.AG.4009.01A	1	7993174	8385861	17	-0.2074	NEUTRAL	NA	4	"ERRFI1,PARK7,SLC45A1,TNFRSF9"
TCGA.A6.3808.01A	1	8030888	12091725	554	-0.3783	NEUTRAL	NA	52	"AGTRAP,ANGPTL7,APITD1,APITD1-CORT,C1orf127,C1orf167,CA6,CASZ1,CLCN6,CLSTN1,CORT,CTNNBIP1,DFFA,DRAXIN,ENO1,ERRFI1,EXOSC10,FBXO2,FBXO44,FBXO6,GPR157,H6PD,KIAA2013,KIF1B,LZIC,MAD2L2,MASP2,MFN2,MIIP,MTHFR,MTOR,NMNAT1,NPPA,NPPB,PARK7,PEX14,PGD,PIK3CD,PLOD1,PTCHD2,RBP7,RERE,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SPSB1,SRM,TARDBP,TMEM201,UBE4B,UBIAD1"
TCGA.AA.A02E.01A	1	8030888	36927629	2860	-0.276	NEUTRAL	NA	390	Too-Many
TCGA.G4.6310	1	8224281	249198691	67711	0	NEUTRAL	NA	1893	Too-Many
TCGA.AA.3858	1	8355466	9509820	293	0.2916	NEUTRAL	NA	9	"CA6,ENO1,GPR157,H6PD,RERE,SLC2A5,SLC2A7,SLC45A1,SPSB1"
TCGA.AG.4009.01A	1	8390259	8425824	16	0.2656	NEUTRAL	NA	2	"RERE,SLC45A1"
TCGA.AG.3909.01A	1	8424752	10093671	124	-0.2008	NEUTRAL	NA	17	"CA6,CLSTN1,CTNNBIP1,ENO1,GPR157,H6PD,LZIC,NMNAT1,PIK3CD,RBP7,RERE,SLC25A33,SLC2A5,SLC2A7,SPSB1,TMEM201,UBE4B"
TCGA.CI.6623	1	8497306	32816270	6524	-0.1152	NEUTRAL	NA	330	Too-Many
TCGA.AG.4009.01A	1	8585733	8684306	6	0.1361	NEUTRAL	NA	1	RERE
TCGA.AG.A00C.01A	1	8585733	9086303	37	-0.0772	NEUTRAL	NA	4	"CA6,ENO1,RERE,SLC2A7"
TCGA.AA.A00N.01A	1	8585733	9931988	114	-0.0494	NEUTRAL	NA	13	"CA6,CLSTN1,CTNNBIP1,ENO1,GPR157,H6PD,PIK3CD,RERE,SLC25A33,SLC2A5,SLC2A7,SPSB1,TMEM201"
TCGA.AA.A010.01A	1	8616486	8921356	6	0.2417	NEUTRAL	NA	2	"ENO1,RERE"
TCGA.AG.4009.01A	1	8716044	8934828	12	-0.3479	NEUTRAL	NA	2	"ENO1,RERE"
TCGA.AG.3599	1	8726720	249198691	67591	0.0069	NEUTRAL	NA	1892	Too-Many
TCGA.CM.4750.01A	1	8923911	103343548	7692	-0.121	NEUTRAL	NA	799	Too-Many
TCGA.AG.3611.01A	1	8926288	9099563	29	0.3063	NEUTRAL	NA	4	"CA6,ENO1,SLC2A5,SLC2A7"
TCGA.AA.3667	1	8931362	23238022	4232	0.0835	NEUTRAL	NA	187	Too-Many
TCGA.CI.6621	1	8968999	9357959	129	0.0822	NEUTRAL	NA	6	"CA6,GPR157,H6PD,SLC2A5,SLC2A7,SPSB1"
TCGA.AG.4009.01A	1	9005895	9086303	17	0.2784	NEUTRAL	NA	2	"CA6,SLC2A7"
TCGA.AG.3906.01A	1	9078230	9107621	8	0.2092	NEUTRAL	NA	2	"SLC2A5,SLC2A7"
TCGA.AG.3611.01A	1	9101628	9322066	13	-0.0725	NEUTRAL	NA	3	"GPR157,H6PD,SLC2A5"
TCGA.AG.3906.01A	1	9117456	9630269	16	-0.3694	NEUTRAL	NA	5	"GPR157,H6PD,SLC25A33,SLC2A5,SPSB1"
TCGA.AG.4009.01A	1	9118172	9427459	13	0.0142	NEUTRAL	NA	4	"GPR157,H6PD,SLC2A5,SPSB1"
TCGA.AA.A010.01A	1	9129482	9427459	12	-0.2318	NEUTRAL	NA	4	"GPR157,H6PD,SLC2A5,SPSB1"
TCGA.AG.A00C.01A	1	9164438	10431170	138	-0.1031	NEUTRAL	NA	13	"CLSTN1,CTNNBIP1,GPR157,H6PD,KIF1B,LZIC,NMNAT1,PIK3CD,RBP7,SLC25A33,SPSB1,TMEM201,UBE4B"
TCGA.A6.4107	1	9218720	120498249	33274	-0.2507	NEUTRAL	NA	936	Too-Many
TCGA.AG.3611.01A	1	9323600	10713385	174	0.234	NEUTRAL	NA	19	"APITD1,APITD1-CORT,CASZ1,CLSTN1,CORT,CTNNBIP1,DFFA,H6PD,KIF1B,LZIC,NMNAT1,PEX14,PGD,PIK3CD,RBP7,SLC25A33,SPSB1,TMEM201,UBE4B"
TCGA.CI.6621	1	9358242	13798032	795	-0.3667	NEUTRAL	NA	76	"AADACL3,AADACL4,AGTRAP,ANGPTL7,APITD1,APITD1-CORT,C1orf127,C1orf158,C1orf167,CASZ1,CLCN6,CLSTN1,CORT,CTNNBIP1,DFFA,DHRS3,DRAXIN,EXOSC10,FBXO2,FBXO44,FBXO6,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,KIAA2013,KIF1B,LOC101929983,LOC391003,LOC400736,LOC645382,LZIC,MAD2L2,MASP2,MFN2,MIIP,MTHFR,MTOR,NMNAT1,NPPA,NPPB,PEX14,PGD,PIK3CD,PLOD1,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PTCHD2,RBP7,SLC25A33,SPSB1,SRM,TARDBP,TMEM201,TNFRSF1B,TNFRSF8,UBE4B,UBIAD1,VPS13D"
TCGA.AG.3890	1	9498112	40883265	8342	-0.3329	NEUTRAL	NA	425	Too-Many
TCGA.AG.A01W.01A	1	9594361	9709504	20	0.188	NEUTRAL	NA	2	"SLC25A33,TMEM201"
TCGA.AG.4009.01A	1	9613656	9770465	14	-0.4233	NEUTRAL	NA	3	"PIK3CD,SLC25A33,TMEM201"
TCGA.AG.3891.01A	1	9656867	9931988	42	0.2454	NEUTRAL	NA	4	"CLSTN1,CTNNBIP1,PIK3CD,TMEM201"
TCGA.AA.3930.01A	1	9671764	9786916	22	-0.3	NEUTRAL	NA	2	"PIK3CD,TMEM201"
TCGA.AA.A010.01A	1	9775582	9931988	37	0.0644	NEUTRAL	NA	3	"CLSTN1,CTNNBIP1,PIK3CD"
TCGA.AG.4009.01A	1	9775582	10436553	119	0.1109	NEUTRAL	NA	8	"CLSTN1,CTNNBIP1,KIF1B,LZIC,NMNAT1,PIK3CD,RBP7,UBE4B"
TCGA.AA.3939.01A	1	9786916	38484689	3499	-0.1358	NEUTRAL	NA	396	Too-Many
TCGA.AA.3930.01A	1	9790565	10698961	145	0.227	NEUTRAL	NA	14	"APITD1,APITD1-CORT,CASZ1,CLSTN1,CORT,CTNNBIP1,DFFA,KIF1B,LZIC,NMNAT1,PEX14,PGD,RBP7,UBE4B"
TCGA.AG.3906.01A	1	9990386	10068194	12	0.0235	NEUTRAL	NA	3	"LZIC,NMNAT1,RBP7"
TCGA.AG.A01W.01A	1	10016227	10279506	45	-0.4308	NEUTRAL	NA	4	"KIF1B,NMNAT1,RBP7,UBE4B"
TCGA.AG.3891.01A	1	10075769	10521566	92	0.3522	NEUTRAL	NA	8	"APITD1,APITD1-CORT,CORT,DFFA,KIF1B,PGD,RBP7,UBE4B"
TCGA.AG.3906.01A	1	10075769	11116614	136	-0.511	NEUTRAL	NA	14	"APITD1,APITD1-CORT,C1orf127,CASZ1,CORT,DFFA,KIF1B,MASP2,PEX14,PGD,RBP7,SRM,TARDBP,UBE4B"
TCGA.AA.A01Q.01A	1	10093671	10459078	73	0.3132	NEUTRAL	NA	3	"KIF1B,PGD,UBE4B"
TCGA.CK.5914.01A	1	10132048	10425136	68	-0.2268	NEUTRAL	NA	2	"KIF1B,UBE4B"
TCGA.AG.3909.01A	1	10132048	10459078	72	0.2439	NEUTRAL	NA	3	"KIF1B,PGD,UBE4B"
TCGA.AG.A01W.01A	1	10279825	10286858	4	0.1276	NEUTRAL	NA	1	KIF1B
TCGA.AA.3858	1	10281683	11444183	261	0.3032	NEUTRAL	NA	16	"ANGPTL7,APITD1,APITD1-CORT,C1orf127,CASZ1,CORT,DFFA,EXOSC10,KIF1B,MASP2,MTOR,PEX14,PGD,SRM,TARDBP,UBIAD1"
TCGA.AA.A010.01A	1	10459637	10502310	16	-0.3985	NEUTRAL	NA	3	"APITD1,APITD1-CORT,PGD"
TCGA.AA.A01Q.01A	1	10459637	10689571	33	-0.1901	NEUTRAL	NA	6	"APITD1,APITD1-CORT,CORT,DFFA,PEX14,PGD"
TCGA.AG.4009.01A	1	10500337	10689571	18	0.3132	NEUTRAL	NA	5	"APITD1,APITD1-CORT,CORT,DFFA,PEX14"
TCGA.AA.A00N.01A	1	10510094	10678332	13	0.2649	NEUTRAL	NA	4	"APITD1-CORT,CORT,DFFA,PEX14"
TCGA.AG.3891.01A	1	10523044	11009634	29	-0.1068	NEUTRAL	NA	4	"C1orf127,CASZ1,DFFA,PEX14"
TCGA.AG.A00C.01A	1	10523044	11115798	46	0.0598	NEUTRAL	NA	7	"C1orf127,CASZ1,DFFA,MASP2,PEX14,SRM,TARDBP"
TCGA.AG.3909.01A	1	10532351	11188464	87	-0.4062	NEUTRAL	NA	9	"C1orf127,CASZ1,DFFA,EXOSC10,MASP2,MTOR,PEX14,SRM,TARDBP"
TCGA.RU.A8FL	1	10544546	189770704	46569	0.227	NEUTRAL	NA	1471	Too-Many
TCGA.F4.6569	1	10613559	249198691	67262	-0.0063	NEUTRAL	NA	1869	Too-Many
TCGA.AG.A036.01A	1	10636014	22045508	1394	-0.1326	NEUTRAL	NA	153	Too-Many
TCGA.AA.3930.01A	1	10699782	10718523	13	-0.366	NEUTRAL	NA	1	CASZ1
TCGA.AG.4009.01A	1	10699782	10725133	15	-0.2623	NEUTRAL	NA	1	CASZ1
TCGA.AG.3611.01A	1	10714438	10725133	7	-0.3141	NEUTRAL	NA	1	CASZ1
TCGA.AA.3930.01A	1	10719732	11094825	22	0.3323	NEUTRAL	NA	4	"C1orf127,CASZ1,MASP2,TARDBP"
TCGA.AA.A01Q.01A	1	10725133	11080446	12	-0.323	NEUTRAL	NA	3	"C1orf127,CASZ1,TARDBP"
TCGA.AA.A00N.01A	1	11007733	11024122	8	0.2129	NEUTRAL	NA	1	C1orf127
TCGA.AG.4009.01A	1	11007733	11094825	15	0.2282	NEUTRAL	NA	3	"C1orf127,MASP2,TARDBP"
TCGA.AG.3611.01A	1	11007733	13942323	352	0.1326	NEUTRAL	NA	60	"AADACL3,AADACL4,AGTRAP,ANGPTL7,C1orf127,C1orf158,C1orf167,CLCN6,DHRS3,DRAXIN,EXOSC10,FBXO2,FBXO44,FBXO6,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,KIAA2013,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,MAD2L2,MASP2,MFN2,MIIP,MTHFR,MTOR,NPPA,NPPB,PDPN,PLOD1,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PTCHD2,SRM,TARDBP,TNFRSF1B,TNFRSF8,UBIAD1,VPS13D"
TCGA.AG.A01W.01A	1	11025472	11041832	10	0.2661	NEUTRAL	NA	1	C1orf127
TCGA.AA.A01Q.01A	1	11082133	11115798	14	0.2198	NEUTRAL	NA	3	"MASP2,SRM,TARDBP"
TCGA.AG.3891.01A	1	11097719	11106960	6	-0.3367	NEUTRAL	NA	1	MASP2
TCGA.AG.4009.01A	1	11097719	11140793	21	-0.3397	NEUTRAL	NA	3	"EXOSC10,MASP2,SRM"
TCGA.AA.A00N.01A	1	11103396	11115798	7	0.3436	NEUTRAL	NA	2	"MASP2,SRM"
TCGA.AG.A01W.01A	1	11109215	11115673	9	-0.4892	NEUTRAL	NA	1	SRM
TCGA.AA.A01Q.01A	1	11116614	11169655	30	-0.1814	NEUTRAL	NA	3	"EXOSC10,MTOR,SRM"
TCGA.AG.A01W.01A	1	11116969	11662961	78	-0.1656	NEUTRAL	NA	6	"ANGPTL7,EXOSC10,MTOR,PTCHD2,SRM,UBIAD1"
TCGA.AA.3930.01A	1	11118806	11137383	12	-0.1167	NEUTRAL	NA	2	"EXOSC10,SRM"
TCGA.AG.3906.01A	1	11126690	11142703	14	0.1071	NEUTRAL	NA	1	EXOSC10
TCGA.AA.3930.01A	1	11139736	11188464	30	0.3111	NEUTRAL	NA	2	"EXOSC10,MTOR"
TCGA.AA.3679	1	11140442	144880108	32951	-0.0054	NEUTRAL	NA	924	Too-Many
TCGA.AG.4009.01A	1	11142703	11292451	56	0.1537	NEUTRAL	NA	3	"ANGPTL7,EXOSC10,MTOR"
TCGA.AA.A010.01A	1	11155793	11177006	12	0.0957	NEUTRAL	NA	2	"EXOSC10,MTOR"
TCGA.AG.A00C.01A	1	11172845	11290935	40	-0.2012	NEUTRAL	NA	2	"ANGPTL7,MTOR"
TCGA.AG.3891.01A	1	11172845	11918712	140	0.1757	NEUTRAL	NA	15	"AGTRAP,ANGPTL7,C1orf167,CLCN6,DRAXIN,FBXO2,FBXO44,FBXO6,MAD2L2,MTHFR,MTOR,NPPA,NPPB,PTCHD2,UBIAD1"
TCGA.AA.A00N.01A	1	11181253	11188871	9	0.342	NEUTRAL	NA	1	MTOR
TCGA.AA.A01Q.01A	1	11184508	11188871	7	-0.177	NEUTRAL	NA	1	MTOR
TCGA.AG.3909.01A	1	11188871	11298450	33	0.2788	NEUTRAL	NA	2	"ANGPTL7,MTOR"
TCGA.AA.A01Q.01A	1	11189753	11298450	32	0.29	NEUTRAL	NA	2	"ANGPTL7,MTOR"
TCGA.CK.5914.01A	1	11190534	11301559	33	0.1442	NEUTRAL	NA	2	"ANGPTL7,MTOR"
TCGA.AA.A01K.01A	1	11190534	26520241	1471	-0.2525	NEUTRAL	NA	212	Too-Many
TCGA.AA.3930.01A	1	11204657	11576011	45	0.1639	NEUTRAL	NA	4	"ANGPTL7,MTOR,PTCHD2,UBIAD1"
TCGA.AA.A00N.01A	1	11270819	11290935	7	0.3372	NEUTRAL	NA	1	MTOR
TCGA.AA.A010.01A	1	11270819	11596381	46	-0.048	NEUTRAL	NA	3	"MTOR,PTCHD2,UBIAD1"
TCGA.AA.A00D.01A	1	11270819	12091725	130	-0.3199	NEUTRAL	NA	18	"AGTRAP,C1orf167,CLCN6,DRAXIN,FBXO2,FBXO44,FBXO6,KIAA2013,MAD2L2,MFN2,MIIP,MTHFR,MTOR,NPPA,NPPB,PLOD1,PTCHD2,UBIAD1"
TCGA.AG.A00C.01A	1	11291320	11733297	44	0.2052	NEUTRAL	NA	6	"FBXO2,FBXO44,FBXO6,MTOR,PTCHD2,UBIAD1"
TCGA.AA.A01Q.01A	1	11300312	11318515	8	-0.3345	NEUTRAL	NA	1	MTOR
TCGA.AA.A01Q.01A	1	11319253	11596381	6	0.3574	NEUTRAL	NA	3	"MTOR,PTCHD2,UBIAD1"
TCGA.AG.4009.01A	1	11345694	11708704	20	0.0925	NEUTRAL	NA	3	"FBXO2,PTCHD2,UBIAD1"
TCGA.AA.3930.01A	1	11577472	11590917	9	-0.4263	NEUTRAL	NA	1	PTCHD2
TCGA.AA.3858	1	11586584	22640191	3413	-0.2384	NEUTRAL	NA	149	Too-Many
TCGA.AA.3930.01A	1	11591575	12020676	103	0.2491	NEUTRAL	NA	14	"AGTRAP,C1orf167,CLCN6,DRAXIN,FBXO2,FBXO44,FBXO6,KIAA2013,MAD2L2,MTHFR,NPPA,NPPB,PLOD1,PTCHD2"
TCGA.CA.6719	1	11665197	31975959	5689	-0.4229	NEUTRAL	NA	276	Too-Many
TCGA.AG.A01W.01A	1	11688922	11984361	77	-0.5007	NEUTRAL	NA	12	"AGTRAP,C1orf167,CLCN6,DRAXIN,FBXO2,FBXO44,FBXO6,KIAA2013,MAD2L2,MTHFR,NPPA,NPPB"
TCGA.AG.3906.01A	1	11708704	11731942	8	0.3288	NEUTRAL	NA	3	"FBXO2,FBXO44,FBXO6"
TCGA.AG.3906.01A	1	11733297	11918712	55	-0.4775	NEUTRAL	NA	9	"AGTRAP,C1orf167,CLCN6,DRAXIN,FBXO6,MAD2L2,MTHFR,NPPA,NPPB"
TCGA.AG.A00C.01A	1	11735654	15986392	332	0.0196	NEUTRAL	NA	62	"AADACL3,AADACL4,AGMAT,AGTRAP,C1orf158,C1orf167,C1orf195,CASP9,CELA2A,CELA2B,CLCN6,CTRC,DDI2,DHRS3,DNAJC16,DRAXIN,EFHD2,FHAD1,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,KAZN,KIAA2013,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,MAD2L2,MFN2,MIIP,MTHFR,NPPA,NPPB,PDPN,PLOD1,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PRDM2,RSC1A1,TMEM51,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AA.A010.01A	1	11766314	11918712	65	0.2318	NEUTRAL	NA	7	"AGTRAP,C1orf167,CLCN6,DRAXIN,MTHFR,NPPA,NPPB"
TCGA.AA.A01Q.01A	1	11766314	12057332	79	-0.2992	NEUTRAL	NA	10	"AGTRAP,C1orf167,CLCN6,DRAXIN,KIAA2013,MFN2,MTHFR,NPPA,NPPB,PLOD1"
TCGA.AG.4009.01A	1	11766314	12057332	70	0.2277	NEUTRAL	NA	10	"AGTRAP,C1orf167,CLCN6,DRAXIN,KIAA2013,MFN2,MTHFR,NPPA,NPPB,PLOD1"
TCGA.AA.A00N.01A	1	11775124	12034691	85	-0.1394	NEUTRAL	NA	9	"AGTRAP,C1orf167,CLCN6,DRAXIN,KIAA2013,MTHFR,NPPA,NPPB,PLOD1"
TCGA.AA.3861.01A	1	11848234	12835007	197	-0.115	NEUTRAL	NA	17	"AADACL3,AADACL4,C1orf158,C1orf167,CLCN6,DHRS3,KIAA2013,MFN2,MIIP,MTHFR,NPPA,NPPB,PLOD1,PRAMEF12,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AA.3862.01A	1	11852287	12835007	193	-0.2136	NEUTRAL	NA	16	"AADACL3,AADACL4,C1orf158,CLCN6,DHRS3,KIAA2013,MFN2,MIIP,MTHFR,NPPA,NPPB,PLOD1,PRAMEF12,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AG.A01W.01A	1	11986589	11994075	8	0.2531	NEUTRAL	NA	0	None
TCGA.AG.3891.01A	1	12004527	16053477	282	0.2095	NEUTRAL	NA	54	"AADACL3,AADACL4,AGMAT,C1orf158,C1orf195,CASP9,CELA2A,CELA2B,CTRC,DDI2,DHRS3,DNAJC16,EFHD2,FHAD1,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,KAZN,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,MFN2,MIIP,PDPN,PLEKHM2,PLOD1,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PRDM2,RSC1A1,TMEM51,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.CK.5914.01A	1	12009780	12034691	18	0.057	NEUTRAL	NA	1	PLOD1
TCGA.AA.A010.01A	1	12014822	12091725	37	0.2125	NEUTRAL	NA	3	"MFN2,MIIP,PLOD1"
TCGA.AA.3930.01A	1	12023542	12034691	9	-0.2302	NEUTRAL	NA	1	PLOD1
TCGA.AG.3906.01A	1	12052565	12081746	15	0.1239	NEUTRAL	NA	2	"MFN2,MIIP"
TCGA.AG.4009.01A	1	12089771	13942323	152	0.1062	NEUTRAL	NA	37	"AADACL3,AADACL4,C1orf158,DHRS3,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,MIIP,PDPN,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AA.A01Q.01A	1	12091725	12175593	9	0.3118	NEUTRAL	NA	2	"MIIP,TNFRSF8"
TCGA.CK.5914.01A	1	12091725	12198268	14	-0.0125	NEUTRAL	NA	2	"MIIP,TNFRSF8"
TCGA.A6.3808.01A	1	12123587	12780828	104	0.2607	NEUTRAL	NA	6	"AADACL3,AADACL4,DHRS3,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AG.A01W.01A	1	12124960	12177165	8	-0.2272	NEUTRAL	NA	1	TNFRSF8
TCGA.AA.A01Q.01A	1	12183289	12202295	6	0.0247	NEUTRAL	NA	1	TNFRSF8
TCGA.AA.A010.01A	1	12248802	12261973	8	0.247	NEUTRAL	NA	1	TNFRSF1B
TCGA.AG.A01W.01A	1	12255616	12775923	78	-0.2453	NEUTRAL	NA	4	"AADACL4,DHRS3,TNFRSF1B,VPS13D"
TCGA.AA.A010.01A	1	12266760	12339508	19	-0.3309	NEUTRAL	NA	2	"TNFRSF1B,VPS13D"
TCGA.AA.A01Q.01A	1	12266760	12568896	69	0.2931	NEUTRAL	NA	2	"TNFRSF1B,VPS13D"
TCGA.CK.5914.01A	1	12309267	12331000	11	0.3147	NEUTRAL	NA	1	VPS13D
TCGA.AG.3909.01A	1	12309267	12819225	83	0.1862	NEUTRAL	NA	5	"AADACL3,AADACL4,C1orf158,DHRS3,VPS13D"
TCGA.AA.3930.01A	1	12328716	12704535	63	0.0898	NEUTRAL	NA	2	"DHRS3,VPS13D"
TCGA.CK.5914.01A	1	12333023	12725941	64	-0.1006	NEUTRAL	NA	3	"AADACL4,DHRS3,VPS13D"
TCGA.CM.4752	1	12354306	29562069	4611	-0.3544	NEUTRAL	NA	249	Too-Many
TCGA.AA.A01Q.01A	1	12677119	16265164	171	0.0986	NEUTRAL	NA	53	"AADACL3,AADACL4,AGMAT,C1orf158,C1orf195,CASP9,CELA2A,CELA2B,CTRC,DDI2,DHRS3,DNAJC16,EFHD2,FBLIM1,FHAD1,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,KAZN,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PDPN,PLEKHM2,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PRDM2,RSC1A1,SLC25A34,SPEN,TMEM51,TMEM82,UQCRHL"
TCGA.AA.3930.01A	1	12711110	15754346	121	-0.2242	NEUTRAL	NA	38	"AADACL3,AADACL4,C1orf158,C1orf195,EFHD2,FHAD1,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,KAZN,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PDPN,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PRDM2,TMEM51"
TCGA.AA.A00Q.01A	1	12835007	13216712	19	-0.0355	NEUTRAL	NA	18	"HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,LOC101929983,LOC391003,PRAMEF1,PRAMEF11,PRAMEF12,PRAMEF2,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9"
TCGA.AY.5543	1	12882984	49274046	9859	-0.03	NEUTRAL	NA	490	Too-Many
TCGA.CM.6163	1	12911095	144549928	32374	-0.3991	NEUTRAL	NA	888	Too-Many
TCGA.AZ.4614	1	12915846	26565664	4034	-0.0979	NEUTRAL	NA	181	Too-Many
TCGA.AF.6655	1	12915846	249198691	66532	-0.0046	NEUTRAL	NA	1830	Too-Many
TCGA.AA.A00D.01A	1	12943106	15755062	47	-0.2735	NEUTRAL	NA	28	"C1orf195,EFHD2,FHAD1,HNRNPCL2,KAZN,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PDPN,PRAMEF10,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PRDM2,TMEM51"
TCGA.AG.3909.01A	1	12952762	15370434	37	0.0858	NEUTRAL	NA	23	"HNRNPCL2,KAZN,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PDPN,PRAMEF10,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PRDM2"
TCGA.AG.3906.01A	1	12954470	16073984	124	-0.4808	NEUTRAL	NA	38	"AGMAT,C1orf195,CASP9,CELA2A,CELA2B,CTRC,DDI2,DNAJC16,EFHD2,FHAD1,HNRNPCL2,KAZN,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PDPN,PLEKHM2,PRAMEF10,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PRDM2,RSC1A1,SLC25A34,TMEM51,TMEM82"
TCGA.AA.A00N.01A	1	13497547	15392119	37	-0.161	NEUTRAL	NA	17	"KAZN,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PDPN,PRAMEF10,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF20,PRAMEF7,PRAMEF8,PRDM2"
TCGA.CK.5914.01A	1	13716889	15755062	83	-0.4592	NEUTRAL	NA	10	"C1orf195,EFHD2,FHAD1,KAZN,LRRC38,PDPN,PRAMEF17,PRAMEF20,PRDM2,TMEM51"
TCGA.A6.3808.01A	1	13742860	15623130	47	-0.0846	NEUTRAL	NA	8	"C1orf195,FHAD1,KAZN,LRRC38,PDPN,PRAMEF20,PRDM2,TMEM51"
TCGA.CI.6621	1	13800134	14226607	170	0.0884	NEUTRAL	NA	3	"LRRC38,PDPN,PRDM2"
TCGA.AA.3861.01A	1	13839486	16265164	181	0.1422	NEUTRAL	NA	22	"AGMAT,C1orf195,CASP9,CELA2A,CELA2B,CTRC,DDI2,DNAJC16,EFHD2,FBLIM1,FHAD1,KAZN,LRRC38,PDPN,PLEKHM2,PRDM2,RSC1A1,SLC25A34,SPEN,TMEM51,TMEM82,UQCRHL"
TCGA.AA.3862.01A	1	13839486	16332374	198	0.053	NEUTRAL	NA	24	"AGMAT,C1orf195,C1orf64,CASP9,CELA2A,CELA2B,CTRC,DDI2,DNAJC16,EFHD2,FBLIM1,FHAD1,KAZN,LRRC38,PDPN,PLEKHM2,PRDM2,RSC1A1,SLC25A34,SPEN,TMEM51,TMEM82,UQCRHL,ZBTB17"
TCGA.AG.3611.01A	1	14042004	14075805	5	-0.4857	NEUTRAL	NA	1	PRDM2
TCGA.AG.4009.01A	1	14099561	15819406	48	0.3073	NEUTRAL	NA	10	"C1orf195,CASP9,CELA2A,CELA2B,CTRC,EFHD2,FHAD1,KAZN,PRDM2,TMEM51"
TCGA.AG.3611.01A	1	14099561	16621230	194	0.1376	NEUTRAL	NA	30	"AGMAT,ARHGEF19,C1orf195,C1orf64,CASP9,CELA2A,CELA2B,CLCNKA,CLCNKB,CTRC,DDI2,DNAJC16,EFHD2,EPHA2,FAM131C,FBLIM1,FBXO42,FHAD1,HSPB7,KAZN,PLEKHM2,PRDM2,RSC1A1,RSG1,SLC25A34,SPEN,TMEM51,TMEM82,UQCRHL,ZBTB17"
TCGA.AA.A010.01A	1	14104932	15287129	10	0	NEUTRAL	NA	2	"KAZN,PRDM2"
TCGA.CI.6621	1	14228076	114568163	30220	-0.3176	NEUTRAL	NA	812	Too-Many
TCGA.A6.2682	1	14280584	15323415	494	0.0334	NEUTRAL	NA	1	KAZN
TCGA.CA.5797	1	14346628	189431941	45622	-0.0361	NEUTRAL	NA	1408	Too-Many
TCGA.AA.3561	1	14463066	88335473	22346	0.0108	NEUTRAL	NA	640	Too-Many
TCGA.CM.5348	1	14859578	74075688	17472	-0.0352	NEUTRAL	NA	583	Too-Many
TCGA.EI.6508	1	15107522	59802889	12724	-0.0288	NEUTRAL	NA	531	Too-Many
TCGA.AG.A01W.01A	1	15313504	15351338	5	0.283	NEUTRAL	NA	1	KAZN
TCGA.A6.2682	1	15329986	29505612	3723	-0.4097	NEUTRAL	NA	213	Too-Many
TCGA.AA.A00Q.01A	1	15615843	15753599	7	0.2261	NEUTRAL	NA	2	"EFHD2,FHAD1"
TCGA.A6.3808.01A	1	15686926	16731411	236	-0.4796	NEUTRAL	NA	28	"AGMAT,ARHGEF19,C1orf64,CASP9,CELA2A,CELA2B,CLCNKA,CLCNKB,CTRC,DDI2,DNAJC16,EFHD2,EPHA2,FAM131C,FBLIM1,FBXO42,FHAD1,HSPB7,PLEKHM2,RSC1A1,RSG1,SLC25A34,SPATA21,SPEN,SZRD1,TMEM82,UQCRHL,ZBTB17"
TCGA.AA.A010.01A	1	15702072	15755062	11	-0.3751	NEUTRAL	NA	2	"EFHD2,FHAD1"
TCGA.AA.3930.01A	1	15755062	15819406	26	0.1992	NEUTRAL	NA	5	"CASP9,CELA2A,CELA2B,CTRC,EFHD2"
TCGA.CK.5914.01A	1	15764884	15813732	23	0.3481	NEUTRAL	NA	3	"CELA2A,CELA2B,CTRC"
TCGA.AG.3909.01A	1	15817700	15959907	30	-0.4337	NEUTRAL	NA	5	"AGMAT,CASP9,CELA2B,DDI2,DNAJC16"
TCGA.AA.A00D.01A	1	15817700	16583054	138	-0.2824	NEUTRAL	NA	22	"AGMAT,ARHGEF19,C1orf64,CASP9,CELA2B,CLCNKA,CLCNKB,DDI2,DNAJC16,EPHA2,FAM131C,FBLIM1,FBXO42,HSPB7,PLEKHM2,RSC1A1,RSG1,SLC25A34,SPEN,TMEM82,UQCRHL,ZBTB17"
TCGA.AA.3930.01A	1	15820357	15855553	8	-0.47	NEUTRAL	NA	2	"CASP9,DNAJC16"
TCGA.AG.4009.01A	1	15821727	16044339	35	-0.1122	NEUTRAL	NA	6	"AGMAT,CASP9,DDI2,DNAJC16,PLEKHM2,RSC1A1"
TCGA.AA.A010.01A	1	15855553	15893542	11	0.0931	NEUTRAL	NA	1	DNAJC16
TCGA.AA.A017.01A	1	15855553	28858643	1432	-0.4316	NEUTRAL	NA	195	Too-Many
TCGA.AA.3930.01A	1	15860666	16047756	34	0.0659	NEUTRAL	NA	5	"AGMAT,DDI2,DNAJC16,PLEKHM2,RSC1A1"
TCGA.AG.A01W.01A	1	15927100	15936943	11	0.0686	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	1	15964770	16046181	12	-0.0886	NEUTRAL	NA	3	"DDI2,PLEKHM2,RSC1A1"
TCGA.AG.3909.01A	1	15964770	16133817	31	0.0467	NEUTRAL	NA	7	"DDI2,FBLIM1,PLEKHM2,RSC1A1,SLC25A34,TMEM82,UQCRHL"
TCGA.AA.A00N.01A	1	15969965	16237559	46	0.0098	NEUTRAL	NA	8	"DDI2,FBLIM1,PLEKHM2,RSC1A1,SLC25A34,SPEN,TMEM82,UQCRHL"
TCGA.CM.5868	1	16012656	249198691	65614	0	NEUTRAL	NA	1793	Too-Many
TCGA.AG.A00C.01A	1	16042715	16064355	9	-0.4098	NEUTRAL	NA	2	"PLEKHM2,SLC25A34"
TCGA.AG.A01W.01A	1	16047090	16136204	15	-0.29	NEUTRAL	NA	5	"FBLIM1,PLEKHM2,SLC25A34,TMEM82,UQCRHL"
TCGA.AA.A010.01A	1	16051775	16237559	34	0.0084	NEUTRAL	NA	6	"FBLIM1,PLEKHM2,SLC25A34,SPEN,TMEM82,UQCRHL"
TCGA.AA.3930.01A	1	16051775	17314594	194	-0.2691	NEUTRAL	NA	25	"ARHGEF19,ATP13A2,C1orf64,CLCNKA,CLCNKB,CROCC,EPHA2,FAM131C,FAM231A,FBLIM1,FBXO42,HSPB7,MFAP2,MST1L,NBPF1,NECAP2,PLEKHM2,RSG1,SLC25A34,SPATA21,SPEN,SZRD1,TMEM82,UQCRHL,ZBTB17"
TCGA.AG.3891.01A	1	16054521	16069007	11	-0.2547	NEUTRAL	NA	3	"PLEKHM2,SLC25A34,TMEM82"
TCGA.AG.A00C.01A	1	16065670	17371209	171	0.1185	NEUTRAL	NA	25	"ARHGEF19,ATP13A2,C1orf64,CLCNKA,CLCNKB,CROCC,EPHA2,FAM131C,FAM231A,FBLIM1,FBXO42,HSPB7,MFAP2,MST1L,NBPF1,NECAP2,RSG1,SDHB,SLC25A34,SPATA21,SPEN,SZRD1,TMEM82,UQCRHL,ZBTB17"
TCGA.AG.3891.01A	1	16069299	18958042	310	0.1554	NEUTRAL	NA	35	"ACTL8,ARHGEF10L,ARHGEF19,ATP13A2,C1orf64,CLCNKA,CLCNKB,CROCC,EPHA2,FAM131C,FAM231A,FBLIM1,FBXO42,HSPB7,IGSF21,KLHDC7A,MFAP2,MST1L,NBPF1,NECAP2,PADI1,PADI2,PADI3,PADI4,PADI6,PAX7,RCC2,RSG1,SDHB,SPATA21,SPEN,SZRD1,TMEM82,UQCRHL,ZBTB17"
TCGA.AG.4009.01A	1	16073340	16274779	35	-0.2018	NEUTRAL	NA	5	"FBLIM1,SPEN,TMEM82,UQCRHL,ZBTB17"
TCGA.AG.3906.01A	1	16091458	16101085	5	0.2999	NEUTRAL	NA	1	FBLIM1
TCGA.CK.5914.01A	1	16091458	16174503	9	0.2249	NEUTRAL	NA	3	"FBLIM1,SPEN,UQCRHL"
TCGA.AG.A01W.01A	1	16147326	20908679	603	-0.4833	NEUTRAL	NA	60	"ACTL8,AKR7A2,AKR7A3,ALDH4A1,ARHGEF10L,ARHGEF19,ATP13A2,C1orf64,CAMK2N1,CAPZB,CLCNKA,CLCNKB,CROCC,EMC1,EPHA2,FAM131C,FAM231A,FAM43B,FBXO42,HSPB7,HTR6,IFFO2,IGSF21,KLHDC7A,MFAP2,MINOS1,MINOS1-NBL1,MRTO4,MST1L,MUL1,NBL1,NBPF1,NECAP2,OTUD3,PADI1,PADI2,PADI3,PADI4,PADI6,PAX7,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,PQLC2,RCC2,RNF186,RSG1,SDHB,SPATA21,SPEN,SZRD1,TAS1R2,TMCO4,UBR4,UBXN10,VWA5B1,ZBTB17"
TCGA.CK.5914.01A	1	16199332	16248732	10	-0.4176	NEUTRAL	NA	1	SPEN
TCGA.AA.A00N.01A	1	16242572	16389964	64	-0.4187	NEUTRAL	NA	7	"C1orf64,CLCNKA,CLCNKB,FAM131C,HSPB7,SPEN,ZBTB17"
TCGA.AA.A010.01A	1	16259096	16372005	38	0.0185	NEUTRAL	NA	6	"C1orf64,CLCNKA,CLCNKB,HSPB7,SPEN,ZBTB17"
TCGA.AA.3980.01A	1	16269509	16356422	24	-0.4229	NEUTRAL	NA	4	"C1orf64,CLCNKA,HSPB7,ZBTB17"
TCGA.A6.3810.01A	1	16272159	16273393	3	0.3608	NEUTRAL	NA	1	ZBTB17
TCGA.A6.3810.01A	1	16274779	45190769	3559	-0.2383	NEUTRAL	NA	387	Too-Many
TCGA.AG.4009.01A	1	16332374	16464316	47	0.3732	NEUTRAL	NA	6	"C1orf64,CLCNKA,CLCNKB,EPHA2,FAM131C,HSPB7"
TCGA.AA.3980.01A	1	16359622	45251222	3501	-0.0978	NEUTRAL	NA	387	Too-Many
TCGA.AA.3862.01A	1	16378642	16785310	76	-0.0418	NEUTRAL	NA	9	"ARHGEF19,CLCNKB,EPHA2,FAM131C,FBXO42,NECAP2,RSG1,SPATA21,SZRD1"
TCGA.AA.3861.01A	1	16380096	16785310	75	0.1081	NEUTRAL	NA	9	"ARHGEF19,CLCNKB,EPHA2,FAM131C,FBXO42,NECAP2,RSG1,SPATA21,SZRD1"
TCGA.AG.3909.01A	1	16385938	16464316	14	0.0568	NEUTRAL	NA	2	"EPHA2,FAM131C"
TCGA.AA.A00N.01A	1	16451662	16464316	11	0.2324	NEUTRAL	NA	1	EPHA2
TCGA.AA.A010.01A	1	16451662	16641626	43	0.2715	NEUTRAL	NA	4	"ARHGEF19,EPHA2,FBXO42,RSG1"
TCGA.AG.4009.01A	1	16474852	16535131	12	-0.287	NEUTRAL	NA	2	"ARHGEF19,EPHA2"
TCGA.AA.A00N.01A	1	16474852	16717793	34	-0.4802	NEUTRAL	NA	5	"ARHGEF19,EPHA2,FBXO42,RSG1,SZRD1"
TCGA.AG.4009.01A	1	16558565	16725200	16	0.1939	NEUTRAL	NA	4	"FBXO42,RSG1,SPATA21,SZRD1"
TCGA.CK.5914.01A	1	16563084	16583054	7	0.3225	NEUTRAL	NA	2	"FBXO42,RSG1"
TCGA.AG.3909.01A	1	16577128	17271910	46	-0.0823	NEUTRAL	NA	8	"CROCC,FAM231A,FBXO42,MST1L,NBPF1,NECAP2,SPATA21,SZRD1"
TCGA.AA.A01Q.01A	1	16577128	17281770	50	0.0323	NEUTRAL	NA	8	"CROCC,FAM231A,FBXO42,MST1L,NBPF1,NECAP2,SPATA21,SZRD1"
TCGA.CK.5914.01A	1	16621230	16785310	26	-0.4143	NEUTRAL	NA	4	"FBXO42,NECAP2,SPATA21,SZRD1"
TCGA.AG.3611.01A	1	16747932	29652046	1417	0.0885	NEUTRAL	NA	185	Too-Many
TCGA.AA.A00D.01A	1	16770088	17380392	52	-0.1484	NEUTRAL	NA	8	"ATP13A2,CROCC,FAM231A,MFAP2,MST1L,NBPF1,NECAP2,SDHB"
TCGA.AA.A00N.01A	1	16774317	16895584	8	-0.4379	NEUTRAL	NA	2	"NBPF1,NECAP2"
TCGA.AG.4009.01A	1	16774317	16909015	10	0.0912	NEUTRAL	NA	2	"NBPF1,NECAP2"
TCGA.AA.3972	1	16785563	30737372	3849	-0.1731	NEUTRAL	NA	184	Too-Many
TCGA.CK.4948.01B	1	16890448	16915320	8	0.3596	NEUTRAL	NA	1	NBPF1
TCGA.AA.A010.01A	1	16890448	17328472	58	-0.4955	NEUTRAL	NA	6	"ATP13A2,CROCC,FAM231A,MFAP2,MST1L,NBPF1"
TCGA.AA.A00Q.01A	1	16895584	17297083	18	0.1499	NEUTRAL	NA	4	"CROCC,FAM231A,MST1L,NBPF1"
TCGA.AA.A00N.01A	1	16907267	17256334	10	0.3339	NEUTRAL	NA	4	"CROCC,FAM231A,MST1L,NBPF1"
TCGA.CK.4948.01B	1	16918425	60300993	4640	-0.0836	NEUTRAL	NA	500	Too-Many
TCGA.AG.3906.01A	1	17249110	17355066	39	-0.0913	NEUTRAL	NA	4	"ATP13A2,CROCC,MFAP2,SDHB"
TCGA.AA.A00N.01A	1	17256614	17371209	57	-0.3496	NEUTRAL	NA	4	"ATP13A2,CROCC,MFAP2,SDHB"
TCGA.AA.A00L.01A	1	17264845	17297083	14	0.1232	NEUTRAL	NA	1	CROCC
TCGA.AG.3909.01A	1	17272703	17355066	33	-0.5115	NEUTRAL	NA	4	"ATP13A2,CROCC,MFAP2,SDHB"
TCGA.AA.A01Q.01A	1	17282461	17345318	31	-0.3732	NEUTRAL	NA	4	"ATP13A2,CROCC,MFAP2,SDHB"
TCGA.AA.A00L.01A	1	17298798	19472245	224	-0.2913	NEUTRAL	NA	19	"ACTL8,ALDH4A1,ARHGEF10L,ATP13A2,CROCC,IFFO2,IGSF21,KLHDC7A,MFAP2,PADI1,PADI2,PADI3,PADI4,PADI6,PAX7,RCC2,SDHB,TAS1R2,UBR4"
TCGA.AA.A01I.01A	1	17318538	18958042	132	-0.2693	NEUTRAL	NA	13	"ACTL8,ARHGEF10L,ATP13A2,IGSF21,KLHDC7A,PADI1,PADI2,PADI3,PADI4,PADI6,PAX7,RCC2,SDHB"
TCGA.AA.3861.01A	1	17322444	21924457	567	0.057	NEUTRAL	NA	52	"ACTL8,AKR7A2,AKR7A3,ALDH4A1,ALPL,ARHGEF10L,ATP13A2,CAMK2N1,CAPZB,CDA,DDOST,ECE1,EIF4G3,EMC1,FAM43B,HP1BP3,HTR6,IFFO2,IGSF21,KIF17,KLHDC7A,MINOS1,MINOS1-NBL1,MRTO4,MUL1,NBL1,NBPF3,OTUD3,PADI1,PADI2,PADI3,PADI4,PADI6,PAX7,PINK1,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,PQLC2,RAP1GAP,RCC2,RNF186,SDHB,SH2D5,TAS1R2,TMCO4,UBR4,UBXN10,VWA5B1"
TCGA.AA.3862.01A	1	17322444	24973116	987	-0.0443	NEUTRAL	NA	95	"ACTL8,AKR7A2,AKR7A3,ALDH4A1,ALPL,ARHGEF10L,ASAP3,ATP13A2,C1QA,C1QB,C1QC,C1orf234,CAMK2N1,CAPZB,CDA,CDC42,CELA3A,CELA3B,CNR2,DDOST,E2F2,ECE1,EIF4G3,EMC1,EPHA8,EPHB2,FAM43B,FUCA1,GALE,GRHL3,HMGCL,HNRNPR,HP1BP3,HSPG2,HTR1D,HTR6,ID3,IFFO2,IFNLR1,IGSF21,IL22RA1,KDM1A,KIF17,KLHDC7A,LACTBL1,LDLRAD2,LUZP1,LYPLA2,MINOS1,MINOS1-NBL1,MRTO4,MUL1,MYOM3,NBL1,NBPF3,NCMAP,NIPAL3,OTUD3,PADI1,PADI2,PADI3,PADI4,PADI6,PAX7,PINK1,PITHD1,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,PNRC2,PQLC2,RAP1GAP,RCAN3,RCC2,RNF186,RPL11,SDHB,SH2D5,SRRM1,SRSF10,STPG1,TAS1R2,TCEA3,TCEB3,TMCO4,UBR4,UBXN10,USP48,VWA5B1,WNT4,ZBTB40,ZNF436"
TCGA.AA.3930.01A	1	17322444	35835611	2183	-0.2011	NEUTRAL	NA	243	Too-Many
TCGA.A6.3808.01A	1	17345318	33502284	2025	-0.2219	NEUTRAL	NA	222	Too-Many
TCGA.CK.5914.01A	1	17349066	17371209	6	-0.2587	NEUTRAL	NA	1	SDHB
TCGA.AA.A01Q.01A	1	17349066	17405704	13	0.2822	NEUTRAL	NA	2	"PADI2,SDHB"
TCGA.AG.4009.01A	1	17354195	17395497	6	-0.0558	NEUTRAL	NA	2	"PADI2,SDHB"
TCGA.AG.3906.01A	1	17359499	17742929	83	-0.5049	NEUTRAL	NA	7	"PADI1,PADI2,PADI3,PADI4,PADI6,RCC2,SDHB"
TCGA.CK.5914.01A	1	17380392	17689977	62	0.3754	NEUTRAL	NA	5	"PADI1,PADI2,PADI3,PADI4,SDHB"
TCGA.AG.A00C.01A	1	17380392	17720768	70	-0.2718	NEUTRAL	NA	6	"PADI1,PADI2,PADI3,PADI4,PADI6,SDHB"
TCGA.AG.4009.01A	1	17396535	17913913	85	0.2799	NEUTRAL	NA	7	"ARHGEF10L,PADI1,PADI2,PADI3,PADI4,PADI6,RCC2"
TCGA.AA.A01Q.01A	1	17409012	17606828	36	-0.3758	NEUTRAL	NA	3	"PADI1,PADI2,PADI3"
TCGA.D5.6926	1	17534309	17829955	115	-0.4636	NEUTRAL	NA	5	"PADI1,PADI3,PADI4,PADI6,RCC2"
TCGA.AA.A01Q.01A	1	17607116	17721430	22	0.1407	NEUTRAL	NA	3	"PADI3,PADI4,PADI6"
TCGA.AG.A01J.01A	1	17689977	168274226	9975	-0.0916	NEUTRAL	NA	1250	Too-Many
TCGA.AA.A00N.01A	1	17706351	17738568	16	0.3463	NEUTRAL	NA	2	"PADI6,RCC2"
TCGA.AA.A010.01A	1	17706351	17738568	16	0.1835	NEUTRAL	NA	2	"PADI6,RCC2"
TCGA.AG.A01L.01A	1	17720432	17747160	14	0.0097	NEUTRAL	NA	2	"PADI6,RCC2"
TCGA.AG.A00C.01A	1	17721430	17907010	17	0.2593	NEUTRAL	NA	3	"ARHGEF10L,PADI6,RCC2"
TCGA.AG.3909.01A	1	17723516	17960954	28	-0.2171	NEUTRAL	NA	3	"ARHGEF10L,PADI6,RCC2"
TCGA.AG.3906.01A	1	17747160	17755548	5	0.1683	NEUTRAL	NA	1	RCC2
TCGA.AG.A01L.01A	1	17748663	18811237	43	-0.2959	NEUTRAL	NA	5	"ACTL8,ARHGEF10L,IGSF21,KLHDC7A,RCC2"
TCGA.D5.6926	1	17833144	249198691	65195	-0.049	NEUTRAL	NA	1761	Too-Many
TCGA.AG.A00C.01A	1	17913913	18703255	32	-0.3149	NEUTRAL	NA	3	"ACTL8,ARHGEF10L,IGSF21"
TCGA.AA.A01Q.01A	1	18014020	18809906	18	0.124	NEUTRAL	NA	4	"ACTL8,ARHGEF10L,IGSF21,KLHDC7A"
TCGA.AG.4009.01A	1	18021603	19611472	176	0.1837	NEUTRAL	NA	12	"ACTL8,AKR7A3,ALDH4A1,ARHGEF10L,EMC1,IFFO2,IGSF21,KLHDC7A,MRTO4,PAX7,TAS1R2,UBR4"
TCGA.AA.3522	1	18202180	18689606	295	-0.0265	NEUTRAL	NA	1	IGSF21
TCGA.AA.3522	1	18697022	20255991	613	-0.0236	NEUTRAL	NA	21	"AKR7A2,AKR7A3,ALDH4A1,CAPZB,EMC1,HTR6,IFFO2,IGSF21,KLHDC7A,MINOS1,MINOS1-NBL1,MRTO4,NBL1,OTUD3,PAX7,PLA2G2E,PQLC2,RNF186,TAS1R2,TMCO4,UBR4"
TCGA.AG.A00C.01A	1	18703809	18962684	10	0.2418	NEUTRAL	NA	3	"IGSF21,KLHDC7A,PAX7"
TCGA.AG.3909.01A	1	18807458	19236789	33	-0.4341	NEUTRAL	NA	5	"ALDH4A1,IFFO2,KLHDC7A,PAX7,TAS1R2"
TCGA.AA.A00N.01A	1	18807458	19410981	48	-0.0561	NEUTRAL	NA	6	"ALDH4A1,IFFO2,KLHDC7A,PAX7,TAS1R2,UBR4"
TCGA.AA.A010.01A	1	18809906	19430531	60	-0.0857	NEUTRAL	NA	6	"ALDH4A1,IFFO2,KLHDC7A,PAX7,TAS1R2,UBR4"
TCGA.AG.3906.01A	1	18811237	19029546	7	-0.1292	NEUTRAL	NA	2	"KLHDC7A,PAX7"
TCGA.AA.A01Q.01A	1	18811237	19404415	34	-0.4075	NEUTRAL	NA	6	"ALDH4A1,IFFO2,KLHDC7A,PAX7,TAS1R2,UBR4"
TCGA.AA.A01I.01A	1	18962684	89835056	5185	-0.1466	NEUTRAL	NA	602	Too-Many
TCGA.AG.A00C.01A	1	19018197	19519910	112	-0.1702	NEUTRAL	NA	5	"ALDH4A1,IFFO2,PAX7,TAS1R2,UBR4"
TCGA.AG.3891.01A	1	19027135	20517608	238	0.0907	NEUTRAL	NA	25	"AKR7A2,AKR7A3,ALDH4A1,CAPZB,EMC1,HTR6,IFFO2,MINOS1,MINOS1-NBL1,MRTO4,NBL1,OTUD3,PAX7,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,PQLC2,RNF186,TAS1R2,TMCO4,UBR4,UBXN10"
TCGA.AG.A01L.01A	1	19029546	24398384	649	-0.1051	NEUTRAL	NA	75	"AKR7A2,AKR7A3,ALDH4A1,ALPL,ASAP3,C1QA,C1QB,C1QC,C1orf234,CAMK2N1,CAPZB,CDA,CDC42,CELA3A,CELA3B,CNR2,DDOST,E2F2,ECE1,EIF4G3,EMC1,EPHA8,EPHB2,FAM43B,FUCA1,GALE,HMGCL,HNRNPR,HP1BP3,HSPG2,HTR1D,HTR6,ID3,IFFO2,KDM1A,KIF17,LACTBL1,LDLRAD2,LUZP1,LYPLA2,MINOS1,MINOS1-NBL1,MRTO4,MUL1,MYOM3,NBL1,NBPF3,OTUD3,PAX7,PINK1,PITHD1,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,PNRC2,PQLC2,RAP1GAP,RNF186,RPL11,SH2D5,SRSF10,TAS1R2,TCEA3,TCEB3,TMCO4,UBR4,UBXN10,USP48,VWA5B1,WNT4,ZBTB40,ZNF436"
TCGA.CM.6677	1	19120896	33335038	3624	-0.0162	NEUTRAL	NA	206	Too-Many
TCGA.AG.3909.01A	1	19401262	19511554	84	0.367	NEUTRAL	NA	1	UBR4
TCGA.CK.5914.01A	1	19407805	19519910	87	0.3575	NEUTRAL	NA	1	UBR4
TCGA.AA.A01Q.01A	1	19407805	19557311	98	0.2263	NEUTRAL	NA	2	"EMC1,UBR4"
TCGA.AH.6549.01A	1	19419276	19746103	153	-0.2544	NEUTRAL	NA	7	"AKR7A2,AKR7A3,CAPZB,EMC1,MRTO4,PQLC2,UBR4"
TCGA.AA.A00L.01A	1	19480235	21091818	192	-0.3494	NEUTRAL	NA	31	"AKR7A2,AKR7A3,CAMK2N1,CAPZB,CDA,DDOST,EMC1,FAM43B,HP1BP3,HTR6,KIF17,MINOS1,MINOS1-NBL1,MRTO4,MUL1,NBL1,OTUD3,PINK1,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,PQLC2,RNF186,SH2D5,TMCO4,UBR4,UBXN10,VWA5B1"
TCGA.AG.A01N.01A	1	19493474	43850684	2536	-0.2584	NEUTRAL	NA	335	Too-Many
TCGA.AG.3909.01A	1	19512985	19577898	32	-0.4259	NEUTRAL	NA	2	"EMC1,UBR4"
TCGA.AG.A00C.01A	1	19523587	20009491	78	0.2412	NEUTRAL	NA	12	"AKR7A2,AKR7A3,CAPZB,EMC1,HTR6,MINOS1,MINOS1-NBL1,MRTO4,NBL1,PQLC2,TMCO4,UBR4"
TCGA.AA.A01Q.01A	1	19557707	20097749	73	-0.1037	NEUTRAL	NA	11	"AKR7A2,AKR7A3,CAPZB,EMC1,HTR6,MINOS1,MINOS1-NBL1,MRTO4,NBL1,PQLC2,TMCO4"
TCGA.AA.A00D.01A	1	19563588	19633785	33	-0.0657	NEUTRAL	NA	4	"AKR7A2,AKR7A3,EMC1,MRTO4"
TCGA.AA.A010.01A	1	19611142	19923475	31	-0.2739	NEUTRAL	NA	6	"AKR7A2,AKR7A3,CAPZB,MINOS1,MINOS1-NBL1,PQLC2"
TCGA.AG.3906.01A	1	19630682	19651086	8	-0.0838	NEUTRAL	NA	2	"AKR7A2,PQLC2"
TCGA.AA.A00D.01A	1	19634625	22140879	229	-0.4395	NEUTRAL	NA	34	"AKR7A2,ALPL,CAMK2N1,CAPZB,CDA,DDOST,ECE1,EIF4G3,FAM43B,HP1BP3,HTR6,KIF17,LDLRAD2,MINOS1,MINOS1-NBL1,MUL1,NBL1,NBPF3,OTUD3,PINK1,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,PQLC2,RAP1GAP,RNF186,SH2D5,TMCO4,UBXN10,USP48,VWA5B1"
TCGA.AG.4009.01A	1	19665978	19949938	14	0.2398	NEUTRAL	NA	3	"CAPZB,MINOS1,MINOS1-NBL1"
TCGA.DM.A28H	1	19667551	23115748	1130	0.0177	NEUTRAL	NA	43	"ALPL,C1QA,C1QB,C1QC,CAMK2N1,CAPZB,CDA,CDC42,CELA3A,CELA3B,DDOST,ECE1,EIF4G3,EPHA8,EPHB2,FAM43B,HP1BP3,HSPG2,HTR6,KIF17,LDLRAD2,MINOS1,MINOS1-NBL1,MUL1,NBL1,NBPF3,OTUD3,PINK1,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,RAP1GAP,RNF186,SH2D5,TMCO4,UBXN10,USP48,VWA5B1,WNT4,ZBTB40"
TCGA.AG.3909.01A	1	19704985	22222621	302	-0.1535	NEUTRAL	NA	33	"ALPL,CAMK2N1,CAPZB,CDA,DDOST,ECE1,EIF4G3,FAM43B,HP1BP3,HSPG2,HTR6,KIF17,LDLRAD2,MINOS1,MINOS1-NBL1,MUL1,NBL1,NBPF3,OTUD3,PINK1,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,RAP1GAP,RNF186,SH2D5,TMCO4,UBXN10,USP48,VWA5B1"
TCGA.A6.5661	1	19723847	55338678	9052	-0.3533	NEUTRAL	NA	457	Too-Many
TCGA.AH.6549.01A	1	19775267	97563998	6061	0.1119	NEUTRAL	NA	633	Too-Many
TCGA.AG.3906.01A	1	19949938	20005382	6	0.0878	NEUTRAL	NA	4	"HTR6,MINOS1,MINOS1-NBL1,NBL1"
TCGA.AG.4009.01A	1	20005011	20517608	47	0.2043	NEUTRAL	NA	11	"HTR6,OTUD3,PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,RNF186,TMCO4,UBXN10"
TCGA.AA.A010.01A	1	20005382	20027214	5	-0.3469	NEUTRAL	NA	2	"HTR6,TMCO4"
TCGA.AG.3906.01A	1	20009491	20220814	16	-0.4891	NEUTRAL	NA	3	"OTUD3,RNF186,TMCO4"
TCGA.AA.A00F.01A	1	20009491	20249936	18	-0.4949	NEUTRAL	NA	4	"OTUD3,PLA2G2E,RNF186,TMCO4"
TCGA.AG.A00C.01A	1	20020885	20097749	11	-0.4435	NEUTRAL	NA	1	TMCO4
TCGA.AA.A010.01A	1	20096952	20234065	11	-0.0244	NEUTRAL	NA	3	"OTUD3,RNF186,TMCO4"
TCGA.AG.A00C.01A	1	20107021	20411242	18	0.1052	NEUTRAL	NA	6	"OTUD3,PLA2G2A,PLA2G2E,PLA2G5,RNF186,TMCO4"
TCGA.AA.A01Q.01A	1	20107021	20445920	19	0.2852	NEUTRAL	NA	7	"OTUD3,PLA2G2A,PLA2G2D,PLA2G2E,PLA2G5,RNF186,TMCO4"
TCGA.AA.A00N.01A	1	20234065	20305165	9	0.357	NEUTRAL	NA	3	"OTUD3,PLA2G2A,PLA2G2E"
TCGA.AA.3522	1	20257350	119680966	29788	-0.3631	NEUTRAL	NA	778	Too-Many
TCGA.AA.A00F.01A	1	20302146	20305165	4	0.03	NEUTRAL	NA	1	PLA2G2A
TCGA.AG.3906.01A	1	20411242	21106266	67	-0.3666	NEUTRAL	NA	15	"CAMK2N1,CDA,DDOST,FAM43B,HP1BP3,KIF17,MUL1,PINK1,PLA2G2C,PLA2G2D,PLA2G2F,PLA2G5,SH2D5,UBXN10,VWA5B1"
TCGA.AG.A00C.01A	1	20412529	20471022	10	-0.4254	NEUTRAL	NA	3	"PLA2G2D,PLA2G2F,PLA2G5"
TCGA.AA.A01Q.01A	1	20466609	21151543	78	-0.1308	NEUTRAL	NA	14	"CAMK2N1,CDA,DDOST,EIF4G3,FAM43B,HP1BP3,KIF17,MUL1,PINK1,PLA2G2C,PLA2G2F,SH2D5,UBXN10,VWA5B1"
TCGA.AG.A00C.01A	1	20474636	21050585	45	0.1264	NEUTRAL	NA	12	"CAMK2N1,CDA,DDOST,FAM43B,KIF17,MUL1,PINK1,PLA2G2C,PLA2G2F,SH2D5,UBXN10,VWA5B1"
TCGA.AA.A00N.01A	1	20490432	21054423	77	0.0685	NEUTRAL	NA	11	"CAMK2N1,CDA,DDOST,FAM43B,KIF17,MUL1,PINK1,PLA2G2C,SH2D5,UBXN10,VWA5B1"
TCGA.AA.A00F.01A	1	20517068	20829679	8	0.0219	NEUTRAL	NA	4	"CAMK2N1,MUL1,UBXN10,VWA5B1"
TCGA.AA.3982	1	20572453	20577029	9	-0.4734	NEUTRAL	NA	0	None
TCGA.AA.3982	1	20582417	24237630	1027	0.3283	NEUTRAL	NA	47	"ALPL,ASAP3,C1QA,C1QB,C1QC,C1orf234,CAMK2N1,CDA,CDC42,CELA3A,CELA3B,CNR2,DDOST,E2F2,ECE1,EIF4G3,EPHA8,EPHB2,FAM43B,FUCA1,GALE,HMGCL,HNRNPR,HP1BP3,HSPG2,HTR1D,ID3,KDM1A,KIF17,LACTBL1,LDLRAD2,LUZP1,LYPLA2,MUL1,NBPF3,PINK1,PITHD1,RAP1GAP,RPL11,SH2D5,TCEA3,TCEB3,USP48,VWA5B1,WNT4,ZBTB40,ZNF436"
TCGA.AG.4009.01A	1	20664089	20976880	17	-0.2926	NEUTRAL	NA	6	"CAMK2N1,CDA,FAM43B,MUL1,PINK1,VWA5B1"
TCGA.AA.A010.01A	1	20671902	20680243	6	-0.0773	NEUTRAL	NA	1	VWA5B1
TCGA.AG.3891.01A	1	20810081	21091818	48	0.2733	NEUTRAL	NA	9	"CAMK2N1,CDA,DDOST,FAM43B,HP1BP3,KIF17,MUL1,PINK1,SH2D5"
TCGA.AA.A010.01A	1	20834360	21030942	33	0.1732	NEUTRAL	NA	6	"CDA,DDOST,FAM43B,KIF17,MUL1,PINK1"
TCGA.AA.A00F.01A	1	20834360	21094026	43	-0.2028	NEUTRAL	NA	8	"CDA,DDOST,FAM43B,HP1BP3,KIF17,MUL1,PINK1,SH2D5"
TCGA.AG.A01W.01A	1	20912486	20926544	9	0.2159	NEUTRAL	NA	1	CDA
TCGA.AG.A01W.01A	1	20943861	22029026	143	-0.4254	NEUTRAL	NA	12	"ALPL,CDA,DDOST,ECE1,EIF4G3,HP1BP3,KIF17,NBPF3,PINK1,RAP1GAP,SH2D5,USP48"
TCGA.AG.3901	1	20955182	34546013	3376	-0.3552	NEUTRAL	NA	189	Too-Many
TCGA.AG.4009.01A	1	20978825	21030942	15	0.3213	NEUTRAL	NA	2	"DDOST,KIF17"
TCGA.AA.A00F.01A	1	21097385	21155593	12	0.1569	NEUTRAL	NA	2	"EIF4G3,HP1BP3"
TCGA.AG.3906.01A	1	21151543	27661826	788	-0.5009	NEUTRAL	NA	96	"AIM1L,ALPL,ARID1A,ASAP3,AUNIP,C1QA,C1QB,C1QC,C1orf234,CATSPER4,CD52,CDC42,CELA3A,CELA3B,CEP85,CLIC4,CNKSR1,CNR2,DHDDS,E2F2,ECE1,EIF4G3,EPHA8,EPHB2,EXTL1,FAM110D,FAM46B,FUCA1,GALE,GPATCH3,GPN2,GRHL3,HMGCL,HMGN2,HNRNPR,HSPG2,HTR1D,ID3,IFNLR1,IL22RA1,KDF1,KDM1A,LACTBL1,LDLRAD2,LDLRAP1,LIN28A,LUZP1,LYPLA2,MAN1C1,MTFR1L,MYOM3,NBPF3,NCMAP,NIPAL3,NR0B2,NUDC,PAFAH2,PAQR7,PDIK1L,PIGV,PITHD1,PNRC2,RAP1GAP,RCAN3,RHCE,RHD,RPL11,RPS6KA1,RSRP1,RUNX3,SEPN1,SFN,SH3BGRL3,SLC30A2,SLC9A1,SRRM1,SRSF10,STMN1,STPG1,SYF2,TCEA3,TCEB3,TMEM222,TMEM50A,TMEM57,TRIM63,TRNP1,UBXN11,USP48,WDTC1,WNT4,ZBTB40,ZDHHC18,ZNF436,ZNF593,ZNF683"
TCGA.AG.3891.01A	1	21155593	22456058	194	0.2197	NEUTRAL	NA	12	"ALPL,CDC42,CELA3A,CELA3B,ECE1,EIF4G3,HSPG2,LDLRAD2,NBPF3,RAP1GAP,USP48,WNT4"
TCGA.AG.4009.01A	1	21167307	21329153	24	-0.1223	NEUTRAL	NA	1	EIF4G3
TCGA.AG.A00C.01A	1	21167307	21599154	39	-0.1656	NEUTRAL	NA	2	"ECE1,EIF4G3"
TCGA.AA.A010.01A	1	21167307	21616534	50	0.2062	NEUTRAL	NA	2	"ECE1,EIF4G3"
TCGA.AA.A00F.01A	1	21167307	26887956	636	-0.1739	NEUTRAL	NA	82	"AIM1L,ALPL,ASAP3,AUNIP,C1QA,C1QB,C1QC,C1orf234,CATSPER4,CD52,CDC42,CELA3A,CELA3B,CEP85,CLIC4,CNKSR1,CNR2,DHDDS,E2F2,ECE1,EIF4G3,EPHA8,EPHB2,EXTL1,FAM110D,FUCA1,GALE,GRHL3,HMGCL,HMGN2,HNRNPR,HSPG2,HTR1D,ID3,IFNLR1,IL22RA1,KDM1A,LACTBL1,LDLRAD2,LDLRAP1,LIN28A,LUZP1,LYPLA2,MAN1C1,MTFR1L,MYOM3,NBPF3,NCMAP,NIPAL3,PAFAH2,PAQR7,PDIK1L,PITHD1,PNRC2,RAP1GAP,RCAN3,RHCE,RHD,RPL11,RPS6KA1,RSRP1,RUNX3,SEPN1,SH3BGRL3,SLC30A2,SRRM1,SRSF10,STMN1,STPG1,SYF2,TCEA3,TCEB3,TMEM50A,TMEM57,TRIM63,UBXN11,USP48,WNT4,ZBTB40,ZNF436,ZNF593,ZNF683"
TCGA.CK.5914.01A	1	21175886	21771530	49	-0.2872	NEUTRAL	NA	3	"ECE1,EIF4G3,NBPF3"
TCGA.AA.A00L.01A	1	21226183	27684620	744	-0.3259	NEUTRAL	NA	98	"AIM1L,ALPL,ARID1A,ASAP3,AUNIP,C1QA,C1QB,C1QC,C1orf234,CATSPER4,CD52,CDC42,CELA3A,CELA3B,CEP85,CLIC4,CNKSR1,CNR2,DHDDS,E2F2,ECE1,EIF4G3,EPHA8,EPHB2,EXTL1,FAM110D,FAM46B,FUCA1,GALE,GPATCH3,GPN2,GRHL3,HMGCL,HMGN2,HNRNPR,HSPG2,HTR1D,ID3,IFNLR1,IL22RA1,KDF1,KDM1A,LACTBL1,LDLRAD2,LDLRAP1,LIN28A,LUZP1,LYPLA2,MAN1C1,MAP3K6,MTFR1L,MYOM3,NBPF3,NCMAP,NIPAL3,NR0B2,NUDC,PAFAH2,PAQR7,PDIK1L,PIGV,PITHD1,PNRC2,RAP1GAP,RCAN3,RHCE,RHD,RPL11,RPS6KA1,RSRP1,RUNX3,SEPN1,SFN,SH3BGRL3,SLC30A2,SLC9A1,SRRM1,SRSF10,STMN1,STPG1,SYF2,SYTL1,TCEA3,TCEB3,TMEM222,TMEM50A,TMEM57,TRIM63,TRNP1,UBXN11,USP48,WDTC1,WNT4,ZBTB40,ZDHHC18,ZNF436,ZNF593,ZNF683"
TCGA.AY.6196	1	21271871	145543916	29502	-0.0575	NEUTRAL	NA	794	Too-Many
TCGA.DC.5337	1	21355219	249198691	63710	0.0012	NEUTRAL	NA	1722	Too-Many
TCGA.AG.4009.01A	1	21546397	21585149	13	0.3167	NEUTRAL	NA	1	ECE1
TCGA.AA.A01Q.01A	1	21548191	21616534	17	-0.3482	NEUTRAL	NA	1	ECE1
TCGA.AG.4009.01A	1	21586723	21795132	5	-0.3283	NEUTRAL	NA	2	"ECE1,NBPF3"
TCGA.AG.A00C.01A	1	21605682	22222341	123	0.169	NEUTRAL	NA	7	"ALPL,ECE1,HSPG2,LDLRAD2,NBPF3,RAP1GAP,USP48"
TCGA.A6.6653	1	21742736	40104460	4633	-0.0305	NEUTRAL	NA	246	Too-Many
TCGA.AA.A01Q.01A	1	21771530	21806582	10	0.141	NEUTRAL	NA	1	NBPF3
TCGA.AG.4009.01A	1	21797081	21880508	12	0.033	NEUTRAL	NA	2	"ALPL,NBPF3"
TCGA.AA.A00N.01A	1	21799306	21804550	4	-0.3997	NEUTRAL	NA	1	NBPF3
TCGA.AA.A01Q.01A	1	21807441	21924126	15	-0.3744	NEUTRAL	NA	3	"ALPL,NBPF3,RAP1GAP"
TCGA.AA.A010.01A	1	21880508	21903829	11	0.348	NEUTRAL	NA	1	ALPL
TCGA.AA.A00N.01A	1	21880508	21934664	20	-0.0342	NEUTRAL	NA	2	"ALPL,RAP1GAP"
TCGA.AG.4009.01A	1	21928136	23850838	242	0.1441	NEUTRAL	NA	24	"ASAP3,C1QA,C1QB,C1QC,C1orf234,CDC42,CELA3A,CELA3B,E2F2,EPHA8,EPHB2,HNRNPR,HSPG2,HTR1D,KDM1A,LACTBL1,LDLRAD2,LUZP1,RAP1GAP,TCEA3,USP48,WNT4,ZBTB40,ZNF436"
TCGA.AA.3861.01A	1	21935285	24975300	413	0.0331	NEUTRAL	NA	44	"ASAP3,C1QA,C1QB,C1QC,C1orf234,CDC42,CELA3A,CELA3B,CNR2,E2F2,EPHA8,EPHB2,FUCA1,GALE,GRHL3,HMGCL,HNRNPR,HSPG2,HTR1D,ID3,IFNLR1,IL22RA1,KDM1A,LACTBL1,LDLRAD2,LUZP1,LYPLA2,MYOM3,NCMAP,NIPAL3,PITHD1,PNRC2,RAP1GAP,RCAN3,RPL11,SRRM1,SRSF10,STPG1,TCEA3,TCEB3,USP48,WNT4,ZBTB40,ZNF436"
TCGA.AA.A01Q.01A	1	21976205	22150090	35	0.162	NEUTRAL	NA	4	"HSPG2,LDLRAD2,RAP1GAP,USP48"
TCGA.AA.A010.01A	1	22021507	22084119	21	-0.0094	NEUTRAL	NA	1	USP48
TCGA.AA.A00N.01A	1	22027944	22032951	6	-0.1192	NEUTRAL	NA	1	USP48
TCGA.CK.5914.01A	1	22030707	22149758	25	-0.2073	NEUTRAL	NA	3	"HSPG2,LDLRAD2,USP48"
TCGA.AG.A01W.01A	1	22037866	22058611	24	-0.4549	NEUTRAL	NA	1	USP48
TCGA.AG.A036.01A	1	22047677	120737337	7211	-0.1645	NEUTRAL	NA	767	Too-Many
TCGA.AA.A00N.01A	1	22138890	22222621	69	-0.1971	NEUTRAL	NA	2	"HSPG2,LDLRAD2"
TCGA.AA.A00D.01A	1	22142388	22222621	60	-0.1316	NEUTRAL	NA	2	"HSPG2,LDLRAD2"
TCGA.AG.A00C.01A	1	22222621	23417631	95	-0.2116	NEUTRAL	NA	15	"C1QA,C1QB,C1QC,C1orf234,CDC42,CELA3A,CELA3B,EPHA8,EPHB2,HSPG2,KDM1A,LACTBL1,LUZP1,WNT4,ZBTB40"
TCGA.AA.A01Q.01A	1	22303458	22852648	37	0.2079	NEUTRAL	NA	5	"CDC42,CELA3A,CELA3B,WNT4,ZBTB40"
TCGA.AD.6890	1	22330538	39886939	4427	-0.342	NEUTRAL	NA	236	Too-Many
TCGA.AZ.6606	1	22330538	85974029	18880	0.0076	NEUTRAL	NA	535	Too-Many
TCGA.AF.A56L	1	22330538	249198691	63568	-0.1725	NEUTRAL	NA	1713	Too-Many
TCGA.CK.5914.01A	1	22336544	22456058	11	-0.4962	NEUTRAL	NA	3	"CDC42,CELA3A,WNT4"
TCGA.G4.6294	1	22345092	249198691	63725	0	NEUTRAL	NA	1712	Too-Many
TCGA.AG.3909.01A	1	22404950	23647989	91	0.0648	NEUTRAL	NA	14	"C1QA,C1QB,C1QC,C1orf234,CDC42,EPHA8,EPHB2,HNRNPR,HTR1D,KDM1A,LACTBL1,LUZP1,WNT4,ZBTB40"
TCGA.CM.4747	1	22537648	37752972	3805	-0.4615	NEUTRAL	NA	207	Too-Many
TCGA.AG.A01W.01A	1	22700523	22800370	28	-0.0263	NEUTRAL	NA	1	ZBTB40
TCGA.CK.5914.01A	1	22816490	22852648	17	0.3485	NEUTRAL	NA	1	ZBTB40
TCGA.AG.3891.01A	1	22816490	22927742	30	-0.1308	NEUTRAL	NA	2	"EPHA8,ZBTB40"
TCGA.AA.3858	1	22831960	26402022	910	-0.2098	NEUTRAL	NA	55	"ASAP3,AUNIP,C1QA,C1QB,C1QC,C1orf234,CLIC4,CNR2,E2F2,EPHA8,EPHB2,EXTL1,FUCA1,GALE,GRHL3,HMGCL,HNRNPR,HTR1D,ID3,IFNLR1,IL22RA1,KDM1A,LACTBL1,LDLRAP1,LUZP1,LYPLA2,MAN1C1,MTFR1L,MYOM3,NCMAP,NIPAL3,PAFAH2,PAQR7,PITHD1,PNRC2,RCAN3,RHCE,RHD,RPL11,RSRP1,RUNX3,SEPN1,SLC30A2,SRRM1,SRSF10,STMN1,STPG1,SYF2,TCEA3,TCEB3,TMEM50A,TMEM57,TRIM63,ZBTB40,ZNF436"
TCGA.AG.A008.01A	1	22895718	22924584	8	-0.1936	NEUTRAL	NA	1	EPHA8
TCGA.AA.A01Q.01A	1	22964059	23239903	21	-0.3774	NEUTRAL	NA	4	"C1QA,C1QB,C1QC,EPHB2"
TCGA.AG.3891.01A	1	22964059	26795356	464	0.1942	NEUTRAL	NA	66	"AIM1L,ASAP3,AUNIP,C1QA,C1QB,C1QC,C1orf234,CATSPER4,CD52,CEP85,CLIC4,CNKSR1,CNR2,DHDDS,E2F2,EPHB2,EXTL1,FAM110D,FUCA1,GALE,GRHL3,HMGCL,HNRNPR,HTR1D,ID3,IFNLR1,IL22RA1,KDM1A,LACTBL1,LDLRAP1,LIN28A,LUZP1,LYPLA2,MAN1C1,MTFR1L,MYOM3,NCMAP,NIPAL3,PAFAH2,PAQR7,PDIK1L,PITHD1,PNRC2,RCAN3,RHCE,RHD,RPL11,RSRP1,RUNX3,SEPN1,SH3BGRL3,SLC30A2,SRRM1,SRSF10,STMN1,STPG1,SYF2,TCEA3,TCEB3,TMEM50A,TMEM57,TRIM63,UBXN11,ZNF436,ZNF593,ZNF683"
TCGA.AG.A01W.01A	1	23105038	23654910	75	-0.4094	NEUTRAL	NA	7	"C1orf234,EPHB2,HNRNPR,HTR1D,KDM1A,LACTBL1,LUZP1"
TCGA.DM.A28H	1	23115938	23198618	44	-0.3753	NEUTRAL	NA	1	EPHB2
TCGA.CK.5914.01A	1	23191348	23417631	42	0.0833	NEUTRAL	NA	5	"C1orf234,EPHB2,KDM1A,LACTBL1,LUZP1"
TCGA.DM.A28H	1	23199310	26504755	788	0.0411	NEUTRAL	NA	54	"ASAP3,AUNIP,C1orf234,CLIC4,CNKSR1,CNR2,E2F2,EPHB2,EXTL1,FAM110D,FUCA1,GALE,GRHL3,HMGCL,HNRNPR,HTR1D,ID3,IFNLR1,IL22RA1,KDM1A,LACTBL1,LDLRAP1,LUZP1,LYPLA2,MAN1C1,MTFR1L,MYOM3,NCMAP,NIPAL3,PAFAH2,PAQR7,PDIK1L,PITHD1,PNRC2,RCAN3,RHCE,RHD,RPL11,RSRP1,RUNX3,SEPN1,SLC30A2,SRRM1,SRSF10,STMN1,STPG1,SYF2,TCEA3,TCEB3,TMEM50A,TMEM57,TRIM63,ZNF436,ZNF593"
TCGA.AA.A010.01A	1	23356940	23520538	25	-0.1183	NEUTRAL	NA	3	"HTR1D,KDM1A,LUZP1"
TCGA.AA.A01Q.01A	1	23356940	23659964	28	0.3234	NEUTRAL	NA	4	"HNRNPR,HTR1D,KDM1A,LUZP1"
TCGA.AF.2689	1	23386319	249198691	63327	-0.0063	NEUTRAL	NA	1702	Too-Many
TCGA.AG.A00C.01A	1	23519587	24134593	84	0.2499	NEUTRAL	NA	13	"ASAP3,E2F2,GALE,HMGCL,HNRNPR,HTR1D,ID3,LYPLA2,PITHD1,RPL11,TCEA3,TCEB3,ZNF436"
TCGA.AA.A010.01A	1	23636989	23857007	50	0.3698	NEUTRAL	NA	5	"ASAP3,E2F2,HNRNPR,TCEA3,ZNF436"
TCGA.AG.3909.01A	1	23650030	24018216	49	-0.4852	NEUTRAL	NA	6	"ASAP3,E2F2,HNRNPR,ID3,TCEA3,ZNF436"
TCGA.AA.A00D.01A	1	23650030	24710342	118	-0.2665	NEUTRAL	NA	21	"ASAP3,CNR2,E2F2,FUCA1,GALE,GRHL3,HMGCL,HNRNPR,ID3,IFNLR1,IL22RA1,LYPLA2,MYOM3,PITHD1,PNRC2,RPL11,SRSF10,STPG1,TCEA3,TCEB3,ZNF436"
TCGA.AA.A01Q.01A	1	23664197	24191929	83	-0.1508	NEUTRAL	NA	13	"ASAP3,E2F2,FUCA1,GALE,HMGCL,HNRNPR,ID3,LYPLA2,PITHD1,RPL11,TCEA3,TCEB3,ZNF436"
TCGA.AA.A00N.01A	1	23694381	24018216	45	-0.2617	NEUTRAL	NA	5	"ASAP3,E2F2,ID3,TCEA3,ZNF436"
TCGA.CK.5914.01A	1	23710773	24018216	41	-0.368	NEUTRAL	NA	4	"ASAP3,E2F2,ID3,TCEA3"
TCGA.AG.4009.01A	1	23885389	24298293	52	-0.5057	NEUTRAL	NA	11	"CNR2,FUCA1,GALE,HMGCL,ID3,LYPLA2,PITHD1,PNRC2,RPL11,SRSF10,TCEB3"
TCGA.AA.A010.01A	1	23885389	24389579	61	-0.1271	NEUTRAL	NA	12	"CNR2,FUCA1,GALE,HMGCL,ID3,LYPLA2,MYOM3,PITHD1,PNRC2,RPL11,SRSF10,TCEB3"
TCGA.AG.A01W.01A	1	24064517	24270972	21	-0.2456	NEUTRAL	NA	7	"CNR2,FUCA1,GALE,HMGCL,LYPLA2,PITHD1,TCEB3"
TCGA.F4.6570	1	24181040	247936782	62961	-0.0059	NEUTRAL	NA	1650	Too-Many
TCGA.CK.5914.01A	1	24194351	24434939	38	-0.5017	NEUTRAL	NA	5	"CNR2,FUCA1,MYOM3,PNRC2,SRSF10"
TCGA.AG.A01W.01A	1	24304969	26230492	195	-0.4818	NEUTRAL	NA	25	"AUNIP,CLIC4,GRHL3,IFNLR1,IL22RA1,LDLRAP1,MAN1C1,MTFR1L,MYOM3,NCMAP,NIPAL3,PAQR7,RCAN3,RHCE,RHD,RSRP1,RUNX3,SEPN1,SRRM1,SRSF10,STMN1,STPG1,SYF2,TMEM50A,TMEM57"
TCGA.AA.3982	1	24345749	30445630	1302	0.3282	NEUTRAL	NA	92	"AHDC1,AIM1L,ARID1A,ATPIF1,AUNIP,CATSPER4,CD164L2,CD52,CEP85,CLIC4,CNKSR1,DHDDS,DNAJC8,EPB41,EXTL1,EYA3,FAM110D,FAM46B,FAM76A,FCN3,FGR,GMEB1,GPATCH3,GPN2,GPR3,GRHL3,HMGN2,IFI6,IFNLR1,IL22RA1,KDF1,LDLRAP1,LIN28A,MAN1C1,MAP3K6,MECR,MED18,MTFR1L,MYOM3,NCMAP,NIPAL3,NR0B2,NUDC,OPRD1,PAFAH2,PAQR7,PDIK1L,PHACTR4,PIGV,PPP1R8,PTAFR,PTPRU,RAB42,RCAN3,RCC1,RHCE,RHD,RPA2,RPS6KA1,RSRP1,RUNX3,SEPN1,SESN2,SFN,SH3BGRL3,SLC30A2,SLC9A1,SMPDL3B,SRRM1,SRSF4,STMN1,STPG1,STX12,SYF2,SYTL1,TAF12,THEMIS2,TMEM200B,TMEM222,TMEM50A,TMEM57,TRIM63,TRNAU1AP,TRNP1,UBXN11,WASF2,WDTC1,XKR8,YTHDF2,ZDHHC18,ZNF593,ZNF683"
TCGA.AA.A00N.01A	1	24383802	24401768	14	-0.3668	NEUTRAL	NA	1	MYOM3
TCGA.AG.3909.01A	1	24402612	24795427	68	0.1105	NEUTRAL	NA	6	"GRHL3,IFNLR1,IL22RA1,MYOM3,NIPAL3,STPG1"
TCGA.AG.A00C.01A	1	24406528	24790473	63	-0.0703	NEUTRAL	NA	6	"GRHL3,IFNLR1,IL22RA1,MYOM3,NIPAL3,STPG1"
TCGA.AG.A01L.01A	1	24415980	91866503	4667	-0.1072	NEUTRAL	NA	535	Too-Many
TCGA.AA.A01Q.01A	1	24460653	25696908	104	0.0149	NEUTRAL	NA	15	"CLIC4,GRHL3,IFNLR1,IL22RA1,NCMAP,NIPAL3,RCAN3,RHCE,RHD,RSRP1,RUNX3,SRRM1,STPG1,SYF2,TMEM50A"
TCGA.AG.4009.01A	1	24485917	27429121	352	0.0322	NEUTRAL	NA	53	"AIM1L,ARID1A,AUNIP,CATSPER4,CD52,CEP85,CLIC4,CNKSR1,DHDDS,EXTL1,FAM110D,FAM46B,GPATCH3,GPN2,GRHL3,HMGN2,IFNLR1,KDF1,LDLRAP1,LIN28A,MAN1C1,MTFR1L,NCMAP,NIPAL3,NR0B2,NUDC,PAFAH2,PAQR7,PDIK1L,PIGV,RCAN3,RHCE,RHD,RPS6KA1,RSRP1,RUNX3,SEPN1,SFN,SH3BGRL3,SLC30A2,SLC9A1,SRRM1,STMN1,STPG1,SYF2,TMEM50A,TMEM57,TRIM63,TRNP1,UBXN11,ZDHHC18,ZNF593,ZNF683"
TCGA.CK.5914.01A	1	24664116	24795427	33	-0.0718	NEUTRAL	NA	3	"GRHL3,NIPAL3,STPG1"
TCGA.AA.A02K.01A	1	24768506	26603588	213	-0.3325	NEUTRAL	NA	29	"AUNIP,CATSPER4,CEP85,CLIC4,CNKSR1,EXTL1,FAM110D,LDLRAP1,MAN1C1,MTFR1L,NCMAP,NIPAL3,PAFAH2,PAQR7,PDIK1L,RCAN3,RHCE,RHD,RSRP1,RUNX3,SEPN1,SLC30A2,SRRM1,STMN1,SYF2,TMEM50A,TMEM57,TRIM63,ZNF593"
TCGA.AA.A010.01A	1	24785323	24861534	9	-0.3407	NEUTRAL	NA	2	"NIPAL3,RCAN3"
TCGA.AG.A00C.01A	1	24792437	25688940	53	0.2761	NEUTRAL	NA	11	"CLIC4,NCMAP,NIPAL3,RCAN3,RHCE,RHD,RSRP1,RUNX3,SRRM1,SYF2,TMEM50A"
TCGA.AA.A00D.01A	1	24795427	36230792	1076	-0.3758	NEUTRAL	NA	158	Too-Many
TCGA.AG.3909.01A	1	24840811	25683213	58	-0.4679	NEUTRAL	NA	9	"CLIC4,NCMAP,RCAN3,RHD,RSRP1,RUNX3,SRRM1,SYF2,TMEM50A"
TCGA.CK.5914.01A	1	24981307	25290933	22	-0.2722	NEUTRAL	NA	3	"CLIC4,RUNX3,SRRM1"
TCGA.G4.6322	1	25366986	78908230	15600	-0.0091	NEUTRAL	NA	473	Too-Many
TCGA.AG.A008.01A	1	25611012	25655321	8	0.0724	NEUTRAL	NA	1	RHD
TCGA.CK.5914.01A	1	25648350	26107384	48	-0.2781	NEUTRAL	NA	6	"LDLRAP1,MAN1C1,RHCE,RHD,TMEM50A,TMEM57"
TCGA.AG.3909.01A	1	25687083	26135021	43	0.2191	NEUTRAL	NA	6	"LDLRAP1,MAN1C1,RHCE,SEPN1,TMEM50A,TMEM57"
TCGA.AA.3862.01A	1	25688940	47013340	2546	0.0929	NEUTRAL	NA	303	Too-Many
TCGA.AA.3861.01A	1	25688940	57159395	3333	0.1423	NEUTRAL	NA	384	Too-Many
TCGA.AG.A00C.01A	1	25696908	26107384	37	-0.1027	NEUTRAL	NA	4	"LDLRAP1,MAN1C1,RHCE,TMEM57"
TCGA.AA.A01Q.01A	1	25701782	25824726	18	0.3644	NEUTRAL	NA	2	"RHCE,TMEM57"
TCGA.AA.A00N.01A	1	25737784	25784885	8	-0.4665	NEUTRAL	NA	2	"RHCE,TMEM57"
TCGA.AA.A010.01A	1	25810567	26090312	20	0.1515	NEUTRAL	NA	3	"LDLRAP1,MAN1C1,TMEM57"
TCGA.AA.A01Q.01A	1	25944262	26098097	8	-0.2909	NEUTRAL	NA	1	MAN1C1
TCGA.AA.A01Q.01A	1	26104569	26190022	11	0.2423	NEUTRAL	NA	5	"AUNIP,MAN1C1,MTFR1L,PAQR7,SEPN1"
TCGA.AG.A00C.01A	1	26109048	26231060	24	0.3657	NEUTRAL	NA	6	"AUNIP,MAN1C1,MTFR1L,PAQR7,SEPN1,STMN1"
TCGA.AG.3909.01A	1	26135470	26149530	7	-0.3797	NEUTRAL	NA	2	"MTFR1L,SEPN1"
TCGA.AA.A010.01A	1	26185730	26231060	8	-0.3624	NEUTRAL	NA	3	"AUNIP,PAQR7,STMN1"
TCGA.AA.A01Q.01A	1	26227438	26356049	17	-0.3105	NEUTRAL	NA	3	"EXTL1,PAFAH2,STMN1"
TCGA.AG.A01W.01A	1	26231428	26244029	11	0.2005	NEUTRAL	NA	1	STMN1
TCGA.AG.A00C.01A	1	26288436	26356049	13	-0.3499	NEUTRAL	NA	2	"EXTL1,PAFAH2"
TCGA.AG.3909.01A	1	26288436	26883442	132	-0.3847	NEUTRAL	NA	19	"AIM1L,CATSPER4,CD52,CEP85,CNKSR1,DHDDS,EXTL1,FAM110D,HMGN2,LIN28A,PAFAH2,PDIK1L,RPS6KA1,SH3BGRL3,SLC30A2,TRIM63,UBXN11,ZNF593,ZNF683"
TCGA.AA.A00N.01A	1	26356915	26795356	117	-0.4874	NEUTRAL	NA	16	"AIM1L,CATSPER4,CD52,CEP85,CNKSR1,DHDDS,EXTL1,FAM110D,LIN28A,PDIK1L,SH3BGRL3,SLC30A2,TRIM63,UBXN11,ZNF593,ZNF683"
TCGA.AG.A00C.01A	1	26356915	27589606	189	0.1057	NEUTRAL	NA	31	"AIM1L,ARID1A,CATSPER4,CD52,CEP85,CNKSR1,DHDDS,EXTL1,FAM110D,FAM46B,GPATCH3,GPN2,HMGN2,KDF1,LIN28A,NR0B2,NUDC,PDIK1L,PIGV,RPS6KA1,SFN,SH3BGRL3,SLC30A2,SLC9A1,TRIM63,TRNP1,UBXN11,WDTC1,ZDHHC18,ZNF593,ZNF683"
TCGA.AA.A010.01A	1	26380349	26392712	7	-0.0803	NEUTRAL	NA	1	TRIM63
TCGA.AA.A01Q.01A	1	26383692	26795356	86	-0.1773	NEUTRAL	NA	14	"AIM1L,CATSPER4,CD52,CEP85,CNKSR1,DHDDS,FAM110D,LIN28A,PDIK1L,SH3BGRL3,TRIM63,UBXN11,ZNF593,ZNF683"
TCGA.AA.A010.01A	1	26508785	26598441	28	-0.1685	NEUTRAL	NA	3	"CATSPER4,CEP85,CNKSR1"
TCGA.AA.A01K.01A	1	26526328	100527344	4776	-0.3133	NEUTRAL	NA	545	Too-Many
TCGA.AA.A004.01A	1	26526328	109795222	5125	-0.0978	NEUTRAL	NA	587	Too-Many
TCGA.AA.A01D.01A	1	26526328	249210793	13623	0.0659	NEUTRAL	NA	1652	Too-Many
TCGA.AA.A00A.01A	1	26528916	26648403	18	0.0211	NEUTRAL	NA	6	"AIM1L,CATSPER4,CD52,CEP85,SH3BGRL3,UBXN11"
TCGA.AG.A01W.01A	1	26530556	26560722	12	-0.3515	NEUTRAL	NA	1	CEP85
TCGA.AA.3858	1	26539055	27041713	98	-0.224	NEUTRAL	NA	11	"AIM1L,ARID1A,CD52,CEP85,DHDDS,HMGN2,LIN28A,RPS6KA1,SH3BGRL3,UBXN11,ZNF683"
TCGA.AA.A02K.01A	1	26644436	27679756	160	-0.3164	NEUTRAL	NA	23	"AIM1L,ARID1A,CD52,DHDDS,FAM46B,GPATCH3,GPN2,HMGN2,KDF1,LIN28A,NR0B2,NUDC,PIGV,RPS6KA1,SFN,SLC9A1,SYTL1,TMEM222,TRNP1,UBXN11,WDTC1,ZDHHC18,ZNF683"
TCGA.AA.A00A.01A	1	26650596	28060492	205	-0.3503	NEUTRAL	NA	30	"AHDC1,AIM1L,ARID1A,CD164L2,DHDDS,FAM46B,FAM76A,FCN3,FGR,GPATCH3,GPN2,GPR3,HMGN2,IFI6,KDF1,LIN28A,MAP3K6,NR0B2,NUDC,PIGV,RPS6KA1,SFN,SLC9A1,SYTL1,TMEM222,TRNP1,WASF2,WDTC1,ZDHHC18,ZNF683"
TCGA.AG.A01W.01A	1	26656655	26735928	9	-0.1146	NEUTRAL	NA	2	"AIM1L,ZNF683"
TCGA.AG.A01W.01A	1	26744943	27088010	50	-0.505	NEUTRAL	NA	5	"ARID1A,DHDDS,HMGN2,LIN28A,RPS6KA1"
TCGA.AA.A010.01A	1	26769158	26801520	11	-0.1874	NEUTRAL	NA	2	"DHDDS,HMGN2"
TCGA.AA.A010.01A	1	26885246	26900523	9	-0.0963	NEUTRAL	NA	1	RPS6KA1
TCGA.AG.3909.01A	1	26885246	27102071	26	0.3084	NEUTRAL	NA	2	"ARID1A,RPS6KA1"
TCGA.AA.A00F.01A	1	26897890	27088606	11	-0.5032	NEUTRAL	NA	2	"ARID1A,RPS6KA1"
TCGA.CK.5914.01A	1	26897890	27098939	17	0.1404	NEUTRAL	NA	2	"ARID1A,RPS6KA1"
TCGA.AG.3891.01A	1	26897890	27206105	35	0.1801	NEUTRAL	NA	6	"ARID1A,GPN2,PIGV,RPS6KA1,SFN,ZDHHC18"
TCGA.AA.A01Q.01A	1	26897890	27338856	58	-0.031	NEUTRAL	NA	12	"ARID1A,FAM46B,GPATCH3,GPN2,KDF1,NR0B2,NUDC,PIGV,RPS6KA1,SFN,TRNP1,ZDHHC18"
TCGA.AA.A010.01A	1	27088606	27106087	13	-0.013	NEUTRAL	NA	1	ARID1A
TCGA.AA.A00F.01A	1	27089422	27426768	47	-0.0873	NEUTRAL	NA	12	"ARID1A,FAM46B,GPATCH3,GPN2,KDF1,NR0B2,NUDC,PIGV,SFN,SLC9A1,TRNP1,ZDHHC18"
TCGA.AA.A00N.01A	1	27092670	28316169	204	-0.4898	NEUTRAL	NA	31	"AHDC1,ARID1A,CD164L2,EYA3,FAM46B,FAM76A,FCN3,FGR,GPATCH3,GPN2,GPR3,IFI6,KDF1,MAP3K6,NR0B2,NUDC,PIGV,PPP1R8,RPA2,SFN,SLC9A1,SMPDL3B,STX12,SYTL1,THEMIS2,TMEM222,TRNP1,WASF2,WDTC1,XKR8,ZDHHC18"
TCGA.AG.A01W.01A	1	27120868	27544427	43	-0.4728	NEUTRAL	NA	11	"FAM46B,GPATCH3,GPN2,KDF1,NR0B2,NUDC,PIGV,SFN,SLC9A1,TRNP1,ZDHHC18"
TCGA.AA.A010.01A	1	27189664	27648641	56	0.3739	NEUTRAL	NA	11	"FAM46B,GPATCH3,GPN2,KDF1,NR0B2,NUDC,SFN,SLC9A1,TMEM222,TRNP1,WDTC1"
TCGA.D5.6541	1	27191410	249198691	62500	-0.0022	NEUTRAL	NA	1636	Too-Many
TCGA.AA.3858	1	27242008	152954376	29462	-0.0738	NEUTRAL	NA	836	Too-Many
TCGA.AG.3891.01A	1	27426768	27436066	7	-0.5128	NEUTRAL	NA	1	SLC9A1
TCGA.CK.5914.01A	1	27426768	27589606	15	-0.2899	NEUTRAL	NA	2	"SLC9A1,WDTC1"
TCGA.AA.A00F.01A	1	27427634	27440590	11	-0.4059	NEUTRAL	NA	1	SLC9A1
TCGA.AG.4009.01A	1	27429661	27589606	8	-0.1428	NEUTRAL	NA	2	"SLC9A1,WDTC1"
TCGA.AH.6644	1	27468018	144876744	28213	-0.0123	NEUTRAL	NA	690	Too-Many
TCGA.AA.A00F.01A	1	27480452	31211740	265	-0.1279	NEUTRAL	NA	40	"AHDC1,ATPIF1,CD164L2,DNAJC8,EPB41,EYA3,FAM76A,FCN3,FGR,GMEB1,GPR3,IFI6,LAPTM5,MAP3K6,MATN1,MECR,MED18,OPRD1,PHACTR4,PPP1R8,PTAFR,PTPRU,RAB42,RCC1,RPA2,SESN2,SLC9A1,SMPDL3B,SRSF4,STX12,SYTL1,TAF12,THEMIS2,TMEM200B,TMEM222,TRNAU1AP,WASF2,WDTC1,XKR8,YTHDF2"
TCGA.AG.A01W.01A	1	27546450	27563654	26	0.043	NEUTRAL	NA	1	WDTC1
TCGA.AA.A01Q.01A	1	27608662	27661826	19	-0.1504	NEUTRAL	NA	2	"TMEM222,WDTC1"
TCGA.A6.5666	1	27610068	249198691	62405	0.0016	NEUTRAL	NA	1628	Too-Many
TCGA.AG.4009.01A	1	27620958	27684161	27	-0.3366	NEUTRAL	NA	4	"MAP3K6,SYTL1,TMEM222,WDTC1"
TCGA.AA.3556	1	27659964	56946798	7691	0.0274	NEUTRAL	NA	341	Too-Many
TCGA.AA.A02K.01A	1	27691067	31845730	315	-0.3107	NEUTRAL	NA	42	"AHDC1,ATPIF1,CD164L2,DNAJC8,EPB41,EYA3,FABP3,FAM76A,FCN3,FGR,GMEB1,GPR3,IFI6,LAPTM5,MAP3K6,MATN1,MECR,MED18,NKAIN1,OPRD1,PHACTR4,PPP1R8,PTAFR,PTPRU,PUM1,RAB42,RCC1,RPA2,SDC3,SESN2,SMPDL3B,SNRNP40,SRSF4,STX12,TAF12,THEMIS2,TMEM200B,TRNAU1AP,WASF2,XKR8,YTHDF2,ZCCHC17"
TCGA.AA.A00L.01A	1	27691083	32653505	381	-0.3056	NEUTRAL	NA	54	"ADGRB2,AHDC1,ATPIF1,CD164L2,COL16A1,DNAJC8,EPB41,EYA3,FABP3,FAM76A,FCN3,FGR,GMEB1,GPR3,HCRTR1,IFI6,KHDRBS1,KPNA6,LAPTM5,MAP3K6,MATN1,MECR,MED18,NKAIN1,OPRD1,PEF1,PHACTR4,PPP1R8,PTAFR,PTP4A2,PTPRU,PUM1,RAB42,RCC1,RPA2,SDC3,SERINC2,SESN2,SMPDL3B,SNRNP40,SPOCD1,SRSF4,STX12,TAF12,THEMIS2,TINAGL1,TMEM200B,TMEM39B,TRNAU1AP,TXLNA,WASF2,XKR8,YTHDF2,ZCCHC17"
TCGA.AG.4009.01A	1	27695678	27708599	9	-0.4457	NEUTRAL	NA	2	"CD164L2,FCN3"
TCGA.AA.A01Q.01A	1	27699595	27720851	11	-0.4832	NEUTRAL	NA	3	"CD164L2,FCN3,GPR3"
TCGA.AG.3906.01A	1	27700803	28167547	48	-0.3255	NEUTRAL	NA	10	"AHDC1,CD164L2,FAM76A,FCN3,FGR,GPR3,IFI6,PPP1R8,STX12,WASF2"
TCGA.AF.3914.01A	1	27706486	29601943	209	-0.0761	NEUTRAL	NA	32	"AHDC1,ATPIF1,CD164L2,DNAJC8,EPB41,EYA3,FAM76A,FGR,GMEB1,GPR3,IFI6,MECR,MED18,OPRD1,PHACTR4,PPP1R8,PTAFR,PTPRU,RAB42,RCC1,RPA2,SESN2,SMPDL3B,SRSF4,STX12,TAF12,THEMIS2,TMEM200B,TRNAU1AP,WASF2,XKR8,YTHDF2"
TCGA.AA.3666	1	27716696	144549928	28249	0.0654	NEUTRAL	NA	680	Too-Many
TCGA.AG.4009.01A	1	27720253	27755219	10	0.1274	NEUTRAL	NA	2	"GPR3,WASF2"
TCGA.AA.A01Q.01A	1	27734646	27755219	8	0.2322	NEUTRAL	NA	1	WASF2
TCGA.CK.5914.01A	1	27734646	27755219	8	0.1747	NEUTRAL	NA	1	WASF2
TCGA.AA.A010.01A	1	27734646	27878368	11	-0.1747	NEUTRAL	NA	2	"AHDC1,WASF2"
TCGA.AG.A00C.01A	1	27734646	27878368	11	-0.0287	NEUTRAL	NA	2	"AHDC1,WASF2"
TCGA.F4.6461	1	27755908	58316853	8328	-0.0305	NEUTRAL	NA	341	Too-Many
TCGA.AA.A01Q.01A	1	27873833	28060492	18	-0.4705	NEUTRAL	NA	4	"AHDC1,FAM76A,FGR,IFI6"
TCGA.AA.A010.01A	1	27992869	28159251	22	0.1899	NEUTRAL	NA	4	"FAM76A,IFI6,PPP1R8,STX12"
TCGA.AA.A00A.01A	1	28071138	28138459	11	0.1794	NEUTRAL	NA	2	"FAM76A,STX12"
TCGA.AA.A01Q.01A	1	28071138	28157277	15	0.2988	NEUTRAL	NA	3	"FAM76A,PPP1R8,STX12"
TCGA.AG.4009.01A	1	28071138	28169658	17	0.0281	NEUTRAL	NA	3	"FAM76A,PPP1R8,STX12"
TCGA.AZ.4614	1	28093524	147825661	28289	-0.0931	NEUTRAL	NA	706	Too-Many
TCGA.AA.A00A.01A	1	28144297	43408857	1365	-0.3312	NEUTRAL	NA	188	Too-Many
TCGA.AA.A01Q.01A	1	28159251	28323764	33	-0.0616	NEUTRAL	NA	6	"EYA3,PPP1R8,RPA2,SMPDL3B,THEMIS2,XKR8"
TCGA.AG.3906.01A	1	28169658	28224082	13	0.0506	NEUTRAL	NA	3	"PPP1R8,RPA2,THEMIS2"
TCGA.AG.3909.01A	1	28206137	28861513	77	0.0764	NEUTRAL	NA	12	"ATPIF1,DNAJC8,EYA3,MED18,PHACTR4,PTAFR,RCC1,RPA2,SESN2,SMPDL3B,THEMIS2,XKR8"
TCGA.AG.4009.01A	1	28208485	28220473	5	-0.2176	NEUTRAL	NA	2	"RPA2,THEMIS2"
TCGA.AG.A00C.01A	1	28212318	28822954	70	0.0134	NEUTRAL	NA	11	"ATPIF1,DNAJC8,EYA3,MED18,PHACTR4,PTAFR,RPA2,SESN2,SMPDL3B,THEMIS2,XKR8"
TCGA.AG.4009.01A	1	28220803	29611193	153	-0.006	NEUTRAL	NA	22	"ATPIF1,DNAJC8,EPB41,EYA3,GMEB1,MECR,MED18,OPRD1,PHACTR4,PTAFR,PTPRU,RAB42,RCC1,RPA2,SESN2,SMPDL3B,SRSF4,TAF12,TMEM200B,TRNAU1AP,XKR8,YTHDF2"
TCGA.CK.5914.01A	1	28240552	28818130	63	-0.3059	NEUTRAL	NA	10	"ATPIF1,DNAJC8,EYA3,MED18,PHACTR4,PTAFR,RPA2,SESN2,SMPDL3B,XKR8"
TCGA.AA.A01Q.01A	1	28326428	28800016	27	0.3664	NEUTRAL	NA	7	"ATPIF1,DNAJC8,EYA3,MED18,PHACTR4,PTAFR,SESN2"
TCGA.AM.5820	1	28437823	29418959	112	-0.1157	NEUTRAL	NA	14	"ATPIF1,DNAJC8,EPB41,GMEB1,MED18,OPRD1,PHACTR4,PTAFR,RAB42,RCC1,SESN2,TAF12,TRNAU1AP,YTHDF2"
TCGA.AG.3906.01A	1	28607193	28906999	37	-0.166	NEUTRAL	NA	5	"MED18,PHACTR4,RCC1,SESN2,TRNAU1AP"
TCGA.AA.A01Q.01A	1	28856319	28929982	19	-0.3485	NEUTRAL	NA	4	"RAB42,RCC1,TAF12,TRNAU1AP"
TCGA.AA.A010.01A	1	28879560	28891173	5	0.2224	NEUTRAL	NA	1	TRNAU1AP
TCGA.D5.6931	1	28888100	29618777	89	-0.3814	NEUTRAL	NA	11	"EPB41,GMEB1,MECR,OPRD1,PTPRU,RAB42,SRSF4,TAF12,TMEM200B,TRNAU1AP,YTHDF2"
TCGA.AG.A00C.01A	1	28891173	29040580	24	0.2408	NEUTRAL	NA	4	"GMEB1,RAB42,TAF12,TRNAU1AP"
TCGA.AG.A01W.01A	1	28913211	31817328	147	-0.4851	NEUTRAL	NA	17	"EPB41,GMEB1,LAPTM5,MATN1,MECR,NKAIN1,OPRD1,PTPRU,PUM1,RAB42,SDC3,SNRNP40,SRSF4,TAF12,TMEM200B,YTHDF2,ZCCHC17"
TCGA.AG.3909.01A	1	28929982	29064086	15	0.2818	NEUTRAL	NA	3	"GMEB1,TAF12,YTHDF2"
TCGA.AA.A01Q.01A	1	28931832	29533236	46	0.2267	NEUTRAL	NA	8	"EPB41,GMEB1,MECR,OPRD1,SRSF4,TAF12,TMEM200B,YTHDF2"
TCGA.AA.A00N.01A	1	28939712	29063556	13	-0.0903	NEUTRAL	NA	3	"GMEB1,TAF12,YTHDF2"
TCGA.AG.3906.01A	1	28944405	29036992	10	-0.0208	NEUTRAL	NA	2	"GMEB1,TAF12"
TCGA.DC.6154	1	29045122	249198691	62093	-0.0015	NEUTRAL	NA	1598	Too-Many
TCGA.AA.3526	1	29047109	249198691	62233	0	NEUTRAL	NA	1598	Too-Many
TCGA.AG.3909.01A	1	29185469	29557195	37	0.0524	NEUTRAL	NA	5	"EPB41,MECR,OPRD1,SRSF4,TMEM200B"
TCGA.AG.A00C.01A	1	29313923	29652046	61	-0.0011	NEUTRAL	NA	5	"EPB41,MECR,PTPRU,SRSF4,TMEM200B"
TCGA.AA.A00N.01A	1	29424271	29601943	27	-0.4081	NEUTRAL	NA	5	"EPB41,MECR,PTPRU,SRSF4,TMEM200B"
TCGA.AM.5820	1	29429003	31385186	802	0.3024	NEUTRAL	NA	8	"EPB41,LAPTM5,MATN1,MECR,PTPRU,SDC3,SRSF4,TMEM200B"
TCGA.CK.5914.01A	1	29474895	31211740	56	-0.4737	NEUTRAL	NA	5	"LAPTM5,MATN1,MECR,PTPRU,SRSF4"
TCGA.AA.A02J.01A	1	29485836	156214884	7251	-0.0773	NEUTRAL	NA	907	Too-Many
TCGA.A6.2682	1	29507646	249198691	61075	0	NEUTRAL	NA	1594	Too-Many
TCGA.AA.A010.01A	1	29508107	29533236	8	-0.0283	NEUTRAL	NA	2	"MECR,SRSF4"
TCGA.AG.3906.01A	1	29527854	29581740	7	0.0517	NEUTRAL	NA	2	"MECR,PTPRU"
TCGA.AA.A01Q.01A	1	29542466	31351419	50	-0.1481	NEUTRAL	NA	5	"LAPTM5,MATN1,MECR,PTPRU,SDC3"
TCGA.CM.4752	1	29571757	30894529	537	0.0922	NEUTRAL	NA	1	PTPRU
TCGA.AA.3869	1	29579156	30923422	542	-0.3692	NEUTRAL	NA	1	PTPRU
TCGA.AG.3891.01A	1	29601943	29652046	23	0.0421	NEUTRAL	NA	1	PTPRU
TCGA.AG.3909.01A	1	29601943	31906884	94	0.0742	NEUTRAL	NA	10	"FABP3,LAPTM5,MATN1,NKAIN1,PTPRU,PUM1,SDC3,SERINC2,SNRNP40,ZCCHC17"
TCGA.D5.6931	1	29620755	144957814	27911	-0.0023	NEUTRAL	NA	653	Too-Many
TCGA.A6.A56B	1	30185087	36860799	1839	0.2872	NEUTRAL	NA	84	"A3GALT2,ADGRB2,ADPRHL2,AGO1,AGO3,AGO4,AK2,AZIN2,BSDC1,C1orf216,C1orf94,CCDC28B,CLSPN,COL16A1,COL8A2,CSMD2,DCDC2B,DLGAP3,EIF3I,EVA1B,FABP3,FAM167B,FAM229A,FNDC5,GJA4,GJB3,GJB4,GJB5,HCRTR1,HDAC1,HMGB4,HPCA,IQCC,KHDRBS1,KIAA0319L,KIAA1522,KPNA6,LAPTM5,LCK,LSM10,MAP7D1,MARCKSL1,MATN1,NCDN,NKAIN1,PEF1,PHC2,PSMB2,PTP4A2,PUM1,RBBP4,RNF19B,S100PBP,SDC3,SERINC2,SFPQ,SH3D21,SMIM12,SNRNP40,SPOCD1,STK40,SYNC,TEKT2,TFAP2E,THRAP3,TINAGL1,TMEM234,TMEM39B,TMEM54,TRAPPC3,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZCCHC17,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZNF362,ZSCAN20"
TCGA.AA.3982	1	30448216	30530416	39	-0.0634	NEUTRAL	NA	0	None
TCGA.AA.3982	1	30530884	30895851	181	0.2945	NEUTRAL	NA	0	None
TCGA.AA.3952	1	30692597	33981229	798	0.0448	NEUTRAL	NA	52	"A3GALT2,ADGRB2,AK2,AZIN2,BSDC1,CCDC28B,COL16A1,CSMD2,DCDC2B,EIF3I,FABP3,FAM167B,FAM229A,FNDC5,HCRTR1,HDAC1,HPCA,IQCC,KHDRBS1,KIAA1522,KPNA6,LAPTM5,LCK,MARCKSL1,MATN1,NKAIN1,PEF1,PHC2,PTP4A2,PUM1,RBBP4,RNF19B,S100PBP,SDC3,SERINC2,SNRNP40,SPOCD1,SYNC,TINAGL1,TMEM234,TMEM39B,TMEM54,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZCCHC17,ZNF362,ZSCAN20"
TCGA.AA.3518	1	30741495	34839500	1208	0.0025	NEUTRAL	NA	54	"A3GALT2,ADGRB2,AK2,AZIN2,BSDC1,C1orf94,CCDC28B,COL16A1,CSMD2,DCDC2B,EIF3I,FABP3,FAM167B,FAM229A,FNDC5,HCRTR1,HDAC1,HMGB4,HPCA,IQCC,KHDRBS1,KIAA1522,KPNA6,LAPTM5,LCK,MARCKSL1,MATN1,NKAIN1,PEF1,PHC2,PTP4A2,PUM1,RBBP4,RNF19B,S100PBP,SDC3,SERINC2,SNRNP40,SPOCD1,SYNC,TINAGL1,TMEM234,TMEM39B,TMEM54,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZCCHC17,ZNF362,ZSCAN20"
TCGA.AA.3972	1	30741495	37726251	1883	-0.221	NEUTRAL	NA	88	"A3GALT2,ADGRB2,ADPRHL2,AGO1,AGO3,AGO4,AK2,AZIN2,BSDC1,C1orf216,C1orf94,CCDC28B,CLSPN,COL16A1,COL8A2,CSF3R,CSMD2,DCDC2B,DLGAP3,EIF3I,EVA1B,FABP3,FAM167B,FAM229A,FNDC5,GJA4,GJB3,GJB4,GJB5,GRIK3,HCRTR1,HDAC1,HMGB4,HPCA,IQCC,KHDRBS1,KIAA0319L,KIAA1522,KPNA6,LAPTM5,LCK,LSM10,MAP7D1,MARCKSL1,MATN1,MRPS15,NCDN,NKAIN1,OSCP1,PEF1,PHC2,PSMB2,PTP4A2,PUM1,RBBP4,RNF19B,S100PBP,SDC3,SERINC2,SFPQ,SH3D21,SMIM12,SNRNP40,SPOCD1,STK40,SYNC,TEKT2,TFAP2E,THRAP3,TINAGL1,TMEM234,TMEM39B,TMEM54,TRAPPC3,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZCCHC17,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZNF362,ZSCAN20"
TCGA.AA.3667	1	30773655	63467956	9629	0.05	NEUTRAL	NA	328	Too-Many
TCGA.AA.3982	1	30917198	38619027	1989	0.2423	NEUTRAL	NA	106	Too-Many
TCGA.AA.3811	1	30917198	48473966	4580	0.0209	NEUTRAL	NA	243	Too-Many
TCGA.AA.3869	1	30923785	88252762	17566	-0.0825	NEUTRAL	NA	425	Too-Many
TCGA.D5.6531	1	31041972	49917083	4941	0.1717	NEUTRAL	NA	247	Too-Many
TCGA.AA.3678	1	31181638	149168797	27731	-0.0399	NEUTRAL	NA	686	Too-Many
TCGA.AA.A00N.01A	1	31186357	31211740	12	-0.3005	NEUTRAL	NA	2	"LAPTM5,MATN1"
TCGA.AG.3891.01A	1	31186357	31214437	12	-0.4954	NEUTRAL	NA	2	"LAPTM5,MATN1"
TCGA.AG.3611.01A	1	31186357	31230450	16	-0.3291	NEUTRAL	NA	2	"LAPTM5,MATN1"
TCGA.DM.A28M.01A	1	31186357	60309067	2942	0.1895	NEUTRAL	NA	317	Too-Many
TCGA.DM.A282.01A	1	31186357	86847918	4146	0.011	NEUTRAL	NA	417	Too-Many
TCGA.AG.A00C.01A	1	31187038	31194215	5	0.3369	NEUTRAL	NA	1	MATN1
TCGA.AG.4009.01A	1	31194215	31214437	7	-0.2201	NEUTRAL	NA	2	"LAPTM5,MATN1"
TCGA.AG.A00C.01A	1	31206632	31501581	32	-0.2767	NEUTRAL	NA	3	"LAPTM5,PUM1,SDC3"
TCGA.AA.A010.01A	1	31206632	31754169	45	-0.0708	NEUTRAL	NA	5	"LAPTM5,NKAIN1,PUM1,SDC3,SNRNP40"
TCGA.AG.3906.01A	1	31211740	31425032	14	0.1305	NEUTRAL	NA	3	"LAPTM5,PUM1,SDC3"
TCGA.AF.3914.01A	1	31211740	32793090	253	-0.0022	NEUTRAL	NA	27	"ADGRB2,CCDC28B,COL16A1,DCDC2B,EIF3I,FABP3,FAM167B,HCRTR1,HDAC1,IQCC,KHDRBS1,KPNA6,LAPTM5,LCK,NKAIN1,PEF1,PTP4A2,PUM1,SDC3,SERINC2,SNRNP40,SPOCD1,TINAGL1,TMEM234,TMEM39B,TXLNA,ZCCHC17"
TCGA.AA.A00F.01A	1	31212608	31478658	26	-0.5075	NEUTRAL	NA	3	"LAPTM5,PUM1,SDC3"
TCGA.CK.5914.01A	1	31212608	31501581	28	-0.0335	NEUTRAL	NA	3	"LAPTM5,PUM1,SDC3"
TCGA.AG.3891.01A	1	31215263	36565604	643	0.1746	NEUTRAL	NA	76	"A3GALT2,ADGRB2,ADPRHL2,AGO1,AGO3,AGO4,AK2,AZIN2,BSDC1,C1orf216,C1orf94,CCDC28B,CLSPN,COL16A1,COL8A2,CSMD2,DCDC2B,DLGAP3,EIF3I,FABP3,FAM167B,FAM229A,FNDC5,GJA4,GJB3,GJB4,GJB5,HCRTR1,HDAC1,HMGB4,HPCA,IQCC,KHDRBS1,KIAA0319L,KIAA1522,KPNA6,LAPTM5,LCK,MARCKSL1,NCDN,NKAIN1,PEF1,PHC2,PSMB2,PTP4A2,PUM1,RBBP4,RNF19B,S100PBP,SDC3,SERINC2,SFPQ,SMIM12,SNRNP40,SPOCD1,SYNC,TEKT2,TFAP2E,TINAGL1,TMEM234,TMEM39B,TMEM54,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZCCHC17,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZNF362,ZSCAN20"
TCGA.DC.6681	1	31267334	249198691	61328	0.0193	NEUTRAL	NA	1589	Too-Many
TCGA.AG.3611.01A	1	31346008	32087030	71	0.1632	NEUTRAL	NA	9	"FABP3,HCRTR1,NKAIN1,PUM1,SDC3,SERINC2,SNRNP40,TINAGL1,ZCCHC17"
TCGA.AG.A016.01A	1	31346008	147131025	6111	-0.0826	NEUTRAL	NA	676	Too-Many
TCGA.CM.6680	1	31385186	249198691	61283	0.0099	NEUTRAL	NA	1588	Too-Many
TCGA.AM.5820	1	31402147	31833705	86	-0.2004	NEUTRAL	NA	4	"NKAIN1,PUM1,SNRNP40,ZCCHC17"
TCGA.AG.4009.01A	1	31406009	31741957	30	-0.103	NEUTRAL	NA	3	"NKAIN1,PUM1,SNRNP40"
TCGA.CA.6715	1	31408055	188503624	40259	0.0091	NEUTRAL	NA	1190	Too-Many
TCGA.AG.3906.01A	1	31426519	31465198	9	-0.4212	NEUTRAL	NA	1	PUM1
TCGA.D5.5537	1	31451143	249198691	61217	0	NEUTRAL	NA	1588	Too-Many
TCGA.AG.3906.01A	1	31467854	32210224	119	0.0424	NEUTRAL	NA	11	"ADGRB2,COL16A1,FABP3,HCRTR1,NKAIN1,PEF1,PUM1,SERINC2,SNRNP40,TINAGL1,ZCCHC17"
TCGA.AA.A00N.01A	1	31479794	32042722	42	0.2263	NEUTRAL	NA	7	"FABP3,NKAIN1,PUM1,SERINC2,SNRNP40,TINAGL1,ZCCHC17"
TCGA.AA.A00F.01A	1	31479794	33992731	293	-0.1241	NEUTRAL	NA	49	"A3GALT2,ADGRB2,AK2,AZIN2,BSDC1,CCDC28B,COL16A1,CSMD2,DCDC2B,EIF3I,FABP3,FAM167B,FAM229A,FNDC5,HCRTR1,HDAC1,HPCA,IQCC,KHDRBS1,KIAA1522,KPNA6,LCK,MARCKSL1,NKAIN1,PEF1,PHC2,PTP4A2,PUM1,RBBP4,RNF19B,S100PBP,SERINC2,SNRNP40,SPOCD1,SYNC,TINAGL1,TMEM234,TMEM39B,TMEM54,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZCCHC17,ZNF362,ZSCAN20"
TCGA.CK.5914.01A	1	31532062	32042722	40	-0.4991	NEUTRAL	NA	7	"FABP3,NKAIN1,PUM1,SERINC2,SNRNP40,TINAGL1,ZCCHC17"
TCGA.AG.3727	1	31555265	96590674	19873	0.0101	NEUTRAL	NA	471	Too-Many
TCGA.AG.4021	1	31602423	94195025	18941	0.0086	NEUTRAL	NA	459	Too-Many
TCGA.AA.3530	1	31633307	189147179	40443	0.0435	NEUTRAL	NA	1189	Too-Many
TCGA.CM.6170	1	31633307	208540930	46477	-0.1929	NEUTRAL	NA	1330	Too-Many
TCGA.AA.A01Q.01A	1	31654454	32042722	36	0.1432	NEUTRAL	NA	6	"FABP3,NKAIN1,SERINC2,SNRNP40,TINAGL1,ZCCHC17"
TCGA.AA.3819	1	31722165	144880108	27158	0.0042	NEUTRAL	NA	647	Too-Many
TCGA.AG.A00C.01A	1	31740649	32161614	84	-0.0838	NEUTRAL	NA	8	"COL16A1,FABP3,HCRTR1,PEF1,SERINC2,SNRNP40,TINAGL1,ZCCHC17"
TCGA.AG.4009.01A	1	31744197	31845729	17	0.23	NEUTRAL	NA	3	"FABP3,SNRNP40,ZCCHC17"
TCGA.AG.A01W.01A	1	31821282	31859637	8	0.1577	NEUTRAL	NA	2	"FABP3,ZCCHC17"
TCGA.DY.A1H8	1	31822635	52182959	4958	-0.008	NEUTRAL	NA	250	Too-Many
TCGA.AM.5820	1	31837631	32266025	115	0.3657	NEUTRAL	NA	9	"ADGRB2,COL16A1,FABP3,HCRTR1,PEF1,SERINC2,SPOCD1,TINAGL1,ZCCHC17"
TCGA.AG.A01W.01A	1	31861665	31871311	6	-0.3857	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	1	31896488	32042722	9	-0.136	NEUTRAL	NA	2	"SERINC2,TINAGL1"
TCGA.AA.A02K.01A	1	31896504	40126730	1014	-0.0402	NEUTRAL	NA	110	Too-Many
TCGA.AA.A010.01A	1	31905774	32051332	8	-0.1148	NEUTRAL	NA	2	"SERINC2,TINAGL1"
TCGA.AG.A01W.01A	1	31932257	31974456	18	-0.3906	NEUTRAL	NA	0	None
TCGA.G5.6641	1	31972488	249198691	61139	0.1876	NEUTRAL	NA	1582	Too-Many
TCGA.DM.A285	1	31973845	35251734	887	0.128	NEUTRAL	NA	48	"A3GALT2,ADGRB2,AK2,AZIN2,BSDC1,C1orf94,CCDC28B,COL16A1,CSMD2,DCDC2B,EIF3I,FAM167B,FAM229A,FNDC5,GJB3,GJB4,GJB5,HCRTR1,HDAC1,HMGB4,HPCA,IQCC,KHDRBS1,KIAA1522,KPNA6,LCK,MARCKSL1,PEF1,PHC2,PTP4A2,RBBP4,RNF19B,S100PBP,SPOCD1,SYNC,TINAGL1,TMEM234,TMEM39B,TMEM54,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZNF362,ZSCAN20"
TCGA.AG.A01W.01A	1	31974754	31979523	7	0.2	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	1	32052242	32164045	61	0.3356	NEUTRAL	NA	4	"COL16A1,HCRTR1,PEF1,TINAGL1"
TCGA.AG.3583	1	32071673	249198691	59539	0.0025	NEUTRAL	NA	1581	Too-Many
TCGA.AG.4009.01A	1	32084807	32100795	10	0.0114	NEUTRAL	NA	2	"HCRTR1,PEF1"
TCGA.EI.7004	1	32085636	147825661	27393	0.1992	NEUTRAL	NA	671	Too-Many
TCGA.AA.A00N.01A	1	32089077	32098708	6	-0.0808	NEUTRAL	NA	2	"HCRTR1,PEF1"
TCGA.AG.3909.01A	1	32089077	32137170	27	0.2226	NEUTRAL	NA	3	"COL16A1,HCRTR1,PEF1"
TCGA.AG.3611.01A	1	32089077	32265340	40	-0.1683	NEUTRAL	NA	5	"ADGRB2,COL16A1,HCRTR1,PEF1,SPOCD1"
TCGA.AA.A01Q.01A	1	32100795	32167672	16	0.2258	NEUTRAL	NA	2	"COL16A1,PEF1"
TCGA.AA.A00N.01A	1	32137170	32158626	21	0.0286	NEUTRAL	NA	1	COL16A1
TCGA.AG.A00C.01A	1	32162527	32257826	27	0.3276	NEUTRAL	NA	3	"ADGRB2,COL16A1,SPOCD1"
TCGA.AA.A010.01A	1	32165384	32200747	10	-0.3453	NEUTRAL	NA	2	"ADGRB2,COL16A1"
TCGA.AG.4009.01A	1	32193568	32670721	78	-0.067	NEUTRAL	NA	8	"ADGRB2,CCDC28B,KHDRBS1,KPNA6,PTP4A2,SPOCD1,TMEM39B,TXLNA"
TCGA.D5.6923	1	32241332	201332807	43750	0.0656	NEUTRAL	NA	1221	Too-Many
TCGA.AG.3906.01A	1	32256205	32279514	11	-0.3179	NEUTRAL	NA	1	SPOCD1
TCGA.AG.3909.01A	1	32256205	32627499	39	0.2286	NEUTRAL	NA	5	"KHDRBS1,KPNA6,PTP4A2,SPOCD1,TMEM39B"
TCGA.AA.A01Q.01A	1	32256205	32655614	54	0.2438	NEUTRAL	NA	6	"KHDRBS1,KPNA6,PTP4A2,SPOCD1,TMEM39B,TXLNA"
TCGA.AA.A010.01A	1	32257826	32384520	18	-0.496	NEUTRAL	NA	2	"PTP4A2,SPOCD1"
TCGA.AG.A00C.01A	1	32258232	32740873	83	0.0181	NEUTRAL	NA	13	"CCDC28B,DCDC2B,EIF3I,FAM167B,IQCC,KHDRBS1,KPNA6,LCK,PTP4A2,SPOCD1,TMEM234,TMEM39B,TXLNA"
TCGA.AG.3611.01A	1	32265615	32626161	31	0.1949	NEUTRAL	NA	5	"KHDRBS1,KPNA6,PTP4A2,SPOCD1,TMEM39B"
TCGA.AM.5820	1	32281773	33085243	74	-0.1223	NEUTRAL	NA	19	"BSDC1,CCDC28B,DCDC2B,EIF3I,FAM167B,FAM229A,HDAC1,IQCC,KHDRBS1,KPNA6,LCK,MARCKSL1,PTP4A2,TMEM234,TMEM39B,TSSK3,TXLNA,ZBTB8A,ZBTB8B"
TCGA.AF.4110	1	32322732	144901892	26997	-0.2829	NEUTRAL	NA	637	Too-Many
TCGA.AA.A00N.01A	1	32374406	32505059	13	-0.1311	NEUTRAL	NA	2	"KHDRBS1,PTP4A2"
TCGA.AG.3906.01A	1	32374406	33295515	140	0.2122	NEUTRAL	NA	25	"BSDC1,CCDC28B,DCDC2B,EIF3I,FAM167B,FAM229A,HDAC1,IQCC,KHDRBS1,KIAA1522,KPNA6,LCK,MARCKSL1,PTP4A2,RBBP4,S100PBP,SYNC,TMEM234,TMEM39B,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.AA.A010.01A	1	32479548	32508078	9	0.0908	NEUTRAL	NA	1	KHDRBS1
TCGA.CK.5914.01A	1	32498750	32628784	25	-0.1	NEUTRAL	NA	3	"KHDRBS1,KPNA6,TMEM39B"
TCGA.AA.A017.01A	1	32508078	36933146	510	-0.5074	NEUTRAL	NA	71	"A3GALT2,ADPRHL2,AGO1,AGO3,AGO4,AK2,AZIN2,BSDC1,C1orf216,C1orf94,CCDC28B,CLSPN,COL8A2,CSF3R,CSMD2,DCDC2B,DLGAP3,EIF3I,EVA1B,FAM167B,FAM229A,FNDC5,GJA4,GJB3,GJB4,GJB5,HDAC1,HMGB4,HPCA,IQCC,KHDRBS1,KIAA0319L,KIAA1522,KPNA6,LCK,LSM10,MAP7D1,MARCKSL1,MRPS15,NCDN,OSCP1,PHC2,PSMB2,RBBP4,RNF19B,S100PBP,SFPQ,SH3D21,SMIM12,STK40,SYNC,TEKT2,TFAP2E,THRAP3,TMEM234,TMEM39B,TMEM54,TRAPPC3,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZNF362,ZSCAN20"
TCGA.AG.3887	1	32554584	249198691	60902	-0.0158	NEUTRAL	NA	1574	Too-Many
TCGA.A6.6648	1	32602530	238389148	57422	0	NEUTRAL	NA	1489	Too-Many
TCGA.AA.A00N.01A	1	32620142	32628784	9	-0.0903	NEUTRAL	NA	1	KPNA6
TCGA.AA.A010.01A	1	32620142	32757698	62	0.3326	NEUTRAL	NA	9	"CCDC28B,DCDC2B,EIF3I,FAM167B,IQCC,KPNA6,LCK,TMEM234,TXLNA"
TCGA.AG.3611.01A	1	32627499	32660475	17	-0.0641	NEUTRAL	NA	2	"KPNA6,TXLNA"
TCGA.AG.3909.01A	1	32627911	32713921	44	-0.2316	NEUTRAL	NA	8	"CCDC28B,DCDC2B,EIF3I,FAM167B,IQCC,KPNA6,TMEM234,TXLNA"
TCGA.AA.A00L.01A	1	32655614	32713921	26	0.0743	NEUTRAL	NA	7	"CCDC28B,DCDC2B,EIF3I,FAM167B,IQCC,TMEM234,TXLNA"
TCGA.AA.A01Q.01A	1	32657862	32696487	26	-0.2696	NEUTRAL	NA	6	"CCDC28B,DCDC2B,EIF3I,IQCC,TMEM234,TXLNA"
TCGA.AA.A00N.01A	1	32660475	32687818	23	0.0129	NEUTRAL	NA	5	"CCDC28B,DCDC2B,IQCC,TMEM234,TXLNA"
TCGA.AG.3611.01A	1	32667485	32739912	21	0.2795	NEUTRAL	NA	7	"CCDC28B,DCDC2B,EIF3I,FAM167B,IQCC,LCK,TMEM234"
TCGA.AA.A01Q.01A	1	32713921	32782229	12	0.2415	NEUTRAL	NA	3	"FAM167B,HDAC1,LCK"
TCGA.AG.4009.01A	1	32713921	32790017	11	-0.1011	NEUTRAL	NA	3	"FAM167B,HDAC1,LCK"
TCGA.AA.A00L.01A	1	32739912	35562891	244	-0.3922	NEUTRAL	NA	37	"A3GALT2,AK2,AZIN2,BSDC1,C1orf94,CSMD2,DLGAP3,FAM229A,FNDC5,GJA4,GJB3,GJB4,GJB5,HDAC1,HMGB4,HPCA,KIAA1522,LCK,MARCKSL1,PHC2,RBBP4,RNF19B,S100PBP,SMIM12,SYNC,TMEM54,TRIM62,TSSK3,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZMYM1,ZMYM6,ZMYM6NB,ZNF362,ZSCAN20"
TCGA.AG.3611.01A	1	32740282	32745142	5	-0.3579	NEUTRAL	NA	1	LCK
TCGA.AG.3611.01A	1	32751085	33625282	103	0.1862	NEUTRAL	NA	21	"AK2,AZIN2,BSDC1,FAM229A,FNDC5,HDAC1,HPCA,KIAA1522,LCK,MARCKSL1,RBBP4,RNF19B,S100PBP,SYNC,TMEM54,TRIM62,TSSK3,YARS,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.CI.6623	1	32831542	145009381	26946	-0.4237	NEUTRAL	NA	621	Too-Many
TCGA.D5.6932	1	32831542	249198691	60979	-0.1994	NEUTRAL	NA	1560	Too-Many
TCGA.AA.A01Q.01A	1	32832138	33233416	35	0.223	NEUTRAL	NA	7	"BSDC1,KIAA1522,RBBP4,SYNC,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.AF.3914.01A	1	32833903	33149850	30	0.061	NEUTRAL	NA	6	"BSDC1,RBBP4,SYNC,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.AA.A00N.01A	1	32841863	32859944	8	0.363	NEUTRAL	NA	1	BSDC1
TCGA.AG.A00C.01A	1	32841863	33065661	12	-0.0918	NEUTRAL	NA	3	"BSDC1,ZBTB8A,ZBTB8B"
TCGA.AG.3909.01A	1	32841863	33099570	17	-0.1599	NEUTRAL	NA	4	"BSDC1,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.AA.A010.01A	1	32841863	33138003	28	0.3444	NEUTRAL	NA	5	"BSDC1,RBBP4,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.AG.4009.01A	1	32841863	33149850	26	0.1153	NEUTRAL	NA	6	"BSDC1,RBBP4,SYNC,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.AG.A00C.01A	1	33087410	33567367	72	0.2789	NEUTRAL	NA	12	"AK2,AZIN2,FNDC5,HPCA,KIAA1522,RBBP4,RNF19B,S100PBP,SYNC,TMEM54,YARS,ZBTB8OS"
TCGA.AM.5820	1	33087436	35354275	762	0.2207	NEUTRAL	NA	26	"A3GALT2,AK2,AZIN2,C1orf94,CSMD2,DLGAP3,FNDC5,GJA4,GJB3,GJB4,GJB5,HMGB4,HPCA,KIAA1522,PHC2,RBBP4,RNF19B,S100PBP,SMIM12,SYNC,TMEM54,TRIM62,YARS,ZBTB8OS,ZNF362,ZSCAN20"
TCGA.AG.A01W.01A	1	33132942	33139322	5	0.2952	NEUTRAL	NA	1	RBBP4
TCGA.AG.3909.01A	1	33133784	33160808	9	-0.1927	NEUTRAL	NA	2	"RBBP4,SYNC"
TCGA.AG.4009.01A	1	33160416	33252511	13	-0.269	NEUTRAL	NA	3	"KIAA1522,SYNC,YARS"
TCGA.AF.3914.01A	1	33160416	33282741	18	-0.4566	NEUTRAL	NA	3	"KIAA1522,SYNC,YARS"
TCGA.AG.A01W.01A	1	33174954	35093260	147	-0.4169	NEUTRAL	NA	17	"A3GALT2,AK2,AZIN2,C1orf94,CSMD2,FNDC5,HMGB4,HPCA,KIAA1522,PHC2,RNF19B,S100PBP,TMEM54,TRIM62,YARS,ZNF362,ZSCAN20"
TCGA.AA.3870	1	33233222	35397151	750	0.0428	NEUTRAL	NA	23	"A3GALT2,AK2,AZIN2,C1orf94,CSMD2,DLGAP3,FNDC5,GJA4,GJB3,GJB4,GJB5,HMGB4,HPCA,KIAA1522,PHC2,RNF19B,S100PBP,SMIM12,TMEM54,TRIM62,YARS,ZNF362,ZSCAN20"
TCGA.AA.A01Q.01A	1	33235242	33429605	39	-0.1907	NEUTRAL	NA	7	"FNDC5,HPCA,KIAA1522,RNF19B,S100PBP,TMEM54,YARS"
TCGA.AG.3909.01A	1	33282741	33992731	80	-0.2606	NEUTRAL	NA	14	"A3GALT2,AK2,AZIN2,CSMD2,FNDC5,HPCA,PHC2,RNF19B,S100PBP,TMEM54,TRIM62,YARS,ZNF362,ZSCAN20"
TCGA.AG.4009.01A	1	33291654	33333302	9	-0.3468	NEUTRAL	NA	2	"FNDC5,S100PBP"
TCGA.AF.3914.01A	1	33291654	33333769	10	0.3569	NEUTRAL	NA	2	"FNDC5,S100PBP"
TCGA.AF.3914.01A	1	33361454	36565604	334	-0.0532	NEUTRAL	NA	35	"A3GALT2,ADPRHL2,AGO1,AGO3,AGO4,AK2,AZIN2,C1orf216,C1orf94,CLSPN,COL8A2,CSMD2,DLGAP3,GJA4,GJB3,GJB4,GJB5,HMGB4,KIAA0319L,NCDN,PHC2,PSMB2,RNF19B,SFPQ,SMIM12,TEKT2,TFAP2E,TMEM54,TRIM62,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZNF362,ZSCAN20"
TCGA.AG.4009.01A	1	33402355	33415123	8	-0.278	NEUTRAL	NA	1	RNF19B
TCGA.AG.3906.01A	1	33415123	33625282	19	-0.1466	NEUTRAL	NA	4	"AK2,AZIN2,RNF19B,TRIM62"
TCGA.AA.A00N.01A	1	33429605	33992731	62	-0.0334	NEUTRAL	NA	9	"A3GALT2,AK2,AZIN2,CSMD2,PHC2,RNF19B,TRIM62,ZNF362,ZSCAN20"
TCGA.AA.3692	1	33437041	249198691	61099	0.0292	NEUTRAL	NA	1547	Too-Many
TCGA.AG.4009.01A	1	33476334	33631023	19	0.1435	NEUTRAL	NA	3	"AK2,AZIN2,TRIM62"
TCGA.CK.5914.01A	1	33476334	33836579	46	-0.3638	NEUTRAL	NA	6	"A3GALT2,AK2,AZIN2,PHC2,TRIM62,ZNF362"
TCGA.AA.A01Q.01A	1	33476334	34684223	122	0.2277	NEUTRAL	NA	10	"A3GALT2,AK2,AZIN2,C1orf94,CSMD2,HMGB4,PHC2,TRIM62,ZNF362,ZSCAN20"
TCGA.AG.A023.01A	1	33476334	43221187	920	-0.1112	NEUTRAL	NA	113	Too-Many
TCGA.AG.A00C.01A	1	33583451	33625282	5	-0.446	NEUTRAL	NA	2	"AZIN2,TRIM62"
TCGA.AG.3611.01A	1	33631023	33840920	23	-0.3155	NEUTRAL	NA	4	"A3GALT2,PHC2,TRIM62,ZNF362"
TCGA.AG.A00C.01A	1	33631023	33990455	35	0.1828	NEUTRAL	NA	6	"A3GALT2,CSMD2,PHC2,TRIM62,ZNF362,ZSCAN20"
TCGA.CI.6622	1	33638735	209082261	46355	0.001	NEUTRAL	NA	1288	Too-Many
TCGA.AF.3913	1	33638735	249198691	60804	0	NEUTRAL	NA	1545	Too-Many
TCGA.D5.6924	1	33643360	41343060	2091	0.095	NEUTRAL	NA	94	"A3GALT2,ADPRHL2,AGO1,AGO3,AGO4,AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,C1orf216,C1orf94,CAP1,CDCA8,CITED4,CLSPN,COL8A2,COL9A2,CSF3R,CSMD2,DLGAP3,DNALI1,EPHA10,EVA1B,EXO5,FHL3,GJA4,GJA9,GJB3,GJB4,GJB5,GNL2,GRIK3,HEYL,HMGB4,HPCAL4,INPP5B,KCNQ4,KIAA0319L,KIAA0754,LSM10,MACF1,MANEAL,MAP7D1,MEAF6,MFSD2A,MRPS15,MTF1,MYCBP,MYCL,NCDN,NDUFS5,NFYC,NT5C1A,OSCP1,OXCT2,PABPC4,PHC2,POU3F1,PPIE,PPT1,PSMB2,RHBDL2,RIMS3,RLF,RRAGC,RSPO1,SF3A3,SFPQ,SH3D21,SMAP2,SMIM12,SNIP1,STK40,TEKT2,TFAP2E,THRAP3,TMCO2,TRAPPC3,TRIM62,TRIT1,UTP11L,YRDC,ZC3H12A,ZFP69,ZFP69B,ZMPSTE24,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZNF362,ZNF684,ZSCAN20"
TCGA.AG.4015	1	33751102	34046645	100	-0.0163	NEUTRAL	NA	5	"A3GALT2,CSMD2,PHC2,ZNF362,ZSCAN20"
TCGA.AA.A010.01A	1	33834093	33959780	13	-0.2651	NEUTRAL	NA	2	"PHC2,ZSCAN20"
TCGA.AG.4009.01A	1	33835974	34002557	20	-0.1425	NEUTRAL	NA	3	"CSMD2,PHC2,ZSCAN20"
TCGA.AG.3906.01A	1	33840920	35972185	171	-0.108	NEUTRAL	NA	17	"C1orf94,CSMD2,DLGAP3,GJA4,GJB3,GJB4,GJB5,HMGB4,KIAA0319L,PHC2,SFPQ,SMIM12,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZSCAN20"
TCGA.AG.3611.01A	1	33944848	36904338	321	0.0611	NEUTRAL	NA	35	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,C1orf94,CLSPN,COL8A2,CSMD2,DLGAP3,EVA1B,GJA4,GJB3,GJB4,GJB5,HMGB4,KIAA0319L,LSM10,MAP7D1,NCDN,OSCP1,PSMB2,SFPQ,SH3D21,SMIM12,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZSCAN20"
TCGA.AG.A00C.01A	1	33992731	34498155	63	-0.2936	NEUTRAL	NA	2	"CSMD2,HMGB4"
TCGA.AG.4009.01A	1	34002985	34498155	58	0.2433	NEUTRAL	NA	2	"CSMD2,HMGB4"
TCGA.AG.4015	1	34048267	36835803	749	-0.4058	NEUTRAL	NA	32	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,C1orf94,CLSPN,COL8A2,CSMD2,DLGAP3,EVA1B,GJA4,GJB3,GJB4,GJB5,HMGB4,KIAA0319L,MAP7D1,NCDN,PSMB2,SFPQ,SH3D21,SMIM12,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.AA.A02F.01A	1	34189750	38442494	375	0.0186	NEUTRAL	NA	52	"ADPRHL2,AGO1,AGO3,AGO4,C1orf109,C1orf122,C1orf216,C1orf94,CDCA8,CLSPN,COL8A2,CSF3R,CSMD2,DLGAP3,DNALI1,EPHA10,EVA1B,GJA4,GJB3,GJB4,GJB5,GNL2,GRIK3,HMGB4,INPP5B,KIAA0319L,LSM10,MANEAL,MAP7D1,MEAF6,MRPS15,MTF1,NCDN,OSCP1,PSMB2,RSPO1,SF3A3,SFPQ,SH3D21,SMIM12,SNIP1,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,YRDC,ZC3H12A,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.DC.6683	1	34225783	246814805	60148	0	NEUTRAL	NA	1484	Too-Many
TCGA.CM.4752	1	34301428	37454783	853	0.178	NEUTRAL	NA	37	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,C1orf94,CLSPN,COL8A2,CSF3R,CSMD2,DLGAP3,EVA1B,GJA4,GJB3,GJB4,GJB5,GRIK3,HMGB4,KIAA0319L,LSM10,MAP7D1,MRPS15,NCDN,OSCP1,PSMB2,SFPQ,SH3D21,SMIM12,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.AA.3952	1	34331389	65997739	9607	0.0391	NEUTRAL	NA	290	Too-Many
TCGA.AG.A01Y	1	34386709	150279332	26974	0.0015	NEUTRAL	NA	659	Too-Many
TCGA.CM.5349	1	34546013	164612149	31466	0.0052	NEUTRAL	NA	999	Too-Many
TCGA.AG.3901	1	34551602	249198691	60477	0.0272	NEUTRAL	NA	1539	Too-Many
TCGA.AG.A00C.01A	1	34554527	35656901	48	0.241	NEUTRAL	NA	12	"C1orf94,CSMD2,DLGAP3,GJA4,GJB3,GJB4,GJB5,SFPQ,SMIM12,ZMYM1,ZMYM6,ZMYM6NB"
TCGA.AG.4009.01A	1	34554527	36893924	250	-0.1455	NEUTRAL	NA	33	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,C1orf94,CLSPN,COL8A2,CSMD2,DLGAP3,EVA1B,GJA4,GJB3,GJB4,GJB5,KIAA0319L,LSM10,MAP7D1,NCDN,OSCP1,PSMB2,SFPQ,SH3D21,SMIM12,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.AA.A010.01A	1	34631281	35369901	24	-0.1604	NEUTRAL	NA	8	"C1orf94,CSMD2,DLGAP3,GJA4,GJB3,GJB4,GJB5,SMIM12"
TCGA.AG.3731	1	34691738	35513350	271	0.2155	NEUTRAL	NA	8	"DLGAP3,GJA4,GJB3,GJB4,GJB5,SMIM12,ZMYM6,ZMYM6NB"
TCGA.A6.2677	1	34836587	249198691	55285	0.0164	NEUTRAL	NA	1537	Too-Many
TCGA.AA.3518	1	34859868	202861341	43577	-0.0041	NEUTRAL	NA	1202	Too-Many
TCGA.AG.A01W.01A	1	35105190	35225263	11	0.3167	NEUTRAL	NA	1	GJB5
TCGA.AG.A008.01A	1	35222965	37285290	273	0.1533	NEUTRAL	NA	34	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,CSF3R,DLGAP3,EVA1B,GJA4,GJB3,GJB4,GJB5,GRIK3,KIAA0319L,LSM10,MAP7D1,MRPS15,NCDN,OSCP1,PSMB2,SFPQ,SH3D21,SMIM12,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.AG.A01W.01A	1	35230376	35429498	26	-0.3218	NEUTRAL	NA	4	"DLGAP3,GJA4,GJB3,SMIM12"
TCGA.AA.A00F.01A	1	35250347	35734567	34	-0.0293	NEUTRAL	NA	9	"DLGAP3,GJA4,GJB3,SFPQ,SMIM12,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.DM.A285	1	35253375	37197719	341	-0.2089	NEUTRAL	NA	30	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,CSF3R,DLGAP3,EVA1B,GJA4,KIAA0319L,LSM10,MAP7D1,MRPS15,NCDN,OSCP1,PSMB2,SFPQ,SH3D21,SMIM12,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.AZ.4684.01A	1	35320670	35734567	44	0.2572	NEUTRAL	NA	7	"DLGAP3,SFPQ,SMIM12,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.AA.A01Q.01A	1	35351031	35457788	7	-0.1018	NEUTRAL	NA	3	"DLGAP3,ZMYM6,ZMYM6NB"
TCGA.AM.5820	1	35354821	35678748	44	-0.1767	NEUTRAL	NA	5	"DLGAP3,SFPQ,ZMYM1,ZMYM6,ZMYM6NB"
TCGA.CK.5914.01A	1	35469486	35485930	11	0.0864	NEUTRAL	NA	1	ZMYM6
TCGA.AA.A01Q.01A	1	35469486	35562891	13	0.2348	NEUTRAL	NA	2	"ZMYM1,ZMYM6"
TCGA.AA.A010.01A	1	35477439	35485930	5	-0.4669	NEUTRAL	NA	1	ZMYM6
TCGA.AG.3731	1	35526101	249198691	60360	-0.1321	NEUTRAL	NA	1529	Too-Many
TCGA.AA.A01Q.01A	1	35578568	35656901	7	-0.2987	NEUTRAL	NA	2	"SFPQ,ZMYM1"
TCGA.AG.3605.01A	1	35578568	247109015	255	-0.3966	NEUTRAL	NA	1476	Too-Many
TCGA.AG.A01W.01A	1	35599369	35624226	7	-0.3155	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	35625185	35637649	12	0.0799	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	35643165	35673056	8	-0.2636	NEUTRAL	NA	1	SFPQ
TCGA.AA.A00L.01A	1	35656901	40766817	567	-0.3426	NEUTRAL	NA	68	"ADPRHL2,AGO1,AGO3,AGO4,AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,C1orf216,CAP1,CDCA8,CLSPN,COL8A2,COL9A2,CSF3R,DNALI1,EPHA10,EVA1B,FHL3,GJA9,GNL2,GRIK3,HEYL,HPCAL4,INPP5B,KIAA0319L,KIAA0754,LSM10,MACF1,MANEAL,MAP7D1,MEAF6,MFSD2A,MRPS15,MTF1,MYCBP,MYCL,NCDN,NDUFS5,NT5C1A,OSCP1,OXCT2,PABPC4,POU3F1,PPIE,PPT1,PSMB2,RHBDL2,RLF,RRAGC,RSPO1,SF3A3,SFPQ,SH3D21,SNIP1,STK40,TEKT2,TFAP2E,THRAP3,TMCO2,TRAPPC3,TRIT1,UTP11L,YRDC,ZC3H12A,ZMPSTE24,ZMYM4"
TCGA.AG.3909.01A	1	35657782	35885087	29	0.0395	NEUTRAL	NA	2	"SFPQ,ZMYM4"
TCGA.A6.3808.01A	1	35657782	36438945	132	0.1694	NEUTRAL	NA	11	"AGO1,AGO3,AGO4,C1orf216,CLSPN,KIAA0319L,NCDN,PSMB2,SFPQ,TFAP2E,ZMYM4"
TCGA.AA.A01Q.01A	1	35657782	36521201	142	0.2221	NEUTRAL	NA	11	"AGO1,AGO3,AGO4,C1orf216,CLSPN,KIAA0319L,NCDN,PSMB2,SFPQ,TFAP2E,ZMYM4"
TCGA.AG.A01W.01A	1	35694155	35813067	19	-0.3288	NEUTRAL	NA	1	ZMYM4
TCGA.AG.A00C.01A	1	35790902	35972185	47	-0.1793	NEUTRAL	NA	2	"KIAA0319L,ZMYM4"
TCGA.AA.A00F.01A	1	35790902	36225966	83	-0.2906	NEUTRAL	NA	7	"C1orf216,CLSPN,KIAA0319L,NCDN,PSMB2,TFAP2E,ZMYM4"
TCGA.CK.5914.01A	1	35824565	35885087	27	-0.0561	NEUTRAL	NA	1	ZMYM4
TCGA.AG.A01W.01A	1	35832533	35874452	6	-0.2352	NEUTRAL	NA	1	ZMYM4
TCGA.D5.6536	1	35843028	37041356	200	0.3576	NEUTRAL	NA	23	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,CSF3R,EVA1B,KIAA0319L,LSM10,MAP7D1,MRPS15,NCDN,OSCP1,PSMB2,SH3D21,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,ZMYM4"
TCGA.AM.5820	1	35862655	249198691	60251	0.0157	NEUTRAL	NA	1527	Too-Many
TCGA.AA.3930.01A	1	35884006	36101864	40	-0.2597	NEUTRAL	NA	5	"KIAA0319L,NCDN,PSMB2,TFAP2E,ZMYM4"
TCGA.AG.3909.01A	1	35900444	35972185	19	0.2932	NEUTRAL	NA	1	KIAA0319L
TCGA.CM.6677	1	35929007	55629966	4914	-0.2167	NEUTRAL	NA	240	Too-Many
TCGA.D5.6922	1	35929007	208130904	45065	0.2448	NEUTRAL	NA	1268	Too-Many
TCGA.CK.5914.01A	1	36019919	36915831	172	-0.2463	NEUTRAL	NA	20	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,EVA1B,KIAA0319L,LSM10,MAP7D1,NCDN,OSCP1,PSMB2,SH3D21,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3"
TCGA.AG.A00C.01A	1	36019919	36934710	170	0.1834	NEUTRAL	NA	22	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,CSF3R,EVA1B,KIAA0319L,LSM10,MAP7D1,MRPS15,NCDN,OSCP1,PSMB2,SH3D21,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3"
TCGA.AG.3909.01A	1	36040479	36106888	11	0.3766	NEUTRAL	NA	2	"PSMB2,TFAP2E"
TCGA.AG.3906.01A	1	36059975	36565604	96	0.0018	NEUTRAL	NA	10	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,PSMB2,TEKT2,TFAP2E"
TCGA.AG.A01W.01A	1	36061011	36079313	10	0.0068	NEUTRAL	NA	1	PSMB2
TCGA.AA.A010.01A	1	36068830	36235359	32	0.066	NEUTRAL	NA	3	"C1orf216,CLSPN,PSMB2"
TCGA.AG.A01W.01A	1	36088336	36145097	13	-0.3313	NEUTRAL	NA	1	PSMB2
TCGA.AA.3930.01A	1	36106888	44584519	1032	0.1435	NEUTRAL	NA	117	Too-Many
TCGA.AG.A01W.01A	1	36169535	36596411	69	-0.2201	NEUTRAL	NA	8	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,TEKT2"
TCGA.AG.3909.01A	1	36181182	36904338	141	-0.271	NEUTRAL	NA	16	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,EVA1B,LSM10,MAP7D1,OSCP1,SH3D21,STK40,TEKT2,THRAP3,TRAPPC3"
TCGA.AA.A00F.01A	1	36226650	36230792	6	0.3134	NEUTRAL	NA	1	CLSPN
TCGA.AA.A00D.01A	1	36235359	36301395	11	0.0145	NEUTRAL	NA	2	"AGO4,CLSPN"
TCGA.AA.A00F.01A	1	36235359	36602756	63	-0.1872	NEUTRAL	NA	8	"ADPRHL2,AGO1,AGO3,AGO4,CLSPN,COL8A2,TEKT2,TRAPPC3"
TCGA.AA.A00N.01A	1	36297366	36432509	28	-0.1588	NEUTRAL	NA	3	"AGO1,AGO3,AGO4"
TCGA.AA.A010.01A	1	36306774	36479479	32	-0.0627	NEUTRAL	NA	3	"AGO1,AGO3,AGO4"
TCGA.AA.A00D.01A	1	36306774	38464606	223	-0.3277	NEUTRAL	NA	33	"ADPRHL2,AGO1,AGO3,AGO4,C1orf109,C1orf122,CDCA8,COL8A2,CSF3R,DNALI1,EPHA10,EVA1B,FHL3,GNL2,GRIK3,INPP5B,LSM10,MANEAL,MAP7D1,MEAF6,MRPS15,MTF1,OSCP1,RSPO1,SF3A3,SH3D21,SNIP1,STK40,TEKT2,THRAP3,TRAPPC3,YRDC,ZC3H12A"
TCGA.AA.3870	1	36315930	42835785	1747	0.0894	NEUTRAL	NA	78	"ADPRHL2,AGO1,AGO3,AGO4,AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,CAP1,CDCA8,CITED4,COL8A2,COL9A2,CSF3R,CTPS1,DNALI1,EDN2,EPHA10,EVA1B,EXO5,FHL3,FOXJ3,FOXO6,GJA9,GNL2,GRIK3,GUCA2A,GUCA2B,HEYL,HIVEP3,HPCAL4,INPP5B,KCNQ4,KIAA0754,LSM10,MACF1,MANEAL,MAP7D1,MEAF6,MFSD2A,MRPS15,MTF1,MYCBP,MYCL,NDUFS5,NFYC,NT5C1A,OSCP1,OXCT2,PABPC4,POU3F1,PPIE,PPT1,RHBDL2,RIMS3,RLF,RRAGC,RSPO1,SCMH1,SF3A3,SH3D21,SLFNL1,SMAP2,SNIP1,STK40,TEKT2,THRAP3,TMCO2,TRAPPC3,TRIT1,UTP11L,YRDC,ZC3H12A,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.DM.A1DB	1	36395114	51393644	3795	0.006	NEUTRAL	NA	177	Too-Many
TCGA.5M.AAT5	1	36497348	63467307	8125	0.0384	NEUTRAL	NA	255	Too-Many
TCGA.AA.A010.01A	1	36520510	36565604	18	-0.2445	NEUTRAL	NA	4	"ADPRHL2,AGO3,COL8A2,TEKT2"
TCGA.AA.A01Q.01A	1	36550482	39352129	217	-0.1919	NEUTRAL	NA	36	"ADPRHL2,C1orf109,C1orf122,CDCA8,COL8A2,CSF3R,DNALI1,EPHA10,EVA1B,FHL3,GJA9,GNL2,GRIK3,INPP5B,LSM10,MANEAL,MAP7D1,MEAF6,MRPS15,MTF1,MYCBP,OSCP1,POU3F1,RHBDL2,RRAGC,RSPO1,SF3A3,SH3D21,SNIP1,STK40,TEKT2,THRAP3,TRAPPC3,UTP11L,YRDC,ZC3H12A"
TCGA.AA.A00F.01A	1	36614879	40922966	428	-0.1372	NEUTRAL	NA	56	"AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,CAP1,CDCA8,COL9A2,CSF3R,DNALI1,EPHA10,EVA1B,FHL3,GJA9,GNL2,GRIK3,HEYL,HPCAL4,INPP5B,KIAA0754,LSM10,MACF1,MANEAL,MAP7D1,MEAF6,MFSD2A,MRPS15,MTF1,MYCBP,MYCL,NDUFS5,NT5C1A,OSCP1,OXCT2,PABPC4,POU3F1,PPIE,PPT1,RHBDL2,RLF,RRAGC,RSPO1,SF3A3,SH3D21,SMAP2,SNIP1,STK40,THRAP3,TMCO2,TRAPPC3,TRIT1,UTP11L,YRDC,ZC3H12A,ZFP69B,ZMPSTE24"
TCGA.AG.3906.01A	1	36748168	36927629	43	0.2056	NEUTRAL	NA	7	"EVA1B,LSM10,MRPS15,OSCP1,SH3D21,STK40,THRAP3"
TCGA.AF.3914.01A	1	36748168	38200882	140	0.03	NEUTRAL	NA	18	"C1orf109,CDCA8,CSF3R,DNALI1,EPHA10,EVA1B,GNL2,GRIK3,LSM10,MEAF6,MRPS15,OSCP1,RSPO1,SH3D21,SNIP1,STK40,THRAP3,ZC3H12A"
TCGA.AG.3891.01A	1	36767137	39784086	248	0.2298	NEUTRAL	NA	34	"AKIRIN1,C1orf109,C1orf122,CDCA8,CSF3R,DNALI1,EPHA10,EVA1B,FHL3,GJA9,GNL2,GRIK3,INPP5B,LSM10,MACF1,MANEAL,MEAF6,MRPS15,MTF1,MYCBP,NDUFS5,OSCP1,POU3F1,RHBDL2,RRAGC,RSPO1,SF3A3,SH3D21,SNIP1,STK40,THRAP3,UTP11L,YRDC,ZC3H12A"
TCGA.AA.A00N.01A	1	36786461	36897981	22	-0.0782	NEUTRAL	NA	5	"EVA1B,LSM10,OSCP1,SH3D21,STK40"
TCGA.AA.A010.01A	1	36786461	36909530	24	0.1417	NEUTRAL	NA	5	"EVA1B,LSM10,OSCP1,SH3D21,STK40"
TCGA.AG.4015	1	36836317	45740468	2422	0.0372	NEUTRAL	NA	120	Too-Many
TCGA.A6.A56B	1	36874241	56813176	5338	0.3063	NEUTRAL	NA	221	Too-Many
TCGA.AA.A01F.01A	1	36923457	41618211	457	-0.3015	NEUTRAL	NA	58	"AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,CAP1,CDCA8,CITED4,COL9A2,CSF3R,CTPS1,DNALI1,EPHA10,EXO5,FHL3,GJA9,GNL2,GRIK3,HEYL,HPCAL4,INPP5B,KCNQ4,KIAA0754,MACF1,MANEAL,MEAF6,MFSD2A,MRPS15,MTF1,MYCBP,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,PABPC4,POU3F1,PPIE,PPT1,RHBDL2,RIMS3,RLF,RRAGC,RSPO1,SCMH1,SF3A3,SLFNL1,SMAP2,SNIP1,TMCO2,TRIT1,UTP11L,YRDC,ZC3H12A,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.AG.3909.01A	1	36929342	37291153	20	0.0282	NEUTRAL	NA	3	"CSF3R,GRIK3,MRPS15"
TCGA.AG.3906.01A	1	36929342	38186066	90	-0.0645	NEUTRAL	NA	12	"C1orf109,CDCA8,CSF3R,DNALI1,EPHA10,GNL2,GRIK3,MEAF6,MRPS15,RSPO1,SNIP1,ZC3H12A"
TCGA.CK.5914.01A	1	36929708	36934710	6	-0.2221	NEUTRAL	NA	2	"CSF3R,MRPS15"
TCGA.AA.A017.01A	1	36934710	144903050	5141	0.0248	NEUTRAL	NA	566	Too-Many
TCGA.AG.A00C.01A	1	36935246	37356494	22	-0.2129	NEUTRAL	NA	2	"CSF3R,GRIK3"
TCGA.AG.3611.01A	1	36938098	37291153	10	0.0573	NEUTRAL	NA	2	"CSF3R,GRIK3"
TCGA.D5.6536	1	37046144	39216645	686	-0.0664	NEUTRAL	NA	19	"C1orf109,C1orf122,CDCA8,DNALI1,EPHA10,FHL3,GNL2,GRIK3,INPP5B,MANEAL,MEAF6,MTF1,POU3F1,RSPO1,SF3A3,SNIP1,UTP11L,YRDC,ZC3H12A"
TCGA.F4.6806	1	37075492	249198691	59811	0.0022	NEUTRAL	NA	1504	Too-Many
TCGA.DY.A0XA	1	37126511	145434930	25866	-0.2632	NEUTRAL	NA	569	Too-Many
TCGA.DM.A285	1	37203701	40346128	868	0.1268	NEUTRAL	NA	36	"AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,CDCA8,DNALI1,EPHA10,FHL3,GJA9,GNL2,GRIK3,HEYL,HPCAL4,INPP5B,KIAA0754,MACF1,MANEAL,MEAF6,MTF1,MYCBP,NDUFS5,NT5C1A,OXCT2,PABPC4,POU3F1,PPIE,RHBDL2,RRAGC,RSPO1,SF3A3,SNIP1,TRIT1,UTP11L,YRDC,ZC3H12A"
TCGA.AG.A008.01A	1	37291153	37346184	9	-0.263	NEUTRAL	NA	1	GRIK3
TCGA.AG.3611.01A	1	37307320	37941131	11	-0.3077	NEUTRAL	NA	2	"GRIK3,ZC3H12A"
TCGA.AG.A008.01A	1	37356494	41475775	448	0.1782	NEUTRAL	NA	54	"AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,CAP1,CDCA8,CITED4,COL9A2,CTPS1,DNALI1,EPHA10,EXO5,FHL3,GJA9,GNL2,GRIK3,HEYL,HPCAL4,INPP5B,KCNQ4,KIAA0754,MACF1,MANEAL,MEAF6,MFSD2A,MTF1,MYCBP,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,PABPC4,POU3F1,PPIE,PPT1,RHBDL2,RIMS3,RLF,RRAGC,RSPO1,SF3A3,SMAP2,SNIP1,TMCO2,TRIT1,UTP11L,YRDC,ZC3H12A,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.CM.4752	1	37456219	37638668	67	-0.3627	NEUTRAL	NA	1	GRIK3
TCGA.CK.5914.01A	1	37499557	38478420	131	-0.3178	NEUTRAL	NA	18	"C1orf109,C1orf122,CDCA8,DNALI1,EPHA10,FHL3,GNL2,GRIK3,INPP5B,MANEAL,MEAF6,MTF1,RSPO1,SF3A3,SNIP1,UTP11L,YRDC,ZC3H12A"
TCGA.AA.3544	1	37622069	42465727	1320	0.0334	NEUTRAL	NA	58	"AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,CAP1,CDCA8,CITED4,COL9A2,CTPS1,DNALI1,EDN2,EPHA10,EXO5,FHL3,FOXO6,GJA9,GNL2,HEYL,HIVEP3,HPCAL4,INPP5B,KCNQ4,KIAA0754,MACF1,MANEAL,MEAF6,MFSD2A,MTF1,MYCBP,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,PABPC4,POU3F1,PPIE,PPT1,RHBDL2,RIMS3,RLF,RRAGC,RSPO1,SCMH1,SF3A3,SLFNL1,SMAP2,SNIP1,TMCO2,TRIT1,UTP11L,YRDC,ZC3H12A,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.CM.4752	1	37643016	38385745	182	0.1956	NEUTRAL	NA	14	"C1orf109,C1orf122,CDCA8,DNALI1,EPHA10,GNL2,INPP5B,MANEAL,MEAF6,MTF1,RSPO1,SNIP1,YRDC,ZC3H12A"
TCGA.AA.3972	1	37727414	249198691	59790	0.0676	NEUTRAL	NA	1503	Too-Many
TCGA.CM.4747	1	37753526	112739570	23145	-0.0004	NEUTRAL	NA	490	Too-Many
TCGA.AG.3611.01A	1	37945841	38305555	67	0.0735	NEUTRAL	NA	13	"C1orf109,C1orf122,CDCA8,DNALI1,EPHA10,GNL2,MANEAL,MEAF6,MTF1,RSPO1,SNIP1,YRDC,ZC3H12A"
TCGA.AG.4009.01A	1	38003307	38197071	54	0.1728	NEUTRAL	NA	7	"C1orf109,CDCA8,DNALI1,EPHA10,GNL2,RSPO1,SNIP1"
TCGA.AG.A00C.01A	1	38019555	38027136	5	-0.224	NEUTRAL	NA	2	"DNALI1,SNIP1"
TCGA.AG.A00C.01A	1	38027655	38173925	36	0.3364	NEUTRAL	NA	5	"C1orf109,CDCA8,DNALI1,GNL2,RSPO1"
TCGA.AG.A01W.01A	1	38033946	38047249	7	0.2634	NEUTRAL	NA	1	GNL2
TCGA.AG.A01W.01A	1	38053394	42990484	479	-0.4092	NEUTRAL	NA	60	"AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,CAP1,CDCA8,CITED4,COL9A2,CTPS1,EDN2,EPHA10,EXO5,FHL3,FOXJ3,FOXO6,GJA9,GNL2,GUCA2A,GUCA2B,HEYL,HIVEP3,HPCAL4,INPP5B,KCNQ4,KIAA0754,MACF1,MANEAL,MFSD2A,MTF1,MYCBP,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,PABPC4,POU3F1,PPCS,PPIE,PPT1,RHBDL2,RIMKLA,RIMS3,RLF,RRAGC,RSPO1,SCMH1,SF3A3,SLFNL1,SMAP2,TMCO2,TRIT1,UTP11L,YRDC,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684"
TCGA.AG.A00C.01A	1	38183996	38219860	11	-0.2912	NEUTRAL	NA	1	EPHA10
TCGA.AG.3909.01A	1	38183996	38261358	14	0.3525	NEUTRAL	NA	2	"EPHA10,MANEAL"
TCGA.AG.4009.01A	1	38200882	38259828	4	-0.3764	NEUTRAL	NA	2	"EPHA10,MANEAL"
TCGA.AF.3914.01A	1	38219860	39696788	95	-0.3257	NEUTRAL	NA	17	"AKIRIN1,C1orf122,EPHA10,FHL3,GJA9,INPP5B,MACF1,MANEAL,MTF1,MYCBP,NDUFS5,POU3F1,RHBDL2,RRAGC,SF3A3,UTP11L,YRDC"
TCGA.AG.A00C.01A	1	38227118	39715671	91	0.3055	NEUTRAL	NA	17	"AKIRIN1,C1orf122,EPHA10,FHL3,GJA9,INPP5B,MACF1,MANEAL,MTF1,MYCBP,NDUFS5,POU3F1,RHBDL2,RRAGC,SF3A3,UTP11L,YRDC"
TCGA.AG.3909.01A	1	38280758	38305555	9	-0.0778	NEUTRAL	NA	1	MTF1
TCGA.AG.4009.01A	1	38283023	38343809	18	0.0176	NEUTRAL	NA	2	"INPP5B,MTF1"
TCGA.AG.3906.01A	1	38287761	39715671	82	0.3607	NEUTRAL	NA	13	"AKIRIN1,FHL3,GJA9,INPP5B,MACF1,MTF1,MYCBP,NDUFS5,POU3F1,RHBDL2,RRAGC,SF3A3,UTP11L"
TCGA.AA.A010.01A	1	38305555	38331386	5	0.2814	NEUTRAL	NA	2	"INPP5B,MTF1"
TCGA.AA.A010.01A	1	38332104	38356982	14	-0.4939	NEUTRAL	NA	1	INPP5B
TCGA.AG.3909.01A	1	38397200	38455489	20	0.0732	NEUTRAL	NA	2	"INPP5B,SF3A3"
TCGA.AG.4009.01A	1	38397200	38455489	20	0.1433	NEUTRAL	NA	2	"INPP5B,SF3A3"
TCGA.AA.A02F.01A	1	38447345	249210793	12339	0.1279	NEUTRAL	NA	1490	Too-Many
TCGA.AA.A02E.01A	1	38453196	120469070	4964	-0.146	NEUTRAL	NA	539	Too-Many
TCGA.AG.3611.01A	1	38463027	39325060	17	-0.0373	NEUTRAL	NA	4	"FHL3,POU3F1,RRAGC,UTP11L"
TCGA.AA.A00D.01A	1	38478420	39376955	24	0.0822	NEUTRAL	NA	6	"GJA9,MYCBP,POU3F1,RHBDL2,RRAGC,UTP11L"
TCGA.AA.3939.01A	1	38511095	53546369	1546	-0.2151	NEUTRAL	NA	169	Too-Many
TCGA.AA.3982	1	38626582	44912146	1709	0.2277	NEUTRAL	NA	83	"AKIRIN1,ARTN,ATP6V0B,B4GALT2,BMP8A,BMP8B,C1orf210,C1orf50,CAP1,CCDC23,CCDC24,CCDC30,CDC20,CFAP57,CITED4,CLDN19,COL9A2,CTPS1,DMAP1,DPH2,EBNA1BP2,EDN2,ELOVL1,ERI3,ERMAP,EXO5,FAM183A,FOXJ3,FOXO6,GJA9,GUCA2A,GUCA2B,HEYL,HIVEP3,HPCAL4,HYI,IPO13,KCNQ4,KDM4A,KIAA0754,KLF17,LOC100129924,MACF1,MED8,MFSD2A,MPL,MYCBP,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,P3H1,PABPC4,PPCS,PPIE,PPIH,PPT1,PTPRF,RHBDL2,RIMKLA,RIMS3,RLF,RNF220,RRAGC,SCMH1,SLC2A1,SLC6A9,SLFNL1,SMAP2,ST3GAL3,SZT2,TIE1,TMCO2,TMEM125,TRIT1,YBX1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684,ZNF691"
TCGA.AA.3872	1	38626582	77019985	11862	-0.1672	NEUTRAL	NA	276	Too-Many
TCGA.AG.4009.01A	1	39332550	39500014	17	-0.042	NEUTRAL	NA	5	"AKIRIN1,GJA9,MYCBP,NDUFS5,RHBDL2"
TCGA.AA.A010.01A	1	39338648	39500014	15	0.2655	NEUTRAL	NA	5	"AKIRIN1,GJA9,MYCBP,NDUFS5,RHBDL2"
TCGA.AG.3909.01A	1	39352129	39748811	20	-0.2134	NEUTRAL	NA	4	"AKIRIN1,MACF1,NDUFS5,RHBDL2"
TCGA.CK.5914.01A	1	39353567	39750704	21	-0.3447	NEUTRAL	NA	4	"AKIRIN1,MACF1,NDUFS5,RHBDL2"
TCGA.AA.A01Q.01A	1	39353567	39991282	114	0.2308	NEUTRAL	NA	6	"AKIRIN1,BMP8A,KIAA0754,MACF1,NDUFS5,RHBDL2"
TCGA.AA.A00N.01A	1	39358770	39723574	17	-0.3212	NEUTRAL	NA	4	"AKIRIN1,MACF1,NDUFS5,RHBDL2"
TCGA.AA.A00D.01A	1	39381204	40887601	236	-0.3431	NEUTRAL	NA	23	"AKIRIN1,BMP8A,BMP8B,CAP1,COL9A2,HEYL,HPCAL4,KIAA0754,MACF1,MFSD2A,MYCL,NDUFS5,NT5C1A,OXCT2,PABPC4,PPIE,PPT1,RHBDL2,RLF,SMAP2,TMCO2,TRIT1,ZMPSTE24"
TCGA.AA.A01C.01A	1	39494383	41454216	276	-0.4209	NEUTRAL	NA	30	"BMP8A,BMP8B,CAP1,CITED4,COL9A2,CTPS1,EXO5,HEYL,HPCAL4,KCNQ4,KIAA0754,MACF1,MFSD2A,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,PABPC4,PPIE,PPT1,RIMS3,RLF,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.AG.3611.01A	1	39549854	41976084	311	0.0633	NEUTRAL	NA	34	"BMP8A,BMP8B,CAP1,CITED4,COL9A2,CTPS1,EDN2,EXO5,FOXO6,HEYL,HIVEP3,HPCAL4,KCNQ4,KIAA0754,MACF1,MFSD2A,MYCL,NFYC,NT5C1A,OXCT2,PABPC4,PPIE,PPT1,RIMS3,RLF,SCMH1,SLFNL1,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.AF.3914.01A	1	39715671	39934240	92	0.0714	NEUTRAL	NA	2	"KIAA0754,MACF1"
TCGA.AG.3906.01A	1	39719952	39934240	91	-0.0719	NEUTRAL	NA	2	"KIAA0754,MACF1"
TCGA.AG.A00C.01A	1	39719952	40734069	193	0.0641	NEUTRAL	NA	18	"BMP8A,BMP8B,CAP1,HEYL,HPCAL4,KIAA0754,MACF1,MFSD2A,MYCL,NT5C1A,OXCT2,PABPC4,PPIE,PPT1,RLF,TMCO2,TRIT1,ZMPSTE24"
TCGA.AG.4009.01A	1	39723574	39853311	52	-0.0136	NEUTRAL	NA	1	MACF1
TCGA.AG.3909.01A	1	39749691	39853311	49	0.1503	NEUTRAL	NA	1	MACF1
TCGA.AA.A010.01A	1	39781144	39792863	10	-0.0604	NEUTRAL	NA	1	MACF1
TCGA.AG.3891.01A	1	39789827	40030726	79	0.0936	NEUTRAL	NA	4	"BMP8A,KIAA0754,MACF1,PABPC4"
TCGA.CK.5914.01A	1	39823015	39853311	15	-0.0753	NEUTRAL	NA	1	MACF1
TCGA.AA.3531	1	39845621	42088343	565	0.0402	NEUTRAL	NA	34	"BMP8A,BMP8B,CAP1,CITED4,COL9A2,CTPS1,EDN2,EXO5,FOXO6,HEYL,HIVEP3,HPCAL4,KCNQ4,KIAA0754,MACF1,MFSD2A,MYCL,NFYC,NT5C1A,OXCT2,PABPC4,PPIE,PPT1,RIMS3,RLF,SCMH1,SLFNL1,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.AA.A010.01A	1	39851059	39889653	10	-0.2718	NEUTRAL	NA	2	"KIAA0754,MACF1"
TCGA.AG.4009.01A	1	39888048	40092192	55	-0.2597	NEUTRAL	NA	4	"BMP8A,HEYL,MACF1,PABPC4"
TCGA.AG.3909.01A	1	39893080	40916582	170	-0.3254	NEUTRAL	NA	20	"BMP8A,BMP8B,CAP1,COL9A2,HEYL,HPCAL4,MACF1,MFSD2A,MYCL,NT5C1A,OXCT2,PABPC4,PPIE,PPT1,RLF,SMAP2,TMCO2,TRIT1,ZFP69B,ZMPSTE24"
TCGA.CK.5914.01A	1	39893586	39914249	19	0.1598	NEUTRAL	NA	1	MACF1
TCGA.AD.6890	1	39898643	48974932	2374	0.1224	NEUTRAL	NA	132	Too-Many
TCGA.AA.A00N.01A	1	39900121	39930714	25	0.2877	NEUTRAL	NA	1	MACF1
TCGA.AA.A010.01A	1	39906658	39924711	15	0.0455	NEUTRAL	NA	1	MACF1
TCGA.A6.6140	1	39911219	249198691	59298	0.0008	NEUTRAL	NA	1478	Too-Many
TCGA.AA.A00N.01A	1	39934240	40030726	19	-0.502	NEUTRAL	NA	3	"BMP8A,MACF1,PABPC4"
TCGA.AG.3906.01A	1	39986997	40033372	11	-0.0724	NEUTRAL	NA	2	"BMP8A,PABPC4"
TCGA.AG.A00Y.01A	1	40036859	43221187	278	-0.2262	NEUTRAL	NA	42	"BMP8B,CAP1,CCDC30,CITED4,CLDN19,COL9A2,CTPS1,EDN2,EXO5,FOXJ3,FOXO6,GUCA2A,GUCA2B,HEYL,HIVEP3,HPCAL4,KCNQ4,MFSD2A,MYCL,NFYC,NT5C1A,OXCT2,P3H1,PABPC4,PPCS,PPIE,PPIH,PPT1,RIMKLA,RIMS3,RLF,SCMH1,SLFNL1,SMAP2,TMCO2,TRIT1,YBX1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684"
TCGA.CM.6165.01A	1	40038017	40148181	14	-0.4966	NEUTRAL	NA	4	"HEYL,HPCAL4,NT5C1A,PABPC4"
TCGA.AA.A00N.01A	1	40105170	40887601	125	-0.2728	NEUTRAL	NA	16	"BMP8B,CAP1,COL9A2,HEYL,HPCAL4,MFSD2A,MYCL,NT5C1A,OXCT2,PPIE,PPT1,RLF,SMAP2,TMCO2,TRIT1,ZMPSTE24"
TCGA.AA.A01Q.01A	1	40105170	41236032	148	0.1372	NEUTRAL	NA	22	"BMP8B,CAP1,COL9A2,EXO5,HEYL,HPCAL4,MFSD2A,MYCL,NFYC,NT5C1A,OXCT2,PPIE,PPT1,RIMS3,RLF,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.CK.5914.01A	1	40105170	41236032	160	-0.1567	NEUTRAL	NA	22	"BMP8B,CAP1,COL9A2,EXO5,HEYL,HPCAL4,MFSD2A,MYCL,NFYC,NT5C1A,OXCT2,PPIE,PPT1,RIMS3,RLF,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.AG.3906.01A	1	40124813	41303955	161	-0.0215	NEUTRAL	NA	22	"BMP8B,CAP1,COL9A2,EXO5,HPCAL4,KCNQ4,MFSD2A,MYCL,NFYC,NT5C1A,OXCT2,PPIE,PPT1,RIMS3,RLF,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.AF.3914.01A	1	40124813	43200684	271	0.0423	NEUTRAL	NA	39	"BMP8B,CAP1,CCDC30,CITED4,CLDN19,COL9A2,CTPS1,EDN2,EXO5,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,HPCAL4,KCNQ4,MFSD2A,MYCL,NFYC,NT5C1A,OXCT2,PPCS,PPIE,PPIH,PPT1,RIMKLA,RIMS3,RLF,SCMH1,SLFNL1,SMAP2,TMCO2,TRIT1,YBX1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684"
TCGA.AG.3891.01A	1	40124813	45139942	557	0.14	NEUTRAL	NA	73	"ARTN,ATP6V0B,B4GALT2,BMP8B,C1orf210,C1orf50,CAP1,CCDC23,CCDC24,CCDC30,CDC20,CFAP57,CITED4,CLDN19,COL9A2,CTPS1,DMAP1,DPH2,EBNA1BP2,EDN2,ELOVL1,ERI3,ERMAP,EXO5,FAM183A,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,HPCAL4,HYI,IPO13,KCNQ4,KDM4A,KLF17,LOC100129924,MED8,MFSD2A,MPL,MYCL,NFYC,NT5C1A,OXCT2,P3H1,PPCS,PPIE,PPIH,PPT1,PTPRF,RIMKLA,RIMS3,RLF,RNF220,SCMH1,SLC2A1,SLC6A9,SLFNL1,SMAP2,ST3GAL3,SZT2,TIE1,TMCO2,TMEM125,TMEM53,TRIT1,YBX1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684,ZNF691"
TCGA.AA.A010.01A	1	40126704	40208847	13	0.131	NEUTRAL	NA	3	"HPCAL4,NT5C1A,PPIE"
TCGA.AG.4009.01A	1	40126704	40348940	33	-0.2296	NEUTRAL	NA	6	"BMP8B,HPCAL4,NT5C1A,OXCT2,PPIE,TRIT1"
TCGA.CM.6165.01A	1	40149581	154090161	6404	0.0288	NEUTRAL	NA	720	Too-Many
TCGA.A6.6653	1	40153140	49552035	2569	0.0052	NEUTRAL	NA	129	Too-Many
TCGA.AA.A02K.01A	1	40204493	41950151	191	-0.1016	NEUTRAL	NA	26	"BMP8B,CAP1,CITED4,COL9A2,CTPS1,EDN2,EXO5,FOXO6,KCNQ4,MFSD2A,MYCL,NFYC,OXCT2,PPIE,PPT1,RIMS3,RLF,SCMH1,SLFNL1,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.DM.A28H	1	40214943	40993872	171	0.082	NEUTRAL	NA	16	"BMP8B,CAP1,COL9A2,EXO5,MFSD2A,MYCL,OXCT2,PPIE,PPT1,RLF,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24"
TCGA.CA.6719	1	40246983	40259437	6	-0.1	NEUTRAL	NA	1	BMP8B
TCGA.A6.3808.01A	1	40313173	43159080	254	0.0733	NEUTRAL	NA	33	"CAP1,CCDC30,CITED4,COL9A2,CTPS1,EDN2,EXO5,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,KCNQ4,MFSD2A,MYCL,NFYC,PPCS,PPIH,PPT1,RIMKLA,RIMS3,RLF,SCMH1,SLFNL1,SMAP2,TMCO2,TRIT1,YBX1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684"
TCGA.AG.4009.01A	1	40422717	40769161	54	0.1832	NEUTRAL	NA	7	"CAP1,COL9A2,MFSD2A,PPT1,RLF,TMCO2,ZMPSTE24"
TCGA.AG.A00C.01A	1	40735605	41012182	48	0.3758	NEUTRAL	NA	7	"COL9A2,EXO5,SMAP2,ZFP69,ZFP69B,ZMPSTE24,ZNF684"
TCGA.AG.4009.01A	1	40769961	40771322	3	-0.5138	NEUTRAL	NA	1	COL9A2
TCGA.AG.4009.01A	1	40771740	40998745	31	-0.0911	NEUTRAL	NA	6	"COL9A2,EXO5,SMAP2,ZFP69,ZFP69B,ZNF684"
TCGA.AA.A00L.01A	1	40776315	71439939	1957	-0.4274	NEUTRAL	NA	236	Too-Many
TCGA.AA.A010.01A	1	40840323	41012182	27	-0.0862	NEUTRAL	NA	5	"EXO5,SMAP2,ZFP69,ZFP69B,ZNF684"
TCGA.AG.3890	1	40885831	249198691	58834	-0.0358	NEUTRAL	NA	1460	Too-Many
TCGA.AA.A00D.01A	1	40919816	40961004	11	0.1662	NEUTRAL	NA	2	"ZFP69,ZFP69B"
TCGA.AA.A00F.01A	1	40928096	40961004	8	0.2417	NEUTRAL	NA	2	"ZFP69,ZFP69B"
TCGA.AA.A00F.01A	1	40980207	41012182	5	-0.1112	NEUTRAL	NA	2	"EXO5,ZNF684"
TCGA.AG.3909.01A	1	40980207	41107330	11	-0.3419	NEUTRAL	NA	3	"EXO5,RIMS3,ZNF684"
TCGA.AA.A00D.01A	1	40980207	43408857	176	-0.3457	NEUTRAL	NA	29	"C1orf50,CCDC23,CCDC30,CITED4,CLDN19,CTPS1,EDN2,ERMAP,EXO5,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,KCNQ4,LOC100129924,NFYC,P3H1,PPCS,PPIH,RIMKLA,RIMS3,SCMH1,SLC2A1,SLFNL1,YBX1,ZMYND12,ZNF684,ZNF691"
TCGA.AG.4009.01A	1	41006208	41012182	3	-0.4114	NEUTRAL	NA	1	ZNF684
TCGA.5M.AAT4	1	41030463	100793038	18625	-0.4592	NEUTRAL	NA	354	Too-Many
TCGA.F5.6864	1	41045801	249198691	58879	0	NEUTRAL	NA	1455	Too-Many
TCGA.AA.A00F.01A	1	41092157	41232251	15	-0.4487	NEUTRAL	NA	2	"NFYC,RIMS3"
TCGA.AA.A00N.01A	1	41092157	41232251	15	0.3189	NEUTRAL	NA	2	"NFYC,RIMS3"
TCGA.AG.4009.01A	1	41092157	41303295	28	0.0774	NEUTRAL	NA	3	"KCNQ4,NFYC,RIMS3"
TCGA.AG.A00C.01A	1	41092157	41475775	45	0.1234	NEUTRAL	NA	5	"CITED4,CTPS1,KCNQ4,NFYC,RIMS3"
TCGA.AA.3976	1	41154242	249198691	58945	0.0075	NEUTRAL	NA	1454	Too-Many
TCGA.AA.A00N.01A	1	41232527	41296718	15	-0.4539	NEUTRAL	NA	2	"KCNQ4,NFYC"
TCGA.AA.A00F.01A	1	41234981	46165601	527	-0.0967	NEUTRAL	NA	77	"AKR1A1,ARTN,ATP6V0B,B4GALT2,BEST4,BTBD19,C1orf210,C1orf228,C1orf50,CCDC17,CCDC23,CCDC24,CCDC30,CDC20,CFAP57,CITED4,CLDN19,CTPS1,DMAP1,DPH2,EBNA1BP2,EDN2,EIF2B3,ELOVL1,ERI3,ERMAP,FAM183A,FOXJ3,FOXO6,GPBP1L1,GUCA2A,GUCA2B,HECTD3,HIVEP3,HPDL,HYI,IPO13,IPP,KCNQ4,KDM4A,KIF2C,KLF17,LOC100129924,MED8,MMACHC,MPL,MUTYH,NASP,NFYC,P3H1,PLK3,PPCS,PPIH,PRDX1,PTCH2,PTPRF,RIMKLA,RNF220,RPS8,SCMH1,SLC2A1,SLC6A9,SLFNL1,ST3GAL3,SZT2,TCTEX1D4,TESK2,TIE1,TMEM125,TMEM53,TMEM69,TOE1,UROD,YBX1,ZMYND12,ZNF691,ZSWIM5"
TCGA.CK.5914.01A	1	41237009	41475775	32	-0.4852	NEUTRAL	NA	4	"CITED4,CTPS1,KCNQ4,NFYC"
TCGA.AA.A010.01A	1	41249725	41303955	15	-0.2192	NEUTRAL	NA	1	KCNQ4
TCGA.AA.A01Q.01A	1	41282881	41485877	33	-0.427	NEUTRAL	NA	4	"CITED4,CTPS1,KCNQ4,SLFNL1"
TCGA.D5.6924	1	41388661	249198691	58775	0	NEUTRAL	NA	1451	Too-Many
TCGA.AG.3906.01A	1	41466644	42046743	36	-0.0512	NEUTRAL	NA	6	"CTPS1,EDN2,FOXO6,HIVEP3,SCMH1,SLFNL1"
TCGA.AG.4009.01A	1	41468765	43132152	89	0.0241	NEUTRAL	NA	14	"CCDC30,CTPS1,EDN2,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,PPCS,PPIH,RIMKLA,SCMH1,SLFNL1,ZMYND12"
TCGA.AA.A010.01A	1	41474282	43102861	83	0.3212	NEUTRAL	NA	13	"CCDC30,CTPS1,EDN2,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,PPCS,RIMKLA,SCMH1,SLFNL1,ZMYND12"
TCGA.CK.5914.01A	1	41481747	41499599	7	0.2601	NEUTRAL	NA	2	"SCMH1,SLFNL1"
TCGA.AA.A00N.01A	1	41481747	41503004	8	0.3564	NEUTRAL	NA	2	"SCMH1,SLFNL1"
TCGA.AG.A008.01A	1	41481747	41618211	17	-0.1576	NEUTRAL	NA	2	"SCMH1,SLFNL1"
TCGA.AG.A00C.01A	1	41481747	42743968	43	-0.2614	NEUTRAL	NA	8	"EDN2,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,SCMH1,SLFNL1"
TCGA.AA.A01C.01A	1	41481747	43215810	95	-0.3019	NEUTRAL	NA	16	"CCDC30,CLDN19,EDN2,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,P3H1,PPCS,PPIH,RIMKLA,SCMH1,SLFNL1,YBX1,ZMYND12"
TCGA.AG.3909.01A	1	41493836	43205512	89	-0.0403	NEUTRAL	NA	14	"CCDC30,CLDN19,EDN2,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,PPCS,PPIH,RIMKLA,SCMH1,YBX1,ZMYND12"
TCGA.AA.A01Q.01A	1	41582541	41847306	6	0.233	NEUTRAL	NA	2	"FOXO6,SCMH1"
TCGA.CK.5914.01A	1	41617235	41990379	18	-0.4531	NEUTRAL	NA	4	"EDN2,FOXO6,HIVEP3,SCMH1"
TCGA.AA.A00N.01A	1	41827554	41990379	12	-0.4882	NEUTRAL	NA	3	"EDN2,FOXO6,HIVEP3"
TCGA.AG.A008.01A	1	41847306	48937588	777	0.1591	NEUTRAL	NA	102	Too-Many
TCGA.AA.A01F.01A	1	41945030	41950150	5	0.1517	NEUTRAL	NA	1	EDN2
TCGA.AA.A01Q.01A	1	41976084	43162285	65	0.203	NEUTRAL	NA	10	"CCDC30,FOXJ3,GUCA2A,GUCA2B,HIVEP3,PPCS,PPIH,RIMKLA,YBX1,ZMYND12"
TCGA.AA.A01F.01A	1	41976084	43890435	176	-0.3144	NEUTRAL	NA	29	"C1orf210,C1orf50,CCDC23,CCDC30,CDC20,CFAP57,CLDN19,EBNA1BP2,ELOVL1,ERMAP,FAM183A,FOXJ3,GUCA2A,GUCA2B,HIVEP3,LOC100129924,MED8,MPL,P3H1,PPCS,PPIH,RIMKLA,SLC2A1,SZT2,TIE1,TMEM125,YBX1,ZMYND12,ZNF691"
TCGA.AG.3611.01A	1	41984020	47046150	576	0.0923	NEUTRAL	NA	82	"AKR1A1,ARTN,ATP6V0B,B4GALT2,BEST4,BTBD19,C1orf210,C1orf228,C1orf50,CCDC17,CCDC23,CCDC24,CCDC30,CDC20,CFAP57,CLDN19,DMAP1,DMBX1,DPH2,EBNA1BP2,EIF2B3,ELOVL1,ERI3,ERMAP,FAAH,FAM183A,FOXJ3,GPBP1L1,GUCA2A,GUCA2B,HECTD3,HIVEP3,HPDL,HYI,IPO13,IPP,KDM4A,KIF2C,KLF17,KNCN,LOC100129924,LRRC41,LURAP1,MAST2,MED8,MKNK1,MMACHC,MPL,MUTYH,NASP,NSUN4,P3H1,PIK3R3,PLK3,POMGNT1,PPCS,PPIH,PRDX1,PTCH2,PTPRF,RAD54L,RIMKLA,RNF220,RPS8,SLC2A1,SLC6A9,ST3GAL3,SZT2,TCTEX1D4,TESK2,TIE1,TMEM125,TMEM53,TMEM69,TOE1,TSPAN1,UQCRH,UROD,YBX1,ZMYND12,ZNF691,ZSWIM5"
TCGA.AA.A02K.01A	1	42041195	42049162	5	-0.4793	NEUTRAL	NA	1	HIVEP3
TCGA.AA.A02K.01A	1	42619069	43316642	95	-0.0254	NEUTRAL	NA	16	"C1orf50,CCDC23,CCDC30,CLDN19,ERMAP,FOXJ3,GUCA2A,GUCA2B,LOC100129924,P3H1,PPCS,PPIH,RIMKLA,YBX1,ZMYND12,ZNF691"
TCGA.AG.3906.01A	1	42671405	43132959	43	-0.0684	NEUTRAL	NA	6	"CCDC30,FOXJ3,PPCS,PPIH,RIMKLA,ZMYND12"
TCGA.AG.A00C.01A	1	42776701	43215810	52	0.0188	NEUTRAL	NA	9	"CCDC30,CLDN19,FOXJ3,P3H1,PPCS,PPIH,RIMKLA,YBX1,ZMYND12"
TCGA.AF.2693	1	42798310	44058142	366	0.3608	NEUTRAL	NA	28	"C1orf210,C1orf50,CCDC23,CCDC30,CDC20,CFAP57,CLDN19,EBNA1BP2,ELOVL1,ERMAP,FAM183A,FOXJ3,HYI,LOC100129924,MED8,MPL,P3H1,PPCS,PPIH,PTPRF,RIMKLA,SLC2A1,SZT2,TIE1,TMEM125,YBX1,ZMYND12,ZNF691"
TCGA.AA.3544	1	42885522	249198691	58498	0.0056	NEUTRAL	NA	1442	Too-Many
TCGA.CK.5914.01A	1	42896380	43124451	28	-0.2089	NEUTRAL	NA	4	"CCDC30,PPCS,PPIH,ZMYND12"
TCGA.CM.6172	1	42959295	249198691	58455	0.0069	NEUTRAL	NA	1439	Too-Many
TCGA.AG.A01W.01A	1	43045614	43089229	11	-0.3793	NEUTRAL	NA	1	CCDC30
TCGA.D5.6536	1	43055242	44771484	467	-0.0161	NEUTRAL	NA	36	"ARTN,ATP6V0B,B4GALT2,C1orf210,C1orf50,CCDC23,CCDC24,CCDC30,CDC20,CFAP57,CLDN19,DMAP1,DPH2,EBNA1BP2,ELOVL1,ERI3,ERMAP,FAM183A,HYI,IPO13,KDM4A,KLF17,LOC100129924,MED8,MPL,P3H1,PPIH,PTPRF,SLC2A1,SLC6A9,ST3GAL3,SZT2,TIE1,TMEM125,YBX1,ZNF691"
TCGA.AU.6004	1	43082524	249198691	57984	0	NEUTRAL	NA	1439	Too-Many
TCGA.AA.A00N.01A	1	43126483	43212358	16	-0.466	NEUTRAL	NA	4	"CLDN19,P3H1,PPIH,YBX1"
TCGA.AA.A01Q.01A	1	43162796	43282055	26	-0.3984	NEUTRAL	NA	6	"C1orf50,CCDC23,CLDN19,LOC100129924,P3H1,YBX1"
TCGA.AG.A01W.01A	1	43165263	43168837	6	0.3142	NEUTRAL	NA	1	YBX1
TCGA.AG.A01W.01A	1	43181445	43510943	26	-0.4196	NEUTRAL	NA	8	"C1orf50,CCDC23,CLDN19,ERMAP,LOC100129924,P3H1,SLC2A1,ZNF691"
TCGA.AA.A010.01A	1	43200684	43308196	38	-0.4268	NEUTRAL	NA	6	"C1orf50,CCDC23,CLDN19,ERMAP,LOC100129924,P3H1"
TCGA.A6.3808.01A	1	43213820	43774620	83	0.0375	NEUTRAL	NA	13	"C1orf210,C1orf50,CCDC23,CFAP57,EBNA1BP2,ERMAP,FAM183A,LOC100129924,P3H1,SLC2A1,TIE1,TMEM125,ZNF691"
TCGA.AG.A00Y.01A	1	43227962	55555252	1218	-0.2609	NEUTRAL	NA	149	Too-Many
TCGA.AG.A023.01A	1	43227962	109607113	3551	0.018	NEUTRAL	NA	366	Too-Many
TCGA.AG.4009.01A	1	43232177	43408857	22	-0.177	NEUTRAL	NA	7	"C1orf50,CCDC23,ERMAP,LOC100129924,P3H1,SLC2A1,ZNF691"
TCGA.AF.3914.01A	1	43232177	43652341	39	0.1589	NEUTRAL	NA	10	"C1orf50,CCDC23,CFAP57,EBNA1BP2,ERMAP,FAM183A,LOC100129924,P3H1,SLC2A1,ZNF691"
TCGA.AG.A00C.01A	1	43273027	43394561	15	0.2224	NEUTRAL	NA	4	"CCDC23,ERMAP,SLC2A1,ZNF691"
TCGA.AA.A00N.01A	1	43296071	43393229	13	-0.3519	NEUTRAL	NA	3	"ERMAP,SLC2A1,ZNF691"
TCGA.AA.A01Q.01A	1	43296071	43748417	40	0.1241	NEUTRAL	NA	8	"C1orf210,CFAP57,EBNA1BP2,ERMAP,FAM183A,SLC2A1,TMEM125,ZNF691"
TCGA.AG.3906.01A	1	43296482	43652341	31	-0.2037	NEUTRAL	NA	6	"CFAP57,EBNA1BP2,ERMAP,FAM183A,SLC2A1,ZNF691"
TCGA.AA.A01C.01A	1	43304496	44156475	161	-0.3422	NEUTRAL	NA	17	"C1orf210,CDC20,CFAP57,EBNA1BP2,ELOVL1,ERMAP,FAM183A,HYI,KDM4A,MED8,MPL,PTPRF,SLC2A1,SZT2,TIE1,TMEM125,ZNF691"
TCGA.AA.A010.01A	1	43315284	43408857	9	0.0889	NEUTRAL	NA	2	"SLC2A1,ZNF691"
TCGA.AA.A02K.01A	1	43392676	43408858	7	-0.4587	NEUTRAL	NA	1	SLC2A1
TCGA.AG.A00C.01A	1	43396109	43719611	26	-0.0954	NEUTRAL	NA	4	"CFAP57,EBNA1BP2,FAM183A,SLC2A1"
TCGA.AG.3909.01A	1	43396109	43770580	30	-0.3107	NEUTRAL	NA	7	"C1orf210,CFAP57,EBNA1BP2,FAM183A,SLC2A1,TIE1,TMEM125"
TCGA.AA.3955	1	43451337	105304917	19102	-0.0147	NEUTRAL	NA	343	Too-Many
TCGA.AA.A02K.01A	1	43510950	43831202	63	0.0693	NEUTRAL	NA	9	"C1orf210,CDC20,CFAP57,EBNA1BP2,ELOVL1,FAM183A,MPL,TIE1,TMEM125"
TCGA.AG.A01W.01A	1	43576051	44194543	127	-0.3518	NEUTRAL	NA	15	"C1orf210,CDC20,CFAP57,EBNA1BP2,ELOVL1,FAM183A,HYI,KDM4A,MED8,MPL,PTPRF,ST3GAL3,SZT2,TIE1,TMEM125"
TCGA.AZ.4684.01A	1	43610856	44489848	231	0.2585	NEUTRAL	NA	22	"ARTN,ATP6V0B,B4GALT2,C1orf210,CCDC24,CDC20,CFAP57,DPH2,EBNA1BP2,ELOVL1,FAM183A,HYI,IPO13,KDM4A,MED8,MPL,PTPRF,SLC6A9,ST3GAL3,SZT2,TIE1,TMEM125"
TCGA.AG.4009.01A	1	43613576	43675387	21	0.2345	NEUTRAL	NA	3	"CFAP57,EBNA1BP2,FAM183A"
TCGA.CK.5914.01A	1	43649234	43817884	50	0.0794	NEUTRAL	NA	5	"C1orf210,CFAP57,MPL,TIE1,TMEM125"
TCGA.AA.A00A.01A	1	43652341	44169656	144	-0.3381	NEUTRAL	NA	12	"C1orf210,CDC20,CFAP57,ELOVL1,HYI,KDM4A,MED8,MPL,PTPRF,SZT2,TIE1,TMEM125"
TCGA.AA.A010.01A	1	43663177	43687001	8	0.2442	NEUTRAL	NA	1	CFAP57
TCGA.AG.3906.01A	1	43663177	43818141	36	0.1487	NEUTRAL	NA	5	"C1orf210,CFAP57,MPL,TIE1,TMEM125"
TCGA.AF.3914.01A	1	43663177	43829555	44	-0.2365	NEUTRAL	NA	7	"C1orf210,CDC20,CFAP57,ELOVL1,MPL,TIE1,TMEM125"
TCGA.AA.A00D.01A	1	43689665	47148940	470	-0.327	NEUTRAL	NA	66	"AKR1A1,ARTN,ATP6V0B,ATPAF1,B4GALT2,BEST4,BTBD19,C1orf210,C1orf228,CCDC17,CCDC24,CDC20,CFAP57,DMAP1,DMBX1,DPH2,EFCAB14,EIF2B3,ELOVL1,ERI3,FAAH,GPBP1L1,HECTD3,HPDL,HYI,IPO13,IPP,KDM4A,KIF2C,KLF17,KNCN,LRRC41,LURAP1,MAST2,MED8,MKNK1,MMACHC,MOB3C,MPL,MUTYH,NASP,NSUN4,PIK3R3,PLK3,POMGNT1,PRDX1,PTCH2,PTPRF,RAD54L,RNF220,RPS8,SLC6A9,ST3GAL3,SZT2,TCTEX1D4,TESK2,TEX38,TIE1,TMEM125,TMEM53,TMEM69,TOE1,TSPAN1,UQCRH,UROD,ZSWIM5"
TCGA.AA.A00N.01A	1	43708851	43805583	27	-0.2202	NEUTRAL	NA	5	"C1orf210,CFAP57,MPL,TIE1,TMEM125"
TCGA.AA.A010.01A	1	43719611	43803478	22	0.0951	NEUTRAL	NA	5	"C1orf210,CFAP57,MPL,TIE1,TMEM125"
TCGA.AG.4009.01A	1	43738377	43806006	26	-0.2408	NEUTRAL	NA	4	"C1orf210,MPL,TIE1,TMEM125"
TCGA.AG.A00C.01A	1	43738377	43827825	35	0.2477	NEUTRAL	NA	5	"C1orf210,CDC20,MPL,TIE1,TMEM125"
TCGA.AA.A01Q.01A	1	43766683	43870003	50	-0.2007	NEUTRAL	NA	6	"CDC20,ELOVL1,MED8,MPL,SZT2,TIE1"
TCGA.AG.3909.01A	1	43779400	43805583	11	-0.4811	NEUTRAL	NA	2	"MPL,TIE1"
TCGA.A6.3808.01A	1	43831206	45189775	201	0.0617	NEUTRAL	NA	20	"ARTN,ATP6V0B,B4GALT2,C1orf228,CCDC24,DMAP1,DPH2,ELOVL1,ERI3,HYI,IPO13,KDM4A,KLF17,MED8,PTPRF,RNF220,SLC6A9,ST3GAL3,SZT2,TMEM53"
TCGA.AF.3914.01A	1	43850069	43870003	11	-0.0749	NEUTRAL	NA	2	"MED8,SZT2"
TCGA.AG.3906.01A	1	43850069	44365261	107	0.0427	NEUTRAL	NA	6	"HYI,KDM4A,MED8,PTPRF,ST3GAL3,SZT2"
TCGA.AA.A02K.01A	1	43850070	43907625	33	-0.2788	NEUTRAL	NA	2	"MED8,SZT2"
TCGA.AG.4009.01A	1	43850684	43855334	7	-0.1916	NEUTRAL	NA	1	MED8
TCGA.CK.5914.01A	1	43853950	43908493	31	0.157	NEUTRAL	NA	2	"MED8,SZT2"
TCGA.AA.A010.01A	1	43855334	43870003	4	-0.4521	NEUTRAL	NA	2	"MED8,SZT2"
TCGA.AG.4009.01A	1	43868797	43892726	9	0.1793	NEUTRAL	NA	1	SZT2
TCGA.AG.3909.01A	1	43868797	43912628	32	0.1364	NEUTRAL	NA	1	SZT2
TCGA.AG.A00C.01A	1	43869224	55050301	1022	0.0673	NEUTRAL	NA	121	Too-Many
TCGA.AA.A010.01A	1	43890435	43893632	7	0.0854	NEUTRAL	NA	1	SZT2
TCGA.AA.A01F.01A	1	43890732	43913733	31	0.0592	NEUTRAL	NA	1	SZT2
TCGA.AG.4009.01A	1	43893632	43908493	20	-0.0995	NEUTRAL	NA	1	SZT2
TCGA.AA.A010.01A	1	43895352	43898638	8	-0.4515	NEUTRAL	NA	1	SZT2
TCGA.AF.3914.01A	1	43896894	43906094	12	-0.1729	NEUTRAL	NA	1	SZT2
TCGA.AA.A00N.01A	1	43900821	43908493	10	0.0121	NEUTRAL	NA	1	SZT2
TCGA.AA.A02K.01A	1	43908501	46027413	287	-0.0601	NEUTRAL	NA	36	"AKR1A1,ARTN,ATP6V0B,B4GALT2,BEST4,BTBD19,C1orf228,CCDC24,DMAP1,DPH2,EIF2B3,ERI3,HECTD3,HPDL,HYI,IPO13,KDM4A,KIF2C,KLF17,MMACHC,MUTYH,PLK3,PRDX1,PTCH2,PTPRF,RNF220,RPS8,SLC6A9,ST3GAL3,SZT2,TCTEX1D4,TESK2,TMEM53,TOE1,UROD,ZSWIM5"
TCGA.AA.A01F.01A	1	43914265	45446666	201	-0.2709	NEUTRAL	NA	26	"ARTN,ATP6V0B,B4GALT2,BEST4,BTBD19,C1orf228,CCDC24,DMAP1,DPH2,EIF2B3,ERI3,HYI,IPO13,KDM4A,KIF2C,KLF17,PLK3,PTCH2,PTPRF,RNF220,RPS8,SLC6A9,ST3GAL3,SZT2,TCTEX1D4,TMEM53"
TCGA.DM.A28H	1	43991831	46985191	612	0.0476	NEUTRAL	NA	50	"AKR1A1,ARTN,ATP6V0B,B4GALT2,BEST4,BTBD19,C1orf228,CCDC17,CCDC24,DMAP1,DMBX1,DPH2,EIF2B3,ERI3,FAAH,GPBP1L1,HECTD3,HPDL,IPO13,IPP,KDM4A,KIF2C,KLF17,LRRC41,LURAP1,MAST2,MMACHC,MUTYH,NASP,NSUN4,PIK3R3,PLK3,POMGNT1,PRDX1,PTCH2,PTPRF,RAD54L,RNF220,RPS8,SLC6A9,ST3GAL3,TCTEX1D4,TESK2,TMEM53,TMEM69,TOE1,TSPAN1,UQCRH,UROD,ZSWIM5"
TCGA.AF.3914.01A	1	44010702	44149314	41	0.1546	NEUTRAL	NA	2	"KDM4A,PTPRF"
TCGA.AG.A01N.01A	1	44019124	55512149	1057	-0.2224	NEUTRAL	NA	129	Too-Many
TCGA.AA.A010.01A	1	44054351	44086077	22	0.2177	NEUTRAL	NA	1	PTPRF
TCGA.AG.4009.01A	1	44056643	44132073	29	0.3709	NEUTRAL	NA	2	"KDM4A,PTPRF"
TCGA.AF.2693	1	44062826	57793354	3806	-0.0162	NEUTRAL	NA	136	Too-Many
TCGA.AA.A00N.01A	1	44083389	44157147	22	0.2447	NEUTRAL	NA	2	"KDM4A,PTPRF"
TCGA.AA.A01Q.01A	1	44083389	44169656	28	-0.189	NEUTRAL	NA	2	"KDM4A,PTPRF"
TCGA.AG.3909.01A	1	44087549	44437540	52	-0.033	NEUTRAL	NA	6	"ARTN,DPH2,IPO13,KDM4A,PTPRF,ST3GAL3"
TCGA.CK.5914.01A	1	44128518	44440645	50	-0.0907	NEUTRAL	NA	6	"ARTN,ATP6V0B,DPH2,IPO13,KDM4A,ST3GAL3"
TCGA.AG.4009.01A	1	44132574	44157858	9	-0.1	NEUTRAL	NA	1	KDM4A
TCGA.AF.3914.01A	1	44154535	44201887	10	-0.375	NEUTRAL	NA	2	"KDM4A,ST3GAL3"
TCGA.AA.A01C.01A	1	44159648	45205553	90	-0.3795	NEUTRAL	NA	16	"ARTN,ATP6V0B,B4GALT2,C1orf228,CCDC24,DMAP1,DPH2,ERI3,IPO13,KDM4A,KIF2C,KLF17,RNF220,SLC6A9,ST3GAL3,TMEM53"
TCGA.AA.A010.01A	1	44201887	44365261	9	0.168	NEUTRAL	NA	1	ST3GAL3
TCGA.AA.A01Q.01A	1	44201887	44386424	11	0.3572	NEUTRAL	NA	1	ST3GAL3
TCGA.AG.4009.01A	1	44201887	44386424	11	-0.021	NEUTRAL	NA	1	ST3GAL3
TCGA.AG.A01W.01A	1	44209610	44892792	58	-0.266	NEUTRAL	NA	12	"ARTN,ATP6V0B,B4GALT2,CCDC24,DMAP1,DPH2,ERI3,IPO13,KLF17,RNF220,SLC6A9,ST3GAL3"
TCGA.AF.3914.01A	1	44257705	44386424	10	0.1909	NEUTRAL	NA	1	ST3GAL3
TCGA.AA.A00A.01A	1	44386424	45101180	69	-0.4184	NEUTRAL	NA	12	"ARTN,ATP6V0B,B4GALT2,CCDC24,DMAP1,DPH2,ERI3,IPO13,KLF17,RNF220,SLC6A9,ST3GAL3"
TCGA.AA.A01Q.01A	1	44395761	44440645	22	-0.5092	NEUTRAL	NA	5	"ARTN,ATP6V0B,DPH2,IPO13,ST3GAL3"
TCGA.AG.4009.01A	1	44401602	44435800	14	-0.3898	NEUTRAL	NA	3	"ARTN,DPH2,IPO13"
TCGA.AF.3914.01A	1	44421955	44437540	15	-0.0293	NEUTRAL	NA	2	"DPH2,IPO13"
TCGA.CM.4752	1	44442520	47404185	610	0.2027	NEUTRAL	NA	52	"AKR1A1,ATP6V0B,ATPAF1,B4GALT2,BEST4,BTBD19,C1orf228,CCDC17,CCDC24,CYP4A11,CYP4B1,DMAP1,DMBX1,EFCAB14,EIF2B3,ERI3,FAAH,GPBP1L1,HECTD3,HPDL,IPP,KIF2C,KLF17,KNCN,LRRC41,LURAP1,MAST2,MKNK1,MMACHC,MOB3C,MUTYH,NASP,NSUN4,PIK3R3,PLK3,POMGNT1,PRDX1,PTCH2,RAD54L,RNF220,RPS8,SLC6A9,TCTEX1D4,TESK2,TEX38,TMEM53,TMEM69,TOE1,TSPAN1,UQCRH,UROD,ZSWIM5"
TCGA.CK.5914.01A	1	44446786	46182516	244	-0.4698	NEUTRAL	NA	32	"AKR1A1,B4GALT2,BEST4,BTBD19,C1orf228,CCDC17,CCDC24,DMAP1,EIF2B3,ERI3,GPBP1L1,HECTD3,HPDL,IPP,KIF2C,KLF17,MMACHC,MUTYH,NASP,PLK3,PRDX1,PTCH2,RNF220,RPS8,SLC6A9,TCTEX1D4,TESK2,TMEM53,TMEM69,TOE1,UROD,ZSWIM5"
TCGA.AG.4009.01A	1	44459496	44489848	11	-0.1513	NEUTRAL	NA	2	"CCDC24,SLC6A9"
TCGA.AA.A00N.01A	1	44460711	44804666	32	0.2655	NEUTRAL	NA	5	"CCDC24,DMAP1,ERI3,KLF17,SLC6A9"
TCGA.AG.3906.01A	1	44461221	44489848	10	0.345	NEUTRAL	NA	2	"CCDC24,SLC6A9"
TCGA.AF.3914.01A	1	44461221	44684678	17	0.109	NEUTRAL	NA	4	"CCDC24,DMAP1,KLF17,SLC6A9"
TCGA.AA.A010.01A	1	44473985	44489848	6	-0.436	NEUTRAL	NA	1	SLC6A9
TCGA.AA.A01Q.01A	1	44476369	45079795	25	-0.1133	NEUTRAL	NA	5	"DMAP1,ERI3,KLF17,RNF220,SLC6A9"
TCGA.AG.4009.01A	1	44584519	44785248	17	0.3715	NEUTRAL	NA	3	"DMAP1,ERI3,KLF17"
TCGA.AG.3906.01A	1	44594983	44877722	20	-0.1561	NEUTRAL	NA	4	"DMAP1,ERI3,KLF17,RNF220"
TCGA.AA.3930.01A	1	44594983	45253014	72	-0.114	NEUTRAL	NA	9	"BEST4,C1orf228,DMAP1,ERI3,KIF2C,KLF17,RNF220,RPS8,TMEM53"
TCGA.AG.3909.01A	1	44713563	44820514	8	0.1014	NEUTRAL	NA	1	ERI3
TCGA.AF.3914.01A	1	44750444	44804666	5	-0.2194	NEUTRAL	NA	1	ERI3
TCGA.AA.3982	1	44920991	44936511	9	-0.3378	NEUTRAL	NA	1	RNF220
TCGA.AA.3982	1	44937973	47089616	419	0.3228	NEUTRAL	NA	40	"AKR1A1,BEST4,BTBD19,C1orf228,CCDC17,DMBX1,EIF2B3,FAAH,GPBP1L1,HECTD3,HPDL,IPP,KIF2C,KNCN,LRRC41,LURAP1,MAST2,MKNK1,MMACHC,MOB3C,MUTYH,NASP,NSUN4,PIK3R3,PLK3,POMGNT1,PRDX1,PTCH2,RAD54L,RNF220,RPS8,TCTEX1D4,TESK2,TMEM53,TMEM69,TOE1,TSPAN1,UQCRH,UROD,ZSWIM5"
TCGA.AG.A01W.01A	1	45013762	45038684	12	-0.1413	NEUTRAL	NA	1	RNF220
TCGA.AG.A01W.01A	1	45039883	45050228	10	0.3038	NEUTRAL	NA	1	RNF220
TCGA.AF.3914.01A	1	45101665	45250313	35	-0.1349	NEUTRAL	NA	6	"BEST4,C1orf228,KIF2C,RNF220,RPS8,TMEM53"
TCGA.AA.A00A.01A	1	45101665	45341228	61	-0.1008	NEUTRAL	NA	11	"BEST4,BTBD19,C1orf228,EIF2B3,KIF2C,PLK3,PTCH2,RNF220,RPS8,TCTEX1D4,TMEM53"
TCGA.AG.4009.01A	1	45110360	45253014	34	0.0912	NEUTRAL	NA	6	"BEST4,C1orf228,KIF2C,RNF220,RPS8,TMEM53"
TCGA.AA.A010.01A	1	45115332	45139942	5	0.2644	NEUTRAL	NA	2	"RNF220,TMEM53"
TCGA.AA.A01Q.01A	1	45120240	45347263	64	-0.2786	NEUTRAL	NA	10	"BEST4,BTBD19,C1orf228,EIF2B3,KIF2C,PLK3,PTCH2,RPS8,TCTEX1D4,TMEM53"
TCGA.AG.3909.01A	1	45139942	45241677	22	-0.3056	NEUTRAL	NA	4	"C1orf228,KIF2C,RPS8,TMEM53"
TCGA.A6.3808.01A	1	45190769	46871301	286	-0.4723	NEUTRAL	NA	34	"AKR1A1,BEST4,BTBD19,C1orf228,CCDC17,EIF2B3,FAAH,GPBP1L1,HECTD3,HPDL,IPP,KIF2C,LRRC41,LURAP1,MAST2,MMACHC,MUTYH,NASP,NSUN4,PIK3R3,PLK3,POMGNT1,PRDX1,PTCH2,RAD54L,RPS8,TCTEX1D4,TESK2,TMEM69,TOE1,TSPAN1,UQCRH,UROD,ZSWIM5"
TCGA.AA.A010.01A	1	45213277	45308470	54	-0.1913	NEUTRAL	NA	7	"BEST4,BTBD19,KIF2C,PLK3,PTCH2,RPS8,TCTEX1D4"
TCGA.AA.3531	1	45218541	50095384	1218	0.0349	NEUTRAL	NA	56	"AGBL4,AKR1A1,ATPAF1,BEND5,BEST4,BTBD19,CCDC17,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,EFCAB14,EIF2B3,FAAH,FOXD2,FOXE3,GPBP1L1,HECTD3,HPDL,IPP,KIF2C,KNCN,LRRC41,LURAP1,MAST2,MKNK1,MMACHC,MOB3C,MUTYH,NASP,NSUN4,PDZK1IP1,PIK3R3,PLK3,POMGNT1,PRDX1,PTCH2,RAD54L,RPS8,SLC5A9,SPATA6,STIL,TAL1,TCTEX1D4,TESK2,TEX38,TMEM69,TOE1,TRABD2B,TSPAN1,UQCRH,UROD,ZSWIM5"
TCGA.AA.A01C.01A	1	45218752	46295064	165	-0.4063	NEUTRAL	NA	24	"AKR1A1,BEST4,BTBD19,CCDC17,EIF2B3,GPBP1L1,HECTD3,HPDL,IPP,KIF2C,MAST2,MMACHC,MUTYH,NASP,PLK3,PRDX1,PTCH2,RPS8,TCTEX1D4,TESK2,TMEM69,TOE1,UROD,ZSWIM5"
TCGA.A6.3810.01A	1	45223510	53308499	736	-0.1264	NEUTRAL	NA	80	"AGBL4,AKR1A1,ATPAF1,BEND5,BEST4,BTBD19,BTF3L4,C1orf185,CC2D1B,CCDC17,CDKN2C,CMPK1,COA7,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,DMRTA2,EFCAB14,EIF2B3,ELAVL4,EPS15,FAAH,FAF1,FAM159A,FOXD2,FOXE3,GPBP1L1,GPX7,HECTD3,HPDL,IPP,KIF2C,KNCN,KTI12,LRRC41,LURAP1,MAST2,MKNK1,MMACHC,MOB3C,MUTYH,NASP,NRD1,NSUN4,ORC1,OSBPL9,PDZK1IP1,PIK3R3,PLK3,POMGNT1,PRDX1,PRPF38A,PTCH2,RAB3B,RAD54L,RNF11,RPS8,SLC5A9,SPATA6,STIL,TAL1,TCTEX1D4,TESK2,TEX38,TMEM69,TOE1,TRABD2B,TSPAN1,TTC39A,TXNDC12,UQCRH,UROD,ZCCHC11,ZFYVE9,ZSWIM5,ZYG11A,ZYG11B"
TCGA.AG.3906.01A	1	45241174	45271628	17	0.0642	NEUTRAL	NA	4	"BEST4,PLK3,RPS8,TCTEX1D4"
TCGA.AG.3891.01A	1	45241174	53516247	690	0.1242	NEUTRAL	NA	81	"AGBL4,AKR1A1,ATPAF1,BEND5,BEST4,BTBD19,BTF3L4,C1orf185,CC2D1B,CCDC17,CDKN2C,CMPK1,COA7,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,DMRTA2,ECHDC2,EFCAB14,EIF2B3,ELAVL4,EPS15,FAAH,FAF1,FAM159A,FOXD2,FOXE3,GPBP1L1,GPX7,HECTD3,HPDL,IPP,KNCN,KTI12,LRRC41,LURAP1,MAST2,MKNK1,MMACHC,MOB3C,MUTYH,NASP,NRD1,NSUN4,ORC1,OSBPL9,PDZK1IP1,PIK3R3,PLK3,POMGNT1,PRDX1,PRPF38A,PTCH2,RAB3B,RAD54L,RNF11,RPS8,SCP2,SLC5A9,SPATA6,STIL,TAL1,TCTEX1D4,TESK2,TEX38,TMEM69,TOE1,TRABD2B,TSPAN1,TTC39A,TXNDC12,UQCRH,UROD,ZCCHC11,ZFYVE9,ZSWIM5,ZYG11A,ZYG11B"
TCGA.AG.A01W.01A	1	45247343	45252700	8	0.1885	NEUTRAL	NA	1	BEST4
TCGA.AG.A01W.01A	1	45253559	45733271	43	-0.4323	NEUTRAL	NA	8	"BTBD19,EIF2B3,HECTD3,PLK3,PTCH2,TCTEX1D4,UROD,ZSWIM5"
TCGA.AG.4009.01A	1	45271628	45297326	12	-0.2533	NEUTRAL	NA	4	"BTBD19,PLK3,PTCH2,TCTEX1D4"
TCGA.AG.3906.01A	1	45287454	45294599	8	-0.3748	NEUTRAL	NA	1	PTCH2
TCGA.AA.A00N.01A	1	45288110	45296490	9	0.0811	NEUTRAL	NA	1	PTCH2
TCGA.AA.3980.01A	1	45288699	53541487	737	-0.1358	NEUTRAL	NA	77	"AGBL4,AKR1A1,ATPAF1,BEND5,BTF3L4,C1orf185,CC2D1B,CCDC17,CDKN2C,CMPK1,COA7,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,DMRTA2,ECHDC2,EFCAB14,EIF2B3,ELAVL4,EPS15,FAAH,FAF1,FAM159A,FOXD2,FOXE3,GPBP1L1,GPX7,HECTD3,HPDL,IPP,KNCN,KTI12,LRRC41,LURAP1,MAST2,MKNK1,MMACHC,MOB3C,MUTYH,NASP,NRD1,NSUN4,ORC1,OSBPL9,PDZK1IP1,PIK3R3,PODN,POMGNT1,PRDX1,PRPF38A,PTCH2,RAB3B,RAD54L,RNF11,SCP2,SLC5A9,SPATA6,STIL,TAL1,TESK2,TEX38,TMEM69,TOE1,TRABD2B,TSPAN1,TTC39A,TXNDC12,UQCRH,UROD,ZCCHC11,ZFYVE9,ZSWIM5,ZYG11A,ZYG11B"
TCGA.AG.3906.01A	1	45295559	45316548	6	0.0626	NEUTRAL	NA	2	"EIF2B3,PTCH2"
TCGA.AA.3930.01A	1	45295559	45473864	24	-0.2671	NEUTRAL	NA	3	"EIF2B3,HECTD3,PTCH2"
TCGA.AG.4009.01A	1	45362970	45472853	11	0.0767	NEUTRAL	NA	2	"EIF2B3,HECTD3"
TCGA.AA.A01Q.01A	1	45362970	45974428	39	0.0603	NEUTRAL	NA	9	"EIF2B3,HECTD3,HPDL,MMACHC,MUTYH,TESK2,TOE1,UROD,ZSWIM5"
TCGA.AG.3906.01A	1	45392260	45473864	11	-0.0107	NEUTRAL	NA	2	"EIF2B3,HECTD3"
TCGA.AF.3914.01A	1	45407151	45923189	57	0.0257	NEUTRAL	NA	8	"EIF2B3,HECTD3,HPDL,MUTYH,TESK2,TOE1,UROD,ZSWIM5"
TCGA.AA.A010.01A	1	45407151	46165601	113	0.3622	NEUTRAL	NA	16	"AKR1A1,CCDC17,EIF2B3,GPBP1L1,HECTD3,HPDL,IPP,MMACHC,MUTYH,NASP,PRDX1,TESK2,TMEM69,TOE1,UROD,ZSWIM5"
TCGA.DM.A285	1	45429681	249198691	57651	-0.1452	NEUTRAL	NA	1393	Too-Many
TCGA.AA.A00A.01A	1	45446666	89480182	1945	-0.4311	NEUTRAL	NA	232	Too-Many
TCGA.AA.A01F.01A	1	45469110	45524241	10	0.1808	NEUTRAL	NA	3	"HECTD3,UROD,ZSWIM5"
TCGA.AG.4009.01A	1	45473864	45516704	21	-0.2655	NEUTRAL	NA	3	"HECTD3,UROD,ZSWIM5"
TCGA.AG.3906.01A	1	45474759	45484077	12	-0.4011	NEUTRAL	NA	3	"HECTD3,UROD,ZSWIM5"
TCGA.AG.3906.01A	1	45485681	46165601	85	-0.0168	NEUTRAL	NA	13	"AKR1A1,CCDC17,GPBP1L1,HPDL,IPP,MMACHC,MUTYH,NASP,PRDX1,TESK2,TMEM69,TOE1,ZSWIM5"
TCGA.AA.3930.01A	1	45485681	46496642	121	-0.2939	NEUTRAL	NA	14	"AKR1A1,CCDC17,GPBP1L1,HPDL,IPP,MAST2,MMACHC,MUTYH,NASP,PRDX1,TESK2,TMEM69,TOE1,ZSWIM5"
TCGA.AG.3909.01A	1	45499933	45525724	9	0.2356	NEUTRAL	NA	1	ZSWIM5
TCGA.AG.4009.01A	1	45524241	45923189	25	0.0879	NEUTRAL	NA	5	"HPDL,MUTYH,TESK2,TOE1,ZSWIM5"
TCGA.AG.A01W.01A	1	45734753	45738541	4	0.1519	NEUTRAL	NA	0	None
TCGA.AG.4015	1	45763541	46119350	71	-0.2621	NEUTRAL	NA	10	"AKR1A1,CCDC17,GPBP1L1,HPDL,MMACHC,MUTYH,NASP,PRDX1,TESK2,TOE1"
TCGA.AA.A01F.01A	1	45792784	46081948	39	-0.3279	NEUTRAL	NA	8	"AKR1A1,HPDL,MMACHC,MUTYH,NASP,PRDX1,TESK2,TOE1"
TCGA.AG.A01W.01A	1	45866475	46270447	45	-0.4883	NEUTRAL	NA	10	"AKR1A1,CCDC17,GPBP1L1,IPP,MAST2,MMACHC,NASP,PRDX1,TESK2,TMEM69"
TCGA.AF.3914.01A	1	45972980	46184828	50	0.047	NEUTRAL	NA	8	"AKR1A1,CCDC17,GPBP1L1,IPP,MMACHC,NASP,PRDX1,TMEM69"
TCGA.AG.4009.01A	1	45973852	46165601	46	0.0597	NEUTRAL	NA	8	"AKR1A1,CCDC17,GPBP1L1,IPP,MMACHC,NASP,PRDX1,TMEM69"
TCGA.EI.6885	1	45978922	118920491	22896	-0.3309	NEUTRAL	NA	422	Too-Many
TCGA.AA.A01Q.01A	1	46027412	46211821	46	0.0697	NEUTRAL	NA	6	"AKR1A1,CCDC17,GPBP1L1,IPP,NASP,TMEM69"
TCGA.AA.A02K.01A	1	46049753	55509467	870	-0.057	NEUTRAL	NA	95	"ACOT11,AGBL4,ATPAF1,BEND5,BSND,BTF3L4,C1orf123,C1orf177,C1orf185,CC2D1B,CCDC17,CDCP2,CDKN2C,CMPK1,COA7,CPT2,CYB5RL,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DHCR24,DIO1,DMBX1,DMRTA2,DMRTB1,ECHDC2,EFCAB14,ELAVL4,EPS15,FAAH,FAF1,FAM151A,FAM159A,FOXD2,FOXE3,GLIS1,GPBP1L1,GPX7,HSPB11,IPP,KNCN,KTI12,LDLRAD1,LRP8,LRRC41,LRRC42,LURAP1,MAGOH,MAST2,MKNK1,MOB3C,MROH7,MRPL37,NASP,NDC1,NRD1,NSUN4,ORC1,OSBPL9,PARS2,PCSK9,PDZK1IP1,PIK3R3,PODN,POMGNT1,PRPF38A,RAB3B,RAD54L,RNF11,SCP2,SLC1A7,SLC5A9,SPATA6,SSBP3,STIL,TAL1,TCEANC2,TEX38,TMEM59,TMEM61,TMEM69,TRABD2B,TSPAN1,TTC22,TTC39A,TTC4,TXNDC12,UQCRH,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AA.A01F.01A	1	46082270	46087884	7	0.0044	NEUTRAL	NA	2	"CCDC17,NASP"
TCGA.AA.A01F.01A	1	46088200	52823166	397	-0.2854	NEUTRAL	NA	53	"AGBL4,ATPAF1,BEND5,BTF3L4,C1orf185,CC2D1B,CCDC17,CDKN2C,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,DMRTA2,EFCAB14,ELAVL4,EPS15,FAAH,FAF1,FOXD2,FOXE3,GPBP1L1,IPP,KNCN,KTI12,LRRC41,LURAP1,MAST2,MKNK1,MOB3C,NRD1,NSUN4,OSBPL9,PDZK1IP1,PIK3R3,POMGNT1,RAB3B,RAD54L,RNF11,SLC5A9,SPATA6,STIL,TAL1,TEX38,TMEM69,TRABD2B,TSPAN1,TTC39A,TXNDC12,UQCRH,ZFYVE9"
TCGA.AG.3906.01A	1	46206556	46295064	4	0.3339	NEUTRAL	NA	2	"IPP,MAST2"
TCGA.AG.4015	1	46221616	46273182	14	0.2095	NEUTRAL	NA	1	MAST2
TCGA.AG.A01W.01A	1	46270805	46435925	29	-0.1275	NEUTRAL	NA	1	MAST2
TCGA.AG.4015	1	46288351	48809179	723	-0.3275	NEUTRAL	NA	31	"ATPAF1,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,EFCAB14,FAAH,FOXD2,FOXE3,KNCN,LRRC41,LURAP1,MAST2,MKNK1,MOB3C,NSUN4,PDZK1IP1,PIK3R3,POMGNT1,RAD54L,SLC5A9,SPATA6,STIL,TAL1,TEX38,TRABD2B,TSPAN1,UQCRH"
TCGA.AG.4009.01A	1	46290068	46468420	7	-0.122	NEUTRAL	NA	1	MAST2
TCGA.AF.3914.01A	1	46290068	46498217	24	-0.0321	NEUTRAL	NA	1	MAST2
TCGA.AG.3909.01A	1	46290068	46546267	37	0.148	NEUTRAL	NA	2	"MAST2,PIK3R3"
TCGA.CK.5914.01A	1	46290068	46546267	37	0.2	NEUTRAL	NA	2	"MAST2,PIK3R3"
TCGA.AA.A01C.01A	1	46347950	46509295	27	0.069	NEUTRAL	NA	2	"MAST2,PIK3R3"
TCGA.AG.3906.01A	1	46347950	46646709	37	-0.1503	NEUTRAL	NA	3	"MAST2,PIK3R3,TSPAN1"
TCGA.AG.4009.01A	1	46471876	46646709	32	0.2447	NEUTRAL	NA	3	"MAST2,PIK3R3,TSPAN1"
TCGA.AA.A00F.01A	1	46489417	52442515	337	-0.2316	NEUTRAL	NA	44	"AGBL4,ATPAF1,BEND5,C1orf185,CDKN2C,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,DMRTA2,EFCAB14,ELAVL4,EPS15,FAAH,FAF1,FOXD2,FOXE3,KNCN,LRRC41,LURAP1,MAST2,MKNK1,MOB3C,NRD1,NSUN4,OSBPL9,PDZK1IP1,PIK3R3,POMGNT1,RAB3B,RAD54L,RNF11,SLC5A9,SPATA6,STIL,TAL1,TEX38,TRABD2B,TSPAN1,TTC39A,UQCRH"
TCGA.AA.3930.01A	1	46499426	47030700	94	-0.3467	NEUTRAL	NA	13	"DMBX1,FAAH,KNCN,LRRC41,LURAP1,MAST2,MKNK1,NSUN4,PIK3R3,POMGNT1,RAD54L,TSPAN1,UQCRH"
TCGA.AG.A02X.01A	1	46500196	109565940	3112	0.2368	NEUTRAL	NA	307	Too-Many
TCGA.AF.3914.01A	1	46501098	46597506	11	0.1036	NEUTRAL	NA	2	"MAST2,PIK3R3"
TCGA.AA.A010.01A	1	46509295	46597506	10	0.164	NEUTRAL	NA	1	PIK3R3
TCGA.AA.A01Q.01A	1	46509295	46597506	10	0.0812	NEUTRAL	NA	1	PIK3R3
TCGA.AA.A00N.01A	1	46509295	46782139	57	-0.382	NEUTRAL	NA	7	"LRRC41,LURAP1,PIK3R3,POMGNT1,RAD54L,TSPAN1,UQCRH"
TCGA.AA.A01C.01A	1	46511573	47144116	105	-0.4453	NEUTRAL	NA	16	"ATPAF1,DMBX1,EFCAB14,FAAH,KNCN,LRRC41,LURAP1,MKNK1,MOB3C,NSUN4,PIK3R3,POMGNT1,RAD54L,TEX38,TSPAN1,UQCRH"
TCGA.AG.A015.01A	1	46543140	46663337	21	0.3606	NEUTRAL	NA	3	"PIK3R3,POMGNT1,TSPAN1"
TCGA.AG.3909.01A	1	46597506	46782139	48	-0.3769	NEUTRAL	NA	7	"LRRC41,LURAP1,PIK3R3,POMGNT1,RAD54L,TSPAN1,UQCRH"
TCGA.AG.A01W.01A	1	46640309	46649811	9	-0.1528	NEUTRAL	NA	2	"PIK3R3,TSPAN1"
TCGA.AA.A01Q.01A	1	46669048	46751785	23	0.0431	NEUTRAL	NA	4	"LRRC41,LURAP1,POMGNT1,RAD54L"
TCGA.AF.3914.01A	1	46669048	47059712	69	-0.0657	NEUTRAL	NA	10	"DMBX1,FAAH,KNCN,LRRC41,LURAP1,MKNK1,NSUN4,POMGNT1,RAD54L,UQCRH"
TCGA.AG.A015.01A	1	46669048	109780372	3108	-0.1455	NEUTRAL	NA	309	Too-Many
TCGA.AG.4009.01A	1	46724287	46867716	32	-0.0776	NEUTRAL	NA	5	"FAAH,LRRC41,NSUN4,RAD54L,UQCRH"
TCGA.AG.3906.01A	1	46724287	53547614	482	0.0375	NEUTRAL	NA	55	"AGBL4,ATPAF1,BEND5,BTF3L4,C1orf185,CC2D1B,CDKN2C,CMPK1,COA7,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,DMRTA2,ECHDC2,EFCAB14,ELAVL4,EPS15,FAAH,FAF1,FAM159A,FOXD2,FOXE3,GPX7,KNCN,KTI12,LRRC41,MKNK1,MOB3C,NRD1,NSUN4,ORC1,OSBPL9,PDZK1IP1,PODN,PRPF38A,RAB3B,RAD54L,RNF11,SCP2,SLC5A9,SPATA6,STIL,TAL1,TEX38,TRABD2B,TTC39A,TXNDC12,UQCRH,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.CK.5914.01A	1	46725589	46750982	17	0.018	NEUTRAL	NA	2	"LRRC41,RAD54L"
TCGA.AA.A010.01A	1	46736304	46859993	27	0.2731	NEUTRAL	NA	5	"FAAH,LRRC41,NSUN4,RAD54L,UQCRH"
TCGA.AG.3909.01A	1	46806444	47051452	37	-0.0223	NEUTRAL	NA	5	"DMBX1,FAAH,KNCN,MKNK1,NSUN4"
TCGA.CK.5914.01A	1	46806444	47183537	66	-0.0171	NEUTRAL	NA	9	"ATPAF1,DMBX1,EFCAB14,FAAH,KNCN,MKNK1,MOB3C,NSUN4,TEX38"
TCGA.AA.A01Q.01A	1	46870635	47183537	53	-0.2348	NEUTRAL	NA	8	"ATPAF1,DMBX1,EFCAB14,FAAH,KNCN,MKNK1,MOB3C,TEX38"
TCGA.AG.4009.01A	1	46877202	47059712	22	0.0661	NEUTRAL	NA	4	"DMBX1,FAAH,KNCN,MKNK1"
TCGA.AG.A01W.01A	1	46921513	47462209	64	-0.1809	NEUTRAL	NA	9	"ATPAF1,CYP4A11,CYP4B1,DMBX1,EFCAB14,KNCN,MKNK1,MOB3C,TEX38"
TCGA.AA.A00N.01A	1	47013340	47051452	16	-0.2113	NEUTRAL	NA	2	"KNCN,MKNK1"
TCGA.AA.3862.01A	1	47014821	47534242	75	-0.441	NEUTRAL	NA	10	"ATPAF1,CYP4A11,CYP4B1,CYP4X1,CYP4Z1,EFCAB14,KNCN,MKNK1,MOB3C,TEX38"
TCGA.AA.3930.01A	1	47034045	47173571	31	0.0175	NEUTRAL	NA	5	"ATPAF1,EFCAB14,MKNK1,MOB3C,TEX38"
TCGA.AG.3611.01A	1	47048860	47162172	23	-0.2186	NEUTRAL	NA	5	"ATPAF1,EFCAB14,MKNK1,MOB3C,TEX38"
TCGA.AG.4009.01A	1	47075240	47162172	20	-0.4856	NEUTRAL	NA	4	"ATPAF1,EFCAB14,MOB3C,TEX38"
TCGA.AA.3982	1	47091148	47258218	64	-0.0375	NEUTRAL	NA	3	"ATPAF1,EFCAB14,TEX38"
TCGA.AF.3914.01A	1	47101451	51323559	163	0.0405	NEUTRAL	NA	22	"AGBL4,ATPAF1,BEND5,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMRTA2,EFCAB14,ELAVL4,FAF1,FOXD2,FOXE3,PDZK1IP1,SLC5A9,SPATA6,STIL,TAL1,TEX38,TRABD2B"
TCGA.AA.A01C.01A	1	47148940	47650635	62	0.0992	NEUTRAL	NA	7	"CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,EFCAB14,PDZK1IP1"
TCGA.AG.4009.01A	1	47173571	55051443	537	-0.0176	NEUTRAL	NA	64	"ACOT11,AGBL4,BEND5,BTF3L4,C1orf123,C1orf185,CC2D1B,CDCP2,CDKN2C,CMPK1,COA7,CPT2,CYB5RL,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DIO1,DMRTA2,DMRTB1,ECHDC2,EFCAB14,ELAVL4,EPS15,FAF1,FAM159A,FOXD2,FOXE3,GLIS1,GPX7,HSPB11,KTI12,LDLRAD1,LRP8,LRRC42,MAGOH,MRPL37,NDC1,NRD1,ORC1,OSBPL9,PDZK1IP1,PODN,PRPF38A,RAB3B,RNF11,SCP2,SLC1A7,SLC5A9,SPATA6,SSBP3,STIL,TAL1,TCEANC2,TMEM59,TRABD2B,TTC39A,TXNDC12,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AG.3611.01A	1	47173571	67160985	1016	0.0664	NEUTRAL	NA	114	Too-Many
TCGA.AA.3930.01A	1	47181956	52698817	294	-0.3175	NEUTRAL	NA	32	"AGBL4,BEND5,BTF3L4,C1orf185,CDKN2C,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMRTA2,EFCAB14,ELAVL4,EPS15,FAF1,FOXD2,FOXE3,KTI12,NRD1,OSBPL9,PDZK1IP1,RAB3B,RNF11,SLC5A9,SPATA6,STIL,TAL1,TRABD2B,TTC39A,TXNDC12,ZFYVE9"
TCGA.AA.3982	1	47264204	48536797	430	0.2596	NEUTRAL	NA	12	"CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,FOXD2,FOXE3,PDZK1IP1,STIL,TAL1,TRABD2B"
TCGA.AA.A01Q.01A	1	47264732	53537157	375	0.238	NEUTRAL	NA	43	"AGBL4,BEND5,BTF3L4,C1orf185,CC2D1B,CDKN2C,CMPK1,COA7,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMRTA2,ECHDC2,ELAVL4,EPS15,FAF1,FAM159A,FOXD2,FOXE3,GPX7,KTI12,NRD1,ORC1,OSBPL9,PDZK1IP1,PODN,PRPF38A,RAB3B,RNF11,SCP2,SLC5A9,SPATA6,STIL,TAL1,TRABD2B,TTC39A,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.CM.4752	1	47404865	53344975	1255	-0.3349	NEUTRAL	NA	39	"AGBL4,BEND5,BTF3L4,C1orf185,CC2D1B,CDKN2C,CMPK1,COA7,CYP4A11,CYP4A22,CYP4X1,CYP4Z1,DMRTA2,ELAVL4,EPS15,FAF1,FAM159A,FOXD2,FOXE3,GPX7,KTI12,NRD1,ORC1,OSBPL9,PDZK1IP1,PRPF38A,RAB3B,RNF11,SLC5A9,SPATA6,STIL,TAL1,TRABD2B,TTC39A,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.CK.5914.01A	1	47489453	47504964	7	-0.2711	NEUTRAL	NA	1	CYP4X1
TCGA.AG.3909.01A	1	47495611	47501456	4	-0.3853	NEUTRAL	NA	1	CYP4X1
TCGA.AA.A00N.01A	1	47495611	47504964	6	-0.2332	NEUTRAL	NA	1	CYP4X1
TCGA.AA.A010.01A	1	47501456	47603120	18	-0.0267	NEUTRAL	NA	3	"CYP4A22,CYP4X1,CYP4Z1"
TCGA.AG.3909.01A	1	47504292	47583411	16	0.1631	NEUTRAL	NA	2	"CYP4X1,CYP4Z1"
TCGA.AA.3862.01A	1	47611493	52227492	178	-0.3922	NEUTRAL	NA	21	"AGBL4,BEND5,C1orf185,CDKN2C,CMPK1,CYP4A22,DMRTA2,ELAVL4,EPS15,FAF1,FOXD2,FOXE3,OSBPL9,PDZK1IP1,RNF11,SLC5A9,SPATA6,STIL,TAL1,TRABD2B,TTC39A"
TCGA.AG.3909.01A	1	47649583	47903796	28	0.0036	NEUTRAL	NA	6	"CMPK1,FOXD2,FOXE3,PDZK1IP1,STIL,TAL1"
TCGA.CK.5914.01A	1	47685375	47737732	7	0.2383	NEUTRAL	NA	2	"STIL,TAL1"
TCGA.AA.A01C.01A	1	47685375	47767211	15	-0.2946	NEUTRAL	NA	2	"STIL,TAL1"
TCGA.AA.A00N.01A	1	47685375	47905677	27	-0.2515	NEUTRAL	NA	5	"CMPK1,FOXD2,FOXE3,STIL,TAL1"
TCGA.AA.A00D.01A	1	47748010	47903796	18	-0.3002	NEUTRAL	NA	4	"CMPK1,FOXD2,FOXE3,STIL"
TCGA.DM.A0XF	1	48320722	85858122	12278	-0.5049	NEUTRAL	NA	171	Too-Many
TCGA.AG.A01W.01A	1	48475888	51474966	72	-0.3277	NEUTRAL	NA	8	"AGBL4,BEND5,CDKN2C,DMRTA2,ELAVL4,FAF1,SLC5A9,SPATA6"
TCGA.AA.3811	1	48479074	52798032	781	-0.349	NEUTRAL	NA	19	"AGBL4,BEND5,BTF3L4,C1orf185,CDKN2C,DMRTA2,ELAVL4,EPS15,FAF1,KTI12,NRD1,OSBPL9,RAB3B,RNF11,SLC5A9,SPATA6,TTC39A,TXNDC12,ZFYVE9"
TCGA.AA.3844	1	48484104	48568671	50	0.1208	NEUTRAL	NA	0	None
TCGA.AA.3982	1	48543157	51468551	586	-0.2358	NEUTRAL	NA	8	"AGBL4,BEND5,CDKN2C,DMRTA2,ELAVL4,FAF1,SLC5A9,SPATA6"
TCGA.AA.3844	1	48570465	52334046	659	-0.249	NEUTRAL	NA	14	"AGBL4,BEND5,C1orf185,CDKN2C,DMRTA2,ELAVL4,EPS15,FAF1,NRD1,OSBPL9,RNF11,SLC5A9,SPATA6,TTC39A"
TCGA.AA.3850	1	48581839	51449574	571	-0.29945	NEUTRAL	NA	8	"AGBL4,BEND5,CDKN2C,DMRTA2,ELAVL4,FAF1,SLC5A9,SPATA6"
TCGA.AA.3941	1	48590385	50697069	453	-0.3056	NEUTRAL	NA	5	"AGBL4,BEND5,ELAVL4,SLC5A9,SPATA6"
TCGA.AA.A01C.01A	1	48688367	48697606	7	-0.2349	NEUTRAL	NA	1	SLC5A9
TCGA.AA.A01C.01A	1	48697999	51061741	51	0.0257	NEUTRAL	NA	7	"AGBL4,BEND5,DMRTA2,ELAVL4,FAF1,SLC5A9,SPATA6"
TCGA.AG.3909.01A	1	48764353	48825211	4	-0.1186	NEUTRAL	NA	1	SPATA6
TCGA.CK.5914.01A	1	48764353	52442515	180	0.2309	NEUTRAL	NA	14	"AGBL4,BEND5,C1orf185,CDKN2C,DMRTA2,ELAVL4,EPS15,FAF1,NRD1,OSBPL9,RAB3B,RNF11,SPATA6,TTC39A"
TCGA.AG.4015	1	48810111	49319166	197	-0.0278	NEUTRAL	NA	3	"AGBL4,BEND5,SPATA6"
TCGA.AA.A00D.01A	1	48821325	49052534	13	-0.0559	NEUTRAL	NA	2	"AGBL4,SPATA6"
TCGA.AA.A00N.01A	1	48877084	52442515	172	0.3483	NEUTRAL	NA	14	"AGBL4,BEND5,C1orf185,CDKN2C,DMRTA2,ELAVL4,EPS15,FAF1,NRD1,OSBPL9,RAB3B,RNF11,SPATA6,TTC39A"
TCGA.AA.A010.01A	1	48918616	51323559	54	-0.0191	NEUTRAL	NA	6	"AGBL4,BEND5,DMRTA2,ELAVL4,FAF1,SPATA6"
TCGA.AD.6890	1	48975445	49838006	284	-0.2051	NEUTRAL	NA	2	"AGBL4,BEND5"
TCGA.AG.A008.01A	1	49052534	49193520	6	-0.3712	NEUTRAL	NA	2	"AGBL4,BEND5"
TCGA.AA.A02Y	1	49172140	144896318	22583	0.0019	NEUTRAL	NA	407	Too-Many
TCGA.AG.A008.01A	1	49201900	68942563	1199	0.0858	NEUTRAL	NA	114	Too-Many
TCGA.DM.A1HB	1	49300787	101833754	16329	-0.0163	NEUTRAL	NA	251	Too-Many
TCGA.AY.5543	1	49310058	49666596	95	-0.0952	NEUTRAL	NA	1	AGBL4
TCGA.AA.3842	1	49315865	249198691	56700	-0.1725	NEUTRAL	NA	1345	Too-Many
TCGA.AG.4015	1	49320831	53765418	704	-0.4059	NEUTRAL	NA	33	"AGBL4,BTF3L4,C1orf123,C1orf185,CC2D1B,CDKN2C,COA7,CPT2,DMRTA2,ECHDC2,ELAVL4,EPS15,FAF1,FAM159A,GPX7,KTI12,LRP8,MAGOH,NRD1,ORC1,OSBPL9,PODN,PRPF38A,RAB3B,RNF11,SCP2,SLC1A7,TTC39A,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.EI.6881	1	49335329	249198691	56593	0.0247	NEUTRAL	NA	1345	Too-Many
TCGA.DM.A28H	1	49352724	49655429	71	0.0509	NEUTRAL	NA	1	AGBL4
TCGA.A6.2683	1	49407396	145004742	22495	-0.3282	NEUTRAL	NA	406	Too-Many
TCGA.A6.2685	1	49429424	64356557	4929	-0.3047	NEUTRAL	NA	88	"ACOT11,AGBL4,ALG6,ANGPTL3,ATG4C,BSND,BTF3L4,C1orf123,C1orf168,C1orf177,C1orf185,C1orf87,C8A,C8B,CC2D1B,CDCP2,CDKN2C,COA7,CPT2,CYB5RL,CYP2J2,DAB1,DHCR24,DIO1,DMRTA2,DMRTB1,DOCK7,ECHDC2,EFCAB7,ELAVL4,EPS15,FAF1,FAM151A,FAM159A,FGGY,FOXD3,GLIS1,GPX7,HOOK1,HSPB11,INADL,ITGB3BP,JUN,KANK4,KTI12,L1TD1,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,MYSM1,NDC1,NFIA,NRD1,OMA1,ORC1,OSBPL9,PARS2,PCSK9,PGM1,PODN,PPAP2B,PRKAA2,PRPF38A,RAB3B,RNF11,ROR1,SCP2,SLC1A7,SSBP3,TACSTD2,TCEANC2,TM2D1,TMEM59,TMEM61,TTC22,TTC39A,TTC4,TXNDC12,USP1,USP24,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AD.6965	1	49431908	144873326	22432	-0.2723	NEUTRAL	NA	406	Too-Many
TCGA.DC.4745	1	49467061	249198691	56688	-0.0318	NEUTRAL	NA	1345	Too-Many
TCGA.A6.2686	1	49468024	119246933	21986	-0.0064	NEUTRAL	NA	383	Too-Many
TCGA.D5.6535	1	49566200	120586191	22443	-0.3595	NEUTRAL	NA	395	Too-Many
TCGA.A6.6138	1	49573779	150808888	23042	-0.1688	NEUTRAL	NA	477	Too-Many
TCGA.AA.3488	1	49787195	145013753	22441	-0.4564	NEUTRAL	NA	406	Too-Many
TCGA.AY.5543	1	49831379	51137379	175	-0.0106	NEUTRAL	NA	4	"AGBL4,DMRTA2,ELAVL4,FAF1"
TCGA.AD.6890	1	49847860	53723189	584	0.1466	NEUTRAL	NA	33	"AGBL4,BTF3L4,C1orf123,C1orf185,CC2D1B,CDKN2C,COA7,CPT2,DMRTA2,ECHDC2,ELAVL4,EPS15,FAF1,FAM159A,GPX7,KTI12,LRP8,MAGOH,NRD1,ORC1,OSBPL9,PODN,PRPF38A,RAB3B,RNF11,SCP2,SLC1A7,TTC39A,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.G4.6586	1	49847860	249198691	56636	0.0018	NEUTRAL	NA	1345	Too-Many
TCGA.AA.3870	1	49917083	58232508	2517	0.0231	NEUTRAL	NA	65	"ACOT11,AGBL4,BSND,BTF3L4,C1orf123,C1orf168,C1orf177,C1orf185,C8A,C8B,CC2D1B,CDCP2,CDKN2C,COA7,CPT2,CYB5RL,DAB1,DHCR24,DIO1,DMRTA2,DMRTB1,ECHDC2,ELAVL4,EPS15,FAF1,FAM151A,FAM159A,GLIS1,GPX7,HSPB11,KTI12,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,NRD1,ORC1,OSBPL9,PARS2,PCSK9,PODN,PPAP2B,PRKAA2,PRPF38A,RAB3B,RNF11,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC39A,TTC4,TXNDC12,USP24,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.D5.6531	1	49954700	249198691	56592	-0.2051	NEUTRAL	NA	1345	Too-Many
TCGA.A6.6653	1	50023955	232823162	50510	0.0027	NEUTRAL	NA	1233	Too-Many
TCGA.DM.A28H	1	50086217	50872672	123	0.3778	NEUTRAL	NA	2	"AGBL4,ELAVL4"
TCGA.DM.A28F	1	50185074	116481397	21046	-0.0232	NEUTRAL	NA	366	Too-Many
TCGA.A6.4105	1	50366481	118181749	21651	-0.3283	NEUTRAL	NA	380	Too-Many
TCGA.SS.A7HO	1	50426541	249198691	56585	-0.2953	NEUTRAL	NA	1345	Too-Many
TCGA.AA.3941	1	50702053	53494878	400	0.3582	NEUTRAL	NA	25	"BTF3L4,C1orf185,CC2D1B,CDKN2C,COA7,DMRTA2,ECHDC2,EPS15,FAF1,FAM159A,GPX7,KTI12,NRD1,ORC1,OSBPL9,PRPF38A,RAB3B,RNF11,SCP2,TTC39A,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.DM.A28H	1	50906365	56490777	1542	0.0224	NEUTRAL	NA	56	"ACOT11,BSND,BTF3L4,C1orf123,C1orf177,C1orf185,CC2D1B,CDCP2,CDKN2C,COA7,CPT2,CYB5RL,DHCR24,DIO1,DMRTB1,ECHDC2,EPS15,FAF1,FAM151A,FAM159A,GLIS1,GPX7,HSPB11,KTI12,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,NRD1,ORC1,OSBPL9,PARS2,PCSK9,PODN,PRPF38A,RAB3B,RNF11,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC39A,TTC4,TXNDC12,USP24,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AG.3909.01A	1	51032702	51755637	21	-0.159	NEUTRAL	NA	5	"C1orf185,CDKN2C,FAF1,RNF11,TTC39A"
TCGA.AA.A01C.01A	1	51121056	55607242	525	-0.3126	NEUTRAL	NA	56	"ACOT11,BSND,BTF3L4,C1orf123,C1orf177,C1orf185,CC2D1B,CDCP2,CDKN2C,COA7,CPT2,CYB5RL,DHCR24,DIO1,DMRTB1,ECHDC2,EPS15,FAF1,FAM151A,FAM159A,GLIS1,GPX7,HSPB11,KTI12,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,NRD1,ORC1,OSBPL9,PARS2,PCSK9,PODN,PRPF38A,RAB3B,RNF11,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC39A,TTC4,TXNDC12,USP24,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AY.5543	1	51188593	204284891	39847	0.0075	NEUTRAL	NA	1032	Too-Many
TCGA.AA.3850	1	51468551	55182299	876	0.35235	NEUTRAL	NA	46	"ACOT11,BTF3L4,C1orf123,C1orf185,CC2D1B,CDCP2,COA7,CPT2,CYB5RL,DIO1,DMRTB1,ECHDC2,EPS15,FAM151A,FAM159A,GLIS1,GPX7,HSPB11,KTI12,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,NRD1,ORC1,OSBPL9,PODN,PRPF38A,RAB3B,RNF11,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,TTC39A,TTC4,TXNDC12,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AA.3549	1	51468551	65848074	5217	0.0228	NEUTRAL	NA	89	"ACOT11,AK4,ALG6,ANGPTL3,ATG4C,BSND,BTF3L4,C1orf123,C1orf168,C1orf177,C1orf185,C1orf87,C8A,C8B,CACHD1,CC2D1B,CDCP2,COA7,CPT2,CYB5RL,CYP2J2,DAB1,DHCR24,DIO1,DMRTB1,DNAJC6,DOCK7,ECHDC2,EFCAB7,EPS15,FAM151A,FAM159A,FGGY,FOXD3,GLIS1,GPX7,HOOK1,HSPB11,INADL,ITGB3BP,JAK1,JUN,KANK4,KTI12,L1TD1,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,MYSM1,NDC1,NFIA,NRD1,OMA1,ORC1,OSBPL9,PARS2,PCSK9,PGM1,PODN,PPAP2B,PRKAA2,PRPF38A,RAB3B,RAVER2,RNF11,ROR1,SCP2,SLC1A7,SSBP3,TACSTD2,TCEANC2,TM2D1,TMEM59,TMEM61,TTC22,TTC39A,TTC4,TXNDC12,UBE2U,USP1,USP24,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AA.3982	1	51468753	53494878	282	0.2555	NEUTRAL	NA	22	"BTF3L4,C1orf185,CC2D1B,COA7,ECHDC2,EPS15,FAM159A,GPX7,KTI12,NRD1,ORC1,OSBPL9,PRPF38A,RAB3B,RNF11,SCP2,TTC39A,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AA.A010.01A	1	51567827	51768707	17	-0.0528	NEUTRAL	NA	3	"C1orf185,RNF11,TTC39A"
TCGA.DY.A1DG	1	51677038	74299987	7781	-0.4878	NEUTRAL	NA	116	Too-Many
TCGA.AG.A01W.01A	1	51678569	52072261	63	-0.098	NEUTRAL	NA	3	"EPS15,RNF11,TTC39A"
TCGA.AF.3914.01A	1	51702377	52861686	162	0.0176	NEUTRAL	NA	12	"BTF3L4,CC2D1B,EPS15,KTI12,NRD1,ORC1,OSBPL9,RAB3B,RNF11,TTC39A,TXNDC12,ZFYVE9"
TCGA.AG.3909.01A	1	51777750	52135048	30	0.0958	NEUTRAL	NA	3	"EPS15,OSBPL9,TTC39A"
TCGA.AA.A010.01A	1	51875165	52305859	68	0.14	NEUTRAL	NA	3	"EPS15,NRD1,OSBPL9"
TCGA.AG.A01W.01A	1	52074356	53312802	170	-0.4097	NEUTRAL	NA	16	"BTF3L4,CC2D1B,COA7,FAM159A,GPX7,KTI12,NRD1,ORC1,OSBPL9,PRPF38A,RAB3B,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AG.3909.01A	1	52226311	52285407	35	0.0135	NEUTRAL	NA	2	"NRD1,OSBPL9"
TCGA.AA.3862.01A	1	52231447	57002585	533	0.0891	NEUTRAL	NA	51	"ACOT11,BSND,BTF3L4,C1orf123,C1orf177,CC2D1B,CDCP2,COA7,CPT2,CYB5RL,DHCR24,DIO1,DMRTB1,ECHDC2,FAM151A,FAM159A,GLIS1,GPX7,HSPB11,KTI12,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,NRD1,ORC1,OSBPL9,PARS2,PCSK9,PODN,PPAP2B,PRPF38A,RAB3B,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC4,TXNDC12,USP24,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.A6.3808.01A	1	52260113	55060177	360	-0.3751	NEUTRAL	NA	38	"ACOT11,BTF3L4,C1orf123,CC2D1B,CDCP2,COA7,CPT2,CYB5RL,DIO1,DMRTB1,ECHDC2,FAM159A,GLIS1,GPX7,HSPB11,KTI12,LDLRAD1,LRP8,LRRC42,MAGOH,MRPL37,NDC1,NRD1,ORC1,PODN,PRPF38A,RAB3B,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,TXNDC12,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AA.3844	1	52336136	53494878	198	0.1438	NEUTRAL	NA	17	"BTF3L4,CC2D1B,COA7,ECHDC2,FAM159A,GPX7,KTI12,NRD1,ORC1,PRPF38A,RAB3B,SCP2,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AG.3909.01A	1	52343919	52442515	5	0.1539	NEUTRAL	NA	2	"NRD1,RAB3B"
TCGA.AA.A00F.01A	1	52486548	52548960	11	0.1285	NEUTRAL	NA	3	"BTF3L4,KTI12,TXNDC12"
TCGA.AA.A00D.01A	1	52492882	52551727	9	0.1214	NEUTRAL	NA	3	"BTF3L4,KTI12,TXNDC12"
TCGA.AA.A00N.01A	1	52548960	52698817	4	-0.0841	NEUTRAL	NA	2	"BTF3L4,ZFYVE9"
TCGA.AG.3909.01A	1	52548960	52825694	32	0.057	NEUTRAL	NA	3	"BTF3L4,CC2D1B,ZFYVE9"
TCGA.CK.5914.01A	1	52548960	52878144	59	0.0198	NEUTRAL	NA	5	"BTF3L4,CC2D1B,ORC1,PRPF38A,ZFYVE9"
TCGA.AA.A00F.01A	1	52551727	53607948	151	-0.2705	NEUTRAL	NA	15	"BTF3L4,CC2D1B,COA7,ECHDC2,FAM159A,GPX7,ORC1,PODN,PRPF38A,SCP2,SLC1A7,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AA.A00D.01A	1	52552306	55064922	274	-0.3867	NEUTRAL	NA	34	"ACOT11,BTF3L4,C1orf123,CC2D1B,CDCP2,COA7,CPT2,CYB5RL,DIO1,DMRTB1,ECHDC2,FAM159A,GLIS1,GPX7,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,MRPL37,NDC1,ORC1,PODN,PRPF38A,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AA.3811	1	52801060	55536002	884	0.1347	NEUTRAL	NA	44	"ACOT11,BSND,C1orf123,C1orf177,CC2D1B,CDCP2,COA7,CPT2,CYB5RL,DHCR24,DIO1,DMRTB1,ECHDC2,FAM151A,FAM159A,GLIS1,GPX7,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,ORC1,PARS2,PCSK9,PODN,PRPF38A,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC4,USP24,YIPF1,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.AA.A00N.01A	1	52805751	52854838	31	-0.3261	NEUTRAL	NA	3	"CC2D1B,ORC1,ZFYVE9"
TCGA.AA.A01F.01A	1	52824652	53516247	103	-0.2832	NEUTRAL	NA	11	"CC2D1B,COA7,ECHDC2,FAM159A,GPX7,ORC1,PRPF38A,SCP2,ZCCHC11,ZYG11A,ZYG11B"
TCGA.AA.3930.01A	1	52825694	53540213	122	-0.251	NEUTRAL	NA	12	"CC2D1B,COA7,ECHDC2,FAM159A,GPX7,ORC1,PODN,PRPF38A,SCP2,ZCCHC11,ZYG11A,ZYG11B"
TCGA.AG.3909.01A	1	52849043	52874199	15	-0.0543	NEUTRAL	NA	2	"ORC1,PRPF38A"
TCGA.AG.3909.01A	1	52876733	52896663	9	0.3491	NEUTRAL	NA	2	"PRPF38A,ZCCHC11"
TCGA.AF.3914.01A	1	52889544	53504540	69	0.0504	NEUTRAL	NA	8	"COA7,ECHDC2,FAM159A,GPX7,SCP2,ZCCHC11,ZYG11A,ZYG11B"
TCGA.AG.3909.01A	1	52900987	52991197	24	-0.005	NEUTRAL	NA	1	ZCCHC11
TCGA.CK.5914.01A	1	52900987	53308499	47	-0.0372	NEUTRAL	NA	6	"COA7,FAM159A,GPX7,ZCCHC11,ZYG11A,ZYG11B"
TCGA.AA.A00N.01A	1	52991197	53222123	11	-0.2105	NEUTRAL	NA	5	"COA7,FAM159A,GPX7,ZCCHC11,ZYG11B"
TCGA.AG.3909.01A	1	53072349	53222123	9	-0.4137	NEUTRAL	NA	4	"COA7,FAM159A,GPX7,ZYG11B"
TCGA.AA.A010.01A	1	53122430	53364773	31	0.0237	NEUTRAL	NA	5	"COA7,ECHDC2,FAM159A,ZYG11A,ZYG11B"
TCGA.AG.3909.01A	1	53236675	53513471	34	0.1119	NEUTRAL	NA	4	"ECHDC2,SCP2,ZYG11A,ZYG11B"
TCGA.F5.6812	1	53251859	120521759	21914	-0.4138	NEUTRAL	NA	372	Too-Many
TCGA.A6.3810.01A	1	53320089	53352576	10	-0.4803	NEUTRAL	NA	1	ZYG11A
TCGA.AG.A01W.01A	1	53341559	54066209	64	-0.2942	NEUTRAL	NA	11	"C1orf123,CPT2,DMRTB1,ECHDC2,GLIS1,LRP8,MAGOH,PODN,SCP2,SLC1A7,ZYG11A"
TCGA.CK.5914.01A	1	53351439	53358407	3	-0.3241	NEUTRAL	NA	1	ZYG11A
TCGA.A6.3810.01A	1	53358407	152287748	4787	-9.00E-04	NEUTRAL	NA	498	Too-Many
TCGA.CM.4752	1	53361927	56531888	1226	0.1434	NEUTRAL	NA	34	"ACOT11,BSND,C1orf123,C1orf177,CDCP2,CPT2,CYB5RL,DHCR24,DIO1,DMRTB1,ECHDC2,FAM151A,GLIS1,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,PARS2,PCSK9,PODN,SCP2,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC4,USP24,YIPF1"
TCGA.CK.5914.01A	1	53362131	53493604	23	0.2599	NEUTRAL	NA	2	"ECHDC2,SCP2"
TCGA.AA.A010.01A	1	53407415	53703978	55	0.3286	NEUTRAL	NA	6	"C1orf123,CPT2,MAGOH,PODN,SCP2,SLC1A7"
TCGA.CK.5914.01A	1	53504540	53607948	26	-0.4071	NEUTRAL	NA	3	"PODN,SCP2,SLC1A7"
TCGA.AA.3941	1	53510974	53516382	10	-0.3046	NEUTRAL	NA	1	SCP2
TCGA.AA.3982	1	53510974	53518048	12	-0.2775	NEUTRAL	NA	1	SCP2
TCGA.AF.3914.01A	1	53513471	53720727	41	0.3502	NEUTRAL	NA	7	"C1orf123,CPT2,LRP8,MAGOH,PODN,SCP2,SLC1A7"
TCGA.AA.3867	1	53514496	67031946	5394	-0.4669	NEUTRAL	NA	72	"ACOT11,AK4,ALG6,ANGPTL3,ATG4C,BSND,C1orf123,C1orf168,C1orf177,C1orf87,C8A,C8B,CACHD1,CDCP2,CPT2,CYB5RL,CYP2J2,DAB1,DHCR24,DIO1,DMRTB1,DNAJC6,DOCK7,EFCAB7,FAM151A,FGGY,FOXD3,GLIS1,HOOK1,HSPB11,INADL,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LDLRAD1,LEPR,LEPROT,LRP8,LRRC42,MAGOH,MROH7,MRPL37,MYSM1,NDC1,NFIA,OMA1,PARS2,PCSK9,PDE4B,PGM1,PODN,PPAP2B,PRKAA2,RAVER2,ROR1,SCP2,SGIP1,SLC1A7,SSBP3,TACSTD2,TCEANC2,TM2D1,TMEM59,TMEM61,TTC22,TTC4,UBE2U,USP1,USP24,YIPF1"
TCGA.AA.3844	1	53517996	55537197	747	0.2159	NEUTRAL	NA	32	"ACOT11,BSND,C1orf123,C1orf177,CDCP2,CPT2,CYB5RL,DHCR24,DIO1,DMRTB1,FAM151A,GLIS1,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,PARS2,PCSK9,PODN,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC4,USP24,YIPF1"
TCGA.AA.A01F.01A	1	53527837	53559096	16	0.0336	NEUTRAL	NA	2	"PODN,SLC1A7"
TCGA.AA.3982	1	53530022	55537197	743	0.3057	NEUTRAL	NA	32	"ACOT11,BSND,C1orf123,C1orf177,CDCP2,CPT2,CYB5RL,DHCR24,DIO1,DMRTB1,FAM151A,GLIS1,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,PARS2,PCSK9,PODN,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC4,USP24,YIPF1"
TCGA.AA.A01Q.01A	1	53540213	53932205	56	-0.2342	NEUTRAL	NA	7	"C1orf123,CPT2,DMRTB1,LRP8,MAGOH,PODN,SLC1A7"
TCGA.AA.A00N.01A	1	53553633	53662568	13	0.0659	NEUTRAL	NA	2	"CPT2,SLC1A7"
TCGA.AA.3980.01A	1	53558187	55085487	169	-0.0767	NEUTRAL	NA	21	"ACOT11,C1orf123,CDCP2,CPT2,CYB5RL,DIO1,DMRTB1,FAM151A,GLIS1,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,MRPL37,NDC1,SLC1A7,SSBP3,TCEANC2,TMEM59,YIPF1"
TCGA.AG.3909.01A	1	53559096	53662568	7	0.1989	NEUTRAL	NA	2	"CPT2,SLC1A7"
TCGA.AG.3906.01A	1	53568970	53716332	24	-0.1022	NEUTRAL	NA	5	"C1orf123,CPT2,LRP8,MAGOH,SLC1A7"
TCGA.AA.3930.01A	1	53568970	53732098	34	-0.0943	NEUTRAL	NA	5	"C1orf123,CPT2,LRP8,MAGOH,SLC1A7"
TCGA.AA.3939.01A	1	53568970	55253656	207	-0.0932	NEUTRAL	NA	25	"ACOT11,C1orf123,CDCP2,CPT2,CYB5RL,DIO1,DMRTB1,FAM151A,GLIS1,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,PARS2,SLC1A7,SSBP3,TCEANC2,TMEM59,TTC22,TTC4,YIPF1"
TCGA.AA.A01F.01A	1	53568970	75672240	928	-0.3418	NEUTRAL	NA	103	Too-Many
TCGA.AG.3891.01A	1	53580381	65296485	681	0.0104	NEUTRAL	NA	63	"ACOT11,ALG6,ANGPTL3,ATG4C,BSND,C1orf123,C1orf168,C1orf177,C1orf87,C8A,C8B,CACHD1,CDCP2,CPT2,CYB5RL,CYP2J2,DAB1,DHCR24,DIO1,DMRTB1,DOCK7,EFCAB7,FAM151A,FGGY,FOXD3,GLIS1,HOOK1,HSPB11,INADL,ITGB3BP,JUN,KANK4,L1TD1,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,MYSM1,NDC1,NFIA,OMA1,PARS2,PCSK9,PGM1,PPAP2B,PRKAA2,RAVER2,ROR1,SLC1A7,SSBP3,TACSTD2,TCEANC2,TM2D1,TMEM59,TMEM61,TTC22,TTC4,UBE2U,USP1,USP24,YIPF1"
TCGA.AA.A00F.01A	1	53666344	53701188	15	0.1386	NEUTRAL	NA	3	"C1orf123,CPT2,MAGOH"
TCGA.AG.3909.01A	1	53703978	53716332	4	-0.3933	NEUTRAL	NA	2	"LRP8,MAGOH"
TCGA.AA.A00N.01A	1	53703978	54514242	83	-0.2325	NEUTRAL	NA	11	"DIO1,DMRTB1,GLIS1,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,NDC1,TMEM59,YIPF1"
TCGA.AA.A00F.01A	1	53703978	62738834	377	-0.29	NEUTRAL	NA	47	"ACOT11,BSND,C1orf168,C1orf177,C1orf87,C8A,C8B,CDCP2,CYB5RL,CYP2J2,DAB1,DHCR24,DIO1,DMRTB1,FAM151A,FGGY,GLIS1,HOOK1,HSPB11,INADL,JUN,KANK4,L1TD1,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,MYSM1,NDC1,NFIA,OMA1,PARS2,PCSK9,PPAP2B,PRKAA2,SSBP3,TACSTD2,TCEANC2,TM2D1,TMEM59,TMEM61,TTC22,TTC4,USP24,YIPF1"
TCGA.AG.3909.01A	1	53720727	54266328	29	0.165	NEUTRAL	NA	4	"DMRTB1,GLIS1,LRP8,NDC1"
TCGA.AF.3914.01A	1	53722882	53980249	18	-0.4903	NEUTRAL	NA	3	"DMRTB1,GLIS1,LRP8"
TCGA.AD.6890	1	53723348	174787723	30519	-0.1625	NEUTRAL	NA	846	Too-Many
TCGA.CK.5914.01A	1	53732098	54534402	76	-0.2773	NEUTRAL	NA	11	"DIO1,DMRTB1,GLIS1,HSPB11,LDLRAD1,LRP8,LRRC42,NDC1,TCEANC2,TMEM59,YIPF1"
TCGA.AG.4015	1	53771201	53881253	57	0.0623	NEUTRAL	NA	1	LRP8
TCGA.AG.4015	1	53881607	58448883	1994	-0.4193	NEUTRAL	NA	32	"ACOT11,BSND,C1orf168,C1orf177,C8A,C8B,CDCP2,CYB5RL,DAB1,DHCR24,DIO1,DMRTB1,FAM151A,GLIS1,HSPB11,LDLRAD1,LRRC42,MROH7,MRPL37,NDC1,PARS2,PCSK9,PPAP2B,PRKAA2,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC4,USP24,YIPF1"
TCGA.AA.A01Q.01A	1	53972244	67507864	636	0.039	NEUTRAL	NA	69	"ACOT11,AK4,ALG6,ANGPTL3,ATG4C,BSND,C1orf168,C1orf177,C1orf87,C8A,C8B,CACHD1,CDCP2,CYB5RL,CYP2J2,DAB1,DHCR24,DIO1,DNAJC6,DOCK7,EFCAB7,FAM151A,FGGY,FOXD3,GLIS1,HOOK1,HSPB11,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LDLRAD1,LEPR,LEPROT,LRRC42,MIER1,MROH7,MRPL37,MYSM1,NDC1,NFIA,OMA1,PARS2,PCSK9,PDE4B,PGM1,PPAP2B,PRKAA2,RAVER2,ROR1,SGIP1,SLC35D1,SSBP3,TACSTD2,TCEANC2,TCTEX1D1,TM2D1,TMEM59,TMEM61,TTC22,TTC4,UBE2U,USP1,USP24,WDR78,YIPF1"
TCGA.AF.3914.01A	1	53995437	54675567	72	0.0281	NEUTRAL	NA	12	"CDCP2,CYB5RL,DIO1,GLIS1,HSPB11,LDLRAD1,LRRC42,MRPL37,NDC1,TCEANC2,TMEM59,YIPF1"
TCGA.AG.3906.01A	1	54059733	54665905	69	-0.0051	NEUTRAL	NA	12	"CDCP2,CYB5RL,DIO1,GLIS1,HSPB11,LDLRAD1,LRRC42,MRPL37,NDC1,TCEANC2,TMEM59,YIPF1"
TCGA.AG.3909.01A	1	54269540	54512893	46	-0.3591	NEUTRAL	NA	7	"DIO1,HSPB11,LDLRAD1,LRRC42,NDC1,TMEM59,YIPF1"
TCGA.AA.3930.01A	1	54269540	55567210	211	-0.1884	NEUTRAL	NA	24	"ACOT11,BSND,C1orf177,CDCP2,CYB5RL,DHCR24,DIO1,FAM151A,HSPB11,LDLRAD1,LRRC42,MROH7,MRPL37,NDC1,PARS2,PCSK9,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC4,USP24,YIPF1"
TCGA.AA.3531	1	54315631	55197148	274	0.0377	NEUTRAL	NA	15	"ACOT11,CDCP2,CYB5RL,DIO1,FAM151A,HSPB11,LDLRAD1,LRRC42,MROH7,MRPL37,SSBP3,TCEANC2,TMEM59,TTC4,YIPF1"
TCGA.AG.3906.01A	1	54670664	54708844	12	0.3629	NEUTRAL	NA	2	"MRPL37,SSBP3"
TCGA.CK.5914.01A	1	54871577	55077239	20	0.1701	NEUTRAL	NA	3	"ACOT11,FAM151A,SSBP3"
TCGA.AF.3914.01A	1	55013913	109968847	2597	0.0251	NEUTRAL	NA	238	Too-Many
TCGA.AG.A01W.01A	1	55045215	56996895	130	-0.0634	NEUTRAL	NA	13	"ACOT11,BSND,C1orf177,DHCR24,FAM151A,MROH7,PARS2,PCSK9,PPAP2B,TMEM61,TTC22,TTC4,USP24"
TCGA.AG.3906.01A	1	55050301	71530697	872	-0.0533	NEUTRAL	NA	74	"ACOT11,AK4,ALG6,ANGPTL3,ANKRD13C,ATG4C,BSND,C1orf141,C1orf168,C1orf177,C1orf87,C8A,C8B,CACHD1,CTH,CYP2J2,DAB1,DEPDC1,DHCR24,DIRAS3,DNAJC6,DOCK7,EFCAB7,FAM151A,FGGY,FOXD3,GADD45A,GNG12,HHLA3,HOOK1,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,LRRC40,LRRC7,MIER1,MROH7,MYSM1,NFIA,OMA1,PARS2,PCSK9,PDE4B,PGM1,PPAP2B,PRKAA2,PTGER3,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SRSF11,TACSTD2,TCTEX1D1,TM2D1,TMEM61,TTC22,TTC4,UBE2U,USP1,USP24,WDR78,WLS,ZRANB2"
TCGA.AG.A00C.01A	1	55051443	55167711	40	-0.3201	NEUTRAL	NA	3	"ACOT11,FAM151A,MROH7"
TCGA.AA.3980.01A	1	55088920	55167711	20	0.3011	NEUTRAL	NA	3	"ACOT11,FAM151A,MROH7"
TCGA.A6.3808.01A	1	55096418	57173099	157	0.2088	NEUTRAL	NA	13	"ACOT11,BSND,C1orf177,DHCR24,MROH7,PARS2,PCSK9,PPAP2B,PRKAA2,TMEM61,TTC22,TTC4,USP24"
TCGA.AA.A00D.01A	1	55118552	55193973	7	-0.0056	NEUTRAL	NA	2	"MROH7,TTC4"
TCGA.AA.A00N.01A	1	55168254	55181535	5	-0.4964	NEUTRAL	NA	2	"MROH7,TTC4"
TCGA.AG.3909.01A	1	55168254	55181535	5	-0.0274	NEUTRAL	NA	2	"MROH7,TTC4"
TCGA.CK.5914.01A	1	55168254	55279470	29	-0.2891	NEUTRAL	NA	5	"C1orf177,MROH7,PARS2,TTC22,TTC4"
TCGA.AA.3980.01A	1	55168254	120935789	3671	-0.1499	NEUTRAL	NA	348	Too-Many
TCGA.AA.A010.01A	1	55186778	55307240	25	-0.2924	NEUTRAL	NA	4	"C1orf177,PARS2,TTC22,TTC4"
TCGA.AA.A00D.01A	1	55197110	55586222	48	-0.3961	NEUTRAL	NA	9	"BSND,C1orf177,DHCR24,PARS2,PCSK9,TMEM61,TTC22,TTC4,USP24"
TCGA.AA.A02H.01A	1	55273162	108690850	2285	-0.1767	NEUTRAL	NA	211	Too-Many
TCGA.AG.3909.01A	1	55280540	55341567	10	0.2242	NEUTRAL	NA	2	"C1orf177,DHCR24"
TCGA.AG.A00C.01A	1	55282623	62747129	307	-0.1216	NEUTRAL	NA	25	"BSND,C1orf168,C1orf177,C1orf87,C8A,C8B,CYP2J2,DAB1,DHCR24,FGGY,HOOK1,INADL,JUN,KANK4,L1TD1,MYSM1,NFIA,OMA1,PCSK9,PPAP2B,PRKAA2,TACSTD2,TM2D1,TMEM61,USP24"
TCGA.AG.4009.01A	1	55307240	94336197	1795	-0.0555	NEUTRAL	NA	165	Too-Many
TCGA.AA.3939.01A	1	55330929	55464853	10	0.075	NEUTRAL	NA	3	"BSND,DHCR24,TMEM61"
TCGA.AA.A00N.01A	1	55330929	55528993	25	-0.1475	NEUTRAL	NA	4	"BSND,DHCR24,PCSK9,TMEM61"
TCGA.A6.5661	1	55339085	184223707	33124	0.0175	NEUTRAL	NA	878	Too-Many
TCGA.CK.5914.01A	1	55341567	55538408	26	0.0623	NEUTRAL	NA	5	"BSND,DHCR24,PCSK9,TMEM61,USP24"
TCGA.AA.3939.01A	1	55470646	56989425	81	-0.4323	NEUTRAL	NA	4	"BSND,PCSK9,PPAP2B,USP24"
TCGA.AG.3885	1	55515736	249198691	55413	0.0078	NEUTRAL	NA	1288	Too-Many
TCGA.AG.3909.01A	1	55518285	55607242	48	-0.2455	NEUTRAL	NA	2	"PCSK9,USP24"
TCGA.AA.A02K.01A	1	55521639	65280361	495	-0.1291	NEUTRAL	NA	34	"ALG6,ANGPTL3,ATG4C,C1orf168,C1orf87,C8A,C8B,CACHD1,CYP2J2,DAB1,DOCK7,EFCAB7,FGGY,FOXD3,HOOK1,INADL,ITGB3BP,JUN,KANK4,L1TD1,MYSM1,NFIA,OMA1,PCSK9,PGM1,PPAP2B,PRKAA2,RAVER2,ROR1,TACSTD2,TM2D1,UBE2U,USP1,USP24"
TCGA.AG.A025.01A	1	55522982	145328371	3525	0.0284	NEUTRAL	NA	352	Too-Many
TCGA.AG.A01N.01A	1	55523668	120508948	3417	-0.1145	NEUTRAL	NA	338	Too-Many
TCGA.AA.3850	1	55532741	55934659	175	0.18565	NEUTRAL	NA	1	USP24
TCGA.AA.A010.01A	1	55534653	55567210	26	-0.4266	NEUTRAL	NA	1	USP24
TCGA.AA.3811	1	55537197	83829356	9769	-0.3603	NEUTRAL	NA	93	"ACADM,ADGRL2,ADGRL4,AK4,AK5,ALG6,ANGPTL3,ANKRD13C,ASB17,ATG4C,C1orf141,C1orf168,C1orf87,C8A,C8B,CACHD1,CRYZ,CTH,CYP2J2,DAB1,DEPDC1,DIRAS3,DNAJB4,DNAJC6,DOCK7,EFCAB7,ERICH3,FAM73A,FGGY,FOXD3,FPGT,FPGT-TNNI3K,FUBP1,GADD45A,GIPC2,GNG12,HHLA3,HOOK1,IFI44,IFI44L,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,LHX8,LRRC40,LRRC7,LRRIQ3,MIER1,MSH4,MYSM1,NEGR1,NEXN,NFIA,OMA1,PDE4B,PGM1,PIGK,PPAP2B,PRKAA2,PTGER3,PTGFR,RABGGTB,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TACSTD2,TCTEX1D1,TM2D1,TNNI3K,TYW3,UBE2U,USP1,USP24,USP33,WDR78,WLS,ZRANB2,ZZZ3"
TCGA.AA.3941	1	55552568	56061130	257	0.2325	NEUTRAL	NA	1	USP24
TCGA.AA.3982	1	55552568	66457243	4351	-0.0327	NEUTRAL	NA	39	"AK4,ALG6,ANGPTL3,ATG4C,C1orf168,C1orf87,C8A,C8B,CACHD1,CYP2J2,DAB1,DNAJC6,DOCK7,EFCAB7,FGGY,FOXD3,HOOK1,INADL,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,MYSM1,NFIA,OMA1,PDE4B,PGM1,PPAP2B,PRKAA2,RAVER2,ROR1,TACSTD2,TM2D1,UBE2U,USP1,USP24"
TCGA.AA.3844	1	55552635	66402423	4324	-0.1283	NEUTRAL	NA	39	"AK4,ALG6,ANGPTL3,ATG4C,C1orf168,C1orf87,C8A,C8B,CACHD1,CYP2J2,DAB1,DNAJC6,DOCK7,EFCAB7,FGGY,FOXD3,HOOK1,INADL,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,MYSM1,NFIA,OMA1,PDE4B,PGM1,PPAP2B,PRKAA2,RAVER2,ROR1,TACSTD2,TM2D1,UBE2U,USP1,USP24"
TCGA.CK.5914.01A	1	55569520	55598200	11	-0.4275	NEUTRAL	NA	1	USP24
TCGA.AA.A00D.01A	1	55589089	56989425	8	0.0652	NEUTRAL	NA	2	"PPAP2B,USP24"
TCGA.AA.A01C.01A	1	55608370	58996226	91	0.1608	NEUTRAL	NA	8	"C1orf168,C8A,C8B,DAB1,OMA1,PPAP2B,PRKAA2,USP24"
TCGA.AG.3909.01A	1	55608370	62747129	240	0.1093	NEUTRAL	NA	20	"C1orf168,C1orf87,C8A,C8B,CYP2J2,DAB1,FGGY,HOOK1,INADL,JUN,KANK4,L1TD1,MYSM1,NFIA,OMA1,PPAP2B,PRKAA2,TACSTD2,TM2D1,USP24"
TCGA.A6.2672	1	55742209	249198691	55102	0.0153	NEUTRAL	NA	1286	Too-Many
TCGA.AA.3850	1	55939993	56055847	76	0.08065	NEUTRAL	NA	0	None
TCGA.AY.A71X	1	55993009	55995342	4	-0.503	NEUTRAL	NA	0	None
TCGA.AY.A71X	1	55995468	177968196	30783	0	NEUTRAL	NA	829	Too-Many
TCGA.AA.3850	1	56057848	56741691	273	-0.50965	NEUTRAL	NA	0	None
TCGA.AA.3941	1	56063732	62114180	2563	-0.0652	NEUTRAL	NA	15	"C1orf168,C1orf87,C8A,C8B,CYP2J2,DAB1,FGGY,HOOK1,JUN,MYSM1,NFIA,OMA1,PPAP2B,PRKAA2,TACSTD2"
TCGA.CA.6719	1	56172573	56415500	94	-0.1193	NEUTRAL	NA	0	None
TCGA.CM.4752	1	56535751	75164234	6525	-0.3018	NEUTRAL	NA	68	"AK4,ALG6,ANGPTL3,ANKRD13C,ATG4C,C1orf141,C1orf168,C1orf87,C8A,C8B,CACHD1,CTH,CYP2J2,DAB1,DEPDC1,DIRAS3,DNAJC6,DOCK7,EFCAB7,ERICH3,FGGY,FOXD3,FPGT,FPGT-TNNI3K,GADD45A,GNG12,HHLA3,HOOK1,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,LRRC40,LRRC7,LRRIQ3,MIER1,MYSM1,NEGR1,NFIA,OMA1,PDE4B,PGM1,PPAP2B,PRKAA2,PTGER3,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SRSF11,TACSTD2,TCTEX1D1,TM2D1,TNNI3K,UBE2U,USP1,WDR78,WLS,ZRANB2"
TCGA.AA.3864	1	56559235	59122870	1286	-0.0295	NEUTRAL	NA	9	"C1orf168,C8A,C8B,DAB1,MYSM1,OMA1,PPAP2B,PRKAA2,TACSTD2"
TCGA.AA.3850	1	56748181	60597913	1752	-0.10985	NEUTRAL	NA	14	"C1orf168,C1orf87,C8A,C8B,CYP2J2,DAB1,FGGY,HOOK1,JUN,MYSM1,OMA1,PPAP2B,PRKAA2,TACSTD2"
TCGA.A6.A56B	1	56819150	73173905	5889	0.0011	NEUTRAL	NA	63	"AK4,ALG6,ANGPTL3,ANKRD13C,ATG4C,C1orf141,C1orf168,C1orf87,C8A,C8B,CACHD1,CTH,CYP2J2,DAB1,DEPDC1,DIRAS3,DNAJC6,DOCK7,EFCAB7,FGGY,FOXD3,GADD45A,GNG12,HHLA3,HOOK1,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,LRRC40,LRRC7,MIER1,MYSM1,NEGR1,NFIA,OMA1,PDE4B,PGM1,PPAP2B,PRKAA2,PTGER3,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SRSF11,TACSTD2,TCTEX1D1,TM2D1,UBE2U,USP1,WDR78,WLS,ZRANB2"
TCGA.AA.A010.01A	1	56962176	57173099	15	0.2094	NEUTRAL	NA	2	"PPAP2B,PRKAA2"
TCGA.AA.3939.01A	1	56989912	62516584	205	-0.1675	NEUTRAL	NA	17	"C1orf168,C1orf87,C8A,C8B,CYP2J2,DAB1,FGGY,HOOK1,INADL,JUN,MYSM1,NFIA,OMA1,PPAP2B,PRKAA2,TACSTD2,TM2D1"
TCGA.AG.A01W.01A	1	57006043	58719196	42	-0.5078	NEUTRAL	NA	6	"C1orf168,C8A,C8B,DAB1,PPAP2B,PRKAA2"
TCGA.AA.3862.01A	1	57044504	78338662	991	-0.2286	NEUTRAL	NA	83	"ACADM,AK4,AK5,ALG6,ANGPTL3,ANKRD13C,ASB17,ATG4C,C1orf141,C1orf168,C1orf87,C8A,C8B,CACHD1,CRYZ,CTH,CYP2J2,DAB1,DEPDC1,DIRAS3,DNAJC6,DOCK7,EFCAB7,ERICH3,FAM73A,FGGY,FOXD3,FPGT,FPGT-TNNI3K,GADD45A,GNG12,HHLA3,HOOK1,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,LHX8,LRRC40,LRRC7,LRRIQ3,MIER1,MSH4,MYSM1,NEGR1,NFIA,OMA1,PDE4B,PGM1,PIGK,PPAP2B,PRKAA2,PTGER3,RABGGTB,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TACSTD2,TCTEX1D1,TM2D1,TNNI3K,TYW3,UBE2U,USP1,USP33,WDR78,WLS,ZRANB2,ZZZ3"
TCGA.AA.3861.01A	1	57161561	60297762	108	-0.4989	NEUTRAL	NA	11	"C1orf168,C8A,C8B,DAB1,FGGY,HOOK1,JUN,MYSM1,OMA1,PRKAA2,TACSTD2"
TCGA.CA.6719	1	57177387	249198691	54478	-0.0295	NEUTRAL	NA	1285	Too-Many
TCGA.AA.A010.01A	1	57185258	57351583	25	-0.4604	NEUTRAL	NA	2	"C1orf168,C8A"
TCGA.AA.3930.01A	1	57351583	58946645	33	-0.1717	NEUTRAL	NA	4	"C8A,C8B,DAB1,OMA1"
TCGA.AA.A010.01A	1	57372313	60287475	78	0.3249	NEUTRAL	NA	9	"C8A,C8B,DAB1,FGGY,HOOK1,JUN,MYSM1,OMA1,TACSTD2"
TCGA.AF.2693	1	57797350	85298110	9278	0.0219	NEUTRAL	NA	96	"ACADM,ADGRL2,ADGRL4,AK4,AK5,ALG6,ANGPTL3,ANKRD13C,ASB17,ATG4C,C1orf141,C1orf87,CACHD1,CRYZ,CTBS,CTH,CYP2J2,DAB1,DEPDC1,DIRAS3,DNAJB4,DNAJC6,DNASE2B,DOCK7,EFCAB7,ERICH3,FAM73A,FGGY,FOXD3,FPGT,FPGT-TNNI3K,FUBP1,GADD45A,GIPC2,GNG12,GNG5,HHLA3,HOOK1,IFI44,IFI44L,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,LHX8,LPAR3,LRRC40,LRRC7,LRRIQ3,MIER1,MSH4,MYSM1,NEGR1,NEXN,NFIA,OMA1,PDE4B,PGM1,PIGK,PRKACB,PTGER3,PTGFR,RABGGTB,RAVER2,ROR1,RPE65,RPF1,SAMD13,SERBP1,SGIP1,SLC35D1,SLC44A5,SRSF11,SSX2IP,ST6GALNAC3,ST6GALNAC5,TACSTD2,TCTEX1D1,TM2D1,TNNI3K,TTLL7,TYW3,UBE2U,USP1,USP33,WDR78,WLS,ZRANB2,ZZZ3"
TCGA.G4.6295	1	58070243	175333391	28883	-0.3824	NEUTRAL	NA	819	Too-Many
TCGA.AA.3870	1	58232719	59126413	462	0.3232	NEUTRAL	NA	4	"DAB1,MYSM1,OMA1,TACSTD2"
TCGA.F4.6461	1	58317418	59457814	540	-0.5035	NEUTRAL	NA	5	"DAB1,JUN,MYSM1,OMA1,TACSTD2"
TCGA.AG.4015	1	58450028	58746315	146	-0.0046	NEUTRAL	NA	1	DAB1
TCGA.AA.3556	1	58462509	249198691	53827	0.0446	NEUTRAL	NA	1281	Too-Many
TCGA.AG.4015	1	58750636	64405241	2092	-0.3854	NEUTRAL	NA	23	"ALG6,ANGPTL3,ATG4C,C1orf87,CYP2J2,DOCK7,EFCAB7,FGGY,FOXD3,HOOK1,INADL,ITGB3BP,JUN,KANK4,L1TD1,MYSM1,NFIA,OMA1,PGM1,ROR1,TACSTD2,TM2D1,USP1"
TCGA.AG.A01W.01A	1	58814399	60060064	38	-0.3015	NEUTRAL	NA	5	"FGGY,JUN,MYSM1,OMA1,TACSTD2"
TCGA.AA.3531	1	58935331	59342967	161	0.0139	NEUTRAL	NA	4	"JUN,MYSM1,OMA1,TACSTD2"
TCGA.AA.3930.01A	1	58971685	94480078	1752	-0.4538	NEUTRAL	NA	155	Too-Many
TCGA.AA.A01C.01A	1	58999584	110173258	2387	-0.1715	NEUTRAL	NA	228	Too-Many
TCGA.AA.3870	1	59126615	59129049	6	-0.4331	NEUTRAL	NA	1	MYSM1
TCGA.AA.3864	1	59128236	60601855	533	0.0237	NEUTRAL	NA	6	"C1orf87,CYP2J2,FGGY,HOOK1,JUN,MYSM1"
TCGA.AZ.4684.01A	1	59131119	60280740	36	0.2446	NEUTRAL	NA	4	"FGGY,HOOK1,JUN,MYSM1"
TCGA.AA.3870	1	59133023	61041874	647	0.3536	NEUTRAL	NA	6	"C1orf87,CYP2J2,FGGY,HOOK1,JUN,MYSM1"
TCGA.F4.6461	1	59464696	112436900	16634	0.0131	NEUTRAL	NA	262	Too-Many
TCGA.AG.A01W.01A	1	60067024	60111045	20	0.2707	NEUTRAL	NA	1	FGGY
TCGA.AG.A01W.01A	1	60131873	62712190	131	-0.471	NEUTRAL	NA	9	"C1orf87,CYP2J2,FGGY,HOOK1,INADL,KANK4,L1TD1,NFIA,TM2D1"
TCGA.EI.6508	1	60143091	172040582	27129	0.0099	NEUTRAL	NA	791	Too-Many
TCGA.AA.3861.01A	1	60299049	91817056	1444	0.0914	NEUTRAL	NA	127	Too-Many
TCGA.DM.A28M.01A	1	60324043	63050404	148	0.2285	NEUTRAL	NA	10	"C1orf87,CYP2J2,DOCK7,HOOK1,INADL,KANK4,L1TD1,NFIA,TM2D1,USP1"
TCGA.CK.4948.01B	1	60328406	63052178	147	-0.009	NEUTRAL	NA	10	"C1orf87,CYP2J2,DOCK7,HOOK1,INADL,KANK4,L1TD1,NFIA,TM2D1,USP1"
TCGA.AZ.4684.01A	1	60338455	62923162	107	0.1961	NEUTRAL	NA	10	"C1orf87,CYP2J2,DOCK7,HOOK1,INADL,KANK4,L1TD1,NFIA,TM2D1,USP1"
TCGA.AA.A00N.01A	1	60373411	60466687	9	-0.2552	NEUTRAL	NA	2	"C1orf87,CYP2J2"
TCGA.A6.5667	1	60549819	249198691	53112	0.0051	NEUTRAL	NA	1272	Too-Many
TCGA.AA.3864	1	60621903	61567938	315	-0.0188	NEUTRAL	NA	1	NFIA
TCGA.AA.3977	1	60621903	83829356	7491	-0.0633	NEUTRAL	NA	78	"ACADM,ADGRL2,ADGRL4,AK4,AK5,ALG6,ANGPTL3,ANKRD13C,ASB17,ATG4C,C1orf141,CACHD1,CRYZ,CTH,DEPDC1,DIRAS3,DNAJB4,DNAJC6,DOCK7,EFCAB7,ERICH3,FAM73A,FOXD3,FPGT,FPGT-TNNI3K,FUBP1,GADD45A,GIPC2,GNG12,HHLA3,IFI44,IFI44L,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,KANK4,L1TD1,LEPR,LEPROT,LHX8,LRRC40,LRRC7,LRRIQ3,MIER1,MSH4,NEGR1,NEXN,NFIA,PDE4B,PGM1,PIGK,PTGER3,PTGFR,RABGGTB,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TCTEX1D1,TM2D1,TNNI3K,TYW3,UBE2U,USP1,USP33,WDR78,WLS,ZRANB2,ZZZ3"
TCGA.AA.3870	1	61059100	67031946	2250	0.0047	NEUTRAL	NA	25	"AK4,ALG6,ANGPTL3,ATG4C,CACHD1,DNAJC6,DOCK7,EFCAB7,FOXD3,INADL,ITGB3BP,JAK1,KANK4,L1TD1,LEPR,LEPROT,NFIA,PDE4B,PGM1,RAVER2,ROR1,SGIP1,TM2D1,UBE2U,USP1"
TCGA.AA.3850	1	61322057	65925348	1696	0.10575	NEUTRAL	NA	23	"AK4,ALG6,ANGPTL3,ATG4C,CACHD1,DNAJC6,DOCK7,EFCAB7,FOXD3,INADL,ITGB3BP,JAK1,KANK4,L1TD1,LEPR,LEPROT,NFIA,PGM1,RAVER2,ROR1,TM2D1,UBE2U,USP1"
TCGA.A6.3808.01A	1	61331014	62915895	85	-0.491	NEUTRAL	NA	6	"INADL,KANK4,L1TD1,NFIA,TM2D1,USP1"
TCGA.AA.3864	1	61595988	67023342	2032	0.034	NEUTRAL	NA	25	"AK4,ALG6,ANGPTL3,ATG4C,CACHD1,DNAJC6,DOCK7,EFCAB7,FOXD3,INADL,ITGB3BP,JAK1,KANK4,L1TD1,LEPR,LEPROT,NFIA,PDE4B,PGM1,RAVER2,ROR1,SGIP1,TM2D1,UBE2U,USP1"
TCGA.AA.A010.01A	1	61743157	63294659	141	0.2927	NEUTRAL	NA	9	"ANGPTL3,ATG4C,DOCK7,INADL,KANK4,L1TD1,NFIA,TM2D1,USP1"
TCGA.CK.5914.01A	1	61920915	62747129	63	0.1694	NEUTRAL	NA	5	"INADL,KANK4,L1TD1,NFIA,TM2D1"
TCGA.EI.6506	1	62284503	62391059	36	0.2692	NEUTRAL	NA	1	INADL
TCGA.AD.6888	1	62284503	249198691	52420	0.2639	NEUTRAL	NA	1270	Too-Many
TCGA.EI.6506	1	62391233	145382123	18250	-0.1625	NEUTRAL	NA	334	Too-Many
TCGA.AA.3939.01A	1	62545072	62907121	27	0.2224	NEUTRAL	NA	4	"INADL,KANK4,L1TD1,USP1"
TCGA.AG.3594	1	62713245	63376403	197	0.0523	NEUTRAL	NA	5	"ANGPTL3,ATG4C,DOCK7,KANK4,USP1"
TCGA.AG.A01W.01A	1	62713420	62821381	28	-0.1098	NEUTRAL	NA	1	KANK4
TCGA.AA.A00F.01A	1	62747129	62923162	11	0.0037	NEUTRAL	NA	3	"DOCK7,KANK4,USP1"
TCGA.AG.A01W.01A	1	62856929	67664357	314	-0.2372	NEUTRAL	NA	27	"AK4,ALG6,ANGPTL3,ATG4C,C1orf141,CACHD1,DNAJC6,DOCK7,EFCAB7,FOXD3,IL23R,INSL5,ITGB3BP,JAK1,LEPR,LEPROT,MIER1,PDE4B,PGM1,RAVER2,ROR1,SGIP1,SLC35D1,TCTEX1D1,UBE2U,USP1,WDR78"
TCGA.AG.A00C.01A	1	62905492	62939601	12	0.3158	NEUTRAL	NA	2	"DOCK7,USP1"
TCGA.AA.3939.01A	1	62907817	109813809	2258	-0.2726	NEUTRAL	NA	203	Too-Many
TCGA.AG.3909.01A	1	62921027	64059111	99	-0.1101	NEUTRAL	NA	8	"ALG6,ANGPTL3,ATG4C,DOCK7,EFCAB7,FOXD3,ITGB3BP,PGM1"
TCGA.AA.A00F.01A	1	62939601	63096864	42	-0.45	NEUTRAL	NA	2	"ANGPTL3,DOCK7"
TCGA.AG.A00C.01A	1	62940842	64643059	114	-0.15	NEUTRAL	NA	9	"ALG6,ANGPTL3,ATG4C,DOCK7,EFCAB7,FOXD3,ITGB3BP,PGM1,ROR1"
TCGA.AZ.4684.01A	1	62954556	63048792	25	0.3725	NEUTRAL	NA	1	DOCK7
TCGA.CK.5914.01A	1	62958347	67194900	270	0.145	NEUTRAL	NA	19	"AK4,ALG6,ANGPTL3,ATG4C,CACHD1,DNAJC6,DOCK7,EFCAB7,FOXD3,ITGB3BP,JAK1,LEPR,LEPROT,PDE4B,PGM1,RAVER2,ROR1,SGIP1,UBE2U"
TCGA.CK.4948.01B	1	63084340	89325816	1150	0.043	NEUTRAL	NA	101	Too-Many
TCGA.AZ.4684.01A	1	63085521	63102144	6	-0.1299	NEUTRAL	NA	1	DOCK7
TCGA.AA.3509.01A	1	63085521	63991227	47	-0.1803	NEUTRAL	NA	6	"ALG6,ATG4C,DOCK7,EFCAB7,FOXD3,ITGB3BP"
TCGA.AA.3941	1	63090857	63244439	34	0.3526	NEUTRAL	NA	1	DOCK7
TCGA.AA.A00F.01A	1	63099108	63128644	8	-0.0538	NEUTRAL	NA	1	DOCK7
TCGA.AZ.4684.01A	1	63128644	63282209	5	0.0098	NEUTRAL	NA	2	"ATG4C,DOCK7"
TCGA.AA.3941	1	63252372	63385494	43	-0.292	NEUTRAL	NA	1	ATG4C
TCGA.AA.A00F.01A	1	63269399	64643059	64	-0.3767	NEUTRAL	NA	7	"ALG6,ATG4C,EFCAB7,FOXD3,ITGB3BP,PGM1,ROR1"
TCGA.AA.A010.01A	1	63299662	64726277	73	-0.3632	NEUTRAL	NA	8	"ALG6,ATG4C,EFCAB7,FOXD3,ITGB3BP,PGM1,ROR1,UBE2U"
TCGA.AA.3941	1	63386443	63564068	124	0.2827	NEUTRAL	NA	0	None
TCGA.5M.AAT5	1	63467594	63473372	7	-0.4984	NEUTRAL	NA	0	None
TCGA.AA.3667	1	63472867	102052956	12128	-0.0206	NEUTRAL	NA	169	Too-Many
TCGA.5M.AAT5	1	63473699	63800968	144	0.079	NEUTRAL	NA	1	FOXD3
TCGA.AA.3941	1	63614043	63747458	47	0.0259	NEUTRAL	NA	0	None
TCGA.DM.A28M.01A	1	63788729	68915487	336	0.3263	NEUTRAL	NA	30	"AK4,ALG6,C1orf141,CACHD1,DIRAS3,DNAJC6,EFCAB7,FOXD3,GADD45A,GNG12,IL12RB2,IL23R,INSL5,ITGB3BP,JAK1,LEPR,LEPROT,MIER1,PDE4B,PGM1,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,TCTEX1D1,UBE2U,WDR78,WLS"
TCGA.AA.3941	1	63872358	63923149	11	-0.5017	NEUTRAL	NA	2	"ALG6,ITGB3BP"
TCGA.AA.3941	1	63924818	64317179	142	0.3554	NEUTRAL	NA	4	"EFCAB7,ITGB3BP,PGM1,ROR1"
TCGA.AZ.4684.01A	1	64011574	66037992	132	0.2387	NEUTRAL	NA	11	"AK4,CACHD1,DNAJC6,EFCAB7,JAK1,LEPR,LEPROT,PGM1,RAVER2,ROR1,UBE2U"
TCGA.AA.3941	1	64318081	64362272	20	-0.4406	NEUTRAL	NA	1	ROR1
TCGA.A6.2685	1	64362272	145532548	17550	-0.3062	NEUTRAL	NA	330	Too-Many
TCGA.AA.3941	1	64366658	66303383	673	0.2182	NEUTRAL	NA	10	"AK4,CACHD1,DNAJC6,JAK1,LEPR,LEPROT,PDE4B,RAVER2,ROR1,UBE2U"
TCGA.A6.2679	1	64404257	111218919	14320	-0.3386	NEUTRAL	NA	226	Too-Many
TCGA.AG.4015	1	64411570	64688336	114	-0.0366	NEUTRAL	NA	2	"ROR1,UBE2U"
TCGA.AA.A00F.01A	1	64669677	64680471	5	0.1211	NEUTRAL	NA	1	UBE2U
TCGA.AG.3909.01A	1	64686465	65871536	83	0.2135	NEUTRAL	NA	6	"AK4,CACHD1,DNAJC6,JAK1,RAVER2,UBE2U"
TCGA.AA.A00F.01A	1	64686465	67487150	135	-0.3871	NEUTRAL	NA	15	"AK4,CACHD1,DNAJC6,INSL5,JAK1,LEPR,LEPROT,MIER1,PDE4B,RAVER2,SGIP1,SLC35D1,TCTEX1D1,UBE2U,WDR78"
TCGA.AG.4015	1	64688634	65313944	234	-0.4053	NEUTRAL	NA	4	"CACHD1,JAK1,RAVER2,UBE2U"
TCGA.AG.A00C.01A	1	64707279	65871536	81	-0.1883	NEUTRAL	NA	6	"AK4,CACHD1,DNAJC6,JAK1,RAVER2,UBE2U"
TCGA.AA.A010.01A	1	64732648	65147641	26	0.2359	NEUTRAL	NA	1	CACHD1
TCGA.AA.A010.01A	1	65255024	65280360	7	0.3257	NEUTRAL	NA	1	RAVER2
TCGA.AA.A02K.01A	1	65296476	65301041	3	-0.4625	NEUTRAL	NA	2	"JAK1,RAVER2"
TCGA.AG.3891.01A	1	65300201	65305245	6	0.3175	NEUTRAL	NA	1	JAK1
TCGA.AA.A02K.01A	1	65301735	103345189	1747	-0.1344	NEUTRAL	NA	162	Too-Many
TCGA.AG.3891.01A	1	65306899	67519447	152	-0.1657	NEUTRAL	NA	12	"AK4,DNAJC6,INSL5,JAK1,LEPR,LEPROT,MIER1,PDE4B,SGIP1,SLC35D1,TCTEX1D1,WDR78"
TCGA.AG.4015	1	65324418	66107545	254	0.0205	NEUTRAL	NA	5	"AK4,DNAJC6,JAK1,LEPR,LEPROT"
TCGA.AA.A010.01A	1	65339004	67891768	179	0.0703	NEUTRAL	NA	16	"AK4,C1orf141,DNAJC6,IL12RB2,IL23R,INSL5,JAK1,LEPR,LEPROT,MIER1,PDE4B,SERBP1,SGIP1,SLC35D1,TCTEX1D1,WDR78"
TCGA.F4.6807	1	65583107	120687114	17018	-0.4399	NEUTRAL	NA	303	Too-Many
TCGA.AA.3850	1	65937064	66242819	104	-0.20515	NEUTRAL	NA	1	LEPR
TCGA.AG.A00C.01A	1	66031182	67390303	82	-0.2013	NEUTRAL	NA	6	"INSL5,LEPR,PDE4B,SGIP1,TCTEX1D1,WDR78"
TCGA.AG.3909.01A	1	66037992	67507864	102	-0.0315	NEUTRAL	NA	8	"INSL5,LEPR,MIER1,PDE4B,SGIP1,SLC35D1,TCTEX1D1,WDR78"
TCGA.AA.3509.01A	1	66058313	67568919	110	-0.1983	NEUTRAL	NA	9	"C1orf141,INSL5,LEPR,MIER1,PDE4B,SGIP1,SLC35D1,TCTEX1D1,WDR78"
TCGA.AG.4015	1	66114746	73202368	2246	-0.4058	NEUTRAL	NA	26	"ANKRD13C,C1orf141,CTH,DEPDC1,DIRAS3,GADD45A,GNG12,HHLA3,IL12RB2,IL23R,INSL5,LRRC40,LRRC7,MIER1,NEGR1,PDE4B,PTGER3,RPE65,SERBP1,SGIP1,SLC35D1,SRSF11,TCTEX1D1,WDR78,WLS,ZRANB2"
TCGA.AA.3844	1	66402883	66958182	258	-0.4541	NEUTRAL	NA	1	PDE4B
TCGA.AA.3982	1	66511403	67029557	251	-0.5122	NEUTRAL	NA	2	"PDE4B,SGIP1"
TCGA.DY.A1DC	1	66517049	70116540	1288	0.0494	NEUTRAL	NA	17	"C1orf141,DEPDC1,DIRAS3,GADD45A,GNG12,IL12RB2,IL23R,INSL5,MIER1,PDE4B,RPE65,SERBP1,SGIP1,SLC35D1,TCTEX1D1,WDR78,WLS"
TCGA.AA.3844	1	67037897	67137406	62	-0.3551	NEUTRAL	NA	1	SGIP1
TCGA.AA.3864	1	67037897	102012976	10703	-0.086	NEUTRAL	NA	154	Too-Many
TCGA.AA.3870	1	67037897	189147179	29877	-0.0181	NEUTRAL	NA	850	Too-Many
TCGA.AA.3982	1	67039729	67602138	223	-0.0627	NEUTRAL	NA	7	"C1orf141,INSL5,MIER1,SGIP1,SLC35D1,TCTEX1D1,WDR78"
TCGA.AA.3941	1	67041955	67556177	200	-0.0201	NEUTRAL	NA	6	"INSL5,MIER1,SGIP1,SLC35D1,TCTEX1D1,WDR78"
TCGA.AA.3850	1	67041955	68936518	746	-0.00045	NEUTRAL	NA	15	"C1orf141,DIRAS3,GADD45A,GNG12,IL12RB2,IL23R,INSL5,MIER1,RPE65,SERBP1,SGIP1,SLC35D1,TCTEX1D1,WDR78,WLS"
TCGA.AA.3844	1	67138037	68901991	667	-0.0432	NEUTRAL	NA	15	"C1orf141,DIRAS3,GADD45A,GNG12,IL12RB2,IL23R,INSL5,MIER1,RPE65,SERBP1,SGIP1,SLC35D1,TCTEX1D1,WDR78,WLS"
TCGA.AG.3611.01A	1	67184959	67263649	12	-0.2478	NEUTRAL	NA	3	"INSL5,SGIP1,TCTEX1D1"
TCGA.AG.3611.01A	1	67266698	67487150	21	0.1378	NEUTRAL	NA	4	"INSL5,MIER1,SLC35D1,WDR78"
TCGA.AG.A00C.01A	1	67423710	67487150	15	-0.1488	NEUTRAL	NA	2	"MIER1,SLC35D1"
TCGA.AA.A00F.01A	1	67507864	67518446	6	0.2007	NEUTRAL	NA	1	SLC35D1
TCGA.AG.3611.01A	1	67507864	67558649	8	-0.3256	NEUTRAL	NA	2	"C1orf141,SLC35D1"
TCGA.AG.3909.01A	1	67519447	67666413	11	0.0477	NEUTRAL	NA	3	"C1orf141,IL23R,SLC35D1"
TCGA.AA.A01Q.01A	1	67519447	67891768	37	0.1909	NEUTRAL	NA	5	"C1orf141,IL12RB2,IL23R,SERBP1,SLC35D1"
TCGA.AG.A00C.01A	1	67519447	68944546	71	-0.0221	NEUTRAL	NA	11	"C1orf141,DEPDC1,DIRAS3,GADD45A,GNG12,IL12RB2,IL23R,RPE65,SERBP1,SLC35D1,WLS"
TCGA.AA.A00F.01A	1	67519447	68947076	73	-0.2277	NEUTRAL	NA	11	"C1orf141,DEPDC1,DIRAS3,GADD45A,GNG12,IL12RB2,IL23R,RPE65,SERBP1,SLC35D1,WLS"
TCGA.AG.3891.01A	1	67558649	67889833	34	0.0919	NEUTRAL	NA	4	"C1orf141,IL12RB2,IL23R,SERBP1"
TCGA.AG.3611.01A	1	67560900	67724199	15	0.2456	NEUTRAL	NA	2	"C1orf141,IL23R"
TCGA.AZ.4684.01A	1	67577207	68697829	56	0.1387	NEUTRAL	NA	8	"C1orf141,DIRAS3,GADD45A,GNG12,IL12RB2,IL23R,SERBP1,WLS"
TCGA.CK.5914.01A	1	67577207	68960084	78	-0.0205	NEUTRAL	NA	10	"C1orf141,DEPDC1,DIRAS3,GADD45A,GNG12,IL12RB2,IL23R,RPE65,SERBP1,WLS"
TCGA.AA.3982	1	67609445	68332672	282	0.1715	NEUTRAL	NA	5	"GADD45A,GNG12,IL12RB2,IL23R,SERBP1"
TCGA.AG.3909.01A	1	67672586	67724199	6	0.3382	NEUTRAL	NA	1	IL23R
TCGA.AG.3611.01A	1	67785993	67804280	7	-0.1038	NEUTRAL	NA	1	IL12RB2
TCGA.AG.3909.01A	1	67785993	67804280	7	-0.3431	NEUTRAL	NA	1	IL12RB2
TCGA.AG.3909.01A	1	67816513	67861183	7	0.0034	NEUTRAL	NA	1	IL12RB2
TCGA.AG.3611.01A	1	67816513	68512292	21	0.3264	NEUTRAL	NA	5	"DIRAS3,GADD45A,GNG12,IL12RB2,SERBP1"
TCGA.AA.A00N.01A	1	67878840	68697829	28	-0.3621	NEUTRAL	NA	5	"DIRAS3,GADD45A,GNG12,SERBP1,WLS"
TCGA.AG.3891.01A	1	67890514	78162952	334	-0.2157	NEUTRAL	NA	35	"ACADM,AK5,ANKRD13C,ASB17,CRYZ,CTH,DEPDC1,DIRAS3,ERICH3,FPGT,FPGT-TNNI3K,GADD45A,GNG12,HHLA3,LHX8,LRRC40,LRRC7,LRRIQ3,MSH4,NEGR1,PIGK,PTGER3,RABGGTB,RPE65,SERBP1,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,USP33,WLS,ZRANB2,ZZZ3"
TCGA.AG.3909.01A	1	67895642	74663916	160	-0.1504	NEUTRAL	NA	19	"ANKRD13C,CTH,DEPDC1,DIRAS3,FPGT,FPGT-TNNI3K,GADD45A,GNG12,HHLA3,LRRC40,LRRC7,LRRIQ3,NEGR1,PTGER3,RPE65,SERBP1,SRSF11,WLS,ZRANB2"
TCGA.AG.A01W.01A	1	67925891	77939611	339	-0.2221	NEUTRAL	NA	32	"ACADM,AK5,ANKRD13C,ASB17,CRYZ,CTH,DEPDC1,DIRAS3,ERICH3,FPGT,FPGT-TNNI3K,GADD45A,GNG12,HHLA3,LHX8,LRRC40,LRRC7,LRRIQ3,MSH4,NEGR1,PIGK,PTGER3,RABGGTB,RPE65,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,WLS,ZRANB2"
TCGA.AA.3941	1	68110794	68480670	142	0.0831	NEUTRAL	NA	2	"GADD45A,GNG12"
TCGA.AA.A01Q.01A	1	68151995	70705062	86	-0.0412	NEUTRAL	NA	9	"DEPDC1,DIRAS3,GADD45A,GNG12,LRRC40,LRRC7,RPE65,SRSF11,WLS"
TCGA.AA.A010.01A	1	68171102	76007070	254	-0.0168	NEUTRAL	NA	23	"ANKRD13C,CRYZ,CTH,DEPDC1,DIRAS3,ERICH3,FPGT,FPGT-TNNI3K,GNG12,HHLA3,LHX8,LRRC40,LRRC7,LRRIQ3,NEGR1,PTGER3,RPE65,SLC44A5,SRSF11,TNNI3K,TYW3,WLS,ZRANB2"
TCGA.AA.3982	1	68337492	68513483	64	-0.1537	NEUTRAL	NA	1	DIRAS3
TCGA.AA.3982	1	68559649	68901991	150	0.0315	NEUTRAL	NA	2	"RPE65,WLS"
TCGA.AA.3941	1	68559649	68936518	170	0.1272	NEUTRAL	NA	2	"RPE65,WLS"
TCGA.AG.3611.01A	1	68564273	89664421	701	-0.0261	NEUTRAL	NA	78	"ACADM,ADGRL2,ADGRL4,AK5,ANKRD13C,ASB17,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CRYZ,CTBS,CTH,CYR61,DDAH1,DEPDC1,DNAJB4,DNASE2B,ERICH3,FAM73A,FPGT,FPGT-TNNI3K,FUBP1,GBP1,GBP2,GBP3,GBP4,GBP7,GIPC2,GNG5,GTF2B,HHLA3,HS2ST1,IFI44,IFI44L,LHX8,LMO4,LOC101927844,LPAR3,LRRC40,LRRC7,LRRIQ3,MCOLN2,MCOLN3,MSH4,NEGR1,NEXN,ODF2L,PIGK,PKN2,PRKACB,PTGER3,PTGFR,RABGGTB,RBMXL1,RPE65,RPF1,SAMD13,SEP15,SH3GLB1,SLC44A5,SRSF11,SSX2IP,ST6GALNAC3,ST6GALNAC5,SYDE2,TNNI3K,TTLL7,TYW3,USP33,WDR63,WLS,ZNHIT6,ZRANB2,ZZZ3"
TCGA.AA.3509.01A	1	68895418	70639070	54	0.2002	NEUTRAL	NA	4	"DEPDC1,LRRC40,LRRC7,RPE65"
TCGA.AA.3844	1	68905980	69043223	58	-0.4363	NEUTRAL	NA	2	"DEPDC1,RPE65"
TCGA.AA.3982	1	68905980	73012603	1073	-0.4958	NEUTRAL	NA	11	"ANKRD13C,CTH,DEPDC1,HHLA3,LRRC40,LRRC7,NEGR1,PTGER3,RPE65,SRSF11,ZRANB2"
TCGA.AA.3941	1	68939715	72016277	812	-0.4735	NEUTRAL	NA	10	"ANKRD13C,CTH,DEPDC1,HHLA3,LRRC40,LRRC7,NEGR1,PTGER3,SRSF11,ZRANB2"
TCGA.AG.A00C.01A	1	68947076	68960084	8	0.3087	NEUTRAL	NA	1	DEPDC1
TCGA.AA.A00F.01A	1	68949581	68960084	6	0.1195	NEUTRAL	NA	1	DEPDC1
TCGA.CK.5914.01A	1	68962561	70687279	45	0.3339	NEUTRAL	NA	4	"DEPDC1,LRRC40,LRRC7,SRSF11"
TCGA.AG.A00C.01A	1	68962561	78097985	286	-0.179	NEUTRAL	NA	28	"ACADM,AK5,ANKRD13C,ASB17,CRYZ,CTH,DEPDC1,ERICH3,FPGT,FPGT-TNNI3K,HHLA3,LHX8,LRRC40,LRRC7,LRRIQ3,MSH4,NEGR1,PIGK,PTGER3,RABGGTB,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,ZRANB2,ZZZ3"
TCGA.AA.A00F.01A	1	68962561	78193933	298	-0.3676	NEUTRAL	NA	29	"ACADM,AK5,ANKRD13C,ASB17,CRYZ,CTH,DEPDC1,ERICH3,FPGT,FPGT-TNNI3K,HHLA3,LHX8,LRRC40,LRRC7,LRRIQ3,MSH4,NEGR1,PIGK,PTGER3,RABGGTB,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,USP33,ZRANB2,ZZZ3"
TCGA.AG.A008.01A	1	68962561	78206507	307	0.0447	NEUTRAL	NA	29	"ACADM,AK5,ANKRD13C,ASB17,CRYZ,CTH,DEPDC1,ERICH3,FPGT,FPGT-TNNI3K,HHLA3,LHX8,LRRC40,LRRC7,LRRIQ3,MSH4,NEGR1,PIGK,PTGER3,RABGGTB,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,USP33,ZRANB2,ZZZ3"
TCGA.CM.6677	1	69659839	70758679	278	-0.2115	NEUTRAL	NA	4	"ANKRD13C,LRRC40,LRRC7,SRSF11"
TCGA.AA.3844	1	69891313	91917727	6837	-0.3725	NEUTRAL	NA	84	"ACADM,ADGRL2,ADGRL4,AK5,ANKRD13C,ASB17,BARHL2,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CRYZ,CTBS,CTH,CYR61,DDAH1,DNAJB4,DNASE2B,ERICH3,FAM73A,FPGT,FPGT-TNNI3K,FUBP1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GIPC2,GNG5,GTF2B,HFM1,HHLA3,HS2ST1,IFI44,IFI44L,LHX8,LMO4,LOC101927844,LPAR3,LRRC40,LRRC7,LRRC8B,LRRC8C,LRRC8D,LRRIQ3,MCOLN2,MCOLN3,MSH4,NEGR1,NEXN,ODF2L,PIGK,PKN2,PRKACB,PTGER3,PTGFR,RABGGTB,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SLC44A5,SRSF11,SSX2IP,ST6GALNAC3,ST6GALNAC5,SYDE2,TNNI3K,TTLL7,TYW3,USP33,WDR63,ZNF326,ZNF644,ZNHIT6,ZRANB2,ZZZ3"
TCGA.DM.A28H	1	70004698	70363646	113	0.0839	NEUTRAL	NA	1	LRRC7
TCGA.DY.A1DC	1	70141057	71036884	230	0.053	NEUTRAL	NA	6	"ANKRD13C,CTH,HHLA3,LRRC40,LRRC7,SRSF11"
TCGA.AG.3594	1	70424441	70470681	13	-0.0572	NEUTRAL	NA	1	LRRC7
TCGA.AA.3850	1	70522078	70731884	47	-0.23365	NEUTRAL	NA	4	"ANKRD13C,LRRC40,LRRC7,SRSF11"
TCGA.AZ.4684.01A	1	70641476	70904700	46	0.1199	NEUTRAL	NA	5	"ANKRD13C,CTH,HHLA3,LRRC40,SRSF11"
TCGA.AA.A00N.01A	1	70652887	70716016	14	-0.4795	NEUTRAL	NA	2	"LRRC40,SRSF11"
TCGA.CK.5914.01A	1	70694088	70889918	31	-0.2513	NEUTRAL	NA	4	"ANKRD13C,CTH,HHLA3,SRSF11"
TCGA.AA.A01Q.01A	1	70710320	70904700	31	0.2806	NEUTRAL	NA	4	"ANKRD13C,CTH,HHLA3,SRSF11"
TCGA.CK.5914.01A	1	70895406	74663916	46	0.1804	NEUTRAL	NA	7	"CTH,FPGT,FPGT-TNNI3K,LRRIQ3,NEGR1,PTGER3,ZRANB2"
TCGA.AA.3850	1	70954298	71556841	233	-0.25605	NEUTRAL	NA	2	"PTGER3,ZRANB2"
TCGA.DY.A1DC	1	71038866	71067052	12	-0.3571	NEUTRAL	NA	0	None
TCGA.DY.A1DC	1	71070311	71923103	248	0.0396	NEUTRAL	NA	3	"NEGR1,PTGER3,ZRANB2"
TCGA.AA.3697	1	71296001	249198691	49334	0.0586	NEUTRAL	NA	1226	Too-Many
TCGA.AA.A01Q.01A	1	71318456	75086371	66	-0.1106	NEUTRAL	NA	8	"ERICH3,FPGT,FPGT-TNNI3K,LRRIQ3,NEGR1,PTGER3,TNNI3K,ZRANB2"
TCGA.AA.3509.01A	1	71439939	75740585	118	0.0426	NEUTRAL	NA	12	"CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LHX8,LRRIQ3,NEGR1,PTGER3,SLC44A5,TNNI3K,TYW3,ZRANB2"
TCGA.AA.A00N.01A	1	71530697	71538107	8	-0.4937	NEUTRAL	NA	1	ZRANB2
TCGA.CM.6677	1	72021991	97171413	7773	-0.2069	NEUTRAL	NA	108	Too-Many
TCGA.DY.A1DC	1	72049986	74093605	465	0.0557	NEUTRAL	NA	1	NEGR1
TCGA.CM.5864	1	72740733	245636409	47882	0.238	NEUTRAL	NA	1165	Too-Many
TCGA.D5.5538	1	72811903	203924291	32478	0.0107	NEUTRAL	NA	907	Too-Many
TCGA.AA.3549	1	73045576	74540819	346	-0.0264	NEUTRAL	NA	1	LRRIQ3
TCGA.A6.A56B	1	73178914	118538077	13934	-0.4351	NEUTRAL	NA	261	Too-Many
TCGA.AG.4015	1	73221920	73758116	93	-0.0574	NEUTRAL	NA	0	None
TCGA.AG.4015	1	73775928	75520599	458	-0.4446	NEUTRAL	NA	7	"CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LRRIQ3,TNNI3K,TYW3"
TCGA.CM.5348	1	74084867	241700805	46400	0.332	NEUTRAL	NA	1145	Too-Many
TCGA.DY.A1DC	1	74181519	75060312	234	0.033	NEUTRAL	NA	5	"ERICH3,FPGT,FPGT-TNNI3K,LRRIQ3,TNNI3K"
TCGA.AG.3906.01A	1	74492450	77948922	162	-0.103	NEUTRAL	NA	17	"ACADM,AK5,ASB17,CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LHX8,LRRIQ3,MSH4,PIGK,RABGGTB,SLC44A5,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3"
TCGA.F5.6811.01A	1	74605470	74677715	7	0.2265	NEUTRAL	NA	3	"FPGT,FPGT-TNNI3K,LRRIQ3"
TCGA.F5.6811.01A	1	74701665	74874515	21	-0.275	NEUTRAL	NA	2	"FPGT-TNNI3K,TNNI3K"
TCGA.AA.A00N.01A	1	74737253	75602736	56	0.364	NEUTRAL	NA	6	"CRYZ,ERICH3,FPGT-TNNI3K,LHX8,TNNI3K,TYW3"
TCGA.AG.3909.01A	1	74737253	78204898	184	-0.069	NEUTRAL	NA	17	"ACADM,AK5,ASB17,CRYZ,ERICH3,FPGT-TNNI3K,LHX8,MSH4,PIGK,RABGGTB,SLC44A5,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,USP33,ZZZ3"
TCGA.F5.6811.01A	1	74879555	74971466	14	-0.0096	NEUTRAL	NA	2	"FPGT-TNNI3K,TNNI3K"
TCGA.CK.5914.01A	1	74929077	74957749	8	-0.3675	NEUTRAL	NA	2	"FPGT-TNNI3K,TNNI3K"
TCGA.F5.6811.01A	1	74974798	86804075	529	-0.3241	NEUTRAL	NA	46	"ACADM,ADGRL2,ADGRL4,AK5,ASB17,BCL10,C1orf52,COL24A1,CRYZ,CTBS,CYR61,DDAH1,DNAJB4,DNASE2B,ERICH3,FAM73A,FPGT-TNNI3K,FUBP1,GIPC2,GNG5,IFI44,IFI44L,LHX8,LPAR3,MCOLN2,MCOLN3,MSH4,NEXN,PIGK,PRKACB,PTGFR,RABGGTB,RPF1,SAMD13,SLC44A5,SSX2IP,ST6GALNAC3,ST6GALNAC5,SYDE2,TNNI3K,TTLL7,TYW3,USP33,WDR63,ZNHIT6,ZZZ3"
TCGA.CK.5914.01A	1	75005861	76190391	65	0.3215	NEUTRAL	NA	8	"ACADM,CRYZ,ERICH3,FPGT-TNNI3K,LHX8,SLC44A5,TNNI3K,TYW3"
TCGA.DY.A1DC	1	75071024	77080064	669	0.023	NEUTRAL	NA	10	"ACADM,ASB17,CRYZ,ERICH3,LHX8,MSH4,RABGGTB,SLC44A5,ST6GALNAC3,TYW3"
TCGA.AA.A00D.01A	1	75101927	79094563	204	-0.5141	NEUTRAL	NA	22	"ACADM,AK5,ASB17,CRYZ,DNAJB4,ERICH3,FAM73A,FUBP1,GIPC2,IFI44L,LHX8,MSH4,NEXN,PIGK,PTGFR,RABGGTB,SLC44A5,ST6GALNAC3,ST6GALNAC5,TYW3,USP33,ZZZ3"
TCGA.AA.A01Q.01A	1	75139096	100661781	1040	0.0828	NEUTRAL	NA	117	Too-Many
TCGA.CM.4752	1	75164677	79293814	1257	0.2257	NEUTRAL	NA	22	"ACADM,AK5,ASB17,CRYZ,DNAJB4,FAM73A,FUBP1,GIPC2,IFI44,IFI44L,LHX8,MSH4,NEXN,PIGK,PTGFR,RABGGTB,SLC44A5,ST6GALNAC3,ST6GALNAC5,TYW3,USP33,ZZZ3"
TCGA.AA.A00L.01A	1	75180187	76384586	81	-0.4513	NEUTRAL	NA	8	"ACADM,ASB17,CRYZ,LHX8,MSH4,RABGGTB,SLC44A5,TYW3"
TCGA.AG.4015	1	75523456	76136436	169	0.0439	NEUTRAL	NA	2	"LHX8,SLC44A5"
TCGA.AA.3941	1	75715254	76650522	340	-0.0846	NEUTRAL	NA	6	"ACADM,ASB17,MSH4,RABGGTB,SLC44A5,ST6GALNAC3"
TCGA.AA.A01F.01A	1	75716838	145508866	2394	-0.3379	NEUTRAL	NA	285	Too-Many
TCGA.AG.3882	1	75820792	75823197	3	0.1748	NEUTRAL	NA	1	SLC44A5
TCGA.AA.3982	1	76109572	78807627	885	-0.1414	NEUTRAL	NA	15	"ACADM,AK5,ASB17,DNAJB4,FAM73A,FUBP1,GIPC2,MSH4,NEXN,PIGK,RABGGTB,ST6GALNAC3,ST6GALNAC5,USP33,ZZZ3"
TCGA.AA.3850	1	76114663	76755726	287	-0.06035	NEUTRAL	NA	5	"ACADM,ASB17,MSH4,RABGGTB,ST6GALNAC3"
TCGA.AG.4015	1	76137605	79960197	1215	-0.4018	NEUTRAL	NA	19	"ACADM,ADGRL4,AK5,ASB17,DNAJB4,FAM73A,FUBP1,GIPC2,IFI44,IFI44L,MSH4,NEXN,PIGK,PTGFR,RABGGTB,ST6GALNAC3,ST6GALNAC5,USP33,ZZZ3"
TCGA.AZ.4684.01A	1	76190391	76333139	28	-0.0664	NEUTRAL	NA	3	"ACADM,MSH4,RABGGTB"
TCGA.CK.5914.01A	1	76194034	76272639	21	-0.4424	NEUTRAL	NA	3	"ACADM,MSH4,RABGGTB"
TCGA.DY.A1DG	1	76214507	82280219	2047	-0.4485	NEUTRAL	NA	20	"ACADM,ADGRL2,ADGRL4,AK5,ASB17,DNAJB4,FAM73A,FUBP1,GIPC2,IFI44,IFI44L,MSH4,NEXN,PIGK,PTGFR,RABGGTB,ST6GALNAC3,ST6GALNAC5,USP33,ZZZ3"
TCGA.CK.5914.01A	1	76276330	78245285	90	0.1701	NEUTRAL	NA	8	"AK5,ASB17,MSH4,PIGK,ST6GALNAC3,ST6GALNAC5,USP33,ZZZ3"
TCGA.AA.A010.01A	1	76280654	77094295	25	-0.0381	NEUTRAL	NA	3	"ASB17,MSH4,ST6GALNAC3"
TCGA.AA.3509.01A	1	76342597	77684945	35	-0.0462	NEUTRAL	NA	5	"ASB17,MSH4,PIGK,ST6GALNAC3,ST6GALNAC5"
TCGA.AA.3872	1	77022789	78421784	405	-0.2864	NEUTRAL	NA	9	"AK5,FAM73A,FUBP1,NEXN,PIGK,ST6GALNAC3,ST6GALNAC5,USP33,ZZZ3"
TCGA.DY.A1DC	1	77098728	83177364	1939	0.0227	NEUTRAL	NA	15	"ADGRL2,ADGRL4,AK5,DNAJB4,FAM73A,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PIGK,PTGFR,ST6GALNAC5,USP33,ZZZ3"
TCGA.AA.3941	1	77403622	77738897	67	-0.1445	NEUTRAL	NA	2	"PIGK,ST6GALNAC5"
TCGA.AA.3850	1	77471730	78766838	304	-0.00125	NEUTRAL	NA	10	"AK5,DNAJB4,FAM73A,FUBP1,GIPC2,NEXN,PIGK,ST6GALNAC5,USP33,ZZZ3"
TCGA.AY.A54L.01A	1	77509838	79472228	144	0.3361	NEUTRAL	NA	14	"ADGRL4,AK5,DNAJB4,FAM73A,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PIGK,PTGFR,ST6GALNAC5,USP33,ZZZ3"
TCGA.AA.A010.01A	1	77515896	78280756	67	0.01	NEUTRAL	NA	6	"AK5,FAM73A,PIGK,ST6GALNAC5,USP33,ZZZ3"
TCGA.AG.3882	1	77546778	78504263	209	0.3084	NEUTRAL	NA	8	"AK5,DNAJB4,FAM73A,FUBP1,NEXN,PIGK,USP33,ZZZ3"
TCGA.AZ.4684.01A	1	77684945	78958402	99	0.278	NEUTRAL	NA	10	"AK5,DNAJB4,FAM73A,FUBP1,GIPC2,NEXN,PIGK,PTGFR,USP33,ZZZ3"
TCGA.AA.3941	1	77739380	78645700	209	0.2286	NEUTRAL	NA	8	"AK5,DNAJB4,FAM73A,FUBP1,GIPC2,NEXN,USP33,ZZZ3"
TCGA.AG.A01W.01A	1	78021480	79129357	66	-0.2793	NEUTRAL	NA	11	"AK5,DNAJB4,FAM73A,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PTGFR,USP33,ZZZ3"
TCGA.AG.3906.01A	1	78024272	78308945	40	0.0194	NEUTRAL	NA	4	"AK5,FAM73A,USP33,ZZZ3"
TCGA.AG.A00C.01A	1	78162952	78177368	4	0.3492	NEUTRAL	NA	1	USP33
TCGA.AG.3891.01A	1	78163523	78324939	30	0.0796	NEUTRAL	NA	2	"FAM73A,USP33"
TCGA.AG.A00C.01A	1	78178834	78193933	10	-0.0648	NEUTRAL	NA	1	USP33
TCGA.AG.A00C.01A	1	78195493	78248901	8	0.2875	NEUTRAL	NA	2	"FAM73A,USP33"
TCGA.AA.A00F.01A	1	78195493	78340482	23	-0.0183	NEUTRAL	NA	2	"FAM73A,USP33"
TCGA.AG.A00C.01A	1	78266968	78381709	15	-0.1402	NEUTRAL	NA	2	"FAM73A,NEXN"
TCGA.CK.5914.01A	1	78381709	78963508	37	0.0193	NEUTRAL	NA	5	"DNAJB4,FUBP1,GIPC2,NEXN,PTGFR"
TCGA.AG.3906.01A	1	78381709	82408645	69	-0.0185	NEUTRAL	NA	9	"ADGRL2,ADGRL4,DNAJB4,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PTGFR"
TCGA.AG.3909.01A	1	78381709	84948551	137	0.0376	NEUTRAL	NA	14	"ADGRL2,ADGRL4,DNAJB4,DNASE2B,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PRKACB,PTGFR,RPF1,SAMD13,TTLL7"
TCGA.AA.A010.01A	1	78381709	85655733	235	-0.0648	NEUTRAL	NA	22	"ADGRL2,ADGRL4,CTBS,DNAJB4,DNASE2B,FUBP1,GIPC2,GNG5,IFI44,IFI44L,LPAR3,MCOLN2,MCOLN3,NEXN,PRKACB,PTGFR,RPF1,SAMD13,SSX2IP,SYDE2,TTLL7,WDR63"
TCGA.AG.3891.01A	1	78381709	92326962	595	-0.165	NEUTRAL	NA	57	"ADGRL2,ADGRL4,BARHL2,BCL10,C1orf52,CCBL2,CDC7,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNAJB4,DNASE2B,FUBP1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GIPC2,GNG5,GTF2B,HFM1,HS2ST1,IFI44,IFI44L,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,NEXN,ODF2L,PKN2,PRKACB,PTGFR,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TGFBR3,TTLL7,WDR63,ZNF326,ZNF644,ZNHIT6"
TCGA.AG.A008.01A	1	78381709	113161504	1796	0.0855	NEUTRAL	NA	193	Too-Many
TCGA.AA.3509.01A	1	78407667	78958402	26	-0.2097	NEUTRAL	NA	5	"DNAJB4,FUBP1,GIPC2,NEXN,PTGFR"
TCGA.AA.A00F.01A	1	78408234	89528709	317	-0.3126	NEUTRAL	NA	43	"ADGRL2,ADGRL4,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNAJB4,DNASE2B,FUBP1,GBP1,GBP3,GIPC2,GNG5,GTF2B,HS2ST1,IFI44,IFI44L,LMO4,LOC101927844,LPAR3,MCOLN2,MCOLN3,NEXN,ODF2L,PKN2,PRKACB,PTGFR,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TTLL7,WDR63,ZNHIT6"
TCGA.AA.3862.01A	1	78414802	84877981	127	-0.4147	NEUTRAL	NA	12	"ADGRL2,ADGRL4,DNAJB4,DNASE2B,FUBP1,GIPC2,IFI44,IFI44L,PRKACB,PTGFR,SAMD13,TTLL7"
TCGA.AG.A00C.01A	1	78470755	84880243	109	-0.2215	NEUTRAL	NA	11	"ADGRL2,ADGRL4,DNAJB4,DNASE2B,GIPC2,IFI44,IFI44L,PRKACB,PTGFR,SAMD13,TTLL7"
TCGA.AG.3882	1	78504410	121155527	13155	-0.2571	NEUTRAL	NA	252	Too-Many
TCGA.AA.3941	1	78659620	78783160	48	-0.2174	NEUTRAL	NA	0	None
TCGA.AA.3509.01A	1	78963508	84668329	86	0.1735	NEUTRAL	NA	7	"ADGRL2,ADGRL4,IFI44,IFI44L,PRKACB,PTGFR,TTLL7"
TCGA.AG.A01W.01A	1	79129801	84108206	32	0.1137	NEUTRAL	NA	2	"ADGRL2,ADGRL4"
TCGA.CM.4752	1	79295414	119583925	12569	-0.3067	NEUTRAL	NA	236	Too-Many
TCGA.AA.3549	1	79520553	81540434	678	-0.0316	NEUTRAL	NA	0	None
TCGA.AG.4015	1	79966837	83325804	1204	-0.0522	NEUTRAL	NA	1	ADGRL2
TCGA.G4.6322	1	80147006	115348475	10842	0.0158	NEUTRAL	NA	209	Too-Many
TCGA.BM.6198	1	80218573	105657882	7719	0.09365	NEUTRAL	NA	110	Too-Many
TCGA.AG.3591	1	80313429	80329279	6	-0.1062	NEUTRAL	NA	0	None
TCGA.DY.A1H8	1	80596898	168671796	19297	0.0056	NEUTRAL	NA	684	Too-Many
TCGA.AA.3531	1	80606876	249198691	46670	0.0111	NEUTRAL	NA	1195	Too-Many
TCGA.DM.A28H	1	81601263	82298155	282	0.045	NEUTRAL	NA	1	ADGRL2
TCGA.AA.3850	1	81683121	82901263	416	-0.29615	NEUTRAL	NA	1	ADGRL2
TCGA.AZ.6600	1	81737236	145013753	12131	-0.2326	NEUTRAL	NA	256	Too-Many
TCGA.DY.A1DG	1	82285018	199561901	28080	0.0058	NEUTRAL	NA	825	Too-Many
TCGA.AY.A54L.01A	1	82302605	84335606	28	-0.2016	NEUTRAL	NA	2	"ADGRL2,TTLL7"
TCGA.DM.A1DB	1	82315722	82548103	52	0.129	NEUTRAL	NA	1	ADGRL2
TCGA.AG.3906.01A	1	82415844	82453480	20	-0.3767	NEUTRAL	NA	1	ADGRL2
TCGA.AG.3906.01A	1	82455251	90492862	433	-0.0474	NEUTRAL	NA	44	"ADGRL2,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GNG5,GTF2B,HS2ST1,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,ODF2L,PKN2,PRKACB,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TTLL7,WDR63,ZNF326,ZNHIT6"
TCGA.DY.A1DC	1	83227701	102234963	5834	0.0262	NEUTRAL	NA	100	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BARHL2,BCAR3,BCL10,BRDT,BTBD8,C1orf146,C1orf52,CCBL2,CCDC18,CDC14A,CDC7,CLCA1,CLCA2,CLCA4,CNN3,COL24A1,CTBS,CYR61,DBT,DDAH1,DNASE2B,DNTTIP2,DPH5,DPYD,DR1,EPHX4,EVI5,EXTL2,F3,FAM69A,FNBP1L,FRRS1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GCLM,GFI1,GLMN,GNG5,GPR88,GTF2B,HFM1,HIAT1,HS2ST1,KIAA1107,LMO4,LOC101927844,LPAR3,LPPR4,LPPR5,LRRC39,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,MTF2,ODF2L,PALMD,PKN2,PRKACB,PTBP2,RBMXL1,RPAP2,RPF1,RPL5,RTCA,RWDD3,S1PR1,SAMD13,SASS6,SEP15,SETSIP,SH3GLB1,SLC30A7,SLC35A3,SLC44A3,SNX7,SSX2IP,SYDE2,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3,TRMT13,TTLL7,VCAM1,WDR63,ZNF326,ZNF644,ZNHIT6"
TCGA.AG.4015	1	83332241	85434612	751	-0.3513	NEUTRAL	NA	10	"CTBS,DNASE2B,GNG5,LPAR3,MCOLN2,PRKACB,RPF1,SAMD13,SSX2IP,TTLL7"
TCGA.A6.6652	1	83443932	144832254	11489	0.001	NEUTRAL	NA	254	Too-Many
TCGA.AA.3811	1	83834901	88252762	1535	-0.2547	NEUTRAL	NA	28	"BCL10,C1orf52,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GNG5,HS2ST1,LMO4,LOC101927844,LPAR3,MCOLN2,MCOLN3,ODF2L,PRKACB,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TTLL7,WDR63,ZNHIT6"
TCGA.AA.3977	1	83834901	189147125	24684	0.0158	NEUTRAL	NA	796	Too-Many
TCGA.DM.A28H	1	83868725	84086069	64	0.101	NEUTRAL	NA	0	None
TCGA.AA.3850	1	83980081	84437310	197	-0.41185	NEUTRAL	NA	1	TTLL7
TCGA.AA.3982	1	83996452	88343417	1536	-0.1129	NEUTRAL	NA	28	"BCL10,C1orf52,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GNG5,HS2ST1,LMO4,LOC101927844,LPAR3,MCOLN2,MCOLN3,ODF2L,PRKACB,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TTLL7,WDR63,ZNHIT6"
TCGA.AG.A01W.01A	1	84121185	84190375	18	-0.2513	NEUTRAL	NA	0	None
TCGA.AZ.4615	1	84146670	84678259	182	-0.0021	NEUTRAL	NA	2	"PRKACB,TTLL7"
TCGA.AG.A01W.01A	1	84316529	84533228	14	0.1247	NEUTRAL	NA	1	TTLL7
TCGA.AY.A54L.01A	1	84348609	108700042	1222	0.2019	NEUTRAL	NA	113	Too-Many
TCGA.AA.3850	1	84444164	85823119	521	0.05955	NEUTRAL	NA	16	"BCL10,C1orf52,CTBS,DDAH1,DNASE2B,GNG5,LPAR3,MCOLN2,MCOLN3,PRKACB,RPF1,SAMD13,SSX2IP,SYDE2,TTLL7,WDR63"
TCGA.AA.3941	1	84445840	85825877	516	0.1323	NEUTRAL	NA	16	"BCL10,C1orf52,CTBS,DDAH1,DNASE2B,GNG5,LPAR3,MCOLN2,MCOLN3,PRKACB,RPF1,SAMD13,SSX2IP,SYDE2,TTLL7,WDR63"
TCGA.AG.A01W.01A	1	84536480	84894082	45	-0.4117	NEUTRAL	NA	3	"DNASE2B,PRKACB,SAMD13"
TCGA.AZ.4684.01A	1	84679789	86203031	137	0.3698	NEUTRAL	NA	18	"BCL10,C1orf52,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GNG5,LPAR3,MCOLN2,MCOLN3,PRKACB,RPF1,SAMD13,SSX2IP,SYDE2,WDR63,ZNHIT6"
TCGA.AA.3509.01A	1	84679789	86361988	158	-0.4729	NEUTRAL	NA	18	"BCL10,C1orf52,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GNG5,LPAR3,MCOLN2,MCOLN3,PRKACB,RPF1,SAMD13,SSX2IP,SYDE2,WDR63,ZNHIT6"
TCGA.CK.5914.01A	1	84791279	84944916	9	0.2565	NEUTRAL	NA	2	"DNASE2B,SAMD13"
TCGA.AA.3862.01A	1	84880243	91817056	429	0.0465	NEUTRAL	NA	43	"BARHL2,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GNG5,GTF2B,HFM1,HS2ST1,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,ODF2L,PKN2,RBMXL1,RPF1,SEP15,SH3GLB1,SSX2IP,SYDE2,WDR63,ZNF326,ZNF644,ZNHIT6"
TCGA.AG.A01W.01A	1	84907916	89410026	302	-0.2181	NEUTRAL	NA	27	"BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,GNG5,GTF2B,HS2ST1,LMO4,LOC101927844,LPAR3,MCOLN2,MCOLN3,ODF2L,PKN2,RPF1,SEP15,SH3GLB1,SSX2IP,SYDE2,WDR63,ZNHIT6"
TCGA.AZ.4615	1	84956857	90149981	1734	0.0026	NEUTRAL	NA	37	"BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GNG5,GTF2B,HS2ST1,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,MCOLN2,MCOLN3,ODF2L,PKN2,RBMXL1,RPF1,SEP15,SH3GLB1,SSX2IP,SYDE2,WDR63,ZNHIT6"
TCGA.AG.3909.01A	1	84999324	85014457	4	0.1116	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	1	85039891	85431185	28	0.315	NEUTRAL	NA	4	"CTBS,LPAR3,MCOLN2,SSX2IP"
TCGA.AA.3841	1	85070876	159856428	14171	0.0471	NEUTRAL	NA	574	Too-Many
TCGA.AG.3909.01A	1	85096256	85136785	13	-0.2068	NEUTRAL	NA	1	SSX2IP
TCGA.A6.3808.01A	1	85097246	87170522	206	0.3186	NEUTRAL	NA	17	"BCL10,C1orf52,CLCA1,CLCA2,CLCA4,COL24A1,CYR61,DDAH1,LPAR3,MCOLN2,MCOLN3,ODF2L,SH3GLB1,SSX2IP,SYDE2,WDR63,ZNHIT6"
TCGA.AA.A00N.01A	1	85113065	86123492	84	0.0477	NEUTRAL	NA	11	"BCL10,C1orf52,CYR61,DDAH1,LPAR3,MCOLN2,MCOLN3,SSX2IP,SYDE2,WDR63,ZNHIT6"
TCGA.AG.A00C.01A	1	85113065	91851115	398	-0.0573	NEUTRAL	NA	39	"BARHL2,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CYR61,DDAH1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,HFM1,HS2ST1,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,ODF2L,PKN2,RBMXL1,SEP15,SH3GLB1,SSX2IP,SYDE2,WDR63,ZNF326,ZNF644,ZNHIT6"
TCGA.AG.3909.01A	1	85279548	85431185	13	0.2202	NEUTRAL	NA	2	"LPAR3,MCOLN2"
TCGA.AG.4015	1	85436461	85647867	74	0.0766	NEUTRAL	NA	4	"MCOLN2,MCOLN3,SYDE2,WDR63"
TCGA.AG.3909.01A	1	85537567	85647716	27	0.0842	NEUTRAL	NA	2	"SYDE2,WDR63"
TCGA.CK.5914.01A	1	85537567	85647716	27	0.0601	NEUTRAL	NA	2	"SYDE2,WDR63"
TCGA.AG.4015	1	85661441	85967976	116	-0.2908	NEUTRAL	NA	4	"BCL10,C1orf52,DDAH1,SYDE2"
TCGA.AG.3909.01A	1	85741910	86047051	9	0.1494	NEUTRAL	NA	3	"BCL10,CYR61,DDAH1"
TCGA.CK.5914.01A	1	85741910	89598901	240	0.0802	NEUTRAL	NA	22	"BCL10,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CYR61,DDAH1,GBP1,GBP2,GBP3,GBP7,GTF2B,HS2ST1,LMO4,LOC101927844,ODF2L,PKN2,RBMXL1,SEP15,SH3GLB1,ZNHIT6"
TCGA.AA.3850	1	85825877	88292660	813	-0.21585	NEUTRAL	NA	13	"CLCA1,CLCA2,CLCA4,COL24A1,CYR61,DDAH1,HS2ST1,LMO4,LOC101927844,ODF2L,SEP15,SH3GLB1,ZNHIT6"
TCGA.AA.3941	1	85827451	88338184	825	-0.1184	NEUTRAL	NA	13	"CLCA1,CLCA2,CLCA4,COL24A1,CYR61,DDAH1,HS2ST1,LMO4,LOC101927844,ODF2L,SEP15,SH3GLB1,ZNHIT6"
TCGA.DM.A0XF	1	85869502	249198691	44823	0	NEUTRAL	NA	1179	Too-Many
TCGA.AG.4015	1	85972023	86268031	104	0.0259	NEUTRAL	NA	4	"COL24A1,CYR61,DDAH1,ZNHIT6"
TCGA.AZ.6606	1	86008397	145013753	10547	0.0027	NEUTRAL	NA	240	Too-Many
TCGA.AA.A010.01A	1	86047051	87033060	117	-0.0721	NEUTRAL	NA	7	"CLCA1,CLCA2,CLCA4,COL24A1,CYR61,ODF2L,ZNHIT6"
TCGA.AG.3909.01A	1	86119662	89579708	215	-0.1086	NEUTRAL	NA	18	"CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,GBP1,GBP2,GBP3,GTF2B,HS2ST1,LMO4,LOC101927844,ODF2L,PKN2,RBMXL1,SEP15,SH3GLB1,ZNHIT6"
TCGA.AA.3815.01A	1	86251985	86557918	38	-0.3543	NEUTRAL	NA	1	COL24A1
TCGA.AG.4015	1	86283070	91596337	1651	-0.3997	NEUTRAL	NA	27	"BARHL2,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,HS2ST1,LMO4,LOC101927844,LRRC8B,LRRC8C,LRRC8D,ODF2L,PKN2,RBMXL1,SEP15,SH3GLB1,ZNF326,ZNF644"
TCGA.AA.3509.01A	1	86374208	86894053	46	0.1845	NEUTRAL	NA	3	"CLCA2,COL24A1,ODF2L"
TCGA.AA.3815.01A	1	86578190	103354062	884	-0.0407	NEUTRAL	NA	84	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BARHL2,BCAR3,BRDT,BTBD8,C1orf146,CCBL2,CCDC18,CDC14A,CDC7,CLCA1,CLCA2,CLCA4,CNN3,COL11A1,COL24A1,DBT,DNTTIP2,DPH5,DPYD,DR1,EPHX4,EVI5,EXTL2,F3,FAM69A,FNBP1L,FRRS1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GCLM,GFI1,GLMN,GPR88,GTF2B,HFM1,HIAT1,HS2ST1,KIAA1107,LMO4,LOC101927844,LPPR4,LPPR5,LRRC39,LRRC8B,LRRC8C,LRRC8D,MTF2,ODF2L,OLFM3,PALMD,PKN2,PTBP2,RBMXL1,RPAP2,RPL5,RTCA,RWDD3,S1PR1,SASS6,SEP15,SETSIP,SH3GLB1,SLC30A7,SLC35A3,SLC44A3,SNX7,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1,ZNF326,ZNF644"
TCGA.AA.3549	1	86674549	97025707	3147	0.0238	NEUTRAL	NA	59	"ABCA4,ABCD3,ALG14,ARHGAP29,BARHL2,BCAR3,BRDT,BTBD8,C1orf146,CCBL2,CCDC18,CDC7,CLCA1,CLCA2,CLCA4,CNN3,DNTTIP2,DR1,EPHX4,EVI5,F3,FAM69A,FNBP1L,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GCLM,GFI1,GLMN,GTF2B,HFM1,HS2ST1,KIAA1107,LMO4,LOC101927844,LRRC8B,LRRC8C,LRRC8D,MTF2,ODF2L,PKN2,RBMXL1,RPAP2,RPL5,RWDD3,SEP15,SETSIP,SH3GLB1,SLC44A3,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3,ZNF326,ZNF644"
TCGA.F5.6811.01A	1	86805648	86875024	12	0.0373	NEUTRAL	NA	1	ODF2L
TCGA.AA.A00N.01A	1	86848553	86894053	7	-0.209	NEUTRAL	NA	2	"CLCA2,ODF2L"
TCGA.DM.A282.01A	1	86852560	249213943	10718	-0.0044	NEUTRAL	NA	1176	Too-Many
TCGA.F4.6459	1	86876466	89660305	876	-0.0264	NEUTRAL	NA	17	"CCBL2,CLCA1,CLCA2,CLCA4,GBP1,GBP2,GBP3,GBP4,GBP7,GTF2B,HS2ST1,LMO4,LOC101927844,PKN2,RBMXL1,SEP15,SH3GLB1"
TCGA.F5.6811.01A	1	86877087	120736879	2163	-0.3501	NEUTRAL	NA	224	Too-Many
TCGA.AZ.4684.01A	1	86896496	86964207	24	0.3103	NEUTRAL	NA	2	"CLCA1,CLCA2"
TCGA.AA.3509.01A	1	86896496	91383571	211	-0.3801	NEUTRAL	NA	25	"BARHL2,CCBL2,CLCA1,CLCA2,CLCA4,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,HS2ST1,LMO4,LOC101927844,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,SEP15,SH3GLB1,ZNF326,ZNF644"
TCGA.AA.A00N.01A	1	87041024	87633741	37	-0.0544	NEUTRAL	NA	4	"CLCA4,HS2ST1,SEP15,SH3GLB1"
TCGA.AA.A010.01A	1	87099940	87633741	32	-0.1575	NEUTRAL	NA	3	"HS2ST1,SEP15,SH3GLB1"
TCGA.A6.3808.01A	1	87194005	89272944	36	-0.0759	NEUTRAL	NA	6	"HS2ST1,LMO4,LOC101927844,PKN2,SEP15,SH3GLB1"
TCGA.EI.6883	1	87471560	92831568	1696	0.012	NEUTRAL	NA	31	"BARHL2,BRDT,BTBD8,C1orf146,CCBL2,CDC7,EPHX4,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GLMN,GTF2B,HFM1,HS2ST1,KIAA1107,LMO4,LOC101927844,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,RPAP2,SETSIP,TGFBR3,ZNF326,ZNF644"
TCGA.AA.3811	1	88257997	88343417	35	-0.4323	NEUTRAL	NA	0	None
TCGA.AA.3869	1	88257997	145395439	9862	-0.0235	NEUTRAL	NA	230	Too-Many
TCGA.AA.3982	1	88350911	91919609	1082	-0.1845	NEUTRAL	NA	18	"BARHL2,CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,HFM1,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,ZNF326,ZNF644"
TCGA.AA.3872	1	88701608	145013753	9707	-0.2258	NEUTRAL	NA	227	Too-Many
TCGA.AA.3811	1	88825289	91905202	911	-0.2456	NEUTRAL	NA	18	"BARHL2,CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,HFM1,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,ZNF326,ZNF644"
TCGA.AA.3941	1	88855101	91149532	699	-0.113	NEUTRAL	NA	15	"CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,ZNF326"
TCGA.AA.3850	1	89029330	90826393	528	-0.05945	NEUTRAL	NA	15	"CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,ZNF326"
TCGA.AA.A010.01A	1	89150191	90492862	132	0.2027	NEUTRAL	NA	15	"CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,ZNF326"
TCGA.D5.6536	1	89164596	91404529	678	0.0156	NEUTRAL	NA	17	"BARHL2,CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,ZNF326,ZNF644"
TCGA.AF.2693	1	89177746	117121864	8437	0.0123	NEUTRAL	NA	192	Too-Many
TCGA.A6.3808.01A	1	89294145	92224118	180	-0.0013	NEUTRAL	NA	20	"BARHL2,CCBL2,CDC7,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,HFM1,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,TGFBR3,ZNF326,ZNF644"
TCGA.CK.4948.01B	1	89329613	89401797	4	-0.4374	NEUTRAL	NA	2	"CCBL2,GTF2B"
TCGA.DM.A28H	1	89389731	91178649	558	0.0158	NEUTRAL	NA	14	"BARHL2,CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,LRRC8B,LRRC8C,LRRC8D,RBMXL1,ZNF326"
TCGA.CK.4948.01B	1	89408645	169923101	5296	-0.0531	NEUTRAL	NA	666	Too-Many
TCGA.AG.A01W.01A	1	89437010	90236193	36	-0.3171	NEUTRAL	NA	11	"CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,LRRC8B,LRRC8C,RBMXL1"
TCGA.DM.A1DB	1	89490046	90088894	178	0.0214	NEUTRAL	NA	7	"GBP1,GBP2,GBP4,GBP5,GBP6,GBP7,LRRC8B"
TCGA.AA.A00N.01A	1	89573840	89579708	5	-0.4412	NEUTRAL	NA	1	GBP2
TCGA.AA.A00F.01A	1	89573840	89613209	14	-0.0461	NEUTRAL	NA	2	"GBP2,GBP7"
TCGA.AA.A00N.01A	1	89607177	89617919	5	0.1142	NEUTRAL	NA	1	GBP7
TCGA.AG.3909.01A	1	89607177	89617919	5	-0.1323	NEUTRAL	NA	1	GBP7
TCGA.AA.A00F.01A	1	89614972	91845614	84	-0.3103	NEUTRAL	NA	11	"BARHL2,GBP4,GBP5,GBP6,GBP7,HFM1,LRRC8B,LRRC8C,LRRC8D,ZNF326,ZNF644"
TCGA.AG.3909.01A	1	89618301	89664421	14	0.2874	NEUTRAL	NA	2	"GBP4,GBP7"
TCGA.CK.5914.01A	1	89662791	89734999	12	-0.4822	NEUTRAL	NA	2	"GBP4,GBP5"
TCGA.F4.6459	1	89673298	188325003	22564	0.3401	NEUTRAL	NA	759	Too-Many
TCGA.AA.A00N.01A	1	89726338	89734999	10	0.2599	NEUTRAL	NA	1	GBP5
TCGA.AG.3909.01A	1	89726338	89734999	10	-0.4166	NEUTRAL	NA	1	GBP5
TCGA.AA.A00A.01A	1	89731982	92262824	93	-0.4859	NEUTRAL	NA	11	"BARHL2,CDC7,GBP5,GBP6,HFM1,LRRC8B,LRRC8C,LRRC8D,TGFBR3,ZNF326,ZNF644"
TCGA.AG.3909.01A	1	89834059	90400050	20	0.1896	NEUTRAL	NA	4	"GBP6,LRRC8B,LRRC8C,LRRC8D"
TCGA.AA.A01I.01A	1	89845903	109824200	937	-0.0584	NEUTRAL	NA	93	"ABCA4,ABCD3,AGL,AKNAD1,ALG14,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,ARHGAP29,BARHL2,BCAR3,BRDT,BTBD8,C1orf146,C1orf194,CCDC18,CDC14A,CDC7,CELSR2,CLCC1,CNN3,COL11A1,DBT,DNTTIP2,DPH5,DPYD,DR1,EPHX4,EVI5,EXTL2,F3,FAM102B,FAM69A,FNBP1L,FNDC7,FRRS1,GBP6,GCLM,GFI1,GLMN,GPR88,GPSM2,HENMT1,HFM1,HIAT1,KIAA1107,KIAA1324,LOC101928436,LPPR4,LPPR5,LRRC39,LRRC8B,LRRC8C,LRRC8D,MTF2,NBPF4,NBPF6,NTNG1,OLFM3,PALMD,PRMT6,PRPF38B,PSRC1,PTBP2,RNPC3,RPAP2,RPL5,RTCA,RWDD3,S1PR1,SARS,SASS6,SETSIP,SLC25A24,SLC30A7,SLC35A3,SLC44A3,SNX7,STXBP3,TAF13,TGFBR3,TMED5,TMEM167B,TMEM56,TMEM56-RWDD3,TRMT13,VAV3,VCAM1,WDR47,ZNF326,ZNF644"
TCGA.CK.5914.01A	1	90058319	91989589	69	-0.1977	NEUTRAL	NA	8	"BARHL2,CDC7,HFM1,LRRC8B,LRRC8C,LRRC8D,ZNF326,ZNF644"
TCGA.AG.A01W.01A	1	90243069	91156151	15	0.1239	NEUTRAL	NA	2	"LRRC8D,ZNF326"
TCGA.AA.A00N.01A	1	90401439	91846448	48	-0.1123	NEUTRAL	NA	5	"BARHL2,HFM1,LRRC8D,ZNF326,ZNF644"
TCGA.AG.3909.01A	1	90486303	91851115	41	-0.1828	NEUTRAL	NA	4	"BARHL2,HFM1,ZNF326,ZNF644"
TCGA.AA.3850	1	91053706	91418025	125	-0.15975	NEUTRAL	NA	2	"BARHL2,ZNF644"
TCGA.AA.3941	1	91149928	91395266	77	0.1521	NEUTRAL	NA	2	"BARHL2,ZNF644"
TCGA.AG.A01W.01A	1	91175579	91585517	33	-0.3245	NEUTRAL	NA	2	"BARHL2,ZNF644"
TCGA.AG.3611.01A	1	91177942	110217315	926	0.0626	NEUTRAL	NA	101	Too-Many
TCGA.AG.3906.01A	1	91382307	92495586	81	-0.0854	NEUTRAL	NA	6	"BRDT,CDC7,EPHX4,HFM1,TGFBR3,ZNF644"
TCGA.AA.3941	1	91432908	91917727	119	0.3402	NEUTRAL	NA	2	"HFM1,ZNF644"
TCGA.AA.3850	1	91432908	95728870	1261	0.21795	NEUTRAL	NA	34	"ABCA4,ABCD3,ALG14,ARHGAP29,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,CDC7,CNN3,DNTTIP2,DR1,EPHX4,EVI5,F3,FAM69A,FNBP1L,GCLM,GFI1,GLMN,HFM1,KIAA1107,MTF2,RPAP2,RPL5,RWDD3,SETSIP,SLC44A3,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3,ZNF644"
TCGA.AG.A01W.01A	1	91588832	91618203	9	0.3333	NEUTRAL	NA	0	None
TCGA.AG.4015	1	91599361	91813718	63	0.0624	NEUTRAL	NA	1	HFM1
TCGA.AG.A01W.01A	1	91619046	91739813	7	-0.1838	NEUTRAL	NA	1	HFM1
TCGA.AA.3509.01A	1	91731519	91808931	13	-0.1969	NEUTRAL	NA	1	HFM1
TCGA.AA.A010.01A	1	91739229	91989589	38	-0.3643	NEUTRAL	NA	2	"CDC7,HFM1"
TCGA.AG.A01W.01A	1	91753882	91958002	11	-0.1733	NEUTRAL	NA	1	HFM1
TCGA.DM.A28M.01A	1	91844593	104166441	689	0.2776	NEUTRAL	NA	61	"ABCA4,ABCD3,AGL,ALG14,AMY2A,AMY2B,ARHGAP29,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,CDC14A,CDC7,CNN3,COL11A1,DBT,DNTTIP2,DPH5,DPYD,DR1,EPHX4,EVI5,EXTL2,F3,FAM69A,FNBP1L,FRRS1,GCLM,GFI1,GLMN,GPR88,HFM1,HIAT1,KIAA1107,LOC101928436,LPPR4,LPPR5,LRRC39,MTF2,OLFM3,PALMD,PTBP2,RNPC3,RPAP2,RPL5,RTCA,RWDD3,S1PR1,SASS6,SETSIP,SLC30A7,SLC35A3,SLC44A3,SNX7,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
TCGA.AA.A00F.01A	1	91846448	91989589	16	0.0973	NEUTRAL	NA	2	"CDC7,HFM1"
TCGA.AG.4015	1	91848783	92831568	311	-0.3937	NEUTRAL	NA	11	"BRDT,BTBD8,C1orf146,CDC7,EPHX4,GLMN,HFM1,KIAA1107,RPAP2,SETSIP,TGFBR3"
TCGA.AA.3844	1	91933105	93986216	458	0.0041	NEUTRAL	NA	19	"BRDT,BTBD8,C1orf146,CCDC18,CDC7,DR1,EPHX4,EVI5,FAM69A,FNBP1L,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TGFBR3,TMED5"
TCGA.AA.3941	1	91933105	93986216	459	0.3278	NEUTRAL	NA	19	"BRDT,BTBD8,C1orf146,CCDC18,CDC7,DR1,EPHX4,EVI5,FAM69A,FNBP1L,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TGFBR3,TMED5"
TCGA.AA.3982	1	91933105	95948065	1222	0.098	NEUTRAL	NA	32	"ABCA4,ABCD3,ALG14,ARHGAP29,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,CDC7,CNN3,DNTTIP2,DR1,EPHX4,EVI5,F3,FAM69A,FNBP1L,GCLM,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,RWDD3,SETSIP,SLC44A3,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3"
TCGA.AA.3811	1	91938723	95969034	1221	-0.0559	NEUTRAL	NA	32	"ABCA4,ABCD3,ALG14,ARHGAP29,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,CDC7,CNN3,DNTTIP2,DR1,EPHX4,EVI5,F3,FAM69A,FNBP1L,GCLM,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,RWDD3,SETSIP,SLC44A3,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3"
TCGA.AA.A00D.01A	1	91967224	91989589	10	0.1463	NEUTRAL	NA	1	CDC7
TCGA.AA.A00L.01A	1	91973353	120547923	1772	-0.4939	NEUTRAL	NA	198	Too-Many
TCGA.AG.A01L.01A	1	91989589	110230415	958	-0.0978	NEUTRAL	NA	98	"ABCA4,ABCD3,AGL,AKNAD1,ALG14,AMIGO1,AMPD2,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,ARHGAP29,ATXN7L2,BCAR3,BRDT,BTBD8,C1orf146,C1orf194,CCDC18,CDC14A,CDC7,CELSR2,CLCC1,CNN3,COL11A1,CYB561D1,DBT,DNTTIP2,DPH5,DPYD,DR1,EPHX4,EVI5,EXTL2,F3,FAM102B,FAM69A,FNBP1L,FNDC7,FRRS1,GCLM,GFI1,GLMN,GNAI3,GNAT2,GPR61,GPR88,GPSM2,GSTM2,GSTM4,HENMT1,HIAT1,KIAA1107,KIAA1324,LOC101928436,LPPR4,LPPR5,LRRC39,MTF2,MYBPHL,NBPF4,NBPF6,NTNG1,OLFM3,PALMD,PRMT6,PRPF38B,PSMA5,PSRC1,PTBP2,RNPC3,RPAP2,RPL5,RTCA,RWDD3,S1PR1,SARS,SASS6,SETSIP,SLC25A24,SLC30A7,SLC35A3,SLC44A3,SNX7,SORT1,STXBP3,SYPL2,TAF13,TGFBR3,TMED5,TMEM167B,TMEM56,TMEM56-RWDD3,TRMT13,VAV3,VCAM1,WDR47"
TCGA.DM.A28H	1	92041514	228968183	35046	0.0078	NEUTRAL	NA	1008	Too-Many
TCGA.AG.3732	1	92061444	144876744	8642	0.0205	NEUTRAL	NA	208	Too-Many
TCGA.AA.A00F.01A	1	92149259	92754420	68	-0.2762	NEUTRAL	NA	8	"BRDT,BTBD8,C1orf146,EPHX4,GLMN,KIAA1107,SETSIP,TGFBR3"
TCGA.AA.A00D.01A	1	92149259	94502223	179	-0.4743	NEUTRAL	NA	22	"ABCA4,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,DNTTIP2,DR1,EPHX4,EVI5,FAM69A,FNBP1L,GCLM,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TGFBR3,TMED5"
TCGA.AG.A00C.01A	1	92149259	94980644	290	-0.1078	NEUTRAL	NA	24	"ABCA4,ABCD3,ARHGAP29,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,DNTTIP2,DR1,EPHX4,EVI5,FAM69A,FNBP1L,GCLM,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TGFBR3,TMED5"
TCGA.AZ.4684.01A	1	92161202	93987569	177	0.2354	NEUTRAL	NA	18	"BRDT,BTBD8,C1orf146,CCDC18,DR1,EPHX4,EVI5,FAM69A,FNBP1L,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TGFBR3,TMED5"
TCGA.AG.3580	1	92202434	249198691	42791	0.0006	NEUTRAL	NA	1147	Too-Many
TCGA.AG.A01W.01A	1	92216286	92529515	64	-0.187	NEUTRAL	NA	3	"BRDT,EPHX4,TGFBR3"
TCGA.AA.A00Q.01A	1	92224118	92470668	19	-0.3644	NEUTRAL	NA	2	"BRDT,TGFBR3"
TCGA.AZ.4615	1	92241730	97286509	1421	0.0465	NEUTRAL	NA	32	"ABCA4,ABCD3,ALG14,ARHGAP29,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,CNN3,DNTTIP2,DR1,EPHX4,EVI5,F3,FAM69A,FNBP1L,GCLM,GFI1,GLMN,KIAA1107,MTF2,PTBP2,RPAP2,RPL5,RWDD3,SETSIP,SLC44A3,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3"
TCGA.AG.3909.01A	1	92326962	92459593	14	0.0122	NEUTRAL	NA	2	"BRDT,TGFBR3"
TCGA.AA.A00A.01A	1	92326962	92479698	18	-0.0551	NEUTRAL	NA	2	"BRDT,TGFBR3"
TCGA.CK.5914.01A	1	92428273	92511060	21	-0.4916	NEUTRAL	NA	2	"BRDT,EPHX4"
TCGA.AG.3891.01A	1	92428273	92518015	23	0.1526	NEUTRAL	NA	2	"BRDT,EPHX4"
TCGA.AA.3861.01A	1	92479698	93649518	118	-0.1328	NEUTRAL	NA	15	"BRDT,BTBD8,C1orf146,CCDC18,EPHX4,EVI5,FAM69A,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TMED5"
TCGA.AA.3862.01A	1	92479698	93649518	118	-0.2588	NEUTRAL	NA	15	"BRDT,BTBD8,C1orf146,CCDC18,EPHX4,EVI5,FAM69A,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TMED5"
TCGA.A6.3808.01A	1	92479698	93651860	116	0.2331	NEUTRAL	NA	15	"BRDT,BTBD8,C1orf146,CCDC18,EPHX4,EVI5,FAM69A,GFI1,GLMN,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TMED5"
TCGA.AA.A00A.01A	1	92495586	93168934	72	-0.5003	NEUTRAL	NA	9	"BTBD8,C1orf146,EPHX4,EVI5,GFI1,GLMN,KIAA1107,RPAP2,SETSIP"
TCGA.CK.5914.01A	1	92515827	92736985	37	0.0406	NEUTRAL	NA	6	"BTBD8,C1orf146,EPHX4,GLMN,KIAA1107,SETSIP"
TCGA.AG.3909.01A	1	92528565	92736985	27	0.0314	NEUTRAL	NA	6	"BTBD8,C1orf146,EPHX4,GLMN,KIAA1107,SETSIP"
TCGA.AA.A010.01A	1	92528565	92852517	54	0.3569	NEUTRAL	NA	7	"BTBD8,C1orf146,EPHX4,GLMN,KIAA1107,RPAP2,SETSIP"
TCGA.AG.3891.01A	1	92528565	100661781	446	-0.1294	NEUTRAL	NA	43	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BCAR3,BTBD8,C1orf146,CCDC18,CNN3,DBT,DNTTIP2,DPYD,DR1,EPHX4,EVI5,F3,FAM69A,FNBP1L,FRRS1,GCLM,GFI1,GLMN,HIAT1,KIAA1107,LPPR4,LPPR5,LRRC39,MTF2,PALMD,PTBP2,RPAP2,RPL5,RWDD3,SASS6,SETSIP,SLC35A3,SLC44A3,SNX7,TMED5,TMEM56,TMEM56-RWDD3,TRMT13"
TCGA.AG.3906.01A	1	92528565	100661781	441	-0.0352	NEUTRAL	NA	43	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BCAR3,BTBD8,C1orf146,CCDC18,CNN3,DBT,DNTTIP2,DPYD,DR1,EPHX4,EVI5,F3,FAM69A,FNBP1L,FRRS1,GCLM,GFI1,GLMN,HIAT1,KIAA1107,LPPR4,LPPR5,LRRC39,MTF2,PALMD,PTBP2,RPAP2,RPL5,RWDD3,SASS6,SETSIP,SLC35A3,SLC44A3,SNX7,TMED5,TMEM56,TMEM56-RWDD3,TRMT13"
TCGA.AG.A01W.01A	1	92542076	101134674	469	-0.22	NEUTRAL	NA	44	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BCAR3,BTBD8,C1orf146,CCDC18,CDC14A,CNN3,DBT,DNTTIP2,DPYD,DR1,EVI5,F3,FAM69A,FNBP1L,FRRS1,GCLM,GFI1,GLMN,GPR88,HIAT1,KIAA1107,LPPR4,LPPR5,LRRC39,MTF2,PALMD,PTBP2,RPAP2,RPL5,RTCA,RWDD3,SASS6,SLC35A3,SLC44A3,SNX7,TMED5,TMEM56,TMEM56-RWDD3,TRMT13"
TCGA.AA.A00F.01A	1	92755703	92772688	10	0.1086	NEUTRAL	NA	2	"GLMN,RPAP2"
TCGA.CK.5914.01A	1	92786114	93545010	44	-0.2129	NEUTRAL	NA	6	"EVI5,FAM69A,GFI1,MTF2,RPAP2,RPL5"
TCGA.AA.A00N.01A	1	92786114	93602209	56	0.3741	NEUTRAL	NA	6	"EVI5,FAM69A,GFI1,MTF2,RPAP2,RPL5"
TCGA.AG.3909.01A	1	92786114	93646076	61	-0.0993	NEUTRAL	NA	7	"EVI5,FAM69A,GFI1,MTF2,RPAP2,RPL5,TMED5"
TCGA.AA.A00F.01A	1	92786114	113162410	1068	-0.2052	NEUTRAL	NA	130	Too-Many
TCGA.AG.4015	1	92863972	92947137	21	0.0607	NEUTRAL	NA	1	GFI1
TCGA.AG.4015	1	92954527	94082916	183	-0.3012	NEUTRAL	NA	9	"BCAR3,CCDC18,DR1,EVI5,FAM69A,FNBP1L,MTF2,RPL5,TMED5"
TCGA.AA.A00A.01A	1	93170074	93580980	18	-0.1222	NEUTRAL	NA	4	"EVI5,FAM69A,MTF2,RPL5"
TCGA.AG.3909.01A	1	93659121	94370015	64	-0.154	NEUTRAL	NA	6	"BCAR3,CCDC18,DNTTIP2,DR1,FNBP1L,GCLM"
TCGA.AA.A00N.01A	1	93667396	93683247	8	0.138	NEUTRAL	NA	1	CCDC18
TCGA.CK.5914.01A	1	93676311	93735878	18	-0.0435	NEUTRAL	NA	1	CCDC18
TCGA.EI.6883	1	93704325	97378331	1180	0.0014	NEUTRAL	NA	17	"ABCA4,ABCD3,ALG14,ARHGAP29,BCAR3,CCDC18,CNN3,DNTTIP2,DR1,F3,FNBP1L,GCLM,PTBP2,RWDD3,SLC44A3,TMEM56,TMEM56-RWDD3"
TCGA.CK.5914.01A	1	93743937	93987569	7	-0.4862	NEUTRAL	NA	3	"CCDC18,DR1,FNBP1L"
TCGA.A6.3808.01A	1	93988859	103355933	418	0.3647	NEUTRAL	NA	38	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BCAR3,CDC14A,CNN3,COL11A1,DBT,DNTTIP2,DPH5,DPYD,EXTL2,F3,FNBP1L,FRRS1,GCLM,GPR88,HIAT1,LPPR4,LPPR5,LRRC39,OLFM3,PALMD,PTBP2,RTCA,RWDD3,S1PR1,SASS6,SLC30A7,SLC35A3,SLC44A3,SNX7,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
TCGA.AZ.4684.01A	1	94014798	94312331	16	0.0043	NEUTRAL	NA	2	"BCAR3,FNBP1L"
TCGA.AA.3862.01A	1	94014798	103348703	406	-0.3754	NEUTRAL	NA	38	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BCAR3,CDC14A,CNN3,COL11A1,DBT,DNTTIP2,DPH5,DPYD,EXTL2,F3,FNBP1L,FRRS1,GCLM,GPR88,HIAT1,LPPR4,LPPR5,LRRC39,OLFM3,PALMD,PTBP2,RTCA,RWDD3,S1PR1,SASS6,SLC30A7,SLC35A3,SLC44A3,SNX7,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
TCGA.AA.3861.01A	1	94014798	103354961	410	-0.1183	NEUTRAL	NA	38	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BCAR3,CDC14A,CNN3,COL11A1,DBT,DNTTIP2,DPH5,DPYD,EXTL2,F3,FNBP1L,FRRS1,GCLM,GPR88,HIAT1,LPPR4,LPPR5,LRRC39,OLFM3,PALMD,PTBP2,RTCA,RWDD3,S1PR1,SASS6,SLC30A7,SLC35A3,SLC44A3,SNX7,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
TCGA.AA.3844	1	94026860	94635027	257	0.1256	NEUTRAL	NA	5	"ABCA4,ARHGAP29,BCAR3,DNTTIP2,GCLM"
TCGA.AG.4015	1	94088362	94275907	68	0.0285	NEUTRAL	NA	1	BCAR3
TCGA.AA.A010.01A	1	94140123	94344579	10	-0.3171	NEUTRAL	NA	2	"BCAR3,DNTTIP2"
TCGA.AG.4015	1	94281596	94988943	240	-0.3647	NEUTRAL	NA	6	"ABCA4,ABCD3,ARHGAP29,BCAR3,DNTTIP2,GCLM"
TCGA.AG.4009.01A	1	94337579	94461620	14	-0.4721	NEUTRAL	NA	3	"ABCA4,DNTTIP2,GCLM"
TCGA.AZ.4684.01A	1	94338626	94650860	67	0.0935	NEUTRAL	NA	4	"ABCA4,ARHGAP29,DNTTIP2,GCLM"
TCGA.AG.4009.01A	1	94463366	94586502	46	0.3397	NEUTRAL	NA	1	ABCA4
TCGA.AA.3930.01A	1	94481244	94578479	35	-0.0832	NEUTRAL	NA	1	ABCA4
TCGA.CK.5914.01A	1	94487137	94502671	9	-0.0725	NEUTRAL	NA	1	ABCA4
TCGA.AA.A010.01A	1	94526045	94548875	8	-0.087	NEUTRAL	NA	1	ABCA4
TCGA.CK.5914.01A	1	94568524	94650860	13	0.1284	NEUTRAL	NA	2	"ABCA4,ARHGAP29"
TCGA.AA.3930.01A	1	94586502	95286453	47	-0.4575	NEUTRAL	NA	5	"ABCA4,ABCD3,ARHGAP29,F3,SLC44A3"
TCGA.AA.3941	1	94614024	94988943	84	-0.0714	NEUTRAL	NA	2	"ABCD3,ARHGAP29"
TCGA.AA.3844	1	94638710	94988943	78	-0.3098	NEUTRAL	NA	2	"ABCD3,ARHGAP29"
TCGA.AG.4009.01A	1	94639422	94674337	19	-0.0401	NEUTRAL	NA	1	ARHGAP29
TCGA.AA.A010.01A	1	94639422	100553644	211	-0.0383	NEUTRAL	NA	20	"ABCD3,AGL,ALG14,ARHGAP29,CNN3,DPYD,F3,FRRS1,HIAT1,LPPR4,LPPR5,PALMD,PTBP2,RWDD3,SASS6,SLC35A3,SLC44A3,SNX7,TMEM56,TMEM56-RWDD3"
TCGA.AG.3909.01A	1	94649660	94982549	34	-0.0992	NEUTRAL	NA	2	"ABCD3,ARHGAP29"
TCGA.CK.5914.01A	1	94652014	94924140	16	-0.3515	NEUTRAL	NA	2	"ABCD3,ARHGAP29"
TCGA.AA.3509.01A	1	94652014	108786158	449	-0.3353	NEUTRAL	NA	45	"ABCD3,AGL,ALG14,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,ARHGAP29,CDC14A,CNN3,COL11A1,DBT,DPH5,DPYD,EXTL2,F3,FRRS1,GPR88,HIAT1,LOC101928436,LPPR4,LPPR5,LRRC39,NBPF4,NTNG1,OLFM3,PALMD,PRMT6,PTBP2,RNPC3,RTCA,RWDD3,S1PR1,SASS6,SLC25A24,SLC30A7,SLC35A3,SLC44A3,SNX7,TMEM56,TMEM56-RWDD3,TRMT13,VAV3,VCAM1"
TCGA.AG.4009.01A	1	94924140	94982549	17	0.0219	NEUTRAL	NA	1	ABCD3
TCGA.AG.A00C.01A	1	94982549	95303220	10	0.3499	NEUTRAL	NA	3	"ABCD3,F3,SLC44A3"
TCGA.AG.4015	1	94989776	95284630	179	0.1112	NEUTRAL	NA	1	F3
TCGA.AA.3941	1	94989776	95728870	334	0.3159	NEUTRAL	NA	7	"ALG14,CNN3,F3,RWDD3,SLC44A3,TMEM56,TMEM56-RWDD3"
TCGA.AA.3844	1	94989776	95746348	342	0.061	NEUTRAL	NA	7	"ALG14,CNN3,F3,RWDD3,SLC44A3,TMEM56,TMEM56-RWDD3"
TCGA.CK.5914.01A	1	94995999	97250577	47	-0.089	NEUTRAL	NA	8	"ALG14,CNN3,F3,PTBP2,RWDD3,SLC44A3,TMEM56,TMEM56-RWDD3"
TCGA.AZ.4684.01A	1	94995999	100464770	151	0.1741	NEUTRAL	NA	16	"AGL,ALG14,CNN3,DPYD,F3,FRRS1,LPPR4,LPPR5,PALMD,PTBP2,RWDD3,SLC35A3,SLC44A3,SNX7,TMEM56,TMEM56-RWDD3"
TCGA.AG.4015	1	95287079	97781038	732	-0.3732	NEUTRAL	NA	8	"ALG14,CNN3,DPYD,PTBP2,RWDD3,SLC44A3,TMEM56,TMEM56-RWDD3"
TCGA.AA.3930.01A	1	95290037	95538271	24	-0.109	NEUTRAL	NA	3	"ALG14,CNN3,SLC44A3"
TCGA.AG.4009.01A	1	95303220	95322860	5	-0.2303	NEUTRAL	NA	1	SLC44A3
TCGA.AG.3909.01A	1	95303220	95657129	27	0.0883	NEUTRAL	NA	5	"ALG14,CNN3,SLC44A3,TMEM56,TMEM56-RWDD3"
TCGA.AA.A00N.01A	1	95305450	95699741	27	0.1023	NEUTRAL	NA	6	"ALG14,CNN3,RWDD3,SLC44A3,TMEM56,TMEM56-RWDD3"
TCGA.AG.A00C.01A	1	95305450	97243102	32	0.0157	NEUTRAL	NA	7	"ALG14,CNN3,PTBP2,RWDD3,SLC44A3,TMEM56,TMEM56-RWDD3"
TCGA.AG.4009.01A	1	95330272	95538271	15	0.0992	NEUTRAL	NA	3	"ALG14,CNN3,SLC44A3"
TCGA.AF.A56K	1	95348669	226036308	33258	-0.0043	NEUTRAL	NA	948	Too-Many
TCGA.DM.A1D9	1	95473440	144901892	7661	0.006	NEUTRAL	NA	181	Too-Many
TCGA.AG.4009.01A	1	95609410	95712050	8	-0.1404	NEUTRAL	NA	3	"RWDD3,TMEM56,TMEM56-RWDD3"
TCGA.AA.3930.01A	1	95609410	102271580	250	-0.4959	NEUTRAL	NA	26	"AGL,CDC14A,DBT,DPH5,DPYD,EXTL2,FRRS1,GPR88,HIAT1,LPPR4,LPPR5,LRRC39,OLFM3,PALMD,PTBP2,RTCA,RWDD3,S1PR1,SASS6,SLC30A7,SLC35A3,SNX7,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
TCGA.AA.3941	1	95735493	95815454	46	-0.4432	NEUTRAL	NA	0	None
TCGA.AA.3844	1	95781631	95955268	71	-0.1468	NEUTRAL	NA	0	None
TCGA.AA.3848	1	95829157	98240826	618	-0.1374	NEUTRAL	NA	2	"DPYD,PTBP2"
TCGA.AA.3941	1	95830429	95868210	12	-0.3389	NEUTRAL	NA	0	None
TCGA.AA.3941	1	95872371	95902979	12	0.1986	NEUTRAL	NA	0	None
TCGA.AA.3941	1	95903026	108270129	3427	-0.5144	NEUTRAL	NA	34	"AGL,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,DPYD,EXTL2,FRRS1,GPR88,HIAT1,LOC101928436,LPPR4,LPPR5,LRRC39,NTNG1,OLFM3,PALMD,PRMT6,PTBP2,RNPC3,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,SNX7,TRMT13,VAV3,VCAM1"
TCGA.AA.3982	1	95955268	108270129	3412	-0.4613	NEUTRAL	NA	34	"AGL,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,DPYD,EXTL2,FRRS1,GPR88,HIAT1,LOC101928436,LPPR4,LPPR5,LRRC39,NTNG1,OLFM3,PALMD,PRMT6,PTBP2,RNPC3,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,SNX7,TRMT13,VAV3,VCAM1"
TCGA.AA.3844	1	95956362	99963686	1076	-0.4675	NEUTRAL	NA	5	"DPYD,LPPR4,LPPR5,PTBP2,SNX7"
TCGA.AG.3909.01A	1	97250577	100214078	70	0.0754	NEUTRAL	NA	7	"DPYD,FRRS1,LPPR4,LPPR5,PALMD,PTBP2,SNX7"
TCGA.AG.A00C.01A	1	97250577	100214078	70	-0.2625	NEUTRAL	NA	7	"DPYD,FRRS1,LPPR4,LPPR5,PALMD,PTBP2,SNX7"
TCGA.AG.4009.01A	1	97250577	100661781	152	-0.063	NEUTRAL	NA	14	"AGL,DBT,DPYD,FRRS1,HIAT1,LPPR4,LPPR5,LRRC39,PALMD,PTBP2,SASS6,SLC35A3,SNX7,TRMT13"
TCGA.AG.3727	1	97635211	197546425	22693	0.0035	NEUTRAL	NA	740	Too-Many
TCGA.AH.6549.01A	1	97658578	98060608	12	-0.2367	NEUTRAL	NA	1	DPYD
TCGA.AG.4015	1	97797969	98242095	91	-0.0627	NEUTRAL	NA	1	DPYD
TCGA.AH.6549.01A	1	98144623	172356226	4924	0.1174	NEUTRAL	NA	630	Too-Many
TCGA.AA.3848	1	98242095	145394954	6948	-0.488	NEUTRAL	NA	179	Too-Many
TCGA.AG.4015	1	98242876	109077022	3054	-0.4019	NEUTRAL	NA	36	"AGL,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,DPYD,EXTL2,FRRS1,GPR88,HIAT1,LOC101928436,LPPR4,LPPR5,LRRC39,NBPF4,NBPF6,NTNG1,OLFM3,PALMD,PRMT6,RNPC3,RTCA,S1PR1,SASS6,SLC25A24,SLC30A7,SLC35A3,SNX7,TRMT13,VAV3,VCAM1"
TCGA.EI.6883	1	98359341	102918492	1438	-0.0135	NEUTRAL	NA	22	"AGL,CDC14A,DBT,DPH5,DPYD,EXTL2,FRRS1,GPR88,HIAT1,LPPR4,LPPR5,LRRC39,OLFM3,PALMD,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,SNX7,TRMT13,VCAM1"
TCGA.CM.6677	1	99207577	249198691	40714	0.0265	NEUTRAL	NA	1114	Too-Many
TCGA.AA.3850	1	99902165	101987319	647	-0.15015	NEUTRAL	NA	17	"AGL,CDC14A,DBT,DPH5,EXTL2,FRRS1,GPR88,HIAT1,LRRC39,PALMD,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,TRMT13,VCAM1"
TCGA.AA.3844	1	99966855	100930253	263	-0.0282	NEUTRAL	NA	11	"AGL,CDC14A,DBT,FRRS1,HIAT1,LRRC39,PALMD,RTCA,SASS6,SLC35A3,TRMT13"
TCGA.AG.3881	1	100022917	101786420	522	-0.2833	NEUTRAL	NA	17	"AGL,CDC14A,DBT,DPH5,EXTL2,FRRS1,GPR88,HIAT1,LRRC39,PALMD,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,TRMT13,VCAM1"
TCGA.AA.3811	1	100022917	101890431	557	-0.1978	NEUTRAL	NA	17	"AGL,CDC14A,DBT,DPH5,EXTL2,FRRS1,GPR88,HIAT1,LRRC39,PALMD,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,TRMT13,VCAM1"
TCGA.CK.5914.01A	1	100194041	100214078	7	-0.0953	NEUTRAL	NA	1	FRRS1
TCGA.CK.5914.01A	1	100335918	100503734	33	0.1831	NEUTRAL	NA	2	"AGL,SLC35A3"
TCGA.AA.A00N.01A	1	100340251	100661781	76	0.3242	NEUTRAL	NA	7	"AGL,DBT,HIAT1,LRRC39,SASS6,SLC35A3,TRMT13"
TCGA.AG.A00C.01A	1	100343195	100661781	70	-0.1103	NEUTRAL	NA	7	"AGL,DBT,HIAT1,LRRC39,SASS6,SLC35A3,TRMT13"
TCGA.AG.3909.01A	1	100361790	100480806	14	-0.1961	NEUTRAL	NA	2	"AGL,SLC35A3"
TCGA.AZ.4684.01A	1	100472553	103488261	184	-0.2729	NEUTRAL	NA	16	"CDC14A,COL11A1,DBT,DPH5,EXTL2,GPR88,HIAT1,LRRC39,OLFM3,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,TRMT13,VCAM1"
TCGA.AG.3909.01A	1	100527344	100661781	42	-0.0143	NEUTRAL	NA	5	"DBT,HIAT1,LRRC39,SASS6,TRMT13"
TCGA.AA.A01K.01A	1	100535104	108690850	242	-0.1572	NEUTRAL	NA	26	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,EXTL2,GPR88,HIAT1,LOC101928436,LRRC39,NTNG1,OLFM3,PRMT6,RNPC3,RTCA,S1PR1,SASS6,SLC25A24,SLC30A7,TRMT13,VAV3,VCAM1"
TCGA.CK.5914.01A	1	100542709	100572901	10	0.1297	NEUTRAL	NA	2	"HIAT1,SASS6"
TCGA.AG.A00H.01A	1	100542709	111970232	690	-0.1221	NEUTRAL	NA	84	"AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,ATXN7L2,C1orf194,CD53,CDC14A,CELSR2,CEPT1,CHI3L2,CHIA,CLCC1,COL11A1,CSF1,CYB561D1,DBT,DENND2D,DPH5,DRAM2,EPS8L3,EXTL2,FAM102B,FNDC7,GNAI3,GNAT2,GPR61,GPR88,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,HIAT1,KCNA10,KCNA2,KCNA3,KCNC4,KIAA1324,LAMTOR5,LOC101928436,LRIF1,LRRC39,MYBPHL,NBPF4,NBPF6,NTNG1,OLFM3,OVGP1,PIFO,PRMT6,PROK1,PRPF38B,PSMA5,PSRC1,RBM15,RNPC3,RTCA,S1PR1,SARS,SASS6,SLC16A4,SLC25A24,SLC30A7,SLC6A17,SORT1,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,TRMT13,UBL4B,VAV3,VCAM1,WDR47"
TCGA.CK.5914.01A	1	100575801	100819264	54	-0.5145	NEUTRAL	NA	6	"CDC14A,DBT,LRRC39,RTCA,SASS6,TRMT13"
TCGA.AG.3891.01A	1	100671725	100684135	7	0.3541	NEUTRAL	NA	1	DBT
TCGA.AG.A00C.01A	1	100671725	100700948	9	0.374	NEUTRAL	NA	1	DBT
TCGA.AG.3909.01A	1	100696252	100819264	17	-0.3002	NEUTRAL	NA	3	"CDC14A,DBT,RTCA"
TCGA.AA.A00N.01A	1	100696252	101203628	44	0.3053	NEUTRAL	NA	5	"CDC14A,DBT,GPR88,RTCA,VCAM1"
TCGA.AG.3906.01A	1	100696252	101343064	43	0.0397	NEUTRAL	NA	6	"CDC14A,DBT,EXTL2,GPR88,RTCA,VCAM1"
TCGA.AA.A01Q.01A	1	100696252	108321989	173	-0.0684	NEUTRAL	NA	21	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,EXTL2,GPR88,LOC101928436,NTNG1,OLFM3,PRMT6,RNPC3,RTCA,S1PR1,SLC30A7,VAV3,VCAM1"
TCGA.AG.3891.01A	1	100696252	108786158	209	-0.2825	NEUTRAL	NA	23	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,EXTL2,GPR88,LOC101928436,NBPF4,NTNG1,OLFM3,PRMT6,RNPC3,RTCA,S1PR1,SLC25A24,SLC30A7,VAV3,VCAM1"
TCGA.AG.4009.01A	1	100700948	109177665	216	-0.1009	NEUTRAL	NA	25	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,EXTL2,FAM102B,GPR88,LOC101928436,NBPF4,NBPF6,NTNG1,OLFM3,PRMT6,RNPC3,RTCA,S1PR1,SLC25A24,SLC30A7,VAV3,VCAM1"
TCGA.AG.A00C.01A	1	100706279	108507251	191	-0.2679	NEUTRAL	NA	21	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,EXTL2,GPR88,LOC101928436,NTNG1,OLFM3,PRMT6,RNPC3,RTCA,S1PR1,SLC30A7,VAV3,VCAM1"
TCGA.5M.AAT4	1	100795883	121291079	6197	-0.4771	NEUTRAL	NA	153	Too-Many
TCGA.AA.A010.01A	1	100843042	100964453	13	-0.0803	NEUTRAL	NA	1	CDC14A
TCGA.AG.3909.01A	1	100843042	101343064	28	0.0856	NEUTRAL	NA	4	"CDC14A,EXTL2,GPR88,VCAM1"
TCGA.CK.5914.01A	1	100843042	109172143	208	0.2302	NEUTRAL	NA	23	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DPH5,EXTL2,FAM102B,GPR88,LOC101928436,NBPF4,NBPF6,NTNG1,OLFM3,PRMT6,RNPC3,S1PR1,SLC25A24,SLC30A7,VAV3,VCAM1"
TCGA.AA.3844	1	100943099	101663436	208	-0.3993	NEUTRAL	NA	6	"CDC14A,DPH5,EXTL2,GPR88,SLC30A7,VCAM1"
TCGA.AA.A010.01A	1	101185348	102462252	41	0.1912	NEUTRAL	NA	6	"DPH5,EXTL2,OLFM3,S1PR1,SLC30A7,VCAM1"
TCGA.AG.A01W.01A	1	101199916	103919557	89	0.0211	NEUTRAL	NA	7	"COL11A1,DPH5,EXTL2,OLFM3,S1PR1,SLC30A7,VCAM1"
TCGA.AG.3906.01A	1	101354210	104293063	109	-0.2802	NEUTRAL	NA	13	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,DPH5,EXTL2,LOC101928436,OLFM3,RNPC3,S1PR1,SLC30A7"
TCGA.AG.3909.01A	1	101379172	104297370	101	-0.0397	NEUTRAL	NA	12	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,DPH5,LOC101928436,OLFM3,RNPC3,S1PR1,SLC30A7"
TCGA.AG.3584	1	101386178	102513144	422	0.028	NEUTRAL	NA	4	"DPH5,OLFM3,S1PR1,SLC30A7"
TCGA.AA.3967.01A	1	101490858	104160536	83	-0.3183	NEUTRAL	NA	8	"AMY2A,AMY2B,COL11A1,DPH5,LOC101928436,OLFM3,RNPC3,S1PR1"
TCGA.AA.3844	1	101669839	101924325	112	-0.0695	NEUTRAL	NA	1	S1PR1
TCGA.AG.3881	1	101802188	105700934	967	-0.2918	NEUTRAL	NA	9	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,OLFM3,RNPC3"
TCGA.DM.A1HB	1	101843148	106880171	1228	-0.0869	NEUTRAL	NA	9	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,OLFM3,RNPC3"
TCGA.AA.3864	1	102016711	188557022	18963	0.0196	NEUTRAL	NA	696	Too-Many
TCGA.AA.3667	1	102053552	102085807	13	-0.514	NEUTRAL	NA	0	None
TCGA.AA.3667	1	102088316	144876744	5765	-0.026	NEUTRAL	NA	155	Too-Many
TCGA.DY.A1DC	1	102285042	112286947	2925	0.0179	NEUTRAL	NA	78	"ADORA3,AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,ATP5F1,ATXN7L2,C1orf162,C1orf194,CD53,CELSR2,CEPT1,CHI3L2,CHIA,CLCC1,COL11A1,CSF1,CYB561D1,DENND2D,DRAM2,EPS8L3,FAM102B,FAM212B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,KCNA10,KCNA2,KCNA3,KCNC4,KIAA1324,LAMTOR5,LOC101928436,LRIF1,MYBPHL,NBPF4,NBPF6,NTNG1,OLFM3,OVGP1,PIFO,PRMT6,PROK1,PRPF38B,PSMA5,PSRC1,RAP1A,RBM15,RNPC3,SARS,SLC16A4,SLC25A24,SLC6A17,SORT1,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,TMIGD3,UBL4B,VAV3,WDR47,WDR77"
TCGA.EI.6883	1	103012720	110056125	1790	-0.0064	NEUTRAL	NA	37	"AKNAD1,AMIGO1,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,ATXN7L2,C1orf194,CELSR2,CLCC1,COL11A1,CYB561D1,FAM102B,FNDC7,GPSM2,HENMT1,KIAA1324,LOC101928436,MYBPHL,NBPF4,NBPF6,NTNG1,PRMT6,PRPF38B,PSMA5,PSRC1,RNPC3,SARS,SLC25A24,SORT1,STXBP3,SYPL2,TAF13,TMEM167B,VAV3,WDR47"
TCGA.AM.5821	1	103286647	116998457	4233	-0.2854	NEUTRAL	NA	117	Too-Many
TCGA.CM.4750.01A	1	103345249	103496608	56	-0.4398	NEUTRAL	NA	1	COL11A1
TCGA.AA.3815.01A	1	103354961	104297370	76	-0.5044	NEUTRAL	NA	8	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,RNPC3"
TCGA.AA.A010.01A	1	103377654	103444190	20	0.2034	NEUTRAL	NA	1	COL11A1
TCGA.AA.A02K.01A	1	103379124	109565930	243	-0.179	NEUTRAL	NA	23	"AKNAD1,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CLCC1,COL11A1,FAM102B,FNDC7,GPSM2,HENMT1,LOC101928436,NBPF4,NBPF6,NTNG1,PRMT6,PRPF38B,RNPC3,SLC25A24,STXBP3,VAV3,WDR47"
TCGA.AA.3862.01A	1	103487198	117948133	1083	-0.0233	NEUTRAL	NA	127	Too-Many
TCGA.CM.4750.01A	1	103540122	249213943	9819	-0.112	NEUTRAL	NA	1094	Too-Many
TCGA.AG.A01W.01A	1	103921589	109581830	217	-0.3519	NEUTRAL	NA	22	"AKNAD1,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CLCC1,FAM102B,FNDC7,GPSM2,HENMT1,LOC101928436,NBPF4,NBPF6,NTNG1,PRMT6,PRPF38B,RNPC3,SLC25A24,STXBP3,VAV3,WDR47"
TCGA.D5.5539	1	104030620	144549928	5236	-0.0226	NEUTRAL	NA	150	Too-Many
TCGA.AA.3930.01A	1	104070255	108735086	62	-0.4889	NEUTRAL	NA	10	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,NTNG1,PRMT6,RNPC3,SLC25A24,VAV3"
TCGA.AA.A010.01A	1	104114174	104166441	15	-0.1321	NEUTRAL	NA	2	"AMY2A,AMY2B"
TCGA.AG.A014.01A	1	104160065	152185515	2013	-0.0663	NEUTRAL	NA	265	Too-Many
TCGA.AA.3967.01A	1	104161532	113140552	593	0.1642	NEUTRAL	NA	79	"ADORA3,AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,AMY1A,AMY1B,AMY1C,AMY2A,ATP5F1,ATXN7L2,C1orf162,C1orf194,CD53,CELSR2,CEPT1,CHI3L2,CHIA,CLCC1,CSF1,CTTNBP2NL,CYB561D1,DDX20,DENND2D,DRAM2,EPS8L3,FAM102B,FAM212B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,KIAA1324,LAMTOR5,LOC643355,LRIF1,MYBPHL,NBPF4,NBPF6,NTNG1,OVGP1,PIFO,PRMT6,PROK1,PRPF38B,PSMA5,PSRC1,RAP1A,RBM15,SARS,SLC16A4,SLC25A24,SLC6A17,SORT1,ST7L,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,TMIGD3,UBL4B,VAV3,WDR47,WDR77,WNT2B"
TCGA.AA.3861.01A	1	104163121	108766251	55	-0.2927	NEUTRAL	NA	9	"AMY1A,AMY1B,AMY1C,AMY2A,NBPF4,NTNG1,PRMT6,SLC25A24,VAV3"
TCGA.AG.3906.01A	1	104297069	109715054	167	0.0322	NEUTRAL	NA	22	"AKNAD1,AMY1A,AMY1B,AMY1C,C1orf194,CLCC1,FAM102B,FNDC7,GPSM2,HENMT1,KIAA1324,NBPF4,NBPF6,NTNG1,PRMT6,PRPF38B,SLC25A24,STXBP3,TAF13,TMEM167B,VAV3,WDR47"
TCGA.AA.3851	1	104308373	249198691	39385	0.3252	NEUTRAL	NA	1085	Too-Many
TCGA.DM.A1DB	1	104939450	111326617	1930	0.0158	NEUTRAL	NA	53	"AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,ATXN7L2,C1orf194,CELSR2,CLCC1,CSF1,CYB561D1,EPS8L3,FAM102B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,KCNA10,KCNA2,KCNA3,KCNC4,KIAA1324,LAMTOR5,MYBPHL,NBPF4,NBPF6,NTNG1,PRMT6,PROK1,PRPF38B,PSMA5,PSRC1,RBM15,SARS,SLC16A4,SLC25A24,SLC6A17,SORT1,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,UBL4B,VAV3,WDR47"
TCGA.AA.3519	1	105093795	242285703	37161	-0.3222	NEUTRAL	NA	1014	Too-Many
TCGA.5M.AAT5	1	105193346	110922311	1676	0.0594	NEUTRAL	NA	48	"AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,ATXN7L2,C1orf194,CELSR2,CLCC1,CSF1,CYB561D1,EPS8L3,FAM102B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,KCNC4,KIAA1324,MYBPHL,NBPF4,NBPF6,NTNG1,PRMT6,PRPF38B,PSMA5,PSRC1,RBM15,SARS,SLC16A4,SLC25A24,SLC6A17,SORT1,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,UBL4B,VAV3,WDR47"
TCGA.BM.6198	1	105658505	144865626	4933	-0.44715	NEUTRAL	NA	146	Too-Many
TCGA.AA.3955	1	106578085	189147179	18052	0.0253	NEUTRAL	NA	687	Too-Many
TCGA.DM.A1HB	1	106908538	114619821	2502	0.0146	NEUTRAL	NA	91	"ADORA3,AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,AP4B1,ATP5F1,ATXN7L2,BCL2L15,C1orf162,C1orf194,CAPZA1,CD53,CELSR2,CEPT1,CHI3L2,CHIA,CLCC1,CSF1,CTTNBP2NL,CYB561D1,DCLRE1B,DDX20,DENND2D,DRAM2,EPS8L3,FAM102B,FAM19A3,FAM212B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,HIPK1,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,KIAA1324,LAMTOR5,LOC643355,LRIF1,LRIG2,MAGI3,MOV10,MYBPHL,NBPF4,NBPF6,NTNG1,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PRMT6,PROK1,PRPF38B,PSMA5,PSRC1,PTPN22,RAP1A,RBM15,RHOC,RSBN1,SARS,SLC16A1,SLC16A4,SLC25A24,SLC6A17,SORT1,ST7L,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,TMIGD3,UBL4B,VAV3,WDR47,WDR77,WNT2B"
TCGA.CK.4952.01A	1	107492697	115124215	870	-0.08	NEUTRAL	NA	94	"ADORA3,AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,AP4B1,ATP5F1,ATXN7L2,BCAS2,BCL2L15,C1orf162,C1orf194,CAPZA1,CD53,CELSR2,CEPT1,CHI3L2,CHIA,CLCC1,CSF1,CTTNBP2NL,CYB561D1,DCLRE1B,DDX20,DENND2D,DRAM2,EPS8L3,FAM102B,FAM19A3,FAM212B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,HIPK1,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,KIAA1324,LAMTOR5,LOC643355,LRIF1,LRIG2,MAGI3,MOV10,MYBPHL,NBPF4,NBPF6,NTNG1,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PRMT6,PROK1,PRPF38B,PSMA5,PSRC1,PTPN22,RAP1A,RBM15,RHOC,RSBN1,SARS,SLC16A1,SLC16A4,SLC25A24,SLC6A17,SORT1,ST7L,STRIP1,STXBP3,SYPL2,SYT6,TAF13,TMEM167B,TMIGD3,TRIM33,UBL4B,VAV3,WDR47,WDR77,WNT2B"
TCGA.DM.A28M.01A	1	107599317	111506180	468	0.2071	NEUTRAL	NA	55	"AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,ATXN7L2,C1orf194,CD53,CELSR2,CLCC1,CSF1,CYB561D1,EPS8L3,FAM102B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,KCNA10,KCNA2,KCNA3,KCNC4,KIAA1324,LAMTOR5,LRIF1,MYBPHL,NBPF4,NBPF6,NTNG1,PRMT6,PROK1,PRPF38B,PSMA5,PSRC1,RBM15,SARS,SLC16A4,SLC25A24,SLC6A17,SORT1,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,UBL4B,VAV3,WDR47"
TCGA.AA.3815.01A	1	107599317	198608339	6028	0.0202	NEUTRAL	NA	715	Too-Many
TCGA.AG.3909.01A	1	107866853	107979249	7	0.2295	NEUTRAL	NA	1	NTNG1
TCGA.G4.6314	1	107874775	249198691	38477	-0.0021	NEUTRAL	NA	1084	Too-Many
TCGA.AA.A010.01A	1	107961137	108742527	44	0.1137	NEUTRAL	NA	3	"NTNG1,SLC25A24,VAV3"
TCGA.AG.3909.01A	1	108023184	108152469	7	-0.2837	NEUTRAL	NA	2	"NTNG1,VAV3"
TCGA.AG.3909.01A	1	108160124	108507251	22	0.1658	NEUTRAL	NA	1	VAV3
TCGA.CM.5862	1	108191512	249198691	38238	0.3159	NEUTRAL	NA	1083	Too-Many
TCGA.AZ.4615	1	108239923	109143456	247	-0.003	NEUTRAL	NA	5	"FAM102B,NBPF4,NBPF6,SLC25A24,VAV3"
TCGA.AA.3850	1	108239923	118042756	3297	0.13975	NEUTRAL	NA	117	Too-Many
TCGA.AA.3941	1	108281719	118017633	3269	0.2262	NEUTRAL	NA	117	Too-Many
TCGA.AA.3982	1	108281719	118408274	3415	0.0793	NEUTRAL	NA	119	Too-Many
TCGA.AA.3844	1	108281719	153316099	5411	-0.056	NEUTRAL	NA	300	Too-Many
TCGA.AA.3811	1	108286190	144920926	4085	-0.1209	NEUTRAL	NA	144	Too-Many
TCGA.AZ.4684.01A	1	108293684	108786158	29	-0.2428	NEUTRAL	NA	3	"NBPF4,SLC25A24,VAV3"
TCGA.AA.A00D.01A	1	108321989	114499698	680	-0.4014	NEUTRAL	NA	88	"ADORA3,AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,AP4B1,ATP5F1,ATXN7L2,BCL2L15,C1orf162,C1orf194,CAPZA1,CD53,CELSR2,CEPT1,CHI3L2,CHIA,CLCC1,CSF1,CTTNBP2NL,CYB561D1,DCLRE1B,DDX20,DENND2D,DRAM2,EPS8L3,FAM102B,FAM19A3,FAM212B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,HIPK1,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,KIAA1324,LAMTOR5,LOC643355,LRIF1,LRIG2,MAGI3,MOV10,MYBPHL,NBPF4,NBPF6,OVGP1,PHTF1,PIFO,PPM1J,PROK1,PRPF38B,PSMA5,PSRC1,PTPN22,RAP1A,RBM15,RHOC,RSBN1,SARS,SLC16A1,SLC16A4,SLC25A24,SLC6A17,SORT1,ST7L,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,TMIGD3,UBL4B,VAV3,WDR47,WDR77,WNT2B"
TCGA.AG.3898	1	108385120	229984702	30742	0.0911	NEUTRAL	NA	952	Too-Many
TCGA.AG.A00C.01A	1	108679224	109302556	47	0.3312	NEUTRAL	NA	8	"FAM102B,FNDC7,HENMT1,NBPF4,NBPF6,PRPF38B,SLC25A24,STXBP3"
TCGA.AA.A01K.01A	1	108697568	116193984	797	-0.445	NEUTRAL	NA	101	Too-Many
TCGA.AA.A02H.01A	1	108697568	117635301	914	-0.4169	NEUTRAL	NA	113	Too-Many
TCGA.A6.3808.01A	1	108700042	117638749	995	-0.0745	NEUTRAL	NA	113	Too-Many
TCGA.AG.A00Y.01A	1	108703766	117560786	913	-0.3768	NEUTRAL	NA	112	Too-Many
TCGA.AY.A54L.01A	1	108703766	249213943	9729	-0.1087	NEUTRAL	NA	1083	Too-Many
TCGA.AA.3930.01A	1	108742527	108769270	3	0.2221	NEUTRAL	NA	2	"NBPF4,SLC25A24"
TCGA.AG.3909.01A	1	108742527	109172143	13	0.2163	NEUTRAL	NA	4	"FAM102B,NBPF4,NBPF6,SLC25A24"
TCGA.AZ.4684.01A	1	109010021	109289287	38	-0.4607	NEUTRAL	NA	6	"FAM102B,FNDC7,HENMT1,NBPF6,PRPF38B,STXBP3"
TCGA.AA.3930.01A	1	109010021	109302556	43	-0.2266	NEUTRAL	NA	6	"FAM102B,FNDC7,HENMT1,NBPF6,PRPF38B,STXBP3"
TCGA.AA.A00N.01A	1	109013203	109170760	8	-0.4771	NEUTRAL	NA	2	"FAM102B,NBPF6"
TCGA.AA.3861.01A	1	109013203	110162819	255	0.0524	NEUTRAL	NA	28	"AKNAD1,AMIGO1,AMPD2,ATXN7L2,C1orf194,CELSR2,CLCC1,CYB561D1,FAM102B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,HENMT1,KIAA1324,MYBPHL,NBPF6,PRPF38B,PSMA5,PSRC1,SARS,SORT1,STXBP3,SYPL2,TAF13,TMEM167B,WDR47"
TCGA.AG.3891.01A	1	109013203	116269565	836	0.0644	NEUTRAL	NA	100	"ADORA3,AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD1,AMPD2,AP4B1,ATP5F1,ATXN7L2,BCAS2,BCL2L15,C1orf162,C1orf194,CAPZA1,CASQ2,CD53,CELSR2,CEPT1,CHI3L2,CHIA,CLCC1,CSDE1,CSF1,CTTNBP2NL,CYB561D1,DCLRE1B,DDX20,DENND2C,DENND2D,DRAM2,EPS8L3,FAM102B,FAM19A3,FAM212B,FNDC7,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,HENMT1,HIPK1,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,KIAA1324,LAMTOR5,LOC643355,LRIF1,LRIG2,MAGI3,MOV10,MYBPHL,NBPF6,NGF,NRAS,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PROK1,PRPF38B,PSMA5,PSRC1,PTPN22,RAP1A,RBM15,RHOC,RSBN1,SARS,SIKE1,SLC16A1,SLC16A4,SLC6A17,SORT1,ST7L,STRIP1,STXBP3,SYCP1,SYPL2,SYT6,TAF13,TMEM167B,TMIGD3,TRIM33,TSHB,TSPAN2,UBL4B,VANGL1,WDR47,WDR77,WNT2B"
TCGA.AG.4015	1	109084127	109527107	114	0.0829	NEUTRAL	NA	9	"AKNAD1,CLCC1,FAM102B,FNDC7,GPSM2,HENMT1,PRPF38B,STXBP3,WDR47"
TCGA.AG.4009.01A	1	109191187	109241775	12	-0.4073	NEUTRAL	NA	2	"HENMT1,PRPF38B"
TCGA.AA.A010.01A	1	109202409	109241775	7	-0.3758	NEUTRAL	NA	2	"HENMT1,PRPF38B"
TCGA.AA.A00N.01A	1	109255501	109273258	9	-0.1672	NEUTRAL	NA	1	FNDC7
TCGA.AG.4009.01A	1	109264906	109636981	81	0.0165	NEUTRAL	NA	8	"AKNAD1,CLCC1,FNDC7,GPSM2,STXBP3,TAF13,TMEM167B,WDR47"
TCGA.CK.5914.01A	1	109289287	109369780	23	-0.0548	NEUTRAL	NA	2	"AKNAD1,STXBP3"
TCGA.AA.3509.01A	1	109294847	109321857	7	0.3713	NEUTRAL	NA	1	STXBP3
TCGA.AA.A010.01A	1	109294847	109351356	17	-0.1714	NEUTRAL	NA	1	STXBP3
TCGA.AG.A00C.01A	1	109315240	109385736	22	-0.1877	NEUTRAL	NA	2	"AKNAD1,STXBP3"
TCGA.AG.3909.01A	1	109315240	109394347	25	0.0865	NEUTRAL	NA	2	"AKNAD1,STXBP3"
TCGA.AA.A00N.01A	1	109315240	109565940	63	0.1143	NEUTRAL	NA	5	"AKNAD1,CLCC1,GPSM2,STXBP3,WDR47"
TCGA.AZ.4684.01A	1	109325025	111506180	368	-0.5102	NEUTRAL	NA	45	"AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,ATXN7L2,C1orf194,CD53,CELSR2,CLCC1,CSF1,CYB561D1,EPS8L3,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,KIAA1324,LAMTOR5,LRIF1,MYBPHL,PROK1,PSMA5,PSRC1,RBM15,SARS,SLC16A4,SLC6A17,SORT1,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,UBL4B,WDR47"
TCGA.AA.3930.01A	1	109358764	109428111	14	0.0096	NEUTRAL	NA	2	"AKNAD1,GPSM2"
TCGA.F5.6863	1	109373600	145009381	3803	-0.0444	NEUTRAL	NA	135	Too-Many
TCGA.CK.5914.01A	1	109380125	109565940	43	-0.2214	NEUTRAL	NA	4	"AKNAD1,CLCC1,GPSM2,WDR47"
TCGA.AG.A00C.01A	1	109391339	109825099	113	0.2383	NEUTRAL	NA	11	"AKNAD1,C1orf194,CELSR2,CLCC1,GPSM2,KIAA1324,PSRC1,SARS,TAF13,TMEM167B,WDR47"
TCGA.AA.3930.01A	1	109439459	109514013	24	-0.4879	NEUTRAL	NA	3	"CLCC1,GPSM2,WDR47"
TCGA.AG.3909.01A	1	109444395	109565940	32	-0.1233	NEUTRAL	NA	3	"CLCC1,GPSM2,WDR47"
TCGA.AA.3930.01A	1	109517106	109779819	58	-0.0689	NEUTRAL	NA	6	"C1orf194,KIAA1324,SARS,TAF13,TMEM167B,WDR47"
TCGA.AG.4015	1	109527612	109900484	80	-0.288	NEUTRAL	NA	10	"C1orf194,CELSR2,KIAA1324,MYBPHL,PSRC1,SARS,SORT1,TAF13,TMEM167B,WDR47"
TCGA.AA.A010.01A	1	109556395	109656181	16	-0.3567	NEUTRAL	NA	4	"C1orf194,TAF13,TMEM167B,WDR47"
TCGA.AG.A01W.01A	1	109594184	109618080	24	0.1236	NEUTRAL	NA	1	TAF13
TCGA.AA.A02K.01A	1	109607125	109656789	13	0.3253	NEUTRAL	NA	4	"C1orf194,KIAA1324,TAF13,TMEM167B"
TCGA.AG.A01W.01A	1	109624196	109964321	76	-0.4314	NEUTRAL	NA	9	"C1orf194,CELSR2,KIAA1324,MYBPHL,PSMA5,PSRC1,SARS,SORT1,TMEM167B"
TCGA.AG.4009.01A	1	109648594	109732181	15	-0.4137	NEUTRAL	NA	2	"C1orf194,KIAA1324"
TCGA.AG.3909.01A	1	109656779	109707094	3	0.2433	NEUTRAL	NA	1	KIAA1324
TCGA.CK.5914.01A	1	109656779	109707094	3	0.355	NEUTRAL	NA	1	KIAA1324
TCGA.AG.A02X.01A	1	109656779	109730757	8	0.1779	NEUTRAL	NA	1	KIAA1324
TCGA.AA.A010.01A	1	109656779	109756568	22	0.271	NEUTRAL	NA	2	"KIAA1324,SARS"
TCGA.AA.A02K.01A	1	109704486	111742948	315	-0.1946	NEUTRAL	NA	40	"AHCYL1,ALX3,AMIGO1,AMPD2,ATXN7L2,CD53,CELSR2,CEPT1,CSF1,CYB561D1,DENND2D,DRAM2,EPS8L3,GNAI3,GNAT2,GPR61,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,KIAA1324,LAMTOR5,LRIF1,MYBPHL,PROK1,PSMA5,PSRC1,RBM15,SARS,SLC16A4,SLC6A17,SORT1,STRIP1,SYPL2,UBL4B"
TCGA.AG.3909.01A	1	109714451	109822978	58	-0.4947	NEUTRAL	NA	4	"CELSR2,KIAA1324,PSRC1,SARS"
TCGA.CK.5914.01A	1	109730181	109766534	16	-0.2351	NEUTRAL	NA	2	"KIAA1324,SARS"
TCGA.AG.A023.01A	1	109732181	167889739	3828	-0.0978	NEUTRAL	NA	548	Too-Many
TCGA.AG.4009.01A	1	109733936	109792670	23	-0.095	NEUTRAL	NA	3	"CELSR2,KIAA1324,SARS"
TCGA.AG.A02X.01A	1	109733936	145290359	1118	0.1579	NEUTRAL	NA	130	Too-Many
TCGA.AG.3881	1	109737801	111781130	713	-0.2792	NEUTRAL	NA	41	"AHCYL1,ALX3,AMIGO1,AMPD2,ATXN7L2,CD53,CELSR2,CEPT1,CHI3L2,CSF1,CYB561D1,DENND2D,DRAM2,EPS8L3,GNAI3,GNAT2,GPR61,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,KIAA1324,LAMTOR5,LRIF1,MYBPHL,PROK1,PSMA5,PSRC1,RBM15,SARS,SLC16A4,SLC6A17,SORT1,STRIP1,SYPL2,UBL4B"
TCGA.CK.5914.01A	1	109770933	109777794	5	0.3514	NEUTRAL	NA	1	SARS
TCGA.CK.5914.01A	1	109778547	109780372	5	-0.3001	NEUTRAL	NA	1	SARS
TCGA.AG.4009.01A	1	109801003	109813809	19	-0.2638	NEUTRAL	NA	1	CELSR2
TCGA.AA.A004.01A	1	109810126	109896969	36	0.146	NEUTRAL	NA	4	"CELSR2,MYBPHL,PSRC1,SORT1"
TCGA.AG.3906.01A	1	109813539	109912093	36	0.1899	NEUTRAL	NA	4	"CELSR2,MYBPHL,PSRC1,SORT1"
TCGA.AA.A010.01A	1	109814853	109837701	11	-0.5038	NEUTRAL	NA	3	"CELSR2,MYBPHL,PSRC1"
TCGA.AG.4009.01A	1	109814853	109909968	32	0.1814	NEUTRAL	NA	4	"CELSR2,MYBPHL,PSRC1,SORT1"
TCGA.AG.A015.01A	1	109815209	144619985	1006	-0.1619	NEUTRAL	NA	125	Too-Many
TCGA.AA.3930.01A	1	109816081	110163587	81	-0.1481	NEUTRAL	NA	13	"AMIGO1,AMPD2,ATXN7L2,CELSR2,CYB561D1,GNAI3,GNAT2,GPR61,MYBPHL,PSMA5,PSRC1,SORT1,SYPL2"
TCGA.AA.3939.01A	1	109822680	110169760	84	-0.0858	NEUTRAL	NA	12	"AMIGO1,AMPD2,ATXN7L2,CYB561D1,GNAI3,GNAT2,GPR61,MYBPHL,PSMA5,PSRC1,SORT1,SYPL2"
TCGA.AG.3909.01A	1	109823418	109836769	4	0.0751	NEUTRAL	NA	2	"MYBPHL,PSRC1"
TCGA.AG.A00C.01A	1	109836769	109968847	33	-0.0804	NEUTRAL	NA	3	"MYBPHL,PSMA5,SORT1"
TCGA.AA.A01Q.01A	1	109838807	109849427	5	-0.3559	NEUTRAL	NA	1	MYBPHL
TCGA.AA.A01I.01A	1	109838807	145290359	1051	-0.0688	NEUTRAL	NA	126	Too-Many
TCGA.AA.A01Q.01A	1	109856584	110026529	29	0.118	NEUTRAL	NA	3	"PSMA5,SORT1,SYPL2"
TCGA.AG.3909.01A	1	109870070	109912093	11	-0.0341	NEUTRAL	NA	1	SORT1
TCGA.AA.A004.01A	1	109897941	110038269	27	-0.3411	NEUTRAL	NA	5	"ATXN7L2,CYB561D1,PSMA5,SORT1,SYPL2"
TCGA.AG.4015	1	109912050	110536202	168	0.0434	NEUTRAL	NA	18	"AHCYL1,AMIGO1,AMPD2,ATXN7L2,CSF1,CYB561D1,EPS8L3,GNAI3,GNAT2,GPR61,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,PSMA5,SORT1,SYPL2"
TCGA.AG.4009.01A	1	109912093	109968847	9	-0.2792	NEUTRAL	NA	2	"PSMA5,SORT1"
TCGA.AG.A01W.01A	1	109965173	109974782	13	0.3569	NEUTRAL	NA	1	PSMA5
TCGA.AG.A01W.01A	1	110000457	110037319	20	-0.461	NEUTRAL	NA	3	"ATXN7L2,CYB561D1,SYPL2"
TCGA.AA.A00Q.01A	1	110019411	110028625	4	0.2357	NEUTRAL	NA	2	"ATXN7L2,SYPL2"
TCGA.AA.A004.01A	1	110050026	110162819	19	0.1969	NEUTRAL	NA	5	"AMIGO1,AMPD2,GNAI3,GNAT2,GPR61"
TCGA.AG.A01W.01A	1	110081166	110084309	6	-0.017	NEUTRAL	NA	1	GPR61
TCGA.AA.A010.01A	1	110085615	110134613	8	0.3764	NEUTRAL	NA	2	"GNAI3,GPR61"
TCGA.AA.A01Q.01A	1	110085615	110167888	20	0.3652	NEUTRAL	NA	4	"AMPD2,GNAI3,GNAT2,GPR61"
TCGA.AG.3906.01A	1	110085615	110168278	20	-0.0137	NEUTRAL	NA	4	"AMPD2,GNAI3,GNAT2,GPR61"
TCGA.AG.4009.01A	1	110085615	110304078	76	0.2153	NEUTRAL	NA	10	"AMPD2,EPS8L3,GNAI3,GNAT2,GPR61,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5"
TCGA.AG.A00C.01A	1	110085615	111853006	210	0.0783	NEUTRAL	NA	31	"AHCYL1,ALX3,AMPD2,CD53,CEPT1,CHI3L2,CHIA,CSF1,DENND2D,DRAM2,EPS8L3,GNAI3,GNAT2,GPR61,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,LAMTOR5,LRIF1,PROK1,RBM15,SLC16A4,SLC6A17,STRIP1,UBL4B"
TCGA.CK.5914.01A	1	110085615	112308342	283	-0.0915	NEUTRAL	NA	41	"ADORA3,AHCYL1,ALX3,AMPD2,ATP5F1,C1orf162,CD53,CEPT1,CHI3L2,CHIA,CSF1,DDX20,DENND2D,DRAM2,EPS8L3,FAM212B,GNAI3,GNAT2,GPR61,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,LAMTOR5,LRIF1,OVGP1,PIFO,PROK1,RAP1A,RBM15,SLC16A4,SLC6A17,STRIP1,TMIGD3,UBL4B,WDR77"
TCGA.AG.3909.01A	1	110091296	110163587	18	-0.0731	NEUTRAL	NA	3	"AMPD2,GNAI3,GNAT2"
TCGA.AG.A01W.01A	1	110094446	110103787	13	-0.3282	NEUTRAL	NA	1	GNAI3
TCGA.AA.A010.01A	1	110141462	110155347	9	-0.2043	NEUTRAL	NA	1	GNAT2
TCGA.AA.A00N.01A	1	110162819	110259902	42	-0.0845	NEUTRAL	NA	5	"AMPD2,GSTM1,GSTM2,GSTM4,GSTM5"
TCGA.AA.A01Q.01A	1	110168278	111060627	129	-0.2023	NEUTRAL	NA	19	"AHCYL1,ALX3,AMPD2,CSF1,EPS8L3,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,KCNA10,KCNC4,LAMTOR5,PROK1,RBM15,SLC16A4,SLC6A17,STRIP1,UBL4B"
TCGA.AG.3906.01A	1	110168759	110173258	10	-0.4176	NEUTRAL	NA	1	AMPD2
TCGA.AA.3930.01A	1	110172387	110210984	12	-0.3839	NEUTRAL	NA	3	"AMPD2,GSTM2,GSTM4"
TCGA.AA.A004.01A	1	110172838	110207545	9	0.264	NEUTRAL	NA	2	"AMPD2,GSTM4"
TCGA.AA.3939.01A	1	110198933	110213870	12	-0.0754	NEUTRAL	NA	2	"GSTM2,GSTM4"
TCGA.AG.3906.01A	1	110198933	110213870	12	-0.0117	NEUTRAL	NA	2	"GSTM2,GSTM4"
TCGA.AA.A004.01A	1	110210984	117618791	651	-0.116	NEUTRAL	NA	82	"ADORA3,AHCYL1,ALX3,AMPD1,AP4B1,ATP1A1,ATP5F1,BCAS2,BCL2L15,C1orf137,C1orf162,CAPZA1,CASQ2,CD101,CD2,CD53,CD58,CEPT1,CHI3L2,CHIA,CSDE1,CSF1,CTTNBP2NL,DCLRE1B,DDX20,DENND2C,DENND2D,DRAM2,EPS8L3,FAM19A3,FAM212B,GSTM1,GSTM2,GSTM3,GSTM5,HIPK1,IGSF3,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,LAMTOR5,LOC643355,LRIF1,LRIG2,MAB21L3,MAGI3,MOV10,NGF,NHLH2,NRAS,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PROK1,PTGFRN,PTPN22,RAP1A,RBM15,RHOC,RSBN1,SIKE1,SLC16A1,SLC16A4,SLC22A15,SLC6A17,ST7L,STRIP1,SYCP1,SYT6,TMIGD3,TRIM33,TSHB,TSPAN2,TTF2,UBL4B,VANGL1,WDR77,WNT2B"
TCGA.AA.3930.01A	1	110211511	110280666	17	0.0764	NEUTRAL	NA	4	"GSTM1,GSTM2,GSTM3,GSTM5"
TCGA.AG.3906.01A	1	110215781	110259902	9	0.3178	NEUTRAL	NA	3	"GSTM1,GSTM2,GSTM5"
TCGA.AA.A00Q.01A	1	110217315	110255672	9	-0.2411	NEUTRAL	NA	3	"GSTM1,GSTM2,GSTM5"
TCGA.AA.A01C.01A	1	110230415	111742947	152	-0.2646	NEUTRAL	NA	23	"AHCYL1,ALX3,CD53,CEPT1,CSF1,DENND2D,DRAM2,EPS8L3,GSTM1,GSTM3,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,LAMTOR5,LRIF1,PROK1,RBM15,SLC16A4,SLC6A17,STRIP1,UBL4B"
TCGA.AG.3611.01A	1	110254856	111742947	149	-0.0725	NEUTRAL	NA	22	"AHCYL1,ALX3,CD53,CEPT1,CSF1,DENND2D,DRAM2,EPS8L3,GSTM3,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,LAMTOR5,LRIF1,PROK1,RBM15,SLC16A4,SLC6A17,STRIP1,UBL4B"
TCGA.AA.3939.01A	1	110255672	120611883	922	-0.2612	NEUTRAL	NA	99	"ADAM30,ADORA3,AHCYL1,ALX3,AMPD1,AP4B1,ATP1A1,ATP5F1,BCAS2,BCL2L15,C1orf137,C1orf162,CAPZA1,CASQ2,CD101,CD2,CD53,CD58,CEPT1,CHI3L2,CHIA,CSDE1,CSF1,CTTNBP2NL,DCLRE1B,DDX20,DENND2C,DENND2D,DRAM2,EPS8L3,FAM19A3,FAM212B,FAM46C,GDAP2,GSTM3,GSTM5,HAO2,HIPK1,HMGCS2,HSD3B1,HSD3B2,IGSF3,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,LAMTOR5,LOC643355,LRIF1,LRIG2,MAB21L3,MAGI3,MAN1A2,MOV10,NBPF7,NGF,NHLH2,NOTCH2,NRAS,OLFML3,OVGP1,PHGDH,PHTF1,PIFO,PPM1J,PROK1,PTGFRN,PTPN22,RAP1A,RBM15,REG4,RHOC,RSBN1,SIKE1,SLC16A1,SLC16A4,SLC22A15,SLC6A17,SPAG17,ST7L,STRIP1,SYCP1,SYT6,TBX15,TMIGD3,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,UBL4B,VANGL1,VTCN1,WARS2,WDR3,WDR77,WNT2B,ZNF697"
TCGA.AG.3906.01A	1	110279642	110302253	18	-0.3241	NEUTRAL	NA	2	"EPS8L3,GSTM3"
TCGA.AG.A01L.01A	1	110279642	115167760	459	-0.1	NEUTRAL	NA	58	"ADORA3,AHCYL1,ALX3,AP4B1,ATP5F1,BCAS2,BCL2L15,C1orf162,CAPZA1,CD53,CEPT1,CHI3L2,CHIA,CSF1,CTTNBP2NL,DCLRE1B,DDX20,DENND2C,DENND2D,DRAM2,EPS8L3,FAM19A3,FAM212B,GSTM3,HIPK1,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,LAMTOR5,LOC643355,LRIF1,LRIG2,MAGI3,MOV10,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PROK1,PTPN22,RAP1A,RBM15,RHOC,RSBN1,SLC16A1,SLC16A4,SLC6A17,ST7L,STRIP1,SYT6,TMIGD3,TRIM33,UBL4B,WDR77,WNT2B"
TCGA.AA.3930.01A	1	110281986	111861068	164	-0.3555	NEUTRAL	NA	23	"AHCYL1,ALX3,CD53,CEPT1,CHI3L2,CHIA,CSF1,DENND2D,DRAM2,EPS8L3,GSTM3,KCNA10,KCNA2,KCNA3,KCNC4,LAMTOR5,LRIF1,PROK1,RBM15,SLC16A4,SLC6A17,STRIP1,UBL4B"
TCGA.AA.A00N.01A	1	110282406	110304078	16	0.2862	NEUTRAL	NA	2	"EPS8L3,GSTM3"
TCGA.AG.3909.01A	1	110282406	110604005	55	-0.4848	NEUTRAL	NA	6	"AHCYL1,ALX3,CSF1,EPS8L3,GSTM3,STRIP1"
TCGA.AA.3861.01A	1	110282785	120464283	878	0.0749	NEUTRAL	NA	98	"ADAM30,ADORA3,AHCYL1,ALX3,AMPD1,AP4B1,ATP1A1,ATP5F1,BCAS2,BCL2L15,C1orf137,C1orf162,CAPZA1,CASQ2,CD101,CD2,CD53,CD58,CEPT1,CHI3L2,CHIA,CSDE1,CSF1,CTTNBP2NL,DCLRE1B,DDX20,DENND2C,DENND2D,DRAM2,EPS8L3,FAM19A3,FAM212B,FAM46C,GDAP2,GSTM3,HAO2,HIPK1,HMGCS2,HSD3B1,HSD3B2,IGSF3,KCNA10,KCNA2,KCNA3,KCNC4,KCND3,LAMTOR5,LOC643355,LRIF1,LRIG2,MAB21L3,MAGI3,MAN1A2,MOV10,NBPF7,NGF,NHLH2,NOTCH2,NRAS,OLFML3,OVGP1,PHGDH,PHTF1,PIFO,PPM1J,PROK1,PTGFRN,PTPN22,RAP1A,RBM15,REG4,RHOC,RSBN1,SIKE1,SLC16A1,SLC16A4,SLC22A15,SLC6A17,SPAG17,ST7L,STRIP1,SYCP1,SYT6,TBX15,TMIGD3,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,UBL4B,VANGL1,VTCN1,WARS2,WDR3,WDR77,WNT2B,ZNF697"
TCGA.AG.A01W.01A	1	110360478	110947400	67	-0.3699	NEUTRAL	NA	10	"AHCYL1,ALX3,CSF1,KCNC4,LAMTOR5,RBM15,SLC16A4,SLC6A17,STRIP1,UBL4B"
TCGA.AF.3914.01A	1	110456839	110592069	35	-0.4008	NEUTRAL	NA	3	"AHCYL1,CSF1,STRIP1"
TCGA.AG.4015	1	110537863	110712045	55	-0.4206	NEUTRAL	NA	5	"AHCYL1,ALX3,SLC6A17,STRIP1,UBL4B"
TCGA.AG.3906.01A	1	110551609	110585669	21	-0.2289	NEUTRAL	NA	2	"AHCYL1,STRIP1"
TCGA.AF.3914.01A	1	110592912	111970232	124	0.0278	NEUTRAL	NA	21	"ALX3,CD53,CEPT1,CHI3L2,CHIA,DENND2D,DRAM2,KCNA10,KCNA2,KCNA3,KCNC4,LAMTOR5,LRIF1,OVGP1,PIFO,PROK1,RBM15,SLC16A4,SLC6A17,STRIP1,UBL4B"
TCGA.AG.3909.01A	1	110607182	110775467	18	0.369	NEUTRAL	NA	4	"ALX3,KCNC4,SLC6A17,UBL4B"
TCGA.AA.A00N.01A	1	110612910	110881986	20	0.1452	NEUTRAL	NA	5	"ALX3,KCNC4,RBM15,SLC6A17,UBL4B"
TCGA.AG.4009.01A	1	110655105	110948869	31	-0.2199	NEUTRAL	NA	6	"KCNC4,LAMTOR5,RBM15,SLC16A4,SLC6A17,UBL4B"
TCGA.AG.4015	1	110713908	111137810	206	0.0492	NEUTRAL	NA	8	"KCNA10,KCNA2,KCNC4,LAMTOR5,PROK1,RBM15,SLC16A4,SLC6A17"
TCGA.AG.3906.01A	1	110774791	111060627	22	-0.1363	NEUTRAL	NA	6	"KCNA10,KCNC4,LAMTOR5,PROK1,RBM15,SLC16A4"
TCGA.AA.A010.01A	1	110881986	110946504	13	0.0571	NEUTRAL	NA	3	"LAMTOR5,RBM15,SLC16A4"
TCGA.EI.6883	1	110883916	111787871	369	0.0175	NEUTRAL	NA	13	"CD53,CEPT1,CHI3L2,DENND2D,DRAM2,KCNA10,KCNA2,KCNA3,LAMTOR5,LRIF1,PROK1,RBM15,SLC16A4"
TCGA.AG.3909.01A	1	110906341	110925404	7	-0.4163	NEUTRAL	NA	1	SLC16A4
TCGA.AG.4009.01A	1	110950208	111061043	7	0.2725	NEUTRAL	NA	3	"KCNA10,LAMTOR5,PROK1"
TCGA.AG.4015	1	111140584	113284078	945	-0.3887	NEUTRAL	NA	29	"ADORA3,ATP5F1,C1orf162,CAPZA1,CD53,CEPT1,CHI3L2,CHIA,CTTNBP2NL,DDX20,DENND2D,DRAM2,FAM19A3,FAM212B,KCNA2,KCNA3,KCND3,LOC643355,LRIF1,MOV10,OVGP1,PIFO,PPM1J,RAP1A,RHOC,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AG.3906.01A	1	111215697	112322803	124	-0.1502	NEUTRAL	NA	19	"ADORA3,ATP5F1,C1orf162,CD53,CEPT1,CHI3L2,CHIA,DDX20,DENND2D,DRAM2,FAM212B,KCNA3,KCND3,LRIF1,OVGP1,PIFO,RAP1A,TMIGD3,WDR77"
TCGA.A6.2679	1	111226894	145013753	3222	-0.024	NEUTRAL	NA	93	"ADAM30,ADORA3,AMPD1,AP4B1,ATP1A1,ATP5F1,BCAS2,BCL2L15,C1orf137,C1orf162,CAPZA1,CASQ2,CD101,CD2,CD53,CD58,CEPT1,CHI3L2,CHIA,CSDE1,CTTNBP2NL,DCLRE1B,DDX20,DENND2C,DENND2D,DRAM2,FAM19A3,FAM212B,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HIPK1,HMGCS2,HSD3B1,HSD3B2,IGSF3,KCND3,LOC643355,LRIF1,LRIG2,MAB21L3,MAGI3,MAN1A2,MOV10,NBPF20,NBPF7,NBPF8,NBPF9,NGF,NHLH2,NOTCH2,NRAS,OLFML3,OVGP1,PDE4DIP,PHGDH,PHTF1,PIFO,PPIAL4A,PPIAL4C,PPIAL4G,PPM1J,PTGFRN,PTPN22,RAP1A,REG4,RHOC,RSBN1,SIKE1,SLC16A1,SLC22A15,SPAG17,ST7L,SYCP1,SYT6,TBX15,TMIGD3,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WARS2,WDR3,WDR77,WNT2B,ZNF697"
TCGA.AG.A01W.01A	1	111235488	111544471	39	-0.2334	NEUTRAL	NA	2	"CD53,LRIF1"
TCGA.AG.3909.01A	1	111433964	111662444	16	0.0944	NEUTRAL	NA	3	"CD53,DRAM2,LRIF1"
TCGA.AG.4009.01A	1	111433964	111739760	36	-0.0648	NEUTRAL	NA	5	"CD53,CEPT1,DENND2D,DRAM2,LRIF1"
TCGA.D5.6536	1	111492858	114707195	1120	-0.0186	NEUTRAL	NA	38	"ADORA3,AP4B1,ATP5F1,BCL2L15,C1orf162,CAPZA1,CEPT1,CHI3L2,CHIA,CTTNBP2NL,DCLRE1B,DDX20,DENND2D,DRAM2,FAM19A3,FAM212B,HIPK1,KCND3,LOC643355,LRIF1,LRIG2,MAGI3,MOV10,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PTPN22,RAP1A,RHOC,RSBN1,SLC16A1,ST7L,SYT6,TMIGD3,WDR77,WNT2B"
TCGA.AG.A01W.01A	1	111579016	111659374	11	-0.4097	NEUTRAL	NA	0	None
TCGA.AA.3509.01A	1	111660765	111726763	14	0.335	NEUTRAL	NA	2	"CEPT1,DRAM2"
TCGA.AA.A010.01A	1	111660765	111730176	16	-0.2241	NEUTRAL	NA	3	"CEPT1,DENND2D,DRAM2"
TCGA.AG.A01W.01A	1	111661815	111695340	11	0.2118	NEUTRAL	NA	2	"CEPT1,DRAM2"
TCGA.DM.A28M.01A	1	111667323	114092132	204	0.1799	NEUTRAL	NA	28	"ADORA3,ATP5F1,C1orf162,CAPZA1,CEPT1,CHI3L2,CHIA,CTTNBP2NL,DDX20,DENND2D,DRAM2,FAM19A3,FAM212B,KCND3,LOC643355,LRIG2,MAGI3,MOV10,OVGP1,PIFO,PPM1J,RAP1A,RHOC,SLC16A1,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AZ.4684.01A	1	111730176	114092132	193	-0.4321	NEUTRAL	NA	26	"ADORA3,ATP5F1,C1orf162,CAPZA1,CHI3L2,CHIA,CTTNBP2NL,DDX20,DENND2D,FAM19A3,FAM212B,KCND3,LOC643355,LRIG2,MAGI3,MOV10,OVGP1,PIFO,PPM1J,RAP1A,RHOC,SLC16A1,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AA.A010.01A	1	111730716	111781364	19	0.3453	NEUTRAL	NA	2	"CHI3L2,DENND2D"
TCGA.AG.A01W.01A	1	111758588	113438448	151	-0.4563	NEUTRAL	NA	22	"ADORA3,ATP5F1,C1orf162,CAPZA1,CHI3L2,CHIA,CTTNBP2NL,DDX20,FAM19A3,FAM212B,KCND3,LOC643355,MOV10,OVGP1,PIFO,PPM1J,RAP1A,RHOC,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AG.3611.01A	1	111770270	111784820	10	-0.4276	NEUTRAL	NA	1	CHI3L2
TCGA.AA.A02K.01A	1	111770271	111781326	8	0.1719	NEUTRAL	NA	1	CHI3L2
TCGA.AA.A01C.01A	1	111781364	113235361	120	-0.3501	NEUTRAL	NA	19	"ADORA3,ATP5F1,C1orf162,CAPZA1,CHI3L2,CHIA,CTTNBP2NL,DDX20,FAM212B,KCND3,LOC643355,MOV10,OVGP1,PIFO,RAP1A,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AG.4009.01A	1	111783898	111862797	12	-0.1038	NEUTRAL	NA	2	"CHI3L2,CHIA"
TCGA.AA.A010.01A	1	111783898	111970232	29	-0.1312	NEUTRAL	NA	4	"CHI3L2,CHIA,OVGP1,PIFO"
TCGA.AA.A02K.01A	1	111783899	113256073	157	-0.1244	NEUTRAL	NA	21	"ADORA3,ATP5F1,C1orf162,CAPZA1,CHI3L2,CHIA,CTTNBP2NL,DDX20,FAM212B,KCND3,LOC643355,MOV10,OVGP1,PIFO,PPM1J,RAP1A,RHOC,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AG.3909.01A	1	111853006	112281740	61	0.1172	NEUTRAL	NA	10	"ADORA3,ATP5F1,C1orf162,CHIA,FAM212B,OVGP1,PIFO,RAP1A,TMIGD3,WDR77"
TCGA.AG.A00C.01A	1	111854238	112106431	53	-0.2966	NEUTRAL	NA	8	"ADORA3,ATP5F1,C1orf162,CHIA,OVGP1,PIFO,TMIGD3,WDR77"
TCGA.AG.3611.01A	1	111854802	117568183	473	0.0292	NEUTRAL	NA	56	"ADORA3,AMPD1,AP4B1,ATP1A1,ATP5F1,BCAS2,BCL2L15,C1orf137,C1orf162,CAPZA1,CASQ2,CD101,CD2,CD58,CHIA,CSDE1,CTTNBP2NL,DCLRE1B,DDX20,DENND2C,FAM19A3,FAM212B,HIPK1,IGSF3,KCND3,LOC643355,LRIG2,MAB21L3,MAGI3,MOV10,NGF,NHLH2,NRAS,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PTGFRN,PTPN22,RAP1A,RHOC,RSBN1,SIKE1,SLC16A1,SLC22A15,ST7L,SYCP1,SYT6,TMIGD3,TRIM33,TSHB,TSPAN2,VANGL1,WDR77,WNT2B"
TCGA.AG.4009.01A	1	111957084	113162410	87	0.0024	NEUTRAL	NA	15	"ADORA3,ATP5F1,C1orf162,CAPZA1,CTTNBP2NL,DDX20,FAM212B,KCND3,LOC643355,OVGP1,RAP1A,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AA.3930.01A	1	111966118	113232485	100	-0.2994	NEUTRAL	NA	16	"ADORA3,ATP5F1,C1orf162,CAPZA1,CTTNBP2NL,DDX20,FAM212B,KCND3,LOC643355,MOV10,OVGP1,RAP1A,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AG.A00H.01A	1	111985245	249210793	8484	-0.1476	NEUTRAL	NA	1024	Too-Many
TCGA.AF.3914.01A	1	111996786	113161504	68	0.1594	NEUTRAL	NA	12	"ADORA3,ATP5F1,C1orf162,CTTNBP2NL,DDX20,FAM212B,KCND3,LOC643355,RAP1A,ST7L,TMIGD3,WNT2B"
TCGA.EI.6883	1	112033284	113230393	544	-0.0033	NEUTRAL	NA	12	"ADORA3,CAPZA1,CTTNBP2NL,DDX20,FAM212B,KCND3,LOC643355,MOV10,RAP1A,ST7L,TMIGD3,WNT2B"
TCGA.AG.A00C.01A	1	112233940	112308342	15	0.2819	NEUTRAL	NA	3	"DDX20,FAM212B,RAP1A"
TCGA.AA.A00N.01A	1	112237946	112298510	9	-0.3668	NEUTRAL	NA	3	"DDX20,FAM212B,RAP1A"
TCGA.DY.A1DC	1	112314564	112523094	137	-0.0878	NEUTRAL	NA	1	KCND3
TCGA.AG.A00C.01A	1	112318660	113161504	33	-0.023	NEUTRAL	NA	5	"CTTNBP2NL,KCND3,LOC643355,ST7L,WNT2B"
TCGA.AA.A00N.01A	1	112318660	113162410	36	0.1253	NEUTRAL	NA	6	"CAPZA1,CTTNBP2NL,KCND3,LOC643355,ST7L,WNT2B"
TCGA.AG.3909.01A	1	112318660	113162410	35	-0.0678	NEUTRAL	NA	6	"CAPZA1,CTTNBP2NL,KCND3,LOC643355,ST7L,WNT2B"
TCGA.NH.A8F8	1	112392359	249198691	36877	0.0148	NEUTRAL	NA	1015	Too-Many
TCGA.CK.5914.01A	1	112524219	113143342	25	-0.0131	NEUTRAL	NA	5	"CTTNBP2NL,KCND3,LOC643355,ST7L,WNT2B"
TCGA.CM.4747	1	112787395	145532548	2485	-0.005	NEUTRAL	NA	85	"ADAM30,AMPD1,ANKRD34A,AP4B1,ATP1A1,BCAS2,BCL2L15,C1orf137,CAPZA1,CASQ2,CD101,CD2,CD58,CSDE1,CTTNBP2NL,DCLRE1B,DENND2C,FAM19A3,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HFE2,HIPK1,HMGCS2,HSD3B1,HSD3B2,IGSF3,ITGA10,LIX1L,LRIG2,MAB21L3,MAGI3,MAN1A2,MOV10,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NGF,NHLH2,NOTCH2,NOTCH2NL,NRAS,OLFML3,PDE4DIP,PEX11B,PHGDH,PHTF1,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4G,PPM1J,PTGFRN,PTPN22,RBM8A,REG4,RHOC,RSBN1,SEC22B,SIKE1,SLC16A1,SLC22A15,SPAG17,ST7L,SYCP1,SYT6,TBX15,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,TXNIP,VANGL1,VTCN1,WARS2,WDR3,WNT2B,ZNF697"
TCGA.AG.3906.01A	1	112958747	113153426	23	-0.0115	NEUTRAL	NA	3	"CTTNBP2NL,ST7L,WNT2B"
TCGA.AA.A010.01A	1	112958747	113162410	28	0.2283	NEUTRAL	NA	4	"CAPZA1,CTTNBP2NL,ST7L,WNT2B"
TCGA.AA.3967.01A	1	113143342	113459799	46	0.3506	NEUTRAL	NA	7	"CAPZA1,FAM19A3,MOV10,PPM1J,RHOC,SLC16A1,ST7L"
TCGA.CK.5914.01A	1	113153426	113471677	48	-0.5138	NEUTRAL	NA	7	"CAPZA1,FAM19A3,MOV10,PPM1J,RHOC,SLC16A1,ST7L"
TCGA.AG.3906.01A	1	113159390	113235361	17	0.2957	NEUTRAL	NA	3	"CAPZA1,MOV10,ST7L"
TCGA.AF.3914.01A	1	113162410	113231547	12	-0.3944	NEUTRAL	NA	2	"CAPZA1,MOV10"
TCGA.AA.A00F.01A	1	113189792	113456506	40	0.31	NEUTRAL	NA	6	"CAPZA1,FAM19A3,MOV10,PPM1J,RHOC,SLC16A1"
TCGA.AG.A00C.01A	1	113189792	113642782	51	0.3476	NEUTRAL	NA	7	"CAPZA1,FAM19A3,LRIG2,MOV10,PPM1J,RHOC,SLC16A1"
TCGA.AF.3914.01A	1	113232026	113237028	6	0.2557	NEUTRAL	NA	1	MOV10
TCGA.AG.A008.01A	1	113236610	155110414	1943	0.1199	NEUTRAL	NA	285	Too-Many
TCGA.AA.3930.01A	1	113237990	117237331	360	-0.3389	NEUTRAL	NA	36	"AMPD1,AP4B1,ATP1A1,BCAS2,BCL2L15,C1orf137,CASQ2,CD58,CSDE1,DCLRE1B,DENND2C,FAM19A3,HIPK1,IGSF3,LRIG2,MAB21L3,MAGI3,MOV10,NGF,NHLH2,NRAS,OLFML3,PHTF1,PPM1J,PTPN22,RHOC,RSBN1,SIKE1,SLC16A1,SLC22A15,SYCP1,SYT6,TRIM33,TSHB,TSPAN2,VANGL1"
TCGA.AA.A01C.01A	1	113246239	114201650	45	-0.1407	NEUTRAL	NA	6	"FAM19A3,LRIG2,MAGI3,PPM1J,RHOC,SLC16A1"
TCGA.AG.4009.01A	1	113264808	113641266	15	-0.3229	NEUTRAL	NA	3	"FAM19A3,LRIG2,SLC16A1"
TCGA.AA.A02K.01A	1	113264809	113459769	6	0.3443	NEUTRAL	NA	2	"FAM19A3,SLC16A1"
TCGA.AF.3914.01A	1	113265591	145566961	736	0.2209	NEUTRAL	NA	79	"ADAM30,AMPD1,ANKRD34A,ANKRD35,AP4B1,ATP1A1,BCAS2,BCL2L15,C1orf137,CASQ2,CD101,CD2,CD58,CSDE1,DCLRE1B,DENND2C,FAM19A3,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HFE2,HIPK1,HMGCS2,HSD3B1,HSD3B2,IGSF3,ITGA10,LIX1L,LRIG2,MAB21L3,MAGI3,MAN1A2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NGF,NHLH2,NOTCH2,NOTCH2NL,NRAS,OLFML3,PDE4DIP,PEX11B,PHGDH,PHTF1,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4G,PTGFRN,PTPN22,RBM8A,REG4,RSBN1,SEC22B,SIKE1,SLC16A1,SLC22A15,SPAG17,SYCP1,SYT6,TBX15,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,TXNIP,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AG.4015	1	113297707	113541835	39	0.0769	NEUTRAL	NA	1	SLC16A1
TCGA.AG.A01W.01A	1	113439988	114003174	44	-0.0229	NEUTRAL	NA	3	"LRIG2,MAGI3,SLC16A1"
TCGA.AA.A00F.01A	1	113459799	150687046	957	4.00E-04	NEUTRAL	NA	134	Too-Many
TCGA.AA.3967.01A	1	113464565	120437848	543	0.0155	NEUTRAL	NA	54	"ADAM30,AMPD1,AP4B1,ATP1A1,BCAS2,BCL2L15,C1orf137,CASQ2,CD101,CD2,CD58,CSDE1,DCLRE1B,DENND2C,FAM46C,GDAP2,HAO2,HIPK1,HMGCS2,HSD3B1,HSD3B2,IGSF3,LRIG2,MAB21L3,MAGI3,MAN1A2,NBPF7,NGF,NHLH2,NRAS,OLFML3,PHGDH,PHTF1,PTGFRN,PTPN22,REG4,RSBN1,SIKE1,SLC16A1,SLC22A15,SPAG17,SYCP1,SYT6,TBX15,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AA.A02K.01A	1	113464566	115215697	186	-0.079	NEUTRAL	NA	15	"AP4B1,BCAS2,BCL2L15,DCLRE1B,DENND2C,HIPK1,LRIG2,MAGI3,OLFML3,PHTF1,PTPN22,RSBN1,SLC16A1,SYT6,TRIM33"
TCGA.AA.A00N.01A	1	113471677	113642782	10	0.0335	NEUTRAL	NA	2	"LRIG2,SLC16A1"
TCGA.AG.4015	1	113544840	117287517	1197	-0.3669	NEUTRAL	NA	31	"AMPD1,AP4B1,ATP1A1,BCAS2,BCL2L15,C1orf137,CASQ2,CD58,CSDE1,DCLRE1B,DENND2C,HIPK1,IGSF3,LRIG2,MAB21L3,MAGI3,NGF,NHLH2,NRAS,OLFML3,PHTF1,PTPN22,RSBN1,SIKE1,SLC22A15,SYCP1,SYT6,TRIM33,TSHB,TSPAN2,VANGL1"
TCGA.AG.3909.01A	1	113615992	114268993	51	0.0415	NEUTRAL	NA	3	"LRIG2,MAGI3,PHTF1"
TCGA.CK.5914.01A	1	113615992	114281297	54	0.0181	NEUTRAL	NA	3	"LRIG2,MAGI3,PHTF1"
TCGA.AG.3906.01A	1	113633876	114512540	113	-0.0252	NEUTRAL	NA	9	"AP4B1,BCL2L15,DCLRE1B,HIPK1,LRIG2,MAGI3,PHTF1,PTPN22,RSBN1"
TCGA.AG.4009.01A	1	113642782	116675704	273	0.043	NEUTRAL	NA	27	"AMPD1,AP4B1,BCAS2,BCL2L15,CASQ2,CSDE1,DCLRE1B,DENND2C,HIPK1,LRIG2,MAB21L3,MAGI3,NGF,NHLH2,NRAS,OLFML3,PHTF1,PTPN22,RSBN1,SIKE1,SLC22A15,SYCP1,SYT6,TRIM33,TSHB,TSPAN2,VANGL1"
TCGA.AG.A00C.01A	1	113650169	114268993	42	-0.1256	NEUTRAL	NA	3	"LRIG2,MAGI3,PHTF1"
TCGA.F4.6461	1	113663926	240567970	33538	0.0968	NEUTRAL	NA	922	Too-Many
TCGA.AF.6136	1	113773980	116354570	806	0.0516	NEUTRAL	NA	23	"AMPD1,AP4B1,BCAS2,BCL2L15,CASQ2,CSDE1,DCLRE1B,DENND2C,HIPK1,MAGI3,NGF,NRAS,OLFML3,PHTF1,PTPN22,RSBN1,SIKE1,SYCP1,SYT6,TRIM33,TSHB,TSPAN2,VANGL1"
TCGA.DM.A1DB	1	113775760	185902977	14585	0.0274	NEUTRAL	NA	598	Too-Many
TCGA.AG.A01W.01A	1	114041765	114163685	26	-0.222	NEUTRAL	NA	1	MAGI3
TCGA.AZ.4684.01A	1	114165401	115420668	198	-0.4396	NEUTRAL	NA	18	"AMPD1,AP4B1,BCAS2,BCL2L15,CSDE1,DCLRE1B,DENND2C,HIPK1,MAGI3,NRAS,OLFML3,PHTF1,PTPN22,RSBN1,SIKE1,SYCP1,SYT6,TRIM33"
TCGA.DM.A28M.01A	1	114165401	115420668	198	0.19	NEUTRAL	NA	18	"AMPD1,AP4B1,BCAS2,BCL2L15,CSDE1,DCLRE1B,DENND2C,HIPK1,MAGI3,NRAS,OLFML3,PHTF1,PTPN22,RSBN1,SIKE1,SYCP1,SYT6,TRIM33"
TCGA.AG.A01W.01A	1	114192628	115019624	98	-0.4184	NEUTRAL	NA	11	"AP4B1,BCL2L15,DCLRE1B,HIPK1,MAGI3,OLFML3,PHTF1,PTPN22,RSBN1,SYT6,TRIM33"
TCGA.AA.A01C.01A	1	114214305	115417056	183	-0.4295	NEUTRAL	NA	18	"AMPD1,AP4B1,BCAS2,BCL2L15,CSDE1,DCLRE1B,DENND2C,HIPK1,MAGI3,NRAS,OLFML3,PHTF1,PTPN22,RSBN1,SIKE1,SYCP1,SYT6,TRIM33"
TCGA.AA.A00N.01A	1	114267334	114281297	4	-0.1903	NEUTRAL	NA	1	PHTF1
TCGA.AG.A00C.01A	1	114280715	114372535	16	0.2925	NEUTRAL	NA	3	"PHTF1,PTPN22,RSBN1"
TCGA.CK.5914.01A	1	114319795	114354325	4	0.1398	NEUTRAL	NA	1	RSBN1
TCGA.AG.A00C.01A	1	114375648	116675704	215	-0.0871	NEUTRAL	NA	23	"AMPD1,AP4B1,BCAS2,BCL2L15,CASQ2,CSDE1,DCLRE1B,DENND2C,HIPK1,MAB21L3,NGF,NHLH2,NRAS,OLFML3,PTPN22,SIKE1,SLC22A15,SYCP1,SYT6,TRIM33,TSHB,TSPAN2,VANGL1"
TCGA.AG.3909.01A	1	114380165	114429831	17	0.1019	NEUTRAL	NA	2	"BCL2L15,PTPN22"
TCGA.AA.A00N.01A	1	114380761	114429831	16	0.3262	NEUTRAL	NA	2	"BCL2L15,PTPN22"
TCGA.CK.5914.01A	1	114394601	114429831	13	0.1206	NEUTRAL	NA	2	"BCL2L15,PTPN22"
TCGA.AG.3909.01A	1	114437640	114499222	19	-0.5037	NEUTRAL	NA	3	"AP4B1,DCLRE1B,HIPK1"
TCGA.AA.A00N.01A	1	114437640	114504902	22	-0.299	NEUTRAL	NA	3	"AP4B1,DCLRE1B,HIPK1"
TCGA.CK.5914.01A	1	114495405	115167760	69	0.1061	NEUTRAL	NA	6	"BCAS2,DENND2C,HIPK1,OLFML3,SYT6,TRIM33"
TCGA.AG.3909.01A	1	114499698	115167760	61	0.152	NEUTRAL	NA	6	"BCAS2,DENND2C,HIPK1,OLFML3,SYT6,TRIM33"
TCGA.AG.3906.01A	1	114514417	114523559	6	-0.3868	NEUTRAL	NA	2	"HIPK1,OLFML3"
TCGA.CI.6621	1	114577594	116164697	562	0.1339	NEUTRAL	NA	12	"AMPD1,BCAS2,CSDE1,DENND2C,NGF,NRAS,SIKE1,SYCP1,SYT6,TRIM33,TSHB,TSPAN2"
TCGA.DM.A1HB	1	114634398	159782548	5066	0.0116	NEUTRAL	NA	377	Too-Many
TCGA.AG.3906.01A	1	114636315	117604986	224	-0.001	NEUTRAL	NA	25	"AMPD1,ATP1A1,BCAS2,C1orf137,CASQ2,CD101,CD2,CD58,CSDE1,DENND2C,IGSF3,MAB21L3,NGF,NHLH2,NRAS,PTGFRN,SIKE1,SLC22A15,SYCP1,SYT6,TRIM33,TSHB,TSPAN2,TTF2,VANGL1"
TCGA.AG.4021	1	114959887	168983881	8834	0.0039	NEUTRAL	NA	482	Too-Many
TCGA.AA.A010.01A	1	114962936	115118189	16	-0.0799	NEUTRAL	NA	2	"BCAS2,TRIM33"
TCGA.AA.A00N.01A	1	115005705	115053195	4	-0.4323	NEUTRAL	NA	1	TRIM33
TCGA.AG.A01W.01A	1	115032709	117445509	185	-0.2443	NEUTRAL	NA	21	"AMPD1,ATP1A1,BCAS2,C1orf137,CASQ2,CD2,CD58,CSDE1,DENND2C,IGSF3,MAB21L3,NGF,NHLH2,NRAS,SIKE1,SLC22A15,SYCP1,TRIM33,TSHB,TSPAN2,VANGL1"
TCGA.AA.A00D.01A	1	115123870	115399798	61	-0.4729	NEUTRAL	NA	7	"AMPD1,BCAS2,CSDE1,DENND2C,NRAS,SIKE1,SYCP1"
TCGA.AA.A02K.01A	1	115216209	115231186	12	0.1946	NEUTRAL	NA	1	AMPD1
TCGA.D5.6536	1	115217726	119232909	1399	0.003	NEUTRAL	NA	28	"AMPD1,ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,CSDE1,FAM46C,GDAP2,IGSF3,MAB21L3,MAN1A2,NGF,NHLH2,NRAS,PTGFRN,SIKE1,SLC22A15,SPAG17,SYCP1,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WDR3"
TCGA.AA.A00N.01A	1	115229314	115238029	4	-0.0255	NEUTRAL	NA	1	AMPD1
TCGA.AG.A01L.01A	1	115231135	146765280	642	-0.143	NEUTRAL	NA	75	"ADAM30,AMPD1,ANKRD34A,ANKRD35,ATP1A1,C1orf137,CASQ2,CD101,CD160,CD2,CD58,CHD1L,CSDE1,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,FMO5,GDAP2,GPR89A,HAO2,HFE2,HMGCS2,HSD3B1,HSD3B2,IGSF3,ITGA10,LIX1L,MAB21L3,MAN1A2,NBPF10,NBPF11,NBPF12,NBPF20,NBPF7,NBPF8,NBPF9,NGF,NHLH2,NOTCH2,NOTCH2NL,NRAS,NUDT17,PDE4DIP,PDZK1,PEX11B,PHGDH,PIAS3,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4G,PRKAB2,PTGFRN,RBM8A,REG4,RNF115,SEC22B,SIKE1,SLC22A15,SPAG17,SYCP1,TBX15,TRIM45,TSHB,TSPAN2,TTF2,TXNIP,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AA.A02K.01A	1	115235962	120165390	320	-0.1486	NEUTRAL	NA	34	"AMPD1,ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,CSDE1,FAM46C,GDAP2,HAO2,HSD3B1,HSD3B2,IGSF3,MAB21L3,MAN1A2,NGF,NHLH2,NRAS,PTGFRN,SIKE1,SLC22A15,SPAG17,SYCP1,TBX15,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.F4.6808	1	115236056	179079189	11927	-0.0364	NEUTRAL	NA	540	Too-Many
TCGA.CK.5914.01A	1	115272852	115284106	9	-0.063	NEUTRAL	NA	1	CSDE1
TCGA.AA.A00N.01A	1	115275183	115284106	8	0.1441	NEUTRAL	NA	1	CSDE1
TCGA.CK.4952.01A	1	115325438	183134887	4642	-0.0949	NEUTRAL	NA	564	Too-Many
TCGA.AA.A00Q.01A	1	115399798	115487486	20	-0.3438	NEUTRAL	NA	1	SYCP1
TCGA.AA.A00D.01A	1	115401131	115488855	20	-0.0985	NEUTRAL	NA	1	SYCP1
TCGA.DC.6160.01A	1	115406252	117288772	99	0.1292	NEUTRAL	NA	13	"ATP1A1,C1orf137,CASQ2,CD58,IGSF3,MAB21L3,NGF,NHLH2,SLC22A15,SYCP1,TSHB,TSPAN2,VANGL1"
TCGA.AG.3909.01A	1	115417056	115489808	18	-0.2789	NEUTRAL	NA	1	SYCP1
TCGA.AA.A01C.01A	1	115418648	145328371	446	-0.0757	NEUTRAL	NA	50	"ADAM30,ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,IGSF3,MAB21L3,MAN1A2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NGF,NHLH2,NOTCH2,NOTCH2NL,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,PTGFRN,REG4,SEC22B,SLC22A15,SPAG17,SYCP1,TBX15,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.CK.5914.01A	1	115454048	115468882	5	0.2703	NEUTRAL	NA	1	SYCP1
TCGA.AA.A010.01A	1	115456545	116382057	41	0.0155	NEUTRAL	NA	7	"CASQ2,NGF,NHLH2,SYCP1,TSHB,TSPAN2,VANGL1"
TCGA.EI.6883	1	115459173	249198691	35901	0.0024	NEUTRAL	NA	986	Too-Many
TCGA.AG.3909.01A	1	115520111	116670036	50	0.1155	NEUTRAL	NA	9	"CASQ2,MAB21L3,NGF,NHLH2,SLC22A15,SYCP1,TSHB,TSPAN2,VANGL1"
TCGA.AZ.4684.01A	1	115576637	117712660	154	-0.4253	NEUTRAL	NA	18	"ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,IGSF3,MAB21L3,NGF,NHLH2,PTGFRN,SLC22A15,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1"
TCGA.DM.A28M.01A	1	115595964	117753365	154	0.2037	NEUTRAL	NA	17	"ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,IGSF3,MAB21L3,NGF,NHLH2,PTGFRN,SLC22A15,TRIM45,TSPAN2,TTF2,VANGL1,VTCN1"
TCGA.AG.A02G.01A	1	115828664	145530215	455	0.3522	NEUTRAL	NA	55	"ADAM30,ANKRD34A,ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HFE2,HMGCS2,HSD3B1,HSD3B2,IGSF3,ITGA10,LIX1L,MAB21L3,MAN1A2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NGF,NHLH2,NOTCH2,NOTCH2NL,PDE4DIP,PEX11B,PHGDH,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4G,PTGFRN,RBM8A,REG4,SEC22B,SLC22A15,SPAG17,TBX15,TRIM45,TTF2,TXNIP,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.CI.6621	1	116165272	145009381	1498	-0.2978	NEUTRAL	NA	43	"ADAM30,ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,IGSF3,MAB21L3,MAN1A2,NBPF20,NBPF7,NBPF8,NBPF9,NHLH2,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,PTGFRN,REG4,SLC22A15,SPAG17,TBX15,TRIM45,TTF2,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AA.A01K.01A	1	116202224	153906562	1337	-0.0938	NEUTRAL	NA	222	Too-Many
TCGA.AA.A00Q.01A	1	116310882	116666640	9	-0.0821	NEUTRAL	NA	4	"CASQ2,MAB21L3,NHLH2,SLC22A15"
TCGA.AG.3891.01A	1	116310882	120056428	242	-0.1548	NEUTRAL	NA	24	"ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,FAM46C,GDAP2,HAO2,HSD3B1,HSD3B2,IGSF3,MAB21L3,MAN1A2,NHLH2,PTGFRN,SLC22A15,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3"
TCGA.DM.A288	1	116348426	249198691	35505	-0.0023	NEUTRAL	NA	980	Too-Many
TCGA.AA.A00D.01A	1	116380579	117121964	39	-0.2444	NEUTRAL	NA	6	"ATP1A1,CD58,IGSF3,MAB21L3,NHLH2,SLC22A15"
TCGA.DM.A28F	1	116484932	249198691	35434	0.3474	NEUTRAL	NA	979	Too-Many
TCGA.CK.5914.01A	1	116519205	116666640	15	0.3595	NEUTRAL	NA	2	"MAB21L3,SLC22A15"
TCGA.AA.A010.01A	1	116562166	116916788	18	0.201	NEUTRAL	NA	3	"ATP1A1,MAB21L3,SLC22A15"
TCGA.CK.5914.01A	1	116670036	117119902	33	-0.1808	NEUTRAL	NA	4	"ATP1A1,CD58,IGSF3,MAB21L3"
TCGA.AA.A010.01A	1	116926594	116933357	8	-0.4396	NEUTRAL	NA	1	ATP1A1
TCGA.AG.A00C.01A	1	116926594	117119902	26	0.3067	NEUTRAL	NA	3	"ATP1A1,CD58,IGSF3"
TCGA.AG.4009.01A	1	116946951	117753365	73	0.0194	NEUTRAL	NA	10	"ATP1A1,C1orf137,CD101,CD2,CD58,IGSF3,PTGFRN,TRIM45,TTF2,VTCN1"
TCGA.AA.A010.01A	1	116952670	117086906	6	-0.1395	NEUTRAL	NA	1	CD58
TCGA.AM.5821	1	117006584	249198691	35216	-0.0002	NEUTRAL	NA	976	Too-Many
TCGA.AA.A00N.01A	1	117121964	118488664	118	0.0607	NEUTRAL	NA	12	"C1orf137,CD101,CD2,FAM46C,GDAP2,IGSF3,MAN1A2,PTGFRN,TRIM45,TTF2,VTCN1,WDR3"
TCGA.AG.A00C.01A	1	117121964	120165291	197	-0.1595	NEUTRAL	NA	19	"C1orf137,CD101,CD2,FAM46C,GDAP2,HAO2,HSD3B1,HSD3B2,IGSF3,MAN1A2,PTGFRN,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AF.2693	1	117127881	118066458	305	0.3551	NEUTRAL	NA	9	"C1orf137,CD101,CD2,IGSF3,MAN1A2,PTGFRN,TRIM45,TTF2,VTCN1"
TCGA.G4.6298	1	117157371	117376188	65	0.3364	NEUTRAL	NA	3	"C1orf137,CD2,IGSF3"
TCGA.AG.3909.01A	1	117208831	117516790	13	-0.3592	NEUTRAL	NA	4	"C1orf137,CD2,IGSF3,PTGFRN"
TCGA.CK.5914.01A	1	117208831	117516790	18	0.0067	NEUTRAL	NA	4	"C1orf137,CD2,IGSF3,PTGFRN"
TCGA.AA.3509.01A	1	117214319	117302987	8	-0.2396	NEUTRAL	NA	2	"C1orf137,CD2"
TCGA.AG.4015	1	117287642	117548321	101	0.0947	NEUTRAL	NA	3	"CD101,CD2,PTGFRN"
TCGA.DC.6160.01A	1	117293356	119759517	180	-0.328	NEUTRAL	NA	13	"CD101,CD2,FAM46C,GDAP2,MAN1A2,PTGFRN,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3"
TCGA.AA.3930.01A	1	117307059	145438776	344	-0.0687	NEUTRAL	NA	39	"ADAM30,CD101,CD2,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HFE2,HMGCS2,HSD3B1,HSD3B2,MAN1A2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,PTGFRN,REG4,SEC22B,SPAG17,TBX15,TRIM45,TTF2,TXNIP,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AF.6136	1	117423441	117879065	188	0.2045	NEUTRAL	NA	5	"CD101,PTGFRN,TRIM45,TTF2,VTCN1"
TCGA.NH.A6GA	1	117445242	161282383	4661	0.0239	NEUTRAL	NA	406	Too-Many
TCGA.G4.6298	1	117457863	118411514	344	0.2902	NEUTRAL	NA	8	"CD101,FAM46C,GDAP2,MAN1A2,PTGFRN,TRIM45,TTF2,VTCN1"
TCGA.AG.A01W.01A	1	117491752	117764688	10	-0.2653	NEUTRAL	NA	5	"CD101,PTGFRN,TRIM45,TTF2,VTCN1"
TCGA.AG.4015	1	117554420	144549928	950	-0.3871	NEUTRAL	NA	29	"ADAM30,CD101,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,MAN1A2,NBPF20,NBPF7,NOTCH2,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AG.3906.01A	1	117616220	117663319	26	-0.3971	NEUTRAL	NA	2	"TRIM45,TTF2"
TCGA.AA.A004.01A	1	117619215	144903050	274	0.2512	NEUTRAL	NA	31	"ADAM30,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,MAN1A2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AG.3909.01A	1	117633103	117637216	5	-0.2293	NEUTRAL	NA	1	TTF2
TCGA.AA.A02H.01A	1	117637859	145311794	302	0.1229	NEUTRAL	NA	34	"ADAM30,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,MAN1A2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SEC22B,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AG.3906.01A	1	117690228	117948133	8	0.0433	NEUTRAL	NA	2	"MAN1A2,VTCN1"
TCGA.AG.3909.01A	1	117690228	118454574	35	0.0675	NEUTRAL	NA	4	"FAM46C,GDAP2,MAN1A2,VTCN1"
TCGA.AZ.4684.01A	1	117715728	119467258	108	0.1575	NEUTRAL	NA	7	"FAM46C,GDAP2,MAN1A2,SPAG17,TBX15,VTCN1,WDR3"
TCGA.AG.A01W.01A	1	117786337	118250599	18	0.1343	NEUTRAL	NA	2	"FAM46C,MAN1A2"
TCGA.CK.5914.01A	1	117910805	117984824	6	-0.3978	NEUTRAL	NA	1	MAN1A2
TCGA.AA.3862.01A	1	117957287	120464283	178	-0.3179	NEUTRAL	NA	17	"ADAM30,FAM46C,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,MAN1A2,NBPF7,NOTCH2,PHGDH,REG4,SPAG17,TBX15,WARS2,WDR3,ZNF697"
TCGA.AA.A00A.01A	1	117984824	118514446	53	-0.4594	NEUTRAL	NA	5	"FAM46C,GDAP2,MAN1A2,SPAG17,WDR3"
TCGA.AG.3906.01A	1	118003063	118462765	25	-0.075	NEUTRAL	NA	3	"FAM46C,GDAP2,MAN1A2"
TCGA.AG.4009.01A	1	118008902	120056428	122	0.0142	NEUTRAL	NA	10	"FAM46C,GDAP2,HAO2,HSD3B1,HSD3B2,MAN1A2,SPAG17,TBX15,WARS2,WDR3"
TCGA.AA.A010.01A	1	118041966	118454574	21	-0.1774	NEUTRAL	NA	3	"FAM46C,GDAP2,MAN1A2"
TCGA.AF.2693	1	118067305	118252256	92	-0.071	NEUTRAL	NA	2	"FAM46C,MAN1A2"
TCGA.AA.3941	1	118083867	118327586	112	0.3303	NEUTRAL	NA	1	FAM46C
TCGA.AA.3850	1	118083867	118384260	127	0.22835	NEUTRAL	NA	1	FAM46C
TCGA.CK.5914.01A	1	118165443	118170619	5	-0.4008	NEUTRAL	NA	1	FAM46C
TCGA.A6.4105	1	118185072	249198691	34955	0.0055	NEUTRAL	NA	965	Too-Many
TCGA.AG.A01W.01A	1	118256087	119969990	103	-0.2265	NEUTRAL	NA	7	"GDAP2,HAO2,HSD3B2,SPAG17,TBX15,WARS2,WDR3"
TCGA.AA.3941	1	118336044	119497153	300	-0.4207	NEUTRAL	NA	4	"GDAP2,SPAG17,TBX15,WDR3"
TCGA.AG.3584	1	118367300	249198691	34865	0.0141	NEUTRAL	NA	965	Too-Many
TCGA.AA.3850	1	118389600	119163196	186	-0.51315	NEUTRAL	NA	3	"GDAP2,SPAG17,WDR3"
TCGA.AA.3982	1	118411037	119497153	283	-0.3441	NEUTRAL	NA	4	"GDAP2,SPAG17,TBX15,WDR3"
TCGA.CK.5914.01A	1	118413123	118455145	11	0.339	NEUTRAL	NA	1	GDAP2
TCGA.G4.6298	1	118421108	199598782	16876	-0.0069	NEUTRAL	NA	595	Too-Many
TCGA.EI.6509	1	118450250	249198691	34862	0.0267	NEUTRAL	NA	965	Too-Many
TCGA.AA.A010.01A	1	118455145	118526397	35	0.331	NEUTRAL	NA	3	"GDAP2,SPAG17,WDR3"
TCGA.AG.3906.01A	1	118475906	118485009	9	-0.4312	NEUTRAL	NA	1	WDR3
TCGA.CK.5914.01A	1	118483401	118497147	16	-0.0072	NEUTRAL	NA	2	"SPAG17,WDR3"
TCGA.AG.3906.01A	1	118485972	120056428	89	-0.0969	NEUTRAL	NA	7	"HAO2,HSD3B1,HSD3B2,SPAG17,TBX15,WARS2,WDR3"
TCGA.AG.3909.01A	1	118490978	118493385	3	-0.1388	NEUTRAL	NA	1	WDR3
TCGA.AG.3909.01A	1	118494570	120572472	158	0.1647	NEUTRAL	NA	14	"ADAM30,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF7,NOTCH2,PHGDH,REG4,SPAG17,TBX15,WARS2,WDR3,ZNF697"
TCGA.CK.5914.01A	1	118497863	118579346	28	0.3172	NEUTRAL	NA	2	"SPAG17,WDR3"
TCGA.AZ.4615	1	118507892	119680996	324	0.0256	NEUTRAL	NA	3	"SPAG17,TBX15,WARS2"
TCGA.AA.A010.01A	1	118527256	118581874	18	-0.4445	NEUTRAL	NA	1	SPAG17
TCGA.A6.A56B	1	118549721	145013753	661	0.0116	NEUTRAL	NA	24	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SPAG17,TBX15,WARS2,ZNF697"
TCGA.CK.5914.01A	1	118581874	118634177	12	-0.2112	NEUTRAL	NA	1	SPAG17
TCGA.AA.A00A.01A	1	118634177	144877044	121	-0.4449	NEUTRAL	NA	24	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SPAG17,TBX15,WARS2,ZNF697"
TCGA.CK.5914.01A	1	118634500	118693128	7	0.2057	NEUTRAL	NA	1	SPAG17
TCGA.AA.A010.01A	1	118640283	119474205	16	-0.2208	NEUTRAL	NA	2	"SPAG17,TBX15"
TCGA.DM.A28M.01A	1	118644323	169951064	3313	0.1637	NEUTRAL	NA	465	Too-Many
TCGA.AA.3561	1	118699632	145395439	638	-0.0098	NEUTRAL	NA	27	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SEC22B,SPAG17,TBX15,WARS2,ZNF697"
TCGA.DM.A1HA	1	118908372	249198691	34752	-0.0246	NEUTRAL	NA	962	Too-Many
TCGA.EI.6885	1	118929583	144916994	561	-0.021	NEUTRAL	NA	23	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,TBX15,WARS2,ZNF697"
TCGA.G5.6233	1	119087111	249198691	34708	0.1394	NEUTRAL	NA	962	Too-Many
TCGA.AA.3850	1	119267620	119491732	64	-0.42745	NEUTRAL	NA	1	TBX15
TCGA.D5.6536	1	119414002	119486002	35	0.0326	NEUTRAL	NA	1	TBX15
TCGA.AG.A00Y.01A	1	119427378	144865800	132	0.1622	NEUTRAL	NA	23	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,TBX15,WARS2,ZNF697"
TCGA.AZ.4684.01A	1	119469093	144909818	147	-0.32	NEUTRAL	NA	23	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,TBX15,WARS2,ZNF697"
TCGA.AA.3850	1	119491763	158328293	2969	0.17665	NEUTRAL	NA	317	Too-Many
TCGA.AA.3941	1	119500772	121168847	361	0.1875	NEUTRAL	NA	14	"ADAM30,FAM72B,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF7,NOTCH2,PHGDH,REG4,TBX15,WARS2,ZNF697"
TCGA.AA.3982	1	119500772	157178415	2483	0.1596	NEUTRAL	NA	305	Too-Many
TCGA.CK.5914.01A	1	119575522	119923231	7	-0.4161	NEUTRAL	NA	2	"HAO2,WARS2"
TCGA.CM.4752	1	119583967	249198691	34525	-0.0014	NEUTRAL	NA	961	Too-Many
TCGA.A6.5660	1	119610763	249198691	34432	0.208	NEUTRAL	NA	961	Too-Many
TCGA.DC.4749	1	119657937	249198691	34541	0.2979	NEUTRAL	NA	961	Too-Many
TCGA.AA.3522	1	119680996	249198691	34496	0.0108	NEUTRAL	NA	961	Too-Many
TCGA.A6.2671	1	119751001	198406353	16161	0	NEUTRAL	NA	588	Too-Many
TCGA.D5.6536	1	119761037	119898820	50	-0.0883	NEUTRAL	NA	0	None
TCGA.DC.6160.01A	1	119763547	247180566	8594	0.0844	NEUTRAL	NA	907	Too-Many
TCGA.AG.3594	1	119764786	121207334	305	0.0413	NEUTRAL	NA	12	"ADAM30,FAM72B,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF7,NOTCH2,PHGDH,REG4,ZNF697"
TCGA.AG.3881	1	119824445	145013753	318	-0.3095	NEUTRAL	NA	21	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,ZNF697"
TCGA.AF.2692	1	119840644	249198691	34495	0.3634	NEUTRAL	NA	960	Too-Many
TCGA.DM.A28A	1	119922649	119960375	8	-0.0325	NEUTRAL	NA	2	"HAO2,HSD3B2"
TCGA.AG.A01W.01A	1	120078739	120088011	7	-0.037	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	120094909	120181369	17	-0.4316	NEUTRAL	NA	1	ZNF697
TCGA.CK.5914.01A	1	120165291	120277210	8	-0.3853	NEUTRAL	NA	2	"PHGDH,ZNF697"
TCGA.AA.A02K.01A	1	120166121	120188406	9	0.2898	NEUTRAL	NA	1	ZNF697
TCGA.AG.A00C.01A	1	120166311	120263707	4	0.3576	NEUTRAL	NA	2	"PHGDH,ZNF697"
TCGA.AG.A01W.01A	1	120183284	120188453	5	0.1082	NEUTRAL	NA	1	ZNF697
TCGA.D5.6536	1	120214823	120358924	70	-0.0191	NEUTRAL	NA	3	"HMGCS2,PHGDH,REG4"
TCGA.AG.A01W.01A	1	120238074	120281954	19	-0.1845	NEUTRAL	NA	1	PHGDH
TCGA.AA.A02K.01A	1	120254599	120269412	4	-0.0704	NEUTRAL	NA	1	PHGDH
TCGA.AG.3891.01A	1	120254656	145281341	151	-0.1259	NEUTRAL	NA	19	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HMGCS2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SEC22B"
TCGA.AG.3906.01A	1	120254656	145439480	160	-0.0805	NEUTRAL	NA	22	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HFE2,HMGCS2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SEC22B,TXNIP"
TCGA.AG.4009.01A	1	120263707	120469070	48	0.21	NEUTRAL	NA	6	"ADAM30,HMGCS2,NBPF7,NOTCH2,PHGDH,REG4"
TCGA.AG.A00C.01A	1	120265930	120351261	24	-0.3672	NEUTRAL	NA	3	"HMGCS2,PHGDH,REG4"
TCGA.AG.A01W.01A	1	120284650	120349425	17	0.1204	NEUTRAL	NA	3	"HMGCS2,PHGDH,REG4"
TCGA.AA.A010.01A	1	120293378	120336690	10	0.0206	NEUTRAL	NA	2	"HMGCS2,REG4"
TCGA.AA.A02K.01A	1	120293386	120547902	58	-0.2005	NEUTRAL	NA	5	"ADAM30,HMGCS2,NBPF7,NOTCH2,REG4"
TCGA.A6.2686	1	120328526	144901892	94	-0.0739	NEUTRAL	NA	15	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PPIAL4A,PPIAL4C,PPIAL4G,REG4"
TCGA.AA.A010.01A	1	120377346	120386922	8	0.0912	NEUTRAL	NA	1	NBPF7
TCGA.AA.A00N.01A	1	120377346	120437848	10	-0.1144	NEUTRAL	NA	2	"ADAM30,NBPF7"
TCGA.AG.A00C.01A	1	120377346	120437848	10	0.0384	NEUTRAL	NA	2	"ADAM30,NBPF7"
TCGA.AA.A00Q.01A	1	120378578	120386922	4	0.0084	NEUTRAL	NA	1	NBPF7
TCGA.AA.3860	1	120378701	249198691	34264	0.0224	NEUTRAL	NA	953	Too-Many
TCGA.CK.5914.01A	1	120386922	120478043	18	-0.1076	NEUTRAL	NA	3	"ADAM30,NBPF7,NOTCH2"
TCGA.AA.3967.01A	1	120457927	120547923	34	-0.3466	NEUTRAL	NA	1	NOTCH2
TCGA.AG.A00C.01A	1	120457927	120547923	34	-0.4022	NEUTRAL	NA	1	NOTCH2
TCGA.A6.3808.01A	1	120464283	120529552	25	-0.4114	NEUTRAL	NA	1	NOTCH2
TCGA.AG.4009.01A	1	120471608	145460045	120	-0.0679	NEUTRAL	NA	18	"FAM72B,FAM72C,FAM72D,FCGR1B,HFE2,NBPF10,NBPF20,NBPF8,NBPF9,NOTCH2,NOTCH2NL,PDE4DIP,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4G,SEC22B,TXNIP"
TCGA.AA.A010.01A	1	120496125	144912119	65	-0.104	NEUTRAL	NA	12	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PDE4DIP,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.A6.4107	1	120501711	144849543	31	-0.0006	NEUTRAL	NA	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AG.A01N.01A	1	120510009	153906562	1020	0.1541	NEUTRAL	NA	191	Too-Many
TCGA.F5.6812	1	120523901	249198691	34143	0.0364	NEUTRAL	NA	951	Too-Many
TCGA.AA.A00Q.01A	1	120539628	144852357	13	-0.0298	NEUTRAL	NA	12	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PDE4DIP,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.CK.5914.01A	1	120572472	144619985	21	-0.2779	NEUTRAL	NA	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AA.A00L.01A	1	120572472	144814632	9	0.0583	NEUTRAL	NA	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AG.A00C.01A	1	120572472	144814632	18	0.2755	NEUTRAL	NA	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.A6.5662	1	120586191	249198691	34115	0.0471	NEUTRAL	NA	951	Too-Many
TCGA.AF.6136	1	120586191	249198691	34171	0.1544	NEUTRAL	NA	951	Too-Many
TCGA.D5.6535	1	120687114	249170710	34217	0.2927	NEUTRAL	NA	950	Too-Many
TCGA.F5.6811.01A	1	120737312	195326551	4687	-0.0142	NEUTRAL	NA	563	Too-Many
TCGA.AA.3939.01A	1	120839786	152185515	839	0.3286	NEUTRAL	NA	126	Too-Many
TCGA.AA.A02K.01A	1	120845959	144892131	39	-0.1519	NEUTRAL	NA	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,PDE4DIP,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AA.A00D.01A	1	120934331	144013853	4	0.157	NEUTRAL	NA	4	"FAM72C,FAM72D,FCGR1B,PPIAL4G"
TCGA.AA.A01Q.01A	1	120934331	145555660	119	0.0974	NEUTRAL	NA	22	"ANKRD34A,ANKRD35,FAM72C,FAM72D,FCGR1B,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF8,NBPF9,NOTCH2NL,PDE4DIP,PEX11B,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4G,RBM8A,SEC22B,TXNIP"
TCGA.DY.A1DC	1	121155527	144033938	16	0.1172	NEUTRAL	NA	3	"FAM72C,FAM72D,PPIAL4G"
TCGA.AF.2693	1	121155527	249198691	34216	0.054	NEUTRAL	NA	948	Too-Many
TCGA.F4.6807	1	121155527	249198691	34119	0.0123	NEUTRAL	NA	948	Too-Many
TCGA.D5.6536	1	121184058	144997256	32	0.0959	NEUTRAL	NA	9	"FAM72C,FAM72D,NBPF20,NBPF8,NBPF9,PDE4DIP,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.QG.A5YV	1	121289001	249198691	33903	0.3141	NEUTRAL	NA	948	Too-Many
TCGA.AG.A01W.01A	1	142559116	144127620	70	0.1967	NEUTRAL	NA	3	"FAM72C,FAM72D,PPIAL4G"
TCGA.AG.A036.01A	1	142559116	158984561	2405	0.3629	NEUTRAL	NA	320	Too-Many
TCGA.AG.A032.01A	1	143767592	249210793	7729	0.2053	NEUTRAL	NA	949	Too-Many
TCGA.AG.3909.01A	1	144013853	144816613	6	0.0688	NEUTRAL	NA	5	"NBPF20,NBPF8,NBPF9,PPIAL4A,PPIAL4C"
TCGA.D5.6533	1	144033938	191388292	13955	0.15	NEUTRAL	NA	548	Too-Many
TCGA.5M.AAT4	1	144033938	249198691	34191	0	NEUTRAL	NA	946	Too-Many
TCGA.AY.A69D	1	144033938	249198691	34163	0.2598	NEUTRAL	NA	946	Too-Many
TCGA.AG.A01W.01A	1	144150144	144247063	39	-0.2074	NEUTRAL	NA	1	NBPF20
TCGA.AG.A01W.01A	1	144248159	144253118	9	0.2516	NEUTRAL	NA	1	NBPF20
TCGA.AG.A01W.01A	1	144253503	144269498	6	-0.4077	NEUTRAL	NA	1	NBPF20
TCGA.AG.A01W.01A	1	144290568	144463749	40	-0.0398	NEUTRAL	NA	3	"NBPF20,PPIAL4A,PPIAL4C"
TCGA.AG.A01W.01A	1	144482944	144530058	7	-0.1805	NEUTRAL	NA	1	NBPF20
TCGA.DY.A1DC	1	144549928	145474967	33	-0.4913	NEUTRAL	NA	11	"ANKRD34A,HFE2,NBPF10,NBPF20,NBPF8,NBPF9,NOTCH2NL,PDE4DIP,POLR3GL,SEC22B,TXNIP"
TCGA.A6.3808.01A	1	144814632	145115718	59	-0.167	NEUTRAL	NA	5	"NBPF20,NBPF8,NBPF9,PDE4DIP,SEC22B"
TCGA.AA.3862.01A	1	144814632	147415513	250	0.2166	NEUTRAL	NA	33	"ACP6,ANKRD34A,ANKRD35,BCL9,CD160,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PRKAB2,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AG.A00C.01A	1	144816613	144903050	27	-0.2757	NEUTRAL	NA	4	"NBPF20,NBPF8,NBPF9,PDE4DIP"
TCGA.AA.3967.01A	1	144816613	145290359	62	-0.0334	NEUTRAL	NA	6	"NBPF20,NBPF8,NBPF9,NOTCH2NL,PDE4DIP,SEC22B"
TCGA.AA.3861.01A	1	144828561	147415513	248	0.1562	NEUTRAL	NA	33	"ACP6,ANKRD34A,ANKRD35,BCL9,CD160,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PRKAB2,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AA.3973	1	144832254	144957687	16	-0.2055	NEUTRAL	NA	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.DM.A1D4	1	144832254	145013753	21	-0.0755	NEUTRAL	NA	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.CM.6163	1	144832254	217660099	22873	0.354	NEUTRAL	NA	732	Too-Many
TCGA.A6.6654	1	144832254	249198691	34096	0.3157	NEUTRAL	NA	946	Too-Many
TCGA.AG.4015	1	144832254	249198691	34076	0.0246	NEUTRAL	NA	946	Too-Many
TCGA.EI.7002	1	144832254	249198691	34119	0.3104	NEUTRAL	NA	946	Too-Many
TCGA.CA.5254	1	144849543	217002845	22513	0.3246	NEUTRAL	NA	731	Too-Many
TCGA.CM.6167	1	144849543	234726100	28973	0.3441	NEUTRAL	NA	842	Too-Many
TCGA.A6.2674	1	144849543	249198691	34177	0.145	NEUTRAL	NA	946	Too-Many
TCGA.F4.6855	1	144849543	249198691	34097	0.291	NEUTRAL	NA	946	Too-Many
TCGA.QL.A97D	1	144849543	249198691	34187	0.1906	NEUTRAL	NA	946	Too-Many
TCGA.AA.3980.01A	1	144852357	145109524	53	0.0215	NEUTRAL	NA	4	"NBPF20,NBPF9,PDE4DIP,SEC22B"
TCGA.BM.6198	1	144869083	145009381	17	0.01715	NEUTRAL	NA	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.G4.6317	1	144873326	249198691	34193	-0.2976	NEUTRAL	NA	946	Too-Many
TCGA.AA.3667	1	144879980	145416055	20	-0.5074	NEUTRAL	NA	7	"HFE2,NBPF10,NBPF20,NBPF9,NOTCH2NL,PDE4DIP,SEC22B"
TCGA.AG.A015.01A	1	144880704	145096495	33	0.0348	NEUTRAL	NA	4	"NBPF20,NBPF9,PDE4DIP,SEC22B"
TCGA.AA.A02K.01A	1	144892479	145115694	28	0.1019	NEUTRAL	NA	4	"NBPF20,NBPF9,PDE4DIP,SEC22B"
TCGA.AD.6965	1	144893049	249198691	34103	-0.2465	NEUTRAL	NA	946	Too-Many
TCGA.AG.3732	1	144896318	249198691	34086	0.0202	NEUTRAL	NA	946	Too-Many
TCGA.AG.3909.01A	1	144904587	145115718	32	-0.5077	NEUTRAL	NA	4	"NBPF20,NBPF9,PDE4DIP,SEC22B"
TCGA.AA.A00N.01A	1	144904587	145509808	67	-0.2305	NEUTRAL	NA	12	"ANKRD34A,HFE2,LIX1L,NBPF10,NBPF20,NBPF9,NOTCH2NL,PDE4DIP,POLR3GL,RBM8A,SEC22B,TXNIP"
TCGA.AA.A004.01A	1	144904587	150235401	318	-0.4825	NEUTRAL	NA	61	"ACP6,ANKRD34A,ANKRD35,ANP32E,BCL9,BOLA1,CA14,CD160,CHD1L,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,ITGA10,LIX1L,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,OTUD7B,PDE4DIP,PDZK1,PEX11B,PIAS3,PLEKHO1,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,RBM8A,RNF115,SEC22B,SF3B4,SV2A,TXNIP,VPS45"
TCGA.AG.A00C.01A	1	144904587	151009121	512	0.1314	NEUTRAL	NA	83	"ACP6,ADAMTSL4,ANKRD34A,ANKRD35,ANP32E,ANXA9,APH1A,ARNT,BCL9,BNIPL,BOLA1,C1orf54,CA14,CD160,CERS2,CHD1L,CIART,CTSK,CTSS,ECM1,ENSA,FAM63A,FCGR1A,FMO5,GJA5,GJA8,GOLPH3L,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,HORMAD1,ITGA10,LIX1L,MCL1,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,OTUD7B,PDE4DIP,PDZK1,PEX11B,PIAS3,PLEKHO1,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,PRUNE,RBM8A,RNF115,RPRD2,SEC22B,SETDB1,SF3B4,SV2A,TARS2,TXNIP,VPS45"
TCGA.AA.A017.01A	1	144904587	152185515	757	-0.2208	NEUTRAL	NA	121	Too-Many
TCGA.AA.A02E.01A	1	144904587	152195545	762	0.0747	NEUTRAL	NA	121	Too-Many
TCGA.AZ.4684.01A	1	144911836	145761139	151	0.1353	NEUTRAL	NA	21	"ANKRD34A,ANKRD35,CD160,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.CK.5914.01A	1	144916538	145074911	19	-0.1734	NEUTRAL	NA	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.A00D.01A	1	144930546	150595231	354	-0.3604	NEUTRAL	NA	72	"ACP6,ADAMTSL4,ANKRD34A,ANKRD35,ANP32E,APH1A,BCL9,BOLA1,C1orf54,CA14,CD160,CHD1L,CIART,ECM1,ENSA,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,ITGA10,LIX1L,MCL1,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,OTUD7B,PDE4DIP,PDZK1,PEX11B,PIAS3,PLEKHO1,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,RBM8A,RNF115,RPRD2,SEC22B,SF3B4,SV2A,TARS2,TXNIP,VPS45"
TCGA.A6.2686	1	144938878	249198691	34129	-0.0069	NEUTRAL	NA	946	Too-Many
TCGA.AA.3854	1	144938878	249198691	34203	0.1998	NEUTRAL	NA	946	Too-Many
TCGA.AA.A00Q.01A	1	144952165	145747017	123	-0.4738	NEUTRAL	NA	21	"ANKRD34A,ANKRD35,CD160,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AA.A00K.01A	1	144952165	152187972	700	-0.2734	NEUTRAL	NA	121	Too-Many
TCGA.AA.A00L.01A	1	144955157	145706626	123	-0.2962	NEUTRAL	NA	20	"ANKRD34A,ANKRD35,CD160,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.DM.A1D6	1	144957687	249198691	34182	0.0421	NEUTRAL	NA	946	Too-Many
TCGA.AF.4110	1	144957814	150800654	559	0.2226	NEUTRAL	NA	77	"ACP6,ADAMTSL4,ANKRD34A,ANKRD35,ANP32E,APH1A,ARNT,BCL9,BOLA1,C1orf54,CA14,CD160,CHD1L,CIART,CTSK,CTSS,ECM1,ENSA,FCGR1A,FMO5,GJA5,GJA8,GOLPH3L,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,HORMAD1,ITGA10,LIX1L,MCL1,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,OTUD7B,PDE4DIP,PDZK1,PEX11B,PIAS3,PLEKHO1,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,RBM8A,RNF115,RPRD2,SEC22B,SF3B4,SV2A,TARS2,TXNIP,VPS45"
TCGA.AA.3811	1	144957814	153286217	1306	0.0014	NEUTRAL	NA	161	Too-Many
TCGA.AA.3949	1	144957814	169927575	7358	0.0408	NEUTRAL	NA	447	Too-Many
TCGA.AA.3952	1	144957814	189690017	13478	0.0498	NEUTRAL	NA	547	Too-Many
TCGA.AA.3517	1	144957814	249198691	34148	0.3565	NEUTRAL	NA	946	Too-Many
TCGA.AA.3837	1	144957814	249198691	34201	-0.2842	NEUTRAL	NA	946	Too-Many
TCGA.EI.6885	1	144957814	249198691	34091	0.2437	NEUTRAL	NA	946	Too-Many
TCGA.G4.6322	1	144957814	249198691	34181	-0.0235	NEUTRAL	NA	946	Too-Many
TCGA.G4.6626	1	144957814	249198691	34194	-0.0279	NEUTRAL	NA	946	Too-Many
TCGA.AG.3883	1	145004742	146881585	198	0.2045	NEUTRAL	NA	27	"ANKRD34A,ANKRD35,CD160,CHD1L,FMO5,GPR89A,HFE2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF20,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PRKAB2,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AA.3819	1	145004742	163550074	4605	0.0273	NEUTRAL	NA	404	Too-Many
TCGA.A6.2681	1	145004742	225160895	25378	0.3442	NEUTRAL	NA	767	Too-Many
TCGA.A6.2680	1	145004742	249198691	34117	0.2814	NEUTRAL	NA	946	Too-Many
TCGA.A6.3807	1	145009381	156378424	1860	0.3051	NEUTRAL	NA	266	Too-Many
TCGA.A6.2683	1	145009381	249198691	34132	0.2887	NEUTRAL	NA	946	Too-Many
TCGA.AA.3712	1	145013753	147825661	406	0.0213	NEUTRAL	NA	33	"ACP6,ANKRD34A,ANKRD35,BCL9,CD160,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PRKAB2,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.F5.6813	1	145013753	241669248	31831	0.3305	NEUTRAL	NA	867	Too-Many
TCGA.A6.6137	1	145013753	249198691	34189	0	NEUTRAL	NA	946	Too-Many
TCGA.CA.5255	1	145013753	249198691	34069	0.1768	NEUTRAL	NA	946	Too-Many
TCGA.CI.6621	1	145013753	249198691	34117	0.1587	NEUTRAL	NA	946	Too-Many
TCGA.CI.6623	1	145013753	249198691	34126	0.1387	NEUTRAL	NA	946	Too-Many
TCGA.F4.6460	1	145013753	249198691	34190	0.0999	NEUTRAL	NA	946	Too-Many
TCGA.G4.6303	1	145013753	249198691	34185	0.2873	NEUTRAL	NA	946	Too-Many
TCGA.G5.6572	1	145013753	249198691	34121	0.3768	NEUTRAL	NA	946	Too-Many
TCGA.AA.A00A.01A	1	145015813	145826807	131	-0.372	NEUTRAL	NA	22	"ANKRD34A,ANKRD35,CD160,GPR89A,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AG.A015.01A	1	145103861	145459614	25	0.374	NEUTRAL	NA	8	"HFE2,NBPF10,NBPF20,NBPF9,NOTCH2NL,POLR3GL,SEC22B,TXNIP"
TCGA.AA.A02K.01A	1	145248800	145311791	9	-0.3589	NEUTRAL	NA	4	"NBPF10,NBPF20,NBPF9,NOTCH2NL"
TCGA.AG.3891.01A	1	145281912	150082572	269	0.157	NEUTRAL	NA	56	"ACP6,ANKRD34A,ANKRD35,BCL9,BOLA1,CD160,CHD1L,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,ITGA10,LIX1L,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,OTUD7B,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,RBM8A,RNF115,SF3B4,SV2A,TXNIP,VPS45"
TCGA.AA.A01I.01A	1	145298257	145524992	34	-0.3309	NEUTRAL	NA	11	"ANKRD34A,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF9,PEX11B,POLR3GL,RBM8A,TXNIP"
TCGA.AG.A02X.01A	1	145298257	145761139	115	-0.4376	NEUTRAL	NA	18	"ANKRD34A,ANKRD35,CD160,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF9,NUDT17,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,TXNIP"
TCGA.AA.3967.01A	1	145298257	152128743	733	0.3416	NEUTRAL	NA	117	Too-Many
TCGA.AA.3549	1	145382123	149114628	409	0.0408	NEUTRAL	NA	37	"ACP6,ANKRD34A,ANKRD35,BCL9,CD160,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NUDT17,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,RBM8A,RNF115,TXNIP"
TCGA.D5.6931	1	145382123	161937891	3769	0.0001	NEUTRAL	NA	388	Too-Many
TCGA.AA.3867	1	145382123	185426381	12210	-0.079	NEUTRAL	NA	536	Too-Many
TCGA.EI.6511	1	145382123	189022972	13304	0.0104	NEUTRAL	NA	544	Too-Many
TCGA.AA.3866	1	145382123	189147179	13327	0.1435	NEUTRAL	NA	544	Too-Many
TCGA.AA.3872	1	145382123	189147179	13335	0.2048	NEUTRAL	NA	544	Too-Many
TCGA.AA.3488	1	145382123	209800229	19869	0.3209	NEUTRAL	NA	689	Too-Many
TCGA.A6.A56B	1	145382123	226539749	25514	0.3179	NEUTRAL	NA	777	Too-Many
TCGA.4N.A93T	1	145382123	249198691	34181	0.0067	NEUTRAL	NA	943	Too-Many
TCGA.AG.3881	1	145382123	249198691	34180	0.295	NEUTRAL	NA	943	Too-Many
TCGA.AZ.6600	1	145382123	249198691	34173	0.232	NEUTRAL	NA	943	Too-Many
TCGA.G4.6297	1	145382123	249198691	34175	0.3729	NEUTRAL	NA	943	Too-Many
TCGA.DM.A1D9	1	145394954	193150872	14426	0.0122	NEUTRAL	NA	555	Too-Many
TCGA.EI.6506	1	145394954	205185103	18255	0.1583	NEUTRAL	NA	641	Too-Many
TCGA.5M.AAT5	1	145394954	249198691	34167	0.025	NEUTRAL	NA	943	Too-Many
TCGA.A6.6649	1	145394954	249198691	34186	0.3652	NEUTRAL	NA	943	Too-Many
TCGA.CM.6164	1	145394954	249198691	34116	-0.1839	NEUTRAL	NA	943	Too-Many
TCGA.AA.3848	1	145395439	222788061	24698	0.0477	NEUTRAL	NA	746	Too-Many
TCGA.AA.3688	1	145395439	249198691	34196	0.3342	NEUTRAL	NA	943	Too-Many
TCGA.AZ.4615	1	145395439	249198691	34156	-0.002	NEUTRAL	NA	943	Too-Many
TCGA.D5.5540	1	145395439	249198691	34160	0.0082	NEUTRAL	NA	943	Too-Many
TCGA.DC.6155	1	145395439	249198691	34018	0.1295	NEUTRAL	NA	943	Too-Many
TCGA.AF.2687	1	145395603	186547332	12491	0.1086	NEUTRAL	NA	542	Too-Many
TCGA.AG.3882	1	145395603	195938325	15274	0.2717	NEUTRAL	NA	555	Too-Many
TCGA.AA.A02K.01A	1	145414731	145752392	109	0.1672	NEUTRAL	NA	17	"ANKRD34A,ANKRD35,CD160,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NUDT17,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,TXNIP"
TCGA.AG.A025.01A	1	145414749	145684565	100	-0.4592	NEUTRAL	NA	15	"ANKRD34A,ANKRD35,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NUDT17,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,TXNIP"
TCGA.AA.3980.01A	1	145414749	150234507	285	0.1764	NEUTRAL	NA	58	"ACP6,ANKRD34A,ANKRD35,ANP32E,BCL9,BOLA1,CA14,CD160,CHD1L,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,ITGA10,LIX1L,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NUDT17,OTUD7B,PDZK1,PEX11B,PIAS3,PLEKHO1,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,RBM8A,RNF115,SF3B4,SV2A,TXNIP,VPS45"
TCGA.AA.A02H.01A	1	145414749	152060435	707	-0.2069	NEUTRAL	NA	115	Too-Many
TCGA.DM.A28A	1	145416055	249198691	34111	0.0358	NEUTRAL	NA	943	Too-Many
TCGA.CK.5914.01A	1	145416286	145527564	36	-0.4473	NEUTRAL	NA	10	"ANKRD34A,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,PEX11B,POLR3GL,RBM8A,TXNIP"
TCGA.AA.3667	1	145416583	166260510	5778	0.099	NEUTRAL	NA	410	Too-Many
TCGA.AU.3779	1	145434930	249168609	34166	0.0446	NEUTRAL	NA	942	Too-Many
TCGA.NH.A50T	1	145434930	249198691	33918	0.2949	NEUTRAL	NA	942	Too-Many
TCGA.AA.3930.01A	1	145439480	145762072	111	0.3518	NEUTRAL	NA	16	"ANKRD34A,ANKRD35,CD160,ITGA10,LIX1L,NBPF10,NBPF20,NUDT17,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,TXNIP"
TCGA.AG.3906.01A	1	145439780	145474727	12	0.2315	NEUTRAL	NA	5	"ANKRD34A,NBPF10,NBPF20,POLR3GL,TXNIP"
TCGA.AD.6901	1	145446284	194322243	14717	0.0441	NEUTRAL	NA	553	Too-Many
TCGA.DY.A0XA	1	145446284	249198691	34126	0.0191	NEUTRAL	NA	941	Too-Many
TCGA.AH.6544	1	145454317	174476713	8652	0.178	NEUTRAL	NA	473	Too-Many
TCGA.AG.A015.01A	1	145460045	145533055	27	-0.002	NEUTRAL	NA	8	"ANKRD34A,ITGA10,LIX1L,NBPF10,NBPF20,PEX11B,POLR3GL,RBM8A"
TCGA.DY.A1DC	1	145479218	164096602	4739	-0.0052	NEUTRAL	NA	397	Too-Many
TCGA.AA.3968	1	145479218	228069440	26194	0.103	NEUTRAL	NA	783	Too-Many
TCGA.AG.4009.01A	1	145487252	145556558	41	0.0317	NEUTRAL	NA	7	"ANKRD35,ITGA10,LIX1L,NBPF10,NBPF20,PEX11B,RBM8A"
TCGA.AG.3909.01A	1	145498494	145535693	24	0.2579	NEUTRAL	NA	6	"ITGA10,LIX1L,NBPF10,NBPF20,PEX11B,RBM8A"
TCGA.AG.3906.01A	1	145507604	145646093	73	0.1366	NEUTRAL	NA	10	"ANKRD35,ITGA10,NBPF10,NBPF20,NUDT17,PEX11B,PIAS3,POLR3C,RBM8A,RNF115"
TCGA.AA.A01F.01A	1	145522476	149858496	155	-0.3441	NEUTRAL	NA	41	"ACP6,ANKRD35,BCL9,CD160,CHD1L,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,ITGA10,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NUDT17,PDZK1,PEX11B,PIAS3,POLR3C,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,RNF115"
TCGA.CK.5914.01A	1	145527886	145537117	15	0.3349	NEUTRAL	NA	3	"ITGA10,NBPF10,NBPF20"
TCGA.AA.A01I.01A	1	145530215	247202661	7578	-0.1357	NEUTRAL	NA	884	Too-Many
TCGA.A6.2685	1	145533174	249198691	34109	-0.0013	NEUTRAL	NA	936	Too-Many
TCGA.AG.A015.01A	1	145533405	147230239	137	0.3687	NEUTRAL	NA	19	"ACP6,ANKRD35,BCL9,CD160,CHD1L,FMO5,GJA5,GPR89A,ITGA10,NBPF10,NBPF11,NBPF12,NBPF20,NUDT17,PDZK1,PIAS3,POLR3C,PRKAB2,RNF115"
TCGA.AG.3909.01A	1	145536801	145556558	12	-0.2586	NEUTRAL	NA	4	"ANKRD35,ITGA10,NBPF10,NBPF20"
TCGA.CK.5914.01A	1	145537956	145560056	15	-0.3042	NEUTRAL	NA	4	"ANKRD35,ITGA10,NBPF10,NBPF20"
TCGA.AG.A02G.01A	1	145549235	149899040	166	0.2579	NEUTRAL	NA	44	"ACP6,ANKRD35,BCL9,BOLA1,CD160,CHD1L,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NUDT17,PDZK1,PIAS3,POLR3C,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,RNF115,SF3B4,SV2A"
TCGA.AY.6196	1	145551514	146636164	83	0.3566	NEUTRAL	NA	13	"ANKRD35,CD160,GPR89A,NBPF10,NBPF11,NBPF12,NBPF20,NUDT17,PDZK1,PIAS3,POLR3C,PRKAB2,RNF115"
TCGA.CA.6716	1	145554449	249198691	34071	0.2664	NEUTRAL	NA	935	Too-Many
TCGA.AA.A01Q.01A	1	145556558	145598510	33	-0.3556	NEUTRAL	NA	6	"ANKRD35,NBPF10,NBPF20,NUDT17,PIAS3,POLR3C"
TCGA.AG.4009.01A	1	145557001	145566629	7	-0.2747	NEUTRAL	NA	3	"ANKRD35,NBPF10,NBPF20"
TCGA.AF.3914.01A	1	145567659	145587298	13	-0.4846	NEUTRAL	NA	5	"ANKRD35,NBPF10,NBPF20,NUDT17,PIAS3"
TCGA.AF.3914.01A	1	145587693	150524708	272	0.1804	NEUTRAL	NA	57	"ACP6,ADAMTSL4,ANP32E,APH1A,BCL9,BOLA1,C1orf54,CA14,CD160,CHD1L,CIART,ECM1,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NUDT17,OTUD7B,PDZK1,PLEKHO1,POLR3C,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,RNF115,RPRD2,SF3B4,SV2A,TARS2,VPS45"
TCGA.AG.4009.01A	1	145589198	146633224	46	-0.2217	NEUTRAL	NA	11	"CD160,GPR89A,NBPF10,NBPF11,NBPF12,NBPF20,NUDT17,PDZK1,POLR3C,PRKAB2,RNF115"
TCGA.AA.A01Q.01A	1	145601488	151298551	459	0.0271	NEUTRAL	NA	84	"ACP6,ADAMTSL4,ANP32E,ANXA9,APH1A,ARNT,BCL9,BNIPL,BOLA1,C1orf54,C1orf56,CA14,CD160,CDC42SE1,CERS2,CHD1L,CIART,CTSK,CTSS,ECM1,ENSA,FAM63A,FCGR1A,FMO5,GABPB2,GJA5,GJA8,GOLPH3L,GPR89A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,HORMAD1,LYSMD1,MCL1,MLLT11,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,OTUD7B,PDZK1,PI4KB,PIP5K1A,PLEKHO1,POLR3C,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,PRUNE,PSMD4,RNF115,RPRD2,SCNM1,SEMA6C,SETDB1,SF3B4,SV2A,TARS2,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS45,VPS72,ZNF687"
TCGA.AG.3909.01A	1	145611192	145703995	12	-0.261	NEUTRAL	NA	4	"CD160,NBPF10,NBPF20,RNF115"
TCGA.CK.5914.01A	1	145611192	147230239	88	0.1207	NEUTRAL	NA	14	"ACP6,BCL9,CD160,CHD1L,FMO5,GJA5,GPR89A,NBPF10,NBPF11,NBPF12,NBPF20,PDZK1,PRKAB2,RNF115"
TCGA.AG.A025.01A	1	145686928	147090581	67	0.1976	NEUTRAL	NA	12	"BCL9,CD160,CHD1L,FMO5,GPR89A,NBPF10,NBPF11,NBPF12,NBPF20,PDZK1,PRKAB2,RNF115"
TCGA.AG.3906.01A	1	145696495	148594501	88	0.0279	NEUTRAL	NA	24	"ACP6,BCL9,CD160,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,PDZK1,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2"
TCGA.AA.A010.01A	1	145703995	146643517	26	0.2849	NEUTRAL	NA	8	"CD160,GPR89A,NBPF10,NBPF11,NBPF12,NBPF20,PDZK1,PRKAB2"
TCGA.AG.3909.01A	1	145706626	145804236	15	0.3019	NEUTRAL	NA	5	"CD160,GPR89A,NBPF10,NBPF20,PDZK1"
TCGA.AA.A00L.01A	1	145747017	146465996	20	0.1091	NEUTRAL	NA	6	"GPR89A,NBPF10,NBPF11,NBPF12,NBPF20,PDZK1"
TCGA.AA.A02K.01A	1	145761127	145811304	9	-0.1673	NEUTRAL	NA	4	"GPR89A,NBPF10,NBPF20,PDZK1"
TCGA.AG.A02X.01A	1	145762072	150444880	209	0.1291	NEUTRAL	NA	50	"ACP6,ANP32E,APH1A,BCL9,BOLA1,C1orf54,CA14,CHD1L,CIART,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,OTUD7B,PDZK1,PLEKHO1,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,RPRD2,SF3B4,SV2A,VPS45"
TCGA.AA.A00Q.01A	1	145763498	148009457	74	-0.3243	NEUTRAL	NA	17	"ACP6,BCL9,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,NBPF10,NBPF11,NBPF12,NBPF20,NBPF8,PDZK1,PPIAL4A,PPIAL4C,PRKAB2"
TCGA.AG.3909.01A	1	145811290	146465996	6	-0.199	NEUTRAL	NA	5	"GPR89A,NBPF10,NBPF11,NBPF12,NBPF20"
TCGA.AA.A02K.01A	1	145811847	147086199	52	0.2292	NEUTRAL	NA	9	"BCL9,CHD1L,FMO5,GPR89A,NBPF10,NBPF11,NBPF12,NBPF20,PRKAB2"
TCGA.AZ.4684.01A	1	145818719	147410781	64	0.3094	NEUTRAL	NA	13	"ACP6,BCL9,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,NBPF10,NBPF11,NBPF12,NBPF20,PRKAB2"
TCGA.AA.3930.01A	1	145826807	151554054	544	0.2361	NEUTRAL	NA	86	"ACP6,ADAMTSL4,ANP32E,ANXA9,APH1A,ARNT,BCL9,BNIPL,BOLA1,C1orf54,C1orf56,CA14,CDC42SE1,CERS2,CGN,CHD1L,CIART,CTSK,CTSS,ECM1,ENSA,FAM63A,FCGR1A,FMO5,GABPB2,GJA5,GJA8,GOLPH3L,GPR89A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,HORMAD1,LYSMD1,MCL1,MLLT11,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,OTUD7B,PI4KB,PIP5K1A,PLEKHO1,POGZ,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,PRUNE,PSMB4,PSMD4,RFX5,RPRD2,SCNM1,SELENBP1,SEMA6C,SETDB1,SF3B4,SV2A,TARS2,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS45,VPS72,ZNF687"
TCGA.AA.3941	1	146506861	147340733	299	0.2326	NEUTRAL	NA	6	"ACP6,BCL9,CHD1L,FMO5,GJA5,PRKAB2"
TCGA.AG.A01W.01A	1	146618637	148051423	24	0.2573	NEUTRAL	NA	12	"ACP6,BCL9,CHD1L,FMO5,GJA5,GJA8,GPR89B,NBPF11,NBPF8,PPIAL4A,PPIAL4C,PRKAB2"
TCGA.AY.6196	1	146641685	149229085	298	0.0686	NEUTRAL	NA	18	"ACP6,BCL9,CHD1L,FMO5,GJA5,GJA8,GPR89B,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2"
TCGA.AA.A010.01A	1	146656024	146767050	32	-0.438	NEUTRAL	NA	2	"CHD1L,FMO5"
TCGA.AG.4009.01A	1	146728099	149783446	55	-0.2975	NEUTRAL	NA	18	"ACP6,BCL9,CHD1L,FCGR1A,GJA5,GJA8,GPR89B,HIST2H2BF,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F"
TCGA.AG.3909.01A	1	146736064	147400594	36	0.0764	NEUTRAL	NA	6	"ACP6,BCL9,CHD1L,GJA5,GJA8,GPR89B"
TCGA.AA.A00N.01A	1	146740392	147400594	33	0.375	NEUTRAL	NA	6	"ACP6,BCL9,CHD1L,GJA5,GJA8,GPR89B"
TCGA.AG.A01L.01A	1	146766044	147131025	16	0.1448	NEUTRAL	NA	3	"ACP6,BCL9,CHD1L"
TCGA.AG.3883	1	146881885	147296532	161	-0.2684	NEUTRAL	NA	3	"ACP6,BCL9,GJA5"
TCGA.AA.A02K.01A	1	147087557	147131461	15	-0.1203	NEUTRAL	NA	2	"ACP6,BCL9"
TCGA.AG.A025.01A	1	147094064	150316868	141	-0.347	NEUTRAL	NA	41	"ACP6,ANP32E,APH1A,BCL9,BOLA1,C1orf54,CA14,CIART,FCGR1A,GJA5,GJA8,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MRPS21,MTMR11,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,OTUD7B,PLEKHO1,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRPF3,SF3B4,SV2A,VPS45"
TCGA.AA.A00L.01A	1	147119198	150082572	75	-0.1788	NEUTRAL	NA	32	"ACP6,BOLA1,FCGR1A,GJA5,GJA8,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MTMR11,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,OTUD7B,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SF3B4,SV2A,VPS45"
TCGA.AG.A01L.01A	1	147131469	149858496	28	-0.2523	NEUTRAL	NA	24	"ACP6,FCGR1A,GJA5,GJA8,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F"
TCGA.AA.A02K.01A	1	147141906	147415501	8	0.313	NEUTRAL	NA	4	"ACP6,GJA5,GJA8,GPR89B"
TCGA.AG.3883	1	147307066	161370984	3294	0.0397	NEUTRAL	NA	353	Too-Many
TCGA.AG.A015.01A	1	147380076	149897676	41	0.1206	NEUTRAL	NA	27	"BOLA1,FCGR1A,GJA8,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SF3B4,SV2A"
TCGA.CK.5914.01A	1	147380076	149904103	52	-0.3915	NEUTRAL	NA	28	"BOLA1,FCGR1A,GJA8,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MTMR11,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SF3B4,SV2A"
TCGA.AA.A00A.01A	1	147400594	150256776	89	-0.3577	NEUTRAL	NA	35	"ANP32E,APH1A,BOLA1,C1orf54,CA14,CIART,FCGR1A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MTMR11,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,OTUD7B,PLEKHO1,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SF3B4,SV2A,VPS45"
TCGA.AA.A02K.01A	1	147416060	148004607	4	-0.0911	NEUTRAL	NA	5	"GPR89B,NBPF11,NBPF8,PPIAL4A,PPIAL4C"
TCGA.A6.4107	1	147807963	249198691	33771	0.206	NEUTRAL	NA	915	Too-Many
TCGA.AZ.4684.01A	1	147955208	158326246	1838	0.0708	NEUTRAL	NA	269	Too-Many
TCGA.AG.A01W.01A	1	148124383	148167620	23	-0.2409	NEUTRAL	NA	1	NBPF8
TCGA.AG.A01W.01A	1	148168131	148209569	24	0.2712	NEUTRAL	NA	4	"NBPF8,PPIAL4D,PPIAL4E,PPIAL4F"
TCGA.AG.A01W.01A	1	148215931	148728013	83	-0.0465	NEUTRAL	NA	4	"NBPF14,NBPF15,NBPF8,NBPF9"
TCGA.AA.A02K.01A	1	148252013	155023073	1084	0.145	NEUTRAL	NA	185	Too-Many
TCGA.AG.A01W.01A	1	148743396	148817902	26	0.16	NEUTRAL	NA	3	"PPIAL4D,PPIAL4E,PPIAL4F"
TCGA.AG.A01W.01A	1	148887385	149056970	37	0.2253	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	149073600	149169027	10	0.0388	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	149178972	149357021	76	-0.3384	NEUTRAL	NA	0	None
TCGA.AA.3678	1	149229085	212178306	20371	0.318	NEUTRAL	NA	671	Too-Many
TCGA.AY.6196	1	149254919	181020587	10162	0.3716	NEUTRAL	NA	472	Too-Many
TCGA.AG.A01W.01A	1	149376759	149405182	13	0.2158	NEUTRAL	NA	0	None
TCGA.AG.3906.01A	1	149400145	149859092	15	-0.22	NEUTRAL	NA	14	"FCGR1A,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,PPIAL4A,PPIAL4C"
TCGA.AG.A01W.01A	1	149405509	149486869	33	-0.212	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	149493800	149525965	10	0.2271	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	149531904	149813322	79	-0.0407	NEUTRAL	NA	9	"FCGR1A,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,PPIAL4A,PPIAL4C"
TCGA.AA.3549	1	149771889	151945778	369	0.0904	NEUTRAL	NA	74	"ADAMTSL4,ANP32E,ANXA9,APH1A,ARNT,BNIPL,BOLA1,C1orf54,C1orf56,C2CD4D,CA14,CDC42SE1,CELF3,CERS2,CGN,CIART,CTSK,CTSS,ECM1,ENSA,FAM63A,GABPB2,GOLPH3L,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,HORMAD1,LINGO4,LYSMD1,MCL1,MLLT11,MRPL9,MRPS21,MTMR11,OAZ3,OTUD7B,PI4KB,PIP5K1A,PLEKHO1,POGZ,PRPF3,PRUNE,PSMB4,PSMD4,RFX5,RIIAD1,RORC,RPRD2,SCNM1,SELENBP1,SEMA6C,SETDB1,SF3B4,SNX27,SV2A,TARS2,TDRKH,THEM4,THEM5,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS45,VPS72,ZNF687"
TCGA.EI.7004	1	149771889	176210674	8769	0.0137	NEUTRAL	NA	443	Too-Many
TCGA.AZ.4614	1	149771889	246355667	32670	0.0769	NEUTRAL	NA	847	Too-Many
TCGA.AG.4022	1	149771889	249198691	33775	-0.0264	NEUTRAL	NA	905	Too-Many
TCGA.AG.4009.01A	1	149783776	150082572	60	0.1254	NEUTRAL	NA	17	"BOLA1,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MTMR11,OTUD7B,SF3B4,SV2A,VPS45"
TCGA.AA.A00N.01A	1	149784789	149904103	30	-0.4779	NEUTRAL	NA	14	"BOLA1,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MTMR11,SF3B4,SV2A"
TCGA.AG.A01W.01A	1	149813989	149922430	12	0.3531	NEUTRAL	NA	14	"BOLA1,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H3A,HIST2H3C,HIST2H4A,HIST2H4B,MTMR11,OTUD7B,SF3B4,SV2A"
TCGA.AG.3906.01A	1	149871575	149884780	12	0.1571	NEUTRAL	NA	2	"BOLA1,SV2A"
TCGA.A6.3808.01A	1	149871575	150300739	97	-0.067	NEUTRAL	NA	14	"ANP32E,APH1A,BOLA1,C1orf54,CA14,CIART,MRPS21,MTMR11,OTUD7B,PLEKHO1,PRPF3,SF3B4,SV2A,VPS45"
TCGA.AA.3712	1	149876123	249198691	33763	0.0786	NEUTRAL	NA	893	Too-Many
TCGA.AA.3861.01A	1	149878194	155207903	1135	0.1026	NEUTRAL	NA	175	Too-Many
TCGA.AG.3909.01A	1	149895392	149949306	31	0.0841	NEUTRAL	NA	3	"MTMR11,OTUD7B,SF3B4"
TCGA.AG.3906.01A	1	149895392	150082572	43	-0.1649	NEUTRAL	NA	4	"MTMR11,OTUD7B,SF3B4,VPS45"
TCGA.AA.A01F.01A	1	149897676	150483324	104	-0.4231	NEUTRAL	NA	15	"ANP32E,APH1A,C1orf54,CA14,CIART,ECM1,MRPS21,MTMR11,OTUD7B,PLEKHO1,PRPF3,RPRD2,SF3B4,TARS2,VPS45"
TCGA.AG.A016.01A	1	149897676	150483324	125	-0.2008	NEUTRAL	NA	15	"ANP32E,APH1A,C1orf54,CA14,CIART,ECM1,MRPS21,MTMR11,OTUD7B,PLEKHO1,PRPF3,RPRD2,SF3B4,TARS2,VPS45"
TCGA.AG.A015.01A	1	149898240	150460293	106	0.3766	NEUTRAL	NA	14	"ANP32E,APH1A,C1orf54,CA14,CIART,MRPS21,MTMR11,OTUD7B,PLEKHO1,PRPF3,RPRD2,SF3B4,TARS2,VPS45"
TCGA.AG.A01L.01A	1	149898240	151001220	252	-0.1789	NEUTRAL	NA	28	"ADAMTSL4,ANP32E,ANXA9,APH1A,ARNT,C1orf54,CA14,CERS2,CIART,CTSK,CTSS,ECM1,ENSA,FAM63A,GOLPH3L,HORMAD1,MCL1,MRPS21,MTMR11,OTUD7B,PLEKHO1,PRPF3,PRUNE,RPRD2,SETDB1,SF3B4,TARS2,VPS45"
TCGA.F5.6810	1	149898950	192887992	13951	0.2422	NEUTRAL	NA	499	Too-Many
TCGA.AG.A02G.01A	1	149903125	150922882	205	0.2717	NEUTRAL	NA	23	"ADAMTSL4,ANP32E,APH1A,ARNT,C1orf54,CA14,CIART,CTSK,CTSS,ECM1,ENSA,GOLPH3L,HORMAD1,MCL1,MRPS21,MTMR11,OTUD7B,PLEKHO1,PRPF3,RPRD2,SETDB1,TARS2,VPS45"
TCGA.AG.A01W.01A	1	149931524	150001131	22	-0.0341	NEUTRAL	NA	1	OTUD7B
TCGA.AG.3594	1	149989433	165680745	5150	0.023	NEUTRAL	NA	353	Too-Many
TCGA.AG.A01W.01A	1	150021963	150222223	27	-0.1062	NEUTRAL	NA	3	"ANP32E,PLEKHO1,VPS45"
TCGA.AA.A00N.01A	1	150039861	150082572	13	-0.4735	NEUTRAL	NA	1	VPS45
TCGA.AA.A00Q.01A	1	150039861	150312812	53	-0.486	NEUTRAL	NA	9	"ANP32E,APH1A,C1orf54,CA14,CIART,MRPS21,PLEKHO1,PRPF3,VPS45"
TCGA.AG.3909.01A	1	150039861	150337144	66	-0.3919	NEUTRAL	NA	10	"ANP32E,APH1A,C1orf54,CA14,CIART,MRPS21,PLEKHO1,PRPF3,RPRD2,VPS45"
TCGA.AG.3906.01A	1	150192948	150485675	81	0.1982	NEUTRAL	NA	10	"ANP32E,APH1A,C1orf54,CA14,CIART,ECM1,MRPS21,PRPF3,RPRD2,TARS2"
TCGA.AG.4009.01A	1	150192948	150485675	80	0.2373	NEUTRAL	NA	10	"ANP32E,APH1A,C1orf54,CA14,CIART,ECM1,MRPS21,PRPF3,RPRD2,TARS2"
TCGA.AG.A01W.01A	1	150225169	150396825	20	0.3387	NEUTRAL	NA	7	"APH1A,C1orf54,CA14,CIART,MRPS21,PRPF3,RPRD2"
TCGA.AA.A00N.01A	1	150230455	150681304	112	-0.0313	NEUTRAL	NA	14	"ADAMTSL4,APH1A,C1orf54,CA14,CIART,ECM1,ENSA,GOLPH3L,HORMAD1,MCL1,MRPS21,PRPF3,RPRD2,TARS2"
TCGA.AA.A00L.01A	1	150232480	150258815	16	-0.1759	NEUTRAL	NA	4	"APH1A,C1orf54,CA14,CIART"
TCGA.AA.A004.01A	1	150238891	155903396	1131	-0.3704	NEUTRAL	NA	183	Too-Many
TCGA.AA.3980.01A	1	150241056	152130217	473	0.2118	NEUTRAL	NA	59	"ADAMTSL4,ANXA9,APH1A,ARNT,BNIPL,C1orf54,C1orf56,C2CD4D,CDC42SE1,CELF3,CERS2,CGN,CIART,CTSK,CTSS,ECM1,ENSA,FAM63A,GABPB2,GOLPH3L,HORMAD1,LINGO4,LYSMD1,MCL1,MLLT11,MRPL9,MRPS21,OAZ3,PI4KB,PIP5K1A,POGZ,PRPF3,PRUNE,PSMB4,PSMD4,RFX5,RIIAD1,RORC,RPRD2,RPTN,S100A10,S100A11,SCNM1,SELENBP1,SEMA6C,SETDB1,SNX27,TARS2,TCHH,TCHHL1,TDRKH,THEM4,THEM5,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AA.A00A.01A	1	150258815	150461422	24	-0.0062	NEUTRAL	NA	5	"CIART,MRPS21,PRPF3,RPRD2,TARS2"
TCGA.AA.A00L.01A	1	150266739	150461422	23	0.1853	NEUTRAL	NA	4	"MRPS21,PRPF3,RPRD2,TARS2"
TCGA.CK.5914.01A	1	150305110	150483894	45	0.0574	NEUTRAL	NA	4	"ECM1,PRPF3,RPRD2,TARS2"
TCGA.AA.A00Q.01A	1	150315753	150460293	13	0.1996	NEUTRAL	NA	3	"PRPF3,RPRD2,TARS2"
TCGA.AG.A025.01A	1	150325260	150459861	15	-0.1064	NEUTRAL	NA	3	"PRPF3,RPRD2,TARS2"
TCGA.A6.3808.01A	1	150337144	150469264	21	-0.2664	NEUTRAL	NA	2	"RPRD2,TARS2"
TCGA.AG.3909.01A	1	150390035	150684221	70	-0.0383	NEUTRAL	NA	8	"ADAMTSL4,ECM1,ENSA,GOLPH3L,HORMAD1,MCL1,RPRD2,TARS2"
TCGA.AG.A015.01A	1	150461422	150471325	9	0.1345	NEUTRAL	NA	1	TARS2
TCGA.AA.A00Q.01A	1	150461422	151015383	153	-0.3426	NEUTRAL	NA	16	"ADAMTSL4,ANXA9,ARNT,BNIPL,CERS2,CTSK,CTSS,ECM1,ENSA,FAM63A,GOLPH3L,HORMAD1,MCL1,PRUNE,SETDB1,TARS2"
TCGA.AA.A00A.01A	1	150463035	150599766	40	-0.4359	NEUTRAL	NA	5	"ADAMTSL4,ECM1,ENSA,MCL1,TARS2"
TCGA.AA.A00L.01A	1	150463035	151682155	341	-0.2896	NEUTRAL	NA	39	"ADAMTSL4,ANXA9,ARNT,BNIPL,C1orf56,CDC42SE1,CELF3,CERS2,CGN,CTSK,CTSS,ECM1,ENSA,FAM63A,GABPB2,GOLPH3L,HORMAD1,LYSMD1,MCL1,MLLT11,PI4KB,PIP5K1A,POGZ,PRUNE,PSMB4,PSMD4,RFX5,SCNM1,SELENBP1,SEMA6C,SETDB1,SNX27,TARS2,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AG.A02X.01A	1	150463035	153701060	555	0.1172	NEUTRAL	NA	115	Too-Many
TCGA.AG.A025.01A	1	150476759	150691899	48	-0.0473	NEUTRAL	NA	7	"ADAMTSL4,ECM1,ENSA,GOLPH3L,HORMAD1,MCL1,TARS2"
TCGA.AG.A01Y	1	150480570	150536348	5	-0.0257	NEUTRAL	NA	2	"ADAMTSL4,ECM1"
TCGA.AA.A01F.01A	1	150483894	150532504	17	0.035	NEUTRAL	NA	2	"ADAMTSL4,ECM1"
TCGA.AG.A016.01A	1	150483894	150532504	16	0.3399	NEUTRAL	NA	2	"ADAMTSL4,ECM1"
TCGA.CK.5914.01A	1	150484836	150550708	20	-0.4438	NEUTRAL	NA	3	"ADAMTSL4,ECM1,MCL1"
TCGA.AG.3906.01A	1	150531399	150684221	24	0.1275	NEUTRAL	NA	5	"ADAMTSL4,ENSA,GOLPH3L,HORMAD1,MCL1"
TCGA.AG.A015.01A	1	150549803	150790364	47	0.3031	NEUTRAL	NA	7	"ARNT,CTSK,CTSS,ENSA,GOLPH3L,HORMAD1,MCL1"
TCGA.AG.A016.01A	1	150549803	150790364	46	-0.2042	NEUTRAL	NA	7	"ARNT,CTSK,CTSS,ENSA,GOLPH3L,HORMAD1,MCL1"
TCGA.AA.A01F.01A	1	150549803	151090415	135	-0.3789	NEUTRAL	NA	17	"ANXA9,ARNT,BNIPL,C1orf56,CDC42SE1,CERS2,CTSK,CTSS,ENSA,FAM63A,GABPB2,GOLPH3L,HORMAD1,MCL1,MLLT11,PRUNE,SETDB1"
TCGA.AG.A01W.01A	1	150551151	150554390	5	0.2104	NEUTRAL	NA	1	MCL1
TCGA.AG.4009.01A	1	150551277	150671124	11	0.0293	NEUTRAL	NA	4	"ENSA,GOLPH3L,HORMAD1,MCL1"
TCGA.CK.5914.01A	1	150551277	150681304	19	0.3203	NEUTRAL	NA	4	"ENSA,GOLPH3L,HORMAD1,MCL1"
TCGA.AG.A01W.01A	1	150597801	151922803	117	0.1468	NEUTRAL	NA	44	"ANXA9,ARNT,BNIPL,C1orf56,C2CD4D,CDC42SE1,CELF3,CERS2,CGN,CTSK,CTSS,ENSA,FAM63A,GABPB2,GOLPH3L,HORMAD1,LINGO4,LYSMD1,MLLT11,MRPL9,OAZ3,PI4KB,PIP5K1A,POGZ,PRUNE,PSMB4,PSMD4,RFX5,RIIAD1,RORC,SCNM1,SELENBP1,SEMA6C,SETDB1,SNX27,TDRKH,THEM4,THEM5,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AF.3914.01A	1	150598077	150923794	71	0.1157	NEUTRAL	NA	7	"ARNT,CTSK,CTSS,ENSA,GOLPH3L,HORMAD1,SETDB1"
TCGA.BM.6198	1	150630868	150671397	9	-0.33475	NEUTRAL	NA	2	"GOLPH3L,HORMAD1"
TCGA.AG.A01Y	1	150630868	212227286	20200	0.0051	NEUTRAL	NA	638	Too-Many
TCGA.AG.4009.01A	1	150672524	150806975	40	-0.431	NEUTRAL	NA	4	"ARNT,CTSK,CTSS,HORMAD1"
TCGA.AA.A00D.01A	1	150680695	150769236	16	-0.0064	NEUTRAL	NA	3	"CTSK,CTSS,HORMAD1"
TCGA.AA.A00A.01A	1	150680695	156100399	1023	-0.3304	NEUTRAL	NA	179	Too-Many
TCGA.A6.3808.01A	1	150705475	151028101	107	-0.0085	NEUTRAL	NA	11	"ANXA9,ARNT,BNIPL,C1orf56,CDC42SE1,CERS2,CTSK,CTSS,FAM63A,PRUNE,SETDB1"
TCGA.AG.3906.01A	1	150720204	150806975	28	-0.0419	NEUTRAL	NA	3	"ARNT,CTSK,CTSS"
TCGA.AA.A010.01A	1	150724209	150795632	20	-0.0433	NEUTRAL	NA	3	"ARNT,CTSK,CTSS"
TCGA.AG.A025.01A	1	150769236	150789777	14	0.0776	NEUTRAL	NA	2	"ARNT,CTSK"
TCGA.AG.3909.01A	1	150769236	150795632	16	0.1018	NEUTRAL	NA	2	"ARNT,CTSK"
TCGA.AA.A00N.01A	1	150769236	150808719	23	0.2772	NEUTRAL	NA	2	"ARNT,CTSK"
TCGA.AA.3660	1	150770988	249198691	33629	0.3546	NEUTRAL	NA	871	Too-Many
TCGA.CK.5914.01A	1	150771972	150808719	21	0.2087	NEUTRAL	NA	2	"ARNT,CTSK"
TCGA.AA.A00F.01A	1	150771972	150811865	21	-0.0068	NEUTRAL	NA	2	"ARNT,CTSK"
TCGA.AG.3891.01A	1	150771972	150811865	22	0.0354	NEUTRAL	NA	2	"ARNT,CTSK"
TCGA.AG.A016.01A	1	150795632	150804754	6	0.3179	NEUTRAL	NA	1	ARNT
TCGA.AG.3909.01A	1	150798980	150814851	9	-0.2212	NEUTRAL	NA	1	ARNT
TCGA.AA.A00D.01A	1	150798980	151143348	112	-0.1868	NEUTRAL	NA	17	"ANXA9,ARNT,BNIPL,C1orf56,CDC42SE1,CERS2,FAM63A,GABPB2,LYSMD1,MLLT11,PRUNE,SCNM1,SEMA6C,SETDB1,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1"
TCGA.AG.A025.01A	1	150806975	150922882	20	-0.1842	NEUTRAL	NA	2	"ARNT,SETDB1"
TCGA.AG.A015.01A	1	150806975	151090415	84	0.2354	NEUTRAL	NA	11	"ANXA9,ARNT,BNIPL,C1orf56,CDC42SE1,CERS2,FAM63A,GABPB2,MLLT11,PRUNE,SETDB1"
TCGA.AG.A016.01A	1	150806975	151090415	85	-0.3234	NEUTRAL	NA	11	"ANXA9,ARNT,BNIPL,C1orf56,CDC42SE1,CERS2,FAM63A,GABPB2,MLLT11,PRUNE,SETDB1"
TCGA.AF.4110	1	150811004	156836837	1413	0.2263	NEUTRAL	NA	207	Too-Many
TCGA.AA.A00N.01A	1	150848931	150923794	16	0.1198	NEUTRAL	NA	2	"ARNT,SETDB1"
TCGA.AA.A00F.01A	1	150848931	153617526	412	0.0447	NEUTRAL	NA	102	Too-Many
TCGA.A6.6138	1	150879100	249198691	33624	-0.1155	NEUTRAL	NA	869	Too-Many
TCGA.AG.4009.01A	1	150899182	150923794	15	-0.0428	NEUTRAL	NA	1	SETDB1
TCGA.AG.3909.01A	1	150899182	150960313	35	-0.0029	NEUTRAL	NA	3	"ANXA9,CERS2,SETDB1"
TCGA.CK.5914.01A	1	150912347	150923794	12	0.1106	NEUTRAL	NA	1	SETDB1
TCGA.AG.A02G.01A	1	150923183	151214568	114	-0.0904	NEUTRAL	NA	18	"ANXA9,BNIPL,C1orf56,CDC42SE1,CERS2,FAM63A,GABPB2,LYSMD1,MLLT11,PIP5K1A,PRUNE,SCNM1,SEMA6C,SETDB1,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS72"
TCGA.AG.4009.01A	1	150931606	150958755	19	-0.4781	NEUTRAL	NA	3	"ANXA9,CERS2,SETDB1"
TCGA.AF.3914.01A	1	150931606	150960543	21	-0.3157	NEUTRAL	NA	3	"ANXA9,CERS2,SETDB1"
TCGA.AG.4009.01A	1	150960313	151039664	35	0.2478	NEUTRAL	NA	7	"ANXA9,BNIPL,C1orf56,CDC42SE1,FAM63A,MLLT11,PRUNE"
TCGA.AG.3909.01A	1	150960543	151015383	24	-0.5046	NEUTRAL	NA	4	"ANXA9,BNIPL,FAM63A,PRUNE"
TCGA.AF.3914.01A	1	150967005	151104969	44	0.1733	NEUTRAL	NA	9	"ANXA9,BNIPL,C1orf56,CDC42SE1,FAM63A,GABPB2,MLLT11,PRUNE,SEMA6C"
TCGA.AG.3906.01A	1	150967671	151079466	38	0.3443	NEUTRAL	NA	8	"ANXA9,BNIPL,C1orf56,CDC42SE1,FAM63A,GABPB2,MLLT11,PRUNE"
TCGA.AA.A010.01A	1	150978503	151015383	14	0.3282	NEUTRAL	NA	3	"BNIPL,FAM63A,PRUNE"
TCGA.AG.A025.01A	1	150981032	151804123	231	-0.2451	NEUTRAL	NA	31	"BNIPL,C1orf56,CDC42SE1,CELF3,CGN,GABPB2,LINGO4,LYSMD1,MLLT11,MRPL9,OAZ3,PI4KB,PIP5K1A,POGZ,PRUNE,PSMB4,PSMD4,RFX5,RIIAD1,RORC,SCNM1,SELENBP1,SEMA6C,SNX27,TDRKH,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AG.A01L.01A	1	151006305	151062865	18	-0.4914	NEUTRAL	NA	6	"BNIPL,C1orf56,CDC42SE1,GABPB2,MLLT11,PRUNE"
TCGA.AG.A00C.01A	1	151039664	151131123	23	0.3365	NEUTRAL	NA	5	"GABPB2,MLLT11,SEMA6C,TNFAIP8L2,TNFAIP8L2-SCNM1"
TCGA.AA.A010.01A	1	151060624	151079466	6	-0.501	NEUTRAL	NA	1	GABPB2
TCGA.AG.4009.01A	1	151060624	151104969	9	-0.068	NEUTRAL	NA	2	"GABPB2,SEMA6C"
TCGA.AA.A00Q.01A	1	151060624	151490944	129	-0.4148	NEUTRAL	NA	17	"CGN,GABPB2,LYSMD1,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,SCNM1,SELENBP1,SEMA6C,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS72,ZNF687"
TCGA.AG.A01L.01A	1	151065617	151090415	6	-0.1361	NEUTRAL	NA	1	GABPB2
TCGA.AA.A01F.01A	1	151104969	151110415	9	0.1787	NEUTRAL	NA	1	SEMA6C
TCGA.AG.A01L.01A	1	151106818	151112412	12	0.2165	NEUTRAL	NA	1	SEMA6C
TCGA.AG.3909.01A	1	151106818	151157950	35	-0.1711	NEUTRAL	NA	7	"LYSMD1,SCNM1,SEMA6C,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS72"
TCGA.AG.A015.01A	1	151110415	151259894	55	0.3581	NEUTRAL	NA	10	"LYSMD1,PIP5K1A,PSMD4,SCNM1,SEMA6C,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS72,ZNF687"
TCGA.AF.3914.01A	1	151110415	151345039	91	0.1932	NEUTRAL	NA	13	"LYSMD1,PI4KB,PIP5K1A,PSMD4,RFX5,SCNM1,SELENBP1,SEMA6C,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS72,ZNF687"
TCGA.AG.A016.01A	1	151110415	152276009	231	-0.2214	NEUTRAL	NA	35	"C2CD4D,CELF3,CGN,FLG,HRNR,LINGO4,LYSMD1,MRPL9,OAZ3,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,RIIAD1,RORC,RPTN,S100A10,S100A11,SCNM1,SELENBP1,SEMA6C,SNX27,TCHH,TCHHL1,TDRKH,THEM4,THEM5,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AA.A01F.01A	1	151110758	151958567	197	-0.392	NEUTRAL	NA	29	"C2CD4D,CELF3,CGN,LINGO4,LYSMD1,MRPL9,OAZ3,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,RIIAD1,RORC,S100A10,SCNM1,SELENBP1,SEMA6C,SNX27,TDRKH,THEM4,THEM5,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AG.3891.01A	1	151114938	151140579	9	0.2422	NEUTRAL	NA	5	"LYSMD1,SCNM1,SEMA6C,TNFAIP8L2,TNFAIP8L2-SCNM1"
TCGA.AG.4009.01A	1	151114938	151384745	97	0.2228	NEUTRAL	NA	15	"LYSMD1,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,SCNM1,SELENBP1,SEMA6C,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS72,ZNF687"
TCGA.AG.A01L.01A	1	151114938	151735428	157	-0.2051	NEUTRAL	NA	21	"CELF3,CGN,LYSMD1,MRPL9,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,RIIAD1,SCNM1,SELENBP1,SEMA6C,SNX27,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AG.3906.01A	1	151131123	151688315	153	0.1356	NEUTRAL	NA	18	"CELF3,CGN,LYSMD1,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,SCNM1,SELENBP1,SNX27,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.A6.3808.01A	1	151131123	152130217	238	0.1096	NEUTRAL	NA	32	"C2CD4D,CELF3,CGN,LINGO4,LYSMD1,MRPL9,OAZ3,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,RIIAD1,RORC,RPTN,S100A10,S100A11,SCNM1,SELENBP1,SNX27,TCHH,TCHHL1,TDRKH,THEM4,THEM5,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AG.A00C.01A	1	151133319	151682155	150	0.0323	NEUTRAL	NA	17	"CELF3,CGN,LYSMD1,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,SCNM1,SELENBP1,SNX27,TMOD4,TNFAIP8L2-SCNM1,TUFT1,VPS72,ZNF687"
TCGA.AA.A00N.01A	1	151137524	151318319	77	0.092	NEUTRAL	NA	10	"LYSMD1,PI4KB,PIP5K1A,PSMD4,RFX5,SCNM1,TMOD4,TNFAIP8L2-SCNM1,VPS72,ZNF687"
TCGA.AA.A010.01A	1	151142472	151157950	13	0.1738	NEUTRAL	NA	4	"SCNM1,TMOD4,TNFAIP8L2-SCNM1,VPS72"
TCGA.AG.3891.01A	1	151145938	151171429	10	0.1593	NEUTRAL	NA	3	"PIP5K1A,TMOD4,VPS72"
TCGA.AG.3909.01A	1	151210601	151227182	8	-0.0619	NEUTRAL	NA	1	PIP5K1A
TCGA.CK.5914.01A	1	151214897	151693976	130	-0.1156	NEUTRAL	NA	12	"CELF3,CGN,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,SELENBP1,SNX27,TUFT1,ZNF687"
TCGA.AG.3891.01A	1	151219317	152005087	166	0.1942	NEUTRAL	NA	23	"C2CD4D,CELF3,CGN,LINGO4,MRPL9,OAZ3,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,RIIAD1,RORC,S100A10,S100A11,SELENBP1,SNX27,TDRKH,THEM4,THEM5,TUFT1,ZNF687"
TCGA.AA.A00D.01A	1	151234590	152190805	164	-0.3306	NEUTRAL	NA	26	"C2CD4D,CELF3,CGN,HRNR,LINGO4,MRPL9,OAZ3,PI4KB,POGZ,PSMB4,PSMD4,RFX5,RIIAD1,RORC,RPTN,S100A10,S100A11,SELENBP1,SNX27,TCHH,TCHHL1,TDRKH,THEM4,THEM5,TUFT1,ZNF687"
TCGA.AG.A015.01A	1	151266442	152128743	157	0.3625	NEUTRAL	NA	23	"C2CD4D,CELF3,CGN,LINGO4,MRPL9,OAZ3,PI4KB,POGZ,PSMB4,RFX5,RIIAD1,RORC,RPTN,S100A10,S100A11,SELENBP1,SNX27,TCHH,TCHHL1,TDRKH,THEM4,THEM5,TUFT1"
TCGA.AG.3909.01A	1	151314458	151318631	7	0.1196	NEUTRAL	NA	1	RFX5
TCGA.AG.3909.01A	1	151372490	151414509	21	0.2521	NEUTRAL	NA	2	"POGZ,PSMB4"
TCGA.AA.A00N.01A	1	151372906	151584626	52	0.291	NEUTRAL	NA	4	"CGN,POGZ,PSMB4,TUFT1"
TCGA.AA.A010.01A	1	151379639	151384745	6	0.1804	NEUTRAL	NA	1	POGZ
TCGA.AF.3914.01A	1	151384745	151735752	68	0.1612	NEUTRAL	NA	8	"CELF3,CGN,MRPL9,OAZ3,POGZ,RIIAD1,SNX27,TUFT1"
TCGA.AG.4009.01A	1	151395831	151497099	13	-0.1773	NEUTRAL	NA	2	"CGN,POGZ"
TCGA.AG.3909.01A	1	151490944	151499404	7	-0.4869	NEUTRAL	NA	1	CGN
TCGA.AA.A01Q.01A	1	151490944	151518243	19	-0.0067	NEUTRAL	NA	2	"CGN,TUFT1"
TCGA.AA.A00Q.01A	1	151492625	151655790	38	-0.1076	NEUTRAL	NA	3	"CGN,SNX27,TUFT1"
TCGA.AG.4009.01A	1	151498066	151512786	13	0.1263	NEUTRAL	NA	2	"CGN,TUFT1"
TCGA.AG.3909.01A	1	151501814	151554054	23	0.2145	NEUTRAL	NA	2	"CGN,TUFT1"
TCGA.AG.4009.01A	1	151518243	151664899	21	-0.3071	NEUTRAL	NA	2	"SNX27,TUFT1"
TCGA.AA.3930.01A	1	151584626	151640901	7	-0.1687	NEUTRAL	NA	1	SNX27
TCGA.AA.A01Q.01A	1	151630664	151638362	4	-0.0553	NEUTRAL	NA	1	SNX27
TCGA.AA.A01Q.01A	1	151640901	151677469	6	0.3683	NEUTRAL	NA	2	"CELF3,SNX27"
TCGA.AA.3930.01A	1	151655790	152185515	86	0.2286	NEUTRAL	NA	17	"C2CD4D,CELF3,HRNR,LINGO4,MRPL9,OAZ3,RIIAD1,RORC,RPTN,S100A10,S100A11,SNX27,TCHH,TCHHL1,TDRKH,THEM4,THEM5"
TCGA.AA.A00Q.01A	1	151664899	152060435	53	-0.4946	NEUTRAL	NA	14	"C2CD4D,CELF3,LINGO4,MRPL9,OAZ3,RIIAD1,RORC,S100A10,S100A11,SNX27,TCHHL1,TDRKH,THEM4,THEM5"
TCGA.AG.4009.01A	1	151665345	151688315	12	0.1017	NEUTRAL	NA	2	"CELF3,SNX27"
TCGA.AA.A01Q.01A	1	151678261	151774691	21	-0.0534	NEUTRAL	NA	6	"CELF3,LINGO4,MRPL9,OAZ3,RIIAD1,TDRKH"
TCGA.AG.A01L.01A	1	151735752	151752377	15	0.109	NEUTRAL	NA	3	"MRPL9,OAZ3,TDRKH"
TCGA.AG.A02G.01A	1	151739171	152060435	46	-0.1007	NEUTRAL	NA	10	"C2CD4D,LINGO4,OAZ3,RORC,S100A10,S100A11,TCHHL1,TDRKH,THEM4,THEM5"
TCGA.AF.3914.01A	1	151748240	151849428	28	-0.2218	NEUTRAL	NA	6	"C2CD4D,LINGO4,RORC,TDRKH,THEM4,THEM5"
TCGA.AG.3906.01A	1	151748552	151958567	32	0.3201	NEUTRAL	NA	7	"C2CD4D,LINGO4,RORC,S100A10,TDRKH,THEM4,THEM5"
TCGA.AA.A00L.01A	1	151751174	152190805	41	-0.1979	NEUTRAL	NA	12	"C2CD4D,HRNR,LINGO4,RORC,RPTN,S100A10,S100A11,TCHH,TCHHL1,TDRKH,THEM4,THEM5"
TCGA.AG.A01L.01A	1	151753907	152130217	41	-0.2358	NEUTRAL	NA	11	"C2CD4D,LINGO4,RORC,RPTN,S100A10,S100A11,TCHH,TCHHL1,TDRKH,THEM4,THEM5"
TCGA.AA.A00N.01A	1	151773349	151860712	24	-0.2626	NEUTRAL	NA	5	"C2CD4D,LINGO4,RORC,THEM4,THEM5"
TCGA.AG.3909.01A	1	151773349	151861643	23	0.0511	NEUTRAL	NA	5	"C2CD4D,LINGO4,RORC,THEM4,THEM5"
TCGA.AG.4009.01A	1	151773349	152086368	35	-0.0737	NEUTRAL	NA	9	"C2CD4D,LINGO4,RORC,S100A10,S100A11,TCHH,TCHHL1,THEM4,THEM5"
TCGA.AG.A00C.01A	1	151773349	152185515	40	0.169	NEUTRAL	NA	11	"C2CD4D,HRNR,LINGO4,RORC,RPTN,S100A10,S100A11,TCHH,TCHHL1,THEM4,THEM5"
TCGA.CK.5914.01A	1	151787020	151824706	14	-0.2823	NEUTRAL	NA	3	"C2CD4D,RORC,THEM5"
TCGA.AA.A01Q.01A	1	151811165	152275158	30	0.1088	NEUTRAL	NA	10	"C2CD4D,FLG,HRNR,RPTN,S100A10,S100A11,TCHH,TCHHL1,THEM4,THEM5"
TCGA.AG.A025.01A	1	151823502	152130217	23	-0.4662	NEUTRAL	NA	7	"RPTN,S100A10,S100A11,TCHH,TCHHL1,THEM4,THEM5"
TCGA.AF.3914.01A	1	151860712	153410615	117	0.3773	NEUTRAL	NA	53	"C1orf68,CRCT1,CRNN,FLG,FLG2,HRNR,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,RPTN,S100A10,S100A11,S100A12,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4,TCHH,TCHHL1,THEM4"
TCGA.CK.5914.01A	1	151867444	152275158	26	-0.3551	NEUTRAL	NA	8	"FLG,HRNR,RPTN,S100A10,S100A11,TCHH,TCHHL1,THEM4"
TCGA.AG.A01W.01A	1	151929337	151996626	13	-0.0128	NEUTRAL	NA	1	S100A10
TCGA.AA.A010.01A	1	151955622	152275158	24	0.1485	NEUTRAL	NA	7	"FLG,HRNR,RPTN,S100A10,S100A11,TCHH,TCHHL1"
TCGA.AG.A01W.01A	1	151998569	152011995	18	0.3351	NEUTRAL	NA	1	S100A11
TCGA.AG.3906.01A	1	152005087	152130217	13	-0.1992	NEUTRAL	NA	4	"RPTN,S100A11,TCHH,TCHHL1"
TCGA.AA.A01F.01A	1	152005087	152190805	12	0.0651	NEUTRAL	NA	5	"HRNR,RPTN,S100A11,TCHH,TCHHL1"
TCGA.AG.3891.01A	1	152006074	152084774	7	-0.2611	NEUTRAL	NA	3	"S100A11,TCHH,TCHHL1"
TCGA.AG.A01W.01A	1	152014430	152173813	25	-0.0368	NEUTRAL	NA	3	"RPTN,TCHH,TCHHL1"
TCGA.AA.3941	1	152059579	153319052	507	0.0558	NEUTRAL	NA	45	"C1orf68,CRCT1,CRNN,FLG,FLG2,HRNR,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,RPTN,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4,TCHH,TCHHL1"
TCGA.AA.A01C.01A	1	152079829	152130217	8	-0.0473	NEUTRAL	NA	2	"RPTN,TCHH"
TCGA.AA.A00Q.01A	1	152079829	152187972	7	0.3202	NEUTRAL	NA	3	"HRNR,RPTN,TCHH"
TCGA.AG.3891.01A	1	152086368	152185515	6	0.1876	NEUTRAL	NA	3	"HRNR,RPTN,TCHH"
TCGA.AA.3967.01A	1	152130217	152285257	24	-0.4048	NEUTRAL	NA	3	"FLG,HRNR,RPTN"
TCGA.AG.A01W.01A	1	152175111	152214865	33	0.3704	NEUTRAL	NA	1	HRNR
TCGA.AA.A00N.01A	1	152185515	152195545	7	0.1145	NEUTRAL	NA	1	HRNR
TCGA.AA.3980.01A	1	152185515	152287748	25	-0.2054	NEUTRAL	NA	2	"FLG,HRNR"
TCGA.AG.A01L.01A	1	152185515	152328362	30	0.3487	NEUTRAL	NA	3	"FLG,FLG2,HRNR"
TCGA.AG.A00Y.01A	1	152185515	153303206	81	-0.1655	NEUTRAL	NA	42	"C1orf68,CRCT1,CRNN,FLG,FLG2,HRNR,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.3939.01A	1	152186575	152285257	22	-0.2672	NEUTRAL	NA	2	"FLG,HRNR"
TCGA.AA.3930.01A	1	152186575	152285847	23	-0.5138	NEUTRAL	NA	2	"FLG,HRNR"
TCGA.AG.A00C.01A	1	152186575	153317688	87	-0.3563	NEUTRAL	NA	42	"C1orf68,CRCT1,CRNN,FLG,FLG2,HRNR,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.A014.01A	1	152186575	153410615	98	-0.4058	NEUTRAL	NA	47	"C1orf68,CRCT1,CRNN,FLG,FLG2,HRNR,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,S100A12,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.4009.01A	1	152190805	152487869	31	-0.2033	NEUTRAL	NA	6	"CRCT1,CRNN,FLG,FLG2,HRNR,LCE5A"
TCGA.AA.A00Q.01A	1	152190805	158259785	1097	-0.471	NEUTRAL	NA	178	Too-Many
TCGA.AA.A01F.01A	1	152193405	152328362	25	0.3629	NEUTRAL	NA	3	"FLG,FLG2,HRNR"
TCGA.A6.3808.01A	1	152193405	153004780	59	-0.3343	NEUTRAL	NA	31	"C1orf68,CRCT1,CRNN,FLG,FLG2,HRNR,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,SMCP,SPRR1A,SPRR1B,SPRR3,SPRR4"
TCGA.AG.A01W.01A	1	152215768	152398023	51	0.0424	NEUTRAL	NA	3	"CRNN,FLG,FLG2"
TCGA.AG.3909.01A	1	152275158	152882596	53	0.2169	NEUTRAL	NA	26	"C1orf68,CRCT1,CRNN,FLG,FLG2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,SMCP"
TCGA.AG.A016.01A	1	152276511	152285257	14	0.0917	NEUTRAL	NA	1	FLG
TCGA.AA.A017.01A	1	152283792	152287748	6	-0.1168	NEUTRAL	NA	1	FLG
TCGA.AG.A015.01A	1	152284826	153657393	129	0.3335	NEUTRAL	NA	60	"C1orf68,CHTOP,CRCT1,CRNN,FLG,FLG2,ILF2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,NPR1,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.3891.01A	1	152285257	153314072	61	-0.235	NEUTRAL	NA	41	"C1orf68,CRCT1,CRNN,FLG,FLG2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.A010.01A	1	152285847	152384542	10	0.0752	NEUTRAL	NA	3	"CRNN,FLG,FLG2"
TCGA.AG.A016.01A	1	152285847	152648525	18	-0.2504	NEUTRAL	NA	12	"CRCT1,CRNN,FLG,FLG2,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE5A"
TCGA.AG.3906.01A	1	152285847	153312819	60	-0.3016	NEUTRAL	NA	41	"C1orf68,CRCT1,CRNN,FLG,FLG2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.3939.01A	1	152285847	153653604	127	0.2783	NEUTRAL	NA	60	"C1orf68,CHTOP,CRCT1,CRNN,FLG,FLG2,ILF2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,NPR1,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.3967.01A	1	152285847	153800442	181	0.2622	NEUTRAL	NA	63	"C1orf68,CHTOP,CRCT1,CRNN,FLG,FLG2,GATAD2B,ILF2,INTS3,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,NPR1,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SLC27A3,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.3930.01A	1	152287748	153588230	94	0.0108	NEUTRAL	NA	54	"C1orf68,CRCT1,CRNN,FLG,FLG2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,S100A12,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.3980.01A	1	152323059	167893659	2107	0.1803	NEUTRAL	NA	304	Too-Many
TCGA.AA.A00K.01A	1	152323059	249210793	6337	-0.411	NEUTRAL	NA	825	Too-Many
TCGA.AA.A02E.01A	1	152331176	153276326	48	0.3456	NEUTRAL	NA	39	"C1orf68,CRCT1,CRNN,FLG2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PRR9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.A01F.01A	1	152331176	153656157	118	-0.0203	NEUTRAL	NA	59	"C1orf68,CHTOP,CRCT1,CRNN,FLG2,ILF2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,NPR1,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.A01L.01A	1	152331176	153656157	118	-0.15	NEUTRAL	NA	59	"C1orf68,CHTOP,CRCT1,CRNN,FLG2,ILF2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,NPR1,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.A017.01A	1	152384542	153907196	174	-0.1941	NEUTRAL	NA	62	"C1orf68,CHTOP,CRCT1,CRNN,DENND4B,GATAD2B,ILF2,INTS3,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,NPR1,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SLC27A3,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.A01W.01A	1	152406942	152432705	12	-0.3987	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	152438479	152500671	32	0.1215	NEUTRAL	NA	2	"CRCT1,LCE5A"
TCGA.CK.5914.01A	1	152484019	152882596	25	-0.0045	NEUTRAL	NA	23	"C1orf68,CRCT1,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,SMCP"
TCGA.AA.A01C.01A	1	152484019	153177156	39	-0.1209	NEUTRAL	NA	34	"C1orf68,CRCT1,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.A01W.01A	1	152502172	152560996	10	-0.4896	NEUTRAL	NA	2	"LCE3D,LCE3E"
TCGA.AG.4009.01A	1	152538374	153512503	69	0.1468	NEUTRAL	NA	44	"C1orf68,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,S100A12,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.A00L.01A	1	152538374	156108795	682	-0.3404	NEUTRAL	NA	126	Too-Many
TCGA.AG.A01W.01A	1	152562056	153061136	97	0.2126	NEUTRAL	NA	26	"C1orf68,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE4A,LCE6A,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR3,SPRR4"
TCGA.AA.A02H.01A	1	152573159	153907196	169	-0.2237	NEUTRAL	NA	57	"C1orf68,CHTOP,DENND4B,GATAD2B,ILF2,INTS3,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE4A,LCE6A,LELP1,LOR,NPR1,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SLC27A3,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.3549	1	152598871	186487950	11545	0.0153	NEUTRAL	NA	414	Too-Many
TCGA.AA.3858	1	152954838	249198691	33057	0.3457	NEUTRAL	NA	798	Too-Many
TCGA.AG.A016.01A	1	153012552	153654931	78	-0.1166	NEUTRAL	NA	30	"CHTOP,ILF2,LELP1,LOR,NPR1,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SNAPIN,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G"
TCGA.AG.A01W.01A	1	153098714	153284957	60	-0.269	NEUTRAL	NA	5	"LELP1,LOR,PGLYRP3,PRR9,SPRR2G"
TCGA.CK.5914.01A	1	153177156	153276326	8	0.1106	NEUTRAL	NA	4	"LELP1,LOR,PGLYRP3,PRR9"
TCGA.AG.3909.01A	1	153233376	153431299	28	0.1685	NEUTRAL	NA	9	"LOR,PGLYRP3,PGLYRP4,S100A12,S100A7,S100A7A,S100A7L2,S100A8,S100A9"
TCGA.AA.3811	1	153292638	157133120	764	0.2928	NEUTRAL	NA	127	Too-Many
TCGA.AG.A025.01A	1	153312819	157490765	1016	-0.318	NEUTRAL	NA	128	Too-Many
TCGA.AG.3906.01A	1	153314072	153654132	61	0.0986	NEUTRAL	NA	20	"CHTOP,ILF2,NPR1,PGLYRP4,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SNAPIN"
TCGA.AG.3891.01A	1	153315519	154557240	331	0.3513	NEUTRAL	NA	44	"ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CHTOP,CREB3L4,CRTC2,DENND4B,GATAD2B,HAX1,IL6R,ILF2,INTS3,JTB,NPR1,NUP210L,PGLYRP4,RAB13,RPS27,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SHE,SLC27A3,SLC39A1,SNAPIN,TDRD10,TPM3,UBAP2L,UBE2Q1"
TCGA.AA.3844	1	153316143	157083920	740	0.2367	NEUTRAL	NA	126	Too-Many
TCGA.AG.A00C.01A	1	153318524	153431299	13	-0.0297	NEUTRAL	NA	7	"PGLYRP4,S100A12,S100A7,S100A7A,S100A7L2,S100A8,S100A9"
TCGA.A6.3808.01A	1	153320295	155156322	467	-0.1792	NEUTRAL	NA	63	"ADAM15,ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CHTOP,CKS1B,CREB3L4,CRTC2,DCST1,DCST2,DENND4B,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,GATAD2B,HAX1,IL6R,ILF2,INTS3,JTB,KCNN3,KRTCAP2,LENEP,NPR1,NUP210L,PBXIP1,PGLYRP4,PMVK,PYGO2,RAB13,RPS27,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SHC1,SHE,SLC27A3,SLC39A1,SLC50A1,SNAPIN,TDRD10,TPM3,TRIM46,UBAP2L,UBE2Q1,ZBTB7B"
TCGA.A6.3810.01A	1	153320295	155156322	468	0.142	NEUTRAL	NA	63	"ADAM15,ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CHTOP,CKS1B,CREB3L4,CRTC2,DCST1,DCST2,DENND4B,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,GATAD2B,HAX1,IL6R,ILF2,INTS3,JTB,KCNN3,KRTCAP2,LENEP,NPR1,NUP210L,PBXIP1,PGLYRP4,PMVK,PYGO2,RAB13,RPS27,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SHC1,SHE,SLC27A3,SLC39A1,SLC50A1,SNAPIN,TDRD10,TPM3,TRIM46,UBAP2L,UBE2Q1,ZBTB7B"
TCGA.AG.A01W.01A	1	153324924	153426279	26	0.1375	NEUTRAL	NA	5	"S100A12,S100A7A,S100A7L2,S100A8,S100A9"
TCGA.CK.5914.01A	1	153330723	153631192	41	-0.1681	NEUTRAL	NA	17	"CHTOP,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SNAPIN"
TCGA.AA.A02E.01A	1	153330723	156905733	924	0.0074	NEUTRAL	NA	124	Too-Many
TCGA.AA.A00N.01A	1	153346252	153431299	10	0.0867	NEUTRAL	NA	5	"S100A12,S100A7,S100A7A,S100A7L2,S100A8"
TCGA.AA.A01Q.01A	1	153346252	153533865	19	-0.4938	NEUTRAL	NA	10	"S100A12,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8"
TCGA.AF.3914.01A	1	153430253	153913339	123	0.112	NEUTRAL	NA	18	"CHTOP,DENND4B,GATAD2B,ILF2,INTS3,NPR1,S100A1,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,SLC27A3,SNAPIN"
TCGA.AG.A014.01A	1	153430253	185703925	3158	-0.0884	NEUTRAL	NA	373	Too-Many
TCGA.AG.A01W.01A	1	153432195	153477427	28	-0.0072	NEUTRAL	NA	1	S100A7
TCGA.AG.A01W.01A	1	153492640	153513956	16	0.2049	NEUTRAL	NA	2	"S100A5,S100A6"
TCGA.AG.4009.01A	1	153513781	153588230	13	-0.2139	NEUTRAL	NA	6	"S100A14,S100A16,S100A2,S100A3,S100A4,S100A5"
TCGA.AG.A00C.01A	1	153517103	153617526	19	0.0147	NEUTRAL	NA	8	"CHTOP,S100A1,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4"
TCGA.AA.A00N.01A	1	153517103	153631192	23	0.2176	NEUTRAL	NA	9	"CHTOP,S100A1,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,SNAPIN"
TCGA.AG.3909.01A	1	153517103	153631556	22	-0.1869	NEUTRAL	NA	9	"CHTOP,S100A1,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,SNAPIN"
TCGA.AA.A01Q.01A	1	153535873	153631192	18	0.0615	NEUTRAL	NA	7	"CHTOP,S100A1,S100A13,S100A14,S100A16,S100A2,SNAPIN"
TCGA.AG.A01W.01A	1	153537212	153548640	4	-0.3514	NEUTRAL	NA	1	S100A2
TCGA.AG.A01W.01A	1	153574034	154194677	117	-0.0675	NEUTRAL	NA	23	"C1orf189,C1orf43,CHTOP,CREB3L4,CRTC2,DENND4B,GATAD2B,ILF2,INTS3,JTB,NPR1,NUP210L,RAB13,RPS27,S100A1,S100A13,S100A14,S100A16,SLC27A3,SLC39A1,SNAPIN,TPM3,UBAP2L"
TCGA.AG.4009.01A	1	153591334	153631893	12	0.2875	NEUTRAL	NA	4	"CHTOP,S100A1,S100A13,SNAPIN"
TCGA.AA.3930.01A	1	153591334	153653604	30	0.2717	NEUTRAL	NA	6	"CHTOP,ILF2,NPR1,S100A1,S100A13,SNAPIN"
TCGA.AA.A00D.01A	1	153602948	153654931	26	0.0675	NEUTRAL	NA	6	"CHTOP,ILF2,NPR1,S100A1,S100A13,SNAPIN"
TCGA.AA.A010.01A	1	153631556	153631893	2	0.1216	NEUTRAL	NA	1	SNAPIN
TCGA.AA.A010.01A	1	153633627	153643299	13	-0.3305	NEUTRAL	NA	2	"ILF2,SNAPIN"
TCGA.AG.4009.01A	1	153633627	153658541	22	-0.1849	NEUTRAL	NA	3	"ILF2,NPR1,SNAPIN"
TCGA.AG.A02G.01A	1	153636811	248789431	6859	0.2879	NEUTRAL	NA	759	Too-Many
TCGA.AA.A01Q.01A	1	153642579	153654931	7	-0.3868	NEUTRAL	NA	2	"ILF2,NPR1"
TCGA.AA.A010.01A	1	153651564	153727068	27	0.3777	NEUTRAL	NA	2	"INTS3,NPR1"
TCGA.AA.A00F.01A	1	153654132	154213919	117	0.1646	NEUTRAL	NA	16	"C1orf189,C1orf43,CREB3L4,CRTC2,DENND4B,GATAD2B,INTS3,JTB,NPR1,NUP210L,RAB13,RPS27,SLC27A3,SLC39A1,TPM3,UBAP2L"
TCGA.AA.A01Q.01A	1	153655805	153701060	14	0.3776	NEUTRAL	NA	2	"INTS3,NPR1"
TCGA.AG.A00C.01A	1	153655805	153724708	21	0.0016	NEUTRAL	NA	2	"INTS3,NPR1"
TCGA.AA.A00D.01A	1	153655805	154141730	92	-0.298	NEUTRAL	NA	13	"CREB3L4,CRTC2,DENND4B,GATAD2B,INTS3,JTB,NPR1,NUP210L,RAB13,RPS27,SLC27A3,SLC39A1,TPM3"
TCGA.AA.A01F.01A	1	153657393	153662251	9	-0.3704	NEUTRAL	NA	1	NPR1
TCGA.AG.3909.01A	1	153657393	153740112	31	0.0081	NEUTRAL	NA	2	"INTS3,NPR1"
TCGA.CK.5914.01A	1	153657393	153740112	31	-0.1408	NEUTRAL	NA	2	"INTS3,NPR1"
TCGA.AG.A015.01A	1	153658218	153665573	9	-0.387	NEUTRAL	NA	1	NPR1
TCGA.AG.4009.01A	1	153659080	153800442	53	0.1985	NEUTRAL	NA	4	"GATAD2B,INTS3,NPR1,SLC27A3"
TCGA.AA.A00N.01A	1	153660079	153723531	13	0.2227	NEUTRAL	NA	2	"INTS3,NPR1"
TCGA.AG.3906.01A	1	153661389	154461485	228	0.1438	NEUTRAL	NA	21	"AQP10,ATP8B2,C1orf189,C1orf43,CREB3L4,CRTC2,DENND4B,GATAD2B,HAX1,IL6R,INTS3,JTB,NPR1,NUP210L,RAB13,RPS27,SHE,SLC27A3,SLC39A1,TPM3,UBAP2L"
TCGA.AG.A01L.01A	1	153662251	154960544	303	-0.1387	NEUTRAL	NA	32	"ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CKS1B,CREB3L4,CRTC2,DENND4B,FLAD1,GATAD2B,HAX1,IL6R,INTS3,JTB,KCNN3,NPR1,NUP210L,PBXIP1,PMVK,PYGO2,RAB13,RPS27,SHC1,SHE,SLC27A3,SLC39A1,TDRD10,TPM3,UBAP2L,UBE2Q1"
TCGA.AA.A01F.01A	1	153662723	155156322	314	0.0932	NEUTRAL	NA	44	"ADAM15,ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CKS1B,CREB3L4,CRTC2,DCST1,DCST2,DENND4B,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,GATAD2B,HAX1,IL6R,INTS3,JTB,KCNN3,KRTCAP2,LENEP,NPR1,NUP210L,PBXIP1,PMVK,PYGO2,RAB13,RPS27,SHC1,SHE,SLC27A3,SLC39A1,SLC50A1,TDRD10,TPM3,TRIM46,UBAP2L,UBE2Q1,ZBTB7B"
TCGA.AG.A016.01A	1	153665573	154794536	276	-0.0884	NEUTRAL	NA	26	"ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CREB3L4,CRTC2,DENND4B,GATAD2B,HAX1,IL6R,INTS3,JTB,KCNN3,NPR1,NUP210L,RAB13,RPS27,SHE,SLC27A3,SLC39A1,TDRD10,TPM3,UBAP2L,UBE2Q1"
TCGA.AA.3930.01A	1	153701060	155156322	389	0.2359	NEUTRAL	NA	43	"ADAM15,ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CKS1B,CREB3L4,CRTC2,DCST1,DCST2,DENND4B,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,GATAD2B,HAX1,IL6R,INTS3,JTB,KCNN3,KRTCAP2,LENEP,NUP210L,PBXIP1,PMVK,PYGO2,RAB13,RPS27,SHC1,SHE,SLC27A3,SLC39A1,SLC50A1,TDRD10,TPM3,TRIM46,UBAP2L,UBE2Q1,ZBTB7B"
TCGA.AA.A01Q.01A	1	153713068	153723531	6	-0.1491	NEUTRAL	NA	1	INTS3
TCGA.AA.3939.01A	1	153719385	153907196	50	0.3461	NEUTRAL	NA	4	"DENND4B,GATAD2B,INTS3,SLC27A3"
TCGA.AG.A02X.01A	1	153719385	156931421	908	0.0371	NEUTRAL	NA	105	Too-Many
TCGA.AG.A00C.01A	1	153727068	153957138	79	0.3708	NEUTRAL	NA	9	"CREB3L4,CRTC2,DENND4B,GATAD2B,INTS3,JTB,RAB13,SLC27A3,SLC39A1"
TCGA.AA.A010.01A	1	153730011	153745380	18	-0.1279	NEUTRAL	NA	1	INTS3
TCGA.AA.A010.01A	1	153745704	153800442	19	0.2564	NEUTRAL	NA	3	"GATAD2B,INTS3,SLC27A3"
TCGA.AA.A01Q.01A	1	153747553	153752275	8	-0.1947	NEUTRAL	NA	1	SLC27A3
TCGA.CK.5914.01A	1	153782606	153907196	17	-0.1262	NEUTRAL	NA	2	"DENND4B,GATAD2B"
TCGA.AA.A01Q.01A	1	153782606	153914296	17	0.2695	NEUTRAL	NA	2	"DENND4B,GATAD2B"
TCGA.AA.A00N.01A	1	153784170	153907196	16	-0.234	NEUTRAL	NA	2	"DENND4B,GATAD2B"
TCGA.AA.3967.01A	1	153902724	153915327	19	-0.2251	NEUTRAL	NA	1	DENND4B
TCGA.AA.3939.01A	1	153909954	154519844	188	0.3389	NEUTRAL	NA	18	"AQP10,ATP8B2,C1orf189,C1orf43,CREB3L4,CRTC2,DENND4B,HAX1,IL6R,JTB,NUP210L,RAB13,RPS27,SHE,SLC39A1,TDRD10,TPM3,UBAP2L"
TCGA.AA.A02H.01A	1	153911355	157490765	841	-0.2265	NEUTRAL	NA	105	Too-Many
TCGA.AG.A01N.01A	1	153911355	157494016	875	0.0979	NEUTRAL	NA	105	Too-Many
TCGA.AA.A017.01A	1	153911355	249210793	6705	-0.0124	NEUTRAL	NA	763	Too-Many
TCGA.AF.3914.01A	1	153913649	153941760	19	-0.2916	NEUTRAL	NA	4	"CREB3L4,CRTC2,DENND4B,SLC39A1"
TCGA.AA.A01K.01A	1	153913649	155156322	303	-0.2307	NEUTRAL	NA	40	"ADAM15,ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CKS1B,CREB3L4,CRTC2,DCST1,DCST2,DENND4B,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,HAX1,IL6R,JTB,KCNN3,KRTCAP2,LENEP,NUP210L,PBXIP1,PMVK,PYGO2,RAB13,RPS27,SHC1,SHE,SLC39A1,SLC50A1,TDRD10,TPM3,TRIM46,UBAP2L,UBE2Q1,ZBTB7B"
TCGA.AA.3967.01A	1	153916487	154680410	204	0.3196	NEUTRAL	NA	22	"ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CREB3L4,CRTC2,DENND4B,HAX1,IL6R,JTB,KCNN3,NUP210L,RAB13,RPS27,SHE,SLC39A1,TDRD10,TPM3,UBAP2L,UBE2Q1"
TCGA.AA.A01Q.01A	1	153920583	154115875	29	-0.5038	NEUTRAL	NA	7	"CREB3L4,CRTC2,JTB,NUP210L,RAB13,RPS27,SLC39A1"
TCGA.AA.A010.01A	1	153930804	153955938	14	-0.1092	NEUTRAL	NA	5	"CREB3L4,CRTC2,JTB,RAB13,SLC39A1"
TCGA.AG.4009.01A	1	153932544	154172887	72	0.1661	NEUTRAL	NA	8	"C1orf189,CREB3L4,JTB,NUP210L,RAB13,RPS27,SLC39A1,TPM3"
TCGA.AF.3914.01A	1	153945223	154245130	102	0.1812	NEUTRAL	NA	10	"C1orf189,C1orf43,CREB3L4,HAX1,JTB,NUP210L,RAB13,RPS27,TPM3,UBAP2L"
TCGA.AA.A00O.01A	1	153945223	156925445	786	-0.1215	NEUTRAL	NA	99	"ADAM15,ADAR,APOA1BP,AQP10,ARHGEF11,ARHGEF2,ASH1L,ATP8B2,BCAN,BGLAP,C1orf189,C1orf43,C1orf61,CCT3,CHRNB2,CKS1B,CLK2,CRABP2,CREB3L4,DAP3,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,FLAD1,GBA,GLMP,GON4L,GPATCH4,HAPLN2,HAX1,HCN3,HDGF,IL6R,INSRR,IQGAP3,ISG20L2,JTB,KCNN3,KIAA0907,KRTCAP2,LAMTOR2,LENEP,LMNA,LRRC71,MEF2D,MEX3A,MRPL24,MSTO1,MTX1,MUC1,NES,NTRK1,NUP210L,PAQR6,PBXIP1,PEAR1,PKLR,PMF1,PMF1-BGLAP,PMVK,PRCC,PYGO2,RAB13,RAB25,RHBG,RIT1,RPS27,RRNAD1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SH2D2A,SHC1,SHE,SLC25A44,SLC50A1,SMG5,SSR2,SYT11,TDRD10,THBS3,TMEM79,TPM3,TRIM46,TSACC,TTC24,UBAP2L,UBE2Q1,UBQLN4,VHLL,YY1AP1,ZBTB7B"
TCGA.AA.3509.01A	1	153955637	154208975	75	0.039	NEUTRAL	NA	7	"C1orf189,C1orf43,NUP210L,RAB13,RPS27,TPM3,UBAP2L"
TCGA.AG.3909.01A	1	153955938	153967513	9	-0.4784	NEUTRAL	NA	3	"NUP210L,RAB13,RPS27"
TCGA.AG.A00C.01A	1	153958542	154172887	58	-0.0077	NEUTRAL	NA	5	"C1orf189,NUP210L,RAB13,RPS27,TPM3"
TCGA.AA.A00N.01A	1	153973332	154172887	51	0.2704	NEUTRAL	NA	3	"C1orf189,NUP210L,TPM3"
TCGA.AG.3909.01A	1	153973332	154177998	52	0.1401	NEUTRAL	NA	3	"C1orf189,NUP210L,TPM3"
TCGA.CK.5914.01A	1	153994590	154067364	17	0.1097	NEUTRAL	NA	1	NUP210L
TCGA.AA.A010.01A	1	154018534	154091118	16	0.2718	NEUTRAL	NA	1	NUP210L
TCGA.F5.6464	1	154108386	249198691	32723	0.3773	NEUTRAL	NA	755	Too-Many
TCGA.CK.5914.01A	1	154125185	154201039	28	-0.1695	NEUTRAL	NA	5	"C1orf189,C1orf43,NUP210L,TPM3,UBAP2L"
TCGA.CM.6165.01A	1	154127277	231906531	6381	0.035	NEUTRAL	NA	642	Too-Many
TCGA.AA.A01Q.01A	1	154130160	154296013	51	0.253	NEUTRAL	NA	6	"AQP10,C1orf189,C1orf43,HAX1,TPM3,UBAP2L"
TCGA.AA.A00D.01A	1	154163620	154213919	19	-0.1229	NEUTRAL	NA	4	"C1orf189,C1orf43,TPM3,UBAP2L"
TCGA.AA.A010.01A	1	154171874	154192750	10	0.0709	NEUTRAL	NA	3	"C1orf189,C1orf43,UBAP2L"
TCGA.AG.4009.01A	1	154177998	154245130	34	-0.2197	NEUTRAL	NA	4	"C1orf189,C1orf43,HAX1,UBAP2L"
TCGA.AG.A01W.01A	1	154198026	154270330	17	-0.4856	NEUTRAL	NA	2	"HAX1,UBAP2L"
TCGA.AG.A00C.01A	1	154207015	154296013	30	0.0737	NEUTRAL	NA	3	"AQP10,HAX1,UBAP2L"
TCGA.AA.A00F.01A	1	154215635	154246226	20	-0.1777	NEUTRAL	NA	2	"HAX1,UBAP2L"
TCGA.AG.3909.01A	1	154218652	154296776	26	0.2314	NEUTRAL	NA	3	"AQP10,HAX1,UBAP2L"
TCGA.AA.A010.01A	1	154221678	154246226	21	-0.0787	NEUTRAL	NA	2	"HAX1,UBAP2L"
TCGA.AA.A00D.01A	1	154242622	158576198	834	-0.3913	NEUTRAL	NA	112	Too-Many
TCGA.AF.3914.01A	1	154245792	154296776	8	-0.5065	NEUTRAL	NA	2	"AQP10,HAX1"
TCGA.AA.A00F.01A	1	154247351	156278943	491	0.1619	NEUTRAL	NA	67	"ADAM15,ADAR,AQP10,ARHGEF2,ASH1L,ATP8B2,BGLAP,CCT3,CHRNB2,CKS1B,CLK2,DAP3,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,FLAD1,GBA,GLMP,GON4L,HAX1,HCN3,IL6R,KCNN3,KIAA0907,KRTCAP2,LAMTOR2,LENEP,LMNA,MEX3A,MSTO1,MTX1,MUC1,PAQR6,PBXIP1,PKLR,PMF1,PMF1-BGLAP,PMVK,PYGO2,RAB25,RIT1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SHC1,SHE,SLC25A44,SLC50A1,SMG5,SSR2,SYT11,TDRD10,THBS3,TMEM79,TRIM46,UBE2Q1,UBQLN4,VHLL,YY1AP1,ZBTB7B"
TCGA.AG.A01W.01A	1	154273346	154777098	148	0.098	NEUTRAL	NA	9	"ADAR,AQP10,ATP8B2,CHRNB2,IL6R,KCNN3,SHE,TDRD10,UBE2Q1"
TCGA.AF.3914.01A	1	154312940	154519844	39	-0.0101	NEUTRAL	NA	4	"ATP8B2,IL6R,SHE,TDRD10"
TCGA.AA.A00N.01A	1	154313321	154320844	11	-0.3969	NEUTRAL	NA	1	ATP8B2
TCGA.AG.A00C.01A	1	154314881	154461485	24	0.1041	NEUTRAL	NA	3	"ATP8B2,IL6R,SHE"
TCGA.AG.4009.01A	1	154317757	154321298	5	-0.1341	NEUTRAL	NA	1	ATP8B2
TCGA.AA.A01Q.01A	1	154318669	154517244	24	-0.1799	NEUTRAL	NA	4	"ATP8B2,IL6R,SHE,TDRD10"
TCGA.AG.3909.01A	1	154321298	154461485	14	-0.2791	NEUTRAL	NA	3	"ATP8B2,IL6R,SHE"
TCGA.AG.4009.01A	1	154401633	154458367	11	0.2007	NEUTRAL	NA	2	"IL6R,SHE"
TCGA.AA.A00N.01A	1	154422321	154461485	7	-0.3107	NEUTRAL	NA	2	"IL6R,SHE"
TCGA.AA.3939.01A	1	154522830	154794536	39	0.0708	NEUTRAL	NA	4	"ADAR,CHRNB2,KCNN3,UBE2Q1"
TCGA.AA.A01Q.01A	1	154540452	155012911	82	-0.2564	NEUTRAL	NA	13	"ADAR,CHRNB2,CKS1B,DCST1,DCST2,FLAD1,KCNN3,LENEP,PBXIP1,PMVK,PYGO2,SHC1,ZBTB7B"
TCGA.AG.3906.01A	1	154548210	154561039	7	0.3212	NEUTRAL	NA	2	"ADAR,CHRNB2"
TCGA.AF.3914.01A	1	154548210	154931256	40	-0.0709	NEUTRAL	NA	6	"ADAR,CHRNB2,KCNN3,PBXIP1,PMVK,PYGO2"
TCGA.AG.3891.01A	1	154557644	154574128	13	-0.009	NEUTRAL	NA	1	ADAR
TCGA.AG.3906.01A	1	154561792	154574128	8	-0.033	NEUTRAL	NA	1	ADAR
TCGA.AA.A00N.01A	1	154580376	154923668	22	0.3425	NEUTRAL	NA	4	"ADAR,KCNN3,PBXIP1,PMVK"
TCGA.AG.3891.01A	1	154680410	154842379	10	-0.2209	NEUTRAL	NA	1	KCNN3
TCGA.AG.A00C.01A	1	154680410	154904763	14	-0.2753	NEUTRAL	NA	2	"KCNN3,PMVK"
TCGA.AG.3909.01A	1	154680410	154917445	15	-0.0473	NEUTRAL	NA	3	"KCNN3,PBXIP1,PMVK"
TCGA.AA.3967.01A	1	154685874	154909014	14	-0.2268	NEUTRAL	NA	2	"KCNN3,PMVK"
TCGA.AG.3906.01A	1	154705438	154909014	10	-0.0214	NEUTRAL	NA	2	"KCNN3,PMVK"
TCGA.AG.4009.01A	1	154705438	154931256	18	0.1574	NEUTRAL	NA	4	"KCNN3,PBXIP1,PMVK,PYGO2"
TCGA.AG.A01W.01A	1	154780335	154820165	21	-0.4685	NEUTRAL	NA	1	KCNN3
TCGA.AG.A016.01A	1	154832081	154966072	35	-0.4367	NEUTRAL	NA	8	"CKS1B,FLAD1,KCNN3,LENEP,PBXIP1,PMVK,PYGO2,SHC1"
TCGA.AG.A01W.01A	1	154832423	155077760	67	-0.0328	NEUTRAL	NA	14	"ADAM15,CKS1B,DCST1,DCST2,EFNA3,EFNA4,FLAD1,KCNN3,LENEP,PBXIP1,PMVK,PYGO2,SHC1,ZBTB7B"
TCGA.AG.3891.01A	1	154897578	154956203	28	0.2479	NEUTRAL	NA	6	"CKS1B,FLAD1,PBXIP1,PMVK,PYGO2,SHC1"
TCGA.AG.A00C.01A	1	154909014	155025097	55	0.2763	NEUTRAL	NA	11	"ADAM15,CKS1B,DCST1,DCST2,FLAD1,LENEP,PBXIP1,PMVK,PYGO2,SHC1,ZBTB7B"
TCGA.AG.3906.01A	1	154917445	155156322	93	0.3439	NEUTRAL	NA	17	"ADAM15,CKS1B,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,KRTCAP2,LENEP,PBXIP1,PYGO2,SHC1,SLC50A1,TRIM46,ZBTB7B"
TCGA.AA.3967.01A	1	154917445	156884400	617	0.3602	NEUTRAL	NA	77	"ADAM15,APOA1BP,ARHGEF2,ASH1L,BCAN,BGLAP,C1orf61,CCT3,CKS1B,CLK2,CRABP2,DAP3,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,FLAD1,GBA,GLMP,GON4L,GPATCH4,HAPLN2,HCN3,HDGF,INSRR,IQGAP3,ISG20L2,KIAA0907,KRTCAP2,LAMTOR2,LENEP,LMNA,MEF2D,MEX3A,MRPL24,MSTO1,MTX1,MUC1,NES,NTRK1,PAQR6,PBXIP1,PEAR1,PKLR,PMF1,PMF1-BGLAP,PRCC,PYGO2,RAB25,RHBG,RIT1,RRNAD1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SH2D2A,SHC1,SLC25A44,SLC50A1,SMG5,SSR2,SYT11,THBS3,TMEM79,TRIM46,TSACC,TTC24,UBQLN4,VHLL,YY1AP1,ZBTB7B"
TCGA.AA.A010.01A	1	154923668	155112410	84	-0.4574	NEUTRAL	NA	15	"ADAM15,CKS1B,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,LENEP,PBXIP1,PYGO2,SHC1,SLC50A1,ZBTB7B"
TCGA.AF.3914.01A	1	154942481	154951131	4	-0.2069	NEUTRAL	NA	2	"CKS1B,SHC1"
TCGA.AG.4009.01A	1	154950412	155005523	23	0.1416	NEUTRAL	NA	5	"CKS1B,DCST2,FLAD1,LENEP,ZBTB7B"
TCGA.AF.3914.01A	1	154956203	155005523	21	0.2151	NEUTRAL	NA	4	"DCST2,FLAD1,LENEP,ZBTB7B"
TCGA.AG.A01L.01A	1	154961994	155018318	28	-0.446	NEUTRAL	NA	5	"DCST1,DCST2,FLAD1,LENEP,ZBTB7B"
TCGA.AG.A016.01A	1	154987090	154990988	4	0.283	NEUTRAL	NA	1	ZBTB7B
TCGA.AG.3891.01A	1	154987090	156347740	403	0.3455	NEUTRAL	NA	52	"ADAM15,ARHGEF2,ASH1L,BGLAP,CCT3,CLK2,DAP3,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,GBA,GLMP,GON4L,HCN3,KIAA0907,KRTCAP2,LAMTOR2,LMNA,MEX3A,MSTO1,MTX1,MUC1,PAQR6,PKLR,PMF1,PMF1-BGLAP,RAB25,RHBG,RIT1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SLC25A44,SLC50A1,SMG5,SSR2,SYT11,THBS3,TMEM79,TRIM46,TSACC,UBQLN4,VHLL,YY1AP1,ZBTB7B"
TCGA.AG.A016.01A	1	154995605	155025097	23	-0.4104	NEUTRAL	NA	3	"ADAM15,DCST1,DCST2"
TCGA.AF.3914.01A	1	155005893	155015786	8	-0.1908	NEUTRAL	NA	2	"DCST1,DCST2"
TCGA.AG.4009.01A	1	155005893	155015786	7	-0.2009	NEUTRAL	NA	2	"DCST1,DCST2"
TCGA.AG.A01L.01A	1	155019625	155025875	5	-0.0124	NEUTRAL	NA	2	"ADAM15,DCST1"
TCGA.AA.A02K.01A	1	155023803	155108717	27	-0.0926	NEUTRAL	NA	5	"ADAM15,EFNA1,EFNA3,EFNA4,SLC50A1"
TCGA.AG.A01L.01A	1	155026345	155034325	10	0.3562	NEUTRAL	NA	1	ADAM15
TCGA.AG.A00C.01A	1	155032639	155747371	197	0.3099	NEUTRAL	NA	25	"ADAM15,ASH1L,CLK2,DAP3,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,GBA,GON4L,HCN3,KRTCAP2,MSTO1,MTX1,MUC1,PKLR,RUSC1,RUSC1-AS1,SCAMP3,SLC50A1,THBS3,TRIM46,YY1AP1"
TCGA.AF.3914.01A	1	155034684	155175984	49	-0.3208	NEUTRAL	NA	10	"ADAM15,DPM3,EFNA1,EFNA3,EFNA4,KRTCAP2,MUC1,SLC50A1,THBS3,TRIM46"
TCGA.AG.A016.01A	1	155039169	156510479	392	-0.1253	NEUTRAL	NA	51	"ARHGEF2,ASH1L,BGLAP,C1orf61,CCT3,CLK2,DAP3,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,GBA,GLMP,GON4L,HCN3,IQGAP3,KIAA0907,KRTCAP2,LAMTOR2,LMNA,MEF2D,MEX3A,MSTO1,MTX1,MUC1,PAQR6,PKLR,PMF1,PMF1-BGLAP,RAB25,RHBG,RIT1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SLC25A44,SLC50A1,SMG5,SSR2,SYT11,THBS3,TMEM79,TRIM46,TSACC,UBQLN4,VHLL,YY1AP1"
TCGA.AG.A01L.01A	1	155039169	172542979	1877	-0.1713	NEUTRAL	NA	246	Too-Many
TCGA.AG.4009.01A	1	155041297	155142209	14	-0.3702	NEUTRAL	NA	6	"DPM3,EFNA1,EFNA3,EFNA4,KRTCAP2,SLC50A1"
TCGA.AA.A01Q.01A	1	155051441	155187721	59	-0.0964	NEUTRAL	NA	9	"DPM3,EFNA1,EFNA3,KRTCAP2,MTX1,MUC1,SLC50A1,THBS3,TRIM46"
TCGA.AG.A01W.01A	1	155101094	155141694	17	-0.4333	NEUTRAL	NA	3	"DPM3,EFNA1,SLC50A1"
TCGA.AA.A02K.01A	1	155109257	155156293	17	0.2803	NEUTRAL	NA	4	"DPM3,KRTCAP2,SLC50A1,TRIM46"
TCGA.AG.4009.01A	1	155144986	155154299	9	0.0358	NEUTRAL	NA	2	"KRTCAP2,TRIM46"
TCGA.AG.4009.01A	1	155156322	155172571	16	-0.51	NEUTRAL	NA	3	"MUC1,THBS3,TRIM46"
TCGA.AG.3909.01A	1	155156322	155209365	39	-0.2725	NEUTRAL	NA	5	"GBA,MTX1,MUC1,THBS3,TRIM46"
TCGA.A6.3810.01A	1	155158549	155170200	13	-0.166	NEUTRAL	NA	2	"MUC1,THBS3"
TCGA.AA.A02K.01A	1	155158550	155162509	5	-0.3141	NEUTRAL	NA	1	MUC1
TCGA.AA.A01K.01A	1	155161725	157062394	526	-0.1949	NEUTRAL	NA	63	"APOA1BP,ARHGEF11,ARHGEF2,ASH1L,BCAN,BGLAP,C1orf61,CCT3,CLK2,CRABP2,DAP3,ETV3L,FAM189B,FDPS,GBA,GLMP,GON4L,GPATCH4,HAPLN2,HCN3,HDGF,INSRR,IQGAP3,ISG20L2,KIAA0907,LAMTOR2,LMNA,LRRC71,MEF2D,MEX3A,MRPL24,MSTO1,MTX1,MUC1,NES,NTRK1,PAQR6,PEAR1,PKLR,PMF1,PMF1-BGLAP,PRCC,RAB25,RHBG,RIT1,RRNAD1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SH2D2A,SLC25A44,SMG5,SSR2,SYT11,THBS3,TMEM79,TSACC,TTC24,UBQLN4,VHLL,YY1AP1"
TCGA.AA.3930.01A	1	155164919	155265229	77	0.1116	NEUTRAL	NA	8	"CLK2,FAM189B,GBA,HCN3,MTX1,PKLR,SCAMP3,THBS3"
TCGA.AA.A02K.01A	1	155165571	155649154	124	0.1387	NEUTRAL	NA	14	"ASH1L,CLK2,FAM189B,FDPS,GBA,HCN3,MSTO1,MTX1,PKLR,RUSC1,RUSC1-AS1,SCAMP3,THBS3,YY1AP1"
TCGA.AG.A01W.01A	1	155168790	155181465	14	0.0763	NEUTRAL	NA	2	"MTX1,THBS3"
TCGA.A6.3810.01A	1	155170641	196716192	3237	0.351	NEUTRAL	NA	335	Too-Many
TCGA.AG.3906.01A	1	155172571	155927472	196	0.0988	NEUTRAL	NA	21	"ARHGEF2,ASH1L,CLK2,DAP3,FAM189B,FDPS,GBA,GON4L,HCN3,KIAA0907,MSTO1,MTX1,PKLR,RIT1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SYT11,THBS3,YY1AP1"
TCGA.AA.A01C.01A	1	155172571	157550038	564	-0.4647	NEUTRAL	NA	65	"APOA1BP,ARHGEF11,ARHGEF2,ASH1L,BCAN,BGLAP,C1orf61,CCT3,CLK2,CRABP2,DAP3,ETV3,ETV3L,FAM189B,FCRL4,FCRL5,FDPS,GBA,GLMP,GON4L,GPATCH4,HAPLN2,HCN3,HDGF,INSRR,IQGAP3,ISG20L2,KIAA0907,LAMTOR2,LMNA,LRRC71,MEF2D,MEX3A,MRPL24,MSTO1,MTX1,NES,NTRK1,PAQR6,PEAR1,PKLR,PMF1,PMF1-BGLAP,PRCC,RAB25,RHBG,RIT1,RRNAD1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SH2D2A,SLC25A44,SMG5,SSR2,SYT11,THBS3,TMEM79,TSACC,TTC24,UBQLN4,VHLL,YY1AP1"
TCGA.AG.4009.01A	1	155172832	155187721	16	0.0742	NEUTRAL	NA	2	"MTX1,THBS3"
TCGA.AF.3914.01A	1	155177547	156013778	215	0.156	NEUTRAL	NA	23	"ARHGEF2,ASH1L,CLK2,DAP3,FAM189B,FDPS,GBA,GON4L,HCN3,KIAA0907,MSTO1,MTX1,PKLR,RIT1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SSR2,SYT11,THBS3,UBQLN4,YY1AP1"
TCGA.AG.A008.01A	1	155184112	202574676	3610	0.0731	NEUTRAL	NA	380	Too-Many
TCGA.A6.3808.01A	1	155185310	156396536	335	-0.2197	NEUTRAL	NA	39	"ARHGEF2,ASH1L,BGLAP,C1orf61,CCT3,CLK2,DAP3,FAM189B,FDPS,GBA,GLMP,GON4L,HCN3,KIAA0907,LAMTOR2,LMNA,MEX3A,MSTO1,PAQR6,PKLR,PMF1,PMF1-BGLAP,RAB25,RHBG,RIT1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SLC25A44,SMG5,SSR2,SYT11,TMEM79,TSACC,UBQLN4,VHLL,YY1AP1"
TCGA.AG.A01W.01A	1	155187941	155985988	75	0.2505	NEUTRAL	NA	20	"ARHGEF2,ASH1L,CLK2,DAP3,FAM189B,FDPS,GBA,GON4L,HCN3,KIAA0907,MSTO1,PKLR,RIT1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SSR2,SYT11,YY1AP1"
TCGA.AG.4009.01A	1	155204764	155261499	45	-0.3404	NEUTRAL	NA	6	"CLK2,FAM189B,GBA,HCN3,PKLR,SCAMP3"
TCGA.AA.A010.01A	1	155204764	155330050	80	0.0886	NEUTRAL	NA	10	"ASH1L,CLK2,FAM189B,FDPS,GBA,HCN3,PKLR,RUSC1,RUSC1-AS1,SCAMP3"
TCGA.AA.3861.01A	1	155230070	157488431	539	0.0465	NEUTRAL	NA	60	"APOA1BP,ARHGEF11,ARHGEF2,ASH1L,BCAN,BGLAP,C1orf61,CCT3,CLK2,CRABP2,DAP3,ETV3,ETV3L,FCRL5,FDPS,GLMP,GON4L,GPATCH4,HAPLN2,HCN3,HDGF,INSRR,IQGAP3,ISG20L2,KIAA0907,LAMTOR2,LMNA,LRRC71,MEF2D,MEX3A,MRPL24,MSTO1,NES,NTRK1,PAQR6,PEAR1,PKLR,PMF1,PMF1-BGLAP,PRCC,RAB25,RHBG,RIT1,RRNAD1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SH2D2A,SLC25A44,SMG5,SSR2,SYT11,TMEM79,TSACC,TTC24,UBQLN4,VHLL,YY1AP1"
TCGA.AA.A01Q.01A	1	155255487	155290160	18	-0.306	NEUTRAL	NA	3	"FDPS,HCN3,PKLR"
TCGA.AG.4009.01A	1	155262931	155904047	126	0.0633	NEUTRAL	NA	12	"ASH1L,DAP3,FDPS,GON4L,KIAA0907,MSTO1,PKLR,RIT1,RUSC1,RUSC1-AS1,SYT11,YY1AP1"
TCGA.AA.3930.01A	1	155279560	157105216	506	0.293	NEUTRAL	NA	55	"APOA1BP,ARHGEF11,ARHGEF2,ASH1L,BCAN,BGLAP,C1orf61,CCT3,CRABP2,DAP3,ETV3,ETV3L,FDPS,GLMP,GON4L,GPATCH4,HAPLN2,HDGF,INSRR,IQGAP3,ISG20L2,KIAA0907,LAMTOR2,LMNA,LRRC71,MEF2D,MEX3A,MRPL24,MSTO1,NES,NTRK1,PAQR6,PEAR1,PMF1,PMF1-BGLAP,PRCC,RAB25,RHBG,RIT1,RRNAD1,RUSC1,RUSC1-AS1,RXFP4,SEMA4A,SH2D2A,SLC25A44,SMG5,SSR2,SYT11,TMEM79,TSACC,TTC24,UBQLN4,VHLL,YY1AP1"
TCGA.AA.A01Q.01A	1	155290598	155920589	106	0.1513	NEUTRAL	NA	12	"ARHGEF2,ASH1L,DAP3,GON4L,KIAA0907,MSTO1,RIT1,RUSC1,RUSC1-AS1,RXFP4,SYT11,YY1AP1"
TCGA.CK.5914.01A	1	155294162	155452185	31	0.1515	NEUTRAL	NA	2	"ASH1L,RUSC1"
TCGA.AG.3909.01A	1	155300156	155309041	4	-0.2685	NEUTRAL	NA	2	"ASH1L,RUSC1"
TCGA.AG.3909.01A	1	155311680	155579992	24	0.1938	NEUTRAL	NA	2	"ASH1L,MSTO1"
TCGA.AA.A00N.01A	1	155313920	155322460	5	-0.2455	NEUTRAL	NA	1	ASH1L
TCGA.AA.3509.01A	1	155319090	155429540	13	-0.0988	NEUTRAL	NA	1	ASH1L
TCGA.CK.5914.01A	1	155490900	155686758	21	-0.3219	NEUTRAL	NA	4	"ASH1L,DAP3,MSTO1,YY1AP1"
TCGA.AG.3909.01A	1	155580797	155724129	32	-0.4091	NEUTRAL	NA	4	"DAP3,GON4L,MSTO1,YY1AP1"
TCGA.AA.A010.01A	1	155642303	155658646	7	0.0977	NEUTRAL	NA	1	YY1AP1
TCGA.AA.3509.01A	1	155650126	155706700	13	-0.1116	NEUTRAL	NA	2	"DAP3,YY1AP1"
TCGA.CK.5914.01A	1	155691256	155730197	15	0.0502	NEUTRAL	NA	2	"DAP3,GON4L"
TCGA.AA.A02K.01A	1	155695126	156100379	113	0.2065	NEUTRAL	NA	13	"ARHGEF2,DAP3,GON4L,KIAA0907,LAMTOR2,LMNA,MEX3A,RAB25,RIT1,RXFP4,SSR2,SYT11,UBQLN4"
TCGA.AA.A010.01A	1	155706700	155747371	17	0.3547	NEUTRAL	NA	2	"DAP3,GON4L"
TCGA.AG.3909.01A	1	155726727	155783387	17	0.2598	NEUTRAL	NA	1	GON4L
TCGA.AA.A00N.01A	1	155731932	155850947	26	0.2463	NEUTRAL	NA	2	"GON4L,SYT11"
TCGA.AG.A00C.01A	1	155753730	155887263	25	-0.0711	NEUTRAL	NA	4	"GON4L,KIAA0907,RIT1,SYT11"
TCGA.CK.5914.01A	1	155755049	155792038	10	0.0876	NEUTRAL	NA	1	GON4L
TCGA.AG.3909.01A	1	155784101	155823040	8	-0.4339	NEUTRAL	NA	1	GON4L
TCGA.CK.5914.01A	1	155796616	155934727	40	-0.5107	NEUTRAL	NA	6	"ARHGEF2,GON4L,KIAA0907,RIT1,RXFP4,SYT11"
TCGA.AG.3909.01A	1	155829473	155850947	4	0.2978	NEUTRAL	NA	1	SYT11
TCGA.AA.3855	1	155868624	249198691	32331	0.2197	NEUTRAL	NA	704	Too-Many
TCGA.AA.A00N.01A	1	155870171	155934727	34	-0.3596	NEUTRAL	NA	4	"ARHGEF2,KIAA0907,RIT1,RXFP4"
TCGA.AG.A00C.01A	1	155891144	156437343	154	0.2739	NEUTRAL	NA	24	"ARHGEF2,BGLAP,C1orf61,CCT3,GLMP,KIAA0907,LAMTOR2,LMNA,MEF2D,MEX3A,PAQR6,PMF1,PMF1-BGLAP,RAB25,RHBG,RXFP4,SEMA4A,SLC25A44,SMG5,SSR2,TMEM79,TSACC,UBQLN4,VHLL"
TCGA.AA.A004.01A	1	155911453	249210793	6131	-0.0833	NEUTRAL	NA	703	Too-Many
TCGA.AA.A01Q.01A	1	155921222	156252374	103	-0.3353	NEUTRAL	NA	14	"ARHGEF2,BGLAP,LAMTOR2,LMNA,MEX3A,PAQR6,PMF1,PMF1-BGLAP,RAB25,SEMA4A,SLC25A44,SMG5,SSR2,UBQLN4"
TCGA.CK.5914.01A	1	155935067	156018281	19	0.3033	NEUTRAL	NA	3	"ARHGEF2,SSR2,UBQLN4"
TCGA.AG.4009.01A	1	155979284	156011224	7	0.1183	NEUTRAL	NA	2	"SSR2,UBQLN4"
TCGA.AA.A010.01A	1	156006721	156011224	2	-0.3265	NEUTRAL	NA	1	UBQLN4
TCGA.AA.A00N.01A	1	156018281	156280689	97	-0.493	NEUTRAL	NA	16	"BGLAP,CCT3,GLMP,LAMTOR2,LMNA,MEX3A,PAQR6,PMF1,PMF1-BGLAP,RAB25,SEMA4A,SLC25A44,SMG5,TMEM79,UBQLN4,VHLL"
TCGA.CK.5914.01A	1	156020033	156223170	68	-0.3723	NEUTRAL	NA	12	"BGLAP,LAMTOR2,LMNA,MEX3A,PAQR6,PMF1,PMF1-BGLAP,RAB25,SEMA4A,SLC25A44,SMG5,UBQLN4"
TCGA.AF.3914.01A	1	156027726	156051286	9	-0.166	NEUTRAL	NA	3	"LAMTOR2,MEX3A,RAB25"
TCGA.AG.A01W.01A	1	156068285	156331067	19	-0.1105	NEUTRAL	NA	13	"BGLAP,CCT3,GLMP,LMNA,PAQR6,PMF1,PMF1-BGLAP,SEMA4A,SLC25A44,SMG5,TMEM79,TSACC,VHLL"
TCGA.AG.4009.01A	1	156084683	156124319	12	0.1128	NEUTRAL	NA	2	"LMNA,SEMA4A"
TCGA.AA.A010.01A	1	156084683	156309468	90	0.2553	NEUTRAL	NA	13	"BGLAP,CCT3,GLMP,LMNA,PAQR6,PMF1,PMF1-BGLAP,SEMA4A,SLC25A44,SMG5,TMEM79,TSACC,VHLL"
TCGA.AG.3906.01A	1	156084683	156338965	88	0.2743	NEUTRAL	NA	13	"BGLAP,CCT3,GLMP,LMNA,PAQR6,PMF1,PMF1-BGLAP,SEMA4A,SLC25A44,SMG5,TMEM79,TSACC,VHLL"
TCGA.AA.A02K.01A	1	156104144	156105684	4	-0.3902	NEUTRAL	NA	1	LMNA
TCGA.AA.A00A.01A	1	156104156	156108795	9	0.2138	NEUTRAL	NA	1	LMNA
TCGA.AA.A02K.01A	1	156105989	156213612	30	0.1784	NEUTRAL	NA	7	"BGLAP,LMNA,PAQR6,PMF1,PMF1-BGLAP,SEMA4A,SLC25A44"
TCGA.AA.A00A.01A	1	156124319	227192567	4570	-0.4237	NEUTRAL	NA	534	Too-Many
TCGA.AF.3914.01A	1	156132688	156214884	21	-0.0553	NEUTRAL	NA	6	"BGLAP,PAQR6,PMF1,PMF1-BGLAP,SEMA4A,SLC25A44"
TCGA.AG.4009.01A	1	156206047	156268509	41	0.1306	NEUTRAL	NA	8	"BGLAP,GLMP,PAQR6,PMF1,PMF1-BGLAP,SMG5,TMEM79,VHLL"
TCGA.AA.A00L.01A	1	156212263	156554620	106	-0.2245	NEUTRAL	NA	14	"BGLAP,C1orf61,CCT3,GLMP,IQGAP3,MEF2D,PAQR6,PMF1-BGLAP,RHBG,SMG5,TMEM79,TSACC,TTC24,VHLL"
TCGA.AA.A02K.01A	1	156214431	156222159	8	-0.2528	NEUTRAL	NA	2	"PAQR6,SMG5"
TCGA.AA.A02K.01A	1	156222669	156386510	53	0.2654	NEUTRAL	NA	8	"C1orf61,CCT3,GLMP,RHBG,SMG5,TMEM79,TSACC,VHLL"
TCGA.AA.A02J.01A	1	156223170	249210793	6071	-0.0664	NEUTRAL	NA	689	Too-Many
TCGA.AA.A01Q.01A	1	156254980	156281802	14	0.2985	NEUTRAL	NA	4	"CCT3,GLMP,TMEM79,VHLL"
TCGA.AG.4009.01A	1	156278943	156386509	28	-0.4795	NEUTRAL	NA	4	"C1orf61,CCT3,RHBG,TSACC"
TCGA.AF.3914.01A	1	156281802	156351117	17	-0.1202	NEUTRAL	NA	3	"CCT3,RHBG,TSACC"
TCGA.CK.5914.01A	1	156338965	156498250	30	-0.3876	NEUTRAL	NA	4	"C1orf61,IQGAP3,MEF2D,RHBG"
TCGA.AF.3914.01A	1	156374279	156554620	53	0.2604	NEUTRAL	NA	4	"C1orf61,IQGAP3,MEF2D,TTC24"
TCGA.AG.3891.01A	1	156376854	156555457	52	0.3116	NEUTRAL	NA	4	"C1orf61,IQGAP3,MEF2D,TTC24"
TCGA.AA.A00F.01A	1	156377585	160990735	650	-0.0666	NEUTRAL	NA	94	"ACKR1,AIM2,APCS,APOA1BP,ARHGEF11,ATP1A2,ATP1A4,BCAN,C1orf204,C1orf61,CADM3,CASQ1,CD1A,CD1B,CD1C,CD1D,CD1E,CD244,CD48,CD5L,CD84,CFAP45,COPA,CRABP2,CRP,DCAF8,DUSP23,ETV3,ETV3L,F11R,FCER1A,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,FCRL6,GPATCH4,HAPLN2,HDGF,IFI16,IGSF8,IGSF9,INSRR,IQGAP3,ISG20L2,ITLN1,ITLN2,KCNJ10,KCNJ9,KIRREL,LRRC71,LY9,MEF2D,MNDA,MRPL24,NCSTN,NES,NHLH1,NTRK1,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PEA15,PEAR1,PEX19,PIGM,PRCC,PYHIN1,RRNAD1,SH2D2A,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,SPTA1,TAGLN2,TTC24,VANGL2,VSIG8"
TCGA.A6.3807	1	156379143	192478873	12282	0.0245	NEUTRAL	NA	285	Too-Many
TCGA.AG.3909.01A	1	156389911	156498250	15	-0.0541	NEUTRAL	NA	3	"C1orf61,IQGAP3,MEF2D"
TCGA.AA.A02K.01A	1	156390063	156520022	30	-0.1486	NEUTRAL	NA	3	"C1orf61,IQGAP3,MEF2D"
TCGA.A6.3808.01A	1	156399105	159002322	428	0.3577	NEUTRAL	NA	52	"APOA1BP,ARHGEF11,BCAN,C1orf61,CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,CRABP2,ETV3,ETV3L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,GPATCH4,HAPLN2,HDGF,IFI16,INSRR,IQGAP3,ISG20L2,KIRREL,LRRC71,MEF2D,MNDA,MRPL24,NES,NTRK1,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PEAR1,PRCC,PYHIN1,RRNAD1,SH2D2A,SPTA1,TTC24"
TCGA.AA.A00N.01A	1	156437343	156498250	14	0.3495	NEUTRAL	NA	2	"IQGAP3,MEF2D"
TCGA.AA.A010.01A	1	156437343	156498250	14	-0.1612	NEUTRAL	NA	2	"IQGAP3,MEF2D"
TCGA.AG.4009.01A	1	156437343	156551973	43	0.2657	NEUTRAL	NA	3	"IQGAP3,MEF2D,TTC24"
TCGA.AG.A00C.01A	1	156437793	156561547	48	-0.0976	NEUTRAL	NA	3	"IQGAP3,MEF2D,TTC24"
TCGA.AG.A01W.01A	1	156491027	156493784	5	-0.1967	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	1	156498687	156513718	14	0.0912	NEUTRAL	NA	1	IQGAP3
TCGA.AA.A010.01A	1	156498687	156521450	17	0.3726	NEUTRAL	NA	1	IQGAP3
TCGA.AA.A01Q.01A	1	156517823	156556205	21	0.1897	NEUTRAL	NA	2	"IQGAP3,TTC24"
TCGA.AA.A02K.01A	1	156521450	156786416	90	0.1378	NEUTRAL	NA	15	"APOA1BP,BCAN,CRABP2,GPATCH4,HAPLN2,HDGF,IQGAP3,ISG20L2,MRPL24,NES,NTRK1,PRCC,RRNAD1,SH2D2A,TTC24"
TCGA.AA.A010.01A	1	156523977	156542223	12	-0.2619	NEUTRAL	NA	1	IQGAP3
TCGA.AG.A01W.01A	1	156526410	156590750	13	0.2561	NEUTRAL	NA	5	"APOA1BP,GPATCH4,HAPLN2,IQGAP3,TTC24"
TCGA.CK.5914.01A	1	156530678	156561547	18	-0.019	NEUTRAL	NA	2	"IQGAP3,TTC24"
TCGA.AG.4009.01A	1	156552797	156556205	4	-0.4386	NEUTRAL	NA	1	TTC24
TCGA.AA.A00N.01A	1	156553540	156905733	142	-0.4224	NEUTRAL	NA	18	"APOA1BP,ARHGEF11,BCAN,CRABP2,GPATCH4,HAPLN2,HDGF,INSRR,ISG20L2,LRRC71,MRPL24,NES,NTRK1,PEAR1,PRCC,RRNAD1,SH2D2A,TTC24"
TCGA.AG.3909.01A	1	156554620	156556205	3	-0.0608	NEUTRAL	NA	1	TTC24
TCGA.AG.A016.01A	1	156556205	157801660	227	-0.0747	NEUTRAL	NA	26	"APOA1BP,ARHGEF11,BCAN,CD5L,CRABP2,ETV3,ETV3L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,GPATCH4,HAPLN2,HDGF,INSRR,ISG20L2,LRRC71,MRPL24,NES,NTRK1,PEAR1,PRCC,RRNAD1,SH2D2A,TTC24"
TCGA.CK.5914.01A	1	156562150	156751996	57	-0.4996	NEUTRAL	NA	11	"APOA1BP,BCAN,CRABP2,GPATCH4,HAPLN2,HDGF,ISG20L2,MRPL24,NES,PRCC,RRNAD1"
TCGA.AG.A00C.01A	1	156562150	156902617	122	0.2863	NEUTRAL	NA	16	"APOA1BP,BCAN,CRABP2,GPATCH4,HAPLN2,HDGF,INSRR,ISG20L2,LRRC71,MRPL24,NES,NTRK1,PEAR1,PRCC,RRNAD1,SH2D2A"
TCGA.AG.4009.01A	1	156568703	156643182	21	-0.3422	NEUTRAL	NA	4	"BCAN,GPATCH4,HAPLN2,NES"
TCGA.AF.3914.01A	1	156568703	156698846	33	0.1139	NEUTRAL	NA	7	"BCAN,CRABP2,GPATCH4,HAPLN2,ISG20L2,NES,RRNAD1"
TCGA.AG.3891.01A	1	156568703	165737872	984	0.0601	NEUTRAL	NA	141	Too-Many
TCGA.AG.A01W.01A	1	156591696	156592892	3	-0.1349	NEUTRAL	NA	1	HAPLN2
TCGA.AA.A010.01A	1	156593234	156698846	31	-0.1112	NEUTRAL	NA	6	"BCAN,CRABP2,HAPLN2,ISG20L2,NES,RRNAD1"
TCGA.AG.3906.01A	1	156593234	156783949	54	0.3623	NEUTRAL	NA	10	"BCAN,CRABP2,HAPLN2,HDGF,ISG20L2,MRPL24,NES,PRCC,RRNAD1,SH2D2A"
TCGA.AA.A00L.01A	1	156615792	161144735	671	-0.3866	NEUTRAL	NA	99	"ACKR1,AIM2,APCS,ARHGAP30,ARHGEF11,ATP1A2,ATP1A4,B4GALT3,BCAN,C1orf204,CADM3,CASQ1,CD1A,CD1B,CD1C,CD1D,CD1E,CD244,CD48,CD5L,CD84,CFAP45,COPA,CRABP2,CRP,DCAF8,DEDD,DUSP23,ETV3,ETV3L,F11R,FCER1A,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,FCRL6,HDGF,IFI16,IGSF8,IGSF9,INSRR,ISG20L2,ITLN1,ITLN2,KCNJ10,KCNJ9,KIRREL,KLHDC9,LRRC71,LY9,MNDA,MRPL24,NCSTN,NES,NHLH1,NIT1,NTRK1,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PEA15,PEAR1,PEX19,PFDN2,PIGM,PPOX,PRCC,PVRL4,PYHIN1,RRNAD1,SH2D2A,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,SPTA1,TAGLN2,TSTD1,UFC1,USF1,USP21,VANGL2,VSIG8"
TCGA.AG.4009.01A	1	156644959	156701756	11	0.2147	NEUTRAL	NA	4	"CRABP2,ISG20L2,NES,RRNAD1"
TCGA.AF.3914.01A	1	156701756	156721088	14	-0.3136	NEUTRAL	NA	3	"HDGF,MRPL24,RRNAD1"
TCGA.AG.4009.01A	1	156702041	156737573	13	-0.2764	NEUTRAL	NA	4	"HDGF,MRPL24,PRCC,RRNAD1"
TCGA.AA.A01Q.01A	1	156708106	156811407	23	-0.0705	NEUTRAL	NA	6	"HDGF,INSRR,MRPL24,NTRK1,PRCC,SH2D2A"
TCGA.AA.A010.01A	1	156737573	156767004	7	-0.4766	NEUTRAL	NA	1	PRCC
TCGA.AF.3914.01A	1	156737573	156834459	37	0.3057	NEUTRAL	NA	4	"INSRR,NTRK1,PRCC,SH2D2A"
TCGA.AG.4009.01A	1	156751996	159804912	357	0.0681	NEUTRAL	NA	51	"ACKR1,AIM2,APCS,ARHGEF11,C1orf204,CADM3,CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,CRP,DUSP23,ETV3,ETV3L,FCER1A,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,FCRL6,IFI16,INSRR,KIRREL,LRRC71,MNDA,NTRK1,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PEAR1,PRCC,PYHIN1,SH2D2A,SLAMF8,SPTA1"
TCGA.AG.3906.01A	1	156784779	166135195	935	0.045	NEUTRAL	NA	133	Too-Many
TCGA.CK.5914.01A	1	156785547	156905733	68	-0.3897	NEUTRAL	NA	6	"ARHGEF11,INSRR,LRRC71,NTRK1,PEAR1,SH2D2A"
TCGA.AA.A02K.01A	1	156810629	156816282	11	-0.2486	NEUTRAL	NA	2	"INSRR,NTRK1"
TCGA.AA.A02K.01A	1	156818687	160163491	435	0.0678	NEUTRAL	NA	61	"ACKR1,AIM2,APCS,ARHGEF11,ATP1A2,ATP1A4,C1orf204,CADM3,CASQ1,CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,CFAP45,CRP,DUSP23,ETV3,ETV3L,FCER1A,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,FCRL6,IFI16,IGSF8,IGSF9,INSRR,KCNJ10,KCNJ9,KIRREL,LRRC71,MNDA,NTRK1,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PEAR1,PIGM,PYHIN1,SLAMF8,SLAMF9,SPTA1,TAGLN2,VSIG8"
TCGA.AF.3914.01A	1	156841366	159804912	322	0.2874	NEUTRAL	NA	48	"ACKR1,AIM2,APCS,ARHGEF11,C1orf204,CADM3,CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,CRP,DUSP23,ETV3,ETV3L,FCER1A,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,FCRL6,IFI16,KIRREL,LRRC71,MNDA,NTRK1,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PEAR1,PYHIN1,SLAMF8,SPTA1"
TCGA.AF.4110	1	156869046	163944711	2734	0.2135	NEUTRAL	NA	121	Too-Many
TCGA.AG.A01W.01A	1	156886220	156893854	7	0.2015	NEUTRAL	NA	2	"LRRC71,PEAR1"
TCGA.AA.A01Q.01A	1	156894403	156902184	6	0.2004	NEUTRAL	NA	1	LRRC71
TCGA.AA.3967.01A	1	156896932	156902617	8	-0.4222	NEUTRAL	NA	1	LRRC71
TCGA.AA.A01Q.01A	1	156905733	156933250	27	-0.423	NEUTRAL	NA	1	ARHGEF11
TCGA.AG.A00C.01A	1	156905733	158300547	144	-0.2158	NEUTRAL	NA	14	"ARHGEF11,CD1A,CD1B,CD1C,CD1D,CD5L,ETV3,ETV3L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,KIRREL"
TCGA.AA.3967.01A	1	156905733	196654147	2557	0.0378	NEUTRAL	NA	275	Too-Many
TCGA.CK.5914.01A	1	156906576	156933250	26	0.0404	NEUTRAL	NA	1	ARHGEF11
TCGA.AG.3909.01A	1	156911615	156933250	20	0.068	NEUTRAL	NA	1	ARHGEF11
TCGA.AG.A01W.01A	1	156919739	157433255	45	0.2112	NEUTRAL	NA	3	"ARHGEF11,ETV3,ETV3L"
TCGA.AA.A00O.01A	1	156926195	249210793	5885	0.1244	NEUTRAL	NA	662	Too-Many
TCGA.AA.3939.01A	1	156927496	156939026	8	0.0336	NEUTRAL	NA	1	ARHGEF11
TCGA.AG.A02X.01A	1	156932948	158984509	204	0.3646	NEUTRAL	NA	32	"ARHGEF11,CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,ETV3,ETV3L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,IFI16,KIRREL,MNDA,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SPTA1"
TCGA.AG.3909.01A	1	157014005	157094601	6	-0.3261	NEUTRAL	NA	3	"ARHGEF11,ETV3,ETV3L"
TCGA.AA.A01Q.01A	1	157014005	157106020	9	-0.1257	NEUTRAL	NA	3	"ARHGEF11,ETV3,ETV3L"
TCGA.CK.5914.01A	1	157014005	157489446	13	-0.2851	NEUTRAL	NA	4	"ARHGEF11,ETV3,ETV3L,FCRL5"
TCGA.AA.3941	1	157090759	158328293	512	0.186	NEUTRAL	NA	13	"CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,ETV3,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,KIRREL"
TCGA.AA.3844	1	157090759	185426381	10147	-0.1173	NEUTRAL	NA	252	Too-Many
TCGA.AA.3930.01A	1	157106020	157548505	20	-0.1439	NEUTRAL	NA	3	"ETV3,FCRL4,FCRL5"
TCGA.AA.3811	1	157136540	185422026	10136	-0.0899	NEUTRAL	NA	251	Too-Many
TCGA.AA.3982	1	157233685	185426381	10097	-0.0406	NEUTRAL	NA	251	Too-Many
TCGA.AG.A01W.01A	1	157436129	157441862	4	-0.3703	NEUTRAL	NA	0	None
TCGA.AG.A00Y.01A	1	157489446	157802971	60	0.0394	NEUTRAL	NA	6	"CD5L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5"
TCGA.AA.A01K.01A	1	157490765	249210793	5846	0.1462	NEUTRAL	NA	659	Too-Many
TCGA.AA.3939.01A	1	157494016	173941597	1480	0.2756	NEUTRAL	NA	188	Too-Many
TCGA.AG.A01N.01A	1	157497370	161047206	507	0.3679	NEUTRAL	NA	75	"ACKR1,AIM2,APCS,ARHGAP30,ATP1A2,ATP1A4,C1orf204,CADM3,CASQ1,CD1A,CD1B,CD1C,CD1D,CD1E,CD244,CD48,CD5L,CD84,CFAP45,COPA,CRP,DCAF8,DUSP23,F11R,FCER1A,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,FCRL6,IFI16,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KIRREL,LY9,MNDA,NCSTN,NHLH1,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PEA15,PEX19,PIGM,PVRL4,PYHIN1,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,SPTA1,TAGLN2,TSTD1,USF1,VANGL2,VSIG8"
TCGA.AA.A010.01A	1	157504264	157776801	54	-0.0397	NEUTRAL	NA	5	"FCRL1,FCRL2,FCRL3,FCRL4,FCRL5"
TCGA.AG.A01W.01A	1	157538716	158051770	21	0.3529	NEUTRAL	NA	6	"CD5L,FCRL1,FCRL2,FCRL3,FCRL4,KIRREL"
TCGA.AA.A01C.01A	1	157551279	157773593	40	0.0063	NEUTRAL	NA	4	"FCRL1,FCRL2,FCRL3,FCRL4"
TCGA.AA.3930.01A	1	157566037	157804150	41	-0.1951	NEUTRAL	NA	5	"CD5L,FCRL1,FCRL2,FCRL3,FCRL4"
TCGA.AA.3814	1	157692984	249198691	31865	-0.0049	NEUTRAL	NA	655	Too-Many
TCGA.AA.A02H.01A	1	157776801	158326541	46	-0.1604	NEUTRAL	NA	8	"CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,FCRL1,KIRREL"
TCGA.AA.A01C.01A	1	157776801	158368327	48	-0.5103	NEUTRAL	NA	9	"CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,FCRL1,KIRREL,OR10T2"
TCGA.AG.A016.01A	1	157802971	159751912	163	-0.4235	NEUTRAL	NA	34	"ACKR1,AIM2,APCS,CADM3,CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,CRP,DUSP23,FCER1A,IFI16,KIRREL,MNDA,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SPTA1"
TCGA.AA.3930.01A	1	157805638	158064487	17	0.2812	NEUTRAL	NA	2	"CD5L,KIRREL"
TCGA.CK.5914.01A	1	157805638	158326541	44	-0.1387	NEUTRAL	NA	7	"CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,KIRREL"
TCGA.AA.A01Q.01A	1	158047733	158063382	8	-0.489	NEUTRAL	NA	1	KIRREL
TCGA.AG.3909.01A	1	158057493	158150826	10	-0.068	NEUTRAL	NA	2	"CD1D,KIRREL"
TCGA.AG.A00Y.01A	1	158059193	159778740	158	0.0831	NEUTRAL	NA	34	"ACKR1,AIM2,APCS,CADM3,CD1A,CD1B,CD1C,CD1D,CD1E,CRP,DUSP23,FCER1A,FCRL6,IFI16,KIRREL,MNDA,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SPTA1"
TCGA.AG.A01W.01A	1	158063237	158077494	7	-0.5027	NEUTRAL	NA	1	KIRREL
TCGA.AG.A01W.01A	1	158091121	158331315	54	0.0689	NEUTRAL	NA	5	"CD1A,CD1B,CD1C,CD1D,CD1E"
TCGA.AA.3930.01A	1	158150826	159141503	121	-0.1641	NEUTRAL	NA	24	"AIM2,CADM3,CD1A,CD1B,CD1C,CD1D,CD1E,IFI16,MNDA,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SPTA1"
TCGA.AG.3909.01A	1	158224402	158301097	16	0.2085	NEUTRAL	NA	3	"CD1A,CD1B,CD1C"
TCGA.AG.A025.01A	1	158259785	161087680	431	-0.1174	NEUTRAL	NA	68	"ACKR1,AIM2,APCS,ARHGAP30,ATP1A2,ATP1A4,C1orf204,CADM3,CASQ1,CD1B,CD1C,CD1E,CD244,CD48,CD84,CFAP45,COPA,CRP,DCAF8,DUSP23,F11R,FCER1A,FCRL6,IFI16,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MNDA,NCSTN,NHLH1,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PEA15,PEX19,PFDN2,PIGM,PVRL4,PYHIN1,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,SPTA1,TAGLN2,TSTD1,USF1,VANGL2,VSIG8"
TCGA.AA.A00Q.01A	1	158260882	158913528	43	-0.1623	NEUTRAL	NA	19	"CD1B,CD1C,CD1E,MNDA,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SPTA1"
TCGA.AA.3850	1	158332430	178420219	7318	-0.13025	NEUTRAL	NA	189	Too-Many
TCGA.AG.A01W.01A	1	158352194	158376008	17	-0.4783	NEUTRAL	NA	1	OR10T2
TCGA.AA.A010.01A	1	158368327	158584958	14	-0.4266	NEUTRAL	NA	9	"OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6P1,OR6Y1,SPTA1"
TCGA.AG.3909.01A	1	158368327	158609330	27	0.1924	NEUTRAL	NA	9	"OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6P1,OR6Y1,SPTA1"
TCGA.AG.A00C.01A	1	158368327	159862923	149	-0.1876	NEUTRAL	NA	32	"ACKR1,AIM2,APCS,C1orf204,CADM3,CFAP45,CRP,DUSP23,FCER1A,FCRL6,IFI16,MNDA,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SLAMF8,SPTA1,VSIG8"
TCGA.AA.A01Q.01A	1	158368327	160011145	136	0.0327	NEUTRAL	NA	37	"ACKR1,AIM2,APCS,C1orf204,CADM3,CFAP45,CRP,DUSP23,FCER1A,FCRL6,IFI16,IGSF9,KCNJ10,MNDA,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PIGM,PYHIN1,SLAMF8,SLAMF9,SPTA1,TAGLN2,VSIG8"
TCGA.AA.A01C.01A	1	158368790	158584958	13	0.1582	NEUTRAL	NA	9	"OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6P1,OR6Y1,SPTA1"
TCGA.AG.A01W.01A	1	158377626	158427117	23	-0.0292	NEUTRAL	NA	1	OR10K2
TCGA.AG.A01W.01A	1	158436207	158559799	43	0.1043	NEUTRAL	NA	5	"OR10K1,OR10R2,OR10X1,OR6P1,OR6Y1"
TCGA.AG.A01W.01A	1	158579466	158661481	24	-0.1383	NEUTRAL	NA	1	SPTA1
TCGA.AA.A00D.01A	1	158582555	158654846	10	0.1061	NEUTRAL	NA	1	SPTA1
TCGA.AA.A02H.01A	1	158587251	158588963	3	-0.2785	NEUTRAL	NA	1	SPTA1
TCGA.AA.A01C.01A	1	158587251	158596590	7	-0.3514	NEUTRAL	NA	1	SPTA1
TCGA.AA.A02H.01A	1	158589929	158597363	5	0.3299	NEUTRAL	NA	1	SPTA1
TCGA.AA.3861.01A	1	158596590	158669437	38	-0.235	NEUTRAL	NA	1	SPTA1
TCGA.AA.A01C.01A	1	158597363	158618269	14	0.3011	NEUTRAL	NA	1	SPTA1
TCGA.AA.A010.01A	1	158604311	158623032	17	-0.2948	NEUTRAL	NA	1	SPTA1
TCGA.AG.3909.01A	1	158609618	158650352	27	-0.1341	NEUTRAL	NA	1	SPTA1
TCGA.CK.5914.01A	1	158619615	158641092	13	-0.2786	NEUTRAL	NA	1	SPTA1
TCGA.AA.A02H.01A	1	158621110	158631025	7	-0.2807	NEUTRAL	NA	1	SPTA1
TCGA.AA.A01C.01A	1	158632492	158746475	20	0.0999	NEUTRAL	NA	6	"OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,SPTA1"
TCGA.AA.A010.01A	1	158636068	158686931	16	-0.5077	NEUTRAL	NA	2	"OR6K2,SPTA1"
TCGA.AG.3909.01A	1	158651269	159770296	67	0.1115	NEUTRAL	NA	19	"ACKR1,AIM2,APCS,CADM3,CRP,DUSP23,FCER1A,IFI16,MNDA,OR10J1,OR10J3,OR10J5,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,PYHIN1,SPTA1"
TCGA.CK.5914.01A	1	158654846	159684155	63	0.0287	NEUTRAL	NA	18	"ACKR1,AIM2,APCS,CADM3,CRP,FCER1A,IFI16,MNDA,OR10J1,OR10J3,OR10J5,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,PYHIN1,SPTA1"
TCGA.AA.A00D.01A	1	158669437	159023276	29	-0.4842	NEUTRAL	NA	8	"IFI16,MNDA,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,PYHIN1"
TCGA.AA.3941	1	158685035	178420219	7148	0	NEUTRAL	NA	179	Too-Many
TCGA.AA.A02H.01A	1	158811893	159175197	42	-0.1075	NEUTRAL	NA	6	"ACKR1,AIM2,CADM3,IFI16,MNDA,PYHIN1"
TCGA.AA.A01C.01A	1	158811893	161595907	463	-0.3992	NEUTRAL	NA	72	"ACKR1,ADAMTS4,AIM2,APCS,APOA2,ARHGAP30,ATP1A2,ATP1A4,B4GALT3,C1orf204,CADM3,CASQ1,CD244,CD48,CD84,CFAP126,CFAP45,COPA,CRP,DCAF8,DEDD,DUSP23,F11R,FCER1A,FCER1G,FCGR2A,FCGR2C,FCGR3A,FCGR3B,FCRL6,HSPA6,IFI16,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MNDA,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NR1I3,OR10J1,OR10J3,OR10J5,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,PYHIN1,SDHC,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,TAGLN2,TOMM40L,TSTD1,UFC1,USF1,USP21,VANGL2,VSIG8"
TCGA.AG.A01W.01A	1	158856138	158921335	8	0.1028	NEUTRAL	NA	1	PYHIN1
TCGA.AA.A00Q.01A	1	158914613	159750904	45	-0.4917	NEUTRAL	NA	12	"ACKR1,AIM2,APCS,CADM3,CRP,DUSP23,FCER1A,IFI16,OR10J1,OR10J3,OR10J5,PYHIN1"
TCGA.AG.A036.01A	1	158986276	247177374	5892	-2.00E-04	NEUTRAL	NA	577	Too-Many
TCGA.AG.A02X.01A	1	158987990	159799604	49	0.2251	NEUTRAL	NA	13	"ACKR1,AIM2,APCS,CADM3,CRP,DUSP23,FCER1A,FCRL6,IFI16,OR10J1,OR10J3,OR10J5,SLAMF8"
TCGA.A6.3808.01A	1	159021481	159751912	36	-0.0306	NEUTRAL	NA	11	"ACKR1,AIM2,APCS,CADM3,CRP,DUSP23,FCER1A,IFI16,OR10J1,OR10J3,OR10J5"
TCGA.AZ.4684.01A	1	159032394	162569006	543	0.1375	NEUTRAL	NA	81	"ACKR1,ADAMTS4,AIM2,APCS,APOA2,ARHGAP30,ATF6,ATP1A2,ATP1A4,B4GALT3,C1orf111,C1orf204,C1orf226,CADM3,CASQ1,CD244,CD48,CD84,CFAP126,CFAP45,COPA,CRP,DCAF8,DEDD,DUSP12,DUSP23,F11R,FCER1A,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRL6,FCRLA,FCRLB,HSPA6,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NOS1AP,NR1I3,OLFML2B,OR10J1,OR10J3,OR10J5,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,SDHC,SH2D1B,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,TAGLN2,TOMM40L,TSTD1,UAP1,UFC1,UHMK1,USF1,USP21,VANGL2,VSIG8"
TCGA.AG.A01W.01A	1	159067701	159257360	29	-0.0594	NEUTRAL	NA	2	"ACKR1,CADM3"
TCGA.AA.3930.01A	1	159159509	159409512	19	0.1203	NEUTRAL	NA	5	"ACKR1,CADM3,FCER1A,OR10J1,OR10J3"
TCGA.AA.3861.01A	1	159174672	161475708	421	0.0908	NEUTRAL	NA	63	"ACKR1,ADAMTS4,APCS,APOA2,ARHGAP30,ATP1A2,ATP1A4,B4GALT3,C1orf204,CASQ1,CD244,CD48,CD84,CFAP126,CFAP45,COPA,CRP,DCAF8,DEDD,DUSP23,F11R,FCER1A,FCER1G,FCGR2A,FCRL6,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NR1I3,OR10J1,OR10J3,OR10J5,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,SDHC,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,TAGLN2,TOMM40L,TSTD1,UFC1,USF1,USP21,VANGL2,VSIG8"
TCGA.AA.A010.01A	1	159272097	159557662	11	-0.2425	NEUTRAL	NA	5	"APCS,FCER1A,OR10J1,OR10J3,OR10J5"
TCGA.AA.A02H.01A	1	159272097	159779864	20	0.3416	NEUTRAL	NA	8	"APCS,CRP,DUSP23,FCER1A,FCRL6,OR10J1,OR10J3,OR10J5"
TCGA.AG.A01W.01A	1	159274117	159290729	16	0.2607	NEUTRAL	NA	2	"FCER1A,OR10J3"
TCGA.AG.A01W.01A	1	159292755	159309578	5	-0.3969	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	159310094	159412183	49	0.2656	NEUTRAL	NA	1	OR10J1
TCGA.AA.3930.01A	1	159410442	159684155	6	-0.183	NEUTRAL	NA	4	"APCS,CRP,OR10J1,OR10J5"
TCGA.AG.A01W.01A	1	159427582	159446964	16	-0.27	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	159459281	159543633	21	-0.2712	NEUTRAL	NA	1	OR10J5
TCGA.AG.A01W.01A	1	159546205	159949461	44	0.0097	NEUTRAL	NA	11	"APCS,C1orf204,CFAP45,CRP,DUSP23,FCRL6,IGSF9,SLAMF8,SLAMF9,TAGLN2,VSIG8"
TCGA.CK.5914.01A	1	159750904	159888541	39	0.3729	NEUTRAL	NA	7	"C1orf204,CFAP45,DUSP23,FCRL6,SLAMF8,TAGLN2,VSIG8"
TCGA.AA.3930.01A	1	159750904	167956691	755	0.1584	NEUTRAL	NA	101	Too-Many
TCGA.AG.A016.01A	1	159772147	160064621	67	-0.1234	NEUTRAL	NA	12	"C1orf204,CFAP45,FCRL6,IGSF8,IGSF9,KCNJ10,KCNJ9,PIGM,SLAMF8,SLAMF9,TAGLN2,VSIG8"
TCGA.AA.A02H.01A	1	159783211	160394856	180	-0.2032	NEUTRAL	NA	22	"ATP1A2,ATP1A4,C1orf204,CASQ1,CFAP45,COPA,DCAF8,FCRL6,IGSF8,IGSF9,KCNJ10,KCNJ9,NCSTN,NHLH1,PEA15,PEX19,PIGM,SLAMF8,SLAMF9,TAGLN2,VANGL2,VSIG8"
TCGA.AA.A010.01A	1	159802635	159862923	24	-0.3517	NEUTRAL	NA	4	"C1orf204,CFAP45,SLAMF8,VSIG8"
TCGA.AG.A02X.01A	1	159802635	160093004	60	-0.0581	NEUTRAL	NA	12	"ATP1A2,C1orf204,CFAP45,IGSF8,IGSF9,KCNJ10,KCNJ9,PIGM,SLAMF8,SLAMF9,TAGLN2,VSIG8"
TCGA.AA.A00D.01A	1	159804912	159828472	6	-0.2603	NEUTRAL	NA	3	"C1orf204,SLAMF8,VSIG8"
TCGA.AG.3909.01A	1	159804912	159828472	7	-0.1307	NEUTRAL	NA	3	"C1orf204,SLAMF8,VSIG8"
TCGA.AA.A00N.01A	1	159804912	160064621	60	-0.3234	NEUTRAL	NA	11	"C1orf204,CFAP45,IGSF8,IGSF9,KCNJ10,KCNJ9,PIGM,SLAMF8,SLAMF9,TAGLN2,VSIG8"
TCGA.AA.A02E.01A	1	159828472	249210793	5660	0.3489	NEUTRAL	NA	617	Too-Many
TCGA.AG.3909.01A	1	159832188	159869788	13	0.2798	NEUTRAL	NA	2	"CFAP45,VSIG8"
TCGA.AG.4009.01A	1	159842228	159856259	7	-0.1454	NEUTRAL	NA	1	CFAP45
TCGA.AF.3914.01A	1	159842228	159858102	9	-0.1604	NEUTRAL	NA	1	CFAP45
TCGA.AG.4009.01A	1	159857579	160011145	34	0.3303	NEUTRAL	NA	6	"CFAP45,IGSF9,KCNJ10,PIGM,SLAMF9,TAGLN2"
TCGA.AA.A00D.01A	1	159858102	162560061	454	-0.5045	NEUTRAL	NA	67	"ADAMTS4,APOA2,ARHGAP30,ATF6,ATP1A2,ATP1A4,B4GALT3,C1orf111,C1orf226,CASQ1,CD244,CD48,CD84,CFAP126,CFAP45,COPA,DCAF8,DEDD,DUSP12,F11R,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,HSPA6,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NOS1AP,NR1I3,OLFML2B,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,SDHC,SH2D1B,SLAMF1,SLAMF6,SLAMF7,SLAMF9,TAGLN2,TOMM40L,TSTD1,UAP1,UFC1,UHMK1,USF1,USP21,VANGL2"
TCGA.DM.A1HB	1	159858733	214042422	17769	0	NEUTRAL	NA	392	Too-Many
TCGA.AG.A00C.01A	1	159869788	160094887	44	0.1462	NEUTRAL	NA	9	"ATP1A2,CFAP45,IGSF8,IGSF9,KCNJ10,KCNJ9,PIGM,SLAMF9,TAGLN2"
TCGA.AA.A010.01A	1	159869788	160208360	101	0.267	NEUTRAL	NA	13	"ATP1A2,ATP1A4,CASQ1,CFAP45,DCAF8,IGSF8,IGSF9,KCNJ10,KCNJ9,PEA15,PIGM,SLAMF9,TAGLN2"
TCGA.CK.5914.01A	1	159889015	160068134	37	-0.2655	NEUTRAL	NA	7	"IGSF8,IGSF9,KCNJ10,KCNJ9,PIGM,SLAMF9,TAGLN2"
TCGA.AG.3909.01A	1	159913134	160064621	15	-0.392	NEUTRAL	NA	6	"IGSF8,IGSF9,KCNJ10,KCNJ9,PIGM,SLAMF9"
TCGA.AF.3914.01A	1	159921441	160011145	7	0.0456	NEUTRAL	NA	3	"KCNJ10,PIGM,SLAMF9"
TCGA.AG.A01W.01A	1	159959007	163591283	145	0.3642	NEUTRAL	NA	69	"ADAMTS4,APOA2,ARHGAP30,ATF6,ATP1A2,ATP1A4,B4GALT3,C1orf110,C1orf111,C1orf226,CASQ1,CD244,CD48,CD84,CFAP126,COPA,DCAF8,DDR2,DEDD,DUSP12,F11R,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,HSD17B7,HSPA6,IGSF8,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NOS1AP,NR1I3,NUF2,OLFML2B,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,RGS4,RGS5,SDHC,SH2D1B,SLAMF1,SLAMF6,SLAMF7,TOMM40L,TSTD1,UAP1,UFC1,UHMK1,USF1,USP21,VANGL2"
TCGA.AA.3841	1	160025409	249198691	30944	0.0468	NEUTRAL	NA	610	Too-Many
TCGA.AA.A00Q.01A	1	160064621	161029376	214	-0.4875	NEUTRAL	NA	24	"ARHGAP30,ATP1A2,ATP1A4,CASQ1,CD244,CD48,CD84,COPA,DCAF8,F11R,IGSF8,ITLN1,ITLN2,LY9,NCSTN,NHLH1,PEA15,PEX19,SLAMF1,SLAMF6,SLAMF7,TSTD1,USF1,VANGL2"
TCGA.AA.A01Q.01A	1	160085559	160104233	11	0.2153	NEUTRAL	NA	1	ATP1A2
TCGA.AG.4009.01A	1	160085559	160854548	181	0.057	NEUTRAL	NA	18	"ATP1A2,ATP1A4,CASQ1,CD244,CD48,CD84,COPA,DCAF8,ITLN1,LY9,NCSTN,NHLH1,PEA15,PEX19,SLAMF1,SLAMF6,SLAMF7,VANGL2"
TCGA.AF.3914.01A	1	160085559	179090728	1390	0.2232	NEUTRAL	NA	156	Too-Many
TCGA.AG.A02X.01A	1	160097305	160111001	11	-0.1493	NEUTRAL	NA	1	ATP1A2
TCGA.AG.A00C.01A	1	160097305	160151425	29	-0.3146	NEUTRAL	NA	2	"ATP1A2,ATP1A4"
TCGA.AA.A01Q.01A	1	160111001	160146228	17	0.2211	NEUTRAL	NA	2	"ATP1A2,ATP1A4"
TCGA.AG.A016.01A	1	160111001	160162538	23	-0.2389	NEUTRAL	NA	3	"ATP1A2,ATP1A4,CASQ1"
TCGA.AG.A02X.01A	1	160121789	160156397	20	0.2303	NEUTRAL	NA	1	ATP1A4
TCGA.AA.A01Q.01A	1	160147300	160206871	26	-0.0916	NEUTRAL	NA	4	"ATP1A4,CASQ1,DCAF8,PEA15"
TCGA.CK.5914.01A	1	160147300	160523662	103	0.0961	NEUTRAL	NA	11	"ATP1A4,CASQ1,CD84,COPA,DCAF8,NCSTN,NHLH1,PEA15,PEX19,SLAMF6,VANGL2"
TCGA.AG.A00C.01A	1	160156034	160206871	24	0.1776	NEUTRAL	NA	4	"ATP1A4,CASQ1,DCAF8,PEA15"
TCGA.AG.3909.01A	1	160156034	161007522	160	0.0439	NEUTRAL	NA	20	"ATP1A4,CASQ1,CD244,CD48,CD84,COPA,DCAF8,F11R,ITLN1,ITLN2,LY9,NCSTN,NHLH1,PEA15,PEX19,SLAMF1,SLAMF6,SLAMF7,TSTD1,VANGL2"
TCGA.AA.A00N.01A	1	160162538	160206871	22	-0.4765	NEUTRAL	NA	3	"CASQ1,DCAF8,PEA15"
TCGA.AG.A016.01A	1	160167285	160293174	46	-0.2763	NEUTRAL	NA	5	"CASQ1,COPA,DCAF8,PEA15,PEX19"
TCGA.AA.A02K.01A	1	160181287	160720065	101	0.0074	NEUTRAL	NA	12	"CD48,CD84,COPA,DCAF8,NCSTN,NHLH1,PEA15,PEX19,SLAMF1,SLAMF6,SLAMF7,VANGL2"
TCGA.AG.A02X.01A	1	160187341	161165255	219	0.2005	NEUTRAL	NA	29	"ADAMTS4,ARHGAP30,B4GALT3,CD244,CD48,CD84,COPA,DCAF8,DEDD,F11R,ITLN1,ITLN2,KLHDC9,LY9,NCSTN,NHLH1,NIT1,PEX19,PFDN2,PPOX,PVRL4,SLAMF1,SLAMF6,SLAMF7,TSTD1,UFC1,USF1,USP21,VANGL2"
TCGA.AG.A00C.01A	1	160208360	160314295	39	-0.1705	NEUTRAL	NA	4	"COPA,DCAF8,NCSTN,PEX19"
TCGA.AA.A01Q.01A	1	160208360	161008289	137	0.251	NEUTRAL	NA	17	"CD244,CD48,CD84,COPA,DCAF8,F11R,ITLN1,ITLN2,LY9,NCSTN,NHLH1,PEX19,SLAMF1,SLAMF6,SLAMF7,TSTD1,VANGL2"
TCGA.AG.A016.01A	1	160295282	160304975	4	0.2209	NEUTRAL	NA	1	COPA
TCGA.AG.A016.01A	1	160309634	160924453	94	-0.1952	NEUTRAL	NA	13	"CD244,CD48,CD84,COPA,ITLN1,ITLN2,LY9,NCSTN,NHLH1,SLAMF1,SLAMF6,SLAMF7,VANGL2"
TCGA.AA.A010.01A	1	160313457	160722842	57	0.0807	NEUTRAL	NA	8	"CD48,CD84,NCSTN,NHLH1,SLAMF1,SLAMF6,SLAMF7,VANGL2"
TCGA.AG.A00C.01A	1	160318738	160340475	15	0.2968	NEUTRAL	NA	2	"NCSTN,NHLH1"
TCGA.AG.A00C.01A	1	160385567	160851700	64	-0.1432	NEUTRAL	NA	9	"CD244,CD48,CD84,ITLN1,LY9,SLAMF1,SLAMF6,SLAMF7,VANGL2"
TCGA.AA.A02K.01A	1	160721098	160722843	3	-0.3952	NEUTRAL	NA	1	SLAMF7
TCGA.AA.A00N.01A	1	160722842	161008608	46	0.1941	NEUTRAL	NA	7	"CD244,F11R,ITLN1,ITLN2,LY9,SLAMF7,TSTD1"
TCGA.AA.A02K.01A	1	160765942	186050291	1908	0.105	NEUTRAL	NA	186	Too-Many
TCGA.CK.5914.01A	1	160765951	160970783	41	0.1684	NEUTRAL	NA	5	"CD244,F11R,ITLN1,ITLN2,LY9"
TCGA.AA.A010.01A	1	160786347	160805936	10	0.2538	NEUTRAL	NA	2	"CD244,LY9"
TCGA.AA.A02H.01A	1	160801076	161123758	74	-0.1249	NEUTRAL	NA	13	"ARHGAP30,CD244,DEDD,F11R,ITLN1,ITLN2,KLHDC9,NIT1,PFDN2,PVRL4,TSTD1,UFC1,USF1"
TCGA.AG.A00C.01A	1	160853169	161595907	162	0.2197	NEUTRAL	NA	30	"ADAMTS4,APOA2,ARHGAP30,B4GALT3,CFAP126,DEDD,F11R,FCER1G,FCGR2A,FCGR2C,FCGR3A,FCGR3B,HSPA6,ITLN1,ITLN2,KLHDC9,MPZ,NDUFS2,NIT1,NR1I3,PCP4L1,PFDN2,PPOX,PVRL4,SDHC,TOMM40L,TSTD1,UFC1,USF1,USP21"
TCGA.AG.4009.01A	1	160914888	160924122	7	-0.5065	NEUTRAL	NA	1	ITLN2
TCGA.AA.A010.01A	1	160914888	161008608	18	0.0328	NEUTRAL	NA	3	"F11R,ITLN2,TSTD1"
TCGA.AG.4009.01A	1	160924453	160970783	7	0.0087	NEUTRAL	NA	2	"F11R,ITLN2"
TCGA.AG.A016.01A	1	160990735	161012965	9	0.2923	NEUTRAL	NA	3	"F11R,TSTD1,USF1"
TCGA.AG.4009.01A	1	160990735	161021107	14	-0.3575	NEUTRAL	NA	4	"ARHGAP30,F11R,TSTD1,USF1"
TCGA.AA.A01Q.01A	1	161017455	161123758	34	-0.1706	NEUTRAL	NA	7	"ARHGAP30,DEDD,KLHDC9,NIT1,PFDN2,PVRL4,UFC1"
TCGA.AG.A016.01A	1	161017455	249210793	5485	-0.1263	NEUTRAL	NA	586	Too-Many
TCGA.AA.A010.01A	1	161018838	161029376	7	-0.106	NEUTRAL	NA	1	ARHGAP30
TCGA.AA.A00N.01A	1	161018838	161068306	18	-0.357	NEUTRAL	NA	3	"ARHGAP30,KLHDC9,PVRL4"
TCGA.CK.5914.01A	1	161018838	161068306	18	-0.3498	NEUTRAL	NA	3	"ARHGAP30,KLHDC9,PVRL4"
TCGA.AA.A00F.01A	1	161018838	161145546	60	0.2235	NEUTRAL	NA	10	"ARHGAP30,B4GALT3,DEDD,KLHDC9,NIT1,PFDN2,PPOX,PVRL4,UFC1,USP21"
TCGA.AG.4009.01A	1	161022073	162492164	209	0.0856	NEUTRAL	NA	36	"ADAMTS4,APOA2,ARHGAP30,ATF6,B4GALT3,C1orf111,C1orf226,CFAP126,DEDD,DUSP12,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,HSPA6,KLHDC9,MPZ,NDUFS2,NIT1,NOS1AP,NR1I3,OLFML2B,PCP4L1,PFDN2,PPOX,PVRL4,SDHC,SH2D1B,TOMM40L,UFC1,UHMK1,USP21"
TCGA.AG.A01N.01A	1	161049332	161185038	62	-0.2555	NEUTRAL	NA	11	"ADAMTS4,B4GALT3,DEDD,KLHDC9,NDUFS2,NIT1,PFDN2,PPOX,PVRL4,UFC1,USP21"
TCGA.AA.A00Q.01A	1	161088872	161126988	10	-0.4615	NEUTRAL	NA	3	"DEDD,NIT1,UFC1"
TCGA.AA.A010.01A	1	161126687	161192669	50	-0.1618	NEUTRAL	NA	8	"ADAMTS4,APOA2,B4GALT3,FCER1G,NDUFS2,PPOX,UFC1,USP21"
TCGA.AA.A02H.01A	1	161130394	161594278	96	-0.4056	NEUTRAL	NA	18	"ADAMTS4,APOA2,B4GALT3,CFAP126,FCER1G,FCGR2A,FCGR2C,FCGR3A,FCGR3B,HSPA6,MPZ,NDUFS2,NR1I3,PCP4L1,PPOX,SDHC,TOMM40L,USP21"
TCGA.AA.A00Q.01A	1	161144735	176175726	915	-0.4049	NEUTRAL	NA	114	Too-Many
TCGA.AA.A00L.01A	1	161145546	161284109	43	-0.1654	NEUTRAL	NA	9	"ADAMTS4,APOA2,B4GALT3,FCER1G,MPZ,NDUFS2,NR1I3,PCP4L1,TOMM40L"
TCGA.AA.A01Q.01A	1	161145546	165859394	253	0.1799	NEUTRAL	NA	42	"ADAMTS4,ALDH9A1,APOA2,ATF6,B4GALT3,C1orf110,C1orf111,C1orf226,CFAP126,DDR2,DUSP12,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,HSD17B7,HSPA6,LMX1A,LRRC52,MGST3,MPZ,NDUFS2,NOS1AP,NR1I3,NUF2,OLFML2B,PBX1,PCP4L1,RGS4,RGS5,RXRG,SDHC,SH2D1B,TMCO1,TOMM40L,UAP1,UCK2,UHMK1"
TCGA.AA.A00F.01A	1	161160891	166135195	260	-0.0781	NEUTRAL	NA	42	"ADAMTS4,ALDH9A1,APOA2,ATF6,C1orf110,C1orf111,C1orf226,CFAP126,DDR2,DUSP12,FAM78B,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,HSD17B7,HSPA6,LMX1A,LRRC52,MGST3,MPZ,NDUFS2,NOS1AP,NR1I3,NUF2,OLFML2B,PBX1,PCP4L1,RGS4,RGS5,RXRG,SDHC,SH2D1B,TMCO1,TOMM40L,UAP1,UCK2,UHMK1"
TCGA.AG.A02X.01A	1	161165920	161254078	35	-0.4402	NEUTRAL	NA	7	"ADAMTS4,APOA2,FCER1G,NDUFS2,NR1I3,PCP4L1,TOMM40L"
TCGA.CK.5914.01A	1	161167767	161719585	90	0.1047	NEUTRAL	NA	19	"ADAMTS4,APOA2,CFAP126,DUSP12,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,HSPA6,MPZ,NDUFS2,NR1I3,PCP4L1,SDHC,TOMM40L"
TCGA.AA.A00N.01A	1	161173185	161183878	8	-0.0761	NEUTRAL	NA	1	NDUFS2
TCGA.AG.A01N.01A	1	161187720	167400869	318	0.349	NEUTRAL	NA	48	"ALDH9A1,APOA2,ATF6,C1orf110,C1orf111,C1orf226,CD247,CFAP126,DDR2,DUSP12,DUSP27,FAM78B,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,GPA33,HSD17B7,HSPA6,ILDR2,LMX1A,LRRC52,MAEL,MGST3,MPZ,NOS1AP,NR1I3,NUF2,OLFML2B,PBX1,PCP4L1,POGK,POU2F1,RGS4,RGS5,RXRG,SDHC,SH2D1B,TADA1,TMCO1,TOMM40L,UAP1,UCK2,UHMK1"
TCGA.AA.A00N.01A	1	161207774	161600794	42	-0.2481	NEUTRAL	NA	10	"CFAP126,FCGR2A,FCGR2C,FCGR3A,FCGR3B,HSPA6,MPZ,NR1I3,PCP4L1,SDHC"
TCGA.AG.3909.01A	1	161207774	166818904	240	-0.0372	NEUTRAL	NA	38	"ALDH9A1,ATF6,C1orf110,C1orf111,C1orf226,CFAP126,DDR2,DUSP12,FAM78B,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,HSD17B7,HSPA6,LMX1A,LRRC52,MGST3,MPZ,NOS1AP,NR1I3,NUF2,OLFML2B,PBX1,PCP4L1,POGK,RGS4,RGS5,RXRG,SDHC,SH2D1B,TMCO1,UAP1,UCK2,UHMK1"
TCGA.AG.A02X.01A	1	161275645	180907661	1238	0.2433	NEUTRAL	NA	130	Too-Many
TCGA.AA.A00L.01A	1	161293336	161726539	50	-0.3712	NEUTRAL	NA	11	"CFAP126,DUSP12,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB,HSPA6,SDHC"
TCGA.AG.A025.01A	1	161298148	186122854	1686	0.052	NEUTRAL	NA	161	Too-Many
TCGA.AG.3883	1	161372037	181985203	7461	-0.2988	NEUTRAL	NA	131	Too-Many
TCGA.AA.A010.01A	1	161514442	161692747	27	0.0716	NEUTRAL	NA	6	"FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRLA,FCRLB"
TCGA.AA.A01V	1	161523134	177362947	5905	0.0146	NEUTRAL	NA	103	Too-Many
TCGA.F5.6465	1	161523134	249198691	30520	0.0039	NEUTRAL	NA	562	Too-Many
TCGA.AA.A02H.01A	1	161595907	185897651	1542	0.1908	NEUTRAL	NA	155	Too-Many
TCGA.AG.A00C.01A	1	161599557	162381626	68	-0.1221	NEUTRAL	NA	11	"ATF6,C1orf111,C1orf226,DUSP12,FCGR2B,FCGR3B,FCRLA,FCRLB,NOS1AP,OLFML2B,SH2D1B"
TCGA.AA.A01C.01A	1	161599557	179076806	1025	-0.1352	NEUTRAL	NA	110	Too-Many
TCGA.AA.3861.01A	1	161647059	196646579	1961	0.0609	NEUTRAL	NA	174	Too-Many
TCGA.AA.A00N.01A	1	161676953	161726539	17	-0.3277	NEUTRAL	NA	3	"DUSP12,FCRLA,FCRLB"
TCGA.CK.5914.01A	1	161736092	162467739	46	0.2888	NEUTRAL	NA	7	"ATF6,C1orf111,C1orf226,NOS1AP,OLFML2B,SH2D1B,UHMK1"
TCGA.AA.A00L.01A	1	161761171	162773999	77	-0.4865	NEUTRAL	NA	10	"ATF6,C1orf111,C1orf226,DDR2,HSD17B7,NOS1AP,OLFML2B,SH2D1B,UAP1,UHMK1"
TCGA.D5.6931	1	161943057	249198691	30294	0.0144	NEUTRAL	NA	555	Too-Many
TCGA.AG.A00Y.01A	1	162366991	183914588	1400	0.2318	NEUTRAL	NA	136	Too-Many
TCGA.AA.A010.01A	1	162482232	162492164	3	0.2354	NEUTRAL	NA	1	UHMK1
TCGA.AA.A010.01A	1	162535831	162749875	26	-0.3903	NEUTRAL	NA	2	"DDR2,UAP1"
TCGA.CK.5914.01A	1	162546550	164776741	69	0.181	NEUTRAL	NA	8	"C1orf110,DDR2,HSD17B7,NUF2,PBX1,RGS4,RGS5,UAP1"
TCGA.AG.A00C.01A	1	162551060	166135195	119	-0.1444	NEUTRAL	NA	16	"ALDH9A1,C1orf110,DDR2,FAM78B,HSD17B7,LMX1A,LRRC52,MGST3,NUF2,PBX1,RGS4,RGS5,RXRG,TMCO1,UAP1,UCK2"
TCGA.AG.4009.01A	1	162557246	166123909	117	-0.0367	NEUTRAL	NA	16	"ALDH9A1,C1orf110,DDR2,FAM78B,HSD17B7,LMX1A,LRRC52,MGST3,NUF2,PBX1,RGS4,RGS5,RXRG,TMCO1,UAP1,UCK2"
TCGA.AA.A00D.01A	1	162749875	162829201	11	-0.2553	NEUTRAL	NA	3	"C1orf110,DDR2,HSD17B7"
TCGA.AA.A010.01A	1	162769516	162829201	9	0.1277	NEUTRAL	NA	2	"C1orf110,HSD17B7"
TCGA.AA.A00L.01A	1	162782039	162829201	3	0.3493	NEUTRAL	NA	2	"C1orf110,HSD17B7"
TCGA.AA.A010.01A	1	163044093	163295794	9	0.2259	NEUTRAL	NA	3	"NUF2,RGS4,RGS5"
TCGA.AA.A00D.01A	1	163307756	164761689	11	-0.3304	NEUTRAL	NA	2	"NUF2,PBX1"
TCGA.AA.3819	1	163574727	249198691	29590	0.0109	NEUTRAL	NA	542	Too-Many
TCGA.AG.A01W.01A	1	163637077	163664532	8	-0.2795	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	163672961	166160284	156	0.2789	NEUTRAL	NA	9	"ALDH9A1,FAM78B,LMX1A,LRRC52,MGST3,PBX1,RXRG,TMCO1,UCK2"
TCGA.AF.4110	1	163947699	170795854	2931	-0.1693	NEUTRAL	NA	46	"ADCY10,ALDH9A1,ATP1B1,BLZF1,C1orf112,CCDC181,CD247,CREG1,DCAF6,DPT,DUSP27,F5,FAM78B,GORAB,GPA33,GPR161,ILDR2,KIFAP3,LMX1A,LRRC52,MAEL,METTL11B,METTL18,MGST3,MPC2,MPZL1,NME7,PBX1,POGK,POU2F1,PRRX1,RCSD1,RXRG,SCYL3,SELE,SELL,SELP,SFT2D2,SLC19A2,TADA1,TBX19,TIPRL,TMCO1,UCK2,XCL1,XCL2"
TCGA.DY.A1DC	1	164194142	169648468	2406	0.0046	NEUTRAL	NA	37	"ADCY10,ALDH9A1,ATP1B1,BLZF1,CCDC181,CD247,CREG1,DCAF6,DPT,DUSP27,F5,FAM78B,GPA33,GPR161,ILDR2,LMX1A,LRRC52,MAEL,MGST3,MPC2,MPZL1,NME7,PBX1,POGK,POU2F1,RCSD1,RXRG,SELP,SFT2D2,SLC19A2,TADA1,TBX19,TIPRL,TMCO1,UCK2,XCL1,XCL2"
TCGA.AZ.4684.01A	1	164529059	165652177	45	0.239	NEUTRAL	NA	6	"ALDH9A1,LMX1A,LRRC52,MGST3,PBX1,RXRG"
TCGA.AA.A00N.01A	1	164532410	164781190	5	-0.2453	NEUTRAL	NA	1	PBX1
TCGA.CM.5349	1	164612689	166579570	941	-0.4783	NEUTRAL	NA	9	"ALDH9A1,FAM78B,LMX1A,LRRC52,MGST3,PBX1,RXRG,TMCO1,UCK2"
TCGA.AA.A010.01A	1	164776741	165624556	31	0.0433	NEUTRAL	NA	5	"LMX1A,LRRC52,MGST3,PBX1,RXRG"
TCGA.CK.6751	1	164953656	249198691	28868	0.002	NEUTRAL	NA	541	Too-Many
TCGA.CK.5914.01A	1	165406312	166135195	39	0.1614	NEUTRAL	NA	7	"ALDH9A1,FAM78B,LRRC52,MGST3,RXRG,TMCO1,UCK2"
TCGA.AA.A00N.01A	1	165601396	165712367	20	-0.1258	NEUTRAL	NA	3	"ALDH9A1,MGST3,TMCO1"
TCGA.AA.A010.01A	1	165648628	165664441	5	-0.1649	NEUTRAL	NA	1	ALDH9A1
TCGA.AA.A00D.01A	1	165664441	165712367	3	0.1879	NEUTRAL	NA	2	"ALDH9A1,TMCO1"
TCGA.AZ.4684.01A	1	165664441	165876879	16	-0.3315	NEUTRAL	NA	3	"ALDH9A1,TMCO1,UCK2"
TCGA.AG.3594	1	165684706	249198691	28600	0.0153	NEUTRAL	NA	536	Too-Many
TCGA.AA.A01Q.01A	1	165860413	166990858	42	-0.1413	NEUTRAL	NA	6	"FAM78B,ILDR2,MAEL,POGK,TADA1,UCK2"
TCGA.AZ.4684.01A	1	166039426	166973370	31	0.2525	NEUTRAL	NA	5	"FAM78B,ILDR2,MAEL,POGK,TADA1"
TCGA.AA.3667	1	166267836	249198691	28411	0.0745	NEUTRAL	NA	533	Too-Many
TCGA.CK.4950	1	166267836	249198691	28131	-0.0141	NEUTRAL	NA	533	Too-Many
TCGA.AG.A01W.01A	1	166299452	168079782	178	0.3581	NEUTRAL	NA	15	"ADCY10,CD247,CREG1,DCAF6,DUSP27,GPA33,GPR161,ILDR2,MAEL,MPC2,MPZL1,POGK,POU2F1,RCSD1,TADA1"
TCGA.CM.5349	1	166581141	226920772	19958	0.2223	NEUTRAL	NA	370	Too-Many
TCGA.AA.A00F.01A	1	166810144	166990858	34	0.2482	NEUTRAL	NA	4	"ILDR2,MAEL,POGK,TADA1"
TCGA.AG.A00C.01A	1	166810144	166990858	34	0.2656	NEUTRAL	NA	4	"ILDR2,MAEL,POGK,TADA1"
TCGA.CK.5914.01A	1	166810144	166990858	34	-0.4998	NEUTRAL	NA	4	"ILDR2,MAEL,POGK,TADA1"
TCGA.AG.3906.01A	1	166831409	166908690	12	0.0484	NEUTRAL	NA	2	"ILDR2,TADA1"
TCGA.AG.3891.01A	1	166831409	186273878	1473	-0.1221	NEUTRAL	NA	127	Too-Many
TCGA.AA.A010.01A	1	166838636	166908690	10	-0.0541	NEUTRAL	NA	2	"ILDR2,TADA1"
TCGA.AG.3906.01A	1	166958543	167962447	103	0.0061	NEUTRAL	NA	11	"ADCY10,CD247,CREG1,DCAF6,DUSP27,GPA33,MAEL,MPC2,MPZL1,POU2F1,RCSD1"
TCGA.AG.4009.01A	1	166973370	167956691	96	0.0221	NEUTRAL	NA	11	"ADCY10,CD247,CREG1,DCAF6,DUSP27,GPA33,MAEL,MPC2,MPZL1,POU2F1,RCSD1"
TCGA.AG.3909.01A	1	167023534	167385225	30	0.0095	NEUTRAL	NA	3	"DUSP27,GPA33,POU2F1"
TCGA.CK.5914.01A	1	167023534	167385225	32	0.3088	NEUTRAL	NA	3	"DUSP27,GPA33,POU2F1"
TCGA.AG.A00C.01A	1	167023534	167757029	52	-0.147	NEUTRAL	NA	7	"CD247,CREG1,DUSP27,GPA33,MPZL1,POU2F1,RCSD1"
TCGA.AZ.4684.01A	1	167023534	167962447	97	0.0921	NEUTRAL	NA	10	"ADCY10,CD247,CREG1,DCAF6,DUSP27,GPA33,MPC2,MPZL1,POU2F1,RCSD1"
TCGA.AA.A00F.01A	1	167023534	169838021	268	-0.0651	NEUTRAL	NA	29	"ADCY10,ATP1B1,BLZF1,C1orf112,CCDC181,CD247,CREG1,DCAF6,DPT,DUSP27,F5,GPA33,GPR161,METTL18,MPC2,MPZL1,NME7,POU2F1,RCSD1,SCYL3,SELE,SELL,SELP,SFT2D2,SLC19A2,TBX19,TIPRL,XCL1,XCL2"
TCGA.AA.A00N.01A	1	167082893	167097147	6	-0.1913	NEUTRAL	NA	1	DUSP27
TCGA.AG.A01N.01A	1	167402182	168281959	100	0.029	NEUTRAL	NA	11	"ADCY10,CD247,CREG1,DCAF6,GPR161,MPC2,MPZL1,RCSD1,SFT2D2,TBX19,TIPRL"
TCGA.AA.A01Q.01A	1	167403189	167806423	32	-0.038	NEUTRAL	NA	5	"ADCY10,CD247,CREG1,MPZL1,RCSD1"
TCGA.AA.A00N.01A	1	167599563	167757029	13	0.3691	NEUTRAL	NA	2	"MPZL1,RCSD1"
TCGA.AA.3655	1	167619981	249198691	27791	0.0024	NEUTRAL	NA	524	Too-Many
TCGA.AG.3909.01A	1	167653087	167757029	11	0.2226	NEUTRAL	NA	2	"MPZL1,RCSD1"
TCGA.AG.3909.01A	1	167802173	167805495	3	-0.3714	NEUTRAL	NA	1	ADCY10
TCGA.AG.3909.01A	1	167806423	167873077	19	0.1399	NEUTRAL	NA	1	ADCY10
TCGA.AG.A00C.01A	1	167806423	168013809	37	-0.0415	NEUTRAL	NA	3	"ADCY10,DCAF6,MPC2"
TCGA.AA.A01Q.01A	1	167814773	167962447	31	0.2851	NEUTRAL	NA	3	"ADCY10,DCAF6,MPC2"
TCGA.CK.5914.01A	1	167814773	167971700	32	0.0544	NEUTRAL	NA	3	"ADCY10,DCAF6,MPC2"
TCGA.AG.3909.01A	1	167874183	167962447	11	-0.2893	NEUTRAL	NA	3	"ADCY10,DCAF6,MPC2"
TCGA.AA.A00N.01A	1	167887491	167935847	8	-0.4226	NEUTRAL	NA	2	"DCAF6,MPC2"
TCGA.AG.A023.01A	1	167893659	225155135	3546	0.3618	NEUTRAL	NA	342	Too-Many
TCGA.AA.3930.01A	1	167960410	168032827	13	-0.4774	NEUTRAL	NA	1	DCAF6
TCGA.AG.4009.01A	1	167960410	168035581	13	-0.3376	NEUTRAL	NA	1	DCAF6
TCGA.AA.A01Q.01A	1	167971700	168211667	33	-0.057	NEUTRAL	NA	4	"DCAF6,GPR161,SFT2D2,TIPRL"
TCGA.CK.5914.01A	1	167973059	168269591	40	-0.4567	NEUTRAL	NA	5	"DCAF6,GPR161,SFT2D2,TBX19,TIPRL"
TCGA.AA.A010.01A	1	167984972	169819370	171	-0.0491	NEUTRAL	NA	19	"ATP1B1,BLZF1,C1orf112,CCDC181,DCAF6,DPT,F5,GPR161,METTL18,NME7,SELE,SELL,SELP,SFT2D2,SLC19A2,TBX19,TIPRL,XCL1,XCL2"
TCGA.AG.3906.01A	1	168007562	168032827	5	-0.1929	NEUTRAL	NA	1	DCAF6
TCGA.AZ.4684.01A	1	168020051	169101943	54	0.1322	NEUTRAL	NA	10	"ATP1B1,DCAF6,DPT,GPR161,NME7,SFT2D2,TBX19,TIPRL,XCL1,XCL2"
TCGA.AA.3930.01A	1	168034806	169812765	160	0.0133	NEUTRAL	NA	19	"ATP1B1,BLZF1,C1orf112,CCDC181,DCAF6,DPT,F5,GPR161,METTL18,NME7,SELE,SELL,SELP,SFT2D2,SLC19A2,TBX19,TIPRL,XCL1,XCL2"
TCGA.AG.4009.01A	1	168037549	168168091	13	-0.0012	NEUTRAL	NA	3	"DCAF6,GPR161,TIPRL"
TCGA.AG.A00C.01A	1	168054738	168148269	6	-0.2639	NEUTRAL	NA	2	"GPR161,TIPRL"
TCGA.AG.3906.01A	1	168056792	172526734	336	-0.0265	NEUTRAL	NA	36	"ATP1B1,BLZF1,C1orf105,C1orf112,CCDC181,DNM3,DPT,F5,FMO1,FMO2,FMO3,FMO4,GORAB,GPR161,KIFAP3,METTL11B,METTL13,METTL18,MROH9,MYOC,NME7,PIGC,PRRC2C,PRRX1,SCYL3,SELE,SELL,SELP,SFT2D2,SLC19A2,SUCO,TBX19,TIPRL,VAMP4,XCL1,XCL2"
TCGA.AG.A01W.01A	1	168098372	168111696	7	0.1184	NEUTRAL	NA	1	GPR161
TCGA.AG.3909.01A	1	168200734	168211667	6	-0.5127	NEUTRAL	NA	1	SFT2D2
TCGA.AG.4009.01A	1	168211667	168698067	21	0.0751	NEUTRAL	NA	5	"DPT,SFT2D2,TBX19,XCL1,XCL2"
TCGA.AG.3909.01A	1	168215884	168344712	10	0.069	NEUTRAL	NA	1	TBX19
TCGA.AG.A00C.01A	1	168250310	172502280	315	-0.1748	NEUTRAL	NA	33	"ATP1B1,BLZF1,C1orf105,C1orf112,CCDC181,DNM3,DPT,F5,FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,METTL13,METTL18,MROH9,MYOC,NME7,PIGC,PRRC2C,PRRX1,SCYL3,SELE,SELL,SELP,SLC19A2,SUCO,TBX19,VAMP4,XCL1,XCL2"
TCGA.AG.A01J.01A	1	168277938	177899633	579	0.1797	NEUTRAL	NA	58	"ANKRD45,ASTN1,ATP1B1,BLZF1,BRINP2,C1orf105,C1orf112,CACYBP,CCDC181,CENPL,DARS2,DNM3,DPT,F5,FASLG,FMO1,FMO2,FMO3,FMO4,GORAB,GPR52,KIAA0040,KIFAP3,KLHL20,LOC730159,METTL11B,METTL13,METTL18,MROH9,MRPS14,MYOC,NME7,PAPPA2,PIGC,PRDX6,PRRC2C,PRRX1,RABGAP1L,RC3H1,RFWD2,SCYL3,SEC16B,SELE,SELL,SELP,SERPINC1,SLC19A2,SLC9C2,SUCO,TBX19,TNFSF18,TNFSF4,TNN,TNR,VAMP4,XCL1,XCL2,ZBTB37"
TCGA.AG.4021	1	168989552	192947350	7453	0.0389	NEUTRAL	NA	119	Too-Many
TCGA.AA.A00N.01A	1	169076020	169101943	8	-0.4824	NEUTRAL	NA	2	"ATP1B1,NME7"
TCGA.AG.4009.01A	1	169080559	169101943	7	-0.4352	NEUTRAL	NA	2	"ATP1B1,NME7"
TCGA.AG.3909.01A	1	169080559	169394007	29	-0.1345	NEUTRAL	NA	4	"ATP1B1,BLZF1,CCDC181,NME7"
TCGA.CK.5914.01A	1	169080559	169394007	29	-0.0417	NEUTRAL	NA	4	"ATP1B1,BLZF1,CCDC181,NME7"
TCGA.AA.A01Q.01A	1	169080559	172526370	255	0.1319	NEUTRAL	NA	29	"ATP1B1,BLZF1,C1orf105,C1orf112,CCDC181,DNM3,F5,FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,METTL13,METTL18,MROH9,MYOC,NME7,PIGC,PRRC2C,PRRX1,SCYL3,SELE,SELL,SELP,SLC19A2,SUCO,VAMP4"
TCGA.A6.2678	1	169110839	181770536	4025	0.0116	NEUTRAL	NA	77	"ABL2,ACBD6,ANGPTL1,ANKRD45,ASTN1,AXDND1,BLZF1,BRINP2,C1orf105,C1orf112,CACNA1E,CACYBP,CCDC181,CENPL,CEP350,DARS2,DNM3,F5,FAM163A,FAM20B,FASLG,FMO1,FMO2,FMO3,FMO4,GORAB,GPR52,IER5,KIAA0040,KIAA1614,KIFAP3,KLHL20,LHX4,LOC730159,METTL11B,METTL13,METTL18,MR1,MROH9,MRPS14,MYOC,NME7,NPHS2,PAPPA2,PIGC,PRDX6,PRRC2C,PRRX1,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,SCYL3,SEC16B,SELE,SELL,SELP,SERPINC1,SLC19A2,SLC9C2,SOAT1,STX6,SUCO,TDRD5,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,VAMP4,XPR1,ZBTB37"
TCGA.AG.4009.01A	1	169138637	169812765	107	-0.0444	NEUTRAL	NA	10	"BLZF1,C1orf112,CCDC181,F5,METTL18,NME7,SELE,SELL,SELP,SLC19A2"
TCGA.AA.A00N.01A	1	169435078	169495087	14	-0.2063	NEUTRAL	NA	2	"F5,SLC19A2"
TCGA.AG.3909.01A	1	169483504	169528354	22	-0.0182	NEUTRAL	NA	1	F5
TCGA.CK.5914.01A	1	169511041	169599215	29	0.3766	NEUTRAL	NA	2	"F5,SELP"
TCGA.AA.3980.01A	1	169528354	169599215	21	-0.4495	NEUTRAL	NA	2	"F5,SELP"
TCGA.AG.3909.01A	1	169529745	169701756	39	0.3148	NEUTRAL	NA	4	"F5,SELE,SELL,SELP"
TCGA.AA.3980.01A	1	169660843	186158662	1291	0.1356	NEUTRAL	NA	99	"ABL2,ACBD6,ANGPTL1,ANKRD45,APOBEC4,ARPC5,ASTN1,AXDND1,BRINP2,C1orf105,C1orf112,C1orf21,CACNA1E,CACYBP,CENPL,CEP350,COLGALT2,DARS2,DHX9,DNM3,EDEM3,FAM129A,FAM163A,FAM20B,FASLG,FMO1,FMO2,FMO3,FMO4,GLUL,GORAB,GPR52,HMCN1,IER5,IVNS1ABP,KIAA0040,KIAA1614,KIFAP3,KLHL20,LAMC1,LAMC2,LHX4,LOC730159,METTL11B,METTL13,METTL18,MR1,MROH9,MRPS14,MYOC,NCF2,NMNAT2,NPHS2,NPL,PAPPA2,PIGC,PRDX6,PRRC2C,PRRX1,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SCYL3,SEC16B,SELE,SELL,SERPINC1,SHCBP1L,SLC9C2,SMG7,SOAT1,STX6,SUCO,SWT1,TDRD5,TEDDM1,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,TRMT1L,TSEN15,VAMP4,XPR1,ZBTB37,ZNF648"
TCGA.DY.A1DC	1	169667354	170403330	318	0.0179	NEUTRAL	NA	7	"C1orf112,KIFAP3,METTL11B,METTL18,SCYL3,SELE,SELL"
TCGA.AG.3909.01A	1	169702649	169839345	33	-0.0882	NEUTRAL	NA	4	"C1orf112,METTL18,SCYL3,SELE"
TCGA.CK.5914.01A	1	169796153	169838021	22	0.33	NEUTRAL	NA	2	"C1orf112,SCYL3"
TCGA.AG.4009.01A	1	169816784	169857810	18	-0.3547	NEUTRAL	NA	2	"C1orf112,SCYL3"
TCGA.AA.3930.01A	1	169831703	170705142	43	-0.1578	NEUTRAL	NA	5	"GORAB,KIFAP3,METTL11B,PRRX1,SCYL3"
TCGA.AA.A00F.01A	1	169839345	169890765	6	0.2226	NEUTRAL	NA	2	"KIFAP3,SCYL3"
TCGA.AG.4009.01A	1	169890765	171621108	114	-0.0737	NEUTRAL	NA	11	"FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,MROH9,MYOC,PRRC2C,PRRX1"
TCGA.AA.A010.01A	1	169923101	170024409	18	-0.1467	NEUTRAL	NA	1	KIFAP3
TCGA.AG.3909.01A	1	169923101	171621108	115	0.1805	NEUTRAL	NA	11	"FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,MROH9,MYOC,PRRC2C,PRRX1"
TCGA.CK.5914.01A	1	169923101	171688236	134	0.2889	NEUTRAL	NA	12	"FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,MROH9,MYOC,PRRC2C,PRRX1,VAMP4"
TCGA.AA.A00F.01A	1	169923101	172520610	126	-0.1294	NEUTRAL	NA	17	"C1orf105,DNM3,FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,METTL13,MROH9,MYOC,PIGC,PRRC2C,PRRX1,SUCO,VAMP4"
TCGA.CK.4948.01B	1	169930178	170008302	15	0.3599	NEUTRAL	NA	1	KIFAP3
TCGA.AA.3949	1	169937417	249198691	26793	0.0073	NEUTRAL	NA	500	Too-Many
TCGA.DM.A28M.01A	1	170007394	172526734	172	0.2989	NEUTRAL	NA	17	"C1orf105,DNM3,FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,METTL13,MROH9,MYOC,PIGC,PRRC2C,PRRX1,SUCO,VAMP4"
TCGA.CK.4948.01B	1	170015806	172062784	142	0.0434	NEUTRAL	NA	14	"DNM3,FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,METTL13,MROH9,MYOC,PRRC2C,PRRX1,VAMP4"
TCGA.DY.A1DC	1	170413956	170842471	108	0.011	NEUTRAL	NA	2	"GORAB,PRRX1"
TCGA.AF.4110	1	170796447	187233994	5106	0.2192	NEUTRAL	NA	97	"ABL2,ACBD6,ANGPTL1,ANKRD45,APOBEC4,ARPC5,ASTN1,AXDND1,BRINP2,C1orf105,C1orf21,C1orf27,CACNA1E,CACYBP,CENPL,CEP350,COLGALT2,DARS2,DHX9,DNM3,EDEM3,FAM129A,FAM163A,FAM20B,FASLG,FMO1,FMO2,FMO3,FMO4,GLUL,GPR52,HMCN1,IER5,IVNS1ABP,KIAA0040,KIAA1614,KLHL20,LAMC1,LAMC2,LHX4,LOC730159,METTL13,MR1,MROH9,MRPS14,MYOC,NCF2,NMNAT2,NPHS2,NPL,OCLM,PAPPA2,PDC,PIGC,PLA2G4A,PRDX6,PRG4,PRRC2C,PTGS2,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SEC16B,SERPINC1,SHCBP1L,SLC9C2,SMG7,SOAT1,STX6,SUCO,SWT1,TDRD5,TEDDM1,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,TPR,TRMT1L,TSEN15,VAMP4,XPR1,ZBTB37,ZNF648"
TCGA.DY.A1DC	1	170858533	187650979	5220	0.0022	NEUTRAL	NA	97	"ABL2,ACBD6,ANGPTL1,ANKRD45,APOBEC4,ARPC5,ASTN1,AXDND1,BRINP2,C1orf105,C1orf21,C1orf27,CACNA1E,CACYBP,CENPL,CEP350,COLGALT2,DARS2,DHX9,DNM3,EDEM3,FAM129A,FAM163A,FAM20B,FASLG,FMO1,FMO2,FMO3,FMO4,GLUL,GPR52,HMCN1,IER5,IVNS1ABP,KIAA0040,KIAA1614,KLHL20,LAMC1,LAMC2,LHX4,LOC730159,METTL13,MR1,MROH9,MRPS14,MYOC,NCF2,NMNAT2,NPHS2,NPL,OCLM,PAPPA2,PDC,PIGC,PLA2G4A,PRDX6,PRG4,PRRC2C,PTGS2,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SEC16B,SERPINC1,SHCBP1L,SLC9C2,SMG7,SOAT1,STX6,SUCO,SWT1,TDRD5,TEDDM1,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,TPR,TRMT1L,TSEN15,VAMP4,XPR1,ZBTB37,ZNF648"
TCGA.AG.A01W.01A	1	170894917	172046877	63	0.3312	NEUTRAL	NA	10	"DNM3,FMO1,FMO2,FMO3,FMO4,METTL13,MROH9,MYOC,PRRC2C,VAMP4"
TCGA.AA.3930.01A	1	170914609	170940841	7	0.3104	NEUTRAL	NA	1	MROH9
TCGA.AA.A010.01A	1	170940841	172502280	141	0.031	NEUTRAL	NA	13	"C1orf105,DNM3,FMO1,FMO2,FMO3,FMO4,METTL13,MROH9,MYOC,PIGC,PRRC2C,SUCO,VAMP4"
TCGA.AA.3930.01A	1	170952545	171310604	53	0.0034	NEUTRAL	NA	5	"FMO1,FMO2,FMO3,FMO4,MROH9"
TCGA.AA.3930.01A	1	171481187	171553511	29	-0.2645	NEUTRAL	NA	1	PRRC2C
TCGA.AA.3930.01A	1	171556125	172538131	65	-0.0025	NEUTRAL	NA	8	"C1orf105,DNM3,METTL13,MYOC,PIGC,PRRC2C,SUCO,VAMP4"
TCGA.AG.4009.01A	1	171688236	172524958	46	-0.1111	NEUTRAL	NA	6	"C1orf105,DNM3,METTL13,PIGC,SUCO,VAMP4"
TCGA.AG.3909.01A	1	171754972	172437547	37	0.0155	NEUTRAL	NA	4	"C1orf105,DNM3,METTL13,PIGC"
TCGA.AG.A01W.01A	1	172060940	172208221	40	0.0117	NEUTRAL	NA	1	DNM3
TCGA.CK.4948.01B	1	172292413	198687205	1459	0.0349	NEUTRAL	NA	116	Too-Many
TCGA.EI.6508	1	172342198	189250592	5196	0.011	NEUTRAL	NA	88	"ABL2,ACBD6,ANGPTL1,ANKRD45,APOBEC4,ARPC5,ASTN1,AXDND1,BRINP2,C1orf105,C1orf21,C1orf27,CACNA1E,CACYBP,CENPL,CEP350,COLGALT2,DARS2,DHX9,DNM3,EDEM3,FAM129A,FAM163A,FAM20B,FASLG,GLUL,GPR52,HMCN1,IER5,IVNS1ABP,KIAA0040,KIAA1614,KLHL20,LAMC1,LAMC2,LHX4,LOC730159,MR1,MRPS14,NCF2,NMNAT2,NPHS2,NPL,OCLM,PAPPA2,PDC,PIGC,PLA2G4A,PRDX6,PRG4,PTGS2,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SEC16B,SERPINC1,SHCBP1L,SLC9C2,SMG7,SOAT1,STX6,SUCO,SWT1,TDRD5,TEDDM1,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,TPR,TRMT1L,TSEN15,XPR1,ZBTB37,ZNF648"
TCGA.AH.6549.01A	1	172357661	173685098	86	-0.3841	NEUTRAL	NA	12	"ANKRD45,C1orf105,DNM3,FASLG,KLHL20,LOC730159,PIGC,PRDX6,SLC9C2,SUCO,TNFSF18,TNFSF4"
TCGA.CK.5914.01A	1	172389950	172526734	17	-0.3268	NEUTRAL	NA	3	"C1orf105,PIGC,SUCO"
TCGA.EI.6512	1	172510147	249198691	25925	0.0065	NEUTRAL	NA	484	Too-Many
TCGA.AG.3611.01A	1	172520610	172526734	5	-0.1043	NEUTRAL	NA	1	SUCO
TCGA.AG.A00C.01A	1	172520610	172557882	16	0.3163	NEUTRAL	NA	1	SUCO
TCGA.AA.A00F.01A	1	172522383	172560076	16	0.3345	NEUTRAL	NA	1	SUCO
TCGA.AA.A01Q.01A	1	172526734	172548278	9	-0.446	NEUTRAL	NA	1	SUCO
TCGA.AG.3611.01A	1	172538131	179102387	331	0.3665	NEUTRAL	NA	33	"ABL2,ANGPTL1,ANKRD45,ASTN1,BRINP2,CACYBP,CENPL,DARS2,FAM20B,FASLG,GPR52,KIAA0040,KLHL20,LOC730159,MRPS14,PAPPA2,PRDX6,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,SEC16B,SERPINC1,SLC9C2,SUCO,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR3A,ZBTB37"
TCGA.AA.3930.01A	1	172539150	172578905	16	-0.2939	NEUTRAL	NA	1	SUCO
TCGA.AG.3906.01A	1	172554091	173176131	20	-0.0203	NEUTRAL	NA	4	"FASLG,SUCO,TNFSF18,TNFSF4"
TCGA.CK.5914.01A	1	172554091	173780233	73	-0.0267	NEUTRAL	NA	10	"ANKRD45,CENPL,FASLG,KLHL20,LOC730159,PRDX6,SLC9C2,SUCO,TNFSF18,TNFSF4"
TCGA.AG.A01L.01A	1	172554091	173939644	108	-0.128	NEUTRAL	NA	14	"ANKRD45,CENPL,DARS2,FASLG,KLHL20,LOC730159,PRDX6,RC3H1,SERPINC1,SLC9C2,SUCO,TNFSF18,TNFSF4,ZBTB37"
TCGA.AA.A01Q.01A	1	172554091	178442161	267	0.1784	NEUTRAL	NA	27	"ANKRD45,ASTN1,BRINP2,CACYBP,CENPL,DARS2,FASLG,GPR52,KIAA0040,KLHL20,LOC730159,MRPS14,PAPPA2,PRDX6,RABGAP1L,RASAL2,RC3H1,RFWD2,SEC16B,SERPINC1,SLC9C2,SUCO,TNFSF18,TNFSF4,TNN,TNR,ZBTB37"
TCGA.DM.A28M.01A	1	172554091	182841440	688	0.2072	NEUTRAL	NA	59	"ABL2,ACBD6,ANGPTL1,ANKRD45,ASTN1,AXDND1,BRINP2,CACNA1E,CACYBP,CENPL,CEP350,DARS2,DHX9,FAM163A,FAM20B,FASLG,GLUL,GPR52,IER5,KIAA0040,KIAA1614,KLHL20,LHX4,LOC730159,MR1,MRPS14,NPHS2,NPL,PAPPA2,PRDX6,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,RGS16,RGS8,RGSL1,RNASEL,SEC16B,SERPINC1,SLC9C2,SOAT1,STX6,SUCO,TDRD5,TEDDM1,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,XPR1,ZBTB37,ZNF648"
TCGA.AG.3909.01A	1	172557882	174957737	138	-0.0834	NEUTRAL	NA	16	"ANKRD45,CENPL,DARS2,FASLG,GPR52,KLHL20,LOC730159,PRDX6,RABGAP1L,RC3H1,SERPINC1,SLC9C2,SUCO,TNFSF18,TNFSF4,ZBTB37"
TCGA.AG.A00C.01A	1	172560076	173822448	83	-0.076	NEUTRAL	NA	11	"ANKRD45,CENPL,DARS2,FASLG,KLHL20,LOC730159,PRDX6,SLC9C2,SUCO,TNFSF18,TNFSF4"
TCGA.AA.A010.01A	1	172569172	172578905	5	-8.00E-04	NEUTRAL	NA	1	SUCO
TCGA.AA.A00F.01A	1	172569172	173446484	16	-0.1963	NEUTRAL	NA	4	"FASLG,SUCO,TNFSF18,TNFSF4"
TCGA.AG.4009.01A	1	172569172	178885389	333	-0.0986	NEUTRAL	NA	30	"ANGPTL1,ANKRD45,ASTN1,BRINP2,CACYBP,CENPL,DARS2,FASLG,GPR52,KIAA0040,KLHL20,LOC730159,MRPS14,PAPPA2,PRDX6,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,SEC16B,SERPINC1,SLC9C2,SUCO,TEX35,TNFSF18,TNFSF4,TNN,TNR,ZBTB37"
TCGA.AA.3930.01A	1	172628300	173939644	102	0.0891	NEUTRAL	NA	13	"ANKRD45,CENPL,DARS2,FASLG,KLHL20,LOC730159,PRDX6,RC3H1,SERPINC1,SLC9C2,TNFSF18,TNFSF4,ZBTB37"
TCGA.AZ.4684.01A	1	172628300	178745839	322	0.2829	NEUTRAL	NA	28	"ANKRD45,ASTN1,BRINP2,CACYBP,CENPL,DARS2,FASLG,GPR52,KIAA0040,KLHL20,LOC730159,MRPS14,PAPPA2,PRDX6,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,SEC16B,SERPINC1,SLC9C2,TEX35,TNFSF18,TNFSF4,TNN,TNR,ZBTB37"
TCGA.AG.A01W.01A	1	173371554	173573238	10	-0.2443	NEUTRAL	NA	2	"PRDX6,SLC9C2"
TCGA.AA.A00F.01A	1	173450435	173470163	5	0.2713	NEUTRAL	NA	2	"PRDX6,SLC9C2"
TCGA.AG.3906.01A	1	173470163	173545751	21	0.0968	NEUTRAL	NA	1	SLC9C2
TCGA.AA.A00F.01A	1	173472344	173550959	21	-0.1733	NEUTRAL	NA	1	SLC9C2
TCGA.AA.A010.01A	1	173475948	173628212	29	-0.2361	NEUTRAL	NA	3	"ANKRD45,LOC730159,SLC9C2"
TCGA.AA.A00F.01A	1	173552598	173596162	8	0.2976	NEUTRAL	NA	2	"ANKRD45,SLC9C2"
TCGA.AG.A01W.01A	1	173590119	178153163	282	0.337	NEUTRAL	NA	21	"ANKRD45,ASTN1,BRINP2,CACYBP,CENPL,DARS2,GPR52,KIAA0040,KLHL20,LOC730159,MRPS14,PAPPA2,RABGAP1L,RASAL2,RC3H1,RFWD2,SEC16B,SERPINC1,TNN,TNR,ZBTB37"
TCGA.AG.3906.01A	1	173596162	178885389	286	-0.0468	NEUTRAL	NA	24	"ANGPTL1,ANKRD45,ASTN1,BRINP2,CACYBP,CENPL,DARS2,GPR52,KIAA0040,KLHL20,LOC730159,MRPS14,PAPPA2,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,SEC16B,SERPINC1,TEX35,TNN,TNR,ZBTB37"
TCGA.AA.A00F.01A	1	173615934	173806071	25	-0.1083	NEUTRAL	NA	4	"ANKRD45,CENPL,DARS2,KLHL20"
TCGA.AH.6549.01A	1	173702825	224927013	3384	0.0974	NEUTRAL	NA	296	Too-Many
TCGA.AA.A00F.01A	1	173807266	173842583	11	0.2326	NEUTRAL	NA	2	"DARS2,ZBTB37"
TCGA.CK.5914.01A	1	173854725	175067421	74	-0.1222	NEUTRAL	NA	8	"CACYBP,GPR52,MRPS14,RABGAP1L,RC3H1,SERPINC1,TNN,ZBTB37"
TCGA.AA.A00F.01A	1	173854725	183559242	573	-0.0806	NEUTRAL	NA	54	"ABL2,ACBD6,ANGPTL1,ASTN1,AXDND1,BRINP2,CACNA1E,CACYBP,CEP350,DHX9,FAM163A,FAM20B,GLUL,GPR52,IER5,KIAA0040,KIAA1614,LAMC1,LAMC2,LHX4,MR1,MRPS14,NCF2,NMNAT2,NPHS2,NPL,PAPPA2,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,RGS16,RGS8,RGSL1,RNASEL,SEC16B,SERPINC1,SHCBP1L,SMG7,SOAT1,STX6,TDRD5,TEDDM1,TEX35,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,XPR1,ZBTB37,ZNF648"
TCGA.AG.A00C.01A	1	173872990	174926955	47	-0.0913	NEUTRAL	NA	4	"GPR52,RABGAP1L,RC3H1,SERPINC1"
TCGA.AG.A01L.01A	1	173941597	174274077	17	0.2307	NEUTRAL	NA	2	"RABGAP1L,RC3H1"
TCGA.AA.3930.01A	1	173941597	174417211	20	-0.4278	NEUTRAL	NA	3	"GPR52,RABGAP1L,RC3H1"
TCGA.AA.3939.01A	1	173947585	174417211	19	-0.1117	NEUTRAL	NA	3	"GPR52,RABGAP1L,RC3H1"
TCGA.AA.A010.01A	1	174188249	174976192	35	0.0504	NEUTRAL	NA	3	"CACYBP,GPR52,RABGAP1L"
TCGA.AG.A01L.01A	1	174340077	186313001	889	-0.1244	NEUTRAL	NA	66	"ABL2,ACBD6,ANGPTL1,APOBEC4,ARPC5,ASTN1,AXDND1,BRINP2,C1orf21,CACNA1E,CACYBP,CEP350,COLGALT2,DHX9,EDEM3,FAM129A,FAM163A,FAM20B,GLUL,GPR52,HMCN1,IER5,IVNS1ABP,KIAA0040,KIAA1614,LAMC1,LAMC2,LHX4,MR1,MRPS14,NCF2,NMNAT2,NPHS2,NPL,PAPPA2,PRG4,QSOX1,RABGAP1L,RALGPS2,RASAL2,RFWD2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SEC16B,SHCBP1L,SMG7,SOAT1,STX6,SWT1,TDRD5,TEDDM1,TEX35,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,TPR,TRMT1L,TSEN15,XPR1,ZNF648"
TCGA.AH.6544	1	174479054	174762321	24	-0.2503	NEUTRAL	NA	1	RABGAP1L
TCGA.AA.3930.01A	1	174516928	213134456	2732	0.0307	NEUTRAL	NA	244	Too-Many
TCGA.AA.3939.01A	1	174516928	228412108	3650	0.2867	NEUTRAL	NA	322	Too-Many
TCGA.AH.6544	1	174764607	208063504	10323	0.2477	NEUTRAL	NA	211	Too-Many
TCGA.AD.6890	1	174911405	249198691	25423	-0.3019	NEUTRAL	NA	469	Too-Many
TCGA.AG.A00C.01A	1	174957737	175097146	22	0.1838	NEUTRAL	NA	4	"CACYBP,MRPS14,RABGAP1L,TNN"
TCGA.AA.A00D.01A	1	174969243	175092484	20	-0.1274	NEUTRAL	NA	3	"CACYBP,MRPS14,TNN"
TCGA.AA.A010.01A	1	175067421	176934255	91	0.0702	NEUTRAL	NA	6	"ASTN1,KIAA0040,PAPPA2,RFWD2,TNN,TNR"
TCGA.AG.A00C.01A	1	175097682	178433364	142	-0.2705	NEUTRAL	NA	9	"ASTN1,BRINP2,KIAA0040,PAPPA2,RASAL2,RFWD2,SEC16B,TNN,TNR"
TCGA.G4.6295	1	175550125	249198691	25176	-0.3886	NEUTRAL	NA	464	Too-Many
TCGA.CK.5914.01A	1	175916256	176054863	10	-0.1	NEUTRAL	NA	1	RFWD2
TCGA.AG.3909.01A	1	175956030	176175726	18	-0.2261	NEUTRAL	NA	1	RFWD2
TCGA.AA.A00N.01A	1	175996679	176175726	15	0.2519	NEUTRAL	NA	1	RFWD2
TCGA.AA.A00D.01A	1	176175726	176826689	14	-0.0381	NEUTRAL	NA	3	"ASTN1,PAPPA2,RFWD2"
TCGA.EI.7004	1	176289824	186924213	3410	0.0203	NEUTRAL	NA	63	"ABL2,ACBD6,ANGPTL1,APOBEC4,ARPC5,ASTN1,AXDND1,BRINP2,C1orf21,C1orf27,CACNA1E,CEP350,COLGALT2,DHX9,EDEM3,FAM129A,FAM163A,FAM20B,GLUL,HMCN1,IER5,IVNS1ABP,KIAA1614,LAMC1,LAMC2,LHX4,MR1,NCF2,NMNAT2,NPHS2,NPL,OCLM,PAPPA2,PDC,PLA2G4A,PRG4,PTGS2,QSOX1,RALGPS2,RASAL2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SEC16B,SHCBP1L,SMG7,SOAT1,STX6,SWT1,TDRD5,TEDDM1,TEX35,TOR1AIP1,TOR1AIP2,TOR3A,TPR,TRMT1L,TSEN15,XPR1,ZNF648"
TCGA.AA.A00L.01A	1	176563622	176758896	11	-0.0018	NEUTRAL	NA	1	PAPPA2
TCGA.AA.A01V	1	177380427	249198691	24589	0.0101	NEUTRAL	NA	459	Too-Many
TCGA.AA.A00L.01A	1	177901597	177920993	5	-0.001	NEUTRAL	NA	1	SEC16B
TCGA.AA.A00D.01A	1	177901597	179322657	93	-0.4717	NEUTRAL	NA	9	"ABL2,ANGPTL1,FAM20B,RALGPS2,RASAL2,SEC16B,SOAT1,TEX35,TOR3A"
TCGA.AG.A01J.01A	1	177905376	183091181	400	-0.0022	NEUTRAL	NA	36	"ABL2,ACBD6,ANGPTL1,AXDND1,CACNA1E,CEP350,DHX9,FAM163A,FAM20B,GLUL,IER5,KIAA1614,LAMC1,LHX4,MR1,NPHS2,NPL,QSOX1,RALGPS2,RASAL2,RGS16,RGS8,RGSL1,RNASEL,SEC16B,SHCBP1L,SOAT1,STX6,TDRD5,TEDDM1,TEX35,TOR1AIP1,TOR1AIP2,TOR3A,XPR1,ZNF648"
TCGA.AA.A010.01A	1	177916961	178885389	68	0.1686	NEUTRAL	NA	5	"ANGPTL1,RALGPS2,RASAL2,SEC16B,TEX35"
TCGA.AG.3909.01A	1	178063579	178885389	53	-0.0512	NEUTRAL	NA	4	"ANGPTL1,RALGPS2,RASAL2,TEX35"
TCGA.AA.A00Q.01A	1	178063579	206330969	1753	-0.3956	NEUTRAL	NA	174	Too-Many
TCGA.AA.3850	1	178425131	178640596	88	0.31695	NEUTRAL	NA	2	"RASAL2,TEX35"
TCGA.AA.3941	1	178425131	185426381	2326	0.2583	NEUTRAL	NA	51	"ABL2,ACBD6,ANGPTL1,APOBEC4,ARPC5,AXDND1,C1orf21,CACNA1E,CEP350,COLGALT2,DHX9,EDEM3,FAM129A,FAM163A,FAM20B,GLUL,IER5,IVNS1ABP,KIAA1614,LAMC1,LAMC2,LHX4,MR1,NCF2,NMNAT2,NPHS2,NPL,QSOX1,RALGPS2,RASAL2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,SOAT1,STX6,SWT1,TDRD5,TEDDM1,TEX35,TOR1AIP1,TOR1AIP2,TOR3A,TRMT1L,TSEN15,XPR1,ZNF648"
TCGA.AA.A00N.01A	1	178433364	178514628	18	-0.4182	NEUTRAL	NA	2	"RASAL2,TEX35"
TCGA.AA.A00L.01A	1	178435008	178490628	11	0.0476	NEUTRAL	NA	2	"RASAL2,TEX35"
TCGA.AG.A00C.01A	1	178435008	178514628	14	0.1912	NEUTRAL	NA	2	"RASAL2,TEX35"
TCGA.CK.5914.01A	1	178436421	179544714	114	-0.1335	NEUTRAL	NA	10	"ABL2,ANGPTL1,AXDND1,FAM20B,NPHS2,RALGPS2,RASAL2,SOAT1,TEX35,TOR3A"
TCGA.AA.A01Q.01A	1	178490628	179521689	92	0.1122	NEUTRAL	NA	9	"ABL2,ANGPTL1,AXDND1,FAM20B,NPHS2,RALGPS2,SOAT1,TEX35,TOR3A"
TCGA.AA.A00L.01A	1	178491409	201845035	1195	-0.4833	NEUTRAL	NA	106	Too-Many
TCGA.AA.3850	1	178641944	178925591	61	-0.16975	NEUTRAL	NA	2	"ANGPTL1,RALGPS2"
TCGA.AG.A00C.01A	1	178745839	178875870	22	-0.1537	NEUTRAL	NA	2	"ANGPTL1,RALGPS2"
TCGA.AZ.4684.01A	1	178847984	185259764	580	0.2238	NEUTRAL	NA	47	"ABL2,ACBD6,APOBEC4,ARPC5,AXDND1,C1orf21,CACNA1E,CEP350,COLGALT2,DHX9,EDEM3,FAM129A,FAM163A,FAM20B,GLUL,IER5,KIAA1614,LAMC1,LAMC2,LHX4,MR1,NCF2,NMNAT2,NPHS2,NPL,QSOX1,RALGPS2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,SOAT1,STX6,SWT1,TDRD5,TEDDM1,TOR1AIP1,TOR1AIP2,TOR3A,TRMT1L,TSEN15,XPR1,ZNF648"
TCGA.AA.A00N.01A	1	178862991	178885389	5	0.0461	NEUTRAL	NA	1	RALGPS2
TCGA.AG.A00C.01A	1	178885389	179271783	26	0.3588	NEUTRAL	NA	5	"ABL2,FAM20B,RALGPS2,SOAT1,TOR3A"
TCGA.AY.A71X	1	179005969	249198691	24086	-0.0041	NEUTRAL	NA	454	Too-Many
TCGA.AG.3906.01A	1	179012941	179087670	19	0.2895	NEUTRAL	NA	3	"ABL2,FAM20B,TOR3A"
TCGA.AG.4009.01A	1	179033025	179086425	15	-0.1574	NEUTRAL	NA	3	"ABL2,FAM20B,TOR3A"
TCGA.AA.A010.01A	1	179041000	179354325	45	0.1339	NEUTRAL	NA	5	"ABL2,AXDND1,FAM20B,SOAT1,TOR3A"
TCGA.AG.3906.01A	1	179089268	179364186	31	-0.0452	NEUTRAL	NA	3	"ABL2,AXDND1,SOAT1"
TCGA.AF.3914.01A	1	179112021	201858525	1283	0.2149	NEUTRAL	NA	102	Too-Many
TCGA.AA.A00N.01A	1	179198337	179316683	12	0.1512	NEUTRAL	NA	2	"ABL2,SOAT1"
TCGA.AG.4009.01A	1	179271783	179363001	24	-0.0167	NEUTRAL	NA	2	"AXDND1,SOAT1"
TCGA.AG.3909.01A	1	179292504	179322657	14	-0.1152	NEUTRAL	NA	1	SOAT1
TCGA.AG.A00C.01A	1	179292504	179335596	15	0.0152	NEUTRAL	NA	2	"AXDND1,SOAT1"
TCGA.AA.A01C.01A	1	179292504	179834013	67	-0.17	NEUTRAL	NA	6	"AXDND1,FAM163A,NPHS2,SOAT1,TDRD5,TOR1AIP2"
TCGA.AA.A00D.01A	1	179335596	179414088	15	0.1351	NEUTRAL	NA	1	AXDND1
TCGA.A6.3808.01A	1	179335596	180366614	127	-0.4095	NEUTRAL	NA	10	"ACBD6,AXDND1,CEP350,FAM163A,LHX4,NPHS2,QSOX1,TDRD5,TOR1AIP1,TOR1AIP2"
TCGA.AG.A00C.01A	1	179337888	179452208	16	0.3494	NEUTRAL	NA	1	AXDND1
TCGA.AG.4009.01A	1	179399550	179503824	12	-0.0366	NEUTRAL	NA	1	AXDND1
TCGA.AA.A010.01A	1	179414088	179497413	8	0.22	NEUTRAL	NA	1	AXDND1
TCGA.AG.3906.01A	1	179414088	183111650	296	-0.0347	NEUTRAL	NA	27	"ACBD6,AXDND1,CACNA1E,CEP350,DHX9,FAM163A,GLUL,IER5,KIAA1614,LAMC1,LHX4,MR1,NPHS2,NPL,QSOX1,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,STX6,TDRD5,TEDDM1,TOR1AIP1,TOR1AIP2,XPR1,ZNF648"
TCGA.AA.A00N.01A	1	179437541	179521689	11	0.2221	NEUTRAL	NA	2	"AXDND1,NPHS2"
TCGA.AG.3909.01A	1	179437541	179544714	17	-0.0345	NEUTRAL	NA	2	"AXDND1,NPHS2"
TCGA.AA.A00D.01A	1	179437541	185116285	403	-0.5014	NEUTRAL	NA	41	"ACBD6,APOBEC4,ARPC5,AXDND1,C1orf21,CACNA1E,CEP350,COLGALT2,DHX9,EDEM3,FAM129A,FAM163A,GLUL,IER5,KIAA1614,LAMC1,LAMC2,LHX4,MR1,NCF2,NMNAT2,NPHS2,NPL,QSOX1,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,STX6,TDRD5,TEDDM1,TOR1AIP1,TOR1AIP2,TRMT1L,TSEN15,XPR1,ZNF648"
TCGA.AG.A00C.01A	1	179460656	180974383	140	-0.0911	NEUTRAL	NA	13	"ACBD6,AXDND1,CEP350,FAM163A,KIAA1614,LHX4,NPHS2,QSOX1,STX6,TDRD5,TOR1AIP1,TOR1AIP2,XPR1"
TCGA.AA.A01Q.01A	1	179523542	179587719	10	-0.1559	NEUTRAL	NA	3	"AXDND1,NPHS2,TDRD5"
TCGA.AA.A010.01A	1	179544714	182427402	200	0.2292	NEUTRAL	NA	19	"ACBD6,CACNA1E,CEP350,FAM163A,GLUL,IER5,KIAA1614,LHX4,MR1,NPHS2,QSOX1,RGSL1,STX6,TDRD5,TEDDM1,TOR1AIP1,TOR1AIP2,XPR1,ZNF648"
TCGA.CK.5914.01A	1	179587719	179873028	27	-0.3064	NEUTRAL	NA	4	"FAM163A,TDRD5,TOR1AIP1,TOR1AIP2"
TCGA.AG.3909.01A	1	179587719	180991696	125	-0.1567	NEUTRAL	NA	11	"ACBD6,CEP350,FAM163A,KIAA1614,LHX4,QSOX1,STX6,TDRD5,TOR1AIP1,TOR1AIP2,XPR1"
TCGA.AG.4009.01A	1	179587719	200818353	1024	-0.1166	NEUTRAL	NA	82	"ACBD6,APOBEC4,ARPC5,ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf21,C1orf27,C1orf53,CACNA1E,CAMSAP2,CDC73,CEP350,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,COLGALT2,CRB1,DDX59,DENND1B,DHX9,EDEM3,F13B,FAM129A,FAM163A,GLRX2,GLUL,HMCN1,IER5,IVNS1ABP,KCNT2,KIAA1614,KIF14,LAMC1,LAMC2,LHX4,LHX9,MR1,NCF2,NEK7,NMNAT2,NPL,NR5A2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,QSOX1,RGL1,RGS1,RGS13,RGS16,RGS18,RGS2,RGS21,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,STX6,SWT1,TDRD5,TEDDM1,TOR1AIP1,TOR1AIP2,TPR,TRMT1L,TROVE2,TSEN15,UCHL5,XPR1,ZBTB41,ZNF281,ZNF648"
TCGA.AA.A01Q.01A	1	179590111	180135589	67	0.2425	NEUTRAL	NA	6	"CEP350,FAM163A,QSOX1,TDRD5,TOR1AIP1,TOR1AIP2"
TCGA.AA.3850	1	179598178	179678660	17	0.15825	NEUTRAL	NA	1	TDRD5
TCGA.AA.3850	1	179690732	179881003	75	0.35285	NEUTRAL	NA	3	"FAM163A,TOR1AIP1,TOR1AIP2"
TCGA.AG.A01W.01A	1	179746191	180026164	43	0.0338	NEUTRAL	NA	4	"CEP350,FAM163A,TOR1AIP1,TOR1AIP2"
TCGA.CK.5914.01A	1	179876878	180044105	34	0.1375	NEUTRAL	NA	2	"CEP350,TOR1AIP1"
TCGA.AA.A01C.01A	1	179886539	182569417	164	-0.1834	NEUTRAL	NA	17	"ACBD6,CACNA1E,CEP350,GLUL,IER5,KIAA1614,LHX4,MR1,QSOX1,RGS16,RGSL1,RNASEL,STX6,TEDDM1,TOR1AIP1,XPR1,ZNF648"
TCGA.AA.3850	1	179887124	179897069	6	-0.46685	NEUTRAL	NA	1	TOR1AIP1
TCGA.AA.3850	1	179900111	180244733	119	0.37445	NEUTRAL	NA	3	"CEP350,LHX4,QSOX1"
TCGA.AG.A01W.01A	1	180030608	181748510	154	0.3607	NEUTRAL	NA	10	"ACBD6,CACNA1E,CEP350,IER5,KIAA1614,LHX4,MR1,QSOX1,STX6,XPR1"
TCGA.CK.5914.01A	1	180047571	180217390	24	-0.4922	NEUTRAL	NA	3	"CEP350,LHX4,QSOX1"
TCGA.AG.3612	1	180092072	235001173	18624	-0.0337	NEUTRAL	NA	340	Too-Many
TCGA.AA.A01Q.01A	1	180235477	186039707	393	0.1261	NEUTRAL	NA	36	"ACBD6,APOBEC4,ARPC5,C1orf21,CACNA1E,COLGALT2,DHX9,EDEM3,FAM129A,GLUL,HMCN1,IER5,IVNS1ABP,KIAA1614,LAMC1,LAMC2,LHX4,MR1,NCF2,NMNAT2,NPL,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,STX6,SWT1,TEDDM1,TRMT1L,TSEN15,XPR1,ZNF648"
TCGA.AA.3850	1	180249306	180862169	156	0.03435	NEUTRAL	NA	2	"ACBD6,XPR1"
TCGA.CK.5914.01A	1	180399260	180471128	4	-0.3575	NEUTRAL	NA	1	ACBD6
TCGA.A6.3808.01A	1	180461351	185703925	408	0.1415	NEUTRAL	NA	35	"ACBD6,APOBEC4,ARPC5,C1orf21,CACNA1E,COLGALT2,DHX9,EDEM3,FAM129A,GLUL,HMCN1,IER5,IVNS1ABP,KIAA1614,LAMC1,LAMC2,MR1,NCF2,NMNAT2,NPL,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,STX6,SWT1,TEDDM1,TRMT1L,TSEN15,XPR1,ZNF648"
TCGA.CK.5914.01A	1	180601272	180794254	9	0.2569	NEUTRAL	NA	1	XPR1
TCGA.4T.AA8H	1	180690419	249198691	23582	0.3538	NEUTRAL	NA	440	Too-Many
TCGA.CK.5914.01A	1	180803993	180914392	14	-0.4625	NEUTRAL	NA	2	"KIAA1614,XPR1"
TCGA.F4.6808	1	180820793	230632036	16459	-0.0673	NEUTRAL	NA	311	Too-Many
TCGA.AA.3850	1	180865554	181235008	170	0.34035	NEUTRAL	NA	4	"IER5,KIAA1614,MR1,STX6"
TCGA.A6.6141	1	180889517	180952515	36	-0.4805	NEUTRAL	NA	2	"KIAA1614,STX6"
TCGA.AG.A01N.01A	1	180945656	183195821	169	0.2621	NEUTRAL	NA	16	"CACNA1E,DHX9,GLUL,IER5,LAMC1,LAMC2,MR1,NPL,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,STX6,TEDDM1,ZNF648"
TCGA.AG.A02X.01A	1	180945656	184787735	297	0.2248	NEUTRAL	NA	27	"APOBEC4,ARPC5,C1orf21,CACNA1E,COLGALT2,DHX9,EDEM3,FAM129A,GLUL,IER5,LAMC1,LAMC2,MR1,NCF2,NMNAT2,NPL,RGL1,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,SMG7,STX6,TEDDM1,TSEN15,ZNF648"
TCGA.A6.6141	1	180956194	249198691	23492	0	NEUTRAL	NA	438	Too-Many
TCGA.CK.5914.01A	1	180971693	180991696	3	0.3652	NEUTRAL	NA	1	STX6
TCGA.AY.6196	1	181023604	182982877	759	0.0777	NEUTRAL	NA	13	"CACNA1E,DHX9,GLUL,IER5,MR1,NPL,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,TEDDM1,ZNF648"
TCGA.AA.3850	1	181259675	185426381	1421	0.08285	NEUTRAL	NA	28	"APOBEC4,ARPC5,C1orf21,CACNA1E,COLGALT2,DHX9,EDEM3,FAM129A,GLUL,IVNS1ABP,LAMC1,LAMC2,NCF2,NMNAT2,NPL,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,SWT1,TEDDM1,TRMT1L,TSEN15,ZNF648"
TCGA.AG.A00C.01A	1	181479584	181767798	48	-0.2506	NEUTRAL	NA	1	CACNA1E
TCGA.CK.5914.01A	1	181479584	182874619	134	0.0668	NEUTRAL	NA	11	"CACNA1E,DHX9,GLUL,NPL,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,TEDDM1,ZNF648"
TCGA.AG.3909.01A	1	181686222	181740386	26	0.057	NEUTRAL	NA	1	CACNA1E
TCGA.AG.3909.01A	1	181752778	182921817	80	-0.333	NEUTRAL	NA	11	"CACNA1E,DHX9,GLUL,NPL,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,TEDDM1,ZNF648"
TCGA.DY.A1H8	1	181753029	181816818	31	0.0715	NEUTRAL	NA	1	CACNA1E
TCGA.AG.A01W.01A	1	181772843	182948182	76	0.3562	NEUTRAL	NA	11	"CACNA1E,DHX9,GLUL,NPL,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,TEDDM1,ZNF648"
TCGA.A6.2678	1	181858490	238212445	19267	0.0113	NEUTRAL	NA	350	Too-Many
TCGA.AG.3883	1	181985714	185219679	1056	0.0382	NEUTRAL	NA	26	"APOBEC4,ARPC5,C1orf21,COLGALT2,DHX9,EDEM3,FAM129A,GLUL,LAMC1,LAMC2,NCF2,NMNAT2,NPL,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,SWT1,TEDDM1,TRMT1L,TSEN15,ZNF648"
TCGA.AG.A00C.01A	1	182025460	182615850	20	0.2475	NEUTRAL	NA	7	"GLUL,RGS16,RGS8,RGSL1,RNASEL,TEDDM1,ZNF648"
TCGA.AA.A00N.01A	1	182427402	182462105	7	0.0398	NEUTRAL	NA	1	RGSL1
TCGA.AA.A00N.01A	1	182509344	182641856	25	0.2956	NEUTRAL	NA	4	"RGS16,RGS8,RGSL1,RNASEL"
TCGA.AA.A010.01A	1	182517423	182554425	12	0.0739	NEUTRAL	NA	2	"RGSL1,RNASEL"
TCGA.AA.A01C.01A	1	182572313	201193768	925	-0.1268	NEUTRAL	NA	70	"APOBEC4,ARPC5,ASCL5,ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf106,C1orf21,C1orf27,C1orf53,CACNA1S,CAMSAP2,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,COLGALT2,CRB1,DDX59,DENND1B,DHX9,EDEM3,F13B,FAM129A,GLRX2,GPR25,HMCN1,IGFN1,IVNS1ABP,KCNT2,KIF14,KIF21B,LAMC1,LAMC2,LHX9,NCF2,NEK7,NMNAT2,NPL,NR5A2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGL1,RGS1,RGS13,RGS16,RGS18,RGS2,RGS21,RGS8,RNF2,SHCBP1L,SMG7,SWT1,TMEM9,TPR,TRMT1L,TROVE2,TSEN15,UCHL5,ZBTB41,ZNF281"
TCGA.AG.A00C.01A	1	182617275	182641856	6	-0.2179	NEUTRAL	NA	1	RGS8
TCGA.AG.A00C.01A	1	182763441	182829086	20	0.257	NEUTRAL	NA	2	"DHX9,NPL"
TCGA.AA.A010.01A	1	182772768	182848347	29	-0.2244	NEUTRAL	NA	2	"DHX9,NPL"
TCGA.AG.A00C.01A	1	182835576	182874619	18	-0.1102	NEUTRAL	NA	2	"DHX9,SHCBP1L"
TCGA.DM.A28M.01A	1	182847109	186326520	397	0.3092	NEUTRAL	NA	22	"APOBEC4,ARPC5,C1orf21,COLGALT2,DHX9,EDEM3,FAM129A,HMCN1,IVNS1ABP,LAMC1,LAMC2,NCF2,NMNAT2,PRG4,RGL1,RNF2,SHCBP1L,SMG7,SWT1,TPR,TRMT1L,TSEN15"
TCGA.CK.5914.01A	1	182992801	183087122	9	0.0566	NEUTRAL	NA	1	LAMC1
TCGA.AG.3909.01A	1	182992801	183176980	27	0.2065	NEUTRAL	NA	2	"LAMC1,LAMC2"
TCGA.AG.A01W.01A	1	183030698	183410089	37	0.2809	NEUTRAL	NA	3	"LAMC1,LAMC2,NMNAT2"
TCGA.AG.A00C.01A	1	183072456	202574676	1071	-0.1125	NEUTRAL	NA	85	"APOBEC4,ARL8A,ARPC5,ASCL5,ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf106,C1orf21,C1orf27,C1orf53,CACNA1S,CAMSAP2,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,COLGALT2,CRB1,CSRP1,DDX59,DENND1B,EDEM3,ELF3,F13B,FAM129A,GLRX2,GPR25,GPR37L1,HMCN1,IGFN1,IPO9,IVNS1ABP,KCNT2,KIF14,KIF21B,LAD1,LAMC1,LAMC2,LGR6,LHX9,LMOD1,NAV1,NCF2,NEK7,NMNAT2,NR5A2,OCLM,PDC,PHLDA3,PKP1,PLA2G4A,PPP1R12B,PRG4,PTGS2,PTPN7,PTPRC,RGL1,RGS1,RGS13,RGS18,RGS2,RGS21,RNF2,RNPEP,SHISA4,SMG7,SWT1,SYT2,TIMM17A,TMEM9,TNNI1,TNNT2,TPR,TRMT1L,TROVE2,TSEN15,UBE2T,UCHL5,ZBTB41,ZNF281"
TCGA.AG.A01J.01A	1	183103748	198723381	687	0.2306	NEUTRAL	NA	53	"APOBEC4,ARPC5,ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf21,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,COLGALT2,CRB1,DENND1B,EDEM3,F13B,FAM129A,GLRX2,HMCN1,IVNS1ABP,KCNT2,LAMC1,LAMC2,LHX9,NCF2,NEK7,NMNAT2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGL1,RGS1,RGS13,RGS18,RGS2,RGS21,RNF2,SMG7,SWT1,TPR,TRMT1L,TROVE2,TSEN15,UCHL5,ZBTB41"
TCGA.AG.3906.01A	1	183155426	183247625	25	0.2343	NEUTRAL	NA	2	"LAMC2,NMNAT2"
TCGA.CK.4952.01A	1	183209988	195015527	381	-0.4527	NEUTRAL	NA	35	"APOBEC4,ARPC5,B3GALT2,BRINP3,C1orf21,C1orf27,CDC73,COLGALT2,EDEM3,FAM129A,GLRX2,HMCN1,IVNS1ABP,LAMC2,NCF2,NMNAT2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,RGL1,RGS1,RGS13,RGS18,RGS2,RGS21,RNF2,SMG7,SWT1,TPR,TRMT1L,TROVE2,TSEN15,UCHL5"
TCGA.AG.3906.01A	1	183253066	186269175	274	-0.0485	NEUTRAL	NA	17	"APOBEC4,ARPC5,C1orf21,COLGALT2,EDEM3,FAM129A,HMCN1,IVNS1ABP,NCF2,NMNAT2,PRG4,RGL1,RNF2,SMG7,SWT1,TRMT1L,TSEN15"
TCGA.AG.3909.01A	1	183387269	183513451	15	-0.0033	NEUTRAL	NA	2	"NMNAT2,SMG7"
TCGA.AA.A010.01A	1	183481886	183529194	25	-0.1877	NEUTRAL	NA	2	"NCF2,SMG7"
TCGA.AG.A01N.01A	1	183536291	183602166	11	-0.1398	NEUTRAL	NA	2	"ARPC5,NCF2"
TCGA.AA.A00F.01A	1	183596607	183775477	7	0.1915	NEUTRAL	NA	3	"APOBEC4,ARPC5,RGL1"
TCGA.CK.5914.01A	1	183596607	183775477	8	-0.4505	NEUTRAL	NA	3	"APOBEC4,ARPC5,RGL1"
TCGA.AA.A010.01A	1	183616828	185987266	160	0.041	NEUTRAL	NA	12	"APOBEC4,C1orf21,COLGALT2,EDEM3,FAM129A,HMCN1,IVNS1ABP,RGL1,RNF2,SWT1,TRMT1L,TSEN15"
TCGA.AA.A00F.01A	1	183816653	184006222	28	-0.223	NEUTRAL	NA	2	"COLGALT2,RGL1"
TCGA.AG.3909.01A	1	183816653	185097740	79	0.124	NEUTRAL	NA	8	"C1orf21,COLGALT2,EDEM3,FAM129A,RGL1,RNF2,TRMT1L,TSEN15"
TCGA.AG.A00Y.01A	1	183920110	199996907	593	-0.0641	NEUTRAL	NA	46	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf21,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,COLGALT2,CRB1,DENND1B,EDEM3,F13B,FAM129A,GLRX2,HMCN1,IVNS1ABP,KCNT2,LHX9,NEK7,NR5A2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,RNF2,SWT1,TPR,TRMT1L,TROVE2,TSEN15,UCHL5,ZBTB41"
TCGA.AG.3611.01A	1	184020843	184041284	4	-0.0517	NEUTRAL	NA	1	TSEN15
TCGA.AA.A00F.01A	1	184020843	184041880	5	0.2806	NEUTRAL	NA	1	TSEN15
TCGA.A6.5661	1	184225261	199496361	4258	0.3729	NEUTRAL	NA	43	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf21,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,EDEM3,F13B,FAM129A,GLRX2,HMCN1,IVNS1ABP,KCNT2,LHX9,NEK7,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,RNF2,SWT1,TPR,TRMT1L,TROVE2,UCHL5,ZBTB41"
TCGA.AA.A00F.01A	1	184446593	185259764	77	-0.1018	NEUTRAL	NA	6	"C1orf21,EDEM3,FAM129A,RNF2,SWT1,TRMT1L"
TCGA.AG.A01W.01A	1	184545526	184561468	13	0.0902	NEUTRAL	NA	1	C1orf21
TCGA.AA.A00N.01A	1	184701944	184760083	7	-0.3183	NEUTRAL	NA	1	EDEM3
TCGA.AG.A02X.01A	1	184800930	201193768	713	0.3094	NEUTRAL	NA	53	"ASCL5,ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf106,C1orf27,C1orf53,CACNA1S,CAMSAP2,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DDX59,DENND1B,F13B,FAM129A,GLRX2,GPR25,HMCN1,IGFN1,IVNS1ABP,KCNT2,KIF14,KIF21B,LHX9,NEK7,NR5A2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,RNF2,SWT1,TMEM9,TPR,TRMT1L,TROVE2,UCHL5,ZBTB41,ZNF281"
TCGA.CK.5914.01A	1	184859225	185109077	17	0.0526	NEUTRAL	NA	3	"FAM129A,RNF2,TRMT1L"
TCGA.AA.3494	1	185110866	187130515	580	-0.3899	NEUTRAL	NA	11	"C1orf27,HMCN1,IVNS1ABP,OCLM,PDC,PLA2G4A,PRG4,PTGS2,SWT1,TPR,TRMT1L"
TCGA.AA.A00D.01A	1	185119463	185137400	6	0.2888	NEUTRAL	NA	2	"SWT1,TRMT1L"
TCGA.AG.3909.01A	1	185137400	185259764	16	-0.0975	NEUTRAL	NA	1	SWT1
TCGA.AA.A00N.01A	1	185143465	185259764	15	0.3071	NEUTRAL	NA	1	SWT1
TCGA.CK.5914.01A	1	185149476	185270516	18	0.0741	NEUTRAL	NA	2	"IVNS1ABP,SWT1"
TCGA.AG.3611.01A	1	185200662	197325951	342	0.2779	NEUTRAL	NA	32	"ASPM,B3GALT2,BRINP3,C1orf27,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,F13B,GLRX2,HMCN1,IVNS1ABP,KCNT2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,RGS1,RGS13,RGS18,RGS2,RGS21,SWT1,TPR,TROVE2,UCHL5,ZBTB41"
TCGA.AG.3883	1	185232250	249198691	22018	-0.297	NEUTRAL	NA	409	Too-Many
TCGA.AA.A00F.01A	1	185267126	185703925	10	0.2541	NEUTRAL	NA	2	"HMCN1,IVNS1ABP"
TCGA.AA.3811	1	185426381	189147125	1117	-0.453	NEUTRAL	NA	8	"C1orf27,HMCN1,OCLM,PDC,PLA2G4A,PRG4,PTGS2,TPR"
TCGA.AA.3941	1	185430493	189147055	1116	-0.4483	NEUTRAL	NA	8	"C1orf27,HMCN1,OCLM,PDC,PLA2G4A,PRG4,PTGS2,TPR"
TCGA.AA.3982	1	185430493	189147179	1118	-0.4313	NEUTRAL	NA	8	"C1orf27,HMCN1,OCLM,PDC,PLA2G4A,PRG4,PTGS2,TPR"
TCGA.AA.3867	1	185430493	199715920	4003	-0.4076	NEUTRAL	NA	36	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,HMCN1,KCNT2,LHX9,NEK7,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TPR,TROVE2,UCHL5,ZBTB41"
TCGA.CK.5914.01A	1	185815097	185902654	10	0.1639	NEUTRAL	NA	1	HMCN1
TCGA.AA.A00F.01A	1	185815097	186113328	84	-0.2751	NEUTRAL	NA	1	HMCN1
TCGA.AG.3909.01A	1	185815097	186158662	101	0.1668	NEUTRAL	NA	1	HMCN1
TCGA.AG.A014.01A	1	185815097	192335004	219	-0.4252	NEUTRAL	NA	11	"BRINP3,C1orf27,HMCN1,OCLM,PDC,PLA2G4A,PRG4,PTGS2,RGS18,RGS21,TPR"
TCGA.AY.6196	1	185902977	186156513	66	-0.1073	NEUTRAL	NA	1	HMCN1
TCGA.AA.A02K.01A	1	186051944	186057722	5	-0.3231	NEUTRAL	NA	1	HMCN1
TCGA.CK.5914.01A	1	186057738	186329353	95	0.2651	NEUTRAL	NA	3	"HMCN1,PRG4,TPR"
TCGA.AA.A02K.01A	1	186059839	206858529	1379	0.0138	NEUTRAL	NA	131	Too-Many
TCGA.AA.A02H.01A	1	186072606	186088875	11	0.1428	NEUTRAL	NA	1	HMCN1
TCGA.AA.A01Q.01A	1	186072606	186275423	43	-0.0121	NEUTRAL	NA	2	"HMCN1,PRG4"
TCGA.AA.A010.01A	1	186086584	186273203	33	-0.1913	NEUTRAL	NA	2	"HMCN1,PRG4"
TCGA.AA.A02H.01A	1	186120323	186143599	10	0.3411	NEUTRAL	NA	1	HMCN1
TCGA.AA.A00F.01A	1	186120323	186418490	33	-0.2297	NEUTRAL	NA	6	"C1orf27,HMCN1,OCLM,PDC,PRG4,TPR"
TCGA.AG.A025.01A	1	186140422	186315235	48	0.0605	NEUTRAL	NA	3	"HMCN1,PRG4,TPR"
TCGA.AA.3980.01A	1	186265964	186276151	7	-0.3509	NEUTRAL	NA	1	PRG4
TCGA.AG.A01N.01A	1	186265964	186283720	17	-0.0445	NEUTRAL	NA	2	"PRG4,TPR"
TCGA.AA.A02H.01A	1	186265964	186295187	24	0.014	NEUTRAL	NA	2	"PRG4,TPR"
TCGA.AG.3909.01A	1	186276151	186329856	47	-0.1983	NEUTRAL	NA	2	"PRG4,TPR"
TCGA.AA.3980.01A	1	186276540	249111001	4044	0.1066	NEUTRAL	NA	404	Too-Many
TCGA.AA.A01Q.01A	1	186276998	186643478	11	0.0049	NEUTRAL	NA	6	"C1orf27,OCLM,PDC,PRG4,PTGS2,TPR"
TCGA.AG.3891.01A	1	186278902	198673513	362	-0.2924	NEUTRAL	NA	35	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,KCNT2,LHX9,NEK7,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TPR,TROVE2,UCHL5,ZBTB41"
TCGA.AG.3906.01A	1	186280119	200377936	398	-0.1592	NEUTRAL	NA	37	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,KCNT2,LHX9,NEK7,NR5A2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TPR,TROVE2,UCHL5,ZBTB41,ZNF281"
TCGA.AA.A010.01A	1	186282796	186313456	25	-0.1784	NEUTRAL	NA	2	"PRG4,TPR"
TCGA.AG.A01N.01A	1	186307175	186316396	9	0.3595	NEUTRAL	NA	1	TPR
TCGA.AA.A02H.01A	1	186312446	186360777	32	-0.1915	NEUTRAL	NA	2	"C1orf27,TPR"
TCGA.AG.A01L.01A	1	186313456	186355081	26	-0.4633	NEUTRAL	NA	2	"C1orf27,TPR"
TCGA.AA.A00N.01A	1	186322768	186360777	24	-0.4888	NEUTRAL	NA	2	"C1orf27,TPR"
TCGA.AG.A01N.01A	1	186325390	186342453	13	0.2175	NEUTRAL	NA	1	TPR
TCGA.AG.A01L.01A	1	186357544	196716192	159	-0.1844	NEUTRAL	NA	18	"B3GALT2,BRINP3,C1orf27,CDC73,CFH,GLRX2,KCNT2,OCLM,PDC,PLA2G4A,PTGS2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.AG.3909.01A	1	186360777	186418490	11	-0.0974	NEUTRAL	NA	3	"C1orf27,OCLM,PDC"
TCGA.AA.A02H.01A	1	186367416	196716192	154	0.2835	NEUTRAL	NA	18	"B3GALT2,BRINP3,C1orf27,CDC73,CFH,GLRX2,KCNT2,OCLM,PDC,PLA2G4A,PTGS2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.AG.A025.01A	1	186367416	197104205	222	0.1804	NEUTRAL	NA	25	"ASPM,B3GALT2,BRINP3,C1orf27,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,F13B,GLRX2,KCNT2,OCLM,PDC,PLA2G4A,PTGS2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.AF.2687	1	186554456	249198691	21569	-0.2273	NEUTRAL	NA	401	Too-Many
TCGA.AA.A00F.01A	1	186643478	186648162	7	0.197	NEUTRAL	NA	1	PTGS2
TCGA.AA.A00F.01A	1	186823422	192627281	37	-0.2915	NEUTRAL	NA	6	"BRINP3,PLA2G4A,RGS1,RGS13,RGS18,RGS21"
TCGA.AG.3909.01A	1	186823422	192628426	42	0.0666	NEUTRAL	NA	6	"BRINP3,PLA2G4A,RGS1,RGS13,RGS18,RGS21"
TCGA.AA.A01Q.01A	1	186823422	193205334	71	-0.0182	NEUTRAL	NA	12	"B3GALT2,BRINP3,CDC73,GLRX2,PLA2G4A,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.CK.5914.01A	1	186919768	190067660	8	-0.4315	NEUTRAL	NA	2	"BRINP3,PLA2G4A"
TCGA.EI.7004	1	186934091	191015088	1250	0.0019	NEUTRAL	NA	2	"BRINP3,PLA2G4A"
TCGA.AG.3726	1	186986890	190993051	1217	-0.0032	NEUTRAL	NA	1	BRINP3
TCGA.AA.3494	1	187138862	188382039	426	0.039	NEUTRAL	NA	0	None
TCGA.AF.4110	1	187239091	193871477	1892	-0.4121	NEUTRAL	NA	11	"B3GALT2,BRINP3,CDC73,GLRX2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.AA.3549	1	187239428	208349258	6445	0.0069	NEUTRAL	NA	142	Too-Many
TCGA.DY.A1DC	1	187662029	189128231	429	0.0143	NEUTRAL	NA	0	None
TCGA.DM.A1DB	1	188241192	249198691	21073	0.0078	NEUTRAL	NA	399	Too-Many
TCGA.AA.3494	1	188382449	188583476	68	-0.3889	NEUTRAL	NA	0	None
TCGA.AA.3864	1	188574520	189147179	124	-0.2215	NEUTRAL	NA	0	None
TCGA.AA.3494	1	188583915	188985066	75	-0.0099	NEUTRAL	NA	0	None
TCGA.CA.6715	1	188813512	231692379	14190	-0.0021	NEUTRAL	NA	285	Too-Many
TCGA.AA.3494	1	188993945	195818618	1909	-0.399	NEUTRAL	NA	11	"B3GALT2,BRINP3,CDC73,GLRX2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.EI.6511	1	189032479	249198691	20853	0.0012	NEUTRAL	NA	399	Too-Many
TCGA.AA.3811	1	189155454	199700151	2882	-0.4829	NEUTRAL	NA	28	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,KCNT2,LHX9,NEK7,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5,ZBTB41"
TCGA.AA.3977	1	189155454	217373961	9404	0.0201	NEUTRAL	NA	184	Too-Many
TCGA.AA.3870	1	189159260	207570176	5538	0.0133	NEUTRAL	NA	136	Too-Many
TCGA.AA.3864	1	189159260	221846843	10990	-0.0027	NEUTRAL	NA	199	Too-Many
TCGA.AA.3872	1	189159260	236736641	16256	0.2092	NEUTRAL	NA	310	Too-Many
TCGA.AA.3866	1	189159260	249198691	20821	0.143	NEUTRAL	NA	399	Too-Many
TCGA.AA.3955	1	189159260	249198691	20820	0.0114	NEUTRAL	NA	399	Too-Many
TCGA.AA.3982	1	189181424	199807062	2893	-0.5084	NEUTRAL	NA	28	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,KCNT2,LHX9,NEK7,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5,ZBTB41"
TCGA.AA.3530	1	189181424	240816219	18107	0.0771	NEUTRAL	NA	318	Too-Many
TCGA.DY.A1DC	1	189277545	197557483	2228	0.0378	NEUTRAL	NA	23	"ASPM,B3GALT2,BRINP3,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,KCNT2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5,ZBTB41"
TCGA.EI.6508	1	189305534	249198691	20804	-0.0011	NEUTRAL	NA	399	Too-Many
TCGA.CA.5797	1	189515765	249198691	20738	0.0349	NEUTRAL	NA	399	Too-Many
TCGA.AY.6196	1	189669365	190400983	224	0.2375	NEUTRAL	NA	1	BRINP3
TCGA.RU.A8FL	1	189775774	241581282	18340	0.238	NEUTRAL	NA	319	Too-Many
TCGA.DM.A0XD	1	189844492	234480497	15270	0.0115	NEUTRAL	NA	293	Too-Many
TCGA.AA.3952	1	190061493	230084669	13220	0.0285	NEUTRAL	NA	268	Too-Many
TCGA.AG.A011.01A	1	190067151	201120833	446	-0.4134	NEUTRAL	NA	39	"ASCL5,ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf106,C1orf53,CACNA1S,CAMSAP2,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DDX59,DENND1B,F13B,GLRX2,GPR25,KCNT2,KIF14,KIF21B,LHX9,NEK7,NR5A2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TMEM9,TROVE2,UCHL5,ZBTB41,ZNF281"
TCGA.AY.6196	1	190406330	224237654	11238	-0.1516	NEUTRAL	NA	213	Too-Many
TCGA.EI.7004	1	191021827	249198691	20239	0.2819	NEUTRAL	NA	398	Too-Many
TCGA.D5.6533	1	191497547	201130813	2720	0.1111	NEUTRAL	NA	38	"ASCL5,ASPM,ATP6V1G3,B3GALT2,C1orf106,C1orf53,CACNA1S,CAMSAP2,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DDX59,DENND1B,F13B,GLRX2,GPR25,KCNT2,KIF14,KIF21B,LHX9,NEK7,NR5A2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TMEM9,TROVE2,UCHL5,ZBTB41,ZNF281"
TCGA.AF.A56N	1	191871215	243044280	18360	-0.255	NEUTRAL	NA	327	Too-Many
TCGA.A6.3807	1	192487112	193265576	231	-0.513	NEUTRAL	NA	8	"B3GALT2,CDC73,GLRX2,RGS1,RGS13,RGS2,TROVE2,UCHL5"
TCGA.AG.A014.01A	1	192544873	193116960	45	-0.0682	NEUTRAL	NA	7	"CDC73,GLRX2,RGS1,RGS13,RGS2,TROVE2,UCHL5"
TCGA.AA.A00F.01A	1	192628426	193107163	24	0.1174	NEUTRAL	NA	6	"CDC73,GLRX2,RGS13,RGS2,TROVE2,UCHL5"
TCGA.AA.A010.01A	1	192628426	196642067	79	0.0401	NEUTRAL	NA	9	"B3GALT2,CDC73,CFH,GLRX2,KCNT2,RGS13,RGS2,TROVE2,UCHL5"
TCGA.AA.A00D.01A	1	192778154	192780505	4	0.1973	NEUTRAL	NA	1	RGS2
TCGA.AG.3909.01A	1	192778154	193054058	24	-0.4464	NEUTRAL	NA	3	"RGS2,TROVE2,UCHL5"
TCGA.F5.6810	1	192888344	193187234	56	-0.0594	NEUTRAL	NA	5	"B3GALT2,CDC73,GLRX2,TROVE2,UCHL5"
TCGA.EI.6513	1	192911971	249198691	19793	0.0038	NEUTRAL	NA	393	Too-Many
TCGA.AA.A00N.01A	1	192985402	193038168	13	0.1952	NEUTRAL	NA	2	"TROVE2,UCHL5"
TCGA.AA.A00D.01A	1	192985402	193091294	15	-0.4768	NEUTRAL	NA	4	"CDC73,GLRX2,TROVE2,UCHL5"
TCGA.CK.5914.01A	1	192998258	193060737	15	-0.0507	NEUTRAL	NA	2	"TROVE2,UCHL5"
TCGA.AA.3509.01A	1	193070206	193205334	18	0.3236	NEUTRAL	NA	3	"B3GALT2,CDC73,GLRX2"
TCGA.AA.A00D.01A	1	193094195	193116960	6	0.0762	NEUTRAL	NA	1	CDC73
TCGA.CK.5914.01A	1	193107163	196205072	15	-0.0225	NEUTRAL	NA	3	"B3GALT2,CDC73,KCNT2"
TCGA.AG.3909.01A	1	193110989	196748904	65	0.0203	NEUTRAL	NA	5	"B3GALT2,CDC73,CFH,CFHR3,KCNT2"
TCGA.AA.A00F.01A	1	193110989	197102468	118	-0.1945	NEUTRAL	NA	11	"ASPM,B3GALT2,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,F13B,KCNT2"
TCGA.AG.A014.01A	1	193119384	196748300	62	-0.505	NEUTRAL	NA	5	"B3GALT2,CDC73,CFH,CFHR3,KCNT2"
TCGA.AG.4021	1	193135597	215213482	7472	0.0093	NEUTRAL	NA	172	Too-Many
TCGA.AA.A01Q.01A	1	193218813	196438074	25	-0.3462	NEUTRAL	NA	2	"CDC73,KCNT2"
TCGA.F5.6810	1	193239403	228731676	11905	0.2296	NEUTRAL	NA	248	Too-Many
TCGA.DM.A1D9	1	193253159	226676735	11321	0.0127	NEUTRAL	NA	223	Too-Many
TCGA.A6.3807	1	193275028	249198691	19636	0.0032	NEUTRAL	NA	388	Too-Many
TCGA.AF.4110	1	193875276	196901752	851	0.3097	NEUTRAL	NA	5	"CFH,CFHR1,CFHR3,CFHR4,KCNT2"
TCGA.AD.6901	1	194384675	233315612	13418	0.0199	NEUTRAL	NA	279	Too-Many
TCGA.AG.3726	1	194546766	195267071	211	0.0049	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	1	195061192	247180566	3856	-0.1177	NEUTRAL	NA	335	Too-Many
TCGA.F5.6811.01A	1	195357617	195818898	48	0.0287	NEUTRAL	NA	0	None
TCGA.AA.3494	1	195819148	241034472	16371	-0.0169	NEUTRAL	NA	308	Too-Many
TCGA.F5.6811.01A	1	195878442	196968009	57	-0.0061	NEUTRAL	NA	7	"CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,KCNT2"
TCGA.AG.3882	1	195941319	249198691	18911	0.1854	NEUTRAL	NA	388	Too-Many
TCGA.AA.A01Q.01A	1	196448277	197881579	122	-0.0844	NEUTRAL	NA	13	"ASPM,C1orf53,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,KCNT2,ZBTB41"
TCGA.AA.3967.01A	1	196658528	196887298	33	-0.5008	NEUTRAL	NA	4	"CFH,CFHR1,CFHR3,CFHR4"
TCGA.AA.A010.01A	1	196705947	197019780	42	0.2507	NEUTRAL	NA	7	"CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,F13B"
TCGA.AG.A01L.01A	1	196743957	196800878	12	0.1657	NEUTRAL	NA	2	"CFHR1,CFHR3"
TCGA.AG.A014.01A	1	196748904	196927981	21	-0.1351	NEUTRAL	NA	4	"CFHR1,CFHR2,CFHR3,CFHR4"
TCGA.AG.3909.01A	1	196757297	196919930	19	-0.4809	NEUTRAL	NA	4	"CFHR1,CFHR2,CFHR3,CFHR4"
TCGA.CK.5914.01A	1	196762405	196857212	8	-0.4736	NEUTRAL	NA	3	"CFHR1,CFHR3,CFHR4"
TCGA.AA.A00N.01A	1	196762405	196919930	16	0.2498	NEUTRAL	NA	4	"CFHR1,CFHR2,CFHR3,CFHR4"
TCGA.AA.A00D.01A	1	196797153	196887298	7	-0.1499	NEUTRAL	NA	2	"CFHR1,CFHR4"
TCGA.F5.6863	1	196835497	196901752	21	-0.1948	NEUTRAL	NA	1	CFHR4
TCGA.AG.A01L.01A	1	196857212	198687205	139	-0.1628	NEUTRAL	NA	13	"ASPM,ATP6V1G3,C1orf53,CFHR2,CFHR4,CFHR5,CRB1,DENND1B,F13B,LHX9,NEK7,PTPRC,ZBTB41"
TCGA.A6.3810.01A	1	196857212	249213943	3866	0.3334	NEUTRAL	NA	385	Too-Many
TCGA.CK.5914.01A	1	196871526	196977590	19	0.0952	NEUTRAL	NA	3	"CFHR2,CFHR4,CFHR5"
TCGA.AF.4110	1	196916358	197019857	17	-0.4511	NEUTRAL	NA	3	"CFHR2,CFHR5,F13B"
TCGA.AA.3967.01A	1	196918564	228362474	2294	0.1013	NEUTRAL	NA	235	Too-Many
TCGA.AG.3909.01A	1	196926974	197073684	34	0.0922	NEUTRAL	NA	4	"ASPM,CFHR2,CFHR5,F13B"
TCGA.AG.A014.01A	1	196946675	197104205	43	-0.4235	NEUTRAL	NA	3	"ASPM,CFHR5,F13B"
TCGA.AG.A01W.01A	1	196964064	196983850	10	0.1392	NEUTRAL	NA	1	CFHR5
TCGA.AA.3861.01A	1	196977590	214576165	1609	0.049	NEUTRAL	NA	162	Too-Many
TCGA.AF.4110	1	197026264	201725444	1537	0.2313	NEUTRAL	NA	29	"ASCL5,ASPM,ATP6V1G3,C1orf106,C1orf53,CACNA1S,CAMSAP2,CRB1,CSRP1,DDX59,DENND1B,F13B,GPR25,IGFN1,KIF14,KIF21B,LAD1,LHX9,NAV1,NEK7,NR5A2,PHLDA3,PKP1,PTPRC,TMEM9,TNNI1,TNNT2,ZBTB41,ZNF281"
TCGA.AA.A00N.01A	1	197069534	197099037	11	0.2787	NEUTRAL	NA	1	ASPM
TCGA.AG.3909.01A	1	197086892	197093971	5	-0.2718	NEUTRAL	NA	1	ASPM
TCGA.CK.5914.01A	1	197090994	197101347	8	0.0991	NEUTRAL	NA	1	ASPM
TCGA.F5.6811.01A	1	197094587	247180566	3679	-0.053	NEUTRAL	NA	327	Too-Many
TCGA.CK.5914.01A	1	197102468	197390159	25	-0.4051	NEUTRAL	NA	3	"ASPM,CRB1,ZBTB41"
TCGA.AA.A00F.01A	1	197104205	197113050	7	0.315	NEUTRAL	NA	1	ASPM
TCGA.AG.A014.01A	1	197108845	197403858	26	-0.0818	NEUTRAL	NA	3	"ASPM,CRB1,ZBTB41"
TCGA.AG.3909.01A	1	197115219	197297500	13	-0.3025	NEUTRAL	NA	3	"ASPM,CRB1,ZBTB41"
TCGA.AA.A00N.01A	1	197115219	197871742	47	0.3471	NEUTRAL	NA	5	"ASPM,C1orf53,CRB1,DENND1B,ZBTB41"
TCGA.AA.A00F.01A	1	197115219	201437594	294	-0.0608	NEUTRAL	NA	26	"ASCL5,ASPM,ATP6V1G3,C1orf106,C1orf53,CACNA1S,CAMSAP2,CRB1,DDX59,DENND1B,GPR25,IGFN1,KIF14,KIF21B,LAD1,LHX9,NEK7,NR5A2,PHLDA3,PKP1,PTPRC,TMEM9,TNNI1,TNNT2,ZBTB41,ZNF281"
TCGA.AG.A025.01A	1	197128438	249210793	3408	-0.0632	NEUTRAL	NA	380	Too-Many
TCGA.AA.A010.01A	1	197141253	198691519	85	-0.0082	NEUTRAL	NA	8	"ATP6V1G3,C1orf53,CRB1,DENND1B,LHX9,NEK7,PTPRC,ZBTB41"
TCGA.AA.A02H.01A	1	197168447	197316458	5	-0.204	NEUTRAL	NA	2	"CRB1,ZBTB41"
TCGA.G4.6299	1	197298859	249198691	18634	0.2234	NEUTRAL	NA	378	Too-Many
TCGA.AG.3611.01A	1	197390159	197411268	6	-0.0867	NEUTRAL	NA	1	CRB1
TCGA.CK.5914.01A	1	197396566	197446594	6	0.3116	NEUTRAL	NA	1	CRB1
TCGA.AG.3909.01A	1	197396566	197871742	27	0.0255	NEUTRAL	NA	3	"C1orf53,CRB1,DENND1B"
TCGA.AG.A014.01A	1	197407635	198827964	78	-0.4193	NEUTRAL	NA	7	"ATP6V1G3,C1orf53,CRB1,DENND1B,LHX9,NEK7,PTPRC"
TCGA.CK.5914.01A	1	197611819	197704643	9	-0.0116	NEUTRAL	NA	1	DENND1B
TCGA.DY.A1DC	1	197612758	249198691	18536	-0.0125	NEUTRAL	NA	377	Too-Many
TCGA.AA.A02H.01A	1	197874888	197886907	5	-0.4923	NEUTRAL	NA	2	"C1orf53,LHX9"
TCGA.AG.3909.01A	1	197886447	198827964	51	0.0485	NEUTRAL	NA	4	"ATP6V1G3,LHX9,NEK7,PTPRC"
TCGA.CK.5914.01A	1	197886907	198687205	36	0.1969	NEUTRAL	NA	4	"ATP6V1G3,LHX9,NEK7,PTPRC"
TCGA.AA.3971	1	198156910	230322121	11196	0.0003	NEUTRAL	NA	244	Too-Many
TCGA.AA.A01Q.01A	1	198201643	200017288	49	-0.1837	NEUTRAL	NA	4	"ATP6V1G3,NEK7,NR5A2,PTPRC"
TCGA.AG.A01W.01A	1	198644903	199280038	100	0.2342	NEUTRAL	NA	1	PTPRC
TCGA.AA.3815.01A	1	198665792	247241797	3557	-0.0125	NEUTRAL	NA	320	Too-Many
TCGA.AG.3891.01A	1	198675853	201122881	181	0.0151	NEUTRAL	NA	12	"ASCL5,C1orf106,CACNA1S,CAMSAP2,DDX59,GPR25,KIF14,KIF21B,NR5A2,PTPRC,TMEM9,ZNF281"
TCGA.CK.4948.01B	1	198691519	198827964	18	0.3492	NEUTRAL	NA	1	PTPRC
TCGA.AG.A01L.01A	1	198718517	208276450	1100	-0.1196	NEUTRAL	NA	115	Too-Many
TCGA.AG.A01J.01A	1	198724988	249210793	3241	-0.0402	NEUTRAL	NA	373	Too-Many
TCGA.AG.A01W.01A	1	199288907	199444048	47	0.0508	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	199452988	199557681	17	-0.1182	NEUTRAL	NA	0	None
TCGA.A6.5661	1	199506092	248407199	17866	-0.1031	NEUTRAL	NA	349	Too-Many
TCGA.AG.A01W.01A	1	199558764	199608900	20	0.372	NEUTRAL	NA	0	None
TCGA.G4.6298	1	199598881	249198691	17972	0.317	NEUTRAL	NA	371	Too-Many
TCGA.AG.A01W.01A	1	199617544	199624865	8	-0.4377	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	199646042	200026286	27	0.2936	NEUTRAL	NA	1	NR5A2
TCGA.AA.3811	1	199709385	208459810	3024	0.1946	NEUTRAL	NA	114	Too-Many
TCGA.AA.3867	1	199716261	249198691	17934	-0.0757	NEUTRAL	NA	371	Too-Many
TCGA.AA.3941	1	199807062	200137648	136	0.3339	NEUTRAL	NA	1	NR5A2
TCGA.AA.3982	1	199819400	200072965	100	0.1675	NEUTRAL	NA	1	NR5A2
TCGA.AA.3850	1	199819400	200137648	135	0.20765	NEUTRAL	NA	1	NR5A2
TCGA.AA.3844	1	199829614	208450000	2987	0.1553	NEUTRAL	NA	114	Too-Many
TCGA.CK.5914.01A	1	199996907	200555182	30	-0.3826	NEUTRAL	NA	3	"KIF14,NR5A2,ZNF281"
TCGA.AZ.4684.01A	1	199996907	200825087	73	0.1098	NEUTRAL	NA	5	"CAMSAP2,DDX59,KIF14,NR5A2,ZNF281"
TCGA.AG.A01N.01A	1	199996907	249118910	3268	0.2883	NEUTRAL	NA	369	Too-Many
TCGA.AA.A02H.01A	1	199996907	249210793	3198	0.0075	NEUTRAL	NA	372	Too-Many
TCGA.AG.A014.01A	1	199996907	249210793	3295	-0.1311	NEUTRAL	NA	372	Too-Many
TCGA.CK.4948.01B	1	199996907	249213943	3689	-0.0583	NEUTRAL	NA	372	Too-Many
TCGA.AA.A010.01A	1	200007777	200635023	56	0.3019	NEUTRAL	NA	4	"DDX59,KIF14,NR5A2,ZNF281"
TCGA.AG.A01W.01A	1	200029486	200047304	11	-0.2978	NEUTRAL	NA	1	NR5A2
TCGA.AG.A01W.01A	1	200048177	200225084	41	0.1904	NEUTRAL	NA	1	NR5A2
TCGA.AA.A00N.01A	1	200080303	200342145	8	0.2685	NEUTRAL	NA	1	NR5A2
TCGA.AA.A01Q.01A	1	200080303	200826875	65	0.2066	NEUTRAL	NA	5	"CAMSAP2,DDX59,KIF14,NR5A2,ZNF281"
TCGA.AA.3982	1	200081158	211122468	4109	0.1668	NEUTRAL	NA	127	Too-Many
TCGA.DM.A28M.01A	1	200089889	249213943	3682	0.1995	NEUTRAL	NA	372	Too-Many
TCGA.AA.3850	1	200143441	200149494	6	0.06925	NEUTRAL	NA	1	NR5A2
TCGA.AA.3850	1	200150163	203215063	1075	0.35715	NEUTRAL	NA	44	"ADIPOR1,ADORA1,ARL8A,ASCL5,C1orf106,CACNA1S,CAMSAP2,CHI3L1,CHIT1,CSRP1,CYB5R1,DDX59,ELF3,GPR25,GPR37L1,IGFN1,IPO9,KDM5B,KIF14,KIF21B,KLHL12,LAD1,LGR6,LMOD1,MYBPH,MYOG,NAV1,PHLDA3,PKP1,PPFIA4,PPP1R12B,PTPN7,RABIF,RNPEP,SHISA4,SYT2,TIMM17A,TMEM183A,TMEM183B,TMEM9,TNNI1,TNNT2,UBE2T,ZNF281"
TCGA.AG.A01W.01A	1	200246841	200584562	49	0.0435	NEUTRAL	NA	2	"KIF14,ZNF281"
TCGA.A6.3808.01A	1	200376197	200973856	97	-0.3199	NEUTRAL	NA	7	"C1orf106,CAMSAP2,DDX59,GPR25,KIF14,KIF21B,ZNF281"
TCGA.AA.A00N.01A	1	200377936	200618150	36	0.3478	NEUTRAL	NA	3	"DDX59,KIF14,ZNF281"
TCGA.AG.3909.01A	1	200522469	200569112	18	0.0229	NEUTRAL	NA	1	KIF14
TCGA.AG.3906.01A	1	200522469	201122881	141	0.1323	NEUTRAL	NA	9	"ASCL5,C1orf106,CACNA1S,CAMSAP2,DDX59,GPR25,KIF14,KIF21B,TMEM9"
TCGA.AG.3909.01A	1	200569442	200628113	18	-0.3265	NEUTRAL	NA	2	"DDX59,KIF14"
TCGA.AA.A00D.01A	1	200572317	201286652	142	-0.4782	NEUTRAL	NA	11	"ASCL5,C1orf106,CACNA1S,CAMSAP2,DDX59,GPR25,IGFN1,KIF14,KIF21B,PKP1,TMEM9"
TCGA.AG.A01W.01A	1	200652512	200841300	31	0.3171	NEUTRAL	NA	1	CAMSAP2
TCGA.AG.3909.01A	1	200729929	200860640	19	-0.1779	NEUTRAL	NA	3	"C1orf106,CAMSAP2,GPR25"
TCGA.CK.5914.01A	1	200729929	200978347	57	-0.0344	NEUTRAL	NA	4	"C1orf106,CAMSAP2,GPR25,KIF21B"
TCGA.AA.A010.01A	1	200842138	200961360	27	0.2413	NEUTRAL	NA	3	"C1orf106,GPR25,KIF21B"
TCGA.AZ.4684.01A	1	200842138	203802850	504	0.1232	NEUTRAL	NA	48	"ADIPOR1,ADORA1,ARL8A,ASCL5,ATP2B4,BTG2,C1orf106,CACNA1S,CHI3L1,CHIT1,CSRP1,CYB5R1,ELF3,FMOD,GPR25,GPR37L1,IGFN1,IPO9,KDM5B,KIF21B,KLHL12,LAD1,LAX1,LGR6,LMOD1,MYBPH,MYOG,NAV1,OPTC,PHLDA3,PKP1,PPFIA4,PPP1R12B,PRELP,PTPN7,RABIF,RNPEP,SHISA4,SYT2,TIMM17A,TMEM183A,TMEM183B,TMEM9,TNNI1,TNNT2,UBE2T,ZBED6,ZC3H11A"
TCGA.AG.4009.01A	1	200867403	201782239	171	0.1494	NEUTRAL	NA	13	"ASCL5,C1orf106,CACNA1S,CSRP1,IGFN1,KIF21B,LAD1,NAV1,PHLDA3,PKP1,TMEM9,TNNI1,TNNT2"
TCGA.AA.A00N.01A	1	200943171	201016606	36	0.3122	NEUTRAL	NA	2	"CACNA1S,KIF21B"
TCGA.AG.3909.01A	1	200945857	200978347	25	-0.2024	NEUTRAL	NA	1	KIF21B
TCGA.AG.A01W.01A	1	200964741	200971173	6	-0.1136	NEUTRAL	NA	1	KIF21B
TCGA.AG.3611.01A	1	200973856	201010574	8	0.0831	NEUTRAL	NA	2	"CACNA1S,KIF21B"
TCGA.AG.A01W.01A	1	200994095	201186630	29	0.3212	NEUTRAL	NA	4	"ASCL5,CACNA1S,IGFN1,TMEM9"
TCGA.AG.3909.01A	1	201008998	201039363	27	0.305	NEUTRAL	NA	1	CACNA1S
TCGA.AA.A010.01A	1	201022283	201029739	6	-0.2305	NEUTRAL	NA	1	CACNA1S
TCGA.A6.3808.01A	1	201022283	203028291	361	-0.1623	NEUTRAL	NA	32	"ADIPOR1,ARL8A,ASCL5,CACNA1S,CSRP1,CYB5R1,ELF3,GPR37L1,IGFN1,IPO9,KDM5B,KLHL12,LAD1,LGR6,LMOD1,NAV1,PHLDA3,PKP1,PPFIA4,PPP1R12B,PTPN7,RABIF,RNPEP,SHISA4,SYT2,TIMM17A,TMEM183A,TMEM183B,TMEM9,TNNI1,TNNT2,UBE2T"
TCGA.AA.A010.01A	1	201030367	201061073	22	0.2714	NEUTRAL	NA	1	CACNA1S
TCGA.AA.A00N.01A	1	201041838	201162329	22	0.2133	NEUTRAL	NA	4	"ASCL5,CACNA1S,IGFN1,TMEM9"
TCGA.AG.3909.01A	1	201041838	201263021	36	-0.3535	NEUTRAL	NA	5	"ASCL5,CACNA1S,IGFN1,PKP1,TMEM9"
TCGA.CK.5914.01A	1	201041838	201263021	47	-0.1454	NEUTRAL	NA	5	"ASCL5,CACNA1S,IGFN1,PKP1,TMEM9"
TCGA.AA.A010.01A	1	201062971	201112930	5	-0.1943	NEUTRAL	NA	3	"ASCL5,CACNA1S,TMEM9"
TCGA.AA.A01Q.01A	1	201115828	201291057	25	0.0885	NEUTRAL	NA	3	"IGFN1,PKP1,TMEM9"
TCGA.AG.A011.01A	1	201122881	201934514	122	0.2798	NEUTRAL	NA	13	"CSRP1,IGFN1,IPO9,LAD1,LMOD1,NAV1,PHLDA3,PKP1,SHISA4,TIMM17A,TMEM9,TNNI1,TNNT2"
TCGA.AG.3891.01A	1	201190542	201285631	10	-0.2073	NEUTRAL	NA	2	"IGFN1,PKP1"
TCGA.AG.3906.01A	1	201190542	201924600	113	0.0737	NEUTRAL	NA	11	"CSRP1,IGFN1,IPO9,LAD1,LMOD1,NAV1,PHLDA3,PKP1,SHISA4,TNNI1,TNNT2"
TCGA.AG.A02X.01A	1	201197421	203144423	299	0.1381	NEUTRAL	NA	32	"ADIPOR1,ADORA1,ARL8A,CSRP1,CYB5R1,ELF3,GPR37L1,IGFN1,IPO9,KDM5B,KLHL12,LAD1,LGR6,LMOD1,MYBPH,MYOG,NAV1,PHLDA3,PKP1,PPFIA4,PPP1R12B,PTPN7,RABIF,RNPEP,SHISA4,SYT2,TIMM17A,TMEM183A,TMEM183B,TNNI1,TNNT2,UBE2T"
TCGA.AG.A01W.01A	1	201250601	206042340	643	0.0691	NEUTRAL	NA	70	"ADIPOR1,ADORA1,ARL8A,ATP2B4,BTG2,CDK18,CHI3L1,CHIT1,CNTN2,CSRP1,CYB5R1,DSTYK,ELF3,ELK4,ETNK2,FMOD,GOLT1A,GPR37L1,IPO9,KDM5B,KISS1,KLHDC8A,KLHL12,LAD1,LAX1,LEMD1,LGR6,LMOD1,LRRN2,MDM4,MFSD4,MYBPH,MYOG,NAV1,NFASC,NUAK2,NUCKS1,OPTC,PHLDA3,PIK3C2B,PKP1,PLEKHA6,PM20D1,PPFIA4,PPP1R12B,PPP1R15B,PRELP,PTPN7,RAB29,RABIF,RBBP5,REN,RNPEP,SHISA4,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SYT2,TIMM17A,TMCC2,TMEM183A,TMEM183B,TMEM81,TNNI1,TNNT2,UBE2T,ZBED6,ZC3H11A"
TCGA.AA.A01C.01A	1	201282282	201294022	10	0.3005	NEUTRAL	NA	1	PKP1
TCGA.AG.3909.01A	1	201282282	202287403	162	0.0013	NEUTRAL	NA	17	"ARL8A,CSRP1,ELF3,GPR37L1,IPO9,LAD1,LGR6,LMOD1,NAV1,PHLDA3,PKP1,PTPN7,RNPEP,SHISA4,TIMM17A,TNNI1,TNNT2"
TCGA.AG.3891.01A	1	201286652	204103611	395	0.0923	NEUTRAL	NA	44	"ADIPOR1,ADORA1,ARL8A,ATP2B4,BTG2,CHI3L1,CHIT1,CSRP1,CYB5R1,ELF3,ETNK2,FMOD,GPR37L1,IPO9,KDM5B,KLHL12,LAD1,LAX1,LGR6,LMOD1,MYBPH,MYOG,NAV1,OPTC,PHLDA3,PKP1,PPFIA4,PPP1R12B,PRELP,PTPN7,RABIF,RNPEP,SHISA4,SNRPE,SOX13,SYT2,TIMM17A,TMEM183A,TMEM183B,TNNI1,TNNT2,UBE2T,ZBED6,ZC3H11A"
TCGA.AA.A01C.01A	1	201294826	201972315	104	-0.28	NEUTRAL	NA	12	"CSRP1,IPO9,LAD1,LMOD1,NAV1,PHLDA3,PKP1,RNPEP,SHISA4,TIMM17A,TNNI1,TNNT2"
TCGA.AA.A010.01A	1	201328671	201598532	39	0.19	NEUTRAL	NA	5	"CSRP1,LAD1,PHLDA3,TNNI1,TNNT2"
TCGA.CK.5914.01A	1	201328671	201687527	42	-0.1762	NEUTRAL	NA	6	"CSRP1,LAD1,NAV1,PHLDA3,TNNI1,TNNT2"
TCGA.D5.6923	1	201339379	208437609	2367	0.1762	NEUTRAL	NA	101	Too-Many
TCGA.AA.A00N.01A	1	201341096	201687527	29	-0.1696	NEUTRAL	NA	6	"CSRP1,LAD1,NAV1,PHLDA3,TNNI1,TNNT2"
TCGA.AG.3726	1	201344620	207980562	2131	0.0368	NEUTRAL	NA	99	"ADIPOR1,ADORA1,ARL8A,ATP2B4,AVPR1B,BTG2,C1orf116,C1orf186,C4BPA,C4BPB,CD46,CD55,CDK18,CHI3L1,CHIT1,CNTN2,CR1,CR1L,CR2,CSRP1,CTSE,CYB5R1,DSTYK,DYRK3,EIF2D,ELF3,ELK4,ETNK2,FAM72A,FAM72C,FCAMR,FCMR,FMOD,GOLT1A,GPR37L1,IKBKE,IL10,IL19,IL20,IL24,IPO9,KDM5B,KISS1,KLHDC8A,KLHL12,LAD1,LAX1,LEMD1,LGR6,LMOD1,LRRN2,MAPKAPK2,MDM4,MFSD4,MYBPH,MYOG,NAV1,NFASC,NUAK2,NUCKS1,OPTC,PFKFB2,PHLDA3,PIGR,PIK3C2B,PLEKHA6,PM20D1,PPFIA4,PPP1R12B,PPP1R15B,PRELP,PTPN7,RAB29,RABIF,RASSF5,RBBP5,REN,RNPEP,SHISA4,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SRGAP2,SRGAP2B,SRGAP2C,SYT2,TIMM17A,TMCC2,TMEM183A,TMEM183B,TMEM81,TNNI1,TNNT2,UBE2T,YOD1,ZBED6,ZC3H11A"
TCGA.AA.A00D.01A	1	201353855	215793388	1152	-0.4699	NEUTRAL	NA	140	Too-Many
TCGA.AA.A00F.01A	1	201618087	201858525	50	-0.0794	NEUTRAL	NA	3	"IPO9,NAV1,SHISA4"
TCGA.AA.A01Q.01A	1	201687527	202096827	80	0.1927	NEUTRAL	NA	8	"ELF3,GPR37L1,IPO9,LMOD1,NAV1,RNPEP,SHISA4,TIMM17A"
TCGA.AA.A00N.01A	1	201763557	201973434	61	-0.1403	NEUTRAL	NA	6	"IPO9,LMOD1,NAV1,RNPEP,SHISA4,TIMM17A"
TCGA.CK.5914.01A	1	201772673	201788916	13	-0.1903	NEUTRAL	NA	1	NAV1
TCGA.AG.4009.01A	1	201786219	201965228	40	-0.3719	NEUTRAL	NA	6	"IPO9,LMOD1,NAV1,RNPEP,SHISA4,TIMM17A"
TCGA.CK.5914.01A	1	201840247	202418070	98	-0.1773	NEUTRAL	NA	12	"ARL8A,ELF3,GPR37L1,IPO9,LGR6,LMOD1,PPP1R12B,PTPN7,RNPEP,SHISA4,TIMM17A,UBE2T"
TCGA.AA.A010.01A	1	201858060	201926367	11	0.3543	NEUTRAL	NA	3	"LMOD1,SHISA4,TIMM17A"
TCGA.AA.A00F.01A	1	201859530	201965228	13	0.3558	NEUTRAL	NA	4	"LMOD1,RNPEP,SHISA4,TIMM17A"
TCGA.AA.A00L.01A	1	201868373	224922237	1481	-0.423	NEUTRAL	NA	170	Too-Many
TCGA.AF.3914.01A	1	201915181	202096827	24	0.0611	NEUTRAL	NA	5	"ELF3,GPR37L1,LMOD1,RNPEP,TIMM17A"
TCGA.AG.A011.01A	1	201938553	203311442	210	-0.3134	NEUTRAL	NA	25	"ADIPOR1,ADORA1,ARL8A,BTG2,CHI3L1,CHIT1,CYB5R1,ELF3,FMOD,GPR37L1,KDM5B,KLHL12,LGR6,MYBPH,MYOG,PPFIA4,PPP1R12B,PTPN7,RABIF,RNPEP,SYT2,TIMM17A,TMEM183A,TMEM183B,UBE2T"
TCGA.AF.4110	1	201947771	212351318	3710	0.2158	NEUTRAL	NA	112	Too-Many
TCGA.AG.4009.01A	1	201966396	202092050	14	0.1059	NEUTRAL	NA	3	"ELF3,GPR37L1,RNPEP"
TCGA.AA.A00F.01A	1	201966396	202418070	67	0.0266	NEUTRAL	NA	8	"ARL8A,ELF3,GPR37L1,LGR6,PPP1R12B,PTPN7,RNPEP,UBE2T"
TCGA.AG.3906.01A	1	201973434	201984290	9	0.1254	NEUTRAL	NA	2	"ELF3,RNPEP"
TCGA.AA.A010.01A	1	201974634	202092050	9	0.304	NEUTRAL	NA	3	"ELF3,GPR37L1,RNPEP"
TCGA.AA.A01C.01A	1	201980217	203185970	189	-0.2865	NEUTRAL	NA	21	"ADIPOR1,ADORA1,ARL8A,CHI3L1,CHIT1,CYB5R1,ELF3,GPR37L1,KDM5B,KLHL12,LGR6,MYBPH,MYOG,PPFIA4,PPP1R12B,PTPN7,RABIF,SYT2,TMEM183A,TMEM183B,UBE2T"
TCGA.AF.3914.01A	1	202103523	202166475	18	-0.5047	NEUTRAL	NA	3	"ARL8A,LGR6,PTPN7"
TCGA.AA.A00N.01A	1	202103523	202196998	24	-0.4521	NEUTRAL	NA	3	"ARL8A,LGR6,PTPN7"
TCGA.AA.A01Q.01A	1	202127196	202699990	62	0.1034	NEUTRAL	NA	6	"KDM5B,LGR6,PPP1R12B,PTPN7,SYT2,UBE2T"
TCGA.AF.3914.01A	1	202172874	202574676	58	0.2968	NEUTRAL	NA	4	"LGR6,PPP1R12B,SYT2,UBE2T"
TCGA.AG.4009.01A	1	202196998	202304726	21	0.1939	NEUTRAL	NA	2	"LGR6,UBE2T"
TCGA.AG.3906.01A	1	202274748	204110283	243	-0.048	NEUTRAL	NA	28	"ADIPOR1,ADORA1,ATP2B4,BTG2,CHI3L1,CHIT1,CYB5R1,ETNK2,FMOD,KDM5B,KLHL12,LAX1,LGR6,MYBPH,MYOG,OPTC,PPFIA4,PPP1R12B,PRELP,RABIF,SNRPE,SOX13,SYT2,TMEM183A,TMEM183B,UBE2T,ZBED6,ZC3H11A"
TCGA.AG.3909.01A	1	202300911	202403737	13	-0.4901	NEUTRAL	NA	2	"PPP1R12B,UBE2T"
TCGA.AA.A00N.01A	1	202300911	202442972	19	-0.2939	NEUTRAL	NA	2	"PPP1R12B,UBE2T"
TCGA.AG.4009.01A	1	202317938	202509230	20	-0.1684	NEUTRAL	NA	1	PPP1R12B
TCGA.AG.3727	1	202370996	208851566	2259	0.0209	NEUTRAL	NA	84	"ADIPOR1,ADORA1,ATP2B4,AVPR1B,BTG2,C1orf116,C1orf186,C4BPA,C4BPB,CD34,CD46,CD55,CDK18,CHI3L1,CHIT1,CNTN2,CR1,CR1L,CR2,CTSE,CYB5R1,DSTYK,DYRK3,EIF2D,ELK4,ETNK2,FAM72A,FAM72C,FCAMR,FCMR,FMOD,GOLT1A,IKBKE,IL10,IL19,IL20,IL24,KDM5B,KISS1,KLHDC8A,KLHL12,LAX1,LEMD1,LRRN2,MAPKAPK2,MDM4,MFSD4,MYBPH,MYOG,NFASC,NUAK2,NUCKS1,OPTC,PFKFB2,PIGR,PIK3C2B,PLEKHA6,PLXNA2,PM20D1,PPFIA4,PPP1R12B,PPP1R15B,PRELP,RAB29,RABIF,RASSF5,RBBP5,REN,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SRGAP2,SRGAP2B,SRGAP2C,SYT2,TMCC2,TMEM183A,TMEM183B,TMEM81,YOD1,ZBED6,ZC3H11A"
TCGA.AA.A010.01A	1	202385898	202403737	8	0.2073	NEUTRAL	NA	1	PPP1R12B
TCGA.AA.A010.01A	1	202442972	202574676	22	0.2005	NEUTRAL	NA	2	"PPP1R12B,SYT2"
TCGA.AG.3909.01A	1	202442972	202574676	22	0.2652	NEUTRAL	NA	2	"PPP1R12B,SYT2"
TCGA.AA.A00F.01A	1	202457610	202574676	20	-0.2141	NEUTRAL	NA	2	"PPP1R12B,SYT2"
TCGA.AG.4009.01A	1	202527977	202574676	15	0.1339	NEUTRAL	NA	2	"PPP1R12B,SYT2"
TCGA.D5.6533	1	202687706	209540090	2456	0.1929	NEUTRAL	NA	82	"ADIPOR1,ADORA1,ATP2B4,AVPR1B,BTG2,C1orf116,C1orf186,C4BPA,C4BPB,CD34,CD46,CD55,CDK18,CHI3L1,CHIT1,CNTN2,CR1,CR1L,CR2,CTSE,CYB5R1,DSTYK,DYRK3,EIF2D,ELK4,ETNK2,FAM72A,FAM72C,FCAMR,FCMR,FMOD,GOLT1A,IKBKE,IL10,IL19,IL20,IL24,KDM5B,KISS1,KLHDC8A,KLHL12,LAX1,LEMD1,LRRN2,MAPKAPK2,MDM4,MFSD4,MYBPH,MYOG,NFASC,NUAK2,NUCKS1,OPTC,PFKFB2,PIGR,PIK3C2B,PLEKHA6,PLXNA2,PM20D1,PPFIA4,PPP1R15B,PRELP,RAB29,RABIF,RASSF5,RBBP5,REN,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SRGAP2,SRGAP2B,SRGAP2C,TMCC2,TMEM183A,TMEM183B,TMEM81,YOD1,ZBED6,ZC3H11A"
TCGA.AF.3914.01A	1	202698125	202705291	7	-0.0793	NEUTRAL	NA	1	KDM5B
TCGA.AA.A00F.01A	1	202698125	202731775	21	0.3271	NEUTRAL	NA	1	KDM5B
TCGA.AG.A00C.01A	1	202698125	203139381	94	0.2712	NEUTRAL	NA	11	"ADIPOR1,ADORA1,CYB5R1,KDM5B,KLHL12,MYBPH,MYOG,PPFIA4,RABIF,TMEM183A,TMEM183B"
TCGA.AA.A01Q.01A	1	202700924	202719735	12	-0.2767	NEUTRAL	NA	1	KDM5B
TCGA.AG.A008.01A	1	202704510	207317839	617	0.0846	NEUTRAL	NA	75	"ADIPOR1,ADORA1,ATP2B4,AVPR1B,BTG2,C1orf116,C1orf186,C4BPA,C4BPB,CDK18,CHI3L1,CHIT1,CNTN2,CTSE,CYB5R1,DSTYK,DYRK3,EIF2D,ELK4,ETNK2,FAM72A,FAM72C,FCAMR,FCMR,FMOD,GOLT1A,IKBKE,IL10,IL19,IL20,IL24,KDM5B,KISS1,KLHDC8A,KLHL12,LAX1,LEMD1,LRRN2,MAPKAPK2,MDM4,MFSD4,MYBPH,MYOG,NFASC,NUAK2,NUCKS1,OPTC,PFKFB2,PIGR,PIK3C2B,PLEKHA6,PM20D1,PPFIA4,PPP1R15B,PRELP,RAB29,RABIF,RASSF5,RBBP5,REN,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SRGAP2,SRGAP2B,SRGAP2C,TMCC2,TMEM183A,TMEM183B,TMEM81,YOD1,ZBED6,ZC3H11A"
TCGA.AA.A010.01A	1	202705291	202718022	8	-0.1651	NEUTRAL	NA	1	KDM5B
TCGA.AF.3914.01A	1	202714944	202850077	17	-0.1332	NEUTRAL	NA	2	"KDM5B,RABIF"
TCGA.AA.A00N.01A	1	202722005	202858061	14	-0.071	NEUTRAL	NA	2	"KDM5B,RABIF"
TCGA.CK.5914.01A	1	202722005	202880133	22	-0.2277	NEUTRAL	NA	3	"KDM5B,KLHL12,RABIF"
TCGA.AA.A01Q.01A	1	202722005	203045468	62	0.1665	NEUTRAL	NA	8	"ADIPOR1,CYB5R1,KDM5B,KLHL12,PPFIA4,RABIF,TMEM183A,TMEM183B"
TCGA.AG.4009.01A	1	202724350	202920006	31	-0.3459	NEUTRAL	NA	4	"ADIPOR1,KDM5B,KLHL12,RABIF"
TCGA.AG.3909.01A	1	202729506	202858061	10	-0.0816	NEUTRAL	NA	2	"KDM5B,RABIF"
TCGA.AA.A00F.01A	1	202733129	202777212	6	-0.1202	NEUTRAL	NA	1	KDM5B
TCGA.AA.A010.01A	1	202742214	203040753	67	0.281	NEUTRAL	NA	8	"ADIPOR1,CYB5R1,KDM5B,KLHL12,PPFIA4,RABIF,TMEM183A,TMEM183B"
TCGA.AA.A00F.01A	1	202850077	203053717	39	0.3175	NEUTRAL	NA	8	"ADIPOR1,CYB5R1,KLHL12,MYOG,PPFIA4,RABIF,TMEM183A,TMEM183B"
TCGA.AF.3914.01A	1	202858061	202920006	19	0.32	NEUTRAL	NA	3	"ADIPOR1,KLHL12,RABIF"
TCGA.AA.3518	1	202882302	203170933	113	0.0814	NEUTRAL	NA	10	"ADIPOR1,ADORA1,CHI3L1,CYB5R1,KLHL12,MYBPH,MYOG,PPFIA4,TMEM183A,TMEM183B"
TCGA.AF.3914.01A	1	202936230	203787661	112	0.2778	NEUTRAL	NA	17	"ADORA1,ATP2B4,BTG2,CHI3L1,CHIT1,CYB5R1,FMOD,LAX1,MYBPH,MYOG,OPTC,PPFIA4,PRELP,TMEM183A,TMEM183B,ZBED6,ZC3H11A"
TCGA.AG.3611.01A	1	202976849	202989879	6	-0.0479	NEUTRAL	NA	2	"TMEM183A,TMEM183B"
TCGA.AG.4009.01A	1	202977723	203012473	8	-0.1615	NEUTRAL	NA	3	"PPFIA4,TMEM183A,TMEM183B"
TCGA.AG.3909.01A	1	203008095	203140180	37	-0.2642	NEUTRAL	NA	4	"ADORA1,MYBPH,MYOG,PPFIA4"
TCGA.CK.5914.01A	1	203008095	203140463	40	-0.0601	NEUTRAL	NA	4	"ADORA1,MYBPH,MYOG,PPFIA4"
TCGA.AG.4009.01A	1	203013032	203455797	60	0.2474	NEUTRAL	NA	9	"ADORA1,BTG2,CHI3L1,CHIT1,FMOD,MYBPH,MYOG,PPFIA4,PRELP"
TCGA.AA.A00N.01A	1	203025166	203138084	21	-0.0039	NEUTRAL	NA	4	"ADORA1,MYBPH,MYOG,PPFIA4"
TCGA.AA.A01Q.01A	1	203052986	203152742	20	-0.4583	NEUTRAL	NA	4	"ADORA1,CHI3L1,MYBPH,MYOG"
TCGA.AA.A00F.01A	1	203054618	203786129	72	-0.1793	NEUTRAL	NA	13	"ADORA1,ATP2B4,BTG2,CHI3L1,CHIT1,FMOD,LAX1,MYBPH,MYOG,OPTC,PRELP,ZBED6,ZC3H11A"
TCGA.AG.A00C.01A	1	203140180	203742955	63	-0.2534	NEUTRAL	NA	9	"ATP2B4,BTG2,CHI3L1,CHIT1,FMOD,LAX1,MYBPH,OPTC,PRELP"
TCGA.AG.A02X.01A	1	203152742	236702137	2198	0.1852	NEUTRAL	NA	238	Too-Many
TCGA.AA.A01Q.01A	1	203153636	203188745	8	0.0494	NEUTRAL	NA	2	"CHI3L1,CHIT1"
TCGA.AA.3518	1	203181038	204426372	490	0.0603	NEUTRAL	NA	18	"ATP2B4,BTG2,CHIT1,ETNK2,FMOD,GOLT1A,KISS1,LAX1,OPTC,PIK3C2B,PLEKHA6,PPP1R15B,PRELP,REN,SNRPE,SOX13,ZBED6,ZC3H11A"
TCGA.AA.A01Q.01A	1	203191298	203194748	5	-0.5086	NEUTRAL	NA	1	CHIT1
TCGA.AA.A01C.01A	1	203197605	203696475	33	-0.1138	NEUTRAL	NA	6	"ATP2B4,BTG2,CHIT1,FMOD,OPTC,PRELP"
TCGA.AA.A01Q.01A	1	203197605	204094979	69	0.1378	NEUTRAL	NA	11	"ATP2B4,BTG2,CHIT1,FMOD,LAX1,OPTC,PRELP,SNRPE,SOX13,ZBED6,ZC3H11A"
TCGA.AA.3850	1	203236471	207183082	1298	0.36075	NEUTRAL	NA	57	"ATP2B4,AVPR1B,BTG2,C1orf186,CDK18,CNTN2,CTSE,DSTYK,DYRK3,EIF2D,ELK4,ETNK2,FAM72A,FAM72C,FCAMR,FCMR,FMOD,GOLT1A,IKBKE,IL10,IL19,IL20,IL24,KISS1,KLHDC8A,LAX1,LEMD1,LRRN2,MAPKAPK2,MDM4,MFSD4,NFASC,NUAK2,NUCKS1,OPTC,PIGR,PIK3C2B,PLEKHA6,PM20D1,PPP1R15B,PRELP,RAB29,RASSF5,RBBP5,REN,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SRGAP2,SRGAP2B,SRGAP2C,TMCC2,TMEM81,ZBED6,ZC3H11A"
TCGA.CK.5914.01A	1	203274688	203471992	11	0.0349	NEUTRAL	NA	4	"BTG2,FMOD,OPTC,PRELP"
TCGA.AG.A011.01A	1	203316420	205074107	215	0.2753	NEUTRAL	NA	22	"ATP2B4,CNTN2,ETNK2,FMOD,GOLT1A,KISS1,LAX1,LRRN2,MDM4,NFASC,OPTC,PIK3C2B,PLEKHA6,PPP1R15B,PRELP,RBBP5,REN,SNRPE,SOX13,TMEM81,ZBED6,ZC3H11A"
TCGA.AG.4009.01A	1	203465115	203468760	4	-0.3895	NEUTRAL	NA	1	OPTC
TCGA.AA.A010.01A	1	203465115	204094979	65	0.3636	NEUTRAL	NA	7	"ATP2B4,LAX1,OPTC,SNRPE,SOX13,ZBED6,ZC3H11A"
TCGA.AG.4009.01A	1	203472651	203742955	27	0.1959	NEUTRAL	NA	3	"ATP2B4,LAX1,OPTC"
TCGA.CK.5914.01A	1	203739928	204129641	52	-0.412	NEUTRAL	NA	7	"ETNK2,LAX1,REN,SNRPE,SOX13,ZBED6,ZC3H11A"
TCGA.AG.4009.01A	1	203786129	203802850	7	-0.3198	NEUTRAL	NA	1	ZC3H11A
TCGA.AA.A00F.01A	1	203787661	203800739	5	0.2704	NEUTRAL	NA	1	ZC3H11A
TCGA.AF.3914.01A	1	203797380	203831236	15	-0.3444	NEUTRAL	NA	2	"SNRPE,ZC3H11A"
TCGA.AA.A00F.01A	1	203818797	204167527	26	0.2066	NEUTRAL	NA	7	"ETNK2,GOLT1A,KISS1,REN,SNRPE,SOX13,ZC3H11A"
TCGA.AA.A01C.01A	1	203818797	207639853	453	-0.2427	NEUTRAL	NA	57	"AVPR1B,C1orf116,C1orf186,C4BPA,C4BPB,CD55,CDK18,CNTN2,CR2,CTSE,DSTYK,DYRK3,EIF2D,ELK4,ETNK2,FAM72A,FAM72C,FCAMR,FCMR,GOLT1A,IKBKE,IL10,IL19,IL20,IL24,KISS1,KLHDC8A,LEMD1,LRRN2,MAPKAPK2,MDM4,MFSD4,NFASC,NUAK2,NUCKS1,PFKFB2,PIGR,PIK3C2B,PLEKHA6,PM20D1,PPP1R15B,RAB29,RASSF5,RBBP5,REN,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SRGAP2,SRGAP2B,SRGAP2C,TMCC2,TMEM81,YOD1,ZC3H11A"
TCGA.AG.3909.01A	1	203830724	204171971	41	-0.2491	NEUTRAL	NA	6	"ETNK2,GOLT1A,KISS1,REN,SNRPE,SOX13"
TCGA.AF.3914.01A	1	203832751	204103611	17	0.3193	NEUTRAL	NA	3	"ETNK2,SNRPE,SOX13"
TCGA.AG.4009.01A	1	203834112	204103611	14	0.0807	NEUTRAL	NA	3	"ETNK2,SNRPE,SOX13"
TCGA.A6.3808.01A	1	203834112	205904773	297	0.1224	NEUTRAL	NA	29	"CDK18,CNTN2,DSTYK,ELK4,ETNK2,GOLT1A,KISS1,KLHDC8A,LEMD1,LRRN2,MDM4,MFSD4,NFASC,NUAK2,NUCKS1,PIK3C2B,PLEKHA6,PM20D1,PPP1R15B,RAB29,RBBP5,REN,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,TMCC2,TMEM81"
TCGA.AG.A00C.01A	1	203838936	204094979	13	-0.4189	NEUTRAL	NA	2	"SNRPE,SOX13"
TCGA.AZ.4684.01A	1	204082017	215759801	939	0.181	NEUTRAL	NA	100	"ANGEL2,ATF3,AVPR1B,BATF3,C1orf116,C1orf186,C1orf74,C4BPA,C4BPB,CAMK1G,CD34,CD46,CD55,CDK18,CENPF,CNTN2,CR1,CR1L,CR2,CTSE,DIEXF,DSTYK,DTL,DYRK3,EIF2D,ELK4,ETNK2,FAM71A,FAM72A,FAM72C,FCAMR,FCMR,FLVCR1,G0S2,GOLT1A,HHAT,HSD11B1,IKBKE,IL10,IL19,IL20,IL24,INTS7,IRF6,KCNH1,KCNK2,KCTD3,KISS1,KLHDC8A,LAMB3,LEMD1,LPGAT1,LRRN2,MAPKAPK2,MDM4,MFSD4,MIR205HG,NEK2,NENF,NFASC,NSL1,NUAK2,NUCKS1,PFKFB2,PIGR,PIK3C2B,PLEKHA6,PLXNA2,PM20D1,PPP1R15B,PPP2R5A,PROX1,PTPN14,RAB29,RASSF5,RBBP5,RCOR3,RD3,REN,RPS6KC1,SERTAD4,SLC26A9,SLC30A1,SLC41A1,SLC45A3,SMYD2,SOX13,SPATA45,SRGAP2,SRGAP2B,SRGAP2C,SYT14,TATDN3,TMCC2,TMEM206,TMEM81,TRAF3IP3,TRAF5,VASH2,YOD1"
TCGA.AG.A00C.01A	1	204101249	204167527	21	0.2838	NEUTRAL	NA	4	"ETNK2,GOLT1A,KISS1,REN"
TCGA.AF.3914.01A	1	204128477	212860131	753	0.2368	NEUTRAL	NA	85	"ATF3,AVPR1B,BATF3,C1orf116,C1orf186,C1orf74,C4BPA,C4BPB,CAMK1G,CD34,CD46,CD55,CDK18,CNTN2,CR1,CR1L,CR2,CTSE,DIEXF,DSTYK,DTL,DYRK3,EIF2D,ELK4,FAM71A,FAM72A,FAM72C,FCAMR,FCMR,G0S2,GOLT1A,HHAT,HSD11B1,IKBKE,IL10,IL19,IL20,IL24,INTS7,IRF6,KCNH1,KISS1,KLHDC8A,LAMB3,LEMD1,LPGAT1,LRRN2,MAPKAPK2,MDM4,MFSD4,MIR205HG,NEK2,NENF,NFASC,NUAK2,NUCKS1,PFKFB2,PIGR,PIK3C2B,PLEKHA6,PLXNA2,PM20D1,PPP1R15B,PPP2R5A,RAB29,RASSF5,RBBP5,RCOR3,RD3,REN,SERTAD4,SLC26A9,SLC30A1,SLC41A1,SLC45A3,SRGAP2,SRGAP2B,SRGAP2C,SYT14,TMCC2,TMEM206,TMEM81,TRAF3IP3,TRAF5,YOD1"
TCGA.CK.5914.01A	1	204130392	204197806	13	0.0031	NEUTRAL	NA	4	"GOLT1A,KISS1,PLEKHA6,REN"
TCGA.AG.3891.01A	1	204135277	222905917	1185	-0.0597	NEUTRAL	NA	121	Too-Many
TCGA.AG.3906.01A	1	204159604	205569515	194	0.0839	NEUTRAL	NA	18	"CDK18,CNTN2,DSTYK,GOLT1A,KISS1,KLHDC8A,LEMD1,LRRN2,MDM4,MFSD4,NFASC,NUAK2,PIK3C2B,PLEKHA6,PPP1R15B,RBBP5,TMCC2,TMEM81"
TCGA.AG.4009.01A	1	204161854	205499346	181	0.2064	NEUTRAL	NA	17	"CDK18,CNTN2,DSTYK,GOLT1A,KISS1,KLHDC8A,LEMD1,LRRN2,MDM4,NFASC,NUAK2,PIK3C2B,PLEKHA6,PPP1R15B,RBBP5,TMCC2,TMEM81"
TCGA.AG.A00C.01A	1	204168275	204433550	53	-0.264	NEUTRAL	NA	4	"GOLT1A,PIK3C2B,PLEKHA6,PPP1R15B"
TCGA.AA.A01Q.01A	1	204168275	205057859	120	-0.1488	NEUTRAL	NA	10	"CNTN2,GOLT1A,LRRN2,MDM4,NFASC,PIK3C2B,PLEKHA6,PPP1R15B,RBBP5,TMEM81"
TCGA.AA.A00F.01A	1	204168275	205238066	147	-0.1149	NEUTRAL	NA	12	"CNTN2,DSTYK,GOLT1A,LRRN2,MDM4,NFASC,PIK3C2B,PLEKHA6,PPP1R15B,RBBP5,TMCC2,TMEM81"
TCGA.AG.3909.01A	1	204182945	204242705	18	0.2562	NEUTRAL	NA	2	"GOLT1A,PLEKHA6"
TCGA.D5.5538	1	204216761	228543302	8473	5.00E-04	NEUTRAL	NA	165	Too-Many
TCGA.AZ.6606	1	204363851	204367667	3	-0.4673	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	1	204393933	204418296	18	0.2479	NEUTRAL	NA	1	PIK3C2B
TCGA.AG.A00C.01A	1	204434300	204913390	19	0.1786	NEUTRAL	NA	4	"LRRN2,MDM4,NFASC,PIK3C2B"
TCGA.AA.3518	1	204449433	235421934	11213	0.0157	NEUTRAL	NA	210	Too-Many
TCGA.AY.5543	1	204457335	220970592	6061	0.0132	NEUTRAL	NA	109	Too-Many
TCGA.AG.3909.01A	1	204494594	204518234	12	-0.3728	NEUTRAL	NA	1	MDM4
TCGA.CK.5914.01A	1	204494594	204589696	14	-0.2614	NEUTRAL	NA	2	"LRRN2,MDM4"
TCGA.AG.3909.01A	1	204586948	204955038	23	0.1304	NEUTRAL	NA	2	"LRRN2,NFASC"
TCGA.AA.3979	1	204694685	234791720	10897	0.0148	NEUTRAL	NA	204	Too-Many
TCGA.CK.5914.01A	1	204913390	204955038	22	0.3231	NEUTRAL	NA	1	NFASC
TCGA.AG.A00C.01A	1	204919593	205277662	86	-0.2195	NEUTRAL	NA	7	"CNTN2,DSTYK,NFASC,NUAK2,RBBP5,TMCC2,TMEM81"
TCGA.AG.3909.01A	1	204956499	205027002	11	-0.4118	NEUTRAL	NA	2	"CNTN2,NFASC"
TCGA.CK.5914.01A	1	204956499	205042165	29	-0.2181	NEUTRAL	NA	2	"CNTN2,NFASC"
TCGA.AA.A010.01A	1	205052671	205180362	27	0.1887	NEUTRAL	NA	3	"DSTYK,RBBP5,TMEM81"
TCGA.AG.A011.01A	1	205083870	229462507	1462	-0.3316	NEUTRAL	NA	168	Too-Many
TCGA.AA.A00N.01A	1	205180362	205496895	35	-0.2193	NEUTRAL	NA	6	"CDK18,DSTYK,KLHDC8A,LEMD1,NUAK2,TMCC2"
TCGA.CK.5914.01A	1	205197671	205816970	90	-0.0767	NEUTRAL	NA	12	"CDK18,ELK4,KLHDC8A,LEMD1,MFSD4,NUAK2,NUCKS1,PM20D1,RAB29,SLC41A1,SLC45A3,TMCC2"
TCGA.EI.6506	1	205208792	205281254	30	-0.4128	NEUTRAL	NA	2	"NUAK2,TMCC2"
TCGA.AA.A00F.01A	1	205240196	205498431	28	0.1812	NEUTRAL	NA	5	"CDK18,KLHDC8A,LEMD1,NUAK2,TMCC2"
TCGA.AG.A00C.01A	1	205280794	205569515	31	0.0384	NEUTRAL	NA	5	"CDK18,KLHDC8A,LEMD1,MFSD4,NUAK2"
TCGA.EI.6506	1	205292419	249170710	15826	0.1511	NEUTRAL	NA	300	Too-Many
TCGA.AG.3909.01A	1	205498088	205585642	15	0.1348	NEUTRAL	NA	3	"CDK18,ELK4,MFSD4"
TCGA.AA.A00F.01A	1	205499346	205566857	11	-0.1573	NEUTRAL	NA	2	"CDK18,MFSD4"
TCGA.AG.4009.01A	1	205499703	205797731	40	-0.2886	NEUTRAL	NA	8	"CDK18,ELK4,MFSD4,NUCKS1,PM20D1,RAB29,SLC41A1,SLC45A3"
TCGA.AA.A01Q.01A	1	205548842	206631970	90	0.1679	NEUTRAL	NA	16	"AVPR1B,C1orf186,CTSE,ELK4,FAM72A,FAM72C,MFSD4,NUCKS1,PM20D1,RAB29,SLC26A9,SLC41A1,SLC45A3,SRGAP2,SRGAP2B,SRGAP2C"
TCGA.AA.A00F.01A	1	205568217	205741559	21	0.1695	NEUTRAL	NA	5	"ELK4,MFSD4,NUCKS1,RAB29,SLC45A3"
TCGA.AG.3906.01A	1	205687371	205764434	14	0.1577	NEUTRAL	NA	3	"NUCKS1,RAB29,SLC41A1"
TCGA.AA.A00N.01A	1	205743929	205811745	17	0.2282	NEUTRAL	NA	3	"PM20D1,RAB29,SLC41A1"
TCGA.AA.A00F.01A	1	205743929	206658275	71	-0.1442	NEUTRAL	NA	13	"AVPR1B,C1orf186,CTSE,FAM72A,FAM72C,IKBKE,PM20D1,RAB29,SLC26A9,SLC41A1,SRGAP2,SRGAP2B,SRGAP2C"
TCGA.AG.A00C.01A	1	205743929	206772300	106	-0.1107	NEUTRAL	NA	15	"AVPR1B,C1orf186,CTSE,EIF2D,FAM72A,FAM72C,IKBKE,PM20D1,RAB29,RASSF5,SLC26A9,SLC41A1,SRGAP2,SRGAP2B,SRGAP2C"
TCGA.AG.3909.01A	1	205760609	205799359	11	-0.2006	NEUTRAL	NA	2	"PM20D1,SLC41A1"
TCGA.AG.3906.01A	1	205765994	205779158	6	-0.2208	NEUTRAL	NA	1	SLC41A1
TCGA.AG.3906.01A	1	205797731	205812748	8	0.2647	NEUTRAL	NA	1	PM20D1
TCGA.AG.4009.01A	1	205799359	207642999	207	0.0374	NEUTRAL	NA	29	"AVPR1B,C1orf116,C1orf186,C4BPA,C4BPB,CD55,CR2,CTSE,DYRK3,EIF2D,FAM72A,FAM72C,FCAMR,FCMR,IKBKE,IL10,IL19,IL20,IL24,MAPKAPK2,PFKFB2,PIGR,PM20D1,RASSF5,SLC26A9,SRGAP2,SRGAP2B,SRGAP2C,YOD1"
TCGA.AG.3906.01A	1	205813176	212560193	503	-0.0177	NEUTRAL	NA	57	"AVPR1B,C1orf116,C1orf186,C1orf74,C4BPA,C4BPB,CAMK1G,CD34,CD46,CD55,CR1,CR1L,CR2,CTSE,DIEXF,DTL,DYRK3,EIF2D,FAM72A,FAM72C,FCAMR,FCMR,G0S2,HHAT,HSD11B1,IKBKE,IL10,IL19,IL20,IL24,INTS7,IRF6,KCNH1,LAMB3,LPGAT1,MAPKAPK2,MIR205HG,NEK2,PFKFB2,PIGR,PLXNA2,PM20D1,PPP2R5A,RASSF5,RCOR3,RD3,SERTAD4,SLC26A9,SLC30A1,SRGAP2,SRGAP2B,SRGAP2C,SYT14,TMEM206,TRAF3IP3,TRAF5,YOD1"
TCGA.AG.A01W.01A	1	206127659	208003275	83	-0.2493	NEUTRAL	NA	30	"AVPR1B,C1orf116,C1orf186,C4BPA,C4BPB,CD46,CD55,CR1,CR1L,CR2,CTSE,DYRK3,EIF2D,FAM72A,FAM72C,FCAMR,FCMR,IKBKE,IL10,IL19,IL20,IL24,MAPKAPK2,PFKFB2,PIGR,RASSF5,SRGAP2,SRGAP2B,SRGAP2C,YOD1"
TCGA.CK.5914.01A	1	206139257	206240063	8	-0.2342	NEUTRAL	NA	4	"AVPR1B,C1orf186,FAM72A,FAM72C"
TCGA.A6.3808.01A	1	206589200	214637921	580	0.2325	NEUTRAL	NA	62	"ANGEL2,ATF3,BATF3,C1orf116,C1orf74,C4BPA,C4BPB,CAMK1G,CD34,CD46,CD55,CR1,CR1L,CR2,DIEXF,DTL,DYRK3,EIF2D,FAM71A,FCAMR,FCMR,FLVCR1,G0S2,HHAT,HSD11B1,IKBKE,IL10,IL19,IL20,IL24,INTS7,IRF6,KCNH1,LAMB3,LPGAT1,MAPKAPK2,MIR205HG,NEK2,NENF,NSL1,PFKFB2,PIGR,PLXNA2,PPP2R5A,PROX1,PTPN14,RASSF5,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA45,SRGAP2,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,VASH2,YOD1"
TCGA.CK.5914.01A	1	206628225	206778715	40	0.0563	NEUTRAL	NA	4	"EIF2D,IKBKE,RASSF5,SRGAP2"
TCGA.AA.A01Q.01A	1	206646523	206941929	53	-0.2737	NEUTRAL	NA	6	"DYRK3,EIF2D,IKBKE,IL10,MAPKAPK2,RASSF5"
TCGA.AA.A00Q.01A	1	206646523	214637921	503	-0.4457	NEUTRAL	NA	61	"ANGEL2,ATF3,BATF3,C1orf116,C1orf74,C4BPA,C4BPB,CAMK1G,CD34,CD46,CD55,CR1,CR1L,CR2,DIEXF,DTL,DYRK3,EIF2D,FAM71A,FCAMR,FCMR,FLVCR1,G0S2,HHAT,HSD11B1,IKBKE,IL10,IL19,IL20,IL24,INTS7,IRF6,KCNH1,LAMB3,LPGAT1,MAPKAPK2,MIR205HG,NEK2,NENF,NSL1,PFKFB2,PIGR,PLXNA2,PPP2R5A,PROX1,PTPN14,RASSF5,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA45,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,VASH2,YOD1"
TCGA.AG.3909.01A	1	206647634	206766949	24	-0.3655	NEUTRAL	NA	3	"EIF2D,IKBKE,RASSF5"
TCGA.AA.A00N.01A	1	206661221	206766949	17	-0.0176	NEUTRAL	NA	3	"EIF2D,IKBKE,RASSF5"
TCGA.AA.A00F.01A	1	206661221	206902025	33	0.1747	NEUTRAL	NA	5	"DYRK3,EIF2D,IKBKE,MAPKAPK2,RASSF5"
TCGA.AG.3909.01A	1	206821892	207073582	27	0.2877	NEUTRAL	NA	6	"DYRK3,IL10,IL19,IL20,IL24,MAPKAPK2"
TCGA.CK.5914.01A	1	206858528	206903289	5	0.0961	NEUTRAL	NA	1	MAPKAPK2
TCGA.AG.A00C.01A	1	206858528	207073582	26	-0.2575	NEUTRAL	NA	5	"IL10,IL19,IL20,IL24,MAPKAPK2"
TCGA.AA.A00F.01A	1	206902341	207072611	23	-0.1751	NEUTRAL	NA	5	"IL10,IL19,IL20,IL24,MAPKAPK2"
TCGA.AG.3611.01A	1	206941929	207532909	82	0.3057	NEUTRAL	NA	13	"C1orf116,C4BPA,C4BPB,CD55,FCAMR,FCMR,IL10,IL19,IL20,IL24,PFKFB2,PIGR,YOD1"
TCGA.AA.A02K.01A	1	206941930	210573766	286	-0.0381	NEUTRAL	NA	31	"C1orf116,C1orf74,C4BPA,C4BPB,CAMK1G,CD34,CD46,CD55,CR1,CR1L,CR2,DIEXF,FCAMR,FCMR,G0S2,HHAT,HSD11B1,IL10,IL19,IL20,IL24,IRF6,LAMB3,MIR205HG,PFKFB2,PIGR,PLXNA2,SERTAD4,SYT14,TRAF3IP3,YOD1"
TCGA.AA.A01Q.01A	1	206943108	209605437	153	0.1074	NEUTRAL	NA	20	"C1orf116,C4BPA,C4BPB,CD34,CD46,CD55,CR1,CR1L,CR2,FCAMR,FCMR,IL10,IL19,IL20,IL24,MIR205HG,PFKFB2,PIGR,PLXNA2,YOD1"
TCGA.AA.A00F.01A	1	207073582	207095095	10	0.246	NEUTRAL	NA	2	"FCMR,IL24"
TCGA.AG.A00C.01A	1	207074791	207095095	9	0.3296	NEUTRAL	NA	2	"FCMR,IL24"
TCGA.CK.5914.01A	1	207074791	207104780	11	-0.2978	NEUTRAL	NA	3	"FCMR,IL24,PIGR"
TCGA.AA.A00F.01A	1	207103609	207317839	46	-0.1564	NEUTRAL	NA	7	"C1orf116,C4BPA,C4BPB,FCAMR,PFKFB2,PIGR,YOD1"
TCGA.AG.A00C.01A	1	207103609	207317839	53	-0.2446	NEUTRAL	NA	7	"C1orf116,C4BPA,C4BPB,FCAMR,PFKFB2,PIGR,YOD1"
TCGA.AA.3850	1	207186794	214939860	3010	0.08195	NEUTRAL	NA	50	"ANGEL2,ATF3,BATF3,C1orf116,C1orf74,C4BPA,C4BPB,CAMK1G,CD34,CD46,CD55,CENPF,CR1,CR1L,CR2,DIEXF,DTL,FAM71A,FLVCR1,G0S2,HHAT,HSD11B1,INTS7,IRF6,KCNH1,LAMB3,LPGAT1,MIR205HG,NEK2,NENF,NSL1,PFKFB2,PLXNA2,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA45,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,VASH2,YOD1"
TCGA.AA.3941	1	207191163	207656049	133	0.0432	NEUTRAL	NA	7	"C1orf116,C4BPA,C4BPB,CD55,CR2,PFKFB2,YOD1"
TCGA.AA.A00N.01A	1	207222355	207242722	12	-0.0947	NEUTRAL	NA	2	"PFKFB2,YOD1"
TCGA.AG.3909.01A	1	207243578	207317839	22	0.2582	NEUTRAL	NA	3	"C4BPA,C4BPB,PFKFB2"
TCGA.AA.A010.01A	1	207286334	207761971	51	-0.2312	NEUTRAL	NA	4	"C4BPA,CD55,CR1,CR2"
TCGA.CK.5912	1	207319569	245636409	14298	-0.1168	NEUTRAL	NA	205	Too-Many
TCGA.AG.A008.01A	1	207495521	207653260	24	0.3555	NEUTRAL	NA	2	"CD55,CR2"
TCGA.AG.A00C.01A	1	207495521	207700057	30	0.2328	NEUTRAL	NA	3	"CD55,CR1,CR2"
TCGA.AA.A00F.01A	1	207495521	208073134	51	0.1681	NEUTRAL	NA	6	"CD34,CD46,CD55,CR1,CR1L,CR2"
TCGA.CK.5914.01A	1	207509991	207658788	20	-0.1214	NEUTRAL	NA	2	"CD55,CR2"
TCGA.AG.3611.01A	1	207627702	207782598	17	-0.0179	NEUTRAL	NA	2	"CR1,CR2"
TCGA.AG.4009.01A	1	207644094	208073134	74	-0.2718	NEUTRAL	NA	5	"CD34,CD46,CR1,CR1L,CR2"
TCGA.AA.A01C.01A	1	207658788	215939975	448	-0.2597	NEUTRAL	NA	47	"ANGEL2,ATF3,BATF3,C1orf74,CAMK1G,CD34,CD46,CENPF,CR1,CR1L,CR2,DIEXF,DTL,FAM71A,FLVCR1,G0S2,HHAT,HSD11B1,INTS7,IRF6,KCNH1,KCNK2,KCTD3,LAMB3,LPGAT1,MIR205HG,NEK2,NENF,NSL1,PLXNA2,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA45,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,USH2A,VASH2"
TCGA.AG.A008.01A	1	207658788	244868827	2101	0.0856	NEUTRAL	NA	200	Too-Many
TCGA.AG.3909.01A	1	207696927	207789871	19	0.2776	NEUTRAL	NA	1	CR1
TCGA.AG.A00C.01A	1	207715549	207793188	20	-0.2045	NEUTRAL	NA	1	CR1
TCGA.CK.5914.01A	1	207760691	207925519	25	0.1227	NEUTRAL	NA	3	"CD46,CR1,CR1L"
TCGA.AA.A010.01A	1	207780551	207958896	33	0.312	NEUTRAL	NA	3	"CD46,CR1,CR1L"
TCGA.AA.A00N.01A	1	207789871	208073134	45	-0.465	NEUTRAL	NA	4	"CD34,CD46,CR1,CR1L"
TCGA.AG.3909.01A	1	207791378	208073134	40	-0.3152	NEUTRAL	NA	4	"CD34,CD46,CR1,CR1L"
TCGA.AG.3611.01A	1	207793188	207975742	17	0.3739	NEUTRAL	NA	3	"CD46,CR1,CR1L"
TCGA.AG.A00C.01A	1	207795228	208073134	37	0.0723	NEUTRAL	NA	4	"CD34,CD46,CR1,CR1L"
TCGA.CK.5914.01A	1	207940888	208225652	38	0.1408	NEUTRAL	NA	3	"CD34,CD46,PLXNA2"
TCGA.AG.3611.01A	1	207990643	208073134	9	-0.0221	NEUTRAL	NA	1	CD34
TCGA.AG.A01W.01A	1	208012853	210625203	152	0.2189	NEUTRAL	NA	14	"C1orf74,CAMK1G,CD34,DIEXF,G0S2,HHAT,HSD11B1,IRF6,LAMB3,MIR205HG,PLXNA2,SERTAD4,SYT14,TRAF3IP3"
TCGA.AH.6544	1	208068578	249198691	15102	0.2435	NEUTRAL	NA	259	Too-Many
TCGA.D5.6922	1	208140163	209750057	769	-0.4382	NEUTRAL	NA	2	"MIR205HG,PLXNA2"
TCGA.AG.4009.01A	1	208200549	209811827	64	0.2972	NEUTRAL	NA	4	"CAMK1G,LAMB3,MIR205HG,PLXNA2"
TCGA.AG.A00C.01A	1	208200549	209956179	85	-0.2469	NEUTRAL	NA	8	"C1orf74,CAMK1G,G0S2,HSD11B1,LAMB3,MIR205HG,PLXNA2,TRAF3IP3"
TCGA.AA.A00F.01A	1	208200549	210334077	109	-0.0899	NEUTRAL	NA	11	"C1orf74,CAMK1G,DIEXF,G0S2,HSD11B1,IRF6,LAMB3,MIR205HG,PLXNA2,SYT14,TRAF3IP3"
TCGA.AG.3611.01A	1	208200549	216270373	419	0.3557	NEUTRAL	NA	42	"ANGEL2,ATF3,BATF3,C1orf74,CAMK1G,CENPF,DIEXF,DTL,FAM71A,FLVCR1,G0S2,HHAT,HSD11B1,INTS7,IRF6,KCNH1,KCNK2,KCTD3,LAMB3,LPGAT1,MIR205HG,NEK2,NENF,NSL1,PLXNA2,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA45,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,USH2A,VASH2"
TCGA.AA.A010.01A	1	208266110	209784763	19	0.1768	NEUTRAL	NA	3	"CAMK1G,MIR205HG,PLXNA2"
TCGA.AG.A01L.01A	1	208315626	209849013	40	-0.4291	NEUTRAL	NA	5	"CAMK1G,G0S2,LAMB3,MIR205HG,PLXNA2"
TCGA.CK.5914.01A	1	208383578	210560760	91	-0.1804	NEUTRAL	NA	13	"C1orf74,CAMK1G,DIEXF,G0S2,HHAT,HSD11B1,IRF6,LAMB3,MIR205HG,PLXNA2,SERTAD4,SYT14,TRAF3IP3"
TCGA.AG.3726	1	208445799	208455178	17	0.2386	NEUTRAL	NA	0	None
TCGA.AA.3844	1	208450275	209511827	488	-0.2441	NEUTRAL	NA	0	None
TCGA.AA.3941	1	208450275	209723577	584	-0.0255	NEUTRAL	NA	1	MIR205HG
TCGA.D5.6923	1	208455178	249198691	14885	0.1416	NEUTRAL	NA	257	Too-Many
TCGA.AA.3811	1	208464140	209460514	462	-0.2234	NEUTRAL	NA	0	None
TCGA.AA.3870	1	208603188	227078591	6566	-0.0018	NEUTRAL	NA	95	"ACBD3,AIDA,ANGEL2,ATF3,BATF3,BPNT1,BROX,C1orf115,C1orf74,C1orf95,CAMK1G,CAPN2,CAPN8,CCDC185,CENPF,CNIH3,CNIH4,DEGS1,DIEXF,DISP1,DNAH14,DTL,DUSP10,ENAH,EPHX1,EPRS,ESRRG,FAM177B,FAM71A,FBXO28,FLVCR1,G0S2,GPATCH2,H3F3A,HHAT,HHIPL2,HLX,HSD11B1,IARS2,INTS7,IRF6,ITPKB,KCNH1,KCNK2,KCTD3,LAMB3,LBR,LEFTY1,LEFTY2,LIN9,LPGAT1,LYPLAL1,MARC1,MARC2,MARK1,MIA3,MIR205HG,MIXL1,NEK2,NENF,NSL1,NVL,PARP1,PPP2R5A,PROX1,PSEN2,PTPN14,PYCR2,RAB3GAP2,RCOR3,RD3,RPS6KC1,RRP15,SDE2,SERTAD4,SLC30A1,SLC30A10,SMYD2,SPATA17,SPATA45,SRP9,SUSD4,SYT14,TAF1A,TATDN3,TGFB2,TLR5,TMEM206,TMEM63A,TP53BP2,TRAF3IP3,TRAF5,USH2A,VASH2,WDR26"
TCGA.AA.3549	1	208675413	209316629	288	-0.0668	NEUTRAL	NA	0	None
TCGA.CM.6170	1	208764834	249198691	14746	-0.2099	NEUTRAL	NA	257	Too-Many
TCGA.AG.3727	1	208859766	209411677	224	-0.0459	NEUTRAL	NA	0	None
TCGA.AA.3811	1	209460922	215023410	2099	0.0092	NEUTRAL	NA	38	"ANGEL2,ATF3,BATF3,C1orf74,CAMK1G,CENPF,DIEXF,DTL,FAM71A,FLVCR1,G0S2,HHAT,HSD11B1,INTS7,IRF6,KCNH1,LAMB3,LPGAT1,MIR205HG,NEK2,NENF,NSL1,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA45,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,VASH2"
TCGA.AA.3844	1	209512372	212700617	1188	0.0056	NEUTRAL	NA	24	"C1orf74,CAMK1G,DIEXF,DTL,G0S2,HHAT,HSD11B1,INTS7,IRF6,KCNH1,LAMB3,LPGAT1,MIR205HG,NEK2,NENF,PPP2R5A,RCOR3,RD3,SERTAD4,SLC30A1,SYT14,TMEM206,TRAF3IP3,TRAF5"
TCGA.CI.6622	1	209544262	249198691	14400	0	NEUTRAL	NA	257	Too-Many
TCGA.AG.3909.01A	1	209602621	209806355	31	-0.3919	NEUTRAL	NA	3	"CAMK1G,LAMB3,MIR205HG"
TCGA.AG.3726	1	209651534	249198691	14378	0	NEUTRAL	NA	256	Too-Many
TCGA.D5.6922	1	209752964	210093493	188	0.2319	NEUTRAL	NA	8	"C1orf74,CAMK1G,DIEXF,G0S2,HSD11B1,IRF6,LAMB3,TRAF3IP3"
TCGA.D5.6533	1	209767698	228224152	6385	0.1394	NEUTRAL	NA	102	Too-Many
TCGA.AA.A00N.01A	1	209768293	209907648	39	0.333	NEUTRAL	NA	4	"CAMK1G,G0S2,HSD11B1,LAMB3"
TCGA.AA.A01Q.01A	1	209796296	218458612	418	0.1052	NEUTRAL	NA	42	"ANGEL2,ATF3,BATF3,C1orf74,CENPF,DIEXF,DTL,ESRRG,FAM71A,FLVCR1,G0S2,GPATCH2,HHAT,HSD11B1,INTS7,IRF6,KCNH1,KCNK2,KCTD3,LAMB3,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA17,SPATA45,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,USH2A,VASH2"
TCGA.AA.3488	1	209802893	232350821	7899	0.2977	NEUTRAL	NA	142	Too-Many
TCGA.AG.3909.01A	1	209807750	209956179	24	0.1321	NEUTRAL	NA	5	"C1orf74,G0S2,HSD11B1,LAMB3,TRAF3IP3"
TCGA.DY.A1H8	1	209816370	210718623	387	-0.0142	NEUTRAL	NA	10	"C1orf74,DIEXF,G0S2,HHAT,HSD11B1,IRF6,LAMB3,SERTAD4,SYT14,TRAF3IP3"
TCGA.AG.4009.01A	1	209823262	214637921	263	-0.1354	NEUTRAL	NA	35	"ANGEL2,ATF3,BATF3,C1orf74,DIEXF,DTL,FAM71A,FLVCR1,G0S2,HHAT,HSD11B1,INTS7,IRF6,KCNH1,LAMB3,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA45,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,VASH2"
TCGA.AA.A010.01A	1	209878231	209907648	5	-0.4324	NEUTRAL	NA	1	HSD11B1
TCGA.AG.A01L.01A	1	209878231	212538530	155	-0.0829	NEUTRAL	NA	19	"C1orf74,DIEXF,DTL,HHAT,HSD11B1,INTS7,IRF6,KCNH1,LPGAT1,NEK2,PPP2R5A,RCOR3,RD3,SERTAD4,SLC30A1,SYT14,TMEM206,TRAF3IP3,TRAF5"
TCGA.AA.A00N.01A	1	209936368	210536178	45	-0.2319	NEUTRAL	NA	7	"C1orf74,DIEXF,HHAT,IRF6,SERTAD4,SYT14,TRAF3IP3"
TCGA.AG.3909.01A	1	209961724	210334077	25	-0.2954	NEUTRAL	NA	3	"DIEXF,IRF6,SYT14"
TCGA.AG.A00C.01A	1	209961724	210414886	28	0.1076	NEUTRAL	NA	4	"DIEXF,IRF6,SERTAD4,SYT14"
TCGA.D5.6922	1	210093570	210291475	40	-0.3008	NEUTRAL	NA	1	SYT14
TCGA.AA.3941	1	210247815	211356282	474	0.1714	NEUTRAL	NA	4	"HHAT,KCNH1,SERTAD4,SYT14"
TCGA.D5.6922	1	210293332	210677190	175	0.2667	NEUTRAL	NA	3	"HHAT,SERTAD4,SYT14"
TCGA.AA.A00F.01A	1	210411274	210536178	5	0.2227	NEUTRAL	NA	2	"HHAT,SERTAD4"
TCGA.AG.A00C.01A	1	210522269	211263857	20	-0.4081	NEUTRAL	NA	2	"HHAT,KCNH1"
TCGA.AA.A010.01A	1	210522269	213068270	154	0.0503	NEUTRAL	NA	20	"ATF3,BATF3,DTL,FAM71A,FLVCR1,HHAT,INTS7,KCNH1,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,RCOR3,RD3,SLC30A1,SPATA45,TATDN3,TMEM206,TRAF5"
TCGA.AA.A00F.01A	1	210560760	211256075	17	-0.3271	NEUTRAL	NA	2	"HHAT,KCNH1"
TCGA.AA.A02K.01A	1	210577757	210761211	5	-0.3357	NEUTRAL	NA	1	HHAT
TCGA.NH.A6GA	1	210605288	210612527	10	-0.1888	NEUTRAL	NA	1	HHAT
TCGA.AG.A01W.01A	1	210626810	211191462	41	-0.1621	NEUTRAL	NA	2	"HHAT,KCNH1"
TCGA.D5.6922	1	210679084	210780546	65	-0.4831	NEUTRAL	NA	1	HHAT
TCGA.D5.6922	1	210782951	211242923	191	0.2541	NEUTRAL	NA	2	"HHAT,KCNH1"
TCGA.AA.A02K.01A	1	210796834	212560187	106	0.0901	NEUTRAL	NA	12	"DTL,HHAT,INTS7,KCNH1,LPGAT1,NEK2,PPP2R5A,RCOR3,RD3,SLC30A1,TMEM206,TRAF5"
TCGA.AA.3982	1	211146115	212115068	274	0.2278	NEUTRAL	NA	8	"INTS7,KCNH1,LPGAT1,NEK2,RCOR3,RD3,SLC30A1,TRAF5"
TCGA.AG.A01W.01A	1	211228413	213968094	121	0.2384	NEUTRAL	NA	22	"ANGEL2,ATF3,BATF3,DTL,FAM71A,FLVCR1,INTS7,KCNH1,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,RCOR3,RD3,RPS6KC1,SLC30A1,SPATA45,TATDN3,TMEM206,TRAF5,VASH2"
TCGA.D5.6922	1	211248542	213666888	698	-0.4194	NEUTRAL	NA	22	"ANGEL2,ATF3,BATF3,DTL,FAM71A,FLVCR1,INTS7,KCNH1,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,RCOR3,RD3,RPS6KC1,SLC30A1,SPATA45,TATDN3,TMEM206,TRAF5,VASH2"
TCGA.AA.A00N.01A	1	211263857	212161211	58	0.0244	NEUTRAL	NA	8	"INTS7,KCNH1,LPGAT1,NEK2,RCOR3,RD3,SLC30A1,TRAF5"
TCGA.AG.3909.01A	1	211263857	212161211	57	-0.182	NEUTRAL	NA	8	"INTS7,KCNH1,LPGAT1,NEK2,RCOR3,RD3,SLC30A1,TRAF5"
TCGA.CK.5914.01A	1	211263857	212220443	69	-0.2262	NEUTRAL	NA	9	"DTL,INTS7,KCNH1,LPGAT1,NEK2,RCOR3,RD3,SLC30A1,TRAF5"
TCGA.AA.A00F.01A	1	211263857	214637921	196	0.0075	NEUTRAL	NA	25	"ANGEL2,ATF3,BATF3,DTL,FAM71A,FLVCR1,INTS7,KCNH1,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SLC30A1,SMYD2,SPATA45,TATDN3,TMEM206,TRAF5,VASH2"
TCGA.AG.A00C.01A	1	211276799	212161211	56	0.0012	NEUTRAL	NA	8	"INTS7,KCNH1,LPGAT1,NEK2,RCOR3,RD3,SLC30A1,TRAF5"
TCGA.AA.A01F.01A	1	211433422	247875089	1748	0.1255	NEUTRAL	NA	205	Too-Many
TCGA.D5.5539	1	211479552	211832964	135	-0.5122	NEUTRAL	NA	5	"NEK2,RCOR3,RD3,SLC30A1,TRAF5"
TCGA.BM.6198	1	211647335	235778720	8683	0.05875	NEUTRAL	NA	146	Too-Many
TCGA.AA.A01T	1	211663260	215010658	1212	0.3481	NEUTRAL	NA	23	"ANGEL2,ATF3,BATF3,CENPF,DTL,FAM71A,FLVCR1,INTS7,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,PROX1,PTPN14,RD3,RPS6KC1,SLC30A1,SMYD2,SPATA45,TATDN3,TMEM206,VASH2"
TCGA.AA.3549	1	211671899	214974846	1197	0.0358	NEUTRAL	NA	22	"ANGEL2,ATF3,BATF3,CENPF,DTL,FAM71A,FLVCR1,INTS7,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,PROX1,PTPN14,RPS6KC1,SLC30A1,SMYD2,SPATA45,TATDN3,TMEM206,VASH2"
TCGA.AA.3982	1	212116601	212277387	36	-0.2385	NEUTRAL	NA	2	"DTL,INTS7"
TCGA.AA.3678	1	212183521	249198691	13412	0.0092	NEUTRAL	NA	238	Too-Many
TCGA.AG.3909.01A	1	212208655	212560193	32	-0.1215	NEUTRAL	NA	4	"DTL,INTS7,PPP2R5A,TMEM206"
TCGA.AG.A00C.01A	1	212208655	212587985	34	-0.0798	NEUTRAL	NA	4	"DTL,INTS7,PPP2R5A,TMEM206"
TCGA.CK.5914.01A	1	212236161	212587985	30	0.1935	NEUTRAL	NA	3	"DTL,PPP2R5A,TMEM206"
TCGA.AA.3982	1	212277603	213418057	336	0.2636	NEUTRAL	NA	14	"ANGEL2,ATF3,BATF3,DTL,FAM71A,FLVCR1,NENF,NSL1,PPP2R5A,RPS6KC1,SPATA45,TATDN3,TMEM206,VASH2"
TCGA.AF.4110	1	212353334	212490303	52	-0.5085	NEUTRAL	NA	1	PPP2R5A
TCGA.AF.4110	1	212500432	213756151	390	0.2468	NEUTRAL	NA	13	"ANGEL2,ATF3,BATF3,FAM71A,FLVCR1,NENF,NSL1,PPP2R5A,RPS6KC1,SPATA45,TATDN3,TMEM206,VASH2"
TCGA.AG.A01Y	1	212526287	234838564	8134	-0.0102	NEUTRAL	NA	133	Too-Many
TCGA.AG.A01L.01A	1	212558569	226044572	614	-0.1282	NEUTRAL	NA	61	"AIDA,ANGEL2,ATF3,BATF3,BPNT1,BROX,C1orf115,CAPN2,CAPN8,CCDC185,CENPF,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,ENAH,EPHX1,EPRS,ESRRG,FAM177B,FAM71A,FBXO28,FLVCR1,GPATCH2,HHIPL2,HLX,IARS2,KCNK2,KCTD3,LBR,LYPLAL1,MARC1,MARC2,MARK1,MIA3,NENF,NSL1,NVL,PROX1,PTPN14,RAB3GAP2,RPS6KC1,RRP15,SLC30A10,SMYD2,SPATA17,SPATA45,SRP9,SUSD4,TAF1A,TATDN3,TGFB2,TLR5,TMEM206,TMEM63A,TP53BP2,USH2A,VASH2,WDR26"
TCGA.AG.A00C.01A	1	212615837	213045973	31	0.2993	NEUTRAL	NA	8	"ATF3,BATF3,FAM71A,FLVCR1,NENF,NSL1,SPATA45,TATDN3"
TCGA.AA.A02K.01A	1	212617630	228362352	922	0.108	NEUTRAL	NA	86	"ACBD3,ADCK3,AIDA,ANGEL2,ARF1,ATF3,BATF3,BPNT1,BROX,C1orf115,C1orf35,C1orf95,CAPN2,CAPN8,CCDC185,CDC42BPA,CENPF,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,ENAH,EPHX1,EPRS,ESRRG,FAM177B,FAM71A,FBXO28,FLVCR1,GJC2,GPATCH2,GUK1,H3F3A,HHIPL2,HLX,IARS2,IBA57,ITPKB,JMJD4,KCNK2,KCTD3,LBR,LEFTY1,LEFTY2,LIN9,LYPLAL1,MARC1,MARC2,MARK1,MIA3,MIXL1,MRPL55,NENF,NSL1,NVL,PARP1,PROX1,PRSS38,PSEN2,PTPN14,PYCR2,RAB3GAP2,RPS6KC1,RRP15,SDE2,SLC30A10,SMYD2,SNAP47,SPATA17,SPATA45,SRP9,SUSD4,TAF1A,TATDN3,TGFB2,TLR5,TMEM63A,TP53BP2,USH2A,VASH2,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AA.3844	1	212702286	212730333	16	-0.2601	NEUTRAL	NA	0	None
TCGA.AA.3844	1	212734713	213106177	137	0.225	NEUTRAL	NA	7	"ATF3,BATF3,FAM71A,FLVCR1,NSL1,SPATA45,TATDN3"
TCGA.AA.A00N.01A	1	212964822	214637921	87	0.127	NEUTRAL	NA	10	"ANGEL2,FLVCR1,NSL1,PROX1,PTPN14,RPS6KC1,SMYD2,SPATA45,TATDN3,VASH2"
TCGA.AF.3914.01A	1	212964822	215179182	104	0.1232	NEUTRAL	NA	12	"ANGEL2,CENPF,FLVCR1,KCNK2,NSL1,PROX1,PTPN14,RPS6KC1,SMYD2,SPATA45,TATDN3,VASH2"
TCGA.AG.3909.01A	1	212964822	215408174	111	-0.1336	NEUTRAL	NA	12	"ANGEL2,CENPF,FLVCR1,KCNK2,NSL1,PROX1,PTPN14,RPS6KC1,SMYD2,SPATA45,TATDN3,VASH2"
TCGA.CK.5914.01A	1	213003497	215956032	142	-0.0753	NEUTRAL	NA	12	"ANGEL2,CENPF,FLVCR1,KCNK2,KCTD3,PROX1,PTPN14,RPS6KC1,SMYD2,SPATA45,USH2A,VASH2"
TCGA.AG.A00C.01A	1	213056650	214637921	67	-0.1208	NEUTRAL	NA	7	"ANGEL2,FLVCR1,PROX1,PTPN14,RPS6KC1,SMYD2,VASH2"
TCGA.AA.3844	1	213107799	214132289	362	-0.0989	NEUTRAL	NA	3	"ANGEL2,RPS6KC1,VASH2"
TCGA.AA.A010.01A	1	213161813	214500928	36	-0.104	NEUTRAL	NA	5	"ANGEL2,PROX1,RPS6KC1,SMYD2,VASH2"
TCGA.AG.3906.01A	1	213161813	222761758	366	-0.0698	NEUTRAL	NA	29	"ANGEL2,BPNT1,C1orf115,CENPF,DUSP10,EPRS,ESRRG,GPATCH2,HHIPL2,HLX,IARS2,KCNK2,KCTD3,LYPLAL1,MARC1,MARC2,MARK1,PROX1,PTPN14,RAB3GAP2,RPS6KC1,RRP15,SLC30A10,SMYD2,SPATA17,TAF1A,TGFB2,USH2A,VASH2"
TCGA.AA.3930.01A	1	213161813	237663974	1663	0.0034	NEUTRAL	NA	141	Too-Many
TCGA.AA.3941	1	213241067	213527241	35	-0.1173	NEUTRAL	NA	1	RPS6KC1
TCGA.AA.3982	1	213420894	213527241	18	-0.4948	NEUTRAL	NA	1	RPS6KC1
TCGA.AA.3941	1	213530099	213937036	195	0.265	NEUTRAL	NA	0	None
TCGA.AA.3982	1	213530099	213953548	201	0.1565	NEUTRAL	NA	0	None
TCGA.AZ.6599	1	213618376	218138480	1887	0.0384	NEUTRAL	NA	10	"CENPF,ESRRG,GPATCH2,KCNK2,KCTD3,PROX1,PTPN14,SMYD2,SPATA17,USH2A"
TCGA.D5.6922	1	213673690	231356300	6218	0.2401	NEUTRAL	NA	103	Too-Many
TCGA.AA.3941	1	213938194	214128907	99	-0.0668	NEUTRAL	NA	0	None
TCGA.AA.3982	1	213958417	214140992	103	-0.2544	NEUTRAL	NA	0	None
TCGA.AZ.6598	1	213974733	249198691	12819	-0.0059	NEUTRAL	NA	223	Too-Many
TCGA.AG.A01W.01A	1	213981290	213999575	4	-0.2847	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	214006599	214312848	28	0.3761	NEUTRAL	NA	1	PROX1
TCGA.AF.4110	1	214022485	215281113	573	0.2294	NEUTRAL	NA	5	"CENPF,KCNK2,PROX1,PTPN14,SMYD2"
TCGA.DM.A1HB	1	214081497	219793051	2213	-0.0262	NEUTRAL	NA	13	"CENPF,ESRRG,GPATCH2,KCNK2,KCTD3,LYPLAL1,PROX1,PTPN14,RRP15,SMYD2,SPATA17,TGFB2,USH2A"
TCGA.AA.3561	1	214099715	214103670	4	-0.2633	NEUTRAL	NA	0	None
TCGA.AA.3844	1	214135972	214939860	343	-0.037	NEUTRAL	NA	4	"CENPF,PROX1,PTPN14,SMYD2"
TCGA.AA.3982	1	214145705	214938358	337	0.1016	NEUTRAL	NA	4	"CENPF,PROX1,PTPN14,SMYD2"
TCGA.AA.3941	1	214145705	214939860	339	0.2441	NEUTRAL	NA	4	"CENPF,PROX1,PTPN14,SMYD2"
TCGA.AG.A01W.01A	1	214336997	220861103	220	0.2162	NEUTRAL	NA	18	"BPNT1,CENPF,EPRS,ESRRG,GPATCH2,IARS2,KCNK2,KCTD3,LYPLAL1,MARK1,PTPN14,RAB3GAP2,RRP15,SLC30A10,SMYD2,SPATA17,TGFB2,USH2A"
TCGA.F4.6459	1	214581018	249198691	12554	-0.0267	NEUTRAL	NA	221	Too-Many
TCGA.AA.A00Q.01A	1	214787061	214821981	14	0.2196	NEUTRAL	NA	1	CENPF
TCGA.AA.A00N.01A	1	214802347	215777427	35	-0.2981	NEUTRAL	NA	3	"CENPF,KCNK2,KCTD3"
TCGA.AA.A00F.01A	1	214803830	214811167	3	-0.2814	NEUTRAL	NA	1	CENPF
TCGA.AG.A00C.01A	1	214803830	215408174	21	0.0103	NEUTRAL	NA	2	"CENPF,KCNK2"
TCGA.AA.A00F.01A	1	214813285	215259664	12	-0.0109	NEUTRAL	NA	2	"CENPF,KCNK2"
TCGA.AA.A00Q.01A	1	214825004	231858230	875	-0.3406	NEUTRAL	NA	107	Too-Many
TCGA.AA.3861.01A	1	214830318	246939800	1967	0.059	NEUTRAL	NA	165	Too-Many
TCGA.AG.A00Y.01A	1	214832141	220170387	157	-0.1604	NEUTRAL	NA	12	"CENPF,EPRS,ESRRG,GPATCH2,KCNK2,KCTD3,LYPLAL1,RRP15,SLC30A10,SPATA17,TGFB2,USH2A"
TCGA.AA.3862.01A	1	214836887	216221829	68	-0.1835	NEUTRAL	NA	4	"CENPF,KCNK2,KCTD3,USH2A"
TCGA.AA.3982	1	214939195	222457285	2817	-0.2385	NEUTRAL	NA	20	"BPNT1,C1orf115,DUSP10,EPRS,ESRRG,GPATCH2,HLX,IARS2,KCNK2,KCTD3,LYPLAL1,MARC1,MARC2,MARK1,RAB3GAP2,RRP15,SLC30A10,SPATA17,TGFB2,USH2A"
TCGA.AA.3850	1	214941594	215391488	193	-0.38425	NEUTRAL	NA	1	KCNK2
TCGA.AA.3941	1	214941594	220068843	1979	-0.3043	NEUTRAL	NA	9	"ESRRG,GPATCH2,KCNK2,KCTD3,LYPLAL1,RRP15,SPATA17,TGFB2,USH2A"
TCGA.AA.3844	1	214941594	222434690	2814	-0.3	NEUTRAL	NA	20	"BPNT1,C1orf115,DUSP10,EPRS,ESRRG,GPATCH2,HLX,IARS2,KCNK2,KCTD3,LYPLAL1,MARC1,MARC2,MARK1,RAB3GAP2,RRP15,SLC30A10,SPATA17,TGFB2,USH2A"
TCGA.AA.A01T	1	215011367	249198691	12348	0.0413	NEUTRAL	NA	219	Too-Many
TCGA.AA.3811	1	215024395	217507838	1043	-0.3522	NEUTRAL	NA	4	"ESRRG,KCNK2,KCTD3,USH2A"
TCGA.AG.4021	1	215217699	215362460	57	0.288	NEUTRAL	NA	1	KCNK2
TCGA.AF.4110	1	215290543	215438658	55	-0.4763	NEUTRAL	NA	1	KCNK2
TCGA.AA.A00F.01A	1	215297926	215408174	5	-0.3164	NEUTRAL	NA	1	KCNK2
TCGA.AF.3914.01A	1	215297926	228336405	691	0.1745	NEUTRAL	NA	69	"ACBD3,ADCK3,AIDA,ARF1,BPNT1,BROX,C1orf115,C1orf35,C1orf95,CAPN2,CAPN8,CCDC185,CDC42BPA,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,ENAH,EPHX1,EPRS,ESRRG,FAM177B,FBXO28,GPATCH2,GUK1,H3F3A,HHIPL2,HLX,IARS2,ITPKB,JMJD4,KCNK2,KCTD3,LBR,LEFTY1,LEFTY2,LIN9,LYPLAL1,MARC1,MARC2,MARK1,MIA3,MIXL1,MRPL55,NVL,PARP1,PRSS38,PSEN2,PYCR2,RAB3GAP2,RRP15,SDE2,SLC30A10,SNAP47,SPATA17,SRP9,SUSD4,TAF1A,TGFB2,TLR5,TMEM63A,TP53BP2,USH2A,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AG.4021	1	215367247	249198691	12178	0.0446	NEUTRAL	NA	219	Too-Many
TCGA.AF.4110	1	215441029	218866366	1323	0.2334	NEUTRAL	NA	7	"ESRRG,GPATCH2,KCTD3,RRP15,SPATA17,TGFB2,USH2A"
TCGA.AA.3850	1	215540562	219813321	1637	-0.41455	NEUTRAL	NA	8	"ESRRG,GPATCH2,KCTD3,LYPLAL1,RRP15,SPATA17,TGFB2,USH2A"
TCGA.AA.A00F.01A	1	215747099	215752315	6	0.2686	NEUTRAL	NA	1	KCTD3
TCGA.AA.A00F.01A	1	215753201	219384797	121	-0.262	NEUTRAL	NA	8	"ESRRG,GPATCH2,KCTD3,LYPLAL1,RRP15,SPATA17,TGFB2,USH2A"
TCGA.AA.A010.01A	1	215768676	215959975	29	0.3471	NEUTRAL	NA	2	"KCTD3,USH2A"
TCGA.AG.3909.01A	1	215768676	219347191	117	0.0415	NEUTRAL	NA	8	"ESRRG,GPATCH2,KCTD3,LYPLAL1,RRP15,SPATA17,TGFB2,USH2A"
TCGA.AG.A00C.01A	1	215768676	220835103	234	-0.1482	NEUTRAL	NA	14	"BPNT1,EPRS,ESRRG,GPATCH2,IARS2,KCTD3,LYPLAL1,MARK1,RAB3GAP2,RRP15,SLC30A10,SPATA17,TGFB2,USH2A"
TCGA.AG.4009.01A	1	215775173	228246636	652	-0.1951	NEUTRAL	NA	64	"ACBD3,ADCK3,AIDA,BPNT1,BROX,C1orf115,C1orf95,CAPN2,CAPN8,CCDC185,CDC42BPA,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,ENAH,EPHX1,EPRS,ESRRG,FAM177B,FBXO28,GPATCH2,H3F3A,HHIPL2,HLX,IARS2,ITPKB,JMJD4,KCTD3,LBR,LEFTY1,LEFTY2,LIN9,LYPLAL1,MARC1,MARC2,MARK1,MIA3,MIXL1,NVL,PARP1,PRSS38,PSEN2,PYCR2,RAB3GAP2,RRP15,SDE2,SLC30A10,SNAP47,SPATA17,SRP9,SUSD4,TAF1A,TGFB2,TLR5,TMEM63A,TP53BP2,USH2A,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AA.3509.01A	1	215802108	215931925	14	0.3751	NEUTRAL	NA	1	USH2A
TCGA.AA.3549	1	215816687	216836050	413	-0.0224	NEUTRAL	NA	2	"ESRRG,USH2A"
TCGA.AA.A01C.01A	1	215953168	217804185	70	0.1805	NEUTRAL	NA	3	"ESRRG,GPATCH2,USH2A"
TCGA.AA.A010.01A	1	215963369	216850396	57	-0.3353	NEUTRAL	NA	2	"ESRRG,USH2A"
TCGA.AG.3575	1	216006631	238193074	8209	-0.0042	NEUTRAL	NA	133	Too-Many
TCGA.AG.3611.01A	1	216348533	216495174	13	0.024	NEUTRAL	NA	1	USH2A
TCGA.CK.5914.01A	1	216896562	220267548	85	0.0252	NEUTRAL	NA	10	"BPNT1,EPRS,ESRRG,GPATCH2,IARS2,LYPLAL1,RRP15,SLC30A10,SPATA17,TGFB2"
TCGA.AA.A010.01A	1	216896562	222791406	199	0.2043	NEUTRAL	NA	19	"BPNT1,C1orf115,DUSP10,EPRS,ESRRG,GPATCH2,HHIPL2,HLX,IARS2,LYPLAL1,MARC1,MARC2,MARK1,RAB3GAP2,RRP15,SLC30A10,SPATA17,TAF1A,TGFB2"
TCGA.CA.5254	1	217003295	241209839	9057	-0.005	NEUTRAL	NA	136	Too-Many
TCGA.AA.3549	1	217294329	217740347	200	-0.0491	NEUTRAL	NA	2	"ESRRG,GPATCH2"
TCGA.A6.2671	1	217340450	226640676	3001	-0.0269	NEUTRAL	NA	50	"ACBD3,AIDA,BPNT1,BROX,C1orf115,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,ENAH,EPHX1,EPRS,FAM177B,FBXO28,GPATCH2,H3F3A,HHIPL2,HLX,IARS2,LBR,LEFTY1,LEFTY2,LIN9,LYPLAL1,MARC1,MARC2,MARK1,MIA3,MIXL1,NVL,PARP1,PYCR2,RAB3GAP2,RRP15,SDE2,SLC30A10,SPATA17,SRP9,SUSD4,TAF1A,TGFB2,TLR5,TMEM63A,TP53BP2,WDR26"
TCGA.AA.3977	1	217385076	236732775	6806	0.083	NEUTRAL	NA	126	Too-Many
TCGA.AA.3811	1	217515337	222457285	1739	-0.216	NEUTRAL	NA	16	"BPNT1,C1orf115,DUSP10,EPRS,GPATCH2,HLX,IARS2,LYPLAL1,MARC1,MARC2,MARK1,RAB3GAP2,RRP15,SLC30A10,SPATA17,TGFB2"
TCGA.CM.6163	1	217668329	217750247	15	-0.2774	NEUTRAL	NA	1	GPATCH2
TCGA.CM.6163	1	217750695	228962426	3449	0.3478	NEUTRAL	NA	76	"ACBD3,ADCK3,AIDA,ARF1,BPNT1,BROX,BTNL10,C1orf115,C1orf35,C1orf95,CAPN2,CAPN8,CCDC185,CDC42BPA,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,ENAH,EPHX1,EPRS,FAM177B,FBXO28,GJC2,GPATCH2,GUK1,H3F3A,HHIPL2,HIST3H2A,HIST3H2BB,HIST3H3,HLX,IARS2,IBA57,ITPKB,JMJD4,LBR,LEFTY1,LEFTY2,LIN9,LYPLAL1,MARC1,MARC2,MARK1,MIA3,MIXL1,MRPL55,NVL,OBSCN,PARP1,PRSS38,PSEN2,PYCR2,RAB3GAP2,RHOU,RNF187,RRP15,SDE2,SLC30A10,SNAP47,SPATA17,SRP9,SUSD4,TAF1A,TGFB2,TLR5,TMEM63A,TP53BP2,TRIM11,TRIM17,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AZ.4684.01A	1	217804653	222731951	178	0.21	NEUTRAL	NA	17	"BPNT1,C1orf115,DUSP10,EPRS,HHIPL2,HLX,IARS2,LYPLAL1,MARC1,MARC2,MARK1,RAB3GAP2,RRP15,SLC30A10,SPATA17,TAF1A,TGFB2"
TCGA.A6.3808.01A	1	217804653	227174127	624	-0.1046	NEUTRAL	NA	53	"ACBD3,ADCK3,AIDA,BPNT1,BROX,C1orf115,C1orf95,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,ENAH,EPHX1,EPRS,FAM177B,FBXO28,H3F3A,HHIPL2,HLX,IARS2,ITPKB,LBR,LEFTY1,LEFTY2,LIN9,LYPLAL1,MARC1,MARC2,MARK1,MIA3,MIXL1,NVL,PARP1,PSEN2,PYCR2,RAB3GAP2,RRP15,SDE2,SLC30A10,SPATA17,SRP9,SUSD4,TAF1A,TGFB2,TLR5,TMEM63A,TP53BP2,WDR26"
TCGA.AA.A01C.01A	1	217804653	249210793	1769	-0.2651	NEUTRAL	NA	215	Too-Many
TCGA.AZ.6599	1	218149465	238579227	7448	-0.0094	NEUTRAL	NA	129	Too-Many
TCGA.AA.3549	1	218237293	218249399	8	0.1282	NEUTRAL	NA	0	None
TCGA.AA.3549	1	218263869	221906601	1273	-0.0077	NEUTRAL	NA	14	"BPNT1,C1orf115,DUSP10,EPRS,HLX,IARS2,LYPLAL1,MARC1,MARC2,MARK1,RAB3GAP2,RRP15,SLC30A10,TGFB2"
TCGA.AA.A01Q.01A	1	218475588	220100310	18	-0.4802	NEUTRAL	NA	4	"LYPLAL1,RRP15,SLC30A10,TGFB2"
TCGA.AA.A00N.01A	1	218475588	220195647	45	0.2976	NEUTRAL	NA	5	"EPRS,LYPLAL1,RRP15,SLC30A10,TGFB2"
TCGA.AF.4110	1	219345241	219688344	127	-0.0552	NEUTRAL	NA	1	LYPLAL1
TCGA.AF.4110	1	219688633	220826944	379	0.202	NEUTRAL	NA	6	"BPNT1,EPRS,IARS2,MARK1,RAB3GAP2,SLC30A10"
TCGA.AA.3850	1	219821066	220032317	95	-0.05905	NEUTRAL	NA	0	None
TCGA.DM.A1HB	1	219821066	223687989	1264	0.0127	NEUTRAL	NA	21	"AIDA,BPNT1,BROX,C1orf115,CCDC185,DISP1,DUSP10,EPRS,FAM177B,HHIPL2,HLX,IARS2,MARC1,MARC2,MARK1,MIA3,RAB3GAP2,SLC30A10,SUSD4,TAF1A,TLR5"
TCGA.AA.3850	1	220069859	221000272	311	0.14995	NEUTRAL	NA	9	"BPNT1,C1orf115,EPRS,IARS2,MARC1,MARC2,MARK1,RAB3GAP2,SLC30A10"
TCGA.AG.3909.01A	1	220101121	220191723	21	0.0955	NEUTRAL	NA	2	"EPRS,SLC30A10"
TCGA.AA.A00F.01A	1	220101121	220208227	30	-0.0694	NEUTRAL	NA	2	"EPRS,SLC30A10"
TCGA.AA.A01Q.01A	1	220101121	222711943	127	0.1756	NEUTRAL	NA	12	"BPNT1,C1orf115,DUSP10,EPRS,HHIPL2,HLX,IARS2,MARC1,MARC2,MARK1,RAB3GAP2,SLC30A10"
TCGA.AG.A00Y.01A	1	220174452	247737397	1672	0.2969	NEUTRAL	NA	167	Too-Many
TCGA.AA.3509.01A	1	220195647	220332646	47	0.0754	NEUTRAL	NA	4	"BPNT1,EPRS,IARS2,RAB3GAP2"
TCGA.AA.A00D.01A	1	220206792	220287619	12	-0.033	NEUTRAL	NA	3	"BPNT1,EPRS,IARS2"
TCGA.AA.A00F.01A	1	220213478	220284116	10	0.365	NEUTRAL	NA	3	"BPNT1,EPRS,IARS2"
TCGA.AA.A00F.01A	1	220287619	225594304	235	-0.0376	NEUTRAL	NA	29	"AIDA,BROX,C1orf115,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,FAM177B,FBXO28,HHIPL2,HLX,IARS2,LBR,MARC1,MARC2,MARK1,MIA3,NVL,RAB3GAP2,SUSD4,TAF1A,TLR5,TP53BP2,WDR26"
TCGA.AA.A00D.01A	1	220291147	232002199	690	-0.4463	NEUTRAL	NA	94	"ABCB10,ACBD3,ACTA1,ADCK3,AGT,AIDA,ARF1,ARV1,BROX,BTNL10,C1orf115,C1orf131,C1orf198,C1orf35,C1orf95,CAPN2,CAPN8,CAPN9,CCDC185,CCSAP,CDC42BPA,CNIH3,CNIH4,COG2,DEGS1,DISC1,DISP1,DNAH14,DUSP10,EGLN1,ENAH,EPHX1,EXOC8,FAM177B,FAM89A,FBXO28,GALNT2,GJC2,GNPAT,GUK1,H3F3A,HHIPL2,HIST3H2A,HIST3H2BB,HIST3H3,HLX,IARS2,IBA57,ITPKB,JMJD4,LBR,LEFTY1,LEFTY2,LIN9,LOC149373,MARC1,MARC2,MARK1,MIA3,MIXL1,MRPL55,NUP133,NVL,OBSCN,PARP1,PGBD5,PRSS38,PSEN2,PYCR2,RAB3GAP2,RAB4A,RHOU,RNF187,SDE2,SNAP47,SPHAR,SPRTN,SRP9,SUSD4,TAF1A,TAF5L,TLR5,TMEM63A,TP53BP2,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AG.3909.01A	1	220291440	220835103	61	0.0648	NEUTRAL	NA	3	"IARS2,MARK1,RAB3GAP2"
TCGA.CK.5914.01A	1	220298532	220344196	22	0.0216	NEUTRAL	NA	2	"IARS2,RAB3GAP2"
TCGA.CK.5914.01A	1	220345209	220791605	30	0.3342	NEUTRAL	NA	2	"MARK1,RAB3GAP2"
TCGA.AA.3941	1	220488187	220850115	122	0.0387	NEUTRAL	NA	1	MARK1
TCGA.CK.5914.01A	1	220804339	220928272	13	-0.0173	NEUTRAL	NA	3	"C1orf115,MARC2,MARK1"
TCGA.AA.A00N.01A	1	220804339	221057508	29	-0.3185	NEUTRAL	NA	5	"C1orf115,HLX,MARC1,MARC2,MARK1"
TCGA.AA.3941	1	220863370	220988489	79	0.3639	NEUTRAL	NA	3	"C1orf115,MARC1,MARC2"
TCGA.AG.A01W.01A	1	220864680	220873022	6	-0.4638	NEUTRAL	NA	1	C1orf115
TCGA.AG.A01W.01A	1	220885471	221222959	44	0.1418	NEUTRAL	NA	3	"HLX,MARC1,MARC2"
TCGA.CK.5914.01A	1	220960236	222761758	33	0.2429	NEUTRAL	NA	5	"DUSP10,HHIPL2,HLX,MARC1,TAF1A"
TCGA.AG.A00C.01A	1	220964791	222761758	31	-0.0847	NEUTRAL	NA	5	"DUSP10,HHIPL2,HLX,MARC1,TAF1A"
TCGA.AY.5543	1	220973201	249198691	10037	-0.0031	NEUTRAL	NA	202	Too-Many
TCGA.AA.3941	1	220988936	221829783	286	-0.0997	NEUTRAL	NA	1	HLX
TCGA.AA.3850	1	221007642	221829783	279	-0.13025	NEUTRAL	NA	1	HLX
TCGA.AG.3909.01A	1	221057508	222860902	50	0.0351	NEUTRAL	NA	6	"AIDA,DUSP10,HHIPL2,HLX,MIA3,TAF1A"
TCGA.AG.A01W.01A	1	221242299	222009757	45	0.1233	NEUTRAL	NA	1	DUSP10
TCGA.AF.4110	1	221486558	221808377	114	0.2493	NEUTRAL	NA	0	None
TCGA.AA.3850	1	221869957	223172694	386	-0.10705	NEUTRAL	NA	8	"AIDA,BROX,DISP1,DUSP10,FAM177B,HHIPL2,MIA3,TAF1A"
TCGA.AA.3941	1	221871464	223172694	385	0.0482	NEUTRAL	NA	8	"AIDA,BROX,DISP1,DUSP10,FAM177B,HHIPL2,MIA3,TAF1A"
TCGA.AA.3864	1	221871464	236736563	5201	0.1116	NEUTRAL	NA	111	Too-Many
TCGA.AG.A01W.01A	1	222011600	222035113	12	-0.3017	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	1	222038432	222388383	19	0.2873	NEUTRAL	NA	0	None
TCGA.AF.4110	1	222338758	222947867	121	0.2151	NEUTRAL	NA	6	"AIDA,BROX,FAM177B,HHIPL2,MIA3,TAF1A"
TCGA.AG.A01W.01A	1	222407439	222522310	11	-0.4952	NEUTRAL	NA	0	None
TCGA.AA.3844	1	222442393	247785142	9278	-0.0165	NEUTRAL	NA	159	Too-Many
TCGA.AA.3811	1	222484251	237282671	5292	0.0851	NEUTRAL	NA	114	Too-Many
TCGA.AA.3982	1	222484251	238305507	5769	0.1526	NEUTRAL	NA	115	Too-Many
TCGA.AG.A01W.01A	1	222529618	225249116	277	0.1146	NEUTRAL	NA	20	"AIDA,BROX,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,FAM177B,FBXO28,HHIPL2,MIA3,NVL,SUSD4,TAF1A,TLR5,TP53BP2,WDR26"
TCGA.AA.A01Q.01A	1	222731951	222867482	19	0.1054	NEUTRAL	NA	3	"AIDA,MIA3,TAF1A"
TCGA.AA.3509.01A	1	222753064	222823617	16	0.3571	NEUTRAL	NA	2	"MIA3,TAF1A"
TCGA.AZ.4684.01A	1	222753064	222823617	16	0.1338	NEUTRAL	NA	2	"MIA3,TAF1A"
TCGA.CK.5914.01A	1	222806398	222827526	9	-0.4771	NEUTRAL	NA	1	MIA3
TCGA.AG.3906.01A	1	222806398	223936684	64	-0.1325	NEUTRAL	NA	10	"AIDA,BROX,CAPN2,CAPN8,CCDC185,DISP1,FAM177B,MIA3,SUSD4,TLR5"
TCGA.AA.3693	1	222807012	235701313	4552	0.0464	NEUTRAL	NA	100	"ABCB10,ACBD3,ACTA1,ADCK3,AGT,AIDA,ARF1,ARID4B,ARV1,B3GALNT2,BROX,BTNL10,C1orf131,C1orf198,C1orf35,C1orf95,CAPN2,CAPN8,CAPN9,CCDC185,CCSAP,CDC42BPA,CNIH3,CNIH4,COA6,COG2,DEGS1,DISC1,DISP1,DNAH14,EGLN1,ENAH,EPHX1,EXOC8,FAM177B,FAM89A,FBXO28,GALNT2,GGPS1,GJC2,GNPAT,GUK1,H3F3A,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,IRF2BP2,ITPKB,JMJD4,KCNK1,KIAA1804,LBR,LEFTY1,LEFTY2,LIN9,LOC149373,MAP10,MIA3,MIXL1,MRPL55,NTPCR,NUP133,NVL,OBSCN,PARP1,PCNXL2,PGBD5,PRSS38,PSEN2,PYCR2,RAB4A,RBM34,RHOU,RNF187,SDE2,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,SRP9,SUSD4,TAF5L,TARBP1,TBCE,TLR5,TMEM63A,TOMM20,TP53BP2,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AA.A010.01A	1	222817769	222860902	21	-0.091	NEUTRAL	NA	2	"AIDA,MIA3"
TCGA.AG.A00C.01A	1	222818857	225590958	156	0.003	NEUTRAL	NA	19	"AIDA,BROX,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,FAM177B,FBXO28,LBR,MIA3,NVL,SUSD4,TLR5,TP53BP2,WDR26"
TCGA.AA.3848	1	222820638	235701313	4551	0.0728	NEUTRAL	NA	100	"ABCB10,ACBD3,ACTA1,ADCK3,AGT,AIDA,ARF1,ARID4B,ARV1,B3GALNT2,BROX,BTNL10,C1orf131,C1orf198,C1orf35,C1orf95,CAPN2,CAPN8,CAPN9,CCDC185,CCSAP,CDC42BPA,CNIH3,CNIH4,COA6,COG2,DEGS1,DISC1,DISP1,DNAH14,EGLN1,ENAH,EPHX1,EXOC8,FAM177B,FAM89A,FBXO28,GALNT2,GGPS1,GJC2,GNPAT,GUK1,H3F3A,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,IRF2BP2,ITPKB,JMJD4,KCNK1,KIAA1804,LBR,LEFTY1,LEFTY2,LIN9,LOC149373,MAP10,MIA3,MIXL1,MRPL55,NTPCR,NUP133,NVL,OBSCN,PARP1,PCNXL2,PGBD5,PRSS38,PSEN2,PYCR2,RAB4A,RBM34,RHOU,RNF187,SDE2,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,SRP9,SUSD4,TAF5L,TARBP1,TBCE,TLR5,TMEM63A,TOMM20,TP53BP2,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.CK.5914.01A	1	222827969	223566790	56	-0.0473	NEUTRAL	NA	8	"AIDA,BROX,CCDC185,DISP1,FAM177B,MIA3,SUSD4,TLR5"
TCGA.AZ.4684.01A	1	222837300	224927013	166	0.0542	NEUTRAL	NA	17	"AIDA,BROX,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,FAM177B,FBXO28,MIA3,NVL,SUSD4,TLR5,TP53BP2,WDR26"
TCGA.AA.3509.01A	1	222837300	225140347	167	0.3477	NEUTRAL	NA	18	"AIDA,BROX,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,FAM177B,FBXO28,MIA3,NVL,SUSD4,TLR5,TP53BP2,WDR26"
TCGA.AA.A01Q.01A	1	222876434	223283775	26	-0.4855	NEUTRAL	NA	5	"AIDA,BROX,DISP1,FAM177B,TLR5"
TCGA.AA.A010.01A	1	222902906	223283775	19	0.008	NEUTRAL	NA	4	"BROX,DISP1,FAM177B,TLR5"
TCGA.AG.3909.01A	1	222905917	223905398	27	0.0702	NEUTRAL	NA	8	"BROX,CAPN2,CAPN8,CCDC185,DISP1,FAM177B,SUSD4,TLR5"
TCGA.AG.3891.01A	1	222923212	227083085	270	0.0617	NEUTRAL	NA	32	"ACBD3,C1orf95,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,ENAH,EPHX1,FAM177B,FBXO28,H3F3A,ITPKB,LBR,LEFTY1,LEFTY2,LIN9,MIXL1,NVL,PARP1,PSEN2,PYCR2,SDE2,SRP9,SUSD4,TLR5,TMEM63A,TP53BP2,WDR26"
TCGA.AF.4110	1	222990652	223096434	18	-0.3074	NEUTRAL	NA	1	DISP1
TCGA.AF.4110	1	223104828	226676735	1018	0.0905	NEUTRAL	NA	28	"ACBD3,CAPN2,CAPN8,CCDC185,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,ENAH,EPHX1,FBXO28,H3F3A,LBR,LEFTY1,LEFTY2,LIN9,MIXL1,NVL,PARP1,PYCR2,SDE2,SRP9,SUSD4,TLR5,TMEM63A,TP53BP2,WDR26"
TCGA.AA.3941	1	223177573	237365647	5184	0.3537	NEUTRAL	NA	108	Too-Many
TCGA.AA.3850	1	223177573	237395981	5200	0.24715	NEUTRAL	NA	108	Too-Many
TCGA.DY.A1DG	1	223309627	235273193	4391	-0.0091	NEUTRAL	NA	90	"ABCB10,ACBD3,ACTA1,ADCK3,AGT,ARF1,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,C1orf95,CAPN2,CAPN8,CAPN9,CCDC185,CCSAP,CDC42BPA,CNIH3,CNIH4,COA6,COG2,DEGS1,DISC1,DNAH14,EGLN1,ENAH,EPHX1,EXOC8,FAM89A,FBXO28,GALNT2,GJC2,GNPAT,GUK1,H3F3A,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,IRF2BP2,ITPKB,JMJD4,KCNK1,KIAA1804,LBR,LEFTY1,LEFTY2,LIN9,LOC149373,MAP10,MIXL1,MRPL55,NTPCR,NUP133,NVL,OBSCN,PARP1,PCNXL2,PGBD5,PRSS38,PSEN2,PYCR2,RAB4A,RHOU,RNF187,SDE2,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,SRP9,SUSD4,TAF5L,TARBP1,TLR5,TMEM63A,TOMM20,TP53BP2,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AA.A01Q.01A	1	223396664	223954003	28	-0.1335	NEUTRAL	NA	4	"CAPN2,CAPN8,CCDC185,SUSD4"
TCGA.DM.A1HB	1	223840373	226678467	773	0.0491	NEUTRAL	NA	24	"ACBD3,CAPN2,CAPN8,CNIH3,CNIH4,DEGS1,DNAH14,ENAH,EPHX1,FBXO28,H3F3A,LBR,LEFTY1,LEFTY2,LIN9,MIXL1,NVL,PARP1,PYCR2,SDE2,SRP9,TMEM63A,TP53BP2,WDR26"
TCGA.CK.5914.01A	1	223905398	223949832	13	-0.3473	NEUTRAL	NA	1	CAPN2
TCGA.AG.3906.01A	1	223939640	223968479	15	0.1601	NEUTRAL	NA	2	"CAPN2,TP53BP2"
TCGA.AG.3909.01A	1	223951783	225602906	93	0.0043	NEUTRAL	NA	10	"CAPN2,CNIH3,CNIH4,DEGS1,DNAH14,FBXO28,LBR,NVL,TP53BP2,WDR26"
TCGA.AA.A010.01A	1	223957478	224008872	23	-0.2306	NEUTRAL	NA	2	"CAPN2,TP53BP2"
TCGA.AA.A01Q.01A	1	223957478	225965577	102	0.2066	NEUTRAL	NA	12	"CAPN2,CNIH3,CNIH4,DEGS1,DNAH14,ENAH,FBXO28,LBR,NVL,SRP9,TP53BP2,WDR26"
TCGA.AG.3906.01A	1	223971777	224008872	17	-0.1649	NEUTRAL	NA	1	TP53BP2
TCGA.AY.6196	1	224240312	249102522	8974	0.3422	NEUTRAL	NA	183	Too-Many
TCGA.DY.A1H8	1	224261127	231628291	2414	-0.0038	NEUTRAL	NA	71	"ABCB10,ACBD3,ACTA1,ADCK3,AGT,ARF1,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,C1orf95,CAPN9,CCSAP,CDC42BPA,CNIH3,CNIH4,COG2,DEGS1,DNAH14,EGLN1,ENAH,EPHX1,EXOC8,FAM89A,FBXO28,GALNT2,GJC2,GNPAT,GUK1,H3F3A,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,ITPKB,JMJD4,LBR,LEFTY1,LEFTY2,LIN9,LOC149373,MIXL1,MRPL55,NUP133,NVL,OBSCN,PARP1,PGBD5,PRSS38,PSEN2,PYCR2,RAB4A,RHOU,RNF187,SDE2,SNAP47,SPHAR,SPRTN,SRP9,TAF5L,TMEM63A,TRIM11,TRIM17,TRIM67,TTC13,URB2,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.CK.5914.01A	1	224318146	224379997	8	-0.4973	NEUTRAL	NA	2	"DEGS1,FBXO28"
TCGA.AG.3906.01A	1	224318146	224592083	41	0.2014	NEUTRAL	NA	5	"CNIH4,DEGS1,FBXO28,NVL,WDR26"
TCGA.CK.5914.01A	1	224415259	225446846	91	0.0582	NEUTRAL	NA	5	"CNIH3,CNIH4,DNAH14,NVL,WDR26"
TCGA.AG.3611.01A	1	224517703	234613889	552	0.3419	NEUTRAL	NA	80	"ABCB10,ACBD3,ACTA1,ADCK3,AGT,ARF1,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,C1orf95,CAPN9,CCSAP,CDC42BPA,CNIH3,CNIH4,COA6,COG2,DISC1,DNAH14,EGLN1,ENAH,EPHX1,EXOC8,FAM89A,GALNT2,GJC2,GNPAT,GUK1,H3F3A,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,ITPKB,JMJD4,KCNK1,KIAA1804,LBR,LEFTY1,LEFTY2,LIN9,LOC149373,MAP10,MIXL1,MRPL55,NTPCR,NUP133,NVL,OBSCN,PARP1,PCNXL2,PGBD5,PRSS38,PSEN2,PYCR2,RAB4A,RHOU,RNF187,SDE2,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,SRP9,TAF5L,TARBP1,TMEM63A,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AA.A010.01A	1	224548145	224592083	12	-0.4237	NEUTRAL	NA	2	"CNIH4,WDR26"
TCGA.AA.A010.01A	1	224804831	225594304	92	0.2502	NEUTRAL	NA	3	"CNIH3,DNAH14,LBR"
TCGA.AG.3906.01A	1	224804831	227149040	162	0.0664	NEUTRAL	NA	20	"ACBD3,ADCK3,C1orf95,CNIH3,DNAH14,ENAH,EPHX1,H3F3A,ITPKB,LBR,LEFTY1,LEFTY2,LIN9,MIXL1,PARP1,PSEN2,PYCR2,SDE2,SRP9,TMEM63A"
TCGA.AA.A00L.01A	1	224927013	225600109	12	0.0539	NEUTRAL	NA	3	"CNIH3,DNAH14,LBR"
TCGA.AH.6549.01A	1	225140347	226065044	142	-0.3646	NEUTRAL	NA	6	"DNAH14,ENAH,EPHX1,LBR,SRP9,TMEM63A"
TCGA.A6.2681	1	225170290	225392622	49	-0.0994	NEUTRAL	NA	1	DNAH14
TCGA.G4.6307	1	225208246	227111520	534	-0.4299	NEUTRAL	NA	18	"ACBD3,C1orf95,DNAH14,ENAH,EPHX1,H3F3A,ITPKB,LBR,LEFTY1,LEFTY2,LIN9,MIXL1,PARP1,PSEN2,PYCR2,SDE2,SRP9,TMEM63A"
TCGA.A6.2681	1	225418455	249198691	8735	0.3436	NEUTRAL	NA	180	Too-Many
TCGA.CK.5914.01A	1	225477538	225552467	21	0.2407	NEUTRAL	NA	1	DNAH14
TCGA.AA.3509.01A	1	225490831	225512388	8	0.1974	NEUTRAL	NA	1	DNAH14
TCGA.AZ.4684.01A	1	225490831	225512388	8	-0.0475	NEUTRAL	NA	1	DNAH14
TCGA.CK.5914.01A	1	225555479	225611582	22	-0.4808	NEUTRAL	NA	2	"DNAH14,LBR"
TCGA.AA.3509.01A	1	225562338	225590958	10	0.2391	NEUTRAL	NA	2	"DNAH14,LBR"
TCGA.AZ.4684.01A	1	225562338	225590958	10	0.096	NEUTRAL	NA	2	"DNAH14,LBR"
TCGA.AA.A00N.01A	1	225569063	225590958	7	0.1241	NEUTRAL	NA	2	"DNAH14,LBR"
TCGA.AG.A023.01A	1	225590958	249142402	1412	0.2316	NEUTRAL	NA	178	Too-Many
TCGA.AA.3509.01A	1	225592054	225607377	9	-0.4517	NEUTRAL	NA	1	LBR
TCGA.AA.A00L.01A	1	225602906	226034694	32	-0.5041	NEUTRAL	NA	5	"ENAH,EPHX1,LBR,SRP9,TMEM63A"
TCGA.AZ.4684.01A	1	225609779	227220974	168	0.0844	NEUTRAL	NA	19	"ACBD3,ADCK3,C1orf95,CDC42BPA,ENAH,EPHX1,H3F3A,ITPKB,LBR,LEFTY1,LEFTY2,LIN9,MIXL1,PARP1,PSEN2,PYCR2,SDE2,SRP9,TMEM63A"
TCGA.AG.3909.01A	1	225685409	226050413	37	0.1042	NEUTRAL	NA	4	"ENAH,EPHX1,SRP9,TMEM63A"
TCGA.AG.A00C.01A	1	225685409	226053535	38	-0.1175	NEUTRAL	NA	4	"ENAH,EPHX1,SRP9,TMEM63A"
TCGA.AA.A010.01A	1	225685409	226186857	67	0.1021	NEUTRAL	NA	8	"ENAH,EPHX1,LEFTY1,LEFTY2,PYCR2,SDE2,SRP9,TMEM63A"
TCGA.AA.A00F.01A	1	225685409	236416697	653	0.0077	NEUTRAL	NA	86	"ABCB10,ACBD3,ACTA1,ADCK3,AGT,ARF1,ARID4B,ARV1,B3GALNT2,BTNL10,C1orf131,C1orf198,C1orf35,C1orf95,CAPN9,CCSAP,CDC42BPA,COA6,COG2,DISC1,EGLN1,ENAH,EPHX1,ERO1LB,EXOC8,FAM89A,GALNT2,GGPS1,GJC2,GNG4,GNPAT,GPR137B,GUK1,H3F3A,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,IRF2BP2,ITPKB,JMJD4,KCNK1,KIAA1804,LEFTY1,LEFTY2,LIN9,LOC149373,LYST,MAP10,MIXL1,MRPL55,NID1,NTPCR,NUP133,OBSCN,PARP1,PCNXL2,PGBD5,PRSS38,PSEN2,PYCR2,RAB4A,RBM34,RHOU,RNF187,SDE2,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,SRP9,TAF5L,TARBP1,TBCE,TMEM63A,TOMM20,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A,ZNF678"
TCGA.AA.A00N.01A	1	225685998	225700287	6	0.3645	NEUTRAL	NA	1	ENAH
TCGA.AA.A00N.01A	1	225718199	226053535	30	0.3551	NEUTRAL	NA	4	"ENAH,EPHX1,SRP9,TMEM63A"
TCGA.CK.5914.01A	1	225742588	226053535	27	-0.1199	NEUTRAL	NA	4	"ENAH,EPHX1,SRP9,TMEM63A"
TCGA.AA.A01Q.01A	1	225970940	226034694	11	-0.2619	NEUTRAL	NA	3	"EPHX1,SRP9,TMEM63A"
TCGA.AA.A00L.01A	1	226036133	226074448	21	-0.0286	NEUTRAL	NA	2	"LEFTY1,TMEM63A"
TCGA.AG.A01L.01A	1	226046859	226127062	22	0.1968	NEUTRAL	NA	4	"LEFTY1,LEFTY2,PYCR2,TMEM63A"
TCGA.AG.3909.01A	1	226053535	226076478	11	-0.4919	NEUTRAL	NA	2	"LEFTY1,TMEM63A"
TCGA.CK.5914.01A	1	226054232	226259005	30	-0.5144	NEUTRAL	NA	6	"H3F3A,LEFTY1,LEFTY2,PYCR2,SDE2,TMEM63A"
TCGA.AG.A00C.01A	1	226054232	226488804	50	0.3142	NEUTRAL	NA	9	"ACBD3,H3F3A,LEFTY1,LEFTY2,LIN9,MIXL1,PYCR2,SDE2,TMEM63A"
TCGA.AF.A56K	1	226061065	249198691	8539	-0.0573	NEUTRAL	NA	175	Too-Many
TCGA.AA.A01Q.01A	1	226074448	226334264	17	-0.2478	NEUTRAL	NA	6	"ACBD3,H3F3A,LEFTY1,LEFTY2,PYCR2,SDE2"
TCGA.AH.6549.01A	1	226074448	244613192	1261	0.0983	NEUTRAL	NA	109	Too-Many
TCGA.AA.A00L.01A	1	226075047	227192567	96	-0.4495	NEUTRAL	NA	14	"ACBD3,ADCK3,C1orf95,CDC42BPA,H3F3A,ITPKB,LEFTY1,LEFTY2,LIN9,MIXL1,PARP1,PSEN2,PYCR2,SDE2"
TCGA.AG.A01L.01A	1	226128552	226182920	7	-0.4673	NEUTRAL	NA	2	"LEFTY2,SDE2"
TCGA.AG.A01L.01A	1	226186857	249210793	1351	-0.1076	NEUTRAL	NA	172	Too-Many
TCGA.AG.3909.01A	1	226334264	226822353	50	-0.0621	NEUTRAL	NA	6	"ACBD3,C1orf95,ITPKB,LIN9,MIXL1,PARP1"
TCGA.CK.5914.01A	1	226334264	227843406	129	-0.0064	NEUTRAL	NA	10	"ACBD3,ADCK3,C1orf95,CDC42BPA,ITPKB,LIN9,MIXL1,PARP1,PSEN2,ZNF678"
TCGA.AA.A01Q.01A	1	226340014	226485366	19	0.2886	NEUTRAL	NA	3	"ACBD3,LIN9,MIXL1"
TCGA.AA.3509.01A	1	226346855	226549618	23	0.0038	NEUTRAL	NA	4	"ACBD3,LIN9,MIXL1,PARP1"
TCGA.AA.A01Q.01A	1	226488804	226789637	29	-0.1473	NEUTRAL	NA	3	"C1orf95,LIN9,PARP1"
TCGA.AG.A00C.01A	1	226496783	234595976	551	-0.0294	NEUTRAL	NA	63	"ABCB10,ACTA1,ADCK3,AGT,ARF1,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,C1orf95,CAPN9,CCSAP,CDC42BPA,COA6,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GJC2,GNPAT,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,ITPKB,JMJD4,KCNK1,KIAA1804,LIN9,LOC149373,MAP10,MRPL55,NTPCR,NUP133,OBSCN,PARP1,PCNXL2,PGBD5,PRSS38,PSEN2,RAB4A,RHOU,RNF187,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,TAF5L,TARBP1,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A,ZNF678"
TCGA.A6.A56B	1	226541050	249198691	8422	-0.0048	NEUTRAL	NA	166	Too-Many
TCGA.AA.A00N.01A	1	226549101	227210906	68	0.2858	NEUTRAL	NA	6	"ADCK3,C1orf95,CDC42BPA,ITPKB,PARP1,PSEN2"
TCGA.AA.A010.01A	1	226576309	226589754	5	-0.3911	NEUTRAL	NA	1	PARP1
TCGA.AG.A01W.01A	1	226625302	229365293	187	0.327	NEUTRAL	NA	26	"ADCK3,ARF1,BTNL10,C1orf35,C1orf95,CDC42BPA,GJC2,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,ITPKB,JMJD4,MRPL55,OBSCN,PRSS38,PSEN2,RHOU,RNF187,SNAP47,TRIM11,TRIM17,WNT3A,WNT9A,ZNF678"
TCGA.AF.4110	1	226683250	226714203	13	-0.2374	NEUTRAL	NA	0	None
TCGA.DM.A1D9	1	226683250	249198691	8399	0.0132	NEUTRAL	NA	165	Too-Many
TCGA.AF.4110	1	226730435	249198691	8388	-0.2196	NEUTRAL	NA	165	Too-Many
TCGA.DM.A1HB	1	226737844	226748947	9	0.085	NEUTRAL	NA	1	C1orf95
TCGA.DM.A1HB	1	226771751	229335099	772	0.0447	NEUTRAL	NA	26	"ADCK3,ARF1,BTNL10,C1orf35,C1orf95,CDC42BPA,GJC2,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,ITPKB,JMJD4,MRPL55,OBSCN,PRSS38,PSEN2,RHOU,RNF187,SNAP47,TRIM11,TRIM17,WNT3A,WNT9A,ZNF678"
TCGA.AA.A010.01A	1	226895529	227079392	12	-0.3297	NEUTRAL	NA	2	"ITPKB,PSEN2"
TCGA.CM.5349	1	226921529	249198691	8296	-0.3243	NEUTRAL	NA	164	Too-Many
TCGA.AA.A01Q.01A	1	226923180	227079392	10	0.07	NEUTRAL	NA	2	"ITPKB,PSEN2"
TCGA.AG.3909.01A	1	227069548	227288652	46	0.1196	NEUTRAL	NA	3	"ADCK3,CDC42BPA,PSEN2"
TCGA.AA.A010.01A	1	227081656	227172922	13	0.3664	NEUTRAL	NA	2	"ADCK3,PSEN2"
TCGA.G4.6307	1	227121098	234453045	2906	-0.0119	NEUTRAL	NA	56	"ABCB10,ACTA1,ADCK3,AGT,ARF1,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,CAPN9,CCSAP,CDC42BPA,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GJC2,GNPAT,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,JMJD4,KCNK1,KIAA1804,LOC149373,MAP10,MRPL55,NTPCR,NUP133,OBSCN,PCNXL2,PGBD5,PRSS38,RAB4A,RHOU,RNF187,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,TAF5L,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A,ZNF678"
TCGA.A6.2671	1	227129719	227753270	215	-0.0214	NEUTRAL	NA	3	"ADCK3,CDC42BPA,ZNF678"
TCGA.AG.3906.01A	1	227171207	227954609	59	-0.218	NEUTRAL	NA	5	"ADCK3,CDC42BPA,JMJD4,SNAP47,ZNF678"
TCGA.AG.3891.01A	1	227174127	228336405	79	-0.258	NEUTRAL	NA	12	"ADCK3,ARF1,C1orf35,CDC42BPA,GUK1,JMJD4,MRPL55,PRSS38,SNAP47,WNT3A,WNT9A,ZNF678"
TCGA.AA.A01Q.01A	1	227204576	227288652	18	0.0844	NEUTRAL	NA	1	CDC42BPA
TCGA.AA.A010.01A	1	227261912	227968211	36	-0.1326	NEUTRAL	NA	4	"CDC42BPA,JMJD4,SNAP47,ZNF678"
TCGA.AZ.4684.01A	1	227268585	227838637	20	0.3519	NEUTRAL	NA	2	"CDC42BPA,ZNF678"
TCGA.AA.A00N.01A	1	227288652	227300342	3	0.2155	NEUTRAL	NA	1	CDC42BPA
TCGA.AG.3909.01A	1	227299966	228589715	130	-0.4067	NEUTRAL	NA	15	"ARF1,C1orf35,CDC42BPA,GJC2,GUK1,IBA57,JMJD4,MRPL55,OBSCN,PRSS38,SNAP47,TRIM11,WNT3A,WNT9A,ZNF678"
TCGA.AA.A00N.01A	1	227307468	229772436	248	-0.2699	NEUTRAL	NA	30	"ABCB10,ACTA1,ARF1,BTNL10,C1orf35,CCSAP,CDC42BPA,GJC2,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,JMJD4,MRPL55,NUP133,OBSCN,PRSS38,RAB4A,RHOU,RNF187,SNAP47,SPHAR,TAF5L,TRIM11,TRIM17,URB2,WNT3A,WNT9A,ZNF678"
TCGA.AA.A00A.01A	1	227330599	235338448	352	-0.3709	NEUTRAL	NA	61	"ABCB10,ACTA1,AGT,ARF1,ARID4B,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,CAPN9,CCSAP,CDC42BPA,COA6,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GJC2,GNPAT,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,IRF2BP2,JMJD4,KCNK1,KIAA1804,LOC149373,MAP10,MRPL55,NTPCR,NUP133,OBSCN,PCNXL2,PGBD5,PRSS38,RAB4A,RBM34,RHOU,RNF187,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,TAF5L,TARBP1,TOMM20,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A,ZNF678"
TCGA.AA.A00L.01A	1	227348204	231935834	285	-0.3885	NEUTRAL	NA	48	"ABCB10,ACTA1,AGT,ARF1,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,CAPN9,CCSAP,CDC42BPA,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GJC2,GNPAT,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,JMJD4,LOC149373,MRPL55,NUP133,OBSCN,PGBD5,PRSS38,RAB4A,RHOU,RNF187,SNAP47,SPHAR,SPRTN,TAF5L,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A,ZNF678"
TCGA.AA.A01Q.01A	1	227381466	232144522	316	0.0493	NEUTRAL	NA	48	"ABCB10,ACTA1,AGT,ARF1,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,CAPN9,CCSAP,CDC42BPA,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GJC2,GNPAT,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,JMJD4,LOC149373,MRPL55,NUP133,OBSCN,PGBD5,PRSS38,RAB4A,RHOU,RNF187,SNAP47,SPHAR,SPRTN,TAF5L,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A,ZNF678"
TCGA.CK.5914.01A	1	227920045	228676611	157	-0.4884	NEUTRAL	NA	18	"ARF1,C1orf35,GJC2,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,JMJD4,MRPL55,OBSCN,PRSS38,RNF187,SNAP47,TRIM11,TRIM17,WNT3A,WNT9A"
TCGA.AA.3509.01A	1	227920045	234744152	527	0.3728	NEUTRAL	NA	56	"ABCB10,ACTA1,AGT,ARF1,ARV1,BTNL10,C1orf131,C1orf198,C1orf35,CAPN9,CCSAP,COA6,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GJC2,GNPAT,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,IRF2BP2,JMJD4,KCNK1,KIAA1804,LOC149373,MAP10,MRPL55,NTPCR,NUP133,OBSCN,PCNXL2,PGBD5,PRSS38,RAB4A,RHOU,RNF187,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,TAF5L,TARBP1,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A"
TCGA.AZ.4684.01A	1	227920045	235872341	610	0.0627	NEUTRAL	NA	64	"ABCB10,ACTA1,AGT,ARF1,ARID4B,ARV1,B3GALNT2,BTNL10,C1orf131,C1orf198,C1orf35,CAPN9,CCSAP,COA6,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GGPS1,GJC2,GNG4,GNPAT,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,IRF2BP2,JMJD4,KCNK1,KIAA1804,LOC149373,LYST,MAP10,MRPL55,NTPCR,NUP133,OBSCN,PCNXL2,PGBD5,PRSS38,RAB4A,RBM34,RHOU,RNF187,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,TAF5L,TARBP1,TBCE,TOMM20,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A"
TCGA.A6.2671	1	228029954	228176816	35	-0.0113	NEUTRAL	NA	2	"PRSS38,WNT9A"
TCGA.AG.3906.01A	1	228111807	228528776	64	0.0209	NEUTRAL	NA	9	"ARF1,C1orf35,GJC2,GUK1,IBA57,MRPL55,OBSCN,WNT3A,WNT9A"
TCGA.D5.6533	1	228240519	228426980	36	-0.4666	NEUTRAL	NA	8	"ARF1,C1orf35,GJC2,GUK1,IBA57,MRPL55,OBSCN,WNT3A"
TCGA.AG.3891.01A	1	228345412	228412108	8	0.1742	NEUTRAL	NA	3	"GJC2,IBA57,OBSCN"
TCGA.AA.3967.01A	1	228399518	228565569	84	-0.3821	NEUTRAL	NA	1	OBSCN
TCGA.AA.A02K.01A	1	228401860	228412140	6	-0.0154	NEUTRAL	NA	1	OBSCN
TCGA.AG.4009.01A	1	228403297	228494575	33	-0.2778	NEUTRAL	NA	1	OBSCN
TCGA.AF.3914.01A	1	228404081	248756101	1224	0.171	NEUTRAL	NA	139	Too-Many
TCGA.D5.6533	1	228427192	230947139	992	0.2195	NEUTRAL	NA	22	"ABCB10,ACTA1,AGT,BTNL10,CAPN9,CCSAP,COG2,GALNT2,HIST3H2A,HIST3H2BB,HIST3H3,NUP133,OBSCN,PGBD5,RAB4A,RHOU,RNF187,SPHAR,TAF5L,TRIM11,TRIM17,URB2"
TCGA.AG.3891.01A	1	228430952	229749925	148	-0.1105	NEUTRAL	NA	16	"ABCB10,ACTA1,BTNL10,CCSAP,HIST3H2A,HIST3H2BB,HIST3H3,NUP133,OBSCN,RAB4A,RHOU,RNF187,SPHAR,TAF5L,TRIM11,TRIM17"
TCGA.AA.A02K.01A	1	228461110	241695682	868	0.1078	NEUTRAL	NA	70	"ABCB10,ACTA1,ACTN2,AGT,ARID4B,ARV1,B3GALNT2,BTNL10,C1orf131,C1orf198,CAPN9,CCSAP,CHRM3,COA6,COG2,DISC1,EDARADD,EGLN1,ERO1LB,EXOC8,FAM89A,FH,FMN2,GALNT2,GGPS1,GNG4,GNPAT,GPR137B,GREM2,HEATR1,HIST3H2A,HIST3H2BB,HIST3H3,IRF2BP2,KCNK1,KIAA1804,KMO,LGALS8,LOC149373,LYST,MAP10,MT1HL1,MTR,NID1,NTPCR,NUP133,OBSCN,PCNXL2,PGBD5,RAB4A,RBM34,RGS7,RHOU,RNF187,RYR2,SIPA1L2,SLC35F3,SPHAR,SPRTN,TAF5L,TARBP1,TBCE,TOMM20,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,ZP4"
TCGA.AA.3939.01A	1	228462291	228469587	10	-0.4847	NEUTRAL	NA	1	OBSCN
TCGA.AA.3939.01A	1	228470672	228645804	79	-0.0178	NEUTRAL	NA	5	"HIST3H2A,HIST3H3,OBSCN,TRIM11,TRIM17"
TCGA.AA.A010.01A	1	228494066	228646859	74	-0.1707	NEUTRAL	NA	6	"HIST3H2A,HIST3H2BB,HIST3H3,OBSCN,TRIM11,TRIM17"
TCGA.AG.4009.01A	1	228494948	228554483	25	0.1864	NEUTRAL	NA	1	OBSCN
TCGA.AA.3862.01A	1	228520514	234509196	384	0.366	NEUTRAL	NA	43	"ABCB10,ACTA1,AGT,ARV1,BTNL10,C1orf131,C1orf198,CAPN9,CCSAP,COA6,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GNPAT,HIST3H2A,HIST3H2BB,HIST3H3,KCNK1,KIAA1804,LOC149373,MAP10,NTPCR,NUP133,OBSCN,PCNXL2,PGBD5,RAB4A,RHOU,RNF187,SIPA1L2,SLC35F3,SPHAR,SPRTN,TAF5L,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2"
TCGA.AG.4009.01A	1	228556395	229577600	40	-0.4733	NEUTRAL	NA	14	"ACTA1,BTNL10,CCSAP,HIST3H2A,HIST3H2BB,HIST3H3,NUP133,OBSCN,RAB4A,RHOU,RNF187,SPHAR,TRIM11,TRIM17"
TCGA.AA.3967.01A	1	228566282	231051892	163	0.1766	NEUTRAL	NA	24	"ABCB10,ACTA1,AGT,BTNL10,C1orf198,CAPN9,CCSAP,COG2,GALNT2,HIST3H2A,HIST3H2BB,HIST3H3,NUP133,OBSCN,PGBD5,RAB4A,RHOU,RNF187,SPHAR,TAF5L,TRIM11,TRIM17,TTC13,URB2"
TCGA.AG.3906.01A	1	228582395	229386830	18	-0.2294	NEUTRAL	NA	8	"BTNL10,HIST3H2A,HIST3H2BB,HIST3H3,RHOU,RNF187,TRIM11,TRIM17"
TCGA.AA.3939.01A	1	228646019	249213943	1228	0.3058	NEUTRAL	NA	144	Too-Many
TCGA.AG.3909.01A	1	228646859	229684954	57	-0.3304	NEUTRAL	NA	9	"ABCB10,ACTA1,BTNL10,CCSAP,NUP133,RAB4A,RHOU,RNF187,SPHAR"
TCGA.A6.3808.01A	1	228680717	229643768	52	-0.2569	NEUTRAL	NA	8	"ACTA1,BTNL10,CCSAP,NUP133,RAB4A,RHOU,RNF187,SPHAR"
TCGA.F5.6810	1	228740120	249198691	7803	-0.0626	NEUTRAL	NA	140	Too-Many
TCGA.CK.4947	1	228791783	249198691	7798	-0.001	NEUTRAL	NA	140	Too-Many
TCGA.CK.5914.01A	1	228873348	229584815	22	-0.3431	NEUTRAL	NA	6	"ACTA1,CCSAP,NUP133,RAB4A,RHOU,SPHAR"
TCGA.CM.6163	1	228972949	231911975	1153	0.3369	NEUTRAL	NA	26	"ABCB10,ACTA1,AGT,ARV1,C1orf131,C1orf198,CAPN9,CCSAP,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GNPAT,LOC149373,NUP133,PGBD5,RAB4A,SPHAR,SPRTN,TAF5L,TRIM67,TSNAX,TTC13,URB2"
TCGA.DM.A28H	1	229290229	249198691	7585	0.0059	NEUTRAL	NA	139	Too-Many
TCGA.DM.A1HB	1	229335419	229368471	29	-0.5069	NEUTRAL	NA	0	None
TCGA.DM.A1HB	1	229369484	244372985	5989	0.0116	NEUTRAL	NA	72	"ABCB10,ACTA1,ACTN2,AGT,AKT3,ARID4B,ARV1,B3GALNT2,BECN2,C1orf131,C1orf198,CAPN9,CCSAP,CEP170,CHML,CHRM3,COA6,COG2,DISC1,EDARADD,EGLN1,ERO1LB,EXO1,EXOC8,FAM89A,FH,FMN2,GALNT2,GGPS1,GNG4,GNPAT,GPR137B,GREM2,HEATR1,IRF2BP2,KCNK1,KIAA1804,KMO,LGALS8,LOC149373,LYST,MAP10,MAP1LC3C,MT1HL1,MTR,NID1,NTPCR,NUP133,OPN3,PCNXL2,PGBD5,PLD5,RAB4A,RBM34,RGS7,RYR2,SDCCAG8,SIPA1L2,SLC35F3,SPHAR,SPRTN,TAF5L,TARBP1,TBCE,TOMM20,TRIM67,TSNAX,TTC13,URB2,WDR64,ZBTB18,ZP4"
TCGA.AG.A01W.01A	1	229399691	229479794	29	-0.0701	NEUTRAL	NA	3	"CCSAP,RAB4A,SPHAR"
TCGA.AG.3906.01A	1	229433202	229675166	44	-0.0609	NEUTRAL	NA	6	"ABCB10,ACTA1,CCSAP,NUP133,RAB4A,SPHAR"
TCGA.AA.A010.01A	1	229434675	229667339	44	0.1045	NEUTRAL	NA	6	"ABCB10,ACTA1,CCSAP,NUP133,RAB4A,SPHAR"
TCGA.AG.A011.01A	1	229477828	230778317	82	0.3733	NEUTRAL	NA	9	"ABCB10,ACTA1,CCSAP,COG2,GALNT2,NUP133,PGBD5,TAF5L,URB2"
TCGA.AG.A01W.01A	1	229542100	230630734	37	0.2272	NEUTRAL	NA	7	"ABCB10,ACTA1,GALNT2,NUP133,PGBD5,TAF5L,URB2"
TCGA.AG.4009.01A	1	229580607	229667339	32	-0.1112	NEUTRAL	NA	2	"ABCB10,NUP133"
TCGA.CK.5914.01A	1	229586212	229622081	13	0.3015	NEUTRAL	NA	1	NUP133
TCGA.D5.5538	1	229594309	249198691	7475	0.007	NEUTRAL	NA	135	Too-Many
TCGA.CK.5914.01A	1	229623165	229781554	34	-0.4198	NEUTRAL	NA	4	"ABCB10,NUP133,TAF5L,URB2"
TCGA.AG.3909.01A	1	229729992	230513194	39	0.2847	NEUTRAL	NA	4	"GALNT2,PGBD5,TAF5L,URB2"
TCGA.AG.3891.01A	1	229770642	235505288	325	-0.0347	NEUTRAL	NA	33	"AGT,ARID4B,ARV1,C1orf131,C1orf198,CAPN9,COA6,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GGPS1,GNPAT,IRF2BP2,KCNK1,KIAA1804,LOC149373,MAP10,NTPCR,PCNXL2,PGBD5,RBM34,SIPA1L2,SLC35F3,SPRTN,TARBP1,TOMM20,TRIM67,TSNAX,TTC13,URB2"
TCGA.AG.3906.01A	1	229773257	231413170	134	0.0296	NEUTRAL	NA	14	"AGT,ARV1,C1orf131,C1orf198,CAPN9,COG2,FAM89A,GALNT2,GNPAT,LOC149373,PGBD5,TRIM67,TTC13,URB2"
TCGA.A6.3808.01A	1	229781554	234509196	262	0.2446	NEUTRAL	NA	27	"AGT,ARV1,C1orf131,C1orf198,CAPN9,COA6,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GNPAT,KCNK1,KIAA1804,LOC149373,MAP10,NTPCR,PCNXL2,PGBD5,SIPA1L2,SLC35F3,SPRTN,TRIM67,TSNAX,TTC13,URB2"
TCGA.CK.5914.01A	1	229783220	230979052	72	0.2813	NEUTRAL	NA	7	"AGT,C1orf198,CAPN9,COG2,GALNT2,PGBD5,URB2"
TCGA.AG.3898	1	230015784	230912479	439	0.2801	NEUTRAL	NA	5	"AGT,CAPN9,COG2,GALNT2,PGBD5"
TCGA.AG.4009.01A	1	230338841	231096905	90	0.0816	NEUTRAL	NA	7	"AGT,C1orf198,CAPN9,COG2,GALNT2,PGBD5,TTC13"
TCGA.AA.3971	1	230654588	236802015	2532	0.0111	NEUTRAL	NA	40	"AGT,ARID4B,ARV1,B3GALNT2,C1orf131,C1orf198,CAPN9,COA6,COG2,DISC1,EDARADD,EGLN1,ERO1LB,EXOC8,FAM89A,GGPS1,GNG4,GNPAT,GPR137B,HEATR1,IRF2BP2,KCNK1,KIAA1804,LGALS8,LOC149373,LYST,MAP10,NID1,NTPCR,PCNXL2,RBM34,SIPA1L2,SLC35F3,SPRTN,TARBP1,TBCE,TOMM20,TRIM67,TSNAX,TTC13"
TCGA.AA.A00N.01A	1	230778317	230814647	10	-0.3138	NEUTRAL	NA	1	COG2
TCGA.AG.3909.01A	1	230778317	230898352	26	-0.0991	NEUTRAL	NA	3	"AGT,CAPN9,COG2"
TCGA.AG.A011.01A	1	230795173	230825718	15	-0.2378	NEUTRAL	NA	1	COG2
TCGA.AG.A011.01A	1	230883202	231700264	100	-0.3051	NEUTRAL	NA	13	"ARV1,C1orf131,C1orf198,CAPN9,EGLN1,EXOC8,FAM89A,GNPAT,LOC149373,SPRTN,TRIM67,TSNAX,TTC13"
TCGA.AG.3909.01A	1	230903248	230979052	18	0.3167	NEUTRAL	NA	2	"C1orf198,CAPN9"
TCGA.AG.3898	1	230912617	230926056	9	-0.2273	NEUTRAL	NA	1	CAPN9
TCGA.AG.3898	1	230928350	249198691	6861	0.2187	NEUTRAL	NA	127	Too-Many
TCGA.AG.3909.01A	1	230991341	231067435	15	-0.2212	NEUTRAL	NA	2	"C1orf198,TTC13"
TCGA.AA.A00N.01A	1	230991341	231090028	21	0.0889	NEUTRAL	NA	2	"C1orf198,TTC13"
TCGA.CK.5914.01A	1	230991341	231132820	28	-0.4576	NEUTRAL	NA	3	"ARV1,C1orf198,TTC13"
TCGA.AA.3967.01A	1	231056198	231351056	32	-0.2387	NEUTRAL	NA	5	"ARV1,FAM89A,LOC149373,TRIM67,TTC13"
TCGA.AG.A01W.01A	1	231152999	231453069	31	0.0396	NEUTRAL	NA	5	"C1orf131,FAM89A,GNPAT,LOC149373,TRIM67"
TCGA.AA.A00N.01A	1	231155546	231334746	4	0.0637	NEUTRAL	NA	3	"FAM89A,LOC149373,TRIM67"
TCGA.AG.3909.01A	1	231155546	231351056	11	0.2702	NEUTRAL	NA	3	"FAM89A,LOC149373,TRIM67"
TCGA.CK.5914.01A	1	231155546	234584174	180	0.161	NEUTRAL	NA	19	"C1orf131,COA6,DISC1,EGLN1,EXOC8,FAM89A,GNPAT,KCNK1,KIAA1804,LOC149373,MAP10,NTPCR,PCNXL2,SIPA1L2,SLC35F3,SPRTN,TARBP1,TRIM67,TSNAX"
TCGA.A6.5656	1	231186639	235827442	1907	-0.0224	NEUTRAL	NA	27	"ARID4B,B3GALNT2,C1orf131,COA6,DISC1,EGLN1,EXOC8,GGPS1,GNG4,GNPAT,IRF2BP2,KCNK1,KIAA1804,LOC149373,LYST,MAP10,NTPCR,PCNXL2,RBM34,SIPA1L2,SLC35F3,SPRTN,TARBP1,TBCE,TOMM20,TRIM67,TSNAX"
TCGA.AG.4009.01A	1	231298669	234613889	176	-0.0299	NEUTRAL	NA	18	"C1orf131,COA6,DISC1,EGLN1,EXOC8,GNPAT,KCNK1,KIAA1804,LOC149373,MAP10,NTPCR,PCNXL2,SIPA1L2,SLC35F3,SPRTN,TARBP1,TRIM67,TSNAX"
TCGA.D5.6922	1	231359418	240055113	3665	-0.4319	NEUTRAL	NA	37	"ACTN2,ARID4B,B3GALNT2,C1orf131,CHRM3,COA6,DISC1,EDARADD,EGLN1,ERO1LB,EXOC8,GGPS1,GNG4,GNPAT,GPR137B,HEATR1,IRF2BP2,KCNK1,KIAA1804,LGALS8,LYST,MAP10,MT1HL1,MTR,NID1,NTPCR,PCNXL2,RBM34,RYR2,SIPA1L2,SLC35F3,SPRTN,TARBP1,TBCE,TOMM20,TSNAX,ZP4"
TCGA.AA.3967.01A	1	231359973	232094505	49	0.2864	NEUTRAL	NA	7	"C1orf131,DISC1,EGLN1,EXOC8,GNPAT,SPRTN,TSNAX"
TCGA.AG.3906.01A	1	231483492	232564110	34	-0.0835	NEUTRAL	NA	5	"DISC1,EGLN1,SIPA1L2,SPRTN,TSNAX"
TCGA.AG.3909.01A	1	231502093	231509684	4	0.1125	NEUTRAL	NA	1	EGLN1
TCGA.AG.3909.01A	1	231696827	232561285	22	0.3483	NEUTRAL	NA	3	"DISC1,SIPA1L2,TSNAX"
TCGA.F4.6808	1	231747988	249198691	6627	-0.1425	NEUTRAL	NA	114	Too-Many
TCGA.AG.A011.01A	1	231829540	232002199	9	0.3093	NEUTRAL	NA	1	DISC1
TCGA.AA.A00Q.01A	1	231885635	233514675	32	0.0838	NEUTRAL	NA	6	"DISC1,KIAA1804,MAP10,NTPCR,PCNXL2,SIPA1L2"
TCGA.CM.6163	1	231912591	231956367	19	-0.4683	NEUTRAL	NA	1	DISC1
TCGA.AA.A00L.01A	1	231954033	233482151	27	-0.0162	NEUTRAL	NA	6	"DISC1,KIAA1804,MAP10,NTPCR,PCNXL2,SIPA1L2"
TCGA.CM.6165.01A	1	231954033	249213943	994	0.0298	NEUTRAL	NA	115	Too-Many
TCGA.A6.2671	1	231956367	233010612	553	-0.0226	NEUTRAL	NA	3	"DISC1,MAP10,SIPA1L2"
TCGA.CM.6163	1	231957058	249198691	6559	0.3609	NEUTRAL	NA	114	Too-Many
TCGA.AG.A011.01A	1	232094505	237711684	415	-0.3621	NEUTRAL	NA	29	"ACTN2,ARID4B,B3GALNT2,COA6,DISC1,EDARADD,ERO1LB,GGPS1,GNG4,GPR137B,HEATR1,IRF2BP2,KCNK1,KIAA1804,LGALS8,LYST,MAP10,MT1HL1,MTR,NID1,NTPCR,PCNXL2,RBM34,RYR2,SIPA1L2,SLC35F3,TARBP1,TBCE,TOMM20"
TCGA.AA.A00D.01A	1	232098480	232619486	8	0.3144	NEUTRAL	NA	2	"DISC1,SIPA1L2"
TCGA.AA.3967.01A	1	232098480	233372544	59	-0.2168	NEUTRAL	NA	5	"DISC1,MAP10,NTPCR,PCNXL2,SIPA1L2"
TCGA.CA.6715	1	232307230	233999206	839	0.0202	NEUTRAL	NA	6	"KCNK1,KIAA1804,MAP10,NTPCR,PCNXL2,SIPA1L2"
TCGA.AA.3488	1	232381333	246152738	5603	0.2986	NEUTRAL	NA	55	"ACTN2,ADSS,AKT3,ARID4B,B3GALNT2,BECN2,C1orf100,C1orf101,CEP170,CHML,CHRM3,COA6,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GGPS1,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,IRF2BP2,KCNK1,KIAA1804,KIF26B,KMO,LGALS8,LYST,MAP10,MAP1LC3C,MT1HL1,MTR,NID1,NTPCR,OPN3,PCNXL2,PLD5,RBM34,RGS7,RYR2,SDCCAG8,SIPA1L2,SLC35F3,SMYD3,TARBP1,TBCE,TOMM20,WDR64,ZBTB18,ZP4"
TCGA.AG.3906.01A	1	232568005	233086375	19	-0.4021	NEUTRAL	NA	3	"MAP10,NTPCR,SIPA1L2"
TCGA.AG.3909.01A	1	232581263	232650164	10	0.1154	NEUTRAL	NA	1	SIPA1L2
TCGA.AA.A01Q.01A	1	232615326	248813185	715	0.1329	NEUTRAL	NA	107	Too-Many
TCGA.AA.A00D.01A	1	232649623	233514675	19	-0.1954	NEUTRAL	NA	5	"KIAA1804,MAP10,NTPCR,PCNXL2,SIPA1L2"
TCGA.A6.6653	1	232824324	232884234	22	-0.4966	NEUTRAL	NA	0	None
TCGA.A6.6653	1	232887700	246837601	5542	-0.0147	NEUTRAL	NA	56	"ACTN2,ADSS,AKT3,ARID4B,B3GALNT2,BECN2,C1orf100,C1orf101,CEP170,CHML,CHRM3,CNST,COA6,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GGPS1,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,IRF2BP2,KCNK1,KIAA1804,KIF26B,KMO,LGALS8,LYST,MAP10,MAP1LC3C,MT1HL1,MTR,NID1,NTPCR,OPN3,PCNXL2,PLD5,RBM34,RGS7,RYR2,SDCCAG8,SLC35F3,SMYD3,TARBP1,TBCE,TFB2M,TOMM20,WDR64,ZBTB18,ZP4"
TCGA.AG.3725	1	233071632	234481677	671	-0.3789	NEUTRAL	NA	5	"KCNK1,KIAA1804,NTPCR,PCNXL2,SLC35F3"
TCGA.A6.2671	1	233080790	233887988	371	-0.0139	NEUTRAL	NA	4	"KCNK1,KIAA1804,NTPCR,PCNXL2"
TCGA.AG.3906.01A	1	233091296	234595976	81	0.027	NEUTRAL	NA	7	"COA6,KCNK1,KIAA1804,NTPCR,PCNXL2,SLC35F3,TARBP1"
TCGA.AG.3909.01A	1	233120023	234594925	78	0.0794	NEUTRAL	NA	6	"COA6,KCNK1,KIAA1804,PCNXL2,SLC35F3,TARBP1"
TCGA.AD.6901	1	233316168	249198691	5889	-0.2732	NEUTRAL	NA	110	Too-Many
TCGA.AA.A010.01A	1	233353560	234041238	28	-0.423	NEUTRAL	NA	4	"KCNK1,KIAA1804,PCNXL2,SLC35F3"
TCGA.AA.3967.01A	1	233386434	237060805	332	0.1458	NEUTRAL	NA	23	"ACTN2,ARID4B,B3GALNT2,COA6,EDARADD,ERO1LB,GGPS1,GNG4,GPR137B,HEATR1,IRF2BP2,KCNK1,KIAA1804,LGALS8,LYST,MTR,NID1,PCNXL2,RBM34,SLC35F3,TARBP1,TBCE,TOMM20"
TCGA.F5.6863	1	233427619	233621703	98	1.00E-04	NEUTRAL	NA	2	"KIAA1804,PCNXL2"
TCGA.AZ.6607	1	233775478	249198691	5648	0.0789	NEUTRAL	NA	108	Too-Many
TCGA.AA.3952	1	234405403	235251383	369	0.0488	NEUTRAL	NA	4	"COA6,IRF2BP2,SLC35F3,TARBP1"
TCGA.G4.6307	1	234455147	235701313	404	-0.4582	NEUTRAL	NA	10	"ARID4B,B3GALNT2,COA6,GGPS1,IRF2BP2,RBM34,SLC35F3,TARBP1,TBCE,TOMM20"
TCGA.DM.A0XD	1	234481677	249198691	5304	0.3479	NEUTRAL	NA	106	Too-Many
TCGA.AG.3725	1	234492058	249198691	5311	0.054	NEUTRAL	NA	106	Too-Many
TCGA.AA.A00Q.01A	1	234509196	235324168	40	-0.1935	NEUTRAL	NA	5	"COA6,IRF2BP2,RBM34,TARBP1,TOMM20"
TCGA.AA.A00D.01A	1	234509196	235338448	41	-0.267	NEUTRAL	NA	6	"ARID4B,COA6,IRF2BP2,RBM34,TARBP1,TOMM20"
TCGA.AA.A00L.01A	1	234509924	235338448	42	-0.3389	NEUTRAL	NA	6	"ARID4B,COA6,IRF2BP2,RBM34,TARBP1,TOMM20"
TCGA.AA.A010.01A	1	234569134	234586126	5	-0.4316	NEUTRAL	NA	1	TARBP1
TCGA.AG.A01W.01A	1	234624318	234772597	12	-0.0485	NEUTRAL	NA	1	IRF2BP2
TCGA.CM.6167	1	234726355	235374045	218	0.0137	NEUTRAL	NA	4	"ARID4B,IRF2BP2,RBM34,TOMM20"
TCGA.AG.4009.01A	1	234744152	244868827	574	-0.116	NEUTRAL	NA	41	"ACTN2,ADSS,AKT3,ARID4B,B3GALNT2,BECN2,C1orf100,C1orf101,CEP170,CHML,CHRM3,DESI2,EDARADD,ERO1LB,EXO1,FH,FMN2,GGPS1,GNG4,GPR137B,GREM2,HEATR1,IRF2BP2,KMO,LGALS8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,OPN3,PLD5,RBM34,RGS7,RYR2,SDCCAG8,TBCE,TOMM20,WDR64,ZBTB18,ZP4"
TCGA.AA.3509.01A	1	234745021	235397670	33	-0.0142	NEUTRAL	NA	4	"ARID4B,IRF2BP2,RBM34,TOMM20"
TCGA.AG.A01W.01A	1	234791071	234801246	6	0.0889	NEUTRAL	NA	0	None
TCGA.AA.3979	1	234801408	243384164	3490	-0.0161	NEUTRAL	NA	33	"ACTN2,ARID4B,B3GALNT2,BECN2,CEP170,CHML,CHRM3,EDARADD,ERO1LB,EXO1,FH,FMN2,GGPS1,GNG4,GPR137B,GREM2,HEATR1,KMO,LGALS8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,OPN3,PLD5,RBM34,RGS7,RYR2,TBCE,TOMM20,WDR64,ZP4"
TCGA.AG.3612	1	235009035	249198691	5034	0.0133	NEUTRAL	NA	103	Too-Many
TCGA.AA.A010.01A	1	235275353	235543328	45	0.1993	NEUTRAL	NA	5	"ARID4B,GGPS1,RBM34,TBCE,TOMM20"
TCGA.AG.3906.01A	1	235275353	249210793	802	-0.0044	NEUTRAL	NA	104	Too-Many
TCGA.AA.A00N.01A	1	235324168	235341098	6	-0.397	NEUTRAL	NA	2	"ARID4B,RBM34"
TCGA.AG.3909.01A	1	235324168	235423907	23	-0.0945	NEUTRAL	NA	2	"ARID4B,RBM34"
TCGA.AG.A00C.01A	1	235324168	235423907	23	-0.0066	NEUTRAL	NA	2	"ARID4B,RBM34"
TCGA.CK.5914.01A	1	235324168	235423907	24	-0.1404	NEUTRAL	NA	2	"ARID4B,RBM34"
TCGA.CM.6167	1	235375818	249198691	4983	0.3518	NEUTRAL	NA	101	Too-Many
TCGA.AA.A00L.01A	1	235384843	243456346	381	-0.459	NEUTRAL	NA	32	"ACTN2,ARID4B,B3GALNT2,BECN2,CEP170,CHML,CHRM3,EDARADD,ERO1LB,EXO1,FH,FMN2,GGPS1,GNG4,GPR137B,GREM2,HEATR1,KMO,LGALS8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,OPN3,PLD5,RGS7,RYR2,SDCCAG8,TBCE,WDR64,ZP4"
TCGA.AA.A00D.01A	1	235384843	247081504	540	-0.4773	NEUTRAL	NA	47	"ACTN2,ADSS,AHCTF1,AKT3,ARID4B,B3GALNT2,BECN2,C1orf100,C1orf101,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GGPS1,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,OPN3,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SMYD3,TBCE,TFB2M,WDR64,ZBTB18,ZP4"
TCGA.AA.3509.01A	1	235418949	235872341	47	0.0584	NEUTRAL	NA	6	"ARID4B,B3GALNT2,GGPS1,GNG4,LYST,TBCE"
TCGA.AA.A00A.01A	1	235420411	247081504	523	-0.4395	NEUTRAL	NA	47	"ACTN2,ADSS,AHCTF1,AKT3,ARID4B,B3GALNT2,BECN2,C1orf100,C1orf101,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GGPS1,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,OPN3,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SMYD3,TBCE,TFB2M,WDR64,ZBTB18,ZP4"
TCGA.AA.A00Q.01A	1	235490135	235577731	8	0.0876	NEUTRAL	NA	3	"ARID4B,GGPS1,TBCE"
TCGA.AA.3518	1	235499262	249198691	4943	0.0019	NEUTRAL	NA	100	"ACTN2,ADSS,AHCTF1,AKT3,B3GALNT2,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GGPS1,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TBCE,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AG.3909.01A	1	235506859	235993488	78	0.0468	NEUTRAL	NA	5	"B3GALNT2,GGPS1,GNG4,LYST,TBCE"
TCGA.AG.A00C.01A	1	235543328	236416697	117	-0.0144	NEUTRAL	NA	7	"B3GALNT2,ERO1LB,GNG4,GPR137B,LYST,NID1,TBCE"
TCGA.AA.A00N.01A	1	235564770	235840752	32	0.0947	NEUTRAL	NA	4	"B3GALNT2,GNG4,LYST,TBCE"
TCGA.CK.5914.01A	1	235577731	235611944	13	-0.2498	NEUTRAL	NA	2	"B3GALNT2,TBCE"
TCGA.AA.A00Q.01A	1	235582766	237060805	226	-0.3988	NEUTRAL	NA	12	"ACTN2,B3GALNT2,EDARADD,ERO1LB,GNG4,GPR137B,HEATR1,LGALS8,LYST,MTR,NID1,TBCE"
TCGA.A6.3808.01A	1	235611944	242030124	436	0.2807	NEUTRAL	NA	25	"ACTN2,B3GALNT2,CHML,CHRM3,EDARADD,ERO1LB,EXO1,FH,FMN2,GNG4,GPR137B,GREM2,HEATR1,KMO,LGALS8,LYST,MT1HL1,MTR,NID1,OPN3,RGS7,RYR2,TBCE,WDR64,ZP4"
TCGA.CK.5914.01A	1	235613484	236416697	103	0.2998	NEUTRAL	NA	6	"B3GALNT2,ERO1LB,GNG4,GPR137B,LYST,NID1"
TCGA.AA.A010.01A	1	235616334	235747011	12	-0.144	NEUTRAL	NA	2	"B3GALNT2,GNG4"
TCGA.AG.3891.01A	1	235628892	249210793	744	-0.1114	NEUTRAL	NA	99	"ACTN2,ADSS,AHCTF1,AKT3,B3GALNT2,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.A6.2671	1	235652048	249198691	4940	0.0776	NEUTRAL	NA	98	"ACTN2,ADSS,AHCTF1,AKT3,B3GALNT2,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.G4.6307	1	235705621	236107013	114	-0.3754	NEUTRAL	NA	2	"GNG4,LYST"
TCGA.AA.3848	1	235705621	236786472	387	0.1481	NEUTRAL	NA	8	"EDARADD,ERO1LB,GNG4,GPR137B,HEATR1,LGALS8,LYST,NID1"
TCGA.AG.3728	1	235705621	249198691	4935	0.0176	NEUTRAL	NA	97	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.3693	1	235708537	249198691	4932	0.0287	NEUTRAL	NA	97	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.3952	1	235838758	249198691	4880	0.0237	NEUTRAL	NA	96	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.A010.01A	1	235850201	235907232	17	0.2745	NEUTRAL	NA	1	LYST
TCGA.AA.A010.01A	1	235909619	236142248	30	-0.1334	NEUTRAL	NA	2	"LYST,NID1"
TCGA.AZ.4684.01A	1	235944143	236734604	90	0.0988	NEUTRAL	NA	7	"EDARADD,ERO1LB,GPR137B,HEATR1,LGALS8,LYST,NID1"
TCGA.AA.A00N.01A	1	236016232	236156913	9	-0.4207	NEUTRAL	NA	2	"LYST,NID1"
TCGA.G4.6307	1	236107085	249198691	4815	0.0003	NEUTRAL	NA	95	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AG.3909.01A	1	236141119	236148640	6	-0.4309	NEUTRAL	NA	1	NID1
TCGA.AG.3909.01A	1	236154136	236416697	34	0.1803	NEUTRAL	NA	3	"ERO1LB,GPR137B,NID1"
TCGA.AA.A010.01A	1	236201396	236416697	25	-0.2298	NEUTRAL	NA	3	"ERO1LB,GPR137B,NID1"
TCGA.DY.A1DG	1	236205120	249198691	4778	0.0007	NEUTRAL	NA	95	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.A00N.01A	1	236433145	236706035	15	-0.443	NEUTRAL	NA	3	"EDARADD,ERO1LB,LGALS8"
TCGA.CK.5914.01A	1	236433145	236715272	19	-0.4778	NEUTRAL	NA	4	"EDARADD,ERO1LB,HEATR1,LGALS8"
TCGA.AA.3509.01A	1	236572494	236734604	31	0.0085	NEUTRAL	NA	3	"EDARADD,HEATR1,LGALS8"
TCGA.AG.3909.01A	1	236631452	236958924	72	0.0948	NEUTRAL	NA	5	"ACTN2,EDARADD,HEATR1,LGALS8,MTR"
TCGA.AG.A00C.01A	1	236631452	237814660	154	-0.1778	NEUTRAL	NA	7	"ACTN2,EDARADD,HEATR1,LGALS8,MT1HL1,MTR,RYR2"
TCGA.AA.A00F.01A	1	236631452	241964384	205	-0.0781	NEUTRAL	NA	17	"ACTN2,CHML,CHRM3,EDARADD,FH,FMN2,GREM2,HEATR1,KMO,LGALS8,MT1HL1,MTR,OPN3,RGS7,RYR2,WDR64,ZP4"
TCGA.CK.5914.01A	1	236716841	237777310	129	0.2	NEUTRAL	NA	5	"ACTN2,HEATR1,MT1HL1,MTR,RYR2"
TCGA.AA.3977	1	236736996	249198691	4556	0.0386	NEUTRAL	NA	90	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,MT1HL1,MTR,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.3870	1	236737932	245449934	3458	0.3638	NEUTRAL	NA	31	"ACTN2,ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,CHML,CHRM3,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GREM2,HEATR1,HNRNPU,KIF26B,KMO,MAP1LC3C,MT1HL1,MTR,OPN3,PLD5,RGS7,RYR2,SDCCAG8,WDR64,ZBTB18,ZP4"
TCGA.AA.A010.01A	1	236744505	236883351	21	0.0431	NEUTRAL	NA	2	"ACTN2,HEATR1"
TCGA.AA.3864	1	236746274	249198691	4552	0.0326	NEUTRAL	NA	90	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,MT1HL1,MTR,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.3872	1	236746274	249198691	4562	0.2	NEUTRAL	NA	90	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,MT1HL1,MTR,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AZ.4684.01A	1	236754110	237875015	134	0.2428	NEUTRAL	NA	5	"ACTN2,HEATR1,MT1HL1,MTR,RYR2"
TCGA.AA.3848	1	236792481	249198691	4541	0.0197	NEUTRAL	NA	89	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,MT1HL1,MTR,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.3971	1	236802092	237022233	106	-0.434	NEUTRAL	NA	2	"ACTN2,MTR"
TCGA.AA.A00N.01A	1	236910940	236987372	18	-0.0394	NEUTRAL	NA	2	"ACTN2,MTR"
TCGA.AA.3862.01A	1	236958924	242287743	268	0.0471	NEUTRAL	NA	17	"BECN2,CHML,CHRM3,EXO1,FH,FMN2,GREM2,KMO,MAP1LC3C,MT1HL1,MTR,OPN3,PLD5,RGS7,RYR2,WDR64,ZP4"
TCGA.AG.3909.01A	1	236966691	237060805	32	-0.3256	NEUTRAL	NA	1	MTR
TCGA.AA.A010.01A	1	236971942	241751994	209	0.109	NEUTRAL	NA	10	"CHRM3,FH,FMN2,GREM2,KMO,MT1HL1,MTR,RGS7,RYR2,ZP4"
TCGA.AA.3971	1	237027611	249198691	4425	-0.0287	NEUTRAL	NA	88	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,MT1HL1,MTR,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.3967.01A	1	237205765	237994739	103	-0.3864	NEUTRAL	NA	1	RYR2
TCGA.AA.3811	1	237282750	239009486	834	-0.209	NEUTRAL	NA	2	"RYR2,ZP4"
TCGA.AA.3941	1	237374048	238305507	437	0.0153	NEUTRAL	NA	2	"RYR2,ZP4"
TCGA.AA.3850	1	237396787	240056780	1154	-0.21965	NEUTRAL	NA	3	"CHRM3,RYR2,ZP4"
TCGA.AG.3909.01A	1	237433746	237794700	41	0.1675	NEUTRAL	NA	1	RYR2
TCGA.AA.3930.01A	1	237693672	240519066	112	-0.1405	NEUTRAL	NA	4	"CHRM3,FMN2,RYR2,ZP4"
TCGA.AG.A011.01A	1	237732395	237872727	40	-0.3689	NEUTRAL	NA	1	RYR2
TCGA.CK.5914.01A	1	237780549	237814660	14	-0.1201	NEUTRAL	NA	1	RYR2
TCGA.AA.A00N.01A	1	237796831	237814660	9	0.3614	NEUTRAL	NA	1	RYR2
TCGA.AG.3909.01A	1	237796831	237814660	9	-0.1988	NEUTRAL	NA	1	RYR2
TCGA.AG.A00C.01A	1	237817526	237862208	12	0.3	NEUTRAL	NA	1	RYR2
TCGA.AG.3909.01A	1	237843714	237995803	44	0.0709	NEUTRAL	NA	1	RYR2
TCGA.CK.5914.01A	1	237850679	237905586	18	-0.1998	NEUTRAL	NA	1	RYR2
TCGA.AG.A00C.01A	1	237863487	237994739	40	-0.2899	NEUTRAL	NA	1	RYR2
TCGA.AZ.4684.01A	1	237905586	249213943	500	0.1838	NEUTRAL	NA	87	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AG.A011.01A	1	237919561	240637341	57	-0.3271	NEUTRAL	NA	4	"CHRM3,FMN2,RYR2,ZP4"
TCGA.AA.A00Q.01A	1	237951271	241261913	51	-0.3427	NEUTRAL	NA	6	"CHRM3,FMN2,GREM2,RGS7,RYR2,ZP4"
TCGA.CK.5914.01A	1	237957115	241680445	73	-0.2332	NEUTRAL	NA	7	"CHRM3,FH,FMN2,GREM2,RGS7,RYR2,ZP4"
TCGA.AG.A00C.01A	1	237995803	240351444	19	0.0305	NEUTRAL	NA	4	"CHRM3,FMN2,RYR2,ZP4"
TCGA.AA.3967.01A	1	237995803	244006352	168	-0.0301	NEUTRAL	NA	18	"AKT3,BECN2,CEP170,CHML,CHRM3,EXO1,FH,FMN2,GREM2,KMO,MAP1LC3C,OPN3,PLD5,RGS7,RYR2,SDCCAG8,WDR64,ZP4"
TCGA.A6.5656	1	238000866	242090413	1824	0.0445	NEUTRAL	NA	11	"CHML,CHRM3,EXO1,FH,FMN2,GREM2,KMO,OPN3,RGS7,WDR64,ZP4"
TCGA.AG.A02X.01A	1	238045695	241518941	47	-0.0061	NEUTRAL	NA	5	"CHRM3,FMN2,GREM2,RGS7,ZP4"
TCGA.AG.3909.01A	1	238053139	241667290	46	-0.334	NEUTRAL	NA	6	"CHRM3,FH,FMN2,GREM2,RGS7,ZP4"
TCGA.AA.3982	1	238367607	238669968	139	-0.1285	NEUTRAL	NA	0	None
TCGA.AA.3941	1	238367607	244134387	2222	0.0604	NEUTRAL	NA	16	"AKT3,BECN2,CEP170,CHML,CHRM3,EXO1,FH,FMN2,GREM2,KMO,MAP1LC3C,OPN3,PLD5,RGS7,SDCCAG8,WDR64"
TCGA.A6.6648	1	238391154	239080724	341	-0.306	NEUTRAL	NA	0	None
TCGA.A6.2678	1	238443828	249198691	3716	0.0081	NEUTRAL	NA	84	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AZ.6599	1	238582572	249198691	3653	0.0196	NEUTRAL	NA	84	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3982	1	238676994	239009486	188	-0.1052	NEUTRAL	NA	0	None
TCGA.AG.3575	1	238875753	249198691	3508	0.0186	NEUTRAL	NA	84	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3811	1	239012954	245636409	2408	-0.0727	NEUTRAL	NA	25	"ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,CHML,CHRM3,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GREM2,HNRNPU,KIF26B,KMO,MAP1LC3C,OPN3,PLD5,RGS7,SDCCAG8,WDR64,ZBTB18"
TCGA.AA.3982	1	239012954	249198691	3420	0.0651	NEUTRAL	NA	84	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.A6.6648	1	239093238	246840433	2862	-0.0009	NEUTRAL	NA	28	"ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GREM2,HNRNPU,KIF26B,KMO,MAP1LC3C,OPN3,PLD5,RGS7,SDCCAG8,SMYD3,TFB2M,WDR64,ZBTB18"
TCGA.D5.6533	1	239689972	249198691	3204	0.1376	NEUTRAL	NA	84	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3664	1	239900045	240048297	70	-0.0745	NEUTRAL	NA	1	CHRM3
TCGA.D5.6922	1	240055404	249198691	3047	0.2525	NEUTRAL	NA	84	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3850	1	240060327	240427066	183	0.15525	NEUTRAL	NA	2	"CHRM3,FMN2"
TCGA.AA.A00N.01A	1	240070750	240256544	7	-0.2413	NEUTRAL	NA	2	"CHRM3,FMN2"
TCGA.AG.A01W.01A	1	240091303	247111016	325	0.3222	NEUTRAL	NA	30	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,CEP170,CHML,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GREM2,HNRNPU,KIF26B,KMO,MAP1LC3C,OPN3,PLD5,RGS7,SCCPDH,SDCCAG8,SMYD3,TFB2M,WDR64,ZBTB18,ZNF695"
TCGA.AG.A00C.01A	1	240370057	240601322	11	-0.314	NEUTRAL	NA	1	FMN2
TCGA.AA.3850	1	240450141	240612985	83	0.08055	NEUTRAL	NA	1	FMN2
TCGA.AA.3930.01A	1	240555735	240990334	15	0.1831	NEUTRAL	NA	3	"FMN2,GREM2,RGS7"
TCGA.F4.6461	1	240596363	249198691	2774	0.1083	NEUTRAL	NA	83	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AG.A00C.01A	1	240635616	241695675	29	0.1448	NEUTRAL	NA	5	"FH,FMN2,GREM2,KMO,RGS7"
TCGA.AG.A011.01A	1	240656220	240990334	10	0.3274	NEUTRAL	NA	2	"GREM2,RGS7"
TCGA.AA.3850	1	240672299	241050374	147	0.35985	NEUTRAL	NA	2	"GREM2,RGS7"
TCGA.AA.3530	1	240835684	249198691	2668	0.1276	NEUTRAL	NA	81	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CNST,COX20,DESI2,EFCAB2,EXO1,FH,GCSAML,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.A00N.01A	1	241031856	241667290	11	0.3663	NEUTRAL	NA	2	"FH,RGS7"
TCGA.AA.3930.01A	1	241031856	241850721	44	-0.1479	NEUTRAL	NA	6	"CHML,FH,KMO,OPN3,RGS7,WDR64"
TCGA.AG.A011.01A	1	241031856	247654383	311	-0.3373	NEUTRAL	NA	37	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CNST,COX20,DESI2,EFCAB2,EXO1,FH,HNRNPU,KIF26B,KMO,MAP1LC3C,NLRP3,OPN3,OR2B11,OR2W5,PLD5,RGS7,SCCPDH,SDCCAG8,SMYD3,TFB2M,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AA.3494	1	241039521	244069009	1048	-0.4483	NEUTRAL	NA	13	"AKT3,BECN2,CEP170,CHML,EXO1,FH,KMO,MAP1LC3C,OPN3,PLD5,RGS7,SDCCAG8,WDR64"
TCGA.AA.3850	1	241053121	241679473	286	0.00565	NEUTRAL	NA	2	"FH,RGS7"
TCGA.CA.5254	1	241210308	241777805	273	0.2926	NEUTRAL	NA	4	"FH,KMO,OPN3,RGS7"
TCGA.RU.A8FL	1	241586686	249198691	2325	0.2468	NEUTRAL	NA	80	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CNST,COX20,DESI2,EFCAB2,EXO1,FH,GCSAML,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.F5.6813	1	241671637	242053654	181	-0.0705	NEUTRAL	NA	6	"CHML,EXO1,FH,KMO,OPN3,WDR64"
TCGA.AA.A00Q.01A	1	241682844	247081504	229	-0.2771	NEUTRAL	NA	26	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,CEP170,CHML,CNST,COX20,DESI2,EFCAB2,EXO1,FH,HNRNPU,KIF26B,KMO,MAP1LC3C,OPN3,PLD5,SCCPDH,SDCCAG8,SMYD3,TFB2M,WDR64,ZBTB18"
TCGA.CM.5348	1	241706349	241755924	30	-0.174	NEUTRAL	NA	1	KMO
TCGA.AA.3850	1	241711670	241780206	32	0.16495	NEUTRAL	NA	2	"KMO,OPN3"
TCGA.AG.3909.01A	1	241712112	241964384	35	0.0921	NEUTRAL	NA	4	"CHML,KMO,OPN3,WDR64"
TCGA.AG.A00C.01A	1	241712112	241964384	35	-0.2112	NEUTRAL	NA	4	"CHML,KMO,OPN3,WDR64"
TCGA.AA.A02K.01A	1	241712113	241731754	9	-0.2937	NEUTRAL	NA	1	KMO
TCGA.AA.A02K.01A	1	241749964	249210751	380	0.1396	NEUTRAL	NA	80	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CNST,COX20,DESI2,EFCAB2,EXO1,GCSAML,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,PLD5,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.CA.5254	1	241780206	246117190	1453	-0.0235	NEUTRAL	NA	20	"ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,CHML,COX20,DESI2,EFCAB2,EXO1,HNRNPU,KIF26B,MAP1LC3C,OPN3,PLD5,SDCCAG8,SMYD3,WDR64,ZBTB18"
TCGA.AA.3850	1	241807378	241878546	21	-0.05465	NEUTRAL	NA	1	WDR64
TCGA.CK.5914.01A	1	241834329	241964384	25	0.1164	NEUTRAL	NA	1	WDR64
TCGA.AA.3930.01A	1	241875043	242016633	23	0.2352	NEUTRAL	NA	2	"EXO1,WDR64"
TCGA.AA.A010.01A	1	241875043	243858851	93	0.195	NEUTRAL	NA	8	"AKT3,BECN2,CEP170,EXO1,MAP1LC3C,PLD5,SDCCAG8,WDR64"
TCGA.AA.3850	1	241890528	241975146	34	0.25825	NEUTRAL	NA	1	WDR64
TCGA.AA.3850	1	241984594	242378567	152	0.36295	NEUTRAL	NA	4	"BECN2,EXO1,MAP1LC3C,PLD5"
TCGA.AA.3930.01A	1	242020595	242045191	8	-0.0481	NEUTRAL	NA	1	EXO1
TCGA.AG.A00C.01A	1	242024669	244868827	109	-0.041	NEUTRAL	NA	12	"ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,DESI2,EXO1,MAP1LC3C,PLD5,SDCCAG8,ZBTB18"
TCGA.CK.5914.01A	1	242030124	243303199	22	0.1834	NEUTRAL	NA	5	"BECN2,CEP170,EXO1,MAP1LC3C,PLD5"
TCGA.AA.A00F.01A	1	242030124	243589677	32	-0.1283	NEUTRAL	NA	6	"BECN2,CEP170,EXO1,MAP1LC3C,PLD5,SDCCAG8"
TCGA.AG.3909.01A	1	242035293	244868827	110	-0.0966	NEUTRAL	NA	12	"ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,DESI2,EXO1,MAP1LC3C,PLD5,SDCCAG8,ZBTB18"
TCGA.A6.3808.01A	1	242035293	246939800	198	-0.4006	NEUTRAL	NA	20	"ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,CNST,COX20,DESI2,EFCAB2,EXO1,HNRNPU,KIF26B,MAP1LC3C,PLD5,SCCPDH,SDCCAG8,SMYD3,TFB2M,ZBTB18"
TCGA.AA.3930.01A	1	242048569	243354303	27	-0.3647	NEUTRAL	NA	5	"BECN2,CEP170,EXO1,MAP1LC3C,PLD5"
TCGA.F5.6813	1	242055268	246670029	1526	0.3164	NEUTRAL	NA	16	"ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,COX20,DESI2,EFCAB2,HNRNPU,KIF26B,MAP1LC3C,PLD5,SDCCAG8,SMYD3,ZBTB18"
TCGA.AA.3519	1	242301362	249198691	2064	-0.3289	NEUTRAL	NA	72	"ADSS,AHCTF1,AKT3,C1orf100,C1orf101,C1orf229,CEP170,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3850	1	242381527	243598669	382	0.04135	NEUTRAL	NA	3	"CEP170,PLD5,SDCCAG8"
TCGA.D5.6539	1	243054701	243282483	19	-0.3428	NEUTRAL	NA	0	None
TCGA.AF.A56N	1	243135254	249198691	1683	-0.2677	NEUTRAL	NA	71	"ADSS,AHCTF1,AKT3,C1orf100,C1orf101,C1orf229,CEP170,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.D5.6539	1	243297396	249198691	1676	0.1453	NEUTRAL	NA	71	"ADSS,AHCTF1,AKT3,C1orf100,C1orf101,C1orf229,CEP170,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.CK.5914.01A	1	243305572	243675606	34	-0.2206	NEUTRAL	NA	3	"AKT3,CEP170,SDCCAG8"
TCGA.AA.A00L.01A	1	243467950	243507485	6	0.3511	NEUTRAL	NA	1	SDCCAG8
TCGA.AA.A00L.01A	1	243541975	248097024	216	-0.371	NEUTRAL	NA	38	"ADSS,AHCTF1,AKT3,C1orf100,C1orf101,C1orf229,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,NLRP3,OR11L1,OR13G1,OR14A16,OR1C1,OR2B11,OR2C3,OR2G2,OR2G3,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SDCCAG8,SMYD3,TFB2M,TRIM58,VN1R5,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AA.3979	1	243573388	249198691	1638	0.0123	NEUTRAL	NA	70	"ADSS,AHCTF1,AKT3,C1orf100,C1orf101,C1orf229,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3850	1	243603131	243767492	42	0.33585	NEUTRAL	NA	2	"AKT3,SDCCAG8"
TCGA.AA.3862.01A	1	243662965	246939800	147	0.3181	NEUTRAL	NA	15	"ADSS,AKT3,C1orf100,C1orf101,CNST,COX20,DESI2,EFCAB2,HNRNPU,KIF26B,SCCPDH,SDCCAG8,SMYD3,TFB2M,ZBTB18"
TCGA.AA.A00F.01A	1	243675606	244868827	56	-0.0331	NEUTRAL	NA	6	"ADSS,AKT3,C1orf100,C1orf101,DESI2,ZBTB18"
TCGA.CK.5914.01A	1	243708757	244006352	11	0.2624	NEUTRAL	NA	1	AKT3
TCGA.AA.3850	1	243803676	244125725	49	-0.19115	NEUTRAL	NA	1	AKT3
TCGA.AA.3494	1	244083570	249198691	1545	-0.014	NEUTRAL	NA	68	"ADSS,AHCTF1,C1orf100,C1orf101,C1orf229,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3850	1	244134387	246292813	828	0.29815	NEUTRAL	NA	10	"ADSS,C1orf100,C1orf101,COX20,DESI2,EFCAB2,HNRNPU,KIF26B,SMYD3,ZBTB18"
TCGA.AA.3967.01A	1	244214652	245765842	70	0.3005	NEUTRAL	NA	9	"ADSS,C1orf100,C1orf101,COX20,DESI2,EFCAB2,HNRNPU,KIF26B,ZBTB18"
TCGA.AA.3930.01A	1	244218106	244574547	8	0.1121	NEUTRAL	NA	3	"ADSS,C1orf100,ZBTB18"
TCGA.DM.A1HB	1	244399899	249198691	1398	0.0156	NEUTRAL	NA	67	"ADSS,AHCTF1,C1orf100,C1orf101,C1orf229,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.A00N.01A	1	244527932	244587600	13	0.0643	NEUTRAL	NA	2	"ADSS,C1orf100"
TCGA.AA.A010.01A	1	244527932	244999703	46	0.227	NEUTRAL	NA	5	"ADSS,C1orf100,C1orf101,COX20,DESI2"
TCGA.CK.5914.01A	1	244538625	244574547	5	-0.3084	NEUTRAL	NA	2	"ADSS,C1orf100"
TCGA.AA.3930.01A	1	244579252	244868827	39	-0.5098	NEUTRAL	NA	3	"ADSS,C1orf101,DESI2"
TCGA.CK.5914.01A	1	244600060	244868827	30	-0.2935	NEUTRAL	NA	3	"ADSS,C1orf101,DESI2"
TCGA.AH.6549.01A	1	244627133	249213943	272	0.1069	NEUTRAL	NA	66	"AHCTF1,C1orf101,C1orf229,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.A00N.01A	1	244798716	244998941	9	-0.2556	NEUTRAL	NA	3	"C1orf101,COX20,DESI2"
TCGA.AA.3930.01A	1	244998941	247200739	133	0.0154	NEUTRAL	NA	11	"AHCTF1,CNST,COX20,EFCAB2,HNRNPU,KIF26B,SCCPDH,SMYD3,TFB2M,ZNF670,ZNF695"
TCGA.AG.A008.01A	1	245025716	249210793	209	0.1379	NEUTRAL	NA	63	"AHCTF1,C1orf229,CNST,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.A00N.01A	1	245026867	246091232	32	0.3029	NEUTRAL	NA	4	"EFCAB2,HNRNPU,KIF26B,SMYD3"
TCGA.AG.3909.01A	1	245026867	246093116	30	0.0556	NEUTRAL	NA	4	"EFCAB2,HNRNPU,KIF26B,SMYD3"
TCGA.CK.5914.01A	1	245026867	246714468	44	0.0892	NEUTRAL	NA	5	"EFCAB2,HNRNPU,KIF26B,SMYD3,TFB2M"
TCGA.AG.A00C.01A	1	245026867	247070853	91	0.0083	NEUTRAL	NA	8	"AHCTF1,CNST,EFCAB2,HNRNPU,KIF26B,SCCPDH,SMYD3,TFB2M"
TCGA.AG.4009.01A	1	245026867	248813185	187	-0.1695	NEUTRAL	NA	56	"AHCTF1,C1orf229,CNST,EFCAB2,GCSAML,HNRNPU,KIF26B,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AA.A00F.01A	1	245026867	249210793	190	0.0163	NEUTRAL	NA	63	"AHCTF1,C1orf229,CNST,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.CK.5912	1	245646349	249158238	996	-0.1143	NEUTRAL	NA	60	"AHCTF1,C1orf229,CNST,GCSAML,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3811	1	245649650	247875414	749	0.1157	NEUTRAL	NA	22	"AHCTF1,C1orf229,CNST,GCSAML,KIF26B,NLRP3,OR13G1,OR2B11,OR2C3,OR2G2,OR2G3,OR2W5,OR6F1,SCCPDH,SMYD3,TFB2M,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.CM.5864	1	245650747	249198691	1004	0.2722	NEUTRAL	NA	60	"AHCTF1,C1orf229,CNST,GCSAML,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3967.01A	1	245770912	246093116	16	-0.3249	NEUTRAL	NA	2	"KIF26B,SMYD3"
TCGA.AG.A02X.01A	1	245772530	247491963	103	0.2411	NEUTRAL	NA	13	"AHCTF1,C1orf229,CNST,KIF26B,SCCPDH,SMYD3,TFB2M,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AA.A00N.01A	1	246093116	246943545	43	-0.4589	NEUTRAL	NA	4	"CNST,SCCPDH,SMYD3,TFB2M"
TCGA.AA.3488	1	246158490	246515574	135	-0.1244	NEUTRAL	NA	1	SMYD3
TCGA.DC.6682	1	246161576	246273144	50	-0.4569	NEUTRAL	NA	1	SMYD3
TCGA.DC.6682	1	246281585	246416120	50	-0.4792	NEUTRAL	NA	1	SMYD3
TCGA.AA.3850	1	246303127	246494557	63	0.07695	NEUTRAL	NA	1	SMYD3
TCGA.AA.3941	1	246303127	246494557	63	0.2213	NEUTRAL	NA	1	SMYD3
TCGA.DC.6682	1	246418781	249198691	665	-0.0746	NEUTRAL	NA	59	"AHCTF1,C1orf229,CNST,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AZ.4614	1	246441420	249198691	652	0.0832	NEUTRAL	NA	59	"AHCTF1,C1orf229,CNST,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.CA.5254	1	246476859	249198691	645	-0.0124	NEUTRAL	NA	59	"AHCTF1,C1orf229,CNST,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3967.01A	1	246490464	247241797	74	0.1595	NEUTRAL	NA	7	"AHCTF1,CNST,SCCPDH,SMYD3,TFB2M,ZNF670,ZNF695"
TCGA.AA.3488	1	246525618	249198691	636	0.3257	NEUTRAL	NA	59	"AHCTF1,C1orf229,CNST,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.F5.6813	1	246677396	246840365	45	-0.0936	NEUTRAL	NA	2	"CNST,TFB2M"
TCGA.F5.6813	1	246840433	249198691	543	0.3358	NEUTRAL	NA	56	"AHCTF1,C1orf229,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.A6.6648	1	246874874	249198691	533	0.0152	NEUTRAL	NA	56	"AHCTF1,C1orf229,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.DC.6683	1	246885580	249198691	530	0.0087	NEUTRAL	NA	56	"AHCTF1,C1orf229,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.A6.6653	1	246892825	249198691	531	0.035	NEUTRAL	NA	56	"AHCTF1,C1orf229,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.CK.5914.01A	1	246907304	247109015	47	0.0486	NEUTRAL	NA	3	"AHCTF1,SCCPDH,ZNF695"
TCGA.AA.A010.01A	1	246921489	247007050	15	0.029	NEUTRAL	NA	2	"AHCTF1,SCCPDH"
TCGA.AG.3909.01A	1	246921489	247079417	37	0.0334	NEUTRAL	NA	2	"AHCTF1,SCCPDH"
TCGA.AA.A010.01A	1	247048754	247059086	8	-0.0071	NEUTRAL	NA	1	AHCTF1
TCGA.AG.A00C.01A	1	247076492	247322942	19	0.329	NEUTRAL	NA	6	"AHCTF1,C1orf229,ZNF124,ZNF669,ZNF670,ZNF695"
TCGA.AG.A01W.01A	1	247114710	247177374	8	-0.1422	NEUTRAL	NA	1	ZNF695
TCGA.AA.A010.01A	1	247150250	247463814	21	0.0353	NEUTRAL	NA	7	"C1orf229,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AA.3861.01A	1	247171109	247719641	37	-0.3577	NEUTRAL	NA	12	"C1orf229,GCSAML,NLRP3,OR2B11,OR2C3,OR2W5,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AA.3862.01A	1	247171109	247719641	36	0.0083	NEUTRAL	NA	12	"C1orf229,GCSAML,NLRP3,OR2B11,OR2C3,OR2W5,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AA.A00Q.01A	1	247200739	247875089	43	-0.316	NEUTRAL	NA	14	"C1orf229,GCSAML,NLRP3,OR13G1,OR2B11,OR2C3,OR2G2,OR2G3,OR2W5,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670"
TCGA.AA.A00A.01A	1	247200739	248097024	55	-0.3659	NEUTRAL	NA	21	"C1orf229,GCSAML,NLRP3,OR11L1,OR13G1,OR14A16,OR1C1,OR2B11,OR2C3,OR2G2,OR2G3,OR2T8,OR2W3,OR2W5,OR6F1,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670"
TCGA.AA.A00D.01A	1	247200739	248097024	55	-0.3801	NEUTRAL	NA	21	"C1orf229,GCSAML,NLRP3,OR11L1,OR13G1,OR14A16,OR1C1,OR2B11,OR2C3,OR2G2,OR2G3,OR2T8,OR2W3,OR2W5,OR6F1,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670"
TCGA.AA.3815.01A	1	247267201	249213943	104	-0.0163	NEUTRAL	NA	53	"C1orf229,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,SH3BP5L,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF672,ZNF692"
TCGA.AA.3967.01A	1	247319847	248039204	45	0.2314	NEUTRAL	NA	16	"GCSAML,NLRP3,OR11L1,OR13G1,OR14A16,OR1C1,OR2B11,OR2C3,OR2G2,OR2G3,OR2W5,OR6F1,TRIM58,VN1R5,ZNF124,ZNF496"
TCGA.AA.A01I.01A	1	247319847	249210793	100	0.03	NEUTRAL	NA	51	"GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,SH3BP5L,TRIM58,VN1R5,ZNF124,ZNF496,ZNF672,ZNF692"
TCGA.AA.3930.01A	1	247319847	249213943	106	-0.0247	NEUTRAL	NA	51	"GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,SH3BP5L,TRIM58,VN1R5,ZNF124,ZNF496,ZNF672,ZNF692"
TCGA.AG.A00C.01A	1	247419356	248039204	41	-0.0346	NEUTRAL	NA	15	"GCSAML,NLRP3,OR11L1,OR13G1,OR14A16,OR1C1,OR2B11,OR2C3,OR2G2,OR2G3,OR2W5,OR6F1,TRIM58,VN1R5,ZNF496"
TCGA.AG.A02X.01A	1	247492439	247694800	15	-0.4973	NEUTRAL	NA	6	"GCSAML,NLRP3,OR2B11,OR2C3,OR2W5,ZNF496"
TCGA.CK.5914.01A	1	247492439	248343601	48	0.0345	NEUTRAL	NA	24	"GCSAML,NLRP3,OR11L1,OR13G1,OR14A16,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M5,OR2T8,OR2W3,OR2W5,OR6F1,TRIM58,ZNF496"
TCGA.AG.3909.01A	1	247492439	248813185	72	0.1901	NEUTRAL	NA	42	"GCSAML,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,TRIM58,ZNF496"
TCGA.AA.3850	1	247636905	247975556	100	-0.27715	NEUTRAL	NA	8	"GCSAML,OR13G1,OR1C1,OR2C3,OR2G2,OR2G3,OR2W5,OR6F1"
TCGA.AA.3941	1	247652602	249198691	314	-0.1383	NEUTRAL	NA	45	"GCSAML,LYPD8,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SH3BP5L,TRIM58,ZNF672,ZNF692"
TCGA.AA.A010.01A	1	247654383	249142402	68	0.0799	NEUTRAL	NA	44	"GCSAML,LYPD8,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SH3BP5L,TRIM58,ZNF672"
TCGA.AG.A011.01A	1	247694800	247835423	9	0.3165	NEUTRAL	NA	5	"GCSAML,OR13G1,OR2C3,OR2G2,OR2G3"
TCGA.AG.A02X.01A	1	247712412	248756101	53	0.2637	NEUTRAL	NA	34	"GCSAML,OR11L1,OR13G1,OR14A16,OR14C36,OR1C1,OR2AK2,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR6F1,TRIM58"
TCGA.AG.A00Y.01A	1	247751611	248844703	53	-0.2335	NEUTRAL	NA	38	"OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR6F1,TRIM58"
TCGA.AA.3844	1	247786404	248795851	223	-0.3536	NEUTRAL	NA	33	"OR11L1,OR13G1,OR14A16,OR14C36,OR1C1,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR6F1,TRIM58"
TCGA.AG.3611.01A	1	247875089	248020500	8	-0.0265	NEUTRAL	NA	5	"OR11L1,OR14A16,OR1C1,OR6F1,TRIM58"
TCGA.AG.A011.01A	1	247875089	248512046	30	-0.4298	NEUTRAL	NA	20	"OR11L1,OR14A16,OR1C1,OR2AK2,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T12,OR2T33,OR2T8,OR2W3,OR6F1,TRIM58"
TCGA.AA.3811	1	247877445	248595680	204	-0.2868	NEUTRAL	NA	23	"OR11L1,OR14A16,OR14C36,OR1C1,OR2AK2,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T12,OR2T33,OR2T4,OR2T6,OR2T8,OR2W3,TRIM58"
TCGA.AA.A00Q.01A	1	247886351	248020500	7	0.3722	NEUTRAL	NA	4	"OR11L1,OR14A16,OR1C1,TRIM58"
TCGA.AA.A01F.01A	1	247886351	248027970	9	-0.2003	NEUTRAL	NA	4	"OR11L1,OR14A16,OR1C1,TRIM58"
TCGA.AA.A00Q.01A	1	248023869	248569309	28	-0.3836	NEUTRAL	NA	20	"OR14C36,OR2AK2,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T12,OR2T33,OR2T4,OR2T6,OR2T8,OR2W3,TRIM58"
TCGA.AA.A01F.01A	1	248031078	249144597	50	0.1927	NEUTRAL	NA	35	"LYPD8,OR14C36,OR14I1,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,SH3BP5L,TRIM58,ZNF672,ZNF692"
TCGA.AG.A00C.01A	1	248058883	248813185	37	-0.4108	NEUTRAL	NA	28	"OR14C36,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3"
TCGA.AA.3967.01A	1	248058883	249210793	56	-0.1515	NEUTRAL	NA	35	"LYPD8,OR14C36,OR14I1,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.3850	1	248076268	248428226	78	-0.40165	NEUTRAL	NA	11	"OR2AK2,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2T8"
TCGA.F4.6570	1	248080420	248098454	6	-0.4278	NEUTRAL	NA	1	OR2T8
TCGA.F4.6570	1	248104451	249198691	162	-0.0021	NEUTRAL	NA	32	"LYPD8,OR14C36,OR14I1,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.3850	1	248434302	249198691	92	-0.11735	NEUTRAL	NA	22	"LYPD8,OR14C36,OR14I1,OR2G6,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,SH3BP5L,ZNF672,ZNF692"
TCGA.AG.A011.01A	1	248524835	249210793	38	0.2232	NEUTRAL	NA	19	"LYPD8,OR14I1,OR2G6,OR2T1,OR2T10,OR2T11,OR2T2,OR2T27,OR2T29,OR2T3,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.A00Q.01A	1	248616098	249107151	16	-0.0501	NEUTRAL	NA	13	"LYPD8,OR14I1,OR2G6,OR2T10,OR2T11,OR2T2,OR2T27,OR2T29,OR2T3,OR2T34,OR2T35,OR2T5,SH3BP5L"
TCGA.AA.A00A.01A	1	248616098	249210793	32	-0.459	NEUTRAL	NA	16	"LYPD8,OR14I1,OR2G6,OR2T10,OR2T11,OR2T2,OR2T27,OR2T29,OR2T3,OR2T34,OR2T35,OR2T5,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.NH.A50U	1	248621162	249198691	51	-0.4903	NEUTRAL	NA	14	"LYPD8,OR14I1,OR2G6,OR2T10,OR2T11,OR2T27,OR2T29,OR2T3,OR2T34,OR2T35,OR2T5,SH3BP5L,ZNF672,ZNF692"
TCGA.NH.A6GC	1	248621162	249198691	51	-0.0159	NEUTRAL	NA	14	"LYPD8,OR14I1,OR2G6,OR2T10,OR2T11,OR2T27,OR2T29,OR2T3,OR2T34,OR2T35,OR2T5,SH3BP5L,ZNF672,ZNF692"
TCGA.CK.5914.01A	1	248756101	249110724	10	0.0133	NEUTRAL	NA	7	"LYPD8,OR14I1,OR2T10,OR2T11,OR2T27,OR2T35,SH3BP5L"
TCGA.AA.A00D.01A	1	248756101	249210793	23	-0.4529	NEUTRAL	NA	10	"LYPD8,OR14I1,OR2T10,OR2T11,OR2T27,OR2T35,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AF.3914.01A	1	248789431	249210793	23	-0.3663	NEUTRAL	NA	9	"LYPD8,OR14I1,OR2T11,OR2T27,OR2T35,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AG.A02G.01A	1	248801539	249210793	20	-0.3358	NEUTRAL	NA	8	"LYPD8,OR14I1,OR2T27,OR2T35,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.3811	1	248808556	249198691	48	0.0885	NEUTRAL	NA	6	"LYPD8,OR14I1,OR2T27,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.3844	1	248808556	249198691	49	0.0798	NEUTRAL	NA	6	"LYPD8,OR14I1,OR2T27,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.A01Q.01A	1	248844703	249148086	13	-0.4168	NEUTRAL	NA	5	"LYPD8,OR14I1,SH3BP5L,ZNF672,ZNF692"
TCGA.AG.3611.01A	1	248844703	249210793	19	0.0018	NEUTRAL	NA	6	"LYPD8,OR14I1,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AG.A00C.01A	1	248844703	249210793	20	0.216	NEUTRAL	NA	6	"LYPD8,OR14I1,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.G4.6323	1	248845096	249198691	48	0.0616	NEUTRAL	NA	5	"LYPD8,OR14I1,SH3BP5L,ZNF672,ZNF692"
TCGA.A6.3808.01A	1	248902915	249213943	23	0.167	NEUTRAL	NA	5	"LYPD8,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.3861.01A	1	248902915	249213943	23	-0.0086	NEUTRAL	NA	5	"LYPD8,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.3862.01A	1	248902915	249213943	23	0.2305	NEUTRAL	NA	5	"LYPD8,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.CM.6162	1	249075376	249198691	32	-0.3879	NEUTRAL	NA	3	"SH3BP5L,ZNF672,ZNF692"
TCGA.AG.A00Y.01A	1	249106057	249210793	19	0.3441	NEUTRAL	NA	4	"PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AY.6196	1	249115068	249198691	19	0.0422	NEUTRAL	NA	3	"SH3BP5L,ZNF672,ZNF692"
TCGA.AG.A01N.01A	1	249141493	249210793	13	-0.4048	NEUTRAL	NA	3	"PGBD2,ZNF672,ZNF692"
TCGA.AG.A023.01A	1	249143024	249210793	11	-0.2908	NEUTRAL	NA	3	"PGBD2,ZNF672,ZNF692"
TCGA.AA.A01F.01A	1	249148086	249210793	7	-0.1403	NEUTRAL	NA	2	"PGBD2,ZNF692"
TCGA.AA.A01Q.01A	1	249149542	249210793	6	0.0468	NEUTRAL	NA	2	"PGBD2,ZNF692"
TCGA.AG.A015.01A	1	249149542	249210793	7	-0.1411	NEUTRAL	NA	2	"PGBD2,ZNF692"
TCGA.AA.3980.01A	1	249151401	249213943	8	-0.0076	NEUTRAL	NA	2	"PGBD2,ZNF692"
TCGA.CK.5912	1	249167222	249198691	10	0.2803	NEUTRAL	NA	0	None
TCGA.AU.3779	1	249170710	249198691	6	-0.4135	NEUTRAL	NA	0	None
TCGA.D5.6535	1	249190890	249198691	5	-0.1246	NEUTRAL	NA	0	None
TCGA.EI.6506	1	249190890	249198691	5	-0.2801	NEUTRAL	NA	0	None
TCGA.DM.A28H	2	21832	86643	13	-0.0747	NEUTRAL	NA	1	FAM110C
TCGA.G4.6303	2	21832	86643	13	0.0223	NEUTRAL	NA	1	FAM110C
TCGA.CK.6746	2	21832	173149	35	-0.0406	NEUTRAL	NA	1	FAM110C
TCGA.AG.3882	2	21832	174271	36	0.0738	NEUTRAL	NA	1	FAM110C
TCGA.AZ.6601	2	21832	936686	332	-0.054	NEUTRAL	NA	5	"ACP1,FAM110C,FAM150B,SH3YL1,TMEM18"
TCGA.AA.3844	2	21832	950474	337	0.078	NEUTRAL	NA	6	"ACP1,FAM110C,FAM150B,SH3YL1,SNTG2,TMEM18"
TCGA.AZ.6608	2	21832	2314996	728	0.2981	NEUTRAL	NA	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AA.3850	2	21832	2356685	745	0.34675	NEUTRAL	NA	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.DM.A1HB	2	21832	2774891	944	0.0015	NEUTRAL	NA	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AA.3819	2	21832	2795205	976	0.011	NEUTRAL	NA	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AA.3976	2	21832	3106879	1120	-0.1194	NEUTRAL	NA	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AM.5820	2	21832	3339075	1223	0.1577	NEUTRAL	NA	10	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO,TSSC1"
TCGA.F4.6807	2	21832	3997423	1482	-0.035	NEUTRAL	NA	17	"ACP1,ADI1,ALLC,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.G4.6317	2	21832	4150067	1551	-0.0227	NEUTRAL	NA	17	"ACP1,ADI1,ALLC,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.3530	2	21832	4957343	1907	0.0991	NEUTRAL	NA	17	"ACP1,ADI1,ALLC,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.3685	2	21832	5610162	2149	0.1255	NEUTRAL	NA	17	"ACP1,ADI1,ALLC,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.DC.5337	2	21832	5735726	2190	-0.0309	NEUTRAL	NA	17	"ACP1,ADI1,ALLC,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.NH.A6GC	2	21832	6298133	2502	0.292	NEUTRAL	NA	18	"ACP1,ADI1,ALLC,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.DC.4749	2	21832	6639367	2702	-0.062	NEUTRAL	NA	18	"ACP1,ADI1,ALLC,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.EI.6883	2	21832	7512641	3134	-0.0548	NEUTRAL	NA	21	"ACP1,ADI1,ALLC,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AF.A56K	2	21832	8287949	3455	0.1715	NEUTRAL	NA	21	"ACP1,ADI1,ALLC,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.BM.6198	2	21832	8497068	3554	0.37365	NEUTRAL	NA	21	"ACP1,ADI1,ALLC,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.3952	2	21832	9449023	3898	-0.0053	NEUTRAL	NA	25	"ACP1,ADI1,ALLC,ASAP2,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,ID2,KIDINS220,MBOAT2,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AZ.4616	2	21832	10790958	4387	0.1832	NEUTRAL	NA	39	"ACP1,ADAM17,ADI1,ALLC,ASAP2,C2orf48,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,FAM110C,FAM150B,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KIDINS220,KLF11,MBOAT2,MYT1L,NOL10,ODC1,PXDN,RNASEH1,RNF144A,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AA.3543	2	21832	10987114	4469	-0.1022	NEUTRAL	NA	41	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,FAM110C,FAM150B,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KIDINS220,KLF11,MBOAT2,MYT1L,NOL10,ODC1,PDIA6,PXDN,RNASEH1,RNF144A,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AA.3982	2	21832	12095887	4893	0.1208	NEUTRAL	NA	49	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AA.3811	2	21832	13130862	5401	0.1778	NEUTRAL	NA	50	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.F4.6459	2	21832	13788407	5601	-0.0987	NEUTRAL	NA	50	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AA.3680	2	21832	14383106	5808	-0.0257	NEUTRAL	NA	50	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AG.3727	2	21832	14452183	5831	-0.0234	NEUTRAL	NA	50	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.G4.6626	2	21832	14503409	5846	-0.1036	NEUTRAL	NA	50	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.F4.6704	2	21832	14702348	5920	0.0542	NEUTRAL	NA	50	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.CA.5254	2	21832	15183278	6109	-0.0367	NEUTRAL	NA	52	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.A6.5665	2	21832	15756915	6291	-0.215	NEUTRAL	NA	54	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MYT1L,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AG.3591	2	21832	17673790	7048	0.1083	NEUTRAL	NA	56	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MYCN,MYT1L,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AA.3972	2	21832	17674792	7040	0.0529	NEUTRAL	NA	56	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MYCN,MYT1L,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AZ.4614	2	21832	17914055	7012	-0.012	NEUTRAL	NA	59	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MYCN,MYT1L,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RAD51AP2,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,VSNL1,YWHAQ"
TCGA.AG.3890	2	21832	18368354	7288	-0.0495	NEUTRAL	NA	62	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RAD51AP2,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,VSNL1,YWHAQ"
TCGA.AA.A01Z	2	21832	18375768	7314	-0.0282	NEUTRAL	NA	62	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RAD51AP2,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,VSNL1,YWHAQ"
TCGA.AA.3872	2	21832	18452345	7357	0.0926	NEUTRAL	NA	62	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RAD51AP2,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,VSNL1,YWHAQ"
TCGA.AY.5543	2	21832	18803825	7483	-0.0387	NEUTRAL	NA	65	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RAD51AP2,RDH14,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,VSNL1,YWHAQ"
TCGA.AG.4021	2	21832	20388958	8226	-0.0349	NEUTRAL	NA	70	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LAPTM4A,LOC653602,LPIN1,MATN3,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PQLC3,PXDN,RAD51AP2,RDH14,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,TTC32,VSNL1,WDR35,YWHAQ"
TCGA.5M.AAT4	2	21832	20762925	8363	0.3329	NEUTRAL	NA	73	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LAPTM4A,LOC653602,LPIN1,MATN3,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PQLC3,PUM2,PXDN,RAD51AP2,RDH14,RHOB,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SDC1,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,TTC32,VSNL1,WDR35,YWHAQ"
TCGA.AH.6544	2	21832	21301891	8547	-0.3007	NEUTRAL	NA	77	"ACP1,ADAM17,ADI1,ALLC,APOB,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GDF7,GEN1,GREB1,GRHL1,HPCAL1,HS1BP3,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LAPTM4A,LDAH,LOC653602,LPIN1,MATN3,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PQLC3,PUM2,PXDN,RAD51AP2,RDH14,RHOB,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SDC1,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,TTC32,VSNL1,WDR35,YWHAQ"
TCGA.A6.2678	2	21832	23526279	9244	-0.0195	NEUTRAL	NA	78	"ACP1,ADAM17,ADI1,ALLC,APOB,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GDF7,GEN1,GREB1,GRHL1,HPCAL1,HS1BP3,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LAPTM4A,LDAH,LOC653602,LPIN1,MATN3,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PQLC3,PUM2,PXDN,RAD51AP2,RDH14,RHOB,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SDC1,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TDRD15,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,TTC32,VSNL1,WDR35,YWHAQ"
TCGA.DM.A288	2	21832	26724441	9923	-0.4252	NEUTRAL	NA	109	Too-Many
TCGA.DY.A1H8	2	21832	27833751	10161	-0.0194	NEUTRAL	NA	146	Too-Many
TCGA.AY.A71X	2	21832	28585155	10302	-0.0354	NEUTRAL	NA	153	Too-Many
TCGA.A6.5666	2	21832	29070804	10447	0.2477	NEUTRAL	NA	157	Too-Many
TCGA.5M.AATE	2	21832	29278905	10527	0.2084	NEUTRAL	NA	160	Too-Many
TCGA.F5.6864	2	21832	30061082	10909	0.1386	NEUTRAL	NA	163	Too-Many
TCGA.AD.6899	2	21832	30614882	11083	0.0981	NEUTRAL	NA	165	Too-Many
TCGA.AG.3892	2	21832	30974574	11218	-0.0279	NEUTRAL	NA	167	Too-Many
TCGA.AG.A026	2	21832	33203117	11834	-0.0214	NEUTRAL	NA	181	Too-Many
TCGA.A6.2681	2	21832	33387539	11919	-0.0072	NEUTRAL	NA	181	Too-Many
TCGA.AA.3556	2	21832	34427632	12389	-0.0147	NEUTRAL	NA	183	Too-Many
TCGA.EI.7002	2	21832	34691068	12530	-0.0445	NEUTRAL	NA	183	Too-Many
TCGA.T9.A92H	2	21832	35050077	12653	0.0048	NEUTRAL	NA	183	Too-Many
TCGA.AA.3867	2	21832	35261103	12731	0.1668	NEUTRAL	NA	183	Too-Many
TCGA.A6.6653	2	21832	37363967	13636	-0.0221	NEUTRAL	NA	190	Too-Many
TCGA.AA.3494	2	21832	37464510	13647	-0.4577	NEUTRAL	NA	193	Too-Many
TCGA.AA.3519	2	21832	39104558	14361	0.1482	NEUTRAL	NA	205	Too-Many
TCGA.CM.4746	2	21832	41400775	15211	-0.0091	NEUTRAL	NA	212	Too-Many
TCGA.AF.2689	2	21832	42708404	15823	-0.4166	NEUTRAL	NA	217	Too-Many
TCGA.F4.6461	2	21832	42767043	15792	-0.0228	NEUTRAL	NA	218	Too-Many
TCGA.AG.3898	2	21832	42867607	15806	-0.0061	NEUTRAL	NA	218	Too-Many
TCGA.AA.3979	2	21832	43095870	15874	-0.0124	NEUTRAL	NA	220	Too-Many
TCGA.EI.6508	2	21832	43165146	15983	-0.0193	NEUTRAL	NA	220	Too-Many
TCGA.D5.6932	2	21832	43412032	16060	0.1326	NEUTRAL	NA	220	Too-Many
TCGA.F5.6863	2	21832	46559237	17400	-0.0052	NEUTRAL	NA	237	Too-Many
TCGA.CM.5348	2	21832	46724177	17507	0.2862	NEUTRAL	NA	238	Too-Many
TCGA.AH.6897	2	21832	47377471	17774	0.2839	NEUTRAL	NA	246	Too-Many
TCGA.AA.3693	2	21832	47666837	17879	-0.0472	NEUTRAL	NA	249	Too-Many
TCGA.AA.3864	2	21832	49353993	18345	0.0283	NEUTRAL	NA	259	Too-Many
TCGA.AA.3866	2	21832	52738011	19572	0.0658	NEUTRAL	NA	260	Too-Many
TCGA.AZ.6599	2	21832	54260131	20235	-0.0179	NEUTRAL	NA	266	Too-Many
TCGA.D5.6533	2	21832	55080622	20482	-0.0141	NEUTRAL	NA	271	Too-Many
TCGA.EI.6511	2	21832	58833477	21765	-0.0069	NEUTRAL	NA	283	Too-Many
TCGA.DC.6154	2	21832	61032180	22541	-0.0497	NEUTRAL	NA	285	Too-Many
TCGA.DM.A28F	2	21832	63471265	22942	-0.0256	NEUTRAL	NA	301	Too-Many
TCGA.F4.6806	2	21832	63525101	22911	-0.014	NEUTRAL	NA	301	Too-Many
TCGA.AG.3584	2	21832	64145778	23064	-0.0186	NEUTRAL	NA	304	Too-Many
TCGA.AA.3841	2	21832	70943417	25622	0.0122	NEUTRAL	NA	345	Too-Many
TCGA.AA.3856	2	21832	72455336	26117	-0.017	NEUTRAL	NA	360	Too-Many
TCGA.G4.6294	2	21832	75419744	26772	-0.0385	NEUTRAL	NA	407	Too-Many
TCGA.4N.A93T	2	21832	76153087	27046	0.0014	NEUTRAL	NA	410	Too-Many
TCGA.AD.6965	2	21832	76522462	27121	0.045	NEUTRAL	NA	410	Too-Many
TCGA.DY.A1DG	2	21832	76630435	27210	0.3378	NEUTRAL	NA	410	Too-Many
TCGA.A6.2677	2	21832	77038540	25081	0.0404	NEUTRAL	NA	411	Too-Many
TCGA.AG.3592	2	21832	77501616	27506	-0.0281	NEUTRAL	NA	411	Too-Many
TCGA.AZ.6606	2	21832	77520872	27427	0.0024	NEUTRAL	NA	411	Too-Many
TCGA.DM.A0X9	2	21832	77687100	27531	-0.016	NEUTRAL	NA	411	Too-Many
TCGA.D5.5538	2	21832	77781488	27567	-0.0033	NEUTRAL	NA	411	Too-Many
TCGA.AG.4008	2	21832	77873168	27405	-0.0068	NEUTRAL	NA	411	Too-Many
TCGA.CM.5349	2	21832	77916761	27598	-0.0211	NEUTRAL	NA	411	Too-Many
TCGA.D5.6532	2	21832	78005583	27628	-0.0153	NEUTRAL	NA	411	Too-Many
TCGA.EI.7004	2	21832	78026614	27596	0.0117	NEUTRAL	NA	411	Too-Many
TCGA.QL.A97D	2	21832	78085003	27654	-0.1148	NEUTRAL	NA	411	Too-Many
TCGA.AA.3529	2	21832	78313045	27703	-0.0146	NEUTRAL	NA	411	Too-Many
TCGA.A6.4105	2	21832	78484700	27771	0.1041	NEUTRAL	NA	411	Too-Many
TCGA.AF.2693	2	21832	80119937	28438	-0.0135	NEUTRAL	NA	416	Too-Many
TCGA.EI.6881	2	21832	81031959	28765	0.0071	NEUTRAL	NA	417	Too-Many
TCGA.G4.6295	2	21832	87056804	30308	0.3147	NEUTRAL	NA	452	Too-Many
TCGA.AA.3558	2	21832	87376943	30302	-0.0352	NEUTRAL	NA	456	Too-Many
TCGA.5M.AATA	2	21832	89124237	30488	0.0358	NEUTRAL	NA	464	Too-Many
TCGA.CK.5913	2	21832	89598695	30474	-0.0116	NEUTRAL	NA	464	Too-Many
TCGA.NH.A50U	2	21832	89620836	30491	-0.0296	NEUTRAL	NA	464	Too-Many
TCGA.D5.6926	2	21832	91618894	30475	0.006	NEUTRAL	NA	464	Too-Many
TCGA.AA.3696	2	21832	91925460	30549	-0.0243	NEUTRAL	NA	464	Too-Many
TCGA.AF.6136	2	21832	95592864	30502	-0.3017	NEUTRAL	NA	465	Too-Many
TCGA.AA.3660	2	21832	96422938	30577	-0.0238	NEUTRAL	NA	474	Too-Many
TCGA.AA.3975	2	21832	96795856	30552	-0.0059	NEUTRAL	NA	477	Too-Many
TCGA.EI.6885	2	21832	97577660	30595	0.2051	NEUTRAL	NA	495	Too-Many
TCGA.G4.6307	2	21832	102743179	31912	-0.0374	NEUTRAL	NA	534	Too-Many
TCGA.AA.3666	2	21832	103608895	32293	0.0658	NEUTRAL	NA	542	Too-Many
TCGA.AZ.4308	2	21832	106898916	33338	-0.0096	NEUTRAL	NA	551	Too-Many
TCGA.AA.3522	2	21832	108812122	33899	-0.004	NEUTRAL	NA	555	Too-Many
TCGA.5M.AAT5	2	21832	111793215	34478	0.0411	NEUTRAL	NA	574	Too-Many
TCGA.AA.3712	2	21832	114186946	35120	-0.0197	NEUTRAL	NA	598	Too-Many
TCGA.AD.6888	2	21832	114186946	35082	0.2393	NEUTRAL	NA	598	Too-Many
TCGA.CI.6624	2	21832	114186946	35055	0.0571	NEUTRAL	NA	598	Too-Many
TCGA.DM.A1DB	2	21832	114186946	35121	-0.0112	NEUTRAL	NA	598	Too-Many
TCGA.EI.6514	2	21832	114186946	35093	0.2189	NEUTRAL	NA	598	Too-Many
TCGA.G5.6572	2	21832	114186946	35074	0.3614	NEUTRAL	NA	598	Too-Many
TCGA.F5.6464	2	21832	115254528	35389	0.2114	NEUTRAL	NA	604	Too-Many
TCGA.D5.6539	2	21832	118469398	36183	-0.0186	NEUTRAL	NA	604	Too-Many
TCGA.AF.2691	2	21832	124954597	38428	0.0088	NEUTRAL	NA	628	Too-Many
TCGA.DC.6157	2	21832	125648687	38300	0.1908	NEUTRAL	NA	628	Too-Many
TCGA.A6.5667	2	21832	127442248	39098	0.2164	NEUTRAL	NA	629	Too-Many
TCGA.AA.3870	2	21832	128551369	39422	0.0253	NEUTRAL	NA	640	Too-Many
TCGA.AA.3818	2	21832	129274600	39638	-0.0063	NEUTRAL	NA	645	Too-Many
TCGA.AG.3583	2	21832	130196778	38890	-0.0169	NEUTRAL	NA	645	Too-Many
TCGA.NH.A8F7	2	21832	130549274	40019	0.26	NEUTRAL	NA	645	Too-Many
TCGA.DM.A1HA	2	21832	131842153	40340	0.0114	NEUTRAL	NA	662	Too-Many
TCGA.DM.A1D7	2	21832	133079371	40475	-0.0655	NEUTRAL	NA	671	Too-Many
TCGA.A6.2686	2	21832	133492749	40596	0.2695	NEUTRAL	NA	674	Too-Many
TCGA.A6.6782	2	21832	133645805	40598	0.0537	NEUTRAL	NA	674	Too-Many
TCGA.F5.6814	2	21832	135091459	41292	0.0819	NEUTRAL	NA	675	Too-Many
TCGA.A6.A566	2	21832	138282951	42016	0.0067	NEUTRAL	NA	688	Too-Many
TCGA.CA.5797	2	21832	138838294	42468	0.0174	NEUTRAL	NA	689	Too-Many
TCGA.DM.A1D9	2	21832	138858167	42479	-0.0008	NEUTRAL	NA	689	Too-Many
TCGA.DM.A1D6	2	21832	139038225	42558	-0.013	NEUTRAL	NA	689	Too-Many
TCGA.G4.6309	2	21832	139414417	42566	-0.0093	NEUTRAL	NA	690	Too-Many
TCGA.AF.A56L	2	21832	141838278	43322	0.0844	NEUTRAL	NA	692	Too-Many
TCGA.F4.6460	2	21832	142125732	43506	0.0682	NEUTRAL	NA	692	Too-Many
TCGA.D5.6531	2	21832	142129522	43479	0.0144	NEUTRAL	NA	692	Too-Many
TCGA.AA.3681	2	21832	145598976	44501	-0.0154	NEUTRAL	NA	696	Too-Many
TCGA.EI.6882	2	21832	148747901	45113	-0.0105	NEUTRAL	NA	698	Too-Many
TCGA.CM.6676	2	21832	150739255	45518	0.0566	NEUTRAL	NA	704	Too-Many
TCGA.CM.6675	2	21832	154626053	46760	-0.0099	NEUTRAL	NA	717	Too-Many
TCGA.DY.A1DC	2	21832	154932157	46830	-0.007	NEUTRAL	NA	718	Too-Many
TCGA.AA.3989	2	21832	155599448	47154	0.0097	NEUTRAL	NA	720	Too-Many
TCGA.AG.3893	2	21832	158819430	47438	0	NEUTRAL	NA	727	Too-Many
TCGA.EI.6513	2	21832	158928205	47914	-0.0202	NEUTRAL	NA	728	Too-Many
TCGA.AA.3697	2	21832	159164347	47944	0.0443	NEUTRAL	NA	729	Too-Many
TCGA.A6.5656	2	21832	159929430	48030	-0.007	NEUTRAL	NA	732	Too-Many
TCGA.CM.6170	2	21832	160577009	48416	0.0212	NEUTRAL	NA	735	Too-Many
TCGA.AH.6643	2	21832	164635628	49329	-0.0513	NEUTRAL	NA	752	Too-Many
TCGA.CL.4957	2	21832	170374133	51176	-0.0091	NEUTRAL	NA	775	Too-Many
TCGA.G4.6310	2	21832	184084152	55362	0.215	NEUTRAL	NA	856	Too-Many
TCGA.AG.4015	2	21832	186797021	55788	-0.0021	NEUTRAL	NA	858	Too-Many
TCGA.AA.3831	2	21832	190586016	56727	0	NEUTRAL	NA	872	Too-Many
TCGA.DM.A28A	2	21832	190667189	56688	0.0207	NEUTRAL	NA	875	Too-Many
TCGA.AA.3966	2	21832	195785763	57888	0.0947	NEUTRAL	NA	889	Too-Many
TCGA.CM.5868	2	21832	196964432	58192	0.0819	NEUTRAL	NA	891	Too-Many
TCGA.AG.3883	2	21832	198083259	58661	-0.0146	NEUTRAL	NA	898	Too-Many
TCGA.SS.A7HO	2	21832	202117509	59682	0.1508	NEUTRAL	NA	926	Too-Many
TCGA.AA.3977	2	21832	205552797	60326	-0.0036	NEUTRAL	NA	951	Too-Many
TCGA.D5.5540	2	21832	205881251	60592	-0.0011	NEUTRAL	NA	951	Too-Many
TCGA.EI.6512	2	21832	206097024	60696	-0.0196	NEUTRAL	NA	951	Too-Many
TCGA.A6.4107	2	21832	213181314	62768	0	NEUTRAL	NA	986	Too-Many
TCGA.D5.5537	2	21832	213181314	62673	0.2147	NEUTRAL	NA	986	Too-Many
TCGA.EI.6506	2	21832	213181314	62697	0.1204	NEUTRAL	NA	986	Too-Many
TCGA.G4.6628	2	21832	213181314	62657	0.3436	NEUTRAL	NA	986	Too-Many
TCGA.DY.A1DF	2	21832	213637049	62953	0.0139	NEUTRAL	NA	986	Too-Many
TCGA.A6.6648	2	21832	214717737	63260	-0.0408	NEUTRAL	NA	989	Too-Many
TCGA.G5.6641	2	21832	215000914	63203	-0.0182	NEUTRAL	NA	989	Too-Many
TCGA.G4.6322	2	21832	216372780	63796	0.0075	NEUTRAL	NA	994	Too-Many
TCGA.AD.6901	2	21832	217469832	64055	0.0264	NEUTRAL	NA	1001	Too-Many
TCGA.D5.5539	2	21832	223488777	66207	-0.0276	NEUTRAL	NA	1065	Too-Many
TCGA.AF.3911	2	21832	224068835	66502	0.0072	NEUTRAL	NA	1068	Too-Many
TCGA.F5.6813	2	21832	225897362	67091	-0.0082	NEUTRAL	NA	1076	Too-Many
TCGA.AA.3664	2	21832	226137019	67299	-0.018	NEUTRAL	NA	1076	Too-Many
TCGA.RU.A8FL	2	21832	227904938	67744	0.24	NEUTRAL	NA	1080	Too-Many
TCGA.AA.3968	2	21832	227997039	67754	0	NEUTRAL	NA	1080	Too-Many
TCGA.AA.3875	2	21832	229387416	68287	-0.0111	NEUTRAL	NA	1089	Too-Many
TCGA.F4.6805	2	21832	229857491	68235	-0.0134	NEUTRAL	NA	1089	Too-Many
TCGA.A6.2672	2	21832	232145851	68735	-0.0149	NEUTRAL	NA	1106	Too-Many
TCGA.AG.3885	2	21832	235496583	70184	0.0285	NEUTRAL	NA	1150	Too-Many
TCGA.A6.2684	2	21832	235891644	64425	0.0008	NEUTRAL	NA	1151	Too-Many
TCGA.DM.A1D4	2	21832	236556661	70618	-0.0021	NEUTRAL	NA	1152	Too-Many
TCGA.CM.4747	2	21832	237242096	70760	-0.0093	NEUTRAL	NA	1155	Too-Many
TCGA.EI.6917	2	21832	237535154	70694	0	NEUTRAL	NA	1156	Too-Many
TCGA.F5.6812	2	21832	237723693	70841	0.0145	NEUTRAL	NA	1156	Too-Many
TCGA.CM.5863	2	21832	238192669	71053	0	NEUTRAL	NA	1157	Too-Many
TCGA.AA.3662	2	21832	240662812	71980	0.0052	NEUTRAL	NA	1176	Too-Many
TCGA.AA.3848	2	21832	241223727	72261	-0.1616	NEUTRAL	NA	1182	Too-Many
TCGA.G4.6302	2	21832	242695899	72555	-0.0011	NEUTRAL	NA	1208	Too-Many
TCGA.AU.3779	2	21832	242996588	72576	0.0605	NEUTRAL	NA	1212	Too-Many
TCGA.A6.5660	2	21832	243034518	72309	0.0139	NEUTRAL	NA	1212	Too-Many
TCGA.3L.AA1B	2	21832	243048759	72555	0.1598	NEUTRAL	NA	1212	Too-Many
TCGA.4T.AA8H	2	21832	243048759	72577	-0.0049	NEUTRAL	NA	1212	Too-Many
TCGA.5M.AAT6	2	21832	243048759	72565	-0.0034	NEUTRAL	NA	1212	Too-Many
TCGA.A6.2671	2	21832	243048759	72515	0.0384	NEUTRAL	NA	1212	Too-Many
TCGA.A6.2674	2	21832	243048759	72549	0.0109	NEUTRAL	NA	1212	Too-Many
TCGA.A6.2675	2	21832	243048759	72026	0.0035	NEUTRAL	NA	1212	Too-Many
TCGA.A6.2679	2	21832	243048759	72511	-0.0421	NEUTRAL	NA	1212	Too-Many
TCGA.A6.2680	2	21832	243048759	72473	0.0014	NEUTRAL	NA	1212	Too-Many
TCGA.A6.2682	2	21832	243048759	71200	-0.0255	NEUTRAL	NA	1212	Too-Many
TCGA.A6.2683	2	21832	243048759	72503	-0.0465	NEUTRAL	NA	1212	Too-Many
TCGA.A6.2685	2	21832	243048759	72446	-0.0115	NEUTRAL	NA	1212	Too-Many
TCGA.A6.3807	2	21832	243048759	72157	0.1415	NEUTRAL	NA	1212	Too-Many
TCGA.A6.3809	2	21832	243048759	66572	0.0055	NEUTRAL	NA	1212	Too-Many
TCGA.A6.5657	2	21832	243048759	72394	-0.0072	NEUTRAL	NA	1212	Too-Many
TCGA.A6.5659	2	21832	243048759	66468	0.2196	NEUTRAL	NA	1212	Too-Many
TCGA.A6.5662	2	21832	243048759	72340	-0.0012	NEUTRAL	NA	1212	Too-Many
TCGA.A6.5664	2	21832	243048759	72417	-0.0046	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6137	2	21832	243048759	72600	-0.007	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6138	2	21832	243048759	72602	0.0113	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6140	2	21832	243048759	72608	0.0466	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6141	2	21832	243048759	72548	-0.0051	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6142	2	21832	243048759	72591	-0.0098	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6649	2	21832	243048759	72595	0.1482	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6650	2	21832	243048759	66457	-0.0061	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6651	2	21832	243048759	72271	0.0519	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6654	2	21832	243048759	72422	0.1595	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6780	2	21832	243048759	72435	-0.0109	NEUTRAL	NA	1212	Too-Many
TCGA.A6.6781	2	21832	243048759	66431	0.0053	NEUTRAL	NA	1212	Too-Many
TCGA.A6.A565	2	21832	243048759	72168	0	NEUTRAL	NA	1212	Too-Many
TCGA.A6.A567	2	21832	243048759	72085	0.0264	NEUTRAL	NA	1212	Too-Many
TCGA.A6.A56B	2	21832	243048759	72202	0.0009	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3488	2	21832	243048759	72534	0	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3489	2	21832	243048759	72372	0.0223	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3492	2	21832	243048759	72556	-0.0055	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3495	2	21832	243048759	72549	0.0349	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3502	2	21832	243048759	72535	-0.0074	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3510	2	21832	243048759	72544	-0.0035	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3511	2	21832	243048759	72447	-0.1958	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3514	2	21832	243048759	72543	-0.009	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3516	2	21832	243048759	72423	-0.0122	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3517	2	21832	243048759	72518	0.0036	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3518	2	21832	243048759	72364	-0.014	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3524	2	21832	243048759	72527	-0.0117	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3526	2	21832	243048759	72548	-0.0128	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3527	2	21832	243048759	72557	-0.0242	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3531	2	21832	243048759	72548	0.2475	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3532	2	21832	243048759	72550	0.1507	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3548	2	21832	243048759	72589	-0.0099	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3549	2	21832	243048759	72590	-0.0324	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3555	2	21832	243048759	72595	-0.0131	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3560	2	21832	243048759	72583	-0.2683	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3561	2	21832	243048759	72588	-0.0122	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3655	2	21832	243048759	72584	-0.0109	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3663	2	21832	243048759	72410	-0.0145	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3667	2	21832	243048759	72638	-0.0209	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3673	2	21832	243048759	72636	0.099	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3675	2	21832	243048759	72626	-0.0131	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3678	2	21832	243048759	72631	-0.0097	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3684	2	21832	243048759	72631	0.1459	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3688	2	21832	243048759	72634	0.0015	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3692	2	21832	243048759	72621	0.0565	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3695	2	21832	243048759	72637	-0.0003	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3710	2	21832	243048759	72535	0.0432	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3713	2	21832	243048759	72565	-0.0084	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3715	2	21832	243048759	72630	-0.0255	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3812	2	21832	243048759	72635	0.2509	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3814	2	21832	243048759	72631	0.3206	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3821	2	21832	243048759	72488	0.0052	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3833	2	21832	243048759	72638	-0.011	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3837	2	21832	243048759	72634	-0.0307	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3842	2	21832	243048759	72537	-0.3154	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3845	2	21832	243048759	72481	-0.0075	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3846	2	21832	243048759	72516	-0.0141	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3851	2	21832	243048759	72497	0.2932	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3852	2	21832	243048759	72635	-0.0133	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3854	2	21832	243048759	72638	-0.0121	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3855	2	21832	243048759	72480	-0.0036	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3858	2	21832	243048759	72621	0	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3860	2	21832	243048759	72609	0	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3869	2	21832	243048759	72500	-0.0136	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3877	2	21832	243048759	72551	-0.0081	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3947	2	21832	243048759	72463	-0.016	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3949	2	21832	243048759	72522	-0.0078	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3950	2	21832	243048759	72542	-0.0017	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3955	2	21832	243048759	72557	-0.011	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3956	2	21832	243048759	72493	-0.0181	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3971	2	21832	243048759	72540	0.3252	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3973	2	21832	243048759	72532	-0.0081	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3984	2	21832	243048759	72488	-0.0014	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3986	2	21832	243048759	72533	0.0446	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3994	2	21832	243048759	72491	-0.0213	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A01P	2	21832	243048759	72503	-0.009	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A01R	2	21832	243048759	72551	-0.0076	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A01T	2	21832	243048759	72530	0	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A01V	2	21832	243048759	72536	-0.0104	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A01X	2	21832	243048759	72431	0.2205	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A022	2	21832	243048759	72455	-0.0116	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A02O	2	21832	243048759	72556	-0.0127	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A02Y	2	21832	243048759	72514	-0.0067	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A03F	2	21832	243048759	72529	-0.0081	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A03J	2	21832	243048759	71034	-0.0007	NEUTRAL	NA	1212	Too-Many
TCGA.AD.5900	2	21832	243048759	72450	-0.0056	NEUTRAL	NA	1212	Too-Many
TCGA.AD.6548	2	21832	243048759	72355	0.0871	NEUTRAL	NA	1212	Too-Many
TCGA.AD.6889	2	21832	243048759	72514	-0.0056	NEUTRAL	NA	1212	Too-Many
TCGA.AD.6890	2	21832	243048759	72516	0.005	NEUTRAL	NA	1212	Too-Many
TCGA.AD.6895	2	21832	243048759	72499	-0.0061	NEUTRAL	NA	1212	Too-Many
TCGA.AD.6963	2	21832	243048759	72516	0.1687	NEUTRAL	NA	1212	Too-Many
TCGA.AD.6964	2	21832	243048759	72519	-0.0035	NEUTRAL	NA	1212	Too-Many
TCGA.AD.A5EJ	2	21832	243048759	72213	0.0071	NEUTRAL	NA	1212	Too-Many
TCGA.AF.2687	2	21832	243048759	72375	0.1266	NEUTRAL	NA	1212	Too-Many
TCGA.AF.2690	2	21832	243048759	72602	0.1859	NEUTRAL	NA	1212	Too-Many
TCGA.AF.2692	2	21832	243048759	72579	0.0355	NEUTRAL	NA	1212	Too-Many
TCGA.AF.3913	2	21832	243048759	72317	0.1364	NEUTRAL	NA	1212	Too-Many
TCGA.AF.4110	2	21832	243048759	72588	0.0172	NEUTRAL	NA	1212	Too-Many
TCGA.AF.6655	2	21832	243048759	72435	-0.027	NEUTRAL	NA	1212	Too-Many
TCGA.AF.6672	2	21832	243048759	72478	-0.0167	NEUTRAL	NA	1212	Too-Many
TCGA.AF.A56N	2	21832	243048759	72447	0.0221	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3575	2	21832	243048759	72586	-0.0079	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3580	2	21832	243048759	72593	-0.0109	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3581	2	21832	243048759	72586	-0.0077	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3594	2	21832	243048759	72603	-0.0087	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3598	2	21832	243048759	72308	-0.0331	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3599	2	21832	243048759	72466	-0.0496	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3602	2	21832	243048759	72154	-0.0365	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3612	2	21832	243048759	72120	-0.0874	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3725	2	21832	243048759	72502	-0.0256	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3726	2	21832	243048759	72578	-0.0198	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3728	2	21832	243048759	72636	0	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3731	2	21832	243048759	72614	0.018	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3742	2	21832	243048759	72118	0.0037	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3878	2	21832	243048759	72633	-0.0229	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3881	2	21832	243048759	72618	-0.2976	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3887	2	21832	243048759	72288	-0.0158	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3894	2	21832	243048759	72361	-0.0137	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3901	2	21832	243048759	72384	0.0177	NEUTRAL	NA	1212	Too-Many
TCGA.AG.3902	2	21832	243048759	72368	-0.0211	NEUTRAL	NA	1212	Too-Many
TCGA.AG.4022	2	21832	243048759	72613	0.1265	NEUTRAL	NA	1212	Too-Many
TCGA.AG.A01Y	2	21832	243048759	72413	0	NEUTRAL	NA	1212	Too-Many
TCGA.AG.A020	2	21832	243048759	72467	0.0204	NEUTRAL	NA	1212	Too-Many
TCGA.AG.A02N	2	21832	243048759	72519	-0.0147	NEUTRAL	NA	1212	Too-Many
TCGA.AH.6547	2	21832	243048759	72514	-0.0075	NEUTRAL	NA	1212	Too-Many
TCGA.AH.6644	2	21832	243048759	72416	-0.0155	NEUTRAL	NA	1212	Too-Many
TCGA.AH.6903	2	21832	243048759	72449	-0.0065	NEUTRAL	NA	1212	Too-Many
TCGA.AM.5821	2	21832	243048759	72344	-0.0112	NEUTRAL	NA	1212	Too-Many
TCGA.AU.6004	2	21832	243048759	72017	-0.0043	NEUTRAL	NA	1212	Too-Many
TCGA.AY.4070	2	21832	243048759	72260	0.113	NEUTRAL	NA	1212	Too-Many
TCGA.AY.4071	2	21832	243048759	72260	0	NEUTRAL	NA	1212	Too-Many
TCGA.AY.6196	2	21832	243048759	71724	0.1358	NEUTRAL	NA	1212	Too-Many
TCGA.AY.6197	2	21832	243048759	70819	-0.0108	NEUTRAL	NA	1212	Too-Many
TCGA.AY.6386	2	21832	243048759	72549	-0.0079	NEUTRAL	NA	1212	Too-Many
TCGA.AY.A69D	2	21832	243048759	72513	0.0123	NEUTRAL	NA	1212	Too-Many
TCGA.AY.A8YK	2	21832	243048759	72571	0	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.4315	2	21832	243048759	72532	-0.0025	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.4323	2	21832	243048759	72318	0.0218	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.4615	2	21832	243048759	72536	-0.0081	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.4681	2	21832	243048759	72533	-0.0027	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.4682	2	21832	243048759	72556	-0.0196	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.5403	2	21832	243048759	72473	-0.0002	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.5407	2	21832	243048759	72594	-0.0037	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.6598	2	21832	243048759	72600	-0.0045	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.6600	2	21832	243048759	72539	0.0226	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.6603	2	21832	243048759	72448	-0.0248	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.6605	2	21832	243048759	72362	0	NEUTRAL	NA	1212	Too-Many
TCGA.AZ.6607	2	21832	243048759	72404	0.115	NEUTRAL	NA	1212	Too-Many
TCGA.CA.5255	2	21832	243048759	72378	-1.00E-04	NEUTRAL	NA	1212	Too-Many
TCGA.CA.5256	2	21832	243048759	71997	0.0173	NEUTRAL	NA	1212	Too-Many
TCGA.CA.5796	2	21832	243048759	72443	-0.0068	NEUTRAL	NA	1212	Too-Many
TCGA.CA.6716	2	21832	243048759	72460	0.2058	NEUTRAL	NA	1212	Too-Many
TCGA.CA.6717	2	21832	243048759	72294	-0.0064	NEUTRAL	NA	1212	Too-Many
TCGA.CA.6718	2	21832	243048759	72361	0.1976	NEUTRAL	NA	1212	Too-Many
TCGA.CA.6719	2	21832	243048759	72359	0.0041	NEUTRAL	NA	1212	Too-Many
TCGA.CI.6619	2	21832	243048759	72478	-0.0068	NEUTRAL	NA	1212	Too-Many
TCGA.CI.6620	2	21832	243048759	72449	-0.0012	NEUTRAL	NA	1212	Too-Many
TCGA.CI.6621	2	21832	243048759	72465	0.0908	NEUTRAL	NA	1212	Too-Many
TCGA.CI.6622	2	21832	243048759	72462	-0.0082	NEUTRAL	NA	1212	Too-Many
TCGA.CI.6623	2	21832	243048759	72487	-0.1153	NEUTRAL	NA	1212	Too-Many
TCGA.CK.4947	2	21832	243048759	72481	-0.0134	NEUTRAL	NA	1212	Too-Many
TCGA.CK.4950	2	21832	243048759	71935	0.2848	NEUTRAL	NA	1212	Too-Many
TCGA.CK.4951	2	21832	243048759	72219	-0.0146	NEUTRAL	NA	1212	Too-Many
TCGA.CK.5912	2	21832	243048759	72344	-0.0298	NEUTRAL	NA	1212	Too-Many
TCGA.CK.5915	2	21832	243048759	72442	0	NEUTRAL	NA	1212	Too-Many
TCGA.CK.5916	2	21832	243048759	72431	-0.0096	NEUTRAL	NA	1212	Too-Many
TCGA.CK.6747	2	21832	243048759	72315	-0.01	NEUTRAL	NA	1212	Too-Many
TCGA.CK.6748	2	21832	243048759	72467	0.001	NEUTRAL	NA	1212	Too-Many
TCGA.CK.6751	2	21832	243048759	72145	-0.0057	NEUTRAL	NA	1212	Too-Many
TCGA.CL.5918	2	21832	243048759	72427	0.2258	NEUTRAL	NA	1212	Too-Many
TCGA.CM.4743	2	21832	243048759	72572	-0.0023	NEUTRAL	NA	1212	Too-Many
TCGA.CM.4748	2	21832	243048759	72543	-0.0095	NEUTRAL	NA	1212	Too-Many
TCGA.CM.4752	2	21832	243048759	72534	0	NEUTRAL	NA	1212	Too-Many
TCGA.CM.5341	2	21832	243048759	72550	0.0089	NEUTRAL	NA	1212	Too-Many
TCGA.CM.5344	2	21832	243048759	72571	0.034	NEUTRAL	NA	1212	Too-Many
TCGA.CM.5860	2	21832	243048759	72453	-0.0379	NEUTRAL	NA	1212	Too-Many
TCGA.CM.5861	2	21832	243048759	72502	-0.0137	NEUTRAL	NA	1212	Too-Many
TCGA.CM.5862	2	21832	243048759	72434	0.2891	NEUTRAL	NA	1212	Too-Many
TCGA.CM.5864	2	21832	243048759	72434	-0.013	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6161	2	21832	243048759	72438	0.3098	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6162	2	21832	243048759	72277	-0.0026	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6163	2	21832	243048759	72284	0.0039	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6164	2	21832	243048759	72479	0.0143	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6166	2	21832	243048759	72595	0.3766	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6167	2	21832	243048759	72553	0.083	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6168	2	21832	243048759	72574	-0.0064	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6169	2	21832	243048759	72160	0.0601	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6171	2	21832	243048759	72590	-0.009	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6172	2	21832	243048759	72591	0	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6674	2	21832	243048759	72435	-0.0089	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6677	2	21832	243048759	72306	0.0059	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6678	2	21832	243048759	72413	0	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6679	2	21832	243048759	72338	0.00385	NEUTRAL	NA	1212	Too-Many
TCGA.CM.6680	2	21832	243048759	72464	0	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6529	2	21832	243048759	72587	0.009	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6530	2	21832	243048759	72587	-0.0049	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6534	2	21832	243048759	72412	-0.0195	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6535	2	21832	243048759	72595	-0.0044	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6536	2	21832	243048759	72594	0	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6538	2	21832	243048759	72564	0.33	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6540	2	21832	243048759	72444	-0.0193	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6541	2	21832	243048759	72595	-0.0098	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6898	2	21832	243048759	72463	0.0663	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6920	2	21832	243048759	72428	-0.0037	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6922	2	21832	243048759	72418	-0.0093	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6923	2	21832	243048759	72409	-0.0138	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6924	2	21832	243048759	72450	0.0782	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6927	2	21832	243048759	72468	-0.009	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6928	2	21832	243048759	72457	-0.013	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6930	2	21832	243048759	72439	-0.0061	NEUTRAL	NA	1212	Too-Many
TCGA.D5.6931	2	21832	243048759	72420	-0.0022	NEUTRAL	NA	1212	Too-Many
TCGA.D5.7000	2	21832	243048759	72274	-0.0093	NEUTRAL	NA	1212	Too-Many
TCGA.DC.5869	2	21832	243048759	72424	0.2317	NEUTRAL	NA	1212	Too-Many
TCGA.DC.6155	2	21832	243048759	72252	0.0045	NEUTRAL	NA	1212	Too-Many
TCGA.DC.6158	2	21832	243048759	72381	0.0298	NEUTRAL	NA	1212	Too-Many
TCGA.DC.6681	2	21832	243048759	72460	-0.0196	NEUTRAL	NA	1212	Too-Many
TCGA.DC.6682	2	21832	243048759	72501	0.0695	NEUTRAL	NA	1212	Too-Many
TCGA.DC.6683	2	21832	243048759	72427	0.0095	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A0XD	2	21832	243048759	72309	-0.0081	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A0XF	2	21832	243048759	72574	-0.0097	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A1D0	2	21832	243048759	72181	0	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A1D8	2	21832	243048759	72480	-0.0025	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A280	2	21832	243048759	72441	0.0828	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A285	2	21832	243048759	72403	0	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A28C	2	21832	243048759	72484	-0.0063	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A28E	2	21832	243048759	72405	-0.0148	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A28G	2	21832	243048759	72493	-0.0165	NEUTRAL	NA	1212	Too-Many
TCGA.DM.A28K	2	21832	243048759	72408	-0.0111	NEUTRAL	NA	1212	Too-Many
TCGA.DT.5265	2	21832	243048759	72500	0.0217	NEUTRAL	NA	1212	Too-Many
TCGA.DY.A0XA	2	21832	243048759	72489	0.0016	NEUTRAL	NA	1212	Too-Many
TCGA.DY.A1DD	2	21832	243048759	72572	-0.0236	NEUTRAL	NA	1212	Too-Many
TCGA.EF.5830	2	21832	243048759	72454	0.003	NEUTRAL	NA	1212	Too-Many
TCGA.EI.6507	2	21832	243048759	72596	-0.0086	NEUTRAL	NA	1212	Too-Many
TCGA.EI.6509	2	21832	243048759	72610	0	NEUTRAL	NA	1212	Too-Many
TCGA.EI.6510	2	21832	243048759	72453	0	NEUTRAL	NA	1212	Too-Many
TCGA.EI.6884	2	21832	243048759	72390	-0.0091	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6463	2	21832	243048759	72557	-0.0153	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6569	2	21832	243048759	72603	-0.007	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6570	2	21832	243048759	72594	-0.0078	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6703	2	21832	243048759	72471	0.0116	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6808	2	21832	243048759	72459	0.0208	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6809	2	21832	243048759	72460	0.0042	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6854	2	21832	243048759	72436	0	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6855	2	21832	243048759	72412	-0.0071	NEUTRAL	NA	1212	Too-Many
TCGA.F4.6856	2	21832	243048759	72469	-0.0105	NEUTRAL	NA	1212	Too-Many
TCGA.F5.6465	2	21832	243048759	72618	0.3245	NEUTRAL	NA	1212	Too-Many
TCGA.F5.6571	2	21832	243048759	72470	-0.2115	NEUTRAL	NA	1212	Too-Many
TCGA.F5.6702	2	21832	243048759	72302	0	NEUTRAL	NA	1212	Too-Many
TCGA.F5.6810	2	21832	243048759	72494	0	NEUTRAL	NA	1212	Too-Many
TCGA.F5.6861	2	21832	243048759	72432	-0.0079	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6293	2	21832	243048759	72554	-0.0103	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6297	2	21832	243048759	72576	-0.0138	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6298	2	21832	243048759	72579	0.0014	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6304	2	21832	243048759	72453	-0.0024	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6306	2	21832	243048759	72570	-0.0111	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6311	2	21832	243048759	72587	0.1418	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6314	2	21832	243048759	72596	0	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6315	2	21832	243048759	72600	0.0167	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6320	2	21832	243048759	72592	-0.0075	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6321	2	21832	243048759	72587	-0.0019	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6323	2	21832	243048759	72586	-0.0106	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6586	2	21832	243048759	72600	-0.0095	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6588	2	21832	243048759	72586	-0.0063	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6625	2	21832	243048759	72580	0	NEUTRAL	NA	1212	Too-Many
TCGA.G5.6233	2	21832	243048759	72618	0.2108	NEUTRAL	NA	1212	Too-Many
TCGA.G5.6235	2	21832	243048759	72619	0.0606	NEUTRAL	NA	1212	Too-Many
TCGA.NH.A50T	2	21832	243048759	72182	0.1635	NEUTRAL	NA	1212	Too-Many
TCGA.NH.A5IV	2	21832	243048759	72453	0	NEUTRAL	NA	1212	Too-Many
TCGA.NH.A6GA	2	21832	243048759	72495	0.014	NEUTRAL	NA	1212	Too-Many
TCGA.NH.A6GB	2	21832	243048759	72549	0.0137	NEUTRAL	NA	1212	Too-Many
TCGA.NH.A8F8	2	21832	243048759	72583	0.0034	NEUTRAL	NA	1212	Too-Many
TCGA.QG.A5YV	2	21832	243048759	72089	0.0215	NEUTRAL	NA	1212	Too-Many
TCGA.QG.A5YW	2	21832	243048759	72202	0.3063	NEUTRAL	NA	1212	Too-Many
TCGA.QG.A5Z1	2	21832	243048759	71954	0.0012	NEUTRAL	NA	1212	Too-Many
TCGA.QG.A5Z2	2	21832	243048759	72072	0	NEUTRAL	NA	1212	Too-Many
TCGA.WS.AB45	2	21832	243048759	72564	-0.0042	NEUTRAL	NA	1212	Too-Many
TCGA.AG.A01W.01A	2	31521	665472	24	0.2471	NEUTRAL	NA	4	"ACP1,FAM110C,FAM150B,SH3YL1"
TCGA.AG.A036.01A	2	31521	29290304	1709	0.0073	NEUTRAL	NA	161	Too-Many
TCGA.F5.6811.01A	2	31541	50171916	3057	-0.0031	NEUTRAL	NA	260	Too-Many
TCGA.DC.6160.01A	2	31541	88966520	5087	0.0533	NEUTRAL	NA	463	Too-Many
TCGA.CK.4952.01A	2	31541	130549034	7101	-0.0886	NEUTRAL	NA	645	Too-Many
TCGA.AA.A02K.01A	2	41521	8926339	212	0.223	NEUTRAL	NA	23	"ACP1,ADI1,ALLC,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,ID2,KIDINS220,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AG.4009.01A	2	41541	234123	8	-0.0539	NEUTRAL	NA	2	"FAM110C,SH3YL1"
TCGA.AG.A00C.01A	2	41541	1892993	77	0.2246	NEUTRAL	NA	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AA.A01K.01A	2	41541	1946790	76	-0.3852	NEUTRAL	NA	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AG.3906.01A	2	41541	3261023	93	-0.2445	NEUTRAL	NA	10	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO,TSSC1"
TCGA.AA.A017.01A	2	41541	3469321	95	-0.0942	NEUTRAL	NA	11	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.A01C.01A	2	41541	3604332	109	-0.0065	NEUTRAL	NA	13	"ACP1,ADI1,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.A01D.01A	2	41541	3687808	106	-0.497	NEUTRAL	NA	15	"ACP1,ADI1,COLEC11,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AG.A01N.01A	2	41541	3687808	123	-0.3132	NEUTRAL	NA	15	"ACP1,ADI1,COLEC11,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.A02F.01A	2	41541	6989954	116	-0.3934	NEUTRAL	NA	19	"ACP1,ADI1,ALLC,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.3930.01A	2	41541	9347204	254	-0.0483	NEUTRAL	NA	25	"ACP1,ADI1,ALLC,ASAP2,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,ID2,KIDINS220,MBOAT2,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AG.A014.01A	2	41541	9531144	220	-0.0523	NEUTRAL	NA	25	"ACP1,ADI1,ALLC,ASAP2,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,ID2,KIDINS220,MBOAT2,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AG.3891.01A	2	41541	9548188	229	-0.1606	NEUTRAL	NA	26	"ACP1,ADI1,ALLC,ASAP2,CMPK2,COLEC11,DCDC2C,FAM110C,FAM150B,ID2,ITGB1BP1,KIDINS220,MBOAT2,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.A6.3808.01A	2	41541	10205960	378	-0.3088	NEUTRAL	NA	34	"ACP1,ADAM17,ADI1,ALLC,ASAP2,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,FAM110C,FAM150B,GRHL1,IAH1,ID2,ITGB1BP1,KIDINS220,KLF11,MBOAT2,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AZ.4684.01A	2	41541	11315017	463	-0.1971	NEUTRAL	NA	44	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,FAM110C,FAM150B,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,MBOAT2,MYT1L,NOL10,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AA.3509.01A	2	41541	12864703	565	-0.199	NEUTRAL	NA	50	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AG.A025.01A	2	41541	12864703	470	-0.3736	NEUTRAL	NA	50	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AG.A023.01A	2	41541	14779242	459	-0.3752	NEUTRAL	NA	52	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AA.3967.01A	2	41541	20097613	630	0.0425	NEUTRAL	NA	67	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PQLC3,PXDN,RAD51AP2,RDH14,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,TTC32,VSNL1,YWHAQ"
TCGA.AA.A00O.01A	2	41541	25046051	835	-0.0847	NEUTRAL	NA	94	"ACP1,ADAM17,ADCY3,ADI1,ALLC,APOB,ASAP2,ATAD2B,ATP6V1C2,C2orf44,C2orf48,C2orf50,CENPO,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM228A,FAM228B,FAM49A,FAM84A,FKBP1B,GDF7,GEN1,GREB1,GRHL1,HPCAL1,HS1BP3,IAH1,ID2,ITGB1BP1,ITSN2,KCNF1,KCNS3,KIDINS220,KLF11,KLHL29,LAPTM4A,LDAH,LOC653602,LPIN1,MATN3,MBOAT2,MFSD2B,MSGN1,MYCN,MYT1L,NBAS,NCOA1,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PFN4,PQLC3,PTRHD1,PUM2,PXDN,RAD51AP2,RDH14,RHOB,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SDC1,SF3B6,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TDRD15,TMEM18,TP53I3,TPO,TRAPPC12,TRIB2,TSSC1,TTC32,UBXN2A,VSNL1,WDR35,YWHAQ"
TCGA.A6.3810.01A	2	41541	25387468	1078	0.1533	NEUTRAL	NA	97	"ACP1,ADAM17,ADCY3,ADI1,ALLC,APOB,ASAP2,ATAD2B,ATP6V1C2,C2orf44,C2orf48,C2orf50,CENPO,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,DNAJC27,E2F6,EFR3B,FAM110C,FAM150B,FAM228A,FAM228B,FAM49A,FAM84A,FKBP1B,GDF7,GEN1,GREB1,GRHL1,HPCAL1,HS1BP3,IAH1,ID2,ITGB1BP1,ITSN2,KCNF1,KCNS3,KIDINS220,KLF11,KLHL29,LAPTM4A,LDAH,LOC653602,LPIN1,MATN3,MBOAT2,MFSD2B,MSGN1,MYCN,MYT1L,NBAS,NCOA1,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PFN4,POMC,PQLC3,PTRHD1,PUM2,PXDN,RAD51AP2,RDH14,RHOB,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SDC1,SF3B6,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TDRD15,TMEM18,TP53I3,TPO,TRAPPC12,TRIB2,TSSC1,TTC32,UBXN2A,VSNL1,WDR35,YWHAQ"
TCGA.AG.A00Y.01A	2	41541	26512716	982	0.1704	NEUTRAL	NA	105	Too-Many
TCGA.AG.A02X.01A	2	41541	27169724	1080	-0.3351	NEUTRAL	NA	115	Too-Many
TCGA.AF.3914.01A	2	41541	27249091	1120	0.1358	NEUTRAL	NA	116	Too-Many
TCGA.AA.3861.01A	2	41541	27324513	1318	-0.098	NEUTRAL	NA	122	Too-Many
TCGA.AA.3862.01A	2	41541	27324513	1336	0.015	NEUTRAL	NA	122	Too-Many
TCGA.AA.A029.01A	2	41541	27430084	1128	-0.2253	NEUTRAL	NA	127	Too-Many
TCGA.AG.A008.01A	2	41541	36787871	1910	0.1559	NEUTRAL	NA	185	Too-Many
TCGA.AA.A024.01A	2	41541	47273403	2553	0.0172	NEUTRAL	NA	245	Too-Many
TCGA.AG.A016.01A	2	41541	48030539	2528	-0.088	NEUTRAL	NA	251	Too-Many
TCGA.DM.A28M.01A	2	41541	56602904	3384	-0.1209	NEUTRAL	NA	281	Too-Many
TCGA.CM.6165.01A	2	41541	61235854	3479	0.0141	NEUTRAL	NA	287	Too-Many
TCGA.AA.A02W.01A	2	41541	85824519	4067	0.0503	NEUTRAL	NA	433	Too-Many
TCGA.AG.A032.01A	2	41541	85828963	4073	0.1539	NEUTRAL	NA	434	Too-Many
TCGA.AG.A015.01A	2	41541	89049456	4330	-0.1708	NEUTRAL	NA	464	Too-Many
TCGA.AG.A011.01A	2	41541	97783753	4610	0.046	NEUTRAL	NA	497	Too-Many
TCGA.AH.6549.01A	2	41541	99988056	5662	0.0976	NEUTRAL	NA	518	Too-Many
TCGA.AA.A02E.01A	2	41541	109393569	5209	0.0158	NEUTRAL	NA	561	Too-Many
TCGA.AA.3939.01A	2	41541	128384498	6898	-0.1818	NEUTRAL	NA	636	Too-Many
TCGA.AA.A02J.01A	2	41541	128480123	5787	-0.0628	NEUTRAL	NA	640	Too-Many
TCGA.AG.A01J.01A	2	41541	138208378	6310	-0.0879	NEUTRAL	NA	688	Too-Many
TCGA.AG.A02G.01A	2	41541	155306871	6894	0.011	NEUTRAL	NA	719	Too-Many
TCGA.CK.4948.01B	2	41541	163208785	8448	-0.0501	NEUTRAL	NA	750	Too-Many
TCGA.DM.A282.01A	2	41541	163212868	8426	-0.007	NEUTRAL	NA	750	Too-Many
TCGA.AA.A02H.01A	2	41541	179358529	8163	0.0458	NEUTRAL	NA	839	Too-Many
TCGA.AG.A00H.01A	2	41541	179360175	8267	-0.1275	NEUTRAL	NA	839	Too-Many
TCGA.AA.A01I.01A	2	41541	179408876	8261	0.1694	NEUTRAL	NA	840	Too-Many
TCGA.AA.3815.01A	2	41541	179475713	9433	-0.0317	NEUTRAL	NA	840	Too-Many
TCGA.AG.A01L.01A	2	41541	202141501	9632	0.1433	NEUTRAL	NA	926	Too-Many
TCGA.AA.A004.01A	2	41541	242813848	11956	-0.1028	NEUTRAL	NA	1212	Too-Many
TCGA.AA.A02R.01A	2	41541	242813848	12056	-0.0873	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3980.01A	2	41541	242842428	14205	0.0835	NEUTRAL	NA	1212	Too-Many
TCGA.AY.A54L.01A	2	41541	242842428	14290	-0.0806	NEUTRAL	NA	1212	Too-Many
TCGA.CM.4744.01A	2	41541	242842428	14306	-0.05	NEUTRAL	NA	1212	Too-Many
TCGA.CM.4750.01A	2	41541	242842428	14306	0.1782	NEUTRAL	NA	1212	Too-Many
TCGA.G4.6303	2	101513	32643436	11686	0.2848	NEUTRAL	NA	178	Too-Many
TCGA.CK.6746	2	224191	7586435	3112	-0.0339	NEUTRAL	NA	20	"ACP1,ADI1,ALLC,CMPK2,COLEC11,DCDC2C,FAM150B,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.A01Q.01A	2	249683	669536	6	-0.4324	NEUTRAL	NA	4	"ACP1,FAM150B,SH3YL1,TMEM18"
TCGA.AA.A00F.01A	2	249683	1926041	29	0.1734	NEUTRAL	NA	8	"ACP1,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AA.A00Q.01A	2	249683	3197718	34	-0.0413	NEUTRAL	NA	9	"ACP1,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO,TSSC1"
TCGA.AA.A00L.01A	2	249683	9437377	113	-0.1887	NEUTRAL	NA	24	"ACP1,ADI1,ALLC,ASAP2,CMPK2,COLEC11,DCDC2C,FAM150B,ID2,KIDINS220,MBOAT2,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RSAD2,SH3YL1,SNTG2,SOX11,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.A01F.01A	2	249683	10566799	218	0.1433	NEUTRAL	NA	36	"ACP1,ADAM17,ADI1,ALLC,ASAP2,C2orf48,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,FAM150B,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KIDINS220,KLF11,MBOAT2,MYT1L,PXDN,RNASEH1,RNF144A,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AG.3611.01A	2	249683	10717715	232	-0.0769	NEUTRAL	NA	38	"ACP1,ADAM17,ADI1,ALLC,ASAP2,C2orf48,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,FAM150B,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KIDINS220,KLF11,MBOAT2,MYT1L,NOL10,ODC1,PXDN,RNASEH1,RNF144A,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AA.A00D.01A	2	249683	14779242	322	-0.2649	NEUTRAL	NA	51	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM150B,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AA.A00A.01A	2	249683	55544653	2434	-0.4085	NEUTRAL	NA	275	Too-Many
TCGA.AA.A00K.01A	2	249683	179368460	6676	-0.3706	NEUTRAL	NA	838	Too-Many
TCGA.AA.A00J.01A	2	249683	242800876	9750	0.0109	NEUTRAL	NA	1210	Too-Many
TCGA.AG.3882	2	343587	114186946	35058	0.0733	NEUTRAL	NA	594	Too-Many
TCGA.AG.A01W.01A	2	667221	11345185	435	-0.0052	NEUTRAL	NA	41	"ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,MBOAT2,MYT1L,NOL10,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AA.A01Q.01A	2	672738	3623139	64	-0.0765	NEUTRAL	NA	10	"ADI1,MYT1L,PXDN,RNASEH1,RPS7,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AA.A010.01A	2	675483	3523097	115	0.2903	NEUTRAL	NA	8	"ADI1,MYT1L,PXDN,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.CK.5914.01A	2	676528	1683928	54	-0.2883	NEUTRAL	NA	4	"PXDN,SNTG2,TMEM18,TPO"
TCGA.AG.3909.01A	2	677220	1637936	31	-0.0488	NEUTRAL	NA	4	"PXDN,SNTG2,TMEM18,TPO"
TCGA.AG.4009.01A	2	677220	3604332	98	-0.0865	NEUTRAL	NA	9	"ADI1,MYT1L,PXDN,RNASEH1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AZ.6601	2	940776	1580503	191	-0.3493	NEUTRAL	NA	2	"SNTG2,TPO"
TCGA.AA.3844	2	969865	2285828	386	0.0594	NEUTRAL	NA	4	"MYT1L,PXDN,SNTG2,TPO"
TCGA.AA.A00Z.01A	2	1459799	241818084	220	-0.216	NEUTRAL	NA	1186	Too-Many
TCGA.AG.3605.01A	2	1459799	242082210	239	-0.1664	NEUTRAL	NA	1190	Too-Many
TCGA.AA.3544	2	1488208	14406218	5308	0.0219	NEUTRAL	NA	44	"ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,MYT1L,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SOX11,TAF1B,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AZ.6601	2	1619219	243048759	72070	-0.0059	NEUTRAL	NA	1205	Too-Many
TCGA.AG.3909.01A	2	1665802	1683928	7	-0.0513	NEUTRAL	NA	1	PXDN
TCGA.DM.A28H	2	1689313	1831561	48	-0.0466	NEUTRAL	NA	2	"MYT1L,PXDN"
TCGA.G4.6299	2	1803885	121349813	36651	0.3049	NEUTRAL	NA	614	Too-Many
TCGA.CK.5914.01A	2	1895762	3261023	16	0.2515	NEUTRAL	NA	2	"MYT1L,TSSC1"
TCGA.AG.A00C.01A	2	1906830	3504356	28	-0.1225	NEUTRAL	NA	4	"ADI1,MYT1L,TRAPPC12,TSSC1"
TCGA.AG.3909.01A	2	1913971	3463969	21	0.0943	NEUTRAL	NA	3	"MYT1L,TRAPPC12,TSSC1"
TCGA.AA.3941	2	2307603	2374378	26	-0.3513	NEUTRAL	NA	1	MYT1L
TCGA.AZ.6608	2	2315020	65367993	22695	-0.0112	NEUTRAL	NA	303	Too-Many
TCGA.AA.3941	2	2381296	2604576	111	0.2153	NEUTRAL	NA	0	None
TCGA.AA.3850	2	2381296	4150460	793	0.30835	NEUTRAL	NA	8	"ADI1,ALLC,COLEC11,DCDC2C,RNASEH1,RPS7,TRAPPC12,TSSC1"
TCGA.AA.3844	2	2381612	4608926	975	0.0046	NEUTRAL	NA	8	"ADI1,ALLC,COLEC11,DCDC2C,RNASEH1,RPS7,TRAPPC12,TSSC1"
TCGA.AA.3819	2	2802618	40420128	13872	0.0213	NEUTRAL	NA	203	Too-Many
TCGA.DM.A1HB	2	2810391	3694931	325	-0.013	NEUTRAL	NA	6	"ADI1,COLEC11,RNASEH1,RPS7,TRAPPC12,TSSC1"
TCGA.AA.3976	2	3109258	14702348	4797	-0.0515	NEUTRAL	NA	41	"ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,NOL10,NTSR2,ODC1,PDIA6,PQLC3,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SOX11,TAF1B,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AA.A01K.01A	2	3197718	11931775	361	-0.488	NEUTRAL	NA	40	"ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,NOL10,NTSR2,ODC1,PDIA6,PQLC3,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SOX11,TAF1B,TRAPPC12,TSSC1,YWHAQ"
TCGA.AA.A00F.01A	2	3200614	3504356	19	0.1233	NEUTRAL	NA	3	"ADI1,TRAPPC12,TSSC1"
TCGA.AA.A00Q.01A	2	3200614	29222010	1248	-0.3336	NEUTRAL	NA	151	Too-Many
TCGA.AM.5820	2	3339349	3414028	22	-0.2129	NEUTRAL	NA	2	"TRAPPC12,TSSC1"
TCGA.AG.3906.01A	2	3341746	3623139	24	-0.0138	NEUTRAL	NA	5	"ADI1,RNASEH1,RPS7,TRAPPC12,TSSC1"
TCGA.AM.5820	2	3415543	120961020	35844	0.0232	NEUTRAL	NA	609	Too-Many
TCGA.AA.A017.01A	2	3502683	10933175	256	-0.2075	NEUTRAL	NA	30	"ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KIDINS220,KLF11,MBOAT2,NOL10,ODC1,PDIA6,RNASEH1,RNF144A,RPS7,RRM2,RSAD2,SOX11,TAF1B,YWHAQ"
TCGA.AA.A010.01A	2	3593327	3749915	36	-0.4288	NEUTRAL	NA	4	"ALLC,COLEC11,RNASEH1,RPS7"
TCGA.AA.A01C.01A	2	3625236	15768508	425	-0.086	NEUTRAL	NA	41	"ADAM17,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SOX11,TAF1B,TRIB2,YWHAQ"
TCGA.AG.3906.01A	2	3660835	10073899	167	-0.0033	NEUTRAL	NA	17	"ADAM17,ALLC,ASAP2,CMPK2,COLEC11,CPSF3,DCDC2C,IAH1,ID2,ITGB1BP1,KIDINS220,MBOAT2,RNF144A,RSAD2,SOX11,TAF1B,YWHAQ"
TCGA.AG.4009.01A	2	3685061	3730485	10	-0.1319	NEUTRAL	NA	2	"ALLC,COLEC11"
TCGA.AG.A00C.01A	2	3691004	9543323	99	-0.0777	NEUTRAL	NA	11	"ALLC,ASAP2,CMPK2,COLEC11,DCDC2C,ID2,KIDINS220,MBOAT2,RNF144A,RSAD2,SOX11"
TCGA.AA.A00F.01A	2	3691004	9552386	63	0.0449	NEUTRAL	NA	12	"ALLC,ASAP2,CMPK2,COLEC11,DCDC2C,ID2,ITGB1BP1,KIDINS220,MBOAT2,RNF144A,RSAD2,SOX11"
TCGA.AA.A01Q.01A	2	3691004	10126220	130	0.0273	NEUTRAL	NA	18	"ADAM17,ALLC,ASAP2,CMPK2,COLEC11,CPSF3,DCDC2C,GRHL1,IAH1,ID2,ITGB1BP1,KIDINS220,MBOAT2,RNF144A,RSAD2,SOX11,TAF1B,YWHAQ"
TCGA.DM.A1HB	2	3713657	4277221	245	-0.0534	NEUTRAL	NA	2	"ALLC,DCDC2C"
TCGA.AG.3909.01A	2	3718678	7003556	22	-0.2902	NEUTRAL	NA	4	"ALLC,CMPK2,DCDC2C,SOX11"
TCGA.AA.A01D.01A	2	3718678	189855655	8496	-0.0727	NEUTRAL	NA	852	Too-Many
TCGA.AG.A01N.01A	2	3726015	198285716	9307	0.0958	NEUTRAL	NA	884	Too-Many
TCGA.DM.A28H	2	3814709	5280426	596	-0.0237	NEUTRAL	NA	1	DCDC2C
TCGA.F4.6807	2	4100892	243048759	70873	0	NEUTRAL	NA	1195	Too-Many
TCGA.A6.5661	2	4131149	238133447	69444	-0.0447	NEUTRAL	NA	1140	Too-Many
TCGA.AA.3850	2	4150556	8441184	1970	-0.02095	NEUTRAL	NA	4	"CMPK2,RNF144A,RSAD2,SOX11"
TCGA.AA.3941	2	4154551	8442546	1971	0.0377	NEUTRAL	NA	4	"CMPK2,RNF144A,RSAD2,SOX11"
TCGA.G4.6317	2	4154768	167171113	48527	0.013	NEUTRAL	NA	745	Too-Many
TCGA.DM.A1HB	2	4289809	5864937	646	-0.0655	NEUTRAL	NA	1	SOX11
TCGA.AA.3844	2	4658426	4957343	163	-0.2922	NEUTRAL	NA	0	None
TCGA.AA.3530	2	4970352	5234886	45	-0.0413	NEUTRAL	NA	0	None
TCGA.AA.3844	2	4970352	8441184	1603	-0.1484	NEUTRAL	NA	4	"CMPK2,RNF144A,RSAD2,SOX11"
TCGA.NH.A50V	2	5181372	39084756	12353	-0.0083	NEUTRAL	NA	187	Too-Many
TCGA.AA.3530	2	5245881	218622291	62668	-0.0072	NEUTRAL	NA	987	Too-Many
TCGA.AA.3685	2	5615323	243048759	70482	0.1756	NEUTRAL	NA	1195	Too-Many
TCGA.DC.5337	2	5738769	243048759	70131	0.0003	NEUTRAL	NA	1195	Too-Many
TCGA.DM.A1HB	2	5877657	6087399	136	-0.0404	NEUTRAL	NA	0	None
TCGA.DM.A1HB	2	6121305	13083795	2917	0.0256	NEUTRAL	NA	32	"ADAM17,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,CPSF3,CYS1,E2F6,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,NOL10,NTSR2,ODC1,PDIA6,PQLC3,RNF144A,ROCK2,RRM2,RSAD2,TAF1B,TRIB2,YWHAQ"
TCGA.NH.A6GC	2	6310879	65580220	21009	0.3258	NEUTRAL	NA	295	Too-Many
TCGA.AA.A02F.01A	2	6991556	97366079	4248	0.0769	NEUTRAL	NA	470	Too-Many
TCGA.AA.A00N.01A	2	7005133	8822917	17	-0.117	NEUTRAL	NA	4	"CMPK2,ID2,RNF144A,RSAD2"
TCGA.AG.3909.01A	2	7017895	9543323	79	0.2151	NEUTRAL	NA	6	"ASAP2,ID2,KIDINS220,MBOAT2,RNF144A,RSAD2"
TCGA.AG.4009.01A	2	7033719	10059109	139	-0.0086	NEUTRAL	NA	12	"ADAM17,ASAP2,CPSF3,IAH1,ID2,ITGB1BP1,KIDINS220,MBOAT2,RNF144A,RSAD2,TAF1B,YWHAQ"
TCGA.DM.A28H	2	7090543	7561731	241	0.0166	NEUTRAL	NA	1	RNF144A
TCGA.AA.A010.01A	2	7137016	10059749	146	0.237	NEUTRAL	NA	11	"ADAM17,ASAP2,CPSF3,IAH1,ID2,ITGB1BP1,KIDINS220,MBOAT2,RNF144A,TAF1B,YWHAQ"
TCGA.DC.4749	2	7283285	243048759	69582	-0.0065	NEUTRAL	NA	1191	Too-Many
TCGA.CK.6746	2	7650725	187055060	52678	-0.0026	NEUTRAL	NA	837	Too-Many
TCGA.AF.A56K	2	8290836	186882677	52384	0.2725	NEUTRAL	NA	837	Too-Many
TCGA.AA.3850	2	8442159	11320876	1111	0.36825	NEUTRAL	NA	23	"ADAM17,ASAP2,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,MBOAT2,NOL10,ODC1,PDIA6,PQLC3,RRM2,TAF1B,YWHAQ"
TCGA.AA.3844	2	8442159	12326035	1535	0.1385	NEUTRAL	NA	28	"ADAM17,ASAP2,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,E2F6,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,NOL10,NTSR2,ODC1,PDIA6,PQLC3,ROCK2,RRM2,TAF1B,YWHAQ"
TCGA.EI.6883	2	8455405	8567631	71	-0.0369	NEUTRAL	NA	0	None
TCGA.BM.6198	2	8499765	20815963	4837	0.05435	NEUTRAL	NA	52	"ADAM17,ASAP2,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,DDX1,E2F6,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LAPTM4A,LOC653602,LPIN1,MATN3,MBOAT2,MSGN1,MYCN,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PQLC3,PUM2,RAD51AP2,RDH14,RHOB,ROCK2,RRM2,SDC1,SMC6,TAF1B,TRIB2,TTC32,VSNL1,WDR35,YWHAQ"
TCGA.AA.A02K.01A	2	8928731	8933910	4	-0.418	NEUTRAL	NA	1	KIDINS220
TCGA.AA.A02K.01A	2	8936865	55143850	2812	0.0714	NEUTRAL	NA	249	Too-Many
TCGA.AA.A00N.01A	2	8938281	9541356	47	0.1212	NEUTRAL	NA	3	"ASAP2,KIDINS220,MBOAT2"
TCGA.AA.3930.01A	2	9419403	11959568	294	0.2296	NEUTRAL	NA	25	"ADAM17,ASAP2,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,E2F6,GREB1,GRHL1,HPCAL1,IAH1,ITGB1BP1,KCNF1,KLF11,LPIN1,NOL10,NTSR2,ODC1,PDIA6,PQLC3,ROCK2,RRM2,TAF1B,YWHAQ"
TCGA.AA.A00L.01A	2	9474813	18757430	348	-0.3085	NEUTRAL	NA	41	"ADAM17,ASAP2,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,DDX1,E2F6,FAM49A,FAM84A,GEN1,GREB1,GRHL1,HPCAL1,IAH1,ITGB1BP1,KCNF1,KCNS3,KLF11,LOC653602,LPIN1,MSGN1,MYCN,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,PDIA6,PQLC3,RAD51AP2,RDH14,ROCK2,RRM2,SMC6,TAF1B,TRIB2,VSNL1,YWHAQ"
TCGA.CK.5914.01A	2	9484620	9541356	16	0.2873	NEUTRAL	NA	1	ASAP2
TCGA.CK.5914.01A	2	9543323	9634724	36	-0.3246	NEUTRAL	NA	5	"ADAM17,ASAP2,CPSF3,IAH1,ITGB1BP1"
TCGA.AG.A014.01A	2	9543323	11315017	152	0.2056	NEUTRAL	NA	20	"ADAM17,ASAP2,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,GRHL1,HPCAL1,IAH1,ITGB1BP1,KCNF1,KLF11,NOL10,ODC1,PDIA6,PQLC3,RRM2,TAF1B,YWHAQ"
TCGA.AG.A00C.01A	2	9546912	11332242	155	0.2778	NEUTRAL	NA	20	"ADAM17,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,GRHL1,HPCAL1,IAH1,ITGB1BP1,KCNF1,KLF11,NOL10,ODC1,PDIA6,PQLC3,ROCK2,RRM2,TAF1B,YWHAQ"
TCGA.AG.3891.01A	2	9552386	11317863	153	0.2019	NEUTRAL	NA	19	"ADAM17,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,GRHL1,HPCAL1,IAH1,ITGB1BP1,KCNF1,KLF11,NOL10,ODC1,PDIA6,PQLC3,RRM2,TAF1B,YWHAQ"
TCGA.AA.A00F.01A	2	9554249	9612998	20	0.3618	NEUTRAL	NA	2	"CPSF3,ITGB1BP1"
TCGA.AA.A00N.01A	2	9624549	9983593	26	-0.2432	NEUTRAL	NA	4	"ADAM17,IAH1,TAF1B,YWHAQ"
TCGA.AG.3909.01A	2	9628254	9632970	4	-0.0961	NEUTRAL	NA	2	"ADAM17,IAH1"
TCGA.AA.A00F.01A	2	9630274	10566799	66	0.1156	NEUTRAL	NA	9	"ADAM17,C2orf48,CYS1,GRHL1,HPCAL1,KLF11,RRM2,TAF1B,YWHAQ"
TCGA.AG.3909.01A	2	9633819	9770251	19	0.262	NEUTRAL	NA	2	"ADAM17,YWHAQ"
TCGA.AG.3909.01A	2	9985301	10263544	36	-0.3042	NEUTRAL	NA	5	"CYS1,GRHL1,KLF11,RRM2,TAF1B"
TCGA.AA.A00N.01A	2	10008358	10091896	12	-0.0124	NEUTRAL	NA	2	"GRHL1,TAF1B"
TCGA.CK.5914.01A	2	10008358	10140674	27	-0.1101	NEUTRAL	NA	2	"GRHL1,TAF1B"
TCGA.DM.A28H	2	10029439	10194486	65	0.0718	NEUTRAL	NA	3	"GRHL1,KLF11,TAF1B"
TCGA.AA.A01Q.01A	2	10130749	10282331	20	-0.4642	NEUTRAL	NA	5	"C2orf48,CYS1,GRHL1,KLF11,RRM2"
TCGA.AA.A010.01A	2	10262709	10566799	13	-0.3866	NEUTRAL	NA	3	"C2orf48,HPCAL1,RRM2"
TCGA.AG.3909.01A	2	10281955	10566799	5	-0.1531	NEUTRAL	NA	2	"C2orf48,HPCAL1"
TCGA.AG.4009.01A	2	10281955	10566799	5	0.1732	NEUTRAL	NA	2	"C2orf48,HPCAL1"
TCGA.AA.A01Q.01A	2	10350395	10566799	4	0.3531	NEUTRAL	NA	2	"C2orf48,HPCAL1"
TCGA.EI.6883	2	10562046	186821041	51529	-0.0085	NEUTRAL	NA	822	Too-Many
TCGA.AA.A00F.01A	2	10712165	10829875	21	-0.0462	NEUTRAL	NA	1	NOL10
TCGA.AA.A00N.01A	2	10712165	10829875	22	0.3043	NEUTRAL	NA	1	NOL10
TCGA.AA.A01Q.01A	2	10712165	10829875	20	0.2008	NEUTRAL	NA	1	NOL10
TCGA.AG.3906.01A	2	10712165	10937754	41	0.0461	NEUTRAL	NA	3	"ATP6V1C2,NOL10,PDIA6"
TCGA.AG.4009.01A	2	10712165	11732890	96	-0.0501	NEUTRAL	NA	9	"ATP6V1C2,C2orf50,E2F6,GREB1,KCNF1,NOL10,PDIA6,PQLC3,ROCK2"
TCGA.A6.3808.01A	2	10712165	26693423	831	0.0319	NEUTRAL	NA	71	"ADCY3,ADGRF3,APOB,ASXL2,ATAD2B,ATP6V1C2,C2orf44,C2orf50,CENPO,DDX1,DNAJC27,DNMT3A,DRC1,DTNB,E2F6,EFR3B,EPT1,FAM228A,FAM228B,FAM49A,FAM84A,FKBP1B,GAREML,GDF7,GEN1,GREB1,HADHA,HADHB,HS1BP3,ITSN2,KCNF1,KCNS3,KIF3C,KLHL29,LAPTM4A,LDAH,LOC653602,LPIN1,MATN3,MFSD2B,MSGN1,MYCN,NBAS,NCOA1,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,OSR1,OTOF,PDIA6,PFN4,POMC,PQLC3,PTRHD1,PUM2,RAB10,RAD51AP2,RDH14,RHOB,ROCK2,SDC1,SF3B6,SMC6,TDRD15,TP53I3,TRIB2,TTC32,UBXN2A,VSNL1,WDR35"
TCGA.AG.3611.01A	2	10747294	10911918	19	0.2034	NEUTRAL	NA	2	"ATP6V1C2,NOL10"
TCGA.AA.A01F.01A	2	10784381	11315017	42	0.1387	NEUTRAL	NA	6	"ATP6V1C2,C2orf50,KCNF1,NOL10,PDIA6,PQLC3"
TCGA.AZ.4616	2	10828759	12099093	507	-0.4919	NEUTRAL	NA	11	"ATP6V1C2,C2orf50,E2F6,GREB1,KCNF1,LPIN1,NOL10,NTSR2,PDIA6,PQLC3,ROCK2"
TCGA.AA.3952	2	10846201	42589920	11397	0.0297	NEUTRAL	NA	177	Too-Many
TCGA.AG.3909.01A	2	10862924	10908794	5	-0.358	NEUTRAL	NA	1	ATP6V1C2
TCGA.AA.A010.01A	2	10862924	10925020	14	-0.1387	NEUTRAL	NA	2	"ATP6V1C2,PDIA6"
TCGA.CK.5914.01A	2	10862924	11317863	37	-0.3058	NEUTRAL	NA	5	"ATP6V1C2,C2orf50,KCNF1,PDIA6,PQLC3"
TCGA.AA.A00F.01A	2	10862924	11923904	56	0.2544	NEUTRAL	NA	10	"ATP6V1C2,C2orf50,E2F6,GREB1,KCNF1,LPIN1,NTSR2,PDIA6,PQLC3,ROCK2"
TCGA.AG.3611.01A	2	10918647	17864868	161	-0.1671	NEUTRAL	NA	20	"ATP6V1C2,C2orf50,DDX1,E2F6,FAM49A,FAM84A,GREB1,KCNF1,LOC653602,LPIN1,MYCN,NBAS,NTSR2,PDIA6,PQLC3,RAD51AP2,ROCK2,SMC6,TRIB2,VSNL1"
TCGA.AG.3909.01A	2	10924330	11317863	20	-0.4666	NEUTRAL	NA	5	"ATP6V1C2,C2orf50,KCNF1,PDIA6,PQLC3"
TCGA.AA.A01Q.01A	2	10924330	20792107	278	-0.0187	NEUTRAL	NA	34	"ATP6V1C2,C2orf50,DDX1,E2F6,FAM49A,FAM84A,GEN1,GREB1,KCNF1,KCNS3,LAPTM4A,LOC653602,LPIN1,MATN3,MSGN1,MYCN,NBAS,NT5C1B,NT5C1B-RDH14,NTSR2,OSR1,PDIA6,PQLC3,PUM2,RAD51AP2,RDH14,RHOB,ROCK2,SDC1,SMC6,TRIB2,TTC32,VSNL1,WDR35"
TCGA.AA.3543	2	10988058	11991864	365	-0.4642	NEUTRAL	NA	8	"C2orf50,E2F6,GREB1,KCNF1,LPIN1,NTSR2,PQLC3,ROCK2"
TCGA.AA.A017.01A	2	11052524	27372999	758	-0.0766	NEUTRAL	NA	85	"ABHD1,ADCY3,ADGRF3,AGBL5,APOB,ASXL2,ATAD2B,C2orf44,C2orf50,C2orf70,CENPA,CENPO,CGREF1,CIB4,DDX1,DNAJC27,DNMT3A,DPYSL5,DRC1,DTNB,E2F6,EFR3B,EMILIN1,EPT1,FAM228A,FAM228B,FAM49A,FAM84A,FKBP1B,GAREML,GDF7,GEN1,GREB1,HADHA,HADHB,HS1BP3,ITSN2,KCNF1,KCNK3,KCNS3,KHK,KIF3C,KLHL29,LAPTM4A,LDAH,LOC653602,LPIN1,MAPRE3,MATN3,MFSD2B,MSGN1,MYCN,NBAS,NCOA1,NT5C1B,NT5C1B-RDH14,NTSR2,OSR1,OST4,OTOF,PFN4,POMC,PQLC3,PREB,PRR30,PTRHD1,PUM2,RAB10,RAD51AP2,RDH14,RHOB,ROCK2,SDC1,SF3B6,SLC35F6,SMC6,TCF23,TDRD15,TMEM214,TP53I3,TRIB2,TTC32,UBXN2A,VSNL1,WDR35"
TCGA.AG.3896	2	11061155	104798367	27929	-0.0209	NEUTRAL	NA	500	Too-Many
TCGA.AG.3906.01A	2	11315017	15735548	155	0.012	NEUTRAL	NA	11	"DDX1,E2F6,FAM84A,GREB1,LOC653602,LPIN1,NBAS,NTSR2,PQLC3,ROCK2,TRIB2"
TCGA.AA.A01F.01A	2	11317863	11696723	5	-0.307	NEUTRAL	NA	4	"E2F6,GREB1,PQLC3,ROCK2"
TCGA.AG.A014.01A	2	11317863	27275846	733	-0.0998	NEUTRAL	NA	75	"ADCY3,ADGRF3,AGBL5,APOB,ASXL2,ATAD2B,C2orf44,C2orf70,CENPA,CENPO,CIB4,DDX1,DNAJC27,DNMT3A,DPYSL5,DRC1,DTNB,E2F6,EFR3B,EPT1,FAM228A,FAM228B,FAM49A,FAM84A,FKBP1B,GAREML,GDF7,GEN1,GREB1,HADHA,HADHB,HS1BP3,ITSN2,KCNK3,KCNS3,KIF3C,KLHL29,LAPTM4A,LDAH,LOC653602,LPIN1,MAPRE3,MATN3,MFSD2B,MSGN1,MYCN,NBAS,NCOA1,NT5C1B,NT5C1B-RDH14,NTSR2,OSR1,OTOF,PFN4,POMC,PQLC3,PTRHD1,PUM2,RAB10,RAD51AP2,RDH14,RHOB,ROCK2,SDC1,SF3B6,SLC35F6,SMC6,TDRD15,TMEM214,TP53I3,TRIB2,TTC32,UBXN2A,VSNL1,WDR35"
TCGA.CK.5914.01A	2	11323468	11720788	45	0.2811	NEUTRAL	NA	3	"E2F6,GREB1,ROCK2"
TCGA.AG.3909.01A	2	11323468	11727476	45	0.1122	NEUTRAL	NA	3	"E2F6,GREB1,ROCK2"
TCGA.AG.3891.01A	2	11323468	15701261	152	-0.1069	NEUTRAL	NA	9	"E2F6,FAM84A,GREB1,LOC653602,LPIN1,NBAS,NTSR2,ROCK2,TRIB2"
TCGA.AA.A00N.01A	2	11332242	11337255	5	-0.0593	NEUTRAL	NA	1	ROCK2
TCGA.AG.A00C.01A	2	11333858	20178470	269	0.0181	NEUTRAL	NA	24	"DDX1,E2F6,FAM49A,FAM84A,GEN1,GREB1,KCNS3,LOC653602,LPIN1,MSGN1,MYCN,NBAS,NT5C1B,NT5C1B-RDH14,NTSR2,OSR1,RAD51AP2,RDH14,ROCK2,SMC6,TRIB2,TTC32,VSNL1,WDR35"
TCGA.AA.A010.01A	2	11337255	11427720	24	0.3261	NEUTRAL	NA	1	ROCK2
TCGA.AA.A00N.01A	2	11389750	11484071	4	0.0484	NEUTRAL	NA	1	ROCK2
TCGA.AZ.4684.01A	2	11389750	12864703	76	-0.1503	NEUTRAL	NA	6	"E2F6,GREB1,LPIN1,NTSR2,ROCK2,TRIB2"
TCGA.AA.3850	2	11393671	12084725	250	0.35545	NEUTRAL	NA	5	"E2F6,GREB1,LPIN1,NTSR2,ROCK2"
TCGA.AG.A01W.01A	2	11670023	11697821	15	0.1216	NEUTRAL	NA	1	GREB1
TCGA.AA.A01F.01A	2	11702537	26700509	527	0.1379	NEUTRAL	NA	63	"ADCY3,ADGRF3,APOB,ASXL2,ATAD2B,C2orf44,CENPO,DDX1,DNAJC27,DNMT3A,DRC1,DTNB,EFR3B,EPT1,FAM228A,FAM228B,FAM49A,FAM84A,FKBP1B,GAREML,GDF7,GEN1,GREB1,HADHA,HADHB,HS1BP3,ITSN2,KCNS3,KIF3C,KLHL29,LAPTM4A,LDAH,LOC653602,LPIN1,MATN3,MFSD2B,MSGN1,MYCN,NBAS,NCOA1,NT5C1B,NT5C1B-RDH14,NTSR2,OSR1,OTOF,PFN4,POMC,PTRHD1,PUM2,RAB10,RAD51AP2,RDH14,RHOB,SDC1,SF3B6,SMC6,TDRD15,TP53I3,TRIB2,TTC32,UBXN2A,VSNL1,WDR35"
TCGA.AG.A01W.01A	2	11716020	11872638	19	-0.2775	NEUTRAL	NA	3	"GREB1,LPIN1,NTSR2"
TCGA.CK.5914.01A	2	11725235	11931775	45	-0.5089	NEUTRAL	NA	3	"GREB1,LPIN1,NTSR2"
TCGA.AG.4009.01A	2	11750803	11780369	16	0.152	NEUTRAL	NA	1	GREB1
TCGA.AA.A010.01A	2	11750803	15731989	107	0.0453	NEUTRAL	NA	8	"DDX1,FAM84A,GREB1,LOC653602,LPIN1,NBAS,NTSR2,TRIB2"
TCGA.AG.A01W.01A	2	11877035	15649417	60	0.1675	NEUTRAL	NA	5	"FAM84A,LOC653602,LPIN1,NBAS,TRIB2"
TCGA.AG.4009.01A	2	11919644	15378581	29	-0.1215	NEUTRAL	NA	5	"FAM84A,LOC653602,LPIN1,NBAS,TRIB2"
TCGA.AA.A00F.01A	2	11924964	37365358	1367	0.0242	NEUTRAL	NA	142	Too-Many
TCGA.AG.3909.01A	2	11931775	14779242	17	-0.1294	NEUTRAL	NA	4	"FAM84A,LOC653602,LPIN1,TRIB2"
TCGA.AA.A01K.01A	2	11935517	101565782	4383	-0.0704	NEUTRAL	NA	477	Too-Many
TCGA.CK.5914.01A	2	11959568	14779242	12	-0.4151	NEUTRAL	NA	4	"FAM84A,LOC653602,LPIN1,TRIB2"
TCGA.AA.3930.01A	2	11960490	15701261	66	-0.1398	NEUTRAL	NA	5	"FAM84A,LOC653602,LPIN1,NBAS,TRIB2"
TCGA.AA.3543	2	11996218	143387611	39052	-0.0461	NEUTRAL	NA	643	Too-Many
TCGA.AA.3941	2	12067849	12367697	207	0.1751	NEUTRAL	NA	0	None
TCGA.AA.3850	2	12084924	13200408	530	-0.07455	NEUTRAL	NA	1	TRIB2
TCGA.AZ.4616	2	12099425	243048759	67502	0.1477	NEUTRAL	NA	1163	Too-Many
TCGA.AA.3982	2	12114142	12153765	31	0.2716	NEUTRAL	NA	0	None
TCGA.AA.3982	2	12168074	12322053	103	0.0835	NEUTRAL	NA	0	None
TCGA.AA.3982	2	12322108	14308731	703	-0.3726	NEUTRAL	NA	1	TRIB2
TCGA.AA.3844	2	12326836	14628269	832	-0.4127	NEUTRAL	NA	1	TRIB2
TCGA.AA.3941	2	12380702	14294925	661	-0.3386	NEUTRAL	NA	1	TRIB2
TCGA.AA.3509.01A	2	12880441	21266318	277	0.267	NEUTRAL	NA	28	"APOB,DDX1,FAM49A,FAM84A,GDF7,GEN1,HS1BP3,KCNS3,LAPTM4A,LDAH,LOC653602,MATN3,MSGN1,MYCN,NBAS,NT5C1B,NT5C1B-RDH14,OSR1,PUM2,RAD51AP2,RDH14,RHOB,SDC1,SMC6,TRIB2,TTC32,VSNL1,WDR35"
TCGA.AZ.4684.01A	2	12880441	21266318	277	0.3113	NEUTRAL	NA	28	"APOB,DDX1,FAM49A,FAM84A,GDF7,GEN1,HS1BP3,KCNS3,LAPTM4A,LDAH,LOC653602,MATN3,MSGN1,MYCN,NBAS,NT5C1B,NT5C1B-RDH14,OSR1,PUM2,RAD51AP2,RDH14,RHOB,SDC1,SMC6,TRIB2,TTC32,VSNL1,WDR35"
TCGA.AG.A025.01A	2	12880441	26589953	532	-0.0127	NEUTRAL	NA	58	"ADCY3,ADGRF3,APOB,ASXL2,ATAD2B,C2orf44,CENPO,DDX1,DNAJC27,DNMT3A,DTNB,EFR3B,EPT1,FAM228A,FAM228B,FAM49A,FAM84A,FKBP1B,GAREML,GDF7,GEN1,HADHA,HADHB,HS1BP3,ITSN2,KCNS3,KIF3C,KLHL29,LAPTM4A,LDAH,LOC653602,MATN3,MFSD2B,MSGN1,MYCN,NBAS,NCOA1,NT5C1B,NT5C1B-RDH14,OSR1,PFN4,POMC,PTRHD1,PUM2,RAB10,RAD51AP2,RDH14,RHOB,SDC1,SF3B6,SMC6,TDRD15,TP53I3,TRIB2,TTC32,UBXN2A,VSNL1,WDR35"
TCGA.DM.A1HB	2	13093537	19948613	2566	-0.0141	NEUTRAL	NA	16	"DDX1,FAM49A,FAM84A,GEN1,KCNS3,LOC653602,MSGN1,MYCN,NBAS,NT5C1B,NT5C1B-RDH14,OSR1,RAD51AP2,RDH14,SMC6,VSNL1"
TCGA.AA.3811	2	13132976	14878003	575	-0.3927	NEUTRAL	NA	2	"FAM84A,LOC653602"
TCGA.F4.6459	2	13789182	243048759	66987	0.2393	NEUTRAL	NA	1162	Too-Many
TCGA.DM.A28H	2	14116990	16926283	1088	-0.0011	NEUTRAL	NA	6	"DDX1,FAM49A,FAM84A,LOC653602,MYCN,NBAS"
TCGA.AA.3982	2	14310402	23312144	3392	-0.106	NEUTRAL	NA	28	"APOB,DDX1,FAM49A,FAM84A,GDF7,GEN1,HS1BP3,KCNS3,LAPTM4A,LDAH,LOC653602,MATN3,MSGN1,MYCN,NBAS,NT5C1B,NT5C1B-RDH14,OSR1,PUM2,RAD51AP2,RDH14,RHOB,SDC1,SMC6,TDRD15,TTC32,VSNL1,WDR35"
TCGA.AG.3727	2	14463161	14497491	15	-0.4826	NEUTRAL	NA	0	None
TCGA.AG.3727	2	14500433	33817558	6270	0.0062	NEUTRAL	NA	133	Too-Many
TCGA.AA.3850	2	14541874	16707580	835	0.09995	NEUTRAL	NA	5	"DDX1,FAM84A,LOC653602,MYCN,NBAS"
TCGA.G4.6626	2	14592464	77142163	21509	-0.0474	NEUTRAL	NA	361	Too-Many
TCGA.AA.3941	2	14628269	16635774	758	0.2038	NEUTRAL	NA	5	"DDX1,FAM84A,LOC653602,MYCN,NBAS"
TCGA.AA.3844	2	14648429	14734639	51	0.0227	NEUTRAL	NA	0	None
TCGA.F4.6704	2	14707037	16068212	532	-0.093	NEUTRAL	NA	4	"DDX1,FAM84A,LOC653602,NBAS"
TCGA.AA.3976	2	14710363	243048759	66596	-0.091	NEUTRAL	NA	1162	Too-Many
TCGA.AA.3844	2	14738098	15170495	164	-0.2974	NEUTRAL	NA	2	"FAM84A,LOC653602"
TCGA.AA.3811	2	14879816	34324359	6374	0.1312	NEUTRAL	NA	131	Too-Many
TCGA.AA.3680	2	14984626	21852599	2719	-0.0072	NEUTRAL	NA	26	"APOB,DDX1,FAM49A,GDF7,GEN1,HS1BP3,KCNS3,LAPTM4A,LDAH,MATN3,MSGN1,MYCN,NBAS,NT5C1B,NT5C1B-RDH14,OSR1,PUM2,RAD51AP2,RDH14,RHOB,SDC1,SMC6,TDRD15,TTC32,VSNL1,WDR35"
TCGA.AA.3844	2	15172163	16540945	496	0.0404	NEUTRAL	NA	3	"DDX1,MYCN,NBAS"
TCGA.AA.A00N.01A	2	15307154	15415591	10	0.1825	NEUTRAL	NA	1	NBAS
TCGA.AG.A023.01A	2	15307154	15701261	52	0.171	NEUTRAL	NA	1	NBAS
TCGA.AG.3909.01A	2	15358870	15432619	8	-0.2092	NEUTRAL	NA	1	NBAS
TCGA.AG.4009.01A	2	15415591	15644203	34	0.2524	NEUTRAL	NA	1	NBAS
TCGA.AG.3909.01A	2	15448292	15651329	31	0.308	NEUTRAL	NA	1	NBAS
TCGA.AG.4009.01A	2	15651329	15743920	18	-0.265	NEUTRAL	NA	2	"DDX1,NBAS"
TCGA.AA.A00D.01A	2	15651329	15770076	32	-0.0515	NEUTRAL	NA	2	"DDX1,NBAS"
TCGA.AG.A01W.01A	2	15652705	15661372	8	-0.4424	NEUTRAL	NA	1	NBAS
TCGA.AG.A01W.01A	2	15661953	17747889	43	0.1381	NEUTRAL	NA	6	"DDX1,FAM49A,MYCN,NBAS,RAD51AP2,VSNL1"
TCGA.CK.5914.01A	2	15674618	15731989	10	-0.1842	NEUTRAL	NA	2	"DDX1,NBAS"
TCGA.AA.3930.01A	2	15731989	16082200	28	0.2064	NEUTRAL	NA	2	"DDX1,MYCN"
TCGA.AG.3891.01A	2	15735243	16734139	25	0.1846	NEUTRAL	NA	3	"DDX1,FAM49A,MYCN"
TCGA.AG.A023.01A	2	15761133	17847680	27	0.122	NEUTRAL	NA	6	"DDX1,FAM49A,MYCN,RAD51AP2,SMC6,VSNL1"
TCGA.AG.4009.01A	2	15761133	18736430	67	0.1887	NEUTRAL	NA	11	"DDX1,FAM49A,GEN1,KCNS3,MSGN1,MYCN,NT5C1B-RDH14,RAD51AP2,RDH14,SMC6,VSNL1"
TCGA.AG.3909.01A	2	15768508	16085565	6	-0.237	NEUTRAL	NA	2	"DDX1,MYCN"
TCGA.CK.5914.01A	2	15768508	16085565	10	-0.3794	NEUTRAL	NA	2	"DDX1,MYCN"
TCGA.A6.5665	2	15782806	231258449	62405	0.019	NEUTRAL	NA	1043	Too-Many
TCGA.AA.A00N.01A	2	15883530	16740706	6	-0.4228	NEUTRAL	NA	2	"FAM49A,MYCN"
TCGA.AA.3930.01A	2	16085565	17946116	47	-0.1155	NEUTRAL	NA	6	"FAM49A,GEN1,MYCN,RAD51AP2,SMC6,VSNL1"
TCGA.F4.6704	2	16358714	50531438	12302	0.0845	NEUTRAL	NA	205	Too-Many
TCGA.CA.5254	2	16484004	83146434	22650	-0.0099	NEUTRAL	NA	362	Too-Many
TCGA.AA.3844	2	16541712	18452345	759	-0.2527	NEUTRAL	NA	7	"FAM49A,GEN1,KCNS3,MSGN1,RAD51AP2,SMC6,VSNL1"
TCGA.AA.3941	2	16641988	19779053	1250	-0.1629	NEUTRAL	NA	11	"FAM49A,GEN1,KCNS3,MSGN1,NT5C1B,NT5C1B-RDH14,OSR1,RAD51AP2,RDH14,SMC6,VSNL1"
TCGA.AA.3850	2	16710120	19800917	1229	-0.26595	NEUTRAL	NA	11	"FAM49A,GEN1,KCNS3,MSGN1,NT5C1B,NT5C1B-RDH14,OSR1,RAD51AP2,RDH14,SMC6,VSNL1"
TCGA.AG.3906.01A	2	16736271	18112258	56	-0.0305	NEUTRAL	NA	7	"FAM49A,GEN1,KCNS3,MSGN1,RAD51AP2,SMC6,VSNL1"
TCGA.AG.3891.01A	2	16736271	24092501	198	-0.1935	NEUTRAL	NA	25	"APOB,ATAD2B,FAM49A,GDF7,GEN1,HS1BP3,KCNS3,KLHL29,LAPTM4A,LDAH,MATN3,MSGN1,NT5C1B,NT5C1B-RDH14,OSR1,PUM2,RAD51AP2,RDH14,RHOB,SDC1,SMC6,TDRD15,TTC32,VSNL1,WDR35"
TCGA.AA.A00N.01A	2	16742211	17912956	37	0.3025	NEUTRAL	NA	4	"FAM49A,RAD51AP2,SMC6,VSNL1"
TCGA.AA.A010.01A	2	16743223	17836416	12	0.3267	NEUTRAL	NA	3	"FAM49A,RAD51AP2,VSNL1"
TCGA.CK.5914.01A	2	16769275	17697623	6	-0.3136	NEUTRAL	NA	2	"FAM49A,RAD51AP2"
TCGA.AG.3591	2	17678047	243048759	65567	0.1293	NEUTRAL	NA	1156	Too-Many
TCGA.AA.3972	2	17681665	68182024	17580	0.0687	NEUTRAL	NA	259	Too-Many
TCGA.AG.3909.01A	2	17692034	17697623	5	-0.1717	NEUTRAL	NA	1	RAD51AP2
TCGA.AG.A01W.01A	2	17769958	17818998	16	-0.116	NEUTRAL	NA	1	VSNL1
TCGA.AG.3909.01A	2	17773320	17902180	22	0.3617	NEUTRAL	NA	2	"SMC6,VSNL1"
TCGA.AG.3611.01A	2	17876370	17907600	15	0.2083	NEUTRAL	NA	1	SMC6
TCGA.AG.3909.01A	2	17906484	17919441	5	-0.0011	NEUTRAL	NA	1	SMC6
TCGA.AG.A023.01A	2	17906484	27499558	613	-0.1512	NEUTRAL	NA	73	"ABHD1,ADCY3,ADGRF3,AGBL5,APOB,ASXL2,ATAD2B,ATRAID,C2orf44,C2orf70,CAD,CENPA,CENPO,CGREF1,CIB4,DNAJC27,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EMILIN1,EPT1,FAM228A,FAM228B,FKBP1B,GAREML,GDF7,GEN1,HADHA,HADHB,HS1BP3,ITSN2,KCNK3,KCNS3,KHK,KIF3C,KLHL29,LAPTM4A,LDAH,MAPRE3,MATN3,MFSD2B,MSGN1,NCOA1,NT5C1B,NT5C1B-RDH14,OSR1,OST4,OTOF,PFN4,POMC,PREB,PRR30,PTRHD1,PUM2,RAB10,RDH14,RHOB,SDC1,SF3B6,SLC30A3,SLC35F6,SLC5A6,SMC6,TCF23,TDRD15,TMEM214,TP53I3,TTC32,UBXN2A,WDR35"
TCGA.AG.3611.01A	2	17912274	18736430	21	-0.2292	NEUTRAL	NA	6	"GEN1,KCNS3,MSGN1,NT5C1B-RDH14,RDH14,SMC6"
TCGA.CK.5914.01A	2	17919441	17949944	8	-0.1548	NEUTRAL	NA	2	"GEN1,SMC6"
TCGA.AA.A00D.01A	2	17919441	27843972	688	-0.3497	NEUTRAL	NA	88	"ABHD1,ADCY3,ADGRF3,AGBL5,APOB,ASXL2,ATAD2B,ATRAID,C2orf16,C2orf44,C2orf70,CAD,CENPA,CENPO,CGREF1,CIB4,DNAJC27,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EIF2B4,EMILIN1,EPT1,FAM228A,FAM228B,FKBP1B,FNDC4,GAREML,GCKR,GDF7,GEN1,GTF3C2,HADHA,HADHB,HS1BP3,IFT172,ITSN2,KCNK3,KCNS3,KHK,KIF3C,KLHL29,KRTCAP3,LAPTM4A,LDAH,MAPRE3,MATN3,MFSD2B,MPV17,MSGN1,NCOA1,NRBP1,NT5C1B,NT5C1B-RDH14,OSR1,OST4,OTOF,PFN4,POMC,PPM1G,PREB,PRR30,PTRHD1,PUM2,RAB10,RDH14,RHOB,SDC1,SF3B6,SLC30A3,SLC35F6,SLC5A6,SMC6,SNX17,TCF23,TDRD15,TMEM214,TP53I3,TRIM54,TTC32,UBXN2A,UCN,WDR35,ZNF512,ZNF513"
TCGA.AA.A010.01A	2	17922837	18770621	28	-0.093	NEUTRAL	NA	7	"GEN1,KCNS3,MSGN1,NT5C1B,NT5C1B-RDH14,RDH14,SMC6"
TCGA.AA.A01C.01A	2	17946116	21237272	113	0.2105	NEUTRAL	NA	18	"APOB,GDF7,GEN1,HS1BP3,KCNS3,LAPTM4A,LDAH,MATN3,MSGN1,NT5C1B,NT5C1B-RDH14,OSR1,PUM2,RDH14,RHOB,SDC1,TTC32,WDR35"
TCGA.AG.3909.01A	2	17947799	18112258	12	0.0686	NEUTRAL	NA	3	"GEN1,KCNS3,MSGN1"
TCGA.AA.3930.01A	2	17959223	20169194	43	-0.2044	NEUTRAL	NA	9	"GEN1,KCNS3,MSGN1,NT5C1B,NT5C1B-RDH14,OSR1,RDH14,TTC32,WDR35"
TCGA.AZ.4614	2	18329768	66401579	16433	0.0093	NEUTRAL	NA	251	Too-Many
TCGA.AA.3844	2	18484652	19986405	696	-0.1774	NEUTRAL	NA	4	"NT5C1B,NT5C1B-RDH14,OSR1,RDH14"
TCGA.AA.3872	2	18492558	23301922	1781	0.0597	NEUTRAL	NA	16	"APOB,GDF7,HS1BP3,LAPTM4A,LDAH,MATN3,NT5C1B,NT5C1B-RDH14,OSR1,PUM2,RDH14,RHOB,SDC1,TDRD15,TTC32,WDR35"
TCGA.DM.A28H	2	18533873	20179219	736	-0.0202	NEUTRAL	NA	6	"NT5C1B,NT5C1B-RDH14,OSR1,RDH14,TTC32,WDR35"
TCGA.AA.A01Z	2	18569190	243048759	65123	-0.0034	NEUTRAL	NA	1150	Too-Many
TCGA.AG.3906.01A	2	18736430	19551997	12	-0.4177	NEUTRAL	NA	4	"NT5C1B,NT5C1B-RDH14,OSR1,RDH14"
TCGA.AG.3611.01A	2	18768722	33824166	1113	-0.1407	NEUTRAL	NA	120	Too-Many
TCGA.AY.5543	2	18882099	236864056	62641	0	NEUTRAL	NA	1087	Too-Many
TCGA.AG.A01W.01A	2	19416386	19964897	4	-0.3226	NEUTRAL	NA	1	OSR1
TCGA.AG.4009.01A	2	19551997	24307012	168	0.1574	NEUTRAL	NA	22	"APOB,ATAD2B,C2orf44,FAM228B,FKBP1B,GDF7,HS1BP3,KLHL29,LAPTM4A,LDAH,MATN3,MFSD2B,OSR1,PUM2,RHOB,SDC1,SF3B6,TDRD15,TP53I3,TTC32,UBXN2A,WDR35"
TCGA.AA.A00L.01A	2	19551997	74687330	2926	-0.3253	NEUTRAL	NA	325	Too-Many
TCGA.AG.3906.01A	2	19552865	20097613	3	0.127	NEUTRAL	NA	2	"OSR1,TTC32"
TCGA.AG.3909.01A	2	19552865	20097613	3	-0.3284	NEUTRAL	NA	2	"OSR1,TTC32"
TCGA.AA.A00N.01A	2	19552865	20100740	4	-0.4568	NEUTRAL	NA	2	"OSR1,TTC32"
TCGA.AG.3890	2	19732145	20815963	504	-0.0544	NEUTRAL	NA	7	"LAPTM4A,MATN3,PUM2,RHOB,SDC1,TTC32,WDR35"
TCGA.AA.3850	2	19803996	19840882	17	0.23885	NEUTRAL	NA	0	None
TCGA.AA.3850	2	19845158	20098207	185	0.18965	NEUTRAL	NA	1	TTC32
TCGA.DM.A1HB	2	19952458	22789632	910	-0.005	NEUTRAL	NA	12	"APOB,GDF7,HS1BP3,LAPTM4A,LDAH,MATN3,PUM2,RHOB,SDC1,TDRD15,TTC32,WDR35"
TCGA.AA.3844	2	19987367	20925303	366	0.1722	NEUTRAL	NA	10	"GDF7,HS1BP3,LAPTM4A,LDAH,MATN3,PUM2,RHOB,SDC1,TTC32,WDR35"
TCGA.AG.A01W.01A	2	20032676	26267607	369	0.0576	NEUTRAL	NA	36	"ADCY3,APOB,ASXL2,ATAD2B,C2orf44,CENPO,DNAJC27,DNMT3A,DTNB,EFR3B,FAM228A,FAM228B,FKBP1B,GDF7,HS1BP3,ITSN2,KIF3C,KLHL29,LAPTM4A,LDAH,MATN3,MFSD2B,NCOA1,PFN4,POMC,PTRHD1,PUM2,RAB10,RHOB,SDC1,SF3B6,TDRD15,TP53I3,TTC32,UBXN2A,WDR35"
TCGA.AG.3906.01A	2	20101415	20166436	20	-0.4407	NEUTRAL	NA	2	"TTC32,WDR35"
TCGA.AG.3909.01A	2	20101415	20169194	21	0.1507	NEUTRAL	NA	2	"TTC32,WDR35"
TCGA.AA.3967.01A	2	20101415	20205465	36	-0.3169	NEUTRAL	NA	3	"MATN3,TTC32,WDR35"
TCGA.CK.5914.01A	2	20151114	20178470	10	0.0945	NEUTRAL	NA	1	WDR35
TCGA.AA.3850	2	20155533	20467928	123	0.33015	NEUTRAL	NA	5	"LAPTM4A,MATN3,PUM2,SDC1,WDR35"
TCGA.AG.3906.01A	2	20169194	24090668	106	-2.00E-04	NEUTRAL	NA	13	"APOB,ATAD2B,GDF7,HS1BP3,KLHL29,LAPTM4A,LDAH,MATN3,PUM2,RHOB,SDC1,TDRD15,WDR35"
TCGA.AA.3930.01A	2	20173276	20402476	23	0.2302	NEUTRAL	NA	4	"LAPTM4A,MATN3,SDC1,WDR35"
TCGA.CK.5914.01A	2	20180397	20454960	26	-0.3394	NEUTRAL	NA	5	"LAPTM4A,MATN3,PUM2,SDC1,WDR35"
TCGA.AA.A010.01A	2	20194008	20460049	24	-0.4658	NEUTRAL	NA	4	"LAPTM4A,MATN3,PUM2,SDC1"
TCGA.AG.3909.01A	2	20232902	20457972	16	-0.379	NEUTRAL	NA	3	"LAPTM4A,PUM2,SDC1"
TCGA.AA.3967.01A	2	20232902	21245683	53	0.1485	NEUTRAL	NA	8	"APOB,GDF7,HS1BP3,LAPTM4A,LDAH,PUM2,RHOB,SDC1"
TCGA.AG.A00C.01A	2	20251124	21265194	63	0.0843	NEUTRAL	NA	8	"APOB,GDF7,HS1BP3,LAPTM4A,LDAH,PUM2,RHOB,SDC1"
TCGA.AA.3930.01A	2	20403525	21001004	46	-0.0414	NEUTRAL	NA	6	"GDF7,HS1BP3,LDAH,PUM2,RHOB,SDC1"
TCGA.AG.4021	2	20409321	63085847	14705	0.0058	NEUTRAL	NA	229	Too-Many
TCGA.AG.3909.01A	2	20460049	24255953	102	0.1113	NEUTRAL	NA	12	"APOB,ATAD2B,C2orf44,GDF7,HS1BP3,KLHL29,LDAH,MFSD2B,PUM2,RHOB,TDRD15,UBXN2A"
TCGA.AA.A010.01A	2	20462937	20824445	22	0.358	NEUTRAL	NA	3	"HS1BP3,PUM2,RHOB"
TCGA.DM.A28H	2	20664704	20760122	51	0.0573	NEUTRAL	NA	0	None
TCGA.5M.AAT4	2	20772918	30549427	2707	0.372	NEUTRAL	NA	92	"ABHD1,ADCY3,ADGRF3,AGBL5,ALK,APOB,ASXL2,ATAD2B,ATRAID,BRE,C2orf16,C2orf44,C2orf70,C2orf71,CAD,CCDC121,CENPA,CENPO,CGREF1,CIB4,CLIP4,DNAJC27,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EIF2B4,EMILIN1,EPT1,FAM179A,FAM228A,FAM228B,FKBP1B,FNDC4,FOSL2,GAREML,GCKR,GDF7,GPN1,GTF3C2,HADHA,HADHB,HS1BP3,IFT172,ITSN2,KCNK3,KHK,KIF3C,KLHL29,KRTCAP3,LBH,LDAH,MAPRE3,MFSD2B,MPV17,MRPL33,NCOA1,NRBP1,OST4,OTOF,PFN4,PLB1,POMC,PPM1G,PPP1CB,PREB,PRR30,PTRHD1,RAB10,RBKS,SF3B6,SLC30A3,SLC35F6,SLC4A1AP,SLC5A6,SNX17,SPDYA,SUPT7L,TCF23,TDRD15,TMEM214,TP53I3,TRIM54,TRMT61B,UBXN2A,UCN,WDR43,YPEL5,ZNF512,ZNF513"
TCGA.BM.6198	2	20817492	20843765	21	-0.31065	NEUTRAL	NA	1	HS1BP3
TCGA.AA.A00N.01A	2	20821991	23914506	56	-0.2919	NEUTRAL	NA	6	"APOB,GDF7,HS1BP3,KLHL29,LDAH,TDRD15"
TCGA.AG.3890	2	20823218	35218871	4314	-0.0472	NEUTRAL	NA	110	Too-Many
TCGA.BM.6198	2	20855910	38540155	5794	0.04535	NEUTRAL	NA	125	Too-Many
TCGA.AA.A01Q.01A	2	20901270	24307012	58	-0.0739	NEUTRAL	NA	12	"APOB,ATAD2B,C2orf44,FAM228B,FKBP1B,KLHL29,LDAH,MFSD2B,SF3B6,TDRD15,TP53I3,UBXN2A"
TCGA.AA.3850	2	20904996	21061933	43	-0.36275	NEUTRAL	NA	1	LDAH
TCGA.AA.3844	2	20925662	23342001	739	-0.3525	NEUTRAL	NA	3	"APOB,LDAH,TDRD15"
TCGA.AA.A010.01A	2	20939703	21001004	5	0.2375	NEUTRAL	NA	1	LDAH
TCGA.AA.3941	2	20947196	20994717	10	-0.3734	NEUTRAL	NA	1	LDAH
TCGA.DM.A28H	2	20982270	33731239	3619	0.0006	NEUTRAL	NA	107	Too-Many
TCGA.AA.3850	2	21067059	21217489	51	0.34675	NEUTRAL	NA	0	None
TCGA.AA.3941	2	21067059	21218804	52	0.3458	NEUTRAL	NA	0	None
TCGA.AA.3850	2	21218804	21564011	132	-0.23955	NEUTRAL	NA	2	"APOB,TDRD15"
TCGA.AA.A010.01A	2	21224600	21241814	9	-0.4523	NEUTRAL	NA	1	APOB
TCGA.AA.3930.01A	2	21224600	21263773	25	0.2886	NEUTRAL	NA	1	APOB
TCGA.AA.A01C.01A	2	21237918	27465508	493	-0.0562	NEUTRAL	NA	53	"ABHD1,ADCY3,ADGRF3,AGBL5,APOB,ASXL2,ATAD2B,ATRAID,C2orf44,C2orf70,CAD,CENPA,CENPO,CGREF1,CIB4,DNAJC27,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EMILIN1,EPT1,FAM228A,FAM228B,FKBP1B,GAREML,HADHA,HADHB,ITSN2,KCNK3,KHK,KIF3C,KLHL29,MAPRE3,MFSD2B,NCOA1,OST4,OTOF,PFN4,POMC,PREB,PRR30,PTRHD1,RAB10,SF3B6,SLC35F6,SLC5A6,TCF23,TDRD15,TMEM214,TP53I3,UBXN2A"
TCGA.CK.5914.01A	2	21250701	23907221	25	-0.0861	NEUTRAL	NA	3	"APOB,KLHL29,TDRD15"
TCGA.AA.3967.01A	2	21255217	23916089	12	-0.0468	NEUTRAL	NA	3	"APOB,KLHL29,TDRD15"
TCGA.AA.A010.01A	2	21256139	21265194	7	-0.3757	NEUTRAL	NA	1	APOB
TCGA.AA.3930.01A	2	21265194	24118680	49	-0.0856	NEUTRAL	NA	4	"APOB,ATAD2B,KLHL29,TDRD15"
TCGA.AA.A010.01A	2	21266318	24307012	83	0.2778	NEUTRAL	NA	11	"APOB,ATAD2B,C2orf44,FAM228B,FKBP1B,KLHL29,MFSD2B,SF3B6,TDRD15,TP53I3,UBXN2A"
TCGA.AA.3941	2	21271269	21675451	141	-0.1552	NEUTRAL	NA	1	TDRD15
TCGA.AH.6544	2	21311075	199611335	50346	0.0223	NEUTRAL	NA	831	Too-Many
TCGA.AG.A00C.01A	2	21360298	24080252	17	-0.2927	NEUTRAL	NA	3	"ATAD2B,KLHL29,TDRD15"
TCGA.AA.3544	2	21439896	73216154	17608	0.0662	NEUTRAL	NA	285	Too-Many
TCGA.AA.3850	2	21577742	21671498	30	0.21745	NEUTRAL	NA	0	None
TCGA.AA.3680	2	22323261	243048759	63799	-0.0204	NEUTRAL	NA	1134	Too-Many
TCGA.DM.A1HB	2	22846891	22897255	12	-0.053	NEUTRAL	NA	0	None
TCGA.AA.3850	2	22852251	23539160	261	-0.07445	NEUTRAL	NA	0	None
TCGA.DM.A1HB	2	22911726	79224825	18542	0.0008	NEUTRAL	NA	333	Too-Many
TCGA.AA.3941	2	23224349	23312144	53	0.2653	NEUTRAL	NA	0	None
TCGA.AA.3872	2	23302095	23327120	11	-0.488	NEUTRAL	NA	0	None
TCGA.AA.3982	2	23315191	23327120	8	-0.4472	NEUTRAL	NA	0	None
TCGA.AA.3941	2	23326323	23539160	87	0.2367	NEUTRAL	NA	0	None
TCGA.AA.3982	2	23328502	23956122	272	0.2467	NEUTRAL	NA	1	KLHL29
TCGA.AA.3872	2	23328502	72415802	16922	0.0814	NEUTRAL	NA	282	Too-Many
TCGA.AA.3844	2	23345328	24443270	337	0.1374	NEUTRAL	NA	12	"ATAD2B,C2orf44,FAM228A,FAM228B,FKBP1B,ITSN2,KLHL29,MFSD2B,PFN4,SF3B6,TP53I3,UBXN2A"
TCGA.AA.3850	2	23542032	34390084	3147	0.19695	NEUTRAL	NA	105	Too-Many
TCGA.A6.2678	2	23584564	40742900	5725	-0.0241	NEUTRAL	NA	134	Too-Many
TCGA.AA.3509.01A	2	23608046	23926009	14	-0.0725	NEUTRAL	NA	1	KLHL29
TCGA.AZ.4684.01A	2	23608046	23926009	14	-0.0689	NEUTRAL	NA	1	KLHL29
TCGA.CK.5914.01A	2	23914506	23926009	6	0.3533	NEUTRAL	NA	1	KLHL29
TCGA.AA.A00N.01A	2	23916089	23977480	8	0.1457	NEUTRAL	NA	2	"ATAD2B,KLHL29"
TCGA.AA.3982	2	23984746	24443270	65	0.3383	NEUTRAL	NA	11	"ATAD2B,C2orf44,FAM228A,FAM228B,FKBP1B,ITSN2,MFSD2B,PFN4,SF3B6,TP53I3,UBXN2A"
TCGA.CK.5914.01A	2	24005698	24246963	41	0.3206	NEUTRAL	NA	3	"ATAD2B,MFSD2B,UBXN2A"
TCGA.AZ.4684.01A	2	24042580	32094870	1098	-0.0563	NEUTRAL	NA	94	"ABHD1,ADCY3,ADGRF3,AGBL5,ALK,ASXL2,ATAD2B,ATRAID,BRE,C2orf16,C2orf44,C2orf70,C2orf71,CAD,CAPN13,CAPN14,CCDC121,CENPA,CENPO,CGREF1,CIB4,CLIP4,DNAJC27,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EHD3,EIF2B4,EMILIN1,EPT1,FAM179A,FAM228A,FAM228B,FKBP1B,FNDC4,FOSL2,GALNT14,GAREML,GCKR,GPN1,GTF3C2,HADHA,HADHB,IFT172,ITSN2,KCNK3,KHK,KIF3C,KRTCAP3,LBH,LCLAT1,MAPRE3,MEMO1,MFSD2B,MPV17,MRPL33,NCOA1,NRBP1,OST4,OTOF,PFN4,PLB1,POMC,PPM1G,PPP1CB,PREB,PRR30,PTRHD1,RAB10,RBKS,SF3B6,SLC30A3,SLC35F6,SLC4A1AP,SLC5A6,SNX17,SPDYA,SRD5A2,SUPT7L,TCF23,TMEM214,TP53I3,TRIM54,TRMT61B,UBXN2A,UCN,WDR43,XDH,YPEL5,ZNF512,ZNF513"
TCGA.AA.3509.01A	2	24042580	37143181	1374	-0.0786	NEUTRAL	NA	108	Too-Many
TCGA.AA.A00N.01A	2	24079269	24149415	15	0.3266	NEUTRAL	NA	1	ATAD2B
TCGA.AG.A00C.01A	2	24086234	24246963	27	0.0701	NEUTRAL	NA	3	"ATAD2B,MFSD2B,UBXN2A"
TCGA.AA.3967.01A	2	24086234	27263567	375	0.0425	NEUTRAL	NA	38	"ADCY3,ADGRF3,ASXL2,ATAD2B,C2orf44,C2orf70,CENPA,CENPO,CIB4,DNAJC27,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EPT1,FAM228A,FAM228B,FKBP1B,GAREML,HADHA,HADHB,ITSN2,KCNK3,KIF3C,MAPRE3,MFSD2B,NCOA1,OTOF,PFN4,POMC,PTRHD1,RAB10,SF3B6,SLC35F6,TMEM214,TP53I3,UBXN2A"
TCGA.AG.3891.01A	2	24098670	24118680	7	0.07	NEUTRAL	NA	1	ATAD2B
TCGA.AG.3906.01A	2	24103462	24307012	37	0.0868	NEUTRAL	NA	8	"ATAD2B,C2orf44,FAM228B,FKBP1B,MFSD2B,SF3B6,TP53I3,UBXN2A"
TCGA.AA.3930.01A	2	24149415	24392150	49	0.2034	NEUTRAL	NA	9	"ATAD2B,C2orf44,FAM228B,FKBP1B,MFSD2B,PFN4,SF3B6,TP53I3,UBXN2A"
TCGA.AG.3891.01A	2	24222495	26696274	284	0.0827	NEUTRAL	NA	29	"ADCY3,ADGRF3,ASXL2,C2orf44,CENPO,DNAJC27,DNMT3A,DRC1,DTNB,EFR3B,EPT1,FAM228A,FAM228B,FKBP1B,GAREML,HADHA,HADHB,ITSN2,KIF3C,MFSD2B,NCOA1,OTOF,PFN4,POMC,PTRHD1,RAB10,SF3B6,TP53I3,UBXN2A"
TCGA.CK.5914.01A	2	24253772	24432638	45	-0.5118	NEUTRAL	NA	8	"C2orf44,FAM228A,FAM228B,FKBP1B,ITSN2,PFN4,SF3B6,TP53I3"
TCGA.AA.A01Q.01A	2	24338381	24428026	8	-0.4196	NEUTRAL	NA	4	"FAM228A,FAM228B,ITSN2,PFN4"
TCGA.AA.A010.01A	2	24369602	26396039	212	0.2706	NEUTRAL	NA	16	"ADCY3,ASXL2,CENPO,DNAJC27,DNMT3A,DTNB,EFR3B,FAM228A,FAM228B,GAREML,ITSN2,KIF3C,NCOA1,POMC,PTRHD1,RAB10"
TCGA.AA.3930.01A	2	24395415	25174263	99	-0.0683	NEUTRAL	NA	7	"ADCY3,CENPO,DNAJC27,FAM228A,ITSN2,NCOA1,PTRHD1"
TCGA.AG.3906.01A	2	24398310	26357752	168	-0.0603	NEUTRAL	NA	14	"ADCY3,ASXL2,CENPO,DNAJC27,DNMT3A,DTNB,EFR3B,FAM228A,ITSN2,KIF3C,NCOA1,POMC,PTRHD1,RAB10"
TCGA.AG.3909.01A	2	24413233	24443711	12	-0.0766	NEUTRAL	NA	2	"FAM228A,ITSN2"
TCGA.AG.4009.01A	2	24426453	27249091	300	0.2129	NEUTRAL	NA	27	"ADCY3,ADGRF3,ASXL2,C2orf70,CENPA,CENPO,CIB4,DNAJC27,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EPT1,GAREML,HADHA,HADHB,ITSN2,KCNK3,KIF3C,MAPRE3,NCOA1,OTOF,POMC,PTRHD1,RAB10,SLC35F6"
TCGA.AG.A00C.01A	2	24427066	25016711	58	-0.1791	NEUTRAL	NA	4	"CENPO,ITSN2,NCOA1,PTRHD1"
TCGA.AA.A01Q.01A	2	24431060	25016711	56	0.2386	NEUTRAL	NA	4	"CENPO,ITSN2,NCOA1,PTRHD1"
TCGA.AA.3982	2	24447490	24509369	17	-0.3014	NEUTRAL	NA	1	ITSN2
TCGA.AA.3941	2	24447490	24951682	80	0.124	NEUTRAL	NA	2	"ITSN2,NCOA1"
TCGA.AA.3844	2	24447490	24968588	86	-0.2334	NEUTRAL	NA	2	"ITSN2,NCOA1"
TCGA.CK.5914.01A	2	24498562	25190025	75	0.151	NEUTRAL	NA	6	"ADCY3,CENPO,DNAJC27,ITSN2,NCOA1,PTRHD1"
TCGA.AA.3982	2	24514995	24917547	57	0.2088	NEUTRAL	NA	2	"ITSN2,NCOA1"
TCGA.AG.3909.01A	2	24523969	24905771	13	0.0305	NEUTRAL	NA	2	"ITSN2,NCOA1"
TCGA.AA.3982	2	24943565	24964494	11	-0.3492	NEUTRAL	NA	1	NCOA1
TCGA.AA.3982	2	24967723	28153100	600	0.309	NEUTRAL	NA	63	"ABHD1,ADCY3,ADGRF3,AGBL5,ASXL2,ATRAID,BRE,C2orf16,C2orf70,CAD,CCDC121,CENPA,CENPO,CGREF1,CIB4,DNAJC27,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EIF2B4,EMILIN1,EPT1,FNDC4,GAREML,GCKR,GPN1,GTF3C2,HADHA,HADHB,IFT172,KCNK3,KHK,KIF3C,KRTCAP3,MAPRE3,MPV17,MRPL33,NCOA1,NRBP1,OST4,OTOF,POMC,PPM1G,PREB,PRR30,PTRHD1,RAB10,RBKS,SLC30A3,SLC35F6,SLC4A1AP,SLC5A6,SNX17,SUPT7L,TCF23,TMEM214,TRIM54,UCN,ZNF512,ZNF513"
TCGA.AA.3844	2	24972216	27757149	554	0.2009	NEUTRAL	NA	54	"ABHD1,ADCY3,ADGRF3,AGBL5,ASXL2,ATRAID,C2orf70,CAD,CENPA,CENPO,CGREF1,CIB4,DNAJC27,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EIF2B4,EMILIN1,EPT1,FNDC4,GAREML,GCKR,GTF3C2,HADHA,HADHB,IFT172,KCNK3,KHK,KIF3C,KRTCAP3,MAPRE3,MPV17,NCOA1,NRBP1,OST4,OTOF,POMC,PPM1G,PREB,PRR30,PTRHD1,RAB10,SLC30A3,SLC35F6,SLC5A6,SNX17,TCF23,TMEM214,TRIM54,UCN,ZNF513"
TCGA.AA.A00N.01A	2	25013279	25606641	90	-0.4928	NEUTRAL	NA	8	"ADCY3,CENPO,DNAJC27,DNMT3A,DTNB,EFR3B,POMC,PTRHD1"
TCGA.AA.A01Q.01A	2	25022497	25190025	31	-0.1476	NEUTRAL	NA	3	"ADCY3,CENPO,DNAJC27"
TCGA.AG.A00C.01A	2	25022497	26486210	126	0.0959	NEUTRAL	NA	13	"ADCY3,ASXL2,CENPO,DNAJC27,DNMT3A,DTNB,EFR3B,GAREML,HADHA,HADHB,KIF3C,POMC,RAB10"
TCGA.AA.A00O.01A	2	25053531	28843074	588	-0.2314	NEUTRAL	NA	62	"ABHD1,ADCY3,ADGRF3,AGBL5,ASXL2,ATRAID,BRE,C2orf16,C2orf70,CAD,CCDC121,CENPA,CGREF1,CIB4,DNAJC27,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EIF2B4,EMILIN1,EPT1,FNDC4,FOSL2,GAREML,GCKR,GPN1,GTF3C2,HADHA,HADHB,IFT172,KCNK3,KHK,KIF3C,KRTCAP3,MAPRE3,MPV17,MRPL33,NRBP1,OST4,OTOF,PLB1,POMC,PPM1G,PREB,PRR30,RAB10,RBKS,SLC30A3,SLC35F6,SLC4A1AP,SLC5A6,SNX17,SUPT7L,TCF23,TMEM214,TRIM54,UCN,ZNF512,ZNF513"
TCGA.AA.3930.01A	2	25179884	25354572	15	0.1935	NEUTRAL	NA	2	"DNAJC27,EFR3B"
TCGA.AA.A01Q.01A	2	25194629	25387468	7	0.2963	NEUTRAL	NA	3	"DNAJC27,EFR3B,POMC"
TCGA.CK.5914.01A	2	25344490	25606641	48	-0.0242	NEUTRAL	NA	4	"DNMT3A,DTNB,EFR3B,POMC"
TCGA.A6.3810.01A	2	25457101	25464399	8	-0.1867	NEUTRAL	NA	1	DNMT3A
TCGA.AA.3930.01A	2	25461950	26357752	73	0.1542	NEUTRAL	NA	5	"ASXL2,DNMT3A,DTNB,KIF3C,RAB10"
TCGA.A6.3810.01A	2	25466742	27730807	511	0.1244	NEUTRAL	NA	47	"ABHD1,ADGRF3,AGBL5,ASXL2,ATRAID,C2orf70,CAD,CENPA,CGREF1,CIB4,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EIF2B4,EMILIN1,EPT1,FNDC4,GAREML,GCKR,GTF3C2,HADHA,HADHB,IFT172,KCNK3,KHK,KIF3C,KRTCAP3,MAPRE3,MPV17,NRBP1,OST4,OTOF,PPM1G,PREB,PRR30,RAB10,SLC30A3,SLC35F6,SLC5A6,SNX17,TCF23,TMEM214,TRIM54,UCN,ZNF513"
TCGA.AA.A00N.01A	2	25610106	26332600	46	0.3178	NEUTRAL	NA	4	"ASXL2,DTNB,KIF3C,RAB10"
TCGA.CK.5914.01A	2	25705613	26512716	78	0.2429	NEUTRAL	NA	7	"ASXL2,DTNB,GAREML,HADHA,HADHB,KIF3C,RAB10"
TCGA.AG.3909.01A	2	25705613	26531864	72	0.1493	NEUTRAL	NA	8	"ADGRF3,ASXL2,DTNB,GAREML,HADHA,HADHB,KIF3C,RAB10"
TCGA.AA.A01Q.01A	2	26152127	26410088	15	0.2424	NEUTRAL	NA	3	"GAREML,KIF3C,RAB10"
TCGA.AG.A01W.01A	2	26268635	26546919	85	-0.2283	NEUTRAL	NA	5	"ADGRF3,GAREML,HADHA,HADHB,RAB10"
TCGA.AA.3930.01A	2	26399173	26417382	10	-0.2434	NEUTRAL	NA	2	"GAREML,HADHA"
TCGA.AA.A01Q.01A	2	26414091	26420513	6	-0.307	NEUTRAL	NA	1	HADHA
TCGA.AA.A01Q.01A	2	26423976	26507687	23	0.1917	NEUTRAL	NA	2	"HADHA,HADHB"
TCGA.AA.A00N.01A	2	26432601	26461739	9	-0.341	NEUTRAL	NA	1	HADHA
TCGA.AG.3906.01A	2	26432601	26568942	36	-0.0648	NEUTRAL	NA	3	"ADGRF3,HADHA,HADHB"
TCGA.AA.3930.01A	2	26453022	26589953	38	0.1513	NEUTRAL	NA	4	"ADGRF3,EPT1,HADHA,HADHB"
TCGA.AA.A00N.01A	2	26467335	26512716	14	0.3176	NEUTRAL	NA	2	"HADHA,HADHB"
TCGA.AG.A00C.01A	2	26492743	26540300	23	-0.2954	NEUTRAL	NA	2	"ADGRF3,HADHB"
TCGA.AG.A01W.01A	2	26554098	26634809	18	-0.2811	NEUTRAL	NA	3	"ADGRF3,DRC1,EPT1"
TCGA.AG.A025.01A	2	26596195	28050387	408	-0.3959	NEUTRAL	NA	46	"ABHD1,AGBL5,ATRAID,C2orf16,C2orf70,CAD,CCDC121,CENPA,CGREF1,CIB4,DNAJC5G,DPYSL5,DRC1,EIF2B4,EMILIN1,EPT1,FNDC4,GCKR,GPN1,GTF3C2,IFT172,KCNK3,KHK,KRTCAP3,MAPRE3,MPV17,MRPL33,NRBP1,OST4,OTOF,PPM1G,PREB,PRR30,RBKS,SLC30A3,SLC35F6,SLC4A1AP,SLC5A6,SNX17,SUPT7L,TCF23,TMEM214,TRIM54,UCN,ZNF512,ZNF513"
TCGA.AG.3906.01A	2	26611825	27277914	101	-0.0556	NEUTRAL	NA	12	"AGBL5,C2orf70,CENPA,CIB4,DPYSL5,DRC1,EPT1,KCNK3,MAPRE3,OTOF,SLC35F6,TMEM214"
TCGA.AG.3909.01A	2	26624829	26951058	62	0.1595	NEUTRAL	NA	5	"C2orf70,CIB4,DRC1,KCNK3,OTOF"
TCGA.AA.A00N.01A	2	26624829	27000882	82	-0.0893	NEUTRAL	NA	6	"C2orf70,CIB4,DRC1,KCNK3,OTOF,SLC35F6"
TCGA.CK.5914.01A	2	26624829	27169724	97	0.1951	NEUTRAL	NA	8	"C2orf70,CENPA,CIB4,DPYSL5,DRC1,KCNK3,OTOF,SLC35F6"
TCGA.AA.A010.01A	2	26624829	27263567	119	0.2993	NEUTRAL	NA	10	"C2orf70,CENPA,CIB4,DPYSL5,DRC1,KCNK3,MAPRE3,OTOF,SLC35F6,TMEM214"
TCGA.AG.A01W.01A	2	26638956	27375566	164	0.0097	NEUTRAL	NA	19	"ABHD1,AGBL5,C2orf70,CENPA,CGREF1,CIB4,DPYSL5,DRC1,EMILIN1,KCNK3,KHK,MAPRE3,OST4,OTOF,PREB,PRR30,SLC35F6,TCF23,TMEM214"
TCGA.AG.A00C.01A	2	26647092	27169724	77	-0.0758	NEUTRAL	NA	8	"C2orf70,CENPA,CIB4,DPYSL5,DRC1,KCNK3,OTOF,SLC35F6"
TCGA.AA.3930.01A	2	26677478	26717760	35	-0.1535	NEUTRAL	NA	2	"DRC1,OTOF"
TCGA.AA.A01F.01A	2	26702085	26707303	7	-0.2372	NEUTRAL	NA	1	OTOF
TCGA.AA.A01F.01A	2	26712035	27466063	149	0.2375	NEUTRAL	NA	21	"ABHD1,AGBL5,ATRAID,C2orf70,CAD,CENPA,CGREF1,CIB4,DPYSL5,EMILIN1,KCNK3,KHK,MAPRE3,OST4,OTOF,PREB,PRR30,SLC35F6,SLC5A6,TCF23,TMEM214"
TCGA.AG.3891.01A	2	26712491	27435997	124	0.051	NEUTRAL	NA	20	"ABHD1,AGBL5,ATRAID,C2orf70,CENPA,CGREF1,CIB4,DPYSL5,EMILIN1,KCNK3,KHK,MAPRE3,OST4,OTOF,PREB,PRR30,SLC35F6,SLC5A6,TCF23,TMEM214"
TCGA.A6.3808.01A	2	26717760	27263567	70	0.3099	NEUTRAL	NA	9	"C2orf70,CENPA,CIB4,DPYSL5,KCNK3,MAPRE3,OTOF,SLC35F6,TMEM214"
TCGA.AA.A01Q.01A	2	26724548	27261876	52	-0.2878	NEUTRAL	NA	9	"C2orf70,CENPA,CIB4,DPYSL5,KCNK3,MAPRE3,OTOF,SLC35F6,TMEM214"
TCGA.AA.3930.01A	2	26724548	28814511	455	0.1985	NEUTRAL	NA	47	"ABHD1,AGBL5,ATRAID,BRE,C2orf16,C2orf70,CAD,CCDC121,CENPA,CGREF1,CIB4,DNAJC5G,DPYSL5,EIF2B4,EMILIN1,FNDC4,FOSL2,GCKR,GPN1,GTF3C2,IFT172,KCNK3,KHK,KRTCAP3,MAPRE3,MPV17,MRPL33,NRBP1,OST4,OTOF,PLB1,PPM1G,PREB,PRR30,RBKS,SLC30A3,SLC35F6,SLC4A1AP,SLC5A6,SNX17,SUPT7L,TCF23,TMEM214,TRIM54,UCN,ZNF512,ZNF513"
TCGA.DM.A288	2	26730520	98461801	20761	0.1074	NEUTRAL	NA	394	Too-Many
TCGA.AG.3909.01A	2	27121336	27165360	10	0.2556	NEUTRAL	NA	1	DPYSL5
TCGA.AA.A00N.01A	2	27121336	27169724	12	0.2087	NEUTRAL	NA	1	DPYSL5
TCGA.AG.A00C.01A	2	27245050	27304899	38	0.3565	NEUTRAL	NA	5	"AGBL5,EMILIN1,MAPRE3,OST4,TMEM214"
TCGA.CK.5914.01A	2	27245050	27457357	112	-0.2513	NEUTRAL	NA	14	"ABHD1,AGBL5,ATRAID,CAD,CGREF1,EMILIN1,KHK,MAPRE3,OST4,PREB,PRR30,SLC5A6,TCF23,TMEM214"
TCGA.AG.4009.01A	2	27256887	27263567	15	-0.1846	NEUTRAL	NA	1	TMEM214
TCGA.AF.3914.01A	2	27256887	27356348	58	-0.5006	NEUTRAL	NA	8	"ABHD1,AGBL5,CGREF1,EMILIN1,KHK,OST4,PREB,TMEM214"
TCGA.AA.3967.01A	2	27275846	28050387	301	0.3409	NEUTRAL	NA	35	"ABHD1,AGBL5,ATRAID,C2orf16,CAD,CCDC121,CGREF1,DNAJC5G,EIF2B4,EMILIN1,FNDC4,GCKR,GPN1,GTF3C2,IFT172,KHK,KRTCAP3,MPV17,MRPL33,NRBP1,OST4,PPM1G,PREB,PRR30,RBKS,SLC30A3,SLC4A1AP,SLC5A6,SNX17,SUPT7L,TCF23,TRIM54,UCN,ZNF512,ZNF513"
TCGA.AG.A014.01A	2	27276269	27830671	249	0.289	NEUTRAL	NA	29	"ABHD1,AGBL5,ATRAID,C2orf16,CAD,CGREF1,DNAJC5G,EIF2B4,EMILIN1,FNDC4,GCKR,GTF3C2,IFT172,KHK,KRTCAP3,MPV17,NRBP1,OST4,PPM1G,PREB,PRR30,SLC30A3,SLC5A6,SNX17,TCF23,TRIM54,UCN,ZNF512,ZNF513"
TCGA.AG.3906.01A	2	27278558	27522073	109	0.3395	NEUTRAL	NA	15	"ABHD1,AGBL5,ATRAID,CAD,CGREF1,DNAJC5G,EMILIN1,KHK,OST4,PREB,PRR30,SLC30A3,SLC5A6,TCF23,TRIM54"
TCGA.AG.3909.01A	2	27301884	27346765	18	-0.4063	NEUTRAL	NA	4	"ABHD1,CGREF1,EMILIN1,KHK"
TCGA.AG.A00C.01A	2	27307241	27322017	9	-0.0649	NEUTRAL	NA	2	"EMILIN1,KHK"
TCGA.AG.A00C.01A	2	27324110	27428841	30	0.2949	NEUTRAL	NA	6	"ABHD1,CGREF1,PREB,PRR30,SLC5A6,TCF23"
TCGA.AG.4009.01A	2	27351774	27566153	106	-0.122	NEUTRAL	NA	13	"ABHD1,ATRAID,CAD,DNAJC5G,GTF3C2,MPV17,PREB,PRR30,SLC30A3,SLC5A6,TCF23,TRIM54,UCN"
TCGA.AG.3909.01A	2	27356348	27429299	17	-0.1621	NEUTRAL	NA	4	"PREB,PRR30,SLC5A6,TCF23"
TCGA.AA.A01Q.01A	2	27357128	27428841	16	0.0307	NEUTRAL	NA	4	"PREB,PRR30,SLC5A6,TCF23"
TCGA.AA.A010.01A	2	27357128	27566153	108	-0.3758	NEUTRAL	NA	12	"ATRAID,CAD,DNAJC5G,GTF3C2,MPV17,PREB,PRR30,SLC30A3,SLC5A6,TCF23,TRIM54,UCN"
TCGA.AF.3914.01A	2	27359931	27564775	95	0.0326	NEUTRAL	NA	11	"ATRAID,CAD,DNAJC5G,GTF3C2,MPV17,PRR30,SLC30A3,SLC5A6,TCF23,TRIM54,UCN"
TCGA.AA.A017.01A	2	27375516	27672815	143	-0.3931	NEUTRAL	NA	17	"ATRAID,CAD,DNAJC5G,EIF2B4,GTF3C2,IFT172,KRTCAP3,MPV17,NRBP1,PPM1G,SLC30A3,SLC5A6,SNX17,TCF23,TRIM54,UCN,ZNF513"
TCGA.AG.A01W.01A	2	27398758	27412539	11	-0.3138	NEUTRAL	NA	0	None
TCGA.AA.A01Q.01A	2	27429299	27535809	69	-0.4644	NEUTRAL	NA	8	"ATRAID,CAD,DNAJC5G,MPV17,SLC30A3,SLC5A6,TRIM54,UCN"
TCGA.AG.3891.01A	2	27438126	27656159	110	0.3169	NEUTRAL	NA	13	"ATRAID,CAD,DNAJC5G,EIF2B4,GTF3C2,MPV17,NRBP1,PPM1G,SLC30A3,SNX17,TRIM54,UCN,ZNF513"
TCGA.AG.A01W.01A	2	27440733	27446574	11	-0.239	NEUTRAL	NA	1	CAD
TCGA.AG.3909.01A	2	27447181	27535809	52	-0.2919	NEUTRAL	NA	6	"CAD,DNAJC5G,MPV17,SLC30A3,TRIM54,UCN"
TCGA.AA.A00N.01A	2	27456151	27497991	29	-0.0536	NEUTRAL	NA	2	"CAD,SLC30A3"
TCGA.AG.A00C.01A	2	27456151	27550007	43	0.0276	NEUTRAL	NA	7	"CAD,DNAJC5G,GTF3C2,MPV17,SLC30A3,TRIM54,UCN"
TCGA.CK.5914.01A	2	27458071	27497991	26	0.1563	NEUTRAL	NA	2	"CAD,SLC30A3"
TCGA.AG.A01W.01A	2	27461063	27463405	4	0.0427	NEUTRAL	NA	1	CAD
TCGA.AA.A01C.01A	2	27466063	27857958	170	-0.3295	NEUTRAL	NA	20	"C2orf16,CAD,CCDC121,DNAJC5G,EIF2B4,FNDC4,GCKR,GPN1,GTF3C2,IFT172,KRTCAP3,MPV17,NRBP1,PPM1G,SLC30A3,SNX17,TRIM54,UCN,ZNF512,ZNF513"
TCGA.AA.A01F.01A	2	27478138	27485627	7	-0.1401	NEUTRAL	NA	1	SLC30A3
TCGA.AA.A01F.01A	2	27499558	27609892	64	0.2451	NEUTRAL	NA	9	"DNAJC5G,EIF2B4,GTF3C2,MPV17,PPM1G,SNX17,TRIM54,UCN,ZNF513"
TCGA.CK.5914.01A	2	27505548	27566153	32	0.1285	NEUTRAL	NA	4	"GTF3C2,MPV17,TRIM54,UCN"
TCGA.AG.A01W.01A	2	27509604	27516724	9	-0.464	NEUTRAL	NA	1	TRIM54
TCGA.AG.A01W.01A	2	27517467	27524172	12	0.2707	NEUTRAL	NA	1	TRIM54
TCGA.AG.A01W.01A	2	27525246	27542091	18	-0.2517	NEUTRAL	NA	3	"MPV17,TRIM54,UCN"
TCGA.AG.3906.01A	2	27527788	27549472	11	-0.0441	NEUTRAL	NA	4	"GTF3C2,MPV17,TRIM54,UCN"
TCGA.AA.A01Q.01A	2	27545253	27566153	16	0.0149	NEUTRAL	NA	2	"GTF3C2,MPV17"
TCGA.AG.A01W.01A	2	27547248	27556346	8	0.1775	NEUTRAL	NA	1	GTF3C2
TCGA.AG.A00C.01A	2	27550897	27825956	129	0.3545	NEUTRAL	NA	12	"C2orf16,EIF2B4,FNDC4,GCKR,GTF3C2,IFT172,KRTCAP3,NRBP1,PPM1G,SNX17,ZNF512,ZNF513"
TCGA.AG.A01W.01A	2	27557391	27561680	7	-0.1768	NEUTRAL	NA	1	GTF3C2
TCGA.AA.A00N.01A	2	27558152	27566153	8	0.0747	NEUTRAL	NA	1	GTF3C2
TCGA.AG.A01W.01A	2	27573588	27577453	6	0.0293	NEUTRAL	NA	1	GTF3C2
TCGA.AG.A01W.01A	2	27579834	27655563	12	-0.4909	NEUTRAL	NA	6	"EIF2B4,GTF3C2,NRBP1,PPM1G,SNX17,ZNF513"
TCGA.AA.A01Q.01A	2	27587218	27726329	98	-0.3766	NEUTRAL	NA	9	"EIF2B4,FNDC4,GCKR,IFT172,KRTCAP3,NRBP1,PPM1G,SNX17,ZNF513"
TCGA.AA.3862.01A	2	27591481	27917428	162	0.2944	NEUTRAL	NA	15	"C2orf16,CCDC121,EIF2B4,FNDC4,GCKR,GPN1,IFT172,KRTCAP3,NRBP1,PPM1G,SLC4A1AP,SNX17,SUPT7L,ZNF512,ZNF513"
TCGA.AA.3861.01A	2	27591481	61447398	2012	0.0222	NEUTRAL	NA	157	Too-Many
TCGA.AA.A01F.01A	2	27656159	27657948	5	-0.2187	NEUTRAL	NA	1	NRBP1
TCGA.AG.3891.01A	2	27657948	29354076	269	0.1642	NEUTRAL	NA	23	"BRE,C2orf16,C2orf71,CCDC121,CLIP4,FAM179A,FNDC4,FOSL2,GCKR,GPN1,IFT172,KRTCAP3,MRPL33,NRBP1,PLB1,PPP1CB,RBKS,SLC4A1AP,SPDYA,SUPT7L,TRMT61B,WDR43,ZNF512"
TCGA.AG.A01W.01A	2	27659403	28682804	120	-0.0671	NEUTRAL	NA	15	"BRE,C2orf16,CCDC121,FNDC4,FOSL2,GCKR,GPN1,IFT172,KRTCAP3,MRPL33,NRBP1,RBKS,SLC4A1AP,SUPT7L,ZNF512"
TCGA.AA.A01F.01A	2	27659582	88427404	2646	0.1109	NEUTRAL	NA	320	Too-Many
TCGA.A6.3808.01A	2	27663979	31805782	445	0.3105	NEUTRAL	NA	33	"ALK,BRE,C2orf16,C2orf71,CAPN13,CAPN14,CCDC121,CLIP4,EHD3,FAM179A,FNDC4,FOSL2,GALNT14,GCKR,GPN1,IFT172,KRTCAP3,LBH,LCLAT1,MRPL33,NRBP1,PLB1,PPP1CB,RBKS,SLC4A1AP,SPDYA,SRD5A2,SUPT7L,TRMT61B,WDR43,XDH,YPEL5,ZNF512"
TCGA.AA.A029.01A	2	27663979	74742740	2569	-0.1207	NEUTRAL	NA	258	Too-Many
TCGA.AG.4009.01A	2	27671741	27677185	6	-0.2632	NEUTRAL	NA	1	IFT172
TCGA.AG.A02X.01A	2	27671741	29416040	266	-0.2415	NEUTRAL	NA	22	"ALK,BRE,C2orf16,C2orf71,CCDC121,CLIP4,FAM179A,FNDC4,FOSL2,GCKR,GPN1,IFT172,MRPL33,PLB1,PPP1CB,RBKS,SLC4A1AP,SPDYA,SUPT7L,TRMT61B,WDR43,ZNF512"
TCGA.AG.3909.01A	2	27676040	27694990	17	0.2946	NEUTRAL	NA	1	IFT172
TCGA.AA.A00N.01A	2	27676040	27703906	24	-0.482	NEUTRAL	NA	1	IFT172
TCGA.AA.A017.01A	2	27676040	38974144	782	0.0046	NEUTRAL	NA	61	"ALK,ATL2,BIRC6,BRE,C2orf16,C2orf71,CAPN13,CAPN14,CCDC121,CDC42EP3,CEBPZ,CLIP4,CRIM1,CYP1B1,DPY30,EHD3,EIF2AK2,FAM179A,FAM98A,FEZ2,FNDC4,FOSL2,GALM,GALNT14,GCKR,GPATCH11,GPN1,HEATR5B,HNRNPLL,IFT172,LBH,LCLAT1,LTBP1,MEMO1,MRPL33,NDUFAF7,NLRC4,PLB1,PPP1CB,PRKD3,QPCT,RASGRP3,RBKS,RMDN2,SLC30A6,SLC4A1AP,SPAST,SPDYA,SRD5A2,SRSF7,STRN,SULT6B1,SUPT7L,TRMT61B,TTC27,VIT,WDR43,XDH,YIPF4,YPEL5,ZNF512"
TCGA.AG.4009.01A	2	27679331	27688228	11	0.0983	NEUTRAL	NA	1	IFT172
TCGA.AF.3914.01A	2	27679331	27706390	23	0.002	NEUTRAL	NA	1	IFT172
TCGA.AG.A023.01A	2	27679331	179404451	6962	-0.0283	NEUTRAL	NA	699	Too-Many
TCGA.AG.4009.01A	2	27688593	27707838	15	-0.2445	NEUTRAL	NA	1	IFT172
TCGA.AG.3909.01A	2	27699450	27730043	29	-0.1213	NEUTRAL	NA	3	"FNDC4,GCKR,IFT172"
TCGA.CK.5914.01A	2	27706113	27726329	20	-0.1431	NEUTRAL	NA	3	"FNDC4,GCKR,IFT172"
TCGA.AF.3914.01A	2	27720074	27728538	7	-0.2952	NEUTRAL	NA	1	GCKR
TCGA.AG.4009.01A	2	27726329	27805898	14	-0.1955	NEUTRAL	NA	3	"C2orf16,GCKR,ZNF512"
TCGA.AA.A00N.01A	2	27728538	27746095	9	-0.2456	NEUTRAL	NA	1	GCKR
TCGA.AA.A01Q.01A	2	27728538	28771673	101	0.1896	NEUTRAL	NA	12	"BRE,C2orf16,CCDC121,FOSL2,GCKR,GPN1,MRPL33,PLB1,RBKS,SLC4A1AP,SUPT7L,ZNF512"
TCGA.AF.3914.01A	2	27729300	71191886	2214	0.1504	NEUTRAL	NA	207	Too-Many
TCGA.CK.5914.01A	2	27760266	27825956	17	-0.3524	NEUTRAL	NA	2	"C2orf16,ZNF512"
TCGA.A6.3810.01A	2	27760266	37193331	662	0.225	NEUTRAL	NA	43	"ALK,BIRC6,BRE,C2orf16,C2orf71,CAPN13,CAPN14,CCDC121,CLIP4,CRIM1,DPY30,EHD3,FAM179A,FAM98A,FEZ2,FOSL2,GALNT14,GPN1,LBH,LCLAT1,LTBP1,MEMO1,MRPL33,NLRC4,PLB1,PPP1CB,RASGRP3,RBKS,SLC30A6,SLC4A1AP,SPAST,SPDYA,SRD5A2,STRN,SUPT7L,TRMT61B,TTC27,VIT,WDR43,XDH,YIPF4,YPEL5,ZNF512"
TCGA.AA.3844	2	27760999	28528933	138	-0.1082	NEUTRAL	NA	9	"BRE,C2orf16,CCDC121,GPN1,MRPL33,RBKS,SLC4A1AP,SUPT7L,ZNF512"
TCGA.AG.3906.01A	2	27799408	42719950	886	0.0294	NEUTRAL	NA	73	"ALK,ARHGEF33,ATL2,BIRC6,BRE,C2orf16,C2orf71,C2orf91,CAPN13,CAPN14,CCDC121,CDC42EP3,CDKL4,CEBPZ,CLIP4,COX7A2L,CRIM1,CYP1B1,DHX57,DPY30,EHD3,EIF2AK2,EML4,FAM179A,FAM98A,FEZ2,FOSL2,GALM,GALNT14,GEMIN6,GPATCH11,GPN1,HEATR5B,HNRNPLL,KCNG3,LBH,LCLAT1,LTBP1,MAP4K3,MEMO1,MORN2,MRPL33,NDUFAF7,NLRC4,PKDCC,PLB1,PPP1CB,PRKD3,QPCT,RASGRP3,RBKS,RMDN2,SLC30A6,SLC4A1AP,SLC8A1,SOS1,SPAST,SPDYA,SRD5A2,SRSF7,STRN,SULT6B1,SUPT7L,THUMPD2,TMEM178A,TRMT61B,TTC27,VIT,WDR43,XDH,YIPF4,YPEL5,ZNF512"
TCGA.AA.A010.01A	2	27804563	27843972	15	0.0221	NEUTRAL	NA	2	"C2orf16,ZNF512"
TCGA.AG.4009.01A	2	27806457	28865683	132	0.2736	NEUTRAL	NA	10	"BRE,CCDC121,FOSL2,GPN1,MRPL33,PLB1,RBKS,SLC4A1AP,SUPT7L,ZNF512"
TCGA.CK.5914.01A	2	27830671	27994564	43	0.3473	NEUTRAL	NA	5	"CCDC121,GPN1,SLC4A1AP,SUPT7L,ZNF512"
TCGA.AG.3909.01A	2	27830671	28812808	96	0.3091	NEUTRAL	NA	10	"BRE,CCDC121,FOSL2,GPN1,MRPL33,PLB1,RBKS,SLC4A1AP,SUPT7L,ZNF512"
TCGA.AG.A00C.01A	2	27830671	28865683	123	-0.1054	NEUTRAL	NA	10	"BRE,CCDC121,FOSL2,GPN1,MRPL33,PLB1,RBKS,SLC4A1AP,SUPT7L,ZNF512"
TCGA.AG.A014.01A	2	27837986	74603779	2483	-0.0925	NEUTRAL	NA	240	Too-Many
TCGA.AA.A01C.01A	2	27861000	89160022	2977	0.0366	NEUTRAL	NA	317	Too-Many
TCGA.AA.A010.01A	2	27861715	27865243	4	-0.1537	NEUTRAL	NA	1	GPN1
TCGA.AG.A00Y.01A	2	27862855	137748385	5087	0.1213	NEUTRAL	NA	540	Too-Many
TCGA.AA.A00D.01A	2	27864027	28004440	26	-0.1196	NEUTRAL	NA	5	"GPN1,MRPL33,RBKS,SLC4A1AP,SUPT7L"
TCGA.AA.A010.01A	2	27898367	27900554	3	-0.2358	NEUTRAL	NA	1	SLC4A1AP
TCGA.AA.3862.01A	2	27930418	31805782	321	-0.138	NEUTRAL	NA	22	"ALK,BRE,C2orf71,CAPN13,CAPN14,CLIP4,EHD3,FAM179A,FOSL2,GALNT14,LBH,LCLAT1,MRPL33,PLB1,PPP1CB,RBKS,SPDYA,SRD5A2,TRMT61B,WDR43,XDH,YPEL5"
TCGA.AA.A010.01A	2	27994564	28561252	30	0.3356	NEUTRAL	NA	3	"BRE,MRPL33,RBKS"
TCGA.AA.3967.01A	2	28055517	32530541	331	0.0111	NEUTRAL	NA	27	"ALK,BRE,C2orf71,CAPN13,CAPN14,CLIP4,DPY30,EHD3,FAM179A,FOSL2,GALNT14,LBH,LCLAT1,MEMO1,NLRC4,PLB1,PPP1CB,RBKS,SLC30A6,SPAST,SPDYA,SRD5A2,TRMT61B,WDR43,XDH,YIPF4,YPEL5"
TCGA.AG.A025.01A	2	28055517	234371239	10523	-0.0228	NEUTRAL	NA	983	Too-Many
TCGA.AA.3982	2	28178658	28323006	23	-0.3763	NEUTRAL	NA	1	BRE
TCGA.AA.3982	2	28324129	34208145	2090	0.1299	NEUTRAL	NA	31	"ALK,BIRC6,BRE,C2orf71,CAPN13,CAPN14,CLIP4,DPY30,EHD3,FAM179A,FAM98A,FOSL2,GALNT14,LBH,LCLAT1,LTBP1,MEMO1,NLRC4,PLB1,PPP1CB,RASGRP3,SLC30A6,SPAST,SPDYA,SRD5A2,TRMT61B,TTC27,WDR43,XDH,YIPF4,YPEL5"
TCGA.AA.A00D.01A	2	28532871	28634705	6	-0.1165	NEUTRAL	NA	2	"BRE,FOSL2"
TCGA.AA.3844	2	28535060	29294753	250	0.2434	NEUTRAL	NA	9	"BRE,C2orf71,FAM179A,FOSL2,PLB1,PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.AY.A71X	2	28604878	178029849	43248	0.003	NEUTRAL	NA	674	Too-Many
TCGA.AG.A01W.01A	2	28702748	29146935	70	-0.212	NEUTRAL	NA	5	"PLB1,PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.AA.A010.01A	2	28718942	28752520	8	0.1925	NEUTRAL	NA	1	PLB1
TCGA.AA.A01Q.01A	2	28772818	28840523	29	-0.3499	NEUTRAL	NA	1	PLB1
TCGA.AA.A01Q.01A	2	28841160	32664534	236	0.1691	NEUTRAL	NA	25	"ALK,BIRC6,C2orf71,CAPN13,CAPN14,CLIP4,DPY30,EHD3,FAM179A,GALNT14,LBH,LCLAT1,MEMO1,NLRC4,PLB1,PPP1CB,SLC30A6,SPAST,SPDYA,SRD5A2,TRMT61B,WDR43,XDH,YIPF4,YPEL5"
TCGA.AA.A00O.01A	2	28843428	70039757	1926	0.0364	NEUTRAL	NA	179	Too-Many
TCGA.AA.A00D.01A	2	28974917	29344218	30	-0.1878	NEUTRAL	NA	7	"C2orf71,CLIP4,FAM179A,PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.AA.3930.01A	2	28974917	31403753	165	0.0756	NEUTRAL	NA	14	"ALK,C2orf71,CAPN13,CAPN14,CLIP4,FAM179A,GALNT14,LBH,LCLAT1,PPP1CB,SPDYA,TRMT61B,WDR43,YPEL5"
TCGA.AG.4009.01A	2	28999680	29051967	11	-0.4114	NEUTRAL	NA	2	"PPP1CB,SPDYA"
TCGA.AG.3909.01A	2	28999680	29140721	25	-0.0996	NEUTRAL	NA	4	"PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.AG.A00C.01A	2	28999680	29159704	32	0.1972	NEUTRAL	NA	4	"PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.AA.A010.01A	2	28999680	29169260	38	-0.0015	NEUTRAL	NA	4	"PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.CK.5914.01A	2	29001685	29135408	22	-0.2465	NEUTRAL	NA	4	"PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.AG.4009.01A	2	29063021	29124844	9	0.0251	NEUTRAL	NA	3	"SPDYA,TRMT61B,WDR43"
TCGA.A6.5666	2	29112101	243048759	62052	0.243	NEUTRAL	NA	1054	Too-Many
TCGA.AG.4009.01A	2	29129309	29145718	5	-0.4222	NEUTRAL	NA	1	WDR43
TCGA.AG.4009.01A	2	29147811	29169260	10	0.0832	NEUTRAL	NA	1	WDR43
TCGA.AG.A00C.01A	2	29160741	32481747	214	-0.148	NEUTRAL	NA	19	"ALK,C2orf71,CAPN13,CAPN14,CLIP4,DPY30,EHD3,FAM179A,GALNT14,LBH,LCLAT1,MEMO1,NLRC4,SLC30A6,SPAST,SRD5A2,WDR43,XDH,YPEL5"
TCGA.CK.5914.01A	2	29234256	29356471	24	0.2583	NEUTRAL	NA	3	"C2orf71,CLIP4,FAM179A"
TCGA.AG.3909.01A	2	29234256	29404406	34	0.3207	NEUTRAL	NA	3	"C2orf71,CLIP4,FAM179A"
TCGA.AA.A00Q.01A	2	29256291	47606045	916	-0.3495	NEUTRAL	NA	89	"ABCG5,ABCG8,ALK,ARHGEF33,ATL2,ATP6V1E2,BIRC6,C1GALT1C1L,C2orf61,C2orf71,C2orf91,CALM2,CAMKMT,CAPN13,CAPN14,CDC42EP3,CDKL4,CEBPZ,CLIP4,COX7A2L,CRIM1,CRIPT,CYP1B1,DHX57,DPY30,DYNC2LI1,EHD3,EIF2AK2,EML4,EPAS1,EPCAM,FAM179A,FAM98A,FEZ2,GALM,GALNT14,GEMIN6,GPATCH11,HAAO,HEATR5B,HNRNPLL,KCNG3,LBH,LCLAT1,LRPPRC,LTBP1,MAP4K3,MCFD2,MEMO1,MORN2,MTA3,NDUFAF7,NLRC4,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PREPL,PRKCE,PRKD3,QPCT,RASGRP3,RHOQ,RMDN2,SIX2,SIX3,SLC30A6,SLC3A1,SLC8A1,SOCS5,SOS1,SPAST,SRBD1,SRD5A2,SRSF7,STRN,SULT6B1,THADA,THUMPD2,TMEM178A,TMEM247,TTC27,TTC7A,VIT,XDH,YIPF4,YPEL5,ZFP36L2"
TCGA.AG.A01W.01A	2	29273089	31257252	80	-0.0979	NEUTRAL	NA	9	"ALK,C2orf71,CAPN13,CLIP4,FAM179A,GALNT14,LBH,LCLAT1,YPEL5"
TCGA.5M.AATE	2	29285441	215702866	53060	0.2638	NEUTRAL	NA	831	Too-Many
TCGA.AA.3844	2	29297308	34280661	1797	-0.0487	NEUTRAL	NA	22	"ALK,BIRC6,CAPN13,CAPN14,CLIP4,DPY30,EHD3,FAM98A,GALNT14,LBH,LCLAT1,LTBP1,MEMO1,NLRC4,RASGRP3,SLC30A6,SPAST,SRD5A2,TTC27,XDH,YIPF4,YPEL5"
TCGA.AG.4009.01A	2	29344218	30862931	55	-0.0449	NEUTRAL	NA	5	"ALK,CLIP4,LBH,LCLAT1,YPEL5"
TCGA.AG.3891.01A	2	29354973	33744962	318	-0.0979	NEUTRAL	NA	21	"ALK,BIRC6,CAPN13,CAPN14,CLIP4,DPY30,EHD3,GALNT14,LBH,LCLAT1,LTBP1,MEMO1,NLRC4,RASGRP3,SLC30A6,SPAST,SRD5A2,TTC27,XDH,YIPF4,YPEL5"
TCGA.AA.A010.01A	2	29379177	29432629	13	-0.1075	NEUTRAL	NA	2	"ALK,CLIP4"
TCGA.AG.A02X.01A	2	29429989	70406615	1890	-0.2347	NEUTRAL	NA	177	Too-Many
TCGA.AA.3941	2	29477418	30053341	312	0.1941	NEUTRAL	NA	1	ALK
TCGA.AG.A036.01A	2	29608235	242463492	11961	0.0071	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3679	2	30029874	30073649	25	0.0421	NEUTRAL	NA	1	ALK
TCGA.AA.3941	2	30060020	30292477	90	-0.1855	NEUTRAL	NA	1	ALK
TCGA.AG.3909.01A	2	30142807	30790898	12	-0.0957	NEUTRAL	NA	4	"ALK,LBH,LCLAT1,YPEL5"
TCGA.CK.5914.01A	2	30142807	30790898	13	0.0875	NEUTRAL	NA	4	"ALK,LBH,LCLAT1,YPEL5"
TCGA.5M.AAT4	2	30551365	52179909	8320	-0.4861	NEUTRAL	NA	95	"ABCG5,ABCG8,ARHGEF33,ATL2,ATP6V1E2,BIRC6,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,CAPN13,CAPN14,CDC42EP3,CDKL4,CEBPZ,COX7A2L,CRIM1,CRIPT,CYP1B1,DHX57,DPY30,DYNC2LI1,EHD3,EIF2AK2,EML4,EPAS1,EPCAM,FAM98A,FBXO11,FEZ2,FOXN2,FSHR,GALM,GALNT14,GEMIN6,GPATCH11,GTF2A1L,HAAO,HEATR5B,HNRNPLL,KCNG3,KCNK12,LCLAT1,LHCGR,LRPPRC,LTBP1,MAP4K3,MCFD2,MEMO1,MORN2,MSH2,MSH6,MTA3,NDUFAF7,NLRC4,NRXN1,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PPP1R21,PREPL,PRKCE,PRKD3,QPCT,RASGRP3,RHOQ,RMDN2,SIX2,SIX3,SLC30A6,SLC3A1,SLC8A1,SOCS5,SOS1,SPAST,SRBD1,SRD5A2,SRSF7,STON1,STON1-GTF2A1L,STRN,SULT6B1,THADA,THUMPD2,TMEM178A,TMEM247,TTC27,TTC7A,VIT,XDH,YIPF4,ZFP36L2"
TCGA.AD.6899	2	30629875	243048759	61295	0.1241	NEUTRAL	NA	1047	Too-Many
TCGA.AA.3941	2	30681356	30849342	44	-0.2059	NEUTRAL	NA	1	LCLAT1
TCGA.AA.3941	2	30853299	31665107	427	0.3123	NEUTRAL	NA	6	"CAPN13,CAPN14,EHD3,GALNT14,LCLAT1,XDH"
TCGA.AG.4009.01A	2	30953542	31181200	29	0.3455	NEUTRAL	NA	2	"CAPN13,GALNT14"
TCGA.AG.3892	2	30975455	243048759	61140	-0.0029	NEUTRAL	NA	1046	Too-Many
TCGA.AG.4009.01A	2	31189023	32481747	100	0.0721	NEUTRAL	NA	10	"CAPN14,DPY30,EHD3,GALNT14,MEMO1,NLRC4,SLC30A6,SPAST,SRD5A2,XDH"
TCGA.AG.A01W.01A	2	31270715	31281607	7	-0.2765	NEUTRAL	NA	1	GALNT14
TCGA.AG.A01W.01A	2	31310992	32194648	65	0.1431	NEUTRAL	NA	6	"CAPN14,EHD3,GALNT14,MEMO1,SRD5A2,XDH"
TCGA.AA.3930.01A	2	31457471	37353382	376	0.0078	NEUTRAL	NA	21	"BIRC6,CRIM1,DPY30,EHD3,EIF2AK2,FAM98A,FEZ2,GPATCH11,HEATR5B,LTBP1,MEMO1,NLRC4,RASGRP3,SLC30A6,SPAST,SRD5A2,STRN,TTC27,VIT,XDH,YIPF4"
TCGA.AA.3941	2	31672914	31788988	17	-0.4827	NEUTRAL	NA	1	SRD5A2
TCGA.AA.3941	2	31791792	34055949	591	0.2707	NEUTRAL	NA	12	"BIRC6,DPY30,FAM98A,LTBP1,MEMO1,NLRC4,RASGRP3,SLC30A6,SPAST,SRD5A2,TTC27,YIPF4"
TCGA.A6.3808.01A	2	32093402	32903859	147	-0.3578	NEUTRAL	NA	8	"BIRC6,DPY30,MEMO1,NLRC4,SLC30A6,SPAST,TTC27,YIPF4"
TCGA.AA.A010.01A	2	32094870	32188176	10	0.0635	NEUTRAL	NA	1	MEMO1
TCGA.AZ.4684.01A	2	32157074	38156383	389	-0.0484	NEUTRAL	NA	25	"BIRC6,CDC42EP3,CEBPZ,CRIM1,DPY30,EIF2AK2,FAM98A,FEZ2,GPATCH11,HEATR5B,LTBP1,MEMO1,NDUFAF7,NLRC4,PRKD3,QPCT,RASGRP3,RMDN2,SLC30A6,SPAST,STRN,SULT6B1,TTC27,VIT,YIPF4"
TCGA.AA.3862.01A	2	32168350	32434520	36	-0.3713	NEUTRAL	NA	4	"DPY30,MEMO1,SLC30A6,SPAST"
TCGA.AG.A01W.01A	2	32232907	32519875	45	0.0057	NEUTRAL	NA	6	"DPY30,MEMO1,NLRC4,SLC30A6,SPAST,YIPF4"
TCGA.AA.A00N.01A	2	32264283	32477451	41	0.3276	NEUTRAL	NA	4	"DPY30,NLRC4,SLC30A6,SPAST"
TCGA.AA.3862.01A	2	32445235	32858895	94	0.3202	NEUTRAL	NA	5	"BIRC6,NLRC4,SLC30A6,TTC27,YIPF4"
TCGA.AG.3909.01A	2	32481747	32698133	37	-0.4786	NEUTRAL	NA	3	"BIRC6,NLRC4,YIPF4"
TCGA.AA.A010.01A	2	32515500	32757229	67	-0.1262	NEUTRAL	NA	2	"BIRC6,YIPF4"
TCGA.AG.A00C.01A	2	32526414	32692556	27	0.0847	NEUTRAL	NA	2	"BIRC6,YIPF4"
TCGA.AG.A01W.01A	2	32541742	32560953	16	-0.0431	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	32578152	37206910	211	0.0137	NEUTRAL	NA	9	"BIRC6,CRIM1,FAM98A,FEZ2,LTBP1,RASGRP3,STRN,TTC27,VIT"
TCGA.AA.A00N.01A	2	32582248	32655894	12	0.1483	NEUTRAL	NA	1	BIRC6
TCGA.CK.5914.01A	2	32582248	32661112	15	-0.0545	NEUTRAL	NA	1	BIRC6
TCGA.AG.4009.01A	2	32602649	32658675	12	-0.2128	NEUTRAL	NA	1	BIRC6
TCGA.AA.3967.01A	2	32602649	32743835	53	-0.346	NEUTRAL	NA	1	BIRC6
TCGA.G4.6303	2	32643527	69987383	13592	0.0145	NEUTRAL	NA	155	Too-Many
TCGA.AA.A01Q.01A	2	32666360	32678829	6	-0.4719	NEUTRAL	NA	1	BIRC6
TCGA.AA.A01Q.01A	2	32688237	37872949	274	0.2335	NEUTRAL	NA	18	"BIRC6,CDC42EP3,CEBPZ,CRIM1,EIF2AK2,FAM98A,FEZ2,GPATCH11,HEATR5B,LTBP1,NDUFAF7,PRKD3,QPCT,RASGRP3,STRN,SULT6B1,TTC27,VIT"
TCGA.AG.A00C.01A	2	32692989	37323282	220	-0.1637	NEUTRAL	NA	11	"BIRC6,CRIM1,FAM98A,FEZ2,GPATCH11,HEATR5B,LTBP1,RASGRP3,STRN,TTC27,VIT"
TCGA.AG.4009.01A	2	32694416	37872949	286	-0.0218	NEUTRAL	NA	18	"BIRC6,CDC42EP3,CEBPZ,CRIM1,EIF2AK2,FAM98A,FEZ2,GPATCH11,HEATR5B,LTBP1,NDUFAF7,PRKD3,QPCT,RASGRP3,STRN,SULT6B1,TTC27,VIT"
TCGA.AA.3967.01A	2	32749903	49247174	840	0.0206	NEUTRAL	NA	81	"ABCG5,ABCG8,ARHGEF33,ATL2,ATP6V1E2,BIRC6,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,CDC42EP3,CDKL4,CEBPZ,COX7A2L,CRIM1,CRIPT,CYP1B1,DHX57,DYNC2LI1,EIF2AK2,EML4,EPAS1,EPCAM,FAM98A,FBXO11,FEZ2,FOXN2,FSHR,GALM,GEMIN6,GPATCH11,GTF2A1L,HAAO,HEATR5B,HNRNPLL,KCNG3,KCNK12,LHCGR,LRPPRC,LTBP1,MAP4K3,MCFD2,MORN2,MSH2,MSH6,MTA3,NDUFAF7,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PPP1R21,PREPL,PRKCE,PRKD3,QPCT,RASGRP3,RHOQ,RMDN2,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SRBD1,SRSF7,STON1,STON1-GTF2A1L,STRN,SULT6B1,THADA,THUMPD2,TMEM178A,TMEM247,TTC27,TTC7A,VIT,ZFP36L2"
TCGA.CK.5914.01A	2	32855633	33173877	24	0.1975	NEUTRAL	NA	2	"LTBP1,TTC27"
TCGA.AA.3862.01A	2	32865290	36771492	95	-0.3579	NEUTRAL	NA	5	"CRIM1,FAM98A,LTBP1,RASGRP3,TTC27"
TCGA.AG.A026	2	33206508	33428306	103	-0.38	NEUTRAL	NA	1	LTBP1
TCGA.AG.A026	2	33428652	243048759	60583	0.03	NEUTRAL	NA	1032	Too-Many
TCGA.AG.3891.01A	2	33745571	33787704	13	0.2773	NEUTRAL	NA	1	RASGRP3
TCGA.CK.5914.01A	2	33768560	36605409	15	-0.1025	NEUTRAL	NA	3	"CRIM1,FAM98A,RASGRP3"
TCGA.AG.3891.01A	2	33809806	36787871	29	-0.3099	NEUTRAL	NA	3	"CRIM1,FAM98A,FEZ2"
TCGA.A6.2681	2	33828973	53051194	7622	-0.0446	NEUTRAL	NA	77	"ABCG5,ABCG8,ARHGEF33,ATL2,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,CDC42EP3,CDKL4,CEBPZ,COX7A2L,CRIM1,CRIPT,CYP1B1,DHX57,DYNC2LI1,EIF2AK2,EML4,EPAS1,EPCAM,FBXO11,FEZ2,FOXN2,FSHR,GALM,GEMIN6,GPATCH11,GTF2A1L,HAAO,HEATR5B,HNRNPLL,KCNG3,KCNK12,LHCGR,LRPPRC,MAP4K3,MCFD2,MORN2,MSH2,MSH6,MTA3,NDUFAF7,NRXN1,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PPP1R21,PREPL,PRKCE,PRKD3,QPCT,RHOQ,RMDN2,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SRBD1,SRSF7,STON1,STON1-GTF2A1L,STRN,SULT6B1,THADA,THUMPD2,TMEM178A,TMEM247,TTC7A,VIT,ZFP36L2"
TCGA.AA.3941	2	34061864	34280661	112	0.1766	NEUTRAL	NA	0	None
TCGA.AA.3982	2	34209677	35116153	372	-0.2891	NEUTRAL	NA	0	None
TCGA.AA.3941	2	34290967	35116153	346	-0.3519	NEUTRAL	NA	0	None
TCGA.AA.3844	2	34290967	36353864	792	-0.5039	NEUTRAL	NA	0	None
TCGA.AA.3811	2	34325188	36491003	832	-0.2805	NEUTRAL	NA	0	None
TCGA.AA.3556	2	34440087	238666913	58802	-0.0332	NEUTRAL	NA	979	Too-Many
TCGA.EI.7002	2	34741026	76554775	14608	-0.0271	NEUTRAL	NA	227	Too-Many
TCGA.T9.A92H	2	35075106	123763212	25354	0.0256	NEUTRAL	NA	444	Too-Many
TCGA.AA.3941	2	35123422	35248061	37	-0.2099	NEUTRAL	NA	0	None
TCGA.AA.3982	2	35123947	35247786	33	-0.1689	NEUTRAL	NA	0	None
TCGA.AA.3867	2	35289776	40841009	2302	0.1387	NEUTRAL	NA	29	"ARHGEF33,ATL2,CDC42EP3,CDKL4,CEBPZ,CRIM1,CYP1B1,DHX57,EIF2AK2,FEZ2,GALM,GEMIN6,GPATCH11,HEATR5B,HNRNPLL,MAP4K3,MORN2,NDUFAF7,PRKD3,QPCT,RMDN2,SLC8A1,SOS1,SRSF7,STRN,SULT6B1,THUMPD2,TMEM178A,VIT"
TCGA.AG.3890	2	35295077	243048759	59644	0.0817	NEUTRAL	NA	1029	Too-Many
TCGA.AA.3941	2	35573876	35769788	66	-0.2715	NEUTRAL	NA	0	None
TCGA.AA.3982	2	35579690	35769788	65	-0.32	NEUTRAL	NA	0	None
TCGA.AA.3941	2	35779297	36169466	172	-0.3229	NEUTRAL	NA	0	None
TCGA.AA.3982	2	35779297	36173246	173	-0.3176	NEUTRAL	NA	0	None
TCGA.AA.3982	2	36175699	36549965	176	-0.3474	NEUTRAL	NA	0	None
TCGA.AA.3941	2	36180122	36251326	32	-0.1126	NEUTRAL	NA	0	None
TCGA.AA.3941	2	36266809	36283087	13	-0.3066	NEUTRAL	NA	0	None
TCGA.AA.3941	2	36308841	36482201	75	-0.061	NEUTRAL	NA	0	None
TCGA.AA.3844	2	36354423	39927046	1449	-0.0527	NEUTRAL	NA	27	"ARHGEF33,ATL2,CDC42EP3,CDKL4,CEBPZ,CRIM1,CYP1B1,DHX57,EIF2AK2,FEZ2,GALM,GEMIN6,GPATCH11,HEATR5B,HNRNPLL,MAP4K3,MORN2,NDUFAF7,PRKD3,QPCT,RMDN2,SOS1,SRSF7,STRN,SULT6B1,TMEM178A,VIT"
TCGA.AA.3811	2	36491040	39962777	1404	0.1576	NEUTRAL	NA	27	"ARHGEF33,ATL2,CDC42EP3,CDKL4,CEBPZ,CRIM1,CYP1B1,DHX57,EIF2AK2,FEZ2,GALM,GEMIN6,GPATCH11,HEATR5B,HNRNPLL,MAP4K3,MORN2,NDUFAF7,PRKD3,QPCT,RMDN2,SOS1,SRSF7,STRN,SULT6B1,TMEM178A,VIT"
TCGA.AA.3941	2	36498264	38272812	838	0.1606	NEUTRAL	NA	14	"CDC42EP3,CEBPZ,CRIM1,EIF2AK2,FEZ2,GPATCH11,HEATR5B,NDUFAF7,PRKD3,QPCT,RMDN2,STRN,SULT6B1,VIT"
TCGA.AA.3850	2	36516662	36610781	52	0.04725	NEUTRAL	NA	1	CRIM1
TCGA.AA.3982	2	36551482	36612203	36	0.1858	NEUTRAL	NA	1	CRIM1
TCGA.AG.3611.01A	2	36583408	36764466	14	-0.483	NEUTRAL	NA	1	CRIM1
TCGA.DM.A28H	2	36595270	36903765	202	0.0988	NEUTRAL	NA	2	"CRIM1,FEZ2"
TCGA.AA.3982	2	36612333	36614614	12	-0.4927	NEUTRAL	NA	1	CRIM1
TCGA.AA.3982	2	36620952	36626483	10	0.1544	NEUTRAL	NA	1	CRIM1
TCGA.AA.3850	2	36620952	36724423	74	-0.07175	NEUTRAL	NA	1	CRIM1
TCGA.AA.3982	2	36657304	37061779	277	0.1494	NEUTRAL	NA	3	"CRIM1,FEZ2,VIT"
TCGA.AA.3850	2	36728018	36802330	44	0.28665	NEUTRAL	NA	2	"CRIM1,FEZ2"
TCGA.AG.3611.01A	2	36771492	37096650	26	-0.1805	NEUTRAL	NA	4	"CRIM1,FEZ2,STRN,VIT"
TCGA.AA.3862.01A	2	36774115	89265733	2854	0.2211	NEUTRAL	NA	281	Too-Many
TCGA.CK.5914.01A	2	36787871	36943438	6	-0.0264	NEUTRAL	NA	2	"FEZ2,VIT"
TCGA.AG.3891.01A	2	36805713	40655646	306	0.0061	NEUTRAL	NA	28	"ARHGEF33,ATL2,CDC42EP3,CDKL4,CEBPZ,CYP1B1,DHX57,EIF2AK2,FEZ2,GALM,GEMIN6,GPATCH11,HEATR5B,HNRNPLL,MAP4K3,MORN2,NDUFAF7,PRKD3,QPCT,RMDN2,SLC8A1,SOS1,SRSF7,STRN,SULT6B1,THUMPD2,TMEM178A,VIT"
TCGA.AA.3850	2	36809495	38483795	772	0.06545	NEUTRAL	NA	14	"CDC42EP3,CEBPZ,CYP1B1,EIF2AK2,FEZ2,GPATCH11,HEATR5B,NDUFAF7,PRKD3,QPCT,RMDN2,STRN,SULT6B1,VIT"
TCGA.DM.A28H	2	36908601	39754192	1064	0.0316	NEUTRAL	NA	24	"ARHGEF33,ATL2,CDC42EP3,CDKL4,CEBPZ,CYP1B1,DHX57,EIF2AK2,GALM,GEMIN6,GPATCH11,HEATR5B,HNRNPLL,MAP4K3,MORN2,NDUFAF7,PRKD3,QPCT,RMDN2,SOS1,SRSF7,STRN,SULT6B1,VIT"
TCGA.AG.A008.01A	2	36943438	47382264	607	0.1267	NEUTRAL	NA	61	"ABCG5,ABCG8,ARHGEF33,ATL2,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CAMKMT,CDC42EP3,CDKL4,CEBPZ,COX7A2L,CRIPT,CYP1B1,DHX57,DYNC2LI1,EIF2AK2,EML4,EPAS1,GALM,GEMIN6,GPATCH11,HAAO,HEATR5B,HNRNPLL,KCNG3,LRPPRC,MAP4K3,MCFD2,MORN2,MTA3,NDUFAF7,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PREPL,PRKCE,PRKD3,QPCT,RHOQ,RMDN2,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SRBD1,SRSF7,STRN,SULT6B1,THADA,THUMPD2,TMEM178A,TMEM247,TTC7A,VIT,ZFP36L2"
TCGA.AA.3982	2	37095793	37687519	160	0.1276	NEUTRAL	NA	9	"CEBPZ,EIF2AK2,GPATCH11,HEATR5B,NDUFAF7,PRKD3,QPCT,STRN,SULT6B1"
TCGA.AG.3611.01A	2	37105017	37152206	9	0.2611	NEUTRAL	NA	1	STRN
TCGA.CK.5914.01A	2	37143181	37268264	22	-0.0683	NEUTRAL	NA	2	"HEATR5B,STRN"
TCGA.AG.3909.01A	2	37152206	37319052	38	0.1049	NEUTRAL	NA	3	"GPATCH11,HEATR5B,STRN"
TCGA.AA.3509.01A	2	37152206	37414446	65	-0.4468	NEUTRAL	NA	5	"EIF2AK2,GPATCH11,HEATR5B,STRN,SULT6B1"
TCGA.AA.A010.01A	2	37152206	37440960	74	0.1607	NEUTRAL	NA	6	"CEBPZ,EIF2AK2,GPATCH11,HEATR5B,STRN,SULT6B1"
TCGA.AG.3611.01A	2	37193331	58449030	919	-0.1396	NEUTRAL	NA	97	"ABCG5,ABCG8,ACYP2,ARHGEF33,ASB3,ATL2,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf73,C2orf91,CALM2,CAMKMT,CCDC85A,CCDC88A,CDC42EP3,CDKL4,CEBPZ,CFAP36,CHAC2,CLHC1,COX7A2L,CRIPT,CYP1B1,DHX57,DYNC2LI1,EFEMP1,EIF2AK2,EML4,EML6,EPAS1,EPCAM,ERLEC1,FANCL,FBXO11,FOXN2,FSHR,GALM,GEMIN6,GPATCH11,GPR75,GPR75-ASB3,GTF2A1L,HAAO,HEATR5B,HNRNPLL,KCNG3,KCNK12,LHCGR,LRPPRC,MAP4K3,MCFD2,MORN2,MSH2,MSH6,MTA3,MTIF2,NDUFAF7,NRXN1,OXER1,PIGF,PKDCC,PLEKHH2,PNPT1,PPM1B,PPP1R21,PREPL,PRKCE,PRKD3,PSME4,QPCT,RHOQ,RMDN2,RPS27A,RTN4,SIX2,SIX3,SLC3A1,SLC8A1,SMEK2,SOCS5,SOS1,SPTBN1,SRBD1,SRSF7,STON1,STON1-GTF2A1L,STRN,SULT6B1,THADA,THUMPD2,TMEM178A,TMEM247,TSPYL6,TTC7A,VRK2,ZFP36L2"
TCGA.A6.3810.01A	2	37195688	37217741	4	-0.2116	NEUTRAL	NA	1	HEATR5B
TCGA.A6.3810.01A	2	37227729	47596657	684	0.2164	NEUTRAL	NA	61	"ABCG5,ABCG8,ARHGEF33,ATL2,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,CDC42EP3,CDKL4,CEBPZ,COX7A2L,CRIPT,CYP1B1,DHX57,DYNC2LI1,EIF2AK2,EML4,EPAS1,EPCAM,GALM,GEMIN6,GPATCH11,HAAO,HEATR5B,HNRNPLL,KCNG3,LRPPRC,MAP4K3,MCFD2,MORN2,MTA3,NDUFAF7,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PREPL,PRKCE,PRKD3,QPCT,RHOQ,RMDN2,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SRBD1,SRSF7,SULT6B1,THADA,THUMPD2,TMEM178A,TMEM247,TTC7A,ZFP36L2"
TCGA.DY.A1H8	2	37231707	243048759	58986	0	NEUTRAL	NA	1025	Too-Many
TCGA.AG.A01W.01A	2	37269035	37303778	13	0.2507	NEUTRAL	NA	1	HEATR5B
TCGA.CK.5914.01A	2	37299206	37323282	12	-0.1715	NEUTRAL	NA	2	"GPATCH11,HEATR5B"
TCGA.AA.A00N.01A	2	37306231	37353382	15	0.0077	NEUTRAL	NA	3	"EIF2AK2,GPATCH11,HEATR5B"
TCGA.AG.A01W.01A	2	37308231	37323236	7	-0.4649	NEUTRAL	NA	2	"GPATCH11,HEATR5B"
TCGA.AG.A01W.01A	2	37324464	37366798	18	0.2886	NEUTRAL	NA	2	"EIF2AK2,GPATCH11"
TCGA.AG.A00C.01A	2	37334369	37450262	33	0.2023	NEUTRAL	NA	3	"CEBPZ,EIF2AK2,SULT6B1"
TCGA.CK.5914.01A	2	37364045	37469706	35	-0.2551	NEUTRAL	NA	4	"CEBPZ,EIF2AK2,NDUFAF7,SULT6B1"
TCGA.AG.3909.01A	2	37365358	37368669	4	0.0183	NEUTRAL	NA	1	EIF2AK2
TCGA.AA.A00F.01A	2	37365624	37449476	23	0.347	NEUTRAL	NA	3	"CEBPZ,EIF2AK2,SULT6B1"
TCGA.AG.A01W.01A	2	37369954	37452987	9	-0.1968	NEUTRAL	NA	3	"CEBPZ,EIF2AK2,SULT6B1"
TCGA.AG.3909.01A	2	37373969	37450262	21	-0.4251	NEUTRAL	NA	3	"CEBPZ,EIF2AK2,SULT6B1"
TCGA.A6.3808.01A	2	37410516	37463203	21	-0.3583	NEUTRAL	NA	3	"CEBPZ,NDUFAF7,SULT6B1"
TCGA.AA.3509.01A	2	37415531	38156383	54	0.0724	NEUTRAL	NA	7	"CDC42EP3,CEBPZ,NDUFAF7,PRKD3,QPCT,RMDN2,SULT6B1"
TCGA.AA.3930.01A	2	37426801	47403514	618	0.0556	NEUTRAL	NA	56	"ABCG5,ABCG8,ARHGEF33,ATL2,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,CDC42EP3,CDKL4,CEBPZ,COX7A2L,CRIPT,CYP1B1,DHX57,DYNC2LI1,EML4,EPAS1,GALM,GEMIN6,HAAO,HNRNPLL,KCNG3,LRPPRC,MAP4K3,MCFD2,MORN2,MTA3,NDUFAF7,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PREPL,PRKCE,PRKD3,QPCT,RHOQ,RMDN2,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SRBD1,SRSF7,THADA,THUMPD2,TMEM178A,TMEM247,TTC7A,ZFP36L2"
TCGA.A6.6653	2	37431106	68088167	10951	0.0068	NEUTRAL	NA	124	Too-Many
TCGA.AA.A00F.01A	2	37450262	37872949	38	-0.0786	NEUTRAL	NA	5	"CDC42EP3,CEBPZ,NDUFAF7,PRKD3,QPCT"
TCGA.AA.A00N.01A	2	37450262	37872949	40	0.362	NEUTRAL	NA	5	"CDC42EP3,CEBPZ,NDUFAF7,PRKD3,QPCT"
TCGA.AG.A01W.01A	2	37453293	38683408	45	0.2928	NEUTRAL	NA	8	"ATL2,CDC42EP3,CEBPZ,CYP1B1,NDUFAF7,PRKD3,QPCT,RMDN2"
TCGA.AG.3909.01A	2	37454680	37872949	36	0.3105	NEUTRAL	NA	5	"CDC42EP3,CEBPZ,NDUFAF7,PRKD3,QPCT"
TCGA.AG.A00C.01A	2	37454680	37872949	37	-0.0614	NEUTRAL	NA	5	"CDC42EP3,CEBPZ,NDUFAF7,PRKD3,QPCT"
TCGA.AA.A010.01A	2	37464878	37520226	25	0.112	NEUTRAL	NA	2	"NDUFAF7,PRKD3"
TCGA.AA.3494	2	37475113	243048759	58898	0	NEUTRAL	NA	1020	Too-Many
TCGA.AA.3982	2	37688301	37818235	56	-0.2548	NEUTRAL	NA	0	None
TCGA.AA.3982	2	37818449	38135423	194	0.1077	NEUTRAL	NA	1	CDC42EP3
TCGA.AA.A01Q.01A	2	38177580	38297844	12	-0.2405	NEUTRAL	NA	2	"CYP1B1,RMDN2"
TCGA.AA.3982	2	38195113	38797373	286	0.1832	NEUTRAL	NA	4	"ATL2,CYP1B1,HNRNPLL,RMDN2"
TCGA.AA.3509.01A	2	38202304	38795285	29	-0.0289	NEUTRAL	NA	4	"ATL2,CYP1B1,HNRNPLL,RMDN2"
TCGA.AZ.4684.01A	2	38202304	38795285	29	-0.0265	NEUTRAL	NA	4	"ATL2,CYP1B1,HNRNPLL,RMDN2"
TCGA.AG.4009.01A	2	38216621	38956700	34	-0.2143	NEUTRAL	NA	5	"ATL2,CYP1B1,GALM,HNRNPLL,RMDN2"
TCGA.CK.5914.01A	2	38301502	38603208	16	0.1419	NEUTRAL	NA	2	"ATL2,CYP1B1"
TCGA.AG.3909.01A	2	38301502	38800320	19	0.2876	NEUTRAL	NA	3	"ATL2,CYP1B1,HNRNPLL"
TCGA.AA.A00N.01A	2	38301502	38960569	39	0.102	NEUTRAL	NA	4	"ATL2,CYP1B1,GALM,HNRNPLL"
TCGA.AA.A01Q.01A	2	38301502	38960569	34	0.2446	NEUTRAL	NA	4	"ATL2,CYP1B1,GALM,HNRNPLL"
TCGA.AA.A00F.01A	2	38302119	38960569	33	-0.037	NEUTRAL	NA	4	"ATL2,CYP1B1,GALM,HNRNPLL"
TCGA.AA.3941	2	38377590	38434908	50	0.0694	NEUTRAL	NA	0	None
TCGA.AG.3732	2	38442104	243048759	58274	0.0183	NEUTRAL	NA	1014	Too-Many
TCGA.AG.A00C.01A	2	38523597	38960569	29	-0.0501	NEUTRAL	NA	3	"ATL2,GALM,HNRNPLL"
TCGA.AA.A010.01A	2	38570398	38818625	14	-0.4528	NEUTRAL	NA	2	"ATL2,HNRNPLL"
TCGA.AG.A01W.01A	2	38746767	38816558	9	-0.4653	NEUTRAL	NA	1	HNRNPLL
TCGA.AG.3909.01A	2	38804548	38818625	5	-0.3756	NEUTRAL	NA	1	HNRNPLL
TCGA.AA.3850	2	38807440	39878442	267	0.21815	NEUTRAL	NA	10	"ARHGEF33,CDKL4,DHX57,GALM,GEMIN6,HNRNPLL,MAP4K3,MORN2,SOS1,SRSF7"
TCGA.AA.3982	2	38808034	39238394	100	0.2489	NEUTRAL	NA	8	"ARHGEF33,DHX57,GALM,GEMIN6,HNRNPLL,MORN2,SOS1,SRSF7"
TCGA.CK.5914.01A	2	38809007	38829917	7	0.2314	NEUTRAL	NA	1	HNRNPLL
TCGA.AZ.4684.01A	2	38809007	39198936	73	-0.2663	NEUTRAL	NA	7	"ARHGEF33,DHX57,GALM,GEMIN6,HNRNPLL,MORN2,SRSF7"
TCGA.AA.3509.01A	2	38809007	39239240	84	-0.1994	NEUTRAL	NA	8	"ARHGEF33,DHX57,GALM,GEMIN6,HNRNPLL,MORN2,SOS1,SRSF7"
TCGA.A6.3808.01A	2	38809007	44513123	381	-0.3381	NEUTRAL	NA	31	"ABCG5,ABCG8,ARHGEF33,C1GALT1C1L,C2orf91,CDKL4,COX7A2L,DHX57,DYNC2LI1,EML4,GALM,GEMIN6,HAAO,HNRNPLL,KCNG3,LRPPRC,MAP4K3,MORN2,MTA3,OXER1,PKDCC,PLEKHH2,PPM1B,SLC3A1,SLC8A1,SOS1,SRSF7,THADA,THUMPD2,TMEM178A,ZFP36L2"
TCGA.AG.A01W.01A	2	38859588	38918428	13	-0.4899	NEUTRAL	NA	1	GALM
TCGA.AG.A01W.01A	2	38923635	39087640	37	0.0937	NEUTRAL	NA	4	"DHX57,GALM,GEMIN6,SRSF7"
TCGA.AA.A00D.01A	2	38972211	39006083	9	0.2391	NEUTRAL	NA	2	"GEMIN6,SRSF7"
TCGA.AA.A00N.01A	2	38978303	39006083	2	-0.3167	NEUTRAL	NA	2	"GEMIN6,SRSF7"
TCGA.CK.5914.01A	2	38978303	39200805	49	0.326	NEUTRAL	NA	5	"ARHGEF33,DHX57,GEMIN6,MORN2,SRSF7"
TCGA.AA.A01Q.01A	2	38978303	42180072	110	0.1169	NEUTRAL	NA	12	"ARHGEF33,C2orf91,CDKL4,DHX57,GEMIN6,MAP4K3,MORN2,SLC8A1,SOS1,SRSF7,THUMPD2,TMEM178A"
TCGA.AA.A00F.01A	2	38978303	47357289	371	-0.0607	NEUTRAL	NA	45	"ABCG5,ABCG8,ARHGEF33,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CAMKMT,CDKL4,COX7A2L,CRIPT,DHX57,DYNC2LI1,EML4,EPAS1,GEMIN6,HAAO,KCNG3,LRPPRC,MAP4K3,MCFD2,MORN2,MTA3,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SRBD1,SRSF7,THADA,THUMPD2,TMEM178A,TMEM247,TTC7A,ZFP36L2"
TCGA.AG.4009.01A	2	39006083	39008620	2	-0.2254	NEUTRAL	NA	1	GEMIN6
TCGA.AG.3909.01A	2	39006083	43819395	198	0.2842	NEUTRAL	NA	20	"ARHGEF33,C2orf91,CDKL4,COX7A2L,DHX57,EML4,GEMIN6,HAAO,KCNG3,MAP4K3,MORN2,MTA3,OXER1,PKDCC,SLC8A1,SOS1,THADA,THUMPD2,TMEM178A,ZFP36L2"
TCGA.AA.A017.01A	2	39006083	128631391	3865	-0.0354	NEUTRAL	NA	440	Too-Many
TCGA.AG.4009.01A	2	39025120	40655646	103	0.0232	NEUTRAL	NA	9	"ARHGEF33,CDKL4,DHX57,MAP4K3,MORN2,SLC8A1,SOS1,THUMPD2,TMEM178A"
TCGA.AG.A00C.01A	2	39029850	42671045	132	-0.0917	NEUTRAL	NA	14	"ARHGEF33,C2orf91,CDKL4,COX7A2L,DHX57,EML4,KCNG3,MAP4K3,MORN2,PKDCC,SLC8A1,SOS1,THUMPD2,TMEM178A"
TCGA.AG.A01W.01A	2	39104659	55008913	687	0.0608	NEUTRAL	NA	67	"ABCG5,ABCG8,ACYP2,ARHGEF33,ASB3,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf73,C2orf91,CALM2,CAMKMT,CDKL4,CHAC2,COX7A2L,CRIPT,DYNC2LI1,EML4,EML6,EPAS1,EPCAM,ERLEC1,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,HAAO,KCNG3,KCNK12,LHCGR,LRPPRC,MAP4K3,MCFD2,MORN2,MSH2,MSH6,MTA3,NRXN1,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PPP1R21,PREPL,PRKCE,PSME4,RHOQ,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SPTBN1,SRBD1,STON1,STON1-GTF2A1L,THADA,THUMPD2,TMEM178A,TMEM247,TSPYL6,TTC7A,ZFP36L2"
TCGA.AA.3519	2	39105780	39129934	4	-0.3466	NEUTRAL	NA	1	MORN2
TCGA.AA.3519	2	39133066	41993583	1154	0.2393	NEUTRAL	NA	7	"ARHGEF33,CDKL4,MAP4K3,SLC8A1,SOS1,THUMPD2,TMEM178A"
TCGA.AA.A00N.01A	2	39148438	39164469	6	0.1568	NEUTRAL	NA	1	ARHGEF33
TCGA.AA.A010.01A	2	39233505	42275302	90	0.1597	NEUTRAL	NA	8	"C2orf91,CDKL4,MAP4K3,PKDCC,SLC8A1,SOS1,THUMPD2,TMEM178A"
TCGA.AA.3941	2	39261250	39834745	142	0.367	NEUTRAL	NA	3	"CDKL4,MAP4K3,SOS1"
TCGA.AA.3982	2	39261250	39914680	174	0.1248	NEUTRAL	NA	4	"CDKL4,MAP4K3,SOS1,TMEM178A"
TCGA.AA.3509.01A	2	39281716	47596657	432	0.0184	NEUTRAL	NA	42	"ABCG5,ABCG8,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,CDKL4,COX7A2L,CRIPT,DYNC2LI1,EML4,EPAS1,EPCAM,HAAO,KCNG3,LRPPRC,MAP4K3,MCFD2,MTA3,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SRBD1,THADA,THUMPD2,TMEM178A,TMEM247,TTC7A,ZFP36L2"
TCGA.AZ.4684.01A	2	39294717	39536545	32	-0.3341	NEUTRAL	NA	3	"CDKL4,MAP4K3,SOS1"
TCGA.CK.5914.01A	2	39431615	39507369	14	-0.4131	NEUTRAL	NA	2	"CDKL4,MAP4K3"
TCGA.AZ.4684.01A	2	39564003	50573792	519	0.0344	NEUTRAL	NA	52	"ABCG5,ABCG8,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,COX7A2L,CRIPT,DYNC2LI1,EML4,EPAS1,EPCAM,FBXO11,FOXN2,FSHR,GTF2A1L,HAAO,KCNG3,KCNK12,LHCGR,LRPPRC,MAP4K3,MCFD2,MSH2,MSH6,MTA3,NRXN1,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PPP1R21,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SRBD1,STON1,STON1-GTF2A1L,THADA,THUMPD2,TMEM178A,TMEM247,TTC7A,ZFP36L2"
TCGA.BM.6198	2	39777930	171788912	37127	0.05175	NEUTRAL	NA	580	Too-Many
TCGA.AA.3941	2	39842139	40103061	103	-0.0599	NEUTRAL	NA	2	"THUMPD2,TMEM178A"
TCGA.AA.3850	2	39930424	40111378	69	-0.02835	NEUTRAL	NA	2	"THUMPD2,TMEM178A"
TCGA.AA.3844	2	39932262	39978305	26	0.0041	NEUTRAL	NA	2	"THUMPD2,TMEM178A"
TCGA.AA.3982	2	39932262	40742482	420	-0.2678	NEUTRAL	NA	3	"SLC8A1,THUMPD2,TMEM178A"
TCGA.AA.3811	2	39963121	42006279	939	-0.2097	NEUTRAL	NA	2	"SLC8A1,THUMPD2"
TCGA.AA.3844	2	39979580	42006279	936	-0.4368	NEUTRAL	NA	2	"SLC8A1,THUMPD2"
TCGA.AA.3850	2	40141609	40628221	282	-0.26935	NEUTRAL	NA	1	SLC8A1
TCGA.AA.3941	2	40145914	40319529	84	-0.0869	NEUTRAL	NA	0	None
TCGA.AA.3941	2	40394139	40423453	29	0.0912	NEUTRAL	NA	1	SLC8A1
TCGA.AA.3941	2	40438488	40692203	142	-0.3142	NEUTRAL	NA	1	SLC8A1
TCGA.AA.3819	2	40458139	67717435	9524	0.0169	NEUTRAL	NA	104	Too-Many
TCGA.AA.A00N.01A	2	40655646	42719950	40	0.3152	NEUTRAL	NA	6	"C2orf91,COX7A2L,EML4,KCNG3,PKDCC,SLC8A1"
TCGA.AA.3867	2	40855554	45613578	1892	0.2254	NEUTRAL	NA	22	"ABCG5,ABCG8,C1GALT1C1L,C2orf91,CAMKMT,COX7A2L,DYNC2LI1,EML4,HAAO,KCNG3,LRPPRC,MTA3,OXER1,PKDCC,PLEKHH2,PPM1B,PREPL,SIX2,SIX3,SLC3A1,THADA,ZFP36L2"
TCGA.AA.3941	2	41023328	41611797	202	-0.5034	NEUTRAL	NA	0	None
TCGA.AA.3982	2	41037581	41615489	203	-0.3703	NEUTRAL	NA	0	None
TCGA.AA.3850	2	41715336	42074636	215	-0.20945	NEUTRAL	NA	0	None
TCGA.AA.3941	2	41717993	41835612	60	-0.4088	NEUTRAL	NA	0	None
TCGA.AA.3982	2	41717993	42063637	208	-0.27	NEUTRAL	NA	0	None
TCGA.AA.3941	2	41839185	41929335	59	0.1991	NEUTRAL	NA	0	None
TCGA.AA.3941	2	41942988	42000660	46	-0.1081	NEUTRAL	NA	0	None
TCGA.DM.A28H	2	41963622	133503783	25098	-0.0052	NEUTRAL	NA	462	Too-Many
TCGA.AA.3519	2	41993725	41999357	6	-0.3617	NEUTRAL	NA	0	None
TCGA.AA.3519	2	42000563	80078044	12867	0.2128	NEUTRAL	NA	204	Too-Many
TCGA.AA.3941	2	42006279	42072862	28	-0.0483	NEUTRAL	NA	0	None
TCGA.AA.3844	2	42010532	42074636	30	-0.1914	NEUTRAL	NA	0	None
TCGA.AA.3811	2	42010532	49393663	2858	0.2599	NEUTRAL	NA	47	"ABCG5,ABCG8,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,COX7A2L,CRIPT,DYNC2LI1,EML4,EPAS1,EPCAM,FBXO11,FOXN2,FSHR,GTF2A1L,HAAO,KCNG3,KCNK12,LHCGR,LRPPRC,MCFD2,MSH2,MSH6,MTA3,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PPP1R21,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SOCS5,SRBD1,STON1,STON1-GTF2A1L,THADA,TMEM247,TTC7A,ZFP36L2"
TCGA.AA.3982	2	42064728	42467633	205	0.2475	NEUTRAL	NA	3	"C2orf91,EML4,PKDCC"
TCGA.AA.3850	2	42075528	43195469	421	0.34335	NEUTRAL	NA	8	"C2orf91,COX7A2L,EML4,HAAO,KCNG3,MTA3,OXER1,PKDCC"
TCGA.AA.3844	2	42075528	43687541	594	0.1607	NEUTRAL	NA	10	"C2orf91,COX7A2L,EML4,HAAO,KCNG3,MTA3,OXER1,PKDCC,THADA,ZFP36L2"
TCGA.AG.3891.01A	2	42284695	42671045	27	-0.0782	NEUTRAL	NA	4	"COX7A2L,EML4,KCNG3,PKDCC"
TCGA.AA.A01Q.01A	2	42396666	43010867	34	0.2372	NEUTRAL	NA	6	"COX7A2L,EML4,HAAO,KCNG3,MTA3,OXER1"
TCGA.AG.4009.01A	2	42396666	43871791	83	-0.0117	NEUTRAL	NA	9	"COX7A2L,EML4,HAAO,KCNG3,MTA3,OXER1,PLEKHH2,THADA,ZFP36L2"
TCGA.AA.3982	2	42489590	45582318	1150	0.2189	NEUTRAL	NA	20	"ABCG5,ABCG8,C1GALT1C1L,CAMKMT,COX7A2L,DYNC2LI1,EML4,HAAO,KCNG3,LRPPRC,MTA3,OXER1,PLEKHH2,PPM1B,PREPL,SIX2,SIX3,SLC3A1,THADA,ZFP36L2"
TCGA.CK.5914.01A	2	42579737	42883323	11	-0.3265	NEUTRAL	NA	3	"COX7A2L,KCNG3,MTA3"
TCGA.AF.2689	2	42725872	70368922	9541	0.2721	NEUTRAL	NA	121	Too-Many
TCGA.AG.A00C.01A	2	42797509	42886855	7	0.347	NEUTRAL	NA	1	MTA3
TCGA.AG.3906.01A	2	42867293	43019538	19	-0.0434	NEUTRAL	NA	3	"HAAO,MTA3,OXER1"
TCGA.AA.A010.01A	2	42867293	43451438	26	0.2479	NEUTRAL	NA	4	"HAAO,MTA3,OXER1,ZFP36L2"
TCGA.AG.3891.01A	2	42867293	43452389	20	0.0636	NEUTRAL	NA	4	"HAAO,MTA3,OXER1,ZFP36L2"
TCGA.CK.5914.01A	2	42886855	43451438	23	0.2698	NEUTRAL	NA	4	"HAAO,MTA3,OXER1,ZFP36L2"
TCGA.AG.A00C.01A	2	42909511	43010420	11	-0.2826	NEUTRAL	NA	3	"HAAO,MTA3,OXER1"
TCGA.AG.A00C.01A	2	43010867	43520021	12	0.362	NEUTRAL	NA	3	"HAAO,THADA,ZFP36L2"
TCGA.AA.A01Q.01A	2	43015612	43905962	11	-0.2478	NEUTRAL	NA	5	"C1GALT1C1L,HAAO,PLEKHH2,THADA,ZFP36L2"
TCGA.EI.6508	2	43166001	43200106	16	-0.3711	NEUTRAL	NA	0	None
TCGA.EI.6508	2	43200147	77633145	11527	0	NEUTRAL	NA	191	Too-Many
TCGA.AA.3979	2	43300532	243048759	56345	-0.0046	NEUTRAL	NA	992	Too-Many
TCGA.CK.5914.01A	2	43452389	43519214	9	-0.3699	NEUTRAL	NA	2	"THADA,ZFP36L2"
TCGA.AA.3850	2	43542479	43587503	21	0.17385	NEUTRAL	NA	1	THADA
TCGA.AG.A00C.01A	2	43547536	43819395	29	-0.1605	NEUTRAL	NA	1	THADA
TCGA.AG.3906.01A	2	43571212	47136123	222	-0.0665	NEUTRAL	NA	23	"ABCG5,ABCG8,ATP6V1E2,C1GALT1C1L,CAMKMT,CRIPT,DYNC2LI1,EPAS1,LRPPRC,MCFD2,PIGF,PLEKHH2,PPM1B,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SOCS5,SRBD1,THADA,TMEM247"
TCGA.AA.3850	2	43588483	43782867	56	-0.14695	NEUTRAL	NA	1	THADA
TCGA.AG.3891.01A	2	43625059	47300791	240	-0.0546	NEUTRAL	NA	24	"ABCG5,ABCG8,ATP6V1E2,C1GALT1C1L,CAMKMT,CRIPT,DYNC2LI1,EPAS1,LRPPRC,MCFD2,PIGF,PLEKHH2,PPM1B,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SOCS5,SRBD1,THADA,TMEM247,TTC7A"
TCGA.AA.3844	2	43688495	43806917	34	-0.3319	NEUTRAL	NA	1	THADA
TCGA.AA.A00D.01A	2	43778898	43919601	7	0.3535	NEUTRAL	NA	3	"C1GALT1C1L,PLEKHH2,THADA"
TCGA.AA.3844	2	43807089	45216705	534	0.0243	NEUTRAL	NA	12	"ABCG5,ABCG8,C1GALT1C1L,CAMKMT,DYNC2LI1,LRPPRC,PLEKHH2,PPM1B,PREPL,SIX3,SLC3A1,THADA"
TCGA.CK.5914.01A	2	43813776	43933432	14	-0.3086	NEUTRAL	NA	3	"C1GALT1C1L,PLEKHH2,THADA"
TCGA.D5.6932	2	43856926	243048759	56247	-0.023	NEUTRAL	NA	990	Too-Many
TCGA.AA.3850	2	43883710	44024281	72	0.32655	NEUTRAL	NA	3	"C1GALT1C1L,DYNC2LI1,PLEKHH2"
TCGA.AG.3909.01A	2	43919601	43926749	5	-0.0343	NEUTRAL	NA	1	PLEKHH2
TCGA.AA.A01Q.01A	2	43919601	44981129	132	0.2646	NEUTRAL	NA	9	"ABCG5,ABCG8,CAMKMT,DYNC2LI1,LRPPRC,PLEKHH2,PPM1B,PREPL,SLC3A1"
TCGA.AG.4009.01A	2	43924263	46596934	159	-0.0115	NEUTRAL	NA	14	"ABCG5,ABCG8,CAMKMT,DYNC2LI1,EPAS1,LRPPRC,PLEKHH2,PPM1B,PREPL,PRKCE,SIX2,SIX3,SLC3A1,SRBD1"
TCGA.AG.A00C.01A	2	43926749	44566234	114	-0.1721	NEUTRAL	NA	8	"ABCG5,ABCG8,DYNC2LI1,LRPPRC,PLEKHH2,PPM1B,PREPL,SLC3A1"
TCGA.F4.6461	2	44007392	44255568	94	0.0127	NEUTRAL	NA	4	"ABCG5,ABCG8,DYNC2LI1,LRPPRC"
TCGA.AA.A010.01A	2	44010590	44047044	15	-0.1023	NEUTRAL	NA	2	"ABCG5,DYNC2LI1"
TCGA.AG.3909.01A	2	44022965	44041564	9	0.1491	NEUTRAL	NA	2	"ABCG5,DYNC2LI1"
TCGA.AA.3850	2	44037332	44546740	181	0.36825	NEUTRAL	NA	6	"ABCG5,ABCG8,LRPPRC,PPM1B,PREPL,SLC3A1"
TCGA.AG.3909.01A	2	44047044	44064925	7	-0.2776	NEUTRAL	NA	1	ABCG5
TCGA.AG.3909.01A	2	44065627	44190682	35	0.3638	NEUTRAL	NA	3	"ABCG5,ABCG8,LRPPRC"
TCGA.AA.A010.01A	2	44099073	46602792	115	0.3073	NEUTRAL	NA	11	"ABCG8,CAMKMT,EPAS1,LRPPRC,PPM1B,PREPL,PRKCE,SIX2,SIX3,SLC3A1,SRBD1"
TCGA.AG.3898	2	44109506	64136068	6719	0.2259	NEUTRAL	NA	77	"ACYP2,AHSA2,ASB3,ATP6V1E2,B3GNT2,BCL11A,C2orf61,C2orf73,C2orf74,CALM2,CAMKMT,CCDC85A,CCDC88A,CCT4,CFAP36,CHAC2,CLHC1,COMMD1,CRIPT,EFEMP1,EHBP1,EML6,EPAS1,EPCAM,ERLEC1,FAM161A,FANCL,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,KCNK12,KIAA1841,LHCGR,LRPPRC,MCFD2,MDH1,MSH2,MSH6,MTIF2,NRXN1,OTX1,PAPOLG,PEX13,PIGF,PNPT1,PPM1B,PPP1R21,PREPL,PRKCE,PSME4,PUS10,REL,RHOQ,RPS27A,RTN4,SIX2,SIX3,SLC3A1,SMEK2,SOCS5,SPTBN1,SRBD1,STON1,STON1-GTF2A1L,TMEM17,TMEM247,TSPYL6,TTC7A,UGP2,USP34,VPS54,VRK2,WDPCP,XPO1"
TCGA.AG.3909.01A	2	44200719	44209335	8	-0.1705	NEUTRAL	NA	1	LRPPRC
TCGA.AG.3909.01A	2	44428312	44566234	28	0.3387	NEUTRAL	NA	3	"PPM1B,PREPL,SLC3A1"
TCGA.AA.3850	2	44547130	45098282	183	-0.01795	NEUTRAL	NA	3	"CAMKMT,PREPL,SLC3A1"
TCGA.AA.A00N.01A	2	44565473	45235663	21	-0.4763	NEUTRAL	NA	4	"CAMKMT,PREPL,SIX2,SIX3"
TCGA.AG.A00C.01A	2	44569527	45616402	18	0.249	NEUTRAL	NA	5	"CAMKMT,PREPL,SIX2,SIX3,SRBD1"
TCGA.AG.3909.01A	2	44589100	44981129	9	0.1896	NEUTRAL	NA	1	CAMKMT
TCGA.AA.3850	2	45221946	45331903	60	0.25885	NEUTRAL	NA	1	SIX2
TCGA.AA.3844	2	45223570	45608827	195	0.08	NEUTRAL	NA	1	SIX2
TCGA.AA.3850	2	45336858	45391047	35	0.29115	NEUTRAL	NA	0	None
TCGA.AA.3850	2	45405988	45613578	95	0.29785	NEUTRAL	NA	0	None
TCGA.AA.3982	2	45590583	45857350	86	-0.2469	NEUTRAL	NA	1	SRBD1
TCGA.AA.3844	2	45613578	45753960	48	-0.3655	NEUTRAL	NA	1	SRBD1
TCGA.AA.3941	2	45613578	45780098	58	-0.4543	NEUTRAL	NA	1	SRBD1
TCGA.AG.3909.01A	2	45616402	46819586	45	0.2953	NEUTRAL	NA	7	"ATP6V1E2,EPAS1,PIGF,PRKCE,RHOQ,SRBD1,TMEM247"
TCGA.AA.A01Q.01A	2	45616402	46986340	56	0.1251	NEUTRAL	NA	9	"ATP6V1E2,CRIPT,EPAS1,PIGF,PRKCE,RHOQ,SOCS5,SRBD1,TMEM247"
TCGA.AA.3867	2	45616997	45785201	58	0.0248	NEUTRAL	NA	1	SRBD1
TCGA.AG.A00C.01A	2	45620057	47357289	77	-0.1652	NEUTRAL	NA	12	"ATP6V1E2,C2orf61,CRIPT,EPAS1,MCFD2,PIGF,PRKCE,RHOQ,SOCS5,SRBD1,TMEM247,TTC7A"
TCGA.AA.3850	2	45716266	45759026	17	-0.35525	NEUTRAL	NA	1	SRBD1
TCGA.AA.3844	2	45759026	48876512	1172	0.0834	NEUTRAL	NA	23	"ATP6V1E2,C2orf61,CALM2,CRIPT,EPAS1,EPCAM,FBXO11,FOXN2,GTF2A1L,KCNK12,MCFD2,MSH2,MSH6,PIGF,PPP1R21,PRKCE,RHOQ,SOCS5,SRBD1,STON1,STON1-GTF2A1L,TMEM247,TTC7A"
TCGA.AA.3850	2	45764418	46434582	367	0.25175	NEUTRAL	NA	2	"PRKCE,SRBD1"
TCGA.AA.3941	2	45785201	45853398	17	0.18	NEUTRAL	NA	1	SRBD1
TCGA.AA.3867	2	45786300	49269470	1357	0.2755	NEUTRAL	NA	25	"ATP6V1E2,C2orf61,CALM2,CRIPT,EPAS1,EPCAM,FBXO11,FOXN2,FSHR,GTF2A1L,KCNK12,LHCGR,MCFD2,MSH2,MSH6,PIGF,PPP1R21,PRKCE,RHOQ,SOCS5,SRBD1,STON1,STON1-GTF2A1L,TMEM247,TTC7A"
TCGA.A6.3808.01A	2	45832464	48896869	183	-0.3481	NEUTRAL	NA	23	"ATP6V1E2,C2orf61,CALM2,CRIPT,EPAS1,EPCAM,FBXO11,FOXN2,GTF2A1L,KCNK12,MCFD2,MSH2,MSH6,PIGF,PPP1R21,PRKCE,RHOQ,SOCS5,SRBD1,STON1,STON1-GTF2A1L,TMEM247,TTC7A"
TCGA.F4.6461	2	45841302	107175282	16344	0.0018	NEUTRAL	NA	317	Too-Many
TCGA.AA.3982	2	45861590	46317347	260	0.2161	NEUTRAL	NA	1	PRKCE
TCGA.AA.3982	2	46317539	46347791	24	-0.338	NEUTRAL	NA	1	PRKCE
TCGA.AA.3941	2	46320730	46347791	21	-0.2365	NEUTRAL	NA	1	PRKCE
TCGA.AA.3982	2	46352057	48316727	732	0.2588	NEUTRAL	NA	17	"ATP6V1E2,C2orf61,CALM2,CRIPT,EPAS1,EPCAM,FBXO11,KCNK12,MCFD2,MSH2,MSH6,PIGF,PRKCE,RHOQ,SOCS5,TMEM247,TTC7A"
TCGA.AA.3850	2	46455315	48869197	792	0.29755	NEUTRAL	NA	21	"ATP6V1E2,C2orf61,CALM2,CRIPT,EPAS1,EPCAM,FBXO11,FOXN2,GTF2A1L,KCNK12,MCFD2,MSH2,MSH6,PIGF,PPP1R21,RHOQ,SOCS5,STON1,STON1-GTF2A1L,TMEM247,TTC7A"
TCGA.AG.4009.01A	2	46611599	47183946	24	-0.1127	NEUTRAL	NA	9	"ATP6V1E2,CRIPT,EPAS1,MCFD2,PIGF,RHOQ,SOCS5,TMEM247,TTC7A"
TCGA.AA.A00N.01A	2	46711331	47183946	35	-0.0229	NEUTRAL	NA	8	"ATP6V1E2,CRIPT,MCFD2,PIGF,RHOQ,SOCS5,TMEM247,TTC7A"
TCGA.CM.5348	2	46729408	243048759	55063	-0.0034	NEUTRAL	NA	974	Too-Many
TCGA.AA.A00D.01A	2	46839330	47220532	19	-0.2263	NEUTRAL	NA	5	"CRIPT,MCFD2,PIGF,SOCS5,TTC7A"
TCGA.A6.2678	2	46921905	48192961	412	0.3719	NEUTRAL	NA	10	"C2orf61,CALM2,EPCAM,FBXO11,KCNK12,MCFD2,MSH2,MSH6,SOCS5,TTC7A"
TCGA.AG.3909.01A	2	46985672	47357289	27	0.3583	NEUTRAL	NA	4	"C2orf61,MCFD2,SOCS5,TTC7A"
TCGA.AA.A01Q.01A	2	47085174	47656844	51	-0.2876	NEUTRAL	NA	6	"C2orf61,CALM2,EPCAM,MCFD2,MSH2,TTC7A"
TCGA.AG.3906.01A	2	47177460	48033912	67	0.2889	NEUTRAL	NA	7	"C2orf61,CALM2,EPCAM,KCNK12,MSH2,MSH6,TTC7A"
TCGA.AA.A024.01A	2	47287859	96933021	2089	0.0112	NEUTRAL	NA	237	Too-Many
TCGA.CK.5914.01A	2	47314097	47672680	33	-0.4641	NEUTRAL	NA	4	"C2orf61,CALM2,EPCAM,MSH2"
TCGA.AG.3891.01A	2	47357021	48027279	43	0.3148	NEUTRAL	NA	6	"C2orf61,CALM2,EPCAM,KCNK12,MSH2,MSH6"
TCGA.AG.4009.01A	2	47357021	54044970	171	-0.091	NEUTRAL	NA	19	"ASB3,C2orf61,CALM2,CHAC2,EPCAM,ERLEC1,FBXO11,FOXN2,FSHR,GPR75-ASB3,GTF2A1L,KCNK12,LHCGR,MSH2,MSH6,NRXN1,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AH.6897	2	47382605	114311512	17294	0.2786	NEUTRAL	NA	354	Too-Many
TCGA.AA.3952	2	47552705	48659544	246	0.0344	NEUTRAL	NA	6	"EPCAM,FBXO11,FOXN2,KCNK12,MSH2,MSH6"
TCGA.AA.A010.01A	2	47596657	47709871	26	0.0037	NEUTRAL	NA	2	"EPCAM,MSH2"
TCGA.A6.3810.01A	2	47600585	47656844	16	-0.162	NEUTRAL	NA	2	"EPCAM,MSH2"
TCGA.AA.A00D.01A	2	47600920	48027708	31	-0.0596	NEUTRAL	NA	4	"EPCAM,KCNK12,MSH2,MSH6"
TCGA.AA.A00Q.01A	2	47606899	48036248	34	0.034	NEUTRAL	NA	5	"EPCAM,FBXO11,KCNK12,MSH2,MSH6"
TCGA.AA.3509.01A	2	47672680	50573792	111	-0.0724	NEUTRAL	NA	12	"FBXO11,FOXN2,FSHR,GTF2A1L,KCNK12,LHCGR,MSH2,MSH6,NRXN1,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AA.A01Q.01A	2	47672680	54839246	183	0.1429	NEUTRAL	NA	22	"ACYP2,ASB3,C2orf73,CHAC2,ERLEC1,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,KCNK12,LHCGR,MSH2,MSH6,NRXN1,PPP1R21,PSME4,SPTBN1,STON1,STON1-GTF2A1L,TSPYL6"
TCGA.AG.3909.01A	2	47672680	55436500	259	0.1404	NEUTRAL	NA	25	"ACYP2,ASB3,C2orf73,CHAC2,CLHC1,EML6,ERLEC1,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,KCNK12,LHCGR,MSH2,MSH6,NRXN1,PPP1R21,PSME4,RTN4,SPTBN1,STON1,STON1-GTF2A1L,TSPYL6"
TCGA.A6.3810.01A	2	47672680	61697710	618	0.2295	NEUTRAL	NA	44	"ACYP2,AHSA2,ASB3,BCL11A,C2orf73,C2orf74,CCDC85A,CCDC88A,CFAP36,CHAC2,CLHC1,EFEMP1,EML6,ERLEC1,FANCL,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,KCNK12,KIAA1841,LHCGR,MSH2,MSH6,MTIF2,NRXN1,PAPOLG,PEX13,PNPT1,PPP1R21,PSME4,PUS10,REL,RPS27A,RTN4,SMEK2,SPTBN1,STON1,STON1-GTF2A1L,TSPYL6,USP34,VRK2"
TCGA.AG.A00C.01A	2	47690148	47709871	8	-0.181	NEUTRAL	NA	1	MSH2
TCGA.AA.A00N.01A	2	47690148	48010341	12	0.0793	NEUTRAL	NA	3	"KCNK12,MSH2,MSH6"
TCGA.CK.5914.01A	2	47690148	49217639	98	0.2414	NEUTRAL	NA	11	"FBXO11,FOXN2,FSHR,GTF2A1L,KCNK12,LHCGR,MSH2,MSH6,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AA.A00F.01A	2	47690148	54044970	124	-0.0286	NEUTRAL	NA	16	"ASB3,CHAC2,ERLEC1,FBXO11,FOXN2,FSHR,GPR75-ASB3,GTF2A1L,KCNK12,LHCGR,MSH2,MSH6,NRXN1,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AG.A008.01A	2	47693780	130918701	3650	0.1193	NEUTRAL	NA	401	Too-Many
TCGA.AA.3930.01A	2	47698067	55155711	280	-0.0073	NEUTRAL	NA	23	"ACYP2,ASB3,C2orf73,CHAC2,EML6,ERLEC1,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,KCNK12,LHCGR,MSH2,MSH6,NRXN1,PPP1R21,PSME4,SPTBN1,STON1,STON1-GTF2A1L,TSPYL6"
TCGA.AG.A00C.01A	2	47739405	48033912	14	0.3124	NEUTRAL	NA	2	"KCNK12,MSH6"
TCGA.AG.3891.01A	2	48027708	55914714	337	-0.0873	NEUTRAL	NA	29	"ACYP2,ASB3,C2orf73,CCDC88A,CFAP36,CHAC2,CLHC1,EML6,ERLEC1,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,LHCGR,MSH6,MTIF2,NRXN1,PNPT1,PPP1R21,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,STON1,STON1-GTF2A1L,TSPYL6"
TCGA.AA.A00D.01A	2	48030539	48848332	51	-0.3868	NEUTRAL	NA	7	"FBXO11,FOXN2,GTF2A1L,MSH6,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AA.A00N.01A	2	48033912	54785899	199	0.2303	NEUTRAL	NA	20	"ACYP2,ASB3,C2orf73,CHAC2,ERLEC1,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,LHCGR,MSH6,NRXN1,PPP1R21,PSME4,SPTBN1,STON1,STON1-GTF2A1L,TSPYL6"
TCGA.AG.A00C.01A	2	48035257	48734356	35	-0.1216	NEUTRAL	NA	3	"FBXO11,FOXN2,PPP1R21"
TCGA.AG.3906.01A	2	48035257	55842534	306	-0.0122	NEUTRAL	NA	27	"ACYP2,ASB3,C2orf73,CCDC88A,CFAP36,CHAC2,CLHC1,EML6,ERLEC1,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,LHCGR,MTIF2,NRXN1,PPP1R21,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,STON1,STON1-GTF2A1L,TSPYL6"
TCGA.AA.A00Q.01A	2	48036702	50573792	77	-0.2747	NEUTRAL	NA	9	"FBXO11,FOXN2,FSHR,GTF2A1L,LHCGR,NRXN1,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AG.A016.01A	2	48045861	48678083	15	-0.1519	NEUTRAL	NA	3	"FBXO11,FOXN2,PPP1R21"
TCGA.A6.2678	2	48193499	70303217	7355	-0.0079	NEUTRAL	NA	85	"AAK1,ACTR2,ACYP2,AFTPH,AHSA2,ANTXR1,ANXA4,APLF,ARHGAP25,ASB3,ASPRV1,B3GNT2,BCL11A,BMP10,C1D,C2orf73,C2orf74,CCDC85A,CCDC88A,CCT4,CEP68,CFAP36,CHAC2,CLHC1,CNRIP1,COMMD1,EFEMP1,EHBP1,EML6,ERLEC1,ETAA1,FAM161A,FANCL,FBXO48,FOXN2,FSHR,GFPT1,GKN1,GKN2,GMCL1,GPR75,GPR75-ASB3,GTF2A1L,KIAA1841,LGALSL,LHCGR,MDH1,MEIS1,MTIF2,MXD1,NFU1,NRXN1,OTX1,PAPOLG,PELI1,PEX13,PLEK,PNO1,PNPT1,PPP1R21,PPP3R1,PROKR1,PSME4,PUS10,RAB1A,REL,RPS27A,RTN4,SERTAD2,SLC1A4,SMEK2,SNRNP27,SPRED2,SPTBN1,STON1,STON1-GTF2A1L,TMEM17,TSPYL6,UGP2,USP34,VPS54,VRK2,WDPCP,WDR92,XPO1"
TCGA.AA.3982	2	48318157	48400164	15	-0.3246	NEUTRAL	NA	0	None
TCGA.AA.3982	2	48404098	48876512	109	0.2144	NEUTRAL	NA	5	"FOXN2,GTF2A1L,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AG.A016.01A	2	48692006	50699406	54	-0.1416	NEUTRAL	NA	7	"FSHR,GTF2A1L,LHCGR,NRXN1,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AA.A010.01A	2	48692585	51152984	79	-0.0987	NEUTRAL	NA	7	"FSHR,GTF2A1L,LHCGR,NRXN1,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AG.A00C.01A	2	48737107	48848332	9	0.2921	NEUTRAL	NA	4	"GTF2A1L,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AG.A00C.01A	2	48869482	55870249	265	-0.086	NEUTRAL	NA	24	"ACYP2,ASB3,C2orf73,CCDC88A,CFAP36,CHAC2,CLHC1,EML6,ERLEC1,FSHR,GPR75,GPR75-ASB3,GTF2A1L,LHCGR,MTIF2,NRXN1,PNPT1,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,STON1-GTF2A1L,TSPYL6"
TCGA.AA.3941	2	48876512	48919596	9	0.0228	NEUTRAL	NA	3	"GTF2A1L,LHCGR,STON1-GTF2A1L"
TCGA.AA.3850	2	48876512	49000873	48	-0.35275	NEUTRAL	NA	3	"GTF2A1L,LHCGR,STON1-GTF2A1L"
TCGA.AA.3982	2	48899149	49201452	149	-0.1046	NEUTRAL	NA	4	"FSHR,GTF2A1L,LHCGR,STON1-GTF2A1L"
TCGA.AA.3844	2	48899149	49288059	202	-0.2093	NEUTRAL	NA	4	"FSHR,GTF2A1L,LHCGR,STON1-GTF2A1L"
TCGA.AA.3941	2	48924030	49202484	138	0.0369	NEUTRAL	NA	3	"FSHR,LHCGR,STON1-GTF2A1L"
TCGA.AA.3952	2	48966145	243048759	54347	0	NEUTRAL	NA	956	Too-Many
TCGA.AA.3850	2	49005547	49202584	105	-0.00015	NEUTRAL	NA	1	FSHR
TCGA.AA.3693	2	49191589	49217915	21	0.1307	NEUTRAL	NA	1	FSHR
TCGA.AA.3850	2	49227407	49332896	45	-0.23105	NEUTRAL	NA	1	FSHR
TCGA.AA.3867	2	49271416	49587133	117	-0.0219	NEUTRAL	NA	1	FSHR
TCGA.AA.3967.01A	2	49295317	53956548	38	-0.3653	NEUTRAL	NA	4	"ASB3,FSHR,GPR75-ASB3,NRXN1"
TCGA.AA.3864	2	49366046	58233463	3241	-0.1154	NEUTRAL	NA	24	"ACYP2,ASB3,C2orf73,CCDC85A,CCDC88A,CFAP36,CHAC2,CLHC1,EFEMP1,EML6,ERLEC1,FSHR,GPR75,GPR75-ASB3,MTIF2,NRXN1,PNPT1,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6,VRK2"
TCGA.AA.3811	2	49394734	53664317	1626	-0.3291	NEUTRAL	NA	1	NRXN1
TCGA.AA.3867	2	49587322	49610478	13	0.3672	NEUTRAL	NA	0	None
TCGA.AA.3867	2	49611718	53635142	1527	-0.1671	NEUTRAL	NA	1	NRXN1
TCGA.F4.6704	2	50531693	50537465	5	-0.4638	NEUTRAL	NA	1	NRXN1
TCGA.F4.6704	2	50537809	243048759	53650	0.0148	NEUTRAL	NA	953	Too-Many
TCGA.F5.6811.01A	2	50576495	50711643	11	0.0594	NEUTRAL	NA	1	NRXN1
TCGA.AA.A00D.01A	2	50722991	50848284	6	0.223	NEUTRAL	NA	1	NRXN1
TCGA.AG.A016.01A	2	50755700	63215019	491	-0.1363	NEUTRAL	NA	40	"ACYP2,AHSA2,ASB3,B3GNT2,BCL11A,C2orf73,C2orf74,CCDC85A,CCDC88A,CCT4,CFAP36,CHAC2,CLHC1,COMMD1,EFEMP1,EHBP1,EML6,ERLEC1,FAM161A,FANCL,GPR75,GPR75-ASB3,KIAA1841,MTIF2,NRXN1,PAPOLG,PEX13,PNPT1,PSME4,PUS10,REL,RPS27A,RTN4,SMEK2,SPTBN1,TMEM17,TSPYL6,USP34,VRK2,XPO1"
TCGA.AA.A00D.01A	2	50850424	55535897	157	-0.4459	NEUTRAL	NA	17	"ACYP2,ASB3,C2orf73,CCDC88A,CHAC2,CLHC1,EML6,ERLEC1,GPR75,GPR75-ASB3,MTIF2,NRXN1,PSME4,RPS27A,RTN4,SPTBN1,TSPYL6"
TCGA.F5.6811.01A	2	51106962	139144911	4398	0.0193	NEUTRAL	NA	430	Too-Many
TCGA.CM.4746	2	51324336	243048759	53423	-0.0103	NEUTRAL	NA	952	Too-Many
TCGA.5M.AAT4	2	52182628	52217218	11	0.0115	NEUTRAL	NA	0	None
TCGA.5M.AAT4	2	52219538	243048759	53177	0.223	NEUTRAL	NA	952	Too-Many
TCGA.AA.3866	2	52787948	57276154	1767	0.0262	NEUTRAL	NA	21	"ACYP2,ASB3,C2orf73,CCDC85A,CCDC88A,CFAP36,CHAC2,CLHC1,EFEMP1,EML6,ERLEC1,GPR75,GPR75-ASB3,MTIF2,PNPT1,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6"
TCGA.A6.2681	2	53058037	54347901	496	-0.0165	NEUTRAL	NA	7	"ACYP2,ASB3,CHAC2,ERLEC1,GPR75,GPR75-ASB3,PSME4"
TCGA.AA.3867	2	53644604	67624301	4312	0.1403	NEUTRAL	NA	54	"ACTR2,ACYP2,AFTPH,AHSA2,ASB3,B3GNT2,BCL11A,C2orf73,C2orf74,CCDC85A,CCDC88A,CCT4,CEP68,CFAP36,CHAC2,CLHC1,COMMD1,EFEMP1,EHBP1,EML6,ERLEC1,FAM161A,FANCL,GPR75,GPR75-ASB3,KIAA1841,LGALSL,MDH1,MEIS1,MTIF2,OTX1,PAPOLG,PELI1,PEX13,PNPT1,PSME4,PUS10,RAB1A,REL,RPS27A,RTN4,SERTAD2,SLC1A4,SMEK2,SPRED2,SPTBN1,TMEM17,TSPYL6,UGP2,USP34,VPS54,VRK2,WDPCP,XPO1"
TCGA.AA.3850	2	53652778	55116495	585	0.13925	NEUTRAL	NA	11	"ACYP2,ASB3,C2orf73,CHAC2,EML6,ERLEC1,GPR75,GPR75-ASB3,PSME4,SPTBN1,TSPYL6"
TCGA.AA.3982	2	53669132	54647698	334	0.1022	NEUTRAL	NA	9	"ACYP2,ASB3,C2orf73,CHAC2,ERLEC1,GPR75,GPR75-ASB3,PSME4,TSPYL6"
TCGA.AA.3941	2	53669132	56394463	978	0.2318	NEUTRAL	NA	20	"ACYP2,ASB3,C2orf73,CCDC88A,CFAP36,CHAC2,CLHC1,EFEMP1,EML6,ERLEC1,GPR75,GPR75-ASB3,MTIF2,PNPT1,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6"
TCGA.AA.3844	2	53669132	56432762	998	-0.0236	NEUTRAL	NA	21	"ACYP2,ASB3,C2orf73,CCDC85A,CCDC88A,CFAP36,CHAC2,CLHC1,EFEMP1,EML6,ERLEC1,GPR75,GPR75-ASB3,MTIF2,PNPT1,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6"
TCGA.AA.3811	2	53669132	56538459	1043	0.1645	NEUTRAL	NA	21	"ACYP2,ASB3,C2orf73,CCDC85A,CCDC88A,CFAP36,CHAC2,CLHC1,EFEMP1,EML6,ERLEC1,GPR75,GPR75-ASB3,MTIF2,PNPT1,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6"
TCGA.AA.A00Q.01A	2	53897593	69658986	626	-0.3394	NEUTRAL	NA	71	"ACTR2,ACYP2,AFTPH,AHSA2,ANTXR1,APLF,ARHGAP25,ASB3,B3GNT2,BCL11A,BMP10,C1D,C2orf73,C2orf74,CCDC85A,CCDC88A,CCT4,CEP68,CFAP36,CHAC2,CLHC1,CNRIP1,COMMD1,EFEMP1,EHBP1,EML6,ERLEC1,ETAA1,FAM161A,FANCL,FBXO48,GFPT1,GKN1,GKN2,GPR75,GPR75-ASB3,KIAA1841,LGALSL,MDH1,MEIS1,MTIF2,NFU1,OTX1,PAPOLG,PELI1,PEX13,PLEK,PNO1,PNPT1,PPP3R1,PROKR1,PSME4,PUS10,RAB1A,REL,RPS27A,RTN4,SERTAD2,SLC1A4,SMEK2,SPRED2,SPTBN1,TMEM17,TSPYL6,UGP2,USP34,VPS54,VRK2,WDPCP,WDR92,XPO1"
TCGA.CK.5914.01A	2	53977883	54102717	25	-0.0774	NEUTRAL	NA	6	"ASB3,CHAC2,ERLEC1,GPR75,GPR75-ASB3,PSME4"
TCGA.AA.3967.01A	2	53977883	61697710	405	0.0572	NEUTRAL	NA	32	"ACYP2,AHSA2,ASB3,BCL11A,C2orf73,C2orf74,CCDC85A,CCDC88A,CFAP36,CHAC2,CLHC1,EFEMP1,EML6,ERLEC1,FANCL,GPR75,GPR75-ASB3,KIAA1841,MTIF2,PAPOLG,PEX13,PNPT1,PSME4,PUS10,REL,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6,USP34,VRK2"
TCGA.AA.3509.01A	2	53994997	55813732	243	0.0258	NEUTRAL	NA	18	"ACYP2,ASB3,C2orf73,CCDC88A,CFAP36,CHAC2,CLHC1,EML6,ERLEC1,GPR75,GPR75-ASB3,MTIF2,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6"
TCGA.AZ.4684.01A	2	53994997	55813732	243	0.0747	NEUTRAL	NA	18	"ACYP2,ASB3,C2orf73,CCDC88A,CFAP36,CHAC2,CLHC1,EML6,ERLEC1,GPR75,GPR75-ASB3,MTIF2,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6"
TCGA.A6.3808.01A	2	53999015	55871735	252	-0.2151	NEUTRAL	NA	19	"ACYP2,ASB3,C2orf73,CCDC88A,CFAP36,CHAC2,CLHC1,EML6,ERLEC1,GPR75,GPR75-ASB3,MTIF2,PNPT1,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6"
TCGA.AA.A00F.01A	2	54080269	54112768	8	0.2952	NEUTRAL	NA	3	"GPR75,GPR75-ASB3,PSME4"
TCGA.AG.4009.01A	2	54101429	55844239	178	-0.0191	NEUTRAL	NA	13	"ACYP2,C2orf73,CCDC88A,CFAP36,CLHC1,EML6,MTIF2,PSME4,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6"
TCGA.AA.A00F.01A	2	54114358	55408689	92	-0.0967	NEUTRAL	NA	8	"ACYP2,C2orf73,CLHC1,EML6,PSME4,RTN4,SPTBN1,TSPYL6"
TCGA.CK.5914.01A	2	54131144	54952147	74	0.2625	NEUTRAL	NA	5	"ACYP2,C2orf73,PSME4,SPTBN1,TSPYL6"
TCGA.AG.3727	2	54308825	89124237	10273	0.0017	NEUTRAL	NA	198	Too-Many
TCGA.A6.2681	2	54535703	64312181	2789	-0.0039	NEUTRAL	NA	36	"AHSA2,B3GNT2,BCL11A,C2orf73,C2orf74,CCDC85A,CCDC88A,CCT4,CFAP36,CLHC1,COMMD1,EFEMP1,EHBP1,EML6,FAM161A,FANCL,KIAA1841,MDH1,MTIF2,OTX1,PAPOLG,PEX13,PNPT1,PUS10,REL,RPS27A,RTN4,SMEK2,SPTBN1,TMEM17,UGP2,USP34,VPS54,VRK2,WDPCP,XPO1"
TCGA.AA.3982	2	54658233	55958890	474	0.161	NEUTRAL	NA	10	"CCDC88A,CFAP36,CLHC1,EML6,MTIF2,PNPT1,RPS27A,RTN4,SMEK2,SPTBN1"
TCGA.AA.A01Q.01A	2	54843291	54871409	16	-0.2462	NEUTRAL	NA	1	SPTBN1
TCGA.AA.A01Q.01A	2	54872319	55920751	132	0.1666	NEUTRAL	NA	10	"CCDC88A,CFAP36,CLHC1,EML6,MTIF2,PNPT1,RPS27A,RTN4,SMEK2,SPTBN1"
TCGA.AG.A01W.01A	2	55044575	55372298	47	-0.0334	NEUTRAL	NA	2	"EML6,RTN4"
TCGA.AZ.6599	2	55121995	243048759	51988	-0.0003	NEUTRAL	NA	942	Too-Many
TCGA.AA.3850	2	55182949	55219798	22	-0.00135	NEUTRAL	NA	2	"EML6,RTN4"
TCGA.AA.3930.01A	2	55184920	55195756	9	-0.3529	NEUTRAL	NA	1	EML6
TCGA.AA.A02K.01A	2	55191071	97856862	2217	0.1346	NEUTRAL	NA	227	Too-Many
TCGA.AA.3930.01A	2	55197121	56569961	137	0.0601	NEUTRAL	NA	11	"CCDC85A,CCDC88A,CFAP36,CLHC1,EFEMP1,EML6,MTIF2,PNPT1,RPS27A,RTN4,SMEK2"
TCGA.D5.6533	2	55218804	243048759	51655	-0.0124	NEUTRAL	NA	941	Too-Many
TCGA.AA.A010.01A	2	55237138	55481753	33	-0.3167	NEUTRAL	NA	4	"CLHC1,MTIF2,RPS27A,RTN4"
TCGA.AA.A00N.01A	2	55252192	55276920	6	-0.4291	NEUTRAL	NA	1	RTN4
TCGA.AA.3850	2	55258703	56092611	216	0.26615	NEUTRAL	NA	8	"CCDC88A,CFAP36,CLHC1,MTIF2,PNPT1,RPS27A,RTN4,SMEK2"
TCGA.AG.A01W.01A	2	55408888	55951308	77	0.0114	NEUTRAL	NA	7	"CCDC88A,CFAP36,CLHC1,MTIF2,PNPT1,RPS27A,SMEK2"
TCGA.AA.A00F.01A	2	55433359	55526914	28	0.237	NEUTRAL	NA	4	"CCDC88A,CLHC1,MTIF2,RPS27A"
TCGA.CK.5914.01A	2	55467105	55815964	66	0.2961	NEUTRAL	NA	4	"CCDC88A,CFAP36,MTIF2,SMEK2"
TCGA.AG.3909.01A	2	55467105	55844239	64	0.1803	NEUTRAL	NA	4	"CCDC88A,CFAP36,MTIF2,SMEK2"
TCGA.AA.A00N.01A	2	55470087	55528281	16	-0.4773	NEUTRAL	NA	2	"CCDC88A,MTIF2"
TCGA.AA.A00F.01A	2	55528281	55844239	50	-0.1302	NEUTRAL	NA	3	"CCDC88A,CFAP36,SMEK2"
TCGA.AA.A00D.01A	2	55591031	64143967	271	-0.349	NEUTRAL	NA	29	"AHSA2,B3GNT2,BCL11A,C2orf74,CCDC85A,CCDC88A,CCT4,CFAP36,COMMD1,EFEMP1,EHBP1,FAM161A,FANCL,KIAA1841,MDH1,OTX1,PAPOLG,PEX13,PNPT1,PUS10,REL,SMEK2,TMEM17,UGP2,USP34,VPS54,VRK2,WDPCP,XPO1"
TCGA.AA.A00A.01A	2	55591031	111921663	1980	-0.3873	NEUTRAL	NA	300	Too-Many
TCGA.F5.6864	2	55804280	66089392	2956	0.1526	NEUTRAL	NA	36	"ACTR2,AFTPH,AHSA2,B3GNT2,BCL11A,C2orf74,CCDC85A,CCT4,CEP68,COMMD1,EFEMP1,EHBP1,FAM161A,FANCL,KIAA1841,LGALSL,MDH1,OTX1,PAPOLG,PELI1,PEX13,PNPT1,PUS10,RAB1A,REL,SERTAD2,SLC1A4,SMEK2,SPRED2,TMEM17,UGP2,USP34,VPS54,VRK2,WDPCP,XPO1"
TCGA.CK.5914.01A	2	55825513	55863365	5	-0.2337	NEUTRAL	NA	2	"PNPT1,SMEK2"
TCGA.AA.A00F.01A	2	55863365	55913455	22	0.2674	NEUTRAL	NA	1	PNPT1
TCGA.AA.A010.01A	2	55863365	56108718	30	-0.1405	NEUTRAL	NA	2	"EFEMP1,PNPT1"
TCGA.CK.5914.01A	2	55887259	55914714	13	-0.34	NEUTRAL	NA	1	PNPT1
TCGA.AG.3909.01A	2	55887259	61310241	115	-0.1253	NEUTRAL	NA	11	"BCL11A,CCDC85A,EFEMP1,FANCL,KIAA1841,PAPOLG,PEX13,PNPT1,PUS10,REL,VRK2"
TCGA.AG.3906.01A	2	55889030	61647833	192	-0.0292	NEUTRAL	NA	14	"AHSA2,BCL11A,C2orf74,CCDC85A,EFEMP1,FANCL,KIAA1841,PAPOLG,PEX13,PNPT1,PUS10,REL,USP34,VRK2"
TCGA.AG.A00C.01A	2	55912026	61258554	97	-0.0861	NEUTRAL	NA	10	"BCL11A,CCDC85A,EFEMP1,FANCL,PAPOLG,PEX13,PNPT1,PUS10,REL,VRK2"
TCGA.A6.3808.01A	2	55912026	61505250	164	-0.154	NEUTRAL	NA	14	"AHSA2,BCL11A,C2orf74,CCDC85A,EFEMP1,FANCL,KIAA1841,PAPOLG,PEX13,PNPT1,PUS10,REL,USP34,VRK2"
TCGA.AA.A00F.01A	2	55914714	70485260	459	-0.002	NEUTRAL	NA	63	"AAK1,ACTR2,AFTPH,AHSA2,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,B3GNT2,BCL11A,BMP10,C1D,C2orf42,C2orf74,CCDC85A,CCT4,CEP68,CNRIP1,COMMD1,EFEMP1,EHBP1,ETAA1,FAM161A,FANCL,FBXO48,GFPT1,GKN1,GKN2,GMCL1,KIAA1841,LGALSL,MDH1,MEIS1,MXD1,NFU1,OTX1,PAPOLG,PCBP1,PCYOX1,PELI1,PEX13,PLEK,PNO1,PNPT1,PPP3R1,PROKR1,PUS10,RAB1A,REL,SERTAD2,SLC1A4,SNRNP27,SPRED2,TIA1,TMEM17,UGP2,USP34,VPS54,VRK2,WDPCP,WDR92,XPO1"
TCGA.AA.3509.01A	2	55920751	56599430	15	0.3249	NEUTRAL	NA	3	"CCDC85A,EFEMP1,PNPT1"
TCGA.AG.3891.01A	2	55920751	60983522	49	-0.3794	NEUTRAL	NA	7	"BCL11A,CCDC85A,EFEMP1,FANCL,PAPOLG,PNPT1,VRK2"
TCGA.AA.3982	2	55959820	56413344	178	-0.1234	NEUTRAL	NA	2	"CCDC85A,EFEMP1"
TCGA.AA.A01Q.01A	2	56094157	59482265	37	-0.2258	NEUTRAL	NA	4	"CCDC85A,EFEMP1,FANCL,VRK2"
TCGA.AG.4009.01A	2	56094157	61760855	201	-0.1087	NEUTRAL	NA	14	"AHSA2,BCL11A,C2orf74,CCDC85A,EFEMP1,FANCL,KIAA1841,PAPOLG,PEX13,PUS10,REL,USP34,VRK2,XPO1"
TCGA.AA.3850	2	56108688	56167072	22	0.24955	NEUTRAL	NA	1	EFEMP1
TCGA.AA.3850	2	56167808	56258783	44	-0.31975	NEUTRAL	NA	0	None
TCGA.AA.3850	2	56261490	56394463	51	0.16035	NEUTRAL	NA	0	None
TCGA.AA.3941	2	56394878	56741671	143	-0.5123	NEUTRAL	NA	1	CCDC85A
TCGA.AA.3982	2	56430902	60098009	1209	-0.4431	NEUTRAL	NA	3	"CCDC85A,FANCL,VRK2"
TCGA.AA.3844	2	56433218	60093477	1192	-0.4678	NEUTRAL	NA	3	"CCDC85A,FANCL,VRK2"
TCGA.AA.3811	2	56538779	60097986	1151	-0.2202	NEUTRAL	NA	3	"CCDC85A,FANCL,VRK2"
TCGA.AA.3930.01A	2	56599430	58456883	29	-0.4024	NEUTRAL	NA	3	"CCDC85A,FANCL,VRK2"
TCGA.AA.3866	2	57306207	78378146	6381	0.0519	NEUTRAL	NA	130	Too-Many
TCGA.NH.A50V	2	57808809	243048759	50777	-0.0013	NEUTRAL	NA	931	Too-Many
TCGA.AA.3864	2	58238593	67340842	2570	0.0216	NEUTRAL	NA	33	"ACTR2,AFTPH,AHSA2,B3GNT2,BCL11A,C2orf74,CCT4,CEP68,COMMD1,EHBP1,FAM161A,FANCL,KIAA1841,LGALSL,MDH1,MEIS1,OTX1,PAPOLG,PELI1,PEX13,PUS10,RAB1A,REL,SERTAD2,SLC1A4,SPRED2,TMEM17,UGP2,USP34,VPS54,VRK2,WDPCP,XPO1"
TCGA.CK.5914.01A	2	58275640	61431351	123	0.0501	NEUTRAL	NA	11	"AHSA2,BCL11A,C2orf74,FANCL,KIAA1841,PAPOLG,PEX13,PUS10,REL,USP34,VRK2"
TCGA.DM.A28M.01A	2	58392822	114476683	3116	-0.1413	NEUTRAL	NA	320	Too-Many
TCGA.AZ.4684.01A	2	58425654	61411802	91	-0.2	NEUTRAL	NA	9	"AHSA2,BCL11A,C2orf74,FANCL,KIAA1841,PAPOLG,PEX13,PUS10,REL"
TCGA.AG.3611.01A	2	58453845	60773088	9	-0.5019	NEUTRAL	NA	2	"BCL11A,FANCL"
TCGA.AA.3509.01A	2	58453845	61574954	140	-0.1398	NEUTRAL	NA	10	"AHSA2,BCL11A,C2orf74,FANCL,KIAA1841,PAPOLG,PEX13,PUS10,REL,USP34"
TCGA.AA.3930.01A	2	58459122	72411176	784	0.0803	NEUTRAL	NA	78	"AAK1,ACTR2,ADD2,AFTPH,AHSA2,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,B3GNT2,BCL11A,BMP10,C1D,C2orf42,C2orf74,CCT4,CD207,CEP68,CLEC4F,CNRIP1,COMMD1,CYP26B1,DYSF,EHBP1,ETAA1,EXOC6B,FAM136A,FAM161A,FANCL,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,KIAA1841,LGALSL,MCEE,MDH1,MEIS1,MPHOSPH10,MXD1,NAGK,NFU1,OTX1,PAIP2B,PAPOLG,PCBP1,PCYOX1,PELI1,PEX13,PLEK,PNO1,PPP3R1,PROKR1,PUS10,RAB1A,REL,SERTAD2,SLC1A4,SNRNP27,SNRPG,SPRED2,TEX261,TGFA,TIA1,TMEM17,UGP2,USP34,VAX2,VPS54,WDPCP,WDR92,XPO1,ZNF638"
TCGA.EI.6511	2	58887239	243048759	50782	-0.0044	NEUTRAL	NA	929	Too-Many
TCGA.AA.3850	2	60081631	60095667	7	-0.18905	NEUTRAL	NA	0	None
TCGA.AA.3941	2	60093585	60133564	30	0.3118	NEUTRAL	NA	0	None
TCGA.AA.3844	2	60093585	60409378	148	-0.1259	NEUTRAL	NA	0	None
TCGA.AA.3850	2	60097986	60107054	8	0.27865	NEUTRAL	NA	0	None
TCGA.AA.3811	2	60098009	66074231	1515	0.2517	NEUTRAL	NA	30	"ACTR2,AFTPH,AHSA2,B3GNT2,BCL11A,C2orf74,CCT4,CEP68,COMMD1,EHBP1,FAM161A,KIAA1841,LGALSL,MDH1,OTX1,PAPOLG,PELI1,PEX13,PUS10,RAB1A,REL,SERTAD2,SLC1A4,SPRED2,TMEM17,UGP2,USP34,VPS54,WDPCP,XPO1"
TCGA.AA.3982	2	60098315	60484908	160	-0.1239	NEUTRAL	NA	0	None
TCGA.AA.3850	2	60114795	60133564	11	-0.07355	NEUTRAL	NA	0	None
TCGA.AA.3850	2	60135995	60187702	26	-0.41805	NEUTRAL	NA	0	None
TCGA.AA.3941	2	60135995	60191296	27	-0.2536	NEUTRAL	NA	0	None
TCGA.AA.3850	2	60191296	60345019	70	0.11735	NEUTRAL	NA	0	None
TCGA.AA.3941	2	60195215	60309905	55	0.2416	NEUTRAL	NA	0	None
TCGA.AA.3941	2	60309951	60486246	60	-0.3011	NEUTRAL	NA	0	None
TCGA.AA.3850	2	60352392	62727901	525	0.32645	NEUTRAL	NA	15	"AHSA2,B3GNT2,BCL11A,C2orf74,CCT4,COMMD1,FAM161A,KIAA1841,PAPOLG,PEX13,PUS10,REL,TMEM17,USP34,XPO1"
TCGA.AA.3844	2	60440198	65976243	1322	0.0515	NEUTRAL	NA	30	"ACTR2,AFTPH,AHSA2,B3GNT2,BCL11A,C2orf74,CCT4,CEP68,COMMD1,EHBP1,FAM161A,KIAA1841,LGALSL,MDH1,OTX1,PAPOLG,PELI1,PEX13,PUS10,RAB1A,REL,SERTAD2,SLC1A4,SPRED2,TMEM17,UGP2,USP34,VPS54,WDPCP,XPO1"
TCGA.AA.3982	2	60485085	65860797	1247	0.1937	NEUTRAL	NA	30	"ACTR2,AFTPH,AHSA2,B3GNT2,BCL11A,C2orf74,CCT4,CEP68,COMMD1,EHBP1,FAM161A,KIAA1841,LGALSL,MDH1,OTX1,PAPOLG,PELI1,PEX13,PUS10,RAB1A,REL,SERTAD2,SLC1A4,SPRED2,TMEM17,UGP2,USP34,VPS54,WDPCP,XPO1"
TCGA.AA.3941	2	60490321	64394416	730	0.3518	NEUTRAL	NA	22	"AHSA2,B3GNT2,BCL11A,C2orf74,CCT4,COMMD1,EHBP1,FAM161A,KIAA1841,MDH1,OTX1,PAPOLG,PELI1,PEX13,PUS10,REL,TMEM17,UGP2,USP34,VPS54,WDPCP,XPO1"
TCGA.AG.A01W.01A	2	60533156	61346587	111	-0.0595	NEUTRAL	NA	6	"BCL11A,KIAA1841,PAPOLG,PEX13,PUS10,REL"
TCGA.AA.A01Q.01A	2	60679651	71209024	484	0.1565	NEUTRAL	NA	68	"AAK1,ACTR2,ADD2,AFTPH,AHSA2,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,B3GNT2,BCL11A,BMP10,C1D,C2orf42,C2orf74,CCT4,CD207,CEP68,CLEC4F,CNRIP1,COMMD1,EHBP1,ETAA1,FAM136A,FAM161A,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,KIAA1841,LGALSL,MDH1,MEIS1,MXD1,NFU1,OTX1,PAPOLG,PCBP1,PCYOX1,PELI1,PEX13,PLEK,PNO1,PPP3R1,PROKR1,PUS10,RAB1A,REL,SERTAD2,SLC1A4,SNRNP27,SNRPG,SPRED2,TGFA,TIA1,TMEM17,UGP2,USP34,VAX2,VPS54,WDPCP,WDR92,XPO1"
TCGA.AG.3611.01A	2	60780322	97026327	1297	-0.1463	NEUTRAL	NA	201	Too-Many
TCGA.AA.A010.01A	2	60983522	61024150	22	0.2037	NEUTRAL	NA	1	PAPOLG
TCGA.AA.A00N.01A	2	60983522	61384976	73	0.0547	NEUTRAL	NA	6	"C2orf74,KIAA1841,PAPOLG,PEX13,PUS10,REL"
TCGA.AG.3891.01A	2	60987247	62728312	181	0.1235	NEUTRAL	NA	14	"AHSA2,B3GNT2,C2orf74,CCT4,COMMD1,FAM161A,KIAA1841,PAPOLG,PEX13,PUS10,REL,TMEM17,USP34,XPO1"
TCGA.CM.6165.01A	2	61245256	88427404	1568	0.016	NEUTRAL	NA	173	Too-Many
TCGA.AG.3909.01A	2	61315261	62066517	107	0.2432	NEUTRAL	NA	6	"AHSA2,C2orf74,FAM161A,KIAA1841,USP34,XPO1"
TCGA.AG.A00C.01A	2	61319557	61389989	11	-0.0159	NEUTRAL	NA	2	"C2orf74,KIAA1841"
TCGA.AA.A010.01A	2	61324787	61384976	12	-0.0599	NEUTRAL	NA	2	"C2orf74,KIAA1841"
TCGA.AG.A01W.01A	2	61365484	61486346	28	0.1261	NEUTRAL	NA	3	"AHSA2,C2orf74,USP34"
TCGA.AZ.4684.01A	2	61412586	61575839	53	0.1752	NEUTRAL	NA	2	"AHSA2,USP34"
TCGA.AA.A00N.01A	2	61419979	61435995	6	-0.3525	NEUTRAL	NA	1	USP34
TCGA.AG.A00C.01A	2	61430226	61647833	58	-0.0839	NEUTRAL	NA	1	USP34
TCGA.AA.A010.01A	2	61448590	61647833	50	0.3527	NEUTRAL	NA	1	USP34
TCGA.AG.A01W.01A	2	61559463	62583030	44	-0.2362	NEUTRAL	NA	6	"B3GNT2,CCT4,COMMD1,FAM161A,USP34,XPO1"
TCGA.AZ.4684.01A	2	61576306	62449329	59	-0.4428	NEUTRAL	NA	6	"B3GNT2,CCT4,COMMD1,FAM161A,USP34,XPO1"
TCGA.AA.A00N.01A	2	61605441	61697710	8	0.2013	NEUTRAL	NA	1	USP34
TCGA.CK.5914.01A	2	61607256	63101464	69	-0.0685	NEUTRAL	NA	8	"B3GNT2,CCT4,COMMD1,EHBP1,FAM161A,TMEM17,USP34,XPO1"
TCGA.DC.6154	2	61675678	243048759	49803	0.3614	NEUTRAL	NA	921	Too-Many
TCGA.A6.3810.01A	2	61705928	62112080	42	-0.0688	NEUTRAL	NA	3	"CCT4,FAM161A,XPO1"
TCGA.AG.A00C.01A	2	61705928	62112080	42	0.3211	NEUTRAL	NA	3	"CCT4,FAM161A,XPO1"
TCGA.AA.3861.01A	2	61722548	89265928	1484	0.0859	NEUTRAL	NA	172	Too-Many
TCGA.AG.4009.01A	2	62053538	62362935	22	0.2348	NEUTRAL	NA	3	"CCT4,COMMD1,FAM161A"
TCGA.AA.A010.01A	2	62053538	64335309	126	0.303	NEUTRAL	NA	12	"B3GNT2,CCT4,COMMD1,EHBP1,FAM161A,MDH1,OTX1,PELI1,TMEM17,UGP2,VPS54,WDPCP"
TCGA.AG.3906.01A	2	62053538	64335309	118	-0.1347	NEUTRAL	NA	12	"B3GNT2,CCT4,COMMD1,EHBP1,FAM161A,MDH1,OTX1,PELI1,TMEM17,UGP2,VPS54,WDPCP"
TCGA.AA.3967.01A	2	62080953	74651965	794	0.017	NEUTRAL	NA	94	"AAK1,ACTG2,ACTR2,ADD2,AFTPH,ALMS1,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,B3GNT2,BMP10,BOLA3,C1D,C2orf42,C2orf78,C2orf81,CCT4,CCT7,CD207,CEP68,CLEC4F,CNRIP1,COMMD1,CYP26B1,DCTN1,DGUOK,DUSP11,DYSF,EGR4,EHBP1,EMX1,ETAA1,EXOC6B,FAM136A,FAM161A,FBXO41,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,LGALSL,MCEE,MDH1,MEIS1,MOB1A,MPHOSPH10,MTHFD2,MXD1,NAGK,NAT8,NAT8B,NFU1,NOTO,OTX1,PAIP2B,PCBP1,PCYOX1,PELI1,PLEK,PNO1,PPP3R1,PRADC1,PROKR1,RAB11FIP5,RAB1A,SERTAD2,SFXN5,SLC1A4,SLC4A5,SMYD5,SNRNP27,SNRPG,SPR,SPRED2,STAMBP,TET3,TEX261,TGFA,TIA1,TMEM17,TPRKB,UGP2,VAX2,VPS54,WDPCP,WDR54,WDR92,ZNF638"
TCGA.A6.3810.01A	2	62115479	74328511	769	0.2371	NEUTRAL	NA	86	"AAK1,ACTG2,ACTR2,ADD2,AFTPH,ALMS1,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,B3GNT2,BMP10,C1D,C2orf42,C2orf78,CCT4,CCT7,CD207,CEP68,CLEC4F,CNRIP1,COMMD1,CYP26B1,DGUOK,DUSP11,DYSF,EGR4,EHBP1,EMX1,ETAA1,EXOC6B,FAM136A,FBXO41,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,LGALSL,MCEE,MDH1,MEIS1,MPHOSPH10,MXD1,NAGK,NAT8,NAT8B,NFU1,NOTO,OTX1,PAIP2B,PCBP1,PCYOX1,PELI1,PLEK,PNO1,PPP3R1,PRADC1,PROKR1,RAB11FIP5,RAB1A,SERTAD2,SFXN5,SLC1A4,SMYD5,SNRNP27,SNRPG,SPR,SPRED2,STAMBP,TET3,TEX261,TGFA,TIA1,TMEM17,TPRKB,UGP2,VAX2,VPS54,WDPCP,WDR92,ZNF638"
TCGA.AG.3909.01A	2	62132786	63223741	28	-0.173	NEUTRAL	NA	4	"B3GNT2,COMMD1,EHBP1,TMEM17"
TCGA.AG.A00C.01A	2	62132786	65316026	129	-0.0853	NEUTRAL	NA	16	"AFTPH,B3GNT2,CEP68,COMMD1,EHBP1,LGALSL,MDH1,OTX1,PELI1,RAB1A,SERTAD2,SLC1A4,TMEM17,UGP2,VPS54,WDPCP"
TCGA.AG.4009.01A	2	62449329	63223741	25	-0.0834	NEUTRAL	NA	3	"B3GNT2,EHBP1,TMEM17"
TCGA.AA.3509.01A	2	62449329	109085389	2466	0.0016	NEUTRAL	NA	263	Too-Many
TCGA.AG.A01W.01A	2	62586622	63687449	57	0.3466	NEUTRAL	NA	4	"EHBP1,OTX1,TMEM17,WDPCP"
TCGA.AZ.4684.01A	2	62728312	75874178	957	0.0551	NEUTRAL	NA	112	Too-Many
TCGA.AA.3850	2	62729296	64413220	251	-0.03905	NEUTRAL	NA	8	"EHBP1,MDH1,OTX1,PELI1,TMEM17,UGP2,VPS54,WDPCP"
TCGA.AG.3891.01A	2	62729555	64335309	94	-0.175	NEUTRAL	NA	8	"EHBP1,MDH1,OTX1,PELI1,TMEM17,UGP2,VPS54,WDPCP"
TCGA.AA.A00N.01A	2	62974507	63101464	9	0.2823	NEUTRAL	NA	1	EHBP1
TCGA.AG.A016.01A	2	63217823	63816083	29	0.186	NEUTRAL	NA	4	"EHBP1,MDH1,OTX1,WDPCP"
TCGA.A6.3808.01A	2	63264620	85628248	1142	0.1541	NEUTRAL	NA	129	Too-Many
TCGA.AG.3909.01A	2	63348979	63719935	18	0.2735	NEUTRAL	NA	1	WDPCP
TCGA.AG.4009.01A	2	63348979	64335309	64	-0.0262	NEUTRAL	NA	5	"MDH1,PELI1,UGP2,VPS54,WDPCP"
TCGA.AG.4021	2	63514650	243048759	49550	0.0098	NEUTRAL	NA	912	Too-Many
TCGA.DM.A28F	2	63530568	92285929	7521	-0.0111	NEUTRAL	NA	164	Too-Many
TCGA.F4.6806	2	63537595	243048759	49342	-0.0139	NEUTRAL	NA	912	Too-Many
TCGA.CK.5914.01A	2	63816404	64117173	19	-0.1872	NEUTRAL	NA	2	"MDH1,UGP2"
TCGA.AG.3909.01A	2	63821575	63833029	7	0.0885	NEUTRAL	NA	1	MDH1
TCGA.AG.A016.01A	2	63821575	64118207	18	-0.1218	NEUTRAL	NA	2	"MDH1,UGP2"
TCGA.AA.A00N.01A	2	63824496	64111042	11	-0.429	NEUTRAL	NA	2	"MDH1,UGP2"
TCGA.AG.A01W.01A	2	63922788	63970671	9	-0.189	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	63971731	64716547	41	0.2924	NEUTRAL	NA	4	"LGALSL,PELI1,UGP2,VPS54"
TCGA.AG.3909.01A	2	64109560	65243527	52	0.1972	NEUTRAL	NA	7	"AFTPH,LGALSL,PELI1,SERTAD2,SLC1A4,UGP2,VPS54"
TCGA.AG.A016.01A	2	64120512	64148302	10	0.3359	NEUTRAL	NA	1	VPS54
TCGA.AG.A016.01A	2	64160850	71801300	427	-0.1333	NEUTRAL	NA	55	"AAK1,ACTR2,ADD2,AFTPH,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,BMP10,C1D,C2orf42,CD207,CEP68,CLEC4F,CNRIP1,DYSF,ETAA1,FAM136A,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,LGALSL,MCEE,MEIS1,MPHOSPH10,MXD1,NAGK,NFU1,PAIP2B,PCBP1,PCYOX1,PELI1,PLEK,PNO1,PPP3R1,PROKR1,RAB1A,SERTAD2,SLC1A4,SNRNP27,SNRPG,SPRED2,TEX261,TGFA,TIA1,VAX2,VPS54,WDR92,ZNF638"
TCGA.AA.A00D.01A	2	64331823	65659009	43	-0.4424	NEUTRAL	NA	9	"ACTR2,AFTPH,CEP68,LGALSL,PELI1,RAB1A,SERTAD2,SLC1A4,SPRED2"
TCGA.AA.3850	2	64414164	65877730	515	0.31835	NEUTRAL	NA	8	"ACTR2,AFTPH,CEP68,LGALSL,RAB1A,SERTAD2,SLC1A4,SPRED2"
TCGA.A6.2681	2	64543876	186625496	32707	-0.0091	NEUTRAL	NA	553	Too-Many
TCGA.AA.A00N.01A	2	64778562	65540615	42	0.0418	NEUTRAL	NA	7	"ACTR2,AFTPH,CEP68,RAB1A,SERTAD2,SLC1A4,SPRED2"
TCGA.AG.4009.01A	2	64778562	65543817	41	-0.0838	NEUTRAL	NA	7	"ACTR2,AFTPH,CEP68,RAB1A,SERTAD2,SLC1A4,SPRED2"
TCGA.AG.3906.01A	2	64778562	69556804	161	-0.057	NEUTRAL	NA	24	"ACTR2,AFTPH,ANTXR1,APLF,ARHGAP25,BMP10,C1D,CEP68,CNRIP1,ETAA1,FBXO48,GFPT1,GKN1,GKN2,MEIS1,PLEK,PNO1,PPP3R1,PROKR1,RAB1A,SERTAD2,SLC1A4,SPRED2,WDR92"
TCGA.AG.3891.01A	2	64778562	70187822	241	-0.0211	NEUTRAL	NA	31	"AAK1,ACTR2,AFTPH,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,BMP10,C1D,CEP68,CNRIP1,ETAA1,FBXO48,GFPT1,GKN1,GKN2,GMCL1,MEIS1,MXD1,NFU1,PLEK,PNO1,PPP3R1,PROKR1,RAB1A,SERTAD2,SLC1A4,SNRNP27,SPRED2,WDR92"
TCGA.AG.3898	2	65007899	112462954	11201	-0.0033	NEUTRAL	NA	267	Too-Many
TCGA.AG.A01W.01A	2	65070271	67478078	50	-0.0563	NEUTRAL	NA	6	"ACTR2,CEP68,MEIS1,RAB1A,SLC1A4,SPRED2"
TCGA.AA.A010.01A	2	65243527	70520667	275	0.2211	NEUTRAL	NA	34	"AAK1,ACTR2,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,BMP10,C1D,C2orf42,CEP68,CNRIP1,ETAA1,FBXO48,GFPT1,GKN1,GKN2,GMCL1,MEIS1,MXD1,NFU1,PCBP1,PCYOX1,PLEK,PNO1,PPP3R1,PROKR1,RAB1A,SLC1A4,SNRNP27,SNRPG,SPRED2,TIA1,WDR92"
TCGA.AG.3909.01A	2	65301364	65540615	18	0.0231	NEUTRAL	NA	4	"ACTR2,CEP68,RAB1A,SPRED2"
TCGA.AG.A00C.01A	2	65469120	65540615	9	0.0782	NEUTRAL	NA	2	"ACTR2,SPRED2"
TCGA.NH.A6GC	2	65580734	65615427	22	-0.4293	NEUTRAL	NA	1	SPRED2
TCGA.NH.A6GC	2	65619024	130544239	16579	0.3176	NEUTRAL	NA	333	Too-Many
TCGA.AG.3584	2	65647632	220319480	41538	0.0038	NEUTRAL	NA	739	Too-Many
TCGA.AA.3982	2	65861654	68049567	927	-0.2322	NEUTRAL	NA	2	"ETAA1,MEIS1"
TCGA.AA.3941	2	65874234	68188449	994	-0.2072	NEUTRAL	NA	2	"ETAA1,MEIS1"
TCGA.AA.3850	2	65935156	66061697	66	-0.25595	NEUTRAL	NA	0	None
TCGA.AA.3844	2	65979639	68188449	942	-0.3394	NEUTRAL	NA	2	"ETAA1,MEIS1"
TCGA.AA.3850	2	66062087	66208486	86	0.12935	NEUTRAL	NA	0	None
TCGA.AA.3811	2	66074344	68048712	821	-0.0789	NEUTRAL	NA	2	"ETAA1,MEIS1"
TCGA.AA.3850	2	66208799	68195178	821	-0.39135	NEUTRAL	NA	2	"ETAA1,MEIS1"
TCGA.AZ.4614	2	66527177	243048759	48012	0.0036	NEUTRAL	NA	899	Too-Many
TCGA.AG.4009.01A	2	66667648	71191886	271	0.0165	NEUTRAL	NA	37	"AAK1,ADD2,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,BMP10,C1D,C2orf42,CD207,CLEC4F,CNRIP1,ETAA1,FAM136A,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,MEIS1,MXD1,NFU1,PCBP1,PCYOX1,PLEK,PNO1,PPP3R1,PROKR1,SNRNP27,SNRPG,TGFA,TIA1,VAX2,WDR92"
TCGA.CK.5914.01A	2	66688909	68546315	47	0.1831	NEUTRAL	NA	7	"C1D,CNRIP1,ETAA1,MEIS1,PNO1,PPP3R1,WDR92"
TCGA.AG.A00C.01A	2	66691189	66775012	3	-0.3653	NEUTRAL	NA	1	MEIS1
TCGA.AG.3909.01A	2	66691189	68273096	14	-0.3186	NEUTRAL	NA	3	"C1D,ETAA1,MEIS1"
TCGA.AG.A00C.01A	2	66794525	68273096	11	0.202	NEUTRAL	NA	3	"C1D,ETAA1,MEIS1"
TCGA.F5.6864	2	67109727	243048759	48353	0.1554	NEUTRAL	NA	898	Too-Many
TCGA.AA.3864	2	67351482	67398319	12	-0.1056	NEUTRAL	NA	0	None
TCGA.AA.3864	2	67406813	72419302	1840	0.0734	NEUTRAL	NA	46	"AAK1,ADD2,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,BMP10,C1D,C2orf42,CD207,CLEC4F,CNRIP1,CYP26B1,DYSF,ETAA1,EXOC6B,FAM136A,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,MCEE,MPHOSPH10,MXD1,NAGK,NFU1,PAIP2B,PCBP1,PCYOX1,PLEK,PNO1,PPP3R1,PROKR1,SNRNP27,SNRPG,TEX261,TGFA,TIA1,VAX2,WDR92,ZNF638"
TCGA.AA.A00D.01A	2	67624539	79386392	657	-0.4228	NEUTRAL	NA	101	Too-Many
TCGA.AA.3867	2	67654112	72588999	1783	0.2104	NEUTRAL	NA	45	"AAK1,ADD2,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,BMP10,C1D,C2orf42,CD207,CLEC4F,CNRIP1,CYP26B1,DYSF,EXOC6B,FAM136A,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,MCEE,MPHOSPH10,MXD1,NAGK,NFU1,PAIP2B,PCBP1,PCYOX1,PLEK,PNO1,PPP3R1,PROKR1,SNRNP27,SNRPG,TEX261,TGFA,TIA1,VAX2,WDR92,ZNF638"
TCGA.AA.3819	2	67721426	114186946	10750	0.0183	NEUTRAL	NA	283	Too-Many
TCGA.AA.3811	2	68049567	72415802	1516	0.2535	NEUTRAL	NA	45	"AAK1,ADD2,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,BMP10,C1D,C2orf42,CD207,CLEC4F,CNRIP1,CYP26B1,DYSF,EXOC6B,FAM136A,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,MCEE,MPHOSPH10,MXD1,NAGK,NFU1,PAIP2B,PCBP1,PCYOX1,PLEK,PNO1,PPP3R1,PROKR1,SNRNP27,SNRPG,TEX261,TGFA,TIA1,VAX2,WDR92,ZNF638"
TCGA.AA.3982	2	68051454	70060405	734	0.0859	NEUTRAL	NA	19	"AAK1,ANTXR1,ANXA4,APLF,ARHGAP25,BMP10,C1D,CNRIP1,FBXO48,GFPT1,GKN1,GKN2,GMCL1,NFU1,PLEK,PNO1,PPP3R1,PROKR1,WDR92"
TCGA.AG.A01W.01A	2	68127759	68225185	7	0.0399	NEUTRAL	NA	0	None
TCGA.A6.6653	2	68157038	85972628	5374	0.0002	NEUTRAL	NA	123	Too-Many
TCGA.AA.3972	2	68187131	81027636	4166	0.0534	NEUTRAL	NA	102	Too-Many
TCGA.AA.3844	2	68192532	69223619	380	-0.0364	NEUTRAL	NA	13	"APLF,ARHGAP25,BMP10,C1D,CNRIP1,FBXO48,GKN1,GKN2,PLEK,PNO1,PPP3R1,PROKR1,WDR92"
TCGA.AA.3941	2	68192532	76256473	2430	0.2443	NEUTRAL	NA	95	"AAK1,ACTG2,ADD2,ALMS1,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,AUP1,BMP10,BOLA3,C1D,C2orf42,C2orf78,C2orf81,CCDC142,CCT7,CD207,CLEC4F,CNRIP1,CYP26B1,DCTN1,DGUOK,DOK1,DQX1,DUSP11,DYSF,EGR4,EMX1,EVA1A,EXOC6B,FAM136A,FBXO41,FBXO48,FIGLA,GCFC2,GFPT1,GKN1,GKN2,GMCL1,HK2,HTRA2,INO80B,LBX2,LOXL3,M1AP,MCEE,MOB1A,MOGS,MPHOSPH10,MRPL19,MRPL53,MTHFD2,MXD1,NAGK,NAT8,NAT8B,NFU1,NOTO,PAIP2B,PCBP1,PCGF1,PCYOX1,PLEK,PNO1,POLE4,PPP3R1,PRADC1,PROKR1,RAB11FIP5,RTKN,SEMA4F,SFXN5,SLC4A5,SMYD5,SNRNP27,SNRPG,SPR,STAMBP,TACR1,TET3,TEX261,TGFA,TIA1,TLX2,TPRKB,TTC31,VAX2,WBP1,WDR54,WDR92,ZNF638"
TCGA.AA.3850	2	68196993	72415802	1438	0.19175	NEUTRAL	NA	45	"AAK1,ADD2,ANKRD53,ANTXR1,ANXA4,APLF,ARHGAP25,ASPRV1,ATP6V1B1,BMP10,C1D,C2orf42,CD207,CLEC4F,CNRIP1,CYP26B1,DYSF,EXOC6B,FAM136A,FBXO48,FIGLA,GFPT1,GKN1,GKN2,GMCL1,MCEE,MPHOSPH10,MXD1,NAGK,NFU1,PAIP2B,PCBP1,PCYOX1,PLEK,PNO1,PPP3R1,PROKR1,SNRNP27,SNRPG,TEX261,TGFA,TIA1,VAX2,WDR92,ZNF638"
TCGA.AG.A01W.01A	2	68253928	69183432	68	0.2099	NEUTRAL	NA	12	"APLF,ARHGAP25,BMP10,C1D,CNRIP1,FBXO48,GKN2,PLEK,PNO1,PPP3R1,PROKR1,WDR92"
TCGA.AG.A00C.01A	2	68273408	68622795	33	-0.2191	NEUTRAL	NA	6	"C1D,CNRIP1,PLEK,PNO1,PPP3R1,WDR92"
TCGA.AZ.6608	2	68492036	243048759	47683	-0.0111	NEUTRAL	NA	893	Too-Many
TCGA.AG.A00C.01A	2	68691304	68764967	8	0.2137	NEUTRAL	NA	2	"APLF,FBXO48"
TCGA.CK.5914.01A	2	68691304	68881963	14	-0.1325	NEUTRAL	NA	3	"APLF,FBXO48,PROKR1"
TCGA.AG.A00C.01A	2	68772277	69581580	62	-0.2057	NEUTRAL	NA	8	"ANTXR1,APLF,ARHGAP25,BMP10,GFPT1,GKN1,GKN2,PROKR1"
TCGA.AG.3909.01A	2	68794410	69009312	8	-0.018	NEUTRAL	NA	3	"APLF,ARHGAP25,PROKR1"
TCGA.AG.A01W.01A	2	69203591	71651210	288	-0.0891	NEUTRAL	NA	30	"AAK1,ADD2,ANKRD53,ANTXR1,ANXA4,ASPRV1,ATP6V1B1,C2orf42,CD207,CLEC4F,FAM136A,FIGLA,GFPT1,GKN1,GMCL1,MCEE,MPHOSPH10,MXD1,NAGK,NFU1,PAIP2B,PCBP1,PCYOX1,SNRNP27,SNRPG,TEX261,TGFA,TIA1,VAX2,ZNF638"
TCGA.AA.3844	2	69254026	69298239	25	-0.183	NEUTRAL	NA	1	ANTXR1
TCGA.AA.3844	2	69304718	69333699	22	0.1891	NEUTRAL	NA	1	ANTXR1
TCGA.AA.3844	2	69334856	69343148	4	-0.4817	NEUTRAL	NA	1	ANTXR1
TCGA.AA.3844	2	69344396	69354699	6	0.302	NEUTRAL	NA	1	ANTXR1
TCGA.AA.3844	2	69370975	70063526	208	0.0728	NEUTRAL	NA	6	"AAK1,ANTXR1,ANXA4,GFPT1,GMCL1,NFU1"
TCGA.AA.A00N.01A	2	69553257	69614121	19	0.1385	NEUTRAL	NA	1	GFPT1
TCGA.AG.3906.01A	2	69565042	69646612	18	0.2874	NEUTRAL	NA	2	"GFPT1,NFU1"
TCGA.AG.A00C.01A	2	69583559	69658986	13	0.2732	NEUTRAL	NA	2	"GFPT1,NFU1"
TCGA.AG.3909.01A	2	69597104	69658986	9	-0.3481	NEUTRAL	NA	2	"GFPT1,NFU1"
TCGA.CK.5914.01A	2	69597104	69658986	9	-0.0812	NEUTRAL	NA	2	"GFPT1,NFU1"
TCGA.AG.3906.01A	2	69650667	70187822	61	-0.0557	NEUTRAL	NA	7	"AAK1,ANXA4,ASPRV1,GMCL1,MXD1,NFU1,SNRNP27"
TCGA.AG.A00C.01A	2	69702968	70034992	26	-0.1781	NEUTRAL	NA	2	"AAK1,ANXA4"
TCGA.G4.6303	2	69994542	70118426	41	-0.4125	NEUTRAL	NA	2	"ANXA4,GMCL1"
TCGA.AA.A00Q.01A	2	70008604	73520273	280	-0.392	NEUTRAL	NA	38	"ADD2,ANKRD53,ANXA4,ASPRV1,ATP6V1B1,C2orf42,CCT7,CD207,CLEC4F,CYP26B1,DYSF,EGR4,EMX1,EXOC6B,FAM136A,FBXO41,FIGLA,GMCL1,MCEE,MPHOSPH10,MXD1,NAGK,NOTO,PAIP2B,PCBP1,PCYOX1,PRADC1,RAB11FIP5,SFXN5,SMYD5,SNRNP27,SNRPG,SPR,TEX261,TGFA,TIA1,VAX2,ZNF638"
TCGA.AG.A00C.01A	2	70037678	70527923	64	0.2106	NEUTRAL	NA	11	"ANXA4,ASPRV1,C2orf42,FAM136A,GMCL1,MXD1,PCBP1,PCYOX1,SNRNP27,SNRPG,TIA1"
TCGA.CK.5914.01A	2	70039757	70485260	55	0.1625	NEUTRAL	NA	9	"ANXA4,ASPRV1,C2orf42,GMCL1,MXD1,PCBP1,PCYOX1,SNRNP27,TIA1"
TCGA.AG.3909.01A	2	70043179	70124452	22	-0.0315	NEUTRAL	NA	3	"ANXA4,GMCL1,SNRNP27"
TCGA.AA.A00O.01A	2	70070239	70187822	22	0.093	NEUTRAL	NA	4	"ASPRV1,GMCL1,MXD1,SNRNP27"
TCGA.AA.3982	2	70072463	70272271	50	0.2043	NEUTRAL	NA	4	"ASPRV1,GMCL1,MXD1,SNRNP27"
TCGA.AA.3844	2	70072463	71975920	613	0.1278	NEUTRAL	NA	25	"ADD2,ANKRD53,ASPRV1,ATP6V1B1,C2orf42,CD207,CLEC4F,DYSF,FAM136A,FIGLA,GMCL1,MCEE,MPHOSPH10,MXD1,NAGK,PAIP2B,PCBP1,PCYOX1,SNRNP27,SNRPG,TEX261,TGFA,TIA1,VAX2,ZNF638"
TCGA.AA.A00N.01A	2	70074618	70123521	11	0.1737	NEUTRAL	NA	2	"GMCL1,SNRNP27"
TCGA.G4.6303	2	70120607	114186946	9799	-0.0097	NEUTRAL	NA	264	Too-Many
TCGA.AA.A00O.01A	2	70314835	70406615	8	-0.2334	NEUTRAL	NA	2	"C2orf42,PCBP1"
TCGA.AG.3891.01A	2	70314835	70683441	36	0.318	NEUTRAL	NA	7	"C2orf42,FAM136A,PCBP1,PCYOX1,SNRPG,TGFA,TIA1"
TCGA.A6.2678	2	70346526	70360949	4	-0.0081	NEUTRAL	NA	0	None
TCGA.A6.2678	2	70368922	70486851	20	-0.5031	NEUTRAL	NA	3	"C2orf42,PCYOX1,TIA1"
TCGA.AF.2689	2	70372028	70539995	31	-0.2248	NEUTRAL	NA	5	"C2orf42,FAM136A,PCYOX1,SNRPG,TIA1"
TCGA.AG.3909.01A	2	70387707	70408304	7	-0.0971	NEUTRAL	NA	1	C2orf42
TCGA.AA.A00N.01A	2	70408304	70485260	14	-0.0535	NEUTRAL	NA	3	"C2orf42,PCYOX1,TIA1"
TCGA.AG.3909.01A	2	70408718	70475463	12	0.3403	NEUTRAL	NA	2	"C2orf42,TIA1"
TCGA.AG.A02X.01A	2	70439823	74542011	378	-0.3553	NEUTRAL	NA	45	"ACTG2,ADD2,ALMS1,ANKRD53,ATP6V1B1,BOLA3,C2orf78,CCT7,CD207,CLEC4F,CYP26B1,DGUOK,DUSP11,DYSF,EGR4,EMX1,EXOC6B,FAM136A,FBXO41,FIGLA,MCEE,MOB1A,MPHOSPH10,MTHFD2,NAGK,NAT8,NAT8B,NOTO,PAIP2B,PCYOX1,PRADC1,RAB11FIP5,SFXN5,SLC4A5,SMYD5,SNRPG,SPR,STAMBP,TET3,TEX261,TGFA,TIA1,TPRKB,VAX2,ZNF638"
TCGA.AA.A00O.01A	2	70439823	85097328	592	-0.075	NEUTRAL	NA	81	"ACTG2,ADD2,ALMS1,ANKRD53,ATP6V1B1,AUP1,BOLA3,C2orf78,C2orf81,CCDC142,CCT7,CD207,CLEC4F,CTNNA2,CYP26B1,DCTN1,DGUOK,DNAH6,DOK1,DQX1,DUSP11,DYSF,EGR4,EMX1,EVA1A,EXOC6B,FAM136A,FBXO41,FIGLA,GCFC2,HK2,HTRA2,INO80B,LBX2,LOXL3,LRRTM1,LRRTM4,M1AP,MCEE,MOB1A,MOGS,MPHOSPH10,MRPL19,MRPL53,MTHFD2,NAGK,NAT8,NAT8B,NOTO,PAIP2B,PCGF1,PCYOX1,POLE4,PRADC1,RAB11FIP5,REG1A,REG1B,REG3A,REG3G,RTKN,SEMA4F,SFXN5,SLC4A5,SMYD5,SNRPG,SPR,STAMBP,SUCLG1,TACR1,TET3,TEX261,TGFA,TIA1,TLX2,TPRKB,TRABD2A,TTC31,VAX2,WBP1,WDR54,ZNF638"
TCGA.AG.3906.01A	2	70475463	73457210	236	0.0055	NEUTRAL	NA	28	"ADD2,ANKRD53,ATP6V1B1,CD207,CLEC4F,CYP26B1,DYSF,EMX1,EXOC6B,FAM136A,FIGLA,MCEE,MPHOSPH10,NAGK,NOTO,PAIP2B,PCYOX1,PRADC1,RAB11FIP5,SFXN5,SMYD5,SNRPG,SPR,TEX261,TGFA,TIA1,VAX2,ZNF638"
TCGA.A6.2678	2	70488469	130668818	14788	-0.0123	NEUTRAL	NA	305	Too-Many
TCGA.AF.2689	2	70542918	97281413	5218	0.2701	NEUTRAL	NA	144	Too-Many
TCGA.AA.3982	2	70560938	70857058	139	0.1803	NEUTRAL	NA	1	TGFA
TCGA.AG.A00C.01A	2	70677924	70933307	20	-0.2244	NEUTRAL	NA	2	"ADD2,TGFA"
TCGA.AA.A00F.01A	2	70677924	71361707	71	-0.0388	NEUTRAL	NA	12	"ADD2,ANKRD53,ATP6V1B1,CD207,CLEC4F,FIGLA,MCEE,MPHOSPH10,NAGK,TEX261,TGFA,VAX2"
TCGA.AG.3891.01A	2	70692696	85894760	711	-0.0185	NEUTRAL	NA	94	"ACTG2,ADD2,ALMS1,ANKRD53,ATP6V1B1,AUP1,BOLA3,C2orf68,C2orf78,C2orf81,CAPG,CCDC142,CCT7,CD207,CLEC4F,CTNNA2,CYP26B1,DCTN1,DGUOK,DNAH6,DOK1,DQX1,DUSP11,DYSF,EGR4,ELMOD3,EMX1,EVA1A,EXOC6B,FBXO41,FIGLA,GCFC2,GGCX,HK2,HTRA2,INO80B,KCMF1,LBX2,LOXL3,LRRTM1,LRRTM4,M1AP,MAT2A,MCEE,MOB1A,MOGS,MPHOSPH10,MRPL19,MRPL53,MTHFD2,NAGK,NAT8,NAT8B,NOTO,PAIP2B,PCGF1,POLE4,PRADC1,RAB11FIP5,REG1A,REG1B,REG3A,REG3G,RETSAT,RNF181,RTKN,SEMA4F,SFTPB,SFXN5,SH2D6,SLC4A5,SMYD5,SPR,STAMBP,SUCLG1,TACR1,TCF7L1,TET3,TEX261,TGFA,TGOLN2,TLX2,TMEM150A,TMSB10,TPRKB,TRABD2A,TTC31,USP39,VAMP5,VAMP8,VAX2,WBP1,WDR54,ZNF638"
TCGA.AA.3982	2	70864724	71975920	366	0.2778	NEUTRAL	NA	14	"ADD2,ANKRD53,ATP6V1B1,CD207,CLEC4F,DYSF,FIGLA,MCEE,MPHOSPH10,NAGK,PAIP2B,TEX261,VAX2,ZNF638"
TCGA.AA.3841	2	70944491	89130008	4902	0.0038	NEUTRAL	NA	120	Too-Many
TCGA.AA.A010.01A	2	71014764	71206188	31	0.1739	NEUTRAL	NA	6	"ANKRD53,ATP6V1B1,CD207,CLEC4F,FIGLA,VAX2"
TCGA.AG.A00C.01A	2	71036354	71170716	16	-0.1726	NEUTRAL	NA	4	"ATP6V1B1,CD207,CLEC4F,VAX2"
TCGA.AG.A00C.01A	2	71185137	71376945	43	0.3361	NEUTRAL	NA	6	"ANKRD53,ATP6V1B1,MCEE,MPHOSPH10,NAGK,TEX261"
TCGA.CK.5914.01A	2	71185137	71607593	59	-0.1283	NEUTRAL	NA	8	"ANKRD53,ATP6V1B1,MCEE,MPHOSPH10,NAGK,PAIP2B,TEX261,ZNF638"
TCGA.AA.A01Q.01A	2	71295732	71681073	52	0.1427	NEUTRAL	NA	6	"DYSF,MCEE,MPHOSPH10,NAGK,PAIP2B,ZNF638"
TCGA.AG.4009.01A	2	71297587	71796903	76	-0.0082	NEUTRAL	NA	6	"DYSF,MCEE,MPHOSPH10,NAGK,PAIP2B,ZNF638"
TCGA.AF.3914.01A	2	71297587	73487840	183	0.1608	NEUTRAL	NA	17	"CCT7,CYP26B1,DYSF,EMX1,EXOC6B,FBXO41,MCEE,MPHOSPH10,NAGK,NOTO,PAIP2B,PRADC1,RAB11FIP5,SFXN5,SMYD5,SPR,ZNF638"
TCGA.AG.3909.01A	2	71351319	71742702	50	0.1019	NEUTRAL	NA	5	"DYSF,MCEE,MPHOSPH10,PAIP2B,ZNF638"
TCGA.AA.A010.01A	2	71361707	71416928	10	-0.1246	NEUTRAL	NA	2	"MPHOSPH10,PAIP2B"
TCGA.AA.A00F.01A	2	71376945	71829823	63	0.0505	NEUTRAL	NA	4	"DYSF,MPHOSPH10,PAIP2B,ZNF638"
TCGA.AG.A00C.01A	2	71415540	71755376	43	-0.1494	NEUTRAL	NA	3	"DYSF,PAIP2B,ZNF638"
TCGA.AA.A00N.01A	2	71416928	71742702	42	0.2507	NEUTRAL	NA	3	"DYSF,PAIP2B,ZNF638"
TCGA.AA.A010.01A	2	71615715	71635773	14	-0.2955	NEUTRAL	NA	1	ZNF638
TCGA.CK.5914.01A	2	71623210	71633230	9	0.3245	NEUTRAL	NA	1	ZNF638
TCGA.CK.5914.01A	2	71635205	71661808	10	-0.2455	NEUTRAL	NA	1	ZNF638
TCGA.AA.A01Q.01A	2	71707939	71829823	33	-0.5032	NEUTRAL	NA	1	DYSF
TCGA.CK.5914.01A	2	71743245	71797329	19	-0.3224	NEUTRAL	NA	1	DYSF
TCGA.AG.A01W.01A	2	71761618	73014378	32	0.1514	NEUTRAL	NA	3	"CYP26B1,DYSF,EXOC6B"
TCGA.AG.A00C.01A	2	71762134	71797329	11	0.2743	NEUTRAL	NA	1	DYSF
TCGA.AG.4009.01A	2	71797329	71913507	26	0.3534	NEUTRAL	NA	1	DYSF
TCGA.CK.5914.01A	2	71797722	71828556	7	0.0698	NEUTRAL	NA	1	DYSF
TCGA.AG.A00C.01A	2	71797722	73447741	74	-0.1231	NEUTRAL	NA	9	"CYP26B1,DYSF,EMX1,EXOC6B,NOTO,RAB11FIP5,SFXN5,SMYD5,SPR"
TCGA.AG.A016.01A	2	71816672	71913507	23	-0.442	NEUTRAL	NA	1	DYSF
TCGA.AA.A00F.01A	2	71838335	71896190	12	-0.3112	NEUTRAL	NA	1	DYSF
TCGA.AA.A01Q.01A	2	71896190	73457210	53	-0.32	NEUTRAL	NA	10	"CYP26B1,DYSF,EMX1,EXOC6B,NOTO,PRADC1,RAB11FIP5,SFXN5,SMYD5,SPR"
TCGA.AA.A00F.01A	2	71896718	73339428	34	-0.0096	NEUTRAL	NA	7	"CYP26B1,DYSF,EMX1,EXOC6B,RAB11FIP5,SFXN5,SPR"
TCGA.AA.3844	2	71981933	72033514	26	-0.3382	NEUTRAL	NA	0	None
TCGA.AA.3982	2	72001263	72415802	153	0.2088	NEUTRAL	NA	2	"CYP26B1,EXOC6B"
TCGA.AA.3844	2	72036721	72415802	138	0.0661	NEUTRAL	NA	2	"CYP26B1,EXOC6B"
TCGA.AG.4009.01A	2	72359342	73477382	70	-0.0347	NEUTRAL	NA	10	"CCT7,CYP26B1,EMX1,EXOC6B,NOTO,PRADC1,RAB11FIP5,SFXN5,SMYD5,SPR"
TCGA.AG.A016.01A	2	72359342	74691645	243	-0.0632	NEUTRAL	NA	33	"ACTG2,ALMS1,BOLA3,C2orf78,C2orf81,CCT7,CYP26B1,DCTN1,DGUOK,DUSP11,EGR4,EMX1,EXOC6B,FBXO41,INO80B,MOB1A,MOGS,MTHFD2,NAT8,NAT8B,NOTO,PRADC1,RAB11FIP5,RTKN,SFXN5,SLC4A5,SMYD5,SPR,STAMBP,TET3,TPRKB,WBP1,WDR54"
TCGA.AA.3872	2	72419302	72641877	36	-0.294	NEUTRAL	NA	1	EXOC6B
TCGA.AA.3811	2	72419302	72796041	58	-0.3186	NEUTRAL	NA	1	EXOC6B
TCGA.AA.3864	2	72419863	72820072	60	-0.2622	NEUTRAL	NA	1	EXOC6B
TCGA.AA.3850	2	72464240	72588999	23	-0.20865	NEUTRAL	NA	1	EXOC6B
TCGA.AA.3930.01A	2	72562051	73160884	25	-0.368	NEUTRAL	NA	3	"EMX1,EXOC6B,SPR"
TCGA.AA.3850	2	72641877	73720465	160	0.14405	NEUTRAL	NA	12	"ALMS1,CCT7,EGR4,EMX1,EXOC6B,FBXO41,NOTO,PRADC1,RAB11FIP5,SFXN5,SMYD5,SPR"
TCGA.AA.3867	2	72641877	76226374	941	0.2387	NEUTRAL	NA	51	"ACTG2,ALMS1,AUP1,BOLA3,C2orf78,C2orf81,CCDC142,CCT7,DCTN1,DGUOK,DOK1,DQX1,DUSP11,EGR4,EMX1,EVA1A,EXOC6B,FBXO41,GCFC2,HK2,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOB1A,MOGS,MRPL19,MRPL53,MTHFD2,NAT8,NAT8B,NOTO,PCGF1,POLE4,PRADC1,RAB11FIP5,RTKN,SEMA4F,SFXN5,SLC4A5,SMYD5,SPR,STAMBP,TACR1,TET3,TLX2,TPRKB,TTC31,WBP1,WDR54"
TCGA.AA.3982	2	72647457	72786026	17	0.0457	NEUTRAL	NA	1	EXOC6B
TCGA.AA.3872	2	72647457	89605000	4381	0.0019	NEUTRAL	NA	105	Too-Many
TCGA.AA.3844	2	72657147	73149794	59	-0.0939	NEUTRAL	NA	3	"EMX1,EXOC6B,SPR"
TCGA.AA.A010.01A	2	72707697	73172093	22	0.0022	NEUTRAL	NA	4	"EMX1,EXOC6B,SFXN5,SPR"
TCGA.AA.3811	2	72808537	75905718	839	0.2146	NEUTRAL	NA	51	"ACTG2,ALMS1,AUP1,BOLA3,C2orf78,C2orf81,CCDC142,CCT7,DCTN1,DGUOK,DOK1,DQX1,DUSP11,EGR4,EMX1,EVA1A,EXOC6B,FBXO41,GCFC2,HK2,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOB1A,MOGS,MRPL19,MRPL53,MTHFD2,NAT8,NAT8B,NOTO,PCGF1,POLE4,PRADC1,RAB11FIP5,RTKN,SEMA4F,SFXN5,SLC4A5,SMYD5,SPR,STAMBP,TACR1,TET3,TLX2,TPRKB,TTC31,WBP1,WDR54"
TCGA.AA.3982	2	72852590	73645088	120	0.1906	NEUTRAL	NA	12	"ALMS1,CCT7,EGR4,EMX1,EXOC6B,FBXO41,NOTO,PRADC1,RAB11FIP5,SFXN5,SMYD5,SPR"
TCGA.AA.3864	2	72852590	102911056	5836	0.0069	NEUTRAL	NA	176	Too-Many
TCGA.AA.3856	2	72963796	243048759	46456	-0.0101	NEUTRAL	NA	853	Too-Many
TCGA.AG.A01W.01A	2	73025610	73333229	50	-0.2376	NEUTRAL	NA	5	"EMX1,EXOC6B,RAB11FIP5,SFXN5,SPR"
TCGA.AG.3909.01A	2	73052910	73160884	6	-0.5027	NEUTRAL	NA	3	"EMX1,EXOC6B,SPR"
TCGA.AA.3844	2	73157394	73531299	62	0.1977	NEUTRAL	NA	9	"CCT7,EGR4,EMX1,FBXO41,NOTO,PRADC1,RAB11FIP5,SFXN5,SMYD5"
TCGA.AG.3909.01A	2	73172093	73298686	13	0.2564	NEUTRAL	NA	1	SFXN5
TCGA.AA.3930.01A	2	73172093	73429773	20	0.138	NEUTRAL	NA	3	"NOTO,RAB11FIP5,SFXN5"
TCGA.AA.A00N.01A	2	73172093	73429773	20	0.2316	NEUTRAL	NA	3	"NOTO,RAB11FIP5,SFXN5"
TCGA.AA.A010.01A	2	73285595	73462628	29	-0.2363	NEUTRAL	NA	6	"CCT7,NOTO,PRADC1,RAB11FIP5,SFXN5,SMYD5"
TCGA.AG.3909.01A	2	73302620	73445952	6	-0.4379	NEUTRAL	NA	3	"NOTO,RAB11FIP5,SMYD5"
TCGA.AG.A01W.01A	2	73339553	74176067	112	0.1045	NEUTRAL	NA	16	"ACTG2,ALMS1,C2orf78,CCT7,DGUOK,DUSP11,EGR4,FBXO41,NAT8,NAT8B,NOTO,PRADC1,RAB11FIP5,SMYD5,STAMBP,TPRKB"
TCGA.CK.5914.01A	2	73435490	73487477	34	-0.4996	NEUTRAL	NA	5	"CCT7,FBXO41,NOTO,PRADC1,SMYD5"
TCGA.AA.3930.01A	2	73451017	75937690	340	0.1736	NEUTRAL	NA	45	"ACTG2,ALMS1,AUP1,BOLA3,C2orf78,C2orf81,CCDC142,CCT7,DCTN1,DGUOK,DOK1,DQX1,DUSP11,EGR4,EVA1A,FBXO41,GCFC2,HK2,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOB1A,MOGS,MRPL19,MRPL53,MTHFD2,NAT8,NAT8B,PCGF1,POLE4,PRADC1,RTKN,SEMA4F,SLC4A5,SMYD5,STAMBP,TACR1,TET3,TLX2,TPRKB,TTC31,WBP1,WDR54"
TCGA.AA.A00F.01A	2	73452698	73651541	10	-0.0264	NEUTRAL	NA	6	"ALMS1,CCT7,EGR4,FBXO41,PRADC1,SMYD5"
TCGA.AG.3909.01A	2	73476067	73518533	14	-0.4836	NEUTRAL	NA	3	"CCT7,EGR4,FBXO41"
TCGA.AA.A00N.01A	2	73479751	73635700	18	-0.3787	NEUTRAL	NA	4	"ALMS1,CCT7,EGR4,FBXO41"
TCGA.AA.A01Q.01A	2	73486065	74328511	63	0.2399	NEUTRAL	NA	12	"ACTG2,ALMS1,C2orf78,DGUOK,DUSP11,EGR4,FBXO41,NAT8,NAT8B,STAMBP,TET3,TPRKB"
TCGA.AG.A00C.01A	2	73495872	74184204	69	-0.175	NEUTRAL	NA	11	"ACTG2,ALMS1,C2orf78,DGUOK,DUSP11,EGR4,FBXO41,NAT8,NAT8B,STAMBP,TPRKB"
TCGA.AA.A010.01A	2	73518533	73682242	15	-0.1424	NEUTRAL	NA	2	"ALMS1,EGR4"
TCGA.AG.3906.01A	2	73518533	74691645	170	-0.0545	NEUTRAL	NA	22	"ACTG2,ALMS1,BOLA3,C2orf78,C2orf81,DCTN1,DGUOK,DUSP11,EGR4,INO80B,MOB1A,MOGS,MTHFD2,NAT8,NAT8B,RTKN,SLC4A5,STAMBP,TET3,TPRKB,WBP1,WDR54"
TCGA.AF.3914.01A	2	73519708	85628650	404	0.1994	NEUTRAL	NA	58	"ACTG2,ALMS1,AUP1,BOLA3,C2orf78,C2orf81,CAPG,CCDC142,CTNNA2,DCTN1,DGUOK,DNAH6,DOK1,DQX1,DUSP11,EGR4,ELMOD3,EVA1A,GCFC2,HK2,HTRA2,INO80B,KCMF1,LBX2,LOXL3,LRRTM1,LRRTM4,M1AP,MOB1A,MOGS,MRPL19,MRPL53,MTHFD2,NAT8,NAT8B,PCGF1,POLE4,REG1A,REG1B,REG3A,REG3G,RETSAT,RTKN,SEMA4F,SLC4A5,STAMBP,SUCLG1,TACR1,TCF7L1,TET3,TGOLN2,TLX2,TMSB10,TPRKB,TRABD2A,TTC31,WBP1,WDR54"
TCGA.AA.3844	2	73533619	73720465	35	-0.2225	NEUTRAL	NA	1	ALMS1
TCGA.AG.4009.01A	2	73635700	74042150	42	0.0847	NEUTRAL	NA	6	"ALMS1,C2orf78,DUSP11,NAT8,NAT8B,TPRKB"
TCGA.AA.3982	2	73648183	73731470	18	-0.5001	NEUTRAL	NA	1	ALMS1
TCGA.AA.A00F.01A	2	73675073	73799411	4	0.3472	NEUTRAL	NA	1	ALMS1
TCGA.AA.A00Q.01A	2	73675073	73927747	11	0.3377	NEUTRAL	NA	3	"ALMS1,NAT8,NAT8B"
TCGA.AA.3844	2	73730173	75162208	375	0.136	NEUTRAL	NA	35	"ACTG2,ALMS1,AUP1,BOLA3,C2orf78,C2orf81,CCDC142,DCTN1,DGUOK,DOK1,DQX1,DUSP11,HK2,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOB1A,MOGS,MRPL53,MTHFD2,NAT8,NAT8B,PCGF1,RTKN,SEMA4F,SLC4A5,STAMBP,TET3,TLX2,TPRKB,TTC31,WBP1,WDR54"
TCGA.AA.3850	2	73731470	73826766	14	-0.10325	NEUTRAL	NA	1	ALMS1
TCGA.AA.3982	2	73740424	75969942	714	0.0912	NEUTRAL	NA	40	"ACTG2,ALMS1,AUP1,BOLA3,C2orf78,C2orf81,CCDC142,DCTN1,DGUOK,DOK1,DQX1,DUSP11,EVA1A,GCFC2,HK2,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOB1A,MOGS,MRPL19,MRPL53,MTHFD2,NAT8,NAT8B,PCGF1,POLE4,RTKN,SEMA4F,SLC4A5,STAMBP,TACR1,TET3,TLX2,TPRKB,TTC31,WBP1,WDR54"
TCGA.AA.3850	2	73827116	74930898	265	0.33075	NEUTRAL	NA	34	"ACTG2,ALMS1,AUP1,BOLA3,C2orf78,C2orf81,CCDC142,DCTN1,DGUOK,DOK1,DQX1,DUSP11,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOB1A,MOGS,MRPL53,MTHFD2,NAT8,NAT8B,PCGF1,RTKN,SEMA4F,SLC4A5,STAMBP,TET3,TLX2,TPRKB,TTC31,WBP1,WDR54"
TCGA.AA.A00F.01A	2	73828345	74273399	45	-0.0763	NEUTRAL	NA	10	"ACTG2,ALMS1,C2orf78,DGUOK,DUSP11,NAT8,NAT8B,STAMBP,TET3,TPRKB"
TCGA.AA.A00Q.01A	2	73957015	74185783	39	-0.3537	NEUTRAL	NA	6	"ACTG2,C2orf78,DGUOK,DUSP11,STAMBP,TPRKB"
TCGA.AA.A010.01A	2	74074477	74089272	6	-0.0736	NEUTRAL	NA	1	STAMBP
TCGA.AG.4009.01A	2	74076443	74185783	20	0.1317	NEUTRAL	NA	3	"ACTG2,DGUOK,STAMBP"
TCGA.AA.A00N.01A	2	74185225	74328511	13	-0.0921	NEUTRAL	NA	2	"DGUOK,TET3"
TCGA.AG.A00C.01A	2	74185225	74448513	28	0.3333	NEUTRAL	NA	6	"BOLA3,DGUOK,MOB1A,MTHFD2,SLC4A5,TET3"
TCGA.AG.A01W.01A	2	74188709	74219870	7	-0.3017	NEUTRAL	NA	1	TET3
TCGA.AG.A01W.01A	2	74222864	74336369	34	0.05	NEUTRAL	NA	1	TET3
TCGA.AG.4009.01A	2	74273399	74432791	16	-0.4374	NEUTRAL	NA	4	"BOLA3,MOB1A,MTHFD2,TET3"
TCGA.AA.A010.01A	2	74314929	74451916	27	0.158	NEUTRAL	NA	5	"BOLA3,MOB1A,MTHFD2,SLC4A5,TET3"
TCGA.CK.5914.01A	2	74326366	74458308	27	-0.2742	NEUTRAL	NA	5	"BOLA3,MOB1A,MTHFD2,SLC4A5,TET3"
TCGA.AG.A01W.01A	2	74340154	74460567	28	-0.2711	NEUTRAL	NA	4	"BOLA3,MOB1A,MTHFD2,SLC4A5"
TCGA.A6.3810.01A	2	74362602	74451916	20	-0.0662	NEUTRAL	NA	4	"BOLA3,MOB1A,MTHFD2,SLC4A5"
TCGA.AA.A00Q.01A	2	74362602	74477429	18	-0.2975	NEUTRAL	NA	4	"BOLA3,MOB1A,MTHFD2,SLC4A5"
TCGA.AA.A01Q.01A	2	74362602	74649234	54	-0.0805	NEUTRAL	NA	7	"BOLA3,C2orf81,DCTN1,MOB1A,MTHFD2,SLC4A5,WDR54"
TCGA.AG.4009.01A	2	74434779	74441159	6	-0.0055	NEUTRAL	NA	1	MTHFD2
TCGA.AA.A00F.01A	2	74448513	75933607	173	0.0952	NEUTRAL	NA	27	"AUP1,C2orf81,CCDC142,DCTN1,DOK1,DQX1,EVA1A,GCFC2,HK2,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOGS,MRPL19,MRPL53,PCGF1,POLE4,RTKN,SEMA4F,SLC4A5,TACR1,TLX2,TTC31,WBP1,WDR54"
TCGA.AG.A00C.01A	2	74449941	74592973	32	-0.2136	NEUTRAL	NA	2	"DCTN1,SLC4A5"
TCGA.AG.3909.01A	2	74449941	74598633	40	0.1013	NEUTRAL	NA	2	"DCTN1,SLC4A5"
TCGA.A6.3810.01A	2	74454032	141747089	3181	0.2216	NEUTRAL	NA	309	Too-Many
TCGA.CK.5914.01A	2	74459547	74486653	13	0.2886	NEUTRAL	NA	1	SLC4A5
TCGA.AG.A01W.01A	2	74506858	74545105	23	0.0505	NEUTRAL	NA	1	SLC4A5
TCGA.AG.A01W.01A	2	74545525	74606097	29	-0.4621	NEUTRAL	NA	2	"DCTN1,SLC4A5"
TCGA.CK.5914.01A	2	74592174	74598633	11	0.3721	NEUTRAL	NA	1	DCTN1
TCGA.CK.5914.01A	2	74599966	74762382	86	-0.4962	NEUTRAL	NA	17	"AUP1,C2orf81,CCDC142,DCTN1,DQX1,HTRA2,INO80B,LBX2,LOXL3,MOGS,MRPL53,PCGF1,RTKN,TLX2,TTC31,WBP1,WDR54"
TCGA.AG.A014.01A	2	74604488	74789293	81	0.3045	NEUTRAL	NA	19	"AUP1,C2orf81,CCDC142,DCTN1,DOK1,DQX1,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOGS,MRPL53,PCGF1,RTKN,TLX2,TTC31,WBP1,WDR54"
TCGA.AG.A01W.01A	2	74607355	74632926	19	0.223	NEUTRAL	NA	1	DCTN1
TCGA.AA.A00Q.01A	2	74607552	74648814	3	0.3579	NEUTRAL	NA	2	"C2orf81,DCTN1"
TCGA.AG.4009.01A	2	74649234	74666617	15	-0.0123	NEUTRAL	NA	2	"RTKN,WDR54"
TCGA.AA.A010.01A	2	74649932	74668786	15	0.1407	NEUTRAL	NA	2	"RTKN,WDR54"
TCGA.AG.A01W.01A	2	74656057	74755175	12	0.0938	NEUTRAL	NA	12	"AUP1,CCDC142,DQX1,INO80B,LBX2,MOGS,MRPL53,PCGF1,RTKN,TLX2,TTC31,WBP1"
TCGA.AA.A00Q.01A	2	74666617	74708916	16	-0.3542	NEUTRAL	NA	6	"CCDC142,INO80B,MOGS,MRPL53,RTKN,WBP1"
TCGA.AA.A010.01A	2	74682213	74742740	35	-0.2293	NEUTRAL	NA	9	"CCDC142,INO80B,LBX2,MOGS,MRPL53,PCGF1,TLX2,TTC31,WBP1"
TCGA.AA.A01Q.01A	2	74684420	74726413	19	-0.1421	NEUTRAL	NA	7	"CCDC142,INO80B,LBX2,MOGS,MRPL53,TTC31,WBP1"
TCGA.AA.A00L.01A	2	74688385	74725026	13	-0.0404	NEUTRAL	NA	5	"CCDC142,LBX2,MOGS,MRPL53,TTC31"
TCGA.AG.4009.01A	2	74691645	74732207	17	0.0833	NEUTRAL	NA	6	"CCDC142,LBX2,MOGS,MRPL53,PCGF1,TTC31"
TCGA.AG.A016.01A	2	74699204	74752629	26	-0.3791	NEUTRAL	NA	7	"CCDC142,DQX1,LBX2,MRPL53,PCGF1,TLX2,TTC31"
TCGA.AG.3906.01A	2	74699204	74808789	56	0.2303	NEUTRAL	NA	12	"AUP1,CCDC142,DOK1,DQX1,HTRA2,LBX2,LOXL3,M1AP,MRPL53,PCGF1,TLX2,TTC31"
TCGA.AA.A00Q.01A	2	74725026	80529345	123	-0.4686	NEUTRAL	NA	23	"AUP1,CTNNA2,DOK1,DQX1,EVA1A,GCFC2,HK2,HTRA2,LBX2,LOXL3,LRRTM1,LRRTM4,M1AP,MRPL19,PCGF1,POLE4,REG1A,REG1B,REG3A,REG3G,SEMA4F,TACR1,TLX2"
TCGA.AA.A00L.01A	2	74729752	75081373	55	-0.4678	NEUTRAL	NA	11	"AUP1,DOK1,DQX1,HK2,HTRA2,LBX2,LOXL3,M1AP,PCGF1,SEMA4F,TLX2"
TCGA.AA.A029.01A	2	74749656	219129753	6627	-0.0793	NEUTRAL	NA	614	Too-Many
TCGA.AG.A016.01A	2	74753846	74763796	18	0.306	NEUTRAL	NA	3	"AUP1,HTRA2,LOXL3"
TCGA.AG.A01W.01A	2	74755474	74954430	9	-0.2495	NEUTRAL	NA	6	"AUP1,DOK1,HTRA2,LOXL3,M1AP,SEMA4F"
TCGA.AG.A02X.01A	2	74755846	89156827	452	-0.3565	NEUTRAL	NA	66	"ATOH8,AUP1,C2orf68,CAPG,CD8A,CD8B,CHMP3,CTNNA2,DNAH6,DOK1,EIF2AK3,ELMOD3,EVA1A,FABP1,FOXI3,GCFC2,GGCX,GNLY,HK2,HTRA2,IMMT,KCMF1,KDM3A,KRCC1,LOXL3,LRRTM1,LRRTM4,M1AP,MAT2A,MRPL19,MRPL35,PLGLB1,PLGLB2,POLE4,POLR1A,PTCD3,REEP1,REG1A,REG1B,REG3A,REG3G,RETSAT,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,RPIA,SEMA4F,SFTPB,SH2D6,SMYD1,ST3GAL5,SUCLG1,TACR1,TCF7L1,TEX37,TGOLN2,THNSL2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.AA.3967.01A	2	74760708	75933607	83	0.1196	NEUTRAL	NA	10	"DOK1,EVA1A,GCFC2,HK2,LOXL3,M1AP,MRPL19,POLE4,SEMA4F,TACR1"
TCGA.AA.A010.01A	2	74762703	74808789	18	-0.1885	NEUTRAL	NA	3	"DOK1,LOXL3,M1AP"
TCGA.AA.A00N.01A	2	74762703	74881455	22	-0.5084	NEUTRAL	NA	4	"DOK1,LOXL3,M1AP,SEMA4F"
TCGA.CK.5914.01A	2	74762703	75196446	54	0.1529	NEUTRAL	NA	6	"DOK1,HK2,LOXL3,M1AP,POLE4,SEMA4F"
TCGA.AG.3909.01A	2	74776456	75196446	46	-0.1451	NEUTRAL	NA	6	"DOK1,HK2,LOXL3,M1AP,POLE4,SEMA4F"
TCGA.AA.A01Q.01A	2	74779397	85604415	151	0.1749	NEUTRAL	NA	26	"CTNNA2,DNAH6,DOK1,ELMOD3,EVA1A,GCFC2,HK2,KCMF1,LOXL3,LRRTM1,LRRTM4,M1AP,MRPL19,POLE4,REG1A,REG1B,REG3A,REG3G,RETSAT,SEMA4F,SUCLG1,TACR1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AG.4009.01A	2	74785792	85628650	177	0.037	NEUTRAL	NA	25	"CAPG,CTNNA2,DNAH6,ELMOD3,EVA1A,GCFC2,HK2,KCMF1,LRRTM1,LRRTM4,M1AP,MRPL19,POLE4,REG1A,REG1B,REG3A,REG3G,RETSAT,SEMA4F,SUCLG1,TACR1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AG.A016.01A	2	74802516	85576507	154	-0.2587	NEUTRAL	NA	23	"CTNNA2,DNAH6,EVA1A,GCFC2,HK2,KCMF1,LRRTM1,LRRTM4,M1AP,MRPL19,POLE4,REG1A,REG1B,REG3A,REG3G,RETSAT,SEMA4F,SUCLG1,TACR1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AG.A014.01A	2	74802516	131128740	2231	-0.0945	NEUTRAL	NA	252	Too-Many
TCGA.AG.3906.01A	2	74834145	85576507	150	-0.075	NEUTRAL	NA	23	"CTNNA2,DNAH6,EVA1A,GCFC2,HK2,KCMF1,LRRTM1,LRRTM4,M1AP,MRPL19,POLE4,REG1A,REG1B,REG3A,REG3G,RETSAT,SEMA4F,SUCLG1,TACR1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AG.A00C.01A	2	74900537	75874178	35	-0.1934	NEUTRAL	NA	6	"EVA1A,HK2,MRPL19,POLE4,SEMA4F,TACR1"
TCGA.AA.3850	2	74939717	75152929	90	0.36555	NEUTRAL	NA	1	HK2
TCGA.AG.A01W.01A	2	74954873	74971383	11	0.1779	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	75049960	85115604	173	0.106	NEUTRAL	NA	16	"CTNNA2,DNAH6,EVA1A,GCFC2,HK2,LRRTM1,LRRTM4,MRPL19,POLE4,REG1A,REG1B,REG3A,REG3G,SUCLG1,TACR1,TRABD2A"
TCGA.AA.A00L.01A	2	75094716	75116335	14	0.0192	NEUTRAL	NA	1	HK2
TCGA.AA.A00L.01A	2	75117874	84811101	75	-0.4795	NEUTRAL	NA	15	"CTNNA2,DNAH6,EVA1A,GCFC2,HK2,LRRTM1,LRRTM4,MRPL19,POLE4,REG1A,REG1B,REG3A,REG3G,SUCLG1,TACR1"
TCGA.AA.3850	2	75155354	76317046	433	-0.16165	NEUTRAL	NA	5	"EVA1A,GCFC2,MRPL19,POLE4,TACR1"
TCGA.AA.3844	2	75165904	75238923	19	0.1744	NEUTRAL	NA	1	POLE4
TCGA.AA.3844	2	75239624	76209507	376	-0.174	NEUTRAL	NA	4	"EVA1A,GCFC2,MRPL19,TACR1"
TCGA.G4.6294	2	75526488	77989463	831	-0.0166	NEUTRAL	NA	4	"EVA1A,GCFC2,LRRTM4,MRPL19"
TCGA.CK.5914.01A	2	75879258	75933607	20	0.0111	NEUTRAL	NA	2	"GCFC2,MRPL19"
TCGA.AA.A010.01A	2	75879258	79914610	46	-0.1078	NEUTRAL	NA	8	"CTNNA2,GCFC2,LRRTM4,MRPL19,REG1A,REG1B,REG3A,REG3G"
TCGA.AZ.4684.01A	2	75879258	84897401	111	0.3607	NEUTRAL	NA	11	"CTNNA2,DNAH6,GCFC2,LRRTM1,LRRTM4,MRPL19,REG1A,REG1B,REG3A,REG3G,SUCLG1"
TCGA.AG.A00C.01A	2	75891755	75907278	6	-0.1872	NEUTRAL	NA	1	GCFC2
TCGA.AA.A00N.01A	2	75891755	75917043	9	-0.1745	NEUTRAL	NA	1	GCFC2
TCGA.AG.3909.01A	2	75891755	75919056	11	-0.0345	NEUTRAL	NA	1	GCFC2
TCGA.AA.3811	2	75906623	79142386	933	-0.3302	NEUTRAL	NA	2	"GCFC2,LRRTM4"
TCGA.AG.A00C.01A	2	75914906	75933607	10	0.2849	NEUTRAL	NA	1	GCFC2
TCGA.AA.3982	2	75977800	84460864	2603	-0.4472	NEUTRAL	NA	7	"CTNNA2,LRRTM1,LRRTM4,REG1A,REG1B,REG3A,REG3G"
TCGA.4N.A93T	2	76173492	119834826	9756	0.0079	NEUTRAL	NA	199	Too-Many
TCGA.AA.3844	2	76216928	84385745	2523	-0.5113	NEUTRAL	NA	7	"CTNNA2,LRRTM1,LRRTM4,REG1A,REG1B,REG3A,REG3G"
TCGA.AA.3867	2	76228097	77730013	495	-0.0861	NEUTRAL	NA	1	LRRTM4
TCGA.DM.A1DA	2	76248856	242996588	45493	0.2677	NEUTRAL	NA	802	Too-Many
TCGA.AD.6965	2	76524247	76567206	16	-0.3383	NEUTRAL	NA	0	None
TCGA.EI.7002	2	76559319	193219503	30299	-0.0244	NEUTRAL	NA	479	Too-Many
TCGA.AD.6965	2	76567257	78023731	450	-0.002	NEUTRAL	NA	1	LRRTM4
TCGA.DY.A1DG	2	76641790	242996588	45372	0	NEUTRAL	NA	802	Too-Many
TCGA.AG.A00C.01A	2	76975842	80101195	27	-0.4307	NEUTRAL	NA	6	"CTNNA2,LRRTM4,REG1A,REG1B,REG3A,REG3G"
TCGA.AA.A00F.01A	2	76975842	81421174	25	-0.3028	NEUTRAL	NA	7	"CTNNA2,LRRTM1,LRRTM4,REG1A,REG1B,REG3A,REG3G"
TCGA.AA.3930.01A	2	76975842	84780012	64	-0.1776	NEUTRAL	NA	9	"CTNNA2,DNAH6,LRRTM1,LRRTM4,REG1A,REG1B,REG3A,REG3G,SUCLG1"
TCGA.AA.3967.01A	2	76975842	85536134	87	-0.2135	NEUTRAL	NA	13	"CTNNA2,DNAH6,KCMF1,LRRTM1,LRRTM4,REG1A,REG1B,REG3A,REG3G,SUCLG1,TCF7L1,TMSB10,TRABD2A"
TCGA.AG.3909.01A	2	76975842	85628650	117	0.375	NEUTRAL	NA	17	"CAPG,CTNNA2,DNAH6,ELMOD3,KCMF1,LRRTM1,LRRTM4,REG1A,REG1B,REG3A,REG3G,RETSAT,SUCLG1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AA.3544	2	77093690	95553690	3174	0.0532	NEUTRAL	NA	55	"ATOH8,C2orf68,CAPG,CD8A,CD8B,CHMP3,CTNNA2,DNAH6,EIF2AK3,ELMOD3,FABP1,FOXI3,GGCX,GNLY,IMMT,KCMF1,KDM3A,KRCC1,LRRTM1,LRRTM4,MAT2A,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,REG1A,REG1B,REG3A,REG3G,RETSAT,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,RPIA,SFTPB,SH2D6,SMYD1,ST3GAL5,SUCLG1,TCF7L1,TEKT4,TEX37,TGOLN2,THNSL2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.G4.6626	2	77349800	77606866	63	-0.0622	NEUTRAL	NA	1	LRRTM4
TCGA.AZ.6606	2	77531527	78100673	157	-0.3958	NEUTRAL	NA	1	LRRTM4
TCGA.G4.6626	2	77674265	77855706	60	-0.3487	NEUTRAL	NA	1	LRRTM4
TCGA.AA.3867	2	77747512	117752003	8457	0.1421	NEUTRAL	NA	194	Too-Many
TCGA.AG.3592	2	77854680	243048759	45002	-0.0089	NEUTRAL	NA	801	Too-Many
TCGA.AG.4008	2	77917058	109571439	6429	-0.0061	NEUTRAL	NA	152	Too-Many
TCGA.CM.5349	2	77928313	114186946	7507	-0.0269	NEUTRAL	NA	187	Too-Many
TCGA.DM.A0X9	2	77990823	78226050	66	-0.1426	NEUTRAL	NA	0	None
TCGA.D5.5538	2	78052196	78174776	36	0.1114	NEUTRAL	NA	0	None
TCGA.EI.7004	2	78052196	91849289	2881	-0.37	NEUTRAL	NA	53	"ATOH8,C2orf68,CAPG,CD8A,CD8B,CHMP3,CTNNA2,DNAH6,EIF2AK3,ELMOD3,FABP1,FOXI3,GGCX,GNLY,IMMT,KCMF1,KDM3A,KRCC1,LRRTM1,MAT2A,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,REG1A,REG1B,REG3A,REG3G,RETSAT,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,RPIA,SFTPB,SH2D6,SMYD1,ST3GAL5,SUCLG1,TCF7L1,TEX37,TGOLN2,THNSL2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.AD.6965	2	78094034	243048759	44843	0.0266	NEUTRAL	NA	801	Too-Many
TCGA.AZ.6606	2	78101276	243048759	44781	-0.0137	NEUTRAL	NA	801	Too-Many
TCGA.G4.6626	2	78179614	80238530	841	-0.0439	NEUTRAL	NA	5	"CTNNA2,REG1A,REG1B,REG3A,REG3G"
TCGA.D5.6532	2	78188450	243048759	44872	-0.0085	NEUTRAL	NA	801	Too-Many
TCGA.QL.A97D	2	78259922	169258410	22987	-0.1071	NEUTRAL	NA	355	Too-Many
TCGA.AA.3529	2	78313902	78733364	92	-0.5026	NEUTRAL	NA	0	None
TCGA.AA.3866	2	78477997	243048759	44797	0.035	NEUTRAL	NA	801	Too-Many
TCGA.G4.6294	2	78477997	243048759	44829	-0.0299	NEUTRAL	NA	801	Too-Many
TCGA.A6.4105	2	78496522	78734896	53	-0.285	NEUTRAL	NA	0	None
TCGA.DM.A0X9	2	78496522	243048759	44811	-0.0046	NEUTRAL	NA	801	Too-Many
TCGA.EI.6508	2	78677913	81888751	1186	-0.0021	NEUTRAL	NA	6	"CTNNA2,LRRTM1,REG1A,REG1B,REG3A,REG3G"
TCGA.AA.3529	2	78734896	117388905	8126	-0.0188	NEUTRAL	NA	193	Too-Many
TCGA.A6.4105	2	78735782	243048759	44778	0.1127	NEUTRAL	NA	801	Too-Many
TCGA.D5.5538	2	78752269	145931461	16747	-0.0053	NEUTRAL	NA	285	Too-Many
TCGA.AA.3679	2	79000456	141885490	15553	0.3387	NEUTRAL	NA	281	Too-Many
TCGA.AA.3941	2	79113588	80791000	818	-0.2842	NEUTRAL	NA	6	"CTNNA2,LRRTM1,REG1A,REG1B,REG3A,REG3G"
TCGA.AA.3811	2	79142711	80791000	800	-0.039	NEUTRAL	NA	6	"CTNNA2,LRRTM1,REG1A,REG1B,REG3A,REG3G"
TCGA.DM.A1HB	2	79226322	79556425	173	-0.1011	NEUTRAL	NA	4	"REG1A,REG1B,REG3A,REG3G"
TCGA.A6.2677	2	79493975	82325530	914	0.0066	NEUTRAL	NA	2	"CTNNA2,LRRTM1"
TCGA.DM.A1HB	2	79599822	80081181	234	-0.0908	NEUTRAL	NA	1	CTNNA2
TCGA.AA.A00D.01A	2	79878636	81421174	10	-0.0152	NEUTRAL	NA	2	"CTNNA2,LRRTM1"
TCGA.DM.A1HB	2	80087526	80299353	130	-0.0776	NEUTRAL	NA	1	CTNNA2
TCGA.AG.A00C.01A	2	80136725	80540632	3	0.1955	NEUTRAL	NA	2	"CTNNA2,LRRTM1"
TCGA.AA.3519	2	80228739	243048759	44069	0.009	NEUTRAL	NA	797	Too-Many
TCGA.G4.6626	2	80241462	80523699	118	-0.318	NEUTRAL	NA	1	CTNNA2
TCGA.DM.A1HB	2	80331811	200008893	29971	-0.025	NEUTRAL	NA	493	Too-Many
TCGA.AF.2693	2	80397927	125683563	10116	-0.0139	NEUTRAL	NA	213	Too-Many
TCGA.G4.6626	2	80524177	92285929	1895	-0.0392	NEUTRAL	NA	49	"ATOH8,C2orf68,CAPG,CD8A,CD8B,CHMP3,CTNNA2,DNAH6,EIF2AK3,ELMOD3,FABP1,FOXI3,GGCX,GNLY,IMMT,KCMF1,KDM3A,KRCC1,LRRTM1,MAT2A,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RETSAT,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,RPIA,SFTPB,SH2D6,SMYD1,ST3GAL5,SUCLG1,TCF7L1,TEX37,TGOLN2,THNSL2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.AA.A010.01A	2	80620276	85663548	163	0.2657	NEUTRAL	NA	12	"CAPG,CTNNA2,DNAH6,ELMOD3,KCMF1,RETSAT,SH2D6,SUCLG1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AG.A00C.01A	2	80620276	85663548	85	-0.1454	NEUTRAL	NA	12	"CAPG,CTNNA2,DNAH6,ELMOD3,KCMF1,RETSAT,SH2D6,SUCLG1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AA.3811	2	80793168	84433640	872	-0.4127	NEUTRAL	NA	1	CTNNA2
TCGA.AA.3972	2	81060703	243048759	43738	0.0479	NEUTRAL	NA	795	Too-Many
TCGA.EI.6881	2	81061500	243048759	43686	0.0127	NEUTRAL	NA	795	Too-Many
TCGA.EI.6508	2	81967941	102367561	2791	-0.0061	NEUTRAL	NA	115	Too-Many
TCGA.AA.3850	2	84350916	84448938	37	-0.12475	NEUTRAL	NA	0	None
TCGA.AA.3941	2	84385745	85024730	167	0.0046	NEUTRAL	NA	2	"DNAH6,SUCLG1"
TCGA.AA.3844	2	84407063	103420850	2639	0.0456	NEUTRAL	NA	125	Too-Many
TCGA.A6.2677	2	84432299	243048759	39412	0.0352	NEUTRAL	NA	795	Too-Many
TCGA.AA.3811	2	84433755	103593539	2658	0.2098	NEUTRAL	NA	125	Too-Many
TCGA.AA.3850	2	84460864	85024730	143	0.00805	NEUTRAL	NA	2	"DNAH6,SUCLG1"
TCGA.AA.3982	2	84464226	84992657	138	-0.0655	NEUTRAL	NA	2	"DNAH6,SUCLG1"
TCGA.AA.A00D.01A	2	84650782	84811101	17	-0.5084	NEUTRAL	NA	2	"DNAH6,SUCLG1"
TCGA.AA.A00Q.01A	2	84650782	84846762	18	-0.3914	NEUTRAL	NA	2	"DNAH6,SUCLG1"
TCGA.AA.A00F.01A	2	84650782	95772089	286	0.0167	NEUTRAL	NA	50	"ATOH8,C2orf68,CAPG,CD8A,CD8B,CHMP3,DNAH6,EIF2AK3,ELMOD3,FABP1,FOXI3,GGCX,GNLY,IMMT,KCMF1,KDM3A,KRCC1,MAL,MAT2A,MRPL35,MRPS5,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RETSAT,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,RPIA,SFTPB,SH2D6,SMYD1,ST3GAL5,SUCLG1,TCF7L1,TEKT4,TEX37,TGOLN2,THNSL2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.CA.5254	2	84709214	116507472	6014	-0.0247	NEUTRAL	NA	186	Too-Many
TCGA.AA.3930.01A	2	84784822	85895173	194	0.2036	NEUTRAL	NA	19	"C2orf68,CAPG,DNAH6,ELMOD3,GGCX,KCMF1,MAT2A,RETSAT,RNF181,SFTPB,SH2D6,TCF7L1,TGOLN2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.AA.A00L.01A	2	84846762	85066234	14	0.1891	NEUTRAL	NA	2	"DNAH6,TRABD2A"
TCGA.AA.A00D.01A	2	84846762	85360875	17	0.0934	NEUTRAL	NA	5	"DNAH6,KCMF1,TCF7L1,TMSB10,TRABD2A"
TCGA.AZ.4684.01A	2	84899449	86716404	286	-0.0764	NEUTRAL	NA	28	"ATOH8,C2orf68,CAPG,DNAH6,ELMOD3,GGCX,GNLY,IMMT,KCMF1,KDM3A,MAT2A,MRPL35,POLR1A,PTCD3,REEP1,RETSAT,RNF181,SFTPB,SH2D6,ST3GAL5,TCF7L1,TGOLN2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.AA.3982	2	85009023	88847402	714	0.2427	NEUTRAL	NA	44	"ATOH8,C2orf68,CAPG,CD8A,CD8B,CHMP3,DNAH6,ELMOD3,FABP1,FOXI3,GGCX,GNLY,IMMT,KCMF1,KDM3A,KRCC1,MAT2A,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RETSAT,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,SFTPB,SH2D6,SMYD1,ST3GAL5,TCF7L1,TEX37,TGOLN2,THNSL2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.AA.A00L.01A	2	85097328	99949441	574	-0.3471	NEUTRAL	NA	98	"ACTR1B,ADRA2B,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,ATOH8,C2orf15,C2orf68,CAPG,CD8A,CD8B,CHMP3,CIAO1,CNGA3,CNNM3,CNNM4,COA5,COX5B,DUSP2,EIF2AK3,ELMOD3,FABP1,FAHD2A,FAHD2B,FAM178B,FER1L5,FOXI3,GGCX,GNLY,GPAT2,IMMT,INPP4A,ITPRIPL1,KANSL3,KCMF1,KCNIP3,KDM3A,KIAA1211L,KRCC1,LIPT1,LMAN2L,LYG1,LYG2,MAL,MAT2A,MGAT4A,MITD1,MRPL30,MRPL35,MRPS5,NCAPH,NEURL3,PLGLB1,PLGLB2,POLR1A,PROM2,PTCD3,REEP1,RETSAT,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,RPIA,SEMA4C,SFTPB,SH2D6,SMYD1,SNRNP200,ST3GAL5,STARD7,TCF7L1,TEKT4,TEX37,TGOLN2,THNSL2,TMEM127,TMEM131,TMEM150A,TMSB10,TRABD2A,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,USP39,VAMP5,VAMP8,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.AG.A01W.01A	2	85124149	85457947	38	-0.2543	NEUTRAL	NA	3	"KCMF1,TCF7L1,TMSB10"
TCGA.AA.A00Q.01A	2	85133131	97217158	405	-0.3458	NEUTRAL	NA	66	"ADRA2B,ARID5A,ASTL,ATOH8,C2orf68,CAPG,CD8A,CD8B,CHMP3,CIAO1,DUSP2,EIF2AK3,ELMOD3,FABP1,FAHD2A,FOXI3,GGCX,GNLY,GPAT2,IMMT,ITPRIPL1,KCMF1,KCNIP3,KDM3A,KRCC1,MAL,MAT2A,MRPL35,MRPS5,NCAPH,NEURL3,PLGLB1,PLGLB2,POLR1A,PROM2,PTCD3,REEP1,RETSAT,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,RPIA,SFTPB,SH2D6,SMYD1,SNRNP200,ST3GAL5,STARD7,TCF7L1,TEKT4,TEX37,TGOLN2,THNSL2,TMEM127,TMEM150A,TMSB10,TRIM43,TRIM43B,USP39,VAMP5,VAMP8,ZNF2,ZNF514"
TCGA.AA.A00O.01A	2	85254961	179398156	4181	0.0217	NEUTRAL	NA	419	Too-Many
TCGA.AG.A01W.01A	2	85475464	85748685	73	-0.1927	NEUTRAL	NA	6	"CAPG,ELMOD3,RETSAT,SH2D6,TCF7L1,TGOLN2"
TCGA.AG.3906.01A	2	85577126	85894760	82	0.287	NEUTRAL	NA	13	"C2orf68,CAPG,ELMOD3,GGCX,MAT2A,RETSAT,RNF181,SFTPB,SH2D6,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AG.A016.01A	2	85584272	87204968	215	-0.0923	NEUTRAL	NA	29	"ATOH8,C2orf68,CAPG,CD8A,CD8B,CHMP3,ELMOD3,GGCX,GNLY,IMMT,KDM3A,MAT2A,MRPL35,POLR1A,PTCD3,REEP1,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RNF181,SFTPB,SH2D6,ST3GAL5,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AA.3967.01A	2	85604415	85628650	10	-0.0604	NEUTRAL	NA	2	"CAPG,ELMOD3"
TCGA.AA.A01Q.01A	2	85616826	85875821	63	-0.2775	NEUTRAL	NA	11	"C2orf68,CAPG,ELMOD3,GGCX,MAT2A,RNF181,SH2D6,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AG.4009.01A	2	85662477	85787887	23	-0.462	NEUTRAL	NA	3	"GGCX,MAT2A,SH2D6"
TCGA.AA.A00D.01A	2	85663548	85892365	54	-0.197	NEUTRAL	NA	10	"C2orf68,GGCX,MAT2A,RNF181,SFTPB,SH2D6,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.CK.5914.01A	2	85768148	85852615	45	-0.4184	NEUTRAL	NA	8	"C2orf68,GGCX,MAT2A,RNF181,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AG.A01W.01A	2	85775012	86109192	18	0.2251	NEUTRAL	NA	11	"ATOH8,C2orf68,GGCX,GNLY,RNF181,SFTPB,ST3GAL5,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AF.3914.01A	2	85780010	85787887	8	0.2595	NEUTRAL	NA	1	GGCX
TCGA.AA.A010.01A	2	85783278	85852615	29	-0.3969	NEUTRAL	NA	7	"C2orf68,GGCX,RNF181,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AA.A02W.01A	2	85836040	86255670	38	0.1265	NEUTRAL	NA	7	"ATOH8,C2orf68,GNLY,POLR1A,SFTPB,ST3GAL5,USP39"
TCGA.AF.3914.01A	2	85843281	176948027	4153	0.1298	NEUTRAL	NA	382	Too-Many
TCGA.AG.4009.01A	2	85846280	85889112	14	0.1014	NEUTRAL	NA	2	"SFTPB,USP39"
TCGA.AG.A032.01A	2	85846280	242813848	8106	0.1504	NEUTRAL	NA	777	Too-Many
TCGA.AG.3909.01A	2	85863118	86292356	50	0.0373	NEUTRAL	NA	6	"ATOH8,GNLY,POLR1A,SFTPB,ST3GAL5,USP39"
TCGA.A6.3808.01A	2	85863118	87049378	164	0.1859	NEUTRAL	NA	17	"ATOH8,CD8A,CD8B,CHMP3,GNLY,IMMT,KDM3A,MRPL35,POLR1A,PTCD3,REEP1,RMND5A,RNF103,RNF103-CHMP3,SFTPB,ST3GAL5,USP39"
TCGA.AG.A00C.01A	2	85872034	89265733	221	-0.0224	NEUTRAL	NA	29	"ATOH8,CD8A,CD8B,CHMP3,EIF2AK3,FABP1,FOXI3,GNLY,IMMT,KDM3A,KRCC1,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RPIA,SFTPB,SMYD1,ST3GAL5,TEX37,THNSL2,USP39"
TCGA.AA.A00N.01A	2	85888541	86393591	90	0.3688	NEUTRAL	NA	7	"ATOH8,GNLY,IMMT,POLR1A,PTCD3,SFTPB,ST3GAL5"
TCGA.AA.A01Q.01A	2	85888541	95775612	181	0.1123	NEUTRAL	NA	31	"ATOH8,CD8A,CD8B,CHMP3,EIF2AK3,FABP1,FOXI3,GNLY,IMMT,KDM3A,KRCC1,MAL,MRPL35,MRPS5,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RPIA,SFTPB,SMYD1,ST3GAL5,TEKT4,TEX37,THNSL2"
TCGA.AA.3967.01A	2	85894760	122038649	1734	0.0274	NEUTRAL	NA	188	Too-Many
TCGA.AG.3891.01A	2	85921471	86013912	8	-0.3363	NEUTRAL	NA	2	"ATOH8,GNLY"
TCGA.AA.3930.01A	2	85921471	86079936	13	-0.1614	NEUTRAL	NA	3	"ATOH8,GNLY,ST3GAL5"
TCGA.AG.4009.01A	2	85921471	86094636	15	-0.1074	NEUTRAL	NA	3	"ATOH8,GNLY,ST3GAL5"
TCGA.AG.3906.01A	2	85921471	88427404	162	0.0438	NEUTRAL	NA	22	"ATOH8,CD8A,CD8B,CHMP3,FABP1,GNLY,IMMT,KDM3A,KRCC1,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,SMYD1,ST3GAL5"
TCGA.CK.5914.01A	2	85981296	86683873	100	0.3051	NEUTRAL	NA	8	"ATOH8,IMMT,KDM3A,MRPL35,POLR1A,PTCD3,REEP1,ST3GAL5"
TCGA.A6.6653	2	86001627	184128520	25387	-0.0095	NEUTRAL	NA	418	Too-Many
TCGA.AG.3891.01A	2	86067237	88888231	179	0.0364	NEUTRAL	NA	24	"CD8A,CD8B,CHMP3,EIF2AK3,FABP1,FOXI3,IMMT,KDM3A,KRCC1,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,SMYD1,ST3GAL5,TEX37,THNSL2"
TCGA.AA.3850	2	86079213	90262897	482	0.26245	NEUTRAL	NA	25	"CD8A,CD8B,CHMP3,EIF2AK3,FABP1,FOXI3,IMMT,KDM3A,KRCC1,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RPIA,SMYD1,ST3GAL5,TEX37,THNSL2"
TCGA.AA.3930.01A	2	86088273	86354989	49	0.366	NEUTRAL	NA	3	"POLR1A,PTCD3,ST3GAL5"
TCGA.AG.A01W.01A	2	86110784	86362744	77	-0.1751	NEUTRAL	NA	3	"POLR1A,PTCD3,ST3GAL5"
TCGA.AA.A02W.01A	2	86260732	242813848	8103	0.0423	NEUTRAL	NA	772	Too-Many
TCGA.AG.4009.01A	2	86307911	86509232	55	0.1181	NEUTRAL	NA	5	"IMMT,MRPL35,POLR1A,PTCD3,REEP1"
TCGA.AA.3930.01A	2	86357719	128381621	1977	0.0759	NEUTRAL	NA	195	Too-Many
TCGA.AA.A00D.01A	2	86371384	86683873	21	-0.1154	NEUTRAL	NA	4	"IMMT,KDM3A,MRPL35,REEP1"
TCGA.AG.3909.01A	2	86406509	86683873	19	-0.3735	NEUTRAL	NA	4	"IMMT,KDM3A,MRPL35,REEP1"
TCGA.AG.A01W.01A	2	86418586	86703318	32	0.296	NEUTRAL	NA	4	"IMMT,KDM3A,MRPL35,REEP1"
TCGA.AG.4009.01A	2	86669123	86697280	9	-0.4129	NEUTRAL	NA	1	KDM3A
TCGA.AA.A010.01A	2	86701914	86790352	18	-0.1233	NEUTRAL	NA	3	"CHMP3,KDM3A,RNF103-CHMP3"
TCGA.AG.4009.01A	2	86701914	86790352	18	-0.026	NEUTRAL	NA	3	"CHMP3,KDM3A,RNF103-CHMP3"
TCGA.AG.3909.01A	2	86756304	87085139	25	-0.3887	NEUTRAL	NA	6	"CD8A,CD8B,CHMP3,RMND5A,RNF103,RNF103-CHMP3"
TCGA.CK.5914.01A	2	86769307	86849794	7	-0.4512	NEUTRAL	NA	3	"CHMP3,RNF103,RNF103-CHMP3"
TCGA.AG.A01W.01A	2	86776446	88208520	50	-0.1019	NEUTRAL	NA	10	"CD8A,CD8B,CHMP3,PLGLB1,PLGLB2,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3"
TCGA.AG.4009.01A	2	86830935	88367332	28	-0.4845	NEUTRAL	NA	11	"CD8A,CD8B,KRCC1,PLGLB1,PLGLB2,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,SMYD1"
TCGA.AA.A00D.01A	2	86830935	88861760	52	-0.4108	NEUTRAL	NA	16	"CD8A,CD8B,EIF2AK3,FABP1,FOXI3,KRCC1,PLGLB1,PLGLB2,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,SMYD1,TEX37,THNSL2"
TCGA.AZ.4684.01A	2	86849794	98169636	459	-0.0381	NEUTRAL	NA	51	"ADRA2B,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,CD8A,CD8B,CIAO1,CNNM3,CNNM4,DUSP2,EIF2AK3,FABP1,FAHD2A,FAHD2B,FAM178B,FER1L5,FOXI3,GPAT2,ITPRIPL1,KANSL3,KCNIP3,KRCC1,LMAN2L,MAL,MRPS5,NCAPH,NEURL3,PLGLB1,PLGLB2,PROM2,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,RPIA,SEMA4C,SMYD1,SNRNP200,STARD7,TEKT4,TEX37,THNSL2,TMEM127,TRIM43,TRIM43B,ZNF2,ZNF514"
TCGA.CK.5914.01A	2	87000405	87069343	8	-0.3489	NEUTRAL	NA	3	"CD8A,CD8B,RMND5A"
TCGA.AA.A010.01A	2	87015577	88427404	36	0.1574	NEUTRAL	NA	9	"CD8A,CD8B,FABP1,KRCC1,PLGLB1,PLGLB2,RGPD1,RGPD2,SMYD1"
TCGA.AA.A00N.01A	2	87140952	88402524	18	0.2647	NEUTRAL	NA	6	"KRCC1,PLGLB1,PLGLB2,RGPD1,RGPD2,SMYD1"
TCGA.AG.3909.01A	2	87201272	89246782	67	0.3125	NEUTRAL	NA	12	"EIF2AK3,FABP1,FOXI3,KRCC1,PLGLB1,PLGLB2,RGPD1,RGPD2,RPIA,SMYD1,TEX37,THNSL2"
TCGA.A6.3808.01A	2	88125131	89196747	63	0.3584	NEUTRAL	NA	10	"EIF2AK3,FABP1,FOXI3,KRCC1,RGPD1,RGPD2,RPIA,SMYD1,TEX37,THNSL2"
TCGA.AG.A01W.01A	2	88263306	89108175	53	0.1468	NEUTRAL	NA	9	"EIF2AK3,FABP1,FOXI3,KRCC1,RGPD1,RPIA,SMYD1,TEX37,THNSL2"
TCGA.G4.6295	2	88295231	114186946	4806	0.3041	NEUTRAL	NA	142	Too-Many
TCGA.AA.3558	2	88296340	112068776	4229	-0.0368	NEUTRAL	NA	119	Too-Many
TCGA.AA.3693	2	88371294	101096902	1046	-0.0318	NEUTRAL	NA	66	"ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,C2orf15,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,COA5,COX5B,DUSP2,EIF2AK3,EIF5B,FABP1,FAHD2A,FAHD2B,FAM178B,FER1L5,FOXI3,GPAT2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAL,MGAT4A,MITD1,MRPL30,MRPS5,NCAPH,NEURL3,NMS,PROM2,REV1,RPIA,SEMA4C,SMYD1,SNRNP200,STARD7,TEKT4,TEX37,THNSL2,TMEM127,TMEM131,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.AG.A016.01A	2	88383788	88427404	13	-0.096	NEUTRAL	NA	2	"FABP1,SMYD1"
TCGA.AG.4009.01A	2	88383788	96691894	193	0.027	NEUTRAL	NA	18	"EIF2AK3,FABP1,FAHD2A,FOXI3,GPAT2,KCNIP3,MAL,MRPS5,PROM2,RPIA,SMYD1,TEKT4,TEX37,THNSL2,TRIM43,TRIM43B,ZNF2,ZNF514"
TCGA.D5.6929	2	88443877	205844258	30158	0.177	NEUTRAL	NA	492	Too-Many
TCGA.AG.3906.01A	2	88472633	88485366	7	-0.4827	NEUTRAL	NA	1	THNSL2
TCGA.CM.6165.01A	2	88472633	88485366	7	-0.5107	NEUTRAL	NA	1	THNSL2
TCGA.CK.5914.01A	2	88472633	88861760	15	0.0445	NEUTRAL	NA	4	"EIF2AK3,FOXI3,TEX37,THNSL2"
TCGA.AA.A00N.01A	2	88472633	89049456	38	0.0126	NEUTRAL	NA	5	"EIF2AK3,FOXI3,RPIA,TEX37,THNSL2"
TCGA.AG.A016.01A	2	88482177	89049456	31	-0.0179	NEUTRAL	NA	5	"EIF2AK3,FOXI3,RPIA,TEX37,THNSL2"
TCGA.AA.A01F.01A	2	88482177	96804048	93	0.1217	NEUTRAL	NA	18	"ADRA2B,ASTL,EIF2AK3,FAHD2A,FOXI3,GPAT2,KCNIP3,MAL,MRPS5,PROM2,RPIA,TEKT4,TEX37,THNSL2,TRIM43,TRIM43B,ZNF2,ZNF514"
TCGA.CM.6165.01A	2	88747709	170550708	3863	0.0542	NEUTRAL	NA	318	Too-Many
TCGA.AG.3906.01A	2	88825087	88858365	5	0.3493	NEUTRAL	NA	2	"EIF2AK3,TEX37"
TCGA.AA.A010.01A	2	88825087	88874157	8	-0.3202	NEUTRAL	NA	2	"EIF2AK3,TEX37"
TCGA.AG.3906.01A	2	88861760	89340072	44	-0.1063	NEUTRAL	NA	2	"EIF2AK3,RPIA"
TCGA.AA.3941	2	88880063	90240472	53	0.0264	NEUTRAL	NA	2	"EIF2AK3,RPIA"
TCGA.AA.3982	2	88880063	90242075	54	-0.0949	NEUTRAL	NA	2	"EIF2AK3,RPIA"
TCGA.AG.3891.01A	2	88889920	95773909	106	-0.2955	NEUTRAL	NA	5	"EIF2AK3,MAL,MRPS5,RPIA,TEKT4"
TCGA.CK.5914.01A	2	88913205	89161340	17	0.2353	NEUTRAL	NA	2	"EIF2AK3,RPIA"
TCGA.AA.A00D.01A	2	88913205	95818831	29	-0.2935	NEUTRAL	NA	6	"EIF2AK3,MAL,MRPS5,RPIA,TEKT4,ZNF514"
TCGA.AA.A010.01A	2	88926438	95783554	102	0.2122	NEUTRAL	NA	5	"EIF2AK3,MAL,MRPS5,RPIA,TEKT4"
TCGA.AG.3727	2	89125487	91925460	23	-0.5129	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	89165742	89910993	54	-0.0476	NEUTRAL	NA	0	None
TCGA.AG.A02X.01A	2	89185015	89476528	27	-0.4133	NEUTRAL	NA	0	None
TCGA.AG.A015.01A	2	89185015	97009804	201	-0.1907	NEUTRAL	NA	20	"ADRA2B,ASTL,CIAO1,DUSP2,FAHD2A,GPAT2,ITPRIPL1,KCNIP3,MAL,MRPS5,NCAPH,PROM2,SNRNP200,STARD7,TEKT4,TMEM127,TRIM43,TRIM43B,ZNF2,ZNF514"
TCGA.AA.A01C.01A	2	89185015	136875547	2064	0.0506	NEUTRAL	NA	223	Too-Many
TCGA.AG.A00C.01A	2	89265928	95537333	64	-0.2963	NEUTRAL	NA	1	TEKT4
TCGA.AG.A016.01A	2	89291877	242813848	8047	-0.136	NEUTRAL	NA	748	Too-Many
TCGA.AG.3906.01A	2	89399768	95783554	72	-0.2538	NEUTRAL	NA	3	"MAL,MRPS5,TEKT4"
TCGA.AG.A02X.01A	2	89521127	120206214	1355	-0.2897	NEUTRAL	NA	151	Too-Many
TCGA.CK.5914.01A	2	90077745	90108734	4	0.1171	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	2	90259927	95943615	35	-0.2135	NEUTRAL	NA	6	"MAL,MRPS5,PROM2,TEKT4,ZNF2,ZNF514"
TCGA.AA.3982	2	91727979	103585663	1734	0.133	NEUTRAL	NA	78	"ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,C2orf15,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,DUSP2,EIF5B,FAHD2A,FAHD2B,FAM178B,FER1L5,GPAT2,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAL,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS5,NCAPH,NEURL3,NMS,NPAS2,PDCL3,PROM2,REV1,RFX8,RNF149,RPL31,SEMA4C,SLC9A2,SLC9A4,SNRNP200,STARD7,TBC1D8,TEKT4,TMEM127,TMEM131,TMEM182,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.5M.AATA	2	91849289	243048759	42047	0.0264	NEUTRAL	NA	748	Too-Many
TCGA.AA.3872	2	91925460	103593539	1737	0.1535	NEUTRAL	NA	78	"ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,C2orf15,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,DUSP2,EIF5B,FAHD2A,FAHD2B,FAM178B,FER1L5,GPAT2,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAL,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS5,NCAPH,NEURL3,NMS,NPAS2,PDCL3,PROM2,REV1,RFX8,RNF149,RPL31,SEMA4C,SLC9A2,SLC9A4,SNRNP200,STARD7,TBC1D8,TEKT4,TMEM127,TMEM131,TMEM182,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.AA.3841	2	91925460	105512924	2235	0.0031	NEUTRAL	NA	79	"ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,C2orf15,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,DUSP2,EIF5B,FAHD2A,FAHD2B,FAM178B,FER1L5,GPAT2,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAL,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS5,NCAPH,NEURL3,NMS,NPAS2,PDCL3,POU3F3,PROM2,REV1,RFX8,RNF149,RPL31,SEMA4C,SLC9A2,SLC9A4,SNRNP200,STARD7,TBC1D8,TEKT4,TMEM127,TMEM131,TMEM182,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.EI.7004	2	91925460	109065918	3461	-0.0294	NEUTRAL	NA	95	"ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,C2orf15,C2orf40,C2orf49,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,DUSP2,EIF5B,FAHD2A,FAHD2B,FAM178B,FER1L5,FHL2,GCC2,GPAT2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAL,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS5,MRPS9,NCAPH,NCK2,NEURL3,NMS,NPAS2,PDCL3,POU3F3,PROM2,REV1,RFX8,RGPD3,RGPD4,RNF149,RPL31,SEMA4C,SLC5A7,SLC9A2,SLC9A4,SNRNP200,ST6GAL2,STARD7,SULT1C2,SULT1C3,SULT1C4,TBC1D8,TEKT4,TGFBRAP1,TMEM127,TMEM131,TMEM182,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,UXS1,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.NH.A50U	2	91925460	200176042	28620	-0.0049	NEUTRAL	NA	445	Too-Many
TCGA.CK.5913	2	91925460	243048759	41995	-0.0102	NEUTRAL	NA	748	Too-Many
TCGA.D5.6926	2	91925460	243048759	41982	0.0054	NEUTRAL	NA	748	Too-Many
TCGA.AG.3727	2	92275026	121675237	6823	-0.008	NEUTRAL	NA	159	Too-Many
TCGA.DC.6160.01A	2	94903409	242491101	9141	0.0692	NEUTRAL	NA	738	Too-Many
TCGA.AG.A01W.01A	2	95308419	95311370	4	-0.0224	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	95339784	96326369	81	0.3697	NEUTRAL	NA	10	"FAHD2A,KCNIP3,MAL,MRPS5,PROM2,TEKT4,TRIM43,TRIM43B,ZNF2,ZNF514"
TCGA.AA.3850	2	95341387	103420850	1703	0.20865	NEUTRAL	NA	78	"ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,C2orf15,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,DUSP2,EIF5B,FAHD2A,FAHD2B,FAM178B,FER1L5,GPAT2,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAL,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS5,NCAPH,NEURL3,NMS,NPAS2,PDCL3,PROM2,REV1,RFX8,RNF149,RPL31,SEMA4C,SLC9A2,SLC9A4,SNRNP200,STARD7,TBC1D8,TEKT4,TMEM127,TMEM131,TMEM182,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.AA.3941	2	95341387	103583056	1726	0.2922	NEUTRAL	NA	78	"ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,C2orf15,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,DUSP2,EIF5B,FAHD2A,FAHD2B,FAM178B,FER1L5,GPAT2,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAL,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS5,NCAPH,NEURL3,NMS,NPAS2,PDCL3,PROM2,REV1,RFX8,RNF149,RPL31,SEMA4C,SLC9A2,SLC9A4,SNRNP200,STARD7,TBC1D8,TEKT4,TMEM127,TMEM131,TMEM182,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.DM.A28F	2	95341387	133263411	9982	0.321	NEUTRAL	NA	208	Too-Many
TCGA.CK.5914.01A	2	95537333	97217158	173	0.1577	NEUTRAL	NA	22	"ADRA2B,ARID5A,ASTL,CIAO1,DUSP2,FAHD2A,GPAT2,ITPRIPL1,KCNIP3,MAL,MRPS5,NCAPH,NEURL3,PROM2,SNRNP200,STARD7,TEKT4,TMEM127,TRIM43,TRIM43B,ZNF2,ZNF514"
TCGA.AG.A00C.01A	2	95539212	95845854	25	0.2494	NEUTRAL	NA	5	"MAL,MRPS5,TEKT4,ZNF2,ZNF514"
TCGA.A6.3808.01A	2	95542248	96076561	59	-0.271	NEUTRAL	NA	8	"FAHD2A,KCNIP3,MAL,MRPS5,PROM2,TEKT4,ZNF2,ZNF514"
TCGA.AA.3861.01A	2	95542248	96076561	56	0.0689	NEUTRAL	NA	8	"FAHD2A,KCNIP3,MAL,MRPS5,PROM2,TEKT4,ZNF2,ZNF514"
TCGA.AA.3862.01A	2	95542248	96076561	57	0.0485	NEUTRAL	NA	8	"FAHD2A,KCNIP3,MAL,MRPS5,PROM2,TEKT4,ZNF2,ZNF514"
TCGA.AF.6136	2	95615156	243048759	41986	0.1685	NEUTRAL	NA	747	Too-Many
TCGA.AG.3891.01A	2	95775612	102456244	584	0.0024	NEUTRAL	NA	66	"ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,C2orf15,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,DUSP2,EIF5B,FAHD2A,FAHD2B,FAM178B,FER1L5,GPAT2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAP4K4,MGAT4A,MITD1,MRPL30,MRPS5,NCAPH,NEURL3,NMS,NPAS2,PDCL3,PROM2,REV1,RFX8,RNF149,RPL31,SEMA4C,SNRNP200,STARD7,TBC1D8,TMEM127,TMEM131,TRIM43,TRIM43B,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.AA.A01Q.01A	2	95780763	97217158	137	-0.2723	NEUTRAL	NA	20	"ADRA2B,ARID5A,ASTL,CIAO1,DUSP2,FAHD2A,GPAT2,ITPRIPL1,KCNIP3,MRPS5,NCAPH,NEURL3,PROM2,SNRNP200,STARD7,TMEM127,TRIM43,TRIM43B,ZNF2,ZNF514"
TCGA.AG.3906.01A	2	95841889	95976094	23	0.1992	NEUTRAL	NA	3	"KCNIP3,PROM2,ZNF2"
TCGA.AG.A00C.01A	2	95846807	120124541	1303	-0.0044	NEUTRAL	NA	145	Too-Many
TCGA.AA.A00F.01A	2	95940282	97531973	165	0.0792	NEUTRAL	NA	25	"ADRA2B,ANKRD23,ANKRD39,ARID5A,ASTL,CIAO1,CNNM3,CNNM4,DUSP2,FAHD2A,FER1L5,GPAT2,ITPRIPL1,KANSL3,KCNIP3,LMAN2L,NCAPH,NEURL3,PROM2,SEMA4C,SNRNP200,STARD7,TMEM127,TRIM43,TRIM43B"
TCGA.AA.A00D.01A	2	95941137	99634632	237	-0.3246	NEUTRAL	NA	41	"ACTR1B,ADRA2B,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,CIAO1,CNGA3,CNNM3,CNNM4,COA5,COX5B,DUSP2,FAHD2A,FAHD2B,FAM178B,FER1L5,GPAT2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LMAN2L,MGAT4A,NCAPH,NEURL3,PROM2,SEMA4C,SNRNP200,STARD7,TMEM127,TMEM131,TRIM43,TRIM43B,TSGA10,UNC50,VWA3B,ZAP70"
TCGA.AG.3909.01A	2	95944409	96048076	18	0.3584	NEUTRAL	NA	2	"KCNIP3,PROM2"
TCGA.AG.3906.01A	2	96040005	96781493	25	-0.1508	NEUTRAL	NA	6	"ADRA2B,FAHD2A,GPAT2,KCNIP3,TRIM43,TRIM43B"
TCGA.AA.A010.01A	2	96047302	96697742	23	0.2329	NEUTRAL	NA	5	"FAHD2A,GPAT2,KCNIP3,TRIM43,TRIM43B"
TCGA.AG.3909.01A	2	96049677	97217158	107	-0.226	NEUTRAL	NA	16	"ADRA2B,ARID5A,ASTL,CIAO1,DUSP2,FAHD2A,GPAT2,ITPRIPL1,KCNIP3,NCAPH,NEURL3,SNRNP200,STARD7,TMEM127,TRIM43,TRIM43B"
TCGA.AG.A01W.01A	2	96326802	96393919	23	0.0473	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	96631091	96715373	36	0.0498	NEUTRAL	NA	1	GPAT2
TCGA.AA.A00N.01A	2	96687859	96962641	67	-0.3312	NEUTRAL	NA	8	"ADRA2B,ASTL,CIAO1,DUSP2,GPAT2,SNRNP200,STARD7,TMEM127"
TCGA.AG.A01W.01A	2	96726929	96731707	9	0.3186	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	96732053	96790816	14	-0.0772	NEUTRAL	NA	2	"ADRA2B,ASTL"
TCGA.A6.3808.01A	2	96789549	97757157	215	-0.357	NEUTRAL	NA	20	"ANKRD23,ANKRD39,ARID5A,ASTL,CIAO1,CNNM3,CNNM4,DUSP2,FAHD2B,FAM178B,FER1L5,ITPRIPL1,KANSL3,LMAN2L,NCAPH,NEURL3,SEMA4C,SNRNP200,STARD7,TMEM127"
TCGA.AG.3906.01A	2	96809915	97364738	99	-0.0688	NEUTRAL	NA	11	"ARID5A,CIAO1,DUSP2,FER1L5,ITPRIPL1,KANSL3,NCAPH,NEURL3,SNRNP200,STARD7,TMEM127"
TCGA.AG.4009.01A	2	96810483	96906012	9	-0.0094	NEUTRAL	NA	2	"DUSP2,STARD7"
TCGA.AA.A01F.01A	2	96860621	96933336	8	0.0409	NEUTRAL	NA	3	"CIAO1,STARD7,TMEM127"
TCGA.AG.A01W.01A	2	96868970	106408838	640	0.3195	NEUTRAL	NA	71	"ACTR1B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,C2orf15,C2orf49,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,EIF5B,FAHD2B,FAM178B,FER1L5,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,ITPRIPL1,KANSL3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCAPH,NCK2,NEURL3,NMS,NPAS2,PDCL3,POU3F3,REV1,RFX8,RNF149,RPL31,SEMA4C,SLC9A2,SLC9A4,SNRNP200,STARD7,TBC1D8,TGFBRAP1,TMEM127,TMEM131,TMEM182,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70"
TCGA.AG.4009.01A	2	96919509	96947520	15	-0.4128	NEUTRAL	NA	3	"CIAO1,SNRNP200,TMEM127"
TCGA.AA.A010.01A	2	96933021	96961186	31	-0.2075	NEUTRAL	NA	2	"CIAO1,SNRNP200"
TCGA.AA.A024.01A	2	96934950	219266794	6275	0.0032	NEUTRAL	NA	536	Too-Many
TCGA.AG.4009.01A	2	96948918	97038973	48	0.0334	NEUTRAL	NA	3	"ITPRIPL1,NCAPH,SNRNP200"
TCGA.AA.A01F.01A	2	96961186	97475010	54	0.1287	NEUTRAL	NA	9	"ARID5A,CNNM4,FER1L5,ITPRIPL1,KANSL3,LMAN2L,NCAPH,NEURL3,SNRNP200"
TCGA.AA.A010.01A	2	96962222	97351019	73	0.2289	NEUTRAL	NA	7	"ARID5A,FER1L5,ITPRIPL1,KANSL3,NCAPH,NEURL3,SNRNP200"
TCGA.AA.A00N.01A	2	97018990	97217158	17	-0.2507	NEUTRAL	NA	3	"ARID5A,NCAPH,NEURL3"
TCGA.AG.A015.01A	2	97024736	97261259	12	0.2949	NEUTRAL	NA	4	"ARID5A,KANSL3,NCAPH,NEURL3"
TCGA.AG.3611.01A	2	97030182	97213092	7	0.247	NEUTRAL	NA	3	"ARID5A,NCAPH,NEURL3"
TCGA.AG.3611.01A	2	97215007	98278281	74	-0.1639	NEUTRAL	NA	15	"ACTR1B,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,CNNM3,CNNM4,COX5B,FAHD2B,FAM178B,FER1L5,KANSL3,LMAN2L,SEMA4C"
TCGA.AG.4009.01A	2	97261259	97405564	37	-0.0994	NEUTRAL	NA	3	"FER1L5,KANSL3,LMAN2L"
TCGA.AG.A015.01A	2	97267338	97296999	16	-0.4644	NEUTRAL	NA	1	KANSL3
TCGA.AA.A00N.01A	2	97279178	97426718	54	-0.0355	NEUTRAL	NA	4	"CNNM4,FER1L5,KANSL3,LMAN2L"
TCGA.AF.2689	2	97288585	97655881	47	-0.1043	NEUTRAL	NA	9	"ANKRD23,ANKRD39,CNNM3,CNNM4,FAM178B,FER1L5,KANSL3,LMAN2L,SEMA4C"
TCGA.AG.3909.01A	2	97296999	97426718	23	0.1703	NEUTRAL	NA	4	"CNNM4,FER1L5,KANSL3,LMAN2L"
TCGA.AA.3861.01A	2	97308518	97559633	85	-0.1869	NEUTRAL	NA	8	"ANKRD23,ANKRD39,CNNM3,CNNM4,FAM178B,FER1L5,LMAN2L,SEMA4C"
TCGA.AA.3544	2	97328851	117003834	5207	0.0529	NEUTRAL	NA	117	Too-Many
TCGA.AG.A015.01A	2	97361279	97368704	8	0.2145	NEUTRAL	NA	1	FER1L5
TCGA.AA.A010.01A	2	97364738	97403634	17	0.2271	NEUTRAL	NA	2	"FER1L5,LMAN2L"
TCGA.AG.3906.01A	2	97365260	97405564	15	0.2379	NEUTRAL	NA	2	"FER1L5,LMAN2L"
TCGA.AA.A02F.01A	2	97368704	108998810	601	0.0558	NEUTRAL	NA	71	"ACTR1B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,C2orf15,C2orf40,C2orf49,CHST10,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,EIF5B,FAHD2B,FAM178B,FER1L5,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,REV1,RFX8,RGPD3,RGPD4,RNF149,RPL31,SEMA4C,SLC5A7,SLC9A2,SLC9A4,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TBC1D8,TGFBRAP1,TMEM131,TMEM182,TSGA10,TXNDC9,UNC50,UXS1,VWA3B,ZAP70"
TCGA.AG.A015.01A	2	97369213	97405564	9	-0.4162	NEUTRAL	NA	2	"FER1L5,LMAN2L"
TCGA.AA.A00Q.01A	2	97372976	110962414	537	-0.3451	NEUTRAL	NA	84	"ACTR1B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,C2orf15,C2orf40,C2orf49,CCDC138,CHST10,CNGA3,CNNM3,CNNM4,CNOT11,COA5,COX5B,CREG2,EDAR,EIF5B,FAHD2B,FAM178B,FHL2,GCC2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,KIAA1211L,LIMS1,LIMS3,LIMS3L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MALL,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,NPHP1,PDCL3,POU3F3,RANBP2,REV1,RFX8,RGPD3,RGPD4,RGPD5,RGPD6,RNF149,RPL31,SEMA4C,SEPT10,SH3RF3,SLC5A7,SLC9A2,SLC9A4,SOWAHC,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TBC1D8,TGFBRAP1,TMEM131,TMEM182,TSGA10,TXNDC9,UNC50,UXS1,VWA3B,ZAP70"
TCGA.AG.A015.01A	2	97426718	97494287	13	0.3263	NEUTRAL	NA	2	"CNNM3,CNNM4"
TCGA.CK.5914.01A	2	97426718	97544092	37	-0.2264	NEUTRAL	NA	6	"ANKRD23,ANKRD39,CNNM3,CNNM4,FAM178B,SEMA4C"
TCGA.AG.3906.01A	2	97490767	100185265	273	-0.1191	NEUTRAL	NA	30	"ACTR1B,AFF3,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,C2orf15,CNGA3,CNNM3,COA5,COX5B,EIF5B,FAHD2B,FAM178B,INPP4A,KIAA1211L,LIPT1,LYG1,LYG2,MGAT4A,MITD1,MRPL30,REV1,SEMA4C,TMEM131,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70"
TCGA.AG.A015.01A	2	97494681	118577198	1035	-0.1485	NEUTRAL	NA	115	Too-Many
TCGA.AA.A01Q.01A	2	97505235	97544092	21	-0.3017	NEUTRAL	NA	4	"ANKRD23,ANKRD39,FAM178B,SEMA4C"
TCGA.AA.A01F.01A	2	97505235	98797447	52	0.1953	NEUTRAL	NA	12	"ACTR1B,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,COX5B,FAHD2B,FAM178B,SEMA4C,TMEM131,VWA3B,ZAP70"
TCGA.AA.A010.01A	2	97523588	97559633	12	-0.3829	NEUTRAL	NA	3	"ANKRD39,FAM178B,SEMA4C"
TCGA.AG.3909.01A	2	97530434	97544092	7	0.0193	NEUTRAL	NA	2	"FAM178B,SEMA4C"
TCGA.AA.A00F.01A	2	97533477	97586854	6	-0.2588	NEUTRAL	NA	2	"FAM178B,SEMA4C"
TCGA.AG.4009.01A	2	97543599	109371461	627	0.0267	NEUTRAL	NA	67	"ACTR1B,AFF3,ANKRD36,ANKRD36B,C2orf15,C2orf40,C2orf49,CHST10,CNGA3,CNOT11,COA5,COX5B,CREG2,EIF5B,FAHD2B,FAM178B,FHL2,GCC2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,KIAA1211L,LIMS1,LIPT1,LONRF2,LYG1,LYG2,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,RANBP2,REV1,RFX8,RGPD3,RGPD4,RNF149,RPL31,SLC5A7,SLC9A2,SLC9A4,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TBC1D8,TGFBRAP1,TMEM131,TMEM182,TSGA10,TXNDC9,UNC50,UXS1,VWA3B,ZAP70"
TCGA.CK.5914.01A	2	97559633	97783753	20	0.2956	NEUTRAL	NA	3	"ANKRD36,FAHD2B,FAM178B"
TCGA.AA.A01Q.01A	2	97559633	98275768	21	0.1664	NEUTRAL	NA	6	"ACTR1B,ANKRD36,ANKRD36B,COX5B,FAHD2B,FAM178B"
TCGA.EI.6885	2	97591669	99357164	255	-0.399	NEUTRAL	NA	14	"ACTR1B,ANKRD36,ANKRD36B,CNGA3,COA5,COX5B,FAHD2B,FAM178B,INPP4A,MGAT4A,TMEM131,UNC50,VWA3B,ZAP70"
TCGA.AF.2689	2	97655962	243048759	41883	0.2713	NEUTRAL	NA	717	Too-Many
TCGA.AA.A00F.01A	2	97749453	98355836	25	0.151	NEUTRAL	NA	6	"ACTR1B,ANKRD36,ANKRD36B,COX5B,FAHD2B,ZAP70"
TCGA.AA.A02K.01A	2	97858509	98171494	25	-0.2316	NEUTRAL	NA	2	"ANKRD36,ANKRD36B"
TCGA.AA.A010.01A	2	98129614	98262523	18	-0.3823	NEUTRAL	NA	2	"ANKRD36B,COX5B"
TCGA.AG.A011.01A	2	98164139	114202487	947	0.0364	NEUTRAL	NA	102	Too-Many
TCGA.AA.A02K.01A	2	98173339	128388316	1456	0.126	NEUTRAL	NA	139	Too-Many
TCGA.CK.5914.01A	2	98192788	98750277	66	-0.0971	NEUTRAL	NA	6	"ACTR1B,ANKRD36B,COX5B,TMEM131,VWA3B,ZAP70"
TCGA.AG.3909.01A	2	98195322	98750277	62	-0.3427	NEUTRAL	NA	6	"ACTR1B,ANKRD36B,COX5B,TMEM131,VWA3B,ZAP70"
TCGA.AZ.4684.01A	2	98201400	99634962	158	-0.022	NEUTRAL	NA	13	"ACTR1B,ANKRD36B,CNGA3,COA5,COX5B,INPP4A,KIAA1211L,MGAT4A,TMEM131,TSGA10,UNC50,VWA3B,ZAP70"
TCGA.AA.3861.01A	2	98205951	106781122	560	9.00E-04	NEUTRAL	NA	54	"ACTR1B,AFF3,ANKRD36B,C2orf15,C2orf40,C2orf49,CHST10,CNGA3,CNOT11,COA5,COX5B,CREG2,EIF5B,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,KIAA1211L,LIPT1,LONRF2,LYG1,LYG2,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,REV1,RFX8,RNF149,RPL31,SLC9A2,SLC9A4,TBC1D8,TGFBRAP1,TMEM131,TMEM182,TSGA10,TXNDC9,UNC50,UXS1,VWA3B,ZAP70"
TCGA.AA.3862.01A	2	98205951	106781122	562	0.1162	NEUTRAL	NA	54	"ACTR1B,AFF3,ANKRD36B,C2orf15,C2orf40,C2orf49,CHST10,CNGA3,CNOT11,COA5,COX5B,CREG2,EIF5B,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,KIAA1211L,LIPT1,LONRF2,LYG1,LYG2,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,REV1,RFX8,RNF149,RPL31,SLC9A2,SLC9A4,TBC1D8,TGFBRAP1,TMEM131,TMEM182,TSGA10,TXNDC9,UNC50,UXS1,VWA3B,ZAP70"
TCGA.A6.3808.01A	2	98262523	106781122	566	0.0029	NEUTRAL	NA	53	"ACTR1B,AFF3,C2orf15,C2orf40,C2orf49,CHST10,CNGA3,CNOT11,COA5,COX5B,CREG2,EIF5B,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,INPP4A,KIAA1211L,LIPT1,LONRF2,LYG1,LYG2,MAP4K4,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,REV1,RFX8,RNF149,RPL31,SLC9A2,SLC9A4,TBC1D8,TGFBRAP1,TMEM131,TMEM182,TSGA10,TXNDC9,UNC50,UXS1,VWA3B,ZAP70"
TCGA.AA.A00N.01A	2	98273569	98750277	57	-0.3561	NEUTRAL	NA	4	"ACTR1B,TMEM131,VWA3B,ZAP70"
TCGA.AG.3611.01A	2	98355836	99651691	42	-0.1545	NEUTRAL	NA	10	"CNGA3,COA5,INPP4A,KIAA1211L,MGAT4A,TMEM131,TSGA10,UNC50,VWA3B,ZAP70"
TCGA.AA.A01Q.01A	2	98373545	113939982	676	0.0854	NEUTRAL	NA	96	"ACOXL,AFF3,ANAPC1,BCL2L11,BUB1,C2orf15,C2orf40,C2orf49,CCDC138,CHCHD5,CHST10,CKAP2L,CNGA3,CNOT11,COA5,CREG2,EDAR,EIF5B,FBLN7,FHL2,GCC2,GPR45,IL18R1,IL18RAP,IL1A,IL1B,IL1F10,IL1R1,IL1R2,IL1RL1,IL1RL2,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INPP4A,KIAA1211L,LIMS1,LIMS3,LIMS3L,LIPT1,LONRF2,LYG1,LYG2,MALL,MAP4K4,MERTK,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,NPHP1,PDCL3,POLR1B,POU3F3,PSD4,RANBP2,REV1,RFX8,RGPD3,RGPD4,RGPD5,RGPD6,RGPD8,RNF149,RPL31,SEPT10,SH3RF3,SLC20A1,SLC5A7,SLC9A2,SLC9A4,SOWAHC,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TBC1D8,TGFBRAP1,TMEM131,TMEM182,TMEM87B,TSGA10,TTL,TXNDC9,UNC50,UXS1,VWA3B,ZC3H6,ZC3H8"
TCGA.AA.A00F.01A	2	98408862	99012269	11	-0.2264	NEUTRAL	NA	3	"CNGA3,TMEM131,VWA3B"
TCGA.DM.A288	2	98461820	99202746	137	-0.454	NEUTRAL	NA	4	"CNGA3,INPP4A,TMEM131,VWA3B"
TCGA.AA.A01F.01A	2	98914333	99008279	7	-0.2056	NEUTRAL	NA	2	"CNGA3,VWA3B"
TCGA.AA.A01F.01A	2	99012269	113890216	642	0.1277	NEUTRAL	NA	93	"ACOXL,AFF3,ANAPC1,BCL2L11,BUB1,C2orf15,C2orf40,C2orf49,CCDC138,CHCHD5,CHST10,CKAP2L,CNGA3,CNOT11,COA5,CREG2,EDAR,EIF5B,FBLN7,FHL2,GCC2,GPR45,IL18R1,IL18RAP,IL1A,IL1B,IL1F10,IL1R1,IL1R2,IL1RL1,IL1RL2,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INPP4A,KIAA1211L,LIMS1,LIMS3,LIMS3L,LIPT1,LONRF2,LYG1,LYG2,MALL,MAP4K4,MERTK,MFSD9,MGAT4A,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,NPHP1,PDCL3,POLR1B,POU3F3,RANBP2,REV1,RFX8,RGPD3,RGPD4,RGPD5,RGPD6,RGPD8,RNF149,RPL31,SEPT10,SH3RF3,SLC20A1,SLC5A7,SLC9A2,SLC9A4,SOWAHC,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TBC1D8,TGFBRAP1,TMEM182,TMEM87B,TSGA10,TTL,TXNDC9,UNC50,UXS1,ZC3H6,ZC3H8"
TCGA.AA.A00F.01A	2	99152543	99256254	13	0.2437	NEUTRAL	NA	4	"COA5,INPP4A,MGAT4A,UNC50"
TCGA.CK.5914.01A	2	99184987	99790328	63	-0.1142	NEUTRAL	NA	9	"C2orf15,COA5,INPP4A,KIAA1211L,LIPT1,MGAT4A,MITD1,TSGA10,UNC50"
TCGA.AG.3909.01A	2	99234607	99787750	47	-0.0735	NEUTRAL	NA	7	"C2orf15,KIAA1211L,LIPT1,MGAT4A,MITD1,TSGA10,UNC50"
TCGA.AA.A00N.01A	2	99252920	99725776	38	0.1162	NEUTRAL	NA	3	"KIAA1211L,MGAT4A,TSGA10"
TCGA.AA.A00F.01A	2	99260336	99697707	20	-0.0496	NEUTRAL	NA	3	"KIAA1211L,MGAT4A,TSGA10"
TCGA.EI.6885	2	99360846	114186946	4204	0.1933	NEUTRAL	NA	90	"ACOXL,AFF3,ANAPC1,BCL2L11,BUB1,C2orf15,C2orf40,C2orf49,CCDC138,CHCHD5,CHST10,CKAP2L,CNOT11,CREG2,EDAR,EIF5B,FBLN7,FHL2,GCC2,GPR45,IL18R1,IL18RAP,IL1A,IL1B,IL1F10,IL1R1,IL1R2,IL1RL1,IL1RL2,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,KIAA1211L,LIMS1,LIMS3,LIMS3L,LIPT1,LONRF2,LYG1,LYG2,MALL,MAP4K4,MERTK,MFSD9,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,NPHP1,PAX8,PDCL3,POLR1B,POU3F3,PSD4,RANBP2,REV1,RFX8,RGPD3,RGPD4,RGPD5,RGPD6,RGPD8,RNF149,RPL31,SEPT10,SH3RF3,SLC20A1,SLC5A7,SLC9A2,SLC9A4,SOWAHC,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TBC1D8,TGFBRAP1,TMEM182,TMEM87B,TSGA10,TTL,TXNDC9,UXS1,ZC3H6,ZC3H8"
TCGA.G4.6626	2	99384370	99913997	91	-0.0251	NEUTRAL	NA	8	"C2orf15,KIAA1211L,LIPT1,LYG1,LYG2,MITD1,MRPL30,TSGA10"
TCGA.AG.3611.01A	2	99681370	99725776	10	0.2724	NEUTRAL	NA	1	TSGA10
TCGA.AA.3975	2	99696806	243048759	41550	-0.0119	NEUTRAL	NA	703	Too-Many
TCGA.AA.A00F.01A	2	99720379	99790328	13	0.2622	NEUTRAL	NA	4	"C2orf15,LIPT1,MITD1,TSGA10"
TCGA.AG.3611.01A	2	99763846	108496487	292	-0.1875	NEUTRAL	NA	45	"AFF3,C2orf15,C2orf40,C2orf49,CHST10,CNOT11,CREG2,EIF5B,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,LIPT1,LONRF2,LYG1,LYG2,MAP4K4,MFSD9,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,REV1,RFX8,RGPD3,RGPD4,RNF149,RPL31,SLC9A2,SLC9A4,ST6GAL2,TBC1D8,TGFBRAP1,TMEM182,TSGA10,TXNDC9,UXS1"
TCGA.AZ.4684.01A	2	99763846	108604565	433	-0.058	NEUTRAL	NA	46	"AFF3,C2orf15,C2orf40,C2orf49,CHST10,CNOT11,CREG2,EIF5B,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,LIPT1,LONRF2,LYG1,LYG2,MAP4K4,MFSD9,MITD1,MRPL30,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,REV1,RFX8,RGPD3,RGPD4,RNF149,RPL31,SLC5A7,SLC9A2,SLC9A4,ST6GAL2,TBC1D8,TGFBRAP1,TMEM182,TSGA10,TXNDC9,UXS1"
TCGA.AA.A00F.01A	2	99797263	99912026	16	-0.154	NEUTRAL	NA	4	"LYG1,LYG2,MITD1,MRPL30"
TCGA.CK.5914.01A	2	99797263	101609772	145	0.3129	NEUTRAL	NA	13	"AFF3,CHST10,EIF5B,LONRF2,LYG1,LYG2,MITD1,MRPL30,NMS,NPAS2,PDCL3,REV1,TXNDC9"
TCGA.AG.3909.01A	2	99936098	99949441	4	-0.2266	NEUTRAL	NA	1	TXNDC9
TCGA.AG.3909.01A	2	99953939	100915267	71	0.3128	NEUTRAL	NA	4	"AFF3,EIF5B,LONRF2,REV1"
TCGA.AA.A00L.01A	2	99977559	100017652	6	0.2725	NEUTRAL	NA	2	"EIF5B,REV1"
TCGA.AH.6549.01A	2	99992783	100058741	33	-0.4828	NEUTRAL	NA	2	"EIF5B,REV1"
TCGA.AA.A00F.01A	2	100017652	101096874	66	-0.066	NEUTRAL	NA	5	"AFF3,CHST10,LONRF2,NMS,REV1"
TCGA.AA.A00L.01A	2	100018660	108496487	269	-0.4065	NEUTRAL	NA	36	"AFF3,C2orf40,C2orf49,CHST10,CNOT11,CREG2,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,LONRF2,MAP4K4,MFSD9,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,REV1,RFX8,RGPD3,RGPD4,RNF149,RPL31,SLC9A2,SLC9A4,ST6GAL2,TBC1D8,TGFBRAP1,TMEM182,UXS1"
TCGA.AH.6549.01A	2	100065756	171812978	3317	-0.007	NEUTRAL	NA	271	Too-Many
TCGA.AA.A00N.01A	2	100181927	100210206	7	-0.4256	NEUTRAL	NA	1	AFF3
TCGA.AG.3906.01A	2	100266011	121735958	937	-0.0244	NEUTRAL	NA	104	Too-Many
TCGA.DM.A288	2	100457032	101859140	519	-0.4451	NEUTRAL	NA	8	"AFF3,CHST10,LONRF2,NMS,NPAS2,PDCL3,RPL31,TBC1D8"
TCGA.AG.3909.01A	2	100915648	101022986	10	-0.1389	NEUTRAL	NA	2	"CHST10,LONRF2"
TCGA.AA.A010.01A	2	101086887	106774445	277	0.285	NEUTRAL	NA	29	"C2orf40,C2orf49,CNOT11,CREG2,FHL2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,MAP4K4,MFSD9,MRPS9,NCK2,NMS,NPAS2,PDCL3,POU3F3,RFX8,RNF149,RPL31,SLC9A2,SLC9A4,TBC1D8,TGFBRAP1,TMEM182,UXS1"
TCGA.AA.A00F.01A	2	101097511	101521180	11	0.2705	NEUTRAL	NA	3	"NMS,NPAS2,PDCL3"
TCGA.AA.A00D.01A	2	101099624	103040659	107	-0.3012	NEUTRAL	NA	16	"CNOT11,CREG2,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,MAP4K4,NMS,NPAS2,PDCL3,RFX8,RNF149,RPL31,TBC1D8"
TCGA.AG.3909.01A	2	101521180	101594115	14	0.247	NEUTRAL	NA	1	NPAS2
TCGA.AA.A00N.01A	2	101521180	101598642	15	0.2894	NEUTRAL	NA	1	NPAS2
TCGA.AA.A00F.01A	2	101541580	113332412	427	0.0313	NEUTRAL	NA	60	"ACOXL,ANAPC1,BCL2L11,BUB1,C2orf40,C2orf49,CCDC138,CNOT11,CREG2,EDAR,FBLN7,FHL2,GCC2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,LIMS1,LIMS3,LIMS3L,MALL,MAP4K4,MERTK,MFSD9,MRPS9,NCK2,NPAS2,NPHP1,POLR1B,POU3F3,RANBP2,RFX8,RGPD3,RGPD4,RGPD5,RGPD6,RGPD8,RNF149,RPL31,SEPT10,SH3RF3,SLC5A7,SLC9A2,SLC9A4,SOWAHC,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TBC1D8,TGFBRAP1,TMEM182,TMEM87B,TTL,UXS1,ZC3H6,ZC3H8"
TCGA.AA.A01K.01A	2	101609772	162036087	2232	0.1043	NEUTRAL	NA	218	Too-Many
TCGA.CK.5914.01A	2	101611813	101652462	20	-0.3457	NEUTRAL	NA	3	"NPAS2,RPL31,TBC1D8"
TCGA.G4.6626	2	101819665	141625409	11663	-0.0673	NEUTRAL	NA	165	Too-Many
TCGA.DM.A288	2	101865981	103367095	550	0.0962	NEUTRAL	NA	14	"CNOT11,CREG2,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,MAP4K4,MFSD9,RFX8,RNF149,SLC9A2,SLC9A4"
TCGA.AG.3909.01A	2	101869376	101924562	14	-0.2827	NEUTRAL	NA	2	"CNOT11,RNF149"
TCGA.CK.5914.01A	2	101874211	102314887	30	-0.1871	NEUTRAL	NA	5	"CNOT11,CREG2,MAP4K4,RFX8,RNF149"
TCGA.AG.3891.01A	2	102459016	102493414	16	-0.4467	NEUTRAL	NA	1	MAP4K4
TCGA.EI.6508	2	102462573	115254528	3573	-0.0019	NEUTRAL	NA	73	"ACOXL,ACTR3,ANAPC1,BCL2L11,BUB1,C2orf40,C2orf49,CBWD2,CCDC138,CHCHD5,CKAP2L,DPP10,EDAR,FBLN7,FHL2,FOXD4L1,GCC2,GPR45,IL18R1,IL18RAP,IL1A,IL1B,IL1F10,IL1R1,IL1R2,IL1RL1,IL1RL2,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,LIMS1,LIMS3,LIMS3L,MALL,MAP4K4,MERTK,MFSD9,MRPS9,NCK2,NPHP1,PAX8,POLR1B,POU3F3,PSD4,RABL2A,RANBP2,RGPD3,RGPD4,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SLC35F5,SLC5A7,SLC9A2,SLC9A4,SOWAHC,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TGFBRAP1,TMEM182,TMEM87B,TTL,UXS1,ZC3H6,ZC3H8"
TCGA.AG.3891.01A	2	102499051	109492527	277	-0.0549	NEUTRAL	NA	31	"C2orf40,C2orf49,CCDC138,FHL2,GCC2,GPR45,IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,LIMS1,MAP4K4,MFSD9,MRPS9,NCK2,POU3F3,RANBP2,RGPD3,RGPD4,SLC5A7,SLC9A2,SLC9A4,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TGFBRAP1,TMEM182,UXS1"
TCGA.AG.3909.01A	2	102632306	102817981	20	-0.483	NEUTRAL	NA	3	"IL1R1,IL1R2,IL1RL2"
TCGA.CK.5914.01A	2	102632306	103090227	58	-0.0534	NEUTRAL	NA	7	"IL18R1,IL18RAP,IL1R1,IL1R2,IL1RL1,IL1RL2,SLC9A4"
TCGA.G4.6307	2	102754808	103153666	202	-0.4849	NEUTRAL	NA	6	"IL18R1,IL18RAP,IL1R1,IL1RL1,IL1RL2,SLC9A4"
TCGA.AG.3909.01A	2	102828511	102957089	11	-0.0249	NEUTRAL	NA	2	"IL1RL1,IL1RL2"
TCGA.AA.3864	2	102919584	129646447	7730	0.0352	NEUTRAL	NA	110	Too-Many
TCGA.AG.3909.01A	2	102988396	103001289	4	0.0707	NEUTRAL	NA	1	IL18R1
TCGA.AA.A00N.01A	2	102992315	109383734	222	0.222	NEUTRAL	NA	25	"C2orf40,C2orf49,FHL2,GCC2,GPR45,IL18R1,IL18RAP,LIMS1,MFSD9,MRPS9,NCK2,POU3F3,RANBP2,RGPD3,RGPD4,SLC5A7,SLC9A2,SLC9A4,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TGFBRAP1,TMEM182,UXS1"
TCGA.CK.5914.01A	2	103095246	106810554	96	0.378	NEUTRAL	NA	13	"C2orf40,C2orf49,FHL2,GPR45,MFSD9,MRPS9,NCK2,POU3F3,SLC9A2,SLC9A4,TGFBRAP1,TMEM182,UXS1"
TCGA.G4.6307	2	103164947	243048759	40465	-0.0321	NEUTRAL	NA	673	Too-Many
TCGA.AA.A00D.01A	2	103310831	118583793	469	-0.4073	NEUTRAL	NA	66	"ACOXL,ACTR3,ANAPC1,BCL2L11,BUB1,C2orf40,C2orf49,CBWD2,CCDC138,CHCHD5,CKAP2L,DDX18,DPP10,EDAR,FBLN7,FHL2,FOXD4L1,GCC2,GPR45,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,LIMS1,LIMS3,LIMS3L,MALL,MERTK,MFSD9,MRPS9,NCK2,NPHP1,PAX8,POLR1B,POU3F3,PSD4,RABL2A,RANBP2,RGPD3,RGPD4,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SLC35F5,SLC5A7,SLC9A2,SOWAHC,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TGFBRAP1,TMEM182,TMEM87B,TTL,UXS1,ZC3H6,ZC3H8"
TCGA.AG.3909.01A	2	103317491	103334881	6	-0.1248	NEUTRAL	NA	2	"MFSD9,SLC9A2"
TCGA.AG.3909.01A	2	103353079	105716082	17	0.1752	NEUTRAL	NA	4	"MFSD9,MRPS9,POU3F3,TMEM182"
TCGA.AA.3844	2	103425859	104922007	328	-0.4161	NEUTRAL	NA	1	TMEM182
TCGA.DM.A288	2	103546443	105391646	483	0.0309	NEUTRAL	NA	0	None
TCGA.AA.3941	2	103584937	104896333	294	-0.4676	NEUTRAL	NA	0	None
TCGA.AA.3982	2	103593539	104896333	291	-0.3592	NEUTRAL	NA	0	None
TCGA.AA.3811	2	103598423	104987859	320	-0.2514	NEUTRAL	NA	0	None
TCGA.AA.3872	2	103598574	243048759	40283	0.025	NEUTRAL	NA	670	Too-Many
TCGA.AA.3666	2	103612985	243048759	40339	-0.3882	NEUTRAL	NA	670	Too-Many
TCGA.AG.3896	2	104799000	142274669	10993	0.317	NEUTRAL	NA	150	Too-Many
TCGA.AA.3850	2	104834778	107490500	976	0.22785	NEUTRAL	NA	11	"C2orf40,C2orf49,FHL2,GPR45,MRPS9,NCK2,POU3F3,RGPD3,ST6GAL2,TGFBRAP1,UXS1"
TCGA.AA.3982	2	104904131	106483589	612	0.1569	NEUTRAL	NA	7	"C2orf49,FHL2,GPR45,MRPS9,NCK2,POU3F3,TGFBRAP1"
TCGA.AA.3941	2	104904131	107490500	955	0.3425	NEUTRAL	NA	11	"C2orf40,C2orf49,FHL2,GPR45,MRPS9,NCK2,POU3F3,RGPD3,ST6GAL2,TGFBRAP1,UXS1"
TCGA.AA.3844	2	104931549	107499040	957	0.066	NEUTRAL	NA	11	"C2orf40,C2orf49,FHL2,GPR45,MRPS9,NCK2,POU3F3,RGPD3,ST6GAL2,TGFBRAP1,UXS1"
TCGA.AA.3811	2	105008714	107765725	1024	0.2026	NEUTRAL	NA	11	"C2orf40,C2orf49,FHL2,GPR45,MRPS9,NCK2,POU3F3,RGPD3,ST6GAL2,TGFBRAP1,UXS1"
TCGA.DM.A288	2	105392481	110368568	1577	-0.3954	NEUTRAL	NA	23	"C2orf40,C2orf49,CCDC138,EDAR,FHL2,GCC2,GPR45,LIMS1,MRPS9,NCK2,POU3F3,RANBP2,RGPD3,RGPD4,SEPT10,SH3RF3,SLC5A7,ST6GAL2,SULT1C2,SULT1C3,SULT1C4,TGFBRAP1,UXS1"
TCGA.AA.3841	2	105516724	105586016	15	-0.3727	NEUTRAL	NA	0	None
TCGA.AA.3841	2	105590489	216623253	31148	-0.0049	NEUTRAL	NA	451	Too-Many
TCGA.AG.3909.01A	2	105885737	105912792	8	-0.0905	NEUTRAL	NA	1	TGFBRAP1
TCGA.AG.3909.01A	2	106013039	106694192	8	-0.3933	NEUTRAL	NA	3	"C2orf40,FHL2,NCK2"
TCGA.F5.6863	2	106223123	125112974	5454	0.3718	NEUTRAL	NA	80	"ACOXL,ACTR3,ANAPC1,BCL2L11,BUB1,C1QL2,C2orf40,C2orf76,CBWD2,CCDC138,CCDC93,CFAP221,CHCHD5,CKAP2L,CLASP1,CNTNAP5,DBI,DDX18,DPP10,EDAR,EN1,EPB41L5,FBLN7,FOXD4L1,GCC2,GLI2,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INHBB,INSIG2,LIMS1,LIMS3,LIMS3L,MALL,MARCO,MERTK,NCK2,NIFK,NPHP1,PAX8,POLR1B,PSD4,PTPN4,RABL2A,RALB,RANBP2,RGPD3,RGPD4,RGPD5,RGPD6,RGPD8,SCTR,SEPT10,SH3RF3,SLC20A1,SLC35F5,SLC5A7,SOWAHC,ST6GAL2,STEAP3,SULT1C2,SULT1C3,SULT1C4,TFCP2L1,TMEM177,TMEM185B,TMEM37,TMEM87B,TSN,TTL,UXS1,ZC3H6,ZC3H8"
TCGA.AG.A01W.01A	2	106415798	106442101	9	-0.4901	NEUTRAL	NA	1	NCK2
TCGA.AG.A01W.01A	2	106451041	128193290	912	0.3426	NEUTRAL	NA	86	"ACOXL,ACTR3,ANAPC1,BCL2L11,BIN1,BUB1,C1QL2,C2orf40,C2orf76,CBWD2,CCDC138,CCDC93,CFAP221,CHCHD5,CKAP2L,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EDAR,EN1,EPB41L5,ERCC3,FBLN7,FOXD4L1,GCC2,GLI2,GYPC,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INHBB,INSIG2,LIMS1,LIMS3,LIMS3L,MALL,MAP3K2,MARCO,MERTK,NCK2,NIFK,NPHP1,PAX8,POLR1B,PROC,PSD4,PTPN4,RABL2A,RALB,RANBP2,RGPD3,RGPD4,RGPD5,RGPD6,RGPD8,SCTR,SEPT10,SH3RF3,SLC20A1,SLC35F5,SLC5A7,SOWAHC,ST6GAL2,STEAP3,SULT1C2,SULT1C3,SULT1C4,TFCP2L1,TMEM177,TMEM185B,TMEM37,TMEM87B,TSN,TTL,UXS1,ZC3H6,ZC3H8"
TCGA.AA.3982	2	106490020	107507701	351	0.1948	NEUTRAL	NA	5	"C2orf40,NCK2,RGPD3,ST6GAL2,UXS1"
TCGA.A6.3808.01A	2	107084666	108443416	8	0.1254	NEUTRAL	NA	3	"RGPD3,RGPD4,ST6GAL2"
TCGA.AA.3861.01A	2	107084666	108443416	8	-0.3322	NEUTRAL	NA	3	"RGPD3,RGPD4,ST6GAL2"
TCGA.AA.3862.01A	2	107084666	108443416	8	-0.4548	NEUTRAL	NA	3	"RGPD3,RGPD4,ST6GAL2"
TCGA.AG.3909.01A	2	107446474	107459444	4	-0.4778	NEUTRAL	NA	1	ST6GAL2
TCGA.AA.3941	2	107493638	108880477	423	-0.1397	NEUTRAL	NA	4	"RGPD4,SLC5A7,ST6GAL2,SULT1C3"
TCGA.AA.3850	2	107493638	108885339	424	-0.22055	NEUTRAL	NA	4	"RGPD4,SLC5A7,ST6GAL2,SULT1C3"
TCGA.AA.3844	2	107499339	108885339	418	-0.2593	NEUTRAL	NA	4	"RGPD4,SLC5A7,ST6GAL2,SULT1C3"
TCGA.AA.3982	2	107512319	108968390	448	-0.1708	NEUTRAL	NA	4	"RGPD4,SLC5A7,SULT1C2,SULT1C3"
TCGA.AA.3811	2	107792679	108968223	337	-0.0988	NEUTRAL	NA	4	"RGPD4,SLC5A7,SULT1C2,SULT1C3"
TCGA.AA.3861.01A	2	108604565	109068797	32	0.1107	NEUTRAL	NA	5	"GCC2,SLC5A7,SULT1C2,SULT1C3,SULT1C4"
TCGA.AA.3862.01A	2	108604565	109068797	32	0.1166	NEUTRAL	NA	5	"GCC2,SLC5A7,SULT1C2,SULT1C3,SULT1C4"
TCGA.AG.3909.01A	2	108618311	108626671	4	-0.2234	NEUTRAL	NA	1	SLC5A7
TCGA.AZ.4308	2	108701309	124662445	4439	-0.0016	NEUTRAL	NA	72	"ACOXL,ACTR3,ANAPC1,BCL2L11,BUB1,C1QL2,C2orf76,CBWD2,CCDC138,CCDC93,CFAP221,CHCHD5,CKAP2L,CLASP1,DBI,DDX18,DPP10,EDAR,EN1,EPB41L5,FBLN7,FOXD4L1,GCC2,GLI2,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INHBB,INSIG2,LIMS1,LIMS3,LIMS3L,MALL,MARCO,MERTK,NIFK,NPHP1,PAX8,POLR1B,PSD4,PTPN4,RABL2A,RALB,RANBP2,RGPD5,RGPD6,RGPD8,SCTR,SEPT10,SH3RF3,SLC20A1,SLC35F5,SOWAHC,STEAP3,SULT1C2,SULT1C3,SULT1C4,TFCP2L1,TMEM177,TMEM185B,TMEM37,TMEM87B,TSN,TTL,ZC3H6,ZC3H8"
TCGA.AA.3522	2	108816272	243048759	38643	-0.3615	NEUTRAL	NA	657	Too-Many
TCGA.AA.A00L.01A	2	108863634	108881648	7	-0.4031	NEUTRAL	NA	1	SULT1C3
TCGA.AG.3611.01A	2	108863634	130912652	736	-0.1418	NEUTRAL	NA	94	"ACOXL,ACTR3,AMMECR1L,ANAPC1,BCL2L11,BIN1,BUB1,C1QL2,C2orf76,CBWD2,CCDC138,CCDC74B,CCDC93,CFAP221,CHCHD5,CKAP2L,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EDAR,EN1,EPB41L5,ERCC3,FBLN7,FOXD4L1,GCC2,GLI2,GPR17,GYPC,HS6ST1,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INHBB,INSIG2,IWS1,LIMS1,LIMS2,LIMS3,LIMS3L,MALL,MAP3K2,MARCO,MERTK,MYO7B,NIFK,NPHP1,PAX8,POLR1B,POLR2D,POTEF,PROC,PSD4,PTPN4,RAB6C,RABL2A,RALB,RANBP2,RGPD5,RGPD6,RGPD8,SAP130,SCTR,SEPT10,SFT2D3,SH3RF3,SLC20A1,SLC35F5,SMPD4,SOWAHC,STEAP3,SULT1C2,SULT1C3,SULT1C4,TFCP2L1,TMEM177,TMEM185B,TMEM37,TMEM87B,TSN,TTL,UGGT1,WDR33,ZC3H6,ZC3H8"
TCGA.AZ.4684.01A	2	108881232	109085389	20	-0.2393	NEUTRAL	NA	4	"GCC2,SULT1C2,SULT1C3,SULT1C4"
TCGA.AA.3941	2	108885339	114971912	1371	0.3444	NEUTRAL	NA	47	"ACOXL,ACTR3,ANAPC1,BCL2L11,BUB1,CBWD2,CCDC138,CHCHD5,CKAP2L,EDAR,FBLN7,FOXD4L1,GCC2,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,LIMS1,LIMS3,LIMS3L,MALL,MERTK,NPHP1,PAX8,POLR1B,PSD4,RABL2A,RANBP2,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SLC35F5,SOWAHC,SULT1C2,SULT1C4,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AA.3844	2	108886170	113773560	978	0.0928	NEUTRAL	NA	36	"ACOXL,ANAPC1,BCL2L11,BUB1,CCDC138,CHCHD5,CKAP2L,EDAR,FBLN7,GCC2,IL1A,IL1B,IL36A,IL36G,IL37,LIMS1,LIMS3,LIMS3L,MALL,MERTK,NPHP1,POLR1B,RANBP2,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SOWAHC,SULT1C2,SULT1C4,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AA.3850	2	108886170	114914462	1351	0.26605	NEUTRAL	NA	47	"ACOXL,ACTR3,ANAPC1,BCL2L11,BUB1,CBWD2,CCDC138,CHCHD5,CKAP2L,EDAR,FBLN7,FOXD4L1,GCC2,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,LIMS1,LIMS3,LIMS3L,MALL,MERTK,NPHP1,PAX8,POLR1B,PSD4,RABL2A,RANBP2,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SLC35F5,SOWAHC,SULT1C2,SULT1C4,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AA.A00L.01A	2	108910106	109374857	45	-0.0451	NEUTRAL	NA	5	"GCC2,LIMS1,RANBP2,SULT1C2,SULT1C4"
TCGA.AA.3811	2	108968390	115112542	1369	0.2485	NEUTRAL	NA	46	"ACOXL,ACTR3,ANAPC1,BCL2L11,BUB1,CBWD2,CCDC138,CHCHD5,CKAP2L,EDAR,FBLN7,FOXD4L1,GCC2,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,LIMS1,LIMS3,LIMS3L,MALL,MERTK,NPHP1,PAX8,POLR1B,PSD4,RABL2A,RANBP2,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SLC35F5,SOWAHC,SULT1C4,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AA.3982	2	108970823	113773560	947	0.2055	NEUTRAL	NA	35	"ACOXL,ANAPC1,BCL2L11,BUB1,CCDC138,CHCHD5,CKAP2L,EDAR,FBLN7,GCC2,IL1A,IL1B,IL36A,IL36G,IL37,LIMS1,LIMS3,LIMS3L,MALL,MERTK,NPHP1,POLR1B,RANBP2,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SOWAHC,SULT1C4,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AA.A02F.01A	2	109002601	128753872	778	0.1125	NEUTRAL	NA	86	"ACOXL,ACTR3,AMMECR1L,ANAPC1,BCL2L11,BIN1,BUB1,C1QL2,C2orf76,CBWD2,CCDC138,CCDC93,CFAP221,CHCHD5,CKAP2L,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EDAR,EN1,EPB41L5,ERCC3,FBLN7,FOXD4L1,GCC2,GLI2,GPR17,GYPC,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INHBB,INSIG2,IWS1,LIMS1,LIMS2,LIMS3,LIMS3L,MALL,MAP3K2,MARCO,MERTK,MYO7B,NIFK,NPHP1,PAX8,POLR1B,POLR2D,PROC,PSD4,PTPN4,RABL2A,RALB,RANBP2,RGPD5,RGPD6,RGPD8,SAP130,SCTR,SEPT10,SFT2D3,SH3RF3,SLC20A1,SLC35F5,SOWAHC,STEAP3,SULT1C4,TFCP2L1,TMEM177,TMEM185B,TMEM37,TMEM87B,TSN,TTL,WDR33,ZC3H6,ZC3H8"
TCGA.AG.3909.01A	2	109085389	109384553	42	0.2227	NEUTRAL	NA	3	"GCC2,LIMS1,RANBP2"
TCGA.AA.3509.01A	2	109089253	114398881	424	-0.0522	NEUTRAL	NA	43	"ACOXL,ANAPC1,BCL2L11,BUB1,CBWD2,CCDC138,CHCHD5,CKAP2L,EDAR,FBLN7,FOXD4L1,GCC2,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,LIMS1,LIMS3,LIMS3L,MALL,MERTK,NPHP1,PAX8,POLR1B,PSD4,RABL2A,RANBP2,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SOWAHC,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AZ.4684.01A	2	109089253	114398881	424	-0.0112	NEUTRAL	NA	43	"ACOXL,ANAPC1,BCL2L11,BUB1,CBWD2,CCDC138,CHCHD5,CKAP2L,EDAR,FBLN7,FOXD4L1,GCC2,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,LIMS1,LIMS3,LIMS3L,MALL,MERTK,NPHP1,PAX8,POLR1B,PSD4,RABL2A,RANBP2,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SOWAHC,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.EI.7004	2	109140219	171162919	17343	-0.0922	NEUTRAL	NA	226	Too-Many
TCGA.AA.A010.01A	2	109363154	109492527	34	-0.1558	NEUTRAL	NA	2	"CCDC138,RANBP2"
TCGA.AG.4009.01A	2	109374857	109432350	23	-0.4466	NEUTRAL	NA	2	"CCDC138,RANBP2"
TCGA.AG.3909.01A	2	109388180	109392156	4	-0.2503	NEUTRAL	NA	1	RANBP2
TCGA.AA.3861.01A	2	109388180	111921663	127	0.0206	NEUTRAL	NA	15	"ACOXL,BCL2L11,BUB1,CCDC138,EDAR,LIMS3,LIMS3L,MALL,NPHP1,RANBP2,RGPD5,RGPD6,SEPT10,SH3RF3,SOWAHC"
TCGA.AA.3862.01A	2	109388180	111921663	128	0.1079	NEUTRAL	NA	15	"ACOXL,BCL2L11,BUB1,CCDC138,EDAR,LIMS3,LIMS3L,MALL,NPHP1,RANBP2,RGPD5,RGPD6,SEPT10,SH3RF3,SOWAHC"
TCGA.CK.5914.01A	2	109388180	116535286	431	0.3245	NEUTRAL	NA	44	"ACOXL,ACTR3,ANAPC1,BCL2L11,BUB1,CBWD2,CCDC138,CHCHD5,CKAP2L,DPP10,EDAR,FBLN7,FOXD4L1,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,LIMS3,LIMS3L,MALL,MERTK,NPHP1,PAX8,POLR1B,PSD4,RABL2A,RANBP2,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SLC20A1,SLC35F5,SOWAHC,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AA.A02E.01A	2	109400015	162224244	1935	0.1416	NEUTRAL	NA	183	Too-Many
TCGA.AG.3909.01A	2	109414856	112630149	135	0.1552	NEUTRAL	NA	15	"ACOXL,ANAPC1,BCL2L11,BUB1,CCDC138,EDAR,LIMS3,LIMS3L,MALL,NPHP1,RGPD5,RGPD6,SEPT10,SH3RF3,SOWAHC"
TCGA.AA.A00N.01A	2	109421293	109492527	8	0.0845	NEUTRAL	NA	1	CCDC138
TCGA.AG.4009.01A	2	109455601	113346388	223	0.0315	NEUTRAL	NA	24	"ACOXL,ANAPC1,BCL2L11,BUB1,CCDC138,CHCHD5,EDAR,FBLN7,LIMS3,LIMS3L,MALL,MERTK,NPHP1,POLR1B,RGPD5,RGPD6,RGPD8,SEPT10,SH3RF3,SOWAHC,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AG.3891.01A	2	109513375	110065586	17	-0.4263	NEUTRAL	NA	2	"EDAR,SH3RF3"
TCGA.AA.A00L.01A	2	109527260	110920592	25	-0.2001	NEUTRAL	NA	10	"EDAR,LIMS3,LIMS3L,MALL,NPHP1,RGPD5,RGPD6,SEPT10,SH3RF3,SOWAHC"
TCGA.AG.4008	2	109588355	243048759	38240	-0.0045	NEUTRAL	NA	650	Too-Many
TCGA.AG.3891.01A	2	110259051	112870400	150	0.0128	NEUTRAL	NA	15	"ACOXL,ANAPC1,BCL2L11,BUB1,LIMS3,LIMS3L,MALL,MERTK,NPHP1,RGPD5,RGPD6,SEPT10,SH3RF3,SOWAHC,TMEM87B"
TCGA.AA.A010.01A	2	110303590	111426978	53	-0.2201	NEUTRAL	NA	9	"BUB1,LIMS3,LIMS3L,MALL,NPHP1,RGPD5,RGPD6,SEPT10,SOWAHC"
TCGA.DM.A288	2	110396323	131604404	5942	0.098	NEUTRAL	NA	94	"ACOXL,ACTR3,AMER3,AMMECR1L,ANAPC1,BCL2L11,BIN1,BUB1,C1QL2,C2orf76,CBWD2,CCDC115,CCDC74B,CCDC93,CFAP221,CFC1,CFC1B,CHCHD5,CKAP2L,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EN1,EPB41L5,ERCC3,FBLN7,FOXD4L1,GLI2,GPR148,GPR17,GYPC,HS6ST1,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,IMP4,INHBB,INSIG2,IWS1,LIMS2,LIMS3,LIMS3L,MALL,MAP3K2,MARCO,MERTK,MYO7B,MZT2B,NIFK,NPHP1,PAX8,POLR1B,POLR2D,POTEF,POTEI,POTEJ,PROC,PSD4,PTPN18,PTPN4,RAB6C,RABL2A,RALB,RGPD5,RGPD6,RGPD8,SAP130,SCTR,SFT2D3,SLC20A1,SLC35F5,SMPD4,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TMEM87B,TSN,TTL,TUBA3E,UGGT1,WDR33,ZC3H6,ZC3H8"
TCGA.DC.4745	2	110825224	243048759	38276	0	NEUTRAL	NA	646	Too-Many
TCGA.AA.A00N.01A	2	110849133	112622335	104	0.069	NEUTRAL	NA	10	"ACOXL,ANAPC1,BCL2L11,BUB1,LIMS3,LIMS3L,MALL,NPHP1,RGPD5,RGPD6"
TCGA.AA.A00Q.01A	2	111395490	111921663	39	-0.456	NEUTRAL	NA	3	"ACOXL,BCL2L11,BUB1"
TCGA.A6.3808.01A	2	111415071	111921663	40	0.0081	NEUTRAL	NA	3	"ACOXL,BCL2L11,BUB1"
TCGA.5M.AAT5	2	111794387	111798823	10	-0.4731	NEUTRAL	NA	1	ACOXL
TCGA.5M.AAT5	2	111800679	142582262	9233	0.0128	NEUTRAL	NA	120	Too-Many
TCGA.AA.3558	2	112317364	243048759	38023	-0.0314	NEUTRAL	NA	638	Too-Many
TCGA.F4.6461	2	112425539	243048759	37891	-0.0075	NEUTRAL	NA	638	Too-Many
TCGA.AA.A00Q.01A	2	112526820	112761422	40	-0.0283	NEUTRAL	NA	2	"ANAPC1,MERTK"
TCGA.AA.A00L.01A	2	112529870	112638143	23	0.2328	NEUTRAL	NA	1	ANAPC1
TCGA.AA.A00A.01A	2	112529870	112702520	24	-0.0069	NEUTRAL	NA	2	"ANAPC1,MERTK"
TCGA.A6.3808.01A	2	112656244	113033486	54	0.3401	NEUTRAL	NA	5	"FBLN7,MERTK,TMEM87B,ZC3H6,ZC3H8"
TCGA.AA.3861.01A	2	112656244	113033486	53	-0.4715	NEUTRAL	NA	5	"FBLN7,MERTK,TMEM87B,ZC3H6,ZC3H8"
TCGA.AA.3862.01A	2	112656244	113033486	53	-0.3658	NEUTRAL	NA	5	"FBLN7,MERTK,TMEM87B,ZC3H6,ZC3H8"
TCGA.AA.A00L.01A	2	112686645	113958686	146	-0.4172	NEUTRAL	NA	22	"CHCHD5,CKAP2L,FBLN7,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,MERTK,POLR1B,PSD4,RGPD5,RGPD8,SLC20A1,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AA.A00A.01A	2	112704923	179606031	2165	-0.4542	NEUTRAL	NA	265	Too-Many
TCGA.AA.A00Q.01A	2	112765920	113958686	133	-0.4277	NEUTRAL	NA	22	"CHCHD5,CKAP2L,FBLN7,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,MERTK,POLR1B,PSD4,RGPD5,RGPD8,SLC20A1,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.AG.3909.01A	2	112776941	112873654	21	0.1119	NEUTRAL	NA	2	"MERTK,TMEM87B"
TCGA.AA.A00N.01A	2	112813122	113060759	37	-0.4133	NEUTRAL	NA	4	"FBLN7,TMEM87B,ZC3H6,ZC3H8"
TCGA.AA.A010.01A	2	112817483	113074781	39	-0.2848	NEUTRAL	NA	4	"FBLN7,TMEM87B,ZC3H6,ZC3H8"
TCGA.AG.3891.01A	2	112873654	112942736	7	-0.5088	NEUTRAL	NA	2	"FBLN7,TMEM87B"
TCGA.AG.3909.01A	2	112896169	113012435	14	-0.4554	NEUTRAL	NA	2	"FBLN7,ZC3H8"
TCGA.AG.3891.01A	2	112944674	116503614	189	-0.0314	NEUTRAL	NA	27	"ACTR3,CBWD2,CHCHD5,CKAP2L,DPP10,FBLN7,FOXD4L1,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,PAX8,POLR1B,PSD4,RABL2A,RGPD5,RGPD8,SLC20A1,SLC35F5,TTL,ZC3H6,ZC3H8"
TCGA.AG.3909.01A	2	113057378	113277812	20	0.3374	NEUTRAL	NA	4	"RGPD5,RGPD8,TTL,ZC3H6"
TCGA.AA.A010.01A	2	113079286	113147616	9	0.3551	NEUTRAL	NA	3	"RGPD5,RGPD8,ZC3H6"
TCGA.A6.3808.01A	2	113277812	113346388	21	0.1791	NEUTRAL	NA	3	"CHCHD5,POLR1B,TTL"
TCGA.AA.3862.01A	2	113304549	114035859	120	-7.00E-04	NEUTRAL	NA	15	"CHCHD5,CKAP2L,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,PAX8,POLR1B,PSD4,SLC20A1"
TCGA.AA.3861.01A	2	113304549	127811434	466	0.0639	NEUTRAL	NA	47	"ACTR3,BIN1,C1QL2,C2orf76,CBWD2,CCDC93,CFAP221,CHCHD5,CKAP2L,CLASP1,CNTNAP5,DBI,DDX18,DPP10,EN1,EPB41L5,FOXD4L1,GLI2,GYPC,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INHBB,INSIG2,MARCO,NIFK,PAX8,POLR1B,PSD4,PTPN4,RABL2A,RALB,SCTR,SLC20A1,SLC35F5,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN"
TCGA.AG.3909.01A	2	113315470	113332412	8	0.0104	NEUTRAL	NA	1	POLR1B
TCGA.AA.A00F.01A	2	113332785	113346388	4	-0.3057	NEUTRAL	NA	2	"CHCHD5,POLR1B"
TCGA.AG.3909.01A	2	113414553	113503949	11	-0.2808	NEUTRAL	NA	2	"CKAP2L,SLC20A1"
TCGA.AA.A00F.01A	2	113414553	122042558	301	-0.0114	NEUTRAL	NA	39	"ACTR3,C1QL2,C2orf76,CBWD2,CCDC93,CFAP221,CKAP2L,DBI,DDX18,DPP10,EN1,EPB41L5,FOXD4L1,GLI2,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,INHBB,INSIG2,MARCO,PAX8,PSD4,PTPN4,RABL2A,RALB,SCTR,SLC20A1,SLC35F5,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37"
TCGA.AG.4009.01A	2	113416804	113420424	4	-0.3173	NEUTRAL	NA	1	SLC20A1
TCGA.AA.3660	2	113470485	201689741	24838	-0.0228	NEUTRAL	NA	331	Too-Many
TCGA.AG.3898	2	113485699	243048759	37624	0.2205	NEUTRAL	NA	626	Too-Many
TCGA.AG.4009.01A	2	113496388	113890216	55	0.2205	NEUTRAL	NA	10	"CKAP2L,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37"
TCGA.AA.A00N.01A	2	113522056	113588831	9	0.003	NEUTRAL	NA	3	"CKAP2L,IL1A,IL1B"
TCGA.AG.3909.01A	2	113522056	113590187	10	-0.0234	NEUTRAL	NA	3	"CKAP2L,IL1A,IL1B"
TCGA.AG.3909.01A	2	113736143	113939982	28	0.153	NEUTRAL	NA	7	"IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,PSD4"
TCGA.AA.3982	2	113785841	114980504	387	0.1048	NEUTRAL	NA	11	"ACTR3,CBWD2,FOXD4L1,IL1F10,IL1RN,IL36B,IL36RN,PAX8,PSD4,RABL2A,SLC35F5"
TCGA.AA.3844	2	113787355	114971912	384	0.0597	NEUTRAL	NA	11	"ACTR3,CBWD2,FOXD4L1,IL1F10,IL1RN,IL36B,IL36RN,PAX8,PSD4,RABL2A,SLC35F5"
TCGA.AA.A00N.01A	2	113875504	114257871	40	-0.1947	NEUTRAL	NA	5	"CBWD2,FOXD4L1,IL1RN,PAX8,PSD4"
TCGA.AA.A010.01A	2	113877584	114004314	29	-0.2563	NEUTRAL	NA	3	"IL1RN,PAX8,PSD4"
TCGA.AG.4009.01A	2	113939982	113955090	11	-0.3002	NEUTRAL	NA	1	PSD4
TCGA.AG.3909.01A	2	113942507	114512701	53	-0.3008	NEUTRAL	NA	6	"CBWD2,FOXD4L1,PAX8,PSD4,RABL2A,SLC35F5"
TCGA.AG.4009.01A	2	113956306	114004314	10	0.2445	NEUTRAL	NA	2	"PAX8,PSD4"
TCGA.AA.A01Q.01A	2	113984740	121036229	211	0.0548	NEUTRAL	NA	24	"ACTR3,C1QL2,C2orf76,CBWD2,CCDC93,CFAP221,DBI,DDX18,DPP10,EN1,EPB41L5,FOXD4L1,INSIG2,MARCO,PAX8,PTPN4,RABL2A,RALB,SCTR,SLC35F5,STEAP3,TMEM177,TMEM185B,TMEM37"
TCGA.AA.A00L.01A	2	114000214	114399568	13	0.2087	NEUTRAL	NA	4	"CBWD2,FOXD4L1,PAX8,RABL2A"
TCGA.AA.A00Q.01A	2	114001987	114482918	15	0.304	NEUTRAL	NA	5	"CBWD2,FOXD4L1,PAX8,RABL2A,SLC35F5"
TCGA.AA.A01F.01A	2	114001987	160721293	1081	0.1169	NEUTRAL	NA	141	Too-Many
TCGA.AG.4009.01A	2	114035859	114399568	19	-0.1159	NEUTRAL	NA	4	"CBWD2,FOXD4L1,PAX8,RABL2A"
TCGA.AG.A011.01A	2	114212235	114500282	22	0.3009	NEUTRAL	NA	4	"CBWD2,FOXD4L1,RABL2A,SLC35F5"
TCGA.CM.5349	2	114325088	121086678	2015	-0.0239	NEUTRAL	NA	21	"ACTR3,C1QL2,C2orf76,CCDC93,CFAP221,DBI,DDX18,DPP10,EN1,EPB41L5,INSIG2,MARCO,PTPN4,RABL2A,RALB,SCTR,SLC35F5,STEAP3,TMEM177,TMEM185B,TMEM37"
TCGA.G4.6295	2	114325088	138233595	7189	0.2899	NEUTRAL	NA	88	"ACMSD,ACTR3,AMER3,AMMECR1L,ARHGEF4,BIN1,C1QL2,C2orf27A,C2orf27B,C2orf76,CCDC115,CCDC74A,CCDC74B,CCDC93,CCNT2,CFAP221,CFC1,CFC1B,CLASP1,CNTNAP5,CXCR4,CYP27C1,DARS,DBI,DDX18,DPP10,EN1,EPB41L5,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GYPC,HS6ST1,IMP4,INHBB,INSIG2,IWS1,LCT,LIMS2,LYPD1,MAP3K19,MAP3K2,MARCO,MCM6,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,PTPN4,R3HDM1,RAB3GAP1,RAB6C,RABL2A,RALB,SAP130,SCTR,SFT2D3,SLC35F5,SMPD4,STEAP3,TFCP2L1,THSD7B,TMEM163,TMEM177,TMEM185B,TMEM37,TSN,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZNF806,ZRANB3"
TCGA.AA.3712	2	114325088	243048759	37467	0	NEUTRAL	NA	612	Too-Many
TCGA.AD.6888	2	114325088	243048759	37425	0.2491	NEUTRAL	NA	612	Too-Many
TCGA.EI.6885	2	114327182	153292173	11320	0.1943	NEUTRAL	NA	114	Too-Many
TCGA.AF.5654	2	114327182	228546371	32776	0.3689	NEUTRAL	NA	485	Too-Many
TCGA.CI.6624	2	114327182	243048759	37393	0.0306	NEUTRAL	NA	612	Too-Many
TCGA.EI.6514	2	114327182	243048759	37416	0.2158	NEUTRAL	NA	612	Too-Many
TCGA.G4.6303	2	114327182	243048759	37464	0.0015	NEUTRAL	NA	612	Too-Many
TCGA.G5.6572	2	114327182	243048759	37393	0.3529	NEUTRAL	NA	612	Too-Many
TCGA.AH.6897	2	114331774	226306992	32117	0.2761	NEUTRAL	NA	477	Too-Many
TCGA.AA.A010.01A	2	114391673	114475292	8	-0.348	NEUTRAL	NA	2	"RABL2A,SLC35F5"
TCGA.AG.3882	2	114422970	219450088	29824	0.1054	NEUTRAL	NA	418	Too-Many
TCGA.AA.3819	2	114422970	243048759	37478	0.0076	NEUTRAL	NA	611	Too-Many
TCGA.AG.4009.01A	2	114475292	114493314	8	-0.4576	NEUTRAL	NA	1	SLC35F5
TCGA.A6.3808.01A	2	114475292	128338283	411	0.222	NEUTRAL	NA	35	"ACTR3,BIN1,C1QL2,C2orf76,CCDC93,CFAP221,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EN1,EPB41L5,ERCC3,GLI2,GYPC,INHBB,INSIG2,IWS1,MAP3K2,MARCO,MYO7B,NIFK,PROC,PTPN4,RALB,SCTR,SLC35F5,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN"
TCGA.AA.A00L.01A	2	114475292	130913570	430	-0.4016	NEUTRAL	NA	48	"ACTR3,AMMECR1L,BIN1,C1QL2,C2orf76,CCDC74B,CCDC93,CFAP221,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EN1,EPB41L5,ERCC3,GLI2,GPR17,GYPC,HS6ST1,INHBB,INSIG2,IWS1,LIMS2,MAP3K2,MARCO,MYO7B,NIFK,POLR2D,POTEF,PROC,PTPN4,RAB6C,RALB,SAP130,SCTR,SFT2D3,SLC35F5,SMPD4,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN,UGGT1,WDR33"
TCGA.AA.A00Q.01A	2	114486941	128934331	395	-0.3462	NEUTRAL	NA	43	"ACTR3,AMMECR1L,BIN1,C1QL2,C2orf76,CCDC93,CFAP221,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EN1,EPB41L5,ERCC3,GLI2,GPR17,GYPC,INHBB,INSIG2,IWS1,LIMS2,MAP3K2,MARCO,MYO7B,NIFK,POLR2D,PROC,PTPN4,RALB,SAP130,SCTR,SFT2D3,SLC35F5,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN,UGGT1,WDR33"
TCGA.AG.4009.01A	2	114500282	120003035	98	0.0336	NEUTRAL	NA	10	"ACTR3,C1QL2,CCDC93,DDX18,DPP10,EN1,INSIG2,MARCO,SLC35F5,STEAP3"
TCGA.AA.A010.01A	2	114500282	121712784	213	0.2513	NEUTRAL	NA	22	"ACTR3,C1QL2,C2orf76,CCDC93,CFAP221,DBI,DDX18,DPP10,EN1,EPB41L5,GLI2,INHBB,INSIG2,MARCO,PTPN4,RALB,SCTR,SLC35F5,STEAP3,TMEM177,TMEM185B,TMEM37"
TCGA.AG.A011.01A	2	114501239	153529427	1295	0.0032	NEUTRAL	NA	114	Too-Many
TCGA.AG.3909.01A	2	114670680	114714888	11	0.0601	NEUTRAL	NA	1	ACTR3
TCGA.AA.3862.01A	2	114709306	128944245	522	-0.0364	NEUTRAL	NA	42	"ACTR3,AMMECR1L,BIN1,C1QL2,C2orf76,CCDC93,CFAP221,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EN1,EPB41L5,ERCC3,GLI2,GPR17,GYPC,INHBB,INSIG2,IWS1,LIMS2,MAP3K2,MARCO,MYO7B,NIFK,POLR2D,PROC,PTPN4,RALB,SAP130,SCTR,SFT2D3,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN,UGGT1,WDR33"
TCGA.AA.3844	2	114976113	118209114	852	-0.505	NEUTRAL	NA	1	DPP10
TCGA.AA.3941	2	114976113	118365399	909	-0.4691	NEUTRAL	NA	1	DPP10
TCGA.AA.3982	2	114983369	118365399	905	-0.4147	NEUTRAL	NA	1	DPP10
TCGA.AA.3811	2	115118071	118369930	876	-0.227	NEUTRAL	NA	1	DPP10
TCGA.EI.6508	2	115257549	133497340	5276	-0.0409	NEUTRAL	NA	71	"AMER3,AMMECR1L,ARHGEF4,BIN1,C1QL2,C2orf27A,C2orf27B,C2orf76,CCDC115,CCDC74A,CCDC74B,CCDC93,CFAP221,CFC1,CFC1B,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,DPP10,EN1,EPB41L5,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GYPC,HS6ST1,IMP4,INHBB,INSIG2,IWS1,LIMS2,LYPD1,MAP3K2,MARCO,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,PTPN4,RAB6C,RALB,SAP130,SCTR,SFT2D3,SMPD4,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN,TUBA3D,TUBA3E,UGGT1,WDR33,WTH3DI,ZNF806"
TCGA.F5.6464	2	115257549	243048759	37215	0.2698	NEUTRAL	NA	609	Too-Many
TCGA.AG.3891.01A	2	116510723	118572299	15	-0.442	NEUTRAL	NA	2	"DDX18,DPP10"
TCGA.CA.5254	2	116514702	118649428	622	0.3122	NEUTRAL	NA	2	"DDX18,DPP10"
TCGA.AG.3909.01A	2	116525821	116599740	12	-0.056	NEUTRAL	NA	1	DPP10
TCGA.DM.A28M.01A	2	116598266	120692359	129	-0.1688	NEUTRAL	NA	15	"C1QL2,C2orf76,CCDC93,CFAP221,DBI,DDX18,DPP10,EN1,INSIG2,MARCO,PTPN4,SCTR,STEAP3,TMEM177,TMEM37"
TCGA.AA.3529	2	117644383	121687128	1363	-0.0067	NEUTRAL	NA	19	"C1QL2,C2orf76,CCDC93,CFAP221,DBI,DDX18,EN1,EPB41L5,GLI2,INHBB,INSIG2,MARCO,PTPN4,RALB,SCTR,STEAP3,TMEM177,TMEM185B,TMEM37"
TCGA.AA.3867	2	117806159	118131067	87	-0.0538	NEUTRAL	NA	0	None
TCGA.AA.3544	2	117806159	122204431	1512	0.0593	NEUTRAL	NA	21	"C1QL2,C2orf76,CCDC93,CFAP221,CLASP1,DBI,DDX18,EN1,EPB41L5,GLI2,INHBB,INSIG2,MARCO,PTPN4,RALB,SCTR,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37"
TCGA.AA.3867	2	118131772	118813946	277	0.2164	NEUTRAL	NA	2	"CCDC93,DDX18"
TCGA.AA.3844	2	118212352	122934380	1517	0.0614	NEUTRAL	NA	23	"C1QL2,C2orf76,CCDC93,CFAP221,CLASP1,DBI,DDX18,EN1,EPB41L5,GLI2,INHBB,INSIG2,MARCO,NIFK,PTPN4,RALB,SCTR,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN"
TCGA.AA.3850	2	118360495	119751643	566	0.03065	NEUTRAL	NA	5	"CCDC93,DDX18,EN1,INSIG2,MARCO"
TCGA.AA.3982	2	118366903	120862452	889	0.1107	NEUTRAL	NA	15	"C1QL2,C2orf76,CCDC93,CFAP221,DBI,DDX18,EN1,EPB41L5,INSIG2,MARCO,PTPN4,SCTR,STEAP3,TMEM177,TMEM37"
TCGA.AA.3941	2	118366903	123051774	1506	0.2978	NEUTRAL	NA	23	"C1QL2,C2orf76,CCDC93,CFAP221,CLASP1,DBI,DDX18,EN1,EPB41L5,GLI2,INHBB,INSIG2,MARCO,NIFK,PTPN4,RALB,SCTR,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN"
TCGA.AA.3811	2	118369944	122934728	1459	0.2345	NEUTRAL	NA	23	"C1QL2,C2orf76,CCDC93,CFAP221,CLASP1,DBI,DDX18,EN1,EPB41L5,GLI2,INHBB,INSIG2,MARCO,NIFK,PTPN4,RALB,SCTR,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN"
TCGA.D5.6539	2	118475543	243048759	36222	-0.0082	NEUTRAL	NA	608	Too-Many
TCGA.AG.3891.01A	2	118574978	121726243	158	-0.1173	NEUTRAL	NA	19	"C1QL2,C2orf76,CCDC93,CFAP221,DBI,DDX18,EN1,EPB41L5,GLI2,INHBB,INSIG2,MARCO,PTPN4,RALB,SCTR,STEAP3,TMEM177,TMEM185B,TMEM37"
TCGA.AZ.4684.01A	2	118582476	120443166	107	-0.1066	NEUTRAL	NA	13	"C1QL2,C2orf76,CCDC93,CFAP221,DBI,DDX18,EN1,INSIG2,MARCO,SCTR,STEAP3,TMEM177,TMEM37"
TCGA.AA.3509.01A	2	118582476	138738799	877	0.0198	NEUTRAL	NA	85	"ACMSD,AMER3,AMMECR1L,ARHGEF4,BIN1,C1QL2,C2orf27A,C2orf27B,C2orf76,CCDC115,CCDC74A,CCDC74B,CCDC93,CCNT2,CFAP221,CFC1,CFC1B,CLASP1,CNTNAP5,CXCR4,CYP27C1,DARS,DBI,DDX18,EN1,EPB41L5,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GYPC,HNMT,HS6ST1,IMP4,INHBB,INSIG2,IWS1,LCT,LIMS2,LYPD1,MAP3K19,MAP3K2,MARCO,MCM6,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,PTPN4,R3HDM1,RAB3GAP1,RAB6C,RALB,SAP130,SCTR,SFT2D3,SMPD4,STEAP3,TFCP2L1,THSD7B,TMEM163,TMEM177,TMEM185B,TMEM37,TSN,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZNF806,ZRANB3"
TCGA.AG.A015.01A	2	118586823	128324206	316	-0.1296	NEUTRAL	NA	32	"BIN1,C1QL2,C2orf76,CCDC93,CFAP221,CLASP1,CNTNAP5,CYP27C1,DBI,DDX18,EN1,EPB41L5,ERCC3,GLI2,GYPC,INHBB,INSIG2,IWS1,MAP3K2,MARCO,MYO7B,NIFK,PROC,PTPN4,RALB,SCTR,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN"
TCGA.CA.5254	2	118666408	151155567	9404	-0.4778	NEUTRAL	NA	99	"ACMSD,ACVR2A,AMER3,AMMECR1L,ARHGAP15,ARHGEF4,BIN1,C1QL2,C2orf27A,C2orf27B,C2orf76,CCDC115,CCDC74A,CCDC74B,CCDC93,CCNT2,CFAP221,CFC1,CFC1B,CLASP1,CNTNAP5,CXCR4,CYP27C1,DARS,DBI,EN1,EPB41L5,EPC2,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GTDC1,GYPC,HNMT,HS6ST1,IMP4,INHBB,INSIG2,IWS1,KIF5C,KYNU,LCT,LIMS2,LRP1B,LYPD1,LYPD6,LYPD6B,MAP3K19,MAP3K2,MARCO,MBD5,MCM6,MGAT5,MMADHC,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,NXPH2,ORC4,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,PTPN4,R3HDM1,RAB3GAP1,RAB6C,RALB,SAP130,SCTR,SFT2D3,SMPD4,SPOPL,STEAP3,TFCP2L1,THSD7B,TMEM163,TMEM177,TMEM185B,TMEM37,TSN,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZEB2,ZNF806,ZRANB3"
TCGA.AG.3909.01A	2	118735487	119603884	14	0.0617	NEUTRAL	NA	3	"CCDC93,EN1,INSIG2"
TCGA.AA.A00D.01A	2	118743508	119699839	15	-0.511	NEUTRAL	NA	4	"CCDC93,EN1,INSIG2,MARCO"
TCGA.CK.5914.01A	2	118758346	119603884	11	0.0487	NEUTRAL	NA	3	"CCDC93,EN1,INSIG2"
TCGA.AA.3867	2	118814867	118827894	6	-0.2989	NEUTRAL	NA	0	None
TCGA.AA.3867	2	118831935	121886825	1037	0.2478	NEUTRAL	NA	17	"C1QL2,C2orf76,CFAP221,DBI,EN1,EPB41L5,GLI2,INHBB,INSIG2,MARCO,PTPN4,RALB,SCTR,STEAP3,TMEM177,TMEM185B,TMEM37"
TCGA.AA.A00D.01A	2	119735362	133887501	377	-0.3557	NEUTRAL	NA	66	"AMER3,AMMECR1L,ARHGEF4,BIN1,C1QL2,C2orf27A,C2orf27B,C2orf76,CCDC115,CCDC74A,CCDC74B,CFAP221,CFC1,CFC1B,CLASP1,CNTNAP5,CYP27C1,DBI,EPB41L5,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GYPC,HS6ST1,IMP4,INHBB,IWS1,LIMS2,LYPD1,MAP3K2,MARCO,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,PTPN4,RAB6C,RALB,SAP130,SCTR,SFT2D3,SMPD4,STEAP3,TFCP2L1,TMEM177,TMEM185B,TMEM37,TSN,TUBA3D,TUBA3E,UGGT1,WDR33,WTH3DI,ZNF806"
TCGA.AA.A00N.01A	2	119749934	120125094	20	-0.1233	NEUTRAL	NA	5	"C1QL2,C2orf76,DBI,MARCO,STEAP3"
TCGA.AA.3850	2	119751866	120662104	310	0.31725	NEUTRAL	NA	10	"C1QL2,C2orf76,CFAP221,DBI,MARCO,PTPN4,SCTR,STEAP3,TMEM177,TMEM37"
TCGA.4N.A93T	2	119844556	243048759	35768	0.0208	NEUTRAL	NA	603	Too-Many
TCGA.AG.A00C.01A	2	120125094	120210802	12	0.3125	NEUTRAL	NA	3	"DBI,SCTR,TMEM37"
TCGA.AG.4009.01A	2	120129770	121727947	86	0.0592	NEUTRAL	NA	11	"CFAP221,DBI,EPB41L5,GLI2,INHBB,PTPN4,RALB,SCTR,TMEM177,TMEM185B,TMEM37"
TCGA.AA.A00N.01A	2	120194436	120210802	7	-0.3997	NEUTRAL	NA	2	"SCTR,TMEM37"
TCGA.AG.3909.01A	2	120197652	122485800	147	0.2557	NEUTRAL	NA	12	"CFAP221,CLASP1,EPB41L5,GLI2,INHBB,NIFK,PTPN4,RALB,SCTR,TFCP2L1,TMEM177,TMEM185B"
TCGA.AG.A02X.01A	2	120209519	122283371	135	0.3176	NEUTRAL	NA	11	"CFAP221,CLASP1,EPB41L5,GLI2,INHBB,PTPN4,RALB,SCTR,TFCP2L1,TMEM177,TMEM185B"
TCGA.AG.A00C.01A	2	120219376	122363295	138	-0.1326	NEUTRAL	NA	11	"CFAP221,CLASP1,EPB41L5,GLI2,INHBB,PTPN4,RALB,SCTR,TFCP2L1,TMEM177,TMEM185B"
TCGA.DM.A28M.01A	2	120709501	131331855	443	-0.1408	NEUTRAL	NA	39	"AMMECR1L,BIN1,CCDC115,CCDC74B,CFC1B,CLASP1,CNTNAP5,CYP27C1,EPB41L5,ERCC3,GLI2,GPR17,GYPC,HS6ST1,IMP4,INHBB,IWS1,LIMS2,MAP3K2,MYO7B,MZT2B,NIFK,POLR2D,POTEF,POTEI,PROC,PTPN18,PTPN4,RAB6C,RALB,SAP130,SFT2D3,SMPD4,TFCP2L1,TMEM185B,TSN,TUBA3E,UGGT1,WDR33"
TCGA.AZ.4684.01A	2	120712721	136374195	635	0.0244	NEUTRAL	NA	65	"ACMSD,AMER3,AMMECR1L,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CLASP1,CNTNAP5,CYP27C1,EPB41L5,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GYPC,HS6ST1,IMP4,INHBB,IWS1,LIMS2,LYPD1,MAP3K19,MAP3K2,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,PTPN4,R3HDM1,RAB3GAP1,RAB6C,RALB,SAP130,SFT2D3,SMPD4,TFCP2L1,TMEM163,TMEM185B,TSN,TUBA3D,TUBA3E,UGGT1,WDR33,WTH3DI,ZNF806,ZRANB3"
TCGA.AA.3982	2	120919108	121645055	214	0.2715	NEUTRAL	NA	5	"EPB41L5,GLI2,INHBB,RALB,TMEM185B"
TCGA.AM.5820	2	120975830	122054962	391	0.3602	NEUTRAL	NA	5	"GLI2,INHBB,RALB,TFCP2L1,TMEM185B"
TCGA.AA.A01Q.01A	2	121043413	121997079	25	-0.5113	NEUTRAL	NA	4	"GLI2,INHBB,RALB,TFCP2L1"
TCGA.G4.6299	2	121353657	183528967	18030	-0.0268	NEUTRAL	NA	229	Too-Many
TCGA.AG.3727	2	121688691	130460095	2775	0.0083	NEUTRAL	NA	23	"AMMECR1L,BIN1,CLASP1,CNTNAP5,CYP27C1,ERCC3,GLI2,GPR17,GYPC,HS6ST1,IWS1,LIMS2,MAP3K2,MYO7B,NIFK,POLR2D,PROC,SAP130,SFT2D3,TFCP2L1,TSN,UGGT1,WDR33"
TCGA.AG.4009.01A	2	121729470	121746122	8	-0.5035	NEUTRAL	NA	1	GLI2
TCGA.AA.3529	2	121729969	133806231	3432	-0.0039	NEUTRAL	NA	52	"AMER3,AMMECR1L,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CFC1,CFC1B,CLASP1,CNTNAP5,CYP27C1,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GYPC,HS6ST1,IMP4,IWS1,LIMS2,LYPD1,MAP3K2,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,RAB6C,SAP130,SFT2D3,SMPD4,TFCP2L1,TSN,TUBA3D,TUBA3E,UGGT1,WDR33,WTH3DI,ZNF806"
TCGA.AA.3867	2	121897173	139748260	5285	0.1311	NEUTRAL	NA	68	"ACMSD,AMER3,AMMECR1L,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CLASP1,CNTNAP5,CXCR4,CYP27C1,DARS,ERCC3,FAM168B,GPR148,GPR17,GPR39,GYPC,HNMT,HS6ST1,IMP4,IWS1,LCT,LIMS2,LYPD1,MAP3K19,MAP3K2,MCM6,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,NXPH2,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,R3HDM1,RAB3GAP1,RAB6C,SAP130,SFT2D3,SMPD4,SPOPL,TFCP2L1,THSD7B,TMEM163,TSN,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZNF806,ZRANB3"
TCGA.AG.3906.01A	2	121981864	122098380	14	0.0577	NEUTRAL	NA	2	"CLASP1,TFCP2L1"
TCGA.AG.3891.01A	2	121981864	122484940	53	-0.1747	NEUTRAL	NA	3	"CLASP1,NIFK,TFCP2L1"
TCGA.AA.A010.01A	2	121981864	127951325	120	0.332	NEUTRAL	NA	8	"BIN1,CLASP1,CNTNAP5,CYP27C1,GYPC,NIFK,TFCP2L1,TSN"
TCGA.AG.4009.01A	2	121981864	128079574	133	0.1022	NEUTRAL	NA	10	"BIN1,CLASP1,CNTNAP5,CYP27C1,ERCC3,GYPC,MAP3K2,NIFK,TFCP2L1,TSN"
TCGA.AA.A01Q.01A	2	121999898	127453503	35	-0.001	NEUTRAL	NA	6	"CLASP1,CNTNAP5,GYPC,NIFK,TFCP2L1,TSN"
TCGA.AM.5820	2	122063743	233171486	31749	-0.0163	NEUTRAL	NA	491	Too-Many
TCGA.AA.3967.01A	2	122098380	122363295	39	-0.4138	NEUTRAL	NA	1	CLASP1
TCGA.AA.3982	2	122117737	123091119	211	0.1439	NEUTRAL	NA	3	"CLASP1,NIFK,TSN"
TCGA.AG.3906.01A	2	122135026	122484940	33	-0.0356	NEUTRAL	NA	2	"CLASP1,NIFK"
TCGA.CK.5914.01A	2	122273194	124783178	21	-0.2483	NEUTRAL	NA	4	"CLASP1,CNTNAP5,NIFK,TSN"
TCGA.AG.A02X.01A	2	122285324	178988831	2391	-0.2625	NEUTRAL	NA	210	Too-Many
TCGA.AA.A00F.01A	2	122485268	122522660	12	0.3532	NEUTRAL	NA	2	"NIFK,TSN"
TCGA.AG.3891.01A	2	122494270	128528305	171	-0.1517	NEUTRAL	NA	15	"BIN1,CNTNAP5,CYP27C1,ERCC3,GPR17,GYPC,IWS1,LIMS2,MAP3K2,MYO7B,NIFK,PROC,SFT2D3,TSN,WDR33"
TCGA.AG.3906.01A	2	122520574	128334153	104	-0.0099	NEUTRAL	NA	10	"BIN1,CNTNAP5,CYP27C1,ERCC3,GYPC,IWS1,MAP3K2,MYO7B,PROC,TSN"
TCGA.CM.5349	2	122578291	127860829	1679	-0.4591	NEUTRAL	NA	3	"BIN1,CNTNAP5,GYPC"
TCGA.AA.3844	2	122934650	127384734	1398	-0.3456	NEUTRAL	NA	1	CNTNAP5
TCGA.AA.3850	2	122934728	123492419	234	-0.19505	NEUTRAL	NA	0	None
TCGA.AA.3811	2	122934941	126675454	1233	-0.1717	NEUTRAL	NA	1	CNTNAP5
TCGA.AA.3941	2	123053517	127044903	1257	-0.3939	NEUTRAL	NA	1	CNTNAP5
TCGA.AA.3982	2	123091688	127080193	1255	-0.2959	NEUTRAL	NA	1	CNTNAP5
TCGA.T9.A92H	2	123825248	195809394	19923	0.0305	NEUTRAL	NA	262	Too-Many
TCGA.AG.A00C.01A	2	124783178	127453503	27	-0.3149	NEUTRAL	NA	2	"CNTNAP5,GYPC"
TCGA.AF.2691	2	124954857	132594680	1989	-0.3317	NEUTRAL	NA	43	"AMER3,AMMECR1L,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CFC1,CFC1B,CNTNAP5,CYP27C1,ERCC3,FAM168B,GPR148,GPR17,GYPC,HS6ST1,IMP4,IWS1,LIMS2,MAP3K2,MYO7B,MZT2A,MZT2B,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,RAB6C,SAP130,SFT2D3,SMPD4,TUBA3D,TUBA3E,UGGT1,WDR33,WTH3DI"
TCGA.F5.6863	2	125125172	125192067	27	-0.1347	NEUTRAL	NA	1	CNTNAP5
TCGA.F5.6863	2	125197318	243048759	33994	0.3712	NEUTRAL	NA	585	Too-Many
TCGA.AA.A00F.01A	2	125504768	127810909	13	-0.2163	NEUTRAL	NA	3	"BIN1,CNTNAP5,GYPC"
TCGA.DC.6157	2	125666821	131895229	1640	0.0802	NEUTRAL	NA	36	"AMER3,AMMECR1L,ARHGEF4,BIN1,CCDC115,CCDC74B,CFC1,CFC1B,CNTNAP5,CYP27C1,ERCC3,FAM168B,GPR148,GPR17,GYPC,HS6ST1,IMP4,IWS1,LIMS2,MAP3K2,MYO7B,MZT2B,PLEKHB2,POLR2D,POTEF,POTEI,POTEJ,PROC,PTPN18,RAB6C,SAP130,SFT2D3,SMPD4,TUBA3E,UGGT1,WDR33"
TCGA.AF.2693	2	125839591	126128432	58	-0.0014	NEUTRAL	NA	0	None
TCGA.AA.3811	2	126686490	137392823	3033	0.1304	NEUTRAL	NA	59	"ACMSD,AMER3,AMMECR1L,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CXCR4,CYP27C1,DARS,ERCC3,FAM168B,GPR148,GPR17,GPR39,GYPC,HS6ST1,IMP4,IWS1,LCT,LIMS2,LYPD1,MAP3K19,MAP3K2,MCM6,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,R3HDM1,RAB3GAP1,RAB6C,SAP130,SFT2D3,SMPD4,TMEM163,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZNF806,ZRANB3"
TCGA.AA.3850	2	127044903	127392973	100	-0.03165	NEUTRAL	NA	0	None
TCGA.AA.3941	2	127059922	127384734	98	0.0095	NEUTRAL	NA	0	None
TCGA.AA.3982	2	127081338	137280380	2918	0.0761	NEUTRAL	NA	59	"ACMSD,AMER3,AMMECR1L,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CXCR4,CYP27C1,DARS,ERCC3,FAM168B,GPR148,GPR17,GPR39,GYPC,HS6ST1,IMP4,IWS1,LCT,LIMS2,LYPD1,MAP3K19,MAP3K2,MCM6,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,R3HDM1,RAB3GAP1,RAB6C,SAP130,SFT2D3,SMPD4,TMEM163,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZNF806,ZRANB3"
TCGA.AA.3844	2	127392973	127499837	46	0.2035	NEUTRAL	NA	1	GYPC
TCGA.AA.3850	2	127414592	129888876	767	0.34325	NEUTRAL	NA	17	"AMMECR1L,BIN1,CYP27C1,ERCC3,GPR17,GYPC,HS6ST1,IWS1,LIMS2,MAP3K2,MYO7B,POLR2D,PROC,SAP130,SFT2D3,UGGT1,WDR33"
TCGA.A6.5667	2	127443957	243048759	33466	0.2438	NEUTRAL	NA	584	Too-Many
TCGA.AA.3844	2	127503456	127516505	10	-0.4991	NEUTRAL	NA	0	None
TCGA.AA.3844	2	127524035	129577381	596	0.1893	NEUTRAL	NA	16	"AMMECR1L,BIN1,CYP27C1,ERCC3,GPR17,HS6ST1,IWS1,LIMS2,MAP3K2,MYO7B,POLR2D,PROC,SAP130,SFT2D3,UGGT1,WDR33"
TCGA.CA.6715	2	127524035	136151411	2485	-0.0287	NEUTRAL	NA	52	"ACMSD,AMER3,AMMECR1L,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CYP27C1,ERCC3,FAM168B,GPR148,GPR17,GPR39,HS6ST1,IMP4,IWS1,LIMS2,LYPD1,MAP3K19,MAP3K2,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,RAB3GAP1,RAB6C,SAP130,SFT2D3,SMPD4,TMEM163,TUBA3D,TUBA3E,UGGT1,WDR33,WTH3DI,ZNF806,ZRANB3"
TCGA.AA.A00N.01A	2	127806060	128044270	34	-0.181	NEUTRAL	NA	3	"BIN1,CYP27C1,ERCC3"
TCGA.CK.5914.01A	2	127806060	128050134	38	-0.0757	NEUTRAL	NA	3	"BIN1,CYP27C1,ERCC3"
TCGA.AG.3909.01A	2	127806060	128317208	71	-0.0817	NEUTRAL	NA	7	"BIN1,CYP27C1,ERCC3,IWS1,MAP3K2,MYO7B,PROC"
TCGA.AG.A00C.01A	2	127806060	128522694	119	0.0175	NEUTRAL	NA	11	"BIN1,CYP27C1,ERCC3,GPR17,IWS1,LIMS2,MAP3K2,MYO7B,PROC,SFT2D3,WDR33"
TCGA.AA.3967.01A	2	127808377	128321681	71	0.0225	NEUTRAL	NA	7	"BIN1,CYP27C1,ERCC3,IWS1,MAP3K2,MYO7B,PROC"
TCGA.AA.A00F.01A	2	127811434	132509058	216	0.1156	NEUTRAL	NA	40	"AMER3,AMMECR1L,ARHGEF4,BIN1,C2orf27A,CCDC115,CCDC74A,CCDC74B,CFC1,CFC1B,CYP27C1,ERCC3,FAM168B,GPR148,GPR17,HS6ST1,IMP4,IWS1,LIMS2,MAP3K2,MYO7B,MZT2A,MZT2B,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,RAB6C,SAP130,SFT2D3,SMPD4,TUBA3D,TUBA3E,UGGT1,WDR33,WTH3DI"
TCGA.AA.3861.01A	2	127827522	128944245	207	-0.2467	NEUTRAL	NA	15	"AMMECR1L,BIN1,CYP27C1,ERCC3,GPR17,IWS1,LIMS2,MAP3K2,MYO7B,POLR2D,PROC,SAP130,SFT2D3,UGGT1,WDR33"
TCGA.CM.5349	2	127861905	243048759	33307	-0.0033	NEUTRAL	NA	583	Too-Many
TCGA.AA.A01Q.01A	2	127951325	128389128	44	0.2103	NEUTRAL	NA	6	"CYP27C1,ERCC3,IWS1,MAP3K2,MYO7B,PROC"
TCGA.AA.A00N.01A	2	128051062	128185885	23	-0.4201	NEUTRAL	NA	3	"ERCC3,MAP3K2,PROC"
TCGA.AA.A010.01A	2	128065107	128185885	21	-0.4266	NEUTRAL	NA	2	"MAP3K2,PROC"
TCGA.AG.4009.01A	2	128081427	128185885	14	-0.3838	NEUTRAL	NA	2	"MAP3K2,PROC"
TCGA.AG.A01W.01A	2	128195860	128380147	48	-0.0908	NEUTRAL	NA	2	"IWS1,MYO7B"
TCGA.AG.4009.01A	2	128238573	128398420	46	0.2013	NEUTRAL	NA	3	"IWS1,LIMS2,MYO7B"
TCGA.AA.3967.01A	2	128322759	128381621	23	-0.3288	NEUTRAL	NA	1	MYO7B
TCGA.AG.3906.01A	2	128335671	128466224	35	-0.3236	NEUTRAL	NA	5	"GPR17,LIMS2,MYO7B,SFT2D3,WDR33"
TCGA.AA.A00N.01A	2	128338283	128400459	40	-0.0645	NEUTRAL	NA	2	"LIMS2,MYO7B"
TCGA.CK.5914.01A	2	128339428	128400459	39	-0.1291	NEUTRAL	NA	2	"LIMS2,MYO7B"
TCGA.AG.3909.01A	2	128339842	128459061	38	-0.1004	NEUTRAL	NA	4	"GPR17,LIMS2,MYO7B,SFT2D3"
TCGA.AA.A010.01A	2	128353988	128391714	20	0.1525	NEUTRAL	NA	1	MYO7B
TCGA.AA.3930.01A	2	128385896	128467012	32	-0.4348	NEUTRAL	NA	5	"GPR17,LIMS2,MYO7B,SFT2D3,WDR33"
TCGA.AG.A015.01A	2	128387183	179549587	2471	-0.1521	NEUTRAL	NA	205	Too-Many
TCGA.AA.A02K.01A	2	128388752	128400452	16	-0.1627	NEUTRAL	NA	2	"LIMS2,MYO7B"
TCGA.AA.3967.01A	2	128389773	170335995	1769	-0.0931	NEUTRAL	NA	138	Too-Many
TCGA.AA.A010.01A	2	128392128	128400459	11	-0.372	NEUTRAL	NA	2	"LIMS2,MYO7B"
TCGA.AA.A01Q.01A	2	128396814	128414925	11	-0.5011	NEUTRAL	NA	2	"GPR17,LIMS2"
TCGA.AA.A02K.01A	2	128407519	131785482	192	0.2196	NEUTRAL	NA	25	"AMER3,AMMECR1L,ARHGEF4,CCDC115,CCDC74B,CFC1,CFC1B,GPR148,GPR17,HS6ST1,IMP4,LIMS2,MZT2B,POLR2D,POTEF,POTEI,POTEJ,PTPN18,RAB6C,SAP130,SFT2D3,SMPD4,TUBA3E,UGGT1,WDR33"
TCGA.AG.4009.01A	2	128408278	128783708	52	-0.3718	NEUTRAL	NA	7	"AMMECR1L,GPR17,LIMS2,POLR2D,SAP130,SFT2D3,WDR33"
TCGA.AG.A01W.01A	2	128416011	130588953	72	0.2917	NEUTRAL	NA	8	"AMMECR1L,HS6ST1,LIMS2,POLR2D,SAP130,SFT2D3,UGGT1,WDR33"
TCGA.A6.3808.01A	2	128432505	128944245	96	0.1788	NEUTRAL	NA	7	"AMMECR1L,LIMS2,POLR2D,SAP130,SFT2D3,UGGT1,WDR33"
TCGA.AA.A01Q.01A	2	128459061	130914787	107	0.101	NEUTRAL	NA	11	"AMMECR1L,CCDC74B,HS6ST1,POLR2D,POTEF,RAB6C,SAP130,SFT2D3,SMPD4,UGGT1,WDR33"
TCGA.CK.5914.01A	2	128463856	128631391	30	-0.0994	NEUTRAL	NA	3	"AMMECR1L,POLR2D,WDR33"
TCGA.AG.3906.01A	2	128467012	130738141	88	0.1086	NEUTRAL	NA	7	"AMMECR1L,HS6ST1,POLR2D,RAB6C,SAP130,UGGT1,WDR33"
TCGA.AA.3939.01A	2	128467012	145187307	609	-0.1502	NEUTRAL	NA	57	"ACMSD,AMER3,AMMECR1L,ARHGAP15,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CXCR4,DARS,FAM168B,GPR148,GPR39,GTDC1,HNMT,HS6ST1,IMP4,KYNU,LCT,LRP1B,LYPD1,MAP3K19,MCM6,MGAT5,MZT2A,MZT2B,NCKAP5,NXPH2,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PTPN18,R3HDM1,RAB3GAP1,RAB6C,SAP130,SMPD4,SPOPL,THSD7B,TMEM163,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZEB2,ZNF806,ZRANB3"
TCGA.AG.3909.01A	2	128471125	128528305	17	-0.0417	NEUTRAL	NA	1	WDR33
TCGA.AA.3930.01A	2	128471125	131995716	183	0.0691	NEUTRAL	NA	25	"AMER3,AMMECR1L,ARHGEF4,CCDC115,CCDC74B,CFC1,CFC1B,FAM168B,GPR148,HS6ST1,IMP4,MZT2B,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PTPN18,RAB6C,SAP130,SMPD4,TUBA3E,UGGT1,WDR33"
TCGA.AA.A02J.01A	2	128481867	207026032	3952	-0.1063	NEUTRAL	NA	316	Too-Many
TCGA.AA.3870	2	128554347	129525398	264	-0.417	NEUTRAL	NA	6	"AMMECR1L,HS6ST1,POLR2D,SAP130,UGGT1,WDR33"
TCGA.AG.3891.01A	2	128615537	130738141	68	0.0091	NEUTRAL	NA	6	"AMMECR1L,HS6ST1,POLR2D,RAB6C,SAP130,UGGT1"
TCGA.AG.3909.01A	2	128699533	130843470	65	0.2324	NEUTRAL	NA	5	"HS6ST1,POTEF,RAB6C,SAP130,UGGT1"
TCGA.AA.A00N.01A	2	128699533	130858265	71	0.2254	NEUTRAL	NA	5	"HS6ST1,POTEF,RAB6C,SAP130,UGGT1"
TCGA.AA.A010.01A	2	128699533	130914787	90	0.0294	NEUTRAL	NA	7	"CCDC74B,HS6ST1,POTEF,RAB6C,SAP130,SMPD4,UGGT1"
TCGA.AG.A00C.01A	2	128699533	133425943	171	0.0591	NEUTRAL	NA	31	"AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CFC1,CFC1B,FAM168B,GPR148,GPR39,HS6ST1,IMP4,LYPD1,MZT2A,MZT2B,PLEKHB2,POTEE,POTEF,POTEI,POTEJ,PTPN18,RAB6C,SAP130,SMPD4,TUBA3D,TUBA3E,UGGT1,WTH3DI,ZNF806"
TCGA.AA.A017.01A	2	128702983	179355338	2253	0.0806	NEUTRAL	NA	197	Too-Many
TCGA.AA.A02F.01A	2	128757860	213921568	4223	0.1865	NEUTRAL	NA	345	Too-Many
TCGA.AG.4009.01A	2	128848885	130897081	54	-0.0397	NEUTRAL	NA	5	"CCDC74B,HS6ST1,POTEF,RAB6C,UGGT1"
TCGA.AA.A00Q.01A	2	128935349	130955831	29	0.1565	NEUTRAL	NA	8	"CCDC74B,HS6ST1,MZT2B,POTEF,RAB6C,SMPD4,TUBA3E,UGGT1"
TCGA.AA.3818	2	129280639	238155736	31551	-0.006	NEUTRAL	NA	512	Too-Many
TCGA.AA.3870	2	129526578	243048759	32853	-0.0209	NEUTRAL	NA	567	Too-Many
TCGA.AA.3844	2	129590825	137204017	2148	-0.1093	NEUTRAL	NA	42	"ACMSD,AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CXCR4,DARS,FAM168B,GPR148,GPR39,IMP4,LCT,LYPD1,MAP3K19,MCM6,MGAT5,MZT2A,MZT2B,NCKAP5,PLEKHB2,POTEE,POTEF,POTEI,POTEJ,PTPN18,R3HDM1,RAB3GAP1,RAB6C,SMPD4,TMEM163,TUBA3D,TUBA3E,UBXN4,WTH3DI,ZNF806,ZRANB3"
TCGA.AA.3941	2	129615245	129887639	101	0.1833	NEUTRAL	NA	0	None
TCGA.AA.3864	2	129647349	129738729	26	-0.2261	NEUTRAL	NA	0	None
TCGA.AA.3864	2	129739812	129887639	64	0.083	NEUTRAL	NA	0	None
TCGA.AA.3864	2	129892185	211871630	22390	-0.0672	NEUTRAL	NA	340	Too-Many
TCGA.AA.3850	2	129893555	132278639	524	0.20065	NEUTRAL	NA	22	"AMER3,ARHGEF4,CCDC115,CCDC74B,CFC1,CFC1B,FAM168B,GPR148,IMP4,MZT2A,MZT2B,PLEKHB2,POTEE,POTEF,POTEI,POTEJ,PTPN18,RAB6C,SMPD4,TUBA3D,TUBA3E,WTH3DI"
TCGA.AA.3941	2	129899375	131913893	480	0.2291	NEUTRAL	NA	18	"AMER3,ARHGEF4,CCDC115,CCDC74B,CFC1,CFC1B,FAM168B,GPR148,IMP4,MZT2B,PLEKHB2,POTEF,POTEI,POTEJ,PTPN18,RAB6C,SMPD4,TUBA3E"
TCGA.AG.3583	2	130199224	182504933	14552	0.0026	NEUTRAL	NA	202	Too-Many
TCGA.AG.3727	2	130477703	206234848	20632	-0.0173	NEUTRAL	NA	306	Too-Many
TCGA.NH.A6GC	2	130559028	165095188	9372	0.3297	NEUTRAL	NA	107	Too-Many
TCGA.NH.A8F7	2	130559028	243048759	32336	0.259	NEUTRAL	NA	567	Too-Many
TCGA.CK.4952.01A	2	130588952	179075277	2408	-0.1576	NEUTRAL	NA	190	Too-Many
TCGA.AG.A01W.01A	2	130628274	130813116	20	0.073	NEUTRAL	NA	1	RAB6C
TCGA.AG.3906.01A	2	130831781	130897401	12	-0.3196	NEUTRAL	NA	2	"CCDC74B,POTEF"
TCGA.AG.3891.01A	2	130831781	130918701	23	-0.4711	NEUTRAL	NA	3	"CCDC74B,POTEF,SMPD4"
TCGA.CK.5914.01A	2	130872482	131369072	62	-0.2053	NEUTRAL	NA	11	"CCDC115,CCDC74B,CFC1,CFC1B,IMP4,MZT2B,POTEF,POTEI,PTPN18,SMPD4,TUBA3E"
TCGA.AG.4009.01A	2	130897401	132905656	100	-0.5109	NEUTRAL	NA	23	"AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CFC1,CFC1B,FAM168B,GPR148,IMP4,MZT2A,MZT2B,PLEKHB2,POTEE,POTEI,POTEJ,PTPN18,SMPD4,TUBA3D,TUBA3E,WTH3DI"
TCGA.AG.3906.01A	2	130898678	130921895	13	0.0546	NEUTRAL	NA	2	"CCDC74B,SMPD4"
TCGA.AG.3611.01A	2	130913570	130921895	3	0.2949	NEUTRAL	NA	1	SMPD4
TCGA.AA.A00L.01A	2	130914106	130955831	11	0.1661	NEUTRAL	NA	3	"MZT2B,SMPD4,TUBA3E"
TCGA.AG.3891.01A	2	130921895	131096652	13	0.0852	NEUTRAL	NA	4	"CCDC115,MZT2B,SMPD4,TUBA3E"
TCGA.AG.3611.01A	2	130925004	130948014	6	-0.3818	NEUTRAL	NA	2	"MZT2B,SMPD4"
TCGA.AA.A01Q.01A	2	130948014	131785489	34	0.0604	NEUTRAL	NA	12	"AMER3,ARHGEF4,CCDC115,CFC1,CFC1B,GPR148,IMP4,MZT2B,POTEI,POTEJ,PTPN18,TUBA3E"
TCGA.AG.3611.01A	2	130949405	130955831	4	0.0729	NEUTRAL	NA	1	TUBA3E
TCGA.AA.3693	2	130998863	131039138	8	-0.399	NEUTRAL	NA	0	None
TCGA.AF.2693	2	130998863	243048759	32350	0	NEUTRAL	NA	561	Too-Many
TCGA.AA.3693	2	131042432	131629364	48	-0.0173	NEUTRAL	NA	9	"AMER3,CCDC115,CFC1,CFC1B,GPR148,IMP4,POTEI,POTEJ,PTPN18"
TCGA.AA.A00Q.01A	2	131096652	131486673	16	-0.4725	NEUTRAL	NA	8	"CCDC115,CFC1,CFC1B,GPR148,IMP4,POTEI,POTEJ,PTPN18"
TCGA.AG.3906.01A	2	131096652	135988035	189	-0.0181	NEUTRAL	NA	30	"ACMSD,AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCNT2,CFC1,CFC1B,FAM168B,GPR148,GPR39,IMP4,LYPD1,MAP3K19,MGAT5,MZT2A,NCKAP5,PLEKHB2,POTEE,POTEI,POTEJ,PTPN18,RAB3GAP1,TMEM163,TUBA3D,WTH3DI,ZNF806,ZRANB3"
TCGA.AA.A00L.01A	2	131096652	139428441	239	-0.4484	NEUTRAL	NA	40	"ACMSD,AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCNT2,CFC1,CFC1B,CXCR4,DARS,FAM168B,GPR148,GPR39,HNMT,IMP4,LCT,LYPD1,MAP3K19,MCM6,MGAT5,MZT2A,NCKAP5,NXPH2,PLEKHB2,POTEE,POTEI,POTEJ,PTPN18,R3HDM1,RAB3GAP1,SPOPL,THSD7B,TMEM163,TUBA3D,UBXN4,WTH3DI,ZNF806,ZRANB3"
TCGA.AG.3611.01A	2	131096652	144525571	338	-0.2178	NEUTRAL	NA	43	"ACMSD,AMER3,ARHGAP15,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCNT2,CFC1,CFC1B,CXCR4,DARS,FAM168B,GPR148,GPR39,HNMT,IMP4,KYNU,LCT,LRP1B,LYPD1,MAP3K19,MCM6,MGAT5,MZT2A,NCKAP5,NXPH2,PLEKHB2,POTEE,POTEI,POTEJ,PTPN18,R3HDM1,RAB3GAP1,SPOPL,THSD7B,TMEM163,TUBA3D,UBXN4,WTH3DI,ZNF806,ZRANB3"
TCGA.AG.3891.01A	2	131097145	170550708	1682	-0.197	NEUTRAL	NA	127	Too-Many
TCGA.AA.A010.01A	2	131102920	131132150	14	-0.2344	NEUTRAL	NA	2	"IMP4,PTPN18"
TCGA.AG.A008.01A	2	131221329	170557495	1660	0.0738	NEUTRAL	NA	126	Too-Many
TCGA.AG.A014.01A	2	131258088	138727660	295	-0.0988	NEUTRAL	NA	35	"ACMSD,AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC74A,CCNT2,CFC1,CFC1B,CXCR4,DARS,FAM168B,GPR148,GPR39,HNMT,LCT,LYPD1,MAP3K19,MCM6,MGAT5,MZT2A,NCKAP5,PLEKHB2,POTEE,POTEI,POTEJ,R3HDM1,RAB3GAP1,THSD7B,TMEM163,TUBA3D,UBXN4,WTH3DI,ZNF806,ZRANB3"
TCGA.AG.3909.01A	2	131369072	132021509	41	-0.0512	NEUTRAL	NA	7	"AMER3,ARHGEF4,FAM168B,GPR148,PLEKHB2,POTEE,POTEJ"
TCGA.CK.5914.01A	2	131388931	133430774	75	0.1822	NEUTRAL	NA	17	"AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC74A,FAM168B,GPR148,GPR39,LYPD1,MZT2A,NCKAP5,PLEKHB2,POTEE,POTEJ,TUBA3D,WTH3DI,ZNF806"
TCGA.DM.A28M.01A	2	131403654	152266898	584	-0.0093	NEUTRAL	NA	52	"ACMSD,ACVR2A,AMER3,ARHGAP15,ARHGEF4,C2orf27A,C2orf27B,CCDC74A,CCNT2,CXCR4,DARS,EPC2,FAM168B,GPR148,GPR39,GTDC1,HNMT,KIF5C,KYNU,LCT,LRP1B,LYPD1,LYPD6,LYPD6B,MAP3K19,MBD5,MCM6,MGAT5,MMADHC,MZT2A,NCKAP5,NMI,NXPH2,ORC4,PLEKHB2,POTEE,POTEJ,R3HDM1,RAB3GAP1,RBM43,RIF1,RND3,SPOPL,THSD7B,TMEM163,TNFAIP6,TUBA3D,UBXN4,WTH3DI,ZEB2,ZNF806,ZRANB3"
TCGA.AG.A01W.01A	2	131519362	132001975	32	0.3143	NEUTRAL	NA	5	"AMER3,ARHGEF4,FAM168B,PLEKHB2,POTEE"
TCGA.AA.A00Q.01A	2	131519614	132290790	32	0.1663	NEUTRAL	NA	9	"AMER3,ARHGEF4,CCDC74A,FAM168B,MZT2A,PLEKHB2,POTEE,TUBA3D,WTH3DI"
TCGA.AA.3693	2	131643823	237429588	30574	-0.0661	NEUTRAL	NA	495	Too-Many
TCGA.AA.A02K.01A	2	131800994	160993898	1088	0.0659	NEUTRAL	NA	80	"ACMSD,ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARHGEF4,ARL5A,ARL6IP6,BAZ2B,C2orf27A,C2orf27B,CACNB4,CCDC148,CCDC74A,CCNT2,CD302,CXCR4,CYTIP,DAPL1,DARS,EPC2,ERMN,FAM168B,FMNL2,GALNT13,GALNT5,GPD2,GPR39,GTDC1,HNMT,ITGB6,KCNJ3,KIF5C,KYNU,LCT,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD1,LYPD6,LYPD6B,MAP3K19,MARCH7,MBD5,MCM6,MGAT5,MMADHC,MZT2A,NCKAP5,NEB,NMI,NR4A2,NXPH2,ORC4,PKP4,PLA2R1,PLEKHB2,POTEE,PRPF40A,R3HDM1,RAB3GAP1,RBM43,RIF1,RND3,RPRM,SPOPL,STAM2,TANC1,THSD7B,TMEM163,TNFAIP6,TUBA3D,UBXN4,UPP2,WDSUB1,WTH3DI,ZEB2,ZNF806,ZRANB3"
TCGA.AA.A01Q.01A	2	131801820	139326455	197	0.0882	NEUTRAL	NA	30	"ACMSD,ARHGEF4,C2orf27A,C2orf27B,CCDC74A,CCNT2,CXCR4,DARS,FAM168B,GPR39,HNMT,LCT,LYPD1,MAP3K19,MCM6,MGAT5,MZT2A,NCKAP5,PLEKHB2,POTEE,R3HDM1,RAB3GAP1,SPOPL,THSD7B,TMEM163,TUBA3D,UBXN4,WTH3DI,ZNF806,ZRANB3"
TCGA.AA.A010.01A	2	131878434	132120532	16	0.007	NEUTRAL	NA	3	"PLEKHB2,POTEE,WTH3DI"
TCGA.AA.3941	2	131940490	134729620	857	-0.0698	NEUTRAL	NA	11	"C2orf27A,C2orf27B,CCDC74A,GPR39,LYPD1,MZT2A,NCKAP5,POTEE,TUBA3D,WTH3DI,ZNF806"
TCGA.AA.3930.01A	2	132021509	132285495	12	0.2271	NEUTRAL	NA	5	"CCDC74A,MZT2A,POTEE,TUBA3D,WTH3DI"
TCGA.DC.6157	2	132096438	132357849	49	-0.0246	NEUTRAL	NA	4	"CCDC74A,MZT2A,TUBA3D,WTH3DI"
TCGA.AA.3544	2	132143833	137999978	1886	0.0339	NEUTRAL	NA	23	"ACMSD,C2orf27A,C2orf27B,CCDC74A,CCNT2,CXCR4,DARS,GPR39,LCT,LYPD1,MAP3K19,MCM6,MGAT5,MZT2A,NCKAP5,R3HDM1,RAB3GAP1,THSD7B,TMEM163,TUBA3D,UBXN4,ZNF806,ZRANB3"
TCGA.AA.A010.01A	2	132249402	135988035	127	0.1983	NEUTRAL	NA	15	"ACMSD,C2orf27A,C2orf27B,CCDC74A,CCNT2,GPR39,LYPD1,MAP3K19,MGAT5,MZT2A,NCKAP5,RAB3GAP1,TMEM163,ZNF806,ZRANB3"
TCGA.AA.3930.01A	2	132287146	159499011	904	-0.0684	NEUTRAL	NA	63	"ACMSD,ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,C2orf27A,C2orf27B,CACNB4,CCDC148,CCDC74A,CCNT2,CXCR4,CYTIP,DARS,EPC2,ERMN,FMNL2,GALNT13,GALNT5,GPD2,GPR39,GTDC1,HNMT,KCNJ3,KIF5C,KYNU,LCT,LOC100144595,LRP1B,LYPD1,LYPD6,LYPD6B,MAP3K19,MBD5,MCM6,MGAT5,MMADHC,NCKAP5,NEB,NMI,NR4A2,NXPH2,ORC4,PKP4,PRPF40A,R3HDM1,RAB3GAP1,RBM43,RIF1,RND3,RPRM,SPOPL,STAM2,THSD7B,TMEM163,TNFAIP6,UBXN4,UPP2,ZEB2,ZNF806,ZRANB3"
TCGA.AA.3850	2	132312324	135111438	985	-0.15905	NEUTRAL	NA	7	"C2orf27A,C2orf27B,GPR39,LYPD1,MGAT5,NCKAP5,ZNF806"
TCGA.DC.6157	2	132385321	243048759	31873	0.1587	NEUTRAL	NA	544	Too-Many
TCGA.AA.A00Q.01A	2	132509058	135887525	70	-0.4007	NEUTRAL	NA	12	"ACMSD,C2orf27A,C2orf27B,CCNT2,GPR39,LYPD1,MAP3K19,MGAT5,NCKAP5,RAB3GAP1,TMEM163,ZNF806"
TCGA.AA.A00F.01A	2	132558386	135309564	28	-0.2679	NEUTRAL	NA	7	"C2orf27B,GPR39,LYPD1,MGAT5,NCKAP5,TMEM163,ZNF806"
TCGA.AF.2691	2	132595262	243048759	32142	0.0126	NEUTRAL	NA	542	Too-Many
TCGA.AG.4009.01A	2	132911094	135696531	63	0.0297	NEUTRAL	NA	8	"ACMSD,CCNT2,GPR39,LYPD1,MGAT5,NCKAP5,TMEM163,ZNF806"
TCGA.DM.A1D7	2	133114535	237323400	30355	-0.0438	NEUTRAL	NA	484	Too-Many
TCGA.AA.3861.01A	2	133174607	135892781	96	-0.39	NEUTRAL	NA	9	"ACMSD,CCNT2,GPR39,LYPD1,MAP3K19,MGAT5,NCKAP5,RAB3GAP1,TMEM163"
TCGA.AA.3862.01A	2	133174607	152342225	555	0.0326	NEUTRAL	NA	39	"ACMSD,ACVR2A,ARHGAP15,CCNT2,CXCR4,DARS,EPC2,GPR39,GTDC1,HNMT,KIF5C,KYNU,LCT,LRP1B,LYPD1,LYPD6,LYPD6B,MAP3K19,MBD5,MCM6,MGAT5,MMADHC,NCKAP5,NEB,NMI,NXPH2,ORC4,R3HDM1,RAB3GAP1,RBM43,RIF1,RND3,SPOPL,THSD7B,TMEM163,TNFAIP6,UBXN4,ZEB2,ZRANB3"
TCGA.DM.A28F	2	133263469	133443503	91	-0.0026	NEUTRAL	NA	3	"GPR39,LYPD1,NCKAP5"
TCGA.DM.A28F	2	133444489	142226297	2882	0.3591	NEUTRAL	NA	19	"ACMSD,CCNT2,CXCR4,DARS,HNMT,LCT,LRP1B,MAP3K19,MCM6,MGAT5,NCKAP5,NXPH2,R3HDM1,RAB3GAP1,SPOPL,THSD7B,TMEM163,UBXN4,ZRANB3"
TCGA.AG.A00C.01A	2	133483158	135625123	46	-0.2544	NEUTRAL	NA	4	"ACMSD,MGAT5,NCKAP5,TMEM163"
TCGA.A6.2686	2	133494688	193456256	16919	-0.0476	NEUTRAL	NA	216	Too-Many
TCGA.A6.6782	2	133651774	243048759	31689	0	NEUTRAL	NA	539	Too-Many
TCGA.AA.3529	2	133806507	134202405	136	-0.3805	NEUTRAL	NA	1	NCKAP5
TCGA.EI.6508	2	134003941	138743165	1590	-0.0344	NEUTRAL	NA	16	"ACMSD,CCNT2,CXCR4,DARS,HNMT,LCT,MAP3K19,MCM6,MGAT5,NCKAP5,R3HDM1,RAB3GAP1,THSD7B,TMEM163,UBXN4,ZRANB3"
TCGA.AA.3529	2	134203239	187377480	15112	-0.0195	NEUTRAL	NA	186	Too-Many
TCGA.AA.3941	2	134729699	135047918	139	0.3012	NEUTRAL	NA	1	MGAT5
TCGA.AA.3941	2	135088452	137214746	525	0.3316	NEUTRAL	NA	13	"ACMSD,CCNT2,CXCR4,DARS,LCT,MAP3K19,MCM6,MGAT5,R3HDM1,RAB3GAP1,TMEM163,UBXN4,ZRANB3"
TCGA.F5.6814	2	135093152	165429536	8205	-0.3347	NEUTRAL	NA	79	"ACMSD,ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CCNT2,CD302,CXCR4,CYTIP,DAPL1,DARS,DPP4,EPC2,ERMN,FAP,FIGN,FMNL2,GALNT13,GALNT5,GCA,GCG,GPD2,GRB14,GTDC1,HNMT,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,KYNU,LCT,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD6,LYPD6B,MAP3K19,MARCH7,MBD5,MCM6,MGAT5,MMADHC,NEB,NMI,NR4A2,NXPH2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,R3HDM1,RAB3GAP1,RBM43,RBMS1,RIF1,RND3,RPRM,SLC4A10,SPOPL,STAM2,TANC1,TANK,TBR1,THSD7B,TMEM163,TNFAIP6,UBXN4,UPP2,WDSUB1,ZEB2,ZRANB3"
TCGA.AA.3850	2	135117770	136928319	390	0.29005	NEUTRAL	NA	13	"ACMSD,CCNT2,CXCR4,DARS,LCT,MAP3K19,MCM6,MGAT5,R3HDM1,RAB3GAP1,TMEM163,UBXN4,ZRANB3"
TCGA.AA.A00D.01A	2	135180365	140992313	161	-0.4445	NEUTRAL	NA	18	"ACMSD,CCNT2,CXCR4,DARS,HNMT,LCT,LRP1B,MAP3K19,MCM6,MGAT5,NXPH2,R3HDM1,RAB3GAP1,SPOPL,THSD7B,TMEM163,UBXN4,ZRANB3"
TCGA.AG.3909.01A	2	135470718	135738356	23	-0.3225	NEUTRAL	NA	4	"ACMSD,CCNT2,MAP3K19,TMEM163"
TCGA.CK.5914.01A	2	135470718	135893232	51	-0.0623	NEUTRAL	NA	5	"ACMSD,CCNT2,MAP3K19,RAB3GAP1,TMEM163"
TCGA.AA.A00F.01A	2	135470718	136873167	127	0.017	NEUTRAL	NA	12	"ACMSD,CCNT2,CXCR4,DARS,LCT,MAP3K19,MCM6,R3HDM1,RAB3GAP1,TMEM163,UBXN4,ZRANB3"
TCGA.AG.A00C.01A	2	135628485	135883698	37	0.1718	NEUTRAL	NA	4	"ACMSD,CCNT2,MAP3K19,RAB3GAP1"
TCGA.AG.4009.01A	2	135700117	135884102	30	-0.3807	NEUTRAL	NA	3	"CCNT2,MAP3K19,RAB3GAP1"
TCGA.AG.3909.01A	2	135740721	135762957	9	0.2593	NEUTRAL	NA	1	MAP3K19
TCGA.AG.3909.01A	2	135779243	135890412	16	-0.2469	NEUTRAL	NA	2	"MAP3K19,RAB3GAP1"
TCGA.AG.A00C.01A	2	135884102	135988035	21	-0.2249	NEUTRAL	NA	2	"RAB3GAP1,ZRANB3"
TCGA.AG.4009.01A	2	135887525	152727285	581	-0.0236	NEUTRAL	NA	33	"ACVR2A,ARHGAP15,ARL5A,CACNB4,CXCR4,DARS,EPC2,GTDC1,HNMT,KIF5C,KYNU,LCT,LRP1B,LYPD6,LYPD6B,MBD5,MCM6,MMADHC,NEB,NMI,NXPH2,ORC4,R3HDM1,RAB3GAP1,RBM43,RIF1,RND3,SPOPL,THSD7B,TNFAIP6,UBXN4,ZEB2,ZRANB3"
TCGA.AA.A00Q.01A	2	135888072	136396469	20	0.0369	NEUTRAL	NA	3	"R3HDM1,RAB3GAP1,ZRANB3"
TCGA.AG.3909.01A	2	135891403	136437756	44	0.2783	NEUTRAL	NA	3	"R3HDM1,RAB3GAP1,ZRANB3"
TCGA.AA.3861.01A	2	135893232	152348565	463	0.1403	NEUTRAL	NA	31	"ACVR2A,ARHGAP15,CXCR4,DARS,EPC2,GTDC1,HNMT,KIF5C,KYNU,LCT,LRP1B,LYPD6,LYPD6B,MBD5,MCM6,MMADHC,NEB,NMI,NXPH2,ORC4,R3HDM1,RAB3GAP1,RBM43,RIF1,RND3,SPOPL,THSD7B,TNFAIP6,UBXN4,ZEB2,ZRANB3"
TCGA.AG.A00C.01A	2	136023065	136148295	10	0.1115	NEUTRAL	NA	1	ZRANB3
TCGA.AA.A010.01A	2	136071032	136545915	45	0.3358	NEUTRAL	NA	4	"LCT,R3HDM1,UBXN4,ZRANB3"
TCGA.AG.3906.01A	2	136071032	155265447	637	-0.0702	NEUTRAL	NA	38	"ACVR2A,ARHGAP15,ARL5A,ARL6IP6,CACNB4,CXCR4,DARS,EPC2,FMNL2,GALNT13,GTDC1,HNMT,KIF5C,KYNU,LCT,LRP1B,LYPD6,LYPD6B,MBD5,MCM6,MMADHC,NEB,NMI,NXPH2,ORC4,PRPF40A,R3HDM1,RBM43,RIF1,RND3,RPRM,SPOPL,STAM2,THSD7B,TNFAIP6,UBXN4,ZEB2,ZRANB3"
TCGA.AZ.4684.01A	2	136396128	138738799	115	0.125	NEUTRAL	NA	8	"CXCR4,DARS,HNMT,LCT,MCM6,R3HDM1,THSD7B,UBXN4"
TCGA.AA.A00Q.01A	2	136399059	149270408	254	-0.4753	NEUTRAL	NA	18	"ACVR2A,ARHGAP15,CXCR4,DARS,GTDC1,HNMT,KYNU,LCT,LRP1B,MBD5,MCM6,NXPH2,ORC4,R3HDM1,SPOPL,THSD7B,UBXN4,ZEB2"
TCGA.AA.A00N.01A	2	136422920	136437756	3	0.3417	NEUTRAL	NA	1	R3HDM1
TCGA.CK.5914.01A	2	136466984	136540280	19	-0.2727	NEUTRAL	NA	2	"R3HDM1,UBXN4"
TCGA.AG.A00C.01A	2	136481470	136519343	6	-0.0296	NEUTRAL	NA	2	"R3HDM1,UBXN4"
TCGA.AG.3909.01A	2	136519343	136540280	8	0.2766	NEUTRAL	NA	1	UBXN4
TCGA.AA.A00N.01A	2	136528092	136540280	6	-0.1184	NEUTRAL	NA	1	UBXN4
TCGA.AG.3909.01A	2	136579543	150443518	303	0.2678	NEUTRAL	NA	21	"ACVR2A,ARHGAP15,CXCR4,DARS,EPC2,GTDC1,HNMT,KIF5C,KYNU,LCT,LRP1B,LYPD6,LYPD6B,MBD5,MCM6,MMADHC,NXPH2,ORC4,SPOPL,THSD7B,ZEB2"
TCGA.A6.3808.01A	2	136594078	136691423	29	-0.0844	NEUTRAL	NA	3	"DARS,LCT,MCM6"
TCGA.AA.A010.01A	2	136598358	139428441	79	0.1829	NEUTRAL	NA	7	"CXCR4,DARS,HNMT,MCM6,NXPH2,SPOPL,THSD7B"
TCGA.CK.5914.01A	2	136624082	136630230	4	-0.4395	NEUTRAL	NA	1	MCM6
TCGA.AG.A00C.01A	2	136624082	150443518	286	-0.2408	NEUTRAL	NA	20	"ACVR2A,ARHGAP15,CXCR4,DARS,EPC2,GTDC1,HNMT,KIF5C,KYNU,LRP1B,LYPD6,LYPD6B,MBD5,MCM6,MMADHC,NXPH2,ORC4,SPOPL,THSD7B,ZEB2"
TCGA.AA.3850	2	136929882	137037118	39	-0.17895	NEUTRAL	NA	0	None
TCGA.AA.3850	2	137037385	137155849	62	0.35085	NEUTRAL	NA	0	None
TCGA.AA.3844	2	137213297	151742521	4081	-0.4402	NEUTRAL	NA	18	"ACVR2A,ARHGAP15,EPC2,GTDC1,HNMT,KIF5C,KYNU,LRP1B,LYPD6,LYPD6B,MBD5,MMADHC,NXPH2,ORC4,RND3,SPOPL,THSD7B,ZEB2"
TCGA.AA.3982	2	137283934	140657910	1100	-0.3782	NEUTRAL	NA	4	"HNMT,NXPH2,SPOPL,THSD7B"
TCGA.AA.3811	2	137393952	141310720	1257	-0.2584	NEUTRAL	NA	5	"HNMT,LRP1B,NXPH2,SPOPL,THSD7B"
TCGA.AG.A00Y.01A	2	137814043	149240698	203	-0.3496	NEUTRAL	NA	12	"ACVR2A,ARHGAP15,GTDC1,HNMT,KYNU,LRP1B,MBD5,NXPH2,ORC4,SPOPL,THSD7B,ZEB2"
TCGA.AA.A00F.01A	2	137814043	150443518	200	-0.2768	NEUTRAL	NA	17	"ACVR2A,ARHGAP15,EPC2,GTDC1,HNMT,KIF5C,KYNU,LRP1B,LYPD6,LYPD6B,MBD5,MMADHC,NXPH2,ORC4,SPOPL,THSD7B,ZEB2"
TCGA.A6.A566	2	138283482	164078474	6892	-0.354	NEUTRAL	NA	64	"ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,CYTIP,DAPL1,DPP4,EPC2,ERMN,FAP,FMNL2,GALNT13,GALNT5,GCA,GCG,GPD2,GTDC1,HNMT,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,KYNU,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NR4A2,NXPH2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,RBM43,RBMS1,RIF1,RND3,RPRM,SLC4A10,SPOPL,STAM2,TANC1,TANK,TBR1,THSD7B,TNFAIP6,UPP2,WDSUB1,ZEB2"
TCGA.AG.A01J.01A	2	138320761	170175235	1315	0.1889	NEUTRAL	NA	86	"ABCB11,ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,B3GALT1,BAZ2B,CACNB4,CCDC148,CD302,CERS6,COBLL1,CSRNP3,CYTIP,DAPL1,DHRS9,DPP4,EPC2,ERMN,FAP,FIGN,FMNL2,G6PC2,GALNT13,GALNT3,GALNT5,GCA,GCG,GPD2,GRB14,GTDC1,HNMT,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,KYNU,LOC100144595,LRP1B,LRP2,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NOSTRIN,NR4A2,NXPH2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,RBM43,RBMS1,RIF1,RND3,RPRM,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,SPC25,SPOPL,STAM2,STK39,TANC1,TANK,TBR1,THSD7B,TNFAIP6,TTC21B,UPP2,WDSUB1,XIRP2,ZEB2"
TCGA.G4.6295	2	138453807	226277245	24932	0.3202	NEUTRAL	NA	389	Too-Many
TCGA.AA.3544	2	138644648	147455148	2470	-0.0068	NEUTRAL	NA	8	"ARHGAP15,GTDC1,HNMT,KYNU,LRP1B,NXPH2,SPOPL,ZEB2"
TCGA.AG.A014.01A	2	138738799	149221281	173	-0.4607	NEUTRAL	NA	11	"ACVR2A,ARHGAP15,GTDC1,HNMT,KYNU,LRP1B,MBD5,NXPH2,ORC4,SPOPL,ZEB2"
TCGA.CA.5797	2	138858167	243048759	30034	-0.4156	NEUTRAL	NA	523	Too-Many
TCGA.DM.A1D9	2	139148166	186618006	13325	0	NEUTRAL	NA	169	Too-Many
TCGA.DM.A1D6	2	139227995	243048759	29974	-0.0552	NEUTRAL	NA	523	Too-Many
TCGA.EI.6508	2	139303547	160666408	5848	0.0049	NEUTRAL	NA	49	"ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,CYTIP,DAPL1,EPC2,ERMN,FMNL2,GALNT13,GALNT5,GPD2,GTDC1,KCNJ3,KIF5C,KYNU,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NR4A2,NXPH2,ORC4,PKP4,PRPF40A,RBM43,RIF1,RND3,RPRM,SPOPL,STAM2,TANC1,TNFAIP6,UPP2,WDSUB1,ZEB2"
TCGA.AA.A01Q.01A	2	139428441	141130550	24	-0.4363	NEUTRAL	NA	2	"LRP1B,NXPH2"
TCGA.G4.6309	2	139704409	243048759	29791	0.0006	NEUTRAL	NA	521	Too-Many
TCGA.AA.3867	2	139753274	141215616	461	-0.2166	NEUTRAL	NA	1	LRP1B
TCGA.F5.6811.01A	2	140744229	162944568	952	0.0188	NEUTRAL	NA	55	"ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,CYTIP,DAPL1,DPP4,EPC2,ERMN,FMNL2,GALNT13,GALNT5,GPD2,GTDC1,ITGB6,KCNJ3,KIF5C,KYNU,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NR4A2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,RBM43,RBMS1,RIF1,RND3,RPRM,SLC4A10,STAM2,TANC1,TANK,TBR1,TNFAIP6,UPP2,WDSUB1,ZEB2"
TCGA.AA.A01Q.01A	2	141135707	167297936	751	-0.0304	NEUTRAL	NA	72	"ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,COBLL1,CSRNP3,CYTIP,DAPL1,DPP4,EPC2,ERMN,FAP,FIGN,FMNL2,GALNT13,GALNT3,GALNT5,GCA,GCG,GPD2,GRB14,GTDC1,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,KYNU,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NR4A2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,RBM43,RBMS1,RIF1,RND3,RPRM,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,STAM2,TANC1,TANK,TBR1,TNFAIP6,TTC21B,UPP2,WDSUB1,ZEB2"
TCGA.AA.3867	2	141270269	148332738	1895	-0.1437	NEUTRAL	NA	5	"ARHGAP15,GTDC1,KYNU,LRP1B,ZEB2"
TCGA.AA.A010.01A	2	141274431	145187307	99	-0.3142	NEUTRAL	NA	5	"ARHGAP15,GTDC1,KYNU,LRP1B,ZEB2"
TCGA.AA.3811	2	141313350	141874409	190	-0.348	NEUTRAL	NA	1	LRP1B
TCGA.AF.A56L	2	141840540	142181581	108	-0.2837	NEUTRAL	NA	1	LRP1B
TCGA.AA.3679	2	141892884	142187539	90	-0.0265	NEUTRAL	NA	1	LRP1B
TCGA.F4.6460	2	142129522	142492301	170	-0.3334	NEUTRAL	NA	1	LRP1B
TCGA.AA.3811	2	142147021	147992666	1496	-0.2858	NEUTRAL	NA	5	"ARHGAP15,GTDC1,KYNU,LRP1B,ZEB2"
TCGA.G4.6626	2	142167236	152341117	2712	-0.0633	NEUTRAL	NA	18	"ACVR2A,ARHGAP15,EPC2,GTDC1,KIF5C,KYNU,LRP1B,LYPD6,LYPD6B,MBD5,MMADHC,NMI,ORC4,RBM43,RIF1,RND3,TNFAIP6,ZEB2"
TCGA.AF.A56L	2	142182110	243048759	29024	0.0192	NEUTRAL	NA	521	Too-Many
TCGA.D5.6531	2	142196554	243048759	29068	0.0527	NEUTRAL	NA	521	Too-Many
TCGA.AA.3679	2	142217479	142350129	69	-0.0235	NEUTRAL	NA	1	LRP1B
TCGA.DM.A28F	2	142226831	142307200	55	-0.1412	NEUTRAL	NA	1	LRP1B
TCGA.AG.3896	2	142274719	142500679	114	-0.0192	NEUTRAL	NA	1	LRP1B
TCGA.DM.A28F	2	142309113	164837632	5877	0.3563	NEUTRAL	NA	61	"ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,CYTIP,DAPL1,DPP4,EPC2,ERMN,FAP,FIGN,FMNL2,GALNT13,GALNT5,GCA,GCG,GPD2,GTDC1,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,KYNU,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NR4A2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,RBM43,RBMS1,RIF1,RND3,RPRM,SLC4A10,STAM2,TANC1,TANK,TBR1,TNFAIP6,UPP2,WDSUB1,ZEB2"
TCGA.AA.3679	2	142362443	243048759	29006	0.3702	NEUTRAL	NA	521	Too-Many
TCGA.F4.6460	2	142495018	165460928	5939	0.1179	NEUTRAL	NA	62	"ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,CYTIP,DAPL1,DPP4,EPC2,ERMN,FAP,FIGN,FMNL2,GALNT13,GALNT5,GCA,GCG,GPD2,GRB14,GTDC1,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,KYNU,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NR4A2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,RBM43,RBMS1,RIF1,RND3,RPRM,SLC4A10,STAM2,TANC1,TANK,TBR1,TNFAIP6,UPP2,WDSUB1,ZEB2"
TCGA.A6.3810.01A	2	142567801	176944788	1785	0.2795	NEUTRAL	NA	125	Too-Many
TCGA.5M.AAT5	2	142606735	235706614	26554	0.073	NEUTRAL	NA	459	Too-Many
TCGA.AA.3543	2	143513607	238542703	27300	-0.0381	NEUTRAL	NA	470	Too-Many
TCGA.AG.3611.01A	2	144899399	169625973	669	-0.2109	NEUTRAL	NA	73	"ACVR1,ACVR1C,ACVR2A,ARL5A,ARL6IP6,B3GALT1,BAZ2B,CACNB4,CCDC148,CD302,CERS6,COBLL1,CSRNP3,CYTIP,DAPL1,DPP4,EPC2,ERMN,FAP,FIGN,FMNL2,GALNT13,GALNT3,GALNT5,GCA,GCG,GPD2,GRB14,GTDC1,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,LOC100144595,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NR4A2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,RBM43,RBMS1,RIF1,RND3,RPRM,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,STAM2,STK39,TANC1,TANK,TBR1,TNFAIP6,TTC21B,UPP2,WDSUB1,XIRP2,ZEB2"
TCGA.AA.3939.01A	2	145188055	148700962	18	-0.5068	NEUTRAL	NA	3	"ACVR2A,ORC4,ZEB2"
TCGA.AA.3681	2	145612272	220450466	20661	-0.025	NEUTRAL	NA	362	Too-Many
TCGA.DM.A1DB	2	145709718	243048759	28085	0.0051	NEUTRAL	NA	516	Too-Many
TCGA.AA.3811	2	148104716	153760604	1633	-1.00E-04	NEUTRAL	NA	20	"ACVR2A,ARL5A,ARL6IP6,CACNB4,EPC2,FMNL2,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,NEB,NMI,ORC4,PRPF40A,RBM43,RIF1,RND3,STAM2,TNFAIP6"
TCGA.AZ.4308	2	148154187	243048759	27553	0.0061	NEUTRAL	NA	516	Too-Many
TCGA.AA.3867	2	148337554	155606964	2074	0.0663	NEUTRAL	NA	24	"ACVR2A,ARL5A,ARL6IP6,CACNB4,EPC2,FMNL2,GALNT13,KCNJ3,KIF5C,LOC100144595,LYPD6,LYPD6B,MBD5,MMADHC,NEB,NMI,ORC4,PRPF40A,RBM43,RIF1,RND3,RPRM,STAM2,TNFAIP6"
TCGA.AA.A010.01A	2	148653829	149240698	27	-0.3471	NEUTRAL	NA	3	"ACVR2A,MBD5,ORC4"
TCGA.AA.3850	2	148692775	150865869	509	-0.11995	NEUTRAL	NA	7	"EPC2,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,ORC4"
TCGA.AA.3941	2	148709652	153843127	1469	0.0247	NEUTRAL	NA	19	"ARL5A,ARL6IP6,CACNB4,EPC2,FMNL2,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,NEB,NMI,ORC4,PRPF40A,RBM43,RIF1,RND3,STAM2,TNFAIP6"
TCGA.AA.3982	2	148775577	153830934	1460	-0.0506	NEUTRAL	NA	19	"ARL5A,ARL6IP6,CACNB4,EPC2,FMNL2,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,NEB,NMI,ORC4,PRPF40A,RBM43,RIF1,RND3,STAM2,TNFAIP6"
TCGA.EI.6882	2	149167660	243048759	27274	-0.0024	NEUTRAL	NA	514	Too-Many
TCGA.A6.3808.01A	2	149221281	170343514	1183	0.2161	NEUTRAL	NA	76	"ABCB11,ACVR1,ACVR1C,ARL5A,ARL6IP6,B3GALT1,BAZ2B,BBS5,CACNB4,CCDC148,CD302,CERS6,COBLL1,CSRNP3,CYTIP,DAPL1,DHRS9,DPP4,EPC2,ERMN,FAP,FIGN,FMNL2,G6PC2,GALNT13,GALNT3,GALNT5,GCA,GCG,GPD2,GRB14,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,LOC100144595,LRP2,LY75,LY75-CD302,LYPD6,LYPD6B,MARCH7,MBD5,MMADHC,NEB,NMI,NOSTRIN,NR4A2,PKP4,PLA2R1,PRPF40A,PSMD14,RBM43,RBMS1,RIF1,RND3,RPRM,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,SPC25,STAM2,STK39,TANC1,TANK,TBR1,TNFAIP6,TTC21B,UPP2,WDSUB1,XIRP2"
TCGA.AG.A014.01A	2	149225863	217559163	3937	-0.1529	NEUTRAL	NA	305	Too-Many
TCGA.AA.3939.01A	2	149240698	178769770	1774	-0.2238	NEUTRAL	NA	135	Too-Many
TCGA.AA.A010.01A	2	149243289	152324929	121	0.3345	NEUTRAL	NA	11	"EPC2,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,NMI,RBM43,RIF1,RND3,TNFAIP6"
TCGA.AG.A00Y.01A	2	149243289	182394221	2062	-0.011	NEUTRAL	NA	148	Too-Many
TCGA.AA.A01C.01A	2	149246904	152487575	192	0.0442	NEUTRAL	NA	12	"EPC2,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,NEB,NMI,RBM43,RIF1,RND3,TNFAIP6"
TCGA.AA.A00D.01A	2	149270408	150071011	6	0.1446	NEUTRAL	NA	4	"EPC2,KIF5C,LYPD6B,MBD5"
TCGA.AA.A00L.01A	2	149270408	150071011	12	0.1046	NEUTRAL	NA	4	"EPC2,KIF5C,LYPD6B,MBD5"
TCGA.AG.A01W.01A	2	149355761	149725464	26	-0.104	NEUTRAL	NA	2	"EPC2,KIF5C"
TCGA.AA.3509.01A	2	149522507	152128088	68	0.1084	NEUTRAL	NA	8	"EPC2,KIF5C,LYPD6,LYPD6B,MMADHC,NMI,RBM43,RND3"
TCGA.AZ.4684.01A	2	149522507	152128088	68	0.1208	NEUTRAL	NA	8	"EPC2,KIF5C,LYPD6,LYPD6B,MMADHC,NMI,RBM43,RND3"
TCGA.AA.A00L.01A	2	150294195	152342225	67	-0.4593	NEUTRAL	NA	8	"LYPD6,MMADHC,NEB,NMI,RBM43,RIF1,RND3,TNFAIP6"
TCGA.CK.5914.01A	2	150426441	152316462	58	-0.1861	NEUTRAL	NA	6	"MMADHC,NMI,RBM43,RIF1,RND3,TNFAIP6"
TCGA.AA.3544	2	150519957	154318052	1228	0.099	NEUTRAL	NA	12	"ARL5A,ARL6IP6,CACNB4,FMNL2,NEB,NMI,PRPF40A,RBM43,RIF1,RND3,STAM2,TNFAIP6"
TCGA.CM.6676	2	150760020	243048759	26812	0.061	NEUTRAL	NA	508	Too-Many
TCGA.D5.5538	2	150795387	151854710	347	0.0376	NEUTRAL	NA	1	RND3
TCGA.AA.3850	2	150890494	150902236	5	0.13225	NEUTRAL	NA	0	None
TCGA.AA.3850	2	150911158	152085642	440	-0.21705	NEUTRAL	NA	1	RND3
TCGA.AA.A00F.01A	2	151326454	152118144	9	0.1354	NEUTRAL	NA	2	"RBM43,RND3"
TCGA.AG.A00C.01A	2	151326454	152299994	38	0.2009	NEUTRAL	NA	5	"NMI,RBM43,RIF1,RND3,TNFAIP6"
TCGA.DM.A1HA	2	151446186	243048759	26728	0.0717	NEUTRAL	NA	507	Too-Many
TCGA.AA.3844	2	151753831	153814232	670	-0.0863	NEUTRAL	NA	11	"ARL5A,ARL6IP6,CACNB4,FMNL2,NEB,NMI,PRPF40A,RBM43,RIF1,STAM2,TNFAIP6"
TCGA.AG.A01W.01A	2	151836335	152004760	24	0.0887	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	152038689	152061677	12	0.1108	NEUTRAL	NA	0	None
TCGA.AA.3850	2	152100979	152199663	28	0.16285	NEUTRAL	NA	2	"NMI,RBM43"
TCGA.AA.A00D.01A	2	152107368	153576977	89	-0.2681	NEUTRAL	NA	11	"ARL5A,ARL6IP6,CACNB4,FMNL2,NEB,NMI,PRPF40A,RBM43,RIF1,STAM2,TNFAIP6"
TCGA.AZ.4684.01A	2	152131976	152302918	28	-0.5098	NEUTRAL	NA	3	"NMI,RIF1,TNFAIP6"
TCGA.AA.3509.01A	2	152131976	152318705	36	-0.4815	NEUTRAL	NA	3	"NMI,RIF1,TNFAIP6"
TCGA.AA.A00F.01A	2	152214126	152266898	7	-0.0935	NEUTRAL	NA	2	"RIF1,TNFAIP6"
TCGA.AG.3909.01A	2	152214126	152266898	7	0.3103	NEUTRAL	NA	2	"RIF1,TNFAIP6"
TCGA.AA.A00Q.01A	2	152214126	159028588	150	-0.3215	NEUTRAL	NA	22	"ACVR1,ACVR1C,ARL5A,ARL6IP6,CACNB4,CCDC148,CYTIP,ERMN,FMNL2,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NEB,NR4A2,PRPF40A,RIF1,RPRM,STAM2,TNFAIP6,UPP2"
TCGA.AG.A01W.01A	2	152259032	153244084	91	0.2965	NEUTRAL	NA	6	"ARL5A,CACNB4,FMNL2,NEB,RIF1,STAM2"
TCGA.AA.A00F.01A	2	152267722	152298376	14	0.262	NEUTRAL	NA	1	RIF1
TCGA.AA.A00N.01A	2	152289559	152318705	19	0.211	NEUTRAL	NA	1	RIF1
TCGA.AA.A00F.01A	2	152299717	163150037	356	-0.0678	NEUTRAL	NA	41	"ACVR1,ACVR1C,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,CYTIP,DAPL1,DPP4,ERMN,FAP,FMNL2,GALNT13,GALNT5,GCG,GPD2,IFIH1,ITGB6,KCNJ3,LOC100144595,LY75,LY75-CD302,MARCH7,NEB,NR4A2,PKP4,PLA2R1,PRPF40A,PSMD14,RBMS1,RIF1,RPRM,SLC4A10,STAM2,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.AG.A00C.01A	2	152301805	152663287	151	-0.254	NEUTRAL	NA	3	"ARL5A,NEB,RIF1"
TCGA.DM.A28M.01A	2	152308072	152321751	10	-0.1603	NEUTRAL	NA	1	RIF1
TCGA.AZ.4684.01A	2	152308072	162059288	544	0.222	NEUTRAL	NA	34	"ACVR1,ACVR1C,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,CYTIP,DAPL1,ERMN,FMNL2,GALNT13,GALNT5,GPD2,ITGB6,KCNJ3,LOC100144595,LY75,LY75-CD302,MARCH7,NEB,NR4A2,PKP4,PLA2R1,PRPF40A,RBMS1,RIF1,RPRM,STAM2,TANC1,TANK,UPP2,WDSUB1"
TCGA.AA.3850	2	152310927	152677354	85	0.06065	NEUTRAL	NA	3	"ARL5A,NEB,RIF1"
TCGA.AG.3909.01A	2	152313026	152330436	12	0.0983	NEUTRAL	NA	1	RIF1
TCGA.AA.3509.01A	2	152319431	154800983	234	0.0953	NEUTRAL	NA	10	"ARL5A,ARL6IP6,CACNB4,FMNL2,GALNT13,NEB,PRPF40A,RIF1,RPRM,STAM2"
TCGA.AA.A010.01A	2	152326187	152361940	20	-0.2831	NEUTRAL	NA	2	"NEB,RIF1"
TCGA.G4.6626	2	152348184	153553150	361	-0.4474	NEUTRAL	NA	6	"ARL5A,CACNB4,FMNL2,NEB,PRPF40A,STAM2"
TCGA.DM.A28M.01A	2	152361940	177161525	1578	-0.0022	NEUTRAL	NA	118	Too-Many
TCGA.AA.A010.01A	2	152362630	152411398	38	0.1262	NEUTRAL	NA	1	NEB
TCGA.AA.A00L.01A	2	152380785	152539137	15	0.1368	NEUTRAL	NA	1	NEB
TCGA.AA.A010.01A	2	152417086	152487181	31	-0.2095	NEUTRAL	NA	1	NEB
TCGA.AA.3861.01A	2	152419108	165636113	649	0.0189	NEUTRAL	NA	45	"ACVR1,ACVR1C,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,COBLL1,CYTIP,DAPL1,DPP4,ERMN,FAP,FIGN,FMNL2,GALNT13,GALNT5,GCA,GCG,GPD2,GRB14,IFIH1,ITGB6,KCNH7,KCNJ3,LOC100144595,LY75,LY75-CD302,MARCH7,NEB,NR4A2,PKP4,PLA2R1,PRPF40A,PSMD14,RBMS1,RPRM,SLC4A10,STAM2,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.AA.3862.01A	2	152421975	242841181	6352	0.0876	NEUTRAL	NA	503	Too-Many
TCGA.AA.A010.01A	2	152506668	152518608	9	-0.4994	NEUTRAL	NA	1	NEB
TCGA.AA.A010.01A	2	152520012	152524291	5	-0.1472	NEUTRAL	NA	1	NEB
TCGA.AA.A010.01A	2	152536185	152550828	9	0.1969	NEUTRAL	NA	1	NEB
TCGA.AA.A01C.01A	2	152547192	152573883	10	-0.0273	NEUTRAL	NA	1	NEB
TCGA.AA.A00N.01A	2	152566901	152663287	11	0.2306	NEUTRAL	NA	2	"ARL5A,NEB"
TCGA.AA.A01C.01A	2	152579855	152711691	17	0.2953	NEUTRAL	NA	3	"ARL5A,CACNB4,NEB"
TCGA.AA.A010.01A	2	152581334	152830134	24	-0.2681	NEUTRAL	NA	3	"ARL5A,CACNB4,NEB"
TCGA.AG.3909.01A	2	152589551	153032055	34	-0.1284	NEUTRAL	NA	4	"ARL5A,CACNB4,NEB,STAM2"
TCGA.AG.A00C.01A	2	152668821	153006615	29	0.2992	NEUTRAL	NA	3	"ARL5A,CACNB4,STAM2"
TCGA.AA.3850	2	152690247	152796061	26	-0.35605	NEUTRAL	NA	1	CACNB4
TCGA.AA.A01C.01A	2	152717178	153533881	61	-0.2566	NEUTRAL	NA	4	"CACNB4,FMNL2,PRPF40A,STAM2"
TCGA.CK.5914.01A	2	152725664	152737293	6	-0.4634	NEUTRAL	NA	1	CACNB4
TCGA.AA.A00N.01A	2	152739748	152991984	11	-0.0995	NEUTRAL	NA	2	"CACNB4,STAM2"
TCGA.AA.3850	2	152803128	153578112	267	0.19215	NEUTRAL	NA	5	"ARL6IP6,CACNB4,FMNL2,PRPF40A,STAM2"
TCGA.AG.4009.01A	2	152830134	162251581	368	-0.0108	NEUTRAL	NA	32	"ACVR1,ACVR1C,ARL6IP6,BAZ2B,CACNB4,CCDC148,CD302,CYTIP,DAPL1,ERMN,FMNL2,GALNT13,GALNT5,GPD2,ITGB6,KCNJ3,LOC100144595,LY75,LY75-CD302,MARCH7,NR4A2,PKP4,PLA2R1,PRPF40A,PSMD14,RBMS1,RPRM,STAM2,TANC1,TANK,UPP2,WDSUB1"
TCGA.AA.A010.01A	2	152954809	155566073	86	0.3438	NEUTRAL	NA	9	"ARL6IP6,CACNB4,FMNL2,GALNT13,KCNJ3,LOC100144595,PRPF40A,RPRM,STAM2"
TCGA.AG.A00C.01A	2	153032055	155711190	66	-0.1664	NEUTRAL	NA	8	"ARL6IP6,FMNL2,GALNT13,KCNJ3,LOC100144595,PRPF40A,RPRM,STAM2"
TCGA.AG.3909.01A	2	153192091	153547383	43	0.3597	NEUTRAL	NA	2	"FMNL2,PRPF40A"
TCGA.EI.6885	2	153296093	153522962	89	-0.3847	NEUTRAL	NA	2	"FMNL2,PRPF40A"
TCGA.D5.5538	2	153475555	164330381	2772	0.0082	NEUTRAL	NA	38	"ACVR1,ACVR1C,ARL6IP6,BAZ2B,CCDC148,CD302,CYTIP,DAPL1,DPP4,ERMN,FAP,FMNL2,GALNT13,GALNT5,GCA,GCG,GPD2,IFIH1,ITGB6,KCNH7,KCNJ3,LOC100144595,LY75,LY75-CD302,MARCH7,NR4A2,PKP4,PLA2R1,PRPF40A,PSMD14,RBMS1,RPRM,SLC4A10,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.EI.6885	2	153523730	243048759	25962	0.2002	NEUTRAL	NA	498	Too-Many
TCGA.AA.A01C.01A	2	153535520	158626860	83	0.2205	NEUTRAL	NA	13	"ACVR1,ACVR1C,ARL6IP6,CYTIP,ERMN,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NR4A2,PRPF40A,RPRM"
TCGA.AG.A011.01A	2	153535855	160245818	180	-0.0248	NEUTRAL	NA	20	"ACVR1,ACVR1C,ARL6IP6,BAZ2B,CCDC148,CYTIP,DAPL1,ERMN,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NR4A2,PKP4,PRPF40A,RPRM,TANC1,UPP2,WDSUB1"
TCGA.AG.3909.01A	2	153549516	155711190	23	-0.1151	NEUTRAL	NA	6	"ARL6IP6,GALNT13,KCNJ3,LOC100144595,PRPF40A,RPRM"
TCGA.G4.6626	2	153559643	165272423	2984	-0.0224	NEUTRAL	NA	38	"ACVR1,ACVR1C,ARL6IP6,BAZ2B,CCDC148,CD302,CYTIP,DAPL1,DPP4,ERMN,FAP,FIGN,GALNT13,GALNT5,GCA,GCG,GPD2,IFIH1,ITGB6,KCNH7,KCNJ3,LOC100144595,LY75,LY75-CD302,MARCH7,NR4A2,PKP4,PLA2R1,PRPF40A,PSMD14,RBMS1,RPRM,SLC4A10,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.AA.3850	2	153584420	154215086	203	-0.24665	NEUTRAL	NA	1	ARL6IP6
TCGA.CA.5254	2	153683595	174015167	5676	-0.4358	NEUTRAL	NA	87	"ABCB11,ACVR1,ACVR1C,B3GALT1,BAZ2B,BBS5,CCDC148,CCDC173,CD302,CERS6,COBLL1,CSRNP3,CYBRD1,CYTIP,DAPL1,DCAF17,DHRS9,DLX1,DLX2,DPP4,DYNC1I2,ERICH2,ERMN,FAP,FASTKD1,FIGN,G6PC2,GAD1,GALNT13,GALNT3,GALNT5,GCA,GCG,GORASP2,GPD2,GRB14,HAT1,IFIH1,ITGA6,ITGB6,KCNH7,KCNJ3,KLHL23,KLHL41,LOC100144595,LRP2,LY75,LY75-CD302,MARCH7,METAP1D,METTL5,METTL8,MYO3B,NOSTRIN,NR4A2,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PKP4,PLA2R1,PPIG,PSMD14,RAPGEF4,RBMS1,RPRM,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC25A12,SLC38A11,SLC4A10,SP5,SPC25,SSB,STK39,TANC1,TANK,TBR1,TLK1,TTC21B,UBR3,UPP2,WDSUB1,XIRP2,ZAK"
TCGA.AA.3811	2	153761030	157094847	841	-0.31	NEUTRAL	NA	4	"GALNT13,KCNJ3,LOC100144595,RPRM"
TCGA.AA.3844	2	153815089	158162130	1043	-0.4791	NEUTRAL	NA	7	"GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NR4A2,RPRM"
TCGA.AA.3982	2	153832098	158513201	1099	-0.5033	NEUTRAL	NA	10	"ACVR1C,CYTIP,ERMN,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NR4A2,RPRM"
TCGA.DY.A1DC	2	154944690	155196346	53	0.0104	NEUTRAL	NA	1	GALNT13
TCGA.CM.6675	2	154985278	236759171	23605	-0.0102	NEUTRAL	NA	435	Too-Many
TCGA.DY.A1DC	2	155242023	155308671	27	-0.0119	NEUTRAL	NA	2	"GALNT13,LOC100144595"
TCGA.DY.A1DC	2	155323034	163130029	1957	0.0483	NEUTRAL	NA	30	"ACVR1,ACVR1C,BAZ2B,CCDC148,CD302,CYTIP,DAPL1,DPP4,ERMN,FAP,GALNT5,GCG,GPD2,IFIH1,ITGB6,KCNJ3,LY75,LY75-CD302,MARCH7,NR4A2,PKP4,PLA2R1,PSMD14,RBMS1,SLC4A10,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.AG.A02G.01A	2	155555249	197673896	2389	-0.4351	NEUTRAL	NA	177	Too-Many
TCGA.AA.3989	2	155611798	175974423	5725	-0.0024	NEUTRAL	NA	95	"ABCB11,ACVR1,ACVR1C,ATF2,B3GALT1,BAZ2B,BBS5,CCDC148,CCDC173,CD302,CDCA7,CERS6,CHN1,CHRNA1,CIR1,COBLL1,CSRNP3,CYBRD1,CYTIP,DAPL1,DCAF17,DHRS9,DLX1,DLX2,DPP4,DYNC1I2,ERICH2,ERMN,FAP,FASTKD1,FIGN,G6PC2,GAD1,GALNT3,GALNT5,GCA,GCG,GORASP2,GPD2,GPR155,GRB14,HAT1,IFIH1,ITGA6,ITGB6,KCNH7,KCNJ3,KLHL23,KLHL41,LRP2,LY75,LY75-CD302,MARCH7,METAP1D,METTL5,METTL8,MYO3B,NOSTRIN,NR4A2,OLA1,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PKP4,PLA2R1,PPIG,PSMD14,RAPGEF4,RBMS1,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SCRN3,SLC25A12,SLC38A11,SLC4A10,SP3,SP5,SP9,SPC25,SSB,STK39,TANC1,TANK,TBR1,TLK1,TTC21B,UBR3,UPP2,WDSUB1,WIPF1,XIRP2,ZAK"
TCGA.AA.3867	2	155616283	156765866	219	-0.0861	NEUTRAL	NA	1	KCNJ3
TCGA.AA.3867	2	156768867	166340583	2420	0.074	NEUTRAL	NA	38	"ACVR1,ACVR1C,BAZ2B,CCDC148,CD302,COBLL1,CSRNP3,CYTIP,DAPL1,DPP4,ERMN,FAP,FIGN,GALNT5,GCA,GCG,GPD2,GRB14,IFIH1,ITGB6,KCNH7,LY75,LY75-CD302,MARCH7,NR4A2,PKP4,PLA2R1,PSMD14,RBMS1,SCN2A,SCN3A,SLC38A11,SLC4A10,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.AA.3811	2	157100422	162221693	1433	0.0472	NEUTRAL	NA	23	"ACVR1,ACVR1C,BAZ2B,CCDC148,CD302,CYTIP,DAPL1,ERMN,GALNT5,GPD2,ITGB6,LY75,LY75-CD302,MARCH7,NR4A2,PKP4,PLA2R1,PSMD14,RBMS1,TANC1,TANK,UPP2,WDSUB1"
TCGA.AA.3509.01A	2	157182249	162017752	285	0.1898	NEUTRAL	NA	22	"ACVR1,ACVR1C,BAZ2B,CCDC148,CD302,CYTIP,DAPL1,ERMN,GALNT5,GPD2,ITGB6,LY75,LY75-CD302,MARCH7,NR4A2,PKP4,PLA2R1,RBMS1,TANC1,TANK,UPP2,WDSUB1"
TCGA.AG.3906.01A	2	157182249	170150608	790	-0.057	NEUTRAL	NA	53	"ABCB11,ACVR1,ACVR1C,B3GALT1,BAZ2B,CCDC148,CD302,CERS6,COBLL1,CSRNP3,CYTIP,DAPL1,DHRS9,DPP4,ERMN,FAP,FIGN,G6PC2,GALNT3,GALNT5,GCA,GCG,GPD2,GRB14,IFIH1,ITGB6,KCNH7,LRP2,LY75,LY75-CD302,MARCH7,NOSTRIN,NR4A2,PKP4,PLA2R1,PSMD14,RBMS1,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,SPC25,STK39,TANC1,TANK,TBR1,TTC21B,UPP2,WDSUB1,XIRP2"
TCGA.AG.3909.01A	2	157332569	162251581	285	0.2925	NEUTRAL	NA	22	"ACVR1,ACVR1C,BAZ2B,CCDC148,CD302,CYTIP,DAPL1,ERMN,GALNT5,GPD2,ITGB6,LY75,LY75-CD302,MARCH7,PKP4,PLA2R1,PSMD14,RBMS1,TANC1,TANK,UPP2,WDSUB1"
TCGA.AG.A00C.01A	2	157332569	166775744	531	-0.1377	NEUTRAL	NA	39	"ACVR1,ACVR1C,BAZ2B,CCDC148,CD302,COBLL1,CSRNP3,CYTIP,DAPL1,DPP4,ERMN,FAP,FIGN,GALNT3,GALNT5,GCA,GCG,GPD2,GRB14,IFIH1,ITGB6,KCNH7,LY75,LY75-CD302,MARCH7,PKP4,PLA2R1,PSMD14,RBMS1,SCN2A,SCN3A,SLC38A11,SLC4A10,TANC1,TANK,TBR1,TTC21B,UPP2,WDSUB1"
TCGA.AA.A010.01A	2	157358205	158400906	43	-0.1875	NEUTRAL	NA	5	"ACVR1C,CYTIP,ERMN,GALNT5,GPD2"
TCGA.AA.3844	2	158163666	163130029	1367	-0.1507	NEUTRAL	NA	27	"ACVR1,ACVR1C,BAZ2B,CCDC148,CD302,CYTIP,DAPL1,DPP4,ERMN,FAP,GALNT5,GCG,IFIH1,ITGB6,LY75,LY75-CD302,MARCH7,PKP4,PLA2R1,PSMD14,RBMS1,SLC4A10,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.AA.3982	2	158514968	163084479	1286	-0.0563	NEUTRAL	NA	22	"ACVR1,BAZ2B,CCDC148,CD302,DAPL1,DPP4,FAP,GCG,ITGB6,LY75,LY75-CD302,MARCH7,PKP4,PLA2R1,PSMD14,RBMS1,SLC4A10,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.AA.3941	2	158521850	159013720	153	0.1743	NEUTRAL	NA	2	"ACVR1,UPP2"
TCGA.AA.3850	2	158549741	163080981	1275	-0.10525	NEUTRAL	NA	22	"ACVR1,BAZ2B,CCDC148,CD302,DAPL1,DPP4,FAP,GCG,ITGB6,LY75,LY75-CD302,MARCH7,PKP4,PLA2R1,PSMD14,RBMS1,SLC4A10,TANC1,TANK,TBR1,UPP2,WDSUB1"
TCGA.AA.A010.01A	2	158594021	158962594	12	-0.0992	NEUTRAL	NA	2	"ACVR1,UPP2"
TCGA.AG.3893	2	158843017	243048759	24520	-5.00E-04	NEUTRAL	NA	485	Too-Many
TCGA.AA.3941	2	159026539	159038335	9	-0.4463	NEUTRAL	NA	1	CCDC148
TCGA.AA.3941	2	159054923	159283123	75	-0.4047	NEUTRAL	NA	1	CCDC148
TCGA.AA.A010.01A	2	159165913	159434601	12	0.2468	NEUTRAL	NA	2	"CCDC148,PKP4"
TCGA.CK.5914.01A	2	159165913	159434601	12	0.0446	NEUTRAL	NA	2	"CCDC148,PKP4"
TCGA.AA.A01C.01A	2	159165913	160189014	68	0.0898	NEUTRAL	NA	6	"BAZ2B,CCDC148,DAPL1,PKP4,TANC1,WDSUB1"
TCGA.AA.A00L.01A	2	159170226	159663501	29	-0.4921	NEUTRAL	NA	3	"CCDC148,DAPL1,PKP4"
TCGA.AA.A00Q.01A	2	159170226	159663501	29	-0.3899	NEUTRAL	NA	3	"CCDC148,DAPL1,PKP4"
TCGA.AG.A01W.01A	2	159222843	159750500	27	0.1693	NEUTRAL	NA	3	"CCDC148,DAPL1,PKP4"
TCGA.AA.3941	2	159300802	161597536	714	0.1812	NEUTRAL	NA	13	"BAZ2B,CCDC148,CD302,DAPL1,ITGB6,LY75,LY75-CD302,MARCH7,PKP4,PLA2R1,RBMS1,TANC1,WDSUB1"
TCGA.AA.3697	2	159454037	243048759	24517	0.0691	NEUTRAL	NA	483	Too-Many
TCGA.AA.3930.01A	2	159514602	160055446	32	0.2399	NEUTRAL	NA	3	"DAPL1,PKP4,TANC1"
TCGA.EI.6513	2	159523802	213800365	14952	0.0155	NEUTRAL	NA	257	Too-Many
TCGA.AA.A00L.01A	2	159672170	160604279	26	-0.1146	NEUTRAL	NA	5	"BAZ2B,DAPL1,MARCH7,TANC1,WDSUB1"
TCGA.AA.A00Q.01A	2	159672170	160604279	22	-0.0219	NEUTRAL	NA	5	"BAZ2B,DAPL1,MARCH7,TANC1,WDSUB1"
TCGA.AA.A00D.01A	2	159954102	160604279	23	-0.1148	NEUTRAL	NA	4	"BAZ2B,MARCH7,TANC1,WDSUB1"
TCGA.AG.A01W.01A	2	159960461	160317143	22	0.335	NEUTRAL	NA	3	"BAZ2B,TANC1,WDSUB1"
TCGA.AA.3930.01A	2	160073976	179429069	1382	-0.0126	NEUTRAL	NA	109	Too-Many
TCGA.AA.A010.01A	2	160092503	160176769	10	0.1321	NEUTRAL	NA	2	"BAZ2B,WDSUB1"
TCGA.CK.5914.01A	2	160116236	160139136	5	-0.4884	NEUTRAL	NA	1	WDSUB1
TCGA.AA.A00N.01A	2	160176769	160205162	8	0.3558	NEUTRAL	NA	1	BAZ2B
TCGA.AA.A010.01A	2	160181295	160252222	17	-0.3072	NEUTRAL	NA	1	BAZ2B
TCGA.AG.A011.01A	2	160252222	160261309	5	-0.3235	NEUTRAL	NA	1	BAZ2B
TCGA.AA.A010.01A	2	160253531	160676190	38	0.2073	NEUTRAL	NA	5	"BAZ2B,CD302,LY75,LY75-CD302,MARCH7"
TCGA.AA.A01C.01A	2	160268808	160698717	38	0.0183	NEUTRAL	NA	5	"BAZ2B,CD302,LY75,LY75-CD302,MARCH7"
TCGA.AG.A011.01A	2	160268808	166165125	323	-0.0229	NEUTRAL	NA	24	"BAZ2B,CD302,COBLL1,DPP4,FAP,FIGN,GCA,GCG,GRB14,IFIH1,ITGB6,KCNH7,LY75,LY75-CD302,MARCH7,PLA2R1,PSMD14,RBMS1,SCN2A,SCN3A,SLC38A11,SLC4A10,TANK,TBR1"
TCGA.AG.A01W.01A	2	160342622	160384437	11	0.1026	NEUTRAL	NA	1	BAZ2B
TCGA.AG.A01W.01A	2	160506488	160738684	47	-0.2831	NEUTRAL	NA	4	"CD302,LY75,LY75-CD302,MARCH7"
TCGA.CK.5914.01A	2	160585497	160604279	5	-0.3462	NEUTRAL	NA	1	7-Mar
TCGA.AA.A00N.01A	2	160585497	160628313	11	0.195	NEUTRAL	NA	3	"CD302,LY75-CD302,MARCH7"
TCGA.CK.5914.01A	2	160608871	160636477	8	0.3633	NEUTRAL	NA	3	"CD302,LY75-CD302,MARCH7"
TCGA.AA.A00Q.01A	2	160608871	162279858	115	-0.4667	NEUTRAL	NA	10	"CD302,ITGB6,LY75,LY75-CD302,MARCH7,PLA2R1,PSMD14,RBMS1,TANK,TBR1"
TCGA.CK.5914.01A	2	160637346	160676190	9	-0.2591	NEUTRAL	NA	3	"CD302,LY75,LY75-CD302"
TCGA.AA.A010.01A	2	160688134	160728920	16	-0.4297	NEUTRAL	NA	2	"LY75,LY75-CD302"
TCGA.EI.6508	2	160688350	174963079	4206	0.0455	NEUTRAL	NA	70	"ABCB11,B3GALT1,BBS5,CCDC173,CDCA7,CERS6,COBLL1,CSRNP3,CYBRD1,DCAF17,DHRS9,DLX1,DLX2,DPP4,DYNC1I2,ERICH2,FAP,FASTKD1,FIGN,G6PC2,GAD1,GALNT3,GCA,GCG,GORASP2,GRB14,HAT1,IFIH1,ITGA6,ITGB6,KCNH7,KLHL23,KLHL41,LRP2,LY75,LY75-CD302,METAP1D,METTL5,METTL8,MYO3B,NOSTRIN,OLA1,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLA2R1,PPIG,PSMD14,RAPGEF4,RBMS1,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC25A12,SLC38A11,SLC4A10,SP3,SP5,SPC25,SSB,STK39,TANK,TBR1,TLK1,TTC21B,UBR3,XIRP2,ZAK"
TCGA.AA.A01C.01A	2	160706474	162272901	94	0.3119	NEUTRAL	NA	8	"ITGB6,LY75,LY75-CD302,PLA2R1,PSMD14,RBMS1,TANK,TBR1"
TCGA.AA.A010.01A	2	160755159	160873093	22	-0.2624	NEUTRAL	NA	3	"LY75,LY75-CD302,PLA2R1"
TCGA.AA.A01F.01A	2	160798332	242800876	4016	0.1212	NEUTRAL	NA	473	Too-Many
TCGA.AA.A010.01A	2	160876567	162036087	39	0.267	NEUTRAL	NA	4	"ITGB6,PLA2R1,RBMS1,TANK"
TCGA.AA.A00N.01A	2	160889418	160958206	5	-0.2829	NEUTRAL	NA	2	"ITGB6,PLA2R1"
TCGA.AA.A02K.01A	2	160994530	161030438	5	-0.5021	NEUTRAL	NA	1	ITGB6
TCGA.CM.6170	2	161016775	243048759	23966	0.0615	NEUTRAL	NA	473	Too-Many
TCGA.AA.A02K.01A	2	161051830	170550708	594	0.0597	NEUTRAL	NA	39	"ABCB11,B3GALT1,BBS5,CCDC173,CERS6,COBLL1,CSRNP3,DHRS9,DPP4,FAP,FASTKD1,FIGN,G6PC2,GALNT3,GCA,GCG,GRB14,IFIH1,ITGB6,KCNH7,KLHL41,LRP2,NOSTRIN,PPIG,PSMD14,RBMS1,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,SPC25,STK39,TANK,TBR1,TTC21B,XIRP2"
TCGA.AA.A00D.01A	2	161056458	162930387	57	-0.3535	NEUTRAL	NA	7	"DPP4,ITGB6,PSMD14,RBMS1,SLC4A10,TANK,TBR1"
TCGA.AA.3941	2	161597651	162258704	198	-0.2048	NEUTRAL	NA	2	"PSMD14,TANK"
TCGA.CK.5914.01A	2	162080384	162175259	6	-0.372	NEUTRAL	NA	2	"PSMD14,TANK"
TCGA.AA.A00N.01A	2	162175259	162241948	6	-0.0849	NEUTRAL	NA	1	PSMD14
TCGA.AA.A02E.01A	2	162226605	162881265	53	-0.2133	NEUTRAL	NA	4	"DPP4,PSMD14,SLC4A10,TBR1"
TCGA.AA.3811	2	162249205	168551847	1499	-0.2663	NEUTRAL	NA	22	"COBLL1,CSRNP3,DPP4,FAP,FIGN,GALNT3,GCA,GCG,GRB14,IFIH1,KCNH7,PSMD14,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,TBR1,TTC21B,XIRP2"
TCGA.AA.A010.01A	2	162279858	165809151	164	-0.095	NEUTRAL	NA	12	"COBLL1,DPP4,FAP,FIGN,GCA,GCG,GRB14,IFIH1,KCNH7,SLC38A11,SLC4A10,TBR1"
TCGA.AG.3909.01A	2	162480956	162851760	28	0.219	NEUTRAL	NA	2	"DPP4,SLC4A10"
TCGA.AG.A01W.01A	2	162589512	162612109	8	-0.0069	NEUTRAL	NA	1	SLC4A10
TCGA.AA.A01C.01A	2	162627427	163228318	102	0.2683	NEUTRAL	NA	7	"DPP4,FAP,GCA,GCG,IFIH1,KCNH7,SLC4A10"
TCGA.AG.4009.01A	2	162627427	170151089	491	0.0328	NEUTRAL	NA	29	"ABCB11,B3GALT1,CERS6,COBLL1,CSRNP3,DHRS9,DPP4,FAP,FIGN,G6PC2,GALNT3,GCA,GCG,GRB14,IFIH1,KCNH7,LRP2,NOSTRIN,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,SPC25,STK39,TTC21B,XIRP2"
TCGA.AA.A00L.01A	2	162696272	162813520	5	0.0626	NEUTRAL	NA	1	SLC4A10
TCGA.AA.A00N.01A	2	162862190	162930387	22	-0.398	NEUTRAL	NA	1	DPP4
TCGA.CK.5914.01A	2	162870840	162879186	8	-0.3126	NEUTRAL	NA	1	DPP4
TCGA.AG.3909.01A	2	162890014	162929851	8	-0.0131	NEUTRAL	NA	1	DPP4
TCGA.AA.A02E.01A	2	162890014	179401628	1035	0.192	NEUTRAL	NA	95	"ABCB11,AGPS,ATF2,ATP5G3,B3GALT1,BBS5,CCDC173,CDCA7,CERS6,CHN1,CHRNA1,CIR1,COBLL1,CSRNP3,CYBRD1,DCAF17,DFNB59,DHRS9,DLX1,DLX2,DPP4,DYNC1I2,ERICH2,EVX2,FAP,FASTKD1,FIGN,FKBP7,G6PC2,GAD1,GALNT3,GCA,GCG,GORASP2,GPR155,GRB14,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,IFIH1,ITGA6,KCNH7,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,NOSTRIN,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PRKRA,RAPGEF4,RBM45,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SCRN3,SLC25A12,SLC38A11,SP3,SP5,SP9,SPC25,SSB,STK39,TLK1,TTC21B,TTC30A,TTC30B,TTN,UBR3,WIPF1,XIRP2,ZAK"
TCGA.AA.A01K.01A	2	163000490	163693020	66	-0.1447	NEUTRAL	NA	5	"FAP,GCA,GCG,IFIH1,KCNH7"
TCGA.AG.3909.01A	2	163066388	163216639	35	-0.3003	NEUTRAL	NA	3	"FAP,GCA,IFIH1"
TCGA.CK.5914.01A	2	163070401	163124555	13	-0.1661	NEUTRAL	NA	2	"FAP,IFIH1"
TCGA.AA.A00N.01A	2	163076298	163216639	30	-0.4374	NEUTRAL	NA	3	"FAP,GCA,IFIH1"
TCGA.AA.3982	2	163084997	168551847	1365	-0.4915	NEUTRAL	NA	17	"COBLL1,CSRNP3,FAP,FIGN,GALNT3,GCA,GRB14,IFIH1,KCNH7,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,TTC21B,XIRP2"
TCGA.F5.6811.01A	2	163101633	166518355	146	0.0145	NEUTRAL	NA	10	"COBLL1,CSRNP3,FIGN,GCA,GRB14,IFIH1,KCNH7,SCN2A,SCN3A,SLC38A11"
TCGA.AA.3844	2	163153047	209359507	12610	-0.2615	NEUTRAL	NA	229	Too-Many
TCGA.DY.A1DC	2	163158655	163697313	106	0.0194	NEUTRAL	NA	3	"GCA,IFIH1,KCNH7"
TCGA.AA.A00F.01A	2	163163168	163216639	11	0.1835	NEUTRAL	NA	2	"GCA,IFIH1"
TCGA.AA.A00F.01A	2	163228318	170151089	293	-0.1365	NEUTRAL	NA	23	"ABCB11,B3GALT1,CERS6,COBLL1,CSRNP3,DHRS9,FIGN,G6PC2,GALNT3,GRB14,KCNH7,LRP2,NOSTRIN,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SPC25,STK39,TTC21B,XIRP2"
TCGA.AG.3909.01A	2	163228318	170151089	392	0.3712	NEUTRAL	NA	23	"ABCB11,B3GALT1,CERS6,COBLL1,CSRNP3,DHRS9,FIGN,G6PC2,GALNT3,GRB14,KCNH7,LRP2,NOSTRIN,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SPC25,STK39,TTC21B,XIRP2"
TCGA.DM.A282.01A	2	163228318	242842428	5853	-0.0026	NEUTRAL	NA	462	Too-Many
TCGA.CK.4948.01B	2	163291731	166810109	151	0.1019	NEUTRAL	NA	10	"COBLL1,CSRNP3,FIGN,GALNT3,GRB14,KCNH7,SCN2A,SCN3A,SLC38A11,TTC21B"
TCGA.AA.A01C.01A	2	163693020	166805855	133	0.3268	NEUTRAL	NA	10	"COBLL1,CSRNP3,FIGN,GALNT3,GRB14,KCNH7,SCN2A,SCN3A,SLC38A11,TTC21B"
TCGA.AA.A00Q.01A	2	163694894	164467600	4	0.257	NEUTRAL	NA	2	"FIGN,KCNH7"
TCGA.AA.A01K.01A	2	163694894	170177239	381	0.351	NEUTRAL	NA	23	"ABCB11,B3GALT1,CERS6,COBLL1,CSRNP3,DHRS9,FIGN,G6PC2,GALNT3,GRB14,KCNH7,LRP2,NOSTRIN,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SPC25,STK39,TTC21B,XIRP2"
TCGA.DY.A1DC	2	163867396	186610584	6649	0.0407	NEUTRAL	NA	107	Too-Many
TCGA.A6.A566	2	164084825	243048759	23141	0.0962	NEUTRAL	NA	461	Too-Many
TCGA.AH.6643	2	164648661	186777726	6506	-0.0375	NEUTRAL	NA	106	Too-Many
TCGA.DM.A28F	2	164846822	179262762	4496	-0.0047	NEUTRAL	NA	83	"ABCB11,AGPS,ATF2,ATP5G3,B3GALT1,BBS5,CCDC173,CDCA7,CERS6,CHN1,CHRNA1,CIR1,COBLL1,CSRNP3,CYBRD1,DCAF17,DHRS9,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,G6PC2,GAD1,GALNT3,GORASP2,GPR155,GRB14,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,NOSTRIN,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,RAPGEF4,RBM45,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SCRN3,SLC25A12,SLC38A11,SP3,SP5,SP9,SPC25,SSB,STK39,TLK1,TTC21B,TTC30A,TTC30B,UBR3,WIPF1,XIRP2,ZAK"
TCGA.NH.A6GC	2	165098965	165467534	62	0.0564	NEUTRAL	NA	1	GRB14
TCGA.G4.6626	2	165273792	165597299	66	-0.286	NEUTRAL	NA	2	"COBLL1,GRB14"
TCGA.AA.A00Q.01A	2	165349498	167133475	159	-0.4704	NEUTRAL	NA	10	"COBLL1,CSRNP3,GALNT3,GRB14,SCN1A,SCN2A,SCN3A,SCN9A,SLC38A11,TTC21B"
TCGA.D5.5538	2	165429536	172718244	2255	0.0084	NEUTRAL	NA	43	"ABCB11,B3GALT1,BBS5,CCDC173,CERS6,COBLL1,CSRNP3,CYBRD1,DCAF17,DHRS9,DYNC1I2,ERICH2,FASTKD1,G6PC2,GAD1,GALNT3,GORASP2,GRB14,KLHL23,KLHL41,LRP2,METTL5,METTL8,MYO3B,NOSTRIN,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC25A12,SLC38A11,SP5,SPC25,SSB,STK39,TLK1,TTC21B,UBR3,XIRP2"
TCGA.F5.6814	2	165437543	243048759	22952	0.0198	NEUTRAL	NA	460	Too-Many
TCGA.F4.6460	2	165461115	203703611	10400	-0.2289	NEUTRAL	NA	189	Too-Many
TCGA.NH.A6GC	2	165468185	233235330	19685	0.3327	NEUTRAL	NA	363	Too-Many
TCGA.G4.6626	2	165598297	186833704	6331	-0.0085	NEUTRAL	NA	105	Too-Many
TCGA.AG.A011.01A	2	166165632	190607960	1587	-0.3904	NEUTRAL	NA	116	Too-Many
TCGA.AA.A010.01A	2	166221606	166775744	42	-0.1379	NEUTRAL	NA	4	"CSRNP3,GALNT3,SCN2A,TTC21B"
TCGA.AA.3867	2	166381037	185134471	5792	0.1302	NEUTRAL	NA	99	"ABCB11,AGPS,ATF2,ATP5G3,B3GALT1,BBS5,CCDC141,CCDC173,CDCA7,CERKL,CERS6,CHN1,CHRNA1,CIR1,CSRNP3,CWC22,CYBRD1,DCAF17,DFNB59,DHRS9,DLX1,DLX2,DNAJC10,DUSP19,DYNC1I2,ERICH2,EVX2,FASTKD1,FKBP7,FRZB,G6PC2,GAD1,GALNT3,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA4,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NCKAP1,NEUROD1,NFE2L2,NOSTRIN,NUP35,OLA1,OSBPL6,PDE11A,PDE1A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PPP1R1C,PRKRA,RAPGEF4,RBM45,SCN1A,SCN7A,SCN9A,SCRN3,SESTD1,SLC25A12,SP3,SP5,SP9,SPC25,SSB,SSFA2,STK39,TLK1,TTC21B,TTC30A,TTC30B,TTN,UBE2E3,UBR3,WIPF1,XIRP2,ZAK,ZNF385B"
TCGA.F5.6811.01A	2	166600817	169500937	139	0.0649	NEUTRAL	NA	9	"B3GALT1,CERS6,GALNT3,SCN1A,SCN7A,SCN9A,STK39,TTC21B,XIRP2"
TCGA.AG.A00C.01A	2	166781021	166854496	14	0.1201	NEUTRAL	NA	2	"SCN1A,TTC21B"
TCGA.AA.A00N.01A	2	166810109	166866212	8	0.0835	NEUTRAL	NA	2	"SCN1A,TTC21B"
TCGA.AG.A00C.01A	2	166856158	170335995	244	-0.2194	NEUTRAL	NA	13	"ABCB11,B3GALT1,CERS6,DHRS9,G6PC2,LRP2,NOSTRIN,SCN1A,SCN7A,SCN9A,SPC25,STK39,XIRP2"
TCGA.AA.A010.01A	2	166866212	167085164	26	0.3714	NEUTRAL	NA	2	"SCN1A,SCN9A"
TCGA.AA.A01C.01A	2	166870204	169681105	109	0.2898	NEUTRAL	NA	8	"B3GALT1,CERS6,NOSTRIN,SCN1A,SCN7A,SCN9A,STK39,XIRP2"
TCGA.CK.4948.01B	2	166872068	177054599	767	0.0157	NEUTRAL	NA	66	"ABCB11,ATF2,ATP5G3,B3GALT1,BBS5,CCDC173,CDCA7,CERS6,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DHRS9,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,G6PC2,GAD1,GORASP2,GPR155,HAT1,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MYO3B,NOSTRIN,OLA1,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,RAPGEF4,SCN1A,SCN7A,SCN9A,SCRN3,SLC25A12,SP3,SP5,SP9,SPC25,SSB,STK39,TLK1,UBR3,WIPF1,XIRP2,ZAK"
TCGA.AA.A00D.01A	2	167083026	169023793	27	-0.103	NEUTRAL	NA	5	"B3GALT1,SCN7A,SCN9A,STK39,XIRP2"
TCGA.AA.A010.01A	2	167089803	167138142	9	-0.3835	NEUTRAL	NA	1	SCN9A
TCGA.AA.A00Q.01A	2	167141023	168997151	15	0.1758	NEUTRAL	NA	5	"B3GALT1,SCN7A,SCN9A,STK39,XIRP2"
TCGA.G4.6317	2	167196498	210433688	11910	0.0342	NEUTRAL	NA	217	Too-Many
TCGA.AA.A00N.01A	2	167262098	167279722	8	0.2927	NEUTRAL	NA	1	SCN7A
TCGA.AA.A010.01A	2	167262098	169684598	70	-0.1084	NEUTRAL	NA	6	"B3GALT1,CERS6,NOSTRIN,SCN7A,STK39,XIRP2"
TCGA.AA.3509.01A	2	168074649	170350197	177	0.2605	NEUTRAL	NA	11	"ABCB11,B3GALT1,BBS5,CERS6,DHRS9,G6PC2,LRP2,NOSTRIN,SPC25,STK39,XIRP2"
TCGA.AA.3982	2	168553124	169774070	508	-0.007	NEUTRAL	NA	6	"B3GALT1,CERS6,G6PC2,NOSTRIN,SPC25,STK39"
TCGA.AA.3811	2	168553124	180558929	3905	0.0966	NEUTRAL	NA	79	"ABCB11,AGPS,ATF2,ATP5G3,B3GALT1,BBS5,CCDC141,CCDC173,CDCA7,CERS6,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DFNB59,DHRS9,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,FKBP7,G6PC2,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,NOSTRIN,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PRKRA,RAPGEF4,RBM45,SCRN3,SESTD1,SLC25A12,SP3,SP5,SP9,SPC25,SSB,STK39,TLK1,TTC30A,TTC30B,TTN,UBR3,WIPF1,ZAK,ZNF385B"
TCGA.DM.A28H	2	168553340	186889259	5554	0.0155	NEUTRAL	NA	94	"ABCB11,AGPS,ATF2,ATP5G3,B3GALT1,BBS5,CCDC141,CCDC173,CDCA7,CERKL,CERS6,CHN1,CHRNA1,CIR1,CWC22,CYBRD1,DCAF17,DFNB59,DHRS9,DLX1,DLX2,DNAJC10,DUSP19,DYNC1I2,ERICH2,EVX2,FASTKD1,FKBP7,FRZB,FSIP2,G6PC2,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA4,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NCKAP1,NEUROD1,NFE2L2,NOSTRIN,NUP35,OLA1,OSBPL6,PDE11A,PDE1A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PPP1R1C,PRKRA,RAPGEF4,RBM45,SCRN3,SESTD1,SLC25A12,SP3,SP5,SP9,SPC25,SSB,SSFA2,STK39,TLK1,TTC30A,TTC30B,TTN,UBE2E3,UBR3,WIPF1,ZAK,ZNF385B,ZNF804A"
TCGA.AA.3941	2	168562597	169774070	506	0.1085	NEUTRAL	NA	6	"B3GALT1,CERS6,G6PC2,NOSTRIN,SPC25,STK39"
TCGA.AA.3850	2	168645405	169774070	480	-0.02035	NEUTRAL	NA	6	"B3GALT1,CERS6,G6PC2,NOSTRIN,SPC25,STK39"
TCGA.AA.A01Q.01A	2	168725538	176860196	430	0.1192	NEUTRAL	NA	52	"ABCB11,ATF2,ATP5G3,B3GALT1,BBS5,CCDC173,CDCA7,CERS6,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DHRS9,DLX1,DLX2,DYNC1I2,ERICH2,FASTKD1,G6PC2,GAD1,GORASP2,GPR155,HAT1,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MYO3B,NOSTRIN,OLA1,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,RAPGEF4,SCRN3,SLC25A12,SP3,SP5,SP9,SPC25,SSB,STK39,TLK1,UBR3,WIPF1,ZAK"
TCGA.AA.3861.01A	2	168821103	197530270	1843	0.0248	NEUTRAL	NA	129	Too-Many
TCGA.AZ.4684.01A	2	168869092	170344244	161	0.2833	NEUTRAL	NA	9	"ABCB11,BBS5,CERS6,DHRS9,G6PC2,LRP2,NOSTRIN,SPC25,STK39"
TCGA.QL.A97D	2	169297080	226954355	16778	-0.0852	NEUTRAL	NA	311	Too-Many
TCGA.AA.A00Q.01A	2	169312922	179363918	556	-0.3325	NEUTRAL	NA	73	"ABCB11,AGPS,ATF2,ATP5G3,BBS5,CCDC173,CDCA7,CERS6,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DFNB59,DHRS9,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,FKBP7,G6PC2,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,NOSTRIN,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PRKRA,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,SPC25,SSB,TLK1,TTC30A,TTC30B,UBR3,WIPF1,ZAK"
TCGA.F5.6811.01A	2	169544575	179131003	776	0.0014	NEUTRAL	NA	69	"ABCB11,AGPS,ATF2,ATP5G3,BBS5,CCDC173,CDCA7,CERS6,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DHRS9,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,G6PC2,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,NOSTRIN,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,SPC25,SSB,TLK1,TTC30A,TTC30B,UBR3,WIPF1,ZAK"
TCGA.AG.A01W.01A	2	169550826	169722101	27	0.3021	NEUTRAL	NA	2	"CERS6,NOSTRIN"
TCGA.AA.A010.01A	2	169711830	169733696	10	0.0073	NEUTRAL	NA	2	"NOSTRIN,SPC25"
TCGA.AA.A01C.01A	2	169711830	169792691	23	0.1103	NEUTRAL	NA	4	"ABCB11,G6PC2,NOSTRIN,SPC25"
TCGA.AG.3611.01A	2	169727893	169733696	4	0.1292	NEUTRAL	NA	1	SPC25
TCGA.AG.3611.01A	2	169745691	172930301	261	-0.1904	NEUTRAL	NA	29	"ABCB11,BBS5,CCDC173,CYBRD1,DCAF17,DHRS9,DYNC1I2,ERICH2,FASTKD1,G6PC2,GAD1,GORASP2,HAT1,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MYO3B,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,SLC25A12,SP5,SPC25,SSB,TLK1,UBR3"
TCGA.AG.A01W.01A	2	169785194	169801853	7	0.2409	NEUTRAL	NA	1	ABCB11
TCGA.AA.A010.01A	2	169801105	169874498	19	-0.4603	NEUTRAL	NA	1	ABCB11
TCGA.AA.3982	2	169830050	170245694	165	-0.1116	NEUTRAL	NA	3	"ABCB11,DHRS9,LRP2"
TCGA.AA.3850	2	169858909	170100270	103	-0.03935	NEUTRAL	NA	3	"ABCB11,DHRS9,LRP2"
TCGA.AA.3941	2	169884647	174939167	1664	0.2381	NEUTRAL	NA	36	"ABCB11,BBS5,CCDC173,CDCA7,CYBRD1,DCAF17,DHRS9,DLX1,DLX2,DYNC1I2,ERICH2,FASTKD1,GAD1,GORASP2,HAT1,ITGA6,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MYO3B,OLA1,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,RAPGEF4,SLC25A12,SP3,SP5,SSB,TLK1,UBR3,ZAK"
TCGA.AA.A010.01A	2	169938050	170024997	22	-0.0614	NEUTRAL	NA	2	"DHRS9,LRP2"
TCGA.AA.A010.01A	2	170032894	170081783	23	0.0448	NEUTRAL	NA	1	LRP2
TCGA.AG.A01W.01A	2	170075054	174802242	370	0.3218	NEUTRAL	NA	33	"BBS5,CCDC173,CDCA7,CYBRD1,DCAF17,DLX1,DLX2,DYNC1I2,ERICH2,FASTKD1,GAD1,GORASP2,HAT1,ITGA6,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MYO3B,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,RAPGEF4,SLC25A12,SP3,SP5,SSB,TLK1,UBR3,ZAK"
TCGA.AA.A010.01A	2	170103866	170115505	4	0.2077	NEUTRAL	NA	1	LRP2
TCGA.AA.A010.01A	2	170127390	170440825	46	-0.4805	NEUTRAL	NA	4	"BBS5,FASTKD1,KLHL41,LRP2"
TCGA.AA.3850	2	170133751	170264276	44	-0.07195	NEUTRAL	NA	1	LRP2
TCGA.AA.A01C.01A	2	170147308	179401628	594	0.0964	NEUTRAL	NA	68	"AGPS,ATF2,ATP5G3,BBS5,CCDC173,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DFNB59,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,FKBP7,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PRKRA,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,SSB,TLK1,TTC30A,TTC30B,TTN,UBR3,WIPF1,ZAK"
TCGA.AG.3906.01A	2	170151089	170680967	70	0.3106	NEUTRAL	NA	11	"BBS5,CCDC173,FASTKD1,KLHL23,KLHL41,LRP2,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,SSB"
TCGA.AG.3909.01A	2	170163739	170335995	4	-0.319	NEUTRAL	NA	1	LRP2
TCGA.AA.A00F.01A	2	170163739	170428115	32	0.2427	NEUTRAL	NA	4	"BBS5,FASTKD1,KLHL41,LRP2"
TCGA.AA.A00D.01A	2	170163739	179606031	529	-0.3329	NEUTRAL	NA	68	"AGPS,ATF2,ATP5G3,BBS5,CCDC173,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DFNB59,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,FKBP7,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PRKRA,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,SSB,TLK1,TTC30A,TTC30B,TTN,UBR3,WIPF1,ZAK"
TCGA.AG.A01J.01A	2	170177239	179410549	597	-0.0433	NEUTRAL	NA	68	"AGPS,ATF2,ATP5G3,BBS5,CCDC173,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DFNB59,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,FKBP7,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PRKRA,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,SSB,TLK1,TTC30A,TTC30B,TTN,UBR3,WIPF1,ZAK"
TCGA.AA.3982	2	170248817	171111773	248	0.0959	NEUTRAL	NA	12	"BBS5,CCDC173,FASTKD1,KLHL23,KLHL41,METTL5,MYO3B,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,SSB,UBR3"
TCGA.AA.3850	2	170268471	175708303	1722	0.16505	NEUTRAL	NA	40	"BBS5,CCDC173,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DLX1,DLX2,DYNC1I2,ERICH2,FASTKD1,GAD1,GORASP2,GPR155,HAT1,ITGA6,KLHL23,KLHL41,METAP1D,METTL5,METTL8,MYO3B,OLA1,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,RAPGEF4,SCRN3,SLC25A12,SP3,SP5,SP9,SSB,TLK1,UBR3,WIPF1,ZAK"
TCGA.AZ.4684.01A	2	170349337	170734959	70	-0.2525	NEUTRAL	NA	11	"BBS5,CCDC173,FASTKD1,KLHL23,KLHL41,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,SSB,UBR3"
TCGA.AA.3509.01A	2	170354117	170471135	30	-0.4883	NEUTRAL	NA	4	"BBS5,FASTKD1,KLHL41,PPIG"
TCGA.AG.4009.01A	2	170371037	170425632	17	-0.3395	NEUTRAL	NA	2	"FASTKD1,KLHL41"
TCGA.AA.A01K.01A	2	170374703	170557495	37	0.1776	NEUTRAL	NA	6	"CCDC173,FASTKD1,KLHL41,PHOSPHO2,PHOSPHO2-KLHL23,PPIG"
TCGA.AG.3909.01A	2	170374703	170557495	37	0.13	NEUTRAL	NA	6	"CCDC173,FASTKD1,KLHL41,PHOSPHO2,PHOSPHO2-KLHL23,PPIG"
TCGA.AG.A00C.01A	2	170374703	170597848	39	0.0487	NEUTRAL	NA	7	"CCDC173,FASTKD1,KLHL23,KLHL41,PHOSPHO2,PHOSPHO2-KLHL23,PPIG"
TCGA.CL.4957	2	170375685	243048759	21441	0.2647	NEUTRAL	NA	438	Too-Many
TCGA.AA.A00N.01A	2	170377324	170413656	12	-0.1572	NEUTRAL	NA	2	"FASTKD1,KLHL41"
TCGA.AA.3967.01A	2	170393708	179544922	704	0.0511	NEUTRAL	NA	65	"AGPS,ATF2,ATP5G3,CCDC173,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DFNB59,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FASTKD1,FKBP7,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,KLHL23,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PRKRA,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,SSB,TLK1,TTC30A,TTC30B,TTN,UBR3,WIPF1,ZAK"
TCGA.CK.5914.01A	2	170411584	170428115	6	-0.3302	NEUTRAL	NA	1	FASTKD1
TCGA.AG.4009.01A	2	170428115	170557495	21	0.0557	NEUTRAL	NA	5	"CCDC173,FASTKD1,PHOSPHO2,PHOSPHO2-KLHL23,PPIG"
TCGA.AA.A00F.01A	2	170460532	170492951	11	-0.1169	NEUTRAL	NA	1	PPIG
TCGA.AA.A010.01A	2	170460532	170557495	20	0.0401	NEUTRAL	NA	4	"CCDC173,PHOSPHO2,PHOSPHO2-KLHL23,PPIG"
TCGA.AA.3509.01A	2	170487233	170605935	17	0.2715	NEUTRAL	NA	5	"CCDC173,KLHL23,PHOSPHO2,PHOSPHO2-KLHL23,PPIG"
TCGA.CM.6165.01A	2	170557495	170678404	19	-0.2791	NEUTRAL	NA	5	"KLHL23,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,SSB"
TCGA.AG.3891.01A	2	170557495	170680967	18	0.3316	NEUTRAL	NA	5	"KLHL23,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,SSB"
TCGA.AG.A00C.01A	2	170680967	171716198	70	-0.1439	NEUTRAL	NA	6	"ERICH2,GAD1,METTL5,MYO3B,SP5,UBR3"
TCGA.CM.6165.01A	2	170680967	176972497	443	0.0658	NEUTRAL	NA	38	"ATF2,ATP5G3,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,GAD1,GORASP2,GPR155,HAT1,HOXD11,HOXD12,HOXD13,ITGA6,KIAA1715,METAP1D,METTL5,METTL8,MYO3B,OLA1,PDK1,RAPGEF4,SCRN3,SLC25A12,SP3,SP5,SP9,TLK1,UBR3,WIPF1,ZAK"
TCGA.AG.A008.01A	2	170680967	179560008	682	0.0955	NEUTRAL	NA	58	"AGPS,ATF2,ATP5G3,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DFNB59,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FKBP7,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,OLA1,OSBPL6,PDE11A,PDK1,PLEKHA3,PRKRA,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,TLK1,TTC30A,TTC30B,TTN,UBR3,WIPF1,ZAK"
TCGA.AA.A010.01A	2	170684007	171509461	75	0.1804	NEUTRAL	NA	2	"MYO3B,UBR3"
TCGA.AA.A02K.01A	2	170732313	189849848	1150	0.0618	NEUTRAL	NA	84	"AGPS,ATF2,ATP5G3,CALCRL,CCDC141,CDCA7,CERKL,CHN1,CHRNA1,CIR1,COL3A1,CWC22,CYBRD1,DCAF17,DFNB59,DIRC1,DLX1,DLX2,DNAJC10,DUSP19,DYNC1I2,ERICH2,EVX2,FAM171B,FKBP7,FRZB,FSIP2,GAD1,GORASP2,GPR155,GULP1,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA4,ITGA6,ITGAV,KIAA1715,METAP1D,METTL8,MTX2,MYO3B,NCKAP1,NEUROD1,NFE2L2,NUP35,OLA1,OSBPL6,PDE11A,PDE1A,PDK1,PLEKHA3,PPP1R1C,PRKRA,RAPGEF4,RBM45,SCRN3,SESTD1,SLC25A12,SP3,SP5,SP9,SSFA2,TFPI,TLK1,TTC30A,TTC30B,TTN,UBE2E3,UBR3,WIPF1,ZAK,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.3509.01A	2	170747607	172546615	156	0.1897	NEUTRAL	NA	11	"CYBRD1,DCAF17,DYNC1I2,ERICH2,GAD1,GORASP2,METTL8,MYO3B,SP5,TLK1,UBR3"
TCGA.AZ.4684.01A	2	170747607	172546615	156	0.2504	NEUTRAL	NA	11	"CYBRD1,DCAF17,DYNC1I2,ERICH2,GAD1,GORASP2,METTL8,MYO3B,SP5,TLK1,UBR3"
TCGA.AG.3909.01A	2	170751639	172930301	171	0.188	NEUTRAL	NA	14	"CYBRD1,DCAF17,DYNC1I2,ERICH2,GAD1,GORASP2,HAT1,METAP1D,METTL8,MYO3B,SLC25A12,SP5,TLK1,UBR3"
TCGA.A6.3808.01A	2	170761596	174988265	322	0.2006	NEUTRAL	NA	23	"CDCA7,CYBRD1,DCAF17,DLX1,DLX2,DYNC1I2,ERICH2,GAD1,GORASP2,HAT1,ITGA6,METAP1D,METTL8,MYO3B,OLA1,PDK1,RAPGEF4,SLC25A12,SP3,SP5,TLK1,UBR3,ZAK"
TCGA.AG.3906.01A	2	170806088	172683264	147	-0.0333	NEUTRAL	NA	12	"CYBRD1,DCAF17,DYNC1I2,ERICH2,GAD1,GORASP2,METTL8,MYO3B,SLC25A12,SP5,TLK1,UBR3"
TCGA.AG.4009.01A	2	170806088	175945351	345	-0.0412	NEUTRAL	NA	31	"ATF2,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DLX1,DLX2,DYNC1I2,ERICH2,GAD1,GORASP2,GPR155,HAT1,ITGA6,METAP1D,METTL8,MYO3B,OLA1,PDK1,RAPGEF4,SCRN3,SLC25A12,SP3,SP5,SP9,TLK1,UBR3,WIPF1,ZAK"
TCGA.AA.A00F.01A	2	170806088	179260131	373	-0.0015	NEUTRAL	NA	52	"AGPS,ATF2,ATP5G3,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,METAP1D,METTL8,MTX2,MYO3B,NFE2L2,OLA1,OSBPL6,PDE11A,PDK1,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,TLK1,TTC30A,TTC30B,UBR3,WIPF1,ZAK"
TCGA.AA.A01K.01A	2	170806088	179544922	649	0.0977	NEUTRAL	NA	57	"AGPS,ATF2,ATP5G3,CDCA7,CHN1,CHRNA1,CIR1,CYBRD1,DCAF17,DFNB59,DLX1,DLX2,DYNC1I2,ERICH2,EVX2,FKBP7,GAD1,GORASP2,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA6,KIAA1715,METAP1D,METTL8,MTX2,MYO3B,NFE2L2,OLA1,OSBPL6,PDE11A,PDK1,PLEKHA3,PRKRA,RAPGEF4,RBM45,SCRN3,SLC25A12,SP3,SP5,SP9,TLK1,TTC30A,TTC30B,TTN,UBR3,WIPF1,ZAK"
TCGA.AG.3891.01A	2	170806088	189901335	1125	-0.1889	NEUTRAL	NA	85	"AGPS,ATF2,ATP5G3,CALCRL,CCDC141,CDCA7,CERKL,CHN1,CHRNA1,CIR1,COL3A1,COL5A2,CWC22,CYBRD1,DCAF17,DFNB59,DIRC1,DLX1,DLX2,DNAJC10,DUSP19,DYNC1I2,ERICH2,EVX2,FAM171B,FKBP7,FRZB,FSIP2,GAD1,GORASP2,GPR155,GULP1,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA4,ITGA6,ITGAV,KIAA1715,METAP1D,METTL8,MTX2,MYO3B,NCKAP1,NEUROD1,NFE2L2,NUP35,OLA1,OSBPL6,PDE11A,PDE1A,PDK1,PLEKHA3,PPP1R1C,PRKRA,RAPGEF4,RBM45,SCRN3,SESTD1,SLC25A12,SP3,SP5,SP9,SSFA2,TFPI,TLK1,TTC30A,TTC30B,TTN,UBE2E3,UBR3,WIPF1,ZAK,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.3982	2	171138613	174407339	1071	0.1251	NEUTRAL	NA	20	"CDCA7,CYBRD1,DCAF17,DLX1,DLX2,DYNC1I2,ERICH2,GAD1,GORASP2,HAT1,ITGA6,METAP1D,METTL8,MYO3B,PDK1,RAPGEF4,SLC25A12,SP5,TLK1,ZAK"
TCGA.EI.7004	2	171167830	190080362	5242	-0.3831	NEUTRAL	NA	84	"AGPS,ATF2,ATP5G3,CALCRL,CCDC141,CDCA7,CERKL,CHN1,CHRNA1,CIR1,COL3A1,COL5A2,CWC22,CYBRD1,DCAF17,DFNB59,DIRC1,DLX1,DLX2,DNAJC10,DUSP19,DYNC1I2,ERICH2,EVX2,FAM171B,FKBP7,FRZB,FSIP2,GAD1,GORASP2,GPR155,GULP1,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA4,ITGA6,ITGAV,KIAA1715,METAP1D,METTL8,MTX2,MYO3B,NCKAP1,NEUROD1,NFE2L2,NUP35,OLA1,OSBPL6,PDE11A,PDE1A,PDK1,PLEKHA3,PPP1R1C,PRKRA,RAPGEF4,RBM45,SCRN3,SESTD1,SLC25A12,SP3,SP5,SP9,SSFA2,TFPI,TLK1,TTC30A,TTC30B,TTN,UBE2E3,WIPF1,ZAK,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.A010.01A	2	171675041	171786201	17	0.1787	NEUTRAL	NA	2	"GAD1,GORASP2"
TCGA.AA.A00N.01A	2	171704137	171786201	8	0.3262	NEUTRAL	NA	2	"GAD1,GORASP2"
TCGA.AG.A00C.01A	2	171804799	171854235	12	0.3239	NEUTRAL	NA	2	"GORASP2,TLK1"
TCGA.BM.6198	2	171805869	171976293	38	-0.30935	NEUTRAL	NA	2	"GORASP2,TLK1"
TCGA.AH.6549.01A	2	171818115	171923296	22	-0.4299	NEUTRAL	NA	2	"GORASP2,TLK1"
TCGA.AA.A00N.01A	2	171819322	171862605	6	-0.1241	NEUTRAL	NA	2	"GORASP2,TLK1"
TCGA.AA.A010.01A	2	171854235	172291541	30	0.1019	NEUTRAL	NA	3	"DCAF17,METTL8,TLK1"
TCGA.AG.A00C.01A	2	171862605	172930940	89	-0.0274	NEUTRAL	NA	8	"CYBRD1,DCAF17,DYNC1I2,HAT1,METAP1D,METTL8,SLC25A12,TLK1"
TCGA.AH.6549.01A	2	171938108	185800530	951	-0.009	NEUTRAL	NA	68	"AGPS,ATF2,ATP5G3,CCDC141,CDCA7,CERKL,CHN1,CHRNA1,CIR1,CWC22,CYBRD1,DCAF17,DFNB59,DLX1,DLX2,DNAJC10,DUSP19,DYNC1I2,EVX2,FKBP7,FRZB,GPR155,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,ITGA4,ITGA6,KIAA1715,METAP1D,METTL8,MTX2,NCKAP1,NEUROD1,NFE2L2,NUP35,OLA1,OSBPL6,PDE11A,PDE1A,PDK1,PLEKHA3,PPP1R1C,PRKRA,RAPGEF4,RBM45,SCRN3,SESTD1,SLC25A12,SP3,SP9,SSFA2,TLK1,TTC30A,TTC30B,TTN,UBE2E3,WIPF1,ZAK,ZNF385B,ZNF804A"
TCGA.AA.A00N.01A	2	171974202	172248501	10	0.3652	NEUTRAL	NA	2	"METTL8,TLK1"
TCGA.BM.6198	2	171983469	236436518	18915	0.08205	NEUTRAL	NA	363	Too-Many
TCGA.AA.A00N.01A	2	172314434	172337442	9	0.3141	NEUTRAL	NA	1	DCAF17
TCGA.AA.A010.01A	2	172337442	172683264	33	-0.0623	NEUTRAL	NA	4	"CYBRD1,DCAF17,DYNC1I2,SLC25A12"
TCGA.AA.A00N.01A	2	172546615	172704631	31	0.3762	NEUTRAL	NA	2	"DYNC1I2,SLC25A12"
TCGA.AA.3509.01A	2	172600518	175676986	219	0.0288	NEUTRAL	NA	20	"CDCA7,CHN1,CHRNA1,CIR1,DLX1,DLX2,DYNC1I2,GPR155,HAT1,ITGA6,METAP1D,OLA1,PDK1,RAPGEF4,SCRN3,SLC25A12,SP3,SP9,WIPF1,ZAK"
TCGA.AZ.4684.01A	2	172600518	175689107	221	0.1241	NEUTRAL	NA	20	"CDCA7,CHN1,CHRNA1,CIR1,DLX1,DLX2,DYNC1I2,GPR155,HAT1,ITGA6,METAP1D,OLA1,PDK1,RAPGEF4,SCRN3,SLC25A12,SP3,SP9,WIPF1,ZAK"
TCGA.CK.5914.01A	2	172712292	172966173	30	-0.0774	NEUTRAL	NA	5	"DLX1,DLX2,HAT1,METAP1D,SLC25A12"
TCGA.AA.A00N.01A	2	172750620	172864815	13	0.2581	NEUTRAL	NA	3	"HAT1,METAP1D,SLC25A12"
TCGA.AA.A010.01A	2	172778918	173825418	70	0.1576	NEUTRAL	NA	7	"DLX1,DLX2,HAT1,ITGA6,METAP1D,PDK1,RAPGEF4"
TCGA.AG.3906.01A	2	172778918	174783274	118	-0.0193	NEUTRAL	NA	10	"CDCA7,DLX1,DLX2,HAT1,ITGA6,METAP1D,PDK1,RAPGEF4,SP3,ZAK"
TCGA.AG.A00C.01A	2	172966826	173368802	23	-0.2101	NEUTRAL	NA	2	"DLX2,ITGA6"
TCGA.AG.3611.01A	2	173333846	175246401	74	-0.249	NEUTRAL	NA	9	"CDCA7,CIR1,ITGA6,OLA1,PDK1,RAPGEF4,SP3,SP9,ZAK"
TCGA.AG.A00C.01A	2	173423389	173435427	8	0.3644	NEUTRAL	NA	1	PDK1
TCGA.AG.A00C.01A	2	173450959	174128441	51	-0.1116	NEUTRAL	NA	3	"PDK1,RAPGEF4,ZAK"
TCGA.CK.5914.01A	2	173881831	173955711	13	0.1195	NEUTRAL	NA	2	"RAPGEF4,ZAK"
TCGA.AA.A010.01A	2	173913257	174783274	32	0.0081	NEUTRAL	NA	4	"CDCA7,RAPGEF4,SP3,ZAK"
TCGA.CA.5254	2	174025998	194148039	5378	-0.0021	NEUTRAL	NA	87	"AGPS,ANKAR,ASNSD1,ATF2,ATP5G3,C2orf88,CALCRL,CCDC141,CDCA7,CERKL,CHN1,CHRNA1,CIR1,COL3A1,COL5A2,CWC22,DFNB59,DIRC1,DNAJC10,DUSP19,EVX2,FAM171B,FKBP7,FRZB,FSIP2,GLS,GPR155,GULP1,HIBCH,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,INPP1,ITGA4,ITGAV,KIAA1715,MFSD6,MSTN,MTX2,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NFE2L2,NUP35,OLA1,ORMDL1,OSBPL6,OSGEPL1,PDE11A,PDE1A,PLEKHA3,PMS1,PPP1R1C,PRKRA,RBM45,SCRN3,SDPR,SESTD1,SLC40A1,SP3,SP9,SSFA2,STAT1,STAT4,TFPI,TMEFF2,TMEM194B,TTC30A,TTC30B,TTN,UBE2E3,WDR75,WIPF1,ZAK,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AG.3909.01A	2	174128441	174945828	19	-0.1712	NEUTRAL	NA	4	"CDCA7,OLA1,SP3,ZAK"
TCGA.AG.A00C.01A	2	174130741	175613286	66	0.2005	NEUTRAL	NA	10	"CDCA7,CHRNA1,CIR1,GPR155,OLA1,SCRN3,SP3,SP9,WIPF1,ZAK"
TCGA.CK.5914.01A	2	174223398	174232301	9	-0.2325	NEUTRAL	NA	1	CDCA7
TCGA.AA.3982	2	174480428	174939167	170	0.0905	NEUTRAL	NA	2	"OLA1,SP3"
TCGA.AA.A00N.01A	2	174828437	175093984	12	0.1653	NEUTRAL	NA	2	"OLA1,SP3"
TCGA.AA.A010.01A	2	174828437	175113139	15	-0.1364	NEUTRAL	NA	2	"OLA1,SP3"
TCGA.AG.3909.01A	2	174946635	175087714	5	0.3188	NEUTRAL	NA	1	OLA1
TCGA.AA.3941	2	174954300	175708303	197	0.3477	NEUTRAL	NA	8	"CHN1,CHRNA1,CIR1,GPR155,OLA1,SCRN3,SP9,WIPF1"
TCGA.AA.3982	2	174954300	177401735	650	-0.0103	NEUTRAL	NA	22	"ATF2,ATP5G3,CHN1,CHRNA1,CIR1,EVX2,GPR155,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2,OLA1,SCRN3,SP9,WIPF1"
TCGA.AG.3906.01A	2	174987857	175945351	68	-0.1351	NEUTRAL	NA	9	"ATF2,CHN1,CHRNA1,CIR1,GPR155,OLA1,SCRN3,SP9,WIPF1"
TCGA.AG.A01W.01A	2	174995853	175140789	20	-0.1096	NEUTRAL	NA	1	OLA1
TCGA.EI.6508	2	175070877	178160930	935	0.0148	NEUTRAL	NA	24	"ATF2,ATP5G3,CHN1,CHRNA1,CIR1,EVX2,GPR155,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2,NFE2L2,OLA1,SCRN3,SP9,WIPF1"
TCGA.CK.5914.01A	2	175087714	175445989	45	-0.2021	NEUTRAL	NA	6	"CIR1,GPR155,OLA1,SCRN3,SP9,WIPF1"
TCGA.AG.3909.01A	2	175093984	175260227	13	-0.3582	NEUTRAL	NA	3	"CIR1,OLA1,SP9"
TCGA.AG.A01W.01A	2	175144622	175374643	15	0.3152	NEUTRAL	NA	4	"CIR1,GPR155,SCRN3,SP9"
TCGA.AA.A010.01A	2	175234642	175809887	61	0.2148	NEUTRAL	NA	6	"CHN1,CHRNA1,CIR1,GPR155,SCRN3,WIPF1"
TCGA.AG.3611.01A	2	175252360	175431744	25	0.0146	NEUTRAL	NA	4	"CIR1,GPR155,SCRN3,WIPF1"
TCGA.AG.3909.01A	2	175287596	175300792	4	-0.2022	NEUTRAL	NA	2	"GPR155,SCRN3"
TCGA.AA.A00N.01A	2	175287596	175326074	11	0.0882	NEUTRAL	NA	2	"GPR155,SCRN3"
TCGA.AG.3909.01A	2	175304579	175318418	5	0.1268	NEUTRAL	NA	1	GPR155
TCGA.AG.3909.01A	2	175324594	175335081	6	-0.1893	NEUTRAL	NA	1	GPR155
TCGA.AG.3611.01A	2	175432552	176001057	25	-0.3512	NEUTRAL	NA	4	"ATF2,CHN1,CHRNA1,WIPF1"
TCGA.AG.A00C.01A	2	175614622	175945351	21	-0.2524	NEUTRAL	NA	3	"ATF2,CHN1,CHRNA1"
TCGA.A6.3808.01A	2	175664847	177134280	67	-0.2606	NEUTRAL	NA	15	"ATF2,ATP5G3,CHN1,EVX2,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2"
TCGA.AA.3850	2	175711941	179349226	1141	-0.09205	NEUTRAL	NA	27	"AGPS,ATF2,ATP5G3,CHN1,DFNB59,EVX2,FKBP7,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2,NFE2L2,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,TTC30A,TTC30B"
TCGA.AA.3941	2	175711941	180209322	1337	-0.0313	NEUTRAL	NA	30	"AGPS,ATF2,ATP5G3,CCDC141,CHN1,DFNB59,EVX2,FKBP7,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2,NFE2L2,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,SESTD1,TTC30A,TTC30B,TTN"
TCGA.AG.A00C.01A	2	175957752	175994804	8	0.3027	NEUTRAL	NA	1	ATF2
TCGA.AG.3909.01A	2	175957752	176972162	33	-0.1302	NEUTRAL	NA	7	"ATF2,ATP5G3,EVX2,HOXD11,HOXD12,HOXD13,KIAA1715"
TCGA.CK.5914.01A	2	175962124	176044769	12	-0.0802	NEUTRAL	NA	2	"ATF2,ATP5G3"
TCGA.AA.3989	2	175994719	192525535	4423	-0.0323	NEUTRAL	NA	73	"AGPS,ANKAR,ASNSD1,ATF2,ATP5G3,C2orf88,CALCRL,CCDC141,CERKL,COL3A1,COL5A2,CWC22,DFNB59,DIRC1,DNAJC10,DUSP19,EVX2,FAM171B,FKBP7,FRZB,FSIP2,GLS,GULP1,HIBCH,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,INPP1,ITGA4,ITGAV,KIAA1715,MFSD6,MSTN,MTX2,MYO1B,NAB1,NCKAP1,NEUROD1,NFE2L2,NUP35,ORMDL1,OSBPL6,OSGEPL1,PDE11A,PDE1A,PLEKHA3,PMS1,PPP1R1C,PRKRA,RBM45,SESTD1,SLC40A1,SSFA2,STAT1,STAT4,TFPI,TMEM194B,TTC30A,TTC30B,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AG.3906.01A	2	175994804	176860196	16	-0.132	NEUTRAL	NA	3	"ATF2,ATP5G3,KIAA1715"
TCGA.AG.4009.01A	2	175994804	176946887	20	-0.053	NEUTRAL	NA	4	"ATF2,ATP5G3,EVX2,KIAA1715"
TCGA.AG.A00C.01A	2	176001057	176829027	12	-0.3177	NEUTRAL	NA	3	"ATF2,ATP5G3,KIAA1715"
TCGA.AA.A010.01A	2	176001057	176860196	17	0.2823	NEUTRAL	NA	3	"ATF2,ATP5G3,KIAA1715"
TCGA.AG.3611.01A	2	176032308	176860196	15	-0.0958	NEUTRAL	NA	3	"ATF2,ATP5G3,KIAA1715"
TCGA.D5.5538	2	176300656	193567691	4638	0.0121	NEUTRAL	NA	74	"AGPS,ANKAR,ASNSD1,C2orf88,CALCRL,CCDC141,CERKL,COL3A1,COL5A2,CWC22,DFNB59,DIRC1,DNAJC10,DUSP19,EVX2,FAM171B,FKBP7,FRZB,FSIP2,GLS,GULP1,HIBCH,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,INPP1,ITGA4,ITGAV,KIAA1715,MFSD6,MSTN,MTX2,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NFE2L2,NUP35,ORMDL1,OSBPL6,OSGEPL1,PDE11A,PDE1A,PLEKHA3,PMS1,PPP1R1C,PRKRA,RBM45,SDPR,SESTD1,SLC40A1,SSFA2,STAT1,STAT4,TFPI,TMEFF2,TMEM194B,TTC30A,TTC30B,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.3509.01A	2	176835411	177135046	30	-0.1448	NEUTRAL	NA	12	"EVX2,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2"
TCGA.AZ.4684.01A	2	176835411	177135046	30	-0.1292	NEUTRAL	NA	12	"EVX2,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2"
TCGA.AG.3611.01A	2	176944788	177053479	19	-0.4788	NEUTRAL	NA	10	"EVX2,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9"
TCGA.A6.3810.01A	2	176946887	177014985	17	-0.1746	NEUTRAL	NA	7	"EVX2,HOXD10,HOXD11,HOXD12,HOXD13,HOXD8,HOXD9"
TCGA.CM.6165.01A	2	176973587	177054599	15	-0.2904	NEUTRAL	NA	7	"HOXD1,HOXD10,HOXD11,HOXD3,HOXD4,HOXD8,HOXD9"
TCGA.AA.A010.01A	2	177016345	179315629	112	0.0501	NEUTRAL	NA	13	"AGPS,HNRNPA3,HOXD1,HOXD3,HOXD4,MTX2,NFE2L2,OSBPL6,PDE11A,PRKRA,RBM45,TTC30A,TTC30B"
TCGA.A6.3810.01A	2	177016345	201719277	1473	0.2958	NEUTRAL	NA	95	"AGPS,ANKAR,ANKRD44,AOX1,ASNSD1,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CCDC141,CCDC150,CERKL,CLK1,COL3A1,COL5A2,COQ10B,CWC22,DFNB59,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FKBP7,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,HNRNPA3,HOXD1,HOXD3,HOXD4,HSPD1,HSPE1,HSPE1-MOB4,INPP1,ITGA4,ITGAV,KCTD18,MARS2,MFSD6,MOB4,MSTN,MTX2,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NFE2L2,NUP35,ORMDL1,OSBPL6,OSGEPL1,PDE11A,PDE1A,PGAP1,PLCL1,PLEKHA3,PMS1,PPP1R1C,PRKRA,RBM45,RFTN2,SATB2,SDPR,SESTD1,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,TTC30A,TTC30B,TTN,TYW5,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.A01Q.01A	2	177033803	179368460	111	0.0186	NEUTRAL	NA	15	"AGPS,DFNB59,FKBP7,HNRNPA3,HOXD1,HOXD3,MTX2,NFE2L2,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,TTC30A,TTC30B"
TCGA.AG.3906.01A	2	177033803	180857969	441	-0.0836	NEUTRAL	NA	20	"AGPS,CCDC141,CWC22,DFNB59,FKBP7,HNRNPA3,HOXD1,HOXD3,MTX2,NFE2L2,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,SESTD1,TTC30A,TTC30B,TTN,ZNF385B"
TCGA.AF.3914.01A	2	177036233	220037276	2670	0.1684	NEUTRAL	NA	213	Too-Many
TCGA.AG.3611.01A	2	177054599	179260131	89	-0.1675	NEUTRAL	NA	10	"AGPS,HNRNPA3,HOXD1,MTX2,NFE2L2,OSBPL6,PDE11A,RBM45,TTC30A,TTC30B"
TCGA.CM.6165.01A	2	177134280	198318685	1300	0.1285	NEUTRAL	NA	74	"AGPS,ANKAR,ANKRD44,ASNSD1,C2orf66,C2orf88,CALCRL,CCDC141,CCDC150,CERKL,COL3A1,COL5A2,COQ10B,CWC22,DFNB59,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FKBP7,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,HNRNPA3,INPP1,ITGA4,ITGAV,MFSD6,MSTN,MTX2,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NFE2L2,NUP35,ORMDL1,OSBPL6,OSGEPL1,PDE11A,PDE1A,PGAP1,PLEKHA3,PMS1,PPP1R1C,PRKRA,RBM45,SDPR,SESTD1,SF3B1,SLC39A10,SLC40A1,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,TTC30A,TTC30B,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AG.4009.01A	2	177135046	179300864	96	0.0525	NEUTRAL	NA	10	"AGPS,HNRNPA3,MTX2,NFE2L2,OSBPL6,PDE11A,PRKRA,RBM45,TTC30A,TTC30B"
TCGA.AG.3909.01A	2	177161525	177465658	10	0.2833	NEUTRAL	NA	1	MTX2
TCGA.AG.A00C.01A	2	177161525	177465658	10	-0.1535	NEUTRAL	NA	1	MTX2
TCGA.AZ.4684.01A	2	177202171	178326569	20	0.2082	NEUTRAL	NA	4	"AGPS,HNRNPA3,MTX2,NFE2L2"
TCGA.DM.A28M.01A	2	177202171	179360175	112	0.0273	NEUTRAL	NA	13	"AGPS,DFNB59,FKBP7,HNRNPA3,MTX2,NFE2L2,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,TTC30A,TTC30B"
TCGA.AA.3509.01A	2	177202171	179463546	181	0.2702	NEUTRAL	NA	14	"AGPS,DFNB59,FKBP7,HNRNPA3,MTX2,NFE2L2,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,TTC30A,TTC30B,TTN"
TCGA.CK.4948.01B	2	177202171	185800530	616	0.1194	NEUTRAL	NA	31	"AGPS,CCDC141,CERKL,CWC22,DFNB59,DNAJC10,DUSP19,FKBP7,FRZB,HNRNPA3,ITGA4,MTX2,NCKAP1,NEUROD1,NFE2L2,NUP35,OSBPL6,PDE11A,PDE1A,PLEKHA3,PPP1R1C,PRKRA,RBM45,SESTD1,SSFA2,TTC30A,TTC30B,TTN,UBE2E3,ZNF385B,ZNF804A"
TCGA.AA.3982	2	177422616	177567539	63	-0.1797	NEUTRAL	NA	0	None
TCGA.AA.3982	2	177577753	185141032	2254	-0.2817	NEUTRAL	NA	29	"AGPS,CCDC141,CERKL,CWC22,DFNB59,DNAJC10,DUSP19,FKBP7,FRZB,HNRNPA3,ITGA4,NCKAP1,NEUROD1,NFE2L2,NUP35,OSBPL6,PDE11A,PDE1A,PLEKHA3,PPP1R1C,PRKRA,RBM45,SESTD1,SSFA2,TTC30A,TTC30B,TTN,UBE2E3,ZNF385B"
TCGA.AG.3909.01A	2	178095481	178494084	25	0.052	NEUTRAL	NA	5	"AGPS,NFE2L2,PDE11A,TTC30A,TTC30B"
TCGA.AA.A00N.01A	2	178095481	178633975	36	0.2631	NEUTRAL	NA	5	"AGPS,NFE2L2,PDE11A,TTC30A,TTC30B"
TCGA.AG.A00C.01A	2	178284960	178977223	42	-0.16	NEUTRAL	NA	5	"AGPS,PDE11A,RBM45,TTC30A,TTC30B"
TCGA.EI.6508	2	178371738	187570585	2441	0.0273	NEUTRAL	NA	32	"AGPS,CCDC141,CERKL,CWC22,DFNB59,DNAJC10,DUSP19,FAM171B,FKBP7,FRZB,FSIP2,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,OSBPL6,PDE11A,PDE1A,PLEKHA3,PPP1R1C,PRKRA,RBM45,SESTD1,SSFA2,TTC30A,TTC30B,TTN,UBE2E3,ZC3H15,ZNF385B,ZNF804A"
TCGA.AZ.4684.01A	2	178378512	179463546	157	0.2871	NEUTRAL	NA	11	"AGPS,DFNB59,FKBP7,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,TTC30A,TTC30B,TTN"
TCGA.AG.3909.01A	2	178681503	178936201	9	0.0424	NEUTRAL	NA	1	PDE11A
TCGA.A6.3808.01A	2	178740539	179504720	178	-0.3263	NEUTRAL	NA	8	"DFNB59,FKBP7,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,TTN"
TCGA.AA.3939.01A	2	178878982	179208951	22	0.1589	NEUTRAL	NA	3	"OSBPL6,PDE11A,RBM45"
TCGA.AG.A00C.01A	2	178980952	178990369	7	0.3251	NEUTRAL	NA	1	RBM45
TCGA.AG.A02X.01A	2	178990369	220012337	2574	0.2353	NEUTRAL	NA	202	Too-Many
TCGA.AG.A00C.01A	2	178990682	179260131	25	-0.2524	NEUTRAL	NA	2	"OSBPL6,RBM45"
TCGA.AG.A01W.01A	2	179053762	179057133	6	-0.2206	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	2	179076706	179208090	105	0.3203	NEUTRAL	NA	1	OSBPL6
TCGA.F5.6811.01A	2	179131265	179198218	61	0.3701	NEUTRAL	NA	1	OSBPL6
TCGA.AG.3909.01A	2	179170872	179260131	24	0.3598	NEUTRAL	NA	1	OSBPL6
TCGA.AG.A01W.01A	2	179187393	179198197	12	0.2899	NEUTRAL	NA	1	OSBPL6
TCGA.F5.6811.01A	2	179202246	179244934	42	0.1178	NEUTRAL	NA	1	OSBPL6
TCGA.CK.4952.01A	2	179208423	179274429	70	-0.3098	NEUTRAL	NA	1	OSBPL6
TCGA.AA.3939.01A	2	179213913	179429069	82	-0.1837	NEUTRAL	NA	6	"DFNB59,FKBP7,OSBPL6,PLEKHA3,PRKRA,TTN"
TCGA.F5.6811.01A	2	179254000	211160983	2017	0.0015	NEUTRAL	NA	149	Too-Many
TCGA.DM.A28F	2	179263286	183136944	1156	0.355	NEUTRAL	NA	17	"CCDC141,CERKL,CWC22,DFNB59,FKBP7,ITGA4,NEUROD1,OSBPL6,PDE1A,PLEKHA3,PPP1R1C,PRKRA,SESTD1,SSFA2,TTN,UBE2E3,ZNF385B"
TCGA.CK.4952.01A	2	179274929	179358552	81	0.2512	NEUTRAL	NA	4	"DFNB59,FKBP7,PLEKHA3,PRKRA"
TCGA.AG.A00C.01A	2	179296776	179365751	24	0.2364	NEUTRAL	NA	4	"DFNB59,FKBP7,PLEKHA3,PRKRA"
TCGA.AG.4009.01A	2	179306283	179315629	6	-0.2155	NEUTRAL	NA	1	PRKRA
TCGA.CK.5914.01A	2	179306283	179365751	24	-0.5013	NEUTRAL	NA	4	"DFNB59,FKBP7,PLEKHA3,PRKRA"
TCGA.AA.A010.01A	2	179341782	179350316	4	0.0932	NEUTRAL	NA	2	"FKBP7,PLEKHA3"
TCGA.AG.3611.01A	2	179345540	191077665	504	-0.2495	NEUTRAL	NA	40	"ANKAR,ASNSD1,C2orf88,CALCRL,CCDC141,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,HIBCH,ITGA4,ITGAV,MSTN,NCKAP1,NEUROD1,NUP35,ORMDL1,OSGEPL1,PDE1A,PLEKHA3,PMS1,PPP1R1C,SESTD1,SLC40A1,SSFA2,TFPI,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.CK.4952.01A	2	179362285	187238128	280	-0.2381	NEUTRAL	NA	20	"CCDC141,CERKL,CWC22,DNAJC10,DUSP19,FRZB,FSIP2,ITGA4,NCKAP1,NEUROD1,NUP35,PDE1A,PLEKHA3,PPP1R1C,SESTD1,SSFA2,TTN,UBE2E3,ZNF385B,ZNF804A"
TCGA.AA.A00F.01A	2	179363918	182756744	139	-0.1628	NEUTRAL	NA	11	"CCDC141,CERKL,CWC22,ITGA4,NEUROD1,PLEKHA3,SESTD1,SSFA2,TTN,UBE2E3,ZNF385B"
TCGA.AA.A00Q.01A	2	179365751	179606031	48	0.054	NEUTRAL	NA	2	"PLEKHA3,TTN"
TCGA.AA.A010.01A	2	179368460	179392964	4	0.2777	NEUTRAL	NA	2	"PLEKHA3,TTN"
TCGA.AG.4009.01A	2	179368460	180857969	318	4.00E-04	NEUTRAL	NA	6	"CCDC141,CWC22,PLEKHA3,SESTD1,TTN,ZNF385B"
TCGA.AG.A00C.01A	2	179368460	190339400	674	-0.2109	NEUTRAL	NA	31	"CALCRL,CCDC141,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,PDE1A,PLEKHA3,PPP1R1C,SESTD1,SSFA2,TFPI,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.DM.A28M.01A	2	179391702	179531500	131	-0.2963	NEUTRAL	NA	1	TTN
TCGA.AA.A00L.01A	2	179392151	179606031	60	0.0948	NEUTRAL	NA	1	TTN
TCGA.AA.A01Q.01A	2	179392964	179658082	94	-0.4061	NEUTRAL	NA	1	TTN
TCGA.AA.A010.01A	2	179394666	179446226	49	-0.2234	NEUTRAL	NA	1	TTN
TCGA.AA.A00O.01A	2	179404451	219540705	2390	0.0514	NEUTRAL	NA	185	Too-Many
TCGA.AA.3930.01A	2	179436798	189849448	553	-0.1077	NEUTRAL	NA	28	"CALCRL,CCDC141,CERKL,COL3A1,CWC22,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SESTD1,SSFA2,TFPI,TTN,UBE2E3,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.3939.01A	2	179444316	179500178	56	-0.079	NEUTRAL	NA	1	TTN
TCGA.AA.A02E.01A	2	179446226	179489973	43	0.2222	NEUTRAL	NA	1	TTN
TCGA.AA.3815.01A	2	179476767	179543419	64	-0.3662	NEUTRAL	NA	1	TTN
TCGA.AA.A01C.01A	2	179481159	179482934	4	-0.0645	NEUTRAL	NA	1	TTN
TCGA.AG.A00H.01A	2	179485811	179494001	5	0.0849	NEUTRAL	NA	1	TTN
TCGA.AA.A01I.01A	2	179496890	179497887	3	0.1247	NEUTRAL	NA	1	TTN
TCGA.AA.A01I.01A	2	179502025	242813848	3924	0.1464	NEUTRAL	NA	373	Too-Many
TCGA.AG.A00H.01A	2	179504374	179539707	29	0.1175	NEUTRAL	NA	1	TTN
TCGA.AA.3939.01A	2	179504374	188223723	457	-0.1927	NEUTRAL	NA	24	"CALCRL,CCDC141,CERKL,CWC22,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SESTD1,SSFA2,TTN,UBE2E3,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AZ.4684.01A	2	179510606	179529127	15	0.336	NEUTRAL	NA	1	TTN
TCGA.AA.A02E.01A	2	179514230	179523696	9	-0.1625	NEUTRAL	NA	1	TTN
TCGA.AG.A01J.01A	2	179514230	197157238	848	0.1176	NEUTRAL	NA	54	"ANKAR,ASNSD1,C2orf88,CALCRL,CCDC141,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GULP1,HECW2,HIBCH,INPP1,ITGA4,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NUP35,ORMDL1,OSGEPL1,PDE1A,PMS1,PPP1R1C,SDPR,SESTD1,SLC39A10,SLC40A1,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.A02H.01A	2	179519467	216289776	2035	0.1639	NEUTRAL	NA	155	Too-Many
TCGA.AA.A02E.01A	2	179527637	179542381	15	0.3345	NEUTRAL	NA	1	TTN
TCGA.AA.A010.01A	2	179535759	179546336	17	0.0997	NEUTRAL	NA	1	TTN
TCGA.AG.A023.01A	2	179539707	201535336	1093	0.0678	NEUTRAL	NA	77	"ANKAR,ANKRD44,AOX1,ASNSD1,BOLL,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CCDC141,CCDC150,CERKL,COL3A1,COL5A2,COQ10B,CWC22,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,ITGA4,ITGAV,KCTD18,MARS2,MFSD6,MOB4,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NUP35,ORMDL1,OSGEPL1,PDE1A,PGAP1,PLCL1,PMS1,PPP1R1C,RFTN2,SATB2,SDPR,SESTD1,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,TTN,TYW5,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.A017.01A	2	179540588	179546079	11	-0.1539	NEUTRAL	NA	1	TTN
TCGA.AA.A02E.01A	2	179542792	179545755	8	-0.0211	NEUTRAL	NA	1	TTN
TCGA.AA.3815.01A	2	179544014	219204459	2370	-0.0726	NEUTRAL	NA	174	Too-Many
TCGA.CK.5914.01A	2	179544571	179574256	36	0.1381	NEUTRAL	NA	1	TTN
TCGA.AA.A02E.01A	2	179546079	179563508	23	-0.305	NEUTRAL	NA	1	TTN
TCGA.AA.A01C.01A	2	179546079	179572221	32	-0.0562	NEUTRAL	NA	1	TTN
TCGA.AA.3967.01A	2	179554494	203079032	1296	-0.0404	NEUTRAL	NA	98	"ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,ASNSD1,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CASP10,CASP8,CCDC141,CCDC150,CDK15,CERKL,CFLAR,CLK1,COL3A1,COL5A2,COQ10B,CWC22,DIRC1,DNAH7,DNAJC10,DUSP19,FAM126B,FAM171B,FRZB,FSIP2,FZD7,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,ITGA4,ITGAV,KCTD18,KIAA2012,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NDUFB3,NEUROD1,NIF3L1,NUP35,ORC2,ORMDL1,OSGEPL1,PDE1A,PGAP1,PLCL1,PMS1,PPIL3,PPP1R1C,RFTN2,SATB2,SDPR,SESTD1,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,SSFA2,STAT1,STAT4,STK17B,STRADB,SUMO1,TFPI,TMEFF2,TMEM194B,TMEM237,TRAK2,TTN,TYW5,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.DM.A28M.01A	2	179563508	185800530	325	-0.014	NEUTRAL	NA	18	"CCDC141,CERKL,CWC22,DNAJC10,DUSP19,FRZB,ITGA4,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SESTD1,SSFA2,TTN,UBE2E3,ZNF385B,ZNF804A"
TCGA.AA.A02E.01A	2	179565791	179569854	7	-0.027	NEUTRAL	NA	1	TTN
TCGA.AG.A008.01A	2	179565791	204034423	1378	0.0929	NEUTRAL	NA	105	Too-Many
TCGA.AA.A017.01A	2	179566184	179572221	8	-0.2332	NEUTRAL	NA	1	TTN
TCGA.A6.3808.01A	2	179566684	179650307	81	-0.4004	NEUTRAL	NA	1	TTN
TCGA.AA.A010.01A	2	179569854	179572221	3	0.1544	NEUTRAL	NA	1	TTN
TCGA.AG.A015.01A	2	179571172	189899621	426	-0.1702	NEUTRAL	NA	29	"CALCRL,CCDC141,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SESTD1,SSFA2,TFPI,TTN,UBE2E3,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.A02E.01A	2	179571172	191897657	628	0.2955	NEUTRAL	NA	46	"ANKAR,ASNSD1,C2orf88,CALCRL,CCDC141,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GULP1,HIBCH,INPP1,ITGA4,ITGAV,MFSD6,MSTN,NAB1,NCKAP1,NEUROD1,NUP35,ORMDL1,OSGEPL1,PDE1A,PMS1,PPP1R1C,SESTD1,SLC40A1,SSFA2,STAT1,STAT4,TFPI,TMEM194B,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AG.A00H.01A	2	179572221	192254978	662	0.0883	NEUTRAL	NA	47	"ANKAR,ASNSD1,C2orf88,CALCRL,CCDC141,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GULP1,HIBCH,INPP1,ITGA4,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NCKAP1,NEUROD1,NUP35,ORMDL1,OSGEPL1,PDE1A,PMS1,PPP1R1C,SESTD1,SLC40A1,SSFA2,STAT1,STAT4,TFPI,TMEM194B,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.A010.01A	2	179574256	179628857	51	-0.4046	NEUTRAL	NA	1	TTN
TCGA.AA.A01C.01A	2	179602762	179604231	3	-0.1162	NEUTRAL	NA	1	TTN
TCGA.AA.A01K.01A	2	179602762	238636447	3443	-0.0699	NEUTRAL	NA	323	Too-Many
TCGA.AA.A00K.01A	2	179610285	242800876	3129	-0.3935	NEUTRAL	NA	372	Too-Many
TCGA.AA.A010.01A	2	179629222	179638349	8	0.1352	NEUTRAL	NA	1	TTN
TCGA.AA.A010.01A	2	179638885	179648795	14	-0.353	NEUTRAL	NA	1	TTN
TCGA.AA.A010.01A	2	179650307	180857969	82	0.1275	NEUTRAL	NA	5	"CCDC141,CWC22,SESTD1,TTN,ZNF385B"
TCGA.AA.A01Q.01A	2	179659088	181846739	46	0.0666	NEUTRAL	NA	6	"CCDC141,CWC22,SESTD1,TTN,UBE2E3,ZNF385B"
TCGA.AA.A017.01A	2	179664174	242813848	3689	-0.0183	NEUTRAL	NA	373	Too-Many
TCGA.AA.A01C.01A	2	179710322	198266077	819	0.1679	NEUTRAL	NA	59	"ANKAR,ANKRD44,ASNSD1,C2orf66,C2orf88,CALCRL,CCDC141,CCDC150,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,INPP1,ITGA4,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NUP35,ORMDL1,OSGEPL1,PDE1A,PGAP1,PMS1,PPP1R1C,SDPR,SESTD1,SF3B1,SLC39A10,SLC40A1,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.A00D.01A	2	179749599	179825919	3	0.1214	NEUTRAL	NA	1	CCDC141
TCGA.AA.A00A.01A	2	179749599	220501002	1993	-0.4557	NEUTRAL	NA	220	Too-Many
TCGA.AA.A00Q.01A	2	180015958	210658402	1260	-0.3876	NEUTRAL	NA	138	Too-Many
TCGA.AA.3941	2	180209365	185362148	1499	-0.4694	NEUTRAL	NA	14	"CERKL,CWC22,DNAJC10,DUSP19,FRZB,ITGA4,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SSFA2,UBE2E3,ZNF385B"
TCGA.AA.3811	2	180560303	190170484	2314	-0.2514	NEUTRAL	NA	26	"CALCRL,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SSFA2,TFPI,UBE2E3,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AG.3909.01A	2	180838351	182358013	21	0.0788	NEUTRAL	NA	3	"CWC22,ITGA4,UBE2E3"
TCGA.AY.A71X	2	181542054	243048759	17883	0.0024	NEUTRAL	NA	368	Too-Many
TCGA.AG.4009.01A	2	181846739	182347047	13	-0.4065	NEUTRAL	NA	2	"ITGA4,UBE2E3"
TCGA.AG.3906.01A	2	181922368	182521505	42	-0.0253	NEUTRAL	NA	3	"CERKL,ITGA4,UBE2E3"
TCGA.AA.A010.01A	2	182344842	182388110	13	-0.5101	NEUTRAL	NA	1	ITGA4
TCGA.AG.4009.01A	2	182350558	182521505	31	-0.0363	NEUTRAL	NA	2	"CERKL,ITGA4"
TCGA.AA.A010.01A	2	182388850	182409375	12	0.0326	NEUTRAL	NA	2	"CERKL,ITGA4"
TCGA.AG.A00Y.01A	2	182398949	189974914	305	-0.3349	NEUTRAL	NA	23	"CALCRL,CERKL,COL3A1,COL5A2,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SSFA2,TFPI,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AA.A01Q.01A	2	182402844	182757263	13	0.1331	NEUTRAL	NA	3	"CERKL,NEUROD1,SSFA2"
TCGA.A6.2678	2	182404138	240982790	17192	-0.0021	NEUTRAL	NA	333	Too-Many
TCGA.AG.3583	2	182515819	243048759	17150	1.00E-04	NEUTRAL	NA	366	Too-Many
TCGA.AA.A00N.01A	2	182521505	182757263	5	-0.3288	NEUTRAL	NA	3	"CERKL,NEUROD1,SSFA2"
TCGA.CK.5914.01A	2	182542500	182852505	21	-0.054	NEUTRAL	NA	3	"NEUROD1,PPP1R1C,SSFA2"
TCGA.AA.A00F.01A	2	182774576	183386965	22	-0.1839	NEUTRAL	NA	3	"PDE1A,PPP1R1C,SSFA2"
TCGA.AG.3909.01A	2	182774576	183386965	28	0.2661	NEUTRAL	NA	3	"PDE1A,PPP1R1C,SSFA2"
TCGA.AG.3906.01A	2	182774576	198318268	733	-0.0582	NEUTRAL	NA	52	"ANKAR,ANKRD44,ASNSD1,C2orf66,C2orf88,CALCRL,CCDC150,COL3A1,COL5A2,COQ10B,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,INPP1,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NUP35,ORMDL1,OSGEPL1,PDE1A,PGAP1,PMS1,PPP1R1C,SDPR,SF3B1,SLC39A10,SLC40A1,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AA.A01Q.01A	2	182774576	201534267	726	0.0413	NEUTRAL	NA	68	"ANKAR,ANKRD44,AOX1,ASNSD1,BOLL,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CCDC150,COL3A1,COL5A2,COQ10B,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,ITGAV,KCTD18,MARS2,MFSD6,MOB4,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NUP35,ORMDL1,OSGEPL1,PDE1A,PGAP1,PLCL1,PMS1,PPP1R1C,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,TYW5,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AG.4009.01A	2	182778530	190436400	306	-0.0422	NEUTRAL	NA	22	"CALCRL,COL3A1,COL5A2,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGAV,NCKAP1,NUP35,PDE1A,PPP1R1C,SLC40A1,SSFA2,TFPI,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AA.A010.01A	2	182783277	191375069	407	0.0138	NEUTRAL	NA	33	"ANKAR,ASNSD1,C2orf88,CALCRL,COL3A1,COL5A2,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,HIBCH,INPP1,ITGAV,MFSD6,MSTN,NCKAP1,NUP35,ORMDL1,OSGEPL1,PDE1A,PMS1,PPP1R1C,SLC40A1,SSFA2,TFPI,TMEM194B,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.DM.A28F	2	183157779	183531638	134	-0.0523	NEUTRAL	NA	1	PDE1A
TCGA.G4.6299	2	183529351	243048759	17325	0.2874	NEUTRAL	NA	361	Too-Many
TCGA.DM.A28F	2	183537398	199529605	3683	0.3479	NEUTRAL	NA	57	"ANKAR,ANKRD44,ASNSD1,BOLL,C2orf66,C2orf88,CALCRL,CCDC150,COL3A1,COL5A2,COQ10B,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,ITGAV,MARS2,MFSD6,MOB4,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NUP35,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,RFTN2,SDPR,SF3B1,SLC39A10,SLC40A1,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AA.A00F.01A	2	183582782	183593298	4	0.3447	NEUTRAL	NA	1	DNAJC10
TCGA.CK.5914.01A	2	183582782	183594530	6	-0.4062	NEUTRAL	NA	1	DNAJC10
TCGA.AA.A00D.01A	2	183582782	183595739	7	0.104	NEUTRAL	NA	1	DNAJC10
TCGA.AA.A00F.01A	2	183593543	190339400	260	-0.1709	NEUTRAL	NA	18	"CALCRL,COL3A1,COL5A2,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGAV,NCKAP1,NUP35,TFPI,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.CK.5914.01A	2	183595739	183600929	3	0.1971	NEUTRAL	NA	1	DNAJC10
TCGA.AA.A00D.01A	2	183597150	203378405	879	-0.4839	NEUTRAL	NA	88	"ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,ASNSD1,BMPR2,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CASP10,CASP8,CCDC150,CDK15,CFLAR,CLK1,COL3A1,COL5A2,COQ10B,DIRC1,DNAH7,DNAJC10,DUSP19,FAM126B,FAM171B,FRZB,FSIP2,FZD7,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,ITGAV,KCTD18,KIAA2012,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NDUFB3,NIF3L1,NOP58,NUP35,ORC2,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,PPIL3,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,STRADB,SUMO1,TFPI,TMEFF2,TMEM194B,TMEM237,TRAK2,TYW5,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AG.3909.01A	2	183605921	190430041	271	0.213	NEUTRAL	NA	19	"CALCRL,COL3A1,COL5A2,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGAV,NCKAP1,NUP35,SLC40A1,TFPI,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.G4.6310	2	184085787	184089144	6	-0.4853	NEUTRAL	NA	0	None
TCGA.G4.6310	2	184095112	243048759	17191	0.3617	NEUTRAL	NA	356	Too-Many
TCGA.A6.6653	2	184130271	184187963	16	-0.4525	NEUTRAL	NA	0	None
TCGA.A6.6653	2	184209163	194449487	2333	0.0074	NEUTRAL	NA	33	"ANKAR,ASNSD1,C2orf88,CALCRL,COL3A1,COL5A2,DIRC1,FAM171B,FSIP2,GLS,GULP1,HIBCH,INPP1,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PMS1,SDPR,SLC40A1,STAT1,STAT4,TFPI,TMEFF2,TMEM194B,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AA.3867	2	185141032	185460594	94	-0.4209	NEUTRAL	NA	0	None
TCGA.AA.3982	2	185164543	201154164	3742	-0.3786	NEUTRAL	NA	56	"ANKAR,ANKRD44,ASNSD1,BOLL,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CCDC150,COL3A1,COL5A2,COQ10B,DIRC1,DNAH7,FAM171B,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,ITGAV,MARS2,MFSD6,MOB4,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,RFTN2,SATB2,SDPR,SF3B1,SLC39A10,SLC40A1,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,TYW5,WDR75,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AA.3867	2	185468862	219267912	9176	0.0821	NEUTRAL	NA	160	Too-Many
TCGA.DY.A1DC	2	186628202	193190479	1605	0.0367	NEUTRAL	NA	32	"ANKAR,ASNSD1,C2orf88,CALCRL,COL3A1,COL5A2,DIRC1,FAM171B,FSIP2,GLS,GULP1,HIBCH,INPP1,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PMS1,SDPR,SLC40A1,STAT1,STAT4,TFPI,TMEFF2,TMEM194B,WDR75,ZC3H15,ZSWIM2"
TCGA.DM.A28M.01A	2	186678245	187701986	57	0.0291	NEUTRAL	NA	5	"FAM171B,FSIP2,ITGAV,ZC3H15,ZSWIM2"
TCGA.DM.A1D9	2	186678632	243048759	16640	0.002	NEUTRAL	NA	355	Too-Many
TCGA.CK.4948.01B	2	186697780	192254978	392	0.1115	NEUTRAL	NA	29	"ANKAR,ASNSD1,C2orf88,CALCRL,COL3A1,COL5A2,DIRC1,FAM171B,FSIP2,GLS,GULP1,HIBCH,INPP1,ITGAV,MFSD6,MSTN,MYO1B,NAB1,ORMDL1,OSGEPL1,PMS1,SLC40A1,STAT1,STAT4,TFPI,TMEM194B,WDR75,ZC3H15,ZSWIM2"
TCGA.AG.4015	2	186813062	243048759	16583	0.0028	NEUTRAL	NA	354	Too-Many
TCGA.G4.6626	2	186848663	186960816	33	-0.3813	NEUTRAL	NA	0	None
TCGA.AF.A56K	2	186884123	187061326	36	-0.2925	NEUTRAL	NA	0	None
TCGA.EI.6883	2	186918939	213187202	6801	-0.0093	NEUTRAL	NA	128	Too-Many
TCGA.G4.6626	2	186979236	213640576	6966	-0.0064	NEUTRAL	NA	128	Too-Many
TCGA.AF.A56K	2	187062703	238348848	15193	0.2768	NEUTRAL	NA	300	Too-Many
TCGA.A6.2681	2	187119136	243048759	16550	0.0175	NEUTRAL	NA	354	Too-Many
TCGA.CK.6746	2	187119136	243048759	16512	-0.0031	NEUTRAL	NA	354	Too-Many
TCGA.DM.A28H	2	187152855	197174738	2342	-0.0017	NEUTRAL	NA	35	"ANKAR,ASNSD1,C2orf88,CALCRL,COL3A1,COL5A2,DIRC1,DNAH7,FAM171B,GLS,GULP1,HECW2,HIBCH,INPP1,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PMS1,SDPR,SLC39A10,SLC40A1,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,WDR75,ZC3H15,ZSWIM2"
TCGA.AA.3850	2	187280163	187875180	132	-0.23375	NEUTRAL	NA	4	"FAM171B,ITGAV,ZC3H15,ZSWIM2"
TCGA.CK.5914.01A	2	187351056	187529883	30	0.1009	NEUTRAL	NA	2	"ITGAV,ZC3H15"
TCGA.AH.6549.01A	2	187351056	206630159	1294	0.001	NEUTRAL	NA	94	"ABI2,ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,ASNSD1,BMPR2,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CARF,CASP10,CASP8,CCDC150,CD28,CDK15,CFLAR,CLK1,COL3A1,COL5A2,COQ10B,CTLA4,CYP20A1,DIRC1,DNAH7,FAM117B,FAM126B,FAM171B,FZD7,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,ICOS,INPP1,ITGAV,KCTD18,KIAA2012,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NBEAL1,NDUFB3,NIF3L1,NOP58,NRP2,ORC2,ORMDL1,OSGEPL1,PARD3B,PGAP1,PLCL1,PMS1,PPIL3,RAPH1,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,STRADB,SUMO1,TFPI,TMEFF2,TMEM194B,TMEM237,TRAK2,TYW5,WDR12,WDR75,ZC3H15,ZSWIM2"
TCGA.AA.3529	2	187490370	206367369	4693	-0.0102	NEUTRAL	NA	92	"ABI2,ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,ASNSD1,BMPR2,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CARF,CASP10,CASP8,CCDC150,CD28,CDK15,CFLAR,CLK1,COL3A1,COL5A2,COQ10B,CTLA4,CYP20A1,DIRC1,DNAH7,FAM117B,FAM126B,FAM171B,FZD7,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,ICOS,INPP1,ITGAV,KCTD18,KIAA2012,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,ORMDL1,OSGEPL1,PARD3B,PGAP1,PLCL1,PMS1,PPIL3,RAPH1,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,STRADB,SUMO1,TFPI,TMEFF2,TMEM194B,TMEM237,TRAK2,TYW5,WDR12,WDR75,ZSWIM2"
TCGA.AA.A00L.01A	2	187520937	187540302	11	-0.0699	NEUTRAL	NA	1	ITGAV
TCGA.AA.A00L.01A	2	187541528	202900033	759	-0.512	NEUTRAL	NA	76	"ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,ASNSD1,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CALCRL,CASP10,CASP8,CCDC150,CDK15,CFLAR,CLK1,COL3A1,COL5A2,COQ10B,DIRC1,DNAH7,FAM126B,FAM171B,FZD7,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,ITGAV,KCTD18,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NDUFB3,NIF3L1,ORC2,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,PPIL3,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,STRADB,TFPI,TMEFF2,TMEM194B,TMEM237,TRAK2,TYW5,WDR75,ZSWIM2"
TCGA.AH.6643	2	187561805	243048759	16456	0.0557	NEUTRAL	NA	352	Too-Many
TCGA.CK.5914.01A	2	187709411	188247898	12	0.0692	NEUTRAL	NA	2	"CALCRL,ZSWIM2"
TCGA.DM.A28M.01A	2	187713560	188343353	14	0.2023	NEUTRAL	NA	3	"CALCRL,TFPI,ZSWIM2"
TCGA.AA.3544	2	187781678	226991825	11345	0.0518	NEUTRAL	NA	215	Too-Many
TCGA.EI.6508	2	187825647	196661998	2052	0.018	NEUTRAL	NA	29	"ANKAR,ASNSD1,C2orf88,CALCRL,COL3A1,COL5A2,DIRC1,DNAH7,GLS,GULP1,HIBCH,INPP1,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PMS1,SDPR,SLC39A10,SLC40A1,STAT1,STAT4,TFPI,TMEFF2,TMEM194B,WDR75"
TCGA.DM.A28M.01A	2	189348088	201397684	693	-0.0177	NEUTRAL	NA	51	"ANKAR,ANKRD44,ASNSD1,BOLL,C2orf47,C2orf66,C2orf69,C2orf88,CCDC150,COL3A1,COL5A2,COQ10B,DIRC1,DNAH7,GLS,GTF3C3,GULP1,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,KCTD18,MARS2,MFSD6,MOB4,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,TMEFF2,TMEM194B,TYW5,WDR75"
TCGA.CK.5914.01A	2	189433929	189849448	11	-0.0078	NEUTRAL	NA	3	"COL3A1,DIRC1,GULP1"
TCGA.CK.4952.01A	2	189661623	202865698	914	-0.0937	NEUTRAL	NA	68	"ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,ASNSD1,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CASP10,CASP8,CCDC150,CDK15,CFLAR,CLK1,COL3A1,COL5A2,COQ10B,DNAH7,FAM126B,GLS,GTF3C3,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,KCTD18,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NDUFB3,NIF3L1,ORC2,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,PPIL3,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,STRADB,TMEFF2,TMEM194B,TMEM237,TRAK2,TYW5,WDR75"
TCGA.AA.A02K.01A	2	189850375	189856155	8	-0.356	NEUTRAL	NA	1	COL3A1
TCGA.AA.A02K.01A	2	189856847	190618616	137	0.0856	NEUTRAL	NA	7	"ANKAR,ASNSD1,COL3A1,COL5A2,OSGEPL1,SLC40A1,WDR75"
TCGA.AA.A01D.01A	2	189860796	242813848	3315	-0.1124	NEUTRAL	NA	346	Too-Many
TCGA.AA.3930.01A	2	189871601	189901335	10	-0.1205	NEUTRAL	NA	2	"COL3A1,COL5A2"
TCGA.AG.A015.01A	2	189901335	189922054	17	0.2077	NEUTRAL	NA	1	COL5A2
TCGA.AG.3891.01A	2	189912875	189963373	36	-0.4639	NEUTRAL	NA	1	COL5A2
TCGA.AA.3939.01A	2	189922054	203972104	1012	-0.2357	NEUTRAL	NA	77	"ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,ASNSD1,BMPR2,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CARF,CASP10,CASP8,CCDC150,CDK15,CFLAR,CLK1,COL5A2,COQ10B,DNAH7,FAM117B,FAM126B,FZD7,GLS,GTF3C3,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,INPP1,KCTD18,KIAA2012,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,PPIL3,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,STRADB,SUMO1,TMEFF2,TMEM194B,TMEM237,TRAK2,TYW5,WDR12,WDR75"
TCGA.AG.A015.01A	2	189923118	193049030	248	-0.1782	NEUTRAL	NA	22	"ANKAR,ASNSD1,C2orf88,COL5A2,GLS,HIBCH,INPP1,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PMS1,SDPR,SLC40A1,STAT1,STAT4,TMEFF2,TMEM194B,WDR75"
TCGA.AA.3930.01A	2	189923511	190313123	31	-0.3053	NEUTRAL	NA	2	"COL5A2,WDR75"
TCGA.A6.3808.01A	2	189944634	198318685	491	0.1334	NEUTRAL	NA	33	"ANKAR,ANKRD44,ASNSD1,C2orf66,C2orf88,CCDC150,COL5A2,COQ10B,DNAH7,GLS,GTF3C3,HECW2,HIBCH,INPP1,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PGAP1,PMS1,SDPR,SF3B1,SLC39A10,SLC40A1,STAT1,STAT4,STK17B,TMEFF2,TMEM194B,WDR75"
TCGA.CK.5914.01A	2	189950403	190044181	10	0.1366	NEUTRAL	NA	1	COL5A2
TCGA.AG.3891.01A	2	189964749	201943554	646	-0.1189	NEUTRAL	NA	56	"ANKAR,ANKRD44,AOX1,ASNSD1,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CCDC150,CLK1,COL5A2,COQ10B,DNAH7,FAM126B,GLS,GTF3C3,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,KCTD18,MARS2,MFSD6,MOB4,MSTN,MYO1B,NAB1,NABP1,NDUFB3,NIF3L1,ORC2,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,PPIL3,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,TMEFF2,TMEM194B,TYW5,WDR75"
TCGA.AA.3850	2	190012745	192069041	548	-0.08305	NEUTRAL	NA	18	"ANKAR,ASNSD1,C2orf88,COL5A2,GLS,HIBCH,INPP1,MFSD6,MSTN,NAB1,ORMDL1,OSGEPL1,PMS1,SLC40A1,STAT1,STAT4,TMEM194B,WDR75"
TCGA.AA.3941	2	190012745	192492119	700	0.0592	NEUTRAL	NA	19	"ANKAR,ASNSD1,C2orf88,COL5A2,GLS,HIBCH,INPP1,MFSD6,MSTN,MYO1B,NAB1,ORMDL1,OSGEPL1,PMS1,SLC40A1,STAT1,STAT4,TMEM194B,WDR75"
TCGA.AG.A00Y.01A	2	190044181	197781115	401	-0.0699	NEUTRAL	NA	30	"ANKAR,ASNSD1,C2orf66,C2orf88,CCDC150,COL5A2,DNAH7,GLS,GTF3C3,HECW2,HIBCH,INPP1,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PGAP1,PMS1,SDPR,SLC39A10,SLC40A1,STAT1,STAT4,STK17B,TMEFF2,TMEM194B,WDR75"
TCGA.EI.7004	2	190080983	190132853	10	0.2489	NEUTRAL	NA	0	None
TCGA.EI.7004	2	190150204	221852534	9046	-0.0201	NEUTRAL	NA	192	Too-Many
TCGA.AA.3811	2	190176341	192609665	713	0.1151	NEUTRAL	NA	19	"ANKAR,ASNSD1,C2orf88,GLS,HIBCH,INPP1,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PMS1,SLC40A1,STAT1,STAT4,TMEM194B,WDR75"
TCGA.AA.3930.01A	2	190313482	203164930	907	0.0236	NEUTRAL	NA	70	"ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,ASNSD1,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CASP10,CASP8,CCDC150,CDK15,CFLAR,CLK1,COQ10B,DNAH7,FAM126B,FZD7,GLS,GTF3C3,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,INPP1,KCTD18,KIAA2012,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NDUFB3,NIF3L1,NOP58,ORC2,ORMDL1,OSGEPL1,PGAP1,PLCL1,PMS1,PPIL3,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SLC40A1,SPATS2L,STAT1,STAT4,STK17B,STRADB,SUMO1,TMEFF2,TMEM194B,TMEM237,TRAK2,TYW5,WDR75"
TCGA.AG.A00C.01A	2	190339907	190445069	9	0.1544	NEUTRAL	NA	2	"SLC40A1,WDR75"
TCGA.CK.5914.01A	2	190339907	190541378	15	-0.4869	NEUTRAL	NA	4	"ANKAR,ASNSD1,SLC40A1,WDR75"
TCGA.AA.A00F.01A	2	190339907	190682725	42	0.1971	NEUTRAL	NA	7	"ANKAR,ASNSD1,ORMDL1,OSGEPL1,PMS1,SLC40A1,WDR75"
TCGA.AA.A00N.01A	2	190554211	190560879	5	-0.5	NEUTRAL	NA	1	ANKAR
TCGA.CK.5914.01A	2	190554211	190611065	21	0.202	NEUTRAL	NA	1	ANKAR
TCGA.AG.3909.01A	2	190554211	190618635	24	-0.2159	NEUTRAL	NA	2	"ANKAR,OSGEPL1"
TCGA.AG.A00C.01A	2	190557751	190609405	18	-0.0086	NEUTRAL	NA	1	ANKAR
TCGA.AG.4009.01A	2	190557751	192246147	151	-0.0113	NEUTRAL	NA	15	"ANKAR,C2orf88,GLS,HIBCH,INPP1,MFSD6,MSTN,MYO1B,NAB1,ORMDL1,OSGEPL1,PMS1,STAT1,STAT4,TMEM194B"
TCGA.AA.A00N.01A	2	190569718	190595183	9	0.3246	NEUTRAL	NA	1	ANKAR
TCGA.AA.A00N.01A	2	190597806	190609405	6	-0.2669	NEUTRAL	NA	1	ANKAR
TCGA.AG.A011.01A	2	190609405	206927473	958	0.0272	NEUTRAL	NA	82	"ABI2,ALS2,ALS2CR11,ALS2CR12,ANKAR,ANKRD44,AOX1,BMPR2,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf88,CARF,CASP10,CASP8,CCDC150,CD28,CDK15,CFLAR,CLK1,COQ10B,CTLA4,CYP20A1,DNAH7,FAM117B,FAM126B,FZD7,GLS,GTF3C3,HECW2,HIBCH,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,ICOS,INO80D,INPP1,KCTD18,KIAA2012,MARS2,MFSD6,MOB4,MPP4,MSTN,MYO1B,NAB1,NABP1,NBEAL1,NDUFB3,NIF3L1,NOP58,NRP2,ORC2,ORMDL1,OSGEPL1,PARD3B,PGAP1,PLCL1,PMS1,PPIL3,RAPH1,RFTN2,SATB2,SDPR,SF3B1,SGOL2,SLC39A10,SPATS2L,STAT1,STAT4,STK17B,STRADB,SUMO1,TMEFF2,TMEM194B,TMEM237,TRAK2,TYW5,WDR12"
TCGA.CK.5914.01A	2	190615247	190682725	13	-0.5031	NEUTRAL	NA	3	"ORMDL1,OSGEPL1,PMS1"
TCGA.AA.A02K.01A	2	190656489	216279491	1572	0.1279	NEUTRAL	NA	120	Too-Many
TCGA.AG.A00C.01A	2	190682725	191854269	76	-0.0518	NEUTRAL	NA	10	"C2orf88,GLS,HIBCH,INPP1,MFSD6,MSTN,NAB1,PMS1,STAT1,TMEM194B"
TCGA.AA.3831	2	190694569	243048759	15765	0.0026	NEUTRAL	NA	338	Too-Many
TCGA.AA.A00F.01A	2	190708663	191855900	75	-0.1131	NEUTRAL	NA	10	"C2orf88,GLS,HIBCH,INPP1,MFSD6,MSTN,NAB1,PMS1,STAT1,TMEM194B"
TCGA.AG.3909.01A	2	190708663	191855900	79	0.231	NEUTRAL	NA	10	"C2orf88,GLS,HIBCH,INPP1,MFSD6,MSTN,NAB1,PMS1,STAT1,TMEM194B"
TCGA.AG.3611.01A	2	191109554	191152242	6	0.0914	NEUTRAL	NA	1	HIBCH
TCGA.AG.3611.01A	2	191155070	198299613	267	-0.2125	NEUTRAL	NA	22	"ANKRD44,C2orf66,CCDC150,DNAH7,GLS,GTF3C3,HECW2,HIBCH,INPP1,MFSD6,MYO1B,NAB1,NABP1,PGAP1,SDPR,SF3B1,SLC39A10,STAT1,STAT4,STK17B,TMEFF2,TMEM194B"
TCGA.CK.5914.01A	2	191175405	191788625	40	0.3085	NEUTRAL	NA	6	"GLS,HIBCH,INPP1,MFSD6,NAB1,TMEM194B"
TCGA.AA.A00N.01A	2	191208688	191300718	9	-0.4164	NEUTRAL	NA	2	"INPP1,MFSD6"
TCGA.AA.A00N.01A	2	191379170	191766626	17	-0.329	NEUTRAL	NA	3	"GLS,NAB1,TMEM194B"
TCGA.AA.A010.01A	2	191769703	192228442	69	0.1533	NEUTRAL	NA	4	"GLS,MYO1B,STAT1,STAT4"
TCGA.AA.A00F.01A	2	191859735	191919147	19	0.2763	NEUTRAL	NA	2	"STAT1,STAT4"
TCGA.CK.5914.01A	2	191864290	191898606	12	-0.2008	NEUTRAL	NA	2	"STAT1,STAT4"
TCGA.AG.A00C.01A	2	191900850	192251901	31	0.0289	NEUTRAL	NA	2	"MYO1B,STAT4"
TCGA.AG.3909.01A	2	191903878	192247941	28	0.1999	NEUTRAL	NA	2	"MYO1B,STAT4"
TCGA.AA.A02E.01A	2	191903878	192254978	31	0.2361	NEUTRAL	NA	2	"MYO1B,STAT4"
TCGA.AA.A00F.01A	2	191922704	192250573	26	-0.08	NEUTRAL	NA	2	"MYO1B,STAT4"
TCGA.AA.3850	2	192082110	192521982	160	-0.06585	NEUTRAL	NA	1	MYO1B
TCGA.AA.A00F.01A	2	192251901	192550275	19	0.249	NEUTRAL	NA	2	"MYO1B,NABP1"
TCGA.CK.4948.01B	2	192256819	192543664	16	-0.286	NEUTRAL	NA	2	"MYO1B,NABP1"
TCGA.AA.A02E.01A	2	192256819	192700717	20	-0.4601	NEUTRAL	NA	3	"MYO1B,NABP1,SDPR"
TCGA.AG.A00H.01A	2	192256819	220096633	1730	-0.143	NEUTRAL	NA	157	Too-Many
TCGA.AA.A010.01A	2	192261093	192283502	11	-0.5054	NEUTRAL	NA	1	MYO1B
TCGA.AG.3909.01A	2	192272781	192288516	7	-0.294	NEUTRAL	NA	1	MYO1B
TCGA.AA.A00N.01A	2	192278745	192288516	5	-0.3833	NEUTRAL	NA	1	MYO1B
TCGA.AG.4009.01A	2	192280789	197005898	95	-0.0072	NEUTRAL	NA	7	"DNAH7,MYO1B,NABP1,SDPR,SLC39A10,STK17B,TMEFF2"
TCGA.AA.A010.01A	2	192288516	197010583	100	0.2185	NEUTRAL	NA	7	"DNAH7,MYO1B,NABP1,SDPR,SLC39A10,STK17B,TMEFF2"
TCGA.AA.3850	2	192529394	192619486	26	0.04195	NEUTRAL	NA	1	NABP1
TCGA.AA.3989	2	192530867	243048759	15233	0.0212	NEUTRAL	NA	326	Too-Many
TCGA.CK.4948.01B	2	192546644	192922357	13	0.0791	NEUTRAL	NA	3	"NABP1,SDPR,TMEFF2"
TCGA.AA.3811	2	192615755	196262329	752	-0.4846	NEUTRAL	NA	2	"SDPR,TMEFF2"
TCGA.AA.3850	2	192684037	192832952	47	-0.11965	NEUTRAL	NA	2	"SDPR,TMEFF2"
TCGA.AG.3909.01A	2	192700717	192922357	8	0.2795	NEUTRAL	NA	2	"SDPR,TMEFF2"
TCGA.AG.A00C.01A	2	192700717	197105124	100	-0.1483	NEUTRAL	NA	6	"DNAH7,HECW2,SDPR,SLC39A10,STK17B,TMEFF2"
TCGA.AA.A00F.01A	2	192700717	198299613	151	-0.0964	NEUTRAL	NA	12	"ANKRD44,C2orf66,CCDC150,DNAH7,GTF3C3,HECW2,PGAP1,SDPR,SF3B1,SLC39A10,STK17B,TMEFF2"
TCGA.AG.3909.01A	2	193044263	193059062	4	-0.4811	NEUTRAL	NA	1	TMEFF2
TCGA.CK.4948.01B	2	193059062	207018311	901	-0.0208	NEUTRAL	NA	66	"ABI2,ALS2,ALS2CR11,ALS2CR12,ANKRD44,AOX1,BMPR2,BOLL,BZW1,C2orf47,C2orf66,C2orf69,CARF,CASP10,CASP8,CCDC150,CD28,CDK15,CFLAR,CLK1,COQ10B,CTLA4,CYP20A1,DNAH7,FAM117B,FAM126B,FZD7,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,ICOS,INO80D,KCTD18,KIAA2012,MARS2,MOB4,MPP4,NBEAL1,NDUFB3,NDUFS1,NIF3L1,NOP58,NRP2,ORC2,PARD3B,PGAP1,PLCL1,PPIL3,RAPH1,RFTN2,SATB2,SF3B1,SGOL2,SLC39A10,SPATS2L,STK17B,STRADB,SUMO1,TMEFF2,TMEM237,TRAK2,TYW5,WDR12"
TCGA.EI.7002	2	193225346	195352623	329	-0.0227	NEUTRAL	NA	0	None
TCGA.DY.A1DC	2	193242258	195851090	427	0.0069	NEUTRAL	NA	0	None
TCGA.A6.2686	2	193458578	237451034	13239	-0.3705	NEUTRAL	NA	266	Too-Many
TCGA.CA.5254	2	194159223	194589362	62	-0.3755	NEUTRAL	NA	0	None
TCGA.A6.6653	2	194568322	203343875	2210	0.0192	NEUTRAL	NA	50	"ALS2,ALS2CR11,ALS2CR12,ANKRD44,AOX1,BMPR2,BOLL,BZW1,C2orf47,C2orf66,C2orf69,CASP10,CASP8,CCDC150,CDK15,CFLAR,CLK1,COQ10B,DNAH7,FAM126B,FZD7,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,KCTD18,KIAA2012,MARS2,MOB4,MPP4,NDUFB3,NIF3L1,NOP58,ORC2,PGAP1,PLCL1,PPIL3,RFTN2,SATB2,SF3B1,SGOL2,SLC39A10,SPATS2L,STK17B,STRADB,SUMO1,TMEM237,TRAK2,TYW5"
TCGA.CA.5254	2	194603283	223664487	8557	-0.0107	NEUTRAL	NA	177	Too-Many
TCGA.EI.7002	2	195377109	243048759	14681	-0.0364	NEUTRAL	NA	323	Too-Many
TCGA.AA.3966	2	195788366	196566911	243	-0.4705	NEUTRAL	NA	1	SLC39A10
TCGA.DY.A1DC	2	195885105	211973157	4341	0.0363	NEUTRAL	NA	96	"ABI2,ACADL,ADAM23,ALS2,ALS2CR11,ALS2CR12,ANKRD44,AOX1,BMPR2,BOLL,BZW1,C2orf47,C2orf66,C2orf69,C2orf80,CARF,CASP10,CASP8,CCDC150,CCNYL1,CD28,CDK15,CFLAR,CLK1,COQ10B,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,CYP20A1,DNAH7,DYTN,EEF1B2,FAM117B,FAM126B,FASTKD2,FZD5,FZD7,GPR1,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,ICOS,IDH1,INO80D,KANSL1L,KCTD18,KIAA2012,KLF7,LANCL1,LOC200726,MAP2,MARS2,MDH1B,METTL21A,MOB4,MPP4,MYL1,NBEAL1,NDUFB3,NDUFS1,NIF3L1,NOP58,NRP2,ORC2,PARD3B,PGAP1,PIKFYVE,PLCL1,PLEKHM3,PPIL3,PTH2R,RAPH1,RFTN2,RPE,SATB2,SF3B1,SGOL2,SLC39A10,SPATS2L,STK17B,STRADB,SUMO1,TMEM237,TRAK2,TYW5,UNC80,WDR12,ZDBF2"
TCGA.T9.A92H	2	195903473	234639309	11734	0.029	NEUTRAL	NA	254	Too-Many
TCGA.AA.3850	2	196205773	198573611	608	0.00755	NEUTRAL	NA	17	"ANKRD44,C2orf66,CCDC150,COQ10B,DNAH7,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,PGAP1,RFTN2,SF3B1,SLC39A10,STK17B"
TCGA.AA.3811	2	196263583	199175150	743	0.012	NEUTRAL	NA	19	"ANKRD44,BOLL,C2orf66,CCDC150,COQ10B,DNAH7,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,PGAP1,PLCL1,RFTN2,SF3B1,SLC39A10,STK17B"
TCGA.AA.3941	2	196268695	197224402	283	0.1026	NEUTRAL	NA	4	"DNAH7,HECW2,SLC39A10,STK17B"
TCGA.AG.A015.01A	2	196548435	218938483	1388	-0.1798	NEUTRAL	NA	117	Too-Many
TCGA.AA.3966	2	196567175	243048759	14371	0.0746	NEUTRAL	NA	323	Too-Many
TCGA.EI.6508	2	196850193	199537085	708	0.0449	NEUTRAL	NA	18	"ANKRD44,BOLL,C2orf66,CCDC150,COQ10B,DNAH7,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,PGAP1,PLCL1,RFTN2,SF3B1,STK17B"
TCGA.AG.3909.01A	2	196915856	197027939	9	-0.0403	NEUTRAL	NA	2	"DNAH7,STK17B"
TCGA.AA.A010.01A	2	197065974	198511180	193	0.2435	NEUTRAL	NA	13	"ANKRD44,C2orf66,CCDC150,COQ10B,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,MOB4,PGAP1,RFTN2,SF3B1"
TCGA.AG.4009.01A	2	197065974	198540004	180	0.0335	NEUTRAL	NA	13	"ANKRD44,C2orf66,CCDC150,COQ10B,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,MOB4,PGAP1,RFTN2,SF3B1"
TCGA.AG.A01J.01A	2	197181947	197650115	46	0.2925	NEUTRAL	NA	3	"CCDC150,GTF3C3,HECW2"
TCGA.AG.A00C.01A	2	197185036	197767292	75	-0.2062	NEUTRAL	NA	5	"C2orf66,CCDC150,GTF3C3,HECW2,PGAP1"
TCGA.DM.A28H	2	197288041	243048759	14137	0.0051	NEUTRAL	NA	320	Too-Many
TCGA.AA.3941	2	197294375	198075464	187	0.1455	NEUTRAL	NA	6	"ANKRD44,C2orf66,CCDC150,GTF3C3,HECW2,PGAP1"
TCGA.AG.A01W.01A	2	197362136	197380405	7	-0.3009	NEUTRAL	NA	1	HECW2
TCGA.AG.3909.01A	2	197511028	197577346	15	0.0231	NEUTRAL	NA	1	CCDC150
TCGA.AG.3909.01A	2	197583210	197750495	46	0.3509	NEUTRAL	NA	4	"C2orf66,CCDC150,GTF3C3,PGAP1"
TCGA.AG.A01J.01A	2	197653877	242813848	2986	-0.0638	NEUTRAL	NA	318	Too-Many
TCGA.AG.A01W.01A	2	197683685	198248238	65	0.1319	NEUTRAL	NA	2	"ANKRD44,PGAP1"
TCGA.AG.A02G.01A	2	197705920	242813848	3025	-0.0215	NEUTRAL	NA	316	Too-Many
TCGA.D5.5538	2	197753144	204488646	1574	0.0121	NEUTRAL	NA	51	"ABI2,ALS2,ALS2CR11,ALS2CR12,ANKRD44,AOX1,BMPR2,BOLL,BZW1,C2orf47,C2orf69,CARF,CASP10,CASP8,CDK15,CFLAR,CLK1,COQ10B,CYP20A1,FAM117B,FAM126B,FZD7,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,KCTD18,KIAA2012,MARS2,MOB4,MPP4,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,PGAP1,PLCL1,PPIL3,RAPH1,RFTN2,SATB2,SF3B1,SGOL2,SPATS2L,STRADB,SUMO1,TMEM237,TRAK2,TYW5,WDR12"
TCGA.AG.3909.01A	2	197755494	197767292	6	-0.4195	NEUTRAL	NA	1	PGAP1
TCGA.AG.A00C.01A	2	197777569	197860046	5	0.3784	NEUTRAL	NA	2	"ANKRD44,PGAP1"
TCGA.AG.A00Y.01A	2	197784674	207173470	644	0.1792	NEUTRAL	NA	61	"ABI2,ALS2,ALS2CR11,ALS2CR12,ANKRD44,AOX1,BMPR2,BOLL,BZW1,C2orf47,C2orf69,CARF,CASP10,CASP8,CD28,CDK15,CFLAR,CLK1,COQ10B,CTLA4,CYP20A1,EEF1B2,FAM117B,FAM126B,FZD7,GPR1,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,ICOS,INO80D,KCTD18,KIAA2012,MARS2,MOB4,MPP4,NBEAL1,NDUFB3,NDUFS1,NIF3L1,NOP58,NRP2,ORC2,PARD3B,PGAP1,PLCL1,PPIL3,RAPH1,RFTN2,SATB2,SF3B1,SGOL2,SPATS2L,STRADB,SUMO1,TMEM237,TRAK2,TYW5,WDR12,ZDBF2"
TCGA.CK.5914.01A	2	197832070	198257684	31	0.2655	NEUTRAL	NA	2	"ANKRD44,SF3B1"
TCGA.AG.3909.01A	2	197860046	197878214	9	-0.3304	NEUTRAL	NA	1	ANKRD44
TCGA.AG.A00C.01A	2	197863006	197990519	21	-0.2452	NEUTRAL	NA	1	ANKRD44
TCGA.AA.A00N.01A	2	198001250	198269753	17	-0.0935	NEUTRAL	NA	2	"ANKRD44,SF3B1"
TCGA.AG.A00C.01A	2	198001250	198646409	70	0.1938	NEUTRAL	NA	10	"ANKRD44,BOLL,COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,RFTN2,SF3B1"
TCGA.AA.A01C.01A	2	198266447	198482477	42	-0.3568	NEUTRAL	NA	7	"COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MOB4,RFTN2,SF3B1"
TCGA.CK.5914.01A	2	198283172	198353675	16	0.2306	NEUTRAL	NA	3	"COQ10B,HSPD1,SF3B1"
TCGA.AA.3509.01A	2	198288511	198482477	35	-0.5127	NEUTRAL	NA	7	"COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MOB4,RFTN2,SF3B1"
TCGA.AG.A01N.01A	2	198288511	198571249	38	-0.2212	NEUTRAL	NA	8	"COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,RFTN2,SF3B1"
TCGA.AG.3611.01A	2	198318268	198436684	26	0.0877	NEUTRAL	NA	6	"COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MOB4,RFTN2"
TCGA.AA.A00F.01A	2	198318268	198646409	46	0.2097	NEUTRAL	NA	8	"BOLL,COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,RFTN2"
TCGA.CM.6165.01A	2	198324609	198357998	10	-0.3402	NEUTRAL	NA	2	"COQ10B,HSPD1"
TCGA.AG.3906.01A	2	198351853	198640355	37	-0.0082	NEUTRAL	NA	7	"BOLL,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,RFTN2"
TCGA.CK.5914.01A	2	198354869	198646409	42	-0.3701	NEUTRAL	NA	7	"BOLL,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,RFTN2"
TCGA.CM.6165.01A	2	198358844	237074506	2898	0.0372	NEUTRAL	NA	253	Too-Many
TCGA.A6.3808.01A	2	198367808	202979626	376	0.0499	NEUTRAL	NA	35	"ALS2,ALS2CR11,ALS2CR12,AOX1,BOLL,BZW1,C2orf47,C2orf69,CASP10,CASP8,CDK15,CFLAR,CLK1,FAM126B,FZD7,HSPE1,HSPE1-MOB4,KCTD18,KIAA2012,MARS2,MOB4,MPP4,NDUFB3,NIF3L1,ORC2,PLCL1,PPIL3,RFTN2,SATB2,SGOL2,SPATS2L,STRADB,TMEM237,TRAK2,TYW5"
TCGA.AG.3611.01A	2	198460658	216279490	822	-0.2113	NEUTRAL	NA	90	"ABCA12,ABI2,ACADL,ADAM23,ALS2,ALS2CR11,ALS2CR12,AOX1,ATIC,BARD1,BMPR2,BOLL,BZW1,C2orf47,C2orf69,C2orf80,CARF,CASP10,CASP8,CCNYL1,CD28,CDK15,CFLAR,CLK1,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,CYP20A1,DYTN,EEF1B2,ERBB4,FAM117B,FAM126B,FASTKD2,FN1,FZD5,FZD7,GPR1,ICA1L,ICOS,IDH1,IKZF2,INO80D,KANSL1L,KCTD18,KIAA2012,KLF7,LANCL1,LOC100130451,LOC200726,MAP2,MARS2,MDH1B,METTL21A,MPP4,MYL1,NBEAL1,NDUFB3,NDUFS1,NIF3L1,NOP58,NRP2,ORC2,PARD3B,PIKFYVE,PLCL1,PLEKHM3,PPIL3,PTH2R,RAPH1,RFTN2,RPE,SATB2,SGOL2,SPAG16,SPATS2L,STRADB,SUMO1,TMEM237,TRAK2,TYW5,UNC80,VWC2L,WDR12,ZDBF2"
TCGA.AA.A01C.01A	2	198495693	198607738	9	0.0739	NEUTRAL	NA	3	"BOLL,MARS2,RFTN2"
TCGA.AZ.4684.01A	2	198495693	198607738	10	0.1907	NEUTRAL	NA	3	"BOLL,MARS2,RFTN2"
TCGA.AA.3509.01A	2	198495693	201407307	77	0.1822	NEUTRAL	NA	11	"BOLL,C2orf47,C2orf69,KCTD18,MARS2,PLCL1,RFTN2,SATB2,SGOL2,SPATS2L,TYW5"
TCGA.AG.A01N.01A	2	198593202	198636532	6	0.1695	NEUTRAL	NA	1	BOLL
TCGA.AA.3861.01A	2	198640355	242842428	3447	-0.0396	NEUTRAL	NA	306	Too-Many
TCGA.AA.A010.01A	2	198643644	200828399	34	0.2372	NEUTRAL	NA	6	"BOLL,C2orf47,C2orf69,PLCL1,SATB2,TYW5"
TCGA.AG.A00C.01A	2	198650616	201354842	42	-0.2629	NEUTRAL	NA	8	"BOLL,C2orf47,C2orf69,KCTD18,PLCL1,SATB2,SPATS2L,TYW5"
TCGA.AZ.4684.01A	2	198650616	201407307	59	0.1205	NEUTRAL	NA	9	"BOLL,C2orf47,C2orf69,KCTD18,PLCL1,SATB2,SGOL2,SPATS2L,TYW5"
TCGA.AA.A00F.01A	2	198650616	201527529	59	-0.0931	NEUTRAL	NA	10	"AOX1,BOLL,C2orf47,C2orf69,KCTD18,PLCL1,SATB2,SGOL2,SPATS2L,TYW5"
TCGA.AG.4009.01A	2	198948432	201502885	76	-0.0182	NEUTRAL	NA	9	"AOX1,C2orf47,C2orf69,KCTD18,PLCL1,SATB2,SGOL2,SPATS2L,TYW5"
TCGA.AG.3906.01A	2	198948432	201950175	147	0.0031	NEUTRAL	NA	16	"AOX1,BZW1,C2orf47,C2orf69,CLK1,FAM126B,KCTD18,NDUFB3,NIF3L1,ORC2,PLCL1,PPIL3,SATB2,SGOL2,SPATS2L,TYW5"
TCGA.AA.3811	2	199186661	200236140	301	-0.5073	NEUTRAL	NA	1	SATB2
TCGA.AH.6544	2	199657019	238669882	12369	0.0265	NEUTRAL	NA	254	Too-Many
TCGA.EI.6508	2	199723739	204213502	1014	0.0472	NEUTRAL	NA	38	"ABI2,ALS2,ALS2CR11,ALS2CR12,AOX1,BMPR2,BZW1,C2orf47,C2orf69,CARF,CASP10,CASP8,CDK15,CFLAR,CLK1,CYP20A1,FAM117B,FAM126B,FZD7,ICA1L,KCTD18,KIAA2012,MPP4,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,PPIL3,SATB2,SGOL2,SPATS2L,STRADB,SUMO1,TMEM237,TRAK2,TYW5,WDR12"
TCGA.DM.A28F	2	199805166	205771479	1486	0.3542	NEUTRAL	NA	43	"ABI2,ALS2,ALS2CR11,ALS2CR12,AOX1,BMPR2,BZW1,C2orf47,C2orf69,CARF,CASP10,CASP8,CD28,CDK15,CFLAR,CLK1,CTLA4,CYP20A1,FAM117B,FAM126B,FZD7,ICA1L,ICOS,KCTD18,KIAA2012,MPP4,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,PARD3B,PPIL3,RAPH1,SATB2,SGOL2,SPATS2L,STRADB,SUMO1,TMEM237,TRAK2,TYW5,WDR12"
TCGA.DM.A1HB	2	200013579	213864026	3878	-0.0214	NEUTRAL	NA	78	"ABI2,ACADL,ADAM23,ALS2,ALS2CR11,ALS2CR12,AOX1,BMPR2,BZW1,C2orf47,C2orf69,C2orf80,CARF,CASP10,CASP8,CCNYL1,CD28,CDK15,CFLAR,CLK1,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,CYP20A1,DYTN,EEF1B2,ERBB4,FAM117B,FAM126B,FASTKD2,FZD5,FZD7,GPR1,ICA1L,ICOS,IDH1,INO80D,KANSL1L,KCTD18,KIAA2012,KLF7,LANCL1,LOC200726,MAP2,MDH1B,METTL21A,MPP4,MYL1,NBEAL1,NDUFB3,NDUFS1,NIF3L1,NOP58,NRP2,ORC2,PARD3B,PIKFYVE,PLEKHM3,PPIL3,PTH2R,RAPH1,RPE,SATB2,SGOL2,SPATS2L,STRADB,SUMO1,TMEM237,TRAK2,TYW5,UNC80,WDR12,ZDBF2"
TCGA.NH.A50U	2	200189479	243048759	13437	0.0166	NEUTRAL	NA	304	Too-Many
TCGA.AA.3941	2	200236140	201460840	356	0.0575	NEUTRAL	NA	8	"AOX1,C2orf47,C2orf69,KCTD18,SATB2,SGOL2,SPATS2L,TYW5"
TCGA.AA.3811	2	200236424	204784211	1029	0.2389	NEUTRAL	NA	41	"ABI2,ALS2,ALS2CR11,ALS2CR12,AOX1,BMPR2,BZW1,C2orf47,C2orf69,CARF,CASP10,CASP8,CD28,CDK15,CFLAR,CLK1,CTLA4,CYP20A1,FAM117B,FAM126B,FZD7,ICA1L,KCTD18,KIAA2012,MPP4,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,PPIL3,RAPH1,SATB2,SGOL2,SPATS2L,STRADB,SUMO1,TMEM237,TRAK2,TYW5,WDR12"
TCGA.AA.3850	2	200242611	202643442	644	0.01995	NEUTRAL	NA	25	"ALS2,ALS2CR11,ALS2CR12,AOX1,BZW1,C2orf47,C2orf69,CASP10,CASP8,CFLAR,CLK1,FAM126B,KCTD18,MPP4,NDUFB3,NIF3L1,ORC2,PPIL3,SATB2,SGOL2,SPATS2L,STRADB,TMEM237,TRAK2,TYW5"
TCGA.AA.A00N.01A	2	200298020	200820534	13	0.0852	NEUTRAL	NA	4	"C2orf47,C2orf69,SATB2,TYW5"
TCGA.AG.A01W.01A	2	200511855	201211131	62	0.2519	NEUTRAL	NA	4	"C2orf47,C2orf69,SPATS2L,TYW5"
TCGA.AG.A01N.01A	2	200789748	200812994	8	-0.1503	NEUTRAL	NA	2	"C2orf69,TYW5"
TCGA.CK.5914.01A	2	200789748	200820534	10	0.2704	NEUTRAL	NA	3	"C2orf47,C2orf69,TYW5"
TCGA.AG.3909.01A	2	200789748	200828399	13	-0.3888	NEUTRAL	NA	3	"C2orf47,C2orf69,TYW5"
TCGA.AA.A01C.01A	2	200803609	201459946	38	-0.0303	NEUTRAL	NA	6	"AOX1,C2orf47,KCTD18,SGOL2,SPATS2L,TYW5"
TCGA.CK.5914.01A	2	200823929	201173717	6	-0.4138	NEUTRAL	NA	2	"C2orf47,SPATS2L"
TCGA.AG.A01N.01A	2	200826464	234590532	2385	0.0688	NEUTRAL	NA	227	Too-Many
TCGA.AA.3982	2	201163555	201405387	111	0.0936	NEUTRAL	NA	3	"KCTD18,SGOL2,SPATS2L"
TCGA.AG.3909.01A	2	201170974	201354842	13	0.3765	NEUTRAL	NA	2	"KCTD18,SPATS2L"
TCGA.AA.A010.01A	2	201215913	201488533	48	0.1639	NEUTRAL	NA	4	"AOX1,KCTD18,SGOL2,SPATS2L"
TCGA.AA.A00N.01A	2	201397684	201448079	10	-0.509	NEUTRAL	NA	1	SGOL2
TCGA.CK.5914.01A	2	201397684	201448079	10	-0.2485	NEUTRAL	NA	1	SGOL2
TCGA.AG.3909.01A	2	201397684	201470239	18	-0.257	NEUTRAL	NA	2	"AOX1,SGOL2"
TCGA.AG.A00C.01A	2	201400726	201534267	39	-0.116	NEUTRAL	NA	2	"AOX1,SGOL2"
TCGA.AA.3509.01A	2	201440007	202215413	144	-0.2531	NEUTRAL	NA	13	"ALS2CR12,AOX1,BZW1,CASP10,CASP8,CFLAR,CLK1,FAM126B,NDUFB3,NIF3L1,ORC2,PPIL3,SGOL2"
TCGA.AA.3982	2	201442043	202385942	234	0.1039	NEUTRAL	NA	16	"ALS2CR11,ALS2CR12,AOX1,BZW1,CASP10,CASP8,CFLAR,CLK1,FAM126B,NDUFB3,NIF3L1,ORC2,PPIL3,SGOL2,STRADB,TRAK2"
TCGA.AG.A01W.01A	2	201444324	201493915	17	-0.1783	NEUTRAL	NA	2	"AOX1,SGOL2"
TCGA.DM.A28M.01A	2	201445173	231158909	2215	-0.08	NEUTRAL	NA	182	Too-Many
TCGA.AA.A00N.01A	2	201450796	201476065	12	0.1746	NEUTRAL	NA	1	AOX1
TCGA.AA.3941	2	201466731	202385942	222	0.3199	NEUTRAL	NA	15	"ALS2CR11,ALS2CR12,AOX1,BZW1,CASP10,CASP8,CFLAR,CLK1,FAM126B,NDUFB3,NIF3L1,ORC2,PPIL3,STRADB,TRAK2"
TCGA.AZ.4684.01A	2	201466946	202215413	136	-0.2303	NEUTRAL	NA	12	"ALS2CR12,AOX1,BZW1,CASP10,CASP8,CFLAR,CLK1,FAM126B,NDUFB3,NIF3L1,ORC2,PPIL3"
TCGA.AG.3909.01A	2	201473655	201531376	21	0.3663	NEUTRAL	NA	1	AOX1
TCGA.AG.A01W.01A	2	201498771	201849747	54	0.2065	NEUTRAL	NA	7	"AOX1,BZW1,CLK1,FAM126B,NIF3L1,ORC2,PPIL3"
TCGA.AG.4009.01A	2	201505763	201685854	21	-0.3312	NEUTRAL	NA	2	"AOX1,BZW1"
TCGA.AA.A01C.01A	2	201521516	201527529	5	0.1665	NEUTRAL	NA	1	AOX1
TCGA.AA.A01C.01A	2	201531376	202122923	84	-0.2541	NEUTRAL	NA	11	"AOX1,BZW1,CASP10,CASP8,CFLAR,CLK1,FAM126B,NDUFB3,NIF3L1,ORC2,PPIL3"
TCGA.AG.3909.01A	2	201533291	201535336	3	0.0373	NEUTRAL	NA	1	AOX1
TCGA.AA.A01Q.01A	2	201535336	201736071	12	-0.3136	NEUTRAL	NA	4	"AOX1,BZW1,CLK1,PPIL3"
TCGA.AA.A010.01A	2	201677422	201719672	16	0.2633	NEUTRAL	NA	2	"BZW1,CLK1"
TCGA.AG.A023.01A	2	201677880	204231590	350	-0.2818	NEUTRAL	NA	30	"ABI2,ALS2,ALS2CR11,ALS2CR12,BMPR2,BZW1,CARF,CASP10,CASP8,CDK15,CFLAR,CLK1,CYP20A1,FAM117B,FAM126B,FZD7,ICA1L,KIAA2012,MPP4,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,PPIL3,STRADB,SUMO1,TMEM237,TRAK2,WDR12"
TCGA.AG.4009.01A	2	201686784	201822703	39	0.1325	NEUTRAL	NA	5	"BZW1,CLK1,NIF3L1,ORC2,PPIL3"
TCGA.A6.3810.01A	2	201719672	201750362	13	-0.1245	NEUTRAL	NA	2	"CLK1,PPIL3"
TCGA.CK.5914.01A	2	201728774	201888606	40	0.0623	NEUTRAL	NA	5	"CLK1,FAM126B,NIF3L1,ORC2,PPIL3"
TCGA.AG.A00C.01A	2	201741590	201876059	34	-0.0106	NEUTRAL	NA	4	"FAM126B,NIF3L1,ORC2,PPIL3"
TCGA.AA.A01Q.01A	2	201741590	201994540	36	0.1845	NEUTRAL	NA	6	"CFLAR,FAM126B,NDUFB3,NIF3L1,ORC2,PPIL3"
TCGA.AG.3909.01A	2	201746076	201950175	38	0.1567	NEUTRAL	NA	5	"FAM126B,NDUFB3,NIF3L1,ORC2,PPIL3"
TCGA.AA.A00F.01A	2	201747030	201950175	31	0.0157	NEUTRAL	NA	5	"FAM126B,NDUFB3,NIF3L1,ORC2,PPIL3"
TCGA.A6.3810.01A	2	201752236	241079391	3070	0.1902	NEUTRAL	NA	264	Too-Many
TCGA.AA.A00N.01A	2	201753607	201881705	31	0.1953	NEUTRAL	NA	4	"FAM126B,NIF3L1,ORC2,PPIL3"
TCGA.AA.A010.01A	2	201785677	201876059	19	0.1549	NEUTRAL	NA	2	"FAM126B,ORC2"
TCGA.AG.4009.01A	2	201845956	201950175	12	-0.183	NEUTRAL	NA	2	"FAM126B,NDUFB3"
TCGA.AG.A01W.01A	2	201917089	201924234	5	-0.1683	NEUTRAL	NA	1	FAM126B
TCGA.AG.3906.01A	2	202025168	202149487	20	0.2412	NEUTRAL	NA	3	"CASP10,CASP8,CFLAR"
TCGA.AA.A00F.01A	2	202028509	206869065	227	0.0157	NEUTRAL	NA	30	"ABI2,ALS2,ALS2CR11,ALS2CR12,BMPR2,CARF,CASP10,CASP8,CD28,CDK15,CFLAR,CTLA4,CYP20A1,FAM117B,FZD7,ICA1L,ICOS,INO80D,KIAA2012,MPP4,NBEAL1,NOP58,NRP2,PARD3B,RAPH1,STRADB,SUMO1,TMEM237,TRAK2,WDR12"
TCGA.AA.A00N.01A	2	202050464	202122923	11	0.1692	NEUTRAL	NA	2	"CASP10,CASP8"
TCGA.AG.A00C.01A	2	202050464	202163892	23	0.1573	NEUTRAL	NA	3	"ALS2CR12,CASP10,CASP8"
TCGA.AG.3909.01A	2	202050464	202410205	64	0.1148	NEUTRAL	NA	6	"ALS2CR11,ALS2CR12,CASP10,CASP8,STRADB,TRAK2"
TCGA.AG.3891.01A	2	202050464	203130588	163	-0.1087	NEUTRAL	NA	14	"ALS2,ALS2CR11,ALS2CR12,CASP10,CASP8,CDK15,FZD7,KIAA2012,MPP4,NOP58,STRADB,SUMO1,TMEM237,TRAK2"
TCGA.AG.4009.01A	2	202050464	203378405	176	-0.0775	NEUTRAL	NA	15	"ALS2,ALS2CR11,ALS2CR12,BMPR2,CASP10,CASP8,CDK15,FZD7,KIAA2012,MPP4,NOP58,STRADB,SUMO1,TMEM237,TRAK2"
TCGA.AA.A01Q.01A	2	202050464	211452738	496	0.1193	NEUTRAL	NA	61	"ABI2,ACADL,ADAM23,ALS2,ALS2CR11,ALS2CR12,BMPR2,C2orf80,CARF,CASP10,CASP8,CCNYL1,CD28,CDK15,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,CYP20A1,DYTN,EEF1B2,FAM117B,FASTKD2,FZD5,FZD7,GPR1,ICA1L,ICOS,IDH1,INO80D,KANSL1L,KIAA2012,KLF7,LANCL1,LOC200726,MAP2,MDH1B,METTL21A,MPP4,MYL1,NBEAL1,NDUFS1,NOP58,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,RAPH1,RPE,STRADB,SUMO1,TMEM237,TRAK2,UNC80,WDR12,ZDBF2"
TCGA.CM.5868	2	202075980	243048759	12886	-0.0213	NEUTRAL	NA	288	Too-Many
TCGA.SS.A7HO	2	202119271	202254872	31	-0.5046	NEUTRAL	NA	3	"ALS2CR12,CASP8,TRAK2"
TCGA.AA.A01C.01A	2	202131132	202323461	39	0.1228	NEUTRAL	NA	4	"ALS2CR12,CASP8,STRADB,TRAK2"
TCGA.AG.A01W.01A	2	202144853	202177525	7	-0.0336	NEUTRAL	NA	2	"ALS2CR12,CASP8"
TCGA.AG.3906.01A	2	202151180	202412218	47	-0.1212	NEUTRAL	NA	5	"ALS2CR11,ALS2CR12,CASP8,STRADB,TRAK2"
TCGA.AA.A00N.01A	2	202172195	202195119	3	-0.0683	NEUTRAL	NA	1	ALS2CR12
TCGA.AG.A00C.01A	2	202172195	202285087	25	-0.2095	NEUTRAL	NA	2	"ALS2CR12,TRAK2"
TCGA.AG.A01L.01A	2	202207043	220155494	1279	0.1112	NEUTRAL	NA	121	Too-Many
TCGA.AA.3509.01A	2	202215963	202962107	130	0.1149	NEUTRAL	NA	10	"ALS2,ALS2CR11,ALS2CR12,CDK15,FZD7,KIAA2012,MPP4,STRADB,TMEM237,TRAK2"
TCGA.AZ.4684.01A	2	202215963	202962107	130	0.1945	NEUTRAL	NA	10	"ALS2,ALS2CR11,ALS2CR12,CDK15,FZD7,KIAA2012,MPP4,STRADB,TMEM237,TRAK2"
TCGA.AG.A01W.01A	2	202220628	202787278	68	0.2963	NEUTRAL	NA	8	"ALS2,ALS2CR11,ALS2CR12,CDK15,MPP4,STRADB,TMEM237,TRAK2"
TCGA.AA.A010.01A	2	202245267	202262163	10	-0.1463	NEUTRAL	NA	1	TRAK2
TCGA.SS.A7HO	2	202258468	215537550	3800	0.157	NEUTRAL	NA	63	"ABI2,ACADL,ADAM23,ALS2,ALS2CR11,BMPR2,C2orf80,CARF,CCNYL1,CD28,CDK15,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,CYP20A1,DYTN,EEF1B2,ERBB4,FAM117B,FASTKD2,FZD5,FZD7,GPR1,ICA1L,ICOS,IDH1,IKZF2,INO80D,KANSL1L,KIAA2012,KLF7,LANCL1,LOC100130451,LOC200726,MAP2,MDH1B,METTL21A,MPP4,MYL1,NBEAL1,NDUFS1,NOP58,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,RAPH1,RPE,SPAG16,STRADB,SUMO1,TMEM237,TRAK2,UNC80,VWC2L,WDR12,ZDBF2"
TCGA.CK.5914.01A	2	202272089	202446766	24	-0.0696	NEUTRAL	NA	3	"ALS2CR11,STRADB,TRAK2"
TCGA.AA.A00N.01A	2	202285087	202483593	27	-0.4431	NEUTRAL	NA	3	"ALS2CR11,STRADB,TRAK2"
TCGA.AA.A010.01A	2	202319478	202402094	15	-0.2196	NEUTRAL	NA	2	"ALS2CR11,STRADB"
TCGA.AG.A00C.01A	2	202319478	202534407	49	0.238	NEUTRAL	NA	4	"ALS2CR11,MPP4,STRADB,TMEM237"
TCGA.AA.A01C.01A	2	202342768	203139774	106	0.0487	NEUTRAL	NA	10	"ALS2,ALS2CR11,CDK15,FZD7,KIAA2012,MPP4,NOP58,STRADB,SUMO1,TMEM237"
TCGA.AG.3909.01A	2	202412218	202483593	10	-0.4935	NEUTRAL	NA	1	ALS2CR11
TCGA.AA.3982	2	202417022	204798019	449	0.2266	NEUTRAL	NA	20	"ABI2,ALS2,ALS2CR11,BMPR2,CARF,CD28,CDK15,CTLA4,CYP20A1,FAM117B,FZD7,ICA1L,KIAA2012,MPP4,NBEAL1,NOP58,RAPH1,SUMO1,TMEM237,WDR12"
TCGA.AG.3906.01A	2	202446766	202719532	79	-0.0887	NEUTRAL	NA	5	"ALS2,ALS2CR11,CDK15,MPP4,TMEM237"
TCGA.AA.A010.01A	2	202466413	202504618	16	-0.1293	NEUTRAL	NA	2	"ALS2CR11,TMEM237"
TCGA.AA.A010.01A	2	202505530	203332213	122	0.3073	NEUTRAL	NA	9	"ALS2,BMPR2,CDK15,FZD7,KIAA2012,MPP4,NOP58,SUMO1,TMEM237"
TCGA.AA.A00N.01A	2	202520892	202530978	6	-0.2239	NEUTRAL	NA	1	MPP4
TCGA.AG.A00C.01A	2	202539862	203167719	77	-0.1544	NEUTRAL	NA	7	"ALS2,CDK15,FZD7,KIAA2012,MPP4,NOP58,SUMO1"
TCGA.CK.5914.01A	2	202597947	202902199	28	0.2803	NEUTRAL	NA	3	"ALS2,CDK15,FZD7"
TCGA.AA.A00N.01A	2	202614387	202633502	8	-0.0625	NEUTRAL	NA	1	ALS2
TCGA.AG.3906.01A	2	202736944	203378405	31	0.2251	NEUTRAL	NA	6	"BMPR2,CDK15,FZD7,KIAA2012,NOP58,SUMO1"
TCGA.AG.A01W.01A	2	202792962	203093024	24	-0.1781	NEUTRAL	NA	3	"FZD7,KIAA2012,SUMO1"
TCGA.CK.4952.01A	2	202868604	204307700	161	-0.4936	NEUTRAL	NA	13	"ABI2,BMPR2,CARF,CYP20A1,FAM117B,FZD7,ICA1L,KIAA2012,NBEAL1,NOP58,RAPH1,SUMO1,WDR12"
TCGA.AA.A00L.01A	2	202902199	203395467	33	-0.0675	NEUTRAL	NA	5	"BMPR2,FZD7,KIAA2012,NOP58,SUMO1"
TCGA.AA.3509.01A	2	202964295	204255718	167	-0.3792	NEUTRAL	NA	11	"ABI2,BMPR2,CARF,CYP20A1,FAM117B,ICA1L,KIAA2012,NBEAL1,NOP58,SUMO1,WDR12"
TCGA.AZ.4684.01A	2	202964295	204255718	167	-0.2995	NEUTRAL	NA	11	"ABI2,BMPR2,CARF,CYP20A1,FAM117B,ICA1L,KIAA2012,NBEAL1,NOP58,SUMO1,WDR12"
TCGA.AA.A00N.01A	2	202979057	203949144	103	-0.3151	NEUTRAL	NA	9	"BMPR2,CARF,FAM117B,ICA1L,KIAA2012,NBEAL1,NOP58,SUMO1,WDR12"
TCGA.CK.5914.01A	2	202989875	203049425	5	-0.4122	NEUTRAL	NA	1	KIAA2012
TCGA.AG.A01W.01A	2	203103713	208702500	352	0.3161	NEUTRAL	NA	32	"ABI2,ADAM23,BMPR2,CARF,CCNYL1,CD28,CPO,CREB1,CTLA4,CYP20A1,DYTN,EEF1B2,FAM117B,FASTKD2,FZD5,GPR1,ICA1L,ICOS,INO80D,KLF7,LOC200726,MDH1B,METTL21A,NBEAL1,NDUFS1,NOP58,NRP2,PARD3B,PLEKHM3,RAPH1,WDR12,ZDBF2"
TCGA.AA.A01C.01A	2	203142684	203817266	61	-0.3168	NEUTRAL	NA	6	"BMPR2,CARF,FAM117B,ICA1L,NOP58,WDR12"
TCGA.AG.3891.01A	2	203155024	203378405	13	0.1524	NEUTRAL	NA	2	"BMPR2,NOP58"
TCGA.AG.A00C.01A	2	203168038	203772549	45	0.2973	NEUTRAL	NA	5	"BMPR2,FAM117B,ICA1L,NOP58,WDR12"
TCGA.AA.3967.01A	2	203378405	212495139	531	-0.0089	NEUTRAL	NA	48	"ABI2,ACADL,ADAM23,BMPR2,C2orf80,CARF,CCNYL1,CD28,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,CYP20A1,DYTN,EEF1B2,ERBB4,FAM117B,FASTKD2,FZD5,GPR1,ICA1L,ICOS,IDH1,INO80D,KANSL1L,KLF7,LANCL1,LOC200726,MAP2,MDH1B,METTL21A,MYL1,NBEAL1,NDUFS1,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,RAPH1,RPE,UNC80,WDR12,ZDBF2"
TCGA.AA.A00D.01A	2	203379570	203650619	19	0.0767	NEUTRAL	NA	3	"BMPR2,FAM117B,ICA1L"
TCGA.AA.3930.01A	2	203395467	204161144	116	0.0858	NEUTRAL	NA	7	"BMPR2,CARF,CYP20A1,FAM117B,ICA1L,NBEAL1,WDR12"
TCGA.AA.A00L.01A	2	203397260	206610441	107	-0.4209	NEUTRAL	NA	14	"ABI2,BMPR2,CARF,CD28,CTLA4,CYP20A1,FAM117B,ICA1L,ICOS,NBEAL1,NRP2,PARD3B,RAPH1,WDR12"
TCGA.AG.3891.01A	2	203406987	204067366	74	0.0308	NEUTRAL	NA	6	"BMPR2,CARF,FAM117B,ICA1L,NBEAL1,WDR12"
TCGA.AG.3909.01A	2	203417423	203560557	5	0.1027	NEUTRAL	NA	2	"BMPR2,FAM117B"
TCGA.CK.5914.01A	2	203417423	203693523	23	-0.0014	NEUTRAL	NA	3	"BMPR2,FAM117B,ICA1L"
TCGA.AG.3906.01A	2	203424400	204291849	97	0.044	NEUTRAL	NA	8	"ABI2,BMPR2,CARF,CYP20A1,FAM117B,ICA1L,NBEAL1,WDR12"
TCGA.AG.3909.01A	2	203589599	203661551	10	-0.4359	NEUTRAL	NA	2	"FAM117B,ICA1L"
TCGA.AA.A00D.01A	2	203653502	206659457	96	-0.5087	NEUTRAL	NA	12	"ABI2,CARF,CD28,CTLA4,CYP20A1,ICA1L,ICOS,NBEAL1,NRP2,PARD3B,RAPH1,WDR12"
TCGA.AG.4009.01A	2	203661551	204039833	50	-0.0315	NEUTRAL	NA	4	"CARF,ICA1L,NBEAL1,WDR12"
TCGA.AG.3909.01A	2	203676394	203693523	8	0.0371	NEUTRAL	NA	1	ICA1L
TCGA.AA.A010.01A	2	203679375	206590595	167	0.2205	NEUTRAL	NA	12	"ABI2,CARF,CD28,CTLA4,CYP20A1,ICA1L,ICOS,NBEAL1,NRP2,PARD3B,RAPH1,WDR12"
TCGA.A6.6653	2	203734364	234603438	9716	-0.0152	NEUTRAL	NA	200	Too-Many
TCGA.CK.5914.01A	2	203745525	203776079	12	-0.4749	NEUTRAL	NA	1	WDR12
TCGA.AG.A00C.01A	2	203776079	204054967	34	-0.1056	NEUTRAL	NA	3	"CARF,NBEAL1,WDR12"
TCGA.AG.3909.01A	2	203806563	204047955	31	0.3086	NEUTRAL	NA	2	"CARF,NBEAL1"
TCGA.AA.A01C.01A	2	203818711	204003306	15	0.326	NEUTRAL	NA	2	"CARF,NBEAL1"
TCGA.CK.5914.01A	2	203881047	203933059	6	-0.4087	NEUTRAL	NA	1	NBEAL1
TCGA.AA.3939.01A	2	203974831	204013677	19	-0.4524	NEUTRAL	NA	1	NBEAL1
TCGA.AA.A01C.01A	2	204009291	204131190	30	-0.3328	NEUTRAL	NA	2	"CYP20A1,NBEAL1"
TCGA.AA.3939.01A	2	204016148	204161144	34	-0.0673	NEUTRAL	NA	2	"CYP20A1,NBEAL1"
TCGA.AA.A00N.01A	2	204039833	204054967	5	-0.3409	NEUTRAL	NA	1	NBEAL1
TCGA.AA.3660	2	204040205	231643870	8931	-0.0188	NEUTRAL	NA	156	Too-Many
TCGA.AG.4009.01A	2	204045068	204103724	15	-0.4689	NEUTRAL	NA	2	"CYP20A1,NBEAL1"
TCGA.AG.A00C.01A	2	204058481	204291849	32	0.2968	NEUTRAL	NA	3	"ABI2,CYP20A1,NBEAL1"
TCGA.AG.3891.01A	2	204073310	204161442	18	0.3559	NEUTRAL	NA	2	"CYP20A1,NBEAL1"
TCGA.CK.5914.01A	2	204103724	204291849	23	0.1094	NEUTRAL	NA	2	"ABI2,CYP20A1"
TCGA.AG.A008.01A	2	204103724	242440087	2533	0.1222	NEUTRAL	NA	258	Too-Many
TCGA.AG.4009.01A	2	204110493	206587155	76	-0.0234	NEUTRAL	NA	8	"ABI2,CD28,CTLA4,CYP20A1,ICOS,NRP2,PARD3B,RAPH1"
TCGA.AG.3909.01A	2	204131190	204193226	10	0.3289	NEUTRAL	NA	2	"ABI2,CYP20A1"
TCGA.AA.A00N.01A	2	204131190	204255718	13	-0.0036	NEUTRAL	NA	2	"ABI2,CYP20A1"
TCGA.AA.A01C.01A	2	204137346	211444370	387	0.1117	NEUTRAL	NA	41	"ABI2,ACADL,ADAM23,C2orf80,CCNYL1,CD28,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,CYP20A1,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,ICOS,IDH1,INO80D,KANSL1L,KLF7,LANCL1,LOC200726,MAP2,MDH1B,METTL21A,MYL1,NDUFS1,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,RAPH1,RPE,UNC80,ZDBF2"
TCGA.AA.3930.01A	2	204161442	204320112	19	-0.3565	NEUTRAL	NA	3	"ABI2,CYP20A1,RAPH1"
TCGA.AG.3891.01A	2	204193226	209027901	233	-0.1236	NEUTRAL	NA	28	"ABI2,ADAM23,CCNYL1,CD28,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,ICOS,INO80D,KLF7,LOC200726,MDH1B,METTL21A,NDUFS1,NRP2,PARD3B,PLEKHM3,RAPH1,ZDBF2"
TCGA.AG.A023.01A	2	204244894	210658402	322	0.0817	NEUTRAL	NA	34	"ABI2,ADAM23,C2orf80,CCNYL1,CD28,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,ICOS,IDH1,INO80D,KLF7,LOC200726,MAP2,MDH1B,METTL21A,NDUFS1,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,RAPH1,UNC80,ZDBF2"
TCGA.AZ.4684.01A	2	204259371	206628349	72	0.2281	NEUTRAL	NA	7	"ABI2,CD28,CTLA4,ICOS,NRP2,PARD3B,RAPH1"
TCGA.AA.3509.01A	2	204259371	209163337	253	0.0729	NEUTRAL	NA	31	"ABI2,ADAM23,C2orf80,CCNYL1,CD28,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,ICOS,IDH1,INO80D,KLF7,LOC200726,MDH1B,METTL21A,NDUFS1,NRP2,PARD3B,PIKFYVE,PLEKHM3,RAPH1,ZDBF2"
TCGA.AG.A00C.01A	2	204304163	206920905	77	-0.223	NEUTRAL	NA	7	"CD28,CTLA4,ICOS,INO80D,NRP2,PARD3B,RAPH1"
TCGA.A6.3808.01A	2	204309544	207013691	90	0.2511	NEUTRAL	NA	8	"CD28,CTLA4,ICOS,INO80D,NDUFS1,NRP2,PARD3B,RAPH1"
TCGA.AG.3906.01A	2	204313409	208994117	214	0.002	NEUTRAL	NA	25	"ADAM23,CCNYL1,CD28,CPO,CREB1,CRYGC,CRYGD,CTLA4,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,ICOS,INO80D,KLF7,LOC200726,MDH1B,METTL21A,NDUFS1,NRP2,PARD3B,PLEKHM3,RAPH1,ZDBF2"
TCGA.AA.3939.01A	2	204313409	211018181	393	-0.173	NEUTRAL	NA	35	"ADAM23,C2orf80,CCNYL1,CD28,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,ICOS,IDH1,INO80D,KANSL1L,KLF7,LOC200726,MAP2,MDH1B,METTL21A,NDUFS1,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,RAPH1,RPE,UNC80,ZDBF2"
TCGA.AA.3930.01A	2	204322214	204822477	21	0.191	NEUTRAL	NA	4	"CD28,CTLA4,ICOS,RAPH1"
TCGA.EI.6508	2	204421283	243048759	12497	-0.0096	NEUTRAL	NA	265	Too-Many
TCGA.CK.4952.01A	2	204440860	242491101	3037	-0.0956	NEUTRAL	NA	255	Too-Many
TCGA.AG.3883	2	204525773	204630691	31	-0.2779	NEUTRAL	NA	1	CD28
TCGA.AA.3850	2	204528827	204857885	113	0.09135	NEUTRAL	NA	3	"CD28,CTLA4,ICOS"
TCGA.AG.3883	2	204633074	205385321	296	0.352	NEUTRAL	NA	2	"CTLA4,ICOS"
TCGA.AA.3811	2	204798019	205553498	286	-0.0821	NEUTRAL	NA	2	"ICOS,PARD3B"
TCGA.AA.3941	2	204801767	205553498	285	-0.1134	NEUTRAL	NA	2	"ICOS,PARD3B"
TCGA.AA.3982	2	204801767	205553498	285	-0.1933	NEUTRAL	NA	2	"ICOS,PARD3B"
TCGA.AA.3930.01A	2	204824214	206417988	23	-0.2157	NEUTRAL	NA	2	"ICOS,PARD3B"
TCGA.AA.3850	2	204981363	205208479	106	0.17075	NEUTRAL	NA	0	None
TCGA.AA.3850	2	205209448	206343058	417	-0.34395	NEUTRAL	NA	1	PARD3B
TCGA.AG.3883	2	205385337	209318333	1258	0.0085	NEUTRAL	NA	27	"ADAM23,C2orf80,CCNYL1,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,IDH1,INO80D,KLF7,LOC200726,MDH1B,METTL21A,NDUFS1,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,ZDBF2"
TCGA.AA.3982	2	205574897	206461746	339	-0.1748	NEUTRAL	NA	1	PARD3B
TCGA.AA.3941	2	205574897	206474011	341	-0.1653	NEUTRAL	NA	1	PARD3B
TCGA.AA.3811	2	205574897	209484673	1242	0.1004	NEUTRAL	NA	27	"ADAM23,C2orf80,CCNYL1,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,IDH1,INO80D,KLF7,LOC200726,MDH1B,METTL21A,NDUFS1,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,ZDBF2"
TCGA.F4.6460	2	205582869	236400823	10083	-0.2752	NEUTRAL	NA	201	Too-Many
TCGA.AA.3977	2	205646303	218629831	4238	-0.0497	NEUTRAL	NA	54	"ABCA12,ACADL,ADAM23,ATIC,BARD1,C2orf80,CCNYL1,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,EEF1B2,ERBB4,FASTKD2,FN1,FZD5,GPR1,IDH1,IGFBP2,IGFBP5,IKZF2,INO80D,KANSL1L,KLF7,LANCL1,LOC100130451,LOC200726,MAP2,MARCH4,MDH1B,METTL21A,MREG,MYL1,NDUFS1,NRP2,PARD3B,PECR,PIKFYVE,PLEKHM3,PTH2R,RPE,RPL37A,SMARCAL1,SPAG16,TMEM169,TNP1,UNC80,VWC2L,XRCC5,ZDBF2"
TCGA.DM.A28F	2	205775266	206204107	203	-0.0727	NEUTRAL	NA	1	PARD3B
TCGA.D5.6929	2	205844945	206201290	154	-0.3454	NEUTRAL	NA	1	PARD3B
TCGA.EI.6512	2	206122546	243048759	11894	-0.0234	NEUTRAL	NA	262	Too-Many
TCGA.D5.6929	2	206204107	243048759	11835	0.1773	NEUTRAL	NA	262	Too-Many
TCGA.DM.A28F	2	206218160	206263580	26	-0.506	NEUTRAL	NA	1	PARD3B
TCGA.DM.A28F	2	206273703	243048759	11810	0.3424	NEUTRAL	NA	262	Too-Many
TCGA.AA.3850	2	206352139	206474011	45	-0.05495	NEUTRAL	NA	1	PARD3B
TCGA.AG.3727	2	206400521	243048759	11803	0.0098	NEUTRAL	NA	262	Too-Many
TCGA.AA.3529	2	206419017	206433370	13	0.3159	NEUTRAL	NA	1	PARD3B
TCGA.AA.3529	2	206440978	243048759	11768	-0.01	NEUTRAL	NA	262	Too-Many
TCGA.AA.3982	2	206464464	207128290	221	0.223	NEUTRAL	NA	6	"EEF1B2,GPR1,INO80D,NDUFS1,NRP2,PARD3B"
TCGA.AA.3850	2	206476385	207154828	226	0.36245	NEUTRAL	NA	7	"EEF1B2,GPR1,INO80D,NDUFS1,NRP2,PARD3B,ZDBF2"
TCGA.AA.3930.01A	2	206480218	207174411	56	0.1234	NEUTRAL	NA	7	"EEF1B2,GPR1,INO80D,NDUFS1,NRP2,PARD3B,ZDBF2"
TCGA.AA.A00L.01A	2	206614400	207175522	35	-0.0695	NEUTRAL	NA	6	"EEF1B2,GPR1,INO80D,NDUFS1,NRP2,ZDBF2"
TCGA.AZ.4684.01A	2	206630159	207027405	36	-0.2956	NEUTRAL	NA	4	"EEF1B2,INO80D,NDUFS1,NRP2"
TCGA.AG.4009.01A	2	206659457	216262354	493	-0.0744	NEUTRAL	NA	43	"ABCA12,ACADL,ADAM23,ATIC,BARD1,C2orf80,CCNYL1,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,EEF1B2,ERBB4,FASTKD2,FN1,FZD5,GPR1,IDH1,IKZF2,INO80D,KANSL1L,KLF7,LANCL1,LOC100130451,LOC200726,MAP2,MDH1B,METTL21A,MYL1,NDUFS1,NRP2,PIKFYVE,PLEKHM3,PTH2R,RPE,SPAG16,UNC80,VWC2L,ZDBF2"
TCGA.AA.A010.01A	2	206869065	207040864	32	0.2083	NEUTRAL	NA	4	"EEF1B2,GPR1,INO80D,NDUFS1"
TCGA.AA.A00D.01A	2	206869065	207345908	27	0.0318	NEUTRAL	NA	6	"ADAM23,EEF1B2,GPR1,INO80D,NDUFS1,ZDBF2"
TCGA.AA.A00F.01A	2	206920905	207345908	26	0.3274	NEUTRAL	NA	6	"ADAM23,EEF1B2,GPR1,INO80D,NDUFS1,ZDBF2"
TCGA.AG.3909.01A	2	206988854	207024647	17	-0.4054	NEUTRAL	NA	2	"EEF1B2,NDUFS1"
TCGA.CK.5914.01A	2	206988854	207309990	32	-0.1585	NEUTRAL	NA	5	"ADAM23,EEF1B2,GPR1,NDUFS1,ZDBF2"
TCGA.AG.A011.01A	2	207018311	207026784	5	-0.005	NEUTRAL	NA	2	"EEF1B2,NDUFS1"
TCGA.CK.4948.01B	2	207024647	207027405	6	-0.4465	NEUTRAL	NA	1	EEF1B2
TCGA.AZ.4684.01A	2	207040864	209138690	140	0.1515	NEUTRAL	NA	21	"ADAM23,C2orf80,CCNYL1,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,FASTKD2,FZD5,GPR1,IDH1,KLF7,LOC200726,MDH1B,METTL21A,PIKFYVE,PLEKHM3,ZDBF2"
TCGA.AA.A02J.01A	2	207040864	209184934	155	0.0024	NEUTRAL	NA	21	"ADAM23,C2orf80,CCNYL1,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,FASTKD2,FZD5,GPR1,IDH1,KLF7,LOC200726,MDH1B,METTL21A,PIKFYVE,PLEKHM3,ZDBF2"
TCGA.CK.4948.01B	2	207040864	222301735	1205	-0.0285	NEUTRAL	NA	106	Too-Many
TCGA.AA.3982	2	207138478	208497964	402	-0.0415	NEUTRAL	NA	10	"ADAM23,CPO,CREB1,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,METTL21A,ZDBF2"
TCGA.AA.3941	2	207143229	208467996	395	0.0361	NEUTRAL	NA	10	"ADAM23,CPO,CREB1,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,METTL21A,ZDBF2"
TCGA.AA.3850	2	207156381	208050148	274	-0.05385	NEUTRAL	NA	8	"ADAM23,CPO,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,ZDBF2"
TCGA.AG.A00C.01A	2	207161953	207988895	82	-0.2366	NEUTRAL	NA	8	"ADAM23,CPO,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,ZDBF2"
TCGA.AG.A00Y.01A	2	207173780	216913946	484	-0.1247	NEUTRAL	NA	40	"ABCA12,ACADL,ADAM23,ATIC,BARD1,C2orf80,CCNYL1,CPO,CPS1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,ERBB4,FASTKD2,FN1,FZD5,IDH1,IKZF2,KANSL1L,KLF7,LANCL1,LOC100130451,LOC200726,MAP2,MDH1B,METTL21A,MREG,MYL1,PECR,PIKFYVE,PLEKHM3,PTH2R,RPE,SPAG16,UNC80,VWC2L,ZDBF2"
TCGA.AA.3930.01A	2	207174982	208591547	93	-0.1436	NEUTRAL	NA	11	"ADAM23,CCNYL1,CPO,CREB1,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,METTL21A,ZDBF2"
TCGA.AG.A011.01A	2	207309990	208598623	91	-0.0212	NEUTRAL	NA	10	"ADAM23,CCNYL1,CPO,CREB1,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,METTL21A"
TCGA.AA.A00L.01A	2	207309990	210594526	179	-0.465	NEUTRAL	NA	21	"ADAM23,C2orf80,CCNYL1,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,FASTKD2,FZD5,IDH1,KLF7,LOC200726,MAP2,MDH1B,METTL21A,PIKFYVE,PLEKHM3,PTH2R"
TCGA.AH.6549.01A	2	207345908	242842428	2937	-0.0036	NEUTRAL	NA	255	Too-Many
TCGA.AA.A00F.01A	2	207395540	209210752	136	-0.0454	NEUTRAL	NA	19	"ADAM23,C2orf80,CCNYL1,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,DYTN,FASTKD2,FZD5,IDH1,KLF7,LOC200726,MDH1B,METTL21A,PIKFYVE,PLEKHM3"
TCGA.AA.A010.01A	2	207451978	208488904	71	-0.0739	NEUTRAL	NA	9	"ADAM23,CPO,CREB1,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,METTL21A"
TCGA.A6.3808.01A	2	207988460	210642020	133	-0.2852	NEUTRAL	NA	16	"C2orf80,CCNYL1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,FZD5,IDH1,KLF7,MAP2,METTL21A,PIKFYVE,PLEKHM3,PTH2R,UNC80"
TCGA.AG.A00C.01A	2	208030154	209302258	100	0.0562	NEUTRAL	NA	14	"C2orf80,CCNYL1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,FZD5,IDH1,KLF7,METTL21A,PIKFYVE,PLEKHM3,PTH2R"
TCGA.AA.3850	2	208087324	208467996	107	-0.07655	NEUTRAL	NA	2	"CREB1,METTL21A"
TCGA.AG.3909.01A	2	208461591	208631667	14	-0.5028	NEUTRAL	NA	4	"CCNYL1,CREB1,FZD5,METTL21A"
TCGA.CK.5914.01A	2	208461591	209051600	39	0.2899	NEUTRAL	NA	10	"C2orf80,CCNYL1,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,FZD5,METTL21A,PLEKHM3"
TCGA.AA.3850	2	208477851	209189911	200	0.34545	NEUTRAL	NA	11	"C2orf80,CCNYL1,CRYGA,CRYGB,CRYGC,CRYGD,FZD5,IDH1,METTL21A,PIKFYVE,PLEKHM3"
TCGA.AA.3941	2	208477851	209215447	211	0.3774	NEUTRAL	NA	11	"C2orf80,CCNYL1,CRYGA,CRYGB,CRYGC,CRYGD,FZD5,IDH1,METTL21A,PIKFYVE,PLEKHM3"
TCGA.AA.3982	2	208500310	209147047	185	0.2584	NEUTRAL	NA	10	"C2orf80,CCNYL1,CRYGA,CRYGB,CRYGC,CRYGD,FZD5,IDH1,PIKFYVE,PLEKHM3"
TCGA.AA.3930.01A	2	208606900	216182822	380	-0.1565	NEUTRAL	NA	27	"ABCA12,ACADL,ATIC,BARD1,C2orf80,CCNYL1,CPS1,CRYGA,CRYGB,CRYGC,CRYGD,ERBB4,FZD5,IDH1,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MYL1,PIKFYVE,PLEKHM3,PTH2R,RPE,SPAG16,UNC80,VWC2L"
TCGA.AG.3909.01A	2	208632966	208865746	8	0.2932	NEUTRAL	NA	2	"FZD5,PLEKHM3"
TCGA.AA.A00N.01A	2	208692995	209051600	23	0.3471	NEUTRAL	NA	6	"C2orf80,CRYGA,CRYGB,CRYGC,CRYGD,PLEKHM3"
TCGA.AG.A011.01A	2	208692995	242813848	2264	-0.0239	NEUTRAL	NA	244	Too-Many
TCGA.AG.A01W.01A	2	208715581	208757865	11	-0.1289	NEUTRAL	NA	1	PLEKHM3
TCGA.AG.3906.01A	2	209051600	210594865	81	-0.1317	NEUTRAL	NA	5	"C2orf80,IDH1,MAP2,PIKFYVE,PTH2R"
TCGA.CK.5914.01A	2	209101757	209141394	12	-0.4077	NEUTRAL	NA	2	"IDH1,PIKFYVE"
TCGA.AG.3891.01A	2	209101757	216292851	346	-0.2862	NEUTRAL	NA	20	"ABCA12,ACADL,ATIC,BARD1,CPS1,ERBB4,FN1,IDH1,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MYL1,PIKFYVE,PTH2R,RPE,SPAG16,UNC80,VWC2L"
TCGA.AA.3982	2	209147458	209334977	55	-0.1093	NEUTRAL	NA	2	"PIKFYVE,PTH2R"
TCGA.AG.3909.01A	2	209150428	209153401	2	-0.0728	NEUTRAL	NA	1	PIKFYVE
TCGA.AA.A010.01A	2	209150428	209219867	37	-0.2041	NEUTRAL	NA	1	PIKFYVE
TCGA.AG.3909.01A	2	209163337	209195240	16	0.362	NEUTRAL	NA	1	PIKFYVE
TCGA.AA.3850	2	209191760	209368011	57	-0.18045	NEUTRAL	NA	2	"PIKFYVE,PTH2R"
TCGA.AA.A02J.01A	2	209192852	217329255	372	-0.0958	NEUTRAL	NA	25	"ABCA12,ACADL,ATIC,BARD1,CPS1,ERBB4,FN1,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MARCH4,MREG,MYL1,PECR,PIKFYVE,PTH2R,RPE,SMARCAL1,SPAG16,TMEM169,UNC80,VWC2L,XRCC5"
TCGA.AG.3909.01A	2	209198027	209212544	12	-0.0787	NEUTRAL	NA	1	PIKFYVE
TCGA.AA.A00N.01A	2	209200759	209209780	7	-0.2074	NEUTRAL	NA	1	PIKFYVE
TCGA.CK.5914.01A	2	209207227	209212544	4	0.0709	NEUTRAL	NA	1	PIKFYVE
TCGA.AA.3941	2	209219694	209488491	78	-0.1714	NEUTRAL	NA	2	"PIKFYVE,PTH2R"
TCGA.CK.5914.01A	2	209271745	209309431	6	0.1324	NEUTRAL	NA	1	PTH2R
TCGA.AG.3909.01A	2	209271745	210594865	30	0.3183	NEUTRAL	NA	2	"MAP2,PTH2R"
TCGA.AA.A00F.01A	2	209271745	219082130	393	-0.1584	NEUTRAL	NA	33	"ABCA12,ACADL,ARPC2,ATIC,BARD1,CPS1,CXCR1,CXCR2,ERBB4,FN1,IGFBP2,IGFBP5,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MARCH4,MREG,MYL1,PECR,PTH2R,RPE,RPL37A,RUFY4,SMARCAL1,SPAG16,TMEM169,TNP1,TNS1,UNC80,VWC2L,XRCC5"
TCGA.AG.A00C.01A	2	209307042	210993708	54	-0.2279	NEUTRAL	NA	5	"KANSL1L,MAP2,PTH2R,RPE,UNC80"
TCGA.AG.3883	2	209332454	211240482	463	0.1217	NEUTRAL	NA	7	"ACADL,KANSL1L,MAP2,MYL1,PTH2R,RPE,UNC80"
TCGA.AA.3982	2	209338757	215934747	1972	-0.4641	NEUTRAL	NA	16	"ABCA12,ACADL,BARD1,CPS1,ERBB4,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MYL1,PTH2R,RPE,SPAG16,UNC80,VWC2L"
TCGA.AA.3844	2	209368011	215931904	1964	-0.5089	NEUTRAL	NA	15	"ABCA12,ACADL,BARD1,CPS1,ERBB4,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MYL1,RPE,SPAG16,UNC80,VWC2L"
TCGA.AG.3896	2	209467025	243048759	10837	-0.0299	NEUTRAL	NA	235	Too-Many
TCGA.AA.3811	2	209488491	215914733	1920	-0.3156	NEUTRAL	NA	15	"ABCA12,ACADL,BARD1,CPS1,ERBB4,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MYL1,RPE,SPAG16,UNC80,VWC2L"
TCGA.D5.5538	2	209508009	220534467	3420	0.0058	NEUTRAL	NA	83	"AAMP,ABCA12,ABCB6,ACADL,ANKZF1,ARPC2,ASIC4,ATG9A,ATIC,BARD1,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CPS1,CRYBA2,CTDSP1,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,ERBB4,FAM134A,FEV,FN1,GLB1L,GMPPA,GPBAR1,IGFBP2,IGFBP5,IHH,IKZF2,INHA,KANSL1L,LANCL1,LOC100130451,LOC100996693,MAP2,MARCH4,MREG,MYL1,NHEJ1,OBSL1,PECR,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RPE,RPL37A,RQCD1,RUFY4,SLC11A1,SLC23A3,SLC4A3,SMARCAL1,SPAG16,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM169,TMEM198,TNP1,TNS1,TTLL4,TUBA4A,UNC80,USP37,VIL1,VWC2L,WNT10A,WNT6,XRCC5,ZFAND2B,ZNF142"
TCGA.AG.A01W.01A	2	210051597	210128631	15	0.1395	NEUTRAL	NA	0	None
TCGA.G4.6317	2	210451047	210945016	105	-0.0501	NEUTRAL	NA	4	"KANSL1L,MAP2,RPE,UNC80"
TCGA.AA.A010.01A	2	210543248	210636744	18	-0.3877	NEUTRAL	NA	2	"MAP2,UNC80"
TCGA.AG.3906.01A	2	210637741	210685025	7	0.3136	NEUTRAL	NA	1	UNC80
TCGA.CK.5914.01A	2	210637741	210693907	14	-0.0074	NEUTRAL	NA	1	UNC80
TCGA.AG.3909.01A	2	210650750	215674095	159	0.0876	NEUTRAL	NA	13	"ACADL,BARD1,CPS1,ERBB4,IKZF2,KANSL1L,LANCL1,LOC100130451,MYL1,RPE,SPAG16,UNC80,VWC2L"
TCGA.AA.A00L.01A	2	210654216	210837736	13	-0.0186	NEUTRAL	NA	1	UNC80
TCGA.AA.A010.01A	2	210685025	210858758	51	-0.1103	NEUTRAL	NA	1	UNC80
TCGA.CK.5914.01A	2	210849527	211444370	59	0.3364	NEUTRAL	NA	7	"ACADL,CPS1,KANSL1L,LANCL1,MYL1,RPE,UNC80"
TCGA.AG.3906.01A	2	210867334	213921568	121	-0.1367	NEUTRAL	NA	8	"ACADL,CPS1,ERBB4,IKZF2,KANSL1L,LANCL1,MYL1,RPE"
TCGA.AG.A023.01A	2	210867334	219612791	546	0.0285	NEUTRAL	NA	46	"AAMP,ABCA12,ACADL,ARPC2,ATIC,BARD1,BCS1L,CATIP,CPS1,CTDSP1,CXCR1,CXCR2,ERBB4,FN1,GPBAR1,IGFBP2,IGFBP5,IKZF2,KANSL1L,LANCL1,LOC100130451,MARCH4,MREG,MYL1,PECR,PLCD4,PNKD,RNF25,RPE,RPL37A,RQCD1,RUFY4,SLC11A1,SMARCAL1,SPAG16,STK36,TMBIM1,TMEM169,TNP1,TNS1,TTLL4,USP37,VIL1,VWC2L,XRCC5,ZNF142"
TCGA.AA.A00Q.01A	2	210867334	225449617	852	-0.383	NEUTRAL	NA	96	"AAMP,ABCA12,ABCB6,ACADL,ACSL3,ANKZF1,AP1S3,ARPC2,ASIC4,ATG9A,ATIC,BARD1,BCS1L,CATIP,CCDC108,CCDC140,CDK5R2,CHPF,CNPPD1,CPS1,CRYBA2,CTDSP1,CUL3,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,EPHA4,ERBB4,FAM124B,FAM134A,FARSB,FEV,FN1,GLB1L,GMPPA,GPBAR1,IGFBP2,IGFBP5,IHH,IKZF2,INHA,KANSL1L,KCNE4,LANCL1,LOC100130451,LOC100996693,MARCH4,MOGAT1,MREG,MRPL44,MYL1,NHEJ1,OBSL1,PAX3,PECR,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RPE,RPL37A,RQCD1,RUFY4,SCG2,SERPINE2,SGPP2,SLC11A1,SLC23A3,SLC4A3,SMARCAL1,SPAG16,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM169,TMEM198,TNP1,TNS1,TTLL4,TUBA4A,USP37,VIL1,VWC2L,WDFY1,WNT10A,WNT6,XRCC5,ZFAND2B,ZNF142"
TCGA.AA.A00N.01A	2	210887636	210993708	13	0.3577	NEUTRAL	NA	1	KANSL1L
TCGA.AA.A010.01A	2	210905097	210993708	6	-0.1438	NEUTRAL	NA	1	KANSL1L
TCGA.G4.6317	2	211010985	217326878	2063	0.0049	NEUTRAL	NA	20	"ABCA12,ACADL,ATIC,BARD1,CPS1,ERBB4,FN1,IKZF2,KANSL1L,LANCL1,LOC100130451,MARCH4,MREG,MYL1,PECR,SMARCAL1,SPAG16,TMEM169,VWC2L,XRCC5"
TCGA.AG.A00C.01A	2	211018181	211085320	12	0.1749	NEUTRAL	NA	2	"ACADL,KANSL1L"
TCGA.AA.3939.01A	2	211070309	239246952	2166	-0.1632	NEUTRAL	NA	192	Too-Many
TCGA.AA.A010.01A	2	211081052	211441032	24	0.0715	NEUTRAL	NA	4	"ACADL,CPS1,LANCL1,MYL1"
TCGA.AA.A00N.01A	2	211155707	211300056	10	0.3161	NEUTRAL	NA	2	"LANCL1,MYL1"
TCGA.AG.A00C.01A	2	211155707	216002807	173	-0.2859	NEUTRAL	NA	10	"ABCA12,BARD1,CPS1,ERBB4,IKZF2,LANCL1,LOC100130451,MYL1,SPAG16,VWC2L"
TCGA.F5.6811.01A	2	211189363	242491101	2602	0.0123	NEUTRAL	NA	219	Too-Many
TCGA.AG.3883	2	211240499	212578923	459	-0.3271	NEUTRAL	NA	3	"CPS1,ERBB4,LANCL1"
TCGA.AA.A00N.01A	2	211452738	211518686	22	0.0423	NEUTRAL	NA	1	CPS1
TCGA.AA.A01Q.01A	2	211454782	211504655	17	-0.4111	NEUTRAL	NA	1	CPS1
TCGA.CK.5914.01A	2	211481118	211525170	12	-0.3303	NEUTRAL	NA	1	CPS1
TCGA.AA.A010.01A	2	211481118	213921568	52	0.3619	NEUTRAL	NA	3	"CPS1,ERBB4,IKZF2"
TCGA.AA.A01C.01A	2	211502379	220089762	594	0.0066	NEUTRAL	NA	57	"AAMP,ABCA12,ABCB6,ARPC2,ATG9A,ATIC,BARD1,BCS1L,CATIP,CCDC108,CDK5R2,CNPPD1,CPS1,CRYBA2,CTDSP1,CXCR1,CXCR2,CYP27A1,ERBB4,FAM134A,FEV,FN1,GPBAR1,IGFBP2,IGFBP5,IHH,IKZF2,LOC100130451,MARCH4,MREG,NHEJ1,PECR,PLCD4,PNKD,PRKAG3,RNF25,RPL37A,RQCD1,RUFY4,SLC11A1,SLC23A3,SMARCAL1,SPAG16,STK36,TMBIM1,TMEM169,TNP1,TNS1,TTLL4,USP37,VIL1,VWC2L,WNT10A,WNT6,XRCC5,ZFAND2B,ZNF142"
TCGA.AA.A01Q.01A	2	211507200	218669145	250	0.0985	NEUTRAL	NA	21	"ABCA12,ATIC,BARD1,CPS1,ERBB4,FN1,IGFBP2,IGFBP5,IKZF2,LOC100130451,MARCH4,MREG,PECR,RPL37A,SMARCAL1,SPAG16,TMEM169,TNP1,TNS1,VWC2L,XRCC5"
TCGA.CK.5914.01A	2	211527828	212543746	22	0.3347	NEUTRAL	NA	2	"CPS1,ERBB4"
TCGA.AA.3864	2	211879939	215032579	1010	-0.1923	NEUTRAL	NA	4	"ERBB4,IKZF2,LOC100130451,SPAG16"
TCGA.DY.A1DC	2	211989905	213164560	409	0.006	NEUTRAL	NA	1	ERBB4
TCGA.CK.5914.01A	2	212566641	212587081	6	-0.4166	NEUTRAL	NA	1	ERBB4
TCGA.AG.3883	2	212580183	213768621	393	0.1306	NEUTRAL	NA	1	ERBB4
TCGA.DY.A1DC	2	213187202	213987805	299	0.0427	NEUTRAL	NA	2	"ERBB4,IKZF2"
TCGA.AA.3941	2	213187202	215934747	865	-0.5052	NEUTRAL	NA	7	"ABCA12,BARD1,ERBB4,IKZF2,LOC100130451,SPAG16,VWC2L"
TCGA.A6.4107	2	213192231	243048759	9776	0.0426	NEUTRAL	NA	227	Too-Many
TCGA.EI.6506	2	213192231	243048759	9771	-0.0079	NEUTRAL	NA	227	Too-Many
TCGA.EI.6883	2	213192231	243048759	9761	-0.0091	NEUTRAL	NA	227	Too-Many
TCGA.G4.6628	2	213192231	243048759	9763	0.3476	NEUTRAL	NA	227	Too-Many
TCGA.D5.5537	2	213193423	243048759	9761	0.2074	NEUTRAL	NA	227	Too-Many
TCGA.AA.3967.01A	2	213290936	219082130	259	-0.0947	NEUTRAL	NA	24	"ABCA12,ARPC2,ATIC,BARD1,CXCR1,CXCR2,ERBB4,FN1,IGFBP2,IGFBP5,IKZF2,LOC100130451,MARCH4,MREG,PECR,RPL37A,RUFY4,SMARCAL1,SPAG16,TMEM169,TNP1,TNS1,VWC2L,XRCC5"
TCGA.AG.A01W.01A	2	213720646	214062896	12	-0.1857	NEUTRAL	NA	1	IKZF2
TCGA.DY.A1DF	2	213735307	243048759	9605	-0.011	NEUTRAL	NA	226	Too-Many
TCGA.AG.3883	2	213773375	243048759	9590	-0.2431	NEUTRAL	NA	226	Too-Many
TCGA.G4.6626	2	213807629	243048759	9572	-0.0527	NEUTRAL	NA	226	Too-Many
TCGA.DM.A1HB	2	213876249	221890617	2618	-0.0098	NEUTRAL	NA	74	"AAMP,ABCA12,ABCB6,ANKZF1,ARPC2,ASIC4,ATG9A,ATIC,BARD1,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,FN1,GLB1L,GMPPA,GPBAR1,IGFBP2,IGFBP5,IHH,IKZF2,INHA,LOC100130451,LOC100996693,MARCH4,MREG,NHEJ1,OBSL1,PECR,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RPL37A,RQCD1,RUFY4,SLC11A1,SLC23A3,SLC4A3,SMARCAL1,SPAG16,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM169,TMEM198,TNP1,TNS1,TTLL4,TUBA4A,USP37,VIL1,VWC2L,WNT10A,WNT6,XRCC5,ZFAND2B,ZNF142"
TCGA.EI.6513	2	213981975	243048759	9494	-0.0213	NEUTRAL	NA	226	Too-Many
TCGA.DY.A1DC	2	214012292	243048759	9470	-0.0118	NEUTRAL	NA	226	Too-Many
TCGA.AA.A010.01A	2	214149158	215868879	63	0.0317	NEUTRAL	NA	4	"ABCA12,BARD1,SPAG16,VWC2L"
TCGA.AG.3906.01A	2	214160724	219144700	276	0.0261	NEUTRAL	NA	25	"AAMP,ABCA12,ARPC2,ATIC,BARD1,CXCR1,CXCR2,FN1,GPBAR1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,PNKD,RPL37A,RUFY4,SMARCAL1,SPAG16,TMBIM1,TMEM169,TNP1,TNS1,VWC2L,XRCC5"
TCGA.A6.6648	2	214721745	214897079	43	-0.308	NEUTRAL	NA	1	SPAG16
TCGA.A6.6648	2	214897384	227346033	4298	-0.0238	NEUTRAL	NA	89	"AAMP,ABCA12,ABCB6,ACSL3,ANKZF1,AP1S3,ARPC2,ASIC4,ATG9A,ATIC,BARD1,BCS1L,CATIP,CCDC108,CCDC140,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CUL3,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,DOCK10,EPHA4,FAM124B,FAM134A,FARSB,FEV,FN1,GLB1L,GMPPA,GPBAR1,IGFBP2,IGFBP5,IHH,INHA,KCNE4,LOC100996693,MARCH4,MOGAT1,MREG,MRPL44,NHEJ1,NYAP2,OBSL1,PAX3,PECR,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RPL37A,RQCD1,RUFY4,SCG2,SERPINE2,SGPP2,SLC11A1,SLC23A3,SLC4A3,SMARCAL1,SPAG16,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM169,TMEM198,TNP1,TNS1,TTLL4,TUBA4A,USP37,VIL1,VWC2L,WDFY1,WNT10A,WNT6,XRCC5,ZFAND2B,ZNF142"
TCGA.AA.3864	2	215046532	216034382	333	-0.135	NEUTRAL	NA	4	"ABCA12,BARD1,SPAG16,VWC2L"
TCGA.G5.6641	2	215154357	233208987	5915	-0.0819	NEUTRAL	NA	127	Too-Many
TCGA.SS.A7HO	2	215546303	243048759	9059	0.1308	NEUTRAL	NA	222	Too-Many
TCGA.AG.A01W.01A	2	215555106	215967447	66	0.2873	NEUTRAL	NA	2	"ABCA12,BARD1"
TCGA.5M.AATE	2	215722991	243048759	8994	0.237	NEUTRAL	NA	221	Too-Many
TCGA.AA.A010.01A	2	215910521	217069822	103	-0.0249	NEUTRAL	NA	7	"ABCA12,ATIC,FN1,MREG,PECR,TMEM169,XRCC5"
TCGA.AA.3811	2	215917788	216820353	307	0.0722	NEUTRAL	NA	4	"ABCA12,ATIC,FN1,MREG"
TCGA.AA.3850	2	215931904	218271897	920	0.15335	NEUTRAL	NA	13	"ABCA12,ATIC,FN1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,RPL37A,SMARCAL1,TMEM169,TNP1,XRCC5"
TCGA.AA.3844	2	215934747	216823866	302	-0.1645	NEUTRAL	NA	4	"ABCA12,ATIC,FN1,MREG"
TCGA.AA.3941	2	215934978	216230215	81	0.3728	NEUTRAL	NA	3	"ABCA12,ATIC,FN1"
TCGA.AA.3982	2	215934978	243048759	8904	0.0081	NEUTRAL	NA	221	Too-Many
TCGA.AA.3509.01A	2	215976270	219319599	260	-0.002	NEUTRAL	NA	27	"AAMP,ABCA12,ARPC2,ATIC,CATIP,CTDSP1,CXCR1,CXCR2,FN1,GPBAR1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,PNKD,RPL37A,RUFY4,SLC11A1,SMARCAL1,TMBIM1,TMEM169,TNP1,TNS1,USP37,VIL1,XRCC5"
TCGA.AZ.4684.01A	2	215976270	219319599	260	-0.012	NEUTRAL	NA	27	"AAMP,ABCA12,ARPC2,ATIC,CATIP,CTDSP1,CXCR1,CXCR2,FN1,GPBAR1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,PNKD,RPL37A,RUFY4,SLC11A1,SMARCAL1,TMBIM1,TMEM169,TNP1,TNS1,USP37,VIL1,XRCC5"
TCGA.AG.3909.01A	2	216002807	216198026	9	-0.3564	NEUTRAL	NA	2	"ABCA12,ATIC"
TCGA.AA.3864	2	216063137	216352254	99	0.1032	NEUTRAL	NA	2	"ATIC,FN1"
TCGA.AG.A00C.01A	2	216177171	216200736	10	0.3118	NEUTRAL	NA	1	ATIC
TCGA.AA.3930.01A	2	216184325	216191497	4	0.2802	NEUTRAL	NA	1	ATIC
TCGA.AA.3930.01A	2	216197068	216214252	9	-0.0892	NEUTRAL	NA	1	ATIC
TCGA.AG.3909.01A	2	216199585	216213767	6	0.2056	NEUTRAL	NA	1	ATIC
TCGA.AG.A00C.01A	2	216203453	217341780	103	-0.1713	NEUTRAL	NA	8	"ATIC,FN1,MARCH4,MREG,PECR,SMARCAL1,TMEM169,XRCC5"
TCGA.AA.3930.01A	2	216226215	216242845	12	0.2327	NEUTRAL	NA	1	FN1
TCGA.AA.3941	2	216232107	216776869	206	-0.0021	NEUTRAL	NA	1	FN1
TCGA.AA.3930.01A	2	216243806	216285347	23	-0.1153	NEUTRAL	NA	1	FN1
TCGA.AG.4009.01A	2	216263947	216286787	11	-0.401	NEUTRAL	NA	1	FN1
TCGA.AG.3909.01A	2	216279490	216299382	12	-0.2364	NEUTRAL	NA	1	FN1
TCGA.AA.3930.01A	2	216286787	219206663	157	0.2288	NEUTRAL	NA	20	"AAMP,ARPC2,CXCR1,CXCR2,FN1,GPBAR1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,PNKD,RPL37A,RUFY4,SMARCAL1,TMBIM1,TMEM169,TNP1,TNS1,XRCC5"
TCGA.AA.A02H.01A	2	216292851	219538553	256	-0.2067	NEUTRAL	NA	31	"AAMP,ARPC2,BCS1L,CATIP,CTDSP1,CXCR1,CXCR2,FN1,GPBAR1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,PLCD4,PNKD,RNF25,RPL37A,RQCD1,RUFY4,SLC11A1,SMARCAL1,STK36,TMBIM1,TMEM169,TNP1,TNS1,USP37,VIL1,XRCC5,ZNF142"
TCGA.AG.3891.01A	2	216295390	219146614	144	-0.0133	NEUTRAL	NA	20	"AAMP,ARPC2,CXCR1,CXCR2,FN1,GPBAR1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,PNKD,RPL37A,RUFY4,SMARCAL1,TMBIM1,TMEM169,TNP1,TNS1,XRCC5"
TCGA.AA.A02K.01A	2	216295391	220466349	587	0.1692	NEUTRAL	NA	66	"AAMP,ABCB6,ANKZF1,ARPC2,ASIC4,ATG9A,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,FN1,GLB1L,GMPPA,GPBAR1,IGFBP2,IGFBP5,IHH,INHA,LOC100996693,MARCH4,MREG,NHEJ1,OBSL1,PECR,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RPL37A,RQCD1,RUFY4,SLC11A1,SLC23A3,SMARCAL1,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM169,TMEM198,TNP1,TNS1,TTLL4,TUBA4A,USP37,VIL1,WNT10A,WNT6,XRCC5,ZFAND2B,ZNF142"
TCGA.AA.A00N.01A	2	216300326	216995559	25	0.0952	NEUTRAL	NA	5	"FN1,MREG,PECR,TMEM169,XRCC5"
TCGA.AG.4009.01A	2	216300326	218669145	69	0.0951	NEUTRAL	NA	12	"FN1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,RPL37A,SMARCAL1,TMEM169,TNP1,TNS1,XRCC5"
TCGA.AG.3909.01A	2	216300326	218712506	86	0.3111	NEUTRAL	NA	12	"FN1,IGFBP2,IGFBP5,MARCH4,MREG,PECR,RPL37A,SMARCAL1,TMEM169,TNP1,TNS1,XRCC5"
TCGA.AA.3864	2	216361292	243048759	8773	0.0845	NEUTRAL	NA	218	Too-Many
TCGA.AG.A01W.01A	2	216622185	216993238	37	0.1322	NEUTRAL	NA	4	"MREG,PECR,TMEM169,XRCC5"
TCGA.AA.3841	2	216636518	243048759	8688	0.0384	NEUTRAL	NA	218	Too-Many
TCGA.AA.3941	2	216779024	217759515	405	0.3707	NEUTRAL	NA	10	"IGFBP2,IGFBP5,MARCH4,MREG,PECR,RPL37A,SMARCAL1,TMEM169,TNP1,XRCC5"
TCGA.AA.3811	2	216823327	217753979	391	0.3493	NEUTRAL	NA	10	"IGFBP2,IGFBP5,MARCH4,MREG,PECR,RPL37A,SMARCAL1,TMEM169,TNP1,XRCC5"
TCGA.AA.3844	2	216831097	217011611	66	0.0986	NEUTRAL	NA	4	"MREG,PECR,TMEM169,XRCC5"
TCGA.AG.3611.01A	2	216903943	232209648	841	-0.3308	NEUTRAL	NA	111	Too-Many
TCGA.AG.A00Y.01A	2	216916123	220506315	575	0.3457	NEUTRAL	NA	65	"AAMP,ABCB6,ANKZF1,ARPC2,ASIC4,ATG9A,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,GLB1L,GMPPA,GPBAR1,IGFBP2,IGFBP5,IHH,INHA,LOC100996693,MARCH4,NHEJ1,OBSL1,PECR,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RPL37A,RQCD1,RUFY4,SLC11A1,SLC23A3,SLC4A3,SMARCAL1,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM169,TMEM198,TNP1,TNS1,TTLL4,TUBA4A,USP37,VIL1,WNT10A,WNT6,XRCC5,ZFAND2B,ZNF142"
TCGA.AG.A01W.01A	2	217019955	217432550	19	0.1751	NEUTRAL	NA	4	"MARCH4,RPL37A,SMARCAL1,XRCC5"
TCGA.AA.3844	2	217024341	218662026	722	-0.0621	NEUTRAL	NA	7	"IGFBP2,IGFBP5,MARCH4,RPL37A,SMARCAL1,TNP1,XRCC5"
TCGA.AA.A00L.01A	2	217329255	219257663	110	-0.2617	NEUTRAL	NA	16	"AAMP,ARPC2,CATIP,CXCR1,CXCR2,GPBAR1,IGFBP2,IGFBP5,PNKD,RPL37A,RUFY4,SLC11A1,SMARCAL1,TMBIM1,TNP1,TNS1"
TCGA.AA.A02J.01A	2	217341780	219677600	232	-0.0368	NEUTRAL	NA	27	"AAMP,ARPC2,BCS1L,CATIP,CTDSP1,CXCR1,CXCR2,CYP27A1,GPBAR1,IGFBP2,IGFBP5,PLCD4,PNKD,RNF25,RPL37A,RQCD1,RUFY4,SLC11A1,SMARCAL1,STK36,TMBIM1,TNP1,TNS1,TTLL4,USP37,VIL1,ZNF142"
TCGA.AA.A00N.01A	2	217342878	217363498	3	-0.3771	NEUTRAL	NA	1	SMARCAL1
TCGA.AG.A00C.01A	2	217342878	217526552	8	0.3262	NEUTRAL	NA	3	"IGFBP2,RPL37A,SMARCAL1"
TCGA.G4.6322	2	217352252	225687001	2880	-0.0026	NEUTRAL	NA	76	"AAMP,ABCB6,ACSL3,ANKZF1,AP1S3,ARPC2,ASIC4,ATG9A,BCS1L,CATIP,CCDC108,CCDC140,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CUL3,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,DOCK10,EPHA4,FAM124B,FAM134A,FARSB,FEV,GLB1L,GMPPA,GPBAR1,IGFBP2,IGFBP5,IHH,INHA,KCNE4,LOC100996693,MOGAT1,MRPL44,NHEJ1,OBSL1,PAX3,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RPL37A,RQCD1,RUFY4,SCG2,SERPINE2,SGPP2,SLC11A1,SLC23A3,SLC4A3,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM198,TNP1,TNS1,TTLL4,TUBA4A,USP37,VIL1,WDFY1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AD.6901	2	217477429	243048759	8341	-0.0017	NEUTRAL	NA	211	Too-Many
TCGA.AG.A00C.01A	2	217528626	219137263	68	-0.1292	NEUTRAL	NA	11	"AAMP,ARPC2,CXCR1,CXCR2,GPBAR1,IGFBP2,IGFBP5,PNKD,RUFY4,TNP1,TNS1"
TCGA.AA.3811	2	217755069	218437452	310	-0.0209	NEUTRAL	NA	0	None
TCGA.AA.3941	2	217760595	218625580	391	0.0417	NEUTRAL	NA	0	None
TCGA.AA.3850	2	218275817	218399033	67	-0.37525	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	218377381	218459476	24	-0.2298	NEUTRAL	NA	0	None
TCGA.AA.3850	2	218400092	220781005	625	0.30645	NEUTRAL	NA	56	"AAMP,ABCB6,ANKZF1,ARPC2,ASIC4,ATG9A,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,GLB1L,GMPPA,GPBAR1,IHH,INHA,LOC100996693,NHEJ1,OBSL1,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RQCD1,RUFY4,SLC11A1,SLC23A3,SLC4A3,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM198,TNS1,TTLL4,TUBA4A,USP37,VIL1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AA.3811	2	218438842	218629274	86	0.3163	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	218463876	218470715	5	0.3292	NEUTRAL	NA	0	None
TCGA.G4.6317	2	218605497	243048759	7858	0.016	NEUTRAL	NA	208	Too-Many
TCGA.AG.A01W.01A	2	218643540	218646162	4	-0.439	NEUTRAL	NA	0	None
TCGA.AA.3530	2	218647121	234950030	5151	0.0697	NEUTRAL	NA	144	Too-Many
TCGA.AA.3977	2	218647121	243048759	7813	0.0924	NEUTRAL	NA	208	Too-Many
TCGA.AG.A01W.01A	2	218662189	218940360	56	-0.0523	NEUTRAL	NA	2	"RUFY4,TNS1"
TCGA.AA.3844	2	218663978	218947514	87	0.2554	NEUTRAL	NA	2	"RUFY4,TNS1"
TCGA.AG.A014.01A	2	218669145	218938483	31	-0.2907	NEUTRAL	NA	2	"RUFY4,TNS1"
TCGA.A6.3808.01A	2	218938048	219825311	234	-0.0338	NEUTRAL	NA	25	"AAMP,ARPC2,BCS1L,CATIP,CDK5R2,CTDSP1,CXCR1,CXCR2,CYP27A1,GPBAR1,PLCD4,PNKD,PRKAG3,RNF25,RQCD1,RUFY4,SLC11A1,STK36,TMBIM1,TTLL4,USP37,VIL1,WNT10A,WNT6,ZNF142"
TCGA.AG.A014.01A	2	218939796	242813848	1797	-0.0202	NEUTRAL	NA	207	Too-Many
TCGA.AG.A01W.01A	2	218940650	218965899	12	-0.4529	NEUTRAL	NA	1	RUFY4
TCGA.AG.4009.01A	2	218947781	219132165	25	0.256	NEUTRAL	NA	6	"AAMP,ARPC2,CXCR1,CXCR2,GPBAR1,RUFY4"
TCGA.AG.A015.01A	2	218954627	219118545	15	-0.4065	NEUTRAL	NA	4	"ARPC2,CXCR1,CXCR2,RUFY4"
TCGA.AG.A01W.01A	2	218996683	219013638	15	-0.468	NEUTRAL	NA	1	CXCR2
TCGA.AA.3844	2	219008391	220458204	293	0.2806	NEUTRAL	NA	51	"AAMP,ABCB6,ANKZF1,ARPC2,ASIC4,ATG9A,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CXCR1,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,GLB1L,GMPPA,GPBAR1,IHH,INHA,LOC100996693,NHEJ1,OBSL1,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RQCD1,SLC11A1,SLC23A3,SPEG,STK16,STK36,TMBIM1,TMEM198,TTLL4,TUBA4A,USP37,VIL1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AG.A01W.01A	2	219022151	219054990	11	0.2479	NEUTRAL	NA	1	CXCR1
TCGA.AG.A01W.01A	2	219058626	219107529	8	-0.1664	NEUTRAL	NA	1	ARPC2
TCGA.AG.3909.01A	2	219082130	219268973	65	-0.2623	NEUTRAL	NA	8	"AAMP,ARPC2,CATIP,CTDSP1,GPBAR1,PNKD,SLC11A1,TMBIM1"
TCGA.CK.5914.01A	2	219090559	219104064	5	-0.0473	NEUTRAL	NA	1	ARPC2
TCGA.AA.A01Q.01A	2	219090559	219135192	20	-0.0853	NEUTRAL	NA	4	"AAMP,ARPC2,GPBAR1,PNKD"
TCGA.AA.A010.01A	2	219090559	219137263	22	0.1233	NEUTRAL	NA	4	"AAMP,ARPC2,GPBAR1,PNKD"
TCGA.AA.A00N.01A	2	219090559	219268973	68	-0.4981	NEUTRAL	NA	8	"AAMP,ARPC2,CATIP,CTDSP1,GPBAR1,PNKD,SLC11A1,TMBIM1"
TCGA.AA.A00F.01A	2	219090559	219294333	70	0.1427	NEUTRAL	NA	9	"AAMP,ARPC2,CATIP,CTDSP1,GPBAR1,PNKD,SLC11A1,TMBIM1,VIL1"
TCGA.AA.3967.01A	2	219090559	220077659	291	0.2895	NEUTRAL	NA	32	"AAMP,ABCB6,ARPC2,BCS1L,CATIP,CCDC108,CDK5R2,CNPPD1,CRYBA2,CTDSP1,CYP27A1,FAM134A,FEV,GPBAR1,IHH,NHEJ1,PLCD4,PNKD,PRKAG3,RNF25,RQCD1,SLC11A1,SLC23A3,STK36,TMBIM1,TTLL4,USP37,VIL1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AG.A01W.01A	2	219119130	219167024	13	0.2496	NEUTRAL	NA	4	"AAMP,GPBAR1,PNKD,TMBIM1"
TCGA.AG.A015.01A	2	219127489	219205382	22	0.0669	NEUTRAL	NA	4	"AAMP,GPBAR1,PNKD,TMBIM1"
TCGA.CK.5914.01A	2	219127489	219268973	58	0.0039	NEUTRAL	NA	7	"AAMP,CATIP,CTDSP1,GPBAR1,PNKD,SLC11A1,TMBIM1"
TCGA.AG.4009.01A	2	219134083	219268973	45	-0.2883	NEUTRAL	NA	6	"AAMP,CATIP,CTDSP1,PNKD,SLC11A1,TMBIM1"
TCGA.AA.A029.01A	2	219134680	242813848	1685	-0.2001	NEUTRAL	NA	202	Too-Many
TCGA.AG.A00C.01A	2	219140197	219255876	32	0.3662	NEUTRAL	NA	4	"CATIP,PNKD,SLC11A1,TMBIM1"
TCGA.AA.A010.01A	2	219140197	219288937	48	-0.4156	NEUTRAL	NA	6	"CATIP,CTDSP1,PNKD,SLC11A1,TMBIM1,VIL1"
TCGA.AG.A01W.01A	2	219188627	219211259	14	-0.3663	NEUTRAL	NA	1	PNKD
TCGA.AA.A01Q.01A	2	219204459	219268973	36	-0.1752	NEUTRAL	NA	4	"CATIP,CTDSP1,PNKD,SLC11A1"
TCGA.AG.3891.01A	2	219204459	219399285	69	0.3522	NEUTRAL	NA	6	"CATIP,CTDSP1,PNKD,SLC11A1,USP37,VIL1"
TCGA.AG.A015.01A	2	219206663	219222210	6	-0.3009	NEUTRAL	NA	2	"CATIP,PNKD"
TCGA.AG.A01W.01A	2	219213591	219248959	24	0.2763	NEUTRAL	NA	2	"CATIP,SLC11A1"
TCGA.AA.3815.01A	2	219229299	220437059	442	0.09	NEUTRAL	NA	45	"ABCB6,ANKZF1,ASIC4,ATG9A,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,GLB1L,GMPPA,IHH,INHA,LOC100996693,NHEJ1,OBSL1,PLCD4,PRKAG3,PTPRN,RESP18,RNF25,RQCD1,SLC11A1,SLC23A3,SPEG,STK16,STK36,TMEM198,TTLL4,TUBA4A,USP37,VIL1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AA.3930.01A	2	219257663	219268973	9	-0.0339	NEUTRAL	NA	2	"CTDSP1,SLC11A1"
TCGA.AG.3906.01A	2	219257663	219691943	144	0.1552	NEUTRAL	NA	13	"BCS1L,CTDSP1,CYP27A1,PLCD4,PRKAG3,RNF25,RQCD1,SLC11A1,STK36,TTLL4,USP37,VIL1,ZNF142"
TCGA.AG.A00C.01A	2	219257663	219903050	186	-0.031	NEUTRAL	NA	19	"BCS1L,CCDC108,CDK5R2,CRYBA2,CTDSP1,CYP27A1,FEV,PLCD4,PRKAG3,RNF25,RQCD1,SLC11A1,STK36,TTLL4,USP37,VIL1,WNT10A,WNT6,ZNF142"
TCGA.AG.A01W.01A	2	219258011	219319072	22	0.2334	NEUTRAL	NA	4	"CTDSP1,SLC11A1,USP37,VIL1"
TCGA.AA.3867	2	219286540	229318576	3297	0.1731	NEUTRAL	NA	73	"ABCB6,ACSL3,AGFG1,ANKZF1,AP1S3,ASIC4,ATG9A,BCS1L,C2orf83,CCDC108,CCDC140,CCL20,CDK5R2,CHPF,CNPPD1,COL4A3,COL4A4,CRYBA2,CUL3,CYP27A1,DAW1,DES,DNAJB2,DNPEP,DOCK10,EPHA4,FAM124B,FAM134A,FARSB,FEV,GLB1L,GMPPA,IHH,INHA,IRS1,KCNE4,LOC100996693,MFF,MOGAT1,MRPL44,NHEJ1,NYAP2,OBSL1,PAX3,PLCD4,PRKAG3,PTPRN,RESP18,RHBDD1,RNF25,RQCD1,SCG2,SERPINE2,SGPP2,SLC19A3,SLC23A3,SLC4A3,SPEG,SPHKAP,STK11IP,STK16,STK36,TM4SF20,TMEM198,TTLL4,TUBA4A,USP37,VIL1,WDFY1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AG.A015.01A	2	219288452	219503040	62	-0.2341	NEUTRAL	NA	5	"PLCD4,RQCD1,USP37,VIL1,ZNF142"
TCGA.AA.A01Q.01A	2	219288452	219513741	51	0.3726	NEUTRAL	NA	5	"PLCD4,RQCD1,USP37,VIL1,ZNF142"
TCGA.AA.A00L.01A	2	219288452	219545275	71	-0.2487	NEUTRAL	NA	8	"BCS1L,PLCD4,RNF25,RQCD1,STK36,USP37,VIL1,ZNF142"
TCGA.AG.4009.01A	2	219288452	219695977	142	0.1774	NEUTRAL	NA	11	"BCS1L,CYP27A1,PLCD4,PRKAG3,RNF25,RQCD1,STK36,TTLL4,USP37,VIL1,ZNF142"
TCGA.AA.A024.01A	2	219288452	242813848	1795	0.0594	NEUTRAL	NA	196	Too-Many
TCGA.AA.A00F.01A	2	219294544	219305393	10	-0.3639	NEUTRAL	NA	1	VIL1
TCGA.AA.3930.01A	2	219303328	219826321	141	0.1868	NEUTRAL	NA	14	"BCS1L,CDK5R2,CYP27A1,PLCD4,PRKAG3,RNF25,RQCD1,STK36,TTLL4,USP37,VIL1,WNT10A,WNT6,ZNF142"
TCGA.AA.A00N.01A	2	219305393	219566551	92	0.3097	NEUTRAL	NA	8	"BCS1L,PLCD4,RNF25,RQCD1,STK36,USP37,VIL1,ZNF142"
TCGA.AA.A00F.01A	2	219313906	231191903	567	0.0017	NEUTRAL	NA	81	"ABCB6,ACSL3,AGFG1,ANKZF1,AP1S3,ASIC4,ATG9A,BCS1L,C2orf83,CCDC108,CCDC140,CCL20,CDK5R2,CHPF,CNPPD1,COL4A3,COL4A4,CRYBA2,CUL3,CYP27A1,DAW1,DES,DNAJB2,DNER,DNPEP,DOCK10,EPHA4,FAM124B,FAM134A,FARSB,FBXO36,FEV,GLB1L,GMPPA,IHH,INHA,IRS1,KCNE4,LOC100996693,MFF,MOGAT1,MRPL44,NHEJ1,NYAP2,OBSL1,PAX3,PID1,PLCD4,PRKAG3,PTPRN,RESP18,RHBDD1,RNF25,RQCD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC23A3,SLC4A3,SP110,SP140,SP140L,SPEG,SPHKAP,STK11IP,STK16,STK36,TM4SF20,TMEM198,TRIP12,TTLL4,TUBA4A,USP37,VIL1,WDFY1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AG.A01W.01A	2	219319924	219387882	18	-0.1648	NEUTRAL	NA	1	USP37
TCGA.CK.5914.01A	2	219330736	219456980	24	0.201	NEUTRAL	NA	2	"RQCD1,USP37"
TCGA.AG.3909.01A	2	219374655	219457288	15	0.0905	NEUTRAL	NA	2	"RQCD1,USP37"
TCGA.AG.A01W.01A	2	219396680	219803198	113	0.3201	NEUTRAL	NA	12	"BCS1L,CYP27A1,PLCD4,PRKAG3,RNF25,RQCD1,STK36,TTLL4,USP37,WNT10A,WNT6,ZNF142"
TCGA.AG.3891.01A	2	219410891	219871122	126	0.0554	NEUTRAL	NA	16	"BCS1L,CCDC108,CDK5R2,CRYBA2,CYP27A1,FEV,PLCD4,PRKAG3,RNF25,RQCD1,STK36,TTLL4,USP37,WNT10A,WNT6,ZNF142"
TCGA.AA.3509.01A	2	219418228	238722190	1622	-0.029	NEUTRAL	NA	146	Too-Many
TCGA.AZ.4684.01A	2	219418228	238722190	1622	0.002	NEUTRAL	NA	146	Too-Many
TCGA.CK.5914.01A	2	219496807	219533285	26	0.311	NEUTRAL	NA	4	"BCS1L,PLCD4,RNF25,ZNF142"
TCGA.AG.3882	2	219500045	243048759	7650	0.0369	NEUTRAL	NA	193	Too-Many
TCGA.AG.3909.01A	2	219510844	219533285	16	-0.0263	NEUTRAL	NA	3	"BCS1L,RNF25,ZNF142"
TCGA.AG.A015.01A	2	219515045	220108163	184	-0.2245	NEUTRAL	NA	23	"ABCB6,ANKZF1,ATG9A,BCS1L,CCDC108,CDK5R2,CNPPD1,CRYBA2,CYP27A1,FAM134A,FEV,GLB1L,IHH,NHEJ1,PRKAG3,RNF25,SLC23A3,STK36,TTLL4,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AA.A01Q.01A	2	219525729	219540705	17	-0.1478	NEUTRAL	NA	3	"BCS1L,RNF25,STK36"
TCGA.AG.3909.01A	2	219536593	219566551	26	0.3598	NEUTRAL	NA	2	"RNF25,STK36"
TCGA.AA.A010.01A	2	219538326	219679585	49	0.2359	NEUTRAL	NA	3	"CYP27A1,STK36,TTLL4"
TCGA.AA.A01Q.01A	2	219543850	219724713	57	0.3694	NEUTRAL	NA	5	"CYP27A1,PRKAG3,STK36,TTLL4,WNT6"
TCGA.AA.A00O.01A	2	219549766	220075385	118	-0.2379	NEUTRAL	NA	17	"ABCB6,CCDC108,CDK5R2,CNPPD1,CRYBA2,CYP27A1,FAM134A,FEV,IHH,NHEJ1,PRKAG3,SLC23A3,STK36,TTLL4,WNT10A,WNT6,ZFAND2B"
TCGA.AA.A02H.01A	2	219553368	219611726	23	0.3089	NEUTRAL	NA	2	"STK36,TTLL4"
TCGA.AA.A00L.01A	2	219602361	220041420	98	-0.38	NEUTRAL	NA	13	"CCDC108,CDK5R2,CNPPD1,CRYBA2,CYP27A1,FEV,IHH,NHEJ1,PRKAG3,SLC23A3,TTLL4,WNT10A,WNT6"
TCGA.AA.A02H.01A	2	219612268	219677600	14	-0.2014	NEUTRAL	NA	2	"CYP27A1,TTLL4"
TCGA.AG.A023.01A	2	219613512	220497956	268	-0.3617	NEUTRAL	NA	36	"ABCB6,ANKZF1,ASIC4,ATG9A,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,GLB1L,GMPPA,IHH,INHA,LOC100996693,NHEJ1,OBSL1,PRKAG3,PTPRN,RESP18,SLC23A3,SLC4A3,SPEG,STK11IP,STK16,TMEM198,TTLL4,TUBA4A,WNT10A,WNT6,ZFAND2B"
TCGA.AA.A02H.01A	2	219678706	219695977	13	0.3293	NEUTRAL	NA	2	"CYP27A1,PRKAG3"
TCGA.AA.A02J.01A	2	219679585	242276760	1415	-0.0984	NEUTRAL	NA	175	Too-Many
TCGA.CK.5914.01A	2	219691624	219724713	10	0.3194	NEUTRAL	NA	2	"PRKAG3,WNT6"
TCGA.CK.5914.01A	2	219735702	219874625	26	-0.2504	NEUTRAL	NA	6	"CCDC108,CDK5R2,CRYBA2,FEV,WNT10A,WNT6"
TCGA.AA.A02H.01A	2	219735702	219875230	12	-0.291	NEUTRAL	NA	6	"CCDC108,CDK5R2,CRYBA2,FEV,WNT10A,WNT6"
TCGA.AG.3909.01A	2	219735702	219922138	43	-0.0708	NEUTRAL	NA	7	"CCDC108,CDK5R2,CRYBA2,FEV,IHH,WNT10A,WNT6"
TCGA.AA.A01Q.01A	2	219735702	220100409	98	-0.2833	NEUTRAL	NA	15	"ABCB6,ANKZF1,ATG9A,CCDC108,CDK5R2,CNPPD1,CRYBA2,FAM134A,FEV,IHH,NHEJ1,SLC23A3,WNT10A,WNT6,ZFAND2B"
TCGA.AG.A01W.01A	2	219804858	219815694	16	-0.453	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	219816108	219818908	3	0.0265	NEUTRAL	NA	0	None
TCGA.AG.3906.01A	2	219846348	219870696	8	0.041	NEUTRAL	NA	3	"CCDC108,CRYBA2,FEV"
TCGA.AG.A01W.01A	2	219854624	219864374	9	0.2336	NEUTRAL	NA	1	CRYBA2
TCGA.AA.3930.01A	2	219856776	219871122	7	-0.0278	NEUTRAL	NA	2	"CCDC108,CRYBA2"
TCGA.AG.3906.01A	2	219871122	219892876	16	-0.4729	NEUTRAL	NA	1	CCDC108
TCGA.AA.A02H.01A	2	219877971	219895791	13	0.3458	NEUTRAL	NA	1	CCDC108
TCGA.AG.4009.01A	2	219878542	220028093	31	-0.0348	NEUTRAL	NA	4	"CCDC108,IHH,NHEJ1,SLC23A3"
TCGA.AA.A00N.01A	2	219883667	219897152	16	0.3733	NEUTRAL	NA	1	CCDC108
TCGA.AG.3891.01A	2	219884177	220075385	58	-0.0526	NEUTRAL	NA	8	"ABCB6,CCDC108,CNPPD1,FAM134A,IHH,NHEJ1,SLC23A3,ZFAND2B"
TCGA.AA.3930.01A	2	219885836	227922127	510	0.1113	NEUTRAL	NA	48	"ABCB6,ACSL3,ANKZF1,AP1S3,ASIC4,ATG9A,CCDC108,CCDC140,CHPF,CNPPD1,COL4A4,CUL3,DES,DNAJB2,DNPEP,DOCK10,EPHA4,FAM124B,FAM134A,FARSB,GLB1L,GMPPA,IHH,INHA,IRS1,KCNE4,LOC100996693,MOGAT1,MRPL44,NHEJ1,NYAP2,OBSL1,PAX3,PTPRN,RESP18,RHBDD1,SCG2,SERPINE2,SGPP2,SLC23A3,SLC4A3,SPEG,STK11IP,STK16,TMEM198,TUBA4A,WDFY1,ZFAND2B"
TCGA.A6.3808.01A	2	219892876	220071639	49	-0.4045	NEUTRAL	NA	7	"CCDC108,CNPPD1,FAM134A,IHH,NHEJ1,SLC23A3,ZFAND2B"
TCGA.AG.3906.01A	2	219894090	220090102	67	0.2844	NEUTRAL	NA	9	"ABCB6,ATG9A,CCDC108,CNPPD1,FAM134A,IHH,NHEJ1,SLC23A3,ZFAND2B"
TCGA.AA.A02H.01A	2	219896213	220094928	60	-0.353	NEUTRAL	NA	10	"ABCB6,ANKZF1,ATG9A,CCDC108,CNPPD1,FAM134A,IHH,NHEJ1,SLC23A3,ZFAND2B"
TCGA.CK.5914.01A	2	219900052	220071639	42	-0.1645	NEUTRAL	NA	7	"CCDC108,CNPPD1,FAM134A,IHH,NHEJ1,SLC23A3,ZFAND2B"
TCGA.AG.A01W.01A	2	219900410	219947815	8	-0.1485	NEUTRAL	NA	3	"CCDC108,IHH,NHEJ1"
TCGA.AG.A00C.01A	2	219903601	220439459	201	0.2996	NEUTRAL	NA	26	"ABCB6,ANKZF1,ASIC4,ATG9A,CCDC108,CHPF,CNPPD1,DES,DNAJB2,DNPEP,FAM134A,GLB1L,GMPPA,IHH,INHA,LOC100996693,NHEJ1,OBSL1,PTPRN,RESP18,SLC23A3,SPEG,STK16,TMEM198,TUBA4A,ZFAND2B"
TCGA.AG.A02X.01A	2	220022166	220077061	33	-0.2479	NEUTRAL	NA	6	"ABCB6,CNPPD1,FAM134A,NHEJ1,SLC23A3,ZFAND2B"
TCGA.AA.A02E.01A	2	220022881	220480729	197	0.0387	NEUTRAL	NA	25	"ABCB6,ANKZF1,ASIC4,ATG9A,CHPF,CNPPD1,DES,DNAJB2,DNPEP,FAM134A,GLB1L,GMPPA,INHA,LOC100996693,NHEJ1,OBSL1,PTPRN,RESP18,SLC23A3,SPEG,STK11IP,STK16,TMEM198,TUBA4A,ZFAND2B"
TCGA.AG.A01W.01A	2	220034849	220065036	25	0.0432	NEUTRAL	NA	2	"CNPPD1,FAM134A"
TCGA.AG.A01W.01A	2	220065523	220108121	15	-0.3831	NEUTRAL	NA	5	"ABCB6,ANKZF1,ATG9A,GLB1L,ZFAND2B"
TCGA.AA.A00D.01A	2	220075385	220104082	17	0.1827	NEUTRAL	NA	4	"ABCB6,ANKZF1,ATG9A,GLB1L"
TCGA.AG.3891.01A	2	220077061	220107166	38	0.2548	NEUTRAL	NA	4	"ABCB6,ANKZF1,ATG9A,GLB1L"
TCGA.AA.A00L.01A	2	220077659	220107166	21	-0.0763	NEUTRAL	NA	4	"ABCB6,ANKZF1,ATG9A,GLB1L"
TCGA.AA.A00O.01A	2	220079064	242813848	1422	-0.1101	NEUTRAL	NA	173	Too-Many
TCGA.AG.A02X.01A	2	220079636	223168572	219	-0.2227	NEUTRAL	NA	24	"ABCB6,ANKZF1,ASIC4,ATG9A,CCDC140,CHPF,DES,DNAJB2,DNPEP,EPHA4,GLB1L,GMPPA,INHA,LOC100996693,OBSL1,PAX3,PTPRN,RESP18,SLC4A3,SPEG,STK11IP,STK16,TMEM198,TUBA4A"
TCGA.AG.4009.01A	2	220100148	220147806	29	-0.1709	NEUTRAL	NA	5	"ANKZF1,DNAJB2,GLB1L,STK16,TUBA4A"
TCGA.AA.A00D.01A	2	220104301	220402306	68	-0.1832	NEUTRAL	NA	12	"ASIC4,DES,DNAJB2,DNPEP,GLB1L,GMPPA,LOC100996693,PTPRN,RESP18,SPEG,STK16,TUBA4A"
TCGA.AA.A02H.01A	2	220104862	220506315	145	-0.2339	NEUTRAL	NA	18	"ASIC4,CHPF,DES,DNAJB2,DNPEP,GLB1L,GMPPA,INHA,LOC100996693,OBSL1,PTPRN,RESP18,SLC4A3,SPEG,STK11IP,STK16,TMEM198,TUBA4A"
TCGA.AA.3967.01A	2	220107166	220251346	52	0.0046	NEUTRAL	NA	7	"DNAJB2,DNPEP,GLB1L,PTPRN,RESP18,STK16,TUBA4A"
TCGA.AG.A00H.01A	2	220107166	242813848	1440	-0.1333	NEUTRAL	NA	170	Too-Many
TCGA.AG.3906.01A	2	220107470	220286015	53	0.0134	NEUTRAL	NA	8	"DES,DNAJB2,DNPEP,GLB1L,PTPRN,RESP18,STK16,TUBA4A"
TCGA.AG.3891.01A	2	220107470	220473255	144	0.0187	NEUTRAL	NA	17	"ASIC4,CHPF,DES,DNAJB2,DNPEP,GLB1L,GMPPA,INHA,LOC100996693,OBSL1,PTPRN,RESP18,SPEG,STK11IP,STK16,TMEM198,TUBA4A"
TCGA.AA.A00L.01A	2	220107470	232656391	498	-0.4827	NEUTRAL	NA	71	"ACSL3,AGFG1,AP1S3,ARMC9,ASIC4,B3GNT7,C2orf57,C2orf72,C2orf83,CAB39,CCDC140,CCL20,CHPF,COL4A3,COL4A4,COPS7B,CUL3,DAW1,DES,DNAJB2,DNER,DNPEP,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,GLB1L,GMPPA,GPR55,HTR2B,INHA,IRS1,ITM2C,KCNE4,LOC100996693,MFF,MOGAT1,MRPL44,NCL,NMUR1,NYAP2,OBSL1,PAX3,PDE6D,PID1,PSMD1,PTMA,PTPRN,RESP18,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP100,SP110,SP140,SP140L,SPATA3,SPEG,SPHKAP,STK11IP,STK16,TM4SF20,TMEM198,TRIP12,TUBA4A,WDFY1"
TCGA.AA.A01Q.01A	2	220107872	220118478	11	-0.2558	NEUTRAL	NA	3	"GLB1L,STK16,TUBA4A"
TCGA.AA.A010.01A	2	220107872	220283174	63	-0.4392	NEUTRAL	NA	8	"DES,DNAJB2,DNPEP,GLB1L,PTPRN,RESP18,STK16,TUBA4A"
TCGA.AG.A01W.01A	2	220109991	220110851	3	0.3628	NEUTRAL	NA	2	"GLB1L,STK16"
TCGA.AG.A015.01A	2	220110675	220168419	32	0.3049	NEUTRAL	NA	4	"DNAJB2,PTPRN,STK16,TUBA4A"
TCGA.AF.3914.01A	2	220111197	220155205	18	0.2653	NEUTRAL	NA	4	"DNAJB2,PTPRN,STK16,TUBA4A"
TCGA.AA.A01C.01A	2	220111197	224862793	247	-0.0411	NEUTRAL	NA	30	"ACSL3,AP1S3,ASIC4,CCDC140,CHPF,DES,DNAJB2,DNPEP,EPHA4,FARSB,GMPPA,INHA,KCNE4,LOC100996693,MOGAT1,MRPL44,OBSL1,PAX3,PTPRN,RESP18,SCG2,SERPINE2,SGPP2,SLC4A3,SPEG,STK11IP,STK16,TMEM198,TUBA4A,WDFY1"
TCGA.CK.5914.01A	2	220117447	220238952	39	-0.2617	NEUTRAL	NA	5	"DNAJB2,DNPEP,PTPRN,RESP18,TUBA4A"
TCGA.AG.A01W.01A	2	220120426	220147620	22	0.1809	NEUTRAL	NA	1	DNAJB2
TCGA.A6.3808.01A	2	220144501	220471731	152	-0.0447	NEUTRAL	NA	14	"ASIC4,CHPF,DES,DNAJB2,DNPEP,GMPPA,INHA,LOC100996693,OBSL1,PTPRN,RESP18,SPEG,STK11IP,TMEM198"
TCGA.AG.A015.01A	2	220172139	220366180	49	-0.0131	NEUTRAL	NA	7	"DES,DNPEP,GMPPA,LOC100996693,PTPRN,RESP18,SPEG"
TCGA.AA.A01Q.01A	2	220173598	220251346	10	0.1366	NEUTRAL	NA	3	"DNPEP,PTPRN,RESP18"
TCGA.AG.A01W.01A	2	220204886	220209222	9	-0.1413	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	220214560	226224346	176	0.3265	NEUTRAL	NA	28	"ACSL3,AP1S3,ASIC4,CCDC140,CHPF,CUL3,DES,DNPEP,DOCK10,EPHA4,FAM124B,FARSB,GMPPA,INHA,KCNE4,LOC100996693,MOGAT1,MRPL44,OBSL1,PAX3,SCG2,SERPINE2,SGPP2,SLC4A3,SPEG,STK11IP,TMEM198,WDFY1"
TCGA.CK.5914.01A	2	220239525	220283174	13	0.2753	NEUTRAL	NA	2	"DES,DNPEP"
TCGA.AA.3967.01A	2	220283174	220414387	65	0.3532	NEUTRAL	NA	7	"ASIC4,CHPF,DES,GMPPA,LOC100996693,SPEG,TMEM198"
TCGA.CK.5914.01A	2	220284760	220432409	89	-0.2455	NEUTRAL	NA	8	"ASIC4,CHPF,DES,GMPPA,LOC100996693,OBSL1,SPEG,TMEM198"
TCGA.AG.3906.01A	2	220288429	220480729	89	0.3216	NEUTRAL	NA	10	"ASIC4,CHPF,DES,GMPPA,INHA,LOC100996693,OBSL1,SPEG,STK11IP,TMEM198"
TCGA.AA.A01Q.01A	2	220306212	220355124	13	0.2196	NEUTRAL	NA	1	SPEG
TCGA.AG.4009.01A	2	220312649	220397547	41	-0.3924	NEUTRAL	NA	4	"ASIC4,GMPPA,LOC100996693,SPEG"
TCGA.AF.3914.01A	2	220315819	220423930	64	-0.1042	NEUTRAL	NA	7	"ASIC4,CHPF,GMPPA,LOC100996693,OBSL1,SPEG,TMEM198"
TCGA.AG.A01L.01A	2	220326567	220355124	23	0.1139	NEUTRAL	NA	1	SPEG
TCGA.AA.A010.01A	2	220331849	220462543	75	-0.4008	NEUTRAL	NA	8	"ASIC4,CHPF,GMPPA,INHA,LOC100996693,OBSL1,SPEG,TMEM198"
TCGA.AG.A01L.01A	2	220356791	220399852	15	-0.3454	NEUTRAL	NA	4	"ASIC4,GMPPA,LOC100996693,SPEG"
TCGA.AG.A015.01A	2	220399852	220439459	24	0.1411	NEUTRAL	NA	5	"ASIC4,CHPF,INHA,OBSL1,TMEM198"
TCGA.AG.A01L.01A	2	220401757	220439459	23	0.2178	NEUTRAL	NA	5	"ASIC4,CHPF,INHA,OBSL1,TMEM198"
TCGA.AG.3909.01A	2	220415460	220439459	18	-0.3317	NEUTRAL	NA	2	"INHA,OBSL1"
TCGA.AA.3967.01A	2	220415460	232026017	585	5.00E-04	NEUTRAL	NA	49	"ACSL3,AGFG1,AP1S3,C2orf72,C2orf83,CAB39,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,GPR55,HTR2B,INHA,IRS1,ITM2C,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,OBSL1,PAX3,PID1,PSMD1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,STK11IP,TM4SF20,TRIP12,WDFY1"
TCGA.AA.A01Q.01A	2	220422553	231379844	334	0.1865	NEUTRAL	NA	42	"ACSL3,AGFG1,AP1S3,C2orf83,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,INHA,IRS1,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,OBSL1,PAX3,PID1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP100,SP110,SP140,SP140L,SPHKAP,STK11IP,TM4SF20,TRIP12,WDFY1"
TCGA.CK.5914.01A	2	220434895	220496663	29	0.1685	NEUTRAL	NA	4	"INHA,OBSL1,SLC4A3,STK11IP"
TCGA.AA.3844	2	220459088	231461599	3776	-0.1585	NEUTRAL	NA	40	"ACSL3,AGFG1,AP1S3,C2orf83,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,IRS1,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,PAX3,PID1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP100,SP110,SP140,SP140L,SPHKAP,STK11IP,TM4SF20,TRIP12,WDFY1"
TCGA.AG.4009.01A	2	220462543	220501352	26	-0.3914	NEUTRAL	NA	2	"SLC4A3,STK11IP"
TCGA.AG.A00C.01A	2	220462543	223096780	57	-0.1698	NEUTRAL	NA	4	"EPHA4,PAX3,SLC4A3,STK11IP"
TCGA.AA.3815.01A	2	220471383	242842428	1719	-0.0581	NEUTRAL	NA	154	Too-Many
TCGA.AG.3891.01A	2	220473782	220480729	7	-0.51	NEUTRAL	NA	1	STK11IP
TCGA.AG.A01L.01A	2	220476289	242813848	1368	0.1555	NEUTRAL	NA	154	Too-Many
TCGA.AG.A015.01A	2	220478455	232880183	615	-0.1594	NEUTRAL	NA	57	"ACSL3,AGFG1,AP1S3,ARMC9,B3GNT7,C2orf57,C2orf72,C2orf83,CAB39,CCDC140,CCL20,COL4A3,COL4A4,COPS7B,CUL3,DAW1,DIS3L2,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,GPR55,HTR2B,IRS1,ITM2C,KCNE4,MFF,MOGAT1,MRPL44,NCL,NMUR1,NPPC,NYAP2,PAX3,PDE6D,PID1,PSMD1,PTMA,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,STK11IP,TM4SF20,TRIP12,WDFY1"
TCGA.AA.A02K.01A	2	220493825	242686314	1532	0.1131	NEUTRAL	NA	149	Too-Many
TCGA.A6.3808.01A	2	220494745	224847350	118	0.0963	NEUTRAL	NA	14	"ACSL3,AP1S3,CCDC140,EPHA4,FARSB,KCNE4,MOGAT1,MRPL44,PAX3,SCG2,SERPINE2,SGPP2,SLC4A3,WDFY1"
TCGA.AG.A023.01A	2	220499092	232028297	534	0.0668	NEUTRAL	NA	46	"ACSL3,AGFG1,AP1S3,C2orf72,C2orf83,CAB39,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,GPR55,HTR2B,IRS1,ITM2C,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,PAX3,PID1,PSMD1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,TM4SF20,TRIP12,WDFY1"
TCGA.AG.4009.01A	2	220502281	226516101	177	0.0048	NEUTRAL	NA	18	"ACSL3,AP1S3,CCDC140,CUL3,DOCK10,EPHA4,FAM124B,FARSB,KCNE4,MOGAT1,MRPL44,NYAP2,PAX3,SCG2,SERPINE2,SGPP2,SLC4A3,WDFY1"
TCGA.AF.3914.01A	2	220504157	232576003	586	0.1194	NEUTRAL	NA	52	"ACSL3,AGFG1,AP1S3,ARMC9,B3GNT7,C2orf57,C2orf72,C2orf83,CAB39,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,GPR55,HTR2B,IRS1,ITM2C,KCNE4,MFF,MOGAT1,MRPL44,NCL,NMUR1,NYAP2,PAX3,PID1,PSMD1,PTMA,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,TM4SF20,TRIP12,WDFY1"
TCGA.AA.A00A.01A	2	220505463	231041349	251	-0.5019	NEUTRAL	NA	36	"ACSL3,AGFG1,AP1S3,C2orf83,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,IRS1,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,PAX3,PID1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP110,SPHKAP,TM4SF20,TRIP12,WDFY1"
TCGA.AG.3584	2	220508666	243048759	7446	-0.0297	NEUTRAL	NA	152	Too-Many
TCGA.AA.3811	2	220719530	234954001	4667	0.0802	NEUTRAL	NA	88	"ACSL3,AGFG1,ALPI,ALPP,ALPPL2,AP1S3,ARMC9,ATG16L1,B3GNT7,C2orf57,C2orf72,C2orf82,C2orf83,CAB39,CCDC140,CCL20,CHRND,CHRNG,COL4A3,COL4A4,COPS7B,CUL3,DAW1,DGKD,DIS3L2,DNAJB3,DNER,DOCK10,ECEL1,EFHD1,EIF4E2,EPHA4,FAM124B,FARSB,FBXO36,GIGYF2,GPR55,HJURP,HTR2B,INPP5D,IRS1,ITM2C,KCNE4,KCNJ13,MFF,MOGAT1,MROH2A,MRPL44,NCL,NEU2,NGEF,NMUR1,NPPC,NYAP2,PAX3,PDE6D,PID1,PRSS56,PSMD1,PTMA,RHBDD1,SAG,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,TIGD1,TM4SF20,TRIP12,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40,WDFY1"
TCGA.AA.3850	2	220781258	230167322	3215	-0.13445	NEUTRAL	NA	30	"ACSL3,AGFG1,AP1S3,C2orf83,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DOCK10,EPHA4,FAM124B,FARSB,IRS1,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,PAX3,PID1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC19A3,SPHKAP,TM4SF20,WDFY1"
TCGA.AA.3941	2	220784985	231454353	3627	-0.0145	NEUTRAL	NA	38	"ACSL3,AGFG1,AP1S3,C2orf83,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,IRS1,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,PAX3,PID1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPHKAP,TM4SF20,TRIP12,WDFY1"
TCGA.EI.7004	2	221853892	243048759	6868	0.2761	NEUTRAL	NA	152	Too-Many
TCGA.DM.A1HB	2	221927851	243048759	6684	0.0206	NEUTRAL	NA	152	Too-Many
TCGA.D5.5538	2	222174819	222738040	213	0.0039	NEUTRAL	NA	1	EPHA4
TCGA.AA.A010.01A	2	222290699	222310776	8	0.3768	NEUTRAL	NA	1	EPHA4
TCGA.AG.3891.01A	2	222290699	226273550	166	-0.0902	NEUTRAL	NA	17	"ACSL3,AP1S3,CCDC140,CUL3,DOCK10,EPHA4,FAM124B,FARSB,KCNE4,MOGAT1,MRPL44,NYAP2,PAX3,SCG2,SERPINE2,SGPP2,WDFY1"
TCGA.AG.3906.01A	2	222290699	228104802	231	-0.0447	NEUTRAL	NA	21	"ACSL3,AP1S3,CCDC140,COL4A3,COL4A4,CUL3,DOCK10,EPHA4,FAM124B,FARSB,IRS1,KCNE4,MOGAT1,MRPL44,NYAP2,PAX3,RHBDD1,SCG2,SERPINE2,SGPP2,WDFY1"
TCGA.AG.A00Y.01A	2	222290699	230787191	392	-0.0981	NEUTRAL	NA	32	"ACSL3,AGFG1,AP1S3,C2orf83,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,IRS1,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,PAX3,PID1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC19A3,SPHKAP,TM4SF20,TRIP12,WDFY1"
TCGA.AA.A02H.01A	2	222290699	232081311	535	0.1498	NEUTRAL	NA	46	"ACSL3,AGFG1,AP1S3,ARMC9,C2orf72,C2orf83,CAB39,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,GPR55,HTR2B,IRS1,ITM2C,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,PAX3,PID1,PSMD1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,TM4SF20,TRIP12,WDFY1"
TCGA.CK.4948.01B	2	222307507	223096780	17	0.2387	NEUTRAL	NA	2	"EPHA4,PAX3"
TCGA.AA.A010.01A	2	222320227	223168572	20	-0.3737	NEUTRAL	NA	3	"CCDC140,EPHA4,PAX3"
TCGA.D5.5538	2	222739578	229385749	2209	-0.0002	NEUTRAL	NA	28	"ACSL3,AGFG1,AP1S3,C2orf83,CCDC140,CCL20,COL4A3,COL4A4,CUL3,DAW1,DOCK10,FAM124B,FARSB,IRS1,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,PAX3,RHBDD1,SCG2,SERPINE2,SGPP2,SLC19A3,SPHKAP,TM4SF20,WDFY1"
TCGA.AA.3681	2	222809800	243048759	6543	0.0209	NEUTRAL	NA	151	Too-Many
TCGA.CK.4948.01B	2	223158362	238682959	1160	-0.0446	NEUTRAL	NA	101	Too-Many
TCGA.AG.3909.01A	2	223161645	224642354	50	0.2914	NEUTRAL	NA	9	"ACSL3,AP1S3,CCDC140,FARSB,KCNE4,MOGAT1,PAX3,SCG2,SGPP2"
TCGA.AA.A010.01A	2	223339237	225400198	91	0.338	NEUTRAL	NA	12	"ACSL3,AP1S3,CUL3,FAM124B,FARSB,KCNE4,MOGAT1,MRPL44,SCG2,SERPINE2,SGPP2,WDFY1"
TCGA.AG.A00C.01A	2	223339237	228168523	243	-0.18	NEUTRAL	NA	18	"ACSL3,AP1S3,COL4A3,COL4A4,CUL3,DOCK10,FAM124B,FARSB,IRS1,KCNE4,MOGAT1,MRPL44,NYAP2,RHBDD1,SCG2,SERPINE2,SGPP2,WDFY1"
TCGA.AG.A02X.01A	2	223339237	242813848	1295	0.2076	NEUTRAL	NA	149	Too-Many
TCGA.D5.5539	2	223489292	224843400	485	-0.406	NEUTRAL	NA	9	"ACSL3,AP1S3,FARSB,KCNE4,MOGAT1,MRPL44,SCG2,SERPINE2,WDFY1"
TCGA.AF.3911	2	224070803	243048759	6100	-0.0166	NEUTRAL	NA	144	Too-Many
TCGA.CL.5917	2	224174925	243048759	6054	-0.0252	NEUTRAL	NA	144	Too-Many
TCGA.AG.3909.01A	2	224770595	224809828	4	0.2961	NEUTRAL	NA	1	WDFY1
TCGA.AG.3909.01A	2	224822141	224842201	6	-0.3495	NEUTRAL	NA	2	"MRPL44,SERPINE2"
TCGA.D5.5539	2	224847267	242718443	5787	-0.0751	NEUTRAL	NA	137	Too-Many
TCGA.AA.A01C.01A	2	224866341	227968642	119	0.2702	NEUTRAL	NA	8	"COL4A4,CUL3,DOCK10,FAM124B,IRS1,NYAP2,RHBDD1,SERPINE2"
TCGA.AA.A01S	2	225120550	235942798	3481	0.19845	NEUTRAL	NA	78	"AGFG1,ALPI,ALPP,ALPPL2,ARL4C,ARMC9,ATG16L1,B3GNT7,C2orf57,C2orf72,C2orf82,C2orf83,CAB39,CCL20,CHRND,CHRNG,COL4A3,COL4A4,COPS7B,CUL3,DAW1,DGKD,DIS3L2,DNAJB3,DNER,DOCK10,ECEL1,EFHD1,EIF4E2,FAM124B,FBXO36,GIGYF2,GPR55,HJURP,HTR2B,INPP5D,IRS1,ITM2C,KCNJ13,MFF,MROH2A,NCL,NEU2,NGEF,NMUR1,NPPC,NYAP2,PDE6D,PID1,PRSS56,PSMD1,PTMA,RHBDD1,SAG,SH3BP4,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,SPP2,TIGD1,TM4SF20,TRIP12,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A00Q.01A	2	225630397	226516101	6	0.3356	NEUTRAL	NA	2	"DOCK10,NYAP2"
TCGA.AA.A010.01A	2	225630397	230020492	240	0.2102	NEUTRAL	NA	15	"AGFG1,C2orf83,CCL20,COL4A3,COL4A4,DAW1,DOCK10,IRS1,MFF,NYAP2,PID1,RHBDD1,SLC19A3,SPHKAP,TM4SF20"
TCGA.F5.6813	2	225901770	243048759	5415	0.3528	NEUTRAL	NA	137	Too-Many
TCGA.G4.6322	2	225959849	232012374	1858	0.0221	NEUTRAL	NA	29	"AGFG1,C2orf72,C2orf83,CAB39,CCL20,COL4A3,COL4A4,DAW1,DNER,FBXO36,GPR55,HTR2B,IRS1,ITM2C,MFF,NYAP2,PID1,PSMD1,RHBDD1,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,TM4SF20,TRIP12"
TCGA.G4.6295	2	226278397	233969442	2253	-0.4128	NEUTRAL	NA	55	"AGFG1,ALPI,ALPP,ALPPL2,ARMC9,B3GNT7,C2orf57,C2orf72,C2orf82,C2orf83,CAB39,CCL20,CHRND,CHRNG,COL4A3,COL4A4,COPS7B,DAW1,DIS3L2,DNER,ECEL1,EFHD1,EIF4E2,FBXO36,GIGYF2,GPR55,HTR2B,INPP5D,IRS1,ITM2C,KCNJ13,MFF,NCL,NEU2,NGEF,NMUR1,NPPC,NYAP2,PDE6D,PID1,PRSS56,PSMD1,PTMA,RHBDD1,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,TIGD1,TM4SF20,TRIP12"
TCGA.AH.6897	2	226317817	243014629	5264	-0.0353	NEUTRAL	NA	136	Too-Many
TCGA.QL.A97D	2	226969836	243048759	5092	-0.0873	NEUTRAL	NA	135	Too-Many
TCGA.A6.6648	2	227355030	243048759	4980	-0.0287	NEUTRAL	NA	135	Too-Many
TCGA.AG.A01W.01A	2	227437633	227598665	13	0.2664	NEUTRAL	NA	1	IRS1
TCGA.AA.A00Q.01A	2	227659718	231036762	139	-0.3991	NEUTRAL	NA	18	"AGFG1,C2orf83,CCL20,COL4A3,COL4A4,DAW1,DNER,FBXO36,IRS1,MFF,PID1,RHBDD1,SLC16A14,SLC19A3,SP110,SPHKAP,TM4SF20,TRIP12"
TCGA.AG.A01W.01A	2	227676080	227813047	15	0.2451	NEUTRAL	NA	1	RHBDD1
TCGA.AG.3909.01A	2	227729361	227898065	17	0.3703	NEUTRAL	NA	2	"COL4A4,RHBDD1"
TCGA.AG.3891.01A	2	227729361	227924830	28	-0.2577	NEUTRAL	NA	2	"COL4A4,RHBDD1"
TCGA.AG.4009.01A	2	227729361	231678720	329	0.0464	NEUTRAL	NA	21	"AGFG1,C2orf83,CAB39,CCL20,COL4A3,COL4A4,DAW1,DNER,FBXO36,MFF,PID1,RHBDD1,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPHKAP,TM4SF20,TRIP12"
TCGA.AG.A01W.01A	2	227817211	227824044	7	-0.2969	NEUTRAL	NA	1	RHBDD1
TCGA.RU.A8FL	2	227914624	231517204	1154	0.241	NEUTRAL	NA	19	"AGFG1,C2orf83,CCL20,COL4A3,COL4A4,DAW1,DNER,FBXO36,MFF,PID1,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPHKAP,TM4SF20,TRIP12"
TCGA.AA.3930.01A	2	227924083	227973485	18	-0.428	NEUTRAL	NA	1	COL4A4
TCGA.AA.A00N.01A	2	227964271	228125719	33	0.323	NEUTRAL	NA	2	"COL4A3,COL4A4"
TCGA.A6.3808.01A	2	227966160	233127875	432	-0.1265	NEUTRAL	NA	36	"AGFG1,ARMC9,B3GNT7,C2orf57,C2orf72,C2orf83,CAB39,CCL20,COL4A3,COL4A4,COPS7B,DAW1,DIS3L2,DNER,FBXO36,GPR55,HTR2B,ITM2C,MFF,NCL,NMUR1,NPPC,PDE6D,PID1,PSMD1,PTMA,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,TM4SF20,TRIP12"
TCGA.AG.3891.01A	2	227966547	239264587	897	-0.0272	NEUTRAL	NA	94	"ACKR3,AGAP1,AGFG1,ALPI,ALPP,ALPPL2,ARL4C,ARMC9,ASB18,ATG16L1,B3GNT7,C2orf57,C2orf72,C2orf82,C2orf83,CAB39,CCL20,CHRND,CHRNG,COL4A3,COL4A4,COL6A3,COPS7B,COPS8,DAW1,DGKD,DIS3L2,DNAJB3,DNER,ECEL1,EFHD1,EIF4E2,ESPNL,FAM132B,FBXO36,GBX2,GIGYF2,GPR55,HES6,HJURP,HTR2B,ILKAP,INPP5D,IQCA1,ITM2C,KCNJ13,KLHL30,LRRFIP1,MFF,MLPH,MROH2A,NCL,NEU2,NGEF,NMUR1,NPPC,PDE6D,PER2,PID1,PRLH,PRSS56,PSMD1,PTMA,RAB17,RAMP1,RBM44,SAG,SCLY,SH3BP4,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,SPP2,TIGD1,TM4SF20,TRAF3IP1,TRIP12,TRPM8,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3930.01A	2	227973890	233074976	417	0.0516	NEUTRAL	NA	36	"AGFG1,ARMC9,B3GNT7,C2orf57,C2orf72,C2orf83,CAB39,CCL20,COL4A3,COL4A4,COPS7B,DAW1,DIS3L2,DNER,FBXO36,GPR55,HTR2B,ITM2C,MFF,NCL,NMUR1,NPPC,PDE6D,PID1,PSMD1,PTMA,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,TM4SF20,TRIP12"
TCGA.AA.A01C.01A	2	227976325	231740298	283	0.1862	NEUTRAL	NA	21	"AGFG1,C2orf83,CAB39,CCL20,COL4A3,COL4A4,DAW1,DNER,FBXO36,ITM2C,MFF,PID1,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPHKAP,TM4SF20,TRIP12"
TCGA.AA.3968	2	228005905	243048759	4780	0.351	NEUTRAL	NA	133	Too-Many
TCGA.AA.3544	2	228041346	228191201	58	-0.2027	NEUTRAL	NA	2	"COL4A3,MFF"
TCGA.AG.3906.01A	2	228121039	231327103	234	-0.0826	NEUTRAL	NA	18	"AGFG1,C2orf83,CCL20,COL4A3,DAW1,DNER,FBXO36,MFF,PID1,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPHKAP,TM4SF20,TRIP12"
TCGA.AA.A00N.01A	2	228168523	228172409	3	-0.4772	NEUTRAL	NA	1	COL4A3
TCGA.AG.A00C.01A	2	228169654	228204966	9	0.3705	NEUTRAL	NA	2	"COL4A3,MFF"
TCGA.AG.3909.01A	2	228172409	228566829	36	-0.0814	NEUTRAL	NA	6	"AGFG1,C2orf83,COL4A3,MFF,SLC19A3,TM4SF20"
TCGA.CK.5914.01A	2	228173584	228197118	6	-0.3169	NEUTRAL	NA	2	"COL4A3,MFF"
TCGA.AA.3544	2	228198058	240589687	4105	0.0714	NEUTRAL	NA	95	"ACKR3,AGAP1,AGFG1,ALPI,ALPP,ALPPL2,ARL4C,ARMC9,ASB1,ASB18,ATG16L1,B3GNT7,C2orf57,C2orf72,C2orf82,C2orf83,CAB39,CCL20,CHRND,CHRNG,COL6A3,COPS7B,COPS8,DAW1,DGKD,DIS3L2,DNAJB3,DNER,ECEL1,EFHD1,EIF4E2,ESPNL,FAM132B,FBXO36,GBX2,GIGYF2,GPR55,HDAC4,HES6,HJURP,HTR2B,ILKAP,INPP5D,IQCA1,ITM2C,KCNJ13,KLHL30,LRRFIP1,MFF,MLPH,MROH2A,NCL,NEU2,NGEF,NMUR1,NPPC,PDE6D,PER2,PID1,PRLH,PRSS56,PSMD1,PTMA,RAB17,RAMP1,RBM44,SAG,SCLY,SH3BP4,SLC16A14,SLC19A3,SP100,SP110,SP140,SP140L,SPATA3,SPHKAP,SPP2,TIGD1,TM4SF20,TRAF3IP1,TRIP12,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AG.A00C.01A	2	228207402	230701517	106	-0.2236	NEUTRAL	NA	11	"AGFG1,C2orf83,CCL20,DAW1,DNER,MFF,PID1,SLC19A3,SPHKAP,TM4SF20,TRIP12"
TCGA.AA.A00N.01A	2	228476129	228755900	19	-0.301	NEUTRAL	NA	4	"C2orf83,CCL20,DAW1,SLC19A3"
TCGA.AA.3867	2	229345472	229920519	152	0.077	NEUTRAL	NA	1	PID1
TCGA.AA.3875	2	229390216	230612450	432	-0.4485	NEUTRAL	NA	2	"DNER,PID1"
TCGA.F4.6805	2	229866470	243048759	4225	-0.5058	NEUTRAL	NA	123	Too-Many
TCGA.AA.3867	2	229930627	243014629	4195	0.2588	NEUTRAL	NA	123	Too-Many
TCGA.AA.3850	2	230213519	231406679	371	0.06845	NEUTRAL	NA	8	"DNER,FBXO36,SLC16A14,SP100,SP110,SP140,SP140L,TRIP12"
TCGA.AA.A010.01A	2	230223209	230456244	12	0.312	NEUTRAL	NA	1	DNER
TCGA.AG.A01W.01A	2	230549155	230811122	29	0.138	NEUTRAL	NA	3	"DNER,FBXO36,TRIP12"
TCGA.CK.5914.01A	2	230632222	230638761	5	0.0084	NEUTRAL	NA	1	TRIP12
TCGA.AA.A00N.01A	2	230632222	230643544	8	-0.2708	NEUTRAL	NA	1	TRIP12
TCGA.AG.3909.01A	2	230632222	230643544	8	-0.0671	NEUTRAL	NA	1	TRIP12
TCGA.AA.3875	2	230632267	232331733	448	0.0221	NEUTRAL	NA	17	"ARMC9,B3GNT7,C2orf72,CAB39,FBXO36,GPR55,HTR2B,ITM2C,NCL,PSMD1,SLC16A14,SP100,SP110,SP140,SP140L,SPATA3,TRIP12"
TCGA.AA.A010.01A	2	230643544	230652173	3	-0.2151	NEUTRAL	NA	1	TRIP12
TCGA.AG.3909.01A	2	230650426	230679764	22	0.3112	NEUTRAL	NA	1	TRIP12
TCGA.AA.A010.01A	2	230670419	230693858	9	0.0064	NEUTRAL	NA	1	TRIP12
TCGA.AG.3909.01A	2	230683033	230695753	4	-0.0352	NEUTRAL	NA	1	TRIP12
TCGA.AA.A00N.01A	2	230683033	231036346	21	-0.0552	NEUTRAL	NA	4	"FBXO36,SLC16A14,SP110,TRIP12"
TCGA.CK.5914.01A	2	230693858	231036346	20	0.1843	NEUTRAL	NA	4	"FBXO36,SLC16A14,SP110,TRIP12"
TCGA.AG.A00C.01A	2	230705521	230787191	6	0.3509	NEUTRAL	NA	1	TRIP12
TCGA.AG.3909.01A	2	230744651	231033823	10	0.2822	NEUTRAL	NA	4	"FBXO36,SLC16A14,SP110,TRIP12"
TCGA.AG.A01W.01A	2	230823879	232902741	187	0.2257	NEUTRAL	NA	23	"ARMC9,B3GNT7,C2orf57,C2orf72,CAB39,COPS7B,DIS3L2,FBXO36,GPR55,HTR2B,ITM2C,NCL,NMUR1,NPPC,PDE6D,PSMD1,PTMA,SLC16A14,SP100,SP110,SP140,SP140L,SPATA3"
TCGA.AG.A00C.01A	2	230840910	232262814	166	-0.0941	NEUTRAL	NA	15	"ARMC9,B3GNT7,C2orf72,CAB39,FBXO36,GPR55,HTR2B,ITM2C,PSMD1,SLC16A14,SP100,SP110,SP140,SP140L,SPATA3"
TCGA.AG.A00Y.01A	2	230840910	242813848	964	0.2237	NEUTRAL	NA	120	Too-Many
TCGA.AA.A010.01A	2	231048226	231103434	15	0.0055	NEUTRAL	NA	2	"SP110,SP140"
TCGA.AA.A00Q.01A	2	231077428	232209648	100	-0.3456	NEUTRAL	NA	12	"ARMC9,C2orf72,CAB39,GPR55,HTR2B,ITM2C,PSMD1,SP100,SP110,SP140,SP140L,SPATA3"
TCGA.AA.A00A.01A	2	231077428	242800876	761	-0.3929	NEUTRAL	NA	117	Too-Many
TCGA.AA.A00D.01A	2	231134500	231282246	8	0.213	NEUTRAL	NA	3	"SP100,SP140,SP140L"
TCGA.AA.A00N.01A	2	231149003	231177250	12	-0.3579	NEUTRAL	NA	1	SP140
TCGA.AA.A010.01A	2	231150409	231157314	4	0.0372	NEUTRAL	NA	1	SP140
TCGA.AG.3909.01A	2	231152543	231158909	4	-0.0564	NEUTRAL	NA	1	SP140
TCGA.CK.5914.01A	2	231162055	231193413	8	-0.3001	NEUTRAL	NA	2	"SP140,SP140L"
TCGA.DM.A28M.01A	2	231177250	231264810	16	0.0153	NEUTRAL	NA	2	"SP140,SP140L"
TCGA.AG.3909.01A	2	231191903	231339059	37	0.178	NEUTRAL	NA	2	"SP100,SP140L"
TCGA.AA.A00F.01A	2	231193413	231282246	6	0.3321	NEUTRAL	NA	2	"SP100,SP140L"
TCGA.AA.A010.01A	2	231248181	231729691	53	-0.055	NEUTRAL	NA	4	"CAB39,ITM2C,SP100,SP140L"
TCGA.CK.5914.01A	2	231258066	231314228	15	0.3451	NEUTRAL	NA	2	"SP100,SP140L"
TCGA.DM.A28M.01A	2	231267461	239233885	792	-0.1245	NEUTRAL	NA	77	"ACKR3,AGAP1,ALPI,ALPP,ALPPL2,ARL4C,ARMC9,ASB18,ATG16L1,B3GNT7,C2orf57,C2orf72,C2orf82,CAB39,CHRND,CHRNG,COL6A3,COPS7B,COPS8,DGKD,DIS3L2,DNAJB3,ECEL1,EFHD1,EIF4E2,ESPNL,FAM132B,GBX2,GIGYF2,GPR55,HES6,HJURP,HTR2B,ILKAP,INPP5D,IQCA1,ITM2C,KCNJ13,KLHL30,LRRFIP1,MLPH,MROH2A,NCL,NEU2,NGEF,NMUR1,NPPC,PDE6D,PER2,PRLH,PRSS56,PSMD1,PTMA,RAB17,RAMP1,RBM44,SAG,SCLY,SH3BP4,SP100,SP140L,SPATA3,SPP2,TIGD1,TRAF3IP1,TRPM8,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.A6.5665	2	231268785	243048759	3734	-0.3778	NEUTRAL	NA	115	Too-Many
TCGA.AA.A00F.01A	2	231307604	231663437	27	-0.1976	NEUTRAL	NA	2	"CAB39,SP100"
TCGA.AA.A00D.01A	2	231307604	242800876	743	-0.3427	NEUTRAL	NA	114	Too-Many
TCGA.AG.3906.01A	2	231328722	231375759	15	0.245	NEUTRAL	NA	1	SP100
TCGA.AG.3906.01A	2	231379844	239049354	555	-0.0391	NEUTRAL	NA	71	"ACKR3,AGAP1,ALPI,ALPP,ALPPL2,ARL4C,ARMC9,ASB18,ATG16L1,B3GNT7,C2orf57,C2orf72,C2orf82,CAB39,CHRND,CHRNG,COL6A3,COPS7B,COPS8,DGKD,DIS3L2,DNAJB3,ECEL1,EFHD1,EIF4E2,ESPNL,GBX2,GIGYF2,GPR55,HJURP,HTR2B,INPP5D,IQCA1,ITM2C,KCNJ13,KLHL30,LRRFIP1,MLPH,MROH2A,NCL,NEU2,NGEF,NMUR1,NPPC,PDE6D,PRLH,PRSS56,PSMD1,PTMA,RAB17,RAMP1,RBM44,SAG,SCLY,SH3BP4,SP100,SPATA3,SPP2,TIGD1,TRPM8,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3844	2	231477960	232877508	308	0.2088	NEUTRAL	NA	17	"ARMC9,B3GNT7,C2orf57,C2orf72,CAB39,COPS7B,DIS3L2,GPR55,HTR2B,ITM2C,NCL,NMUR1,NPPC,PDE6D,PSMD1,PTMA,SPATA3"
TCGA.RU.A8FL	2	231532404	243048759	3656	0.1665	NEUTRAL	NA	114	Too-Many
TCGA.AA.A01Q.01A	2	231624670	231774666	15	-0.3525	NEUTRAL	NA	3	"CAB39,GPR55,ITM2C"
TCGA.AA.A00N.01A	2	231655569	231921648	21	-0.4003	NEUTRAL	NA	6	"C2orf72,CAB39,GPR55,ITM2C,PSMD1,SPATA3"
TCGA.CK.5914.01A	2	231655569	231934708	25	-0.062	NEUTRAL	NA	6	"C2orf72,CAB39,GPR55,ITM2C,PSMD1,SPATA3"
TCGA.AG.3909.01A	2	231655569	231940159	20	-0.3027	NEUTRAL	NA	6	"C2orf72,CAB39,GPR55,ITM2C,PSMD1,SPATA3"
TCGA.AA.A00F.01A	2	231674961	233428908	138	0.1412	NEUTRAL	NA	26	"ALPI,ALPP,ALPPL2,ARMC9,B3GNT7,C2orf57,C2orf72,CAB39,CHRND,CHRNG,COPS7B,DIS3L2,ECEL1,EIF4E2,GPR55,HTR2B,ITM2C,NCL,NMUR1,NPPC,PDE6D,PRSS56,PSMD1,PTMA,SPATA3,TIGD1"
TCGA.AA.A02E.01A	2	231738085	231927218	8	-0.1194	NEUTRAL	NA	5	"C2orf72,GPR55,ITM2C,PSMD1,SPATA3"
TCGA.AA.A01C.01A	2	231741525	232663517	87	-0.126	NEUTRAL	NA	14	"ARMC9,B3GNT7,C2orf57,C2orf72,COPS7B,GPR55,HTR2B,ITM2C,NCL,NMUR1,PDE6D,PSMD1,PTMA,SPATA3"
TCGA.AA.A01Q.01A	2	231860948	232209648	48	0.1742	NEUTRAL	NA	5	"ARMC9,C2orf72,HTR2B,PSMD1,SPATA3"
TCGA.AG.4009.01A	2	231931577	232087410	28	-0.0438	NEUTRAL	NA	3	"ARMC9,HTR2B,PSMD1"
TCGA.AA.A00N.01A	2	231941731	231951772	8	-0.0261	NEUTRAL	NA	1	PSMD1
TCGA.AG.3909.01A	2	231941731	232035248	19	0.3155	NEUTRAL	NA	2	"HTR2B,PSMD1"
TCGA.AA.A010.01A	2	231978393	232087410	15	-0.1919	NEUTRAL	NA	3	"ARMC9,HTR2B,PSMD1"
TCGA.AA.A00N.01A	2	232018226	232035248	6	0.138	NEUTRAL	NA	1	PSMD1
TCGA.AG.A023.01A	2	232029858	242813848	756	-0.2502	NEUTRAL	NA	108	Too-Many
TCGA.AG.3909.01A	2	232070881	232126967	11	-0.1478	NEUTRAL	NA	1	ARMC9
TCGA.AA.A02H.01A	2	232087410	242813848	727	-0.1441	NEUTRAL	NA	107	Too-Many
TCGA.AG.4009.01A	2	232091402	232378168	32	0.1805	NEUTRAL	NA	3	"ARMC9,B3GNT7,NCL"
TCGA.A6.2672	2	232154460	243048759	3497	-0.4665	NEUTRAL	NA	107	Too-Many
TCGA.AG.3909.01A	2	232262445	232320154	5	-0.3711	NEUTRAL	NA	2	"B3GNT7,NCL"
TCGA.AA.A010.01A	2	232262445	232392797	22	-0.0807	NEUTRAL	NA	3	"B3GNT7,NCL,NMUR1"
TCGA.CK.5914.01A	2	232262445	232577970	32	-0.3634	NEUTRAL	NA	5	"B3GNT7,C2orf57,NCL,NMUR1,PTMA"
TCGA.AG.3611.01A	2	232319852	232378168	16	-0.0671	NEUTRAL	NA	1	NCL
TCGA.AA.A01Q.01A	2	232319852	232457616	19	-0.3634	NEUTRAL	NA	3	"C2orf57,NCL,NMUR1"
TCGA.AA.A02E.01A	2	232321311	232660779	29	-0.2123	NEUTRAL	NA	6	"C2orf57,COPS7B,NCL,NMUR1,PDE6D,PTMA"
TCGA.AA.A00Q.01A	2	232328959	233898838	122	-0.2771	NEUTRAL	NA	23	"ALPI,ALPP,ALPPL2,C2orf57,C2orf82,CHRND,CHRNG,COPS7B,DIS3L2,ECEL1,EFHD1,EIF4E2,GIGYF2,KCNJ13,NCL,NEU2,NGEF,NMUR1,NPPC,PDE6D,PRSS56,PTMA,TIGD1"
TCGA.AA.3875	2	232343109	241647341	3200	-0.4293	NEUTRAL	NA	82	"ACKR3,AGAP1,ALPI,ALPP,ALPPL2,ANKMY1,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG16L1,C2orf57,C2orf82,CAPN10,CHRND,CHRNG,COL6A3,COPS7B,COPS8,DGKD,DIS3L2,DNAJB3,DUSP28,ECEL1,EFHD1,EIF4E2,ESPNL,FAM132B,GBX2,GIGYF2,GPC1,GPR35,HDAC4,HES6,HJURP,ILKAP,INPP5D,IQCA1,KCNJ13,KLHL30,LRRFIP1,MLPH,MROH2A,MYEOV2,NDUFA10,NEU2,NGEF,NMUR1,NPPC,OR6B2,OR6B3,OTOS,PDE6D,PER2,PRLH,PRR21,PRSS56,PTMA,RAB17,RAMP1,RBM44,RNPEPL1,SAG,SCLY,SH3BP4,SPP2,TIGD1,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AG.A00C.01A	2	232389775	232645703	14	0.1897	NEUTRAL	NA	4	"C2orf57,NMUR1,PDE6D,PTMA"
TCGA.AG.3611.01A	2	232389775	242800876	673	-0.3985	NEUTRAL	NA	103	Too-Many
TCGA.AA.A01Q.01A	2	232458462	233273995	29	0.0169	NEUTRAL	NA	8	"ALPP,ALPPL2,C2orf57,COPS7B,DIS3L2,NPPC,PDE6D,PTMA"
TCGA.AG.3909.01A	2	232576545	232665782	16	-0.2139	NEUTRAL	NA	3	"COPS7B,PDE6D,PTMA"
TCGA.AF.3914.01A	2	232597614	232603754	4	-0.2113	NEUTRAL	NA	1	PDE6D
TCGA.AG.4009.01A	2	232597614	233208003	32	0.1053	NEUTRAL	NA	4	"COPS7B,DIS3L2,NPPC,PDE6D"
TCGA.AA.A010.01A	2	232601860	232603754	3	-0.3933	NEUTRAL	NA	1	PDE6D
TCGA.AF.3914.01A	2	232645703	233164723	23	0.2858	NEUTRAL	NA	4	"COPS7B,DIS3L2,NPPC,PDE6D"
TCGA.AA.A00L.01A	2	232658921	233113897	11	0.0902	NEUTRAL	NA	3	"COPS7B,DIS3L2,NPPC"
TCGA.AA.A02E.01A	2	232663517	233408246	52	0.3674	NEUTRAL	NA	10	"ALPI,ALPP,ALPPL2,CHRND,CHRNG,COPS7B,DIS3L2,ECEL1,NPPC,PRSS56"
TCGA.AA.3967.01A	2	232663517	238678509	425	0.0392	NEUTRAL	NA	50	"ACKR3,AGAP1,ALPI,ALPP,ALPPL2,ARL4C,ASB18,ATG16L1,C2orf82,CHRND,CHRNG,COL6A3,COPS7B,COPS8,DGKD,DIS3L2,DNAJB3,ECEL1,EFHD1,EIF4E2,GBX2,GIGYF2,HJURP,INPP5D,IQCA1,KCNJ13,LRRFIP1,MLPH,MROH2A,NEU2,NGEF,NPPC,PRLH,PRSS56,RAB17,SAG,SH3BP4,SPP2,TIGD1,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A01C.01A	2	232672155	233349456	40	0.2777	NEUTRAL	NA	7	"ALPI,ALPP,ALPPL2,COPS7B,DIS3L2,ECEL1,NPPC"
TCGA.DM.A288	2	232849802	233736348	229	-0.4487	NEUTRAL	NA	14	"ALPI,ALPP,ALPPL2,C2orf82,CHRND,CHRNG,DIS3L2,ECEL1,EFHD1,EIF4E2,GIGYF2,KCNJ13,PRSS56,TIGD1"
TCGA.AA.3850	2	232877508	232923279	13	-0.30835	NEUTRAL	NA	1	DIS3L2
TCGA.AA.A010.01A	2	232879583	233201293	22	0.1018	NEUTRAL	NA	1	DIS3L2
TCGA.AG.A00C.01A	2	232879583	233244171	20	-0.2229	NEUTRAL	NA	2	"ALPP,DIS3L2"
TCGA.AA.3844	2	232880844	233177226	74	-0.1643	NEUTRAL	NA	1	DIS3L2
TCGA.AG.A015.01A	2	232888912	233409058	54	0.1181	NEUTRAL	NA	8	"ALPI,ALPP,ALPPL2,CHRND,CHRNG,DIS3L2,ECEL1,PRSS56"
TCGA.AA.3941	2	232891189	233034494	31	0.035	NEUTRAL	NA	1	DIS3L2
TCGA.AA.3850	2	232927741	233418060	114	0.27755	NEUTRAL	NA	10	"ALPI,ALPP,ALPPL2,CHRND,CHRNG,DIS3L2,ECEL1,EIF4E2,PRSS56,TIGD1"
TCGA.AG.A01W.01A	2	233099096	238126904	361	0.2876	NEUTRAL	NA	43	"ACKR3,AGAP1,ALPI,ALPP,ALPPL2,ARL4C,ASB18,ATG16L1,C2orf82,CHRND,CHRNG,COPS8,DGKD,DIS3L2,DNAJB3,ECEL1,EFHD1,EIF4E2,GBX2,GIGYF2,HJURP,INPP5D,IQCA1,KCNJ13,MROH2A,NEU2,NGEF,PRSS56,SAG,SH3BP4,SPP2,TIGD1,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3930.01A	2	233103203	233350587	39	-0.2679	NEUTRAL	NA	5	"ALPI,ALPP,ALPPL2,DIS3L2,ECEL1"
TCGA.AA.3844	2	233178256	234396565	358	0.2152	NEUTRAL	NA	21	"ALPI,ALPP,ALPPL2,ATG16L1,C2orf82,CHRND,CHRNG,DGKD,DIS3L2,ECEL1,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF,PRSS56,SAG,TIGD1,USP40"
TCGA.AF.3914.01A	2	233194474	233245922	10	-0.2509	NEUTRAL	NA	2	"ALPP,DIS3L2"
TCGA.CK.5914.01A	2	233194474	233428908	66	-0.1545	NEUTRAL	NA	10	"ALPI,ALPP,ALPPL2,CHRND,CHRNG,DIS3L2,ECEL1,EIF4E2,PRSS56,TIGD1"
TCGA.AA.A00N.01A	2	233195346	233410216	56	-0.4885	NEUTRAL	NA	8	"ALPI,ALPP,ALPPL2,CHRND,CHRNG,DIS3L2,ECEL1,PRSS56"
TCGA.AG.3909.01A	2	233195346	233428908	53	-0.4777	NEUTRAL	NA	10	"ALPI,ALPP,ALPPL2,CHRND,CHRNG,DIS3L2,ECEL1,EIF4E2,PRSS56,TIGD1"
TCGA.NH.A6GC	2	233239742	233274144	7	-0.3866	NEUTRAL	NA	2	"ALPP,ALPPL2"
TCGA.AA.A00L.01A	2	233243450	233323641	14	-0.4433	NEUTRAL	NA	3	"ALPI,ALPP,ALPPL2"
TCGA.AA.A010.01A	2	233273995	233323641	7	-0.4109	NEUTRAL	NA	2	"ALPI,ALPPL2"
TCGA.AF.3914.01A	2	233273995	233323641	7	-0.0964	NEUTRAL	NA	2	"ALPI,ALPPL2"
TCGA.NH.A6GC	2	233280238	243048759	3254	0.2821	NEUTRAL	NA	95	"ACKR3,AGAP1,AGXT,ALPI,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG16L1,ATG4B,BOK,C2orf54,C2orf82,CAPN10,CHRND,CHRNG,COL6A3,COPS8,D2HGDH,DGKD,DNAJB3,DTYMK,DUSP28,ECEL1,EFHD1,EIF4E2,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GIGYF2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,INPP5D,IQCA1,KCNJ13,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU2,NEU4,NGEF,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,PRSS56,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SAG,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TIGD1,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.G5.6641	2	233309065	243048759	3250	-0.1089	NEUTRAL	NA	95	"ACKR3,AGAP1,AGXT,ALPI,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG16L1,ATG4B,BOK,C2orf54,C2orf82,CAPN10,CHRND,CHRNG,COL6A3,COPS8,D2HGDH,DGKD,DNAJB3,DTYMK,DUSP28,ECEL1,EFHD1,EIF4E2,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GIGYF2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,INPP5D,IQCA1,KCNJ13,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU2,NEU4,NGEF,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,PRSS56,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SAG,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TIGD1,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A01Q.01A	2	233320891	233323641	6	-0.3968	NEUTRAL	NA	1	ALPI
TCGA.AG.A00C.01A	2	233322453	239092626	418	6.00E-04	NEUTRAL	NA	53	"ACKR3,AGAP1,ALPI,ARL4C,ASB18,ATG16L1,C2orf82,CHRND,CHRNG,COL6A3,COPS8,DGKD,DNAJB3,ECEL1,EFHD1,EIF4E2,ESPNL,FAM132B,GBX2,GIGYF2,HJURP,ILKAP,INPP5D,IQCA1,KCNJ13,KLHL30,LRRFIP1,MLPH,MROH2A,NEU2,NGEF,PRLH,PRSS56,RAB17,RAMP1,RBM44,SAG,SCLY,SH3BP4,SPP2,TIGD1,TRPM8,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3930.01A	2	233390851	234091004	104	0.0796	NEUTRAL	NA	11	"C2orf82,CHRND,CHRNG,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF,TIGD1"
TCGA.AA.A01C.01A	2	233391217	234250843	118	-0.0033	NEUTRAL	NA	13	"ATG16L1,C2orf82,CHRND,CHRNG,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF,SAG,TIGD1"
TCGA.AA.A010.01A	2	233393530	233413780	18	-0.2799	NEUTRAL	NA	3	"CHRND,CHRNG,TIGD1"
TCGA.AF.3914.01A	2	233393530	238977896	404	0.1992	NEUTRAL	NA	46	"ACKR3,AGAP1,ARL4C,ASB18,ATG16L1,C2orf82,CHRND,CHRNG,COL6A3,COPS8,DGKD,DNAJB3,EFHD1,EIF4E2,GBX2,GIGYF2,HJURP,INPP5D,IQCA1,KCNJ13,LRRFIP1,MLPH,MROH2A,NEU2,NGEF,PRLH,RAB17,RAMP1,RBM44,SAG,SCLY,SH3BP4,SPP2,TIGD1,TRPM8,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AG.4009.01A	2	233394612	233745819	53	9.00E-04	NEUTRAL	NA	9	"C2orf82,CHRND,CHRNG,EFHD1,EIF4E2,GIGYF2,KCNJ13,NGEF,TIGD1"
TCGA.AA.A00L.01A	2	233398673	234431789	118	-0.2328	NEUTRAL	NA	15	"ATG16L1,C2orf82,CHRND,CHRNG,DGKD,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF,SAG,TIGD1,USP40"
TCGA.AA.A01Q.01A	2	233399803	233410216	12	-0.0269	NEUTRAL	NA	2	"CHRND,CHRNG"
TCGA.A6.3808.01A	2	233399803	238267099	399	0.0833	NEUTRAL	NA	38	"ACKR3,AGAP1,ARL4C,ASB18,ATG16L1,C2orf82,CHRND,CHRNG,COL6A3,COPS8,DGKD,DNAJB3,EFHD1,EIF4E2,GBX2,GIGYF2,HJURP,INPP5D,IQCA1,KCNJ13,MROH2A,NEU2,NGEF,SAG,SH3BP4,SPP2,TIGD1,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AG.A015.01A	2	233409445	241492324	486	-0.1481	NEUTRAL	NA	63	"ACKR3,AGAP1,ANKMY1,ARL4C,ASB1,ASB18,ATG16L1,C2orf82,CHRNG,COL6A3,COPS8,DGKD,DNAJB3,EFHD1,EIF4E2,ESPNL,FAM132B,GBX2,GIGYF2,GPC1,HDAC4,HES6,HJURP,ILKAP,INPP5D,IQCA1,KCNJ13,KLHL30,LRRFIP1,MLPH,MROH2A,MYEOV2,NDUFA10,NEU2,NGEF,OR6B2,OR6B3,OTOS,PER2,PRLH,PRR21,RAB17,RAMP1,RBM44,SAG,SCLY,SH3BP4,SPP2,TIGD1,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A010.01A	2	233414425	233681539	37	0.2217	NEUTRAL	NA	5	"EFHD1,EIF4E2,GIGYF2,KCNJ13,TIGD1"
TCGA.AA.A01Q.01A	2	233414906	234299002	78	0.1946	NEUTRAL	NA	12	"ATG16L1,C2orf82,DGKD,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF,SAG,TIGD1"
TCGA.AA.3941	2	233418640	233420420	8	-0.1797	NEUTRAL	NA	1	EIF4E2
TCGA.AA.3850	2	233418640	233427851	15	-0.26875	NEUTRAL	NA	1	EIF4E2
TCGA.AM.5820	2	233418640	233491376	36	-0.058	NEUTRAL	NA	2	"EFHD1,EIF4E2"
TCGA.AA.A02E.01A	2	233421075	239103379	379	0.3707	NEUTRAL	NA	47	"ACKR3,AGAP1,ARL4C,ASB18,ATG16L1,C2orf82,COL6A3,COPS8,DGKD,DNAJB3,EFHD1,EIF4E2,ESPNL,FAM132B,GBX2,GIGYF2,HJURP,ILKAP,INPP5D,IQCA1,KCNJ13,KLHL30,LRRFIP1,MLPH,MROH2A,NEU2,NGEF,PRLH,RAB17,RAMP1,RBM44,SAG,SCLY,SH3BP4,SPP2,TRPM8,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A00F.01A	2	233431529	233709084	29	-0.2093	NEUTRAL	NA	4	"EFHD1,EIF4E2,GIGYF2,KCNJ13"
TCGA.AG.3909.01A	2	233431529	234191263	84	0.2864	NEUTRAL	NA	9	"ATG16L1,C2orf82,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF"
TCGA.AA.A00N.01A	2	233433590	234247262	114	0.2226	NEUTRAL	NA	10	"ATG16L1,C2orf82,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF,SAG"
TCGA.AM.5820	2	233532566	233733351	44	-0.1406	NEUTRAL	NA	3	"EFHD1,GIGYF2,KCNJ13"
TCGA.AA.A010.01A	2	233684486	233745819	15	-0.2907	NEUTRAL	NA	3	"C2orf82,GIGYF2,NGEF"
TCGA.CK.5914.01A	2	233708704	233791707	23	-0.0579	NEUTRAL	NA	3	"C2orf82,GIGYF2,NGEF"
TCGA.AA.A00F.01A	2	233710420	234183270	30	0.0883	NEUTRAL	NA	6	"ATG16L1,C2orf82,GIGYF2,INPP5D,NEU2,NGEF"
TCGA.AM.5820	2	233777858	238398521	1792	0.12	NEUTRAL	NA	31	"ACKR3,AGAP1,ARL4C,ASB18,ATG16L1,COL6A3,COPS8,DGKD,DNAJB3,GBX2,HJURP,INPP5D,IQCA1,MLPH,MROH2A,NEU2,NGEF,SAG,SH3BP4,SPP2,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.D5.5538	2	233785014	243048759	3108	-0.0368	NEUTRAL	NA	84	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG16L1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DGKD,DNAJB3,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,INPP5D,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU2,NEU4,NGEF,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SAG,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AG.4009.01A	2	233791707	238681452	303	0.0767	NEUTRAL	NA	34	"ACKR3,AGAP1,ARL4C,ASB18,ATG16L1,COL6A3,COPS8,DGKD,DNAJB3,GBX2,HJURP,INPP5D,IQCA1,LRRFIP1,MLPH,MROH2A,NEU2,NGEF,PRLH,RAB17,SAG,SH3BP4,SPP2,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.G4.6295	2	233977317	243048759	3033	0.2886	NEUTRAL	NA	82	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG16L1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DGKD,DNAJB3,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,INPP5D,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SAG,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A010.01A	2	234171728	234186187	9	-0.2534	NEUTRAL	NA	1	ATG16L1
TCGA.AA.A00Q.01A	2	234171728	237074506	130	-0.4377	NEUTRAL	NA	22	"AGAP1,ARL4C,ATG16L1,DGKD,DNAJB3,GBX2,HJURP,MROH2A,SAG,SH3BP4,SPP2,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A00F.01A	2	234186187	234202849	8	-0.2144	NEUTRAL	NA	1	ATG16L1
TCGA.AA.A010.01A	2	234189713	234229259	11	0.3655	NEUTRAL	NA	2	"ATG16L1,SAG"
TCGA.CK.5914.01A	2	234249016	234359518	20	-0.2173	NEUTRAL	NA	2	"DGKD,SAG"
TCGA.AA.A00F.01A	2	234250843	242800876	515	0.1272	NEUTRAL	NA	79	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DGKD,DNAJB3,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,SAG,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A010.01A	2	234294527	237032541	193	0.3395	NEUTRAL	NA	19	"AGAP1,ARL4C,DGKD,DNAJB3,HJURP,MROH2A,SH3BP4,SPP2,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3930.01A	2	234294527	238999802	368	0.0587	NEUTRAL	NA	33	"ACKR3,AGAP1,ARL4C,ASB18,COL6A3,COPS8,DGKD,DNAJB3,GBX2,HJURP,IQCA1,LRRFIP1,MLPH,MROH2A,PRLH,RAB17,RAMP1,RBM44,SCLY,SH3BP4,SPP2,TRPM8,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AG.3909.01A	2	234296828	234344934	6	-0.2748	NEUTRAL	NA	1	DGKD
TCGA.AA.A01C.01A	2	234296828	234350506	9	-0.3792	NEUTRAL	NA	1	DGKD
TCGA.AA.A01C.01A	2	234354222	234389799	19	0.1388	NEUTRAL	NA	2	"DGKD,USP40"
TCGA.CK.5914.01A	2	234365840	234394128	13	-0.0358	NEUTRAL	NA	2	"DGKD,USP40"
TCGA.AA.A01Q.01A	2	234377992	238451159	151	-0.0167	NEUTRAL	NA	26	"ACKR3,AGAP1,ARL4C,ASB18,COL6A3,COPS8,DGKD,DNAJB3,GBX2,HJURP,IQCA1,MLPH,MROH2A,SH3BP4,SPP2,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AG.A025.01A	2	234377992	242813848	578	-0.2225	NEUTRAL	NA	79	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DGKD,DNAJB3,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AG.3909.01A	2	234386016	234621617	39	0.2023	NEUTRAL	NA	6	"UGT1A10,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.CK.5914.01A	2	234394361	234396828	3	0.2958	NEUTRAL	NA	1	USP40
TCGA.AA.A01C.01A	2	234397993	242813848	561	0.0276	NEUTRAL	NA	78	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DNAJB3,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3850	2	234400366	234597565	53	-0.19465	NEUTRAL	NA	5	"UGT1A10,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3844	2	234400366	234943591	257	-0.0484	NEUTRAL	NA	14	"DNAJB3,HJURP,MROH2A,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3941	2	234400366	234948683	257	0.2383	NEUTRAL	NA	14	"DNAJB3,HJURP,MROH2A,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.CK.5914.01A	2	234450912	234526315	8	0.2041	NEUTRAL	NA	2	"UGT1A8,USP40"
TCGA.AA.3850	2	234598990	234918390	186	0.18965	NEUTRAL	NA	13	"DNAJB3,HJURP,MROH2A,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.CK.5914.01A	2	234601602	237233322	136	0.1657	NEUTRAL	NA	20	"AGAP1,ARL4C,ASB18,DNAJB3,GBX2,HJURP,IQCA1,MROH2A,SH3BP4,SPP2,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.AG.A01N.01A	2	234601602	242813848	512	-0.2046	NEUTRAL	NA	77	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DNAJB3,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.A6.6653	2	234651799	242151584	2715	-0.0439	NEUTRAL	NA	63	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,C2orf54,CAPN10,COL6A3,COPS8,DNAJB3,DUSP28,ESPNL,FAM132B,GBX2,GPC1,GPR35,HDAC4,HES6,HJURP,ILKAP,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PASK,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,SCLY,SH3BP4,SNED1,SPP2,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.T9.A92H	2	234663044	243048759	2839	-0.0188	NEUTRAL	NA	76	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.AA.A00L.01A	2	234668912	234869383	29	-0.2651	NEUTRAL	NA	12	"HJURP,MROH2A,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.AG.3909.01A	2	234758360	238006244	92	-0.2006	NEUTRAL	NA	11	"ACKR3,AGAP1,ARL4C,ASB18,COPS8,GBX2,HJURP,IQCA1,SH3BP4,SPP2,TRPM8"
TCGA.AA.A00N.01A	2	234762434	234858582	11	0.2226	NEUTRAL	NA	2	"HJURP,TRPM8"
TCGA.G4.6322	2	234886362	243048759	2713	-0.0498	NEUTRAL	NA	65	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F"
TCGA.AA.A00L.01A	2	234915450	242800876	460	-0.315	NEUTRAL	NA	64	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F"
TCGA.AA.3850	2	234923880	234963082	26	-0.41985	NEUTRAL	NA	2	"SPP2,TRPM8"
TCGA.AA.A00N.01A	2	234959372	237374106	66	0.0821	NEUTRAL	NA	7	"AGAP1,ARL4C,ASB18,GBX2,IQCA1,SH3BP4,SPP2"
TCGA.AA.3530	2	234963082	243048759	2655	0.2049	NEUTRAL	NA	64	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3844	2	234963082	243048759	2659	0.1216	NEUTRAL	NA	64	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3811	2	234963440	237729466	1036	0.2681	NEUTRAL	NA	8	"ACKR3,AGAP1,ARL4C,ASB18,GBX2,IQCA1,SH3BP4,SPP2"
TCGA.AA.3850	2	234963440	237801294	1083	0.31455	NEUTRAL	NA	8	"ACKR3,AGAP1,ARL4C,ASB18,GBX2,IQCA1,SH3BP4,SPP2"
TCGA.5M.AAT5	2	235712371	243048759	2305	-0.0169	NEUTRAL	NA	62	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SH3BP4,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3660	2	236035290	243048759	2192	-0.0332	NEUTRAL	NA	61	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AG.3885	2	236068094	243048759	2178	-0.0089	NEUTRAL	NA	61	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.A01S	2	236188645	239218348	1043	0.16075	NEUTRAL	NA	21	"ACKR3,AGAP1,ASB18,COL6A3,COPS8,ESPNL,FAM132B,GBX2,HES6,ILKAP,IQCA1,KLHL30,LRRFIP1,MLPH,PER2,PRLH,RAB17,RAMP1,RBM44,SCLY,UBE2F"
TCGA.F4.6460	2	236422506	237354757	258	-0.4124	NEUTRAL	NA	4	"AGAP1,ASB18,GBX2,IQCA1"
TCGA.BM.6198	2	236470861	236514768	12	-0.09145	NEUTRAL	NA	1	AGAP1
TCGA.BM.6198	2	236543710	243048759	1969	-0.00085	NEUTRAL	NA	61	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.DM.A1D4	2	236696661	243048759	1922	-0.0376	NEUTRAL	NA	61	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AY.5543	2	236882541	243048759	1850	-0.0658	NEUTRAL	NA	61	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.CM.6675	2	236911465	243048759	1851	-0.0006	NEUTRAL	NA	61	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.CM.6165.01A	2	237103468	242842428	719	-0.048	NEUTRAL	NA	59	"ACKR3,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ASB18,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.CK.5914.01A	2	237239965	237998455	28	-0.4043	NEUTRAL	NA	3	"ACKR3,COPS8,IQCA1"
TCGA.CM.4747	2	237247322	243048759	1763	-0.4962	NEUTRAL	NA	58	"ACKR3,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.DM.A1D7	2	237354757	243048759	1751	-0.0947	NEUTRAL	NA	58	"ACKR3,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.A6.2686	2	237453805	243048759	1728	-0.0536	NEUTRAL	NA	57	"ACKR3,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.A00Q.01A	2	237489062	242800876	423	-0.2908	NEUTRAL	NA	56	"ACKR3,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.EI.6917	2	237545440	243048759	1694	-0.1222	NEUTRAL	NA	56	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.F4.6460	2	237629315	243048759	1666	-0.4454	NEUTRAL	NA	56	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3811	2	237729645	237986236	142	-0.4683	NEUTRAL	NA	0	None
TCGA.F5.6812	2	237736560	243048759	1611	-0.0321	NEUTRAL	NA	56	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3850	2	237807508	238010273	94	0.27335	NEUTRAL	NA	1	COPS8
TCGA.AA.3941	2	237807508	238010273	94	0.36	NEUTRAL	NA	1	COPS8
TCGA.AA.3693	2	237823962	243048759	1556	-0.0712	NEUTRAL	NA	56	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3811	2	237995980	243048759	1478	0.3122	NEUTRAL	NA	56	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.A010.01A	2	238002681	238234152	8	-0.0299	NEUTRAL	NA	2	"COL6A3,COPS8"
TCGA.AA.3850	2	238027638	243048759	1467	0.36095	NEUTRAL	NA	55	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AG.A01W.01A	2	238139917	238151340	6	-0.4386	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	238159332	238386930	28	0.2035	NEUTRAL	NA	1	COL6A3
TCGA.AA.3818	2	238168499	240662812	837	-0.0526	NEUTRAL	NA	19	"ASB1,COL6A3,ESPNL,FAM132B,HDAC4,HES6,ILKAP,KLHL30,LRRFIP1,MLPH,PER2,PRLH,RAB17,RAMP1,RBM44,SCLY,TRAF3IP1,TWIST2,UBE2F"
TCGA.CM.5863	2	238194121	243048759	1413	0.2723	NEUTRAL	NA	55	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AG.3909.01A	2	238265909	242021055	299	-0.2461	NEUTRAL	NA	37	"AGXT,ANKMY1,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,COL6A3,DUSP28,ESPNL,FAM132B,GPC1,GPR35,HDAC4,HES6,ILKAP,KIF1A,KLHL30,LRRFIP1,MLPH,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PER2,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,SCLY,SNED1,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.A010.01A	2	238303179	238636447	44	0.3085	NEUTRAL	NA	5	"COL6A3,LRRFIP1,MLPH,PRLH,RAB17"
TCGA.AF.A56K	2	238352897	238397371	21	0.0191	NEUTRAL	NA	1	MLPH
TCGA.AF.A56K	2	238398507	243048759	1324	0.0545	NEUTRAL	NA	54	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AM.5820	2	238400701	238570308	83	-0.367	NEUTRAL	NA	4	"LRRFIP1,MLPH,PRLH,RAB17"
TCGA.CK.5914.01A	2	238427143	238617139	28	0.1431	NEUTRAL	NA	4	"LRRFIP1,MLPH,PRLH,RAB17"
TCGA.AA.A01Q.01A	2	238455189	238976654	35	-0.3742	NEUTRAL	NA	8	"LRRFIP1,MLPH,PRLH,RAB17,RAMP1,RBM44,SCLY,UBE2F"
TCGA.AG.A01W.01A	2	238546453	238836286	58	0.3627	NEUTRAL	NA	3	"LRRFIP1,RAMP1,RBM44"
TCGA.AM.5820	2	238571030	241244111	890	0.2854	NEUTRAL	NA	21	"ASB1,ESPNL,FAM132B,HDAC4,HES6,ILKAP,KLHL30,LRRFIP1,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PER2,PRR21,RAMP1,RBM44,SCLY,TRAF3IP1,TWIST2,UBE2F"
TCGA.CK.5914.01A	2	238622809	238688014	25	-0.3023	NEUTRAL	NA	1	LRRFIP1
TCGA.AA.A00N.01A	2	238640916	238672715	14	0.338	NEUTRAL	NA	1	LRRFIP1
TCGA.AA.A01K.01A	2	238642353	242813848	294	-0.4613	NEUTRAL	NA	51	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRR21,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.A010.01A	2	238667332	238688014	9	0.2251	NEUTRAL	NA	1	LRRFIP1
TCGA.AA.3556	2	238669252	243048759	1195	-0.09	NEUTRAL	NA	51	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRR21,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3543	2	238670791	243048759	1179	-0.172	NEUTRAL	NA	51	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRR21,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AH.6544	2	238676721	243048759	1193	-0.0273	NEUTRAL	NA	51	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRR21,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.AG.4009.01A	2	238682959	239098447	45	-0.3636	NEUTRAL	NA	9	"ESPNL,FAM132B,ILKAP,KLHL30,LRRFIP1,RAMP1,RBM44,SCLY,UBE2F"
TCGA.CK.4948.01B	2	238688014	238742603	13	0.2519	NEUTRAL	NA	2	"LRRFIP1,RBM44"
TCGA.AA.3509.01A	2	238768243	239176659	83	-0.198	NEUTRAL	NA	9	"ESPNL,FAM132B,HES6,ILKAP,KLHL30,PER2,RAMP1,SCLY,UBE2F"
TCGA.AZ.4684.01A	2	238768243	242842428	560	-0.1519	NEUTRAL	NA	49	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRR21,RAMP1,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.CK.4948.01B	2	238768243	242842428	564	-0.169	NEUTRAL	NA	49	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRR21,RAMP1,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.CK.5914.01A	2	238785814	242155460	414	-0.2785	NEUTRAL	NA	35	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,DUSP28,ESPNL,FAM132B,GPC1,GPR35,HDAC4,HES6,ILKAP,KIF1A,KLHL30,MTERF4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PASK,PER2,PPP1R7,PRR21,RAMP1,RNPEPL1,SCLY,SNED1,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3967.01A	2	238820133	241418953	139	0.0806	NEUTRAL	NA	21	"ANKMY1,ASB1,ESPNL,FAM132B,GPC1,HDAC4,HES6,ILKAP,KLHL30,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PER2,PRR21,RAMP1,SCLY,TRAF3IP1,TWIST2,UBE2F"
TCGA.AG.A01W.01A	2	238838835	238911692	14	-0.2132	NEUTRAL	NA	1	UBE2F
TCGA.AA.A010.01A	2	238911957	239049354	31	-0.2368	NEUTRAL	NA	4	"ESPNL,KLHL30,SCLY,UBE2F"
TCGA.AA.A01Q.01A	2	238977896	239103379	28	0.0411	NEUTRAL	NA	5	"ESPNL,FAM132B,ILKAP,KLHL30,SCLY"
TCGA.AF.3914.01A	2	238999802	239256008	54	-0.1363	NEUTRAL	NA	8	"ESPNL,FAM132B,HES6,ILKAP,KLHL30,PER2,SCLY,TRAF3IP1"
TCGA.AA.3930.01A	2	239070208	239256008	51	0.1698	NEUTRAL	NA	5	"FAM132B,HES6,ILKAP,PER2,TRAF3IP1"
TCGA.AA.A02E.01A	2	239140500	242813848	260	0.0738	NEUTRAL	NA	42	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ING5,KIF1A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRR21,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2"
TCGA.AG.4009.01A	2	239147510	239988370	44	-0.3544	NEUTRAL	NA	6	"ASB1,HDAC4,HES6,PER2,TRAF3IP1,TWIST2"
TCGA.AG.A00C.01A	2	239147510	242619613	298	0.0105	NEUTRAL	NA	36	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,DTYMK,DUSP28,FARP2,GPC1,GPR35,HDAC4,HDLBP,HES6,KIF1A,MTERF4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PASK,PER2,PPP1R7,PRR21,RNPEPL1,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2"
TCGA.AA.A00N.01A	2	239160199	242021646	288	-0.4205	NEUTRAL	NA	23	"AGXT,ANKMY1,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,DUSP28,GPC1,GPR35,HDAC4,KIF1A,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PER2,PRR21,RNPEPL1,SNED1,TRAF3IP1,TWIST2"
TCGA.AA.A010.01A	2	239253086	241079391	75	0.2231	NEUTRAL	NA	10	"ASB1,HDAC4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PRR21,TRAF3IP1,TWIST2"
TCGA.AA.3939.01A	2	239253086	242156983	303	-0.3973	NEUTRAL	NA	26	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,DUSP28,GPC1,GPR35,HDAC4,KIF1A,MTERF4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PASK,PPP1R7,PRR21,RNPEPL1,SNED1,TRAF3IP1,TWIST2"
TCGA.AG.3906.01A	2	239256008	241494235	75	-0.3706	NEUTRAL	NA	12	"ANKMY1,ASB1,GPC1,HDAC4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PRR21,TRAF3IP1,TWIST2"
TCGA.AA.3930.01A	2	239257361	242168968	289	-0.1894	NEUTRAL	NA	27	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,DUSP28,GPC1,GPR35,HDAC4,HDLBP,KIF1A,MTERF4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PASK,PPP1R7,PRR21,RNPEPL1,SNED1,TRAF3IP1,TWIST2"
TCGA.AF.3914.01A	2	239257361	242430902	274	0.1813	NEUTRAL	NA	29	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,DUSP28,FARP2,GPC1,GPR35,HDAC4,HDLBP,KIF1A,MTERF4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PASK,PPP1R7,PRR21,RNPEPL1,SEPT2,SNED1,TRAF3IP1,TWIST2"
TCGA.DM.A28M.01A	2	239306092	240944582	48	-0.0789	NEUTRAL	NA	5	"ASB1,HDAC4,NDUFA10,TRAF3IP1,TWIST2"
TCGA.AG.3891.01A	2	239306092	242021646	157	-0.3264	NEUTRAL	NA	22	"AGXT,ANKMY1,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,DUSP28,GPC1,GPR35,HDAC4,KIF1A,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PRR21,RNPEPL1,SNED1,TRAF3IP1,TWIST2"
TCGA.AA.3509.01A	2	239306092	242192761	332	-0.1292	NEUTRAL	NA	27	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,DUSP28,GPC1,GPR35,HDAC4,HDLBP,KIF1A,MTERF4,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PASK,PPP1R7,PRR21,RNPEPL1,SNED1,TRAF3IP1,TWIST2"
TCGA.AA.3941	2	239578454	239668989	38	0.121	NEUTRAL	NA	0	None
TCGA.AA.A01S	2	239593237	243048759	931	0.11175	NEUTRAL	NA	38	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,ING5,KIF1A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PPP1R7,PRR21,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4,TWIST2"
TCGA.AG.4009.01A	2	239990133	240922887	20	0.2869	NEUTRAL	NA	2	"HDAC4,NDUFA10"
TCGA.AA.3662	2	240678201	243048759	590	-0.0955	NEUTRAL	NA	36	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPC1,GPR35,HDLBP,ING5,KIF1A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PPP1R7,PRR21,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AA.3818	2	240678201	243048759	590	-0.0382	NEUTRAL	NA	36	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPC1,GPR35,HDLBP,ING5,KIF1A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PPP1R7,PRR21,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AG.4009.01A	2	240929443	241439820	31	-0.3179	NEUTRAL	NA	8	"ANKMY1,GPC1,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PRR21"
TCGA.DM.A28M.01A	2	241069287	242842428	398	-0.1215	NEUTRAL	NA	32	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPC1,GPR35,HDLBP,ING5,KIF1A,MTERF4,MYEOV2,NEU4,OTOS,PASK,PDCD1,PPP1R7,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AA.3848	2	241224193	241290363	32	-0.4217	NEUTRAL	NA	0	None
TCGA.AM.5820	2	241253859	241283553	6	-0.3364	NEUTRAL	NA	0	None
TCGA.AA.3848	2	241291164	243048759	343	-0.1142	NEUTRAL	NA	30	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPC1,GPR35,HDLBP,ING5,KIF1A,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.A6.3810.01A	2	241375319	241405428	15	-0.2194	NEUTRAL	NA	1	GPC1
TCGA.A6.3810.01A	2	241418953	241465599	14	0.3574	NEUTRAL	NA	1	ANKMY1
TCGA.AA.A010.01A	2	241420315	241468417	14	0.0726	NEUTRAL	NA	1	ANKMY1
TCGA.AA.3967.01A	2	241420315	242026748	110	-0.3002	NEUTRAL	NA	11	"AGXT,ANKMY1,AQP12A,AQP12B,C2orf54,CAPN10,DUSP28,GPR35,KIF1A,RNPEPL1,SNED1"
TCGA.AG.4009.01A	2	241446929	241468417	8	0.1329	NEUTRAL	NA	1	ANKMY1
TCGA.A6.3810.01A	2	241468417	242842428	369	0.0129	NEUTRAL	NA	29	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPR35,HDLBP,ING5,KIF1A,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AG.4009.01A	2	241515935	241686599	24	-0.295	NEUTRAL	NA	6	"AQP12A,AQP12B,CAPN10,GPR35,KIF1A,RNPEPL1"
TCGA.AG.3906.01A	2	241528712	242151482	116	-0.2071	NEUTRAL	NA	12	"AGXT,ANO7,AQP12A,AQP12B,C2orf54,CAPN10,GPR35,KIF1A,MTERF4,PASK,PPP1R7,SNED1"
TCGA.AA.A01Q.01A	2	241555788	242021646	24	-0.4698	NEUTRAL	NA	7	"AGXT,AQP12A,AQP12B,C2orf54,GPR35,KIF1A,SNED1"
TCGA.AG.A015.01A	2	241555788	242813848	178	-0.1165	NEUTRAL	NA	25	"AGXT,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,D2HGDH,DTYMK,FARP2,GAL3ST2,GPR35,HDLBP,ING5,KIF1A,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AA.3544	2	241644933	243048759	266	0.085	NEUTRAL	NA	22	"AGXT,ANO7,ATG4B,BOK,C2orf54,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,KIF1A,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AA.3875	2	241655543	242021215	77	0.1063	NEUTRAL	NA	4	"AGXT,C2orf54,KIF1A,SNED1"
TCGA.AA.A010.01A	2	241656711	241907509	87	-0.3007	NEUTRAL	NA	3	"AGXT,C2orf54,KIF1A"
TCGA.AG.4009.01A	2	241710371	242178990	95	-0.1275	NEUTRAL	NA	9	"AGXT,ANO7,C2orf54,HDLBP,KIF1A,MTERF4,PASK,PPP1R7,SNED1"
TCGA.CA.5254	2	241733661	243048759	249	-0.08	NEUTRAL	NA	22	"AGXT,ANO7,ATG4B,BOK,C2orf54,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,KIF1A,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AG.A01W.01A	2	241817633	241843093	17	0.0147	NEUTRAL	NA	2	"AGXT,C2orf54"
TCGA.AG.A01W.01A	2	241843444	241914060	8	-0.4008	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	2	241923171	242024502	20	0.075	NEUTRAL	NA	1	SNED1
TCGA.AA.A010.01A	2	241969671	242130541	74	-0.2165	NEUTRAL	NA	5	"ANO7,MTERF4,PASK,PPP1R7,SNED1"
TCGA.A6.2684	2	241978471	243048759	178	-0.0669	NEUTRAL	NA	19	"ANO7,ATG4B,BOK,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AM.5820	2	242025881	242134856	52	0.0946	NEUTRAL	NA	5	"ANO7,MTERF4,PASK,PPP1R7,SNED1"
TCGA.AA.3875	2	242025881	243048759	187	-0.3935	NEUTRAL	NA	19	"ANO7,ATG4B,BOK,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AG.3891.01A	2	242026748	242617815	136	0.0404	NEUTRAL	NA	13	"ANO7,ATG4B,BOK,DTYMK,FARP2,HDLBP,MTERF4,PASK,PPP1R7,SEPT2,SNED1,STK25,THAP4"
TCGA.AA.3967.01A	2	242027698	242813848	170	0.0088	NEUTRAL	NA	19	"ANO7,ATG4B,BOK,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.AA.A00N.01A	2	242041581	242089857	21	-0.3718	NEUTRAL	NA	3	"MTERF4,PASK,PPP1R7"
TCGA.AG.3909.01A	2	242054310	242092863	14	-0.1679	NEUTRAL	NA	2	"PASK,PPP1R7"
TCGA.AA.A00N.01A	2	242105711	242195967	47	-0.2293	NEUTRAL	NA	3	"ANO7,HDLBP,PPP1R7"
TCGA.AG.3909.01A	2	242105711	242615495	105	-0.0201	NEUTRAL	NA	10	"ANO7,ATG4B,BOK,DTYMK,FARP2,HDLBP,PPP1R7,SEPT2,STK25,THAP4"
TCGA.CK.5914.01A	2	242156983	242195967	25	0.185	NEUTRAL	NA	2	"ANO7,HDLBP"
TCGA.AA.3939.01A	2	242162554	242842428	143	-0.1502	NEUTRAL	NA	15	"ANO7,ATG4B,BOK,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,NEU4,PDCD1,RTP5,SEPT2,STK25,THAP4"
TCGA.AM.5820	2	242173881	243048759	126	0.1874	NEUTRAL	NA	14	"ATG4B,BOK,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,NEU4,PDCD1,RTP5,SEPT2,STK25,THAP4"
TCGA.A6.6653	2	242217626	243048759	115	-0.0497	NEUTRAL	NA	14	"ATG4B,BOK,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,NEU4,PDCD1,RTP5,SEPT2,STK25,THAP4"
TCGA.AG.3906.01A	2	242285521	242403258	19	-8.00E-04	NEUTRAL	NA	2	"FARP2,SEPT2"
TCGA.AA.A02J.01A	2	242285521	242813848	51	-0.4183	NEUTRAL	NA	13	"ATG4B,BOK,D2HGDH,DTYMK,FARP2,GAL3ST2,ING5,NEU4,PDCD1,RTP5,SEPT2,STK25,THAP4"
TCGA.CK.5914.01A	2	242289480	242545690	46	0.1106	NEUTRAL	NA	5	"BOK,FARP2,SEPT2,STK25,THAP4"
TCGA.AA.A00N.01A	2	242312501	242438355	33	0.2404	NEUTRAL	NA	2	"FARP2,STK25"
TCGA.AG.4009.01A	2	242343204	242545690	41	-0.0708	NEUTRAL	NA	4	"BOK,FARP2,STK25,THAP4"
TCGA.AA.3509.01A	2	242375833	242842428	96	-0.1863	NEUTRAL	NA	12	"ATG4B,BOK,D2HGDH,DTYMK,FARP2,GAL3ST2,ING5,NEU4,PDCD1,RTP5,STK25,THAP4"
TCGA.AA.3930.01A	2	242407513	242501724	20	-0.1834	NEUTRAL	NA	3	"BOK,FARP2,STK25"
TCGA.AG.3906.01A	2	242407513	242545690	25	-0.3402	NEUTRAL	NA	4	"BOK,FARP2,STK25,THAP4"
TCGA.AA.A010.01A	2	242415232	242545690	27	-0.1269	NEUTRAL	NA	4	"BOK,FARP2,STK25,THAP4"
TCGA.AF.3914.01A	2	242433371	242625142	33	0.0876	NEUTRAL	NA	6	"ATG4B,BOK,DTYMK,FARP2,STK25,THAP4"
TCGA.AA.3930.01A	2	242509492	242707094	44	0.1982	NEUTRAL	NA	6	"ATG4B,BOK,D2HGDH,DTYMK,ING5,THAP4"
TCGA.AG.4009.01A	2	242572285	242625142	11	-0.428	NEUTRAL	NA	3	"ATG4B,DTYMK,THAP4"
TCGA.CK.5914.01A	2	242674603	242842428	34	-0.1293	NEUTRAL	NA	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AG.3906.01A	2	242680386	242813848	18	-0.0451	NEUTRAL	NA	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AF.3914.01A	2	242681816	242813848	21	0.1643	NEUTRAL	NA	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AG.4009.01A	2	242681816	242813848	18	-0.3323	NEUTRAL	NA	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AG.3891.01A	2	242682995	242695247	6	0.1123	NEUTRAL	NA	1	D2HGDH
TCGA.AG.A00C.01A	2	242690613	242813848	8	-0.002	NEUTRAL	NA	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AG.3909.01A	2	242694498	242813848	13	0.0634	NEUTRAL	NA	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AA.3930.01A	2	242716298	242842428	22	-0.3558	NEUTRAL	NA	4	"GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AA.3867	2	243034518	243048759	2	-0.4974	NEUTRAL	NA	0	None
TCGA.F4.6459	3	70894	73722	5	-0.3903	NEUTRAL	NA	0	None
TCGA.AA.3966	3	70894	252067	106	-0.3768	NEUTRAL	NA	1	CHL1
TCGA.G4.6310	3	70894	310746	140	-0.0675	NEUTRAL	NA	1	CHL1
TCGA.AA.3811	3	70894	453328	241	-0.49	NEUTRAL	NA	1	CHL1
TCGA.AA.3867	3	70894	674170	319	-0.1068	NEUTRAL	NA	1	CHL1
TCGA.AF.2692	3	70894	723754	335	-0.3177	NEUTRAL	NA	1	CHL1
TCGA.A6.6653	3	70894	848801	377	-0.0468	NEUTRAL	NA	1	CHL1
TCGA.AA.3688	3	70894	848801	376	-0.0602	NEUTRAL	NA	1	CHL1
TCGA.CM.6163	3	70894	848801	375	-0.2583	NEUTRAL	NA	1	CHL1
TCGA.AG.A02N	3	70894	951366	423	-0.0884	NEUTRAL	NA	1	CHL1
TCGA.DY.A1DC	3	70894	1350193	632	-0.0211	NEUTRAL	NA	2	"CHL1,CNTN6"
TCGA.DM.A1HB	3	70894	1481175	713	-0.0771	NEUTRAL	NA	2	"CHL1,CNTN6"
TCGA.AA.3952	3	70894	2206172	1149	-0.0518	NEUTRAL	NA	3	"CHL1,CNTN4,CNTN6"
TCGA.A6.5660	3	70894	2229165	1152	-0.0709	NEUTRAL	NA	3	"CHL1,CNTN4,CNTN6"
TCGA.G4.6626	3	70894	2698681	1370	0.1278	NEUTRAL	NA	3	"CHL1,CNTN4,CNTN6"
TCGA.A6.5667	3	70894	2856722	1482	-0.1626	NEUTRAL	NA	3	"CHL1,CNTN4,CNTN6"
TCGA.F5.6863	3	70894	3295714	1764	-0.0346	NEUTRAL	NA	6	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,TRNT1"
TCGA.AA.3561	3	70894	3383020	1833	-0.0949	NEUTRAL	NA	6	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,TRNT1"
TCGA.AG.3882	3	70894	3383020	1833	-0.2536	NEUTRAL	NA	6	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,TRNT1"
TCGA.A6.5661	3	70894	3430195	1868	-0.0646	NEUTRAL	NA	6	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,TRNT1"
TCGA.AA.3529	3	70894	3459813	1878	-0.0156	NEUTRAL	NA	6	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,TRNT1"
TCGA.AZ.6601	3	70894	3796073	2109	-0.0299	NEUTRAL	NA	6	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,TRNT1"
TCGA.AG.3898	3	70894	3814009	2124	-0.0884	NEUTRAL	NA	6	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,TRNT1"
TCGA.AG.A026	3	70894	3900818	2167	0.0264	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.DM.A28F	3	70894	3991151	2214	-0.0308	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.AA.3833	3	70894	4094374	2273	-0.0119	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.EI.6508	3	70894	4129000	2292	0.0375	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.DM.A28H	3	70894	4212907	2323	-0.0278	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.AG.3732	3	70894	4289340	2357	0.0226	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.EI.6513	3	70894	4312734	2363	-0.0217	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.AZ.4682	3	70894	4319796	2370	-0.0624	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.AA.3982	3	70894	4342352	2379	-0.1562	NEUTRAL	NA	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.AA.3844	3	70894	4345765	2379	-0.4715	NEUTRAL	NA	8	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,TRNT1"
TCGA.AA.3518	3	70894	4404086	2404	-0.051	NEUTRAL	NA	9	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3864	3	70894	4446836	2428	-0.1552	NEUTRAL	NA	9	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.A6.6137	3	70894	4458250	2439	0.0263	NEUTRAL	NA	9	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AH.6897	3	70894	4477910	2452	-0.0445	NEUTRAL	NA	9	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3693	3	70894	5078254	2773	0.2769	NEUTRAL	NA	11	"BHLHE40,CHL1,CNTN4,CNTN6,CRBN,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.D5.6534	3	70894	5188431	2811	-0.1143	NEUTRAL	NA	12	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.DM.A1D6	3	70894	5360682	2880	0.0221	NEUTRAL	NA	13	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3956	3	70894	5949536	3187	-0.1124	NEUTRAL	NA	13	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AY.A71X	3	70894	5950547	3189	-0.0019	NEUTRAL	NA	13	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3872	3	70894	6198318	3319	-0.1133	NEUTRAL	NA	13	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3496	3	70894	6507289	3498	-0.0444	NEUTRAL	NA	13	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AZ.6608	3	70894	7085712	3747	0.3133	NEUTRAL	NA	14	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.CM.4752	3	70894	7268824	3859	-0.3496	NEUTRAL	NA	14	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.EI.7002	3	70894	7471067	3966	0.3388	NEUTRAL	NA	14	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AZ.4308	3	70894	8411942	4469	-0.0047	NEUTRAL	NA	14	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3530	3	70894	8570873	4550	-0.1577	NEUTRAL	NA	15	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.A6.2675	3	70894	8767641	4620	-0.2985	NEUTRAL	NA	16	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,SETMAR,SSUH2,SUMF1,TRNT1"
TCGA.G4.6303	3	70894	8883205	4736	0.1333	NEUTRAL	NA	18	"ARL8B,BHLHE40,CAV3,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,OXTR,SETMAR,SSUH2,SUMF1,TRNT1"
TCGA.AM.5820	3	70894	10354839	5261	0.0032	NEUTRAL	NA	49	"ARL8B,ARPC4,ARPC4-TTLL3,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,TADA3,TATDN2,THUMPD3,TRNT1,TTLL3,VHL"
TCGA.AF.A56K	3	70894	10369179	5252	0.027	NEUTRAL	NA	50	"ARL8B,ARPC4,ARPC4-TTLL3,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,TADA3,TATDN2,THUMPD3,TRNT1,TTLL3,VHL"
TCGA.G4.6295	3	70894	11039959	5629	-1.00E-04	NEUTRAL	NA	52	"ARL8B,ARPC4,ARPC4-TTLL3,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,TADA3,TATDN2,THUMPD3,TRNT1,TTLL3,VHL"
TCGA.F4.6570	3	70894	11405926	5747	-0.0031	NEUTRAL	NA	54	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,TADA3,TATDN2,THUMPD3,TRNT1,TTLL3,VHL"
TCGA.AA.3848	3	70894	11593012	5783	-0.0913	NEUTRAL	NA	54	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,TADA3,TATDN2,THUMPD3,TRNT1,TTLL3,VHL"
TCGA.AU.3779	3	70894	11922556	5928	0.046	NEUTRAL	NA	56	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,TADA3,TAMM41,TATDN2,THUMPD3,TRNT1,TTLL3,VGLL4,VHL"
TCGA.5M.AATE	3	70894	11951281	5943	-0.0116	NEUTRAL	NA	56	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,TADA3,TAMM41,TATDN2,THUMPD3,TRNT1,TTLL3,VGLL4,VHL"
TCGA.EI.6514	3	70894	12086326	6007	-0.5031	NEUTRAL	NA	57	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TRNT1,TTLL3,VGLL4,VHL"
TCGA.AA.3977	3	70894	12112009	6016	-0.0571	NEUTRAL	NA	57	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TRNT1,TTLL3,VGLL4,VHL"
TCGA.CA.5254	3	70894	12299312	6049	0.3148	NEUTRAL	NA	58	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TRNT1,TTLL3,VGLL4,VHL"
TCGA.AA.3526	3	70894	12853006	6241	-0.0436	NEUTRAL	NA	65	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAND2,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MKRN2,MKRN2OS,MTMR14,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TRNT1,TSEN2,TTLL3,VGLL4,VHL"
TCGA.CM.6676	3	70894	13080975	6301	-0.0513	NEUTRAL	NA	67	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAND2,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MKRN2,MKRN2OS,MTMR14,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TRNT1,TSEN2,TTLL3,VGLL4,VHL"
TCGA.NH.A50T	3	70894	13209884	6341	-0.0059	NEUTRAL	NA	67	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAND2,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MKRN2,MKRN2OS,MTMR14,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TRNT1,TSEN2,TTLL3,VGLL4,VHL"
TCGA.AA.3560	3	70894	13877398	6659	0.1352	NEUTRAL	NA	71	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAND2,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,GHRL,GRM7,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MKRN2,MKRN2OS,MTMR14,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A"
TCGA.DC.4749	3	70894	14948701	7089	-0.0245	NEUTRAL	NA	80	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,C3orf20,CAMK1,CAND2,CAV3,CCDC174,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GHRL,GRIP2,GRM7,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,MKRN2,MKRN2OS,MTMR14,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.F5.6464	3	70894	17372759	7891	-0.019	NEUTRAL	NA	98	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,COLQ,CPNE9,CRBN,CRELD1,DAZL,DPH3,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PLCL2,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.D5.6929	3	70894	19131932	8257	-0.0434	NEUTRAL	NA	100	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,COLQ,CPNE9,CRBN,CRELD1,DAZL,DPH3,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC339862,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PLCL2,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SATB1,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.T9.A92H	3	70894	19277257	8283	-0.3026	NEUTRAL	NA	101	Too-Many
TCGA.WS.AB45	3	70894	19859261	8395	-0.0047	NEUTRAL	NA	101	Too-Many
TCGA.DM.A1D0	3	70894	19888047	8370	0.0032	NEUTRAL	NA	101	Too-Many
TCGA.A6.2686	3	70894	20390666	8543	-0.0523	NEUTRAL	NA	106	Too-Many
TCGA.CM.6680	3	70894	21357085	8869	0.0072	NEUTRAL	NA	106	Too-Many
TCGA.AA.3516	3	70894	22185518	9359	-0.0115	NEUTRAL	NA	107	Too-Many
TCGA.AD.6889	3	70894	22562517	9519	-0.0091	NEUTRAL	NA	107	Too-Many
TCGA.DC.6682	3	70894	22576403	9524	-0.4726	NEUTRAL	NA	107	Too-Many
TCGA.BM.6198	3	70894	24742307	10246	-0.43045	NEUTRAL	NA	113	Too-Many
TCGA.D5.6931	3	70894	25877476	10766	-0.0063	NEUTRAL	NA	117	Too-Many
TCGA.A6.6648	3	70894	25898494	10794	-0.0015	NEUTRAL	NA	117	Too-Many
TCGA.CM.5868	3	70894	26434294	10906	0.2029	NEUTRAL	NA	117	Too-Many
TCGA.AG.3893	3	70894	27114272	11105	-0.0737	NEUTRAL	NA	118	Too-Many
TCGA.AG.4008	3	70894	27114272	11102	-0.0096	NEUTRAL	NA	118	Too-Many
TCGA.CM.5860	3	70894	27114272	11172	-0.0061	NEUTRAL	NA	118	Too-Many
TCGA.DM.A28C	3	70894	31503031	12840	0.0094	NEUTRAL	NA	127	Too-Many
TCGA.G4.6322	3	70894	32913092	13312	0.007	NEUTRAL	NA	137	Too-Many
TCGA.A6.6138	3	70894	35233480	13902	-0.5145	NEUTRAL	NA	146	Too-Many
TCGA.AY.6196	3	70894	35370770	13794	-0.0897	NEUTRAL	NA	146	Too-Many
TCGA.DC.6155	3	70894	36009057	14085	-0.0158	NEUTRAL	NA	147	Too-Many
TCGA.DM.A1D9	3	70894	36074766	14150	-0.0421	NEUTRAL	NA	147	Too-Many
TCGA.D5.6530	3	70894	37977416	14805	-0.0066	NEUTRAL	NA	157	Too-Many
TCGA.G5.6641	3	70894	37982460	14771	0.2353	NEUTRAL	NA	157	Too-Many
TCGA.RU.A8FL	3	70894	38614246	14960	-0.0755	NEUTRAL	NA	169	Too-Many
TCGA.DM.A28A	3	70894	40054739	15424	-0.0233	NEUTRAL	NA	182	Too-Many
TCGA.AF.A56N	3	70894	40399916	15523	0.0285	NEUTRAL	NA	183	Too-Many
TCGA.AD.A5EK	3	70894	41397040	15760	-0.0396	NEUTRAL	NA	190	Too-Many
TCGA.AG.3581	3	70894	42391479	16154	-0.0042	NEUTRAL	NA	192	Too-Many
TCGA.AF.2693	3	70894	42408242	16167	-0.0065	NEUTRAL	NA	192	Too-Many
TCGA.AY.A69D	3	70894	42937676	16287	0.2542	NEUTRAL	NA	204	Too-Many
TCGA.F5.6864	3	70894	43559096	16465	0.3499	NEUTRAL	NA	210	Too-Many
TCGA.AF.2691	3	70894	44272965	16671	0.0228	NEUTRAL	NA	211	Too-Many
TCGA.AG.3580	3	70894	44285445	16684	-0.0107	NEUTRAL	NA	212	Too-Many
TCGA.NH.A8F8	3	70894	44403691	16694	0.0051	NEUTRAL	NA	213	Too-Many
TCGA.AA.3695	3	70894	46498864	17394	-0.0002	NEUTRAL	NA	245	Too-Many
TCGA.DM.A1DA	3	70894	46621792	17418	-0.1562	NEUTRAL	NA	248	Too-Many
TCGA.AG.3598	3	70894	48092016	17568	-0.0159	NEUTRAL	NA	269	Too-Many
TCGA.EI.6509	3	70894	48131576	17604	0.0103	NEUTRAL	NA	269	Too-Many
TCGA.DY.A1DG	3	70894	48440962	17642	0.0012	NEUTRAL	NA	275	Too-Many
TCGA.CM.6675	3	70894	49406094	17666	-0.0049	NEUTRAL	NA	311	Too-Many
TCGA.AD.6899	3	70894	51598253	17891	0.1593	NEUTRAL	NA	358	Too-Many
TCGA.AA.3514	3	70894	52208897	18000	-0.0006	NEUTRAL	NA	375	Too-Many
TCGA.AA.3511	3	70894	54194713	18489	-0.2827	NEUTRAL	NA	412	Too-Many
TCGA.DC.4745	3	70894	55927564	19369	0.3231	NEUTRAL	NA	415	Too-Many
TCGA.AG.4015	3	70894	57905706	19826	0.0021	NEUTRAL	NA	428	Too-Many
TCGA.AA.3660	3	70894	59190388	20218	0.0677	NEUTRAL	NA	439	Too-Many
TCGA.G4.6320	3	70894	59693728	20498	-0.0911	NEUTRAL	NA	439	Too-Many
TCGA.D5.6532	3	70894	59695593	20487	0.0038	NEUTRAL	NA	439	Too-Many
TCGA.AH.6544	3	70894	59726594	20483	-0.2742	NEUTRAL	NA	439	Too-Many
TCGA.DM.A0XD	3	70894	59737250	20435	-0.0019	NEUTRAL	NA	440	Too-Many
TCGA.AA.3715	3	70894	59740953	20529	-0.0164	NEUTRAL	NA	440	Too-Many
TCGA.AY.4070	3	70894	59788676	20473	-0.0897	NEUTRAL	NA	440	Too-Many
TCGA.AA.A01V	3	70894	59795924	20559	0.0031	NEUTRAL	NA	440	Too-Many
TCGA.AA.3866	3	70894	59811604	20578	-0.0692	NEUTRAL	NA	440	Too-Many
TCGA.A6.5659	3	70894	59823780	18833	-0.123	NEUTRAL	NA	440	Too-Many
TCGA.AY.5543	3	70894	59839049	20429	0.0029	NEUTRAL	NA	440	Too-Many
TCGA.AA.3663	3	70894	59849087	20556	-0.0124	NEUTRAL	NA	440	Too-Many
TCGA.F4.6569	3	70894	59849087	20600	0	NEUTRAL	NA	440	Too-Many
TCGA.CK.5913	3	70894	59849546	20568	-0.0016	NEUTRAL	NA	440	Too-Many
TCGA.AA.3492	3	70894	59887787	20612	-0.0037	NEUTRAL	NA	440	Too-Many
TCGA.D5.6930	3	70894	59904810	20613	0.0013	NEUTRAL	NA	440	Too-Many
TCGA.AA.3812	3	70894	59916313	20663	-0.0113	NEUTRAL	NA	440	Too-Many
TCGA.A6.2683	3	70894	59933790	20653	-0.2801	NEUTRAL	NA	440	Too-Many
TCGA.AA.A01R	3	70894	59939243	20664	-0.0021	NEUTRAL	NA	440	Too-Many
TCGA.AG.3592	3	70894	59970957	20713	0.3247	NEUTRAL	NA	440	Too-Many
TCGA.SS.A7HO	3	70894	59974884	20713	0.0225	NEUTRAL	NA	440	Too-Many
TCGA.AA.3949	3	70894	59980423	20717	0.0017	NEUTRAL	NA	440	Too-Many
TCGA.DY.A0XA	3	70894	59997111	20723	0.0076	NEUTRAL	NA	440	Too-Many
TCGA.D5.6533	3	70894	60009172	20699	-0.2352	NEUTRAL	NA	440	Too-Many
TCGA.DC.6681	3	70894	60013044	20727	0.1034	NEUTRAL	NA	440	Too-Many
TCGA.AA.3664	3	70894	60039487	20815	-0.0106	NEUTRAL	NA	440	Too-Many
TCGA.QG.A5YW	3	70894	60047720	20681	-0.0445	NEUTRAL	NA	440	Too-Many
TCGA.A6.5666	3	70894	60057159	20805	0.0113	NEUTRAL	NA	440	Too-Many
TCGA.AG.3881	3	70894	60067395	20838	-0.2923	NEUTRAL	NA	440	Too-Many
TCGA.AA.3543	3	70894	60073651	20824	0	NEUTRAL	NA	440	Too-Many
TCGA.F4.6856	3	70894	60089313	20826	-0.008	NEUTRAL	NA	440	Too-Many
TCGA.CM.5861	3	70894	60089377	20827	0.0024	NEUTRAL	NA	440	Too-Many
TCGA.G4.6299	3	70894	60103407	20863	-0.0169	NEUTRAL	NA	440	Too-Many
TCGA.CA.5797	3	70894	60120242	20857	-0.3572	NEUTRAL	NA	440	Too-Many
TCGA.G5.6233	3	70894	60123521	20888	-0.1248	NEUTRAL	NA	440	Too-Many
TCGA.AZ.4315	3	70894	60124186	20871	-0.0022	NEUTRAL	NA	440	Too-Many
TCGA.AD.6548	3	70894	60124387	20830	0	NEUTRAL	NA	440	Too-Many
TCGA.AA.3984	3	70894	60139368	20879	-0.0182	NEUTRAL	NA	440	Too-Many
TCGA.A6.4105	3	70894	60149058	20914	-0.2797	NEUTRAL	NA	440	Too-Many
TCGA.5M.AAT4	3	70894	60151951	20913	-0.306	NEUTRAL	NA	440	Too-Many
TCGA.AA.3845	3	70894	60151951	20878	-0.0082	NEUTRAL	NA	440	Too-Many
TCGA.CA.5255	3	70894	60178832	20871	-6.00E-04	NEUTRAL	NA	440	Too-Many
TCGA.A6.3809	3	70894	60189470	19171	-0.0035	NEUTRAL	NA	440	Too-Many
TCGA.G4.6309	3	70894	60189470	20890	-0.0115	NEUTRAL	NA	440	Too-Many
TCGA.A6.6780	3	70894	60197484	20883	-0.0127	NEUTRAL	NA	440	Too-Many
TCGA.AA.3831	3	70894	60197484	20902	-0.007	NEUTRAL	NA	440	Too-Many
TCGA.CM.4743	3	70894	60202748	20925	-0.0043	NEUTRAL	NA	440	Too-Many
TCGA.G4.6586	3	70894	60202748	20929	-0.0074	NEUTRAL	NA	440	Too-Many
TCGA.AG.3902	3	70894	60225408	20892	-0.0018	NEUTRAL	NA	440	Too-Many
TCGA.DM.A1DB	3	70894	60225511	20947	-0.0083	NEUTRAL	NA	440	Too-Many
TCGA.AG.3883	3	70894	60226253	20962	-0.0075	NEUTRAL	NA	440	Too-Many
TCGA.A6.3807	3	70894	60227391	20852	-0.3906	NEUTRAL	NA	440	Too-Many
TCGA.AY.A8YK	3	70894	60227391	20949	-0.0726	NEUTRAL	NA	440	Too-Many
TCGA.AA.A02Y	3	70894	60227591	20923	-0.0008	NEUTRAL	NA	440	Too-Many
TCGA.NH.A6GB	3	70894	60235255	20938	-0.0136	NEUTRAL	NA	440	Too-Many
TCGA.D5.7000	3	70894	60249861	20873	-0.0025	NEUTRAL	NA	440	Too-Many
TCGA.G4.6293	3	70894	60249861	20959	-0.0025	NEUTRAL	NA	440	Too-Many
TCGA.AA.A02O	3	70894	60250379	20943	-0.0041	NEUTRAL	NA	440	Too-Many
TCGA.AD.6890	3	70894	60250379	20941	-0.0102	NEUTRAL	NA	440	Too-Many
TCGA.AD.6964	3	70894	60262942	20945	-5.00E-04	NEUTRAL	NA	440	Too-Many
TCGA.EI.6917	3	70894	60263720	20925	-0.0084	NEUTRAL	NA	440	Too-Many
TCGA.CA.6717	3	70894	60263927	20883	0.0286	NEUTRAL	NA	440	Too-Many
TCGA.AF.5654	3	70894	60264381	20927	-0.0027	NEUTRAL	NA	440	Too-Many
TCGA.AA.A01P	3	70894	60279945	20946	-0.0007	NEUTRAL	NA	440	Too-Many
TCGA.CA.5256	3	70894	60280742	20821	-0.0556	NEUTRAL	NA	440	Too-Many
TCGA.AA.A01T	3	70894	60288427	20960	0.0714	NEUTRAL	NA	440	Too-Many
TCGA.F4.6460	3	70894	60288427	20989	-0.2739	NEUTRAL	NA	440	Too-Many
TCGA.D5.6927	3	70894	60290013	20955	-0.0192	NEUTRAL	NA	440	Too-Many
TCGA.AH.6643	3	70894	60308292	20953	0.0006	NEUTRAL	NA	440	Too-Many
TCGA.D5.6529	3	70894	60310426	20993	-0.2305	NEUTRAL	NA	440	Too-Many
TCGA.DM.A0X9	3	70894	60311681	20980	-0.0089	NEUTRAL	NA	440	Too-Many
TCGA.AU.6004	3	70894	60315725	20839	-0.0079	NEUTRAL	NA	440	Too-Many
TCGA.EI.6507	3	70894	60315725	20995	0.0044	NEUTRAL	NA	440	Too-Many
TCGA.AG.3599	3	70894	60323683	20998	-0.0122	NEUTRAL	NA	440	Too-Many
TCGA.AM.5821	3	70894	60326347	20951	0.0036	NEUTRAL	NA	440	Too-Many
TCGA.D5.6540	3	70894	60341701	20977	-0.0072	NEUTRAL	NA	440	Too-Many
TCGA.AD.6895	3	70894	60344189	20997	0.0016	NEUTRAL	NA	440	Too-Many
TCGA.AD.5900	3	70894	60351560	20994	-0.0023	NEUTRAL	NA	440	Too-Many
TCGA.AG.3728	3	70894	60372143	21048	-0.0544	NEUTRAL	NA	440	Too-Many
TCGA.AG.3892	3	70894	60372143	20972	-0.0021	NEUTRAL	NA	440	Too-Many
TCGA.AA.3869	3	70894	60379863	21029	-0.0047	NEUTRAL	NA	440	Too-Many
TCGA.AG.3742	3	70894	60379863	20910	-0.026	NEUTRAL	NA	440	Too-Many
TCGA.F5.6814	3	70894	60380258	21007	-0.0738	NEUTRAL	NA	440	Too-Many
TCGA.AA.3821	3	70894	60399153	21033	-0.0112	NEUTRAL	NA	440	Too-Many
TCGA.AZ.6607	3	70894	60399847	21016	-0.0714	NEUTRAL	NA	440	Too-Many
TCGA.AA.3510	3	70894	60414406	21052	-0.0031	NEUTRAL	NA	440	Too-Many
TCGA.G4.6294	3	70894	60417338	21080	-0.0009	NEUTRAL	NA	440	Too-Many
TCGA.D5.5538	3	70894	60418720	21065	-0.004	NEUTRAL	NA	440	Too-Many
TCGA.D5.5540	3	70894	60491102	21130	0.0089	NEUTRAL	NA	440	Too-Many
TCGA.QL.A97D	3	70894	60498171	21141	0	NEUTRAL	NA	440	Too-Many
TCGA.D5.6535	3	70894	60516255	21163	-0.3149	NEUTRAL	NA	440	Too-Many
TCGA.AA.A022	3	70894	60531241	21130	-0.0077	NEUTRAL	NA	440	Too-Many
TCGA.DY.A1DD	3	70894	60531296	21157	0.0125	NEUTRAL	NA	440	Too-Many
TCGA.A6.6782	3	70894	60535730	21088	0.057	NEUTRAL	NA	440	Too-Many
TCGA.AZ.6600	3	70894	60540089	21171	-0.2686	NEUTRAL	NA	440	Too-Many
TCGA.AA.3488	3	70894	60565144	21168	-0.4551	NEUTRAL	NA	440	Too-Many
TCGA.DY.A1H8	3	70894	60659566	21243	-0.0059	NEUTRAL	NA	440	Too-Many
TCGA.AD.6888	3	70894	60716036	21252	-0.0029	NEUTRAL	NA	440	Too-Many
TCGA.AA.3685	3	70894	60770569	21323	0.1742	NEUTRAL	NA	440	Too-Many
TCGA.AA.3558	3	70894	60829379	21343	-0.0148	NEUTRAL	NA	440	Too-Many
TCGA.CI.6621	3	70894	60920017	21327	-0.0273	NEUTRAL	NA	440	Too-Many
TCGA.CM.6677	3	70894	60925202	21306	-0.2565	NEUTRAL	NA	440	Too-Many
TCGA.CA.6716	3	70894	60931939	21347	-0.2723	NEUTRAL	NA	440	Too-Many
TCGA.CI.6623	3	70894	61026350	21401	0.0337	NEUTRAL	NA	440	Too-Many
TCGA.CM.6171	3	70894	61036457	21436	-0.0115	NEUTRAL	NA	440	Too-Many
TCGA.DC.6158	3	70894	61047400	21375	-0.0097	NEUTRAL	NA	440	Too-Many
TCGA.AZ.4616	3	70894	61106243	21434	-0.3382	NEUTRAL	NA	440	Too-Many
TCGA.EI.6512	3	70894	61124332	21501	-0.4032	NEUTRAL	NA	440	Too-Many
TCGA.CM.5344	3	70894	62114246	21926	-0.2099	NEUTRAL	NA	441	Too-Many
TCGA.AA.3696	3	70894	63108550	22395	-0.014	NEUTRAL	NA	444	Too-Many
TCGA.AG.3726	3	70894	65188452	23444	-0.0446	NEUTRAL	NA	451	Too-Many
TCGA.5M.AATA	3	70894	71107683	25658	0.0326	NEUTRAL	NA	466	Too-Many
TCGA.AG.3725	3	70894	75415862	27329	0.2076	NEUTRAL	NA	476	Too-Many
TCGA.EI.6885	3	70894	75531199	27308	-0.0028	NEUTRAL	NA	476	Too-Many
TCGA.CL.4957	3	70894	83208499	29191	-0.0075	NEUTRAL	NA	481	Too-Many
TCGA.A6.6651	3	70894	84054847	29170	-0.1533	NEUTRAL	NA	481	Too-Many
TCGA.CL.5917	3	70894	86199727	29672	0.0041	NEUTRAL	NA	482	Too-Many
TCGA.A6.6650	3	70894	86714605	27306	0.0039	NEUTRAL	NA	482	Too-Many
TCGA.D5.6922	3	70894	86733331	29802	0	NEUTRAL	NA	482	Too-Many
TCGA.AG.3612	3	70894	86831751	29716	0.1146	NEUTRAL	NA	482	Too-Many
TCGA.AF.3913	3	70894	86846777	29788	-0.0009	NEUTRAL	NA	482	Too-Many
TCGA.AA.3877	3	70894	88145069	30181	-0.0189	NEUTRAL	NA	487	Too-Many
TCGA.AA.3532	3	70894	89521663	30470	-0.1332	NEUTRAL	NA	490	Too-Many
TCGA.AA.3712	3	70894	90015492	30524	-0.3984	NEUTRAL	NA	490	Too-Many
TCGA.AF.3911	3	70894	90025021	30527	0.0004	NEUTRAL	NA	490	Too-Many
TCGA.AA.3666	3	70894	90283950	30557	0.058	NEUTRAL	NA	490	Too-Many
TCGA.AG.3885	3	70894	90283950	30554	-0.5038	NEUTRAL	NA	490	Too-Many
TCGA.DM.A288	3	70894	90283950	30458	0.0889	NEUTRAL	NA	490	Too-Many
TCGA.CK.6748	3	70894	99363984	31741	-0.42	NEUTRAL	NA	516	Too-Many
TCGA.A6.6140	3	70894	104664954	33085	0.3457	NEUTRAL	NA	536	Too-Many
TCGA.A6.6142	3	70894	105252376	33208	-0.3133	NEUTRAL	NA	537	Too-Many
TCGA.AA.3842	3	70894	106117208	33422	-0.0803	NEUTRAL	NA	538	Too-Many
TCGA.AA.A01S	3	70894	107467409	33786	-0.00115	NEUTRAL	NA	540	Too-Many
TCGA.AA.A01Z	3	70894	114272034	35808	-0.0084	NEUTRAL	NA	587	Too-Many
TCGA.F5.6810	3	70894	114820005	35883	-0.1003	NEUTRAL	NA	587	Too-Many
TCGA.F4.6461	3	70894	115435889	36045	-0.0336	NEUTRAL	NA	588	Too-Many
TCGA.A6.5656	3	70894	115942026	36111	-0.0013	NEUTRAL	NA	589	Too-Many
TCGA.AY.4071	3	70894	116096599	36139	0.2141	NEUTRAL	NA	589	Too-Many
TCGA.AG.3894	3	70894	116236363	36247	-5.00E-04	NEUTRAL	NA	589	Too-Many
TCGA.CM.6161	3	70894	116278508	36301	0.3279	NEUTRAL	NA	589	Too-Many
TCGA.AG.A020	3	70894	118156544	37015	0.0815	NEUTRAL	NA	589	Too-Many
TCGA.A6.A56B	3	70894	124445903	38741	0	NEUTRAL	NA	644	Too-Many
TCGA.AA.3819	3	70894	127890748	40023	-0.0217	NEUTRAL	NA	676	Too-Many
TCGA.F5.6812	3	70894	129309454	40218	0.0211	NEUTRAL	NA	697	Too-Many
TCGA.AF.6136	3	70894	129760621	40323	0.0046	NEUTRAL	NA	699	Too-Many
TCGA.CA.6719	3	70894	129760621	40263	-0.0149	NEUTRAL	NA	699	Too-Many
TCGA.F4.6463	3	70894	129760621	40370	0.0014	NEUTRAL	NA	699	Too-Many
TCGA.G4.6314	3	70894	129760621	40388	0.242	NEUTRAL	NA	699	Too-Many
TCGA.AA.3692	3	70894	129828077	40401	-0.0587	NEUTRAL	NA	700	Too-Many
TCGA.AD.6901	3	70894	129828077	40270	0.0405	NEUTRAL	NA	700	Too-Many
TCGA.G4.6297	3	70894	129848416	40379	0.0475	NEUTRAL	NA	700	Too-Many
TCGA.AG.A01Y	3	70894	132009880	40970	0.0064	NEUTRAL	NA	709	Too-Many
TCGA.EI.6884	3	70894	139530893	43003	0	NEUTRAL	NA	759	Too-Many
TCGA.AF.6672	3	70894	142846717	44052	0.2729	NEUTRAL	NA	779	Too-Many
TCGA.DM.A285	3	70894	144988129	44717	0.1473	NEUTRAL	NA	781	Too-Many
TCGA.DY.A1DF	3	70894	149544357	46144	-0.0502	NEUTRAL	NA	802	Too-Many
TCGA.F5.6702	3	70894	156705970	47947	0.1003	NEUTRAL	NA	837	Too-Many
TCGA.NH.A50U	3	70894	162949984	49808	0.0152	NEUTRAL	NA	863	Too-Many
TCGA.QG.A5YX	3	70894	168942338	50677	0.0361	NEUTRAL	NA	873	Too-Many
TCGA.AF.A56L	3	70894	173130572	52316	-0.0106	NEUTRAL	NA	899	Too-Many
TCGA.AA.3697	3	70894	174329348	52812	-0.2352	NEUTRAL	NA	899	Too-Many
TCGA.AA.3517	3	70894	174808331	52953	-0.315	NEUTRAL	NA	900	Too-Many
TCGA.D5.6536	3	70894	175425262	53239	-0.1548	NEUTRAL	NA	900	Too-Many
TCGA.AA.3556	3	70894	179363839	54149	0.0213	NEUTRAL	NA	911	Too-Many
TCGA.CM.6172	3	70894	184292054	55424	0.0163	NEUTRAL	NA	949	Too-Many
TCGA.AA.3680	3	70894	186018000	55890	-0.1108	NEUTRAL	NA	961	Too-Many
TCGA.AG.3896	3	70894	188844696	56849	0.3488	NEUTRAL	NA	980	Too-Many
TCGA.CA.6715	3	70894	192390776	58090	0	NEUTRAL	NA	993	Too-Many
TCGA.A6.2674	3	70894	194934633	59124	0.0243	NEUTRAL	NA	1007	Too-Many
TCGA.D5.6923	3	70894	196153828	59139	0.0189	NEUTRAL	NA	1020	Too-Many
TCGA.3L.AA1B	3	70894	197833757	59560	-0.0498	NEUTRAL	NA	1040	Too-Many
TCGA.4N.A93T	3	70894	197833757	59580	0.0196	NEUTRAL	NA	1040	Too-Many
TCGA.4T.AA8H	3	70894	197833757	59587	0.2253	NEUTRAL	NA	1040	Too-Many
TCGA.5M.AAT5	3	70894	197833757	59607	-0.1407	NEUTRAL	NA	1040	Too-Many
TCGA.5M.AAT6	3	70894	197833757	59588	-0.0007	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2671	3	70894	197833757	59558	0.0531	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2672	3	70894	197833757	59399	0.0219	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2677	3	70894	197833757	54512	0	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2678	3	70894	197833757	59581	-1.00E-04	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2679	3	70894	197833757	59555	-0.0475	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2680	3	70894	197833757	59525	0	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2681	3	70894	197833757	59576	-0.0622	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2682	3	70894	197833757	58537	-0.0172	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2684	3	70894	197833757	54493	0.007	NEUTRAL	NA	1040	Too-Many
TCGA.A6.2685	3	70894	197833757	59503	-0.006	NEUTRAL	NA	1040	Too-Many
TCGA.A6.4107	3	70894	197833757	59573	-0.1164	NEUTRAL	NA	1040	Too-Many
TCGA.A6.5657	3	70894	197833757	59457	0.0101	NEUTRAL	NA	1040	Too-Many
TCGA.A6.5662	3	70894	197833757	59438	0.0048	NEUTRAL	NA	1040	Too-Many
TCGA.A6.5664	3	70894	197833757	59460	0.0075	NEUTRAL	NA	1040	Too-Many
TCGA.A6.5665	3	70894	197833757	59469	0.0447	NEUTRAL	NA	1040	Too-Many
TCGA.A6.6141	3	70894	197833757	59565	0.0099	NEUTRAL	NA	1040	Too-Many
TCGA.A6.6649	3	70894	197833757	59613	0	NEUTRAL	NA	1040	Too-Many
TCGA.A6.6652	3	70894	197833757	59595	0	NEUTRAL	NA	1040	Too-Many
TCGA.A6.6654	3	70894	197833757	59440	-0.0401	NEUTRAL	NA	1040	Too-Many
TCGA.A6.6781	3	70894	197833757	54402	0.0123	NEUTRAL	NA	1040	Too-Many
TCGA.A6.A565	3	70894	197833757	59172	0.0089	NEUTRAL	NA	1040	Too-Many
TCGA.A6.A566	3	70894	197833757	59082	-0.0021	NEUTRAL	NA	1040	Too-Many
TCGA.A6.A567	3	70894	197833757	59120	0.0301	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3489	3	70894	197833757	59419	0	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3494	3	70894	197833757	59583	-0.0142	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3495	3	70894	197833757	59580	-0.0073	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3502	3	70894	197833757	59581	0.0026	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3522	3	70894	197833757	59581	0.0067	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3524	3	70894	197833757	59564	0.0021	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3527	3	70894	197833757	59585	0	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3531	3	70894	197833757	59588	0.0155	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3534	3	70894	197833757	59581	-0.0104	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3544	3	70894	197833757	59627	-0.0209	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3548	3	70894	197833757	59617	0.0036	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3549	3	70894	197833757	59622	0	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3555	3	70894	197833757	59625	-0.0028	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3655	3	70894	197833757	59598	0.002	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3662	3	70894	197833757	59596	-0.4665	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3673	3	70894	197833757	59634	0.0074	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3675	3	70894	197833757	59632	-0.0023	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3678	3	70894	197833757	59628	0.0008	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3681	3	70894	197833757	59622	-0.0115	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3684	3	70894	197833757	59632	-0.0105	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3710	3	70894	197833757	59546	-0.0014	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3713	3	70894	197833757	59581	0.005	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3814	3	70894	197833757	59633	-0.0231	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3818	3	70894	197833757	59630	-0.0066	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3837	3	70894	197833757	59639	0	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3841	3	70894	197833757	59637	0	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3846	3	70894	197833757	59554	-0.0204	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3851	3	70894	197833757	59515	-0.0104	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3852	3	70894	197833757	59633	0	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3854	3	70894	197833757	59641	-0.0046	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3855	3	70894	197833757	59539	-0.2553	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3856	3	70894	197833757	59630	0	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3858	3	70894	197833757	59631	0.0006	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3875	3	70894	197833757	59638	-0.0008	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3947	3	70894	197833757	59500	5.00E-04	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3950	3	70894	197833757	59567	-0.018	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3955	3	70894	197833757	59566	-0.0199	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3968	3	70894	197833757	59558	-0.2339	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3971	3	70894	197833757	59573	0.3268	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3973	3	70894	197833757	59570	-0.0203	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3975	3	70894	197833757	59511	-0.0135	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3976	3	70894	197833757	59567	0.2516	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3986	3	70894	197833757	59568	-0.0206	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3989	3	70894	197833757	59579	-0.2967	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3994	3	70894	197833757	59536	-0.0065	NEUTRAL	NA	1040	Too-Many
TCGA.AA.A01X	3	70894	197833757	59511	-0.0017	NEUTRAL	NA	1040	Too-Many
TCGA.AA.A03F	3	70894	197833757	59565	-0.0047	NEUTRAL	NA	1040	Too-Many
TCGA.AA.A03J	3	70894	197833757	58406	-0.001	NEUTRAL	NA	1040	Too-Many
TCGA.AD.6963	3	70894	197833757	59535	-0.0341	NEUTRAL	NA	1040	Too-Many
TCGA.AD.6965	3	70894	197833757	59489	0.0364	NEUTRAL	NA	1040	Too-Many
TCGA.AD.A5EJ	3	70894	197833757	59211	0.0037	NEUTRAL	NA	1040	Too-Many
TCGA.AF.2687	3	70894	197833757	59463	-0.0477	NEUTRAL	NA	1040	Too-Many
TCGA.AF.2689	3	70894	197833757	59578	-0.0017	NEUTRAL	NA	1040	Too-Many
TCGA.AF.2690	3	70894	197833757	59606	0.007	NEUTRAL	NA	1040	Too-Many
TCGA.AF.4110	3	70894	197833757	59590	-0.1926	NEUTRAL	NA	1040	Too-Many
TCGA.AF.6655	3	70894	197833757	59475	0.3211	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3574	3	70894	197833757	59619	-0.0102	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3575	3	70894	197833757	59626	0.0046	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3591	3	70894	197833757	59630	0.1534	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3594	3	70894	197833757	59611	0	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3602	3	70894	197833757	59396	-0.0001	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3731	3	70894	197833757	59624	-0.1152	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3878	3	70894	197833757	59633	-0.0151	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3887	3	70894	197833757	59368	0.0023	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3890	3	70894	197833757	59415	-0.0258	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3901	3	70894	197833757	59446	-0.0038	NEUTRAL	NA	1040	Too-Many
TCGA.AG.4022	3	70894	197833757	59623	0	NEUTRAL	NA	1040	Too-Many
TCGA.AH.6547	3	70894	197833757	59527	0.0078	NEUTRAL	NA	1040	Too-Many
TCGA.AH.6644	3	70894	197833757	59470	0	NEUTRAL	NA	1040	Too-Many
TCGA.AH.6903	3	70894	197833757	59490	0.0054	NEUTRAL	NA	1040	Too-Many
TCGA.AY.6386	3	70894	197833757	59574	0.0083	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.4323	3	70894	197833757	59372	0.0123	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.4615	3	70894	197833757	59572	0	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.4681	3	70894	197833757	59565	0	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.5403	3	70894	197833757	59507	0.0178	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.5407	3	70894	197833757	59604	0.0097	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.6598	3	70894	197833757	59618	0.0042	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.6599	3	70894	197833757	59619	0.0185	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.6603	3	70894	197833757	59480	0.1381	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.6605	3	70894	197833757	59409	0.0325	NEUTRAL	NA	1040	Too-Many
TCGA.AZ.6606	3	70894	197833757	59400	-0.0048	NEUTRAL	NA	1040	Too-Many
TCGA.CA.5796	3	70894	197833757	59494	0.0096	NEUTRAL	NA	1040	Too-Many
TCGA.CA.6718	3	70894	197833757	59397	0.0004	NEUTRAL	NA	1040	Too-Many
TCGA.CI.6619	3	70894	197833757	59505	-0.1274	NEUTRAL	NA	1040	Too-Many
TCGA.CI.6620	3	70894	197833757	59477	0.0129	NEUTRAL	NA	1040	Too-Many
TCGA.CI.6622	3	70894	197833757	59478	0.0043	NEUTRAL	NA	1040	Too-Many
TCGA.CI.6624	3	70894	197833757	59492	-0.0085	NEUTRAL	NA	1040	Too-Many
TCGA.CK.4947	3	70894	197833757	59531	0.0047	NEUTRAL	NA	1040	Too-Many
TCGA.CK.4950	3	70894	197833757	59089	0	NEUTRAL	NA	1040	Too-Many
TCGA.CK.4951	3	70894	197833757	59338	-0.0065	NEUTRAL	NA	1040	Too-Many
TCGA.CK.5912	3	70894	197833757	59439	0.0106	NEUTRAL	NA	1040	Too-Many
TCGA.CK.5915	3	70894	197833757	59494	0.123	NEUTRAL	NA	1040	Too-Many
TCGA.CK.5916	3	70894	197833757	59490	0.0052	NEUTRAL	NA	1040	Too-Many
TCGA.CK.6746	3	70894	197833757	59436	-0.0006	NEUTRAL	NA	1040	Too-Many
TCGA.CK.6747	3	70894	197833757	59374	0.0016	NEUTRAL	NA	1040	Too-Many
TCGA.CK.6751	3	70894	197833757	59277	0.0016	NEUTRAL	NA	1040	Too-Many
TCGA.CL.5918	3	70894	197833757	59481	0.0422	NEUTRAL	NA	1040	Too-Many
TCGA.CM.4746	3	70894	197833757	59565	0.0023	NEUTRAL	NA	1040	Too-Many
TCGA.CM.4747	3	70894	197833757	59568	0	NEUTRAL	NA	1040	Too-Many
TCGA.CM.4748	3	70894	197833757	59578	0.0009	NEUTRAL	NA	1040	Too-Many
TCGA.CM.5348	3	70894	197833757	59587	-0.0068	NEUTRAL	NA	1040	Too-Many
TCGA.CM.5349	3	70894	197833757	59586	0.0061	NEUTRAL	NA	1040	Too-Many
TCGA.CM.5863	3	70894	197833757	59500	-0.0374	NEUTRAL	NA	1040	Too-Many
TCGA.CM.5864	3	70894	197833757	59489	0	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6162	3	70894	197833757	59386	0.016	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6164	3	70894	197833757	59505	0.0057	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6166	3	70894	197833757	59605	0.0405	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6167	3	70894	197833757	59565	-0.0015	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6168	3	70894	197833757	59584	0.0081	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6169	3	70894	197833757	59228	-0.0315	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6170	3	70894	197833757	59605	0.0564	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6674	3	70894	197833757	59447	0.0049	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6678	3	70894	197833757	59461	-0.1469	NEUTRAL	NA	1040	Too-Many
TCGA.CM.6679	3	70894	197833757	59385	0.17445	NEUTRAL	NA	1040	Too-Many
TCGA.D5.5537	3	70894	197833757	59473	0.0074	NEUTRAL	NA	1040	Too-Many
TCGA.D5.5539	3	70894	197833757	59551	-0.0062	NEUTRAL	NA	1040	Too-Many
TCGA.D5.5541	3	70894	197833757	59600	-0.0068	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6537	3	70894	197833757	59203	0	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6538	3	70894	197833757	59584	-0.0094	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6539	3	70894	197833757	59475	0.1294	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6541	3	70894	197833757	59599	0.0012	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6898	3	70894	197833757	59496	0.0876	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6920	3	70894	197833757	59476	0.008	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6924	3	70894	197833757	59481	0.0625	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6926	3	70894	197833757	59504	0.0136	NEUTRAL	NA	1040	Too-Many
TCGA.D5.6928	3	70894	197833757	59488	0.001	NEUTRAL	NA	1040	Too-Many
TCGA.DC.5337	3	70894	197833757	59391	0.0021	NEUTRAL	NA	1040	Too-Many
TCGA.DC.5869	3	70894	197833757	59462	0.2162	NEUTRAL	NA	1040	Too-Many
TCGA.DC.6154	3	70894	197833757	59486	0.0016	NEUTRAL	NA	1040	Too-Many
TCGA.DC.6157	3	70894	197833757	59066	0	NEUTRAL	NA	1040	Too-Many
TCGA.DC.6683	3	70894	197833757	59472	0.0251	NEUTRAL	NA	1040	Too-Many
TCGA.DM.A0XF	3	70894	197833757	59582	0.0051	NEUTRAL	NA	1040	Too-Many
TCGA.DM.A1D4	3	70894	197833757	59588	0.0038	NEUTRAL	NA	1040	Too-Many
TCGA.DM.A1D7	3	70894	197833757	59598	0.0216	NEUTRAL	NA	1040	Too-Many
TCGA.DM.A1D8	3	70894	197833757	59515	0.0023	NEUTRAL	NA	1040	Too-Many
TCGA.DM.A280	3	70894	197833757	59465	-0.0093	NEUTRAL	NA	1040	Too-Many
TCGA.DM.A28E	3	70894	197833757	59458	0.0071	NEUTRAL	NA	1040	Too-Many
TCGA.DM.A28G	3	70894	197833757	59519	-0.0025	NEUTRAL	NA	1040	Too-Many
TCGA.DM.A28K	3	70894	197833757	59450	0.0071	NEUTRAL	NA	1040	Too-Many
TCGA.DT.5265	3	70894	197833757	59524	-0.277	NEUTRAL	NA	1040	Too-Many
TCGA.EF.5830	3	70894	197833757	59499	0.0011	NEUTRAL	NA	1040	Too-Many
TCGA.EI.6506	3	70894	197833757	59500	0.0057	NEUTRAL	NA	1040	Too-Many
TCGA.EI.6511	3	70894	197833757	59581	0.0071	NEUTRAL	NA	1040	Too-Many
TCGA.EI.6881	3	70894	197833757	59501	0.0291	NEUTRAL	NA	1040	Too-Many
TCGA.EI.6882	3	70894	197833757	59509	0.0085	NEUTRAL	NA	1040	Too-Many
TCGA.EI.6883	3	70894	197833757	59478	0.0033	NEUTRAL	NA	1040	Too-Many
TCGA.EI.7004	3	70894	197833757	59492	0	NEUTRAL	NA	1040	Too-Many
TCGA.F4.6703	3	70894	197833757	59497	-0.0522	NEUTRAL	NA	1040	Too-Many
TCGA.F4.6805	3	70894	197833757	59487	0.0146	NEUTRAL	NA	1040	Too-Many
TCGA.F4.6806	3	70894	197833757	59356	0	NEUTRAL	NA	1040	Too-Many
TCGA.F4.6807	3	70894	197833757	59436	0.006	NEUTRAL	NA	1040	Too-Many
TCGA.F4.6808	3	70894	197833757	59481	0.0265	NEUTRAL	NA	1040	Too-Many
TCGA.F4.6809	3	70894	197833757	59484	9.00E-04	NEUTRAL	NA	1040	Too-Many
TCGA.F4.6854	3	70894	197833757	59485	0.0286	NEUTRAL	NA	1040	Too-Many
TCGA.F4.6855	3	70894	197833757	59464	0	NEUTRAL	NA	1040	Too-Many
TCGA.F5.6465	3	70894	197833757	59632	0	NEUTRAL	NA	1040	Too-Many
TCGA.F5.6571	3	70894	197833757	59501	0.0467	NEUTRAL	NA	1040	Too-Many
TCGA.F5.6813	3	70894	197833757	59532	0.0062	NEUTRAL	NA	1040	Too-Many
TCGA.F5.6861	3	70894	197833757	59484	0.0015	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6298	3	70894	197833757	59599	0.003	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6302	3	70894	197833757	59585	0.0042	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6304	3	70894	197833757	59503	0.0085	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6306	3	70894	197833757	59595	0.004	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6307	3	70894	197833757	59603	-0.0003	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6311	3	70894	197833757	59603	0.0927	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6315	3	70894	197833757	59613	0.0184	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6317	3	70894	197833757	59587	-0.1006	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6321	3	70894	197833757	59600	0.0003	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6323	3	70894	197833757	59609	0.0826	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6588	3	70894	197833757	59609	0.0128	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6625	3	70894	197833757	59597	0.0304	NEUTRAL	NA	1040	Too-Many
TCGA.G4.6628	3	70894	197833757	59462	0.0041	NEUTRAL	NA	1040	Too-Many
TCGA.G5.6235	3	70894	197833757	59626	0.0019	NEUTRAL	NA	1040	Too-Many
TCGA.G5.6572	3	70894	197833757	59494	0.0022	NEUTRAL	NA	1040	Too-Many
TCGA.NH.A50V	3	70894	197833757	59189	0.0112	NEUTRAL	NA	1040	Too-Many
TCGA.NH.A5IV	3	70894	197833757	59461	-0.0087	NEUTRAL	NA	1040	Too-Many
TCGA.NH.A6GC	3	70894	197833757	59565	0.3292	NEUTRAL	NA	1040	Too-Many
TCGA.NH.A8F7	3	70894	197833757	59443	-0.052	NEUTRAL	NA	1040	Too-Many
TCGA.QG.A5YV	3	70894	197833757	59117	-0.3555	NEUTRAL	NA	1040	Too-Many
TCGA.QG.A5Z1	3	70894	197833757	59049	0.0396	NEUTRAL	NA	1040	Too-Many
TCGA.QG.A5Z2	3	70894	197833757	59129	0.0128	NEUTRAL	NA	1040	Too-Many
TCGA.AG.3583	3	71403	59821900	19991	-0.2989	NEUTRAL	NA	440	Too-Many
TCGA.AY.6197	3	71403	75439780	26739	-0.024	NEUTRAL	NA	476	Too-Many
TCGA.F4.6704	3	73788	37977416	14769	0.2445	NEUTRAL	NA	157	Too-Many
TCGA.F4.6459	3	73788	60391556	21050	-0.0179	NEUTRAL	NA	440	Too-Many
TCGA.AA.3966	3	252343	329444	56	0.042	NEUTRAL	NA	1	CHL1
TCGA.AA.3966	3	329969	1707029	714	-0.2742	NEUTRAL	NA	2	"CHL1,CNTN6"
TCGA.AG.A01W.01A	3	336409	2762160	49	0.1646	NEUTRAL	NA	3	"CHL1,CNTN4,CNTN6"
TCGA.AG.A036.01A	3	336409	52538170	3905	0.2135	NEUTRAL	NA	388	Too-Many
TCGA.F5.6811.01A	3	336417	29885306	1339	0.1832	NEUTRAL	NA	125	Too-Many
TCGA.CK.4952.01A	3	336417	198014238	10380	-0.112	NEUTRAL	NA	1041	Too-Many
TCGA.DC.6160.01A	3	336417	198014238	10380	0.0579	NEUTRAL	NA	1041	Too-Many
TCGA.G4.6310	3	356564	27471830	11087	-0.0344	NEUTRAL	NA	120	Too-Many
TCGA.AA.A02K.01A	3	361409	38076209	1795	-0.2729	NEUTRAL	NA	159	Too-Many
TCGA.AA.A00N.01A	3	361417	369808	3	-0.2599	NEUTRAL	NA	1	CHL1
TCGA.AG.3906.01A	3	361417	443294	25	-0.3091	NEUTRAL	NA	1	CHL1
TCGA.AA.A01Q.01A	3	361417	1339526	32	-0.1774	NEUTRAL	NA	2	"CHL1,CNTN6"
TCGA.CK.5914.01A	3	361417	1339526	32	-0.031	NEUTRAL	NA	2	"CHL1,CNTN6"
TCGA.CM.4750.01A	3	361417	3133853	74	-0.1366	NEUTRAL	NA	4	"CHL1,CNTN4,CNTN6,IL5RA"
TCGA.AA.A00F.01A	3	361417	3139532	69	-0.0072	NEUTRAL	NA	4	"CHL1,CNTN4,CNTN6,IL5RA"
TCGA.AG.A00C.01A	3	361417	3139532	76	-0.2464	NEUTRAL	NA	4	"CHL1,CNTN4,CNTN6,IL5RA"
TCGA.AG.3909.01A	3	361417	3144330	78	0.271	NEUTRAL	NA	4	"CHL1,CNTN4,CNTN6,IL5RA"
TCGA.AG.4009.01A	3	361417	4345037	101	-0.0107	NEUTRAL	NA	8	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,TRNT1"
TCGA.AA.A010.01A	3	361417	4345458	104	0.1458	NEUTRAL	NA	8	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,TRNT1"
TCGA.AA.A00L.01A	3	361417	4508613	109	-0.5023	NEUTRAL	NA	9	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.A00Q.01A	3	361417	4508613	109	-0.354	NEUTRAL	NA	9	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AG.A016.01A	3	361417	4706770	127	-0.1373	NEUTRAL	NA	10	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AF.3914.01A	3	361417	5214279	177	0.0928	NEUTRAL	NA	12	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AG.3611.01A	3	361417	8661503	156	-0.0584	NEUTRAL	NA	16	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,SETMAR,SSUH2,SUMF1,TRNT1"
TCGA.AG.3891.01A	3	361417	9055374	241	-0.1979	NEUTRAL	NA	20	"ARL8B,BHLHE40,CAV3,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,OXTR,RAD18,SETMAR,SRGAP3,SSUH2,SUMF1,TRNT1"
TCGA.AA.A017.01A	3	361417	9074297	239	0.0305	NEUTRAL	NA	20	"ARL8B,BHLHE40,CAV3,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,OXTR,RAD18,SETMAR,SRGAP3,SSUH2,SUMF1,TRNT1"
TCGA.AA.A029.01A	3	361417	9495376	277	-0.2025	NEUTRAL	NA	22	"ARL8B,BHLHE40,CAV3,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,OXTR,RAD18,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,THUMPD3,TRNT1"
TCGA.AA.A02F.01A	3	361417	9506061	263	0.1362	NEUTRAL	NA	22	"ARL8B,BHLHE40,CAV3,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,OXTR,RAD18,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,THUMPD3,TRNT1"
TCGA.AG.A014.01A	3	361417	9747065	305	-0.1428	NEUTRAL	NA	25	"ARL8B,BHLHE40,CAV3,CHL1,CNTN4,CNTN6,CPNE9,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LHFPL4,LMCD1,LRRN1,MTMR14,OXTR,RAD18,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,THUMPD3,TRNT1"
TCGA.AA.3967.01A	3	361417	9771190	326	-0.3086	NEUTRAL	NA	25	"ARL8B,BHLHE40,CAV3,CHL1,CNTN4,CNTN6,CPNE9,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LHFPL4,LMCD1,LRRN1,MTMR14,OXTR,RAD18,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,THUMPD3,TRNT1"
TCGA.AA.A01F.01A	3	361417	9979199	301	-0.3319	NEUTRAL	NA	38	"ARL8B,ARPC4,ARPC4-TTLL3,BHLHE40,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,GRM7,IL17RC,IL17RE,IL5RA,ITPR1,JAGN1,LHFPL4,LMCD1,LRRN1,MTMR14,OGG1,OXTR,RAD18,RPUSD3,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,TADA3,THUMPD3,TRNT1,TTLL3"
TCGA.AG.A015.01A	3	361417	9982557	404	-0.1994	NEUTRAL	NA	38	"ARL8B,ARPC4,ARPC4-TTLL3,BHLHE40,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,GRM7,IL17RC,IL17RE,IL5RA,ITPR1,JAGN1,LHFPL4,LMCD1,LRRN1,MTMR14,OGG1,OXTR,RAD18,RPUSD3,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,TADA3,THUMPD3,TRNT1,TTLL3"
TCGA.AG.A01L.01A	3	361417	9982557	405	0.1021	NEUTRAL	NA	38	"ARL8B,ARPC4,ARPC4-TTLL3,BHLHE40,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,GRM7,IL17RC,IL17RE,IL5RA,ITPR1,JAGN1,LHFPL4,LMCD1,LRRN1,MTMR14,OGG1,OXTR,RAD18,RPUSD3,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,TADA3,THUMPD3,TRNT1,TTLL3"
TCGA.AG.A00Y.01A	3	361417	15515426	902	0.2585	NEUTRAL	NA	88	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,COLQ,CPNE9,CRBN,CRELD1,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GHRL,GRIP2,GRM7,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AG.A023.01A	3	361417	15606006	888	-0.1215	NEUTRAL	NA	89	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,COLQ,CPNE9,CRBN,CRELD1,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.A01C.01A	3	361417	16306236	952	-0.0226	NEUTRAL	NA	93	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,COLQ,CPNE9,CRBN,CRELD1,DPH3,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.A6.3810.01A	3	361417	20081948	1140	-0.2266	NEUTRAL	NA	105	Too-Many
TCGA.DM.A28M.01A	3	361417	31641810	1379	-0.0959	NEUTRAL	NA	128	Too-Many
TCGA.AA.3861.01A	3	361417	33870292	1548	-0.0082	NEUTRAL	NA	146	Too-Many
TCGA.AA.3862.01A	3	361417	33870292	1557	-0.0171	NEUTRAL	NA	146	Too-Many
TCGA.AA.A00A.01A	3	361417	44827835	1763	-0.416	NEUTRAL	NA	223	Too-Many
TCGA.AA.A02E.01A	3	361417	47456021	2457	0.0816	NEUTRAL	NA	264	Too-Many
TCGA.AA.A00O.01A	3	361417	47883075	2499	-0.1141	NEUTRAL	NA	268	Too-Many
TCGA.AA.A02W.01A	3	361417	47963216	2551	0.0669	NEUTRAL	NA	269	Too-Many
TCGA.AG.A008.01A	3	361417	50103657	3101	0.1195	NEUTRAL	NA	330	Too-Many
TCGA.AA.A00J.01A	3	361417	50387953	2725	8.00E-04	NEUTRAL	NA	346	Too-Many
TCGA.AA.A02J.01A	3	361417	52448459	3205	-0.0687	NEUTRAL	NA	384	Too-Many
TCGA.CK.4948.01B	3	361417	56468350	4224	-0.083	NEUTRAL	NA	415	Too-Many
TCGA.AG.A00H.01A	3	361417	58389567	3955	0.0117	NEUTRAL	NA	433	Too-Many
TCGA.AA.A02H.01A	3	361417	58641187	3907	-0.3818	NEUTRAL	NA	438	Too-Many
TCGA.AA.A01K.01A	3	361417	73433229	4271	-0.3818	NEUTRAL	NA	475	Too-Many
TCGA.AA.3815.01A	3	361417	128616425	6834	-0.0133	NEUTRAL	NA	681	Too-Many
TCGA.CM.6165.01A	3	361417	151102801	8354	0.0225	NEUTRAL	NA	816	Too-Many
TCGA.AA.A00K.01A	3	361417	164699980	6905	-0.4066	NEUTRAL	NA	864	Too-Many
TCGA.AH.6549.01A	3	361417	174577118	9097	-0.4109	NEUTRAL	NA	900	Too-Many
TCGA.DM.A282.01A	3	361417	174577118	9108	-0.0058	NEUTRAL	NA	900	Too-Many
TCGA.AA.A01I.01A	3	361417	183585621	8678	-0.1287	NEUTRAL	NA	929	Too-Many
TCGA.AG.A01N.01A	3	361417	186970914	9181	-0.176	NEUTRAL	NA	975	Too-Many
TCGA.AA.A01D.01A	3	361417	197765401	9312	-0.0648	NEUTRAL	NA	1040	Too-Many
TCGA.AA.A024.01A	3	361417	197765401	9955	0.0134	NEUTRAL	NA	1040	Too-Many
TCGA.AA.A02R.01A	3	361417	197765401	9384	-0.0741	NEUTRAL	NA	1040	Too-Many
TCGA.AG.A011.01A	3	361417	197765401	9696	0.0471	NEUTRAL	NA	1040	Too-Many
TCGA.AG.A01J.01A	3	361417	197765401	9589	-0.0402	NEUTRAL	NA	1040	Too-Many
TCGA.AG.A025.01A	3	361417	197765401	9833	-0.0609	NEUTRAL	NA	1040	Too-Many
TCGA.AG.A02G.01A	3	361417	197765401	9729	-0.0882	NEUTRAL	NA	1040	Too-Many
TCGA.AG.A02X.01A	3	361417	197765401	9776	0.1705	NEUTRAL	NA	1040	Too-Many
TCGA.AG.A032.01A	3	361417	197765401	9505	-0.0915	NEUTRAL	NA	1040	Too-Many
TCGA.AA.3939.01A	3	361417	197896676	10458	-0.2268	NEUTRAL	NA	1041	Too-Many
TCGA.AA.3980.01A	3	361417	197896676	10487	-0.1491	NEUTRAL	NA	1041	Too-Many
TCGA.AY.A54L.01A	3	361417	197896676	10537	-0.0134	NEUTRAL	NA	1041	Too-Many
TCGA.CM.4744.01A	3	361417	197896676	10539	-0.0483	NEUTRAL	NA	1041	Too-Many
TCGA.A6.3808.01A	3	367590	9971478	413	0.2823	NEUTRAL	NA	37	"ARL8B,ARPC4,ARPC4-TTLL3,BHLHE40,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,EDEM1,GRM7,IL17RC,IL17RE,IL5RA,ITPR1,JAGN1,LHFPL4,LMCD1,LRRN1,MTMR14,OGG1,OXTR,RAD18,RPUSD3,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,TADA3,THUMPD3,TRNT1,TTLL3"
TCGA.AG.3906.01A	3	447161	17255662	994	0.0442	NEUTRAL	NA	98	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,COLQ,CPNE9,CRBN,CRELD1,DAZL,DPH3,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PLCL2,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.3519	3	518413	5400237	2629	-0.3433	NEUTRAL	NA	12	"ARL8B,BHLHE40,CNTN4,CNTN6,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.DM.A1HA	3	533257	16783432	7451	-0.036	NEUTRAL	NA	95	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,CNTN4,CNTN6,COLQ,CPNE9,CRBN,CRELD1,DAZL,DPH3,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AF.2692	3	728161	75415862	27018	-0.0558	NEUTRAL	NA	475	Too-Many
TCGA.AA.3867	3	728224	4094374	1937	-0.042	NEUTRAL	NA	6	"CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.CM.6163	3	864512	963380	48	-0.3052	NEUTRAL	NA	0	None
TCGA.A6.6653	3	864512	996670	57	0.0618	NEUTRAL	NA	0	None
TCGA.AA.3688	3	864512	119350323	37118	-0.0075	NEUTRAL	NA	599	Too-Many
TCGA.AG.A02N	3	963380	1635569	407	-0.0785	NEUTRAL	NA	1	CNTN6
TCGA.A6.6653	3	1007655	8738333	4207	-0.0116	NEUTRAL	NA	15	"ARL8B,BHLHE40,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,SETMAR,SSUH2,SUMF1,TRNT1"
TCGA.CM.6163	3	1039698	60512471	20626	-0.259	NEUTRAL	NA	439	Too-Many
TCGA.AA.3850	3	1175274	1298106	74	-0.33825	NEUTRAL	NA	1	CNTN6
TCGA.AA.3850	3	1311741	1350133	31	-0.19875	NEUTRAL	NA	1	CNTN6
TCGA.AA.A01Q.01A	3	1363304	2967264	18	-0.4032	NEUTRAL	NA	2	"CNTN4,CNTN6"
TCGA.DY.A1DC	3	1375563	1865886	309	-0.0094	NEUTRAL	NA	1	CNTN6
TCGA.CK.5914.01A	3	1413961	2928687	17	-0.0423	NEUTRAL	NA	2	"CNTN4,CNTN6"
TCGA.DM.A1HB	3	1497652	5113305	2025	-0.0311	NEUTRAL	NA	9	"BHLHE40,CNTN4,CRBN,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3966	3	1711547	60445252	20170	-0.2094	NEUTRAL	NA	438	Too-Many
TCGA.DY.A1DC	3	1895849	5234725	1835	0.0082	NEUTRAL	NA	11	"ARL8B,BHLHE40,CNTN4,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.A6.5660	3	2260433	6213116	2166	-0.041	NEUTRAL	NA	11	"ARL8B,BHLHE40,CNTN4,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3941	3	2370876	3805970	893	-0.1399	NEUTRAL	NA	4	"CNTN4,CRBN,IL5RA,TRNT1"
TCGA.AA.3850	3	2382936	3805970	887	-0.24095	NEUTRAL	NA	4	"CNTN4,CRBN,IL5RA,TRNT1"
TCGA.AA.3952	3	2472666	54345175	17338	-0.0115	NEUTRAL	NA	410	Too-Many
TCGA.AG.A02N	3	2675154	60326347	19638	-0.0333	NEUTRAL	NA	438	Too-Many
TCGA.G4.6626	3	2700314	2763878	51	-0.4534	NEUTRAL	NA	1	CNTN4
TCGA.G4.6626	3	2768541	19576940	6923	-0.0632	NEUTRAL	NA	99	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,CNTN4,COLQ,CPNE9,CRBN,CRELD1,DAZL,DPH3,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,KCNH8,LHFPL4,LMCD1,LOC339862,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PLCL2,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SATB1,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AG.A01W.01A	3	2836117	3161242	33	-0.1704	NEUTRAL	NA	2	"CNTN4,IL5RA"
TCGA.AA.A01Q.01A	3	3029977	9771190	185	0.0637	NEUTRAL	NA	23	"ARL8B,BHLHE40,CAV3,CNTN4,CPNE9,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LHFPL4,LMCD1,LRRN1,MTMR14,OXTR,RAD18,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,THUMPD3,TRNT1"
TCGA.A6.5667	3	3052401	97044478	29575	-0.1633	NEUTRAL	NA	494	Too-Many
TCGA.AZ.4684.01A	3	3076264	15685776	943	-0.0185	NEUTRAL	NA	88	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,CNTN4,COLQ,CPNE9,CRBN,CRELD1,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.CK.5914.01A	3	3116409	3146546	9	-0.4203	NEUTRAL	NA	1	IL5RA
TCGA.CM.4750.01A	3	3136943	87039716	4973	-0.5071	NEUTRAL	NA	480	Too-Many
TCGA.AA.A00F.01A	3	3143324	3197838	16	0.2734	NEUTRAL	NA	3	"CRBN,IL5RA,TRNT1"
TCGA.AG.A00C.01A	3	3143324	3216810	20	0.1171	NEUTRAL	NA	3	"CRBN,IL5RA,TRNT1"
TCGA.AA.A00D.01A	3	3146546	3216810	18	-0.2271	NEUTRAL	NA	3	"CRBN,IL5RA,TRNT1"
TCGA.AG.A01W.01A	3	3172839	4684025	35	0.1381	NEUTRAL	NA	6	"CRBN,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.CK.5914.01A	3	3192522	3216810	10	-0.3876	NEUTRAL	NA	1	CRBN
TCGA.AA.A00F.01A	3	3221242	5021344	28	0.0455	NEUTRAL	NA	6	"BHLHE40,CRBN,ITPR1,LRRN1,SETMAR,SUMF1"
TCGA.AG.A00C.01A	3	3221242	5021344	74	-0.1928	NEUTRAL	NA	6	"BHLHE40,CRBN,ITPR1,LRRN1,SETMAR,SUMF1"
TCGA.AA.3561	3	3383094	4207783	490	-0.4521	NEUTRAL	NA	1	LRRN1
TCGA.AG.3882	3	3385805	42545265	14396	-0.0824	NEUTRAL	NA	188	Too-Many
TCGA.A6.5661	3	3441440	8589905	2682	0.0754	NEUTRAL	NA	9	"ARL8B,BHLHE40,EDEM1,GRM7,ITPR1,LMCD1,LRRN1,SETMAR,SUMF1"
TCGA.AA.3529	3	3463375	3735453	197	-0.5106	NEUTRAL	NA	0	None
TCGA.F5.6863	3	3621921	117640198	34884	0.0098	NEUTRAL	NA	583	Too-Many
TCGA.AA.3529	3	3741635	60332000	18933	-0.0059	NEUTRAL	NA	434	Too-Many
TCGA.AZ.6601	3	3803778	60322860	18900	0.0026	NEUTRAL	NA	434	Too-Many
TCGA.AA.3941	3	3806697	4342352	259	-0.5085	NEUTRAL	NA	1	LRRN1
TCGA.AA.A00Z.01A	3	3886284	48580957	66	-0.2768	NEUTRAL	NA	276	Too-Many
TCGA.AG.3605.01A	3	3887066	48621680	73	-0.1307	NEUTRAL	NA	278	Too-Many
TCGA.AG.A026	3	3904389	4013889	59	-0.5096	NEUTRAL	NA	0	None
TCGA.AG.3898	3	3973673	27114272	8943	-0.0133	NEUTRAL	NA	111	Too-Many
TCGA.AG.A026	3	4014201	59750790	18284	0.0148	NEUTRAL	NA	433	Too-Many
TCGA.AA.3867	3	4103925	8694056	2351	0.1031	NEUTRAL	NA	9	"ARL8B,BHLHE40,EDEM1,GRM7,ITPR1,LMCD1,SETMAR,SSUH2,SUMF1"
TCGA.AA.3833	3	4106494	197833757	57358	0.0062	NEUTRAL	NA	1033	Too-Many
TCGA.AA.3561	3	4210503	197833757	57294	0	NEUTRAL	NA	1033	Too-Many
TCGA.AA.3811	3	4210966	4601518	194	-0.1252	NEUTRAL	NA	3	"ITPR1,SETMAR,SUMF1"
TCGA.DM.A28F	3	4259660	60303503	18610	-0.0345	NEUTRAL	NA	433	Too-Many
TCGA.EI.6508	3	4312734	4386593	35	0.141	NEUTRAL	NA	1	SETMAR
TCGA.DM.A28H	3	4312823	46662735	15053	0.0009	NEUTRAL	NA	242	Too-Many
TCGA.AA.3850	3	4329654	5469656	564	0.19355	NEUTRAL	NA	6	"ARL8B,BHLHE40,EDEM1,ITPR1,SETMAR,SUMF1"
TCGA.AG.3909.01A	3	4345458	4558155	14	0.1285	NEUTRAL	NA	3	"ITPR1,SETMAR,SUMF1"
TCGA.AA.3941	3	4345765	4404086	30	0.3492	NEUTRAL	NA	2	"SETMAR,SUMF1"
TCGA.AA.3844	3	4346346	5316621	473	0.0773	NEUTRAL	NA	6	"ARL8B,BHLHE40,EDEM1,ITPR1,SETMAR,SUMF1"
TCGA.AZ.4682	3	4394766	60874076	18951	0.0007	NEUTRAL	NA	432	Too-Many
TCGA.AG.4009.01A	3	4403776	5024523	68	0.2152	NEUTRAL	NA	3	"BHLHE40,ITPR1,SUMF1"
TCGA.AA.3941	3	4410431	4444199	22	-0.1317	NEUTRAL	NA	1	SUMF1
TCGA.AA.3982	3	4410431	4456184	30	0.0457	NEUTRAL	NA	1	SUMF1
TCGA.AA.3518	3	4410431	4875509	289	0.3459	NEUTRAL	NA	2	"ITPR1,SUMF1"
TCGA.EI.6508	3	4416406	5857925	731	0.0773	NEUTRAL	NA	5	"ARL8B,BHLHE40,EDEM1,ITPR1,SUMF1"
TCGA.EI.6513	3	4433998	28261988	9135	-0.003	NEUTRAL	NA	113	Too-Many
TCGA.AA.3864	3	4451309	4601518	84	0.1332	NEUTRAL	NA	2	"ITPR1,SUMF1"
TCGA.A6.6137	3	4461568	7640439	1625	-0.3023	NEUTRAL	NA	6	"ARL8B,BHLHE40,EDEM1,GRM7,ITPR1,SUMF1"
TCGA.AG.3732	3	4462543	4602497	76	-0.0124	NEUTRAL	NA	2	"ITPR1,SUMF1"
TCGA.AA.A00D.01A	3	4508613	5244614	30	-0.0799	NEUTRAL	NA	5	"ARL8B,BHLHE40,EDEM1,ITPR1,SUMF1"
TCGA.AH.6897	3	4518661	5786202	624	0.0406	NEUTRAL	NA	4	"ARL8B,BHLHE40,EDEM1,ITPR1"
TCGA.AA.3811	3	4605371	5404903	385	-0.0569	NEUTRAL	NA	4	"ARL8B,BHLHE40,EDEM1,ITPR1"
TCGA.AA.3864	3	4605371	6193811	789	0.0195	NEUTRAL	NA	4	"ARL8B,BHLHE40,EDEM1,ITPR1"
TCGA.AG.3732	3	4651205	38720715	12426	0.0196	NEUTRAL	NA	160	Too-Many
TCGA.AG.A01W.01A	3	4686292	4701704	11	-0.4946	NEUTRAL	NA	1	ITPR1
TCGA.AA.A00L.01A	3	4687014	4856698	20	0.1063	NEUTRAL	NA	1	ITPR1
TCGA.AG.A01W.01A	3	4705143	9954655	292	-0.0971	NEUTRAL	NA	27	"ARL8B,ARPC4,ARPC4-TTLL3,BHLHE40,BRPF1,CAMK1,CAV3,CIDEC,CPNE9,EDEM1,GRM7,IL17RE,ITPR1,JAGN1,LHFPL4,LMCD1,MTMR14,OGG1,OXTR,RAD18,RPUSD3,SETD5,SRGAP3,SSUH2,TADA3,THUMPD3,TTLL3"
TCGA.AA.3930.01A	3	4712412	4744466	16	-0.102	NEUTRAL	NA	1	ITPR1
TCGA.AG.A016.01A	3	4725899	9976091	266	-0.0782	NEUTRAL	NA	29	"ARL8B,ARPC4,ARPC4-TTLL3,BHLHE40,BRPF1,CAMK1,CAV3,CIDEC,CPNE9,CRELD1,EDEM1,GRM7,IL17RC,IL17RE,ITPR1,JAGN1,LHFPL4,LMCD1,MTMR14,OGG1,OXTR,RAD18,RPUSD3,SETD5,SRGAP3,SSUH2,TADA3,THUMPD3,TTLL3"
TCGA.AA.3930.01A	3	4747803	48219327	2635	-0.4609	NEUTRAL	NA	261	Too-Many
TCGA.AA.3518	3	4905134	35694456	11293	0.0178	NEUTRAL	NA	137	Too-Many
TCGA.CK.5914.01A	3	5021344	5254954	22	-0.3327	NEUTRAL	NA	3	"ARL8B,BHLHE40,EDEM1"
TCGA.AG.3909.01A	3	5021344	6903075	24	-0.3265	NEUTRAL	NA	4	"ARL8B,BHLHE40,EDEM1,GRM7"
TCGA.AA.A00Q.01A	3	5021344	9547603	104	-0.3315	NEUTRAL	NA	13	"ARL8B,BHLHE40,CAV3,EDEM1,GRM7,LHFPL4,LMCD1,OXTR,RAD18,SETD5,SRGAP3,SSUH2,THUMPD3"
TCGA.AA.A00L.01A	3	5021344	16535221	690	-0.3603	NEUTRAL	NA	85	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,COLQ,CPNE9,CRELD1,DPH3,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SEC13,SETD5,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AG.A00C.01A	3	5021939	5248786	15	0.2016	NEUTRAL	NA	3	"ARL8B,BHLHE40,EDEM1"
TCGA.AA.A00F.01A	3	5021939	5257461	22	0.3274	NEUTRAL	NA	3	"ARL8B,BHLHE40,EDEM1"
TCGA.AA.3693	3	5122628	20305292	5751	0.3122	NEUTRAL	NA	95	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,COLQ,CPNE9,CRELD1,DAZL,DPH3,EAF1,EDEM1,EFHB,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,KAT2B,KCNH8,LHFPL4,LMCD1,LOC339862,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PLCL2,PP2D1,PPARG,PRRT3,RAB5A,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SATB1,SEC13,SETD5,SGOL1,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.DM.A1HB	3	5140363	60491102	17943	0.0055	NEUTRAL	NA	429	Too-Many
TCGA.AA.3941	3	5183899	5189700	4	-0.2719	NEUTRAL	NA	1	ARL8B
TCGA.D5.6534	3	5189233	5388342	85	-0.4274	NEUTRAL	NA	2	"ARL8B,EDEM1"
TCGA.AG.4009.01A	3	5212132	6903075	18	-0.5103	NEUTRAL	NA	3	"ARL8B,EDEM1,GRM7"
TCGA.AA.A010.01A	3	5212132	7494262	24	-0.5139	NEUTRAL	NA	3	"ARL8B,EDEM1,GRM7"
TCGA.AF.3914.01A	3	5246705	9731599	121	0.03	NEUTRAL	NA	12	"CAV3,EDEM1,GRM7,LHFPL4,LMCD1,MTMR14,OXTR,RAD18,SETD5,SRGAP3,SSUH2,THUMPD3"
TCGA.AG.A00C.01A	3	5249730	7727983	15	-0.1972	NEUTRAL	NA	2	"EDEM1,GRM7"
TCGA.AA.3941	3	5256781	5316621	29	0.3484	NEUTRAL	NA	1	EDEM1
TCGA.AA.3982	3	5316621	6183468	457	-0.1234	NEUTRAL	NA	0	None
TCGA.AA.3941	3	5319517	5419893	54	-0.073	NEUTRAL	NA	0	None
TCGA.AA.3844	3	5319517	6183468	456	-0.3873	NEUTRAL	NA	0	None
TCGA.DM.A1D6	3	5360800	5365681	10	-0.3637	NEUTRAL	NA	0	None
TCGA.DM.A1D6	3	5368800	186862973	53276	0.0266	NEUTRAL	NA	960	Too-Many
TCGA.D5.6534	3	5388362	100379855	29027	-0.1064	NEUTRAL	NA	511	Too-Many
TCGA.AA.3811	3	5405139	6183468	403	-0.5094	NEUTRAL	NA	0	None
TCGA.AA.3519	3	5419893	119865159	34694	-0.3373	NEUTRAL	NA	592	Too-Many
TCGA.AA.3850	3	5469982	6178556	370	-0.45235	NEUTRAL	NA	0	None
TCGA.AA.3941	3	5469982	6178556	371	-0.3579	NEUTRAL	NA	0	None
TCGA.AH.6897	3	5786778	6709671	479	-0.4253	NEUTRAL	NA	0	None
TCGA.AA.3956	3	5953418	197833757	56347	-0.0167	NEUTRAL	NA	1027	Too-Many
TCGA.AY.A71X	3	5960154	126724368	36446	0.0011	NEUTRAL	NA	653	Too-Many
TCGA.DY.A1DC	3	6150591	85820861	26274	0.018	NEUTRAL	NA	469	Too-Many
TCGA.EI.6508	3	6160387	10182561	1888	0.0578	NEUTRAL	NA	31	"ARPC4,ARPC4-TTLL3,BRK1,BRPF1,CAMK1,CAV3,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,GRM7,IL17RC,IL17RE,JAGN1,LHFPL4,LMCD1,LOC401052,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SETD5,SRGAP3,SSUH2,TADA3,THUMPD3,TTLL3"
TCGA.AA.3850	3	6194026	7085712	439	-0.41775	NEUTRAL	NA	1	GRM7
TCGA.AA.3941	3	6206900	7085712	429	-0.2656	NEUTRAL	NA	1	GRM7
TCGA.AA.3982	3	6206900	7086756	430	-0.1146	NEUTRAL	NA	1	GRM7
TCGA.AA.3844	3	6206900	8568955	1227	-0.3947	NEUTRAL	NA	2	"GRM7,LMCD1"
TCGA.AA.3864	3	6207872	7450182	622	-0.1341	NEUTRAL	NA	1	GRM7
TCGA.AA.3872	3	6207872	8466050	1166	-0.141	NEUTRAL	NA	1	GRM7
TCGA.A6.5660	3	6242366	197833757	56044	-0.0305	NEUTRAL	NA	1027	Too-Many
TCGA.AH.6897	3	6713460	60050092	17206	-0.0014	NEUTRAL	NA	427	Too-Many
TCGA.AA.A00F.01A	3	6903075	9166372	64	0.0238	NEUTRAL	NA	7	"CAV3,GRM7,LMCD1,OXTR,RAD18,SRGAP3,SSUH2"
TCGA.AA.3496	3	7046444	197833757	55693	-0.022	NEUTRAL	NA	1027	Too-Many
TCGA.AA.3982	3	7091337	7484855	219	-0.478	NEUTRAL	NA	1	GRM7
TCGA.AZ.6608	3	7092020	21768245	5315	0.3629	NEUTRAL	NA	94	"ANKRD28,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,COLQ,CPNE9,CRELD1,DAZL,DPH3,EAF1,EFHB,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,KAT2B,KCNH8,LHFPL4,LMCD1,LOC339862,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PLCL2,PP2D1,PPARG,PRRT3,RAB5A,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SATB1,SEC13,SETD5,SGOL1,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC,ZNF385D"
TCGA.AA.3941	3	7151263	8446264	691	-0.3514	NEUTRAL	NA	1	GRM7
TCGA.AA.3850	3	7151263	8451804	692	-0.43635	NEUTRAL	NA	1	GRM7
TCGA.CM.5341	3	7164222	11096974	1867	-0.0402	NEUTRAL	NA	39	"ARPC4,ARPC4-TTLL3,ATP2B2,BRK1,BRPF1,CAMK1,CAV3,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,IL17RC,IL17RE,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SLC6A1,SLC6A11,SRGAP3,SSUH2,TADA3,TATDN2,THUMPD3,TTLL3,VHL"
TCGA.AG.4009.01A	3	7188088	7727983	9	-0.0478	NEUTRAL	NA	1	GRM7
TCGA.CM.4752	3	7269034	59773059	16685	0.0113	NEUTRAL	NA	427	Too-Many
TCGA.AA.3864	3	7458709	37977416	10815	-0.0088	NEUTRAL	NA	144	Too-Many
TCGA.EI.7002	3	7476596	79826030	24394	0	NEUTRAL	NA	467	Too-Many
TCGA.AA.3982	3	7485713	7854711	219	-0.1087	NEUTRAL	NA	1	GRM7
TCGA.AA.A010.01A	3	7503233	8578821	8	0.155	NEUTRAL	NA	2	"GRM7,LMCD1"
TCGA.A6.6137	3	7643579	197833757	55550	0.0689	NEUTRAL	NA	1027	Too-Many
TCGA.AG.4009.01A	3	7781967	9146316	53	0.2415	NEUTRAL	NA	7	"CAV3,GRM7,LMCD1,OXTR,RAD18,SRGAP3,SSUH2"
TCGA.AA.3982	3	7865251	7888644	10	0.2138	NEUTRAL	NA	0	None
TCGA.AA.3982	3	7891226	8570873	336	0.0276	NEUTRAL	NA	1	LMCD1
TCGA.AA.3850	3	8455926	8571109	74	0.13535	NEUTRAL	NA	1	LMCD1
TCGA.AA.3872	3	8467510	10295604	733	0.1795	NEUTRAL	NA	33	"ARPC4,ARPC4-TTLL3,BRK1,BRPF1,CAMK1,CAV3,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IL17RE,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SETD5,SRGAP3,SSUH2,TADA3,TATDN2,THUMPD3,TTLL3,VHL"
TCGA.AA.3811	3	8475746	16584553	3139	0.0082	NEUTRAL	NA	81	"ANKRD28,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,COLQ,CPNE9,CRELD1,DPH3,EAF1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SEC13,SETD5,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.3844	3	8569208	14260673	2205	0.1178	NEUTRAL	NA	61	"ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,CAMK1,CAND2,CAV3,CHCHD4,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,FBLN2,GHRL,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,LSM3,MKRN2,MKRN2OS,MTMR14,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RPL32,RPUSD3,SEC13,SETD5,SLC6A1,SLC6A11,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.3530	3	8571109	16626187	3092	0.2004	NEUTRAL	NA	81	"ANKRD28,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,COLQ,CPNE9,CRELD1,DPH3,EAF1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SEC13,SETD5,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.3850	3	8573094	9522479	504	0.27365	NEUTRAL	NA	8	"CAV3,LMCD1,OXTR,RAD18,SETD5,SRGAP3,SSUH2,THUMPD3"
TCGA.A6.5661	3	8592116	15185741	2570	-0.4017	NEUTRAL	NA	69	"ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,C3orf20,CAMK1,CAND2,CAV3,CCDC174,CHCHD4,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GHRL,GRIP2,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,LSM3,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RPL32,RPUSD3,SEC13,SETD5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AZ.4308	3	8647293	60681991	16643	0.0078	NEUTRAL	NA	425	Too-Many
TCGA.AG.3611.01A	3	8665187	8675304	8	0.2084	NEUTRAL	NA	1	SSUH2
TCGA.AA.3867	3	8701688	33541357	8819	0.1441	NEUTRAL	NA	129	Too-Many
TCGA.A6.2675	3	8771502	197833757	54522	-0.0035	NEUTRAL	NA	1024	Too-Many
TCGA.AG.3611.01A	3	8775411	8808905	4	-0.2339	NEUTRAL	NA	2	"CAV3,OXTR"
TCGA.AA.A010.01A	3	8775411	9290535	40	0.3536	NEUTRAL	NA	4	"CAV3,OXTR,RAD18,SRGAP3"
TCGA.AG.A00C.01A	3	8775411	9731599	89	-0.0904	NEUTRAL	NA	8	"CAV3,LHFPL4,MTMR14,OXTR,RAD18,SETD5,SRGAP3,THUMPD3"
TCGA.A6.6653	3	8782886	59763871	15889	-0.0066	NEUTRAL	NA	424	Too-Many
TCGA.G4.6303	3	8917702	81108934	23936	0.1247	NEUTRAL	NA	462	Too-Many
TCGA.AG.3611.01A	3	8923004	18393437	651	0.0914	NEUTRAL	NA	82	"ANKRD28,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CCDC174,CHCHD4,CIDEC,COLQ,CPNE9,CRELD1,DAZL,DPH3,EAF1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LHFPL4,LOC339862,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,PLCL2,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SATB1,SEC13,SETD5,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AG.3891.01A	3	9057230	11606224	341	0.1488	NEUTRAL	NA	36	"ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,CAMK1,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,GHRL,HRH1,IL17RC,IL17RE,IRAK2,JAGN1,LHFPL4,LOC401052,MTMR14,OGG1,PRRT3,RPUSD3,SEC13,SETD5,SLC6A1,SLC6A11,SRGAP3,TADA3,TATDN2,THUMPD3,TTLL3,VGLL4,VHL"
TCGA.AA.A017.01A	3	9079663	12791196	395	-0.2133	NEUTRAL	NA	45	"ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,CAMK1,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,GHRL,HRH1,IL17RC,IL17RE,IRAK2,JAGN1,LHFPL4,LOC401052,MKRN2,MKRN2OS,MTMR14,OGG1,PPARG,PRRT3,RAF1,RPUSD3,SEC13,SETD5,SLC6A1,SLC6A11,SRGAP3,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TSEN2,TTLL3,VGLL4,VHL"
TCGA.AG.4009.01A	3	9166372	9489329	24	-0.1504	NEUTRAL	NA	3	"SETD5,SRGAP3,THUMPD3"
TCGA.AA.A00D.01A	3	9406712	10206594	157	-0.2335	NEUTRAL	NA	26	"ARPC4,ARPC4-TTLL3,BRK1,BRPF1,CAMK1,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IL17RE,IRAK2,JAGN1,LHFPL4,LOC401052,MTMR14,OGG1,PRRT3,RPUSD3,SETD5,TADA3,THUMPD3,TTLL3,VHL"
TCGA.CK.5914.01A	3	9470561	9745628	47	0.1687	NEUTRAL	NA	4	"CPNE9,LHFPL4,MTMR14,SETD5"
TCGA.AA.A010.01A	3	9482088	9718940	28	0.3017	NEUTRAL	NA	3	"LHFPL4,MTMR14,SETD5"
TCGA.AG.4009.01A	3	9490084	9547603	10	0.261	NEUTRAL	NA	2	"LHFPL4,SETD5"
TCGA.AA.A029.01A	3	9506061	15253573	544	-0.4658	NEUTRAL	NA	63	"ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,C3orf20,CAMK1,CAND2,CAPN7,CCDC174,CHCHD4,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GHRL,GRIP2,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LHFPL4,LOC401052,LSM3,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,PPARG,PRRT3,RAF1,RBSN,RPL32,RPUSD3,SEC13,SETD5,SLC6A1,SLC6A11,SLC6A6,SYN2,TADA3,TAMM41,TATDN2,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.A02F.01A	3	9512105	10311764	197	-0.4146	NEUTRAL	NA	26	"ARPC4,ARPC4-TTLL3,BRK1,BRPF1,CAMK1,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IL17RE,IRAK2,JAGN1,LHFPL4,LOC401052,MTMR14,OGG1,PRRT3,RPUSD3,SETD5,TADA3,TATDN2,TTLL3,VHL"
TCGA.AA.A00N.01A	3	9593911	9731599	18	-0.1289	NEUTRAL	NA	2	"LHFPL4,MTMR14"
TCGA.AG.4009.01A	3	9593911	9731599	16	-0.0851	NEUTRAL	NA	2	"LHFPL4,MTMR14"
TCGA.AG.4009.01A	3	9739368	9767584	14	-0.4523	NEUTRAL	NA	2	"CPNE9,MTMR14"
TCGA.AG.A00C.01A	3	9739368	9854590	56	0.3736	NEUTRAL	NA	9	"ARPC4,ARPC4-TTLL3,BRPF1,CAMK1,CPNE9,MTMR14,OGG1,TADA3,TTLL3"
TCGA.AG.A014.01A	3	9747638	10219514	164	0.2503	NEUTRAL	NA	22	"ARPC4,ARPC4-TTLL3,BRK1,BRPF1,CAMK1,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IL17RE,IRAK2,JAGN1,LOC401052,OGG1,PRRT3,RPUSD3,TADA3,TTLL3,VHL"
TCGA.AF.3914.01A	3	9754170	9932350	73	0.0176	NEUTRAL	NA	11	"ARPC4,ARPC4-TTLL3,BRPF1,CAMK1,CIDEC,CPNE9,JAGN1,OGG1,RPUSD3,TADA3,TTLL3"
TCGA.AG.4009.01A	3	9768288	9788803	15	0.2562	NEUTRAL	NA	2	"BRPF1,CPNE9"
TCGA.AA.A01Q.01A	3	9775814	9986007	86	-0.3243	NEUTRAL	NA	13	"ARPC4,ARPC4-TTLL3,BRPF1,CAMK1,CIDEC,CRELD1,IL17RC,IL17RE,JAGN1,OGG1,RPUSD3,TADA3,TTLL3"
TCGA.AA.3967.01A	3	9775814	10327467	173	0.0383	NEUTRAL	NA	23	"ARPC4,ARPC4-TTLL3,BRK1,BRPF1,CAMK1,CIDEC,CRELD1,EMC3,FANCD2,FANCD2OS,GHRL,IL17RC,IL17RE,IRAK2,JAGN1,LOC401052,OGG1,PRRT3,RPUSD3,TADA3,TATDN2,TTLL3,VHL"
TCGA.AA.A00Q.01A	3	9775814	14813537	434	-0.3642	NEUTRAL	NA	54	"ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,C3orf20,CAMK1,CAND2,CCDC174,CHCHD4,CIDEC,CRELD1,EMC3,FANCD2,FANCD2OS,FBLN2,GHRL,GRIP2,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LOC401052,LSM3,MKRN2,MKRN2OS,NUP210,OGG1,PPARG,PRRT3,RAF1,RPL32,RPUSD3,SEC13,SLC6A1,SLC6A11,SLC6A6,SYN2,TADA3,TAMM41,TATDN2,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.A00N.01A	3	9785244	9799168	13	0.0963	NEUTRAL	NA	3	"BRPF1,CAMK1,OGG1"
TCGA.AG.3909.01A	3	9785244	9799168	13	-0.0227	NEUTRAL	NA	3	"BRPF1,CAMK1,OGG1"
TCGA.AG.4009.01A	3	9791929	9847800	25	-0.029	NEUTRAL	NA	5	"ARPC4,ARPC4-TTLL3,CAMK1,OGG1,TADA3"
TCGA.AG.3909.01A	3	9852293	9918702	21	0.0442	NEUTRAL	NA	4	"ARPC4-TTLL3,CIDEC,RPUSD3,TTLL3"
TCGA.AG.4009.01A	3	9854590	9945684	24	0.2615	NEUTRAL	NA	6	"ARPC4-TTLL3,CIDEC,IL17RE,JAGN1,RPUSD3,TTLL3"
TCGA.CK.5914.01A	3	9857706	9880669	12	0.3434	NEUTRAL	NA	3	"ARPC4-TTLL3,RPUSD3,TTLL3"
TCGA.AG.A00C.01A	3	9857706	9908771	17	-0.0143	NEUTRAL	NA	4	"ARPC4-TTLL3,CIDEC,RPUSD3,TTLL3"
TCGA.AA.A00N.01A	3	9862191	9944565	21	0.0645	NEUTRAL	NA	6	"ARPC4-TTLL3,CIDEC,IL17RE,JAGN1,RPUSD3,TTLL3"
TCGA.CK.5914.01A	3	9881819	10191464	107	-0.4985	NEUTRAL	NA	13	"BRK1,CIDEC,CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IL17RE,JAGN1,LOC401052,PRRT3,RPUSD3,VHL"
TCGA.AF.3914.01A	3	9934592	10133809	83	-0.3281	NEUTRAL	NA	9	"CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IL17RE,JAGN1,LOC401052,PRRT3"
TCGA.AG.4009.01A	3	9948000	9990813	33	-0.2373	NEUTRAL	NA	4	"CRELD1,IL17RC,IL17RE,PRRT3"
TCGA.AA.A01F.01A	3	9979643	9990813	7	0.2059	NEUTRAL	NA	2	"CRELD1,PRRT3"
TCGA.AG.A01W.01A	3	9980704	14520031	391	-0.1322	NEUTRAL	NA	39	"ATG7,ATP2B2,BRK1,CAND2,CHCHD4,CRELD1,EMC3,FANCD2,FANCD2OS,FBLN2,GHRL,HDAC11,HRH1,IQSEC1,IRAK2,LOC401052,LSM3,MKRN2,MKRN2OS,NUP210,PPARG,PRRT3,RAF1,RPL32,SEC13,SLC6A1,SLC6A11,SLC6A6,SYN2,TAMM41,TATDN2,TIMP4,TMEM40,TMEM43,TSEN2,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.A01Q.01A	3	9987873	10107061	32	0.0828	NEUTRAL	NA	4	"EMC3,FANCD2,LOC401052,PRRT3"
TCGA.AG.4009.01A	3	10005703	10074484	12	0.3113	NEUTRAL	NA	3	"EMC3,FANCD2,LOC401052"
TCGA.AG.A015.01A	3	10005703	10137993	50	-0.2235	NEUTRAL	NA	4	"EMC3,FANCD2,FANCD2OS,LOC401052"
TCGA.AA.A01F.01A	3	10005703	14769897	342	-0.3311	NEUTRAL	NA	40	"ATG7,ATP2B2,BRK1,C3orf20,CAND2,CCDC174,CHCHD4,EMC3,FANCD2,FANCD2OS,FBLN2,GHRL,GRIP2,HDAC11,HRH1,IQSEC1,IRAK2,LOC401052,LSM3,MKRN2,MKRN2OS,NUP210,PPARG,RAF1,RPL32,SEC13,SLC6A1,SLC6A11,SLC6A6,SYN2,TAMM41,TATDN2,TIMP4,TMEM40,TMEM43,TSEN2,VGLL4,VHL,WNT7A,XPC"
TCGA.AG.A01L.01A	3	10005703	16475336	572	0.1546	NEUTRAL	NA	56	"ANKRD28,ATG7,ATP2B2,BRK1,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,DPH3,EAF1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IQSEC1,IRAK2,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,OXNAD1,PPARG,RAF1,RBSN,RFTN1,RPL32,SEC13,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SYN2,TAMM41,TATDN2,TIMP4,TMEM40,TMEM43,TSEN2,VGLL4,VHL,WNT7A,XPC"
TCGA.AG.A016.01A	3	10005703	40573564	1551	-0.0691	NEUTRAL	NA	149	Too-Many
TCGA.AG.3909.01A	3	10011345	10028172	7	0.2807	NEUTRAL	NA	1	EMC3
TCGA.AG.A00C.01A	3	10011345	10028172	7	0.0141	NEUTRAL	NA	1	EMC3
TCGA.AA.A010.01A	3	10015261	10019005	4	-0.0816	NEUTRAL	NA	1	EMC3
TCGA.AG.3909.01A	3	10049039	10077901	8	-0.2294	NEUTRAL	NA	2	"FANCD2,LOC401052"
TCGA.AG.4009.01A	3	10076088	10094024	15	-0.0558	NEUTRAL	NA	1	FANCD2
TCGA.AA.A010.01A	3	10076367	10122744	27	-0.2065	NEUTRAL	NA	1	FANCD2
TCGA.AG.A00C.01A	3	10076841	10091006	12	0.023	NEUTRAL	NA	1	FANCD2
TCGA.AG.3909.01A	3	10080926	10094024	11	0.1249	NEUTRAL	NA	1	FANCD2
TCGA.AA.A01Q.01A	3	10119714	10356953	47	0.078	NEUTRAL	NA	8	"BRK1,FANCD2,FANCD2OS,GHRL,IRAK2,SEC13,TATDN2,VHL"
TCGA.AG.4009.01A	3	10127447	10134892	7	-0.3178	NEUTRAL	NA	2	"FANCD2,FANCD2OS"
TCGA.AA.A010.01A	3	10127447	10142859	12	-0.4885	NEUTRAL	NA	2	"FANCD2,FANCD2OS"
TCGA.AF.3914.01A	3	10134892	39130679	1446	0.0152	NEUTRAL	NA	131	Too-Many
TCGA.AG.4009.01A	3	10135922	10280432	20	0.1141	NEUTRAL	NA	5	"BRK1,FANCD2,FANCD2OS,IRAK2,VHL"
TCGA.CK.5914.01A	3	10206594	10356953	31	0.2373	NEUTRAL	NA	4	"GHRL,IRAK2,SEC13,TATDN2"
TCGA.AA.A00N.01A	3	10206594	12046009	122	0.1897	NEUTRAL	NA	12	"ATG7,ATP2B2,GHRL,HRH1,IRAK2,SEC13,SLC6A1,SLC6A11,SYN2,TAMM41,TATDN2,VGLL4"
TCGA.AA.A00F.01A	3	10206594	23631187	530	0.1189	NEUTRAL	NA	63	"ANKRD28,ATG7,ATP2B2,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,DAZL,DPH3,EAF1,EFHB,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IQSEC1,IRAK2,KAT2B,KCNH8,LOC339862,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,OXNAD1,PLCL2,PP2D1,PPARG,RAB5A,RAF1,RBSN,RFTN1,RPL32,SATB1,SEC13,SGOL1,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SYN2,TAMM41,TATDN2,TBC1D5,TIMP4,TMEM40,TMEM43,TSEN2,UBE2E2,VGLL4,WNT7A,XPC,ZNF385D"
TCGA.AG.A014.01A	3	10242006	183823003	8319	-0.134	NEUTRAL	NA	888	Too-Many
TCGA.EI.6508	3	10242670	16960180	2572	0.0195	NEUTRAL	NA	52	"ANKRD28,ATG7,ATP2B2,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,DAZL,DPH3,EAF1,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IQSEC1,IRAK2,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,OXNAD1,PLCL2,PPARG,RAF1,RBSN,RFTN1,RPL32,SEC13,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SYN2,TAMM41,TATDN2,TIMP4,TMEM40,TMEM43,TSEN2,VGLL4,WNT7A,XPC"
TCGA.AG.A00C.01A	3	10251222	13895987	256	-0.0689	NEUTRAL	NA	26	"ATG7,ATP2B2,CAND2,FBLN2,GHRL,HDAC11,HRH1,IQSEC1,IRAK2,MKRN2,MKRN2OS,NUP210,PPARG,RAF1,RPL32,SEC13,SLC6A1,SLC6A11,SYN2,TAMM41,TATDN2,TIMP4,TMEM40,TSEN2,VGLL4,WNT7A"
TCGA.AG.4009.01A	3	10283752	10311764	4	-0.3522	NEUTRAL	NA	2	"IRAK2,TATDN2"
TCGA.AG.A015.01A	3	10283752	38052698	1169	-0.1608	NEUTRAL	NA	114	Too-Many
TCGA.AA.3850	3	10301299	12013352	751	0.30525	NEUTRAL	NA	10	"ATG7,ATP2B2,GHRL,HRH1,SEC13,SLC6A1,SLC6A11,TAMM41,TATDN2,VGLL4"
TCGA.AA.3872	3	10302959	39011225	9876	-0.0094	NEUTRAL	NA	125	Too-Many
TCGA.AG.4009.01A	3	10317998	13895987	244	0.2111	NEUTRAL	NA	25	"ATG7,ATP2B2,CAND2,FBLN2,GHRL,HDAC11,HRH1,IQSEC1,MKRN2,MKRN2OS,NUP210,PPARG,RAF1,RPL32,SEC13,SLC6A1,SLC6A11,SYN2,TAMM41,TATDN2,TIMP4,TMEM40,TSEN2,VGLL4,WNT7A"
TCGA.AA.A02F.01A	3	10317998	183908723	7829	0.1202	NEUTRAL	NA	891	Too-Many
TCGA.AA.3967.01A	3	10328338	31774698	852	-0.309	NEUTRAL	NA	82	"ANKRD28,ATG7,ATP2B2,AZI2,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,CMC1,COLQ,DAZL,DPH3,EAF1,EFHB,EOMES,FBLN2,FGD5,GADL1,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IQSEC1,KAT2B,KCNH8,LOC339862,LRRC3B,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NEK10,NGLY1,NKIRAS1,NR1D2,NR2C2,NUP210,OSBPL10,OXNAD1,OXSM,PLCL2,PP2D1,PPARG,RAB5A,RAF1,RARB,RBMS3,RBSN,RFTN1,RPL15,RPL32,SATB1,SEC13,SGOL1,SH3BP5,SLC4A7,SLC6A1,SLC6A11,SLC6A6,STT3B,SYN2,TAMM41,TBC1D5,TGFBR2,THRB,TIMP4,TMEM40,TMEM43,TOP2B,TSEN2,UBE2E1,UBE2E2,VGLL4,WNT7A,XPC,ZCWPW2,ZNF385D"
TCGA.AM.5820	3	10355583	11139578	408	0.3185	NEUTRAL	NA	4	"ATP2B2,SEC13,SLC6A1,SLC6A11"
TCGA.AA.A01Q.01A	3	10359659	11061880	44	-0.513	NEUTRAL	NA	4	"ATP2B2,SEC13,SLC6A1,SLC6A11"
TCGA.CK.5914.01A	3	10387021	12942480	167	0.0762	NEUTRAL	NA	18	"ATG7,ATP2B2,CAND2,HRH1,IQSEC1,MKRN2,MKRN2OS,PPARG,RAF1,RPL32,SLC6A1,SLC6A11,SYN2,TAMM41,TIMP4,TMEM40,TSEN2,VGLL4"
TCGA.AF.A56K	3	10400958	60280254	15664	-0.0226	NEUTRAL	NA	391	Too-Many
TCGA.AG.3909.01A	3	10491002	12659962	119	0.2005	NEUTRAL	NA	14	"ATG7,ATP2B2,HRH1,MKRN2,MKRN2OS,PPARG,RAF1,SLC6A1,SLC6A11,SYN2,TAMM41,TIMP4,TSEN2,VGLL4"
TCGA.G4.6295	3	11041807	129760621	34751	0.0085	NEUTRAL	NA	648	Too-Many
TCGA.AA.A01Q.01A	3	11063981	12866942	106	0.0857	NEUTRAL	NA	14	"ATG7,CAND2,HRH1,MKRN2,MKRN2OS,PPARG,RAF1,SLC6A1,SYN2,TAMM41,TIMP4,TMEM40,TSEN2,VGLL4"
TCGA.AM.5820	3	11144849	12826798	561	-0.0178	NEUTRAL	NA	12	"ATG7,HRH1,MKRN2,MKRN2OS,PPARG,RAF1,SYN2,TAMM41,TIMP4,TMEM40,TSEN2,VGLL4"
TCGA.F4.6570	3	11518754	60441340	15322	-0.0091	NEUTRAL	NA	387	Too-Many
TCGA.AA.3848	3	11679508	57024214	13900	-0.0533	NEUTRAL	NA	364	Too-Many
TCGA.AG.3891.01A	3	11744380	32754667	799	-0.0976	NEUTRAL	NA	82	"ANKRD28,AZI2,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,COLQ,DAZL,DPH3,DYNC1LI1,EAF1,EFHB,EOMES,FBLN2,FGD5,GADL1,GALNT15,GPD1L,GRIP2,HACL1,HDAC11,IQSEC1,KAT2B,KCNH8,LOC339862,LRRC3B,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NEK10,NGLY1,NKIRAS1,NR1D2,NR2C2,NUP210,OSBPL10,OXNAD1,OXSM,PLCL2,PP2D1,PPARG,RAB5A,RAF1,RARB,RBMS3,RBSN,RFTN1,RPL15,RPL32,SATB1,SGOL1,SH3BP5,SLC4A7,SLC6A6,STT3B,SYN2,TAMM41,TBC1D5,TGFBR2,THRB,TIMP4,TMEM40,TMEM43,TOP2B,TSEN2,UBE2E1,UBE2E2,VGLL4,WNT7A,XPC,ZCWPW2,ZNF385D,ZNF860"
TCGA.AU.3779	3	11937401	15547309	1333	-0.0129	NEUTRAL	NA	32	"C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,EAF1,FBLN2,FGD5,GRIP2,HDAC11,IQSEC1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,PPARG,RAF1,RBSN,RPL32,SH3BP5,SLC6A6,SYN2,TIMP4,TMEM40,TMEM43,TSEN2,WNT7A,XPC"
TCGA.5M.AATE	3	11956578	197833757	53655	0	NEUTRAL	NA	984	Too-Many
TCGA.CM.5341	3	11961341	20307060	2591	-0.0598	NEUTRAL	NA	50	"ANKRD28,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,DAZL,DPH3,EAF1,EFHB,FBLN2,FGD5,GALNT15,GRIP2,HACL1,HDAC11,IQSEC1,KAT2B,KCNH8,LOC339862,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,OXNAD1,PLCL2,PP2D1,PPARG,RAB5A,RAF1,RBSN,RFTN1,RPL32,SATB1,SGOL1,SH3BP5,SLC6A6,SYN2,TBC1D5,TIMP4,TMEM40,TMEM43,TSEN2,WNT7A,XPC"
TCGA.AA.3850	3	12018674	12184556	49	-0.26885	NEUTRAL	NA	1	SYN2
TCGA.AA.3977	3	12147402	59555512	14341	0.0204	NEUTRAL	NA	383	Too-Many
TCGA.AA.3870	3	12183082	12523603	115	0.0731	NEUTRAL	NA	3	"PPARG,SYN2,TIMP4"
TCGA.AA.3850	3	12188657	15163198	1104	0.35085	NEUTRAL	NA	27	"C3orf20,CAND2,CCDC174,CHCHD4,FBLN2,FGD5,GRIP2,HDAC11,IQSEC1,LSM3,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,PPARG,RAF1,RBSN,RPL32,SLC6A6,SYN2,TIMP4,TMEM40,TMEM43,TSEN2,WNT7A,XPC"
TCGA.CA.5254	3	12301471	57038366	13620	-0.0159	NEUTRAL	NA	360	Too-Many
TCGA.AA.A010.01A	3	12393074	12779562	46	0.2047	NEUTRAL	NA	6	"MKRN2,MKRN2OS,PPARG,RAF1,TMEM40,TSEN2"
TCGA.AA.A00N.01A	3	12544732	12623270	15	0.0315	NEUTRAL	NA	3	"MKRN2,MKRN2OS,TSEN2"
TCGA.EI.6514	3	12635705	24972791	4156	-0.513	NEUTRAL	NA	51	"ANKRD28,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,DAZL,DPH3,EAF1,EFHB,FBLN2,FGD5,GALNT15,GRIP2,HACL1,HDAC11,IQSEC1,KAT2B,KCNH8,LOC339862,LSM3,METTL6,MRPS25,NKIRAS1,NR1D2,NR2C2,NUP210,OXNAD1,PLCL2,PP2D1,RAB5A,RAF1,RBSN,RFTN1,RPL15,RPL32,SATB1,SGOL1,SH3BP5,SLC6A6,TBC1D5,THRB,TMEM40,TMEM43,UBE2E1,UBE2E2,WNT7A,XPC,ZNF385D"
TCGA.AA.A00N.01A	3	12790202	13114416	35	-0.3039	NEUTRAL	NA	4	"CAND2,IQSEC1,RPL32,TMEM40"
TCGA.AM.5820	3	12829314	13109783	95	0.364	NEUTRAL	NA	3	"CAND2,IQSEC1,RPL32"
TCGA.AA.A010.01A	3	12838167	13373741	43	0.1527	NEUTRAL	NA	4	"CAND2,IQSEC1,NUP210,RPL32"
TCGA.A6.3808.01A	3	12838167	14862431	199	-0.3257	NEUTRAL	NA	16	"C3orf20,CAND2,CCDC174,CHCHD4,FBLN2,FGD5,GRIP2,HDAC11,IQSEC1,LSM3,NUP210,RPL32,SLC6A6,TMEM43,WNT7A,XPC"
TCGA.AA.A017.01A	3	12844950	44673926	1482	0.0514	NEUTRAL	NA	154	Too-Many
TCGA.AA.3526	3	12861585	110379834	28394	-0.0169	NEUTRAL	NA	488	Too-Many
TCGA.AA.A01Q.01A	3	12983020	14487184	84	-0.2951	NEUTRAL	NA	10	"CHCHD4,FBLN2,HDAC11,IQSEC1,LSM3,NUP210,SLC6A6,TMEM43,WNT7A,XPC"
TCGA.CM.6676	3	13081884	197833757	53098	-0.0391	NEUTRAL	NA	974	Too-Many
TCGA.AM.5820	3	13116060	14007729	359	0.3735	NEUTRAL	NA	4	"FBLN2,HDAC11,NUP210,WNT7A"
TCGA.NH.A50T	3	13218280	60024228	14302	0.0109	NEUTRAL	NA	373	Too-Many
TCGA.CK.5914.01A	3	13359132	14567327	135	-0.0873	NEUTRAL	NA	10	"CHCHD4,FBLN2,GRIP2,HDAC11,LSM3,NUP210,SLC6A6,TMEM43,WNT7A,XPC"
TCGA.AG.3909.01A	3	13360517	14206901	85	0.2391	NEUTRAL	NA	7	"CHCHD4,FBLN2,HDAC11,NUP210,TMEM43,WNT7A,XPC"
TCGA.AA.A00N.01A	3	13420348	14200087	62	0.0438	NEUTRAL	NA	7	"CHCHD4,FBLN2,HDAC11,NUP210,TMEM43,WNT7A,XPC"
TCGA.AA.A010.01A	3	13420348	14214327	69	0.0568	NEUTRAL	NA	7	"CHCHD4,FBLN2,HDAC11,NUP210,TMEM43,WNT7A,XPC"
TCGA.AA.3560	3	13892542	16939444	1114	0.1382	NEUTRAL	NA	27	"ANKRD28,BTD,C3orf20,CAPN7,CCDC174,CHCHD4,COLQ,DAZL,DPH3,EAF1,FGD5,GALNT15,GRIP2,HACL1,LSM3,METTL6,MRPS25,NR2C2,OXNAD1,PLCL2,RBSN,RFTN1,SH3BP5,SLC6A6,TMEM43,WNT7A,XPC"
TCGA.AG.A00C.01A	3	13916406	14177285	13	0.368	NEUTRAL	NA	3	"CHCHD4,TMEM43,WNT7A"
TCGA.AG.4009.01A	3	13916406	14189366	19	-0.4403	NEUTRAL	NA	4	"CHCHD4,TMEM43,WNT7A,XPC"
TCGA.AM.5820	3	14010973	14152278	25	-0.1653	NEUTRAL	NA	0	None
TCGA.AG.A00C.01A	3	14180630	14199539	9	-0.1182	NEUTRAL	NA	2	"TMEM43,XPC"
TCGA.AM.5820	3	14188289	14624522	216	0.3588	NEUTRAL	NA	4	"GRIP2,LSM3,SLC6A6,XPC"
TCGA.AG.4009.01A	3	14190015	14513666	24	0.1949	NEUTRAL	NA	3	"LSM3,SLC6A6,XPC"
TCGA.AG.A00C.01A	3	14200087	14239479	13	0.365	NEUTRAL	NA	2	"LSM3,XPC"
TCGA.AA.3844	3	14265046	16584002	870	0.0816	NEUTRAL	NA	20	"ANKRD28,BTD,C3orf20,CAPN7,CCDC174,COLQ,DPH3,EAF1,FGD5,GALNT15,GRIP2,HACL1,METTL6,MRPS25,NR2C2,OXNAD1,RBSN,RFTN1,SH3BP5,SLC6A6"
TCGA.AG.3909.01A	3	14485095	14566936	31	0.0999	NEUTRAL	NA	2	"GRIP2,SLC6A6"
TCGA.AA.A00N.01A	3	14485095	14709504	44	0.2063	NEUTRAL	NA	3	"CCDC174,GRIP2,SLC6A6"
TCGA.AG.A00C.01A	3	14485095	23631187	345	-0.1466	NEUTRAL	NA	33	"ANKRD28,BTD,C3orf20,CAPN7,CCDC174,COLQ,DAZL,DPH3,EAF1,EFHB,FGD5,GALNT15,GRIP2,HACL1,KAT2B,KCNH8,LOC339862,METTL6,MRPS25,NR2C2,OXNAD1,PLCL2,PP2D1,RAB5A,RBSN,RFTN1,SATB1,SGOL1,SH3BP5,SLC6A6,TBC1D5,UBE2E2,ZNF385D"
TCGA.AA.3679	3	14489693	161133074	42440	-0.0077	NEUTRAL	NA	787	Too-Many
TCGA.AG.A01W.01A	3	14530753	15686765	175	-0.0893	NEUTRAL	NA	15	"BTD,C3orf20,CAPN7,CCDC174,COLQ,EAF1,FGD5,GRIP2,HACL1,METTL6,MRPS25,NR2C2,RBSN,SH3BP5,SLC6A6"
TCGA.AA.A01Q.01A	3	14547076	27465480	352	0.111	NEUTRAL	NA	44	"ANKRD28,BTD,C3orf20,CAPN7,CCDC174,COLQ,DAZL,DPH3,EAF1,EFHB,FGD5,GALNT15,GRIP2,HACL1,KAT2B,KCNH8,LOC339862,LRRC3B,METTL6,MRPS25,NEK10,NGLY1,NKIRAS1,NR1D2,NR2C2,OXNAD1,OXSM,PLCL2,PP2D1,RAB5A,RARB,RBSN,RFTN1,RPL15,SATB1,SGOL1,SH3BP5,SLC4A7,TBC1D5,THRB,TOP2B,UBE2E1,UBE2E2,ZNF385D"
TCGA.AG.4009.01A	3	14565062	15137428	75	0.0574	NEUTRAL	NA	7	"C3orf20,CCDC174,FGD5,GRIP2,MRPS25,NR2C2,RBSN"
TCGA.CK.5914.01A	3	14581725	23631187	324	0.2308	NEUTRAL	NA	32	"ANKRD28,BTD,C3orf20,CAPN7,CCDC174,COLQ,DAZL,DPH3,EAF1,EFHB,FGD5,GALNT15,GRIP2,HACL1,KAT2B,KCNH8,LOC339862,METTL6,MRPS25,NR2C2,OXNAD1,PLCL2,PP2D1,RAB5A,RBSN,RFTN1,SATB1,SGOL1,SH3BP5,TBC1D5,UBE2E2,ZNF385D"
TCGA.AM.5820	3	14625244	37099565	7571	0.0072	NEUTRAL	NA	76	"ANKRD28,ARPP21,AZI2,BTD,C3orf20,CAPN7,CCDC174,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,COLQ,CRTAP,DAZL,DCLK3,DPH3,DYNC1LI1,EAF1,EFHB,EOMES,EPM2AIP1,FBXL2,FGD5,GADL1,GALNT15,GLB1,GPD1L,HACL1,KAT2B,KCNH8,LOC339862,LRRC3B,LRRFIP2,METTL6,MLH1,MRPS25,NEK10,NGLY1,NKIRAS1,NR1D2,NR2C2,OSBPL10,OXNAD1,OXSM,PDCD6IP,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RBSN,RFTN1,RPL15,SATB1,SGOL1,SH3BP5,SLC4A7,STAC,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMPPE,TOP2B,TRANK1,TRIM71,UBE2E1,UBE2E2,UBP1,ZCWPW2,ZNF385D,ZNF860"
TCGA.AA.A00N.01A	3	14801346	14922018	8	0.3149	NEUTRAL	NA	2	"C3orf20,FGD5"
TCGA.AA.A010.01A	3	14802960	15297545	71	-0.0298	NEUTRAL	NA	7	"C3orf20,CAPN7,FGD5,MRPS25,NR2C2,RBSN,SH3BP5"
TCGA.AA.A01F.01A	3	14813537	46622602	1318	-0.3356	NEUTRAL	NA	170	Too-Many
TCGA.A6.3808.01A	3	14905586	37323432	787	0.1743	NEUTRAL	NA	75	"ANKRD28,ARPP21,AZI2,BTD,CAPN7,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,COLQ,CRTAP,DAZL,DCLK3,DPH3,DYNC1LI1,EAF1,EFHB,EOMES,EPM2AIP1,FBXL2,FGD5,GADL1,GALNT15,GLB1,GOLGA4,GPD1L,HACL1,KAT2B,KCNH8,LOC339862,LRRC3B,LRRFIP2,METTL6,MLH1,MRPS25,NEK10,NGLY1,NKIRAS1,NR1D2,NR2C2,OSBPL10,OXNAD1,OXSM,PDCD6IP,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RBSN,RFTN1,RPL15,SATB1,SGOL1,SH3BP5,SLC4A7,STAC,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMPPE,TOP2B,TRANK1,TRIM71,UBE2E1,UBE2E2,UBP1,ZCWPW2,ZNF385D,ZNF860"
TCGA.AA.A00Q.01A	3	15045358	16535221	129	-0.4542	NEUTRAL	NA	15	"ANKRD28,BTD,CAPN7,COLQ,DPH3,EAF1,GALNT15,HACL1,METTL6,MRPS25,NR2C2,OXNAD1,RBSN,RFTN1,SH3BP5"
TCGA.AA.A00N.01A	3	15079468	15270422	25	-0.5025	NEUTRAL	NA	4	"CAPN7,MRPS25,NR2C2,RBSN"
TCGA.AG.3909.01A	3	15079468	15288173	33	-0.045	NEUTRAL	NA	4	"CAPN7,MRPS25,NR2C2,RBSN"
TCGA.DC.4749	3	15158014	197833757	52485	0.0155	NEUTRAL	NA	957	Too-Many
TCGA.AA.3850	3	15173477	15237292	21	-0.39955	NEUTRAL	NA	0	None
TCGA.A6.5661	3	15186561	139727266	35979	0.0032	NEUTRAL	NA	677	Too-Many
TCGA.AA.3850	3	15242087	16614125	493	0.16345	NEUTRAL	NA	12	"ANKRD28,BTD,CAPN7,COLQ,DPH3,EAF1,GALNT15,HACL1,METTL6,OXNAD1,RFTN1,SH3BP5"
TCGA.AG.4009.01A	3	15253573	15283653	14	-0.3974	NEUTRAL	NA	1	CAPN7
TCGA.AA.A029.01A	3	15258880	47463882	1619	-0.1395	NEUTRAL	NA	181	Too-Many
TCGA.AG.4009.01A	3	15286986	16630097	115	0.0742	NEUTRAL	NA	13	"ANKRD28,BTD,CAPN7,COLQ,DAZL,DPH3,EAF1,GALNT15,HACL1,METTL6,OXNAD1,RFTN1,SH3BP5"
TCGA.AG.A00Y.01A	3	15516356	36545861	604	-0.0074	NEUTRAL	NA	61	"ANKRD28,ARPP21,AZI2,BTD,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,COLQ,CRTAP,DAZL,DPH3,DYNC1LI1,EFHB,EOMES,FBXL2,GADL1,GALNT15,GLB1,GPD1L,HACL1,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXNAD1,OXSM,PDCD6IP,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RFTN1,RPL15,SATB1,SGOL1,SLC4A7,STAC,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMPPE,TOP2B,TRIM71,UBE2E1,UBE2E2,UBP1,ZCWPW2,ZNF385D,ZNF860"
TCGA.AU.3779	3	15555269	95043310	23533	-0.3109	NEUTRAL	NA	408	Too-Many
TCGA.AG.A023.01A	3	15613123	113866234	4479	-0.0386	NEUTRAL	NA	496	Too-Many
TCGA.AG.3909.01A	3	15624347	15642844	8	-0.3921	NEUTRAL	NA	1	HACL1
TCGA.AG.A01W.01A	3	15702465	38028003	757	0.0704	NEUTRAL	NA	67	"ANKRD28,ARPP21,AZI2,C3orf35,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,CTDSPL,DAZL,DCLK3,DPH3,DYNC1LI1,EFHB,EOMES,EPM2AIP1,FBXL2,GADL1,GALNT15,GLB1,GOLGA4,GPD1L,ITGA9,KAT2B,KCNH8,LOC339862,LRRC3B,LRRFIP2,MLH1,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXNAD1,OXSM,PDCD6IP,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RFTN1,RPL15,SATB1,SGOL1,SLC4A7,STAC,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMPPE,TOP2B,TRANK1,TRIM71,UBE2E1,UBE2E2,UBP1,ZCWPW2,ZNF385D,ZNF860"
TCGA.AZ.4684.01A	3	15807682	17255662	54	0.1075	NEUTRAL	NA	8	"ANKRD28,DAZL,DPH3,GALNT15,OXNAD1,PLCL2,RFTN1,TBC1D5"
TCGA.AG.3727	3	15810308	175399783	45940	-0.0025	NEUTRAL	NA	810	Too-Many
TCGA.AA.A010.01A	3	16249989	16268838	7	0.2452	NEUTRAL	NA	1	GALNT15
TCGA.AA.A010.01A	3	16313111	16344873	6	-0.3642	NEUTRAL	NA	1	OXNAD1
TCGA.AA.A01C.01A	3	16327808	46480750	1382	0.0871	NEUTRAL	NA	152	Too-Many
TCGA.AG.3909.01A	3	16535221	16646621	11	-0.3421	NEUTRAL	NA	2	"DAZL,RFTN1"
TCGA.AA.3982	3	16578456	31751508	5273	-0.1217	NEUTRAL	NA	34	"AZI2,CMC1,DAZL,EFHB,EOMES,GADL1,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXSM,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RPL15,SATB1,SGOL1,SLC4A7,STT3B,TBC1D5,TGFBR2,THRB,TOP2B,UBE2E1,UBE2E2,ZCWPW2,ZNF385D"
TCGA.AA.3844	3	16584553	31571326	5246	-0.3671	NEUTRAL	NA	32	"AZI2,CMC1,DAZL,EFHB,EOMES,GADL1,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OXSM,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RPL15,SATB1,SGOL1,SLC4A7,TBC1D5,TGFBR2,THRB,TOP2B,UBE2E1,UBE2E2,ZCWPW2,ZNF385D"
TCGA.AA.3811	3	16584849	31483453	5200	-0.4592	NEUTRAL	NA	32	"AZI2,CMC1,DAZL,EFHB,EOMES,GADL1,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OXSM,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RPL15,SATB1,SGOL1,SLC4A7,TBC1D5,TGFBR2,THRB,TOP2B,UBE2E1,UBE2E2,ZCWPW2,ZNF385D"
TCGA.AA.3941	3	16614125	31702920	5245	-0.3743	NEUTRAL	NA	34	"AZI2,CMC1,DAZL,EFHB,EOMES,GADL1,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXSM,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RPL15,SATB1,SGOL1,SLC4A7,STT3B,TBC1D5,TGFBR2,THRB,TOP2B,UBE2E1,UBE2E2,ZCWPW2,ZNF385D"
TCGA.AA.3530	3	16626703	36008560	6471	-0.1124	NEUTRAL	NA	52	"ARPP21,AZI2,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DAZL,DYNC1LI1,EFHB,EOMES,FBXL2,GADL1,GLB1,GPD1L,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXSM,PDCD6IP,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RPL15,SATB1,SGOL1,SLC4A7,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMPPE,TOP2B,TRIM71,UBE2E1,UBE2E2,UBP1,ZCWPW2,ZNF385D,ZNF860"
TCGA.AA.A010.01A	3	16638220	29985640	288	-0.1304	NEUTRAL	NA	30	"AZI2,CMC1,DAZL,EFHB,EOMES,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OXSM,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RPL15,SATB1,SGOL1,SLC4A7,TBC1D5,THRB,TOP2B,UBE2E1,UBE2E2,ZCWPW2,ZNF385D"
TCGA.AA.A00L.01A	3	16646621	17202416	8	-0.4501	NEUTRAL	NA	3	"DAZL,PLCL2,TBC1D5"
TCGA.AG.4009.01A	3	17051155	17415899	17	0.027	NEUTRAL	NA	2	"PLCL2,TBC1D5"
TCGA.AG.3909.01A	3	17051155	18438641	30	0.3234	NEUTRAL	NA	4	"LOC339862,PLCL2,SATB1,TBC1D5"
TCGA.AA.A00Q.01A	3	17051155	36587656	418	-0.3506	NEUTRAL	NA	52	"ARPP21,AZI2,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,EFHB,EOMES,FBXL2,GADL1,GLB1,GPD1L,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXSM,PDCD6IP,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RPL15,SATB1,SGOL1,SLC4A7,STAC,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMPPE,TOP2B,TRIM71,UBE2E1,UBE2E2,UBP1,ZCWPW2,ZNF385D,ZNF860"
TCGA.EI.6508	3	17106026	17520967	99	0.1567	NEUTRAL	NA	2	"PLCL2,TBC1D5"
TCGA.AA.3560	3	17219136	197833757	51770	0.1845	NEUTRAL	NA	943	Too-Many
TCGA.AG.3906.01A	3	17279604	17418000	7	-0.3746	NEUTRAL	NA	1	TBC1D5
TCGA.F5.6464	3	17375263	17481727	21	0.3753	NEUTRAL	NA	1	TBC1D5
TCGA.AG.4009.01A	3	17418000	19295134	19	-0.3076	NEUTRAL	NA	4	"KCNH8,LOC339862,SATB1,TBC1D5"
TCGA.AG.3906.01A	3	17425358	17469920	5	0.0437	NEUTRAL	NA	1	TBC1D5
TCGA.F5.6464	3	17482537	60412560	13162	-0.014	NEUTRAL	NA	343	Too-Many
TCGA.AG.3906.01A	3	17549917	19492640	21	-0.3175	NEUTRAL	NA	4	"KCNH8,LOC339862,SATB1,TBC1D5"
TCGA.EI.6508	3	17732943	41533101	7981	0.0695	NEUTRAL	NA	93	"ACAA1,ACVR2B,ARPP21,AZI2,C3orf35,CCR4,CCR8,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,CSRNP1,CTDSPL,CTNNB1,CX3CR1,DCLK3,DLEC1,DYNC1LI1,EFHB,EIF1B,ENTPD3,EOMES,EPM2AIP1,EXOG,FBXL2,GADL1,GLB1,GOLGA4,GORASP1,GPD1L,ITGA9,KAT2B,KCNH8,LOC339862,LRRC3B,LRRFIP2,MLH1,MOBP,MYD88,MYRIP,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXSM,OXSR1,PDCD6IP,PLCD1,PP2D1,RAB5A,RARB,RBMS3,RPL14,RPL15,RPSA,SATB1,SCN10A,SCN11A,SCN5A,SGOL1,SLC22A13,SLC22A14,SLC25A38,SLC4A7,STAC,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMPPE,TOP2B,TRANK1,TRIM71,TTC21A,UBE2E1,UBE2E2,UBP1,ULK4,VILL,WDR48,XIRP1,XYLB,ZCWPW2,ZNF385D,ZNF619,ZNF620,ZNF621,ZNF860"
TCGA.AG.3611.01A	3	18419633	19295134	10	-0.3271	NEUTRAL	NA	2	"KCNH8,SATB1"
TCGA.D5.6929	3	19165894	19433646	48	-0.3924	NEUTRAL	NA	1	KCNH8
TCGA.T9.A92H	3	19292503	19373383	19	0.2267	NEUTRAL	NA	1	KCNH8
TCGA.AG.3909.01A	3	19295134	23848710	70	0.2458	NEUTRAL	NA	9	"EFHB,KAT2B,KCNH8,PP2D1,RAB5A,SGOL1,UBE2E1,UBE2E2,ZNF385D"
TCGA.AG.4009.01A	3	19322668	25648615	108	0.0412	NEUTRAL	NA	15	"EFHB,KAT2B,KCNH8,NKIRAS1,NR1D2,PP2D1,RAB5A,RARB,RPL15,SGOL1,THRB,TOP2B,UBE2E1,UBE2E2,ZNF385D"
TCGA.AG.3611.01A	3	19322668	38592413	608	0.0805	NEUTRAL	NA	69	"ACAA1,ACVR2B,ARPP21,AZI2,C3orf35,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,CTDSPL,DCLK3,DLEC1,DYNC1LI1,EFHB,EOMES,EPM2AIP1,EXOG,FBXL2,GADL1,GLB1,GOLGA4,GPD1L,ITGA9,KAT2B,KCNH8,LRRC3B,LRRFIP2,MLH1,MYD88,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXSM,OXSR1,PDCD6IP,PLCD1,PP2D1,RAB5A,RARB,RBMS3,RPL15,SCN5A,SGOL1,SLC22A13,SLC22A14,SLC4A7,STAC,STT3B,SUSD5,TGFBR2,THRB,TMPPE,TOP2B,TRANK1,TRIM71,UBE2E1,UBE2E2,UBP1,VILL,XYLB,ZCWPW2,ZNF385D,ZNF860"
TCGA.T9.A92H	3	19382786	59953504	12384	-0.29	NEUTRAL	NA	340	Too-Many
TCGA.D5.6929	3	19436029	60084970	12502	-0.0279	NEUTRAL	NA	340	Too-Many
TCGA.D5.6932	3	19467883	197833757	51175	-0.1969	NEUTRAL	NA	940	Too-Many
TCGA.AG.3906.01A	3	19498251	27498057	195	-0.0241	NEUTRAL	NA	20	"EFHB,KAT2B,KCNH8,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OXSM,PP2D1,RAB5A,RARB,RPL15,SGOL1,SLC4A7,THRB,TOP2B,UBE2E1,UBE2E2,ZNF385D"
TCGA.AA.3509.01A	3	19574859	25542623	84	0.3668	NEUTRAL	NA	14	"EFHB,KAT2B,KCNH8,NKIRAS1,NR1D2,PP2D1,RAB5A,RARB,RPL15,SGOL1,THRB,UBE2E1,UBE2E2,ZNF385D"
TCGA.G4.6626	3	19595901	119350323	29149	0.2468	NEUTRAL	NA	499	Too-Many
TCGA.AA.3850	3	19813224	20441108	199	0.13075	NEUTRAL	NA	5	"EFHB,KAT2B,PP2D1,RAB5A,SGOL1"
TCGA.WS.AB45	3	19876801	31474216	4441	0.0121	NEUTRAL	NA	26	"AZI2,CMC1,EFHB,EOMES,GADL1,KAT2B,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OXSM,PP2D1,RAB5A,RARB,RBMS3,RPL15,SGOL1,SLC4A7,TGFBR2,THRB,TOP2B,UBE2E1,UBE2E2,ZCWPW2,ZNF385D"
TCGA.AZ.4684.01A	3	19921075	25634977	86	0.0283	NEUTRAL	NA	13	"EFHB,KAT2B,NKIRAS1,NR1D2,PP2D1,RAB5A,RARB,RPL15,SGOL1,THRB,UBE2E1,UBE2E2,ZNF385D"
TCGA.DM.A1D0	3	19923821	59961303	12231	0.0113	NEUTRAL	NA	339	Too-Many
TCGA.AA.A00L.01A	3	19924022	20202556	35	-0.3748	NEUTRAL	NA	5	"EFHB,KAT2B,PP2D1,RAB5A,SGOL1"
TCGA.AG.A01L.01A	3	19940206	112724372	4295	0.1874	NEUTRAL	NA	471	Too-Many
TCGA.AA.3693	3	20340478	108037147	25466	0.3039	NEUTRAL	NA	437	Too-Many
TCGA.A6.2686	3	20391437	68535068	16158	-0.381	NEUTRAL	NA	351	Too-Many
TCGA.CM.5862	3	20477075	21722699	487	-0.0944	NEUTRAL	NA	1	ZNF385D
TCGA.EI.6510	3	20638227	20645599	3	-0.4244	NEUTRAL	NA	0	None
TCGA.CM.5341	3	20975073	96271837	22287	-0.028	NEUTRAL	NA	389	Too-Many
TCGA.CM.6680	3	21416218	197833757	50595	0.009	NEUTRAL	NA	934	Too-Many
TCGA.A6.3810.01A	3	21462659	59999694	3410	-0.2894	NEUTRAL	NA	334	Too-Many
TCGA.AZ.6608	3	21841042	197833757	50270	0.3646	NEUTRAL	NA	933	Too-Many
TCGA.AA.3516	3	22190901	60227391	11560	-0.0015	NEUTRAL	NA	333	Too-Many
TCGA.AA.3972	3	22417756	27666361	1857	-0.0516	NEUTRAL	NA	13	"LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OXSM,RARB,RPL15,SLC4A7,THRB,TOP2B,UBE2E1,UBE2E2"
TCGA.AD.6889	3	22576403	52047420	8438	-0.0034	NEUTRAL	NA	266	Too-Many
TCGA.DC.6682	3	22593222	60817321	11782	-0.4638	NEUTRAL	NA	333	Too-Many
TCGA.AA.3850	3	23002973	23253378	85	0.11965	NEUTRAL	NA	1	UBE2E2
TCGA.AA.3850	3	23425958	23689200	79	0.01245	NEUTRAL	NA	1	UBE2E2
TCGA.AA.A00D.01A	3	23848710	24018676	18	-0.2218	NEUTRAL	NA	4	"NKIRAS1,NR1D2,RPL15,UBE2E1"
TCGA.AA.A00L.01A	3	23929030	36587656	318	-0.5065	NEUTRAL	NA	40	"ARPP21,AZI2,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,EOMES,FBXL2,GADL1,GLB1,GPD1L,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXSM,PDCD6IP,RARB,RBMS3,RPL15,SLC4A7,STAC,STT3B,SUSD5,TGFBR2,THRB,TMPPE,TOP2B,TRIM71,UBE2E1,UBP1,ZCWPW2,ZNF860"
TCGA.AG.A00C.01A	3	23959300	27498057	127	-0.1707	NEUTRAL	NA	10	"LRRC3B,NEK10,NGLY1,NR1D2,OXSM,RARB,RPL15,SLC4A7,THRB,TOP2B"
TCGA.AG.3909.01A	3	24006421	25678674	46	0.3079	NEUTRAL	NA	4	"NR1D2,RARB,THRB,TOP2B"
TCGA.AA.3850	3	24088240	24393146	157	-0.15255	NEUTRAL	NA	1	THRB
TCGA.AA.A00F.01A	3	24164347	35758730	274	0.0965	NEUTRAL	NA	35	"ARPP21,AZI2,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,EOMES,FBXL2,GADL1,GLB1,GPD1L,LRRC3B,NEK10,NGLY1,OSBPL10,OXSM,PDCD6IP,RARB,RBMS3,SLC4A7,STT3B,SUSD5,TGFBR2,THRB,TMPPE,TOP2B,TRIM71,UBP1,ZCWPW2,ZNF860"
TCGA.AG.4021	3	24449720	197833757	49424	0.0035	NEUTRAL	NA	928	Too-Many
TCGA.BM.6198	3	24745828	47363970	7299	0.07845	NEUTRAL	NA	149	Too-Many
TCGA.EI.6514	3	24977638	38396542	4520	-0.0348	NEUTRAL	NA	53	"ACAA1,ARPP21,AZI2,C3orf35,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,CTDSPL,DCLK3,DLEC1,DYNC1LI1,EOMES,EPM2AIP1,FBXL2,GADL1,GLB1,GOLGA4,GPD1L,ITGA9,LRRC3B,LRRFIP2,MLH1,MYD88,NEK10,NGLY1,OSBPL10,OXSM,OXSR1,PDCD6IP,PLCD1,RARB,RBMS3,SLC22A13,SLC22A14,SLC4A7,STAC,STT3B,SUSD5,TGFBR2,TMPPE,TOP2B,TRANK1,TRIM71,UBP1,VILL,XYLB,ZCWPW2,ZNF860"
TCGA.AG.4009.01A	3	25650647	25792552	33	-0.252	NEUTRAL	NA	2	"NGLY1,TOP2B"
TCGA.AG.3909.01A	3	25679619	25686744	4	-0.2674	NEUTRAL	NA	1	TOP2B
TCGA.AG.3909.01A	3	25760900	25805509	10	0.1987	NEUTRAL	NA	1	NGLY1
TCGA.AZ.4684.01A	3	25775335	27762885	73	0.2307	NEUTRAL	NA	6	"EOMES,LRRC3B,NEK10,NGLY1,OXSM,SLC4A7"
TCGA.D5.6931	3	25883240	34036439	2745	-0.3735	NEUTRAL	NA	29	"AZI2,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,EOMES,FBXL2,GADL1,GLB1,GPD1L,LRRC3B,NEK10,OSBPL10,PDCD6IP,RBMS3,SLC4A7,STT3B,SUSD5,TGFBR2,TMPPE,TRIM71,UBP1,ZCWPW2,ZNF860"
TCGA.A6.6648	3	25909187	26484876	160	-0.302	NEUTRAL	NA	0	None
TCGA.CM.5868	3	26445972	28492667	671	-0.4402	NEUTRAL	NA	7	"AZI2,CMC1,EOMES,LRRC3B,NEK10,SLC4A7,ZCWPW2"
TCGA.A6.6648	3	26485460	57984552	8950	0	NEUTRAL	NA	311	Too-Many
TCGA.AG.3909.01A	3	26751155	27498057	57	0.3726	NEUTRAL	NA	3	"LRRC3B,NEK10,SLC4A7"
TCGA.AG.4009.01A	3	26751155	27498057	57	0.025	NEUTRAL	NA	3	"LRRC3B,NEK10,SLC4A7"
TCGA.AG.3898	3	27125651	60179458	9686	0.0171	NEUTRAL	NA	322	Too-Many
TCGA.CM.5860	3	27125651	60225408	9735	-0.0025	NEUTRAL	NA	322	Too-Many
TCGA.AG.3893	3	27125651	133245960	29981	-0.0043	NEUTRAL	NA	599	Too-Many
TCGA.AG.4008	3	27130016	60789573	10049	0.0089	NEUTRAL	NA	322	Too-Many
TCGA.AA.3850	3	27296079	27847278	171	0.18115	NEUTRAL	NA	3	"EOMES,NEK10,SLC4A7"
TCGA.CK.5914.01A	3	27326053	27493852	43	0.1292	NEUTRAL	NA	2	"NEK10,SLC4A7"
TCGA.G4.6310	3	27497026	60379863	9768	-0.0244	NEUTRAL	NA	321	Too-Many
TCGA.AG.A00C.01A	3	27758619	28304775	6	0.3238	NEUTRAL	NA	2	"CMC1,EOMES"
TCGA.AA.A01Q.01A	3	27760018	29985640	34	-0.1411	NEUTRAL	NA	5	"AZI2,CMC1,EOMES,RBMS3,ZCWPW2"
TCGA.AA.A00N.01A	3	27762885	28368276	7	0.2669	NEUTRAL	NA	3	"AZI2,CMC1,EOMES"
TCGA.AG.4009.01A	3	27762885	33113994	145	0.0146	NEUTRAL	NA	19	"AZI2,CCR4,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,DYNC1LI1,EOMES,GADL1,GLB1,GPD1L,OSBPL10,RBMS3,STT3B,TGFBR2,TRIM71,ZCWPW2,ZNF860"
TCGA.AG.3906.01A	3	27762885	33592697	197	0.0025	NEUTRAL	NA	25	"AZI2,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,EOMES,FBXL2,GADL1,GLB1,GPD1L,OSBPL10,RBMS3,STT3B,SUSD5,TGFBR2,TMPPE,TRIM71,UBP1,ZCWPW2,ZNF860"
TCGA.AA.3850	3	27850433	27937773	25	-0.46265	NEUTRAL	NA	0	None
TCGA.AA.3850	3	27938712	27968946	19	0.15435	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	3	28304775	28381851	10	-0.2059	NEUTRAL	NA	2	"AZI2,CMC1"
TCGA.EI.6513	3	28326697	61080781	9909	0.0022	NEUTRAL	NA	319	Too-Many
TCGA.AG.A00C.01A	3	28357793	38022186	397	-0.1451	NEUTRAL	NA	36	"ARPP21,AZI2,C3orf35,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,CTDSPL,DCLK3,DYNC1LI1,EPM2AIP1,FBXL2,GADL1,GLB1,GOLGA4,GPD1L,ITGA9,LRRFIP2,MLH1,OSBPL10,PDCD6IP,RBMS3,STAC,STT3B,SUSD5,TGFBR2,TMPPE,TRANK1,TRIM71,UBP1,ZCWPW2,ZNF860"
TCGA.CK.5914.01A	3	28378179	28520278	7	-0.1799	NEUTRAL	NA	2	"AZI2,ZCWPW2"
TCGA.CM.5868	3	28502656	197833757	47944	0.2037	NEUTRAL	NA	917	Too-Many
TCGA.AA.3972	3	29791639	197833757	47443	0.0269	NEUTRAL	NA	916	Too-Many
TCGA.F5.6811.01A	3	30004590	33882799	230	0.189	NEUTRAL	NA	22	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GADL1,GLB1,GPD1L,OSBPL10,PDCD6IP,RBMS3,STT3B,SUSD5,TGFBR2,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.AA.A010.01A	3	30029586	33442395	164	0.333	NEUTRAL	NA	20	"CCR4,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GADL1,GLB1,GPD1L,OSBPL10,RBMS3,STT3B,SUSD5,TGFBR2,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.AA.A01Q.01A	3	30029586	33907795	159	0.1921	NEUTRAL	NA	22	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GADL1,GLB1,GPD1L,OSBPL10,PDCD6IP,RBMS3,STT3B,SUSD5,TGFBR2,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.WS.AB45	3	31483453	197833757	46731	0.0066	NEUTRAL	NA	913	Too-Many
TCGA.AA.3811	3	31483486	33570326	615	0.0023	NEUTRAL	NA	18	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GLB1,GPD1L,OSBPL10,STT3B,SUSD5,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.DM.A28C	3	31504955	60332000	8143	-0.0187	NEUTRAL	NA	313	Too-Many
TCGA.AA.3844	3	31589281	34200941	682	0.0411	NEUTRAL	NA	19	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GLB1,GPD1L,OSBPL10,PDCD6IP,STT3B,SUSD5,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.DM.A28M.01A	3	31659365	37365037	304	-0.1374	NEUTRAL	NA	27	"ARPP21,CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DCLK3,DYNC1LI1,EPM2AIP1,FBXL2,GLB1,GOLGA4,GPD1L,LRRFIP2,MLH1,OSBPL10,PDCD6IP,STAC,STT3B,SUSD5,TMPPE,TRANK1,TRIM71,UBP1,ZNF860"
TCGA.AA.3850	3	31687231	33545784	559	0.29975	NEUTRAL	NA	17	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GLB1,GPD1L,OSBPL10,SUSD5,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.AA.3509.01A	3	31703490	33612162	146	0.3447	NEUTRAL	NA	17	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GLB1,GPD1L,OSBPL10,SUSD5,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.AZ.4684.01A	3	31703490	33612162	146	-0.0675	NEUTRAL	NA	17	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GLB1,GPD1L,OSBPL10,SUSD5,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.AA.3967.01A	3	31789372	33194192	86	-0.0081	NEUTRAL	NA	14	"CCR4,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,GLB1,GPD1L,OSBPL10,SUSD5,TMPPE,TRIM71,ZNF860"
TCGA.CK.5914.01A	3	31917873	33065734	72	-0.1492	NEUTRAL	NA	11	"CCR4,CMTM6,CMTM7,CMTM8,CNOT10,DYNC1LI1,GLB1,GPD1L,OSBPL10,TRIM71,ZNF860"
TCGA.AG.3909.01A	3	31917873	33175615	80	0.0175	NEUTRAL	NA	13	"CCR4,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,GLB1,GPD1L,OSBPL10,TMPPE,TRIM71,ZNF860"
TCGA.AA.A00N.01A	3	31917873	33183822	92	-0.2156	NEUTRAL	NA	13	"CCR4,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,GLB1,GPD1L,OSBPL10,TMPPE,TRIM71,ZNF860"
TCGA.AA.A00D.01A	3	31921096	33414519	70	-0.2926	NEUTRAL	NA	15	"CCR4,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GLB1,GPD1L,OSBPL10,SUSD5,TMPPE,TRIM71,ZNF860"
TCGA.AG.3891.01A	3	32757663	32915261	16	0.3136	NEUTRAL	NA	2	"CNOT10,TRIM71"
TCGA.G4.6322	3	32923425	34484821	350	-0.4936	NEUTRAL	NA	10	"CCR4,CLASP2,CRTAP,FBXL2,GLB1,PDCD6IP,SUSD5,TMPPE,TRIM71,UBP1"
TCGA.AG.3891.01A	3	32927376	35758730	125	-0.1169	NEUTRAL	NA	11	"ARPP21,CCR4,CLASP2,CRTAP,FBXL2,GLB1,PDCD6IP,SUSD5,TMPPE,TRIM71,UBP1"
TCGA.CK.5914.01A	3	33134299	33183822	10	-0.4099	NEUTRAL	NA	3	"CRTAP,GLB1,TMPPE"
TCGA.AG.4009.01A	3	33165863	38035744	250	0.0766	NEUTRAL	NA	18	"ARPP21,C3orf35,CLASP2,CRTAP,CTDSPL,DCLK3,EPM2AIP1,FBXL2,GOLGA4,ITGA9,LRRFIP2,MLH1,PDCD6IP,STAC,SUSD5,TRANK1,UBP1,VILL"
TCGA.CK.5914.01A	3	33194192	33870292	77	0.1867	NEUTRAL	NA	5	"CLASP2,FBXL2,PDCD6IP,SUSD5,UBP1"
TCGA.AA.3967.01A	3	33194783	36888644	130	-0.5095	NEUTRAL	NA	9	"ARPP21,CLASP2,DCLK3,FBXL2,PDCD6IP,STAC,SUSD5,TRANK1,UBP1"
TCGA.AA.A00D.01A	3	33453036	35724314	26	-0.3357	NEUTRAL	NA	4	"ARPP21,CLASP2,PDCD6IP,UBP1"
TCGA.AA.3941	3	33541219	34191230	117	0.1337	NEUTRAL	NA	2	"CLASP2,PDCD6IP"
TCGA.AA.3982	3	33541219	34200941	119	0.1581	NEUTRAL	NA	2	"CLASP2,PDCD6IP"
TCGA.AA.3867	3	33545784	33736125	16	-0.1263	NEUTRAL	NA	1	CLASP2
TCGA.AA.3850	3	33562113	34191230	113	0.03245	NEUTRAL	NA	2	"CLASP2,PDCD6IP"
TCGA.AG.3909.01A	3	33576697	33592697	5	-0.1461	NEUTRAL	NA	1	CLASP2
TCGA.AG.3906.01A	3	33600758	33648036	13	-0.3711	NEUTRAL	NA	1	CLASP2
TCGA.AG.3909.01A	3	33600758	33840171	28	0.3737	NEUTRAL	NA	2	"CLASP2,PDCD6IP"
TCGA.AG.3906.01A	3	33648838	38065785	213	-0.0309	NEUTRAL	NA	15	"ARPP21,C3orf35,CLASP2,CTDSPL,DCLK3,EPM2AIP1,GOLGA4,ITGA9,LRRFIP2,MLH1,PDCD6IP,PLCD1,STAC,TRANK1,VILL"
TCGA.AA.3867	3	33737092	60512888	7674	0.2056	NEUTRAL	NA	296	Too-Many
TCGA.DM.A1HA	3	33815374	48972891	4205	0.0282	NEUTRAL	NA	149	Too-Many
TCGA.AG.3909.01A	3	33853505	33895324	13	-0.0142	NEUTRAL	NA	1	PDCD6IP
TCGA.CK.5914.01A	3	33877518	33905471	9	-0.3048	NEUTRAL	NA	1	PDCD6IP
TCGA.D5.6931	3	34039992	59974884	7168	-0.0014	NEUTRAL	NA	294	Too-Many
TCGA.AA.3844	3	34201974	36647489	793	-0.5076	NEUTRAL	NA	2	"ARPP21,STAC"
TCGA.AA.3982	3	34201974	36833788	873	-0.2827	NEUTRAL	NA	3	"ARPP21,DCLK3,STAC"
TCGA.G4.6322	3	34493104	77885600	14340	0.0027	NEUTRAL	NA	333	Too-Many
TCGA.A6.6138	3	35235121	37425089	682	0.0115	NEUTRAL	NA	8	"ARPP21,DCLK3,EPM2AIP1,GOLGA4,LRRFIP2,MLH1,STAC,TRANK1"
TCGA.AY.6196	3	35439545	43465503	2503	0.0573	NEUTRAL	NA	64	"ACAA1,ACKR2,ACVR2B,ANO10,ARPP21,C3orf35,CCDC13,CCK,CCR8,CSRNP1,CTDSPL,CTNNB1,CX3CR1,CYP8B1,DCLK3,DLEC1,EIF1B,ENTPD3,EPM2AIP1,EXOG,FAM198A,GOLGA4,GORASP1,HHATL,HIGD1A,ITGA9,KLHL40,KRBOX1,LRRFIP2,LYZL4,MLH1,MOBP,MYD88,MYRIP,NKTR,OXSR1,PLCD1,POMGNT2,RPL14,RPSA,SCN10A,SCN11A,SCN5A,SEC22C,SLC22A13,SLC22A14,SLC25A38,SNRK,SS18L2,STAC,TRAK1,TRANK1,TTC21A,ULK4,VILL,VIPR1,WDR48,XIRP1,XYLB,ZBTB47,ZNF619,ZNF620,ZNF621,ZNF662"
TCGA.F5.6811.01A	3	35723423	103671878	3851	0.1877	NEUTRAL	NA	390	Too-Many
TCGA.AA.3861.01A	3	35731516	37190339	88	-0.08	NEUTRAL	NA	7	"ARPP21,DCLK3,EPM2AIP1,LRRFIP2,MLH1,STAC,TRANK1"
TCGA.AA.3862.01A	3	35731516	37330668	93	-0.0143	NEUTRAL	NA	8	"ARPP21,DCLK3,EPM2AIP1,GOLGA4,LRRFIP2,MLH1,STAC,TRANK1"
TCGA.AA.A010.01A	3	35748419	37402661	113	0.2076	NEUTRAL	NA	8	"ARPP21,DCLK3,EPM2AIP1,GOLGA4,LRRFIP2,MLH1,STAC,TRANK1"
TCGA.AA.A00F.01A	3	35763075	35835161	8	-0.2872	NEUTRAL	NA	1	ARPP21
TCGA.AA.A01Q.01A	3	35763075	38035744	138	0.2426	NEUTRAL	NA	12	"ARPP21,C3orf35,CTDSPL,DCLK3,EPM2AIP1,GOLGA4,ITGA9,LRRFIP2,MLH1,STAC,TRANK1,VILL"
TCGA.AA.3518	3	35771772	60067395	6764	0.0058	NEUTRAL	NA	294	Too-Many
TCGA.AG.3891.01A	3	35785913	37034991	35	-0.1146	NEUTRAL	NA	6	"ARPP21,DCLK3,EPM2AIP1,MLH1,STAC,TRANK1"
TCGA.CK.5914.01A	3	35833887	36897922	31	0.3248	NEUTRAL	NA	4	"ARPP21,DCLK3,STAC,TRANK1"
TCGA.AA.3530	3	36021076	197833757	45386	-0.0231	NEUTRAL	NA	893	Too-Many
TCGA.DC.6155	3	36029319	197833757	45260	0.0132	NEUTRAL	NA	893	Too-Many
TCGA.AA.A00F.01A	3	36422084	36759464	12	0.0344	NEUTRAL	NA	2	"DCLK3,STAC"
TCGA.DM.A1D9	3	36516325	197833757	45240	0.0085	NEUTRAL	NA	893	Too-Many
TCGA.AG.A00Y.01A	3	36547234	58629319	2592	0.2726	NEUTRAL	NA	291	Too-Many
TCGA.AA.3509.01A	3	36570147	37105156	46	0.2441	NEUTRAL	NA	6	"DCLK3,EPM2AIP1,LRRFIP2,MLH1,STAC,TRANK1"
TCGA.AZ.4684.01A	3	36570147	37105156	46	-0.0907	NEUTRAL	NA	6	"DCLK3,EPM2AIP1,LRRFIP2,MLH1,STAC,TRANK1"
TCGA.AA.3844	3	36648367	74177371	12628	-0.134	NEUTRAL	NA	327	Too-Many
TCGA.AA.3941	3	36739846	46518222	2985	0.2387	NEUTRAL	NA	97	"ABHD5,ACAA1,ACKR2,ACVR2B,ANO10,C3orf35,CCDC13,CCK,CCR1,CCR2,CCR3,CCR5,CCR8,CCR9,CCRL2,CDCP1,CLEC3B,CSRNP1,CTDSPL,CTNNB1,CX3CR1,CXCR6,CYP8B1,DCLK3,DLEC1,EIF1B,ENTPD3,EPM2AIP1,EXOG,EXOSC7,FAM198A,FYCO1,GOLGA4,GORASP1,HHATL,HIGD1A,ITGA9,KIAA1143,KIF15,KLHL40,KRBOX1,LARS2,LIMD1,LRRFIP2,LTF,LYZL4,LZTFL1,MLH1,MOBP,MYD88,MYRIP,NKTR,OXSR1,PLCD1,POMGNT2,RPL14,RPSA,SACM1L,SCN10A,SCN11A,SCN5A,SEC22C,SLC22A13,SLC22A14,SLC25A38,SLC6A20,SNRK,SS18L2,TCAIM,TGM4,TMEM158,TMEM42,TOPAZ1,TRAK1,TRANK1,TTC21A,ULK4,VILL,VIPR1,WDR48,XCR1,XIRP1,XYLB,ZBTB47,ZDHHC3,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF619,ZNF620,ZNF621,ZNF660,ZNF662,ZNF852"
TCGA.AA.3850	3	36748859	37976699	386	0.18535	NEUTRAL	NA	9	"C3orf35,CTDSPL,DCLK3,EPM2AIP1,GOLGA4,ITGA9,LRRFIP2,MLH1,TRANK1"
TCGA.AA.3811	3	36749652	58931815	5767	-0.1102	NEUTRAL	NA	291	Too-Many
TCGA.AA.A00D.01A	3	36756767	36879814	9	0.1724	NEUTRAL	NA	2	"DCLK3,TRANK1"
TCGA.AA.A00Q.01A	3	36756767	36897922	11	0.3771	NEUTRAL	NA	2	"DCLK3,TRANK1"
TCGA.AA.A00L.01A	3	36756767	37058945	21	-0.0063	NEUTRAL	NA	4	"DCLK3,EPM2AIP1,MLH1,TRANK1"
TCGA.AA.3982	3	36834256	38026386	369	0.3298	NEUTRAL	NA	8	"C3orf35,CTDSPL,EPM2AIP1,GOLGA4,ITGA9,LRRFIP2,MLH1,TRANK1"
TCGA.AA.3967.01A	3	36893173	48600231	1212	-0.1846	NEUTRAL	NA	134	Too-Many
TCGA.AA.A00D.01A	3	36896657	37050274	9	-0.2489	NEUTRAL	NA	3	"EPM2AIP1,MLH1,TRANK1"
TCGA.AA.A00N.01A	3	37032718	37058945	11	-0.1392	NEUTRAL	NA	2	"EPM2AIP1,MLH1"
TCGA.AA.A00Q.01A	3	37033116	37081655	14	-0.2115	NEUTRAL	NA	2	"EPM2AIP1,MLH1"
TCGA.AA.A00F.01A	3	37045831	38022186	104	0.0589	NEUTRAL	NA	6	"C3orf35,CTDSPL,GOLGA4,ITGA9,LRRFIP2,MLH1"
TCGA.CK.5914.01A	3	37050274	37190339	38	0.3309	NEUTRAL	NA	2	"LRRFIP2,MLH1"
TCGA.AG.3891.01A	3	37061754	38105275	130	-0.0889	NEUTRAL	NA	9	"C3orf35,CTDSPL,DLEC1,GOLGA4,ITGA9,LRRFIP2,MLH1,PLCD1,VILL"
TCGA.AA.A00Q.01A	3	37144368	37555207	48	-0.1442	NEUTRAL	NA	4	"C3orf35,GOLGA4,ITGA9,LRRFIP2"
TCGA.AA.3870	3	37162396	197833757	45040	-0.0179	NEUTRAL	NA	888	Too-Many
TCGA.AZ.4684.01A	3	37169050	37365037	17	-0.1953	NEUTRAL	NA	2	"GOLGA4,LRRFIP2"
TCGA.AA.3509.01A	3	37170496	37365037	16	0.1884	NEUTRAL	NA	2	"GOLGA4,LRRFIP2"
TCGA.AA.A00N.01A	3	37190339	37337529	8	-0.3928	NEUTRAL	NA	2	"GOLGA4,LRRFIP2"
TCGA.AM.5820	3	37205014	37425089	30	-0.0987	NEUTRAL	NA	2	"GOLGA4,LRRFIP2"
TCGA.AA.A00D.01A	3	37284980	37376522	21	-0.1864	NEUTRAL	NA	1	GOLGA4
TCGA.AA.A00L.01A	3	37327428	37376522	18	-0.0628	NEUTRAL	NA	1	GOLGA4
TCGA.AG.3909.01A	3	37330668	37343649	6	0.0519	NEUTRAL	NA	1	GOLGA4
TCGA.CK.5914.01A	3	37343649	38022186	58	0.3431	NEUTRAL	NA	4	"C3orf35,CTDSPL,GOLGA4,ITGA9"
TCGA.A6.3808.01A	3	37366241	42672631	495	0.1803	NEUTRAL	NA	44	"ACAA1,ACVR2B,C3orf35,CCK,CCR8,CSRNP1,CTDSPL,CTNNB1,CX3CR1,DLEC1,EIF1B,ENTPD3,EXOG,GOLGA4,GORASP1,ITGA9,LYZL4,MOBP,MYD88,MYRIP,NKTR,OXSR1,PLCD1,RPL14,RPSA,SCN10A,SCN11A,SCN5A,SEC22C,SLC22A13,SLC22A14,SLC25A38,SS18L2,TRAK1,TTC21A,ULK4,VILL,VIPR1,WDR48,XIRP1,XYLB,ZNF619,ZNF620,ZNF621"
TCGA.AZ.4684.01A	3	37376522	47663645	1038	0.0105	NEUTRAL	NA	114	Too-Many
TCGA.DM.A28M.01A	3	37376522	62204493	2876	-0.1638	NEUTRAL	NA	288	Too-Many
TCGA.AA.A00L.01A	3	37378543	38542819	152	-0.4854	NEUTRAL	NA	15	"ACAA1,ACVR2B,C3orf35,CTDSPL,DLEC1,EXOG,GOLGA4,ITGA9,MYD88,OXSR1,PLCD1,SLC22A13,SLC22A14,VILL,XYLB"
TCGA.AA.3862.01A	3	37378543	43373634	551	-0.0084	NEUTRAL	NA	56	"ACAA1,ACKR2,ACVR2B,C3orf35,CCDC13,CCK,CCR8,CSRNP1,CTDSPL,CTNNB1,CX3CR1,CYP8B1,DLEC1,EIF1B,ENTPD3,EXOG,FAM198A,GOLGA4,GORASP1,HHATL,HIGD1A,ITGA9,KLHL40,KRBOX1,LYZL4,MOBP,MYD88,MYRIP,NKTR,OXSR1,PLCD1,POMGNT2,RPL14,RPSA,SCN10A,SCN11A,SCN5A,SEC22C,SLC22A13,SLC22A14,SLC25A38,SNRK,SS18L2,TRAK1,TTC21A,ULK4,VILL,VIPR1,WDR48,XIRP1,XYLB,ZBTB47,ZNF619,ZNF620,ZNF621,ZNF662"
TCGA.AA.3861.01A	3	37378543	44839309	651	0.0379	NEUTRAL	NA	70	"ABHD5,ACAA1,ACKR2,ACVR2B,ANO10,C3orf35,CCDC13,CCK,CCR8,CSRNP1,CTDSPL,CTNNB1,CX3CR1,CYP8B1,DLEC1,EIF1B,ENTPD3,EXOG,FAM198A,GOLGA4,GORASP1,HHATL,HIGD1A,ITGA9,KIAA1143,KIF15,KLHL40,KRBOX1,LYZL4,MOBP,MYD88,MYRIP,NKTR,OXSR1,PLCD1,POMGNT2,RPL14,RPSA,SCN10A,SCN11A,SCN5A,SEC22C,SLC22A13,SLC22A14,SLC25A38,SNRK,SS18L2,TCAIM,TOPAZ1,TRAK1,TTC21A,ULK4,VILL,VIPR1,WDR48,XIRP1,XYLB,ZBTB47,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF619,ZNF620,ZNF621,ZNF660,ZNF662,ZNF852"
TCGA.AM.5820	3	37426130	38614246	386	0.1866	NEUTRAL	NA	15	"ACAA1,ACVR2B,C3orf35,CTDSPL,DLEC1,EXOG,ITGA9,MYD88,OXSR1,PLCD1,SCN5A,SLC22A13,SLC22A14,VILL,XYLB"
TCGA.AA.A010.01A	3	37535969	37725314	14	0.3226	NEUTRAL	NA	1	ITGA9
TCGA.AA.A00Q.01A	3	37558958	38061630	52	-0.5091	NEUTRAL	NA	4	"CTDSPL,ITGA9,PLCD1,VILL"
TCGA.D5.6530	3	37983830	197833757	44797	0.016	NEUTRAL	NA	884	Too-Many
TCGA.AA.3864	3	37987773	68600487	9946	0.0291	NEUTRAL	NA	301	Too-Many
TCGA.F4.6704	3	37987773	197833757	44710	0.2946	NEUTRAL	NA	884	Too-Many
TCGA.G5.6641	3	37987773	197833757	44700	0	NEUTRAL	NA	884	Too-Many
TCGA.AG.3909.01A	3	37998518	38035744	9	-0.0351	NEUTRAL	NA	2	"CTDSPL,VILL"
TCGA.AG.A01W.01A	3	38030698	38089287	23	-0.4069	NEUTRAL	NA	3	"DLEC1,PLCD1,VILL"
TCGA.AA.A00N.01A	3	38035122	38080679	28	-0.3663	NEUTRAL	NA	2	"PLCD1,VILL"
TCGA.AG.A00C.01A	3	38035122	38105275	31	0.3098	NEUTRAL	NA	3	"DLEC1,PLCD1,VILL"
TCGA.AA.A00D.01A	3	38035122	38240172	43	-0.358	NEUTRAL	NA	6	"ACAA1,DLEC1,MYD88,OXSR1,PLCD1,VILL"
TCGA.AA.A00F.01A	3	38035122	38240172	44	0.3568	NEUTRAL	NA	6	"ACAA1,DLEC1,MYD88,OXSR1,PLCD1,VILL"
TCGA.AG.4009.01A	3	38037182	38080679	23	-0.2725	NEUTRAL	NA	2	"PLCD1,VILL"
TCGA.AA.A01Q.01A	3	38070917	38163530	8	0.2986	NEUTRAL	NA	2	"DLEC1,PLCD1"
TCGA.AA.A02K.01A	3	38078616	38130801	25	0.0979	NEUTRAL	NA	1	DLEC1
TCGA.AG.A01W.01A	3	38108066	38570728	111	-0.0122	NEUTRAL	NA	9	"ACAA1,ACVR2B,DLEC1,EXOG,MYD88,OXSR1,SLC22A13,SLC22A14,XYLB"
TCGA.AG.A00C.01A	3	38125621	38127680	3	-0.4263	NEUTRAL	NA	1	DLEC1
TCGA.AG.3906.01A	3	38125621	38545048	106	0.002	NEUTRAL	NA	9	"ACAA1,ACVR2B,DLEC1,EXOG,MYD88,OXSR1,SLC22A13,SLC22A14,XYLB"
TCGA.AG.A015.01A	3	38125621	49166500	1193	-0.1367	NEUTRAL	NA	144	Too-Many
TCGA.AG.A00C.01A	3	38129747	38224447	38	0.0302	NEUTRAL	NA	4	"ACAA1,DLEC1,MYD88,OXSR1"
TCGA.AA.A02K.01A	3	38133062	42685358	418	-0.2923	NEUTRAL	NA	38	"ACAA1,ACVR2B,CCK,CCR8,CSRNP1,CTNNB1,CX3CR1,DLEC1,EIF1B,ENTPD3,EXOG,GORASP1,LYZL4,MOBP,MYD88,MYRIP,NKTR,OXSR1,RPL14,RPSA,SCN10A,SCN11A,SCN5A,SEC22C,SLC22A13,SLC22A14,SLC25A38,SS18L2,TRAK1,TTC21A,ULK4,VIPR1,WDR48,XIRP1,XYLB,ZNF619,ZNF620,ZNF621"
TCGA.AG.4009.01A	3	38134235	38153654	14	-0.3189	NEUTRAL	NA	1	DLEC1
TCGA.AG.3909.01A	3	38134235	38164476	23	0.3434	NEUTRAL	NA	2	"ACAA1,DLEC1"
TCGA.AA.A00N.01A	3	38134235	38167007	24	0.2914	NEUTRAL	NA	2	"ACAA1,DLEC1"
TCGA.CK.5914.01A	3	38134235	38167656	25	0.1549	NEUTRAL	NA	2	"ACAA1,DLEC1"
TCGA.AG.3891.01A	3	38135097	38404387	74	-0.1379	NEUTRAL	NA	7	"ACAA1,DLEC1,MYD88,OXSR1,SLC22A13,SLC22A14,XYLB"
TCGA.AA.A010.01A	3	38136323	38149068	7	-0.359	NEUTRAL	NA	1	DLEC1
TCGA.AA.A010.01A	3	38149854	38207311	29	0.3475	NEUTRAL	NA	4	"ACAA1,DLEC1,MYD88,OXSR1"
TCGA.AG.4009.01A	3	38155791	38164476	9	0.0468	NEUTRAL	NA	2	"ACAA1,DLEC1"
TCGA.AA.A00Q.01A	3	38164476	38565355	84	-0.4757	NEUTRAL	NA	8	"ACAA1,ACVR2B,EXOG,MYD88,OXSR1,SLC22A13,SLC22A14,XYLB"
TCGA.AG.4009.01A	3	38167007	38182576	13	-0.2891	NEUTRAL	NA	2	"ACAA1,MYD88"
TCGA.CK.5914.01A	3	38169216	38182576	12	-0.448	NEUTRAL	NA	2	"ACAA1,MYD88"
TCGA.AA.A01Q.01A	3	38178028	38537812	71	0.1468	NEUTRAL	NA	8	"ACAA1,ACVR2B,EXOG,MYD88,OXSR1,SLC22A13,SLC22A14,XYLB"
TCGA.CK.5914.01A	3	38207311	38263017	6	0.121	NEUTRAL	NA	1	OXSR1
TCGA.AA.A010.01A	3	38224447	38294269	17	-0.4497	NEUTRAL	NA	1	OXSR1
TCGA.AG.4009.01A	3	38224447	38359638	36	0.2663	NEUTRAL	NA	3	"OXSR1,SLC22A13,SLC22A14"
TCGA.AG.A00C.01A	3	38232180	38357763	34	-0.2734	NEUTRAL	NA	3	"OXSR1,SLC22A13,SLC22A14"
TCGA.AA.A00F.01A	3	38257578	38357763	32	-0.0116	NEUTRAL	NA	3	"OXSR1,SLC22A13,SLC22A14"
TCGA.CK.5914.01A	3	38318810	38671755	71	-0.1056	NEUTRAL	NA	6	"ACVR2B,EXOG,SCN5A,SLC22A13,SLC22A14,XYLB"
TCGA.AA.A00N.01A	3	38347481	38671755	70	0.0626	NEUTRAL	NA	5	"ACVR2B,EXOG,SCN5A,SLC22A14,XYLB"
TCGA.AA.A00D.01A	3	38359638	38537812	28	-0.4535	NEUTRAL	NA	4	"ACVR2B,EXOG,SLC22A14,XYLB"
TCGA.AG.3909.01A	3	38359638	38537812	28	0.0381	NEUTRAL	NA	4	"ACVR2B,EXOG,SLC22A14,XYLB"
TCGA.AG.A00C.01A	3	38359638	38548333	32	0.13	NEUTRAL	NA	4	"ACVR2B,EXOG,SLC22A14,XYLB"
TCGA.AA.A00F.01A	3	38359638	38627142	40	0.2688	NEUTRAL	NA	5	"ACVR2B,EXOG,SCN5A,SLC22A14,XYLB"
TCGA.AA.A010.01A	3	38389981	38454374	18	0.3312	NEUTRAL	NA	1	XYLB
TCGA.AG.4009.01A	3	38389981	38519325	20	-0.3021	NEUTRAL	NA	2	"ACVR2B,XYLB"
TCGA.EI.6514	3	38401676	38629813	87	0.3071	NEUTRAL	NA	4	"ACVR2B,EXOG,SCN5A,XYLB"
TCGA.AA.3982	3	38404471	38888226	198	0.3012	NEUTRAL	NA	6	"ACVR2B,EXOG,SCN10A,SCN11A,SCN5A,XYLB"
TCGA.AG.3891.01A	3	38406643	38411500	5	0.3598	NEUTRAL	NA	1	XYLB
TCGA.AG.3891.01A	3	38414109	47956280	871	-0.0048	NEUTRAL	NA	104	Too-Many
TCGA.AG.4009.01A	3	38519655	38968252	90	0.1991	NEUTRAL	NA	5	"ACVR2B,EXOG,SCN10A,SCN11A,SCN5A"
TCGA.AA.A01Q.01A	3	38539103	38607850	14	-0.3439	NEUTRAL	NA	2	"EXOG,SCN5A"
TCGA.AA.A00D.01A	3	38539103	38628844	13	0.1075	NEUTRAL	NA	2	"EXOG,SCN5A"
TCGA.AA.A00L.01A	3	38545048	38655189	16	-0.054	NEUTRAL	NA	2	"EXOG,SCN5A"
TCGA.AG.3906.01A	3	38548333	38651214	25	-0.3593	NEUTRAL	NA	2	"EXOG,SCN5A"
TCGA.AA.3850	3	38553964	38836458	125	0.14445	NEUTRAL	NA	3	"EXOG,SCN10A,SCN5A"
TCGA.AG.3909.01A	3	38565355	38662286	26	0.1482	NEUTRAL	NA	2	"EXOG,SCN5A"
TCGA.AG.A00C.01A	3	38565355	38966867	79	-0.2441	NEUTRAL	NA	4	"EXOG,SCN10A,SCN11A,SCN5A"
TCGA.AG.A01W.01A	3	38595793	39111120	90	0.1055	NEUTRAL	NA	4	"SCN10A,SCN11A,SCN5A,WDR48"
TCGA.AA.A01Q.01A	3	38616751	39121155	75	0.138	NEUTRAL	NA	4	"SCN10A,SCN11A,SCN5A,WDR48"
TCGA.RU.A8FL	3	38619311	38684465	38	-0.3955	NEUTRAL	NA	1	SCN5A
TCGA.AA.A010.01A	3	38627142	38755417	22	0.2214	NEUTRAL	NA	2	"SCN10A,SCN5A"
TCGA.EI.6514	3	38632629	38972591	137	-0.075	NEUTRAL	NA	3	"SCN10A,SCN11A,SCN5A"
TCGA.AA.A00F.01A	3	38640359	38968252	52	-0.006	NEUTRAL	NA	3	"SCN10A,SCN11A,SCN5A"
TCGA.AG.3906.01A	3	38655189	39144913	84	-0.0579	NEUTRAL	NA	5	"GORASP1,SCN10A,SCN11A,SCN5A,WDR48"
TCGA.AM.5820	3	38686191	41736774	963	0.0875	NEUTRAL	NA	22	"CCR8,CSRNP1,CTNNB1,CX3CR1,EIF1B,ENTPD3,GORASP1,MOBP,MYRIP,RPL14,RPSA,SCN10A,SCN11A,SCN5A,SLC25A38,TTC21A,ULK4,WDR48,XIRP1,ZNF619,ZNF620,ZNF621"
TCGA.RU.A8FL	3	38686191	197833757	44562	-0.0601	NEUTRAL	NA	872	Too-Many
TCGA.AG.3611.01A	3	38738822	38991600	54	0.0416	NEUTRAL	NA	2	"SCN10A,SCN11A"
TCGA.AA.A00L.01A	3	38738822	41280603	167	-0.4792	NEUTRAL	NA	20	"CCR8,CSRNP1,CTNNB1,CX3CR1,EIF1B,ENTPD3,GORASP1,MOBP,MYRIP,RPL14,RPSA,SCN10A,SCN11A,SLC25A38,TTC21A,WDR48,XIRP1,ZNF619,ZNF620,ZNF621"
TCGA.AA.A00Q.01A	3	38738822	44598491	314	-0.3219	NEUTRAL	NA	47	"ABHD5,ACKR2,ANO10,CCDC13,CCK,CCR8,CSRNP1,CTNNB1,CX3CR1,CYP8B1,EIF1B,ENTPD3,FAM198A,GORASP1,HHATL,HIGD1A,KLHL40,KRBOX1,LYZL4,MOBP,MYRIP,NKTR,POMGNT2,RPL14,RPSA,SCN10A,SCN11A,SEC22C,SLC25A38,SNRK,SS18L2,TCAIM,TOPAZ1,TRAK1,TTC21A,ULK4,VIPR1,WDR48,XIRP1,ZBTB47,ZKSCAN7,ZNF445,ZNF619,ZNF620,ZNF621,ZNF662,ZNF852"
TCGA.AG.3732	3	38784028	50476377	2767	-0.0075	NEUTRAL	NA	180	Too-Many
TCGA.AA.A010.01A	3	38793670	38812718	8	0.303	NEUTRAL	NA	1	SCN10A
TCGA.AA.A010.01A	3	38830391	39152294	59	-0.1868	NEUTRAL	NA	5	"GORASP1,SCN10A,SCN11A,TTC21A,WDR48"
TCGA.AA.3850	3	38853159	39513277	196	0.24655	NEUTRAL	NA	11	"CCR8,CSRNP1,CX3CR1,GORASP1,MOBP,RPSA,SCN11A,SLC25A38,TTC21A,WDR48,XIRP1"
TCGA.AA.3982	3	38895670	44187691	1562	0.239	NEUTRAL	NA	41	"ABHD5,ACKR2,ANO10,CCDC13,CCK,CCR8,CSRNP1,CTNNB1,CX3CR1,CYP8B1,EIF1B,ENTPD3,FAM198A,GORASP1,HHATL,HIGD1A,KLHL40,KRBOX1,LYZL4,MOBP,MYRIP,NKTR,POMGNT2,RPL14,RPSA,SCN11A,SEC22C,SLC25A38,SNRK,SS18L2,TRAK1,TTC21A,ULK4,VIPR1,WDR48,XIRP1,ZBTB47,ZNF619,ZNF620,ZNF621,ZNF662"
TCGA.A6.6138	3	38938844	60945113	6307	0.0039	NEUTRAL	NA	270	Too-Many
TCGA.AA.A00D.01A	3	38962540	39942270	58	-0.2433	NEUTRAL	NA	12	"CCR8,CSRNP1,CX3CR1,GORASP1,MOBP,MYRIP,RPSA,SCN11A,SLC25A38,TTC21A,WDR48,XIRP1"
TCGA.AG.A00C.01A	3	38968252	39431869	64	0.1707	NEUTRAL	NA	9	"CCR8,CSRNP1,CX3CR1,GORASP1,SCN11A,SLC25A38,TTC21A,WDR48,XIRP1"
TCGA.CK.5914.01A	3	38968252	39437849	69	-0.2701	NEUTRAL	NA	9	"CCR8,CSRNP1,CX3CR1,GORASP1,SCN11A,SLC25A38,TTC21A,WDR48,XIRP1"
TCGA.AG.4009.01A	3	38986861	39125604	14	-0.2361	NEUTRAL	NA	2	"SCN11A,WDR48"
TCGA.EI.6514	3	38995531	47002890	2395	0.2725	NEUTRAL	NA	87	"ABHD5,ACKR2,ALS2CL,ANO10,CCDC12,CCDC13,CCK,CCR1,CCR2,CCR3,CCR5,CCR8,CCR9,CCRL2,CDCP1,CLEC3B,CSRNP1,CTNNB1,CX3CR1,CXCR6,CYP8B1,EIF1B,ENTPD3,EXOSC7,FAM198A,FYCO1,GORASP1,HHATL,HIGD1A,KIAA1143,KIF15,KLHL40,KRBOX1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LYZL4,LZTFL1,MOBP,MYL3,MYRIP,NKTR,POMGNT2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,RPL14,RPSA,RTP3,SACM1L,SEC22C,SLC25A38,SLC6A20,SNRK,SS18L2,TCAIM,TDGF1,TGM4,TMEM158,TMEM42,TMIE,TOPAZ1,TRAK1,TTC21A,ULK4,VIPR1,WDR48,XCR1,XIRP1,ZBTB47,ZDHHC3,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF619,ZNF620,ZNF621,ZNF660,ZNF662,ZNF852"
TCGA.AA.3872	3	39018837	61127303	6384	-0.3614	NEUTRAL	NA	269	Too-Many
TCGA.AG.3611.01A	3	39093472	39116177	7	-0.3445	NEUTRAL	NA	1	WDR48
TCGA.AG.3909.01A	3	39093472	39226073	55	-0.2334	NEUTRAL	NA	5	"CSRNP1,GORASP1,TTC21A,WDR48,XIRP1"
TCGA.AG.3611.01A	3	39118568	40503383	75	0.0207	NEUTRAL	NA	14	"CCR8,CSRNP1,CX3CR1,EIF1B,ENTPD3,GORASP1,MOBP,MYRIP,RPL14,RPSA,SLC25A38,TTC21A,WDR48,XIRP1"
TCGA.AA.A01Q.01A	3	39125604	39453711	47	-0.2024	NEUTRAL	NA	9	"CCR8,CSRNP1,CX3CR1,GORASP1,RPSA,SLC25A38,TTC21A,WDR48,XIRP1"
TCGA.AA.A00N.01A	3	39139726	39149263	8	-0.0159	NEUTRAL	NA	2	"GORASP1,TTC21A"
TCGA.AG.3906.01A	3	39149263	39186440	27	0.2321	NEUTRAL	NA	3	"CSRNP1,GORASP1,TTC21A"
TCGA.AG.A01W.01A	3	39151533	40268330	44	0.1291	NEUTRAL	NA	9	"CCR8,CSRNP1,CX3CR1,MOBP,MYRIP,RPSA,SLC25A38,TTC21A,XIRP1"
TCGA.AF.3914.01A	3	39162451	42445477	153	0.058	NEUTRAL	NA	20	"CCK,CCR8,CSRNP1,CTNNB1,CX3CR1,EIF1B,ENTPD3,LYZL4,MOBP,MYRIP,RPL14,RPSA,SLC25A38,TRAK1,TTC21A,ULK4,XIRP1,ZNF619,ZNF620,ZNF621"
TCGA.AA.A00N.01A	3	39166791	39425162	24	-0.1191	NEUTRAL	NA	6	"CCR8,CSRNP1,CX3CR1,SLC25A38,TTC21A,XIRP1"
TCGA.AG.3906.01A	3	39187932	42680079	167	-0.0921	NEUTRAL	NA	23	"CCK,CCR8,CSRNP1,CTNNB1,CX3CR1,EIF1B,ENTPD3,LYZL4,MOBP,MYRIP,NKTR,RPL14,RPSA,SEC22C,SLC25A38,SS18L2,TRAK1,ULK4,VIPR1,XIRP1,ZNF619,ZNF620,ZNF621"
TCGA.AG.4009.01A	3	39306896	40573984	66	0.1728	NEUTRAL	NA	12	"CCR8,CX3CR1,EIF1B,ENTPD3,MOBP,MYRIP,RPL14,RPSA,SLC25A38,ZNF619,ZNF620,ZNF621"
TCGA.AA.3850	3	39516484	39958900	151	-0.09855	NEUTRAL	NA	2	"MOBP,MYRIP"
TCGA.AG.A00C.01A	3	39543530	40299550	17	-0.3648	NEUTRAL	NA	2	"MOBP,MYRIP"
TCGA.AA.A01Q.01A	3	39543530	40498762	31	0.3715	NEUTRAL	NA	4	"EIF1B,ENTPD3,MOBP,MYRIP"
TCGA.AA.A00F.01A	3	39942270	40299550	15	-0.1371	NEUTRAL	NA	1	MYRIP
TCGA.AA.3850	3	40045099	40410935	118	0.00205	NEUTRAL	NA	2	"EIF1B,MYRIP"
TCGA.AG.A00C.01A	3	40351362	40573984	33	0.3598	NEUTRAL	NA	6	"EIF1B,ENTPD3,RPL14,ZNF619,ZNF620,ZNF621"
TCGA.AA.A00F.01A	3	40351362	44844258	227	0.2487	NEUTRAL	NA	41	"ABHD5,ACKR2,ANO10,CCDC13,CCK,CTNNB1,CYP8B1,EIF1B,ENTPD3,FAM198A,HHATL,HIGD1A,KIAA1143,KIF15,KLHL40,KRBOX1,LYZL4,NKTR,POMGNT2,RPL14,SEC22C,SNRK,SS18L2,TCAIM,TOPAZ1,TRAK1,ULK4,VIPR1,ZBTB47,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF619,ZNF620,ZNF621,ZNF660,ZNF662,ZNF852"
TCGA.AA.A00D.01A	3	40352367	40429477	4	-0.1426	NEUTRAL	NA	2	"EIF1B,ENTPD3"
TCGA.AF.A56N	3	40408224	60932619	5816	0.018	NEUTRAL	NA	257	Too-Many
TCGA.AA.3850	3	40414988	40688938	64	0.37355	NEUTRAL	NA	5	"ENTPD3,RPL14,ZNF619,ZNF620,ZNF621"
TCGA.AG.A01W.01A	3	40417343	42662337	132	-0.0386	NEUTRAL	NA	14	"CCK,CTNNB1,ENTPD3,LYZL4,NKTR,RPL14,SEC22C,SS18L2,TRAK1,ULK4,VIPR1,ZNF619,ZNF620,ZNF621"
TCGA.AA.A01Q.01A	3	40499351	40503383	4	-0.3488	NEUTRAL	NA	1	RPL14
TCGA.AA.A00D.01A	3	40499351	42672631	85	-0.3421	NEUTRAL	NA	13	"CCK,CTNNB1,LYZL4,NKTR,RPL14,SEC22C,SS18L2,TRAK1,ULK4,VIPR1,ZNF619,ZNF620,ZNF621"
TCGA.AA.A01Q.01A	3	40519375	42555189	51	0.1514	NEUTRAL	NA	9	"CCK,CTNNB1,LYZL4,TRAK1,ULK4,VIPR1,ZNF619,ZNF620,ZNF621"
TCGA.AG.3611.01A	3	40547767	40573564	9	0.2306	NEUTRAL	NA	2	"ZNF620,ZNF621"
TCGA.AG.3611.01A	3	40573984	41756676	15	-0.2375	NEUTRAL	NA	3	"CTNNB1,ULK4,ZNF621"
TCGA.AA.A010.01A	3	40573984	41938264	33	-0.1224	NEUTRAL	NA	3	"CTNNB1,ULK4,ZNF621"
TCGA.CK.5914.01A	3	40573984	42680278	103	0.1618	NEUTRAL	NA	10	"CCK,CTNNB1,LYZL4,NKTR,SEC22C,SS18L2,TRAK1,ULK4,VIPR1,ZNF621"
TCGA.AA.3850	3	40693856	41588602	308	-0.04395	NEUTRAL	NA	2	"CTNNB1,ULK4"
TCGA.AG.4009.01A	3	41265478	41268697	5	-0.2707	NEUTRAL	NA	1	CTNNB1
TCGA.AG.A00C.01A	3	41265478	42448327	66	-0.1748	NEUTRAL	NA	5	"CCK,CTNNB1,LYZL4,TRAK1,ULK4"
TCGA.AG.3909.01A	3	41265478	42700987	105	0.0229	NEUTRAL	NA	10	"CCK,CTNNB1,LYZL4,NKTR,SEC22C,SS18L2,TRAK1,ULK4,VIPR1,ZBTB47"
TCGA.AG.4009.01A	3	41274782	41877305	24	0.0255	NEUTRAL	NA	2	"CTNNB1,ULK4"
TCGA.AG.A016.01A	3	41277187	42700987	94	-0.0755	NEUTRAL	NA	10	"CCK,CTNNB1,LYZL4,NKTR,SEC22C,SS18L2,TRAK1,ULK4,VIPR1,ZBTB47"
TCGA.AA.A00L.01A	3	41439529	42226160	10	0.1845	NEUTRAL	NA	2	"TRAK1,ULK4"
TCGA.AA.3850	3	41589963	43274978	486	0.23895	NEUTRAL	NA	19	"ACKR2,CCDC13,CCK,CYP8B1,FAM198A,HHATL,HIGD1A,KLHL40,KRBOX1,LYZL4,NKTR,POMGNT2,SEC22C,SS18L2,TRAK1,ULK4,VIPR1,ZBTB47,ZNF662"
TCGA.AD.A5EK	3	41650338	197833757	43354	-0.0285	NEUTRAL	NA	851	Too-Many
TCGA.AG.3611.01A	3	41759193	48732476	737	0.065	NEUTRAL	NA	101	Too-Many
TCGA.AG.4009.01A	3	41925329	41952743	7	-0.2954	NEUTRAL	NA	1	ULK4
TCGA.AG.4009.01A	3	41954246	42448327	30	0.2164	NEUTRAL	NA	4	"CCK,LYZL4,TRAK1,ULK4"
TCGA.AA.A00L.01A	3	42229505	44700151	161	-0.3504	NEUTRAL	NA	29	"ABHD5,ACKR2,ANO10,CCDC13,CCK,CYP8B1,FAM198A,HHATL,HIGD1A,KLHL40,KRBOX1,LYZL4,NKTR,POMGNT2,SEC22C,SNRK,SS18L2,TCAIM,TOPAZ1,TRAK1,VIPR1,ZBTB47,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF660,ZNF662,ZNF852"
TCGA.AG.3882	3	42557198	61114155	5255	-0.2571	NEUTRAL	NA	247	Too-Many
TCGA.AG.4009.01A	3	42560665	42590031	11	-0.4771	NEUTRAL	NA	2	"SEC22C,VIPR1"
TCGA.AA.A01Q.01A	3	42560665	42602587	16	-0.1842	NEUTRAL	NA	2	"SEC22C,VIPR1"
TCGA.AG.A00C.01A	3	42560665	42738949	52	0.2632	NEUTRAL	NA	7	"HHATL,KLHL40,NKTR,SEC22C,SS18L2,VIPR1,ZBTB47"
TCGA.AF.3914.01A	3	42576769	42678329	23	-0.0204	NEUTRAL	NA	4	"NKTR,SEC22C,SS18L2,VIPR1"
TCGA.AG.4009.01A	3	42594703	42662867	13	0.0174	NEUTRAL	NA	3	"NKTR,SEC22C,SS18L2"
TCGA.AA.A01Q.01A	3	42604968	42705691	26	0.3451	NEUTRAL	NA	4	"NKTR,SEC22C,SS18L2,ZBTB47"
TCGA.AG.4009.01A	3	42671965	42687332	13	-0.4073	NEUTRAL	NA	1	NKTR
TCGA.AA.A00D.01A	3	42674084	42727082	13	0.1079	NEUTRAL	NA	3	"KLHL40,NKTR,ZBTB47"
TCGA.AG.4009.01A	3	42705691	42739594	13	-0.2707	NEUTRAL	NA	3	"HHATL,KLHL40,ZBTB47"
TCGA.AG.3906.01A	3	42705691	44438193	79	-0.1385	NEUTRAL	NA	16	"ABHD5,ACKR2,ANO10,CCDC13,CYP8B1,FAM198A,HHATL,HIGD1A,KLHL40,KRBOX1,POMGNT2,SNRK,TCAIM,TOPAZ1,ZBTB47,ZNF662"
TCGA.AG.A01W.01A	3	42725437	42930837	26	-0.071	NEUTRAL	NA	6	"ACKR2,CCDC13,CYP8B1,HHATL,HIGD1A,KLHL40"
TCGA.AA.A01Q.01A	3	42727082	42741183	14	-0.3676	NEUTRAL	NA	2	"HHATL,KLHL40"
TCGA.AA.A010.01A	3	42727082	42754606	18	-0.1651	NEUTRAL	NA	3	"CCDC13,HHATL,KLHL40"
TCGA.AF.3914.01A	3	42727082	46726968	328	0.0064	NEUTRAL	NA	52	"ABHD5,ACKR2,ALS2CL,ANO10,CCDC13,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,CYP8B1,EXOSC7,FAM198A,FYCO1,HHATL,HIGD1A,KIAA1143,KIF15,KLHL40,KRBOX1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,POMGNT2,RTP3,SACM1L,SLC6A20,SNRK,TCAIM,TDGF1,TGM4,TMEM158,TMEM42,TOPAZ1,XCR1,ZDHHC3,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF660,ZNF662,ZNF852"
TCGA.AG.A016.01A	3	42727082	48643156	653	-0.0253	NEUTRAL	NA	87	"ABHD5,ACKR2,ALS2CL,ANO10,ATRIP,CAMP,CCDC12,CCDC13,CCDC51,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDC25A,CDCP1,CLEC3B,COL7A1,CSPG5,CXCR6,CYP8B1,DHX30,ELP6,EXOSC7,FAM198A,FBXW12,FYCO1,HHATL,HIGD1A,KIAA1143,KIF15,KIF9,KLHL18,KLHL40,KRBOX1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MAP4,MYL3,NBEAL2,NME6,PFKFB4,PLXNB1,POMGNT2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,PTPN23,RTP3,SACM1L,SCAP,SETD2,SHISA5,SLC6A20,SMARCC1,SNRK,SPINK8,TCAIM,TDGF1,TGM4,TMA7,TMEM158,TMEM42,TMIE,TOPAZ1,TREX1,UCN2,UQCRC1,XCR1,ZDHHC3,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF589,ZNF660,ZNF662,ZNF852"
TCGA.AA.A02K.01A	3	42727094	42781076	22	-0.3227	NEUTRAL	NA	3	"CCDC13,HHATL,KLHL40"
TCGA.AA.A00D.01A	3	42729633	42742182	14	-0.3146	NEUTRAL	NA	2	"HHATL,KLHL40"
TCGA.CK.5914.01A	3	42732300	42750420	12	-0.1135	NEUTRAL	NA	3	"CCDC13,HHATL,KLHL40"
TCGA.AA.A00N.01A	3	42738274	44496571	109	0.1797	NEUTRAL	NA	15	"ABHD5,ACKR2,ANO10,CCDC13,CYP8B1,FAM198A,HHATL,HIGD1A,KRBOX1,POMGNT2,SNRK,TCAIM,TOPAZ1,ZNF445,ZNF662"
TCGA.AG.A00C.01A	3	42739594	44496571	75	-0.0615	NEUTRAL	NA	15	"ABHD5,ACKR2,ANO10,CCDC13,CYP8B1,FAM198A,HHATL,HIGD1A,KRBOX1,POMGNT2,SNRK,TCAIM,TOPAZ1,ZNF445,ZNF662"
TCGA.AG.4009.01A	3	42740183	42917135	24	0.2322	NEUTRAL	NA	5	"ACKR2,CCDC13,CYP8B1,HHATL,HIGD1A"
TCGA.AA.A01Q.01A	3	42742182	46414367	266	0.0915	NEUTRAL	NA	44	"ABHD5,ACKR2,ANO10,CCDC13,CCR1,CCR2,CCR3,CCR5,CCR9,CDCP1,CLEC3B,CXCR6,CYP8B1,EXOSC7,FAM198A,FYCO1,HHATL,HIGD1A,KIAA1143,KIF15,KRBOX1,LARS2,LIMD1,LZTFL1,POMGNT2,SACM1L,SLC6A20,SNRK,TCAIM,TGM4,TMEM158,TMEM42,TOPAZ1,XCR1,ZDHHC3,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF660,ZNF662,ZNF852"
TCGA.CK.5914.01A	3	42798509	44488816	83	-0.176	NEUTRAL	NA	14	"ABHD5,ACKR2,ANO10,CCDC13,CYP8B1,FAM198A,HIGD1A,KRBOX1,POMGNT2,SNRK,TCAIM,TOPAZ1,ZNF445,ZNF662"
TCGA.AA.A02K.01A	3	42798527	44854521	129	-0.2126	NEUTRAL	NA	23	"ABHD5,ACKR2,ANO10,CCDC13,CYP8B1,FAM198A,HIGD1A,KIAA1143,KIF15,KRBOX1,POMGNT2,SNRK,TCAIM,TOPAZ1,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF660,ZNF662,ZNF852"
TCGA.A6.3808.01A	3	42826764	44402808	73	-0.0939	NEUTRAL	NA	12	"ABHD5,ACKR2,ANO10,CYP8B1,FAM198A,HIGD1A,KRBOX1,POMGNT2,SNRK,TCAIM,TOPAZ1,ZNF662"
TCGA.AA.A00D.01A	3	42915781	44839309	88	-0.345	NEUTRAL	NA	20	"ABHD5,ANO10,CYP8B1,FAM198A,KIAA1143,KIF15,KRBOX1,POMGNT2,SNRK,TCAIM,TOPAZ1,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF660,ZNF662,ZNF852"
TCGA.AG.4009.01A	3	42949477	44842881	88	-0.0839	NEUTRAL	NA	19	"ABHD5,ANO10,FAM198A,KIAA1143,KIF15,KRBOX1,POMGNT2,SNRK,TCAIM,TOPAZ1,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF660,ZNF662,ZNF852"
TCGA.AG.3909.01A	3	43073730	44496571	50	0.2408	NEUTRAL	NA	8	"ABHD5,ANO10,FAM198A,POMGNT2,SNRK,TCAIM,TOPAZ1,ZNF445"
TCGA.AA.3850	3	43285395	53456606	1814	0.29185	NEUTRAL	NA	198	Too-Many
TCGA.AA.A010.01A	3	43344649	44496571	66	0.1146	NEUTRAL	NA	6	"ABHD5,ANO10,SNRK,TCAIM,TOPAZ1,ZNF445"
TCGA.AG.A01W.01A	3	43449058	44423922	50	0.0368	NEUTRAL	NA	4	"ABHD5,ANO10,TCAIM,TOPAZ1"
TCGA.AY.6196	3	43467290	48778026	1198	-0.4969	NEUTRAL	NA	81	"ABHD5,ALS2CL,ANO10,ATRIP,CAMP,CCDC12,CCDC51,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDC25A,CDCP1,CELSR3,CLEC3B,COL7A1,CSPG5,CXCR6,DHX30,ELP6,EXOSC7,FBXW12,FYCO1,IP6K2,KIAA1143,KIF15,KIF9,KLHL18,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MAP4,MYL3,NBEAL2,NCKIPSD,NME6,PFKFB4,PLXNB1,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,PTPN23,RTP3,SACM1L,SCAP,SETD2,SHISA5,SLC26A6,SLC6A20,SMARCC1,SPINK8,TCAIM,TDGF1,TGM4,TMA7,TMEM158,TMEM42,TMEM89,TMIE,TOPAZ1,TREX1,UCN2,UQCRC1,XCR1,ZDHHC3,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF589,ZNF660,ZNF852"
TCGA.F5.6864	3	43559495	197793904	43036	-0.0076	NEUTRAL	NA	831	Too-Many
TCGA.AF.2691	3	44273920	87386028	13335	-0.3347	NEUTRAL	NA	274	Too-Many
TCGA.AG.3580	3	44286014	60312355	4317	-0.4057	NEUTRAL	NA	229	Too-Many
TCGA.AG.3906.01A	3	44441800	44598491	12	0.1609	NEUTRAL	NA	4	"TCAIM,ZKSCAN7,ZNF445,ZNF852"
TCGA.AG.3909.01A	3	44598491	44763743	20	-0.4959	NEUTRAL	NA	5	"ZKSCAN7,ZNF197,ZNF35,ZNF502,ZNF660"
TCGA.AA.A00Q.01A	3	44606927	44955044	73	0.0205	NEUTRAL	NA	10	"KIAA1143,KIF15,TGM4,TMEM42,ZKSCAN7,ZNF197,ZNF35,ZNF501,ZNF502,ZNF660"
TCGA.AG.A01W.01A	3	44645631	47008913	302	0.0011	NEUTRAL	NA	41	"ALS2CL,CCDC12,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,KIAA1143,KIF15,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MYL3,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,RTP3,SACM1L,SLC6A20,TDGF1,TGM4,TMEM158,TMEM42,TMIE,XCR1,ZDHHC3,ZNF197,ZNF35,ZNF501,ZNF502"
TCGA.AG.3906.01A	3	44670638	44846482	33	-0.1117	NEUTRAL	NA	6	"KIAA1143,KIF15,ZNF197,ZNF35,ZNF501,ZNF502"
TCGA.AA.A017.01A	3	44683400	54603752	1486	-0.4611	NEUTRAL	NA	195	Too-Many
TCGA.AA.A00N.01A	3	44687904	44841779	25	0.0262	NEUTRAL	NA	6	"KIAA1143,KIF15,ZNF197,ZNF35,ZNF501,ZNF502"
TCGA.AG.A00C.01A	3	44692510	44842881	24	-0.0491	NEUTRAL	NA	5	"KIAA1143,KIF15,ZNF35,ZNF501,ZNF502"
TCGA.AG.3909.01A	3	44775867	44847300	22	0.1683	NEUTRAL	NA	3	"KIAA1143,KIF15,ZNF501"
TCGA.AA.A00L.01A	3	44794791	44903351	38	-0.2153	NEUTRAL	NA	2	"KIAA1143,KIF15"
TCGA.CK.5914.01A	3	44802935	44847300	17	-0.1224	NEUTRAL	NA	2	"KIAA1143,KIF15"
TCGA.AA.A00A.01A	3	44835692	44893679	27	0.009	NEUTRAL	NA	1	KIF15
TCGA.AA.A00D.01A	3	44841779	44893679	24	0.2935	NEUTRAL	NA	1	KIF15
TCGA.AA.A010.01A	3	44853624	44869651	7	-0.406	NEUTRAL	NA	1	KIF15
TCGA.AA.A02K.01A	3	44856357	44893672	15	0.1239	NEUTRAL	NA	1	KIF15
TCGA.AA.A02K.01A	3	44894205	46755708	216	-0.3192	NEUTRAL	NA	30	"ALS2CL,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,KIF15,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,PRSS50,RTP3,SACM1L,SLC6A20,TDGF1,TGM4,TMEM158,TMEM42,TMIE,XCR1,ZDHHC3"
TCGA.AA.3862.01A	3	44894205	47048543	252	-0.0714	NEUTRAL	NA	37	"ALS2CL,CCDC12,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,KIF15,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MYL3,NBEAL2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,RTP3,SACM1L,SLC6A20,TDGF1,TGM4,TMEM158,TMEM42,TMIE,XCR1,ZDHHC3"
TCGA.AA.3861.01A	3	44894205	48215727	412	-0.2515	NEUTRAL	NA	48	"ALS2CL,CCDC12,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDC25A,CDCP1,CLEC3B,CSPG5,CXCR6,DHX30,ELP6,EXOSC7,FYCO1,KIF15,KIF9,KLHL18,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MAP4,MYL3,NBEAL2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,PTPN23,RTP3,SACM1L,SCAP,SETD2,SLC6A20,SMARCC1,TDGF1,TGM4,TMEM158,TMEM42,TMIE,XCR1,ZDHHC3"
TCGA.AA.A00N.01A	3	44903351	44916084	4	-0.4428	NEUTRAL	NA	1	TMEM42
TCGA.A6.3808.01A	3	44903351	47030127	234	-0.0525	NEUTRAL	NA	36	"ALS2CL,CCDC12,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MYL3,NBEAL2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,RTP3,SACM1L,SLC6A20,TDGF1,TGM4,TMEM158,TMEM42,TMIE,XCR1,ZDHHC3"
TCGA.AA.A00D.01A	3	44905642	52443499	1044	-0.3326	NEUTRAL	NA	160	Too-Many
TCGA.AA.A00A.01A	3	44905642	197765401	6424	-0.4307	NEUTRAL	NA	817	Too-Many
TCGA.CK.5914.01A	3	44906480	45017702	21	0.3221	NEUTRAL	NA	3	"TGM4,TMEM42,ZDHHC3"
TCGA.AG.4009.01A	3	44916084	46726968	176	0.1279	NEUTRAL	NA	26	"ALS2CL,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,RTP3,SACM1L,SLC6A20,TDGF1,TGM4,TMEM158,XCR1,ZDHHC3"
TCGA.AG.A00C.01A	3	44916084	47286253	256	-0.0603	NEUTRAL	NA	37	"ALS2CL,CCDC12,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,KIF9,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MYL3,NBEAL2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,RTP3,SACM1L,SETD2,SLC6A20,TDGF1,TGM4,TMEM158,TMIE,XCR1,ZDHHC3"
TCGA.AA.A00L.01A	3	44916084	64084675	1784	-0.3522	NEUTRAL	NA	226	Too-Many
TCGA.AA.A010.01A	3	44926780	44935022	4	-0.3154	NEUTRAL	NA	1	TGM4
TCGA.AA.A00F.01A	3	44926780	46758880	187	0.1917	NEUTRAL	NA	28	"ALS2CL,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,PRSS50,RTP3,SACM1L,SLC6A20,TDGF1,TGM4,TMEM158,TMIE,XCR1,ZDHHC3"
TCGA.AG.3906.01A	3	44935022	46871850	186	-0.0894	NEUTRAL	NA	30	"ALS2CL,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,PRSS45,PRSS46,PRSS50,RTP3,SACM1L,SLC6A20,TDGF1,TGM4,TMEM158,TMIE,XCR1,ZDHHC3"
TCGA.AA.A00Q.01A	3	44968134	46940102	187	-0.5026	NEUTRAL	NA	32	"ALS2CL,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MYL3,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,RTP3,SACM1L,SLC6A20,TDGF1,TMEM158,TMIE,XCR1,ZDHHC3"
TCGA.CK.5914.01A	3	45048863	45755493	52	0.3042	NEUTRAL	NA	7	"CDCP1,CLEC3B,EXOSC7,LARS2,LIMD1,SACM1L,TMEM158"
TCGA.AA.A00N.01A	3	45744878	46730780	121	0.0103	NEUTRAL	NA	18	"ALS2CL,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CXCR6,FYCO1,LOC100132146,LRRC2,LTF,LZTFL1,RTP3,SACM1L,SLC6A20,TDGF1,XCR1"
TCGA.AG.3909.01A	3	45744878	47061193	170	-0.1772	NEUTRAL	NA	28	"ALS2CL,CCDC12,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CXCR6,FYCO1,LOC100132146,LRRC2,LTF,LZTFL1,MYL3,NBEAL2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,RTP3,SACM1L,SETD2,SLC6A20,TDGF1,TMIE,XCR1"
TCGA.CK.5914.01A	3	45760944	45764905	4	-0.415	NEUTRAL	NA	1	SACM1L
TCGA.CK.5914.01A	3	45800421	46786093	116	-0.1155	NEUTRAL	NA	21	"ALS2CL,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CXCR6,FYCO1,LOC100132146,LRRC2,LTF,LZTFL1,PRSS45,PRSS46,PRSS50,RTP3,SLC6A20,TDGF1,TMIE,XCR1"
TCGA.AA.A01Q.01A	3	46449650	46924986	63	-0.2646	NEUTRAL	NA	14	"ALS2CL,CCRL2,LOC100132146,LRRC2,LTF,MYL3,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,RTP3,TDGF1,TMIE"
TCGA.DM.A28A	3	46467802	197833757	42167	-0.0027	NEUTRAL	NA	796	Too-Many
TCGA.AA.A01C.01A	3	46495724	49152146	492	-0.155	NEUTRAL	NA	58	"ALS2CL,ARIH2,ARIH2OS,ATRIP,CAMP,CCDC12,CCDC51,CDC25A,CELSR3,COL7A1,CSPG5,DALRD3,DHX30,ELP6,FBXW12,IMPDH2,IP6K2,KIF9,KLHL18,LOC100132146,LRRC2,LTF,MAP4,MYL3,NBEAL2,NCKIPSD,NDUFAF3,NME6,P4HTM,PFKFB4,PLXNB1,PRKAR2A,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,PTPN23,QARS,QRICH1,RTP3,SCAP,SETD2,SHISA5,SLC25A20,SLC26A6,SMARCC1,SPINK8,TDGF1,TMA7,TMEM89,TMIE,TREX1,UCN2,UQCRC1,USP19,WDR6,ZNF589"
TCGA.AA.3695	3	46498915	46504905	10	-0.3921	NEUTRAL	NA	1	LTF
TCGA.AA.3695	3	46510208	197833757	42234	0.0127	NEUTRAL	NA	795	Too-Many
TCGA.AA.A01F.01A	3	46712427	46720638	10	0.1043	NEUTRAL	NA	1	ALS2CL
TCGA.AA.A01F.01A	3	46721901	47364010	79	-0.2839	NEUTRAL	NA	13	"ALS2CL,CCDC12,KIF9,KLHL18,MYL3,NBEAL2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,SETD2,TMIE"
TCGA.AF.3914.01A	3	46727756	47314993	104	-0.2769	NEUTRAL	NA	12	"ALS2CL,CCDC12,KIF9,MYL3,NBEAL2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,SETD2,TMIE"
TCGA.AA.A02K.01A	3	46756975	46904711	14	0.0255	NEUTRAL	NA	5	"MYL3,PRSS42,PRSS45,PRSS46,PRSS50"
TCGA.AG.4009.01A	3	46758880	47039914	32	-0.2302	NEUTRAL	NA	8	"CCDC12,MYL3,NBEAL2,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R"
TCGA.AG.3906.01A	3	46873329	46964740	18	0.3012	NEUTRAL	NA	4	"CCDC12,MYL3,PRSS42,PTH1R"
TCGA.CK.5914.01A	3	46874958	46944743	18	-0.3397	NEUTRAL	NA	3	"MYL3,PRSS42,PTH1R"
TCGA.AA.A010.01A	3	46899669	46982424	21	-0.2165	NEUTRAL	NA	3	"CCDC12,MYL3,PTH1R"
TCGA.AA.A00F.01A	3	46944743	46965029	4	-0.0271	NEUTRAL	NA	2	"CCDC12,PTH1R"
TCGA.AA.A01Q.01A	3	46963497	47018078	6	-0.4129	NEUTRAL	NA	1	CCDC12
TCGA.AG.3906.01A	3	46965029	47168059	42	-0.1385	NEUTRAL	NA	3	"CCDC12,NBEAL2,SETD2"
TCGA.AA.A00F.01A	3	46966887	48491416	202	0.3029	NEUTRAL	NA	22	"ATRIP,CAMP,CCDC12,CCDC51,CDC25A,CSPG5,DHX30,ELP6,FBXW12,KIF9,KLHL18,MAP4,NBEAL2,NME6,PLXNB1,PTPN23,SCAP,SETD2,SMARCC1,SPINK8,TMA7,ZNF589"
TCGA.EI.6514	3	47002930	122773370	20824	-0.0419	NEUTRAL	NA	379	Too-Many
TCGA.AG.A01W.01A	3	47010377	47024003	19	0.3519	NEUTRAL	NA	2	"CCDC12,NBEAL2"
TCGA.AA.A00N.01A	3	47018078	47039914	13	-0.3319	NEUTRAL	NA	2	"CCDC12,NBEAL2"
TCGA.CK.5914.01A	3	47018078	47061193	28	-0.4908	NEUTRAL	NA	3	"CCDC12,NBEAL2,SETD2"
TCGA.AG.A01W.01A	3	47025453	47425291	84	-0.1424	NEUTRAL	NA	5	"KIF9,KLHL18,NBEAL2,PTPN23,SETD2"
TCGA.AA.A01Q.01A	3	47030127	48445841	183	0.1084	NEUTRAL	NA	18	"CAMP,CDC25A,CSPG5,DHX30,ELP6,FBXW12,KIF9,KLHL18,MAP4,NBEAL2,NME6,PLXNB1,PTPN23,SCAP,SETD2,SMARCC1,SPINK8,ZNF589"
TCGA.AG.4009.01A	3	47050492	47277507	25	0.025	NEUTRAL	NA	3	"KIF9,NBEAL2,SETD2"
TCGA.AA.A02K.01A	3	47058534	48435988	219	-0.2172	NEUTRAL	NA	16	"CAMP,CDC25A,CSPG5,DHX30,ELP6,FBXW12,KIF9,KLHL18,MAP4,NME6,PTPN23,SCAP,SETD2,SMARCC1,SPINK8,ZNF589"
TCGA.CK.5914.01A	3	47079118	47281274	27	0.2127	NEUTRAL	NA	2	"KIF9,SETD2"
TCGA.AA.A010.01A	3	47079118	47316774	41	0.1033	NEUTRAL	NA	2	"KIF9,SETD2"
TCGA.AA.A00Q.01A	3	47084010	48675554	282	-0.3246	NEUTRAL	NA	29	"ATRIP,CAMP,CCDC51,CDC25A,CELSR3,COL7A1,CSPG5,DHX30,ELP6,FBXW12,KIF9,KLHL18,MAP4,NME6,PFKFB4,PLXNB1,PTPN23,SCAP,SETD2,SHISA5,SLC26A6,SMARCC1,SPINK8,TMA7,TMEM89,TREX1,UCN2,UQCRC1,ZNF589"
TCGA.AG.3906.01A	3	47270071	47318721	20	0.3379	NEUTRAL	NA	1	KIF9
TCGA.AG.4009.01A	3	47277891	47305719	11	-0.4069	NEUTRAL	NA	1	KIF9
TCGA.AA.A00N.01A	3	47281274	47289444	8	-0.1743	NEUTRAL	NA	1	KIF9
TCGA.AG.3909.01A	3	47282244	47469953	48	-0.2978	NEUTRAL	NA	4	"KIF9,KLHL18,PTPN23,SCAP"
TCGA.CK.5914.01A	3	47282244	47469953	50	-0.2063	NEUTRAL	NA	4	"KIF9,KLHL18,PTPN23,SCAP"
TCGA.AG.4009.01A	3	47307178	48209284	117	0.0567	NEUTRAL	NA	10	"CDC25A,CSPG5,DHX30,ELP6,KIF9,KLHL18,MAP4,PTPN23,SCAP,SMARCC1"
TCGA.AF.3914.01A	3	47316774	47604043	44	0.2629	NEUTRAL	NA	6	"CSPG5,ELP6,KIF9,KLHL18,PTPN23,SCAP"
TCGA.AG.3906.01A	3	47324429	47450239	18	-0.0295	NEUTRAL	NA	2	"KLHL18,PTPN23"
TCGA.AG.A00C.01A	3	47361104	47777480	68	-0.0457	NEUTRAL	NA	6	"CSPG5,ELP6,KLHL18,PTPN23,SCAP,SMARCC1"
TCGA.BM.6198	3	47372127	83364999	11658	-0.43335	NEUTRAL	NA	220	Too-Many
TCGA.AA.A01F.01A	3	47382032	47453243	13	-0.3045	NEUTRAL	NA	2	"KLHL18,PTPN23"
TCGA.AA.A00N.01A	3	47437574	47469953	24	-0.4178	NEUTRAL	NA	2	"PTPN23,SCAP"
TCGA.AA.A010.01A	3	47437574	47554955	33	0.2083	NEUTRAL	NA	3	"ELP6,PTPN23,SCAP"
TCGA.AG.A01W.01A	3	47441961	48277260	104	-0.1829	NEUTRAL	NA	9	"CAMP,CDC25A,CSPG5,DHX30,ELP6,MAP4,PTPN23,SCAP,SMARCC1"
TCGA.AA.A01F.01A	3	47453954	47465396	10	0.2019	NEUTRAL	NA	2	"PTPN23,SCAP"
TCGA.AA.A02E.01A	3	47460776	54880359	1219	-0.1829	NEUTRAL	NA	149	Too-Many
TCGA.A6.3808.01A	3	47463882	48448190	127	0.0518	NEUTRAL	NA	13	"CAMP,CDC25A,CSPG5,DHX30,ELP6,FBXW12,MAP4,NME6,PLXNB1,SCAP,SMARCC1,SPINK8,ZNF589"
TCGA.AG.3906.01A	3	47466938	47554955	14	-0.0667	NEUTRAL	NA	2	"ELP6,SCAP"
TCGA.AA.A01F.01A	3	47466938	53220236	1009	-0.215	NEUTRAL	NA	141	Too-Many
TCGA.AA.A029.01A	3	47469953	197765401	7030	-0.1998	NEUTRAL	NA	777	Too-Many
TCGA.CK.5914.01A	3	47476450	47702735	21	0.1993	NEUTRAL	NA	4	"CSPG5,ELP6,SCAP,SMARCC1"
TCGA.AA.A00N.01A	3	47476450	47787339	39	0.2231	NEUTRAL	NA	4	"CSPG5,ELP6,SCAP,SMARCC1"
TCGA.AF.3914.01A	3	47610549	48215727	70	-0.143	NEUTRAL	NA	5	"CDC25A,CSPG5,DHX30,MAP4,SMARCC1"
TCGA.AG.3906.01A	3	47651545	50036818	530	0.0634	NEUTRAL	NA	64	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,ATRIP,BSN,C3orf62,C3orf84,CAMKV,CAMP,CCDC36,CCDC51,CCDC71,CDC25A,CDHR4,CELSR3,COL7A1,DAG1,DALRD3,DHX30,FAM212A,FBXW12,GMPPB,GPX1,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,MAP4,MON1A,MST1,MST1R,NCKIPSD,NDUFAF3,NICN1,NME6,P4HTM,PFKFB4,PLXNB1,PRKAR2A,QARS,QRICH1,RBM6,RHOA,RNF123,SHISA5,SLC25A20,SLC26A6,SMARCC1,SPINK8,TCTA,TMA7,TMEM89,TRAIP,TREX1,UBA7,UCN2,UQCRC1,USP19,USP4,WDR6,ZNF589"
TCGA.AA.A010.01A	3	47663645	47680145	4	-0.4401	NEUTRAL	NA	1	SMARCC1
TCGA.AG.3909.01A	3	47663645	47814255	24	0.209	NEUTRAL	NA	1	SMARCC1
TCGA.AA.3509.01A	3	47676630	47868790	28	-0.1161	NEUTRAL	NA	2	"DHX30,SMARCC1"
TCGA.CK.5914.01A	3	47703794	47969669	51	-0.4255	NEUTRAL	NA	3	"DHX30,MAP4,SMARCC1"
TCGA.AG.A00C.01A	3	47779468	48348399	63	0.3664	NEUTRAL	NA	8	"CAMP,CDC25A,DHX30,MAP4,NME6,SMARCC1,SPINK8,ZNF589"
TCGA.AA.3862.01A	3	47779468	50369080	616	0.2532	NEUTRAL	NA	78	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,ATRIP,BSN,C3orf62,C3orf84,CAMKV,CAMP,CCDC36,CCDC51,CCDC71,CDC25A,CDHR4,CELSR3,COL7A1,DAG1,DALRD3,DHX30,FAM212A,FBXW12,GMPPB,GNAI2,GNAT1,GPX1,HYAL1,HYAL2,HYAL3,IFRD2,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,LSMEM2,MAP4,MON1A,MST1,MST1R,NAT6,NCKIPSD,NDUFAF3,NICN1,NME6,P4HTM,PFKFB4,PLXNB1,PRKAR2A,QARS,QRICH1,RASSF1,RBM5,RBM6,RHOA,RNF123,SEMA3B,SEMA3F,SHISA5,SLC25A20,SLC26A6,SLC38A3,SMARCC1,SPINK8,TCTA,TMA7,TMEM89,TRAIP,TREX1,TUSC2,UBA7,UCN2,UQCRC1,USP19,USP4,WDR6,ZNF589"
TCGA.AA.A010.01A	3	47852086	47884548	8	-0.3377	NEUTRAL	NA	1	DHX30
TCGA.AZ.4684.01A	3	47852086	58792085	1785	-0.0698	NEUTRAL	NA	172	Too-Many
TCGA.AA.A00N.01A	3	47882328	47969669	26	-0.4839	NEUTRAL	NA	2	"DHX30,MAP4"
TCGA.AA.A00O.01A	3	47894230	52802323	909	-0.2606	NEUTRAL	NA	127	Too-Many
TCGA.AA.A010.01A	3	47896701	47918857	8	0.1089	NEUTRAL	NA	1	MAP4
TCGA.AG.3909.01A	3	47950491	48282585	27	0.1119	NEUTRAL	NA	3	"CAMP,CDC25A,MAP4"
TCGA.AA.A02W.01A	3	47969669	50257261	498	-0.3479	NEUTRAL	NA	66	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,ATRIP,BSN,C3orf62,C3orf84,CAMKV,CAMP,CCDC36,CCDC51,CCDC71,CDC25A,CDHR4,CELSR3,COL7A1,DAG1,DALRD3,FAM212A,FBXW12,GMPPB,GNAT1,GPX1,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,MAP4,MON1A,MST1,MST1R,NCKIPSD,NDUFAF3,NICN1,NME6,P4HTM,PFKFB4,PLXNB1,PRKAR2A,QARS,QRICH1,RBM5,RBM6,RHOA,RNF123,SEMA3F,SHISA5,SLC25A20,SLC26A6,SLC38A3,SPINK8,TCTA,TMA7,TMEM89,TRAIP,TREX1,UBA7,UCN2,UQCRC1,USP19,USP4,WDR6,ZNF589"
TCGA.AA.A00N.01A	3	48016861	48215727	9	0.2743	NEUTRAL	NA	2	"CDC25A,MAP4"
TCGA.AA.3861.01A	3	48218799	50386767	572	0.2663	NEUTRAL	NA	77	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,ATRIP,BSN,C3orf62,C3orf84,CAMKV,CAMP,CCDC36,CCDC51,CCDC71,CDC25A,CDHR4,CELSR3,COL7A1,DAG1,DALRD3,FAM212A,FBXW12,GMPPB,GNAI2,GNAT1,GPX1,HYAL1,HYAL2,HYAL3,IFRD2,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,LSMEM2,MON1A,MST1,MST1R,NAT6,NCKIPSD,NDUFAF3,NICN1,NME6,NPRL2,P4HTM,PFKFB4,PLXNB1,PRKAR2A,QARS,QRICH1,RASSF1,RBM5,RBM6,RHOA,RNF123,SEMA3B,SEMA3F,SHISA5,SLC25A20,SLC26A6,SLC38A3,SPINK8,TCTA,TMA7,TMEM89,TRAIP,TREX1,TUSC2,UBA7,UCN2,UQCRC1,USP19,USP4,WDR6,ZMYND10,ZNF589"
TCGA.AF.3914.01A	3	48264955	48451670	32	0.0504	NEUTRAL	NA	6	"CAMP,FBXW12,NME6,PLXNB1,SPINK8,ZNF589"
TCGA.AA.A010.01A	3	48282585	48423163	24	0.2784	NEUTRAL	NA	4	"FBXW12,NME6,SPINK8,ZNF589"
TCGA.AG.4009.01A	3	48282585	48457718	34	-0.0082	NEUTRAL	NA	5	"FBXW12,NME6,PLXNB1,SPINK8,ZNF589"
TCGA.AG.3891.01A	3	48282585	48665801	142	0.1805	NEUTRAL	NA	16	"ATRIP,CCDC51,COL7A1,FBXW12,NME6,PFKFB4,PLXNB1,SHISA5,SLC26A6,SPINK8,TMA7,TMEM89,TREX1,UCN2,UQCRC1,ZNF589"
TCGA.AG.A01W.01A	3	48284392	48428246	30	0.1668	NEUTRAL	NA	4	"FBXW12,NME6,SPINK8,ZNF589"
TCGA.AA.3930.01A	3	48289062	48670697	148	-0.3723	NEUTRAL	NA	16	"ATRIP,CCDC51,COL7A1,FBXW12,NME6,PFKFB4,PLXNB1,SHISA5,SLC26A6,SPINK8,TMA7,TMEM89,TREX1,UCN2,UQCRC1,ZNF589"
TCGA.AG.3909.01A	3	48342695	48460999	30	0.0311	NEUTRAL	NA	4	"FBXW12,NME6,PLXNB1,SPINK8"
TCGA.AA.A00N.01A	3	48360939	48369729	3	-0.2676	NEUTRAL	NA	1	SPINK8
TCGA.AG.A00C.01A	3	48360939	48460999	27	-0.1767	NEUTRAL	NA	3	"FBXW12,PLXNB1,SPINK8"
TCGA.CK.5914.01A	3	48362451	48448190	15	0.2908	NEUTRAL	NA	3	"FBXW12,PLXNB1,SPINK8"
TCGA.AG.A01W.01A	3	48428589	48575267	54	-0.1805	NEUTRAL	NA	8	"ATRIP,CCDC51,FBXW12,PFKFB4,PLXNB1,SHISA5,TMA7,TREX1"
TCGA.AA.A010.01A	3	48435995	48462600	21	-0.5049	NEUTRAL	NA	2	"FBXW12,PLXNB1"
TCGA.AA.A00N.01A	3	48435995	48481645	29	-0.289	NEUTRAL	NA	3	"CCDC51,FBXW12,PLXNB1"
TCGA.AA.A01Q.01A	3	48447072	48594061	57	-0.4792	NEUTRAL	NA	7	"ATRIP,CCDC51,PFKFB4,PLXNB1,SHISA5,TMA7,TREX1"
TCGA.CK.5914.01A	3	48450687	48481645	25	-0.3753	NEUTRAL	NA	2	"CCDC51,PLXNB1"
TCGA.AA.A02K.01A	3	48463054	48663337	92	-0.3287	NEUTRAL	NA	12	"ATRIP,CCDC51,COL7A1,PFKFB4,PLXNB1,SHISA5,SLC26A6,TMA7,TMEM89,TREX1,UCN2,UQCRC1"
TCGA.AF.3914.01A	3	48488208	48562946	24	-0.414	NEUTRAL	NA	4	"ATRIP,PFKFB4,SHISA5,TREX1"
TCGA.AG.3909.01A	3	48501175	48625678	57	0.1127	NEUTRAL	NA	6	"ATRIP,COL7A1,PFKFB4,SHISA5,TREX1,UCN2"
TCGA.AA.A00N.01A	3	48501175	48636515	71	0.0349	NEUTRAL	NA	7	"ATRIP,COL7A1,PFKFB4,SHISA5,TREX1,UCN2,UQCRC1"
TCGA.CK.5914.01A	3	48501497	48557143	14	-0.4989	NEUTRAL	NA	4	"ATRIP,PFKFB4,SHISA5,TREX1"
TCGA.AA.A010.01A	3	48505092	48538563	12	-0.2743	NEUTRAL	NA	3	"ATRIP,SHISA5,TREX1"
TCGA.AA.A00F.01A	3	48505092	50103657	383	0.3111	NEUTRAL	NA	52	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,ATRIP,BSN,C3orf62,C3orf84,CAMKV,CCDC36,CCDC71,CDHR4,CELSR3,COL7A1,DAG1,DALRD3,FAM212A,GMPPB,GPX1,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,MON1A,MST1,MST1R,NCKIPSD,NDUFAF3,NICN1,P4HTM,PFKFB4,PRKAR2A,QARS,QRICH1,RBM6,RHOA,RNF123,SHISA5,SLC25A20,SLC26A6,TCTA,TMEM89,TRAIP,TREX1,UBA7,UCN2,UQCRC1,USP19,USP4,WDR6"
TCGA.AG.A00C.01A	3	48509003	48625678	48	-0.0199	NEUTRAL	NA	5	"COL7A1,PFKFB4,SHISA5,TREX1,UCN2"
TCGA.AA.A010.01A	3	48541390	48658868	70	0.2486	NEUTRAL	NA	6	"COL7A1,PFKFB4,SHISA5,TMEM89,UCN2,UQCRC1"
TCGA.CK.5914.01A	3	48559353	48600231	12	0.1674	NEUTRAL	NA	2	"PFKFB4,UCN2"
TCGA.AF.3914.01A	3	48572898	50225109	446	-0.065	NEUTRAL	NA	51	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,BSN,C3orf62,C3orf84,CAMKV,CCDC36,CCDC71,CDHR4,CELSR3,COL7A1,DAG1,DALRD3,FAM212A,GMPPB,GPX1,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,MON1A,MST1,MST1R,NCKIPSD,NDUFAF3,NICN1,P4HTM,PFKFB4,PRKAR2A,QARS,QRICH1,RBM5,RBM6,RHOA,RNF123,SEMA3F,SLC25A20,SLC26A6,TCTA,TMEM89,TRAIP,UBA7,UCN2,UQCRC1,USP19,USP4,WDR6"
TCGA.AG.A01W.01A	3	48597945	48655133	42	-0.1961	NEUTRAL	NA	3	"COL7A1,UCN2,UQCRC1"
TCGA.AA.A01Q.01A	3	48600231	48611646	14	-0.0212	NEUTRAL	NA	2	"COL7A1,UCN2"
TCGA.AA.3967.01A	3	48625207	50219670	404	0.0094	NEUTRAL	NA	49	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,BSN,C3orf62,C3orf84,CAMKV,CCDC36,CCDC71,CDHR4,CELSR3,COL7A1,DAG1,DALRD3,FAM212A,GMPPB,GPX1,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,MON1A,MST1,MST1R,NCKIPSD,NDUFAF3,NICN1,P4HTM,PRKAR2A,QARS,QRICH1,RBM5,RBM6,RHOA,RNF123,SEMA3F,SLC25A20,SLC26A6,TCTA,TMEM89,TRAIP,UBA7,UQCRC1,USP19,USP4,WDR6"
TCGA.AG.A00C.01A	3	48626024	48670697	32	0.3586	NEUTRAL	NA	4	"COL7A1,SLC26A6,TMEM89,UQCRC1"
TCGA.AG.A016.01A	3	48646544	48677055	16	-0.3766	NEUTRAL	NA	4	"CELSR3,SLC26A6,TMEM89,UQCRC1"
TCGA.AG.3909.01A	3	48646544	48732476	45	-0.3014	NEUTRAL	NA	6	"CELSR3,IP6K2,NCKIPSD,SLC26A6,TMEM89,UQCRC1"
TCGA.AA.A02K.01A	3	48663611	48687862	26	0.0153	NEUTRAL	NA	2	"CELSR3,SLC26A6"
TCGA.AG.4009.01A	3	48667033	48680169	9	0.0566	NEUTRAL	NA	2	"CELSR3,SLC26A6"
TCGA.AG.3891.01A	3	48667033	48693147	26	-0.2369	NEUTRAL	NA	2	"CELSR3,SLC26A6"
TCGA.AG.3605.01A	3	48667871	50311747	32	0.3716	NEUTRAL	NA	50	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,BSN,C3orf62,C3orf84,CAMKV,CCDC36,CCDC71,CDHR4,CELSR3,DAG1,DALRD3,FAM212A,GMPPB,GNAI2,GNAT1,GPX1,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,MON1A,MST1,MST1R,NCKIPSD,NDUFAF3,NICN1,P4HTM,PRKAR2A,QARS,QRICH1,RBM5,RBM6,RHOA,RNF123,SEMA3B,SEMA3F,SLC25A20,SLC26A6,SLC38A3,TCTA,TRAIP,UBA7,USP19,USP4,WDR6"
TCGA.AA.A00Q.01A	3	48677055	48688276	13	0.3363	NEUTRAL	NA	1	CELSR3
TCGA.AG.A016.01A	3	48686165	130354498	3809	-0.0658	NEUTRAL	NA	415	Too-Many
TCGA.AG.A01W.01A	3	48686935	48992749	44	-0.2977	NEUTRAL	NA	7	"ARIH2,ARIH2OS,CELSR3,IP6K2,NCKIPSD,PRKAR2A,SLC25A20"
TCGA.AA.A00Q.01A	3	48688753	51431104	439	-0.3217	NEUTRAL	NA	69	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,BSN,C3orf18,C3orf62,C3orf84,CACNA2D2,CAMKV,CCDC36,CCDC71,CDHR4,CELSR3,CISH,CYB561D2,DAG1,DALRD3,DOCK3,FAM212A,GMPPB,GNAI2,GNAT1,GPX1,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,LSMEM2,MANF,MAPKAPK3,MON1A,MST1,MST1R,NAT6,NCKIPSD,NDUFAF3,NICN1,NPRL2,P4HTM,PRKAR2A,QARS,QRICH1,RASSF1,RBM15B,RBM5,RBM6,RHOA,RNF123,SEMA3B,SEMA3F,SLC25A20,SLC38A3,TCTA,TMEM115,TRAIP,TUSC2,UBA7,USP19,USP4,WDR6,ZMYND10"
TCGA.AA.A02K.01A	3	48688754	51418451	528	-0.265	NEUTRAL	NA	67	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,BSN,C3orf18,C3orf62,C3orf84,CACNA2D2,CAMKV,CCDC36,CCDC71,CDHR4,CELSR3,CISH,CYB561D2,DAG1,DALRD3,DOCK3,FAM212A,GMPPB,GNAI2,GNAT1,GPX1,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,IMPDH2,IP6K1,IP6K2,KLHDC8B,LAMB2,LSMEM2,MAPKAPK3,MON1A,MST1,MST1R,NAT6,NCKIPSD,NDUFAF3,NICN1,NPRL2,P4HTM,PRKAR2A,QARS,QRICH1,RASSF1,RBM5,RBM6,RHOA,RNF123,SEMA3B,SEMA3F,SLC25A20,SLC38A3,TCTA,TMEM115,TRAIP,TUSC2,UBA7,USP19,USP4,WDR6,ZMYND10"
TCGA.AG.A00C.01A	3	48689313	51982280	570	0.1632	NEUTRAL	NA	80	"AMIGO3,AMT,APEH,ARIH2,ARIH2OS,BSN,C3orf18,C3orf62,C3orf84,CACNA2D2,CAMKV,CCDC36,CCDC71,CDHR4,CELSR3,CISH,CYB561D2,DAG1,DALRD3,DOCK3,FAM212A,GMPPB,GNAI2,GNAT1,GPX1,GRM2,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,IMPDH2,IP6K1,IP6K2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,KLHDC8B,LAMB2,LSMEM2,MANF,MAPKAPK3,MON1A,MST1,MST1R,NAT6,NCKIPSD,NDUFAF3,NICN1,NPRL2,P4HTM,PARP3,PRKAR2A,QARS,QRICH1,RAD54L2,RASSF1,RBM15B,RBM5,RBM6,RHOA,RNF123,RRP9,SEMA3B,SEMA3F,SLC25A20,SLC38A3,TCTA,TEX264,TMEM115,TRAIP,TUSC2,UBA7,USP19,USP4,VPRBP,WDR6,ZMYND10"
TCGA.AA.A01Q.01A	3	48689822	48730337	21	-0.3408	NEUTRAL	NA	3	"CELSR3,IP6K2,NCKIPSD"
TCGA.AA.3930.01A	3	48691695	49215845	136	-0.4064	NEUTRAL	NA	19	"ARIH2,ARIH2OS,C3orf84,CCDC71,CELSR3,DALRD3,IMPDH2,IP6K2,KLHDC8B,LAMB2,NCKIPSD,NDUFAF3,P4HTM,PRKAR2A,QARS,QRICH1,SLC25A20,USP19,WDR6"
TCGA.AG.3891.01A	3	48694109	49697867	186	0.3745	NEUTRAL	NA	29	"AMT,ARIH2,ARIH2OS,BSN,C3orf62,C3orf84,CCDC36,CCDC71,CELSR3,DAG1,DALRD3,GPX1,IMPDH2,IP6K2,KLHDC8B,LAMB2,NCKIPSD,NDUFAF3,NICN1,P4HTM,PRKAR2A,QARS,QRICH1,RHOA,SLC25A20,TCTA,USP19,USP4,WDR6"
TCGA.AG.4009.01A	3	48717512	48789592	11	-0.2094	NEUTRAL	NA	3	"IP6K2,NCKIPSD,PRKAR2A"
TCGA.AA.3509.01A	3	48726989	57447186	1351	-0.1022	NEUTRAL	NA	135	Too-Many
TCGA.AA.A01Q.01A	3	48731526	49007976	28	0.1112	NEUTRAL	NA	5	"ARIH2,ARIH2OS,IP6K2,PRKAR2A,SLC25A20"
TCGA.AA.A00N.01A	3	48731526	49059807	57	-0.4446	NEUTRAL	NA	9	"ARIH2,ARIH2OS,DALRD3,IP6K2,NDUFAF3,P4HTM,PRKAR2A,SLC25A20,WDR6"
TCGA.CK.5914.01A	3	48732476	49007976	28	0.0132	NEUTRAL	NA	5	"ARIH2,ARIH2OS,IP6K2,PRKAR2A,SLC25A20"
TCGA.AY.6196	3	48787218	78019657	10233	-0.1409	NEUTRAL	NA	189	Too-Many
TCGA.AG.3909.01A	3	48788968	49016873	30	0.28	NEUTRAL	NA	4	"ARIH2,ARIH2OS,PRKAR2A,SLC25A20"
TCGA.AG.4009.01A	3	48793747	48999037	20	0.1964	NEUTRAL	NA	4	"ARIH2,ARIH2OS,PRKAR2A,SLC25A20"
TCGA.AG.3611.01A	3	48964945	58196456	1045	0.1177	NEUTRAL	NA	137	Too-Many
TCGA.AG.A01W.01A	3	48994042	49041150	25	0.1435	NEUTRAL	NA	2	"ARIH2,P4HTM"
TCGA.AG.4009.01A	3	49002282	49049019	19	-0.3679	NEUTRAL	NA	3	"ARIH2,P4HTM,WDR6"
TCGA.CK.5914.01A	3	49011095	49059807	27	-0.4362	NEUTRAL	NA	5	"ARIH2,DALRD3,NDUFAF3,P4HTM,WDR6"
TCGA.AA.A01Q.01A	3	49011095	49688979	138	-0.3168	NEUTRAL	NA	23	"AMT,ARIH2,BSN,C3orf62,C3orf84,CCDC36,CCDC71,DAG1,DALRD3,GPX1,IMPDH2,KLHDC8B,LAMB2,NDUFAF3,NICN1,P4HTM,QARS,QRICH1,RHOA,TCTA,USP19,USP4,WDR6"
TCGA.AG.3909.01A	3	49017756	49038820	7	-0.2698	NEUTRAL	NA	2	"ARIH2,P4HTM"
TCGA.AG.A01W.01A	3	49041653	49144489	40	-0.1518	NEUTRAL	NA	7	"DALRD3,IMPDH2,NDUFAF3,P4HTM,QARS,QRICH1,WDR6"
TCGA.AA.A010.01A	3	49043450	49169484	68	-0.2238	NEUTRAL	NA	9	"DALRD3,IMPDH2,LAMB2,NDUFAF3,P4HTM,QARS,QRICH1,USP19,WDR6"
TCGA.AG.4009.01A	3	49051046	49114120	22	0.0267	NEUTRAL	NA	5	"DALRD3,IMPDH2,NDUFAF3,QRICH1,WDR6"
TCGA.AA.A01C.01A	3	49156416	58414162	1187	-0.0902	NEUTRAL	NA	133	Too-Many
TCGA.AG.3909.01A	3	49161593	49169484	11	0.0107	NEUTRAL	NA	1	LAMB2
TCGA.AG.4009.01A	3	49163128	49215845	18	-0.2099	NEUTRAL	NA	4	"C3orf84,CCDC71,KLHDC8B,LAMB2"
TCGA.CK.5914.01A	3	49165854	49849863	158	-0.3817	NEUTRAL	NA	23	"AMIGO3,AMT,APEH,BSN,C3orf62,C3orf84,CCDC36,CCDC71,CDHR4,DAG1,FAM212A,GMPPB,GPX1,IP6K1,KLHDC8B,LAMB2,MST1,NICN1,RHOA,RNF123,TCTA,UBA7,USP4"
TCGA.AG.A015.01A	3	49166990	49215845	14	0.355	NEUTRAL	NA	4	"C3orf84,CCDC71,KLHDC8B,LAMB2"
TCGA.AA.A010.01A	3	49200206	49282043	14	0.073	NEUTRAL	NA	4	"C3orf84,CCDC36,CCDC71,KLHDC8B"
TCGA.AG.A01W.01A	3	49202253	49352324	34	-0.4023	NEUTRAL	NA	6	"C3orf62,C3orf84,CCDC36,CCDC71,KLHDC8B,USP4"
TCGA.AA.3930.01A	3	49227265	49412826	38	-0.0511	NEUTRAL	NA	6	"C3orf62,C3orf84,CCDC36,GPX1,RHOA,USP4"
TCGA.AG.4009.01A	3	49227265	49412826	37	0.3728	NEUTRAL	NA	6	"C3orf62,C3orf84,CCDC36,GPX1,RHOA,USP4"
TCGA.AG.3909.01A	3	49273932	49689515	57	0.0816	NEUTRAL	NA	10	"AMT,BSN,C3orf62,CCDC36,DAG1,GPX1,NICN1,RHOA,TCTA,USP4"
TCGA.AG.A015.01A	3	49292791	49688979	52	-0.1784	NEUTRAL	NA	10	"AMT,BSN,C3orf62,CCDC36,DAG1,GPX1,NICN1,RHOA,TCTA,USP4"
TCGA.AG.A01W.01A	3	49369908	49433889	14	0.248	NEUTRAL	NA	3	"GPX1,RHOA,USP4"
TCGA.AA.A010.01A	3	49397600	49449838	5	0.2232	NEUTRAL	NA	2	"RHOA,TCTA"
TCGA.AA.3982	3	49410263	49936607	44	0.2525	NEUTRAL	NA	18	"AMIGO3,AMT,APEH,BSN,CAMKV,CDHR4,DAG1,FAM212A,GMPPB,IP6K1,MST1,MST1R,NICN1,RHOA,RNF123,TCTA,TRAIP,UBA7"
TCGA.AG.A01W.01A	3	49434601	49666229	17	-0.3268	NEUTRAL	NA	6	"AMT,BSN,DAG1,NICN1,RHOA,TCTA"
TCGA.AG.3598	3	49443080	50138421	60	0.2214	NEUTRAL	NA	21	"AMIGO3,AMT,APEH,BSN,CAMKV,CDHR4,DAG1,FAM212A,GMPPB,IP6K1,MON1A,MST1,MST1R,NICN1,RBM5,RBM6,RHOA,RNF123,TCTA,TRAIP,UBA7"
TCGA.AG.4009.01A	3	49449838	49462200	11	-0.4882	NEUTRAL	NA	3	"AMT,NICN1,TCTA"
TCGA.AA.3930.01A	3	49458869	49463677	6	0.1545	NEUTRAL	NA	2	"AMT,NICN1"
TCGA.AG.4009.01A	3	49462754	49750906	52	0.1579	NEUTRAL	NA	6	"APEH,BSN,DAG1,MST1,NICN1,RNF123"
TCGA.AA.3930.01A	3	49466503	49701183	13	-0.4629	NEUTRAL	NA	3	"BSN,DAG1,NICN1"
TCGA.AA.A010.01A	3	49466503	49829142	66	-0.0685	NEUTRAL	NA	10	"AMIGO3,APEH,BSN,CDHR4,DAG1,GMPPB,IP6K1,MST1,NICN1,RNF123"
TCGA.EI.6509	3	49557050	117869380	19283	0.0302	NEUTRAL	NA	275	Too-Many
TCGA.AG.A01W.01A	3	49667161	49711857	28	0.328	NEUTRAL	NA	2	"APEH,BSN"
TCGA.AG.A015.01A	3	49689515	49738876	28	0.2422	NEUTRAL	NA	4	"APEH,BSN,MST1,RNF123"
TCGA.AG.3891.01A	3	49699101	49736165	27	-0.1358	NEUTRAL	NA	4	"APEH,BSN,MST1,RNF123"
TCGA.AG.A01W.01A	3	49712614	49725890	12	-0.433	NEUTRAL	NA	2	"APEH,MST1"
TCGA.A6.3808.01A	3	49734549	49836208	43	-0.3713	NEUTRAL	NA	5	"AMIGO3,CDHR4,GMPPB,IP6K1,RNF123"
TCGA.AG.3891.01A	3	49736852	49950605	81	0.1903	NEUTRAL	NA	11	"AMIGO3,CAMKV,CDHR4,FAM212A,GMPPB,IP6K1,MON1A,MST1R,RNF123,TRAIP,UBA7"
TCGA.AA.3930.01A	3	49736852	62385031	1345	-0.4383	NEUTRAL	NA	126	Too-Many
TCGA.AG.A015.01A	3	49739204	49744187	8	-0.3619	NEUTRAL	NA	1	RNF123
TCGA.AG.A01W.01A	3	49745200	49902354	54	-0.0284	NEUTRAL	NA	9	"AMIGO3,CAMKV,CDHR4,FAM212A,GMPPB,IP6K1,RNF123,TRAIP,UBA7"
TCGA.AG.4009.01A	3	49752957	49849256	26	-0.1334	NEUTRAL	NA	7	"AMIGO3,CDHR4,FAM212A,GMPPB,IP6K1,RNF123,UBA7"
TCGA.AG.A015.01A	3	49757927	49946408	58	-0.1121	NEUTRAL	NA	10	"CAMKV,CDHR4,FAM212A,GMPPB,IP6K1,MON1A,MST1R,RNF123,TRAIP,UBA7"
TCGA.AG.3909.01A	3	49765488	49848714	17	0.0349	NEUTRAL	NA	4	"CDHR4,FAM212A,IP6K1,UBA7"
TCGA.AA.A010.01A	3	49829860	50098877	78	0.2192	NEUTRAL	NA	8	"CAMKV,CDHR4,FAM212A,MON1A,MST1R,RBM6,TRAIP,UBA7"
TCGA.AA.A01Q.01A	3	49840758	49950605	54	-0.3473	NEUTRAL	NA	6	"CAMKV,FAM212A,MON1A,MST1R,TRAIP,UBA7"
TCGA.AG.4009.01A	3	49849863	49893737	16	0.2698	NEUTRAL	NA	2	"TRAIP,UBA7"
TCGA.AA.A00N.01A	3	49850468	49896771	16	0.1365	NEUTRAL	NA	3	"CAMKV,TRAIP,UBA7"
TCGA.AG.4009.01A	3	49896771	49947513	24	-0.2005	NEUTRAL	NA	3	"CAMKV,MON1A,MST1R"
TCGA.AG.3909.01A	3	49897570	49933943	15	0.0476	NEUTRAL	NA	2	"CAMKV,MST1R"
TCGA.AA.A00N.01A	3	49897570	50103657	41	-0.4018	NEUTRAL	NA	4	"CAMKV,MON1A,MST1R,RBM6"
TCGA.AG.A01W.01A	3	49908948	49942005	13	0.096	NEUTRAL	NA	1	MST1R
TCGA.AG.3909.01A	3	49934664	49999997	11	-0.4721	NEUTRAL	NA	3	"MON1A,MST1R,RBM6"
TCGA.AA.3982	3	49938757	58985077	2425	-0.143	NEUTRAL	NA	112	Too-Many
TCGA.A6.3808.01A	3	49940583	50144857	36	-0.2216	NEUTRAL	NA	4	"MON1A,MST1R,RBM5,RBM6"
TCGA.AG.A015.01A	3	49947513	50152829	40	-0.3905	NEUTRAL	NA	3	"MON1A,RBM5,RBM6"
TCGA.AG.4009.01A	3	49948942	50099354	15	0.1976	NEUTRAL	NA	2	"MON1A,RBM6"
TCGA.AG.A01W.01A	3	49975033	50119152	31	-0.3417	NEUTRAL	NA	1	RBM6
TCGA.CK.5914.01A	3	49999997	50103657	15	0.0213	NEUTRAL	NA	1	RBM6
TCGA.AA.A01Q.01A	3	49999997	50107839	17	0.2356	NEUTRAL	NA	1	RBM6
TCGA.AG.3909.01A	3	50004864	50012694	3	0.0493	NEUTRAL	NA	1	RBM6
TCGA.AA.A01Q.01A	3	50112605	50155717	23	-0.3155	NEUTRAL	NA	2	"RBM5,RBM6"
TCGA.DM.A28H	3	50113033	59788676	2796	-0.0153	NEUTRAL	NA	111	Too-Many
TCGA.AG.3909.01A	3	50114399	50421600	106	-0.4691	NEUTRAL	NA	20	"CACNA2D2,CYB561D2,GNAI2,GNAT1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,NAT6,NPRL2,RASSF1,RBM5,RBM6,SEMA3B,SEMA3F,SLC38A3,TMEM115,TUSC2,ZMYND10"
TCGA.AG.A01W.01A	3	50126337	51398648	176	0.0674	NEUTRAL	NA	24	"C3orf18,CACNA2D2,CISH,CYB561D2,DOCK3,GNAI2,GNAT1,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,MAPKAPK3,NAT6,NPRL2,RASSF1,RBM5,SEMA3B,SEMA3F,SLC38A3,TMEM115,TUSC2,ZMYND10"
TCGA.AG.A015.01A	3	50153290	50290444	27	0.0936	NEUTRAL	NA	5	"GNAI2,GNAT1,RBM5,SEMA3F,SLC38A3"
TCGA.AG.3598	3	50153355	50670077	71	-0.2417	NEUTRAL	NA	23	"C3orf18,CACNA2D2,CISH,CYB561D2,GNAI2,GNAT1,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,MAPKAPK3,NAT6,NPRL2,RASSF1,RBM5,SEMA3B,SEMA3F,SLC38A3,TMEM115,TUSC2,ZMYND10"
TCGA.AG.3891.01A	3	50155717	51977330	239	0.0577	NEUTRAL	NA	37	"C3orf18,CACNA2D2,CISH,CYB561D2,DOCK3,GNAI2,GNAT1,GRM2,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,LSMEM2,MANF,MAPKAPK3,NAT6,NPRL2,PARP3,RAD54L2,RASSF1,RBM15B,RBM5,RRP9,SEMA3B,SEMA3F,SLC38A3,TEX264,TMEM115,TUSC2,VPRBP,ZMYND10"
TCGA.AG.A008.01A	3	50155717	93845008	1581	0.1116	NEUTRAL	NA	165	Too-Many
TCGA.AG.3906.01A	3	50197005	50232201	17	-0.0277	NEUTRAL	NA	2	"GNAT1,SEMA3F"
TCGA.AA.A00F.01A	3	50197005	63981154	911	0.2564	NEUTRAL	NA	117	Too-Many
TCGA.AA.3967.01A	3	50220030	50312223	34	-0.3973	NEUTRAL	NA	5	"GNAI2,GNAT1,SEMA3B,SEMA3F,SLC38A3"
TCGA.AA.A010.01A	3	50223330	50231488	7	-0.3856	NEUTRAL	NA	2	"GNAT1,SEMA3F"
TCGA.AA.A004.01A	3	50230501	197765401	6454	-0.494	NEUTRAL	NA	708	Too-Many
TCGA.AF.3914.01A	3	50257261	50339460	28	-0.283	NEUTRAL	NA	8	"GNAI2,HYAL1,HYAL3,IFRD2,LSMEM2,NAT6,SEMA3B,SLC38A3"
TCGA.AA.A02W.01A	3	50290444	52434330	308	-0.0329	NEUTRAL	NA	48	"ABHD14A,ABHD14B,ACY1,ALAS1,C3orf18,CACNA2D2,CISH,CYB561D2,DNAH1,DOCK3,DUSP7,GLYCTK,GNAI2,GPR62,GRM2,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,LSMEM2,MANF,MAPKAPK3,NAT6,NPRL2,PARP3,PCBP4,POC1A,PPM1M,RAD54L2,RASSF1,RBM15B,RPL29,RRP9,SEMA3B,TEX264,TLR9,TMEM115,TUSC2,TWF2,VPRBP,WDR82,ZMYND10"
TCGA.AG.3906.01A	3	50294885	50332118	16	0.1291	NEUTRAL	NA	5	"GNAI2,HYAL3,IFRD2,LSMEM2,SEMA3B"
TCGA.AG.A015.01A	3	50294885	50369429	24	0.0517	NEUTRAL	NA	10	"GNAI2,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,NAT6,RASSF1,SEMA3B,TUSC2"
TCGA.AA.A010.01A	3	50306632	50329601	16	-0.1679	NEUTRAL	NA	3	"IFRD2,LSMEM2,SEMA3B"
TCGA.AA.3967.01A	3	50312684	51126593	83	-0.0354	NEUTRAL	NA	19	"C3orf18,CACNA2D2,CISH,CYB561D2,DOCK3,HEMK1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,MAPKAPK3,NAT6,NPRL2,RASSF1,SEMA3B,TMEM115,TUSC2,ZMYND10"
TCGA.AA.3862.01A	3	50369429	51423607	111	-0.3694	NEUTRAL	NA	12	"C3orf18,CACNA2D2,CISH,CYB561D2,DOCK3,HEMK1,MANF,MAPKAPK3,NPRL2,RASSF1,TMEM115,ZMYND10"
TCGA.AF.3914.01A	3	50369429	51425118	109	0.1004	NEUTRAL	NA	12	"C3orf18,CACNA2D2,CISH,CYB561D2,DOCK3,HEMK1,MANF,MAPKAPK3,NPRL2,RASSF1,TMEM115,ZMYND10"
TCGA.AG.3906.01A	3	50374567	50405521	19	0.023	NEUTRAL	NA	6	"CACNA2D2,CYB561D2,NPRL2,RASSF1,TMEM115,ZMYND10"
TCGA.AG.A015.01A	3	50374567	50418397	22	-0.4063	NEUTRAL	NA	6	"CACNA2D2,CYB561D2,NPRL2,RASSF1,TMEM115,ZMYND10"
TCGA.AA.A01Q.01A	3	50379800	50418397	29	0.1503	NEUTRAL	NA	5	"CACNA2D2,CYB561D2,NPRL2,TMEM115,ZMYND10"
TCGA.AA.3861.01A	3	50388818	51297536	71	-0.4553	NEUTRAL	NA	8	"C3orf18,CACNA2D2,CISH,CYB561D2,DOCK3,HEMK1,MAPKAPK3,TMEM115"
TCGA.AG.4009.01A	3	50392722	50416854	12	-0.2333	NEUTRAL	NA	2	"CACNA2D2,TMEM115"
TCGA.AA.A010.01A	3	50392722	51246152	63	0.0268	NEUTRAL	NA	7	"C3orf18,CACNA2D2,CISH,DOCK3,HEMK1,MAPKAPK3,TMEM115"
TCGA.AA.A00J.01A	3	50402070	183858194	4731	-0.0131	NEUTRAL	NA	586	Too-Many
TCGA.AG.3906.01A	3	50418110	51979826	157	0.0176	NEUTRAL	NA	19	"C3orf18,CACNA2D2,CISH,DOCK3,GRM2,HEMK1,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,MANF,MAPKAPK3,PARP3,RAD54L2,RBM15B,RRP9,TEX264,VPRBP"
TCGA.AG.4009.01A	3	50418397	50677747	22	0.2691	NEUTRAL	NA	5	"C3orf18,CACNA2D2,CISH,HEMK1,MAPKAPK3"
TCGA.AG.A015.01A	3	50421600	51689935	115	-0.076	NEUTRAL	NA	10	"C3orf18,CACNA2D2,CISH,DOCK3,HEMK1,MANF,MAPKAPK3,RAD54L2,RBM15B,VPRBP"
TCGA.A6.3808.01A	3	50421600	51977330	164	-0.1839	NEUTRAL	NA	19	"C3orf18,CACNA2D2,CISH,DOCK3,GRM2,HEMK1,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,MANF,MAPKAPK3,PARP3,RAD54L2,RBM15B,RRP9,TEX264,VPRBP"
TCGA.CK.5914.01A	3	50431492	51317497	56	0.0536	NEUTRAL	NA	6	"C3orf18,CACNA2D2,CISH,DOCK3,HEMK1,MAPKAPK3"
TCGA.AA.A00N.01A	3	50471716	51317497	56	0.0511	NEUTRAL	NA	6	"C3orf18,CACNA2D2,CISH,DOCK3,HEMK1,MAPKAPK3"
TCGA.AA.A01Q.01A	3	50617729	51434791	26	-0.1978	NEUTRAL	NA	7	"CISH,DOCK3,HEMK1,MANF,MAPKAPK3,RBM15B,VPRBP"
TCGA.AG.4009.01A	3	50679074	51264663	21	-0.0438	NEUTRAL	NA	2	"DOCK3,MAPKAPK3"
TCGA.AG.3909.01A	3	50816059	51317497	25	0.1367	NEUTRAL	NA	1	DOCK3
TCGA.AA.3941	3	50862212	51248197	30	0.0459	NEUTRAL	NA	1	DOCK3
TCGA.AA.3967.01A	3	51127614	51928884	108	-0.404	NEUTRAL	NA	11	"DOCK3,GRM2,IQCF2,IQCF3,IQCF5,IQCF6,MANF,RAD54L2,RBM15B,TEX264,VPRBP"
TCGA.AG.4009.01A	3	51265371	51308217	8	-0.4655	NEUTRAL	NA	1	DOCK3
TCGA.AA.3861.01A	3	51308217	53220236	513	0.1362	NEUTRAL	NA	51	"ABHD14A,ABHD14B,ACY1,ALAS1,BAP1,DNAH1,DOCK3,DUSP7,GLT8D1,GLYCTK,GNL3,GPR62,GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,ITIH1,ITIH3,ITIH4,MANF,MUSTN1,NEK4,NISCH,NT5DC2,PARP3,PBRM1,PCBP4,PHF7,POC1A,PPM1M,PRKCD,RAD54L2,RBM15B,RFT1,RPL29,RRP9,SEMA3G,SFMBT1,SMIM4,SPCS1,STAB1,TEX264,TLR9,TMEM110,TMEM110-MUSTN1,TNNC1,TWF2,VPRBP,WDR82"
TCGA.AG.4009.01A	3	51312458	51418504	25	-0.0102	NEUTRAL	NA	1	DOCK3
TCGA.AA.A010.01A	3	51317497	51386228	12	0.243	NEUTRAL	NA	1	DOCK3
TCGA.CK.5914.01A	3	51367515	51376311	4	0.2437	NEUTRAL	NA	1	DOCK3
TCGA.AA.A00N.01A	3	51367515	51422763	19	0.2067	NEUTRAL	NA	2	"DOCK3,MANF"
TCGA.AG.A01W.01A	3	51411182	51642594	34	-0.2536	NEUTRAL	NA	5	"DOCK3,MANF,RAD54L2,RBM15B,VPRBP"
TCGA.CK.5914.01A	3	51411862	51418504	4	-0.19	NEUTRAL	NA	1	DOCK3
TCGA.AA.3862.01A	3	51425118	53220236	498	0.1214	NEUTRAL	NA	50	"ABHD14A,ABHD14B,ACY1,ALAS1,BAP1,DNAH1,DUSP7,GLT8D1,GLYCTK,GNL3,GPR62,GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,ITIH1,ITIH3,ITIH4,MANF,MUSTN1,NEK4,NISCH,NT5DC2,PARP3,PBRM1,PCBP4,PHF7,POC1A,PPM1M,PRKCD,RAD54L2,RBM15B,RFT1,RPL29,RRP9,SEMA3G,SFMBT1,SMIM4,SPCS1,STAB1,TEX264,TLR9,TMEM110,TMEM110-MUSTN1,TNNC1,TWF2,VPRBP,WDR82"
TCGA.AA.A02K.01A	3	51430410	52029381	110	-0.2325	NEUTRAL	NA	18	"ABHD14A,ABHD14B,ACY1,GPR62,GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,PARP3,PCBP4,RAD54L2,RBM15B,RPL29,RRP9,TEX264,VPRBP"
TCGA.AF.3914.01A	3	51432800	51982280	79	-0.0796	NEUTRAL	NA	12	"GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,PARP3,RAD54L2,RBM15B,RRP9,TEX264,VPRBP"
TCGA.AG.4009.01A	3	51440527	51671185	29	-0.0633	NEUTRAL	NA	2	"RAD54L2,VPRBP"
TCGA.AA.A01Q.01A	3	51440527	51742959	27	0.1153	NEUTRAL	NA	4	"GRM2,RAD54L2,TEX264,VPRBP"
TCGA.CK.5914.01A	3	51440527	51972063	67	0.1784	NEUTRAL	NA	10	"GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,RAD54L2,RRP9,TEX264,VPRBP"
TCGA.AA.A010.01A	3	51454185	51517708	15	-0.0699	NEUTRAL	NA	1	VPRBP
TCGA.AA.A00N.01A	3	51454185	51977330	65	0.0682	NEUTRAL	NA	11	"GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,PARP3,RAD54L2,RRP9,TEX264,VPRBP"
TCGA.AG.A01W.01A	3	51644603	51666601	12	0.211	NEUTRAL	NA	1	RAD54L2
TCGA.AA.A00Q.01A	3	51663300	52535145	170	-0.336	NEUTRAL	NA	31	"ABHD14A,ABHD14B,ACY1,ALAS1,BAP1,DNAH1,DUSP7,GLYCTK,GPR62,GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,NISCH,PARP3,PCBP4,PHF7,POC1A,PPM1M,RAD54L2,RPL29,RRP9,SEMA3G,STAB1,TEX264,TLR9,TNNC1,TWF2,WDR82"
TCGA.AG.A01W.01A	3	51669030	51953825	36	-0.1693	NEUTRAL	NA	8	"GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,RAD54L2,TEX264"
TCGA.AG.4009.01A	3	51672113	51897056	25	-0.3964	NEUTRAL	NA	6	"GRM2,IQCF2,IQCF3,IQCF6,RAD54L2,TEX264"
TCGA.AG.A015.01A	3	51691541	51982280	36	-0.469	NEUTRAL	NA	10	"GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,PARP3,RAD54L2,RRP9,TEX264"
TCGA.AA.A010.01A	3	51733401	51746437	4	-0.4087	NEUTRAL	NA	2	"GRM2,TEX264"
TCGA.AG.4009.01A	3	51907749	51971533	10	0.2187	NEUTRAL	NA	3	"IQCF1,IQCF5,RRP9"
TCGA.AA.3967.01A	3	51930791	52357763	98	0.0344	NEUTRAL	NA	18	"ABHD14A,ABHD14B,ACY1,ALAS1,DNAH1,DUSP7,GLYCTK,GPR62,IQCF1,PARP3,PCBP4,POC1A,PPM1M,RPL29,RRP9,TLR9,TWF2,WDR82"
TCGA.AG.A01W.01A	3	51964678	52064876	25	0.1727	NEUTRAL	NA	8	"ABHD14A,ABHD14B,ACY1,GPR62,PARP3,PCBP4,RPL29,RRP9"
TCGA.AG.4009.01A	3	51972063	51982280	11	-0.2054	NEUTRAL	NA	2	"PARP3,RRP9"
TCGA.AG.3909.01A	3	51975387	52183785	42	-0.0937	NEUTRAL	NA	10	"ABHD14A,ABHD14B,ACY1,DUSP7,GPR62,PARP3,PCBP4,POC1A,RPL29,RRP9"
TCGA.AG.A015.01A	3	51989622	52269007	51	-0.0237	NEUTRAL	NA	11	"ABHD14A,ABHD14B,ACY1,ALAS1,DUSP7,GPR62,PCBP4,POC1A,RPL29,TLR9,TWF2"
TCGA.AG.A00C.01A	3	52005424	52159066	20	0.1853	NEUTRAL	NA	6	"ABHD14A,ABHD14B,ACY1,DUSP7,POC1A,RPL29"
TCGA.AG.3891.01A	3	52014387	52282924	48	0.2537	NEUTRAL	NA	9	"ABHD14A,ACY1,ALAS1,DUSP7,POC1A,PPM1M,RPL29,TLR9,TWF2"
TCGA.AG.3906.01A	3	52014811	52283634	48	0.201	NEUTRAL	NA	9	"ABHD14A,ACY1,ALAS1,DUSP7,POC1A,PPM1M,RPL29,TLR9,TWF2"
TCGA.AG.A01W.01A	3	52084903	52234494	24	-0.175	NEUTRAL	NA	3	"ALAS1,DUSP7,POC1A"
TCGA.A6.3808.01A	3	52087939	52382872	69	-0.1167	NEUTRAL	NA	9	"ALAS1,DNAH1,DUSP7,GLYCTK,POC1A,PPM1M,TLR9,TWF2,WDR82"
TCGA.AF.3914.01A	3	52089829	52159066	6	-0.2866	NEUTRAL	NA	2	"DUSP7,POC1A"
TCGA.CK.5914.01A	3	52089829	52188283	13	0.1158	NEUTRAL	NA	2	"DUSP7,POC1A"
TCGA.AD.6889	3	52091253	60303503	2992	-0.0268	NEUTRAL	NA	66	"ABHD6,ACOX2,ACTR8,ALAS1,APPL1,ARF4,ARHGEF3,ASB14,BAP1,C3orf67,CACNA1D,CACNA2D3,CCDC66,CHDH,DCP1A,DENND6A,DNAH1,DNAH12,DNASE1L3,ERC2,FAM107A,FAM208A,FAM3D,FHIT,FLNB,GLT8D1,GLYCTK,GNL3,HESX1,IL17RB,IL17RD,ITIH1,ITIH3,ITIH4,KCTD6,LRTM1,MUSTN1,NEK4,NISCH,NT5DC2,PBRM1,PDE12,PDHB,PHF7,POC1A,PPM1M,PRKCD,PXK,RFT1,RPP14,SELK,SEMA3G,SFMBT1,SLMAP,SMIM4,SPATA12,SPCS1,STAB1,TKT,TLR9,TMEM110,TMEM110-MUSTN1,TNNC1,TWF2,WDR82,WNT5A"
TCGA.AG.4009.01A	3	52109856	52263627	25	0.1625	NEUTRAL	NA	4	"ALAS1,POC1A,TLR9,TWF2"
TCGA.AG.A00C.01A	3	52172136	52180956	3	-0.4027	NEUTRAL	NA	1	POC1A
TCGA.AF.3914.01A	3	52172136	52245320	14	0.3536	NEUTRAL	NA	2	"ALAS1,POC1A"
TCGA.AA.A02K.01A	3	52172137	59999695	891	-0.3036	NEUTRAL	NA	66	"ABHD6,ACOX2,ACTR8,ALAS1,APPL1,ARF4,ARHGEF3,ASB14,BAP1,C3orf67,CACNA1D,CACNA2D3,CCDC66,CHDH,DCP1A,DENND6A,DNAH1,DNAH12,DNASE1L3,ERC2,FAM107A,FAM208A,FAM3D,FHIT,FLNB,GLT8D1,GLYCTK,GNL3,HESX1,IL17RB,IL17RD,ITIH1,ITIH3,ITIH4,KCTD6,LRTM1,MUSTN1,NEK4,NISCH,NT5DC2,PBRM1,PDE12,PDHB,PHF7,POC1A,PPM1M,PRKCD,PXK,RFT1,RPP14,SELK,SEMA3G,SFMBT1,SLMAP,SMIM4,SPATA12,SPCS1,STAB1,TKT,TLR9,TMEM110,TMEM110-MUSTN1,TNNC1,TWF2,WDR82,WNT5A"
TCGA.AG.A00C.01A	3	52183207	52304697	36	0.3395	NEUTRAL	NA	6	"ALAS1,POC1A,PPM1M,TLR9,TWF2,WDR82"
TCGA.CK.5914.01A	3	52233237	52356440	45	-0.5119	NEUTRAL	NA	7	"ALAS1,DNAH1,GLYCTK,PPM1M,TLR9,TWF2,WDR82"
TCGA.AG.A01W.01A	3	52238074	52258730	12	0.3281	NEUTRAL	NA	2	"ALAS1,TLR9"
TCGA.AF.3914.01A	3	52246222	52269007	11	-0.106	NEUTRAL	NA	3	"ALAS1,TLR9,TWF2"
TCGA.AG.A01W.01A	3	52265174	52303235	16	-0.4445	NEUTRAL	NA	3	"PPM1M,TWF2,WDR82"
TCGA.AA.A01Q.01A	3	52272924	52436263	47	0.0728	NEUTRAL	NA	6	"BAP1,DNAH1,GLYCTK,PPM1M,TWF2,WDR82"
TCGA.AG.A015.01A	3	52281092	52383210	33	-0.3487	NEUTRAL	NA	4	"DNAH1,GLYCTK,PPM1M,WDR82"
TCGA.AF.3914.01A	3	52293176	52312170	8	-0.4447	NEUTRAL	NA	1	WDR82
TCGA.AG.3909.01A	3	52312170	52396355	34	0.3745	NEUTRAL	NA	3	"DNAH1,GLYCTK,WDR82"
TCGA.AG.A00C.01A	3	52312170	52400701	37	-0.181	NEUTRAL	NA	3	"DNAH1,GLYCTK,WDR82"
TCGA.AF.3914.01A	3	52324421	52387130	24	0.0668	NEUTRAL	NA	2	"DNAH1,GLYCTK"
TCGA.AG.4009.01A	3	52324421	52393882	29	0.1072	NEUTRAL	NA	2	"DNAH1,GLYCTK"
TCGA.AG.3906.01A	3	52324939	52685696	169	0.0233	NEUTRAL	NA	11	"BAP1,DNAH1,GLYCTK,NISCH,NT5DC2,PBRM1,PHF7,SEMA3G,SMIM4,STAB1,TNNC1"
TCGA.AG.3891.01A	3	52325711	52702462	184	0.0965	NEUTRAL	NA	11	"BAP1,DNAH1,GLYCTK,NISCH,NT5DC2,PBRM1,PHF7,SEMA3G,SMIM4,STAB1,TNNC1"
TCGA.AG.A01W.01A	3	52331490	52359009	13	-0.0862	NEUTRAL	NA	1	DNAH1
TCGA.AA.A010.01A	3	52356440	52426430	54	0.1376	NEUTRAL	NA	1	DNAH1
TCGA.CK.5914.01A	3	52357763	52396355	27	-0.1256	NEUTRAL	NA	1	DNAH1
TCGA.AG.A01W.01A	3	52359508	52395170	35	0.3349	NEUTRAL	NA	1	DNAH1
TCGA.AA.A00N.01A	3	52384477	52395638	13	0.0834	NEUTRAL	NA	1	DNAH1
TCGA.AG.A015.01A	3	52384477	52434330	41	0.1472	NEUTRAL	NA	1	DNAH1
TCGA.AF.3914.01A	3	52388808	52420147	29	-0.4228	NEUTRAL	NA	1	DNAH1
TCGA.AG.4009.01A	3	52394278	52416296	17	-0.3885	NEUTRAL	NA	1	DNAH1
TCGA.AG.A01W.01A	3	52395667	52406717	13	0.0381	NEUTRAL	NA	1	DNAH1
TCGA.AG.A00C.01A	3	52402717	52513715	70	0.2231	NEUTRAL	NA	6	"BAP1,DNAH1,NISCH,PHF7,SEMA3G,TNNC1"
TCGA.AG.A01W.01A	3	52415848	52526317	79	-0.0255	NEUTRAL	NA	6	"BAP1,DNAH1,NISCH,PHF7,SEMA3G,TNNC1"
TCGA.AG.4009.01A	3	52417350	52551285	97	-0.0624	NEUTRAL	NA	7	"BAP1,DNAH1,NISCH,PHF7,SEMA3G,STAB1,TNNC1"
TCGA.AA.A010.01A	3	52427301	52478880	44	-0.2681	NEUTRAL	NA	4	"BAP1,DNAH1,PHF7,SEMA3G"
TCGA.AA.3967.01A	3	52430362	77607043	1098	-0.1899	NEUTRAL	NA	98	"ABHD6,ACOX2,ACTR8,ADAMTS9,APPL1,ARF4,ARHGEF3,ARL6IP5,ASB14,ATXN7,BAP1,C3orf14,C3orf67,CACNA1D,CACNA2D3,CADPS,CCDC66,CHDH,CNTN3,DCP1A,DENND6A,DNAH1,DNAH12,DNASE1L3,EBLN2,EIF4E3,EOGT,ERC2,FAM107A,FAM19A1,FAM19A4,FAM208A,FAM3D,FEZF2,FHIT,FLNB,FOXP1,FRG2C,FRMD4B,GLT8D1,GNL3,GPR27,GXYLT2,HESX1,IL17RB,IL17RD,ITIH1,ITIH3,ITIH4,KBTBD8,KCTD6,LMOD3,LRIG1,LRTM1,MAGI1,MITF,MUSTN1,NEK4,NISCH,NT5DC2,PBRM1,PDE12,PDHB,PDZRN3,PHF7,PPP4R2,PRICKLE2,PRKCD,PROK2,PSMD6,PTPRG,PXK,RFT1,ROBO2,RPP14,RYBP,SELK,SEMA3G,SFMBT1,SHQ1,SLC25A26,SLMAP,SMIM4,SNTN,SPATA12,SPCS1,STAB1,SUCLG2,SYNPR,THOC7,TKT,TMEM110,TMEM110-MUSTN1,TMF1,TNNC1,UBA3,WNT5A,ZNF717"
TCGA.AG.A015.01A	3	52436563	129284693	3066	-0.1628	NEUTRAL	NA	315	Too-Many
TCGA.AA.A02W.01A	3	52439729	53902708	300	0.18	NEUTRAL	NA	28	"ACTR8,BAP1,CACNA1D,CHDH,DCP1A,GLT8D1,GNL3,IL17RB,ITIH1,ITIH3,ITIH4,MUSTN1,NEK4,NISCH,NT5DC2,PBRM1,PHF7,PRKCD,RFT1,SEMA3G,SFMBT1,SMIM4,SPCS1,STAB1,TKT,TMEM110,TMEM110-MUSTN1,TNNC1"
TCGA.AF.3914.01A	3	52454285	62318913	710	-0.0571	NEUTRAL	NA	59	"ABHD6,ACOX2,ACTR8,APPL1,ARF4,ARHGEF3,ASB14,C3orf14,C3orf67,CACNA1D,CACNA2D3,CCDC66,CHDH,DCP1A,DENND6A,DNAH12,DNASE1L3,ERC2,FAM107A,FAM208A,FAM3D,FHIT,FLNB,GLT8D1,GNL3,HESX1,IL17RB,IL17RD,ITIH1,ITIH3,ITIH4,KCTD6,LRTM1,MUSTN1,NEK4,NISCH,NT5DC2,PBRM1,PDE12,PDHB,PHF7,PRKCD,PTPRG,PXK,RFT1,RPP14,SELK,SEMA3G,SFMBT1,SLMAP,SMIM4,SPATA12,SPCS1,STAB1,TKT,TMEM110,TMEM110-MUSTN1,TNNC1,WNT5A"
TCGA.AA.A02J.01A	3	52454882	137880709	3444	-0.0835	NEUTRAL	NA	359	Too-Many
TCGA.AA.A00D.01A	3	52456186	52588688	72	-0.1817	NEUTRAL	NA	8	"NISCH,NT5DC2,PBRM1,PHF7,SEMA3G,SMIM4,STAB1,TNNC1"
TCGA.AA.A01Q.01A	3	52456726	52487918	19	-0.3952	NEUTRAL	NA	3	"PHF7,SEMA3G,TNNC1"
TCGA.AA.A00N.01A	3	52456726	52584420	88	-0.4079	NEUTRAL	NA	8	"NISCH,NT5DC2,PBRM1,PHF7,SEMA3G,SMIM4,STAB1,TNNC1"
TCGA.AG.A00C.01A	3	52514161	52677224	59	-0.1928	NEUTRAL	NA	5	"NISCH,NT5DC2,PBRM1,SMIM4,STAB1"
TCGA.AG.3909.01A	3	52535145	52720029	62	0.3154	NEUTRAL	NA	5	"GNL3,NT5DC2,PBRM1,SMIM4,STAB1"
TCGA.AA.A01Q.01A	3	52535647	52568498	39	-0.2932	NEUTRAL	NA	2	"NT5DC2,STAB1"
TCGA.AA.A00Q.01A	3	52535647	52588688	39	0.0799	NEUTRAL	NA	4	"NT5DC2,PBRM1,SMIM4,STAB1"
TCGA.AG.A01W.01A	3	52545784	52688582	30	-0.124	NEUTRAL	NA	4	"NT5DC2,PBRM1,SMIM4,STAB1"
TCGA.AG.A036.01A	3	52549414	199381001	6859	0.2109	NEUTRAL	NA	654	Too-Many
TCGA.AG.4009.01A	3	52568498	52702462	27	-0.0252	NEUTRAL	NA	3	"NT5DC2,PBRM1,SMIM4"
TCGA.CK.5914.01A	3	52582052	52696102	27	0.1366	NEUTRAL	NA	1	PBRM1
TCGA.AA.A00N.01A	3	52588688	52610510	6	0.0273	NEUTRAL	NA	1	PBRM1
TCGA.AA.A00Q.01A	3	52595742	52794771	55	-0.3174	NEUTRAL	NA	5	"GLT8D1,GNL3,NEK4,PBRM1,SPCS1"
TCGA.AA.A010.01A	3	52610510	52685696	18	0.0285	NEUTRAL	NA	1	PBRM1
TCGA.AG.A00C.01A	3	52678686	52713541	8	0.1589	NEUTRAL	NA	1	PBRM1
TCGA.AA.A00N.01A	3	52692166	52702462	3	-0.3615	NEUTRAL	NA	1	PBRM1
TCGA.AG.A01W.01A	3	52699607	52709270	13	0.1022	NEUTRAL	NA	1	PBRM1
TCGA.AA.A01Q.01A	3	52712488	52952421	97	-0.3157	NEUTRAL	NA	12	"GLT8D1,GNL3,ITIH1,ITIH3,ITIH4,MUSTN1,NEK4,PBRM1,SFMBT1,SPCS1,TMEM110,TMEM110-MUSTN1"
TCGA.AG.A01W.01A	3	52715066	52760947	12	-0.2722	NEUTRAL	NA	5	"GLT8D1,GNL3,NEK4,PBRM1,SPCS1"
TCGA.AA.A00D.01A	3	52720714	52741656	19	0.1038	NEUTRAL	NA	3	"GLT8D1,GNL3,SPCS1"
TCGA.AG.3906.01A	3	52731689	58190444	468	0.0288	NEUTRAL	NA	38	"ACTR8,APPL1,ARF4,ARHGEF3,ASB14,CACNA1D,CACNA2D3,CCDC66,CHDH,DCP1A,DENND6A,DNAH12,DNASE1L3,ERC2,FAM208A,FLNB,GLT8D1,HESX1,IL17RB,IL17RD,ITIH1,ITIH3,ITIH4,LRTM1,MUSTN1,NEK4,PDE12,PRKCD,RFT1,SELK,SFMBT1,SLMAP,SPATA12,SPCS1,TKT,TMEM110,TMEM110-MUSTN1,WNT5A"
TCGA.AG.4009.01A	3	52734236	52745738	4	-0.2793	NEUTRAL	NA	3	"GLT8D1,NEK4,SPCS1"
TCGA.AA.A00D.01A	3	52745738	53531156	125	-0.3446	NEUTRAL	NA	13	"CACNA1D,DCP1A,ITIH1,ITIH3,ITIH4,MUSTN1,NEK4,PRKCD,RFT1,SFMBT1,TKT,TMEM110,TMEM110-MUSTN1"
TCGA.AG.A01W.01A	3	52769805	52789294	12	0.1557	NEUTRAL	NA	1	NEK4
TCGA.AA.A00N.01A	3	52771565	52785951	8	-0.2314	NEUTRAL	NA	1	NEK4
TCGA.AG.3909.01A	3	52771565	52785951	8	0.2552	NEUTRAL	NA	1	NEK4
TCGA.AG.A00C.01A	3	52771565	52785951	8	-0.0382	NEUTRAL	NA	1	NEK4
TCGA.CK.5914.01A	3	52771565	52785951	8	0.1152	NEUTRAL	NA	1	NEK4
TCGA.AG.4009.01A	3	52771565	52889340	79	0.3251	NEUTRAL	NA	7	"ITIH1,ITIH3,ITIH4,MUSTN1,NEK4,TMEM110,TMEM110-MUSTN1"
TCGA.AG.3891.01A	3	52777321	108822644	1623	-0.1108	NEUTRAL	NA	156	Too-Many
TCGA.AG.A01W.01A	3	52790945	52803806	12	-0.3553	NEUTRAL	NA	1	NEK4
TCGA.AG.A00C.01A	3	52794771	52821527	17	0.3392	NEUTRAL	NA	2	"ITIH1,NEK4"
TCGA.AG.A01W.01A	3	52804568	52812874	12	0.2336	NEUTRAL	NA	2	"ITIH1,NEK4"
TCGA.AA.A00N.01A	3	52804627	52816954	9	-0.3343	NEUTRAL	NA	2	"ITIH1,NEK4"
TCGA.CK.5914.01A	3	52804627	52834929	30	-0.015	NEUTRAL	NA	3	"ITIH1,ITIH3,NEK4"
TCGA.AG.3909.01A	3	52811591	52816954	8	-0.2513	NEUTRAL	NA	1	ITIH1
TCGA.AA.A00O.01A	3	52811591	69031893	726	-0.006	NEUTRAL	NA	64	"ABHD6,ACOX2,ACTR8,ADAMTS9,APPL1,ARF4,ARHGEF3,ASB14,ATXN7,C3orf14,C3orf67,CACNA1D,CACNA2D3,CADPS,CCDC66,CHDH,DCP1A,DENND6A,DNAH12,DNASE1L3,EOGT,ERC2,FAM107A,FAM19A1,FAM19A4,FAM208A,FAM3D,FEZF2,FHIT,FLNB,HESX1,IL17RB,IL17RD,ITIH1,ITIH3,ITIH4,KBTBD8,KCTD6,LRIG1,LRTM1,MAGI1,MUSTN1,PDE12,PDHB,PRICKLE2,PRKCD,PSMD6,PTPRG,PXK,RFT1,RPP14,SELK,SFMBT1,SLC25A26,SLMAP,SNTN,SPATA12,SUCLG2,SYNPR,THOC7,TKT,TMEM110,TMEM110-MUSTN1,WNT5A"
TCGA.AG.A01W.01A	3	52813685	52817592	7	-0.2199	NEUTRAL	NA	1	ITIH1
TCGA.AA.A00Q.01A	3	52815945	52825781	13	-0.2959	NEUTRAL	NA	1	ITIH1
TCGA.AG.3909.01A	3	52818263	52823658	8	0.2045	NEUTRAL	NA	1	ITIH1
TCGA.AG.A00C.01A	3	52821961	52886580	51	-0.2434	NEUTRAL	NA	6	"ITIH1,ITIH3,ITIH4,MUSTN1,TMEM110,TMEM110-MUSTN1"
TCGA.AG.A01W.01A	3	52827057	52929553	33	-0.1429	NEUTRAL	NA	5	"ITIH3,ITIH4,MUSTN1,TMEM110,TMEM110-MUSTN1"
TCGA.AA.A00Q.01A	3	52847371	53531156	90	-0.2657	NEUTRAL	NA	10	"CACNA1D,DCP1A,ITIH4,MUSTN1,PRKCD,RFT1,SFMBT1,TKT,TMEM110,TMEM110-MUSTN1"
TCGA.AA.3514	3	52851257	197833757	41487	-0.0108	NEUTRAL	NA	643	Too-Many
TCGA.A6.3808.01A	3	52858159	53922364	170	-0.2478	NEUTRAL	NA	14	"ACTR8,CACNA1D,CHDH,DCP1A,IL17RB,ITIH4,MUSTN1,PRKCD,RFT1,SELK,SFMBT1,TKT,TMEM110,TMEM110-MUSTN1"
TCGA.AG.3909.01A	3	52886580	52952421	11	-0.2899	NEUTRAL	NA	3	"SFMBT1,TMEM110,TMEM110-MUSTN1"
TCGA.CK.5914.01A	3	52886580	53346219	69	0.0789	NEUTRAL	NA	7	"DCP1A,PRKCD,RFT1,SFMBT1,TKT,TMEM110,TMEM110-MUSTN1"
TCGA.AG.A00C.01A	3	52889340	52954502	11	0.3426	NEUTRAL	NA	3	"SFMBT1,TMEM110,TMEM110-MUSTN1"
TCGA.AG.4009.01A	3	52950102	52988299	12	-0.1612	NEUTRAL	NA	1	SFMBT1
TCGA.AG.A01W.01A	3	52952363	53795848	94	-0.0816	NEUTRAL	NA	6	"CACNA1D,DCP1A,PRKCD,RFT1,SFMBT1,TKT"
TCGA.AG.A00C.01A	3	52955684	53882607	111	-0.0757	NEUTRAL	NA	8	"CACNA1D,CHDH,DCP1A,IL17RB,PRKCD,RFT1,SFMBT1,TKT"
TCGA.AG.4009.01A	3	53003044	53381358	50	0.12	NEUTRAL	NA	5	"DCP1A,PRKCD,RFT1,SFMBT1,TKT"
TCGA.AA.A01Q.01A	3	53133345	53910597	113	-0.3547	NEUTRAL	NA	8	"ACTR8,CACNA1D,CHDH,DCP1A,IL17RB,PRKCD,RFT1,TKT"
TCGA.AA.A010.01A	3	53153858	53324790	37	-0.243	NEUTRAL	NA	4	"DCP1A,PRKCD,RFT1,TKT"
TCGA.AG.3909.01A	3	53215452	53226086	13	0.0466	NEUTRAL	NA	1	PRKCD
TCGA.AA.A01F.01A	3	53222686	119501552	1572	-0.3362	NEUTRAL	NA	201	Too-Many
TCGA.AG.3909.01A	3	53353368	53766790	23	-0.0838	NEUTRAL	NA	2	"CACNA1D,DCP1A"
TCGA.AA.3850	3	53457308	53662969	76	0.09035	NEUTRAL	NA	1	CACNA1D
TCGA.AA.A00Q.01A	3	53535605	53922364	75	-0.4866	NEUTRAL	NA	5	"ACTR8,CACNA1D,CHDH,IL17RB,SELK"
TCGA.AA.A010.01A	3	53684766	53699645	3	0.0512	NEUTRAL	NA	1	CACNA1D
TCGA.CK.5914.01A	3	53684766	53809876	32	-0.0341	NEUTRAL	NA	1	CACNA1D
TCGA.AG.4009.01A	3	53684766	53843958	42	0.2314	NEUTRAL	NA	1	CACNA1D
TCGA.AA.A00N.01A	3	53684766	53845092	44	0.1341	NEUTRAL	NA	1	CACNA1D
TCGA.AG.3909.01A	3	53769351	53814002	17	0.3501	NEUTRAL	NA	1	CACNA1D
TCGA.AG.A01W.01A	3	53809267	54132540	44	0.247	NEUTRAL	NA	5	"ACTR8,CACNA1D,CHDH,IL17RB,SELK"
TCGA.AG.3909.01A	3	53815556	53845092	10	-0.324	NEUTRAL	NA	1	CACNA1D
TCGA.AA.A010.01A	3	53834235	56593512	106	-0.1103	NEUTRAL	NA	10	"ACTR8,CACNA1D,CACNA2D3,CCDC66,CHDH,ERC2,IL17RB,LRTM1,SELK,WNT5A"
TCGA.AG.4009.01A	3	53845092	53886869	12	-0.504	NEUTRAL	NA	3	"CACNA1D,CHDH,IL17RB"
TCGA.AA.A00D.01A	3	53852913	56649108	50	-0.1535	NEUTRAL	NA	9	"ACTR8,CACNA2D3,CCDC66,CHDH,ERC2,IL17RB,LRTM1,SELK,WNT5A"
TCGA.AG.4009.01A	3	53889244	57994240	210	-0.0422	NEUTRAL	NA	21	"ACTR8,APPL1,ARF4,ARHGEF3,ASB14,CACNA2D3,CCDC66,DENND6A,DNAH12,ERC2,FAM208A,FLNB,HESX1,IL17RB,IL17RD,LRTM1,PDE12,SELK,SLMAP,SPATA12,WNT5A"
TCGA.AA.A02W.01A	3	53910597	60522576	330	0.0045	NEUTRAL	NA	31	"ABHD6,ACOX2,ACTR8,APPL1,ARF4,ARHGEF3,ASB14,C3orf67,CACNA2D3,CCDC66,DENND6A,DNAH12,DNASE1L3,ERC2,FAM107A,FAM208A,FAM3D,FHIT,FLNB,HESX1,IL17RD,KCTD6,LRTM1,PDE12,PDHB,PXK,RPP14,SELK,SLMAP,SPATA12,WNT5A"
TCGA.AA.A01Q.01A	3	53911260	56835679	55	0.1891	NEUTRAL	NA	9	"ACTR8,ARHGEF3,CACNA2D3,CCDC66,ERC2,FAM208A,LRTM1,SELK,WNT5A"
TCGA.AA.3850	3	53933803	56519322	1121	-0.00585	NEUTRAL	NA	4	"CACNA2D3,ERC2,LRTM1,WNT5A"
TCGA.DY.A1DG	3	53962588	100034848	13465	0.0029	NEUTRAL	NA	108	Too-Many
TCGA.AG.A00C.01A	3	54157491	58196456	240	-0.1034	NEUTRAL	NA	19	"APPL1,ARF4,ARHGEF3,ASB14,CACNA2D3,CCDC66,DENND6A,DNAH12,DNASE1L3,ERC2,FAM208A,FLNB,HESX1,IL17RD,LRTM1,PDE12,SLMAP,SPATA12,WNT5A"
TCGA.AA.3511	3	54197561	59691724	1972	0.0207	NEUTRAL	NA	28	"ABHD6,ACOX2,APPL1,ARF4,ARHGEF3,ASB14,C3orf67,CACNA2D3,CCDC66,DENND6A,DNAH12,DNASE1L3,ERC2,FAM107A,FAM208A,FAM3D,FLNB,HESX1,IL17RD,KCTD6,LRTM1,PDE12,PDHB,PXK,RPP14,SLMAP,SPATA12,WNT5A"
TCGA.AA.3941	3	54242040	56515845	1013	0.0323	NEUTRAL	NA	4	"CACNA2D3,ERC2,LRTM1,WNT5A"
TCGA.AG.A01W.01A	3	54329460	56580273	65	-0.0166	NEUTRAL	NA	4	"CACNA2D3,ERC2,LRTM1,WNT5A"
TCGA.AA.A00N.01A	3	54354428	54676106	8	0.0461	NEUTRAL	NA	1	CACNA2D3
TCGA.AG.3909.01A	3	54354428	54676106	8	0.1735	NEUTRAL	NA	1	CACNA2D3
TCGA.AA.3952	3	54562531	75439780	8672	-0.012	NEUTRAL	NA	65	"ABHD6,ACOX2,ADAMTS9,APPL1,ARF4,ARHGEF3,ARL6IP5,ASB14,ATXN7,C3orf14,C3orf67,CACNA2D3,CADPS,CCDC66,CNTN3,DENND6A,DNAH12,DNASE1L3,EBLN2,EIF4E3,EOGT,ERC2,FAM107A,FAM19A1,FAM19A4,FAM208A,FAM3D,FEZF2,FHIT,FLNB,FOXP1,FRMD4B,GPR27,GXYLT2,HESX1,IL17RD,KBTBD8,KCTD6,LMOD3,LRIG1,LRTM1,MAGI1,MITF,PDE12,PDHB,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,PXK,RPP14,RYBP,SHQ1,SLC25A26,SLMAP,SNTN,SPATA12,SUCLG2,SYNPR,THOC7,TMF1,UBA3,WNT5A"
TCGA.AA.A017.01A	3	54615771	197765401	5909	0.0036	NEUTRAL	NA	629	Too-Many
TCGA.AA.A00Q.01A	3	54676106	56651108	24	0.119	NEUTRAL	NA	5	"CACNA2D3,CCDC66,ERC2,LRTM1,WNT5A"
TCGA.AA.A02E.01A	3	54905541	101373501	1117	0.1645	NEUTRAL	NA	120	Too-Many
TCGA.DC.4745	3	55929847	61074228	2107	0.3227	NEUTRAL	NA	26	"ABHD6,ACOX2,APPL1,ARF4,ARHGEF3,ASB14,C3orf67,CCDC66,DENND6A,DNAH12,DNASE1L3,ERC2,FAM107A,FAM208A,FAM3D,FHIT,FLNB,HESX1,IL17RD,KCTD6,PDE12,PDHB,PXK,RPP14,SLMAP,SPATA12"
TCGA.AY.A69D	3	56253676	116104520	16818	0.2649	NEUTRAL	NA	175	Too-Many
TCGA.AA.3850	3	56521163	58788311	612	0.37745	NEUTRAL	NA	24	"ABHD6,ACOX2,APPL1,ARF4,ARHGEF3,ASB14,C3orf67,CCDC66,DENND6A,DNAH12,DNASE1L3,FAM107A,FAM208A,FAM3D,FLNB,HESX1,IL17RD,KCTD6,PDE12,PDHB,PXK,RPP14,SLMAP,SPATA12"
TCGA.CK.4948.01B	3	56591176	56600595	5	-0.5127	NEUTRAL	NA	1	CCDC66
TCGA.AG.3909.01A	3	56597755	57232730	53	0.1808	NEUTRAL	NA	6	"ARHGEF3,CCDC66,FAM208A,HESX1,IL17RD,SPATA12"
TCGA.A6.3808.01A	3	56597755	57419410	123	-0.3901	NEUTRAL	NA	9	"APPL1,ARHGEF3,ASB14,CCDC66,DNAH12,FAM208A,HESX1,IL17RD,SPATA12"
TCGA.AA.3861.01A	3	56597755	89498338	847	-0.0142	NEUTRAL	NA	75	"ABHD6,ACOX2,ADAMTS9,APPL1,ARF4,ARHGEF3,ARL6IP5,ASB14,ATXN7,C3orf14,C3orf38,C3orf67,CADM2,CADPS,CCDC66,CGGBP1,CHMP2B,CNTN3,DENND6A,DNAH12,DNASE1L3,EBLN2,EIF4E3,EOGT,EPHA3,FAM107A,FAM19A1,FAM19A4,FAM208A,FAM3D,FEZF2,FHIT,FLNB,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HESX1,HTR1F,IL17RD,KBTBD8,KCTD6,LMOD3,LRIG1,MAGI1,MITF,PDE12,PDHB,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,PXK,ROBO1,ROBO2,RPP14,RYBP,SHQ1,SLC25A26,SLMAP,SNTN,SPATA12,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AA.3862.01A	3	56597755	89521575	851	0.0739	NEUTRAL	NA	75	"ABHD6,ACOX2,ADAMTS9,APPL1,ARF4,ARHGEF3,ARL6IP5,ASB14,ATXN7,C3orf14,C3orf38,C3orf67,CADM2,CADPS,CCDC66,CGGBP1,CHMP2B,CNTN3,DENND6A,DNAH12,DNASE1L3,EBLN2,EIF4E3,EOGT,EPHA3,FAM107A,FAM19A1,FAM19A4,FAM208A,FAM3D,FEZF2,FHIT,FLNB,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HESX1,HTR1F,IL17RD,KBTBD8,KCTD6,LMOD3,LRIG1,MAGI1,MITF,PDE12,PDHB,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,PXK,ROBO1,ROBO2,RPP14,RYBP,SHQ1,SLC25A26,SLMAP,SNTN,SPATA12,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.CK.4948.01B	3	56600927	108833161	1433	0.0085	NEUTRAL	NA	135	Too-Many
TCGA.AG.A01W.01A	3	56602027	56738298	35	0.2857	NEUTRAL	NA	2	"CCDC66,FAM208A"
TCGA.AA.A00N.01A	3	56647570	56682789	21	0.3686	NEUTRAL	NA	2	"CCDC66,FAM208A"
TCGA.CK.5914.01A	3	56647570	56787464	37	-0.1317	NEUTRAL	NA	3	"ARHGEF3,CCDC66,FAM208A"
TCGA.AA.A00D.01A	3	56649903	57631339	92	-0.4426	NEUTRAL	NA	12	"APPL1,ARF4,ARHGEF3,ASB14,CCDC66,DENND6A,DNAH12,FAM208A,HESX1,IL17RD,PDE12,SPATA12"
TCGA.AA.A00Q.01A	3	56652119	63825285	330	-0.3043	NEUTRAL	NA	32	"ABHD6,ACOX2,APPL1,ARF4,ARHGEF3,ASB14,C3orf14,C3orf67,CADPS,CCDC66,DENND6A,DNAH12,DNASE1L3,FAM107A,FAM208A,FAM3D,FEZF2,FHIT,FLNB,HESX1,IL17RD,KCTD6,PDE12,PDHB,PTPRG,PXK,RPP14,SLMAP,SNTN,SPATA12,SYNPR,THOC7"
TCGA.AA.A010.01A	3	56655527	56661592	7	-0.0375	NEUTRAL	NA	2	"CCDC66,FAM208A"
TCGA.AA.A00Z.01A	3	56667155	197726075	79	-0.3345	NEUTRAL	NA	624	Too-Many
TCGA.AG.A01W.01A	3	56741255	57256404	37	-0.1294	NEUTRAL	NA	4	"ARHGEF3,HESX1,IL17RD,SPATA12"
TCGA.AA.A00N.01A	3	56766226	56992797	11	0.1495	NEUTRAL	NA	1	ARHGEF3
TCGA.AG.3605.01A	3	56785031	197726075	106	-0.3029	NEUTRAL	NA	623	Too-Many
TCGA.AA.A010.01A	3	56916271	57069080	3	-0.4404	NEUTRAL	NA	1	ARHGEF3
TCGA.AA.3848	3	57034105	59859608	878	0.0118	NEUTRAL	NA	23	"ABHD6,ACOX2,APPL1,ARF4,ARHGEF3,ASB14,C3orf67,DENND6A,DNAH12,DNASE1L3,FAM107A,FAM3D,FHIT,FLNB,HESX1,IL17RD,KCTD6,PDE12,PDHB,PXK,RPP14,SLMAP,SPATA12"
TCGA.CA.5254	3	57040668	59620666	707	0.3142	NEUTRAL	NA	22	"ABHD6,ACOX2,APPL1,ARF4,ARHGEF3,ASB14,C3orf67,DENND6A,DNAH12,DNASE1L3,FAM107A,FAM3D,FLNB,HESX1,IL17RD,KCTD6,PDE12,PDHB,PXK,RPP14,SLMAP,SPATA12"
TCGA.AA.A01Q.01A	3	57107696	57274448	16	-0.1154	NEUTRAL	NA	5	"APPL1,ARHGEF3,HESX1,IL17RD,SPATA12"
TCGA.AA.A010.01A	3	57143513	57484220	84	0.0624	NEUTRAL	NA	5	"APPL1,ASB14,DNAH12,HESX1,IL17RD"
TCGA.AA.A00N.01A	3	57148673	57261842	7	0.2205	NEUTRAL	NA	3	"APPL1,HESX1,IL17RD"
TCGA.AG.3909.01A	3	57233752	57292985	16	-0.1769	NEUTRAL	NA	2	"APPL1,HESX1"
TCGA.AA.A01Q.01A	3	57276058	58097826	95	0.2744	NEUTRAL	NA	8	"APPL1,ARF4,ASB14,DENND6A,DNAH12,FLNB,PDE12,SLMAP"
TCGA.AA.A00N.01A	3	57280077	57287687	6	-0.339	NEUTRAL	NA	1	APPL1
TCGA.CK.5914.01A	3	57290963	57357018	24	-0.0462	NEUTRAL	NA	3	"APPL1,ASB14,DNAH12"
TCGA.AA.A00N.01A	3	57290963	57422637	43	0.3711	NEUTRAL	NA	3	"APPL1,ASB14,DNAH12"
TCGA.AG.3909.01A	3	57293851	57312354	8	0.2989	NEUTRAL	NA	2	"APPL1,ASB14"
TCGA.AG.A01W.01A	3	57318172	57323521	4	-0.3443	NEUTRAL	NA	1	ASB14
TCGA.AG.A01W.01A	3	57331365	57369037	11	0.1527	NEUTRAL	NA	1	DNAH12
TCGA.AA.3941	3	57351326	57395576	12	-0.1287	NEUTRAL	NA	1	DNAH12
TCGA.AG.A01W.01A	3	57374462	57390399	7	-0.2516	NEUTRAL	NA	1	DNAH12
TCGA.CK.5914.01A	3	57386076	57419410	15	-0.0131	NEUTRAL	NA	1	DNAH12
TCGA.AG.3909.01A	3	57391341	57582737	19	-0.3067	NEUTRAL	NA	3	"ARF4,DNAH12,PDE12"
TCGA.AG.A01W.01A	3	57422227	57868614	59	-0.1033	NEUTRAL	NA	5	"ARF4,DENND6A,DNAH12,PDE12,SLMAP"
TCGA.AA.3509.01A	3	57448367	57649307	40	-0.5094	NEUTRAL	NA	4	"ARF4,DENND6A,DNAH12,PDE12"
TCGA.CK.5914.01A	3	57454448	57484220	7	-0.1502	NEUTRAL	NA	1	DNAH12
TCGA.AA.A00N.01A	3	57454448	57743340	43	-0.1691	NEUTRAL	NA	5	"ARF4,DENND6A,DNAH12,PDE12,SLMAP"
TCGA.AG.3909.01A	3	57613913	57994240	39	0.2738	NEUTRAL	NA	3	"DENND6A,FLNB,SLMAP"
TCGA.AA.A010.01A	3	57620236	58087878	44	-0.0163	NEUTRAL	NA	3	"DENND6A,FLNB,SLMAP"
TCGA.AA.A00D.01A	3	57632006	57817121	11	-0.1268	NEUTRAL	NA	2	"DENND6A,SLMAP"
TCGA.CK.5914.01A	3	57632006	57908623	30	0.102	NEUTRAL	NA	2	"DENND6A,SLMAP"
TCGA.AA.3509.01A	3	57651798	73112790	516	0.0426	NEUTRAL	NA	48	"ABHD6,ACOX2,ADAMTS9,ARL6IP5,ATXN7,C3orf14,C3orf67,CADPS,DENND6A,DNASE1L3,EBLN2,EIF4E3,EOGT,FAM107A,FAM19A1,FAM19A4,FAM3D,FEZF2,FHIT,FLNB,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,KCTD6,LMOD3,LRIG1,MAGI1,MITF,PDHB,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,PXK,RPP14,RYBP,SHQ1,SLC25A26,SLMAP,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.AG.A01W.01A	3	57869790	58087322	30	0.2368	NEUTRAL	NA	2	"FLNB,SLMAP"
TCGA.A6.3808.01A	3	57908623	58486634	95	-0.0565	NEUTRAL	NA	8	"ABHD6,DNASE1L3,FLNB,KCTD6,PDHB,PXK,RPP14,SLMAP"
TCGA.AG.4015	3	57915473	58071405	41	0.3246	NEUTRAL	NA	2	"FLNB,SLMAP"
TCGA.A6.6648	3	58000987	63079500	2469	-0.0075	NEUTRAL	NA	16	"ABHD6,ACOX2,C3orf14,C3orf67,CADPS,DNASE1L3,FAM107A,FAM3D,FEZF2,FHIT,FLNB,KCTD6,PDHB,PTPRG,PXK,RPP14"
TCGA.AG.4009.01A	3	58062743	58191141	50	0.2916	NEUTRAL	NA	2	"DNASE1L3,FLNB"
TCGA.AG.4015	3	58071643	61126820	1568	-0.0206	NEUTRAL	NA	12	"ABHD6,ACOX2,C3orf67,DNASE1L3,FAM107A,FAM3D,FHIT,FLNB,KCTD6,PDHB,PXK,RPP14"
TCGA.AG.A01W.01A	3	58091467	58343270	45	-0.2038	NEUTRAL	NA	5	"ABHD6,DNASE1L3,FLNB,PXK,RPP14"
TCGA.CK.5914.01A	3	58097826	58179031	30	-0.0441	NEUTRAL	NA	2	"DNASE1L3,FLNB"
TCGA.AA.A01Q.01A	3	58104557	58132495	16	-0.2559	NEUTRAL	NA	1	FLNB
TCGA.AA.A01Q.01A	3	58140480	58193901	14	-0.0985	NEUTRAL	NA	2	"DNASE1L3,FLNB"
TCGA.AA.A010.01A	3	58179031	58196456	7	0.0943	NEUTRAL	NA	1	DNASE1L3
TCGA.AG.4009.01A	3	58193901	58254996	5	-0.1349	NEUTRAL	NA	2	"ABHD6,DNASE1L3"
TCGA.AG.3611.01A	3	58242262	58270743	6	-0.2476	NEUTRAL	NA	1	ABHD6
TCGA.AG.A00C.01A	3	58242262	58494593	40	0.2285	NEUTRAL	NA	6	"ABHD6,ACOX2,KCTD6,PDHB,PXK,RPP14"
TCGA.AA.A01Q.01A	3	58270743	58303095	7	-0.4904	NEUTRAL	NA	2	"ABHD6,RPP14"
TCGA.AG.3611.01A	3	58271073	58490884	33	0.24	NEUTRAL	NA	6	"ABHD6,ACOX2,KCTD6,PDHB,PXK,RPP14"
TCGA.AG.4009.01A	3	58303095	58398571	17	0.0223	NEUTRAL	NA	2	"PXK,RPP14"
TCGA.AG.A01W.01A	3	58351288	58358345	7	0.3392	NEUTRAL	NA	1	PXK
TCGA.AA.A00N.01A	3	58351525	58410430	17	0.0787	NEUTRAL	NA	1	PXK
TCGA.AA.A01Q.01A	3	58351525	58410430	17	0.1639	NEUTRAL	NA	1	PXK
TCGA.CK.5914.01A	3	58351525	58410430	17	0.0701	NEUTRAL	NA	1	PXK
TCGA.AG.A01W.01A	3	58360010	58373612	6	-0.4451	NEUTRAL	NA	1	PXK
TCGA.AG.3906.01A	3	58376247	58417276	20	0.0783	NEUTRAL	NA	2	"PDHB,PXK"
TCGA.AG.A01W.01A	3	58385553	58494161	21	0.2239	NEUTRAL	NA	4	"ACOX2,KCTD6,PDHB,PXK"
TCGA.AG.A00H.01A	3	58398571	197765401	5682	0.0142	NEUTRAL	NA	608	Too-Many
TCGA.AG.4009.01A	3	58410430	58555409	26	-0.4604	NEUTRAL	NA	5	"ACOX2,FAM107A,KCTD6,PDHB,PXK"
TCGA.AA.A01Q.01A	3	58413753	58494593	11	-0.4627	NEUTRAL	NA	3	"ACOX2,KCTD6,PDHB"
TCGA.AA.A01C.01A	3	58484400	58510103	7	-0.1396	NEUTRAL	NA	2	"ACOX2,KCTD6"
TCGA.CK.5914.01A	3	58494593	58817385	29	0.362	NEUTRAL	NA	4	"ACOX2,C3orf67,FAM107A,FAM3D"
TCGA.AG.3611.01A	3	58494593	64587610	151	-0.0597	NEUTRAL	NA	16	"ACOX2,ADAMTS9,ATXN7,C3orf14,C3orf67,CADPS,FAM107A,FAM3D,FEZF2,FHIT,PRICKLE2,PSMD6,PTPRG,SNTN,SYNPR,THOC7"
TCGA.AG.A01W.01A	3	58494714	58616228	15	-0.2872	NEUTRAL	NA	2	"ACOX2,FAM107A"
TCGA.AA.A01Q.01A	3	58502882	58555409	15	0.2317	NEUTRAL	NA	2	"ACOX2,FAM107A"
TCGA.AA.A010.01A	3	58502882	62318913	75	0.0474	NEUTRAL	NA	7	"ACOX2,C3orf14,C3orf67,FAM107A,FAM3D,FHIT,PTPRG"
TCGA.AG.A00C.01A	3	58502882	63985089	136	-0.1863	NEUTRAL	NA	13	"ACOX2,ATXN7,C3orf14,C3orf67,CADPS,FAM107A,FAM3D,FEZF2,FHIT,PTPRG,SNTN,SYNPR,THOC7"
TCGA.AA.A01C.01A	3	58512153	127500584	2266	0.1181	NEUTRAL	NA	237	Too-Many
TCGA.AG.3909.01A	3	58519142	58631199	13	0.2238	NEUTRAL	NA	3	"ACOX2,FAM107A,FAM3D"
TCGA.AG.4009.01A	3	58619949	62318913	60	0.0755	NEUTRAL	NA	5	"C3orf14,C3orf67,FAM3D,FHIT,PTPRG"
TCGA.AG.3906.01A	3	58625780	59999694	22	-0.0632	NEUTRAL	NA	3	"C3orf67,FAM3D,FHIT"
TCGA.AG.A00Y.01A	3	58631199	121613303	1748	-0.0443	NEUTRAL	NA	184	Too-Many
TCGA.AA.A01Q.01A	3	58634955	105271265	663	0.0426	NEUTRAL	NA	100	"ABI3BP,ADAMTS9,ADGRG7,ALCAM,ARL13B,ARL6,ARL6IP5,ATXN7,C3orf14,C3orf38,C3orf67,CADM2,CADPS,CEP97,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FAM3D,FEZF2,FHIT,FILIP1L,FOXP1,FRG2C,FRMD4B,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,IMPG2,KBTBD8,LMOD3,LNP1,LRIG1,MAGI1,MINA,MITF,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,PTPRG,ROBO1,ROBO2,RPL24,RYBP,SENP7,SHQ1,SLC25A26,SNTN,ST3GAL6,STX19,SUCLG2,SYNPR,TBC1D23,TFG,THOC7,TMEM45A,TMF1,TOMM70A,TRMT10C,UBA3,VGLL3,ZBTB11,ZNF654,ZNF717,ZPLD1"
TCGA.AA.3941	3	58669567	58744140	10	-0.2911	NEUTRAL	NA	1	C3orf67
TCGA.AG.A01W.01A	3	58703179	72949022	372	0.1235	NEUTRAL	NA	34	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,C3orf67,CADPS,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.AA.A02H.01A	3	58728138	127295478	2174	0.1366	NEUTRAL	NA	230	Too-Many
TCGA.AA.3850	3	58789761	65681664	3486	-0.22395	NEUTRAL	NA	14	"ADAMTS9,ATXN7,C3orf14,C3orf67,CADPS,FEZF2,FHIT,MAGI1,PRICKLE2,PSMD6,PTPRG,SNTN,SYNPR,THOC7"
TCGA.AG.3909.01A	3	58792085	58870229	8	-0.2956	NEUTRAL	NA	1	C3orf67
TCGA.AA.3941	3	58798866	59917168	481	-0.0331	NEUTRAL	NA	2	"C3orf67,FHIT"
TCGA.AZ.4684.01A	3	58817385	62204493	27	0.326	NEUTRAL	NA	3	"C3orf67,FHIT,PTPRG"
TCGA.AG.3909.01A	3	58899387	62278796	37	0.3615	NEUTRAL	NA	3	"C3orf67,FHIT,PTPRG"
TCGA.AA.3811	3	58941772	60351560	835	-0.4411	NEUTRAL	NA	2	"C3orf67,FHIT"
TCGA.AA.3982	3	59000762	61311974	1379	-0.4869	NEUTRAL	NA	2	"C3orf67,FHIT"
TCGA.AA.3511	3	59692167	59781216	78	-0.3192	NEUTRAL	NA	1	FHIT
TCGA.G4.6320	3	59693839	61015133	928	-0.3917	NEUTRAL	NA	1	FHIT
TCGA.CM.4752	3	59776986	60002454	191	-0.3725	NEUTRAL	NA	1	FHIT
TCGA.AA.3667	3	59776986	60067395	271	0.3549	NEUTRAL	NA	1	FHIT
TCGA.AA.3511	3	59784508	197833757	38937	0.1558	NEUTRAL	NA	601	Too-Many
TCGA.AY.4070	3	59793061	60152187	340	-0.4175	NEUTRAL	NA	1	FHIT
TCGA.AH.6544	3	59793061	60335528	443	-0.2658	NEUTRAL	NA	1	FHIT
TCGA.AA.3977	3	59797583	120844985	17271	-0.0732	NEUTRAL	NA	174	Too-Many
TCGA.A6.6653	3	59839049	60288427	394	-0.1341	NEUTRAL	NA	1	FHIT
TCGA.DM.A28H	3	59892472	60421118	448	-0.0458	NEUTRAL	NA	1	FHIT
TCGA.D5.6930	3	59905246	59991005	96	-0.4747	NEUTRAL	NA	1	FHIT
TCGA.AA.3812	3	59917037	60012349	115	-0.469	NEUTRAL	NA	1	FHIT
TCGA.DM.A1DA	3	59921646	60103407	201	-0.2908	NEUTRAL	NA	1	FHIT
TCGA.AA.3941	3	59928850	60398155	383	-0.2821	NEUTRAL	NA	1	FHIT
TCGA.AA.3663	3	59937461	197833757	38850	-0.0055	NEUTRAL	NA	601	Too-Many
TCGA.AG.3583	3	59964545	197833757	38006	-0.2825	NEUTRAL	NA	601	Too-Many
TCGA.AG.3592	3	59970996	60012349	54	-0.1432	NEUTRAL	NA	1	FHIT
TCGA.SS.A7HO	3	59978196	60004907	39	-0.4025	NEUTRAL	NA	1	FHIT
TCGA.D5.6931	3	59978196	60039222	84	-0.4051	NEUTRAL	NA	1	FHIT
TCGA.CA.5254	3	59978485	60351560	304	0.2934	NEUTRAL	NA	1	FHIT
TCGA.D5.6930	3	59991607	197833757	38779	0.0087	NEUTRAL	NA	601	Too-Many
TCGA.AA.3848	3	60001413	60338005	265	-0.1291	NEUTRAL	NA	1	FHIT
TCGA.CM.4752	3	60003287	66637644	3212	0.0283	NEUTRAL	NA	15	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,FHIT,LRIG1,MAGI1,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SYNPR,THOC7"
TCGA.DM.A1D0	3	60004907	130957739	19806	0.0093	NEUTRAL	NA	267	Too-Many
TCGA.SS.A7HO	3	60006599	136120299	21587	0.0268	NEUTRAL	NA	295	Too-Many
TCGA.DM.A0XD	3	60009172	60042182	44	-0.0414	NEUTRAL	NA	1	FHIT
TCGA.D5.6533	3	60009807	60750061	538	-0.3	NEUTRAL	NA	1	FHIT
TCGA.AA.3812	3	60013044	60351560	256	-0.0937	NEUTRAL	NA	1	FHIT
TCGA.AG.3592	3	60013044	60770569	543	0.2886	NEUTRAL	NA	1	FHIT
TCGA.DC.6681	3	60013144	60067395	67	-0.3593	NEUTRAL	NA	1	FHIT
TCGA.AA.A01R	3	60024228	60236976	171	-0.0219	NEUTRAL	NA	1	FHIT
TCGA.A6.5659	3	60038631	197832936	35410	0.1206	NEUTRAL	NA	601	Too-Many
TCGA.AA.3715	3	60039010	60225511	148	-0.0516	NEUTRAL	NA	1	FHIT
TCGA.D5.6931	3	60039487	60226253	147	0.0073	NEUTRAL	NA	1	FHIT
TCGA.AH.6897	3	60051070	60141413	87	-0.5084	NEUTRAL	NA	1	FHIT
TCGA.DM.A0XD	3	60056523	60200022	106	-0.0047	NEUTRAL	NA	1	FHIT
TCGA.AA.3667	3	60073152	60103407	28	0.0138	NEUTRAL	NA	1	FHIT
TCGA.DC.6681	3	60073152	197833757	38697	0.1207	NEUTRAL	NA	601	Too-Many
TCGA.AA.3518	3	60076988	60248417	119	-0.2352	NEUTRAL	NA	1	FHIT
TCGA.D5.6929	3	60087316	60264381	127	-0.3834	NEUTRAL	NA	1	FHIT
TCGA.F4.6856	3	60089377	60303503	131	-0.4103	NEUTRAL	NA	1	FHIT
TCGA.AA.3949	3	60101852	60418720	215	-0.1034	NEUTRAL	NA	1	FHIT
TCGA.F4.6569	3	60102445	197833757	38738	0.0102	NEUTRAL	NA	601	Too-Many
TCGA.AZ.4614	3	60110528	60179458	56	0.0305	NEUTRAL	NA	1	FHIT
TCGA.AA.3492	3	60110528	103348209	11840	-0.0219	NEUTRAL	NA	97	"ABI3BP,ADAMTS9,ADGRG7,ARL13B,ARL6,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CEP97,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FEZF2,FHIT,FILIP1L,FOXP1,FRG2C,FRMD4B,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,IMPG2,KBTBD8,LMOD3,LNP1,LRIG1,MAGI1,MINA,MITF,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,PTPRG,ROBO1,ROBO2,RPL24,RYBP,SENP7,SHQ1,SLC25A26,SNTN,ST3GAL6,STX19,SUCLG2,SYNPR,TBC1D23,TFG,THOC7,TMEM45A,TMF1,TOMM70A,TRMT10C,UBA3,VGLL3,ZBTB11,ZNF654,ZNF717,ZPLD1"
TCGA.A6.5666	3	60121219	60311681	113	-0.0577	NEUTRAL	NA	1	FHIT
TCGA.AG.A026	3	60124387	60197484	37	-0.029	NEUTRAL	NA	1	FHIT
TCGA.AY.4070	3	60155858	197833757	38543	0.0316	NEUTRAL	NA	601	Too-Many
TCGA.CA.5255	3	60179458	60624814	314	-0.369	NEUTRAL	NA	1	FHIT
TCGA.CM.4743	3	60204762	60517562	232	-0.4896	NEUTRAL	NA	1	FHIT
TCGA.AG.A026	3	60212765	60284868	47	0.109	NEUTRAL	NA	1	FHIT
TCGA.AG.3898	3	60213881	60303503	46	-0.1678	NEUTRAL	NA	1	FHIT
TCGA.A6.2683	3	60214819	60441340	146	-0.2582	NEUTRAL	NA	1	FHIT
TCGA.CM.5861	3	60224010	60426591	135	-0.0147	NEUTRAL	NA	1	FHIT
TCGA.CM.5860	3	60225473	60250379	16	-0.486	NEUTRAL	NA	1	FHIT
TCGA.D5.6931	3	60227391	60349461	72	-0.3695	NEUTRAL	NA	1	FHIT
TCGA.AY.A8YK	3	60227591	60379863	92	-0.4092	NEUTRAL	NA	1	FHIT
TCGA.AA.A01V	3	60235255	197833757	38641	-0.0031	NEUTRAL	NA	601	Too-Many
TCGA.AA.A02O	3	60262616	60414406	106	-0.4754	NEUTRAL	NA	1	FHIT
TCGA.AZ.4315	3	60262616	60620283	270	0.0006	NEUTRAL	NA	1	FHIT
TCGA.D5.6532	3	60262616	60661990	291	0.004	NEUTRAL	NA	1	FHIT
TCGA.AA.3866	3	60262616	85591107	8633	-0.1168	NEUTRAL	NA	43	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADM2,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,ZNF717"
TCGA.AD.6964	3	60263720	60408403	97	-0.513	NEUTRAL	NA	1	FHIT
TCGA.DY.A0XA	3	60263927	197833757	38598	0.0379	NEUTRAL	NA	601	Too-Many
TCGA.CA.6717	3	60264265	60589337	240	-0.3474	NEUTRAL	NA	1	FHIT
TCGA.AD.6890	3	60278293	61045091	470	-0.0426	NEUTRAL	NA	1	FHIT
TCGA.AG.3881	3	60280254	60332000	39	-0.3397	NEUTRAL	NA	1	FHIT
TCGA.CK.5913	3	60280254	197833757	38573	0.0032	NEUTRAL	NA	601	Too-Many
TCGA.AF.A56K	3	60280742	60441340	108	-0.3164	NEUTRAL	NA	1	FHIT
TCGA.CA.5256	3	60284868	60410186	87	-0.3754	NEUTRAL	NA	1	FHIT
TCGA.AA.A01T	3	60290013	60344189	39	-0.3963	NEUTRAL	NA	1	FHIT
TCGA.F4.6856	3	60306890	197833757	38549	0	NEUTRAL	NA	601	Too-Many
TCGA.AH.6643	3	60309540	60574545	208	-0.3058	NEUTRAL	NA	1	FHIT
TCGA.A6.5666	3	60315036	60326347	15	-0.1697	NEUTRAL	NA	1	FHIT
TCGA.EI.6507	3	60316240	60367529	32	-0.5018	NEUTRAL	NA	1	FHIT
TCGA.AU.6004	3	60316240	60517562	158	-0.3516	NEUTRAL	NA	1	FHIT
TCGA.G4.6586	3	60321270	60445252	84	-0.4415	NEUTRAL	NA	1	FHIT
TCGA.AA.A02Y	3	60322860	125462328	18293	-0.0046	NEUTRAL	NA	213	Too-Many
TCGA.AZ.6601	3	60322947	60643044	236	-0.4424	NEUTRAL	NA	1	FHIT
TCGA.AA.A01R	3	60344189	60817247	317	-0.0663	NEUTRAL	NA	1	FHIT
TCGA.D5.6931	3	60350708	60380258	22	0.0587	NEUTRAL	NA	1	FHIT
TCGA.AD.6889	3	60351560	60412560	45	0.0295	NEUTRAL	NA	1	FHIT
TCGA.CA.5254	3	60359240	60414406	45	-0.475	NEUTRAL	NA	1	FHIT
TCGA.QG.A5YW	3	60364537	197833757	38321	0	NEUTRAL	NA	601	Too-Many
TCGA.EI.6507	3	60368381	174669099	31928	0.0152	NEUTRAL	NA	461	Too-Many
TCGA.A6.5666	3	60370636	174822838	31948	-0.011	NEUTRAL	NA	461	Too-Many
TCGA.CM.5860	3	60375315	60565902	153	-0.3219	NEUTRAL	NA	1	FHIT
TCGA.AG.3892	3	60375315	60586321	170	-0.4616	NEUTRAL	NA	1	FHIT
TCGA.G4.6310	3	60380258	60648131	203	-0.4675	NEUTRAL	NA	1	FHIT
TCGA.A6.4105	3	60382827	60643044	199	-0.2891	NEUTRAL	NA	1	FHIT
TCGA.D5.6931	3	60386781	60517562	115	-0.326	NEUTRAL	NA	1	FHIT
TCGA.AA.3869	3	60386864	197833757	38519	0.0165	NEUTRAL	NA	601	Too-Many
TCGA.AG.3728	3	60388321	129730718	19341	-0.0392	NEUTRAL	NA	260	Too-Many
TCGA.F4.6459	3	60397973	60616456	182	-0.3321	NEUTRAL	NA	1	FHIT
TCGA.AA.3811	3	60403657	65378478	2468	-0.428	NEUTRAL	NA	13	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,FHIT,MAGI1,PRICKLE2,PSMD6,PTPRG,SNTN,SYNPR,THOC7"
TCGA.AG.3881	3	60403657	89674139	9437	-0.3091	NEUTRAL	NA	51	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EOGT,EPHA3,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.NH.A6GB	3	60408346	197833757	38518	0	NEUTRAL	NA	601	Too-Many
TCGA.AG.3902	3	60410186	197833757	38433	-0.0059	NEUTRAL	NA	601	Too-Many
TCGA.AA.3941	3	60410705	60566491	126	-0.0258	NEUTRAL	NA	1	FHIT
TCGA.AG.3742	3	60410705	141646961	22684	-0.01	NEUTRAL	NA	330	Too-Many
TCGA.CA.5256	3	60410705	197833757	38263	-0.0508	NEUTRAL	NA	601	Too-Many
TCGA.D5.6929	3	60410705	197833757	38473	-0.0243	NEUTRAL	NA	601	Too-Many
TCGA.F5.6464	3	60414406	60545601	113	-0.3328	NEUTRAL	NA	1	FHIT
TCGA.AA.3543	3	60414406	60574720	131	0.0303	NEUTRAL	NA	1	FHIT
TCGA.NH.A50T	3	60417038	60597462	150	-0.0563	NEUTRAL	NA	1	FHIT
TCGA.AH.6897	3	60417129	60488693	59	-0.5141	NEUTRAL	NA	1	FHIT
TCGA.AA.A02O	3	60418531	60678025	186	-0.4695	NEUTRAL	NA	1	FHIT
TCGA.AG.3898	3	60421118	61114155	408	-0.1622	NEUTRAL	NA	1	FHIT
TCGA.AA.3848	3	60426591	197833757	38547	-0.0508	NEUTRAL	NA	601	Too-Many
TCGA.T9.A92H	3	60433223	143736373	23426	-0.282	NEUTRAL	NA	342	Too-Many
TCGA.AG.A02N	3	60433314	197833757	38487	-0.0064	NEUTRAL	NA	601	Too-Many
TCGA.G4.6299	3	60441340	61127303	415	-0.0166	NEUTRAL	NA	1	FHIT
TCGA.G4.6309	3	60448670	197833757	38430	0.006	NEUTRAL	NA	601	Too-Many
TCGA.G4.6294	3	60456744	60507810	57	-0.0432	NEUTRAL	NA	1	FHIT
TCGA.AD.5900	3	60456744	197833757	38448	0.0216	NEUTRAL	NA	601	Too-Many
TCGA.CA.5254	3	60456953	60487687	35	-0.4463	NEUTRAL	NA	1	FHIT
TCGA.AA.3715	3	60461993	197833757	38524	-0.0165	NEUTRAL	NA	601	Too-Many
TCGA.AG.A026	3	60464075	60540089	67	0.056	NEUTRAL	NA	1	FHIT
TCGA.D5.5538	3	60464274	197833757	38468	0.0174	NEUTRAL	NA	601	Too-Many
TCGA.DM.A0X9	3	60470010	60544478	67	-0.291	NEUTRAL	NA	1	FHIT
TCGA.D5.6540	3	60479379	197833757	38399	-0.0065	NEUTRAL	NA	601	Too-Many
TCGA.AA.3949	3	60486889	197833757	38465	-0.0219	NEUTRAL	NA	601	Too-Many
TCGA.AA.3812	3	60487013	197833757	38508	-0.0089	NEUTRAL	NA	601	Too-Many
TCGA.D5.6529	3	60487180	197833757	38482	-0.2239	NEUTRAL	NA	601	Too-Many
TCGA.AH.6897	3	60488757	197833757	38406	-0.0003	NEUTRAL	NA	601	Too-Many
TCGA.D5.6927	3	60491102	197833757	38409	0.0054	NEUTRAL	NA	601	Too-Many
TCGA.AF.A56K	3	60497967	60799234	192	-0.2341	NEUTRAL	NA	1	FHIT
TCGA.AA.3510	3	60498886	60512888	17	-0.4249	NEUTRAL	NA	1	FHIT
TCGA.QL.A97D	3	60498886	60527478	25	-0.4008	NEUTRAL	NA	1	FHIT
TCGA.D5.5540	3	60503107	99978561	10766	0.004	NEUTRAL	NA	79	"ADAMTS9,ARL13B,ARL6,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FEZF2,FHIT,FILIP1L,FOXP1,FRG2C,FRMD4B,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MINA,MITF,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,ST3GAL6,STX19,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AH.6544	3	60509609	60721777	139	-0.2747	NEUTRAL	NA	1	FHIT
TCGA.AA.3518	3	60512471	60616456	81	-0.0673	NEUTRAL	NA	1	FHIT
TCGA.AA.3867	3	60514661	60681991	105	-0.2134	NEUTRAL	NA	1	FHIT
TCGA.AF.5654	3	60514661	197833757	38367	-0.0028	NEUTRAL	NA	601	Too-Many
TCGA.DM.A28C	3	60516180	72580843	5159	0.0038	NEUTRAL	NA	31	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRMD4B,GPR27,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.D5.6535	3	60517562	60620283	74	0.3188	NEUTRAL	NA	1	FHIT
TCGA.AU.6004	3	60518503	60873982	198	0.0028	NEUTRAL	NA	1	FHIT
TCGA.AG.3883	3	60518503	197833757	38460	0	NEUTRAL	NA	601	Too-Many
TCGA.CM.4743	3	60518503	197833757	38435	0.0185	NEUTRAL	NA	601	Too-Many
TCGA.AY.A8YK	3	60521595	60719750	121	-0.4773	NEUTRAL	NA	1	FHIT
TCGA.A6.3810.01A	3	60522576	93813836	557	0.0203	NEUTRAL	NA	56	"ADAMTS9,ARL13B,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CNTN3,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,NSUN3,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,STX19,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AA.3821	3	60527478	197833757	38391	0.0123	NEUTRAL	NA	601	Too-Many
TCGA.AA.A01P	3	60527478	197833757	38407	0.0058	NEUTRAL	NA	601	Too-Many
TCGA.QL.A97D	3	60531241	77571638	6750	0.0183	NEUTRAL	NA	40	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,ZNF717"
TCGA.G4.6294	3	60531296	60591218	49	-0.0804	NEUTRAL	NA	1	FHIT
TCGA.D5.6931	3	60535730	60643044	78	-0.4823	NEUTRAL	NA	1	FHIT
TCGA.DM.A1HB	3	60535730	64191980	1657	-0.0009	NEUTRAL	NA	11	"ATXN7,C3orf14,CADPS,FEZF2,FHIT,PRICKLE2,PSMD6,PTPRG,SNTN,SYNPR,THOC7"
TCGA.A6.2683	3	60536419	60800698	163	-0.5117	NEUTRAL	NA	1	FHIT
TCGA.AA.3831	3	60536668	60787734	152	-0.1004	NEUTRAL	NA	1	FHIT
TCGA.DM.A28F	3	60537998	78825047	7025	-0.0316	NEUTRAL	NA	41	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,ZNF717"
TCGA.AG.A026	3	60543482	60711658	99	-0.4957	NEUTRAL	NA	1	FHIT
TCGA.DM.A0X9	3	60544636	61004645	246	0.0018	NEUTRAL	NA	1	FHIT
TCGA.AA.3510	3	60545362	60686771	84	-0.0583	NEUTRAL	NA	1	FHIT
TCGA.G5.6233	3	60545601	197833757	38432	-0.1032	NEUTRAL	NA	601	Too-Many
TCGA.F5.6464	3	60546243	197833757	38429	-0.0017	NEUTRAL	NA	601	Too-Many
TCGA.CA.5254	3	60554520	60557851	4	-0.441	NEUTRAL	NA	1	FHIT
TCGA.AD.6895	3	60555273	197833757	38367	0.0217	NEUTRAL	NA	601	Too-Many
TCGA.AA.3966	3	60557851	163994507	28854	-0.2025	NEUTRAL	NA	424	Too-Many
TCGA.AD.6889	3	60557851	197833757	38359	0.0261	NEUTRAL	NA	601	Too-Many
TCGA.G4.6293	3	60557851	197833757	38398	0.0206	NEUTRAL	NA	601	Too-Many
TCGA.CA.5254	3	60559046	197833757	38292	0.3129	NEUTRAL	NA	601	Too-Many
TCGA.CM.5860	3	60566491	197833757	38349	0	NEUTRAL	NA	601	Too-Many
TCGA.CM.6163	3	60569814	75415862	6129	-0.2565	NEUTRAL	NA	37	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.F4.6570	3	60572072	197833757	38404	0.0126	NEUTRAL	NA	601	Too-Many
TCGA.AA.3529	3	60579956	60647539	43	-0.0451	NEUTRAL	NA	1	FHIT
TCGA.AA.3941	3	60579956	60793399	125	-0.2952	NEUTRAL	NA	1	FHIT
TCGA.CM.5861	3	60580712	174646602	31706	0.0025	NEUTRAL	NA	461	Too-Many
TCGA.AG.3892	3	60586833	197833757	38286	0.0055	NEUTRAL	NA	601	Too-Many
TCGA.CA.6717	3	60589409	197833757	38213	0.0394	NEUTRAL	NA	601	Too-Many
TCGA.A6.6782	3	60589454	60735437	87	-0.0451	NEUTRAL	NA	1	FHIT
TCGA.DM.A1DB	3	60593141	197833757	38383	0.0087	NEUTRAL	NA	601	Too-Many
TCGA.AA.A01T	3	60596342	60721399	71	-0.2851	NEUTRAL	NA	1	FHIT
TCGA.A6.3809	3	60596342	129828077	17508	-0.0052	NEUTRAL	NA	261	Too-Many
TCGA.DY.A1DD	3	60608086	197833757	38376	0.0192	NEUTRAL	NA	601	Too-Many
TCGA.AG.3580	3	60615679	84679726	8172	-0.4461	NEUTRAL	NA	42	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,ZNF717"
TCGA.F4.6459	3	60620283	69533410	3897	-0.0157	NEUTRAL	NA	25	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FRMD4B,KBTBD8,LMOD3,LRIG1,MAGI1,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.D5.6535	3	60621083	60977516	176	-0.0461	NEUTRAL	NA	1	FHIT
TCGA.CA.5255	3	60625100	197833757	38240	0.0153	NEUTRAL	NA	601	Too-Many
TCGA.A6.6653	3	60636060	76424959	6278	-0.0105	NEUTRAL	NA	39	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,ZNF717"
TCGA.A6.6780	3	60643044	60770569	69	-0.1667	NEUTRAL	NA	1	FHIT
TCGA.AZ.6601	3	60647539	60771431	69	-0.0988	NEUTRAL	NA	1	FHIT
TCGA.AH.6643	3	60647539	75362748	6070	0.0132	NEUTRAL	NA	37	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.D5.6931	3	60647539	197833757	38269	0.0182	NEUTRAL	NA	601	Too-Many
TCGA.F5.6814	3	60648068	116099040	15033	-0.0604	NEUTRAL	NA	150	Too-Many
TCGA.G4.6310	3	60654168	164210970	28827	-0.0136	NEUTRAL	NA	424	Too-Many
TCGA.DM.A0XD	3	60660119	197833757	38211	0.006	NEUTRAL	NA	601	Too-Many
TCGA.AG.3599	3	60660178	174387441	31598	-0.0126	NEUTRAL	NA	460	Too-Many
TCGA.A6.4105	3	60661145	60829379	89	-0.354	NEUTRAL	NA	1	FHIT
TCGA.AA.3518	3	60661145	60932619	134	-0.0825	NEUTRAL	NA	1	FHIT
TCGA.AD.6964	3	60677501	197833757	38303	0.0258	NEUTRAL	NA	601	Too-Many
TCGA.AA.A02O	3	60681360	197833757	38337	0	NEUTRAL	NA	601	Too-Many
TCGA.AA.3867	3	60686771	74546100	5882	0.1393	NEUTRAL	NA	37	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.AA.3510	3	60689475	60808878	73	-0.5011	NEUTRAL	NA	1	FHIT
TCGA.AZ.6600	3	60691604	197833757	38324	-0.2378	NEUTRAL	NA	601	Too-Many
TCGA.AA.3845	3	60692291	197833757	38278	-0.0241	NEUTRAL	NA	601	Too-Many
TCGA.AY.5543	3	60708987	197833757	38020	0.0172	NEUTRAL	NA	601	Too-Many
TCGA.G4.6586	3	60712074	197833757	38337	0.0146	NEUTRAL	NA	601	Too-Many
TCGA.AD.6888	3	60716213	61052346	179	-0.293	NEUTRAL	NA	1	FHIT
TCGA.AA.3516	3	60719422	60908012	94	-0.0323	NEUTRAL	NA	1	FHIT
TCGA.AY.A8YK	3	60719947	197833757	38322	-0.0688	NEUTRAL	NA	601	Too-Many
TCGA.AD.6548	3	60720890	60780878	35	-0.0263	NEUTRAL	NA	1	FHIT
TCGA.AA.A01T	3	60721777	174709717	31672	0.1528	NEUTRAL	NA	461	Too-Many
TCGA.AZ.6607	3	60733894	107547253	12503	-0.1118	NEUTRAL	NA	101	Too-Many
TCGA.AG.3592	3	60771431	61080781	166	-0.1196	NEUTRAL	NA	1	FHIT
TCGA.AA.3685	3	60771431	61205837	227	-0.224	NEUTRAL	NA	1	FHIT
TCGA.DY.A1H8	3	60771431	197833757	38295	0.0018	NEUTRAL	NA	601	Too-Many
TCGA.AZ.6601	3	60771913	60796634	16	-0.468	NEUTRAL	NA	1	FHIT
TCGA.AD.6548	3	60787734	61189519	215	-0.4708	NEUTRAL	NA	1	FHIT
TCGA.F4.6460	3	60793399	116112809	14987	-0.2582	NEUTRAL	NA	150	Too-Many
TCGA.AZ.6601	3	60799234	197833757	38283	0.0056	NEUTRAL	NA	601	Too-Many
TCGA.EI.6917	3	60799234	197833757	38184	0.0257	NEUTRAL	NA	601	Too-Many
TCGA.AA.3831	3	60808824	60850180	12	-0.4065	NEUTRAL	NA	1	FHIT
TCGA.AA.3510	3	60812573	116729817	15223	-0.012	NEUTRAL	NA	150	Too-Many
TCGA.NH.A50T	3	60829379	174697958	31409	0.0366	NEUTRAL	NA	461	Too-Many
TCGA.A6.6780	3	60841564	60908012	34	-0.0245	NEUTRAL	NA	1	FHIT
TCGA.AA.3831	3	60852437	197833757	38234	-0.0019	NEUTRAL	NA	601	Too-Many
TCGA.AU.6004	3	60874076	60962283	44	-0.3848	NEUTRAL	NA	1	FHIT
TCGA.AA.A01R	3	60877991	60996219	57	0.0095	NEUTRAL	NA	1	FHIT
TCGA.AA.3941	3	60920017	60996219	41	-0.4614	NEUTRAL	NA	1	FHIT
TCGA.AA.3518	3	60933038	61207076	152	-0.4465	NEUTRAL	NA	1	FHIT
TCGA.AF.A56K	3	60944974	60977516	12	-0.1748	NEUTRAL	NA	1	FHIT
TCGA.AZ.4682	3	60944974	197833757	38198	0	NEUTRAL	NA	601	Too-Many
TCGA.A6.6138	3	60957449	61207076	140	-0.4695	NEUTRAL	NA	1	FHIT
TCGA.DM.A1HA	3	60962283	69844058	3863	0.0197	NEUTRAL	NA	26	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FRMD4B,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.AA.3543	3	60962283	197833757	38179	-0.0029	NEUTRAL	NA	601	Too-Many
TCGA.AU.6004	3	60972828	75393729	5891	0.0086	NEUTRAL	NA	37	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.AH.6544	3	60974087	65913775	2382	-0.2568	NEUTRAL	NA	13	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,FHIT,MAGI1,PRICKLE2,PSMD6,PTPRG,SNTN,SYNPR,THOC7"
TCGA.D5.6535	3	60978210	61920536	391	0.2734	NEUTRAL	NA	2	"FHIT,PTPRG"
TCGA.AF.A56K	3	60995599	61243610	134	-0.2568	NEUTRAL	NA	1	FHIT
TCGA.AA.3941	3	61000925	61080781	60	0.0867	NEUTRAL	NA	1	FHIT
TCGA.A6.6782	3	61012746	197832936	38018	0.1472	NEUTRAL	NA	601	Too-Many
TCGA.G4.6320	3	61016038	197833757	38180	0.0057	NEUTRAL	NA	601	Too-Many
TCGA.AG.A026	3	61021129	65188452	2012	0.0487	NEUTRAL	NA	12	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,FHIT,PRICKLE2,PSMD6,PTPRG,SNTN,SYNPR,THOC7"
TCGA.CI.6623	3	61026498	61114155	57	-0.2953	NEUTRAL	NA	1	FHIT
TCGA.D5.7000	3	61039483	197833757	38011	0.009	NEUTRAL	NA	601	Too-Many
TCGA.AZ.4315	3	61042787	174788420	31540	0.0074	NEUTRAL	NA	461	Too-Many
TCGA.AA.A01R	3	61043938	197833757	38155	0.0004	NEUTRAL	NA	601	Too-Many
TCGA.AD.6890	3	61045547	61136873	55	-0.3987	NEUTRAL	NA	1	FHIT
TCGA.DC.6158	3	61048580	61356249	135	-0.3255	NEUTRAL	NA	1	FHIT
TCGA.AA.3558	3	61051587	197833757	38155	-0.0009	NEUTRAL	NA	601	Too-Many
TCGA.AD.6888	3	61052498	129760621	18901	0.1453	NEUTRAL	NA	260	Too-Many
TCGA.AG.4008	3	61060612	61207076	72	-0.4974	NEUTRAL	NA	1	FHIT
TCGA.CA.6716	3	61061361	144157148	23094	-0.283	NEUTRAL	NA	342	Too-Many
TCGA.A6.2683	3	61074228	61944114	336	-0.3537	NEUTRAL	NA	2	"FHIT,PTPRG"
TCGA.AM.5821	3	61074228	197833757	38028	-0.0236	NEUTRAL	NA	601	Too-Many
TCGA.DC.4745	3	61075153	61205837	64	-0.1397	NEUTRAL	NA	1	FHIT
TCGA.AA.A022	3	61080781	197833757	38072	0	NEUTRAL	NA	601	Too-Many
TCGA.A6.4105	3	61097009	197833757	38128	-0.2654	NEUTRAL	NA	601	Too-Many
TCGA.AA.3529	3	61097009	197833757	38116	0.0023	NEUTRAL	NA	601	Too-Many
TCGA.D5.6532	3	61100048	132844373	19821	0.005	NEUTRAL	NA	277	Too-Many
TCGA.AA.3941	3	61106243	61403415	113	-0.1139	NEUTRAL	NA	1	FHIT
TCGA.AZ.4616	3	61106320	197833757	38004	-0.0547	NEUTRAL	NA	601	Too-Many
TCGA.EI.6513	3	61109361	197833757	38131	0.0104	NEUTRAL	NA	601	Too-Many
TCGA.CI.6623	3	61115119	110072759	13024	0.0373	NEUTRAL	NA	113	Too-Many
TCGA.AA.3516	3	61115892	197833757	38065	-0.0077	NEUTRAL	NA	601	Too-Many
TCGA.AG.3592	3	61118796	61234831	53	-0.2839	NEUTRAL	NA	1	FHIT
TCGA.AG.3898	3	61118796	61583076	173	-0.0188	NEUTRAL	NA	2	"FHIT,PTPRG"
TCGA.AA.3984	3	61122317	197833757	38052	0.0096	NEUTRAL	NA	601	Too-Many
TCGA.AA.3872	3	61136873	184530770	33979	-0.042	NEUTRAL	NA	512	Too-Many
TCGA.CM.6677	3	61136873	197833757	37915	-0.1837	NEUTRAL	NA	601	Too-Many
TCGA.AD.6890	3	61136893	197833757	38059	0.0094	NEUTRAL	NA	601	Too-Many
TCGA.AG.4015	3	61139644	197833757	37994	0.0151	NEUTRAL	NA	601	Too-Many
TCGA.AG.3882	3	61171056	197833757	38093	-0.014	NEUTRAL	NA	601	Too-Many
TCGA.5M.AAT4	3	61171278	72721671	4867	-0.3089	NEUTRAL	NA	31	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRMD4B,GPR27,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.CM.6171	3	61184320	197833757	38068	0.0204	NEUTRAL	NA	601	Too-Many
TCGA.AA.3488	3	61190181	93543005	9002	-0.4978	NEUTRAL	NA	51	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EOGT,EPHA3,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AD.6548	3	61190181	174370817	31208	0.0086	NEUTRAL	NA	460	Too-Many
TCGA.A6.6780	3	61205837	100312801	10406	-0.0222	NEUTRAL	NA	84	"ADAMTS9,ARL13B,ARL6,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FEZF2,FHIT,FILIP1L,FOXP1,FRG2C,FRMD4B,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LNP1,LRIG1,MAGI1,MINA,MITF,NIT2,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,ST3GAL6,STX19,SUCLG2,SYNPR,TBC1D23,THOC7,TMEM45A,TMF1,TOMM70A,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.DM.A0X9	3	61205837	197833757	38055	0.0091	NEUTRAL	NA	601	Too-Many
TCGA.EI.6512	3	61205837	197833757	38068	0.0153	NEUTRAL	NA	601	Too-Many
TCGA.AA.3685	3	61207076	65188452	1904	0.1658	NEUTRAL	NA	12	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,FHIT,PRICKLE2,PSMD6,PTPRG,SNTN,SYNPR,THOC7"
TCGA.DC.4745	3	61207076	174975813	31537	0.3625	NEUTRAL	NA	461	Too-Many
TCGA.AF.A56N	3	61220808	192563914	36750	0.0195	NEUTRAL	NA	555	Too-Many
TCGA.A6.6138	3	61220808	197833757	38070	0.0148	NEUTRAL	NA	601	Too-Many
TCGA.AA.3518	3	61220808	197833757	38015	0.0002	NEUTRAL	NA	601	Too-Many
TCGA.AG.4008	3	61220808	197833757	37825	0.0024	NEUTRAL	NA	601	Too-Many
TCGA.CA.5797	3	61222554	93543005	8991	-0.412	NEUTRAL	NA	51	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EOGT,EPHA3,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.DC.6682	3	61238217	62100260	383	-0.4252	NEUTRAL	NA	1	PTPRG
TCGA.AG.3592	3	61238217	174956761	31523	0.3409	NEUTRAL	NA	460	Too-Many
TCGA.A6.3807	3	61239209	86783524	8283	-0.3965	NEUTRAL	NA	42	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADM2,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,ZNF717"
TCGA.AF.A56K	3	61252468	197833757	37936	0.0172	NEUTRAL	NA	600	Too-Many
TCGA.DM.A28H	3	61273563	174986158	31460	0.0072	NEUTRAL	NA	460	Too-Many
TCGA.G4.6299	3	61277744	197833757	38043	0	NEUTRAL	NA	600	Too-Many
TCGA.D5.6533	3	61281828	66740281	2437	-0.2334	NEUTRAL	NA	14	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,LRIG1,MAGI1,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SYNPR,THOC7"
TCGA.AA.3982	3	61318720	63075266	789	-0.1651	NEUTRAL	NA	4	"C3orf14,CADPS,FEZF2,PTPRG"
TCGA.DC.6158	3	61357677	75415862	5745	-0.0026	NEUTRAL	NA	36	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.EI.6508	3	61363011	71483306	4233	0.0641	NEUTRAL	NA	26	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,EOGT,FAM19A1,FAM19A4,FEZF2,FOXP1,FRMD4B,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.D5.6531	3	61366106	75415862	5753	0.0296	NEUTRAL	NA	36	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.AA.3941	3	61403662	62032615	278	0.239	NEUTRAL	NA	1	PTPRG
TCGA.AZ.4308	3	61455418	103350439	11095	0.0064	NEUTRAL	NA	96	"ABI3BP,ADAMTS9,ADGRG7,ARL13B,ARL6,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CEP97,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FEZF2,FILIP1L,FOXP1,FRG2C,FRMD4B,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,IMPG2,KBTBD8,LMOD3,LNP1,LRIG1,MAGI1,MINA,MITF,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,PTPRG,ROBO1,ROBO2,RPL24,RYBP,SENP7,SHQ1,SLC25A26,SNTN,ST3GAL6,STX19,SUCLG2,SYNPR,TBC1D23,TFG,THOC7,TMEM45A,TMF1,TOMM70A,TRMT10C,UBA3,VGLL3,ZBTB11,ZNF654,ZNF717,ZPLD1"
TCGA.AA.A02W.01A	3	61547908	67049353	188	-0.4821	NEUTRAL	NA	15	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,KBTBD8,LRIG1,MAGI1,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SYNPR,THOC7"
TCGA.AG.3898	3	61583133	61771354	90	-0.308	NEUTRAL	NA	1	PTPRG
TCGA.CI.6621	3	61768085	197833757	37789	-0.0219	NEUTRAL	NA	600	Too-Many
TCGA.AG.3898	3	61774075	197792875	37723	0	NEUTRAL	NA	600	Too-Many
TCGA.D5.6535	3	61928157	62012686	63	-0.3307	NEUTRAL	NA	1	PTPRG
TCGA.A6.2683	3	61944576	197833757	37762	0.0455	NEUTRAL	NA	600	Too-Many
TCGA.AA.A02K.01A	3	61975259	127381022	2448	-0.1255	NEUTRAL	NA	230	Too-Many
TCGA.D5.6535	3	62013653	175143340	31270	0.2774	NEUTRAL	NA	460	Too-Many
TCGA.AA.3941	3	62034678	65681664	1786	-0.1125	NEUTRAL	NA	12	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,MAGI1,PRICKLE2,PSMD6,PTPRG,SNTN,SYNPR,THOC7"
TCGA.DC.6682	3	62106478	70482548	3526	-0.1401	NEUTRAL	NA	25	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,EOGT,FAM19A1,FAM19A4,FEZF2,FRMD4B,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.CM.5344	3	62114427	197833757	37654	0.1042	NEUTRAL	NA	600	Too-Many
TCGA.DM.A28M.01A	3	62278074	123667488	1967	-0.0037	NEUTRAL	NA	202	Too-Many
TCGA.AG.3906.01A	3	62306077	97167370	512	-0.0628	NEUTRAL	NA	55	"ADAMTS9,ARL13B,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CNTN3,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FEZF2,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,NSUN3,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,STX19,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AZ.4684.01A	3	62355730	73112790	324	0.0998	NEUTRAL	NA	32	"ADAMTS9,ARL6IP5,ATXN7,CADPS,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PPP4R2,PRICKLE2,PROK2,PSMD6,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.CK.5914.01A	3	62357730	62484787	15	0.32	NEUTRAL	NA	2	"CADPS,FEZF2"
TCGA.AG.4009.01A	3	62357730	69036552	179	0.0128	NEUTRAL	NA	17	"ADAMTS9,ATXN7,CADPS,EOGT,FAM19A1,FAM19A4,FEZF2,KBTBD8,LRIG1,MAGI1,PRICKLE2,PSMD6,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7"
TCGA.AF.3914.01A	3	62357730	101540201	816	0.0032	NEUTRAL	NA	92	"ABI3BP,ADAMTS9,ADGRG7,ARL13B,ARL6,ARL6IP5,ATXN7,C3orf38,CADM2,CADPS,CEP97,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FEZF2,FILIP1L,FOXP1,FRG2C,FRMD4B,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,IMPG2,KBTBD8,LMOD3,LNP1,LRIG1,MAGI1,MINA,MITF,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,ROBO1,ROBO2,RPL24,RYBP,SENP7,SHQ1,SLC25A26,SNTN,ST3GAL6,STX19,SUCLG2,SYNPR,TBC1D23,TFG,THOC7,TMEM45A,TMF1,TOMM70A,TRMT10C,UBA3,VGLL3,ZBTB11,ZNF654,ZNF717"
TCGA.AA.3930.01A	3	62388705	78696696	395	-0.0272	NEUTRAL	NA	37	"ADAMTS9,ARL6IP5,ATXN7,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FOXP1,FRG2C,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,ZNF717"
TCGA.AA.A010.01A	3	62423731	63649562	39	0.0586	NEUTRAL	NA	3	"CADPS,SNTN,SYNPR"
TCGA.AA.3664	3	62534164	82975101	7087	0.3764	NEUTRAL	NA	38	"ADAMTS9,ARL6IP5,ATXN7,CADPS,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PRICKLE2,PROK2,PSMD6,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,ZNF717"
TCGA.DM.A1DA	3	62805406	197833757	37336	-0.1372	NEUTRAL	NA	597	Too-Many
TCGA.CK.5914.01A	3	62860215	63985089	30	0.2699	NEUTRAL	NA	5	"ATXN7,CADPS,SNTN,SYNPR,THOC7"
TCGA.AA.3982	3	63078241	64750504	820	0.126	NEUTRAL	NA	7	"ADAMTS9,ATXN7,PRICKLE2,PSMD6,SNTN,SYNPR,THOC7"
TCGA.A6.6648	3	63094235	65188452	1067	0.0514	NEUTRAL	NA	7	"ADAMTS9,ATXN7,PRICKLE2,PSMD6,SNTN,SYNPR,THOC7"
TCGA.AF.2693	3	63097176	65188452	1065	-0.0121	NEUTRAL	NA	7	"ADAMTS9,ATXN7,PRICKLE2,PSMD6,SNTN,SYNPR,THOC7"
TCGA.AA.3696	3	63112119	197833757	37241	0	NEUTRAL	NA	596	Too-Many
TCGA.AA.A00N.01A	3	63640357	63898780	11	-0.198	NEUTRAL	NA	3	"ATXN7,SNTN,THOC7"
TCGA.AA.A00Q.01A	3	63973693	63981741	5	0.3086	NEUTRAL	NA	1	ATXN7
TCGA.AA.A00Q.01A	3	63996296	107940930	601	-0.4178	NEUTRAL	NA	94	"ABI3BP,ADAMTS9,ADGRG7,ALCAM,ARL13B,ARL6,ARL6IP5,BBX,C3orf38,CADM2,CBLB,CCDC54,CD47,CEP97,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FILIP1L,FOXP1,FRG2C,FRMD4B,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,IFT57,IMPG2,KBTBD8,LMOD3,LNP1,LRIG1,MAGI1,MINA,MITF,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PROS1,PSMD6,ROBO1,ROBO2,RPL24,RYBP,SENP7,SHQ1,SLC25A26,ST3GAL6,STX19,SUCLG2,TBC1D23,TFG,TMEM45A,TMF1,TOMM70A,TRMT10C,UBA3,VGLL3,ZBTB11,ZNF654,ZNF717,ZPLD1"
TCGA.AA.A00F.01A	3	64008961	64636646	35	-0.0837	NEUTRAL	NA	3	"ADAMTS9,PRICKLE2,PSMD6"
TCGA.AG.A00C.01A	3	64008961	64644151	38	-0.2916	NEUTRAL	NA	3	"ADAMTS9,PRICKLE2,PSMD6"
TCGA.AA.A010.01A	3	64184412	64672225	31	0.1385	NEUTRAL	NA	2	"ADAMTS9,PRICKLE2"
TCGA.DM.A1HB	3	64256269	133697763	18412	-0.0162	NEUTRAL	NA	274	Too-Many
TCGA.AG.3611.01A	3	64589571	65387053	32	-0.3396	NEUTRAL	NA	2	"ADAMTS9,MAGI1"
TCGA.AA.3982	3	64756157	65010836	133	0.0107	NEUTRAL	NA	0	None
TCGA.AA.3982	3	65027412	65142712	73	0.1548	NEUTRAL	NA	0	None
TCGA.AA.3982	3	65156286	65658851	237	0.0656	NEUTRAL	NA	1	MAGI1
TCGA.AG.3726	3	65216560	66007547	394	-0.0455	NEUTRAL	NA	1	MAGI1
TCGA.AF.2693	3	65216560	68069730	1127	0.0196	NEUTRAL	NA	6	"FAM19A1,KBTBD8,LRIG1,MAGI1,SLC25A26,SUCLG2"
TCGA.A6.6648	3	65216560	75393729	3897	0.0099	NEUTRAL	NA	25	"ARL6IP5,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1,SLC25A26,SUCLG2,TMF1,UBA3"
TCGA.AA.3685	3	65216560	123065777	15029	0.1995	NEUTRAL	NA	188	Too-Many
TCGA.AG.A026	3	65216560	174898956	29576	0.0519	NEUTRAL	NA	449	Too-Many
TCGA.AA.A00F.01A	3	65376780	66512796	39	0.0195	NEUTRAL	NA	3	"LRIG1,MAGI1,SLC25A26"
TCGA.AG.A00C.01A	3	65376780	69050712	68	-0.168	NEUTRAL	NA	8	"EOGT,FAM19A1,FAM19A4,KBTBD8,LRIG1,MAGI1,SLC25A26,SUCLG2"
TCGA.AA.3811	3	65379293	66899600	585	-0.0804	NEUTRAL	NA	3	"LRIG1,MAGI1,SLC25A26"
TCGA.AA.A010.01A	3	65387053	66023671	13	-0.3077	NEUTRAL	NA	1	MAGI1
TCGA.AG.3611.01A	3	65415253	72881473	120	-0.0319	NEUTRAL	NA	20	"ARL6IP5,EIF4E3,EOGT,FAM19A1,FAM19A4,FOXP1,FRMD4B,GPR27,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PROK2,RYBP,SHQ1,SLC25A26,SUCLG2,TMF1,UBA3"
TCGA.AG.3581	3	65575010	129828077	16770	0.0063	NEUTRAL	NA	249	Too-Many
TCGA.AA.3982	3	65659179	66952549	481	0.3436	NEUTRAL	NA	3	"LRIG1,MAGI1,SLC25A26"
TCGA.AA.3850	3	65685804	66729079	349	0.23205	NEUTRAL	NA	3	"LRIG1,MAGI1,SLC25A26"
TCGA.AA.3941	3	65685804	66952549	475	0.2607	NEUTRAL	NA	3	"LRIG1,MAGI1,SLC25A26"
TCGA.AH.6544	3	65921984	90283950	6735	-0.266	NEUTRAL	NA	39	"ARL6IP5,C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EOGT,EPHA3,FAM19A1,FAM19A4,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,POU1F1,PPP4R2,PROK2,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SUCLG2,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AD.6899	3	66300153	197833757	35657	0.1875	NEUTRAL	NA	588	Too-Many
TCGA.AA.A00L.01A	3	66413221	97664016	259	-0.5121	NEUTRAL	NA	47	"ARL13B,ARL6,ARL6IP5,C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,CRYBG3,DHFRL1,EBLN2,EIF4E3,EOGT,EPHA3,EPHA6,FAM19A1,FAM19A4,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MINA,MITF,NSUN3,PDZRN3,POU1F1,PPP4R2,PROK2,PROS1,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,STX19,SUCLG2,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.A6.3808.01A	3	66433399	77526548	221	-0.0913	NEUTRAL	NA	26	"ARL6IP5,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FOXP1,FRG2C,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MITF,PDZRN3,PPP4R2,PROK2,ROBO2,RYBP,SHQ1,SUCLG2,TMF1,UBA3,ZNF717"
TCGA.CK.5914.01A	3	66448491	67058414	14	-0.3301	NEUTRAL	NA	2	"KBTBD8,LRIG1"
TCGA.AA.A00D.01A	3	66465312	69050712	20	-0.4959	NEUTRAL	NA	6	"EOGT,FAM19A1,FAM19A4,KBTBD8,LRIG1,SUCLG2"
TCGA.CM.4752	3	66647781	69524317	1152	0.3371	NEUTRAL	NA	10	"ARL6IP5,EOGT,FAM19A1,FAM19A4,FRMD4B,KBTBD8,LMOD3,SUCLG2,TMF1,UBA3"
TCGA.AA.3850	3	66737220	66877689	89	0.26535	NEUTRAL	NA	0	None
TCGA.D5.6533	3	66744336	77647933	3901	-0.2731	NEUTRAL	NA	25	"ARL6IP5,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FOXP1,FRG2C,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,MITF,PDZRN3,PPP4R2,PROK2,ROBO2,RYBP,SHQ1,SUCLG2,TMF1,UBA3,ZNF717"
TCGA.AA.3850	3	66881241	68924058	782	-0.46195	NEUTRAL	NA	4	"FAM19A1,FAM19A4,KBTBD8,SUCLG2"
TCGA.AA.3811	3	66900391	71224586	1597	-0.3915	NEUTRAL	NA	12	"ARL6IP5,EOGT,FAM19A1,FAM19A4,FOXP1,FRMD4B,KBTBD8,LMOD3,MITF,SUCLG2,TMF1,UBA3"
TCGA.AA.3982	3	66954470	68600487	642	-0.0692	NEUTRAL	NA	3	"FAM19A1,KBTBD8,SUCLG2"
TCGA.AA.3941	3	66954470	68925251	748	-0.3968	NEUTRAL	NA	4	"FAM19A1,FAM19A4,KBTBD8,SUCLG2"
TCGA.AA.A02W.01A	3	67053572	122849279	1673	0.0238	NEUTRAL	NA	183	Too-Many
TCGA.AA.A010.01A	3	67058414	68593545	15	0.1266	NEUTRAL	NA	3	"FAM19A1,KBTBD8,SUCLG2"
TCGA.AG.3909.01A	3	67426127	69036552	24	0.3769	NEUTRAL	NA	4	"EOGT,FAM19A1,FAM19A4,SUCLG2"
TCGA.AF.2693	3	68535068	197833757	34865	0.0216	NEUTRAL	NA	584	Too-Many
TCGA.A6.2686	3	68537070	89789358	5758	-0.0542	NEUTRAL	NA	34	"ARL6IP5,C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EOGT,EPHA3,FAM19A1,FAM19A4,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,LMOD3,MITF,PDZRN3,POU1F1,PPP4R2,PROK2,ROBO1,ROBO2,RYBP,SHQ1,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AA.3982	3	68621442	68708558	18	-0.0574	NEUTRAL	NA	0	None
TCGA.AA.3864	3	68621442	197833757	34713	-0.0421	NEUTRAL	NA	583	Too-Many
TCGA.AA.3982	3	68715717	68840981	43	-0.1982	NEUTRAL	NA	1	FAM19A4
TCGA.AA.A00F.01A	3	68782199	69031893	9	0.045	NEUTRAL	NA	2	"EOGT,FAM19A4"
TCGA.AA.A010.01A	3	68782199	69092852	30	-0.5096	NEUTRAL	NA	3	"EOGT,FAM19A4,TMF1"
TCGA.AA.3982	3	68851207	69516192	266	0.3012	NEUTRAL	NA	7	"ARL6IP5,EOGT,FAM19A4,FRMD4B,LMOD3,TMF1,UBA3"
TCGA.AA.3850	3	68925251	69513946	229	0.18255	NEUTRAL	NA	7	"ARL6IP5,EOGT,FAM19A4,FRMD4B,LMOD3,TMF1,UBA3"
TCGA.AA.3941	3	68925777	69253317	117	0.1549	NEUTRAL	NA	7	"ARL6IP5,EOGT,FAM19A4,FRMD4B,LMOD3,TMF1,UBA3"
TCGA.AA.A00O.01A	3	69036552	77671361	190	-0.4445	NEUTRAL	NA	21	"ARL6IP5,CNTN3,EBLN2,EIF4E3,EOGT,FOXP1,FRG2C,FRMD4B,GPR27,GXYLT2,LMOD3,MITF,PDZRN3,PPP4R2,PROK2,ROBO2,RYBP,SHQ1,TMF1,UBA3,ZNF717"
TCGA.AA.A00D.01A	3	69053482	69928234	27	-0.1235	NEUTRAL	NA	7	"ARL6IP5,EOGT,FRMD4B,LMOD3,MITF,TMF1,UBA3"
TCGA.AG.A00C.01A	3	69072279	69111191	22	0.0112	NEUTRAL	NA	2	"TMF1,UBA3"
TCGA.AG.3909.01A	3	69077055	69106338	16	0.0615	NEUTRAL	NA	2	"TMF1,UBA3"
TCGA.CK.5914.01A	3	69077055	69126911	25	-0.4198	NEUTRAL	NA	2	"TMF1,UBA3"
TCGA.AG.4009.01A	3	69077055	71803161	88	-0.0391	NEUTRAL	NA	8	"ARL6IP5,EIF4E3,FOXP1,FRMD4B,LMOD3,MITF,TMF1,UBA3"
TCGA.AA.A00N.01A	3	69078947	69106338	14	0.1061	NEUTRAL	NA	2	"TMF1,UBA3"
TCGA.AG.3909.01A	3	69110943	69158179	14	-0.4311	NEUTRAL	NA	3	"ARL6IP5,LMOD3,UBA3"
TCGA.AA.A00F.01A	3	69129216	71803161	39	-0.0198	NEUTRAL	NA	7	"ARL6IP5,EIF4E3,FOXP1,FRMD4B,LMOD3,MITF,UBA3"
TCGA.CK.5914.01A	3	69129216	73440122	108	-0.0146	NEUTRAL	NA	15	"ARL6IP5,EBLN2,EIF4E3,FOXP1,FRMD4B,GPR27,GXYLT2,LMOD3,MITF,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1,UBA3"
TCGA.AG.A00C.01A	3	69134162	71748726	64	-0.1848	NEUTRAL	NA	6	"ARL6IP5,EIF4E3,FOXP1,FRMD4B,LMOD3,MITF"
TCGA.AG.3909.01A	3	69167822	88040268	227	0.2403	NEUTRAL	NA	24	"CADM2,CHMP2B,CNTN3,EBLN2,EIF4E3,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,LMOD3,MITF,PDZRN3,POU1F1,PPP4R2,PROK2,ROBO1,ROBO2,RYBP,SHQ1,VGLL3,ZNF717"
TCGA.AA.3941	3	69447938	69516192	25	0.1178	NEUTRAL	NA	0	None
TCGA.AA.3850	3	69516192	70069906	207	-0.16665	NEUTRAL	NA	1	MITF
TCGA.AA.3941	3	69516523	71126412	558	-0.3425	NEUTRAL	NA	2	"FOXP1,MITF"
TCGA.AA.3982	3	69523978	69596207	36	0.2139	NEUTRAL	NA	0	None
TCGA.CM.4752	3	69533291	100353808	6849	-0.1958	NEUTRAL	NA	60	"ADGRG7,ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EPHA3,EPHA6,FILIP1L,FOXP1,FRG2C,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,LNP1,MINA,MITF,NIT2,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PDZRN3,POU1F1,PPP4R2,PROK2,PROS1,ROBO1,ROBO2,RYBP,SHQ1,ST3GAL6,STX19,TBC1D23,TMEM45A,TOMM70A,VGLL3,ZNF654,ZNF717"
TCGA.AA.3982	3	69602584	70670497	348	-0.0077	NEUTRAL	NA	1	MITF
TCGA.DC.6682	3	70502046	90283950	5075	-0.4659	NEUTRAL	NA	25	"C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EPHA3,FOXP1,FRG2C,GBE1,GPR27,GXYLT2,HTR1F,PDZRN3,POU1F1,PPP4R2,PROK2,ROBO1,ROBO2,RYBP,SHQ1,VGLL3,ZNF654,ZNF717"
TCGA.AA.3982	3	70673152	70766718	30	-0.2129	NEUTRAL	NA	0	None
TCGA.AA.3982	3	70782073	70827467	22	0.1765	NEUTRAL	NA	0	None
TCGA.AA.3982	3	70854697	73629967	1152	0.3026	NEUTRAL	NA	10	"EBLN2,EIF4E3,FOXP1,GPR27,GXYLT2,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1"
TCGA.AA.3850	3	70955291	73629967	1111	0.18785	NEUTRAL	NA	10	"EBLN2,EIF4E3,FOXP1,GPR27,GXYLT2,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1"
TCGA.AA.A00N.01A	3	71015003	71745545	20	0.127	NEUTRAL	NA	2	"EIF4E3,FOXP1"
TCGA.5M.AATA	3	71112559	71475571	143	-0.4632	NEUTRAL	NA	1	FOXP1
TCGA.AA.3941	3	71128027	73620179	1049	0.2689	NEUTRAL	NA	10	"EBLN2,EIF4E3,FOXP1,GPR27,GXYLT2,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1"
TCGA.AA.3811	3	71224629	73560464	993	-0.0742	NEUTRAL	NA	10	"EBLN2,EIF4E3,FOXP1,GPR27,GXYLT2,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1"
TCGA.5M.AATA	3	71476824	149624225	20349	0.0293	NEUTRAL	NA	337	Too-Many
TCGA.DM.A1HA	3	71496007	73462821	840	0.004	NEUTRAL	NA	10	"EBLN2,EIF4E3,FOXP1,GPR27,GXYLT2,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1"
TCGA.EI.6508	3	71531169	143956429	18738	0.0641	NEUTRAL	NA	316	Too-Many
TCGA.F4.6459	3	71599570	75865730	1526	-0.0241	NEUTRAL	NA	13	"CNTN3,EBLN2,EIF4E3,FOXP1,FRG2C,GPR27,GXYLT2,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1,ZNF717"
TCGA.AG.A00C.01A	3	71803161	73047187	24	0.2734	NEUTRAL	NA	7	"EIF4E3,GPR27,GXYLT2,PPP4R2,PROK2,RYBP,SHQ1"
TCGA.AA.A00F.01A	3	71821823	73657696	35	0.3167	NEUTRAL	NA	7	"EBLN2,GXYLT2,PDZRN3,PPP4R2,PROK2,RYBP,SHQ1"
TCGA.AG.4009.01A	3	72427489	98250826	303	-0.0566	NEUTRAL	NA	43	"ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CLDND1,CNTN3,CRYBG3,DHFRL1,EBLN2,EPHA3,EPHA6,FRG2C,GABRR3,GBE1,GPR15,GXYLT2,HTR1F,MINA,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PDZRN3,POU1F1,PPP4R2,PROS1,ROBO1,ROBO2,RYBP,SHQ1,STX19,VGLL3,ZNF654,ZNF717"
TCGA.DM.A28C	3	72586120	174701884	26593	0.0248	NEUTRAL	NA	430	Too-Many
TCGA.5M.AAT4	3	72729754	77742902	1567	-0.3254	NEUTRAL	NA	9	"CNTN3,EBLN2,FRG2C,GXYLT2,PDZRN3,PPP4R2,ROBO2,SHQ1,ZNF717"
TCGA.AG.3611.01A	3	72890149	73114498	13	0.3536	NEUTRAL	NA	4	"EBLN2,GXYLT2,PPP4R2,SHQ1"
TCGA.AG.A01W.01A	3	72956244	73106780	12	-0.3164	NEUTRAL	NA	2	"GXYLT2,PPP4R2"
TCGA.AG.A00C.01A	3	73096430	98216508	272	-0.2033	NEUTRAL	NA	37	"ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,CRYBG3,DHFRL1,EBLN2,EPHA3,EPHA6,FRG2C,GABRR3,GBE1,HTR1F,MINA,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K3,OR5K4,PDZRN3,POU1F1,PPP4R2,PROS1,ROBO1,ROBO2,STX19,VGLL3,ZNF654,ZNF717"
TCGA.AG.A01W.01A	3	73128860	79721617	109	0.2714	NEUTRAL	NA	6	"CNTN3,FRG2C,PDZRN3,ROBO1,ROBO2,ZNF717"
TCGA.AM.5820	3	73242175	85050849	2961	-0.0153	NEUTRAL	NA	8	"CADM2,CNTN3,FRG2C,GBE1,PDZRN3,ROBO1,ROBO2,ZNF717"
TCGA.AG.3611.01A	3	73432489	97673188	132	-0.0522	NEUTRAL	NA	25	"ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,CRYBG3,DHFRL1,EPHA3,EPHA6,FRG2C,GBE1,HTR1F,MINA,NSUN3,PDZRN3,POU1F1,PROS1,ROBO1,ROBO2,STX19,VGLL3,ZNF654,ZNF717"
TCGA.AA.A01K.01A	3	73434802	183755802	4291	0.1431	NEUTRAL	NA	457	Too-Many
TCGA.CK.5914.01A	3	73450015	87313389	128	0.3651	NEUTRAL	NA	11	"CADM2,CHMP2B,CNTN3,FRG2C,GBE1,PDZRN3,POU1F1,ROBO1,ROBO2,VGLL3,ZNF717"
TCGA.AA.A010.01A	3	73453312	77637883	46	-0.2463	NEUTRAL	NA	5	"CNTN3,FRG2C,PDZRN3,ROBO2,ZNF717"
TCGA.AA.3811	3	73560525	73653772	39	-0.3472	NEUTRAL	NA	1	PDZRN3
TCGA.DM.A1HA	3	73616432	174422841	26168	0.0367	NEUTRAL	NA	425	Too-Many
TCGA.AA.3941	3	73621000	79092831	1544	-0.5136	NEUTRAL	NA	6	"CNTN3,FRG2C,PDZRN3,ROBO1,ROBO2,ZNF717"
TCGA.AA.3850	3	73633326	73926642	168	-0.27305	NEUTRAL	NA	1	PDZRN3
TCGA.AA.3982	3	73633326	118695318	10523	-0.3503	NEUTRAL	NA	116	Too-Many
TCGA.NH.A8F8	3	74309643	197833757	32557	0.0109	NEUTRAL	NA	565	Too-Many
TCGA.AA.A00F.01A	3	74313505	101292991	284	-0.0688	NEUTRAL	NA	54	"ABI3BP,ADGRG7,ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EPHA3,EPHA6,FILIP1L,FRG2C,GABRR3,GBE1,GPR15,HTR1F,IMPG2,LNP1,MINA,NIT2,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,POU1F1,PROS1,ROBO1,ROBO2,SENP7,ST3GAL6,STX19,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,VGLL3,ZNF654,ZNF717"
TCGA.AA.3867	3	74552903	120793567	10725	-0.0164	NEUTRAL	NA	138	Too-Many
TCGA.A6.6648	3	75396817	75545171	16	-0.4548	NEUTRAL	NA	0	None
TCGA.A6.6648	3	75586270	83237519	1824	0.0136	NEUTRAL	NA	5	"FRG2C,GBE1,ROBO1,ROBO2,ZNF717"
TCGA.CM.6163	3	75586270	128266037	12711	0.0013	NEUTRAL	NA	202	Too-Many
TCGA.AY.6197	3	75586270	197833757	31534	-0.0025	NEUTRAL	NA	564	Too-Many
TCGA.AU.6004	3	75726924	125452840	11831	0.0512	NEUTRAL	NA	175	Too-Many
TCGA.EI.6885	3	75726924	129760621	12998	0.0496	NEUTRAL	NA	222	Too-Many
TCGA.AA.3952	3	75726924	157070815	20884	0.022	NEUTRAL	NA	362	Too-Many
TCGA.AF.2692	3	75726924	197833757	32250	0.0454	NEUTRAL	NA	563	Too-Many
TCGA.AG.3725	3	75726924	197833757	32211	0.2218	NEUTRAL	NA	563	Too-Many
TCGA.D5.6531	3	75726924	197833757	32227	0.045	NEUTRAL	NA	563	Too-Many
TCGA.DC.6158	3	75726924	197833757	32152	-0.0018	NEUTRAL	NA	563	Too-Many
TCGA.AH.6643	3	75875904	103787425	5457	0.0254	NEUTRAL	NA	58	"ABI3BP,ADGRG7,ARL13B,ARL6,C3orf38,CADM2,CEP97,CGGBP1,CHMP2B,CLDND1,CMSS1,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EPHA3,EPHA6,FILIP1L,GABRR3,GBE1,GPR15,HTR1F,IMPG2,LNP1,MINA,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,POU1F1,PROS1,ROBO1,ROBO2,RPL24,SENP7,ST3GAL6,STX19,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,VGLL3,ZBTB11,ZNF654,ZPLD1"
TCGA.A6.6653	3	76424974	76544170	54	-0.4011	NEUTRAL	NA	0	None
TCGA.A6.6653	3	76545467	128290207	12553	0.0009	NEUTRAL	NA	200	Too-Many
TCGA.QL.A97D	3	77596133	86975071	1988	-0.0062	NEUTRAL	NA	4	"CADM2,GBE1,ROBO1,ROBO2"
TCGA.AA.A00O.01A	3	77684029	93615369	106	0.0712	NEUTRAL	NA	13	"C3orf38,CADM2,CGGBP1,CHMP2B,EPHA3,GBE1,HTR1F,POU1F1,PROS1,ROBO1,ROBO2,VGLL3,ZNF654"
TCGA.5M.AAT4	3	77744328	90283950	2577	-0.3788	NEUTRAL	NA	11	"C3orf38,CADM2,CGGBP1,CHMP2B,EPHA3,GBE1,HTR1F,POU1F1,ROBO1,VGLL3,ZNF654"
TCGA.AA.A010.01A	3	78666816	97499416	150	0.1385	NEUTRAL	NA	18	"ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,DHFRL1,EPHA3,EPHA6,GBE1,HTR1F,NSUN3,POU1F1,PROS1,ROBO1,STX19,VGLL3,ZNF654"
TCGA.AA.3930.01A	3	79174550	130346092	2156	0.0274	NEUTRAL	NA	223	Too-Many
TCGA.G4.6322	3	79357388	151329525	18396	0.0217	NEUTRAL	NA	338	Too-Many
TCGA.D5.6533	3	79586303	197833757	31138	-0.2458	NEUTRAL	NA	561	Too-Many
TCGA.AG.3732	3	79814916	197833757	31128	-0.0681	NEUTRAL	NA	561	Too-Many
TCGA.EI.7002	3	79827059	90109206	2131	0.3555	NEUTRAL	NA	10	"C3orf38,CADM2,CGGBP1,CHMP2B,EPHA3,GBE1,HTR1F,POU1F1,VGLL3,ZNF654"
TCGA.G4.6303	3	81129276	197833757	30916	0.1333	NEUTRAL	NA	560	Too-Many
TCGA.AG.A01W.01A	3	81622186	81837240	15	-0.1835	NEUTRAL	NA	1	GBE1
TCGA.AG.A01W.01A	3	81893170	89604255	53	0.3229	NEUTRAL	NA	9	"C3orf38,CADM2,CGGBP1,CHMP2B,EPHA3,HTR1F,POU1F1,VGLL3,ZNF654"
TCGA.AG.3598	3	82440258	95183628	1857	0.0265	NEUTRAL	NA	14	"ARL13B,C3orf38,CADM2,CGGBP1,CHMP2B,DHFRL1,EPHA3,HTR1F,NSUN3,POU1F1,PROS1,STX19,VGLL3,ZNF654"
TCGA.AY.6196	3	82650906	82663231	5	-0.1786	NEUTRAL	NA	0	None
TCGA.AA.3664	3	82976734	96892173	2015	-0.0374	NEUTRAL	NA	15	"ARL13B,C3orf38,CADM2,CGGBP1,CHMP2B,DHFRL1,EPHA3,EPHA6,HTR1F,NSUN3,POU1F1,PROS1,STX19,VGLL3,ZNF654"
TCGA.CL.4957	3	83237519	85071584	322	-0.4061	NEUTRAL	NA	1	CADM2
TCGA.A6.6648	3	83252059	83893816	77	-0.2551	NEUTRAL	NA	0	None
TCGA.BM.6198	3	83424777	124965927	10016	-0.08675	NEUTRAL	NA	169	Too-Many
TCGA.A6.6648	3	83901673	195478860	29920	0.005	NEUTRAL	NA	531	Too-Many
TCGA.A6.6651	3	84055216	197833757	30172	0.2213	NEUTRAL	NA	559	Too-Many
TCGA.AG.3580	3	84688247	197833757	30206	0.0042	NEUTRAL	NA	559	Too-Many
TCGA.CL.4957	3	85072583	95735869	1436	0.0073	NEUTRAL	NA	14	"ARL13B,C3orf38,CADM2,CGGBP1,CHMP2B,DHFRL1,EPHA3,HTR1F,NSUN3,POU1F1,PROS1,STX19,VGLL3,ZNF654"
TCGA.AA.3866	3	85594168	197833757	29985	0.3492	NEUTRAL	NA	559	Too-Many
TCGA.F4.6459	3	85718169	146287607	15612	-0.0097	NEUTRAL	NA	304	Too-Many
TCGA.AG.3584	3	85820180	85874475	21	0.3159	NEUTRAL	NA	1	CADM2
TCGA.AG.3584	3	86073976	86105339	6	0.1012	NEUTRAL	NA	1	CADM2
TCGA.A6.6650	3	86714838	197833757	27104	0.344	NEUTRAL	NA	558	Too-Many
TCGA.D5.6922	3	86756855	89270518	572	-0.2825	NEUTRAL	NA	8	"C3orf38,CGGBP1,CHMP2B,EPHA3,HTR1F,POU1F1,VGLL3,ZNF654"
TCGA.A6.3807	3	86790148	174682022	22969	-0.0002	NEUTRAL	NA	418	Too-Many
TCGA.AF.3913	3	86850617	88427250	361	0.3672	NEUTRAL	NA	7	"C3orf38,CGGBP1,CHMP2B,HTR1F,POU1F1,VGLL3,ZNF654"
TCGA.QL.A97D	3	86977467	197833757	29685	0.2594	NEUTRAL	NA	558	Too-Many
TCGA.CM.4750.01A	3	87276602	195505632	5226	0.0751	NEUTRAL	NA	529	Too-Many
TCGA.AA.3967.01A	3	87309027	164704874	3544	-0.276	NEUTRAL	NA	380	Too-Many
TCGA.CK.5914.01A	3	87322470	89444960	17	-0.3536	NEUTRAL	NA	6	"C3orf38,CGGBP1,EPHA3,HTR1F,POU1F1,ZNF654"
TCGA.AF.2691	3	87386351	197833757	29591	0.0318	NEUTRAL	NA	555	Too-Many
TCGA.AY.6196	3	87892445	101211486	2090	0.1356	NEUTRAL	NA	43	"ABI3BP,ADGRG7,ARL13B,ARL6,C3orf38,CGGBP1,CLDND1,CMSS1,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EPHA3,EPHA6,FILIP1L,GABRR3,GPR15,HTR1F,IMPG2,LNP1,MINA,NIT2,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PROS1,SENP7,ST3GAL6,STX19,TBC1D23,TFG,TMEM45A,TOMM70A,ZNF654"
TCGA.DM.A28F	3	88364950	197833757	29309	0.0441	NEUTRAL	NA	551	Too-Many
TCGA.AF.3913	3	88431460	89484267	229	-0.0501	NEUTRAL	NA	1	EPHA3
TCGA.AG.3909.01A	3	89156851	93617242	25	0.2192	NEUTRAL	NA	2	"EPHA3,PROS1"
TCGA.DY.A1DC	3	89174151	90283950	127	-0.016	NEUTRAL	NA	1	EPHA3
TCGA.D5.6922	3	89270604	197833757	29112	0.0156	NEUTRAL	NA	551	Too-Many
TCGA.CK.5914.01A	3	89521575	93647497	16	-0.5018	NEUTRAL	NA	2	"EPHA3,PROS1"
TCGA.AA.3532	3	89536545	197833757	29122	0.247	NEUTRAL	NA	550	Too-Many
TCGA.AF.3913	3	89581407	89983402	42	-0.1351	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	3	89611225	95327719	33	-0.0264	NEUTRAL	NA	5	"ARL13B,DHFRL1,NSUN3,PROS1,STX19"
TCGA.AG.3881	3	89678598	129760621	9894	0.0451	NEUTRAL	NA	209	Too-Many
TCGA.A6.2686	3	89791943	197833757	29071	0.2357	NEUTRAL	NA	550	Too-Many
TCGA.AF.3913	3	90005371	96579087	591	0.2694	NEUTRAL	NA	6	"ARL13B,DHFRL1,EPHA6,NSUN3,PROS1,STX19"
TCGA.AA.3712	3	90023318	169366535	20772	0.0084	NEUTRAL	NA	383	Too-Many
TCGA.AF.3911	3	90056379	197833757	29080	0.3356	NEUTRAL	NA	550	Too-Many
TCGA.EI.7002	3	90114001	93543005	8	0.128	NEUTRAL	NA	0	None
TCGA.AA.3860	3	90283950	116493005	5944	0.0122	NEUTRAL	NA	99	"ABHD10,ABI3BP,ADGRG7,ALCAM,ARL13B,ARL6,ATG3,ATP6V1A,BBX,BOC,BTLA,C3orf17,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CEP97,CFAP44,CLDND1,CMSS1,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,DPPA2,DPPA4,DRD3,DZIP3,EPHA6,FILIP1L,GABRR3,GAP43,GCSAM,GPR15,GRAMD1C,GTPBP8,GUCA1C,HHLA2,IFT57,IMPG2,KIAA1407,KIAA1524,KIAA2018,LNP1,LSAMP,MINA,MORC1,MYH15,NAA50,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PHLDB2,PLCXD2,PROS1,PVRL3,QTRTD1,RETNLB,RPL24,SENP7,SIDT1,SLC35A5,SLC9C1,SPICE1,ST3GAL6,STX19,TAGLN3,TBC1D23,TFG,TIGIT,TMEM45A,TMPRSS7,TOMM70A,TRAT1,TRMT10C,ZBED2,ZBTB11,ZBTB20,ZDHHC23,ZNF80,ZPLD1"
TCGA.5M.AAT4	3	93543005	126724368	9122	0.1204	NEUTRAL	NA	176	Too-Many
TCGA.AA.3666	3	93543005	129828077	9847	0.3564	NEUTRAL	NA	210	Too-Many
TCGA.CM.6675	3	93543005	157365320	17768	0.1661	NEUTRAL	NA	351	Too-Many
TCGA.DC.6682	3	93543005	174634509	22373	0.0923	NEUTRAL	NA	410	Too-Many
TCGA.AA.3877	3	93543005	197833757	29043	0.0014	NEUTRAL	NA	550	Too-Many
TCGA.AG.3885	3	93543005	197833757	29071	0.2928	NEUTRAL	NA	550	Too-Many
TCGA.AH.6544	3	93543005	197833757	29017	0.0403	NEUTRAL	NA	550	Too-Many
TCGA.EI.7002	3	93548478	96705656	582	-0.4345	NEUTRAL	NA	6	"ARL13B,DHFRL1,EPHA6,NSUN3,PROS1,STX19"
TCGA.CA.5797	3	93548478	139459270	12519	0.0308	NEUTRAL	NA	269	Too-Many
TCGA.AA.3488	3	93548478	157727845	17923	-0.02	NEUTRAL	NA	351	Too-Many
TCGA.AG.3584	3	93575647	197833757	29058	0.042	NEUTRAL	NA	550	Too-Many
TCGA.AA.A00N.01A	3	93615369	93733201	13	-0.4148	NEUTRAL	NA	2	"ARL13B,PROS1"
TCGA.AA.A00O.01A	3	93617242	105243126	354	-0.4049	NEUTRAL	NA	47	"ABI3BP,ADGRG7,ALCAM,ARL13B,ARL6,CEP97,CLDND1,CMSS1,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EPHA6,FILIP1L,GABRR3,GPR15,IMPG2,LNP1,MINA,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PROS1,RPL24,SENP7,ST3GAL6,STX19,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11,ZPLD1"
TCGA.AA.3862.01A	3	93642996	160130130	3557	0.2486	NEUTRAL	NA	365	Too-Many
TCGA.AM.5820	3	93650507	197833757	29023	0.0037	NEUTRAL	NA	550	Too-Many
TCGA.AG.3909.01A	3	93692459	93733201	5	0.272	NEUTRAL	NA	2	"ARL13B,PROS1"
TCGA.CK.5914.01A	3	93692459	93733201	5	0.1508	NEUTRAL	NA	2	"ARL13B,PROS1"
TCGA.AA.3861.01A	3	93699201	197896676	5362	0.0222	NEUTRAL	NA	550	Too-Many
TCGA.AG.3909.01A	3	93772017	98216508	84	0.2214	NEUTRAL	NA	17	"ARL13B,ARL6,CRYBG3,DHFRL1,EPHA6,GABRR3,MINA,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K3,OR5K4"
TCGA.CK.5914.01A	3	93802924	97167370	11	0.1727	NEUTRAL	NA	2	"EPHA6,NSUN3"
TCGA.A6.3810.01A	3	93845008	126676242	1716	0.3432	NEUTRAL	NA	171	Too-Many
TCGA.AU.3779	3	95045969	197833757	28797	0.0605	NEUTRAL	NA	545	Too-Many
TCGA.CL.4957	3	95745700	96059232	69	-0.4967	NEUTRAL	NA	0	None
TCGA.CL.4957	3	96063460	138193243	11750	0.0075	NEUTRAL	NA	251	Too-Many
TCGA.CM.5341	3	96334533	197833757	28539	0	NEUTRAL	NA	545	Too-Many
TCGA.AG.A008.01A	3	96706126	112719670	703	0.0697	NEUTRAL	NA	76	"ABHD10,ABI3BP,ADGRG7,ALCAM,ARL6,ATG3,BBX,BTLA,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CEP97,CLDND1,CMSS1,COL8A1,CPOX,CRYBG3,DCBLD2,DPPA2,DPPA4,DZIP3,EPHA6,FILIP1L,GABRR3,GCSAM,GPR15,GTPBP8,GUCA1C,HHLA2,IFT57,IMPG2,KIAA1524,LNP1,MINA,MORC1,MYH15,NFKBIZ,NIT2,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PHLDB2,PLCXD2,PVRL3,RETNLB,RPL24,SENP7,SLC35A5,SLC9C1,ST3GAL6,TAGLN3,TBC1D23,TFG,TMEM45A,TMPRSS7,TOMM70A,TRAT1,TRMT10C,ZBED2,ZBTB11,ZPLD1"
TCGA.A6.5667	3	97046578	197833757	28399	0.1357	NEUTRAL	NA	545	Too-Many
TCGA.CK.5914.01A	3	97251154	97634403	29	0.1854	NEUTRAL	NA	3	"ARL6,CRYBG3,EPHA6"
TCGA.AG.3906.01A	3	97251154	113649514	814	-0.017	NEUTRAL	NA	85	"ABHD10,ABI3BP,ADGRG7,ALCAM,ARL6,ATG3,ATP6V1A,BBX,BOC,BTLA,C3orf17,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CEP97,CFAP44,CLDND1,CMSS1,COL8A1,CPOX,CRYBG3,DCBLD2,DPPA2,DPPA4,DZIP3,EPHA6,FILIP1L,GABRR3,GCSAM,GPR15,GRAMD1C,GTPBP8,GUCA1C,HHLA2,IFT57,IMPG2,KIAA1524,KIAA2018,LNP1,MINA,MORC1,MYH15,NAA50,NFKBIZ,NIT2,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PHLDB2,PLCXD2,PVRL3,RETNLB,RPL24,SENP7,SIDT1,SLC35A5,SLC9C1,SPICE1,ST3GAL6,TAGLN3,TBC1D23,TFG,TMEM45A,TMPRSS7,TOMM70A,TRAT1,TRMT10C,ZBED2,ZBTB11,ZPLD1"
TCGA.EI.7002	3	97339648	116026364	5060	-0.4375	NEUTRAL	NA	94	"ABHD10,ABI3BP,ADGRG7,ALCAM,ARL6,ATG3,ATP6V1A,BBX,BOC,BTLA,C3orf17,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CEP97,CFAP44,CLDND1,CMSS1,COL8A1,CPOX,CRYBG3,DCBLD2,DPPA2,DPPA4,DRD3,DZIP3,EPHA6,FILIP1L,GABRR3,GAP43,GCSAM,GPR15,GRAMD1C,GTPBP8,GUCA1C,HHLA2,IFT57,IMPG2,KIAA1407,KIAA1524,KIAA2018,LNP1,LSAMP,MINA,MORC1,MYH15,NAA50,NFKBIZ,NIT2,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PHLDB2,PLCXD2,PVRL3,QTRTD1,RETNLB,RPL24,SENP7,SIDT1,SLC35A5,SLC9C1,SPICE1,ST3GAL6,TAGLN3,TBC1D23,TFG,TIGIT,TMEM45A,TMPRSS7,TOMM70A,TRAT1,TRMT10C,ZBED2,ZBTB11,ZBTB20,ZDHHC23,ZNF80,ZPLD1"
TCGA.AA.A010.01A	3	97503802	97753699	40	-0.4972	NEUTRAL	NA	4	"ARL6,CRYBG3,GABRR3,MINA"
TCGA.AA.A00N.01A	3	97652488	97727744	19	-0.01	NEUTRAL	NA	3	"CRYBG3,GABRR3,MINA"
TCGA.AG.3611.01A	3	97677845	97711646	4	-0.45	NEUTRAL	NA	2	"GABRR3,MINA"
TCGA.CK.5914.01A	3	97680381	98216508	24	0.2325	NEUTRAL	NA	11	"GABRR3,MINA,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K3,OR5K4"
TCGA.AA.A010.01A	3	97806000	98518227	36	0.2576	NEUTRAL	NA	15	"CLDND1,CPOX,DCBLD2,GPR15,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,ST3GAL6"
TCGA.AG.3611.01A	3	97806000	108279444	282	0.1583	NEUTRAL	NA	45	"ABI3BP,ADGRG7,ALCAM,BBX,CBLB,CCDC54,CD47,CEP97,CLDND1,CMSS1,COL8A1,CPOX,DCBLD2,FILIP1L,GPR15,HHLA2,IFT57,IMPG2,KIAA1524,LNP1,MYH15,NFKBIZ,NIT2,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,RPL24,SENP7,ST3GAL6,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11,ZPLD1"
TCGA.AG.A01W.01A	3	98016108	99792500	91	0.3028	NEUTRAL	NA	12	"CLDND1,CMSS1,COL8A1,CPOX,DCBLD2,FILIP1L,GPR15,OR5K1,OR5K2,OR5K3,OR5K4,ST3GAL6"
TCGA.AA.3509.01A	3	98072661	100498915	140	0.173	NEUTRAL	NA	20	"ABI3BP,ADGRG7,CLDND1,CMSS1,COL8A1,CPOX,DCBLD2,FILIP1L,GPR15,LNP1,NIT2,OR5K1,OR5K2,OR5K3,OR5K4,ST3GAL6,TBC1D23,TFG,TMEM45A,TOMM70A"
TCGA.AA.3664	3	98133556	173140681	21017	-0.0023	NEUTRAL	NA	391	Too-Many
TCGA.AG.A00C.01A	3	98235461	98309809	13	0.3408	NEUTRAL	NA	3	"CLDND1,CPOX,GPR15"
TCGA.AZ.4684.01A	3	98240432	100498915	132	0.1912	NEUTRAL	NA	16	"ABI3BP,ADGRG7,CLDND1,CMSS1,COL8A1,CPOX,DCBLD2,FILIP1L,GPR15,LNP1,NIT2,ST3GAL6,TBC1D23,TFG,TMEM45A,TOMM70A"
TCGA.AG.4009.01A	3	98311776	98520369	12	0.0536	NEUTRAL	NA	3	"CPOX,DCBLD2,ST3GAL6"
TCGA.AG.A00C.01A	3	98311776	100029245	54	-0.1271	NEUTRAL	NA	7	"CMSS1,COL8A1,CPOX,DCBLD2,FILIP1L,ST3GAL6,TBC1D23"
TCGA.AG.3909.01A	3	98487233	100034901	54	0.3321	NEUTRAL	NA	6	"CMSS1,COL8A1,DCBLD2,FILIP1L,ST3GAL6,TBC1D23"
TCGA.CK.5914.01A	3	98487233	100447506	106	0.0661	NEUTRAL	NA	12	"ADGRG7,CMSS1,COL8A1,DCBLD2,FILIP1L,LNP1,NIT2,ST3GAL6,TBC1D23,TFG,TMEM45A,TOMM70A"
TCGA.AA.A00L.01A	3	98503757	100053539	40	-0.3515	NEUTRAL	NA	6	"CMSS1,COL8A1,DCBLD2,FILIP1L,ST3GAL6,TBC1D23"
TCGA.AG.4009.01A	3	98600355	100029245	32	0.033	NEUTRAL	NA	5	"CMSS1,COL8A1,DCBLD2,FILIP1L,TBC1D23"
TCGA.A6.3808.01A	3	98600355	100494014	99	0.1855	NEUTRAL	NA	12	"ABI3BP,ADGRG7,CMSS1,COL8A1,DCBLD2,FILIP1L,LNP1,NIT2,TBC1D23,TFG,TMEM45A,TOMM70A"
TCGA.AA.A010.01A	3	98600355	101212676	165	-0.0686	NEUTRAL	NA	14	"ABI3BP,ADGRG7,CMSS1,COL8A1,DCBLD2,FILIP1L,IMPG2,LNP1,NIT2,SENP7,TBC1D23,TFG,TMEM45A,TOMM70A"
TCGA.AA.3844	3	99329403	102014256	623	-0.1738	NEUTRAL	NA	20	"ABI3BP,ADGRG7,CEP97,CMSS1,COL8A1,FILIP1L,IMPG2,LNP1,NFKBIZ,NIT2,NXPE3,PCNP,RPL24,SENP7,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11"
TCGA.AA.3941	3	99333891	101973746	618	-0.1119	NEUTRAL	NA	20	"ABI3BP,ADGRG7,CEP97,CMSS1,COL8A1,FILIP1L,IMPG2,LNP1,NFKBIZ,NIT2,NXPE3,PCNP,RPL24,SENP7,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11"
TCGA.CK.6748	3	99364269	197833757	27760	0.0153	NEUTRAL	NA	525	Too-Many
TCGA.AG.A01W.01A	3	99794432	101462489	44	0.051	NEUTRAL	NA	17	"ABI3BP,ADGRG7,CEP97,CMSS1,FILIP1L,IMPG2,LNP1,NIT2,PCNP,RPL24,SENP7,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11"
TCGA.AG.4009.01A	3	100034901	100073555	12	-0.5006	NEUTRAL	NA	2	"NIT2,TBC1D23"
TCGA.AG.3909.01A	3	100037906	100064377	7	-0.4944	NEUTRAL	NA	2	"NIT2,TBC1D23"
TCGA.DY.A1DG	3	100042848	115301989	4145	-0.4601	NEUTRAL	NA	69	"ABHD10,ABI3BP,ADGRG7,ALCAM,ATG3,ATP6V1A,BBX,BOC,BTLA,C3orf17,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CEP97,CFAP44,DPPA2,DPPA4,DRD3,DZIP3,GCSAM,GRAMD1C,GTPBP8,GUCA1C,HHLA2,IFT57,IMPG2,KIAA1407,KIAA1524,KIAA2018,LNP1,MORC1,MYH15,NAA50,NFKBIZ,NIT2,NXPE3,PCNP,PHLDB2,PLCXD2,PVRL3,QTRTD1,RETNLB,RPL24,SENP7,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TBC1D23,TFG,TIGIT,TMEM45A,TMPRSS7,TOMM70A,TRAT1,TRMT10C,ZBED2,ZBTB11,ZBTB20,ZDHHC23,ZNF80,ZPLD1"
TCGA.AG.3909.01A	3	100064965	100084359	6	-0.0555	NEUTRAL	NA	2	"NIT2,TOMM70A"
TCGA.AG.A00C.01A	3	100071217	101136390	118	-0.1661	NEUTRAL	NA	9	"ABI3BP,ADGRG7,IMPG2,LNP1,NIT2,SENP7,TFG,TMEM45A,TOMM70A"
TCGA.AG.4009.01A	3	100073975	101540201	156	0.0553	NEUTRAL	NA	15	"ABI3BP,ADGRG7,CEP97,IMPG2,LNP1,NIT2,NXPE3,PCNP,RPL24,SENP7,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11"
TCGA.AG.3909.01A	3	100086840	100096522	6	0.2762	NEUTRAL	NA	1	TOMM70A
TCGA.AG.3909.01A	3	100100412	100119430	5	-0.1846	NEUTRAL	NA	1	TOMM70A
TCGA.CM.4752	3	100354169	104892983	1147	0.0833	NEUTRAL	NA	13	"ABI3BP,ADGRG7,CEP97,IMPG2,NFKBIZ,NXPE3,PCNP,RPL24,SENP7,TFG,TRMT10C,ZBTB11,ZPLD1"
TCGA.A6.6780	3	100448182	175282932	21147	-0.0021	NEUTRAL	NA	376	Too-Many
TCGA.D5.6534	3	100455138	197833757	27529	-0.0745	NEUTRAL	NA	516	Too-Many
TCGA.AA.3509.01A	3	100566395	101010242	32	0.2423	NEUTRAL	NA	2	"ABI3BP,IMPG2"
TCGA.AZ.4684.01A	3	100566395	102189188	110	0.2383	NEUTRAL	NA	11	"ABI3BP,CEP97,IMPG2,NFKBIZ,NXPE3,PCNP,RPL24,SENP7,TRMT10C,ZBTB11,ZPLD1"
TCGA.CK.5914.01A	3	100972486	100995476	7	-0.1401	NEUTRAL	NA	1	IMPG2
TCGA.AA.3509.01A	3	101049118	102195769	73	0.0498	NEUTRAL	NA	9	"CEP97,NFKBIZ,NXPE3,PCNP,RPL24,SENP7,TRMT10C,ZBTB11,ZPLD1"
TCGA.CK.5914.01A	3	101117678	101231858	6	-0.0849	NEUTRAL	NA	1	SENP7
TCGA.AG.3909.01A	3	101136390	101578092	49	-0.2453	NEUTRAL	NA	8	"CEP97,NFKBIZ,NXPE3,PCNP,RPL24,SENP7,TRMT10C,ZBTB11"
TCGA.AG.A00C.01A	3	101177752	101383342	16	0.1906	NEUTRAL	NA	4	"PCNP,SENP7,TRMT10C,ZBTB11"
TCGA.AA.A00L.01A	3	101212676	101483691	36	-0.2619	NEUTRAL	NA	6	"CEP97,PCNP,RPL24,SENP7,TRMT10C,ZBTB11"
TCGA.AA.A00F.01A	3	101298596	101578092	43	0.1752	NEUTRAL	NA	6	"CEP97,NFKBIZ,NXPE3,PCNP,RPL24,ZBTB11"
TCGA.AG.A00C.01A	3	101405292	101578092	24	0.0851	NEUTRAL	NA	4	"CEP97,NFKBIZ,NXPE3,RPL24"
TCGA.AA.A010.01A	3	101474272	105243126	31	0.2917	NEUTRAL	NA	5	"ALCAM,CEP97,NFKBIZ,NXPE3,ZPLD1"
TCGA.AG.A01W.01A	3	101497660	102505634	117	0.104	NEUTRAL	NA	3	"NFKBIZ,NXPE3,ZPLD1"
TCGA.AA.A02E.01A	3	101570907	102171741	10	-0.4578	NEUTRAL	NA	2	"NFKBIZ,ZPLD1"
TCGA.D5.5540	3	102142691	103749020	400	0.0425	NEUTRAL	NA	1	ZPLD1
TCGA.AG.4009.01A	3	102153879	107777131	64	0.0129	NEUTRAL	NA	6	"ALCAM,BBX,CBLB,CCDC54,CD47,ZPLD1"
TCGA.CK.5914.01A	3	102153879	108081177	88	0.2135	NEUTRAL	NA	8	"ALCAM,BBX,CBLB,CCDC54,CD47,HHLA2,IFT57,ZPLD1"
TCGA.AG.3909.01A	3	102153879	111873769	308	0.3223	NEUTRAL	NA	28	"ABHD10,ALCAM,BBX,C3orf52,CBLB,CCDC54,CD47,CD96,DPPA2,DPPA4,DZIP3,GCSAM,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,PHLDB2,PLCXD2,PVRL3,RETNLB,SLC9C1,TAGLN3,TMPRSS7,TRAT1,ZBED2,ZPLD1"
TCGA.AA.A00F.01A	3	102153879	112256565	278	-0.1345	NEUTRAL	NA	31	"ABHD10,ALCAM,ATG3,BBX,BTLA,C3orf52,CBLB,CCDC54,CD200,CD47,CD96,DPPA2,DPPA4,DZIP3,GCSAM,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,PHLDB2,PLCXD2,PVRL3,RETNLB,SLC9C1,TAGLN3,TMPRSS7,TRAT1,ZBED2,ZPLD1"
TCGA.AG.A00C.01A	3	102153879	112256565	345	-0.1919	NEUTRAL	NA	31	"ABHD10,ALCAM,ATG3,BBX,BTLA,C3orf52,CBLB,CCDC54,CD200,CD47,CD96,DPPA2,DPPA4,DZIP3,GCSAM,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,PHLDB2,PLCXD2,PVRL3,RETNLB,SLC9C1,TAGLN3,TMPRSS7,TRAT1,ZBED2,ZPLD1"
TCGA.AF.3914.01A	3	102153879	113528132	500	0.0424	NEUTRAL	NA	44	"ABHD10,ALCAM,ATG3,ATP6V1A,BBX,BOC,BTLA,C3orf17,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CFAP44,DPPA2,DPPA4,DZIP3,GCSAM,GTPBP8,GUCA1C,HHLA2,IFT57,KIAA1524,KIAA2018,MORC1,MYH15,NAA50,PHLDB2,PLCXD2,PVRL3,RETNLB,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TMPRSS7,TRAT1,ZBED2,ZPLD1"
TCGA.AA.A02E.01A	3	102175008	108175576	107	0.3319	NEUTRAL	NA	9	"ALCAM,BBX,CBLB,CCDC54,CD47,HHLA2,IFT57,MYH15,ZPLD1"
TCGA.AG.A01W.01A	3	102534254	102702533	17	0.2183	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	3	102714559	102966335	34	-0.2086	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	3	102987076	109687913	134	0.1872	NEUTRAL	NA	16	"ALCAM,BBX,CBLB,CCDC54,CD47,DPPA2,DPPA4,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AH.6643	3	103793747	104933157	298	-0.3568	NEUTRAL	NA	0	None
TCGA.D5.5540	3	103878185	105082542	287	-0.0052	NEUTRAL	NA	0	None
TCGA.AY.6196	3	104255355	136728356	9351	-0.1582	NEUTRAL	NA	201	Too-Many
TCGA.A6.6140	3	104672110	197833757	26535	-0.0581	NEUTRAL	NA	504	Too-Many
TCGA.CM.4752	3	104895564	107047442	556	-0.2046	NEUTRAL	NA	2	"ALCAM,CBLB"
TCGA.AH.6643	3	104935681	116236179	3211	0.022	NEUTRAL	NA	53	"ABHD10,ALCAM,ATG3,ATP6V1A,BBX,BOC,BTLA,C3orf17,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CFAP44,DPPA2,DPPA4,DRD3,DZIP3,GAP43,GCSAM,GRAMD1C,GTPBP8,GUCA1C,HHLA2,IFT57,KIAA1407,KIAA1524,KIAA2018,LSAMP,MORC1,MYH15,NAA50,PHLDB2,PLCXD2,PVRL3,QTRTD1,RETNLB,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TIGIT,TMPRSS7,TRAT1,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.AA.A010.01A	3	105250782	108269959	120	-8.00E-04	NEUTRAL	NA	9	"ALCAM,BBX,CBLB,CCDC54,CD47,HHLA2,IFT57,KIAA1524,MYH15"
TCGA.AA.A00O.01A	3	105250782	132071527	1668	0.0011	NEUTRAL	NA	174	Too-Many
TCGA.A6.6142	3	105254708	197833757	26398	0.242	NEUTRAL	NA	504	Too-Many
TCGA.AA.3941	3	105270549	106794050	404	-0.4858	NEUTRAL	NA	2	"ALCAM,CBLB"
TCGA.AA.3509.01A	3	105290643	107770700	41	0.2201	NEUTRAL	NA	5	"ALCAM,BBX,CBLB,CCDC54,CD47"
TCGA.NH.A6GA	3	105737607	173204264	19110	0	NEUTRAL	NA	361	Too-Many
TCGA.AA.3842	3	106142879	106613530	134	0.0288	NEUTRAL	NA	0	None
TCGA.AA.3850	3	106159947	109414657	928	-0.15685	NEUTRAL	NA	14	"BBX,CCDC54,CD47,DPPA2,DPPA4,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AZ.4308	3	106438037	197833757	26041	0.0149	NEUTRAL	NA	502	Too-Many
TCGA.AA.3842	3	106630827	197833757	25984	0.1565	NEUTRAL	NA	502	Too-Many
TCGA.AG.3598	3	106756531	112063270	1563	-0.1536	NEUTRAL	NA	26	"ABHD10,BBX,C3orf52,CCDC54,CD200,CD47,CD96,DPPA2,DPPA4,DZIP3,GCSAM,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,PHLDB2,PLCXD2,PVRL3,RETNLB,SLC9C1,TAGLN3,TMPRSS7,TRAT1,ZBED2"
TCGA.F5.6811.01A	3	106773333	120235996	570	0.2362	NEUTRAL	NA	70	"ABHD10,ADPRH,ARHGAP31,ATG3,ATP6V1A,B4GALT4,BBX,BOC,BTLA,C3orf17,C3orf30,C3orf52,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD80,CD96,CFAP44,COX17,DPPA2,DPPA4,DRD3,DZIP3,FSTL1,GAP43,GCSAM,GPR156,GRAMD1C,GSK3B,GTPBP8,GUCA1C,HHLA2,IFT57,IGSF11,KIAA1407,KIAA1524,KIAA2018,LRRC58,LSAMP,MAATS1,MORC1,MYH15,NAA50,NR1I2,PHLDB2,PLA1A,PLCXD2,POGLUT1,POPDC2,PVRL3,QTRTD1,RETNLB,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TIGIT,TIMMDC1,TMEM39A,TMPRSS7,TRAT1,UPK1B,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.AA.3941	3	106794444	109414657	758	0.0282	NEUTRAL	NA	14	"BBX,CCDC54,CD47,DPPA2,DPPA4,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AA.3844	3	106988438	109348899	716	-0.1456	NEUTRAL	NA	14	"BBX,CCDC54,CD47,DPPA2,DPPA4,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.CM.4752	3	107049244	111482156	1274	0.1042	NEUTRAL	NA	19	"BBX,CCDC54,CD47,CD96,DPPA2,DPPA4,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,PHLDB2,PLCXD2,PVRL3,RETNLB,TRAT1,ZBED2"
TCGA.DY.A1DC	3	107205498	107205839	3	-0.4789	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	3	107778249	107798791	4	-0.4289	NEUTRAL	NA	1	CD47
TCGA.AG.4009.01A	3	107881287	108822644	146	0.0864	NEUTRAL	NA	9	"DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AZ.6607	3	107886924	124897699	5205	-0.0383	NEUTRAL	NA	108	Too-Many
TCGA.AA.3693	3	108037842	108039512	3	-0.5126	NEUTRAL	NA	1	HHLA2
TCGA.AA.3693	3	108039553	110511441	690	0.3263	NEUTRAL	NA	10	"DPPA2,DPPA4,DZIP3,GUCA1C,HHLA2,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AA.A00D.01A	3	108076664	108220511	10	0.2209	NEUTRAL	NA	2	"HHLA2,MYH15"
TCGA.AA.A00L.01A	3	108076664	108220511	12	0.1314	NEUTRAL	NA	2	"HHLA2,MYH15"
TCGA.AA.A02E.01A	3	108181921	126184949	1180	0.2806	NEUTRAL	NA	116	Too-Many
TCGA.AA.A00Q.01A	3	108269959	113464694	337	-0.4667	NEUTRAL	NA	34	"ABHD10,ATG3,BOC,BTLA,C3orf17,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,CFAP44,DPPA2,DPPA4,DZIP3,GCSAM,GTPBP8,GUCA1C,KIAA1524,KIAA2018,MORC1,NAA50,PHLDB2,PLCXD2,PVRL3,RETNLB,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TMPRSS7,TRAT1,ZBED2"
TCGA.AG.3611.01A	3	108281923	108308069	12	-0.1227	NEUTRAL	NA	1	KIAA1524
TCGA.CK.5914.01A	3	108295064	111870655	176	0.1409	NEUTRAL	NA	19	"ABHD10,C3orf52,CD96,DPPA2,DPPA4,DZIP3,GCSAM,GUCA1C,KIAA1524,MORC1,PHLDB2,PLCXD2,PVRL3,RETNLB,SLC9C1,TAGLN3,TMPRSS7,TRAT1,ZBED2"
TCGA.AA.A010.01A	3	108298146	108403016	31	0.0406	NEUTRAL	NA	2	"DZIP3,KIAA1524"
TCGA.AG.3611.01A	3	108324173	108836804	70	0.2251	NEUTRAL	NA	5	"DZIP3,GUCA1C,MORC1,RETNLB,TRAT1"
TCGA.AA.A010.01A	3	108405250	112736243	234	0.3765	NEUTRAL	NA	27	"ABHD10,ATG3,BTLA,C3orf17,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,DPPA2,DPPA4,DZIP3,GCSAM,GTPBP8,GUCA1C,MORC1,PHLDB2,PLCXD2,PVRL3,RETNLB,SLC35A5,SLC9C1,TAGLN3,TMPRSS7,TRAT1,ZBED2"
TCGA.AA.3509.01A	3	108682211	113393606	298	0.2525	NEUTRAL	NA	28	"ABHD10,ATG3,BOC,BTLA,C3orf17,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,CFAP44,DPPA2,DPPA4,GCSAM,GTPBP8,KIAA2018,MORC1,PHLDB2,PLCXD2,PVRL3,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TMPRSS7,ZBED2"
TCGA.D5.5540	3	108697402	127519179	5700	0.0121	NEUTRAL	NA	123	Too-Many
TCGA.AZ.4684.01A	3	108818163	111849235	102	0.1525	NEUTRAL	NA	13	"ABHD10,C3orf52,CD96,DPPA2,DPPA4,GCSAM,MORC1,PHLDB2,PLCXD2,PVRL3,TAGLN3,TMPRSS7,ZBED2"
TCGA.AG.3891.01A	3	108829535	109056241	14	0.2117	NEUTRAL	NA	3	"DPPA2,DPPA4,MORC1"
TCGA.CK.4948.01B	3	108836804	109128933	14	-0.3081	NEUTRAL	NA	3	"DPPA2,DPPA4,MORC1"
TCGA.AG.4009.01A	3	109019174	112218074	124	0.1168	NEUTRAL	NA	15	"ABHD10,BTLA,C3orf52,CD200,CD96,DPPA2,DPPA4,GCSAM,PHLDB2,PLCXD2,PVRL3,SLC9C1,TAGLN3,TMPRSS7,ZBED2"
TCGA.AG.3891.01A	3	109128933	124578052	954	-0.1462	NEUTRAL	NA	94	"ABHD10,ADCY5,ADPRH,ARGFX,ARHGAP31,ATG3,ATP6V1A,B4GALT4,BOC,BTLA,C3orf17,C3orf30,C3orf52,CASR,CCDC14,CCDC58,CCDC80,CD200,CD200R1,CD200R1L,CD80,CD86,CD96,CFAP44,COX17,CSTA,DIRC2,DRD3,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GAP43,GCSAM,GOLGB1,GPR156,GRAMD1C,GSK3B,GTF2E1,GTPBP8,HACD2,HCLS1,HGD,HSPBAP1,IGSF11,ILDR1,IQCB1,ITGB5,KALRN,KIAA1407,KIAA2018,KPNA1,LRRC58,LSAMP,MAATS1,MYLK,NAA50,NDUFB4,NR1I2,PARP14,PARP15,PARP9,PDIA5,PHLDB2,PLA1A,PLCXD2,POGLUT1,POLQ,POPDC2,PVRL3,QTRTD1,RABL3,ROPN1,SEC22A,SEMA5B,SIDT1,SLC15A2,SLC35A5,SLC9C1,SPICE1,STXBP5L,TAGLN3,TIGIT,TIMMDC1,TMEM39A,TMPRSS7,UMPS,UPK1B,WDR5B,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.CK.4948.01B	3	109136660	119165838	395	0.0215	NEUTRAL	NA	43	"ABHD10,ARHGAP31,ATG3,ATP6V1A,B4GALT4,BOC,BTLA,C3orf17,C3orf30,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,CFAP44,DRD3,GAP43,GCSAM,GRAMD1C,GTPBP8,IGSF11,KIAA1407,KIAA2018,LSAMP,NAA50,PHLDB2,PLCXD2,PVRL3,QTRTD1,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TIGIT,TMEM39A,TMPRSS7,UPK1B,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.AA.3844	3	109350051	111285133	508	-0.5007	NEUTRAL	NA	2	"CD96,PVRL3"
TCGA.AG.A01W.01A	3	109693989	109730701	10	-0.2407	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	3	109752669	110271138	82	0.1523	NEUTRAL	NA	0	None
TCGA.CI.6623	3	110081244	110570275	167	-0.2768	NEUTRAL	NA	0	None
TCGA.AA.3526	3	110409040	197833757	24949	0.0099	NEUTRAL	NA	488	Too-Many
TCGA.AA.3693	3	110525572	165867003	15712	0.3126	NEUTRAL	NA	314	Too-Many
TCGA.CI.6623	3	110571960	129760621	5672	0.0217	NEUTRAL	NA	147	Too-Many
TCGA.AG.A01W.01A	3	110619355	114149330	163	0.1445	NEUTRAL	NA	35	"ABHD10,ATG3,ATP6V1A,BOC,BTLA,C3orf17,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,CFAP44,DRD3,GCSAM,GRAMD1C,GTPBP8,KIAA1407,KIAA2018,NAA50,PHLDB2,PLCXD2,PVRL3,QTRTD1,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TIGIT,TMPRSS7,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.AG.3611.01A	3	110790828	119530334	420	0.1793	NEUTRAL	NA	52	"ABHD10,ADPRH,ARHGAP31,ATG3,ATP6V1A,B4GALT4,BOC,BTLA,C3orf17,C3orf30,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD80,CD96,CFAP44,COX17,DRD3,GAP43,GCSAM,GRAMD1C,GTPBP8,IGSF11,KIAA1407,KIAA2018,LSAMP,MAATS1,NAA50,NR1I2,PHLDB2,PLA1A,PLCXD2,POGLUT1,POPDC2,PVRL3,QTRTD1,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TIGIT,TIMMDC1,TMEM39A,TMPRSS7,UPK1B,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.AA.A01S	3	110810449	197833757	24856	0.01265	NEUTRAL	NA	488	Too-Many
TCGA.AA.3850	3	111257404	111862033	242	-0.09895	NEUTRAL	NA	10	"ABHD10,C3orf52,CD96,GCSAM,PHLDB2,PLCXD2,SLC9C1,TAGLN3,TMPRSS7,ZBED2"
TCGA.AA.3844	3	111285875	114111406	894	-0.1256	NEUTRAL	NA	34	"ABHD10,ATG3,ATP6V1A,BOC,BTLA,C3orf17,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,CFAP44,DRD3,GCSAM,GRAMD1C,GTPBP8,KIAA1407,KIAA2018,NAA50,PHLDB2,PLCXD2,QTRTD1,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TIGIT,TMPRSS7,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.AA.3941	3	111290411	111862033	228	0.0501	NEUTRAL	NA	10	"ABHD10,C3orf52,CD96,GCSAM,PHLDB2,PLCXD2,SLC9C1,TAGLN3,TMPRSS7,ZBED2"
TCGA.CM.4752	3	111490139	153231223	12250	-0.1973	NEUTRAL	NA	270	Too-Many
TCGA.AG.3909.01A	3	111886030	111923026	9	-0.4394	NEUTRAL	NA	1	SLC9C1
TCGA.AA.3941	3	111926104	112697040	275	-0.1096	NEUTRAL	NA	8	"ATG3,BTLA,CCDC80,CD200,CD200R1,CD200R1L,SLC35A5,SLC9C1"
TCGA.AA.3850	3	111926104	114110199	650	-0.05385	NEUTRAL	NA	25	"ATG3,ATP6V1A,BOC,BTLA,C3orf17,CCDC80,CD200,CD200R1,CD200R1L,CFAP44,DRD3,GRAMD1C,GTPBP8,KIAA1407,KIAA2018,NAA50,QTRTD1,SIDT1,SLC35A5,SLC9C1,SPICE1,TIGIT,ZBTB20,ZDHHC23,ZNF80"
TCGA.AG.3909.01A	3	111926984	112262846	33	0.2152	NEUTRAL	NA	4	"ATG3,BTLA,CD200,SLC9C1"
TCGA.CK.5914.01A	3	111936248	111988715	9	0.3501	NEUTRAL	NA	1	SLC9C1
TCGA.CK.5914.01A	3	111993727	112218074	17	-0.1518	NEUTRAL	NA	3	"BTLA,CD200,SLC9C1"
TCGA.AG.3598	3	112068144	112837074	263	-0.1472	NEUTRAL	NA	9	"ATG3,BTLA,C3orf17,CCDC80,CD200,CD200R1,CD200R1L,GTPBP8,SLC35A5"
TCGA.AG.4009.01A	3	112251489	112292668	16	-0.2943	NEUTRAL	NA	2	"ATG3,SLC35A5"
TCGA.AG.A00C.01A	3	112256923	112299346	13	0.293	NEUTRAL	NA	2	"ATG3,SLC35A5"
TCGA.AA.A00F.01A	3	112256923	112301469	14	0.1851	NEUTRAL	NA	2	"ATG3,SLC35A5"
TCGA.AG.3909.01A	3	112292668	112301469	3	-0.1544	NEUTRAL	NA	1	SLC35A5
TCGA.CK.5914.01A	3	112299346	112709839	23	0.3317	NEUTRAL	NA	5	"CCDC80,CD200R1,CD200R1L,GTPBP8,SLC35A5"
TCGA.AG.4009.01A	3	112299346	112738348	38	0.0506	NEUTRAL	NA	6	"C3orf17,CCDC80,CD200R1,CD200R1L,GTPBP8,SLC35A5"
TCGA.AG.A00C.01A	3	112301469	112715691	25	-0.2166	NEUTRAL	NA	5	"CCDC80,CD200R1,CD200R1L,GTPBP8,SLC35A5"
TCGA.AA.A00F.01A	3	112324246	112711833	19	-0.1959	NEUTRAL	NA	4	"CCDC80,CD200R1,CD200R1L,GTPBP8"
TCGA.AA.3941	3	112707675	113008605	123	0.2746	NEUTRAL	NA	4	"BOC,C3orf17,CFAP44,GTPBP8"
TCGA.AG.3909.01A	3	112711833	112715691	3	-0.02	NEUTRAL	NA	1	GTPBP8
TCGA.AA.A00F.01A	3	112713940	112736243	13	0.2408	NEUTRAL	NA	2	"C3orf17,GTPBP8"
TCGA.AG.A008.01A	3	112724372	112738348	10	0.3718	NEUTRAL	NA	1	C3orf17
TCGA.AG.A01L.01A	3	112726981	112736243	8	-0.4301	NEUTRAL	NA	1	C3orf17
TCGA.AA.A00L.01A	3	112726981	112999856	22	-0.2119	NEUTRAL	NA	2	"BOC,C3orf17"
TCGA.AZ.4684.01A	3	112732082	113004172	21	0.0197	NEUTRAL	NA	2	"BOC,C3orf17"
TCGA.CK.5914.01A	3	112738348	113152364	38	0.2233	NEUTRAL	NA	3	"BOC,C3orf17,CFAP44"
TCGA.AG.A00C.01A	3	112738348	113329804	72	-0.125	NEUTRAL	NA	5	"BOC,C3orf17,CFAP44,SIDT1,SPICE1"
TCGA.AA.A00F.01A	3	112738348	113557670	101	-0.0629	NEUTRAL	NA	8	"ATP6V1A,BOC,C3orf17,CFAP44,KIAA2018,NAA50,SIDT1,SPICE1"
TCGA.AG.A01L.01A	3	112738348	119501552	278	0.1935	NEUTRAL	NA	33	"ADPRH,ARHGAP31,ATP6V1A,B4GALT4,BOC,C3orf17,C3orf30,CD80,CFAP44,COX17,DRD3,GAP43,GRAMD1C,IGSF11,KIAA1407,KIAA2018,LSAMP,MAATS1,NAA50,NR1I2,PLA1A,POGLUT1,POPDC2,QTRTD1,SIDT1,SPICE1,TIGIT,TIMMDC1,TMEM39A,UPK1B,ZBTB20,ZDHHC23,ZNF80"
TCGA.AG.4009.01A	3	112968620	113005473	17	0.3744	NEUTRAL	NA	1	BOC
TCGA.AG.A008.01A	3	112968620	130095042	1211	0.1129	NEUTRAL	NA	129	Too-Many
TCGA.AA.A010.01A	3	113005473	113346443	61	0.3049	NEUTRAL	NA	4	"BOC,CFAP44,SIDT1,SPICE1"
TCGA.AA.3941	3	113010465	113274563	63	-0.0378	NEUTRAL	NA	3	"CFAP44,SIDT1,SPICE1"
TCGA.AG.4009.01A	3	113081949	113528132	85	0.0616	NEUTRAL	NA	6	"ATP6V1A,CFAP44,KIAA2018,NAA50,SIDT1,SPICE1"
TCGA.AA.A00N.01A	3	113138847	113145995	3	-0.0491	NEUTRAL	NA	1	CFAP44
TCGA.AA.A00N.01A	3	113184453	113251822	11	-0.207	NEUTRAL	NA	2	"SIDT1,SPICE1"
TCGA.AG.3909.01A	3	113186939	113330886	28	0.1676	NEUTRAL	NA	2	"SIDT1,SPICE1"
TCGA.CK.5914.01A	3	113251822	113528132	49	0.2459	NEUTRAL	NA	4	"ATP6V1A,KIAA2018,NAA50,SIDT1"
TCGA.AA.3941	3	113274614	114028632	160	0.2843	NEUTRAL	NA	11	"ATP6V1A,DRD3,GRAMD1C,KIAA1407,KIAA2018,NAA50,QTRTD1,SIDT1,TIGIT,ZDHHC23,ZNF80"
TCGA.AA.A00N.01A	3	113285220	113329804	17	0.3694	NEUTRAL	NA	1	SIDT1
TCGA.AZ.4684.01A	3	113311786	113393606	22	-0.0933	NEUTRAL	NA	2	"KIAA2018,SIDT1"
TCGA.AG.A00C.01A	3	113330886	113442773	17	0.1995	NEUTRAL	NA	3	"KIAA2018,NAA50,SIDT1"
TCGA.AA.A00N.01A	3	113330886	113497570	19	-0.4191	NEUTRAL	NA	4	"ATP6V1A,KIAA2018,NAA50,SIDT1"
TCGA.AG.3909.01A	3	113373764	113528132	25	0.2218	NEUTRAL	NA	3	"ATP6V1A,KIAA2018,NAA50"
TCGA.AZ.4684.01A	3	113442773	113696986	39	-0.066	NEUTRAL	NA	5	"ATP6V1A,GRAMD1C,KIAA1407,NAA50,ZDHHC23"
TCGA.AA.3509.01A	3	113442773	120628374	265	0.0879	NEUTRAL	NA	36	"ADPRH,ARHGAP31,ATP6V1A,B4GALT4,C3orf30,CD80,COX17,DRD3,FSTL1,GAP43,GPR156,GRAMD1C,GSK3B,GTF2E1,HGD,IGSF11,KIAA1407,LRRC58,LSAMP,MAATS1,NAA50,NDUFB4,NR1I2,PLA1A,POGLUT1,POPDC2,QTRTD1,RABL3,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UPK1B,ZBTB20,ZDHHC23,ZNF80"
TCGA.AG.A00C.01A	3	113464694	113528132	14	-0.0928	NEUTRAL	NA	2	"ATP6V1A,NAA50"
TCGA.AA.A00Q.01A	3	113497570	113697668	38	-0.1295	NEUTRAL	NA	4	"ATP6V1A,GRAMD1C,KIAA1407,ZDHHC23"
TCGA.AA.A010.01A	3	113514708	113627758	13	-0.3917	NEUTRAL	NA	2	"ATP6V1A,GRAMD1C"
TCGA.AA.A00D.01A	3	113528132	113667632	20	-0.0705	NEUTRAL	NA	3	"ATP6V1A,GRAMD1C,ZDHHC23"
TCGA.AA.A00F.01A	3	113563303	113683961	23	0.3001	NEUTRAL	NA	3	"GRAMD1C,KIAA1407,ZDHHC23"
TCGA.AA.A01Q.01A	3	113652341	113675149	10	0.1911	NEUTRAL	NA	2	"GRAMD1C,ZDHHC23"
TCGA.AG.A00C.01A	3	113655137	121388011	321	-0.1443	NEUTRAL	NA	39	"ADPRH,ARGFX,ARHGAP31,B4GALT4,C3orf30,CD80,COX17,DRD3,FBXO40,FSTL1,GAP43,GOLGB1,GPR156,GRAMD1C,GSK3B,GTF2E1,HCLS1,HGD,IGSF11,KIAA1407,LRRC58,LSAMP,MAATS1,NDUFB4,NR1I2,PLA1A,POGLUT1,POLQ,POPDC2,QTRTD1,RABL3,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UPK1B,ZBTB20,ZDHHC23,ZNF80"
TCGA.AA.A00D.01A	3	113672516	113697668	7	-0.4951	NEUTRAL	NA	2	"KIAA1407,ZDHHC23"
TCGA.CK.5914.01A	3	113677163	119187815	99	0.2517	NEUTRAL	NA	16	"ARHGAP31,B4GALT4,C3orf30,DRD3,GAP43,IGSF11,KIAA1407,LSAMP,POGLUT1,QTRTD1,TIGIT,TMEM39A,UPK1B,ZBTB20,ZDHHC23,ZNF80"
TCGA.AG.4009.01A	3	113679472	121388011	310	0.0596	NEUTRAL	NA	38	"ADPRH,ARGFX,ARHGAP31,B4GALT4,C3orf30,CD80,COX17,DRD3,FBXO40,FSTL1,GAP43,GOLGB1,GPR156,GSK3B,GTF2E1,HCLS1,HGD,IGSF11,KIAA1407,LRRC58,LSAMP,MAATS1,NDUFB4,NR1I2,PLA1A,POGLUT1,POLQ,POPDC2,QTRTD1,RABL3,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UPK1B,ZBTB20,ZDHHC23,ZNF80"
TCGA.AF.3914.01A	3	113679472	122447108	457	0.0257	NEUTRAL	NA	53	"ADPRH,ARGFX,ARHGAP31,B4GALT4,C3orf30,CASR,CCDC58,CD80,CD86,COX17,CSTA,DRD3,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GAP43,GOLGB1,GPR156,GSK3B,GTF2E1,HCLS1,HGD,IGSF11,ILDR1,IQCB1,KIAA1407,KPNA1,LRRC58,LSAMP,MAATS1,NDUFB4,NR1I2,PARP14,PARP15,PARP9,PLA1A,POGLUT1,POLQ,POPDC2,QTRTD1,RABL3,SLC15A2,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UPK1B,WDR5B,ZBTB20,ZDHHC23,ZNF80"
TCGA.AG.3906.01A	3	113683961	124527821	653	-0.0101	NEUTRAL	NA	65	"ADCY5,ADPRH,ARGFX,ARHGAP31,B4GALT4,C3orf30,CASR,CCDC14,CCDC58,CD80,CD86,COX17,CSTA,DIRC2,DRD3,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GAP43,GOLGB1,GPR156,GSK3B,GTF2E1,HACD2,HCLS1,HGD,HSPBAP1,IGSF11,ILDR1,IQCB1,ITGB5,KALRN,KIAA1407,KPNA1,LRRC58,LSAMP,MAATS1,MYLK,NDUFB4,NR1I2,PARP14,PARP15,PARP9,PDIA5,PLA1A,POGLUT1,POLQ,POPDC2,QTRTD1,RABL3,ROPN1,SEC22A,SEMA5B,SLC15A2,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UMPS,UPK1B,WDR5B,ZBTB20,ZNF80"
TCGA.AA.A00F.01A	3	113696986	121240803	240	-0.1059	NEUTRAL	NA	33	"ADPRH,ARHGAP31,B4GALT4,C3orf30,CD80,COX17,DRD3,FSTL1,GAP43,GPR156,GSK3B,GTF2E1,HGD,IGSF11,KIAA1407,LRRC58,LSAMP,MAATS1,NDUFB4,NR1I2,PLA1A,POGLUT1,POLQ,POPDC2,QTRTD1,RABL3,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UPK1B,ZBTB20,ZNF80"
TCGA.AA.A010.01A	3	113699455	118931349	67	0.2168	NEUTRAL	NA	12	"B4GALT4,C3orf30,DRD3,GAP43,IGSF11,KIAA1407,LSAMP,QTRTD1,TIGIT,UPK1B,ZBTB20,ZNF80"
TCGA.AZ.4684.01A	3	113775168	119582215	152	0.1239	NEUTRAL	NA	24	"ADPRH,ARHGAP31,B4GALT4,C3orf30,CD80,COX17,DRD3,GAP43,GSK3B,IGSF11,KIAA1407,LSAMP,MAATS1,NR1I2,PLA1A,POGLUT1,POPDC2,QTRTD1,TIGIT,TIMMDC1,TMEM39A,UPK1B,ZBTB20,ZNF80"
TCGA.AA.A00Q.01A	3	113785002	124653429	593	-0.3726	NEUTRAL	NA	65	"ADCY5,ADPRH,ARGFX,ARHGAP31,B4GALT4,C3orf30,CASR,CCDC14,CCDC58,CD80,CD86,COX17,CSTA,DIRC2,DRD3,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GAP43,GOLGB1,GPR156,GSK3B,GTF2E1,HACD2,HCLS1,HGD,HSPBAP1,IGSF11,ILDR1,IQCB1,ITGB5,KALRN,KPNA1,LRRC58,LSAMP,MAATS1,MUC13,MYLK,NDUFB4,NR1I2,PARP14,PARP15,PARP9,PDIA5,PLA1A,POGLUT1,POLQ,POPDC2,QTRTD1,RABL3,ROPN1,SEC22A,SEMA5B,SLC15A2,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UMPS,UPK1B,WDR5B,ZBTB20,ZNF80"
TCGA.AA.A00L.01A	3	113789455	121350646	236	-0.4415	NEUTRAL	NA	35	"ADPRH,ARGFX,ARHGAP31,B4GALT4,C3orf30,CD80,COX17,DRD3,FBXO40,FSTL1,GAP43,GPR156,GSK3B,GTF2E1,HCLS1,HGD,IGSF11,LRRC58,LSAMP,MAATS1,NDUFB4,NR1I2,PLA1A,POGLUT1,POLQ,POPDC2,QTRTD1,RABL3,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UPK1B,ZBTB20,ZNF80"
TCGA.AG.A023.01A	3	113955073	127295478	782	0.0375	NEUTRAL	NA	84	"ADCY5,ADPRH,ALDH1L1,ALG1L,ARGFX,ARHGAP31,B4GALT4,C3orf22,C3orf30,C3orf56,CASR,CCDC14,CCDC37,CCDC58,CD80,CD86,CHCHD6,CHST13,COX17,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GAP43,GOLGB1,GPR156,GSK3B,GTF2E1,HACD2,HCLS1,HEG1,HGD,HSPBAP1,IGSF11,ILDR1,IQCB1,ITGB5,KALRN,KLF15,KPNA1,LRRC58,LSAMP,MAATS1,MUC13,MYLK,NDUFB4,NR1I2,OSBPL11,PARP14,PARP15,PARP9,PDIA5,PLA1A,PLXNA1,POGLUT1,POLQ,POPDC2,RABL3,ROPN1,ROPN1B,SEC22A,SEMA5B,SLC12A8,SLC15A2,SLC41A3,SNX4,STXBP5L,TIGIT,TIMMDC1,TMEM39A,TPRA1,TXNRD3,TXNRD3NB,UMPS,UPK1B,UROC1,WDR5B,ZBTB20,ZNF148,ZNF80,ZXDC"
TCGA.AA.3941	3	114034097	114110628	31	-0.0124	NEUTRAL	NA	1	ZBTB20
TCGA.AA.3844	3	114112055	118695318	1484	-0.4604	NEUTRAL	NA	4	"GAP43,IGSF11,LSAMP,ZBTB20"
TCGA.AA.3941	3	114143694	114244795	27	-0.079	NEUTRAL	NA	1	ZBTB20
TCGA.AG.A01W.01A	3	114176266	114505405	38	-0.1553	NEUTRAL	NA	1	ZBTB20
TCGA.AG.3598	3	114214364	114565211	94	-0.1707	NEUTRAL	NA	1	ZBTB20
TCGA.AG.A01W.01A	3	114506527	122690243	401	0.1188	NEUTRAL	NA	50	"ADPRH,ARGFX,ARHGAP31,B4GALT4,C3orf30,CASR,CCDC58,CD80,CD86,COX17,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GAP43,GOLGB1,GPR156,GSK3B,GTF2E1,HCLS1,HGD,HSPBAP1,IGSF11,ILDR1,IQCB1,KPNA1,LRRC58,LSAMP,MAATS1,NDUFB4,NR1I2,PARP14,PARP15,PARP9,PLA1A,POGLUT1,POLQ,POPDC2,RABL3,SEMA5B,SLC15A2,STXBP5L,TIMMDC1,TMEM39A,UPK1B,WDR5B,ZBTB20"
TCGA.AA.A01Z	3	114615067	197833757	23669	0.0114	NEUTRAL	NA	454	Too-Many
TCGA.AA.3492	3	114791146	197102870	23527	0.0083	NEUTRAL	NA	447	Too-Many
TCGA.F5.6810	3	114821298	197833757	23636	0.189	NEUTRAL	NA	454	Too-Many
TCGA.DY.A1DG	3	115306576	165200880	14197	0.0068	NEUTRAL	NA	278	Too-Many
TCGA.F4.6461	3	115440006	117803573	867	-0.4455	NEUTRAL	NA	2	"GAP43,LSAMP"
TCGA.EI.7002	3	116028379	165957103	14133	0.3267	NEUTRAL	NA	278	Too-Many
TCGA.F5.6814	3	116102744	116943009	365	-0.3819	NEUTRAL	NA	1	LSAMP
TCGA.CM.5862	3	116120737	141430082	7498	-0.1025	NEUTRAL	NA	178	Too-Many
TCGA.AY.A69D	3	116134656	116249214	34	-0.2914	NEUTRAL	NA	1	LSAMP
TCGA.AH.6643	3	116236363	116971202	330	-0.4131	NEUTRAL	NA	0	None
TCGA.AY.4071	3	116552603	197833757	23022	0.2202	NEUTRAL	NA	451	Too-Many
TCGA.A6.5656	3	116636935	197833757	22989	0.0053	NEUTRAL	NA	451	Too-Many
TCGA.AA.3510	3	116741260	197833757	23024	0.0066	NEUTRAL	NA	451	Too-Many
TCGA.AG.3894	3	116868162	174767353	16308	-0.0033	NEUTRAL	NA	311	Too-Many
TCGA.F4.6460	3	116886655	128311780	3491	-0.3371	NEUTRAL	NA	89	"ABTB1,ADCY5,ADPRH,ALDH1L1,ALG1L,ARGFX,ARHGAP31,B4GALT4,C3orf22,C3orf30,C3orf56,CASR,CCDC14,CCDC37,CCDC58,CD80,CD86,CHCHD6,CHST13,COX17,CSTA,DIRC2,DNAJB8,DTX3L,EAF2,EEFSEC,FAM162A,FBXO40,FSTL1,GATA2,GOLGB1,GPR156,GSK3B,GTF2E1,HACD2,HCLS1,HEG1,HGD,HSPBAP1,IGSF11,ILDR1,IQCB1,ITGB5,KALRN,KBTBD12,KLF15,KPNA1,LRRC58,MAATS1,MCM2,MGLL,MUC13,MYLK,NDUFB4,NR1I2,OSBPL11,PARP14,PARP15,PARP9,PDIA5,PLA1A,PLXNA1,PODXL2,POGLUT1,POLQ,POPDC2,RABL3,ROPN1,ROPN1B,RUVBL1,SEC22A,SEC61A1,SEMA5B,SLC12A8,SLC15A2,SLC41A3,SNX4,STXBP5L,TIMMDC1,TMEM39A,TPRA1,TXNRD3,TXNRD3NB,UMPS,UPK1B,UROC1,WDR5B,ZNF148,ZXDC"
TCGA.AA.3860	3	116899785	175151788	16494	0.0208	NEUTRAL	NA	311	Too-Many
TCGA.AY.A69D	3	116915305	197833757	22916	0.2715	NEUTRAL	NA	451	Too-Many
TCGA.CM.6161	3	116918401	197833757	22895	0.3277	NEUTRAL	NA	451	Too-Many
TCGA.F5.6814	3	116945079	141080953	7071	-0.0717	NEUTRAL	NA	176	Too-Many
TCGA.AH.6643	3	116972319	129760621	3698	-0.0096	NEUTRAL	NA	110	Too-Many
TCGA.F4.6461	3	117804153	197833757	22550	0.0104	NEUTRAL	NA	451	Too-Many
TCGA.EI.6509	3	117877409	174288866	15832	0.0176	NEUTRAL	NA	310	Too-Many
TCGA.AG.A020	3	118159066	118193683	24	0.03	NEUTRAL	NA	0	None
TCGA.AA.3850	3	118275516	120575851	702	0.06035	NEUTRAL	NA	23	"ADPRH,ARHGAP31,B4GALT4,C3orf30,CD80,COX17,FSTL1,GPR156,GSK3B,GTF2E1,HGD,IGSF11,LRRC58,MAATS1,NDUFB4,NR1I2,PLA1A,POGLUT1,POPDC2,RABL3,TIMMDC1,TMEM39A,UPK1B"
TCGA.AA.3811	3	118488235	142922676	6975	-0.1445	NEUTRAL	NA	190	Too-Many
TCGA.AA.3941	3	118498134	118600781	45	0.1173	NEUTRAL	NA	0	None
TCGA.AA.3941	3	118651531	118668259	6	0.2921	NEUTRAL	NA	1	IGSF11
TCGA.AG.A020	3	118688393	197833757	22323	0.0923	NEUTRAL	NA	451	Too-Many
TCGA.AA.3941	3	118688423	118719479	9	-0.331	NEUTRAL	NA	1	IGSF11
TCGA.AA.3844	3	118700782	124136894	1533	-0.0469	NEUTRAL	NA	55	"ADCY5,ADPRH,ARGFX,ARHGAP31,B4GALT4,C3orf30,CASR,CCDC14,CCDC58,CD80,CD86,COX17,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GOLGB1,GPR156,GSK3B,GTF2E1,HACD2,HCLS1,HGD,HSPBAP1,IGSF11,ILDR1,IQCB1,KALRN,KPNA1,LRRC58,MAATS1,MYLK,NDUFB4,NR1I2,PARP14,PARP15,PARP9,PDIA5,PLA1A,POGLUT1,POLQ,POPDC2,RABL3,ROPN1,SEC22A,SEMA5B,SLC15A2,STXBP5L,TIMMDC1,TMEM39A,UPK1B,WDR5B"
TCGA.AA.3982	3	118700782	129946917	3117	0.1454	NEUTRAL	NA	111	Too-Many
TCGA.AA.3941	3	118730932	119141067	130	0.2356	NEUTRAL	NA	5	"ARHGAP31,B4GALT4,C3orf30,IGSF11,UPK1B"
TCGA.AA.A010.01A	3	119013715	119099693	4	0.0998	NEUTRAL	NA	1	ARHGAP31
TCGA.AA.A010.01A	3	119128302	119180770	11	0.0296	NEUTRAL	NA	2	"ARHGAP31,TMEM39A"
TCGA.AA.3941	3	119161981	120481777	391	0.2428	NEUTRAL	NA	18	"ADPRH,CD80,COX17,FSTL1,GPR156,GSK3B,GTF2E1,HGD,LRRC58,MAATS1,NDUFB4,NR1I2,PLA1A,POGLUT1,POPDC2,RABL3,TIMMDC1,TMEM39A"
TCGA.AA.A00D.01A	3	119165838	119205648	11	-0.0127	NEUTRAL	NA	2	"POGLUT1,TMEM39A"
TCGA.AG.3909.01A	3	119171239	119210312	12	-0.5051	NEUTRAL	NA	2	"POGLUT1,TMEM39A"
TCGA.CK.4948.01B	3	119171239	119222735	18	-0.3098	NEUTRAL	NA	3	"POGLUT1,TIMMDC1,TMEM39A"
TCGA.AG.3909.01A	3	119211081	119421897	34	0.2847	NEUTRAL	NA	8	"ADPRH,CD80,COX17,MAATS1,PLA1A,POGLUT1,POPDC2,TIMMDC1"
TCGA.AA.A010.01A	3	119232436	119276427	8	-0.0984	NEUTRAL	NA	2	"CD80,TIMMDC1"
TCGA.CK.5914.01A	3	119232436	119421897	29	0.3606	NEUTRAL	NA	7	"ADPRH,CD80,COX17,MAATS1,PLA1A,POPDC2,TIMMDC1"
TCGA.CK.4948.01B	3	119232436	121212288	166	0.045	NEUTRAL	NA	18	"ADPRH,CD80,COX17,FSTL1,GPR156,GSK3B,GTF2E1,HGD,LRRC58,MAATS1,NDUFB4,NR1I2,PLA1A,POLQ,POPDC2,RABL3,STXBP5L,TIMMDC1"
TCGA.AG.3598	3	119278539	120071566	223	0.0123	NEUTRAL	NA	9	"ADPRH,COX17,GPR156,GSK3B,LRRC58,MAATS1,NR1I2,PLA1A,POPDC2"
TCGA.G4.6626	3	119355410	129760621	2902	0.2871	NEUTRAL	NA	99	"ABTB1,ACAD9,ADCY5,ALDH1L1,ALG1L,ARGFX,C3orf22,C3orf56,CASR,CCDC14,CCDC37,CCDC58,CD86,CHCHD6,CHST13,CNBP,COPG1,COX17,CSTA,DIRC2,DNAJB8,DTX3L,EAF2,EEFSEC,EFCAB12,EFCC1,FAM162A,FBXO40,FSTL1,GATA2,GOLGB1,GP9,GPR156,GSK3B,GTF2E1,H1FOO,H1FX,HACD2,HCLS1,HEG1,HGD,HMCES,HSPBAP1,IFT122,ILDR1,IQCB1,ISY1,ISY1-RAB43,ITGB5,KALRN,KBTBD12,KIAA1257,KLF15,KPNA1,LRRC58,MAATS1,MBD4,MCM2,MGLL,MUC13,MYLK,NDUFB4,NR1I2,OSBPL11,PARP14,PARP15,PARP9,PDIA5,PLXNA1,PLXND1,PODXL2,POLQ,POPDC2,RAB43,RAB7A,RABL3,RHO,ROPN1,ROPN1B,RPN1,RUVBL1,SEC22A,SEC61A1,SEMA5B,SLC12A8,SLC15A2,SLC41A3,SNX4,STXBP5L,TMCC1,TPRA1,TRH,TXNRD3,TXNRD3NB,UMPS,UROC1,WDR5B,ZNF148,ZXDC"
TCGA.AA.3688	3	119355410	130899417	3168	0.0145	NEUTRAL	NA	106	Too-Many
TCGA.CK.5914.01A	3	119444981	119962819	42	0.3073	NEUTRAL	NA	4	"GPR156,GSK3B,MAATS1,NR1I2"
TCGA.AG.3909.01A	3	119444981	121230692	136	0.2818	NEUTRAL	NA	12	"FSTL1,GPR156,GSK3B,GTF2E1,HGD,LRRC58,MAATS1,NDUFB4,NR1I2,POLQ,RABL3,STXBP5L"
TCGA.AG.A01L.01A	3	119526025	119545571	9	-0.2627	NEUTRAL	NA	2	"GSK3B,NR1I2"
TCGA.AG.3611.01A	3	119531481	119545571	6	-0.3084	NEUTRAL	NA	2	"GSK3B,NR1I2"
TCGA.AA.A010.01A	3	119545571	120469380	62	0.1202	NEUTRAL	NA	8	"FSTL1,GPR156,GSK3B,GTF2E1,HGD,LRRC58,NDUFB4,RABL3"
TCGA.AG.A01L.01A	3	119562051	122259319	257	0.1806	NEUTRAL	NA	26	"ARGFX,CASR,CCDC58,CD86,CSTA,EAF2,FAM162A,FBXO40,FSTL1,GOLGB1,GPR156,GSK3B,GTF2E1,HCLS1,HGD,ILDR1,IQCB1,KPNA1,LRRC58,NDUFB4,PARP9,POLQ,RABL3,SLC15A2,STXBP5L,WDR5B"
TCGA.AG.3611.01A	3	119562051	126180370	552	0.1714	NEUTRAL	NA	55	"ADCY5,ALDH1L1,ALG1L,ARGFX,CASR,CCDC14,CCDC37,CCDC58,CD86,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GOLGB1,GPR156,GSK3B,GTF2E1,HACD2,HCLS1,HEG1,HGD,HSPBAP1,ILDR1,IQCB1,ITGB5,KALRN,KLF15,KPNA1,LRRC58,MUC13,MYLK,NDUFB4,OSBPL11,PARP14,PARP15,PARP9,PDIA5,POLQ,RABL3,ROPN1,ROPN1B,SEC22A,SEMA5B,SLC12A8,SLC15A2,SLC41A3,SNX4,STXBP5L,UMPS,WDR5B,ZNF148,ZXDC"
TCGA.AA.A01F.01A	3	119562051	126571442	582	-0.3448	NEUTRAL	NA	61	"ADCY5,ALDH1L1,ALG1L,ARGFX,C3orf22,CASR,CCDC14,CCDC37,CCDC58,CD86,CHCHD6,CHST13,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GOLGB1,GPR156,GSK3B,GTF2E1,HACD2,HCLS1,HEG1,HGD,HSPBAP1,ILDR1,IQCB1,ITGB5,KALRN,KLF15,KPNA1,LRRC58,MUC13,MYLK,NDUFB4,OSBPL11,PARP14,PARP15,PARP9,PDIA5,POLQ,RABL3,ROPN1,ROPN1B,SEC22A,SEMA5B,SLC12A8,SLC15A2,SLC41A3,SNX4,STXBP5L,TXNRD3,TXNRD3NB,UMPS,UROC1,WDR5B,ZNF148,ZXDC"
TCGA.AZ.4684.01A	3	119720841	120628374	56	0.0866	NEUTRAL	NA	9	"FSTL1,GPR156,GSK3B,GTF2E1,HGD,LRRC58,NDUFB4,RABL3,STXBP5L"
TCGA.AA.3519	3	119867014	197833757	21993	0.0209	NEUTRAL	NA	435	Too-Many
TCGA.CK.5914.01A	3	120049999	120134718	14	-0.4201	NEUTRAL	NA	2	"FSTL1,LRRC58"
TCGA.CK.5914.01A	3	120315158	121230692	80	0.2408	NEUTRAL	NA	6	"GTF2E1,HGD,NDUFB4,POLQ,RABL3,STXBP5L"
TCGA.F5.6811.01A	3	120414039	186643877	3685	0.2092	NEUTRAL	NA	361	Too-Many
TCGA.AA.3941	3	120483236	121131136	113	-0.4342	NEUTRAL	NA	2	"GTF2E1,STXBP5L"
TCGA.AA.3867	3	120817039	120872724	17	-0.4646	NEUTRAL	NA	1	STXBP5L
TCGA.AA.3977	3	120853089	124805609	1228	0.0927	NEUTRAL	NA	37	"ADCY5,ARGFX,CASR,CCDC14,CCDC58,CD86,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,GOLGB1,HACD2,HCLS1,HEG1,HSPBAP1,ILDR1,IQCB1,ITGB5,KALRN,KPNA1,MUC13,MYLK,PARP14,PARP15,PARP9,PDIA5,POLQ,ROPN1,SEC22A,SEMA5B,SLC12A8,SLC15A2,STXBP5L,UMPS,WDR5B"
TCGA.AA.3850	3	120924203	127639071	2047	0.20755	NEUTRAL	NA	60	"ABTB1,ADCY5,ALDH1L1,ALG1L,ARGFX,C3orf22,C3orf56,CASR,CCDC14,CCDC37,CCDC58,CD86,CHCHD6,CHST13,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,GOLGB1,HACD2,HCLS1,HEG1,HSPBAP1,ILDR1,IQCB1,ITGB5,KALRN,KLF15,KPNA1,MCM2,MGLL,MUC13,MYLK,OSBPL11,PARP14,PARP15,PARP9,PDIA5,PLXNA1,PODXL2,POLQ,ROPN1,ROPN1B,SEC22A,SEMA5B,SLC12A8,SLC15A2,SLC41A3,SNX4,STXBP5L,TPRA1,TXNRD3,TXNRD3NB,UMPS,UROC1,WDR5B,ZNF148,ZXDC"
TCGA.AA.3867	3	120924203	143545698	6564	0.2252	NEUTRAL	NA	168	Too-Many
TCGA.AA.A010.01A	3	120969509	121212288	33	-0.0367	NEUTRAL	NA	2	"POLQ,STXBP5L"
TCGA.AA.3941	3	121131375	123624771	716	0.2721	NEUTRAL	NA	29	"ADCY5,ARGFX,CASR,CCDC58,CD86,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,GOLGB1,HACD2,HCLS1,HSPBAP1,ILDR1,IQCB1,KPNA1,MYLK,PARP14,PARP15,PARP9,PDIA5,POLQ,SEC22A,SEMA5B,SLC15A2,STXBP5L,WDR5B"
TCGA.AZ.4684.01A	3	121137147	121208669	20	0.2325	NEUTRAL	NA	2	"POLQ,STXBP5L"
TCGA.AA.3509.01A	3	121137147	121212288	21	0.1452	NEUTRAL	NA	2	"POLQ,STXBP5L"
TCGA.CK.4948.01B	3	121215604	121264525	14	-0.2971	NEUTRAL	NA	1	POLQ
TCGA.AG.3909.01A	3	121238699	121289509	10	-0.4878	NEUTRAL	NA	2	"ARGFX,POLQ"
TCGA.AA.A00F.01A	3	121248465	121263527	6	0.3447	NEUTRAL	NA	1	POLQ
TCGA.AA.3509.01A	3	121251790	121383731	27	0.0206	NEUTRAL	NA	5	"ARGFX,FBXO40,GOLGB1,HCLS1,POLQ"
TCGA.AZ.4684.01A	3	121258241	121412571	33	0.1976	NEUTRAL	NA	5	"ARGFX,FBXO40,GOLGB1,HCLS1,POLQ"
TCGA.AA.A00F.01A	3	121264525	121339327	5	-0.0103	NEUTRAL	NA	3	"ARGFX,FBXO40,POLQ"
TCGA.CK.4948.01B	3	121289509	121514255	49	0.0541	NEUTRAL	NA	5	"ARGFX,FBXO40,GOLGB1,HCLS1,IQCB1"
TCGA.AA.A00F.01A	3	121340243	121383297	16	-0.3039	NEUTRAL	NA	3	"FBXO40,GOLGB1,HCLS1"
TCGA.AG.3909.01A	3	121361710	121388011	10	0.3312	NEUTRAL	NA	2	"GOLGB1,HCLS1"
TCGA.AA.A00F.01A	3	121383731	121395689	5	0.0462	NEUTRAL	NA	1	GOLGB1
TCGA.AG.A00C.01A	3	121395689	121435547	12	0.3294	NEUTRAL	NA	1	GOLGB1
TCGA.AA.A00F.01A	3	121396084	121421276	9	0.3396	NEUTRAL	NA	1	GOLGB1
TCGA.AA.A010.01A	3	121412571	121418599	5	-0.0683	NEUTRAL	NA	1	GOLGB1
TCGA.AA.A010.01A	3	121421276	121489180	11	-0.5039	NEUTRAL	NA	2	"GOLGB1,IQCB1"
TCGA.AA.A00N.01A	3	121433690	121448675	8	0.2086	NEUTRAL	NA	1	GOLGB1
TCGA.AZ.4684.01A	3	121433690	121507081	13	0.1938	NEUTRAL	NA	2	"GOLGB1,IQCB1"
TCGA.CK.5914.01A	3	121433690	122186132	95	-0.0311	NEUTRAL	NA	12	"CASR,CCDC58,CD86,CSTA,EAF2,FAM162A,GOLGB1,ILDR1,IQCB1,KPNA1,SLC15A2,WDR5B"
TCGA.AA.A00F.01A	3	121433690	122259319	95	-0.1083	NEUTRAL	NA	13	"CASR,CCDC58,CD86,CSTA,EAF2,FAM162A,GOLGB1,ILDR1,IQCB1,KPNA1,PARP9,SLC15A2,WDR5B"
TCGA.AG.3909.01A	3	121433690	122264208	100	0.2159	NEUTRAL	NA	13	"CASR,CCDC58,CD86,CSTA,EAF2,FAM162A,GOLGB1,ILDR1,IQCB1,KPNA1,PARP9,SLC15A2,WDR5B"
TCGA.AG.4009.01A	3	121433690	122447108	135	0.1028	NEUTRAL	NA	16	"CASR,CCDC58,CD86,CSTA,DTX3L,EAF2,FAM162A,GOLGB1,ILDR1,IQCB1,KPNA1,PARP14,PARP15,PARP9,SLC15A2,WDR5B"
TCGA.AG.A00C.01A	3	121437183	122215234	94	-0.0556	NEUTRAL	NA	12	"CASR,CCDC58,CD86,CSTA,EAF2,FAM162A,GOLGB1,ILDR1,IQCB1,KPNA1,SLC15A2,WDR5B"
TCGA.AA.3509.01A	3	121441057	121507081	9	0.0404	NEUTRAL	NA	2	"GOLGB1,IQCB1"
TCGA.AA.A00N.01A	3	121517996	121527712	3	0.2237	NEUTRAL	NA	1	IQCB1
TCGA.CK.4948.01B	3	121544849	160804309	2390	-0.0357	NEUTRAL	NA	242	Too-Many
TCGA.AG.A00Y.01A	3	121615200	130367884	766	0.2689	NEUTRAL	NA	82	"ABTB1,ACAD9,ADCY5,ALDH1L1,ALG1L,ALG1L2,C3orf22,C3orf56,CASR,CCDC14,CCDC37,CCDC58,CD86,CHCHD6,CHST13,CNBP,COL6A5,COL6A6,COPG1,CSTA,DIRC2,DNAJB8,DTX3L,EEFSEC,EFCAB12,EFCC1,FAM162A,GATA2,GP9,H1FOO,H1FX,HACD2,HEG1,HMCES,HSPBAP1,IFT122,ILDR1,ISY1,ISY1-RAB43,ITGB5,KALRN,KBTBD12,KIAA1257,KLF15,KPNA1,MBD4,MCM2,MGLL,MUC13,MYLK,OSBPL11,PARP14,PARP15,PARP9,PDIA5,PLXNA1,PLXND1,PODXL2,RAB43,RAB7A,RHO,ROPN1,ROPN1B,RPN1,RUVBL1,SEC22A,SEC61A1,SEMA5B,SLC12A8,SLC15A2,SLC41A3,SNX4,TMCC1,TPRA1,TRH,TXNRD3,TXNRD3NB,UMPS,UROC1,WDR5B,ZNF148,ZXDC"
TCGA.AA.3509.01A	3	121650457	123667488	218	-0.0404	NEUTRAL	NA	22	"ADCY5,CASR,CCDC14,CCDC58,CD86,CSTA,DIRC2,DTX3L,FAM162A,HACD2,HSPBAP1,ILDR1,KPNA1,MYLK,PARP14,PARP15,PARP9,PDIA5,SEC22A,SEMA5B,SLC15A2,WDR5B"
TCGA.AZ.4684.01A	3	121650457	123667488	218	0.0044	NEUTRAL	NA	22	"ADCY5,CASR,CCDC14,CCDC58,CD86,CSTA,DIRC2,DTX3L,FAM162A,HACD2,HSPBAP1,ILDR1,KPNA1,MYLK,PARP14,PARP15,PARP9,PDIA5,SEC22A,SEMA5B,SLC15A2,WDR5B"
TCGA.AG.3598	3	122029337	122040609	12	0.0042	NEUTRAL	NA	0	None
TCGA.AA.A00N.01A	3	122056377	122155995	17	-0.0179	NEUTRAL	NA	5	"CCDC58,CSTA,FAM162A,KPNA1,WDR5B"
TCGA.AG.A00C.01A	3	122247162	122290458	16	0.367	NEUTRAL	NA	2	"DTX3L,PARP9"
TCGA.AG.A01L.01A	3	122264208	122278372	6	-0.4053	NEUTRAL	NA	1	PARP9
TCGA.AA.A00F.01A	3	122264208	122290458	12	0.359	NEUTRAL	NA	2	"DTX3L,PARP9"
TCGA.AG.A01L.01A	3	122283247	127381030	425	0.1726	NEUTRAL	NA	41	"ADCY5,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC14,CCDC37,CHCHD6,CHST13,DIRC2,DTX3L,HACD2,HEG1,HSPBAP1,ITGB5,KALRN,KLF15,MCM2,MUC13,MYLK,OSBPL11,PARP14,PARP15,PARP9,PDIA5,PLXNA1,PODXL2,ROPN1,ROPN1B,SEC22A,SEMA5B,SLC12A8,SLC41A3,SNX4,TPRA1,TXNRD3,TXNRD3NB,UMPS,UROC1,ZNF148,ZXDC"
TCGA.CK.5914.01A	3	122296498	122399699	13	0.2033	NEUTRAL	NA	2	"PARP14,PARP15"
TCGA.AA.A00F.01A	3	122334506	122354716	8	-0.096	NEUTRAL	NA	1	PARP15
TCGA.AG.A00C.01A	3	122334506	122354716	8	-0.1645	NEUTRAL	NA	1	PARP15
TCGA.AG.3909.01A	3	122399699	122433058	12	-0.4928	NEUTRAL	NA	1	PARP14
TCGA.AG.A00C.01A	3	122399699	122496530	23	0.333	NEUTRAL	NA	2	"HSPBAP1,PARP14"
TCGA.AA.A010.01A	3	122411111	122459182	14	-0.122	NEUTRAL	NA	2	"HSPBAP1,PARP14"
TCGA.AA.A00L.01A	3	122418230	122436901	4	0.2329	NEUTRAL	NA	1	PARP14
TCGA.AA.A01Q.01A	3	122418230	122496530	11	0.1539	NEUTRAL	NA	2	"HSPBAP1,PARP14"
TCGA.AF.3914.01A	3	122487500	122628950	13	-0.2129	NEUTRAL	NA	3	"DIRC2,HSPBAP1,SEMA5B"
TCGA.AG.3909.01A	3	122512405	122658248	24	-0.1893	NEUTRAL	NA	3	"DIRC2,HSPBAP1,SEMA5B"
TCGA.AA.A00F.01A	3	122512405	124731450	204	-0.1381	NEUTRAL	NA	15	"ADCY5,CCDC14,DIRC2,HACD2,HEG1,HSPBAP1,ITGB5,KALRN,MUC13,MYLK,PDIA5,ROPN1,SEC22A,SEMA5B,UMPS"
TCGA.AG.A00C.01A	3	122512405	126633460	360	-0.1186	NEUTRAL	NA	32	"ADCY5,ALDH1L1,ALG1L,C3orf22,CCDC14,CCDC37,CHCHD6,CHST13,DIRC2,HACD2,HEG1,HSPBAP1,ITGB5,KALRN,KLF15,MUC13,MYLK,OSBPL11,PDIA5,ROPN1,ROPN1B,SEC22A,SEMA5B,SLC12A8,SLC41A3,SNX4,TXNRD3,TXNRD3NB,UMPS,UROC1,ZNF148,ZXDC"
TCGA.AG.4009.01A	3	122525654	122647777	21	-0.2757	NEUTRAL	NA	2	"DIRC2,SEMA5B"
TCGA.CK.5914.01A	3	122545647	123337449	76	0.113	NEUTRAL	NA	7	"ADCY5,DIRC2,HACD2,MYLK,PDIA5,SEC22A,SEMA5B"
TCGA.AA.A010.01A	3	122564583	122629671	7	0.0658	NEUTRAL	NA	2	"DIRC2,SEMA5B"
TCGA.AA.A01Q.01A	3	122628950	122785946	19	0.227	NEUTRAL	NA	2	"PDIA5,SEMA5B"
TCGA.AA.A00L.01A	3	122631652	129695501	578	-0.3291	NEUTRAL	NA	64	"ABTB1,ACAD9,ADCY5,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC14,CCDC37,CHCHD6,CHST13,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HACD2,HEG1,HMCES,IFT122,ISY1,ISY1-RAB43,ITGB5,KALRN,KBTBD12,KIAA1257,KLF15,MBD4,MCM2,MGLL,MUC13,MYLK,OSBPL11,PDIA5,PLXNA1,PLXND1,PODXL2,RAB43,RAB7A,RHO,ROPN1,ROPN1B,RPN1,RUVBL1,SEC22A,SEC61A1,SEMA5B,SLC12A8,SLC41A3,SNX4,TMCC1,TPRA1,TRH,TXNRD3,TXNRD3NB,UMPS,UROC1,ZNF148,ZXDC"
TCGA.AF.3914.01A	3	122640750	127292333	369	0.0857	NEUTRAL	NA	33	"ADCY5,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC14,CCDC37,CHCHD6,CHST13,HACD2,HEG1,ITGB5,KALRN,KLF15,MUC13,MYLK,OSBPL11,PDIA5,PLXNA1,ROPN1,ROPN1B,SEC22A,SEMA5B,SLC12A8,SLC41A3,SNX4,TPRA1,TXNRD3,TXNRD3NB,UMPS,UROC1,ZNF148,ZXDC"
TCGA.AG.4009.01A	3	122658248	124017599	100	0.2552	NEUTRAL	NA	9	"ADCY5,CCDC14,HACD2,KALRN,MYLK,PDIA5,ROPN1,SEC22A,SEMA5B"
TCGA.AG.A01W.01A	3	122691228	122838657	29	-0.3225	NEUTRAL	NA	2	"PDIA5,SEMA5B"
TCGA.EI.6514	3	122777780	183393323	16812	0.2805	NEUTRAL	NA	290	Too-Many
TCGA.AA.A01Q.01A	3	122807968	122829724	6	-0.4427	NEUTRAL	NA	1	PDIA5
TCGA.AA.A01Q.01A	3	122835025	122864898	5	0.2388	NEUTRAL	NA	1	PDIA5
TCGA.AG.A01W.01A	3	122844395	123194637	70	0.2386	NEUTRAL	NA	3	"ADCY5,PDIA5,SEC22A"
TCGA.AA.A02W.01A	3	122869064	197765401	3754	0.0652	NEUTRAL	NA	404	Too-Many
TCGA.AA.A01Q.01A	3	123008550	123166252	19	-0.0983	NEUTRAL	NA	1	ADCY5
TCGA.AA.3685	3	123082397	124467836	529	0.1875	NEUTRAL	NA	7	"ADCY5,CCDC14,HACD2,KALRN,MYLK,ROPN1,UMPS"
TCGA.AG.A01W.01A	3	123202796	123919558	90	-0.0352	NEUTRAL	NA	5	"CCDC14,HACD2,KALRN,MYLK,ROPN1"
TCGA.AA.A010.01A	3	123512487	124237191	55	0.1718	NEUTRAL	NA	4	"CCDC14,KALRN,MYLK,ROPN1"
TCGA.AG.3909.01A	3	123633597	123663668	4	0.2546	NEUTRAL	NA	1	CCDC14
TCGA.CK.5914.01A	3	123633597	123694199	14	-0.1879	NEUTRAL	NA	2	"CCDC14,ROPN1"
TCGA.AG.3909.01A	3	123665601	123699176	8	-0.4802	NEUTRAL	NA	2	"CCDC14,ROPN1"
TCGA.AZ.4684.01A	3	123679944	124209492	39	0.2418	NEUTRAL	NA	3	"CCDC14,KALRN,ROPN1"
TCGA.DM.A28M.01A	3	123679944	141274619	1287	-0.0912	NEUTRAL	NA	125	Too-Many
TCGA.AA.3509.01A	3	123679944	164709103	2157	0.1307	NEUTRAL	NA	223	Too-Many
TCGA.AA.3941	3	123682060	124223297	202	0.0887	NEUTRAL	NA	2	"KALRN,ROPN1"
TCGA.AG.A01W.01A	3	123921755	124125108	31	0.2733	NEUTRAL	NA	1	KALRN
TCGA.AG.4009.01A	3	124044785	124117493	7	-0.1777	NEUTRAL	NA	1	KALRN
TCGA.AG.A01W.01A	3	124127913	124331970	17	-0.3471	NEUTRAL	NA	1	KALRN
TCGA.AG.4009.01A	3	124128993	126676242	228	0.043	NEUTRAL	NA	22	"ALDH1L1,ALG1L,C3orf22,CCDC37,CHCHD6,CHST13,HEG1,ITGB5,KALRN,KLF15,MUC13,OSBPL11,ROPN1B,SLC12A8,SLC41A3,SNX4,TXNRD3,TXNRD3NB,UMPS,UROC1,ZNF148,ZXDC"
TCGA.AA.3844	3	124144598	143367793	5565	-0.0709	NEUTRAL	NA	137	Too-Many
TCGA.AZ.4684.01A	3	124210123	124724057	71	-0.2004	NEUTRAL	NA	5	"HEG1,ITGB5,KALRN,MUC13,UMPS"
TCGA.AG.A01W.01A	3	124347006	124821697	48	0.044	NEUTRAL	NA	6	"HEG1,ITGB5,KALRN,MUC13,SLC12A8,UMPS"
TCGA.A6.3808.01A	3	124369607	126678942	212	-0.1249	NEUTRAL	NA	22	"ALDH1L1,ALG1L,C3orf22,CCDC37,CHCHD6,CHST13,HEG1,ITGB5,KALRN,KLF15,MUC13,OSBPL11,ROPN1B,SLC12A8,SLC41A3,SNX4,TXNRD3,TXNRD3NB,UMPS,UROC1,ZNF148,ZXDC"
TCGA.CK.5914.01A	3	124374385	124449269	22	0.3216	NEUTRAL	NA	2	"KALRN,UMPS"
TCGA.AA.A010.01A	3	124412567	124567108	27	0.1015	NEUTRAL	NA	3	"ITGB5,KALRN,UMPS"
TCGA.A6.A56B	3	124453382	197833757	20478	0.0412	NEUTRAL	NA	396	Too-Many
TCGA.AG.3909.01A	3	124453893	124483191	7	-0.3654	NEUTRAL	NA	2	"ITGB5,UMPS"
TCGA.AA.A01Q.01A	3	124460967	124536416	10	0.2588	NEUTRAL	NA	2	"ITGB5,UMPS"
TCGA.CK.5914.01A	3	124483191	125195472	66	0.2255	NEUTRAL	NA	6	"HEG1,ITGB5,MUC13,SLC12A8,SNX4,ZNF148"
TCGA.AA.A00N.01A	3	124483191	125286186	80	0.3649	NEUTRAL	NA	7	"HEG1,ITGB5,MUC13,OSBPL11,SLC12A8,SNX4,ZNF148"
TCGA.AA.3685	3	124486278	167658272	11775	0.1902	NEUTRAL	NA	226	Too-Many
TCGA.AG.3906.01A	3	124536416	124728502	27	0.3554	NEUTRAL	NA	3	"HEG1,ITGB5,MUC13"
TCGA.AA.A01Q.01A	3	124626964	124746048	15	0.3199	NEUTRAL	NA	2	"HEG1,MUC13"
TCGA.AA.A010.01A	3	124635122	124653429	6	-0.0974	NEUTRAL	NA	1	MUC13
TCGA.AG.3891.01A	3	124639008	124747990	20	0.0771	NEUTRAL	NA	2	"HEG1,MUC13"
TCGA.AZ.4684.01A	3	124728502	124930090	20	0.1351	NEUTRAL	NA	2	"HEG1,SLC12A8"
TCGA.AA.A00D.01A	3	124731450	124896576	7	0.0871	NEUTRAL	NA	2	"HEG1,SLC12A8"
TCGA.AG.3906.01A	3	124731450	127327183	164	-0.0646	NEUTRAL	NA	22	"ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC37,CHCHD6,CHST13,HEG1,KLF15,MCM2,OSBPL11,PLXNA1,ROPN1B,SLC12A8,SLC41A3,SNX4,TPRA1,TXNRD3,TXNRD3NB,UROC1,ZNF148,ZXDC"
TCGA.AG.3891.01A	3	124802707	124930090	13	-0.2579	NEUTRAL	NA	1	SLC12A8
TCGA.AG.3909.01A	3	124807084	129023405	320	-0.1434	NEUTRAL	NA	42	"ABTB1,ACAD9,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC37,CHCHD6,CHST13,CNBP,COPG1,DNAJB8,EEFSEC,EFCC1,GATA2,GP9,HMCES,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,KLF15,MCM2,MGLL,OSBPL11,PLXNA1,PODXL2,RAB43,RAB7A,ROPN1B,RPN1,RUVBL1,SEC61A1,SLC12A8,SLC41A3,SNX4,TPRA1,TXNRD3,TXNRD3NB,UROC1,ZNF148,ZXDC"
TCGA.AA.3977	3	124813521	162946221	10683	-0.0061	NEUTRAL	NA	215	Too-Many
TCGA.AA.A010.01A	3	124826275	125313439	42	0.352	NEUTRAL	NA	4	"OSBPL11,SLC12A8,SNX4,ZNF148"
TCGA.AA.A00F.01A	3	124826275	136728907	752	0.0084	NEUTRAL	NA	89	"ABTB1,ACAD11,ACAD9,ACKR4,ACPP,ALDH1L1,ALG1L,ALG1L2,AMOTL2,ANAPC13,ASTE1,ATP2C1,BFSP2,C3orf22,C3orf36,C3orf56,CCDC37,CDV3,CEP63,CHCHD6,CHST13,CNBP,COL6A5,COL6A6,COPG1,CPNE4,DNAJB8,DNAJC13,EEFSEC,EFCAB12,EFCC1,EPHB1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,IL20RB,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,KLF15,KY,MBD4,MCM2,MGLL,MRPL3,MSL2,NCK1,NEK11,NPHP3,NUDT16,OSBPL11,PCCB,PIK3R4,PLXNA1,PLXND1,PODXL2,PPP2R3A,RAB43,RAB6B,RAB7A,RHO,ROPN1B,RPN1,RUVBL1,RYK,SEC61A1,SLC12A8,SLC35G2,SLC41A3,SLCO2A1,SNX4,SRPRB,STAG1,TF,TMCC1,TMEM108,TOPBP1,TPRA1,TRH,TXNRD3,TXNRD3NB,UBA5,UROC1,ZNF148,ZXDC"
TCGA.AG.A01W.01A	3	124828306	124941419	25	-0.2994	NEUTRAL	NA	1	SLC12A8
TCGA.AG.3891.01A	3	124951218	125831578	56	-0.0588	NEUTRAL	NA	7	"ALDH1L1,ALG1L,OSBPL11,ROPN1B,SLC41A3,SNX4,ZNF148"
TCGA.AA.A00Q.01A	3	124951218	129695501	375	-0.3316	NEUTRAL	NA	50	"ABTB1,ACAD9,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC37,CHCHD6,CHST13,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,KLF15,MBD4,MCM2,MGLL,OSBPL11,PLXNA1,PLXND1,PODXL2,RAB43,RAB7A,RHO,ROPN1B,RPN1,RUVBL1,SEC61A1,SLC41A3,SNX4,TMCC1,TPRA1,TRH,TXNRD3,TXNRD3NB,UROC1,ZNF148,ZXDC"
TCGA.AG.A01W.01A	3	124953867	125157582	11	0.1772	NEUTRAL	NA	1	ZNF148
TCGA.BM.6198	3	124981853	165637528	11166	-0.42805	NEUTRAL	NA	217	Too-Many
TCGA.AZ.4684.01A	3	124997931	127541075	195	-0.0653	NEUTRAL	NA	23	"ABTB1,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC37,CHCHD6,CHST13,KLF15,MCM2,MGLL,OSBPL11,PLXNA1,PODXL2,ROPN1B,SLC41A3,SNX4,TPRA1,TXNRD3,TXNRD3NB,UROC1,ZNF148,ZXDC"
TCGA.AG.A01W.01A	3	125157842	125176890	6	-0.3572	NEUTRAL	NA	1	SNX4
TCGA.AG.A01W.01A	3	125178354	125598099	20	0.0863	NEUTRAL	NA	2	"OSBPL11,SNX4"
TCGA.CK.5914.01A	3	125199036	129188141	347	-0.3451	NEUTRAL	NA	44	"ABTB1,ACAD9,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC37,CHCHD6,CHST13,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,KLF15,MBD4,MCM2,MGLL,OSBPL11,PLXNA1,PODXL2,RAB43,RAB7A,ROPN1B,RPN1,RUVBL1,SEC61A1,SLC41A3,SNX4,TPRA1,TXNRD3,TXNRD3NB,UROC1,ZXDC"
TCGA.AA.A00D.01A	3	125295001	125725213	12	-0.1317	NEUTRAL	NA	4	"ALG1L,OSBPL11,ROPN1B,SLC41A3"
TCGA.AZ.6607	3	125318597	197833757	20279	-0.0303	NEUTRAL	NA	388	Too-Many
TCGA.AA.A02Y	3	125547911	197833757	20275	0.0051	NEUTRAL	NA	388	Too-Many
TCGA.AU.6004	3	125593348	129760621	1068	-0.1128	NEUTRAL	NA	47	"ABTB1,ACAD9,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC37,CHCHD6,CHST13,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,KLF15,MBD4,MCM2,MGLL,PLXNA1,PLXND1,PODXL2,RAB43,RAB7A,RHO,ROPN1B,RPN1,RUVBL1,SEC61A1,SLC41A3,TMCC1,TPRA1,TRH,TXNRD3,TXNRD3NB,UROC1,ZXDC"
TCGA.AG.A01W.01A	3	125599631	125624298	11	-0.329	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	3	125656676	127346040	212	-0.0594	NEUTRAL	NA	16	"ALDH1L1,C3orf22,C3orf56,CCDC37,CHCHD6,CHST13,KLF15,MCM2,PLXNA1,ROPN1B,SLC41A3,TPRA1,TXNRD3,TXNRD3NB,UROC1,ZXDC"
TCGA.AA.A01Q.01A	3	125822573	125831578	5	-0.3897	NEUTRAL	NA	1	ALDH1L1
TCGA.AA.A01Q.01A	3	125833363	126062521	18	0.1639	NEUTRAL	NA	2	"ALDH1L1,KLF15"
TCGA.AG.3891.01A	3	125833363	126184949	37	-0.4204	NEUTRAL	NA	4	"ALDH1L1,CCDC37,KLF15,ZXDC"
TCGA.AA.A00N.01A	3	126062521	126208072	28	-0.436	NEUTRAL	NA	4	"CCDC37,KLF15,UROC1,ZXDC"
TCGA.AA.A00D.01A	3	126062521	126707508	47	-0.3424	NEUTRAL	NA	10	"C3orf22,CCDC37,CHCHD6,CHST13,KLF15,PLXNA1,TXNRD3,TXNRD3NB,UROC1,ZXDC"
TCGA.AA.A01Q.01A	3	126070645	126138432	9	-0.4434	NEUTRAL	NA	2	"CCDC37,KLF15"
TCGA.AA.A010.01A	3	126132879	126160577	13	0.2153	NEUTRAL	NA	2	"CCDC37,ZXDC"
TCGA.AA.A02E.01A	3	126189691	130313075	285	-0.1491	NEUTRAL	NA	44	"ABTB1,ACAD9,ALG1L2,C3orf22,C3orf56,CHCHD6,CHST13,CNBP,COL6A5,COL6A6,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MCM2,MGLL,PLXNA1,PLXND1,PODXL2,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TPRA1,TRH,TXNRD3,TXNRD3NB,UROC1,ZXDC"
TCGA.AG.3611.01A	3	126201136	126272103	22	-0.429	NEUTRAL	NA	3	"C3orf22,CHST13,UROC1"
TCGA.AG.3891.01A	3	126206982	126222786	9	-0.3008	NEUTRAL	NA	1	UROC1
TCGA.AA.A00N.01A	3	126211213	126678942	28	0.2141	NEUTRAL	NA	6	"C3orf22,CHCHD6,CHST13,TXNRD3,TXNRD3NB,UROC1"
TCGA.AG.3891.01A	3	126255054	133193715	551	-0.0561	NEUTRAL	NA	57	"ABTB1,ACAD11,ACAD9,ACKR4,ACPP,ALG1L2,ASTE1,ATP2C1,BFSP2,C3orf22,C3orf56,CHCHD6,CHST13,CNBP,COL6A5,COL6A6,COPG1,CPNE4,DNAJB8,DNAJC13,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MCM2,MGLL,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,PLXNA1,PLXND1,PODXL2,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TMEM108,TPRA1,TRH,TXNRD3,TXNRD3NB,UBA5"
TCGA.AG.3611.01A	3	126290785	135768053	581	0.1075	NEUTRAL	NA	69	"ABTB1,ACAD11,ACAD9,ACKR4,ACPP,ALG1L2,AMOTL2,ANAPC13,ASTE1,ATP2C1,BFSP2,C3orf36,C3orf56,CDV3,CEP63,CHCHD6,CNBP,COL6A5,COL6A6,COPG1,CPNE4,DNAJB8,DNAJC13,EEFSEC,EFCAB12,EFCC1,EPHB1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,KY,MBD4,MCM2,MGLL,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,PLXNA1,PLXND1,PODXL2,PPP2R3A,RAB43,RAB6B,RAB7A,RHO,RPN1,RUVBL1,RYK,SEC61A1,SLCO2A1,SRPRB,TF,TMCC1,TMEM108,TOPBP1,TPRA1,TRH,TXNRD3,TXNRD3NB,UBA5"
TCGA.AA.A01F.01A	3	126633460	126752712	25	0.0251	NEUTRAL	NA	2	"CHCHD6,PLXNA1"
TCGA.AA.A01Q.01A	3	126633460	127318124	36	-0.3212	NEUTRAL	NA	5	"C3orf56,CHCHD6,MCM2,PLXNA1,TPRA1"
TCGA.AG.A00C.01A	3	126676242	127340459	35	0.2623	NEUTRAL	NA	5	"C3orf56,CHCHD6,MCM2,PLXNA1,TPRA1"
TCGA.A6.3810.01A	3	126678942	126741532	18	-0.0906	NEUTRAL	NA	2	"CHCHD6,PLXNA1"
TCGA.AG.4009.01A	3	126707508	127702898	62	-0.3492	NEUTRAL	NA	8	"ABTB1,C3orf56,KBTBD12,MCM2,MGLL,PLXNA1,PODXL2,TPRA1"
TCGA.AA.A00D.01A	3	126710188	127327628	33	0.035	NEUTRAL	NA	4	"C3orf56,MCM2,PLXNA1,TPRA1"
TCGA.AA.A010.01A	3	126746754	127323419	17	-0.2955	NEUTRAL	NA	4	"C3orf56,MCM2,PLXNA1,TPRA1"
TCGA.A6.3810.01A	3	126746754	128852870	150	0.2084	NEUTRAL	NA	22	"ABTB1,ACAD9,C3orf56,DNAJB8,EEFSEC,EFCC1,GATA2,GP9,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MCM2,MGLL,PLXNA1,PODXL2,RAB43,RAB7A,RPN1,RUVBL1,SEC61A1,TPRA1"
TCGA.5M.AAT4	3	126757504	174829686	13338	0.1316	NEUTRAL	NA	234	Too-Many
TCGA.AY.A71X	3	126771612	169200472	11553	0.0077	NEUTRAL	NA	207	Too-Many
TCGA.AA.A00N.01A	3	127292333	127295478	5	0.3094	NEUTRAL	NA	1	TPRA1
TCGA.AA.A01F.01A	3	127292333	195479875	2742	-0.3379	NEUTRAL	NA	345	Too-Many
TCGA.AF.3914.01A	3	127293967	127806497	59	-0.3471	NEUTRAL	NA	8	"ABTB1,KBTBD12,MCM2,MGLL,PODXL2,RUVBL1,SEC61A1,TPRA1"
TCGA.AA.A02H.01A	3	127298536	129811927	221	-0.2922	NEUTRAL	NA	33	"ABTB1,ACAD9,ALG1L2,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MCM2,MGLL,PLXND1,PODXL2,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TPRA1,TRH"
TCGA.AA.A01Q.01A	3	127323419	127387233	17	0.1049	NEUTRAL	NA	2	"MCM2,PODXL2"
TCGA.AG.A023.01A	3	127327183	129810892	219	-0.2557	NEUTRAL	NA	32	"ABTB1,ACAD9,ALG1L2,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MCM2,MGLL,PLXND1,PODXL2,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TRH"
TCGA.AA.A00D.01A	3	127334664	130399774	233	-0.3334	NEUTRAL	NA	35	"ABTB1,ACAD9,ALG1L2,CNBP,COL6A5,COL6A6,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MCM2,MGLL,PIK3R4,PLXND1,PODXL2,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TRH"
TCGA.AG.A01W.01A	3	127348313	127676475	42	0.2562	NEUTRAL	NA	4	"ABTB1,KBTBD12,MGLL,PODXL2"
TCGA.AG.A00C.01A	3	127358036	127702898	24	-0.0229	NEUTRAL	NA	4	"ABTB1,KBTBD12,MGLL,PODXL2"
TCGA.A6.3808.01A	3	127358036	130116426	261	-0.2865	NEUTRAL	NA	32	"ABTB1,ACAD9,ALG1L2,CNBP,COL6A5,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MGLL,PLXND1,PODXL2,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TRH"
TCGA.AG.3598	3	127364314	180491013	14658	0.0112	NEUTRAL	NA	246	Too-Many
TCGA.AA.A01Q.01A	3	127387917	127642348	13	-0.3186	NEUTRAL	NA	4	"ABTB1,KBTBD12,MGLL,PODXL2"
TCGA.AG.3906.01A	3	127398779	127771613	15	0.1144	NEUTRAL	NA	4	"ABTB1,KBTBD12,MGLL,SEC61A1"
TCGA.AG.A01L.01A	3	127410994	133583357	538	0.1589	NEUTRAL	NA	51	"ACAD11,ACAD9,ACKR4,ACPP,ALG1L2,ASTE1,ATP2C1,BFSP2,CDV3,CNBP,COL6A5,COL6A6,COPG1,CPNE4,DNAJB8,DNAJC13,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MGLL,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,PLXND1,RAB43,RAB6B,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,SRPRB,TF,TMCC1,TMEM108,TOPBP1,TRH,UBA5"
TCGA.AA.A010.01A	3	127413801	127702898	13	-0.311	NEUTRAL	NA	2	"KBTBD12,MGLL"
TCGA.AA.A02K.01A	3	127429407	172058857	2202	-0.0943	NEUTRAL	NA	222	Too-Many
TCGA.AA.A01C.01A	3	127540490	129200351	156	-0.3402	NEUTRAL	NA	23	"ACAD9,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MGLL,RAB43,RAB7A,RPN1,RUVBL1,SEC61A1"
TCGA.AA.A01Q.01A	3	127646590	129207073	144	0.322	NEUTRAL	NA	22	"ACAD9,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,RAB43,RAB7A,RPN1,RUVBL1,SEC61A1"
TCGA.AA.3850	3	127660096	129946917	445	0.34735	NEUTRAL	NA	28	"ACAD9,ALG1L2,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,PLXND1,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TRH"
TCGA.AZ.4684.01A	3	127681994	130098209	230	-0.037	NEUTRAL	NA	29	"ACAD9,ALG1L2,CNBP,COL6A5,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,PLXND1,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TRH"
TCGA.AG.A01W.01A	3	127709205	128218427	29	-0.0723	NEUTRAL	NA	5	"DNAJB8,EEFSEC,GATA2,RUVBL1,SEC61A1"
TCGA.AG.A00C.01A	3	127785750	129262009	165	0.028	NEUTRAL	NA	22	"ACAD9,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KIAA1257,MBD4,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1"
TCGA.AA.A00N.01A	3	127786767	127838117	12	-0.2196	NEUTRAL	NA	2	"RUVBL1,SEC61A1"
TCGA.AG.4009.01A	3	127806497	127816116	2	-0.4319	NEUTRAL	NA	1	RUVBL1
TCGA.AG.3906.01A	3	127816116	128631312	53	0.0429	NEUTRAL	NA	7	"ACAD9,DNAJB8,EEFSEC,GATA2,RAB7A,RPN1,RUVBL1"
TCGA.AF.3914.01A	3	127816116	132166663	348	0.0711	NEUTRAL	NA	37	"ACAD9,ACPP,ALG1L2,ASTE1,ATP2C1,CNBP,COL6A5,COL6A6,COPG1,CPNE4,DNAJB8,DNAJC13,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KIAA1257,MBD4,MRPL3,NEK11,NUDT16,PIK3R4,PLXND1,RAB43,RAB7A,RHO,RPN1,RUVBL1,TMCC1,TRH"
TCGA.AG.4009.01A	3	127817689	128532121	35	0.0119	NEUTRAL	NA	6	"DNAJB8,EEFSEC,GATA2,RAB7A,RPN1,RUVBL1"
TCGA.AA.A010.01A	3	128126911	128363693	17	-0.3939	NEUTRAL	NA	4	"DNAJB8,EEFSEC,GATA2,RPN1"
TCGA.AA.A00N.01A	3	128181363	128344350	10	-0.3127	NEUTRAL	NA	3	"DNAJB8,GATA2,RPN1"
TCGA.F4.6460	3	128312068	171997538	11934	0.0782	NEUTRAL	NA	215	Too-Many
TCGA.A6.6653	3	128336220	129746626	241	-0.0292	NEUTRAL	NA	21	"ACAD9,CNBP,COPG1,EFCAB12,EFCC1,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KIAA1257,MBD4,PLXND1,RAB43,RAB7A,RHO,RPN1,TMCC1,TRH"
TCGA.CM.6163	3	128391625	196506152	19132	0.0299	NEUTRAL	NA	349	Too-Many
TCGA.AA.A00N.01A	3	128525168	128631312	21	0.3686	NEUTRAL	NA	2	"ACAD9,RAB7A"
TCGA.AA.3815.01A	3	128621336	160955889	1747	-0.0402	NEUTRAL	NA	181	Too-Many
TCGA.AG.4009.01A	3	128631312	128707559	7	-0.2212	NEUTRAL	NA	2	"ACAD9,KIAA1257"
TCGA.AG.3906.01A	3	128711836	128813821	8	0.023	NEUTRAL	NA	5	"EFCC1,GP9,ISY1-RAB43,KIAA1257,RAB43"
TCGA.AA.A010.01A	3	128720465	128877318	20	-0.2333	NEUTRAL	NA	5	"EFCC1,GP9,ISY1,ISY1-RAB43,RAB43"
TCGA.AA.A00N.01A	3	128720465	128991055	43	-0.3141	NEUTRAL	NA	7	"CNBP,COPG1,EFCC1,GP9,ISY1,ISY1-RAB43,RAB43"
TCGA.AG.A01W.01A	3	128775008	128872951	34	-0.0918	NEUTRAL	NA	4	"GP9,ISY1,ISY1-RAB43,RAB43"
TCGA.AG.4009.01A	3	128780576	128849337	6	-0.2794	NEUTRAL	NA	4	"GP9,ISY1,ISY1-RAB43,RAB43"
TCGA.AG.4009.01A	3	128852870	128991055	27	0.1267	NEUTRAL	NA	4	"CNBP,COPG1,ISY1,ISY1-RAB43"
TCGA.A6.3810.01A	3	128853623	128877912	6	-0.1695	NEUTRAL	NA	2	"ISY1,ISY1-RAB43"
TCGA.AG.3906.01A	3	128859159	129007655	31	0.0729	NEUTRAL	NA	5	"CNBP,COPG1,HMCES,ISY1,ISY1-RAB43"
TCGA.A6.3810.01A	3	128879717	138461363	762	0.2947	NEUTRAL	NA	64	"A4GNT,ACAD11,ACKR4,ACPP,ALG1L2,AMOTL2,ANAPC13,ARMC8,ASTE1,ATP2C1,BFSP2,C3orf36,CDV3,CEP63,CEP70,CLDN18,CNBP,COL6A5,COL6A6,COPG1,CPNE4,DBR1,DNAJC13,DZIP1L,EFCAB12,EPHB1,ESYT3,FAIM,H1FOO,H1FX,HMCES,IFT122,IL20RB,ISY1,ISY1-RAB43,KY,MBD4,MRAS,MRPL3,MSL2,NCK1,NEK11,NME9,NPHP3,NUDT16,PCCB,PIK3CB,PIK3R4,PLXND1,PPP2R3A,RAB6B,RHO,RYK,SLC35G2,SLCO2A1,SOX14,SRPRB,STAG1,TF,TMCC1,TMEM108,TOPBP1,TRH,UBA5"
TCGA.AG.A01W.01A	3	128893685	162427681	1838	0.1068	NEUTRAL	NA	176	Too-Many
TCGA.AA.A010.01A	3	128979454	128998528	14	-0.0728	NEUTRAL	NA	2	"COPG1,HMCES"
TCGA.AG.4009.01A	3	128991613	129120399	12	-0.2666	NEUTRAL	NA	4	"COPG1,EFCAB12,H1FX,HMCES"
TCGA.AG.4009.01A	3	129121298	129304747	74	0.2647	NEUTRAL	NA	6	"EFCAB12,H1FOO,IFT122,MBD4,PLXND1,RHO"
TCGA.AG.3906.01A	3	129129954	132179864	235	-0.0454	NEUTRAL	NA	20	"ACPP,ALG1L2,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,DNAJC13,EFCAB12,H1FOO,IFT122,MBD4,MRPL3,NEK11,NUDT16,PIK3R4,PLXND1,RHO,TMCC1,TRH"
TCGA.AG.3909.01A	3	129150286	129188141	15	-0.0101	NEUTRAL	NA	2	"IFT122,MBD4"
TCGA.AA.A00N.01A	3	129150286	129252424	42	0.1711	NEUTRAL	NA	3	"IFT122,MBD4,RHO"
TCGA.AA.A01C.01A	3	129202281	195969405	3075	0.0561	NEUTRAL	NA	324	Too-Many
TCGA.AG.3909.01A	3	129223115	129267843	16	0.0247	NEUTRAL	NA	3	"H1FOO,IFT122,RHO"
TCGA.CK.5914.01A	3	129223115	129324164	46	-0.4908	NEUTRAL	NA	4	"H1FOO,IFT122,PLXND1,RHO"
TCGA.AA.A01Q.01A	3	129233183	129269931	15	0.0349	NEUTRAL	NA	3	"H1FOO,IFT122,RHO"
TCGA.AA.A00N.01A	3	129262009	129305404	30	-0.4475	NEUTRAL	NA	2	"H1FOO,PLXND1"
TCGA.AA.A010.01A	3	129269522	129294260	21	-0.2528	NEUTRAL	NA	2	"H1FOO,PLXND1"
TCGA.AG.A00C.01A	3	129269522	129302931	21	0.3621	NEUTRAL	NA	2	"H1FOO,PLXND1"
TCGA.AG.3909.01A	3	129297133	131189964	128	0.3018	NEUTRAL	NA	12	"ALG1L2,ASTE1,ATP2C1,COL6A5,COL6A6,MRPL3,NEK11,NUDT16,PIK3R4,PLXND1,TMCC1,TRH"
TCGA.AG.A00C.01A	3	129304747	132086521	156	-0.1609	NEUTRAL	NA	14	"ACPP,ALG1L2,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,MRPL3,NEK11,NUDT16,PIK3R4,PLXND1,TMCC1,TRH"
TCGA.AA.A00N.01A	3	129308172	130103629	17	0.1913	NEUTRAL	NA	5	"ALG1L2,COL6A5,PLXND1,TMCC1,TRH"
TCGA.F5.6812	3	129336744	197833757	19269	0.0341	NEUTRAL	NA	343	Too-Many
TCGA.AG.4009.01A	3	129370304	132166663	157	0.0298	NEUTRAL	NA	14	"ACPP,ALG1L2,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,DNAJC13,MRPL3,NEK11,NUDT16,PIK3R4,TMCC1,TRH"
TCGA.AG.A015.01A	3	129370304	184064374	2385	-0.1697	NEUTRAL	NA	248	Too-Many
TCGA.AA.A010.01A	3	129389171	130120556	19	0.3152	NEUTRAL	NA	4	"ALG1L2,COL6A5,TMCC1,TRH"
TCGA.G4.6626	3	129761123	129892968	7	-0.3876	NEUTRAL	NA	1	ALG1L2
TCGA.AA.A00L.01A	3	129814859	130399774	21	0.0843	NEUTRAL	NA	4	"ALG1L2,COL6A5,COL6A6,PIK3R4"
TCGA.AA.A00Q.01A	3	129815959	130399774	13	0.1564	NEUTRAL	NA	4	"ALG1L2,COL6A5,COL6A6,PIK3R4"
TCGA.AD.6888	3	129892968	173228795	12093	0.2769	NEUTRAL	NA	199	Too-Many
TCGA.CI.6623	3	129892968	174898956	12633	0.0397	NEUTRAL	NA	200	Too-Many
TCGA.AD.6901	3	129892968	175067437	12680	0.065	NEUTRAL	NA	200	Too-Many
TCGA.A6.3809	3	129892968	197833757	17564	0.0266	NEUTRAL	NA	340	Too-Many
TCGA.AA.3692	3	129892968	197833757	19224	-0.0594	NEUTRAL	NA	340	Too-Many
TCGA.AF.6136	3	129892968	197833757	19187	0.0308	NEUTRAL	NA	340	Too-Many
TCGA.AG.3581	3	129892968	197833757	19212	0.0204	NEUTRAL	NA	340	Too-Many
TCGA.CA.6719	3	129892968	197833757	19146	0.1054	NEUTRAL	NA	340	Too-Many
TCGA.G4.6295	3	129892968	197833757	19216	0.0304	NEUTRAL	NA	340	Too-Many
TCGA.EI.6885	3	129920257	145689069	4677	0.2435	NEUTRAL	NA	81	"A4GNT,ACAD11,ACKR4,ACPP,AMOTL2,ANAPC13,ARMC8,ASTE1,ATP1B3,ATP2C1,ATR,BFSP2,C3orf36,C3orf58,CDV3,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COL6A5,COL6A6,COPB2,CPNE4,DBR1,DNAJC13,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPL3,MRPS22,MSL2,NCK1,NEK11,NME9,NMNAT3,NPHP3,NUDT16,PAQR9,PCCB,PCOLCE2,PIK3CB,PIK3R4,PLS1,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLC9A9,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TMEM108,TOPBP1,TRIM42,TRPC1,U2SURP,UBA5,XRN1,ZBTB38"
TCGA.AG.3728	3	129920257	197833757	19226	-0.0255	NEUTRAL	NA	340	Too-Many
TCGA.AG.3881	3	129920257	197833757	19219	0.0584	NEUTRAL	NA	340	Too-Many
TCGA.AH.6643	3	129920257	197833757	19178	0.0093	NEUTRAL	NA	340	Too-Many
TCGA.G4.6314	3	129920257	197833757	19216	0.2549	NEUTRAL	NA	340	Too-Many
TCGA.F4.6463	3	129933245	162908210	9437	0.016	NEUTRAL	NA	163	Too-Many
TCGA.AU.6004	3	129933245	197833757	19087	0.0279	NEUTRAL	NA	340	Too-Many
TCGA.G4.6297	3	129933245	197833757	19212	0.135	NEUTRAL	NA	340	Too-Many
TCGA.A6.6653	3	129938055	133125596	1016	0.0159	NEUTRAL	NA	17	"ACAD11,ACKR4,ACPP,ASTE1,ATP2C1,BFSP2,COL6A5,COL6A6,CPNE4,DNAJC13,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,TMEM108,UBA5"
TCGA.AA.3850	3	129948429	132997936	966	-0.36475	NEUTRAL	NA	16	"ACAD11,ACKR4,ACPP,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,DNAJC13,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,TMEM108,UBA5"
TCGA.AA.3982	3	129948429	133000229	964	-0.2562	NEUTRAL	NA	16	"ACAD11,ACKR4,ACPP,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,DNAJC13,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,TMEM108,UBA5"
TCGA.AA.3941	3	129948429	133015903	972	-0.3046	NEUTRAL	NA	16	"ACAD11,ACKR4,ACPP,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,DNAJC13,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,TMEM108,UBA5"
TCGA.AA.A02H.01A	3	130095042	160944995	1501	0.1537	NEUTRAL	NA	161	Too-Many
TCGA.A6.3808.01A	3	130119836	141724193	755	0.2613	NEUTRAL	NA	70	"A4GNT,ACAD11,ACKR4,ACPP,AMOTL2,ANAPC13,ARMC8,ASTE1,ATP1B3,ATP2C1,BFSP2,C3orf36,CDV3,CEP63,CEP70,CLDN18,CLSTN2,COL6A5,COL6A6,COPB2,CPNE4,DBR1,DNAJC13,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GRK7,IL20RB,KY,MRAS,MRPL3,MRPS22,MSL2,NCK1,NEK11,NME9,NMNAT3,NPHP3,NUDT16,PCCB,PIK3CB,PIK3R4,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TMEM108,TOPBP1,TRIM42,UBA5,ZBTB38"
TCGA.AA.A010.01A	3	130122379	130189677	23	-0.4593	NEUTRAL	NA	1	COL6A5
TCGA.AG.A008.01A	3	130158963	186501313	2648	0.0982	NEUTRAL	NA	268	Too-Many
TCGA.AG.A023.01A	3	130158963	194150754	2854	0.0217	NEUTRAL	NA	303	Too-Many
TCGA.CK.5914.01A	3	130317185	130437216	31	0.2632	NEUTRAL	NA	2	"COL6A6,PIK3R4"
TCGA.AA.A02E.01A	3	130317185	183493652	2186	0.1756	NEUTRAL	NA	226	Too-Many
TCGA.AA.A010.01A	3	130327678	130427133	26	-0.032	NEUTRAL	NA	2	"COL6A6,PIK3R4"
TCGA.AA.3930.01A	3	130361652	146166965	918	-0.009	NEUTRAL	NA	83	"A4GNT,ACAD11,ACKR4,ACPP,AMOTL2,ANAPC13,ARMC8,ASTE1,ATP1B3,ATP2C1,ATR,BFSP2,C3orf36,C3orf58,CDV3,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COL6A6,COPB2,CPNE4,DBR1,DNAJC13,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPL3,MRPS22,MSL2,NCK1,NEK11,NME9,NMNAT3,NPHP3,NUDT16,PAQR9,PCCB,PCOLCE2,PIK3CB,PIK3R4,PLOD2,PLS1,PLSCR2,PLSCR4,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLC9A9,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TMEM108,TOPBP1,TRIM42,TRPC1,U2SURP,UBA5,XRN1,ZBTB38"
TCGA.AG.A016.01A	3	130377489	131208776	77	-0.0947	NEUTRAL	NA	7	"ASTE1,ATP2C1,COL6A6,MRPL3,NEK11,NUDT16,PIK3R4"
TCGA.AG.A00Y.01A	3	130377489	182740157	2110	-0.0512	NEUTRAL	NA	220	Too-Many
TCGA.AA.A00Q.01A	3	130400287	134277960	295	-0.3345	NEUTRAL	NA	26	"ACAD11,ACKR4,ACPP,AMOTL2,ANAPC13,ASTE1,ATP2C1,BFSP2,C3orf36,CDV3,CEP63,CPNE4,DNAJC13,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,RAB6B,RYK,SLCO2A1,SRPRB,TF,TMEM108,TOPBP1,UBA5"
TCGA.AA.A00L.01A	3	130400287	161220773	1323	-0.5086	NEUTRAL	NA	161	Too-Many
TCGA.CK.5914.01A	3	130649233	131208776	53	0.1217	NEUTRAL	NA	5	"ASTE1,ATP2C1,MRPL3,NEK11,NUDT16"
TCGA.AA.A010.01A	3	130711731	132165260	68	0.1369	NEUTRAL	NA	8	"ACPP,ASTE1,ATP2C1,CPNE4,DNAJC13,MRPL3,NEK11,NUDT16"
TCGA.AA.3688	3	130923833	197833757	18962	0.0041	NEUTRAL	NA	335	Too-Many
TCGA.AF.3913	3	131203872	131240465	5	-0.2675	NEUTRAL	NA	1	MRPL3
TCGA.AG.3909.01A	3	131206457	131253992	6	-0.4047	NEUTRAL	NA	2	"CPNE4,MRPL3"
TCGA.AG.A016.01A	3	131253992	159706792	1324	-0.0421	NEUTRAL	NA	144	Too-Many
TCGA.AG.A01Y	3	132030109	197833757	18478	0.036	NEUTRAL	NA	331	Too-Many
TCGA.CK.5914.01A	3	132056253	132172869	14	0.0755	NEUTRAL	NA	2	"ACPP,DNAJC13"
TCGA.DY.A1DC	3	132075416	132086824	3	-0.1502	NEUTRAL	NA	1	ACPP
TCGA.AA.A00O.01A	3	132075488	143411987	747	-0.4085	NEUTRAL	NA	71	"A4GNT,ACAD11,ACKR4,ACPP,AMOTL2,ANAPC13,ARMC8,ATP1B3,ATR,BFSP2,C3orf36,CDV3,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COPB2,DBR1,DNAJC13,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPS22,MSL2,NCK1,NME9,NMNAT3,NPHP3,PAQR9,PCCB,PCOLCE2,PIK3CB,PLS1,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLC9A9,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TMEM108,TOPBP1,TRIM42,TRPC1,U2SURP,UBA5,XRN1,ZBTB38"
TCGA.AG.3909.01A	3	132086521	132175040	9	-0.117	NEUTRAL	NA	2	"ACPP,DNAJC13"
TCGA.AG.A00C.01A	3	132153327	132196581	19	0.3453	NEUTRAL	NA	1	DNAJC13
TCGA.AA.A01Q.01A	3	132165260	132201032	21	0.1419	NEUTRAL	NA	1	DNAJC13
TCGA.AA.A00D.01A	3	132166169	132215320	29	-0.2107	NEUTRAL	NA	1	DNAJC13
TCGA.AG.3909.01A	3	132198004	132207741	7	-0.3037	NEUTRAL	NA	1	DNAJC13
TCGA.AG.A00C.01A	3	132198004	133368247	122	0.0093	NEUTRAL	NA	9	"ACAD11,ACKR4,BFSP2,CDV3,DNAJC13,NPHP3,TMEM108,TOPBP1,UBA5"
TCGA.AG.3906.01A	3	132201032	138477974	438	-0.0523	NEUTRAL	NA	39	"A4GNT,ACAD11,ACKR4,AMOTL2,ANAPC13,ARMC8,BFSP2,C3orf36,CDV3,CEP63,CEP70,CLDN18,DBR1,DNAJC13,DZIP1L,EPHB1,ESYT3,FAIM,IL20RB,KY,MRAS,MSL2,NCK1,NME9,NPHP3,PCCB,PIK3CB,PPP2R3A,RAB6B,RYK,SLC35G2,SLCO2A1,SOX14,SRPRB,STAG1,TF,TMEM108,TOPBP1,UBA5"
TCGA.CK.5914.01A	3	132203378	132213875	7	-0.1317	NEUTRAL	NA	1	DNAJC13
TCGA.AG.4009.01A	3	132207125	132424534	76	-0.138	NEUTRAL	NA	5	"ACAD11,ACKR4,DNAJC13,NPHP3,UBA5"
TCGA.AA.A00N.01A	3	132209724	132217930	6	0.0388	NEUTRAL	NA	1	DNAJC13
TCGA.D5.5540	3	132213576	145446932	3842	0.003	NEUTRAL	NA	71	"A4GNT,ACAD11,ACKR4,AMOTL2,ANAPC13,ARMC8,ATP1B3,ATR,BFSP2,C3orf36,C3orf58,CDV3,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COPB2,DBR1,DNAJC13,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPS22,MSL2,NCK1,NME9,NMNAT3,NPHP3,PAQR9,PCCB,PCOLCE2,PIK3CB,PLS1,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLC9A9,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TMEM108,TOPBP1,TRIM42,TRPC1,U2SURP,UBA5,XRN1,ZBTB38"
TCGA.CK.5914.01A	3	132215320	132278627	22	0.3132	NEUTRAL	NA	2	"ACAD11,DNAJC13"
TCGA.AA.A010.01A	3	132215320	132361504	41	0.0015	NEUTRAL	NA	3	"ACAD11,ACKR4,DNAJC13"
TCGA.AF.3914.01A	3	132221095	183861836	2141	0.0263	NEUTRAL	NA	224	Too-Many
TCGA.CK.5914.01A	3	132319205	132338273	7	0.3661	NEUTRAL	NA	2	"ACAD11,ACKR4"
TCGA.CK.5914.01A	3	132345493	132350137	4	-0.0478	NEUTRAL	NA	1	ACAD11
TCGA.AA.A00N.01A	3	132349229	132360789	4	0.0428	NEUTRAL	NA	1	ACAD11
TCGA.AA.A00D.01A	3	132349229	139102123	357	-0.4251	NEUTRAL	NA	44	"A4GNT,ACAD11,AMOTL2,ANAPC13,ARMC8,BFSP2,C3orf36,CDV3,CEP63,CEP70,CLDN18,COPB2,DBR1,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,IL20RB,KY,MRAS,MRPS22,MSL2,NCK1,NME9,NPHP3,PCCB,PIK3CB,PPP2R3A,PRR23A,PRR23B,PRR23C,RAB6B,RYK,SLC35G2,SLCO2A1,SOX14,SRPRB,STAG1,TF,TMEM108,TOPBP1,UBA5"
TCGA.AG.3909.01A	3	132358296	132394390	12	-0.4943	NEUTRAL	NA	2	"ACAD11,UBA5"
TCGA.CK.5914.01A	3	132358296	133114656	45	-0.4044	NEUTRAL	NA	4	"ACAD11,NPHP3,TMEM108,UBA5"
TCGA.AA.A010.01A	3	132387642	132423002	26	-0.1186	NEUTRAL	NA	2	"NPHP3,UBA5"
TCGA.AA.A00N.01A	3	132395230	132405932	7	-0.1665	NEUTRAL	NA	2	"NPHP3,UBA5"
TCGA.AG.3909.01A	3	132395230	132426893	22	-2.00E-04	NEUTRAL	NA	2	"NPHP3,UBA5"
TCGA.AA.A00N.01A	3	132411476	132423002	9	-0.2402	NEUTRAL	NA	1	NPHP3
TCGA.AZ.4684.01A	3	132415525	164709103	1337	0.2129	NEUTRAL	NA	150	Too-Many
TCGA.AG.4009.01A	3	132948089	133667688	82	-0.1324	NEUTRAL	NA	9	"BFSP2,C3orf36,CDV3,RAB6B,SLCO2A1,SRPRB,TF,TMEM108,TOPBP1"
TCGA.AA.3850	3	133000229	143163168	2922	0.09205	NEUTRAL	NA	65	"A4GNT,AMOTL2,ANAPC13,ARMC8,ATP1B3,ATR,BFSP2,C3orf36,CDV3,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COPB2,DBR1,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPS22,MSL2,NCK1,NME9,NMNAT3,PAQR9,PCCB,PCOLCE2,PIK3CB,PLS1,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLC9A9,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TMEM108,TOPBP1,TRIM42,TRPC1,U2SURP,XRN1,ZBTB38"
TCGA.AA.3982	3	133000366	142986036	2845	0.0631	NEUTRAL	NA	65	"A4GNT,AMOTL2,ANAPC13,ARMC8,ATP1B3,ATR,BFSP2,C3orf36,CDV3,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COPB2,DBR1,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPS22,MSL2,NCK1,NME9,NMNAT3,PAQR9,PCCB,PCOLCE2,PIK3CB,PLS1,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLC9A9,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TMEM108,TOPBP1,TRIM42,TRPC1,U2SURP,XRN1,ZBTB38"
TCGA.AA.3941	3	133020949	137202648	1145	0.1624	NEUTRAL	NA	22	"AMOTL2,ANAPC13,BFSP2,C3orf36,CDV3,CEP63,EPHB1,IL20RB,KY,MSL2,NCK1,PCCB,PPP2R3A,RAB6B,RYK,SLC35G2,SLCO2A1,SRPRB,STAG1,TF,TMEM108,TOPBP1"
TCGA.AG.3909.01A	3	133118927	133368247	29	0.2837	NEUTRAL	NA	3	"BFSP2,CDV3,TOPBP1"
TCGA.A6.6653	3	133172373	133780300	229	-0.0011	NEUTRAL	NA	8	"BFSP2,C3orf36,CDV3,RAB6B,SLCO2A1,SRPRB,TF,TOPBP1"
TCGA.AA.A01Q.01A	3	133193715	134214093	68	0.2628	NEUTRAL	NA	12	"AMOTL2,ANAPC13,BFSP2,C3orf36,CDV3,CEP63,RAB6B,RYK,SLCO2A1,SRPRB,TF,TOPBP1"
TCGA.AG.3893	3	133254013	197833757	17991	0.1315	NEUTRAL	NA	323	Too-Many
TCGA.AA.A00N.01A	3	133320046	133331185	5	0.2859	NEUTRAL	NA	1	TOPBP1
TCGA.CK.5914.01A	3	133327328	133362812	16	0.3517	NEUTRAL	NA	1	TOPBP1
TCGA.AG.3891.01A	3	133327328	148614288	716	-0.1505	NEUTRAL	NA	73	"A4GNT,AGTR1,AMOTL2,ANAPC13,ARMC8,ATP1B3,ATR,C3orf36,C3orf58,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COPB2,CPA3,CPB1,DBR1,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPS22,MSL2,NCK1,NME9,NMNAT3,PAQR9,PCCB,PCOLCE2,PIK3CB,PLOD2,PLS1,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLC9A9,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TOPBP1,TRIM42,TRPC1,U2SURP,XRN1,ZBTB38,ZIC1,ZIC4"
TCGA.AA.A010.01A	3	133374103	138477974	321	0.2897	NEUTRAL	NA	31	"A4GNT,AMOTL2,ANAPC13,ARMC8,C3orf36,CEP63,CEP70,CLDN18,DBR1,DZIP1L,EPHB1,ESYT3,FAIM,IL20RB,KY,MRAS,MSL2,NCK1,NME9,PCCB,PIK3CB,PPP2R3A,RAB6B,RYK,SLC35G2,SLCO2A1,SOX14,SRPRB,STAG1,TF,TOPBP1"
TCGA.AG.A00C.01A	3	133467209	138023668	238	-0.0787	NEUTRAL	NA	25	"A4GNT,AMOTL2,ANAPC13,ARMC8,C3orf36,CEP63,CLDN18,DBR1,DZIP1L,EPHB1,IL20RB,KY,MSL2,NCK1,NME9,PCCB,PPP2R3A,RAB6B,RYK,SLC35G2,SLCO2A1,SOX14,SRPRB,STAG1,TF"
TCGA.AG.3909.01A	3	133538370	133941224	38	0.2666	NEUTRAL	NA	5	"C3orf36,RAB6B,RYK,SLCO2A1,SRPRB"
TCGA.CK.5914.01A	3	133538370	137822294	185	0.1597	NEUTRAL	NA	20	"AMOTL2,ANAPC13,C3orf36,CEP63,CLDN18,DZIP1L,EPHB1,IL20RB,KY,MSL2,NCK1,PCCB,PPP2R3A,RAB6B,RYK,SLC35G2,SLCO2A1,SOX14,SRPRB,STAG1"
TCGA.AG.A01L.01A	3	133661402	183862338	1972	0.1645	NEUTRAL	NA	211	Too-Many
TCGA.AG.4009.01A	3	133670012	138474589	269	0.0725	NEUTRAL	NA	26	"A4GNT,AMOTL2,ANAPC13,ARMC8,CEP63,CEP70,CLDN18,DBR1,DZIP1L,EPHB1,ESYT3,FAIM,IL20RB,KY,MRAS,MSL2,NCK1,NME9,PCCB,PIK3CB,PPP2R3A,RYK,SLC35G2,SLCO2A1,SOX14,STAG1"
TCGA.DM.A1HB	3	133754096	197833757	17623	-0.0031	NEUTRAL	NA	316	Too-Many
TCGA.A6.6653	3	133792548	197833757	17950	0.0097	NEUTRAL	NA	316	Too-Many
TCGA.AA.A00N.01A	3	134225900	134644602	26	0.2625	NEUTRAL	NA	3	"CEP63,EPHB1,KY"
TCGA.AG.3909.01A	3	134225900	134644602	26	0.2462	NEUTRAL	NA	3	"CEP63,EPHB1,KY"
TCGA.AG.3909.01A	3	135720333	136676913	67	0.2943	NEUTRAL	NA	7	"IL20RB,MSL2,NCK1,PCCB,PPP2R3A,SLC35G2,STAG1"
TCGA.AA.A00Q.01A	3	135720333	138664414	187	-0.304	NEUTRAL	NA	20	"A4GNT,ARMC8,CEP70,CLDN18,DBR1,DZIP1L,ESYT3,FAIM,FOXL2,IL20RB,MRAS,MSL2,NCK1,NME9,PCCB,PIK3CB,PPP2R3A,SLC35G2,SOX14,STAG1"
TCGA.AA.A00N.01A	3	135863838	136002632	9	-0.3458	NEUTRAL	NA	3	"MSL2,PCCB,PPP2R3A"
TCGA.AG.3611.01A	3	136002632	143691125	433	0.2045	NEUTRAL	NA	49	"A4GNT,ARMC8,ATP1B3,ATR,C3orf58,CEP70,CHST2,CLDN18,CLSTN2,COPB2,DBR1,DZIP1L,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,MRAS,MRPS22,NCK1,NME9,NMNAT3,PAQR9,PCCB,PCOLCE2,PIK3CB,PLS1,PRR23A,PRR23B,PRR23C,PXYLP1,RASA2,RBP1,RBP2,RNF7,SLC25A36,SLC35G2,SLC9A9,SOX14,SPSB4,STAG1,TFDP2,TRIM42,TRPC1,U2SURP,XRN1,ZBTB38"
TCGA.AA.A00N.01A	3	136059286	136349690	30	0.3581	NEUTRAL	NA	1	STAG1
TCGA.SS.A7HO	3	136445958	168718884	8668	0.0293	NEUTRAL	NA	139	Too-Many
TCGA.AA.A00N.01A	3	136573281	137483598	12	-0.3177	NEUTRAL	NA	4	"IL20RB,NCK1,SLC35G2,SOX14"
TCGA.AA.3941	3	137216932	139350315	498	0.2204	NEUTRAL	NA	22	"A4GNT,ARMC8,CEP70,CLDN18,COPB2,DBR1,DZIP1L,ESYT3,FAIM,FOXL2,FOXL2NB,MRAS,MRPS22,NME9,NMNAT3,PIK3CB,PRR23A,PRR23B,PRR23C,RBP1,RBP2,SOX14"
TCGA.AA.A00F.01A	3	137483598	137790444	12	-0.3645	NEUTRAL	NA	3	"CLDN18,DZIP1L,SOX14"
TCGA.D5.6532	3	137666146	174207419	10162	0.0113	NEUTRAL	NA	161	Too-Many
TCGA.AG.3909.01A	3	137717659	138170814	67	0.2538	NEUTRAL	NA	8	"A4GNT,ARMC8,CLDN18,DBR1,DZIP1L,ESYT3,MRAS,NME9"
TCGA.AA.A00F.01A	3	137796289	138187462	57	-0.009	NEUTRAL	NA	7	"A4GNT,ARMC8,DBR1,DZIP1L,ESYT3,MRAS,NME9"
TCGA.AA.A00N.01A	3	137796289	138192338	72	0.1273	NEUTRAL	NA	7	"A4GNT,ARMC8,DBR1,DZIP1L,ESYT3,MRAS,NME9"
TCGA.AA.A02J.01A	3	137885886	197765401	2664	-0.0697	NEUTRAL	NA	299	Too-Many
TCGA.CK.5914.01A	3	137928601	138762693	106	-0.0148	NEUTRAL	NA	12	"ARMC8,CEP70,ESYT3,FAIM,FOXL2,FOXL2NB,MRAS,NME9,PIK3CB,PRR23A,PRR23B,PRR23C"
TCGA.AG.A00C.01A	3	138091695	138216814	27	-0.0343	NEUTRAL	NA	3	"CEP70,ESYT3,MRAS"
TCGA.AG.3909.01A	3	138173988	138192338	16	-0.2208	NEUTRAL	NA	1	ESYT3
TCGA.AA.A00F.01A	3	138188233	138248019	10	0.3623	NEUTRAL	NA	2	"CEP70,ESYT3"
TCGA.CL.4957	3	138209343	175250440	10442	0.3068	NEUTRAL	NA	154	Too-Many
TCGA.AG.A00C.01A	3	138218922	138341023	16	0.3719	NEUTRAL	NA	2	"CEP70,FAIM"
TCGA.AA.A00F.01A	3	138251286	138291636	5	0.075	NEUTRAL	NA	1	CEP70
TCGA.AG.3909.01A	3	138251286	138341023	9	-0.2791	NEUTRAL	NA	2	"CEP70,FAIM"
TCGA.AA.A00F.01A	3	138329740	138347884	5	0.337	NEUTRAL	NA	1	FAIM
TCGA.AG.A00C.01A	3	138347884	138433263	18	-0.1601	NEUTRAL	NA	2	"FAIM,PIK3CB"
TCGA.AA.A00F.01A	3	138351720	168849165	958	-0.0996	NEUTRAL	NA	126	Too-Many
TCGA.AG.A00C.01A	3	138452144	138664414	7	0.1573	NEUTRAL	NA	2	"FOXL2,PIK3CB"
TCGA.A6.3810.01A	3	138474589	138668310	6	-0.0127	NEUTRAL	NA	3	"FOXL2,FOXL2NB,PIK3CB"
TCGA.AA.A00N.01A	3	138474589	138762693	12	-0.3054	NEUTRAL	NA	6	"FOXL2,FOXL2NB,PIK3CB,PRR23A,PRR23B,PRR23C"
TCGA.A6.3810.01A	3	138669057	184081220	1886	0.3038	NEUTRAL	NA	196	Too-Many
TCGA.AA.A00Q.01A	3	138724269	139068974	8	0.2537	NEUTRAL	NA	4	"MRPS22,PRR23A,PRR23B,PRR23C"
TCGA.AA.A010.01A	3	138724269	141161230	80	0.3585	NEUTRAL	NA	14	"CLSTN2,COPB2,MRPS22,NMNAT3,PRR23A,PRR23B,PRR23C,PXYLP1,RBP1,RBP2,SLC25A36,SPSB4,TRIM42,ZBTB38"
TCGA.AG.3906.01A	3	138724269	142741653	266	-0.0503	NEUTRAL	NA	27	"ATP1B3,ATR,CLSTN2,COPB2,GK5,GRK7,MRPS22,NMNAT3,PAQR9,PCOLCE2,PLS1,PRR23A,PRR23B,PRR23C,PXYLP1,RASA2,RBP1,RBP2,RNF7,SLC25A36,SPSB4,TFDP2,TRIM42,TRPC1,U2SURP,XRN1,ZBTB38"
TCGA.AG.A00C.01A	3	138724739	142753692	269	-0.1162	NEUTRAL	NA	27	"ATP1B3,ATR,CLSTN2,COPB2,GK5,GRK7,MRPS22,NMNAT3,PAQR9,PCOLCE2,PLS1,PRR23A,PRR23B,PRR23C,PXYLP1,RASA2,RBP1,RBP2,RNF7,SLC25A36,SPSB4,TFDP2,TRIM42,TRPC1,U2SURP,XRN1,ZBTB38"
TCGA.AY.6196	3	138797350	156508709	5213	-0.1309	NEUTRAL	NA	82	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ATP1B3,ATR,C3orf33,C3orf58,C3orf79,CHST2,CLRN1,CLSTN2,COMMD2,COPB2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GK5,GMPS,GPR149,GPR171,GPR87,GRK7,GYG1,HLTF,HPS3,IGSF10,KCNAB1,MBNL1,MED12L,MME,MRPS22,NMNAT3,P2RY1,P2RY12,P2RY13,P2RY14,PAQR9,PCOLCE2,PFN2,PLCH1,PLOD2,PLS1,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PXYLP1,RAP2B,RASA2,RBP1,RBP2,RNF13,RNF7,SELT,SERP1,SIAH2,SLC25A36,SLC33A1,SLC9A9,SPSB4,SSR3,SUCNR1,TFDP2,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM42,TRPC1,TSC22D2,U2SURP,WWTR1,XRN1,ZBTB38,ZIC1,ZIC4"
TCGA.AG.4009.01A	3	139062819	139237213	34	0.1345	NEUTRAL	NA	4	"COPB2,MRPS22,RBP1,RBP2"
TCGA.AA.A00Q.01A	3	139069762	152884631	532	-0.396	NEUTRAL	NA	70	"AADAC,AADACL2,AGTR1,ANKUB1,ATP1B3,ATR,C3orf58,CHST2,CLRN1,CLSTN2,COMMD2,COPB2,CP,CPA3,CPB1,EIF2A,ERICH6,GK5,GPR171,GPR87,GRK7,GYG1,HLTF,HPS3,IGSF10,MBNL1,MED12L,MRPS22,NMNAT3,P2RY1,P2RY12,P2RY13,P2RY14,PAQR9,PCOLCE2,PFN2,PLOD2,PLS1,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PXYLP1,RAP2B,RASA2,RBP1,RBP2,RNF13,RNF7,SELT,SERP1,SIAH2,SLC25A36,SLC9A9,SPSB4,SUCNR1,TFDP2,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM42,TRPC1,TSC22D2,U2SURP,WWTR1,XRN1,ZBTB38,ZIC1,ZIC4"
TCGA.AG.3909.01A	3	139244636	139279834	4	-0.1773	NEUTRAL	NA	2	"NMNAT3,RBP1"
TCGA.AG.4009.01A	3	139244636	139279834	4	-0.4446	NEUTRAL	NA	2	"NMNAT3,RBP1"
TCGA.AG.4009.01A	3	139292382	142405086	183	0.0584	NEUTRAL	NA	16	"ATP1B3,ATR,CLSTN2,GK5,GRK7,NMNAT3,PLS1,PXYLP1,RASA2,RNF7,SLC25A36,SPSB4,TFDP2,TRIM42,XRN1,ZBTB38"
TCGA.AA.3941	3	139353606	140631467	589	-0.0224	NEUTRAL	NA	3	"CLSTN2,NMNAT3,TRIM42"
TCGA.CA.5797	3	139472487	175024685	10005	-0.0058	NEUTRAL	NA	141	Too-Many
TCGA.EI.6884	3	139542873	197833757	16450	0.3579	NEUTRAL	NA	281	Too-Many
TCGA.A6.5661	3	139732249	141817435	730	-0.276	NEUTRAL	NA	11	"ATP1B3,CLSTN2,GRK7,PXYLP1,RASA2,RNF7,SLC25A36,SPSB4,TFDP2,TRIM42,ZBTB38"
TCGA.CK.5914.01A	3	140397025	141457133	45	0.1565	NEUTRAL	NA	7	"PXYLP1,RASA2,RNF7,SLC25A36,SPSB4,TRIM42,ZBTB38"
TCGA.AA.A00N.01A	3	140660821	140784917	8	-0.2439	NEUTRAL	NA	2	"SLC25A36,SPSB4"
TCGA.AG.3909.01A	3	140689715	141457133	35	0.3184	NEUTRAL	NA	6	"PXYLP1,RASA2,RNF7,SLC25A36,SPSB4,ZBTB38"
TCGA.F5.6814	3	141081821	141188398	28	0.3619	NEUTRAL	NA	1	ZBTB38
TCGA.F5.6814	3	141198567	144350010	911	-0.0665	NEUTRAL	NA	16	"ATP1B3,ATR,C3orf58,CHST2,GK5,GRK7,PAQR9,PCOLCE2,PLS1,RASA2,RNF7,SLC9A9,TFDP2,TRPC1,U2SURP,XRN1"
TCGA.AA.A010.01A	3	141248496	142413249	151	0.2457	NEUTRAL	NA	9	"ATP1B3,ATR,GK5,GRK7,PLS1,RASA2,RNF7,TFDP2,XRN1"
TCGA.DM.A28M.01A	3	141289725	143708320	220	-0.0764	NEUTRAL	NA	16	"ATP1B3,ATR,C3orf58,CHST2,GK5,GRK7,PAQR9,PCOLCE2,PLS1,RASA2,RNF7,SLC9A9,TFDP2,TRPC1,U2SURP,XRN1"
TCGA.CK.5914.01A	3	141535509	141724193	18	0.3371	NEUTRAL	NA	3	"ATP1B3,GRK7,TFDP2"
TCGA.AG.3909.01A	3	141535509	142145538	67	0.2796	NEUTRAL	NA	5	"ATP1B3,GK5,GRK7,TFDP2,XRN1"
TCGA.A6.5661	3	141818849	193963482	14823	0.1379	NEUTRAL	NA	230	Too-Many
TCGA.AG.3742	3	141853925	159358214	4923	0.0141	NEUTRAL	NA	82	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ATR,C3orf33,C3orf58,C3orf79,CCNL1,CHST2,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GK5,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IGSF10,IQCJ,IQCJ-SCHIP1,KCNAB1,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,P2RY1,P2RY12,P2RY13,P2RY14,PAQR9,PCOLCE2,PFN2,PLCH1,PLOD2,PLS1,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PQLC2L,PTX3,RAP2B,RARRES1,RNF13,RSRC1,SCHIP1,SELT,SERP1,SHOX2,SIAH2,SLC33A1,SLC9A9,SSR3,SUCNR1,TFDP2,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRPC1,TSC22D2,U2SURP,VEPH1,WWTR1,XRN1,ZIC1,ZIC4"
TCGA.AA.A00N.01A	3	141884426	141934403	14	-0.3481	NEUTRAL	NA	1	GK5
TCGA.A6.3808.01A	3	141923492	160093558	751	0.1012	NEUTRAL	NA	84	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ATR,C3orf33,C3orf58,C3orf79,C3orf80,CCNL1,CHST2,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GK5,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,P2RY1,P2RY12,P2RY13,P2RY14,PAQR9,PCOLCE2,PFN2,PLCH1,PLOD2,PLS1,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PQLC2L,PTX3,RAP2B,RARRES1,RNF13,RSRC1,SCHIP1,SELT,SERP1,SHOX2,SIAH2,SLC33A1,SLC9A9,SSR3,SUCNR1,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRPC1,TSC22D2,U2SURP,VEPH1,WWTR1,XRN1,ZIC1,ZIC4"
TCGA.CK.5914.01A	3	141944100	142089325	15	0.3447	NEUTRAL	NA	2	"GK5,XRN1"
TCGA.CK.5914.01A	3	142090029	142166670	23	-0.0476	NEUTRAL	NA	1	XRN1
TCGA.AA.A00N.01A	3	142139816	142145538	6	-0.1175	NEUTRAL	NA	1	XRN1
TCGA.AG.3909.01A	3	142151486	142183907	8	-0.4651	NEUTRAL	NA	2	"ATR,XRN1"
TCGA.CK.5914.01A	3	142183907	142234190	17	0.1674	NEUTRAL	NA	1	ATR
TCGA.AG.3909.01A	3	142185129	142752056	90	0.2052	NEUTRAL	NA	6	"ATR,PAQR9,PCOLCE2,PLS1,TRPC1,U2SURP"
TCGA.CK.5914.01A	3	142272037	142754772	66	0.0648	NEUTRAL	NA	6	"ATR,PAQR9,PCOLCE2,PLS1,TRPC1,U2SURP"
TCGA.AG.4009.01A	3	142408413	142467058	10	-0.465	NEUTRAL	NA	2	"PLS1,TRPC1"
TCGA.AG.4009.01A	3	142496427	142735643	24	0.0245	NEUTRAL	NA	4	"PAQR9,PCOLCE2,TRPC1,U2SURP"
TCGA.AA.3941	3	142523348	142986036	209	0.2014	NEUTRAL	NA	6	"CHST2,PAQR9,PCOLCE2,SLC9A9,TRPC1,U2SURP"
TCGA.AA.A010.01A	3	142537130	142735643	16	0.2131	NEUTRAL	NA	3	"PAQR9,PCOLCE2,U2SURP"
TCGA.AG.4009.01A	3	142738743	142752056	10	-0.2509	NEUTRAL	NA	1	U2SURP
TCGA.AA.A010.01A	3	142839607	146322892	69	-0.1808	NEUTRAL	NA	8	"C3orf58,CHST2,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,SLC9A9"
TCGA.AG.3906.01A	3	142840180	145788810	22	-0.0274	NEUTRAL	NA	4	"C3orf58,CHST2,PLOD2,SLC9A9"
TCGA.AF.6672	3	142847281	143413622	284	0.017	NEUTRAL	NA	1	SLC9A9
TCGA.AA.3811	3	142925006	169257855	7080	-0.469	NEUTRAL	NA	94	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ARL14,B3GALNT1,BCHE,C3orf33,C3orf58,C3orf79,C3orf80,CCNL1,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GMPS,GOLIM4,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MBNL1,MECOM,MED12L,MFSD1,MLF1,MME,NMD3,OTOL1,P2RY1,P2RY12,P2RY13,P2RY14,PDCD10,PFN2,PLCH1,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PPM1L,PQLC2L,PTX3,RAP2B,RARRES1,RNF13,RSRC1,SCHIP1,SELT,SERP1,SERPINI1,SERPINI2,SHOX2,SI,SIAH2,SLC33A1,SLC9A9,SLITRK3,SMC4,SPTSSB,SSR3,SUCNR1,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM59,TSC22D2,VEPH1,WDR49,WWTR1,ZBBX,ZIC1,ZIC4"
TCGA.AG.4009.01A	3	142985506	143566940	16	0.1061	NEUTRAL	NA	1	SLC9A9
TCGA.CK.5914.01A	3	142985506	148614288	94	-0.004	NEUTRAL	NA	12	"AGTR1,C3orf58,CPA3,CPB1,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,SLC9A9,ZIC1,ZIC4"
TCGA.AG.A00C.01A	3	142985506	156262070	442	-0.1029	NEUTRAL	NA	56	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,C3orf33,C3orf58,C3orf79,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IGSF10,KCNAB1,MBNL1,MED12L,MME,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLCH1,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,RAP2B,RNF13,SELT,SERP1,SIAH2,SLC33A1,SLC9A9,SSR3,SUCNR1,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TSC22D2,WWTR1,ZIC1,ZIC4"
TCGA.AA.3941	3	142994193	143636615	276	-0.2535	NEUTRAL	NA	1	SLC9A9
TCGA.AA.3982	3	142994193	148412364	1543	-0.4714	NEUTRAL	NA	9	"C3orf58,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,SLC9A9,ZIC1,ZIC4"
TCGA.AF.6672	3	143418400	197833757	15172	0.3005	NEUTRAL	NA	261	Too-Many
TCGA.AA.A00O.01A	3	143513780	152553615	298	0.0539	NEUTRAL	NA	44	"AADAC,AADACL2,AGTR1,ANKUB1,C3orf58,CLRN1,COMMD2,CP,CPA3,CPB1,EIF2A,ERICH6,GPR171,GPR87,GYG1,HLTF,HPS3,IGSF10,MBNL1,MED12L,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,RNF13,SELT,SERP1,SIAH2,SLC9A9,SUCNR1,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TSC22D2,WWTR1,ZIC1,ZIC4"
TCGA.AA.3867	3	143545761	145502625	524	-0.1539	NEUTRAL	NA	2	"C3orf58,SLC9A9"
TCGA.AG.3909.01A	3	143691125	146322892	48	-0.2103	NEUTRAL	NA	6	"C3orf58,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5"
TCGA.AG.4009.01A	3	143691125	148458781	55	-0.3486	NEUTRAL	NA	9	"AGTR1,C3orf58,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,ZIC1,ZIC4"
TCGA.AG.3611.01A	3	143704336	147131102	47	-0.1668	NEUTRAL	NA	8	"C3orf58,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,ZIC1,ZIC4"
TCGA.T9.A92H	3	143825438	174532657	8378	-0.2543	NEUTRAL	NA	118	Too-Many
TCGA.EI.6508	3	143982471	174174493	8244	0.0836	NEUTRAL	NA	118	Too-Many
TCGA.CM.5862	3	144227976	197833757	14928	-0.0798	NEUTRAL	NA	259	Too-Many
TCGA.CA.6716	3	144298449	175070187	8431	-0.2962	NEUTRAL	NA	119	Too-Many
TCGA.F5.6814	3	144491346	197833757	14857	-0.0423	NEUTRAL	NA	259	Too-Many
TCGA.DM.A285	3	144993380	197833757	14725	0.2414	NEUTRAL	NA	259	Too-Many
TCGA.AA.3867	3	145504101	197833757	14601	0.1121	NEUTRAL	NA	259	Too-Many
TCGA.EI.6885	3	145695145	162504666	4669	-0.2996	NEUTRAL	NA	82	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ARL14,B3GALNT1,C3orf33,C3orf79,C3orf80,CCNL1,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,NMD3,OTOL1,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLCH1,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PPM1L,PQLC2L,PTX3,RAP2B,RARRES1,RNF13,RSRC1,SCHIP1,SELT,SERP1,SHOX2,SIAH2,SLC33A1,SMC4,SPTSSB,SSR3,SUCNR1,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM59,TSC22D2,VEPH1,WWTR1,ZIC1,ZIC4"
TCGA.AA.A01Q.01A	3	145788464	145822001	14	0.0145	NEUTRAL	NA	1	PLOD2
TCGA.AG.3906.01A	3	145790306	145912120	17	0.2489	NEUTRAL	NA	2	"PLOD2,PLSCR4"
TCGA.DM.A28M.01A	3	145820505	164704874	647	-0.027	NEUTRAL	NA	83	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ARL14,B3GALNT1,C3orf33,C3orf79,C3orf80,CCNL1,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,NMD3,OTOL1,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLCH1,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PPM1L,PQLC2L,PTX3,RAP2B,RARRES1,RNF13,RSRC1,SCHIP1,SELT,SERP1,SHOX2,SI,SIAH2,SLC33A1,SMC4,SPTSSB,SSR3,SUCNR1,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM59,TSC22D2,VEPH1,WWTR1,ZIC1,ZIC4"
TCGA.AG.3906.01A	3	145912899	148614288	53	-0.0969	NEUTRAL	NA	9	"AGTR1,CPA3,CPB1,PLSCR1,PLSCR2,PLSCR4,PLSCR5,ZIC1,ZIC4"
TCGA.AA.3930.01A	3	146171742	147106547	19	-0.3304	NEUTRAL	NA	4	"PLSCR1,PLSCR2,PLSCR5,ZIC4"
TCGA.F4.6459	3	146287643	146762193	138	-0.442	NEUTRAL	NA	1	PLSCR5
TCGA.F4.6459	3	146774290	174177348	7439	0.0097	NEUTRAL	NA	113	Too-Many
TCGA.AA.3930.01A	3	147127883	148458781	4	-0.4704	NEUTRAL	NA	2	"AGTR1,ZIC1"
TCGA.AA.3941	3	148412364	161203452	3586	-0.0879	NEUTRAL	NA	74	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ARL14,B3GALNT1,C3orf33,C3orf79,C3orf80,CCNL1,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,NMD3,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLCH1,PPM1L,PQLC2L,PTX3,RAP2B,RARRES1,RNF13,RSRC1,SCHIP1,SELT,SERP1,SHOX2,SIAH2,SLC33A1,SMC4,SPTSSB,SSR3,SUCNR1,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM59,TSC22D2,VEPH1,WWTR1"
TCGA.AA.3982	3	148412407	160459497	3382	-0.141	NEUTRAL	NA	70	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ARL14,C3orf33,C3orf79,C3orf80,CCNL1,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLCH1,PQLC2L,PTX3,RAP2B,RARRES1,RNF13,RSRC1,SCHIP1,SELT,SERP1,SHOX2,SIAH2,SLC33A1,SMC4,SSR3,SUCNR1,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM59,TSC22D2,VEPH1,WWTR1"
TCGA.AA.3844	3	148414886	161203628	3582	-0.2164	NEUTRAL	NA	74	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ARL14,B3GALNT1,C3orf33,C3orf79,C3orf80,CCNL1,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,NMD3,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLCH1,PPM1L,PQLC2L,PTX3,RAP2B,RARRES1,RNF13,RSRC1,SCHIP1,SELT,SERP1,SHOX2,SIAH2,SLC33A1,SMC4,SPTSSB,SSR3,SUCNR1,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM59,TSC22D2,VEPH1,WWTR1"
TCGA.AG.3611.01A	3	148458781	185375024	1273	0.1755	NEUTRAL	NA	170	Too-Many
TCGA.AA.3930.01A	3	148459316	148863124	53	-0.0493	NEUTRAL	NA	6	"AGTR1,CPA3,CPB1,GYG1,HLTF,HPS3"
TCGA.AG.4009.01A	3	148459316	149638869	115	0.0068	NEUTRAL	NA	14	"AGTR1,ANKUB1,COMMD2,CP,CPA3,CPB1,GYG1,HLTF,HPS3,RNF13,TM4SF1,TM4SF18,TM4SF4,WWTR1"
TCGA.AA.3850	3	148578517	151195539	811	0.01145	NEUTRAL	NA	27	"ANKUB1,CLRN1,COMMD2,CP,CPA3,EIF2A,ERICH6,GPR171,GPR87,GYG1,HLTF,HPS3,IGSF10,MED12L,P2RY12,P2RY13,P2RY14,PFN2,RNF13,SELT,SERP1,SIAH2,TM4SF1,TM4SF18,TM4SF4,TSC22D2,WWTR1"
TCGA.AG.3891.01A	3	148711913	148727065	4	0.2699	NEUTRAL	NA	1	GYG1
TCGA.AG.3909.01A	3	148711913	148877786	39	-0.0085	NEUTRAL	NA	3	"GYG1,HLTF,HPS3"
TCGA.AG.3906.01A	3	148727065	149042650	63	-0.0501	NEUTRAL	NA	5	"CP,GYG1,HLTF,HPS3,TM4SF18"
TCGA.AG.3891.01A	3	148741830	149042650	63	-0.2057	NEUTRAL	NA	5	"CP,GYG1,HLTF,HPS3,TM4SF18"
TCGA.AA.A00N.01A	3	148785973	148881581	20	-0.3084	NEUTRAL	NA	2	"HLTF,HPS3"
TCGA.CK.5914.01A	3	148804014	149638869	74	0.158	NEUTRAL	NA	10	"ANKUB1,COMMD2,CP,HLTF,HPS3,RNF13,TM4SF1,TM4SF18,TM4SF4,WWTR1"
TCGA.AA.A010.01A	3	148857740	148880450	11	-0.2756	NEUTRAL	NA	1	HPS3
TCGA.AA.3930.01A	3	148868326	148879887	7	-0.3108	NEUTRAL	NA	1	HPS3
TCGA.AA.3930.01A	3	148880450	155282667	282	-0.0381	NEUTRAL	NA	37	"AADAC,AADACL2,ANKUB1,ARHGEF26,C3orf79,CLRN1,COMMD2,CP,DHX36,EIF2A,ERICH6,GPR149,GPR171,GPR87,HPS3,IGSF10,MBNL1,MED12L,MME,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLCH1,RAP2B,RNF13,SELT,SERP1,SIAH2,SUCNR1,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TSC22D2,WWTR1"
TCGA.AG.3891.01A	3	149048061	149095118	6	0.1856	NEUTRAL	NA	2	"TM4SF1,TM4SF18"
TCGA.AG.3909.01A	3	149087574	149192616	5	-0.4438	NEUTRAL	NA	2	"TM4SF1,TM4SF4"
TCGA.AA.A010.01A	3	149192616	149638869	28	0.3237	NEUTRAL	NA	5	"ANKUB1,COMMD2,RNF13,TM4SF4,WWTR1"
TCGA.AG.3906.01A	3	149192616	150342544	53	-0.0638	NEUTRAL	NA	10	"ANKUB1,COMMD2,EIF2A,PFN2,RNF13,SELT,SERP1,TM4SF4,TSC22D2,WWTR1"
TCGA.AG.3891.01A	3	149192616	178984370	926	-0.2169	NEUTRAL	NA	108	Too-Many
TCGA.AG.3909.01A	3	149193558	149638869	22	0.3181	NEUTRAL	NA	5	"ANKUB1,COMMD2,RNF13,TM4SF4,WWTR1"
TCGA.DY.A1DF	3	149569220	150217340	171	-0.4965	NEUTRAL	NA	3	"PFN2,RNF13,TSC22D2"
TCGA.D5.5540	3	149624225	172163448	5986	0.0239	NEUTRAL	NA	93	"AADAC,AADACL2,ACTRT3,ARHGEF26,ARL14,B3GALNT1,BCHE,C3orf33,C3orf79,C3orf80,CCNL1,CLDN11,CLRN1,DHX36,EIF2A,EIF5A2,ERICH6,FNDC3B,GFM1,GHSR,GMPS,GOLIM4,GPR149,GPR160,GPR171,GPR87,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LRRC31,LRRC34,LRRIQ4,LXN,MBNL1,MECOM,MED12L,MFSD1,MLF1,MME,MYNN,NMD3,OTOL1,P2RY1,P2RY12,P2RY13,P2RY14,PDCD10,PFN2,PHC3,PLCH1,PLD1,PPM1L,PQLC2L,PRKCI,PTX3,RAP2B,RARRES1,RNF13,RPL22L1,RSRC1,SAMD7,SCHIP1,SEC62,SELT,SERP1,SERPINI1,SERPINI2,SHOX2,SI,SIAH2,SKIL,SLC2A2,SLC33A1,SLC7A14,SLITRK3,SMC4,SPTSSB,SSR3,SUCNR1,TIPARP,TMEM14E,TMEM212,TNIK,TRIM59,TSC22D2,VEPH1,WDR49,ZBBX"
TCGA.5M.AATA	3	149659445	150006337	111	0.3063	NEUTRAL	NA	2	"PFN2,RNF13"
TCGA.AG.3909.01A	3	149677795	150282066	18	-0.4898	NEUTRAL	NA	5	"EIF2A,PFN2,RNF13,SERP1,TSC22D2"
TCGA.CK.5914.01A	3	149677795	150419835	45	-0.3804	NEUTRAL	NA	7	"EIF2A,ERICH6,PFN2,RNF13,SELT,SERP1,TSC22D2"
TCGA.AA.A010.01A	3	149688474	154802789	182	0.323	NEUTRAL	NA	27	"AADAC,AADACL2,ARHGEF26,C3orf79,CLRN1,DHX36,EIF2A,ERICH6,GPR149,GPR171,GPR87,IGSF10,MBNL1,MED12L,MME,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,RAP2B,SELT,SERP1,SIAH2,SUCNR1,TMEM14E,TSC22D2"
TCGA.5M.AATA	3	150007219	197833757	13316	0.0319	NEUTRAL	NA	237	Too-Many
TCGA.AG.4009.01A	3	150127121	157295994	288	-0.0089	NEUTRAL	NA	38	"AADAC,AADACL2,ARHGEF26,C3orf33,C3orf79,CCNL1,CLRN1,DHX36,EIF2A,ERICH6,GMPS,GPR149,GPR171,GPR87,IGSF10,KCNAB1,LEKR1,MBNL1,MED12L,MME,P2RY1,P2RY12,P2RY13,P2RY14,PLCH1,PQLC2L,PTX3,RAP2B,SELT,SERP1,SIAH2,SLC33A1,SSR3,SUCNR1,TIPARP,TMEM14E,TSC22D2,VEPH1"
TCGA.DY.A1DF	3	150218613	197833757	13273	-0.0423	NEUTRAL	NA	236	Too-Many
TCGA.AG.3909.01A	3	150285415	150321109	9	0.1532	NEUTRAL	NA	2	"EIF2A,SELT"
TCGA.AG.3906.01A	3	150344750	150419835	13	0.2739	NEUTRAL	NA	2	"ERICH6,SELT"
TCGA.AA.A00N.01A	3	150377641	150419835	12	0.3196	NEUTRAL	NA	1	ERICH6
TCGA.CK.5914.01A	3	150421276	151085402	37	0.0685	NEUTRAL	NA	9	"CLRN1,ERICH6,GPR171,GPR87,MED12L,P2RY12,P2RY13,P2RY14,SIAH2"
TCGA.AG.3906.01A	3	150421276	160804309	395	-0.0991	NEUTRAL	NA	53	"AADAC,AADACL2,ARHGEF26,ARL14,B3GALNT1,C3orf33,C3orf79,C3orf80,CCNL1,CLRN1,DHX36,ERICH6,GFM1,GMPS,GPR149,GPR171,GPR87,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,P2RY1,P2RY12,P2RY13,P2RY14,PLCH1,PPM1L,PQLC2L,PTX3,RAP2B,RARRES1,RSRC1,SCHIP1,SHOX2,SIAH2,SLC33A1,SMC4,SSR3,SUCNR1,TIPARP,TMEM14E,TRIM59,VEPH1"
TCGA.CK.5914.01A	3	151148026	151176256	10	-0.414	NEUTRAL	NA	2	"IGSF10,MED12L"
TCGA.AG.3909.01A	3	151150468	151176256	9	-0.0257	NEUTRAL	NA	2	"IGSF10,MED12L"
TCGA.CM.6165.01A	3	151150468	196509471	2027	0.0293	NEUTRAL	NA	213	Too-Many
TCGA.AA.3850	3	151200600	155136644	1044	-0.33685	NEUTRAL	NA	12	"AADAC,AADACL2,ARHGEF26,C3orf79,DHX36,GPR149,MBNL1,MME,P2RY1,RAP2B,SUCNR1,TMEM14E"
TCGA.G4.6322	3	151426952	158480698	1903	0.0412	NEUTRAL	NA	30	"AADAC,AADACL2,ARHGEF26,C3orf33,C3orf79,CCNL1,DHX36,GFM1,GMPS,GPR149,KCNAB1,LEKR1,LXN,MBNL1,MLF1,MME,P2RY1,PLCH1,PQLC2L,PTX3,RAP2B,RARRES1,RSRC1,SHOX2,SLC33A1,SSR3,SUCNR1,TIPARP,TMEM14E,VEPH1"
TCGA.AG.3909.01A	3	151451786	152176992	23	0.2957	NEUTRAL	NA	5	"AADAC,AADACL2,MBNL1,SUCNR1,TMEM14E"
TCGA.CK.5914.01A	3	151451786	152176992	23	0.2167	NEUTRAL	NA	5	"AADAC,AADACL2,MBNL1,SUCNR1,TMEM14E"
TCGA.AF.3913	3	151658472	151802398	45	-0.0472	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	3	152553615	153847333	10	-0.4496	NEUTRAL	NA	4	"ARHGEF26,C3orf79,P2RY1,RAP2B"
TCGA.AA.A00N.01A	3	153202298	153847333	7	-0.2698	NEUTRAL	NA	2	"ARHGEF26,C3orf79"
TCGA.CK.5914.01A	3	153202298	160958782	324	-0.1055	NEUTRAL	NA	37	"ARHGEF26,ARL14,B3GALNT1,C3orf33,C3orf79,C3orf80,CCNL1,DHX36,GFM1,GMPS,GPR149,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MFSD1,MLF1,MME,NMD3,PLCH1,PPM1L,PQLC2L,PTX3,RARRES1,RSRC1,SCHIP1,SHOX2,SLC33A1,SMC4,SSR3,TIPARP,TRIM59,VEPH1"
TCGA.CM.4752	3	153254259	154827251	392	0.1325	NEUTRAL	NA	4	"ARHGEF26,DHX36,GPR149,MME"
TCGA.AG.3909.01A	3	153993922	154018738	14	0.0895	NEUTRAL	NA	1	DHX36
TCGA.AA.A00Q.01A	3	153993922	158428520	169	-0.3567	NEUTRAL	NA	21	"C3orf33,CCNL1,DHX36,GFM1,GMPS,GPR149,KCNAB1,LEKR1,LXN,MLF1,MME,PLCH1,PQLC2L,PTX3,RARRES1,RSRC1,SHOX2,SLC33A1,SSR3,TIPARP,VEPH1"
TCGA.AA.A00N.01A	3	154018371	154857932	21	-0.198	NEUTRAL	NA	3	"DHX36,GPR149,MME"
TCGA.AG.3909.01A	3	154832736	156249142	77	0.2709	NEUTRAL	NA	6	"C3orf33,GMPS,KCNAB1,MME,PLCH1,SLC33A1"
TCGA.AA.A010.01A	3	154832736	158261961	139	-0.0602	NEUTRAL	NA	15	"C3orf33,CCNL1,GMPS,KCNAB1,LEKR1,MME,PLCH1,PQLC2L,PTX3,RSRC1,SHOX2,SLC33A1,SSR3,TIPARP,VEPH1"
TCGA.AA.3850	3	155151835	161057592	1579	-0.14575	NEUTRAL	NA	32	"ARL14,B3GALNT1,C3orf33,C3orf80,CCNL1,GFM1,GMPS,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MFSD1,MLF1,NMD3,PLCH1,PPM1L,PQLC2L,PTX3,RARRES1,RSRC1,SCHIP1,SHOX2,SLC33A1,SMC4,SSR3,TIPARP,TRIM59,VEPH1"
TCGA.CM.4752	3	155240613	191119136	10170	-0.0646	NEUTRAL	NA	162	Too-Many
TCGA.AA.3930.01A	3	155285966	155639938	27	0.2151	NEUTRAL	NA	4	"C3orf33,GMPS,PLCH1,SLC33A1"
TCGA.AA.A00N.01A	3	155481284	155570965	10	-0.507	NEUTRAL	NA	2	"C3orf33,SLC33A1"
TCGA.AA.3930.01A	3	155643003	157295994	63	-0.0625	NEUTRAL	NA	9	"CCNL1,GMPS,KCNAB1,LEKR1,PQLC2L,PTX3,SSR3,TIPARP,VEPH1"
TCGA.AG.3909.01A	3	156254401	156763112	16	-0.1376	NEUTRAL	NA	4	"KCNAB1,LEKR1,SSR3,TIPARP"
TCGA.AG.A00C.01A	3	156266655	156877135	20	0.2534	NEUTRAL	NA	4	"CCNL1,LEKR1,SSR3,TIPARP"
TCGA.AY.6196	3	156510521	197833757	11380	0.1702	NEUTRAL	NA	204	Too-Many
TCGA.F5.6702	3	156728609	197833757	11409	0.1175	NEUTRAL	NA	204	Too-Many
TCGA.AG.3909.01A	3	156877571	157295994	21	0.1482	NEUTRAL	NA	4	"CCNL1,PQLC2L,PTX3,VEPH1"
TCGA.AA.A00N.01A	3	156877571	157815774	23	0.2736	NEUTRAL	NA	5	"CCNL1,PQLC2L,PTX3,SHOX2,VEPH1"
TCGA.AG.A00C.01A	3	156978896	159614437	95	-0.0886	NEUTRAL	NA	13	"GFM1,IQCJ,IQCJ-SCHIP1,LXN,MFSD1,MLF1,PQLC2L,PTX3,RARRES1,RSRC1,SCHIP1,SHOX2,VEPH1"
TCGA.AA.3930.01A	3	157317952	158372281	31	-0.3966	NEUTRAL	NA	5	"GFM1,MLF1,PQLC2L,RSRC1,SHOX2"
TCGA.CM.6675	3	157514665	197833757	11153	0.2168	NEUTRAL	NA	199	Too-Many
TCGA.AA.3488	3	157732020	174442690	4419	0.3102	NEUTRAL	NA	58	"ACTRT3,ARL14,B3GALNT1,BCHE,C3orf80,CLDN11,ECT2,EIF5A2,FNDC3B,GFM1,GHSR,GOLIM4,GPR160,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KPNA4,LRRC31,LRRC34,LRRIQ4,LXN,MECOM,MFSD1,MLF1,MYNN,NCEH1,NLGN1,NMD3,OTOL1,PDCD10,PHC3,PLD1,PPM1L,PRKCI,RARRES1,RPL22L1,RSRC1,SAMD7,SCHIP1,SEC62,SERPINI1,SERPINI2,SHOX2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SMC4,SPATA16,SPTSSB,TMEM212,TNFSF10,TNIK,TRIM59,WDR49,ZBBX"
TCGA.AG.4009.01A	3	157823436	170020805	371	0.0016	NEUTRAL	NA	42	"ACTRT3,ARL14,B3GALNT1,BCHE,C3orf80,GFM1,GOLIM4,GPR160,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KPNA4,LRRC31,LRRC34,LRRIQ4,LXN,MECOM,MFSD1,MLF1,MYNN,NMD3,OTOL1,PDCD10,PHC3,PPM1L,PRKCI,RARRES1,RSRC1,SAMD7,SCHIP1,SEC62,SERPINI1,SERPINI2,SHOX2,SI,SLITRK3,SMC4,SPTSSB,TRIM59,WDR49,ZBBX"
TCGA.AG.3909.01A	3	157920814	158519911	41	0.2099	NEUTRAL	NA	6	"GFM1,LXN,MFSD1,MLF1,RARRES1,RSRC1"
TCGA.AA.A010.01A	3	158289012	160243548	116	0.2931	NEUTRAL	NA	14	"C3orf80,GFM1,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KPNA4,LXN,MFSD1,MLF1,RARRES1,SCHIP1,SMC4,TRIM59"
TCGA.AA.3930.01A	3	158376669	160804309	115	-0.002	NEUTRAL	NA	16	"ARL14,B3GALNT1,C3orf80,GFM1,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KPNA4,LXN,MFSD1,PPM1L,RARRES1,SCHIP1,SMC4,TRIM59"
TCGA.AA.A00O.01A	3	158407935	183777920	872	0.0239	NEUTRAL	NA	87	"ABCC5,ACTL6A,ACTRT3,ARL14,ATP11B,B3GALNT1,B3GNT5,BCHE,C3orf80,CCDC39,CLDN11,DCUN1D1,DNAJC19,ECT2,EIF5A2,FNDC3B,FXR1,GFM1,GHSR,GNB4,GOLIM4,GPR160,HTR3C,HTR3D,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KCNMB2,KCNMB3,KLHL24,KLHL6,KPNA4,LAMP3,LRRC31,LRRC34,LRRIQ4,MAP6D1,MCCC1,MCF2L2,MECOM,MFN1,MFSD1,MRPL47,MYNN,NAALADL2,NCEH1,NDUFB5,NLGN1,NMD3,OTOL1,PARL,PDCD10,PEX5L,PHC3,PIK3CA,PLD1,PPM1L,PRKCI,RARRES1,RPL22L1,SAMD7,SCHIP1,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SMC4,SOX2,SPATA16,SPTSSB,TBL1XR1,TMEM212,TNFSF10,TNIK,TRIM59,TTC14,USP13,WDR49,YEATS2,ZBBX,ZMAT3,ZNF639"
TCGA.AG.3909.01A	3	158537429	158546699	9	-0.1724	NEUTRAL	NA	1	MFSD1
TCGA.AA.A00N.01A	3	158539761	159707926	21	0.3478	NEUTRAL	NA	5	"IL12A,IQCJ,IQCJ-SCHIP1,MFSD1,SCHIP1"
TCGA.AA.A00Q.01A	3	158545001	164714306	102	-0.2675	NEUTRAL	NA	17	"ARL14,B3GALNT1,C3orf80,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KPNA4,MFSD1,NMD3,OTOL1,PPM1L,SCHIP1,SI,SMC4,SPTSSB,TRIM59"
TCGA.AG.3742	3	159377311	173250260	3573	0.0131	NEUTRAL	NA	50	"ACTRT3,ARL14,B3GALNT1,BCHE,C3orf80,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,IFT80,IL12A,IQCJ-SCHIP1,KPNA4,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,NLGN1,NMD3,OTOL1,PDCD10,PHC3,PLD1,PPM1L,PRKCI,RPL22L1,SAMD7,SCHIP1,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SMC4,SPATA16,SPTSSB,TMEM212,TNFSF10,TNIK,TRIM59,WDR49,ZBBX"
TCGA.AG.3909.01A	3	159707926	159713159	4	-0.4345	NEUTRAL	NA	1	IL12A
TCGA.AG.3909.01A	3	159976265	160095171	16	0.3155	NEUTRAL	NA	1	IFT80
TCGA.AG.A016.01A	3	159976265	160952869	67	-0.053	NEUTRAL	NA	8	"ARL14,B3GALNT1,IFT80,KPNA4,NMD3,PPM1L,SMC4,TRIM59"
TCGA.AG.A00C.01A	3	159986163	160025452	9	-0.2665	NEUTRAL	NA	1	IFT80
TCGA.AG.A00C.01A	3	160037501	160960249	61	0.1531	NEUTRAL	NA	8	"ARL14,B3GALNT1,IFT80,KPNA4,NMD3,PPM1L,SMC4,TRIM59"
TCGA.AA.A00D.01A	3	160073763	161220773	68	-0.255	NEUTRAL	NA	10	"ARL14,B3GALNT1,IFT80,KPNA4,NMD3,OTOL1,PPM1L,SMC4,SPTSSB,TRIM59"
TCGA.AG.3909.01A	3	160099254	160219853	25	-0.4414	NEUTRAL	NA	4	"IFT80,KPNA4,SMC4,TRIM59"
TCGA.AA.A00N.01A	3	160219853	160804309	22	0.2816	NEUTRAL	NA	4	"ARL14,B3GALNT1,KPNA4,PPM1L"
TCGA.AG.3909.01A	3	160222702	160804309	20	0.1455	NEUTRAL	NA	4	"ARL14,B3GALNT1,KPNA4,PPM1L"
TCGA.AA.A010.01A	3	160245687	167254610	118	-0.3119	NEUTRAL	NA	13	"ARL14,B3GALNT1,BCHE,KPNA4,NMD3,OTOL1,PPM1L,SERPINI2,SI,SLITRK3,SPTSSB,WDR49,ZBBX"
TCGA.AA.3862.01A	3	160254529	197896676	1808	0.2713	NEUTRAL	NA	185	Too-Many
TCGA.AG.3909.01A	3	160939767	160964076	11	-0.4554	NEUTRAL	NA	1	NMD3
TCGA.AG.3906.01A	3	160939767	160968561	15	-0.3549	NEUTRAL	NA	1	NMD3
TCGA.CK.4948.01B	3	160939767	164905653	65	0.3522	NEUTRAL	NA	5	"NMD3,OTOL1,SI,SLITRK3,SPTSSB"
TCGA.AA.3930.01A	3	160939767	167083618	87	-0.249	NEUTRAL	NA	7	"BCHE,NMD3,OTOL1,SI,SLITRK3,SPTSSB,ZBBX"
TCGA.AA.A00N.01A	3	160955889	161063914	10	-0.1879	NEUTRAL	NA	2	"NMD3,SPTSSB"
TCGA.AA.3815.01A	3	160956480	164737340	32	-0.3433	NEUTRAL	NA	4	"NMD3,OTOL1,SI,SPTSSB"
TCGA.AG.A00C.01A	3	160964076	169098955	146	-0.2171	NEUTRAL	NA	13	"BCHE,GOLIM4,MECOM,NMD3,OTOL1,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,SPTSSB,WDR49,ZBBX"
TCGA.AG.3909.01A	3	160964986	164793656	52	0.3597	NEUTRAL	NA	4	"NMD3,OTOL1,SI,SPTSSB"
TCGA.AG.3906.01A	3	161063914	169952981	203	-0.0611	NEUTRAL	NA	22	"ACTRT3,BCHE,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,OTOL1,PDCD10,PHC3,PRKCI,SAMD7,SEC62,SERPINI1,SERPINI2,SI,SLITRK3,SPTSSB,WDR49,ZBBX"
TCGA.AG.A016.01A	3	161220026	164793656	44	0.0624	NEUTRAL	NA	2	"OTOL1,SI"
TCGA.G4.6322	3	161666874	197833757	10104	0.021	NEUTRAL	NA	177	Too-Many
TCGA.AG.A01W.01A	3	162546545	170581663	146	0.2697	NEUTRAL	NA	23	"ACTRT3,BCHE,CLDN11,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,PDCD10,PHC3,PRKCI,SAMD7,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC7A14,SLITRK3,WDR49,ZBBX"
TCGA.EI.6885	3	162628911	175496865	3489	0.1628	NEUTRAL	NA	37	"ACTRT3,BCHE,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NAALADL2,NCEH1,NLGN1,PDCD10,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SPATA16,TMEM212,TNFSF10,TNIK,WDR49,ZBBX"
TCGA.F4.6463	3	162914348	197833757	9769	0.3261	NEUTRAL	NA	177	Too-Many
TCGA.AA.3977	3	162971105	173377064	2682	-0.0223	NEUTRAL	NA	36	"ACTRT3,BCHE,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,NLGN1,PDCD10,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SPATA16,TMEM212,TNFSF10,TNIK,WDR49,ZBBX"
TCGA.NH.A50U	3	163168586	187123035	6431	0.0245	NEUTRAL	NA	113	Too-Many
TCGA.G4.6310	3	164248029	175027802	2989	0.0028	NEUTRAL	NA	37	"ACTRT3,BCHE,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NAALADL2,NCEH1,NLGN1,PDCD10,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SPATA16,TMEM212,TNFSF10,TNIK,WDR49,ZBBX"
TCGA.AA.3815.01A	3	164738970	197894675	1761	-0.015	NEUTRAL	NA	178	Too-Many
TCGA.AG.3909.01A	3	164905653	164907787	3	-0.5143	NEUTRAL	NA	1	SLITRK3
TCGA.AG.A016.01A	3	164905653	167033481	13	-0.2793	NEUTRAL	NA	3	"BCHE,SLITRK3,ZBBX"
TCGA.AA.A02H.01A	3	164905653	169514486	106	0.2735	NEUTRAL	NA	12	"ACTRT3,BCHE,GOLIM4,LRRC34,MECOM,MYNN,PDCD10,SERPINI1,SERPINI2,SLITRK3,WDR49,ZBBX"
TCGA.AA.3967.01A	3	164905653	197616404	1654	-0.2328	NEUTRAL	NA	174	Too-Many
TCGA.CK.4948.01B	3	164907253	197896676	1764	-0.057	NEUTRAL	NA	177	Too-Many
TCGA.DY.A1DG	3	165320812	197833757	9336	0.0155	NEUTRAL	NA	175	Too-Many
TCGA.CK.5914.01A	3	165491122	167023423	9	0.1391	NEUTRAL	NA	2	"BCHE,ZBBX"
TCGA.AG.3909.01A	3	165491122	168840326	86	0.3557	NEUTRAL	NA	8	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,WDR49,ZBBX"
TCGA.BM.6198	3	165657282	197833757	9236	-0.09865	NEUTRAL	NA	174	Too-Many
TCGA.AA.3693	3	165885051	174387441	2465	0.3173	NEUTRAL	NA	33	"ACTRT3,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,NLGN1,PDCD10,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SERPINI1,SERPINI2,SKIL,SLC2A2,SLC7A14,SPATA16,TMEM212,TNFSF10,TNIK,WDR49,ZBBX"
TCGA.AA.3982	3	165960404	169257855	821	-0.4077	NEUTRAL	NA	7	"GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,WDR49,ZBBX"
TCGA.EI.7002	3	165960404	197833757	9142	-0.4448	NEUTRAL	NA	174	Too-Many
TCGA.AG.A016.01A	3	167034746	167090559	11	0.0579	NEUTRAL	NA	1	ZBBX
TCGA.CK.5914.01A	3	167090559	167184816	7	-0.2571	NEUTRAL	NA	2	"SERPINI2,ZBBX"
TCGA.AG.A016.01A	3	167182983	168818632	55	-0.0515	NEUTRAL	NA	6	"GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,WDR49"
TCGA.AA.3930.01A	3	167182983	169546500	87	-0.1372	NEUTRAL	NA	10	"ACTRT3,GOLIM4,LRRC34,LRRIQ4,MECOM,MYNN,PDCD10,SERPINI1,SERPINI2,WDR49"
TCGA.DM.A28M.01A	3	167223046	197896676	1734	-0.0877	NEUTRAL	NA	173	Too-Many
TCGA.CK.5914.01A	3	167508123	167766016	22	-0.2305	NEUTRAL	NA	2	"GOLIM4,SERPINI1"
TCGA.AA.3685	3	167666283	197833757	8839	0.2039	NEUTRAL	NA	169	Too-Many
TCGA.AA.A01Q.01A	3	168269588	178525135	205	0.1628	NEUTRAL	NA	30	"ACTRT3,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GPR160,KCNMB2,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NAALADL2,NCEH1,NLGN1,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK"
TCGA.SS.A7HO	3	168727079	183201564	4093	0.0576	NEUTRAL	NA	52	"ACTL6A,ACTRT3,ATP11B,B3GNT5,CCDC39,CLDN11,DCUN1D1,DNAJC19,ECT2,EIF5A2,FNDC3B,FXR1,GHSR,GNB4,GPR160,KCNMB2,KCNMB3,LAMP3,LRRC31,LRRC34,LRRIQ4,MCCC1,MCF2L2,MECOM,MFN1,MRPL47,MYNN,NAALADL2,NCEH1,NDUFB5,NLGN1,PEX5L,PHC3,PIK3CA,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,SOX2,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK,TTC14,USP13,ZMAT3,ZNF639"
TCGA.AG.A016.01A	3	168819797	169500204	18	-0.4021	NEUTRAL	NA	3	"ACTRT3,MECOM,MYNN"
TCGA.AA.A00K.01A	3	168825631	183882003	493	-0.3822	NEUTRAL	NA	63	"ABCC5,ACTL6A,ACTRT3,ATP11B,B3GNT5,CCDC39,CLDN11,DCUN1D1,DNAJC19,DVL3,ECT2,EIF2B5,EIF5A2,FNDC3B,FXR1,GHSR,GNB4,GPR160,HTR3C,HTR3D,HTR3E,KCNMB2,KCNMB3,KLHL24,KLHL6,LAMP3,LRRC31,LRRC34,LRRIQ4,MAP6D1,MCCC1,MCF2L2,MECOM,MFN1,MRPL47,MYNN,NAALADL2,NCEH1,NDUFB5,NLGN1,PARL,PEX5L,PHC3,PIK3CA,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,SOX2,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK,TTC14,USP13,YEATS2,ZMAT3,ZNF639"
TCGA.AA.A00Q.01A	3	168825631	197765401	1322	-0.3057	NEUTRAL	NA	168	Too-Many
TCGA.AG.3909.01A	3	168845615	169098955	5	-0.0752	NEUTRAL	NA	1	MECOM
TCGA.AA.A00L.01A	3	168849165	172534430	180	-0.3827	NEUTRAL	NA	25	"ACTRT3,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,TMEM212,TNFSF10,TNIK"
TCGA.AA.A00D.01A	3	168849165	186330883	731	-0.4039	NEUTRAL	NA	93	"ABCC5,ABCF3,ACTL6A,ACTRT3,AHSG,ALG3,AP2M1,ATP11B,B3GNT5,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,CLDN11,CRYGS,DCUN1D1,DGKG,DNAJB11,DNAJC19,DVL3,ECE2,ECT2,EHHADH,EIF2B5,EIF4G1,EIF5A2,EPHB3,ETV5,FAM131A,FNDC3B,FXR1,GHSR,GNB4,GPR160,HTR3C,HTR3D,HTR3E,IGF2BP2,KCNMB2,KCNMB3,KLHL24,KLHL6,LAMP3,LIPH,LRRC31,LRRC34,LRRIQ4,MAGEF1,MAP3K13,MAP6D1,MCCC1,MCF2L2,MECOM,MFN1,MRPL47,MYNN,NAALADL2,NCEH1,NDUFB5,NLGN1,PARL,PEX5L,PHC3,PIK3CA,PLD1,POLR2H,PRKCI,PSMD2,RPL22L1,SAMD7,SEC62,SENP2,SKIL,SLC2A2,SLC7A14,SOX2,SPATA16,TBCCD1,TBL1XR1,THPO,TMEM212,TMEM41A,TNFSF10,TNIK,TRA2B,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZMAT3,ZNF639"
TCGA.CK.5914.01A	3	168861435	169703532	49	-0.3568	NEUTRAL	NA	8	"ACTRT3,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,SAMD7,SEC62"
TCGA.A6.3808.01A	3	168862690	170020805	83	-0.2889	NEUTRAL	NA	11	"ACTRT3,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,PHC3,PRKCI,SAMD7,SEC62"
TCGA.AA.A00F.01A	3	169098955	169637241	20	0.2998	NEUTRAL	NA	7	"ACTRT3,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,SAMD7"
TCGA.QG.A5YX	3	169182186	197833757	8306	0.1232	NEUTRAL	NA	168	Too-Many
TCGA.AA.3850	3	169223179	169510275	82	-0.11255	NEUTRAL	NA	3	"ACTRT3,MECOM,MYNN"
TCGA.AA.3941	3	169223179	169510275	82	0.061	NEUTRAL	NA	3	"ACTRT3,MECOM,MYNN"
TCGA.AA.3982	3	169262882	172490551	1019	0.0767	NEUTRAL	NA	25	"ACTRT3,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,TMEM212,TNFSF10,TNIK"
TCGA.AA.3811	3	169262882	172587873	1038	-0.1491	NEUTRAL	NA	25	"ACTRT3,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,TMEM212,TNFSF10,TNIK"
TCGA.AA.3844	3	169262882	172596080	1045	-0.0615	NEUTRAL	NA	25	"ACTRT3,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,TMEM212,TNFSF10,TNIK"
TCGA.AY.A71X	3	169304894	197833757	8327	0.0156	NEUTRAL	NA	168	Too-Many
TCGA.AG.A00C.01A	3	169381045	169550737	22	0.3418	NEUTRAL	NA	5	"ACTRT3,LRRC34,LRRIQ4,MECOM,MYNN"
TCGA.AA.3712	3	169393675	174583170	1640	0.3275	NEUTRAL	NA	27	"ACTRT3,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GPR160,LRRC31,LRRC34,LRRIQ4,MYNN,NAALADL2,NCEH1,NLGN1,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,SPATA16,TMEM212,TNFSF10,TNIK"
TCGA.AG.A016.01A	3	169501210	183508538	552	-0.0804	NEUTRAL	NA	53	"ACTL6A,ATP11B,B3GNT5,CCDC39,CLDN11,DCUN1D1,DNAJC19,ECT2,EIF5A2,FNDC3B,FXR1,GHSR,GNB4,GPR160,KCNMB2,KCNMB3,KLHL24,KLHL6,LAMP3,LRRC31,LRRC34,LRRIQ4,MCCC1,MCF2L2,MFN1,MRPL47,MYNN,NAALADL2,NCEH1,NDUFB5,NLGN1,PEX5L,PHC3,PIK3CA,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,SOX2,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK,TTC14,USP13,YEATS2,ZMAT3,ZNF639"
TCGA.AA.3509.01A	3	169521791	169693349	27	-0.3143	NEUTRAL	NA	5	"LRRC31,LRRC34,LRRIQ4,SAMD7,SEC62"
TCGA.AZ.4684.01A	3	169521791	169693349	27	-0.2037	NEUTRAL	NA	5	"LRRC31,LRRC34,LRRIQ4,SAMD7,SEC62"
TCGA.AA.A02H.01A	3	169521791	169700905	29	-0.3963	NEUTRAL	NA	5	"LRRC31,LRRC34,LRRIQ4,SAMD7,SEC62"
TCGA.AG.3909.01A	3	169539663	171443739	149	0.2483	NEUTRAL	NA	15	"CLDN11,EIF5A2,GPR160,LRRC31,LRRIQ4,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,TNIK"
TCGA.AA.3930.01A	3	169548233	169656058	19	0.312	NEUTRAL	NA	3	"LRRC31,LRRIQ4,SAMD7"
TCGA.AA.A00N.01A	3	169548233	170587866	80	0.2368	NEUTRAL	NA	11	"CLDN11,GPR160,LRRC31,LRRIQ4,PHC3,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC7A14"
TCGA.AG.A00C.01A	3	169555217	171443739	144	-0.074	NEUTRAL	NA	15	"CLDN11,EIF5A2,GPR160,LRRC31,LRRIQ4,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,TNIK"
TCGA.AA.A00F.01A	3	169638975	182763160	349	-0.0705	NEUTRAL	NA	43	"ACTL6A,ATP11B,CCDC39,CLDN11,DCUN1D1,DNAJC19,ECT2,EIF5A2,FNDC3B,FXR1,GHSR,GNB4,GPR160,KCNMB2,KCNMB3,MCCC1,MFN1,MRPL47,NAALADL2,NCEH1,NDUFB5,NLGN1,PEX5L,PHC3,PIK3CA,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SKIL,SLC2A2,SLC7A14,SOX2,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK,TTC14,USP13,ZMAT3,ZNF639"
TCGA.AA.3850	3	169676753	169702711	13	-0.23925	NEUTRAL	NA	1	SEC62
TCGA.AA.3930.01A	3	169684527	169940421	24	-0.094	NEUTRAL	NA	4	"GPR160,PHC3,PRKCI,SEC62"
TCGA.AA.A02H.01A	3	169703532	179576799	341	0.123	NEUTRAL	NA	34	"ACTL6A,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GNB4,GPR160,KCNMB2,KCNMB3,MFN1,MRPL47,NAALADL2,NCEH1,NDUFB5,NLGN1,PEX5L,PHC3,PIK3CA,PLD1,PRKCI,RPL22L1,SEC62,SKIL,SLC2A2,SLC7A14,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK,USP13,ZMAT3,ZNF639"
TCGA.AA.3509.01A	3	169820217	169889128	10	0.0274	NEUTRAL	NA	1	PHC3
TCGA.AZ.4684.01A	3	169820217	169896514	12	-0.0319	NEUTRAL	NA	1	PHC3
TCGA.CK.5914.01A	3	169866823	170625404	47	-0.2834	NEUTRAL	NA	7	"CLDN11,EIF5A2,PHC3,PRKCI,RPL22L1,SKIL,SLC7A14"
TCGA.AA.3930.01A	3	169952981	170020805	17	0.2946	NEUTRAL	NA	1	PRKCI
TCGA.AG.3906.01A	3	169977702	170079143	18	0.3318	NEUTRAL	NA	2	"PRKCI,SKIL"
TCGA.AG.4009.01A	3	170078090	170150305	9	-0.4528	NEUTRAL	NA	2	"CLDN11,SKIL"
TCGA.AA.3930.01A	3	170078090	176782670	195	-0.0501	NEUTRAL	NA	18	"CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,NAALADL2,NCEH1,NLGN1,PLD1,RPL22L1,SKIL,SLC2A2,SLC7A14,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK"
TCGA.AG.3906.01A	3	170098995	179322566	273	-0.078	NEUTRAL	NA	27	"ACTL6A,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GNB4,KCNMB2,KCNMB3,MFN1,MRPL47,NAALADL2,NCEH1,NLGN1,PIK3CA,PLD1,RPL22L1,SKIL,SLC2A2,SLC7A14,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK,ZMAT3,ZNF639"
TCGA.AA.3509.01A	3	170110015	172477899	130	0.148	NEUTRAL	NA	14	"CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,NCEH1,PLD1,RPL22L1,SKIL,SLC2A2,SLC7A14,TMEM212,TNFSF10,TNIK"
TCGA.AZ.4684.01A	3	170110015	172477899	130	0.1641	NEUTRAL	NA	14	"CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,NCEH1,PLD1,RPL22L1,SKIL,SLC2A2,SLC7A14,TMEM212,TNFSF10,TNIK"
TCGA.A6.3808.01A	3	170136827	170720328	20	-0.1325	NEUTRAL	NA	5	"CLDN11,EIF5A2,RPL22L1,SLC2A2,SLC7A14"
TCGA.AG.4009.01A	3	170184856	178962266	212	0.0392	NEUTRAL	NA	20	"ECT2,EIF5A2,FNDC3B,GHSR,KCNMB2,KCNMB3,NAALADL2,NCEH1,NLGN1,PIK3CA,PLD1,RPL22L1,SLC2A2,SLC7A14,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK,ZMAT3"
TCGA.AA.3850	3	170253806	170812287	138	-0.14625	NEUTRAL	NA	5	"EIF5A2,RPL22L1,SLC2A2,SLC7A14,TNIK"
TCGA.AA.3941	3	170410117	171132803	239	-0.1148	NEUTRAL	NA	4	"EIF5A2,RPL22L1,SLC2A2,TNIK"
TCGA.AA.A010.01A	3	170732286	170828471	19	0.0595	NEUTRAL	NA	2	"SLC2A2,TNIK"
TCGA.AA.3850	3	170826683	171140826	138	-0.23305	NEUTRAL	NA	1	TNIK
TCGA.AG.A01W.01A	3	170974752	171183608	43	-0.1345	NEUTRAL	NA	1	TNIK
TCGA.AA.3941	3	171139466	172596080	515	0.26	NEUTRAL	NA	8	"ECT2,FNDC3B,GHSR,NCEH1,PLD1,TMEM212,TNFSF10,TNIK"
TCGA.AA.3850	3	171145710	172596080	513	0.17655	NEUTRAL	NA	8	"ECT2,FNDC3B,GHSR,NCEH1,PLD1,TMEM212,TNFSF10,TNIK"
TCGA.AG.A01W.01A	3	171186219	171345854	13	0.3091	NEUTRAL	NA	1	PLD1
TCGA.AG.A01W.01A	3	171349518	171484927	16	-0.3065	NEUTRAL	NA	1	PLD1
TCGA.CK.5914.01A	3	171360558	172428585	60	0.1428	NEUTRAL	NA	6	"FNDC3B,GHSR,NCEH1,PLD1,TMEM212,TNFSF10"
TCGA.AG.A01W.01A	3	171492289	185518149	667	0.0297	NEUTRAL	NA	68	"ABCC5,ABCF3,ACTL6A,ALG3,AP2M1,ATP11B,B3GNT5,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,DCUN1D1,DNAJC19,DVL3,ECE2,ECT2,EHHADH,EIF2B5,EIF4G1,EPHB3,FAM131A,FNDC3B,FXR1,GHSR,GNB4,HTR3C,HTR3D,HTR3E,IGF2BP2,KCNMB2,KCNMB3,KLHL24,KLHL6,LAMP3,LIPH,MAGEF1,MAP3K13,MAP6D1,MCCC1,MCF2L2,MFN1,MRPL47,NAALADL2,NCEH1,NDUFB5,NLGN1,PARL,PEX5L,PIK3CA,PLD1,POLR2H,PSMD2,SENP2,SOX2,SPATA16,TBL1XR1,THPO,TMEM212,TMEM41A,TNFSF10,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZMAT3,ZNF639"
TCGA.AG.3909.01A	3	171830218	178560414	105	0.3294	NEUTRAL	NA	10	"ECT2,FNDC3B,GHSR,KCNMB2,NAALADL2,NCEH1,NLGN1,SPATA16,TBL1XR1,TNFSF10"
TCGA.AG.A00C.01A	3	171830218	182763160	315	-0.1092	NEUTRAL	NA	29	"ACTL6A,ATP11B,CCDC39,DCUN1D1,DNAJC19,ECT2,FNDC3B,FXR1,GHSR,GNB4,KCNMB2,KCNMB3,MCCC1,MFN1,MRPL47,NAALADL2,NCEH1,NDUFB5,NLGN1,PEX5L,PIK3CA,SOX2,SPATA16,TBL1XR1,TNFSF10,TTC14,USP13,ZMAT3,ZNF639"
TCGA.F4.6460	3	171998242	172089252	38	-0.3446	NEUTRAL	NA	1	FNDC3B
TCGA.AA.A02K.01A	3	172060755	172070566	5	0.2669	NEUTRAL	NA	1	FNDC3B
TCGA.AA.A02K.01A	3	172080407	175041925	58	-0.1109	NEUTRAL	NA	8	"ECT2,FNDC3B,GHSR,NAALADL2,NCEH1,NLGN1,SPATA16,TNFSF10"
TCGA.F4.6460	3	172089283	174374640	756	0.0776	NEUTRAL	NA	7	"ECT2,FNDC3B,GHSR,NCEH1,NLGN1,SPATA16,TNFSF10"
TCGA.CK.5914.01A	3	172476718	178560414	64	0.3157	NEUTRAL	NA	6	"ECT2,KCNMB2,NAALADL2,NLGN1,SPATA16,TBL1XR1"
TCGA.AA.A010.01A	3	172502449	174951709	28	-0.2121	NEUTRAL	NA	4	"ECT2,NAALADL2,NLGN1,SPATA16"
TCGA.AA.3982	3	172527087	176522999	1235	-0.5098	NEUTRAL	NA	4	"ECT2,NAALADL2,NLGN1,SPATA16"
TCGA.AA.3850	3	172601976	172872727	81	-0.30745	NEUTRAL	NA	1	SPATA16
TCGA.AA.3844	3	172601976	176415164	1175	-0.4855	NEUTRAL	NA	3	"NAALADL2,NLGN1,SPATA16"
TCGA.D5.5540	3	172905781	173412728	157	0.0312	NEUTRAL	NA	1	NLGN1
TCGA.AF.A56L	3	173134642	175049293	653	-0.0164	NEUTRAL	NA	2	"NAALADL2,NLGN1"
TCGA.NH.A6GA	3	173218791	197833757	7113	0.0129	NEUTRAL	NA	142	Too-Many
TCGA.AG.3742	3	173301036	176249182	939	-0.0034	NEUTRAL	NA	2	"NAALADL2,NLGN1"
TCGA.AD.6888	3	173301036	197833757	7092	0.268	NEUTRAL	NA	142	Too-Many
TCGA.AA.3977	3	173412728	197833757	7035	0.0216	NEUTRAL	NA	142	Too-Many
TCGA.AA.3966	3	173896098	186396536	3296	-0.1838	NEUTRAL	NA	69	"ABCC5,ABCF3,ACTL6A,AHSG,ALG3,AP2M1,ATP11B,B3GNT5,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,CRYGS,DCUN1D1,DGKG,DNAJB11,DNAJC19,DVL3,ECE2,EHHADH,EIF2B5,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,FXR1,GNB4,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KCNMB2,KCNMB3,KLHL24,KLHL6,LAMP3,LIPH,MAGEF1,MAP3K13,MAP6D1,MCCC1,MCF2L2,MFN1,MRPL47,NAALADL2,NDUFB5,NLGN1,PARL,PEX5L,PIK3CA,POLR2H,PSMD2,SENP2,SOX2,TBCCD1,TBL1XR1,THPO,TMEM41A,TRA2B,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZMAT3,ZNF639"
TCGA.AA.A00N.01A	3	173993098	174814580	6	-0.0494	NEUTRAL	NA	2	"NAALADL2,NLGN1"
TCGA.F4.6459	3	174190023	174403099	69	-0.4342	NEUTRAL	NA	0	None
TCGA.D5.6532	3	174332807	197833757	6750	0.0137	NEUTRAL	NA	141	Too-Many
TCGA.AA.3693	3	174391906	174485353	26	-0.384	NEUTRAL	NA	0	None
TCGA.F4.6459	3	174418537	185079720	2730	-0.0088	NEUTRAL	NA	55	"ABCC5,ABCF3,ACTL6A,ALG3,AP2M1,ATP11B,B3GNT5,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,DCUN1D1,DNAJC19,DVL3,ECE2,EHHADH,EIF2B5,EIF4G1,EPHB3,FAM131A,FXR1,GNB4,HTR3C,HTR3D,HTR3E,KCNMB2,KCNMB3,KLHL24,KLHL6,LAMP3,MAGEF1,MAP3K13,MAP6D1,MCCC1,MCF2L2,MFN1,MRPL47,NAALADL2,NDUFB5,PARL,PEX5L,PIK3CA,POLR2H,PSMD2,SOX2,TBL1XR1,THPO,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZMAT3,ZNF639"
TCGA.AA.3488	3	174442853	174923525	156	0.0156	NEUTRAL	NA	1	NAALADL2
TCGA.AA.3697	3	174443660	197833757	6704	-0.2263	NEUTRAL	NA	141	Too-Many
TCGA.F4.6460	3	174467000	174701884	69	-0.0022	NEUTRAL	NA	1	NAALADL2
TCGA.AA.3693	3	174485600	197833757	6707	0.3307	NEUTRAL	NA	141	Too-Many
TCGA.EI.6508	3	174511327	174590645	33	0.2234	NEUTRAL	NA	1	NAALADL2
TCGA.EI.6509	3	174550757	175962149	439	0.0609	NEUTRAL	NA	1	NAALADL2
TCGA.AA.3679	3	174563660	174897989	115	0.1317	NEUTRAL	NA	1	NAALADL2
TCGA.AA.3712	3	174585061	175064808	162	0.0049	NEUTRAL	NA	1	NAALADL2
TCGA.AG.3726	3	174640267	175417372	292	0.0172	NEUTRAL	NA	1	NAALADL2
TCGA.T9.A92H	3	174646602	174689919	15	-0.2637	NEUTRAL	NA	1	NAALADL2
TCGA.EI.6507	3	174680308	174893297	75	-0.5125	NEUTRAL	NA	1	NAALADL2
TCGA.AG.3599	3	174684923	197833757	6639	0.0067	NEUTRAL	NA	141	Too-Many
TCGA.F4.6460	3	174704228	174986158	106	-0.275	NEUTRAL	NA	1	NAALADL2
TCGA.AA.A01T	3	174716690	175137038	170	-0.398	NEUTRAL	NA	1	NAALADL2
TCGA.CM.5861	3	174737010	197833757	6620	-0.0026	NEUTRAL	NA	141	Too-Many
TCGA.EI.6508	3	174788420	197833757	6606	0.0759	NEUTRAL	NA	141	Too-Many
TCGA.5M.AAT4	3	174830349	175060123	82	-0.1802	NEUTRAL	NA	1	NAALADL2
TCGA.DM.A28C	3	174836131	197833757	6582	-0.0102	NEUTRAL	NA	141	Too-Many
TCGA.G4.6294	3	174836654	174991089	58	0.0548	NEUTRAL	NA	1	NAALADL2
TCGA.T9.A92H	3	174887822	175159621	117	-0.3001	NEUTRAL	NA	1	NAALADL2
TCGA.AD.6548	3	174889682	197833757	6554	0.0235	NEUTRAL	NA	141	Too-Many
TCGA.EI.6507	3	174893774	197833757	6568	0.0081	NEUTRAL	NA	141	Too-Many
TCGA.DC.6682	3	174898445	197833757	6561	0.0917	NEUTRAL	NA	141	Too-Many
TCGA.CI.6623	3	174899111	175028242	49	-0.454	NEUTRAL	NA	1	NAALADL2
TCGA.A6.3807	3	174924017	197833757	6534	0.0592	NEUTRAL	NA	141	Too-Many
TCGA.AA.3488	3	174924017	197833757	6548	0.3321	NEUTRAL	NA	141	Too-Many
TCGA.AG.3592	3	174956832	175186190	99	-0.3677	NEUTRAL	NA	1	NAALADL2
TCGA.DC.4745	3	174976675	175035713	27	-0.1475	NEUTRAL	NA	1	NAALADL2
TCGA.A6.5666	3	174986158	197833757	6525	-5.00E-04	NEUTRAL	NA	141	Too-Many
TCGA.F4.6460	3	174990763	188644676	3868	0.0484	NEUTRAL	NA	81	"ABCC5,ABCF3,ACTL6A,ADIPOQ,AHSG,ALG3,AP2M1,ATP11B,B3GNT5,BCL6,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,CRYGS,DCUN1D1,DGKG,DNAJB11,DNAJC19,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,FXR1,GNB4,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KCNMB2,KCNMB3,KLHL24,KLHL6,KNG1,LAMP3,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,MCCC1,MCF2L2,MFN1,MRPL47,NAALADL2,NDUFB5,PARL,PEX5L,PIK3CA,POLR2H,PSMD2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SOX2,SST,ST6GAL1,TBCCD1,TBL1XR1,THPO,TMEM41A,TRA2B,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZMAT3,ZNF639"
TCGA.CA.5797	3	175027802	175515096	167	-0.3002	NEUTRAL	NA	1	NAALADL2
TCGA.DC.4745	3	175049183	197833757	6513	0.3643	NEUTRAL	NA	141	Too-Many
TCGA.AF.A56L	3	175060123	175228371	88	-0.392	NEUTRAL	NA	1	NAALADL2
TCGA.CI.6623	3	175062898	175250533	99	-0.4537	NEUTRAL	NA	1	NAALADL2
TCGA.5M.AAT4	3	175062898	197833757	6509	0.2982	NEUTRAL	NA	141	Too-Many
TCGA.AD.6901	3	175067593	175171065	40	-0.3585	NEUTRAL	NA	1	NAALADL2
TCGA.G4.6310	3	175068934	175229747	75	-0.3458	NEUTRAL	NA	1	NAALADL2
TCGA.AZ.4614	3	175068934	175365836	123	-0.0598	NEUTRAL	NA	1	NAALADL2
TCGA.NH.A50T	3	175069678	197833757	6438	0.0581	NEUTRAL	NA	141	Too-Many
TCGA.AA.3517	3	175087883	197833757	6490	-0.2997	NEUTRAL	NA	141	Too-Many
TCGA.AG.3894	3	175087883	197833757	6472	0.0092	NEUTRAL	NA	141	Too-Many
TCGA.DM.A1HA	3	175087883	197833757	6489	0.0317	NEUTRAL	NA	141	Too-Many
TCGA.CA.6716	3	175090241	197833757	6474	-0.2655	NEUTRAL	NA	141	Too-Many
TCGA.AG.A026	3	175118110	175490669	118	-0.3855	NEUTRAL	NA	1	NAALADL2
TCGA.AA.A01T	3	175143296	197833757	6459	0.0793	NEUTRAL	NA	141	Too-Many
TCGA.D5.6535	3	175147305	175309769	69	-0.0724	NEUTRAL	NA	1	NAALADL2
TCGA.AD.6901	3	175171414	197833757	6440	0.0495	NEUTRAL	NA	141	Too-Many
TCGA.AG.3592	3	175186652	197833757	6448	0.3459	NEUTRAL	NA	141	Too-Many
TCGA.AA.3860	3	175190424	197833757	6446	0.0304	NEUTRAL	NA	141	Too-Many
TCGA.AA.3664	3	175195489	175490669	89	-0.0656	NEUTRAL	NA	1	NAALADL2
TCGA.AF.A56L	3	175229152	197833757	6412	0.0038	NEUTRAL	NA	141	Too-Many
TCGA.G4.6310	3	175233398	197833757	6420	-0.0077	NEUTRAL	NA	141	Too-Many
TCGA.AA.3712	3	175240310	175496865	64	-0.0878	NEUTRAL	NA	1	NAALADL2
TCGA.CI.6623	3	175262418	182427686	1725	0.0547	NEUTRAL	NA	19	"ACTL6A,CCDC39,DNAJC19,FXR1,GNB4,KCNMB2,KCNMB3,MFN1,MRPL47,NAALADL2,NDUFB5,PEX5L,PIK3CA,SOX2,TBL1XR1,TTC14,USP13,ZMAT3,ZNF639"
TCGA.CL.4957	3	175288978	197833757	6405	0.3136	NEUTRAL	NA	141	Too-Many
TCGA.D5.6535	3	175324422	197833757	6396	0.2798	NEUTRAL	NA	141	Too-Many
TCGA.T9.A92H	3	175338776	197833757	6383	-0.2648	NEUTRAL	NA	141	Too-Many
TCGA.D5.6536	3	175429485	176404197	240	0.3523	NEUTRAL	NA	1	NAALADL2
TCGA.AA.A02K.01A	3	175455075	186435361	752	0.0119	NEUTRAL	NA	69	"ABCC5,ABCF3,ACTL6A,AHSG,ALG3,AP2M1,ATP11B,B3GNT5,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,CRYGS,DCUN1D1,DGKG,DNAJB11,DNAJC19,DVL3,ECE2,EHHADH,EIF2B5,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,FXR1,GNB4,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KCNMB2,KCNMB3,KLHL24,KLHL6,KNG1,LAMP3,LIPH,MAGEF1,MAP3K13,MAP6D1,MCCC1,MCF2L2,MFN1,MRPL47,NAALADL2,NDUFB5,PARL,PEX5L,PIK3CA,POLR2H,PSMD2,SENP2,SOX2,TBCCD1,TBL1XR1,THPO,TMEM41A,TRA2B,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZMAT3,ZNF639"
TCGA.DM.A282.01A	3	175455084	197896676	1407	-0.0057	NEUTRAL	NA	142	Too-Many
TCGA.AG.A026	3	175496865	197833757	6349	0.052	NEUTRAL	NA	141	Too-Many
TCGA.AA.3712	3	175507157	197833757	6353	0.2884	NEUTRAL	NA	141	Too-Many
TCGA.AZ.4315	3	175507157	197833757	6344	-0.0013	NEUTRAL	NA	141	Too-Many
TCGA.EI.6885	3	175507157	197833757	6339	-0.3076	NEUTRAL	NA	141	Too-Many
TCGA.DM.A28H	3	175507452	197833757	6345	0.0304	NEUTRAL	NA	141	Too-Many
TCGA.CA.5797	3	175515775	197833757	6343	0.0204	NEUTRAL	NA	141	Too-Many
TCGA.AG.3727	3	175557999	197833757	6342	0.0345	NEUTRAL	NA	140	Too-Many
TCGA.A6.6780	3	175579596	197833757	6321	0.023	NEUTRAL	NA	140	Too-Many
TCGA.EI.6509	3	175969459	176542718	171	-0.4831	NEUTRAL	NA	0	None
TCGA.AA.3811	3	176014494	182633726	1604	-0.3303	NEUTRAL	NA	19	"ACTL6A,ATP11B,CCDC39,DNAJC19,FXR1,GNB4,KCNMB2,KCNMB3,MFN1,MRPL47,NDUFB5,PEX5L,PIK3CA,SOX2,TBL1XR1,TTC14,USP13,ZMAT3,ZNF639"
TCGA.AA.3941	3	176296483	176482892	44	-0.3216	NEUTRAL	NA	0	None
TCGA.D5.6536	3	176407855	197833757	6125	-0.1557	NEUTRAL	NA	140	Too-Many
TCGA.AA.3844	3	176430560	193152407	5032	-0.1555	NEUTRAL	NA	97	"ABCC5,ABCF3,ACTL6A,ADIPOQ,AHSG,ALG3,AP2M1,ATP11B,ATP13A4,ATP13A5,B3GNT5,BCL6,C3orf70,CAMK2N2,CCDC39,CCDC50,CHRD,CLCN2,CLDN1,CLDN16,CRYGS,DCUN1D1,DGKG,DNAJB11,DNAJC19,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,FGF12,FXR1,GMNC,GNB4,HRASLS,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,IL1RAP,KCNMB2,KCNMB3,KLHL24,KLHL6,KNG1,LAMP3,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,MB21D2,MCCC1,MCF2L2,MFN1,MRPL47,NDUFB5,OSTN,P3H2,PARL,PEX5L,PIK3CA,POLR2H,PSMD2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SOX2,SST,ST6GAL1,TBCCD1,TBL1XR1,THPO,TMEM207,TMEM41A,TP63,TPRG1,TRA2B,TTC14,USP13,UTS2B,VPS8,VWA5B2,YEATS2,ZMAT3,ZNF639"
TCGA.AA.3941	3	176485784	176593661	44	0.32	NEUTRAL	NA	0	None
TCGA.AA.3850	3	176495124	177338279	255	0.20335	NEUTRAL	NA	1	TBL1XR1
TCGA.AA.3982	3	176523203	177338279	240	0.1996	NEUTRAL	NA	1	TBL1XR1
TCGA.EI.6509	3	176543286	197833757	6079	0.0199	NEUTRAL	NA	140	Too-Many
TCGA.AA.3941	3	176597214	176661422	28	-0.0569	NEUTRAL	NA	0	None
TCGA.AH.6549.01A	3	176743203	197896676	1404	-0.4052	NEUTRAL	NA	141	Too-Many
TCGA.A6.3808.01A	3	176768218	178957727	33	-0.2317	NEUTRAL	NA	5	"KCNMB2,KCNMB3,PIK3CA,TBL1XR1,ZMAT3"
TCGA.AA.3982	3	177342467	177719622	131	-0.2243	NEUTRAL	NA	0	None
TCGA.AA.3850	3	177342467	178739593	398	-0.39815	NEUTRAL	NA	2	"KCNMB2,ZMAT3"
TCGA.AA.3941	3	177342467	178739593	399	-0.3191	NEUTRAL	NA	2	"KCNMB2,ZMAT3"
TCGA.AA.3982	3	178146974	178739593	175	-0.1828	NEUTRAL	NA	2	"KCNMB2,ZMAT3"
TCGA.AA.3930.01A	3	178525135	178927346	15	-0.3961	NEUTRAL	NA	3	"KCNMB2,PIK3CA,ZMAT3"
TCGA.CK.5914.01A	3	178742777	178927972	12	-0.3697	NEUTRAL	NA	2	"PIK3CA,ZMAT3"
TCGA.AA.3982	3	178748479	179485663	156	0.1687	NEUTRAL	NA	10	"ACTL6A,GNB4,KCNMB3,MFN1,MRPL47,NDUFB5,PIK3CA,USP13,ZMAT3,ZNF639"
TCGA.AA.3850	3	178748479	179594589	181	0.32055	NEUTRAL	NA	11	"ACTL6A,GNB4,KCNMB3,MFN1,MRPL47,NDUFB5,PEX5L,PIK3CA,USP13,ZMAT3,ZNF639"
TCGA.AA.3941	3	178748479	179603968	184	0.3477	NEUTRAL	NA	11	"ACTL6A,GNB4,KCNMB3,MFN1,MRPL47,NDUFB5,PEX5L,PIK3CA,USP13,ZMAT3,ZNF639"
TCGA.AG.3909.01A	3	178916607	178968514	22	0.1921	NEUTRAL	NA	2	"KCNMB3,PIK3CA"
TCGA.AA.3930.01A	3	178927972	189838011	824	0.0673	NEUTRAL	NA	80	"ABCC5,ABCF3,ACTL6A,ADIPOQ,AHSG,ALG3,AP2M1,ATP11B,B3GNT5,BCL6,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,CRYGS,DCUN1D1,DGKG,DNAJB11,DNAJC19,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,FXR1,GNB4,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KCNMB3,KLHL24,KLHL6,KNG1,LAMP3,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,MCCC1,MCF2L2,MFN1,MRPL47,NDUFB5,P3H2,PARL,PEX5L,PIK3CA,POLR2H,PSMD2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SOX2,SST,ST6GAL1,TBCCD1,THPO,TMEM41A,TP63,TPRG1,TRA2B,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZNF639"
TCGA.AA.A00N.01A	3	178937347	178943688	6	0.1511	NEUTRAL	NA	1	PIK3CA
TCGA.AZ.4684.01A	3	178960675	179527227	84	-0.0977	NEUTRAL	NA	9	"ACTL6A,GNB4,KCNMB3,MFN1,MRPL47,NDUFB5,PEX5L,USP13,ZNF639"
TCGA.AA.3509.01A	3	178962266	180679243	131	-0.0934	NEUTRAL	NA	12	"ACTL6A,CCDC39,FXR1,GNB4,KCNMB3,MFN1,MRPL47,NDUFB5,PEX5L,TTC14,USP13,ZNF639"
TCGA.AG.3891.01A	3	179046024	179096112	16	0.0835	NEUTRAL	NA	2	"MFN1,ZNF639"
TCGA.AA.A00L.01A	3	179046024	185169076	420	-0.4488	NEUTRAL	NA	49	"ABCC5,ABCF3,ACTL6A,ALG3,AP2M1,ATP11B,B3GNT5,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,DCUN1D1,DNAJC19,DVL3,ECE2,EHHADH,EIF2B5,EIF4G1,EPHB3,FAM131A,FXR1,GNB4,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAGEF1,MAP3K13,MAP6D1,MCCC1,MCF2L2,MFN1,MRPL47,NDUFB5,PARL,PEX5L,POLR2H,PSMD2,SOX2,THPO,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZNF639"
TCGA.AG.4009.01A	3	179050750	183861836	328	-0.0111	NEUTRAL	NA	29	"ABCC5,ACTL6A,ATP11B,B3GNT5,CCDC39,DCUN1D1,DNAJC19,EIF2B5,FXR1,GNB4,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAP6D1,MCCC1,MCF2L2,MFN1,MRPL47,NDUFB5,PARL,PEX5L,SOX2,TTC14,USP13,YEATS2,ZNF639"
TCGA.AA.A010.01A	3	179066589	182664988	164	0.1704	NEUTRAL	NA	14	"ACTL6A,ATP11B,CCDC39,DCUN1D1,DNAJC19,FXR1,GNB4,MFN1,MRPL47,NDUFB5,PEX5L,SOX2,TTC14,USP13"
TCGA.AG.3909.01A	3	179076581	179085180	5	-0.2277	NEUTRAL	NA	1	MFN1
TCGA.AA.A00N.01A	3	179080119	179085769	5	-0.3023	NEUTRAL	NA	1	MFN1
TCGA.CK.5914.01A	3	179080119	179407958	50	0.0187	NEUTRAL	NA	6	"ACTL6A,GNB4,MFN1,MRPL47,NDUFB5,USP13"
TCGA.AG.3909.01A	3	179085769	179143859	18	0.1926	NEUTRAL	NA	2	"GNB4,MFN1"
TCGA.AG.3891.01A	3	179096381	179294360	18	-0.1859	NEUTRAL	NA	3	"ACTL6A,GNB4,MFN1"
TCGA.A6.3808.01A	3	179132646	183952023	350	-0.0031	NEUTRAL	NA	31	"ABCC5,ABCF3,ACTL6A,AP2M1,ATP11B,B3GNT5,CCDC39,DCUN1D1,DNAJC19,DVL3,EIF2B5,FXR1,GNB4,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAP6D1,MCCC1,MCF2L2,MRPL47,NDUFB5,PARL,PEX5L,SOX2,TTC14,USP13,VWA5B2,YEATS2"
TCGA.AA.A00N.01A	3	179134214	179280803	5	-0.0877	NEUTRAL	NA	2	"ACTL6A,GNB4"
TCGA.AG.3909.01A	3	179298362	179426553	24	0.2782	NEUTRAL	NA	4	"ACTL6A,MRPL47,NDUFB5,USP13"
TCGA.AG.3891.01A	3	179298362	179474756	34	0.065	NEUTRAL	NA	4	"ACTL6A,MRPL47,NDUFB5,USP13"
TCGA.AA.A00N.01A	3	179298912	179426553	23	0.2231	NEUTRAL	NA	4	"ACTL6A,MRPL47,NDUFB5,USP13"
TCGA.AG.3906.01A	3	179332707	179472483	19	0.2985	NEUTRAL	NA	2	"NDUFB5,USP13"
TCGA.AG.3906.01A	3	179474756	182664988	99	-0.1163	NEUTRAL	NA	9	"ATP11B,CCDC39,DCUN1D1,DNAJC19,FXR1,PEX5L,SOX2,TTC14,USP13"
TCGA.AG.3891.01A	3	179478850	182664988	99	-0.1733	NEUTRAL	NA	9	"ATP11B,CCDC39,DCUN1D1,DNAJC19,FXR1,PEX5L,SOX2,TTC14,USP13"
TCGA.AA.3982	3	179498964	182657665	662	-0.1846	NEUTRAL	NA	9	"ATP11B,CCDC39,DCUN1D1,DNAJC19,FXR1,PEX5L,SOX2,TTC14,USP13"
TCGA.AG.3909.01A	3	179519565	179689320	14	0.3061	NEUTRAL	NA	1	PEX5L
TCGA.CK.5914.01A	3	179533597	180320000	11	0.1532	NEUTRAL	NA	2	"PEX5L,TTC14"
TCGA.AA.A02H.01A	3	179597686	183962348	279	-0.0216	NEUTRAL	NA	27	"ABCC5,ABCF3,ALG3,AP2M1,ATP11B,B3GNT5,CCDC39,DCUN1D1,DNAJC19,DVL3,EIF2B5,FXR1,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAP6D1,MCCC1,MCF2L2,PARL,PEX5L,SOX2,TTC14,VWA5B2,YEATS2"
TCGA.AA.3850	3	180242357	181287057	154	-0.28565	NEUTRAL	NA	4	"CCDC39,DNAJC19,FXR1,TTC14"
TCGA.CK.5914.01A	3	180332662	183646496	187	-0.0141	NEUTRAL	NA	17	"ABCC5,ATP11B,B3GNT5,CCDC39,DCUN1D1,DNAJC19,FXR1,KLHL24,KLHL6,LAMP3,MAP6D1,MCCC1,MCF2L2,PARL,SOX2,TTC14,YEATS2"
TCGA.AG.3909.01A	3	180359731	182759318	76	0.2522	NEUTRAL	NA	7	"ATP11B,CCDC39,DCUN1D1,DNAJC19,FXR1,MCCC1,SOX2"
TCGA.AA.3556	3	181372171	197833757	4911	0.0342	NEUTRAL	NA	123	Too-Many
TCGA.AA.3850	3	181650099	182015197	60	-0.11285	NEUTRAL	NA	0	None
TCGA.AA.3941	3	181732910	182379525	139	-0.1451	NEUTRAL	NA	0	None
TCGA.AG.3598	3	181801135	184474304	692	0.0667	NEUTRAL	NA	32	"ABCC5,ABCF3,ALG3,AP2M1,ATP11B,B3GNT5,CAMK2N2,CHRD,CLCN2,DCUN1D1,DVL3,ECE2,EIF2B5,EIF4G1,EPHB3,FAM131A,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAGEF1,MAP6D1,MCCC1,MCF2L2,PARL,POLR2H,PSMD2,THPO,VWA5B2,YEATS2"
TCGA.AA.3850	3	182041908	182056893	11	0.24525	NEUTRAL	NA	0	None
TCGA.AA.3850	3	182082682	182261808	37	-0.05025	NEUTRAL	NA	0	None
TCGA.AA.3850	3	182308910	182350417	14	-0.20795	NEUTRAL	NA	0	None
TCGA.AA.3850	3	182353024	187111523	1417	0.29405	NEUTRAL	NA	58	"ABCC5,ABCF3,ADIPOQ,AHSG,ALG3,AP2M1,ATP11B,B3GNT5,C3orf70,CAMK2N2,CHRD,CLCN2,CRYGS,DCUN1D1,DGKG,DNAJB11,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KLHL24,KLHL6,KNG1,LAMP3,LIPH,MAGEF1,MAP3K13,MAP6D1,MASP1,MCCC1,MCF2L2,PARL,POLR2H,PSMD2,RFC4,RPL39L,RTP1,RTP4,SENP2,ST6GAL1,TBCCD1,THPO,TMEM41A,TRA2B,VPS8,VWA5B2,YEATS2"
TCGA.CI.6623	3	182428327	193482596	3688	-0.3996	NEUTRAL	NA	80	"ABCC5,ABCF3,ADIPOQ,AHSG,ALG3,AP2M1,ATP11B,ATP13A4,ATP13A5,B3GNT5,BCL6,C3orf70,CAMK2N2,CCDC50,CHRD,CLCN2,CLDN1,CLDN16,CRYGS,DCUN1D1,DGKG,DNAJB11,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,FGF12,GMNC,HRASLS,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,IL1RAP,KLHL24,KLHL6,KNG1,LAMP3,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,MB21D2,MCCC1,MCF2L2,OPA1,OSTN,P3H2,PARL,POLR2H,PSMD2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,THPO,TMEM207,TMEM41A,TP63,TPRG1,TRA2B,UTS2B,VPS8,VWA5B2,YEATS2"
TCGA.AA.3941	3	182604825	182657980	14	-0.4346	NEUTRAL	NA	2	"ATP11B,DCUN1D1"
TCGA.AA.3982	3	182657980	184649025	539	0.2834	NEUTRAL	NA	32	"ABCC5,ABCF3,ALG3,AP2M1,B3GNT5,CAMK2N2,CHRD,CLCN2,DCUN1D1,DVL3,ECE2,EIF2B5,EIF4G1,EPHB3,FAM131A,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAGEF1,MAP6D1,MCCC1,MCF2L2,PARL,POLR2H,PSMD2,THPO,VPS8,VWA5B2,YEATS2"
TCGA.AA.3811	3	182657980	188022310	1732	-0.0205	NEUTRAL	NA	61	"ABCC5,ABCF3,ADIPOQ,AHSG,ALG3,AP2M1,B3GNT5,BCL6,C3orf70,CAMK2N2,CHRD,CLCN2,CRYGS,DCUN1D1,DGKG,DNAJB11,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KLHL24,KLHL6,KNG1,LAMP3,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,MCCC1,MCF2L2,PARL,POLR2H,PSMD2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,THPO,TMEM41A,TRA2B,VPS8,VWA5B2,YEATS2"
TCGA.AA.3509.01A	3	182662822	184552422	336	-0.1616	NEUTRAL	NA	32	"ABCC5,ABCF3,ALG3,AP2M1,B3GNT5,CAMK2N2,CHRD,CLCN2,DCUN1D1,DVL3,ECE2,EIF2B5,EIF4G1,EPHB3,FAM131A,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAGEF1,MAP6D1,MCCC1,MCF2L2,PARL,POLR2H,PSMD2,THPO,VPS8,VWA5B2,YEATS2"
TCGA.AA.A00N.01A	3	182664988	182763160	15	-0.0105	NEUTRAL	NA	2	"DCUN1D1,MCCC1"
TCGA.AZ.4684.01A	3	182664988	188583941	607	-0.0675	NEUTRAL	NA	61	"ABCC5,ABCF3,ADIPOQ,AHSG,ALG3,AP2M1,B3GNT5,BCL6,C3orf70,CAMK2N2,CHRD,CLCN2,CRYGS,DCUN1D1,DGKG,DNAJB11,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KLHL24,KLHL6,KNG1,LAMP3,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,MCCC1,MCF2L2,PARL,POLR2H,PSMD2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,THPO,TMEM41A,TRA2B,VPS8,VWA5B2,YEATS2"
TCGA.AG.3906.01A	3	182665299	183524602	95	0.1167	NEUTRAL	NA	8	"B3GNT5,DCUN1D1,KLHL24,KLHL6,LAMP3,MCCC1,MCF2L2,YEATS2"
TCGA.AG.3891.01A	3	182665299	184020129	225	0.1599	NEUTRAL	NA	23	"ABCC5,ABCF3,ALG3,AP2M1,B3GNT5,CAMK2N2,DCUN1D1,DVL3,ECE2,EIF2B5,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAP6D1,MCCC1,MCF2L2,PARL,PSMD2,VWA5B2,YEATS2"
TCGA.AA.A010.01A	3	182698176	182910770	27	0.04	NEUTRAL	NA	4	"DCUN1D1,LAMP3,MCCC1,MCF2L2"
TCGA.AG.A00Y.01A	3	182743471	186038118	448	0.3703	NEUTRAL	NA	41	"ABCC5,ABCF3,ALG3,AP2M1,B3GNT5,C3orf70,CAMK2N2,CHRD,CLCN2,DGKG,DVL3,ECE2,EHHADH,EIF2B5,EIF4G1,EPHB3,ETV5,FAM131A,HTR3C,HTR3D,HTR3E,IGF2BP2,KLHL24,KLHL6,LAMP3,LIPH,MAGEF1,MAP3K13,MAP6D1,MCCC1,MCF2L2,PARL,POLR2H,PSMD2,SENP2,THPO,TMEM41A,TRA2B,VPS8,VWA5B2,YEATS2"
TCGA.AG.3909.01A	3	182763160	182912926	17	-0.4601	NEUTRAL	NA	3	"LAMP3,MCCC1,MCF2L2"
TCGA.AG.A00C.01A	3	182769926	182994616	27	0.2576	NEUTRAL	NA	4	"B3GNT5,LAMP3,MCCC1,MCF2L2"
TCGA.AA.A00F.01A	3	182817133	183823575	86	-0.002	NEUTRAL	NA	13	"ABCC5,B3GNT5,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAP6D1,MCCC1,MCF2L2,PARL,YEATS2"
TCGA.AA.A00N.01A	3	182923606	183516637	62	0.3392	NEUTRAL	NA	5	"B3GNT5,KLHL24,KLHL6,MCF2L2,YEATS2"
TCGA.AA.A010.01A	3	183006861	183107434	13	0.149	NEUTRAL	NA	1	MCF2L2
TCGA.AG.A00C.01A	3	183006861	183667504	76	-0.0349	NEUTRAL	NA	7	"ABCC5,KLHL24,KLHL6,MAP6D1,MCF2L2,PARL,YEATS2"
TCGA.SS.A7HO	3	183205936	197833757	4462	0.0463	NEUTRAL	NA	116	Too-Many
TCGA.D5.5540	3	183278041	190457297	2519	0.0434	NEUTRAL	NA	62	"ABCC5,ABCF3,ADIPOQ,AHSG,ALG3,AP2M1,BCL6,C3orf70,CAMK2N2,CHRD,CLCN2,CLDN1,CLDN16,CRYGS,DGKG,DNAJB11,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,IL1RAP,KLHL24,KNG1,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,P3H2,PARL,POLR2H,PSMD2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,THPO,TMEM207,TMEM41A,TP63,TPRG1,TRA2B,VPS8,VWA5B2,YEATS2"
TCGA.EI.6514	3	183393845	183920166	120	-0.1138	NEUTRAL	NA	12	"ABCC5,ABCF3,AP2M1,DVL3,EIF2B5,HTR3C,HTR3D,HTR3E,KLHL24,MAP6D1,PARL,YEATS2"
TCGA.AA.A010.01A	3	183495303	183515673	4	-0.269	NEUTRAL	NA	1	YEATS2
TCGA.AA.A02E.01A	3	183495303	188202371	470	-0.1802	NEUTRAL	NA	54	"ABCC5,ABCF3,ADIPOQ,AHSG,ALG3,AP2M1,BCL6,C3orf70,CAMK2N2,CHRD,CLCN2,CRYGS,DGKG,DNAJB11,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KNG1,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,PARL,POLR2H,PSMD2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,THPO,TMEM41A,TRA2B,VPS8,VWA5B2,YEATS2"
TCGA.AG.A016.01A	3	183520985	183679269	28	0.0958	NEUTRAL	NA	4	"ABCC5,MAP6D1,PARL,YEATS2"
TCGA.AG.3906.01A	3	183560034	183860008	59	0.1174	NEUTRAL	NA	6	"ABCC5,EIF2B5,HTR3C,HTR3D,HTR3E,PARL"
TCGA.AA.A010.01A	3	183580499	183585621	3	-0.1644	NEUTRAL	NA	1	PARL
TCGA.AA.A01I.01A	3	183660498	197765401	972	-0.2197	NEUTRAL	NA	111	Too-Many
TCGA.AG.A00C.01A	3	183669191	183823575	39	0.3113	NEUTRAL	NA	4	"ABCC5,HTR3C,HTR3D,HTR3E"
TCGA.AG.A016.01A	3	183681155	183860558	41	-0.1644	NEUTRAL	NA	5	"ABCC5,EIF2B5,HTR3C,HTR3D,HTR3E"
TCGA.CK.5914.01A	3	183732020	183777920	17	0.1831	NEUTRAL	NA	3	"ABCC5,HTR3C,HTR3D"
TCGA.AG.A014.01A	3	183823575	184557439	147	0.2962	NEUTRAL	NA	19	"ABCF3,ALG3,AP2M1,CAMK2N2,CHRD,CLCN2,DVL3,ECE2,EIF2B5,EIF4G1,EPHB3,FAM131A,HTR3E,MAGEF1,POLR2H,PSMD2,THPO,VPS8,VWA5B2"
TCGA.AA.A00F.01A	3	183853127	184093655	112	0.2902	NEUTRAL	NA	14	"ABCF3,ALG3,AP2M1,CAMK2N2,CLCN2,DVL3,ECE2,EIF2B5,EIF4G1,FAM131A,POLR2H,PSMD2,THPO,VWA5B2"
TCGA.AA.A01Q.01A	3	183854373	184017003	55	-0.0058	NEUTRAL	NA	9	"ABCF3,ALG3,AP2M1,CAMK2N2,DVL3,ECE2,EIF2B5,PSMD2,VWA5B2"
TCGA.AG.A016.01A	3	183860826	183904263	25	0.1717	NEUTRAL	NA	4	"ABCF3,AP2M1,DVL3,EIF2B5"
TCGA.AA.A00J.01A	3	183861193	197765401	841	0.157	NEUTRAL	NA	107	Too-Many
TCGA.AF.3914.01A	3	183862338	184298139	140	-0.5062	NEUTRAL	NA	16	"ABCF3,ALG3,AP2M1,CAMK2N2,CHRD,CLCN2,DVL3,ECE2,EIF2B5,EIF4G1,EPHB3,FAM131A,POLR2H,PSMD2,THPO,VWA5B2"
TCGA.AG.A00C.01A	3	183873397	184298139	131	0.3575	NEUTRAL	NA	15	"ABCF3,ALG3,AP2M1,CAMK2N2,CHRD,CLCN2,DVL3,ECE2,EIF4G1,EPHB3,FAM131A,POLR2H,PSMD2,THPO,VWA5B2"
TCGA.AA.A00K.01A	3	183882555	185236878	153	0.0097	NEUTRAL	NA	22	"ABCF3,ALG3,AP2M1,C3orf70,CAMK2N2,CHRD,CLCN2,DVL3,ECE2,EHHADH,EIF4G1,EPHB3,FAM131A,LIPH,MAGEF1,MAP3K13,POLR2H,PSMD2,THPO,TMEM41A,VPS8,VWA5B2"
TCGA.AG.4009.01A	3	183888110	183961320	21	-0.1446	NEUTRAL	NA	5	"ABCF3,ALG3,AP2M1,DVL3,VWA5B2"
TCGA.AG.3906.01A	3	183894722	183967463	24	0.3764	NEUTRAL	NA	5	"ABCF3,ALG3,AP2M1,ECE2,VWA5B2"
TCGA.AG.A01L.01A	3	183898354	184040133	57	0.1151	NEUTRAL	NA	8	"ABCF3,ALG3,AP2M1,CAMK2N2,ECE2,EIF4G1,PSMD2,VWA5B2"
TCGA.AG.A016.01A	3	183905121	184001524	24	-0.3521	NEUTRAL	NA	5	"ABCF3,ALG3,CAMK2N2,ECE2,VWA5B2"
TCGA.EI.6514	3	183930637	197833757	4275	0.2716	NEUTRAL	NA	103	Too-Many
TCGA.AA.A02H.01A	3	183962988	184298139	95	-0.4386	NEUTRAL	NA	11	"ALG3,CAMK2N2,CHRD,CLCN2,ECE2,EIF4G1,EPHB3,FAM131A,POLR2H,PSMD2,THPO"
TCGA.AA.A02F.01A	3	184001524	197765401	840	0.0251	NEUTRAL	NA	100	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,C3orf70,CCDC50,CEP19,CHRD,CLCN2,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,ECE2,EHHADH,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,IQCG,KIAA0226,KNG1,LIPH,LMLN,LPP,LRCH3,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,POLR2H,PPP1R2,PSMD2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP2,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,THPO,TM4SF19,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,VPS8,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.A016.01A	3	184002713	184020129	12	0.2263	NEUTRAL	NA	2	"ECE2,PSMD2"
TCGA.AG.A016.01A	3	184020732	184052484	31	-0.2963	NEUTRAL	NA	2	"EIF4G1,PSMD2"
TCGA.AA.A01Q.01A	3	184026236	184041144	11	-0.0548	NEUTRAL	NA	2	"EIF4G1,PSMD2"
TCGA.AG.A01L.01A	3	184041144	184049017	12	-0.2824	NEUTRAL	NA	1	EIF4G1
TCGA.AG.3906.01A	3	184049017	184076716	17	0.1744	NEUTRAL	NA	3	"CLCN2,EIF4G1,FAM131A"
TCGA.AG.3891.01A	3	184049017	184081220	21	0.0652	NEUTRAL	NA	4	"CLCN2,EIF4G1,FAM131A,POLR2H"
TCGA.AG.A01L.01A	3	184052484	195456473	586	0.1826	NEUTRAL	NA	69	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,C3orf70,CCDC50,CHRD,CLCN2,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DNAJB11,EHHADH,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FAM43A,FETUB,FGF12,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,KNG1,LIPH,LPP,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MUC20,OPA1,OSTN,P3H2,POLR2H,PPP1R2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,THPO,TMEM207,TMEM41A,TMEM44,TP63,TPRG1,TRA2B,UTS2B,VPS8,XXYLT1"
TCGA.AG.A016.01A	3	184059621	184102794	29	0.2662	NEUTRAL	NA	5	"CHRD,CLCN2,FAM131A,POLR2H,THPO"
TCGA.AG.A015.01A	3	184072318	195590958	599	-0.1533	NEUTRAL	NA	69	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,C3orf70,CCDC50,CHRD,CLCN2,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DNAJB11,EHHADH,EIF4A2,EPHB3,ETV5,FAM43A,FETUB,FGF12,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,KNG1,LIPH,LPP,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MUC20,MUC4,OPA1,OSTN,P3H2,POLR2H,PPP1R2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,THPO,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UTS2B,VPS8,XXYLT1"
TCGA.A6.3810.01A	3	184082706	184093945	8	-0.1988	NEUTRAL	NA	2	"POLR2H,THPO"
TCGA.A6.3808.01A	3	184084460	184542374	33	-0.4851	NEUTRAL	NA	6	"CHRD,EPHB3,MAGEF1,POLR2H,THPO,VPS8"
TCGA.AA.A00O.01A	3	184090269	197765401	813	-0.0977	NEUTRAL	NA	94	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,C3orf70,CCDC50,CEP19,CHRD,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EHHADH,EIF4A2,EPHB3,ETV5,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,IQCG,KIAA0226,KNG1,LIPH,LMLN,LPP,LRCH3,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP2,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,THPO,TM4SF19,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,VPS8,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A01Q.01A	3	184093945	184102794	9	-0.2586	NEUTRAL	NA	2	"CHRD,THPO"
TCGA.AA.A00F.01A	3	184093945	186262004	140	-0.0081	NEUTRAL	NA	16	"C3orf70,CHRD,CRYGS,DGKG,EHHADH,EPHB3,ETV5,IGF2BP2,LIPH,MAGEF1,MAP3K13,SENP2,THPO,TMEM41A,TRA2B,VPS8"
TCGA.A6.3810.01A	3	184098431	185644362	149	0.234	NEUTRAL	NA	12	"C3orf70,CHRD,EHHADH,EPHB3,IGF2BP2,LIPH,MAGEF1,MAP3K13,SENP2,TMEM41A,TRA2B,VPS8"
TCGA.AG.3909.01A	3	184099546	186268897	181	0.2073	NEUTRAL	NA	16	"C3orf70,CHRD,CRYGS,DGKG,EHHADH,EPHB3,ETV5,IGF2BP2,LIPH,MAGEF1,MAP3K13,SENP2,TBCCD1,TMEM41A,TRA2B,VPS8"
TCGA.AA.A01Q.01A	3	184103787	184107095	7	0.2041	NEUTRAL	NA	1	CHRD
TCGA.AG.A016.01A	3	184103787	195481043	565	-0.0542	NEUTRAL	NA	65	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,C3orf70,CCDC50,CHRD,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DNAJB11,EHHADH,EIF4A2,EPHB3,ETV5,FAM43A,FETUB,FGF12,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,KNG1,LIPH,LPP,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MUC20,MUC4,OPA1,OSTN,P3H2,PPP1R2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,TMEM207,TMEM41A,TMEM44,TP63,TPRG1,TRA2B,UTS2B,VPS8,XXYLT1"
TCGA.AG.3891.01A	3	184106684	184297217	10	0.3155	NEUTRAL	NA	2	"CHRD,EPHB3"
TCGA.AA.A01K.01A	3	184290253	197765401	789	0.0475	NEUTRAL	NA	92	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,C3orf70,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EHHADH,EIF4A2,EPHB3,ETV5,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,IQCG,KIAA0226,KNG1,LIPH,LMLN,LPP,LRCH3,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP2,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,VPS8,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.3906.01A	3	184298139	185212403	69	-0.0728	NEUTRAL	NA	7	"C3orf70,EHHADH,EPHB3,MAGEF1,MAP3K13,TMEM41A,VPS8"
TCGA.AG.3891.01A	3	184298139	197765401	811	-0.0445	NEUTRAL	NA	92	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,C3orf70,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EHHADH,EIF4A2,EPHB3,ETV5,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,IQCG,KIAA0226,KNG1,LIPH,LMLN,LPP,LRCH3,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP2,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,VPS8,WDR53,XXYLT1,ZDHHC19"
TCGA.CM.6172	3	184355122	197833757	4172	-0.0011	NEUTRAL	NA	91	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,C3orf70,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EHHADH,EIF4A2,ETV5,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,IQCG,KIAA0226,KNG1,LIPH,LMLN,LPP,LRCH3,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP2,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,VPS8,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A010.01A	3	184428634	184953028	54	0.1652	NEUTRAL	NA	4	"C3orf70,EHHADH,MAGEF1,VPS8"
TCGA.AG.A00C.01A	3	184428634	186262004	158	-0.0779	NEUTRAL	NA	13	"C3orf70,CRYGS,DGKG,EHHADH,ETV5,IGF2BP2,LIPH,MAGEF1,MAP3K13,SENP2,TMEM41A,TRA2B,VPS8"
TCGA.AG.4009.01A	3	184428634	186459334	200	0.1289	NEUTRAL	NA	19	"AHSG,C3orf70,CRYGS,DGKG,DNAJB11,EHHADH,ETV5,FETUB,HRG,IGF2BP2,KNG1,LIPH,MAGEF1,MAP3K13,SENP2,TBCCD1,TMEM41A,TRA2B,VPS8"
TCGA.AF.3914.01A	3	184428634	195474008	553	0.0205	NEUTRAL	NA	63	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,C3orf70,CCDC50,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DNAJB11,EHHADH,EIF4A2,ETV5,FAM43A,FETUB,FGF12,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,KNG1,LIPH,LPP,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MUC20,MUC4,OPA1,OSTN,P3H2,PPP1R2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,TMEM207,TMEM41A,TMEM44,TP63,TPRG1,TRA2B,UTS2B,VPS8,XXYLT1"
TCGA.AA.A02H.01A	3	184428634	197581188	750	0.0124	NEUTRAL	NA	88	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,C3orf70,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EHHADH,EIF4A2,ETV5,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,KIAA0226,KNG1,LIPH,LPP,LRCH3,LRRC15,LSG1,MAGEF1,MAP3K13,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL39L,RTP1,RTP2,RTP4,SENP2,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,VPS8,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.3598	3	184476593	197833757	4128	0.0329	NEUTRAL	NA	90	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,C3orf70,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EHHADH,EIF4A2,ETV5,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,IQCG,KIAA0226,KNG1,LIPH,LMLN,LPP,LRCH3,LRRC15,LSG1,MAP3K13,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP2,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,VPS8,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.3872	3	184532027	186252770	457	-0.2662	NEUTRAL	NA	11	"C3orf70,DGKG,EHHADH,ETV5,IGF2BP2,LIPH,MAP3K13,SENP2,TMEM41A,TRA2B,VPS8"
TCGA.AA.3941	3	184533096	184646907	20	-0.0034	NEUTRAL	NA	1	VPS8
TCGA.AA.A00N.01A	3	184542374	186257157	160	0.3535	NEUTRAL	NA	12	"C3orf70,CRYGS,DGKG,EHHADH,ETV5,IGF2BP2,LIPH,MAP3K13,SENP2,TMEM41A,TRA2B,VPS8"
TCGA.CK.5914.01A	3	184543934	184700765	38	0.2048	NEUTRAL	NA	1	VPS8
TCGA.A6.3808.01A	3	184543934	193386107	457	0.2896	NEUTRAL	NA	48	"ADIPOQ,AHSG,ATP13A4,ATP13A5,BCL6,C3orf70,CCDC50,CLDN1,CLDN16,CRYGS,DGKG,DNAJB11,EHHADH,EIF4A2,ETV5,FETUB,FGF12,GMNC,HRASLS,HRG,IGF2BP2,IL1RAP,KNG1,LIPH,LPP,MAP3K13,MASP1,MB21D2,OPA1,OSTN,P3H2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,TMEM207,TMEM41A,TP63,TPRG1,TRA2B,UTS2B,VPS8"
TCGA.AG.A014.01A	3	184566819	186386685	181	-0.1911	NEUTRAL	NA	17	"AHSG,C3orf70,CRYGS,DGKG,DNAJB11,EHHADH,ETV5,FETUB,HRG,IGF2BP2,LIPH,MAP3K13,SENP2,TBCCD1,TMEM41A,TRA2B,VPS8"
TCGA.AA.3509.01A	3	184632708	186502154	187	-0.1212	NEUTRAL	NA	19	"AHSG,C3orf70,CRYGS,DGKG,DNAJB11,EHHADH,EIF4A2,ETV5,FETUB,HRG,IGF2BP2,KNG1,LIPH,MAP3K13,SENP2,TBCCD1,TMEM41A,TRA2B,VPS8"
TCGA.AA.3941	3	184698565	187118109	776	0.3407	NEUTRAL	NA	26	"ADIPOQ,AHSG,C3orf70,CRYGS,DGKG,DNAJB11,EHHADH,EIF4A2,ETV5,FETUB,HRG,IGF2BP2,KNG1,LIPH,MAP3K13,MASP1,RFC4,RPL39L,RTP1,RTP4,SENP2,ST6GAL1,TBCCD1,TMEM41A,TRA2B,VPS8"
TCGA.AA.3982	3	184698565	188001874	1179	0.1498	NEUTRAL	NA	30	"ADIPOQ,AHSG,BCL6,C3orf70,CRYGS,DGKG,DNAJB11,EHHADH,EIF4A2,ETV5,FETUB,HRG,IGF2BP2,KNG1,LIPH,LPP,MAP3K13,MASP1,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,TMEM41A,TRA2B,VPS8"
TCGA.CK.5914.01A	3	184766209	185198010	24	0.2589	NEUTRAL	NA	4	"C3orf70,EHHADH,MAP3K13,VPS8"
TCGA.AA.A00L.01A	3	185181296	185341731	37	-0.0868	NEUTRAL	NA	4	"LIPH,MAP3K13,SENP2,TMEM41A"
TCGA.CK.5914.01A	3	185200096	185364764	35	-0.342	NEUTRAL	NA	5	"IGF2BP2,LIPH,MAP3K13,SENP2,TMEM41A"
TCGA.AA.A00K.01A	3	185241802	186518845	146	-0.3127	NEUTRAL	NA	15	"AHSG,CRYGS,DGKG,DNAJB11,EIF4A2,ETV5,FETUB,HRG,IGF2BP2,KNG1,LIPH,RFC4,SENP2,TBCCD1,TRA2B"
TCGA.AG.3906.01A	3	185245234	186442850	121	-0.0288	NEUTRAL	NA	13	"AHSG,CRYGS,DGKG,DNAJB11,ETV5,FETUB,HRG,IGF2BP2,KNG1,LIPH,SENP2,TBCCD1,TRA2B"
TCGA.AA.A00L.01A	3	185344067	194118087	366	-0.4837	NEUTRAL	NA	46	"ADIPOQ,AHSG,ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DNAJB11,EIF4A2,ETV5,FETUB,FGF12,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,KNG1,LPP,LRRC15,MASP1,MB21D2,OPA1,OSTN,P3H2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SST,ST6GAL1,TBCCD1,TMEM207,TP63,TPRG1,TRA2B,UTS2B"
TCGA.CK.5914.01A	3	185367140	185882650	35	0.3177	NEUTRAL	NA	4	"DGKG,ETV5,IGF2BP2,TRA2B"
TCGA.AG.3611.01A	3	185540895	197765401	636	0.1508	NEUTRAL	NA	83	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EIF4A2,ETV5,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,IQCG,KIAA0226,KNG1,LMLN,LPP,LRCH3,LRRC15,LSG1,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.A01W.01A	3	185552469	185778837	40	-0.3339	NEUTRAL	NA	2	"ETV5,TRA2B"
TCGA.AG.A01W.01A	3	185779912	186067317	18	0.1882	NEUTRAL	NA	2	"DGKG,ETV5"
TCGA.A6.3810.01A	3	185798793	197896676	732	0.3069	NEUTRAL	NA	82	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EIF4A2,ETV5,FAM157A,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IL1RAP,IQCG,KIAA0226,KNG1,LMLN,LPP,LRCH3,LRRC15,LSG1,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.CK.5914.01A	3	185905950	186334188	43	-0.2131	NEUTRAL	NA	5	"AHSG,CRYGS,DGKG,DNAJB11,TBCCD1"
TCGA.AG.A01W.01A	3	186095135	187944152	192	-0.0549	NEUTRAL	NA	19	"ADIPOQ,AHSG,BCL6,CRYGS,DNAJB11,EIF4A2,FETUB,HRG,KNG1,LPP,MASP1,RFC4,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TBCCD1"
TCGA.AA.3680	3	186219210	197833757	3675	-0.0027	NEUTRAL	NA	79	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DLG1,DNAJB11,EIF4A2,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IL1RAP,IQCG,KIAA0226,KNG1,LMLN,LPP,LRCH3,LRRC15,LSG1,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.A00Y.01A	3	186256437	194309210	332	-0.0465	NEUTRAL	NA	43	"ADIPOQ,AHSG,ATP13A3,ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,CPN2,CRYGS,DNAJB11,EIF4A2,FETUB,FGF12,GMNC,GP5,HES1,HRASLS,HRG,IL1RAP,KNG1,LPP,LRRC15,MASP1,MB21D2,OPA1,OSTN,P3H2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TBCCD1,TMEM207,TMEM44,TP63,TPRG1,UTS2B"
TCGA.AA.A00F.01A	3	186268897	186303064	16	0.3015	NEUTRAL	NA	2	"DNAJB11,TBCCD1"
TCGA.AA.3872	3	186273838	197833757	3639	-0.385	NEUTRAL	NA	78	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,DNAJB11,EIF4A2,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IL1RAP,IQCG,KIAA0226,KNG1,LMLN,LPP,LRCH3,LRRC15,LSG1,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.3909.01A	3	186299112	186303064	6	-0.2342	NEUTRAL	NA	1	DNAJB11
TCGA.AG.A00C.01A	3	186330883	186459334	30	-0.2223	NEUTRAL	NA	4	"AHSG,FETUB,HRG,KNG1"
TCGA.AA.A00F.01A	3	186330883	186501313	32	-0.1949	NEUTRAL	NA	4	"AHSG,FETUB,HRG,KNG1"
TCGA.AA.A00D.01A	3	186370021	186501313	19	-0.4911	NEUTRAL	NA	3	"FETUB,HRG,KNG1"
TCGA.AG.A014.01A	3	186387676	186790595	37	0.3111	NEUTRAL	NA	6	"ADIPOQ,EIF4A2,HRG,KNG1,RFC4,ST6GAL1"
TCGA.AA.3966	3	186396731	197833757	3596	-0.1804	NEUTRAL	NA	73	"ACAP2,ADIPOQ,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,EIF4A2,FAM43A,FBXO45,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,IL1RAP,IQCG,KIAA0226,KNG1,LMLN,LPP,LRCH3,LRRC15,LSG1,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.3909.01A	3	186435285	186461438	10	-0.0692	NEUTRAL	NA	1	KNG1
TCGA.AA.A02K.01A	3	186450271	196528807	525	0.1401	NEUTRAL	NA	61	"ACAP2,ADIPOQ,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,CCDC50,CEP19,CLDN1,CLDN16,CPN2,EIF4A2,FAM43A,FBXO45,FGF12,GMNC,GP5,HES1,HRASLS,IL1RAP,KNG1,LPP,LRRC15,LSG1,MASP1,MB21D2,MUC20,MUC4,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PPP1R2,PYDC2,RFC4,RNF168,RPL39L,RTP1,RTP2,RTP4,SLC51A,SMCO1,SST,ST6GAL1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.4009.01A	3	186461438	186571953	20	-0.235	NEUTRAL	NA	4	"ADIPOQ,EIF4A2,KNG1,RFC4"
TCGA.AG.3906.01A	3	186501313	193409828	245	-0.0732	NEUTRAL	NA	30	"ADIPOQ,ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,EIF4A2,FGF12,GMNC,HRASLS,IL1RAP,LPP,MASP1,MB21D2,OPA1,OSTN,P3H2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AA.A01Q.01A	3	186502154	186522354	16	0.1931	NEUTRAL	NA	2	"EIF4A2,RFC4"
TCGA.AA.A00D.01A	3	186502154	186570810	17	-0.0122	NEUTRAL	NA	3	"ADIPOQ,EIF4A2,RFC4"
TCGA.AA.3509.01A	3	186502712	193384034	246	0.3151	NEUTRAL	NA	30	"ADIPOQ,ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,EIF4A2,FGF12,GMNC,HRASLS,IL1RAP,LPP,MASP1,MB21D2,OPA1,OSTN,P3H2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AG.A008.01A	3	186518845	197765401	586	0.1285	NEUTRAL	NA	71	"ACAP2,ADIPOQ,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,FAM43A,FBXO45,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,IL1RAP,IQCG,KIAA0226,LMLN,LPP,LRCH3,LRRC15,LSG1,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.CK.5914.01A	3	186570810	186940879	14	-0.0718	NEUTRAL	NA	5	"ADIPOQ,MASP1,RPL39L,RTP1,ST6GAL1"
TCGA.AG.3909.01A	3	186570810	187009322	29	0.3741	NEUTRAL	NA	5	"ADIPOQ,MASP1,RPL39L,RTP1,ST6GAL1"
TCGA.AA.A00F.01A	3	186570810	187416239	34	-0.1455	NEUTRAL	NA	8	"ADIPOQ,MASP1,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1"
TCGA.AG.A00C.01A	3	186570810	187416239	34	-0.2585	NEUTRAL	NA	8	"ADIPOQ,MASP1,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1"
TCGA.F5.6811.01A	3	186648292	186714875	18	-0.1994	NEUTRAL	NA	1	ST6GAL1
TCGA.F5.6811.01A	3	186717500	199381073	785	0.2019	NEUTRAL	NA	70	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,FAM157A,FAM43A,FBXO45,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,IL1RAP,IQCG,KIAA0226,LMLN,LPP,LRCH3,LRRC15,LSG1,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.4009.01A	3	186760490	192078165	134	0.1019	NEUTRAL	NA	22	"BCL6,CCDC50,CLDN1,CLDN16,FGF12,GMNC,IL1RAP,LPP,MASP1,OSTN,P3H2,PYDC2,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AG.A014.01A	3	186791905	195611645	342	-0.2183	NEUTRAL	NA	42	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,CPN2,FAM43A,FGF12,GMNC,GP5,HES1,HRASLS,IL1RAP,LPP,LRRC15,LSG1,MASP1,MB21D2,MUC20,MUC4,OPA1,OSTN,P3H2,PPP1R2,PYDC2,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TMEM207,TMEM44,TNK2,TP63,TPRG1,UTS2B,XXYLT1"
TCGA.AG.A01N.01A	3	186974425	193120403	151	0.055	NEUTRAL	NA	23	"ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MASP1,MB21D2,OSTN,P3H2,PYDC2,RTP2,RTP4,SST,TMEM207,TP63,TPRG1,UTS2B"
TCGA.CK.5914.01A	3	187086180	187451274	14	-0.4754	NEUTRAL	NA	4	"BCL6,RTP2,RTP4,SST"
TCGA.AA.3941	3	187118320	193265466	2234	-0.1531	NEUTRAL	NA	21	"ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MB21D2,OSTN,P3H2,PYDC2,RTP2,SST,TMEM207,TP63,TPRG1,UTS2B"
TCGA.NH.A50U	3	187128455	197833757	3290	0.0404	NEUTRAL	NA	64	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,FAM43A,FBXO45,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,IL1RAP,IQCG,KIAA0226,LMLN,LPP,LRCH3,LRRC15,LSG1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RNF168,RPL35A,RTP2,SENP5,SLC51A,SMCO1,SST,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.3850	3	187203411	187264515	28	0.19195	NEUTRAL	NA	0	None
TCGA.AA.3850	3	187283847	187320003	29	0.19475	NEUTRAL	NA	0	None
TCGA.AA.3850	3	187384785	188011406	275	0.15285	NEUTRAL	NA	4	"BCL6,LPP,RTP2,SST"
TCGA.AA.A00F.01A	3	187419725	187451274	9	0.251	NEUTRAL	NA	2	"BCL6,RTP2"
TCGA.AG.A00C.01A	3	187419725	187451274	9	0.3681	NEUTRAL	NA	2	"BCL6,RTP2"
TCGA.AZ.4614	3	187959088	188586446	233	-0.0392	NEUTRAL	NA	1	LPP
TCGA.AG.A01W.01A	3	187995120	195643303	269	0.1341	NEUTRAL	NA	34	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,CCDC50,CLDN1,CLDN16,CPN2,FAM43A,FGF12,GMNC,GP5,HES1,HRASLS,IL1RAP,LPP,LRRC15,LSG1,MB21D2,MUC20,MUC4,OPA1,OSTN,P3H2,PPP1R2,PYDC2,TMEM207,TMEM44,TNK2,TP63,TPRG1,UTS2B,XXYLT1"
TCGA.AA.3982	3	188003577	193277512	1830	-0.2426	NEUTRAL	NA	18	"ATP13A4,ATP13A5,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MB21D2,OSTN,P3H2,PYDC2,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AA.3850	3	188022310	190239789	876	-0.27495	NEUTRAL	NA	8	"CLDN1,CLDN16,IL1RAP,LPP,P3H2,TMEM207,TP63,TPRG1"
TCGA.AA.3811	3	188040589	193423897	1864	-0.4204	NEUTRAL	NA	19	"ATP13A4,ATP13A5,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MB21D2,OPA1,OSTN,P3H2,PYDC2,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AG.A00C.01A	3	188123861	190994518	76	-0.3098	NEUTRAL	NA	11	"CLDN1,CLDN16,GMNC,IL1RAP,LPP,OSTN,P3H2,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AA.A00F.01A	3	188123861	193386107	185	-0.1823	NEUTRAL	NA	19	"ATP13A4,ATP13A5,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MB21D2,OPA1,OSTN,P3H2,PYDC2,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AA.A02E.01A	3	188242435	194182796	218	0.3236	NEUTRAL	NA	24	"ATP13A3,ATP13A4,ATP13A5,CCDC50,CLDN1,CLDN16,CPN2,FGF12,GMNC,GP5,HES1,HRASLS,IL1RAP,LPP,LRRC15,MB21D2,OPA1,OSTN,P3H2,PYDC2,TMEM207,TP63,TPRG1,UTS2B"
TCGA.F4.6460	3	188647207	197833757	2664	0.3108	NEUTRAL	NA	60	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,FAM43A,FBXO45,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,IL1RAP,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.3896	3	188846118	188933787	35	-0.0589	NEUTRAL	NA	1	TPRG1
TCGA.CK.5914.01A	3	189675671	190366096	39	0.0658	NEUTRAL	NA	5	"CLDN1,CLDN16,IL1RAP,P3H2,TMEM207"
TCGA.AG.3909.01A	3	189838011	190039766	5	-0.3862	NEUTRAL	NA	2	"CLDN1,P3H2"
TCGA.DM.A1D6	3	189900081	197833757	2144	0.0294	NEUTRAL	NA	57	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,FAM43A,FBXO45,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,IL1RAP,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.3930.01A	3	190026029	192992804	61	-0.2022	NEUTRAL	NA	12	"CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,MB21D2,OSTN,PYDC2,TMEM207,UTS2B"
TCGA.AG.3909.01A	3	190147334	190282014	6	-0.4082	NEUTRAL	NA	2	"IL1RAP,TMEM207"
TCGA.AA.3850	3	190262798	193153193	922	-0.33885	NEUTRAL	NA	11	"ATP13A4,ATP13A5,CCDC50,FGF12,GMNC,HRASLS,IL1RAP,MB21D2,OSTN,PYDC2,UTS2B"
TCGA.AA.A00N.01A	3	190930282	191087661	13	0.3537	NEUTRAL	NA	3	"CCDC50,OSTN,UTS2B"
TCGA.AA.A010.01A	3	191074812	193125056	53	-0.1926	NEUTRAL	NA	7	"ATP13A4,ATP13A5,CCDC50,FGF12,HRASLS,MB21D2,PYDC2"
TCGA.AG.A00C.01A	3	191075789	195610001	229	-0.0649	NEUTRAL	NA	23	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,CCDC50,CPN2,FAM43A,FGF12,GP5,HES1,HRASLS,LRRC15,LSG1,MB21D2,MUC20,MUC4,OPA1,PPP1R2,PYDC2,TMEM44,TNK2,XXYLT1"
TCGA.CM.4752	3	191127167	197833757	1689	-0.1955	NEUTRAL	NA	49	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FGF12,FYTTD1,GP5,HES1,HRASLS,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.CK.5914.01A	3	191861771	192980729	10	-0.0674	NEUTRAL	NA	3	"FGF12,HRASLS,MB21D2"
TCGA.CA.6715	3	192489131	197833757	1242	0.0333	NEUTRAL	NA	47	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,HRASLS,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.4009.01A	3	192635395	193409828	88	0.0744	NEUTRAL	NA	5	"ATP13A4,ATP13A5,HRASLS,MB21D2,OPA1"
TCGA.AA.3930.01A	3	192994492	193355694	68	0.038	NEUTRAL	NA	3	"ATP13A4,ATP13A5,OPA1"
TCGA.AG.A01N.01A	3	193125056	197765401	414	-0.3525	NEUTRAL	NA	44	"ACAP2,APOD,ATP13A3,ATP13A4,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.3909.01A	3	193128735	193165948	11	0.2125	NEUTRAL	NA	1	ATP13A4
TCGA.AA.3844	3	193152911	197833757	1079	0.1361	NEUTRAL	NA	44	"ACAP2,APOD,ATP13A3,ATP13A4,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.CK.5914.01A	3	193171841	193386107	43	0.2388	NEUTRAL	NA	2	"ATP13A4,OPA1"
TCGA.AG.3909.01A	3	193272467	195590958	147	0.0444	NEUTRAL	NA	17	"ACAP2,APOD,ATP13A3,ATP13A4,CPN2,FAM43A,GP5,HES1,LRRC15,LSG1,MUC20,MUC4,OPA1,PPP1R2,TMEM44,TNK2,XXYLT1"
TCGA.AA.3982	3	193284623	196974182	884	0.2891	NEUTRAL	NA	36	"ACAP2,APOD,ATP13A3,CEP19,CPN2,DLG1,FAM43A,FBXO45,GP5,HES1,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A00D.01A	3	193311081	197765401	325	-0.3209	NEUTRAL	NA	43	"ACAP2,APOD,ATP13A3,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.3930.01A	3	193360508	193377254	11	-0.294	NEUTRAL	NA	1	OPA1
TCGA.AA.A00K.01A	3	193377254	197765401	306	-0.2285	NEUTRAL	NA	43	"ACAP2,APOD,ATP13A3,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.3930.01A	3	193380559	197896676	392	0.0544	NEUTRAL	NA	44	"ACAP2,APOD,ATP13A3,BDH1,CEP19,CPN2,DLG1,FAM157A,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.3509.01A	3	193384930	195065930	89	-0.2169	NEUTRAL	NA	11	"ACAP2,ATP13A3,CPN2,FAM43A,GP5,HES1,LRRC15,LSG1,OPA1,TMEM44,XXYLT1"
TCGA.AZ.4684.01A	3	193384930	197896676	402	-0.1512	NEUTRAL	NA	44	"ACAP2,APOD,ATP13A3,BDH1,CEP19,CPN2,DLG1,FAM157A,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.CK.5914.01A	3	193409828	195006459	70	-0.3819	NEUTRAL	NA	11	"ACAP2,ATP13A3,CPN2,FAM43A,GP5,HES1,LRRC15,LSG1,OPA1,TMEM44,XXYLT1"
TCGA.AA.A00F.01A	3	193409828	195017876	42	0.1351	NEUTRAL	NA	11	"ACAP2,ATP13A3,CPN2,FAM43A,GP5,HES1,LRRC15,LSG1,OPA1,TMEM44,XXYLT1"
TCGA.A6.3808.01A	3	193409828	195501013	128	-0.505	NEUTRAL	NA	15	"ACAP2,APOD,ATP13A3,CPN2,FAM43A,GP5,HES1,LRRC15,LSG1,MUC20,MUC4,OPA1,PPP1R2,TMEM44,XXYLT1"
TCGA.AA.3811	3	193424495	197833757	1021	0.0589	NEUTRAL	NA	42	"ACAP2,APOD,ATP13A3,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.CI.6623	3	193487587	197833757	991	0.063	NEUTRAL	NA	42	"ACAP2,APOD,ATP13A3,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A01Q.01A	3	193854158	194390691	33	0.1949	NEUTRAL	NA	7	"ATP13A3,CPN2,GP5,HES1,LRRC15,LSG1,TMEM44"
TCGA.AA.A00N.01A	3	193854158	195622066	154	-0.2502	NEUTRAL	NA	15	"ACAP2,APOD,ATP13A3,CPN2,FAM43A,GP5,HES1,LRRC15,LSG1,MUC20,MUC4,PPP1R2,TMEM44,TNK2,XXYLT1"
TCGA.AG.4009.01A	3	193855461	195459956	94	-0.158	NEUTRAL	NA	13	"ACAP2,APOD,ATP13A3,CPN2,FAM43A,GP5,HES1,LRRC15,LSG1,MUC20,PPP1R2,TMEM44,XXYLT1"
TCGA.AF.A56N	3	194058927	197833757	794	-0.034	NEUTRAL	NA	41	"ACAP2,APOD,ATP13A3,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A010.01A	3	194061776	194176558	28	0.1203	NEUTRAL	NA	4	"ATP13A3,CPN2,GP5,LRRC15"
TCGA.AG.3906.01A	3	194061776	194309210	33	-0.25	NEUTRAL	NA	5	"ATP13A3,CPN2,GP5,LRRC15,TMEM44"
TCGA.A6.5661	3	194112228	197833757	766	-0.1553	NEUTRAL	NA	39	"ACAP2,APOD,ATP13A3,BDH1,CEP19,DLG1,FAM43A,FBXO45,FYTTD1,GP5,IQCG,KIAA0226,LMLN,LRCH3,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A00L.01A	3	194126596	194324974	7	0.3771	NEUTRAL	NA	2	"ATP13A3,TMEM44"
TCGA.AG.A023.01A	3	194151640	197765401	325	-0.1977	NEUTRAL	NA	38	"ACAP2,APOD,ATP13A3,BDH1,CEP19,DLG1,FAM43A,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.D5.5540	3	194194095	197833757	753	0.0308	NEUTRAL	NA	37	"ACAP2,APOD,BDH1,CEP19,DLG1,FAM43A,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.3906.01A	3	194313690	194380781	15	0.3192	NEUTRAL	NA	2	"LSG1,TMEM44"
TCGA.AG.A00Y.01A	3	194313690	197765401	312	0.3128	NEUTRAL	NA	37	"ACAP2,APOD,BDH1,CEP19,DLG1,FAM43A,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A00L.01A	3	194331605	197249474	229	-0.4264	NEUTRAL	NA	31	"ACAP2,APOD,BDH1,CEP19,DLG1,FAM43A,FBXO45,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A02E.01A	3	194371559	195969405	105	0.0307	NEUTRAL	NA	13	"ACAP2,APOD,FAM43A,LSG1,MUC20,MUC4,PCYT1A,PPP1R2,SLC51A,TFRC,TNK2,XXYLT1,ZDHHC19"
TCGA.AG.3906.01A	3	194386232	195474008	46	-0.057	NEUTRAL	NA	8	"ACAP2,APOD,FAM43A,LSG1,MUC20,MUC4,PPP1R2,XXYLT1"
TCGA.AA.A010.01A	3	194386879	195029440	23	-0.4931	NEUTRAL	NA	4	"ACAP2,FAM43A,LSG1,XXYLT1"
TCGA.CK.5914.01A	3	195009802	195477728	40	0.2179	NEUTRAL	NA	5	"ACAP2,APOD,MUC20,MUC4,PPP1R2"
TCGA.AA.A00F.01A	3	195022282	195112757	14	-0.1734	NEUTRAL	NA	1	ACAP2
TCGA.AA.3509.01A	3	195101668	195483966	27	0.2945	NEUTRAL	NA	5	"ACAP2,APOD,MUC20,MUC4,PPP1R2"
TCGA.AA.A00F.01A	3	195163494	195959240	75	0.1981	NEUTRAL	NA	9	"ACAP2,APOD,MUC20,MUC4,PPP1R2,SLC51A,TFRC,TNK2,ZDHHC19"
TCGA.AA.A010.01A	3	195426234	195459956	6	-0.2904	NEUTRAL	NA	1	MUC20
TCGA.A6.6648	3	195479747	196823410	236	-0.3432	NEUTRAL	NA	22	"CEP19,DLG1,FBXO45,MFI2,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.AA.A01F.01A	3	195481043	195493490	12	0.0897	NEUTRAL	NA	1	MUC4
TCGA.AA.A01Q.01A	3	195481043	195493490	12	0.0942	NEUTRAL	NA	1	MUC4
TCGA.AA.3509.01A	3	195485978	195974186	79	-0.2168	NEUTRAL	NA	6	"MUC4,PCYT1A,SLC51A,TFRC,TNK2,ZDHHC19"
TCGA.CK.5914.01A	3	195489695	195498476	9	-0.1229	NEUTRAL	NA	1	MUC4
TCGA.AG.A01L.01A	3	195492113	195590958	8	0.1948	NEUTRAL	NA	2	"MUC4,TNK2"
TCGA.AG.3906.01A	3	195492113	195803855	37	0.0036	NEUTRAL	NA	3	"MUC4,TFRC,TNK2"
TCGA.AA.A01F.01A	3	195495856	195538578	7	-0.3748	NEUTRAL	NA	1	MUC4
TCGA.AG.A016.01A	3	195495856	197765401	245	-0.0362	NEUTRAL	NA	29	"BDH1,CEP19,DLG1,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.AF.3914.01A	3	195501013	197765401	247	-0.0511	NEUTRAL	NA	29	"BDH1,CEP19,DLG1,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.CM.4750.01A	3	195514698	197896676	262	0.1257	NEUTRAL	NA	30	"BDH1,CEP19,DLG1,FAM157A,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.A6.3808.01A	3	195515423	197896676	261	-0.3579	NEUTRAL	NA	30	"BDH1,CEP19,DLG1,FAM157A,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.AA.A01F.01A	3	195590958	195610001	9	0.231	NEUTRAL	NA	1	TNK2
TCGA.CK.5914.01A	3	195590958	195959240	46	-0.4619	NEUTRAL	NA	4	"SLC51A,TFRC,TNK2,ZDHHC19"
TCGA.AG.3909.01A	3	195593708	195622066	11	-0.3746	NEUTRAL	NA	1	TNK2
TCGA.AG.A015.01A	3	195608875	197765401	232	-0.1841	NEUTRAL	NA	28	"BDH1,CEP19,DLG1,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.AA.A01F.01A	3	195611645	196630352	82	-0.3155	NEUTRAL	NA	17	"CEP19,FBXO45,NRROS,PAK2,PCYT1A,PIGX,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.AG.A01L.01A	3	195611645	197765401	226	0.2208	NEUTRAL	NA	28	"BDH1,CEP19,DLG1,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.AG.A014.01A	3	195613784	196753479	120	0.1895	NEUTRAL	NA	20	"CEP19,FBXO45,MFI2,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.AA.A010.01A	3	195778765	195803855	18	0.215	NEUTRAL	NA	1	TFRC
TCGA.AG.4009.01A	3	195778765	196241958	67	-0.0341	NEUTRAL	NA	9	"PCYT1A,RNF168,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,UBXN7,ZDHHC19"
TCGA.AG.A01W.01A	3	195794980	195874034	23	-0.2526	NEUTRAL	NA	1	TFRC
TCGA.AG.A01W.01A	3	195888860	196989954	91	0.0858	NEUTRAL	NA	19	"CEP19,DLG1,FBXO45,MFI2,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TM4SF19,UBXN7,WDR53,ZDHHC19"
TCGA.AA.A00N.01A	3	195925139	195965527	17	-0.4367	NEUTRAL	NA	3	"PCYT1A,SLC51A,ZDHHC19"
TCGA.AG.3909.01A	3	195925139	195965527	14	-0.3874	NEUTRAL	NA	3	"PCYT1A,SLC51A,ZDHHC19"
TCGA.AG.3906.01A	3	195925616	196088653	29	0.3577	NEUTRAL	NA	6	"PCYT1A,SLC51A,TCTEX1D2,TM4SF19,UBXN7,ZDHHC19"
TCGA.AA.A010.01A	3	195959887	196236340	37	0.0805	NEUTRAL	NA	7	"PCYT1A,RNF168,SLC51A,SMCO1,TCTEX1D2,TM4SF19,UBXN7"
TCGA.AA.3509.01A	3	195975041	196656428	69	-0.4814	NEUTRAL	NA	13	"CEP19,FBXO45,NRROS,PAK2,PCYT1A,PIGX,RNF168,SENP5,SMCO1,TCTEX1D2,TM4SF19,UBXN7,WDR53"
TCGA.AA.A02E.01A	3	195984607	197765401	188	-0.0253	NEUTRAL	NA	24	"BDH1,CEP19,DLG1,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,RNF168,RPL35A,SENP5,SMCO1,TCTEX1D2,TM4SF19,UBXN7,WDR53"
TCGA.CK.5914.01A	3	196044864	196215455	21	-0.2239	NEUTRAL	NA	4	"RNF168,TCTEX1D2,TM4SF19,UBXN7"
TCGA.AA.A00F.01A	3	196044864	196778392	65	0.1207	NEUTRAL	NA	16	"CEP19,DLG1,FBXO45,MFI2,NCBP2,NRROS,PAK2,PIGX,PIGZ,RNF168,SENP5,SMCO1,TCTEX1D2,TM4SF19,UBXN7,WDR53"
TCGA.AG.3909.01A	3	196053773	196098740	8	0.0599	NEUTRAL	NA	2	"TM4SF19,UBXN7"
TCGA.AA.A01C.01A	3	196054240	196626778	51	-0.3187	NEUTRAL	NA	11	"CEP19,FBXO45,NRROS,PAK2,PIGX,RNF168,SENP5,SMCO1,TM4SF19,UBXN7,WDR53"
TCGA.AG.3906.01A	3	196089113	196241958	17	0.0244	NEUTRAL	NA	3	"RNF168,SMCO1,UBXN7"
TCGA.AG.3909.01A	3	196159138	196215455	6	0.3038	NEUTRAL	NA	2	"RNF168,UBXN7"
TCGA.AG.3906.01A	3	196381360	197765401	156	-0.074	NEUTRAL	NA	16	"BDH1,CEP19,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,NRROS,PAK2,PIGX,PIGZ,RPL35A,SENP5"
TCGA.AA.A010.01A	3	196509471	196555157	14	0.1398	NEUTRAL	NA	1	PAK2
TCGA.AA.A00N.01A	3	196509471	196630352	19	0.1066	NEUTRAL	NA	2	"PAK2,SENP5"
TCGA.AG.3909.01A	3	196509471	196654609	19	0.0914	NEUTRAL	NA	2	"PAK2,SENP5"
TCGA.AG.4009.01A	3	196509471	197765401	146	-0.0925	NEUTRAL	NA	13	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,PAK2,PIGZ,RPL35A,SENP5"
TCGA.CK.5914.01A	3	196528806	197407961	81	-0.1949	NEUTRAL	NA	8	"BDH1,DLG1,KIAA0226,MFI2,NCBP2,PAK2,PIGZ,SENP5"
TCGA.AG.A00C.01A	3	196533408	197765401	143	-0.016	NEUTRAL	NA	13	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,PAK2,PIGZ,RPL35A,SENP5"
TCGA.AA.A02K.01A	3	196554066	197896604	154	0.1408	NEUTRAL	NA	14	"BDH1,DLG1,FAM157A,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,PAK2,PIGZ,RPL35A,SENP5"
TCGA.CM.6163	3	196556140	197833757	237	0.0174	NEUTRAL	NA	13	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,PAK2,PIGZ,RPL35A,SENP5"
TCGA.AA.A010.01A	3	196612023	196673981	14	-0.4599	NEUTRAL	NA	3	"NCBP2,PIGZ,SENP5"
TCGA.CM.6165.01A	3	196612023	197896676	146	-0.0092	NEUTRAL	NA	13	"BDH1,DLG1,FAM157A,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,PIGZ,RPL35A,SENP5"
TCGA.AA.A01C.01A	3	196627168	197585639	98	-0.0375	NEUTRAL	NA	9	"BDH1,DLG1,FYTTD1,KIAA0226,LRCH3,MFI2,NCBP2,PIGZ,SENP5"
TCGA.AA.A01Q.01A	3	196650275	196678662	10	0.3711	NEUTRAL	NA	3	"NCBP2,PIGZ,SENP5"
TCGA.AA.A01F.01A	3	196650275	196792116	28	-0.0307	NEUTRAL	NA	5	"DLG1,MFI2,NCBP2,PIGZ,SENP5"
TCGA.A6.2674	3	196656771	197833757	230	-0.0378	NEUTRAL	NA	12	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,PIGZ,RPL35A,SENP5"
TCGA.AA.3509.01A	3	196657643	196792116	25	-0.0158	NEUTRAL	NA	5	"DLG1,MFI2,NCBP2,PIGZ,SENP5"
TCGA.AA.A01Q.01A	3	196730732	196746448	9	-0.0749	NEUTRAL	NA	1	MFI2
TCGA.AG.3909.01A	3	196748212	197009503	28	0.1423	NEUTRAL	NA	2	"DLG1,MFI2"
TCGA.AG.A014.01A	3	196771444	197765401	107	-0.187	NEUTRAL	NA	8	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AA.A00F.01A	3	196786708	196910455	20	-0.1864	NEUTRAL	NA	1	DLG1
TCGA.AA.A01F.01A	3	196792552	197765401	89	-0.3379	NEUTRAL	NA	8	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AA.A010.01A	3	196865061	197508673	47	-0.1237	NEUTRAL	NA	4	"BDH1,DLG1,FYTTD1,KIAA0226"
TCGA.A6.6648	3	196867870	197833757	184	-0.3017	NEUTRAL	NA	8	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AA.A01Q.01A	3	196921309	197401310	11	0.3059	NEUTRAL	NA	3	"BDH1,DLG1,KIAA0226"
TCGA.AA.A00F.01A	3	196921309	197726075	64	0.1213	NEUTRAL	NA	8	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AA.3509.01A	3	196921309	197896676	94	-0.3012	NEUTRAL	NA	9	"BDH1,DLG1,FAM157A,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AA.3982	3	196980593	197833757	171	0.3099	NEUTRAL	NA	8	"BDH1,DLG1,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AG.A01W.01A	3	197093339	198111566	108	-0.2161	NEUTRAL	NA	8	"BDH1,FAM157A,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AA.A00N.01A	3	197238724	197476796	28	-0.1332	NEUTRAL	NA	3	"BDH1,FYTTD1,KIAA0226"
TCGA.AG.3909.01A	3	197249474	197476796	25	0.3642	NEUTRAL	NA	3	"BDH1,FYTTD1,KIAA0226"
TCGA.AA.A00L.01A	3	197259236	197566130	27	-0.1001	NEUTRAL	NA	4	"BDH1,FYTTD1,KIAA0226,LRCH3"
TCGA.AA.3492	3	197314447	197833757	66	0.0025	NEUTRAL	NA	6	"FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.CK.5914.01A	3	197444797	197896676	64	-0.1676	NEUTRAL	NA	7	"FAM157A,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AA.3660	3	197480212	197833757	50	0.2148	NEUTRAL	NA	5	"FYTTD1,IQCG,LMLN,LRCH3,RPL35A"
TCGA.AG.3909.01A	3	197518148	197592936	17	0.3153	NEUTRAL	NA	1	LRCH3
TCGA.AA.A00L.01A	3	197574259	197765401	38	-0.4709	NEUTRAL	NA	4	"IQCG,LMLN,LRCH3,RPL35A"
TCGA.AA.A01C.01A	3	197592220	197765401	33	-0.3212	NEUTRAL	NA	4	"IQCG,LMLN,LRCH3,RPL35A"
TCGA.AA.A00N.01A	3	197596984	197703422	20	-0.4677	NEUTRAL	NA	4	"IQCG,LMLN,LRCH3,RPL35A"
TCGA.AG.3909.01A	3	197596984	197703422	20	-0.2558	NEUTRAL	NA	4	"IQCG,LMLN,LRCH3,RPL35A"
TCGA.AA.3967.01A	3	197618265	197765401	28	0.1021	NEUTRAL	NA	3	"IQCG,LMLN,RPL35A"
TCGA.AA.A02H.01A	3	197639482	197765401	26	-0.1899	NEUTRAL	NA	3	"IQCG,LMLN,RPL35A"
TCGA.AA.A00N.01A	3	197707177	197765401	12	0.3471	NEUTRAL	NA	1	LMLN
TCGA.AG.3909.01A	3	197707177	197765401	11	0.3287	NEUTRAL	NA	1	LMLN
TCGA.AA.A01Q.01A	3	197717393	197765401	8	0.2163	NEUTRAL	NA	1	LMLN
TCGA.AA.A00F.01A	3	197746073	197765401	5	-0.2495	NEUTRAL	NA	1	LMLN
TCGA.AG.3898	3	197793904	197833757	5	-0.3904	NEUTRAL	NA	0	None
TCGA.DC.6160.01A	3	198039554	199381073	147	-0.0587	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	3	198114743	198493908	50	0.167	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	3	198114749	198276513	29	0.0551	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	3	198287025	199381073	110	-0.1458	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	3	198733857	199381001	92	-0.0265	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	4	43303	26328597	1434	-0.0398	NEUTRAL	NA	160	Too-Many
TCGA.F5.6811.01A	4	43303	35769891	1457	-0.0308	NEUTRAL	NA	164	Too-Many
TCGA.DC.6160.01A	4	43303	191185128	7235	-0.4594	NEUTRAL	NA	734	Too-Many
TCGA.AG.A01W.01A	4	43304	644210	64	-0.4023	NEUTRAL	NA	7	"PDE6B,PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.A036.01A	4	43304	191185290	7233	-0.1776	NEUTRAL	NA	734	Too-Many
TCGA.AG.4009.01A	4	53303	59932	3	0.2644	NEUTRAL	NA	2	"ZNF595,ZNF718"
TCGA.AZ.4684.01A	4	53303	289768	13	0.2702	NEUTRAL	NA	3	"ZNF595,ZNF718,ZNF732"
TCGA.AA.A00L.01A	4	53303	367311	17	-0.0507	NEUTRAL	NA	4	"ZNF141,ZNF595,ZNF718,ZNF732"
TCGA.AA.A00D.01A	4	53303	466293	19	0.3433	NEUTRAL	NA	5	"ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.CK.5914.01A	4	53303	493098	27	-0.0231	NEUTRAL	NA	6	"PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A01Q.01A	4	53303	502578	23	0.225	NEUTRAL	NA	6	"PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.A015.01A	4	53303	502578	31	-0.4365	NEUTRAL	NA	6	"PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.A016.01A	4	53303	520776	35	-0.4969	NEUTRAL	NA	6	"PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.A01L.01A	4	53303	629627	42	-0.2448	NEUTRAL	NA	7	"PDE6B,PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3930.01A	4	53303	652677	49	-0.4875	NEUTRAL	NA	7	"PDE6B,PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3939.01A	4	53303	652677	49	-0.3192	NEUTRAL	NA	7	"PDE6B,PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.A00C.01A	4	53303	891772	81	0.094	NEUTRAL	NA	13	"ATP5I,CPLX1,GAK,MFSD7,MYL5,PCGF3,PDE6B,PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AF.3914.01A	4	53303	997082	125	-0.3823	NEUTRAL	NA	17	"ATP5I,CPLX1,DGKQ,GAK,IDUA,MFSD7,MYL5,PCGF3,PDE6B,PIGG,SLC26A1,TMEM175,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.3906.01A	4	53303	1659107	141	-0.1078	NEUTRAL	NA	26	"ATP5I,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFRL1,GAK,IDUA,MAEA,MFSD7,MYL5,NKX1-1,PCGF3,PDE6B,PIGG,RNF212,SLC26A1,SPON2,TMEM175,UVSSA,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A00J.01A	4	53303	1725415	164	0.1002	NEUTRAL	NA	29	"ATP5I,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFRL1,GAK,IDUA,MAEA,MFSD7,MYL5,NKX1-1,PCGF3,PDE6B,PIGG,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A024.01A	4	53303	1825364	167	0.2614	NEUTRAL	NA	31	"ATP5I,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,GAK,IDUA,LETM1,MAEA,MFSD7,MYL5,NKX1-1,PCGF3,PDE6B,PIGG,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.A00Y.01A	4	53303	2935251	285	-0.3569	NEUTRAL	NA	46	"ADD1,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,HAUS3,IDUA,LETM1,MAEA,MFSD10,MFSD7,MXD4,MYL5,NAT8L,NELFA,NKX1-1,PCGF3,PDE6B,PIGG,POLN,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.3611.01A	4	53303	6473821	553	-0.3678	NEUTRAL	NA	70	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.A032.01A	4	53303	7031988	499	-0.0153	NEUTRAL	NA	77	"ADD1,ADRA2C,ATP5I,BLOC1S4,C4orf48,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,RGS12,RNF212,RNF4,S100P,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A00F.01A	4	53303	7795381	577	-0.0599	NEUTRAL	NA	83	"ADD1,ADRA2C,AFAP1,ATP5I,BLOC1S4,C4orf48,CCDC96,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,GRPEL1,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,PSAPL1,RGS12,RNF212,RNF4,S100P,SH3BP2,SLBP,SLC26A1,SORCS2,SPON2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.A01N.01A	4	53303	9485972	669	-0.3977	NEUTRAL	NA	113	Too-Many
TCGA.AG.A025.01A	4	53303	10502851	715	-0.2737	NEUTRAL	NA	118	Too-Many
TCGA.AA.A00O.01A	4	53303	10522364	618	-0.2627	NEUTRAL	NA	118	Too-Many
TCGA.AA.A029.01A	4	53303	10559952	614	-0.4809	NEUTRAL	NA	118	Too-Many
TCGA.AY.A54L.01A	4	53303	15516303	1005	-0.0842	NEUTRAL	NA	125	Too-Many
TCGA.AG.A023.01A	4	53303	17824569	848	-0.2368	NEUTRAL	NA	141	Too-Many
TCGA.AG.A01J.01A	4	53303	20541017	875	-0.2187	NEUTRAL	NA	143	Too-Many
TCGA.AG.3891.01A	4	53303	25160528	1165	-0.0533	NEUTRAL	NA	153	Too-Many
TCGA.A6.3810.01A	4	53303	26750016	1446	-0.122	NEUTRAL	NA	162	Too-Many
TCGA.CK.4948.01B	4	53303	37687764	1520	-0.2496	NEUTRAL	NA	169	Too-Many
TCGA.AA.3815.01A	4	53303	37836193	1435	-0.0544	NEUTRAL	NA	170	Too-Many
TCGA.AG.A008.01A	4	53303	46060196	1668	-0.1844	NEUTRAL	NA	209	Too-Many
TCGA.AA.3862.01A	4	53303	56435847	2279	-0.3199	NEUTRAL	NA	247	Too-Many
TCGA.AA.3980.01A	4	53303	56724439	2339	-0.1826	NEUTRAL	NA	249	Too-Many
TCGA.AA.A017.01A	4	53303	57221356	2009	0.0156	NEUTRAL	NA	252	Too-Many
TCGA.AG.A014.01A	4	53303	57268215	2095	-0.1049	NEUTRAL	NA	253	Too-Many
TCGA.CM.6165.01A	4	53303	57687705	2487	-0.0123	NEUTRAL	NA	259	Too-Many
TCGA.AA.A01C.01A	4	53303	69341929	2342	-0.2772	NEUTRAL	NA	276	Too-Many
TCGA.AG.A011.01A	4	53303	69362324	2342	0.1778	NEUTRAL	NA	276	Too-Many
TCGA.AA.A01F.01A	4	53303	69512771	2018	-0.2886	NEUTRAL	NA	278	Too-Many
TCGA.AG.A00H.01A	4	53303	77969372	2923	-0.3153	NEUTRAL	NA	359	Too-Many
TCGA.CM.4744.01A	4	53303	90874158	4064	-0.0537	NEUTRAL	NA	425	Too-Many
TCGA.AA.A00A.01A	4	53303	104035572	3388	-0.4482	NEUTRAL	NA	466	Too-Many
TCGA.CM.4750.01A	4	53303	184367212	6927	-0.1483	NEUTRAL	NA	701	Too-Many
TCGA.AA.A01I.01A	4	53303	185681469	6444	-0.0729	NEUTRAL	NA	711	Too-Many
TCGA.AA.3967.01A	4	53303	187509756	6810	-0.3419	NEUTRAL	NA	729	Too-Many
TCGA.AA.A004.01A	4	53303	190947494	6528	-0.0798	NEUTRAL	NA	734	Too-Many
TCGA.AA.A01D.01A	4	53303	190947494	6504	0.0105	NEUTRAL	NA	734	Too-Many
TCGA.AA.A02J.01A	4	53303	190947494	6524	-0.0864	NEUTRAL	NA	734	Too-Many
TCGA.AA.A02R.01A	4	53303	190947494	6560	-0.0768	NEUTRAL	NA	734	Too-Many
TCGA.AA.A02W.01A	4	53303	190947494	6640	-0.3544	NEUTRAL	NA	734	Too-Many
TCGA.AG.A02X.01A	4	53303	190947494	6723	-0.2679	NEUTRAL	NA	734	Too-Many
TCGA.AH.6549.01A	4	53303	190947494	7227	-0.0648	NEUTRAL	NA	734	Too-Many
TCGA.DM.A282.01A	4	53303	190947494	7233	7.00E-04	NEUTRAL	NA	734	Too-Many
TCGA.AA.A02K.01A	4	53304	667918	77	-0.3161	NEUTRAL	NA	8	"ATP5I,PDE6B,PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3870	4	69712	71565	3	-0.0662	NEUTRAL	NA	2	"ZNF595,ZNF718"
TCGA.A6.6653	4	69712	89608	12	0.2037	NEUTRAL	NA	2	"ZNF595,ZNF718"
TCGA.DM.A28F	4	69712	230236	35	-0.0747	NEUTRAL	NA	2	"ZNF595,ZNF718"
TCGA.AA.3941	4	69712	266862	39	0.0196	NEUTRAL	NA	3	"ZNF595,ZNF718,ZNF732"
TCGA.AZ.4614	4	69712	354050	48	-0.0506	NEUTRAL	NA	4	"ZNF141,ZNF595,ZNF718,ZNF732"
TCGA.AA.3844	4	69712	434078	55	-0.2582	NEUTRAL	NA	5	"ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.A6.5661	4	69712	502910	61	0.1559	NEUTRAL	NA	6	"PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3982	4	69712	509177	62	0.1376	NEUTRAL	NA	6	"PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AM.5820	4	69712	509177	62	-0.1299	NEUTRAL	NA	6	"PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.CM.5864	4	69712	1045322	122	-0.1223	NEUTRAL	NA	18	"ATP5I,CPLX1,DGKQ,FGFRL1,GAK,IDUA,MFSD7,MYL5,PCGF3,PDE6B,PIGG,SLC26A1,TMEM175,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.EF.5830	4	69712	1192141	170	0.0794	NEUTRAL	NA	20	"ATP5I,CPLX1,DGKQ,FGFRL1,GAK,IDUA,MFSD7,MYL5,PCGF3,PDE6B,PIGG,RNF212,SLC26A1,SPON2,TMEM175,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.G4.6299	4	69712	2252200	321	-0.1745	NEUTRAL	NA	38	"ATP5I,C4orf48,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,GAK,HAUS3,IDUA,LETM1,MAEA,MFSD7,MXD4,MYL5,NAT8L,NELFA,NKX1-1,PCGF3,PDE6B,PIGG,POLN,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,WHSC1,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.A6.5666	4	69712	3709626	686	0.0477	NEUTRAL	NA	54	"ADD1,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,MAEA,MFSD10,MFSD7,MSANTD1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.A6.6782	4	69712	3765754	708	-0.0172	NEUTRAL	NA	54	"ADD1,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,MAEA,MFSD10,MFSD7,MSANTD1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.NH.A50T	4	69712	4099675	724	-0.34	NEUTRAL	NA	55	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,MAEA,MFSD10,MFSD7,MSANTD1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.A6.2675	4	69712	5396012	1298	0.343	NEUTRAL	NA	64	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,CYTL1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3864	4	69712	5476175	1370	0.1519	NEUTRAL	NA	64	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,CYTL1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3976	4	69712	5619561	1438	-0.3771	NEUTRAL	NA	65	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,CYTL1,DGKQ,DOK7,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3979	4	69712	5619561	1437	-0.0368	NEUTRAL	NA	65	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,CYTL1,DGKQ,DOK7,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.A6.2686	4	69712	5646929	1464	-0.38	NEUTRAL	NA	65	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,CYTL1,DGKQ,DOK7,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.CM.6675	4	69712	7460593	2298	0.0053	NEUTRAL	NA	82	"ADD1,ADRA2C,ATP5I,BLOC1S4,C4orf48,CCDC96,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,GRPEL1,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,PSAPL1,RGS12,RNF212,RNF4,S100P,SH3BP2,SLBP,SLC26A1,SORCS2,SPON2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AY.A71X	4	69712	7621020	2418	-0.1049	NEUTRAL	NA	82	"ADD1,ADRA2C,ATP5I,BLOC1S4,C4orf48,CCDC96,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,GRPEL1,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,PSAPL1,RGS12,RNF212,RNF4,S100P,SH3BP2,SLBP,SLC26A1,SORCS2,SPON2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.QG.A5YX	4	69712	7685757	2426	-0.1771	NEUTRAL	NA	82	"ADD1,ADRA2C,ATP5I,BLOC1S4,C4orf48,CCDC96,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,GRPEL1,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,PSAPL1,RGS12,RNF212,RNF4,S100P,SH3BP2,SLBP,SLC26A1,SORCS2,SPON2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3558	4	69712	8071812	2592	-0.0563	NEUTRAL	NA	85	"ABLIM2,ADD1,ADRA2C,AFAP1,ATP5I,BLOC1S4,C4orf48,CCDC96,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,GRPEL1,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LOC389199,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,PSAPL1,RGS12,RNF212,RNF4,S100P,SH3BP2,SLBP,SLC26A1,SORCS2,SPON2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.D5.6530	4	69712	8558108	2769	-0.0906	NEUTRAL	NA	89	"ABLIM2,ACOX3,ADD1,ADRA2C,AFAP1,ATP5I,BLOC1S4,C4orf48,CCDC96,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,GRPEL1,HAUS3,HGFAC,HTRA3,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LOC389199,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,PSAPL1,RGS12,RNF212,RNF4,S100P,SH3BP2,SH3TC1,SLBP,SLC26A1,SORCS2,SPON2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,TRMT44,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.D5.6923	4	69712	8697174	2813	-0.0311	NEUTRAL	NA	91	"ABLIM2,ACOX3,ADD1,ADRA2C,AFAP1,ATP5I,BLOC1S4,C4orf48,CCDC96,CFAP99,CPLX1,CPZ,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GPR78,GRK4,GRPEL1,HAUS3,HGFAC,HTRA3,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LOC389199,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,PSAPL1,RGS12,RNF212,RNF4,S100P,SH3BP2,SH3TC1,SLBP,SLC26A1,SORCS2,SPON2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,TRMT44,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3977	4	69712	9381190	2820	0.1371	NEUTRAL	NA	112	Too-Many
TCGA.AA.3858	4	69712	10273835	3183	-0.2655	NEUTRAL	NA	116	Too-Many
TCGA.AG.3885	4	69712	10383004	3255	-0.0887	NEUTRAL	NA	116	Too-Many
TCGA.F5.6814	4	69712	10386972	3248	0.1821	NEUTRAL	NA	116	Too-Many
TCGA.AA.3811	4	69712	10689261	3372	0.2682	NEUTRAL	NA	118	Too-Many
TCGA.AA.3850	4	69712	10698264	3393	0.31385	NEUTRAL	NA	118	Too-Many
TCGA.CM.5862	4	69712	11481393	3780	0.2194	NEUTRAL	NA	119	Too-Many
TCGA.AF.6672	4	69712	12253995	4117	-0.4051	NEUTRAL	NA	119	Too-Many
TCGA.AA.3989	4	69712	12343574	4135	0.0745	NEUTRAL	NA	119	Too-Many
TCGA.F5.6465	4	69712	14002654	4769	0.3116	NEUTRAL	NA	122	Too-Many
TCGA.AA.3532	4	69712	16541431	5891	0.2073	NEUTRAL	NA	134	Too-Many
TCGA.A6.4105	4	69712	16960329	6062	-0.348	NEUTRAL	NA	134	Too-Many
TCGA.DY.A1DC	4	69712	19088385	6803	-0.0332	NEUTRAL	NA	142	Too-Many
TCGA.F4.6460	4	69712	20064308	7043	-0.0076	NEUTRAL	NA	142	Too-Many
TCGA.CI.6624	4	69712	20246883	7102	-0.1621	NEUTRAL	NA	142	Too-Many
TCGA.EI.7004	4	69712	20594903	7180	-0.3715	NEUTRAL	NA	143	Too-Many
TCGA.D5.5538	4	69712	21455992	7498	-0.024	NEUTRAL	NA	145	Too-Many
TCGA.AG.3890	4	69712	22210871	7795	-0.3812	NEUTRAL	NA	145	Too-Many
TCGA.A6.2677	4	69712	25098314	8223	-0.102	NEUTRAL	NA	152	Too-Many
TCGA.AA.3866	4	69712	25772476	9081	-0.1882	NEUTRAL	NA	158	Too-Many
TCGA.F4.6704	4	69712	25872756	9120	-0.4407	NEUTRAL	NA	158	Too-Many
TCGA.D5.6931	4	69712	26418637	9306	-0.0198	NEUTRAL	NA	160	Too-Many
TCGA.D5.6929	4	69712	28327376	9915	-0.0534	NEUTRAL	NA	163	Too-Many
TCGA.AA.3851	4	69712	29069893	10129	-0.1416	NEUTRAL	NA	163	Too-Many
TCGA.AG.3612	4	69712	29102021	10084	-0.0617	NEUTRAL	NA	163	Too-Many
TCGA.AZ.4681	4	69712	29519191	10262	0.0445	NEUTRAL	NA	163	Too-Many
TCGA.5M.AAT5	4	69712	35495062	11749	-0.3952	NEUTRAL	NA	164	Too-Many
TCGA.NH.A6GC	4	69712	35495062	11738	-0.0077	NEUTRAL	NA	164	Too-Many
TCGA.A6.6652	4	69712	35979626	11910	-0.006	NEUTRAL	NA	164	Too-Many
TCGA.AA.3875	4	69712	38010292	12779	0.0003	NEUTRAL	NA	172	Too-Many
TCGA.DT.5265	4	69712	38087104	12790	-0.0212	NEUTRAL	NA	172	Too-Many
TCGA.AA.3496	4	69712	39116340	13198	-0.017	NEUTRAL	NA	179	Too-Many
TCGA.AA.3975	4	69712	40421567	13492	-0.0195	NEUTRAL	NA	191	Too-Many
TCGA.F5.6863	4	69712	41142229	13728	-0.0123	NEUTRAL	NA	194	Too-Many
TCGA.AA.3685	4	69712	43145073	14477	0.098	NEUTRAL	NA	204	Too-Many
TCGA.AF.2692	4	69712	43884367	14660	0.1027	NEUTRAL	NA	204	Too-Many
TCGA.DC.4749	4	69712	43983179	14690	0.3331	NEUTRAL	NA	204	Too-Many
TCGA.5M.AAT4	4	69712	44997959	14949	-0.176	NEUTRAL	NA	208	Too-Many
TCGA.AD.6899	4	69712	46081561	15137	-0.5122	NEUTRAL	NA	209	Too-Many
TCGA.AZ.6607	4	69712	46315979	15176	-0.4343	NEUTRAL	NA	210	Too-Many
TCGA.AA.3488	4	69712	46421875	15226	-0.4513	NEUTRAL	NA	210	Too-Many
TCGA.F4.6461	4	69712	47629865	15489	0.0002	NEUTRAL	NA	216	Too-Many
TCGA.AA.3712	4	69712	48115263	15661	-0.3815	NEUTRAL	NA	220	Too-Many
TCGA.A6.A56B	4	69712	48933609	15718	-0.4634	NEUTRAL	NA	227	Too-Many
TCGA.BM.6198	4	69712	49057911	15813	-0.44225	NEUTRAL	NA	228	Too-Many
TCGA.CM.6679	4	69712	49057911	15773	-0.40655	NEUTRAL	NA	228	Too-Many
TCGA.AA.3511	4	69712	49063478	15781	0.0312	NEUTRAL	NA	228	Too-Many
TCGA.AA.3548	4	69712	49063478	15827	0.0252	NEUTRAL	NA	228	Too-Many
TCGA.AG.3902	4	69712	49063478	15773	-0.4328	NEUTRAL	NA	228	Too-Many
TCGA.CA.6719	4	69712	49063478	15775	-0.0186	NEUTRAL	NA	228	Too-Many
TCGA.F5.6812	4	69712	49063478	15786	-0.0139	NEUTRAL	NA	228	Too-Many
TCGA.NH.A6GA	4	69712	49063478	15800	0.0154	NEUTRAL	NA	228	Too-Many
TCGA.AG.A01Y	4	69712	49584108	15777	-0.0173	NEUTRAL	NA	228	Too-Many
TCGA.A6.6648	4	69712	52698756	15817	-0.3024	NEUTRAL	NA	228	Too-Many
TCGA.DM.A1D8	4	69712	52698756	15800	-0.4469	NEUTRAL	NA	228	Too-Many
TCGA.D5.6533	4	69712	53111801	15856	0.1106	NEUTRAL	NA	232	Too-Many
TCGA.AA.A01Z	4	69712	53344962	15950	-0.0066	NEUTRAL	NA	232	Too-Many
TCGA.CM.6172	4	69712	53794191	16047	0.0043	NEUTRAL	NA	236	Too-Many
TCGA.DM.A1DB	4	69712	55073672	16460	-0.015	NEUTRAL	NA	240	Too-Many
TCGA.AF.3911	4	69712	56290557	16885	-0.4546	NEUTRAL	NA	245	Too-Many
TCGA.CI.6621	4	69712	56580146	16940	0.0716	NEUTRAL	NA	248	Too-Many
TCGA.D5.6532	4	69712	57809597	17307	-0.0021	NEUTRAL	NA	260	Too-Many
TCGA.AF.6136	4	69712	61028532	18362	-0.3156	NEUTRAL	NA	263	Too-Many
TCGA.G4.6322	4	69712	62150058	18702	0.0073	NEUTRAL	NA	263	Too-Many
TCGA.NH.A5IV	4	69712	64105562	19122	-0.0139	NEUTRAL	NA	264	Too-Many
TCGA.CM.5349	4	69712	64107662	19154	0.0018	NEUTRAL	NA	264	Too-Many
TCGA.EI.6514	4	69712	64125167	19140	-0.0738	NEUTRAL	NA	264	Too-Many
TCGA.DM.A1D9	4	69712	64131237	19145	-0.0073	NEUTRAL	NA	264	Too-Many
TCGA.DM.A1DA	4	69712	64131237	19160	-0.1669	NEUTRAL	NA	264	Too-Many
TCGA.AA.3955	4	69712	64241944	19174	-0.105	NEUTRAL	NA	264	Too-Many
TCGA.AY.4070	4	69712	66132226	19581	-0.0398	NEUTRAL	NA	265	Too-Many
TCGA.G4.6628	4	69712	66219858	19649	-0.0157	NEUTRAL	NA	266	Too-Many
TCGA.D5.6536	4	69712	67791856	20182	0.0009	NEUTRAL	NA	266	Too-Many
TCGA.AA.A01T	4	69712	69657898	20588	-0.3026	NEUTRAL	NA	278	Too-Many
TCGA.AA.3831	4	69712	74944448	21959	-0.0036	NEUTRAL	NA	329	Too-Many
TCGA.AA.3680	4	69712	75421171	22130	0.0075	NEUTRAL	NA	334	Too-Many
TCGA.DM.A28A	4	69712	76762673	22448	-0.2761	NEUTRAL	NA	342	Too-Many
TCGA.CK.6746	4	69712	77285832	22628	-0.0124	NEUTRAL	NA	355	Too-Many
TCGA.F5.6864	4	69712	77794235	22820	0.0006	NEUTRAL	NA	356	Too-Many
TCGA.AA.3846	4	69712	78507697	23207	-0.4206	NEUTRAL	NA	361	Too-Many
TCGA.EI.6509	4	69712	82375935	24296	0.0111	NEUTRAL	NA	376	Too-Many
TCGA.G4.6294	4	69712	83069932	24594	0.004	NEUTRAL	NA	376	Too-Many
TCGA.AA.A01S	4	69712	83817815	24806	-0.00545	NEUTRAL	NA	382	Too-Many
TCGA.CM.5868	4	69712	85565629	25335	-0.0491	NEUTRAL	NA	394	Too-Many
TCGA.DM.A1HB	4	69712	90644453	26326	-0.0156	NEUTRAL	NA	423	Too-Many
TCGA.3L.AA1B	4	69712	90837979	26828	0.1732	NEUTRAL	NA	425	Too-Many
TCGA.AH.6544	4	69712	91064461	26834	0.0198	NEUTRAL	NA	426	Too-Many
TCGA.AY.A8YK	4	69712	91204182	26915	0.2148	NEUTRAL	NA	426	Too-Many
TCGA.A6.2678	4	69712	91221452	26919	0.0153	NEUTRAL	NA	426	Too-Many
TCGA.EI.6882	4	69712	91224163	26866	-0.0025	NEUTRAL	NA	426	Too-Many
TCGA.AD.6965	4	69712	91271364	26887	-0.3311	NEUTRAL	NA	426	Too-Many
TCGA.DY.A1DD	4	69712	91287151	26941	-0.0065	NEUTRAL	NA	426	Too-Many
TCGA.G4.6303	4	69712	91287203	26945	-0.0125	NEUTRAL	NA	426	Too-Many
TCGA.CM.4752	4	69712	91294910	26918	0.1051	NEUTRAL	NA	426	Too-Many
TCGA.D5.6535	4	69712	91350424	26970	0.0004	NEUTRAL	NA	426	Too-Many
TCGA.G4.6317	4	69712	91450065	26979	-0.001	NEUTRAL	NA	426	Too-Many
TCGA.DM.A0XD	4	69712	91496745	26888	-0.0006	NEUTRAL	NA	426	Too-Many
TCGA.D5.6540	4	69712	91563455	26961	-0.0072	NEUTRAL	NA	426	Too-Many
TCGA.AA.3715	4	69712	91614699	27035	-0.0217	NEUTRAL	NA	426	Too-Many
TCGA.DC.6682	4	69712	91630042	26980	0.0603	NEUTRAL	NA	426	Too-Many
TCGA.AA.3529	4	69712	91666669	27031	0.0102	NEUTRAL	NA	426	Too-Many
TCGA.A6.6780	4	69712	91822310	27014	-0.0071	NEUTRAL	NA	426	Too-Many
TCGA.A6.3807	4	69712	91925783	26956	-0.0075	NEUTRAL	NA	426	Too-Many
TCGA.F5.6464	4	69712	91941941	27115	-0.0035	NEUTRAL	NA	426	Too-Many
TCGA.G4.6626	4	69712	92032941	27127	-0.3808	NEUTRAL	NA	426	Too-Many
TCGA.T9.A92H	4	69712	92037950	27136	-0.2826	NEUTRAL	NA	426	Too-Many
TCGA.AA.3877	4	69712	92066775	27128	-0.0047	NEUTRAL	NA	426	Too-Many
TCGA.AF.3913	4	69712	92231313	27088	-0.059	NEUTRAL	NA	426	Too-Many
TCGA.AG.4021	4	69712	94681862	27635	0.0313	NEUTRAL	NA	427	Too-Many
TCGA.CK.4951	4	69712	95896343	27860	0.0054	NEUTRAL	NA	432	Too-Many
TCGA.G4.6295	4	69712	95953100	28019	-0.3966	NEUTRAL	NA	432	Too-Many
TCGA.DM.A1HA	4	69712	96148669	28076	0.024	NEUTRAL	NA	433	Too-Many
TCGA.AA.3681	4	69712	104485002	30303	-0.0264	NEUTRAL	NA	466	Too-Many
TCGA.DM.A1D7	4	69712	104672279	30348	-0.047	NEUTRAL	NA	467	Too-Many
TCGA.AF.A56N	4	69712	105715930	30513	-0.039	NEUTRAL	NA	468	Too-Many
TCGA.CL.4957	4	69712	107251399	30928	-0.0103	NEUTRAL	NA	476	Too-Many
TCGA.AG.A02N	4	69712	107853995	31015	-0.0029	NEUTRAL	NA	478	Too-Many
TCGA.AG.3882	4	69712	108624906	31299	-0.0157	NEUTRAL	NA	479	Too-Many
TCGA.A6.6781	4	69712	110166504	28832	0.0123	NEUTRAL	NA	487	Too-Many
TCGA.AZ.4308	4	69712	110682486	31781	0.0178	NEUTRAL	NA	492	Too-Many
TCGA.AG.3731	4	69712	114762919	33049	-0.1131	NEUTRAL	NA	508	Too-Many
TCGA.AZ.4616	4	69712	115171249	33089	-0.2182	NEUTRAL	NA	509	Too-Many
TCGA.D5.6538	4	69712	116505743	33475	0.0029	NEUTRAL	NA	511	Too-Many
TCGA.DY.A1DF	4	69712	117444869	33666	-0.0054	NEUTRAL	NA	511	Too-Many
TCGA.D5.6898	4	69712	122274143	34987	0.0183	NEUTRAL	NA	527	Too-Many
TCGA.CM.6163	4	69712	123738509	35300	-0.3802	NEUTRAL	NA	538	Too-Many
TCGA.AF.2687	4	69712	128852056	36611	-0.2238	NEUTRAL	NA	549	Too-Many
TCGA.DM.A1D4	4	69712	130595237	37150	0.002	NEUTRAL	NA	555	Too-Many
TCGA.A6.6650	4	69712	134276887	34500	-0.0244	NEUTRAL	NA	556	Too-Many
TCGA.AU.3779	4	69712	134621562	38090	-0.2631	NEUTRAL	NA	556	Too-Many
TCGA.EI.6506	4	69712	135093115	38092	1.00E-04	NEUTRAL	NA	556	Too-Many
TCGA.AA.3495	4	69712	135721979	38282	-0.0072	NEUTRAL	NA	557	Too-Many
TCGA.AG.3896	4	69712	142723892	40179	-0.0079	NEUTRAL	NA	577	Too-Many
TCGA.AA.3814	4	69712	144959326	40930	-0.0278	NEUTRAL	NA	584	Too-Many
TCGA.DC.6155	4	69712	146021200	40887	0.0141	NEUTRAL	NA	588	Too-Many
TCGA.D5.6531	4	69712	146584941	41201	-0.1826	NEUTRAL	NA	591	Too-Many
TCGA.AG.3727	4	69712	149762174	42154	-0.0025	NEUTRAL	NA	602	Too-Many
TCGA.A6.2681	4	69712	150723323	42308	0.1374	NEUTRAL	NA	602	Too-Many
TCGA.CA.6718	4	69712	151112504	42280	0	NEUTRAL	NA	603	Too-Many
TCGA.AA.A01R	4	69712	151824965	42519	0	NEUTRAL	NA	605	Too-Many
TCGA.A6.2685	4	69712	152431769	42553	0	NEUTRAL	NA	609	Too-Many
TCGA.F4.6854	4	69712	152789392	42604	-0.0084	NEUTRAL	NA	610	Too-Many
TCGA.DM.A28C	4	69712	152989475	42757	0.0255	NEUTRAL	NA	610	Too-Many
TCGA.AA.3956	4	69712	153229867	42843	-0.1192	NEUTRAL	NA	610	Too-Many
TCGA.AG.A020	4	69712	154420324	43124	-0.0015	NEUTRAL	NA	618	Too-Many
TCGA.AA.3514	4	69712	155848687	43708	-0.0278	NEUTRAL	NA	628	Too-Many
TCGA.AA.3530	4	69712	156185573	43767	-0.0627	NEUTRAL	NA	629	Too-Many
TCGA.AA.3560	4	69712	159246916	44742	0.2003	NEUTRAL	NA	640	Too-Many
TCGA.AA.3494	4	69712	159630816	44790	0.0059	NEUTRAL	NA	644	Too-Many
TCGA.AF.5654	4	69712	161666366	45268	-0.0101	NEUTRAL	NA	647	Too-Many
TCGA.G4.6310	4	69712	165434567	46471	-0.2337	NEUTRAL	NA	655	Too-Many
TCGA.D5.6927	4	69712	165568017	46450	-0.0034	NEUTRAL	NA	655	Too-Many
TCGA.CA.5254	4	69712	166510218	46712	0.0038	NEUTRAL	NA	663	Too-Many
TCGA.AA.3522	4	69712	169985501	47868	-0.3507	NEUTRAL	NA	670	Too-Many
TCGA.AY.6196	4	69712	171619312	47850	-0.1113	NEUTRAL	NA	676	Too-Many
TCGA.AA.3544	4	69712	174114088	48995	-0.026	NEUTRAL	NA	678	Too-Many
TCGA.AA.3660	4	69712	174667331	49119	0.0059	NEUTRAL	NA	682	Too-Many
TCGA.DM.A1D6	4	69712	175300603	49266	-0.0104	NEUTRAL	NA	684	Too-Many
TCGA.AZ.4682	4	69712	175624313	49367	-0.0068	NEUTRAL	NA	686	Too-Many
TCGA.A6.5667	4	69712	176458258	49580	-0.379	NEUTRAL	NA	687	Too-Many
TCGA.D5.5539	4	69712	176488433	49566	-0.0007	NEUTRAL	NA	687	Too-Many
TCGA.A6.6137	4	69712	176716521	49666	0.0179	NEUTRAL	NA	688	Too-Many
TCGA.AA.3713	4	69712	177719512	50007	0.019	NEUTRAL	NA	693	Too-Many
TCGA.CA.5797	4	69712	177870553	50009	-0.1911	NEUTRAL	NA	693	Too-Many
TCGA.4T.AA8H	4	69712	178897620	50399	0.0058	NEUTRAL	NA	695	Too-Many
TCGA.CM.5341	4	69712	180729529	51032	-0.2101	NEUTRAL	NA	695	Too-Many
TCGA.CI.6622	4	69712	181933055	51444	0.0033	NEUTRAL	NA	695	Too-Many
TCGA.AA.3854	4	69712	183069375	52156	0	NEUTRAL	NA	695	Too-Many
TCGA.AA.3971	4	69712	184955902	52776	-0.0311	NEUTRAL	NA	705	Too-Many
TCGA.CM.5348	4	69712	185137954	52888	-0.0439	NEUTRAL	NA	706	Too-Many
TCGA.CK.6748	4	69712	186589849	53288	0.0244	NEUTRAL	NA	722	Too-Many
TCGA.AA.3666	4	69712	187574900	53844	-0.4559	NEUTRAL	NA	729	Too-Many
TCGA.AZ.6598	4	69712	187842707	53920	0.0129	NEUTRAL	NA	729	Too-Many
TCGA.CA.6715	4	69712	188998740	54039	-0.0033	NEUTRAL	NA	730	Too-Many
TCGA.AG.3581	4	69712	189293685	54340	0.0157	NEUTRAL	NA	732	Too-Many
TCGA.AA.3492	4	69712	189314121	54322	0.0043	NEUTRAL	NA	732	Too-Many
TCGA.A6.6649	4	69712	189359661	54367	-0.0548	NEUTRAL	NA	732	Too-Many
TCGA.DC.6681	4	69712	190491380	54634	0.0204	NEUTRAL	NA	732	Too-Many
TCGA.DY.A1DG	4	69712	190543147	54759	0.2828	NEUTRAL	NA	732	Too-Many
TCGA.5M.AAT6	4	69712	190921708	54825	0.002	NEUTRAL	NA	733	Too-Many
TCGA.5M.AATA	4	69712	190921708	54801	-0.2006	NEUTRAL	NA	733	Too-Many
TCGA.5M.AATE	4	69712	190921708	54815	-0.2263	NEUTRAL	NA	733	Too-Many
TCGA.A6.2674	4	69712	190921708	54815	-0.1706	NEUTRAL	NA	733	Too-Many
TCGA.A6.2679	4	69712	190921708	54763	-0.2168	NEUTRAL	NA	733	Too-Many
TCGA.A6.2680	4	69712	190921708	54744	-0.3521	NEUTRAL	NA	733	Too-Many
TCGA.A6.2682	4	69712	190921708	53849	-0.1255	NEUTRAL	NA	733	Too-Many
TCGA.A6.3809	4	69712	190921708	49787	-0.0029	NEUTRAL	NA	733	Too-Many
TCGA.A6.4107	4	69712	190921708	54787	-0.1005	NEUTRAL	NA	733	Too-Many
TCGA.A6.5656	4	69712	190921708	54604	0.0089	NEUTRAL	NA	733	Too-Many
TCGA.A6.5657	4	69712	190921708	54674	0.0248	NEUTRAL	NA	733	Too-Many
TCGA.A6.5660	4	69712	190921708	54581	-0.0899	NEUTRAL	NA	733	Too-Many
TCGA.A6.5662	4	69712	190921708	54639	-0.0421	NEUTRAL	NA	733	Too-Many
TCGA.A6.5664	4	69712	190921708	54666	0.0025	NEUTRAL	NA	733	Too-Many
TCGA.A6.6138	4	69712	190921708	54831	-0.0205	NEUTRAL	NA	733	Too-Many
TCGA.A6.6141	4	69712	190921708	54775	0.0183	NEUTRAL	NA	733	Too-Many
TCGA.A6.6651	4	69712	190921708	54577	-0.1924	NEUTRAL	NA	733	Too-Many
TCGA.A6.6654	4	69712	190921708	54667	-0.0835	NEUTRAL	NA	733	Too-Many
TCGA.A6.A565	4	69712	190921708	54467	0.0179	NEUTRAL	NA	733	Too-Many
TCGA.A6.A566	4	69712	190921708	54387	-0.0014	NEUTRAL	NA	733	Too-Many
TCGA.AA.3489	4	69712	190921708	54628	-0.0839	NEUTRAL	NA	733	Too-Many
TCGA.AA.3502	4	69712	190921708	54787	0.0219	NEUTRAL	NA	733	Too-Many
TCGA.AA.3510	4	69712	190921708	54777	0.0013	NEUTRAL	NA	733	Too-Many
TCGA.AA.3516	4	69712	190921708	54769	-0.0144	NEUTRAL	NA	733	Too-Many
TCGA.AA.3517	4	69712	190921708	54803	-0.3174	NEUTRAL	NA	733	Too-Many
TCGA.AA.3518	4	69712	190921708	54734	0.0024	NEUTRAL	NA	733	Too-Many
TCGA.AA.3519	4	69712	190921708	54829	0.0084	NEUTRAL	NA	733	Too-Many
TCGA.AA.3524	4	69712	190921708	54798	0.0174	NEUTRAL	NA	733	Too-Many
TCGA.AA.3526	4	69712	190921708	54814	0.01	NEUTRAL	NA	733	Too-Many
TCGA.AA.3527	4	69712	190921708	54824	0.0162	NEUTRAL	NA	733	Too-Many
TCGA.AA.3531	4	69712	190921708	54815	-0.1639	NEUTRAL	NA	733	Too-Many
TCGA.AA.3534	4	69712	190921708	54826	0.0074	NEUTRAL	NA	733	Too-Many
TCGA.AA.3543	4	69712	190921708	54779	-0.005	NEUTRAL	NA	733	Too-Many
TCGA.AA.3555	4	69712	190921708	54840	0.0023	NEUTRAL	NA	733	Too-Many
TCGA.AA.3556	4	69712	190921708	54714	0.0052	NEUTRAL	NA	733	Too-Many
TCGA.AA.3561	4	69712	190921708	54838	-0.0015	NEUTRAL	NA	733	Too-Many
TCGA.AA.3655	4	69712	190921708	54822	0.0083	NEUTRAL	NA	733	Too-Many
TCGA.AA.3662	4	69712	190921708	54814	-0.4401	NEUTRAL	NA	733	Too-Many
TCGA.AA.3663	4	69712	190921708	54700	-0.0015	NEUTRAL	NA	733	Too-Many
TCGA.AA.3667	4	69712	190921708	54855	-0.0298	NEUTRAL	NA	733	Too-Many
TCGA.AA.3673	4	69712	190921708	54859	-0.1014	NEUTRAL	NA	733	Too-Many
TCGA.AA.3675	4	69712	190921708	54857	-0.0026	NEUTRAL	NA	733	Too-Many
TCGA.AA.3678	4	69712	190921708	54856	0.0161	NEUTRAL	NA	733	Too-Many
TCGA.AA.3684	4	69712	190921708	54858	-0.0145	NEUTRAL	NA	733	Too-Many
TCGA.AA.3688	4	69712	190921708	54858	0.0036	NEUTRAL	NA	733	Too-Many
TCGA.AA.3692	4	69712	190921708	54853	-0.0923	NEUTRAL	NA	733	Too-Many
TCGA.AA.3695	4	69712	190921708	54865	-0.3973	NEUTRAL	NA	733	Too-Many
TCGA.AA.3696	4	69712	190921708	54857	0.0033	NEUTRAL	NA	733	Too-Many
TCGA.AA.3710	4	69712	190921708	54794	0	NEUTRAL	NA	733	Too-Many
TCGA.AA.3812	4	69712	190921708	54862	-0.0097	NEUTRAL	NA	733	Too-Many
TCGA.AA.3818	4	69712	190921708	54859	0.0029	NEUTRAL	NA	733	Too-Many
TCGA.AA.3819	4	69712	190921708	54861	-0.0037	NEUTRAL	NA	733	Too-Many
TCGA.AA.3821	4	69712	190921708	54750	0.0143	NEUTRAL	NA	733	Too-Many
TCGA.AA.3833	4	69712	190921708	54858	0.0194	NEUTRAL	NA	733	Too-Many
TCGA.AA.3837	4	69712	190921708	54863	-0.3036	NEUTRAL	NA	733	Too-Many
TCGA.AA.3841	4	69712	190921708	54861	-0.4152	NEUTRAL	NA	733	Too-Many
TCGA.AA.3842	4	69712	190921708	54799	-0.4907	NEUTRAL	NA	733	Too-Many
TCGA.AA.3845	4	69712	190921708	54741	-0.0355	NEUTRAL	NA	733	Too-Many
TCGA.AA.3848	4	69712	190921708	54862	-0.1349	NEUTRAL	NA	733	Too-Many
TCGA.AA.3852	4	69712	190921708	54866	0.0231	NEUTRAL	NA	733	Too-Many
TCGA.AA.3856	4	69712	190921708	54865	-0.3324	NEUTRAL	NA	733	Too-Many
TCGA.AA.3869	4	69712	190921708	54782	0	NEUTRAL	NA	733	Too-Many
TCGA.AA.3947	4	69712	190921708	54755	-0.0174	NEUTRAL	NA	733	Too-Many
TCGA.AA.3949	4	69712	190921708	54779	-0.04	NEUTRAL	NA	733	Too-Many
TCGA.AA.3950	4	69712	190921708	54789	-0.0295	NEUTRAL	NA	733	Too-Many
TCGA.AA.3966	4	69712	190921708	54755	-0.2017	NEUTRAL	NA	733	Too-Many
TCGA.AA.3968	4	69712	190921708	54782	-0.4688	NEUTRAL	NA	733	Too-Many
TCGA.AA.3972	4	69712	190921708	54799	-0.3739	NEUTRAL	NA	733	Too-Many
TCGA.AA.3973	4	69712	190921708	54792	-0.0469	NEUTRAL	NA	733	Too-Many
TCGA.AA.3984	4	69712	190921708	54763	0.0037	NEUTRAL	NA	733	Too-Many
TCGA.AA.3986	4	69712	190921708	54786	-0.017	NEUTRAL	NA	733	Too-Many
TCGA.AA.3994	4	69712	190921708	54745	0.0064	NEUTRAL	NA	733	Too-Many
TCGA.AA.A01P	4	69712	190921708	54746	0.0105	NEUTRAL	NA	733	Too-Many
TCGA.AA.A01V	4	69712	190921708	54782	-0.0113	NEUTRAL	NA	733	Too-Many
TCGA.AA.A01X	4	69712	190921708	54708	-0.3938	NEUTRAL	NA	733	Too-Many
TCGA.AA.A022	4	69712	190921708	54744	-0.0008	NEUTRAL	NA	733	Too-Many
TCGA.AA.A02O	4	69712	190921708	54796	-0.0018	NEUTRAL	NA	733	Too-Many
TCGA.AA.A02Y	4	69712	190921708	54773	-0.0017	NEUTRAL	NA	733	Too-Many
TCGA.AA.A03F	4	69712	190921708	54779	-1.00E-04	NEUTRAL	NA	733	Too-Many
TCGA.AA.A03J	4	69712	190921708	53784	0.0042	NEUTRAL	NA	733	Too-Many
TCGA.AD.5900	4	69712	190921708	54725	0.0252	NEUTRAL	NA	733	Too-Many
TCGA.AD.6548	4	69712	190921708	54639	-0.0002	NEUTRAL	NA	733	Too-Many
TCGA.AD.6888	4	69712	190921708	54744	0.0055	NEUTRAL	NA	733	Too-Many
TCGA.AD.6889	4	69712	190921708	54733	0.0294	NEUTRAL	NA	733	Too-Many
TCGA.AD.6890	4	69712	190921708	54740	0.0021	NEUTRAL	NA	733	Too-Many
TCGA.AD.6895	4	69712	190921708	54738	0.0285	NEUTRAL	NA	733	Too-Many
TCGA.AD.6901	4	69712	190921708	54639	-0.2713	NEUTRAL	NA	733	Too-Many
TCGA.AD.6963	4	69712	190921708	54739	-0.0157	NEUTRAL	NA	733	Too-Many
TCGA.AD.6964	4	69712	190921708	54738	0.0336	NEUTRAL	NA	733	Too-Many
TCGA.AD.A5EJ	4	69712	190921708	54504	0.0167	NEUTRAL	NA	733	Too-Many
TCGA.AF.2689	4	69712	190921708	54795	0	NEUTRAL	NA	733	Too-Many
TCGA.AF.2690	4	69712	190921708	54817	-0.2555	NEUTRAL	NA	733	Too-Many
TCGA.AF.2691	4	69712	190921708	54820	-0.1226	NEUTRAL	NA	733	Too-Many
TCGA.AF.4110	4	69712	190921708	54805	-0.1971	NEUTRAL	NA	733	Too-Many
TCGA.AF.6655	4	69712	190921708	54678	0.0091	NEUTRAL	NA	733	Too-Many
TCGA.AF.A56K	4	69712	190921708	54667	0.0371	NEUTRAL	NA	733	Too-Many
TCGA.AF.A56L	4	69712	190921708	54680	-0.1928	NEUTRAL	NA	733	Too-Many
TCGA.AG.3574	4	69712	190921708	54845	-0.01	NEUTRAL	NA	733	Too-Many
TCGA.AG.3575	4	69712	190921708	54843	0.0134	NEUTRAL	NA	733	Too-Many
TCGA.AG.3580	4	69712	190921708	54836	-0.0027	NEUTRAL	NA	733	Too-Many
TCGA.AG.3583	4	69712	190921708	53557	0.0076	NEUTRAL	NA	733	Too-Many
TCGA.AG.3584	4	69712	190921708	54813	0.0229	NEUTRAL	NA	733	Too-Many
TCGA.AG.3592	4	69712	190921708	54828	-0.164	NEUTRAL	NA	733	Too-Many
TCGA.AG.3594	4	69712	190921708	54835	-0.0004	NEUTRAL	NA	733	Too-Many
TCGA.AG.3598	4	69712	190921708	54715	0.0096	NEUTRAL	NA	733	Too-Many
TCGA.AG.3599	4	69712	190921708	54788	-0.002	NEUTRAL	NA	733	Too-Many
TCGA.AG.3602	4	69712	190921708	54620	-0.0006	NEUTRAL	NA	733	Too-Many
TCGA.AG.3725	4	69712	190921708	54774	-0.4551	NEUTRAL	NA	733	Too-Many
TCGA.AG.3726	4	69712	190921708	54825	-0.0176	NEUTRAL	NA	733	Too-Many
TCGA.AG.3728	4	69712	190921708	54864	-0.2701	NEUTRAL	NA	733	Too-Many
TCGA.AG.3878	4	69712	190921708	54860	-0.0386	NEUTRAL	NA	733	Too-Many
TCGA.AG.3881	4	69712	190921708	54853	-0.2976	NEUTRAL	NA	733	Too-Many
TCGA.AG.3883	4	69712	190921708	54862	-0.3327	NEUTRAL	NA	733	Too-Many
TCGA.AG.3887	4	69712	190921708	54576	0.0032	NEUTRAL	NA	733	Too-Many
TCGA.AG.3892	4	69712	190921708	54637	0.007	NEUTRAL	NA	733	Too-Many
TCGA.AG.3894	4	69712	190921708	54646	0.003	NEUTRAL	NA	733	Too-Many
TCGA.AG.3898	4	69712	190921708	54610	-0.2558	NEUTRAL	NA	733	Too-Many
TCGA.AG.3901	4	69712	190921708	54656	-0.0252	NEUTRAL	NA	733	Too-Many
TCGA.AG.4008	4	69712	190921708	54473	0.0194	NEUTRAL	NA	733	Too-Many
TCGA.AG.4015	4	69712	190921708	54649	-0.4534	NEUTRAL	NA	733	Too-Many
TCGA.AG.4022	4	69712	190921708	54839	0.0467	NEUTRAL	NA	733	Too-Many
TCGA.AG.A026	4	69712	190921708	54762	0.0122	NEUTRAL	NA	733	Too-Many
TCGA.AH.6547	4	69712	190921708	54731	0.0085	NEUTRAL	NA	733	Too-Many
TCGA.AH.6643	4	69712	190921708	54697	-0.373	NEUTRAL	NA	733	Too-Many
TCGA.AH.6644	4	69712	190921708	54667	0.0115	NEUTRAL	NA	733	Too-Many
TCGA.AH.6897	4	69712	190921708	54701	-0.0329	NEUTRAL	NA	733	Too-Many
TCGA.AH.6903	4	69712	190921708	54701	0.0025	NEUTRAL	NA	733	Too-Many
TCGA.AM.5821	4	69712	190921708	54638	-0.0393	NEUTRAL	NA	733	Too-Many
TCGA.AU.6004	4	69712	190921708	54380	0.0406	NEUTRAL	NA	733	Too-Many
TCGA.AY.4071	4	69712	190921708	54572	-0.3579	NEUTRAL	NA	733	Too-Many
TCGA.AY.6197	4	69712	190921708	53692	0.0101	NEUTRAL	NA	733	Too-Many
TCGA.AY.6386	4	69712	190921708	54796	0.0153	NEUTRAL	NA	733	Too-Many
TCGA.AY.A69D	4	69712	190921708	54778	-0.3174	NEUTRAL	NA	733	Too-Many
TCGA.AZ.4315	4	69712	190921708	54766	0.0154	NEUTRAL	NA	733	Too-Many
TCGA.AZ.4323	4	69712	190921708	54611	-0.0472	NEUTRAL	NA	733	Too-Many
TCGA.AZ.4615	4	69712	190921708	54777	0.0072	NEUTRAL	NA	733	Too-Many
TCGA.AZ.5403	4	69712	190921708	54747	0.0213	NEUTRAL	NA	733	Too-Many
TCGA.AZ.5407	4	69712	190921708	54824	-0.0063	NEUTRAL	NA	733	Too-Many
TCGA.AZ.6599	4	69712	190921708	54827	0.0386	NEUTRAL	NA	733	Too-Many
TCGA.AZ.6600	4	69712	190921708	54797	-0.27	NEUTRAL	NA	733	Too-Many
TCGA.AZ.6601	4	69712	190921708	54828	-0.0087	NEUTRAL	NA	733	Too-Many
TCGA.AZ.6603	4	69712	190921708	54695	-0.2061	NEUTRAL	NA	733	Too-Many
TCGA.AZ.6605	4	69712	190921708	54637	-0.0302	NEUTRAL	NA	733	Too-Many
TCGA.AZ.6606	4	69712	190921708	54640	-0.0158	NEUTRAL	NA	733	Too-Many
TCGA.AZ.6608	4	69712	190921708	54629	-0.0124	NEUTRAL	NA	733	Too-Many
TCGA.CA.5255	4	69712	190921708	54654	0.0207	NEUTRAL	NA	733	Too-Many
TCGA.CA.5256	4	69712	190921708	54440	-0.3075	NEUTRAL	NA	733	Too-Many
TCGA.CA.5796	4	69712	190921708	54698	-0.0067	NEUTRAL	NA	733	Too-Many
TCGA.CA.6716	4	69712	190921708	54688	-0.0091	NEUTRAL	NA	733	Too-Many
TCGA.CA.6717	4	69712	190921708	54576	0.0123	NEUTRAL	NA	733	Too-Many
TCGA.CI.6619	4	69712	190921708	54723	-0.1608	NEUTRAL	NA	733	Too-Many
TCGA.CI.6620	4	69712	190921708	54695	-0.4567	NEUTRAL	NA	733	Too-Many
TCGA.CI.6623	4	69712	190921708	54715	-0.1588	NEUTRAL	NA	733	Too-Many
TCGA.CK.4947	4	69712	190921708	54743	0.0208	NEUTRAL	NA	733	Too-Many
TCGA.CK.4950	4	69712	190921708	54331	0.0185	NEUTRAL	NA	733	Too-Many
TCGA.CK.5912	4	69712	190921708	54658	-0.2909	NEUTRAL	NA	733	Too-Many
TCGA.CK.5913	4	69712	190921708	54748	-0.0027	NEUTRAL	NA	733	Too-Many
TCGA.CK.5915	4	69712	190921708	54701	-0.2389	NEUTRAL	NA	733	Too-Many
TCGA.CK.5916	4	69712	190921708	54708	0.0088	NEUTRAL	NA	733	Too-Many
TCGA.CK.6747	4	69712	190921708	54609	0.0108	NEUTRAL	NA	733	Too-Many
TCGA.CK.6751	4	69712	190921708	54496	0	NEUTRAL	NA	733	Too-Many
TCGA.CL.5917	4	69712	190921708	54693	0.0076	NEUTRAL	NA	733	Too-Many
TCGA.CL.5918	4	69712	190921708	54693	0.0077	NEUTRAL	NA	733	Too-Many
TCGA.CM.4743	4	69712	190921708	54816	0.0325	NEUTRAL	NA	733	Too-Many
TCGA.CM.4746	4	69712	190921708	54772	0.0045	NEUTRAL	NA	733	Too-Many
TCGA.CM.4747	4	69712	190921708	54764	0.0171	NEUTRAL	NA	733	Too-Many
TCGA.CM.4748	4	69712	190921708	54795	0.0023	NEUTRAL	NA	733	Too-Many
TCGA.CM.5344	4	69712	190921708	54800	-0.2419	NEUTRAL	NA	733	Too-Many
TCGA.CM.5860	4	69712	190921708	54738	-0.0265	NEUTRAL	NA	733	Too-Many
TCGA.CM.5861	4	69712	190921708	54748	0.0064	NEUTRAL	NA	733	Too-Many
TCGA.CM.5863	4	69712	190921708	54704	-0.083	NEUTRAL	NA	733	Too-Many
TCGA.CM.6161	4	69712	190921708	54720	0.0303	NEUTRAL	NA	733	Too-Many
TCGA.CM.6162	4	69712	190921708	54549	0.0345	NEUTRAL	NA	733	Too-Many
TCGA.CM.6164	4	69712	190921708	54745	-0.1931	NEUTRAL	NA	733	Too-Many
TCGA.CM.6166	4	69712	190921708	54819	0	NEUTRAL	NA	733	Too-Many
TCGA.CM.6167	4	69712	190921708	54804	0	NEUTRAL	NA	733	Too-Many
TCGA.CM.6168	4	69712	190921708	54801	-0.0194	NEUTRAL	NA	733	Too-Many
TCGA.CM.6169	4	69712	190921708	54537	-0.0774	NEUTRAL	NA	733	Too-Many
TCGA.CM.6171	4	69712	190921708	54817	0.0264	NEUTRAL	NA	733	Too-Many
TCGA.CM.6674	4	69712	190921708	54667	0.0095	NEUTRAL	NA	733	Too-Many
TCGA.CM.6676	4	69712	190921708	54601	0	NEUTRAL	NA	733	Too-Many
TCGA.CM.6677	4	69712	190921708	54566	-0.2627	NEUTRAL	NA	733	Too-Many
TCGA.CM.6678	4	69712	190921708	54678	-0.1345	NEUTRAL	NA	733	Too-Many
TCGA.CM.6680	4	69712	190921708	54705	0.0012	NEUTRAL	NA	733	Too-Many
TCGA.D5.5537	4	69712	190921708	54682	-0.3769	NEUTRAL	NA	733	Too-Many
TCGA.D5.5540	4	69712	190921708	54816	-0.4983	NEUTRAL	NA	733	Too-Many
TCGA.D5.5541	4	69712	190921708	54806	0.0051	NEUTRAL	NA	733	Too-Many
TCGA.D5.6529	4	69712	190921708	54820	-0.2273	NEUTRAL	NA	733	Too-Many
TCGA.D5.6534	4	69712	190921708	54656	-0.146	NEUTRAL	NA	733	Too-Many
TCGA.D5.6537	4	69712	190921708	54465	0.0156	NEUTRAL	NA	733	Too-Many
TCGA.D5.6539	4	69712	190921708	54702	0.0163	NEUTRAL	NA	733	Too-Many
TCGA.D5.6541	4	69712	190921708	54828	0.0206	NEUTRAL	NA	733	Too-Many
TCGA.D5.6920	4	69712	190921708	54690	0.0047	NEUTRAL	NA	733	Too-Many
TCGA.D5.6922	4	69712	190921708	54687	-0.0084	NEUTRAL	NA	733	Too-Many
TCGA.D5.6924	4	69712	190921708	54699	-0.1876	NEUTRAL	NA	733	Too-Many
TCGA.D5.6926	4	69712	190921708	54703	-0.196	NEUTRAL	NA	733	Too-Many
TCGA.D5.6928	4	69712	190921708	54699	0.0025	NEUTRAL	NA	733	Too-Many
TCGA.D5.6930	4	69712	190921708	54692	0.0035	NEUTRAL	NA	733	Too-Many
TCGA.D5.7000	4	69712	190921708	54591	0.0032	NEUTRAL	NA	733	Too-Many
TCGA.DC.4745	4	69712	190921708	54831	-0.0323	NEUTRAL	NA	733	Too-Many
TCGA.DC.5337	4	69712	190921708	54625	0.0004	NEUTRAL	NA	733	Too-Many
TCGA.DC.5869	4	69712	190921708	54675	-0.2063	NEUTRAL	NA	733	Too-Many
TCGA.DC.6154	4	69712	190921708	54693	-0.0062	NEUTRAL	NA	733	Too-Many
TCGA.DC.6157	4	69712	190921708	54336	-0.1256	NEUTRAL	NA	733	Too-Many
TCGA.DC.6158	4	69712	190921708	54657	-0.286	NEUTRAL	NA	733	Too-Many
TCGA.DC.6683	4	69712	190921708	54687	-0.0621	NEUTRAL	NA	733	Too-Many
TCGA.DM.A0X9	4	69712	190921708	54793	0.0042	NEUTRAL	NA	733	Too-Many
TCGA.DM.A0XF	4	69712	190921708	54809	0.0075	NEUTRAL	NA	733	Too-Many
TCGA.DM.A1D0	4	69712	190921708	54557	-0.0298	NEUTRAL	NA	733	Too-Many
TCGA.DM.A280	4	69712	190921708	54674	-0.0159	NEUTRAL	NA	733	Too-Many
TCGA.DM.A285	4	69712	190921708	54623	-0.3127	NEUTRAL	NA	733	Too-Many
TCGA.DM.A288	4	69712	190921708	54676	-0.4923	NEUTRAL	NA	733	Too-Many
TCGA.DM.A28E	4	69712	190921708	54674	-0.0053	NEUTRAL	NA	733	Too-Many
TCGA.DM.A28G	4	69712	190921708	54725	-0.0123	NEUTRAL	NA	733	Too-Many
TCGA.DM.A28H	4	69712	190921708	54706	-0.0052	NEUTRAL	NA	733	Too-Many
TCGA.DM.A28K	4	69712	190921708	54662	-0.008	NEUTRAL	NA	733	Too-Many
TCGA.DY.A0XA	4	69712	190921708	54750	-0.1553	NEUTRAL	NA	733	Too-Many
TCGA.EI.6507	4	69712	190921708	54813	0.0087	NEUTRAL	NA	733	Too-Many
TCGA.EI.6511	4	69712	190921708	54805	-0.0513	NEUTRAL	NA	733	Too-Many
TCGA.EI.6512	4	69712	190921708	54827	0	NEUTRAL	NA	733	Too-Many
TCGA.EI.6881	4	69712	190921708	54696	-0.2214	NEUTRAL	NA	733	Too-Many
TCGA.EI.6883	4	69712	190921708	54690	-0.0101	NEUTRAL	NA	733	Too-Many
TCGA.EI.6884	4	69712	190921708	54669	-0.0061	NEUTRAL	NA	733	Too-Many
TCGA.EI.6885	4	69712	190921708	54686	-0.0036	NEUTRAL	NA	733	Too-Many
TCGA.EI.6917	4	69712	190921708	54663	0.0135	NEUTRAL	NA	733	Too-Many
TCGA.F4.6459	4	69712	190921708	54821	-0.0328	NEUTRAL	NA	733	Too-Many
TCGA.F4.6463	4	69712	190921708	54811	0.0213	NEUTRAL	NA	733	Too-Many
TCGA.F4.6569	4	69712	190921708	54832	0.0161	NEUTRAL	NA	733	Too-Many
TCGA.F4.6570	4	69712	190921708	54826	0.0153	NEUTRAL	NA	733	Too-Many
TCGA.F4.6703	4	69712	190921708	54707	-0.0543	NEUTRAL	NA	733	Too-Many
TCGA.F4.6805	4	69712	190921708	54703	-0.0332	NEUTRAL	NA	733	Too-Many
TCGA.F4.6806	4	69712	190921708	54583	0.0038	NEUTRAL	NA	733	Too-Many
TCGA.F4.6807	4	69712	190921708	54664	-0.077	NEUTRAL	NA	733	Too-Many
TCGA.F4.6809	4	69712	190921708	54696	-0.009	NEUTRAL	NA	733	Too-Many
TCGA.F4.6855	4	69712	190921708	54678	-0.3898	NEUTRAL	NA	733	Too-Many
TCGA.F4.6856	4	69712	190921708	54709	-0.008	NEUTRAL	NA	733	Too-Many
TCGA.F5.6571	4	69712	190921708	54707	-0.454	NEUTRAL	NA	733	Too-Many
TCGA.F5.6702	4	69712	190921708	54588	-0.305	NEUTRAL	NA	733	Too-Many
TCGA.F5.6810	4	69712	190921708	54717	-0.2052	NEUTRAL	NA	733	Too-Many
TCGA.F5.6861	4	69712	190921708	54689	-0.0291	NEUTRAL	NA	733	Too-Many
TCGA.G4.6293	4	69712	190921708	54797	0.0352	NEUTRAL	NA	733	Too-Many
TCGA.G4.6297	4	69712	190921708	54808	-0.0358	NEUTRAL	NA	733	Too-Many
TCGA.G4.6298	4	69712	190921708	54821	-0.4645	NEUTRAL	NA	733	Too-Many
TCGA.G4.6302	4	69712	190921708	54819	0.0127	NEUTRAL	NA	733	Too-Many
TCGA.G4.6304	4	69712	190921708	54697	0.0171	NEUTRAL	NA	733	Too-Many
TCGA.G4.6306	4	69712	190921708	54808	0.0165	NEUTRAL	NA	733	Too-Many
TCGA.G4.6307	4	69712	190921708	54829	0.2915	NEUTRAL	NA	733	Too-Many
TCGA.G4.6309	4	69712	190921708	54702	-0.002	NEUTRAL	NA	733	Too-Many
TCGA.G4.6311	4	69712	190921708	54830	-0.0163	NEUTRAL	NA	733	Too-Many
TCGA.G4.6314	4	69712	190921708	54828	-0.0157	NEUTRAL	NA	733	Too-Many
TCGA.G4.6315	4	69712	190921708	54834	-0.1807	NEUTRAL	NA	733	Too-Many
TCGA.G4.6320	4	69712	190921708	54829	-0.0483	NEUTRAL	NA	733	Too-Many
TCGA.G4.6321	4	69712	190921708	54827	-0.001	NEUTRAL	NA	733	Too-Many
TCGA.G4.6323	4	69712	190921708	54828	0.0145	NEUTRAL	NA	733	Too-Many
TCGA.G4.6586	4	69712	190921708	54822	0.0185	NEUTRAL	NA	733	Too-Many
TCGA.G4.6588	4	69712	190921708	54822	0.0233	NEUTRAL	NA	733	Too-Many
TCGA.G4.6625	4	69712	190921708	54821	-0.1782	NEUTRAL	NA	733	Too-Many
TCGA.G5.6233	4	69712	190921708	54825	-0.0353	NEUTRAL	NA	733	Too-Many
TCGA.G5.6235	4	69712	190921708	54838	0.0085	NEUTRAL	NA	733	Too-Many
TCGA.G5.6572	4	69712	190921708	54701	-0.0056	NEUTRAL	NA	733	Too-Many
TCGA.G5.6641	4	69712	190921708	54684	-0.0855	NEUTRAL	NA	733	Too-Many
TCGA.NH.A50U	4	69712	190921708	54812	-0.4579	NEUTRAL	NA	733	Too-Many
TCGA.NH.A50V	4	69712	190921708	54481	0.0023	NEUTRAL	NA	733	Too-Many
TCGA.NH.A6GB	4	69712	190921708	54811	-0.0225	NEUTRAL	NA	733	Too-Many
TCGA.NH.A8F7	4	69712	190921708	54677	-0.0043	NEUTRAL	NA	733	Too-Many
TCGA.QG.A5YV	4	69712	190921708	54389	-0.344	NEUTRAL	NA	733	Too-Many
TCGA.QG.A5YW	4	69712	190921708	54477	-0.4217	NEUTRAL	NA	733	Too-Many
TCGA.QG.A5Z1	4	69712	190921708	54352	0.0065	NEUTRAL	NA	733	Too-Many
TCGA.QG.A5Z2	4	69712	190921708	54410	0.034	NEUTRAL	NA	733	Too-Many
TCGA.QL.A97D	4	69712	190921708	54823	-0.1559	NEUTRAL	NA	733	Too-Many
TCGA.SS.A7HO	4	69712	190921708	54818	-0.3794	NEUTRAL	NA	733	Too-Many
TCGA.WS.AB45	4	69712	190921708	54801	0.0058	NEUTRAL	NA	733	Too-Many
TCGA.AG.3742	4	74237	132237872	37331	-0.0064	NEUTRAL	NA	555	Too-Many
TCGA.A6.6653	4	94379	7431265	2274	-0.0686	NEUTRAL	NA	80	"ADD1,ADRA2C,ATP5I,BLOC1S4,C4orf48,CCDC96,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,GRPEL1,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,RGS12,RNF212,RNF4,S100P,SH3BP2,SLBP,SLC26A1,SORCS2,SPON2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF718,ZNF721,ZNF732"
TCGA.AA.A00N.01A	4	154715	493098	20	-0.0679	NEUTRAL	NA	5	"PIGG,ZNF141,ZNF718,ZNF721,ZNF732"
TCGA.AA.3872	4	193053	19798054	6954	-0.2324	NEUTRAL	NA	140	Too-Many
TCGA.DM.A28F	4	243555	1122633	118	0.3101	NEUTRAL	NA	17	"ATP5I,CPLX1,DGKQ,FGFRL1,GAK,IDUA,MFSD7,MYL5,PCGF3,PDE6B,PIGG,RNF212,SLC26A1,TMEM175,ZNF141,ZNF721,ZNF732"
TCGA.AA.A010.01A	4	264905	629627	33	0.1727	NEUTRAL	NA	5	"PDE6B,PIGG,ZNF141,ZNF721,ZNF732"
TCGA.A6.6142	4	329685	190921708	54773	-0.0549	NEUTRAL	NA	730	Too-Many
TCGA.AA.A00Q.01A	4	331688	466293	10	0.023	NEUTRAL	NA	2	"ZNF141,ZNF721"
TCGA.DM.A28M.01A	4	331688	17839211	1160	-0.1474	NEUTRAL	NA	138	Too-Many
TCGA.AG.4009.01A	4	435436	629627	22	0.0592	NEUTRAL	NA	3	"PDE6B,PIGG,ZNF721"
TCGA.AA.3844	4	445793	10182844	3053	0.1549	NEUTRAL	NA	112	Too-Many
TCGA.AA.A00K.01A	4	466293	1976974	193	-0.1432	NEUTRAL	NA	28	"ATP5I,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,GAK,IDUA,LETM1,MAEA,MFSD7,MYL5,NKX1-1,PCGF3,PDE6B,PIGG,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,WHSC1,ZNF721"
TCGA.AA.3509.01A	4	466293	17824569	1139	-0.1728	NEUTRAL	NA	137	Too-Many
TCGA.AA.A00L.01A	4	493098	941476	71	-0.3326	NEUTRAL	NA	9	"ATP5I,CPLX1,GAK,MFSD7,MYL5,PCGF3,PDE6B,PIGG,TMEM175"
TCGA.AA.A00D.01A	4	493098	5169985	398	-0.21	NEUTRAL	NA	59	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,CYTL1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28"
TCGA.AA.3861.01A	4	493098	38022164	1397	-0.2451	NEUTRAL	NA	167	Too-Many
TCGA.AA.A01Q.01A	4	509715	780271	42	-0.4281	NEUTRAL	NA	7	"ATP5I,CPLX1,MFSD7,MYL5,PCGF3,PDE6B,PIGG"
TCGA.AG.A015.01A	4	509715	189026256	6635	-0.1579	NEUTRAL	NA	726	Too-Many
TCGA.AG.A016.01A	4	524218	1725415	94	0.0628	NEUTRAL	NA	24	"ATP5I,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFRL1,GAK,IDUA,MAEA,MFSD7,MYL5,NKX1-1,PCGF3,PDE6B,PIGG,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA"
TCGA.AA.A00Q.01A	4	629627	667050	21	-0.1712	NEUTRAL	NA	2	"ATP5I,PDE6B"
TCGA.AG.A01W.01A	4	656200	668226	12	0.08	NEUTRAL	NA	2	"ATP5I,PDE6B"
TCGA.AG.A01L.01A	4	663769	190947494	6682	-0.1514	NEUTRAL	NA	728	Too-Many
TCGA.AA.A00Q.01A	4	667917	780271	9	0.3597	NEUTRAL	NA	5	"ATP5I,CPLX1,MFSD7,MYL5,PCGF3"
TCGA.AA.3939.01A	4	673666	1389721	129	-0.4826	NEUTRAL	NA	16	"CPLX1,CRIPAK,CTBP1,DGKQ,FGFRL1,GAK,IDUA,MAEA,MFSD7,MYL5,PCGF3,RNF212,SLC26A1,SPON2,TMEM175,UVSSA"
TCGA.AA.A02K.01A	4	679575	1800930	148	-0.2934	NEUTRAL	NA	21	"CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,GAK,IDUA,MAEA,MFSD7,NKX1-1,PCGF3,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA"
TCGA.AG.4009.01A	4	728679	941476	31	-0.181	NEUTRAL	NA	4	"CPLX1,GAK,PCGF3,TMEM175"
TCGA.AG.A01W.01A	4	745041	861393	17	-0.3672	NEUTRAL	NA	3	"CPLX1,GAK,PCGF3"
TCGA.AG.A01W.01A	4	865675	1008049	38	0.1507	NEUTRAL	NA	6	"DGKQ,FGFRL1,GAK,IDUA,SLC26A1,TMEM175"
TCGA.AA.A01Q.01A	4	941476	995205	33	-0.3625	NEUTRAL	NA	4	"DGKQ,IDUA,SLC26A1,TMEM175"
TCGA.AG.3909.01A	4	946931	2945753	227	-0.3633	NEUTRAL	NA	34	"ADD1,C4orf48,CFAP99,CRIPAK,CTBP1,DGKQ,FAM193A,FAM53A,FGFR3,FGFRL1,HAUS3,IDUA,LETM1,MAEA,MFSD10,MXD4,NAT8L,NELFA,NKX1-1,NOP14,POLN,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZFYVE28"
TCGA.AA.A00Q.01A	4	951592	1017381	18	0.2074	NEUTRAL	NA	5	"DGKQ,FGFRL1,IDUA,SLC26A1,TMEM175"
TCGA.AG.A00C.01A	4	951592	1976974	100	0.1292	NEUTRAL	NA	19	"CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,IDUA,LETM1,MAEA,NKX1-1,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,WHSC1"
TCGA.AA.A00L.01A	4	951592	1978155	132	-0.2824	NEUTRAL	NA	19	"CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,IDUA,LETM1,MAEA,NKX1-1,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,WHSC1"
TCGA.AA.A01Q.01A	4	995467	1107097	18	0.16	NEUTRAL	NA	3	"FGFRL1,IDUA,RNF212"
TCGA.AG.4009.01A	4	1018060	1343295	31	-0.2484	NEUTRAL	NA	6	"CTBP1,FGFRL1,MAEA,RNF212,SPON2,UVSSA"
TCGA.AF.3914.01A	4	1018696	1102065	9	-0.0611	NEUTRAL	NA	2	"FGFRL1,RNF212"
TCGA.AM.5820	4	1045170	1146669	41	0.1455	NEUTRAL	NA	1	RNF212
TCGA.AA.A010.01A	4	1066655	1165603	13	0.0207	NEUTRAL	NA	2	"RNF212,SPON2"
TCGA.AA.A00Q.01A	4	1066655	1725415	61	-0.27	NEUTRAL	NA	11	"CRIPAK,CTBP1,FAM53A,MAEA,NKX1-1,RNF212,SLBP,SPON2,TACC3,TMEM129,UVSSA"
TCGA.DM.A28F	4	1123999	41397003	13674	-0.0214	NEUTRAL	NA	177	Too-Many
TCGA.AG.A01W.01A	4	1151233	1628867	37	0.1991	NEUTRAL	NA	6	"CRIPAK,CTBP1,MAEA,NKX1-1,SPON2,UVSSA"
TCGA.EF.5830	4	1192242	1385148	47	0.3617	NEUTRAL	NA	4	"CTBP1,MAEA,SPON2,UVSSA"
TCGA.EF.5830	4	1386569	91966614	26838	-0.0382	NEUTRAL	NA	403	Too-Many
TCGA.AA.3870	4	1506969	1563919	8	-0.0537	NEUTRAL	NA	0	None
TCGA.AA.3939.01A	4	1642797	37357938	1273	-0.2384	NEUTRAL	NA	142	Too-Many
TCGA.AG.A01W.01A	4	1688685	1709082	12	-0.4342	NEUTRAL	NA	1	SLBP
TCGA.AG.A01W.01A	4	1711186	1797041	20	0.2694	NEUTRAL	NA	4	"FGFR3,SLBP,TACC3,TMEM129"
TCGA.AG.3906.01A	4	1719912	1746224	9	0.0865	NEUTRAL	NA	2	"TACC3,TMEM129"
TCGA.AA.A01Q.01A	4	1729398	1800944	11	0.1927	NEUTRAL	NA	2	"FGFR3,TACC3"
TCGA.AA.A00Q.01A	4	1729398	1808796	19	0.1364	NEUTRAL	NA	2	"FGFR3,TACC3"
TCGA.AG.4009.01A	4	1732551	1800944	9	-0.1686	NEUTRAL	NA	2	"FGFR3,TACC3"
TCGA.AA.A00J.01A	4	1736930	190884165	5425	-0.0484	NEUTRAL	NA	705	Too-Many
TCGA.CM.5864	4	1793282	190921708	54449	-0.0948	NEUTRAL	NA	704	Too-Many
TCGA.AG.A016.01A	4	1806047	1962711	33	-0.0742	NEUTRAL	NA	3	"FGFR3,LETM1,WHSC1"
TCGA.AA.A02K.01A	4	1807044	46930206	1683	-0.3743	NEUTRAL	NA	183	Too-Many
TCGA.AA.A00Q.01A	4	1816112	2946806	147	-0.3985	NEUTRAL	NA	17	"ADD1,C4orf48,CFAP99,FAM193A,HAUS3,LETM1,MFSD10,MXD4,NAT8L,NELFA,NOP14,POLN,RNF4,SH3BP2,TNIP2,WHSC1,ZFYVE28"
TCGA.AA.A024.01A	4	1827242	3219494	206	-0.0215	NEUTRAL	NA	19	"ADD1,C4orf48,CFAP99,FAM193A,GRK4,HAUS3,HTT,LETM1,MFSD10,MXD4,NAT8L,NELFA,NOP14,POLN,RNF4,SH3BP2,TNIP2,WHSC1,ZFYVE28"
TCGA.AM.5820	4	1828866	2009094	14	0.1398	NEUTRAL	NA	3	"LETM1,NELFA,WHSC1"
TCGA.AA.A00N.01A	4	1902365	1957428	14	0.2255	NEUTRAL	NA	1	WHSC1
TCGA.AG.4009.01A	4	1902365	1987459	25	-0.0245	NEUTRAL	NA	2	"NELFA,WHSC1"
TCGA.AA.A010.01A	4	1902365	2043637	32	0.2837	NEUTRAL	NA	2	"NELFA,WHSC1"
TCGA.AG.3906.01A	4	1902365	2749451	95	-0.0738	NEUTRAL	NA	12	"C4orf48,CFAP99,FAM193A,HAUS3,MXD4,NAT8L,NELFA,POLN,RNF4,TNIP2,WHSC1,ZFYVE28"
TCGA.AA.A01Q.01A	4	1902365	6955958	390	-0.2218	NEUTRAL	NA	46	"ADD1,ADRA2C,BLOC1S4,C4orf48,CFAP99,CRMP1,CYTL1,DOK7,EVC,EVC2,FAM193A,GRK4,HAUS3,HGFAC,HTT,JAKMIP1,KIAA0232,LRPAP1,LYAR,MAN2B2,MFSD10,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,NAT8L,NELFA,NOP14,NSG1,OTOP1,POLN,PPP2R2C,RGS12,RNF4,S100P,SH3BP2,STK32B,STX18,TBC1D14,TMEM128,TNIP2,WFS1,WHSC1,ZBTB49,ZFYVE28"
TCGA.AF.3914.01A	4	1944000	2743962	89	-0.174	NEUTRAL	NA	12	"C4orf48,CFAP99,FAM193A,HAUS3,MXD4,NAT8L,NELFA,POLN,RNF4,TNIP2,WHSC1,ZFYVE28"
TCGA.A6.3808.01A	4	1944000	2916564	127	-0.3284	NEUTRAL	NA	14	"ADD1,C4orf48,CFAP99,FAM193A,HAUS3,MXD4,NAT8L,NELFA,POLN,RNF4,SH3BP2,TNIP2,WHSC1,ZFYVE28"
TCGA.AA.A00N.01A	4	1957729	2130853	30	-0.4503	NEUTRAL	NA	5	"C4orf48,NAT8L,NELFA,POLN,WHSC1"
TCGA.AG.A00C.01A	4	1978155	2097533	14	-0.3025	NEUTRAL	NA	5	"C4orf48,NAT8L,NELFA,POLN,WHSC1"
TCGA.AG.4009.01A	4	1987808	2082628	10	-0.5066	NEUTRAL	NA	4	"C4orf48,NAT8L,NELFA,POLN"
TCGA.AA.A00L.01A	4	2010436	11370412	467	-0.2672	NEUTRAL	NA	86	"ABLIM2,ACOX3,ADD1,ADRA2C,AFAP1,BLOC1S4,C4orf48,CCDC96,CFAP99,CLNK,CPZ,CRMP1,CYTL1,DEFB131,DOK7,DRD5,EVC,EVC2,FAM193A,GPR78,GRK4,GRPEL1,HAUS3,HGFAC,HMX1,HTRA3,HTT,JAKMIP1,KIAA0232,LOC389199,LOC650293,LRPAP1,LYAR,MAN2B2,MFSD10,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,NAT8L,NELFA,NOP14,NSG1,OTOP1,POLN,PPP2R2C,PSAPL1,RGS12,RNF4,S100P,SH3BP2,SH3TC1,SLC2A9,SORCS2,STK32B,STX18,TADA2B,TBC1D14,TMEM128,TNIP2,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,WFS1,ZBTB49,ZFYVE28,ZNF518B"
TCGA.AG.A01W.01A	4	2052427	2222053	27	-0.2747	NEUTRAL	NA	2	"NAT8L,POLN"
TCGA.AA.A00K.01A	4	2065458	187201139	5377	-0.4574	NEUTRAL	NA	693	Too-Many
TCGA.AG.A016.01A	4	2082628	48494730	1568	-0.1224	NEUTRAL	NA	189	Too-Many
TCGA.AG.4009.01A	4	2083308	2233619	21	0.078	NEUTRAL	NA	2	"HAUS3,POLN"
TCGA.AA.A010.01A	4	2097533	2214714	17	0.3692	NEUTRAL	NA	1	POLN
TCGA.AM.5820	4	2106835	2236198	28	-0.0496	NEUTRAL	NA	2	"HAUS3,POLN"
TCGA.AG.A00C.01A	4	2129800	2214714	16	0.1299	NEUTRAL	NA	1	POLN
TCGA.AA.A00N.01A	4	2194893	2214714	4	0.3346	NEUTRAL	NA	1	POLN
TCGA.AG.4009.01A	4	2237959	2275751	10	-0.3422	NEUTRAL	NA	4	"HAUS3,MXD4,POLN,ZFYVE28"
TCGA.AA.A00N.01A	4	2252244	2515370	25	-0.2749	NEUTRAL	NA	4	"CFAP99,MXD4,RNF4,ZFYVE28"
TCGA.AG.A00C.01A	4	2252774	2935251	63	0.0222	NEUTRAL	NA	9	"ADD1,CFAP99,FAM193A,MFSD10,MXD4,RNF4,SH3BP2,TNIP2,ZFYVE28"
TCGA.AG.4009.01A	4	2306019	2746083	31	0.1352	NEUTRAL	NA	5	"CFAP99,FAM193A,RNF4,TNIP2,ZFYVE28"
TCGA.AG.A01W.01A	4	2325421	2886373	51	-0.238	NEUTRAL	NA	7	"ADD1,CFAP99,FAM193A,RNF4,SH3BP2,TNIP2,ZFYVE28"
TCGA.CK.5914.01A	4	2419965	2673808	16	0.3116	NEUTRAL	NA	4	"CFAP99,FAM193A,RNF4,ZFYVE28"
TCGA.AF.2693	4	2437289	55316723	16159	-0.0193	NEUTRAL	NA	202	Too-Many
TCGA.G4.6299	4	2458077	57142840	16749	-0.0264	NEUTRAL	NA	212	Too-Many
TCGA.AM.5820	4	2478520	3216814	160	0.064	NEUTRAL	NA	9	"ADD1,FAM193A,GRK4,HTT,MFSD10,NOP14,RNF4,SH3BP2,TNIP2"
TCGA.AA.A00N.01A	4	2717700	2935251	41	-0.2488	NEUTRAL	NA	5	"ADD1,FAM193A,MFSD10,SH3BP2,TNIP2"
TCGA.AA.A010.01A	4	2733462	2757700	7	-0.4585	NEUTRAL	NA	2	"FAM193A,TNIP2"
TCGA.CK.5914.01A	4	2877606	2927704	13	0.2185	NEUTRAL	NA	1	ADD1
TCGA.AA.A010.01A	4	2877606	2935251	20	-0.0232	NEUTRAL	NA	2	"ADD1,MFSD10"
TCGA.AG.3906.01A	4	2877606	3042254	51	-0.0732	NEUTRAL	NA	4	"ADD1,GRK4,MFSD10,NOP14"
TCGA.AG.4009.01A	4	2883588	2927704	11	-0.029	NEUTRAL	NA	1	ADD1
TCGA.CK.5914.01A	4	2928285	2935251	7	-0.5092	NEUTRAL	NA	2	"ADD1,MFSD10"
TCGA.AA.A00Z.01A	4	2935251	3144486	6	-0.282	NEUTRAL	NA	4	"GRK4,HTT,MFSD10,NOP14"
TCGA.A6.3808.01A	4	2943257	3415752	105	-0.2177	NEUTRAL	NA	5	"GRK4,HTT,MSANTD1,NOP14,RGS12"
TCGA.AF.3914.01A	4	2943257	174292352	6052	-0.188	NEUTRAL	NA	634	Too-Many
TCGA.AG.A00Y.01A	4	2943889	13593501	477	-0.2608	NEUTRAL	NA	76	"ABLIM2,ACOX3,ADRA2C,AFAP1,BLOC1S4,BOD1L1,CCDC96,CLNK,CPZ,CRMP1,CYTL1,DEFB131,DOK7,DRD5,EVC,EVC2,GPR78,GRK4,GRPEL1,HGFAC,HMX1,HS3ST1,HTRA3,HTT,JAKMIP1,KIAA0232,LOC389199,LOC650293,LRPAP1,LYAR,MAN2B2,MRFAP1,MRFAP1L1,MSANTD1,MSX1,NKX3-2,NOP14,NSG1,OTOP1,PPP2R2C,PSAPL1,RAB28,RGS12,S100P,SH3TC1,SLC2A9,SORCS2,STK32B,STX18,TADA2B,TBC1D14,TMEM128,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,WFS1,ZBTB49,ZNF518B"
TCGA.AG.A00C.01A	4	2964810	3039074	14	-0.1491	NEUTRAL	NA	2	"GRK4,NOP14"
TCGA.AA.A00N.01A	4	2964810	3042254	17	-0.3547	NEUTRAL	NA	2	"GRK4,NOP14"
TCGA.AG.4009.01A	4	2964810	3042254	16	0.0662	NEUTRAL	NA	2	"GRK4,NOP14"
TCGA.AA.A010.01A	4	2964810	3076504	18	0.3544	NEUTRAL	NA	3	"GRK4,HTT,NOP14"
TCGA.AG.3909.01A	4	2964810	3105500	19	-0.2965	NEUTRAL	NA	3	"GRK4,HTT,NOP14"
TCGA.AA.A00Q.01A	4	2964810	4207727	67	-0.2032	NEUTRAL	NA	10	"ADRA2C,DOK7,GRK4,HGFAC,HTT,LRPAP1,MSANTD1,NOP14,OTOP1,RGS12"
TCGA.AG.A01W.01A	4	3092737	3102771	7	0.1838	NEUTRAL	NA	1	HTT
TCGA.AG.A01W.01A	4	3103152	3211334	49	-0.372	NEUTRAL	NA	1	HTT
TCGA.AG.3909.01A	4	3107032	3208221	37	0.1706	NEUTRAL	NA	1	HTT
TCGA.AG.A00C.01A	4	3107032	3240538	59	-0.1353	NEUTRAL	NA	1	HTT
TCGA.AG.3906.01A	4	3107032	13610872	471	-0.0832	NEUTRAL	NA	74	"ABLIM2,ACOX3,ADRA2C,AFAP1,BLOC1S4,BOD1L1,CCDC96,CLNK,CPZ,CRMP1,CYTL1,DEFB131,DOK7,DRD5,EVC,EVC2,GPR78,GRPEL1,HGFAC,HMX1,HS3ST1,HTRA3,HTT,JAKMIP1,KIAA0232,LOC389199,LOC650293,LRPAP1,LYAR,MAN2B2,MRFAP1,MRFAP1L1,MSANTD1,MSX1,NKX3-2,NSG1,OTOP1,PPP2R2C,PSAPL1,RAB28,RGS12,S100P,SH3TC1,SLC2A9,SORCS2,STK32B,STX18,TADA2B,TBC1D14,TMEM128,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,WFS1,ZBTB49,ZNF518B"
TCGA.CK.5914.01A	4	3122918	3219494	42	0.0701	NEUTRAL	NA	1	HTT
TCGA.AA.A010.01A	4	3128983	3144486	11	-0.0627	NEUTRAL	NA	1	HTT
TCGA.AG.4009.01A	4	3128983	3236974	48	0.1202	NEUTRAL	NA	1	HTT
TCGA.AA.A00N.01A	4	3216785	3319429	23	-0.4484	NEUTRAL	NA	3	"HTT,MSANTD1,RGS12"
TCGA.AA.A010.01A	4	3216785	4214543	72	-0.4481	NEUTRAL	NA	8	"ADRA2C,DOK7,HGFAC,HTT,LRPAP1,MSANTD1,OTOP1,RGS12"
TCGA.AG.A01W.01A	4	3224726	4241405	39	0.0429	NEUTRAL	NA	9	"ADRA2C,DOK7,HGFAC,HTT,LRPAP1,MSANTD1,OTOP1,RGS12,TMEM128"
TCGA.AG.4009.01A	4	3237275	4247877	48	-0.2548	NEUTRAL	NA	9	"ADRA2C,DOK7,HGFAC,HTT,LRPAP1,MSANTD1,OTOP1,RGS12,TMEM128"
TCGA.AG.A00C.01A	4	3254885	3418603	11	0.3762	NEUTRAL	NA	2	"MSANTD1,RGS12"
TCGA.AM.5820	4	3266915	3350247	32	0.1252	NEUTRAL	NA	1	RGS12
TCGA.AG.3909.01A	4	3417705	4393150	50	-0.5038	NEUTRAL	NA	10	"ADRA2C,DOK7,HGFAC,LRPAP1,LYAR,NSG1,OTOP1,RGS12,TMEM128,ZBTB49"
TCGA.AG.A00C.01A	4	3419088	4204158	17	-0.1674	NEUTRAL	NA	6	"ADRA2C,DOK7,HGFAC,LRPAP1,OTOP1,RGS12"
TCGA.AA.A00N.01A	4	3432122	4228159	35	-0.3933	NEUTRAL	NA	6	"ADRA2C,DOK7,HGFAC,LRPAP1,OTOP1,RGS12"
TCGA.AA.A024.01A	4	3432122	152577347	5265	-0.013	NEUTRAL	NA	559	Too-Many
TCGA.AA.3930.01A	4	3521750	8206901	279	-0.4661	NEUTRAL	NA	33	"ABLIM2,ADRA2C,AFAP1,BLOC1S4,CCDC96,CRMP1,CYTL1,EVC,EVC2,GRPEL1,JAKMIP1,KIAA0232,LOC389199,LRPAP1,LYAR,MAN2B2,MRFAP1,MRFAP1L1,MSX1,NSG1,OTOP1,PPP2R2C,PSAPL1,S100P,SH3TC1,SORCS2,STK32B,STX18,TADA2B,TBC1D14,TMEM128,WFS1,ZBTB49"
TCGA.A6.5666	4	3715602	190921708	54067	-0.0114	NEUTRAL	NA	679	Too-Many
TCGA.AM.5820	4	4015442	5749261	812	0.1207	NEUTRAL	NA	11	"CYTL1,EVC,EVC2,LYAR,MSX1,NSG1,OTOP1,STK32B,STX18,TMEM128,ZBTB49"
TCGA.NH.A50T	4	4167132	181128687	50131	-0.2174	NEUTRAL	NA	640	Too-Many
TCGA.A6.6782	4	4201744	190921708	53850	-0.0961	NEUTRAL	NA	678	Too-Many
TCGA.AA.A00Q.01A	4	4214543	4239515	3	0.3782	NEUTRAL	NA	2	"OTOP1,TMEM128"
TCGA.AG.4009.01A	4	4249244	6642549	152	0.0966	NEUTRAL	NA	16	"CRMP1,CYTL1,EVC,EVC2,JAKMIP1,LYAR,MAN2B2,MRFAP1,MSX1,NSG1,PPP2R2C,STK32B,STX18,TMEM128,WFS1,ZBTB49"
TCGA.AG.A01W.01A	4	4249778	9709679	363	-0.3798	NEUTRAL	NA	57	"ABLIM2,ACOX3,AFAP1,BLOC1S4,CCDC96,CPZ,CRMP1,CYTL1,DEFB131,EVC,EVC2,GPR78,GRPEL1,HMX1,HTRA3,JAKMIP1,KIAA0232,LOC389199,LOC650293,LYAR,MAN2B2,MRFAP1,MRFAP1L1,MSX1,NSG1,PPP2R2C,PSAPL1,S100P,SH3TC1,SORCS2,STK32B,STX18,TADA2B,TBC1D14,TMEM128,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WFS1,ZBTB49"
TCGA.AA.A00N.01A	4	4249780	5053536	34	-0.4371	NEUTRAL	NA	8	"CYTL1,LYAR,MSX1,NSG1,STK32B,STX18,TMEM128,ZBTB49"
TCGA.A6.3808.01A	4	4249780	8029449	256	0.1506	NEUTRAL	NA	29	"ABLIM2,AFAP1,BLOC1S4,CCDC96,CRMP1,CYTL1,EVC,EVC2,GRPEL1,JAKMIP1,KIAA0232,LOC389199,LYAR,MAN2B2,MRFAP1,MRFAP1L1,MSX1,NSG1,PPP2R2C,PSAPL1,S100P,SORCS2,STK32B,STX18,TADA2B,TBC1D14,TMEM128,WFS1,ZBTB49"
TCGA.AG.A00C.01A	4	4283459	15591139	411	-0.0576	NEUTRAL	NA	68	"ABLIM2,ACOX3,AFAP1,BLOC1S4,BOD1L1,C1QTNF7,CC2D2A,CCDC96,CLNK,CPEB2,CPZ,CRMP1,CYTL1,DEFB131,DRD5,EVC,EVC2,GPR78,GRPEL1,HMX1,HS3ST1,HTRA3,JAKMIP1,KIAA0232,LOC389199,LOC650293,LYAR,MAN2B2,MRFAP1,MRFAP1L1,MSX1,NKX3-2,NSG1,PPP2R2C,PSAPL1,RAB28,S100P,SH3TC1,SLC2A9,SORCS2,STK32B,STX18,TADA2B,TBC1D14,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,WFS1,ZBTB49,ZNF518B"
TCGA.AA.3941	4	4285864	5129308	404	0.3041	NEUTRAL	NA	7	"CYTL1,LYAR,MSX1,NSG1,STK32B,STX18,ZBTB49"
TCGA.AG.3909.01A	4	4411252	6296720	111	-0.0153	NEUTRAL	NA	10	"CRMP1,CYTL1,EVC,EVC2,JAKMIP1,MSX1,NSG1,STK32B,STX18,WFS1"
TCGA.CK.5914.01A	4	4461057	5690872	40	0.0726	NEUTRAL	NA	5	"CYTL1,EVC2,MSX1,STK32B,STX18"
TCGA.AA.3982	4	4509753	4542345	16	-0.1691	NEUTRAL	NA	1	STX18
TCGA.EI.6508	4	4772795	4852866	51	-0.1099	NEUTRAL	NA	0	None
TCGA.AA.3982	4	5057310	5157122	59	-0.0196	NEUTRAL	NA	1	STK32B
TCGA.AA.3941	4	5138422	5157122	17	-0.4736	NEUTRAL	NA	1	STK32B
TCGA.AA.3982	4	5157261	5414130	130	0.2738	NEUTRAL	NA	1	STK32B
TCGA.AA.3941	4	5157261	5431197	141	0.2415	NEUTRAL	NA	1	STK32B
TCGA.A6.2675	4	5397430	16992027	4735	-0.2178	NEUTRAL	NA	71	"ABLIM2,ACOX3,AFAP1,BLOC1S4,BOD1L1,BST1,C1QTNF7,CC2D2A,CCDC96,CD38,CLNK,CPEB2,CPZ,CRMP1,DEFB131,DRD5,EVC,EVC2,FAM200B,FBXL5,FGFBP1,FGFBP2,GPR78,GRPEL1,HMX1,HS3ST1,HTRA3,JAKMIP1,KIAA0232,LDB2,LOC389199,LOC650293,MAN2B2,MRFAP1,MRFAP1L1,NKX3-2,PPP2R2C,PROM1,PSAPL1,RAB28,S100P,SH3TC1,SLC2A9,SORCS2,STK32B,TADA2B,TAPT1,TBC1D14,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,WFS1,ZNF518B"
TCGA.AA.3982	4	5414816	5434159	19	-0.0098	NEUTRAL	NA	1	STK32B
TCGA.AA.3979	4	5626646	49584108	14334	-0.0126	NEUTRAL	NA	164	Too-Many
TCGA.AA.3976	4	5626646	190921708	53349	-0.3243	NEUTRAL	NA	669	Too-Many
TCGA.AA.A00Z.01A	4	5633483	187628539	74	-0.3148	NEUTRAL	NA	665	Too-Many
TCGA.AA.A00D.01A	4	5687060	7787883	121	-0.3557	NEUTRAL	NA	19	"AFAP1,BLOC1S4,CCDC96,CRMP1,EVC,EVC2,GRPEL1,JAKMIP1,KIAA0232,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,PSAPL1,S100P,SORCS2,TADA2B,TBC1D14,WFS1"
TCGA.CK.5914.01A	4	5730976	5961070	34	-0.0283	NEUTRAL	NA	2	"CRMP1,EVC"
TCGA.AM.5820	4	5760543	6778551	466	0.2701	NEUTRAL	NA	10	"BLOC1S4,CRMP1,EVC,JAKMIP1,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,S100P,WFS1"
TCGA.AA.A010.01A	4	5851060	5894339	7	-0.503	NEUTRAL	NA	1	CRMP1
TCGA.AA.A00N.01A	4	5990009	6580083	41	-0.2444	NEUTRAL	NA	4	"JAKMIP1,MAN2B2,PPP2R2C,WFS1"
TCGA.AZ.4614	4	6106820	12107142	2321	0.1544	NEUTRAL	NA	52	"ABLIM2,ACOX3,AFAP1,BLOC1S4,CCDC96,CLNK,CPZ,DEFB131,DRD5,GPR78,GRPEL1,HMX1,HS3ST1,HTRA3,JAKMIP1,KIAA0232,LOC389199,LOC650293,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,PSAPL1,S100P,SH3TC1,SLC2A9,SORCS2,TADA2B,TBC1D14,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,WFS1,ZNF518B"
TCGA.AA.A00Q.01A	4	6279132	6296720	6	0.0779	NEUTRAL	NA	1	WFS1
TCGA.AA.A010.01A	4	6279132	7016125	61	-0.376	NEUTRAL	NA	9	"BLOC1S4,KIAA0232,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,S100P,TBC1D14,WFS1"
TCGA.AG.3909.01A	4	6302347	9452039	177	-0.4394	NEUTRAL	NA	45	"ABLIM2,ACOX3,AFAP1,BLOC1S4,CCDC96,CPZ,DEFB131,GPR78,GRPEL1,HMX1,HTRA3,KIAA0232,LOC389199,LOC650293,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,PSAPL1,S100P,SH3TC1,SORCS2,TADA2B,TBC1D14,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WFS1"
TCGA.AA.3864	4	6483243	190921708	52752	-0.0662	NEUTRAL	NA	664	Too-Many
TCGA.AG.3611.01A	4	6594878	48834571	994	-0.4205	NEUTRAL	NA	156	Too-Many
TCGA.AA.A01K.01A	4	6594878	52740420	1285	-0.3164	NEUTRAL	NA	159	Too-Many
TCGA.AM.5820	4	6803126	6859938	12	-0.4261	NEUTRAL	NA	1	KIAA0232
TCGA.AA.3952	4	6854059	27057142	7436	0.3785	NEUTRAL	NA	88	"ABLIM2,ACOX3,ADGRA3,AFAP1,ANAPC4,BOD1L1,BST1,C1QTNF7,CC2D2A,CCDC149,CCDC96,CCKAR,CD38,CLNK,CLRN2,CPEB2,CPZ,DCAF16,DEFB131,DHX15,DRD5,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,GBA3,GPR78,GRPEL1,HMX1,HS3ST1,HTRA3,KCNIP4,KIAA0232,LAP3,LCORL,LDB2,LGI2,LOC389199,LOC650293,MED28,NCAPG,NKX3-2,PACRGL,PI4K2B,PPARGC1A,PROM1,PSAPL1,QDPR,RAB28,RBPJ,SEL1L3,SEPSECS,SH3TC1,SLC2A9,SLC34A2,SLIT2,SMIM20,SOD3,SORCS2,STIM2,TADA2B,TAPT1,TBC1D14,TBC1D19,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,ZCCHC4,ZNF518B"
TCGA.AG.4009.01A	4	6858828	7065771	26	-0.3494	NEUTRAL	NA	5	"CCDC96,GRPEL1,KIAA0232,TADA2B,TBC1D14"
TCGA.AM.5820	4	6860365	7102596	85	0.0548	NEUTRAL	NA	5	"CCDC96,GRPEL1,KIAA0232,TADA2B,TBC1D14"
TCGA.AG.A032.01A	4	7062557	190947494	6114	-0.1022	NEUTRAL	NA	655	Too-Many
TCGA.AA.A00N.01A	4	7069641	7774528	32	-0.0985	NEUTRAL	NA	4	"AFAP1,GRPEL1,PSAPL1,SORCS2"
TCGA.AA.A010.01A	4	7069641	8242377	85	0.1616	NEUTRAL	NA	7	"ABLIM2,AFAP1,GRPEL1,LOC389199,PSAPL1,SH3TC1,SORCS2"
TCGA.AG.4009.01A	4	7069641	10586479	150	0.1203	NEUTRAL	NA	39	"ABLIM2,ACOX3,AFAP1,CLNK,CPZ,DEFB131,DRD5,GPR78,GRPEL1,HMX1,HTRA3,LOC389199,LOC650293,PSAPL1,SH3TC1,SLC2A9,SORCS2,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,ZNF518B"
TCGA.AA.A01Q.01A	4	7397952	8214376	31	-0.164	NEUTRAL	NA	6	"ABLIM2,AFAP1,LOC389199,PSAPL1,SH3TC1,SORCS2"
TCGA.A6.6653	4	7473204	171659812	46021	0.0012	NEUTRAL	NA	595	Too-Many
TCGA.AM.5820	4	7546372	7637688	59	0.3082	NEUTRAL	NA	1	SORCS2
TCGA.AY.A71X	4	7628405	77724764	20417	0.0274	NEUTRAL	NA	275	Too-Many
TCGA.QG.A5YX	4	7700711	93994596	24855	0.0326	NEUTRAL	NA	346	Too-Many
TCGA.AM.5820	4	7760242	7960789	68	0.0467	NEUTRAL	NA	2	"AFAP1,LOC389199"
TCGA.AA.A00Q.01A	4	7765429	13370131	98	-0.4909	NEUTRAL	NA	38	"ABLIM2,ACOX3,AFAP1,CLNK,CPZ,DEFB131,DRD5,GPR78,HMX1,HS3ST1,HTRA3,LOC389199,LOC650293,RAB28,SH3TC1,SLC2A9,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,ZNF518B"
TCGA.AA.A00F.01A	4	7802127	7870307	8	-0.4476	NEUTRAL	NA	1	AFAP1
TCGA.AA.A00D.01A	4	7873627	8620968	60	-0.2093	NEUTRAL	NA	9	"ABLIM2,ACOX3,AFAP1,CPZ,GPR78,HTRA3,LOC389199,SH3TC1,TRMT44"
TCGA.AA.A00F.01A	4	7873627	9783657	62	-0.0368	NEUTRAL	NA	32	"ABLIM2,ACOX3,AFAP1,CPZ,DEFB131,DRD5,GPR78,HMX1,HTRA3,LOC389199,LOC650293,SH3TC1,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5"
TCGA.AA.A00N.01A	4	7873627	9783657	91	-0.4568	NEUTRAL	NA	32	"ABLIM2,ACOX3,AFAP1,CPZ,DEFB131,DRD5,GPR78,HMX1,HTRA3,LOC389199,LOC650293,SH3TC1,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5"
TCGA.AM.5820	4	7962855	8021150	25	0.3263	NEUTRAL	NA	1	ABLIM2
TCGA.AA.3558	4	8142671	190921708	52214	-0.0025	NEUTRAL	NA	649	Too-Many
TCGA.AA.A010.01A	4	8304118	10090229	69	0.2116	NEUTRAL	NA	30	"ACOX3,CPZ,DEFB131,DRD5,GPR78,HMX1,HTRA3,LOC650293,SLC2A9,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1"
TCGA.D5.6530	4	8606079	190921708	52036	0.0378	NEUTRAL	NA	643	Too-Many
TCGA.AM.5820	4	8715987	9407240	15	0.0529	NEUTRAL	NA	21	"HMX1,LOC650293,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5"
TCGA.A6.2683	4	9372302	91025849	24032	-0.4514	NEUTRAL	NA	313	Too-Many
TCGA.AA.3977	4	9381817	9451922	14	-0.3766	NEUTRAL	NA	1	DEFB131
TCGA.AA.3982	4	9392279	11471258	949	0.1782	NEUTRAL	NA	7	"CLNK,DEFB131,DRD5,HS3ST1,SLC2A9,WDR1,ZNF518B"
TCGA.AM.5820	4	9451922	10406993	412	0.3643	NEUTRAL	NA	4	"DEFB131,DRD5,SLC2A9,WDR1"
TCGA.AA.3977	4	9456976	187917029	50999	-0.0609	NEUTRAL	NA	616	Too-Many
TCGA.AG.3909.01A	4	9485493	15597658	128	0.0229	NEUTRAL	NA	12	"BOD1L1,C1QTNF7,CC2D2A,CLNK,CPEB2,DRD5,HS3ST1,NKX3-2,RAB28,SLC2A9,WDR1,ZNF518B"
TCGA.AA.A02E.01A	4	9557762	56435847	1351	-0.2269	NEUTRAL	NA	134	Too-Many
TCGA.AG.A01N.01A	4	9557762	183651981	5725	-0.077	NEUTRAL	NA	583	Too-Many
TCGA.A6.2686	4	9767179	46691119	12376	-0.3815	NEUTRAL	NA	97	"ADGRA3,ANAPC4,APBB2,ARAP2,ATP8A1,BEND4,BOD1L1,BST1,C1QTNF7,C4orf19,CC2D2A,CCDC149,CCKAR,CD38,CHRNA9,CLNK,CLRN2,CPEB2,DCAF16,DCAF4L1,DHX15,DRD5,DTHD1,FAM114A1,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,GABRA2,GABRG1,GBA3,GNPDA2,GRXCR1,GUF1,HS3ST1,KCNIP4,KCTD8,KLB,KLF3,KLHL5,LAP3,LCORL,LDB2,LGI2,LIAS,LIMCH1,MED28,N4BP2,NCAPG,NKX3-2,NSUN7,NWD2,PACRGL,PCDH7,PDS5A,PGM2,PHOX2B,PI4K2B,PPARGC1A,PROM1,PTTG2,QDPR,RAB28,RBM47,RBPJ,RELL1,RFC1,RHOH,RPL9,SEL1L3,SEPSECS,SHISA3,SLC2A9,SLC30A9,SLC34A2,SLIT2,SMIM14,SMIM20,SOD3,STIM2,TAPT1,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR1,WDR19,YIPF7,ZCCHC4,ZNF518B"
TCGA.AA.A01Q.01A	4	9783657	38990419	488	-0.0021	NEUTRAL	NA	65	"ADGRA3,ANAPC4,ARAP2,BOD1L1,BST1,C1QTNF7,C4orf19,CC2D2A,CCDC149,CCKAR,CD38,CLNK,CLRN2,CPEB2,DCAF16,DHX15,DRD5,DTHD1,FAM114A1,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,GBA3,HS3ST1,KCNIP4,KLF3,LAP3,LCORL,LDB2,LGI2,MED28,NCAPG,NKX3-2,NWD2,PACRGL,PCDH7,PGM2,PI4K2B,PPARGC1A,PROM1,PTTG2,QDPR,RAB28,RBPJ,RELL1,SEL1L3,SEPSECS,SLC2A9,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TAPT1,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,WDR1,ZCCHC4,ZNF518B"
TCGA.AA.A00N.01A	4	9987261	13610102	71	0.0622	NEUTRAL	NA	8	"BOD1L1,CLNK,HS3ST1,NKX3-2,RAB28,SLC2A9,WDR1,ZNF518B"
TCGA.AA.A00F.01A	4	9998353	10447271	6	-0.0073	NEUTRAL	NA	3	"SLC2A9,WDR1,ZNF518B"
TCGA.A6.5665	4	10134116	190921708	51611	0.107	NEUTRAL	NA	617	Too-Many
TCGA.AG.A01W.01A	4	10138717	15165747	82	-0.206	NEUTRAL	NA	7	"BOD1L1,CLNK,CPEB2,HS3ST1,NKX3-2,RAB28,ZNF518B"
TCGA.AA.3844	4	10182868	10210389	28	-0.1254	NEUTRAL	NA	0	None
TCGA.AA.3941	4	10250025	10305462	64	0.0721	NEUTRAL	NA	0	None
TCGA.AA.3844	4	10250025	10986737	371	-0.0895	NEUTRAL	NA	2	"CLNK,ZNF518B"
TCGA.A6.5661	4	10276351	190921708	51489	0.1119	NEUTRAL	NA	617	Too-Many
TCGA.AA.3858	4	10276351	190921708	51669	-0.1131	NEUTRAL	NA	617	Too-Many
TCGA.A6.2672	4	10283052	190921708	51417	0.1138	NEUTRAL	NA	617	Too-Many
TCGA.D5.6923	4	10383004	59317368	14642	-0.0105	NEUTRAL	NA	147	Too-Many
TCGA.AA.3941	4	10406993	10642735	98	0.358	NEUTRAL	NA	2	"CLNK,ZNF518B"
TCGA.F5.6814	4	10406993	179539752	47285	-0.0475	NEUTRAL	NA	579	Too-Many
TCGA.AM.5820	4	10407533	190921708	51512	-0.04	NEUTRAL	NA	617	Too-Many
TCGA.AA.A010.01A	4	10492049	13545556	30	0.1999	NEUTRAL	NA	4	"CLNK,HS3ST1,NKX3-2,RAB28"
TCGA.AG.A025.01A	4	10509522	183675508	5712	0.0401	NEUTRAL	NA	579	Too-Many
TCGA.CK.5914.01A	4	10522364	13610872	47	0.1653	NEUTRAL	NA	5	"BOD1L1,CLNK,HS3ST1,NKX3-2,RAB28"
TCGA.AA.A02H.01A	4	10522364	54879944	1227	-0.2543	NEUTRAL	NA	122	Too-Many
TCGA.AA.A00O.01A	4	10527408	190947494	5984	0.0575	NEUTRAL	NA	617	Too-Many
TCGA.AA.A00F.01A	4	10542070	13597445	25	-0.3124	NEUTRAL	NA	5	"BOD1L1,CLNK,HS3ST1,NKX3-2,RAB28"
TCGA.AA.A029.01A	4	10566243	183672913	5657	-0.0691	NEUTRAL	NA	579	Too-Many
TCGA.AG.4009.01A	4	10599559	13616899	36	-0.3029	NEUTRAL	NA	5	"BOD1L1,CLNK,HS3ST1,NKX3-2,RAB28"
TCGA.AA.3941	4	10645340	10728672	60	-0.0282	NEUTRAL	NA	1	CLNK
TCGA.AA.3811	4	10689343	18381480	3195	-0.1737	NEUTRAL	NA	24	"BOD1L1,BST1,C1QTNF7,CC2D2A,CD38,CLRN2,CPEB2,DCAF16,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,HS3ST1,LAP3,LCORL,LDB2,MED28,NCAPG,NKX3-2,PROM1,QDPR,RAB28,TAPT1"
TCGA.AA.3850	4	10699155	15079532	1892	-0.46965	NEUTRAL	NA	5	"BOD1L1,CPEB2,HS3ST1,NKX3-2,RAB28"
TCGA.AA.3941	4	10749700	11140148	189	-0.0155	NEUTRAL	NA	0	None
TCGA.AA.3844	4	10992391	15743572	1991	-0.3064	NEUTRAL	NA	10	"BOD1L1,BST1,C1QTNF7,CC2D2A,CPEB2,FAM200B,FBXL5,HS3ST1,NKX3-2,RAB28"
TCGA.AA.3941	4	11175751	11672829	262	-0.0167	NEUTRAL	NA	1	HS3ST1
TCGA.AA.3982	4	11474623	15112645	1523	-0.2001	NEUTRAL	NA	4	"BOD1L1,CPEB2,NKX3-2,RAB28"
TCGA.CM.5862	4	11493325	26892855	5638	0.2424	NEUTRAL	NA	44	"ADGRA3,ANAPC4,BOD1L1,BST1,C1QTNF7,CC2D2A,CCDC149,CCKAR,CD38,CLRN2,CPEB2,DCAF16,DHX15,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,GBA3,KCNIP4,LAP3,LCORL,LDB2,LGI2,MED28,NCAPG,NKX3-2,PACRGL,PI4K2B,PPARGC1A,PROM1,QDPR,RAB28,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TAPT1,TBC1D19,ZCCHC4"
TCGA.AA.3941	4	11739779	12305328	201	-0.4113	NEUTRAL	NA	0	None
TCGA.RU.A8FL	4	11996406	15085128	1247	0.1884	NEUTRAL	NA	4	"BOD1L1,CPEB2,NKX3-2,RAB28"
TCGA.AF.6672	4	12261032	12596192	92	0.2756	NEUTRAL	NA	0	None
TCGA.AA.3989	4	12355206	114301964	28720	-0.0535	NEUTRAL	NA	388	Too-Many
TCGA.AA.3664	4	12436818	152665523	38540	-0.0054	NEUTRAL	NA	491	Too-Many
TCGA.AA.3941	4	12549769	14273806	723	-0.2993	NEUTRAL	NA	3	"BOD1L1,NKX3-2,RAB28"
TCGA.AF.6672	4	12605377	12607337	4	-0.4776	NEUTRAL	NA	0	None
TCGA.AF.6672	4	12608561	12745133	57	0.2351	NEUTRAL	NA	0	None
TCGA.AF.6672	4	12745888	16156489	1457	-1.00E-04	NEUTRAL	NA	13	"BOD1L1,BST1,C1QTNF7,CC2D2A,CD38,CPEB2,FAM200B,FBXL5,FGFBP1,FGFBP2,NKX3-2,PROM1,RAB28"
TCGA.AG.3885	4	13374229	27886843	5261	-0.045	NEUTRAL	NA	44	"ADGRA3,ANAPC4,BOD1L1,BST1,C1QTNF7,CC2D2A,CCDC149,CCKAR,CD38,CLRN2,CPEB2,DCAF16,DHX15,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,GBA3,KCNIP4,LAP3,LCORL,LDB2,LGI2,MED28,NCAPG,NKX3-2,PACRGL,PI4K2B,PPARGC1A,PROM1,QDPR,RAB28,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TAPT1,TBC1D19,ZCCHC4"
TCGA.AA.A00F.01A	4	13598662	15018761	17	-0.0516	NEUTRAL	NA	2	"BOD1L1,CPEB2"
TCGA.AG.3605.01A	4	13601403	190904431	86	-0.3328	NEUTRAL	NA	612	Too-Many
TCGA.AA.A00D.01A	4	13628928	15018761	4	-0.0964	NEUTRAL	NA	2	"BOD1L1,CPEB2"
TCGA.A6.3808.01A	4	13628928	17625176	157	-0.1526	NEUTRAL	NA	17	"BOD1L1,BST1,C1QTNF7,CC2D2A,CD38,CLRN2,CPEB2,FAM200B,FBXL5,FGFBP1,FGFBP2,LAP3,LDB2,MED28,PROM1,QDPR,TAPT1"
TCGA.F5.6465	4	14008298	190921708	50067	0.011	NEUTRAL	NA	611	Too-Many
TCGA.AA.3941	4	14285885	15112877	389	-0.4442	NEUTRAL	NA	1	CPEB2
TCGA.AZ.4614	4	14808201	21984277	2545	0.1502	NEUTRAL	NA	23	"BST1,C1QTNF7,CC2D2A,CD38,CLRN2,CPEB2,DCAF16,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,KCNIP4,LAP3,LCORL,LDB2,MED28,NCAPG,PACRGL,PROM1,QDPR,SLIT2,TAPT1"
TCGA.AG.3906.01A	4	15009908	15841595	71	-0.0134	NEUTRAL	NA	7	"BST1,C1QTNF7,CC2D2A,CD38,CPEB2,FAM200B,FBXL5"
TCGA.AG.4009.01A	4	15018761	15568953	34	0.0458	NEUTRAL	NA	3	"C1QTNF7,CC2D2A,CPEB2"
TCGA.AA.A00F.01A	4	15034724	15443745	9	-0.4762	NEUTRAL	NA	2	"C1QTNF7,CPEB2"
TCGA.AA.A010.01A	4	15034724	15512819	17	0.0196	NEUTRAL	NA	3	"C1QTNF7,CC2D2A,CPEB2"
TCGA.CK.5914.01A	4	15034724	15607283	47	0.2711	NEUTRAL	NA	4	"C1QTNF7,CC2D2A,CPEB2,FBXL5"
TCGA.AA.A00Q.01A	4	15055710	17625176	74	-0.4702	NEUTRAL	NA	16	"BST1,C1QTNF7,CC2D2A,CD38,CLRN2,CPEB2,FAM200B,FBXL5,FGFBP1,FGFBP2,LAP3,LDB2,MED28,PROM1,QDPR,TAPT1"
TCGA.AA.A00L.01A	4	15055710	27009999	329	-0.513	NEUTRAL	NA	41	"ADGRA3,ANAPC4,BST1,C1QTNF7,CC2D2A,CCDC149,CCKAR,CD38,CLRN2,CPEB2,DCAF16,DHX15,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,GBA3,KCNIP4,LAP3,LCORL,LDB2,LGI2,MED28,NCAPG,PACRGL,PI4K2B,PPARGC1A,PROM1,QDPR,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TAPT1,TBC1D19,ZCCHC4"
TCGA.AA.3850	4	15081373	17818884	1159	-0.01875	NEUTRAL	NA	18	"BST1,C1QTNF7,CC2D2A,CD38,CLRN2,DCAF16,FAM184B,FAM200B,FBXL5,FGFBP1,FGFBP2,LAP3,LDB2,MED28,NCAPG,PROM1,QDPR,TAPT1"
TCGA.AA.3982	4	15112877	16476936	545	0.1209	NEUTRAL	NA	10	"BST1,C1QTNF7,CC2D2A,CD38,FAM200B,FBXL5,FGFBP1,FGFBP2,PROM1,TAPT1"
TCGA.AA.3941	4	15113641	15812456	238	-0.0144	NEUTRAL	NA	6	"BST1,C1QTNF7,CC2D2A,CD38,FAM200B,FBXL5"
TCGA.AG.A01W.01A	4	15178052	15241340	20	-0.0887	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	4	15247199	17303976	112	-0.4387	NEUTRAL	NA	11	"BST1,C1QTNF7,CC2D2A,CD38,FAM200B,FBXL5,FGFBP1,FGFBP2,LDB2,PROM1,TAPT1"
TCGA.AA.A00D.01A	4	15437311	15724427	22	-0.1536	NEUTRAL	NA	5	"BST1,C1QTNF7,CC2D2A,FAM200B,FBXL5"
TCGA.AA.A010.01A	4	15538514	15626873	26	-0.1279	NEUTRAL	NA	2	"CC2D2A,FBXL5"
TCGA.AG.4009.01A	4	15569269	15688571	21	-0.3103	NEUTRAL	NA	3	"CC2D2A,FAM200B,FBXL5"
TCGA.AG.A00C.01A	4	15597658	15717297	21	0.3314	NEUTRAL	NA	4	"BST1,CC2D2A,FAM200B,FBXL5"
TCGA.AA.A00F.01A	4	15607283	15717297	17	0.0687	NEUTRAL	NA	3	"BST1,FAM200B,FBXL5"
TCGA.AG.4009.01A	4	15706479	16175765	47	0.1166	NEUTRAL	NA	6	"BST1,CD38,FGFBP1,FGFBP2,PROM1,TAPT1"
TCGA.AG.3909.01A	4	15720482	17503312	64	0.0417	NEUTRAL	NA	8	"BST1,CD38,FGFBP1,FGFBP2,LDB2,PROM1,QDPR,TAPT1"
TCGA.AA.A00F.01A	4	15720482	17625176	48	-0.2808	NEUTRAL	NA	11	"BST1,CD38,CLRN2,FGFBP1,FGFBP2,LAP3,LDB2,MED28,PROM1,QDPR,TAPT1"
TCGA.AG.A00C.01A	4	15720482	39318483	529	-0.0849	NEUTRAL	NA	54	"ADGRA3,ANAPC4,ARAP2,BST1,C4orf19,CCDC149,CCKAR,CD38,CLRN2,DCAF16,DHX15,DTHD1,FAM114A1,FAM184B,FGFBP1,FGFBP2,GBA3,KCNIP4,KLF3,KLHL5,LAP3,LCORL,LDB2,LGI2,MED28,NCAPG,NWD2,PACRGL,PCDH7,PGM2,PI4K2B,PPARGC1A,PROM1,PTTG2,QDPR,RBPJ,RELL1,RFC1,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TAPT1,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,WDR19,ZCCHC4"
TCGA.CK.5914.01A	4	15733315	16215354	50	0.106	NEUTRAL	NA	6	"BST1,CD38,FGFBP1,FGFBP2,PROM1,TAPT1"
TCGA.AA.3844	4	15755098	16476936	332	-0.0709	NEUTRAL	NA	5	"CD38,FGFBP1,FGFBP2,PROM1,TAPT1"
TCGA.AA.3941	4	15813722	16151690	181	0.3272	NEUTRAL	NA	4	"CD38,FGFBP1,FGFBP2,PROM1"
TCGA.AG.3906.01A	4	15842021	16002082	17	0.3127	NEUTRAL	NA	4	"CD38,FGFBP1,FGFBP2,PROM1"
TCGA.AG.3906.01A	4	16008111	25005026	198	-0.0913	NEUTRAL	NA	21	"ADGRA3,CCDC149,CLRN2,DCAF16,DHX15,FAM184B,GBA3,KCNIP4,LAP3,LCORL,LDB2,LGI2,MED28,NCAPG,PACRGL,PPARGC1A,PROM1,QDPR,SLIT2,SOD3,TAPT1"
TCGA.A6.2671	4	16022539	16755924	318	-0.0545	NEUTRAL	NA	3	"LDB2,PROM1,TAPT1"
TCGA.AA.3855	4	16145587	190921708	49048	0.0173	NEUTRAL	NA	601	Too-Many
TCGA.AA.3941	4	16154005	16471250	124	-0.1482	NEUTRAL	NA	1	TAPT1
TCGA.AF.6672	4	16160665	17027947	341	0.3021	NEUTRAL	NA	2	"LDB2,TAPT1"
TCGA.AA.A010.01A	4	16175765	16192957	8	-0.1242	NEUTRAL	NA	1	TAPT1
TCGA.AG.4009.01A	4	16189791	17493806	15	-0.0384	NEUTRAL	NA	3	"LDB2,QDPR,TAPT1"
TCGA.AA.3941	4	16478275	16705161	95	-0.1153	NEUTRAL	NA	1	LDB2
TCGA.AA.3982	4	16478291	16713074	98	-0.0143	NEUTRAL	NA	1	LDB2
TCGA.AA.3844	4	16478291	22952699	2187	-0.3122	NEUTRAL	NA	14	"ADGRA3,CLRN2,DCAF16,FAM184B,GBA3,KCNIP4,LAP3,LCORL,LDB2,MED28,NCAPG,PACRGL,QDPR,SLIT2"
TCGA.CK.5914.01A	4	16513564	17694886	45	0.017	NEUTRAL	NA	6	"CLRN2,FAM184B,LAP3,LDB2,MED28,QDPR"
TCGA.RU.A8FL	4	16535470	17072549	217	0.2135	NEUTRAL	NA	1	LDB2
TCGA.AA.3532	4	16546886	152789785	36821	-0.2504	NEUTRAL	NA	477	Too-Many
TCGA.AA.3982	4	16733512	17231714	229	0.0957	NEUTRAL	NA	1	LDB2
TCGA.AA.3941	4	16733512	17371158	311	0.0558	NEUTRAL	NA	1	LDB2
TCGA.A6.4105	4	16961633	190921708	48768	-0.0448	NEUTRAL	NA	599	Too-Many
TCGA.A6.2675	4	16992875	19326716	815	0.2156	NEUTRAL	NA	8	"CLRN2,DCAF16,FAM184B,LAP3,LCORL,MED28,NCAPG,QDPR"
TCGA.AF.6672	4	17030402	17884985	384	0.0065	NEUTRAL	NA	8	"CLRN2,DCAF16,FAM184B,LAP3,LCORL,MED28,NCAPG,QDPR"
TCGA.AA.3982	4	17254449	17809844	247	0.2349	NEUTRAL	NA	6	"CLRN2,DCAF16,FAM184B,LAP3,MED28,QDPR"
TCGA.A6.6140	4	17290741	54559579	10059	-0.0876	NEUTRAL	NA	104	Too-Many
TCGA.AG.A01W.01A	4	17315679	24194984	139	-0.1592	NEUTRAL	NA	14	"ADGRA3,CLRN2,DCAF16,FAM184B,GBA3,KCNIP4,LAP3,LCORL,MED28,NCAPG,PACRGL,PPARGC1A,QDPR,SLIT2"
TCGA.AA.3941	4	17378735	17818884	162	0.264	NEUTRAL	NA	7	"CLRN2,DCAF16,FAM184B,LAP3,MED28,NCAPG,QDPR"
TCGA.AY.A54L.01A	4	17488725	17608983	23	-0.0951	NEUTRAL	NA	3	"CLRN2,LAP3,QDPR"
TCGA.AA.A00D.01A	4	17503312	17885306	49	-0.1367	NEUTRAL	NA	8	"CLRN2,DCAF16,FAM184B,LAP3,LCORL,MED28,NCAPG,QDPR"
TCGA.AA.A010.01A	4	17579040	20760379	112	0.1692	NEUTRAL	NA	9	"DCAF16,FAM184B,KCNIP4,LAP3,LCORL,MED28,NCAPG,PACRGL,SLIT2"
TCGA.AG.4009.01A	4	17581430	25160528	170	-0.1038	NEUTRAL	NA	17	"ADGRA3,CCDC149,DCAF16,DHX15,FAM184B,GBA3,KCNIP4,LAP3,LCORL,LGI2,MED28,NCAPG,PACRGL,PPARGC1A,SEPSECS,SLIT2,SOD3"
TCGA.AG.3909.01A	4	17600027	17710468	11	0.0324	NEUTRAL	NA	3	"FAM184B,LAP3,MED28"
TCGA.AA.A00F.01A	4	17635280	17832572	15	0.0552	NEUTRAL	NA	3	"DCAF16,FAM184B,NCAPG"
TCGA.AA.A00N.01A	4	17638099	17812654	16	0.3012	NEUTRAL	NA	3	"DCAF16,FAM184B,NCAPG"
TCGA.AZ.4684.01A	4	17709222	17835875	18	-0.0154	NEUTRAL	NA	3	"DCAF16,FAM184B,NCAPG"
TCGA.AA.3982	4	17815888	24187950	2021	-0.2243	NEUTRAL	NA	8	"ADGRA3,GBA3,KCNIP4,LCORL,NCAPG,PACRGL,PPARGC1A,SLIT2"
TCGA.AG.A023.01A	4	17825243	24543455	113	0.2653	NEUTRAL	NA	9	"ADGRA3,DHX15,GBA3,KCNIP4,LCORL,NCAPG,PACRGL,PPARGC1A,SLIT2"
TCGA.AA.3941	4	17826255	24125605	1989	-0.5037	NEUTRAL	NA	8	"ADGRA3,GBA3,KCNIP4,LCORL,NCAPG,PACRGL,PPARGC1A,SLIT2"
TCGA.AG.3909.01A	4	17826539	20270412	23	-0.4785	NEUTRAL	NA	3	"LCORL,NCAPG,SLIT2"
TCGA.CK.5914.01A	4	17826539	30921728	287	0.059	NEUTRAL	NA	24	"ADGRA3,ANAPC4,CCDC149,CCKAR,DHX15,GBA3,KCNIP4,LCORL,LGI2,NCAPG,PACRGL,PCDH7,PI4K2B,PPARGC1A,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.AA.A00F.01A	4	17835875	25005026	121	-0.3879	NEUTRAL	NA	12	"ADGRA3,CCDC149,DHX15,GBA3,KCNIP4,LCORL,LGI2,NCAPG,PACRGL,PPARGC1A,SLIT2,SOD3"
TCGA.AA.A00N.01A	4	17839211	20255402	14	0.2659	NEUTRAL	NA	3	"LCORL,NCAPG,SLIT2"
TCGA.AF.6672	4	17901351	18464077	156	-0.4272	NEUTRAL	NA	1	LCORL
TCGA.AF.6672	4	18465269	18906201	140	0.006	NEUTRAL	NA	0	None
TCGA.RU.A8FL	4	18758825	19763175	276	0.2051	NEUTRAL	NA	0	None
TCGA.AF.6672	4	18916528	19095651	65	-0.391	NEUTRAL	NA	0	None
TCGA.AF.6672	4	19095958	19854387	173	0.028	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	19143467	19176298	9	-0.0557	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	19243840	42503426	7317	0.0102	NEUTRAL	NA	61	"ADGRA3,ANAPC4,APBB2,ARAP2,ATP8A1,BEND4,C4orf19,CCDC149,CCKAR,CHRNA9,DCAF4L1,DHX15,DTHD1,FAM114A1,GBA3,KCNIP4,KLB,KLF3,KLHL5,LGI2,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PACRGL,PCDH7,PDS5A,PGM2,PHOX2B,PI4K2B,PPARGC1A,PTTG2,RBM47,RBPJ,RELL1,RFC1,RHOH,RPL9,SEL1L3,SEPSECS,SHISA3,SLC30A9,SLC34A2,SLIT2,SMIM14,SMIM20,SOD3,STIM2,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19,ZCCHC4"
TCGA.A6.2675	4	19329241	27815853	2869	-0.2824	NEUTRAL	NA	21	"ADGRA3,ANAPC4,CCDC149,CCKAR,DHX15,GBA3,KCNIP4,LGI2,PACRGL,PI4K2B,PPARGC1A,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.AA.3872	4	19834011	164669427	39240	-0.3082	NEUTRAL	NA	512	Too-Many
TCGA.F4.6460	4	20067225	47265818	8347	-0.2794	NEUTRAL	NA	71	"ADGRA3,ANAPC4,APBB2,ARAP2,ATP8A1,BEND4,C4orf19,CCDC149,CCKAR,CHRNA9,COX7B2,DCAF4L1,DHX15,DTHD1,FAM114A1,GABRA2,GABRA4,GABRB1,GABRG1,GBA3,GNPDA2,GRXCR1,GUF1,KCNIP4,KCTD8,KLB,KLF3,KLHL5,LGI2,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PACRGL,PCDH7,PDS5A,PGM2,PHOX2B,PI4K2B,PPARGC1A,PTTG2,RBM47,RBPJ,RELL1,RFC1,RHOH,RPL9,SEL1L3,SEPSECS,SHISA3,SLC30A9,SLC34A2,SLIT2,SMIM14,SMIM20,SOD3,STIM2,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19,YIPF7,ZCCHC4"
TCGA.CI.6624	4	20251116	84950018	18004	0.1329	NEUTRAL	NA	250	Too-Many
TCGA.AA.3811	4	20437131	24125605	1293	-0.2058	NEUTRAL	NA	6	"ADGRA3,GBA3,KCNIP4,PACRGL,PPARGC1A,SLIT2"
TCGA.AG.3909.01A	4	20469359	20490413	4	0.2042	NEUTRAL	NA	1	SLIT2
TCGA.DM.A28M.01A	4	20469359	26490806	225	-0.0126	NEUTRAL	NA	19	"ADGRA3,ANAPC4,CCDC149,CCKAR,DHX15,GBA3,KCNIP4,LGI2,PACRGL,PI4K2B,PPARGC1A,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,ZCCHC4"
TCGA.AF.6672	4	20480355	28499781	2823	0.0108	NEUTRAL	NA	21	"ADGRA3,ANAPC4,CCDC149,CCKAR,DHX15,GBA3,KCNIP4,LGI2,PACRGL,PI4K2B,PPARGC1A,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.AY.A54L.01A	4	20482287	190947494	6043	-0.1098	NEUTRAL	NA	592	Too-Many
TCGA.AZ.4684.01A	4	20490413	24577839	94	-0.0023	NEUTRAL	NA	7	"ADGRA3,DHX15,GBA3,KCNIP4,PACRGL,PPARGC1A,SLIT2"
TCGA.AA.3509.01A	4	20490413	36115744	267	0.2125	NEUTRAL	NA	23	"ADGRA3,ANAPC4,ARAP2,CCDC149,CCKAR,DHX15,GBA3,KCNIP4,LGI2,PACRGL,PCDH7,PI4K2B,PPARGC1A,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.AG.3909.01A	4	20493337	20552434	17	-0.1261	NEUTRAL	NA	1	SLIT2
TCGA.AG.A01J.01A	4	20543029	183672913	5425	0.0728	NEUTRAL	NA	554	Too-Many
TCGA.AG.3909.01A	4	20555431	20620374	11	0.2217	NEUTRAL	NA	1	SLIT2
TCGA.EI.7004	4	20599590	25556171	1815	0.0101	NEUTRAL	NA	14	"ADGRA3,ANAPC4,CCDC149,DHX15,GBA3,KCNIP4,LGI2,PACRGL,PI4K2B,PPARGC1A,SEPSECS,SLIT2,SOD3,ZCCHC4"
TCGA.AG.3909.01A	4	20715008	25128844	81	0.0599	NEUTRAL	NA	10	"ADGRA3,CCDC149,DHX15,GBA3,KCNIP4,LGI2,PACRGL,PPARGC1A,SEPSECS,SOD3"
TCGA.AA.A010.01A	4	20852134	23815303	34	-0.4212	NEUTRAL	NA	4	"ADGRA3,GBA3,KCNIP4,PPARGC1A"
TCGA.D5.5538	4	21602822	162440767	37999	0.018	NEUTRAL	NA	504	Too-Many
TCGA.AG.3890	4	22220504	34208540	3573	0.1638	NEUTRAL	NA	19	"ADGRA3,ANAPC4,CCDC149,CCKAR,DHX15,GBA3,LGI2,PCDH7,PI4K2B,PPARGC1A,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.AA.A00D.01A	4	22475354	22748967	3	0.1007	NEUTRAL	NA	2	"ADGRA3,GBA3"
TCGA.AG.A02G.01A	4	22820342	25278589	61	-0.0101	NEUTRAL	NA	8	"CCDC149,DHX15,GBA3,LGI2,PI4K2B,PPARGC1A,SEPSECS,SOD3"
TCGA.AA.3844	4	23018747	24117454	386	-0.4045	NEUTRAL	NA	1	PPARGC1A
TCGA.RU.A8FL	4	23063502	24392836	503	0.2496	NEUTRAL	NA	1	PPARGC1A
TCGA.AA.A010.01A	4	23825878	24914381	34	0.3378	NEUTRAL	NA	4	"CCDC149,DHX15,PPARGC1A,SOD3"
TCGA.AA.3850	4	24105608	24397675	139	-0.08945	NEUTRAL	NA	0	None
TCGA.AA.3844	4	24125017	26535959	938	0.0302	NEUTRAL	NA	13	"ANAPC4,CCDC149,CCKAR,DHX15,LGI2,PI4K2B,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,SOD3,ZCCHC4"
TCGA.AA.3941	4	24128427	24397675	128	0.0064	NEUTRAL	NA	0	None
TCGA.AA.3811	4	24128427	26964349	1009	0.2128	NEUTRAL	NA	15	"ANAPC4,CCDC149,CCKAR,DHX15,LGI2,PI4K2B,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.AA.3982	4	24188267	27250046	1071	0.2556	NEUTRAL	NA	15	"ANAPC4,CCDC149,CCKAR,DHX15,LGI2,PI4K2B,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.AA.3850	4	24410023	26533148	805	0.23165	NEUTRAL	NA	13	"ANAPC4,CCDC149,CCKAR,DHX15,LGI2,PI4K2B,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,SOD3,ZCCHC4"
TCGA.AA.3941	4	24410023	27216053	967	0.2805	NEUTRAL	NA	15	"ANAPC4,CCDC149,CCKAR,DHX15,LGI2,PI4K2B,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.AG.A01W.01A	4	24442174	24448830	5	0.0259	NEUTRAL	NA	0	None
TCGA.AA.A00D.01A	4	24521768	24809974	17	-0.3794	NEUTRAL	NA	3	"CCDC149,DHX15,SOD3"
TCGA.AG.A023.01A	4	24544506	25769103	90	-0.1246	NEUTRAL	NA	10	"ANAPC4,CCDC149,DHX15,LGI2,PI4K2B,SEL1L3,SEPSECS,SLC34A2,SOD3,ZCCHC4"
TCGA.AZ.4684.01A	4	24585895	26641700	135	-0.3746	NEUTRAL	NA	14	"ANAPC4,CCDC149,CCKAR,DHX15,LGI2,PI4K2B,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,SOD3,TBC1D19,ZCCHC4"
TCGA.AG.A01W.01A	4	24641171	24769643	10	0.2518	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	4	24863002	25359099	55	-0.2855	NEUTRAL	NA	5	"CCDC149,LGI2,PI4K2B,SEPSECS,ZCCHC4"
TCGA.AA.A00D.01A	4	24875221	31144063	117	-0.43	NEUTRAL	NA	14	"ANAPC4,CCDC149,CCKAR,LGI2,PCDH7,PI4K2B,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,STIM2,TBC1D19,ZCCHC4"
TCGA.AA.A00F.01A	4	25013920	25158446	15	-0.0858	NEUTRAL	NA	2	"LGI2,SEPSECS"
TCGA.AG.3906.01A	4	25030065	25160528	10	-0.1767	NEUTRAL	NA	2	"LGI2,SEPSECS"
TCGA.AA.A00F.01A	4	25161829	25258113	4	0.3538	NEUTRAL	NA	2	"PI4K2B,SEPSECS"
TCGA.AA.A00F.01A	4	25260610	39435778	232	-0.278	NEUTRAL	NA	29	"ANAPC4,ARAP2,C4orf19,CCKAR,DTHD1,FAM114A1,KLB,KLF3,KLHL5,NWD2,PCDH7,PGM2,PI4K2B,PTTG2,RBPJ,RELL1,RFC1,SEL1L3,SLC34A2,SMIM20,STIM2,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,WDR19,ZCCHC4"
TCGA.AG.3906.01A	4	25265330	25769103	54	0.01	NEUTRAL	NA	5	"ANAPC4,PI4K2B,SEL1L3,SLC34A2,ZCCHC4"
TCGA.AA.A010.01A	4	25278589	27024114	120	-0.0567	NEUTRAL	NA	10	"ANAPC4,CCKAR,PI4K2B,RBPJ,SEL1L3,SLC34A2,SMIM20,STIM2,TBC1D19,ZCCHC4"
TCGA.AG.3891.01A	4	25278589	39408573	292	-0.0667	NEUTRAL	NA	29	"ANAPC4,ARAP2,C4orf19,CCKAR,DTHD1,FAM114A1,KLB,KLF3,KLHL5,NWD2,PCDH7,PGM2,PI4K2B,PTTG2,RBPJ,RELL1,RFC1,SEL1L3,SLC34A2,SMIM20,STIM2,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,WDR19,ZCCHC4"
TCGA.AG.4009.01A	4	25314384	27024114	115	0.0036	NEUTRAL	NA	9	"ANAPC4,CCKAR,RBPJ,SEL1L3,SLC34A2,SMIM20,STIM2,TBC1D19,ZCCHC4"
TCGA.AG.A02G.01A	4	25334808	27019281	110	0.1671	NEUTRAL	NA	9	"ANAPC4,CCKAR,RBPJ,SEL1L3,SLC34A2,SMIM20,STIM2,TBC1D19,ZCCHC4"
TCGA.AG.3909.01A	4	25404529	37639996	140	-0.0166	NEUTRAL	NA	14	"ANAPC4,ARAP2,C4orf19,CCKAR,DTHD1,NWD2,PCDH7,RBPJ,RELL1,SEL1L3,SLC34A2,SMIM20,STIM2,TBC1D19"
TCGA.AG.A01W.01A	4	25412952	39044157	256	-0.1963	NEUTRAL	NA	23	"ANAPC4,ARAP2,C4orf19,CCKAR,DTHD1,FAM114A1,KLF3,NWD2,PCDH7,PGM2,PTTG2,RBPJ,RELL1,SEL1L3,SLC34A2,SMIM20,STIM2,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156"
TCGA.AZ.4614	4	25451404	28015387	861	0.215	NEUTRAL	NA	7	"CCKAR,RBPJ,SEL1L3,SLC34A2,SMIM20,STIM2,TBC1D19"
TCGA.EI.7004	4	25570159	60325009	9162	-0.0115	NEUTRAL	NA	107	Too-Many
TCGA.AG.A023.01A	4	25777853	36230534	103	0.241	NEUTRAL	NA	8	"ARAP2,CCKAR,PCDH7,RBPJ,SEL1L3,SMIM20,STIM2,TBC1D19"
TCGA.AA.A00N.01A	4	25831661	26387893	12	-0.2603	NEUTRAL	NA	3	"RBPJ,SEL1L3,SMIM20"
TCGA.A6.2677	4	26077432	190921708	41238	0.0934	NEUTRAL	NA	574	Too-Many
TCGA.AG.3906.01A	4	26364151	41699088	378	0.0049	NEUTRAL	NA	37	"APBB2,ARAP2,C4orf19,CCKAR,CHRNA9,DTHD1,FAM114A1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PCDH7,PDS5A,PGM2,PTTG2,RBM47,RBPJ,RELL1,RFC1,RHOH,RPL9,SMIM14,STIM2,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,UBE2K,UCHL1,UGDH,WDR19"
TCGA.D5.6931	4	26418723	38213380	3527	-0.3721	NEUTRAL	NA	13	"ARAP2,C4orf19,CCKAR,DTHD1,NWD2,PCDH7,PGM2,PTTG2,RBPJ,RELL1,STIM2,TBC1D1,TBC1D19"
TCGA.DM.A28M.01A	4	26491727	36309775	77	0.3437	NEUTRAL	NA	6	"ARAP2,CCKAR,DTHD1,PCDH7,STIM2,TBC1D19"
TCGA.AA.3850	4	26535660	26638076	16	-0.22725	NEUTRAL	NA	1	TBC1D19
TCGA.AA.3844	4	26540686	27020693	80	-0.3288	NEUTRAL	NA	2	"STIM2,TBC1D19"
TCGA.AZ.4684.01A	4	26667900	37445439	75	0.2428	NEUTRAL	NA	6	"ARAP2,DTHD1,NWD2,PCDH7,STIM2,TBC1D19"
TCGA.AA.3850	4	26753640	26964349	48	0.15795	NEUTRAL	NA	2	"STIM2,TBC1D19"
TCGA.A6.3810.01A	4	26921094	42145414	408	-0.2701	NEUTRAL	NA	39	"APBB2,ARAP2,BEND4,C4orf19,CHRNA9,DCAF4L1,DTHD1,FAM114A1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PCDH7,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SLC30A9,SMIM14,STIM2,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3850	4	26966982	27180603	70	0.15895	NEUTRAL	NA	1	STIM2
TCGA.AA.3811	4	27020693	27250046	89	0.214	NEUTRAL	NA	1	STIM2
TCGA.AG.A02G.01A	4	27024114	49046737	672	-0.4511	NEUTRAL	NA	66	"APBB2,ARAP2,ATP10D,ATP8A1,BEND4,C4orf19,CHRNA9,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DTHD1,FAM114A1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NFXL1,NIPAL1,NSUN7,NWD2,OCIAD1,OCIAD2,PCDH7,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLAIN2,SLC10A4,SLC30A9,SMIM14,STIM2,TBC1D1,TEC,TLR1,TLR10,TLR6,TMEM156,TMEM33,TXK,UBE2K,UCHL1,UGDH,WDR19,YIPF7,ZAR1"
TCGA.AA.3844	4	27030321	27247051	87	0.0251	NEUTRAL	NA	0	None
TCGA.AA.3811	4	27254354	37405468	2929	-0.3365	NEUTRAL	NA	4	"ARAP2,DTHD1,NWD2,PCDH7"
TCGA.AA.3982	4	27254354	37479169	2959	-0.3616	NEUTRAL	NA	5	"ARAP2,C4orf19,DTHD1,NWD2,PCDH7"
TCGA.RU.A8FL	4	27327702	42964060	4820	0.2455	NEUTRAL	NA	41	"APBB2,ARAP2,ATP8A1,BEND4,C4orf19,CHRNA9,DCAF4L1,DTHD1,FAM114A1,GRXCR1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PCDH7,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19"
TCGA.A6.2675	4	27815913	31678992	1098	0.2349	NEUTRAL	NA	1	PCDH7
TCGA.AG.3885	4	27888865	28451341	168	-0.5089	NEUTRAL	NA	0	None
TCGA.AZ.4614	4	28022095	32316566	1202	-0.2526	NEUTRAL	NA	1	PCDH7
TCGA.AA.3866	4	28092198	190543147	44900	-0.2608	NEUTRAL	NA	569	Too-Many
TCGA.D5.6929	4	28333705	28768149	134	-0.3894	NEUTRAL	NA	0	None
TCGA.AG.3885	4	28454605	39836932	3401	-0.0235	NEUTRAL	NA	25	"ARAP2,C4orf19,DTHD1,FAM114A1,KLB,KLF3,KLHL5,LIAS,NWD2,PCDH7,PDS5A,PGM2,PTTG2,RELL1,RFC1,RPL9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,UBE2K,UGDH,WDR19"
TCGA.AF.6672	4	28513406	52912588	5860	-0.3866	NEUTRAL	NA	68	"APBB2,ARAP2,ATP10D,ATP8A1,BEND4,C4orf19,CHRNA9,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DCUN1D4,DTHD1,FAM114A1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,KLB,KLF3,KLHL5,LIAS,LIMCH1,LRRC66,N4BP2,NFXL1,NIPAL1,NSUN7,NWD2,OCIAD1,OCIAD2,PCDH7,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SGCB,SHISA3,SLAIN2,SLC10A4,SLC30A9,SMIM14,TBC1D1,TEC,TLR1,TLR10,TLR6,TMEM156,TMEM33,TXK,UBE2K,UCHL1,UGDH,WDR19,YIPF7,ZAR1"
TCGA.D5.6929	4	28769117	190921708	44653	-0.0318	NEUTRAL	NA	570	Too-Many
TCGA.AA.3851	4	29274459	190921708	44563	-0.1679	NEUTRAL	NA	570	Too-Many
TCGA.EI.6508	4	29425636	86490362	15353	0.0176	NEUTRAL	NA	233	Too-Many
TCGA.AZ.4681	4	29523459	91664022	16739	-0.0245	NEUTRAL	NA	263	Too-Many
TCGA.AG.4009.01A	4	30921728	40114999	241	-0.054	NEUTRAL	NA	26	"ARAP2,C4orf19,DTHD1,FAM114A1,KLB,KLF3,KLHL5,LIAS,N4BP2,NWD2,PCDH7,PDS5A,PGM2,PTTG2,RELL1,RFC1,RPL9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,UBE2K,UGDH,WDR19"
TCGA.A6.2675	4	31685261	34308022	527	-0.2212	NEUTRAL	NA	0	None
TCGA.F4.6704	4	31692777	152789392	31750	-0.0185	NEUTRAL	NA	446	Too-Many
TCGA.AZ.4614	4	32324771	32471587	44	0.0914	NEUTRAL	NA	0	None
TCGA.AZ.4614	4	32879076	33287615	105	0.1279	NEUTRAL	NA	0	None
TCGA.AA.3850	4	33191234	33334176	46	-0.04565	NEUTRAL	NA	0	None
TCGA.AG.3890	4	34271801	34476248	64	-0.4635	NEUTRAL	NA	0	None
TCGA.A6.2675	4	34319620	36920722	813	0.2536	NEUTRAL	NA	2	"ARAP2,DTHD1"
TCGA.AG.3890	4	34586107	52696791	4299	-0.333	NEUTRAL	NA	64	"APBB2,ARAP2,ATP10D,ATP8A1,BEND4,C4orf19,CHRNA9,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DTHD1,FAM114A1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NFXL1,NIPAL1,NSUN7,NWD2,OCIAD1,OCIAD2,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLAIN2,SLC10A4,SLC30A9,SMIM14,TBC1D1,TEC,TLR1,TLR10,TLR6,TMEM156,TMEM33,TXK,UBE2K,UCHL1,UGDH,WDR19,YIPF7,ZAR1"
TCGA.EI.7002	4	34841363	102709118	18292	-0.2244	NEUTRAL	NA	292	Too-Many
TCGA.NH.A6GC	4	35498343	119155228	22411	0.0138	NEUTRAL	NA	349	Too-Many
TCGA.5M.AAT5	4	35498343	182376356	40035	-0.3453	NEUTRAL	NA	531	Too-Many
TCGA.F5.6811.01A	4	35785545	35826370	11	0.367	NEUTRAL	NA	0	None
TCGA.F5.6811.01A	4	35828870	46625019	464	-0.0287	NEUTRAL	NA	46	"APBB2,ARAP2,ATP8A1,BEND4,C4orf19,CHRNA9,DCAF4L1,DTHD1,FAM114A1,GABRA2,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19,YIPF7"
TCGA.CK.4952.01A	4	35839456	62045538	1044	-0.1488	NEUTRAL	NA	99	"AASDH,APBB2,ARAP2,ARL9,ATP10D,ATP8A1,BEND4,C4orf19,CEP135,CHIC2,CHRNA9,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DCUN1D4,DTHD1,ERVMER34-1,EXOC1,FAM114A1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,HOPX,IGFBP7,KCTD8,KDR,KIAA1211,KIT,KLB,KLF3,KLHL5,LIAS,LIMCH1,LNX1,LRRC66,N4BP2,NFXL1,NIPAL1,NMU,NOA1,NSUN7,NWD2,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,PDS5A,PGM2,PHOX2B,POLR2B,PPAT,PTTG2,RASL11B,RBM47,RELL1,REST,RFC1,RHOH,RPL9,SCFD2,SGCB,SHISA3,SLAIN2,SLC10A4,SLC30A9,SMIM14,SPATA18,SPINK2,SRD5A3,SRP72,TBC1D1,TEC,THEGL,TLR1,TLR10,TLR6,TMEM156,TMEM165,TMEM33,TXK,UBE2K,UCHL1,UGDH,USP46,WDR19,YIPF7,ZAR1"
TCGA.A6.6652	4	36078070	190921708	42852	0.0114	NEUTRAL	NA	569	Too-Many
TCGA.AA.A010.01A	4	36134800	39114623	123	0.0163	NEUTRAL	NA	15	"ARAP2,C4orf19,DTHD1,FAM114A1,KLF3,KLHL5,NWD2,PGM2,PTTG2,RELL1,TBC1D1,TLR1,TLR10,TLR6,TMEM156"
TCGA.CK.5914.01A	4	36152475	38119644	74	-0.0315	NEUTRAL	NA	8	"ARAP2,C4orf19,DTHD1,NWD2,PGM2,PTTG2,RELL1,TBC1D1"
TCGA.AA.A00D.01A	4	36211985	39257421	88	-0.3582	NEUTRAL	NA	16	"ARAP2,C4orf19,DTHD1,FAM114A1,KLF3,KLHL5,NWD2,PGM2,PTTG2,RELL1,TBC1D1,TLR1,TLR10,TLR6,TMEM156,WDR19"
TCGA.DM.A28M.01A	4	36317852	44653505	402	-0.1465	NEUTRAL	NA	41	"APBB2,ATP8A1,BEND4,C4orf19,CHRNA9,DCAF4L1,DTHD1,FAM114A1,GRXCR1,KCTD8,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19,YIPF7"
TCGA.A6.2675	4	36923737	58814980	5497	-0.0971	NEUTRAL	NA	97	"AASDH,APBB2,ARL9,ATP10D,ATP8A1,BEND4,C4orf19,CEP135,CHIC2,CHRNA9,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DCUN1D4,ERVMER34-1,EXOC1,FAM114A1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,HOPX,IGFBP7,KCTD8,KDR,KIAA1211,KIT,KLB,KLF3,KLHL5,LIAS,LIMCH1,LNX1,LRRC66,N4BP2,NFXL1,NIPAL1,NMU,NOA1,NSUN7,NWD2,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,PDS5A,PGM2,PHOX2B,POLR2B,PPAT,PTTG2,RASL11B,RBM47,RELL1,REST,RFC1,RHOH,RPL9,SCFD2,SGCB,SHISA3,SLAIN2,SLC10A4,SLC30A9,SMIM14,SPATA18,SPINK2,SRD5A3,SRP72,TBC1D1,TEC,THEGL,TLR1,TLR10,TLR6,TMEM156,TMEM165,TMEM33,TXK,UBE2K,UCHL1,UGDH,USP46,WDR19,YIPF7,ZAR1"
TCGA.AA.3867	4	37114503	42686529	1939	-0.422	NEUTRAL	NA	37	"APBB2,ATP8A1,BEND4,C4orf19,CHRNA9,DCAF4L1,FAM114A1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3811	4	37407732	42489465	1719	0.2137	NEUTRAL	NA	37	"APBB2,ATP8A1,BEND4,C4orf19,CHRNA9,DCAF4L1,FAM114A1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.A00N.01A	4	37432177	38893310	66	-0.3851	NEUTRAL	NA	11	"C4orf19,FAM114A1,KLF3,NWD2,PGM2,PTTG2,RELL1,TBC1D1,TLR1,TLR10,TLR6"
TCGA.AA.A00L.01A	4	37432177	41687680	217	-0.3685	NEUTRAL	NA	30	"APBB2,C4orf19,CHRNA9,FAM114A1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PDS5A,PGM2,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3939.01A	4	37432177	190903819	5714	0.2276	NEUTRAL	NA	567	Too-Many
TCGA.AA.3844	4	37437744	38768532	604	0.0591	NEUTRAL	NA	7	"C4orf19,KLF3,NWD2,PGM2,PTTG2,RELL1,TBC1D1"
TCGA.A6.3808.01A	4	37440384	39188122	95	-0.449	NEUTRAL	NA	14	"C4orf19,FAM114A1,KLF3,KLHL5,NWD2,PGM2,PTTG2,RELL1,TBC1D1,TLR1,TLR10,TLR6,TMEM156,WDR19"
TCGA.AA.3509.01A	4	37444938	41747812	307	-0.1765	NEUTRAL	NA	31	"APBB2,C4orf19,CHRNA9,FAM114A1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3982	4	37481130	38768532	583	0.3059	NEUTRAL	NA	6	"C4orf19,KLF3,PGM2,PTTG2,RELL1,TBC1D1"
TCGA.AA.3850	4	37518562	38768532	574	0.24315	NEUTRAL	NA	6	"C4orf19,KLF3,PGM2,PTTG2,RELL1,TBC1D1"
TCGA.AA.3941	4	37518562	38776069	573	0.3404	NEUTRAL	NA	7	"C4orf19,KLF3,PGM2,PTTG2,RELL1,TBC1D1,TLR10"
TCGA.AG.A023.01A	4	37632968	183710259	5133	0.079	NEUTRAL	NA	528	Too-Many
TCGA.CK.4948.01B	4	37828299	39352938	133	0.0695	NEUTRAL	NA	12	"FAM114A1,KLF3,KLHL5,PGM2,PTTG2,RFC1,TBC1D1,TLR1,TLR10,TLR6,TMEM156,WDR19"
TCGA.AG.3909.01A	4	37841415	38776769	37	-0.2518	NEUTRAL	NA	5	"KLF3,PGM2,PTTG2,TBC1D1,TLR10"
TCGA.AA.3815.01A	4	37845967	70804813	1255	-0.0759	NEUTRAL	NA	120	Too-Many
TCGA.AA.3861.01A	4	38023167	56435847	819	0.0684	NEUTRAL	NA	76	"APBB2,ATP10D,ATP8A1,BEND4,CHIC2,CHRNA9,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DCUN1D4,ERVMER34-1,FAM114A1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,KCTD8,KDR,KIT,KLB,KLF3,KLHL5,LIAS,LIMCH1,LNX1,LRRC66,N4BP2,NFXL1,NIPAL1,NSUN7,OCIAD1,OCIAD2,PDCL2,PDGFRA,PDS5A,PHOX2B,RASL11B,RBM47,RFC1,RHOH,RPL9,SCFD2,SGCB,SHISA3,SLAIN2,SLC10A4,SLC30A9,SMIM14,SPATA18,SRD5A3,TBC1D1,TEC,TLR1,TLR10,TLR6,TMEM156,TMEM165,TMEM33,TXK,UBE2K,UCHL1,UGDH,USP46,WDR19,YIPF7,ZAR1"
TCGA.DT.5265	4	38091799	38386657	145	0.2899	NEUTRAL	NA	1	TBC1D1
TCGA.D5.6931	4	38216218	64131237	6288	0.0076	NEUTRAL	NA	92	"AASDH,ADGRL3,APBB2,ARL9,ATP10D,ATP8A1,BEND4,CEP135,CHIC2,CHRNA9,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DCUN1D4,ERVMER34-1,EXOC1,FAM114A1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,HOPX,IGFBP7,KCTD8,KDR,KIAA1211,KIT,KLB,KLF3,KLHL5,LIAS,LIMCH1,LNX1,LRRC66,N4BP2,NFXL1,NIPAL1,NMU,NOA1,NSUN7,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,PDS5A,PHOX2B,POLR2B,PPAT,RASL11B,RBM47,REST,RFC1,RHOH,RPL9,SCFD2,SGCB,SHISA3,SLAIN2,SLC10A4,SLC30A9,SMIM14,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TLR1,TLR10,TLR6,TMEM156,TMEM165,TMEM33,TXK,UBE2K,UCHL1,UGDH,USP46,WDR19,YIPF7,ZAR1"
TCGA.AZ.4614	4	38260450	38270260	5	-0.2876	NEUTRAL	NA	0	None
TCGA.AZ.4614	4	38270460	43893036	1748	0.1527	NEUTRAL	NA	32	"APBB2,ATP8A1,BEND4,CHRNA9,DCAF4L1,FAM114A1,GRXCR1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,PDS5A,PHOX2B,RBM47,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3875	4	38321681	190921708	41943	0	NEUTRAL	NA	561	Too-Many
TCGA.DT.5265	4	38391604	190921708	41796	0	NEUTRAL	NA	561	Too-Many
TCGA.AA.3982	4	38777235	41541118	794	0.3695	NEUTRAL	NA	23	"APBB2,CHRNA9,FAM114A1,KLB,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,PDS5A,RBM47,RFC1,RHOH,RPL9,SMIM14,TLR1,TLR10,TLR6,TMEM156,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3844	4	38777235	42718501	1172	0.0237	NEUTRAL	NA	30	"APBB2,ATP8A1,BEND4,CHRNA9,DCAF4L1,FAM114A1,KLB,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,PDS5A,PHOX2B,RBM47,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3941	4	38782480	38911344	52	0.2151	NEUTRAL	NA	4	"FAM114A1,TLR1,TLR10,TLR6"
TCGA.CK.5914.01A	4	38893310	39184094	29	0.1784	NEUTRAL	NA	4	"FAM114A1,KLHL5,TMEM156,WDR19"
TCGA.AG.3909.01A	4	38907091	39346969	80	0.0922	NEUTRAL	NA	5	"FAM114A1,KLHL5,RFC1,TMEM156,WDR19"
TCGA.CK.5914.01A	4	39205253	39367779	49	0.061	NEUTRAL	NA	2	"RFC1,WDR19"
TCGA.AG.A00C.01A	4	39321981	39779939	48	0.3516	NEUTRAL	NA	7	"KLB,LIAS,RFC1,RPL9,SMIM14,UBE2K,UGDH"
TCGA.AG.3909.01A	4	39352938	39435778	3	-0.5111	NEUTRAL	NA	2	"KLB,RFC1"
TCGA.CK.4948.01B	4	39367779	48379886	420	-0.3113	NEUTRAL	NA	42	"APBB2,ATP10D,ATP8A1,BEND4,CHRNA9,CNGA1,COMMD8,CORIN,COX7B2,DCAF4L1,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,KLB,LIAS,LIMCH1,N4BP2,NFXL1,NIPAL1,NSUN7,PDS5A,PHOX2B,RBM47,RFC1,RHOH,RPL9,SHISA3,SLAIN2,SLC30A9,SMIM14,TEC,TMEM33,TXK,UBE2K,UCHL1,UGDH,YIPF7"
TCGA.AA.A00D.01A	4	39408573	40155733	58	-0.0421	NEUTRAL	NA	8	"KLB,LIAS,N4BP2,PDS5A,RPL9,SMIM14,UBE2K,UGDH"
TCGA.AG.3891.01A	4	39435778	39863790	48	0.3005	NEUTRAL	NA	7	"KLB,LIAS,PDS5A,RPL9,SMIM14,UBE2K,UGDH"
TCGA.AA.A00F.01A	4	39439319	40155733	56	0.0339	NEUTRAL	NA	8	"KLB,LIAS,N4BP2,PDS5A,RPL9,SMIM14,UBE2K,UGDH"
TCGA.AA.A01Q.01A	4	39449883	44680588	180	0.0992	NEUTRAL	NA	26	"APBB2,ATP8A1,BEND4,CHRNA9,DCAF4L1,GRXCR1,GUF1,KCTD8,KLB,LIAS,LIMCH1,N4BP2,NSUN7,PDS5A,PHOX2B,RBM47,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TMEM33,UBE2K,UCHL1,UGDH,YIPF7"
TCGA.AA.A010.01A	4	39505982	39881331	35	0.0582	NEUTRAL	NA	4	"PDS5A,SMIM14,UBE2K,UGDH"
TCGA.AG.A01W.01A	4	39522625	47801607	347	-0.2093	NEUTRAL	NA	32	"APBB2,ATP10D,ATP8A1,BEND4,CHRNA9,COMMD8,CORIN,COX7B2,DCAF4L1,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,LIMCH1,N4BP2,NSUN7,PDS5A,PHOX2B,RBM47,RHOH,SHISA3,SLC30A9,SMIM14,TMEM33,UBE2K,UCHL1,UGDH,YIPF7"
TCGA.AG.3909.01A	4	39553666	39738985	6	0.1466	NEUTRAL	NA	2	"SMIM14,UBE2K"
TCGA.CK.5914.01A	4	39827025	39929553	31	0.1059	NEUTRAL	NA	1	PDS5A
TCGA.AG.A00C.01A	4	39827025	40119438	37	-0.1432	NEUTRAL	NA	2	"N4BP2,PDS5A"
TCGA.AG.3909.01A	4	39839494	40114999	35	0.0711	NEUTRAL	NA	2	"N4BP2,PDS5A"
TCGA.AG.3891.01A	4	39864512	57521985	755	-0.1374	NEUTRAL	NA	71	"AASDH,APBB2,ARL9,ATP10D,ATP8A1,BEND4,CEP135,CHIC2,CHRNA9,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,HOPX,KCTD8,KDR,KIAA1211,KIT,LIMCH1,LNX1,LRRC66,N4BP2,NFXL1,NIPAL1,NMU,NSUN7,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,PDS5A,PHOX2B,PPAT,RASL11B,RBM47,RHOH,SCFD2,SGCB,SHISA3,SLAIN2,SLC10A4,SLC30A9,SPATA18,SRD5A3,SRP72,TEC,THEGL,TMEM165,TMEM33,TXK,UCHL1,USP46,YIPF7,ZAR1"
TCGA.AA.A010.01A	4	39921890	40155733	23	-0.1234	NEUTRAL	NA	2	"N4BP2,PDS5A"
TCGA.AA.A00N.01A	4	40114999	40125714	6	-0.1987	NEUTRAL	NA	1	N4BP2
TCGA.AG.4009.01A	4	40119438	40155733	12	-0.4304	NEUTRAL	NA	1	N4BP2
TCGA.AG.4009.01A	4	40244990	40355984	7	0.2368	NEUTRAL	NA	2	"CHRNA9,RHOH"
TCGA.AG.A00C.01A	4	40244990	40427883	8	-0.071	NEUTRAL	NA	3	"CHRNA9,RBM47,RHOH"
TCGA.CK.5914.01A	4	40244990	42553180	127	-0.0996	NEUTRAL	NA	14	"APBB2,ATP8A1,BEND4,CHRNA9,DCAF4L1,LIMCH1,NSUN7,PHOX2B,RBM47,RHOH,SHISA3,SLC30A9,TMEM33,UCHL1"
TCGA.AA.A00F.01A	4	40244990	48894742	304	-0.294	NEUTRAL	NA	38	"APBB2,ATP10D,ATP8A1,BEND4,CHRNA9,CNGA1,COMMD8,CORIN,COX7B2,DCAF4L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,LIMCH1,NFXL1,NIPAL1,NSUN7,OCIAD1,OCIAD2,PHOX2B,RBM47,RHOH,SHISA3,SLAIN2,SLC10A4,SLC30A9,TEC,TMEM33,TXK,UCHL1,YIPF7,ZAR1"
TCGA.AG.4009.01A	4	40427883	40439787	4	-0.4241	NEUTRAL	NA	1	RBM47
TCGA.AG.A00C.01A	4	40434616	40800756	12	0.3565	NEUTRAL	NA	2	"NSUN7,RBM47"
TCGA.AA.3975	4	40473783	87108554	12268	0.053	NEUTRAL	NA	206	Too-Many
TCGA.AA.3496	4	40603054	77285832	9079	-0.0614	NEUTRAL	NA	164	Too-Many
TCGA.AG.4009.01A	4	40752693	41035176	22	0.1319	NEUTRAL	NA	2	"APBB2,NSUN7"
TCGA.AA.A00D.01A	4	40752693	41684312	38	-0.2383	NEUTRAL	NA	4	"APBB2,LIMCH1,NSUN7,UCHL1"
TCGA.AA.A010.01A	4	40762414	41035176	22	0.3654	NEUTRAL	NA	2	"APBB2,NSUN7"
TCGA.AG.A00C.01A	4	40810272	44637888	125	-0.1877	NEUTRAL	NA	14	"APBB2,ATP8A1,BEND4,DCAF4L1,GRXCR1,KCTD8,LIMCH1,NSUN7,PHOX2B,SHISA3,SLC30A9,TMEM33,UCHL1,YIPF7"
TCGA.AG.3909.01A	4	40810272	44680588	128	-0.15	NEUTRAL	NA	15	"APBB2,ATP8A1,BEND4,DCAF4L1,GRXCR1,GUF1,KCTD8,LIMCH1,NSUN7,PHOX2B,SHISA3,SLC30A9,TMEM33,UCHL1,YIPF7"
TCGA.AA.3850	4	40931711	41175413	94	0.18735	NEUTRAL	NA	1	APBB2
TCGA.F5.6863	4	41149315	56481652	3174	-0.0022	NEUTRAL	NA	55	"APBB2,ATP10D,ATP8A1,BEND4,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,KCTD8,KDR,KIT,LIMCH1,LNX1,LRRC66,NFXL1,NIPAL1,NMU,OCIAD1,OCIAD2,PDCL2,PDGFRA,PHOX2B,RASL11B,SCFD2,SGCB,SHISA3,SLAIN2,SLC10A4,SLC30A9,SPATA18,SRD5A3,TEC,TMEM165,TMEM33,TXK,UCHL1,USP46,YIPF7,ZAR1"
TCGA.AA.3850	4	41181160	41518650	119	0.22635	NEUTRAL	NA	3	"APBB2,LIMCH1,UCHL1"
TCGA.AA.3941	4	41183064	41518650	118	0.3401	NEUTRAL	NA	3	"APBB2,LIMCH1,UCHL1"
TCGA.AA.A010.01A	4	41262613	41699088	33	-0.0871	NEUTRAL	NA	2	"LIMCH1,UCHL1"
TCGA.A6.3808.01A	4	41265193	56435847	576	0.2268	NEUTRAL	NA	53	"ATP10D,ATP8A1,BEND4,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,KCTD8,KDR,KIT,LIMCH1,LNX1,LRRC66,NFXL1,NIPAL1,OCIAD1,OCIAD2,PDCL2,PDGFRA,PHOX2B,RASL11B,SCFD2,SGCB,SHISA3,SLAIN2,SLC10A4,SLC30A9,SPATA18,SRD5A3,TEC,TMEM165,TMEM33,TXK,UCHL1,USP46,YIPF7,ZAR1"
TCGA.AG.4009.01A	4	41496536	48158623	266	-0.0515	NEUTRAL	NA	26	"ATP10D,ATP8A1,BEND4,CNGA1,COMMD8,CORIN,COX7B2,DCAF4L1,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,LIMCH1,NFXL1,NIPAL1,PHOX2B,SHISA3,SLC30A9,TEC,TMEM33,TXK,YIPF7"
TCGA.AA.3850	4	41521193	41629446	38	-0.28735	NEUTRAL	NA	1	LIMCH1
TCGA.AA.3941	4	41521193	41629446	38	-0.1351	NEUTRAL	NA	1	LIMCH1
TCGA.DM.A28F	4	41532102	91614699	13080	0.0007	NEUTRAL	NA	231	Too-Many
TCGA.AA.3982	4	41554465	41565886	8	-0.4982	NEUTRAL	NA	1	LIMCH1
TCGA.AA.3982	4	41570745	42617134	335	0.2049	NEUTRAL	NA	8	"ATP8A1,BEND4,DCAF4L1,LIMCH1,PHOX2B,SHISA3,SLC30A9,TMEM33"
TCGA.AA.3941	4	41634776	42408171	240	0.3008	NEUTRAL	NA	7	"BEND4,DCAF4L1,LIMCH1,PHOX2B,SHISA3,SLC30A9,TMEM33"
TCGA.AA.3850	4	41634776	42453252	255	0.19985	NEUTRAL	NA	8	"ATP8A1,BEND4,DCAF4L1,LIMCH1,PHOX2B,SHISA3,SLC30A9,TMEM33"
TCGA.AZ.4684.01A	4	41686382	44680588	92	-0.1136	NEUTRAL	NA	12	"ATP8A1,BEND4,DCAF4L1,GRXCR1,GUF1,KCTD8,LIMCH1,PHOX2B,SHISA3,SLC30A9,TMEM33,YIPF7"
TCGA.AA.3509.01A	4	41749319	44651975	83	0.2846	NEUTRAL	NA	10	"ATP8A1,BEND4,DCAF4L1,GRXCR1,KCTD8,PHOX2B,SHISA3,SLC30A9,TMEM33,YIPF7"
TCGA.AG.3906.01A	4	41940600	48140630	232	-0.0861	NEUTRAL	NA	24	"ATP10D,ATP8A1,BEND4,CNGA1,COMMD8,CORIN,COX7B2,DCAF4L1,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,NFXL1,NIPAL1,SHISA3,SLC30A9,TEC,TMEM33,TXK,YIPF7"
TCGA.AA.A00L.01A	4	41951262	42505403	39	-0.3478	NEUTRAL	NA	6	"ATP8A1,BEND4,DCAF4L1,SHISA3,SLC30A9,TMEM33"
TCGA.AA.A010.01A	4	42122023	42571099	27	-0.0651	NEUTRAL	NA	3	"ATP8A1,BEND4,SHISA3"
TCGA.A6.3810.01A	4	42153626	57547738	633	0.1635	NEUTRAL	NA	58	"AASDH,ARL9,ATP10D,ATP8A1,BEND4,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,HOPX,KCTD8,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,PPAT,RASL11B,SCFD2,SGCB,SHISA3,SLAIN2,SLC10A4,SPATA18,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,YIPF7,ZAR1"
TCGA.AA.3811	4	42490542	47460515	1248	-0.3378	NEUTRAL	NA	12	"ATP8A1,COMMD8,COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.DY.A1DC	4	42509100	58747839	3531	0.0113	NEUTRAL	NA	61	"AASDH,ARL9,ATP10D,ATP8A1,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GSX2,GUF1,HOPX,IGFBP7,KCTD8,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,YIPF7,ZAR1"
TCGA.CK.5914.01A	4	42554485	42581783	7	-0.4598	NEUTRAL	NA	1	ATP8A1
TCGA.CK.5914.01A	4	42583621	44680588	24	0.2651	NEUTRAL	NA	5	"ATP8A1,GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.AA.A010.01A	4	42592784	44651975	19	-0.0556	NEUTRAL	NA	4	"ATP8A1,GRXCR1,KCTD8,YIPF7"
TCGA.AA.3982	4	42624014	42722226	38	0.007	NEUTRAL	NA	1	ATP8A1
TCGA.AA.3982	4	42727754	42740663	9	0.0322	NEUTRAL	NA	0	None
TCGA.AA.3982	4	42753187	47460515	1143	-0.3991	NEUTRAL	NA	11	"COMMD8,COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.AA.A00D.01A	4	42895265	44700544	21	-0.1889	NEUTRAL	NA	4	"GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.A6.2671	4	42895714	45961672	783	0.0072	NEUTRAL	NA	5	"GNPDA2,GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.AG.3885	4	42933495	190921708	40450	-0.0329	NEUTRAL	NA	530	Too-Many
TCGA.RU.A8FL	4	42981510	46086059	760	-0.464	NEUTRAL	NA	6	"GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.AG.3591	4	43068227	43145073	15	0.2024	NEUTRAL	NA	0	None
TCGA.AA.3685	4	43156438	54323313	1701	0.1248	NEUTRAL	NA	33	"ATP10D,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GUF1,KCTD8,LRRC66,NFXL1,NIPAL1,OCIAD1,OCIAD2,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,TEC,TXK,USP46,YIPF7,ZAR1"
TCGA.AG.3591	4	43156438	190921708	40362	0	NEUTRAL	NA	529	Too-Many
TCGA.AZ.4614	4	43900284	84809101	10340	-0.2481	NEUTRAL	NA	188	Too-Many
TCGA.AF.2692	4	43900433	49063478	1159	0.0677	NEUTRAL	NA	24	"ATP10D,CNGA1,COMMD8,CORIN,COX7B2,CWH43,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GUF1,KCTD8,NFXL1,NIPAL1,OCIAD1,OCIAD2,SLAIN2,SLC10A4,TEC,TXK,YIPF7,ZAR1"
TCGA.D5.6932	4	43950506	80551975	9132	0.041	NEUTRAL	NA	165	Too-Many
TCGA.AA.3952	4	43950506	91475786	12287	0.0411	NEUTRAL	NA	222	Too-Many
TCGA.DC.4749	4	43988122	48332640	1046	0.029	NEUTRAL	NA	17	"ATP10D,CNGA1,COMMD8,CORIN,COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GUF1,KCTD8,NFXL1,NIPAL1,TEC,TXK,YIPF7"
TCGA.CM.6675	4	44173738	83124791	9845	-0.1189	NEUTRAL	NA	172	Too-Many
TCGA.CM.5862	4	44186826	59375581	3202	0.2983	NEUTRAL	NA	59	"AASDH,ARL9,ATP10D,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GSX2,GUF1,HOPX,IGFBP7,KCTD8,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,YIPF7,ZAR1"
TCGA.AG.A00C.01A	4	44651975	44693631	15	0.2018	NEUTRAL	NA	2	"GUF1,YIPF7"
TCGA.AA.A01Q.01A	4	44682416	46980995	47	-0.3763	NEUTRAL	NA	6	"COX7B2,GABRA2,GABRA4,GABRG1,GNPDA2,GUF1"
TCGA.AA.A010.01A	4	44691819	46980995	38	-0.4675	NEUTRAL	NA	6	"COX7B2,GABRA2,GABRA4,GABRG1,GNPDA2,GUF1"
TCGA.CK.5914.01A	4	44691819	48485542	168	0.1115	NEUTRAL	NA	17	"ATP10D,CNGA1,COMMD8,CORIN,COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GUF1,NFXL1,NIPAL1,SLAIN2,SLC10A4,TEC,TXK"
TCGA.AG.A00C.01A	4	44696392	46334569	25	-0.2175	NEUTRAL	NA	4	"GABRA2,GABRG1,GNPDA2,GUF1"
TCGA.5M.AAT4	4	45053510	91566874	12038	-0.1821	NEUTRAL	NA	218	Too-Many
TCGA.AG.3909.01A	4	46042997	46334569	15	0.0874	NEUTRAL	NA	2	"GABRA2,GABRG1"
TCGA.AD.6899	4	46086059	182988358	36796	-0.0567	NEUTRAL	NA	487	Too-Many
TCGA.RU.A8FL	4	46096134	49584108	643	0.2484	NEUTRAL	NA	20	"ATP10D,CNGA1,COMMD8,CORIN,COX7B2,CWH43,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,NFXL1,NIPAL1,OCIAD1,OCIAD2,SLAIN2,SLC10A4,TEC,TXK,ZAR1"
TCGA.AG.A008.01A	4	46099171	56422697	423	-0.2708	NEUTRAL	NA	39	"ATP10D,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GSX2,KDR,KIT,LNX1,LRRC66,NFXL1,NIPAL1,OCIAD1,OCIAD2,PDCL2,PDGFRA,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SRD5A3,TEC,TMEM165,TXK,USP46,ZAR1"
TCGA.DM.A28M.01A	4	46125780	62863846	610	-0.0361	NEUTRAL	NA	56	"AASDH,ADGRL3,ARL9,ATP10D,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,ZAR1"
TCGA.AZ.6607	4	46316360	190921708	39491	0.0585	NEUTRAL	NA	524	Too-Many
TCGA.AG.A00C.01A	4	46388044	46995302	12	0.1574	NEUTRAL	NA	3	"COX7B2,GABRA2,GABRA4"
TCGA.AA.3488	4	46429908	49063478	578	-0.0072	NEUTRAL	NA	18	"ATP10D,CNGA1,COMMD8,CORIN,COX7B2,CWH43,FRYL,GABRA4,GABRB1,NFXL1,NIPAL1,OCIAD1,OCIAD2,SLAIN2,SLC10A4,TEC,TXK,ZAR1"
TCGA.F5.6811.01A	4	46675752	62225098	577	-0.0214	NEUTRAL	NA	53	"AASDH,ARL9,ATP10D,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA4,GABRB1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,ZAR1"
TCGA.AA.A02K.01A	4	46967021	70804820	864	0.0473	NEUTRAL	NA	78	"AASDH,ADGRL3,ARL9,ATP10D,CENPC,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,CSN1S1,CWH43,DCUN1D4,EPHA5,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA4,GABRB1,GNRHR,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,STAP1,SULT1B1,SULT1E1,TEC,TECRL,THEGL,TMEM165,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,TXK,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,USP46,YTHDC1,ZAR1"
TCGA.AA.3509.01A	4	46980995	62362943	576	0.1449	NEUTRAL	NA	53	"AASDH,ADGRL3,ARL9,ATP10D,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA4,GABRB1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,ZAR1"
TCGA.AZ.4684.01A	4	46980995	62362943	576	-0.2509	NEUTRAL	NA	53	"AASDH,ADGRL3,ARL9,ATP10D,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA4,GABRB1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,ZAR1"
TCGA.AA.A010.01A	4	46994798	48148282	111	0.358	NEUTRAL	NA	10	"ATP10D,CNGA1,COMMD8,CORIN,GABRA4,GABRB1,NFXL1,NIPAL1,TEC,TXK"
TCGA.AA.A01Q.01A	4	46994798	48485542	118	0.0935	NEUTRAL	NA	12	"ATP10D,CNGA1,COMMD8,CORIN,GABRA4,GABRB1,NFXL1,NIPAL1,SLAIN2,SLC10A4,TEC,TXK"
TCGA.AG.A00C.01A	4	47033607	47322114	4	-0.3797	NEUTRAL	NA	1	GABRB1
TCGA.AA.A00N.01A	4	47033607	47465544	12	-0.2069	NEUTRAL	NA	2	"COMMD8,GABRB1"
TCGA.AA.3844	4	47118656	56688102	1651	-0.147	NEUTRAL	NA	36	"ATP10D,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GABRB1,GSX2,KDR,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,OCIAD1,OCIAD2,PDCL2,PDGFRA,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SRD5A3,TEC,TMEM165,TXK,USP46,ZAR1"
TCGA.F4.6460	4	47272391	55004385	1048	0.0634	NEUTRAL	NA	28	"ATP10D,CHIC2,CNGA1,COMMD8,CORIN,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GABRB1,GSX2,LNX1,LRRC66,NFXL1,NIPAL1,OCIAD1,OCIAD2,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,TEC,TXK,USP46,ZAR1"
TCGA.AG.A00C.01A	4	47405288	47462112	7	0.2783	NEUTRAL	NA	2	"COMMD8,GABRB1"
TCGA.AA.3850	4	47449994	56688102	1558	-0.02765	NEUTRAL	NA	35	"ATP10D,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GSX2,KDR,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,OCIAD1,OCIAD2,PDCL2,PDGFRA,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SRD5A3,TEC,TMEM165,TXK,USP46,ZAR1"
TCGA.AA.3941	4	47455613	56688102	1553	0.0521	NEUTRAL	NA	35	"ATP10D,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GSX2,KDR,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,OCIAD1,OCIAD2,PDCL2,PDGFRA,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SRD5A3,TEC,TMEM165,TXK,USP46,ZAR1"
TCGA.AA.3982	4	47463844	54545847	832	0.1302	NEUTRAL	NA	25	"ATP10D,CNGA1,COMMD8,CORIN,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,LNX1,LRRC66,NFXL1,NIPAL1,OCIAD1,OCIAD2,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,TEC,TXK,USP46,ZAR1"
TCGA.AA.3811	4	47463844	58329382	2121	0.0931	NEUTRAL	NA	50	"AASDH,ARL9,ATP10D,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,ZAR1"
TCGA.AG.3909.01A	4	47514546	48486901	115	-0.0611	NEUTRAL	NA	9	"ATP10D,CNGA1,CORIN,NFXL1,NIPAL1,SLAIN2,SLC10A4,TEC,TXK"
TCGA.AG.A00C.01A	4	47514546	55973864	351	-0.1306	NEUTRAL	NA	29	"ATP10D,CHIC2,CNGA1,CORIN,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GSX2,KDR,KIT,LNX1,LRRC66,NFXL1,NIPAL1,OCIAD1,OCIAD2,PDGFRA,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,TEC,TXK,USP46,ZAR1"
TCGA.F4.6461	4	47633116	48506162	246	-0.4564	NEUTRAL	NA	10	"CNGA1,CORIN,FRYL,NFXL1,NIPAL1,SLAIN2,SLC10A4,TEC,TXK,ZAR1"
TCGA.AG.A01W.01A	4	47807254	47811064	4	0.2383	NEUTRAL	NA	1	CORIN
TCGA.AA.A00N.01A	4	47850153	48116293	47	0.3007	NEUTRAL	NA	4	"CNGA1,NFXL1,NIPAL1,TXK"
TCGA.AG.A01W.01A	4	47853381	47868083	6	-0.0226	NEUTRAL	NA	1	NFXL1
TCGA.AA.3712	4	48115733	190921708	39171	0.0236	NEUTRAL	NA	514	Too-Many
TCGA.AG.3906.01A	4	48143328	48502025	26	0.3093	NEUTRAL	NA	5	"FRYL,SLAIN2,SLC10A4,TEC,ZAR1"
TCGA.AA.A00N.01A	4	48151562	48485542	19	-0.338	NEUTRAL	NA	3	"SLAIN2,SLC10A4,TEC"
TCGA.AG.4009.01A	4	48165651	48485542	15	-0.4907	NEUTRAL	NA	3	"SLAIN2,SLC10A4,TEC"
TCGA.A6.2686	4	48179439	48181696	3	0.3012	NEUTRAL	NA	1	TEC
TCGA.AG.A01W.01A	4	48181690	48232430	20	0.1398	NEUTRAL	NA	1	TEC
TCGA.AG.A01W.01A	4	48236706	57492388	393	-0.2721	NEUTRAL	NA	37	"AASDH,ARL9,CEP135,CHIC2,CLOCK,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GSX2,KDR,KIAA1211,KIT,LNX1,LRRC66,NMU,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,PPAT,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SRD5A3,SRP72,TEC,THEGL,TMEM165,USP46,ZAR1"
TCGA.DC.4749	4	48338343	76812030	6772	0.0235	NEUTRAL	NA	122	Too-Many
TCGA.CK.4948.01B	4	48381710	111480756	2758	0.0338	NEUTRAL	NA	277	Too-Many
TCGA.AA.A00D.01A	4	48384548	54291989	92	-0.2997	NEUTRAL	NA	16	"CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,LRRC66,OCIAD1,OCIAD2,RASL11B,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,USP46,ZAR1"
TCGA.AG.3906.01A	4	48503599	55991329	240	-0.0926	NEUTRAL	NA	19	"CHIC2,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,FRYL,GSX2,KDR,KIT,LNX1,LRRC66,OCIAD1,OCIAD2,PDGFRA,RASL11B,SCFD2,SGCB,SPATA18,USP46"
TCGA.CK.5914.01A	4	48512047	48512832	2	-0.0347	NEUTRAL	NA	1	FRYL
TCGA.AA.A00N.01A	4	48514461	48516998	2	-0.4155	NEUTRAL	NA	1	FRYL
TCGA.AG.3909.01A	4	48514461	48887445	63	-0.0586	NEUTRAL	NA	3	"FRYL,OCIAD1,OCIAD2"
TCGA.AG.A016.01A	4	48516998	89602312	1863	-0.1414	NEUTRAL	NA	195	Too-Many
TCGA.AA.A00L.01A	4	48524870	48835361	5	0.3411	NEUTRAL	NA	2	"FRYL,OCIAD1"
TCGA.AG.4009.01A	4	48524870	52869340	90	-0.1184	NEUTRAL	NA	6	"CWH43,DCUN1D4,FRYL,LRRC66,OCIAD1,OCIAD2"
TCGA.F4.6461	4	48526638	70803764	5125	0.0294	NEUTRAL	NA	65	"AASDH,ADGRL3,ARL9,CENPC,CEP135,CHIC2,CLOCK,CSN1S1,CWH43,DCUN1D4,EPHA5,ERVMER34-1,EXOC1,FIP1L1,FRYL,GNRHR,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SPATA18,SPINK2,SRD5A3,SRP72,STAP1,SULT1B1,SULT1E1,TECRL,THEGL,TMEM165,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,USP46,YTHDC1"
TCGA.AA.A010.01A	4	48545797	48552571	7	-0.1769	NEUTRAL	NA	1	FRYL
TCGA.CK.5914.01A	4	48563438	48895984	41	0.0065	NEUTRAL	NA	3	"FRYL,OCIAD1,OCIAD2"
TCGA.AA.A010.01A	4	48597555	52863867	53	0.0385	NEUTRAL	NA	6	"CWH43,DCUN1D4,FRYL,LRRC66,OCIAD1,OCIAD2"
TCGA.AA.A00N.01A	4	48834571	48862684	8	0.2921	NEUTRAL	NA	1	OCIAD1
TCGA.AA.A01Q.01A	4	48834571	53728624	60	-0.0409	NEUTRAL	NA	10	"CWH43,DCUN1D4,ERVMER34-1,LRRC66,OCIAD1,OCIAD2,RASL11B,SGCB,SPATA18,USP46"
TCGA.AG.3611.01A	4	48835361	48906437	13	-0.1025	NEUTRAL	NA	2	"OCIAD1,OCIAD2"
TCGA.AA.A00F.01A	4	48895984	49009196	11	0.0929	NEUTRAL	NA	2	"CWH43,OCIAD2"
TCGA.AA.3697	4	48967888	106983603	15078	0.1537	NEUTRAL	NA	248	Too-Many
TCGA.AG.3611.01A	4	48988369	55604555	131	-0.4392	NEUTRAL	NA	15	"CHIC2,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,GSX2,KIT,LNX1,LRRC66,PDGFRA,RASL11B,SCFD2,SGCB,SPATA18,USP46"
TCGA.CK.5914.01A	4	48996609	52869340	24	0.3033	NEUTRAL	NA	3	"CWH43,DCUN1D4,LRRC66"
TCGA.AG.3909.01A	4	49000425	52890091	24	-0.0064	NEUTRAL	NA	4	"CWH43,DCUN1D4,LRRC66,SGCB"
TCGA.AA.A00F.01A	4	49019229	57333765	256	-0.305	NEUTRAL	NA	28	"AASDH,CEP135,CHIC2,CLOCK,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,GSX2,KDR,KIAA1211,KIT,LNX1,LRRC66,NMU,PAICS,PDCL2,PDGFRA,PPAT,RASL11B,SCFD2,SGCB,SPATA18,SRD5A3,SRP72,TMEM165,USP46"
TCGA.AG.A02G.01A	4	49052664	109588315	2408	0.0066	NEUTRAL	NA	258	Too-Many
TCGA.AA.3867	4	49057911	56600712	1154	0.1941	NEUTRAL	NA	21	"CHIC2,CLOCK,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,GSX2,KDR,KIT,LNX1,LRRC66,NMU,PDCL2,PDGFRA,RASL11B,SCFD2,SGCB,SPATA18,SRD5A3,TMEM165,USP46"
TCGA.BM.6198	4	49061140	80749972	8093	0.10285	NEUTRAL	NA	142	Too-Many
TCGA.AA.3679	4	49061140	112799629	16631	-0.0012	NEUTRAL	NA	272	Too-Many
TCGA.CM.6679	4	49061140	185121553	36932	0.02725	NEUTRAL	NA	479	Too-Many
TCGA.AA.3870	4	49061140	190921708	38992	-0.0637	NEUTRAL	NA	506	Too-Many
TCGA.AA.3511	4	49584108	53179842	114	-0.4647	NEUTRAL	NA	4	"DCUN1D4,LRRC66,SGCB,SPATA18"
TCGA.F4.6808	4	49584108	81238192	8199	0.0478	NEUTRAL	NA	144	Too-Many
TCGA.AY.5543	4	49584108	91254517	11027	0.0216	NEUTRAL	NA	198	Too-Many
TCGA.A6.2686	4	49584108	116888785	17720	0.2935	NEUTRAL	NA	283	Too-Many
TCGA.AA.3488	4	49584108	190921708	38975	-0.479	NEUTRAL	NA	505	Too-Many
TCGA.AA.3548	4	49584108	190921708	39013	-0.4759	NEUTRAL	NA	505	Too-Many
TCGA.AF.2692	4	49584108	190921708	39006	-0.403	NEUTRAL	NA	505	Too-Many
TCGA.CA.6719	4	49584108	190921708	38866	-0.3895	NEUTRAL	NA	505	Too-Many
TCGA.F5.6812	4	49584108	190921708	38914	-0.4125	NEUTRAL	NA	505	Too-Many
TCGA.AG.3893	4	52696791	91418247	11067	0.349	NEUTRAL	NA	198	Too-Many
TCGA.A6.5659	4	52696791	190921708	35219	0.2426	NEUTRAL	NA	505	Too-Many
TCGA.AG.3890	4	52698635	190921708	38864	0.1709	NEUTRAL	NA	505	Too-Many
TCGA.DM.A1D8	4	52699759	58810491	1946	0.0017	NEUTRAL	NA	35	"AASDH,ARL9,CEP135,CHIC2,CLOCK,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NMU,NOA1,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SPATA18,SPINK2,SRD5A3,SRP72,THEGL,TMEM165,USP46"
TCGA.A6.6648	4	52699759	190921708	39005	0.0128	NEUTRAL	NA	505	Too-Many
TCGA.AA.A01K.01A	4	52743877	84015818	1373	0.2066	NEUTRAL	NA	158	Too-Many
TCGA.CK.5914.01A	4	52883232	54294147	54	-0.4242	NEUTRAL	NA	8	"ERVMER34-1,FIP1L1,LRRC66,RASL11B,SCFD2,SGCB,SPATA18,USP46"
TCGA.AF.6672	4	52921453	72105087	5361	0.0136	NEUTRAL	NA	81	"AASDH,ADGRL3,AMBN,AMTN,ARL9,CABS1,CENPC,CEP135,CHIC2,CLOCK,CSN1S1,CSN2,CSN3,DCK,ENAM,EPHA5,ERVMER34-1,EXOC1,FDCSP,FIP1L1,GNRHR,GRSF1,GSX2,HOPX,HTN1,HTN3,IGFBP7,JCHAIN,KDR,KIAA1211,KIT,LNX1,MOB1B,MUC7,NMU,NOA1,ODAM,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,PROL1,PRR27,RASL11B,REST,RUFY3,SCFD2,SLC4A4,SMR3A,SMR3B,SPATA18,SPINK2,SRD5A3,SRP72,STAP1,STATH,SULT1B1,SULT1E1,TECRL,THEGL,TMEM165,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,USP46,UTP3,YTHDC1"
TCGA.AG.4009.01A	4	52935948	53728624	18	-0.0068	NEUTRAL	NA	4	"ERVMER34-1,RASL11B,SPATA18,USP46"
TCGA.AA.A010.01A	4	52935948	54139945	29	0.0349	NEUTRAL	NA	5	"ERVMER34-1,RASL11B,SCFD2,SPATA18,USP46"
TCGA.AG.3909.01A	4	52938036	53728624	17	0.0029	NEUTRAL	NA	4	"ERVMER34-1,RASL11B,SPATA18,USP46"
TCGA.AG.3902	4	53115605	83040341	8644	0.2872	NEUTRAL	NA	144	Too-Many
TCGA.D5.6533	4	53116590	53306860	51	0.0709	NEUTRAL	NA	0	None
TCGA.AA.3511	4	53184009	56386370	973	0.0133	NEUTRAL	NA	14	"CHIC2,CLOCK,ERVMER34-1,FIP1L1,GSX2,KDR,KIT,LNX1,PDGFRA,RASL11B,SCFD2,SRD5A3,TMEM165,USP46"
TCGA.AA.A01Q.01A	4	53729367	54011449	8	-0.4979	NEUTRAL	NA	2	"RASL11B,SCFD2"
TCGA.AG.4009.01A	4	53751877	54291989	18	-0.2227	NEUTRAL	NA	2	"FIP1L1,SCFD2"
TCGA.AA.A01Q.01A	4	54139945	62758327	272	0.116	NEUTRAL	NA	29	"AASDH,ADGRL3,ARL9,CEP135,CHIC2,CLOCK,EXOC1,FIP1L1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,NMU,NOA1,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,REST,SCFD2,SPINK2,SRD5A3,SRP72,THEGL,TMEM165"
TCGA.AG.3909.01A	4	54265880	54310156	7	-0.1408	NEUTRAL	NA	1	FIP1L1
TCGA.AG.4009.01A	4	54294147	54930302	24	0.025	NEUTRAL	NA	3	"CHIC2,FIP1L1,LNX1"
TCGA.AG.3909.01A	4	54319037	54879944	18	0.3355	NEUTRAL	NA	3	"CHIC2,FIP1L1,LNX1"
TCGA.AA.3685	4	54339477	190921708	38679	-0.1612	NEUTRAL	NA	496	Too-Many
TCGA.AA.3982	4	54550663	55302853	248	0.2077	NEUTRAL	NA	3	"CHIC2,GSX2,PDGFRA"
TCGA.A6.6140	4	54559737	61208515	2146	0.3125	NEUTRAL	NA	25	"AASDH,ARL9,CEP135,CHIC2,CLOCK,EXOC1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,NMU,NOA1,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,REST,SPINK2,SRD5A3,SRP72,THEGL,TMEM165"
TCGA.AA.A010.01A	4	54852769	57220844	175	-0.0515	NEUTRAL	NA	14	"AASDH,CEP135,CHIC2,CLOCK,EXOC1,GSX2,KDR,KIAA1211,KIT,NMU,PDCL2,PDGFRA,SRD5A3,TMEM165"
TCGA.AA.A00N.01A	4	54853051	55136783	13	0.0435	NEUTRAL	NA	3	"CHIC2,GSX2,PDGFRA"
TCGA.AG.3909.01A	4	55124862	55955524	44	0.1861	NEUTRAL	NA	3	"KDR,KIT,PDGFRA"
TCGA.AG.4009.01A	4	55124862	57686633	211	-0.0579	NEUTRAL	NA	19	"AASDH,ARL9,CEP135,CLOCK,EXOC1,HOPX,KDR,KIAA1211,KIT,NMU,PAICS,PDCL2,PDGFRA,PPAT,SPINK2,SRD5A3,SRP72,THEGL,TMEM165"
TCGA.AA.A02H.01A	4	55127220	55565779	22	0.1112	NEUTRAL	NA	2	"KIT,PDGFRA"
TCGA.AA.3982	4	55310311	56688102	470	0.1177	NEUTRAL	NA	7	"CLOCK,KDR,KIT,NMU,PDCL2,SRD5A3,TMEM165"
TCGA.CM.6172	4	55526961	55559313	18	0.0465	NEUTRAL	NA	1	KIT
TCGA.CM.6172	4	55563461	57527585	592	0.3494	NEUTRAL	NA	17	"AASDH,ARL9,CEP135,CLOCK,EXOC1,HOPX,KDR,KIAA1211,KIT,NMU,PAICS,PDCL2,PPAT,SRD5A3,SRP72,THEGL,TMEM165"
TCGA.AA.A02H.01A	4	55589708	55956076	19	0.105	NEUTRAL	NA	2	"KDR,KIT"
TCGA.AG.3909.01A	4	55955841	55976528	16	-0.1629	NEUTRAL	NA	1	KDR
TCGA.AA.A00N.01A	4	55961701	55973864	11	-0.2777	NEUTRAL	NA	1	KDR
TCGA.AG.A00C.01A	4	55976528	56277769	13	0.2352	NEUTRAL	NA	3	"KDR,SRD5A3,TMEM165"
TCGA.AA.A02H.01A	4	55976528	56348888	35	0.2041	NEUTRAL	NA	4	"CLOCK,KDR,SRD5A3,TMEM165"
TCGA.CK.5914.01A	4	55976528	56348888	37	-0.0466	NEUTRAL	NA	4	"CLOCK,KDR,SRD5A3,TMEM165"
TCGA.AG.A00Y.01A	4	55976528	57899309	190	-3.00E-04	NEUTRAL	NA	21	"AASDH,ARL9,CEP135,CLOCK,EXOC1,HOPX,IGFBP7,KDR,KIAA1211,NMU,NOA1,PAICS,PDCL2,POLR2B,PPAT,REST,SPINK2,SRD5A3,SRP72,THEGL,TMEM165"
TCGA.AG.3909.01A	4	55991329	56290658	9	-0.2252	NEUTRAL	NA	3	"KDR,SRD5A3,TMEM165"
TCGA.AA.A00N.01A	4	55991329	56329814	26	0.0328	NEUTRAL	NA	4	"CLOCK,KDR,SRD5A3,TMEM165"
TCGA.AG.3611.01A	4	56212467	68780279	252	-0.3937	NEUTRAL	NA	29	"AASDH,ADGRL3,ARL9,CENPC,CEP135,CLOCK,EPHA5,EXOC1,GNRHR,HOPX,IGFBP7,KIAA1211,NMU,NOA1,PAICS,PDCL2,POLR2B,PPAT,REST,SPINK2,SRD5A3,SRP72,STAP1,TECRL,THEGL,TMEM165,TMPRSS11A,TMPRSS11D,UBA6"
TCGA.AG.3906.01A	4	56277769	57677843	138	-0.0155	NEUTRAL	NA	15	"AASDH,ARL9,CEP135,CLOCK,EXOC1,HOPX,KIAA1211,NMU,PAICS,PDCL2,PPAT,SPINK2,SRP72,THEGL,TMEM165"
TCGA.AG.A00C.01A	4	56283201	56770501	54	-0.1298	NEUTRAL	NA	5	"CLOCK,EXOC1,NMU,PDCL2,TMEM165"
TCGA.AG.3909.01A	4	56291515	56348888	20	0.151	NEUTRAL	NA	2	"CLOCK,TMEM165"
TCGA.AF.3911	4	56298193	56334966	12	0.2899	NEUTRAL	NA	1	CLOCK
TCGA.AA.3511	4	56392812	139956969	22509	-0.4887	NEUTRAL	NA	315	Too-Many
TCGA.AA.A02H.01A	4	56422697	56734465	17	-0.1923	NEUTRAL	NA	3	"EXOC1,NMU,PDCL2"
TCGA.AG.A008.01A	4	56428544	56496501	12	-0.0027	NEUTRAL	NA	2	"NMU,PDCL2"
TCGA.AA.A00L.01A	4	56465287	62849073	141	-0.2843	NEUTRAL	NA	17	"AASDH,ADGRL3,ARL9,CEP135,EXOC1,HOPX,IGFBP7,KIAA1211,NMU,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.A00D.01A	4	56465287	65240814	148	-0.3185	NEUTRAL	NA	18	"AASDH,ADGRL3,ARL9,CEP135,EXOC1,HOPX,IGFBP7,KIAA1211,NMU,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,TECRL,THEGL"
TCGA.AF.3911	4	56519721	56656955	53	0.1515	NEUTRAL	NA	0	None
TCGA.CI.6621	4	56583589	75686504	5193	0.3609	NEUTRAL	NA	87	"AASDH,ADAMTS3,ADGRL3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,ARL9,BTC,CABS1,CENPC,CEP135,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPGN,EPHA5,EREG,EXOC1,FDCSP,GC,GNRHR,GRSF1,HOPX,HTN1,HTN3,IGFBP7,JCHAIN,KIAA1211,MOB1B,MTHFD2L,MUC7,NOA1,NPFFR2,ODAM,PAICS,PF4,PF4V1,POLR2B,PPAT,PPBP,PROL1,PRR27,RASSF6,REST,RUFY3,SLC4A4,SMR3A,SMR3B,SPINK2,SRP72,STAP1,STATH,SULT1B1,SULT1E1,TECRL,THEGL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AA.3867	4	56609539	56688102	31	0.1113	NEUTRAL	NA	0	None
TCGA.AF.3911	4	56663854	65071721	2357	-0.4147	NEUTRAL	NA	16	"AASDH,ADGRL3,ARL9,CEP135,EXOC1,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.3844	4	56715815	56780081	21	-0.177	NEUTRAL	NA	1	EXOC1
TCGA.AA.3941	4	56715815	56780081	21	0.0575	NEUTRAL	NA	1	EXOC1
TCGA.AA.3850	4	56715815	56781217	23	-0.20125	NEUTRAL	NA	1	EXOC1
TCGA.AA.3982	4	56715815	58072735	414	0.3326	NEUTRAL	NA	15	"AASDH,ARL9,CEP135,EXOC1,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.3867	4	56715815	58586133	666	0.2064	NEUTRAL	NA	15	"AASDH,ARL9,CEP135,EXOC1,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.A00N.01A	4	56724439	56737968	7	0.2198	NEUTRAL	NA	1	EXOC1
TCGA.AG.A008.01A	4	56724439	69362324	317	-0.2563	NEUTRAL	NA	28	"AASDH,ADGRL3,ARL9,CENPC,CEP135,EPHA5,EXOC1,GNRHR,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,STAP1,TECRL,THEGL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,YTHDC1"
TCGA.AA.3980.01A	4	56726570	159091349	3938	0.1009	NEUTRAL	NA	391	Too-Many
TCGA.CK.5914.01A	4	56730381	56770501	16	0.3622	NEUTRAL	NA	1	EXOC1
TCGA.AG.3909.01A	4	56734465	56770501	15	-0.0142	NEUTRAL	NA	1	EXOC1
TCGA.AA.A00N.01A	4	56765824	56770501	3	0.2794	NEUTRAL	NA	1	EXOC1
TCGA.AA.A02H.01A	4	56765824	57301474	58	-0.0128	NEUTRAL	NA	5	"AASDH,CEP135,EXOC1,KIAA1211,PPAT"
TCGA.AA.3844	4	56780460	57092128	73	0.0664	NEUTRAL	NA	2	"CEP135,KIAA1211"
TCGA.AA.3850	4	56783608	58110120	414	0.28945	NEUTRAL	NA	14	"AASDH,ARL9,CEP135,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AG.A00C.01A	4	56825794	57301474	51	-0.012	NEUTRAL	NA	4	"AASDH,CEP135,KIAA1211,PPAT"
TCGA.AA.A00N.01A	4	56830401	56847385	7	-0.3454	NEUTRAL	NA	1	CEP135
TCGA.CK.5914.01A	4	56835165	57164358	17	-0.0677	NEUTRAL	NA	2	"CEP135,KIAA1211"
TCGA.AG.3909.01A	4	56835165	57173661	18	0.0305	NEUTRAL	NA	2	"CEP135,KIAA1211"
TCGA.AA.A00N.01A	4	56885468	57164358	4	-0.2639	NEUTRAL	NA	2	"CEP135,KIAA1211"
TCGA.A6.A56B	4	56911057	59888094	995	0.3028	NEUTRAL	NA	13	"AASDH,ARL9,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.3844	4	57102385	58072735	316	0.0664	NEUTRAL	NA	13	"AASDH,ARL9,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.G4.6299	4	57143036	61448490	1399	-0.4619	NEUTRAL	NA	13	"AASDH,ARL9,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.A00N.01A	4	57180197	57217481	10	-0.3275	NEUTRAL	NA	2	"AASDH,KIAA1211"
TCGA.CK.5914.01A	4	57180197	57221356	14	-0.0273	NEUTRAL	NA	2	"AASDH,KIAA1211"
TCGA.AG.3909.01A	4	57193809	57273768	24	-0.2317	NEUTRAL	NA	3	"AASDH,KIAA1211,PPAT"
TCGA.AA.A00N.01A	4	57219533	57250199	8	0.2915	NEUTRAL	NA	1	AASDH
TCGA.AA.A017.01A	4	57237580	57872934	63	-0.4532	NEUTRAL	NA	11	"AASDH,ARL9,HOPX,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.A00N.01A	4	57261466	57302417	11	-0.4047	NEUTRAL	NA	2	"PAICS,PPAT"
TCGA.AG.A014.01A	4	57269229	57876922	55	0.3332	NEUTRAL	NA	10	"ARL9,HOPX,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.A02H.01A	4	57307842	57795990	33	-0.3478	NEUTRAL	NA	7	"ARL9,HOPX,PAICS,REST,SPINK2,SRP72,THEGL"
TCGA.AA.A00F.01A	4	57335782	57860532	36	0.0135	NEUTRAL	NA	8	"ARL9,HOPX,NOA1,POLR2B,REST,SPINK2,SRP72,THEGL"
TCGA.AA.3861.01A	4	57342751	69327488	235	0.027	NEUTRAL	NA	22	"ADGRL3,ARL9,CENPC,EPHA5,GNRHR,HOPX,IGFBP7,NOA1,POLR2B,REST,SPINK2,SRP72,STAP1,TECRL,THEGL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,YTHDC1"
TCGA.AA.3862.01A	4	57377424	69334530	226	-0.2829	NEUTRAL	NA	21	"ADGRL3,ARL9,CENPC,EPHA5,GNRHR,HOPX,IGFBP7,NOA1,POLR2B,REST,SPINK2,STAP1,TECRL,THEGL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,YTHDC1"
TCGA.AG.3909.01A	4	57514828	57834531	13	-0.494	NEUTRAL	NA	4	"HOPX,NOA1,REST,SPINK2"
TCGA.CM.6172	4	57528442	57550869	8	0.0614	NEUTRAL	NA	1	HOPX
TCGA.AG.A01W.01A	4	57534029	57547214	5	-0.1807	NEUTRAL	NA	1	HOPX
TCGA.CM.6172	4	57556630	190921708	37582	-0.4715	NEUTRAL	NA	475	Too-Many
TCGA.AG.A01W.01A	4	57577940	71501713	344	-0.1039	NEUTRAL	NA	47	"ADGRL3,AMBN,AMTN,CABS1,CENPC,CSN1S1,CSN2,CSN3,ENAM,EPHA5,FDCSP,GNRHR,HTN1,HTN3,IGFBP7,MUC7,NOA1,ODAM,POLR2B,PROL1,PRR27,REST,SMR3A,SMR3B,SPINK2,STAP1,STATH,SULT1B1,SULT1E1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,YTHDC1"
TCGA.A6.3810.01A	4	57676240	57861379	20	-0.1824	NEUTRAL	NA	4	"NOA1,POLR2B,REST,SPINK2"
TCGA.CM.6165.01A	4	57776847	57839977	10	-0.2805	NEUTRAL	NA	2	"NOA1,REST"
TCGA.AA.A010.01A	4	57829589	73205184	478	-0.0846	NEUTRAL	NA	55	"ADAMTS3,ADGRL3,AMBN,AMTN,CABS1,CENPC,CSN1S1,CSN2,CSN3,DCK,ENAM,EPHA5,FDCSP,GC,GNRHR,GRSF1,HTN1,HTN3,IGFBP7,JCHAIN,MOB1B,MUC7,NOA1,NPFFR2,ODAM,POLR2B,PROL1,PRR27,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AG.3906.01A	4	57839977	57852470	4	0.0507	NEUTRAL	NA	2	"NOA1,POLR2B"
TCGA.AG.3891.01A	4	57842566	57898544	25	0.1274	NEUTRAL	NA	3	"IGFBP7,NOA1,POLR2B"
TCGA.CM.6165.01A	4	57842566	190947494	4748	0.0776	NEUTRAL	NA	474	Too-Many
TCGA.AG.3909.01A	4	57861379	68383822	87	0.0165	NEUTRAL	NA	6	"ADGRL3,CENPC,EPHA5,IGFBP7,POLR2B,TECRL"
TCGA.AA.A00F.01A	4	57861379	68489802	68	-0.4215	NEUTRAL	NA	8	"ADGRL3,CENPC,EPHA5,IGFBP7,POLR2B,STAP1,TECRL,UBA6"
TCGA.A6.3810.01A	4	57865733	71660460	381	0.1965	NEUTRAL	NA	47	"ADGRL3,AMBN,AMTN,CABS1,CENPC,CSN1S1,CSN2,CSN3,ENAM,EPHA5,FDCSP,GNRHR,HTN1,HTN3,IGFBP7,JCHAIN,MUC7,ODAM,POLR2B,PROL1,PRR27,RUFY3,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.CK.5914.01A	4	57871363	68396486	90	0.3088	NEUTRAL	NA	6	"ADGRL3,CENPC,EPHA5,IGFBP7,POLR2B,TECRL"
TCGA.AG.4009.01A	4	57871363	68471968	99	-0.1225	NEUTRAL	NA	7	"ADGRL3,CENPC,EPHA5,IGFBP7,POLR2B,STAP1,TECRL"
TCGA.AG.3906.01A	4	57872934	100829816	1776	-0.058	NEUTRAL	NA	191	Too-Many
TCGA.AA.A017.01A	4	57876479	123222437	2670	0.0846	NEUTRAL	NA	273	Too-Many
TCGA.AA.A02H.01A	4	57876922	146478911	3161	0.2114	NEUTRAL	NA	329	Too-Many
TCGA.AA.A02E.01A	4	57876922	183659526	4205	-0.2024	NEUTRAL	NA	435	Too-Many
TCGA.AG.A014.01A	4	57881621	57899309	14	-0.299	NEUTRAL	NA	2	"IGFBP7,POLR2B"
TCGA.AG.A00C.01A	4	57883162	71690965	372	-0.1938	NEUTRAL	NA	48	"ADGRL3,AMBN,AMTN,CABS1,CENPC,CSN1S1,CSN2,CSN3,ENAM,EPHA5,FDCSP,GNRHR,GRSF1,HTN1,HTN3,IGFBP7,JCHAIN,MUC7,ODAM,POLR2B,PROL1,PRR27,RUFY3,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AG.3891.01A	4	57899309	128841768	2829	-0.2151	NEUTRAL	NA	287	Too-Many
TCGA.AA.3941	4	57948822	58073141	47	0.1783	NEUTRAL	NA	1	IGFBP7
TCGA.D5.6532	4	57962466	190921708	37404	0.0028	NEUTRAL	NA	471	Too-Many
TCGA.AA.3844	4	58073141	58586133	252	-0.3191	NEUTRAL	NA	0	None
TCGA.AA.3982	4	58076315	58148599	35	0.3368	NEUTRAL	NA	0	None
TCGA.AA.3941	4	58081172	58210939	78	0.0313	NEUTRAL	NA	0	None
TCGA.AA.3850	4	58117076	58561996	218	-0.31135	NEUTRAL	NA	0	None
TCGA.AA.3982	4	58151425	58381543	146	0.0041	NEUTRAL	NA	0	None
TCGA.AA.3941	4	58212021	58565439	159	-0.3336	NEUTRAL	NA	0	None
TCGA.AA.3811	4	58331632	60531062	681	-0.3688	NEUTRAL	NA	0	None
TCGA.AA.3982	4	58406404	68031046	2652	-0.4734	NEUTRAL	NA	3	"ADGRL3,EPHA5,TECRL"
TCGA.AA.3867	4	58592201	68006894	2565	-0.1988	NEUTRAL	NA	3	"ADGRL3,EPHA5,TECRL"
TCGA.DY.A1DC	4	58799872	59713039	258	-0.0028	NEUTRAL	NA	0	None
TCGA.DM.A1D8	4	58830160	84978574	7391	0.0317	NEUTRAL	NA	129	Too-Many
TCGA.D5.6923	4	59375581	91287151	8987	-0.0034	NEUTRAL	NA	163	Too-Many
TCGA.CM.5862	4	59375595	169379625	29615	-0.1585	NEUTRAL	NA	405	Too-Many
TCGA.AG.3732	4	59674051	60021920	104	0.1173	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	59834737	61412807	467	-0.0361	NEUTRAL	NA	0	None
TCGA.A6.A56B	4	59889960	190921708	36529	-0.4273	NEUTRAL	NA	470	Too-Many
TCGA.EI.7004	4	60331534	64174875	960	-0.3765	NEUTRAL	NA	1	ADGRL3
TCGA.AA.A01Z	4	60403333	64125167	938	-0.0395	NEUTRAL	NA	1	ADGRL3
TCGA.A6.2675	4	60855078	82321878	5878	-0.1041	NEUTRAL	NA	112	Too-Many
TCGA.RU.A8FL	4	61107363	61273345	45	0.2797	NEUTRAL	NA	0	None
TCGA.AG.3732	4	61129135	65146699	947	0.059	NEUTRAL	NA	2	"ADGRL3,TECRL"
TCGA.A6.6140	4	61209125	169529801	29263	-0.0761	NEUTRAL	NA	406	Too-Many
TCGA.RU.A8FL	4	61276746	70547252	2384	-0.4633	NEUTRAL	NA	23	"ADGRL3,CENPC,EPHA5,GNRHR,STAP1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,YTHDC1"
TCGA.AF.6136	4	61346225	61613141	88	0.0281	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	61436849	66185197	1155	0.0143	NEUTRAL	NA	2	"ADGRL3,TECRL"
TCGA.G4.6299	4	61471079	152749594	24160	0.0171	NEUTRAL	NA	347	Too-Many
TCGA.AF.6136	4	61614650	61921233	80	-0.3646	NEUTRAL	NA	0	None
TCGA.AF.6136	4	61921855	62763474	191	0.1063	NEUTRAL	NA	1	ADGRL3
TCGA.G4.6322	4	62268152	76444182	3695	0.0379	NEUTRAL	NA	75	"ADAMTS3,ADGRL3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,BTC,CABS1,CENPC,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPGN,EPHA5,EREG,FDCSP,GC,GNRHR,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NPFFR2,ODAM,PARM1,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RCHY1,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TECRL,THAP6,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.F5.6811.01A	4	62278874	64957424	32	-0.4125	NEUTRAL	NA	1	ADGRL3
TCGA.AF.6136	4	62766233	72356606	2446	-0.2438	NEUTRAL	NA	49	"ADGRL3,AMBN,AMTN,CABS1,CENPC,CSN1S1,CSN2,CSN3,DCK,ENAM,EPHA5,FDCSP,GNRHR,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MUC7,ODAM,PROL1,PRR27,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AA.A01Q.01A	4	62935809	66233062	22	-0.3257	NEUTRAL	NA	3	"ADGRL3,EPHA5,TECRL"
TCGA.EI.6510	4	63229193	190921708	35797	-0.0078	NEUTRAL	NA	469	Too-Many
TCGA.F5.6863	4	63957404	74978339	2860	-0.0159	NEUTRAL	NA	66	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,CABS1,CENPC,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPHA5,FDCSP,GC,GNRHR,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MUC7,NPFFR2,ODAM,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.CM.5349	4	64108132	85811620	6250	-0.3945	NEUTRAL	NA	131	Too-Many
TCGA.EI.6514	4	64151912	190921708	35604	-0.0437	NEUTRAL	NA	469	Too-Many
TCGA.DM.A1D9	4	64154566	98243378	9565	-0.0267	NEUTRAL	NA	170	Too-Many
TCGA.D5.6931	4	64154566	190921708	35568	0.02	NEUTRAL	NA	469	Too-Many
TCGA.DM.A1DA	4	64154566	190921708	35655	-0.1465	NEUTRAL	NA	469	Too-Many
TCGA.NH.A5IV	4	64154566	190921708	35585	-0.0201	NEUTRAL	NA	469	Too-Many
TCGA.AA.A01Z	4	64173619	86490362	6423	0.0153	NEUTRAL	NA	132	Too-Many
TCGA.EI.7004	4	64215765	68673582	1258	-0.0284	NEUTRAL	NA	6	"CENPC,EPHA5,GNRHR,STAP1,TECRL,UBA6"
TCGA.AA.3955	4	64259390	190921708	35626	-0.1248	NEUTRAL	NA	469	Too-Many
TCGA.A6.2671	4	64867646	158392733	25162	0.0139	NEUTRAL	NA	374	Too-Many
TCGA.AG.3732	4	65170414	190921708	35363	-0.4985	NEUTRAL	NA	469	Too-Many
TCGA.AF.3911	4	65797232	70330170	1181	-0.3939	NEUTRAL	NA	18	"CENPC,EPHA5,GNRHR,STAP1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B7,YTHDC1"
TCGA.F5.6811.01A	4	65872380	65901284	6	0.1316	NEUTRAL	NA	0	None
TCGA.DY.A1H8	4	65880274	190921708	35228	0.0033	NEUTRAL	NA	468	Too-Many
TCGA.F5.6811.01A	4	65913303	70012922	176	-0.2796	NEUTRAL	NA	16	"CENPC,EPHA5,GNRHR,STAP1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A3,UGT2B10,UGT2B15,UGT2B17,UGT2B7,YTHDC1"
TCGA.DY.A1DC	4	66201633	75507710	2415	0.0277	NEUTRAL	NA	69	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,CABS1,CENPC,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPGN,EPHA5,EREG,FDCSP,GC,GNRHR,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NPFFR2,ODAM,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.G4.6628	4	66227799	80688395	4187	-0.423	NEUTRAL	NA	104	Too-Many
TCGA.AA.A01Q.01A	4	66242649	68484663	19	0.1235	NEUTRAL	NA	4	"CENPC,EPHA5,STAP1,UBA6"
TCGA.DM.A28M.01A	4	66242649	68484663	39	0.0891	NEUTRAL	NA	4	"CENPC,EPHA5,STAP1,UBA6"
TCGA.AA.A00L.01A	4	66509033	68489802	15	-0.4138	NEUTRAL	NA	4	"CENPC,EPHA5,STAP1,UBA6"
TCGA.AA.A00D.01A	4	66535253	68610264	44	-0.3515	NEUTRAL	NA	5	"CENPC,EPHA5,GNRHR,STAP1,UBA6"
TCGA.AZ.4684.01A	4	66535253	69403342	124	0.1228	NEUTRAL	NA	12	"CENPC,EPHA5,GNRHR,STAP1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2B17,YTHDC1"
TCGA.AY.4070	4	66694326	190921708	34805	-0.1099	NEUTRAL	NA	467	Too-Many
TCGA.AF.2693	4	67500647	76648414	2378	0.0244	NEUTRAL	NA	75	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,BTC,C4orf26,CABS1,CDKL2,CENPC,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPGN,EREG,FDCSP,G3BP2,GC,GNRHR,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NPFFR2,ODAM,PARM1,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RCHY1,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,THAP6,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AA.3811	4	67733708	90819406	6661	-0.2471	NEUTRAL	NA	159	Too-Many
TCGA.AA.3867	4	68007387	88714717	5922	0.1061	NEUTRAL	NA	142	Too-Many
TCGA.AA.3982	4	68049002	73495040	1334	-0.2049	NEUTRAL	NA	49	"ADAMTS3,AMBN,AMTN,CABS1,CENPC,CSN1S1,CSN2,CSN3,DCK,ENAM,FDCSP,GC,GNRHR,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MUC7,NPFFR2,ODAM,PROL1,PRR27,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AA.3941	4	68055576	76444182	2155	-0.3953	NEUTRAL	NA	72	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,BTC,CABS1,CENPC,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPGN,EREG,FDCSP,GC,GNRHR,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NPFFR2,ODAM,PARM1,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RCHY1,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,THAP6,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AA.3844	4	68176105	108837808	11011	-0.3124	NEUTRAL	NA	214	Too-Many
TCGA.AG.A014.01A	4	68338292	71672196	302	-0.2571	NEUTRAL	NA	42	"AMBN,AMTN,CABS1,CENPC,CSN1S1,CSN2,CSN3,ENAM,FDCSP,GNRHR,HTN1,HTN3,JCHAIN,MUC7,ODAM,PROL1,PRR27,RUFY3,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AG.3909.01A	4	68384888	68424476	6	-0.4564	NEUTRAL	NA	2	"CENPC,STAP1"
TCGA.CK.5914.01A	4	68410964	68492031	16	-0.1552	NEUTRAL	NA	3	"CENPC,STAP1,UBA6"
TCGA.AG.3909.01A	4	68436741	68484663	9	-0.065	NEUTRAL	NA	2	"STAP1,UBA6"
TCGA.AA.A01Q.01A	4	68488500	68490664	4	-0.2764	NEUTRAL	NA	1	UBA6
TCGA.AA.A00F.01A	4	68490664	68514734	14	0.0322	NEUTRAL	NA	1	UBA6
TCGA.DM.A28M.01A	4	68496118	70599829	157	0.1469	NEUTRAL	NA	19	"GNRHR,SULT1B1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,YTHDC1"
TCGA.AA.A01Q.01A	4	68514734	106967676	1590	0.0887	NEUTRAL	NA	207	Too-Many
TCGA.CK.5914.01A	4	68527849	68708221	23	0.2875	NEUTRAL	NA	3	"GNRHR,TMPRSS11D,UBA6"
TCGA.AA.A00F.01A	4	68527849	69189803	62	-0.36	NEUTRAL	NA	7	"GNRHR,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11F,UBA6,YTHDC1"
TCGA.AG.4009.01A	4	68539368	70599829	137	-0.0469	NEUTRAL	NA	19	"GNRHR,SULT1B1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,YTHDC1"
TCGA.AG.3909.01A	4	68566701	68708221	11	0.0922	NEUTRAL	NA	3	"GNRHR,TMPRSS11D,UBA6"
TCGA.EI.7004	4	68675664	125102344	15288	-0.3678	NEUTRAL	NA	272	Too-Many
TCGA.AG.3909.01A	4	68719759	68788445	7	-0.4318	NEUTRAL	NA	2	"TMPRSS11A,TMPRSS11D"
TCGA.CK.5914.01A	4	68719759	69094923	31	-0.2162	NEUTRAL	NA	4	"TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11F"
TCGA.AG.3909.01A	4	68789765	68829035	6	0.0185	NEUTRAL	NA	1	TMPRSS11A
TCGA.AG.3611.01A	4	68789765	77020028	490	-0.3657	NEUTRAL	NA	78	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,ART3,BTC,C4orf26,CABS1,CDKL2,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL10,CXCL11,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,DCK,ENAM,EPGN,EREG,FDCSP,G3BP2,GC,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NAAA,NPFFR2,ODAM,PARM1,PF4,PF4V1,PPBP,PPEF2,PROL1,PRR27,RASSF6,RCHY1,RUFY3,SDAD1,SLC4A4,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,THAP6,TMPRSS11A,TMPRSS11B,TMPRSS11E,TMPRSS11F,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,USO1,UTP3,YTHDC1"
TCGA.AG.3909.01A	4	68919580	68939592	8	-0.4638	NEUTRAL	NA	1	TMPRSS11F
TCGA.AG.3909.01A	4	68956192	69188420	18	-0.007	NEUTRAL	NA	3	"TMPRSS11B,TMPRSS11F,YTHDC1"
TCGA.CK.5914.01A	4	69096873	69362324	29	0.2743	NEUTRAL	NA	3	"TMPRSS11B,TMPRSS11E,YTHDC1"
TCGA.AG.3909.01A	4	69189803	69215361	8	-0.4704	NEUTRAL	NA	1	YTHDC1
TCGA.AA.A00F.01A	4	69195722	69203949	6	-0.0043	NEUTRAL	NA	1	YTHDC1
TCGA.AA.A00F.01A	4	69215361	73414148	234	-0.3669	NEUTRAL	NA	41	"ADAMTS3,AMBN,AMTN,CABS1,CSN1S1,CSN2,CSN3,DCK,ENAM,FDCSP,GC,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MUC7,NPFFR2,ODAM,PROL1,PRR27,RUFY3,SLC4A4,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,TMPRSS11E,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AG.3909.01A	4	69313137	69816800	36	0.1247	NEUTRAL	NA	5	"TMPRSS11E,UGT2A3,UGT2B10,UGT2B15,UGT2B17"
TCGA.AA.A01C.01A	4	69343048	69978333	37	0.2013	NEUTRAL	NA	6	"TMPRSS11E,UGT2A3,UGT2B10,UGT2B15,UGT2B17,UGT2B7"
TCGA.AG.A011.01A	4	69512771	75316048	388	-0.0508	NEUTRAL	NA	57	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,CABS1,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPGN,EREG,FDCSP,GC,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NPFFR2,ODAM,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RUFY3,SLC4A4,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B28,UGT2B4,UGT2B7,UTP3"
TCGA.AG.A008.01A	4	69512771	99997848	1468	-0.2643	NEUTRAL	NA	163	Too-Many
TCGA.AA.A01F.01A	4	69519705	69795489	10	-0.0719	NEUTRAL	NA	3	"UGT2A3,UGT2B10,UGT2B15"
TCGA.AA.A01T	4	69659737	190921708	34190	0.0232	NEUTRAL	NA	455	Too-Many
TCGA.AA.A01F.01A	4	69796237	74903753	326	-0.3698	NEUTRAL	NA	51	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,CABS1,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,FDCSP,GC,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MUC7,NPFFR2,ODAM,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RUFY3,SLC4A4,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B28,UGT2B4,UGT2B7,UTP3"
TCGA.CK.5914.01A	4	69962191	69978333	8	-0.225	NEUTRAL	NA	1	UGT2B7
TCGA.AG.3909.01A	4	70066107	70360827	18	0.1459	NEUTRAL	NA	3	"UGT2B11,UGT2B28,UGT2B4"
TCGA.F5.6811.01A	4	70100696	70194835	11	0.2898	NEUTRAL	NA	1	UGT2B28
TCGA.AA.A01C.01A	4	70346302	70596199	16	0.0551	NEUTRAL	NA	4	"SULT1B1,UGT2A1,UGT2A2,UGT2B4"
TCGA.AA.3862.01A	4	70352271	88416096	1133	-0.1668	NEUTRAL	NA	123	Too-Many
TCGA.F5.6811.01A	4	70380891	72550978	163	-0.2422	NEUTRAL	NA	29	"AMBN,AMTN,CABS1,CSN1S1,CSN2,CSN3,DCK,ENAM,FDCSP,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MUC7,ODAM,PROL1,PRR27,RUFY3,SLC4A4,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,UGT2A1,UGT2A2,UGT2B4,UTP3"
TCGA.AG.3909.01A	4	70455108	70599829	11	-0.3172	NEUTRAL	NA	3	"SULT1B1,UGT2A1,UGT2A2"
TCGA.CK.5914.01A	4	70460188	70599829	10	-0.0429	NEUTRAL	NA	3	"SULT1B1,UGT2A1,UGT2A2"
TCGA.AA.3861.01A	4	70460188	76721457	405	0.1729	NEUTRAL	NA	58	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,BTC,C4orf26,CABS1,CDKL2,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPGN,EREG,FDCSP,G3BP2,GC,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NPFFR2,ODAM,PARM1,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RCHY1,RUFY3,SLC4A4,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,THAP6,UGT2A1,UGT2A2,USO1,UTP3"
TCGA.AA.A01C.01A	4	70599102	70798203	13	-0.4619	NEUTRAL	NA	3	"CSN1S1,SULT1B1,SULT1E1"
TCGA.CK.5914.01A	4	70707664	70804813	15	-0.1159	NEUTRAL	NA	2	"CSN1S1,SULT1E1"
TCGA.AG.3909.01A	4	70707664	70921154	35	-0.3049	NEUTRAL	NA	6	"CSN1S1,CSN2,HTN1,HTN3,STATH,SULT1E1"
TCGA.AG.4009.01A	4	70707664	71689974	113	-0.056	NEUTRAL	NA	22	"AMBN,AMTN,CABS1,CSN1S1,CSN2,CSN3,ENAM,FDCSP,GRSF1,HTN1,HTN3,JCHAIN,MUC7,ODAM,PROL1,PRR27,RUFY3,SMR3A,SMR3B,STATH,SULT1E1,UTP3"
TCGA.F4.6461	4	70803873	73889387	831	-0.3134	NEUTRAL	NA	27	"ADAMTS3,AMBN,AMTN,CABS1,CSN1S1,CSN2,CSN3,DCK,ENAM,FDCSP,GC,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MUC7,NPFFR2,ODAM,PROL1,PRR27,RUFY3,SLC4A4,SMR3A,SMR3B,STATH,UTP3"
TCGA.AA.A02K.01A	4	70808209	77940280	525	0.0485	NEUTRAL	NA	70	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,ART3,BTC,C4orf26,CABS1,CCDC158,CDKL2,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL10,CXCL11,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,DCK,ENAM,EPGN,EREG,FAM47E,FAM47E-STBD1,FDCSP,G3BP2,GC,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NAAA,NPFFR2,NUP54,ODAM,PARM1,PF4,PF4V1,PPBP,PPEF2,PROL1,PRR27,RASSF6,RCHY1,RUFY3,SCARB2,SDAD1,SEPT11,SHROOM3,SLC4A4,SMR3A,SMR3B,SOWAHB,STATH,STBD1,THAP6,USO1,UTP3"
TCGA.AA.3815.01A	4	70808217	190862099	4420	-0.0672	NEUTRAL	NA	445	Too-Many
TCGA.CK.4952.01A	4	70839402	191140813	4444	-0.1998	NEUTRAL	NA	444	Too-Many
TCGA.AA.A01C.01A	4	70896387	71024015	9	-0.4274	NEUTRAL	NA	3	"HTN1,HTN3,PRR27"
TCGA.AG.3909.01A	4	71020022	71690965	81	0.1583	NEUTRAL	NA	16	"AMBN,AMTN,CABS1,CSN3,ENAM,FDCSP,GRSF1,JCHAIN,MUC7,ODAM,PROL1,PRR27,RUFY3,SMR3A,SMR3B,UTP3"
TCGA.DM.A28M.01A	4	71114668	104106906	1676	0.0315	NEUTRAL	NA	170	Too-Many
TCGA.AF.3911	4	71237276	73625272	584	-0.4361	NEUTRAL	NA	16	"ADAMTS3,AMBN,AMTN,DCK,ENAM,GC,GRSF1,JCHAIN,MOB1B,MUC7,NPFFR2,PROL1,RUFY3,SLC4A4,SMR3B,UTP3"
TCGA.AZ.4684.01A	4	71255343	82125719	680	-0.133	NEUTRAL	NA	76	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,ANTXR2,ANXA3,AREG,ART3,BMP2K,BMP3,BTC,C4orf22,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CNOT6L,COX18,CXCL1,CXCL10,CXCL11,CXCL13,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,DCK,ENAM,EPGN,EREG,FAM47E,FAM47E-STBD1,FGF5,FRAS1,G3BP2,GC,GK2,GRSF1,JCHAIN,MOB1B,MRPL1,MTHFD2L,MUC7,NAA11,NAAA,NPFFR2,NUP54,PAQR3,PARM1,PF4,PF4V1,PPBP,PPEF2,PRDM8,PRKG2,PROL1,RASSF6,RCHY1,RUFY3,SCARB2,SDAD1,SEPT11,SHROOM3,SLC4A4,SMR3B,SOWAHB,STBD1,THAP6,USO1,UTP3"
TCGA.AA.3509.01A	4	71275070	71888051	71	-0.0465	NEUTRAL	NA	11	"AMBN,AMTN,DCK,ENAM,GRSF1,JCHAIN,MOB1B,MUC7,PROL1,RUFY3,UTP3"
TCGA.AA.A01C.01A	4	71384440	71672196	51	-0.2499	NEUTRAL	NA	6	"AMBN,AMTN,ENAM,JCHAIN,RUFY3,UTP3"
TCGA.AA.A00L.01A	4	71500098	71892331	42	-0.2809	NEUTRAL	NA	7	"DCK,ENAM,GRSF1,JCHAIN,MOB1B,RUFY3,UTP3"
TCGA.AG.A01W.01A	4	71502884	72063680	43	-0.4299	NEUTRAL	NA	8	"DCK,ENAM,GRSF1,JCHAIN,MOB1B,RUFY3,SLC4A4,UTP3"
TCGA.CK.5914.01A	4	71507693	71672196	27	0.0336	NEUTRAL	NA	4	"ENAM,JCHAIN,RUFY3,UTP3"
TCGA.AA.A00Q.01A	4	71507693	71892331	38	-0.299	NEUTRAL	NA	7	"DCK,ENAM,GRSF1,JCHAIN,MOB1B,RUFY3,UTP3"
TCGA.AA.A00D.01A	4	71634223	72120905	28	-0.3048	NEUTRAL	NA	5	"DCK,GRSF1,MOB1B,RUFY3,SLC4A4"
TCGA.A6.3810.01A	4	71665794	71705140	13	-0.2385	NEUTRAL	NA	2	"GRSF1,RUFY3"
TCGA.AG.A00C.01A	4	71691792	71863743	13	0.2089	NEUTRAL	NA	3	"DCK,GRSF1,MOB1B"
TCGA.AG.A014.01A	4	71693522	88731716	991	-0.2073	NEUTRAL	NA	101	Too-Many
TCGA.A6.3810.01A	4	71768160	83292663	644	0.1882	NEUTRAL	NA	68	"ADAMTS3,AFM,AFP,ALB,ANKRD17,ANTXR2,ANXA3,AREG,ART3,BMP2K,BMP3,BTC,C4orf22,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CNOT6L,COX18,CXCL1,CXCL10,CXCL11,CXCL13,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,DCK,EPGN,EREG,FAM47E,FAM47E-STBD1,FGF5,FRAS1,G3BP2,GC,GK2,HNRNPD,MOB1B,MRPL1,MTHFD2L,NAA11,NAAA,NPFFR2,NUP54,PAQR3,PARM1,PF4,PF4V1,PPBP,PPEF2,PRDM8,PRKG2,RASGEF1B,RASSF6,RCHY1,SCARB2,SDAD1,SEPT11,SHROOM3,SLC4A4,SOWAHB,STBD1,THAP6,USO1"
TCGA.AG.4009.01A	4	71824569	74864227	186	-0.0136	NEUTRAL	NA	19	"ADAMTS3,AFM,AFP,ALB,ANKRD17,COX18,CXCL1,CXCL5,CXCL6,CXCL8,DCK,GC,MOB1B,NPFFR2,PF4,PF4V1,PPBP,RASSF6,SLC4A4"
TCGA.A6.3808.01A	4	71840818	76522102	236	0.3376	NEUTRAL	NA	31	"ADAMTS3,AFM,AFP,ALB,ANKRD17,AREG,BTC,C4orf26,CDKL2,COX18,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,EPGN,EREG,GC,MOB1B,MTHFD2L,NPFFR2,PARM1,PF4,PF4V1,PPBP,RASSF6,RCHY1,SLC4A4,THAP6"
TCGA.AG.A00C.01A	4	71888051	77987355	404	-0.125	NEUTRAL	NA	49	"ADAMTS3,AFM,AFP,ALB,ANKRD17,AREG,ART3,BTC,C4orf26,CCDC158,CCNI,CDKL2,COX18,CXCL1,CXCL10,CXCL11,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,DCK,EPGN,EREG,FAM47E,FAM47E-STBD1,G3BP2,GC,MTHFD2L,NAAA,NPFFR2,NUP54,PARM1,PF4,PF4V1,PPBP,PPEF2,RASSF6,RCHY1,SCARB2,SDAD1,SEPT11,SHROOM3,SLC4A4,SOWAHB,STBD1,THAP6,USO1"
TCGA.AA.A01C.01A	4	71891486	72316868	13	-0.0366	NEUTRAL	NA	2	"DCK,SLC4A4"
TCGA.AG.A01W.01A	4	72066511	73382812	55	-0.1059	NEUTRAL	NA	4	"ADAMTS3,GC,NPFFR2,SLC4A4"
TCGA.AG.3909.01A	4	72102269	73414148	61	0.1294	NEUTRAL	NA	4	"ADAMTS3,GC,NPFFR2,SLC4A4"
TCGA.AF.6672	4	72116127	72138969	14	-0.1662	NEUTRAL	NA	1	SLC4A4
TCGA.AF.6672	4	72139159	72199787	21	-0.5035	NEUTRAL	NA	1	SLC4A4
TCGA.AF.6672	4	72220671	77198790	1392	0.0128	NEUTRAL	NA	42	"ADAMTS3,AFM,AFP,ALB,ANKRD17,AREG,ART3,BTC,C4orf26,CDKL2,COX18,CXCL1,CXCL10,CXCL11,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,EPGN,EREG,FAM47E,FAM47E-STBD1,G3BP2,GC,MTHFD2L,NAAA,NPFFR2,NUP54,PARM1,PF4,PF4V1,PPBP,PPEF2,RASSF6,RCHY1,SCARB2,SDAD1,SLC4A4,THAP6,USO1"
TCGA.AF.6136	4	72360477	75089773	727	0.0879	NEUTRAL	NA	20	"ADAMTS3,AFM,AFP,ALB,ANKRD17,COX18,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,GC,MTHFD2L,NPFFR2,PF4,PF4V1,PPBP,RASSF6,SLC4A4"
TCGA.F5.6811.01A	4	72557272	72652352	13	0.0746	NEUTRAL	NA	1	GC
TCGA.AA.A01C.01A	4	72611811	73164012	21	0.0129	NEUTRAL	NA	3	"ADAMTS3,GC,NPFFR2"
TCGA.F5.6811.01A	4	72830675	123458705	2344	-0.3323	NEUTRAL	NA	223	Too-Many
TCGA.AA.A01C.01A	4	73184277	190947494	4108	-0.228	NEUTRAL	NA	420	Too-Many
TCGA.AG.A01W.01A	4	73403116	73653249	10	-0.0373	NEUTRAL	NA	1	ADAMTS3
TCGA.AA.A00F.01A	4	73433008	73942610	9	0.0468	NEUTRAL	NA	3	"ADAMTS3,ANKRD17,COX18"
TCGA.AA.3509.01A	4	73433008	73984368	22	-0.1674	NEUTRAL	NA	3	"ADAMTS3,ANKRD17,COX18"
TCGA.AA.A00D.01A	4	73433008	78873616	297	-0.5059	NEUTRAL	NA	49	"ADAMTS3,AFM,AFP,ALB,ANKRD17,AREG,ART3,BTC,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CNOT6L,COX18,CXCL1,CXCL10,CXCL11,CXCL13,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,EPGN,EREG,FAM47E,FAM47E-STBD1,G3BP2,MRPL1,MTHFD2L,NAAA,NUP54,PARM1,PF4,PF4V1,PPBP,PPEF2,RASSF6,RCHY1,SCARB2,SDAD1,SEPT11,SHROOM3,SOWAHB,STBD1,THAP6,USO1"
TCGA.AA.3982	4	73496033	90819406	5220	0.0757	NEUTRAL	NA	110	Too-Many
TCGA.F4.6461	4	73899976	190921708	33032	0.0236	NEUTRAL	NA	418	Too-Many
TCGA.AA.A00L.01A	4	73923793	78806385	294	-0.484	NEUTRAL	NA	48	"AFM,AFP,ALB,ANKRD17,AREG,ART3,BTC,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CNOT6L,COX18,CXCL1,CXCL10,CXCL11,CXCL13,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,EPGN,EREG,FAM47E,FAM47E-STBD1,G3BP2,MRPL1,MTHFD2L,NAAA,NUP54,PARM1,PF4,PF4V1,PPBP,PPEF2,RASSF6,RCHY1,SCARB2,SDAD1,SEPT11,SHROOM3,SOWAHB,STBD1,THAP6,USO1"
TCGA.AA.A00F.01A	4	73943024	82369202	377	-0.2885	NEUTRAL	NA	60	"AFM,AFP,ALB,ANKRD17,ANTXR2,ANXA3,AREG,ART3,BMP2K,BMP3,BTC,C4orf22,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CNOT6L,CXCL1,CXCL10,CXCL11,CXCL13,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,EPGN,EREG,FAM47E,FAM47E-STBD1,FGF5,FRAS1,G3BP2,GK2,MRPL1,MTHFD2L,NAA11,NAAA,NUP54,PAQR3,PARM1,PF4,PF4V1,PPBP,PPEF2,PRDM8,PRKG2,RASGEF1B,RASSF6,RCHY1,SCARB2,SDAD1,SEPT11,SHROOM3,SOWAHB,STBD1,THAP6,USO1"
TCGA.AG.3909.01A	4	73956347	74702429	85	-0.0065	NEUTRAL	NA	7	"AFM,AFP,ALB,ANKRD17,CXCL6,CXCL8,RASSF6"
TCGA.AA.A010.01A	4	73968046	74014481	18	0.1213	NEUTRAL	NA	1	ANKRD17
TCGA.CK.5914.01A	4	73979489	74702429	82	0.1367	NEUTRAL	NA	7	"AFM,AFP,ALB,ANKRD17,CXCL6,CXCL8,RASSF6"
TCGA.AG.A01W.01A	4	74142679	74198327	17	-0.5036	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	4	74200350	74226276	10	0.37	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	4	74226797	74539749	41	-0.2326	NEUTRAL	NA	4	"AFM,AFP,ALB,RASSF6"
TCGA.AA.A010.01A	4	74315704	74477396	27	-0.1557	NEUTRAL	NA	3	"AFM,AFP,RASSF6"
TCGA.AG.A01W.01A	4	74576404	76671244	84	-0.1086	NEUTRAL	NA	21	"AREG,BTC,C4orf26,CDKL2,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,EPGN,EREG,G3BP2,MTHFD2L,PARM1,PF4,PF4V1,PPBP,RCHY1,THAP6,USO1"
TCGA.AA.A00N.01A	4	74713542	75310992	37	0.0402	NEUTRAL	NA	11	"AREG,CXCL1,CXCL2,CXCL3,CXCL5,EPGN,EREG,MTHFD2L,PF4,PF4V1,PPBP"
TCGA.CK.5914.01A	4	74864227	75230958	18	0.3699	NEUTRAL	NA	6	"CXCL2,CXCL3,CXCL5,EPGN,EREG,MTHFD2L"
TCGA.AA.3831	4	74963048	190921708	32813	-0.0175	NEUTRAL	NA	404	Too-Many
TCGA.AG.3909.01A	4	74964270	75230958	13	-0.075	NEUTRAL	NA	4	"CXCL2,EPGN,EREG,MTHFD2L"
TCGA.AG.4009.01A	4	75040229	77476715	195	0.0129	NEUTRAL	NA	26	"AREG,ART3,BTC,C4orf26,CCDC158,CDKL2,CXCL10,CXCL11,CXCL9,EPGN,EREG,FAM47E,FAM47E-STBD1,G3BP2,MTHFD2L,NAAA,NUP54,PARM1,PPEF2,RCHY1,SCARB2,SDAD1,SHROOM3,STBD1,THAP6,USO1"
TCGA.AA.A01F.01A	4	75040229	89618315	676	-0.3351	NEUTRAL	NA	90	"ABCG2,AFF1,AGPAT9,ANTXR2,ANXA3,AREG,ARHGAP24,ART3,BMP2K,BMP3,BTC,C4orf22,C4orf26,C4orf36,CCDC158,CCNG2,CCNI,CDKL2,CDS1,CNOT6L,COPS4,COQ2,CXCL10,CXCL11,CXCL13,CXCL9,DMP1,DSPP,ENOPH1,EPGN,EREG,FAM175A,FAM47E,FAM47E-STBD1,FGF5,FRAS1,G3BP2,GK2,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MRPL1,MRPS18C,MTHFD2L,NAA11,NAAA,NAP1L5,NKX6-1,NUDT9,NUP54,PAQR3,PARM1,PIGY,PKD2,PLAC8,PPEF2,PPM1K,PRDM8,PRKG2,PTPN13,PYURF,RASGEF1B,RCHY1,SCARB2,SCD5,SDAD1,SEC31A,SEPT11,SHROOM3,SLC10A6,SOWAHB,SPARCL1,SPP1,STBD1,THAP6,THAP9,TMEM150C,USO1,WDFY3"
TCGA.AF.6136	4	75090247	156406652	21846	-0.2665	NEUTRAL	NA	300	Too-Many
TCGA.AG.3909.01A	4	75485837	76587066	43	-0.4023	NEUTRAL	NA	8	"AREG,BTC,C4orf26,CDKL2,G3BP2,PARM1,RCHY1,THAP6"
TCGA.AG.A011.01A	4	75673204	113435773	1689	0.0412	NEUTRAL	NA	170	Too-Many
TCGA.CI.6621	4	75686604	190921708	32575	-0.3057	NEUTRAL	NA	399	Too-Many
TCGA.DY.A1DC	4	75746740	80781879	1726	0.0445	NEUTRAL	NA	34	"ANXA3,ART3,BMP2K,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CNOT6L,CXCL10,CXCL11,CXCL13,CXCL9,FAM47E,FAM47E-STBD1,FRAS1,G3BP2,GK2,MRPL1,NAA11,NAAA,NUP54,PAQR3,PARM1,PPEF2,RCHY1,SCARB2,SDAD1,SEPT11,SHROOM3,SOWAHB,STBD1,THAP6,USO1"
TCGA.AA.3850	4	76178903	78121477	660	0.08805	NEUTRAL	NA	24	"ART3,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,G3BP2,NAAA,NUP54,PPEF2,RCHY1,SCARB2,SDAD1,SEPT11,SHROOM3,SOWAHB,STBD1,THAP6,USO1"
TCGA.AF.3911	4	76237813	91619632	4673	-0.4063	NEUTRAL	NA	90	"ABCG2,AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,ART3,BMP2K,BMP3,C4orf22,C4orf26,C4orf36,CCDC158,CCNG2,CCNI,CCSER1,CDKL2,CDS1,CNOT6L,COPS4,COQ2,CXCL10,CXCL11,CXCL13,CXCL9,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,FAM47E,FAM47E-STBD1,FGF5,FRAS1,G3BP2,GK2,GPRIN3,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MMRN1,MRPL1,MRPS18C,NAA11,NAAA,NAP1L5,NKX6-1,NUDT9,NUP54,PAQR3,PIGY,PKD2,PLAC8,PPEF2,PPM1K,PRDM8,PRKG2,PTPN13,PYURF,RASGEF1B,RCHY1,SCARB2,SCD5,SDAD1,SEC31A,SEPT11,SHROOM3,SLC10A6,SNCA,SOWAHB,SPARCL1,SPP1,STBD1,THAP6,THAP9,TIGD2,TMEM150C,USO1,WDFY3"
TCGA.AA.A00N.01A	4	76440606	76587066	27	-0.1907	NEUTRAL	NA	4	"C4orf26,CDKL2,G3BP2,THAP6"
TCGA.AA.3941	4	76453148	78117391	564	0.2601	NEUTRAL	NA	23	"ART3,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,G3BP2,NAAA,NUP54,PPEF2,SCARB2,SDAD1,SEPT11,SHROOM3,SOWAHB,STBD1,THAP6,USO1"
TCGA.AA.3509.01A	4	76481229	76925908	88	-0.203	NEUTRAL	NA	8	"C4orf26,CDKL2,CXCL9,G3BP2,NAAA,PPEF2,SDAD1,USO1"
TCGA.CK.5914.01A	4	76570593	76587066	11	0.0034	NEUTRAL	NA	1	G3BP2
TCGA.AG.3909.01A	4	76649940	77979618	158	-0.1294	NEUTRAL	NA	18	"ART3,CCDC158,CCNI,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,NAAA,NUP54,PPEF2,SCARB2,SDAD1,SEPT11,SHROOM3,SOWAHB,STBD1,USO1"
TCGA.AA.A010.01A	4	76695780	76734302	17	0.0751	NEUTRAL	NA	1	USO1
TCGA.CK.5914.01A	4	76730059	77246958	103	-0.1443	NEUTRAL	NA	14	"ART3,CCDC158,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,NAAA,NUP54,PPEF2,SCARB2,SDAD1,STBD1,USO1"
TCGA.AG.A01W.01A	4	76748007	76914805	25	-0.2635	NEUTRAL	NA	3	"NAAA,PPEF2,SDAD1"
TCGA.AA.3861.01A	4	76785540	88531985	714	0.0231	NEUTRAL	NA	65	"AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,ART3,BMP2K,BMP3,C4orf22,C4orf36,CCDC158,CCNG2,CCNI,CDS1,CNOT6L,COPS4,COQ2,CXCL10,CXCL11,CXCL13,CXCL9,DSPP,ENOPH1,FAM175A,FAM47E,FAM47E-STBD1,FGF5,FRAS1,GK2,HELQ,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,KLHL8,LIN54,MAPK10,MRPL1,MRPS18C,NAA11,NAAA,NKX6-1,NUDT9,NUP54,PAQR3,PLAC8,PPEF2,PRDM8,PRKG2,PTPN13,RASGEF1B,SCARB2,SCD5,SDAD1,SEC31A,SEPT11,SHROOM3,SLC10A6,SOWAHB,SPARCL1,STBD1,THAP9,TMEM150C,WDFY3"
TCGA.AA.A00N.01A	4	76804077	76996976	48	-0.3377	NEUTRAL	NA	7	"ART3,CXCL10,CXCL11,CXCL9,NAAA,PPEF2,SDAD1"
TCGA.DC.4749	4	76817862	77738162	345	-0.4236	NEUTRAL	NA	14	"ART3,CCDC158,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,NAAA,NUP54,PPEF2,SCARB2,SDAD1,SHROOM3,STBD1"
TCGA.AA.A010.01A	4	76832498	77033499	49	0.1698	NEUTRAL	NA	6	"ART3,CXCL10,CXCL11,CXCL9,NAAA,SDAD1"
TCGA.AG.A01W.01A	4	76922827	76930789	4	0.3242	NEUTRAL	NA	1	CXCL9
TCGA.AA.3509.01A	4	76927261	77969372	100	0.2474	NEUTRAL	NA	14	"ART3,CCDC158,CCNI,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,NUP54,SCARB2,SEPT11,SHROOM3,SOWAHB,STBD1"
TCGA.AG.A01W.01A	4	76933832	76946621	7	-0.1228	NEUTRAL	NA	2	"ART3,CXCL10"
TCGA.AG.A01W.01A	4	76949104	77237738	60	-0.4946	NEUTRAL	NA	8	"ART3,CCDC158,CXCL11,FAM47E,FAM47E-STBD1,NUP54,SCARB2,STBD1"
TCGA.AG.3611.01A	4	77021362	77033499	5	-0.0714	NEUTRAL	NA	1	ART3
TCGA.AG.3611.01A	4	77036470	78652503	67	-0.4772	NEUTRAL	NA	13	"CCDC158,CCNG2,CCNI,CNOT6L,CXCL13,FAM47E,FAM47E-STBD1,NUP54,SCARB2,SEPT11,SHROOM3,SOWAHB,STBD1"
TCGA.AA.A010.01A	4	77100618	77955631	61	-0.0306	NEUTRAL	NA	8	"CCDC158,FAM47E,FAM47E-STBD1,SCARB2,SEPT11,SHROOM3,SOWAHB,STBD1"
TCGA.AF.6672	4	77202761	190921708	32091	0.0129	NEUTRAL	NA	382	Too-Many
TCGA.RU.A8FL	4	77220836	190921708	32131	-0.4746	NEUTRAL	NA	381	Too-Many
TCGA.AG.A01W.01A	4	77239071	88752226	659	-0.1873	NEUTRAL	NA	56	"AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,BMP2K,BMP3,C4orf22,C4orf36,CCDC158,CCNG2,CCNI,CDS1,CNOT6L,COPS4,COQ2,CXCL13,DMP1,DSPP,ENOPH1,FAM175A,FGF5,FRAS1,GK2,HELQ,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MRPL1,MRPS18C,NAA11,NKX6-1,NUDT9,PAQR3,PLAC8,PRDM8,PRKG2,PTPN13,RASGEF1B,SCD5,SEC31A,SEPT11,SHROOM3,SLC10A6,SOWAHB,SPARCL1,THAP9,TMEM150C,WDFY3"
TCGA.CK.5914.01A	4	77249987	77979618	50	0.3377	NEUTRAL	NA	5	"CCDC158,CCNI,SEPT11,SHROOM3,SOWAHB"
TCGA.AA.3496	4	77292800	190921708	32015	-0.0557	NEUTRAL	NA	379	Too-Many
TCGA.CK.6746	4	77292800	190921708	32027	-0.003	NEUTRAL	NA	379	Too-Many
TCGA.A6.3808.01A	4	77659897	78808312	54	-0.4477	NEUTRAL	NA	8	"CCNG2,CCNI,CNOT6L,CXCL13,MRPL1,SEPT11,SHROOM3,SOWAHB"
TCGA.AY.A71X	4	77727504	181707385	28624	0.0443	NEUTRAL	NA	339	Too-Many
TCGA.DC.4749	4	77754618	87156741	2979	0.0441	NEUTRAL	NA	41	"AGPAT9,ANTXR2,ANXA3,ARHGAP24,BMP2K,BMP3,C4orf22,CCNG2,CCNI,CDS1,CNOT6L,COPS4,COQ2,CXCL13,ENOPH1,FAM175A,FGF5,FRAS1,GK2,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MAPK10,MRPL1,MRPS18C,NAA11,NKX6-1,PAQR3,PLAC8,PRDM8,PRKG2,RASGEF1B,SCD5,SEC31A,SEPT11,SOWAHB,THAP9,TMEM150C,WDFY3"
TCGA.DM.A28A	4	77795949	77883497	32	-0.2865	NEUTRAL	NA	2	"SEPT11,SOWAHB"
TCGA.F5.6864	4	77836679	164113309	23144	-0.0047	NEUTRAL	NA	292	Too-Many
TCGA.DM.A28A	4	77890792	95492346	4949	0.0718	NEUTRAL	NA	74	"ABCG2,AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,ATOH1,BMP2K,BMP3,C4orf22,C4orf36,CCNG2,CCNI,CCSER1,CDS1,CNOT6L,COPS4,COQ2,CXCL13,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,FGF5,FRAS1,GK2,GPRIN3,GRID2,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPGDS,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MMRN1,MRPL1,MRPS18C,NAA11,NAP1L5,NKX6-1,NUDT9,PAQR3,PDLIM5,PIGY,PKD2,PLAC8,PPM1K,PRDM8,PRKG2,PTPN13,PYURF,RASGEF1B,SCD5,SEC31A,SEPT11,SLC10A6,SMARCAD1,SNCA,SPARCL1,SPP1,THAP9,TIGD2,TMEM150C,WDFY3"
TCGA.AG.4009.01A	4	77917536	77977373	13	-0.0523	NEUTRAL	NA	2	"CCNI,SEPT11"
TCGA.AA.A02K.01A	4	77941617	77955632	4	-0.4995	NEUTRAL	NA	1	11-Sep
TCGA.AA.A02K.01A	4	77969321	90874132	746	0.0438	NEUTRAL	NA	67	"ABCG2,AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,BMP2K,BMP3,C4orf22,C4orf36,CCNG2,CCNI,CDS1,CNOT6L,COPS4,COQ2,CXCL13,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,FGF5,FRAS1,GK2,GPRIN3,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MMRN1,MRPL1,MRPS18C,NAA11,NAP1L5,NKX6-1,NUDT9,PAQR3,PIGY,PKD2,PLAC8,PPM1K,PRDM8,PRKG2,PTPN13,PYURF,RASGEF1B,SCD5,SEC31A,SLC10A6,SNCA,SPARCL1,SPP1,THAP9,TIGD2,TMEM150C,WDFY3"
TCGA.AG.A00H.01A	4	77979618	186320727	3607	-0.275	NEUTRAL	NA	360	Too-Many
TCGA.AA.A010.01A	4	78079654	85569663	370	0.049	NEUTRAL	NA	35	"AGPAT9,ANTXR2,ANXA3,BMP2K,BMP3,C4orf22,CCNG2,CDS1,CNOT6L,COPS4,COQ2,CXCL13,ENOPH1,FAM175A,FGF5,FRAS1,GK2,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MRPL1,MRPS18C,NAA11,NKX6-1,PAQR3,PLAC8,PRDM8,PRKG2,RASGEF1B,SCD5,SEC31A,THAP9,TMEM150C"
TCGA.AA.3509.01A	4	78085423	78783932	19	0.2865	NEUTRAL	NA	4	"CCNG2,CNOT6L,CXCL13,MRPL1"
TCGA.AG.4009.01A	4	78086917	83802959	251	-0.1242	NEUTRAL	NA	23	"ANTXR2,ANXA3,BMP2K,BMP3,C4orf22,CCNG2,CNOT6L,CXCL13,ENOPH1,FGF5,FRAS1,GK2,HNRNPD,HNRNPDL,MRPL1,NAA11,PAQR3,PRDM8,PRKG2,RASGEF1B,SCD5,SEC31A,TMEM150C"
TCGA.AA.3941	4	78119233	79673507	649	-0.0137	NEUTRAL	NA	5	"ANXA3,CNOT6L,CXCL13,FRAS1,MRPL1"
TCGA.AA.3850	4	78123573	79673507	647	-0.19505	NEUTRAL	NA	5	"ANXA3,CNOT6L,CXCL13,FRAS1,MRPL1"
TCGA.G4.6322	4	78250119	165661476	23489	0.0371	NEUTRAL	NA	295	Too-Many
TCGA.AA.3846	4	78511202	190921708	31534	-0.4235	NEUTRAL	NA	373	Too-Many
TCGA.AG.3909.01A	4	78526961	79205512	38	-0.1269	NEUTRAL	NA	4	"CNOT6L,CXCL13,FRAS1,MRPL1"
TCGA.CK.5914.01A	4	78526961	79351409	62	0.3661	NEUTRAL	NA	4	"CNOT6L,CXCL13,FRAS1,MRPL1"
TCGA.AG.A00C.01A	4	78526961	79443786	94	-0.3235	NEUTRAL	NA	4	"CNOT6L,CXCL13,FRAS1,MRPL1"
TCGA.AG.3611.01A	4	78792851	79393284	15	-0.136	NEUTRAL	NA	2	"FRAS1,MRPL1"
TCGA.AA.A00L.01A	4	78808312	79461637	31	-0.0558	NEUTRAL	NA	2	"FRAS1,MRPL1"
TCGA.AA.3509.01A	4	78815276	79747149	92	0.2422	NEUTRAL	NA	4	"ANXA3,BMP2K,FRAS1,MRPL1"
TCGA.AA.A00Q.01A	4	79188343	79461637	16	0.3344	NEUTRAL	NA	1	FRAS1
TCGA.AA.A00D.01A	4	79188343	79475599	22	0.0127	NEUTRAL	NA	2	"ANXA3,FRAS1"
TCGA.AG.3909.01A	4	79207511	79351409	24	0.3125	NEUTRAL	NA	1	FRAS1
TCGA.AG.3909.01A	4	79353480	79371264	8	-0.1813	NEUTRAL	NA	1	FRAS1
TCGA.CK.5914.01A	4	79369165	79385124	5	0.0768	NEUTRAL	NA	1	FRAS1
TCGA.AG.3611.01A	4	79400546	99579236	647	-0.4155	NEUTRAL	NA	74	"ABCG2,AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,ATOH1,BMP2K,BMP3,BMPR1B,C4orf22,C4orf36,CCSER1,CDS1,COPS4,COQ2,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,FGF5,FRAS1,GK2,GPRIN3,GRID2,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPGDS,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MMRN1,MRPS18C,NAA11,NAP1L5,NKX6-1,NUDT9,PAQR3,PDHA2,PDLIM5,PIGY,PKD2,PLAC8,PPM1K,PRDM8,PRKG2,PTPN13,PYURF,RAP1GDS1,RASGEF1B,SCD5,SEC31A,SLC10A6,SMARCAD1,SNCA,SPARCL1,SPP1,STPG2,THAP9,TIGD2,TMEM150C,TSPAN5,UNC5C,WDFY3"
TCGA.CK.5914.01A	4	79442626	80977030	56	0.2089	NEUTRAL	NA	7	"ANTXR2,ANXA3,BMP2K,FRAS1,GK2,NAA11,PAQR3"
TCGA.AG.A00C.01A	4	79447645	79494289	7	0.2841	NEUTRAL	NA	2	"ANXA3,FRAS1"
TCGA.AG.3909.01A	4	79455555	80977030	53	-0.2321	NEUTRAL	NA	7	"ANTXR2,ANXA3,BMP2K,FRAS1,GK2,NAA11,PAQR3"
TCGA.AG.A00C.01A	4	79500142	80828506	35	-0.1579	NEUTRAL	NA	6	"ANTXR2,ANXA3,BMP2K,GK2,NAA11,PAQR3"
TCGA.AA.A00N.01A	4	79841655	80954579	18	-0.0521	NEUTRAL	NA	4	"ANTXR2,GK2,NAA11,PAQR3"
TCGA.G4.6628	4	80706061	190921708	30849	0.0039	NEUTRAL	NA	364	Too-Many
TCGA.BM.6198	4	80751648	190921708	30926	-0.40575	NEUTRAL	NA	364	Too-Many
TCGA.DY.A1DC	4	80850320	85174065	1311	0.0356	NEUTRAL	NA	23	"AGPAT9,ANTXR2,BMP3,C4orf22,COPS4,COQ2,ENOPH1,FAM175A,FGF5,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MRPS18C,PLAC8,PRDM8,PRKG2,RASGEF1B,SCD5,SEC31A,THAP9,TMEM150C"
TCGA.AG.A00C.01A	4	80898705	81122425	17	0.1482	NEUTRAL	NA	2	"ANTXR2,PRDM8"
TCGA.D5.6932	4	80930569	90952423	2909	0.0387	NEUTRAL	NA	56	"ABCG2,AFF1,AGPAT9,ANTXR2,ARHGAP24,BMP3,C4orf22,C4orf36,CDS1,COPS4,COQ2,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,FGF5,GPRIN3,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MMRN1,MRPS18C,NAP1L5,NKX6-1,NUDT9,PIGY,PKD2,PLAC8,PPM1K,PRDM8,PRKG2,PTPN13,PYURF,RASGEF1B,SCD5,SEC31A,SLC10A6,SNCA,SPARCL1,SPP1,THAP9,TIGD2,TMEM150C,WDFY3"
TCGA.AA.A00N.01A	4	81123026	82369202	40	0.3546	NEUTRAL	NA	6	"BMP3,C4orf22,FGF5,PRDM8,PRKG2,RASGEF1B"
TCGA.AG.A00C.01A	4	81123026	82369202	40	-0.1957	NEUTRAL	NA	6	"BMP3,C4orf22,FGF5,PRDM8,PRKG2,RASGEF1B"
TCGA.AG.3909.01A	4	81256872	82369202	36	-0.1321	NEUTRAL	NA	4	"BMP3,C4orf22,PRKG2,RASGEF1B"
TCGA.CK.5914.01A	4	81283856	82061637	16	0.274	NEUTRAL	NA	3	"BMP3,C4orf22,PRKG2"
TCGA.CK.5914.01A	4	82063907	83294568	29	-0.3758	NEUTRAL	NA	3	"HNRNPD,PRKG2,RASGEF1B"
TCGA.AA.3941	4	82116676	83085122	381	-0.0793	NEUTRAL	NA	2	"PRKG2,RASGEF1B"
TCGA.AA.3850	4	82142550	83145931	390	-0.17815	NEUTRAL	NA	1	RASGEF1B
TCGA.A6.2675	4	82322917	85402556	1047	0.1854	NEUTRAL	NA	17	"AGPAT9,COPS4,COQ2,ENOPH1,FAM175A,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MRPS18C,PLAC8,RASGEF1B,SCD5,SEC31A,THAP9,TMEM150C"
TCGA.AA.3509.01A	4	82348893	89912083	524	0.0162	NEUTRAL	NA	46	"ABCG2,AFF1,AGPAT9,ARHGAP24,C4orf36,CDS1,COPS4,COQ2,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MRPS18C,NAP1L5,NKX6-1,NUDT9,PIGY,PKD2,PLAC8,PPM1K,PTPN13,PYURF,RASGEF1B,SCD5,SEC31A,SLC10A6,SPARCL1,SPP1,THAP9,TMEM150C,WDFY3"
TCGA.AG.A00C.01A	4	82377758	83347151	10	0.1791	NEUTRAL	NA	3	"HNRNPD,HNRNPDL,RASGEF1B"
TCGA.AA.A00F.01A	4	82377758	83369026	17	0.0992	NEUTRAL	NA	4	"ENOPH1,HNRNPD,HNRNPDL,RASGEF1B"
TCGA.AG.3902	4	83058829	91253955	2344	0.3088	NEUTRAL	NA	50	"ABCG2,AFF1,AGPAT9,ARHGAP24,C4orf36,CCSER1,CDS1,COPS4,COQ2,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,GPRIN3,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MMRN1,MRPS18C,NAP1L5,NKX6-1,NUDT9,PIGY,PKD2,PLAC8,PPM1K,PTPN13,PYURF,SCD5,SEC31A,SLC10A6,SNCA,SPARCL1,SPP1,THAP9,TIGD2,TMEM150C,WDFY3"
TCGA.AA.3941	4	83087693	84605154	437	0.3658	NEUTRAL	NA	16	"AGPAT9,COPS4,COQ2,ENOPH1,FAM175A,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MRPS18C,PLAC8,SCD5,SEC31A,THAP9,TMEM150C"
TCGA.AA.3850	4	83152846	84597666	415	0.30235	NEUTRAL	NA	16	"AGPAT9,COPS4,COQ2,ENOPH1,FAM175A,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MRPS18C,PLAC8,SCD5,SEC31A,THAP9,TMEM150C"
TCGA.A6.3810.01A	4	83294568	83348295	4	-0.3954	NEUTRAL	NA	2	"HNRNPD,HNRNPDL"
TCGA.A6.3808.01A	4	83347151	88531985	357	-0.1623	NEUTRAL	NA	30	"AFF1,AGPAT9,ARHGAP24,C4orf36,CDS1,COPS4,COQ2,DSPP,ENOPH1,FAM175A,HELQ,HNRNPDL,HPSE,HSD17B11,HSD17B13,KLHL8,LIN54,MAPK10,MRPS18C,NKX6-1,NUDT9,PLAC8,PTPN13,SCD5,SEC31A,SLC10A6,SPARCL1,THAP9,TMEM150C,WDFY3"
TCGA.A6.3810.01A	4	83349132	88116474	323	0.1333	NEUTRAL	NA	25	"AFF1,AGPAT9,ARHGAP24,C4orf36,CDS1,COPS4,COQ2,ENOPH1,FAM175A,HELQ,HNRNPDL,HPSE,KLHL8,LIN54,MAPK10,MRPS18C,NKX6-1,PLAC8,PTPN13,SCD5,SEC31A,SLC10A6,THAP9,TMEM150C,WDFY3"
TCGA.AA.A00N.01A	4	83350403	83381087	7	-0.2388	NEUTRAL	NA	2	"ENOPH1,HNRNPDL"
TCGA.AG.A00C.01A	4	83350403	83783610	34	-0.1471	NEUTRAL	NA	5	"ENOPH1,HNRNPDL,SCD5,SEC31A,TMEM150C"
TCGA.CK.5914.01A	4	83350403	84465624	130	-0.1337	NEUTRAL	NA	15	"AGPAT9,COPS4,COQ2,ENOPH1,FAM175A,HELQ,HNRNPDL,HPSE,LIN54,MRPS18C,PLAC8,SCD5,SEC31A,THAP9,TMEM150C"
TCGA.AG.3909.01A	4	83350403	86921583	226	-0.1287	NEUTRAL	NA	19	"AGPAT9,ARHGAP24,CDS1,COPS4,COQ2,ENOPH1,FAM175A,HELQ,HNRNPDL,HPSE,LIN54,MRPS18C,NKX6-1,PLAC8,SCD5,SEC31A,THAP9,TMEM150C,WDFY3"
TCGA.AA.A00F.01A	4	83372175	84015818	67	-0.302	NEUTRAL	NA	8	"COPS4,ENOPH1,LIN54,PLAC8,SCD5,SEC31A,THAP9,TMEM150C"
TCGA.AA.A00N.01A	4	83783610	83795722	8	-0.2927	NEUTRAL	NA	1	SEC31A
TCGA.AG.A00C.01A	4	83784428	83838357	17	0.2089	NEUTRAL	NA	2	"SEC31A,THAP9"
TCGA.F4.6808	4	83800334	88762565	1391	0.0649	NEUTRAL	NA	29	"AFF1,AGPAT9,ARHGAP24,C4orf36,CDS1,COPS4,COQ2,DMP1,DSPP,FAM175A,HELQ,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MRPS18C,NKX6-1,NUDT9,PLAC8,PTPN13,SEC31A,SLC10A6,SPARCL1,THAP9,WDFY3"
TCGA.AA.A00N.01A	4	83838110	83996412	25	0.3437	NEUTRAL	NA	3	"COPS4,LIN54,THAP9"
TCGA.AG.4009.01A	4	83838110	84382070	69	-0.0542	NEUTRAL	NA	8	"COPS4,COQ2,HELQ,HPSE,LIN54,MRPS18C,PLAC8,THAP9"
TCGA.AG.A00C.01A	4	83839060	83996412	23	-0.1199	NEUTRAL	NA	3	"COPS4,LIN54,THAP9"
TCGA.AG.A00C.01A	4	84015818	84240445	19	0.2579	NEUTRAL	NA	3	"COQ2,HPSE,PLAC8"
TCGA.AA.A00F.01A	4	84025997	84243321	13	0.0622	NEUTRAL	NA	3	"COQ2,HPSE,PLAC8"
TCGA.AA.A01K.01A	4	84185320	85609188	82	0.148	NEUTRAL	NA	9	"AGPAT9,CDS1,COQ2,FAM175A,HELQ,HPSE,MRPS18C,NKX6-1,WDFY3"
TCGA.AG.A00C.01A	4	84243321	84388560	28	-0.0977	NEUTRAL	NA	4	"FAM175A,HELQ,HPSE,MRPS18C"
TCGA.AA.A00F.01A	4	84255671	87769915	151	-0.3527	NEUTRAL	NA	12	"AGPAT9,ARHGAP24,CDS1,FAM175A,HELQ,HPSE,MAPK10,MRPS18C,NKX6-1,PTPN13,SLC10A6,WDFY3"
TCGA.AA.A01S	4	84351152	110365514	6785	0.00745	NEUTRAL	NA	100	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AFF1,AGPAT9,AIMP1,ARHGAP24,ARHGEF38,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,C4orf36,CCSER1,CDS1,CENPE,CISD2,COL25A1,CXXC4,CYP2U1,DAPP1,DDIT4L,DKK2,DMP1,DNAJB14,DSPP,EIF4E,EMCN,ETNPPL,FAM13A,FAM175A,GIMD1,GPRIN3,GRID2,GSTCD,H2AFZ,HADH,HELQ,HERC3,HERC5,HERC6,HPGDS,HSD17B11,HSD17B13,IBSP,INTS12,KLHL8,LAMTOR3,LEF1,MANBA,MAPK10,MEPE,METAP1,MMRN1,MRPS18C,MTTP,NAP1L5,NFKB1,NKX6-1,NPNT,NUDT9,OSTC,PAPSS1,PDHA2,PDLIM5,PIGY,PKD2,PPA2,PPM1K,PPP3CA,PTPN13,PYURF,RAP1GDS1,RPL34,SEC24B,SGMS2,SLC10A6,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,SPARCL1,SPP1,STPG2,TACR3,TBCK,TET2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C,WDFY3"
TCGA.AA.A00N.01A	4	84380824	85609188	46	-0.2657	NEUTRAL	NA	6	"AGPAT9,CDS1,FAM175A,MRPS18C,NKX6-1,WDFY3"
TCGA.AG.4009.01A	4	84383610	84403266	8	-0.4407	NEUTRAL	NA	1	FAM175A
TCGA.AG.4009.01A	4	84457738	84525799	12	0.0177	NEUTRAL	NA	1	AGPAT9
TCGA.CK.5914.01A	4	84502727	85566338	25	0.3711	NEUTRAL	NA	3	"AGPAT9,CDS1,NKX6-1"
TCGA.AG.A00C.01A	4	84502727	87769915	159	-0.2305	NEUTRAL	NA	8	"AGPAT9,ARHGAP24,CDS1,MAPK10,NKX6-1,PTPN13,SLC10A6,WDFY3"
TCGA.AA.3941	4	84618259	84721457	30	-0.0767	NEUTRAL	NA	0	None
TCGA.AZ.4614	4	84831133	92184079	2040	0.3161	NEUTRAL	NA	34	"ABCG2,AFF1,ARHGAP24,C4orf36,CCSER1,CDS1,DMP1,DSPP,FAM13A,GPRIN3,HERC3,HERC5,HERC6,HSD17B11,HSD17B13,IBSP,KLHL8,MAPK10,MEPE,MMRN1,NAP1L5,NKX6-1,NUDT9,PIGY,PKD2,PPM1K,PTPN13,PYURF,SLC10A6,SNCA,SPARCL1,SPP1,TIGD2,WDFY3"
TCGA.AA.3941	4	84966197	86191082	305	-0.4596	NEUTRAL	NA	3	"CDS1,NKX6-1,WDFY3"
TCGA.DM.A1D8	4	84980296	85213848	97	-0.3915	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	85193271	88699736	904	0.0469	NEUTRAL	NA	16	"AFF1,ARHGAP24,C4orf36,CDS1,DMP1,DSPP,HSD17B11,HSD17B13,KLHL8,MAPK10,NKX6-1,NUDT9,PTPN13,SLC10A6,SPARCL1,WDFY3"
TCGA.DM.A1D8	4	85232816	91740549	1770	0.0466	NEUTRAL	NA	34	"ABCG2,AFF1,ARHGAP24,C4orf36,CCSER1,CDS1,DMP1,DSPP,FAM13A,GPRIN3,HERC3,HERC5,HERC6,HSD17B11,HSD17B13,IBSP,KLHL8,MAPK10,MEPE,MMRN1,NAP1L5,NKX6-1,NUDT9,PIGY,PKD2,PPM1K,PTPN13,PYURF,SLC10A6,SNCA,SPARCL1,SPP1,TIGD2,WDFY3"
TCGA.A6.2675	4	85416442	115781900	7940	-0.2718	NEUTRAL	NA	119	Too-Many
TCGA.AG.4009.01A	4	85418685	100803090	617	-0.0713	NEUTRAL	NA	59	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AFF1,ARHGAP24,ATOH1,BMPR1B,C4orf17,C4orf36,CCSER1,CDS1,DAPP1,DMP1,DSPP,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HERC5,HERC6,HPGDS,HSD17B11,HSD17B13,IBSP,KLHL8,LAMTOR3,MAPK10,MEPE,METAP1,MMRN1,MTTP,NAP1L5,NKX6-1,NUDT9,PDHA2,PDLIM5,PIGY,PKD2,PPM1K,PTPN13,PYURF,RAP1GDS1,SLC10A6,SMARCAD1,SNCA,SPARCL1,SPP1,STPG2,TIGD2,TRMT10A,TSPAN5,UNC5C,WDFY3"
TCGA.CM.5868	4	85566808	172367539	23122	-0.3813	NEUTRAL	NA	283	Too-Many
TCGA.CK.5914.01A	4	85569663	85611611	9	-0.3802	NEUTRAL	NA	2	"CDS1,WDFY3"
TCGA.AA.A00N.01A	4	85611611	85647968	17	0.3403	NEUTRAL	NA	1	WDFY3
TCGA.AA.A01K.01A	4	85614001	88577585	194	0.2476	NEUTRAL	NA	14	"AFF1,ARHGAP24,C4orf36,DMP1,DSPP,HSD17B11,HSD17B13,KLHL8,MAPK10,NUDT9,PTPN13,SLC10A6,SPARCL1,WDFY3"
TCGA.CK.5914.01A	4	85634256	85699609	24	-0.2475	NEUTRAL	NA	1	WDFY3
TCGA.CI.6624	4	85634579	190921708	29378	-0.1201	NEUTRAL	NA	339	Too-Many
TCGA.AZ.4684.01A	4	85647968	87706978	96	-0.0795	NEUTRAL	NA	4	"ARHGAP24,MAPK10,PTPN13,WDFY3"
TCGA.AA.A010.01A	4	85672589	85710831	14	0.1901	NEUTRAL	NA	1	WDFY3
TCGA.CK.5914.01A	4	85701209	87769915	94	0.2196	NEUTRAL	NA	5	"ARHGAP24,MAPK10,PTPN13,SLC10A6,WDFY3"
TCGA.AA.A010.01A	4	85729432	87693910	63	-0.1272	NEUTRAL	NA	4	"ARHGAP24,MAPK10,PTPN13,WDFY3"
TCGA.CM.5349	4	85827191	182558004	26459	0.0403	NEUTRAL	NA	301	Too-Many
TCGA.AA.3941	4	86201049	87629936	415	-0.4861	NEUTRAL	NA	3	"ARHGAP24,MAPK10,PTPN13"
TCGA.AA.A01Z	4	86510434	138178011	13289	-0.007	NEUTRAL	NA	162	Too-Many
TCGA.EI.6508	4	86575736	91290713	1318	0.0602	NEUTRAL	NA	31	"ABCG2,AFF1,ARHGAP24,C4orf36,CCSER1,DMP1,DSPP,FAM13A,GPRIN3,HERC3,HERC5,HERC6,HSD17B11,HSD17B13,IBSP,KLHL8,MAPK10,MEPE,MMRN1,NAP1L5,NUDT9,PIGY,PKD2,PPM1K,PTPN13,PYURF,SLC10A6,SNCA,SPARCL1,SPP1,TIGD2"
TCGA.AG.3909.01A	4	87019633	87769915	56	0.0811	NEUTRAL	NA	3	"MAPK10,PTPN13,SLC10A6"
TCGA.AA.A00L.01A	4	87115443	87728665	9	0.049	NEUTRAL	NA	2	"MAPK10,PTPN13"
TCGA.DC.4749	4	87166904	121514462	8970	-0.4244	NEUTRAL	NA	127	Too-Many
TCGA.AA.3975	4	87182435	162101963	19676	0.0018	NEUTRAL	NA	251	Too-Many
TCGA.AA.3850	4	87641218	88509668	221	0.19225	NEUTRAL	NA	9	"AFF1,C4orf36,HSD17B11,HSD17B13,KLHL8,NUDT9,PTPN13,SLC10A6,SPARCL1"
TCGA.AA.3941	4	87641218	88509668	220	0.3009	NEUTRAL	NA	9	"AFF1,C4orf36,HSD17B11,HSD17B13,KLHL8,NUDT9,PTPN13,SLC10A6,SPARCL1"
TCGA.AZ.4684.01A	4	87717958	89941589	227	-0.4296	NEUTRAL	NA	24	"ABCG2,AFF1,C4orf36,DMP1,DSPP,FAM13A,HERC3,HERC5,HERC6,HSD17B11,HSD17B13,IBSP,KLHL8,MEPE,NAP1L5,NUDT9,PIGY,PKD2,PPM1K,PTPN13,PYURF,SLC10A6,SPARCL1,SPP1"
TCGA.AA.A00L.01A	4	87744790	89575142	156	-0.4044	NEUTRAL	NA	21	"ABCG2,AFF1,C4orf36,DMP1,DSPP,HERC3,HERC5,HERC6,HSD17B11,HSD17B13,IBSP,KLHL8,MEPE,NUDT9,PIGY,PKD2,PPM1K,PYURF,SLC10A6,SPARCL1,SPP1"
TCGA.CK.5914.01A	4	87928481	88116474	28	0.2115	NEUTRAL	NA	2	"AFF1,KLHL8"
TCGA.AG.A00C.01A	4	87928481	89352277	133	-0.1812	NEUTRAL	NA	15	"ABCG2,AFF1,DMP1,DSPP,HERC6,HSD17B11,HSD17B13,IBSP,KLHL8,MEPE,NUDT9,PKD2,PPM1K,SPARCL1,SPP1"
TCGA.AA.A00F.01A	4	87928481	100239162	347	-0.3639	NEUTRAL	NA	44	"ABCG2,ADH1A,ADH1B,ADH4,ADH5,ADH6,AFF1,ATOH1,BMPR1B,CCSER1,DMP1,DSPP,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HERC5,HERC6,HPGDS,HSD17B11,HSD17B13,IBSP,KLHL8,MEPE,METAP1,MMRN1,NAP1L5,NUDT9,PDHA2,PDLIM5,PIGY,PKD2,PPM1K,PYURF,RAP1GDS1,SMARCAD1,SNCA,SPARCL1,SPP1,STPG2,TIGD2,TSPAN5,UNC5C"
TCGA.AG.3909.01A	4	87967268	88278382	37	0.0631	NEUTRAL	NA	4	"AFF1,HSD17B11,HSD17B13,KLHL8"
TCGA.A6.3810.01A	4	88226319	109588315	807	-0.1704	NEUTRAL	NA	83	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ARHGEF38,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,CXXC4,CYP2U1,DAPP1,DDIT4L,DKK2,DMP1,DNAJB14,DSPP,EIF4E,EMCN,FAM13A,GIMD1,GPRIN3,GRID2,GSTCD,H2AFZ,HADH,HERC3,HERC5,HERC6,HPGDS,HSD17B11,HSD17B13,IBSP,INTS12,LAMTOR3,LEF1,MANBA,MEPE,METAP1,MMRN1,MTTP,NAP1L5,NFKB1,NPNT,NUDT9,OSTC,PAPSS1,PDHA2,PDLIM5,PIGY,PKD2,PPA2,PPM1K,PPP3CA,PYURF,RAP1GDS1,RPL34,SGMS2,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,SPARCL1,SPP1,STPG2,TACR3,TBCK,TET2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.CK.5914.01A	4	88344027	88372701	6	0.0315	NEUTRAL	NA	1	NUDT9
TCGA.AG.3909.01A	4	88344027	88759709	32	0.1111	NEUTRAL	NA	6	"DMP1,DSPP,IBSP,MEPE,NUDT9,SPARCL1"
TCGA.CK.5914.01A	4	88375514	88403579	6	-0.5136	NEUTRAL	NA	2	"NUDT9,SPARCL1"
TCGA.CK.5914.01A	4	88411383	88537574	13	0.3231	NEUTRAL	NA	2	"DSPP,SPARCL1"
TCGA.AA.3941	4	88510557	88709782	59	-0.0623	NEUTRAL	NA	2	"DMP1,DSPP"
TCGA.AA.3850	4	88546860	88709782	53	-0.11835	NEUTRAL	NA	1	DMP1
TCGA.A6.3808.01A	4	88577585	89410280	89	-0.3923	NEUTRAL	NA	9	"ABCG2,DMP1,HERC5,HERC6,IBSP,MEPE,PKD2,PPM1K,SPP1"
TCGA.AA.3861.01A	4	88577585	103806326	537	0.1086	NEUTRAL	NA	56	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BANK1,BMPR1B,C4orf17,CCSER1,CISD2,DAPP1,DDIT4L,DMP1,DNAJB14,EIF4E,EMCN,FAM13A,GPRIN3,GRID2,H2AFZ,HERC3,HERC5,HERC6,HPGDS,IBSP,LAMTOR3,MANBA,MEPE,METAP1,MMRN1,MTTP,NAP1L5,NFKB1,PDHA2,PDLIM5,PIGY,PKD2,PPM1K,PPP3CA,PYURF,RAP1GDS1,SLC39A8,SLC9B1,SMARCAD1,SNCA,SPP1,STPG2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AA.3867	4	88714804	88723179	9	-0.4887	NEUTRAL	NA	1	IBSP
TCGA.AA.3941	4	88721781	88770558	27	-0.5051	NEUTRAL	NA	2	"IBSP,MEPE"
TCGA.AA.3850	4	88721781	88771059	29	-0.50405	NEUTRAL	NA	2	"IBSP,MEPE"
TCGA.AA.3867	4	88723209	91789352	878	0.1358	NEUTRAL	NA	18	"ABCG2,CCSER1,FAM13A,GPRIN3,HERC3,HERC5,HERC6,IBSP,MEPE,MMRN1,NAP1L5,PIGY,PKD2,PPM1K,PYURF,SNCA,SPP1,TIGD2"
TCGA.CK.5914.01A	4	88723442	88766082	8	0.1737	NEUTRAL	NA	2	"IBSP,MEPE"
TCGA.AA.A01K.01A	4	88723442	94693280	182	0.3158	NEUTRAL	NA	19	"ABCG2,CCSER1,FAM13A,GPRIN3,GRID2,HERC3,HERC5,HERC6,IBSP,MEPE,MMRN1,NAP1L5,PIGY,PKD2,PPM1K,PYURF,SNCA,SPP1,TIGD2"
TCGA.DY.A1DC	4	88724194	90831804	645	0.0765	NEUTRAL	NA	17	"ABCG2,FAM13A,GPRIN3,HERC3,HERC5,HERC6,IBSP,MEPE,MMRN1,NAP1L5,PIGY,PKD2,PPM1K,PYURF,SNCA,SPP1,TIGD2"
TCGA.AG.A014.01A	4	88732467	89526928	89	0.07	NEUTRAL	NA	11	"ABCG2,HERC3,HERC5,HERC6,IBSP,MEPE,PIGY,PKD2,PPM1K,PYURF,SPP1"
TCGA.AA.3862.01A	4	88732467	103806326	531	-0.2201	NEUTRAL	NA	55	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BANK1,BMPR1B,C4orf17,CCSER1,CISD2,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,FAM13A,GPRIN3,GRID2,H2AFZ,HERC3,HERC5,HERC6,HPGDS,IBSP,LAMTOR3,MANBA,MEPE,METAP1,MMRN1,MTTP,NAP1L5,NFKB1,PDHA2,PDLIM5,PIGY,PKD2,PPM1K,PPP3CA,PYURF,RAP1GDS1,SLC39A8,SLC9B1,SMARCAD1,SNCA,SPP1,STPG2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AG.3909.01A	4	88766082	88940578	8	-0.4931	NEUTRAL	NA	3	"MEPE,PKD2,SPP1"
TCGA.AA.3850	4	88773094	89527322	203	0.32035	NEUTRAL	NA	9	"ABCG2,HERC3,HERC5,HERC6,PIGY,PKD2,PPM1K,PYURF,SPP1"
TCGA.AG.A01W.01A	4	88796598	103854618	528	-0.186	NEUTRAL	NA	53	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BANK1,BMPR1B,C4orf17,CCSER1,CISD2,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,FAM13A,GPRIN3,GRID2,H2AFZ,HERC3,HERC5,HERC6,HPGDS,LAMTOR3,MANBA,METAP1,MMRN1,MTTP,NAP1L5,NFKB1,PDHA2,PDLIM5,PIGY,PKD2,PPM1K,PPP3CA,PYURF,RAP1GDS1,SLC39A8,SLC9B1,SMARCAD1,SNCA,SPP1,STPG2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AG.3909.01A	4	88957320	89060897	28	0.1398	NEUTRAL	NA	2	"ABCG2,PKD2"
TCGA.AA.A010.01A	4	88973106	100787138	389	0.1223	NEUTRAL	NA	39	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BMPR1B,C4orf17,CCSER1,DAPP1,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HERC5,HERC6,HPGDS,METAP1,MMRN1,MTTP,NAP1L5,PDHA2,PDLIM5,PIGY,PKD2,PPM1K,PYURF,RAP1GDS1,SMARCAD1,SNCA,STPG2,TIGD2,TRMT10A,TSPAN5,UNC5C"
TCGA.CK.5914.01A	4	89015679	89020434	4	-0.1266	NEUTRAL	NA	1	ABCG2
TCGA.CK.5914.01A	4	89183700	89306590	9	-0.3329	NEUTRAL	NA	2	"HERC6,PPM1K"
TCGA.AA.A00D.01A	4	89189846	89575142	34	-0.2085	NEUTRAL	NA	6	"HERC3,HERC5,HERC6,PIGY,PPM1K,PYURF"
TCGA.AG.3909.01A	4	89311767	89317951	4	-0.0874	NEUTRAL	NA	1	HERC6
TCGA.AA.A00N.01A	4	89311767	89352277	14	0.2248	NEUTRAL	NA	1	HERC6
TCGA.AA.3680	4	89311961	190921708	28453	-0.0167	NEUTRAL	NA	319	Too-Many
TCGA.AG.3909.01A	4	89319240	89356867	11	0.2029	NEUTRAL	NA	1	HERC6
TCGA.AG.A00C.01A	4	89356867	89526928	28	0.2248	NEUTRAL	NA	5	"HERC3,HERC5,HERC6,PIGY,PYURF"
TCGA.AG.3909.01A	4	89358024	89363339	4	-0.2348	NEUTRAL	NA	1	HERC6
TCGA.CK.5914.01A	4	89396955	89442697	12	-0.293	NEUTRAL	NA	3	"HERC5,PIGY,PYURF"
TCGA.AA.A00N.01A	4	89396955	89526928	14	-0.3773	NEUTRAL	NA	4	"HERC3,HERC5,PIGY,PYURF"
TCGA.AG.3909.01A	4	89396955	100789209	319	-0.0554	NEUTRAL	NA	35	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BMPR1B,C4orf17,CCSER1,DAPP1,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HERC5,HPGDS,METAP1,MMRN1,MTTP,NAP1L5,PDHA2,PDLIM5,PIGY,PYURF,RAP1GDS1,SMARCAD1,SNCA,STPG2,TIGD2,TRMT10A,TSPAN5,UNC5C"
TCGA.CK.5914.01A	4	89444649	100803090	319	0.1835	NEUTRAL	NA	35	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BMPR1B,C4orf17,CCSER1,DAPP1,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HPGDS,LAMTOR3,METAP1,MMRN1,MTTP,NAP1L5,PDHA2,PDLIM5,PIGY,PYURF,RAP1GDS1,SMARCAD1,SNCA,STPG2,TIGD2,TRMT10A,TSPAN5,UNC5C"
TCGA.AA.3850	4	89527664	90116977	175	-0.03315	NEUTRAL	NA	4	"FAM13A,HERC3,NAP1L5,TIGD2"
TCGA.AA.3941	4	89527664	90116977	175	0.0531	NEUTRAL	NA	4	"FAM13A,HERC3,NAP1L5,TIGD2"
TCGA.AG.A00C.01A	4	89570943	100803090	306	-0.2388	NEUTRAL	NA	33	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BMPR1B,C4orf17,CCSER1,DAPP1,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HPGDS,LAMTOR3,METAP1,MMRN1,MTTP,NAP1L5,PDHA2,PDLIM5,RAP1GDS1,SMARCAD1,SNCA,STPG2,TIGD2,TRMT10A,TSPAN5,UNC5C"
TCGA.AG.A014.01A	4	89570943	110448431	704	-0.3065	NEUTRAL	NA	70	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ARHGEF38,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,COL25A1,CXXC4,CYP2U1,DAPP1,DDIT4L,DKK2,DNAJB14,EIF4E,EMCN,ETNPPL,FAM13A,GIMD1,GPRIN3,GRID2,GSTCD,H2AFZ,HADH,HERC3,HPGDS,INTS12,LAMTOR3,LEF1,MANBA,METAP1,MMRN1,MTTP,NAP1L5,NFKB1,NPNT,OSTC,PAPSS1,PDHA2,PDLIM5,PPA2,PPP3CA,RAP1GDS1,RPL34,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,STPG2,TACR3,TBCK,TET2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AA.A01F.01A	4	89627852	184607719	2349	-0.3639	NEUTRAL	NA	285	Too-Many
TCGA.AG.A016.01A	4	89649635	100871225	304	-0.1535	NEUTRAL	NA	33	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BMPR1B,C4orf17,CCSER1,DAPP1,DNAJB14,EIF4E,FAM13A,GPRIN3,GRID2,H2AFZ,HPGDS,LAMTOR3,METAP1,MMRN1,MTTP,PDHA2,PDLIM5,RAP1GDS1,SMARCAD1,SNCA,STPG2,TIGD2,TRMT10A,TSPAN5,UNC5C"
TCGA.AZ.4684.01A	4	89950572	108824339	568	0.0688	NEUTRAL	NA	60	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ARHGEF38,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,CXXC4,DAPP1,DDIT4L,DKK2,DNAJB14,EIF4E,EMCN,FAM13A,GIMD1,GPRIN3,GRID2,GSTCD,H2AFZ,HPGDS,INTS12,LAMTOR3,MANBA,METAP1,MMRN1,MTTP,NFKB1,NPNT,PAPSS1,PDHA2,PDLIM5,PPA2,PPP3CA,RAP1GDS1,SGMS2,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,STPG2,TACR3,TBCK,TET2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.F5.6863	4	89974553	103213304	3511	0.0226	NEUTRAL	NA	38	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BANK1,BMPR1B,C4orf17,CCSER1,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,FAM13A,GPRIN3,GRID2,H2AFZ,HPGDS,LAMTOR3,METAP1,MMRN1,MTTP,PDHA2,PDLIM5,PPP3CA,RAP1GDS1,SLC39A8,SMARCAD1,SNCA,STPG2,TIGD2,TRMT10A,TSPAN5,UNC5C"
TCGA.AA.3941	4	90124557	90542160	151	-0.3596	NEUTRAL	NA	1	GPRIN3
TCGA.D5.6536	4	90460510	190921708	28105	-0.0903	NEUTRAL	NA	310	Too-Many
TCGA.AA.3941	4	90618263	90709740	26	-0.297	NEUTRAL	NA	1	SNCA
TCGA.DM.A1HB	4	90644507	90819406	62	-0.4861	NEUTRAL	NA	2	"MMRN1,SNCA"
TCGA.AA.3941	4	90713063	90819406	49	0.3607	NEUTRAL	NA	2	"MMRN1,SNCA"
TCGA.AA.3982	4	90819673	91092937	63	-0.2593	NEUTRAL	NA	2	"CCSER1,MMRN1"
TCGA.DM.A1HB	4	90820792	103180148	3149	-0.039	NEUTRAL	NA	34	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BANK1,BMPR1B,C4orf17,CCSER1,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,GRID2,H2AFZ,HPGDS,LAMTOR3,METAP1,MMRN1,MTTP,PDHA2,PDLIM5,PPP3CA,RAP1GDS1,SLC39A8,SMARCAD1,STPG2,TRMT10A,TSPAN5,UNC5C"
TCGA.DY.A1DC	4	90837979	96783756	1566	0.0415	NEUTRAL	NA	10	"ATOH1,BMPR1B,CCSER1,GRID2,HPGDS,MMRN1,PDHA2,PDLIM5,SMARCAD1,UNC5C"
TCGA.AA.3982	4	91114978	91573203	112	-0.1718	NEUTRAL	NA	1	CCSER1
TCGA.AA.3693	4	91120177	91336935	57	-0.1228	NEUTRAL	NA	1	CCSER1
TCGA.AY.A8YK	4	91215313	91573595	93	-0.4345	NEUTRAL	NA	1	CCSER1
TCGA.EI.6882	4	91234497	91433793	52	-0.4826	NEUTRAL	NA	1	CCSER1
TCGA.AH.6544	4	91291406	91721939	99	-0.0629	NEUTRAL	NA	1	CCSER1
TCGA.AD.6965	4	91294367	190921708	27802	-0.3396	NEUTRAL	NA	308	Too-Many
TCGA.D5.6923	4	91294367	190921708	27792	-0.0144	NEUTRAL	NA	308	Too-Many
TCGA.G4.6303	4	91294367	190921708	27876	-0.0288	NEUTRAL	NA	308	Too-Many
TCGA.CM.4752	4	91298086	190921708	27845	-0.3089	NEUTRAL	NA	308	Too-Many
TCGA.AY.5543	4	91409880	190921708	27635	0.0232	NEUTRAL	NA	308	Too-Many
TCGA.3L.AA1B	4	91418247	183689444	25424	0	NEUTRAL	NA	271	Too-Many
TCGA.EI.6882	4	91450065	190921708	27790	0	NEUTRAL	NA	308	Too-Many
TCGA.AG.3902	4	91492301	167810890	20162	0.2833	NEUTRAL	NA	240	Too-Many
TCGA.AA.A02K.01A	4	91549160	104080190	432	-2.00E-04	NEUTRAL	NA	41	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,GRID2,H2AFZ,HPGDS,LAMTOR3,MANBA,METAP1,MTTP,NFKB1,PDHA2,PDLIM5,PPP3CA,RAP1GDS1,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,STPG2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AG.3893	4	91561338	91966363	112	0.334	NEUTRAL	NA	1	CCSER1
TCGA.AY.A8YK	4	91577259	91693755	27	0.0775	NEUTRAL	NA	1	CCSER1
TCGA.AZ.4681	4	91666669	91918088	71	-0.4746	NEUTRAL	NA	1	CCSER1
TCGA.DY.A1DD	4	91674459	160708750	18083	0.0165	NEUTRAL	NA	222	Too-Many
TCGA.A6.2678	4	91693772	190921708	27780	0.013	NEUTRAL	NA	308	Too-Many
TCGA.CM.4744.01A	4	91701568	190947494	3170	-0.0471	NEUTRAL	NA	309	Too-Many
TCGA.AH.6544	4	91740549	92032941	81	-0.3944	NEUTRAL	NA	1	CCSER1
TCGA.D5.6535	4	91740549	142986692	13358	-0.0756	NEUTRAL	NA	153	Too-Many
TCGA.A6.2683	4	91768656	190921708	27727	-0.45	NEUTRAL	NA	308	Too-Many
TCGA.AA.3867	4	91807172	92069250	76	-0.419	NEUTRAL	NA	1	CCSER1
TCGA.D5.6932	4	91822646	133513226	10699	0.0318	NEUTRAL	NA	130	Too-Many
TCGA.AY.A8YK	4	91862939	91911047	24	0.2424	NEUTRAL	NA	1	CCSER1
TCGA.AY.A8YK	4	91918088	92066775	42	-0.238	NEUTRAL	NA	1	CCSER1
TCGA.AZ.4681	4	91918869	190921708	27700	-0.045	NEUTRAL	NA	308	Too-Many
TCGA.A6.6780	4	91940808	141735406	12846	-0.016	NEUTRAL	NA	149	Too-Many
TCGA.F5.6464	4	91948998	92076287	36	-0.3443	NEUTRAL	NA	1	CCSER1
TCGA.DM.A0XD	4	91948998	190921708	27626	-0.0016	NEUTRAL	NA	308	Too-Many
TCGA.G4.6317	4	91948998	190921708	27720	0.0151	NEUTRAL	NA	308	Too-Many
TCGA.AA.3529	4	91966363	92159896	45	-0.3929	NEUTRAL	NA	1	CCSER1
TCGA.AG.3893	4	91966614	92295467	84	-0.0282	NEUTRAL	NA	1	CCSER1
TCGA.DM.A1D8	4	91978447	190921708	27664	0	NEUTRAL	NA	308	Too-Many
TCGA.AF.3911	4	91979093	190921708	27706	-0.414	NEUTRAL	NA	308	Too-Many
TCGA.AA.3982	4	92011509	108097117	3988	-0.1388	NEUTRAL	NA	53	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ARHGEF38,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,CXXC4,DAPP1,DDIT4L,DKK2,DNAJB14,EIF4E,EMCN,GIMD1,GRID2,GSTCD,H2AFZ,HPGDS,INTS12,LAMTOR3,MANBA,METAP1,MTTP,NFKB1,NPNT,PDHA2,PDLIM5,PPA2,PPP3CA,RAP1GDS1,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,STPG2,TACR3,TBCK,TET2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.DM.A28F	4	92012046	190921708	27618	0.0036	NEUTRAL	NA	308	Too-Many
TCGA.G4.6626	4	92033254	149097708	14789	0.3419	NEUTRAL	NA	177	Too-Many
TCGA.AH.6544	4	92033254	190921708	27630	-0.0765	NEUTRAL	NA	308	Too-Many
TCGA.AA.3715	4	92051678	190921708	27704	-0.0232	NEUTRAL	NA	308	Too-Many
TCGA.5M.AAT4	4	92056787	189743123	27364	-0.3234	NEUTRAL	NA	307	Too-Many
TCGA.DC.6682	4	92066775	190921708	27617	0.0549	NEUTRAL	NA	308	Too-Many
TCGA.AY.A8YK	4	92069250	146949557	14148	0.1619	NEUTRAL	NA	168	Too-Many
TCGA.AA.3867	4	92074041	103075982	2845	0	NEUTRAL	NA	32	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BANK1,BMPR1B,C4orf17,CCSER1,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,GRID2,H2AFZ,HPGDS,LAMTOR3,METAP1,MTTP,PDHA2,PDLIM5,PPP3CA,RAP1GDS1,SMARCAD1,STPG2,TRMT10A,TSPAN5,UNC5C"
TCGA.A6.3807	4	92093823	177628991	22739	-0.0217	NEUTRAL	NA	268	Too-Many
TCGA.F5.6464	4	92093823	190921708	27683	-0.0607	NEUTRAL	NA	308	Too-Many
TCGA.EI.6508	4	92114280	106808106	3703	0.0339	NEUTRAL	NA	48	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ARHGEF38,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,CXXC4,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,GRID2,GSTCD,H2AFZ,HPGDS,INTS12,LAMTOR3,MANBA,METAP1,MTTP,NFKB1,PDHA2,PDLIM5,PPA2,PPP3CA,RAP1GDS1,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,STPG2,TACR3,TET2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AA.3529	4	92167583	127310451	9203	0.0081	NEUTRAL	NA	119	Too-Many
TCGA.EF.5830	4	92184079	190921708	27602	-0.0457	NEUTRAL	NA	308	Too-Many
TCGA.AZ.4614	4	92193155	92504763	85	-0.1698	NEUTRAL	NA	1	CCSER1
TCGA.D5.6540	4	92193155	190921708	27592	-0.016	NEUTRAL	NA	308	Too-Many
TCGA.T9.A92H	4	92208799	190921708	27650	-0.2703	NEUTRAL	NA	308	Too-Many
TCGA.AG.3893	4	92308383	190921708	27399	0.285	NEUTRAL	NA	308	Too-Many
TCGA.AA.3877	4	92367595	190921708	27608	-0.0165	NEUTRAL	NA	308	Too-Many
TCGA.AF.3913	4	92408132	190921708	27499	-0.0738	NEUTRAL	NA	308	Too-Many
TCGA.AZ.4614	4	92520418	167455576	19686	0.2657	NEUTRAL	NA	239	Too-Many
TCGA.AA.3941	4	94579639	96385316	595	-0.1397	NEUTRAL	NA	7	"ATOH1,BMPR1B,GRID2,HPGDS,PDLIM5,SMARCAD1,UNC5C"
TCGA.CM.6675	4	94583839	142590102	12581	-0.1345	NEUTRAL	NA	151	Too-Many
TCGA.G4.6294	4	94613157	190921708	27196	0.0264	NEUTRAL	NA	307	Too-Many
TCGA.F4.6808	4	94674018	97759913	967	0.0575	NEUTRAL	NA	8	"ATOH1,BMPR1B,GRID2,HPGDS,PDHA2,PDLIM5,SMARCAD1,UNC5C"
TCGA.AA.A01K.01A	4	94751831	95191828	11	0.1882	NEUTRAL	NA	1	SMARCAD1
TCGA.AA.A00L.01A	4	95129504	95583546	37	-0.3616	NEUTRAL	NA	3	"HPGDS,PDLIM5,SMARCAD1"
TCGA.AA.A01K.01A	4	95198155	100803090	199	0.3407	NEUTRAL	NA	23	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,BMPR1B,C4orf17,DAPP1,EIF4E,HPGDS,LAMTOR3,METAP1,MTTP,PDHA2,PDLIM5,RAP1GDS1,SMARCAD1,STPG2,TRMT10A,TSPAN5,UNC5C"
TCGA.QG.A5YX	4	95559082	117148895	5674	0.0555	NEUTRAL	NA	81	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ALPK1,ANK2,AP1AR,ARHGEF38,ARSJ,BANK1,BDH2,BMPR1B,C4orf17,C4orf32,CAMK2D,CASP6,CCDC109B,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DAPP1,DDIT4L,DKK2,DNAJB14,EGF,EIF4E,ELOVL6,EMCN,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,H2AFZ,HADH,INTS12,LAMTOR3,LARP7,LEF1,LRIT3,MANBA,METAP1,MTTP,NDST4,NEUROG2,NFKB1,NPNT,OSTC,PAPSS1,PDHA2,PDLIM5,PITX2,PLA2G12A,PPA2,PPP3CA,RAP1GDS1,RPL34,RRH,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,STPG2,TACR3,TBCK,TET2,TIFA,TRMT10A,TSPAN5,UBE2D3,UGT8,UNC5C,ZGRF1"
TCGA.CK.4951	4	96456549	97122590	227	-0.0121	NEUTRAL	NA	2	"PDHA2,UNC5C"
TCGA.DY.A1DC	4	96800294	97931373	236	0.0178	NEUTRAL	NA	0	None
TCGA.F4.6460	4	97164881	105351504	1977	-0.2585	NEUTRAL	NA	33	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,BANK1,BDH2,C4orf17,CENPE,CISD2,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,H2AFZ,LAMTOR3,MANBA,METAP1,MTTP,NFKB1,PPP3CA,RAP1GDS1,SLC39A8,SLC9B1,SLC9B2,STPG2,TACR3,TRMT10A,TSPAN5,UBE2D3"
TCGA.DY.A1DC	4	97974446	102832258	1244	0.0559	NEUTRAL	NA	23	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,BANK1,C4orf17,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,H2AFZ,LAMTOR3,METAP1,MTTP,PPP3CA,RAP1GDS1,STPG2,TRMT10A,TSPAN5"
TCGA.F4.6808	4	98575318	134297362	9193	0.0494	NEUTRAL	NA	122	Too-Many
TCGA.AA.3941	4	98583099	102849218	1142	-0.2343	NEUTRAL	NA	23	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,BANK1,C4orf17,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,H2AFZ,LAMTOR3,METAP1,MTTP,PPP3CA,RAP1GDS1,STPG2,TRMT10A,TSPAN5"
TCGA.CK.4951	4	98989069	111396527	3213	0.0025	NEUTRAL	NA	63	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ARHGEF38,BANK1,BDH2,C4orf17,CASP6,CCDC109B,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DAPP1,DDIT4L,DKK2,DNAJB14,EGF,EIF4E,ELOVL6,EMCN,ETNPPL,GAR1,GIMD1,GSTCD,H2AFZ,HADH,INTS12,LAMTOR3,LEF1,LRIT3,MANBA,METAP1,MTTP,NFKB1,NPNT,OSTC,PAPSS1,PLA2G12A,PPA2,PPP3CA,RAP1GDS1,RPL34,RRH,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,STPG2,TACR3,TBCK,TET2,TRMT10A,TSPAN5,UBE2D3"
TCGA.AG.3611.01A	4	99802140	99850017	7	0.1148	NEUTRAL	NA	1	EIF4E
TCGA.A6.3808.01A	4	100009754	103790195	206	0.2845	NEUTRAL	NA	23	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,BANK1,C4orf17,CISD2,DAPP1,DDIT4L,DNAJB14,EMCN,H2AFZ,LAMTOR3,MANBA,MTTP,NFKB1,PPP3CA,SLC39A8,TRMT10A,UBE2D3"
TCGA.AG.A008.01A	4	100045509	106163458	295	-0.3031	NEUTRAL	NA	29	"ADH1A,ADH1B,ADH1C,ADH4,ADH6,ADH7,BANK1,BDH2,C4orf17,CENPE,CISD2,CXXC4,DAPP1,DDIT4L,DNAJB14,EMCN,H2AFZ,LAMTOR3,MANBA,MTTP,NFKB1,PPP3CA,SLC39A8,SLC9B1,SLC9B2,TACR3,TET2,TRMT10A,UBE2D3"
TCGA.AG.3611.01A	4	100045509	113469362	553	-0.3953	NEUTRAL	NA	65	"ADH1A,ADH1B,ADH1C,ADH4,ADH6,ADH7,AIMP1,ALPK1,AP1AR,ARHGEF38,BANK1,BDH2,C4orf17,C4orf32,CASP6,CCDC109B,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DAPP1,DDIT4L,DKK2,DNAJB14,EGF,ELOVL6,EMCN,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,H2AFZ,HADH,INTS12,LAMTOR3,LEF1,LRIT3,MANBA,MTTP,NEUROG2,NFKB1,NPNT,OSTC,PAPSS1,PITX2,PLA2G12A,PPA2,PPP3CA,RPL34,RRH,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,TIFA,TRMT10A,UBE2D3,ZGRF1"
TCGA.AA.A00F.01A	4	100239915	100273727	10	-0.0353	NEUTRAL	NA	2	"ADH1B,ADH1C"
TCGA.AA.A00N.01A	4	100257824	100273727	8	-0.5057	NEUTRAL	NA	1	ADH1C
TCGA.AA.A00F.01A	4	100334220	100543807	40	-0.4487	NEUTRAL	NA	4	"ADH7,C4orf17,MTTP,TRMT10A"
TCGA.AA.A00F.01A	4	100803090	101108806	21	-0.0739	NEUTRAL	NA	4	"DDIT4L,DNAJB14,H2AFZ,LAMTOR3"
TCGA.AG.A00C.01A	4	100805179	101108806	20	0.2858	NEUTRAL	NA	4	"DDIT4L,DNAJB14,H2AFZ,LAMTOR3"
TCGA.AA.A01K.01A	4	100805179	183672913	2453	-0.0175	NEUTRAL	NA	246	Too-Many
TCGA.CK.5914.01A	4	100827621	100867567	6	0.016	NEUTRAL	NA	1	DNAJB14
TCGA.AG.4009.01A	4	101108806	107216191	249	-0.0487	NEUTRAL	NA	22	"ARHGEF38,BANK1,BDH2,CENPE,CISD2,CXXC4,DDIT4L,EMCN,GSTCD,INTS12,MANBA,NFKB1,NPNT,PPA2,PPP3CA,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,UBE2D3"
TCGA.AA.A010.01A	4	101108806	109010234	320	0.1015	NEUTRAL	NA	30	"AIMP1,ARHGEF38,BANK1,BDH2,CENPE,CISD2,CXXC4,CYP2U1,DDIT4L,DKK2,EMCN,GIMD1,GSTCD,HADH,INTS12,LEF1,MANBA,NFKB1,NPNT,PAPSS1,PPA2,PPP3CA,SGMS2,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,UBE2D3"
TCGA.AG.3906.01A	4	101108806	110638656	396	-0.0461	NEUTRAL	NA	38	"AIMP1,ARHGEF38,BANK1,BDH2,CASP6,CCDC109B,CENPE,CISD2,COL25A1,CXXC4,CYP2U1,DDIT4L,DKK2,EMCN,ETNPPL,GIMD1,GSTCD,HADH,INTS12,LEF1,MANBA,NFKB1,NPNT,OSTC,PAPSS1,PLA2G12A,PPA2,PPP3CA,RPL34,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,UBE2D3"
TCGA.CK.5914.01A	4	101110995	103189002	47	0.1429	NEUTRAL	NA	5	"BANK1,DDIT4L,EMCN,PPP3CA,SLC39A8"
TCGA.AG.A00C.01A	4	101110995	104104304	166	-0.1987	NEUTRAL	NA	13	"BANK1,BDH2,CENPE,CISD2,DDIT4L,EMCN,MANBA,NFKB1,PPP3CA,SLC39A8,SLC9B1,SLC9B2,UBE2D3"
TCGA.AA.A00F.01A	4	101110995	108955343	292	-0.3428	NEUTRAL	NA	29	"AIMP1,ARHGEF38,BANK1,BDH2,CENPE,CISD2,CXXC4,CYP2U1,DDIT4L,DKK2,EMCN,GIMD1,GSTCD,HADH,INTS12,MANBA,NFKB1,NPNT,PAPSS1,PPA2,PPP3CA,SGMS2,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,UBE2D3"
TCGA.AG.3909.01A	4	101331409	103488113	52	0.0021	NEUTRAL	NA	5	"BANK1,EMCN,NFKB1,PPP3CA,SLC39A8"
TCGA.AG.A016.01A	4	101331409	190947494	2763	-0.155	NEUTRAL	NA	280	Too-Many
TCGA.DY.A1DC	4	102865303	111727162	2207	0.0364	NEUTRAL	NA	43	"AIMP1,ARHGEF38,BANK1,BDH2,CASP6,CCDC109B,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,HADH,INTS12,LEF1,LRIT3,MANBA,NFKB1,NPNT,OSTC,PAPSS1,PITX2,PLA2G12A,PPA2,RPL34,RRH,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,UBE2D3"
TCGA.AA.3941	4	102940787	102967860	11	-0.4645	NEUTRAL	NA	1	BANK1
TCGA.AA.3941	4	102971015	103007590	13	0.1761	NEUTRAL	NA	1	BANK1
TCGA.AA.3941	4	103125219	103329489	65	-0.4376	NEUTRAL	NA	1	SLC39A8
TCGA.AA.3867	4	103137878	112209737	2267	0.1023	NEUTRAL	NA	42	"AIMP1,ARHGEF38,BDH2,CASP6,CCDC109B,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,HADH,INTS12,LEF1,LRIT3,MANBA,NFKB1,NPNT,OSTC,PAPSS1,PITX2,PLA2G12A,PPA2,RPL34,RRH,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,UBE2D3"
TCGA.AA.A00N.01A	4	103174482	103458968	14	-0.4855	NEUTRAL	NA	2	"NFKB1,SLC39A8"
TCGA.DM.A1HB	4	103236294	130153545	6822	-0.0304	NEUTRAL	NA	98	"ADAD1,AIMP1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARHGEF38,ARSJ,BBS12,BBS7,BDH2,C4orf29,C4orf3,C4orf32,C4orf33,CAMK2D,CASP6,CCDC109B,CCNA2,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,EXOSC9,FABP2,FAT4,FGF2,GAR1,GIMD1,GSTCD,HADH,HSPA4L,IL2,IL21,INTS12,INTU,JADE1,KIAA1109,LARP1B,LARP7,LEF1,LRIT3,MAD2L1,MANBA,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NFKB1,NPNT,NUDT6,OSTC,PAPSS1,PDE5A,PGRMC2,PITX2,PLA2G12A,PLK4,PPA2,PRDM5,PRSS12,QRFPR,RPL34,RRH,SCLT1,SEC24B,SEC24D,SGMS2,SLC25A31,SLC39A8,SLC9B1,SLC9B2,SPATA5,SPRY1,SYNPO2,TACR3,TBCK,TET2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UBE2D3,UGT8,USP53,ZGRF1"
TCGA.AA.3941	4	103333009	104139903	149	0.1312	NEUTRAL	NA	8	"BDH2,CENPE,CISD2,MANBA,NFKB1,SLC9B1,SLC9B2,UBE2D3"
TCGA.AG.3909.01A	4	103497981	103555898	20	0.3293	NEUTRAL	NA	2	"MANBA,NFKB1"
TCGA.AG.3909.01A	4	103556974	103978911	44	-0.0986	NEUTRAL	NA	5	"CISD2,MANBA,SLC9B1,SLC9B2,UBE2D3"
TCGA.CK.5914.01A	4	103571665	103808481	24	0.1314	NEUTRAL	NA	4	"CISD2,MANBA,SLC9B1,UBE2D3"
TCGA.AA.A00N.01A	4	103718497	103808481	11	-0.5115	NEUTRAL	NA	3	"CISD2,SLC9B1,UBE2D3"
TCGA.AA.A00L.01A	4	103831584	104029919	29	-0.4713	NEUTRAL	NA	4	"BDH2,CENPE,SLC9B1,SLC9B2"
TCGA.AG.A01W.01A	4	103863043	104009637	13	0.3078	NEUTRAL	NA	3	"BDH2,SLC9B1,SLC9B2"
TCGA.CK.5914.01A	4	103910930	103971359	10	0.1039	NEUTRAL	NA	2	"SLC9B1,SLC9B2"
TCGA.AA.3861.01A	4	103910930	108935549	194	0.0389	NEUTRAL	NA	20	"AIMP1,ARHGEF38,BDH2,CENPE,CXXC4,CYP2U1,DKK2,GIMD1,GSTCD,HADH,INTS12,NPNT,PAPSS1,PPA2,SGMS2,SLC9B1,SLC9B2,TACR3,TBCK,TET2"
TCGA.AA.3862.01A	4	103910930	190947494	2777	-0.242	NEUTRAL	NA	272	Too-Many
TCGA.AA.A00N.01A	4	103947479	103978911	9	-0.4418	NEUTRAL	NA	1	SLC9B2
TCGA.AG.3909.01A	4	104012323	104104304	43	-0.0466	NEUTRAL	NA	2	"BDH2,CENPE"
TCGA.CK.5914.01A	4	104016300	104106906	42	0.1301	NEUTRAL	NA	2	"BDH2,CENPE"
TCGA.AG.A01W.01A	4	104025778	104282307	47	-0.1428	NEUTRAL	NA	1	CENPE
TCGA.AA.A02K.01A	4	104081736	104101430	8	-0.3244	NEUTRAL	NA	1	CENPE
TCGA.AA.A00A.01A	4	104084577	129792483	770	-0.4545	NEUTRAL	NA	88	"ADAD1,AIMP1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARHGEF38,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf32,CAMK2D,CASP6,CCDC109B,CCNA2,CENPE,CFI,COL25A1,CXXC4,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,EXOSC9,FABP2,FAT4,FGF2,GAR1,GIMD1,GSTCD,HADH,HSPA4L,IL2,IL21,INTS12,INTU,JADE1,KIAA1109,LARP1B,LARP7,LEF1,LRIT3,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NPNT,NUDT6,OSTC,PAPSS1,PDE5A,PGRMC2,PITX2,PLA2G12A,PLK4,PPA2,PRDM5,PRSS12,QRFPR,RPL34,RRH,SEC24B,SEC24D,SGMS2,SLC25A31,SPATA5,SPRY1,SYNPO2,TACR3,TBCK,TET2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AA.A00D.01A	4	104084577	187476289	2153	-0.493	NEUTRAL	NA	263	Too-Many
TCGA.AA.A02K.01A	4	104102443	110619407	244	0.0508	NEUTRAL	NA	25	"AIMP1,ARHGEF38,CASP6,CCDC109B,CENPE,COL25A1,CXXC4,CYP2U1,DKK2,ETNPPL,GIMD1,GSTCD,HADH,INTS12,LEF1,NPNT,OSTC,PAPSS1,PPA2,RPL34,SEC24B,SGMS2,TACR3,TBCK,TET2"
TCGA.AA.A00N.01A	4	104119358	105411871	8	0.2661	NEUTRAL	NA	3	"CENPE,CXXC4,TACR3"
TCGA.DM.A28M.01A	4	104119358	107133883	72	0.012	NEUTRAL	NA	10	"ARHGEF38,CENPE,CXXC4,GSTCD,INTS12,NPNT,PPA2,TACR3,TBCK,TET2"
TCGA.CK.5914.01A	4	104119358	107168275	83	0.2309	NEUTRAL	NA	10	"ARHGEF38,CENPE,CXXC4,GSTCD,INTS12,NPNT,PPA2,TACR3,TBCK,TET2"
TCGA.AA.3941	4	104140128	104675511	126	-0.2965	NEUTRAL	NA	1	TACR3
TCGA.AG.A01W.01A	4	104299639	106536799	41	0.1219	NEUTRAL	NA	5	"ARHGEF38,CXXC4,PPA2,TACR3,TET2"
TCGA.AA.3681	4	104495331	190921708	24539	-0.0444	NEUTRAL	NA	267	Too-Many
TCGA.AG.3909.01A	4	104510850	107229925	81	-0.0936	NEUTRAL	NA	9	"ARHGEF38,CXXC4,GSTCD,INTS12,NPNT,PPA2,TACR3,TBCK,TET2"
TCGA.AG.A00C.01A	4	104510850	110452504	206	-0.1474	NEUTRAL	NA	22	"AIMP1,ARHGEF38,COL25A1,CXXC4,CYP2U1,DKK2,ETNPPL,GIMD1,GSTCD,HADH,INTS12,LEF1,NPNT,OSTC,PAPSS1,PPA2,RPL34,SEC24B,SGMS2,TACR3,TBCK,TET2"
TCGA.G4.6295	4	104515949	112075172	1939	-0.3712	NEUTRAL	NA	33	"AIMP1,ARHGEF38,CASP6,CCDC109B,CFI,COL25A1,CXXC4,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,HADH,INTS12,LEF1,LRIT3,NPNT,OSTC,PAPSS1,PITX2,PLA2G12A,PPA2,RPL34,RRH,SEC24B,SGMS2,TACR3,TBCK,TET2"
TCGA.DM.A1D7	4	104679434	190921708	24476	-0.1087	NEUTRAL	NA	266	Too-Many
TCGA.AF.A56N	4	105779793	190921708	24174	-0.0494	NEUTRAL	NA	265	Too-Many
TCGA.AA.3941	4	105883157	108097117	509	-0.3046	NEUTRAL	NA	10	"AIMP1,ARHGEF38,DKK2,GIMD1,GSTCD,INTS12,NPNT,PPA2,TBCK,TET2"
TCGA.AG.A008.01A	4	106193712	106197005	3	0.343	NEUTRAL	NA	1	TET2
TCGA.AG.A008.01A	4	106290807	113460656	317	-0.278	NEUTRAL	NA	36	"AIMP1,ALPK1,AP1AR,ARHGEF38,C4orf32,CASP6,CCDC109B,CFI,COL25A1,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,HADH,INTS12,LEF1,LRIT3,NEUROG2,NPNT,OSTC,PAPSS1,PITX2,PLA2G12A,PPA2,RPL34,RRH,SEC24B,SGMS2,TBCK,TIFA,ZGRF1"
TCGA.AA.A00N.01A	4	106291915	107237640	68	0.3006	NEUTRAL	NA	7	"AIMP1,ARHGEF38,GSTCD,INTS12,NPNT,PPA2,TBCK"
TCGA.AG.A01W.01A	4	106539612	113901280	359	-0.2378	NEUTRAL	NA	37	"AIMP1,ALPK1,ANK2,AP1AR,ARHGEF38,C4orf32,CASP6,CCDC109B,CFI,COL25A1,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,HADH,INTS12,LARP7,LEF1,LRIT3,NEUROG2,NPNT,OSTC,PAPSS1,PITX2,PLA2G12A,RPL34,RRH,SEC24B,SGMS2,TBCK,TIFA,ZGRF1"
TCGA.EI.6508	4	106900158	190543147	23891	0.0172	NEUTRAL	NA	258	Too-Many
TCGA.AA.3697	4	106996676	116739589	2645	-0.253	NEUTRAL	NA	37	"AIMP1,ALPK1,ANK2,AP1AR,ARSJ,C4orf32,CAMK2D,CASP6,CCDC109B,CFI,COL25A1,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,GIMD1,HADH,LARP7,LEF1,LRIT3,NDST4,NEUROG2,OSTC,PAPSS1,PITX2,PLA2G12A,RPL34,RRH,SEC24B,SGMS2,TBCK,TIFA,UGT8,ZGRF1"
TCGA.AA.A01Q.01A	4	107016609	107845665	30	-0.3657	NEUTRAL	NA	4	"AIMP1,DKK2,GIMD1,TBCK"
TCGA.DM.A28M.01A	4	107156379	110427442	132	0.0853	NEUTRAL	NA	14	"AIMP1,COL25A1,CYP2U1,DKK2,ETNPPL,GIMD1,HADH,LEF1,OSTC,PAPSS1,RPL34,SEC24B,SGMS2,TBCK"
TCGA.CL.4957	4	107257695	138873655	8176	-0.4027	NEUTRAL	NA	83	"ADAD1,AIMP1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf32,C4orf33,CAMK2D,CASP6,CCDC109B,CCNA2,CFI,COL25A1,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,EXOSC9,FABP2,FAT4,FGF2,GAR1,GIMD1,HADH,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,LARP7,LEF1,LRIT3,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,OSTC,PABPC4L,PAPSS1,PCDH10,PCDH18,PDE5A,PGRMC2,PITX2,PLA2G12A,PLK4,PRDM5,PRSS12,QRFPR,RPL34,RRH,SCLT1,SEC24B,SEC24D,SGMS2,SLC25A31,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AG.3909.01A	4	107268655	108831464	22	0.06	NEUTRAL	NA	5	"AIMP1,DKK2,GIMD1,PAPSS1,SGMS2"
TCGA.AG.4009.01A	4	107845084	109010234	42	-0.1521	NEUTRAL	NA	6	"CYP2U1,DKK2,HADH,LEF1,PAPSS1,SGMS2"
TCGA.AA.A01Q.01A	4	107846909	190884165	2066	0.05	NEUTRAL	NA	256	Too-Many
TCGA.AA.3982	4	108108553	108388645	90	-0.2585	NEUTRAL	NA	0	None
TCGA.AA.3982	4	108390498	111663477	914	0.2388	NEUTRAL	NA	21	"CASP6,CCDC109B,CFI,COL25A1,CYP2U1,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,HADH,LEF1,LRIT3,OSTC,PAPSS1,PITX2,PLA2G12A,RPL34,RRH,SEC24B,SGMS2"
TCGA.AA.3941	4	108401095	111657502	910	0.0472	NEUTRAL	NA	21	"CASP6,CCDC109B,CFI,COL25A1,CYP2U1,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,HADH,LEF1,LRIT3,OSTC,PAPSS1,PITX2,PLA2G12A,RPL34,RRH,SEC24B,SGMS2"
TCGA.AA.A00N.01A	4	108581075	108852813	12	0.1346	NEUTRAL	NA	3	"CYP2U1,PAPSS1,SGMS2"
TCGA.AA.3850	4	108587770	111452170	820	0.01835	NEUTRAL	NA	20	"CASP6,CCDC109B,CFI,COL25A1,CYP2U1,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,HADH,LEF1,LRIT3,OSTC,PAPSS1,PLA2G12A,RPL34,RRH,SEC24B,SGMS2"
TCGA.AG.A02N	4	108623766	190921708	23522	-0.0041	NEUTRAL	NA	255	Too-Many
TCGA.AG.3882	4	108626849	109009654	89	-0.3233	NEUTRAL	NA	5	"CYP2U1,HADH,LEF1,PAPSS1,SGMS2"
TCGA.CK.5914.01A	4	108829671	108969778	17	-0.1109	NEUTRAL	NA	4	"CYP2U1,HADH,LEF1,SGMS2"
TCGA.AA.3509.01A	4	108829671	109086190	27	0.0902	NEUTRAL	NA	4	"CYP2U1,HADH,LEF1,SGMS2"
TCGA.AZ.4684.01A	4	108829671	114469774	335	-0.2638	NEUTRAL	NA	29	"ALPK1,ANK2,AP1AR,C4orf32,CAMK2D,CASP6,CCDC109B,CFI,COL25A1,CYP2U1,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,HADH,LARP7,LEF1,LRIT3,NEUROG2,OSTC,PITX2,PLA2G12A,RPL34,RRH,SEC24B,SGMS2,TIFA,ZGRF1"
TCGA.AA.3844	4	108838590	109135143	77	0.1702	NEUTRAL	NA	3	"CYP2U1,HADH,LEF1"
TCGA.AG.3909.01A	4	108866097	108930883	5	-0.4106	NEUTRAL	NA	2	"CYP2U1,HADH"
TCGA.AA.A00N.01A	4	108911042	108969778	10	0.377	NEUTRAL	NA	2	"HADH,LEF1"
TCGA.AG.3909.01A	4	108935549	108969778	8	-0.0112	NEUTRAL	NA	2	"HADH,LEF1"
TCGA.AA.A00F.01A	4	108984703	110673555	58	-0.0421	NEUTRAL	NA	10	"CASP6,CCDC109B,CFI,COL25A1,ETNPPL,LEF1,OSTC,PLA2G12A,RPL34,SEC24B"
TCGA.AG.3882	4	109009695	139580309	7998	0.015	NEUTRAL	NA	77	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf32,C4orf33,CAMK2D,CASP6,CCDC109B,CCNA2,CFI,COL25A1,EGF,ELOVL6,ENPEP,ETNPPL,EXOSC9,FABP2,FAT4,FGF2,GAR1,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,LARP7,LEF1,LRIT3,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,OSTC,PABPC4L,PCDH10,PCDH18,PDE5A,PGRMC2,PITX2,PLA2G12A,PLK4,PRDM5,PRSS12,QRFPR,RPL34,RRH,SCLT1,SEC24B,SEC24D,SLC25A31,SLC7A11,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AA.3509.01A	4	109088664	109680877	19	-0.3805	NEUTRAL	NA	4	"ETNPPL,LEF1,OSTC,RPL34"
TCGA.AA.3844	4	109138985	110087433	281	-0.1515	NEUTRAL	NA	4	"COL25A1,ETNPPL,OSTC,RPL34"
TCGA.AG.3909.01A	4	109543051	109588315	7	0.1373	NEUTRAL	NA	2	"OSTC,RPL34"
TCGA.CK.5914.01A	4	109543051	109588315	7	0.2593	NEUTRAL	NA	2	"OSTC,RPL34"
TCGA.AG.4009.01A	4	109543051	110619381	91	-0.1155	NEUTRAL	NA	7	"CASP6,CCDC109B,COL25A1,ETNPPL,OSTC,RPL34,SEC24B"
TCGA.A6.3810.01A	4	109663593	128886161	774	0.1715	NEUTRAL	NA	64	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf3,C4orf32,CAMK2D,CASP6,CCDC109B,CCNA2,CFI,COL25A1,EGF,ELOVL6,ENPEP,ETNPPL,EXOSC9,FABP2,FAT4,FGF2,GAR1,HSPA4L,IL2,IL21,INTU,KIAA1109,LARP7,LRIT3,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PITX2,PLA2G12A,PLK4,PRDM5,PRSS12,QRFPR,RRH,SEC24B,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AG.A02G.01A	4	109667524	190947494	2455	-0.0179	NEUTRAL	NA	249	Too-Many
TCGA.AA.3509.01A	4	109681316	110433084	49	0.2803	NEUTRAL	NA	3	"COL25A1,ETNPPL,SEC24B"
TCGA.AA.A010.01A	4	109734996	109971213	37	-0.2715	NEUTRAL	NA	1	COL25A1
TCGA.AG.3909.01A	4	109734996	110585408	61	-0.012	NEUTRAL	NA	3	"CCDC109B,COL25A1,SEC24B"
TCGA.AA.3861.01A	4	109839294	144474218	1020	0.0798	NEUTRAL	NA	95	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf32,C4orf33,CAMK2D,CASP6,CCDC109B,CCNA2,CCRN4L,CFI,CLGN,COL25A1,EGF,ELF2,ELMOD2,ELOVL6,ENPEP,EXOSC9,FABP2,FAT4,FGF2,GAB1,GAR1,HSPA4L,IL15,IL2,IL21,INPP4B,INTU,JADE1,KIAA1109,LARP1B,LARP7,LRIT3,MAD2L1,MAML3,METTL14,MFSD8,MGARP,MGAT4D,MGST2,MYOZ2,NAA15,NDNF,NDST3,NDST4,NDUFC1,NEUROG2,NUDT6,PABPC4L,PCDH10,PCDH18,PDE5A,PGRMC2,PITX2,PLA2G12A,PLK4,PRDM5,PRSS12,QRFPR,RAB33B,RNF150,RRH,SCLT1,SCOC,SEC24B,SEC24D,SETD7,SLC25A31,SLC7A11,SMARCA5,SPATA5,SPRY1,SYNPO2,TBC1D9,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UCP1,UGT8,USP38,USP53,ZGRF1,ZNF330"
TCGA.CK.5914.01A	4	109895436	110585408	33	-0.3554	NEUTRAL	NA	3	"CCDC109B,COL25A1,SEC24B"
TCGA.AA.3844	4	110180663	115662803	1615	-0.2515	NEUTRAL	NA	24	"ALPK1,ANK2,AP1AR,ARSJ,C4orf32,CAMK2D,CASP6,CCDC109B,CFI,COL25A1,EGF,ELOVL6,ENPEP,GAR1,LARP7,LRIT3,NEUROG2,PITX2,PLA2G12A,RRH,SEC24B,TIFA,UGT8,ZGRF1"
TCGA.A6.6781	4	110180663	128631858	4508	-0.2975	NEUTRAL	NA	59	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf3,C4orf32,CAMK2D,CASP6,CCDC109B,CCNA2,CFI,COL25A1,EGF,ELOVL6,ENPEP,EXOSC9,FABP2,FAT4,FGF2,GAR1,IL2,IL21,INTU,KIAA1109,LARP7,LRIT3,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PITX2,PLA2G12A,PRDM5,PRSS12,QRFPR,RRH,SEC24B,SEC24D,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.DM.A28M.01A	4	110431118	110619381	30	-0.418	NEUTRAL	NA	3	"CASP6,CCDC109B,SEC24B"
TCGA.AA.3509.01A	4	110434856	110619381	28	-0.4808	NEUTRAL	NA	3	"CASP6,CCDC109B,SEC24B"
TCGA.AA.A010.01A	4	110442224	110687693	41	-0.1674	NEUTRAL	NA	5	"CASP6,CCDC109B,CFI,PLA2G12A,SEC24B"
TCGA.AG.A014.01A	4	110451418	110670615	26	0.2166	NEUTRAL	NA	5	"CASP6,CCDC109B,CFI,PLA2G12A,SEC24B"
TCGA.AG.A00C.01A	4	110453758	110678829	27	0.2975	NEUTRAL	NA	5	"CASP6,CCDC109B,CFI,PLA2G12A,SEC24B"
TCGA.CK.5914.01A	4	110624440	110663598	7	-0.4524	NEUTRAL	NA	3	"CASP6,CFI,PLA2G12A"
TCGA.AA.3509.01A	4	110624440	113184092	91	0.2385	NEUTRAL	NA	12	"AP1AR,C4orf32,CASP6,CFI,EGF,ELOVL6,ENPEP,GAR1,LRIT3,PITX2,PLA2G12A,RRH"
TCGA.DM.A28M.01A	4	110624440	113184092	92	0.0063	NEUTRAL	NA	12	"AP1AR,C4orf32,CASP6,CFI,EGF,ELOVL6,ENPEP,GAR1,LRIT3,PITX2,PLA2G12A,RRH"
TCGA.AG.3909.01A	4	110650727	111482510	73	0.0355	NEUTRAL	NA	8	"CFI,EGF,ELOVL6,ENPEP,GAR1,LRIT3,PLA2G12A,RRH"
TCGA.AG.4009.01A	4	110662041	111482510	72	-0.0584	NEUTRAL	NA	7	"CFI,EGF,ELOVL6,ENPEP,GAR1,LRIT3,RRH"
TCGA.CK.5914.01A	4	110667331	110758574	21	-0.1722	NEUTRAL	NA	3	"CFI,GAR1,RRH"
TCGA.AA.A02K.01A	4	110670327	125599795	602	0.0238	NEUTRAL	NA	52	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf3,C4orf32,CAMK2D,CCNA2,CFI,EGF,ELOVL6,ENPEP,EXOSC9,FABP2,FGF2,GAR1,IL2,IL21,KIAA1109,LARP7,LRIT3,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PITX2,PRDM5,PRSS12,QRFPR,RRH,SEC24D,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AG.A014.01A	4	110673555	122589555	376	-0.3381	NEUTRAL	NA	37	"ALPK1,ANK2,ANXA5,AP1AR,ARSJ,C4orf3,C4orf32,CAMK2D,CFI,EGF,ELOVL6,ENPEP,FABP2,GAR1,LARP7,LRIT3,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,PDE5A,PITX2,PRDM5,PRSS12,QRFPR,RRH,SEC24D,SYNPO2,TIFA,TNIP3,TRAM1L1,UGT8,USP53,ZGRF1"
TCGA.AA.A00F.01A	4	110678829	128886161	546	-0.3358	NEUTRAL	NA	58	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf3,C4orf32,CAMK2D,CCNA2,CFI,EGF,ELOVL6,ENPEP,EXOSC9,FABP2,FAT4,FGF2,GAR1,HSPA4L,IL2,IL21,INTU,KIAA1109,LARP7,LRIT3,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PITX2,PLK4,PRDM5,PRSS12,QRFPR,RRH,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AG.A00C.01A	4	110681409	111441127	58	-0.2688	NEUTRAL	NA	7	"CFI,EGF,ELOVL6,ENPEP,GAR1,LRIT3,RRH"
TCGA.AG.3906.01A	4	110681409	119678829	273	-0.075	NEUTRAL	NA	25	"ALPK1,ANK2,AP1AR,ARSJ,C4orf32,CAMK2D,CFI,EGF,ELOVL6,ENPEP,GAR1,LARP7,LRIT3,METTL14,NDST3,NDST4,NEUROG2,PITX2,PRSS12,RRH,SEC24D,TIFA,TRAM1L1,UGT8,ZGRF1"
TCGA.A6.3808.01A	4	110682652	128802937	632	0.2998	NEUTRAL	NA	57	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf3,C4orf32,CAMK2D,CCNA2,CFI,EGF,ELOVL6,ENPEP,EXOSC9,FABP2,FAT4,FGF2,GAR1,HSPA4L,IL2,IL21,INTU,KIAA1109,LARP7,LRIT3,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PITX2,PLK4,PRDM5,PRSS12,QRFPR,RRH,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AA.A010.01A	4	110723003	113362076	95	0.2649	NEUTRAL	NA	12	"ALPK1,AP1AR,C4orf32,CFI,EGF,ELOVL6,ENPEP,GAR1,LRIT3,PITX2,RRH,TIFA"
TCGA.CK.5914.01A	4	110763608	111480756	49	0.2589	NEUTRAL	NA	5	"EGF,ELOVL6,ENPEP,LRIT3,RRH"
TCGA.EI.7002	4	110800096	115739427	1490	-0.2343	NEUTRAL	NA	15	"ALPK1,ANK2,AP1AR,ARSJ,C4orf32,CAMK2D,EGF,ELOVL6,ENPEP,LARP7,NEUROG2,PITX2,TIFA,UGT8,ZGRF1"
TCGA.AZ.4308	4	110893991	126919402	4382	0.025	NEUTRAL	NA	49	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf3,C4orf32,CAMK2D,CCNA2,EGF,ELOVL6,ENPEP,EXOSC9,FABP2,FAT4,FGF2,IL2,IL21,KIAA1109,LARP7,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PITX2,PRDM5,PRSS12,QRFPR,SEC24D,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.CK.4951	4	111396947	113251664	477	-0.5123	NEUTRAL	NA	6	"ALPK1,AP1AR,C4orf32,ENPEP,PITX2,TIFA"
TCGA.AG.A00C.01A	4	111452337	114027979	77	0.0142	NEUTRAL	NA	10	"ALPK1,ANK2,AP1AR,C4orf32,ENPEP,LARP7,NEUROG2,PITX2,TIFA,ZGRF1"
TCGA.CK.4948.01B	4	111482510	111781670	7	-0.3432	NEUTRAL	NA	2	"ENPEP,PITX2"
TCGA.CK.5914.01A	4	111482510	113462268	39	-0.1434	NEUTRAL	NA	8	"ALPK1,AP1AR,C4orf32,ENPEP,NEUROG2,PITX2,TIFA,ZGRF1"
TCGA.AA.3982	4	111669219	111727484	21	-0.2125	NEUTRAL	NA	0	None
TCGA.AA.3982	4	111734957	111867425	43	0.0797	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	111741437	111862434	38	0.136	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	4	111781670	119689281	204	-0.0842	NEUTRAL	NA	17	"ALPK1,ANK2,AP1AR,ARSJ,C4orf32,CAMK2D,LARP7,METTL14,NDST3,NDST4,NEUROG2,PRSS12,SEC24D,TIFA,TRAM1L1,UGT8,ZGRF1"
TCGA.AA.3982	4	111877130	112971903	281	-0.1836	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	111960685	112542698	143	0.0185	NEUTRAL	NA	0	None
TCGA.AA.3867	4	112233571	126988104	3994	-0.0035	NEUTRAL	NA	45	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf3,C4orf32,CAMK2D,CCNA2,EXOSC9,FABP2,FAT4,FGF2,IL2,IL21,KIAA1109,LARP7,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PRDM5,PRSS12,QRFPR,SEC24D,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AA.3850	4	112420308	112526681	23	-0.08035	NEUTRAL	NA	0	None
TCGA.AA.3941	4	112424764	115171249	834	-0.1847	NEUTRAL	NA	10	"ALPK1,ANK2,AP1AR,ARSJ,C4orf32,CAMK2D,LARP7,NEUROG2,TIFA,ZGRF1"
TCGA.DY.A1DC	4	112562713	115516890	912	0.0559	NEUTRAL	NA	10	"ALPK1,ANK2,AP1AR,ARSJ,C4orf32,CAMK2D,LARP7,NEUROG2,TIFA,ZGRF1"
TCGA.AA.3850	4	112566773	113079390	131	-0.31675	NEUTRAL	NA	1	C4orf32
TCGA.AA.3982	4	112972899	113775525	174	0.3021	NEUTRAL	NA	8	"ALPK1,ANK2,AP1AR,C4orf32,LARP7,NEUROG2,TIFA,ZGRF1"
TCGA.AA.3850	4	113088712	113811254	156	0.19105	NEUTRAL	NA	8	"ALPK1,ANK2,AP1AR,C4orf32,LARP7,NEUROG2,TIFA,ZGRF1"
TCGA.CK.4948.01B	4	113107837	128942240	608	0.0452	NEUTRAL	NA	51	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf32,CAMK2D,CCNA2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,KIAA1109,LARP7,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PLK4,PRDM5,PRSS12,QRFPR,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AA.3509.01A	4	113198991	114469774	118	0.1396	NEUTRAL	NA	7	"ALPK1,ANK2,CAMK2D,LARP7,NEUROG2,TIFA,ZGRF1"
TCGA.DM.A28M.01A	4	113198991	190947494	2373	0.004	NEUTRAL	NA	233	Too-Many
TCGA.CK.4951	4	113261667	141225246	7267	-0.0121	NEUTRAL	NA	67	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf33,CAMK2D,CCNA2,CCRN4L,ELF2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,LARP7,MAD2L1,MAML3,METTL14,MFSD8,MGARP,MGST2,MYOZ2,NAA15,NDNF,NDST3,NDST4,NDUFC1,NEUROG2,NUDT6,PABPC4L,PCDH10,PCDH18,PDE5A,PGRMC2,PLK4,PRDM5,PRSS12,QRFPR,RAB33B,SCLT1,SCOC,SEC24D,SETD7,SLC25A31,SLC7A11,SPATA5,SPRY1,SYNPO2,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AG.3909.01A	4	113332971	113362076	13	-0.0231	NEUTRAL	NA	1	ALPK1
TCGA.AG.A011.01A	4	113460656	113469362	6	0.3455	NEUTRAL	NA	1	ZGRF1
TCGA.AG.A008.01A	4	113461027	113502772	11	0.1579	NEUTRAL	NA	1	ZGRF1
TCGA.AA.A010.01A	4	113468404	114203784	52	0.0833	NEUTRAL	NA	3	"ANK2,LARP7,ZGRF1"
TCGA.AG.3611.01A	4	113474944	113578352	28	-0.0659	NEUTRAL	NA	2	"LARP7,ZGRF1"
TCGA.AG.A011.01A	4	113474944	118005432	120	-0.0385	NEUTRAL	NA	8	"ANK2,ARSJ,CAMK2D,LARP7,NDST4,TRAM1L1,UGT8,ZGRF1"
TCGA.CK.5914.01A	4	113502772	114163228	36	-0.0522	NEUTRAL	NA	3	"ANK2,LARP7,ZGRF1"
TCGA.AG.A008.01A	4	113505112	170400514	1718	-0.2801	NEUTRAL	NA	168	Too-Many
TCGA.AG.3909.01A	4	113507554	119689281	165	0.0072	NEUTRAL	NA	12	"ANK2,ARSJ,CAMK2D,LARP7,METTL14,NDST3,NDST4,PRSS12,SEC24D,TRAM1L1,UGT8,ZGRF1"
TCGA.AA.3982	4	113775825	113930713	50	0.0432	NEUTRAL	NA	1	ANK2
TCGA.AA.3850	4	113816349	114017351	99	-0.32895	NEUTRAL	NA	1	ANK2
TCGA.AA.3982	4	113967493	114016235	35	0.256	NEUTRAL	NA	1	ANK2
TCGA.AG.3611.01A	4	113970837	130032832	469	-0.4099	NEUTRAL	NA	49	"ADAD1,ANK2,ANKRD50,ANXA5,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf33,CAMK2D,CCNA2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NUDT6,PDE5A,PGRMC2,PLK4,PRDM5,PRSS12,QRFPR,SCLT1,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53"
TCGA.F5.6863	4	113989325	119261938	1456	-0.0034	NEUTRAL	NA	8	"ANK2,ARSJ,CAMK2D,NDST3,NDST4,PRSS12,TRAM1L1,UGT8"
TCGA.AA.3850	4	114023848	114419268	150	-0.07535	NEUTRAL	NA	2	"ANK2,CAMK2D"
TCGA.AA.3982	4	114025921	114608717	223	0.0786	NEUTRAL	NA	2	"ANK2,CAMK2D"
TCGA.AG.A00C.01A	4	114095530	115997163	86	-0.3746	NEUTRAL	NA	5	"ANK2,ARSJ,CAMK2D,NDST4,UGT8"
TCGA.AA.A010.01A	4	114239625	114267019	11	0.2327	NEUTRAL	NA	1	ANK2
TCGA.AA.A010.01A	4	114269351	114386626	17	-0.5131	NEUTRAL	NA	2	"ANK2,CAMK2D"
TCGA.AA.3989	4	114305231	177796976	17172	-0.3362	NEUTRAL	NA	186	Too-Many
TCGA.AG.A01W.01A	4	114336926	128958882	501	-0.1106	NEUTRAL	NA	43	"ADAD1,ANKRD50,ANXA5,ARSJ,BBS12,BBS7,C4orf29,C4orf3,CAMK2D,CCNA2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,KIAA1109,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NUDT6,PDE5A,PLK4,PRDM5,PRSS12,QRFPR,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53"
TCGA.CK.5914.01A	4	114421567	120169866	113	-0.0028	NEUTRAL	NA	12	"ARSJ,CAMK2D,METTL14,MYOZ2,NDST3,NDST4,PRSS12,SEC24D,SYNPO2,TRAM1L1,UGT8,USP53"
TCGA.AA.3850	4	114425697	114593465	71	-0.32445	NEUTRAL	NA	1	CAMK2D
TCGA.AZ.4684.01A	4	114473123	120423687	120	0.0292	NEUTRAL	NA	15	"ARSJ,C4orf3,CAMK2D,FABP2,METTL14,MYOZ2,NDST3,NDST4,PDE5A,PRSS12,SEC24D,SYNPO2,TRAM1L1,UGT8,USP53"
TCGA.AA.A01S	4	114543213	116457141	519	0.00285	NEUTRAL	NA	4	"ARSJ,CAMK2D,NDST4,UGT8"
TCGA.AA.3982	4	114618601	119022642	1145	-0.3612	NEUTRAL	NA	6	"ARSJ,CAMK2D,NDST3,NDST4,TRAM1L1,UGT8"
TCGA.AG.3731	4	114766991	115053884	107	0.3099	NEUTRAL	NA	1	ARSJ
TCGA.AG.3731	4	115076042	120005050	1228	-0.017	NEUTRAL	NA	8	"METTL14,NDST3,NDST4,PRSS12,SEC24D,SYNPO2,TRAM1L1,UGT8"
TCGA.DY.A1DC	4	115638208	117851509	478	0.0284	NEUTRAL	NA	1	NDST4
TCGA.A6.2675	4	115784596	131034223	3902	0.0363	NEUTRAL	NA	45	"ADAD1,ANKRD50,ANXA5,BBS12,BBS7,C4orf29,C4orf3,C4orf33,CCNA2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NUDT6,PDE5A,PGRMC2,PLK4,PRDM5,PRSS12,QRFPR,SCLT1,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TMEM155,TNIP3,TRAM1L1,TRPC3,USP53"
TCGA.DM.A1HA	4	116452053	176851044	16223	0.0399	NEUTRAL	NA	177	Too-Many
TCGA.D5.6538	4	116507163	118663019	545	-0.5025	NEUTRAL	NA	1	TRAM1L1
TCGA.AA.3697	4	116759670	118358898	369	0.3155	NEUTRAL	NA	1	TRAM1L1
TCGA.A6.2686	4	116895949	118214969	317	-0.3141	NEUTRAL	NA	1	TRAM1L1
TCGA.AA.A01S	4	116927094	117846012	218	-0.05115	NEUTRAL	NA	0	None
TCGA.DY.A1DF	4	117447193	117977598	164	-0.4454	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	117870452	125323827	1976	0.0305	NEUTRAL	NA	31	"ADAD1,ANXA5,BBS12,BBS7,C4orf3,CCNA2,EXOSC9,FABP2,FGF2,IL2,IL21,KIAA1109,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,NUDT6,PDE5A,PRDM5,PRSS12,QRFPR,SEC24D,SPATA5,SPRY1,SYNPO2,TMEM155,TNIP3,TRAM1L1,TRPC3,USP53"
TCGA.DY.A1DF	4	117992101	161391649	11458	0.002	NEUTRAL	NA	136	Too-Many
TCGA.AG.A00C.01A	4	118005432	123130286	230	-0.1048	NEUTRAL	NA	23	"ANXA5,BBS7,C4orf3,CCNA2,EXOSC9,FABP2,KIAA1109,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,PDE5A,PRDM5,PRSS12,QRFPR,SEC24D,SYNPO2,TMEM155,TNIP3,TRAM1L1,TRPC3,USP53"
TCGA.A6.2686	4	118239301	119681242	369	0.2578	NEUTRAL	NA	4	"METTL14,NDST3,PRSS12,SEC24D"
TCGA.AA.3697	4	118361706	188113027	20099	-0.2822	NEUTRAL	NA	217	Too-Many
TCGA.AG.A011.01A	4	118975018	170926694	1636	0.2851	NEUTRAL	NA	163	Too-Many
TCGA.AA.3844	4	119026857	125225083	1630	-0.2621	NEUTRAL	NA	30	"ADAD1,ANXA5,BBS12,BBS7,C4orf3,CCNA2,EXOSC9,FABP2,FGF2,IL2,IL21,KIAA1109,MAD2L1,METTL14,MYOZ2,NDNF,NDST3,NUDT6,PDE5A,PRDM5,PRSS12,QRFPR,SEC24D,SPATA5,SPRY1,SYNPO2,TMEM155,TNIP3,TRPC3,USP53"
TCGA.AA.3982	4	119026857	130505164	2974	-0.0749	NEUTRAL	NA	43	"ADAD1,ANKRD50,ANXA5,BBS12,BBS7,C4orf29,C4orf3,C4orf33,CCNA2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NUDT6,PDE5A,PGRMC2,PLK4,PRDM5,PRSS12,QRFPR,SCLT1,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TMEM155,TNIP3,TRPC3,USP53"
TCGA.AA.3941	4	119149180	120193546	271	0.0124	NEUTRAL	NA	7	"METTL14,MYOZ2,NDST3,PRSS12,SEC24D,SYNPO2,USP53"
TCGA.AA.3850	4	119149180	121270938	541	-0.31865	NEUTRAL	NA	11	"C4orf3,FABP2,MAD2L1,METTL14,MYOZ2,NDST3,PDE5A,PRSS12,SEC24D,SYNPO2,USP53"
TCGA.NH.A6GC	4	119160675	190921708	20637	-0.4585	NEUTRAL	NA	221	Too-Many
TCGA.AA.A010.01A	4	119273332	119665112	21	0.0502	NEUTRAL	NA	3	"METTL14,PRSS12,SEC24D"
TCGA.AG.3909.01A	4	119718811	120243125	37	-0.4551	NEUTRAL	NA	6	"C4orf3,FABP2,MYOZ2,SEC24D,SYNPO2,USP53"
TCGA.AG.3906.01A	4	119736156	122592651	101	-0.1408	NEUTRAL	NA	13	"ANXA5,C4orf3,FABP2,MAD2L1,MYOZ2,NDNF,PDE5A,PRDM5,QRFPR,SEC24D,SYNPO2,TNIP3,USP53"
TCGA.AG.4009.01A	4	119810151	122599522	99	-0.0684	NEUTRAL	NA	12	"ANXA5,C4orf3,FABP2,MAD2L1,MYOZ2,NDNF,PDE5A,PRDM5,QRFPR,SYNPO2,TNIP3,USP53"
TCGA.QG.A5YX	4	119956280	126546174	1787	0.0341	NEUTRAL	NA	28	"ADAD1,ANKRD50,ANXA5,BBS12,BBS7,C4orf3,CCNA2,EXOSC9,FABP2,FAT4,FGF2,IL2,IL21,KIAA1109,MAD2L1,MYOZ2,NDNF,NUDT6,PDE5A,PRDM5,QRFPR,SPATA5,SPRY1,SYNPO2,TMEM155,TNIP3,TRPC3,USP53"
TCGA.A6.2686	4	119994349	134973966	3780	0.2439	NEUTRAL	NA	39	"ADAD1,ANKRD50,ANXA5,BBS12,BBS7,C4orf29,C4orf3,C4orf33,CCNA2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,MAD2L1,MFSD8,MYOZ2,NDNF,NUDT6,PCDH10,PDE5A,PGRMC2,PLK4,PRDM5,QRFPR,SCLT1,SLC25A31,SPATA5,SPRY1,TMEM155,TNIP3,TRPC3,USP53"
TCGA.AG.3731	4	120008226	190921708	20451	0.264	NEUTRAL	NA	216	Too-Many
TCGA.AA.3941	4	120202386	122525104	709	-0.4052	NEUTRAL	NA	9	"C4orf3,FABP2,MAD2L1,NDNF,PDE5A,PRDM5,QRFPR,TNIP3,USP53"
TCGA.D5.6538	4	120381522	160028868	10431	0.0175	NEUTRAL	NA	125	Too-Many
TCGA.AG.3909.01A	4	120419724	120474746	14	0.0443	NEUTRAL	NA	1	PDE5A
TCGA.AA.A010.01A	4	120425651	120517625	16	0.3036	NEUTRAL	NA	1	PDE5A
TCGA.CK.5914.01A	4	120473665	120986786	14	-0.3691	NEUTRAL	NA	2	"MAD2L1,PDE5A"
TCGA.AG.3909.01A	4	120481386	120986786	12	-0.2595	NEUTRAL	NA	2	"MAD2L1,PDE5A"
TCGA.AA.3509.01A	4	120481386	123164957	135	0.3314	NEUTRAL	NA	13	"ANXA5,BBS7,CCNA2,EXOSC9,KIAA1109,MAD2L1,NDNF,PDE5A,PRDM5,QRFPR,TMEM155,TNIP3,TRPC3"
TCGA.AZ.4684.01A	4	120481386	123164957	135	-0.0954	NEUTRAL	NA	13	"ANXA5,BBS7,CCNA2,EXOSC9,KIAA1109,MAD2L1,NDNF,PDE5A,PRDM5,QRFPR,TMEM155,TNIP3,TRPC3"
TCGA.AA.A01S	4	120532400	122700668	712	-0.00845	NEUTRAL	NA	8	"ANXA5,MAD2L1,NDNF,PDE5A,PRDM5,QRFPR,TMEM155,TNIP3"
TCGA.F5.6863	4	120880066	190921708	20168	-0.0144	NEUTRAL	NA	211	Too-Many
TCGA.AG.3909.01A	4	120987752	121706109	7	0.1592	NEUTRAL	NA	2	"MAD2L1,PRDM5"
TCGA.AZ.4616	4	121552825	121957558	139	-0.0279	NEUTRAL	NA	2	"NDNF,PRDM5"
TCGA.AA.3850	4	121610488	124970238	900	-0.24165	NEUTRAL	NA	19	"ADAD1,ANXA5,BBS12,BBS7,CCNA2,EXOSC9,FGF2,IL2,IL21,KIAA1109,NDNF,NUDT6,PRDM5,QRFPR,SPATA5,SPRY1,TMEM155,TNIP3,TRPC3"
TCGA.AA.A010.01A	4	121616214	122071206	25	-0.3286	NEUTRAL	NA	3	"NDNF,PRDM5,TNIP3"
TCGA.DC.4749	4	121715305	190921708	19963	-0.4566	NEUTRAL	NA	210	Too-Many
TCGA.CK.5914.01A	4	121720758	122085161	23	-0.206	NEUTRAL	NA	3	"NDNF,PRDM5,TNIP3"
TCGA.AG.3909.01A	4	121957377	122604471	29	-0.0521	NEUTRAL	NA	4	"ANXA5,NDNF,QRFPR,TNIP3"
TCGA.D5.6898	4	122291130	125989450	916	0.0163	NEUTRAL	NA	17	"ADAD1,ANKRD50,ANXA5,BBS12,BBS7,CCNA2,EXOSC9,FGF2,IL2,IL21,KIAA1109,NUDT6,QRFPR,SPATA5,SPRY1,TMEM155,TRPC3"
TCGA.AA.3941	4	122533935	124875935	558	0.0158	NEUTRAL	NA	15	"ADAD1,ANXA5,BBS12,BBS7,CCNA2,EXOSC9,FGF2,IL2,IL21,KIAA1109,NUDT6,SPATA5,SPRY1,TMEM155,TRPC3"
TCGA.AG.A014.01A	4	122590707	122681412	11	0.0897	NEUTRAL	NA	2	"ANXA5,TMEM155"
TCGA.AA.A010.01A	4	122617654	122738721	15	0.2965	NEUTRAL	NA	4	"ANXA5,CCNA2,EXOSC9,TMEM155"
TCGA.AG.3906.01A	4	122681412	125631108	183	-0.1285	NEUTRAL	NA	15	"ADAD1,ANKRD50,BBS12,BBS7,CCNA2,EXOSC9,FGF2,IL2,IL21,KIAA1109,NUDT6,SPATA5,SPRY1,TMEM155,TRPC3"
TCGA.AG.A014.01A	4	122682644	122766609	27	-0.2488	NEUTRAL	NA	4	"BBS7,CCNA2,EXOSC9,TMEM155"
TCGA.AG.4009.01A	4	122722514	128951617	277	-0.0905	NEUTRAL	NA	21	"ADAD1,ANKRD50,BBS12,BBS7,C4orf29,CCNA2,EXOSC9,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,KIAA1109,MFSD8,NUDT6,PLK4,SLC25A31,SPATA5,SPRY1,TRPC3"
TCGA.AA.A010.01A	4	122747008	123141441	49	-0.0739	NEUTRAL	NA	3	"BBS7,KIAA1109,TRPC3"
TCGA.CK.5914.01A	4	122760722	123227015	81	0.005	NEUTRAL	NA	3	"BBS7,KIAA1109,TRPC3"
TCGA.AA.A00N.01A	4	122765030	123096956	28	0.2623	NEUTRAL	NA	3	"BBS7,KIAA1109,TRPC3"
TCGA.AG.3909.01A	4	122765030	123118334	34	-0.2547	NEUTRAL	NA	3	"BBS7,KIAA1109,TRPC3"
TCGA.AG.A014.01A	4	122791353	123109053	19	-0.2778	NEUTRAL	NA	3	"BBS7,KIAA1109,TRPC3"
TCGA.AG.3909.01A	4	123120462	123270615	68	0.0397	NEUTRAL	NA	1	KIAA1109
TCGA.AG.A00C.01A	4	123130932	123210190	37	-0.3932	NEUTRAL	NA	1	KIAA1109
TCGA.AG.A014.01A	4	123150244	123818729	87	-0.3523	NEUTRAL	NA	7	"ADAD1,BBS12,FGF2,IL2,IL21,KIAA1109,NUDT6"
TCGA.AA.A010.01A	4	123164102	123210190	25	0.1253	NEUTRAL	NA	1	KIAA1109
TCGA.AG.A00C.01A	4	123222437	128941183	174	-0.0978	NEUTRAL	NA	17	"ADAD1,ANKRD50,BBS12,C4orf29,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,KIAA1109,MFSD8,NUDT6,PLK4,SLC25A31,SPATA5,SPRY1"
TCGA.AA.A01S	4	123238963	129495182	1516	-0.01885	NEUTRAL	NA	19	"ADAD1,ANKRD50,BBS12,C4orf29,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,KIAA1109,LARP1B,MFSD8,NUDT6,PGRMC2,PLK4,SLC25A31,SPATA5,SPRY1"
TCGA.AA.A00N.01A	4	123245534	126315029	78	-0.0982	NEUTRAL	NA	11	"ADAD1,ANKRD50,BBS12,FAT4,FGF2,IL2,IL21,KIAA1109,NUDT6,SPATA5,SPRY1"
TCGA.AG.3909.01A	4	123271004	123283179	7	-0.2932	NEUTRAL	NA	1	KIAA1109
TCGA.CK.5914.01A	4	123276904	123314735	8	-0.4458	NEUTRAL	NA	2	"ADAD1,KIAA1109"
TCGA.AA.A017.01A	4	123280681	123350754	13	0.3297	NEUTRAL	NA	2	"ADAD1,KIAA1109"
TCGA.AA.A010.01A	4	123280681	140196396	245	0.0594	NEUTRAL	NA	29	"ADAD1,ANKRD50,BBS12,C4orf29,C4orf33,CCRN4L,ELF2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,MFSD8,MGARP,NUDT6,PABPC4L,PCDH10,PCDH18,PGRMC2,PLK4,SCLT1,SLC25A31,SLC7A11,SPATA5,SPRY1"
TCGA.AG.3909.01A	4	123314735	123813931	19	-0.0893	NEUTRAL	NA	6	"ADAD1,BBS12,FGF2,IL2,IL21,NUDT6"
TCGA.CK.5914.01A	4	123317355	123377227	10	0.2284	NEUTRAL	NA	2	"ADAD1,IL2"
TCGA.F5.6811.01A	4	123464984	123476749	8	0.209	NEUTRAL	NA	0	None
TCGA.F5.6811.01A	4	123477468	191185128	1958	-0.3424	NEUTRAL	NA	198	Too-Many
TCGA.AZ.4684.01A	4	123533842	128814428	106	-0.0189	NEUTRAL	NA	12	"ANKRD50,BBS12,FAT4,FGF2,HSPA4L,IL21,INTU,NUDT6,PLK4,SLC25A31,SPATA5,SPRY1"
TCGA.AA.A017.01A	4	123541777	184210504	1528	0.0379	NEUTRAL	NA	162	Too-Many
TCGA.CM.6163	4	123745610	150272871	6807	-0.0666	NEUTRAL	NA	64	"ABCE1,ANAPC10,ANKRD50,ARHGAP10,C4orf29,C4orf33,C4orf51,CCRN4L,CLGN,EDNRA,ELF2,ELMOD2,FAT4,FGF2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,HSPA4L,IL15,INPP4B,INTU,JADE1,LARP1B,LSM6,MAML3,MFSD8,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,NUDT6,OTUD4,PABPC4L,PCDH10,PCDH18,PGRMC2,PLK4,POU4F2,PRMT9,RAB33B,RNF150,SCLT1,SCOC,SETD7,SLC10A7,SLC25A31,SLC7A11,SMAD1,SMARCA5,SPATA5,SPRY1,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AG.A014.01A	4	123848749	125590790	18	-0.153	NEUTRAL	NA	3	"ANKRD50,SPATA5,SPRY1"
TCGA.CK.5914.01A	4	123857226	126241210	19	-0.3869	NEUTRAL	NA	4	"ANKRD50,FAT4,SPATA5,SPRY1"
TCGA.AG.3909.01A	4	123977467	124235026	5	0.0288	NEUTRAL	NA	1	SPATA5
TCGA.AZ.4616	4	124496347	125034217	154	-0.0212	NEUTRAL	NA	0	None
TCGA.EI.7004	4	125117490	190921708	19021	-0.026	NEUTRAL	NA	191	Too-Many
TCGA.DY.A1DC	4	125335803	126424440	315	0.0004	NEUTRAL	NA	2	"ANKRD50,FAT4"
TCGA.D5.6898	4	125992281	190921708	18796	-0.3168	NEUTRAL	NA	190	Too-Many
TCGA.AG.3906.01A	4	126237570	128554173	24	-0.3767	NEUTRAL	NA	2	"FAT4,INTU"
TCGA.AG.3909.01A	4	126315029	128627613	31	-0.0256	NEUTRAL	NA	2	"FAT4,INTU"
TCGA.CK.5914.01A	4	126369585	128802203	53	0.0313	NEUTRAL	NA	5	"FAT4,HSPA4L,INTU,PLK4,SLC25A31"
TCGA.AA.A00N.01A	4	126428341	128564674	3	-0.4185	NEUTRAL	NA	1	INTU
TCGA.DY.A1DC	4	126439984	130731071	1058	0.0221	NEUTRAL	NA	11	"C4orf29,C4orf33,HSPA4L,INTU,JADE1,LARP1B,MFSD8,PGRMC2,PLK4,SCLT1,SLC25A31"
TCGA.AA.3844	4	126458788	126810425	87	-0.3502	NEUTRAL	NA	0	None
TCGA.AZ.4308	4	126983062	129913344	647	0.0108	NEUTRAL	NA	10	"C4orf29,HSPA4L,INTU,JADE1,LARP1B,MFSD8,PGRMC2,PLK4,SCLT1,SLC25A31"
TCGA.AA.3867	4	126989723	127224640	58	-0.4593	NEUTRAL	NA	0	None
TCGA.QG.A5YX	4	127105856	134561908	1748	0.0554	NEUTRAL	NA	12	"C4orf29,C4orf33,HSPA4L,INTU,JADE1,LARP1B,MFSD8,PCDH10,PGRMC2,PLK4,SCLT1,SLC25A31"
TCGA.AA.3844	4	127185749	130538553	802	-0.3476	NEUTRAL	NA	11	"C4orf29,C4orf33,HSPA4L,INTU,JADE1,LARP1B,MFSD8,PGRMC2,PLK4,SCLT1,SLC25A31"
TCGA.AA.3867	4	127234102	128401322	324	-0.0672	NEUTRAL	NA	0	None
TCGA.AA.3529	4	127313505	127797324	148	-0.4385	NEUTRAL	NA	0	None
TCGA.AA.3529	4	127802420	178554467	13803	0.0168	NEUTRAL	NA	151	Too-Many
TCGA.AA.3850	4	128374279	130072579	293	0.05525	NEUTRAL	NA	11	"C4orf29,C4orf33,HSPA4L,INTU,JADE1,LARP1B,MFSD8,PGRMC2,PLK4,SCLT1,SLC25A31"
TCGA.AA.3867	4	128410915	129837160	245	0.2507	NEUTRAL	NA	10	"C4orf29,HSPA4L,INTU,JADE1,LARP1B,MFSD8,PGRMC2,PLK4,SCLT1,SLC25A31"
TCGA.AA.3941	4	128410915	130072579	289	0.1188	NEUTRAL	NA	11	"C4orf29,C4orf33,HSPA4L,INTU,JADE1,LARP1B,MFSD8,PGRMC2,PLK4,SCLT1,SLC25A31"
TCGA.AG.3906.01A	4	128564674	128854100	57	-0.0606	NEUTRAL	NA	5	"HSPA4L,INTU,MFSD8,PLK4,SLC25A31"
TCGA.AA.3930.01A	4	128564674	129778443	104	-0.5129	NEUTRAL	NA	9	"C4orf29,HSPA4L,INTU,JADE1,LARP1B,MFSD8,PGRMC2,PLK4,SLC25A31"
TCGA.AG.A014.01A	4	128605506	128819567	48	-0.2352	NEUTRAL	NA	4	"HSPA4L,INTU,PLK4,SLC25A31"
TCGA.AA.A00N.01A	4	128625343	128729114	23	-0.4633	NEUTRAL	NA	3	"HSPA4L,INTU,SLC25A31"
TCGA.A6.6781	4	128632444	190921708	16378	0.0194	NEUTRAL	NA	189	Too-Many
TCGA.AA.A02K.01A	4	128665811	128941184	57	-0.2842	NEUTRAL	NA	5	"C4orf29,HSPA4L,MFSD8,PLK4,SLC25A31"
TCGA.AG.3909.01A	4	128724777	128951617	46	-0.0737	NEUTRAL	NA	4	"C4orf29,HSPA4L,MFSD8,PLK4"
TCGA.AA.3509.01A	4	128814891	129130969	45	-0.3925	NEUTRAL	NA	4	"C4orf29,LARP1B,MFSD8,PLK4"
TCGA.CK.5914.01A	4	128841768	128956841	23	-0.1423	NEUTRAL	NA	2	"C4orf29,MFSD8"
TCGA.AG.A014.01A	4	128841768	129019294	25	0.152	NEUTRAL	NA	3	"C4orf29,LARP1B,MFSD8"
TCGA.AG.3891.01A	4	128842627	129042934	28	0.0354	NEUTRAL	NA	3	"C4orf29,LARP1B,MFSD8"
TCGA.AA.A00N.01A	4	128859868	128951617	18	-0.2834	NEUTRAL	NA	2	"C4orf29,MFSD8"
TCGA.AF.2687	4	128899032	177114888	13036	0.1816	NEUTRAL	NA	141	Too-Many
TCGA.A6.3810.01A	4	128904069	129012492	17	-0.253	NEUTRAL	NA	2	"C4orf29,LARP1B"
TCGA.CK.4948.01B	4	128949583	129028257	10	-0.3207	NEUTRAL	NA	2	"C4orf29,LARP1B"
TCGA.AA.A02K.01A	4	128949584	128998896	4	0.0822	NEUTRAL	NA	2	"C4orf29,LARP1B"
TCGA.AG.A01W.01A	4	128973247	129039018	16	0.0135	NEUTRAL	NA	1	LARP1B
TCGA.AA.A00F.01A	4	128996041	129019294	6	0.3719	NEUTRAL	NA	1	LARP1B
TCGA.AA.A02K.01A	4	129003274	141549391	175	-0.3717	NEUTRAL	NA	24	"C4orf33,CCRN4L,CLGN,ELF2,ELMOD2,JADE1,LARP1B,MAML3,MGARP,MGAT4D,MGST2,NAA15,NDUFC1,PABPC4L,PCDH10,PCDH18,PGRMC2,RAB33B,SCLT1,SCOC,SETD7,SLC7A11,TBC1D9,UCP1"
TCGA.AG.A00C.01A	4	129012492	140811421	130	-0.1619	NEUTRAL	NA	18	"C4orf33,CCRN4L,ELF2,JADE1,LARP1B,MAML3,MGARP,MGST2,NAA15,NDUFC1,PABPC4L,PCDH10,PCDH18,PGRMC2,RAB33B,SCLT1,SETD7,SLC7A11"
TCGA.AA.A00N.01A	4	129019294	129764053	18	-0.0279	NEUTRAL	NA	3	"JADE1,LARP1B,PGRMC2"
TCGA.CK.5914.01A	4	129019294	129764053	18	-0.2807	NEUTRAL	NA	3	"JADE1,LARP1B,PGRMC2"
TCGA.AZ.4684.01A	4	129019294	129857813	31	-0.4463	NEUTRAL	NA	4	"JADE1,LARP1B,PGRMC2,SCLT1"
TCGA.A6.3810.01A	4	129019294	190947494	1788	0.1057	NEUTRAL	NA	184	Too-Many
TCGA.AG.3909.01A	4	129028257	129764053	17	-0.3222	NEUTRAL	NA	3	"JADE1,LARP1B,PGRMC2"
TCGA.AA.A00F.01A	4	129028257	140810473	103	-0.3389	NEUTRAL	NA	18	"C4orf33,CCRN4L,ELF2,JADE1,LARP1B,MAML3,MGARP,MGST2,NAA15,NDUFC1,PABPC4L,PCDH10,PCDH18,PGRMC2,RAB33B,SCLT1,SETD7,SLC7A11"
TCGA.AG.4009.01A	4	129028257	153600952	574	-0.0852	NEUTRAL	NA	62	"ABCE1,ANAPC10,ARHGAP10,C4orf33,C4orf51,CCRN4L,CLGN,DCLK2,EDNRA,ELF2,ELMOD2,FAM160A1,FBXW7,FREM3,GAB1,GATB,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,JADE1,LARP1B,LRBA,LSM6,MAB21L2,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,OTUD4,PABPC4L,PCDH10,PCDH18,PGRMC2,POU4F2,PRMT9,PRSS48,RAB33B,RNF150,RPS3A,SCLT1,SCOC,SETD7,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TMEM154,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AG.3906.01A	4	129028257	170912560	1193	-0.0578	NEUTRAL	NA	125	Too-Many
TCGA.AG.A014.01A	4	129028257	190947494	1704	-0.2096	NEUTRAL	NA	184	Too-Many
TCGA.CK.4948.01B	4	129035678	129891491	37	0.0424	NEUTRAL	NA	4	"JADE1,LARP1B,PGRMC2,SCLT1"
TCGA.AG.3891.01A	4	129083320	144920507	269	-0.2341	NEUTRAL	NA	34	"C4orf33,CCRN4L,CLGN,ELF2,ELMOD2,FREM3,GAB1,GYPB,GYPE,IL15,INPP4B,JADE1,LARP1B,MAML3,MGARP,MGAT4D,MGST2,NAA15,NDUFC1,PABPC4L,PCDH10,PCDH18,PGRMC2,RAB33B,RNF150,SCLT1,SCOC,SETD7,SLC7A11,SMARCA5,TBC1D9,UCP1,USP38,ZNF330"
TCGA.A6.3808.01A	4	129127544	177060998	1312	0.2469	NEUTRAL	NA	139	Too-Many
TCGA.AA.3509.01A	4	129192419	167833724	1045	0.3035	NEUTRAL	NA	114	Too-Many
TCGA.AG.A01W.01A	4	129218346	152155013	555	-0.1855	NEUTRAL	NA	55	"ABCE1,ANAPC10,ARHGAP10,C4orf33,C4orf51,CCRN4L,CLGN,DCLK2,EDNRA,ELF2,ELMOD2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,JADE1,LRBA,LSM6,MAB21L2,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,OTUD4,PABPC4L,PCDH10,PCDH18,POU4F2,PRMT9,RAB33B,RNF150,RPS3A,SCLT1,SCOC,SETD7,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AZ.4616	4	129281865	152065683	5778	-0.3321	NEUTRAL	NA	55	"ABCE1,ANAPC10,ARHGAP10,C4orf33,C4orf51,CCRN4L,CLGN,DCLK2,EDNRA,ELF2,ELMOD2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,JADE1,LRBA,LSM6,MAB21L2,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,OTUD4,PABPC4L,PCDH10,PCDH18,POU4F2,PRMT9,RAB33B,RNF150,RPS3A,SCLT1,SCOC,SETD7,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AG.3909.01A	4	129812155	130032832	23	-0.0591	NEUTRAL	NA	2	"C4orf33,SCLT1"
TCGA.AZ.4684.01A	4	129864114	139153374	42	0.0466	NEUTRAL	NA	6	"C4orf33,PABPC4L,PCDH10,PCDH18,SCLT1,SLC7A11"
TCGA.AA.3867	4	129873432	130587230	233	0.0237	NEUTRAL	NA	2	"C4orf33,SCLT1"
TCGA.CK.5914.01A	4	129873869	129965076	12	0.0938	NEUTRAL	NA	1	SCLT1
TCGA.CK.4948.01B	4	129960125	165118111	954	0.0165	NEUTRAL	NA	101	Too-Many
TCGA.AA.A00A.01A	4	129964495	190884165	1370	-0.4744	NEUTRAL	NA	180	Too-Many
TCGA.DM.A1HB	4	130167641	131727376	480	-0.0616	NEUTRAL	NA	0	None
TCGA.AZ.4308	4	130236238	134869723	1138	-0.0319	NEUTRAL	NA	1	PCDH10
TCGA.AA.3982	4	130518405	130758444	76	-0.3833	NEUTRAL	NA	0	None
TCGA.AA.3867	4	130588288	130952980	98	-0.2432	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	130760317	137886833	1598	0.0095	NEUTRAL	NA	2	"PABPC4L,PCDH10"
TCGA.AA.3982	4	130766890	138233577	1721	-0.3952	NEUTRAL	NA	2	"PABPC4L,PCDH10"
TCGA.AA.3867	4	130960669	131054230	34	0.2342	NEUTRAL	NA	0	None
TCGA.AA.A01S	4	131013065	132350323	328	-0.06375	NEUTRAL	NA	0	None
TCGA.A6.2675	4	131034259	165361555	9097	-0.2514	NEUTRAL	NA	100	"ABCE1,ANAPC10,ANP32C,ARFIP1,ARHGAP10,ASIC5,C4orf45,C4orf46,C4orf51,CCRN4L,CLGN,CTSO,DCHS2,DCLK2,EDNRA,ELF2,ELMOD2,ETFDH,FAM160A1,FAM198B,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FREM3,FSTL5,GAB1,GATB,GLRB,GRIA2,GUCY1A3,GUCY1B3,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,KIAA0922,LRAT,LRBA,LSM6,MAB21L2,MAML3,MAP9,MARCH1,MGARP,MGAT4D,MGST2,MMAA,MND1,NAA15,NAF1,NDUFC1,NPY1R,NPY2R,NPY5R,NR3C2,OTUD4,PABPC4L,PCDH10,PCDH18,PDGFC,PLRG1,POU4F2,PPID,PRMT9,PRSS48,RAB33B,RAPGEF2,RBM46,RNF150,RNF175,RPS3A,RXFP1,SCOC,SETD7,SFRP2,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TDO2,TIGD4,TKTL2,TLR2,TMA16,TMEM144,TMEM154,TMEM184C,TRIM2,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AA.3867	4	131061952	134714206	832	-0.2568	NEUTRAL	NA	1	PCDH10
TCGA.DM.A1D4	4	131252024	190921708	17501	-0.0027	NEUTRAL	NA	178	Too-Many
TCGA.DM.A1HB	4	131792420	135089225	674	-0.1107	NEUTRAL	NA	1	PCDH10
TCGA.F5.6813	4	132764601	190921708	17133	-0.0197	NEUTRAL	NA	178	Too-Many
TCGA.AA.A01S	4	133293684	133757820	131	0.00555	NEUTRAL	NA	0	None
TCGA.D5.6932	4	133569452	190921708	16967	0.0279	NEUTRAL	NA	178	Too-Many
TCGA.AA.3679	4	133687354	134093149	116	-0.0247	NEUTRAL	NA	1	PCDH10
TCGA.AG.3909.01A	4	134111206	139965795	21	-0.0347	NEUTRAL	NA	5	"CCRN4L,PABPC4L,PCDH10,PCDH18,SLC7A11"
TCGA.AA.3867	4	134726157	138278477	819	-0.2348	NEUTRAL	NA	1	PABPC4L
TCGA.A6.2686	4	134984165	135775237	154	0.255	NEUTRAL	NA	1	PABPC4L
TCGA.F4.6808	4	135006266	135411824	79	0.206	NEUTRAL	NA	1	PABPC4L
TCGA.AG.3611.01A	4	135121410	152624929	426	-0.3793	NEUTRAL	NA	54	"ABCE1,ANAPC10,ARHGAP10,C4orf51,CCRN4L,CLGN,DCLK2,EDNRA,ELF2,ELMOD2,FAM160A1,FREM3,GAB1,GATB,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LRBA,LSM6,MAB21L2,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,OTUD4,PABPC4L,PCDH18,POU4F2,PRMT9,PRSS48,RAB33B,RNF150,RPS3A,SCOC,SETD7,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.EI.6506	4	135137470	190921708	16592	0.0025	NEUTRAL	NA	176	Too-Many
TCGA.DM.A1HB	4	135138219	135305569	29	-0.0784	NEUTRAL	NA	0	None
TCGA.DM.A1HB	4	135316743	135901431	122	-0.0802	NEUTRAL	NA	0	None
TCGA.F4.6808	4	135659378	137203213	310	0.0263	NEUTRAL	NA	0	None
TCGA.AA.3495	4	135738791	137480492	369	-0.4941	NEUTRAL	NA	0	None
TCGA.A6.2686	4	135786752	190921708	16472	0.0022	NEUTRAL	NA	176	Too-Many
TCGA.G4.6295	4	135809614	143899410	2352	-0.3719	NEUTRAL	NA	21	"CCRN4L,CLGN,ELF2,ELMOD2,IL15,INPP4B,MAML3,MGARP,MGAT4D,MGST2,NAA15,NDUFC1,PCDH18,RAB33B,RNF150,SCOC,SETD7,SLC7A11,TBC1D9,UCP1,ZNF330"
TCGA.DM.A1HB	4	135923702	149734214	3704	-0.0184	NEUTRAL	NA	45	"ABCE1,ANAPC10,ARHGAP10,C4orf51,CCRN4L,CLGN,EDNRA,ELF2,ELMOD2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LSM6,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,OTUD4,PCDH18,POU4F2,PRMT9,RAB33B,RNF150,SCOC,SETD7,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.QG.A5YX	4	136381429	190921708	16237	0.0206	NEUTRAL	NA	176	Too-Many
TCGA.AA.3495	4	137486460	137959198	163	-0.0294	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	137943050	139265551	386	0.044	NEUTRAL	NA	2	"PCDH18,SLC7A11"
TCGA.AA.A01Z	4	138204736	154125997	4194	0.0224	NEUTRAL	NA	59	"ABCE1,ANAPC10,ARFIP1,ARHGAP10,C4orf51,CCRN4L,CLGN,DCLK2,EDNRA,ELF2,ELMOD2,FAM160A1,FBXW7,FHDC1,FREM3,GAB1,GATB,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LRBA,LSM6,MAB21L2,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,OTUD4,PCDH18,POU4F2,PRMT9,PRSS48,RAB33B,RNF150,RPS3A,SCOC,SETD7,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TIGD4,TMEM154,TMEM184C,TRIM2,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AZ.4308	4	138217846	138977979	227	0.0229	NEUTRAL	NA	1	PCDH18
TCGA.AA.3941	4	138235155	139575493	440	-0.2493	NEUTRAL	NA	2	"PCDH18,SLC7A11"
TCGA.AA.3982	4	138235155	139655758	476	-0.0392	NEUTRAL	NA	2	"PCDH18,SLC7A11"
TCGA.AA.3844	4	138272926	169166735	8582	-0.2916	NEUTRAL	NA	110	Too-Many
TCGA.AA.3867	4	138283844	159377473	5821	0.1157	NEUTRAL	NA	83	"ABCE1,ANAPC10,ARFIP1,ARHGAP10,ASIC5,C4orf51,CCRN4L,CLGN,CTSO,DCHS2,DCLK2,EDNRA,ELF2,ELMOD2,FAM160A1,FAM198B,FBXW7,FGA,FGB,FGG,FHDC1,FREM3,GAB1,GATB,GLRB,GRIA2,GUCY1A3,GUCY1B3,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,KIAA0922,LRAT,LRBA,LSM6,MAB21L2,MAML3,MAP9,MGARP,MGAT4D,MGST2,MMAA,MND1,NAA15,NDUFC1,NPY2R,NR3C2,OTUD4,PCDH18,PDGFC,PLRG1,POU4F2,PRMT9,PRSS48,RAB33B,RBM46,RNF150,RNF175,RPS3A,SCOC,SETD7,SFRP2,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TDO2,TIGD4,TLR2,TMEM144,TMEM154,TMEM184C,TRIM2,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.CK.5914.01A	4	138442133	139992983	23	0.3685	NEUTRAL	NA	4	"CCRN4L,ELF2,PCDH18,SLC7A11"
TCGA.F4.6808	4	138542281	146631406	2215	0.0543	NEUTRAL	NA	34	"ABCE1,ANAPC10,C4orf51,CCRN4L,CLGN,ELF2,ELMOD2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,OTUD4,RAB33B,RNF150,SCOC,SETD7,SLC7A11,SMAD1,SMARCA5,TBC1D9,UCP1,USP38,ZNF330"
TCGA.CL.4957	4	138874840	157521068	5192	0.024	NEUTRAL	NA	77	"ABCE1,ANAPC10,ARFIP1,ARHGAP10,ASIC5,C4orf51,CCRN4L,CLGN,CTSO,DCHS2,DCLK2,EDNRA,ELF2,ELMOD2,FAM160A1,FBXW7,FGA,FGB,FGG,FHDC1,FREM3,GAB1,GATB,GUCY1A3,GUCY1B3,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,KIAA0922,LRAT,LRBA,LSM6,MAB21L2,MAML3,MAP9,MGARP,MGAT4D,MGST2,MMAA,MND1,NAA15,NDUFC1,NPY2R,NR3C2,OTUD4,PLRG1,POU4F2,PRMT9,PRSS48,RAB33B,RBM46,RNF150,RNF175,RPS3A,SCOC,SETD7,SFRP2,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TDO2,TIGD4,TLR2,TMEM154,TMEM184C,TRIM2,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AA.3850	4	138897629	139655758	292	-0.36875	NEUTRAL	NA	1	SLC7A11
TCGA.AG.A00Y.01A	4	139093045	154255927	545	-0.1689	NEUTRAL	NA	58	"ABCE1,ANAPC10,ARFIP1,ARHGAP10,C4orf51,CCRN4L,CLGN,DCLK2,EDNRA,ELF2,ELMOD2,FAM160A1,FBXW7,FHDC1,FREM3,GAB1,GATB,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LRBA,LSM6,MAB21L2,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,OTUD4,POU4F2,PRMT9,PRSS48,RAB33B,RNF150,RPS3A,SCOC,SETD7,SH3D19,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TIGD4,TMEM154,TMEM184C,TRIM2,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.DY.A1DC	4	139302834	161205869	5967	0.0243	NEUTRAL	NA	88	"ABCE1,ANAPC10,ARFIP1,ARHGAP10,ASIC5,C4orf45,C4orf46,C4orf51,CCRN4L,CLGN,CTSO,DCHS2,DCLK2,EDNRA,ELF2,ELMOD2,ETFDH,FAM160A1,FAM198B,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FREM3,GAB1,GATB,GLRB,GRIA2,GUCY1A3,GUCY1B3,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,KIAA0922,LRAT,LRBA,LSM6,MAB21L2,MAML3,MAP9,MGARP,MGAT4D,MGST2,MMAA,MND1,NAA15,NDUFC1,NPY2R,NR3C2,OTUD4,PDGFC,PLRG1,POU4F2,PPID,PRMT9,PRSS48,RAB33B,RAPGEF2,RBM46,RNF150,RNF175,RPS3A,RXFP1,SCOC,SETD7,SFRP2,SH3D19,SLC10A7,SMAD1,SMARCA5,TBC1D9,TDO2,TIGD4,TLR2,TMEM144,TMEM154,TMEM184C,TRIM2,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AA.3941	4	139580133	139847315	92	0.097	NEUTRAL	NA	0	None
TCGA.AG.3882	4	139580676	139611744	20	-0.5119	NEUTRAL	NA	0	None
TCGA.AG.3882	4	139619388	190921708	15454	0.0119	NEUTRAL	NA	174	Too-Many
TCGA.AA.3850	4	139673706	141289855	463	0.23745	NEUTRAL	NA	10	"CCRN4L,ELF2,MAML3,MGARP,MGST2,NAA15,NDUFC1,RAB33B,SCOC,SETD7"
TCGA.AA.3982	4	139673706	141350255	478	0.3606	NEUTRAL	NA	11	"CCRN4L,CLGN,ELF2,MAML3,MGARP,MGST2,NAA15,NDUFC1,RAB33B,SCOC,SETD7"
TCGA.AG.3909.01A	4	139980108	140282891	28	-0.4931	NEUTRAL	NA	4	"ELF2,MGARP,NAA15,NDUFC1"
TCGA.AA.3511	4	139981026	143612740	1119	0.0202	NEUTRAL	NA	18	"CLGN,ELF2,ELMOD2,IL15,INPP4B,MAML3,MGARP,MGAT4D,MGST2,NAA15,NDUFC1,RAB33B,RNF150,SCOC,SETD7,TBC1D9,UCP1,ZNF330"
TCGA.AA.A01S	4	140015517	140247314	28	0.10415	NEUTRAL	NA	4	"ELF2,MGARP,NAA15,NDUFC1"
TCGA.AA.A00N.01A	4	140216823	141294644	44	0.3225	NEUTRAL	NA	7	"MAML3,MGST2,NAA15,NDUFC1,RAB33B,SCOC,SETD7"
TCGA.AA.A010.01A	4	140255319	144447432	162	0.2076	NEUTRAL	NA	18	"CLGN,ELMOD2,GAB1,IL15,INPP4B,MAML3,MGAT4D,MGST2,NAA15,RAB33B,RNF150,SCOC,SETD7,SMARCA5,TBC1D9,UCP1,USP38,ZNF330"
TCGA.AG.3909.01A	4	140291317	141264736	27	0.0822	NEUTRAL	NA	6	"MAML3,MGST2,NAA15,RAB33B,SCOC,SETD7"
TCGA.CK.5914.01A	4	140299858	141319963	37	0.0711	NEUTRAL	NA	7	"CLGN,MAML3,MGST2,NAA15,RAB33B,SCOC,SETD7"
TCGA.AA.3495	4	140308983	152549306	3119	-0.0098	NEUTRAL	NA	46	"ABCE1,ANAPC10,ARHGAP10,C4orf51,CLGN,DCLK2,EDNRA,ELMOD2,FAM160A1,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LRBA,LSM6,MAB21L2,MAML3,MGAT4D,MGST2,MMAA,NAA15,NR3C2,OTUD4,POU4F2,PRMT9,PRSS48,RAB33B,RNF150,RPS3A,SCOC,SETD7,SH3D19,SLC10A7,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AZ.4308	4	140319492	149403564	2508	0.0082	NEUTRAL	NA	38	"ABCE1,ANAPC10,ARHGAP10,C4orf51,CLGN,EDNRA,ELMOD2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LSM6,MAML3,MGAT4D,MGST2,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,RAB33B,RNF150,SCOC,SETD7,SLC10A7,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.DM.A28A	4	140323729	168616719	7877	-0.252	NEUTRAL	NA	101	Too-Many
TCGA.AA.3952	4	140470211	141740699	452	0.0443	NEUTRAL	NA	9	"CLGN,ELMOD2,MAML3,MGAT4D,MGST2,SCOC,SETD7,TBC1D9,UCP1"
TCGA.AU.3779	4	140495050	152140883	3022	0.1569	NEUTRAL	NA	41	"ABCE1,ANAPC10,ARHGAP10,C4orf51,CLGN,DCLK2,EDNRA,ELMOD2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LRBA,LSM6,MAB21L2,MAML3,MGAT4D,MGST2,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,RNF150,RPS3A,SCOC,SH3D19,SLC10A7,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AA.3941	4	140682886	141872791	413	0.1233	NEUTRAL	NA	8	"CLGN,ELMOD2,MAML3,MGAT4D,RNF150,SCOC,TBC1D9,UCP1"
TCGA.AA.A00F.01A	4	140811421	141590049	33	-0.0292	NEUTRAL	NA	7	"CLGN,ELMOD2,MAML3,MGAT4D,SCOC,TBC1D9,UCP1"
TCGA.AG.A00C.01A	4	141074007	141578654	40	0.1633	NEUTRAL	NA	7	"CLGN,ELMOD2,MAML3,MGAT4D,SCOC,TBC1D9,UCP1"
TCGA.AA.A00N.01A	4	141311732	141334048	12	-0.2304	NEUTRAL	NA	1	CLGN
TCGA.AA.3982	4	141378530	141872791	180	0.2547	NEUTRAL	NA	5	"ELMOD2,MGAT4D,RNF150,TBC1D9,UCP1"
TCGA.CK.5914.01A	4	141456850	141543332	12	-0.1615	NEUTRAL	NA	3	"ELMOD2,TBC1D9,UCP1"
TCGA.AZ.4684.01A	4	141471333	141868750	30	-0.2856	NEUTRAL	NA	4	"ELMOD2,RNF150,TBC1D9,UCP1"
TCGA.AA.3850	4	141488731	141852021	147	0.07305	NEUTRAL	NA	3	"RNF150,TBC1D9,UCP1"
TCGA.AA.A02K.01A	4	141555081	141580691	6	0.0054	NEUTRAL	NA	1	TBC1D9
TCGA.AG.3909.01A	4	141578224	141583020	4	-0.236	NEUTRAL	NA	1	TBC1D9
TCGA.AG.A00C.01A	4	141580690	144390162	75	-0.1829	NEUTRAL	NA	7	"GAB1,IL15,INPP4B,RNF150,TBC1D9,USP38,ZNF330"
TCGA.AA.A02K.01A	4	141583031	148594743	267	-0.4424	NEUTRAL	NA	27	"ABCE1,ANAPC10,C4orf51,EDNRA,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LSM6,MMAA,OTUD4,POU4F2,PRMT9,RNF150,SLC10A7,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,USP38,ZNF330,ZNF827"
TCGA.AG.3909.01A	4	141590049	141888740	15	0.2573	NEUTRAL	NA	2	"RNF150,TBC1D9"
TCGA.CK.5914.01A	4	141590049	146563467	169	0.1321	NEUTRAL	NA	18	"ABCE1,ANAPC10,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,MMAA,OTUD4,RNF150,SMAD1,SMARCA5,TBC1D9,USP38,ZNF330"
TCGA.A6.6780	4	141763174	149461968	2030	0.0001	NEUTRAL	NA	28	"ABCE1,ANAPC10,ARHGAP10,C4orf51,EDNRA,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LSM6,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,RNF150,SLC10A7,SMAD1,SMARCA5,TMEM184C,TTC29,USP38,ZNF330,ZNF827"
TCGA.AA.A00F.01A	4	141789368	142053489	7	-0.4907	NEUTRAL	NA	1	RNF150
TCGA.AA.3850	4	141852681	143081070	395	-0.44485	NEUTRAL	NA	4	"IL15,INPP4B,RNF150,ZNF330"
TCGA.AZ.4684.01A	4	141870414	144474218	83	0.1647	NEUTRAL	NA	7	"GAB1,IL15,INPP4B,RNF150,SMARCA5,USP38,ZNF330"
TCGA.AA.3982	4	141876268	141941521	28	-0.3856	NEUTRAL	NA	1	RNF150
TCGA.AA.3941	4	141876268	150085337	2159	-0.2232	NEUTRAL	NA	28	"ABCE1,ANAPC10,ARHGAP10,C4orf51,EDNRA,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LSM6,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,RNF150,SLC10A7,SMAD1,SMARCA5,TMEM184C,TTC29,USP38,ZNF330,ZNF827"
TCGA.AA.3982	4	141945024	149925364	2092	0.0508	NEUTRAL	NA	28	"ABCE1,ANAPC10,ARHGAP10,C4orf51,EDNRA,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LSM6,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,RNF150,SLC10A7,SMAD1,SMARCA5,TMEM184C,TTC29,USP38,ZNF330,ZNF827"
TCGA.CK.4951	4	142048546	190921708	14629	0.0033	NEUTRAL	NA	159	Too-Many
TCGA.AA.A00F.01A	4	142143474	142154830	8	0.0602	NEUTRAL	NA	1	ZNF330
TCGA.AA.A00F.01A	4	142640522	143352291	29	-0.4639	NEUTRAL	NA	2	"IL15,INPP4B"
TCGA.AG.3909.01A	4	142640522	143352291	29	0.0322	NEUTRAL	NA	2	"IL15,INPP4B"
TCGA.AG.3896	4	142727231	190921708	14481	0.3406	NEUTRAL	NA	156	Too-Many
TCGA.AA.3850	4	143095270	149733615	1673	-0.29085	NEUTRAL	NA	25	"ABCE1,ANAPC10,ARHGAP10,C4orf51,EDNRA,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,INPP4B,LSM6,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,SLC10A7,SMAD1,SMARCA5,TMEM184C,TTC29,USP38,ZNF827"
TCGA.AA.3511	4	143614261	150496027	1680	-0.5128	NEUTRAL	NA	25	"ABCE1,ANAPC10,ARHGAP10,C4orf51,EDNRA,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,INPP4B,LSM6,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,SLC10A7,SMAD1,SMARCA5,TMEM184C,TTC29,USP38,ZNF827"
TCGA.D5.6535	4	143735269	190921708	14183	-0.0376	NEUTRAL	NA	156	Too-Many
TCGA.G4.6295	4	143899482	143985782	18	0.1091	NEUTRAL	NA	0	None
TCGA.G4.6295	4	144009143	153330300	2200	-0.3998	NEUTRAL	NA	33	"ABCE1,ANAPC10,ARHGAP10,C4orf51,DCLK2,EDNRA,FAM160A1,FBXW7,FREM3,GAB1,GATB,GYPA,GYPB,GYPE,HHIP,LRBA,LSM6,MAB21L2,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,PRSS48,RPS3A,SH3D19,SLC10A7,SMAD1,SMARCA5,TMEM184C,TTC29,USP38,ZNF827"
TCGA.AA.A00F.01A	4	144106602	144127139	6	-0.0716	NEUTRAL	NA	1	USP38
TCGA.AG.3909.01A	4	144118929	144390162	18	-0.0399	NEUTRAL	NA	2	"GAB1,USP38"
TCGA.AA.A00F.01A	4	144130667	144390162	16	-0.3852	NEUTRAL	NA	2	"GAB1,USP38"
TCGA.AG.A00C.01A	4	144438444	144474218	22	0.2782	NEUTRAL	NA	1	SMARCA5
TCGA.AA.A00F.01A	4	144438444	144920507	26	-0.0592	NEUTRAL	NA	4	"FREM3,GYPB,GYPE,SMARCA5"
TCGA.AA.3952	4	144539137	157980871	3601	0.0453	NEUTRAL	NA	55	"ABCE1,ANAPC10,ARFIP1,ARHGAP10,ASIC5,C4orf51,CTSO,DCHS2,DCLK2,EDNRA,FAM160A1,FBXW7,FGA,FGB,FGG,FHDC1,FREM3,GATB,GUCY1A3,GUCY1B3,GYPA,GYPB,GYPE,HHIP,KIAA0922,LRAT,LRBA,LSM6,MAB21L2,MAP9,MMAA,MND1,NPY2R,NR3C2,OTUD4,PDGFC,PLRG1,POU4F2,PRMT9,PRSS48,RBM46,RNF175,RPS3A,SFRP2,SH3D19,SLC10A7,SMAD1,TDO2,TIGD4,TLR2,TMEM154,TMEM184C,TRIM2,TTC29,ZNF827"
TCGA.AG.A00C.01A	4	144797856	146076509	57	-0.1926	NEUTRAL	NA	7	"ABCE1,ANAPC10,GYPA,GYPB,GYPE,HHIP,OTUD4"
TCGA.AG.3909.01A	4	144797856	146601337	77	-0.1111	NEUTRAL	NA	9	"ABCE1,ANAPC10,GYPA,GYPB,GYPE,HHIP,MMAA,OTUD4,SMAD1"
TCGA.AZ.4684.01A	4	144797856	151356692	207	-0.3306	NEUTRAL	NA	22	"ABCE1,ANAPC10,ARHGAP10,C4orf51,DCLK2,EDNRA,GYPA,GYPB,GYPE,HHIP,LRBA,LSM6,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,SLC10A7,SMAD1,TMEM184C,TTC29,ZNF827"
TCGA.AG.3891.01A	4	144922321	145041626	8	0.1796	NEUTRAL	NA	2	"GYPA,GYPB"
TCGA.AA.A00F.01A	4	145032455	153600952	278	-0.3316	NEUTRAL	NA	28	"ABCE1,ANAPC10,ARHGAP10,C4orf51,DCLK2,EDNRA,FAM160A1,FBXW7,GATB,GYPA,HHIP,LRBA,LSM6,MAB21L2,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,PRSS48,RPS3A,SH3D19,SLC10A7,SMAD1,TMEM154,TMEM184C,TTC29,ZNF827"
TCGA.AA.3861.01A	4	145032455	190862099	1481	0.0514	NEUTRAL	NA	149	Too-Many
TCGA.AG.3891.01A	4	145061692	152020736	242	-0.1812	NEUTRAL	NA	22	"ABCE1,ANAPC10,ARHGAP10,C4orf51,DCLK2,EDNRA,GYPA,HHIP,LRBA,LSM6,MAB21L2,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,RPS3A,SLC10A7,SMAD1,TMEM184C,TTC29,ZNF827"
TCGA.CM.6675	4	145200951	150524834	1353	-0.1161	NEUTRAL	NA	17	"ABCE1,ANAPC10,ARHGAP10,C4orf51,EDNRA,HHIP,LSM6,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,SLC10A7,SMAD1,TMEM184C,TTC29,ZNF827"
TCGA.AA.A010.01A	4	145627635	146067372	35	0.0114	NEUTRAL	NA	4	"ABCE1,ANAPC10,HHIP,OTUD4"
TCGA.DC.6155	4	146027433	151432766	1391	-0.311	NEUTRAL	NA	17	"ABCE1,ARHGAP10,C4orf51,DCLK2,EDNRA,LRBA,LSM6,MMAA,NR3C2,OTUD4,POU4F2,PRMT9,SLC10A7,SMAD1,TMEM184C,TTC29,ZNF827"
TCGA.AG.A00C.01A	4	146077017	146095735	7	0.3361	NEUTRAL	NA	1	OTUD4
TCGA.AG.A00C.01A	4	146435714	146575109	11	-0.1082	NEUTRAL	NA	2	"MMAA,SMAD1"
TCGA.AA.A010.01A	4	146467813	156137762	424	0.1307	NEUTRAL	NA	40	"ARFIP1,ARHGAP10,C4orf51,DCHS2,DCLK2,EDNRA,FAM160A1,FBXW7,FGA,FGB,FGG,FHDC1,GATB,KIAA0922,LRAT,LRBA,LSM6,MAB21L2,MMAA,MND1,NPY2R,NR3C2,PLRG1,POU4F2,PRMT9,PRSS48,RBM46,RNF175,RPS3A,SFRP2,SH3D19,SLC10A7,SMAD1,TIGD4,TLR2,TMEM154,TMEM184C,TRIM2,TTC29,ZNF827"
TCGA.AG.A00C.01A	4	146576252	146653554	7	0.3485	NEUTRAL	NA	2	"C4orf51,MMAA"
TCGA.AA.3814	4	146639773	190921708	13615	-0.0252	NEUTRAL	NA	142	Too-Many
TCGA.AG.3909.01A	4	146686089	153600952	233	-0.0585	NEUTRAL	NA	20	"ARHGAP10,DCLK2,EDNRA,FAM160A1,FBXW7,GATB,LRBA,LSM6,MAB21L2,NR3C2,POU4F2,PRMT9,PRSS48,RPS3A,SH3D19,SLC10A7,TMEM154,TMEM184C,TTC29,ZNF827"
TCGA.AG.A00C.01A	4	146686089	153600952	231	-0.1529	NEUTRAL	NA	20	"ARHGAP10,DCLK2,EDNRA,FAM160A1,FBXW7,GATB,LRBA,LSM6,MAB21L2,NR3C2,POU4F2,PRMT9,PRSS48,RPS3A,SH3D19,SLC10A7,TMEM154,TMEM184C,TTC29,ZNF827"
TCGA.AA.A02H.01A	4	146686089	169013779	676	-0.1953	NEUTRAL	NA	74	"ANP32C,ANXA10,APELA,ARFIP1,ARHGAP10,ASIC5,C4orf45,C4orf46,CPE,CTSO,DCHS2,DCLK2,EDNRA,ETFDH,FAM160A1,FAM198B,FAM218A,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FSTL5,GATB,GLRB,GRIA2,GUCY1A3,GUCY1B3,KIAA0922,KLHL2,LRAT,LRBA,LSM6,MAB21L2,MAP9,MARCH1,MND1,MSMO1,NAF1,NPY1R,NPY2R,NPY5R,NR3C2,PDGFC,PLRG1,POU4F2,PPID,PRMT9,PRSS48,RAPGEF2,RBM46,RNF175,RPS3A,RXFP1,SFRP2,SH3D19,SLC10A7,SPOCK3,TDO2,TIGD4,TKTL2,TLL1,TLR2,TMA16,TMEM144,TMEM154,TMEM184C,TMEM192,TRIM2,TRIM60,TRIM61,TTC29,ZNF827"
TCGA.CK.5914.01A	4	146686650	151186842	116	-0.0129	NEUTRAL	NA	12	"ARHGAP10,DCLK2,EDNRA,LRBA,LSM6,NR3C2,POU4F2,PRMT9,SLC10A7,TMEM184C,TTC29,ZNF827"
TCGA.D5.6531	4	146892204	190921708	13533	-0.1872	NEUTRAL	NA	140	Too-Many
TCGA.AY.A8YK	4	146949722	190921708	13529	-0.114	NEUTRAL	NA	140	Too-Many
TCGA.AA.A01S	4	147963560	150338065	696	0.00785	NEUTRAL	NA	5	"ARHGAP10,EDNRA,NR3C2,PRMT9,TMEM184C"
TCGA.AA.A02K.01A	4	148743840	189025940	1333	-0.3831	NEUTRAL	NA	131	Too-Many
TCGA.G4.6626	4	149103453	179769612	8809	0.2686	NEUTRAL	NA	94	"AADAT,ADAM29,AGA,ANP32C,ANXA10,APELA,ARFIP1,ASB5,ASIC5,C4orf27,C4orf45,C4orf46,CBR4,CEP44,CLCN3,CPE,CTSO,DCHS2,DCLK2,DDX60,DDX60L,ETFDH,FAM160A1,FAM198B,FAM218A,FBXO8,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FSTL5,GALNT7,GALNTL6,GATB,GLRA3,GLRB,GPM6A,GRIA2,GUCY1A3,GUCY1B3,HAND2,HMGB2,HPGD,KIAA0922,KLHL2,LRAT,LRBA,MAB21L2,MAP9,MARCH1,MFAP3L,MND1,MSMO1,NAF1,NEIL3,NEK1,NPY1R,NPY2R,NPY5R,NR3C2,PALLD,PDGFC,PLRG1,PPID,PRSS48,RAPGEF2,RBM46,RNF175,RPS3A,RXFP1,SAP30,SCRG1,SFRP2,SH3D19,SH3RF1,SPATA4,SPCS3,SPOCK3,TDO2,TIGD4,TKTL2,TLL1,TLR2,TMA16,TMEM144,TMEM154,TMEM192,TRIM2,TRIM60,TRIM61,VEGFC,WDR17"
TCGA.A6.6780	4	149703850	190921708	12681	-0.0167	NEUTRAL	NA	131	Too-Many
TCGA.DM.A1HB	4	149734384	149762174	6	-0.3543	NEUTRAL	NA	0	None
TCGA.AG.3727	4	149763165	150918797	239	-0.0741	NEUTRAL	NA	0	None
TCGA.DM.A1HB	4	149780954	153167948	722	-0.018	NEUTRAL	NA	8	"DCLK2,FAM160A1,GATB,LRBA,MAB21L2,PRSS48,RPS3A,SH3D19"
TCGA.AA.3982	4	149928068	150941036	204	-0.4217	NEUTRAL	NA	0	None
TCGA.AZ.4308	4	150195962	152671639	438	0.0463	NEUTRAL	NA	8	"DCLK2,FAM160A1,GATB,LRBA,MAB21L2,PRSS48,RPS3A,SH3D19"
TCGA.CM.6163	4	150283931	168211118	5016	-0.3601	NEUTRAL	NA	63	"ANP32C,APELA,ARFIP1,ASIC5,C4orf45,C4orf46,CPE,CTSO,DCHS2,DCLK2,ETFDH,FAM160A1,FAM198B,FAM218A,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FSTL5,GATB,GLRB,GRIA2,GUCY1A3,GUCY1B3,KIAA0922,KLHL2,LRAT,LRBA,MAB21L2,MAP9,MARCH1,MND1,MSMO1,NAF1,NPY1R,NPY2R,NPY5R,PDGFC,PLRG1,PPID,PRSS48,RAPGEF2,RBM46,RNF175,RPS3A,RXFP1,SFRP2,SH3D19,SPOCK3,TDO2,TIGD4,TKTL2,TLL1,TLR2,TMA16,TMEM144,TMEM154,TMEM192,TRIM2,TRIM60,TRIM61"
TCGA.AA.3511	4	150517067	152479764	336	0.0189	NEUTRAL	NA	7	"DCLK2,FAM160A1,LRBA,MAB21L2,PRSS48,RPS3A,SH3D19"
TCGA.A6.2681	4	150724257	190921708	12482	-0.477	NEUTRAL	NA	131	Too-Many
TCGA.AA.3850	4	150832950	150959310	52	-0.15365	NEUTRAL	NA	0	None
TCGA.AG.3727	4	150919231	151074870	46	0.2825	NEUTRAL	NA	1	DCLK2
TCGA.AA.3941	4	150933553	154737162	943	0.2968	NEUTRAL	NA	19	"ARFIP1,DCLK2,FAM160A1,FBXW7,FHDC1,GATB,KIAA0922,LRBA,MAB21L2,MND1,PRSS48,RNF175,RPS3A,SFRP2,SH3D19,TIGD4,TLR2,TMEM154,TRIM2"
TCGA.AA.3982	4	150941199	153229867	502	0.3289	NEUTRAL	NA	8	"DCLK2,FAM160A1,GATB,LRBA,MAB21L2,PRSS48,RPS3A,SH3D19"
TCGA.AA.3850	4	150992929	151210676	59	0.22605	NEUTRAL	NA	2	"DCLK2,LRBA"
TCGA.AG.3727	4	151076523	190921708	12410	-0.0261	NEUTRAL	NA	131	Too-Many
TCGA.CA.6718	4	151113911	190921708	12354	-0.3772	NEUTRAL	NA	131	Too-Many
TCGA.AA.3930.01A	4	151145585	151177155	9	0.0684	NEUTRAL	NA	1	DCLK2
TCGA.AA.3850	4	151214004	151509838	41	-0.39025	NEUTRAL	NA	2	"LRBA,MAB21L2"
TCGA.DC.6155	4	151439207	152913421	304	0.0777	NEUTRAL	NA	7	"FAM160A1,GATB,LRBA,MAB21L2,PRSS48,RPS3A,SH3D19"
TCGA.AA.3850	4	151529469	154686701	801	0.22025	NEUTRAL	NA	16	"ARFIP1,FAM160A1,FBXW7,FHDC1,GATB,KIAA0922,LRBA,MND1,PRSS48,RNF175,RPS3A,SH3D19,TIGD4,TLR2,TMEM154,TRIM2"
TCGA.AZ.4684.01A	4	151729414	151814166	16	-0.2776	NEUTRAL	NA	1	LRBA
TCGA.CK.5914.01A	4	151752942	151842306	24	0.3668	NEUTRAL	NA	1	LRBA
TCGA.CK.5914.01A	4	151849620	152095781	22	-0.3692	NEUTRAL	NA	3	"LRBA,RPS3A,SH3D19"
TCGA.AG.3891.01A	4	152021585	152086692	17	0.1697	NEUTRAL	NA	2	"RPS3A,SH3D19"
TCGA.AG.3891.01A	4	152095781	153562032	37	-0.2876	NEUTRAL	NA	6	"FAM160A1,FBXW7,GATB,PRSS48,SH3D19,TMEM154"
TCGA.AZ.4684.01A	4	152203272	152567679	10	0.273	NEUTRAL	NA	2	"FAM160A1,PRSS48"
TCGA.AU.3779	4	152222202	152383961	26	0.2671	NEUTRAL	NA	1	FAM160A1
TCGA.AU.3779	4	152389107	153127585	252	-0.2557	NEUTRAL	NA	2	"FAM160A1,GATB"
TCGA.A6.2685	4	152479764	190921708	12175	-0.3022	NEUTRAL	NA	125	Too-Many
TCGA.AA.3511	4	152489086	190921708	12165	-0.5103	NEUTRAL	NA	125	Too-Many
TCGA.AA.3495	4	152560661	153438332	268	-0.4921	NEUTRAL	NA	3	"FAM160A1,FBXW7,GATB"
TCGA.CK.5914.01A	4	152592287	152679884	12	-0.0962	NEUTRAL	NA	1	GATB
TCGA.AA.A024.01A	4	152600908	190947494	1169	-0.0222	NEUTRAL	NA	125	Too-Many
TCGA.AG.3611.01A	4	152679884	165878206	325	-0.4604	NEUTRAL	NA	49	"ANP32C,APELA,ARFIP1,ASIC5,C4orf45,C4orf46,CTSO,DCHS2,ETFDH,FAM198B,FAM218A,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FSTL5,GATB,GLRB,GRIA2,GUCY1A3,GUCY1B3,KIAA0922,LRAT,MAP9,MARCH1,MND1,NAF1,NPY1R,NPY2R,NPY5R,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RNF175,RXFP1,SFRP2,TDO2,TIGD4,TKTL2,TLR2,TMA16,TMEM144,TMEM154,TRIM2,TRIM61"
TCGA.AG.A01W.01A	4	152718042	154763489	110	-0.2359	NEUTRAL	NA	11	"ARFIP1,FBXW7,FHDC1,KIAA0922,MND1,RNF175,SFRP2,TIGD4,TLR2,TMEM154,TRIM2"
TCGA.AA.3532	4	152791978	190921708	12097	-0.2552	NEUTRAL	NA	123	Too-Many
TCGA.F4.6854	4	152791978	190921708	12079	-0.0114	NEUTRAL	NA	123	Too-Many
TCGA.F4.6704	4	152798620	190921708	12073	-0.1837	NEUTRAL	NA	123	Too-Many
TCGA.G4.6299	4	152855406	176203171	6791	0.003	NEUTRAL	NA	77	"AADAT,ADAM29,ANP32C,ANXA10,APELA,ARFIP1,ASIC5,C4orf27,C4orf45,C4orf46,CBR4,CEP44,CLCN3,CPE,CTSO,DCHS2,DDX60,DDX60L,ETFDH,FAM198B,FAM218A,FBXO8,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FSTL5,GALNT7,GALNTL6,GLRA3,GLRB,GRIA2,GUCY1A3,GUCY1B3,HAND2,HMGB2,HPGD,KIAA0922,KLHL2,LRAT,MAP9,MARCH1,MFAP3L,MND1,MSMO1,NAF1,NEK1,NPY1R,NPY2R,NPY5R,PALLD,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RNF175,RXFP1,SAP30,SCRG1,SFRP2,SH3RF1,SPOCK3,TDO2,TIGD4,TKTL2,TLL1,TLR2,TMA16,TMEM144,TMEM154,TMEM192,TRIM2,TRIM60,TRIM61"
TCGA.DC.6155	4	152913746	153285806	102	-0.4417	NEUTRAL	NA	1	FBXW7
TCGA.DM.A28C	4	152994129	190921708	11964	0.0335	NEUTRAL	NA	123	Too-Many
TCGA.DM.A1HB	4	153218591	190921708	11744	-0.0413	NEUTRAL	NA	123	Too-Many
TCGA.AU.3779	4	153285806	154047401	197	-0.1635	NEUTRAL	NA	5	"ARFIP1,FBXW7,FHDC1,TIGD4,TMEM154"
TCGA.AA.3495	4	153450359	154033326	176	0.0704	NEUTRAL	NA	5	"ARFIP1,FBXW7,FHDC1,TIGD4,TMEM154"
TCGA.AZ.4308	4	153481734	153631059	51	0.0714	NEUTRAL	NA	1	TMEM154
TCGA.DC.6155	4	153481734	154200319	229	0.0176	NEUTRAL	NA	5	"ARFIP1,FHDC1,TIGD4,TMEM154,TRIM2"
TCGA.CK.5914.01A	4	153562032	154255927	37	-0.4935	NEUTRAL	NA	5	"ARFIP1,FHDC1,TIGD4,TMEM154,TRIM2"
TCGA.AG.3891.01A	4	153564204	154279579	38	-0.0529	NEUTRAL	NA	6	"ARFIP1,FHDC1,MND1,TIGD4,TMEM154,TRIM2"
TCGA.AA.A00F.01A	4	153690587	153893479	19	0.0122	NEUTRAL	NA	3	"ARFIP1,FHDC1,TIGD4"
TCGA.AG.A00C.01A	4	153690587	153893479	19	0.273	NEUTRAL	NA	3	"ARFIP1,FHDC1,TIGD4"
TCGA.AZ.4308	4	153716516	153879153	21	0.2772	NEUTRAL	NA	2	"ARFIP1,FHDC1"
TCGA.AZ.4684.01A	4	153864163	155160273	82	-0.5137	NEUTRAL	NA	8	"DCHS2,FHDC1,KIAA0922,MND1,RNF175,SFRP2,TLR2,TRIM2"
TCGA.AG.4009.01A	4	153875317	154672511	65	0.0227	NEUTRAL	NA	6	"FHDC1,KIAA0922,MND1,RNF175,TLR2,TRIM2"
TCGA.AA.A00F.01A	4	153895795	154216418	6	-0.425	NEUTRAL	NA	2	"FHDC1,TRIM2"
TCGA.AG.A00C.01A	4	153895795	178283394	750	-0.1306	NEUTRAL	NA	80	"AADAT,ADAM29,ANP32C,ANXA10,APELA,ASB5,ASIC5,C4orf27,C4orf45,C4orf46,CBR4,CEP44,CLCN3,CPE,CTSO,DCHS2,DDX60,DDX60L,ETFDH,FAM198B,FAM218A,FBXO8,FGA,FGB,FGG,FHDC1,FNIP2,FSTL5,GALNT7,GALNTL6,GLRA3,GLRB,GPM6A,GRIA2,GUCY1A3,GUCY1B3,HAND2,HMGB2,HPGD,KIAA0922,KLHL2,LRAT,MAP9,MARCH1,MFAP3L,MND1,MSMO1,NAF1,NEIL3,NEK1,NPY1R,NPY2R,NPY5R,PALLD,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RNF175,RXFP1,SAP30,SCRG1,SFRP2,SH3RF1,SPATA4,SPCS3,SPOCK3,TDO2,TKTL2,TLL1,TLR2,TMA16,TMEM144,TMEM192,TRIM2,TRIM60,TRIM61,VEGFC,WDR17"
TCGA.AZ.4308	4	153910380	154164828	120	0.027	NEUTRAL	NA	1	TRIM2
TCGA.AA.3495	4	154035527	156861104	973	-0.4796	NEUTRAL	NA	20	"ASIC5,CTSO,DCHS2,FGA,FGB,FGG,GUCY1A3,GUCY1B3,KIAA0922,LRAT,MAP9,MND1,NPY2R,PLRG1,RBM46,RNF175,SFRP2,TDO2,TLR2,TRIM2"
TCGA.AG.3909.01A	4	154196996	154249660	9	-0.3094	NEUTRAL	NA	1	TRIM2
TCGA.DC.6155	4	154202650	154732127	185	0.2873	NEUTRAL	NA	6	"KIAA0922,MND1,RNF175,SFRP2,TLR2,TRIM2"
TCGA.AA.A00F.01A	4	154236595	154279579	10	-0.0022	NEUTRAL	NA	2	"MND1,TRIM2"
TCGA.AA.A00N.01A	4	154236595	154471208	18	-0.3112	NEUTRAL	NA	3	"KIAA0922,MND1,TRIM2"
TCGA.AA.A01Z	4	154244952	190921708	11663	-0.0169	NEUTRAL	NA	118	Too-Many
TCGA.CK.5914.01A	4	154265794	164058275	346	-0.0214	NEUTRAL	NA	33	"ASIC5,C4orf45,C4orf46,CTSO,DCHS2,ETFDH,FAM198B,FGA,FGB,FGG,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,KIAA0922,LRAT,MAP9,MND1,NAF1,NPY2R,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RNF175,RXFP1,SFRP2,TDO2,TLR2,TMEM144"
TCGA.AG.3909.01A	4	154279579	154557411	35	0.0964	NEUTRAL	NA	2	"KIAA0922,MND1"
TCGA.AZ.4616	4	154314930	155996426	606	0.008	NEUTRAL	NA	12	"DCHS2,FGA,FGB,FGG,KIAA0922,LRAT,MND1,PLRG1,RBM46,RNF175,SFRP2,TLR2"
TCGA.AA.A00F.01A	4	154315352	164050122	249	-0.3605	NEUTRAL	NA	33	"ASIC5,C4orf45,C4orf46,CTSO,DCHS2,ETFDH,FAM198B,FGA,FGB,FGG,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,KIAA0922,LRAT,MAP9,MND1,NAF1,NPY2R,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RNF175,RXFP1,SFRP2,TDO2,TLR2,TMEM144"
TCGA.AG.3891.01A	4	154478067	165878206	346	-0.2394	NEUTRAL	NA	41	"ANP32C,APELA,ASIC5,C4orf45,C4orf46,CTSO,DCHS2,ETFDH,FAM198B,FAM218A,FGA,FGB,FGG,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,KIAA0922,LRAT,MAP9,MARCH1,NAF1,NPY1R,NPY2R,NPY5R,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RNF175,RXFP1,SFRP2,TDO2,TKTL2,TLR2,TMA16,TMEM144,TRIM61"
TCGA.AZ.4308	4	154510842	156737384	794	0.0018	NEUTRAL	NA	15	"DCHS2,FGA,FGB,FGG,GUCY1A3,GUCY1B3,KIAA0922,LRAT,MAP9,NPY2R,PLRG1,RBM46,RNF175,SFRP2,TLR2"
TCGA.AG.A00Y.01A	4	154649317	184233475	759	-0.2566	NEUTRAL	NA	79	"AADAT,ADAM29,AGA,ANP32C,ANXA10,APELA,ASB5,ASIC5,C4orf27,C4orf45,C4orf46,CBR4,CEP44,CLCN3,CPE,CTSO,DCHS2,DCTD,DDX60,DDX60L,ETFDH,FAM198B,FAM218A,FBXO8,FGA,FGB,FGG,FNIP2,FSTL5,GALNT7,GALNTL6,GLRA3,GLRB,GPM6A,GRIA2,GUCY1A3,GUCY1B3,HAND2,HMGB2,HPGD,KLHL2,LRAT,MAP9,MARCH1,MFAP3L,MSMO1,NAF1,NEIL3,NEK1,NPY1R,NPY2R,NPY5R,PALLD,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RNF175,RXFP1,SAP30,SCRG1,SFRP2,SH3RF1,SPATA4,SPCS3,SPOCK3,TDO2,TENM3,TKTL2,TLL1,TMA16,TMEM144,TMEM192,TRIM60,TRIM61,VEGFC,WDR17,WWC2"
TCGA.AA.3850	4	154689929	159441626	1484	-0.47375	NEUTRAL	NA	20	"ASIC5,CTSO,DCHS2,FAM198B,FGA,FGB,FGG,GLRB,GRIA2,GUCY1A3,GUCY1B3,LRAT,MAP9,NPY2R,PDGFC,PLRG1,RBM46,SFRP2,TDO2,TMEM144"
TCGA.DC.6155	4	154733294	161031035	1849	0.0027	NEUTRAL	NA	26	"ASIC5,C4orf45,C4orf46,CTSO,DCHS2,ETFDH,FAM198B,FGA,FGB,FGG,FNIP2,GLRB,GRIA2,GUCY1A3,GUCY1B3,LRAT,MAP9,NPY2R,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RXFP1,TDO2,TMEM144"
TCGA.AA.3941	4	154738478	159440664	1457	-0.3884	NEUTRAL	NA	19	"ASIC5,CTSO,DCHS2,FAM198B,FGA,FGB,FGG,GLRB,GRIA2,GUCY1A3,GUCY1B3,LRAT,MAP9,NPY2R,PDGFC,PLRG1,RBM46,TDO2,TMEM144"
TCGA.AA.3982	4	154743518	169047304	4175	-0.0941	NEUTRAL	NA	45	"ANP32C,ANXA10,APELA,ASIC5,C4orf45,C4orf46,CPE,CTSO,DCHS2,ETFDH,FAM198B,FAM218A,FGA,FGB,FGG,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,KLHL2,LRAT,MAP9,MARCH1,MSMO1,NAF1,NPY1R,NPY2R,NPY5R,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RXFP1,SPOCK3,TDO2,TKTL2,TLL1,TMA16,TMEM144,TMEM192,TRIM60,TRIM61"
TCGA.AG.A01W.01A	4	154843464	164994594	330	-0.1378	NEUTRAL	NA	33	"ASIC5,C4orf45,C4orf46,CTSO,DCHS2,ETFDH,FAM198B,FGA,FGB,FGG,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,LRAT,MAP9,MARCH1,NAF1,NPY1R,NPY2R,NPY5R,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RXFP1,TDO2,TKTL2,TMA16,TMEM144"
TCGA.AG.3909.01A	4	155155646	155532942	65	0.0992	NEUTRAL	NA	5	"DCHS2,FGA,FGB,FGG,PLRG1"
TCGA.AG.4009.01A	4	155155646	170557033	513	-0.0948	NEUTRAL	NA	52	"ANP32C,ANXA10,APELA,ASIC5,C4orf45,C4orf46,CBR4,CLCN3,CPE,CTSO,DCHS2,DDX60,DDX60L,ETFDH,FAM198B,FAM218A,FGA,FGB,FGG,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,KLHL2,LRAT,MAP9,MARCH1,MSMO1,NAF1,NEK1,NPY1R,NPY2R,NPY5R,PALLD,PDGFC,PLRG1,PPID,RAPGEF2,RBM46,RXFP1,SH3RF1,SPOCK3,TDO2,TKTL2,TLL1,TMA16,TMEM144,TMEM192,TRIM60,TRIM61"
TCGA.AZ.4684.01A	4	155161642	159158630	177	0.1277	NEUTRAL	NA	19	"ASIC5,CTSO,DCHS2,FAM198B,FGA,FGB,FGG,GLRB,GRIA2,GUCY1A3,GUCY1B3,LRAT,MAP9,NPY2R,PDGFC,PLRG1,RBM46,TDO2,TMEM144"
TCGA.AG.3909.01A	4	155717853	156283156	16	-0.3883	NEUTRAL	NA	3	"MAP9,NPY2R,RBM46"
TCGA.AA.3530	4	156197345	190921708	10969	-0.053	NEUTRAL	NA	104	Too-Many
TCGA.AA.A010.01A	4	156268888	158283924	94	-0.3443	NEUTRAL	NA	9	"ASIC5,CTSO,GLRB,GRIA2,GUCY1A3,GUCY1B3,MAP9,PDGFC,TDO2"
TCGA.AF.6136	4	156438082	190349043	10787	-0.2729	NEUTRAL	NA	102	Too-Many
TCGA.CM.6675	4	156453318	190921708	10864	-0.1412	NEUTRAL	NA	103	Too-Many
TCGA.AA.A01S	4	156470554	158184095	538	-0.02795	NEUTRAL	NA	8	"ASIC5,CTSO,GLRB,GRIA2,GUCY1A3,GUCY1B3,PDGFC,TDO2"
TCGA.AG.A020	4	156531331	157450821	319	0.0073	NEUTRAL	NA	5	"ASIC5,CTSO,GUCY1A3,GUCY1B3,TDO2"
TCGA.AG.3909.01A	4	156617968	159593529	115	-0.0862	NEUTRAL	NA	13	"ASIC5,C4orf46,CTSO,ETFDH,FAM198B,GLRB,GRIA2,GUCY1A3,GUCY1B3,PDGFC,RXFP1,TDO2,TMEM144"
TCGA.AA.3930.01A	4	156727483	156764791	7	-0.1371	NEUTRAL	NA	2	"ASIC5,GUCY1B3"
TCGA.AA.3495	4	156864750	190921708	10763	-0.0025	NEUTRAL	NA	99	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf46,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CTSO,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,ETFDH,F11,FAM149A,FAM198B,FAM218A,FAT1,FBXO8,FNIP2,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GLRB,GPM6A,GRIA2,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDGFC,PDLIM3,PPID,PRIMPOL,RAPGEF2,RWDD4,RXFP1,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM144,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.G4.6295	4	156916489	157821399	306	-0.365	NEUTRAL	NA	1	PDGFC
TCGA.AZ.4308	4	157425724	157831538	132	0.0554	NEUTRAL	NA	1	PDGFC
TCGA.CL.4957	4	157530827	170723005	3758	0.0049	NEUTRAL	NA	39	"ANP32C,ANXA10,APELA,C4orf27,C4orf45,C4orf46,CBR4,CLCN3,CPE,DDX60,DDX60L,ETFDH,FAM198B,FAM218A,FNIP2,FSTL5,GLRB,GRIA2,KLHL2,MARCH1,MSMO1,NAF1,NEK1,NPY1R,NPY5R,PALLD,PDGFC,PPID,RAPGEF2,RXFP1,SH3RF1,SPOCK3,TKTL2,TLL1,TMA16,TMEM144,TMEM192,TRIM60,TRIM61"
TCGA.A6.2671	4	158782029	190921708	10199	0.0025	NEUTRAL	NA	95	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf46,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,ETFDH,F11,FAM149A,FAM198B,FAM218A,FAT1,FBXO8,FNIP2,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PPID,PRIMPOL,RAPGEF2,RWDD4,RXFP1,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM144,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AZ.4308	4	158906655	159551520	150	0.0772	NEUTRAL	NA	3	"FAM198B,RXFP1,TMEM144"
TCGA.AA.A010.01A	4	159048518	166033816	150	0.2584	NEUTRAL	NA	22	"ANP32C,APELA,C4orf45,C4orf46,ETFDH,FAM198B,FAM218A,FNIP2,FSTL5,MARCH1,NAF1,NPY1R,NPY5R,PPID,RAPGEF2,RXFP1,TKTL2,TMA16,TMEM144,TMEM192,TRIM60,TRIM61"
TCGA.AA.3980.01A	4	159133773	178911546	543	-0.2081	NEUTRAL	NA	56	"AADAT,ADAM29,AGA,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf46,CBR4,CEP44,CLCN3,CPE,DDX60,DDX60L,ETFDH,FAM218A,FBXO8,FNIP2,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,KLHL2,MARCH1,MFAP3L,MSMO1,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PPID,RAPGEF2,RXFP1,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,SPOCK3,TKTL2,TLL1,TMA16,TMEM144,TMEM192,TRIM60,TRIM61,VEGFC,WDR17"
TCGA.AA.3867	4	159403070	160715824	348	0.2389	NEUTRAL	NA	7	"C4orf45,C4orf46,ETFDH,FNIP2,PPID,RAPGEF2,RXFP1"
TCGA.AA.3941	4	159441019	160466898	251	0.2561	NEUTRAL	NA	7	"C4orf45,C4orf46,ETFDH,FNIP2,PPID,RAPGEF2,RXFP1"
TCGA.AA.3850	4	159442163	160480428	252	0.20245	NEUTRAL	NA	7	"C4orf45,C4orf46,ETFDH,FNIP2,PPID,RAPGEF2,RXFP1"
TCGA.AA.3930.01A	4	159526169	159538234	4	0.1589	NEUTRAL	NA	1	RXFP1
TCGA.AG.3909.01A	4	159601579	159791418	31	-0.3806	NEUTRAL	NA	3	"ETFDH,FNIP2,PPID"
TCGA.AZ.4616	4	159697698	190921708	9978	-0.3605	NEUTRAL	NA	89	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FNIP2,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RAPGEF2,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.3494	4	159732670	190921708	9996	0.0063	NEUTRAL	NA	89	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FNIP2,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RAPGEF2,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AZ.4684.01A	4	159750219	183659526	500	-0.0685	NEUTRAL	NA	52	"AADAT,ADAM29,AGA,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,CBR4,CEP44,CLCN3,CPE,DDX60,DDX60L,FAM218A,FBXO8,FNIP2,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,KLHL2,MARCH1,MFAP3L,MSMO1,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,RAPGEF2,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,SPOCK3,TENM3,TKTL2,TLL1,TMA16,TMEM192,TRIM60,TRIM61,VEGFC,WDR17"
TCGA.AA.3560	4	159779240	190921708	9993	0.2043	NEUTRAL	NA	89	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FNIP2,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RAPGEF2,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.3952	4	159780243	190921708	9991	-0.0027	NEUTRAL	NA	89	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FNIP2,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RAPGEF2,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AG.3909.01A	4	159881376	164054269	41	-0.0113	NEUTRAL	NA	4	"C4orf45,FSTL5,NAF1,RAPGEF2"
TCGA.AZ.4308	4	160319689	163522447	973	0.01	NEUTRAL	NA	1	FSTL5
TCGA.AA.3867	4	160715912	161974404	383	-0.1211	NEUTRAL	NA	0	None
TCGA.DY.A1DD	4	160742813	190921708	9712	-0.0142	NEUTRAL	NA	86	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.DC.6155	4	161094976	190921708	9595	0.0041	NEUTRAL	NA	86	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.DY.A1DC	4	161233205	161238029	7	-0.0676	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	161264391	161946758	233	0.017	NEUTRAL	NA	0	None
TCGA.DY.A1DF	4	161399533	161488401	43	-0.5033	NEUTRAL	NA	0	None
TCGA.D5.6538	4	161473569	167186170	1736	0.0193	NEUTRAL	NA	17	"ANP32C,APELA,CPE,FAM218A,FSTL5,KLHL2,MARCH1,MSMO1,NAF1,NPY1R,NPY5R,TKTL2,TLL1,TMA16,TMEM192,TRIM60,TRIM61"
TCGA.DY.A1DF	4	161488592	185302245	7636	-0.0057	NEUTRAL	NA	59	"AADAT,ADAM29,AGA,ANP32C,ANXA10,APELA,ASB5,C4orf27,CBR4,CDKN2AIP,CEP44,CLCN3,CLDN22,CLDN24,CPE,DCTD,DDX60,DDX60L,ENPP6,FAM218A,FBXO8,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,ING2,KLHL2,MARCH1,MFAP3L,MSMO1,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,RWDD4,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,VEGFC,WDR17,WWC2"
TCGA.AF.5654	4	161681765	190921708	9420	-0.0177	NEUTRAL	NA	86	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.DY.A1DC	4	161963564	161988054	10	0.0063	NEUTRAL	NA	0	None
TCGA.AA.3867	4	162001069	189725261	8992	0.0463	NEUTRAL	NA	85	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.DY.A1DC	4	162006823	162257378	89	0.0112	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	162264289	163348075	295	0.0017	NEUTRAL	NA	1	FSTL5
TCGA.AA.3679	4	162633256	190921708	9149	0.3769	NEUTRAL	NA	86	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.3975	4	163324015	190543147	8863	-0.0276	NEUTRAL	NA	84	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.DY.A1DC	4	163366515	163482553	26	0.023	NEUTRAL	NA	0	None
TCGA.AA.3941	4	163366515	165647319	694	-0.4769	NEUTRAL	NA	7	"ANP32C,MARCH1,NAF1,NPY1R,NPY5R,TKTL2,TMA16"
TCGA.DY.A1DC	4	163503262	164565526	286	0.0354	NEUTRAL	NA	6	"MARCH1,NAF1,NPY1R,NPY5R,TKTL2,TMA16"
TCGA.AZ.4308	4	163603403	163712713	25	0.0296	NEUTRAL	NA	0	None
TCGA.AZ.4308	4	163855612	164189862	72	0.0189	NEUTRAL	NA	1	NAF1
TCGA.AA.A01S	4	163894144	164464135	144	-0.02915	NEUTRAL	NA	6	"MARCH1,NAF1,NPY1R,NPY5R,TKTL2,TMA16"
TCGA.AA.A00F.01A	4	164054269	164392956	13	0.0235	NEUTRAL	NA	4	"NAF1,NPY1R,NPY5R,TKTL2"
TCGA.F5.6864	4	164139836	164233865	19	0.3314	NEUTRAL	NA	0	None
TCGA.F5.6864	4	164245404	190921708	8701	-0.2114	NEUTRAL	NA	84	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.D5.5538	4	164328367	173911136	2784	0.0191	NEUTRAL	NA	26	"AADAT,ANP32C,ANXA10,APELA,C4orf27,CBR4,CLCN3,CPE,DDX60,DDX60L,FAM218A,GALNTL6,KLHL2,MARCH1,MFAP3L,MSMO1,NEK1,PALLD,SH3RF1,SPOCK3,TKTL2,TLL1,TMA16,TMEM192,TRIM60,TRIM61"
TCGA.CK.5914.01A	4	164415855	164534469	11	0.353	NEUTRAL	NA	2	"MARCH1,TMA16"
TCGA.AG.3909.01A	4	164415855	166009571	20	0.0674	NEUTRAL	NA	8	"ANP32C,APELA,FAM218A,MARCH1,TMA16,TMEM192,TRIM60,TRIM61"
TCGA.DY.A1DC	4	164582456	171634816	2100	0.0004	NEUTRAL	NA	23	"AADAT,ANP32C,ANXA10,APELA,C4orf27,CBR4,CLCN3,CPE,DDX60,DDX60L,FAM218A,KLHL2,MARCH1,MFAP3L,MSMO1,NEK1,PALLD,SH3RF1,SPOCK3,TLL1,TMEM192,TRIM60,TRIM61"
TCGA.AZ.4308	4	164963146	167416325	787	0.0131	NEUTRAL	NA	11	"ANP32C,APELA,CPE,FAM218A,KLHL2,MARCH1,MSMO1,TLL1,TMEM192,TRIM60,TRIM61"
TCGA.CK.5914.01A	4	165118111	166795035	45	-0.3681	NEUTRAL	NA	11	"ANP32C,APELA,CPE,FAM218A,KLHL2,MARCH1,MSMO1,TLL1,TMEM192,TRIM60,TRIM61"
TCGA.A6.2675	4	165363908	183004953	5586	0.2283	NEUTRAL	NA	40	"AADAT,ADAM29,AGA,ANXA10,APELA,ASB5,C4orf27,CBR4,CEP44,CLCN3,CPE,DDX60,DDX60L,FAM218A,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,KLHL2,MFAP3L,MSMO1,NEIL3,NEK1,PALLD,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,SPOCK3,TLL1,TMEM192,TRIM60,TRIM61,VEGFC,WDR17"
TCGA.D5.6927	4	165605067	190921708	8250	-0.0098	NEUTRAL	NA	78	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MFAP3L,MSMO1,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TLL1,TLR3,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.3941	4	165648365	166443998	240	0.2606	NEUTRAL	NA	8	"APELA,CPE,FAM218A,KLHL2,MSMO1,TMEM192,TRIM60,TRIM61"
TCGA.AA.3850	4	165656199	166445456	233	0.13845	NEUTRAL	NA	8	"APELA,CPE,FAM218A,KLHL2,MSMO1,TMEM192,TRIM60,TRIM61"
TCGA.CK.4948.01B	4	165878206	166128944	12	-0.3134	NEUTRAL	NA	5	"FAM218A,KLHL2,TMEM192,TRIM60,TRIM61"
TCGA.AG.3891.01A	4	165879333	166024080	9	0.1561	NEUTRAL	NA	4	"FAM218A,TMEM192,TRIM60,TRIM61"
TCGA.AA.A00F.01A	4	165879333	166307355	25	-0.0784	NEUTRAL	NA	7	"CPE,FAM218A,KLHL2,MSMO1,TMEM192,TRIM60,TRIM61"
TCGA.AG.3611.01A	4	165890628	166128944	4	0.0022	NEUTRAL	NA	4	"KLHL2,TMEM192,TRIM60,TRIM61"
TCGA.AG.3909.01A	4	166021760	166235131	14	-0.4262	NEUTRAL	NA	2	"KLHL2,TMEM192"
TCGA.AG.3891.01A	4	166033816	186997753	638	-0.1828	NEUTRAL	NA	64	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,DCTD,DDX60,DDX60L,ENPP6,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,LRP2BP,MFAP3L,MSMO1,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TLL1,TLR3,TMEM192,TRAPPC11,UFSP2,VEGFC,WDR17,WWC2"
TCGA.CK.4948.01B	4	166131217	169108480	74	0.0431	NEUTRAL	NA	6	"ANXA10,CPE,KLHL2,MSMO1,SPOCK3,TLL1"
TCGA.AG.3611.01A	4	166141047	169227553	104	-0.4464	NEUTRAL	NA	7	"ANXA10,CPE,DDX60,KLHL2,MSMO1,SPOCK3,TLL1"
TCGA.AA.3514	4	166147711	190921708	8087	-0.015	NEUTRAL	NA	73	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MFAP3L,MSMO1,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TLL1,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.A010.01A	4	166184300	166964399	40	0.0758	NEUTRAL	NA	4	"CPE,KLHL2,MSMO1,TLL1"
TCGA.AG.A01W.01A	4	166243506	171244802	242	-0.1554	NEUTRAL	NA	16	"AADAT,ANXA10,C4orf27,CBR4,CLCN3,CPE,DDX60,DDX60L,KLHL2,MFAP3L,MSMO1,NEK1,PALLD,SH3RF1,SPOCK3,TLL1"
TCGA.AA.A00F.01A	4	166385534	169227553	84	-0.4982	NEUTRAL	NA	5	"ANXA10,CPE,DDX60,SPOCK3,TLL1"
TCGA.AG.3909.01A	4	166385534	169344731	109	-0.0303	NEUTRAL	NA	6	"ANXA10,CPE,DDX60,DDX60L,SPOCK3,TLL1"
TCGA.CA.5254	4	166510432	168034318	401	-0.4234	NEUTRAL	NA	2	"SPOCK3,TLL1"
TCGA.CK.5914.01A	4	166910526	166963127	10	0.2564	NEUTRAL	NA	1	TLL1
TCGA.AG.A020	4	167030752	190921708	7789	-0.0095	NEUTRAL	NA	69	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MFAP3L,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.G4.6322	4	167448511	177855677	2937	0.0452	NEUTRAL	NA	29	"AADAT,ADAM29,ANXA10,ASB5,C4orf27,CBR4,CEP44,CLCN3,DDX60,DDX60L,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,MFAP3L,NEK1,PALLD,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,SPOCK3,VEGFC,WDR17"
TCGA.AZ.4308	4	167510527	167864929	78	0.0496	NEUTRAL	NA	1	SPOCK3
TCGA.CK.5914.01A	4	167658566	169083631	13	0.272	NEUTRAL	NA	2	"ANXA10,SPOCK3"
TCGA.AG.3902	4	167812519	167955848	33	-0.0361	NEUTRAL	NA	1	SPOCK3
TCGA.D5.6538	4	167850191	179902194	3520	0.0083	NEUTRAL	NA	31	"AADAT,ADAM29,AGA,ANXA10,ASB5,C4orf27,CBR4,CEP44,CLCN3,DDX60,DDX60L,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,MFAP3L,NEIL3,NEK1,PALLD,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,SPOCK3,VEGFC,WDR17"
TCGA.AG.3902	4	167956472	189767873	7256	0.2742	NEUTRAL	NA	68	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAT1,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MFAP3L,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.CA.5254	4	168055021	172885360	1407	0.0102	NEUTRAL	NA	13	"AADAT,ANXA10,C4orf27,CBR4,CLCN3,DDX60,DDX60L,GALNTL6,MFAP3L,NEK1,PALLD,SH3RF1,SPOCK3"
TCGA.AA.3509.01A	4	168155127	183664276	348	-0.3668	NEUTRAL	NA	32	"AADAT,ADAM29,AGA,ANXA10,ASB5,C4orf27,CBR4,CEP44,CLCN3,DDX60,DDX60L,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,MFAP3L,NEIL3,NEK1,PALLD,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,SPOCK3,TENM3,VEGFC,WDR17"
TCGA.AZ.4308	4	168576598	169121001	132	0.065	NEUTRAL	NA	1	ANXA10
TCGA.DM.A28A	4	168619279	184412580	5205	-0.2988	NEUTRAL	NA	36	"AADAT,ADAM29,AGA,ANXA10,ASB5,C4orf27,CBR4,CDKN2AIP,CEP44,CLCN3,CLDN22,CLDN24,DCTD,DDX60,DDX60L,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,MFAP3L,NEIL3,NEK1,PALLD,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,TENM3,VEGFC,WDR17,WWC2"
TCGA.F4.6808	4	169017773	178142535	2652	0.0435	NEUTRAL	NA	28	"AADAT,ADAM29,ANXA10,ASB5,C4orf27,CBR4,CEP44,CLCN3,DDX60,DDX60L,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,MFAP3L,NEK1,PALLD,SAP30,SCRG1,SH3RF1,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.AA.3850	4	169059062	169454316	150	-0.12045	NEUTRAL	NA	4	"ANXA10,DDX60,DDX60L,PALLD"
TCGA.AA.3941	4	169059062	171089926	661	0.2034	NEUTRAL	NA	11	"AADAT,ANXA10,C4orf27,CBR4,CLCN3,DDX60,DDX60L,MFAP3L,NEK1,PALLD,SH3RF1"
TCGA.AA.3982	4	169059062	171095752	665	0.3037	NEUTRAL	NA	11	"AADAT,ANXA10,C4orf27,CBR4,CLCN3,DDX60,DDX60L,MFAP3L,NEK1,PALLD,SH3RF1"
TCGA.AA.A010.01A	4	169138033	169183123	15	-0.3013	NEUTRAL	NA	1	DDX60
TCGA.AA.3844	4	169167966	171092556	643	0.0037	NEUTRAL	NA	10	"AADAT,C4orf27,CBR4,CLCN3,DDX60,DDX60L,MFAP3L,NEK1,PALLD,SH3RF1"
TCGA.CK.4948.01B	4	169169290	190947494	693	-0.0802	NEUTRAL	NA	68	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,FRG2,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MFAP3L,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.CK.5914.01A	4	169176812	169204550	14	0.3062	NEUTRAL	NA	1	DDX60
TCGA.CK.5914.01A	4	169205919	170041923	74	-0.0897	NEUTRAL	NA	5	"CBR4,DDX60,DDX60L,PALLD,SH3RF1"
TCGA.AG.3611.01A	4	169229110	169343628	7	-0.0484	NEUTRAL	NA	2	"DDX60,DDX60L"
TCGA.AA.A00F.01A	4	169229110	172735705	79	-0.2238	NEUTRAL	NA	11	"AADAT,C4orf27,CBR4,CLCN3,DDX60,DDX60L,GALNTL6,MFAP3L,NEK1,PALLD,SH3RF1"
TCGA.AA.A02H.01A	4	169292721	169305745	7	0.0245	NEUTRAL	NA	1	DDX60L
TCGA.AA.A010.01A	4	169292721	169382823	31	0.0531	NEUTRAL	NA	1	DDX60L
TCGA.AA.A00N.01A	4	169296481	169353619	22	0.0184	NEUTRAL	NA	1	DDX60L
TCGA.CM.5862	4	169382662	170635196	423	0.255	NEUTRAL	NA	6	"CBR4,CLCN3,DDX60L,NEK1,PALLD,SH3RF1"
TCGA.AG.3909.01A	4	169432699	170458908	50	-0.0806	NEUTRAL	NA	4	"CBR4,NEK1,PALLD,SH3RF1"
TCGA.AG.3611.01A	4	169432699	170638904	47	-0.4191	NEUTRAL	NA	5	"CBR4,CLCN3,NEK1,PALLD,SH3RF1"
TCGA.AA.3850	4	169456007	170362150	327	0.23505	NEUTRAL	NA	4	"CBR4,NEK1,PALLD,SH3RF1"
TCGA.AA.A010.01A	4	169911249	169928755	4	0.181	NEUTRAL	NA	1	CBR4
TCGA.AA.3522	4	169986808	174232473	1107	0.0419	NEUTRAL	NA	8	"AADAT,C4orf27,CLCN3,GALNT7,GALNTL6,MFAP3L,NEK1,SH3RF1"
TCGA.AA.A010.01A	4	170057438	170601170	34	-0.0567	NEUTRAL	NA	3	"CLCN3,NEK1,SH3RF1"
TCGA.CK.5914.01A	4	170189974	173269647	69	-0.2542	NEUTRAL	NA	7	"AADAT,C4orf27,CLCN3,GALNTL6,MFAP3L,NEK1,SH3RF1"
TCGA.AZ.4308	4	170337629	170818614	99	0.0526	NEUTRAL	NA	3	"C4orf27,CLCN3,NEK1"
TCGA.AG.A008.01A	4	170428149	170523613	15	0.1095	NEUTRAL	NA	1	NEK1
TCGA.AA.3850	4	170471182	171095752	180	0.22215	NEUTRAL	NA	5	"AADAT,C4orf27,CLCN3,MFAP3L,NEK1"
TCGA.AG.A008.01A	4	170557033	190947494	530	-0.2125	NEUTRAL	NA	62	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf27,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,FRG2,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MFAP3L,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AG.4009.01A	4	170611630	170627999	6	-0.4043	NEUTRAL	NA	1	CLCN3
TCGA.AG.3909.01A	4	170616715	170989693	21	-0.2986	NEUTRAL	NA	4	"AADAT,C4orf27,CLCN3,MFAP3L"
TCGA.AG.4009.01A	4	170634182	170926694	12	-0.1382	NEUTRAL	NA	3	"C4orf27,CLCN3,MFAP3L"
TCGA.AG.3611.01A	4	170641011	170678916	9	-0.026	NEUTRAL	NA	2	"C4orf27,CLCN3"
TCGA.CM.5862	4	170651796	188990446	6216	-0.2078	NEUTRAL	NA	57	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf27,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MFAP3L,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.CL.4957	4	170726301	172656435	546	-0.4135	NEUTRAL	NA	2	"AADAT,MFAP3L"
TCGA.AG.A011.01A	4	171008220	190947494	494	0.3312	NEUTRAL	NA	59	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,FRG2,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.A01S	4	171068076	171371040	105	0.00705	NEUTRAL	NA	0	None
TCGA.AA.3941	4	171091043	178897620	2245	-0.3411	NEUTRAL	NA	19	"ADAM29,AGA,ASB5,CEP44,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,NEIL3,SAP30,SCRG1,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.AA.3844	4	171095752	182590242	3713	-0.398	NEUTRAL	NA	19	"ADAM29,AGA,ASB5,CEP44,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,NEIL3,SAP30,SCRG1,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.AA.3850	4	171102803	171634816	158	-0.48815	NEUTRAL	NA	0	None
TCGA.AA.3982	4	171102803	182825369	3839	-0.0574	NEUTRAL	NA	19	"ADAM29,AGA,ASB5,CEP44,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,NEIL3,SAP30,SCRG1,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.AA.A01R	4	171366728	180417261	2693	0.3655	NEUTRAL	NA	19	"ADAM29,AGA,ASB5,CEP44,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,NEIL3,SAP30,SCRG1,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.AZ.4308	4	171590972	172551921	249	0.0038	NEUTRAL	NA	0	None
TCGA.AA.3850	4	171658287	178830428	2063	-0.39005	NEUTRAL	NA	19	"ADAM29,AGA,ASB5,CEP44,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,NEIL3,SAP30,SCRG1,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.DY.A1DC	4	171660038	171747439	23	-0.0812	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	171786883	187747223	5454	-0.0086	NEUTRAL	NA	53	"ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,UFSP2,VEGFC,WDR17,WWC2"
TCGA.A6.6653	4	172042930	190921708	6384	-0.0133	NEUTRAL	NA	57	"ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AY.6196	4	172255108	190921708	6252	-0.0347	NEUTRAL	NA	57	"ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.CM.5868	4	172367610	179440708	2068	-0.0855	NEUTRAL	NA	19	"ADAM29,AGA,ASB5,CEP44,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,NEIL3,SAP30,SCRG1,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.CL.4957	4	172661676	181294748	2689	-0.026	NEUTRAL	NA	19	"ADAM29,AGA,ASB5,CEP44,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,NEIL3,SAP30,SCRG1,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.AA.A010.01A	4	172735705	174225095	20	0.0128	NEUTRAL	NA	2	"GALNT7,GALNTL6"
TCGA.AG.3906.01A	4	172735705	174254610	27	-0.0406	NEUTRAL	NA	3	"GALNT7,GALNTL6,HMGB2"
TCGA.AG.3909.01A	4	173150760	173803914	6	0.017	NEUTRAL	NA	1	GALNTL6
TCGA.AG.4009.01A	4	173150760	174238753	20	-0.0919	NEUTRAL	NA	2	"GALNT7,GALNTL6"
TCGA.AG.A01W.01A	4	173387344	184668413	216	-0.1443	NEUTRAL	NA	28	"ADAM29,AGA,ASB5,CDKN2AIP,CEP44,CLDN22,CLDN24,DCTD,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,ING2,NEIL3,RWDD4,SAP30,SCRG1,SPATA4,SPCS3,TENM3,TRAPPC11,VEGFC,WDR17,WWC2"
TCGA.AZ.4308	4	173465966	175112535	450	0.0432	NEUTRAL	NA	6	"GALNT7,GALNTL6,HAND2,HMGB2,SAP30,SCRG1"
TCGA.AA.A01S	4	173851087	176549721	696	-0.00565	NEUTRAL	NA	11	"ADAM29,CEP44,FBXO8,GALNT7,GALNTL6,GLRA3,HAND2,HMGB2,HPGD,SAP30,SCRG1"
TCGA.AG.3909.01A	4	173852263	174169114	7	0.3292	NEUTRAL	NA	2	"GALNT7,GALNTL6"
TCGA.D5.5538	4	173916230	174333606	83	0.339	NEUTRAL	NA	5	"GALNT7,GALNTL6,HMGB2,SAP30,SCRG1"
TCGA.AA.A00F.01A	4	174089949	175443043	44	-0.1052	NEUTRAL	NA	8	"CEP44,FBXO8,GALNT7,HAND2,HMGB2,HPGD,SAP30,SCRG1"
TCGA.AG.3909.01A	4	174213208	174225095	6	-0.1322	NEUTRAL	NA	1	GALNT7
TCGA.CK.5914.01A	4	174213208	174238753	8	-0.1841	NEUTRAL	NA	1	GALNT7
TCGA.D5.5538	4	174334126	178052990	1123	0.0423	NEUTRAL	NA	12	"ADAM29,ASB5,CEP44,FBXO8,GLRA3,GPM6A,HAND2,HPGD,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.AA.3522	4	174411466	190921708	5788	-0.3266	NEUTRAL	NA	52	"ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GLRA3,GPM6A,HAND2,HELT,HPGD,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AG.3906.01A	4	174537039	183676091	138	-0.1524	NEUTRAL	NA	14	"ADAM29,AGA,ASB5,CEP44,FBXO8,GLRA3,GPM6A,HPGD,NEIL3,SPATA4,SPCS3,TENM3,VEGFC,WDR17"
TCGA.AA.A010.01A	4	174537039	183694578	145	0.3002	NEUTRAL	NA	14	"ADAM29,AGA,ASB5,CEP44,FBXO8,GLRA3,GPM6A,HPGD,NEIL3,SPATA4,SPCS3,TENM3,VEGFC,WDR17"
TCGA.AF.3914.01A	4	174537039	190947494	463	-0.1524	NEUTRAL	NA	52	"ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,FRG2,GLRA3,GPM6A,HELT,HPGD,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.DM.A1D6	4	175341658	190921708	5535	-0.0679	NEUTRAL	NA	49	"ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,GLRA3,GPM6A,HELT,HPGD,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AG.4009.01A	4	175413059	183696034	122	-0.0589	NEUTRAL	NA	12	"ADAM29,AGA,ASB5,GLRA3,GPM6A,HPGD,NEIL3,SPATA4,SPCS3,TENM3,VEGFC,WDR17"
TCGA.AA.A00F.01A	4	175443478	177098162	48	-0.4299	NEUTRAL	NA	5	"ADAM29,GLRA3,GPM6A,HPGD,WDR17"
TCGA.AZ.4308	4	175458237	175681426	81	-0.0049	NEUTRAL	NA	1	GLRA3
TCGA.CK.5914.01A	4	175598192	175749826	8	-0.4766	NEUTRAL	NA	1	GLRA3
TCGA.AZ.4682	4	175640941	190921708	5424	-0.0221	NEUTRAL	NA	48	"ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,GLRA3,GPM6A,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AG.3909.01A	4	175649584	175749826	4	-0.0973	NEUTRAL	NA	1	GLRA3
TCGA.AZ.4308	4	175803163	177354949	422	-0.0164	NEUTRAL	NA	6	"ADAM29,ASB5,GPM6A,SPATA4,SPCS3,WDR17"
TCGA.AG.3909.01A	4	175896629	176572948	7	0.3063	NEUTRAL	NA	2	"ADAM29,GPM6A"
TCGA.CK.5914.01A	4	175896629	177077162	28	0.1595	NEUTRAL	NA	3	"ADAM29,GPM6A,WDR17"
TCGA.G4.6299	4	176370405	190921708	5249	-0.0354	NEUTRAL	NA	46	"ACSL1,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,GPM6A,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.D5.5539	4	176495910	177566815	386	-0.3482	NEUTRAL	NA	5	"ASB5,GPM6A,SPATA4,SPCS3,WDR17"
TCGA.AG.3909.01A	4	176594780	177190027	43	-0.094	NEUTRAL	NA	4	"ASB5,GPM6A,SPATA4,WDR17"
TCGA.A6.6137	4	176718486	176770025	14	-0.4942	NEUTRAL	NA	1	GPM6A
TCGA.A6.6137	4	176771296	190921708	5154	0.0099	NEUTRAL	NA	46	"ACSL1,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,GPM6A,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.A6.5667	4	176941308	190921708	5091	-0.4241	NEUTRAL	NA	45	"ACSL1,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.A6.3808.01A	4	177063081	187560805	406	-0.2678	NEUTRAL	NA	41	"ACSL1,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,UFSP2,VEGFC,WDR17,WWC2"
TCGA.AA.A00F.01A	4	177098582	184129059	40	-0.1458	NEUTRAL	NA	10	"AGA,ASB5,DCTD,NEIL3,SPATA4,SPCS3,TENM3,VEGFC,WDR17,WWC2"
TCGA.CK.5914.01A	4	177116469	177241181	8	0.1759	NEUTRAL	NA	3	"ASB5,SPATA4,SPCS3"
TCGA.D5.5539	4	177572076	190921708	4836	-0.0164	NEUTRAL	NA	41	"ACSL1,AGA,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WWC2,ZFP42"
TCGA.A6.3807	4	177631029	181158379	1202	-0.3938	NEUTRAL	NA	3	"AGA,NEIL3,VEGFC"
TCGA.AG.3909.01A	4	177632606	178283394	13	-0.0746	NEUTRAL	NA	2	"NEIL3,VEGFC"
TCGA.CK.5914.01A	4	177632606	178283394	14	0.2352	NEUTRAL	NA	2	"NEIL3,VEGFC"
TCGA.AA.3713	4	177719592	177823998	36	-0.5092	NEUTRAL	NA	0	None
TCGA.AZ.4308	4	177736811	177975379	71	0.1128	NEUTRAL	NA	0	None
TCGA.AA.3713	4	177828116	190921708	4758	0.0003	NEUTRAL	NA	40	"ACSL1,AGA,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.CA.5797	4	177871359	179227355	427	-0.5009	NEUTRAL	NA	2	"AGA,NEIL3"
TCGA.G4.6322	4	177949653	190921708	4736	0.023	NEUTRAL	NA	40	"ACSL1,AGA,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AZ.4308	4	178259933	178830428	197	-0.0032	NEUTRAL	NA	2	"AGA,NEIL3"
TCGA.AG.A00C.01A	4	178352825	178881934	10	0.3498	NEUTRAL	NA	1	AGA
TCGA.AG.3909.01A	4	178363352	183594116	10	-0.0842	NEUTRAL	NA	2	"AGA,TENM3"
TCGA.CK.5914.01A	4	178363352	183675508	27	0.1463	NEUTRAL	NA	2	"AGA,TENM3"
TCGA.AA.3529	4	178561701	180336831	609	0.3622	NEUTRAL	NA	0	None
TCGA.AG.A00C.01A	4	178896916	184365904	58	-0.1531	NEUTRAL	NA	6	"CDKN2AIP,CLDN22,CLDN24,DCTD,TENM3,WWC2"
TCGA.AA.3941	4	178926023	183143951	1732	-0.3509	NEUTRAL	NA	0	None
TCGA.AA.3850	4	178926482	183114013	1711	-0.39615	NEUTRAL	NA	0	None
TCGA.AZ.4308	4	179002060	179157752	38	0.0743	NEUTRAL	NA	0	None
TCGA.CA.5797	4	179227597	190921708	4320	-0.0832	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.4T.AA8H	4	179374121	181128687	646	-0.0164	NEUTRAL	NA	0	None
TCGA.AZ.4308	4	179388851	179666065	126	0.0566	NEUTRAL	NA	0	None
TCGA.CM.5868	4	179444484	182523765	1261	-0.4505	NEUTRAL	NA	0	None
TCGA.F5.6814	4	179540612	190921708	4169	-0.4855	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AZ.4308	4	180142558	181032788	323	-0.0032	NEUTRAL	NA	0	None
TCGA.AA.3529	4	180337113	181510038	473	-0.0045	NEUTRAL	NA	0	None
TCGA.4T.AA8H	4	181146154	190921708	3616	-0.0322	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.NH.A50T	4	181146154	190921708	3594	-0.2423	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.CL.4957	4	181295873	183419510	1014	-0.4797	NEUTRAL	NA	1	TENM3
TCGA.AA.3529	4	181575457	190921708	3395	0.013	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.D5.6538	4	181635792	190921708	3372	-0.0145	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.CI.6622	4	182174930	190921708	3162	-0.0076	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AZ.4308	4	182234917	182727481	276	0.001	NEUTRAL	NA	0	None
TCGA.AA.A01S	4	182264558	182751196	270	0.00175	NEUTRAL	NA	0	None
TCGA.CM.5868	4	182529554	190921708	2963	-0.0187	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.CM.5349	4	182569351	190921708	2953	-0.4643	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AA.3844	4	182615102	182757841	75	-0.1269	NEUTRAL	NA	0	None
TCGA.AA.3844	4	182789613	187793339	1878	0.0299	NEUTRAL	NA	34	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,UFSP2,WWC2"
TCGA.AA.3982	4	182827786	190921708	2790	0.3451	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AD.6899	4	182989200	190921708	2743	0.2642	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.A6.2675	4	183007921	190921708	2711	-0.3006	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AA.3854	4	183069702	190921708	2700	-0.3677	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AA.3850	4	183114348	183654098	253	0.10485	NEUTRAL	NA	1	TENM3
TCGA.AA.3941	4	183144357	183717027	265	0.1314	NEUTRAL	NA	1	TENM3
TCGA.5M.AAT5	4	183233692	190921708	2616	-0.3641	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.CL.4957	4	183422868	190921708	2529	0	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AY.A71X	4	183464676	190921708	2503	-0.0038	NEUTRAL	NA	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AG.3909.01A	4	183650069	183676091	10	-0.0551	NEUTRAL	NA	1	TENM3
TCGA.AG.A01N.01A	4	183657981	185685953	129	-0.3741	NEUTRAL	NA	16	"ACSL1,CASP3,CDKN2AIP,CENPU,CLDN22,CLDN24,DCTD,ENPP6,ING2,IRF2,PRIMPOL,RWDD4,STOX2,TENM3,TRAPPC11,WWC2"
TCGA.AA.3850	4	183660360	183717027	30	0.00045	NEUTRAL	NA	1	TENM3
TCGA.AA.A029.01A	4	183674554	190947494	321	-0.4308	NEUTRAL	NA	39	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,FRG2,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AG.A01J.01A	4	183674554	190947494	326	-0.2913	NEUTRAL	NA	39	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,FRG2,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AG.A025.01A	4	183676091	190947494	324	-0.2518	NEUTRAL	NA	39	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,FRG2,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AG.A023.01A	4	183713375	190947494	315	-0.2217	NEUTRAL	NA	39	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,FRG2,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AG.4009.01A	4	183720767	184166547	11	-0.2611	NEUTRAL	NA	3	"DCTD,TENM3,WWC2"
TCGA.AA.3850	4	183729136	187735609	1436	0.31025	NEUTRAL	NA	33	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TLR3,TRAPPC11,UFSP2,WWC2"
TCGA.3L.AA1B	4	183761426	190921708	2391	-0.0604	NEUTRAL	NA	37	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AA.A01S	4	183858410	184098333	56	0.03625	NEUTRAL	NA	1	WWC2
TCGA.D5.5538	4	183897857	186336464	826	-0.0025	NEUTRAL	NA	21	"ACSL1,ANKRD37,CASP3,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,ENPP6,HELT,ING2,IRF2,LRP2BP,PRIMPOL,RWDD4,SLC25A4,SNX25,STOX2,TRAPPC11,UFSP2,WWC2"
TCGA.AA.A010.01A	4	184020604	184207093	20	0.2862	NEUTRAL	NA	1	WWC2
TCGA.CK.5914.01A	4	184020604	184365904	25	-0.041	NEUTRAL	NA	4	"CDKN2AIP,CLDN22,CLDN24,WWC2"
TCGA.AG.3909.01A	4	184114702	184365904	24	0.0541	NEUTRAL	NA	4	"CDKN2AIP,CLDN22,CLDN24,WWC2"
TCGA.AA.A00F.01A	4	184166547	184233475	16	-0.4601	NEUTRAL	NA	1	WWC2
TCGA.AG.4009.01A	4	184169840	184366651	19	0.0639	NEUTRAL	NA	4	"CDKN2AIP,CLDN22,CLDN24,WWC2"
TCGA.AG.3906.01A	4	184171052	186583206	202	-0.0225	NEUTRAL	NA	25	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,ENPP6,HELT,ING2,IRF2,LRP2BP,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TRAPPC11,UFSP2,WWC2"
TCGA.AA.A00F.01A	4	184236752	184589128	15	0.0883	NEUTRAL	NA	7	"CDKN2AIP,CLDN22,CLDN24,ING2,RWDD4,TRAPPC11,WWC2"
TCGA.AG.A00Y.01A	4	184236752	187209557	237	0.0398	NEUTRAL	NA	30	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,ENPP6,F11,FAM149A,HELT,ING2,IRF2,KLKB1,LRP2BP,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TLR3,TRAPPC11,UFSP2,WWC2"
TCGA.AA.A010.01A	4	184366651	184607719	24	0.0581	NEUTRAL	NA	4	"CDKN2AIP,ING2,RWDD4,TRAPPC11"
TCGA.AG.4009.01A	4	184367212	184633679	32	-0.2711	NEUTRAL	NA	4	"CDKN2AIP,ING2,RWDD4,TRAPPC11"
TCGA.CM.5341	4	184568702	190921708	2138	-0.2166	NEUTRAL	NA	31	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,CYP4V2,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.A00F.01A	4	184595849	186318257	119	-0.1827	NEUTRAL	NA	14	"ACSL1,ANKRD37,CASP3,CENPU,CFAP97,ENPP6,HELT,IRF2,LRP2BP,PRIMPOL,SLC25A4,SNX25,STOX2,TRAPPC11"
TCGA.AG.3909.01A	4	184596265	185724437	88	-0.1674	NEUTRAL	NA	8	"ACSL1,CASP3,CENPU,ENPP6,IRF2,PRIMPOL,STOX2,TRAPPC11"
TCGA.AA.A00N.01A	4	184600464	184622803	14	-0.1577	NEUTRAL	NA	1	TRAPPC11
TCGA.AG.A00C.01A	4	184603835	184930853	19	0.0381	NEUTRAL	NA	2	"STOX2,TRAPPC11"
TCGA.CK.5914.01A	4	184603835	186318257	124	-0.1762	NEUTRAL	NA	14	"ACSL1,ANKRD37,CASP3,CENPU,CFAP97,ENPP6,HELT,IRF2,LRP2BP,PRIMPOL,SLC25A4,SNX25,STOX2,TRAPPC11"
TCGA.AA.A01F.01A	4	184612419	185045277	19	-0.076	NEUTRAL	NA	3	"ENPP6,STOX2,TRAPPC11"
TCGA.AA.A017.01A	4	184622803	187115627	173	-0.1615	NEUTRAL	NA	22	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,CYP4V2,ENPP6,FAM149A,HELT,IRF2,LRP2BP,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,STOX2,TLR3,TRAPPC11,UFSP2"
TCGA.AG.A01W.01A	4	184799514	186178415	100	-0.3765	NEUTRAL	NA	11	"ACSL1,CASP3,CENPU,CFAP97,ENPP6,HELT,IRF2,PRIMPOL,SLC25A4,SNX25,STOX2"
TCGA.AA.3989	4	184835759	190921708	2071	-0.2205	NEUTRAL	NA	29	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,CYP4V2,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,STOX2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AG.4009.01A	4	184922429	185350084	20	0.2588	NEUTRAL	NA	3	"ENPP6,IRF2,STOX2"
TCGA.AG.A00C.01A	4	184938259	185320017	12	-0.3466	NEUTRAL	NA	3	"ENPP6,IRF2,STOX2"
TCGA.AA.3971	4	184965955	185490815	251	-0.5132	NEUTRAL	NA	2	"ENPP6,IRF2"
TCGA.AA.A01F.01A	4	185074656	190884165	215	-0.3232	NEUTRAL	NA	28	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,CYP4V2,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.CM.6679	4	185123671	190921708	1925	-0.00145	NEUTRAL	NA	28	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,CYP4V2,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.3693	4	185196777	185571775	143	-0.0279	NEUTRAL	NA	3	"CASP3,IRF2,PRIMPOL"
TCGA.AA.A00N.01A	4	185329263	186299185	90	-0.3302	NEUTRAL	NA	10	"ACSL1,CASP3,CENPU,CFAP97,HELT,IRF2,LRP2BP,PRIMPOL,SLC25A4,SNX25"
TCGA.AG.A00C.01A	4	185329263	186318257	90	0.0303	NEUTRAL	NA	11	"ACSL1,ANKRD37,CASP3,CENPU,CFAP97,HELT,IRF2,LRP2BP,PRIMPOL,SLC25A4,SNX25"
TCGA.AA.3971	4	185491837	190921708	1767	-0.0501	NEUTRAL	NA	26	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,CYP4V2,F11,FAM149A,FAT1,FRG1,HELT,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.A010.01A	4	185550376	185599344	13	-0.4585	NEUTRAL	NA	2	"CASP3,PRIMPOL"
TCGA.AG.4009.01A	4	185603345	185615685	4	-0.1836	NEUTRAL	NA	2	"CENPU,PRIMPOL"
TCGA.AA.A010.01A	4	185603345	185941380	37	0.2926	NEUTRAL	NA	4	"ACSL1,CENPU,HELT,PRIMPOL"
TCGA.AG.4009.01A	4	185616401	185940034	32	0.1058	NEUTRAL	NA	3	"ACSL1,CENPU,HELT"
TCGA.AA.A01I.01A	4	185689428	190947494	200	-0.272	NEUTRAL	NA	24	"ACSL1,ANKRD37,C4orf47,CCDC110,CFAP97,CYP4V2,F11,FAM149A,FAT1,FRG1,FRG2,HELT,KLKB1,LRP2BP,MTNR1A,PDLIM3,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AG.A01N.01A	4	185689428	190947494	198	-0.3962	NEUTRAL	NA	24	"ACSL1,ANKRD37,C4orf47,CCDC110,CFAP97,CYP4V2,F11,FAM149A,FAT1,FRG1,FRG2,HELT,KLKB1,LRP2BP,MTNR1A,PDLIM3,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AG.3909.01A	4	185940034	186318257	38	-0.4567	NEUTRAL	NA	6	"ANKRD37,CFAP97,HELT,LRP2BP,SLC25A4,SNX25"
TCGA.AG.4009.01A	4	186096923	186179990	5	-0.4475	NEUTRAL	NA	2	"CFAP97,SNX25"
TCGA.DY.A1DF	4	186138877	190921708	1549	-0.0134	NEUTRAL	NA	19	"ANKRD37,C4orf47,CCDC110,CYP4V2,F11,FAM149A,FAT1,FRG1,KLKB1,LRP2BP,MTNR1A,PDLIM3,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.A00L.01A	4	186168424	187454846	126	-0.4141	NEUTRAL	NA	14	"ANKRD37,C4orf47,CCDC110,CYP4V2,F11,FAM149A,KLKB1,LRP2BP,MTNR1A,PDLIM3,SNX25,SORBS2,TLR3,UFSP2"
TCGA.AG.4009.01A	4	186185560	186379270	40	-0.0513	NEUTRAL	NA	6	"ANKRD37,C4orf47,CCDC110,LRP2BP,SNX25,UFSP2"
TCGA.AA.3544	4	186234024	190921708	1523	-0.0109	NEUTRAL	NA	19	"ANKRD37,C4orf47,CCDC110,CYP4V2,F11,FAM149A,FAT1,FRG1,KLKB1,LRP2BP,MTNR1A,PDLIM3,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.A00F.01A	4	186320040	186384074	21	0.1606	NEUTRAL	NA	4	"ANKRD37,C4orf47,CCDC110,UFSP2"
TCGA.AG.A01W.01A	4	186320919	186603101	49	-0.2575	NEUTRAL	NA	6	"ANKRD37,C4orf47,CCDC110,PDLIM3,SORBS2,UFSP2"
TCGA.D5.5538	4	186346238	186664000	124	0.3724	NEUTRAL	NA	5	"C4orf47,CCDC110,PDLIM3,SORBS2,UFSP2"
TCGA.AG.A00C.01A	4	186382152	186583206	30	-0.2799	NEUTRAL	NA	3	"CCDC110,PDLIM3,SORBS2"
TCGA.AA.A00F.01A	4	186392052	186598153	27	-0.3092	NEUTRAL	NA	3	"CCDC110,PDLIM3,SORBS2"
TCGA.CK.5914.01A	4	186392733	186999977	38	-0.2647	NEUTRAL	NA	4	"CCDC110,PDLIM3,SORBS2,TLR3"
TCGA.AA.3941	4	186473659	186586316	41	0.334	NEUTRAL	NA	1	SORBS2
TCGA.AG.4009.01A	4	186508712	186583206	19	0.0628	NEUTRAL	NA	1	SORBS2
TCGA.CM.4750.01A	4	186508712	190874180	125	-0.191	NEUTRAL	NA	12	"CYP4V2,F11,FAM149A,FAT1,FRG1,KLKB1,MTNR1A,SORBS2,TLR3,TRIML1,TRIML2,ZFP42"
TCGA.AA.3941	4	186588130	186600823	10	-0.3637	NEUTRAL	NA	1	SORBS2
TCGA.CK.6748	4	186589897	188108982	612	0.3119	NEUTRAL	NA	8	"CYP4V2,F11,FAM149A,FAT1,KLKB1,MTNR1A,SORBS2,TLR3"
TCGA.AA.3941	4	186603463	186765718	94	0.3362	NEUTRAL	NA	1	SORBS2
TCGA.AG.A01W.01A	4	186629052	189263251	121	-0.1991	NEUTRAL	NA	11	"CYP4V2,F11,FAM149A,FAT1,KLKB1,MTNR1A,SORBS2,TLR3,TRIML1,TRIML2,ZFP42"
TCGA.D5.5538	4	186665442	187652654	386	-0.008	NEUTRAL	NA	8	"CYP4V2,F11,FAM149A,FAT1,KLKB1,MTNR1A,SORBS2,TLR3"
TCGA.AA.3941	4	186767328	186782290	9	-0.5051	NEUTRAL	NA	1	SORBS2
TCGA.AA.3941	4	186784321	190921708	1307	0.1898	NEUTRAL	NA	12	"CYP4V2,F11,FAM149A,FAT1,FRG1,KLKB1,MTNR1A,SORBS2,TLR3,TRIML1,TRIML2,ZFP42"
TCGA.DM.A28A	4	186893349	190921708	1270	-0.2989	NEUTRAL	NA	11	"CYP4V2,F11,FAM149A,FAT1,FRG1,KLKB1,MTNR1A,TLR3,TRIML1,TRIML2,ZFP42"
TCGA.AA.A00F.01A	4	186997753	189026256	67	-0.0624	NEUTRAL	NA	9	"CYP4V2,F11,FAM149A,FAT1,KLKB1,MTNR1A,TLR3,TRIML2,ZFP42"
TCGA.AG.3891.01A	4	186999977	187077117	7	0.2793	NEUTRAL	NA	2	"FAM149A,TLR3"
TCGA.AG.A00C.01A	4	187073066	187584433	69	-0.21	NEUTRAL	NA	6	"CYP4V2,F11,FAM149A,FAT1,KLKB1,MTNR1A"
TCGA.AG.3891.01A	4	187078679	190947494	96	-0.1569	NEUTRAL	NA	11	"CYP4V2,F11,FAM149A,FAT1,FRG1,FRG2,KLKB1,MTNR1A,TRIML1,TRIML2,ZFP42"
TCGA.AA.A010.01A	4	187112938	187131571	10	-0.0636	NEUTRAL	NA	1	CYP4V2
TCGA.AG.3906.01A	4	187115627	187157886	13	-0.0472	NEUTRAL	NA	2	"CYP4V2,KLKB1"
TCGA.AA.A017.01A	4	187120070	190947494	86	-0.1589	NEUTRAL	NA	10	"CYP4V2,F11,FAT1,FRG1,FRG2,KLKB1,MTNR1A,TRIML1,TRIML2,ZFP42"
TCGA.CK.5914.01A	4	187129971	187208821	27	-0.3052	NEUTRAL	NA	3	"CYP4V2,F11,KLKB1"
TCGA.AG.3909.01A	4	187129971	187209557	27	-0.3505	NEUTRAL	NA	3	"CYP4V2,F11,KLKB1"
TCGA.AG.4009.01A	4	187129971	187584433	52	-0.1104	NEUTRAL	NA	5	"CYP4V2,F11,FAT1,KLKB1,MTNR1A"
TCGA.AG.3906.01A	4	187177107	187524020	25	-0.1524	NEUTRAL	NA	4	"F11,FAT1,KLKB1,MTNR1A"
TCGA.AA.A00K.01A	4	187201576	190884165	36	0.1373	NEUTRAL	NA	7	"F11,FAT1,FRG1,MTNR1A,TRIML1,TRIML2,ZFP42"
TCGA.CK.5914.01A	4	187209557	187560805	26	0.1042	NEUTRAL	NA	3	"F11,FAT1,MTNR1A"
TCGA.AG.3909.01A	4	187454846	187627736	26	0.0046	NEUTRAL	NA	2	"FAT1,MTNR1A"
TCGA.AG.A00Y.01A	4	187454846	189026256	37	-0.3351	NEUTRAL	NA	4	"FAT1,MTNR1A,TRIML2,ZFP42"
TCGA.AA.A00L.01A	4	187476289	187629915	14	0.176	NEUTRAL	NA	2	"FAT1,MTNR1A"
TCGA.AA.A00D.01A	4	187509756	188923931	14	0.1645	NEUTRAL	NA	2	"FAT1,ZFP42"
TCGA.AA.A00Q.01A	4	187509756	188923931	11	0.1883	NEUTRAL	NA	2	"FAT1,ZFP42"
TCGA.AG.3906.01A	4	187535296	189026256	22	-0.1735	NEUTRAL	NA	3	"FAT1,TRIML2,ZFP42"
TCGA.AG.A01Y	4	187581475	188109425	213	0.1365	NEUTRAL	NA	1	FAT1
TCGA.AA.A010.01A	4	187627736	188925760	7	-0.3741	NEUTRAL	NA	2	"FAT1,ZFP42"
TCGA.AA.3967.01A	4	187627736	190947494	32	0.0898	NEUTRAL	NA	6	"FAT1,FRG1,FRG2,TRIML1,TRIML2,ZFP42"
TCGA.AG.A00C.01A	4	187627736	190947494	30	0.1556	NEUTRAL	NA	6	"FAT1,FRG1,FRG2,TRIML1,TRIML2,ZFP42"
TCGA.AA.3850	4	187747223	188608122	299	-0.05115	NEUTRAL	NA	0	None
TCGA.AA.3844	4	187809026	187835552	24	0.2338	NEUTRAL	NA	0	None
TCGA.DY.A1DC	4	187815249	190921708	932	-0.0259	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AA.3844	4	187836194	187870974	14	-0.199	NEUTRAL	NA	0	None
TCGA.AA.3844	4	187870987	187878164	9	0.252	NEUTRAL	NA	0	None
TCGA.AA.3844	4	187897987	190921708	893	-0.1708	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AA.3977	4	187943282	190921708	876	-0.0074	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AA.3872	4	188036391	190921708	840	-0.2136	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AZ.6598	4	188059518	190921708	828	-0.0129	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.CK.6748	4	188109425	190921708	805	-0.3768	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AA.3697	4	188113962	190921708	800	0.2888	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.D5.5538	4	188457878	189577145	338	-0.0034	NEUTRAL	NA	3	"TRIML1,TRIML2,ZFP42"
TCGA.AA.3850	4	188627934	188648304	4	-0.00675	NEUTRAL	NA	0	None
TCGA.AA.A01S	4	188856842	189106480	70	-0.06595	NEUTRAL	NA	3	"TRIML1,TRIML2,ZFP42"
TCGA.AA.A00D.01A	4	188924315	190884165	17	-0.4251	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AA.A00Q.01A	4	188924315	190884165	17	-0.4047	NEUTRAL	NA	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AG.4009.01A	4	188924865	190947494	26	-0.0288	NEUTRAL	NA	5	"FRG1,FRG2,TRIML1,TRIML2,ZFP42"
TCGA.CM.5862	4	188992439	190921708	557	0.2264	NEUTRAL	NA	3	"FRG1,TRIML1,TRIML2"
TCGA.AA.A02K.01A	4	189026257	190873267	9	0.1962	NEUTRAL	NA	3	"FRG1,TRIML1,TRIML2"
TCGA.AG.3909.01A	4	189060662	189067925	5	0.3391	NEUTRAL	NA	1	TRIML1
TCGA.AA.A00F.01A	4	189060662	190884165	9	-0.3043	NEUTRAL	NA	2	"FRG1,TRIML1"
TCGA.CK.5914.01A	4	189060662	190947494	21	0.0116	NEUTRAL	NA	3	"FRG1,FRG2,TRIML1"
TCGA.AA.3980.01A	4	189067925	190947494	13	0.006	NEUTRAL	NA	3	"FRG1,FRG2,TRIML1"
TCGA.AG.3581	4	189300954	190921708	474	-0.0664	NEUTRAL	NA	1	FRG1
TCGA.AZ.4308	4	189365382	189725261	120	0.0906	NEUTRAL	NA	0	None
TCGA.AA.3850	4	189456232	190921708	417	-0.05115	NEUTRAL	NA	1	FRG1
TCGA.A6.6649	4	189599148	190921708	359	-0.0847	NEUTRAL	NA	1	FRG1
TCGA.AA.3867	4	189732193	190921708	325	0.0325	NEUTRAL	NA	1	FRG1
TCGA.AG.3902	4	189773353	190921708	296	0.3256	NEUTRAL	NA	1	FRG1
TCGA.AA.3492	4	189952641	190921708	244	-0.0451	NEUTRAL	NA	1	FRG1
TCGA.A6.3807	4	190326381	190921708	104	0.2453	NEUTRAL	NA	1	FRG1
TCGA.5M.AAT4	4	190413641	190921708	89	-0.3002	NEUTRAL	NA	1	FRG1
TCGA.DC.6681	4	190491397	190520856	6	-0.4752	NEUTRAL	NA	0	None
TCGA.DC.6681	4	190539287	190921708	62	-0.0661	NEUTRAL	NA	1	FRG1
TCGA.AA.3866	4	190563986	190921708	56	-0.2326	NEUTRAL	NA	1	FRG1
TCGA.AA.3975	4	190575443	190921708	55	-0.0368	NEUTRAL	NA	1	FRG1
TCGA.DY.A1DG	4	190604046	190921708	53	0.2971	NEUTRAL	NA	1	FRG1
TCGA.EI.6508	4	190604046	190921708	53	-0.1146	NEUTRAL	NA	1	FRG1
TCGA.AG.4021	4	190765402	190921708	20	-0.0636	NEUTRAL	NA	1	FRG1
TCGA.D5.6533	4	190792946	190921708	14	-0.0066	NEUTRAL	NA	1	FRG1
TCGA.AG.3906.01A	4	190862099	190947494	13	-0.3667	NEUTRAL	NA	2	"FRG1,FRG2"
TCGA.AG.A00Y.01A	4	190862099	190947494	12	-0.1231	NEUTRAL	NA	2	"FRG1,FRG2"
TCGA.AG.A015.01A	4	190862099	190947494	13	-0.1464	NEUTRAL	NA	2	"FRG1,FRG2"
TCGA.AA.A010.01A	4	190873266	190947494	14	-0.3135	NEUTRAL	NA	2	"FRG1,FRG2"
TCGA.AA.A02H.01A	4	190874180	190947494	9	-0.1189	NEUTRAL	NA	2	"FRG1,FRG2"
TCGA.AA.A02K.01A	4	190874245	190947495	9	-0.4506	NEUTRAL	NA	2	"FRG1,FRG2"
TCGA.CM.4750.01A	4	190876145	190947494	12	0.2847	NEUTRAL	NA	2	"FRG1,FRG2"
TCGA.AA.3939.01A	4	190905397	190947494	3	-0.2689	NEUTRAL	NA	1	FRG2
TCGA.AG.A01W.01A	4	191099094	191185290	16	-0.095	NEUTRAL	NA	0	None
TCGA.D5.6931	5	51454	81496	3	-0.3766	NEUTRAL	NA	0	None
TCGA.AF.A56K	5	51454	106818	4	-0.3043	NEUTRAL	NA	0	None
TCGA.AA.3666	5	51454	404622	71	0.0558	NEUTRAL	NA	6	"AHRR,CCDC127,LRRC14B,PDCD6,PLEKHG4B,SDHA"
TCGA.AM.5820	5	51454	464152	88	0.3605	NEUTRAL	NA	7	"AHRR,CCDC127,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA"
TCGA.AG.4008	5	51454	685747	125	0.2741	NEUTRAL	NA	10	"AHRR,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP"
TCGA.AZ.5403	5	51454	685747	129	0.1848	NEUTRAL	NA	10	"AHRR,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP"
TCGA.EI.6885	5	51454	685747	128	-0.3925	NEUTRAL	NA	10	"AHRR,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP"
TCGA.AG.3612	5	51454	1003134	153	-0.0814	NEUTRAL	NA	13	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP,TRIP13,ZDHHC11"
TCGA.G4.6323	5	51454	1351537	216	-0.0197	NEUTRAL	NA	19	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.3695	5	51454	1423904	239	0.0948	NEUTRAL	NA	20	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.DC.6157	5	51454	1611398	296	-0.39	NEUTRAL	NA	21	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,LPCAT1,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.3811	5	51454	2319638	611	-0.1389	NEUTRAL	NA	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.A6.4105	5	51454	2341948	636	-0.1223	NEUTRAL	NA	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.3994	5	51454	2341948	634	-0.0055	NEUTRAL	NA	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.DM.A1HB	5	51454	3234436	1214	0.0184	NEUTRAL	NA	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.3890	5	51454	3266759	1264	0.2045	NEUTRAL	NA	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.5M.AAT5	5	51454	3268364	1267	-0.0672	NEUTRAL	NA	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.3941	5	51454	3366556	1325	0.3616	NEUTRAL	NA	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.3850	5	51454	3552144	1414	0.36775	NEUTRAL	NA	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.3982	5	51454	3557670	1415	0.2359	NEUTRAL	NA	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.EI.6883	5	51454	3582215	1443	0.2238	NEUTRAL	NA	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AF.2692	5	51454	4668592	1977	-0.0626	NEUTRAL	NA	27	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.EI.7002	5	51454	4699216	1988	0.2961	NEUTRAL	NA	27	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.3591	5	51454	5798852	2606	0.1015	NEUTRAL	NA	29	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.3L.AA1B	5	51454	6555767	3002	0.0869	NEUTRAL	NA	31	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AG.A020	5	51454	6602543	3031	-0.1165	NEUTRAL	NA	32	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,NSUN2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.F4.6459	5	51454	6639178	3064	0.3192	NEUTRAL	NA	33	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,NSUN2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AG.3742	5	51454	7167839	3299	-0.024	NEUTRAL	NA	34	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.G4.6303	5	51454	7812444	3576	0.2451	NEUTRAL	NA	35	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.CM.5861	5	51454	7901229	3618	-0.0066	NEUTRAL	NA	38	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.NH.A6GC	5	51454	8029264	3698	0.2622	NEUTRAL	NA	38	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.A6.2672	5	51454	8434717	3874	-0.4072	NEUTRAL	NA	38	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.CM.5348	5	51454	8701919	4038	0.0041	NEUTRAL	NA	38	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AZ.6599	5	51454	9205699	4286	-0.043	NEUTRAL	NA	39	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.A6.6653	5	51454	9214027	4286	-0.0615	NEUTRAL	NA	39	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.CM.6163	5	51454	9331847	4327	0.1071	NEUTRAL	NA	39	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.D5.6538	5	51454	9436696	4416	0.308	NEUTRAL	NA	39	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3517	5	51454	9517080	4461	-0.0131	NEUTRAL	NA	39	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.5M.AATA	5	51454	11341217	5398	0.1954	NEUTRAL	NA	48	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3872	5	51454	11509830	5481	0.2055	NEUTRAL	NA	48	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.A6.6652	5	51454	12374753	5745	-0.0292	NEUTRAL	NA	48	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3864	5	51454	15291397	6681	0.0226	NEUTRAL	NA	53	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3972	5	51454	15291397	6690	0.3129	NEUTRAL	NA	53	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3977	5	51454	15328742	6685	0.0167	NEUTRAL	NA	53	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3667	5	51454	15714021	6800	-0.0291	NEUTRAL	NA	54	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.A6.6137	5	51454	15719221	6798	-0.1275	NEUTRAL	NA	54	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3494	5	51454	15719221	6794	-0.4882	NEUTRAL	NA	54	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AU.3779	5	51454	16332498	6984	0	NEUTRAL	NA	55	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3848	5	51454	17504176	7409	-0.025	NEUTRAL	NA	59	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.NH.A6GA	5	51454	18518568	7683	-0.0325	NEUTRAL	NA	59	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AZ.4682	5	51454	18742591	7740	-0.0235	NEUTRAL	NA	59	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.G4.6322	5	51454	18746833	7752	-0.0594	NEUTRAL	NA	59	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AG.A026	5	51454	19902714	8041	0.3478	NEUTRAL	NA	60	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AF.3913	5	51454	20824693	8225	-0.0496	NEUTRAL	NA	60	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.A6.3807	5	51454	21434877	8327	-0.3219	NEUTRAL	NA	60	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.DM.A1D0	5	51454	21434877	8317	-0.0349	NEUTRAL	NA	60	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.G5.6641	5	51454	21516193	8338	0.3583	NEUTRAL	NA	60	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AA.3681	5	51454	21553443	8371	0.306	NEUTRAL	NA	60	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.D5.6922	5	51454	22012232	8471	-0.4088	NEUTRAL	NA	61	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.G4.6626	5	51454	23724291	8918	0.1261	NEUTRAL	NA	62	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.CM.6170	5	51454	24609369	9119	-0.0013	NEUTRAL	NA	63	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.EI.7004	5	51454	24868443	9166	-0.105	NEUTRAL	NA	63	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.BM.6198	5	51454	25283381	9283	-0.46145	NEUTRAL	NA	63	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.A6.5662	5	51454	25420088	9287	-0.0242	NEUTRAL	NA	63	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AG.A01Y	5	51454	26250247	9534	-0.0415	NEUTRAL	NA	63	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.D5.6923	5	51454	26544725	9605	-0.1175	NEUTRAL	NA	63	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.EI.6507	5	51454	27199235	9800	0.0035	NEUTRAL	NA	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AZ.6601	5	51454	27509319	9865	-0.021	NEUTRAL	NA	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AA.A01S	5	51454	27524451	9863	-0.04365	NEUTRAL	NA	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.DM.A1DA	5	51454	27601730	9886	0.1647	NEUTRAL	NA	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AG.A02N	5	51454	27716508	9894	-0.0272	NEUTRAL	NA	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.CM.4752	5	51454	29018198	10206	0.1952	NEUTRAL	NA	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AA.3680	5	51454	30102290	10570	-0.01	NEUTRAL	NA	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.D5.6533	5	51454	30682208	10640	-0.0284	NEUTRAL	NA	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AA.3524	5	51454	33795166	11914	-0.009	NEUTRAL	NA	75	"ADAMTS12,ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf22,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,DROSHA,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GOLPH3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTMR12,MTRR,MYO10,NDUFS6,NKD2,NPR3,NSUN2,OTULIN,PAPD7,PDCD6,PDZD2,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,SUB1,TARS,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZFR,ZNF622"
TCGA.AA.3870	5	51454	34379704	12066	-0.0223	NEUTRAL	NA	79	"ADAMTS12,ADAMTS16,ADCY2,AHRR,AMACR,ANKH,ANKRD33B,BASP1,BRD9,C1QTNF3,C5orf22,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,DROSHA,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GOLPH3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTMR12,MTRR,MYO10,NDUFS6,NKD2,NPR3,NSUN2,OTULIN,PAPD7,PDCD6,PDZD2,PLEKHG4B,PRDM9,ROPN1L,RXFP3,SDHA,SEMA5A,SLC12A7,SLC45A2,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,SUB1,TARS,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZFR,ZNF622"
TCGA.A6.5666	5	51454	34508115	12105	-0.3822	NEUTRAL	NA	79	"ADAMTS12,ADAMTS16,ADCY2,AHRR,AMACR,ANKH,ANKRD33B,BASP1,BRD9,C1QTNF3,C5orf22,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,DROSHA,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GOLPH3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTMR12,MTRR,MYO10,NDUFS6,NKD2,NPR3,NSUN2,OTULIN,PAPD7,PDCD6,PDZD2,PLEKHG4B,PRDM9,ROPN1L,RXFP3,SDHA,SEMA5A,SLC12A7,SLC45A2,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,SUB1,TARS,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZFR,ZNF622"
TCGA.AG.3731	5	51454	37414329	13108	0.027	NEUTRAL	NA	100	"ADAMTS12,ADAMTS16,ADCY2,AGXT2,AHRR,AMACR,ANKH,ANKRD33B,BASP1,BRD9,BRIX1,C1QTNF3,C5orf22,C5orf38,C5orf42,C5orf49,CAPSL,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,DNAJC21,DROSHA,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GOLPH3,ICE1,IL7R,IRX1,IRX2,IRX4,LMBRD2,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTMR12,MTRR,MYO10,NADK2,NDUFS6,NIPBL,NKD2,NPR3,NSUN2,NUP155,OTULIN,PAPD7,PDCD6,PDZD2,PLEKHG4B,PRDM9,PRLR,RAD1,RAI14,RANBP3L,ROPN1L,RXFP3,SDHA,SEMA5A,SKP2,SLC12A7,SLC1A3,SLC45A2,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SPEF2,SRD5A1,SUB1,TARS,TAS2R1,TERT,TPPP,TRIO,TRIP13,TTC23L,UBE2QL1,UGT3A1,UGT3A2,WDR70,ZDHHC11,ZFR,ZNF622"
TCGA.A6.6651	5	51454	37897767	13175	0.2234	NEUTRAL	NA	102	Too-Many
TCGA.AA.3860	5	51454	38596467	13553	-0.0051	NEUTRAL	NA	104	Too-Many
TCGA.F4.6808	5	51454	38780303	13605	0.0189	NEUTRAL	NA	104	Too-Many
TCGA.AA.3697	5	51454	40955560	14368	0.0156	NEUTRAL	NA	115	Too-Many
TCGA.CA.5797	5	51454	45162652	15201	0.0404	NEUTRAL	NA	135	Too-Many
TCGA.AG.3728	5	51454	45251940	15233	-0.0022	NEUTRAL	NA	135	Too-Many
TCGA.AF.2687	5	51454	45939673	15235	0.0744	NEUTRAL	NA	136	Too-Many
TCGA.A6.2674	5	51454	46174863	15294	0.11	NEUTRAL	NA	136	Too-Many
TCGA.CM.6169	5	51454	46251305	15203	0.343	NEUTRAL	NA	136	Too-Many
TCGA.5M.AAT4	5	51454	46328444	15295	0.1471	NEUTRAL	NA	136	Too-Many
TCGA.AY.A8YK	5	51454	46328444	15289	0.3545	NEUTRAL	NA	136	Too-Many
TCGA.AZ.4614	5	51454	46328444	15122	-0.0004	NEUTRAL	NA	136	Too-Many
TCGA.DM.A285	5	51454	46328444	15256	0.3156	NEUTRAL	NA	136	Too-Many
TCGA.AA.3488	5	51454	46383334	15294	0.2654	NEUTRAL	NA	136	Too-Many
TCGA.AA.3968	5	51454	46383334	15282	0.2802	NEUTRAL	NA	136	Too-Many
TCGA.AF.6672	5	51454	46383334	15266	0.3106	NEUTRAL	NA	136	Too-Many
TCGA.AG.3732	5	51454	46383334	15255	0.0168	NEUTRAL	NA	136	Too-Many
TCGA.AY.5543	5	51454	46383334	15177	-0.0112	NEUTRAL	NA	136	Too-Many
TCGA.AZ.6603	5	51454	46383334	15261	0.3497	NEUTRAL	NA	136	Too-Many
TCGA.CA.6719	5	51454	46383334	15246	0.0385	NEUTRAL	NA	136	Too-Many
TCGA.CL.5918	5	51454	46383334	15264	0.0289	NEUTRAL	NA	136	Too-Many
TCGA.D5.6535	5	51454	46383334	15299	0.0255	NEUTRAL	NA	136	Too-Many
TCGA.D5.6924	5	51454	46383334	15257	0.3681	NEUTRAL	NA	136	Too-Many
TCGA.DC.5869	5	51454	46383334	15260	0.2636	NEUTRAL	NA	136	Too-Many
TCGA.DC.6155	5	51454	46383334	15217	-0.0127	NEUTRAL	NA	136	Too-Many
TCGA.DC.6158	5	51454	46383334	15259	0.2071	NEUTRAL	NA	136	Too-Many
TCGA.DY.A1DG	5	51454	46383334	15295	-0.009	NEUTRAL	NA	136	Too-Many
TCGA.F4.6704	5	51454	46383334	15267	0.1468	NEUTRAL	NA	136	Too-Many
TCGA.F5.6702	5	51454	46383334	15232	0.2645	NEUTRAL	NA	136	Too-Many
TCGA.RU.A8FL	5	51454	46383334	15295	0.2216	NEUTRAL	NA	136	Too-Many
TCGA.AA.3502	5	51454	49560858	15288	-0.0027	NEUTRAL	NA	136	Too-Many
TCGA.AG.3881	5	51454	49564627	15300	0	NEUTRAL	NA	136	Too-Many
TCGA.AA.3858	5	51454	49564797	15303	-0.0269	NEUTRAL	NA	136	Too-Many
TCGA.AA.3952	5	51454	49586502	15293	-0.0079	NEUTRAL	NA	136	Too-Many
TCGA.CM.6164	5	51454	50168240	15370	0.095	NEUTRAL	NA	138	Too-Many
TCGA.DM.A1HA	5	51454	50272155	15432	-0.0024	NEUTRAL	NA	138	Too-Many
TCGA.CM.4747	5	51454	50352129	15452	0.2953	NEUTRAL	NA	138	Too-Many
TCGA.F5.6465	5	51454	50752461	15533	-0.0089	NEUTRAL	NA	139	Too-Many
TCGA.AY.A71X	5	51454	50958536	15571	-0.0074	NEUTRAL	NA	139	Too-Many
TCGA.DY.A1DC	5	51454	51762916	15682	-0.0137	NEUTRAL	NA	139	Too-Many
TCGA.DM.A1DB	5	51454	52553429	16099	-0.0315	NEUTRAL	NA	143	Too-Many
TCGA.D5.6927	5	51454	53222029	16234	-0.0083	NEUTRAL	NA	146	Too-Many
TCGA.DY.A1DD	5	51454	53521612	16409	0.3641	NEUTRAL	NA	146	Too-Many
TCGA.AA.3678	5	51454	54046967	16656	0.3098	NEUTRAL	NA	148	Too-Many
TCGA.F4.6461	5	51454	54167839	16655	-0.0043	NEUTRAL	NA	148	Too-Many
TCGA.CM.5341	5	51454	55792644	17158	-0.2313	NEUTRAL	NA	163	Too-Many
TCGA.CA.5254	5	51454	56145996	17313	0.3253	NEUTRAL	NA	165	Too-Many
TCGA.A6.2686	5	51454	56640571	17459	0.1122	NEUTRAL	NA	168	Too-Many
TCGA.A6.2675	5	51454	56978186	17460	0.1821	NEUTRAL	NA	169	Too-Many
TCGA.AG.3598	5	51454	57309749	17703	-0.0293	NEUTRAL	NA	169	Too-Many
TCGA.EI.6508	5	51454	58318051	18139	-0.006	NEUTRAL	NA	173	Too-Many
TCGA.AA.A01Z	5	51454	58319146	18137	-0.0211	NEUTRAL	NA	173	Too-Many
TCGA.DM.A28H	5	51454	58345147	18106	-0.0116	NEUTRAL	NA	173	Too-Many
TCGA.AA.3516	5	51454	58355031	18129	-0.0171	NEUTRAL	NA	173	Too-Many
TCGA.A6.2683	5	51454	58500895	18207	-0.0611	NEUTRAL	NA	173	Too-Many
TCGA.DY.A1H8	5	51454	58659387	18295	-0.0185	NEUTRAL	NA	173	Too-Many
TCGA.AA.3692	5	51454	58674723	18300	-0.0058	NEUTRAL	NA	173	Too-Many
TCGA.AA.3492	5	51454	59105650	18426	-0.0081	NEUTRAL	NA	173	Too-Many
TCGA.DC.6682	5	51454	59106856	18404	-0.0578	NEUTRAL	NA	173	Too-Many
TCGA.AH.6643	5	51454	59172910	18414	0.0884	NEUTRAL	NA	173	Too-Many
TCGA.AF.2689	5	51454	59232621	18468	-0.0373	NEUTRAL	NA	173	Too-Many
TCGA.AA.3713	5	51454	59277289	18477	0.0028	NEUTRAL	NA	173	Too-Many
TCGA.AG.3898	5	51454	59309440	18416	-0.2765	NEUTRAL	NA	173	Too-Many
TCGA.AA.3561	5	51454	60576630	18767	-0.0323	NEUTRAL	NA	178	Too-Many
TCGA.CM.6675	5	51454	61977628	19114	-0.0217	NEUTRAL	NA	184	Too-Many
TCGA.AA.3522	5	51454	62310901	19281	0.0152	NEUTRAL	NA	184	Too-Many
TCGA.AG.3882	5	51454	63867549	19667	-0.3638	NEUTRAL	NA	187	Too-Many
TCGA.DM.A28A	5	51454	64549605	19821	0	NEUTRAL	NA	191	Too-Many
TCGA.EI.6513	5	51454	64574684	19871	-0.0147	NEUTRAL	NA	191	Too-Many
TCGA.DM.A288	5	51454	64708145	19844	-0.0124	NEUTRAL	NA	191	Too-Many
TCGA.AG.3726	5	51454	65051754	19989	-0.0303	NEUTRAL	NA	197	Too-Many
TCGA.AA.3496	5	51454	66070278	20316	-0.0307	NEUTRAL	NA	200	Too-Many
TCGA.D5.6929	5	51454	66123497	20367	0.3641	NEUTRAL	NA	200	Too-Many
TCGA.D5.5539	5	51454	67184583	20793	0.2626	NEUTRAL	NA	201	Too-Many
TCGA.G4.6315	5	51454	68143117	21175	0.0002	NEUTRAL	NA	202	Too-Many
TCGA.D5.6932	5	51454	72181403	21698	0.0401	NEUTRAL	NA	229	Too-Many
TCGA.CM.5864	5	51454	78729888	23957	-0.1007	NEUTRAL	NA	271	Too-Many
TCGA.NH.A50U	5	51454	81678125	24817	-0.456	NEUTRAL	NA	291	Too-Many
TCGA.CM.6677	5	51454	82840258	25134	-0.0087	NEUTRAL	NA	294	Too-Many
TCGA.F4.6460	5	51454	84315141	25605	0.1094	NEUTRAL	NA	296	Too-Many
TCGA.D5.6530	5	51454	84430826	25629	0.0155	NEUTRAL	NA	296	Too-Many
TCGA.AA.3971	5	51454	84831812	25702	-0.0281	NEUTRAL	NA	296	Too-Many
TCGA.CM.4748	5	51454	84984993	25742	-6.00E-04	NEUTRAL	NA	296	Too-Many
TCGA.AZ.4681	5	51454	86979455	26158	-0.0286	NEUTRAL	NA	299	Too-Many
TCGA.AA.3530	5	51454	88470964	26405	-0.0171	NEUTRAL	NA	301	Too-Many
TCGA.DM.A1D4	5	51454	89276485	26612	0.0047	NEUTRAL	NA	301	Too-Many
TCGA.A6.6140	5	51454	90158328	26842	-0.0148	NEUTRAL	NA	306	Too-Many
TCGA.EI.6514	5	51454	91111912	27042	0.2282	NEUTRAL	NA	307	Too-Many
TCGA.NH.A8F8	5	51454	92749637	27404	0.0022	NEUTRAL	NA	307	Too-Many
TCGA.DM.A0XD	5	51454	93275402	27372	-0.0044	NEUTRAL	NA	310	Too-Many
TCGA.G4.6298	5	51454	93806931	27542	-0.0297	NEUTRAL	NA	311	Too-Many
TCGA.DM.A280	5	51454	94400404	27639	-0.0169	NEUTRAL	NA	313	Too-Many
TCGA.AA.3866	5	51454	94571790	27716	0.1902	NEUTRAL	NA	313	Too-Many
TCGA.AA.3655	5	51454	95875163	28096	-0.0044	NEUTRAL	NA	323	Too-Many
TCGA.DM.A1D9	5	51454	96126307	28202	-0.0016	NEUTRAL	NA	325	Too-Many
TCGA.AA.3684	5	51454	97045120	28475	0.1235	NEUTRAL	NA	329	Too-Many
TCGA.EI.6509	5	51454	97045120	28470	0.0027	NEUTRAL	NA	329	Too-Many
TCGA.CM.6161	5	51454	97050611	28405	0.3432	NEUTRAL	NA	329	Too-Many
TCGA.DC.6683	5	51454	97929965	28592	0.0754	NEUTRAL	NA	329	Too-Many
TCGA.EI.6510	5	51454	98491995	28748	0.0361	NEUTRAL	NA	331	Too-Many
TCGA.CA.6715	5	51454	99446755	28947	-0.0094	NEUTRAL	NA	331	Too-Many
TCGA.AA.3518	5	51454	99524108	29018	-0.0084	NEUTRAL	NA	331	Too-Many
TCGA.AY.6197	5	51454	100873497	28748	-0.0018	NEUTRAL	NA	333	Too-Many
TCGA.CA.6716	5	51454	100873497	29334	0.0145	NEUTRAL	NA	333	Too-Many
TCGA.AA.3712	5	51454	101308395	29521	0.0006	NEUTRAL	NA	333	Too-Many
TCGA.F5.6864	5	51454	102018000	29639	-0.0057	NEUTRAL	NA	335	Too-Many
TCGA.F5.6464	5	51454	103046802	29922	0.1344	NEUTRAL	NA	340	Too-Many
TCGA.DM.A1D6	5	51454	104539681	30319	0.0092	NEUTRAL	NA	340	Too-Many
TCGA.AD.6964	5	51454	104706452	30324	0.0217	NEUTRAL	NA	340	Too-Many
TCGA.AH.6903	5	51454	105399291	30411	0.0036	NEUTRAL	NA	340	Too-Many
TCGA.DM.A28G	5	51454	105545145	30444	-0.0096	NEUTRAL	NA	340	Too-Many
TCGA.G5.6235	5	51454	106644173	30745	0.0062	NEUTRAL	NA	340	Too-Many
TCGA.AA.3973	5	51454	109136541	31582	-0.025	NEUTRAL	NA	345	Too-Many
TCGA.AD.6901	5	51454	109353600	31590	-0.2103	NEUTRAL	NA	345	Too-Many
TCGA.CA.5256	5	51454	110443280	31702	6.00E-04	NEUTRAL	NA	349	Too-Many
TCGA.CK.6751	5	51454	111695182	32231	-0.0011	NEUTRAL	NA	353	Too-Many
TCGA.AA.3986	5	51454	112057424	32557	-0.0169	NEUTRAL	NA	354	Too-Many
TCGA.QG.A5YX	5	51454	118195108	34721	0	NEUTRAL	NA	376	Too-Many
TCGA.AF.5654	5	51454	118953694	35085	-0.0175	NEUTRAL	NA	379	Too-Many
TCGA.F4.6807	5	51454	119999007	35417	-0.0369	NEUTRAL	NA	381	Too-Many
TCGA.A6.5656	5	51454	125494699	37229	0.0074	NEUTRAL	NA	394	Too-Many
TCGA.A6.2681	5	51454	125778934	37485	0.1435	NEUTRAL	NA	395	Too-Many
TCGA.AD.6965	5	51454	132602042	39050	-0.3401	NEUTRAL	NA	441	Too-Many
TCGA.AA.A01T	5	51454	134914232	39968	-0.2755	NEUTRAL	NA	465	Too-Many
TCGA.G4.6317	5	51454	139140708	41129	-0.321	NEUTRAL	NA	505	Too-Many
TCGA.CK.5913	5	51454	143446497	42381	-0.0003	NEUTRAL	NA	599	Too-Many
TCGA.D5.6539	5	51454	144348934	42577	-0.0025	NEUTRAL	NA	601	Too-Many
TCGA.CM.6167	5	51454	145054725	42875	0.1225	NEUTRAL	NA	601	Too-Many
TCGA.A6.6648	5	51454	146536231	43411	-0.2851	NEUTRAL	NA	611	Too-Many
TCGA.AA.3527	5	51454	148689958	44224	-0.0076	NEUTRAL	NA	629	Too-Many
TCGA.DC.4745	5	51454	149000038	44325	-0.0535	NEUTRAL	NA	634	Too-Many
TCGA.AF.4110	5	51454	150387735	44790	0.0365	NEUTRAL	NA	656	Too-Many
TCGA.AA.3511	5	51454	151514170	45225	0.0546	NEUTRAL	NA	670	Too-Many
TCGA.AA.3852	5	51454	151514170	45353	0.0015	NEUTRAL	NA	670	Too-Many
TCGA.AA.A02O	5	51454	151514170	45302	-0.0047	NEUTRAL	NA	670	Too-Many
TCGA.AF.A56N	5	51454	152216809	45477	0	NEUTRAL	NA	671	Too-Many
TCGA.CI.6621	5	51454	154091903	46127	-0.0101	NEUTRAL	NA	677	Too-Many
TCGA.AF.A56L	5	51454	155576426	46618	0	NEUTRAL	NA	683	Too-Many
TCGA.D5.7000	5	51454	156288821	46795	-0.0158	NEUTRAL	NA	684	Too-Many
TCGA.AA.3664	5	51454	158826492	47922	-0.0108	NEUTRAL	NA	703	Too-Many
TCGA.AA.3947	5	51454	160870472	48625	-0.0159	NEUTRAL	NA	714	Too-Many
TCGA.D5.6920	5	51454	164386788	49574	0.0042	NEUTRAL	NA	721	Too-Many
TCGA.CM.5344	5	51454	164952361	49869	-0.1993	NEUTRAL	NA	721	Too-Many
TCGA.AG.3893	5	51454	166572042	49994	-0.0102	NEUTRAL	NA	721	Too-Many
TCGA.G4.6625	5	51454	170046443	52140	-0.0845	NEUTRAL	NA	734	Too-Many
TCGA.AA.3818	5	51454	173201916	53341	0.0122	NEUTRAL	NA	756	Too-Many
TCGA.AF.2693	5	51454	173201916	53301	0.0058	NEUTRAL	NA	756	Too-Many
TCGA.CL.4957	5	51454	173201916	53327	-0.0066	NEUTRAL	NA	756	Too-Many
TCGA.AG.4022	5	51454	173935991	53659	-0.009	NEUTRAL	NA	759	Too-Many
TCGA.D5.5538	5	51454	175291851	54196	0.0055	NEUTRAL	NA	764	Too-Many
TCGA.AA.3495	5	51454	175765355	54260	-0.0028	NEUTRAL	NA	767	Too-Many
TCGA.QG.A5YW	5	51454	175784598	53987	-0.0317	NEUTRAL	NA	768	Too-Many
TCGA.G4.6310	5	51454	176138246	54370	-0.0645	NEUTRAL	NA	779	Too-Many
TCGA.A6.6782	5	51454	177142080	54299	-0.0138	NEUTRAL	NA	802	Too-Many
TCGA.EI.6881	5	51454	180677678	55364	-0.0789	NEUTRAL	NA	848	Too-Many
TCGA.4N.A93T	5	51454	180692832	55484	0.0144	NEUTRAL	NA	849	Too-Many
TCGA.4T.AA8H	5	51454	180692832	55470	-0.002	NEUTRAL	NA	849	Too-Many
TCGA.5M.AAT6	5	51454	180692832	55475	-0.0003	NEUTRAL	NA	849	Too-Many
TCGA.5M.AATE	5	51454	180692832	55490	-0.1294	NEUTRAL	NA	849	Too-Many
TCGA.A6.2671	5	51454	180692832	55435	-0.2874	NEUTRAL	NA	849	Too-Many
TCGA.A6.2677	5	51454	180692832	50695	-0.0219	NEUTRAL	NA	849	Too-Many
TCGA.A6.2679	5	51454	180692832	55431	0.1751	NEUTRAL	NA	849	Too-Many
TCGA.A6.2680	5	51454	180692832	55418	-0.0001	NEUTRAL	NA	849	Too-Many
TCGA.A6.2682	5	51454	180692832	54499	-0.1088	NEUTRAL	NA	849	Too-Many
TCGA.A6.2684	5	51454	180692832	50680	0.0007	NEUTRAL	NA	849	Too-Many
TCGA.A6.2685	5	51454	180692832	55408	0.2311	NEUTRAL	NA	849	Too-Many
TCGA.A6.3809	5	51454	180692832	50690	0.0002	NEUTRAL	NA	849	Too-Many
TCGA.A6.5657	5	51454	180692832	55371	0.0103	NEUTRAL	NA	849	Too-Many
TCGA.A6.5660	5	51454	180692832	55260	-0.4778	NEUTRAL	NA	849	Too-Many
TCGA.A6.5664	5	51454	180692832	55351	0.0025	NEUTRAL	NA	849	Too-Many
TCGA.A6.5667	5	51454	180692832	55469	-0.0181	NEUTRAL	NA	849	Too-Many
TCGA.A6.6138	5	51454	180692832	55506	-1.00E-04	NEUTRAL	NA	849	Too-Many
TCGA.A6.6141	5	51454	180692832	55456	0.0088	NEUTRAL	NA	849	Too-Many
TCGA.A6.6142	5	51454	180692832	55497	-0.0764	NEUTRAL	NA	849	Too-Many
TCGA.A6.6649	5	51454	180692832	55495	-0.2461	NEUTRAL	NA	849	Too-Many
TCGA.A6.6650	5	51454	180692832	50636	0.3082	NEUTRAL	NA	849	Too-Many
TCGA.A6.6654	5	51454	180692832	55338	-0.116	NEUTRAL	NA	849	Too-Many
TCGA.A6.6780	5	51454	180692832	55358	-0.0042	NEUTRAL	NA	849	Too-Many
TCGA.A6.6781	5	51454	180692832	50579	0.0052	NEUTRAL	NA	849	Too-Many
TCGA.A6.A565	5	51454	180692832	55120	0.0011	NEUTRAL	NA	849	Too-Many
TCGA.A6.A566	5	51454	180692832	55042	0.0038	NEUTRAL	NA	849	Too-Many
TCGA.A6.A567	5	51454	180692832	55094	0.018	NEUTRAL	NA	849	Too-Many
TCGA.A6.A56B	5	51454	180692832	55160	-0.0457	NEUTRAL	NA	849	Too-Many
TCGA.AA.3489	5	51454	180692832	55324	-0.0015	NEUTRAL	NA	849	Too-Many
TCGA.AA.3510	5	51454	180692832	55453	0.0047	NEUTRAL	NA	849	Too-Many
TCGA.AA.3514	5	51454	180692832	55471	-0.0034	NEUTRAL	NA	849	Too-Many
TCGA.AA.3519	5	51454	180692832	55475	0.0161	NEUTRAL	NA	849	Too-Many
TCGA.AA.3526	5	51454	180692832	55468	0.0022	NEUTRAL	NA	849	Too-Many
TCGA.AA.3529	5	51454	180692832	55465	0.002	NEUTRAL	NA	849	Too-Many
TCGA.AA.3531	5	51454	180692832	55462	-0.0022	NEUTRAL	NA	849	Too-Many
TCGA.AA.3532	5	51454	180692832	55476	-0.0297	NEUTRAL	NA	849	Too-Many
TCGA.AA.3534	5	51454	180692832	55481	-0.0006	NEUTRAL	NA	849	Too-Many
TCGA.AA.3543	5	51454	180692832	55449	-0.0095	NEUTRAL	NA	849	Too-Many
TCGA.AA.3544	5	51454	180692832	55508	-0.015	NEUTRAL	NA	849	Too-Many
TCGA.AA.3548	5	51454	180692832	55503	0.0045	NEUTRAL	NA	849	Too-Many
TCGA.AA.3549	5	51454	180692832	55498	-0.03	NEUTRAL	NA	849	Too-Many
TCGA.AA.3555	5	51454	180692832	55503	-0.0066	NEUTRAL	NA	849	Too-Many
TCGA.AA.3558	5	51454	180692832	55481	-0.0106	NEUTRAL	NA	849	Too-Many
TCGA.AA.3660	5	51454	180692832	55483	0	NEUTRAL	NA	849	Too-Many
TCGA.AA.3662	5	51454	180692832	55485	-0.0447	NEUTRAL	NA	849	Too-Many
TCGA.AA.3663	5	51454	180692832	55373	-0.0032	NEUTRAL	NA	849	Too-Many
TCGA.AA.3673	5	51454	180692832	55517	-0.1548	NEUTRAL	NA	849	Too-Many
TCGA.AA.3675	5	51454	180692832	55509	-0.0175	NEUTRAL	NA	849	Too-Many
TCGA.AA.3679	5	51454	180692832	55503	-0.0497	NEUTRAL	NA	849	Too-Many
TCGA.AA.3693	5	51454	180692832	55517	-0.0294	NEUTRAL	NA	849	Too-Many
TCGA.AA.3696	5	51454	180692832	55508	-0.0101	NEUTRAL	NA	849	Too-Many
TCGA.AA.3710	5	51454	180692832	55464	-0.007	NEUTRAL	NA	849	Too-Many
TCGA.AA.3715	5	51454	180692832	55512	0.1578	NEUTRAL	NA	849	Too-Many
TCGA.AA.3812	5	51454	180692832	55520	-0.0161	NEUTRAL	NA	849	Too-Many
TCGA.AA.3814	5	51454	180692832	55516	-0.0104	NEUTRAL	NA	849	Too-Many
TCGA.AA.3819	5	51454	180692832	55515	-0.0014	NEUTRAL	NA	849	Too-Many
TCGA.AA.3821	5	51454	180692832	55392	-0.0076	NEUTRAL	NA	849	Too-Many
TCGA.AA.3831	5	51454	180692832	55428	-0.0021	NEUTRAL	NA	849	Too-Many
TCGA.AA.3833	5	51454	180692832	55519	0.0072	NEUTRAL	NA	849	Too-Many
TCGA.AA.3837	5	51454	180692832	55519	0.0007	NEUTRAL	NA	849	Too-Many
TCGA.AA.3841	5	51454	180692832	55520	-0.3862	NEUTRAL	NA	849	Too-Many
TCGA.AA.3845	5	51454	180692832	55408	-0.0152	NEUTRAL	NA	849	Too-Many
TCGA.AA.3846	5	51454	180692832	55440	-0.0208	NEUTRAL	NA	849	Too-Many
TCGA.AA.3851	5	51454	180692832	55432	-0.4483	NEUTRAL	NA	849	Too-Many
TCGA.AA.3855	5	51454	180692832	55414	0.0055	NEUTRAL	NA	849	Too-Many
TCGA.AA.3869	5	51454	180692832	55447	-0.0187	NEUTRAL	NA	849	Too-Many
TCGA.AA.3875	5	51454	180692832	55521	-0.0007	NEUTRAL	NA	849	Too-Many
TCGA.AA.3877	5	51454	180692832	55461	-0.0074	NEUTRAL	NA	849	Too-Many
TCGA.AA.3949	5	51454	180692832	55444	-0.0143	NEUTRAL	NA	849	Too-Many
TCGA.AA.3950	5	51454	180692832	55460	-0.0127	NEUTRAL	NA	849	Too-Many
TCGA.AA.3955	5	51454	180692832	55455	-0.0423	NEUTRAL	NA	849	Too-Many
TCGA.AA.3956	5	51454	180692832	55435	-0.0289	NEUTRAL	NA	849	Too-Many
TCGA.AA.3975	5	51454	180692832	55395	-0.0161	NEUTRAL	NA	849	Too-Many
TCGA.AA.3976	5	51454	180692832	55461	0.2381	NEUTRAL	NA	849	Too-Many
TCGA.AA.3979	5	51454	180692832	55317	0	NEUTRAL	NA	849	Too-Many
TCGA.AA.3984	5	51454	180692832	55420	-0.0039	NEUTRAL	NA	849	Too-Many
TCGA.AA.3989	5	51454	180692832	55471	0	NEUTRAL	NA	849	Too-Many
TCGA.AA.A01P	5	51454	180692832	55418	0.003	NEUTRAL	NA	849	Too-Many
TCGA.AA.A01R	5	51454	180692832	55467	-0.004	NEUTRAL	NA	849	Too-Many
TCGA.AA.A01V	5	51454	180692832	55453	0	NEUTRAL	NA	849	Too-Many
TCGA.AA.A01X	5	51454	180692832	55398	0.0023	NEUTRAL	NA	849	Too-Many
TCGA.AA.A022	5	51454	180692832	55406	0.0053	NEUTRAL	NA	849	Too-Many
TCGA.AA.A02Y	5	51454	180692832	55448	-0.0002	NEUTRAL	NA	849	Too-Many
TCGA.AA.A03F	5	51454	180692832	55457	0.0312	NEUTRAL	NA	849	Too-Many
TCGA.AA.A03J	5	51454	180692832	54301	0.2226	NEUTRAL	NA	849	Too-Many
TCGA.AD.5900	5	51454	180692832	55405	0.0146	NEUTRAL	NA	849	Too-Many
TCGA.AD.6548	5	51454	180692832	55322	-0.0065	NEUTRAL	NA	849	Too-Many
TCGA.AD.6888	5	51454	180692832	55417	0	NEUTRAL	NA	849	Too-Many
TCGA.AD.6889	5	51454	180692832	55406	0.0079	NEUTRAL	NA	849	Too-Many
TCGA.AD.6890	5	51454	180692832	55417	-0.0031	NEUTRAL	NA	849	Too-Many
TCGA.AD.6895	5	51454	180692832	55403	0.0096	NEUTRAL	NA	849	Too-Many
TCGA.AD.6899	5	51454	180692832	55318	0.094	NEUTRAL	NA	849	Too-Many
TCGA.AD.6963	5	51454	180692832	55416	-0.1752	NEUTRAL	NA	849	Too-Many
TCGA.AD.A5EJ	5	51454	180692832	55181	0	NEUTRAL	NA	849	Too-Many
TCGA.AF.2690	5	51454	180692832	55491	-0.1905	NEUTRAL	NA	849	Too-Many
TCGA.AF.2691	5	51454	180692832	55476	-0.1272	NEUTRAL	NA	849	Too-Many
TCGA.AF.6136	5	51454	180692832	55407	-0.1929	NEUTRAL	NA	849	Too-Many
TCGA.AF.6655	5	51454	180692832	55349	0.1862	NEUTRAL	NA	849	Too-Many
TCGA.AG.3574	5	51454	180692832	55500	-0.013	NEUTRAL	NA	849	Too-Many
TCGA.AG.3575	5	51454	180692832	55502	0.0018	NEUTRAL	NA	849	Too-Many
TCGA.AG.3580	5	51454	180692832	55492	-0.0058	NEUTRAL	NA	849	Too-Many
TCGA.AG.3581	5	51454	180692832	55487	0	NEUTRAL	NA	849	Too-Many
TCGA.AG.3583	5	51454	180692832	54068	0	NEUTRAL	NA	849	Too-Many
TCGA.AG.3584	5	51454	180692832	55485	0.0036	NEUTRAL	NA	849	Too-Many
TCGA.AG.3594	5	51454	180692832	55489	-0.007	NEUTRAL	NA	849	Too-Many
TCGA.AG.3599	5	51454	180692832	55441	-0.0093	NEUTRAL	NA	849	Too-Many
TCGA.AG.3602	5	51454	180692832	55260	-0.0003	NEUTRAL	NA	849	Too-Many
TCGA.AG.3725	5	51454	180692832	55424	-0.1477	NEUTRAL	NA	849	Too-Many
TCGA.AG.3727	5	51454	180692832	55521	-0.0164	NEUTRAL	NA	849	Too-Many
TCGA.AG.3878	5	51454	180692832	55517	-0.013	NEUTRAL	NA	849	Too-Many
TCGA.AG.3883	5	51454	180692832	55514	0.0417	NEUTRAL	NA	849	Too-Many
TCGA.AG.3887	5	51454	180692832	55247	-0.0104	NEUTRAL	NA	849	Too-Many
TCGA.AG.3892	5	51454	180692832	55307	-0.0041	NEUTRAL	NA	849	Too-Many
TCGA.AG.3894	5	51454	180692832	55307	-0.0083	NEUTRAL	NA	849	Too-Many
TCGA.AG.3896	5	51454	180692832	55329	-0.0207	NEUTRAL	NA	849	Too-Many
TCGA.AG.3901	5	51454	180692832	55328	0.0225	NEUTRAL	NA	849	Too-Many
TCGA.AG.3902	5	51454	180692832	55322	-0.0157	NEUTRAL	NA	849	Too-Many
TCGA.AG.4015	5	51454	180692832	55325	-0.4861	NEUTRAL	NA	849	Too-Many
TCGA.AH.6544	5	51454	180692832	55396	0.1259	NEUTRAL	NA	849	Too-Many
TCGA.AH.6547	5	51454	180692832	55410	0.0035	NEUTRAL	NA	849	Too-Many
TCGA.AH.6644	5	51454	180692832	55363	0.253	NEUTRAL	NA	849	Too-Many
TCGA.AH.6897	5	51454	180692832	55379	-0.0138	NEUTRAL	NA	849	Too-Many
TCGA.AU.6004	5	51454	180692832	55108	0.0102	NEUTRAL	NA	849	Too-Many
TCGA.AY.4070	5	51454	180692832	55223	-0.1505	NEUTRAL	NA	849	Too-Many
TCGA.AY.4071	5	51454	180692832	55215	0.0007	NEUTRAL	NA	849	Too-Many
TCGA.AY.6386	5	51454	180692832	55467	0.0044	NEUTRAL	NA	849	Too-Many
TCGA.AY.A69D	5	51454	180692832	55416	0.0063	NEUTRAL	NA	849	Too-Many
TCGA.AZ.4308	5	51454	180692832	55456	-0.0065	NEUTRAL	NA	849	Too-Many
TCGA.AZ.4315	5	51454	180692832	55446	0.004	NEUTRAL	NA	849	Too-Many
TCGA.AZ.4323	5	51454	180692832	55285	-0.072	NEUTRAL	NA	849	Too-Many
TCGA.AZ.4615	5	51454	180692832	55457	-0.0018	NEUTRAL	NA	849	Too-Many
TCGA.AZ.4616	5	51454	180692832	55338	0.008	NEUTRAL	NA	849	Too-Many
TCGA.AZ.5407	5	51454	180692832	55498	0.0081	NEUTRAL	NA	849	Too-Many
TCGA.AZ.6600	5	51454	180692832	55458	0	NEUTRAL	NA	849	Too-Many
TCGA.AZ.6605	5	51454	180692832	55298	-0.1493	NEUTRAL	NA	849	Too-Many
TCGA.AZ.6607	5	51454	180692832	55340	0	NEUTRAL	NA	849	Too-Many
TCGA.CA.5255	5	51454	180692832	55311	0	NEUTRAL	NA	849	Too-Many
TCGA.CA.5796	5	51454	180692832	55383	-0.0105	NEUTRAL	NA	849	Too-Many
TCGA.CA.6717	5	51454	180692832	55259	0.0212	NEUTRAL	NA	849	Too-Many
TCGA.CA.6718	5	51454	180692832	55305	-0.0024	NEUTRAL	NA	849	Too-Many
TCGA.CI.6619	5	51454	180692832	55391	-0.0113	NEUTRAL	NA	849	Too-Many
TCGA.CI.6620	5	51454	180692832	55367	-0.1955	NEUTRAL	NA	849	Too-Many
TCGA.CI.6622	5	51454	180692832	55376	0.0016	NEUTRAL	NA	849	Too-Many
TCGA.CI.6623	5	51454	180692832	55408	-0.1139	NEUTRAL	NA	849	Too-Many
TCGA.CI.6624	5	51454	180692832	55368	0	NEUTRAL	NA	849	Too-Many
TCGA.CK.4947	5	51454	180692832	55418	0.0065	NEUTRAL	NA	849	Too-Many
TCGA.CK.4950	5	51454	180692832	55003	-0.0045	NEUTRAL	NA	849	Too-Many
TCGA.CK.4951	5	51454	180692832	55247	-0.0065	NEUTRAL	NA	849	Too-Many
TCGA.CK.5915	5	51454	180692832	55386	-0.254	NEUTRAL	NA	849	Too-Many
TCGA.CK.5916	5	51454	180692832	55376	0.0009	NEUTRAL	NA	849	Too-Many
TCGA.CK.6746	5	51454	180692832	55340	0	NEUTRAL	NA	849	Too-Many
TCGA.CK.6747	5	51454	180692832	55271	0.0074	NEUTRAL	NA	849	Too-Many
TCGA.CK.6748	5	51454	180692832	55393	0	NEUTRAL	NA	849	Too-Many
TCGA.CL.5917	5	51454	180692832	55353	-0.0053	NEUTRAL	NA	849	Too-Many
TCGA.CM.4743	5	51454	180692832	55475	0.0128	NEUTRAL	NA	849	Too-Many
TCGA.CM.5349	5	51454	180692832	55478	0.0012	NEUTRAL	NA	849	Too-Many
TCGA.CM.5860	5	51454	180692832	55392	0.2478	NEUTRAL	NA	849	Too-Many
TCGA.CM.5862	5	51454	180692832	55391	-0.1834	NEUTRAL	NA	849	Too-Many
TCGA.CM.5863	5	51454	180692832	55391	-0.0618	NEUTRAL	NA	849	Too-Many
TCGA.CM.5868	5	51454	180692832	55412	-0.0229	NEUTRAL	NA	849	Too-Many
TCGA.CM.6162	5	51454	180692832	55257	0.0116	NEUTRAL	NA	849	Too-Many
TCGA.CM.6166	5	51454	180692832	55482	-0.0142	NEUTRAL	NA	849	Too-Many
TCGA.CM.6168	5	51454	180692832	55462	0.0003	NEUTRAL	NA	849	Too-Many
TCGA.CM.6171	5	51454	180692832	55483	0	NEUTRAL	NA	849	Too-Many
TCGA.CM.6674	5	51454	180692832	55345	0.0033	NEUTRAL	NA	849	Too-Many
TCGA.CM.6676	5	51454	180692832	55293	0.0705	NEUTRAL	NA	849	Too-Many
TCGA.CM.6678	5	51454	180692832	55359	0.2487	NEUTRAL	NA	849	Too-Many
TCGA.CM.6679	5	51454	180692832	55284	-0.04185	NEUTRAL	NA	849	Too-Many
TCGA.CM.6680	5	51454	180692832	55383	-0.0647	NEUTRAL	NA	849	Too-Many
TCGA.D5.5537	5	51454	180692832	55360	0.0029	NEUTRAL	NA	849	Too-Many
TCGA.D5.5540	5	51454	180692832	55483	-0.0254	NEUTRAL	NA	849	Too-Many
TCGA.D5.5541	5	51454	180692832	55474	-0.0158	NEUTRAL	NA	849	Too-Many
TCGA.D5.6529	5	51454	180692832	55494	0.0181	NEUTRAL	NA	849	Too-Many
TCGA.D5.6532	5	51454	180692832	55445	-0.0016	NEUTRAL	NA	849	Too-Many
TCGA.D5.6534	5	51454	180692832	55348	0	NEUTRAL	NA	849	Too-Many
TCGA.D5.6536	5	51454	180692832	55484	-0.0549	NEUTRAL	NA	849	Too-Many
TCGA.D5.6537	5	51454	180692832	55143	0.0342	NEUTRAL	NA	849	Too-Many
TCGA.D5.6540	5	51454	180692832	55371	-0.0101	NEUTRAL	NA	849	Too-Many
TCGA.D5.6541	5	51454	180692832	55499	0.0028	NEUTRAL	NA	849	Too-Many
TCGA.D5.6898	5	51454	180692832	55379	0	NEUTRAL	NA	849	Too-Many
TCGA.D5.6926	5	51454	180692832	55383	-0.4119	NEUTRAL	NA	849	Too-Many
TCGA.D5.6928	5	51454	180692832	55379	0	NEUTRAL	NA	849	Too-Many
TCGA.D5.6930	5	51454	180692832	55361	0	NEUTRAL	NA	849	Too-Many
TCGA.DC.4749	5	51454	180692832	55501	-0.0117	NEUTRAL	NA	849	Too-Many
TCGA.DC.5337	5	51454	180692832	55290	0	NEUTRAL	NA	849	Too-Many
TCGA.DC.6154	5	51454	180692832	55370	-0.023	NEUTRAL	NA	849	Too-Many
TCGA.DC.6681	5	51454	180692832	55393	-0.0008	NEUTRAL	NA	849	Too-Many
TCGA.DM.A0X9	5	51454	180692832	55468	-0.0035	NEUTRAL	NA	849	Too-Many
TCGA.DM.A0XF	5	51454	180692832	55471	0.0041	NEUTRAL	NA	849	Too-Many
TCGA.DM.A1D7	5	51454	180692832	55483	0.0577	NEUTRAL	NA	849	Too-Many
TCGA.DM.A1D8	5	51454	180692832	55401	0.2235	NEUTRAL	NA	849	Too-Many
TCGA.DM.A28C	5	51454	180692832	55402	0	NEUTRAL	NA	849	Too-Many
TCGA.DM.A28E	5	51454	180692832	55350	-0.0038	NEUTRAL	NA	849	Too-Many
TCGA.DM.A28F	5	51454	180692832	55360	0	NEUTRAL	NA	849	Too-Many
TCGA.DT.5265	5	51454	180692832	55407	-0.0099	NEUTRAL	NA	849	Too-Many
TCGA.DY.A0XA	5	51454	180692832	55420	-0.27	NEUTRAL	NA	849	Too-Many
TCGA.DY.A1DF	5	51454	180692832	55476	-0.0188	NEUTRAL	NA	849	Too-Many
TCGA.EF.5830	5	51454	180692832	55378	-0.0356	NEUTRAL	NA	849	Too-Many
TCGA.EI.6506	5	51454	180692832	55385	-0.1761	NEUTRAL	NA	849	Too-Many
TCGA.EI.6511	5	51454	180692832	55472	-0.0127	NEUTRAL	NA	849	Too-Many
TCGA.EI.6512	5	51454	180692832	55484	-0.0011	NEUTRAL	NA	849	Too-Many
TCGA.EI.6882	5	51454	180692832	55379	-0.0024	NEUTRAL	NA	849	Too-Many
TCGA.EI.6884	5	51454	180692832	55328	-0.0015	NEUTRAL	NA	849	Too-Many
TCGA.EI.6917	5	51454	180692832	55338	0.0069	NEUTRAL	NA	849	Too-Many
TCGA.F4.6463	5	51454	180692832	55480	0.0017	NEUTRAL	NA	849	Too-Many
TCGA.F4.6569	5	51454	180692832	55503	0.0028	NEUTRAL	NA	849	Too-Many
TCGA.F4.6570	5	51454	180692832	55501	0	NEUTRAL	NA	849	Too-Many
TCGA.F4.6703	5	51454	180692832	55379	-0.0285	NEUTRAL	NA	849	Too-Many
TCGA.F4.6805	5	51454	180692832	55387	-0.0061	NEUTRAL	NA	849	Too-Many
TCGA.F4.6806	5	51454	180692832	55242	0.0032	NEUTRAL	NA	849	Too-Many
TCGA.F4.6809	5	51454	180692832	55384	0.0029	NEUTRAL	NA	849	Too-Many
TCGA.F4.6854	5	51454	180692832	55364	-0.0059	NEUTRAL	NA	849	Too-Many
TCGA.F4.6855	5	51454	180692832	55341	0.0845	NEUTRAL	NA	849	Too-Many
TCGA.F4.6856	5	51454	180692832	55386	-0.0028	NEUTRAL	NA	849	Too-Many
TCGA.F5.6571	5	51454	180692832	55397	0.0385	NEUTRAL	NA	849	Too-Many
TCGA.F5.6810	5	51454	180692832	55407	-0.0336	NEUTRAL	NA	849	Too-Many
TCGA.F5.6812	5	51454	180692832	55382	-0.0667	NEUTRAL	NA	849	Too-Many
TCGA.F5.6813	5	51454	180692832	55405	-0.0158	NEUTRAL	NA	849	Too-Many
TCGA.F5.6814	5	51454	180692832	55374	-0.024	NEUTRAL	NA	849	Too-Many
TCGA.F5.6861	5	51454	180692832	55342	-0.0052	NEUTRAL	NA	849	Too-Many
TCGA.G4.6293	5	51454	180692832	55455	0.0106	NEUTRAL	NA	849	Too-Many
TCGA.G4.6294	5	51454	180692832	55503	0.0056	NEUTRAL	NA	849	Too-Many
TCGA.G4.6295	5	51454	180692832	55503	-0.3935	NEUTRAL	NA	849	Too-Many
TCGA.G4.6297	5	51454	180692832	55491	-0.027	NEUTRAL	NA	849	Too-Many
TCGA.G4.6299	5	51454	180692832	55505	-0.0284	NEUTRAL	NA	849	Too-Many
TCGA.G4.6302	5	51454	180692832	55490	0.003	NEUTRAL	NA	849	Too-Many
TCGA.G4.6304	5	51454	180692832	55381	0.0073	NEUTRAL	NA	849	Too-Many
TCGA.G4.6306	5	51454	180692832	55471	0	NEUTRAL	NA	849	Too-Many
TCGA.G4.6309	5	51454	180692832	55380	-0.005	NEUTRAL	NA	849	Too-Many
TCGA.G4.6311	5	51454	180692832	55490	-0.0329	NEUTRAL	NA	849	Too-Many
TCGA.G4.6314	5	51454	180692832	55500	-0.0041	NEUTRAL	NA	849	Too-Many
TCGA.G4.6320	5	51454	180692832	55504	-0.0053	NEUTRAL	NA	849	Too-Many
TCGA.G4.6321	5	51454	180692832	55495	-0.0029	NEUTRAL	NA	849	Too-Many
TCGA.G4.6586	5	51454	180692832	55504	0.0033	NEUTRAL	NA	849	Too-Many
TCGA.G4.6588	5	51454	180692832	55502	0.0079	NEUTRAL	NA	849	Too-Many
TCGA.G4.6628	5	51454	180692832	55358	0.002	NEUTRAL	NA	849	Too-Many
TCGA.G5.6233	5	51454	180692832	55498	-0.0582	NEUTRAL	NA	849	Too-Many
TCGA.G5.6572	5	51454	180692832	55387	0.0003	NEUTRAL	NA	849	Too-Many
TCGA.NH.A50T	5	51454	180692832	55143	-0.0695	NEUTRAL	NA	849	Too-Many
TCGA.NH.A50V	5	51454	180692832	55151	0	NEUTRAL	NA	849	Too-Many
TCGA.NH.A5IV	5	51454	180692832	55352	-0.0058	NEUTRAL	NA	849	Too-Many
TCGA.NH.A6GB	5	51454	180692832	55464	0.01	NEUTRAL	NA	849	Too-Many
TCGA.NH.A8F7	5	51454	180692832	55281	-0.0134	NEUTRAL	NA	849	Too-Many
TCGA.QG.A5Z2	5	51454	180692832	55064	0.0063	NEUTRAL	NA	849	Too-Many
TCGA.QL.A97D	5	51454	180692832	55483	-0.1383	NEUTRAL	NA	849	Too-Many
TCGA.SS.A7HO	5	51454	180692832	55468	0	NEUTRAL	NA	849	Too-Many
TCGA.T9.A92H	5	51454	180692832	55469	-0.0058	NEUTRAL	NA	849	Too-Many
TCGA.WS.AB45	5	51454	180692832	55464	-0.0014	NEUTRAL	NA	849	Too-Many
TCGA.D5.6931	5	106818	157889837	47458	0.0995	NEUTRAL	NA	699	Too-Many
TCGA.AF.A56K	5	112711	25419801	9292	0.2273	NEUTRAL	NA	63	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AZ.6606	5	125430	46328444	15243	-0.0239	NEUTRAL	NA	136	Too-Many
TCGA.A6.3810.01A	5	140393	143111	2	0.044	NEUTRAL	NA	1	PLEKHG4B
TCGA.AA.A010.01A	5	140393	272779	35	-0.0898	NEUTRAL	NA	5	"CCDC127,LRRC14B,PDCD6,PLEKHG4B,SDHA"
TCGA.AA.A00F.01A	5	140393	1094237	109	0.0327	NEUTRAL	NA	15	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC9A3,TPPP,TRIP13,ZDHHC11"
TCGA.AA.A00L.01A	5	140393	1882639	200	-0.3338	NEUTRAL	NA	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.DM.A28M.01A	5	140393	13902136	562	0.209	NEUTRAL	NA	49	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3509.01A	5	140393	13911448	562	-0.104	NEUTRAL	NA	49	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AZ.4684.01A	5	140393	13911448	562	-0.233	NEUTRAL	NA	49	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.CM.6165.01A	5	140393	68847305	2503	0.0675	NEUTRAL	NA	213	Too-Many
TCGA.CM.4744.01A	5	140393	70308128	2523	-0.0671	NEUTRAL	NA	220	Too-Many
TCGA.CM.4750.01A	5	140393	85915158	3322	-0.1414	NEUTRAL	NA	297	Too-Many
TCGA.CK.4948.01B	5	140393	110096857	3990	0.0076	NEUTRAL	NA	347	Too-Many
TCGA.AA.A00A.01A	5	140393	180686963	6373	-0.4304	NEUTRAL	NA	849	Too-Many
TCGA.AY.A54L.01A	5	140393	180686963	8191	-0.1018	NEUTRAL	NA	849	Too-Many
TCGA.DM.A282.01A	5	140393	180686963	8190	-0.007	NEUTRAL	NA	849	Too-Many
TCGA.AA.A02K.01A	5	140404	94865763	3597	0.0497	NEUTRAL	NA	315	Too-Many
TCGA.AG.A015.01A	5	143111	154951	4	-0.3633	NEUTRAL	NA	1	PLEKHG4B
TCGA.AA.3861.01A	5	143111	205371	18	-0.1232	NEUTRAL	NA	3	"CCDC127,LRRC14B,PLEKHG4B"
TCGA.AG.A01L.01A	5	143111	236496	26	0.0867	NEUTRAL	NA	4	"CCDC127,LRRC14B,PLEKHG4B,SDHA"
TCGA.AG.3906.01A	5	143111	304213	33	-0.3027	NEUTRAL	NA	5	"CCDC127,LRRC14B,PDCD6,PLEKHG4B,SDHA"
TCGA.AG.A016.01A	5	143111	413447	38	-0.2858	NEUTRAL	NA	6	"AHRR,CCDC127,LRRC14B,PDCD6,PLEKHG4B,SDHA"
TCGA.AG.A011.01A	5	143111	476095	52	0.1253	NEUTRAL	NA	8	"AHRR,CCDC127,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3"
TCGA.AA.A01F.01A	5	143111	801159	56	0.1637	NEUTRAL	NA	11	"AHRR,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP,ZDHHC11"
TCGA.AG.3909.01A	5	143111	801159	79	-0.3694	NEUTRAL	NA	11	"AHRR,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP,ZDHHC11"
TCGA.AG.3891.01A	5	143111	917074	117	-0.1087	NEUTRAL	NA	13	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP,TRIP13,ZDHHC11"
TCGA.AA.A00K.01A	5	143111	1406255	152	-0.095	NEUTRAL	NA	20	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.3611.01A	5	143111	1441422	176	-0.4278	NEUTRAL	NA	20	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.A02E.01A	5	143111	1802364	140	-0.2201	NEUTRAL	NA	23	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.A008.01A	5	143111	1815939	185	0.2951	NEUTRAL	NA	23	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.4009.01A	5	143111	1878076	208	-0.4089	NEUTRAL	NA	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.A00Y.01A	5	143111	1878076	172	0.1286	NEUTRAL	NA	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.A00C.01A	5	143111	2755058	186	0.1826	NEUTRAL	NA	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.A00Q.01A	5	143111	6372564	211	-0.2739	NEUTRAL	NA	30	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.A00D.01A	5	143111	6749618	227	-0.1388	NEUTRAL	NA	34	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.A01K.01A	5	143111	7875324	250	-0.2323	NEUTRAL	NA	38	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.A029.01A	5	143111	10250401	297	0.1069	NEUTRAL	NA	42	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AG.A01J.01A	5	143111	10992611	353	-0.2083	NEUTRAL	NA	48	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AG.A01N.01A	5	143111	10992611	372	-0.1083	NEUTRAL	NA	48	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.A01C.01A	5	143111	11018027	375	-0.0676	NEUTRAL	NA	48	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.A02H.01A	5	143111	11098665	342	-0.0692	NEUTRAL	NA	48	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.A02J.01A	5	143111	14359424	421	-0.1556	NEUTRAL	NA	50	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.A017.01A	5	143111	38511855	1163	-0.0591	NEUTRAL	NA	104	Too-Many
TCGA.AA.A01D.01A	5	143111	44310480	1444	0.146	NEUTRAL	NA	134	Too-Many
TCGA.AG.A02G.01A	5	143111	45695720	1513	0.2444	NEUTRAL	NA	136	Too-Many
TCGA.AA.3967.01A	5	143111	66462278	2233	-0.3208	NEUTRAL	NA	200	Too-Many
TCGA.AA.A024.01A	5	143111	68599614	2287	0.0039	NEUTRAL	NA	208	Too-Many
TCGA.AF.3914.01A	5	143111	70810722	2389	0.1335	NEUTRAL	NA	222	Too-Many
TCGA.AA.A02F.01A	5	143111	79366812	2769	0.0874	NEUTRAL	NA	275	Too-Many
TCGA.AG.A014.01A	5	143111	122949998	4084	-0.1866	NEUTRAL	NA	393	Too-Many
TCGA.AA.3980.01A	5	143111	133295158	4902	-0.0917	NEUTRAL	NA	442	Too-Many
TCGA.AA.A02R.01A	5	143111	170819663	6758	-0.1094	NEUTRAL	NA	738	Too-Many
TCGA.AA.A004.01A	5	143111	180686963	7323	-0.0899	NEUTRAL	NA	849	Too-Many
TCGA.AA.A00O.01A	5	143111	180686963	7411	-0.4628	NEUTRAL	NA	849	Too-Many
TCGA.AA.A01I.01A	5	143111	180686963	7488	-0.139	NEUTRAL	NA	849	Too-Many
TCGA.AG.A00H.01A	5	143111	180686963	7507	0.071	NEUTRAL	NA	849	Too-Many
TCGA.AG.A025.01A	5	143111	180686963	7602	-0.0535	NEUTRAL	NA	849	Too-Many
TCGA.AA.3862.01A	5	144897	205371	17	0.3667	NEUTRAL	NA	3	"CCDC127,LRRC14B,PLEKHG4B"
TCGA.AA.3930.01A	5	144897	908451	116	-0.1243	NEUTRAL	NA	13	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP,TRIP13,ZDHHC11"
TCGA.AA.3815.01A	5	144897	1293466	165	-0.106	NEUTRAL	NA	18	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.A6.3810.01A	5	144897	9050449	407	-0.4082	NEUTRAL	NA	39	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3939.01A	5	144897	52096182	1704	0.0541	NEUTRAL	NA	141	Too-Many
TCGA.AA.A00J.01A	5	144897	180686963	6443	-0.0113	NEUTRAL	NA	849	Too-Many
TCGA.AG.A015.01A	5	155410	236496	22	0.2268	NEUTRAL	NA	4	"CCDC127,LRRC14B,PLEKHG4B,SDHA"
TCGA.AA.A01Q.01A	5	169403	644366	57	-0.3733	NEUTRAL	NA	9	"AHRR,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3"
TCGA.F5.6811.01A	5	193393	26926243	759	0.263	NEUTRAL	NA	63	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.CK.4952.01A	5	193393	180619569	8186	-0.1446	NEUTRAL	NA	844	Too-Many
TCGA.DC.6160.01A	5	193393	180619569	8186	0.0581	NEUTRAL	NA	844	Too-Many
TCGA.AG.A036.01A	5	193404	180620272	8169	-0.1774	NEUTRAL	NA	844	Too-Many
TCGA.AG.A01W.01A	5	196122	528630	63	-0.1457	NEUTRAL	NA	6	"AHRR,CCDC127,EXOC3,PDCD6,SDHA,SLC9A3"
TCGA.CK.5914.01A	5	225483	251404	10	0.1042	NEUTRAL	NA	1	SDHA
TCGA.AG.A015.01A	5	272779	423928	8	-0.0384	NEUTRAL	NA	2	"AHRR,PDCD6"
TCGA.AG.3906.01A	5	306676	624539	28	0.2687	NEUTRAL	NA	5	"AHRR,CEP72,EXOC3,PDCD6,SLC9A3"
TCGA.AA.3862.01A	5	306676	11732201	430	-0.0884	NEUTRAL	NA	44	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,ROPN1L,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3861.01A	5	311370	11732201	408	-0.3631	NEUTRAL	NA	44	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,ROPN1L,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3666	5	408068	13214066	5834	0.3328	NEUTRAL	NA	43	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,ROPN1L,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AG.A016.01A	5	422807	1880802	128	0.1517	NEUTRAL	NA	19	"AHRR,BRD9,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,MRPL36,NDUFS6,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.A01W.01A	5	544898	1335518	113	-0.0284	NEUTRAL	NA	11	"BRD9,CEP72,CLPTM1L,NKD2,SLC12A7,SLC6A18,SLC6A19,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.A6.5659	5	560475	51570652	14253	0.0223	NEUTRAL	NA	131	Too-Many
TCGA.AG.A011.01A	5	619058	32048598	657	0.0327	NEUTRAL	NA	60	"ADAMTS16,ADCY2,ANKH,ANKRD33B,BASP1,BRD9,C5orf22,C5orf38,C5orf49,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,DROSHA,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDZD2,PRDM9,ROPN1L,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.AG.3906.01A	5	633837	908050	41	-0.1841	NEUTRAL	NA	5	"BRD9,CEP72,TPPP,TRIP13,ZDHHC11"
TCGA.AG.3909.01A	5	843675	1815939	116	-0.4703	NEUTRAL	NA	13	"BRD9,CLPTM1L,LPCAT1,MRPL36,NDUFS6,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC6A3,TERT,TRIP13,ZDHHC11"
TCGA.AZ.5403	5	863796	946679	14	0.1599	NEUTRAL	NA	2	"BRD9,TRIP13"
TCGA.EI.6885	5	863796	105565787	30300	-0.3257	NEUTRAL	NA	329	Too-Many
TCGA.AG.A032.01A	5	876174	23509979	520	0.2005	NEUTRAL	NA	51	"ADAMTS16,ADCY2,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCT5,CDH12,CDH18,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PRDM9,ROPN1L,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SRD5A1,TAS2R1,TERT,TRIO,TRIP13,UBE2QL1,ZNF622"
TCGA.AG.3612	5	1055878	38596467	13325	-0.0772	NEUTRAL	NA	90	"ADAMTS12,ADAMTS16,ADCY2,AGXT2,AMACR,ANKH,ANKRD33B,BASP1,BRIX1,C1QTNF3,C5orf22,C5orf38,C5orf42,C5orf49,CAPSL,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,DNAJC21,DROSHA,EGFLAM,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GDNF,GDNF-AS1,GOLPH3,ICE1,IL7R,IRX1,IRX2,IRX4,LIFR,LMBRD2,LPCAT1,MARCH11,MARCH6,MED10,MRPL36,MTMR12,MTRR,MYO10,NADK2,NDUFS6,NIPBL,NPR3,NSUN2,NUP155,OTULIN,PAPD7,PDZD2,PRDM9,PRLR,RAD1,RAI14,RANBP3L,ROPN1L,RXFP3,SEMA5A,SKP2,SLC12A7,SLC1A3,SLC45A2,SLC6A18,SLC6A19,SLC6A3,SPEF2,SRD5A1,SUB1,TARS,TAS2R1,TERT,TRIO,TTC23L,UBE2QL1,UGT3A1,UGT3A2,WDR70,ZFR,ZNF622"
TCGA.AA.3930.01A	5	1208829	1243627	19	0.1235	NEUTRAL	NA	2	"SLC6A18,SLC6A19"
TCGA.AG.3906.01A	5	1212400	1293466	25	0.0159	NEUTRAL	NA	3	"SLC6A18,SLC6A19,TERT"
TCGA.AG.3891.01A	5	1216625	1264482	21	0.0954	NEUTRAL	NA	3	"SLC6A18,SLC6A19,TERT"
TCGA.AA.3556	5	1243426	76945405	23205	0.0167	NEUTRAL	NA	245	Too-Many
TCGA.AA.3930.01A	5	1244282	1320679	20	-0.4674	NEUTRAL	NA	3	"CLPTM1L,SLC6A18,TERT"
TCGA.AG.3891.01A	5	1334365	1394763	6	0.0139	NEUTRAL	NA	2	"CLPTM1L,SLC6A3"
TCGA.AG.3906.01A	5	1335141	14465604	370	-0.0802	NEUTRAL	NA	32	"ADAMTS16,ADCY2,ANKRD33B,C5orf38,C5orf49,CCT5,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NSUN2,PAPD7,ROPN1L,SEMA5A,SLC6A3,SRD5A1,TAS2R1,TRIO,UBE2QL1"
TCGA.AA.3815.01A	5	1341754	94417060	3319	-0.0569	NEUTRAL	NA	295	Too-Many
TCGA.AA.3930.01A	5	1344414	5187778	52	-0.3398	NEUTRAL	NA	10	"ADAMTS16,C5orf38,CLPTM1L,IRX1,IRX2,IRX4,LPCAT1,MRPL36,NDUFS6,SLC6A3"
TCGA.AM.5820	5	1348797	1377562	16	0.0066	NEUTRAL	NA	0	None
TCGA.AG.A015.01A	5	1394763	36251378	869	0.2904	NEUTRAL	NA	76	"ADAMTS12,ADAMTS16,ADCY2,AGXT2,AMACR,ANKH,ANKRD33B,BASP1,BRIX1,C1QTNF3,C5orf22,C5orf38,C5orf49,CAPSL,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CMBL,CTNND2,DAP,DNAH5,DNAJC21,DROSHA,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GOLPH3,ICE1,IL7R,IRX1,IRX2,IRX4,LMBRD2,LPCAT1,MARCH11,MARCH6,MED10,MRPL36,MTMR12,MTRR,MYO10,NADK2,NDUFS6,NPR3,NSUN2,OTULIN,PAPD7,PDZD2,PRDM9,PRLR,RAD1,RAI14,RANBP3L,ROPN1L,RXFP3,SEMA5A,SKP2,SLC45A2,SLC6A3,SPEF2,SRD5A1,SUB1,TARS,TAS2R1,TRIO,TTC23L,UBE2QL1,UGT3A1,UGT3A2,ZFR,ZNF622"
TCGA.AG.A01W.01A	5	1397430	1474943	12	0.3169	NEUTRAL	NA	2	"LPCAT1,SLC6A3"
TCGA.AG.A01L.01A	5	1409809	111754591	3621	0.1141	NEUTRAL	NA	334	Too-Many
TCGA.AA.A00K.01A	5	1416164	82834684	2379	-0.4048	NEUTRAL	NA	275	Too-Many
TCGA.AA.A01F.01A	5	1432580	1483485	12	0.0534	NEUTRAL	NA	2	"LPCAT1,SLC6A3"
TCGA.AG.3891.01A	5	1432580	14465604	364	-0.1906	NEUTRAL	NA	31	"ADAMTS16,ADCY2,ANKRD33B,C5orf38,C5orf49,CCT5,CMBL,CTNND2,DAP,DNAH5,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NSUN2,PAPD7,ROPN1L,SEMA5A,SLC6A3,SRD5A1,TAS2R1,TRIO,UBE2QL1"
TCGA.AA.A01Q.01A	5	1441422	1477472	8	-0.3588	NEUTRAL	NA	2	"LPCAT1,SLC6A3"
TCGA.AG.A01W.01A	5	1485543	2800609	25	-0.3725	NEUTRAL	NA	6	"C5orf38,IRX2,IRX4,LPCAT1,MRPL36,NDUFS6"
TCGA.AA.3695	5	1511221	101237808	29232	0	NEUTRAL	NA	313	Too-Many
TCGA.DC.6157	5	1639900	180692832	54690	-0.1828	NEUTRAL	NA	828	Too-Many
TCGA.AM.5820	5	1671277	1720230	32	-0.0504	NEUTRAL	NA	0	None
TCGA.G4.6323	5	1783236	19148282	7479	-0.0068	NEUTRAL	NA	38	"ADAMTS16,ADCY2,ANKH,ANKRD33B,BASP1,C5orf38,C5orf49,CCT5,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NSUN2,OTULIN,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,TRIO,UBE2QL1,ZNF622"
TCGA.AZ.5403	5	1800857	52636895	15716	0.2178	NEUTRAL	NA	121	Too-Many
TCGA.AA.A02E.01A	5	1814416	10450047	200	0.3404	NEUTRAL	NA	23	"ADAMTS16,ADCY2,C5orf38,C5orf49,CCT5,CMBL,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,MARCH6,MED10,MTRR,NDUFS6,NSUN2,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,UBE2QL1"
TCGA.AG.3909.01A	5	1878076	5476044	47	0.0878	NEUTRAL	NA	6	"ADAMTS16,C5orf38,ICE1,IRX1,IRX2,IRX4"
TCGA.AG.A008.01A	5	1878076	6604219	58	-0.008	NEUTRAL	NA	9	"ADAMTS16,C5orf38,ICE1,IRX1,IRX2,IRX4,MED10,NSUN2,UBE2QL1"
TCGA.AG.3605.01A	5	1878076	140167584	90	-0.2161	NEUTRAL	NA	506	Too-Many
TCGA.CK.5914.01A	5	1879589	6337207	57	-0.2811	NEUTRAL	NA	6	"ADAMTS16,C5orf38,ICE1,IRX1,IRX2,IRX4"
TCGA.AA.A01Q.01A	5	1879589	6752934	59	-0.2227	NEUTRAL	NA	11	"ADAMTS16,C5orf38,ICE1,IRX1,IRX2,IRX4,MED10,NSUN2,PAPD7,SRD5A1,UBE2QL1"
TCGA.AA.A00F.01A	5	1881903	2755058	8	0.2694	NEUTRAL	NA	3	"C5orf38,IRX2,IRX4"
TCGA.AA.A01F.01A	5	1881903	93300099	2458	0.0993	NEUTRAL	NA	287	Too-Many
TCGA.AM.5820	5	1908524	25649216	8945	0.0174	NEUTRAL	NA	39	"ADAMTS16,ADCY2,ANKH,ANKRD33B,BASP1,C5orf38,C5orf49,CCT5,CDH10,CDH12,CDH18,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,MARCH11,MARCH6,MED10,MTRR,MYO10,NSUN2,OTULIN,PAPD7,PRDM9,ROPN1L,SEMA5A,SRD5A1,TAS2R1,TRIO,UBE2QL1,ZNF622"
TCGA.AA.3811	5	2319963	13963004	5589	-0.437	NEUTRAL	NA	25	"ADAMTS16,ADCY2,ANKRD33B,C5orf38,C5orf49,CCT5,CMBL,CTNND2,DAP,DNAH5,FAM173B,FASTKD3,ICE1,IRX1,IRX2,MARCH6,MED10,MTRR,NSUN2,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,UBE2QL1"
TCGA.A6.4105	5	2353800	58810365	17713	-0.1224	NEUTRAL	NA	149	Too-Many
TCGA.AA.3994	5	2353800	81773914	24201	-0.0003	NEUTRAL	NA	267	Too-Many
TCGA.A6.5661	5	2462357	11735133	4848	-0.3523	NEUTRAL	NA	24	"ADAMTS16,ADCY2,ANKRD33B,C5orf38,C5orf49,CCT5,CMBL,CTNND2,DAP,FAM173B,FASTKD3,ICE1,IRX1,IRX2,MARCH6,MED10,MTRR,NSUN2,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,UBE2QL1"
TCGA.AG.4008	5	2491675	55598423	16232	0.0787	NEUTRAL	NA	139	Too-Many
TCGA.AG.A016.01A	5	2747617	180686963	7377	-0.1467	NEUTRAL	NA	825	Too-Many
TCGA.AG.3890	5	3268364	3496635	119	-0.4305	NEUTRAL	NA	0	None
TCGA.5M.AAT5	5	3269937	25791260	8155	-0.0161	NEUTRAL	NA	37	"ADAMTS16,ADCY2,ANKH,ANKRD33B,BASP1,C5orf49,CCT5,CDH10,CDH12,CDH18,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,MARCH11,MARCH6,MED10,MTRR,MYO10,NSUN2,OTULIN,PAPD7,PRDM9,ROPN1L,SEMA5A,SRD5A1,TAS2R1,TRIO,UBE2QL1,ZNF622"
TCGA.DM.A1HB	5	3269937	55935414	15724	-0.0297	NEUTRAL	NA	138	Too-Many
TCGA.QG.A5YV	5	3274083	180692832	53803	-0.3618	NEUTRAL	NA	823	Too-Many
TCGA.AA.3941	5	3381166	3462895	40	0.3666	NEUTRAL	NA	0	None
TCGA.AA.3941	5	3485120	3552144	41	0.3316	NEUTRAL	NA	0	None
TCGA.AG.3890	5	3501505	12538108	4367	0.1946	NEUTRAL	NA	22	"ADAMTS16,ADCY2,ANKRD33B,C5orf49,CCT5,CMBL,CTNND2,DAP,FAM173B,FASTKD3,ICE1,IRX1,MARCH6,MED10,MTRR,NSUN2,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,UBE2QL1"
TCGA.AA.3850	5	3558537	3696271	82	0.34255	NEUTRAL	NA	1	IRX1
TCGA.AA.3941	5	3562483	3700167	82	0.3466	NEUTRAL	NA	1	IRX1
TCGA.AA.3982	5	3562483	3700167	81	0.1663	NEUTRAL	NA	1	IRX1
TCGA.AA.3844	5	3562483	8539524	2525	0.3481	NEUTRAL	NA	12	"ADAMTS16,ADCY2,C5orf49,FASTKD3,ICE1,IRX1,MED10,MTRR,NSUN2,PAPD7,SRD5A1,UBE2QL1"
TCGA.EI.6883	5	3590083	3795613	105	0.2591	NEUTRAL	NA	1	IRX1
TCGA.AG.A00C.01A	5	3599312	6378423	45	-0.1321	NEUTRAL	NA	4	"ADAMTS16,ICE1,IRX1,MED10"
TCGA.AA.A00F.01A	5	3599312	6752934	44	-0.0041	NEUTRAL	NA	8	"ADAMTS16,ICE1,IRX1,MED10,NSUN2,PAPD7,SRD5A1,UBE2QL1"
TCGA.A6.3808.01A	5	3601039	34896780	722	0.0752	NEUTRAL	NA	55	"ADAMTS12,ADAMTS16,ADCY2,AMACR,ANKH,ANKRD33B,BASP1,C1QTNF3,C5orf22,C5orf49,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CMBL,CTNND2,DAP,DNAH5,DROSHA,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GOLPH3,ICE1,IRX1,MARCH11,MARCH6,MED10,MTMR12,MTRR,MYO10,NPR3,NSUN2,OTULIN,PAPD7,PDZD2,PRDM9,RAI14,ROPN1L,RXFP3,SEMA5A,SLC45A2,SRD5A1,SUB1,TARS,TAS2R1,TRIO,TTC23L,UBE2QL1,ZFR,ZNF622"
TCGA.A6.5665	5	3654011	5400618	931	-0.4046	NEUTRAL	NA	1	ADAMTS16
TCGA.AA.3850	5	3697285	11722531	4053	0.04265	NEUTRAL	NA	21	"ADAMTS16,ADCY2,ANKRD33B,C5orf49,CCT5,CMBL,CTNND2,DAP,FAM173B,FASTKD3,ICE1,MARCH6,MED10,MTRR,NSUN2,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,UBE2QL1"
TCGA.AA.3941	5	3702042	10059469	3253	0.0157	NEUTRAL	NA	13	"ADAMTS16,ADCY2,C5orf49,FASTKD3,ICE1,MED10,MTRR,NSUN2,PAPD7,SEMA5A,SRD5A1,TAS2R1,UBE2QL1"
TCGA.AA.3982	5	3706196	4440129	367	0.082	NEUTRAL	NA	0	None
TCGA.EI.6883	5	3899675	180692832	53751	0.2495	NEUTRAL	NA	822	Too-Many
TCGA.AA.3982	5	4474328	5153910	325	0.1152	NEUTRAL	NA	1	ADAMTS16
TCGA.AF.2692	5	4672254	180692832	53513	0.0444	NEUTRAL	NA	822	Too-Many
TCGA.EI.7002	5	4703624	54636922	14828	0.0139	NEUTRAL	NA	130	Too-Many
TCGA.AA.3982	5	5157287	5745664	349	0.2926	NEUTRAL	NA	2	"ADAMTS16,ICE1"
TCGA.AG.4009.01A	5	5182193	6668297	64	-0.1963	NEUTRAL	NA	6	"ADAMTS16,ICE1,MED10,NSUN2,SRD5A1,UBE2QL1"
TCGA.AA.3930.01A	5	5190046	19503094	448	-0.0104	NEUTRAL	NA	33	"ADAMTS16,ADCY2,ANKH,ANKRD33B,BASP1,C5orf49,CCT5,CDH18,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,MARCH11,MARCH6,MED10,MTRR,MYO10,NSUN2,OTULIN,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,TRIO,UBE2QL1,ZNF622"
TCGA.AA.A00L.01A	5	5232431	6607291	18	-0.0812	NEUTRAL	NA	5	"ADAMTS16,ICE1,MED10,NSUN2,UBE2QL1"
TCGA.AG.A01W.01A	5	5239169	14369576	312	-0.2474	NEUTRAL	NA	23	"ADAMTS16,ADCY2,ANKRD33B,C5orf49,CCT5,CMBL,CTNND2,DAP,DNAH5,FAM173B,FASTKD3,ICE1,MARCH6,MED10,MTRR,NSUN2,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,TRIO,UBE2QL1"
TCGA.AG.A00Y.01A	5	5239762	67593199	2009	-0.1191	NEUTRAL	NA	175	Too-Many
TCGA.A6.5665	5	5404365	167365438	48217	0.0494	NEUTRAL	NA	694	Too-Many
TCGA.AA.A010.01A	5	5436459	6668297	48	-0.0467	NEUTRAL	NA	5	"ICE1,MED10,NSUN2,SRD5A1,UBE2QL1"
TCGA.AA.3982	5	5752973	6910109	642	0.2353	NEUTRAL	NA	5	"MED10,NSUN2,PAPD7,SRD5A1,UBE2QL1"
TCGA.AG.3591	5	5802963	46097058	12686	0.16	NEUTRAL	NA	107	Too-Many
TCGA.3L.AA1B	5	6556373	6604969	30	-0.2579	NEUTRAL	NA	1	NSUN2
TCGA.AG.A00C.01A	5	6600028	6754814	34	0.2705	NEUTRAL	NA	3	"NSUN2,PAPD7,SRD5A1"
TCGA.AG.A008.01A	5	6606893	69337349	2075	0.1062	NEUTRAL	NA	186	Too-Many
TCGA.AG.A020	5	6608628	7924913	598	-0.0416	NEUTRAL	NA	7	"ADCY2,C5orf49,FASTKD3,MTRR,NSUN2,PAPD7,SRD5A1"
TCGA.3L.AA1B	5	6608628	119011524	32148	0.1873	NEUTRAL	NA	349	Too-Many
TCGA.F4.6459	5	6639762	180692832	52442	-0.1141	NEUTRAL	NA	817	Too-Many
TCGA.AA.A01Q.01A	5	6754814	7789703	21	0.2231	NEUTRAL	NA	2	"ADCY2,PAPD7"
TCGA.AA.A00F.01A	5	6754814	7804657	23	-0.4409	NEUTRAL	NA	2	"ADCY2,PAPD7"
TCGA.AA.3982	5	6913625	8440903	673	-0.0262	NEUTRAL	NA	4	"ADCY2,C5orf49,FASTKD3,MTRR"
TCGA.AG.3742	5	7202634	84538073	22197	0.0084	NEUTRAL	NA	262	Too-Many
TCGA.AG.A00C.01A	5	7396382	7789703	20	-0.2878	NEUTRAL	NA	1	ADCY2
TCGA.AG.3909.01A	5	7414635	7859497	27	0.3717	NEUTRAL	NA	3	"ADCY2,C5orf49,FASTKD3"
TCGA.AG.A023.01A	5	7414635	67576705	1902	0.0366	NEUTRAL	NA	168	Too-Many
TCGA.AG.4009.01A	5	7520824	7826782	23	-0.1123	NEUTRAL	NA	1	ADCY2
TCGA.CK.5914.01A	5	7520824	7850957	27	0.028	NEUTRAL	NA	2	"ADCY2,C5orf49"
TCGA.AA.A010.01A	5	7520824	9042972	49	0.0803	NEUTRAL	NA	5	"ADCY2,C5orf49,FASTKD3,MTRR,SEMA5A"
TCGA.AG.A00C.01A	5	7802291	7831945	6	0.0877	NEUTRAL	NA	2	"ADCY2,C5orf49"
TCGA.AA.A01Q.01A	5	7802291	9042972	27	-0.3157	NEUTRAL	NA	5	"ADCY2,C5orf49,FASTKD3,MTRR,SEMA5A"
TCGA.G4.6303	5	7813629	7837842	25	-0.1312	NEUTRAL	NA	2	"ADCY2,C5orf49"
TCGA.AA.A00F.01A	5	7816947	7891415	20	0.0449	NEUTRAL	NA	4	"ADCY2,C5orf49,FASTKD3,MTRR"
TCGA.AA.A00D.01A	5	7820659	7885787	16	-0.1462	NEUTRAL	NA	4	"ADCY2,C5orf49,FASTKD3,MTRR"
TCGA.G4.6303	5	7843210	7988771	78	0.2774	NEUTRAL	NA	3	"C5orf49,FASTKD3,MTRR"
TCGA.AG.A00C.01A	5	7869174	7886681	8	0.1832	NEUTRAL	NA	1	MTRR
TCGA.AA.A01K.01A	5	7878042	137213162	4478	0.178	NEUTRAL	NA	439	Too-Many
TCGA.AG.3909.01A	5	7883236	7899980	9	-0.0972	NEUTRAL	NA	1	MTRR
TCGA.AG.4009.01A	5	7883236	11199523	94	-0.1305	NEUTRAL	NA	11	"ANKRD33B,CCT5,CMBL,CTNND2,DAP,FAM173B,MARCH6,MTRR,ROPN1L,SEMA5A,TAS2R1"
TCGA.AA.A00N.01A	5	7889201	9050449	9	0.3543	NEUTRAL	NA	2	"MTRR,SEMA5A"
TCGA.AG.A00C.01A	5	7889201	9379893	27	-0.2971	NEUTRAL	NA	2	"MTRR,SEMA5A"
TCGA.CM.5861	5	7914553	180692832	51805	0.0021	NEUTRAL	NA	811	Too-Many
TCGA.AG.A020	5	7932872	153514811	42313	0	NEUTRAL	NA	636	Too-Many
TCGA.G4.6303	5	7989256	25962631	5808	-0.0643	NEUTRAL	NA	25	"ANKH,ANKRD33B,BASP1,CCT5,CDH10,CDH12,CDH18,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FBXL7,MARCH11,MARCH6,MYO10,OTULIN,PRDM9,ROPN1L,SEMA5A,TAS2R1,TRIO,ZNF622"
TCGA.NH.A6GC	5	8031104	8044161	13	-0.5117	NEUTRAL	NA	0	None
TCGA.NH.A6GC	5	8051150	55170395	13223	0.2794	NEUTRAL	NA	123	Too-Many
TCGA.A6.2672	5	8436946	167365438	46683	0.0573	NEUTRAL	NA	684	Too-Many
TCGA.AA.3982	5	8451756	8599487	92	-0.1404	NEUTRAL	NA	0	None
TCGA.AA.3844	5	8539812	8681627	85	0.0439	NEUTRAL	NA	0	None
TCGA.AA.3982	5	8614365	8671854	32	-0.476	NEUTRAL	NA	0	None
TCGA.AA.3982	5	8685783	11340506	1357	0.076	NEUTRAL	NA	10	"ANKRD33B,CCT5,CMBL,CTNND2,DAP,FAM173B,MARCH6,ROPN1L,SEMA5A,TAS2R1"
TCGA.CM.5348	5	8725776	60350486	14659	0.0235	NEUTRAL	NA	139	Too-Many
TCGA.A6.3810.01A	5	9051964	9224748	13	0.0878	NEUTRAL	NA	1	SEMA5A
TCGA.A6.6653	5	9214935	9331476	58	-0.0913	NEUTRAL	NA	1	SEMA5A
TCGA.AZ.6599	5	9214935	105955783	26265	0.037	NEUTRAL	NA	302	Too-Many
TCGA.AA.A01Q.01A	5	9226944	10387046	25	-0.1507	NEUTRAL	NA	6	"CCT5,CMBL,FAM173B,MARCH6,SEMA5A,TAS2R1"
TCGA.A6.3810.01A	5	9226944	37198754	827	-0.1862	NEUTRAL	NA	60	"ADAMTS12,AGXT2,AMACR,ANKH,ANKRD33B,BASP1,BRIX1,C1QTNF3,C5orf22,C5orf42,CAPSL,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CMBL,CTNND2,DAP,DNAH5,DNAJC21,DROSHA,FAM105A,FAM134B,FAM173B,FBXL7,GOLPH3,IL7R,LMBRD2,MARCH11,MARCH6,MTMR12,MYO10,NADK2,NIPBL,NPR3,OTULIN,PDZD2,PRDM9,PRLR,RAD1,RAI14,RANBP3L,ROPN1L,RXFP3,SEMA5A,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TAS2R1,TRIO,TTC23L,UGT3A1,UGT3A2,ZFR,ZNF622"
TCGA.AA.A00L.01A	5	9318405	10377862	20	-0.1681	NEUTRAL	NA	6	"CCT5,CMBL,FAM173B,MARCH6,SEMA5A,TAS2R1"
TCGA.CM.6163	5	9332393	9379370	34	-0.5095	NEUTRAL	NA	1	SEMA5A
TCGA.A6.6653	5	9362994	10536844	592	-0.0199	NEUTRAL	NA	7	"CCT5,CMBL,FAM173B,MARCH6,ROPN1L,SEMA5A,TAS2R1"
TCGA.CM.6163	5	9380797	17513393	3021	0.1488	NEUTRAL	NA	21	"ANKH,ANKRD33B,BASP1,CCT5,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FBXL7,MARCH11,MARCH6,MYO10,OTULIN,ROPN1L,SEMA5A,TAS2R1,TRIO,ZNF622"
TCGA.D5.6538	5	9436877	23765517	4519	-0.0105	NEUTRAL	NA	24	"ANKH,ANKRD33B,BASP1,CCT5,CDH12,CDH18,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FBXL7,MARCH11,MARCH6,MYO10,OTULIN,PRDM9,ROPN1L,SEMA5A,TAS2R1,TRIO,ZNF622"
TCGA.CK.5914.01A	5	9629264	10397343	31	-0.3885	NEUTRAL	NA	5	"CCT5,CMBL,FAM173B,MARCH6,TAS2R1"
TCGA.AG.A00C.01A	5	9629264	10450047	47	0.1614	NEUTRAL	NA	6	"CCT5,CMBL,FAM173B,MARCH6,ROPN1L,TAS2R1"
TCGA.AA.A00F.01A	5	9629264	10761057	49	-0.0487	NEUTRAL	NA	8	"ANKRD33B,CCT5,CMBL,DAP,FAM173B,MARCH6,ROPN1L,TAS2R1"
TCGA.DM.A28K	5	9915514	9921373	9	-0.4881	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	5	10235249	10461298	47	-0.2675	NEUTRAL	NA	5	"CCT5,CMBL,FAM173B,MARCH6,ROPN1L"
TCGA.AA.A00D.01A	5	10250401	10377862	16	-0.1096	NEUTRAL	NA	3	"CCT5,CMBL,MARCH6"
TCGA.AA.A029.01A	5	10260862	34913524	539	0.3288	NEUTRAL	NA	41	"ADAMTS12,AMACR,ANKH,ANKRD33B,BASP1,C1QTNF3,C5orf22,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CMBL,CTNND2,DAP,DNAH5,DROSHA,FAM105A,FAM134B,FBXL7,GOLPH3,MARCH11,MARCH6,MTMR12,MYO10,NPR3,OTULIN,PDZD2,PRDM9,RAD1,RAI14,ROPN1L,RXFP3,SLC45A2,SUB1,TARS,TRIO,TTC23L,ZFR,ZNF622"
TCGA.AA.A01Q.01A	5	10390427	10442228	21	0.1975	NEUTRAL	NA	2	"MARCH6,ROPN1L"
TCGA.CK.5914.01A	5	10400839	10442228	16	0.295	NEUTRAL	NA	2	"MARCH6,ROPN1L"
TCGA.AA.A01Q.01A	5	10448321	10761057	8	-0.3257	NEUTRAL	NA	3	"ANKRD33B,DAP,ROPN1L"
TCGA.AG.A00C.01A	5	10461298	13777270	51	-0.2829	NEUTRAL	NA	5	"ANKRD33B,CTNND2,DAP,DNAH5,ROPN1L"
TCGA.A6.6653	5	10565975	27528613	4891	-0.0188	NEUTRAL	NA	19	"ANKH,ANKRD33B,BASP1,CDH10,CDH12,CDH18,CDH9,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FBXL7,MARCH11,MYO10,OTULIN,PRDM9,TRIO,ZNF622"
TCGA.AA.3941	5	10764450	11397572	350	0.0993	NEUTRAL	NA	1	CTNND2
TCGA.AA.A01Q.01A	5	10973545	14394097	125	0.1663	NEUTRAL	NA	3	"CTNND2,DNAH5,TRIO"
TCGA.AG.A01J.01A	5	11018027	67569734	1794	0.0462	NEUTRAL	NA	155	Too-Many
TCGA.AG.A01N.01A	5	11018027	140248639	4881	0.1299	NEUTRAL	NA	492	Too-Many
TCGA.AA.3982	5	11340624	13656623	665	-0.426	NEUTRAL	NA	1	CTNND2
TCGA.5M.AATA	5	11358077	29018198	4806	0.1745	NEUTRAL	NA	17	"ANKH,BASP1,CDH10,CDH12,CDH18,CDH9,CTNND2,DNAH5,FAM105A,FAM134B,FBXL7,MARCH11,MYO10,OTULIN,PRDM9,TRIO,ZNF622"
TCGA.AA.A00F.01A	5	11384729	13786240	34	-0.2618	NEUTRAL	NA	2	"CTNND2,DNAH5"
TCGA.AA.3941	5	11399959	11730813	138	-0.2128	NEUTRAL	NA	1	CTNND2
TCGA.AA.3872	5	11548373	13610705	552	-0.0137	NEUTRAL	NA	1	CTNND2
TCGA.AA.A010.01A	5	11565006	13794018	35	-0.1443	NEUTRAL	NA	2	"CTNND2,DNAH5"
TCGA.AA.3844	5	11582107	13173663	383	0.0098	NEUTRAL	NA	1	CTNND2
TCGA.A6.5661	5	11737240	131110124	33115	0.102	NEUTRAL	NA	369	Too-Many
TCGA.AA.3867	5	11757370	11849589	41	0.2179	NEUTRAL	NA	1	CTNND2
TCGA.A6.6652	5	12381863	12496451	21	-0.434	NEUTRAL	NA	0	None
TCGA.A6.6652	5	12497644	58555880	12475	0.0002	NEUTRAL	NA	125	Too-Many
TCGA.AG.3890	5	12538137	13201471	122	-0.1787	NEUTRAL	NA	0	None
TCGA.CM.4746	5	12616304	180692832	49666	-0.0028	NEUTRAL	NA	801	Too-Many
TCGA.AA.3844	5	13200074	13591598	139	0.0764	NEUTRAL	NA	0	None
TCGA.AG.3890	5	13205664	14673695	621	0.2374	NEUTRAL	NA	4	"DNAH5,FAM105A,OTULIN,TRIO"
TCGA.AA.3666	5	13217808	13926056	289	-0.0025	NEUTRAL	NA	1	DNAH5
TCGA.AA.3850	5	13393196	13803157	158	-0.18465	NEUTRAL	NA	1	DNAH5
TCGA.AA.3941	5	13476406	13508264	20	0.2062	NEUTRAL	NA	0	None
TCGA.AA.3941	5	13519748	13591598	21	-0.0272	NEUTRAL	NA	0	None
TCGA.AA.3844	5	13610705	13656623	15	0.0895	NEUTRAL	NA	0	None
TCGA.AA.3941	5	13626494	13957464	159	-0.0824	NEUTRAL	NA	1	DNAH5
TCGA.AA.3872	5	13630197	46097752	9230	0.0948	NEUTRAL	NA	88	"ADAMTS12,AGXT2,AMACR,ANKH,ANXA2R,BASP1,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH10,CDH12,CDH18,CDH6,CDH9,DAB2,DNAH5,DNAJC21,DROSHA,EGFLAM,FAM105A,FAM134B,FBXL7,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HCN1,HMGCS1,IL7R,LIFR,LMBRD2,MARCH11,MROH2B,MRPS30,MTMR12,MYO10,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OTULIN,OXCT1,PAIP1,PDZD2,PLCXD3,PRDM9,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TRIO,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131,ZNF622"
TCGA.AA.3844	5	13657232	13935746	135	0.3466	NEUTRAL	NA	1	DNAH5
TCGA.AA.3982	5	13657232	13963004	152	-0.0801	NEUTRAL	NA	1	DNAH5
TCGA.AG.4009.01A	5	13692055	13788793	29	-0.1567	NEUTRAL	NA	1	DNAH5
TCGA.AA.3861.01A	5	13692055	68667944	1969	0.0963	NEUTRAL	NA	163	Too-Many
TCGA.AA.3862.01A	5	13692055	68667944	1970	0.3175	NEUTRAL	NA	163	Too-Many
TCGA.AG.A00C.01A	5	13780901	13840986	19	0.2575	NEUTRAL	NA	1	DNAH5
TCGA.AA.A00F.01A	5	13788793	13830113	15	0.2093	NEUTRAL	NA	1	DNAH5
TCGA.AG.4009.01A	5	13792064	13829588	12	-0.4966	NEUTRAL	NA	1	DNAH5
TCGA.AA.A01C.01A	5	13792064	52240733	1167	0.102	NEUTRAL	NA	93	"ADAMTS12,AGXT2,AMACR,ANKH,ANXA2R,BASP1,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH10,CDH12,CDH18,CDH6,CDH9,DAB2,DNAH5,DNAJC21,DROSHA,EGFLAM,EMB,FAM105A,FAM134B,FBXL7,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HCN1,HMGCS1,IL7R,ISL1,ITGA1,LIFR,LMBRD2,MARCH11,MROH2B,MRPS30,MTMR12,MYO10,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OTULIN,OXCT1,PAIP1,PARP8,PDZD2,PELO,PLCXD3,PRDM9,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TRIO,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131,ZNF622"
TCGA.AA.A00D.01A	5	13794018	13830113	12	-0.1355	NEUTRAL	NA	1	DNAH5
TCGA.CK.5914.01A	5	13807649	13830113	11	-0.3733	NEUTRAL	NA	1	DNAH5
TCGA.AA.3850	5	13809956	13867076	36	0.29185	NEUTRAL	NA	1	DNAH5
TCGA.AA.A010.01A	5	13817620	14280384	43	0.0563	NEUTRAL	NA	2	"DNAH5,TRIO"
TCGA.AG.4009.01A	5	13830113	14472633	73	-0.1673	NEUTRAL	NA	2	"DNAH5,TRIO"
TCGA.AA.A00F.01A	5	13830678	14359424	47	-0.1663	NEUTRAL	NA	2	"DNAH5,TRIO"
TCGA.AG.A00C.01A	5	13841773	14462814	65	-0.2179	NEUTRAL	NA	2	"DNAH5,TRIO"
TCGA.AA.3850	5	13874950	13898512	12	-0.14165	NEUTRAL	NA	1	DNAH5
TCGA.AA.3850	5	13900344	15028801	462	0.30705	NEUTRAL	NA	5	"ANKH,DNAH5,FAM105A,OTULIN,TRIO"
TCGA.AZ.4684.01A	5	13917230	14369475	25	-0.0615	NEUTRAL	NA	2	"DNAH5,TRIO"
TCGA.AA.3509.01A	5	13917230	14687593	72	-0.1653	NEUTRAL	NA	4	"DNAH5,FAM105A,OTULIN,TRIO"
TCGA.DM.A28M.01A	5	13919247	36066753	532	0.2155	NEUTRAL	NA	43	"ADAMTS12,AGXT2,AMACR,ANKH,BASP1,BRIX1,C1QTNF3,C5orf22,CAPSL,CDH10,CDH12,CDH18,CDH6,CDH9,DNAH5,DNAJC21,DROSHA,FAM105A,FAM134B,FBXL7,GOLPH3,IL7R,MARCH11,MTMR12,MYO10,NPR3,OTULIN,PDZD2,PRDM9,PRLR,RAD1,RAI14,RXFP3,SLC45A2,SPEF2,SUB1,TARS,TRIO,TTC23L,UGT3A1,UGT3A2,ZFR,ZNF622"
TCGA.AA.3844	5	13936499	13942972	6	-0.3417	NEUTRAL	NA	1	DNAH5
TCGA.AA.3844	5	13943211	13958442	9	0.1831	NEUTRAL	NA	1	DNAH5
TCGA.AA.3941	5	13957745	14330939	198	0.2829	NEUTRAL	NA	1	TRIO
TCGA.AA.3811	5	13964587	15124365	450	0.0633	NEUTRAL	NA	4	"ANKH,FAM105A,OTULIN,TRIO"
TCGA.AA.3982	5	13964587	15168944	456	0.2214	NEUTRAL	NA	4	"ANKH,FAM105A,OTULIN,TRIO"
TCGA.AA.3666	5	14278538	14360435	39	-0.0404	NEUTRAL	NA	1	TRIO
TCGA.AA.A00Z.01A	5	14316575	140166494	74	-0.3076	NEUTRAL	NA	480	Too-Many
TCGA.AA.A00L.01A	5	14330850	16764312	80	-0.292	NEUTRAL	NA	9	"ANKH,FAM105A,FAM134B,FBXL7,MARCH11,MYO10,OTULIN,TRIO,ZNF622"
TCGA.AA.A02H.01A	5	14336618	14482641	34	-0.1751	NEUTRAL	NA	1	TRIO
TCGA.AG.3592	5	14349602	180692832	49088	0	NEUTRAL	NA	800	Too-Many
TCGA.CK.5914.01A	5	14359424	14401042	18	-0.4764	NEUTRAL	NA	1	TRIO
TCGA.AA.A00D.01A	5	14359424	14507940	43	-0.1606	NEUTRAL	NA	1	TRIO
TCGA.AA.A00F.01A	5	14363789	16451725	63	0.2657	NEUTRAL	NA	7	"ANKH,FAM105A,FBXL7,MARCH11,OTULIN,TRIO,ZNF622"
TCGA.AA.A02J.01A	5	14366920	180686963	6868	-0.1369	NEUTRAL	NA	800	Too-Many
TCGA.AA.A00N.01A	5	14374291	14401042	12	-0.2909	NEUTRAL	NA	1	TRIO
TCGA.AZ.4684.01A	5	14374291	14692912	49	-0.3734	NEUTRAL	NA	3	"FAM105A,OTULIN,TRIO"
TCGA.AA.A02E.01A	5	14374291	38490245	703	0.3094	NEUTRAL	NA	55	"ADAMTS12,AGXT2,AMACR,ANKH,BASP1,BRIX1,C1QTNF3,C5orf22,C5orf42,CAPSL,CDH10,CDH12,CDH18,CDH6,CDH9,DNAJC21,DROSHA,EGFLAM,FAM105A,FAM134B,FBXL7,GDNF,GDNF-AS1,GOLPH3,IL7R,LIFR,LMBRD2,MARCH11,MTMR12,MYO10,NADK2,NIPBL,NPR3,NUP155,OTULIN,PDZD2,PRDM9,PRLR,RAD1,RAI14,RANBP3L,RXFP3,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TRIO,TTC23L,UGT3A1,UGT3A2,WDR70,ZFR,ZNF622"
TCGA.AG.A01W.01A	5	14383857	14434192	12	0.1704	NEUTRAL	NA	1	TRIO
TCGA.AG.3909.01A	5	14389366	14461087	11	0.2612	NEUTRAL	NA	1	TRIO
TCGA.AA.A010.01A	5	14419839	14461087	2	-0.4494	NEUTRAL	NA	1	TRIO
TCGA.AA.A01Q.01A	5	14471385	14504465	18	-0.5074	NEUTRAL	NA	1	TRIO
TCGA.AG.A01W.01A	5	14472840	14555639	19	-0.2073	NEUTRAL	NA	1	TRIO
TCGA.AG.3909.01A	5	14487526	14678766	17	-0.0743	NEUTRAL	NA	3	"FAM105A,OTULIN,TRIO"
TCGA.AG.4009.01A	5	14487526	34914752	359	-0.1354	NEUTRAL	NA	33	"ADAMTS12,AMACR,ANKH,BASP1,C1QTNF3,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,FAM105A,FAM134B,FBXL7,GOLPH3,MARCH11,MTMR12,MYO10,NPR3,OTULIN,PDZD2,PRDM9,RAD1,RAI14,RXFP3,SLC45A2,SUB1,TARS,TRIO,TTC23L,ZFR,ZNF622"
TCGA.AG.A00C.01A	5	14492628	33546117	286	-0.118	NEUTRAL	NA	26	"ADAMTS12,ANKH,BASP1,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,FAM105A,FAM134B,FBXL7,GOLPH3,MARCH11,MTMR12,MYO10,NPR3,OTULIN,PDZD2,PRDM9,SUB1,TARS,TRIO,ZFR,ZNF622"
TCGA.AG.3611.01A	5	14496936	14497869	2	-0.0328	NEUTRAL	NA	1	TRIO
TCGA.AG.3611.01A	5	14498191	14871409	23	-0.415	NEUTRAL	NA	4	"ANKH,FAM105A,OTULIN,TRIO"
TCGA.AG.3906.01A	5	14498579	34913524	354	-0.0323	NEUTRAL	NA	33	"ADAMTS12,AMACR,ANKH,BASP1,C1QTNF3,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,FAM105A,FAM134B,FBXL7,GOLPH3,MARCH11,MTMR12,MYO10,NPR3,OTULIN,PDZD2,PRDM9,RAD1,RAI14,RXFP3,SLC45A2,SUB1,TARS,TRIO,TTC23L,ZFR,ZNF622"
TCGA.AG.3891.01A	5	14502629	34914752	354	-0.1406	NEUTRAL	NA	33	"ADAMTS12,AMACR,ANKH,BASP1,C1QTNF3,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,FAM105A,FAM134B,FBXL7,GOLPH3,MARCH11,MTMR12,MYO10,NPR3,OTULIN,PDZD2,PRDM9,RAD1,RAI14,RXFP3,SLC45A2,SUB1,TARS,TRIO,TTC23L,ZFR,ZNF622"
TCGA.AA.A010.01A	5	14507221	14610208	7	-0.1908	NEUTRAL	NA	2	"FAM105A,TRIO"
TCGA.AA.A01Q.01A	5	14507221	56778012	1106	0.0742	NEUTRAL	NA	120	Too-Many
TCGA.AA.3941	5	14534993	15020457	157	0.2621	NEUTRAL	NA	3	"ANKH,FAM105A,OTULIN"
TCGA.AG.A01W.01A	5	14557456	14560993	3	0.3552	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	5	14654059	14811557	21	-0.4584	NEUTRAL	NA	2	"ANKH,OTULIN"
TCGA.AG.3890	5	14677304	15107087	136	-0.1544	NEUTRAL	NA	2	"ANKH,OTULIN"
TCGA.CK.5914.01A	5	14681521	19747004	92	-0.0482	NEUTRAL	NA	9	"ANKH,BASP1,CDH18,FAM134B,FBXL7,MARCH11,MYO10,OTULIN,ZNF622"
TCGA.AA.3509.01A	5	14690121	16670583	41	0.2547	NEUTRAL	NA	7	"ANKH,FAM134B,FBXL7,MARCH11,MYO10,OTULIN,ZNF622"
TCGA.AZ.4684.01A	5	14711268	16474813	27	0.0745	NEUTRAL	NA	5	"ANKH,FAM134B,FBXL7,MARCH11,ZNF622"
TCGA.AG.A01W.01A	5	14822043	16230806	11	0.036	NEUTRAL	NA	3	"ANKH,FBXL7,MARCH11"
TCGA.AA.3941	5	15021924	15328742	63	-0.3693	NEUTRAL	NA	0	None
TCGA.AA.3850	5	15029830	16520378	416	-0.35895	NEUTRAL	NA	4	"FAM134B,FBXL7,MARCH11,ZNF622"
TCGA.AA.3844	5	15081126	15329892	54	0.1038	NEUTRAL	NA	0	None
TCGA.AG.3890	5	15111808	34551089	5465	0.2327	NEUTRAL	NA	26	"ADAMTS12,AMACR,BASP1,C1QTNF3,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,FAM134B,FBXL7,GOLPH3,MARCH11,MTMR12,MYO10,NPR3,PDZD2,PRDM9,RXFP3,SLC45A2,SUB1,TARS,ZFR,ZNF622"
TCGA.AA.3982	5	15177540	16366459	325	-0.433	NEUTRAL	NA	2	"FBXL7,MARCH11"
TCGA.AA.3972	5	15309983	15333852	12	-0.4248	NEUTRAL	NA	0	None
TCGA.AA.3972	5	15334361	31827063	4550	0.2052	NEUTRAL	NA	15	"BASP1,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,FAM134B,FBXL7,MARCH11,MYO10,PDZD2,PRDM9,ZNF622"
TCGA.AA.3977	5	15334361	34379704	5358	-0.0816	NEUTRAL	NA	26	"ADAMTS12,AMACR,BASP1,C1QTNF3,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,FAM134B,FBXL7,GOLPH3,MARCH11,MTMR12,MYO10,NPR3,PDZD2,PRDM9,RXFP3,SLC45A2,SUB1,TARS,ZFR,ZNF622"
TCGA.AA.3864	5	15334361	180692832	48660	-0.0234	NEUTRAL	NA	796	Too-Many
TCGA.AA.3844	5	15335233	16516777	348	0.2205	NEUTRAL	NA	4	"FAM134B,FBXL7,MARCH11,ZNF622"
TCGA.AA.3941	5	15354007	16520378	342	-0.3139	NEUTRAL	NA	4	"FAM134B,FBXL7,MARCH11,ZNF622"
TCGA.AA.3494	5	15723345	18922433	989	-0.4573	NEUTRAL	NA	6	"BASP1,FAM134B,FBXL7,MARCH11,MYO10,ZNF622"
TCGA.A6.6137	5	15723345	58410220	11379	-0.155	NEUTRAL	NA	120	Too-Many
TCGA.AA.3667	5	15723345	180692832	48711	0.0056	NEUTRAL	NA	796	Too-Many
TCGA.AG.3611.01A	5	15927951	16067549	4	-0.0662	NEUTRAL	NA	2	"FBXL7,MARCH11"
TCGA.AG.3909.01A	5	15927951	16508613	19	-0.1971	NEUTRAL	NA	4	"FAM134B,FBXL7,MARCH11,ZNF622"
TCGA.AA.A00N.01A	5	16177798	16483406	13	-0.4786	NEUTRAL	NA	3	"FAM134B,MARCH11,ZNF622"
TCGA.AA.3811	5	16334638	17992569	522	-0.0837	NEUTRAL	NA	4	"BASP1,FAM134B,MYO10,ZNF622"
TCGA.AU.3779	5	16334638	18234562	609	-0.3074	NEUTRAL	NA	4	"BASP1,FAM134B,MYO10,ZNF622"
TCGA.AA.3982	5	16372051	16516777	61	-0.0368	NEUTRAL	NA	2	"FAM134B,ZNF622"
TCGA.AG.3611.01A	5	16451725	66461155	1334	-0.3688	NEUTRAL	NA	145	Too-Many
TCGA.AA.A00F.01A	5	16453091	19838818	21	-0.0981	NEUTRAL	NA	5	"BASP1,CDH18,FAM134B,MYO10,ZNF622"
TCGA.AA.3517	5	16469414	58275599	11080	0.0004	NEUTRAL	NA	117	Too-Many
TCGA.AG.A01W.01A	5	16504716	16930670	53	-0.4289	NEUTRAL	NA	2	"FAM134B,MYO10"
TCGA.AZ.4684.01A	5	16508613	16671482	8	-0.1538	NEUTRAL	NA	2	"FAM134B,MYO10"
TCGA.AA.3982	5	16517129	17663104	358	0.253	NEUTRAL	NA	3	"BASP1,FAM134B,MYO10"
TCGA.AA.3941	5	16522124	17680718	362	0.3127	NEUTRAL	NA	3	"BASP1,FAM134B,MYO10"
TCGA.AA.3509.01A	5	16671482	17276861	39	-0.3243	NEUTRAL	NA	2	"BASP1,MYO10"
TCGA.AZ.4684.01A	5	16672751	17276861	38	-0.4707	NEUTRAL	NA	2	"BASP1,MYO10"
TCGA.AG.3909.01A	5	16699507	16710980	6	-0.1552	NEUTRAL	NA	1	MYO10
TCGA.AG.A01W.01A	5	16988807	23544838	28	-0.112	NEUTRAL	NA	4	"BASP1,CDH12,CDH18,PRDM9"
TCGA.AA.3850	5	17215443	17797639	127	-0.01215	NEUTRAL	NA	1	BASP1
TCGA.AA.3666	5	17504176	21320060	948	0.0035	NEUTRAL	NA	1	CDH18
TCGA.AA.3848	5	17604608	59155059	11044	-0.0482	NEUTRAL	NA	114	Too-Many
TCGA.CM.6163	5	17655338	54636922	9410	0.1715	NEUTRAL	NA	98	"ADAMTS12,AGXT2,AMACR,ANXA2R,ARL15,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CCNO,CDC20B,CDH10,CDH12,CDH18,CDH6,CDH9,DAB2,DHX29,DNAJC21,DROSHA,EGFLAM,EMB,ESM1,FBXO4,FGF10,FST,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,IL7R,ISL1,ITGA1,ITGA2,LIFR,LMBRD2,MCIDAS,MOCS2,MROH2B,MRPS30,MTMR12,NADK2,NDUFS4,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PARP8,PDZD2,PELO,PLCXD3,PRDM9,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKIV2L2,SKP2,SLC1A3,SLC45A2,SNX18,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131"
TCGA.AA.3982	5	17665098	31291780	3536	-0.3208	NEUTRAL	NA	6	"CDH10,CDH12,CDH18,CDH6,CDH9,PRDM9"
TCGA.AA.3941	5	17690727	18054105	107	-0.1708	NEUTRAL	NA	0	None
TCGA.AA.3844	5	17797787	30932992	3321	0.0003	NEUTRAL	NA	5	"CDH10,CDH12,CDH18,CDH9,PRDM9"
TCGA.AA.3867	5	18057605	30907267	3240	0.2864	NEUTRAL	NA	5	"CDH10,CDH12,CDH18,CDH9,PRDM9"
TCGA.AU.3779	5	18236103	169723778	44344	0.0248	NEUTRAL	NA	673	Too-Many
TCGA.NH.A6GA	5	18544342	18586906	15	0.0051	NEUTRAL	NA	0	None
TCGA.NH.A6GA	5	18676282	131862976	31206	0.0274	NEUTRAL	NA	366	Too-Many
TCGA.G4.6322	5	18813395	40973208	6624	0.0138	NEUTRAL	NA	56	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf22,C5orf42,C7,C9,CAPSL,CARD6,CDH10,CDH12,CDH18,CDH6,CDH9,DAB2,DNAJC21,DROSHA,EGFLAM,FYB,GDNF,GDNF-AS1,GOLPH3,IL7R,LIFR,LMBRD2,MTMR12,NADK2,NIPBL,NPR3,NUP155,OSMR,PDZD2,PRDM9,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR"
TCGA.AA.3494	5	18924012	71542202	13800	0.0046	NEUTRAL	NA	167	Too-Many
TCGA.AA.3930.01A	5	19520739	31322883	61	-0.3096	NEUTRAL	NA	6	"CDH10,CDH12,CDH18,CDH6,CDH9,PRDM9"
TCGA.AA.A010.01A	5	19838818	22078524	11	-0.4304	NEUTRAL	NA	2	"CDH12,CDH18"
TCGA.AZ.4682	5	20207713	23452923	719	-0.0312	NEUTRAL	NA	2	"CDH12,CDH18"
TCGA.AF.3913	5	20914698	180692832	47062	-0.0714	NEUTRAL	NA	789	Too-Many
TCGA.AA.3666	5	21324507	40017814	5734	0.3514	NEUTRAL	NA	49	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf22,C5orf42,C9,CAPSL,CDH10,CDH12,CDH6,CDH9,DAB2,DNAJC21,DROSHA,EGFLAM,FYB,GDNF,GDNF-AS1,GOLPH3,IL7R,LIFR,LMBRD2,MTMR12,NADK2,NIPBL,NPR3,NUP155,OSMR,PDZD2,PRDM9,PRLR,RAD1,RAI14,RANBP3L,RICTOR,RXFP3,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,UGT3A1,UGT3A2,WDR70,ZFR"
TCGA.A6.3807	5	21516193	84620267	17211	-0.0274	NEUTRAL	NA	236	Too-Many
TCGA.G5.6641	5	21528803	50928809	7181	0.0159	NEUTRAL	NA	79	"ADAMTS12,AGXT2,AMACR,ANXA2R,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH10,CDH12,CDH6,CDH9,DAB2,DNAJC21,DROSHA,EGFLAM,EMB,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HCN1,HMGCS1,IL7R,ISL1,LIFR,LMBRD2,MROH2B,MRPS30,MTMR12,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PARP8,PDZD2,PLCXD3,PRDM9,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131"
TCGA.AA.3681	5	21573685	84591367	17294	0.316	NEUTRAL	NA	236	Too-Many
TCGA.DM.A1D0	5	21668865	58394759	9728	-0.0073	NEUTRAL	NA	113	Too-Many
TCGA.AA.A00F.01A	5	21751815	34915792	210	-0.3207	NEUTRAL	NA	22	"ADAMTS12,AMACR,C1QTNF3,C5orf22,CDH10,CDH12,CDH6,CDH9,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,PRDM9,RAD1,RAI14,RXFP3,SLC45A2,SUB1,TARS,TTC23L,ZFR"
TCGA.AZ.4684.01A	5	21817017	24535764	24	-0.0907	NEUTRAL	NA	3	"CDH10,CDH12,PRDM9"
TCGA.AZ.4682	5	23465826	67514508	12104	-0.0079	NEUTRAL	NA	141	Too-Many
TCGA.AA.3509.01A	5	23509081	23523337	8	-0.4422	NEUTRAL	NA	1	PRDM9
TCGA.AA.A010.01A	5	23509081	32394433	135	0.3119	NEUTRAL	NA	10	"C5orf22,CDH10,CDH6,CDH9,DROSHA,GOLPH3,MTMR12,PDZD2,PRDM9,ZFR"
TCGA.AA.A00D.01A	5	23522731	23527350	4	-0.0283	NEUTRAL	NA	1	PRDM9
TCGA.AA.A00L.01A	5	23522731	23527350	4	0.0666	NEUTRAL	NA	1	PRDM9
TCGA.AG.A01W.01A	5	23563113	34886031	231	0.053	NEUTRAL	NA	19	"ADAMTS12,AMACR,C1QTNF3,C5orf22,CDH10,CDH6,CDH9,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,RAI14,RXFP3,SLC45A2,SUB1,TARS,TTC23L,ZFR"
TCGA.D5.6922	5	23572682	180692832	46536	-0.3627	NEUTRAL	NA	787	Too-Many
TCGA.D5.6538	5	23770511	60735392	9845	0.3728	NEUTRAL	NA	117	Too-Many
TCGA.CM.6170	5	24624102	127516699	28814	0.0677	NEUTRAL	NA	343	Too-Many
TCGA.EI.7004	5	24869198	32629360	2317	-0.39	NEUTRAL	NA	9	"C5orf22,CDH6,CDH9,DROSHA,GOLPH3,MTMR12,PDZD2,SUB1,ZFR"
TCGA.BM.6198	5	25284844	26736987	402	0.08015	NEUTRAL	NA	0	None
TCGA.AF.A56K	5	25424224	54791441	7556	0.3178	NEUTRAL	NA	95	"ADAMTS12,AGXT2,AMACR,ANXA2R,ARL15,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CCNO,CDC20B,CDH6,CDH9,DAB2,DHX29,DNAJC21,DROSHA,EGFLAM,EMB,ESM1,FBXO4,FGF10,FST,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,IL7R,ISL1,ITGA1,ITGA2,LIFR,LMBRD2,MCIDAS,MOCS2,MROH2B,MRPS30,MTMR12,NADK2,NDUFS4,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PARP8,PDZD2,PELO,PLCXD3,PPAP2A,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKIV2L2,SKP2,SLC1A3,SLC45A2,SNX18,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131"
TCGA.A6.5662	5	25480022	180692832	46013	-0.0025	NEUTRAL	NA	786	Too-Many
TCGA.G4.6323	5	25516283	180692832	46156	0.0012	NEUTRAL	NA	786	Too-Many
TCGA.AM.5820	5	25910022	102848542	20368	-0.0261	NEUTRAL	NA	276	Too-Many
TCGA.G4.6303	5	25964248	35231986	2921	-0.3979	NEUTRAL	NA	23	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf22,CDH6,CDH9,DNAJC21,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,PRLR,RAD1,RAI14,RXFP3,SLC45A2,SUB1,TARS,TTC23L,ZFR"
TCGA.AG.A01Y	5	26270048	55878857	7649	0.038	NEUTRAL	NA	101	Too-Many
TCGA.D5.6923	5	26587920	26727370	40	-0.1011	NEUTRAL	NA	0	None
TCGA.D5.6923	5	26736987	26930569	73	0.173	NEUTRAL	NA	1	CDH9
TCGA.BM.6198	5	26737722	26768857	13	-0.45505	NEUTRAL	NA	0	None
TCGA.BM.6198	5	26785032	40799539	4632	0.03865	NEUTRAL	NA	49	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf22,C5orf42,C9,CAPSL,CDH6,CDH9,DAB2,DNAJC21,DROSHA,EGFLAM,FYB,GDNF,GDNF-AS1,GOLPH3,IL7R,LIFR,LMBRD2,MTMR12,NADK2,NIPBL,NPR3,NUP155,OSMR,PDZD2,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RXFP3,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR"
TCGA.D5.6923	5	26931124	136882333	30944	-0.133	NEUTRAL	NA	410	Too-Many
TCGA.EI.6507	5	27209086	27524451	62	-0.4889	NEUTRAL	NA	0	None
TCGA.AZ.6601	5	27527478	180692832	45634	0.0072	NEUTRAL	NA	785	Too-Many
TCGA.EI.6507	5	27535472	28732578	275	-0.4284	NEUTRAL	NA	0	None
TCGA.AA.A01S	5	27535472	180692832	45592	0.00185	NEUTRAL	NA	785	Too-Many
TCGA.DM.A1DA	5	27652142	180692832	45565	0	NEUTRAL	NA	785	Too-Many
TCGA.A6.6653	5	27717179	62344459	9399	0.0044	NEUTRAL	NA	120	Too-Many
TCGA.EI.6507	5	28754302	29486148	207	-0.4902	NEUTRAL	NA	0	None
TCGA.CM.4752	5	29023303	39349824	3624	0.1736	NEUTRAL	NA	44	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf22,C5orf42,C9,CAPSL,CDH6,DNAJC21,DROSHA,EGFLAM,FYB,GDNF,GDNF-AS1,GOLPH3,IL7R,LIFR,LMBRD2,MTMR12,NADK2,NIPBL,NPR3,NUP155,OSMR,PDZD2,PRLR,RAD1,RAI14,RANBP3L,RICTOR,RXFP3,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,UGT3A1,UGT3A2,WDR70,ZFR"
TCGA.5M.AATA	5	29023303	49597496	5093	0.191	NEUTRAL	NA	72	"ADAMTS12,AGXT2,AMACR,ANXA2R,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH6,DAB2,DNAJC21,DROSHA,EGFLAM,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HCN1,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,MRPS30,MTMR12,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PDZD2,PLCXD3,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131"
TCGA.EI.6507	5	29490495	110430487	21590	0.0271	NEUTRAL	NA	285	Too-Many
TCGA.AA.3680	5	30108376	35652822	1977	-0.2934	NEUTRAL	NA	23	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf22,CDH6,DNAJC21,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,PRLR,RAD1,RAI14,RXFP3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,ZFR"
TCGA.D5.6533	5	30853242	180692832	44581	0.0124	NEUTRAL	NA	785	Too-Many
TCGA.AA.3844	5	30933487	75234581	11976	0.296	NEUTRAL	NA	185	Too-Many
TCGA.AA.3941	5	31082324	31361441	173	-0.1042	NEUTRAL	NA	1	CDH6
TCGA.AA.3850	5	31181471	31514230	196	0.12545	NEUTRAL	NA	2	"CDH6,DROSHA"
TCGA.AA.3982	5	31317528	31458090	103	0.0399	NEUTRAL	NA	2	"CDH6,DROSHA"
TCGA.AA.A00L.01A	5	31322883	33466949	101	-0.3683	NEUTRAL	NA	10	"C5orf22,CDH6,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,SUB1,TARS,ZFR"
TCGA.AA.3941	5	31362593	31458090	58	0.2722	NEUTRAL	NA	1	DROSHA
TCGA.AA.3930.01A	5	31401490	35691092	265	0.0183	NEUTRAL	NA	22	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf22,DNAJC21,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,PRLR,RAD1,RAI14,RXFP3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,ZFR"
TCGA.AA.3509.01A	5	31431635	32380131	79	-0.1811	NEUTRAL	NA	6	"C5orf22,DROSHA,GOLPH3,MTMR12,PDZD2,ZFR"
TCGA.AZ.4684.01A	5	31431635	32380131	79	-0.2902	NEUTRAL	NA	6	"C5orf22,DROSHA,GOLPH3,MTMR12,PDZD2,ZFR"
TCGA.AA.3941	5	31473728	31514230	14	0.1897	NEUTRAL	NA	1	DROSHA
TCGA.AA.3982	5	31473728	31514230	14	0.1297	NEUTRAL	NA	1	DROSHA
TCGA.CK.5914.01A	5	31483598	33546117	119	-0.0423	NEUTRAL	NA	10	"ADAMTS12,C5orf22,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,SUB1,TARS,ZFR"
TCGA.AA.A00D.01A	5	31486544	32235038	42	-0.3768	NEUTRAL	NA	5	"C5orf22,DROSHA,GOLPH3,MTMR12,PDZD2"
TCGA.AA.3982	5	31523596	32772335	480	0.2642	NEUTRAL	NA	8	"C5orf22,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,SUB1,ZFR"
TCGA.AA.A00N.01A	5	31534329	33546117	106	0.1788	NEUTRAL	NA	9	"ADAMTS12,C5orf22,GOLPH3,MTMR12,NPR3,PDZD2,SUB1,TARS,ZFR"
TCGA.AA.3850	5	31552737	31554464	6	-0.45775	NEUTRAL	NA	1	C5orf22
TCGA.AA.3811	5	31575083	32764130	445	0.1787	NEUTRAL	NA	6	"GOLPH3,MTMR12,NPR3,PDZD2,SUB1,ZFR"
TCGA.AA.3972	5	31860056	33461354	529	0.3749	NEUTRAL	NA	7	"GOLPH3,MTMR12,NPR3,PDZD2,SUB1,TARS,ZFR"
TCGA.AG.3909.01A	5	32037305	32143808	21	-0.2888	NEUTRAL	NA	2	"GOLPH3,PDZD2"
TCGA.AG.A011.01A	5	32052670	32097363	13	0.3144	NEUTRAL	NA	1	PDZD2
TCGA.AG.A011.01A	5	32098428	57754199	1130	0.0151	NEUTRAL	NA	103	Too-Many
TCGA.AG.3909.01A	5	32355815	32403163	12	0.2149	NEUTRAL	NA	1	ZFR
TCGA.AZ.4684.01A	5	32388523	35659070	174	-0.101	NEUTRAL	NA	17	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,DNAJC21,NPR3,PRLR,RAD1,RAI14,RXFP3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,ZFR"
TCGA.AA.3509.01A	5	32390374	35659070	173	-0.024	NEUTRAL	NA	17	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,DNAJC21,NPR3,PRLR,RAD1,RAI14,RXFP3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,ZFR"
TCGA.AG.3909.01A	5	32403964	32711835	10	-0.4344	NEUTRAL	NA	3	"NPR3,SUB1,ZFR"
TCGA.AA.A00D.01A	5	32415065	33546117	32	-0.3533	NEUTRAL	NA	5	"ADAMTS12,NPR3,SUB1,TARS,ZFR"
TCGA.AA.A010.01A	5	32588553	34880238	103	0.2944	NEUTRAL	NA	10	"ADAMTS12,AMACR,C1QTNF3,NPR3,RAI14,RXFP3,SLC45A2,SUB1,TARS,TTC23L"
TCGA.EI.7004	5	32629418	50162185	3864	0.076	NEUTRAL	NA	66	"ADAMTS12,AGXT2,AMACR,ANXA2R,BRIX1,C1QTNF3,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,DAB2,DNAJC21,EGFLAM,EMB,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,HCN1,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,MRPS30,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PARP8,PLCXD3,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZNF131"
TCGA.AA.3811	5	32764571	34333401	502	-0.3994	NEUTRAL	NA	7	"ADAMTS12,AMACR,C1QTNF3,NPR3,RXFP3,SLC45A2,TARS"
TCGA.AA.3982	5	32775046	34372082	495	-0.2064	NEUTRAL	NA	7	"ADAMTS12,AMACR,C1QTNF3,NPR3,RXFP3,SLC45A2,TARS"
TCGA.AA.3850	5	32775046	36171932	1179	-0.08985	NEUTRAL	NA	21	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,CAPSL,DNAJC21,IL7R,LMBRD2,NPR3,PRLR,RAD1,RAI14,RXFP3,SKP2,SLC45A2,SPEF2,TARS,TTC23L,UGT3A1,UGT3A2"
TCGA.AA.3941	5	32784128	34400498	499	-0.2494	NEUTRAL	NA	7	"ADAMTS12,AMACR,C1QTNF3,NPR3,RXFP3,SLC45A2,TARS"
TCGA.AG.3909.01A	5	33445379	33546117	18	0.1924	NEUTRAL	NA	2	"ADAMTS12,TARS"
TCGA.AA.A02H.01A	5	33455663	54929541	945	0.2517	NEUTRAL	NA	86	"ADAMTS12,AGXT2,AMACR,ANXA2R,ARL15,BRIX1,C1QTNF3,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CCNO,CDC20B,DAB2,DHX29,DNAJC21,EGFLAM,EMB,ESM1,FBXO4,FGF10,FST,FYB,GDNF,GDNF-AS1,GHR,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,IL7R,ISL1,ITGA1,ITGA2,LIFR,LMBRD2,MCIDAS,MOCS2,MROH2B,MRPS30,NADK2,NDUFS4,NIM1K,NIPBL,NNT,NUP155,OSMR,OXCT1,PAIP1,PARP8,PELO,PLCXD3,PPAP2A,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKIV2L2,SKP2,SLC1A3,SLC38A9,SLC45A2,SNX18,SPEF2,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZNF131"
TCGA.AA.3972	5	33462814	156623903	35255	0.0462	NEUTRAL	NA	617	Too-Many
TCGA.AG.A00C.01A	5	33549271	33649607	14	-0.4591	NEUTRAL	NA	1	ADAMTS12
TCGA.AG.A00C.01A	5	33658238	34922288	61	0.003	NEUTRAL	NA	9	"ADAMTS12,AMACR,BRIX1,C1QTNF3,RAD1,RAI14,RXFP3,SLC45A2,TTC23L"
TCGA.CK.5914.01A	5	33683068	34813642	37	-0.155	NEUTRAL	NA	6	"ADAMTS12,AMACR,C1QTNF3,RAI14,RXFP3,SLC45A2"
TCGA.AA.A00D.01A	5	33751467	34918452	45	-0.4709	NEUTRAL	NA	9	"ADAMTS12,AMACR,BRIX1,C1QTNF3,RAD1,RAI14,RXFP3,SLC45A2,TTC23L"
TCGA.AA.3524	5	33802979	180692832	43536	0.0085	NEUTRAL	NA	775	Too-Many
TCGA.AA.A00N.01A	5	33881185	34896780	50	-0.0941	NEUTRAL	NA	7	"ADAMTS12,AMACR,C1QTNF3,RAI14,RXFP3,SLC45A2,TTC23L"
TCGA.AA.A00L.01A	5	33951612	36219643	158	-0.4528	NEUTRAL	NA	18	"AGXT2,AMACR,BRIX1,C1QTNF3,CAPSL,DNAJC21,IL7R,LMBRD2,NADK2,PRLR,RAD1,RAI14,SKP2,SLC45A2,SPEF2,TTC23L,UGT3A1,UGT3A2"
TCGA.AG.3909.01A	5	34007850	34826384	22	0.2072	NEUTRAL	NA	3	"AMACR,C1QTNF3,RAI14"
TCGA.AA.3982	5	34400498	35135264	286	0.1635	NEUTRAL	NA	7	"AGXT2,BRIX1,DNAJC21,PRLR,RAD1,RAI14,TTC23L"
TCGA.AA.3870	5	34400498	68740652	9208	-0.0287	NEUTRAL	NA	133	Too-Many
TCGA.AA.3977	5	34400498	90302116	14762	-0.0056	NEUTRAL	NA	227	Too-Many
TCGA.AA.3941	5	34403400	35135264	286	0.1531	NEUTRAL	NA	7	"AGXT2,BRIX1,DNAJC21,PRLR,RAD1,RAI14,TTC23L"
TCGA.A6.5666	5	34508182	59278968	6366	-0.0056	NEUTRAL	NA	94	"ACTBL2,AGXT2,ANKRD55,ANXA2R,ARL15,BRIX1,C5orf28,C5orf34,C5orf42,C5orf51,C5orf67,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CCNO,CDC20B,DAB2,DDX4,DHX29,DNAJC21,EGFLAM,EMB,ESM1,FBXO4,FGF10,FST,FYB,GAPT,GDNF,GDNF-AS1,GHR,GPBP1,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,IL31RA,IL6ST,IL7R,ISL1,ITGA1,ITGA2,LIFR,LMBRD2,MAP3K1,MCIDAS,MIER3,MOCS2,MROH2B,MRPS30,NADK2,NDUFS4,NIM1K,NIPBL,NNT,NUP155,OSMR,OXCT1,PAIP1,PARP8,PDE4D,PELO,PLCXD3,PLK2,PPAP2A,PRKAA1,PRLR,PTGER4,RAB3C,RAD1,RAI14,RANBP3L,RICTOR,RPL37,SEPP1,SETD9,SKIV2L2,SKP2,SLC1A3,SLC38A9,SNX18,SPEF2,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZNF131"
TCGA.AG.3890	5	34557674	34754304	103	-0.4367	NEUTRAL	NA	1	RAI14
TCGA.G4.6307	5	34660853	156147364	34744	0.0024	NEUTRAL	NA	605	Too-Many
TCGA.AG.3890	5	34758300	46383334	3049	0.2196	NEUTRAL	NA	57	"AGXT2,ANXA2R,BRIX1,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,DAB2,DNAJC21,EGFLAM,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,HCN1,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,MRPS30,NADK2,NIM1K,NIPBL,NNT,NUP155,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,SEPP1,SKP2,SLC1A3,SPEF2,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZNF131"
TCGA.CK.5914.01A	5	34850242	34896780	7	0.1325	NEUTRAL	NA	1	TTC23L
TCGA.AG.3909.01A	5	34850242	34914752	12	0.2901	NEUTRAL	NA	2	"RAD1,TTC23L"
TCGA.AG.A01W.01A	5	34898720	34945079	8	0.3369	NEUTRAL	NA	4	"BRIX1,DNAJC21,RAD1,TTC23L"
TCGA.AA.A00Q.01A	5	34915792	34953978	20	-0.1876	NEUTRAL	NA	2	"BRIX1,DNAJC21"
TCGA.AG.3909.01A	5	34918452	34937391	11	-0.146	NEUTRAL	NA	2	"BRIX1,DNAJC21"
TCGA.AA.A00F.01A	5	34918452	34941145	13	0.1201	NEUTRAL	NA	2	"BRIX1,DNAJC21"
TCGA.AG.3891.01A	5	34918452	34950258	16	0.3647	NEUTRAL	NA	2	"BRIX1,DNAJC21"
TCGA.AA.A029.01A	5	34918452	49699013	653	0.3731	NEUTRAL	NA	55	"AGXT2,ANXA2R,BRIX1,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,DAB2,DNAJC21,EGFLAM,EMB,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,HCN1,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,MRPS30,NADK2,NIM1K,NIPBL,NNT,NUP155,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PRLR,PTGER4,RANBP3L,RICTOR,RPL37,SEPP1,SKP2,SLC1A3,SPEF2,TTC33,UGT3A1,UGT3A2,WDR70,ZNF131"
TCGA.AA.A00D.01A	5	34919865	34953978	18	0.0398	NEUTRAL	NA	2	"BRIX1,DNAJC21"
TCGA.AG.3909.01A	5	34938942	35010068	11	0.2841	NEUTRAL	NA	2	"AGXT2,DNAJC21"
TCGA.AA.A00F.01A	5	34944931	35618032	29	-0.4139	NEUTRAL	NA	4	"AGXT2,DNAJC21,PRLR,SPEF2"
TCGA.AG.A01W.01A	5	34947380	34958791	9	-0.4484	NEUTRAL	NA	1	DNAJC21
TCGA.A6.3808.01A	5	34949616	37008053	168	0.3743	NEUTRAL	NA	14	"AGXT2,CAPSL,DNAJC21,IL7R,LMBRD2,NADK2,NIPBL,PRLR,RANBP3L,SKP2,SLC1A3,SPEF2,UGT3A1,UGT3A2"
TCGA.AG.A00C.01A	5	34950258	36207233	120	-0.1583	NEUTRAL	NA	11	"AGXT2,CAPSL,DNAJC21,IL7R,LMBRD2,NADK2,PRLR,SKP2,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.A010.01A	5	34953978	35904610	69	-0.0464	NEUTRAL	NA	6	"AGXT2,CAPSL,DNAJC21,IL7R,PRLR,SPEF2"
TCGA.AG.4009.01A	5	34953978	36201145	116	-0.1116	NEUTRAL	NA	11	"AGXT2,CAPSL,DNAJC21,IL7R,LMBRD2,NADK2,PRLR,SKP2,SPEF2,UGT3A1,UGT3A2"
TCGA.AG.3891.01A	5	34953978	36226525	124	-0.2052	NEUTRAL	NA	11	"AGXT2,CAPSL,DNAJC21,IL7R,LMBRD2,NADK2,PRLR,SKP2,SPEF2,UGT3A1,UGT3A2"
TCGA.AG.3906.01A	5	34954631	36219643	119	-0.0433	NEUTRAL	NA	11	"AGXT2,CAPSL,DNAJC21,IL7R,LMBRD2,NADK2,PRLR,SKP2,SPEF2,UGT3A1,UGT3A2"
TCGA.AG.A01W.01A	5	34960661	34974669	7	0.1812	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	5	34976916	35049853	14	-0.3524	NEUTRAL	NA	2	"AGXT2,PRLR"
TCGA.CK.5914.01A	5	34998795	36124233	96	0.2816	NEUTRAL	NA	8	"AGXT2,CAPSL,IL7R,LMBRD2,PRLR,SPEF2,UGT3A1,UGT3A2"
TCGA.AG.A01W.01A	5	35061573	36716218	141	0.0758	NEUTRAL	NA	11	"CAPSL,IL7R,LMBRD2,NADK2,PRLR,RANBP3L,SKP2,SLC1A3,SPEF2,UGT3A1,UGT3A2"
TCGA.AG.3909.01A	5	35086258	36124233	75	0.3063	NEUTRAL	NA	7	"CAPSL,IL7R,LMBRD2,PRLR,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.3941	5	35142188	36199654	398	-0.2356	NEUTRAL	NA	9	"CAPSL,IL7R,LMBRD2,NADK2,PRLR,SKP2,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.3982	5	35172020	35580885	144	-0.1356	NEUTRAL	NA	1	PRLR
TCGA.G4.6303	5	35232226	35588056	122	0.0592	NEUTRAL	NA	0	None
TCGA.AA.3982	5	35608762	36180477	229	-0.0997	NEUTRAL	NA	7	"CAPSL,IL7R,LMBRD2,SKP2,SPEF2,UGT3A1,UGT3A2"
TCGA.G4.6303	5	35608762	40020849	1555	-0.4093	NEUTRAL	NA	23	"C5orf42,C9,CAPSL,DAB2,EGFLAM,FYB,GDNF,GDNF-AS1,IL7R,LIFR,LMBRD2,NADK2,NIPBL,NUP155,OSMR,RANBP3L,RICTOR,SKP2,SLC1A3,SPEF2,UGT3A1,UGT3A2,WDR70"
TCGA.AA.A00F.01A	5	35628510	36217803	71	0.0571	NEUTRAL	NA	8	"CAPSL,IL7R,LMBRD2,NADK2,SKP2,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.3680	5	35659238	96126196	15679	-5.00E-04	NEUTRAL	NA	239	Too-Many
TCGA.AZ.4684.01A	5	35667127	36962173	121	0.3365	NEUTRAL	NA	11	"CAPSL,IL7R,LMBRD2,NADK2,NIPBL,RANBP3L,SKP2,SLC1A3,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.3930.01A	5	35727740	36679682	104	-0.0161	NEUTRAL	NA	10	"CAPSL,IL7R,LMBRD2,NADK2,RANBP3L,SKP2,SLC1A3,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.A010.01A	5	36048943	36124233	16	-0.2797	NEUTRAL	NA	2	"LMBRD2,UGT3A2"
TCGA.DM.A28M.01A	5	36114489	36253720	37	0.3217	NEUTRAL	NA	4	"LMBRD2,NADK2,RANBP3L,SKP2"
TCGA.AA.A00N.01A	5	36124233	36686117	53	-0.1688	NEUTRAL	NA	5	"LMBRD2,NADK2,RANBP3L,SKP2,SLC1A3"
TCGA.AG.3909.01A	5	36136359	36152852	8	-0.3325	NEUTRAL	NA	2	"LMBRD2,SKP2"
TCGA.AA.A00D.01A	5	36137329	36152277	6	-0.0064	NEUTRAL	NA	2	"LMBRD2,SKP2"
TCGA.CK.5914.01A	5	36152852	36177247	8	0.055	NEUTRAL	NA	1	SKP2
TCGA.AA.A00D.01A	5	36152852	37187816	116	-0.5125	NEUTRAL	NA	6	"C5orf42,NADK2,NIPBL,RANBP3L,SKP2,SLC1A3"
TCGA.AA.A010.01A	5	36163696	36201145	13	-0.1048	NEUTRAL	NA	2	"NADK2,SKP2"
TCGA.AG.3909.01A	5	36163696	36269434	31	0.1403	NEUTRAL	NA	3	"NADK2,RANBP3L,SKP2"
TCGA.AA.3867	5	36178292	36266471	26	0.1664	NEUTRAL	NA	3	"NADK2,RANBP3L,SKP2"
TCGA.AG.4009.01A	5	36207233	36995697	41	-0.4651	NEUTRAL	NA	4	"NADK2,NIPBL,RANBP3L,SLC1A3"
TCGA.AG.A00C.01A	5	36211889	36262001	14	0.2269	NEUTRAL	NA	2	"NADK2,RANBP3L"
TCGA.CK.5914.01A	5	36225588	36961539	31	-0.1959	NEUTRAL	NA	4	"NADK2,NIPBL,RANBP3L,SLC1A3"
TCGA.AG.3891.01A	5	36227525	36265009	10	0.2214	NEUTRAL	NA	2	"NADK2,RANBP3L"
TCGA.AA.3982	5	36257133	45939673	2498	-0.192	NEUTRAL	NA	42	"ANXA2R,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,EGFLAM,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,HCN1,HMGCS1,LIFR,MROH2B,MRPS30,NIM1K,NIPBL,NNT,NUP155,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RANBP3L,RICTOR,RPL37,SEPP1,SLC1A3,TTC33,WDR70,ZNF131"
TCGA.DM.A28M.01A	5	36260843	64859097	1104	0.298	NEUTRAL	NA	99	"ACTBL2,ADAMTS6,ANKRD55,ANXA2R,ARL15,C5orf28,C5orf34,C5orf42,C5orf51,C5orf64,C5orf67,C6,C7,C9,CARD6,CCDC152,CCL28,CCNO,CDC20B,CENPK,CWC27,DAB2,DDX4,DEPDC1B,DHX29,DIMT1,EGFLAM,ELOVL7,EMB,ERCC8,ESM1,FAM159B,FBXO4,FGF10,FST,FYB,GAPT,GDNF,GDNF-AS1,GHR,GPBP1,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LIFR,LRRC70,MAP3K1,MCIDAS,MIER3,MOCS2,MROH2B,MRPS30,NDUFAF2,NDUFS4,NIM1K,NIPBL,NNT,NUP155,OSMR,OXCT1,PAIP1,PARP8,PDE4D,PELO,PLCXD3,PLK2,PPAP2A,PPWD1,PRKAA1,PTGER4,RAB3C,RANBP3L,RGS7BP,RICTOR,RNF180,RPL37,SEPP1,SETD9,SKIV2L2,SLC1A3,SLC38A9,SMIM15,SNX18,SREK1IP1,TTC33,WDR70,ZNF131,ZSWIM6"
TCGA.AG.A00C.01A	5	36265009	37008053	33	-0.1411	NEUTRAL	NA	3	"NIPBL,RANBP3L,SLC1A3"
TCGA.AG.3906.01A	5	36265009	37201674	92	0.0035	NEUTRAL	NA	4	"C5orf42,NIPBL,RANBP3L,SLC1A3"
TCGA.AG.A015.01A	5	36265009	49701522	508	0.3158	NEUTRAL	NA	43	"ANXA2R,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,EGFLAM,EMB,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,HCN1,HMGCS1,LIFR,MROH2B,MRPS30,NIM1K,NIPBL,NNT,NUP155,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RANBP3L,RICTOR,RPL37,SEPP1,SLC1A3,TTC33,WDR70,ZNF131"
TCGA.AA.A00F.01A	5	36265489	36671103	8	0.0633	NEUTRAL	NA	2	"RANBP3L,SLC1A3"
TCGA.AG.3891.01A	5	36265489	37184838	85	-0.1001	NEUTRAL	NA	4	"C5orf42,NIPBL,RANBP3L,SLC1A3"
TCGA.AA.A010.01A	5	36269434	36680477	11	-0.2998	NEUTRAL	NA	2	"RANBP3L,SLC1A3"
TCGA.AA.3941	5	36352816	36952049	245	-0.0182	NEUTRAL	NA	2	"NIPBL,SLC1A3"
TCGA.AA.3850	5	36369457	38932465	880	0.02265	NEUTRAL	NA	10	"C5orf42,EGFLAM,GDNF,GDNF-AS1,LIFR,NIPBL,NUP155,OSMR,SLC1A3,WDR70"
TCGA.AA.3930.01A	5	36680477	37014725	24	-0.303	NEUTRAL	NA	2	"NIPBL,SLC1A3"
TCGA.AA.3867	5	36935128	37313997	34	0.1357	NEUTRAL	NA	3	"C5orf42,NIPBL,NUP155"
TCGA.AG.3909.01A	5	36953739	36995697	11	0.1673	NEUTRAL	NA	1	NIPBL
TCGA.AA.A00F.01A	5	36953739	37003310	15	0.0268	NEUTRAL	NA	1	NIPBL
TCGA.AA.A010.01A	5	36975831	37051870	30	-0.4503	NEUTRAL	NA	1	NIPBL
TCGA.AA.3941	5	36991132	38982652	650	0.0305	NEUTRAL	NA	10	"C5orf42,EGFLAM,GDNF,GDNF-AS1,LIFR,NIPBL,NUP155,OSMR,RICTOR,WDR70"
TCGA.AG.3909.01A	5	37000495	37003310	4	-0.3473	NEUTRAL	NA	1	NIPBL
TCGA.AG.A00C.01A	5	37008678	37048567	17	0.1867	NEUTRAL	NA	1	NIPBL
TCGA.AA.3509.01A	5	37010161	37227622	67	-0.0316	NEUTRAL	NA	2	"C5orf42,NIPBL"
TCGA.AZ.4684.01A	5	37010161	37230922	68	-0.0746	NEUTRAL	NA	2	"C5orf42,NIPBL"
TCGA.AA.3930.01A	5	37016089	37247660	72	0.0188	NEUTRAL	NA	2	"C5orf42,NIPBL"
TCGA.AG.3909.01A	5	37022106	37026294	3	-0.3512	NEUTRAL	NA	1	NIPBL
TCGA.CK.5914.01A	5	37022106	37027400	4	-0.512	NEUTRAL	NA	1	NIPBL
TCGA.AG.4009.01A	5	37026294	37046157	6	-0.3731	NEUTRAL	NA	1	NIPBL
TCGA.AG.3909.01A	5	37027400	37049171	8	0.1545	NEUTRAL	NA	1	NIPBL
TCGA.CK.5914.01A	5	37036469	37148245	25	0.1261	NEUTRAL	NA	2	"C5orf42,NIPBL"
TCGA.AA.A00F.01A	5	37038653	37201674	47	0.1058	NEUTRAL	NA	2	"C5orf42,NIPBL"
TCGA.AG.4009.01A	5	37048567	37201674	43	-0.0865	NEUTRAL	NA	2	"C5orf42,NIPBL"
TCGA.AG.A00C.01A	5	37049171	37201674	42	-0.1277	NEUTRAL	NA	2	"C5orf42,NIPBL"
TCGA.AA.A010.01A	5	37052431	38485871	138	0.3353	NEUTRAL	NA	8	"C5orf42,EGFLAM,GDNF,GDNF-AS1,LIFR,NIPBL,NUP155,WDR70"
TCGA.AG.A01W.01A	5	37055146	37205869	41	-0.145	NEUTRAL	NA	2	"C5orf42,NIPBL"
TCGA.A6.3808.01A	5	37107662	37184838	28	0.1937	NEUTRAL	NA	1	C5orf42
TCGA.AG.3909.01A	5	37138772	37201674	27	0.0751	NEUTRAL	NA	1	C5orf42
TCGA.AG.3891.01A	5	37186341	37443349	47	0.2305	NEUTRAL	NA	3	"C5orf42,NUP155,WDR70"
TCGA.AA.A00D.01A	5	37195913	37605129	47	-0.1533	NEUTRAL	NA	3	"C5orf42,NUP155,WDR70"
TCGA.A6.3810.01A	5	37201674	37516582	60	-0.505	NEUTRAL	NA	3	"C5orf42,NUP155,WDR70"
TCGA.AG.A01W.01A	5	37218603	37335261	27	0.0437	NEUTRAL	NA	2	"C5orf42,NUP155"
TCGA.AG.A00C.01A	5	37291954	37325950	17	0.3716	NEUTRAL	NA	1	NUP155
TCGA.AG.3906.01A	5	37304804	38530577	86	0.14	NEUTRAL	NA	6	"EGFLAM,GDNF,GDNF-AS1,LIFR,NUP155,WDR70"
TCGA.AG.3909.01A	5	37307352	37333543	13	0.2814	NEUTRAL	NA	1	NUP155
TCGA.AA.A00L.01A	5	37310625	37396430	27	-0.0974	NEUTRAL	NA	2	"NUP155,WDR70"
TCGA.AA.A00Q.01A	5	37310625	37396430	27	-0.1981	NEUTRAL	NA	2	"NUP155,WDR70"
TCGA.CK.5914.01A	5	37310625	37443349	29	-0.2554	NEUTRAL	NA	2	"NUP155,WDR70"
TCGA.AG.4009.01A	5	37314293	37437963	26	-0.0862	NEUTRAL	NA	2	"NUP155,WDR70"
TCGA.AA.3930.01A	5	37318041	68390028	1138	-0.0632	NEUTRAL	NA	105	Too-Many
TCGA.AA.A00F.01A	5	37325950	38530577	80	0.187	NEUTRAL	NA	6	"EGFLAM,GDNF,GDNF-AS1,LIFR,NUP155,WDR70"
TCGA.AG.A00C.01A	5	37327679	40691832	173	-0.1414	NEUTRAL	NA	12	"C9,DAB2,EGFLAM,FYB,GDNF,GDNF-AS1,LIFR,NUP155,OSMR,PTGER4,RICTOR,WDR70"
TCGA.AG.A01W.01A	5	37337258	37344942	7	-0.3126	NEUTRAL	NA	1	NUP155
TCGA.AG.A01W.01A	5	37346392	37365863	9	0.0722	NEUTRAL	NA	1	NUP155
TCGA.AG.A01W.01A	5	37367494	37406634	14	-0.4545	NEUTRAL	NA	2	"NUP155,WDR70"
TCGA.A6.3808.01A	5	37396430	40909629	175	0.2172	NEUTRAL	NA	16	"C7,C9,CARD6,DAB2,EGFLAM,FYB,GDNF,GDNF-AS1,LIFR,OSMR,PRKAA1,PTGER4,RICTOR,RPL37,TTC33,WDR70"
TCGA.AG.A01W.01A	5	37415149	40803324	165	0.13	NEUTRAL	NA	13	"C9,DAB2,EGFLAM,FYB,GDNF,GDNF-AS1,LIFR,OSMR,PRKAA1,PTGER4,RICTOR,TTC33,WDR70"
TCGA.AG.3891.01A	5	37479888	43039519	293	-0.1578	NEUTRAL	NA	26	"ANXA2R,C5orf51,C6,C7,C9,CARD6,CCDC152,DAB2,EGFLAM,FBXO4,FYB,GDNF,GDNF-AS1,GHR,LIFR,MROH2B,OSMR,OXCT1,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,SEPP1,TTC33,WDR70"
TCGA.AA.3509.01A	5	37605129	38942898	73	-0.0488	NEUTRAL	NA	7	"EGFLAM,GDNF,GDNF-AS1,LIFR,OSMR,RICTOR,WDR70"
TCGA.AZ.4684.01A	5	37605129	38942898	73	-0.1323	NEUTRAL	NA	7	"EGFLAM,GDNF,GDNF-AS1,LIFR,OSMR,RICTOR,WDR70"
TCGA.AG.3909.01A	5	37605129	39315835	129	0.3222	NEUTRAL	NA	9	"C9,EGFLAM,FYB,GDNF,GDNF-AS1,LIFR,OSMR,RICTOR,WDR70"
TCGA.A6.3810.01A	5	37605129	68396582	1113	-0.1776	NEUTRAL	NA	104	Too-Many
TCGA.AG.4009.01A	5	37697720	38527240	49	-0.0667	NEUTRAL	NA	5	"EGFLAM,GDNF,GDNF-AS1,LIFR,WDR70"
TCGA.A6.6651	5	37897857	39156171	514	-0.1521	NEUTRAL	NA	5	"EGFLAM,FYB,LIFR,OSMR,RICTOR"
TCGA.AA.A010.01A	5	38489139	38523474	12	-0.1019	NEUTRAL	NA	1	LIFR
TCGA.CK.5914.01A	5	38493661	40691832	110	0.2909	NEUTRAL	NA	7	"C9,DAB2,FYB,LIFR,OSMR,PTGER4,RICTOR"
TCGA.AA.A017.01A	5	38523474	39383101	89	0.2976	NEUTRAL	NA	6	"C9,DAB2,FYB,LIFR,OSMR,RICTOR"
TCGA.AG.3612	5	38597394	100658216	15692	0.0358	NEUTRAL	NA	229	Too-Many
TCGA.AA.3860	5	38603638	53310138	2757	0.0375	NEUTRAL	NA	42	"ANXA2R,ARL15,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,EMB,FBXO4,FGF10,FST,FYB,GHR,HCN1,HMGCS1,ISL1,ITGA1,ITGA2,MOCS2,MROH2B,MRPS30,NDUFS4,NIM1K,NNT,OSMR,OXCT1,PAIP1,PARP8,PELO,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,SEPP1,TTC33,ZNF131"
TCGA.AG.4009.01A	5	38885424	39315835	71	-0.1921	NEUTRAL	NA	4	"C9,FYB,OSMR,RICTOR"
TCGA.AA.A010.01A	5	38903967	38945574	16	0.3418	NEUTRAL	NA	2	"OSMR,RICTOR"
TCGA.AA.A00F.01A	5	38903967	39201877	48	0.3248	NEUTRAL	NA	3	"FYB,OSMR,RICTOR"
TCGA.AG.3906.01A	5	38903967	52404315	416	-0.0298	NEUTRAL	NA	39	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,EMB,FBXO4,FGF10,FYB,GHR,HCN1,HMGCS1,ISL1,ITGA1,ITGA2,MOCS2,MROH2B,MRPS30,NIM1K,NNT,OSMR,OXCT1,PAIP1,PARP8,PELO,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,SEPP1,TTC33,ZNF131"
TCGA.AA.3850	5	38933411	42236402	1015	-0.42205	NEUTRAL	NA	17	"C5orf51,C6,C7,C9,CARD6,DAB2,FBXO4,FYB,MROH2B,OSMR,OXCT1,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,TTC33"
TCGA.AA.A010.01A	5	38946516	40691832	75	-0.1702	NEUTRAL	NA	5	"C9,DAB2,FYB,PTGER4,RICTOR"
TCGA.AA.3941	5	38989958	46061984	1569	-0.4367	NEUTRAL	NA	31	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,FBXO4,FGF10,FYB,GHR,HCN1,HMGCS1,MROH2B,MRPS30,NIM1K,NNT,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,SEPP1,TTC33,ZNF131"
TCGA.A6.6651	5	39156745	46097646	1531	0.2008	NEUTRAL	NA	30	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,FBXO4,FGF10,FYB,GHR,HCN1,HMGCS1,MROH2B,MRPS30,NIM1K,NNT,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RPL37,SEPP1,TTC33,ZNF131"
TCGA.AZ.4684.01A	5	39331731	41042143	83	0.0214	NEUTRAL	NA	9	"C7,C9,CARD6,DAB2,MROH2B,PRKAA1,PTGER4,RPL37,TTC33"
TCGA.AA.3509.01A	5	39331731	41904438	138	0.3054	NEUTRAL	NA	12	"C6,C7,C9,CARD6,DAB2,MROH2B,OXCT1,PLCXD3,PRKAA1,PTGER4,RPL37,TTC33"
TCGA.AG.4009.01A	5	39364428	40691832	17	-0.118	NEUTRAL	NA	3	"C9,DAB2,PTGER4"
TCGA.AA.A017.01A	5	39388347	40832541	23	-0.1678	NEUTRAL	NA	5	"DAB2,PRKAA1,PTGER4,RPL37,TTC33"
TCGA.AA.3666	5	40018215	180692832	41429	0.0457	NEUTRAL	NA	740	Too-Many
TCGA.G4.6303	5	40022217	81882386	10818	0.0645	NEUTRAL	NA	182	Too-Many
TCGA.AA.A00D.01A	5	40728425	41070844	21	-0.0965	NEUTRAL	NA	6	"C7,CARD6,MROH2B,PRKAA1,RPL37,TTC33"
TCGA.AA.A010.01A	5	40746878	41861374	111	-0.0528	NEUTRAL	NA	9	"C6,C7,CARD6,MROH2B,OXCT1,PLCXD3,PRKAA1,RPL37,TTC33"
TCGA.AG.4009.01A	5	40746878	43493633	168	-0.1097	NEUTRAL	NA	21	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,CARD6,CCDC152,CCL28,FBXO4,GHR,HMGCS1,MROH2B,NIM1K,OXCT1,PLCXD3,PRKAA1,RPL37,SEPP1,TTC33,ZNF131"
TCGA.AA.A00Q.01A	5	40764599	41057148	16	0.0248	NEUTRAL	NA	5	"C7,CARD6,MROH2B,PRKAA1,RPL37"
TCGA.AA.A00L.01A	5	40764599	41070844	24	0.0424	NEUTRAL	NA	5	"C7,CARD6,MROH2B,PRKAA1,RPL37"
TCGA.AG.3909.01A	5	40769465	40798113	6	-0.4425	NEUTRAL	NA	1	PRKAA1
TCGA.CK.5914.01A	5	40777500	40852229	10	-0.0295	NEUTRAL	NA	3	"CARD6,PRKAA1,RPL37"
TCGA.AG.A00C.01A	5	40798113	43453712	153	-0.1152	NEUTRAL	NA	19	"ANXA2R,C5orf28,C5orf51,C6,C7,CARD6,CCDC152,CCL28,FBXO4,GHR,HMGCS1,MROH2B,NIM1K,OXCT1,PLCXD3,PRKAA1,RPL37,SEPP1,ZNF131"
TCGA.AG.A01W.01A	5	40805223	40945374	18	-0.2432	NEUTRAL	NA	3	"C7,CARD6,RPL37"
TCGA.BM.6198	5	40808515	150965974	30771	-0.41395	NEUTRAL	NA	553	Too-Many
TCGA.AA.A00F.01A	5	40832541	41853481	49	0.0076	NEUTRAL	NA	7	"C6,C7,CARD6,MROH2B,OXCT1,PLCXD3,RPL37"
TCGA.CK.5914.01A	5	40909629	41142878	58	0.3052	NEUTRAL	NA	3	"C6,C7,MROH2B"
TCGA.AA.3697	5	40960277	180692832	41088	-0.3025	NEUTRAL	NA	735	Too-Many
TCGA.AG.A01W.01A	5	40964391	41054531	34	0.2161	NEUTRAL	NA	2	"C7,MROH2B"
TCGA.AA.A017.01A	5	41015445	41061643	20	2.00E-04	NEUTRAL	NA	1	MROH2B
TCGA.AG.A01W.01A	5	41068552	41077912	6	-0.5026	NEUTRAL	NA	1	MROH2B
TCGA.AG.A01W.01A	5	41081567	50173531	209	0.1418	NEUTRAL	NA	22	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,CCDC152,CCL28,EMB,FBXO4,FGF10,GHR,HCN1,HMGCS1,MRPS30,NIM1K,NNT,OXCT1,PAIP1,PARP8,PLCXD3,SEPP1,ZNF131"
TCGA.G4.6322	5	41308161	180692832	40974	0.0026	NEUTRAL	NA	732	Too-Many
TCGA.AG.3909.01A	5	41475672	41850085	15	0.2885	NEUTRAL	NA	2	"OXCT1,PLCXD3"
TCGA.AA.A00D.01A	5	41801052	43486966	53	-0.441	NEUTRAL	NA	13	"ANXA2R,C5orf28,C5orf34,C5orf51,CCDC152,CCL28,FBXO4,GHR,HMGCS1,NIM1K,OXCT1,SEPP1,ZNF131"
TCGA.CK.5914.01A	5	41842730	41904438	7	-0.0605	NEUTRAL	NA	1	OXCT1
TCGA.AG.3909.01A	5	41853481	41904438	5	-0.0616	NEUTRAL	NA	1	OXCT1
TCGA.AA.3509.01A	5	41925361	43700169	95	0.2023	NEUTRAL	NA	13	"ANXA2R,C5orf28,C5orf34,CCDC152,CCL28,FBXO4,GHR,HMGCS1,NIM1K,NNT,PAIP1,SEPP1,ZNF131"
TCGA.AA.A017.01A	5	41933998	43494557	49	0.255	NEUTRAL	NA	11	"ANXA2R,C5orf28,C5orf34,CCDC152,CCL28,FBXO4,GHR,HMGCS1,NIM1K,SEPP1,ZNF131"
TCGA.A6.2678	5	42384875	59306722	3734	0.0222	NEUTRAL	NA	52	"ACTBL2,ANKRD55,ANXA2R,ARL15,C5orf28,C5orf34,C5orf67,CCDC152,CCL28,CCNO,CDC20B,DDX4,DHX29,EMB,ESM1,FGF10,FST,GAPT,GHR,GPBP1,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,IL31RA,IL6ST,ISL1,ITGA1,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,MRPS30,NDUFS4,NIM1K,NNT,PAIP1,PARP8,PDE4D,PELO,PLK2,PPAP2A,RAB3C,SEPP1,SETD9,SKIV2L2,SLC38A9,SNX18,ZNF131"
TCGA.AG.3909.01A	5	42565932	42808215	14	0.2008	NEUTRAL	NA	3	"CCDC152,GHR,SEPP1"
TCGA.AA.A00F.01A	5	42565932	43453712	28	0.1325	NEUTRAL	NA	9	"ANXA2R,C5orf28,CCDC152,CCL28,GHR,HMGCS1,NIM1K,SEPP1,ZNF131"
TCGA.CK.5914.01A	5	42688940	42783549	13	0.2231	NEUTRAL	NA	2	"CCDC152,GHR"
TCGA.AA.3850	5	42714691	42880418	38	-0.07895	NEUTRAL	NA	3	"CCDC152,GHR,SEPP1"
TCGA.A6.3808.01A	5	42718101	68462999	829	0.0913	NEUTRAL	NA	83	"ACTBL2,ADAMTS6,ANKRD55,ANXA2R,ARL15,C5orf28,C5orf34,C5orf64,C5orf67,CCDC152,CCL28,CCNB1,CCNO,CD180,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,EMB,ERBB2IP,ERCC8,ESM1,FAM159B,FGF10,FST,GAPT,GHR,GPBP1,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MAST4,MCIDAS,MIER3,MOCS2,MRPS30,NDUFAF2,NDUFS4,NIM1K,NLN,NNT,PAIP1,PARP8,PDE4D,PELO,PIK3R1,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SEPP1,SETD9,SGTB,SKIV2L2,SLC30A5,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZNF131,ZSWIM6"
TCGA.AZ.4684.01A	5	42783549	44809024	80	0.0676	NEUTRAL	NA	12	"ANXA2R,C5orf28,C5orf34,CCDC152,CCL28,FGF10,HMGCS1,NIM1K,NNT,PAIP1,SEPP1,ZNF131"
TCGA.AA.3850	5	42883970	43627767	143	0.36745	NEUTRAL	NA	9	"ANXA2R,C5orf28,C5orf34,CCL28,HMGCS1,NIM1K,NNT,PAIP1,ZNF131"
TCGA.AG.3909.01A	5	43139230	43453712	22	0.1987	NEUTRAL	NA	5	"C5orf28,CCL28,HMGCS1,NIM1K,ZNF131"
TCGA.CK.5914.01A	5	43161794	43453712	20	0.1996	NEUTRAL	NA	5	"C5orf28,CCL28,HMGCS1,NIM1K,ZNF131"
TCGA.AG.3891.01A	5	43245871	56218937	385	-0.1307	NEUTRAL	NA	41	"ANKRD55,ARL15,C5orf28,C5orf34,C5orf67,CCL28,CCNO,CDC20B,DDX4,DHX29,EMB,ESM1,FGF10,FST,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,IL31RA,IL6ST,ISL1,ITGA1,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,MRPS30,NDUFS4,NIM1K,NNT,PAIP1,PARP8,PELO,PPAP2A,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.AA.3560	5	43256444	118170134	20060	0.0251	NEUTRAL	NA	249	Too-Many
TCGA.AA.A010.01A	5	43280043	44310480	60	-0.2827	NEUTRAL	NA	8	"C5orf28,C5orf34,CCL28,FGF10,HMGCS1,NIM1K,NNT,PAIP1"
TCGA.AA.A00N.01A	5	43292549	43453712	13	0.1309	NEUTRAL	NA	3	"C5orf28,CCL28,HMGCS1"
TCGA.AA.A00D.01A	5	43487935	43644267	28	0.0479	NEUTRAL	NA	3	"C5orf34,NNT,PAIP1"
TCGA.AA.A017.01A	5	43502422	43619121	19	-0.4496	NEUTRAL	NA	3	"C5orf34,NNT,PAIP1"
TCGA.CM.4752	5	43551032	45880381	282	0.122	NEUTRAL	NA	5	"FGF10,HCN1,MRPS30,NNT,PAIP1"
TCGA.AG.4009.01A	5	43609279	50137783	69	-0.1802	NEUTRAL	NA	6	"EMB,FGF10,HCN1,MRPS30,NNT,PARP8"
TCGA.AG.3909.01A	5	43619121	44814967	26	-0.377	NEUTRAL	NA	3	"FGF10,MRPS30,NNT"
TCGA.CK.5914.01A	5	43619121	49707029	41	0.1193	NEUTRAL	NA	5	"EMB,FGF10,HCN1,MRPS30,NNT"
TCGA.AA.A00F.01A	5	43624082	45353154	29	0.2581	NEUTRAL	NA	4	"FGF10,HCN1,MRPS30,NNT"
TCGA.AG.A00C.01A	5	43624082	66462278	678	-0.1074	NEUTRAL	NA	68	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,EMB,ERBB2IP,ERCC8,ESM1,FAM159B,FGF10,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HCN1,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MAST4,MCIDAS,MIER3,MOCS2,MRPS30,NDUFAF2,NDUFS4,NLN,NNT,PARP8,PDE4D,PELO,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A00N.01A	5	43628255	50090024	51	-0.2134	NEUTRAL	NA	6	"EMB,FGF10,HCN1,MRPS30,NNT,PARP8"
TCGA.AA.A00D.01A	5	43644666	65334164	569	-0.4965	NEUTRAL	NA	66	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,EMB,ERBB2IP,ERCC8,ESM1,FAM159B,FGF10,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HCN1,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MCIDAS,MIER3,MOCS2,MRPS30,NDUFAF2,NDUFS4,NLN,NNT,PARP8,PDE4D,PELO,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A017.01A	5	43653110	45353154	21	-0.2664	NEUTRAL	NA	4	"FGF10,HCN1,MRPS30,NNT"
TCGA.AG.A02N	5	43917437	115731992	18957	0.0039	NEUTRAL	NA	241	Too-Many
TCGA.AA.3966	5	43917437	180692832	40375	-0.2012	NEUTRAL	NA	716	Too-Many
TCGA.DM.A28K	5	44059763	84783445	10620	0.0068	NEUTRAL	NA	163	Too-Many
TCGA.F5.6811.01A	5	44340823	49733805	19	0.3232	NEUTRAL	NA	4	"EMB,FGF10,HCN1,MRPS30"
TCGA.AA.A01D.01A	5	44388433	139936701	3574	-0.3289	NEUTRAL	NA	384	Too-Many
TCGA.5M.AAT5	5	44555866	166649029	35306	0.2254	NEUTRAL	NA	587	Too-Many
TCGA.CA.5797	5	45196146	58770935	3119	-0.3848	NEUTRAL	NA	38	"ACTBL2,ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,EMB,ESM1,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HCN1,HSPB3,IL31RA,IL6ST,ISL1,ITGA1,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFS4,PARP8,PDE4D,PELO,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.AG.3909.01A	5	45261996	49707029	15	0.2041	NEUTRAL	NA	2	"EMB,HCN1"
TCGA.AG.3728	5	45277111	180692832	40288	-0.3069	NEUTRAL	NA	714	Too-Many
TCGA.AA.A010.01A	5	45303699	50679423	39	-0.2514	NEUTRAL	NA	4	"EMB,HCN1,ISL1,PARP8"
TCGA.AA.A00F.01A	5	45396586	50090024	21	-0.1184	NEUTRAL	NA	3	"EMB,HCN1,PARP8"
TCGA.AH.6549.01A	5	45695720	58999393	382	-0.0797	NEUTRAL	NA	38	"ACTBL2,ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,EMB,ESM1,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HCN1,HSPB3,IL31RA,IL6ST,ISL1,ITGA1,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFS4,PARP8,PDE4D,PELO,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.CM.4752	5	45888503	180692832	40166	-0.3118	NEUTRAL	NA	713	Too-Many
TCGA.AF.2687	5	46061984	101637994	14276	-0.3337	NEUTRAL	NA	198	Too-Many
TCGA.A6.4107	5	46061984	180692832	40177	0.1087	NEUTRAL	NA	713	Too-Many
TCGA.AG.3591	5	46097646	103038494	14631	-0.1872	NEUTRAL	NA	204	Too-Many
TCGA.A6.6651	5	46097752	180692832	40024	-0.1633	NEUTRAL	NA	713	Too-Many
TCGA.AA.3872	5	46099779	180692832	40170	-0.2543	NEUTRAL	NA	713	Too-Many
TCGA.AA.3842	5	46174863	180692832	40179	-0.1173	NEUTRAL	NA	713	Too-Many
TCGA.A6.2674	5	46251305	180692832	40169	-0.1872	NEUTRAL	NA	713	Too-Many
TCGA.CM.6169	5	46278211	180692832	39954	-0.0937	NEUTRAL	NA	713	Too-Many
TCGA.DM.A285	5	46383334	51806264	456	-0.2157	NEUTRAL	NA	3	"EMB,ISL1,PARP8"
TCGA.AA.3982	5	46383334	52233658	651	-0.3812	NEUTRAL	NA	5	"EMB,ISL1,ITGA1,PARP8,PELO"
TCGA.AA.3941	5	46383334	53063109	931	-0.4796	NEUTRAL	NA	9	"EMB,FST,ISL1,ITGA1,ITGA2,MOCS2,NDUFS4,PARP8,PELO"
TCGA.AZ.6606	5	46383334	113322032	17737	0.367	NEUTRAL	NA	224	Too-Many
TCGA.CM.6172	5	46383334	166370460	35077	0.0112	NEUTRAL	NA	585	Too-Many
TCGA.5M.AAT4	5	46383334	180692832	40187	-0.2118	NEUTRAL	NA	713	Too-Many
TCGA.AY.A8YK	5	46383334	180692832	40190	-0.0795	NEUTRAL	NA	713	Too-Many
TCGA.D5.6531	5	46383334	180692832	40178	0.0908	NEUTRAL	NA	713	Too-Many
TCGA.F5.6702	5	49560858	50504622	190	0.0116	NEUTRAL	NA	2	"EMB,PARP8"
TCGA.AG.3890	5	49560858	50931618	268	-0.3305	NEUTRAL	NA	3	"EMB,ISL1,PARP8"
TCGA.AZ.6603	5	49560858	51078551	293	-0.2649	NEUTRAL	NA	3	"EMB,ISL1,PARP8"
TCGA.DC.6155	5	49560858	52046405	543	-0.3307	NEUTRAL	NA	3	"EMB,ISL1,PARP8"
TCGA.AG.A026	5	49560858	59140599	3144	-0.4763	NEUTRAL	NA	37	"ACTBL2,ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,EMB,ESM1,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,ISL1,ITGA1,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFS4,PARP8,PDE4D,PELO,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.AA.3488	5	49560858	59187396	3163	-0.4841	NEUTRAL	NA	37	"ACTBL2,ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,EMB,ESM1,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,ISL1,ITGA1,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFS4,PARP8,PDE4D,PELO,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.F5.6863	5	49560858	65639348	4889	0.0114	NEUTRAL	NA	63	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,EMB,ERBB2IP,ERCC8,ESM1,FAM159B,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFAF2,NDUFS4,NLN,PARP8,PDE4D,PELO,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.RU.A8FL	5	49560858	77837259	8444	-0.0204	NEUTRAL	NA	129	Too-Many
TCGA.AA.3968	5	49560858	88838903	11200	-0.4118	NEUTRAL	NA	165	Too-Many
TCGA.AG.3731	5	49560858	94655142	12477	-0.1206	NEUTRAL	NA	177	Too-Many
TCGA.CA.6719	5	49560858	100239532	13908	-0.2706	NEUTRAL	NA	197	Too-Many
TCGA.DY.A1DG	5	49560858	106187117	15310	-0.4883	NEUTRAL	NA	204	Too-Many
TCGA.AF.6672	5	49560858	146625661	28083	-0.3809	NEUTRAL	NA	476	Too-Many
TCGA.AA.3854	5	49560858	174736223	38729	-0.0269	NEUTRAL	NA	624	Too-Many
TCGA.DC.6158	5	49560858	180520809	40014	-0.2969	NEUTRAL	NA	707	Too-Many
TCGA.AA.3685	5	49560858	180692832	40215	0	NEUTRAL	NA	713	Too-Many
TCGA.AF.3911	5	49560858	180692832	40189	-0.4377	NEUTRAL	NA	713	Too-Many
TCGA.D5.6924	5	49560858	180692832	40118	-0.0241	NEUTRAL	NA	713	Too-Many
TCGA.DC.5869	5	49560858	180692832	40093	-0.2376	NEUTRAL	NA	713	Too-Many
TCGA.F4.6704	5	49560858	180692832	40114	-0.4553	NEUTRAL	NA	713	Too-Many
TCGA.AM.5821	5	49564627	180692832	40069	0	NEUTRAL	NA	713	Too-Many
TCGA.AG.3881	5	49564797	180692832	40202	-0.3159	NEUTRAL	NA	713	Too-Many
TCGA.AA.3856	5	49573124	180692832	40213	-0.221	NEUTRAL	NA	713	Too-Many
TCGA.5M.AATA	5	49597526	109335277	16355	-0.1945	NEUTRAL	NA	209	Too-Many
TCGA.AG.A02X.01A	5	49695019	52394387	96	-0.2899	NEUTRAL	NA	7	"EMB,ISL1,ITGA1,ITGA2,MOCS2,PARP8,PELO"
TCGA.AA.A02W.01A	5	49695019	180666434	5978	-0.3597	NEUTRAL	NA	712	Too-Many
TCGA.AG.A02G.01A	5	49695019	180686963	6002	-0.4561	NEUTRAL	NA	713	Too-Many
TCGA.AA.A02E.01A	5	49695619	67575381	650	-0.0894	NEUTRAL	NA	66	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CD180,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,EMB,ERBB2IP,ERCC8,ESM1,FAM159B,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MAST4,MCIDAS,MIER3,MOCS2,NDUFAF2,NDUFS4,NLN,PARP8,PDE4D,PELO,PIK3R1,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A029.01A	5	49701522	172195768	5355	-0.1392	NEUTRAL	NA	612	Too-Many
TCGA.AG.A015.01A	5	49706669	68860886	745	-0.102	NEUTRAL	NA	79	"ACTBL2,ADAMTS6,AK6,ANKRD55,ARL15,C5orf64,C5orf67,CCDC125,CCNB1,CCNO,CD180,CDC20B,CDK7,CENPH,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,EMB,ERBB2IP,ERCC8,ESM1,FAM159B,FST,GAPT,GPBP1,GPX8,GTF2H2C,GTF2H2C_2,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MARVELD2,MAST4,MCIDAS,MIER3,MOCS2,MRPS36,NDUFAF2,NDUFS4,NLN,OCLN,PARP8,PDE4D,PELO,PIK3R1,PLK2,PPAP2A,PPWD1,RAB3C,RAD17,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC30A5,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TAF9,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AZ.4684.01A	5	49723923	52370873	81	-0.2853	NEUTRAL	NA	6	"EMB,ISL1,ITGA1,ITGA2,PARP8,PELO"
TCGA.F5.6811.01A	5	49734770	52382951	71	-0.2833	NEUTRAL	NA	6	"EMB,ISL1,ITGA1,ITGA2,PARP8,PELO"
TCGA.AA.A017.01A	5	49963869	50116995	14	-0.0959	NEUTRAL	NA	1	PARP8
TCGA.D5.6535	5	50075103	53243413	917	0.0258	NEUTRAL	NA	9	"ARL15,FST,ISL1,ITGA1,ITGA2,MOCS2,NDUFS4,PARP8,PELO"
TCGA.AA.A00F.01A	5	50090669	52385727	72	-0.4354	NEUTRAL	NA	5	"ISL1,ITGA1,ITGA2,PARP8,PELO"
TCGA.EI.7004	5	50162733	61593276	3709	-0.3611	NEUTRAL	NA	42	"ACTBL2,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CDC20B,DDX4,DEPDC1B,DHX29,ELOVL7,ERCC8,ESM1,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,ISL1,ITGA1,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFAF2,NDUFS4,PDE4D,PELO,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SMIM15,SNX18,ZSWIM6"
TCGA.CM.6164	5	50168513	180692832	40051	-0.3242	NEUTRAL	NA	711	Too-Many
TCGA.CM.4747	5	50352481	127342298	22445	-0.3804	NEUTRAL	NA	266	Too-Many
TCGA.F5.6702	5	50509851	180692832	39841	-0.3314	NEUTRAL	NA	711	Too-Many
TCGA.AG.A01W.01A	5	50715181	64910958	536	-0.17	NEUTRAL	NA	55	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERCC8,ESM1,FAM159B,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFAF2,NDUFS4,PDE4D,PELO,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1IP1,TRIM23,ZSWIM6"
TCGA.F5.6465	5	50766107	51489293	139	-0.5004	NEUTRAL	NA	0	None
TCGA.AG.3890	5	50938824	52359036	440	0.0822	NEUTRAL	NA	3	"ITGA1,ITGA2,PELO"
TCGA.F5.6465	5	51493934	52573291	436	0.0568	NEUTRAL	NA	4	"ITGA1,ITGA2,MOCS2,PELO"
TCGA.A6.5659	5	51572583	180692832	36263	-0.3212	NEUTRAL	NA	710	Too-Many
TCGA.DY.A1DC	5	51777807	57291939	1988	0.0426	NEUTRAL	NA	30	"ACTBL2,ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,FST,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,ITGA1,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFS4,PELO,PPAP2A,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.DM.A285	5	51806493	52534061	337	0.3241	NEUTRAL	NA	4	"ITGA1,ITGA2,MOCS2,PELO"
TCGA.AZ.6608	5	51912352	52025718	46	-0.0019	NEUTRAL	NA	0	None
TCGA.DC.6155	5	52047148	52519150	243	0.0376	NEUTRAL	NA	4	"ITGA1,ITGA2,MOCS2,PELO"
TCGA.AG.4009.01A	5	52096182	52362916	44	-0.0317	NEUTRAL	NA	3	"ITGA1,ITGA2,PELO"
TCGA.AG.3909.01A	5	52096182	52386309	57	0.3519	NEUTRAL	NA	3	"ITGA1,ITGA2,PELO"
TCGA.AA.A017.01A	5	52145147	52285240	27	0.0428	NEUTRAL	NA	2	"ITGA1,ITGA2"
TCGA.CK.5914.01A	5	52177654	52205982	8	-0.2786	NEUTRAL	NA	1	ITGA1
TCGA.CK.5914.01A	5	52211252	52322531	16	0.2012	NEUTRAL	NA	2	"ITGA1,ITGA2"
TCGA.AA.3982	5	52234395	52350520	56	0.1339	NEUTRAL	NA	2	"ITGA1,ITGA2"
TCGA.AA.A010.01A	5	52322531	52344154	4	-0.1679	NEUTRAL	NA	1	ITGA2
TCGA.AA.3688	5	52350520	180692832	39504	-0.3661	NEUTRAL	NA	708	Too-Many
TCGA.AA.A00N.01A	5	52351767	52386309	21	-0.1527	NEUTRAL	NA	1	ITGA2
TCGA.AA.3982	5	52359036	52463229	50	0.2349	NEUTRAL	NA	2	"ITGA2,MOCS2"
TCGA.AG.3890	5	52363758	56511249	1439	-0.3577	NEUTRAL	NA	27	"ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,FST,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,ITGA2,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFS4,PPAP2A,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.AG.4009.01A	5	52365892	52368388	3	-0.4396	NEUTRAL	NA	1	ITGA2
TCGA.AG.4009.01A	5	52368908	52404315	16	0.0225	NEUTRAL	NA	2	"ITGA2,MOCS2"
TCGA.AA.A01C.01A	5	52376290	52397159	9	0.2867	NEUTRAL	NA	2	"ITGA2,MOCS2"
TCGA.AA.A017.01A	5	52376290	61690284	327	0.1741	NEUTRAL	NA	41	"ACTBL2,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CDC20B,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERCC8,ESM1,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,ITGA2,KIF2A,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFAF2,NDUFS4,PDE4D,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SMIM15,SNX18,ZSWIM6"
TCGA.AA.3509.01A	5	52376290	68390028	624	0.2095	NEUTRAL	NA	62	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CD180,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERBB2IP,ERCC8,ESM1,FAM159B,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ITGA2,KIF2A,LRRC70,MAP3K1,MAST4,MCIDAS,MIER3,MOCS2,NDUFAF2,NDUFS4,NLN,PDE4D,PIK3R1,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC30A5,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.CK.5914.01A	5	52379168	52781763	18	-0.5118	NEUTRAL	NA	3	"FST,ITGA2,MOCS2"
TCGA.AA.A010.01A	5	52382730	52394387	4	-0.0084	NEUTRAL	NA	2	"ITGA2,MOCS2"
TCGA.AA.A00F.01A	5	52386309	52781763	12	-0.0029	NEUTRAL	NA	3	"FST,ITGA2,MOCS2"
TCGA.F5.6811.01A	5	52387078	52406630	15	0.1967	NEUTRAL	NA	2	"ITGA2,MOCS2"
TCGA.AA.3939.01A	5	52402868	53606189	21	0.1573	NEUTRAL	NA	4	"ARL15,FST,MOCS2,NDUFS4"
TCGA.F5.6811.01A	5	52410307	81649541	1484	-0.3674	NEUTRAL	NA	148	Too-Many
TCGA.AA.3982	5	52465660	52544230	36	-0.2128	NEUTRAL	NA	0	None
TCGA.AZ.6608	5	52477589	53284729	230	-0.1169	NEUTRAL	NA	3	"ARL15,FST,NDUFS4"
TCGA.DC.6155	5	52527004	55704532	1041	0.2983	NEUTRAL	NA	20	"ANKRD55,ARL15,CCNO,CDC20B,DDX4,DHX29,ESM1,FST,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,MCIDAS,NDUFS4,PPAP2A,SKIV2L2,SLC38A9,SNX18"
TCGA.DM.A285	5	52534857	180692832	39310	-0.1492	NEUTRAL	NA	706	Too-Many
TCGA.AA.3982	5	52562053	56810137	1439	0.1201	NEUTRAL	NA	26	"ACTBL2,ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,FST,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,MAP3K1,MCIDAS,MIER3,NDUFS4,PPAP2A,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.F5.6465	5	52583640	52906246	91	-0.4622	NEUTRAL	NA	2	"FST,NDUFS4"
TCGA.AZ.5403	5	52637445	180692832	39312	-0.2336	NEUTRAL	NA	706	Too-Many
TCGA.G5.6641	5	52681740	70690420	5150	-0.5079	NEUTRAL	NA	78	"ACTBL2,ADAMTS6,AK6,ANKRD55,ARL15,C5orf64,C5orf67,CCDC125,CCNB1,CCNO,CD180,CDC20B,CDK7,CENPH,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERBB2IP,ERCC8,ESM1,FAM159B,FST,GAPT,GPBP1,GPX8,GTF2H2,GTF2H2C,GTF2H2C_2,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,KIF2A,LRRC70,MAP3K1,MARVELD2,MAST4,MCIDAS,MIER3,MRPS36,NAIP,NDUFAF2,NDUFS4,NLN,OCLN,PDE4D,PIK3R1,PLK2,PPAP2A,PPWD1,RAB3C,RAD17,RGS7BP,RNF180,SERF1A,SERF1B,SETD9,SGTB,SKIV2L2,SLC30A5,SLC38A9,SMIM15,SMN1,SMN2,SNX18,SREK1,SREK1IP1,TAF9,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A01C.01A	5	52778663	67569734	547	0.1276	NEUTRAL	NA	59	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CD180,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERBB2IP,ERCC8,ESM1,FAM159B,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,KIF2A,LRRC70,MAP3K1,MAST4,MCIDAS,MIER3,NDUFAF2,NDUFS4,NLN,PDE4D,PIK3R1,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A010.01A	5	52856441	53751591	12	0.3732	NEUTRAL	NA	3	"ARL15,HSPB3,NDUFS4"
TCGA.AA.A00F.01A	5	52856441	54442404	31	-0.4209	NEUTRAL	NA	8	"ARL15,CDC20B,ESM1,GZMA,GZMK,HSPB3,NDUFS4,SNX18"
TCGA.AG.4009.01A	5	52856441	54442404	37	-0.0979	NEUTRAL	NA	8	"ARL15,CDC20B,ESM1,GZMA,GZMK,HSPB3,NDUFS4,SNX18"
TCGA.CK.5914.01A	5	52856441	56206115	207	0.0999	NEUTRAL	NA	22	"ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,MAP3K1,MCIDAS,NDUFS4,PPAP2A,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.AG.3906.01A	5	52856441	56226441	205	-0.0372	NEUTRAL	NA	23	"ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,MAP3K1,MCIDAS,MIER3,NDUFS4,PPAP2A,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.AG.A02X.01A	5	52856441	66456236	529	-0.1867	NEUTRAL	NA	56	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERBB2IP,ERCC8,ESM1,FAM159B,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,KIF2A,LRRC70,MAP3K1,MAST4,MCIDAS,MIER3,NDUFAF2,NDUFS4,NLN,PDE4D,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.F5.6465	5	52937808	55207549	755	0.0073	NEUTRAL	NA	17	"ARL15,CCNO,CDC20B,DDX4,DHX29,ESM1,GPX8,GZMA,GZMK,HSPB3,IL31RA,MCIDAS,NDUFS4,PPAP2A,SKIV2L2,SLC38A9,SNX18"
TCGA.AA.3850	5	53065653	53448400	140	0.18025	NEUTRAL	NA	1	ARL15
TCGA.AA.3941	5	53065653	56623760	1247	0.103	NEUTRAL	NA	23	"ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,MAP3K1,MCIDAS,MIER3,PPAP2A,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.D5.6927	5	53232365	54301407	498	0.0041	NEUTRAL	NA	4	"ARL15,ESM1,HSPB3,SNX18"
TCGA.D5.6535	5	53260678	53620601	160	-0.3334	NEUTRAL	NA	1	ARL15
TCGA.AA.3850	5	53469058	53968121	234	0.08925	NEUTRAL	NA	3	"ARL15,HSPB3,SNX18"
TCGA.AZ.6608	5	53472857	53829527	147	-0.1172	NEUTRAL	NA	3	"ARL15,HSPB3,SNX18"
TCGA.D5.6535	5	53623312	59073171	1986	0.0021	NEUTRAL	NA	27	"ACTBL2,ANKRD55,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,MAP3K1,MCIDAS,MIER3,PDE4D,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.AA.3939.01A	5	53838982	70351131	706	0.1309	NEUTRAL	NA	74	"ACTBL2,ADAMTS6,AK6,ANKRD55,C5orf64,C5orf67,CCDC125,CCNB1,CCNO,CD180,CDC20B,CDK7,CENPH,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERBB2IP,ERCC8,ESM1,FAM159B,GAPT,GPBP1,GPX8,GTF2H2,GTF2H2C,GTF2H2C_2,GZMA,GZMK,HTR1A,IL31RA,IL6ST,IPO11,KIF2A,LRRC70,MAP3K1,MARVELD2,MAST4,MCIDAS,MIER3,MRPS36,NAIP,NDUFAF2,NLN,OCLN,PDE4D,PIK3R1,PLK2,PPAP2A,PPWD1,RAB3C,RAD17,RGS7BP,RNF180,SERF1A,SERF1B,SETD9,SGTB,SKIV2L2,SLC30A5,SLC38A9,SMIM15,SMN1,SMN2,SNX18,SREK1,SREK1IP1,TAF9,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AY.A71X	5	53922846	54763073	299	0.0394	NEUTRAL	NA	10	"CCNO,CDC20B,DHX29,ESM1,GPX8,GZMA,GZMK,MCIDAS,PPAP2A,SKIV2L2"
TCGA.AA.3850	5	53987532	54441150	197	-0.00885	NEUTRAL	NA	4	"CDC20B,ESM1,GZMA,GZMK"
TCGA.AA.3678	5	54047161	129194932	21802	-0.4865	NEUTRAL	NA	262	Too-Many
TCGA.F4.6461	5	54168151	56954181	916	-0.4992	NEUTRAL	NA	21	"ACTBL2,ANKRD55,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,GPBP1,GPX8,GZMA,GZMK,IL31RA,IL6ST,MAP3K1,MCIDAS,MIER3,PPAP2A,SETD9,SKIV2L2,SLC38A9"
TCGA.DM.A1DB	5	54280897	56742261	761	0.0493	NEUTRAL	NA	20	"ANKRD55,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,GPBP1,GPX8,GZMA,GZMK,IL31RA,IL6ST,MAP3K1,MCIDAS,MIER3,PPAP2A,SETD9,SKIV2L2,SLC38A9"
TCGA.D5.6927	5	54317899	180692832	38645	0.0031	NEUTRAL	NA	700	Too-Many
TCGA.AA.A010.01A	5	54398446	54442404	15	-0.1685	NEUTRAL	NA	2	"CDC20B,GZMA"
TCGA.AA.3850	5	54444879	55118674	119	0.33985	NEUTRAL	NA	9	"CCNO,CDC20B,DDX4,DHX29,GPX8,MCIDAS,PPAP2A,SKIV2L2,SLC38A9"
TCGA.AA.A00F.01A	5	54455974	54527151	7	0.0839	NEUTRAL	NA	4	"CCNO,CDC20B,GPX8,MCIDAS"
TCGA.AG.4009.01A	5	54468711	54585995	23	-0.0974	NEUTRAL	NA	4	"CCNO,CDC20B,DHX29,MCIDAS"
TCGA.AA.A010.01A	5	54527151	54577153	17	-0.4396	NEUTRAL	NA	2	"CCNO,DHX29"
TCGA.AA.A00F.01A	5	54528150	54585995	21	-0.2495	NEUTRAL	NA	2	"CCNO,DHX29"
TCGA.AG.3909.01A	5	54528950	56205436	152	0.2366	NEUTRAL	NA	12	"ANKRD55,C5orf67,CCNO,DDX4,DHX29,IL31RA,IL6ST,MAP3K1,PPAP2A,SETD9,SKIV2L2,SLC38A9"
TCGA.AA.A00N.01A	5	54557145	56206115	157	0.2512	NEUTRAL	NA	11	"ANKRD55,C5orf67,DDX4,DHX29,IL31RA,IL6ST,MAP3K1,PPAP2A,SETD9,SKIV2L2,SLC38A9"
TCGA.AA.A010.01A	5	54579044	54591166	7	0.2783	NEUTRAL	NA	1	DHX29
TCGA.AA.A00L.01A	5	54585051	54711746	33	-0.006	NEUTRAL	NA	2	"DHX29,SKIV2L2"
TCGA.AA.A00F.01A	5	54589794	54594359	5	0.2094	NEUTRAL	NA	1	DHX29
TCGA.AG.4009.01A	5	54589794	54603183	6	0.2844	NEUTRAL	NA	1	DHX29
TCGA.AA.A00F.01A	5	54603183	66124610	387	-0.2742	NEUTRAL	NA	45	"ACTBL2,ADAMTS6,ANKRD55,C5orf64,C5orf67,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERBB2IP,ERCC8,FAM159B,GAPT,GPBP1,HTR1A,IL31RA,IL6ST,IPO11,KIF2A,LRRC70,MAP3K1,MAST4,MIER3,NDUFAF2,NLN,PDE4D,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AG.4009.01A	5	54603852	56226441	133	-0.1302	NEUTRAL	NA	11	"ANKRD55,C5orf67,DDX4,IL31RA,IL6ST,MAP3K1,MIER3,PPAP2A,SETD9,SKIV2L2,SLC38A9"
TCGA.CL.5918	5	54614906	58609610	1416	0.0007	NEUTRAL	NA	17	"ACTBL2,ANKRD55,C5orf67,DDX4,GAPT,GPBP1,IL31RA,IL6ST,MAP3K1,MIER3,PDE4D,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9"
TCGA.AA.A010.01A	5	54618106	55164597	68	0.1098	NEUTRAL	NA	5	"DDX4,IL31RA,PPAP2A,SKIV2L2,SLC38A9"
TCGA.CM.6163	5	54652576	140833076	24451	-0.3722	NEUTRAL	NA	424	Too-Many
TCGA.AA.A00L.01A	5	54718659	56177380	85	-0.3999	NEUTRAL	NA	9	"ANKRD55,C5orf67,DDX4,IL31RA,IL6ST,MAP3K1,PPAP2A,SKIV2L2,SLC38A9"
TCGA.AF.A56K	5	54801260	180692832	38505	-0.3714	NEUTRAL	NA	692	Too-Many
TCGA.AZ.6603	5	54949188	55220049	53	-0.2455	NEUTRAL	NA	3	"DDX4,IL31RA,SLC38A9"
TCGA.AA.3850	5	55121452	55170395	15	-0.30015	NEUTRAL	NA	1	IL31RA
TCGA.AA.3850	5	55181743	55568486	112	0.35435	NEUTRAL	NA	3	"ANKRD55,IL31RA,IL6ST"
TCGA.NH.A6GC	5	55181743	123226451	19583	-0.0707	NEUTRAL	NA	233	Too-Many
TCGA.AA.A010.01A	5	55238442	55830925	29	0.1627	NEUTRAL	NA	3	"ANKRD55,C5orf67,IL6ST"
TCGA.F5.6465	5	55514694	56187074	348	-0.019	NEUTRAL	NA	3	"ANKRD55,C5orf67,MAP3K1"
TCGA.AA.3850	5	55571585	56623760	421	0.10615	NEUTRAL	NA	5	"C5orf67,GPBP1,MAP3K1,MIER3,SETD9"
TCGA.AG.4008	5	55598947	111845920	15279	-0.2651	NEUTRAL	NA	190	Too-Many
TCGA.AZ.6608	5	55641638	60827968	1710	-0.089	NEUTRAL	NA	16	"ACTBL2,C5orf67,DEPDC1B,ELOVL7,ERCC8,GAPT,GPBP1,MAP3K1,MIER3,NDUFAF2,PDE4D,PLK2,RAB3C,SETD9,SMIM15,ZSWIM6"
TCGA.CM.5341	5	55796318	108341477	14192	-0.2607	NEUTRAL	NA	180	Too-Many
TCGA.DC.6155	5	55856374	180692832	38099	-0.3848	NEUTRAL	NA	686	Too-Many
TCGA.DM.A1HB	5	55964840	93496810	10014	-0.0019	NEUTRAL	NA	147	Too-Many
TCGA.AY.6196	5	55972577	180692832	37765	-0.1892	NEUTRAL	NA	685	Too-Many
TCGA.CA.5254	5	56149428	56187074	9	-0.4369	NEUTRAL	NA	1	MAP3K1
TCGA.CA.5254	5	56190530	57842048	587	0.3428	NEUTRAL	NA	7	"ACTBL2,GAPT,GPBP1,MAP3K1,MIER3,PLK2,SETD9"
TCGA.AA.A010.01A	5	56205436	56212589	7	0.1723	NEUTRAL	NA	1	SETD9
TCGA.AG.3891.01A	5	56219490	56526624	11	0.179	NEUTRAL	NA	3	"GPBP1,MIER3,SETD9"
TCGA.AG.3909.01A	5	56509898	56778012	11	0.371	NEUTRAL	NA	2	"ACTBL2,GPBP1"
TCGA.AA.A010.01A	5	56509898	57755489	22	0.3267	NEUTRAL	NA	3	"ACTBL2,GPBP1,PLK2"
TCGA.AG.4009.01A	5	56509898	61785915	120	-0.0776	NEUTRAL	NA	16	"ACTBL2,C5orf64,DEPDC1B,DIMT1,ELOVL7,ERCC8,GAPT,GPBP1,IPO11,KIF2A,NDUFAF2,PDE4D,PLK2,RAB3C,SMIM15,ZSWIM6"
TCGA.AG.3906.01A	5	56509898	67593199	347	-0.0973	NEUTRAL	NA	35	"ACTBL2,ADAMTS6,C5orf64,CD180,CENPK,CWC27,DEPDC1B,DIMT1,ELOVL7,ERBB2IP,ERCC8,FAM159B,GAPT,GPBP1,HTR1A,IPO11,KIF2A,LRRC70,MAST4,NDUFAF2,NLN,PDE4D,PIK3R1,PLK2,PPWD1,RAB3C,RGS7BP,RNF180,SGTB,SMIM15,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A00L.01A	5	56526624	56558394	8	-0.3009	NEUTRAL	NA	1	GPBP1
TCGA.AG.3890	5	56527466	56690168	37	0.1935	NEUTRAL	NA	1	GPBP1
TCGA.AG.3891.01A	5	56531760	61673446	96	-0.1867	NEUTRAL	NA	14	"ACTBL2,C5orf64,DEPDC1B,ELOVL7,ERCC8,GAPT,GPBP1,KIF2A,NDUFAF2,PDE4D,PLK2,RAB3C,SMIM15,ZSWIM6"
TCGA.AA.3850	5	56624619	60401441	1231	-0.43445	NEUTRAL	NA	9	"ACTBL2,DEPDC1B,ELOVL7,ERCC8,GAPT,NDUFAF2,PDE4D,PLK2,RAB3C"
TCGA.AA.3941	5	56624619	60401441	1229	-0.3926	NEUTRAL	NA	9	"ACTBL2,DEPDC1B,ELOVL7,ERCC8,GAPT,NDUFAF2,PDE4D,PLK2,RAB3C"
TCGA.A6.2686	5	56644756	172935178	35583	-0.3514	NEUTRAL	NA	587	Too-Many
TCGA.AG.3890	5	56698241	94478880	10188	-0.3457	NEUTRAL	NA	145	Too-Many
TCGA.F5.6465	5	56698334	58012600	514	0.0106	NEUTRAL	NA	4	"ACTBL2,GAPT,PLK2,RAB3C"
TCGA.AA.3982	5	56810276	67275355	3304	-0.2725	NEUTRAL	NA	32	"ADAMTS6,C5orf64,CD180,CENPK,CWC27,DEPDC1B,DIMT1,ELOVL7,ERBB2IP,ERCC8,FAM159B,GAPT,HTR1A,IPO11,KIF2A,LRRC70,MAST4,NDUFAF2,NLN,PDE4D,PLK2,PPWD1,RAB3C,RGS7BP,RNF180,SGTB,SMIM15,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.F4.6461	5	56957895	58123361	450	0.0317	NEUTRAL	NA	3	"GAPT,PLK2,RAB3C"
TCGA.A6.2675	5	56979255	94720285	10096	-0.2896	NEUTRAL	NA	144	Too-Many
TCGA.DM.A1DB	5	57000545	57244069	93	-0.0098	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	57351812	75254315	5037	0.0359	NEUTRAL	NA	80	"ADAMTS6,AK6,ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,C5orf64,CARTPT,CCDC125,CCNB1,CD180,CDK7,CENPH,CENPK,COL4A3BP,CWC27,DEPDC1B,DIMT1,ELOVL7,ENC1,ERBB2IP,ERCC8,FAM159B,FAM169A,FCHO2,FOXD1,GAPT,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,HMGCR,HTR1A,IPO11,KIF2A,LRRC70,MAP1B,MARVELD2,MAST4,MCCC2,MRPS27,MRPS36,NAIP,NDUFAF2,NLN,NSA2,OCLN,PDE4D,PIK3R1,PLK2,POC5,POLK,PPWD1,PTCD2,RAB3C,RAD17,RGS7BP,RNF180,SERF1A,SERF1B,SGTB,SLC30A5,SMIM15,SMN1,SMN2,SREK1,SREK1IP1,TAF9,TMEM171,TMEM174,TNPO1,TRAPPC13,TRIM23,UTP15,ZNF366,ZSWIM6"
TCGA.AG.3598	5	57411569	180692832	37629	-0.0017	NEUTRAL	NA	680	Too-Many
TCGA.CK.5914.01A	5	57755489	60083092	45	0.3222	NEUTRAL	NA	6	"DEPDC1B,ELOVL7,GAPT,PDE4D,PLK2,RAB3C"
TCGA.AA.A02H.01A	5	57755489	66440945	296	-0.1102	NEUTRAL	NA	31	"ADAMTS6,C5orf64,CENPK,CWC27,DEPDC1B,DIMT1,ELOVL7,ERBB2IP,ERCC8,FAM159B,GAPT,HTR1A,IPO11,KIF2A,LRRC70,MAST4,NDUFAF2,NLN,PDE4D,PLK2,PPWD1,RAB3C,RGS7BP,RNF180,SGTB,SMIM15,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A01Q.01A	5	57755489	67569167	255	0.1084	NEUTRAL	NA	33	"ADAMTS6,C5orf64,CD180,CENPK,CWC27,DEPDC1B,DIMT1,ELOVL7,ERBB2IP,ERCC8,FAM159B,GAPT,HTR1A,IPO11,KIF2A,LRRC70,MAST4,NDUFAF2,NLN,PDE4D,PIK3R1,PLK2,PPWD1,RAB3C,RGS7BP,RNF180,SGTB,SMIM15,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A010.01A	5	57790312	59982749	36	-0.2835	NEUTRAL	NA	4	"DEPDC1B,GAPT,PDE4D,RAB3C"
TCGA.AA.A00L.01A	5	57790312	60768469	48	-0.4272	NEUTRAL	NA	9	"DEPDC1B,ELOVL7,ERCC8,GAPT,NDUFAF2,PDE4D,RAB3C,SMIM15,ZSWIM6"
TCGA.AG.3909.01A	5	57790312	66445166	304	0.1686	NEUTRAL	NA	30	"ADAMTS6,C5orf64,CENPK,CWC27,DEPDC1B,DIMT1,ELOVL7,ERBB2IP,ERCC8,FAM159B,GAPT,HTR1A,IPO11,KIF2A,LRRC70,MAST4,NDUFAF2,NLN,PDE4D,PPWD1,RAB3C,RGS7BP,RNF180,SGTB,SMIM15,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AG.A011.01A	5	57790312	175511880	5133	0.0202	NEUTRAL	NA	596	Too-Many
TCGA.CA.5254	5	57856129	103292984	12006	0.0123	NEUTRAL	NA	169	Too-Many
TCGA.F5.6465	5	58023998	59234557	467	-0.4814	NEUTRAL	NA	2	"PDE4D,RAB3C"
TCGA.F4.6461	5	58126345	58356125	103	-0.4505	NEUTRAL	NA	2	"PDE4D,RAB3C"
TCGA.AA.3517	5	58276349	58674723	176	-0.3189	NEUTRAL	NA	1	PDE4D
TCGA.AZ.6603	5	58355031	59102759	275	-0.1646	NEUTRAL	NA	1	PDE4D
TCGA.F4.6461	5	58356899	83500729	7232	0.0139	NEUTRAL	NA	124	Too-Many
TCGA.EI.6508	5	58393331	59331365	336	0.0578	NEUTRAL	NA	1	PDE4D
TCGA.AA.A01Z	5	58491405	148251783	25801	0.0017	NEUTRAL	NA	454	Too-Many
TCGA.DM.A28H	5	58579721	59393356	252	0.0385	NEUTRAL	NA	1	PDE4D
TCGA.A6.6137	5	58656251	180692832	37216	-0.1613	NEUTRAL	NA	677	Too-Many
TCGA.AA.3517	5	58677498	58878282	72	-0.3595	NEUTRAL	NA	1	PDE4D
TCGA.AA.3692	5	58679019	180692832	37198	0.0058	NEUTRAL	NA	677	Too-Many
TCGA.DM.A1D0	5	58704649	180692832	36987	-0.0243	NEUTRAL	NA	677	Too-Many
TCGA.AA.3516	5	58828673	180692832	37107	0	NEUTRAL	NA	677	Too-Many
TCGA.DY.A1H8	5	58855924	97045120	10098	0.0122	NEUTRAL	NA	157	Too-Many
TCGA.AA.3517	5	58878426	178097197	36355	-0.0171	NEUTRAL	NA	639	Too-Many
TCGA.A6.2683	5	58901373	59137787	64	-0.3368	NEUTRAL	NA	1	PDE4D
TCGA.D5.6535	5	59073474	59331365	76	-0.3395	NEUTRAL	NA	1	PDE4D
TCGA.AZ.6603	5	59105650	59174102	31	0.3777	NEUTRAL	NA	1	PDE4D
TCGA.AZ.6603	5	59176573	60620979	312	-0.1757	NEUTRAL	NA	6	"DEPDC1B,ELOVL7,ERCC8,NDUFAF2,PDE4D,SMIM15"
TCGA.AA.3492	5	59191611	180692832	37004	0.0009	NEUTRAL	NA	677	Too-Many
TCGA.A6.6652	5	59230406	175329032	35780	0.0069	NEUTRAL	NA	592	Too-Many
TCGA.F5.6465	5	59240575	59627574	78	0.0853	NEUTRAL	NA	1	PDE4D
TCGA.AG.A026	5	59265362	180692832	36974	-0.5087	NEUTRAL	NA	677	Too-Many
TCGA.DC.6682	5	59276439	93496810	8979	-0.1388	NEUTRAL	NA	139	Too-Many
TCGA.AA.3713	5	59277771	59519067	42	-0.4897	NEUTRAL	NA	1	PDE4D
TCGA.AG.3898	5	59322615	180692832	36840	-0.2498	NEUTRAL	NA	677	Too-Many
TCGA.D5.6535	5	59350787	71459148	3069	0.0118	NEUTRAL	NA	53	"ADAMTS6,AK6,BDP1,C5orf64,CARTPT,CCDC125,CCNB1,CD180,CDK7,CENPH,CENPK,CWC27,DEPDC1B,DIMT1,ELOVL7,ERBB2IP,ERCC8,FAM159B,GTF2H2,GTF2H2C,GTF2H2C_2,HTR1A,IPO11,KIF2A,LRRC70,MAP1B,MARVELD2,MAST4,MCCC2,MRPS36,NAIP,NDUFAF2,NLN,OCLN,PDE4D,PIK3R1,PPWD1,RAD17,RGS7BP,RNF180,SERF1A,SERF1B,SGTB,SLC30A5,SMIM15,SMN1,SMN2,SREK1,SREK1IP1,TAF9,TRAPPC13,TRIM23,ZSWIM6"
TCGA.A6.5666	5	59355380	180692832	36952	-0.0042	NEUTRAL	NA	677	Too-Many
TCGA.A6.2678	5	59360340	180692832	36964	0.0029	NEUTRAL	NA	677	Too-Many
TCGA.AF.2689	5	59414825	180692832	36957	-0.0053	NEUTRAL	NA	677	Too-Many
TCGA.EI.6508	5	59439081	59486425	12	0.118	NEUTRAL	NA	1	PDE4D
TCGA.AA.3713	5	59520444	110151790	13329	0.0185	NEUTRAL	NA	175	Too-Many
TCGA.AH.6643	5	59528196	92574892	8825	0.1055	NEUTRAL	NA	135	Too-Many
TCGA.CA.5797	5	59542923	180692832	36918	-0.366	NEUTRAL	NA	677	Too-Many
TCGA.AA.3848	5	59569007	111508822	13806	-0.115	NEUTRAL	NA	181	Too-Many
TCGA.A6.2683	5	59606507	87445192	7701	-0.0678	NEUTRAL	NA	127	Too-Many
TCGA.DM.A28H	5	59627574	92718947	8828	0.0129	NEUTRAL	NA	135	Too-Many
TCGA.F5.6465	5	59634175	61001388	345	-0.5039	NEUTRAL	NA	8	"C5orf64,DEPDC1B,ELOVL7,ERCC8,NDUFAF2,PDE4D,SMIM15,ZSWIM6"
TCGA.EI.6508	5	59759094	90075059	8223	0.0236	NEUTRAL	NA	134	Too-Many
TCGA.AA.3488	5	59771722	180692832	36873	-0.4893	NEUTRAL	NA	677	Too-Many
TCGA.AH.6549.01A	5	59982749	130762870	2594	-0.0888	NEUTRAL	NA	242	Too-Many
TCGA.CK.5914.01A	5	60200569	60768469	12	0.0018	NEUTRAL	NA	4	"ERCC8,NDUFAF2,SMIM15,ZSWIM6"
TCGA.CM.5348	5	60364104	68555363	2573	-0.4609	NEUTRAL	NA	31	"ADAMTS6,C5orf64,CCNB1,CD180,CDK7,CENPH,CENPK,CWC27,DIMT1,ERBB2IP,FAM159B,HTR1A,IPO11,KIF2A,LRRC70,MAST4,MRPS36,NDUFAF2,NLN,PIK3R1,PPWD1,RGS7BP,RNF180,SGTB,SLC30A5,SMIM15,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.A010.01A	5	60394748	61673446	38	-0.1257	NEUTRAL	NA	5	"C5orf64,KIF2A,NDUFAF2,SMIM15,ZSWIM6"
TCGA.AA.3850	5	60407226	62157165	549	0.07025	NEUTRAL	NA	8	"C5orf64,DIMT1,IPO11,KIF2A,LRRC70,NDUFAF2,SMIM15,ZSWIM6"
TCGA.AA.3941	5	60407226	62420715	615	-0.0179	NEUTRAL	NA	8	"C5orf64,DIMT1,IPO11,KIF2A,LRRC70,NDUFAF2,SMIM15,ZSWIM6"
TCGA.D5.6538	5	60759523	172127303	34062	-0.0179	NEUTRAL	NA	568	Too-Many
TCGA.AA.A00L.01A	5	60790050	61684782	23	-0.0951	NEUTRAL	NA	4	"C5orf64,DIMT1,KIF2A,ZSWIM6"
TCGA.F5.6465	5	61010937	63309891	676	0.0075	NEUTRAL	NA	5	"DIMT1,HTR1A,IPO11,KIF2A,LRRC70"
TCGA.AA.3561	5	61126385	180692832	36521	0.0042	NEUTRAL	NA	669	Too-Many
TCGA.EI.7004	5	61606609	180692832	36313	0.003	NEUTRAL	NA	669	Too-Many
TCGA.CK.5914.01A	5	61642918	61645824	3	-0.4642	NEUTRAL	NA	1	KIF2A
TCGA.CK.5914.01A	5	61648398	61684782	17	0.0437	NEUTRAL	NA	2	"DIMT1,KIF2A"
TCGA.AG.3891.01A	5	61676908	61699038	11	0.202	NEUTRAL	NA	2	"DIMT1,KIF2A"
TCGA.AA.A00L.01A	5	61686651	68462999	222	-0.4542	NEUTRAL	NA	23	"ADAMTS6,CCNB1,CD180,CENPK,CWC27,DIMT1,ERBB2IP,FAM159B,HTR1A,IPO11,LRRC70,MAST4,NLN,PIK3R1,PPWD1,RGS7BP,RNF180,SGTB,SLC30A5,SREK1,SREK1IP1,TRAPPC13,TRIM23"
TCGA.AA.A00N.01A	5	61699462	61745739	5	0.1249	NEUTRAL	NA	2	"DIMT1,IPO11"
TCGA.CK.5914.01A	5	61699462	63803547	44	-0.0472	NEUTRAL	NA	6	"DIMT1,HTR1A,IPO11,LRRC70,RGS7BP,RNF180"
TCGA.AG.3891.01A	5	61699462	67593199	240	-0.1696	NEUTRAL	NA	21	"ADAMTS6,CD180,CENPK,CWC27,DIMT1,ERBB2IP,FAM159B,HTR1A,IPO11,LRRC70,MAST4,NLN,PIK3R1,PPWD1,RGS7BP,RNF180,SGTB,SREK1,SREK1IP1,TRAPPC13,TRIM23"
TCGA.AA.A010.01A	5	61766016	61781166	6	0.1427	NEUTRAL	NA	1	IPO11
TCGA.AA.A017.01A	5	61766016	67575381	223	0.1324	NEUTRAL	NA	20	"ADAMTS6,CD180,CENPK,CWC27,ERBB2IP,FAM159B,HTR1A,IPO11,LRRC70,MAST4,NLN,PIK3R1,PPWD1,RGS7BP,RNF180,SGTB,SREK1,SREK1IP1,TRAPPC13,TRIM23"
TCGA.AA.A00N.01A	5	61785126	61789788	3	0.1306	NEUTRAL	NA	1	IPO11
TCGA.AZ.4684.01A	5	61800424	64814253	75	-0.3179	NEUTRAL	NA	10	"ADAMTS6,CENPK,CWC27,FAM159B,HTR1A,IPO11,LRRC70,RGS7BP,RNF180,SREK1IP1"
TCGA.AA.A00N.01A	5	61826474	63496613	15	0.3783	NEUTRAL	NA	4	"HTR1A,IPO11,LRRC70,RNF180"
TCGA.AG.4009.01A	5	61832471	70331452	333	-0.0964	NEUTRAL	NA	39	"ADAMTS6,AK6,CCDC125,CCNB1,CD180,CDK7,CENPH,CENPK,CWC27,ERBB2IP,FAM159B,GTF2H2,GTF2H2C,GTF2H2C_2,HTR1A,IPO11,LRRC70,MARVELD2,MAST4,MRPS36,NAIP,NLN,OCLN,PIK3R1,PPWD1,RAD17,RGS7BP,RNF180,SERF1A,SERF1B,SGTB,SLC30A5,SMN1,SMN2,SREK1,SREK1IP1,TAF9,TRAPPC13,TRIM23"
TCGA.AZ.6608	5	61856155	180692832	36219	-0.1068	NEUTRAL	NA	667	Too-Many
TCGA.AA.A010.01A	5	61922944	68417484	240	0.2301	NEUTRAL	NA	20	"ADAMTS6,CD180,CENPK,CWC27,ERBB2IP,FAM159B,HTR1A,IPO11,MAST4,NLN,PIK3R1,PPWD1,RGS7BP,RNF180,SGTB,SLC30A5,SREK1,SREK1IP1,TRAPPC13,TRIM23"
TCGA.CL.5918	5	61926783	63793416	468	0.049	NEUTRAL	NA	2	"HTR1A,RNF180"
TCGA.AA.3522	5	62313079	130743770	19394	-0.3398	NEUTRAL	NA	230	Too-Many
TCGA.A6.6653	5	62414242	78451298	4641	0.0228	NEUTRAL	NA	85	"ADAMTS6,AGGF1,AK6,ANKDD1B,ANKRA2,ANKRD31,AP3B1,ARHGEF28,ARSB,BDP1,BHMT,BHMT2,BTF3,CARTPT,CCDC125,CCNB1,CD180,CDK7,CENPH,CENPK,COL4A3BP,CRHBP,CWC27,DMGDH,ENC1,ERBB2IP,F2R,F2RL1,F2RL2,FAM159B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,HMGCR,HTR1A,IQGAP2,LHFPL2,MAP1B,MARVELD2,MAST4,MCCC2,MRPS27,MRPS36,NAIP,NLN,NSA2,OCLN,OTP,PDE8B,PIK3R1,POC5,POLK,PPWD1,PTCD2,RAD17,RGS7BP,RNF180,S100Z,SCAMP1,SERF1A,SERF1B,SGTB,SLC30A5,SMN1,SMN2,SREK1,SREK1IP1,SV2C,TAF9,TBCA,TMEM171,TMEM174,TNPO1,TRAPPC13,TRIM23,UTP15,WDR41,ZBED3,ZNF366"
TCGA.AA.3941	5	62421249	62577125	53	-0.4951	NEUTRAL	NA	0	None
TCGA.AZ.6603	5	62855754	180692832	35973	-0.2135	NEUTRAL	NA	665	Too-Many
TCGA.AA.3850	5	63603809	68245458	1589	-0.15975	NEUTRAL	NA	17	"ADAMTS6,CD180,CENPK,CWC27,ERBB2IP,FAM159B,MAST4,NLN,PIK3R1,PPWD1,RGS7BP,RNF180,SGTB,SREK1,SREK1IP1,TRAPPC13,TRIM23"
TCGA.F5.6465	5	63668684	67203827	1207	0.0187	NEUTRAL	NA	16	"ADAMTS6,CD180,CENPK,CWC27,ERBB2IP,FAM159B,MAST4,NLN,PPWD1,RGS7BP,RNF180,SGTB,SREK1,SREK1IP1,TRAPPC13,TRIM23"
TCGA.AA.3941	5	63747615	67293408	1236	-0.134	NEUTRAL	NA	15	"ADAMTS6,CD180,CENPK,CWC27,ERBB2IP,FAM159B,MAST4,NLN,PPWD1,RGS7BP,SGTB,SREK1,SREK1IP1,TRAPPC13,TRIM23"
TCGA.AG.3882	5	63880320	180692832	35842	-0.3505	NEUTRAL	NA	663	Too-Many
TCGA.CL.5918	5	64238730	64723021	133	0.0182	NEUTRAL	NA	2	"ADAMTS6,CWC27"
TCGA.CK.5914.01A	5	64267482	64859097	38	-0.0037	NEUTRAL	NA	4	"ADAMTS6,CENPK,CWC27,PPWD1"
TCGA.CK.5914.01A	5	64881808	64900711	9	0.1882	NEUTRAL	NA	2	"PPWD1,TRIM23"
TCGA.CK.5914.01A	5	64905031	64948278	13	-0.1906	NEUTRAL	NA	2	"TRAPPC13,TRIM23"
TCGA.AG.A01W.01A	5	64926068	65369929	57	-0.3149	NEUTRAL	NA	4	"ERBB2IP,NLN,SGTB,TRAPPC13"
TCGA.CK.5914.01A	5	65018145	66448445	86	0.1726	NEUTRAL	NA	4	"ERBB2IP,MAST4,NLN,SREK1"
TCGA.AZ.4684.01A	5	65290528	65892477	35	0.0138	NEUTRAL	NA	3	"ERBB2IP,MAST4,SREK1"
TCGA.AA.A00D.01A	5	65338853	70930733	144	-0.1906	NEUTRAL	NA	26	"AK6,BDP1,CCDC125,CCNB1,CD180,CDK7,CENPH,ERBB2IP,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MAST4,MCCC2,MRPS36,NAIP,OCLN,PIK3R1,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,SREK1,TAF9"
TCGA.AG.A01W.01A	5	65374635	66160349	26	0.06	NEUTRAL	NA	3	"ERBB2IP,MAST4,SREK1"
TCGA.D5.6929	5	66124225	180692832	35017	-0.035	NEUTRAL	NA	650	Too-Many
TCGA.AG.A01W.01A	5	66231450	66496533	29	-0.1724	NEUTRAL	NA	2	"CD180,MAST4"
TCGA.AA.A00F.01A	5	66426036	68408911	28	-0.0138	NEUTRAL	NA	4	"CD180,MAST4,PIK3R1,SLC30A5"
TCGA.DM.A28M.01A	5	66445166	68840704	119	8.00E-04	NEUTRAL	NA	14	"AK6,CCDC125,CCNB1,CD180,CDK7,CENPH,MARVELD2,MAST4,MRPS36,OCLN,PIK3R1,RAD17,SLC30A5,TAF9"
TCGA.AA.A02H.01A	5	66445166	73985116	351	-0.432	NEUTRAL	NA	40	"AK6,ANKRA2,ARHGEF28,BDP1,BTF3,CARTPT,CCDC125,CCNB1,CD180,CDK7,CENPH,ENC1,FCHO2,FOXD1,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,MAP1B,MARVELD2,MAST4,MCCC2,MRPS27,MRPS36,NAIP,OCLN,PIK3R1,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AG.3909.01A	5	66448445	67576339	17	-0.4229	NEUTRAL	NA	3	"CD180,MAST4,PIK3R1"
TCGA.AG.A02X.01A	5	66462278	180686963	5388	-0.3093	NEUTRAL	NA	650	Too-Many
TCGA.AA.3967.01A	5	66478644	68863961	112	0.0954	NEUTRAL	NA	15	"AK6,CCDC125,CCNB1,CD180,CDK7,CENPH,GTF2H2C,GTF2H2C_2,MARVELD2,MRPS36,OCLN,PIK3R1,RAD17,SLC30A5,TAF9"
TCGA.AG.A00C.01A	5	66478644	69729971	124	0.3002	NEUTRAL	NA	19	"AK6,CCDC125,CCNB1,CD180,CDK7,CENPH,GTF2H2C,GTF2H2C_2,MARVELD2,MRPS36,OCLN,PIK3R1,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.EI.7002	5	66666738	66823965	58	0.055	NEUTRAL	NA	0	None
TCGA.D5.5539	5	67193519	74540396	1778	-0.4085	NEUTRAL	NA	43	"AK6,ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,CARTPT,CCDC125,CCNB1,CDK7,CENPH,ENC1,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,NSA2,OCLN,PIK3R1,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AA.3982	5	67278916	75234581	1920	0.0534	NEUTRAL	NA	48	"AK6,ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,CARTPT,CCDC125,CCNB1,CDK7,CENPH,COL4A3BP,ENC1,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,HMGCR,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,NSA2,OCLN,PIK3R1,POC5,POLK,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AA.3941	5	67294525	75235329	1915	0.1209	NEUTRAL	NA	48	"AK6,ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,CARTPT,CCDC125,CCNB1,CDK7,CENPH,COL4A3BP,ENC1,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,HMGCR,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,NSA2,OCLN,PIK3R1,POC5,POLK,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AA.A01Q.01A	5	67569734	67590965	11	-0.47	NEUTRAL	NA	1	PIK3R1
TCGA.AA.A01C.01A	5	67575381	70939583	196	-0.2503	NEUTRAL	NA	22	"AK6,BDP1,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MCCC2,MRPS36,NAIP,OCLN,PIK3R1,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.AG.A01J.01A	5	67575381	72864027	279	-0.2801	NEUTRAL	NA	35	"AK6,ANKRA2,BDP1,BTF3,CARTPT,CCDC125,CCNB1,CDK7,CENPH,FCHO2,FOXD1,GTF2H2,GTF2H2C,GTF2H2C_2,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,OCLN,PIK3R1,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AA.A017.01A	5	67576339	71638730	228	-0.3304	NEUTRAL	NA	26	"AK6,BDP1,CARTPT,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,OCLN,PIK3R1,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.AG.A023.01A	5	67584515	70759814	129	-0.3381	NEUTRAL	NA	21	"AK6,BDP1,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MRPS36,NAIP,OCLN,PIK3R1,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.AA.A01Q.01A	5	67591950	134345023	2114	0.0553	NEUTRAL	NA	257	Too-Many
TCGA.AG.A01W.01A	5	67620272	67628949	9	0.0407	NEUTRAL	NA	0	None
TCGA.AA.3502	5	67628885	180692832	34478	0.0048	NEUTRAL	NA	647	Too-Many
TCGA.F4.6808	5	68103204	78784146	2864	0.0538	NEUTRAL	NA	69	"AGGF1,AK6,ANKDD1B,ANKRA2,ANKRD31,AP3B1,ARHGEF28,ARSB,BDP1,BHMT,BHMT2,BTF3,CARTPT,CCDC125,CCNB1,CDK7,CENPH,COL4A3BP,CRHBP,DMGDH,ENC1,F2R,F2RL1,F2RL2,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,NSA2,OCLN,OTP,PDE8B,POC5,POLK,PTCD2,RAD17,S100Z,SCAMP1,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,SV2C,TAF9,TBCA,TMEM171,TMEM174,TNPO1,UTP15,WDR41,ZBED3,ZNF366"
TCGA.G4.6315	5	68187152	71846720	502	0.0131	NEUTRAL	NA	26	"AK6,BDP1,CARTPT,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,OCLN,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9,ZNF366"
TCGA.AZ.4682	5	68289144	180692832	34260	0.0013	NEUTRAL	NA	647	Too-Many
TCGA.AG.3909.01A	5	68396582	68410188	7	-0.4333	NEUTRAL	NA	1	SLC30A5
TCGA.AG.3611.01A	5	68396582	68505514	32	-0.251	NEUTRAL	NA	3	"CCNB1,CENPH,SLC30A5"
TCGA.AG.3906.01A	5	68396582	68715193	78	0.2008	NEUTRAL	NA	10	"AK6,CCDC125,CCNB1,CDK7,CENPH,MARVELD2,MRPS36,RAD17,SLC30A5,TAF9"
TCGA.AG.A00Y.01A	5	68396582	69718636	101	0.3236	NEUTRAL	NA	17	"AK6,CCDC125,CCNB1,CDK7,CENPH,GTF2H2C,GTF2H2C_2,MARVELD2,MRPS36,OCLN,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.AA.3930.01A	5	68396582	70754394	118	0.3453	NEUTRAL	NA	20	"AK6,BDP1,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MRPS36,NAIP,OCLN,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.AG.3891.01A	5	68396582	70860549	164	0.191	NEUTRAL	NA	20	"AK6,BDP1,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MRPS36,NAIP,OCLN,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.AA.3509.01A	5	68396582	70900142	169	-0.3519	NEUTRAL	NA	21	"AK6,BDP1,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MCCC2,MRPS36,NAIP,OCLN,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.A6.3810.01A	5	68398821	70944873	183	-0.4685	NEUTRAL	NA	21	"AK6,BDP1,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MCCC2,MRPS36,NAIP,OCLN,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.AA.A00F.01A	5	68410188	68463706	12	-0.3314	NEUTRAL	NA	2	"CCNB1,SLC30A5"
TCGA.AA.A00N.01A	5	68410188	68485440	18	-0.2657	NEUTRAL	NA	3	"CCNB1,CENPH,SLC30A5"
TCGA.AG.3909.01A	5	68411013	68462999	10	0.1957	NEUTRAL	NA	2	"CCNB1,SLC30A5"
TCGA.AG.3909.01A	5	68463706	68471197	5	-0.448	NEUTRAL	NA	1	CCNB1
TCGA.AA.A00L.01A	5	68463706	68524010	18	0.1094	NEUTRAL	NA	3	"CCNB1,CENPH,MRPS36"
TCGA.AA.A00F.01A	5	68467060	68524942	17	0.1099	NEUTRAL	NA	3	"CCNB1,CENPH,MRPS36"
TCGA.AG.3909.01A	5	68513588	68524010	3	-0.2974	NEUTRAL	NA	1	MRPS36
TCGA.AG.3611.01A	5	68513588	68588005	19	0.0375	NEUTRAL	NA	3	"CCDC125,CDK7,MRPS36"
TCGA.AA.A00N.01A	5	68513588	68609751	26	0.0198	NEUTRAL	NA	3	"CCDC125,CDK7,MRPS36"
TCGA.AG.3909.01A	5	68524942	68609751	22	0.3144	NEUTRAL	NA	3	"CCDC125,CDK7,MRPS36"
TCGA.AA.A00L.01A	5	68524942	89769604	711	-0.4485	NEUTRAL	NA	98	"ACOT12,AGGF1,AK6,ANKDD1B,ANKRA2,ANKRD31,ANKRD34B,AP3B1,ARHGEF28,ARSB,ATG10,ATP6AP1L,BDP1,BHMT,BHMT2,BTF3,CARTPT,CCDC125,CCNH,CDK7,CETN3,CKMT2,CMYA5,COL4A3BP,COX7C,CRHBP,DHFR,DMGDH,EDIL3,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HAPLN1,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,MAP1B,MARVELD2,MBLAC2,MCCC2,MEF2C,MRPS27,MRPS36,MSH3,MTRNR2L2,MTX3,NAIP,NSA2,OCLN,OTP,PAPD4,PDE8B,POC5,POLK,PTCD2,RAD17,RASA1,RASGRF2,RPS23,S100Z,SCAMP1,SERF1A,SERF1B,SERINC5,SMN1,SMN2,SPZ1,SSBP2,SV2C,TAF9,TBCA,THBS4,TMEM161B,TMEM167A,TMEM171,TMEM174,TNPO1,UTP15,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16,ZNF366"
TCGA.AA.A00F.01A	5	68530769	68599614	18	-0.3156	NEUTRAL	NA	2	"CCDC125,CDK7"
TCGA.EI.7002	5	68555363	70803383	48	0.0955	NEUTRAL	NA	16	"AK6,BDP1,CCDC125,CDK7,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,NAIP,OCLN,RAD17,SERF1A,SERF1B,SMN1,SMN2,TAF9"
TCGA.CM.5348	5	68567950	180692832	34214	0.0891	NEUTRAL	NA	643	Too-Many
TCGA.AG.3611.01A	5	68590599	80550784	521	-0.3966	NEUTRAL	NA	78	"AGGF1,AK6,ANKDD1B,ANKRA2,ANKRD31,ANKRD34B,AP3B1,ARHGEF28,ARSB,BDP1,BHMT,BHMT2,BTF3,CARTPT,CCDC125,CKMT2,CMYA5,COL4A3BP,CRHBP,DHFR,DMGDH,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,MAP1B,MARVELD2,MCCC2,MRPS27,MSH3,MTRNR2L2,MTX3,NAIP,NSA2,OCLN,OTP,PAPD4,PDE8B,POC5,POLK,PTCD2,RAD17,RASGRF2,S100Z,SCAMP1,SERF1A,SERF1B,SERINC5,SMN1,SMN2,SPZ1,SV2C,TAF9,TBCA,THBS4,TMEM171,TMEM174,TNPO1,UTP15,WDR41,ZBED3,ZFYVE16,ZNF366"
TCGA.AA.A024.01A	5	68602590	70357457	83	0.3271	NEUTRAL	NA	14	"AK6,CCDC125,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,NAIP,OCLN,RAD17,SERF1A,SERF1B,SMN1,SMN2,TAF9"
TCGA.AA.A00F.01A	5	68602590	70900142	43	0.0939	NEUTRAL	NA	16	"AK6,BDP1,CCDC125,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MCCC2,NAIP,OCLN,RAD17,SERF1A,SERF1B,SMN1,SMN2,TAF9"
TCGA.AA.A010.01A	5	68681850	68737321	14	0.1687	NEUTRAL	NA	2	"MARVELD2,RAD17"
TCGA.AA.3870	5	68788260	70704076	6	-0.4829	NEUTRAL	NA	9	"GTF2H2,GTF2H2C,GTF2H2C_2,NAIP,OCLN,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AZ.4684.01A	5	68809738	69716046	15	-0.2803	NEUTRAL	NA	7	"GTF2H2C,GTF2H2C_2,OCLN,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AG.3909.01A	5	68830483	70406027	44	0.3319	NEUTRAL	NA	9	"GTF2H2,GTF2H2C,GTF2H2C_2,NAIP,OCLN,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AA.A00N.01A	5	68840704	70805274	42	-0.2484	NEUTRAL	NA	10	"BDP1,GTF2H2,GTF2H2C,GTF2H2C_2,NAIP,OCLN,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AG.3906.01A	5	68847305	70811869	69	0.0552	NEUTRAL	NA	10	"BDP1,GTF2H2,GTF2H2C,GTF2H2C_2,NAIP,OCLN,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AA.A010.01A	5	68849360	70247696	23	0.0911	NEUTRAL	NA	7	"GTF2H2C,GTF2H2C_2,OCLN,SERF1A,SERF1B,SMN1,SMN2"
TCGA.CM.6165.01A	5	69337349	70372102	13	0.144	NEUTRAL	NA	6	"GTF2H2,NAIP,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AG.A00C.01A	5	69730703	70798374	37	0.0344	NEUTRAL	NA	7	"BDP1,GTF2H2,NAIP,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AG.A00Y.01A	5	69730703	131066565	2087	-0.2236	NEUTRAL	NA	201	Too-Many
TCGA.CK.5914.01A	5	69741238	70810722	43	-0.3408	NEUTRAL	NA	7	"BDP1,GTF2H2,NAIP,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AG.A008.01A	5	70357040	76330196	376	0.1307	NEUTRAL	NA	37	"AGGF1,ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,CARTPT,COL4A3BP,CRHBP,ENC1,F2R,F2RL1,F2RL2,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,HEXB,HMGCR,IQGAP2,MAP1B,MCCC2,MRPS27,NSA2,POC5,POLK,PTCD2,S100Z,SV2C,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AA.A024.01A	5	70370003	171785726	4690	-0.0247	NEUTRAL	NA	524	Too-Many
TCGA.DM.A28M.01A	5	70378552	127466746	1996	0.3445	NEUTRAL	NA	184	Too-Many
TCGA.AA.3967.01A	5	70388857	70860549	43	-0.0235	NEUTRAL	NA	1	BDP1
TCGA.AG.4009.01A	5	70398668	70800431	21	-0.1602	NEUTRAL	NA	1	BDP1
TCGA.CM.6165.01A	5	70398668	140552370	3192	0.0713	NEUTRAL	NA	329	Too-Many
TCGA.AG.A015.01A	5	70405019	175516397	4692	-0.1392	NEUTRAL	NA	545	Too-Many
TCGA.AG.3909.01A	5	70422760	70766191	8	-0.3813	NEUTRAL	NA	1	BDP1
TCGA.AA.3939.01A	5	70422760	140186741	3109	0.0084	NEUTRAL	NA	311	Too-Many
TCGA.CM.4744.01A	5	70422760	140221245	3137	-0.0461	NEUTRAL	NA	315	Too-Many
TCGA.AY.A71X	5	70671938	93065682	6128	0.0286	NEUTRAL	NA	88	"ACOT12,ADGRV1,AGGF1,ANKDD1B,ANKRA2,ANKRD31,ANKRD34B,AP3B1,ARHGEF28,ARRDC3,ARSB,ATG10,ATP6AP1L,BDP1,BHMT,BHMT2,BTF3,CARTPT,CCNH,CETN3,CKMT2,CMYA5,COL4A3BP,COX7C,CRHBP,DHFR,DMGDH,EDIL3,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FAM172A,FCHO2,FOXD1,GCNT4,GFM2,HAPLN1,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,LYSMD3,MAP1B,MBLAC2,MCCC2,MEF2C,MRPS27,MSH3,MTRNR2L2,MTX3,NR2F1,NSA2,OTP,PAPD4,PDE8B,POC5,POLK,POLR3G,PTCD2,RASA1,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM161B,TMEM167A,TMEM171,TMEM174,TNPO1,UTP15,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16,ZNF366"
TCGA.CL.5918	5	70690420	74892001	1349	0.0137	NEUTRAL	NA	26	"ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,CARTPT,COL4A3BP,ENC1,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,MAP1B,MCCC2,MRPS27,NSA2,POLK,PTCD2,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.G5.6641	5	70704076	180692832	34112	0.0326	NEUTRAL	NA	628	Too-Many
TCGA.AA.3870	5	70704358	70792198	17	0.0384	NEUTRAL	NA	1	BDP1
TCGA.AA.3850	5	70710446	75239399	1486	0.07305	NEUTRAL	NA	28	"ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,CARTPT,COL4A3BP,ENC1,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,MAP1B,MCCC2,MRPS27,NSA2,POC5,POLK,PTCD2,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AG.A01W.01A	5	70743094	124007086	1931	-0.1744	NEUTRAL	NA	173	Too-Many
TCGA.AA.3930.01A	5	70757593	79855815	620	0.0234	NEUTRAL	NA	59	"AGGF1,ANKDD1B,ANKRA2,ANKRD31,ANKRD34B,AP3B1,ARHGEF28,ARSB,BDP1,BHMT,BHMT2,BTF3,CARTPT,CMYA5,COL4A3BP,CRHBP,DMGDH,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,MAP1B,MCCC2,MRPS27,MTX3,NSA2,OTP,PAPD4,PDE8B,POC5,POLK,PTCD2,S100Z,SCAMP1,SERINC5,SPZ1,SV2C,TBCA,THBS4,TMEM171,TMEM174,TNPO1,UTP15,WDR41,ZBED3,ZFYVE16,ZNF366"
TCGA.AG.3909.01A	5	70779620	70805274	10	0.1369	NEUTRAL	NA	1	BDP1
TCGA.AG.A023.01A	5	70779620	70941985	44	-0.3076	NEUTRAL	NA	2	"BDP1,MCCC2"
TCGA.AG.3909.01A	5	70806091	70811869	5	-0.3439	NEUTRAL	NA	1	BDP1
TCGA.AG.3906.01A	5	70840152	70845210	4	0.2992	NEUTRAL	NA	1	BDP1
TCGA.AA.A010.01A	5	70844439	70860549	7	-0.4728	NEUTRAL	NA	1	BDP1
TCGA.AG.3906.01A	5	70848962	70892063	7	-0.043	NEUTRAL	NA	2	"BDP1,MCCC2"
TCGA.AA.3870	5	70884501	180692832	34136	-0.0099	NEUTRAL	NA	627	Too-Many
TCGA.AG.4009.01A	5	70888700	71755945	50	0.0485	NEUTRAL	NA	6	"CARTPT,MAP1B,MCCC2,MRPS27,PTCD2,ZNF366"
TCGA.AA.3967.01A	5	70888700	76251467	321	-0.3075	NEUTRAL	NA	34	"ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BTF3,CARTPT,COL4A3BP,CRHBP,ENC1,F2R,F2RL1,F2RL2,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,MAP1B,MCCC2,MRPS27,NSA2,POC5,POLK,PTCD2,S100Z,SV2C,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AF.3914.01A	5	70888700	90459560	886	-0.1017	NEUTRAL	NA	84	"ACOT12,ADGRV1,AGGF1,ANKDD1B,ANKRA2,ANKRD31,ANKRD34B,AP3B1,ARHGEF28,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,BTF3,CARTPT,CCNH,CETN3,CKMT2,CMYA5,COL4A3BP,COX7C,CRHBP,DHFR,DMGDH,EDIL3,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HAPLN1,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,LYSMD3,MAP1B,MBLAC2,MCCC2,MEF2C,MRPS27,MSH3,MTRNR2L2,MTX3,NSA2,OTP,PAPD4,PDE8B,POC5,POLK,POLR3G,PTCD2,RASA1,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM161B,TMEM167A,TMEM171,TMEM174,TNPO1,UTP15,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16,ZNF366"
TCGA.AG.3891.01A	5	70888700	90459560	886	-0.144	NEUTRAL	NA	84	"ACOT12,ADGRV1,AGGF1,ANKDD1B,ANKRA2,ANKRD31,ANKRD34B,AP3B1,ARHGEF28,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,BTF3,CARTPT,CCNH,CETN3,CKMT2,CMYA5,COL4A3BP,COX7C,CRHBP,DHFR,DMGDH,EDIL3,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HAPLN1,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,LYSMD3,MAP1B,MBLAC2,MCCC2,MEF2C,MRPS27,MSH3,MTRNR2L2,MTX3,NSA2,OTP,PAPD4,PDE8B,POC5,POLK,POLR3G,PTCD2,RASA1,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM161B,TMEM167A,TMEM171,TMEM174,TNPO1,UTP15,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16,ZNF366"
TCGA.AA.3862.01A	5	70892063	137517069	2668	0.2945	NEUTRAL	NA	260	Too-Many
TCGA.AG.3906.01A	5	70895439	70922430	4	-0.4491	NEUTRAL	NA	1	MCCC2
TCGA.AG.3909.01A	5	70900142	72743485	98	0.0522	NEUTRAL	NA	11	"CARTPT,FCHO2,FOXD1,MAP1B,MCCC2,MRPS27,PTCD2,TMEM171,TMEM174,TNPO1,ZNF366"
TCGA.AA.A00F.01A	5	70922430	71755945	43	-0.3088	NEUTRAL	NA	6	"CARTPT,MAP1B,MCCC2,MRPS27,PTCD2,ZNF366"
TCGA.AA.A00N.01A	5	70922430	72850649	110	0.017	NEUTRAL	NA	13	"ANKRA2,BTF3,CARTPT,FCHO2,FOXD1,MAP1B,MCCC2,MRPS27,PTCD2,TMEM171,TMEM174,TNPO1,ZNF366"
TCGA.AA.3509.01A	5	70922430	72872721	119	-0.0255	NEUTRAL	NA	14	"ANKRA2,BTF3,CARTPT,FCHO2,FOXD1,MAP1B,MCCC2,MRPS27,PTCD2,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AG.A00C.01A	5	70922430	76249374	319	-0.0926	NEUTRAL	NA	34	"ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BTF3,CARTPT,COL4A3BP,CRHBP,ENC1,F2R,F2RL1,F2RL2,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,MAP1B,MCCC2,MRPS27,NSA2,POC5,POLK,PTCD2,S100Z,SV2C,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AG.3906.01A	5	70927891	72144165	45	-0.0254	NEUTRAL	NA	7	"CARTPT,MAP1B,MCCC2,MRPS27,PTCD2,TNPO1,ZNF366"
TCGA.AA.A00D.01A	5	70936770	72875114	92	-0.5029	NEUTRAL	NA	14	"ANKRA2,BTF3,CARTPT,FCHO2,FOXD1,MAP1B,MCCC2,MRPS27,PTCD2,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.CK.5914.01A	5	70939583	71492281	15	-0.1186	NEUTRAL	NA	3	"CARTPT,MAP1B,MCCC2"
TCGA.AA.A01C.01A	5	70941985	71516688	16	0.1512	NEUTRAL	NA	4	"CARTPT,MAP1B,MCCC2,MRPS27"
TCGA.AG.A023.01A	5	70944873	74325054	192	0.0281	NEUTRAL	NA	21	"ANKRA2,ARHGEF28,BTF3,CARTPT,ENC1,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,MAP1B,MCCC2,MRPS27,NSA2,PTCD2,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.A6.3810.01A	5	70945849	134678953	2510	-0.1789	NEUTRAL	NA	239	Too-Many
TCGA.AG.3726	5	71033591	86386564	4685	0.0099	NEUTRAL	NA	73	"ACOT12,AGGF1,ANKDD1B,ANKRA2,ANKRD31,ANKRD34B,AP3B1,ARHGEF28,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,BTF3,CKMT2,CMYA5,COL4A3BP,COX7C,CRHBP,DHFR,DMGDH,EDIL3,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HAPLN1,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,MAP1B,MRPS27,MSH3,MTRNR2L2,MTX3,NSA2,OTP,PAPD4,PDE8B,POC5,POLK,PTCD2,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM167A,TMEM171,TMEM174,TNPO1,UTP15,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16,ZNF366"
TCGA.D5.6535	5	71462064	71755192	73	-0.4073	NEUTRAL	NA	4	"MAP1B,MRPS27,PTCD2,ZNF366"
TCGA.AA.3494	5	71569324	76092686	1606	-0.4789	NEUTRAL	NA	28	"ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BTF3,COL4A3BP,ENC1,F2R,F2RL2,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,MRPS27,NSA2,POC5,POLK,PTCD2,SV2C,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.AA.A01C.01A	5	71591288	76326555	294	0.0587	NEUTRAL	NA	32	"AGGF1,ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BTF3,COL4A3BP,CRHBP,ENC1,F2R,F2RL1,F2RL2,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,MRPS27,NSA2,POC5,POLK,PTCD2,S100Z,SV2C,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.A6.3808.01A	5	71622401	76326555	296	-0.0377	NEUTRAL	NA	31	"AGGF1,ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BTF3,COL4A3BP,CRHBP,ENC1,F2R,F2RL1,F2RL2,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,NSA2,POC5,POLK,PTCD2,S100Z,SV2C,TMEM171,TMEM174,TNPO1,UTP15,ZNF366"
TCGA.CK.5914.01A	5	71638730	72469837	61	0.0944	NEUTRAL	NA	6	"FCHO2,PTCD2,TMEM171,TMEM174,TNPO1,ZNF366"
TCGA.AA.A017.01A	5	71648446	96073516	989	-0.0017	NEUTRAL	NA	98	"ACOT12,ADGRV1,AGGF1,ANKDD1B,ANKRA2,ANKRD31,ANKRD32,ANKRD34B,AP3B1,ARHGEF28,ARRDC3,ARSB,ARSK,ATG10,ATP6AP1L,BHMT,BHMT2,BTF3,CAST,CCNH,CETN3,CKMT2,CMYA5,COL4A3BP,COX7C,CRHBP,DHFR,DMGDH,EDIL3,ELL2,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FAM172A,FAM81B,FCHO2,FOXD1,GCNT4,GFM2,GLRX,GPR150,HAPLN1,HEXB,HMGCR,HOMER1,IQGAP2,JMY,KIAA0825,LHFPL2,LYSMD3,MBLAC2,MCTP1,MEF2C,MSH3,MTRNR2L2,MTX3,NR2F1,NSA2,OTP,PAPD4,PCSK1,PDE8B,POC5,POLK,POLR3G,POU5F2,PTCD2,RASA1,RASGRF2,RFESD,RHOBTB3,RPS23,S100Z,SCAMP1,SERINC5,SPATA9,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM161B,TMEM167A,TMEM171,TMEM174,TNPO1,TTC37,UTP15,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16,ZNF366"
TCGA.AA.A02E.01A	5	71653999	139908941	2731	-0.1383	NEUTRAL	NA	289	Too-Many
TCGA.F5.6465	5	71745390	180692832	33856	-0.0073	NEUTRAL	NA	622	Too-Many
TCGA.D5.6535	5	71757893	82248663	3413	0.0266	NEUTRAL	NA	64	"ACOT12,AGGF1,ANKDD1B,ANKRA2,ANKRD31,ANKRD34B,AP3B1,ARHGEF28,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,BTF3,CKMT2,CMYA5,COL4A3BP,CRHBP,DHFR,DMGDH,ENC1,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,NSA2,OTP,PAPD4,PDE8B,POC5,POLK,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM171,TMEM174,TNPO1,UTP15,WDR41,ZBED3,ZCCHC9,ZFYVE16,ZNF366"
TCGA.G4.6315	5	71850559	180692832	33809	0.0096	NEUTRAL	NA	621	Too-Many
TCGA.EI.7002	5	72071233	73317201	408	-0.0003	NEUTRAL	NA	9	"ANKRA2,ARHGEF28,BTF3,FCHO2,FOXD1,TMEM171,TMEM174,TNPO1,UTP15"
TCGA.F5.6863	5	72087479	75580686	1227	0.0258	NEUTRAL	NA	22	"ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BTF3,COL4A3BP,ENC1,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,NSA2,POC5,POLK,SV2C,TMEM171,TMEM174,TNPO1,UTP15"
TCGA.AA.A00F.01A	5	72144165	72161375	5	0.075	NEUTRAL	NA	1	TNPO1
TCGA.AG.4009.01A	5	72161375	72383820	39	-0.265	NEUTRAL	NA	2	"FCHO2,TNPO1"
TCGA.AA.A00F.01A	5	72168430	72469837	23	-0.2512	NEUTRAL	NA	4	"FCHO2,TMEM171,TMEM174,TNPO1"
TCGA.AG.3906.01A	5	72171393	74882766	195	-0.0818	NEUTRAL	NA	19	"ANKRA2,ANKRD31,ARHGEF28,BTF3,COL4A3BP,ENC1,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,HEXB,HMGCR,NSA2,POLK,TMEM171,TMEM174,TNPO1,UTP15"
TCGA.AA.A010.01A	5	72178844	72312987	20	-0.1847	NEUTRAL	NA	2	"FCHO2,TNPO1"
TCGA.AA.3861.01A	5	72178844	131923202	2153	0.1005	NEUTRAL	NA	199	Too-Many
TCGA.AG.4009.01A	5	72469034	76249803	223	-0.0772	NEUTRAL	NA	25	"ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BTF3,COL4A3BP,CRHBP,ENC1,F2R,F2RL1,F2RL2,FAM169A,FOXD1,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,NSA2,POC5,POLK,S100Z,SV2C,TMEM174,UTP15"
TCGA.AA.A00F.01A	5	72743485	72800939	7	0.1313	NEUTRAL	NA	2	"BTF3,FOXD1"
TCGA.AA.A00F.01A	5	72848562	73072294	20	-0.2421	NEUTRAL	NA	3	"ANKRA2,ARHGEF28,UTP15"
TCGA.AG.3909.01A	5	72848562	73190211	46	0.3404	NEUTRAL	NA	3	"ANKRA2,ARHGEF28,UTP15"
TCGA.CK.5914.01A	5	72872721	73178280	27	0.1977	NEUTRAL	NA	2	"ARHGEF28,UTP15"
TCGA.AG.A01J.01A	5	72872721	132223486	2048	0.0884	NEUTRAL	NA	203	Too-Many
TCGA.AA.A00D.01A	5	72875685	73989407	12	0.0207	NEUTRAL	NA	4	"ARHGEF28,ENC1,HEXB,UTP15"
TCGA.AA.3509.01A	5	72980594	74032538	53	0.034	NEUTRAL	NA	4	"ARHGEF28,ENC1,GFM2,HEXB"
TCGA.AA.A010.01A	5	73142045	73168777	10	-0.2516	NEUTRAL	NA	1	ARHGEF28
TCGA.AA.A00F.01A	5	73153872	73992794	10	0.124	NEUTRAL	NA	3	"ARHGEF28,ENC1,HEXB"
TCGA.D5.6932	5	73935405	97991502	6224	0.0703	NEUTRAL	NA	92	"ACOT12,ADGRV1,AGGF1,ANKDD1B,ANKRD31,ANKRD32,ANKRD34B,AP3B1,ARRDC3,ARSB,ARSK,ATG10,ATP6AP1L,BHMT,BHMT2,CAST,CCNH,CETN3,CKMT2,CMYA5,COL4A3BP,COX7C,CRHBP,DHFR,DMGDH,EDIL3,ELL2,ENC1,ERAP1,ERAP2,F2R,F2RL1,F2RL2,FAM151B,FAM169A,FAM172A,FAM81B,GCNT4,GFM2,GLRX,GPR150,HAPLN1,HEXB,HMGCR,HOMER1,IQGAP2,JMY,KIAA0825,LHFPL2,LIX1,LNPEP,LYSMD3,MBLAC2,MCTP1,MEF2C,MSH3,MTRNR2L2,MTX3,NR2F1,NSA2,OTP,PAPD4,PCSK1,PDE8B,POC5,POLK,POLR3G,POU5F2,RASA1,RASGRF2,RFESD,RHOBTB3,RIOK2,RPS23,S100Z,SCAMP1,SERINC5,SPATA9,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM161B,TMEM167A,TTC37,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16"
TCGA.AA.A02H.01A	5	73989407	125912723	1605	-0.0951	NEUTRAL	NA	158	Too-Many
TCGA.AA.A00D.01A	5	73992485	76249803	131	-0.43	NEUTRAL	NA	18	"ANKDD1B,ANKRD31,COL4A3BP,CRHBP,F2R,F2RL1,F2RL2,FAM169A,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,NSA2,POC5,POLK,S100Z,SV2C"
TCGA.AG.3909.01A	5	74000992	74063090	28	0.3278	NEUTRAL	NA	3	"GFM2,HEXB,NSA2"
TCGA.AA.A00F.01A	5	74000992	76249803	123	-0.3138	NEUTRAL	NA	18	"ANKDD1B,ANKRD31,COL4A3BP,CRHBP,F2R,F2RL1,F2RL2,FAM169A,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,NSA2,POC5,POLK,S100Z,SV2C"
TCGA.CK.5914.01A	5	74009291	74014595	5	0.1108	NEUTRAL	NA	1	HEXB
TCGA.AA.A010.01A	5	74009291	74034096	15	-0.2342	NEUTRAL	NA	2	"GFM2,HEXB"
TCGA.AA.A010.01A	5	74035767	74059448	11	0.3208	NEUTRAL	NA	1	GFM2
TCGA.CK.5914.01A	5	74054622	74100270	15	-0.472	NEUTRAL	NA	3	"FAM169A,GFM2,NSA2"
TCGA.AA.3509.01A	5	74059448	86637023	547	0.0931	NEUTRAL	NA	59	"ACOT12,AGGF1,ANKDD1B,ANKRD31,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CKMT2,CMYA5,COL4A3BP,COX7C,CRHBP,DHFR,DMGDH,EDIL3,F2R,F2RL1,F2RL2,FAM151B,FAM169A,GCNT4,GFM2,HAPLN1,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,NSA2,OTP,PAPD4,PDE8B,POC5,POLK,RASA1,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM167A,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16"
TCGA.AG.3909.01A	5	74064734	74325054	18	0.0136	NEUTRAL	NA	3	"FAM169A,GCNT4,NSA2"
TCGA.AA.A010.01A	5	74324469	75008629	59	0.3	NEUTRAL	NA	7	"ANKDD1B,ANKRD31,COL4A3BP,GCNT4,HMGCR,POC5,POLK"
TCGA.D5.5539	5	74562028	85685883	3331	0.2904	NEUTRAL	NA	52	"ACOT12,AGGF1,ANKDD1B,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CKMT2,CMYA5,COL4A3BP,CRHBP,DHFR,DMGDH,EDIL3,F2R,F2RL1,F2RL2,FAM151B,HAPLN1,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,POC5,POLK,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM167A,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16"
TCGA.AG.A023.01A	5	74641351	79058837	281	0.0248	NEUTRAL	NA	29	"AGGF1,ANKDD1B,AP3B1,ARSB,BHMT,BHMT2,CMYA5,COL4A3BP,CRHBP,DMGDH,F2R,F2RL1,F2RL2,HMGCR,HOMER1,IQGAP2,JMY,LHFPL2,OTP,PAPD4,PDE8B,POC5,POLK,S100Z,SCAMP1,SV2C,TBCA,WDR41,ZBED3"
TCGA.AA.A00N.01A	5	74646602	74654435	5	-0.2941	NEUTRAL	NA	1	HMGCR
TCGA.CK.5914.01A	5	74650281	74986170	43	0.0209	NEUTRAL	NA	5	"ANKDD1B,COL4A3BP,HMGCR,POC5,POLK"
TCGA.AG.3909.01A	5	74650281	75505530	52	0.1396	NEUTRAL	NA	6	"ANKDD1B,COL4A3BP,HMGCR,POC5,POLK,SV2C"
TCGA.AA.3844	5	75235329	75296901	38	0.0062	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	75294345	84196111	2739	0.0266	NEUTRAL	NA	47	"ACOT12,AGGF1,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CKMT2,CMYA5,CRHBP,DHFR,DMGDH,EDIL3,F2R,F2RL1,F2RL2,FAM151B,HAPLN1,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM167A,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16"
TCGA.AA.3982	5	75296901	75349079	28	0.1186	NEUTRAL	NA	0	None
TCGA.AA.3941	5	75302628	75477214	85	-0.1489	NEUTRAL	NA	1	SV2C
TCGA.AA.3850	5	75304105	75550324	130	-0.20425	NEUTRAL	NA	1	SV2C
TCGA.AA.3844	5	75349079	75386930	11	-0.2148	NEUTRAL	NA	1	SV2C
TCGA.AA.3982	5	75359578	75922503	270	0.0591	NEUTRAL	NA	3	"F2RL2,IQGAP2,SV2C"
TCGA.CK.5914.01A	5	75427528	75998256	49	0.1496	NEUTRAL	NA	3	"F2RL2,IQGAP2,SV2C"
TCGA.AA.3941	5	75477662	75922503	211	0.24	NEUTRAL	NA	3	"F2RL2,IQGAP2,SV2C"
TCGA.AA.A010.01A	5	75505530	76254549	57	0.0448	NEUTRAL	NA	7	"CRHBP,F2R,F2RL1,F2RL2,IQGAP2,S100Z,SV2C"
TCGA.AA.3850	5	75552046	75924973	166	0.16205	NEUTRAL	NA	3	"F2RL2,IQGAP2,SV2C"
TCGA.AG.3909.01A	5	75596502	75866347	6	-0.0906	NEUTRAL	NA	2	"IQGAP2,SV2C"
TCGA.AA.A00N.01A	5	75699314	75885388	7	-0.0349	NEUTRAL	NA	1	IQGAP2
TCGA.AA.3844	5	75924973	75928576	9	-0.3271	NEUTRAL	NA	1	IQGAP2
TCGA.AA.3941	5	75927026	75953912	25	-0.1477	NEUTRAL	NA	1	IQGAP2
TCGA.AA.3982	5	75928451	76809059	303	0.106	NEUTRAL	NA	9	"AGGF1,CRHBP,F2R,F2RL1,IQGAP2,PDE8B,S100Z,WDR41,ZBED3"
TCGA.AA.3850	5	75928451	80754433	1486	0.22275	NEUTRAL	NA	37	"ACOT12,AGGF1,ANKRD34B,AP3B1,ARSB,BHMT,BHMT2,CKMT2,CMYA5,CRHBP,DHFR,DMGDH,F2R,F2RL1,FAM151B,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,RASGRF2,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,TBCA,THBS4,WDR41,ZBED3,ZCCHC9,ZFYVE16"
TCGA.AA.3941	5	75957470	80754433	1465	0.2405	NEUTRAL	NA	37	"ACOT12,AGGF1,ANKRD34B,AP3B1,ARSB,BHMT,BHMT2,CKMT2,CMYA5,CRHBP,DHFR,DMGDH,F2R,F2RL1,FAM151B,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,RASGRF2,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,TBCA,THBS4,WDR41,ZBED3,ZCCHC9,ZFYVE16"
TCGA.AA.A00N.01A	5	75969721	75989135	6	0.1716	NEUTRAL	NA	1	IQGAP2
TCGA.AG.3909.01A	5	75989135	76249374	12	-0.0065	NEUTRAL	NA	5	"CRHBP,F2R,F2RL1,IQGAP2,S100Z"
TCGA.AA.A00N.01A	5	75991247	76249803	14	-0.3624	NEUTRAL	NA	5	"CRHBP,F2R,F2RL1,IQGAP2,S100Z"
TCGA.CK.5914.01A	5	76002975	76249803	9	-0.5066	NEUTRAL	NA	5	"CRHBP,F2R,F2RL1,IQGAP2,S100Z"
TCGA.AA.3494	5	76097275	97045120	5256	0.0043	NEUTRAL	NA	76	"ACOT12,ADGRV1,AGGF1,ANKRD32,ANKRD34B,AP3B1,ARRDC3,ARSB,ARSK,ATG10,ATP6AP1L,BHMT,BHMT2,CAST,CCNH,CETN3,CKMT2,CMYA5,COX7C,CRHBP,DHFR,DMGDH,EDIL3,ELL2,ERAP1,ERAP2,F2RL1,FAM151B,FAM172A,FAM81B,GLRX,GPR150,HAPLN1,HOMER1,JMY,KIAA0825,LHFPL2,LIX1,LNPEP,LYSMD3,MBLAC2,MCTP1,MEF2C,MSH3,MTRNR2L2,MTX3,NR2F1,OTP,PAPD4,PCSK1,PDE8B,POLR3G,POU5F2,RASA1,RASGRF2,RFESD,RHOBTB3,RIOK2,RPS23,S100Z,SCAMP1,SERINC5,SPATA9,SPZ1,SSBP2,TBCA,THBS4,TMEM161B,TMEM167A,TTC37,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16"
TCGA.AA.A00F.01A	5	76251467	76358895	18	0.2366	NEUTRAL	NA	2	"AGGF1,CRHBP"
TCGA.AA.A00D.01A	5	76251467	76621327	20	0.0406	NEUTRAL	NA	4	"AGGF1,CRHBP,PDE8B,ZBED3"
TCGA.AA.3967.01A	5	76254549	76373017	18	0.0368	NEUTRAL	NA	3	"AGGF1,CRHBP,ZBED3"
TCGA.AA.A01C.01A	5	76348484	79095145	168	0.0975	NEUTRAL	NA	17	"AGGF1,AP3B1,ARSB,BHMT,BHMT2,CMYA5,DMGDH,HOMER1,JMY,LHFPL2,OTP,PAPD4,PDE8B,SCAMP1,TBCA,WDR41,ZBED3"
TCGA.CK.5914.01A	5	76355400	78407629	113	0.0366	NEUTRAL	NA	13	"AGGF1,AP3B1,ARSB,BHMT,BHMT2,DMGDH,LHFPL2,OTP,PDE8B,SCAMP1,TBCA,WDR41,ZBED3"
TCGA.AA.3967.01A	5	76506724	90678651	556	-0.3698	NEUTRAL	NA	49	"ACOT12,ADGRV1,ANKRD34B,AP3B1,ARRDC3,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CCNH,CETN3,CKMT2,CMYA5,COX7C,DHFR,DMGDH,EDIL3,FAM151B,HAPLN1,HOMER1,JMY,LHFPL2,LYSMD3,MBLAC2,MEF2C,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,POLR3G,RASA1,RASGRF2,RPS23,SCAMP1,SERINC5,SPZ1,SSBP2,TBCA,THBS4,TMEM161B,TMEM167A,VCAN,WDR41,XRCC4,ZCCHC9,ZFYVE16"
TCGA.AG.4009.01A	5	76607748	76754832	30	-0.0031	NEUTRAL	NA	2	"PDE8B,WDR41"
TCGA.AA.A00F.01A	5	76607748	77334848	45	-0.3697	NEUTRAL	NA	5	"AP3B1,OTP,PDE8B,TBCA,WDR41"
TCGA.AA.A00N.01A	5	76607748	78347080	99	0.3725	NEUTRAL	NA	9	"AP3B1,ARSB,DMGDH,LHFPL2,OTP,PDE8B,SCAMP1,TBCA,WDR41"
TCGA.AG.3909.01A	5	76607748	78347080	96	0.1926	NEUTRAL	NA	9	"AP3B1,ARSB,DMGDH,LHFPL2,OTP,PDE8B,SCAMP1,TBCA,WDR41"
TCGA.A6.3808.01A	5	76607748	82940160	374	-0.0976	NEUTRAL	NA	37	"ACOT12,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CKMT2,CMYA5,DHFR,DMGDH,FAM151B,HAPLN1,HOMER1,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,RASGRF2,RPS23,SCAMP1,SERINC5,SPZ1,SSBP2,TBCA,THBS4,TMEM167A,VCAN,WDR41,XRCC4,ZCCHC9,ZFYVE16"
TCGA.AA.A010.01A	5	76607748	90459560	554	0.0863	NEUTRAL	NA	48	"ACOT12,ADGRV1,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CCNH,CETN3,CKMT2,CMYA5,COX7C,DHFR,DMGDH,EDIL3,FAM151B,HAPLN1,HOMER1,JMY,LHFPL2,LYSMD3,MBLAC2,MEF2C,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,POLR3G,RASA1,RASGRF2,RPS23,SCAMP1,SERINC5,SPZ1,SSBP2,TBCA,THBS4,TMEM161B,TMEM167A,VCAN,WDR41,XRCC4,ZCCHC9,ZFYVE16"
TCGA.AG.A00C.01A	5	76607748	114598361	1181	-0.169	NEUTRAL	NA	105	Too-Many
TCGA.AG.A008.01A	5	76607748	180686963	4928	0.1106	NEUTRAL	NA	591	Too-Many
TCGA.AZ.4684.01A	5	76695997	82357617	339	-0.0076	NEUTRAL	NA	34	"ACOT12,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CKMT2,CMYA5,DHFR,DMGDH,FAM151B,HOMER1,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,RASGRF2,RPS23,SCAMP1,SERINC5,SPZ1,SSBP2,TBCA,THBS4,TMEM167A,WDR41,ZCCHC9,ZFYVE16"
TCGA.AZ.4614	5	76725581	79010682	651	-0.4938	NEUTRAL	NA	14	"AP3B1,ARSB,BHMT,BHMT2,CMYA5,DMGDH,HOMER1,JMY,LHFPL2,OTP,PAPD4,SCAMP1,TBCA,WDR41"
TCGA.AG.4009.01A	5	76758888	78347080	66	-0.2672	NEUTRAL	NA	8	"AP3B1,ARSB,DMGDH,LHFPL2,OTP,SCAMP1,TBCA,WDR41"
TCGA.AA.3982	5	76828219	76863327	12	-0.0643	NEUTRAL	NA	0	None
TCGA.AA.3982	5	76874093	77402556	183	0.0824	NEUTRAL	NA	3	"AP3B1,OTP,TBCA"
TCGA.AA.A00F.01A	5	77385169	77405994	3	0.1605	NEUTRAL	NA	1	AP3B1
TCGA.EI.7002	5	77402556	77794749	83	0.0426	NEUTRAL	NA	3	"AP3B1,LHFPL2,SCAMP1"
TCGA.AA.A00F.01A	5	77409577	90078892	340	-0.301	NEUTRAL	NA	44	"ACOT12,ADGRV1,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CCNH,CETN3,CKMT2,CMYA5,COX7C,DHFR,DMGDH,EDIL3,FAM151B,HAPLN1,HOMER1,JMY,LHFPL2,LYSMD3,MBLAC2,MEF2C,MSH3,MTRNR2L2,MTX3,PAPD4,POLR3G,RASA1,RASGRF2,RPS23,SCAMP1,SERINC5,SPZ1,SSBP2,THBS4,TMEM161B,TMEM167A,VCAN,XRCC4,ZCCHC9,ZFYVE16"
TCGA.AA.3982	5	77441298	77786763	71	-0.1721	NEUTRAL	NA	3	"AP3B1,LHFPL2,SCAMP1"
TCGA.AA.3982	5	77788871	80043403	666	0.1823	NEUTRAL	NA	19	"ANKRD34B,ARSB,BHMT,BHMT2,CMYA5,DHFR,DMGDH,FAM151B,HOMER1,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,PAPD4,SERINC5,SPZ1,THBS4,ZFYVE16"
TCGA.AG.3909.01A	5	78349960	78407629	11	-0.3892	NEUTRAL	NA	3	"BHMT,BHMT2,DMGDH"
TCGA.AA.A00D.01A	5	78373276	78586906	16	-0.0146	NEUTRAL	NA	3	"BHMT,BHMT2,JMY"
TCGA.AG.4009.01A	5	78384285	78964664	39	-0.1278	NEUTRAL	NA	5	"BHMT,BHMT2,HOMER1,JMY,PAPD4"
TCGA.A6.6653	5	78520730	87285199	2277	0.006	NEUTRAL	NA	30	"ACOT12,ANKRD34B,ATG10,ATP6AP1L,CCNH,CKMT2,CMYA5,COX7C,DHFR,EDIL3,FAM151B,HAPLN1,HOMER1,JMY,MSH3,MTRNR2L2,MTX3,PAPD4,RASA1,RASGRF2,RPS23,SERINC5,SPZ1,SSBP2,THBS4,TMEM167A,VCAN,XRCC4,ZCCHC9,ZFYVE16"
TCGA.AG.3909.01A	5	78532442	78752645	19	0.2924	NEUTRAL	NA	2	"HOMER1,JMY"
TCGA.CK.5914.01A	5	78532442	79024738	35	0.0759	NEUTRAL	NA	4	"CMYA5,HOMER1,JMY,PAPD4"
TCGA.AA.A00N.01A	5	78532442	79095145	50	0.372	NEUTRAL	NA	4	"CMYA5,HOMER1,JMY,PAPD4"
TCGA.AG.3906.01A	5	78532442	90459560	427	-0.0621	NEUTRAL	NA	37	"ACOT12,ADGRV1,ANKRD34B,ATG10,ATP6AP1L,CCNH,CETN3,CKMT2,CMYA5,COX7C,DHFR,EDIL3,FAM151B,HAPLN1,HOMER1,JMY,LYSMD3,MBLAC2,MEF2C,MSH3,MTRNR2L2,MTX3,PAPD4,POLR3G,RASA1,RASGRF2,RPS23,SERINC5,SPZ1,SSBP2,THBS4,TMEM161B,TMEM167A,VCAN,XRCC4,ZCCHC9,ZFYVE16"
TCGA.AA.A00D.01A	5	78610088	80667502	151	-0.3679	NEUTRAL	NA	18	"ACOT12,ANKRD34B,CKMT2,CMYA5,DHFR,FAM151B,HOMER1,JMY,MSH3,MTRNR2L2,MTX3,PAPD4,RASGRF2,SERINC5,SPZ1,THBS4,ZCCHC9,ZFYVE16"
TCGA.AG.3909.01A	5	78936623	78964664	7	0.1297	NEUTRAL	NA	1	PAPD4
TCGA.AG.4009.01A	5	79024738	79817805	75	-0.0148	NEUTRAL	NA	7	"CMYA5,FAM151B,MTX3,SERINC5,SPZ1,THBS4,ZFYVE16"
TCGA.CK.5914.01A	5	79084753	81573475	181	-0.2178	NEUTRAL	NA	18	"ACOT12,ANKRD34B,ATG10,CKMT2,CMYA5,DHFR,FAM151B,MSH3,MTRNR2L2,MTX3,RASGRF2,RPS23,SERINC5,SPZ1,SSBP2,THBS4,ZCCHC9,ZFYVE16"
TCGA.AG.A023.01A	5	79089221	139493997	2218	0.0156	NEUTRAL	NA	236	Too-Many
TCGA.AA.A01C.01A	5	79279460	79442990	30	-0.4782	NEUTRAL	NA	3	"MTX3,SERINC5,THBS4"
TCGA.AG.3909.01A	5	79351581	79378847	19	-0.3656	NEUTRAL	NA	1	THBS4
TCGA.AA.A00N.01A	5	79351581	79837462	55	0.0818	NEUTRAL	NA	5	"FAM151B,SERINC5,SPZ1,THBS4,ZFYVE16"
TCGA.AA.A02F.01A	5	79372626	80497122	89	0.0078	NEUTRAL	NA	10	"ANKRD34B,DHFR,FAM151B,MSH3,MTRNR2L2,RASGRF2,SERINC5,SPZ1,THBS4,ZFYVE16"
TCGA.AG.3909.01A	5	79441866	80667502	121	0.0459	NEUTRAL	NA	12	"ACOT12,ANKRD34B,CKMT2,DHFR,FAM151B,MSH3,MTRNR2L2,RASGRF2,SERINC5,SPZ1,ZCCHC9,ZFYVE16"
TCGA.AA.A01C.01A	5	79446641	96107277	531	0.0924	NEUTRAL	NA	50	"ACOT12,ADGRV1,ANKRD32,ANKRD34B,ARRDC3,ARSK,ATG10,ATP6AP1L,CAST,CCNH,CETN3,CKMT2,COX7C,DHFR,EDIL3,ELL2,ERAP1,FAM151B,FAM172A,FAM81B,GLRX,GPR150,HAPLN1,KIAA0825,LYSMD3,MBLAC2,MCTP1,MEF2C,MSH3,MTRNR2L2,NR2F1,PCSK1,POLR3G,POU5F2,RASA1,RASGRF2,RFESD,RHOBTB3,RPS23,SERINC5,SPATA9,SPZ1,SSBP2,TMEM161B,TMEM167A,TTC37,VCAN,XRCC4,ZCCHC9,ZFYVE16"
TCGA.AG.4009.01A	5	79837462	80109355	29	-0.4385	NEUTRAL	NA	5	"ANKRD34B,DHFR,FAM151B,MSH3,MTRNR2L2"
TCGA.AA.3930.01A	5	79945157	96098817	524	-0.1062	NEUTRAL	NA	45	"ACOT12,ADGRV1,ANKRD32,ARRDC3,ARSK,ATG10,ATP6AP1L,CAST,CCNH,CETN3,CKMT2,COX7C,DHFR,EDIL3,ELL2,ERAP1,FAM172A,FAM81B,GLRX,GPR150,HAPLN1,KIAA0825,LYSMD3,MBLAC2,MCTP1,MEF2C,MSH3,MTRNR2L2,NR2F1,PCSK1,POLR3G,POU5F2,RASA1,RASGRF2,RFESD,RHOBTB3,RPS23,SPATA9,SSBP2,TMEM161B,TMEM167A,TTC37,VCAN,XRCC4,ZCCHC9"
TCGA.CM.5864	5	80002349	180692832	31063	-0.1052	NEUTRAL	NA	567	Too-Many
TCGA.AA.A00N.01A	5	80021250	80667502	70	0.2734	NEUTRAL	NA	5	"ACOT12,CKMT2,MSH3,RASGRF2,ZCCHC9"
TCGA.AA.3982	5	80072601	80853707	255	0.1082	NEUTRAL	NA	6	"ACOT12,CKMT2,MSH3,RASGRF2,SSBP2,ZCCHC9"
TCGA.AG.4009.01A	5	80149937	80659557	57	0.0511	NEUTRAL	NA	5	"ACOT12,CKMT2,MSH3,RASGRF2,ZCCHC9"
TCGA.RU.A8FL	5	80496532	129460663	13939	-0.0105	NEUTRAL	NA	128	Too-Many
TCGA.AA.A02F.01A	5	80504149	96063182	418	0.093	NEUTRAL	NA	41	"ACOT12,ADGRV1,ANKRD32,ARRDC3,ARSK,ATG10,ATP6AP1L,CAST,CCNH,CETN3,CKMT2,COX7C,EDIL3,ELL2,FAM172A,FAM81B,GLRX,GPR150,HAPLN1,KIAA0825,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,PCSK1,POLR3G,POU5F2,RASA1,RASGRF2,RFESD,RHOBTB3,RPS23,SPATA9,SSBP2,TMEM161B,TMEM167A,TTC37,VCAN,XRCC4,ZCCHC9"
TCGA.AG.3611.01A	5	80552685	80641657	19	-0.0371	NEUTRAL	NA	3	"ACOT12,CKMT2,ZCCHC9"
TCGA.AG.3611.01A	5	80643551	109125131	557	-0.4366	NEUTRAL	NA	59	"ACOT12,ADGRV1,ANKRD32,ARRDC3,ARSK,ATG10,ATP6AP1L,C5orf30,CAST,CCNH,CETN3,CHD1,COX7C,EDIL3,EFNA5,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,HAPLN1,KIAA0825,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCTP1,MEF2C,NR2F1,NUDT12,PAM,PCSK1,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,RFESD,RGMB,RHOBTB3,RIOK2,RPS23,SLCO4C1,SLCO6A1,SPATA9,SSBP2,ST8SIA4,TMEM161B,TMEM167A,TTC37,VCAN,XRCC4"
TCGA.AA.A00D.01A	5	80681524	80756857	9	-0.0252	NEUTRAL	NA	2	"ACOT12,SSBP2"
TCGA.AA.A00N.01A	5	80744550	81601163	21	0.0455	NEUTRAL	NA	4	"ATG10,ATP6AP1L,RPS23,SSBP2"
TCGA.AA.3941	5	80755210	80853707	19	-0.1759	NEUTRAL	NA	1	SSBP2
TCGA.AA.3850	5	80755210	82440198	514	-0.12295	NEUTRAL	NA	6	"ATG10,ATP6AP1L,RPS23,SSBP2,TMEM167A,XRCC4"
TCGA.AG.3909.01A	5	80756857	87492046	100	0.2219	NEUTRAL	NA	13	"ATG10,ATP6AP1L,CCNH,COX7C,EDIL3,HAPLN1,RASA1,RPS23,SSBP2,TMEM161B,TMEM167A,VCAN,XRCC4"
TCGA.AG.4009.01A	5	80762742	86706989	96	-0.1278	NEUTRAL	NA	12	"ATG10,ATP6AP1L,CCNH,COX7C,EDIL3,HAPLN1,RASA1,RPS23,SSBP2,TMEM167A,VCAN,XRCC4"
TCGA.AA.3941	5	80904308	81868186	262	0.0312	NEUTRAL	NA	4	"ATG10,ATP6AP1L,RPS23,SSBP2"
TCGA.AA.3982	5	80908189	130300593	13953	-0.3188	NEUTRAL	NA	124	Too-Many
TCGA.AA.3556	5	81533734	97455699	3761	-0.0175	NEUTRAL	NA	41	"ADGRV1,ANKRD32,ARRDC3,ARSK,ATG10,ATP6AP1L,CAST,CCNH,CETN3,COX7C,EDIL3,ELL2,ERAP1,ERAP2,FAM172A,FAM81B,GLRX,GPR150,HAPLN1,KIAA0825,LIX1,LNPEP,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,PCSK1,POLR3G,POU5F2,RASA1,RFESD,RHOBTB3,RIOK2,RPS23,SPATA9,TMEM161B,TMEM167A,TTC37,VCAN,XRCC4"
TCGA.F5.6863	5	81546917	132081896	14207	0.0019	NEUTRAL	NA	142	Too-Many
TCGA.CK.5914.01A	5	81574054	86564238	50	0.1817	NEUTRAL	NA	9	"ATP6AP1L,COX7C,EDIL3,HAPLN1,RASA1,RPS23,TMEM167A,VCAN,XRCC4"
TCGA.AA.3844	5	81838108	89410112	1730	0.0244	NEUTRAL	NA	10	"CCNH,COX7C,EDIL3,HAPLN1,MEF2C,RASA1,TMEM161B,TMEM167A,VCAN,XRCC4"
TCGA.G4.6303	5	81882570	94120763	2677	-0.2884	NEUTRAL	NA	22	"ADGRV1,ANKRD32,ARRDC3,CCNH,CETN3,COX7C,EDIL3,FAM172A,HAPLN1,KIAA0825,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,POLR3G,POU5F2,RASA1,TMEM161B,TMEM167A,VCAN,XRCC4"
TCGA.AA.3941	5	81898167	82342110	178	-0.0903	NEUTRAL	NA	0	None
TCGA.D5.6535	5	82251129	136798440	15702	-0.3827	NEUTRAL	NA	182	Too-Many
TCGA.AA.3941	5	82364143	82440198	28	0.0064	NEUTRAL	NA	2	"TMEM167A,XRCC4"
TCGA.F5.6811.01A	5	82388593	110460629	722	0.3049	NEUTRAL	NA	57	"ADGRV1,ANKRD32,ARRDC3,ARSK,C5orf30,CAST,CCNH,CETN3,CHD1,COX7C,EDIL3,EFNA5,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,HAPLN1,KIAA0825,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCTP1,MEF2C,NR2F1,NUDT12,PAM,PCSK1,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,RFESD,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TMEM161B,TMEM232,TSLP,TTC37,VCAN,WDR36,XRCC4"
TCGA.CM.6677	5	82840632	86943277	930	-0.3113	NEUTRAL	NA	6	"CCNH,COX7C,EDIL3,HAPLN1,RASA1,VCAN"
TCGA.F4.6461	5	83639761	161305070	23304	0.0112	NEUTRAL	NA	421	Too-Many
TCGA.AA.3952	5	84170266	180692832	29914	0.0148	NEUTRAL	NA	553	Too-Many
TCGA.DY.A1DC	5	84216013	94195111	2022	0.0229	NEUTRAL	NA	17	"ADGRV1,ANKRD32,ARRDC3,CCNH,CETN3,COX7C,FAM172A,KIAA0825,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,POLR3G,POU5F2,RASA1,TMEM161B"
TCGA.F4.6460	5	84333372	117528780	9149	-0.3918	NEUTRAL	NA	79	"ADGRV1,ANKRD32,AP3S1,APC,ARL14EPL,ARRDC3,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CCNH,CDO1,CETN3,CHD1,COMMD10,COX7C,DCP2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,KCNN2,KIAA0825,LIX1,LNPEP,LVRN,LYSMD3,MAN2A1,MBLAC2,MCC,MCTP1,MEF2C,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM161B,TMEM232,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.AG.3742	5	84551711	113322032	7382	0.0136	NEUTRAL	NA	64	"ADGRV1,ANKRD32,APC,ARRDC3,ARSK,C5orf30,CAMK4,CAST,CCNH,CETN3,CHD1,COX7C,DCP2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCC,MCTP1,MEF2C,NR2F1,NREP,NUDT12,PAM,PCSK1,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TMEM161B,TMEM232,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.AA.3681	5	84596556	180692832	29824	0.3268	NEUTRAL	NA	553	Too-Many
TCGA.D5.5539	5	85700094	146767469	17543	-0.379	NEUTRAL	NA	316	Too-Many
TCGA.AZ.4684.01A	5	86669983	110432730	646	0.3747	NEUTRAL	NA	52	"ADGRV1,ANKRD32,ARRDC3,ARSK,C5orf30,CAST,CCNH,CETN3,CHD1,EFNA5,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCTP1,MEF2C,NR2F1,NUDT12,PAM,PCSK1,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,RFESD,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TMEM161B,TMEM232,TSLP,TTC37,WDR36"
TCGA.AG.3726	5	86670969	89734151	576	-0.0906	NEUTRAL	NA	5	"CCNH,CETN3,MEF2C,RASA1,TMEM161B"
TCGA.CM.6677	5	86943822	102946978	3709	-0.0242	NEUTRAL	NA	41	"ADGRV1,ANKRD32,ARRDC3,ARSK,C5orf30,CAST,CETN3,CHD1,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,NUDT12,PAM,PCSK1,POLR3G,POU5F2,PPIP5K2,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TMEM161B,TTC37"
TCGA.CL.5918	5	87125577	89410950	420	0.0322	NEUTRAL	NA	2	"MEF2C,TMEM161B"
TCGA.A6.6653	5	87322567	156472148	20794	0.0057	NEUTRAL	NA	387	Too-Many
TCGA.AG.4009.01A	5	88018400	89820850	25	-0.0519	NEUTRAL	NA	5	"CETN3,LYSMD3,MBLAC2,MEF2C,POLR3G"
TCGA.AA.3968	5	88858207	180692832	28958	-0.4439	NEUTRAL	NA	548	Too-Many
TCGA.AA.3844	5	89410950	90302116	253	0.3339	NEUTRAL	NA	5	"ADGRV1,CETN3,LYSMD3,MBLAC2,POLR3G"
TCGA.A6.3807	5	89663200	94071403	870	-0.1619	NEUTRAL	NA	12	"ADGRV1,ANKRD32,ARRDC3,CETN3,FAM172A,KIAA0825,LYSMD3,MBLAC2,MCTP1,NR2F1,POLR3G,POU5F2"
TCGA.CK.5914.01A	5	89689806	90103402	86	0.1055	NEUTRAL	NA	5	"ADGRV1,CETN3,LYSMD3,MBLAC2,POLR3G"
TCGA.AG.3909.01A	5	89781345	89914879	12	-0.2271	NEUTRAL	NA	3	"ADGRV1,LYSMD3,POLR3G"
TCGA.AA.A00K.01A	5	89802293	90368216	13	0.3742	NEUTRAL	NA	3	"ADGRV1,LYSMD3,POLR3G"
TCGA.AA.A00L.01A	5	89802293	90459560	19	0.0089	NEUTRAL	NA	3	"ADGRV1,LYSMD3,POLR3G"
TCGA.AA.A00D.01A	5	89802293	93076251	29	-0.1908	NEUTRAL	NA	7	"ADGRV1,ARRDC3,FAM172A,LYSMD3,NR2F1,POLR3G,POU5F2"
TCGA.AG.3909.01A	5	89918362	90124749	70	0.3581	NEUTRAL	NA	1	ADGRV1
TCGA.AG.4009.01A	5	89925020	90459560	79	-0.1204	NEUTRAL	NA	1	ADGRV1
TCGA.AA.A00F.01A	5	90086678	92920723	13	0.131	NEUTRAL	NA	3	"ADGRV1,ARRDC3,NR2F1"
TCGA.CK.5914.01A	5	90159524	90459560	8	0.2189	NEUTRAL	NA	1	ADGRV1
TCGA.AA.3977	5	90321287	98919156	2027	-0.0487	NEUTRAL	NA	26	"ADGRV1,ANKRD32,ARRDC3,ARSK,CAST,CHD1,ELL2,ERAP1,ERAP2,FAM172A,FAM81B,GLRX,GPR150,KIAA0825,LIX1,LNPEP,MCTP1,NR2F1,PCSK1,POU5F2,RFESD,RGMB,RHOBTB3,RIOK2,SPATA9,TTC37"
TCGA.EI.6508	5	90389449	127563562	11048	0.0284	NEUTRAL	NA	100	"ADGRV1,ALDH7A1,ANKRD32,AP3S1,APC,ARL14EPL,ARRDC3,ARSK,ATG12,C5orf30,C5orf63,CAMK4,CAST,CCDC112,CDO1,CEP120,CHD1,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,GRAMD3,HSD17B4,KCNN2,KIAA0825,LIX1,LMNB1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MARCH3,MCC,MCTP1,MEGF10,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PHAX,PJA2,POU5F2,PPIC,PPIP5K2,PRDM6,PRR16,PRRC1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC12A2,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.AG.3891.01A	5	90667169	92923638	10	0.3061	NEUTRAL	NA	2	"ARRDC3,NR2F1"
TCGA.AG.3726	5	90850614	94778939	785	-0.0923	NEUTRAL	NA	7	"ANKRD32,FAM172A,FAM81B,KIAA0825,MCTP1,NR2F1,POU5F2"
TCGA.AA.3844	5	90873883	91262136	87	-0.0058	NEUTRAL	NA	0	None
TCGA.EI.6514	5	91130069	180692832	28371	0.2354	NEUTRAL	NA	542	Too-Many
TCGA.AA.3844	5	91273509	92000164	121	-0.2782	NEUTRAL	NA	0	None
TCGA.AA.3844	5	92009826	94585920	516	0.0823	NEUTRAL	NA	6	"ANKRD32,FAM172A,KIAA0825,MCTP1,NR2F1,POU5F2"
TCGA.AH.6643	5	92576493	93143794	67	-0.4405	NEUTRAL	NA	3	"FAM172A,NR2F1,POU5F2"
TCGA.NH.A8F8	5	92757144	93052204	23	0.3508	NEUTRAL	NA	2	"FAM172A,NR2F1"
TCGA.AA.A00F.01A	5	92923638	102465282	325	-0.3558	NEUTRAL	NA	31	"ANKRD32,ARSK,CAST,CHD1,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,MCTP1,NR2F1,PAM,PCSK1,POU5F2,PPIP5K2,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TTC37"
TCGA.AG.3891.01A	5	92929251	108523082	409	-0.265	NEUTRAL	NA	36	"ANKRD32,ARSK,C5orf30,CAST,CHD1,EFNA5,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,MCTP1,NR2F1,NUDT12,PAM,PCSK1,POU5F2,PPIP5K2,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TTC37"
TCGA.AG.3909.01A	5	92956666	102444256	345	0.1871	NEUTRAL	NA	29	"ANKRD32,ARSK,CAST,CHD1,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,MCTP1,PAM,PCSK1,POU5F2,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TTC37"
TCGA.AA.A010.01A	5	92956666	108523082	446	0.071	NEUTRAL	NA	35	"ANKRD32,ARSK,C5orf30,CAST,CHD1,EFNA5,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,MCTP1,NUDT12,PAM,PCSK1,POU5F2,PPIP5K2,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TTC37"
TCGA.AG.3906.01A	5	92956666	118440818	708	-0.0892	NEUTRAL	NA	69	"ANKRD32,AP3S1,APC,ARL14EPL,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CHD1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,KCNN2,KIAA0825,LIX1,LNPEP,LVRN,MAN2A1,MCC,MCTP1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POU5F2,PPIP5K2,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.CK.5914.01A	5	93076251	93800524	21	0.2107	NEUTRAL	NA	3	"FAM172A,KIAA0825,POU5F2"
TCGA.AG.4009.01A	5	93076251	95018185	101	-0.1127	NEUTRAL	NA	11	"ANKRD32,ARSK,FAM172A,FAM81B,GPR150,KIAA0825,MCTP1,POU5F2,RFESD,SPATA9,TTC37"
TCGA.AF.3914.01A	5	93076251	140044448	1980	-0.1525	NEUTRAL	NA	216	Too-Many
TCGA.NH.A8F8	5	93121720	93326361	30	0.3401	NEUTRAL	NA	1	FAM172A
TCGA.AH.6643	5	93157265	180692832	28003	0.1036	NEUTRAL	NA	540	Too-Many
TCGA.A6.4105	5	93222033	180692832	28044	-0.3051	NEUTRAL	NA	540	Too-Many
TCGA.DM.A1HA	5	93326361	135982715	12919	0.0396	NEUTRAL	NA	163	Too-Many
TCGA.NH.A8F8	5	93347690	180692832	28029	0	NEUTRAL	NA	540	Too-Many
TCGA.AA.3967.01A	5	93386385	137206361	1574	-0.2998	NEUTRAL	NA	167	Too-Many
TCGA.DM.A0XD	5	93533657	145124400	15378	0.0122	NEUTRAL	NA	291	Too-Many
TCGA.DM.A1HB	5	93713545	115063677	6102	-0.0347	NEUTRAL	NA	58	"ANKRD32,APC,ARSK,C5orf30,CAMK4,CAST,CCDC112,CHD1,DCP2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,KCNN2,KIAA0825,LIX1,LNPEP,MAN2A1,MCC,MCTP1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,PPIP5K2,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.CK.5914.01A	5	93805619	93988940	16	-0.3948	NEUTRAL	NA	2	"ANKRD32,KIAA0825"
TCGA.AA.A01F.01A	5	93859597	127654534	922	0.0921	NEUTRAL	NA	96	"ALDH7A1,ANKRD32,AP3S1,APC,ARL14EPL,ARSK,ATG12,C5orf30,C5orf63,CAMK4,CAST,CCDC112,CDO1,CEP120,CHD1,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM174A,FAM81B,FBN2,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,GRAMD3,HSD17B4,KCNN2,KIAA0825,LIX1,LMNB1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MARCH3,MCC,MCTP1,MEGF10,NREP,NUDT12,PAM,PCSK1,PGGT1B,PHAX,PJA2,PPIC,PPIP5K2,PRDM6,PRR16,PRRC1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC12A2,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.DC.6682	5	93907888	180692832	27905	-0.1474	NEUTRAL	NA	539	Too-Many
TCGA.CK.5914.01A	5	93990283	94030485	13	0.0754	NEUTRAL	NA	1	ANKRD32
TCGA.A6.3807	5	94074108	103765877	2523	0.1604	NEUTRAL	NA	28	"ARSK,C5orf30,CAST,CHD1,ELL2,ERAP1,ERAP2,FAM174A,FAM81B,GIN1,GLRX,GPR150,LIX1,LNPEP,MCTP1,NUDT12,PAM,PCSK1,PPIP5K2,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TTC37"
TCGA.G4.6303	5	94132162	180692832	27914	0.0505	NEUTRAL	NA	537	Too-Many
TCGA.DY.A1DC	5	94217328	98500664	1211	0.0476	NEUTRAL	NA	19	"ARSK,CAST,CHD1,ELL2,ERAP1,ERAP2,FAM81B,GLRX,GPR150,LIX1,LNPEP,MCTP1,PCSK1,RFESD,RGMB,RHOBTB3,RIOK2,SPATA9,TTC37"
TCGA.CK.5914.01A	5	94244917	94863700	46	0.0553	NEUTRAL	NA	3	"FAM81B,MCTP1,TTC37"
TCGA.AA.3850	5	94321177	95795558	391	-0.16365	NEUTRAL	NA	11	"ARSK,ELL2,FAM81B,GLRX,GPR150,MCTP1,PCSK1,RFESD,RHOBTB3,SPATA9,TTC37"
TCGA.AA.3971	5	94363836	176248035	26711	-0.0154	NEUTRAL	NA	468	Too-Many
TCGA.AA.3941	5	94394560	96522674	652	-0.0761	NEUTRAL	NA	17	"ARSK,CAST,ELL2,ERAP1,ERAP2,FAM81B,GLRX,GPR150,LIX1,LNPEP,MCTP1,PCSK1,RFESD,RHOBTB3,RIOK2,SPATA9,TTC37"
TCGA.DM.A280	5	94405026	108951189	3817	-0.3615	NEUTRAL	NA	32	"ARSK,C5orf30,CAST,CHD1,EFNA5,ELL2,ERAP1,ERAP2,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,LIX1,LNPEP,MCTP1,NUDT12,PAM,PCSK1,PJA2,PPIP5K2,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TTC37"
TCGA.AG.3731	5	94668414	95310984	191	0.2045	NEUTRAL	NA	9	"ARSK,ELL2,FAM81B,GLRX,GPR150,RFESD,RHOBTB3,SPATA9,TTC37"
TCGA.A6.2675	5	94726160	143130522	14419	-0.0043	NEUTRAL	NA	285	Too-Many
TCGA.AA.3844	5	94749722	94802818	24	0.0988	NEUTRAL	NA	2	"FAM81B,TTC37"
TCGA.AG.3890	5	94787131	100718991	1531	-0.3347	NEUTRAL	NA	19	"ARSK,CAST,CHD1,ELL2,ERAP1,ERAP2,FAM174A,GLRX,GPR150,LIX1,LNPEP,PCSK1,RFESD,RGMB,RHOBTB3,RIOK2,SPATA9,ST8SIA4,TTC37"
TCGA.G4.6298	5	94802388	180692832	27676	-0.0281	NEUTRAL	NA	535	Too-Many
TCGA.AA.A00N.01A	5	94856383	94955928	24	0.0322	NEUTRAL	NA	2	"ARSK,TTC37"
TCGA.CK.5914.01A	5	94864658	95087904	29	-0.4773	NEUTRAL	NA	6	"ARSK,GPR150,RFESD,RHOBTB3,SPATA9,TTC37"
TCGA.AA.A02K.01A	5	94903578	121411060	747	0.0593	NEUTRAL	NA	69	"AP3S1,APC,ARL14EPL,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CHD1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM174A,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,HSD17B4,KCNN2,LIX1,LNPEP,LOX,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,PPIP5K2,PRR16,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AG.4009.01A	5	95087904	108523082	300	-0.1571	NEUTRAL	NA	24	"C5orf30,CAST,CHD1,EFNA5,ELL2,ERAP1,ERAP2,FAM174A,FBXL17,FER,GIN1,GLRX,LIX1,LNPEP,NUDT12,PAM,PCSK1,PPIP5K2,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.CK.5914.01A	5	95091117	110096857	360	0.1366	NEUTRAL	NA	28	"C5orf30,CAST,CHD1,EFNA5,ELL2,ERAP1,ERAP2,FAM174A,FBXL17,FER,GIN1,GLRX,LIX1,LNPEP,MAN2A1,NUDT12,PAM,PCSK1,PJA2,PPIP5K2,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,ST8SIA4,TMEM232"
TCGA.CL.5918	5	95196027	110829077	4160	0.0133	NEUTRAL	NA	29	"C5orf30,CAMK4,CAST,CHD1,EFNA5,ELL2,ERAP1,ERAP2,FAM174A,FBXL17,FER,GIN1,LIX1,LNPEP,MAN2A1,NUDT12,PAM,PCSK1,PJA2,PPIP5K2,RGMB,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,ST8SIA4,TMEM232,TSLP,WDR36"
TCGA.AA.3844	5	95240864	112878339	4947	0.1314	NEUTRAL	NA	39	"APC,C5orf30,CAMK4,CAST,CHD1,DCP2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM174A,FBXL17,FER,GIN1,LIX1,LNPEP,MAN2A1,MCC,NREP,NUDT12,PAM,PCSK1,PJA2,PPIP5K2,REEP5,RGMB,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SRP19,ST8SIA4,STARD4,TMEM232,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AG.3731	5	95311170	95531157	38	-0.0741	NEUTRAL	NA	0	None
TCGA.AG.3731	5	95531219	96490261	335	0.2256	NEUTRAL	NA	6	"CAST,ERAP1,ERAP2,LIX1,LNPEP,PCSK1"
TCGA.AA.3850	5	95808482	95872243	35	-0.31405	NEUTRAL	NA	0	None
TCGA.AA.3850	5	95881484	96684048	270	0.00115	NEUTRAL	NA	6	"CAST,ERAP1,ERAP2,LIX1,LNPEP,RIOK2"
TCGA.AA.A02F.01A	5	96071879	150418611	2578	0.1342	NEUTRAL	NA	335	Too-Many
TCGA.AA.A017.01A	5	96075685	96239082	50	0.3057	NEUTRAL	NA	3	"CAST,ERAP1,ERAP2"
TCGA.AA.3930.01A	5	96100875	96244618	37	0.2782	NEUTRAL	NA	3	"CAST,ERAP1,ERAP2"
TCGA.AA.A01C.01A	5	96215352	110434369	264	-0.1204	NEUTRAL	NA	24	"C5orf30,CHD1,EFNA5,ERAP2,FAM174A,FBXL17,FER,GIN1,LIX1,LNPEP,MAN2A1,NUDT12,PAM,PJA2,PPIP5K2,RGMB,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,ST8SIA4,TMEM232,TSLP,WDR36"
TCGA.AA.3930.01A	5	96245246	140085169	1903	0.0092	NEUTRAL	NA	203	Too-Many
TCGA.AA.A017.01A	5	96349305	96443034	11	0.073	NEUTRAL	NA	2	"LIX1,LNPEP"
TCGA.AG.3731	5	96496012	180692832	27160	-0.1287	NEUTRAL	NA	521	Too-Many
TCGA.AG.3726	5	96557632	106347550	2283	-0.0552	NEUTRAL	NA	11	"C5orf30,CHD1,FAM174A,GIN1,NUDT12,PAM,PPIP5K2,RGMB,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.AA.3680	5	96656965	99011986	564	-0.0038	NEUTRAL	NA	2	"CHD1,RGMB"
TCGA.AA.3684	5	97088565	141748678	13246	0.1334	NEUTRAL	NA	266	Too-Many
TCGA.AA.3494	5	97116590	105061352	1936	0.0259	NEUTRAL	NA	11	"C5orf30,CHD1,FAM174A,GIN1,NUDT12,PAM,PPIP5K2,RGMB,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.CM.6161	5	97116590	180692832	26960	0.2909	NEUTRAL	NA	520	Too-Many
TCGA.DY.A1H8	5	97116590	180692832	26991	-0.0216	NEUTRAL	NA	520	Too-Many
TCGA.EI.6509	5	97116686	180692832	27012	-0.0198	NEUTRAL	NA	520	Too-Many
TCGA.DC.6683	5	97940868	180692832	26747	0.0866	NEUTRAL	NA	520	Too-Many
TCGA.AA.A017.01A	5	98106276	98192064	4	-0.3075	NEUTRAL	NA	2	"CHD1,RGMB"
TCGA.AA.A017.01A	5	98193872	98217630	15	0.2843	NEUTRAL	NA	1	CHD1
TCGA.AA.A017.01A	5	98218775	98228201	5	-0.0394	NEUTRAL	NA	1	CHD1
TCGA.AA.A017.01A	5	98231933	114462228	336	0.2261	NEUTRAL	NA	32	"APC,C5orf30,CAMK4,CHD1,DCP2,EFNA5,EPB41L4A,FAM174A,FBXL17,FER,GIN1,KCNN2,MAN2A1,MCC,NREP,NUDT12,PAM,PJA2,PPIP5K2,REEP5,SLC25A46,SLCO4C1,SLCO6A1,SRP19,ST8SIA4,STARD4,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.DY.A1DC	5	98574952	99446755	217	0.0701	NEUTRAL	NA	0	None
TCGA.AA.3977	5	98929718	180692832	26500	0	NEUTRAL	NA	518	Too-Many
TCGA.CA.6715	5	99536419	119526785	6238	-0.0348	NEUTRAL	NA	49	"AP3S1,APC,ARL14EPL,ATG12,C5orf30,CAMK4,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FAM174A,FBXL17,FEM1C,FER,GIN1,HSD17B4,KCNN2,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIP5K2,REEP5,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.DY.A1DC	5	99541965	100249341	164	-0.005	NEUTRAL	NA	2	"FAM174A,ST8SIA4"
TCGA.CA.6719	5	100243504	100265702	8	0.1162	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	100265702	100633213	65	-0.0552	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	100635982	100718991	24	-0.0636	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	100766803	110668699	2657	0.0215	NEUTRAL	NA	17	"C5orf30,CAMK4,EFNA5,FBXL17,FER,GIN1,MAN2A1,NUDT12,PAM,PJA2,PPIP5K2,SLC25A46,SLCO4C1,SLCO6A1,TMEM232,TSLP,WDR36"
TCGA.CA.6716	5	100907854	112377616	3262	-0.3043	NEUTRAL	NA	25	"APC,C5orf30,CAMK4,DCP2,EFNA5,EPB41L4A,FBXL17,FER,GIN1,MAN2A1,MCC,NREP,NUDT12,PAM,PJA2,PPIP5K2,REEP5,SLC25A46,SLCO4C1,SLCO6A1,SRP19,STARD4,TMEM232,TSLP,WDR36"
TCGA.CM.6675	5	100907854	180692832	26014	0.0014	NEUTRAL	NA	516	Too-Many
TCGA.AA.3518	5	100944420	180692832	26048	0.0068	NEUTRAL	NA	516	Too-Many
TCGA.AA.3695	5	101261799	120656986	6220	-0.4292	NEUTRAL	NA	48	"AP3S1,APC,ARL14EPL,ATG12,C5orf30,CAMK4,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FBXL17,FEM1C,FER,GIN1,HSD17B4,KCNN2,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIP5K2,PRR16,REEP5,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.3712	5	101310579	112730215	3349	-0.3715	NEUTRAL	NA	25	"APC,C5orf30,CAMK4,DCP2,EFNA5,EPB41L4A,FBXL17,FER,GIN1,MAN2A1,MCC,NREP,NUDT12,PAM,PJA2,PPIP5K2,REEP5,SLC25A46,SLCO4C1,SLCO6A1,SRP19,STARD4,TMEM232,TSLP,WDR36"
TCGA.AG.3890	5	101394873	133034194	9817	-0.3485	NEUTRAL	NA	108	Too-Many
TCGA.AA.3860	5	101891173	102863758	213	-0.326	NEUTRAL	NA	4	"C5orf30,GIN1,PAM,PPIP5K2"
TCGA.AA.A00F.01A	5	102469107	102493845	12	-0.0266	NEUTRAL	NA	1	PPIP5K2
TCGA.AG.3909.01A	5	102489504	102494801	5	-0.3949	NEUTRAL	NA	1	PPIP5K2
TCGA.AA.A00F.01A	5	102494801	102530584	12	-0.4627	NEUTRAL	NA	1	PPIP5K2
TCGA.AG.3909.01A	5	102502831	114598361	272	0.1055	NEUTRAL	NA	26	"APC,C5orf30,CAMK4,DCP2,EFNA5,EPB41L4A,FBXL17,FER,KCNN2,MAN2A1,MCC,NREP,NUDT12,PGGT1B,PJA2,PPIP5K2,REEP5,SLC25A46,SRP19,STARD4,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.A00F.01A	5	102537211	102895734	8	-0.1428	NEUTRAL	NA	3	"C5orf30,NUDT12,PPIP5K2"
TCGA.AA.A00N.01A	5	102537211	102895734	12	-0.1942	NEUTRAL	NA	3	"C5orf30,NUDT12,PPIP5K2"
TCGA.AA.3860	5	102867036	103550171	186	0.0507	NEUTRAL	NA	1	NUDT12
TCGA.CM.6677	5	102950520	107731009	1311	-0.2847	NEUTRAL	NA	2	"EFNA5,FBXL17"
TCGA.F5.6464	5	103060390	140743660	11476	-0.2003	NEUTRAL	NA	227	Too-Many
TCGA.AA.3556	5	103119104	130813275	8745	-0.0031	NEUTRAL	NA	75	"ADAMTS19,ALDH7A1,AP3S1,APC,ARL14EPL,ATG12,C5orf63,CAMK4,CCDC112,CDC42SE2,CDO1,CEP120,CHSY3,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FBN2,FBXL17,FEM1C,FER,FTMT,GRAMD3,HINT1,HSD17B4,ISOC1,KCNN2,KIAA1024L,LMNB1,LOC100505841,LOX,LVRN,LYRM7,MAN2A1,MARCH3,MCC,MEGF10,NREP,PGGT1B,PHAX,PJA2,PPIC,PRDM6,PRR16,PRRC1,RAPGEF6,REEP5,SEMA6A,SLC12A2,SLC25A46,SLC27A6,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.CA.5254	5	103296776	103849452	129	-0.4145	NEUTRAL	NA	0	None
TCGA.AA.3860	5	103551791	104478206	251	-0.3706	NEUTRAL	NA	0	None
TCGA.A6.3807	5	103766153	106565080	590	-0.1716	NEUTRAL	NA	0	None
TCGA.CA.5254	5	103878651	144484260	12564	0.0059	NEUTRAL	NA	261	Too-Many
TCGA.AA.3860	5	104483420	106255757	317	-0.0442	NEUTRAL	NA	0	None
TCGA.F4.6808	5	104615826	105298114	128	0.0387	NEUTRAL	NA	0	None
TCGA.DM.A1D6	5	104646390	180692832	25132	-0.039	NEUTRAL	NA	509	Too-Many
TCGA.AD.6964	5	104715302	133439875	9206	-0.4448	NEUTRAL	NA	103	Too-Many
TCGA.AA.3494	5	105061502	150090780	14296	-0.4581	NEUTRAL	NA	313	Too-Many
TCGA.EI.6885	5	105569828	180692832	24937	-0.0274	NEUTRAL	NA	509	Too-Many
TCGA.D5.6530	5	106034796	180692832	24925	0	NEUTRAL	NA	509	Too-Many
TCGA.AA.3860	5	106256407	107424991	516	-0.3959	NEUTRAL	NA	2	"EFNA5,FBXL17"
TCGA.A6.3807	5	106567905	108048834	620	0.1831	NEUTRAL	NA	2	"EFNA5,FBXL17"
TCGA.G5.6235	5	106655511	180692832	24754	-0.008	NEUTRAL	NA	509	Too-Many
TCGA.AA.3850	5	106678009	110437493	1188	-0.34685	NEUTRAL	NA	9	"EFNA5,FBXL17,FER,MAN2A1,PJA2,SLC25A46,TMEM232,TSLP,WDR36"
TCGA.AA.3941	5	106678009	113944967	2577	-0.3144	NEUTRAL	NA	21	"APC,CAMK4,DCP2,EFNA5,EPB41L4A,FBXL17,FER,KCNN2,MAN2A1,MCC,NREP,PJA2,REEP5,SLC25A46,SRP19,STARD4,TMEM232,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.A00F.01A	5	106716907	108523082	30	-0.4946	NEUTRAL	NA	3	"EFNA5,FBXL17,FER"
TCGA.AA.3994	5	106813414	109725233	965	0.085	NEUTRAL	NA	5	"EFNA5,FBXL17,FER,MAN2A1,PJA2"
TCGA.AM.5820	5	106965368	129209597	7529	-0.0074	NEUTRAL	NA	70	"ADAMTS19,ALDH7A1,AP3S1,APC,ARL14EPL,ATG12,C5orf63,CAMK4,CCDC112,CDO1,CEP120,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FBN2,FBXL17,FEM1C,FER,FTMT,GRAMD3,HSD17B4,ISOC1,KCNN2,KIAA1024L,LMNB1,LOC100505841,LOX,LVRN,MAN2A1,MARCH3,MCC,MEGF10,NREP,PGGT1B,PHAX,PJA2,PPIC,PRDM6,PRR16,PRRC1,REEP5,SEMA6A,SLC12A2,SLC25A46,SLC27A6,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.AA.3680	5	107065897	180692832	24557	-0.0006	NEUTRAL	NA	508	Too-Many
TCGA.AA.3860	5	107426899	110165994	726	0.0236	NEUTRAL	NA	6	"FBXL17,FER,MAN2A1,PJA2,SLC25A46,TMEM232"
TCGA.CM.6677	5	107733614	111586220	1143	-0.0292	NEUTRAL	NA	11	"CAMK4,EPB41L4A,FER,MAN2A1,NREP,PJA2,SLC25A46,STARD4,TMEM232,TSLP,WDR36"
TCGA.A6.3807	5	108051978	110837446	773	-0.187	NEUTRAL	NA	9	"CAMK4,FER,MAN2A1,PJA2,SLC25A46,STARD4,TMEM232,TSLP,WDR36"
TCGA.CM.5341	5	108351959	160525192	17178	0.0235	NEUTRAL	NA	371	Too-Many
TCGA.AA.A00F.01A	5	108672892	108691569	4	0.1598	NEUTRAL	NA	1	PJA2
TCGA.AG.3891.01A	5	108672892	108691569	4	0.2832	NEUTRAL	NA	1	PJA2
TCGA.AG.4009.01A	5	108691569	109125131	19	-0.2885	NEUTRAL	NA	2	"MAN2A1,PJA2"
TCGA.AA.A00F.01A	5	108698494	109152927	19	-0.3828	NEUTRAL	NA	2	"MAN2A1,PJA2"
TCGA.AG.3891.01A	5	108698494	112102847	107	-0.2848	NEUTRAL	NA	11	"APC,CAMK4,EPB41L4A,MAN2A1,NREP,PJA2,SLC25A46,STARD4,TMEM232,TSLP,WDR36"
TCGA.AA.A00N.01A	5	108698494	114598361	233	0.3289	NEUTRAL	NA	20	"APC,CAMK4,DCP2,EPB41L4A,KCNN2,MAN2A1,MCC,NREP,PGGT1B,PJA2,REEP5,SLC25A46,SRP19,STARD4,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.A010.01A	5	108698494	118437614	316	0.1147	NEUTRAL	NA	34	"AP3S1,APC,ARL14EPL,ATG12,CAMK4,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,EPB41L4A,FEM1C,KCNN2,LVRN,MAN2A1,MCC,NREP,PGGT1B,PJA2,REEP5,SEMA6A,SLC25A46,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.DM.A280	5	108964906	114466144	1964	-0.3533	NEUTRAL	NA	18	"APC,CAMK4,DCP2,EPB41L4A,KCNN2,MAN2A1,MCC,NREP,REEP5,SLC25A46,SRP19,STARD4,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.DM.A288	5	109053334	110190400	297	-0.5141	NEUTRAL	NA	3	"MAN2A1,SLC25A46,TMEM232"
TCGA.AA.A00F.01A	5	109155349	110083817	14	-0.0232	NEUTRAL	NA	3	"MAN2A1,SLC25A46,TMEM232"
TCGA.AD.6901	5	109384130	180692832	23715	-0.2685	NEUTRAL	NA	504	Too-Many
TCGA.AA.3973	5	109965951	180692832	23653	0	NEUTRAL	NA	504	Too-Many
TCGA.AG.3726	5	110021178	180692832	23656	-0.0161	NEUTRAL	NA	504	Too-Many
TCGA.AG.4009.01A	5	110077668	114859963	198	-0.1266	NEUTRAL	NA	19	"APC,CAMK4,CCDC112,DCP2,EPB41L4A,FEM1C,KCNN2,MCC,NREP,PGGT1B,REEP5,SLC25A46,SRP19,STARD4,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AG.3611.01A	5	110077668	118969604	295	-0.3966	NEUTRAL	NA	34	"AP3S1,APC,ARL14EPL,ATG12,CAMK4,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,EPB41L4A,FAM170A,FEM1C,HSD17B4,KCNN2,LVRN,MCC,NREP,PGGT1B,REEP5,SEMA6A,SLC25A46,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.A00F.01A	5	110091093	114462228	140	-0.3933	NEUTRAL	NA	16	"APC,CAMK4,DCP2,EPB41L4A,KCNN2,MCC,NREP,REEP5,SLC25A46,SRP19,STARD4,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.3713	5	110152138	114373299	1616	-0.4576	NEUTRAL	NA	14	"APC,CAMK4,DCP2,EPB41L4A,KCNN2,MCC,NREP,REEP5,SRP19,STARD4,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.3860	5	110168517	111910077	651	-0.4006	NEUTRAL	NA	6	"CAMK4,EPB41L4A,NREP,STARD4,TSLP,WDR36"
TCGA.DM.A288	5	110192121	180692832	23550	0.0069	NEUTRAL	NA	502	Too-Many
TCGA.CK.4948.01B	5	110407137	110411597	5	-0.3827	NEUTRAL	NA	1	TSLP
TCGA.CK.4948.01B	5	110427955	145483705	2005	-0.0233	NEUTRAL	NA	257	Too-Many
TCGA.AA.3850	5	110454955	110523292	34	-0.19685	NEUTRAL	NA	1	WDR36
TCGA.AA.A01C.01A	5	110456167	110808950	14	0.0602	NEUTRAL	NA	2	"CAMK4,WDR36"
TCGA.AZ.4684.01A	5	110459506	122949998	404	0.2309	NEUTRAL	NA	45	"AP3S1,APC,ARL14EPL,ATG12,CAMK4,CCDC112,CDO1,CEP120,COMMD10,CSNK1G3,DCP2,DMXL1,DTWD2,EPB41L4A,FAM170A,FEM1C,FTMT,HSD17B4,KCNN2,LOC100505841,LOX,LVRN,MCC,NREP,PGGT1B,PPIC,PRDM6,PRR16,REEP5,SEMA6A,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TNFAIP8,TRIM36,TSSK1B,WDR36,YTHDC2,ZNF474"
TCGA.F5.6811.01A	5	110473765	140552263	1722	0.2757	NEUTRAL	NA	201	Too-Many
TCGA.EI.7002	5	110485573	180692832	23470	0.317	NEUTRAL	NA	500	Too-Many
TCGA.AA.3850	5	110527308	110666403	38	-0.36075	NEUTRAL	NA	1	CAMK4
TCGA.AA.3850	5	110684486	110688245	3	-0.11455	NEUTRAL	NA	1	CAMK4
TCGA.AA.3509.01A	5	110712509	112849542	98	0.0423	NEUTRAL	NA	11	"APC,CAMK4,DCP2,EPB41L4A,MCC,NREP,REEP5,SRP19,STARD4,TSSK1B,YTHDC2"
TCGA.AA.3850	5	110732880	110771055	11	0.25915	NEUTRAL	NA	1	CAMK4
TCGA.AA.3850	5	110777539	110884997	33	0.17625	NEUTRAL	NA	2	"CAMK4,STARD4"
TCGA.CK.5914.01A	5	110835557	111506579	15	-0.5024	NEUTRAL	NA	3	"EPB41L4A,NREP,STARD4"
TCGA.A6.3807	5	110839902	170620246	20070	0.1269	NEUTRAL	NA	386	Too-Many
TCGA.AA.3850	5	110917170	111480362	204	-0.39175	NEUTRAL	NA	1	NREP
TCGA.AA.3850	5	111480533	113053461	643	0.01155	NEUTRAL	NA	8	"APC,DCP2,EPB41L4A,MCC,REEP5,SRP19,TSSK1B,YTHDC2"
TCGA.AA.A01C.01A	5	111504380	126790197	447	-0.2339	NEUTRAL	NA	50	"ALDH7A1,AP3S1,APC,ARL14EPL,ATG12,C5orf63,CCDC112,CDO1,CEP120,COMMD10,CSNK1G3,DCP2,DMXL1,DTWD2,EPB41L4A,FAM170A,FEM1C,FTMT,GRAMD3,HSD17B4,KCNN2,LMNB1,LOC100505841,LOX,LVRN,MARCH3,MCC,MEGF10,PGGT1B,PHAX,PPIC,PRDM6,PRR16,REEP5,SEMA6A,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,TEX43,TICAM2,TMED7,TMED7-TICAM2,TNFAIP8,TRIM36,TSSK1B,YTHDC2,ZNF474,ZNF608"
TCGA.CK.5914.01A	5	111519673	113831543	110	0.1014	NEUTRAL	NA	9	"APC,DCP2,EPB41L4A,KCNN2,MCC,REEP5,SRP19,TSSK1B,YTHDC2"
TCGA.CM.6677	5	111586428	162023082	16541	-0.2726	NEUTRAL	NA	365	Too-Many
TCGA.AA.3860	5	111910426	118431041	2517	0.0127	NEUTRAL	NA	24	"AP3S1,APC,ARL14EPL,ATG12,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,FEM1C,KCNN2,LVRN,MCC,PGGT1B,REEP5,SEMA6A,SRP19,TICAM2,TMED7,TMED7-TICAM2,TRIM36,TSSK1B,YTHDC2"
TCGA.AG.3891.01A	5	112111314	112362990	34	-0.0024	NEUTRAL	NA	5	"APC,DCP2,MCC,REEP5,SRP19"
TCGA.AG.4008	5	112140021	180692832	22754	-0.2676	NEUTRAL	NA	496	Too-Many
TCGA.AG.A01L.01A	5	112256810	127512769	429	0.1357	NEUTRAL	NA	50	"ALDH7A1,AP3S1,ARL14EPL,ATG12,C5orf63,CCDC112,CDO1,CEP120,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,FAM170A,FEM1C,FTMT,GRAMD3,HSD17B4,KCNN2,LMNB1,LOC100505841,LOX,LVRN,MARCH3,MCC,MEGF10,PGGT1B,PHAX,PPIC,PRDM6,PRR16,PRRC1,REEP5,SEMA6A,SLC12A2,SNCAIP,SNX2,SNX24,SRFBP1,TEX43,TICAM2,TMED7,TMED7-TICAM2,TNFAIP8,TRIM36,TSSK1B,YTHDC2,ZNF474,ZNF608"
TCGA.F5.6864	5	112347827	180692832	22793	-0.0063	NEUTRAL	NA	493	Too-Many
TCGA.AG.3891.01A	5	112364594	118280223	153	-0.2698	NEUTRAL	NA	19	"AP3S1,ARL14EPL,ATG12,CCDC112,CDO1,COMMD10,DTWD2,FEM1C,KCNN2,LVRN,MCC,PGGT1B,SEMA6A,TICAM2,TMED7,TMED7-TICAM2,TRIM36,TSSK1B,YTHDC2"
TCGA.AA.3848	5	112373717	180692832	22839	-0.1226	NEUTRAL	NA	492	Too-Many
TCGA.CA.6716	5	112379658	180692832	22786	0.0194	NEUTRAL	NA	492	Too-Many
TCGA.5M.AATA	5	112676023	180692832	22642	-0.1915	NEUTRAL	NA	492	Too-Many
TCGA.AF.2687	5	112715373	180692832	22591	-0.3797	NEUTRAL	NA	492	Too-Many
TCGA.AA.3712	5	112732470	180692832	22632	-0.0083	NEUTRAL	NA	492	Too-Many
TCGA.EI.6507	5	112786115	180692832	22610	0	NEUTRAL	NA	491	Too-Many
TCGA.AA.3844	5	112932317	113897880	411	0.191	NEUTRAL	NA	1	KCNN2
TCGA.AA.3530	5	113204535	180692832	22422	0.0142	NEUTRAL	NA	489	Too-Many
TCGA.AG.3742	5	113336967	179615477	21968	0	NEUTRAL	NA	472	Too-Many
TCGA.AZ.6606	5	113336967	180692832	22329	0.3442	NEUTRAL	NA	489	Too-Many
TCGA.AG.3612	5	113755796	180692832	22113	-0.0495	NEUTRAL	NA	489	Too-Many
TCGA.AA.3844	5	113897907	114110197	95	-0.2235	NEUTRAL	NA	0	None
TCGA.AA.3941	5	113972738	115422933	514	-0.2054	NEUTRAL	NA	13	"AP3S1,ARL14EPL,ATG12,CCDC112,CDO1,COMMD10,FEM1C,LVRN,PGGT1B,TICAM2,TMED7,TMED7-TICAM2,TRIM36"
TCGA.AA.3850	5	113984241	115578809	571	-0.22355	NEUTRAL	NA	13	"AP3S1,ARL14EPL,ATG12,CCDC112,CDO1,COMMD10,FEM1C,LVRN,PGGT1B,TICAM2,TMED7,TMED7-TICAM2,TRIM36"
TCGA.AA.3844	5	114117179	115422933	458	0.3138	NEUTRAL	NA	13	"AP3S1,ARL14EPL,ATG12,CCDC112,CDO1,COMMD10,FEM1C,LVRN,PGGT1B,TICAM2,TMED7,TMED7-TICAM2,TRIM36"
TCGA.CA.5256	5	114231986	180692832	21901	0.001	NEUTRAL	NA	488	Too-Many
TCGA.AA.3713	5	114375340	180692832	22004	-0.0036	NEUTRAL	NA	488	Too-Many
TCGA.A6.2683	5	114389825	180692832	21981	-0.0664	NEUTRAL	NA	488	Too-Many
TCGA.AA.A00F.01A	5	114466252	114515603	11	-0.0465	NEUTRAL	NA	1	TRIM36
TCGA.AA.A017.01A	5	114466252	115782269	74	-0.0783	NEUTRAL	NA	14	"AP3S1,ARL14EPL,ATG12,CCDC112,CDO1,COMMD10,FEM1C,LVRN,PGGT1B,SEMA6A,TICAM2,TMED7,TMED7-TICAM2,TRIM36"
TCGA.DM.A280	5	114471069	180692832	21936	0.0021	NEUTRAL	NA	488	Too-Many
TCGA.AA.3986	5	114476385	180692832	21964	-0.0097	NEUTRAL	NA	488	Too-Many
TCGA.AA.A00F.01A	5	114548050	114598361	9	-0.371	NEUTRAL	NA	1	PGGT1B
TCGA.AA.A00F.01A	5	114603493	115205687	27	0.0614	NEUTRAL	NA	8	"AP3S1,ATG12,CCDC112,CDO1,FEM1C,TICAM2,TMED7,TMED7-TICAM2"
TCGA.AG.A00C.01A	5	114603493	115230737	27	0.2661	NEUTRAL	NA	8	"AP3S1,ATG12,CCDC112,CDO1,FEM1C,TICAM2,TMED7,TMED7-TICAM2"
TCGA.DM.A1D4	5	115050361	180692832	21779	0.0074	NEUTRAL	NA	481	Too-Many
TCGA.DM.A1HB	5	115113164	158824173	13873	0.0049	NEUTRAL	NA	335	Too-Many
TCGA.CK.5914.01A	5	115177671	118407211	57	0.2166	NEUTRAL	NA	7	"AP3S1,ARL14EPL,COMMD10,DMXL1,DTWD2,LVRN,SEMA6A"
TCGA.AG.4009.01A	5	115202314	118280223	52	-0.056	NEUTRAL	NA	6	"AP3S1,ARL14EPL,COMMD10,DTWD2,LVRN,SEMA6A"
TCGA.AG.3909.01A	5	115202314	122734830	191	0.1003	NEUTRAL	NA	22	"AP3S1,ARL14EPL,CEP120,COMMD10,DMXL1,DTWD2,FAM170A,FTMT,HSD17B4,LOC100505841,LOX,LVRN,PPIC,PRDM6,PRR16,SEMA6A,SNCAIP,SNX2,SNX24,SRFBP1,TNFAIP8,ZNF474"
TCGA.AA.A00F.01A	5	115230737	118433657	38	-0.3467	NEUTRAL	NA	7	"AP3S1,ARL14EPL,COMMD10,DMXL1,DTWD2,LVRN,SEMA6A"
TCGA.AG.A00C.01A	5	115238535	118183746	46	-0.2697	NEUTRAL	NA	6	"AP3S1,ARL14EPL,COMMD10,DTWD2,LVRN,SEMA6A"
TCGA.EI.6510	5	115322821	180692832	21643	0.019	NEUTRAL	NA	478	Too-Many
TCGA.AA.3844	5	115425028	115501791	28	-0.006	NEUTRAL	NA	1	COMMD10
TCGA.AA.3844	5	115512124	115657910	72	-0.0055	NEUTRAL	NA	1	COMMD10
TCGA.AA.3941	5	115523004	115596276	25	0.0234	NEUTRAL	NA	1	COMMD10
TCGA.AA.3850	5	115630003	116310655	383	0.01565	NEUTRAL	NA	1	SEMA6A
TCGA.AA.3941	5	115639861	116342777	385	-0.0162	NEUTRAL	NA	1	SEMA6A
TCGA.AA.3844	5	115659963	115879835	139	0.3566	NEUTRAL	NA	1	SEMA6A
TCGA.AA.A017.01A	5	115818093	118468777	27	-0.1754	NEUTRAL	NA	3	"DMXL1,DTWD2,SEMA6A"
TCGA.AA.3844	5	115884824	115888194	7	-0.3811	NEUTRAL	NA	1	SEMA6A
TCGA.AG.A02N	5	115940548	180692832	21337	0.0037	NEUTRAL	NA	474	Too-Many
TCGA.NH.A50U	5	115962365	179278201	20946	-0.4443	NEUTRAL	NA	454	Too-Many
TCGA.AA.3844	5	116265086	116376713	33	0.3081	NEUTRAL	NA	0	None
TCGA.AA.3844	5	116396230	117524474	388	0.0381	NEUTRAL	NA	0	None
TCGA.AA.3994	5	117318317	118132649	300	0.0499	NEUTRAL	NA	0	None
TCGA.DM.A28G	5	117318317	180692832	20775	0.0067	NEUTRAL	NA	474	Too-Many
TCGA.F4.6460	5	117529389	164965826	15138	0.0149	NEUTRAL	NA	346	Too-Many
TCGA.AA.3844	5	117538665	117886182	101	-0.0586	NEUTRAL	NA	0	None
TCGA.AA.3941	5	117569605	118167650	231	-0.4632	NEUTRAL	NA	0	None
TCGA.AA.3850	5	117569605	119266608	500	-0.23325	NEUTRAL	NA	5	"DMXL1,DTWD2,FAM170A,HSD17B4,TNFAIP8"
TCGA.A6.6140	5	117701467	118883683	332	-0.0264	NEUTRAL	NA	4	"DMXL1,DTWD2,HSD17B4,TNFAIP8"
TCGA.AA.3844	5	117888911	119124981	379	0.2831	NEUTRAL	NA	5	"DMXL1,DTWD2,FAM170A,HSD17B4,TNFAIP8"
TCGA.AA.3941	5	118167989	118223721	11	0.3446	NEUTRAL	NA	1	DTWD2
TCGA.AA.3560	5	118178145	118506684	36	0.2984	NEUTRAL	NA	2	"DMXL1,DTWD2"
TCGA.AG.A00C.01A	5	118264205	118479529	18	0.209	NEUTRAL	NA	2	"DMXL1,DTWD2"
TCGA.CM.4750.01A	5	118280223	180686963	3958	-0.1234	NEUTRAL	NA	474	Too-Many
TCGA.AG.3891.01A	5	118310227	118480183	16	0.0977	NEUTRAL	NA	2	"DMXL1,DTWD2"
TCGA.AA.A00F.01A	5	118437614	118469192	10	0.0497	NEUTRAL	NA	1	DMXL1
TCGA.AA.3860	5	118468657	118658730	43	-0.3798	NEUTRAL	NA	2	"DMXL1,TNFAIP8"
TCGA.AA.A00N.01A	5	118468777	118487582	9	-0.1288	NEUTRAL	NA	1	DMXL1
TCGA.CK.5914.01A	5	118468777	118556140	25	-0.0032	NEUTRAL	NA	1	DMXL1
TCGA.AG.3906.01A	5	118468777	125759244	155	-0.09	NEUTRAL	NA	19	"CEP120,CSNK1G3,DMXL1,FAM170A,FTMT,GRAMD3,HSD17B4,LOC100505841,LOX,PPIC,PRDM6,PRR16,SNCAIP,SNX2,SNX24,SRFBP1,TNFAIP8,ZNF474,ZNF608"
TCGA.AG.4009.01A	5	118468777	126791065	228	-0.1399	NEUTRAL	NA	26	"ALDH7A1,C5orf63,CEP120,CSNK1G3,DMXL1,FAM170A,FTMT,GRAMD3,HSD17B4,LMNB1,LOC100505841,LOX,MARCH3,MEGF10,PHAX,PPIC,PRDM6,PRR16,SNCAIP,SNX2,SNX24,SRFBP1,TEX43,TNFAIP8,ZNF474,ZNF608"
TCGA.AA.A017.01A	5	118469192	118844814	49	0.3513	NEUTRAL	NA	3	"DMXL1,HSD17B4,TNFAIP8"
TCGA.AA.A00F.01A	5	118469913	122949998	125	-0.332	NEUTRAL	NA	17	"CEP120,CSNK1G3,DMXL1,FAM170A,FTMT,HSD17B4,LOC100505841,LOX,PPIC,PRDM6,PRR16,SNCAIP,SNX2,SNX24,SRFBP1,TNFAIP8,ZNF474"
TCGA.AA.3941	5	118470718	118688114	66	0.0719	NEUTRAL	NA	2	"DMXL1,TNFAIP8"
TCGA.AG.A00C.01A	5	118480183	125906421	174	-0.1444	NEUTRAL	NA	20	"ALDH7A1,CEP120,CSNK1G3,DMXL1,FAM170A,FTMT,GRAMD3,HSD17B4,LOC100505841,LOX,PPIC,PRDM6,PRR16,SNCAIP,SNX2,SNX24,SRFBP1,TNFAIP8,ZNF474,ZNF608"
TCGA.AG.3891.01A	5	118482480	122154464	96	-0.2732	NEUTRAL	NA	12	"DMXL1,FAM170A,FTMT,HSD17B4,LOC100505841,LOX,PRR16,SNCAIP,SNX2,SRFBP1,TNFAIP8,ZNF474"
TCGA.AA.A010.01A	5	118500155	122110747	85	0.0487	NEUTRAL	NA	12	"DMXL1,FAM170A,FTMT,HSD17B4,LOC100505841,LOX,PRR16,SNCAIP,SNX2,SRFBP1,TNFAIP8,ZNF474"
TCGA.CK.5914.01A	5	118556646	118791935	12	0.3647	NEUTRAL	NA	3	"DMXL1,HSD17B4,TNFAIP8"
TCGA.AA.3815.01A	5	118582663	131347126	432	-0.0873	NEUTRAL	NA	42	"ACSL6,ADAMTS19,ALDH7A1,C5orf63,CDC42SE2,CEP120,CHSY3,CSNK1G3,CTXN3,DMXL1,FAM170A,FBN2,FNIP1,FTMT,GRAMD3,HINT1,HSD17B4,ISOC1,KIAA1024L,LMNB1,LOC100505841,LOX,LYRM7,MARCH3,MEGF10,MEIKIN,PHAX,PPIC,PRDM6,PRR16,PRRC1,RAPGEF6,SLC12A2,SLC27A6,SNCAIP,SNX2,SNX24,SRFBP1,TEX43,TNFAIP8,ZNF474,ZNF608"
TCGA.AA.3860	5	118660499	119314601	201	-0.381	NEUTRAL	NA	3	"FAM170A,HSD17B4,TNFAIP8"
TCGA.AA.3941	5	118802220	119265388	140	-0.3074	NEUTRAL	NA	2	"FAM170A,HSD17B4"
TCGA.AA.A00N.01A	5	118813083	118837660	8	-0.2633	NEUTRAL	NA	1	HSD17B4
TCGA.CK.5914.01A	5	118837660	118865566	8	-0.4513	NEUTRAL	NA	1	HSD17B4
TCGA.AA.A017.01A	5	118850607	122949998	95	0.0976	NEUTRAL	NA	15	"CEP120,CSNK1G3,FAM170A,FTMT,HSD17B4,LOC100505841,LOX,PPIC,PRDM6,PRR16,SNCAIP,SNX2,SNX24,SRFBP1,ZNF474"
TCGA.CK.5914.01A	5	118866912	121362620	17	0.15	NEUTRAL	NA	5	"FAM170A,FTMT,HSD17B4,PRR16,SRFBP1"
TCGA.AF.5654	5	118961620	180692832	20266	-0.019	NEUTRAL	NA	470	Too-Many
TCGA.3L.AA1B	5	119016980	180692832	20259	0.1409	NEUTRAL	NA	469	Too-Many
TCGA.CM.4748	5	119028722	180692832	20274	0.0042	NEUTRAL	NA	469	Too-Many
TCGA.AA.3844	5	119127203	120962382	586	-0.034	NEUTRAL	NA	1	PRR16
TCGA.AA.3860	5	119317630	122354891	971	0.0223	NEUTRAL	NA	9	"FTMT,LOC100505841,LOX,PRR16,SNCAIP,SNX2,SNX24,SRFBP1,ZNF474"
TCGA.CA.6715	5	119629272	180692832	20015	-0.0165	NEUTRAL	NA	469	Too-Many
TCGA.F4.6807	5	120009804	130431004	3113	-0.4137	NEUTRAL	NA	31	"ADAMTS19,ALDH7A1,C5orf63,CEP120,CHSY3,CSNK1G3,CTXN3,FBN2,FTMT,GRAMD3,ISOC1,KIAA1024L,LMNB1,LOC100505841,LOX,MARCH3,MEGF10,PHAX,PPIC,PRDM6,PRR16,PRRC1,SLC12A2,SLC27A6,SNCAIP,SNX2,SNX24,SRFBP1,TEX43,ZNF474,ZNF608"
TCGA.A6.6140	5	120061857	121046898	321	-0.0458	NEUTRAL	NA	0	None
TCGA.AY.6197	5	120450596	180692832	19438	-0.0082	NEUTRAL	NA	468	Too-Many
TCGA.AA.3695	5	120664696	180692832	19787	0.0123	NEUTRAL	NA	468	Too-Many
TCGA.AA.3844	5	120998120	121152741	79	0.1771	NEUTRAL	NA	0	None
TCGA.AA.3844	5	121171921	121754724	147	0.0947	NEUTRAL	NA	6	"FTMT,LOC100505841,LOX,SNCAIP,SRFBP1,ZNF474"
TCGA.AG.3611.01A	5	121413003	125759244	73	-0.4394	NEUTRAL	NA	12	"CEP120,CSNK1G3,GRAMD3,LOC100505841,LOX,PPIC,PRDM6,SNCAIP,SNX2,SNX24,ZNF474,ZNF608"
TCGA.AA.3844	5	121756883	122475726	236	0.3707	NEUTRAL	NA	5	"PPIC,PRDM6,SNCAIP,SNX2,SNX24"
TCGA.A6.3808.01A	5	121758571	125911044	110	0.0284	NEUTRAL	NA	10	"ALDH7A1,CEP120,CSNK1G3,GRAMD3,PPIC,PRDM6,SNCAIP,SNX2,SNX24,ZNF608"
TCGA.AA.3850	5	121772922	122027047	98	-0.30915	NEUTRAL	NA	1	SNCAIP
TCGA.AA.3941	5	121772922	124737622	1048	-0.2722	NEUTRAL	NA	8	"CEP120,CSNK1G3,PPIC,PRDM6,SNCAIP,SNX2,SNX24,ZNF608"
TCGA.AA.A00N.01A	5	121788589	122343364	23	0.0447	NEUTRAL	NA	3	"SNCAIP,SNX2,SNX24"
TCGA.A6.6140	5	121803517	140137643	5216	0.0132	NEUTRAL	NA	141	Too-Many
TCGA.CA.6719	5	121882870	180692832	19325	-0.2277	NEUTRAL	NA	462	Too-Many
TCGA.AA.3850	5	122030374	122422692	110	0.32425	NEUTRAL	NA	3	"PPIC,SNX2,SNX24"
TCGA.CK.5914.01A	5	122137500	122509062	28	-0.13	NEUTRAL	NA	4	"PPIC,PRDM6,SNX2,SNX24"
TCGA.AG.3891.01A	5	122161705	122165219	3	0.3214	NEUTRAL	NA	1	SNX2
TCGA.AA.A010.01A	5	122272370	122522729	19	0.3465	NEUTRAL	NA	3	"PPIC,PRDM6,SNX24"
TCGA.AG.3891.01A	5	122272370	125801041	54	-0.2978	NEUTRAL	NA	7	"CEP120,CSNK1G3,GRAMD3,PPIC,PRDM6,SNX24,ZNF608"
TCGA.AA.3860	5	122360402	126387693	1393	-0.3726	NEUTRAL	NA	12	"ALDH7A1,C5orf63,CEP120,CSNK1G3,GRAMD3,LMNB1,MARCH3,PHAX,PPIC,PRDM6,TEX43,ZNF608"
TCGA.AA.3655	5	122388181	180692832	19232	0.0044	NEUTRAL	NA	459	Too-Many
TCGA.CK.6751	5	122398509	180692832	19119	0.003	NEUTRAL	NA	459	Too-Many
TCGA.AA.3850	5	122432489	122582974	88	-0.04925	NEUTRAL	NA	1	PRDM6
TCGA.AA.3844	5	122477873	122676340	98	0.2984	NEUTRAL	NA	1	PRDM6
TCGA.AA.3850	5	122585271	122675819	30	-0.36265	NEUTRAL	NA	0	None
TCGA.AZ.6599	5	122630229	180692832	19114	-0.0138	NEUTRAL	NA	458	Too-Many
TCGA.AA.A010.01A	5	122682185	123973500	33	-0.3144	NEUTRAL	NA	3	"CEP120,CSNK1G3,ZNF608"
TCGA.AA.A00N.01A	5	122700142	122734830	13	-0.1717	NEUTRAL	NA	1	CEP120
TCGA.AA.3850	5	122705109	123226451	142	-0.46005	NEUTRAL	NA	2	"CEP120,CSNK1G3"
TCGA.CK.5914.01A	5	122718404	122726777	6	0.3266	NEUTRAL	NA	1	CEP120
TCGA.AA.3844	5	122725496	125773330	1098	0.1855	NEUTRAL	NA	4	"CEP120,CSNK1G3,GRAMD3,ZNF608"
TCGA.D5.6932	5	122871485	162339572	12608	0.0554	NEUTRAL	NA	325	Too-Many
TCGA.AG.3909.01A	5	122881336	123976897	16	0.0176	NEUTRAL	NA	2	"CSNK1G3,ZNF608"
TCGA.NH.A6GC	5	123240428	127315695	1380	0.256	NEUTRAL	NA	11	"ALDH7A1,C5orf63,CTXN3,GRAMD3,LMNB1,MARCH3,MEGF10,PHAX,PRRC1,TEX43,ZNF608"
TCGA.AA.3850	5	123261615	123378495	39	-0.37345	NEUTRAL	NA	0	None
TCGA.G4.6626	5	123453364	180692832	18895	-0.0548	NEUTRAL	NA	456	Too-Many
TCGA.AA.3850	5	123461429	124559083	431	-0.15275	NEUTRAL	NA	1	ZNF608
TCGA.AA.A00F.01A	5	123973500	123985246	7	0.0595	NEUTRAL	NA	1	ZNF608
TCGA.AA.A017.01A	5	123973500	124079745	9	-0.4658	NEUTRAL	NA	1	ZNF608
TCGA.CK.5914.01A	5	123973500	124079745	9	-0.339	NEUTRAL	NA	1	ZNF608
TCGA.AG.A014.01A	5	123973500	126171849	55	0.1113	NEUTRAL	NA	6	"ALDH7A1,GRAMD3,LMNB1,PHAX,TEX43,ZNF608"
TCGA.AZ.4684.01A	5	123973500	126213830	66	-0.3987	NEUTRAL	NA	7	"ALDH7A1,GRAMD3,LMNB1,MARCH3,PHAX,TEX43,ZNF608"
TCGA.AA.A010.01A	5	123974788	126705571	71	0.2267	NEUTRAL	NA	9	"ALDH7A1,C5orf63,GRAMD3,LMNB1,MARCH3,MEGF10,PHAX,TEX43,ZNF608"
TCGA.AG.3909.01A	5	123979166	125759244	7	-0.4171	NEUTRAL	NA	2	"GRAMD3,ZNF608"
TCGA.AG.A01W.01A	5	124007825	126694849	68	-0.4853	NEUTRAL	NA	9	"ALDH7A1,C5orf63,GRAMD3,LMNB1,MARCH3,MEGF10,PHAX,TEX43,ZNF608"
TCGA.AA.A00F.01A	5	124036695	125911044	26	-0.2819	NEUTRAL	NA	3	"ALDH7A1,GRAMD3,ZNF608"
TCGA.AG.3591	5	125018356	154609661	9165	-0.2104	NEUTRAL	NA	289	Too-Many
TCGA.CL.5918	5	125278985	180692832	18134	-0.0036	NEUTRAL	NA	455	Too-Many
TCGA.AA.3850	5	125376776	125768019	142	-0.11615	NEUTRAL	NA	1	GRAMD3
TCGA.AA.3941	5	125376776	125773330	145	-0.1499	NEUTRAL	NA	1	GRAMD3
TCGA.CK.5914.01A	5	125695974	125906421	27	0.3221	NEUTRAL	NA	2	"ALDH7A1,GRAMD3"
TCGA.AA.A00K.01A	5	125695974	126171849	49	-0.0626	NEUTRAL	NA	5	"ALDH7A1,GRAMD3,LMNB1,PHAX,TEX43"
TCGA.AA.A017.01A	5	125759244	125896749	21	0.1927	NEUTRAL	NA	2	"ALDH7A1,GRAMD3"
TCGA.A6.2681	5	125780184	125855801	31	-0.4405	NEUTRAL	NA	1	GRAMD3
TCGA.AG.3611.01A	5	125801041	125971694	37	-0.1402	NEUTRAL	NA	4	"ALDH7A1,GRAMD3,PHAX,TEX43"
TCGA.AG.3906.01A	5	125801041	126140421	37	0.2874	NEUTRAL	NA	5	"ALDH7A1,GRAMD3,LMNB1,PHAX,TEX43"
TCGA.AG.3909.01A	5	125801041	127800417	169	0.3355	NEUTRAL	NA	12	"ALDH7A1,C5orf63,CTXN3,FBN2,GRAMD3,LMNB1,MARCH3,MEGF10,PHAX,PRRC1,SLC12A2,TEX43"
TCGA.AG.3891.01A	5	125805322	125971694	36	0.1947	NEUTRAL	NA	4	"ALDH7A1,GRAMD3,PHAX,TEX43"
TCGA.AA.A00L.01A	5	125824442	126250622	40	-0.1534	NEUTRAL	NA	6	"ALDH7A1,GRAMD3,LMNB1,MARCH3,PHAX,TEX43"
TCGA.A6.2681	5	125858004	138666371	3539	0.1199	NEUTRAL	NA	100	"ACSL6,ADAMTS19,AFF4,ALDH7A1,BRD8,C5orf15,C5orf24,C5orf63,C5orf66,CAMLG,CATSPER3,CCNI2,CDC23,CDC25C,CDC42SE2,CDKL3,CDKN2AIPNL,CHSY3,CSF2,CTNNA1,CTXN3,CXCL14,DCANP1,DDX46,EGR1,ETF1,FAM13B,FAM53C,FBN2,FBXL21,FNIP1,FSTL4,GDF9,GFRA3,H2AFY,HINT1,HNRNPA0,HSPA4,HSPA9,IL13,IL3,IL4,IL5,IL9,IRF1,ISOC1,JADE2,KDM3B,KIAA1024L,KIF20A,KIF3A,KLHL3,LEAP2,LECT2,LMNB1,LRRTM2,LYRM7,MARCH3,MATR3,MEGF10,MEIKIN,MYOT,NEUROG1,NME5,P4HA2,PCBD2,PDLIM4,PHAX,PITX1,PKD2L2,PPP2CA,PRRC1,RAD50,RAPGEF6,REEP2,SAR1B,SEC24A,SEPT8,SHROOM1,SIL1,SKP1,SLC12A2,SLC22A4,SLC22A5,SLC25A48,SLC27A6,SMAD5,SOWAHA,SPOCK1,TCF7,TEX43,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,WNT8A,ZCCHC10"
TCGA.AA.A00D.01A	5	125891564	126213830	32	-0.096	NEUTRAL	NA	5	"ALDH7A1,LMNB1,MARCH3,PHAX,TEX43"
TCGA.AA.A00Q.01A	5	125891564	126250622	33	-0.1528	NEUTRAL	NA	5	"ALDH7A1,LMNB1,MARCH3,PHAX,TEX43"
TCGA.AG.A00C.01A	5	125911044	126141214	16	0.2922	NEUTRAL	NA	4	"ALDH7A1,LMNB1,PHAX,TEX43"
TCGA.AA.A00F.01A	5	125912723	125971694	14	0.052	NEUTRAL	NA	3	"ALDH7A1,PHAX,TEX43"
TCGA.AA.A00N.01A	5	125967373	125971694	3	-0.3807	NEUTRAL	NA	1	TEX43
TCGA.AA.A00N.01A	5	126113149	126161631	9	0.0047	NEUTRAL	NA	1	LMNB1
TCGA.AA.A00F.01A	5	126140421	126792773	38	-0.4626	NEUTRAL	NA	4	"C5orf63,LMNB1,MARCH3,MEGF10"
TCGA.AG.3891.01A	5	126140421	129519900	178	-0.3287	NEUTRAL	NA	13	"ADAMTS19,C5orf63,CHSY3,CTXN3,FBN2,ISOC1,KIAA1024L,LMNB1,MARCH3,MEGF10,PRRC1,SLC12A2,SLC27A6"
TCGA.AG.3611.01A	5	126140421	132559799	424	-0.4277	NEUTRAL	NA	43	"ACSL6,ADAMTS19,AFF4,C5orf63,CCNI2,CDC42SE2,CHSY3,CSF2,CTXN3,FBN2,FNIP1,FSTL4,GDF9,HINT1,HSPA4,IL13,IL3,IL4,IL5,IRF1,ISOC1,KIAA1024L,KIF3A,LEAP2,LMNB1,LYRM7,MARCH3,MEGF10,MEIKIN,P4HA2,PDLIM4,PRRC1,RAD50,RAPGEF6,SEPT8,SHROOM1,SLC12A2,SLC22A4,SLC22A5,SLC27A6,SOWAHA,UQCRQ,ZCCHC10"
TCGA.AA.A017.01A	5	126140421	180686963	3312	-0.0495	NEUTRAL	NA	451	Too-Many
TCGA.AA.A02K.01A	5	126140422	134059210	544	0.3454	NEUTRAL	NA	54	"ACSL6,ADAMTS19,AFF4,C5orf15,C5orf63,CCNI2,CDC42SE2,CDKL3,CDKN2AIPNL,CHSY3,CSF2,CTXN3,FBN2,FNIP1,FSTL4,GDF9,HINT1,HSPA4,IL13,IL3,IL4,IL5,IRF1,ISOC1,JADE2,KIAA1024L,KIF3A,LEAP2,LMNB1,LYRM7,MARCH3,MEGF10,MEIKIN,P4HA2,PDLIM4,PPP2CA,PRRC1,RAD50,RAPGEF6,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC12A2,SLC22A4,SLC22A5,SLC27A6,SOWAHA,TCF7,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AG.3906.01A	5	126141214	126792773	37	-0.1206	NEUTRAL	NA	4	"C5orf63,LMNB1,MARCH3,MEGF10"
TCGA.AG.A00C.01A	5	126145823	126206278	9	-0.0908	NEUTRAL	NA	2	"LMNB1,MARCH3"
TCGA.AA.A02H.01A	5	126145823	131554191	266	-0.0913	NEUTRAL	NA	23	"ACSL6,ADAMTS19,C5orf63,CDC42SE2,CHSY3,CSF2,CTXN3,FBN2,FNIP1,HINT1,IL3,ISOC1,KIAA1024L,LMNB1,LYRM7,MARCH3,MEGF10,MEIKIN,P4HA2,PRRC1,RAPGEF6,SLC12A2,SLC27A6"
TCGA.AG.A014.01A	5	126206278	127681061	104	-0.3282	NEUTRAL	NA	7	"C5orf63,CTXN3,FBN2,MARCH3,MEGF10,PRRC1,SLC12A2"
TCGA.A6.3808.01A	5	126206278	128351528	127	0.2901	NEUTRAL	NA	8	"C5orf63,CTXN3,FBN2,MARCH3,MEGF10,PRRC1,SLC12A2,SLC27A6"
TCGA.AA.A00K.01A	5	126206278	180686963	2962	-0.3562	NEUTRAL	NA	450	Too-Many
TCGA.AG.A00C.01A	5	126213830	126783202	23	-0.4961	NEUTRAL	NA	3	"C5orf63,MARCH3,MEGF10"
TCGA.AA.A00D.01A	5	126250622	134094540	477	-0.5069	NEUTRAL	NA	55	"ACSL6,ADAMTS19,AFF4,C5orf15,C5orf63,CAMLG,CCNI2,CDC42SE2,CDKL3,CDKN2AIPNL,CHSY3,CSF2,CTXN3,DDX46,FBN2,FNIP1,FSTL4,GDF9,HINT1,HSPA4,IL13,IL3,IL4,IL5,IRF1,ISOC1,JADE2,KIAA1024L,KIF3A,LEAP2,LYRM7,MARCH3,MEGF10,MEIKIN,P4HA2,PDLIM4,PPP2CA,PRRC1,RAD50,RAPGEF6,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC12A2,SLC22A4,SLC22A5,SLC27A6,SOWAHA,TCF7,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AA.3941	5	126254479	126396137	23	-0.0151	NEUTRAL	NA	2	"C5orf63,MARCH3"
TCGA.AA.3850	5	126260523	127806480	406	-0.13775	NEUTRAL	NA	7	"C5orf63,CTXN3,FBN2,MARCH3,MEGF10,PRRC1,SLC12A2"
TCGA.AA.3844	5	126267350	130300593	990	0.1784	NEUTRAL	NA	12	"ADAMTS19,C5orf63,CHSY3,CTXN3,FBN2,ISOC1,KIAA1024L,MARCH3,MEGF10,PRRC1,SLC12A2,SLC27A6"
TCGA.AA.3860	5	126394483	168366557	13586	0.0136	NEUTRAL	NA	326	Too-Many
TCGA.AA.3941	5	126399713	130362466	986	-0.3682	NEUTRAL	NA	11	"ADAMTS19,C5orf63,CHSY3,CTXN3,FBN2,ISOC1,KIAA1024L,MEGF10,PRRC1,SLC12A2,SLC27A6"
TCGA.AG.A01W.01A	5	126702665	131338293	233	-0.1329	NEUTRAL	NA	17	"ACSL6,ADAMTS19,CDC42SE2,CHSY3,CTXN3,FBN2,FNIP1,HINT1,ISOC1,KIAA1024L,LYRM7,MEGF10,MEIKIN,PRRC1,RAPGEF6,SLC12A2,SLC27A6"
TCGA.AA.A010.01A	5	126774093	126792773	9	0.0771	NEUTRAL	NA	1	MEGF10
TCGA.AG.A00C.01A	5	126784739	126792773	4	-0.0519	NEUTRAL	NA	1	MEGF10
TCGA.AA.A00F.01A	5	126859145	126865969	4	0.1025	NEUTRAL	NA	1	PRRC1
TCGA.AG.A00C.01A	5	126859145	126887350	8	0.3543	NEUTRAL	NA	1	PRRC1
TCGA.AA.A01C.01A	5	126859145	129072719	135	-0.1069	NEUTRAL	NA	7	"ADAMTS19,CTXN3,FBN2,ISOC1,PRRC1,SLC12A2,SLC27A6"
TCGA.AG.3906.01A	5	126865969	131066565	189	-0.1132	NEUTRAL	NA	14	"ADAMTS19,CDC42SE2,CHSY3,CTXN3,FBN2,FNIP1,HINT1,ISOC1,KIAA1024L,LYRM7,PRRC1,RAPGEF6,SLC12A2,SLC27A6"
TCGA.AA.A00F.01A	5	126869278	132056249	311	-0.3247	NEUTRAL	NA	28	"ACSL6,ADAMTS19,CDC42SE2,CHSY3,CSF2,CTXN3,FBN2,FNIP1,HINT1,IL13,IL3,IL4,IL5,IRF1,ISOC1,KIAA1024L,KIF3A,LYRM7,MEIKIN,P4HA2,PDLIM4,PRRC1,RAD50,RAPGEF6,SLC12A2,SLC22A4,SLC22A5,SLC27A6"
TCGA.AA.A00N.01A	5	126874705	127450224	8	0.0391	NEUTRAL	NA	3	"CTXN3,PRRC1,SLC12A2"
TCGA.AA.A010.01A	5	126993217	127670819	63	-0.0745	NEUTRAL	NA	3	"CTXN3,FBN2,SLC12A2"
TCGA.AG.4009.01A	5	126993217	127854927	87	-0.1465	NEUTRAL	NA	3	"CTXN3,FBN2,SLC12A2"
TCGA.AG.A00C.01A	5	126993217	132056249	308	-0.1625	NEUTRAL	NA	27	"ACSL6,ADAMTS19,CDC42SE2,CHSY3,CSF2,CTXN3,FBN2,FNIP1,HINT1,IL13,IL3,IL4,IL5,IRF1,ISOC1,KIAA1024L,KIF3A,LYRM7,MEIKIN,P4HA2,PDLIM4,RAD50,RAPGEF6,SLC12A2,SLC22A4,SLC22A5,SLC27A6"
TCGA.NH.A6GC	5	127325205	180692832	17543	0.2241	NEUTRAL	NA	445	Too-Many
TCGA.A6.5656	5	127493205	180692832	17490	-0.0079	NEUTRAL	NA	445	Too-Many
TCGA.AA.A00N.01A	5	127493693	127522166	12	0.0272	NEUTRAL	NA	1	SLC12A2
TCGA.AG.A01L.01A	5	127514212	127520423	5	-0.4441	NEUTRAL	NA	1	SLC12A2
TCGA.AA.3496	5	127516699	180692832	17487	0.0115	NEUTRAL	NA	445	Too-Many
TCGA.AG.A01L.01A	5	127522166	137216428	592	0.1819	NEUTRAL	NA	72	"ACSL6,ADAMTS19,AFF4,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CDC42SE2,CDKL3,CDKN2AIPNL,CHSY3,CSF2,CXCL14,DCANP1,DDX46,FBN2,FBXL21,FNIP1,FSTL4,GDF9,H2AFY,HINT1,HNRNPA0,HSPA4,IL13,IL3,IL4,IL5,IL9,IRF1,ISOC1,JADE2,KIAA1024L,KIF3A,KLHL3,LEAP2,LECT2,LYRM7,MEIKIN,MYOT,NEUROG1,P4HA2,PCBD2,PDLIM4,PITX1,PPP2CA,RAD50,RAPGEF6,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC12A2,SLC22A4,SLC22A5,SLC25A48,SLC27A6,SMAD5,SOWAHA,SPOCK1,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.CK.5914.01A	5	127611688	127697365	40	0.2355	NEUTRAL	NA	1	FBN2
TCGA.AY.A71X	5	127627208	180692832	17485	-0.0359	NEUTRAL	NA	444	Too-Many
TCGA.CM.6170	5	127635866	127693524	21	0.1125	NEUTRAL	NA	1	FBN2
TCGA.AA.A01F.01A	5	127664346	127671633	6	-0.3013	NEUTRAL	NA	1	FBN2
TCGA.AA.A01F.01A	5	127673637	137878476	627	0.1243	NEUTRAL	NA	85	"ACSL6,ADAMTS19,AFF4,BRD8,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CDC23,CDC25C,CDC42SE2,CDKL3,CDKN2AIPNL,CHSY3,CSF2,CXCL14,DCANP1,DDX46,EGR1,ETF1,FAM13B,FAM53C,FBN2,FBXL21,FNIP1,FSTL4,GDF9,GFRA3,H2AFY,HINT1,HNRNPA0,HSPA4,IL13,IL3,IL4,IL5,IL9,IRF1,ISOC1,JADE2,KDM3B,KIAA1024L,KIF20A,KIF3A,KLHL3,LEAP2,LECT2,LYRM7,MEIKIN,MYOT,NEUROG1,NME5,P4HA2,PCBD2,PDLIM4,PITX1,PKD2L2,PPP2CA,RAD50,RAPGEF6,REEP2,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC22A4,SLC22A5,SLC25A48,SLC27A6,SMAD5,SOWAHA,SPOCK1,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,WNT8A,ZCCHC10"
TCGA.AG.A014.01A	5	127692931	131323689	130	-0.2874	NEUTRAL	NA	13	"ACSL6,ADAMTS19,CDC42SE2,CHSY3,FBN2,FNIP1,HINT1,ISOC1,KIAA1024L,LYRM7,MEIKIN,RAPGEF6,SLC27A6"
TCGA.AA.A010.01A	5	127702000	130726636	69	-0.0661	NEUTRAL	NA	9	"ADAMTS19,CDC42SE2,CHSY3,FBN2,HINT1,ISOC1,KIAA1024L,LYRM7,SLC27A6"
TCGA.CK.5914.01A	5	127782147	131289896	107	-0.0347	NEUTRAL	NA	13	"ACSL6,ADAMTS19,CDC42SE2,CHSY3,FBN2,FNIP1,HINT1,ISOC1,KIAA1024L,LYRM7,MEIKIN,RAPGEF6,SLC27A6"
TCGA.AG.3909.01A	5	127854927	128796794	21	-0.3002	NEUTRAL	NA	4	"ADAMTS19,FBN2,ISOC1,SLC27A6"
TCGA.AA.A00N.01A	5	127854927	131545948	141	0.3099	NEUTRAL	NA	16	"ACSL6,ADAMTS19,CDC42SE2,CHSY3,CSF2,FBN2,FNIP1,HINT1,IL3,ISOC1,KIAA1024L,LYRM7,MEIKIN,P4HA2,RAPGEF6,SLC27A6"
TCGA.AG.4009.01A	5	128301781	128430438	11	0.0549	NEUTRAL	NA	1	SLC27A6
TCGA.CM.6170	5	128374859	151658201	7165	0.051	NEUTRAL	NA	263	Too-Many
TCGA.AG.4009.01A	5	128796794	129070603	21	-0.0964	NEUTRAL	NA	1	ADAMTS19
TCGA.A6.3808.01A	5	129015410	131729331	136	-0.0951	NEUTRAL	NA	16	"ACSL6,ADAMTS19,CDC42SE2,CHSY3,CSF2,FNIP1,HINT1,IL3,KIAA1024L,LYRM7,MEIKIN,P4HA2,PDLIM4,RAPGEF6,SLC22A4,SLC22A5"
TCGA.AA.3866	5	129100423	173423691	14995	0.2298	NEUTRAL	NA	349	Too-Many
TCGA.AA.3678	5	129196637	180692832	17061	-0.0055	NEUTRAL	NA	439	Too-Many
TCGA.AA.A01C.01A	5	129240952	134060620	351	-0.3861	NEUTRAL	NA	42	"ACSL6,AFF4,C5orf15,CCNI2,CDC42SE2,CDKL3,CDKN2AIPNL,CHSY3,CSF2,FNIP1,FSTL4,GDF9,HINT1,HSPA4,IL13,IL3,IL4,IL5,IRF1,JADE2,KIF3A,LEAP2,LYRM7,MEIKIN,P4HA2,PDLIM4,PPP2CA,RAD50,RAPGEF6,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC22A4,SLC22A5,SOWAHA,TCF7,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.DM.A28M.01A	5	129243720	132035885	183	0.1995	NEUTRAL	NA	20	"ACSL6,CDC42SE2,CHSY3,CSF2,FNIP1,HINT1,IL13,IL3,IL4,IL5,IRF1,KIF3A,LYRM7,MEIKIN,P4HA2,PDLIM4,RAD50,RAPGEF6,SLC22A4,SLC22A5"
TCGA.RU.A8FL	5	129475876	180692832	16981	0	NEUTRAL	NA	439	Too-Many
TCGA.AM.5820	5	129767013	130564323	115	-0.0665	NEUTRAL	NA	2	"HINT1,LYRM7"
TCGA.DM.A1D9	5	129817918	151578135	6795	0.0285	NEUTRAL	NA	259	Too-Many
TCGA.AH.6903	5	129817918	180692832	16892	0.0024	NEUTRAL	NA	438	Too-Many
TCGA.DY.A1DC	5	130079950	145039219	4307	-0.0056	NEUTRAL	NA	190	Too-Many
TCGA.AA.3982	5	130304208	131051327	129	0.2818	NEUTRAL	NA	5	"CDC42SE2,FNIP1,HINT1,LYRM7,RAPGEF6"
TCGA.AA.3811	5	130358470	142725083	3524	-0.2212	NEUTRAL	NA	187	Too-Many
TCGA.AA.3941	5	130370969	135268729	1511	0.3027	NEUTRAL	NA	57	"ACSL6,AFF4,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CDC42SE2,CDKL3,CDKN2AIPNL,CSF2,CXCL14,DCANP1,DDX46,FBXL21,FNIP1,FSTL4,GDF9,H2AFY,HINT1,HSPA4,IL13,IL3,IL4,IL5,IL9,IRF1,JADE2,KIF3A,LEAP2,LYRM7,MEIKIN,NEUROG1,P4HA2,PCBD2,PDLIM4,PITX1,PPP2CA,RAD50,RAPGEF6,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC22A4,SLC22A5,SLC25A48,SOWAHA,TCF7,TIFAB,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AA.3850	5	130392786	135632309	1660	0.28775	NEUTRAL	NA	61	"ACSL6,AFF4,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CDC42SE2,CDKL3,CDKN2AIPNL,CSF2,CXCL14,DCANP1,DDX46,FBXL21,FNIP1,FSTL4,GDF9,H2AFY,HINT1,HSPA4,IL13,IL3,IL4,IL5,IL9,IRF1,JADE2,KIF3A,LEAP2,LECT2,LYRM7,MEIKIN,NEUROG1,P4HA2,PCBD2,PDLIM4,PITX1,PPP2CA,RAD50,RAPGEF6,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC22A4,SLC22A5,SLC25A48,SMAD5,SOWAHA,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.F4.6807	5	130437683	180692832	16805	-0.0665	NEUTRAL	NA	438	Too-Many
TCGA.AA.3509.01A	5	130495089	132037730	182	0.0102	NEUTRAL	NA	19	"ACSL6,CDC42SE2,CSF2,FNIP1,HINT1,IL13,IL3,IL4,IL5,IRF1,KIF3A,LYRM7,MEIKIN,P4HA2,PDLIM4,RAD50,RAPGEF6,SLC22A4,SLC22A5"
TCGA.AZ.4684.01A	5	130495089	132038253	183	-0.0721	NEUTRAL	NA	19	"ACSL6,CDC42SE2,CSF2,FNIP1,HINT1,IL13,IL3,IL4,IL5,IRF1,KIF3A,LYRM7,MEIKIN,P4HA2,PDLIM4,RAD50,RAPGEF6,SLC22A4,SLC22A5"
TCGA.AG.3891.01A	5	130495089	138643868	710	0.0481	NEUTRAL	NA	84	"ACSL6,AFF4,BRD8,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CDC23,CDC25C,CDC42SE2,CDKL3,CDKN2AIPNL,CSF2,CTNNA1,CXCL14,DCANP1,DDX46,EGR1,ETF1,FAM13B,FAM53C,FBXL21,FNIP1,FSTL4,GDF9,GFRA3,H2AFY,HINT1,HNRNPA0,HSPA4,HSPA9,IL13,IL3,IL4,IL5,IL9,IRF1,JADE2,KDM3B,KIF20A,KIF3A,KLHL3,LEAP2,LECT2,LRRTM2,LYRM7,MATR3,MEIKIN,MYOT,NEUROG1,NME5,P4HA2,PCBD2,PDLIM4,PITX1,PKD2L2,PPP2CA,RAD50,RAPGEF6,REEP2,SAR1B,SEC24A,SEPT8,SHROOM1,SIL1,SKP1,SLC22A4,SLC22A5,SLC25A48,SMAD5,SOWAHA,SPOCK1,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,WNT8A,ZCCHC10"
TCGA.AG.3909.01A	5	130506632	132056249	177	0.1657	NEUTRAL	NA	18	"ACSL6,CDC42SE2,CSF2,FNIP1,IL13,IL3,IL4,IL5,IRF1,KIF3A,LYRM7,MEIKIN,P4HA2,PDLIM4,RAD50,RAPGEF6,SLC22A4,SLC22A5"
TCGA.AG.4009.01A	5	130515748	131325053	69	-0.0295	NEUTRAL	NA	6	"ACSL6,CDC42SE2,FNIP1,LYRM7,MEIKIN,RAPGEF6"
TCGA.AM.5820	5	130588549	131288467	99	-0.1814	NEUTRAL	NA	5	"ACSL6,CDC42SE2,FNIP1,MEIKIN,RAPGEF6"
TCGA.AA.3522	5	130747382	180692832	16787	0.0124	NEUTRAL	NA	435	Too-Many
TCGA.AH.6549.01A	5	130764563	180374474	3465	0.2541	NEUTRAL	NA	427	Too-Many
TCGA.AA.3982	5	131055545	131315224	32	-0.0768	NEUTRAL	NA	3	"ACSL6,FNIP1,MEIKIN"
TCGA.AG.3906.01A	5	131080218	131539712	34	0.1111	NEUTRAL	NA	6	"ACSL6,CSF2,FNIP1,IL3,MEIKIN,P4HA2"
TCGA.AG.A00Y.01A	5	131080218	140165824	858	0.1381	NEUTRAL	NA	114	Too-Many
TCGA.A6.5661	5	131152574	142049228	3114	-0.3155	NEUTRAL	NA	180	Too-Many
TCGA.AA.3556	5	131152574	180692832	16698	-0.0593	NEUTRAL	NA	433	Too-Many
TCGA.CK.5914.01A	5	131295164	131552843	38	0.3125	NEUTRAL	NA	4	"ACSL6,CSF2,IL3,P4HA2"
TCGA.AA.A010.01A	5	131296172	131347519	20	-0.0914	NEUTRAL	NA	1	ACSL6
TCGA.AA.A00L.01A	5	131308907	131534512	22	-0.1645	NEUTRAL	NA	4	"ACSL6,CSF2,IL3,P4HA2"
TCGA.AA.3982	5	131315883	131447103	54	0.3192	NEUTRAL	NA	3	"ACSL6,CSF2,IL3"
TCGA.AG.A014.01A	5	131324210	140797400	969	0.0424	NEUTRAL	NA	161	Too-Many
TCGA.AG.4009.01A	5	131325738	131531043	11	0.2548	NEUTRAL	NA	4	"ACSL6,CSF2,IL3,P4HA2"
TCGA.AA.3815.01A	5	131347519	131543371	14	0.3398	NEUTRAL	NA	4	"ACSL6,CSF2,IL3,P4HA2"
TCGA.AG.A01W.01A	5	131357577	131572699	16	-0.4076	NEUTRAL	NA	3	"CSF2,IL3,P4HA2"
TCGA.AM.5820	5	131437531	132232314	222	0.086	NEUTRAL	NA	18	"AFF4,CCNI2,GDF9,IL13,IL4,IL5,IRF1,KIF3A,LEAP2,P4HA2,PDLIM4,RAD50,SEPT8,SHROOM1,SLC22A4,SLC22A5,SOWAHA,UQCRQ"
TCGA.AA.3844	5	131457027	131520921	11	-0.0796	NEUTRAL	NA	0	None
TCGA.AA.3982	5	131485282	135244495	1304	0.232	NEUTRAL	NA	47	"AFF4,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CDKL3,CDKN2AIPNL,CXCL14,DCANP1,DDX46,FSTL4,GDF9,H2AFY,HSPA4,IL13,IL4,IL5,IL9,IRF1,JADE2,KIF3A,LEAP2,NEUROG1,P4HA2,PCBD2,PDLIM4,PITX1,PPP2CA,RAD50,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC22A4,SLC22A5,SLC25A48,SOWAHA,TCF7,TIFAB,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AA.A010.01A	5	131530580	131593378	14	-0.3408	NEUTRAL	NA	2	"P4HA2,PDLIM4"
TCGA.AG.4009.01A	5	131533835	131545948	7	-0.0895	NEUTRAL	NA	1	P4HA2
TCGA.AG.3906.01A	5	131543371	131554191	7	-0.4094	NEUTRAL	NA	1	P4HA2
TCGA.AA.3815.01A	5	131544839	180686963	3378	-0.0042	NEUTRAL	NA	429	Too-Many
TCGA.AG.4009.01A	5	131549560	131606556	7	-0.4327	NEUTRAL	NA	2	"P4HA2,PDLIM4"
TCGA.AA.A00N.01A	5	131549560	131796262	35	-0.2544	NEUTRAL	NA	4	"P4HA2,PDLIM4,SLC22A4,SLC22A5"
TCGA.CK.5914.01A	5	131553397	131894926	48	-0.294	NEUTRAL	NA	7	"IL5,IRF1,P4HA2,PDLIM4,RAD50,SLC22A4,SLC22A5"
TCGA.AG.A01W.01A	5	131573860	131630001	7	0.3648	NEUTRAL	NA	1	PDLIM4
TCGA.AA.A02H.01A	5	131598250	140235585	814	-0.4377	NEUTRAL	NA	117	Too-Many
TCGA.AG.4009.01A	5	131606979	131705624	13	-0.0391	NEUTRAL	NA	3	"PDLIM4,SLC22A4,SLC22A5"
TCGA.AA.A010.01A	5	131630288	131713795	13	0.1023	NEUTRAL	NA	2	"SLC22A4,SLC22A5"
TCGA.AG.3906.01A	5	131630288	131785260	23	-0.0127	NEUTRAL	NA	2	"SLC22A4,SLC22A5"
TCGA.AG.A01W.01A	5	131634470	132128994	97	-0.2688	NEUTRAL	NA	10	"CCNI2,IL13,IL4,IL5,IRF1,KIF3A,RAD50,SEPT8,SLC22A4,SLC22A5"
TCGA.AG.3906.01A	5	131821893	131879010	6	0.3626	NEUTRAL	NA	2	"IL5,IRF1"
TCGA.AA.3844	5	131873072	131965108	14	0.1476	NEUTRAL	NA	2	"IL5,RAD50"
TCGA.AG.4009.01A	5	131877481	131951646	22	0.0458	NEUTRAL	NA	2	"IL5,RAD50"
TCGA.AA.A010.01A	5	131877481	132073008	57	-0.0161	NEUTRAL	NA	5	"IL13,IL4,IL5,KIF3A,RAD50"
TCGA.AA.A00L.01A	5	131878711	140051989	626	-0.3552	NEUTRAL	NA	100	"AFF4,ANKHD1,ANKHD1-EIF4EBP3,APBB3,BRD8,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CD14,CDC23,CDC25C,CDKL3,CDKN2AIPNL,CTNNA1,CXCL14,CXXC5,CYSTM1,DCANP1,DDX46,DNAJC18,DND1,ECSCR,EGR1,EIF4EBP3,ETF1,FAM13B,FAM53C,FBXL21,FSTL4,GDF9,GFRA3,H2AFY,HBEGF,HNRNPA0,HSPA4,HSPA9,IGIP,IK,IL13,IL4,IL5,IL9,JADE2,KDM3B,KIF20A,KIF3A,KLHL3,LEAP2,LECT2,LRRTM2,MATR3,MYOT,MZB1,NDUFA2,NEUROG1,NME5,NRG2,PAIP2,PCBD2,PFDN1,PITX1,PKD2L2,PPP2CA,PROB1,PSD2,PURA,RAD50,REEP2,SAR1B,SEC24A,SEPT8,SHROOM1,SIL1,SKP1,SLC23A1,SLC25A48,SLC35A4,SLC4A9,SMAD5,SOWAHA,SPATA24,SPOCK1,SRA1,TCF7,TGFBI,TIFAB,TMCO6,TMEM173,TRPC7,TXNDC15,UBE2B,UBE2D2,UQCRQ,VDAC1,WDR55,WNT8A,ZCCHC10"
TCGA.AG.3906.01A	5	131892980	132073008	48	-0.1329	NEUTRAL	NA	4	"IL13,IL4,KIF3A,RAD50"
TCGA.CK.5914.01A	5	131951646	132010097	13	-0.2373	NEUTRAL	NA	3	"IL13,IL4,RAD50"
TCGA.AG.4009.01A	5	131953713	132094128	35	-0.4028	NEUTRAL	NA	6	"CCNI2,IL13,IL4,KIF3A,RAD50,SEPT8"
TCGA.AA.3861.01A	5	131973725	137517069	434	0.0111	NEUTRAL	NA	56	"AFF4,BRD8,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CDKL3,CDKN2AIPNL,CXCL14,DCANP1,DDX46,FAM13B,FBXL21,FSTL4,GDF9,H2AFY,HNRNPA0,HSPA4,IL13,IL4,IL9,JADE2,KIF20A,KIF3A,KLHL3,LEAP2,LECT2,MYOT,NEUROG1,NME5,PCBD2,PITX1,PKD2L2,PPP2CA,RAD50,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC25A48,SMAD5,SOWAHA,SPOCK1,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,WNT8A,ZCCHC10"
TCGA.AA.A00N.01A	5	132010097	132056249	18	0.3171	NEUTRAL	NA	2	"IL4,KIF3A"
TCGA.DM.A28M.01A	5	132046599	137278517	364	0.1086	NEUTRAL	NA	49	"AFF4,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CCNI2,CDKL3,CDKN2AIPNL,CXCL14,DCANP1,DDX46,FAM13B,FBXL21,FSTL4,GDF9,H2AFY,HNRNPA0,HSPA4,IL9,JADE2,KIF3A,KLHL3,LEAP2,LECT2,MYOT,NEUROG1,PCBD2,PITX1,PKD2L2,PPP2CA,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC25A48,SMAD5,SOWAHA,SPOCK1,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AA.A00F.01A	5	132061765	132097162	9	0.2511	NEUTRAL	NA	3	"CCNI2,KIF3A,SEPT8"
TCGA.AA.3509.01A	5	132069870	132233882	43	-0.0518	NEUTRAL	NA	9	"AFF4,CCNI2,GDF9,KIF3A,LEAP2,SEPT8,SHROOM1,SOWAHA,UQCRQ"
TCGA.AZ.4684.01A	5	132069870	134346032	234	-0.3808	NEUTRAL	NA	29	"AFF4,C5orf15,C5orf24,CAMLG,CATSPER3,CCNI2,CDKL3,CDKN2AIPNL,DDX46,FSTL4,GDF9,HSPA4,JADE2,KIF3A,LEAP2,PCBD2,PPP2CA,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SOWAHA,TCF7,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.NH.A6GA	5	132081896	153774170	7110	-0.0135	NEUTRAL	NA	245	Too-Many
TCGA.AA.A00N.01A	5	132096455	133685911	120	-0.1064	NEUTRAL	NA	16	"AFF4,C5orf15,CDKL3,FSTL4,GDF9,HSPA4,LEAP2,PPP2CA,SEPT8,SHROOM1,SKP1,SOWAHA,TCF7,UQCRQ,VDAC1,ZCCHC10"
TCGA.AA.A00Q.01A	5	132149336	135290403	191	-0.4749	NEUTRAL	NA	37	"AFF4,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CDKL3,CDKN2AIPNL,CXCL14,DCANP1,DDX46,FBXL21,FSTL4,GDF9,H2AFY,HSPA4,IL9,JADE2,LEAP2,LECT2,NEUROG1,PCBD2,PITX1,PPP2CA,SAR1B,SEC24A,SHROOM1,SKP1,SLC25A48,SOWAHA,TCF7,TIFAB,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AA.A00F.01A	5	132149336	137717146	339	-0.1879	NEUTRAL	NA	55	"AFF4,BRD8,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CDC23,CDC25C,CDKL3,CDKN2AIPNL,CXCL14,DCANP1,DDX46,FAM13B,FAM53C,FBXL21,FSTL4,GDF9,GFRA3,H2AFY,HNRNPA0,HSPA4,IL9,JADE2,KDM3B,KIF20A,KLHL3,LEAP2,LECT2,MYOT,NEUROG1,NME5,PCBD2,PITX1,PKD2L2,PPP2CA,SAR1B,SEC24A,SHROOM1,SKP1,SLC25A48,SMAD5,SOWAHA,SPOCK1,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,WNT8A,ZCCHC10"
TCGA.AA.A010.01A	5	132161093	133308511	70	0.2922	NEUTRAL	NA	10	"AFF4,C5orf15,FSTL4,GDF9,HSPA4,LEAP2,SHROOM1,UQCRQ,VDAC1,ZCCHC10"
TCGA.AG.A01W.01A	5	132177236	132251386	18	0.0268	NEUTRAL	NA	4	"AFF4,GDF9,LEAP2,UQCRQ"
TCGA.AG.3906.01A	5	132197234	132334278	26	-0.105	NEUTRAL	NA	5	"AFF4,GDF9,LEAP2,UQCRQ,ZCCHC10"
TCGA.AG.4009.01A	5	132197234	134154503	175	0.0013	NEUTRAL	NA	20	"AFF4,C5orf15,CAMLG,CDKL3,CDKN2AIPNL,DDX46,FSTL4,GDF9,HSPA4,JADE2,LEAP2,PPP2CA,SAR1B,SEC24A,SKP1,TCF7,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AG.A00C.01A	5	132199842	135567005	255	0.0545	NEUTRAL	NA	38	"AFF4,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CDKL3,CDKN2AIPNL,CXCL14,DCANP1,DDX46,FBXL21,FSTL4,GDF9,H2AFY,HSPA4,IL9,JADE2,LEAP2,LECT2,NEUROG1,PCBD2,PITX1,PPP2CA,SAR1B,SEC24A,SKP1,SLC25A48,SMAD5,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AG.3909.01A	5	132202532	133328572	72	0.1066	NEUTRAL	NA	9	"AFF4,C5orf15,FSTL4,GDF9,HSPA4,LEAP2,UQCRQ,VDAC1,ZCCHC10"
TCGA.CK.5914.01A	5	132209314	134143430	175	-0.0144	NEUTRAL	NA	18	"AFF4,C5orf15,CAMLG,CDKL3,CDKN2AIPNL,DDX46,FSTL4,HSPA4,JADE2,LEAP2,PPP2CA,SAR1B,SEC24A,SKP1,TCF7,UBE2B,VDAC1,ZCCHC10"
TCGA.AG.A01J.01A	5	132224718	139930604	623	-0.178	NEUTRAL	NA	80	"AFF4,ANKHD1,ANKHD1-EIF4EBP3,BRD8,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CDC23,CDC25C,CDKL3,CDKN2AIPNL,CTNNA1,CXCL14,CXXC5,CYSTM1,DCANP1,DDX46,DNAJC18,ECSCR,EGR1,EIF4EBP3,ETF1,FAM13B,FAM53C,FBXL21,FSTL4,GFRA3,H2AFY,HBEGF,HNRNPA0,HSPA4,HSPA9,IGIP,IL9,JADE2,KDM3B,KIF20A,KLHL3,LECT2,LRRTM2,MATR3,MYOT,MZB1,NEUROG1,NME5,NRG2,PAIP2,PCBD2,PFDN1,PITX1,PKD2L2,PPP2CA,PROB1,PSD2,PURA,REEP2,SAR1B,SEC24A,SIL1,SKP1,SLC23A1,SLC25A48,SLC4A9,SMAD5,SPATA24,SPOCK1,SRA1,TCF7,TGFBI,TIFAB,TMEM173,TRPC7,TXNDC15,UBE2B,UBE2D2,VDAC1,WNT8A,ZCCHC10"
TCGA.AA.3509.01A	5	132234717	134305589	186	-0.3549	NEUTRAL	NA	21	"AFF4,C5orf15,C5orf24,CAMLG,CATSPER3,CDKL3,CDKN2AIPNL,DDX46,FSTL4,HSPA4,JADE2,PCBD2,PPP2CA,SAR1B,SEC24A,SKP1,TCF7,TXNDC15,UBE2B,VDAC1,ZCCHC10"
TCGA.AM.5820	5	132244785	132435571	20	-0.4872	NEUTRAL	NA	3	"AFF4,HSPA4,ZCCHC10"
TCGA.F5.6863	5	132330052	180692832	16403	0.0038	NEUTRAL	NA	411	Too-Many
TCGA.AG.3906.01A	5	132335766	132439878	20	0.2751	NEUTRAL	NA	2	"HSPA4,ZCCHC10"
TCGA.AM.5820	5	132454439	132527097	20	0.067	NEUTRAL	NA	0	None
TCGA.AM.5820	5	132533062	133492061	512	0.2398	NEUTRAL	NA	4	"C5orf15,FSTL4,TCF7,VDAC1"
TCGA.AG.3906.01A	5	132534745	133311510	21	-0.1832	NEUTRAL	NA	3	"C5orf15,FSTL4,VDAC1"
TCGA.AG.A01W.01A	5	132562645	132573756	3	0.3749	NEUTRAL	NA	1	FSTL4
TCGA.AD.6965	5	132609516	134130856	572	0.0301	NEUTRAL	NA	14	"C5orf15,CAMLG,CDKL3,CDKN2AIPNL,DDX46,FSTL4,JADE2,PPP2CA,SAR1B,SEC24A,SKP1,TCF7,UBE2B,VDAC1"
TCGA.AG.3611.01A	5	132648299	140085169	526	-0.3087	NEUTRAL	NA	88	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,BRD8,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CD14,CDC23,CDC25C,CDKL3,CDKN2AIPNL,CTNNA1,CXCL14,CXXC5,CYSTM1,DCANP1,DDX46,DNAJC18,DND1,ECSCR,EGR1,EIF4EBP3,ETF1,FAM13B,FAM53C,FBXL21,FSTL4,GFRA3,H2AFY,HARS,HARS2,HBEGF,HNRNPA0,HSPA9,IGIP,IK,IL9,JADE2,KDM3B,KIF20A,KLHL3,LECT2,LRRTM2,MATR3,MYOT,MZB1,NDUFA2,NEUROG1,NME5,NRG2,PAIP2,PCBD2,PFDN1,PITX1,PKD2L2,PPP2CA,PROB1,PSD2,PURA,REEP2,SAR1B,SEC24A,SIL1,SKP1,SLC23A1,SLC25A48,SLC35A4,SLC4A9,SMAD5,SPATA24,SPOCK1,SRA1,TCF7,TGFBI,TIFAB,TMCO6,TMEM173,TRPC7,TXNDC15,UBE2B,UBE2D2,VDAC1,WDR55,WNT8A,ZMAT2"
TCGA.AA.3844	5	132953522	132996603	32	0.252	NEUTRAL	NA	0	None
TCGA.AG.3890	5	133038090	180692832	16046	0.1477	NEUTRAL	NA	408	Too-Many
TCGA.AA.3980.01A	5	133309414	140081543	691	-0.1431	NEUTRAL	NA	86	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,BRD8,C5orf24,C5orf66,CAMLG,CATSPER3,CD14,CDC23,CDC25C,CDKL3,CDKN2AIPNL,CTNNA1,CXCL14,CXXC5,CYSTM1,DCANP1,DDX46,DNAJC18,DND1,ECSCR,EGR1,EIF4EBP3,ETF1,FAM13B,FAM53C,FBXL21,GFRA3,H2AFY,HARS,HARS2,HBEGF,HNRNPA0,HSPA9,IGIP,IK,IL9,JADE2,KDM3B,KIF20A,KLHL3,LECT2,LRRTM2,MATR3,MYOT,MZB1,NDUFA2,NEUROG1,NME5,NRG2,PAIP2,PCBD2,PFDN1,PITX1,PKD2L2,PPP2CA,PROB1,PSD2,PURA,REEP2,SAR1B,SEC24A,SIL1,SKP1,SLC23A1,SLC25A48,SLC35A4,SLC4A9,SMAD5,SPATA24,SPOCK1,SRA1,TCF7,TGFBI,TIFAB,TMCO6,TMEM173,TRPC7,TXNDC15,UBE2B,UBE2D2,VDAC1,WDR55,WNT8A,ZMAT2"
TCGA.AD.6964	5	133443949	180692832	15885	-0.0186	NEUTRAL	NA	406	Too-Many
TCGA.AG.3906.01A	5	133473720	137754634	355	0.058	NEUTRAL	NA	44	"BRD8,C5orf24,C5orf66,CAMLG,CATSPER3,CDC23,CDC25C,CDKL3,CDKN2AIPNL,CXCL14,DCANP1,DDX46,FAM13B,FAM53C,FBXL21,GFRA3,H2AFY,HNRNPA0,IL9,JADE2,KDM3B,KIF20A,KLHL3,LECT2,MYOT,NEUROG1,NME5,PCBD2,PITX1,PKD2L2,PPP2CA,SAR1B,SEC24A,SKP1,SLC25A48,SMAD5,SPOCK1,TCF7,TGFBI,TIFAB,TRPC7,TXNDC15,UBE2B,WNT8A"
TCGA.AG.3909.01A	5	133481370	133695551	25	0.0954	NEUTRAL	NA	4	"CDKL3,PPP2CA,SKP1,TCF7"
TCGA.AM.5820	5	133493845	133737274	42	-0.2316	NEUTRAL	NA	4	"CDKL3,PPP2CA,SKP1,UBE2B"
TCGA.AM.5820	5	133745397	133857707	27	0.201	NEUTRAL	NA	1	CDKN2AIPNL
TCGA.AA.A00N.01A	5	133747286	133873630	3	-0.3614	NEUTRAL	NA	2	"CDKN2AIPNL,JADE2"
TCGA.AG.3909.01A	5	133747286	134074269	41	0.3094	NEUTRAL	NA	5	"CAMLG,CDKN2AIPNL,JADE2,SAR1B,SEC24A"
TCGA.AM.5820	5	133909059	133921002	4	0.1999	NEUTRAL	NA	1	JADE2
TCGA.AM.5820	5	133942491	134286341	38	-0.0551	NEUTRAL	NA	7	"C5orf24,CAMLG,DDX46,PCBD2,SAR1B,SEC24A,TXNDC15"
TCGA.AA.A00N.01A	5	134002521	134074269	22	0.2918	NEUTRAL	NA	2	"CAMLG,SEC24A"
TCGA.AG.3909.01A	5	134076766	134106545	7	-0.4858	NEUTRAL	NA	2	"CAMLG,DDX46"
TCGA.AA.A01C.01A	5	134079622	139201426	397	-0.3471	NEUTRAL	NA	54	"BRD8,C5orf24,C5orf66,CAMLG,CATSPER3,CDC23,CDC25C,CTNNA1,CXCL14,CXXC5,DCANP1,DDX46,DNAJC18,ECSCR,EGR1,ETF1,FAM13B,FAM53C,FBXL21,GFRA3,H2AFY,HNRNPA0,HSPA9,IL9,KDM3B,KIF20A,KLHL3,LECT2,LRRTM2,MATR3,MYOT,MZB1,NEUROG1,NME5,PAIP2,PCBD2,PITX1,PKD2L2,PROB1,PSD2,REEP2,SIL1,SLC23A1,SLC25A48,SMAD5,SPATA24,SPOCK1,TGFBI,TIFAB,TMEM173,TRPC7,TXNDC15,UBE2D2,WNT8A"
TCGA.AG.3909.01A	5	134109391	134164301	19	0.2431	NEUTRAL	NA	1	DDX46
TCGA.AA.A00D.01A	5	134116776	134146860	11	-0.4219	NEUTRAL	NA	1	DDX46
TCGA.AA.A00N.01A	5	134116776	134152090	13	0.1544	NEUTRAL	NA	1	DDX46
TCGA.AD.6965	5	134136332	180692832	15739	-0.3366	NEUTRAL	NA	396	Too-Many
TCGA.AA.A00D.01A	5	134147337	134235147	15	-0.0039	NEUTRAL	NA	3	"C5orf24,DDX46,TXNDC15"
TCGA.AA.A00N.01A	5	134153136	134164301	4	-0.3719	NEUTRAL	NA	1	DDX46
TCGA.AG.A01W.01A	5	134158413	134257065	14	-0.2732	NEUTRAL	NA	4	"C5orf24,DDX46,PCBD2,TXNDC15"
TCGA.AG.4009.01A	5	134162577	134210066	5	-0.2911	NEUTRAL	NA	3	"C5orf24,DDX46,TXNDC15"
TCGA.AA.A010.01A	5	134162577	134724563	38	-0.3136	NEUTRAL	NA	8	"C5orf24,C5orf66,CATSPER3,DDX46,H2AFY,PCBD2,PITX1,TXNDC15"
TCGA.DM.A28H	5	134250211	180692832	15741	-0.0042	NEUTRAL	NA	393	Too-Many
TCGA.AM.5820	5	134293200	135220828	393	0.3059	NEUTRAL	NA	10	"C5orf66,CATSPER3,CXCL14,DCANP1,H2AFY,NEUROG1,PCBD2,PITX1,SLC25A48,TIFAB"
TCGA.AG.4009.01A	5	134294683	134346032	9	-0.0596	NEUTRAL	NA	2	"CATSPER3,PCBD2"
TCGA.CK.5914.01A	5	134294683	135231079	37	0.2832	NEUTRAL	NA	11	"C5orf66,CATSPER3,CXCL14,DCANP1,H2AFY,IL9,NEUROG1,PCBD2,PITX1,SLC25A48,TIFAB"
TCGA.AG.3909.01A	5	134294683	135561675	71	0.1338	NEUTRAL	NA	16	"C5orf66,CATSPER3,CXCL14,DCANP1,FBXL21,H2AFY,IL9,LECT2,NEUROG1,PCBD2,PITX1,SLC25A48,SMAD5,TGFBI,TIFAB,TRPC7"
TCGA.AG.A01W.01A	5	134322603	137325936	142	-0.2883	NEUTRAL	NA	21	"C5orf66,CATSPER3,CXCL14,DCANP1,FAM13B,FBXL21,H2AFY,HNRNPA0,IL9,KLHL3,LECT2,MYOT,NEUROG1,PITX1,PKD2L2,SLC25A48,SMAD5,SPOCK1,TGFBI,TIFAB,TRPC7"
TCGA.AA.3509.01A	5	134331912	137278517	129	0.0511	NEUTRAL	NA	21	"C5orf66,CATSPER3,CXCL14,DCANP1,FAM13B,FBXL21,H2AFY,HNRNPA0,IL9,KLHL3,LECT2,MYOT,NEUROG1,PITX1,PKD2L2,SLC25A48,SMAD5,SPOCK1,TGFBI,TIFAB,TRPC7"
TCGA.AA.A00N.01A	5	134346032	134688586	10	-0.4059	NEUTRAL	NA	4	"C5orf66,CATSPER3,H2AFY,PITX1"
TCGA.AZ.4684.01A	5	134347159	137292102	130	-0.04	NEUTRAL	NA	21	"C5orf66,CATSPER3,CXCL14,DCANP1,FAM13B,FBXL21,H2AFY,HNRNPA0,IL9,KLHL3,LECT2,MYOT,NEUROG1,PITX1,PKD2L2,SLC25A48,SMAD5,SPOCK1,TGFBI,TIFAB,TRPC7"
TCGA.AG.4009.01A	5	134670649	135231079	22	-0.0485	NEUTRAL	NA	8	"C5orf66,CXCL14,DCANP1,H2AFY,IL9,NEUROG1,SLC25A48,TIFAB"
TCGA.A6.3808.01A	5	134678953	137206361	95	0.3466	NEUTRAL	NA	17	"C5orf66,CXCL14,DCANP1,FBXL21,H2AFY,HNRNPA0,IL9,KLHL3,LECT2,MYOT,NEUROG1,SLC25A48,SMAD5,SPOCK1,TGFBI,TIFAB,TRPC7"
TCGA.A6.3810.01A	5	134681601	168006184	2125	0.1737	NEUTRAL	NA	265	Too-Many
TCGA.AA.A00N.01A	5	134696150	135567005	56	0.0851	NEUTRAL	NA	12	"CXCL14,DCANP1,FBXL21,H2AFY,IL9,LECT2,NEUROG1,SLC25A48,SMAD5,TGFBI,TIFAB,TRPC7"
TCGA.AA.A01Q.01A	5	134696150	137765473	187	0.192	NEUTRAL	NA	27	"BRD8,CDC23,CDC25C,CXCL14,DCANP1,FAM13B,FAM53C,FBXL21,GFRA3,H2AFY,HNRNPA0,IL9,KDM3B,KIF20A,KLHL3,LECT2,MYOT,NEUROG1,NME5,PKD2L2,SLC25A48,SMAD5,SPOCK1,TGFBI,TIFAB,TRPC7,WNT8A"
TCGA.AA.A01T	5	134917281	180692832	15487	0.0534	NEUTRAL	NA	384	Too-Many
TCGA.AM.5820	5	135228387	149413440	4367	0.0254	NEUTRAL	NA	173	Too-Many
TCGA.AA.3982	5	135267336	137340296	722	-0.0275	NEUTRAL	NA	11	"FAM13B,FBXL21,HNRNPA0,KLHL3,LECT2,MYOT,PKD2L2,SMAD5,SPOCK1,TGFBI,TRPC7"
TCGA.AA.3941	5	135283221	135651939	145	0.221	NEUTRAL	NA	4	"LECT2,SMAD5,TGFBI,TRPC7"
TCGA.AG.4009.01A	5	135286863	135416131	19	0.013	NEUTRAL	NA	2	"LECT2,TGFBI"
TCGA.CK.5914.01A	5	135286863	137206361	65	0.3501	NEUTRAL	NA	8	"HNRNPA0,KLHL3,LECT2,MYOT,SMAD5,SPOCK1,TGFBI,TRPC7"
TCGA.AA.3844	5	135461955	137333388	610	0.3179	NEUTRAL	NA	8	"FAM13B,HNRNPA0,KLHL3,MYOT,PKD2L2,SMAD5,SPOCK1,TRPC7"
TCGA.AG.4009.01A	5	135489421	135512979	6	-0.3995	NEUTRAL	NA	1	SMAD5
TCGA.QG.A5YX	5	135505840	180692832	15105	-0.0773	NEUTRAL	NA	379	Too-Many
TCGA.AG.4009.01A	5	135549073	137665200	159	0.0254	NEUTRAL	NA	14	"BRD8,CDC23,CDC25C,FAM13B,GFRA3,HNRNPA0,KIF20A,KLHL3,MYOT,NME5,PKD2L2,SPOCK1,TRPC7,WNT8A"
TCGA.AG.A00C.01A	5	135583151	137056105	29	-0.4245	NEUTRAL	NA	3	"KLHL3,SPOCK1,TRPC7"
TCGA.AA.3850	5	135643942	136604249	356	-0.20845	NEUTRAL	NA	2	"SPOCK1,TRPC7"
TCGA.AA.3941	5	135652221	136604249	351	-0.1762	NEUTRAL	NA	2	"SPOCK1,TRPC7"
TCGA.AA.A00D.01A	5	135692269	140075052	381	-0.3886	NEUTRAL	NA	56	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,BRD8,CD14,CDC23,CDC25C,CTNNA1,CXXC5,CYSTM1,DNAJC18,DND1,ECSCR,EGR1,EIF4EBP3,ETF1,FAM13B,FAM53C,GFRA3,HARS,HARS2,HBEGF,HNRNPA0,HSPA9,IGIP,IK,KDM3B,KIF20A,KLHL3,LRRTM2,MATR3,MYOT,MZB1,NDUFA2,NME5,NRG2,PAIP2,PFDN1,PKD2L2,PROB1,PSD2,PURA,REEP2,SIL1,SLC23A1,SLC35A4,SLC4A9,SPATA24,SPOCK1,SRA1,TMCO6,TMEM173,TRPC7,UBE2D2,WDR55,WNT8A"
TCGA.AZ.4681	5	136172768	180692832	15017	-0.0117	NEUTRAL	NA	377	Too-Many
TCGA.AA.A00Q.01A	5	136314314	139908941	337	-0.468	NEUTRAL	NA	43	"ANKHD1,ANKHD1-EIF4EBP3,BRD8,CDC23,CDC25C,CTNNA1,CXXC5,CYSTM1,DNAJC18,ECSCR,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HBEGF,HNRNPA0,HSPA9,IGIP,KDM3B,KIF20A,KLHL3,LRRTM2,MATR3,MYOT,MZB1,NME5,NRG2,PAIP2,PFDN1,PKD2L2,PROB1,PSD2,PURA,REEP2,SIL1,SLC23A1,SLC4A9,SPATA24,SPOCK1,TMEM173,UBE2D2,WNT8A"
TCGA.DM.A1HA	5	136551735	180692832	14866	0.0223	NEUTRAL	NA	377	Too-Many
TCGA.AA.3941	5	136604872	137340296	216	0.1425	NEUTRAL	NA	6	"FAM13B,HNRNPA0,KLHL3,MYOT,PKD2L2,SPOCK1"
TCGA.AA.3850	5	136604872	140629277	711	0.27415	NEUTRAL	NA	87	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,BRD8,CD14,CDC23,CDC25C,CTNNA1,CXXC5,CYSTM1,DNAJC18,DND1,ECSCR,EGR1,EIF4EBP3,ETF1,FAM13B,FAM53C,GFRA3,HARS,HARS2,HBEGF,HNRNPA0,HSPA9,IGIP,IK,KDM3B,KIF20A,KLHL3,LRRTM2,MATR3,MYOT,MZB1,NDUFA2,NME5,NRG2,PAIP2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PFDN1,PKD2L2,PROB1,PSD2,PURA,REEP2,SIL1,SLC23A1,SLC35A4,SLC4A9,SPATA24,SPOCK1,SRA1,TMCO6,TMEM173,UBE2D2,WDR55,WNT8A,ZMAT2"
TCGA.D5.6535	5	136802546	180692832	14733	-0.0111	NEUTRAL	NA	377	Too-Many
TCGA.F4.6808	5	136820574	143497130	1704	0.0143	NEUTRAL	NA	127	Too-Many
TCGA.EI.6513	5	136828321	180692832	14727	-0.0136	NEUTRAL	NA	377	Too-Many
TCGA.D5.6923	5	136895130	137671025	129	-0.508	NEUTRAL	NA	12	"BRD8,CDC23,CDC25C,FAM13B,GFRA3,HNRNPA0,KIF20A,KLHL3,MYOT,NME5,PKD2L2,WNT8A"
TCGA.AG.3909.01A	5	136993769	137211518	11	0.19	NEUTRAL	NA	3	"HNRNPA0,KLHL3,MYOT"
TCGA.AG.A00C.01A	5	137071232	137211518	4	-0.1243	NEUTRAL	NA	3	"HNRNPA0,KLHL3,MYOT"
TCGA.DM.A28K	5	137179923	180692832	14602	-0.0014	NEUTRAL	NA	374	Too-Many
TCGA.AA.3967.01A	5	137211518	138147821	185	0.0285	NEUTRAL	NA	17	"BRD8,CDC23,CDC25C,CTNNA1,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,MYOT,NME5,PKD2L2,REEP2,WNT8A"
TCGA.A6.3808.01A	5	137211518	140165824	457	-0.4335	NEUTRAL	NA	54	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,BRD8,CD14,CDC23,CDC25C,CTNNA1,CXXC5,CYSTM1,DNAJC18,DND1,ECSCR,EGR1,EIF4EBP3,ETF1,FAM13B,FAM53C,GFRA3,HARS,HARS2,HBEGF,HSPA9,IGIP,IK,KDM3B,KIF20A,LRRTM2,MATR3,MYOT,MZB1,NDUFA2,NME5,NRG2,PAIP2,PCDHA1,PFDN1,PKD2L2,PROB1,PSD2,PURA,REEP2,SIL1,SLC23A1,SLC35A4,SLC4A9,SPATA24,SRA1,TMCO6,TMEM173,UBE2D2,WDR55,WNT8A,ZMAT2"
TCGA.AG.A00C.01A	5	137213162	137257277	15	0.2709	NEUTRAL	NA	2	"MYOT,PKD2L2"
TCGA.AG.A01L.01A	5	137217655	137230100	8	-0.4691	NEUTRAL	NA	2	"MYOT,PKD2L2"
TCGA.AG.A01L.01A	5	137235163	137492855	48	0.2175	NEUTRAL	NA	5	"BRD8,FAM13B,NME5,PKD2L2,WNT8A"
TCGA.CK.5914.01A	5	137241848	137454456	36	-0.0353	NEUTRAL	NA	4	"FAM13B,NME5,PKD2L2,WNT8A"
TCGA.AA.A01K.01A	5	137241848	137507687	66	-0.0026	NEUTRAL	NA	5	"BRD8,FAM13B,NME5,PKD2L2,WNT8A"
TCGA.AG.A00C.01A	5	137259058	137323882	20	-0.1726	NEUTRAL	NA	2	"FAM13B,PKD2L2"
TCGA.AZ.4684.01A	5	137320909	139494856	264	-0.235	NEUTRAL	NA	31	"BRD8,CDC23,CDC25C,CTNNA1,CXXC5,DNAJC18,ECSCR,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,LRRTM2,MATR3,MZB1,NME5,NRG2,PAIP2,PROB1,PSD2,PURA,REEP2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2,WNT8A"
TCGA.AA.3982	5	137341909	139378985	299	0.3115	NEUTRAL	NA	30	"BRD8,CDC23,CDC25C,CTNNA1,CXXC5,DNAJC18,ECSCR,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,LRRTM2,MATR3,MZB1,NME5,NRG2,PAIP2,PROB1,PSD2,REEP2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2,WNT8A"
TCGA.AA.A00N.01A	5	137342632	137485277	20	0.0174	NEUTRAL	NA	4	"BRD8,FAM13B,NME5,WNT8A"
TCGA.AG.A00C.01A	5	137342632	138147821	147	0.1176	NEUTRAL	NA	15	"BRD8,CDC23,CDC25C,CTNNA1,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,NME5,REEP2,WNT8A"
TCGA.AG.3909.01A	5	137346675	137454456	11	0.0627	NEUTRAL	NA	3	"FAM13B,NME5,WNT8A"
TCGA.DM.A28M.01A	5	137346675	139494856	261	0.1617	NEUTRAL	NA	31	"BRD8,CDC23,CDC25C,CTNNA1,CXXC5,DNAJC18,ECSCR,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,LRRTM2,MATR3,MZB1,NME5,NRG2,PAIP2,PROB1,PSD2,PURA,REEP2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2,WNT8A"
TCGA.AA.3509.01A	5	137346675	139495549	261	-0.146	NEUTRAL	NA	31	"BRD8,CDC23,CDC25C,CTNNA1,CXXC5,DNAJC18,ECSCR,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,LRRTM2,MATR3,MZB1,NME5,NRG2,PAIP2,PROB1,PSD2,PURA,REEP2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2,WNT8A"
TCGA.AG.3909.01A	5	137481424	137488124	4	-0.0834	NEUTRAL	NA	1	BRD8
TCGA.CK.5914.01A	5	137488124	137537743	44	0.3371	NEUTRAL	NA	3	"BRD8,CDC23,KIF20A"
TCGA.AG.A01L.01A	5	137495170	137513216	20	-0.1191	NEUTRAL	NA	1	BRD8
TCGA.AA.A01K.01A	5	137517069	139892901	248	0.097	NEUTRAL	NA	34	"ANKHD1,ANKHD1-EIF4EBP3,CDC23,CDC25C,CTNNA1,CXXC5,CYSTM1,DNAJC18,ECSCR,EGR1,ETF1,FAM53C,GFRA3,HBEGF,HSPA9,IGIP,KDM3B,KIF20A,LRRTM2,MATR3,MZB1,NRG2,PAIP2,PFDN1,PROB1,PSD2,PURA,REEP2,SIL1,SLC23A1,SLC4A9,SPATA24,TMEM173,UBE2D2"
TCGA.AG.A01L.01A	5	137527488	162945152	1742	0.1259	NEUTRAL	NA	239	Too-Many
TCGA.AG.A01W.01A	5	137543219	137549856	10	-0.0393	NEUTRAL	NA	1	CDC23
TCGA.AA.3861.01A	5	137595206	141033479	559	0.2203	NEUTRAL	NA	105	Too-Many
TCGA.AG.3909.01A	5	137621340	137661510	8	-0.0545	NEUTRAL	NA	1	CDC25C
TCGA.D5.6923	5	137684731	180692832	14545	-0.1081	NEUTRAL	NA	364	Too-Many
TCGA.AG.A01W.01A	5	137704872	137710244	4	0.3358	NEUTRAL	NA	1	KDM3B
TCGA.AA.A00N.01A	5	137708315	137713372	3	0.0282	NEUTRAL	NA	1	KDM3B
TCGA.AG.3909.01A	5	137708315	137717146	5	0.1408	NEUTRAL	NA	1	KDM3B
TCGA.CK.5914.01A	5	137708315	137762623	17	0.1285	NEUTRAL	NA	1	KDM3B
TCGA.AG.4009.01A	5	137708315	137771249	22	-0.0921	NEUTRAL	NA	1	KDM3B
TCGA.AA.A00N.01A	5	137750769	137756418	4	-0.214	NEUTRAL	NA	1	KDM3B
TCGA.AA.A00F.01A	5	137750769	137854344	28	-0.1494	NEUTRAL	NA	4	"EGR1,ETF1,KDM3B,REEP2"
TCGA.AG.3909.01A	5	137761061	137878476	25	0.0234	NEUTRAL	NA	4	"EGR1,ETF1,KDM3B,REEP2"
TCGA.CK.5914.01A	5	137763619	137897221	30	-0.2529	NEUTRAL	NA	5	"EGR1,ETF1,HSPA9,KDM3B,REEP2"
TCGA.AA.A01Q.01A	5	137765886	138282759	56	-0.1976	NEUTRAL	NA	8	"CTNNA1,EGR1,ETF1,HSPA9,KDM3B,LRRTM2,REEP2,SIL1"
TCGA.AG.A01W.01A	5	137799147	137830304	8	-0.2028	NEUTRAL	NA	1	EGR1
TCGA.AG.4009.01A	5	137843949	137909685	24	-0.0129	NEUTRAL	NA	2	"ETF1,HSPA9"
TCGA.AA.A010.01A	5	137848411	138773012	93	0.1064	NEUTRAL	NA	12	"CTNNA1,DNAJC18,ETF1,HSPA9,LRRTM2,MATR3,MZB1,PAIP2,PROB1,SIL1,SLC23A1,SPATA24"
TCGA.AG.3906.01A	5	137853201	138979937	87	0.0224	NEUTRAL	NA	15	"CTNNA1,DNAJC18,ECSCR,ETF1,HSPA9,LRRTM2,MATR3,MZB1,PAIP2,PROB1,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2"
TCGA.AA.A00F.01A	5	137878476	137895514	8	0.3668	NEUTRAL	NA	2	"ETF1,HSPA9"
TCGA.AA.A00F.01A	5	137897221	137906597	6	0.0322	NEUTRAL	NA	1	HSPA9
TCGA.AA.A01F.01A	5	137902261	138713038	53	0.1368	NEUTRAL	NA	7	"CTNNA1,HSPA9,LRRTM2,MATR3,PAIP2,SIL1,SLC23A1"
TCGA.AG.A01W.01A	5	137906376	137925150	9	0.2157	NEUTRAL	NA	1	HSPA9
TCGA.AA.A00F.01A	5	137909397	138147821	6	0.3464	NEUTRAL	NA	2	"CTNNA1,HSPA9"
TCGA.AA.3967.01A	5	138160237	138356809	18	-0.461	NEUTRAL	NA	3	"CTNNA1,LRRTM2,SIL1"
TCGA.AG.A00C.01A	5	138160237	138362449	19	-0.2972	NEUTRAL	NA	3	"CTNNA1,LRRTM2,SIL1"
TCGA.AG.3909.01A	5	138160237	138773012	61	-0.1257	NEUTRAL	NA	10	"CTNNA1,DNAJC18,LRRTM2,MATR3,MZB1,PAIP2,PROB1,SIL1,SLC23A1,SPATA24"
TCGA.CK.5914.01A	5	138160237	138775026	69	-0.2378	NEUTRAL	NA	10	"CTNNA1,DNAJC18,LRRTM2,MATR3,MZB1,PAIP2,PROB1,SIL1,SLC23A1,SPATA24"
TCGA.AA.A00F.01A	5	138160237	141974804	399	-0.059	NEUTRAL	NA	105	Too-Many
TCGA.AG.A01W.01A	5	138173580	138390349	22	-0.1304	NEUTRAL	NA	3	"CTNNA1,LRRTM2,SIL1"
TCGA.AG.4009.01A	5	138208689	139202240	75	-0.0315	NEUTRAL	NA	15	"CTNNA1,CXXC5,DNAJC18,ECSCR,LRRTM2,MATR3,MZB1,PAIP2,PROB1,PSD2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2"
TCGA.AA.A01Q.01A	5	138286813	139006277	53	0.1845	NEUTRAL	NA	11	"DNAJC18,ECSCR,MATR3,MZB1,PAIP2,PROB1,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2"
TCGA.AA.3967.01A	5	138362449	139201426	61	0.0474	NEUTRAL	NA	13	"CXXC5,DNAJC18,ECSCR,MATR3,MZB1,PAIP2,PROB1,PSD2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2"
TCGA.AA.A00N.01A	5	138378272	138739584	41	-0.4935	NEUTRAL	NA	7	"MATR3,MZB1,PAIP2,PROB1,SIL1,SLC23A1,SPATA24"
TCGA.AG.A00C.01A	5	138378272	139828767	113	0.0935	NEUTRAL	NA	22	"ANKHD1,ANKHD1-EIF4EBP3,CXXC5,CYSTM1,DNAJC18,ECSCR,HBEGF,IGIP,MATR3,MZB1,NRG2,PAIP2,PFDN1,PROB1,PSD2,PURA,SIL1,SLC23A1,SLC4A9,SPATA24,TMEM173,UBE2D2"
TCGA.AA.A01F.01A	5	138713614	138718134	7	-0.3042	NEUTRAL	NA	1	SLC23A1
TCGA.AA.A01F.01A	5	138718824	180686963	2147	0.1131	NEUTRAL	NA	353	Too-Many
TCGA.AG.3891.01A	5	138723402	140085169	193	0.0791	NEUTRAL	NA	31	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,CXXC5,CYSTM1,DNAJC18,DND1,ECSCR,EIF4EBP3,HARS,HARS2,HBEGF,IGIP,IK,MZB1,NDUFA2,NRG2,PFDN1,PROB1,PSD2,PURA,SLC35A4,SLC4A9,SPATA24,SRA1,TMCO6,TMEM173,UBE2D2,WDR55,ZMAT2"
TCGA.A6.2681	5	138949361	180692832	14394	0.1149	NEUTRAL	NA	346	Too-Many
TCGA.AA.A00N.01A	5	138979937	139493997	33	-0.2379	NEUTRAL	NA	5	"CXXC5,NRG2,PSD2,PURA,UBE2D2"
TCGA.CK.5914.01A	5	138979937	139493997	32	-0.0699	NEUTRAL	NA	5	"CXXC5,NRG2,PSD2,PURA,UBE2D2"
TCGA.G4.6317	5	139143509	180692832	14374	0.0015	NEUTRAL	NA	344	Too-Many
TCGA.AA.3967.01A	5	139202240	139907768	82	-0.4133	NEUTRAL	NA	10	"ANKHD1,ANKHD1-EIF4EBP3,CYSTM1,HBEGF,IGIP,NRG2,PFDN1,PSD2,PURA,SLC4A9"
TCGA.AA.A01C.01A	5	139202240	178987009	2291	0.0129	NEUTRAL	NA	315	Too-Many
TCGA.AG.4009.01A	5	139213251	139844225	58	-0.4376	NEUTRAL	NA	10	"ANKHD1,ANKHD1-EIF4EBP3,CYSTM1,HBEGF,IGIP,NRG2,PFDN1,PSD2,PURA,SLC4A9"
TCGA.AA.A010.01A	5	139251266	139421957	4	-0.2783	NEUTRAL	NA	1	NRG2
TCGA.AA.A01Q.01A	5	139251266	139493997	5	0.239	NEUTRAL	NA	2	"NRG2,PURA"
TCGA.AA.3844	5	139323256	139464361	44	0.3544	NEUTRAL	NA	1	NRG2
TCGA.AA.3982	5	139379706	139519180	36	-0.0787	NEUTRAL	NA	3	"IGIP,NRG2,PURA"
TCGA.AA.3941	5	139384601	139436348	24	-0.101	NEUTRAL	NA	1	NRG2
TCGA.AG.A01W.01A	5	139402109	139605697	6	0.1667	NEUTRAL	NA	4	"CYSTM1,IGIP,NRG2,PURA"
TCGA.AG.3909.01A	5	139421957	139507940	8	-0.4886	NEUTRAL	NA	3	"IGIP,NRG2,PURA"
TCGA.AA.3509.01A	5	139504910	147582587	681	0.0746	NEUTRAL	NA	112	Too-Many
TCGA.AZ.4684.01A	5	139505329	140220860	171	-0.0952	NEUTRAL	NA	27	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,CYSTM1,DND1,EIF4EBP3,HARS,HARS2,HBEGF,IGIP,IK,NDUFA2,PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PFDN1,SLC35A4,SLC4A9,SRA1,TMCO6,WDR55,ZMAT2"
TCGA.AG.3906.01A	5	139505560	139851775	40	0.0873	NEUTRAL	NA	7	"ANKHD1,ANKHD1-EIF4EBP3,CYSTM1,HBEGF,IGIP,PFDN1,SLC4A9"
TCGA.DM.A28M.01A	5	139505560	175533478	2057	0.2169	NEUTRAL	NA	258	Too-Many
TCGA.AG.A023.01A	5	139507940	141007395	325	-0.2227	NEUTRAL	NA	77	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,CYSTM1,DIAPH1,DND1,EIF4EBP3,HARS,HARS2,HBEGF,HDAC3,IGIP,IK,NDUFA2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,PFDN1,SLC25A2,SLC35A4,SLC4A9,SRA1,TAF7,TMCO6,WDR55,ZMAT2"
TCGA.AA.3982	5	139522327	140124785	85	0.3302	NEUTRAL	NA	19	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,CYSTM1,DND1,EIF4EBP3,HARS,HARS2,HBEGF,IK,NDUFA2,PFDN1,SLC35A4,SLC4A9,SRA1,TMCO6,WDR55,ZMAT2"
TCGA.AA.A010.01A	5	139574004	139781526	30	0.1476	NEUTRAL	NA	6	"ANKHD1,ANKHD1-EIF4EBP3,CYSTM1,HBEGF,PFDN1,SLC4A9"
TCGA.AA.A00N.01A	5	139574004	139828767	36	0.0386	NEUTRAL	NA	6	"ANKHD1,ANKHD1-EIF4EBP3,CYSTM1,HBEGF,PFDN1,SLC4A9"
TCGA.AG.3909.01A	5	139574004	139916876	59	0.2002	NEUTRAL	NA	6	"ANKHD1,ANKHD1-EIF4EBP3,CYSTM1,HBEGF,PFDN1,SLC4A9"
TCGA.AA.A01Q.01A	5	139574004	140044448	76	0.2978	NEUTRAL	NA	15	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,CYSTM1,EIF4EBP3,HBEGF,IK,NDUFA2,PFDN1,SLC35A4,SLC4A9,SRA1,TMCO6,WDR55"
TCGA.AG.A01W.01A	5	139641160	139831960	36	-0.316	NEUTRAL	NA	5	"ANKHD1,ANKHD1-EIF4EBP3,HBEGF,PFDN1,SLC4A9"
TCGA.CK.5914.01A	5	139714200	139825310	29	-0.2511	NEUTRAL	NA	4	"ANKHD1,ANKHD1-EIF4EBP3,HBEGF,SLC4A9"
TCGA.CK.5914.01A	5	139828767	139889576	18	0.3089	NEUTRAL	NA	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AG.A00C.01A	5	139838188	139908941	25	-0.2838	NEUTRAL	NA	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AA.A010.01A	5	139838188	139921705	30	0.1985	NEUTRAL	NA	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AG.4009.01A	5	139851775	139916876	24	-0.1626	NEUTRAL	NA	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AG.A01W.01A	5	139856319	139899081	20	-0.2725	NEUTRAL	NA	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AG.3906.01A	5	139862142	139889576	13	-0.2928	NEUTRAL	NA	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.CK.5914.01A	5	139892364	140021209	33	-0.3679	NEUTRAL	NA	8	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,EIF4EBP3,SLC35A4,SRA1,TMCO6"
TCGA.AG.3906.01A	5	139892364	140027999	42	-0.0109	NEUTRAL	NA	10	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,EIF4EBP3,IK,NDUFA2,SLC35A4,SRA1,TMCO6"
TCGA.AA.A00N.01A	5	139903629	140021209	31	-0.3571	NEUTRAL	NA	8	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,EIF4EBP3,SLC35A4,SRA1,TMCO6"
TCGA.AA.3967.01A	5	139908941	140079983	77	-0.027	NEUTRAL	NA	14	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,DND1,EIF4EBP3,HARS,HARS2,IK,NDUFA2,SLC35A4,SRA1,TMCO6,WDR55"
TCGA.AG.A00C.01A	5	139914900	140801323	227	0.3134	NEUTRAL	NA	66	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,DND1,EIF4EBP3,HARS,HARS2,IK,NDUFA2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,SLC25A2,SLC35A4,SRA1,TAF7,TMCO6,WDR55,ZMAT2"
TCGA.AG.4009.01A	5	139917634	140021209	22	0.305	NEUTRAL	NA	8	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,EIF4EBP3,SLC35A4,SRA1,TMCO6"
TCGA.AG.A01W.01A	5	139920733	140007600	17	-0.4314	NEUTRAL	NA	5	"ANKHD1-EIF4EBP3,APBB3,EIF4EBP3,SLC35A4,SRA1"
TCGA.AG.3909.01A	5	139943709	140019065	5	0.1525	NEUTRAL	NA	4	"APBB3,CD14,SLC35A4,TMCO6"
TCGA.AA.A010.01A	5	140021209	140026804	9	0.3296	NEUTRAL	NA	2	"NDUFA2,TMCO6"
TCGA.AA.A00Q.01A	5	140021209	140719667	144	-0.4649	NEUTRAL	NA	43	"DND1,HARS,HARS2,IK,NDUFA2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA2,SLC25A2,TAF7,TMCO6,WDR55,ZMAT2"
TCGA.AG.4009.01A	5	140021853	140044448	26	-0.1496	NEUTRAL	NA	4	"IK,NDUFA2,TMCO6,WDR55"
TCGA.AG.A01W.01A	5	140027955	140037376	10	0.0125	NEUTRAL	NA	1	IK
TCGA.AG.3906.01A	5	140031249	140085169	47	0.3112	NEUTRAL	NA	6	"DND1,HARS,HARS2,IK,WDR55,ZMAT2"
TCGA.AA.A01Q.01A	5	140047781	140062638	14	-0.3515	NEUTRAL	NA	3	"DND1,HARS,WDR55"
TCGA.AG.A01W.01A	5	140053297	140065371	15	-0.4388	NEUTRAL	NA	1	HARS
TCGA.AF.3914.01A	5	140056931	140783078	164	0.213	NEUTRAL	NA	50	"HARS,HARS2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,SLC25A2,TAF7,ZMAT2"
TCGA.AA.A00L.01A	5	140057191	140085169	22	-0.1352	NEUTRAL	NA	3	"HARS,HARS2,ZMAT2"
TCGA.AA.A00N.01A	5	140070394	140085169	18	-0.1015	NEUTRAL	NA	3	"HARS,HARS2,ZMAT2"
TCGA.AG.4009.01A	5	140070394	140167584	20	-0.0218	NEUTRAL	NA	4	"HARS,HARS2,PCDHA1,ZMAT2"
TCGA.AA.A01Q.01A	5	140070394	140517020	82	0.1899	NEUTRAL	NA	23	"HARS,HARS2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB2,PCDHB3,PCDHB4,PCDHB5,ZMAT2"
TCGA.AA.A010.01A	5	140070768	140998315	206	0.3022	NEUTRAL	NA	59	"DIAPH1,HARS,HARS2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,SLC25A2,TAF7,ZMAT2"
TCGA.AA.A00D.01A	5	140075640	141045953	172	-0.0264	NEUTRAL	NA	62	"ARAP3,DIAPH1,FCHSD1,HARS2,HDAC3,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,SLC25A2,TAF7,ZMAT2"
TCGA.AG.A01J.01A	5	140076074	180686963	2298	-0.0752	NEUTRAL	NA	323	Too-Many
TCGA.AA.3941	5	140081422	140688727	103	0.0201	NEUTRAL	NA	33	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,SLC25A2,ZMAT2"
TCGA.AA.3980.01A	5	140083453	140868777	162	-0.4429	NEUTRAL	NA	55	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,SLC25A2,TAF7,ZMAT2"
TCGA.AA.3844	5	140119372	140688727	97	0.3068	NEUTRAL	NA	32	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,SLC25A2"
TCGA.AA.3982	5	140133064	140369317	31	0.0924	NEUTRAL	NA	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2"
TCGA.AA.3939.01A	5	140187124	140306470	36	-0.4235	NEUTRAL	NA	14	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1"
TCGA.AG.A01W.01A	5	140208617	140215778	4	-0.1714	NEUTRAL	NA	7	"PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7"
TCGA.AG.3891.01A	5	140220860	140801323	125	-0.4981	NEUTRAL	NA	51	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,SLC25A2,TAF7"
TCGA.AZ.4684.01A	5	140248639	140956323	145	-0.1697	NEUTRAL	NA	56	"DIAPH1,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,SLC25A2,TAF7"
TCGA.AA.A02H.01A	5	140248639	176332934	1822	-0.3245	NEUTRAL	NA	254	Too-Many
TCGA.CM.4744.01A	5	140248639	177151070	2152	-0.0322	NEUTRAL	NA	275	Too-Many
TCGA.AG.A01N.01A	5	140250347	141059075	191	-0.2651	NEUTRAL	NA	60	"ARAP3,DIAPH1,FCHSD1,HDAC3,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,SLC25A2,TAF7"
TCGA.AA.A00Z.01A	5	140255411	175956251	40	-0.3893	NEUTRAL	NA	246	Too-Many
TCGA.AA.3939.01A	5	140307998	140734719	76	-0.0401	NEUTRAL	NA	38	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGB1,SLC25A2,TAF7"
TCGA.AA.3967.01A	5	140307998	140913855	119	-0.2668	NEUTRAL	NA	56	"DIAPH1,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,SLC25A2,TAF7"
TCGA.AG.A01W.01A	5	140338652	140412584	8	-0.3263	NEUTRAL	NA	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2"
TCGA.AG.3605.01A	5	140346361	154393381	30	0.0473	NEUTRAL	NA	155	Too-Many
TCGA.AG.3909.01A	5	140358467	140431004	5	0.2997	NEUTRAL	NA	16	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1"
TCGA.AA.3930.01A	5	140358467	140874317	108	-0.2328	NEUTRAL	NA	55	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,SLC25A2,TAF7"
TCGA.AA.A00L.01A	5	140362013	140890472	94	-0.3573	NEUTRAL	NA	55	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,SLC25A2,TAF7"
TCGA.AA.3982	5	140372221	140688727	58	-0.0544	NEUTRAL	NA	32	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,SLC25A2"
TCGA.AG.4009.01A	5	140389183	140810287	99	-0.2158	NEUTRAL	NA	52	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,SLC25A2,TAF7"
TCGA.AA.A01Q.01A	5	140517250	140625880	31	-0.3137	NEUTRAL	NA	12	"PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9"
TCGA.F5.6811.01A	5	140554573	177666405	2158	0.2698	NEUTRAL	NA	261	Too-Many
TCGA.CM.6165.01A	5	140559605	180686963	2486	0.0267	NEUTRAL	NA	299	Too-Many
TCGA.AG.A01W.01A	5	140583235	140678739	9	-0.2043	NEUTRAL	NA	4	"PCDHB12,PCDHB13,PCDHB14,PCDHB15"
TCGA.AA.A01Q.01A	5	140626635	140954482	53	0.07	NEUTRAL	NA	26	"DIAPH1,PCDHB15,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,SLC25A2,TAF7"
TCGA.AA.3850	5	140638584	142725083	796	0.29985	NEUTRAL	NA	39	"ARAP3,ARHGAP26,DIAPH1,FCHSD1,FGF1,GNPDA1,HDAC3,KIAA0141,NDFIP1,NR3C1,PCDH1,PCDH12,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,RNF14,SLC25A2,SPRY4,TAF7"
TCGA.AG.A01W.01A	5	140690387	140700871	7	0.2854	NEUTRAL	NA	1	TAF7
TCGA.AA.3982	5	140691909	142655014	772	0.2077	NEUTRAL	NA	37	"ARAP3,ARHGAP26,DIAPH1,FCHSD1,FGF1,GNPDA1,HDAC3,KIAA0141,NDFIP1,PCDH1,PCDH12,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,RNF14,SPRY4,TAF7"
TCGA.AA.3941	5	140691909	142725083	781	0.3179	NEUTRAL	NA	38	"ARAP3,ARHGAP26,DIAPH1,FCHSD1,FGF1,GNPDA1,HDAC3,KIAA0141,NDFIP1,NR3C1,PCDH1,PCDH12,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,RNF14,SPRY4,TAF7"
TCGA.AG.A01W.01A	5	140703764	140724032	13	-0.196	NEUTRAL	NA	3	"PCDHGA1,PCDHGA2,PCDHGA3"
TCGA.AA.A00Q.01A	5	140720317	140797400	23	0.0727	NEUTRAL	NA	17	"PCDHGA1,PCDHGA10,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7"
TCGA.AA.3939.01A	5	140735641	140800899	24	-0.3518	NEUTRAL	NA	18	"PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7"
TCGA.AG.A01W.01A	5	140742605	140763478	12	-0.0847	NEUTRAL	NA	10	"PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGB1,PCDHGB2,PCDHGB3"
TCGA.F5.6464	5	140753244	180692832	14099	0.1207	NEUTRAL	NA	288	Too-Many
TCGA.AF.3914.01A	5	140787720	140966559	42	-0.0825	NEUTRAL	NA	23	"DIAPH1,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AA.A02K.01A	5	140787745	145719105	259	0.3752	NEUTRAL	NA	47	"ARAP3,ARHGAP26,DIAPH1,FCHSD1,FGF1,GNPDA1,GRXCR2,HDAC3,HMHB1,KCTD16,KIAA0141,LARS,NDFIP1,NR3C1,PCDH1,PCDH12,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,PLAC8L1,POU4F3,PRELID2,RBM27,RELL2,RNF14,SH3RF2,SPRY4,YIPF5"
TCGA.AA.A01D.01A	5	140797400	180686963	2055	-0.3148	NEUTRAL	NA	288	Too-Many
TCGA.AA.3939.01A	5	140801323	167489053	1345	0.0998	NEUTRAL	NA	161	Too-Many
TCGA.AG.A00C.01A	5	140803155	140950932	20	-0.0185	NEUTRAL	NA	23	"DIAPH1,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AG.3891.01A	5	140803155	141364320	110	-0.077	NEUTRAL	NA	31	"ARAP3,DIAPH1,FCHSD1,HDAC3,KIAA0141,PCDH1,PCDH12,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,RNF14"
TCGA.AG.A00Y.01A	5	140803155	180686963	2202	0.0423	NEUTRAL	NA	288	Too-Many
TCGA.AG.A014.01A	5	140803155	180686963	2179	-0.1185	NEUTRAL	NA	288	Too-Many
TCGA.A6.6140	5	140807342	140993622	27	-0.0287	NEUTRAL	NA	23	"DIAPH1,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AA.A00N.01A	5	140810287	140915528	20	-0.3721	NEUTRAL	NA	23	"DIAPH1,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AG.A01W.01A	5	140835842	140844899	5	-0.2709	NEUTRAL	NA	19	"PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7"
TCGA.CM.6163	5	140855328	151578135	3946	0.1419	NEUTRAL	NA	109	Too-Many
TCGA.AA.A02E.01A	5	140855736	177576687	1863	-0.186	NEUTRAL	NA	246	Too-Many
TCGA.CK.5914.01A	5	140874317	140998315	31	-0.0358	NEUTRAL	NA	23	"DIAPH1,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AA.3980.01A	5	140874317	156929761	1112	-0.1301	NEUTRAL	NA	133	Too-Many
TCGA.AG.4009.01A	5	140884938	140967727	27	0.0196	NEUTRAL	NA	23	"DIAPH1,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AG.3906.01A	5	140884938	141364320	99	0.0719	NEUTRAL	NA	31	"ARAP3,DIAPH1,FCHSD1,HDAC3,KIAA0141,PCDH1,PCDH12,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,RNF14"
TCGA.AA.3930.01A	5	140884938	176084467	1829	0.0807	NEUTRAL	NA	218	Too-Many
TCGA.AG.3909.01A	5	140896389	140908690	6	-0.0164	NEUTRAL	NA	1	DIAPH1
TCGA.AG.3611.01A	5	140905578	140953055	4	0.0764	NEUTRAL	NA	1	DIAPH1
TCGA.AA.A00L.01A	5	140905578	140963003	9	0.2197	NEUTRAL	NA	1	DIAPH1
TCGA.AG.3909.01A	5	140909121	140967727	19	0.363	NEUTRAL	NA	1	DIAPH1
TCGA.AG.A01W.01A	5	140931626	140981168	17	0.0474	NEUTRAL	NA	1	DIAPH1
TCGA.AG.A00C.01A	5	140951441	140967727	16	-0.3488	NEUTRAL	NA	1	DIAPH1
TCGA.AG.3611.01A	5	140954482	145175968	122	-0.3947	NEUTRAL	NA	19	"ARAP3,ARHGAP26,DIAPH1,FCHSD1,FGF1,GNPDA1,HDAC3,HMHB1,KCTD16,KIAA0141,NDFIP1,NR3C1,PCDH1,PCDH12,PRELID2,RELL2,RNF14,SPRY4,YIPF5"
TCGA.AG.A01W.01A	5	140984908	140989364	7	-0.4351	NEUTRAL	NA	1	DIAPH1
TCGA.AG.A01W.01A	5	140994523	141001182	7	0.1765	NEUTRAL	NA	2	"DIAPH1,HDAC3"
TCGA.AZ.4684.01A	5	140998315	145493632	166	-0.0557	NEUTRAL	NA	23	"ARAP3,ARHGAP26,DIAPH1,FCHSD1,FGF1,GNPDA1,GRXCR2,HDAC3,HMHB1,KCTD16,KIAA0141,LARS,NDFIP1,NR3C1,PCDH1,PCDH12,PLAC8L1,PRELID2,RELL2,RNF14,SH3RF2,SPRY4,YIPF5"
TCGA.AA.A01Q.01A	5	141000969	141248127	43	-0.4024	NEUTRAL	NA	5	"ARAP3,FCHSD1,HDAC3,PCDH1,RELL2"
TCGA.AG.A00C.01A	5	141000969	141335689	67	0.0523	NEUTRAL	NA	7	"ARAP3,FCHSD1,HDAC3,KIAA0141,PCDH1,PCDH12,RELL2"
TCGA.AA.A00L.01A	5	141000969	146971173	219	-0.4453	NEUTRAL	NA	30	"ARAP3,ARHGAP26,DPYSL3,FCHSD1,FGF1,GNPDA1,GPR151,GRXCR2,HDAC3,HMHB1,JAKMIP2,KCTD16,KIAA0141,LARS,NDFIP1,NR3C1,PCDH1,PCDH12,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,RELL2,RNF14,SH3RF2,SPRY4,STK32A,TCERG1,YIPF5"
TCGA.AG.A01W.01A	5	141002705	141010769	10	-0.4406	NEUTRAL	NA	1	HDAC3
TCGA.AA.3967.01A	5	141004745	149753707	599	-0.2109	NEUTRAL	NA	62	"ABLIM3,ADRB2,AFAP1L1,ARAP3,ARHGAP26,ARHGEF37,ARSI,C5orf46,CAMK2A,CDX1,CSF1R,CSNK1A1,DPYSL3,FBXO38,FCHSD1,FGF1,GNPDA1,GPR151,GRPEL2,GRXCR2,HDAC3,HMGXB3,HMHB1,HTR4,IL17B,JAKMIP2,KCTD16,KIAA0141,LARS,NDFIP1,NR3C1,PCDH1,PCDH12,PCYOX1L,PDE6A,PDGFRB,PLAC8L1,POU4F3,PPARGC1B,PPP2R2B,PRELID2,RBM27,RELL2,RNF14,SCGB3A2,SH3RF2,SH3TC2,SLC26A2,SLC6A7,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,SPRY4,STK32A,TCERG1,TCOF1,TIGD6,YIPF5"
TCGA.AG.A023.01A	5	141014331	178032265	1859	-0.0567	NEUTRAL	NA	227	Too-Many
TCGA.AA.A010.01A	5	141016079	141041213	28	-0.4099	NEUTRAL	NA	4	"ARAP3,FCHSD1,HDAC3,RELL2"
TCGA.CK.5914.01A	5	141018979	141334996	58	-0.44	NEUTRAL	NA	6	"ARAP3,FCHSD1,KIAA0141,PCDH1,PCDH12,RELL2"
TCGA.AF.3914.01A	5	141018979	170720847	1477	-0.0349	NEUTRAL	NA	151	Too-Many
TCGA.AG.A01W.01A	5	141019128	145611416	162	-0.3589	NEUTRAL	NA	22	"ARAP3,ARHGAP26,FCHSD1,FGF1,GNPDA1,GRXCR2,HMHB1,KCTD16,KIAA0141,LARS,NDFIP1,NR3C1,PCDH1,PCDH12,PLAC8L1,PRELID2,RBM27,RELL2,RNF14,SH3RF2,SPRY4,YIPF5"
TCGA.A6.6140	5	141022847	180692832	14057	0.0148	NEUTRAL	NA	263	Too-Many
TCGA.AG.4009.01A	5	141025616	141304098	33	-0.2816	NEUTRAL	NA	4	"ARAP3,FCHSD1,KIAA0141,PCDH1"
TCGA.AA.A00N.01A	5	141030834	141335689	43	-0.235	NEUTRAL	NA	5	"ARAP3,FCHSD1,KIAA0141,PCDH1,PCDH12"
TCGA.AA.A01K.01A	5	141038913	176397696	1644	0.1741	NEUTRAL	NA	195	Too-Many
TCGA.AA.A010.01A	5	141041560	141354327	36	0.2123	NEUTRAL	NA	5	"ARAP3,KIAA0141,PCDH1,PCDH12,RNF14"
TCGA.AA.A00D.01A	5	141049227	142500516	74	-0.4695	NEUTRAL	NA	10	"ARAP3,ARHGAP26,FGF1,GNPDA1,KIAA0141,NDFIP1,PCDH1,PCDH12,RNF14,SPRY4"
TCGA.AA.3862.01A	5	141052568	145515105	129	0.1269	NEUTRAL	NA	19	"ARAP3,ARHGAP26,FGF1,GNPDA1,GRXCR2,HMHB1,KCTD16,KIAA0141,LARS,NDFIP1,NR3C1,PCDH1,PCDH12,PLAC8L1,PRELID2,RNF14,SH3RF2,SPRY4,YIPF5"
TCGA.AA.3861.01A	5	141052568	145634459	156	-0.0061	NEUTRAL	NA	20	"ARAP3,ARHGAP26,FGF1,GNPDA1,GRXCR2,HMHB1,KCTD16,KIAA0141,LARS,NDFIP1,NR3C1,PCDH1,PCDH12,PLAC8L1,PRELID2,RBM27,RNF14,SH3RF2,SPRY4,YIPF5"
TCGA.AG.A01N.01A	5	141233579	177574492	1824	0.0901	NEUTRAL	NA	218	Too-Many
TCGA.AA.A01Q.01A	5	141303421	141367235	23	0.085	NEUTRAL	NA	3	"KIAA0141,PCDH12,RNF14"
TCGA.AG.4009.01A	5	141304925	141353124	15	0.3318	NEUTRAL	NA	3	"KIAA0141,PCDH12,RNF14"
TCGA.AG.3909.01A	5	141304925	141391428	27	-0.2339	NEUTRAL	NA	4	"GNPDA1,KIAA0141,PCDH12,RNF14"
TCGA.AG.4009.01A	5	141354327	141367235	6	-0.3034	NEUTRAL	NA	1	RNF14
TCGA.AA.A01Q.01A	5	141381547	141511340	7	-0.3706	NEUTRAL	NA	2	"GNPDA1,NDFIP1"
TCGA.AG.3891.01A	5	141391428	145719061	125	-0.0482	NEUTRAL	NA	16	"ARHGAP26,FGF1,GNPDA1,GRXCR2,HMHB1,KCTD16,LARS,NDFIP1,NR3C1,PLAC8L1,POU4F3,PRELID2,RBM27,SH3RF2,SPRY4,YIPF5"
TCGA.AG.4009.01A	5	141511340	141524106	6	-0.3011	NEUTRAL	NA	1	NDFIP1
TCGA.AG.3906.01A	5	141511340	145719061	125	1.00E-04	NEUTRAL	NA	15	"ARHGAP26,FGF1,GRXCR2,HMHB1,KCTD16,LARS,NDFIP1,NR3C1,PLAC8L1,POU4F3,PRELID2,RBM27,SH3RF2,SPRY4,YIPF5"
TCGA.AA.A010.01A	5	141511340	148980630	396	0.2266	NEUTRAL	NA	41	"ABLIM3,ADRB2,AFAP1L1,ARHGAP26,ARHGEF37,C5orf46,CSNK1A1,DPYSL3,FBXO38,FGF1,GPR151,GRPEL2,GRXCR2,HMHB1,HTR4,IL17B,JAKMIP2,KCTD16,LARS,NDFIP1,NR3C1,PCYOX1L,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,SCGB3A2,SH3RF2,SH3TC2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,SPRY4,STK32A,TCERG1,YIPF5"
TCGA.AA.A01Q.01A	5	141511729	145214681	55	0.1099	NEUTRAL	NA	9	"ARHGAP26,FGF1,HMHB1,KCTD16,NDFIP1,NR3C1,PRELID2,SPRY4,YIPF5"
TCGA.AG.A00C.01A	5	141511729	148709191	355	-0.2369	NEUTRAL	NA	36	"ABLIM3,ADRB2,AFAP1L1,ARHGAP26,C5orf46,DPYSL3,FBXO38,FGF1,GPR151,GRXCR2,HMHB1,HTR4,JAKMIP2,KCTD16,LARS,NDFIP1,NR3C1,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,SCGB3A2,SH3RF2,SH3TC2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,SPRY4,STK32A,TCERG1,YIPF5"
TCGA.AG.4009.01A	5	141693783	149516510	465	0.0148	NEUTRAL	NA	47	"ABLIM3,ADRB2,AFAP1L1,ARHGAP26,ARHGEF37,C5orf46,CSF1R,CSNK1A1,DPYSL3,FBXO38,FGF1,GPR151,GRPEL2,GRXCR2,HMGXB3,HMHB1,HTR4,IL17B,JAKMIP2,KCTD16,LARS,NR3C1,PCYOX1L,PDE6A,PDGFRB,PLAC8L1,POU4F3,PPARGC1B,PPP2R2B,PRELID2,RBM27,SCGB3A2,SH3RF2,SH3TC2,SLC26A2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,SPRY4,STK32A,TCERG1,TIGD6,YIPF5"
TCGA.AA.3684	5	141764901	141870608	71	-0.3248	NEUTRAL	NA	0	None
TCGA.AA.3684	5	141872995	180692832	13703	0.13	NEUTRAL	NA	254	Too-Many
TCGA.AA.A00F.01A	5	141980217	148712211	266	-0.411	NEUTRAL	NA	34	"ABLIM3,ADRB2,AFAP1L1,ARHGAP26,C5orf46,DPYSL3,FBXO38,FGF1,GPR151,GRXCR2,HMHB1,HTR4,JAKMIP2,KCTD16,LARS,NR3C1,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,SCGB3A2,SH3RF2,SH3TC2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1,YIPF5"
TCGA.A6.5661	5	142052520	167365438	8856	0.0447	NEUTRAL	NA	127	Too-Many
TCGA.AA.3844	5	142581363	145054725	776	0.1545	NEUTRAL	NA	5	"ARHGAP26,HMHB1,KCTD16,NR3C1,YIPF5"
TCGA.AA.3982	5	142657020	148580024	2020	-0.2144	NEUTRAL	NA	31	"ABLIM3,ADRB2,C5orf46,DPYSL3,FBXO38,GPR151,GRXCR2,HMHB1,HTR4,JAKMIP2,KCTD16,LARS,NR3C1,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,SCGB3A2,SH3RF2,SH3TC2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1,YIPF5"
TCGA.CK.5914.01A	5	142674988	145202568	21	-0.1179	NEUTRAL	NA	5	"HMHB1,KCTD16,NR3C1,PRELID2,YIPF5"
TCGA.A6.2675	5	143141693	180692832	13091	-0.0273	NEUTRAL	NA	251	Too-Many
TCGA.CK.5913	5	143472608	180692832	13019	-0.0009	NEUTRAL	NA	250	Too-Many
TCGA.D5.6539	5	144373341	180692832	12772	-0.0204	NEUTRAL	NA	248	Too-Many
TCGA.CA.5254	5	144517502	174374581	11046	-0.0119	NEUTRAL	NA	159	Too-Many
TCGA.AA.3850	5	145052151	147346436	795	-0.15115	NEUTRAL	NA	16	"C5orf46,DPYSL3,GPR151,GRXCR2,JAKMIP2,LARS,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,SCGB3A2,SH3RF2,SPINK1,STK32A,TCERG1"
TCGA.AA.3941	5	145054725	147203905	722	-0.0763	NEUTRAL	NA	13	"DPYSL3,GPR151,GRXCR2,JAKMIP2,LARS,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,SH3RF2,STK32A,TCERG1"
TCGA.DY.A1DC	5	145072131	147733044	933	0.0226	NEUTRAL	NA	22	"C5orf46,DPYSL3,GPR151,GRXCR2,JAKMIP2,LARS,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,SCGB3A2,SH3RF2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1"
TCGA.CM.6167	5	145081118	180692832	12568	0.1519	NEUTRAL	NA	248	Too-Many
TCGA.DM.A0XD	5	145221508	177386312	11533	-0.0022	NEUTRAL	NA	201	Too-Many
TCGA.AG.3611.01A	5	145246037	149588921	335	-0.3659	NEUTRAL	NA	41	"ABLIM3,ADRB2,AFAP1L1,ARHGEF37,C5orf46,CDX1,CSF1R,CSNK1A1,DPYSL3,FBXO38,GPR151,GRPEL2,GRXCR2,HMGXB3,HTR4,IL17B,JAKMIP2,LARS,PCYOX1L,PDE6A,PDGFRB,PLAC8L1,POU4F3,PPARGC1B,PPP2R2B,RBM27,SCGB3A2,SH3RF2,SH3TC2,SLC26A2,SLC6A7,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1,TIGD6"
TCGA.AA.A01Q.01A	5	145464986	147715104	113	0.1364	NEUTRAL	NA	18	"C5orf46,DPYSL3,GPR151,JAKMIP2,LARS,PLAC8L1,POU4F3,PPP2R2B,RBM27,SCGB3A2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,STK32A,TCERG1"
TCGA.CK.4948.01B	5	145493632	145512409	10	0.3539	NEUTRAL	NA	1	LARS
TCGA.AZ.4684.01A	5	145510528	145651009	38	-0.3968	NEUTRAL	NA	2	"LARS,RBM27"
TCGA.CK.4948.01B	5	145515105	147261029	128	0.0016	NEUTRAL	NA	11	"DPYSL3,GPR151,JAKMIP2,LARS,POU4F3,PPP2R2B,RBM27,SCGB3A2,SPINK1,STK32A,TCERG1"
TCGA.CK.5914.01A	5	145529122	145849069	42	-0.3758	NEUTRAL	NA	4	"LARS,POU4F3,RBM27,TCERG1"
TCGA.AA.A00N.01A	5	145538905	145610188	14	-0.0774	NEUTRAL	NA	2	"LARS,RBM27"
TCGA.AA.A00D.01A	5	145551413	145889952	30	-0.166	NEUTRAL	NA	4	"LARS,POU4F3,RBM27,TCERG1"
TCGA.AA.A00N.01A	5	145612965	145665453	14	0.3774	NEUTRAL	NA	1	RBM27
TCGA.AG.3909.01A	5	145631222	145826844	15	-0.0357	NEUTRAL	NA	2	"POU4F3,RBM27"
TCGA.AZ.4684.01A	5	145664146	147016492	76	0.189	NEUTRAL	NA	8	"DPYSL3,GPR151,JAKMIP2,POU4F3,PPP2R2B,RBM27,STK32A,TCERG1"
TCGA.AG.A01W.01A	5	145698818	149482767	356	-0.2961	NEUTRAL	NA	33	"ABLIM3,ADRB2,AFAP1L1,ARHGEF37,C5orf46,CSF1R,CSNK1A1,DPYSL3,FBXO38,GPR151,GRPEL2,HMGXB3,HTR4,IL17B,JAKMIP2,PCYOX1L,PDE6A,POU4F3,PPARGC1B,PPP2R2B,SCGB3A2,SH3TC2,SLC26A2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1,TIGD6"
TCGA.AA.A02K.01A	5	145826845	148729159	235	-0.17	NEUTRAL	NA	22	"ABLIM3,ADRB2,AFAP1L1,C5orf46,DPYSL3,FBXO38,GPR151,GRPEL2,HTR4,JAKMIP2,PPP2R2B,SCGB3A2,SH3TC2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1"
TCGA.AG.3906.01A	5	145847838	146730576	36	-0.1218	NEUTRAL	NA	4	"GPR151,PPP2R2B,STK32A,TCERG1"
TCGA.AG.3891.01A	5	145847838	157158402	841	-0.079	NEUTRAL	NA	89	"ABLIM3,ADAM19,ADRB2,AFAP1L1,ANXA6,ARHGEF37,ARSI,ATOX1,C5orf46,C5orf52,CAMK2A,CCDC69,CD74,CDX1,CNOT8,CSF1R,CSNK1A1,CYFIP2,DCTN4,DPYSL3,FAM114A2,FAM71B,FAT2,FAXDC2,FBXO38,FNDC9,G3BP1,GALNT10,GEMIN5,GLRA1,GM2A,GPR151,GPX3,GRIA1,GRPEL2,HAND1,HAVCR1,HAVCR2,HMGXB3,HTR4,IL17B,IRGM,ITK,JAKMIP2,KIF4B,LARP1,LOC100652758,MED7,MFAP3,MRPL22,MYOZ3,NDST1,NIPAL4,NMUR2,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,PPP2R2B,RBM22,RPS14,SAP30L,SCGB3A2,SGCD,SH3TC2,SLC26A2,SLC36A1,SLC36A2,SLC36A3,SLC6A7,SMIM3,SOX30,SPARC,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,SYNPO,TCERG1,TCOF1,THG1L,TIGD6,TIMD4,TNIP1,ZNF300"
TCGA.CK.5914.01A	5	145850148	147497953	108	0.2739	NEUTRAL	NA	10	"C5orf46,DPYSL3,GPR151,JAKMIP2,PPP2R2B,SCGB3A2,SPINK1,SPINK5,STK32A,TCERG1"
TCGA.AG.3909.01A	5	145858009	145872442	5	-0.0689	NEUTRAL	NA	1	TCERG1
TCGA.AA.3862.01A	5	145887378	149740650	390	0.1581	NEUTRAL	NA	38	"ABLIM3,ADRB2,AFAP1L1,ARHGEF37,ARSI,C5orf46,CAMK2A,CDX1,CSF1R,CSNK1A1,DPYSL3,FBXO38,GPR151,GRPEL2,HMGXB3,HTR4,IL17B,JAKMIP2,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,PPP2R2B,SCGB3A2,SH3TC2,SLC26A2,SLC6A7,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1,TCOF1,TIGD6"
TCGA.AA.3844	5	145949308	147588166	626	0.2099	NEUTRAL	NA	10	"C5orf46,DPYSL3,JAKMIP2,PPP2R2B,SCGB3A2,SPINK1,SPINK14,SPINK5,SPINK6,STK32A"
TCGA.AA.3861.01A	5	145969512	158585666	891	-0.059	NEUTRAL	NA	91	"ABLIM3,ADAM19,ADRB2,AFAP1L1,ANXA6,ARHGEF37,ARSI,ATOX1,C5orf46,C5orf52,CAMK2A,CCDC69,CD74,CDX1,CLINT1,CNOT8,CSF1R,CSNK1A1,CYFIP2,DCTN4,DPYSL3,EBF1,FAM114A2,FAM71B,FAT2,FAXDC2,FBXO38,FNDC9,G3BP1,GALNT10,GEMIN5,GLRA1,GM2A,GPX3,GRIA1,GRPEL2,HAND1,HAVCR1,HAVCR2,HMGXB3,HTR4,IL17B,IRGM,ITK,JAKMIP2,KIF4B,LARP1,LOC100652758,LSM11,MED7,MFAP3,MRPL22,MYOZ3,NDST1,NIPAL4,NMUR2,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,PPP2R2B,RBM22,RNF145,RPS14,SAP30L,SCGB3A2,SGCD,SH3TC2,SLC26A2,SLC36A1,SLC36A2,SLC36A3,SLC6A7,SMIM3,SOX30,SPARC,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,SYNPO,TCOF1,THG1L,TIGD6,TIMD4,TNIP1,ZNF300"
TCGA.AG.3906.01A	5	146741028	146763438	6	0.3142	NEUTRAL	NA	1	STK32A
TCGA.D5.5539	5	146771103	165634455	6600	0.2612	NEUTRAL	NA	109	Too-Many
TCGA.AG.3906.01A	5	146773544	149924827	376	-0.0123	NEUTRAL	NA	37	"ABLIM3,ADRB2,AFAP1L1,ARHGEF37,ARSI,C5orf46,CAMK2A,CD74,CDX1,CSF1R,CSNK1A1,DPYSL3,FBXO38,GRPEL2,HMGXB3,HTR4,IL17B,JAKMIP2,NDST1,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,RPS14,SCGB3A2,SH3TC2,SLC26A2,SLC6A7,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,TCOF1,TIGD6"
TCGA.AZ.4684.01A	5	147023589	147653827	58	0.3242	NEUTRAL	NA	8	"C5orf46,JAKMIP2,SCGB3A2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6"
TCGA.AA.3994	5	147114855	180692832	11869	0.0044	NEUTRAL	NA	236	Too-Many
TCGA.AA.3941	5	147211392	148488315	518	-0.4194	NEUTRAL	NA	13	"ADRB2,C5orf46,FBXO38,HTR4,SCGB3A2,SH3TC2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9"
TCGA.CK.4948.01B	5	147261500	147493916	25	0.2939	NEUTRAL	NA	3	"C5orf46,SCGB3A2,SPINK5"
TCGA.CK.4948.01B	5	147495880	170738354	1222	0.0034	NEUTRAL	NA	120	Too-Many
TCGA.CK.5914.01A	5	147498488	147510773	8	-0.4991	NEUTRAL	NA	1	SPINK5
TCGA.CK.5914.01A	5	147513305	147796517	32	-0.0626	NEUTRAL	NA	7	"FBXO38,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9"
TCGA.AA.3844	5	147605657	147845814	72	-0.2059	NEUTRAL	NA	5	"FBXO38,HTR4,SPINK13,SPINK7,SPINK9"
TCGA.AA.A01Q.01A	5	147715909	147805037	16	-0.2027	NEUTRAL	NA	2	"FBXO38,SPINK9"
TCGA.AA.A00L.01A	5	147793672	160763592	701	-0.3827	NEUTRAL	NA	91	"ABLIM3,ADAM19,ADRA1B,ADRB2,AFAP1L1,ANXA6,ARHGEF37,ARSI,ATOX1,ATP10B,C1QTNF2,C5orf52,CAMK2A,CCDC69,CCNJL,CD74,CDX1,CLINT1,CNOT8,CSF1R,CSNK1A1,CYFIP2,DCTN4,EBF1,FABP6,FAM114A2,FAM71B,FAT2,FAXDC2,FBXO38,FNDC9,G3BP1,GABRB2,GALNT10,GEMIN5,GLRA1,GM2A,GPX3,GRIA1,GRPEL2,HAND1,HAVCR1,HAVCR2,HMGXB3,HTR4,IL12B,IL17B,IRGM,ITK,KIF4B,LARP1,LOC100652758,LSM11,MED7,MFAP3,MRPL22,MYOZ3,NDST1,NIPAL4,NMUR2,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,PTTG1,PWWP2A,RBM22,RNF145,RPS14,SAP30L,SGCD,SH3TC2,SLC26A2,SLC36A1,SLC36A2,SLC36A3,SLC6A7,SLU7,SMIM3,SOX30,SPARC,SYNPO,TCOF1,THG1L,TIGD6,TIMD4,TNIP1,TTC1,UBLCP1,ZBED8,ZNF300"
TCGA.DY.A1DC	5	147794060	154850316	2601	-0.02	NEUTRAL	NA	60	"ABLIM3,ADRB2,AFAP1L1,ANXA6,ARHGEF37,ARSI,ATOX1,CAMK2A,CCDC69,CD74,CDX1,CNOT8,CSF1R,CSNK1A1,DCTN4,FAM114A2,FAT2,FAXDC2,FBXO38,G3BP1,GALNT10,GEMIN5,GLRA1,GM2A,GPX3,GRIA1,GRPEL2,HAND1,HMGXB3,HTR4,IL17B,IRGM,KIF4B,LARP1,LOC100652758,MFAP3,MRPL22,MYOZ3,NDST1,NMUR2,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,RBM22,RPS14,SAP30L,SH3TC2,SLC26A2,SLC36A1,SLC36A2,SLC36A3,SLC6A7,SMIM3,SPARC,SYNPO,TCOF1,TIGD6,TNIP1,ZNF300"
TCGA.A6.3808.01A	5	147796517	149737273	255	0.0881	NEUTRAL	NA	23	"ABLIM3,ADRB2,AFAP1L1,ARHGEF37,ARSI,CAMK2A,CDX1,CSF1R,CSNK1A1,FBXO38,GRPEL2,HMGXB3,HTR4,IL17B,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,SH3TC2,SLC26A2,SLC6A7,TCOF1,TIGD6"
TCGA.AA.A01Q.01A	5	147806729	149433580	147	0.2186	NEUTRAL	NA	17	"ABLIM3,ADRB2,AFAP1L1,ARHGEF37,CSF1R,CSNK1A1,FBXO38,GRPEL2,HMGXB3,HTR4,IL17B,PCYOX1L,PDE6A,PPARGC1B,SH3TC2,SLC26A2,TIGD6"
TCGA.AA.3509.01A	5	147821515	153407661	512	0.0223	NEUTRAL	NA	50	"ABLIM3,ADRB2,AFAP1L1,ANXA6,ARHGEF37,ARSI,ATOX1,CAMK2A,CCDC69,CD74,CDX1,CSF1R,CSNK1A1,DCTN4,FAM114A2,FAT2,FBXO38,G3BP1,GLRA1,GM2A,GPX3,GRIA1,GRPEL2,HMGXB3,HTR4,IL17B,IRGM,LOC100652758,MYOZ3,NDST1,NMUR2,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,RBM22,RPS14,SH3TC2,SLC26A2,SLC36A1,SLC36A2,SLC36A3,SLC6A7,SMIM3,SPARC,SYNPO,TCOF1,TIGD6,TNIP1,ZNF300"
TCGA.AZ.4684.01A	5	147821515	153407661	512	-0.0736	NEUTRAL	NA	50	"ABLIM3,ADRB2,AFAP1L1,ANXA6,ARHGEF37,ARSI,ATOX1,CAMK2A,CCDC69,CD74,CDX1,CSF1R,CSNK1A1,DCTN4,FAM114A2,FAT2,FBXO38,G3BP1,GLRA1,GM2A,GPX3,GRIA1,GRPEL2,HMGXB3,HTR4,IL17B,IRGM,LOC100652758,MYOZ3,NDST1,NMUR2,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,RBM22,RPS14,SH3TC2,SLC26A2,SLC36A1,SLC36A2,SLC36A3,SLC6A7,SMIM3,SPARC,SYNPO,TCOF1,TIGD6,TNIP1,ZNF300"
TCGA.AA.3844	5	147846706	148624209	330	0.3749	NEUTRAL	NA	4	"ABLIM3,ADRB2,HTR4,SH3TC2"
TCGA.A6.6648	5	147987976	170864020	8394	-0.3085	NEUTRAL	NA	115	Too-Many
TCGA.AG.3909.01A	5	148016468	148207803	5	-0.5129	NEUTRAL	NA	2	"ADRB2,HTR4"
TCGA.AA.3850	5	148104166	148562059	227	-0.03315	NEUTRAL	NA	3	"ABLIM3,ADRB2,SH3TC2"
TCGA.AA.3811	5	148171216	151303339	1223	-0.0716	NEUTRAL	NA	45	"ABLIM3,ADRB2,AFAP1L1,ANXA6,ARHGEF37,ARSI,ATOX1,CAMK2A,CCDC69,CD74,CDX1,CSF1R,CSNK1A1,DCTN4,FAT2,G3BP1,GLRA1,GM2A,GPX3,GRPEL2,HMGXB3,IL17B,IRGM,LOC100652758,MYOZ3,NDST1,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,RBM22,RPS14,SH3TC2,SLC26A2,SLC36A1,SLC36A2,SLC36A3,SLC6A7,SMIM3,SPARC,SYNPO,TCOF1,TIGD6,TNIP1,ZNF300"
TCGA.CK.5914.01A	5	148384225	148562966	18	0.2624	NEUTRAL	NA	2	"ABLIM3,SH3TC2"
TCGA.AA.3941	5	148490750	150264413	612	0.3372	NEUTRAL	NA	28	"ABLIM3,AFAP1L1,ARHGEF37,ARSI,CAMK2A,CD74,CDX1,CSF1R,CSNK1A1,DCTN4,GRPEL2,HMGXB3,IL17B,IRGM,MYOZ3,NDST1,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,RBM22,RPS14,SLC26A2,SLC6A7,SMIM3,SYNPO,TCOF1,TIGD6"
TCGA.AA.3850	5	148562889	149390221	306	0.36775	NEUTRAL	NA	12	"ABLIM3,AFAP1L1,ARHGEF37,CSNK1A1,GRPEL2,HMGXB3,IL17B,PCYOX1L,PDE6A,PPARGC1B,SLC26A2,TIGD6"
TCGA.AA.3982	5	148580284	149424965	323	0.2664	NEUTRAL	NA	12	"ABLIM3,AFAP1L1,ARHGEF37,CSNK1A1,GRPEL2,HMGXB3,IL17B,PCYOX1L,PDE6A,PPARGC1B,SLC26A2,TIGD6"
TCGA.AA.3527	5	148695646	180692832	11252	-0.0096	NEUTRAL	NA	221	Too-Many
TCGA.AG.A00C.01A	5	148712211	148998449	33	0.0245	NEUTRAL	NA	6	"AFAP1L1,ARHGEF37,CSNK1A1,GRPEL2,IL17B,PCYOX1L"
TCGA.CK.5914.01A	5	148715110	148758682	14	-0.4334	NEUTRAL	NA	4	"AFAP1L1,GRPEL2,IL17B,PCYOX1L"
TCGA.AA.A00F.01A	5	148715110	149112320	22	-0.0794	NEUTRAL	NA	7	"AFAP1L1,ARHGEF37,CSNK1A1,GRPEL2,IL17B,PCYOX1L,PPARGC1B"
TCGA.AA.A02K.01A	5	148730430	148756321	8	0.2435	NEUTRAL	NA	3	"GRPEL2,IL17B,PCYOX1L"
TCGA.AA.A02K.01A	5	148758683	149424984	81	-0.0878	NEUTRAL	NA	8	"ARHGEF37,CSNK1A1,HMGXB3,IL17B,PDE6A,PPARGC1B,SLC26A2,TIGD6"
TCGA.AA.A00N.01A	5	148808443	148980630	15	0.2623	NEUTRAL	NA	2	"ARHGEF37,CSNK1A1"
TCGA.AG.3909.01A	5	148808443	148999885	20	0.3375	NEUTRAL	NA	2	"ARHGEF37,CSNK1A1"
TCGA.DM.A28A	5	148819290	148893184	19	0.1996	NEUTRAL	NA	1	CSNK1A1
TCGA.AG.A00C.01A	5	148999885	149276210	32	-0.4392	NEUTRAL	NA	3	"ARHGEF37,PDE6A,PPARGC1B"
TCGA.DM.A28A	5	149020604	180692832	11136	0.0112	NEUTRAL	NA	215	Too-Many
TCGA.AA.A00F.01A	5	149199967	149310572	32	-0.4296	NEUTRAL	NA	2	"PDE6A,PPARGC1B"
TCGA.AG.A00C.01A	5	149277885	149681629	83	-0.0913	NEUTRAL	NA	10	"ARSI,CAMK2A,CDX1,CSF1R,HMGXB3,PDE6A,PDGFRB,SLC26A2,SLC6A7,TIGD6"
TCGA.AA.A00F.01A	5	149313458	149375654	7	0.0291	NEUTRAL	NA	3	"PDE6A,SLC26A2,TIGD6"
TCGA.AA.A010.01A	5	149323732	149359809	3	-0.0835	NEUTRAL	NA	2	"PDE6A,SLC26A2"
TCGA.AA.A010.01A	5	149410256	149425008	7	0.0682	NEUTRAL	NA	1	HMGXB3
TCGA.AA.A00F.01A	5	149416152	150027487	101	-0.3271	NEUTRAL	NA	12	"ARSI,CAMK2A,CD74,CDX1,CSF1R,HMGXB3,NDST1,PDGFRB,RPS14,SLC6A7,SYNPO,TCOF1"
TCGA.AA.A02K.01A	5	149427137	149447807	12	-0.454	NEUTRAL	NA	2	"CSF1R,HMGXB3"
TCGA.AG.3909.01A	5	149431348	149758416	80	0.261	NEUTRAL	NA	8	"ARSI,CAMK2A,CDX1,CSF1R,HMGXB3,PDGFRB,SLC6A7,TCOF1"
TCGA.AA.A01Q.01A	5	149434783	150042434	114	-0.2501	NEUTRAL	NA	12	"ARSI,CAMK2A,CD74,CDX1,CSF1R,MYOZ3,NDST1,PDGFRB,RPS14,SLC6A7,SYNPO,TCOF1"
TCGA.AA.A02K.01A	5	149449390	175958986	1201	-0.1084	NEUTRAL	NA	135	Too-Many
TCGA.CK.5914.01A	5	149449758	149758416	74	-0.021	NEUTRAL	NA	7	"ARSI,CAMK2A,CDX1,CSF1R,PDGFRB,SLC6A7,TCOF1"
TCGA.AM.5820	5	149454282	149489241	19	-0.0523	NEUTRAL	NA	1	CSF1R
TCGA.AA.A010.01A	5	149513122	149546403	5	0.3142	NEUTRAL	NA	2	"CDX1,PDGFRB"
TCGA.AA.A00N.01A	5	149513122	149619187	25	0.1221	NEUTRAL	NA	4	"CAMK2A,CDX1,PDGFRB,SLC6A7"
TCGA.AA.A010.01A	5	149562299	149584047	11	-0.251	NEUTRAL	NA	2	"CDX1,SLC6A7"
TCGA.AG.4009.01A	5	149562299	149588921	13	-0.3165	NEUTRAL	NA	2	"CDX1,SLC6A7"
TCGA.AA.A010.01A	5	149584340	149619187	9	0.2861	NEUTRAL	NA	2	"CAMK2A,SLC6A7"
TCGA.AG.3611.01A	5	149602500	149676739	3	0.0801	NEUTRAL	NA	2	"ARSI,CAMK2A"
TCGA.AA.A00N.01A	5	149676739	149763210	17	-0.0682	NEUTRAL	NA	2	"ARSI,TCOF1"
TCGA.AG.3611.01A	5	149677199	156390079	322	-0.3545	NEUTRAL	NA	41	"ANXA6,ARSI,ATOX1,CCDC69,CD74,CNOT8,DCTN4,FAM114A2,FAT2,FAXDC2,G3BP1,GALNT10,GEMIN5,GLRA1,GM2A,GPX3,GRIA1,HAND1,IRGM,KIF4B,LARP1,LOC100652758,MFAP3,MRPL22,MYOZ3,NDST1,NMUR2,RBM22,RPS14,SAP30L,SGCD,SLC36A1,SLC36A2,SLC36A3,SMIM3,SPARC,SYNPO,TCOF1,TIMD4,TNIP1,ZNF300"
TCGA.AG.4009.01A	5	149740650	149932728	48	0.182	NEUTRAL	NA	4	"CD74,NDST1,RPS14,TCOF1"
TCGA.AG.A00C.01A	5	149758770	153796326	267	-0.1963	NEUTRAL	NA	30	"ANXA6,ATOX1,CCDC69,CD74,DCTN4,FAM114A2,FAT2,G3BP1,GALNT10,GLRA1,GM2A,GPX3,GRIA1,IRGM,LOC100652758,MFAP3,MYOZ3,NDST1,NMUR2,RBM22,RPS14,SLC36A1,SLC36A2,SLC36A3,SMIM3,SPARC,SYNPO,TCOF1,TNIP1,ZNF300"
TCGA.AA.3967.01A	5	149778498	150078717	44	-0.0024	NEUTRAL	NA	7	"CD74,MYOZ3,NDST1,RBM22,RPS14,SYNPO,TCOF1"
TCGA.AA.3862.01A	5	149781732	158585666	488	0.1144	NEUTRAL	NA	55	"ADAM19,ANXA6,ATOX1,C5orf52,CCDC69,CD74,CLINT1,CNOT8,CYFIP2,DCTN4,EBF1,FAM114A2,FAM71B,FAT2,FAXDC2,FNDC9,G3BP1,GALNT10,GEMIN5,GLRA1,GM2A,GPX3,GRIA1,HAND1,HAVCR1,HAVCR2,IRGM,ITK,KIF4B,LARP1,LOC100652758,LSM11,MED7,MFAP3,MRPL22,MYOZ3,NDST1,NIPAL4,NMUR2,RBM22,RNF145,RPS14,SAP30L,SGCD,SLC36A1,SLC36A2,SLC36A3,SMIM3,SOX30,SPARC,SYNPO,THG1L,TIMD4,TNIP1,ZNF300"
TCGA.AG.3909.01A	5	149823814	150480937	77	0.2184	NEUTRAL	NA	12	"ANXA6,DCTN4,GPX3,IRGM,MYOZ3,NDST1,RBM22,RPS14,SMIM3,SYNPO,TNIP1,ZNF300"
TCGA.AA.A00N.01A	5	149827100	150027487	17	0.2967	NEUTRAL	NA	3	"NDST1,RPS14,SYNPO"
TCGA.AM.5820	5	149910985	172376177	8285	0.0112	NEUTRAL	NA	101	Too-Many
TCGA.CK.5914.01A	5	150027487	150411795	48	-0.3666	NEUTRAL	NA	9	"DCTN4,GPX3,IRGM,MYOZ3,RBM22,SMIM3,SYNPO,TNIP1,ZNF300"
TCGA.AA.A00F.01A	5	150030246	150078717	14	0.0121	NEUTRAL	NA	3	"MYOZ3,RBM22,SYNPO"
TCGA.AG.4009.01A	5	150042434	150400161	35	0.0201	NEUTRAL	NA	7	"DCTN4,GPX3,IRGM,MYOZ3,RBM22,SMIM3,ZNF300"
TCGA.AA.A01Q.01A	5	150050007	150138391	27	0.304	NEUTRAL	NA	3	"DCTN4,MYOZ3,RBM22"
TCGA.AG.3906.01A	5	150050007	157158402	411	0.0424	NEUTRAL	NA	47	"ADAM19,ANXA6,ATOX1,C5orf52,CCDC69,CNOT8,CYFIP2,DCTN4,FAM114A2,FAM71B,FAT2,FAXDC2,FNDC9,G3BP1,GALNT10,GEMIN5,GLRA1,GM2A,GPX3,GRIA1,HAND1,HAVCR1,HAVCR2,IRGM,ITK,KIF4B,LARP1,LOC100652758,MED7,MFAP3,MRPL22,MYOZ3,NIPAL4,NMUR2,RBM22,SAP30L,SGCD,SLC36A1,SLC36A2,SLC36A3,SMIM3,SOX30,SPARC,THG1L,TIMD4,TNIP1,ZNF300"
TCGA.AA.A010.01A	5	150051089	150073591	7	-0.3108	NEUTRAL	NA	2	"MYOZ3,RBM22"
TCGA.AA.3982	5	150060363	150365021	71	0.1246	NEUTRAL	NA	5	"DCTN4,IRGM,RBM22,SMIM3,ZNF300"
TCGA.AA.A00F.01A	5	150079936	153826114	186	-0.3736	NEUTRAL	NA	25	"ANXA6,ATOX1,CCDC69,DCTN4,FAM114A2,FAT2,G3BP1,GALNT10,GLRA1,GM2A,GPX3,GRIA1,IRGM,LOC100652758,MFAP3,NMUR2,RBM22,SAP30L,SLC36A1,SLC36A2,SLC36A3,SMIM3,SPARC,TNIP1,ZNF300"
TCGA.AA.3494	5	150100685	180692832	10760	-0.0331	NEUTRAL	NA	197	Too-Many
TCGA.AA.3967.01A	5	150102408	180686963	1582	-0.2104	NEUTRAL	NA	197	Too-Many
TCGA.AA.3844	5	150157024	150365021	53	0.2246	NEUTRAL	NA	3	"IRGM,SMIM3,ZNF300"
TCGA.AA.A01Q.01A	5	150274975	150444474	22	-0.3515	NEUTRAL	NA	3	"GPX3,TNIP1,ZNF300"
TCGA.AA.3850	5	150282783	151421778	501	0.22665	NEUTRAL	NA	15	"ANXA6,ATOX1,CCDC69,FAT2,G3BP1,GLRA1,GM2A,GPX3,LOC100652758,SLC36A1,SLC36A2,SLC36A3,SPARC,TNIP1,ZNF300"
TCGA.AA.3941	5	150284807	150376965	35	-0.0878	NEUTRAL	NA	0	None
TCGA.AA.3941	5	150379920	151182635	379	0.2912	NEUTRAL	NA	13	"ANXA6,ATOX1,CCDC69,FAT2,G3BP1,GM2A,GPX3,LOC100652758,SLC36A1,SLC36A2,SLC36A3,SPARC,TNIP1"
TCGA.AF.4110	5	150399209	180692832	10679	0.0051	NEUTRAL	NA	193	Too-Many
TCGA.CK.5914.01A	5	150413120	150444474	15	0.1452	NEUTRAL	NA	1	TNIP1
TCGA.AG.4009.01A	5	150439819	150675688	49	0.0377	NEUTRAL	NA	5	"ANXA6,CCDC69,GM2A,SLC36A3,TNIP1"
TCGA.AA.A02F.01A	5	150444474	180686963	1343	0.059	NEUTRAL	NA	192	Too-Many
TCGA.AA.A010.01A	5	150484744	150639264	34	0.3302	NEUTRAL	NA	3	"ANXA6,CCDC69,GM2A"
TCGA.AA.A01Q.01A	5	150496613	153795311	151	0.2404	NEUTRAL	NA	17	"ANXA6,ATOX1,CCDC69,FAM114A2,FAT2,G3BP1,GALNT10,GLRA1,GM2A,GRIA1,LOC100652758,MFAP3,NMUR2,SLC36A1,SLC36A2,SLC36A3,SPARC"
TCGA.AG.3909.01A	5	150603411	150646275	4	-0.2079	NEUTRAL	NA	2	"CCDC69,GM2A"
TCGA.AA.3982	5	150639633	151182635	244	0.2155	NEUTRAL	NA	9	"ATOX1,FAT2,G3BP1,GM2A,LOC100652758,SLC36A1,SLC36A2,SLC36A3,SPARC"
TCGA.AG.3909.01A	5	150646840	150886676	33	0.3761	NEUTRAL	NA	5	"FAT2,GM2A,SLC36A1,SLC36A2,SLC36A3"
TCGA.AG.A01W.01A	5	150692927	150869748	20	-0.1316	NEUTRAL	NA	2	"SLC36A1,SLC36A2"
TCGA.AG.4009.01A	5	150712733	151055622	51	0.1379	NEUTRAL	NA	4	"FAT2,SLC36A1,SLC36A2,SPARC"
TCGA.AG.A01W.01A	5	150871882	153370958	82	-0.3905	NEUTRAL	NA	9	"ATOX1,FAT2,G3BP1,GLRA1,GRIA1,LOC100652758,NMUR2,SLC36A1,SPARC"
TCGA.AG.3909.01A	5	150889535	150922828	14	-0.2299	NEUTRAL	NA	1	FAT2
TCGA.BM.6198	5	150966326	157777399	2431	0.05855	NEUTRAL	NA	34	"ADAM19,ATOX1,C5orf52,CLINT1,CNOT8,CYFIP2,FAM114A2,FAM71B,FAXDC2,FNDC9,G3BP1,GALNT10,GEMIN5,GLRA1,GRIA1,HAND1,HAVCR1,HAVCR2,ITK,KIF4B,LARP1,LOC100652758,LSM11,MED7,MFAP3,MRPL22,NIPAL4,NMUR2,SAP30L,SGCD,SOX30,SPARC,THG1L,TIMD4"
TCGA.AA.A00N.01A	5	151125876	151180274	13	-0.1403	NEUTRAL	NA	3	"ATOX1,G3BP1,LOC100652758"
TCGA.AG.3909.01A	5	151125876	151180274	12	-0.0269	NEUTRAL	NA	3	"ATOX1,G3BP1,LOC100652758"
TCGA.AG.4009.01A	5	151125876	151235814	18	-0.2516	NEUTRAL	NA	4	"ATOX1,G3BP1,GLRA1,LOC100652758"
TCGA.AA.A010.01A	5	151180274	151783902	15	0.2717	NEUTRAL	NA	3	"G3BP1,GLRA1,NMUR2"
TCGA.AA.3941	5	151185461	151421778	86	-0.0008	NEUTRAL	NA	1	GLRA1
TCGA.AA.3982	5	151185461	152357769	422	-0.2767	NEUTRAL	NA	2	"GLRA1,NMUR2"
TCGA.AA.3844	5	151193636	153338309	793	0.1491	NEUTRAL	NA	3	"GLRA1,GRIA1,NMUR2"
TCGA.AG.4009.01A	5	151239299	153796326	53	0.0475	NEUTRAL	NA	6	"FAM114A2,GALNT10,GLRA1,GRIA1,MFAP3,NMUR2"
TCGA.AA.3811	5	151320911	166918124	5320	-0.3861	NEUTRAL	NA	52	"ADAM19,ADRA1B,ATP10B,C1QTNF2,C5orf52,CCNG1,CCNJL,CLINT1,CNOT8,CYFIP2,EBF1,FABP6,FAM114A2,FAM71B,FAXDC2,FNDC9,GABRA1,GABRA6,GABRB2,GABRG2,GALNT10,GEMIN5,GRIA1,HAND1,HAVCR1,HAVCR2,HMMR,IL12B,ITK,KIF4B,LARP1,LSM11,MAT2B,MED7,MFAP3,MRPL22,NIPAL4,NMUR2,NUDCD2,PTTG1,PWWP2A,RNF145,SAP30L,SGCD,SLU7,SOX30,TENM2,THG1L,TIMD4,TTC1,UBLCP1,ZBED8"
TCGA.AA.3850	5	151423926	153457785	741	-0.41755	NEUTRAL	NA	4	"FAM114A2,GRIA1,MFAP3,NMUR2"
TCGA.AA.3511	5	151521398	180692832	10132	0.0294	NEUTRAL	NA	179	Too-Many
TCGA.AA.3852	5	151521398	180692832	10160	-0.0307	NEUTRAL	NA	179	Too-Many
TCGA.AA.A02O	5	151521398	180692832	10155	-0.0211	NEUTRAL	NA	179	Too-Many
TCGA.CM.6163	5	151594904	154888895	1135	0.1472	NEUTRAL	NA	13	"CNOT8,FAM114A2,FAXDC2,GALNT10,GEMIN5,GRIA1,HAND1,KIF4B,LARP1,MFAP3,MRPL22,NMUR2,SAP30L"
TCGA.DM.A1D9	5	151594904	173201916	7939	-0.0032	NEUTRAL	NA	86	"ADAM19,ADRA1B,ATP10B,ATP6V0E1,BNIP1,BOD1,C1QTNF2,C5orf52,C5orf58,CCNG1,CCNJL,CLINT1,CNOT8,CREBRF,CYFIP2,DOCK2,DUSP1,EBF1,EFCAB9,ERGIC1,FABP6,FAM114A2,FAM196B,FAM71B,FAXDC2,FBXW11,FGF18,FNDC9,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GABRP,GALNT10,GEMIN5,GRIA1,HAND1,HAVCR1,HAVCR2,HMMR,IL12B,ITK,KCNIP1,KCNMB1,KIF4B,LARP1,LCP2,LOC101928093,LSM11,MAT2B,MED7,MFAP3,MRPL22,NEURL1B,NIPAL4,NKX2-5,NMUR2,NPM1,NUDCD2,PANK3,PTTG1,PWWP2A,RANBP17,RARS,RNF145,RPL26L1,SAP30L,SGCD,SH3PXD2B,SLIT3,SLU7,SMIM23,SOX30,SPDL1,STC2,STK10,TENM2,THG1L,TIMD4,TLX3,TTC1,UBLCP1,UBTD2,WWC1,ZBED8"
TCGA.CM.6170	5	151665188	162524976	3717	0.0455	NEUTRAL	NA	47	"ADAM19,ADRA1B,ATP10B,C1QTNF2,C5orf52,CCNJL,CLINT1,CNOT8,CYFIP2,EBF1,FABP6,FAM114A2,FAM71B,FAXDC2,FNDC9,GABRA1,GABRA6,GABRB2,GABRG2,GALNT10,GEMIN5,GRIA1,HAND1,HAVCR1,HAVCR2,IL12B,ITK,KIF4B,LARP1,LSM11,MED7,MFAP3,MRPL22,NIPAL4,NMUR2,PTTG1,PWWP2A,RNF145,SAP30L,SGCD,SLU7,SOX30,THG1L,TIMD4,TTC1,UBLCP1,ZBED8"
TCGA.AA.3982	5	152362705	153444949	396	-0.2866	NEUTRAL	NA	3	"FAM114A2,GRIA1,MFAP3"
TCGA.AA.3941	5	152821588	153457785	252	-0.2492	NEUTRAL	NA	3	"FAM114A2,GRIA1,MFAP3"
TCGA.AA.A010.01A	5	152870390	153409017	27	-0.2487	NEUTRAL	NA	2	"FAM114A2,GRIA1"
TCGA.AG.3909.01A	5	153377310	153435555	15	0.2947	NEUTRAL	NA	2	"FAM114A2,MFAP3"
TCGA.AG.A01W.01A	5	153393504	153813119	19	-0.3131	NEUTRAL	NA	3	"FAM114A2,GALNT10,MFAP3"
TCGA.CK.5914.01A	5	153405907	154297430	75	0.2812	NEUTRAL	NA	9	"CNOT8,FAM114A2,FAXDC2,GALNT10,GEMIN5,HAND1,LARP1,MFAP3,SAP30L"
TCGA.AA.3844	5	153412184	153457785	13	-0.1685	NEUTRAL	NA	2	"FAM114A2,MFAP3"
TCGA.AZ.4684.01A	5	153435555	157216320	213	-0.1393	NEUTRAL	NA	26	"ADAM19,C5orf52,CLINT1,CNOT8,CYFIP2,FAM71B,FAXDC2,FNDC9,GALNT10,GEMIN5,HAND1,HAVCR1,HAVCR2,ITK,KIF4B,LARP1,LSM11,MED7,MFAP3,MRPL22,NIPAL4,SAP30L,SGCD,SOX30,THG1L,TIMD4"
TCGA.AA.3509.01A	5	153435555	158589893	242	-0.0144	NEUTRAL	NA	28	"ADAM19,C5orf52,CLINT1,CNOT8,CYFIP2,EBF1,FAM71B,FAXDC2,FNDC9,GALNT10,GEMIN5,HAND1,HAVCR1,HAVCR2,ITK,KIF4B,LARP1,LSM11,MED7,MFAP3,MRPL22,NIPAL4,RNF145,SAP30L,SGCD,SOX30,THG1L,TIMD4"
TCGA.AA.3982	5	153455935	153641572	57	0.1828	NEUTRAL	NA	1	GALNT10
TCGA.AA.3941	5	153460042	153636187	54	0.2399	NEUTRAL	NA	1	GALNT10
TCGA.AA.3850	5	153460042	154508062	329	0.26195	NEUTRAL	NA	9	"CNOT8,FAXDC2,GALNT10,GEMIN5,HAND1,KIF4B,LARP1,MRPL22,SAP30L"
TCGA.AA.3941	5	153644741	154456912	240	0.2986	NEUTRAL	NA	9	"CNOT8,FAXDC2,GALNT10,GEMIN5,HAND1,KIF4B,LARP1,MRPL22,SAP30L"
TCGA.AA.3982	5	153644741	154593776	295	0.1782	NEUTRAL	NA	9	"CNOT8,FAXDC2,GALNT10,GEMIN5,HAND1,KIF4B,LARP1,MRPL22,SAP30L"
TCGA.NH.A6GA	5	153783752	155576426	576	-0.0287	NEUTRAL	NA	9	"CNOT8,FAXDC2,GALNT10,GEMIN5,HAND1,KIF4B,LARP1,MRPL22,SAP30L"
TCGA.AA.A01Q.01A	5	153796326	154251239	30	-0.2557	NEUTRAL	NA	6	"CNOT8,FAXDC2,GALNT10,HAND1,LARP1,SAP30L"
TCGA.AG.A01W.01A	5	153815613	154163003	12	0.1115	NEUTRAL	NA	3	"HAND1,LARP1,SAP30L"
TCGA.AA.A00F.01A	5	153830649	154251239	26	-0.0029	NEUTRAL	NA	5	"CNOT8,FAXDC2,HAND1,LARP1,SAP30L"
TCGA.AG.A00C.01A	5	153830649	154252052	32	0.2055	NEUTRAL	NA	5	"CNOT8,FAXDC2,HAND1,LARP1,SAP30L"
TCGA.CI.6621	5	154096446	180692832	9245	0.3204	NEUTRAL	NA	172	Too-Many
TCGA.AG.A01W.01A	5	154163904	170165248	591	-0.3717	NEUTRAL	NA	57	"ADAM19,ADRA1B,ATP10B,C1QTNF2,C5orf52,C5orf58,CCNG1,CCNJL,CLINT1,CNOT8,CYFIP2,DOCK2,EBF1,FABP6,FAM196B,FAM71B,FAXDC2,FNDC9,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GEMIN5,HAVCR1,HAVCR2,HMMR,IL12B,ITK,KCNIP1,KCNMB1,KIF4B,LARP1,LCP2,LSM11,MAT2B,MED7,MRPL22,NIPAL4,NUDCD2,PANK3,PTTG1,PWWP2A,RARS,RNF145,SGCD,SLIT3,SLU7,SOX30,SPDL1,TENM2,THG1L,TIMD4,TTC1,UBLCP1,WWC1,ZBED8"
TCGA.AA.A00N.01A	5	154179110	154217616	15	0.2922	NEUTRAL	NA	2	"FAXDC2,LARP1"
TCGA.AG.3909.01A	5	154182802	156469569	74	0.1518	NEUTRAL	NA	9	"CNOT8,FAXDC2,GEMIN5,HAVCR1,KIF4B,LARP1,MRPL22,SGCD,TIMD4"
TCGA.AG.4009.01A	5	154199634	156649824	87	0.0183	NEUTRAL	NA	12	"CNOT8,FAM71B,FAXDC2,GEMIN5,HAVCR1,HAVCR2,ITK,KIF4B,MED7,MRPL22,SGCD,TIMD4"
TCGA.AA.A00F.01A	5	154252052	154296521	18	-0.3274	NEUTRAL	NA	2	"CNOT8,GEMIN5"
TCGA.AA.A01Q.01A	5	154252052	156816147	85	0.2798	NEUTRAL	NA	13	"CNOT8,CYFIP2,FAM71B,FNDC9,GEMIN5,HAVCR1,HAVCR2,ITK,KIF4B,MED7,MRPL22,SGCD,TIMD4"
TCGA.AG.A00C.01A	5	154254840	156964892	141	-0.1807	NEUTRAL	NA	15	"ADAM19,CNOT8,CYFIP2,FAM71B,FNDC9,GEMIN5,HAVCR1,HAVCR2,ITK,KIF4B,MED7,MRPL22,NIPAL4,SGCD,TIMD4"
TCGA.AA.A00F.01A	5	154297430	154393381	18	0.0141	NEUTRAL	NA	3	"GEMIN5,KIF4B,MRPL22"
TCGA.AA.3941	5	154476532	154508062	24	0.176	NEUTRAL	NA	0	None
TCGA.AA.3941	5	154508164	154686637	58	-0.1195	NEUTRAL	NA	0	None
TCGA.AA.3850	5	154508164	154851051	140	-0.39375	NEUTRAL	NA	0	None
TCGA.AA.3982	5	154595485	156260120	602	-0.3554	NEUTRAL	NA	1	SGCD
TCGA.AG.3591	5	154609876	180692832	9120	0.146	NEUTRAL	NA	166	Too-Many
TCGA.AA.3844	5	154689634	156317796	593	0.1441	NEUTRAL	NA	1	SGCD
TCGA.AA.3941	5	154878177	155987522	385	-0.4609	NEUTRAL	NA	1	SGCD
TCGA.AA.3850	5	154878177	156310287	484	-0.35935	NEUTRAL	NA	1	SGCD
TCGA.DY.A1DC	5	154887297	163287360	2916	-0.0138	NEUTRAL	NA	38	"ADAM19,ADRA1B,ATP10B,C1QTNF2,C5orf52,CCNG1,CCNJL,CLINT1,CYFIP2,EBF1,FABP6,FAM71B,FNDC9,GABRA1,GABRA6,GABRB2,GABRG2,HAVCR1,HAVCR2,HMMR,IL12B,ITK,LSM11,MAT2B,MED7,NIPAL4,NUDCD2,PTTG1,PWWP2A,RNF145,SGCD,SLU7,SOX30,THG1L,TIMD4,TTC1,UBLCP1,ZBED8"
TCGA.CM.6163	5	154916461	174102229	7199	0.1362	NEUTRAL	NA	76	"ADAM19,ADRA1B,ATP10B,ATP6V0E1,BNIP1,BOD1,C1QTNF2,C5orf47,C5orf52,C5orf58,CCNG1,CCNJL,CLINT1,CPEB4,CREBRF,CYFIP2,DOCK2,DUSP1,EBF1,EFCAB9,ERGIC1,FABP6,FAM196B,FAM71B,FBXW11,FGF18,FNDC9,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GABRP,HAVCR1,HAVCR2,HMMR,HMP19,IL12B,ITK,KCNIP1,KCNMB1,LCP2,LOC101928093,LSM11,MAT2B,MED7,NEURL1B,NIPAL4,NKX2-5,NPM1,NUDCD2,PANK3,PTTG1,PWWP2A,RANBP17,RARS,RNF145,RPL26L1,SGCD,SH3PXD2B,SLIT3,SLU7,SMIM23,SOX30,SPDL1,STC2,STK10,TENM2,THG1L,TIMD4,TLX3,TTC1,UBLCP1,UBTD2,WWC1,ZBED8"
TCGA.NH.A6GA	5	155597453	180032683	8584	-0.0231	NEUTRAL	NA	154	Too-Many
TCGA.AF.A56L	5	155597453	180692832	8757	0.1051	NEUTRAL	NA	166	Too-Many
TCGA.CK.5914.01A	5	155756512	156349061	11	0.2341	NEUTRAL	NA	2	"SGCD,TIMD4"
TCGA.AA.A010.01A	5	155771447	156464221	19	0.0422	NEUTRAL	NA	3	"HAVCR1,SGCD,TIMD4"
TCGA.AA.3941	5	155987897	160492380	1664	0.0014	NEUTRAL	NA	30	"ADAM19,ADRA1B,ATP10B,C1QTNF2,C5orf52,CCNJL,CLINT1,CYFIP2,EBF1,FABP6,FAM71B,FNDC9,HAVCR1,HAVCR2,IL12B,ITK,LSM11,MED7,NIPAL4,PTTG1,PWWP2A,RNF145,SGCD,SLU7,SOX30,THG1L,TIMD4,TTC1,UBLCP1,ZBED8"
TCGA.G4.6307	5	156150743	180692832	8550	-0.426	NEUTRAL	NA	166	Too-Many
TCGA.AA.3982	5	156261736	156623903	112	0.206	NEUTRAL	NA	6	"FAM71B,HAVCR1,HAVCR2,ITK,MED7,TIMD4"
TCGA.D5.7000	5	156291604	158415352	790	0.3476	NEUTRAL	NA	16	"ADAM19,C5orf52,CLINT1,CYFIP2,EBF1,FAM71B,FNDC9,HAVCR1,HAVCR2,ITK,LSM11,MED7,NIPAL4,SOX30,THG1L,TIMD4"
TCGA.AA.3850	5	156311623	156604334	87	0.36565	NEUTRAL	NA	5	"FAM71B,HAVCR1,HAVCR2,MED7,TIMD4"
TCGA.AA.A00F.01A	5	156346422	157232827	79	-0.2781	NEUTRAL	NA	15	"ADAM19,C5orf52,CLINT1,CYFIP2,FAM71B,FNDC9,HAVCR1,HAVCR2,ITK,LSM11,MED7,NIPAL4,SOX30,THG1L,TIMD4"
TCGA.AA.A00N.01A	5	156347413	156469569	12	-0.0668	NEUTRAL	NA	2	"HAVCR1,TIMD4"
TCGA.CK.5914.01A	5	156353217	156484835	14	-0.1277	NEUTRAL	NA	2	"HAVCR1,TIMD4"
TCGA.AG.A020	5	156405783	180692832	8474	-0.0454	NEUTRAL	NA	164	Too-Many
TCGA.A6.6653	5	156475397	156518087	14	-0.474	NEUTRAL	NA	2	"HAVCR1,HAVCR2"
TCGA.AG.3611.01A	5	156476000	156565734	9	0.1141	NEUTRAL	NA	3	"HAVCR1,HAVCR2,MED7"
TCGA.A6.6653	5	156518667	164886042	2811	-0.0041	NEUTRAL	NA	35	"ADAM19,ADRA1B,ATP10B,C1QTNF2,C5orf52,CCNG1,CCNJL,CLINT1,CYFIP2,EBF1,FABP6,FAM71B,FNDC9,GABRA1,GABRA6,GABRB2,GABRG2,HAVCR2,HMMR,IL12B,ITK,LSM11,MAT2B,MED7,NIPAL4,NUDCD2,PTTG1,PWWP2A,RNF145,SLU7,SOX30,THG1L,TTC1,UBLCP1,ZBED8"
TCGA.AG.3611.01A	5	156589416	156644801	7	-0.2678	NEUTRAL	NA	2	"FAM71B,ITK"
TCGA.AA.A010.01A	5	156589416	156649824	8	0.0814	NEUTRAL	NA	2	"FAM71B,ITK"
TCGA.AA.3850	5	156608999	156635046	17	-0.28565	NEUTRAL	NA	1	ITK
TCGA.AA.3844	5	156624318	156627356	9	0.0459	NEUTRAL	NA	1	ITK
TCGA.AA.3972	5	156624318	156627356	9	-0.3261	NEUTRAL	NA	1	ITK
TCGA.AA.3982	5	156624318	156627356	9	-0.5004	NEUTRAL	NA	1	ITK
TCGA.AA.3982	5	156635046	157505114	317	0.2249	NEUTRAL	NA	10	"ADAM19,C5orf52,CLINT1,CYFIP2,FNDC9,ITK,LSM11,NIPAL4,SOX30,THG1L"
TCGA.AA.3972	5	156635046	180692832	8400	0.0868	NEUTRAL	NA	160	Too-Many
TCGA.AG.4009.01A	5	156655252	156721731	13	-0.4139	NEUTRAL	NA	2	"CYFIP2,ITK"
TCGA.AG.3611.01A	5	156721731	158126044	46	-0.2382	NEUTRAL	NA	10	"ADAM19,C5orf52,CLINT1,CYFIP2,EBF1,FNDC9,LSM11,NIPAL4,SOX30,THG1L"
TCGA.AG.4009.01A	5	156723626	156788426	23	0.0531	NEUTRAL	NA	2	"CYFIP2,FNDC9"
TCGA.AG.4009.01A	5	156809546	156819800	5	-0.3691	NEUTRAL	NA	1	CYFIP2
TCGA.AA.A01Q.01A	5	156819800	167858210	220	0.047	NEUTRAL	NA	32	"ADAM19,ADRA1B,ATP10B,C1QTNF2,C5orf52,CCNG1,CCNJL,CLINT1,CYFIP2,EBF1,FABP6,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,IL12B,LSM11,MAT2B,NIPAL4,NUDCD2,PTTG1,PWWP2A,RNF145,SLU7,SOX30,TENM2,THG1L,TTC1,UBLCP1,WWC1,ZBED8"
TCGA.CK.5914.01A	5	156890050	156917290	10	-0.4003	NEUTRAL	NA	2	"ADAM19,NIPAL4"
TCGA.AG.4009.01A	5	156890050	157078148	31	0.1525	NEUTRAL	NA	3	"ADAM19,NIPAL4,SOX30"
TCGA.AA.3980.01A	5	156936257	180686963	1259	-0.1782	NEUTRAL	NA	156	Too-Many
TCGA.AG.A00C.01A	5	156991325	157180977	15	0.3046	NEUTRAL	NA	5	"ADAM19,C5orf52,LSM11,SOX30,THG1L"
TCGA.AG.3909.01A	5	156991325	157181870	16	-0.4424	NEUTRAL	NA	5	"ADAM19,C5orf52,LSM11,SOX30,THG1L"
TCGA.AG.3891.01A	5	157180977	167895890	238	-0.162	NEUTRAL	NA	26	"ADRA1B,ATP10B,C1QTNF2,CCNG1,CCNJL,CLINT1,EBF1,FABP6,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,IL12B,LSM11,MAT2B,NUDCD2,PTTG1,PWWP2A,RNF145,SLU7,TENM2,TTC1,UBLCP1,WWC1,ZBED8"
TCGA.AG.A00C.01A	5	157181870	158250137	22	-0.2149	NEUTRAL	NA	3	"CLINT1,EBF1,LSM11"
TCGA.AA.A010.01A	5	157214613	158603599	35	0.1178	NEUTRAL	NA	3	"CLINT1,EBF1,RNF145"
TCGA.AG.4009.01A	5	157214613	158603599	35	-0.15	NEUTRAL	NA	3	"CLINT1,EBF1,RNF145"
TCGA.AG.3906.01A	5	157214613	167895890	235	-0.0494	NEUTRAL	NA	25	"ADRA1B,ATP10B,C1QTNF2,CCNG1,CCNJL,CLINT1,EBF1,FABP6,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,IL12B,MAT2B,NUDCD2,PTTG1,PWWP2A,RNF145,SLU7,TENM2,TTC1,UBLCP1,WWC1,ZBED8"
TCGA.AZ.4684.01A	5	157218711	159343862	52	0.2245	NEUTRAL	NA	6	"ADRA1B,CLINT1,EBF1,IL12B,RNF145,UBLCP1"
TCGA.AA.3850	5	157237260	157485742	87	0.36635	NEUTRAL	NA	1	CLINT1
TCGA.AA.3850	5	157489846	159316986	707	-0.17425	NEUTRAL	NA	4	"EBF1,IL12B,RNF145,UBLCP1"
TCGA.AA.3982	5	157508113	157635228	73	-0.0497	NEUTRAL	NA	0	None
TCGA.AA.3844	5	157508113	157679940	87	0.23	NEUTRAL	NA	0	None
TCGA.AA.3982	5	157647315	157679940	8	-0.2062	NEUTRAL	NA	0	None
TCGA.AA.3844	5	157697753	159316986	610	0.2814	NEUTRAL	NA	4	"EBF1,IL12B,RNF145,UBLCP1"
TCGA.AA.3982	5	157697753	159410539	646	-0.1131	NEUTRAL	NA	5	"ADRA1B,EBF1,IL12B,RNF145,UBLCP1"
TCGA.D5.6931	5	157901745	180692832	7900	-0.0248	NEUTRAL	NA	150	Too-Many
TCGA.AG.A00C.01A	5	158266977	159661770	51	0.0276	NEUTRAL	NA	8	"ADRA1B,EBF1,FABP6,IL12B,PWWP2A,RNF145,TTC1,UBLCP1"
TCGA.D5.7000	5	158423744	180692832	7683	-0.0275	NEUTRAL	NA	150	Too-Many
TCGA.AG.3909.01A	5	158500362	159398899	34	-0.4913	NEUTRAL	NA	5	"ADRA1B,EBF1,IL12B,RNF145,UBLCP1"
TCGA.AA.A00F.01A	5	158500362	159519357	41	-0.121	NEUTRAL	NA	7	"ADRA1B,EBF1,IL12B,PWWP2A,RNF145,TTC1,UBLCP1"
TCGA.AG.3611.01A	5	158585666	175837180	506	-0.3718	NEUTRAL	NA	72	"ADRA1B,ARL10,ATP10B,ATP6V0E1,BNIP1,BOD1,C1QTNF2,C5orf47,C5orf58,CCNG1,CCNJL,CLTB,CPEB4,CPLX2,CREBRF,DOCK2,DRD1,DUSP1,EFCAB9,ERGIC1,FABP6,FAM153B,FAM196B,FBXW11,FGF18,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GABRP,HIGD2A,HMMR,HMP19,HRH2,IL12B,KCNIP1,KCNMB1,KIAA1191,LCP2,LOC101928093,MAT2B,MSX2,NEURL1B,NKX2-5,NOP16,NPM1,NUDCD2,PANK3,PTTG1,PWWP2A,RANBP17,RARS,RNF145,RPL26L1,SFXN1,SH3PXD2B,SIMC1,SLIT3,SLU7,SMIM23,SPDL1,STC2,STK10,TENM2,THOC3,TLX3,TTC1,UBLCP1,UBTD2,WWC1,ZBED8"
TCGA.AA.3861.01A	5	158630395	175305660	548	-0.0753	NEUTRAL	NA	64	"ADRA1B,ATP10B,ATP6V0E1,BNIP1,BOD1,C1QTNF2,C5orf47,C5orf58,CCNG1,CCNJL,CPEB4,CPLX2,CREBRF,DOCK2,DRD1,DUSP1,EFCAB9,ERGIC1,FABP6,FAM196B,FBXW11,FGF18,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GABRP,HMMR,HMP19,HRH2,IL12B,KCNIP1,KCNMB1,LCP2,LOC101928093,MAT2B,MSX2,NEURL1B,NKX2-5,NPM1,NUDCD2,PANK3,PTTG1,PWWP2A,RANBP17,RARS,RNF145,RPL26L1,SFXN1,SH3PXD2B,SLIT3,SLU7,SMIM23,SPDL1,STC2,STK10,TENM2,TLX3,TTC1,UBLCP1,UBTD2,WWC1,ZBED8"
TCGA.AA.3862.01A	5	158630395	175305660	551	0.1024	NEUTRAL	NA	64	"ADRA1B,ATP10B,ATP6V0E1,BNIP1,BOD1,C1QTNF2,C5orf47,C5orf58,CCNG1,CCNJL,CPEB4,CPLX2,CREBRF,DOCK2,DRD1,DUSP1,EFCAB9,ERGIC1,FABP6,FAM196B,FBXW11,FGF18,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GABRP,HMMR,HMP19,HRH2,IL12B,KCNIP1,KCNMB1,LCP2,LOC101928093,MAT2B,MSX2,NEURL1B,NKX2-5,NPM1,NUDCD2,PANK3,PTTG1,PWWP2A,RANBP17,RARS,RNF145,RPL26L1,SFXN1,SH3PXD2B,SLIT3,SLU7,SMIM23,SPDL1,STC2,STK10,TENM2,TLX3,TTC1,UBLCP1,UBTD2,WWC1,ZBED8"
TCGA.A6.3808.01A	5	158630395	175306869	551	0.3202	NEUTRAL	NA	64	"ADRA1B,ATP10B,ATP6V0E1,BNIP1,BOD1,C1QTNF2,C5orf47,C5orf58,CCNG1,CCNJL,CPEB4,CPLX2,CREBRF,DOCK2,DRD1,DUSP1,EFCAB9,ERGIC1,FABP6,FAM196B,FBXW11,FGF18,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GABRP,HMMR,HMP19,HRH2,IL12B,KCNIP1,KCNMB1,LCP2,LOC101928093,MAT2B,MSX2,NEURL1B,NKX2-5,NPM1,NUDCD2,PANK3,PTTG1,PWWP2A,RANBP17,RARS,RNF145,RPL26L1,SFXN1,SH3PXD2B,SLIT3,SLU7,SMIM23,SPDL1,STC2,STK10,TENM2,TLX3,TTC1,UBLCP1,UBTD2,WWC1,ZBED8"
TCGA.AG.4009.01A	5	158695877	167932979	204	0.0143	NEUTRAL	NA	23	"ADRA1B,ATP10B,C1QTNF2,CCNG1,CCNJL,FABP6,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,IL12B,MAT2B,NUDCD2,PTTG1,PWWP2A,RARS,SLU7,TENM2,TTC1,UBLCP1,WWC1,ZBED8"
TCGA.AA.3509.01A	5	158753650	159781738	27	-0.1507	NEUTRAL	NA	7	"ADRA1B,C1QTNF2,CCNJL,FABP6,IL12B,PWWP2A,TTC1"
TCGA.DM.A1HB	5	158830818	180692832	7402	0.0079	NEUTRAL	NA	146	Too-Many
TCGA.AA.3664	5	159301585	168371811	3140	-0.0226	NEUTRAL	NA	23	"ADRA1B,ATP10B,C1QTNF2,CCNG1,CCNJL,FABP6,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,MAT2B,NUDCD2,PANK3,PTTG1,PWWP2A,RARS,SLIT3,SLU7,TENM2,TTC1,WWC1,ZBED8"
TCGA.AA.3850	5	159317302	160188913	305	0.22525	NEUTRAL	NA	10	"ADRA1B,ATP10B,C1QTNF2,CCNJL,FABP6,PTTG1,PWWP2A,SLU7,TTC1,ZBED8"
TCGA.AA.A00N.01A	5	159398899	159640688	14	0.1054	NEUTRAL	NA	4	"ADRA1B,FABP6,PWWP2A,TTC1"
TCGA.AZ.4684.01A	5	159398899	159831771	31	-0.2448	NEUTRAL	NA	8	"ADRA1B,C1QTNF2,CCNJL,FABP6,PWWP2A,SLU7,TTC1,ZBED8"
TCGA.AA.3982	5	159412614	159799561	98	0.3	NEUTRAL	NA	5	"C1QTNF2,CCNJL,FABP6,PWWP2A,TTC1"
TCGA.AG.3909.01A	5	159437496	161580072	104	0.3715	NEUTRAL	NA	13	"ATP10B,C1QTNF2,CCNJL,FABP6,GABRA1,GABRA6,GABRB2,GABRG2,PTTG1,PWWP2A,SLU7,TTC1,ZBED8"
TCGA.CK.5914.01A	5	159462091	159797481	24	0.3557	NEUTRAL	NA	5	"C1QTNF2,CCNJL,FABP6,PWWP2A,TTC1"
TCGA.AA.A00F.01A	5	159656491	159776168	6	-0.4996	NEUTRAL	NA	3	"C1QTNF2,CCNJL,FABP6"
TCGA.AG.A00C.01A	5	159665552	161178402	69	-0.2727	NEUTRAL	NA	9	"ATP10B,C1QTNF2,CCNJL,FABP6,GABRA6,GABRB2,PTTG1,SLU7,ZBED8"
TCGA.BM.6198	5	159687976	159690030	3	-0.39555	NEUTRAL	NA	1	CCNJL
TCGA.AA.A00F.01A	5	159781738	161113879	37	-0.2555	NEUTRAL	NA	7	"ATP10B,C1QTNF2,GABRA6,GABRB2,PTTG1,SLU7,ZBED8"
TCGA.AA.3982	5	159803034	166918124	2315	-0.3091	NEUTRAL	NA	13	"ATP10B,CCNG1,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,MAT2B,NUDCD2,PTTG1,SLU7,TENM2,ZBED8"
TCGA.AA.3844	5	159979316	167521080	2522	0.1254	NEUTRAL	NA	10	"ATP10B,CCNG1,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,MAT2B,NUDCD2,TENM2"
TCGA.AA.3850	5	160196090	160622724	195	-0.41135	NEUTRAL	NA	1	ATP10B
TCGA.CM.5341	5	160537024	180692832	6930	0.0138	NEUTRAL	NA	136	Too-Many
TCGA.CK.5914.01A	5	160753326	161128517	15	-0.4374	NEUTRAL	NA	2	"GABRA6,GABRB2"
TCGA.F4.6461	5	161305708	164558172	974	-0.4283	NEUTRAL	NA	6	"CCNG1,GABRA1,GABRG2,HMMR,MAT2B,NUDCD2"
TCGA.AA.3947	5	161832336	180692832	6576	-0.0135	NEUTRAL	NA	132	Too-Many
TCGA.CM.6677	5	162023390	165503481	1089	-0.0279	NEUTRAL	NA	4	"CCNG1,HMMR,MAT2B,NUDCD2"
TCGA.D5.6932	5	162357694	162667148	100	-0.5057	NEUTRAL	NA	0	None
TCGA.AA.3941	5	162389157	166918124	1479	-0.4	NEUTRAL	NA	5	"CCNG1,HMMR,MAT2B,NUDCD2,TENM2"
TCGA.AA.3850	5	162389157	167522264	1767	-0.36805	NEUTRAL	NA	5	"CCNG1,HMMR,MAT2B,NUDCD2,TENM2"
TCGA.D5.6932	5	162699472	162753586	19	-0.4644	NEUTRAL	NA	0	None
TCGA.D5.6932	5	162759553	180692832	6281	0.043	NEUTRAL	NA	132	Too-Many
TCGA.AG.A00C.01A	5	162866224	162905653	18	-0.2488	NEUTRAL	NA	3	"CCNG1,HMMR,NUDCD2"
TCGA.AA.A00N.01A	5	162866224	162932623	25	-0.2837	NEUTRAL	NA	4	"CCNG1,HMMR,MAT2B,NUDCD2"
TCGA.AA.A00F.01A	5	162866224	167798379	41	-0.1831	NEUTRAL	NA	6	"CCNG1,HMMR,MAT2B,NUDCD2,TENM2,WWC1"
TCGA.AA.A00D.01A	5	162866224	167992967	84	-0.2957	NEUTRAL	NA	8	"CCNG1,HMMR,MAT2B,NUDCD2,PANK3,RARS,TENM2,WWC1"
TCGA.AA.A00L.01A	5	162866224	179004008	711	-0.3822	NEUTRAL	NA	103	Too-Many
TCGA.AG.3909.01A	5	162900126	162918048	9	-0.4191	NEUTRAL	NA	1	HMMR
TCGA.AG.A00C.01A	5	162909656	162945152	12	0.141	NEUTRAL	NA	2	"HMMR,MAT2B"
TCGA.AZ.4684.01A	5	162930319	167626897	25	-0.1652	NEUTRAL	NA	2	"MAT2B,TENM2"
TCGA.AA.3509.01A	5	162930319	170322985	231	-0.0537	NEUTRAL	NA	16	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,MAT2B,PANK3,RANBP17,RARS,SLIT3,SPDL1,TENM2,WWC1"
TCGA.F4.6808	5	162969755	166514263	1150	0.0518	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	163297761	163797229	135	0.013	NEUTRAL	NA	0	None
TCGA.BM.6198	5	163805636	168398540	1687	0.07425	NEUTRAL	NA	5	"PANK3,RARS,SLIT3,TENM2,WWC1"
TCGA.DY.A1DC	5	163824957	164072019	66	-0.0275	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	164081401	165060875	272	0.0287	NEUTRAL	NA	0	None
TCGA.D5.6920	5	164389084	164764507	128	-0.3034	NEUTRAL	NA	0	None
TCGA.F4.6461	5	164561179	180692832	5699	-0.0228	NEUTRAL	NA	128	Too-Many
TCGA.D5.6920	5	164768747	180692832	5652	-0.0121	NEUTRAL	NA	128	Too-Many
TCGA.F4.6460	5	164966528	166333886	488	-0.4169	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	165076613	165675299	198	0.0299	NEUTRAL	NA	0	None
TCGA.A6.6653	5	165107621	168139238	1146	-0.0397	NEUTRAL	NA	5	"PANK3,RARS,SLIT3,TENM2,WWC1"
TCGA.CM.6677	5	165504105	166934603	503	-0.338	NEUTRAL	NA	1	TENM2
TCGA.D5.5539	5	165650502	166310088	260	-0.3747	NEUTRAL	NA	0	None
TCGA.DY.A1DC	5	165703811	180692832	5349	-0.0335	NEUTRAL	NA	128	Too-Many
TCGA.D5.5539	5	166331560	180214852	4989	0.2045	NEUTRAL	NA	117	Too-Many
TCGA.F4.6460	5	166336282	180692832	5120	-0.0636	NEUTRAL	NA	128	Too-Many
TCGA.5M.AAT5	5	166662942	167743999	485	-0.4723	NEUTRAL	NA	2	"TENM2,WWC1"
TCGA.CM.6170	5	166691258	166823637	44	0.0961	NEUTRAL	NA	1	TENM2
TCGA.AA.3811	5	166921015	167276499	150	-0.5137	NEUTRAL	NA	1	TENM2
TCGA.AA.3982	5	166921015	167496862	273	-0.1805	NEUTRAL	NA	1	TENM2
TCGA.AA.3941	5	166921015	167521080	282	-0.3031	NEUTRAL	NA	1	TENM2
TCGA.CM.6677	5	166941082	180692832	4919	-0.0121	NEUTRAL	NA	128	Too-Many
TCGA.CM.6172	5	166987673	180692832	4913	-0.0578	NEUTRAL	NA	128	Too-Many
TCGA.CM.6170	5	167090533	167200706	59	0.0685	NEUTRAL	NA	1	TENM2
TCGA.CM.5344	5	167131518	167641066	272	0.019	NEUTRAL	NA	1	TENM2
TCGA.AA.3811	5	167278329	180692832	4771	-0.0435	NEUTRAL	NA	128	Too-Many
TCGA.A6.2672	5	167366814	180692832	4728	-0.3499	NEUTRAL	NA	128	Too-Many
TCGA.A6.5661	5	167366814	180692832	4731	-0.475	NEUTRAL	NA	128	Too-Many
TCGA.A6.5665	5	167366814	180692832	4735	-0.3611	NEUTRAL	NA	128	Too-Many
TCGA.AG.A00C.01A	5	167379544	167921508	50	-0.2932	NEUTRAL	NA	3	"RARS,TENM2,WWC1"
TCGA.CM.6170	5	167455000	168901739	709	0.0034	NEUTRAL	NA	5	"PANK3,RARS,SLIT3,TENM2,WWC1"
TCGA.AA.3982	5	167512001	167563584	35	0.1513	NEUTRAL	NA	1	TENM2
TCGA.AA.3850	5	167522970	180692832	4647	0.27305	NEUTRAL	NA	128	Too-Many
TCGA.AA.3844	5	167555815	167574937	14	-0.0186	NEUTRAL	NA	1	TENM2
TCGA.AA.3941	5	167557558	167569873	9	-0.3245	NEUTRAL	NA	1	TENM2
TCGA.AA.3982	5	167574791	167636981	32	0.1551	NEUTRAL	NA	1	TENM2
TCGA.AA.3941	5	167575627	167634224	29	0.2292	NEUTRAL	NA	1	TENM2
TCGA.AA.3844	5	167637011	167639666	5	-0.2595	NEUTRAL	NA	1	TENM2
TCGA.AA.3982	5	167637011	167668889	13	-0.2354	NEUTRAL	NA	1	TENM2
TCGA.AA.3941	5	167639666	168363982	314	0.3581	NEUTRAL	NA	5	"PANK3,RARS,SLIT3,TENM2,WWC1"
TCGA.AA.3982	5	167672104	170316915	1322	0.106	NEUTRAL	NA	15	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,PANK3,RANBP17,RARS,SLIT3,SPDL1,TENM2,WWC1"
TCGA.5M.AAT5	5	167748187	175329032	3311	0.1602	NEUTRAL	NA	42	"ATP6V0E1,BNIP1,BOD1,C5orf47,C5orf58,CPEB4,CPLX2,CREBRF,DOCK2,DRD1,DUSP1,EFCAB9,ERGIC1,FAM196B,FBXW11,FGF18,FOXI1,GABRP,HMP19,HRH2,KCNIP1,KCNMB1,LCP2,LOC101928093,MSX2,NEURL1B,NKX2-5,NPM1,PANK3,RANBP17,RARS,RPL26L1,SFXN1,SH3PXD2B,SLIT3,SMIM23,SPDL1,STC2,STK10,TLX3,UBTD2,WWC1"
TCGA.AA.A00F.01A	5	167812169	167913430	22	-0.4963	NEUTRAL	NA	1	WWC1
TCGA.AA.A00Q.01A	5	167868635	167987843	26	-0.1867	NEUTRAL	NA	3	"PANK3,RARS,WWC1"
TCGA.AG.3909.01A	5	167895890	167946049	15	0.3666	NEUTRAL	NA	2	"RARS,WWC1"
TCGA.AG.3891.01A	5	167915570	167984501	15	0.2614	NEUTRAL	NA	2	"PANK3,RARS"
TCGA.AA.A00N.01A	5	167915570	168006184	22	-0.354	NEUTRAL	NA	2	"PANK3,RARS"
TCGA.AA.A00F.01A	5	167915570	168100150	26	-0.1519	NEUTRAL	NA	3	"PANK3,RARS,SLIT3"
TCGA.AA.A01Q.01A	5	167915570	168100150	26	0.1435	NEUTRAL	NA	3	"PANK3,RARS,SLIT3"
TCGA.CK.5914.01A	5	167915570	168100150	26	-0.2372	NEUTRAL	NA	3	"PANK3,RARS,SLIT3"
TCGA.AG.3906.01A	5	167915570	168134934	32	0.3182	NEUTRAL	NA	3	"PANK3,RARS,SLIT3"
TCGA.AG.A00C.01A	5	167922283	167995641	17	0.2772	NEUTRAL	NA	2	"PANK3,RARS"
TCGA.AA.3939.01A	5	167932979	175394963	344	0.1484	NEUTRAL	NA	42	"ATP6V0E1,BNIP1,BOD1,C5orf47,C5orf58,CPEB4,CPLX2,CREBRF,DOCK2,DRD1,DUSP1,EFCAB9,ERGIC1,FAM196B,FBXW11,FGF18,FOXI1,GABRP,HMP19,HRH2,KCNIP1,KCNMB1,LCP2,LOC101928093,MSX2,NEURL1B,NKX2-5,NPM1,PANK3,RANBP17,RARS,RPL26L1,SFXN1,SH3PXD2B,SLIT3,SMIM23,SPDL1,STC2,STK10,THOC3,TLX3,UBTD2"
TCGA.AA.A010.01A	5	167984501	167995641	7	-0.4915	NEUTRAL	NA	1	PANK3
TCGA.AG.3909.01A	5	167984501	168100150	11	-0.2833	NEUTRAL	NA	2	"PANK3,SLIT3"
TCGA.AG.3891.01A	5	167986005	170814884	175	-0.1493	NEUTRAL	NA	14	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,NPM1,PANK3,RANBP17,SLIT3,SPDL1,TLX3"
TCGA.AG.A00C.01A	5	168093458	168139224	13	-0.3163	NEUTRAL	NA	1	SLIT3
TCGA.AG.4009.01A	5	168093458	170238933	139	0.0605	NEUTRAL	NA	10	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,SLIT3,SPDL1"
TCGA.AA.A00F.01A	5	168110939	170648706	138	-0.4478	NEUTRAL	NA	11	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,RANBP17,SLIT3,SPDL1"
TCGA.AG.3906.01A	5	168139224	170814884	158	-0.0316	NEUTRAL	NA	13	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,NPM1,RANBP17,SLIT3,SPDL1,TLX3"
TCGA.A6.6653	5	168175039	169354080	618	-0.0563	NEUTRAL	NA	4	"DOCK2,FAM196B,SLIT3,SPDL1"
TCGA.AG.A00C.01A	5	168179920	170640596	141	-0.2377	NEUTRAL	NA	11	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,RANBP17,SLIT3,SPDL1"
TCGA.AA.A01Q.01A	5	168187808	170818655	135	0.0989	NEUTRAL	NA	13	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,NPM1,RANBP17,SLIT3,SPDL1,TLX3"
TCGA.A6.3810.01A	5	168201209	170814884	151	0.2443	NEUTRAL	NA	13	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,NPM1,RANBP17,SLIT3,SPDL1,TLX3"
TCGA.AA.3941	5	168364320	168975430	306	0.0376	NEUTRAL	NA	1	SLIT3
TCGA.AA.3860	5	168367890	169436127	544	-0.4085	NEUTRAL	NA	4	"DOCK2,FAM196B,SLIT3,SPDL1"
TCGA.BM.6198	5	168407751	171024599	1133	-0.51085	NEUTRAL	NA	14	"C5orf58,DOCK2,FAM196B,FGF18,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,NPM1,RANBP17,SLIT3,SPDL1,TLX3"
TCGA.AZ.4684.01A	5	168620417	170322985	116	-0.1243	NEUTRAL	NA	11	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,RANBP17,SLIT3,SPDL1"
TCGA.F4.6808	5	168959290	180692832	3960	-0.0168	NEUTRAL	NA	123	Too-Many
TCGA.AA.3941	5	168986470	169639057	376	0.0245	NEUTRAL	NA	4	"DOCK2,FAM196B,FOXI1,SPDL1"
TCGA.CK.5914.01A	5	169015426	169031024	9	-0.2929	NEUTRAL	NA	1	SPDL1
TCGA.AA.A010.01A	5	169020341	169509765	59	-0.0634	NEUTRAL	NA	3	"DOCK2,FAM196B,SPDL1"
TCGA.AG.A01L.01A	5	169309505	175956251	286	0.1742	NEUTRAL	NA	47	"ARL10,ATP6V0E1,BNIP1,BOD1,C5orf47,C5orf58,CLTB,CPEB4,CPLX2,CREBRF,DOCK2,DRD1,DUSP1,EFCAB9,ERGIC1,FAF2,FAM153B,FAM196B,FBXW11,FGF18,FOXI1,GABRP,HIGD2A,HMP19,HRH2,KCNIP1,KCNMB1,KIAA1191,LCP2,LOC101928093,MSX2,NEURL1B,NKX2-5,NOP16,NPM1,RANBP17,RNF44,RPL26L1,SFXN1,SH3PXD2B,SIMC1,SMIM23,STC2,STK10,THOC3,TLX3,UBTD2"
TCGA.A6.6653	5	169400675	180692832	3736	-0.0338	NEUTRAL	NA	122	Too-Many
TCGA.AA.3860	5	169436952	172934897	1363	-0.012	NEUTRAL	NA	27	"ATP6V0E1,BNIP1,C5orf58,CREBRF,DOCK2,DUSP1,EFCAB9,ERGIC1,FBXW11,FGF18,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,LOC101928093,NEURL1B,NKX2-5,NPM1,RANBP17,RPL26L1,SH3PXD2B,SMIM23,STC2,STK10,TLX3,UBTD2"
TCGA.AA.A00N.01A	5	169532922	169688026	13	-0.194	NEUTRAL	NA	3	"C5orf58,FOXI1,LCP2"
TCGA.AG.3909.01A	5	169532922	169714930	20	-0.2999	NEUTRAL	NA	3	"C5orf58,FOXI1,LCP2"
TCGA.CK.5914.01A	5	169535006	169702740	18	-0.5036	NEUTRAL	NA	3	"C5orf58,FOXI1,LCP2"
TCGA.AA.3941	5	169644844	170313643	327	0.1852	NEUTRAL	NA	6	"C5orf58,GABRP,KCNIP1,KCNMB1,LCP2,RANBP17"
TCGA.CM.6170	5	169649829	180692832	3568	-0.0038	NEUTRAL	NA	119	Too-Many
TCGA.AU.3779	5	169724323	169828325	70	-0.5038	NEUTRAL	NA	3	"KCNIP1,KCNMB1,LCP2"
TCGA.AU.3779	5	169828450	180692832	3473	-0.0732	NEUTRAL	NA	116	Too-Many
TCGA.G4.6625	5	170059226	180692832	3343	-0.1802	NEUTRAL	NA	116	Too-Many
TCGA.AA.A010.01A	5	170139774	170816993	48	0.0735	NEUTRAL	NA	5	"GABRP,KCNIP1,NPM1,RANBP17,TLX3"
TCGA.AG.3909.01A	5	170149669	170814884	43	0.2317	NEUTRAL	NA	5	"GABRP,KCNIP1,NPM1,RANBP17,TLX3"
TCGA.CK.5914.01A	5	170159756	170814884	42	0.0669	NEUTRAL	NA	5	"GABRP,KCNIP1,NPM1,RANBP17,TLX3"
TCGA.AG.A01W.01A	5	170168161	170573194	22	0.0325	NEUTRAL	NA	2	"GABRP,RANBP17"
TCGA.AG.4009.01A	5	170305124	170322985	4	-0.3997	NEUTRAL	NA	1	RANBP17
TCGA.AA.3941	5	170316915	170615289	35	-0.459	NEUTRAL	NA	1	RANBP17
TCGA.AA.3844	5	170318865	170692233	47	0.1945	NEUTRAL	NA	1	RANBP17
TCGA.AG.4009.01A	5	170336628	170632473	14	-0.1179	NEUTRAL	NA	1	RANBP17
TCGA.AA.3982	5	170443400	173683913	1252	0.2466	NEUTRAL	NA	24	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,FGF18,HMP19,LOC101928093,NEURL1B,NKX2-5,NPM1,RANBP17,RPL26L1,SH3PXD2B,SMIM23,STC2,STK10,TLX3,UBTD2"
TCGA.CM.5344	5	170483092	178033263	2464	0.0012	NEUTRAL	NA	76	"ARL10,ATP6V0E1,B4GALT7,BNIP1,BOD1,C5orf47,CDHR2,CLK4,CLTB,COL23A1,CPEB4,CPLX2,CREBRF,DBN1,DDX41,DOK3,DRD1,DUSP1,EFCAB9,EIF4E1B,ERGIC1,F12,FAF2,FAM153A,FAM153B,FAM193B,FBXW11,FGF18,FGFR4,GPRIN1,GRK6,HIGD2A,HK3,HMP19,HNRNPAB,HRH2,KIAA1191,LMAN2,LOC101928093,MSX2,MXD3,N4BP3,NEURL1B,NHP2,NKX2-5,NOP16,NPM1,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RANBP17,RGS14,RMND5B,RNF44,RPL26L1,SFXN1,SH3PXD2B,SIMC1,SLC34A1,SMIM23,SNCB,STC2,STK10,THOC3,TLX3,TMED9,TSPAN17,UBTD2,UIMC1,UNC5A,ZNF346"
TCGA.AG.A01W.01A	5	170581312	171259504	33	-0.3105	NEUTRAL	NA	5	"FGF18,NPM1,RANBP17,SMIM23,TLX3"
TCGA.AA.3941	5	170617858	173683913	1233	0.329	NEUTRAL	NA	24	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,FGF18,HMP19,LOC101928093,NEURL1B,NKX2-5,NPM1,RANBP17,RPL26L1,SH3PXD2B,SMIM23,STC2,STK10,TLX3,UBTD2"
TCGA.A6.3807	5	170623390	174325937	1520	-0.1728	NEUTRAL	NA	25	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,FGF18,HMP19,LOC101928093,MSX2,NEURL1B,NKX2-5,NPM1,RANBP17,RPL26L1,SH3PXD2B,SMIM23,STC2,STK10,TLX3,UBTD2"
TCGA.AG.4009.01A	5	170640596	170819663	15	-0.4756	NEUTRAL	NA	3	"NPM1,RANBP17,TLX3"
TCGA.AG.A00C.01A	5	170648706	170883511	24	0.359	NEUTRAL	NA	4	"FGF18,NPM1,RANBP17,TLX3"
TCGA.AA.A00F.01A	5	170667885	170883511	22	0.0022	NEUTRAL	NA	4	"FGF18,NPM1,RANBP17,TLX3"
TCGA.AZ.4684.01A	5	170692648	173416266	134	-0.1571	NEUTRAL	NA	23	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,FGF18,LOC101928093,NEURL1B,NKX2-5,NPM1,RANBP17,RPL26L1,SH3PXD2B,SMIM23,STC2,STK10,TLX3,UBTD2"
TCGA.AA.3509.01A	5	170692648	173425107	135	-0.0716	NEUTRAL	NA	23	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,FGF18,LOC101928093,NEURL1B,NKX2-5,NPM1,RANBP17,RPL26L1,SH3PXD2B,SMIM23,STC2,STK10,TLX3,UBTD2"
TCGA.CK.4948.01B	5	170814884	170834645	10	-0.4584	NEUTRAL	NA	1	NPM1
TCGA.A6.3810.01A	5	170816993	170837449	10	-0.2329	NEUTRAL	NA	1	NPM1
TCGA.AA.A00D.01A	5	170818261	170834645	7	0.0871	NEUTRAL	NA	1	NPM1
TCGA.AA.A02R.01A	5	170834645	180686963	600	-0.0174	NEUTRAL	NA	112	Too-Many
TCGA.CK.4948.01B	5	170837449	180686963	813	-0.1347	NEUTRAL	NA	112	Too-Many
TCGA.A6.3810.01A	5	170847119	180686963	825	0.0725	NEUTRAL	NA	111	Too-Many
TCGA.AA.A010.01A	5	170883511	171384559	13	0.0056	NEUTRAL	NA	3	"FBXW11,FGF18,SMIM23"
TCGA.AF.3914.01A	5	170883511	171881223	48	0.1344	NEUTRAL	NA	7	"EFCAB9,FBXW11,FGF18,SH3PXD2B,SMIM23,STK10,UBTD2"
TCGA.CK.5914.01A	5	170883511	172096741	50	0.3631	NEUTRAL	NA	8	"EFCAB9,FBXW11,FGF18,NEURL1B,SH3PXD2B,SMIM23,STK10,UBTD2"
TCGA.A6.6648	5	170913806	174135221	1421	-0.3194	NEUTRAL	NA	20	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,HMP19,LOC101928093,NEURL1B,NKX2-5,RPL26L1,SH3PXD2B,SMIM23,STC2,STK10,UBTD2"
TCGA.BM.6198	5	171031119	180692832	3106	0.01885	NEUTRAL	NA	110	Too-Many
TCGA.AG.4009.01A	5	171295597	171384559	12	-0.0668	NEUTRAL	NA	1	FBXW11
TCGA.AA.A00F.01A	5	171295597	171479886	14	-0.3392	NEUTRAL	NA	2	"FBXW11,STK10"
TCGA.AG.3909.01A	5	171295597	172659950	80	0.3128	NEUTRAL	NA	14	"ATP6V0E1,BNIP1,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,LOC101928093,NEURL1B,NKX2-5,RPL26L1,SH3PXD2B,STK10,UBTD2"
TCGA.AG.A00C.01A	5	171295597	172661713	80	-0.1588	NEUTRAL	NA	14	"ATP6V0E1,BNIP1,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,LOC101928093,NEURL1B,NKX2-5,RPL26L1,SH3PXD2B,STK10,UBTD2"
TCGA.AG.3906.01A	5	171295597	175540736	137	4.00E-04	NEUTRAL	NA	26	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CPLX2,CREBRF,DRD1,DUSP1,EFCAB9,ERGIC1,FAM153B,FBXW11,HMP19,HRH2,LOC101928093,MSX2,NEURL1B,NKX2-5,RPL26L1,SFXN1,SH3PXD2B,STC2,STK10,THOC3,UBTD2"
TCGA.AG.3891.01A	5	171295597	175824892	173	0.0269	NEUTRAL	NA	32	"ARL10,ATP6V0E1,BNIP1,BOD1,C5orf47,CLTB,CPEB4,CPLX2,CREBRF,DRD1,DUSP1,EFCAB9,ERGIC1,FAM153B,FBXW11,HIGD2A,HMP19,HRH2,KIAA1191,LOC101928093,MSX2,NEURL1B,NKX2-5,NOP16,RPL26L1,SFXN1,SH3PXD2B,SIMC1,STC2,STK10,THOC3,UBTD2"
TCGA.AA.A01Q.01A	5	171295597	176017037	192	0.0881	NEUTRAL	NA	35	"ARL10,ATP6V0E1,BNIP1,BOD1,C5orf47,CDHR2,CLTB,CPEB4,CPLX2,CREBRF,DRD1,DUSP1,EFCAB9,ERGIC1,FAF2,FAM153B,FBXW11,HIGD2A,HMP19,HRH2,KIAA1191,LOC101928093,MSX2,NEURL1B,NKX2-5,NOP16,RNF44,RPL26L1,SFXN1,SH3PXD2B,SIMC1,STC2,STK10,THOC3,UBTD2"
TCGA.AG.4009.01A	5	171471859	171849361	33	0.2773	NEUTRAL	NA	4	"EFCAB9,SH3PXD2B,STK10,UBTD2"
TCGA.AA.A00F.01A	5	171488091	176370285	204	-0.207	NEUTRAL	NA	41	"ARL10,ATP6V0E1,BNIP1,BOD1,C5orf47,CDHR2,CLTB,CPEB4,CPLX2,CREBRF,DRD1,DUSP1,EFCAB9,EIF4E1B,ERGIC1,FAF2,FAM153B,GPRIN1,HIGD2A,HK3,HMP19,HRH2,KIAA1191,LOC101928093,MSX2,NEURL1B,NKX2-5,NOP16,RNF44,RPL26L1,SFXN1,SH3PXD2B,SIMC1,SNCB,STC2,STK10,THOC3,TSPAN17,UBTD2,UIMC1,UNC5A"
TCGA.AA.A00N.01A	5	171881223	173428117	68	-0.1074	NEUTRAL	NA	14	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,DUSP1,ERGIC1,LOC101928093,NEURL1B,NKX2-5,RPL26L1,SH3PXD2B,STC2"
TCGA.D5.6538	5	172128356	180692832	2634	0.3013	NEUTRAL	NA	103	Too-Many
TCGA.AA.A024.01A	5	172197124	180666434	654	0.0801	NEUTRAL	NA	101	Too-Many
TCGA.AG.A01W.01A	5	172197578	175719003	111	-0.4557	NEUTRAL	NA	20	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CPLX2,CREBRF,DRD1,DUSP1,ERGIC1,FAM153B,HMP19,HRH2,MSX2,NKX2-5,RPL26L1,SFXN1,SIMC1,STC2,THOC3"
TCGA.AG.4009.01A	5	172315635	173534266	53	-0.0325	NEUTRAL	NA	11	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,ERGIC1,HMP19,NKX2-5,RPL26L1,STC2"
TCGA.AF.3914.01A	5	172315635	176491459	217	-0.1093	NEUTRAL	NA	35	"ARL10,ATP6V0E1,BNIP1,BOD1,C5orf47,CDHR2,CLTB,CPEB4,CPLX2,CREBRF,DRD1,EIF4E1B,ERGIC1,FAF2,FAM153B,GPRIN1,HIGD2A,HK3,HMP19,HRH2,KIAA1191,MSX2,NKX2-5,NOP16,RNF44,RPL26L1,SFXN1,SIMC1,SNCB,STC2,THOC3,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AA.A029.01A	5	172315635	180686963	572	-0.3401	NEUTRAL	NA	101	Too-Many
TCGA.CK.5914.01A	5	172362150	175394064	76	-0.2559	NEUTRAL	NA	17	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CPLX2,CREBRF,DRD1,ERGIC1,HMP19,HRH2,MSX2,NKX2-5,RPL26L1,SFXN1,STC2,THOC3"
TCGA.AA.A00D.01A	5	172362150	179004008	378	-0.3104	NEUTRAL	NA	72	"ADAMTS2,ARL10,ATP6V0E1,B4GALT7,BNIP1,BOD1,C5orf47,CDHR2,CLK4,CLTB,COL23A1,CPEB4,CPLX2,CREBRF,DBN1,DDX41,DOK3,DRD1,EIF4E1B,ERGIC1,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HRH2,KIAA1191,LMAN2,MSX2,MXD3,N4BP3,NHP2,NKX2-5,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RNF44,RPL26L1,RUFY1,SFXN1,SIMC1,SLC34A1,SNCB,STC2,THOC3,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AM.5820	5	172388211	172583142	33	-0.392	NEUTRAL	NA	4	"ATP6V0E1,BNIP1,CREBRF,RPL26L1"
TCGA.AM.5820	5	172590024	173201916	320	0.1576	NEUTRAL	NA	4	"BNIP1,BOD1,NKX2-5,STC2"
TCGA.AG.A00C.01A	5	172744798	173317186	9	0.3336	NEUTRAL	NA	3	"BOD1,CPEB4,STC2"
TCGA.AG.A01Y	5	172774673	180692832	2433	-0.0727	NEUTRAL	NA	94	"ADAMTS2,ARL10,B4GALT7,BOD1,BTNL3,BTNL8,BTNL9,C5orf45,C5orf47,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPEB4,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3860	5	172934969	174051116	575	-0.4021	NEUTRAL	NA	4	"BOD1,C5orf47,CPEB4,HMP19"
TCGA.AM.5820	5	173206370	175572009	938	0.0804	NEUTRAL	NA	10	"C5orf47,CPEB4,CPLX2,DRD1,FAM153B,HMP19,HRH2,MSX2,SFXN1,THOC3"
TCGA.AA.3818	5	173206370	177890054	1352	0.0033	NEUTRAL	NA	54	"ARL10,B4GALT7,C5orf47,CDHR2,CLTB,COL23A1,CPEB4,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,GPRIN1,GRK6,HIGD2A,HK3,HMP19,HNRNPAB,HRH2,KIAA1191,LMAN2,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RNF44,SFXN1,SIMC1,SLC34A1,SNCB,THOC3,TMED9,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AF.2693	5	173206370	180692832	2171	-0.0455	NEUTRAL	NA	93	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf47,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPEB4,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.CL.4957	5	173206370	180692832	2171	-0.0203	NEUTRAL	NA	93	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf47,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPEB4,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.DM.A1D9	5	173206370	180692832	2166	0.0183	NEUTRAL	NA	93	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf47,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPEB4,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3909.01A	5	173337480	173534266	13	0.3104	NEUTRAL	NA	3	"C5orf47,CPEB4,HMP19"
TCGA.AG.A00C.01A	5	173337480	173534266	13	-0.2553	NEUTRAL	NA	3	"C5orf47,CPEB4,HMP19"
TCGA.AA.A010.01A	5	173359378	174939060	26	-0.1875	NEUTRAL	NA	6	"C5orf47,CPEB4,DRD1,HMP19,MSX2,SFXN1"
TCGA.AA.3866	5	173424463	173452590	5	-0.3912	NEUTRAL	NA	1	C5orf47
TCGA.AA.3866	5	173453205	180692832	2066	0.2834	NEUTRAL	NA	91	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AZ.4684.01A	5	173473730	178987009	448	-0.1292	NEUTRAL	NA	62	"ADAMTS2,ARL10,B4GALT7,CDHR2,CLK4,CLTB,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HRH2,KIAA1191,LMAN2,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RNF44,RUFY1,SFXN1,SIMC1,SLC34A1,SNCB,THOC3,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3509.01A	5	173473730	178989516	449	-0.0703	NEUTRAL	NA	62	"ADAMTS2,ARL10,B4GALT7,CDHR2,CLK4,CLTB,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HRH2,KIAA1191,LMAN2,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RNF44,RUFY1,SFXN1,SIMC1,SLC34A1,SNCB,THOC3,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.A6.2686	5	173501311	180692832	2060	-0.3557	NEUTRAL	NA	91	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HMP19,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AY.5543	5	173646013	180692832	1987	0.3525	NEUTRAL	NA	90	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3844	5	173685518	173703202	21	-0.151	NEUTRAL	NA	0	None
TCGA.AA.3982	5	173695777	178886826	1484	0.2176	NEUTRAL	NA	60	"ADAMTS2,ARL10,B4GALT7,CDHR2,CLK4,CLTB,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HRH2,KIAA1191,LMAN2,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RNF44,SFXN1,SIMC1,SLC34A1,SNCB,THOC3,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3941	5	173696694	173728189	22	-0.2488	NEUTRAL	NA	0	None
TCGA.AA.3941	5	173730357	174650291	406	0.282	NEUTRAL	NA	1	MSX2
TCGA.AA.3860	5	174051288	176177656	694	0.2716	NEUTRAL	NA	20	"ARL10,CDHR2,CLTB,CPLX2,DRD1,EIF4E1B,FAF2,FAM153B,GPRIN1,HIGD2A,HRH2,KIAA1191,MSX2,NOP16,RNF44,SFXN1,SIMC1,SNCB,THOC3,TSPAN17"
TCGA.CM.6163	5	174105198	174126498	8	-0.3981	NEUTRAL	NA	0	None
TCGA.CM.6163	5	174132300	174145716	11	-0.0165	NEUTRAL	NA	0	None
TCGA.AG.4022	5	174138705	180692832	1741	-0.088	NEUTRAL	NA	90	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.CM.6163	5	174149162	174216810	20	-0.461	NEUTRAL	NA	1	MSX2
TCGA.AG.A00C.01A	5	174156120	176084467	112	0.1414	NEUTRAL	NA	20	"ARL10,CDHR2,CLTB,CPLX2,DRD1,EIF4E1B,FAF2,FAM153B,GPRIN1,HIGD2A,HRH2,KIAA1191,MSX2,NOP16,RNF44,SFXN1,SIMC1,SNCB,THOC3,TSPAN17"
TCGA.A6.6648	5	174188888	180692832	1731	-0.3508	NEUTRAL	NA	89	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.CM.6163	5	174225118	180692832	1709	0.1001	NEUTRAL	NA	89	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.A6.3807	5	174327518	180692832	1671	0.1379	NEUTRAL	NA	89	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3941	5	174656344	174700795	23	0.303	NEUTRAL	NA	0	None
TCGA.AA.3941	5	174705568	174754279	29	-0.3825	NEUTRAL	NA	0	None
TCGA.AA.3854	5	174744097	180692832	1483	0.2616	NEUTRAL	NA	89	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3909.01A	5	174935996	175386925	14	-0.1011	NEUTRAL	NA	4	"CPLX2,HRH2,SFXN1,THOC3"
TCGA.AA.A00N.01A	5	174935996	177576687	331	-0.3679	NEUTRAL	NA	46	"ARL10,B4GALT7,CDHR2,CLTB,CPLX2,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,GPRIN1,GRK6,HIGD2A,HK3,HRH2,KIAA1191,LMAN2,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RNF44,SFXN1,SIMC1,SLC34A1,SNCB,THOC3,TMED9,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AG.4009.01A	5	174938390	175536025	27	0.0772	NEUTRAL	NA	5	"CPLX2,FAM153B,HRH2,SFXN1,THOC3"
TCGA.D5.5538	5	175291956	175784598	51	-0.4829	NEUTRAL	NA	5	"CPLX2,FAM153B,KIAA1191,SIMC1,THOC3"
TCGA.AA.A00Q.01A	5	175386925	175772139	14	-0.0548	NEUTRAL	NA	3	"FAM153B,SIMC1,THOC3"
TCGA.AG.3909.01A	5	175517289	175812185	34	0.2711	NEUTRAL	NA	5	"ARL10,FAM153B,KIAA1191,NOP16,SIMC1"
TCGA.AG.A011.01A	5	175523778	180686963	531	0.1119	NEUTRAL	NA	84	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3939.01A	5	175525955	180686963	626	0.025	NEUTRAL	NA	84	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.A6.6652	5	175571150	180692832	1234	-0.0424	NEUTRAL	NA	83	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AM.5820	5	175573634	175592403	13	-0.1404	NEUTRAL	NA	0	None
TCGA.DM.A28M.01A	5	175665465	180374474	602	0.1533	NEUTRAL	NA	75	"ADAMTS2,ARL10,B4GALT7,BTNL8,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.CK.5914.01A	5	175716668	175906127	35	-0.4808	NEUTRAL	NA	7	"ARL10,CLTB,FAF2,HIGD2A,KIAA1191,NOP16,SIMC1"
TCGA.AG.A015.01A	5	175716668	179200858	384	-0.118	NEUTRAL	NA	59	"ADAMTS2,ARL10,B4GALT7,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM193B,FGFR4,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,KIAA1191,LMAN2,MAML1,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RNF44,RUFY1,SIMC1,SLC34A1,SNCB,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.A01W.01A	5	175725938	175757512	14	-0.0011	NEUTRAL	NA	1	SIMC1
TCGA.A6.3808.01A	5	175740662	176491459	126	-0.5037	NEUTRAL	NA	17	"ARL10,CDHR2,CLTB,EIF4E1B,FAF2,GPRIN1,HIGD2A,HK3,KIAA1191,NOP16,RNF44,SIMC1,SNCB,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AA.3861.01A	5	175751585	177035864	243	-0.0633	NEUTRAL	NA	36	"ARL10,B4GALT7,CDHR2,CLTB,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM193B,FGFR4,GPRIN1,GRK6,HIGD2A,HK3,KIAA1191,LMAN2,MXD3,NOP16,NSD1,PDLIM7,PFN3,PRELID1,PRR7,RAB24,RGS14,RNF44,SIMC1,SLC34A1,SNCB,TMED9,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AA.3862.01A	5	175751585	177036494	242	0.298	NEUTRAL	NA	36	"ARL10,B4GALT7,CDHR2,CLTB,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM193B,FGFR4,GPRIN1,GRK6,HIGD2A,HK3,KIAA1191,LMAN2,MXD3,NOP16,NSD1,PDLIM7,PFN3,PRELID1,PRR7,RAB24,RGS14,RNF44,SIMC1,SLC34A1,SNCB,TMED9,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AM.5820	5	175757715	175819031	16	-0.1155	NEUTRAL	NA	5	"ARL10,HIGD2A,KIAA1191,NOP16,SIMC1"
TCGA.5M.AAT5	5	175757715	180692832	1206	0.1645	NEUTRAL	NA	83	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3906.01A	5	175763693	176005358	44	0.0694	NEUTRAL	NA	9	"ARL10,CDHR2,CLTB,FAF2,HIGD2A,KIAA1191,NOP16,RNF44,SIMC1"
TCGA.AA.3495	5	175765987	177047008	232	-0.4584	NEUTRAL	NA	36	"ARL10,B4GALT7,CDHR2,CLTB,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM193B,FGFR4,GPRIN1,GRK6,HIGD2A,HK3,KIAA1191,LMAN2,MXD3,NOP16,NSD1,PDLIM7,PFN3,PRELID1,PRR7,RAB24,RGS14,RNF44,SIMC1,SLC34A1,SNCB,TMED9,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AA.A00Q.01A	5	175774666	180043317	451	-0.458	NEUTRAL	NA	70	"ADAMTS2,ARL10,B4GALT7,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A010.01A	5	175793362	175933722	26	-0.2025	NEUTRAL	NA	5	"ARL10,CLTB,FAF2,HIGD2A,NOP16"
TCGA.D5.5538	5	175806849	177033518	217	-0.0869	NEUTRAL	NA	33	"B4GALT7,CDHR2,CLTB,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM193B,FGFR4,GPRIN1,GRK6,HIGD2A,HK3,LMAN2,MXD3,NOP16,NSD1,PDLIM7,PFN3,PRELID1,PRR7,RAB24,RGS14,RNF44,SLC34A1,SNCB,TMED9,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AG.4009.01A	5	175811180	176015995	38	-0.0867	NEUTRAL	NA	6	"CDHR2,CLTB,FAF2,HIGD2A,NOP16,RNF44"
TCGA.AG.3611.01A	5	175875341	175958953	16	-0.0953	NEUTRAL	NA	2	"FAF2,RNF44"
TCGA.AM.5820	5	175923353	175949232	16	-0.1029	NEUTRAL	NA	1	FAF2
TCGA.AG.A01W.01A	5	175924888	175934644	6	-0.5044	NEUTRAL	NA	1	FAF2
TCGA.AG.A01W.01A	5	175952263	176237465	30	-0.2085	NEUTRAL	NA	6	"CDHR2,EIF4E1B,GPRIN1,RNF44,SNCB,TSPAN17"
TCGA.CK.5914.01A	5	175955971	175995640	9	-0.2351	NEUTRAL	NA	2	"CDHR2,RNF44"
TCGA.AG.A01L.01A	5	175958953	176017037	17	-0.2087	NEUTRAL	NA	2	"CDHR2,RNF44"
TCGA.AG.3909.01A	5	175992281	176300952	40	-0.4283	NEUTRAL	NA	6	"CDHR2,EIF4E1B,GPRIN1,SNCB,TSPAN17,UNC5A"
TCGA.AG.3611.01A	5	175992281	180056704	423	-0.3622	NEUTRAL	NA	63	"ADAMTS2,B4GALT7,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GPRIN1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT4B,MXD3,N4BP3,NHP2,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A02K.01A	5	175992282	176018180	17	0.2916	NEUTRAL	NA	1	CDHR2
TCGA.AG.3891.01A	5	175992610	176084467	35	-0.0415	NEUTRAL	NA	5	"CDHR2,EIF4E1B,GPRIN1,SNCB,TSPAN17"
TCGA.AG.A01L.01A	5	176018179	176306311	24	0.3555	NEUTRAL	NA	6	"CDHR2,EIF4E1B,GPRIN1,SNCB,TSPAN17,UNC5A"
TCGA.AA.A02K.01A	5	176019657	179228308	403	-0.0991	NEUTRAL	NA	53	"ADAMTS2,B4GALT7,C5orf60,CANX,CBY3,CDHR2,CLK4,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAM153A,FAM193B,FGFR4,GPRIN1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RUFY1,SLC34A1,SNCB,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A010.01A	5	176056488	176784951	107	0.0047	NEUTRAL	NA	14	"EIF4E1B,FGFR4,HK3,LMAN2,MXD3,NSD1,PRELID1,RAB24,RGS14,SNCB,TSPAN17,UIMC1,UNC5A,ZNF346"
TCGA.AG.3906.01A	5	176070036	176289586	11	-0.1925	NEUTRAL	NA	3	"EIF4E1B,TSPAN17,UNC5A"
TCGA.AG.4009.01A	5	176079697	176297332	9	-0.2022	NEUTRAL	NA	2	"TSPAN17,UNC5A"
TCGA.AM.5820	5	176109873	177655005	208	-0.0322	NEUTRAL	NA	30	"B4GALT7,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,GRK6,HK3,HNRNPAB,LMAN2,MXD3,N4BP3,NHP2,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,SLC34A1,TMED9,UIMC1,UNC5A,ZNF346"
TCGA.G4.6310	5	176144838	180692832	1095	-0.1208	NEUTRAL	NA	70	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3860	5	176209510	180692832	1088	-0.365	NEUTRAL	NA	70	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A01Z	5	176231456	180692832	1083	-0.0353	NEUTRAL	NA	70	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3971	5	176248727	180692832	1076	0.3724	NEUTRAL	NA	70	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.A01W.01A	5	176268079	177481344	176	-0.2138	NEUTRAL	NA	25	"B4GALT7,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,GRK6,HK3,LMAN2,MXD3,NSD1,PDLIM7,PFN3,PRELID1,PROP1,PRR7,RAB24,RGS14,SLC34A1,TMED9,UIMC1,UNC5A,ZNF346"
TCGA.AG.A00C.01A	5	176289586	176315283	13	-0.4623	NEUTRAL	NA	2	"HK3,UNC5A"
TCGA.CK.5914.01A	5	176297332	176317637	16	-0.1464	NEUTRAL	NA	2	"HK3,UNC5A"
TCGA.AG.4009.01A	5	176300952	176332934	19	0.3447	NEUTRAL	NA	3	"HK3,UIMC1,UNC5A"
TCGA.AA.A01Q.01A	5	176300952	176477701	36	0.2909	NEUTRAL	NA	4	"HK3,UIMC1,UNC5A,ZNF346"
TCGA.AG.3909.01A	5	176304137	176370285	22	0.3748	NEUTRAL	NA	3	"HK3,UIMC1,UNC5A"
TCGA.AG.3906.01A	5	176304137	176778135	82	-0.0324	NEUTRAL	NA	10	"FGFR4,HK3,LMAN2,MXD3,NSD1,PRELID1,RAB24,UIMC1,UNC5A,ZNF346"
TCGA.AA.3930.01A	5	176304137	180686963	523	0.0241	NEUTRAL	NA	70	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3891.01A	5	176306311	178699871	285	0.0491	NEUTRAL	NA	40	"ADAMTS2,B4GALT7,CLK4,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,GRK6,GRM6,HK3,HNRNPAB,LMAN2,MXD3,N4BP3,NHP2,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,SLC34A1,TMED9,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.A01L.01A	5	176306694	176323016	11	-0.3022	NEUTRAL	NA	2	"HK3,UNC5A"
TCGA.AG.A00C.01A	5	176316374	177674718	193	0.1567	NEUTRAL	NA	30	"B4GALT7,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,GRK6,HK3,HNRNPAB,LMAN2,MXD3,N4BP3,NHP2,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,SLC34A1,TMED9,UIMC1,ZNF346"
TCGA.AG.A01L.01A	5	176332256	176477701	18	0.1725	NEUTRAL	NA	2	"UIMC1,ZNF346"
TCGA.AG.4009.01A	5	176334050	176778135	65	-0.1669	NEUTRAL	NA	8	"FGFR4,LMAN2,MXD3,NSD1,PRELID1,RAB24,UIMC1,ZNF346"
TCGA.AA.A02H.01A	5	176338254	178699871	225	-0.3676	NEUTRAL	NA	38	"ADAMTS2,B4GALT7,CLK4,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,GRK6,GRM6,HNRNPAB,LMAN2,MXD3,N4BP3,NHP2,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,SLC34A1,TMED9,UIMC1,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A00F.01A	5	176378423	176409421	8	0.2916	NEUTRAL	NA	1	UIMC1
TCGA.CK.5914.01A	5	176449733	176491459	7	0.3383	NEUTRAL	NA	1	ZNF346
TCGA.AA.A00F.01A	5	176449733	180686963	393	-0.0518	NEUTRAL	NA	67	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3909.01A	5	176468079	176491459	6	0.3712	NEUTRAL	NA	1	ZNF346
TCGA.AA.A01K.01A	5	176471338	180686963	396	-0.223	NEUTRAL	NA	67	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A01Q.01A	5	176489039	176562063	12	-0.362	NEUTRAL	NA	3	"FGFR4,NSD1,ZNF346"
TCGA.AF.A56N	5	176489255	180692832	1030	-0.0287	NEUTRAL	NA	67	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.CK.5914.01A	5	176516548	176636598	13	-0.4792	NEUTRAL	NA	2	"FGFR4,NSD1"
TCGA.A6.3808.01A	5	176562063	177036494	129	-0.398	NEUTRAL	NA	18	"B4GALT7,DBN1,DDX41,DOK3,F12,FAM193B,GRK6,LMAN2,MXD3,NSD1,PDLIM7,PFN3,PRELID1,PRR7,RAB24,RGS14,SLC34A1,TMED9"
TCGA.AG.3909.01A	5	176618847	176710741	18	0.2921	NEUTRAL	NA	1	NSD1
TCGA.AA.A01Q.01A	5	176618847	176721951	23	0.2703	NEUTRAL	NA	1	NSD1
TCGA.AF.3914.01A	5	176618847	176778135	37	-0.0332	NEUTRAL	NA	5	"LMAN2,MXD3,NSD1,PRELID1,RAB24"
TCGA.AG.A01L.01A	5	176618847	180686963	408	0.2391	NEUTRAL	NA	65	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,FLT4,GFPT2,GNB2L1,GRK6,GRM6,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RUFY1,SCGB3A1,SLC34A1,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.CK.5914.01A	5	176662775	176721123	19	0.1219	NEUTRAL	NA	1	NSD1
TCGA.AG.3909.01A	5	176715773	177034263	91	-0.3713	NEUTRAL	NA	18	"B4GALT7,DBN1,DDX41,DOK3,F12,FAM193B,GRK6,LMAN2,MXD3,NSD1,PDLIM7,PFN3,PRELID1,PRR7,RAB24,RGS14,SLC34A1,TMED9"
TCGA.CK.5914.01A	5	176721951	177151707	108	-0.4935	NEUTRAL	NA	19	"B4GALT7,DBN1,DDX41,DOK3,F12,FAM153A,FAM193B,GRK6,LMAN2,MXD3,NSD1,PDLIM7,PFN3,PRELID1,PRR7,RAB24,RGS14,SLC34A1,TMED9"
TCGA.AA.A01Q.01A	5	176764089	176798832	9	0.1875	NEUTRAL	NA	2	"LMAN2,RGS14"
TCGA.AF.3914.01A	5	176812693	176830850	10	-0.3084	NEUTRAL	NA	3	"F12,PFN3,SLC34A1"
TCGA.AF.3914.01A	5	176863022	176882735	5	-0.1791	NEUTRAL	NA	2	"GRK6,PRR7"
TCGA.AA.A01Q.01A	5	176900379	176931756	14	-0.316	NEUTRAL	NA	3	"DBN1,DOK3,PDLIM7"
TCGA.AG.4009.01A	5	176915066	177576687	60	-0.4086	NEUTRAL	NA	11	"B4GALT7,DDX41,DOK3,FAM153A,FAM193B,N4BP3,NHP2,PDLIM7,PROP1,RMND5B,TMED9"
TCGA.AA.A010.01A	5	176918760	176963319	22	-0.4492	NEUTRAL	NA	4	"DDX41,DOK3,FAM193B,PDLIM7"
TCGA.AG.3906.01A	5	176923376	176964853	19	-0.0667	NEUTRAL	NA	4	"DDX41,DOK3,FAM193B,PDLIM7"
TCGA.AF.3914.01A	5	176930982	177580428	65	-0.1022	NEUTRAL	NA	10	"B4GALT7,DDX41,DOK3,FAM153A,FAM193B,N4BP3,NHP2,PROP1,RMND5B,TMED9"
TCGA.AA.A01Q.01A	5	176943679	177036494	15	0.039	NEUTRAL	NA	4	"B4GALT7,DDX41,FAM193B,TMED9"
TCGA.AG.3906.01A	5	177036494	177473807	24	-0.1072	NEUTRAL	NA	3	"B4GALT7,FAM153A,PROP1"
TCGA.AA.A010.01A	5	177151070	177576687	33	-0.0704	NEUTRAL	NA	5	"FAM153A,N4BP3,NHP2,PROP1,RMND5B"
TCGA.A6.6782	5	177377647	180692832	967	0.3029	NEUTRAL	NA	46	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,N4BP3,NHP2,OR2V1,OR2V2,OR2Y1,PHYKPL,PROP1,RASGEF1C,RMND5B,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.DM.A0XD	5	177401381	179526788	638	-0.0513	NEUTRAL	NA	28	"ADAMTS2,C5orf45,C5orf60,CANX,CBY3,CLK4,COL23A1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MGAT4B,N4BP3,NHP2,PHYKPL,PROP1,RMND5B,RNF130,RUFY1,SQSTM1,TBC1D9B,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3909.01A	5	177419709	177473807	8	0.1875	NEUTRAL	NA	1	PROP1
TCGA.CM.4744.01A	5	177419709	180686963	364	-0.0702	NEUTRAL	NA	46	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,N4BP3,NHP2,OR2V1,OR2V2,OR2Y1,PHYKPL,PROP1,RASGEF1C,RMND5B,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.A6.3808.01A	5	177565074	179042470	134	-0.3606	NEUTRAL	NA	16	"ADAMTS2,CLK4,COL23A1,GRM6,HNRNPAB,HNRNPH1,NHP2,PHYKPL,RMND5B,RUFY1,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3861.01A	5	177569534	180686963	329	-0.1059	NEUTRAL	NA	44	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,NHP2,OR2V1,OR2V2,OR2Y1,PHYKPL,RASGEF1C,RMND5B,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3862.01A	5	177569534	180686963	331	0.1868	NEUTRAL	NA	44	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,NHP2,OR2V1,OR2V2,OR2Y1,PHYKPL,RASGEF1C,RMND5B,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.A01N.01A	5	177576687	180686963	287	-0.2075	NEUTRAL	NA	43	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,NHP2,OR2V1,OR2V2,OR2Y1,PHYKPL,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3906.01A	5	177649336	178408617	55	-0.0874	NEUTRAL	NA	8	"CLK4,COL23A1,GRM6,PHYKPL,ZFP2,ZNF354A,ZNF354B,ZNF454"
TCGA.AF.3914.01A	5	177649336	180686963	303	-0.1464	NEUTRAL	NA	41	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,PHYKPL,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A010.01A	5	177651412	177733799	31	0.0094	NEUTRAL	NA	2	"COL23A1,PHYKPL"
TCGA.AG.4009.01A	5	177665644	177673202	5	-0.3634	NEUTRAL	NA	1	COL23A1
TCGA.AA.A00N.01A	5	177666082	178016863	27	-0.0541	NEUTRAL	NA	1	COL23A1
TCGA.AA.A01Q.01A	5	177669278	178540817	40	-0.031	NEUTRAL	NA	10	"ADAMTS2,CLK4,COL23A1,GRM6,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3909.01A	5	177673202	177987615	20	0.1207	NEUTRAL	NA	1	COL23A1
TCGA.AG.4009.01A	5	177674462	177987615	16	0.1836	NEUTRAL	NA	1	COL23A1
TCGA.AG.A00C.01A	5	177675127	177733799	16	-0.2261	NEUTRAL	NA	1	COL23A1
TCGA.AM.5820	5	177872332	178409810	187	0.06	NEUTRAL	NA	7	"CLK4,COL23A1,GRM6,ZFP2,ZNF354A,ZNF354B,ZNF454"
TCGA.AA.3818	5	177893880	180692832	815	0.0026	NEUTRAL	NA	40	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.F5.6811.01A	5	177920221	177982835	11	-0.4149	NEUTRAL	NA	1	COL23A1
TCGA.D5.5538	5	177966140	180692832	785	-0.0606	NEUTRAL	NA	40	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.A00C.01A	5	177987615	179036328	69	0.1808	NEUTRAL	NA	11	"ADAMTS2,CLK4,COL23A1,GRM6,RUFY1,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.4009.01A	5	178030596	178579116	48	-0.5145	NEUTRAL	NA	9	"ADAMTS2,CLK4,GRM6,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3909.01A	5	178030596	180043317	203	-0.5051	NEUTRAL	NA	27	"ADAMTS2,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,FLT4,GFPT2,GRM6,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT4B,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3495	5	178032844	180692832	765	0.0321	NEUTRAL	NA	39	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,FLT4,GFPT2,GNB2L1,GRM6,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.A023.01A	5	178035342	180686963	239	-0.3866	NEUTRAL	NA	39	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,FLT4,GFPT2,GNB2L1,GRM6,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A010.01A	5	178050229	178391624	15	0.0142	NEUTRAL	NA	5	"CLK4,ZFP2,ZNF354A,ZNF354B,ZNF454"
TCGA.F5.6811.01A	5	178071626	180619569	289	0.2334	NEUTRAL	NA	34	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,GRM6,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A010.01A	5	178421415	178770796	30	-0.2383	NEUTRAL	NA	4	"ADAMTS2,GRM6,ZNF354C,ZNF879"
TCGA.AM.5820	5	178429999	178516482	32	-0.0087	NEUTRAL	NA	2	"ZNF354C,ZNF879"
TCGA.AG.3906.01A	5	178454454	178699871	22	-0.1485	NEUTRAL	NA	3	"ADAMTS2,ZNF354C,ZNF879"
TCGA.AG.A01W.01A	5	178473477	178518284	14	0.1624	NEUTRAL	NA	1	ZNF354C
TCGA.CA.5254	5	178515195	180692832	605	-0.0516	NEUTRAL	NA	31	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,GNB2L1,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AG.A01W.01A	5	178540631	178982606	29	-0.4859	NEUTRAL	NA	2	"ADAMTS2,RUFY1"
TCGA.AA.A01Q.01A	5	178548618	179285676	88	-0.4946	NEUTRAL	NA	11	"ADAMTS2,C5orf45,C5orf60,CANX,CBY3,HNRNPH1,LTC4S,MAML1,MGAT4B,RUFY1,SQSTM1"
TCGA.AG.4009.01A	5	178580452	179036328	23	0.0141	NEUTRAL	NA	2	"ADAMTS2,RUFY1"
TCGA.AM.5820	5	178810044	180692832	496	0.1125	NEUTRAL	NA	30	"BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,GNB2L1,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.CM.5344	5	178846091	179033400	44	-0.0348	NEUTRAL	NA	1	RUFY1
TCGA.AA.A010.01A	5	179004008	179025662	9	-0.2731	NEUTRAL	NA	1	RUFY1
TCGA.AA.A00L.01A	5	179007880	179032860	10	0.2472	NEUTRAL	NA	1	RUFY1
TCGA.AA.A00D.01A	5	179007880	179155542	34	0.0686	NEUTRAL	NA	5	"C5orf60,CANX,CBY3,HNRNPH1,RUFY1"
TCGA.AA.3509.01A	5	179023533	180166136	171	-0.2609	NEUTRAL	NA	19	"C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT4B,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B"
TCGA.AZ.4684.01A	5	179023533	180338291	181	-0.301	NEUTRAL	NA	22	"BTNL8,C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,ZFP62"
TCGA.AA.A00L.01A	5	179034523	180686963	187	-0.3664	NEUTRAL	NA	30	"BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,GNB2L1,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.A6.3808.01A	5	179069292	180041021	138	-0.4853	NEUTRAL	NA	16	"C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,LTC4S,MAML1,MAPK9,MGAT4B,RASGEF1C,RNF130,SCGB3A1,SQSTM1,TBC1D9B"
TCGA.AG.A01W.01A	5	179075686	179086240	7	-0.4042	NEUTRAL	NA	0	None
TCGA.AA.A01C.01A	5	179143069	180666434	163	-0.0913	NEUTRAL	NA	25	"BTNL3,BTNL8,BTNL9,C5orf45,CANX,CNOT6,FLT4,GFPT2,GNB2L1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM7,ZFP62"
TCGA.AA.A02H.01A	5	179146622	179382571	40	-0.2808	NEUTRAL	NA	8	"C5orf45,CANX,LTC4S,MAML1,MGAT4B,RNF130,SQSTM1,TBC1D9B"
TCGA.AG.A01W.01A	5	179182522	179212937	12	-0.4833	NEUTRAL	NA	1	MAML1
TCGA.AG.3891.01A	5	179192327	179529008	51	-0.0351	NEUTRAL	NA	8	"C5orf45,LTC4S,MAML1,MGAT4B,RASGEF1C,RNF130,SQSTM1,TBC1D9B"
TCGA.AA.A00D.01A	5	179192327	180218603	104	-0.3032	NEUTRAL	NA	15	"C5orf45,CNOT6,FLT4,GFPT2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2Y1,RASGEF1C,RNF130,SCGB3A1,SQSTM1,TBC1D9B"
TCGA.AG.A00C.01A	5	179192327	180686963	166	0.1308	NEUTRAL	NA	25	"BTNL3,BTNL8,BTNL9,C5orf45,CNOT6,FLT4,GFPT2,GNB2L1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AG.A01W.01A	5	179232718	179239198	6	0.0684	NEUTRAL	NA	2	"MGAT4B,SQSTM1"
TCGA.AG.A01W.01A	5	179247681	180308763	99	-0.3773	NEUTRAL	NA	13	"C5orf45,CNOT6,FLT4,GFPT2,MAPK9,MGAT1,OR2Y1,RASGEF1C,RNF130,SCGB3A1,SQSTM1,TBC1D9B,ZFP62"
TCGA.AG.3906.01A	5	179249909	179306579	24	-0.2148	NEUTRAL	NA	3	"C5orf45,SQSTM1,TBC1D9B"
TCGA.AG.A015.01A	5	179249909	180374474	103	-0.1043	NEUTRAL	NA	14	"BTNL8,C5orf45,CNOT6,FLT4,GFPT2,MAPK9,MGAT1,OR2Y1,RASGEF1C,RNF130,SCGB3A1,SQSTM1,TBC1D9B,ZFP62"
TCGA.AA.A02K.01A	5	179249916	179290428	13	0.1637	NEUTRAL	NA	3	"C5orf45,SQSTM1,TBC1D9B"
TCGA.AG.4009.01A	5	179250821	179765443	74	-0.0266	NEUTRAL	NA	7	"C5orf45,GFPT2,MAPK9,RASGEF1C,RNF130,SQSTM1,TBC1D9B"
TCGA.AA.A010.01A	5	179259984	179306579	24	-0.4356	NEUTRAL	NA	3	"C5orf45,SQSTM1,TBC1D9B"
TCGA.AA.A02K.01A	5	179292204	179528428	30	-0.2305	NEUTRAL	NA	3	"RASGEF1C,RNF130,TBC1D9B"
TCGA.NH.A50U	5	179300130	180692832	389	-0.4123	NEUTRAL	NA	20	"BTNL3,BTNL8,BTNL9,CNOT6,FLT4,GFPT2,GNB2L1,MAPK9,MGAT1,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,SCGB3A1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AA.A01Q.01A	5	179301863	179554559	30	-0.3874	NEUTRAL	NA	3	"RASGEF1C,RNF130,TBC1D9B"
TCGA.AA.A010.01A	5	179334656	179675922	30	-0.1	NEUTRAL	NA	4	"MAPK9,RASGEF1C,RNF130,TBC1D9B"
TCGA.AG.3906.01A	5	179390421	179688662	27	-0.2444	NEUTRAL	NA	3	"MAPK9,RASGEF1C,RNF130"
TCGA.AA.A02H.01A	5	179407072	180415957	70	-0.3971	NEUTRAL	NA	12	"BTNL3,BTNL8,CNOT6,FLT4,GFPT2,MAPK9,MGAT1,OR2Y1,RASGEF1C,RNF130,SCGB3A1,ZFP62"
TCGA.AA.A02K.01A	5	179529009	180687666	118	0.0351	NEUTRAL	NA	18	"BTNL3,BTNL8,BTNL9,CNOT6,FLT4,GFPT2,GNB2L1,MAPK9,MGAT1,OR2V1,OR2V2,OR2Y1,RASGEF1C,SCGB3A1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AG.3891.01A	5	179538425	179663337	9	-0.4138	NEUTRAL	NA	2	"MAPK9,RASGEF1C"
TCGA.DM.A0XD	5	179613261	180692832	291	-0.0038	NEUTRAL	NA	18	"BTNL3,BTNL8,BTNL9,CNOT6,FLT4,GFPT2,GNB2L1,MAPK9,MGAT1,OR2V1,OR2V2,OR2Y1,RASGEF1C,SCGB3A1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AG.3742	5	179641661	180148275	129	0.0258	NEUTRAL	NA	5	"CNOT6,FLT4,GFPT2,MAPK9,SCGB3A1"
TCGA.AA.A01Q.01A	5	179663337	179956230	17	-0.2321	NEUTRAL	NA	3	"CNOT6,GFPT2,MAPK9"
TCGA.AG.3891.01A	5	179665281	180276804	61	0.0722	NEUTRAL	NA	8	"CNOT6,FLT4,GFPT2,MAPK9,MGAT1,OR2Y1,SCGB3A1,ZFP62"
TCGA.AA.A010.01A	5	179734138	180017558	27	-0.3743	NEUTRAL	NA	3	"CNOT6,GFPT2,SCGB3A1"
TCGA.AG.3906.01A	5	179734138	180050897	36	0.0894	NEUTRAL	NA	4	"CNOT6,FLT4,GFPT2,SCGB3A1"
TCGA.CM.5344	5	179772639	180274252	128	0.0131	NEUTRAL	NA	6	"CNOT6,FLT4,GFPT2,MGAT1,OR2Y1,SCGB3A1"
TCGA.QG.A5YW	5	179910360	180692832	201	-0.1084	NEUTRAL	NA	15	"BTNL3,BTNL8,BTNL9,CNOT6,FLT4,GNB2L1,MGAT1,OR2V1,OR2V2,OR2Y1,SCGB3A1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AG.4009.01A	5	179956230	180651023	62	-0.4682	NEUTRAL	NA	13	"BTNL3,BTNL8,BTNL9,CNOT6,FLT4,MGAT1,OR2V1,OR2V2,OR2Y1,SCGB3A1,TRIM41,TRIM7,ZFP62"
TCGA.AA.A01Q.01A	5	179976894	180017558	11	0.2881	NEUTRAL	NA	2	"CNOT6,SCGB3A1"
TCGA.CK.5914.01A	5	179976894	180030142	12	-0.1542	NEUTRAL	NA	3	"CNOT6,FLT4,SCGB3A1"
TCGA.AA.A01Q.01A	5	180030142	180047125	11	-0.3985	NEUTRAL	NA	1	FLT4
TCGA.AA.A00Q.01A	5	180043856	180481148	32	0.0332	NEUTRAL	NA	7	"BTNL3,BTNL8,BTNL9,FLT4,MGAT1,OR2Y1,ZFP62"
TCGA.AG.3909.01A	5	180043856	180622146	40	-0.1091	NEUTRAL	NA	10	"BTNL3,BTNL8,BTNL9,FLT4,MGAT1,OR2V1,OR2V2,OR2Y1,TRIM7,ZFP62"
TCGA.AG.3906.01A	5	180052821	180432317	24	-0.3563	NEUTRAL	NA	6	"BTNL3,BTNL8,FLT4,MGAT1,OR2Y1,ZFP62"
TCGA.NH.A6GA	5	180055187	180692832	172	0.009	NEUTRAL	NA	13	"BTNL3,BTNL8,BTNL9,FLT4,GNB2L1,MGAT1,OR2V1,OR2V2,OR2Y1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AG.3611.01A	5	180057538	180166136	3	0.2166	NEUTRAL	NA	2	"FLT4,OR2Y1"
TCGA.A6.3808.01A	5	180058654	180686963	61	-0.2063	NEUTRAL	NA	13	"BTNL3,BTNL8,BTNL9,FLT4,GNB2L1,MGAT1,OR2V1,OR2V2,OR2Y1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AA.3982	5	180118944	180163485	13	-0.123	NEUTRAL	NA	0	None
TCGA.AA.3844	5	180148275	180163485	6	-0.183	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	5	180166136	180432317	24	0.0469	NEUTRAL	NA	5	"BTNL3,BTNL8,MGAT1,OR2Y1,ZFP62"
TCGA.AA.3509.01A	5	180166405	180474929	25	0.3566	NEUTRAL	NA	6	"BTNL3,BTNL8,BTNL9,MGAT1,OR2Y1,ZFP62"
TCGA.AG.3611.01A	5	180166405	180686963	49	-0.4809	NEUTRAL	NA	12	"BTNL3,BTNL8,BTNL9,GNB2L1,MGAT1,OR2V1,OR2V2,OR2Y1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.D5.5539	5	180235502	180692832	124	0.2142	NEUTRAL	NA	11	"BTNL3,BTNL8,BTNL9,GNB2L1,MGAT1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AG.3891.01A	5	180277962	180472461	18	-0.4253	NEUTRAL	NA	4	"BTNL3,BTNL8,BTNL9,ZFP62"
TCGA.AA.A00N.01A	5	180326237	180472461	18	0.2113	NEUTRAL	NA	3	"BTNL3,BTNL8,BTNL9"
TCGA.CK.5914.01A	5	180326237	180474929	11	0.3408	NEUTRAL	NA	3	"BTNL3,BTNL8,BTNL9"
TCGA.AA.A00D.01A	5	180326237	180686963	45	-0.2568	NEUTRAL	NA	9	"BTNL3,BTNL8,BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AG.A01W.01A	5	180363376	180620272	37	-0.2266	NEUTRAL	NA	5	"BTNL3,BTNL8,BTNL9,OR2V1,OR2V2"
TCGA.AZ.4684.01A	5	180429620	180686963	41	-0.2918	NEUTRAL	NA	8	"BTNL3,BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AG.A015.01A	5	180430769	180474929	6	-0.1554	NEUTRAL	NA	2	"BTNL3,BTNL9"
TCGA.AH.6549.01A	5	180430769	180686963	39	0.246	NEUTRAL	NA	8	"BTNL3,BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.DM.A28M.01A	5	180431683	180686963	37	0.0339	NEUTRAL	NA	8	"BTNL3,BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AA.A02H.01A	5	180472461	180686963	31	-0.423	NEUTRAL	NA	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AG.3891.01A	5	180474929	180686963	31	0.1068	NEUTRAL	NA	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AA.3509.01A	5	180477046	180686963	34	-0.2181	NEUTRAL	NA	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AG.3906.01A	5	180485264	180686963	26	-0.1184	NEUTRAL	NA	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AA.A010.01A	5	180486290	180686963	26	-0.0893	NEUTRAL	NA	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.DC.6158	5	180606564	180692832	33	0.209	NEUTRAL	NA	4	"GNB2L1,TRIM41,TRIM52,TRIM7"
TCGA.AG.A015.01A	5	180622146	180686963	23	-0.0171	NEUTRAL	NA	4	"GNB2L1,TRIM41,TRIM52,TRIM7"
TCGA.AG.4009.01A	5	180657691	180669147	14	0.0096	NEUTRAL	NA	2	"GNB2L1,TRIM41"
TCGA.EI.6881	5	180678716	180692832	8	0.2393	NEUTRAL	NA	1	TRIM52
TCGA.AA.3968	6	203844	205877	4	-0.3188	NEUTRAL	NA	0	None
TCGA.AF.3911	6	203844	205919	5	-0.1135	NEUTRAL	NA	0	None
TCGA.AA.3860	6	203844	209461	8	-0.408	NEUTRAL	NA	0	None
TCGA.AF.3913	6	203844	209461	8	-0.0905	NEUTRAL	NA	0	None
TCGA.A6.4107	6	203844	215422	11	-0.2435	NEUTRAL	NA	0	None
TCGA.G4.6626	6	203844	215422	11	0.0216	NEUTRAL	NA	0	None
TCGA.D5.6922	6	203844	217200	12	-0.2001	NEUTRAL	NA	0	None
TCGA.AG.A01Y	6	203844	227052	23	-0.3143	NEUTRAL	NA	0	None
TCGA.A6.6142	6	203844	253860	39	0.2037	NEUTRAL	NA	0	None
TCGA.A6.6651	6	203844	253860	39	0.359	NEUTRAL	NA	0	None
TCGA.A6.5666	6	203844	254282	39	0.0178	NEUTRAL	NA	0	None
TCGA.AA.3522	6	203844	254282	40	0.0277	NEUTRAL	NA	0	None
TCGA.AA.3556	6	203844	254282	40	-0.1518	NEUTRAL	NA	0	None
TCGA.AA.3812	6	203844	254282	40	0.2632	NEUTRAL	NA	0	None
TCGA.AA.3866	6	203844	254282	40	-0.1005	NEUTRAL	NA	0	None
TCGA.AD.6901	6	203844	254282	40	-0.0007	NEUTRAL	NA	0	None
TCGA.AG.3612	6	203844	254282	39	0.2912	NEUTRAL	NA	0	None
TCGA.AY.5543	6	203844	254282	40	-0.1521	NEUTRAL	NA	0	None
TCGA.CM.5341	6	203844	254282	40	-0.2808	NEUTRAL	NA	0	None
TCGA.DM.A1D0	6	203844	254282	40	-0.1236	NEUTRAL	NA	0	None
TCGA.DM.A1D9	6	203844	254282	40	-0.0554	NEUTRAL	NA	0	None
TCGA.DM.A28C	6	203844	254282	40	-0.0189	NEUTRAL	NA	0	None
TCGA.EI.6506	6	203844	254282	40	0.0826	NEUTRAL	NA	0	None
TCGA.A6.6781	6	203844	279694	40	-0.1133	NEUTRAL	NA	0	None
TCGA.G4.6314	6	203844	279694	41	-0.1046	NEUTRAL	NA	0	None
TCGA.AG.3591	6	203844	285694	42	0.1443	NEUTRAL	NA	0	None
TCGA.CI.6620	6	203844	285694	42	-0.0708	NEUTRAL	NA	0	None
TCGA.CM.6172	6	203844	285694	42	-0.0459	NEUTRAL	NA	0	None
TCGA.D5.6530	6	203844	285694	42	-0.0225	NEUTRAL	NA	0	None
TCGA.DC.5337	6	203844	285694	42	-0.0044	NEUTRAL	NA	0	None
TCGA.DM.A285	6	203844	285694	42	0.1147	NEUTRAL	NA	0	None
TCGA.NH.A6GB	6	203844	285694	42	0.0181	NEUTRAL	NA	0	None
TCGA.A6.6652	6	203844	303120	44	-0.0866	NEUTRAL	NA	1	DUSP22
TCGA.D5.6535	6	203844	303120	44	-0.0482	NEUTRAL	NA	1	DUSP22
TCGA.NH.A50T	6	203844	303120	44	-0.1359	NEUTRAL	NA	1	DUSP22
TCGA.AD.6965	6	203844	323083	47	-0.0432	NEUTRAL	NA	1	DUSP22
TCGA.A6.A565	6	203844	323325	47	-0.104	NEUTRAL	NA	1	DUSP22
TCGA.AA.3979	6	203844	323325	43	-0.2252	NEUTRAL	NA	1	DUSP22
TCGA.AA.3685	6	203844	328069	49	-0.3402	NEUTRAL	NA	1	DUSP22
TCGA.DC.4745	6	203844	328069	49	-0.2043	NEUTRAL	NA	1	DUSP22
TCGA.DM.A1DB	6	203844	328069	48	-0.0945	NEUTRAL	NA	1	DUSP22
TCGA.F4.6569	6	203844	328069	49	0.2113	NEUTRAL	NA	1	DUSP22
TCGA.AZ.5403	6	203844	334824	51	-0.1346	NEUTRAL	NA	1	DUSP22
TCGA.CM.6679	6	203844	350370	49	-0.13875	NEUTRAL	NA	1	DUSP22
TCGA.AG.3882	6	203844	378702	59	-0.0188	NEUTRAL	NA	1	DUSP22
TCGA.F4.6854	6	203844	641262	191	0.3594	NEUTRAL	NA	3	"DUSP22,EXOC2,IRF4"
TCGA.AA.A01T	6	203844	668698	196	-0.3018	NEUTRAL	NA	4	"DUSP22,EXOC2,HUS1B,IRF4"
TCGA.AD.A5EJ	6	203844	771503	244	0.0211	NEUTRAL	NA	4	"DUSP22,EXOC2,HUS1B,IRF4"
TCGA.A6.6653	6	203844	808659	267	-0.033	NEUTRAL	NA	4	"DUSP22,EXOC2,HUS1B,IRF4"
TCGA.DM.A28A	6	203844	1504121	664	0.0109	NEUTRAL	NA	6	"DUSP22,EXOC2,FOXF2,FOXQ1,HUS1B,IRF4"
TCGA.AZ.4614	6	203844	1628901	728	-0.1299	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AG.4015	6	203844	1678537	757	0.0197	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.T9.A92H	6	203844	1678537	758	0.0064	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AA.3663	6	203844	1825104	830	-0.0074	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AA.3864	6	203844	1833040	833	0.118	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.DM.A28H	6	203844	1908209	860	0.339	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AD.6895	6	203844	1929254	869	-0.072	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AA.3518	6	203844	1949811	878	-0.0263	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AA.3966	6	203844	2021707	904	-0.257	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AM.5821	6	203844	2042091	906	0.0733	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AA.3492	6	203844	2052685	911	-0.0463	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.BM.6198	6	203844	2256626	964	-0.48145	NEUTRAL	NA	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.CL.5917	6	203844	3033626	1329	-0.0034	NEUTRAL	NA	14	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,SERPINB1,SERPINB6,SERPINB9,WRNIP1"
TCGA.DY.A1DG	6	203844	3096037	1357	-0.0109	NEUTRAL	NA	15	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,WRNIP1"
TCGA.AA.3833	6	203844	3280159	1409	-0.036	NEUTRAL	NA	20	"BPHL,DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PSMG4,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.CA.5254	6	203844	4059541	1790	-0.5033	NEUTRAL	NA	23	"BPHL,DUSP22,EXOC2,FAM50B,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.A022	6	203844	4698666	2143	0.0657	NEUTRAL	NA	26	"BPHL,C6orf201,DUSP22,ECI2,EXOC2,FAM217A,FAM50B,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.3850	6	203844	5286305	2414	0.29085	NEUTRAL	NA	31	"BPHL,C6orf201,CDYL,DUSP22,ECI2,EXOC2,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LYRM4,MYLK4,NQO2,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.F5.6465	6	203844	6258629	2933	0.3183	NEUTRAL	NA	33	"BPHL,C6orf201,CDYL,DUSP22,ECI2,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.G4.6299	6	203844	8293935	3944	-0.0562	NEUTRAL	NA	44	"BLOC1S5,BMP6,BPHL,C6orf201,CAGE1,CDYL,DSP,DUSP22,ECI2,EEF1E1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SNRNP48,SSR1,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.3941	6	203844	8342075	3958	-0.0974	NEUTRAL	NA	44	"BLOC1S5,BMP6,BPHL,C6orf201,CAGE1,CDYL,DSP,DUSP22,ECI2,EEF1E1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SNRNP48,SSR1,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.3844	6	203844	8370052	3977	0.0337	NEUTRAL	NA	44	"BLOC1S5,BMP6,BPHL,C6orf201,CAGE1,CDYL,DSP,DUSP22,ECI2,EEF1E1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SNRNP48,SSR1,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AH.6544	6	203844	9989764	4549	0.0162	NEUTRAL	NA	45	"BLOC1S5,BMP6,BPHL,C6orf201,CAGE1,CDYL,DSP,DUSP22,ECI2,EEF1E1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SLC35B3,SNRNP48,SSR1,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.A6.2678	6	203844	10611005	4850	-0.0333	NEUTRAL	NA	47	"BLOC1S5,BMP6,BPHL,C6orf201,CAGE1,CDYL,DSP,DUSP22,ECI2,EEF1E1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GCNT2,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SLC35B3,SNRNP48,SSR1,TFAP2A,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.DM.A1HB	6	203844	14162228	6209	0.0165	NEUTRAL	NA	72	"ADTRP,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CD83,CDYL,DSP,DUSP22,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,HIVEP1,HUS1B,IRF4,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLK4,NEDD9,NOL7,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RIOK1,RIPK1,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.A03J	6	203844	15027129	6598	0.2562	NEUTRAL	NA	72	"ADTRP,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CD83,CDYL,DSP,DUSP22,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,HIVEP1,HUS1B,IRF4,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLK4,NEDD9,NOL7,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RIOK1,RIPK1,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.A03F	6	203844	17096353	7583	0.0014	NEUTRAL	NA	77	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CD83,CDYL,DSP,DTNBP1,DUSP22,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,IRF4,JARID2,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLIP,MYLK4,NEDD9,NOL7,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RIOK1,RIPK1,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.G4.6586	6	203844	17100659	7587	-0.0249	NEUTRAL	NA	77	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CD83,CDYL,DSP,DTNBP1,DUSP22,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,IRF4,JARID2,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLIP,MYLK4,NEDD9,NOL7,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RIOK1,RIPK1,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.D5.6533	6	203844	19125679	8236	0.1567	NEUTRAL	NA	88	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDYL,DEK,DSP,DTNBP1,DUSP22,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AZ.4682	6	203844	19375297	8354	0.3189	NEUTRAL	NA	88	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDYL,DEK,DSP,DTNBP1,DUSP22,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.3811	6	203844	22056681	9333	0.107	NEUTRAL	NA	93	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AD.6899	6	203844	22268828	9410	-0.1072	NEUTRAL	NA	93	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.CM.5348	6	203844	22418770	9507	-0.4916	NEUTRAL	NA	94	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.3977	6	203844	22663521	9631	0.0603	NEUTRAL	NA	95	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HDGFL1,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.3973	6	203844	22741873	9693	0.0322	NEUTRAL	NA	95	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HDGFL1,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.A01S	6	203844	22902739	9743	0.01315	NEUTRAL	NA	95	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HDGFL1,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.3488	6	203844	23294309	9884	0.0097	NEUTRAL	NA	95	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HDGFL1,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.CM.6170	6	203844	24219379	10288	0.1284	NEUTRAL	NA	97	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DCDC2,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HDGFL1,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NRSN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.CM.4746	6	203844	24827690	10501	-0.0124	NEUTRAL	NA	108	Too-Many
TCGA.AA.A01V	6	203844	24947771	10547	0.0128	NEUTRAL	NA	108	Too-Many
TCGA.AD.A5EK	6	203844	25345843	10658	-0.0285	NEUTRAL	NA	109	Too-Many
TCGA.AA.3667	6	203844	26027432	10990	0	NEUTRAL	NA	121	Too-Many
TCGA.A6.6648	6	203844	26691641	11187	-0.2989	NEUTRAL	NA	159	Too-Many
TCGA.A6.6782	6	203844	26818967	11152	-0.0771	NEUTRAL	NA	159	Too-Many
TCGA.AG.3592	6	203844	27080476	11219	-0.0107	NEUTRAL	NA	159	Too-Many
TCGA.AA.3952	6	203844	27121324	11217	0.0237	NEUTRAL	NA	164	Too-Many
TCGA.AA.3688	6	203844	27555125	11309	-0.0184	NEUTRAL	NA	168	Too-Many
TCGA.DC.6682	6	203844	27555125	11294	-0.4529	NEUTRAL	NA	168	Too-Many
TCGA.G4.6294	6	203844	28238968	11452	-0.0011	NEUTRAL	NA	193	Too-Many
TCGA.A6.6138	6	203844	29570840	11780	0.024	NEUTRAL	NA	218	Too-Many
TCGA.CM.5349	6	203844	29841020	11982	0.1814	NEUTRAL	NA	223	Too-Many
TCGA.AA.3526	6	203844	29850273	11979	-0.0385	NEUTRAL	NA	223	Too-Many
TCGA.AG.A026	6	203844	29850273	11972	-0.0003	NEUTRAL	NA	223	Too-Many
TCGA.CM.6680	6	203844	29850273	11962	0.0006	NEUTRAL	NA	223	Too-Many
TCGA.AA.3561	6	203844	29871635	11986	-0.3642	NEUTRAL	NA	223	Too-Many
TCGA.NH.A8F7	6	203844	29871635	11943	0.0082	NEUTRAL	NA	223	Too-Many
TCGA.CI.6621	6	203844	30529621	12243	-0.2792	NEUTRAL	NA	238	Too-Many
TCGA.QG.A5Z1	6	203844	31206615	12461	-0.001	NEUTRAL	NA	264	Too-Many
TCGA.AA.3831	6	203844	31337849	12646	-0.026	NEUTRAL	NA	266	Too-Many
TCGA.EI.7004	6	203844	31794591	12811	0.2897	NEUTRAL	NA	300	Too-Many
TCGA.F5.6464	6	203844	31836150	12837	-0.0279	NEUTRAL	NA	304	Too-Many
TCGA.D5.6929	6	203844	32953710	13245	0.2671	NEUTRAL	NA	345	Too-Many
TCGA.D5.6930	6	203844	32953710	13237	0.0041	NEUTRAL	NA	345	Too-Many
TCGA.G4.6317	6	203844	34529641	13777	-0.2969	NEUTRAL	NA	381	Too-Many
TCGA.D5.6539	6	203844	36157191	14073	0.2837	NEUTRAL	NA	405	Too-Many
TCGA.D5.6538	6	203844	36197372	14094	0.3385	NEUTRAL	NA	406	Too-Many
TCGA.EI.6511	6	203844	36972411	14392	-0.4262	NEUTRAL	NA	420	Too-Many
TCGA.D5.6898	6	203844	37360449	14500	-0.1621	NEUTRAL	NA	425	Too-Many
TCGA.AZ.6599	6	203844	37516377	14570	-0.0243	NEUTRAL	NA	427	Too-Many
TCGA.AZ.6608	6	203844	37985024	14687	0.3495	NEUTRAL	NA	429	Too-Many
TCGA.SS.A7HO	6	203844	38275475	14827	0.0348	NEUTRAL	NA	430	Too-Many
TCGA.DM.A1D7	6	203844	38661930	14947	-0.1135	NEUTRAL	NA	431	Too-Many
TCGA.QL.A97D	6	203844	39070210	15137	0.1871	NEUTRAL	NA	433	Too-Many
TCGA.AF.4110	6	203844	40391563	15727	-0.1956	NEUTRAL	NA	441	Too-Many
TCGA.D5.6531	6	203844	40452053	15774	-0.2267	NEUTRAL	NA	441	Too-Many
TCGA.AA.3666	6	203844	41725273	16310	-0.1384	NEUTRAL	NA	456	Too-Many
TCGA.D5.5540	6	203844	41827192	16315	0	NEUTRAL	NA	460	Too-Many
TCGA.A6.2672	6	203844	44654370	17024	-0.0876	NEUTRAL	NA	520	Too-Many
TCGA.A6.6780	6	203844	44921319	17110	0.0014	NEUTRAL	NA	521	Too-Many
TCGA.AA.3530	6	203844	46151385	17500	0.1009	NEUTRAL	NA	525	Too-Many
TCGA.AZ.4616	6	203844	46629840	17626	-0.0262	NEUTRAL	NA	528	Too-Many
TCGA.AG.3727	6	203844	48492120	18300	0.0287	NEUTRAL	NA	540	Too-Many
TCGA.AA.3867	6	203844	48515645	18287	0.1135	NEUTRAL	NA	540	Too-Many
TCGA.A6.2685	6	203844	48676906	18315	0.0002	NEUTRAL	NA	540	Too-Many
TCGA.AA.3949	6	203844	50259155	18712	-0.0025	NEUTRAL	NA	554	Too-Many
TCGA.A6.2686	6	203844	50465103	18741	-0.3841	NEUTRAL	NA	554	Too-Many
TCGA.A6.6137	6	203844	51087830	18915	-0.0033	NEUTRAL	NA	556	Too-Many
TCGA.G4.6322	6	203844	52517374	19449	-0.002	NEUTRAL	NA	563	Too-Many
TCGA.AG.3881	6	203844	52677590	19509	0.0139	NEUTRAL	NA	566	Too-Many
TCGA.AG.3883	6	203844	53094838	19633	0.2512	NEUTRAL	NA	572	Too-Many
TCGA.AF.A56K	6	203844	54842494	20231	0.0334	NEUTRAL	NA	579	Too-Many
TCGA.NH.A6GA	6	203844	57215493	20886	0.0109	NEUTRAL	NA	591	Too-Many
TCGA.A6.3807	6	203844	57226181	20799	0.0028	NEUTRAL	NA	591	Too-Many
TCGA.G5.6233	6	203844	57227694	20913	0.1988	NEUTRAL	NA	591	Too-Many
TCGA.AA.3848	6	203844	57237179	20925	0.0464	NEUTRAL	NA	591	Too-Many
TCGA.F4.6856	6	203844	57719396	20946	0.0061	NEUTRAL	NA	591	Too-Many
TCGA.AM.5820	6	203844	62507426	21168	0.021	NEUTRAL	NA	593	Too-Many
TCGA.F4.6459	6	203844	63250367	21351	0.3082	NEUTRAL	NA	593	Too-Many
TCGA.CM.5863	6	203844	63621336	21385	0.1022	NEUTRAL	NA	593	Too-Many
TCGA.F4.6704	6	203844	63802354	21422	0.2656	NEUTRAL	NA	593	Too-Many
TCGA.EI.6508	6	203844	66488841	22061	0.014	NEUTRAL	NA	598	Too-Many
TCGA.A6.5667	6	203844	67008285	22218	0.0066	NEUTRAL	NA	598	Too-Many
TCGA.AY.6197	6	203844	67008285	21768	0.0129	NEUTRAL	NA	598	Too-Many
TCGA.D5.7000	6	203844	67008285	22138	-0.0072	NEUTRAL	NA	598	Too-Many
TCGA.CM.6675	6	203844	67956970	22527	0.0287	NEUTRAL	NA	598	Too-Many
TCGA.AA.3494	6	203844	68375895	22706	-0.0106	NEUTRAL	NA	598	Too-Many
TCGA.DM.A1D4	6	203844	68466569	22713	0.0017	NEUTRAL	NA	598	Too-Many
TCGA.A6.5665	6	203844	70739787	23312	0.0124	NEUTRAL	NA	601	Too-Many
TCGA.AA.3560	6	203844	71229658	23567	0.0135	NEUTRAL	NA	603	Too-Many
TCGA.G5.6641	6	203844	71268840	23522	0.1435	NEUTRAL	NA	603	Too-Many
TCGA.F5.6813	6	203844	72443874	23909	0.0117	NEUTRAL	NA	607	Too-Many
TCGA.AZ.6600	6	203844	74675119	24616	0.0607	NEUTRAL	NA	620	Too-Many
TCGA.EI.6512	6	203844	76152988	25028	0.2897	NEUTRAL	NA	624	Too-Many
TCGA.AG.3594	6	203844	76513414	25095	0.0104	NEUTRAL	NA	626	Too-Many
TCGA.DC.6155	6	203844	77415154	25226	0.0129	NEUTRAL	NA	627	Too-Many
TCGA.AG.3725	6	203844	77422496	25337	0.3396	NEUTRAL	NA	627	Too-Many
TCGA.CM.5860	6	203844	78962625	25777	0.2661	NEUTRAL	NA	629	Too-Many
TCGA.DM.A0XD	6	203844	78962625	25718	0.0026	NEUTRAL	NA	629	Too-Many
TCGA.DM.A1HA	6	203844	78962625	25815	-0.0103	NEUTRAL	NA	629	Too-Many
TCGA.G4.6310	6	203844	78962625	25811	0.1562	NEUTRAL	NA	629	Too-Many
TCGA.D5.6931	6	203844	79026685	25766	0.0057	NEUTRAL	NA	629	Too-Many
TCGA.G4.6303	6	203844	84228463	27353	-0.0071	NEUTRAL	NA	647	Too-Many
TCGA.F4.6460	6	203844	88215552	28447	0.1656	NEUTRAL	NA	664	Too-Many
TCGA.CL.4957	6	203844	88255715	28458	0.0102	NEUTRAL	NA	665	Too-Many
TCGA.CM.5868	6	203844	88628863	28514	-0.0187	NEUTRAL	NA	667	Too-Many
TCGA.DC.5869	6	203844	90631131	29094	0.3347	NEUTRAL	NA	682	Too-Many
TCGA.G4.6302	6	203844	91126463	29323	0.0003	NEUTRAL	NA	683	Too-Many
TCGA.AY.4070	6	203844	92269525	29656	0.084	NEUTRAL	NA	684	Too-Many
TCGA.CM.6169	6	203844	93305455	29936	0.1549	NEUTRAL	NA	684	Too-Many
TCGA.5M.AAT5	6	203844	93566102	30170	0.0474	NEUTRAL	NA	684	Too-Many
TCGA.AY.A71X	6	203844	94491307	30482	-0.0067	NEUTRAL	NA	685	Too-Many
TCGA.AG.3893	6	203844	95509860	30557	0.0157	NEUTRAL	NA	685	Too-Many
TCGA.D5.6932	6	203844	95841231	30765	0.0694	NEUTRAL	NA	685	Too-Many
TCGA.AA.3531	6	203844	96605224	31047	0.0207	NEUTRAL	NA	687	Too-Many
TCGA.EI.6881	6	203844	97934983	31348	0.0206	NEUTRAL	NA	693	Too-Many
TCGA.EI.7002	6	203844	99691339	31811	0.0051	NEUTRAL	NA	695	Too-Many
TCGA.AG.3728	6	203844	105569694	33499	0.3307	NEUTRAL	NA	709	Too-Many
TCGA.DC.6158	6	203844	110389925	34921	0.0197	NEUTRAL	NA	739	Too-Many
TCGA.CM.4747	6	203844	114214824	36128	0.0045	NEUTRAL	NA	759	Too-Many
TCGA.AU.6004	6	203844	124675245	38695	0.0182	NEUTRAL	NA	800	Too-Many
TCGA.AG.3574	6	203844	128213907	39946	0	NEUTRAL	NA	815	Too-Many
TCGA.CM.6164	6	203844	128724887	40004	-0.1586	NEUTRAL	NA	816	Too-Many
TCGA.F5.6814	6	203844	128767224	39986	0.0211	NEUTRAL	NA	816	Too-Many
TCGA.AG.4008	6	203844	129710675	40106	0	NEUTRAL	NA	817	Too-Many
TCGA.AA.3842	6	203844	131182185	40948	0	NEUTRAL	NA	824	Too-Many
TCGA.AA.3841	6	203844	131313415	41030	-0.3716	NEUTRAL	NA	824	Too-Many
TCGA.AG.3890	6	203844	140545113	43924	-0.0083	NEUTRAL	NA	879	Too-Many
TCGA.G4.6311	6	203844	143863991	44899	0.2243	NEUTRAL	NA	887	Too-Many
TCGA.AA.3680	6	203844	144662229	45204	-0.002	NEUTRAL	NA	894	Too-Many
TCGA.AH.6644	6	203844	146320340	45537	0.2568	NEUTRAL	NA	897	Too-Many
TCGA.AH.6643	6	203844	146816018	45674	0	NEUTRAL	NA	898	Too-Many
TCGA.AF.5654	6	203844	147846574	45962	0	NEUTRAL	NA	902	Too-Many
TCGA.DC.6157	6	203844	150257359	46537	0.2049	NEUTRAL	NA	916	Too-Many
TCGA.AA.3814	6	203844	152766765	48025	0.3328	NEUTRAL	NA	931	Too-Many
TCGA.AG.3898	6	203844	156139188	49019	0.0216	NEUTRAL	NA	944	Too-Many
TCGA.AG.3901	6	203844	156139188	49078	-0.0267	NEUTRAL	NA	944	Too-Many
TCGA.AA.3692	6	203844	156418694	49365	-0.2052	NEUTRAL	NA	944	Too-Many
TCGA.F4.6461	6	203844	157044831	49463	0.0078	NEUTRAL	NA	944	Too-Many
TCGA.CK.5915	6	203844	157250427	49546	-0.2369	NEUTRAL	NA	945	Too-Many
TCGA.AA.3872	6	203844	157724007	49726	0.104	NEUTRAL	NA	946	Too-Many
TCGA.A6.5661	6	203844	157761084	49634	0.0395	NEUTRAL	NA	946	Too-Many
TCGA.AA.3664	6	203844	161444151	51108	-0.0091	NEUTRAL	NA	974	Too-Many
TCGA.AZ.6598	6	203844	161769834	51225	0.0082	NEUTRAL	NA	976	Too-Many
TCGA.A6.5656	6	203844	161933934	51062	0.0088	NEUTRAL	NA	976	Too-Many
TCGA.F5.6863	6	203844	161990515	51227	-0.0045	NEUTRAL	NA	976	Too-Many
TCGA.AY.A8YK	6	203844	162081762	51372	-0.0744	NEUTRAL	NA	976	Too-Many
TCGA.AZ.6603	6	203844	162166162	51301	0	NEUTRAL	NA	976	Too-Many
TCGA.F5.6812	6	203844	162201369	51337	0.0349	NEUTRAL	NA	976	Too-Many
TCGA.AA.3955	6	203844	162228017	51426	0.3354	NEUTRAL	NA	976	Too-Many
TCGA.AZ.6607	6	203844	162271942	51313	-0.4303	NEUTRAL	NA	976	Too-Many
TCGA.AA.3693	6	203844	162303107	51513	-0.0054	NEUTRAL	NA	976	Too-Many
TCGA.A6.6650	6	203844	162307272	47009	0.288	NEUTRAL	NA	976	Too-Many
TCGA.CA.6715	6	203844	162319144	51291	0.007	NEUTRAL	NA	976	Too-Many
TCGA.AZ.4308	6	203844	162340949	51496	0.0104	NEUTRAL	NA	976	Too-Many
TCGA.AA.3971	6	203844	162374887	51509	-0.0158	NEUTRAL	NA	976	Too-Many
TCGA.AD.6548	6	203844	162387503	51337	0.0143	NEUTRAL	NA	976	Too-Many
TCGA.CM.5862	6	203844	162410131	51425	0.1843	NEUTRAL	NA	976	Too-Many
TCGA.AA.3529	6	203844	162429999	51523	0.0086	NEUTRAL	NA	976	Too-Many
TCGA.AY.A69D	6	203844	162459761	51519	0	NEUTRAL	NA	976	Too-Many
TCGA.AD.6963	6	203844	162511028	51534	0.0658	NEUTRAL	NA	976	Too-Many
TCGA.A6.2675	6	203844	162513435	51163	0.1417	NEUTRAL	NA	976	Too-Many
TCGA.A6.4105	6	203844	162529566	51586	0.0182	NEUTRAL	NA	976	Too-Many
TCGA.AA.3511	6	203844	162551098	51456	0.0346	NEUTRAL	NA	976	Too-Many
TCGA.CM.6161	6	203844	162672820	51551	-0.0133	NEUTRAL	NA	976	Too-Many
TCGA.5M.AATE	6	203844	162690884	51654	0.0157	NEUTRAL	NA	976	Too-Many
TCGA.AA.3989	6	203844	162690884	51635	0.0925	NEUTRAL	NA	976	Too-Many
TCGA.AA.3818	6	203844	162726826	51685	-0.0006	NEUTRAL	NA	976	Too-Many
TCGA.F5.6864	6	203844	162779000	51595	0.0021	NEUTRAL	NA	976	Too-Many
TCGA.AU.3779	6	203844	162791197	51684	0.056	NEUTRAL	NA	976	Too-Many
TCGA.CI.6624	6	203844	162875588	51631	0	NEUTRAL	NA	976	Too-Many
TCGA.AG.3742	6	203844	162967095	51453	0.007	NEUTRAL	NA	976	Too-Many
TCGA.5M.AAT4	6	203844	162979146	51778	0.013	NEUTRAL	NA	976	Too-Many
TCGA.F5.6810	6	203844	163153372	51744	0.2138	NEUTRAL	NA	977	Too-Many
TCGA.AG.3896	6	203844	167030619	53407	0.3255	NEUTRAL	NA	985	Too-Many
TCGA.A6.2677	6	203844	168074628	49308	-0.0188	NEUTRAL	NA	993	Too-Many
TCGA.CM.4743	6	203844	168106115	53935	0.0139	NEUTRAL	NA	993	Too-Many
TCGA.3L.AA1B	6	203844	170918030	55004	-0.0463	NEUTRAL	NA	1010	Too-Many
TCGA.4N.A93T	6	203844	170918030	55033	0.0035	NEUTRAL	NA	1010	Too-Many
TCGA.4T.AA8H	6	203844	170918030	55020	0	NEUTRAL	NA	1010	Too-Many
TCGA.5M.AAT6	6	203844	170918030	55025	0	NEUTRAL	NA	1010	Too-Many
TCGA.5M.AATA	6	203844	170918030	55003	-0.1907	NEUTRAL	NA	1010	Too-Many
TCGA.A6.2671	6	203844	170918030	54978	-0.2238	NEUTRAL	NA	1010	Too-Many
TCGA.A6.2674	6	203844	170918030	55020	0.0819	NEUTRAL	NA	1010	Too-Many
TCGA.A6.2679	6	203844	170918030	54986	0.1372	NEUTRAL	NA	1010	Too-Many
TCGA.A6.2680	6	203844	170918030	54959	0.0033	NEUTRAL	NA	1010	Too-Many
TCGA.A6.2681	6	203844	170918030	55015	-0.0683	NEUTRAL	NA	1010	Too-Many
TCGA.A6.2682	6	203844	170918030	54050	-0.0186	NEUTRAL	NA	1010	Too-Many
TCGA.A6.2683	6	203844	170918030	54961	0.0271	NEUTRAL	NA	1010	Too-Many
TCGA.A6.2684	6	203844	170918030	50316	0.0118	NEUTRAL	NA	1010	Too-Many
TCGA.A6.3809	6	203844	170918030	50336	0.0127	NEUTRAL	NA	1010	Too-Many
TCGA.A6.5657	6	203844	170918030	54889	0.0104	NEUTRAL	NA	1010	Too-Many
TCGA.A6.5659	6	203844	170918030	50287	0.1988	NEUTRAL	NA	1010	Too-Many
TCGA.A6.5660	6	203844	170918030	54835	0.0825	NEUTRAL	NA	1010	Too-Many
TCGA.A6.5662	6	203844	170918030	54859	-0.0002	NEUTRAL	NA	1010	Too-Many
TCGA.A6.5664	6	203844	170918030	54874	0.0017	NEUTRAL	NA	1010	Too-Many
TCGA.A6.6140	6	203844	170918030	55043	-0.0248	NEUTRAL	NA	1010	Too-Many
TCGA.A6.6141	6	203844	170918030	54988	0.0022	NEUTRAL	NA	1010	Too-Many
TCGA.A6.6649	6	203844	170918030	55032	-0.1299	NEUTRAL	NA	1010	Too-Many
TCGA.A6.6654	6	203844	170918030	54881	0.0762	NEUTRAL	NA	1010	Too-Many
TCGA.A6.A566	6	203844	170918030	54583	-0.0064	NEUTRAL	NA	1010	Too-Many
TCGA.A6.A567	6	203844	170918030	54626	0.0189	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3489	6	203844	170918030	54843	-0.0092	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3495	6	203844	170918030	55016	-0.0024	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3496	6	203844	170918030	54852	-0.0159	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3502	6	203844	170918030	55000	0.0181	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3510	6	203844	170918030	55001	-0.003	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3514	6	203844	170918030	55006	0.002	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3516	6	203844	170918030	54958	0.0061	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3517	6	203844	170918030	54977	0.0338	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3519	6	203844	170918030	55020	0.0243	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3524	6	203844	170918030	54995	0.0125	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3527	6	203844	170918030	55006	0.0095	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3532	6	203844	170918030	55002	0.3093	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3543	6	203844	170918030	54992	0.0088	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3544	6	203844	170918030	55036	-0.0259	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3548	6	203844	170918030	55039	-0.0147	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3549	6	203844	170918030	55040	0.0101	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3555	6	203844	170918030	55047	0.001	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3558	6	203844	170918030	55043	0	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3660	6	203844	170918030	55026	-0.0186	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3662	6	203844	170918030	55024	0.0287	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3673	6	203844	170918030	55050	-0.0058	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3675	6	203844	170918030	55060	0.0026	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3678	6	203844	170918030	55059	0.0098	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3681	6	203844	170918030	55045	-0.0021	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3684	6	203844	170918030	55058	-0.0059	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3695	6	203844	170918030	55065	0.0143	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3696	6	203844	170918030	55062	-0.0089	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3710	6	203844	170918030	54999	0.0059	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3712	6	203844	170918030	55029	-0.0002	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3713	6	203844	170918030	54999	0.0119	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3715	6	203844	170918030	55061	-0.1137	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3819	6	203844	170918030	55058	0	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3821	6	203844	170918030	54951	0.0094	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3837	6	203844	170918030	55064	-0.3102	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3845	6	203844	170918030	54918	-0.0035	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3846	6	203844	170918030	54960	0.2845	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3851	6	203844	170918030	54943	0	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3852	6	203844	170918030	55063	0.0059	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3855	6	203844	170918030	54957	0.0043	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3856	6	203844	170918030	55060	-0.0077	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3869	6	203844	170918030	54983	0.3232	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3875	6	203844	170918030	55065	-0.1797	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3877	6	203844	170918030	55007	0	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3947	6	203844	170918030	54935	-0.0059	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3950	6	203844	170918030	55001	0	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3956	6	203844	170918030	54963	-0.0111	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3972	6	203844	170918030	54992	-0.0401	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3975	6	203844	170918030	54935	0	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3976	6	203844	170918030	54996	-0.0107	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3984	6	203844	170918030	54973	0.3011	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3986	6	203844	170918030	54994	-0.003	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3994	6	203844	170918030	54954	0	NEUTRAL	NA	1010	Too-Many
TCGA.AA.A01P	6	203844	170918030	54983	0.0143	NEUTRAL	NA	1010	Too-Many
TCGA.AA.A01X	6	203844	170918030	54949	-0.394	NEUTRAL	NA	1010	Too-Many
TCGA.AA.A01Z	6	203844	170918030	54997	0.0026	NEUTRAL	NA	1010	Too-Many
TCGA.AA.A02O	6	203844	170918030	55019	-0.0102	NEUTRAL	NA	1010	Too-Many
TCGA.AA.A02Y	6	203844	170918030	54998	0	NEUTRAL	NA	1010	Too-Many
TCGA.AD.5900	6	203844	170918030	54916	0.0266	NEUTRAL	NA	1010	Too-Many
TCGA.AD.6888	6	203844	170918030	54966	-0.0061	NEUTRAL	NA	1010	Too-Many
TCGA.AD.6889	6	203844	170918030	54962	0.014	NEUTRAL	NA	1010	Too-Many
TCGA.AD.6890	6	203844	170918030	54971	0	NEUTRAL	NA	1010	Too-Many
TCGA.AD.6964	6	203844	170918030	54970	0.0168	NEUTRAL	NA	1010	Too-Many
TCGA.AF.2687	6	203844	170918030	54864	0.2729	NEUTRAL	NA	1010	Too-Many
TCGA.AF.2689	6	203844	170918030	54988	0.0043	NEUTRAL	NA	1010	Too-Many
TCGA.AF.2690	6	203844	170918030	55041	-0.2078	NEUTRAL	NA	1010	Too-Many
TCGA.AF.2691	6	203844	170918030	55017	-0.0071	NEUTRAL	NA	1010	Too-Many
TCGA.AF.2692	6	203844	170918030	55042	-0.4034	NEUTRAL	NA	1010	Too-Many
TCGA.AF.6136	6	203844	170918030	54946	0.231	NEUTRAL	NA	1010	Too-Many
TCGA.AF.6655	6	203844	170918030	54902	0	NEUTRAL	NA	1010	Too-Many
TCGA.AF.6672	6	203844	170918030	54915	0	NEUTRAL	NA	1010	Too-Many
TCGA.AF.A56L	6	203844	170918030	54916	0.0892	NEUTRAL	NA	1010	Too-Many
TCGA.AF.A56N	6	203844	170918030	54916	-0.0032	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3580	6	203844	170918030	55039	0.0008	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3581	6	203844	170918030	55026	0.0064	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3583	6	203844	170918030	53600	0.0058	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3599	6	203844	170918030	55000	0.0021	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3726	6	203844	170918030	55015	-0.0026	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3731	6	203844	170918030	55036	-0.0044	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3732	6	203844	170918030	54898	0.0024	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3878	6	203844	170918030	55056	-0.0117	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3885	6	203844	170918030	55046	0	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3887	6	203844	170918030	54820	0.0062	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3892	6	203844	170918030	54869	0.0037	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3894	6	203844	170918030	54856	0.0035	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3902	6	203844	170918030	54878	-0.0027	NEUTRAL	NA	1010	Too-Many
TCGA.AG.4022	6	203844	170918030	55040	0.2221	NEUTRAL	NA	1010	Too-Many
TCGA.AG.A020	6	203844	170918030	54958	0.0145	NEUTRAL	NA	1010	Too-Many
TCGA.AG.A02N	6	203844	170918030	54982	0.0021	NEUTRAL	NA	1010	Too-Many
TCGA.AH.6547	6	203844	170918030	54954	0	NEUTRAL	NA	1010	Too-Many
TCGA.AH.6897	6	203844	170918030	54918	0	NEUTRAL	NA	1010	Too-Many
TCGA.AH.6903	6	203844	170918030	54917	-0.0001	NEUTRAL	NA	1010	Too-Many
TCGA.AY.4071	6	203844	170918030	54754	0.1101	NEUTRAL	NA	1010	Too-Many
TCGA.AY.6386	6	203844	170918030	55011	0.0113	NEUTRAL	NA	1010	Too-Many
TCGA.AZ.4315	6	203844	170918030	54991	0	NEUTRAL	NA	1010	Too-Many
TCGA.AZ.4323	6	203844	170918030	54834	0	NEUTRAL	NA	1010	Too-Many
TCGA.AZ.4615	6	203844	170918030	55002	0.005	NEUTRAL	NA	1010	Too-Many
TCGA.AZ.4681	6	203844	170918030	54992	5.00E-04	NEUTRAL	NA	1010	Too-Many
TCGA.AZ.5407	6	203844	170918030	55027	0.0087	NEUTRAL	NA	1010	Too-Many
TCGA.AZ.6601	6	203844	170918030	55025	0.0028	NEUTRAL	NA	1010	Too-Many
TCGA.AZ.6605	6	203844	170918030	54834	0.0186	NEUTRAL	NA	1010	Too-Many
TCGA.AZ.6606	6	203844	170918030	54854	-0.0015	NEUTRAL	NA	1010	Too-Many
TCGA.CA.5255	6	203844	170918030	54842	-0.1771	NEUTRAL	NA	1010	Too-Many
TCGA.CA.5256	6	203844	170918030	54632	-0.2479	NEUTRAL	NA	1010	Too-Many
TCGA.CA.5796	6	203844	170918030	54913	-0.0173	NEUTRAL	NA	1010	Too-Many
TCGA.CA.5797	6	203844	170918030	54969	0	NEUTRAL	NA	1010	Too-Many
TCGA.CA.6716	6	203844	170918030	54913	0.0109	NEUTRAL	NA	1010	Too-Many
TCGA.CA.6717	6	203844	170918030	54796	0.0082	NEUTRAL	NA	1010	Too-Many
TCGA.CA.6718	6	203844	170918030	54844	0.0736	NEUTRAL	NA	1010	Too-Many
TCGA.CI.6619	6	203844	170918030	54928	0.1301	NEUTRAL	NA	1010	Too-Many
TCGA.CI.6622	6	203844	170918030	54895	-0.0007	NEUTRAL	NA	1010	Too-Many
TCGA.CI.6623	6	203844	170918030	54927	0.1172	NEUTRAL	NA	1010	Too-Many
TCGA.CK.4947	6	203844	170918030	54950	0.0234	NEUTRAL	NA	1010	Too-Many
TCGA.CK.4950	6	203844	170918030	54529	0.0009	NEUTRAL	NA	1010	Too-Many
TCGA.CK.4951	6	203844	170918030	54777	-0.0001	NEUTRAL	NA	1010	Too-Many
TCGA.CK.5912	6	203844	170918030	54812	0	NEUTRAL	NA	1010	Too-Many
TCGA.CK.5913	6	203844	170918030	54952	0.0041	NEUTRAL	NA	1010	Too-Many
TCGA.CK.5916	6	203844	170918030	54909	0.0066	NEUTRAL	NA	1010	Too-Many
TCGA.CK.6746	6	203844	170918030	54860	0.0054	NEUTRAL	NA	1010	Too-Many
TCGA.CK.6747	6	203844	170918030	54800	0.0046	NEUTRAL	NA	1010	Too-Many
TCGA.CK.6748	6	203844	170918030	54923	0.0145	NEUTRAL	NA	1010	Too-Many
TCGA.CK.6751	6	203844	170918030	54714	0.0017	NEUTRAL	NA	1010	Too-Many
TCGA.CL.5918	6	203844	170918030	54912	0	NEUTRAL	NA	1010	Too-Many
TCGA.CM.4748	6	203844	170918030	55024	-0.0013	NEUTRAL	NA	1010	Too-Many
TCGA.CM.4752	6	203844	170918030	54980	0.1852	NEUTRAL	NA	1010	Too-Many
TCGA.CM.5344	6	203844	170918030	55007	0.0553	NEUTRAL	NA	1010	Too-Many
TCGA.CM.5861	6	203844	170918030	54948	0.0013	NEUTRAL	NA	1010	Too-Many
TCGA.CM.5864	6	203844	170918030	54919	0.1667	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6162	6	203844	170918030	54815	0.0249	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6163	6	203844	170918030	54808	-0.1051	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6166	6	203844	170918030	55032	0.0046	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6167	6	203844	170918030	55015	-0.012	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6168	6	203844	170918030	55021	0.0046	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6171	6	203844	170918030	55034	0.0056	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6674	6	203844	170918030	54877	0.0038	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6676	6	203844	170918030	54822	-0.0995	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6677	6	203844	170918030	54796	0.0018	NEUTRAL	NA	1010	Too-Many
TCGA.CM.6678	6	203844	170918030	54877	-0.1502	NEUTRAL	NA	1010	Too-Many
TCGA.D5.5537	6	203844	170918030	54909	-0.3949	NEUTRAL	NA	1010	Too-Many
TCGA.D5.5538	6	203844	170918030	54984	0.006	NEUTRAL	NA	1010	Too-Many
TCGA.D5.5539	6	203844	170918030	54987	0.2696	NEUTRAL	NA	1010	Too-Many
TCGA.D5.5541	6	203844	170918030	55024	0.1099	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6529	6	203844	170918030	55027	-0.1666	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6532	6	203844	170918030	54979	0.0053	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6534	6	203844	170918030	54883	-0.0061	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6537	6	203844	170918030	54655	-0.0063	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6540	6	203844	170918030	54897	0.0003	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6541	6	203844	170918030	55032	0.0026	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6920	6	203844	170918030	54909	0.0079	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6923	6	203844	170918030	54883	0.0028	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6924	6	203844	170918030	54921	-0.0226	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6926	6	203844	170918030	54928	0.0804	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6927	6	203844	170918030	54936	0.0012	NEUTRAL	NA	1010	Too-Many
TCGA.D5.6928	6	203844	170918030	54921	-0.0023	NEUTRAL	NA	1010	Too-Many
TCGA.DC.4749	6	203844	170918030	55046	0.0139	NEUTRAL	NA	1010	Too-Many
TCGA.DC.6681	6	203844	170918030	54913	-0.0144	NEUTRAL	NA	1010	Too-Many
TCGA.DC.6683	6	203844	170918030	54897	-0.0656	NEUTRAL	NA	1010	Too-Many
TCGA.DM.A0X9	6	203844	170918030	55009	0.0015	NEUTRAL	NA	1010	Too-Many
TCGA.DM.A0XF	6	203844	170918030	55008	0.0079	NEUTRAL	NA	1010	Too-Many
TCGA.DM.A1D8	6	203844	170918030	54940	0.0054	NEUTRAL	NA	1010	Too-Many
TCGA.DM.A280	6	203844	170918030	54917	-0.01	NEUTRAL	NA	1010	Too-Many
TCGA.DM.A28E	6	203844	170918030	54871	0	NEUTRAL	NA	1010	Too-Many
TCGA.DM.A28G	6	203844	170918030	54937	-0.0028	NEUTRAL	NA	1010	Too-Many
TCGA.DY.A0XA	6	203844	170918030	54956	0.0089	NEUTRAL	NA	1010	Too-Many
TCGA.DY.A1DC	6	203844	170918030	54850	0.0053	NEUTRAL	NA	1010	Too-Many
TCGA.DY.A1DD	6	203844	170918030	55020	0.0069	NEUTRAL	NA	1010	Too-Many
TCGA.DY.A1H8	6	203844	170918030	55019	-0.0081	NEUTRAL	NA	1010	Too-Many
TCGA.EF.5830	6	203844	170918030	54922	0	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6507	6	203844	170918030	55025	0.0109	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6509	6	203844	170918030	55037	0.0179	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6510	6	203844	170918030	54894	0.0067	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6513	6	203844	170918030	55047	0.0075	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6514	6	203844	170918030	54967	0	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6882	6	203844	170918030	54928	0.007	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6884	6	203844	170918030	54879	0.0015	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6885	6	203844	170918030	54905	-0.0097	NEUTRAL	NA	1010	Too-Many
TCGA.EI.6917	6	203844	170918030	54878	0.0123	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6463	6	203844	170918030	55010	0.0039	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6570	6	203844	170918030	55033	0.0036	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6703	6	203844	170918030	54911	0.0212	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6805	6	203844	170918030	54916	0	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6806	6	203844	170918030	54775	0.004	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6807	6	203844	170918030	54867	0.0162	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6808	6	203844	170918030	54911	-0.0796	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6809	6	203844	170918030	54901	0	NEUTRAL	NA	1010	Too-Many
TCGA.F4.6855	6	203844	170918030	54882	-0.0106	NEUTRAL	NA	1010	Too-Many
TCGA.F5.6571	6	203844	170918030	54920	0.0738	NEUTRAL	NA	1010	Too-Many
TCGA.F5.6702	6	203844	170918030	54803	0.1283	NEUTRAL	NA	1010	Too-Many
TCGA.F5.6861	6	203844	170918030	54909	0.0002	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6293	6	203844	170918030	54998	0.0163	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6295	6	203844	170918030	55041	0.0208	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6298	6	203844	170918030	55027	-0.0016	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6304	6	203844	170918030	54926	0.0099	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6306	6	203844	170918030	55015	0.0036	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6307	6	203844	170918030	55031	0	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6309	6	203844	170918030	54919	0.0074	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6315	6	203844	170918030	55037	0.0113	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6320	6	203844	170918030	55039	0.0035	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6321	6	203844	170918030	55027	0.0017	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6323	6	203844	170918030	55023	0	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6588	6	203844	170918030	55030	0.0139	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6625	6	203844	170918030	55029	0.2275	NEUTRAL	NA	1010	Too-Many
TCGA.G4.6628	6	203844	170918030	54873	0.0024	NEUTRAL	NA	1010	Too-Many
TCGA.G5.6235	6	203844	170918030	55039	-0.0089	NEUTRAL	NA	1010	Too-Many
TCGA.G5.6572	6	203844	170918030	54921	-0.0031	NEUTRAL	NA	1010	Too-Many
TCGA.NH.A50U	6	203844	170918030	55008	0.1869	NEUTRAL	NA	1010	Too-Many
TCGA.NH.A50V	6	203844	170918030	54695	0.0118	NEUTRAL	NA	1010	Too-Many
TCGA.NH.A5IV	6	203844	170918030	54905	-0.0057	NEUTRAL	NA	1010	Too-Many
TCGA.NH.A6GC	6	203844	170918030	54985	0.3025	NEUTRAL	NA	1010	Too-Many
TCGA.NH.A8F8	6	203844	170918030	55026	0.0008	NEUTRAL	NA	1010	Too-Many
TCGA.QG.A5YV	6	203844	170918030	54612	0.0135	NEUTRAL	NA	1010	Too-Many
TCGA.QG.A5YW	6	203844	170918030	54697	0.2904	NEUTRAL	NA	1010	Too-Many
TCGA.QG.A5YX	6	203844	170918030	54552	0.0055	NEUTRAL	NA	1010	Too-Many
TCGA.QG.A5Z2	6	203844	170918030	54597	0.0122	NEUTRAL	NA	1010	Too-Many
TCGA.RU.A8FL	6	203844	170918030	55000	0.2484	NEUTRAL	NA	1010	Too-Many
TCGA.WS.AB45	6	203844	170918030	55010	0	NEUTRAL	NA	1010	Too-Many
TCGA.AG.3575	6	205919	30577965	12272	0.0076	NEUTRAL	NA	240	Too-Many
TCGA.AA.3968	6	205919	86474367	27989	0.3549	NEUTRAL	NA	656	Too-Many
TCGA.DM.A1D6	6	205919	163430236	51889	0	NEUTRAL	NA	977	Too-Many
TCGA.AF.3911	6	205946	57206229	20905	0.3323	NEUTRAL	NA	591	Too-Many
TCGA.AA.3854	6	205946	134787862	42234	0.0044	NEUTRAL	NA	850	Too-Many
TCGA.AA.3860	6	210814	63653343	21426	0.0248	NEUTRAL	NA	593	Too-Many
TCGA.AF.3913	6	210814	170918030	54841	0.3214	NEUTRAL	NA	1010	Too-Many
TCGA.A6.4107	6	217200	254282	29	0.196	NEUTRAL	NA	0	None
TCGA.G4.6626	6	217200	24947771	10540	0.3382	NEUTRAL	NA	108	Too-Many
TCGA.D5.6922	6	217333	81729084	26583	0.2221	NEUTRAL	NA	638	Too-Many
TCGA.AG.A01Y	6	227384	75444102	24761	0.0025	NEUTRAL	NA	620	Too-Many
TCGA.F5.6811.01A	6	237464	56037256	4248	0.0302	NEUTRAL	NA	584	Too-Many
TCGA.DC.6160.01A	6	237464	73166882	4712	0.0792	NEUTRAL	NA	608	Too-Many
TCGA.AG.A01W.01A	6	237465	31583105	1372	-0.0139	NEUTRAL	NA	278	Too-Many
TCGA.AG.A036.01A	6	237465	170734557	8491	0.1947	NEUTRAL	NA	1007	Too-Many
TCGA.A6.6142	6	254282	355197	17	-0.4633	NEUTRAL	NA	1	DUSP22
TCGA.A6.6651	6	254282	389318	27	-0.1938	NEUTRAL	NA	1	DUSP22
TCGA.EI.6506	6	279694	384545	20	-0.4734	NEUTRAL	NA	1	DUSP22
TCGA.AA.3812	6	279694	385055	24	-0.298	NEUTRAL	NA	1	DUSP22
TCGA.AG.3611.01A	6	292464	350759	8	0.0551	NEUTRAL	NA	1	DUSP22
TCGA.AA.A010.01A	6	292464	393116	9	-0.2196	NEUTRAL	NA	2	"DUSP22,IRF4"
TCGA.AA.A01Q.01A	6	292464	610042	36	-0.3881	NEUTRAL	NA	3	"DUSP22,EXOC2,IRF4"
TCGA.AA.3980.01A	6	292464	637652	41	0.0144	NEUTRAL	NA	3	"DUSP22,EXOC2,IRF4"
TCGA.AG.3891.01A	6	292464	1312939	43	-0.127	NEUTRAL	NA	5	"DUSP22,EXOC2,FOXQ1,HUS1B,IRF4"
TCGA.CM.6165.01A	6	292464	1390663	45	0.0306	NEUTRAL	NA	6	"DUSP22,EXOC2,FOXF2,FOXQ1,HUS1B,IRF4"
TCGA.A6.3810.01A	6	292464	1610634	47	0.2856	NEUTRAL	NA	6	"DUSP22,EXOC2,FOXF2,FOXQ1,HUS1B,IRF4"
TCGA.AA.A00F.01A	6	292464	2833870	74	0.2648	NEUTRAL	NA	11	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,SERPINB1,WRNIP1"
TCGA.AA.A024.01A	6	292464	2900628	86	-0.0899	NEUTRAL	NA	12	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,SERPINB1,SERPINB9,WRNIP1"
TCGA.AA.A00D.01A	6	292464	3077026	97	-0.0259	NEUTRAL	NA	14	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,SERPINB1,SERPINB6,SERPINB9,WRNIP1"
TCGA.AA.3862.01A	6	292464	3739013	148	-0.2593	NEUTRAL	NA	21	"BPHL,DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.A00Q.01A	6	292464	4021584	139	-0.0413	NEUTRAL	NA	23	"BPHL,DUSP22,EXOC2,FAM50B,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.A6.3808.01A	6	292464	5002303	204	-0.3255	NEUTRAL	NA	28	"BPHL,C6orf201,CDYL,DUSP22,ECI2,EXOC2,FAM217A,FAM50B,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.3509.01A	6	292464	7298114	257	-0.1088	NEUTRAL	NA	36	"BPHL,C6orf201,CDYL,DUSP22,ECI2,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SSR1,TUBB2A,TUBB2B,WRNIP1"
TCGA.AZ.4684.01A	6	292464	7298114	257	0.0349	NEUTRAL	NA	36	"BPHL,C6orf201,CDYL,DUSP22,ECI2,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SSR1,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.A00A.01A	6	292464	7405435	241	-0.0896	NEUTRAL	NA	38	"BPHL,C6orf201,CAGE1,CDYL,DUSP22,ECI2,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SSR1,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.3815.01A	6	292464	15533443	580	-0.0209	NEUTRAL	NA	74	"ADTRP,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CD83,CDYL,DSP,DTNBP1,DUSP22,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,HIVEP1,HUS1B,IRF4,JARID2,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLK4,NEDD9,NOL7,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RIOK1,RIPK1,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.A00L.01A	6	292464	22290353	643	-0.0909	NEUTRAL	NA	94	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.3861.01A	6	292464	25801077	968	-0.2644	NEUTRAL	NA	114	Too-Many
TCGA.AA.3930.01A	6	292464	25983410	1001	0.2839	NEUTRAL	NA	117	Too-Many
TCGA.AA.A01F.01A	6	292464	29555692	1002	0.0675	NEUTRAL	NA	217	Too-Many
TCGA.AA.3967.01A	6	292464	30539210	1277	-0.2374	NEUTRAL	NA	239	Too-Many
TCGA.AA.3939.01A	6	292464	30622935	1426	-0.2278	NEUTRAL	NA	244	Too-Many
TCGA.DM.A28M.01A	6	292464	31996675	1871	0.151	NEUTRAL	NA	317	Too-Many
TCGA.CK.4948.01B	6	292464	32847140	2083	-0.12	NEUTRAL	NA	342	Too-Many
TCGA.AG.A01N.01A	6	292464	38654613	2624	-0.0984	NEUTRAL	NA	431	Too-Many
TCGA.AH.6549.01A	6	292464	42712730	3252	0.2593	NEUTRAL	NA	472	Too-Many
TCGA.AA.A00J.01A	6	292464	170892551	7522	-0.0817	NEUTRAL	NA	1010	Too-Many
TCGA.AA.A00K.01A	6	292464	170892551	7548	-0.1335	NEUTRAL	NA	1010	Too-Many
TCGA.DM.A282.01A	6	292464	170892551	9152	-0.0073	NEUTRAL	NA	1010	Too-Many
TCGA.AY.A54L.01A	6	292464	170893340	9162	0.1378	NEUTRAL	NA	1010	Too-Many
TCGA.CM.4744.01A	6	292464	170893340	9170	-0.0419	NEUTRAL	NA	1010	Too-Many
TCGA.CM.4750.01A	6	292464	170893340	9173	0.1535	NEUTRAL	NA	1010	Too-Many
TCGA.AA.A02K.01A	6	292465	26094338	1010	0.0717	NEUTRAL	NA	127	Too-Many
TCGA.DM.A28K	6	303016	366332	15	0.2822	NEUTRAL	NA	1	DUSP22
TCGA.AG.3591	6	303016	411553	32	-0.2058	NEUTRAL	NA	2	"DUSP22,IRF4"
TCGA.AA.3866	6	303016	78962625	25763	-0.0054	NEUTRAL	NA	629	Too-Many
TCGA.AG.4009.01A	6	304543	350759	7	-0.0507	NEUTRAL	NA	1	DUSP22
TCGA.AG.3909.01A	6	304543	394784	9	-0.1931	NEUTRAL	NA	2	"DUSP22,IRF4"
TCGA.AG.A014.01A	6	304543	407404	14	0.122	NEUTRAL	NA	2	"DUSP22,IRF4"
TCGA.AG.A00C.01A	6	304543	2785262	71	-0.0758	NEUTRAL	NA	10	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,WRNIP1"
TCGA.AG.A015.01A	6	304543	3140572	111	0.3085	NEUTRAL	NA	16	"BPHL,DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,WRNIP1"
TCGA.AG.A01L.01A	6	304543	3140572	109	0.1581	NEUTRAL	NA	16	"BPHL,DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,WRNIP1"
TCGA.AF.3914.01A	6	304543	3226365	121	-0.0485	NEUTRAL	NA	18	"BPHL,DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,TUBB2A,TUBB2B,WRNIP1"
TCGA.AG.3906.01A	6	304543	4057220	146	-0.0721	NEUTRAL	NA	23	"BPHL,DUSP22,EXOC2,FAM50B,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.A02H.01A	6	304543	9897070	313	0.2039	NEUTRAL	NA	45	"BLOC1S5,BMP6,BPHL,C6orf201,CAGE1,CDYL,DSP,DUSP22,ECI2,EEF1E1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SLC35B3,SNRNP48,SSR1,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AG.A016.01A	6	304543	25983410	910	0.2974	NEUTRAL	NA	117	Too-Many
TCGA.AA.A029.01A	6	304543	26468410	977	-0.2997	NEUTRAL	NA	155	Too-Many
TCGA.AA.A01C.01A	6	304543	27798962	1032	-0.0778	NEUTRAL	NA	175	Too-Many
TCGA.AG.A025.01A	6	304543	30514861	1261	-0.2006	NEUTRAL	NA	237	Too-Many
TCGA.AG.A02X.01A	6	304543	31107408	1422	0.0888	NEUTRAL	NA	261	Too-Many
TCGA.AA.A02E.01A	6	304543	31590528	1483	0.1607	NEUTRAL	NA	279	Too-Many
TCGA.AA.A01D.01A	6	304543	31614134	1487	-0.1759	NEUTRAL	NA	280	Too-Many
TCGA.AG.A023.01A	6	304543	31828184	1629	-0.1816	NEUTRAL	NA	303	Too-Many
TCGA.AG.A008.01A	6	304543	32497854	1885	-0.1883	NEUTRAL	NA	332	Too-Many
TCGA.AG.A00H.01A	6	304543	33254821	2044	-0.1555	NEUTRAL	NA	357	Too-Many
TCGA.AG.A011.01A	6	304543	33748805	2161	-0.3129	NEUTRAL	NA	372	Too-Many
TCGA.AA.A02J.01A	6	304543	37611547	2497	-0.1425	NEUTRAL	NA	428	Too-Many
TCGA.AA.A017.01A	6	304543	44118233	3247	-0.1811	NEUTRAL	NA	510	Too-Many
TCGA.AG.A00Y.01A	6	304543	44344689	3423	0.3129	NEUTRAL	NA	519	Too-Many
TCGA.AG.A01J.01A	6	304543	44361133	3352	-0.2167	NEUTRAL	NA	520	Too-Many
TCGA.AA.A01I.01A	6	304543	100054861	5316	0.1146	NEUTRAL	NA	702	Too-Many
TCGA.AA.A02W.01A	6	304543	109764428	5597	0.0793	NEUTRAL	NA	734	Too-Many
TCGA.AA.A02F.01A	6	304543	165715028	7874	0.0827	NEUTRAL	NA	979	Too-Many
TCGA.AG.A02G.01A	6	304543	168467373	8307	-0.0058	NEUTRAL	NA	997	Too-Many
TCGA.AA.A02R.01A	6	304543	170892551	8290	-0.1003	NEUTRAL	NA	1010	Too-Many
TCGA.AG.A032.01A	6	304543	170892551	8359	-0.0896	NEUTRAL	NA	1010	Too-Many
TCGA.AY.5543	6	315196	4881614	2144	-0.0065	NEUTRAL	NA	27	"BPHL,C6orf201,CDYL,DUSP22,ECI2,EXOC2,FAM217A,FAM50B,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.A6.6652	6	323325	162809008	51661	-0.002	NEUTRAL	NA	976	Too-Many
TCGA.AD.6965	6	347165	22902739	9676	0.0448	NEUTRAL	NA	95	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,DUSP22,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HDGFL1,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.F4.6569	6	350370	33787505	13529	0.2287	NEUTRAL	NA	373	Too-Many
TCGA.CM.5341	6	355197	14933524	6651	-0.2401	NEUTRAL	NA	71	"ADTRP,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CD83,CDYL,DSP,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,HIVEP1,HUS1B,IRF4,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLK4,NEDD9,NOL7,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RIOK1,RIPK1,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.DM.A1D9	6	366332	2114110	870	-0.0073	NEUTRAL	NA	7	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.DY.A1DF	6	366332	42366437	16412	-0.4763	NEUTRAL	NA	468	Too-Many
TCGA.A6.6142	6	366332	156492673	49324	0.1973	NEUTRAL	NA	943	Too-Many
TCGA.DM.A1D0	6	366332	162324656	51188	0.0093	NEUTRAL	NA	975	Too-Many
TCGA.DM.A1DB	6	366332	162324656	51448	0.0102	NEUTRAL	NA	975	Too-Many
TCGA.NH.A6GB	6	366332	162468123	51486	0.0148	NEUTRAL	NA	975	Too-Many
TCGA.A6.5666	6	366332	170918030	54919	-0.0091	NEUTRAL	NA	1009	Too-Many
TCGA.DC.5337	6	366332	170918030	54759	-0.0002	NEUTRAL	NA	1009	Too-Many
TCGA.A6.4107	6	375758	58774715	21018	0.1688	NEUTRAL	NA	590	Too-Many
TCGA.DM.A285	6	375758	170918030	54824	0.0842	NEUTRAL	NA	1009	Too-Many
TCGA.D5.6530	6	382558	2033839	845	-0.0196	NEUTRAL	NA	7	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AA.3979	6	382558	6937258	3291	-0.0088	NEUTRAL	NA	33	"BPHL,C6orf201,CDYL,ECI2,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.CI.6620	6	382558	31277685	12542	0.0219	NEUTRAL	NA	264	Too-Many
TCGA.G4.6314	6	382558	56290814	20690	0.0045	NEUTRAL	NA	583	Too-Many
TCGA.AZ.5403	6	382558	67008285	22142	0.0086	NEUTRAL	NA	597	Too-Many
TCGA.NH.A50T	6	382558	162209897	51072	0.0309	NEUTRAL	NA	975	Too-Many
TCGA.A6.6781	6	382558	170918030	50159	0.0083	NEUTRAL	NA	1009	Too-Many
TCGA.A6.A565	6	382558	170918030	54617	0.0065	NEUTRAL	NA	1009	Too-Many
TCGA.AA.3522	6	382558	170918030	54942	0.0772	NEUTRAL	NA	1009	Too-Many
TCGA.CM.6679	6	382558	170918030	54755	-0.00465	NEUTRAL	NA	1009	Too-Many
TCGA.AG.3612	6	384520	7222812	3399	0.25	NEUTRAL	NA	34	"BPHL,C6orf201,CDYL,ECI2,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.DM.A28C	6	384520	170918030	54874	0.0061	NEUTRAL	NA	1009	Too-Many
TCGA.D5.6535	6	384545	28364792	11430	0.0252	NEUTRAL	NA	196	Too-Many
TCGA.AD.6901	6	384545	170918030	54798	0.034	NEUTRAL	NA	1009	Too-Many
TCGA.AG.3882	6	384545	170918030	54992	0.0127	NEUTRAL	NA	1009	Too-Many
TCGA.CM.6172	6	385055	170918030	54982	-0.1495	NEUTRAL	NA	1009	Too-Many
TCGA.EI.6506	6	385055	170918030	54868	0.0958	NEUTRAL	NA	1009	Too-Many
TCGA.DC.4745	6	385686	40225963	15557	-0.1166	NEUTRAL	NA	439	Too-Many
TCGA.AA.3812	6	385686	148003404	46107	0.2684	NEUTRAL	NA	901	Too-Many
TCGA.AA.3685	6	387658	2687113	1115	-0.4339	NEUTRAL	NA	8	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4"
TCGA.A6.6651	6	389629	170918030	54714	0.1106	NEUTRAL	NA	1009	Too-Many
TCGA.AG.3611.01A	6	393116	3140572	108	-0.3219	NEUTRAL	NA	15	"BPHL,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,WRNIP1"
TCGA.AA.3556	6	395633	2188595	874	-0.0651	NEUTRAL	NA	7	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.AG.3591	6	411953	717874	138	0.1695	NEUTRAL	NA	2	"EXOC2,HUS1B"
TCGA.AG.4009.01A	6	486616	1390663	28	-0.0805	NEUTRAL	NA	4	"EXOC2,FOXF2,FOXQ1,HUS1B"
TCGA.AG.A014.01A	6	486616	2685483	49	-0.3989	NEUTRAL	NA	7	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,MYLK4"
TCGA.AG.3909.01A	6	617674	2833870	39	-0.0879	NEUTRAL	NA	9	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,MYLK4,SERPINB1,WRNIP1"
TCGA.AA.A01Q.01A	6	617674	2892035	48	0.0072	NEUTRAL	NA	10	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,MYLK4,SERPINB1,SERPINB9,WRNIP1"
TCGA.F4.6854	6	644990	1134302	257	-0.0129	NEUTRAL	NA	2	"EXOC2,HUS1B"
TCGA.AA.3980.01A	6	656141	1624651	10	-0.4316	NEUTRAL	NA	6	"EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B"
TCGA.AA.A01T	6	669505	96071087	30689	0.0434	NEUTRAL	NA	683	Too-Many
TCGA.AG.3591	6	720464	13261629	5779	-0.2218	NEUTRAL	NA	59	"ADTRP,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CDYL,DSP,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GMDS,HIVEP1,LY86,LYRM4,MAK,MYLK4,NEDD9,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AD.A5EJ	6	787586	1918571	611	-0.0192	NEUTRAL	NA	4	"FOXC1,FOXF2,FOXQ1,GMDS"
TCGA.A6.6653	6	877137	2188595	647	-0.0297	NEUTRAL	NA	4	"FOXC1,FOXF2,FOXQ1,GMDS"
TCGA.F4.6854	6	1136473	1337980	135	0.3473	NEUTRAL	NA	1	FOXQ1
TCGA.AA.A00Z.01A	6	1312939	167709480	206	-0.2493	NEUTRAL	NA	987	Too-Many
TCGA.AG.3605.01A	6	1312939	168188168	196	-0.1311	NEUTRAL	NA	989	Too-Many
TCGA.F4.6854	6	1338169	2097685	340	0.0143	NEUTRAL	NA	3	"FOXC1,FOXF2,GMDS"
TCGA.CM.6165.01A	6	1394914	1624651	7	-0.5102	NEUTRAL	NA	3	"FOXC1,FOXF2,GMDS"
TCGA.AA.3858	6	1402306	162201369	50863	-0.0876	NEUTRAL	NA	970	Too-Many
TCGA.DM.A28A	6	1510230	1747756	133	0.0474	NEUTRAL	NA	2	"FOXC1,GMDS"
TCGA.A6.3810.01A	6	1612029	1613243	3	-0.4343	NEUTRAL	NA	1	FOXC1
TCGA.AG.3891.01A	6	1624336	4056537	103	-0.0729	NEUTRAL	NA	16	"BPHL,FAM50B,GMDS,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.A6.3810.01A	6	1624336	32411481	1977	0.3681	NEUTRAL	NA	324	Too-Many
TCGA.AG.4009.01A	6	1624651	2692989	19	-0.0797	NEUTRAL	NA	2	"GMDS,MYLK4"
TCGA.AG.4015	6	1683846	2225679	201	-0.4284	NEUTRAL	NA	1	GMDS
TCGA.CM.6165.01A	6	1726631	44200031	3594	-0.0366	NEUTRAL	NA	505	Too-Many
TCGA.AA.3980.01A	6	1726631	169632709	8981	0.1109	NEUTRAL	NA	993	Too-Many
TCGA.AA.3864	6	1836044	2115991	92	-0.3449	NEUTRAL	NA	1	GMDS
TCGA.AZ.4614	6	1917085	41725273	15248	-0.1045	NEUTRAL	NA	449	Too-Many
TCGA.AY.6196	6	1960334	2009648	19	0.2444	NEUTRAL	NA	1	GMDS
TCGA.AY.6196	6	2016678	2205805	45	-0.3117	NEUTRAL	NA	1	GMDS
TCGA.AA.3663	6	2021707	170918030	54013	0.0071	NEUTRAL	NA	1003	Too-Many
TCGA.DM.A28A	6	2086678	24376578	9395	0.0527	NEUTRAL	NA	91	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DCDC2,DEK,DSP,DTNBP1,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,GCM2,GCNT2,GFOD1,GMDS,GMPR,HDGFL1,HIVEP1,ID4,JARID2,KAAG1,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NRSN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.F4.6854	6	2106308	6918125	2415	0.356	NEUTRAL	NA	27	"BPHL,C6orf201,CDYL,ECI2,F13A1,FAM217A,FAM50B,FARS2,GMDS,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AM.5821	6	2106308	170918030	53928	-0.0107	NEUTRAL	NA	1003	Too-Many
TCGA.AA.3864	6	2121846	22741873	8740	0.075	NEUTRAL	NA	88	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,GCM2,GCNT2,GFOD1,GMDS,GMPR,HDGFL1,HIVEP1,ID4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.D5.6530	6	2123743	170918030	54104	0.0183	NEUTRAL	NA	1003	Too-Many
TCGA.AD.6895	6	2124998	170918030	54034	0.0106	NEUTRAL	NA	1003	Too-Many
TCGA.AD.A5EJ	6	2124998	170918030	53781	0.0074	NEUTRAL	NA	1003	Too-Many
TCGA.AA.3966	6	2130773	32243154	11987	-0.1929	NEUTRAL	NA	321	Too-Many
TCGA.DM.A1D9	6	2164454	44900252	16187	0.0017	NEUTRAL	NA	514	Too-Many
TCGA.AA.3518	6	2164454	55341606	19454	0.018	NEUTRAL	NA	575	Too-Many
TCGA.AA.3492	6	2188595	170918030	54074	-0.009	NEUTRAL	NA	1003	Too-Many
TCGA.AA.3556	6	2208359	26818967	10221	-0.0305	NEUTRAL	NA	152	Too-Many
TCGA.AY.6196	6	2208359	67008285	21038	0.2745	NEUTRAL	NA	591	Too-Many
TCGA.AG.4015	6	2230063	6423813	2095	0.0652	NEUTRAL	NA	26	"BPHL,C6orf201,CDYL,ECI2,F13A1,FAM217A,FAM50B,FARS2,GMDS,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.T9.A92H	6	2232807	29850273	11026	0.0381	NEUTRAL	NA	216	Too-Many
TCGA.BM.6198	6	2259327	77422496	24398	0.06495	NEUTRAL	NA	619	Too-Many
TCGA.A6.6653	6	2344621	15049403	5758	-0.011	NEUTRAL	NA	64	"ADTRP,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CD83,CDYL,DSP,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM217A,FAM50B,FARS2,GCM2,GCNT2,GFOD1,HIVEP1,LOC100130357,LY86,LYRM4,MAK,MCUR1,MYLK4,NEDD9,NOL7,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RIOK1,RIPK1,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.3685	6	2687728	2864294	93	0.1707	NEUTRAL	NA	3	"MYLK4,SERPINB1,WRNIP1"
TCGA.AG.A014.01A	6	2689033	4734939	105	0.3386	NEUTRAL	NA	18	"BPHL,C6orf201,ECI2,FAM217A,FAM50B,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.CK.5914.01A	6	2689033	5002303	134	-0.38	NEUTRAL	NA	20	"BPHL,C6orf201,CDYL,ECI2,FAM217A,FAM50B,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AG.4009.01A	6	2784501	2892035	9	-0.1631	NEUTRAL	NA	3	"SERPINB1,SERPINB9,WRNIP1"
TCGA.AA.3685	6	2869287	3281413	139	-0.439	NEUTRAL	NA	9	"BPHL,NQO2,PSMG4,RIPK1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B"
TCGA.AG.4009.01A	6	2893597	2900628	4	-0.4675	NEUTRAL	NA	1	SERPINB9
TCGA.AA.A01Q.01A	6	2893597	3738240	54	-0.3786	NEUTRAL	NA	10	"BPHL,NQO2,PSMG4,PXDC1,RIPK1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B"
TCGA.AA.A024.01A	6	2955711	13597140	397	-0.0081	NEUTRAL	NA	55	"ADTRP,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CDYL,DSP,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM217A,FAM50B,FARS2,GCM2,GCNT2,GFOD1,HIVEP1,LOC100130357,LY86,LYRM4,MAK,NEDD9,NQO2,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB6,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5"
TCGA.AA.A00D.01A	6	3105675	5002303	74	0.0437	NEUTRAL	NA	14	"BPHL,C6orf201,CDYL,ECI2,FAM217A,FAM50B,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SLC22A23,TUBB2A,TUBB2B"
TCGA.AG.3611.01A	6	3152668	3155818	4	0.2463	NEUTRAL	NA	2	"BPHL,TUBB2A"
TCGA.AG.A015.01A	6	3156238	30878395	1254	0.1829	NEUTRAL	NA	236	Too-Many
TCGA.AG.3909.01A	6	3157580	3410375	15	-0.0644	NEUTRAL	NA	4	"PSMG4,SLC22A23,TUBB2A,TUBB2B"
TCGA.AA.A010.01A	6	3157580	4052932	42	-0.0682	NEUTRAL	NA	7	"FAM50B,PRPF4B,PSMG4,PXDC1,SLC22A23,TUBB2A,TUBB2B"
TCGA.AG.3611.01A	6	3157580	7542120	130	-0.242	NEUTRAL	NA	23	"C6orf201,CAGE1,CDYL,DSP,ECI2,F13A1,FAM217A,FAM50B,FARS2,LY86,LYRM4,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RPP40,RREB1,SLC22A23,SSR1,TUBB2A,TUBB2B"
TCGA.AA.A00F.01A	6	3224938	4058949	32	0.2756	NEUTRAL	NA	6	"FAM50B,PRPF4B,PSMG4,PXDC1,SLC22A23,TUBB2B"
TCGA.AG.4009.01A	6	3224938	4060640	33	-0.1959	NEUTRAL	NA	6	"FAM50B,PRPF4B,PSMG4,PXDC1,SLC22A23,TUBB2B"
TCGA.AG.A01L.01A	6	3224938	30697799	1232	0.0649	NEUTRAL	NA	232	Too-Many
TCGA.AF.3914.01A	6	3226748	4060640	29	0.3714	NEUTRAL	NA	6	"FAM50B,PRPF4B,PSMG4,PXDC1,SLC22A23,TUBB2B"
TCGA.AG.A00C.01A	6	3273252	3410375	8	-0.4377	NEUTRAL	NA	1	SLC22A23
TCGA.AA.A00N.01A	6	3273252	4058949	33	-0.3273	NEUTRAL	NA	4	"FAM50B,PRPF4B,PXDC1,SLC22A23"
TCGA.AA.A01K.01A	6	3273252	44361133	3212	-0.1352	NEUTRAL	NA	501	Too-Many
TCGA.AA.3685	6	3281725	4213143	463	0.0866	NEUTRAL	NA	7	"C6orf201,ECI2,FAM217A,FAM50B,PRPF4B,PXDC1,SLC22A23"
TCGA.AA.3833	6	3281725	170918030	53647	0.0083	NEUTRAL	NA	991	Too-Many
TCGA.AG.A00C.01A	6	3723805	5004073	53	0.2817	NEUTRAL	NA	8	"C6orf201,CDYL,ECI2,FAM217A,FAM50B,PRPF4B,PXDC1,RPP40"
TCGA.AA.A01Q.01A	6	3751493	15501111	334	0.0414	NEUTRAL	NA	53	"ADTRP,BLOC1S5,BMP6,C6orf201,C6orf52,CAGE1,CD83,CDYL,DSP,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM217A,FAM50B,FARS2,GCM2,GCNT2,GFOD1,HIVEP1,JARID2,LOC100130357,LY86,LYRM4,MAK,MCUR1,NEDD9,NOL7,NRN1,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PXDC1,RANBP9,RIOK1,RNF182,RPP40,RREB1,SIRT5,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TXNDC5"
TCGA.AA.A00Q.01A	6	4031755	4068933	15	0.3547	NEUTRAL	NA	2	"FAM217A,PRPF4B"
TCGA.AG.3909.01A	6	4031755	5002303	47	-0.3195	NEUTRAL	NA	6	"C6orf201,CDYL,ECI2,FAM217A,PRPF4B,RPP40"
TCGA.CA.5254	6	4061770	4155326	57	0.2926	NEUTRAL	NA	4	"C6orf201,ECI2,FAM217A,PRPF4B"
TCGA.AA.A00Q.01A	6	4073445	31324518	1151	-0.1192	NEUTRAL	NA	243	Too-Many
TCGA.AF.3914.01A	6	4099183	4135702	13	-0.2732	NEUTRAL	NA	2	"C6orf201,ECI2"
TCGA.AG.3906.01A	6	4099183	25983410	756	0.0263	NEUTRAL	NA	93	"ACOT13,ADTRP,ALDH5A1,ATXN1,BLOC1S5,BMP6,C6orf201,C6orf229,C6orf52,C6orf62,CAGE1,CAP2,CD83,CDKAL1,CDYL,DCDC2,DEK,DSP,DTNBP1,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM65B,FAM8A1,FARS2,GCM2,GCNT2,GFOD1,GMNN,GMPR,GPLD1,HDGFL1,HIST1H2AA,HIST1H2BA,HIVEP1,ID4,JARID2,KAAG1,KDM1B,KIAA0319,KIF13A,LOC100130357,LRRC16A,LY86,LYRM4,MAK,MBOAT1,MCUR1,MRS2,MYLIP,NEDD9,NHLRC1,NOL7,NRN1,NRSN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,RANBP9,RBM24,RIOK1,RNF144B,RNF182,RPP40,RREB1,SCGN,SIRT5,SLC17A1,SLC17A2,SLC17A3,SLC17A4,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TDP2,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TRIM38,TXNDC5"
TCGA.AA.A010.01A	6	4117495	4133746	10	-0.4151	NEUTRAL	NA	2	"C6orf201,ECI2"
TCGA.AG.3891.01A	6	4125432	7888911	142	-0.015	NEUTRAL	NA	18	"BMP6,C6orf201,CAGE1,CDYL,DSP,ECI2,F13A1,FARS2,LY86,LYRM4,NRN1,PPP1R3G,RIOK1,RPP40,RREB1,SNRNP48,SSR1,TXNDC5"
TCGA.AG.4009.01A	6	4135702	4734939	3	-0.3451	NEUTRAL	NA	1	ECI2
TCGA.CA.5254	6	4155791	56727433	18906	-0.4765	NEUTRAL	NA	559	Too-Many
TCGA.AA.3685	6	4215220	4901836	343	-0.4536	NEUTRAL	NA	1	CDYL
TCGA.AG.3598	6	4499771	170918030	52889	0.0146	NEUTRAL	NA	984	Too-Many
TCGA.AA.A022	6	4706191	170918030	52811	0.0676	NEUTRAL	NA	984	Too-Many
TCGA.AF.3914.01A	6	4715961	7211768	54	0.2413	NEUTRAL	NA	9	"CDYL,F13A1,FARS2,LY86,LYRM4,NRN1,PPP1R3G,RPP40,RREB1"
TCGA.AA.A00F.01A	6	4715961	24301902	475	0.2704	NEUTRAL	NA	71	"ADTRP,ATXN1,BLOC1S5,BMP6,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DCDC2,DEK,DSP,DTNBP1,E2F3,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM8A1,FARS2,GCM2,GCNT2,GFOD1,GMPR,HDGFL1,HIVEP1,ID4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,NEDD9,NHLRC1,NOL7,NRN1,NRSN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,RANBP9,RBM24,RIOK1,RNF144B,RNF182,RPP40,RREB1,SIRT5,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TXNDC5"
TCGA.AG.4009.01A	6	4891960	5771475	23	0.0252	NEUTRAL	NA	5	"CDYL,FARS2,LYRM4,PPP1R3G,RPP40"
TCGA.AG.A014.01A	6	4891960	27798962	864	-0.0997	NEUTRAL	NA	149	Too-Many
TCGA.AY.5543	6	4893026	38128242	12464	-0.0003	NEUTRAL	NA	403	Too-Many
TCGA.AA.3685	6	4902240	9521760	2175	0.0985	NEUTRAL	NA	19	"BLOC1S5,BMP6,CAGE1,CDYL,DSP,EEF1E1,F13A1,FARS2,LY86,LYRM4,NRN1,PPP1R3G,RIOK1,RPP40,RREB1,SLC35B3,SNRNP48,SSR1,TXNDC5"
TCGA.AA.3862.01A	6	5002303	25849551	781	-0.1923	NEUTRAL	NA	88	"ACOT13,ADTRP,ALDH5A1,ATXN1,BLOC1S5,BMP6,C6orf229,C6orf52,C6orf62,CAGE1,CAP2,CD83,CDKAL1,DCDC2,DEK,DSP,DTNBP1,E2F3,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM65B,FAM8A1,FARS2,GCM2,GCNT2,GFOD1,GMNN,GMPR,GPLD1,HDGFL1,HIST1H2AA,HIST1H2BA,HIVEP1,ID4,JARID2,KAAG1,KDM1B,KIAA0319,KIF13A,LOC100130357,LRRC16A,LY86,LYRM4,MAK,MBOAT1,MCUR1,MRS2,MYLIP,NEDD9,NHLRC1,NOL7,NRN1,NRSN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,RANBP9,RBM24,RIOK1,RNF144B,RNF182,RPP40,RREB1,SCGN,SIRT5,SLC17A1,SLC17A3,SLC17A4,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TDP2,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TXNDC5"
TCGA.AA.A00D.01A	6	5004073	7189355	35	-0.4462	NEUTRAL	NA	8	"F13A1,FARS2,LY86,LYRM4,NRN1,PPP1R3G,RPP40,RREB1"
TCGA.AG.A00C.01A	6	5109590	6318731	27	-0.2268	NEUTRAL	NA	4	"F13A1,FARS2,LYRM4,NRN1"
TCGA.AA.3850	6	5289446	6552911	711	0.03175	NEUTRAL	NA	3	"F13A1,FARS2,NRN1"
TCGA.AA.3982	6	5312079	8237238	1497	0.1243	NEUTRAL	NA	14	"BLOC1S5,BMP6,CAGE1,DSP,EEF1E1,F13A1,FARS2,LY86,NRN1,RIOK1,RREB1,SNRNP48,SSR1,TXNDC5"
TCGA.DY.A1DG	6	5726230	25568941	8182	-0.0002	NEUTRAL	NA	79	"ACOT13,ADTRP,ALDH5A1,ATXN1,BLOC1S5,BMP6,C6orf229,C6orf52,C6orf62,CAGE1,CAP2,CD83,CDKAL1,DCDC2,DEK,DSP,DTNBP1,E2F3,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM65B,FAM8A1,FARS2,GCM2,GCNT2,GFOD1,GMNN,GMPR,GPLD1,HDGFL1,HIVEP1,ID4,JARID2,KAAG1,KDM1B,KIAA0319,KIF13A,LOC100130357,LRRC16A,LY86,MAK,MBOAT1,MCUR1,MRS2,MYLIP,NEDD9,NHLRC1,NOL7,NRN1,NRSN1,NUP153,PAK1IP1,PHACTR1,PRL,RANBP9,RBM24,RIOK1,RNF144B,RNF182,RREB1,SIRT5,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TDP2,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TXNDC5"
TCGA.AA.A010.01A	6	5829195	7189355	30	0.1403	NEUTRAL	NA	4	"F13A1,LY86,NRN1,RREB1"
TCGA.AG.4009.01A	6	6145802	7189355	23	-0.0589	NEUTRAL	NA	3	"F13A1,LY86,RREB1"
TCGA.F5.6465	6	6266330	7361436	581	-0.0293	NEUTRAL	NA	5	"CAGE1,F13A1,LY86,RREB1,SSR1"
TCGA.AG.4015	6	6433650	36288744	11063	0.0717	NEUTRAL	NA	375	Too-Many
TCGA.AA.3850	6	6552993	8342075	838	0.35425	NEUTRAL	NA	11	"BLOC1S5,BMP6,CAGE1,DSP,EEF1E1,LY86,RIOK1,RREB1,SNRNP48,SSR1,TXNDC5"
TCGA.AG.A00C.01A	6	6588931	13305289	251	0.0706	NEUTRAL	NA	32	"ADTRP,BLOC1S5,BMP6,C6orf52,CAGE1,DSP,EDN1,EEF1E1,ELOVL2,ERVFRD-1,GCM2,GCNT2,HIVEP1,LOC100130357,LY86,MAK,NEDD9,PAK1IP1,PHACTR1,RIOK1,RREB1,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TXNDC5"
TCGA.F4.6854	6	6922015	14710283	3264	-0.0085	NEUTRAL	NA	38	"ADTRP,BLOC1S5,BMP6,C6orf52,CAGE1,CD83,DSP,EDN1,EEF1E1,ELOVL2,ERVFRD-1,GCM2,GCNT2,GFOD1,HIVEP1,LOC100130357,MAK,MCUR1,NEDD9,NOL7,PAK1IP1,PHACTR1,RANBP9,RIOK1,RNF182,RREB1,SIRT5,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TXNDC5"
TCGA.AA.3979	6	6965767	45961769	14024	0.0164	NEUTRAL	NA	489	Too-Many
TCGA.AG.4009.01A	6	7211014	7570630	52	-0.3702	NEUTRAL	NA	5	"CAGE1,DSP,RIOK1,RREB1,SSR1"
TCGA.CK.5914.01A	6	7211014	10756624	160	-0.0827	NEUTRAL	NA	17	"BLOC1S5,BMP6,C6orf52,CAGE1,DSP,EEF1E1,GCNT2,PAK1IP1,RIOK1,RREB1,SLC35B3,SNRNP48,SSR1,TFAP2A,TMEM14B,TMEM14C,TXNDC5"
TCGA.AA.A00D.01A	6	7211014	13307780	198	-0.0513	NEUTRAL	NA	31	"ADTRP,BLOC1S5,BMP6,C6orf52,CAGE1,DSP,EDN1,EEF1E1,ELOVL2,ERVFRD-1,GCM2,GCNT2,HIVEP1,LOC100130357,MAK,NEDD9,PAK1IP1,PHACTR1,RIOK1,RREB1,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TXNDC5"
TCGA.A6.3808.01A	6	7211014	31680269	1448	0.092	NEUTRAL	NA	254	Too-Many
TCGA.AF.3914.01A	6	7240658	10398633	108	0.2165	NEUTRAL	NA	12	"BLOC1S5,BMP6,CAGE1,DSP,EEF1E1,RIOK1,RREB1,SLC35B3,SNRNP48,SSR1,TFAP2A,TXNDC5"
TCGA.AG.3612	6	7247247	170918030	51277	0.3492	NEUTRAL	NA	976	Too-Many
TCGA.AG.3909.01A	6	7330004	9939426	94	-0.2063	NEUTRAL	NA	9	"BLOC1S5,BMP6,CAGE1,DSP,EEF1E1,RIOK1,SLC35B3,SNRNP48,TXNDC5"
TCGA.AZ.4684.01A	6	7355213	8415078	87	0.0786	NEUTRAL	NA	9	"BLOC1S5,BMP6,CAGE1,DSP,EEF1E1,RIOK1,SLC35B3,SNRNP48,TXNDC5"
TCGA.AA.A00N.01A	6	7365654	9908698	97	-0.3315	NEUTRAL	NA	9	"BLOC1S5,BMP6,CAGE1,DSP,EEF1E1,RIOK1,SLC35B3,SNRNP48,TXNDC5"
TCGA.AA.A010.01A	6	7368884	7401146	12	0.324	NEUTRAL	NA	2	"CAGE1,RIOK1"
TCGA.F5.6465	6	7370057	15950026	3549	0.33	NEUTRAL	NA	38	"ADTRP,BLOC1S5,BMP6,C6orf52,CAGE1,CD83,DSP,DTNBP1,EDN1,EEF1E1,ELOVL2,ERVFRD-1,GCM2,GCNT2,GFOD1,HIVEP1,JARID2,LOC100130357,MAK,MCUR1,NEDD9,NOL7,PAK1IP1,PHACTR1,RANBP9,RIOK1,RNF182,SIRT5,SLC35B3,SMIM13,SNRNP48,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TXNDC5"
TCGA.AA.3509.01A	6	7370100	8415078	82	-0.0321	NEUTRAL	NA	9	"BLOC1S5,BMP6,CAGE1,DSP,EEF1E1,RIOK1,SLC35B3,SNRNP48,TXNDC5"
TCGA.AA.A00A.01A	6	7555912	32260751	1394	-0.145	NEUTRAL	NA	291	Too-Many
TCGA.AG.4009.01A	6	7571565	7889673	29	0.0272	NEUTRAL	NA	4	"BMP6,DSP,SNRNP48,TXNDC5"
TCGA.AA.A010.01A	6	7572115	7880185	25	0.1699	NEUTRAL	NA	3	"BMP6,DSP,SNRNP48"
TCGA.AG.3611.01A	6	7579526	10398633	54	-0.1904	NEUTRAL	NA	8	"BLOC1S5,BMP6,DSP,EEF1E1,SLC35B3,SNRNP48,TFAP2A,TXNDC5"
TCGA.AG.3891.01A	6	7899782	28493737	801	-0.0395	NEUTRAL	NA	158	Too-Many
TCGA.AG.4009.01A	6	8015845	9939426	26	-0.0147	NEUTRAL	NA	3	"BLOC1S5,EEF1E1,SLC35B3"
TCGA.AA.3982	6	8240326	8548767	125	-0.1526	NEUTRAL	NA	1	SLC35B3
TCGA.G4.6299	6	8295301	17131242	3649	-0.5043	NEUTRAL	NA	34	"ADTRP,ATXN1,C6orf52,CD83,DTNBP1,EDN1,ELOVL2,ERVFRD-1,GCM2,GCNT2,GFOD1,GMPR,HIVEP1,JARID2,LOC100130357,MAK,MCUR1,MYLIP,NEDD9,NOL7,PAK1IP1,PHACTR1,RANBP9,RNF182,SIRT5,SLC35B3,SMIM13,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B"
TCGA.AA.3850	6	8343670	10277157	759	-0.28995	NEUTRAL	NA	1	SLC35B3
TCGA.AA.3844	6	8374792	10192440	692	-0.3238	NEUTRAL	NA	1	SLC35B3
TCGA.AA.A010.01A	6	8413735	10775520	59	-0.0396	NEUTRAL	NA	8	"C6orf52,GCNT2,MAK,PAK1IP1,SLC35B3,TFAP2A,TMEM14B,TMEM14C"
TCGA.AA.3509.01A	6	8420917	24873843	552	-0.1781	NEUTRAL	NA	64	"ACOT13,ADTRP,ALDH5A1,ATXN1,C6orf229,C6orf52,C6orf62,CAP2,CD83,CDKAL1,DCDC2,DEK,DTNBP1,E2F3,EDN1,ELOVL2,ERVFRD-1,FAM65B,FAM8A1,GCM2,GCNT2,GFOD1,GMNN,GMPR,GPLD1,HDGFL1,HIVEP1,ID4,JARID2,KAAG1,KDM1B,KIAA0319,KIF13A,LOC100130357,MAK,MBOAT1,MCUR1,MRS2,MYLIP,NEDD9,NHLRC1,NOL7,NRSN1,NUP153,PAK1IP1,PHACTR1,PRL,RANBP9,RBM24,RNF144B,RNF182,SIRT5,SLC35B3,SMIM13,SOX4,STMND1,SYCP2L,TBC1D7,TDP2,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT"
TCGA.AZ.4684.01A	6	8422696	24781668	526	-0.0246	NEUTRAL	NA	62	"ACOT13,ADTRP,ALDH5A1,ATXN1,C6orf52,C6orf62,CAP2,CD83,CDKAL1,DCDC2,DEK,DTNBP1,E2F3,EDN1,ELOVL2,ERVFRD-1,FAM8A1,GCM2,GCNT2,GFOD1,GMNN,GMPR,GPLD1,HDGFL1,HIVEP1,ID4,JARID2,KAAG1,KDM1B,KIAA0319,KIF13A,LOC100130357,MAK,MBOAT1,MCUR1,MRS2,MYLIP,NEDD9,NHLRC1,NOL7,NRSN1,NUP153,PAK1IP1,PHACTR1,PRL,RANBP9,RBM24,RNF144B,RNF182,SIRT5,SLC35B3,SMIM13,SOX4,STMND1,SYCP2L,TBC1D7,TDP2,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT"
TCGA.AA.3982	6	8561427	8739770	68	-0.182	NEUTRAL	NA	0	None
TCGA.AA.3982	6	8749359	10240373	561	-0.1767	NEUTRAL	NA	0	None
TCGA.EI.6883	6	9257156	9720868	151	0.0044	NEUTRAL	NA	0	None
TCGA.AA.3685	6	9524274	13135339	1529	-0.4007	NEUTRAL	NA	18	"ADTRP,C6orf52,EDN1,ELOVL2,ERVFRD-1,GCM2,GCNT2,HIVEP1,MAK,NEDD9,PAK1IP1,PHACTR1,SMIM13,SYCP2L,TFAP2A,TMEM14B,TMEM14C,TMEM170B"
TCGA.AA.A02H.01A	6	9900510	24489594	430	-0.1439	NEUTRAL	NA	55	"ADTRP,ATXN1,C6orf52,CAP2,CD83,CDKAL1,DCDC2,DEK,DTNBP1,E2F3,EDN1,ELOVL2,ERVFRD-1,FAM8A1,GCM2,GCNT2,GFOD1,GMPR,GPLD1,HDGFL1,HIVEP1,ID4,JARID2,KAAG1,KDM1B,KIF13A,LOC100130357,MAK,MBOAT1,MCUR1,MRS2,MYLIP,NEDD9,NHLRC1,NOL7,NRSN1,NUP153,PAK1IP1,PHACTR1,PRL,RANBP9,RBM24,RNF144B,RNF182,SIRT5,SMIM13,SOX4,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT"
TCGA.AH.6544	6	9997431	163059426	47170	-0.1673	NEUTRAL	NA	931	Too-Many
TCGA.EI.6883	6	10053681	10528433	232	-0.0085	NEUTRAL	NA	2	"GCNT2,TFAP2A"
TCGA.AA.3941	6	10069554	18618734	3486	-0.201	NEUTRAL	NA	43	"ADTRP,ATXN1,C6orf52,CAP2,CD83,DEK,DTNBP1,EDN1,ELOVL2,ERVFRD-1,FAM8A1,GCM2,GCNT2,GFOD1,GMPR,HIVEP1,JARID2,KDM1B,KIF13A,LOC100130357,MAK,MCUR1,MYLIP,NEDD9,NHLRC1,NOL7,NUP153,PAK1IP1,PHACTR1,RANBP9,RBM24,RNF144B,RNF182,SIRT5,SMIM13,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT"
TCGA.AA.3844	6	10195699	11943504	754	-0.0161	NEUTRAL	NA	15	"ADTRP,C6orf52,ELOVL2,ERVFRD-1,GCM2,GCNT2,MAK,NEDD9,PAK1IP1,SMIM13,SYCP2L,TFAP2A,TMEM14B,TMEM14C,TMEM170B"
TCGA.AA.3982	6	10241821	14597287	1830	0.2936	NEUTRAL	NA	27	"ADTRP,C6orf52,CD83,EDN1,ELOVL2,ERVFRD-1,GCM2,GCNT2,GFOD1,HIVEP1,LOC100130357,MAK,MCUR1,NEDD9,NOL7,PAK1IP1,PHACTR1,RANBP9,RNF182,SIRT5,SMIM13,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B"
TCGA.AA.3850	6	10283337	18618734	3363	0.15255	NEUTRAL	NA	43	"ADTRP,ATXN1,C6orf52,CAP2,CD83,DEK,DTNBP1,EDN1,ELOVL2,ERVFRD-1,FAM8A1,GCM2,GCNT2,GFOD1,GMPR,HIVEP1,JARID2,KDM1B,KIF13A,LOC100130357,MAK,MCUR1,MYLIP,NEDD9,NHLRC1,NOL7,NUP153,PAK1IP1,PHACTR1,RANBP9,RBM24,RNF144B,RNF182,SIRT5,SMIM13,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT"
TCGA.AG.4009.01A	6	10419571	22297098	382	-0.1083	NEUTRAL	NA	49	"ADTRP,ATXN1,C6orf52,CAP2,CD83,CDKAL1,DEK,DTNBP1,E2F3,EDN1,ELOVL2,ERVFRD-1,FAM8A1,GCM2,GCNT2,GFOD1,GMPR,HIVEP1,ID4,JARID2,KDM1B,KIF13A,LOC100130357,MAK,MBOAT1,MCUR1,MYLIP,NEDD9,NHLRC1,NOL7,NUP153,PAK1IP1,PHACTR1,PRL,RANBP9,RBM24,RNF144B,RNF182,SIRT5,SMIM13,SOX4,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT"
TCGA.AF.3914.01A	6	10419571	27439992	695	0.207	NEUTRAL	NA	123	Too-Many
TCGA.AA.A00N.01A	6	10509261	10702585	14	-0.3605	NEUTRAL	NA	3	"C6orf52,GCNT2,PAK1IP1"
TCGA.AG.3909.01A	6	10529105	10756624	24	-0.4028	NEUTRAL	NA	5	"C6orf52,GCNT2,PAK1IP1,TMEM14B,TMEM14C"
TCGA.AG.3611.01A	6	10529105	13206009	77	-0.0689	NEUTRAL	NA	17	"ADTRP,C6orf52,EDN1,ELOVL2,ERVFRD-1,GCM2,GCNT2,HIVEP1,MAK,NEDD9,PAK1IP1,PHACTR1,SMIM13,SYCP2L,TMEM14B,TMEM14C,TMEM170B"
TCGA.EI.6883	6	10556871	10829556	72	0.0413	NEUTRAL	NA	6	"C6orf52,GCNT2,MAK,PAK1IP1,TMEM14B,TMEM14C"
TCGA.AG.3909.01A	6	10764643	13307780	103	0.2282	NEUTRAL	NA	14	"ADTRP,EDN1,ELOVL2,ERVFRD-1,GCM2,HIVEP1,LOC100130357,MAK,NEDD9,PHACTR1,SMIM13,SYCP2L,TBC1D7,TMEM170B"
TCGA.CK.5914.01A	6	10764643	13316786	110	0.3575	NEUTRAL	NA	14	"ADTRP,EDN1,ELOVL2,ERVFRD-1,GCM2,HIVEP1,LOC100130357,MAK,NEDD9,PHACTR1,SMIM13,SYCP2L,TBC1D7,TMEM170B"
TCGA.AA.A010.01A	6	10891704	11044371	31	0.3016	NEUTRAL	NA	2	"ELOVL2,SYCP2L"
TCGA.AA.A010.01A	6	11185416	11778798	21	0.2082	NEUTRAL	NA	3	"ADTRP,NEDD9,TMEM170B"
TCGA.CL.5917	6	11878243	170918030	49520	0.0051	NEUTRAL	NA	950	Too-Many
TCGA.AA.3844	6	11951409	16850109	2067	0.0058	NEUTRAL	NA	17	"ATXN1,CD83,DTNBP1,EDN1,GFOD1,GMPR,HIVEP1,JARID2,LOC100130357,MCUR1,MYLIP,NOL7,PHACTR1,RANBP9,RNF182,SIRT5,TBC1D7"
TCGA.AA.A010.01A	6	12129950	13658952	62	0.2432	NEUTRAL	NA	9	"EDN1,GFOD1,HIVEP1,LOC100130357,NOL7,PHACTR1,RANBP9,SIRT5,TBC1D7"
TCGA.AA.A00N.01A	6	12130988	12749629	11	-0.0343	NEUTRAL	NA	3	"EDN1,HIVEP1,PHACTR1"
TCGA.AA.A01R	6	12770842	13262291	219	0.3302	NEUTRAL	NA	1	PHACTR1
TCGA.EI.6883	6	13085334	18267094	1995	0.016	NEUTRAL	NA	25	"ATXN1,CAP2,CD83,DEK,DTNBP1,FAM8A1,GFOD1,GMPR,JARID2,KDM1B,KIF13A,LOC100130357,MCUR1,MYLIP,NHLRC1,NOL7,NUP153,PHACTR1,RANBP9,RBM24,RNF182,SIRT5,STMND1,TBC1D7,TPMT"
TCGA.AA.3685	6	13137156	14009618	354	0.0961	NEUTRAL	NA	9	"GFOD1,LOC100130357,MCUR1,NOL7,PHACTR1,RANBP9,RNF182,SIRT5,TBC1D7"
TCGA.AG.3591	6	13261678	51825716	13208	0.163	NEUTRAL	NA	495	Too-Many
TCGA.AG.3611.01A	6	13272958	13364958	9	-0.4972	NEUTRAL	NA	4	"GFOD1,LOC100130357,PHACTR1,TBC1D7"
TCGA.AA.A00D.01A	6	13316786	13620931	22	0.2496	NEUTRAL	NA	4	"GFOD1,NOL7,SIRT5,TBC1D7"
TCGA.AG.3611.01A	6	13470070	15651473	69	-0.1905	NEUTRAL	NA	9	"CD83,DTNBP1,GFOD1,JARID2,MCUR1,NOL7,RANBP9,RNF182,SIRT5"
TCGA.AA.A024.01A	6	13604631	30520808	798	-0.0099	NEUTRAL	NA	171	Too-Many
TCGA.AA.A00D.01A	6	13622542	25762140	315	-0.0974	NEUTRAL	NA	45	"ACOT13,ALDH5A1,ATXN1,C6orf229,C6orf62,CAP2,CD83,CDKAL1,DCDC2,DEK,DTNBP1,E2F3,FAM65B,FAM8A1,GMNN,GMPR,GPLD1,HDGFL1,HIST1H2AA,HIST1H2BA,ID4,JARID2,KAAG1,KDM1B,KIAA0319,KIF13A,LRRC16A,MBOAT1,MCUR1,MRS2,MYLIP,NHLRC1,NRSN1,NUP153,PRL,RANBP9,RBM24,RNF144B,RNF182,SCGN,SLC17A4,SOX4,STMND1,TDP2,TPMT"
TCGA.AG.3909.01A	6	13625838	13634612	3	-0.3111	NEUTRAL	NA	1	RANBP9
TCGA.AA.A00N.01A	6	13632554	17284824	76	-0.4072	NEUTRAL	NA	11	"ATXN1,CD83,DTNBP1,GMPR,JARID2,MCUR1,MYLIP,RANBP9,RBM24,RNF182,STMND1"
TCGA.AG.A00C.01A	6	13632554	17556535	82	0.0706	NEUTRAL	NA	12	"ATXN1,CAP2,CD83,DTNBP1,GMPR,JARID2,MCUR1,MYLIP,RANBP9,RBM24,RNF182,STMND1"
TCGA.AG.3909.01A	6	13637989	13696970	9	0.1926	NEUTRAL	NA	1	RANBP9
TCGA.CK.5914.01A	6	13696970	17688578	102	0.0763	NEUTRAL	NA	14	"ATXN1,CAP2,CD83,DTNBP1,FAM8A1,GMPR,JARID2,MCUR1,MYLIP,NUP153,RANBP9,RBM24,RNF182,STMND1"
TCGA.AG.3909.01A	6	13790972	13794073	3	-0.2618	NEUTRAL	NA	1	MCUR1
TCGA.AG.3909.01A	6	13977369	15487499	12	0.0656	NEUTRAL	NA	3	"CD83,JARID2,RNF182"
TCGA.AA.3685	6	14010123	18347265	1656	-0.4138	NEUTRAL	NA	16	"ATXN1,CAP2,CD83,DEK,DTNBP1,FAM8A1,GMPR,JARID2,KDM1B,KIF13A,MYLIP,NHLRC1,NUP153,RBM24,STMND1,TPMT"
TCGA.DM.A1HB	6	14282178	43038062	9994	0.0106	NEUTRAL	NA	414	Too-Many
TCGA.AA.3982	6	14598307	14599245	6	-0.4786	NEUTRAL	NA	0	None
TCGA.CM.5341	6	14944856	15172267	71	0.2489	NEUTRAL	NA	0	None
TCGA.A6.6653	6	15049739	15251180	46	-0.456	NEUTRAL	NA	1	JARID2
TCGA.AA.A03J	6	15133864	170918030	47309	0.247	NEUTRAL	NA	938	Too-Many
TCGA.CM.5341	6	15177231	16421121	489	-0.2492	NEUTRAL	NA	5	"ATXN1,DTNBP1,GMPR,JARID2,MYLIP"
TCGA.A6.6653	6	15256570	15426641	50	-0.1046	NEUTRAL	NA	1	JARID2
TCGA.AA.A010.01A	6	15374311	16146841	33	0.2224	NEUTRAL	NA	3	"DTNBP1,JARID2,MYLIP"
TCGA.A6.6653	6	15429730	15518531	43	-0.458	NEUTRAL	NA	1	JARID2
TCGA.A6.6653	6	15523100	24177922	3408	-0.016	NEUTRAL	NA	24	"ATXN1,CAP2,CDKAL1,DCDC2,DEK,DTNBP1,E2F3,FAM8A1,GMPR,HDGFL1,ID4,KDM1B,KIF13A,MBOAT1,MYLIP,NHLRC1,NRSN1,NUP153,PRL,RBM24,RNF144B,SOX4,STMND1,TPMT"
TCGA.AA.A01Q.01A	6	15523175	24403237	170	0.1213	NEUTRAL	NA	26	"ATXN1,CAP2,CDKAL1,DCDC2,DEK,DTNBP1,E2F3,FAM8A1,GMPR,HDGFL1,ID4,KAAG1,KDM1B,KIF13A,MBOAT1,MRS2,MYLIP,NHLRC1,NRSN1,NUP153,PRL,RBM24,RNF144B,SOX4,STMND1,TPMT"
TCGA.AG.3909.01A	6	15533443	17284824	27	-0.2142	NEUTRAL	NA	6	"ATXN1,DTNBP1,GMPR,MYLIP,RBM24,STMND1"
TCGA.AA.3982	6	15764637	15773082	9	-0.3994	NEUTRAL	NA	0	None
TCGA.AA.3982	6	15775453	17063093	615	0.3353	NEUTRAL	NA	3	"ATXN1,GMPR,MYLIP"
TCGA.F5.6465	6	15954508	16459849	219	-0.0213	NEUTRAL	NA	3	"ATXN1,GMPR,MYLIP"
TCGA.AG.3611.01A	6	16274589	27368873	391	-0.133	NEUTRAL	NA	92	"ABT1,ACOT13,ALDH5A1,ATXN1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,C6orf229,C6orf62,CAP2,CDKAL1,DCDC2,DEK,E2F3,FAM65B,FAM8A1,GMNN,GMPR,GPLD1,HDGFL1,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AA,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2AG,HIST1H2AH,HIST1H2BA,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H2BJ,HIST1H2BK,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HIST1H4I,HMGN4,ID4,KAAG1,KDM1B,KIAA0319,KIF13A,LRRC16A,MBOAT1,MRS2,NHLRC1,NRSN1,NUP153,POM121L2,PRL,PRSS16,RBM24,RNF144B,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,SOX4,STMND1,TDP2,TPMT,TRIM38,ZNF322,ZNF391"
TCGA.CM.5341	6	16424116	17285159	355	0.3088	NEUTRAL	NA	3	"ATXN1,RBM24,STMND1"
TCGA.F5.6465	6	16460905	16868866	220	0.3156	NEUTRAL	NA	1	ATXN1
TCGA.AA.3844	6	16865050	17108785	88	-0.194	NEUTRAL	NA	1	STMND1
TCGA.F5.6465	6	16872148	25427857	3279	-0.0108	NEUTRAL	NA	32	"ACOT13,ALDH5A1,C6orf229,C6orf62,CAP2,CDKAL1,DCDC2,DEK,E2F3,FAM65B,FAM8A1,GMNN,GPLD1,HDGFL1,ID4,KAAG1,KDM1B,KIAA0319,KIF13A,LRRC16A,MBOAT1,MRS2,NHLRC1,NRSN1,NUP153,PRL,RBM24,RNF144B,SOX4,STMND1,TDP2,TPMT"
TCGA.AA.A03F	6	17104431	170918030	47421	0	NEUTRAL	NA	933	Too-Many
TCGA.G4.6586	6	17108785	170918030	47447	0.0097	NEUTRAL	NA	933	Too-Many
TCGA.AA.3844	6	17109346	18429919	382	0.0842	NEUTRAL	NA	11	"CAP2,DEK,FAM8A1,KDM1B,KIF13A,NHLRC1,NUP153,RBM24,RNF144B,STMND1,TPMT"
TCGA.G4.6299	6	17149220	24037321	2622	-0.0115	NEUTRAL	NA	17	"CAP2,CDKAL1,DEK,E2F3,FAM8A1,HDGFL1,ID4,KDM1B,KIF13A,MBOAT1,NHLRC1,NUP153,PRL,RBM24,RNF144B,SOX4,TPMT"
TCGA.AA.A010.01A	6	17421740	17898316	73	0.3093	NEUTRAL	NA	4	"CAP2,FAM8A1,KIF13A,NUP153"
TCGA.AG.3909.01A	6	17616294	17669472	16	0.2848	NEUTRAL	NA	1	NUP153
TCGA.AG.A00C.01A	6	17616294	18132305	61	0.0107	NEUTRAL	NA	4	"KIF13A,NHLRC1,NUP153,TPMT"
TCGA.AG.3909.01A	6	17675156	17706458	4	-0.3803	NEUTRAL	NA	1	NUP153
TCGA.CK.5914.01A	6	17987229	18171543	16	-0.4058	NEUTRAL	NA	4	"KDM1B,KIF13A,NHLRC1,TPMT"
TCGA.AG.A00C.01A	6	18161516	18226378	17	-0.0646	NEUTRAL	NA	2	"DEK,KDM1B"
TCGA.AG.3909.01A	6	18171543	18237582	16	0.3703	NEUTRAL	NA	2	"DEK,KDM1B"
TCGA.AG.A00C.01A	6	18264024	24601203	122	-0.102	NEUTRAL	NA	16	"ALDH5A1,CDKAL1,DCDC2,DEK,E2F3,GPLD1,HDGFL1,ID4,KAAG1,KIAA0319,MBOAT1,MRS2,NRSN1,PRL,RNF144B,SOX4"
TCGA.AA.3685	6	18351529	18872433	263	0.1259	NEUTRAL	NA	1	RNF144B
TCGA.AA.A010.01A	6	18399724	19838766	9	-0.1008	NEUTRAL	NA	2	"ID4,RNF144B"
TCGA.AG.3909.01A	6	18399724	24403237	69	0.2629	NEUTRAL	NA	12	"CDKAL1,DCDC2,E2F3,HDGFL1,ID4,KAAG1,MBOAT1,MRS2,NRSN1,PRL,RNF144B,SOX4"
TCGA.AA.3982	6	18401380	18430586	22	0.0438	NEUTRAL	NA	1	RNF144B
TCGA.AA.3982	6	18450919	18664660	123	0.207	NEUTRAL	NA	1	RNF144B
TCGA.AA.3844	6	18451496	22741873	1709	-0.1313	NEUTRAL	NA	8	"CDKAL1,E2F3,HDGFL1,ID4,MBOAT1,PRL,RNF144B,SOX4"
TCGA.AA.3982	6	18686969	19150493	163	-0.0345	NEUTRAL	NA	0	None
TCGA.AA.3685	6	18882997	19262094	121	-0.3497	NEUTRAL	NA	0	None
TCGA.CM.5341	6	19013032	21397409	922	-0.229	NEUTRAL	NA	4	"CDKAL1,E2F3,ID4,MBOAT1"
TCGA.AA.3982	6	19169347	19187203	12	0.2871	NEUTRAL	NA	0	None
TCGA.D5.6533	6	19171740	162474892	43086	0.1234	NEUTRAL	NA	888	Too-Many
TCGA.AA.3982	6	19192997	19610116	152	0.0378	NEUTRAL	NA	0	None
TCGA.AA.3850	6	19197313	22474776	1247	0.04455	NEUTRAL	NA	6	"CDKAL1,E2F3,ID4,MBOAT1,PRL,SOX4"
TCGA.AA.3685	6	19287156	19667418	157	0.0722	NEUTRAL	NA	0	None
TCGA.AA.3941	6	19610116	22558821	1142	-0.2884	NEUTRAL	NA	6	"CDKAL1,E2F3,ID4,MBOAT1,PRL,SOX4"
TCGA.AA.3982	6	19610765	20815259	491	0.2802	NEUTRAL	NA	4	"CDKAL1,E2F3,ID4,MBOAT1"
TCGA.AA.3685	6	19672137	26246663	2586	-0.3774	NEUTRAL	NA	56	"ACOT13,ALDH5A1,C6orf229,C6orf62,CDKAL1,DCDC2,E2F3,FAM65B,GMNN,GPLD1,HDGFL1,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AA,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BA,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,ID4,KAAG1,KIAA0319,LRRC16A,MBOAT1,MRS2,NRSN1,PRL,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,SOX4,TDP2,TRIM38"
TCGA.D5.6536	6	20285618	170918030	46281	0.023	NEUTRAL	NA	920	Too-Many
TCGA.AA.3982	6	20829012	22222128	480	0.3244	NEUTRAL	NA	2	"CDKAL1,SOX4"
TCGA.CK.5914.01A	6	21108612	24403237	31	-0.1132	NEUTRAL	NA	8	"CDKAL1,DCDC2,HDGFL1,KAAG1,MRS2,NRSN1,PRL,SOX4"
TCGA.CM.5341	6	21412022	22902739	588	0.2987	NEUTRAL	NA	3	"HDGFL1,PRL,SOX4"
TCGA.AA.3811	6	22064638	24398928	995	-0.1747	NEUTRAL	NA	5	"DCDC2,HDGFL1,KAAG1,NRSN1,PRL"
TCGA.AA.3982	6	22224220	22741873	272	0.0326	NEUTRAL	NA	2	"HDGFL1,PRL"
TCGA.AA.A00N.01A	6	22287603	24141104	10	-0.3124	NEUTRAL	NA	3	"HDGFL1,NRSN1,PRL"
TCGA.AA.3815.01A	6	22287603	25983410	226	-0.0404	NEUTRAL	NA	24	"ACOT13,ALDH5A1,C6orf229,C6orf62,DCDC2,FAM65B,GMNN,GPLD1,HDGFL1,HIST1H2AA,HIST1H2BA,KAAG1,KIAA0319,LRRC16A,MRS2,NRSN1,PRL,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TDP2,TRIM38"
TCGA.AD.6899	6	22418770	170918030	45376	-0.0946	NEUTRAL	NA	916	Too-Many
TCGA.CM.5348	6	22419181	40733590	6431	0.2808	NEUTRAL	NA	347	Too-Many
TCGA.AA.3850	6	22480822	24046036	679	-0.50445	NEUTRAL	NA	1	HDGFL1
TCGA.DM.A28H	6	22568256	48970404	8808	0.3589	NEUTRAL	NA	446	Too-Many
TCGA.AA.3977	6	22668993	22741873	41	-0.145	NEUTRAL	NA	0	None
TCGA.AA.3973	6	22743402	22755809	13	-0.5133	NEUTRAL	NA	0	None
TCGA.AA.3973	6	22757653	22902739	39	-0.012	NEUTRAL	NA	0	None
TCGA.AA.3982	6	22757653	24210083	580	-0.1048	NEUTRAL	NA	2	"DCDC2,NRSN1"
TCGA.AA.3864	6	22757653	29770757	2200	0.0461	NEUTRAL	NA	127	Too-Many
TCGA.AA.3977	6	22757653	148290944	36465	-0.0425	NEUTRAL	NA	807	Too-Many
TCGA.AA.3844	6	22766714	24193868	578	-0.3896	NEUTRAL	NA	2	"DCDC2,NRSN1"
TCGA.CM.5341	6	22909332	25186567	925	0.2764	NEUTRAL	NA	13	"ACOT13,ALDH5A1,C6orf229,C6orf62,DCDC2,FAM65B,GMNN,GPLD1,KAAG1,KIAA0319,MRS2,NRSN1,TDP2"
TCGA.AD.6965	6	22909332	32953710	3509	0.0505	NEUTRAL	NA	250	Too-Many
TCGA.AA.A01S	6	22909332	77422496	15603	0.00295	NEUTRAL	NA	532	Too-Many
TCGA.AA.3973	6	22909332	170918030	45262	-0.0135	NEUTRAL	NA	915	Too-Many
TCGA.AA.3488	6	23313331	170918030	45117	0.0033	NEUTRAL	NA	915	Too-Many
TCGA.F4.6854	6	23835342	25945210	839	0.3529	NEUTRAL	NA	21	"ACOT13,ALDH5A1,C6orf229,C6orf62,DCDC2,FAM65B,GMNN,GPLD1,HIST1H2AA,HIST1H2BA,KAAG1,KIAA0319,LRRC16A,MRS2,NRSN1,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TDP2"
TCGA.G4.6299	6	24045413	31333938	2417	0.2958	NEUTRAL	NA	171	Too-Many
TCGA.AA.3941	6	24052525	24353279	109	-0.4376	NEUTRAL	NA	2	"DCDC2,NRSN1"
TCGA.AA.3850	6	24052525	24365855	111	-0.05525	NEUTRAL	NA	3	"DCDC2,KAAG1,NRSN1"
TCGA.AG.4009.01A	6	24145729	24472741	38	-0.002	NEUTRAL	NA	5	"DCDC2,GPLD1,KAAG1,MRS2,NRSN1"
TCGA.AA.3844	6	24209885	28671650	1276	-0.0357	NEUTRAL	NA	105	Too-Many
TCGA.AA.3982	6	24219379	25520124	526	0.3389	NEUTRAL	NA	13	"ACOT13,ALDH5A1,C6orf229,C6orf62,DCDC2,FAM65B,GMNN,GPLD1,KAAG1,KIAA0319,LRRC16A,MRS2,TDP2"
TCGA.A6.6653	6	24278868	24422542	53	-0.0401	NEUTRAL	NA	3	"DCDC2,KAAG1,MRS2"
TCGA.CM.6170	6	24278868	156477759	39064	0.1305	NEUTRAL	NA	848	Too-Many
TCGA.AA.A00L.01A	6	24289009	31639661	755	-0.1253	NEUTRAL	NA	189	Too-Many
TCGA.AA.3941	6	24353435	24919910	206	-0.0041	NEUTRAL	NA	12	"ACOT13,ALDH5A1,C6orf229,C6orf62,DCDC2,FAM65B,GMNN,GPLD1,KAAG1,KIAA0319,MRS2,TDP2"
TCGA.AZ.4682	6	24365855	96365165	20639	0.3192	NEUTRAL	NA	589	Too-Many
TCGA.AA.3811	6	24399679	47774406	7770	0.2302	NEUTRAL	NA	441	Too-Many
TCGA.AA.A01Q.01A	6	24405336	24418657	8	-0.4494	NEUTRAL	NA	1	MRS2
TCGA.AA.A01Q.01A	6	24423123	25913475	114	0.1383	NEUTRAL	NA	18	"ACOT13,ALDH5A1,C6orf229,C6orf62,FAM65B,GMNN,GPLD1,HIST1H2AA,HIST1H2BA,KIAA0319,LRRC16A,MRS2,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TDP2"
TCGA.CK.5914.01A	6	24423761	24503474	24	0.0015	NEUTRAL	NA	3	"ALDH5A1,GPLD1,MRS2"
TCGA.AG.3909.01A	6	24429212	24522954	27	-0.1981	NEUTRAL	NA	2	"ALDH5A1,GPLD1"
TCGA.AA.A00F.01A	6	24436777	41029040	1895	0.2564	NEUTRAL	NA	345	Too-Many
TCGA.A6.6653	6	24439599	26825467	832	0.0083	NEUTRAL	NA	60	"ABT1,ACOT13,ALDH5A1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,C6orf229,C6orf62,FAM65B,GMNN,GPLD1,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AA,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BA,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HMGN4,KIAA0319,LRRC16A,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TDP2,TRIM38,ZNF322"
TCGA.AA.A010.01A	6	24460465	24522954	18	-0.2332	NEUTRAL	NA	2	"ALDH5A1,GPLD1"
TCGA.AA.A02H.01A	6	24502692	30514861	495	0.2515	NEUTRAL	NA	137	Too-Many
TCGA.AG.4009.01A	6	24522954	27435569	259	-0.0373	NEUTRAL	NA	68	"ABT1,ACOT13,ALDH5A1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,C6orf229,C6orf62,FAM65B,GMNN,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AA,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2AG,HIST1H2AH,HIST1H2BA,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H2BJ,HIST1H2BK,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HIST1H4I,HMGN4,KIAA0319,LRRC16A,POM121L2,PRSS16,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TDP2,TRIM38,ZNF184,ZNF322,ZNF391"
TCGA.CK.5914.01A	6	24650969	24785839	23	-0.5143	NEUTRAL	NA	4	"ACOT13,C6orf62,GMNN,TDP2"
TCGA.AG.3909.01A	6	24666730	24708958	6	-0.2135	NEUTRAL	NA	3	"ACOT13,C6orf62,TDP2"
TCGA.AZ.4684.01A	6	24784313	25819685	99	0.3576	NEUTRAL	NA	9	"C6orf229,FAM65B,GMNN,HIST1H2AA,HIST1H2BA,LRRC16A,SCGN,SLC17A1,SLC17A4"
TCGA.AG.3909.01A	6	24843059	26251841	135	0.3109	NEUTRAL	NA	39	"FAM65B,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AA,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BA,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,LRRC16A,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TRIM38"
TCGA.AG.A00C.01A	6	24843059	29576967	338	-0.1265	NEUTRAL	NA	111	Too-Many
TCGA.AA.A010.01A	6	24852733	25450801	28	-0.3362	NEUTRAL	NA	2	"FAM65B,LRRC16A"
TCGA.AA.3509.01A	6	24875872	25819685	74	0.2176	NEUTRAL	NA	7	"FAM65B,HIST1H2AA,HIST1H2BA,LRRC16A,SCGN,SLC17A1,SLC17A4"
TCGA.AA.3850	6	24919910	25642576	318	0.04165	NEUTRAL	NA	2	"FAM65B,LRRC16A"
TCGA.AA.3941	6	24920906	25859553	394	-0.3822	NEUTRAL	NA	8	"FAM65B,HIST1H2AA,HIST1H2BA,LRRC16A,SCGN,SLC17A1,SLC17A3,SLC17A4"
TCGA.G4.6626	6	24954234	101589019	21839	0.2511	NEUTRAL	NA	598	Too-Many
TCGA.AA.A01V	6	24954234	170918030	44447	-0.0008	NEUTRAL	NA	903	Too-Many
TCGA.CM.5341	6	25200413	25342754	49	-0.1783	NEUTRAL	NA	1	LRRC16A
TCGA.CM.5341	6	25343822	25520771	91	0.3194	NEUTRAL	NA	1	LRRC16A
TCGA.F5.6465	6	25428953	170918030	44268	0.3406	NEUTRAL	NA	902	Too-Many
TCGA.CK.5914.01A	6	25450801	25762140	42	0.2605	NEUTRAL	NA	5	"HIST1H2AA,HIST1H2BA,LRRC16A,SCGN,SLC17A4"
TCGA.AA.A010.01A	6	25466042	25619633	27	0.2665	NEUTRAL	NA	1	LRRC16A
TCGA.AA.3982	6	25520771	25891858	143	0.0075	NEUTRAL	NA	7	"HIST1H2AA,HIST1H2BA,LRRC16A,SCGN,SLC17A1,SLC17A3,SLC17A4"
TCGA.CM.5341	6	25534676	26158992	210	-0.224	NEUTRAL	NA	25	"HFE,HIST1H1A,HIST1H1C,HIST1H1E,HIST1H1T,HIST1H2AA,HIST1H2AB,HIST1H2AC,HIST1H2BA,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H4A,HIST1H4B,HIST1H4C,LRRC16A,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TRIM38"
TCGA.AD.A5EK	6	25534676	162998048	40730	-0.028	NEUTRAL	NA	868	Too-Many
TCGA.AA.3850	6	25653400	25779391	49	-0.05515	NEUTRAL	NA	4	"HIST1H2AA,HIST1H2BA,SCGN,SLC17A4"
TCGA.AA.A010.01A	6	25762140	25779244	8	-0.4447	NEUTRAL	NA	1	SLC17A4
TCGA.CK.5914.01A	6	25799005	26271155	67	0.1863	NEUTRAL	NA	35	"HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,SLC17A1,SLC17A2,SLC17A3,TRIM38"
TCGA.AA.A00D.01A	6	25801077	29230433	240	-0.2263	NEUTRAL	NA	94	"ABT1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,GPX5,GPX6,HFE,HIST1H1A,HIST1H1B,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2AG,HIST1H2AH,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H2BJ,HIST1H2BK,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HIST1H4I,HIST1H4J,HIST1H4K,HIST1H4L,HMGN4,NKAPL,OR2B2,OR2B3,OR2B6,OR2J2,OR2J3,OR2W1,PGBD1,POM121L2,PRSS16,SLC17A1,SLC17A2,SLC17A3,TRIM27,TRIM38,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF184,ZNF311,ZNF322,ZNF391,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.3861.01A	6	25811579	35426033	1507	0.1165	NEUTRAL	NA	279	Too-Many
TCGA.AA.3862.01A	6	25849995	35426033	1506	0.3216	NEUTRAL	NA	278	Too-Many
TCGA.AA.3941	6	25880906	29098368	684	-0.1688	NEUTRAL	NA	91	"ABT1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,GPX5,GPX6,HFE,HIST1H1A,HIST1H1B,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2AG,HIST1H2AH,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H2BJ,HIST1H2BK,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HIST1H4I,HIST1H4J,HIST1H4K,HIST1H4L,HMGN4,NKAPL,OR2B2,OR2B3,OR2B6,OR2J3,OR2W1,PGBD1,POM121L2,PRSS16,SLC17A2,TRIM27,TRIM38,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF184,ZNF311,ZNF322,ZNF391,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.3850	6	25903307	26825467	235	0.30885	NEUTRAL	NA	44	"ABT1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HMGN4,SLC17A2,TRIM38,ZNF322"
TCGA.AZ.4684.01A	6	25913475	31948187	867	0.1286	NEUTRAL	NA	197	Too-Many
TCGA.AA.3509.01A	6	25913475	31965412	871	0.0246	NEUTRAL	NA	200	Too-Many
TCGA.DM.A28A	6	25945210	170918030	43960	0.0353	NEUTRAL	NA	894	Too-Many
TCGA.F4.6854	6	25950381	27312848	293	-0.2735	NEUTRAL	NA	50	"ABT1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2AG,HIST1H2AH,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H2BJ,HIST1H2BK,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HIST1H4I,HMGN4,POM121L2,PRSS16,TRIM38,ZNF322"
TCGA.CM.4746	6	25997457	170918030	44030	0.0042	NEUTRAL	NA	893	Too-Many
TCGA.AA.3930.01A	6	26017275	26246917	35	-0.1213	NEUTRAL	NA	28	"HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G"
TCGA.AG.3906.01A	6	26017275	26273155	39	-0.4686	NEUTRAL	NA	31	"HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G"
TCGA.AG.A016.01A	6	26017275	30863141	460	0.0325	NEUTRAL	NA	134	Too-Many
TCGA.AA.3667	6	26033505	170918030	44066	-0.0079	NEUTRAL	NA	888	Too-Many
TCGA.AA.3815.01A	6	26056036	31965412	846	0.0372	NEUTRAL	NA	190	Too-Many
TCGA.AA.A02K.01A	6	26104129	26158737	8	-0.4946	NEUTRAL	NA	6	"HIST1H1E,HIST1H1T,HIST1H2AC,HIST1H2BC,HIST1H2BD,HIST1H4C"
TCGA.AA.A02K.01A	6	26184015	31678266	415	0.0375	NEUTRAL	NA	155	Too-Many
TCGA.AA.3685	6	26246783	36085324	3038	-0.0647	NEUTRAL	NA	260	Too-Many
TCGA.AA.3930.01A	6	26250406	31137955	519	0.335	NEUTRAL	NA	119	Too-Many
TCGA.AG.3906.01A	6	26285384	26545386	51	0.1284	NEUTRAL	NA	8	"BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HIST1H4H,HMGN4"
TCGA.AA.A01Q.01A	6	26390261	26545386	39	0.0957	NEUTRAL	NA	6	"BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A3,HMGN4"
TCGA.AG.3909.01A	6	26505115	28403614	98	-0.1285	NEUTRAL	NA	43	"ABT1,BTN1A1,HIST1H1B,HIST1H2AG,HIST1H2AH,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BJ,HIST1H2BK,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4I,HIST1H4J,HIST1H4K,HIST1H4L,HMGN4,NKAPL,OR2B2,OR2B6,PGBD1,POM121L2,PRSS16,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF184,ZNF322,ZNF391,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.CK.5914.01A	6	26505115	29012558	138	-0.186	NEUTRAL	NA	49	"ABT1,BTN1A1,GPX5,GPX6,HIST1H1B,HIST1H2AG,HIST1H2AH,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BJ,HIST1H2BK,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4I,HIST1H4J,HIST1H4K,HIST1H4L,HMGN4,NKAPL,OR2B2,OR2B6,OR2W1,PGBD1,POM121L2,PRSS16,TRIM27,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF184,ZNF311,ZNF322,ZNF391,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.A029.01A	6	26505115	29633877	169	-0.448	NEUTRAL	NA	64	"ABT1,BTN1A1,GABBR1,GPX5,GPX6,HIST1H1B,HIST1H2AG,HIST1H2AH,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BJ,HIST1H2BK,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4I,HIST1H4J,HIST1H4K,HIST1H4L,HMGN4,MAS1L,MOG,NKAPL,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B2,OR2B3,OR2B6,OR2H1,OR2H2,OR2J2,OR2J3,OR2W1,OR5V1,PGBD1,POM121L2,PRSS16,TRIM27,UBD,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF184,ZNF311,ZNF322,ZNF391,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AG.3906.01A	6	26597184	27218798	15	-0.3413	NEUTRAL	NA	8	"ABT1,HIST1H2AG,HIST1H2AH,HIST1H2BJ,HIST1H2BK,HIST1H4I,PRSS16,ZNF322"
TCGA.A6.6648	6	26698727	32781553	1993	0.2063	NEUTRAL	NA	179	Too-Many
TCGA.AA.3850	6	26861037	27003482	17	-0.38205	NEUTRAL	NA	0	None
TCGA.AA.3982	6	26948173	29019231	424	0.3182	NEUTRAL	NA	45	"GPX5,GPX6,HIST1H1B,HIST1H2AG,HIST1H2AH,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BJ,HIST1H2BK,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4I,HIST1H4J,HIST1H4K,HIST1H4L,NKAPL,OR2B2,OR2B6,OR2W1,PGBD1,POM121L2,PRSS16,TRIM27,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF184,ZNF311,ZNF391,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.3556	6	26948173	79020438	14583	-0.01	NEUTRAL	NA	470	Too-Many
TCGA.A6.6782	6	26948173	121774401	26825	-0.0727	NEUTRAL	NA	633	Too-Many
TCGA.A6.6653	6	26948194	39859884	4278	-0.0196	NEUTRAL	NA	280	Too-Many
TCGA.AA.3850	6	27005330	27910738	157	0.32935	NEUTRAL	NA	26	"HIST1H1B,HIST1H2AG,HIST1H2AH,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BJ,HIST1H2BK,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4I,HIST1H4J,HIST1H4K,HIST1H4L,OR2B2,POM121L2,PRSS16,ZNF184,ZNF391"
TCGA.AA.A00N.01A	6	27215472	28134290	53	-0.0217	NEUTRAL	NA	25	"HIST1H1B,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4J,HIST1H4K,HIST1H4L,OR2B2,OR2B6,POM121L2,PRSS16,ZKSCAN8,ZNF165,ZNF184,ZNF391,ZSCAN16"
TCGA.AA.A01Q.01A	6	27219507	27782781	20	0.2744	NEUTRAL	NA	8	"HIST1H2AI,HIST1H2AJ,HIST1H2BL,HIST1H3H,POM121L2,PRSS16,ZNF184,ZNF391"
TCGA.AG.3906.01A	6	27219507	27805685	24	0.06	NEUTRAL	NA	12	"HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2BL,HIST1H2BM,HIST1H3H,HIST1H4J,HIST1H4K,POM121L2,PRSS16,ZNF184,ZNF391"
TCGA.F4.6854	6	27314070	28341876	224	0.1159	NEUTRAL	NA	30	"HIST1H1B,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4J,HIST1H4K,HIST1H4L,NKAPL,OR2B2,OR2B6,PGBD1,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF184,ZNF391,ZSCAN16,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.A010.01A	6	27368098	27368873	2	0.2477	NEUTRAL	NA	1	ZNF391
TCGA.AG.3611.01A	6	27775252	28474060	64	-0.1322	NEUTRAL	NA	31	"GPX6,HIST1H1B,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4J,HIST1H4K,HIST1H4L,NKAPL,OR2B2,OR2B6,PGBD1,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.A00O.01A	6	27777800	31807273	602	-0.2327	NEUTRAL	NA	132	Too-Many
TCGA.AG.4009.01A	6	27806763	28327312	44	0.01	NEUTRAL	NA	20	"HIST1H1B,HIST1H2AL,HIST1H2AM,HIST1H2BN,HIST1H2BO,HIST1H3I,HIST1H3J,HIST1H4L,NKAPL,OR2B2,OR2B6,PGBD1,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZSCAN16,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.A01C.01A	6	27806763	28971629	83	-0.0745	NEUTRAL	NA	27	"GPX5,GPX6,HIST1H1B,HIST1H2AL,HIST1H2AM,HIST1H2BN,HIST1H2BO,HIST1H3I,HIST1H3J,HIST1H4L,NKAPL,OR2B2,OR2B6,PGBD1,TRIM27,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF311,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AG.3906.01A	6	27833105	29571280	104	-0.1567	NEUTRAL	NA	41	"GABBR1,GPX5,GPX6,HIST1H1B,HIST1H2AL,HIST1H2AM,HIST1H2BO,HIST1H3I,HIST1H3J,HIST1H4L,MAS1L,NKAPL,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B2,OR2B3,OR2B6,OR2H1,OR2H2,OR2J2,OR2J3,OR2W1,OR5V1,PGBD1,TRIM27,UBD,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF311,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AG.A014.01A	6	27833105	41754148	1857	-0.0562	NEUTRAL	NA	281	Too-Many
TCGA.AA.3850	6	27925366	28543263	170	-0.06555	NEUTRAL	NA	16	"GPX5,GPX6,NKAPL,OR2B6,PGBD1,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AF.2693	6	28004555	42836582	5185	0.362	NEUTRAL	NA	287	Too-Many
TCGA.AA.A01Q.01A	6	28053903	30570573	229	0.1148	NEUTRAL	NA	54	"ABCF1,GABBR1,GNL1,GPX5,GPX6,HLA-A,HLA-E,HLA-F,HLA-G,LOC554223,MAS1L,MOG,NKAPL,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2H2,OR2J2,OR2J3,OR2W1,OR5V1,PGBD1,PPP1R10,PPP1R11,PRR3,RNF39,RPP21,TRIM10,TRIM15,TRIM26,TRIM27,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,UBD,ZBED9,ZFP57,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF311,ZNRD1,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.3952	6	28077601	58774715	9669	0.0519	NEUTRAL	NA	404	Too-Many
TCGA.AG.4009.01A	6	28329054	28333736	5	0.3406	NEUTRAL	NA	1	ZKSCAN3
TCGA.AA.A00N.01A	6	28329054	28358179	7	-0.401	NEUTRAL	NA	2	"ZKSCAN3,ZSCAN12"
TCGA.CM.5341	6	28349925	28916971	109	0.06	NEUTRAL	NA	6	"GPX5,GPX6,TRIM27,ZBED9,ZSCAN12,ZSCAN23"
TCGA.F4.6854	6	28349925	32236141	1435	-0.2858	NEUTRAL	NA	132	Too-Many
TCGA.AG.4009.01A	6	28358179	28403614	4	-0.1444	NEUTRAL	NA	2	"ZSCAN12,ZSCAN23"
TCGA.D5.6535	6	28365514	48930864	6910	0.3069	NEUTRAL	NA	344	Too-Many
TCGA.AA.A010.01A	6	28402242	28483381	8	-0.0505	NEUTRAL	NA	2	"GPX6,ZSCAN23"
TCGA.AG.4009.01A	6	28483381	29942931	97	-0.1853	NEUTRAL	NA	26	"GABBR1,GPX5,GPX6,HLA-A,HLA-F,HLA-G,LOC554223,MAS1L,MOG,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2H2,OR2J2,OR2J3,OR2W1,OR5V1,TRIM27,UBD,ZBED9,ZFP57,ZNF311"
TCGA.AA.A00N.01A	6	28493737	28871817	12	0.0386	NEUTRAL	NA	3	"GPX5,TRIM27,ZBED9"
TCGA.AG.3909.01A	6	28493737	28871817	12	0.1925	NEUTRAL	NA	3	"GPX5,TRIM27,ZBED9"
TCGA.AF.3914.01A	6	28493737	31750822	542	0.253	NEUTRAL	NA	98	"ABCF1,ABHD16A,AIF1,APOM,ATAT1,ATP6V1G2,BAG6,C6orf136,C6orf15,C6orf25,C6orf47,CCHCR1,CDSN,CLIC1,CSNK2B,DDAH2,DDR1,DDX39B,DHX16,DPCR1,FLOT1,GABBR1,GNL1,GPANK1,GPX5,GTF2H4,HLA-A,HLA-B,HLA-C,HLA-E,HLA-F,HLA-G,IER3,LOC554223,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MAS1L,MCCD1,MDC1,MICA,MICB,MOG,MRPS18B,MSH5,MUC21,MUC22,NCR3,NFKBIL1,NRM,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2H2,OR2J2,OR2J3,OR2W1,OR5V1,POU5F1,PPP1R10,PPP1R11,PPP1R18,PRR3,PRRC2A,PSORS1C1,PSORS1C2,RNF39,RPP21,SAPCD1,SFTA2,TCF19,TNF,TRIM10,TRIM15,TRIM26,TRIM27,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,TUBB,UBD,VARS,VARS2,VWA7,ZBED9,ZFP57,ZNF311,ZNRD1"
TCGA.AG.3891.01A	6	28497176	28879383	15	0.2816	NEUTRAL	NA	3	"GPX5,TRIM27,ZBED9"
TCGA.AG.3611.01A	6	28539681	28889620	12	-0.1274	NEUTRAL	NA	2	"TRIM27,ZBED9"
TCGA.AA.A010.01A	6	28539681	29600024	66	0.2866	NEUTRAL	NA	18	"GABBR1,MAS1L,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2H2,OR2J2,OR2J3,OR2W1,OR5V1,TRIM27,UBD,ZBED9,ZNF311"
TCGA.AA.3688	6	28606396	162306297	39983	-0.0143	NEUTRAL	NA	775	Too-Many
TCGA.AA.3844	6	28677757	28982286	46	0.2538	NEUTRAL	NA	2	"TRIM27,ZNF311"
TCGA.AG.3891.01A	6	28887769	28967677	7	0.0142	NEUTRAL	NA	2	"TRIM27,ZNF311"
TCGA.AG.3611.01A	6	28890938	28971233	6	-0.4921	NEUTRAL	NA	2	"TRIM27,ZNF311"
TCGA.AG.3891.01A	6	28971233	29429510	18	-0.3223	NEUTRAL	NA	12	"OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2J2,OR2J3,OR2W1,OR5V1,ZNF311"
TCGA.AG.3611.01A	6	28971629	38976539	1501	-0.1168	NEUTRAL	NA	230	Too-Many
TCGA.AA.3844	6	28987057	29057970	18	-0.3024	NEUTRAL	NA	2	"OR2B3,OR2W1"
TCGA.AA.A00N.01A	6	29011983	29141381	6	-0.0622	NEUTRAL	NA	4	"OR2B3,OR2J2,OR2J3,OR2W1"
TCGA.AA.3982	6	29023213	29419999	85	-0.1254	NEUTRAL	NA	9	"OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2J2,OR2J3,OR5V1"
TCGA.AA.3844	6	29073093	29098368	5	0.1815	NEUTRAL	NA	1	OR2J3
TCGA.AA.3844	6	29106467	29435354	82	-0.4043	NEUTRAL	NA	8	"OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2H1,OR2J2,OR5V1"
TCGA.AA.A01C.01A	6	29394499	32085619	639	-0.2433	NEUTRAL	NA	107	Too-Many
TCGA.AA.3850	6	29408475	29545714	70	0.07545	NEUTRAL	NA	4	"MAS1L,OR10C1,OR2H1,UBD"
TCGA.AG.3891.01A	6	29430540	29633877	27	-0.0451	NEUTRAL	NA	6	"GABBR1,MAS1L,MOG,OR2H1,OR2H2,UBD"
TCGA.AA.3941	6	29435354	37869710	2997	-0.0094	NEUTRAL	NA	215	Too-Many
TCGA.AA.3844	6	29440256	32745526	1445	0.1357	NEUTRAL	NA	123	Too-Many
TCGA.AA.A00N.01A	6	29523620	29576330	10	0.1707	NEUTRAL	NA	3	"GABBR1,OR2H2,UBD"
TCGA.CK.5914.01A	6	29523620	29640229	34	0.1408	NEUTRAL	NA	5	"GABBR1,MOG,OR2H2,UBD,ZFP57"
TCGA.AG.3909.01A	6	29523620	29691171	36	-0.4102	NEUTRAL	NA	6	"GABBR1,HLA-F,MOG,OR2H2,UBD,ZFP57"
TCGA.AA.3850	6	29546228	31256629	827	0.34675	NEUTRAL	NA	49	"ABCF1,ATAT1,C6orf136,C6orf15,CCHCR1,CDSN,DDR1,DHX16,DPCR1,FLOT1,GABBR1,GNL1,GTF2H4,HLA-A,HLA-C,HLA-E,HLA-F,HLA-G,IER3,LOC554223,MDC1,MOG,MRPS18B,MUC21,MUC22,NRM,OR2H2,POU5F1,PPP1R10,PPP1R11,PPP1R18,PRR3,PSORS1C1,PSORS1C2,RNF39,RPP21,SFTA2,TCF19,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,TUBB,VARS2,ZFP57,ZNRD1"
TCGA.AG.3906.01A	6	29572222	29588907	11	0.205	NEUTRAL	NA	1	GABBR1
TCGA.AA.A00D.01A	6	29576330	31079119	252	-0.078	NEUTRAL	NA	41	"ABCF1,ATAT1,C6orf136,C6orf15,DDR1,DHX16,DPCR1,FLOT1,GABBR1,GNL1,GTF2H4,HLA-A,HLA-E,HLA-F,HLA-G,IER3,LOC554223,MDC1,MOG,MRPS18B,MUC21,MUC22,NRM,PPP1R10,PPP1R11,PPP1R18,PRR3,RNF39,RPP21,SFTA2,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,TUBB,VARS2,ZFP57,ZNRD1"
TCGA.AA.A01F.01A	6	29576330	31740740	444	0.0403	NEUTRAL	NA	79	"ABCF1,ABHD16A,AIF1,APOM,ATAT1,ATP6V1G2,BAG6,C6orf136,C6orf15,C6orf25,C6orf47,CCHCR1,CDSN,CLIC1,CSNK2B,DDAH2,DDR1,DDX39B,DHX16,DPCR1,FLOT1,GABBR1,GNL1,GPANK1,GTF2H4,HLA-A,HLA-B,HLA-C,HLA-E,HLA-F,HLA-G,IER3,LOC554223,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MDC1,MICA,MICB,MOG,MRPS18B,MSH5,MUC21,MUC22,NCR3,NFKBIL1,NRM,POU5F1,PPP1R10,PPP1R11,PPP1R18,PRR3,PRRC2A,PSORS1C1,PSORS1C2,RNF39,RPP21,SAPCD1,SFTA2,TCF19,TNF,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,TUBB,VARS2,VWA7,ZFP57,ZNRD1"
TCGA.AG.A00C.01A	6	29578641	30080129	60	0.254	NEUTRAL	NA	11	"GABBR1,HLA-A,HLA-F,HLA-G,LOC554223,MOG,PPP1R11,RNF39,TRIM31,ZFP57,ZNRD1"
TCGA.AG.3906.01A	6	29589465	29624933	8	-0.2265	NEUTRAL	NA	2	"GABBR1,MOG"
TCGA.AA.A010.01A	6	29624933	29694748	19	-0.4898	NEUTRAL	NA	3	"HLA-F,MOG,ZFP57"
TCGA.AG.3906.01A	6	29627084	29644611	12	0.3598	NEUTRAL	NA	2	"MOG,ZFP57"
TCGA.AA.A029.01A	6	29637888	30552030	109	-0.2248	NEUTRAL	NA	21	"ABCF1,GNL1,HLA-A,HLA-E,HLA-F,HLA-G,LOC554223,MOG,PPP1R11,PRR3,RNF39,RPP21,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,ZFP57,ZNRD1"
TCGA.CK.5914.01A	6	29643126	30955725	251	-0.2487	NEUTRAL	NA	37	"ABCF1,ATAT1,C6orf136,DDR1,DHX16,DPCR1,FLOT1,GNL1,GTF2H4,HLA-A,HLA-E,HLA-F,HLA-G,IER3,LOC554223,MDC1,MRPS18B,MUC21,NRM,PPP1R10,PPP1R11,PPP1R18,PRR3,RNF39,RPP21,SFTA2,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,TUBB,VARS2,ZFP57,ZNRD1"
TCGA.AG.3891.01A	6	29643662	30572723	119	0.0137	NEUTRAL	NA	21	"ABCF1,GNL1,HLA-A,HLA-E,HLA-F,HLA-G,LOC554223,PPP1R10,PPP1R11,PRR3,RNF39,RPP21,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,ZFP57,ZNRD1"
TCGA.A6.6138	6	29670535	43045461	4769	0.3227	NEUTRAL	NA	267	Too-Many
TCGA.AG.3906.01A	6	29691171	30539210	95	-0.1982	NEUTRAL	NA	19	"ABCF1,GNL1,HLA-A,HLA-E,HLA-F,HLA-G,LOC554223,PPP1R11,PRR3,RNF39,RPP21,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,ZNRD1"
TCGA.AA.3864	6	29778108	170918030	42967	-0.0059	NEUTRAL	NA	788	Too-Many
TCGA.NH.A8F7	6	29898896	30343250	203	-0.0109	NEUTRAL	NA	12	"HLA-A,PPP1R11,RNF39,RPP21,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,ZNRD1"
TCGA.AG.A026	6	29898896	72215831	11871	0.0081	NEUTRAL	NA	384	Too-Many
TCGA.AA.3679	6	29898896	77422496	13353	0.3641	NEUTRAL	NA	404	Too-Many
TCGA.CM.6680	6	29899676	31353688	694	-0.0001	NEUTRAL	NA	43	"ABCF1,ATAT1,C6orf136,C6orf15,CCHCR1,CDSN,DDR1,DHX16,DPCR1,FLOT1,GNL1,GTF2H4,HLA-A,HLA-B,HLA-C,HLA-E,IER3,MDC1,MRPS18B,MUC21,MUC22,NRM,POU5F1,PPP1R10,PPP1R11,PPP1R18,PRR3,PSORS1C1,PSORS1C2,RNF39,RPP21,SFTA2,TCF19,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,TUBB,VARS2,ZNRD1"
TCGA.AA.3561	6	29899676	36749071	2294	-0.3042	NEUTRAL	NA	193	Too-Many
TCGA.CM.5349	6	29899676	55217515	8379	0.1152	NEUTRAL	NA	358	Too-Many
TCGA.AA.3526	6	29899676	115191060	24386	-0.0041	NEUTRAL	NA	538	Too-Many
TCGA.T9.A92H	6	29899676	162306978	39499	0.0399	NEUTRAL	NA	753	Too-Many
TCGA.AA.3982	6	29968274	30026349	34	-0.0062	NEUTRAL	NA	0	None
TCGA.AA.3870	6	30000279	31941556	817	0.1557	NEUTRAL	NA	88	"ABCF1,ABHD16A,AIF1,APOM,ATAT1,ATP6V1G2,BAG6,C2,C6orf136,C6orf15,C6orf25,C6orf47,C6orf48,CCHCR1,CDSN,CFB,CLIC1,CSNK2B,DDAH2,DDR1,DDX39B,DHX16,DPCR1,DXO,EHMT2,FLOT1,GNL1,GPANK1,GTF2H4,HLA-B,HLA-C,HLA-E,HSPA1A,HSPA1B,HSPA1L,IER3,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MDC1,MICA,MICB,MRPS18B,MSH5,MUC21,MUC22,NCR3,NELFE,NEU1,NFKBIL1,NRM,POU5F1,PPP1R10,PPP1R11,PPP1R18,PRR3,PRRC2A,PSORS1C1,PSORS1C2,RNF39,RPP21,SAPCD1,SFTA2,SKIV2L,SLC44A4,STK19,TCF19,TNF,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,TUBB,VARS,VARS2,VWA7,ZBTB12,ZNRD1"
TCGA.CM.5341	6	30047964	30680915	222	0.0325	NEUTRAL	NA	20	"ABCF1,ATAT1,C6orf136,DHX16,GNL1,HLA-E,MDC1,MRPS18B,NRM,PPP1R10,PPP1R18,PRR3,RPP21,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40"
TCGA.AG.4009.01A	6	30071325	30228944	36	0.0525	NEUTRAL	NA	5	"TRIM10,TRIM15,TRIM26,TRIM31,TRIM40"
TCGA.AG.3909.01A	6	30104765	30131412	13	-0.2515	NEUTRAL	NA	3	"TRIM10,TRIM15,TRIM40"
TCGA.AA.A00N.01A	6	30104765	30228944	28	-0.1392	NEUTRAL	NA	4	"TRIM10,TRIM15,TRIM26,TRIM40"
TCGA.AG.A00C.01A	6	30104765	30228944	28	7.00E-04	NEUTRAL	NA	4	"TRIM10,TRIM15,TRIM26,TRIM40"
TCGA.AG.3909.01A	6	30139592	30228944	10	-0.3799	NEUTRAL	NA	2	"TRIM15,TRIM26"
TCGA.AG.4009.01A	6	30229995	30460100	16	-0.4042	NEUTRAL	NA	4	"HLA-E,RPP21,TRIM39,TRIM39-RPP21"
TCGA.AG.A00C.01A	6	30229995	30955725	174	0.2996	NEUTRAL	NA	24	"ABCF1,ATAT1,C6orf136,DDR1,DHX16,DPCR1,FLOT1,GNL1,GTF2H4,HLA-E,IER3,MDC1,MRPS18B,MUC21,NRM,PPP1R10,PPP1R18,PRR3,RPP21,SFTA2,TRIM39,TRIM39-RPP21,TUBB,VARS2"
TCGA.AA.A010.01A	6	30297065	30309437	7	-0.341	NEUTRAL	NA	2	"TRIM39,TRIM39-RPP21"
TCGA.NH.A8F7	6	30348831	157126586	37324	0	NEUTRAL	NA	710	Too-Many
TCGA.AG.3909.01A	6	30513801	30646909	78	-0.4143	NEUTRAL	NA	9	"ABCF1,ATAT1,C6orf136,DHX16,GNL1,MRPS18B,PPP1R10,PPP1R18,PRR3"
TCGA.AG.4009.01A	6	30513801	30670860	85	0.2881	NEUTRAL	NA	11	"ABCF1,ATAT1,C6orf136,DHX16,GNL1,MDC1,MRPS18B,NRM,PPP1R10,PPP1R18,PRR3"
TCGA.AG.A025.01A	6	30520192	33754451	932	-0.465	NEUTRAL	NA	136	Too-Many
TCGA.AA.A02H.01A	6	30520192	42638354	1666	-0.0768	NEUTRAL	NA	234	Too-Many
TCGA.AA.A024.01A	6	30523848	30548141	11	0.2651	NEUTRAL	NA	3	"ABCF1,GNL1,PRR3"
TCGA.CI.6621	6	30541851	46074655	5227	0.3025	NEUTRAL	NA	285	Too-Many
TCGA.AG.3906.01A	6	30545111	30856937	95	0.1454	NEUTRAL	NA	13	"ABCF1,ATAT1,C6orf136,DDR1,DHX16,FLOT1,IER3,MDC1,MRPS18B,NRM,PPP1R10,PPP1R18,TUBB"
TCGA.AA.3967.01A	6	30545111	31560406	231	0.0684	NEUTRAL	NA	39	"ABCF1,ATAT1,ATP6V1G2,C6orf136,C6orf15,CCHCR1,CDSN,DDR1,DDX39B,DHX16,DPCR1,FLOT1,GTF2H4,HLA-B,HLA-C,IER3,LST1,LTA,LTB,MCCD1,MDC1,MICA,MICB,MRPS18B,MUC21,MUC22,NCR3,NFKBIL1,NRM,POU5F1,PPP1R10,PPP1R18,PSORS1C1,PSORS1C2,SFTA2,TCF19,TNF,TUBB,VARS2"
TCGA.AA.A00N.01A	6	30551347	30594936	27	0.1593	NEUTRAL	NA	4	"ABCF1,ATAT1,MRPS18B,PPP1R10"
TCGA.AA.A029.01A	6	30557417	30617318	28	-0.2311	NEUTRAL	NA	5	"ABCF1,ATAT1,C6orf136,MRPS18B,PPP1R10"
TCGA.AA.A024.01A	6	30558274	31930176	435	0.0892	NEUTRAL	NA	72	"ABCF1,ABHD16A,AIF1,APOM,ATAT1,ATP6V1G2,BAG6,C2,C6orf136,C6orf15,C6orf25,C6orf47,C6orf48,CCHCR1,CDSN,CFB,CLIC1,CSNK2B,DDAH2,DDR1,DDX39B,DHX16,DPCR1,EHMT2,FLOT1,GPANK1,GTF2H4,HLA-B,HLA-C,HSPA1A,HSPA1B,HSPA1L,IER3,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MDC1,MICA,MICB,MRPS18B,MSH5,MUC21,MUC22,NCR3,NELFE,NEU1,NFKBIL1,NRM,POU5F1,PPP1R10,PPP1R18,PRRC2A,PSORS1C1,PSORS1C2,SAPCD1,SFTA2,SKIV2L,SLC44A4,TCF19,TNF,TUBB,VARS,VARS2,VWA7,ZBTB12"
TCGA.AA.A01Q.01A	6	30570938	30680000	55	-0.2628	NEUTRAL	NA	8	"ATAT1,C6orf136,DHX16,MDC1,MRPS18B,NRM,PPP1R10,PPP1R18"
TCGA.AA.3939.01A	6	30627241	170892551	7691	-0.2415	NEUTRAL	NA	767	Too-Many
TCGA.EI.6883	6	30627866	31941556	577	0.0182	NEUTRAL	NA	69	"ABHD16A,AIF1,APOM,ATP6V1G2,BAG6,C2,C6orf15,C6orf25,C6orf47,C6orf48,CCHCR1,CDSN,CFB,CLIC1,CSNK2B,DDAH2,DDR1,DDX39B,DHX16,DPCR1,DXO,EHMT2,FLOT1,GPANK1,GTF2H4,HLA-B,HLA-C,HSPA1A,HSPA1B,HSPA1L,IER3,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MDC1,MICA,MICB,MSH5,MUC21,MUC22,NCR3,NELFE,NEU1,NFKBIL1,NRM,POU5F1,PPP1R18,PRRC2A,PSORS1C1,PSORS1C2,SAPCD1,SFTA2,SKIV2L,SLC44A4,STK19,TCF19,TNF,TUBB,VARS,VARS2,VWA7,ZBTB12"
TCGA.AA.A029.01A	6	30630367	31921785	366	-0.4114	NEUTRAL	NA	66	"ABHD16A,AIF1,APOM,ATP6V1G2,BAG6,C2,C6orf15,C6orf25,C6orf47,C6orf48,CCHCR1,CDSN,CFB,CLIC1,CSNK2B,DDAH2,DDR1,DDX39B,DHX16,DPCR1,EHMT2,FLOT1,GPANK1,GTF2H4,HLA-B,HLA-C,HSPA1A,HSPA1B,HSPA1L,IER3,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MDC1,MICA,MICB,MSH5,MUC21,MUC22,NCR3,NELFE,NEU1,NFKBIL1,NRM,POU5F1,PPP1R18,PRRC2A,PSORS1C1,PSORS1C2,SAPCD1,SFTA2,SLC44A4,TCF19,TNF,TUBB,VARS,VARS2,VWA7,ZBTB12"
TCGA.AG.3891.01A	6	30630641	30688211	26	0.2132	NEUTRAL	NA	5	"DHX16,MDC1,NRM,PPP1R18,TUBB"
TCGA.AA.A010.01A	6	30668193	30711695	24	-0.1906	NEUTRAL	NA	4	"FLOT1,IER3,MDC1,TUBB"
TCGA.AG.4009.01A	6	30671390	30890913	60	-0.428	NEUTRAL	NA	7	"DDR1,FLOT1,GTF2H4,IER3,MDC1,TUBB,VARS2"
TCGA.CM.5341	6	30684685	36492374	1901	0.3695	NEUTRAL	NA	166	Too-Many
TCGA.AA.A01Q.01A	6	30690272	30866614	26	-0.1479	NEUTRAL	NA	4	"DDR1,FLOT1,IER3,TUBB"
TCGA.AG.3891.01A	6	30691076	31324518	102	0.1748	NEUTRAL	NA	19	"C6orf15,CCHCR1,CDSN,DDR1,DPCR1,FLOT1,GTF2H4,HLA-B,HLA-C,IER3,MUC21,MUC22,POU5F1,PSORS1C1,PSORS1C2,SFTA2,TCF19,TUBB,VARS2"
TCGA.AG.A01L.01A	6	30698153	30711695	7	-0.352	NEUTRAL	NA	2	"FLOT1,IER3"
TCGA.AA.A00N.01A	6	30711695	30866614	15	-0.1683	NEUTRAL	NA	2	"DDR1,IER3"
TCGA.AG.3575	6	30791408	53507365	7443	0.0059	NEUTRAL	NA	324	Too-Many
TCGA.AG.A01L.01A	6	30856462	31498123	107	0.0456	NEUTRAL	NA	20	"C6orf15,CCHCR1,CDSN,DDR1,DDX39B,DPCR1,GTF2H4,HLA-B,HLA-C,MCCD1,MICA,MICB,MUC21,MUC22,POU5F1,PSORS1C1,PSORS1C2,SFTA2,TCF19,VARS2"
TCGA.AG.3906.01A	6	30864356	30866614	5	0.3192	NEUTRAL	NA	1	DDR1
TCGA.AA.A010.01A	6	30876782	30887834	18	-0.3793	NEUTRAL	NA	2	"GTF2H4,VARS2"
TCGA.AG.3906.01A	6	30876782	31137955	70	-0.0604	NEUTRAL	NA	13	"C6orf15,CCHCR1,CDSN,DPCR1,GTF2H4,MUC21,MUC22,POU5F1,PSORS1C1,PSORS1C2,SFTA2,TCF19,VARS2"
TCGA.AG.3909.01A	6	30885420	30899777	16	0.2386	NEUTRAL	NA	2	"SFTA2,VARS2"
TCGA.AA.A010.01A	6	30888394	30953962	22	0.2053	NEUTRAL	NA	4	"DPCR1,MUC21,SFTA2,VARS2"
TCGA.AA.A00N.01A	6	30889921	30908718	9	0.3522	NEUTRAL	NA	2	"SFTA2,VARS2"
TCGA.AG.4009.01A	6	30892079	31084530	19	0.115	NEUTRAL	NA	8	"C6orf15,CDSN,DPCR1,MUC21,MUC22,PSORS1C1,SFTA2,VARS2"
TCGA.AG.A016.01A	6	30892999	31371343	54	0.028	NEUTRAL	NA	15	"C6orf15,CCHCR1,CDSN,DPCR1,HLA-B,HLA-C,MICA,MUC21,MUC22,POU5F1,PSORS1C1,PSORS1C2,SFTA2,TCF19,VARS2"
TCGA.AG.A015.01A	6	30899777	31544936	85	0.0937	NEUTRAL	NA	21	"ATP6V1G2,C6orf15,CCHCR1,CDSN,DDX39B,DPCR1,HLA-B,HLA-C,LTA,MCCD1,MICA,MICB,MUC21,MUC22,NFKBIL1,POU5F1,PSORS1C1,PSORS1C2,SFTA2,TCF19,TNF"
TCGA.AA.A01Q.01A	6	30908718	30953962	7	-0.4275	NEUTRAL	NA	2	"DPCR1,MUC21"
TCGA.AA.A01Q.01A	6	30954562	31543518	64	-0.0428	NEUTRAL	NA	19	"ATP6V1G2,C6orf15,CCHCR1,CDSN,DDX39B,HLA-B,HLA-C,LTA,MCCD1,MICA,MICB,MUC21,MUC22,NFKBIL1,POU5F1,PSORS1C1,PSORS1C2,TCF19,TNF"
TCGA.AG.A00C.01A	6	31079119	31500515	55	-0.0126	NEUTRAL	NA	13	"C6orf15,CCHCR1,CDSN,DDX39B,HLA-B,HLA-C,MCCD1,MICA,MICB,POU5F1,PSORS1C1,PSORS1C2,TCF19"
TCGA.AA.A00D.01A	6	31080198	31118192	17	-0.4672	NEUTRAL	NA	5	"C6orf15,CCHCR1,CDSN,PSORS1C1,PSORS1C2"
TCGA.AG.3909.01A	6	31097338	31465904	41	-0.1225	NEUTRAL	NA	9	"CCHCR1,HLA-B,HLA-C,MICA,MICB,POU5F1,PSORS1C1,PSORS1C2,TCF19"
TCGA.CK.5914.01A	6	31097338	31497477	48	0.1062	NEUTRAL	NA	10	"CCHCR1,HLA-B,HLA-C,MCCD1,MICA,MICB,POU5F1,PSORS1C1,PSORS1C2,TCF19"
TCGA.AG.A02X.01A	6	31112434	31921454	273	-0.1207	NEUTRAL	NA	48	"ABHD16A,AIF1,APOM,ATP6V1G2,BAG6,C2,C6orf25,C6orf47,C6orf48,CCHCR1,CFB,CLIC1,CSNK2B,DDAH2,DDX39B,EHMT2,GPANK1,HLA-B,HLA-C,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MICA,MICB,MSH5,NCR3,NELFE,NEU1,NFKBIL1,POU5F1,PRRC2A,SAPCD1,SLC44A4,TCF19,TNF,VARS,VWA7,ZBTB12"
TCGA.AA.A00N.01A	6	31117804	31497477	37	-0.1073	NEUTRAL	NA	8	"CCHCR1,HLA-B,HLA-C,MCCD1,MICA,MICB,POU5F1,TCF19"
TCGA.AA.A00D.01A	6	31122226	35473516	852	-0.0843	NEUTRAL	NA	134	Too-Many
TCGA.AG.4009.01A	6	31124479	31382761	23	0.1896	NEUTRAL	NA	6	"CCHCR1,HLA-B,HLA-C,MICA,POU5F1,TCF19"
TCGA.AA.3930.01A	6	31236847	31430927	15	-0.159	NEUTRAL	NA	3	"HLA-B,HLA-C,MICA"
TCGA.AA.3850	6	31265538	31266521	9	-0.48755	NEUTRAL	NA	0	None
TCGA.AA.3850	6	31269128	31412999	87	0.25735	NEUTRAL	NA	2	"HLA-B,MICA"
TCGA.CI.6620	6	31317346	170918030	42317	0.0111	NEUTRAL	NA	745	Too-Many
TCGA.G4.6299	6	31334476	46466154	4971	-0.0721	NEUTRAL	NA	260	Too-Many
TCGA.AA.3831	6	31340806	170918030	42335	-0.0001	NEUTRAL	NA	744	Too-Many
TCGA.AG.3891.01A	6	31378323	31497477	14	-0.1219	NEUTRAL	NA	3	"MCCD1,MICA,MICB"
TCGA.AG.3906.01A	6	31378800	31508870	22	-0.0766	NEUTRAL	NA	4	"DDX39B,MCCD1,MICA,MICB"
TCGA.AA.3982	6	31412960	31418123	8	-0.5017	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	6	31430927	31431599	3	-0.5069	NEUTRAL	NA	0	None
TCGA.CM.6680	6	31455833	52625774	6732	0.0087	NEUTRAL	NA	298	Too-Many
TCGA.AG.4009.01A	6	31465904	31560406	38	0.3653	NEUTRAL	NA	10	"ATP6V1G2,DDX39B,LST1,LTA,LTB,MCCD1,MICB,NCR3,NFKBIL1,TNF"
TCGA.AG.3909.01A	6	31473352	31498123	7	-0.4604	NEUTRAL	NA	3	"DDX39B,MCCD1,MICB"
TCGA.AG.A016.01A	6	31477521	31508870	12	0.021	NEUTRAL	NA	3	"DDX39B,MCCD1,MICB"
TCGA.AA.A00Q.01A	6	31496740	32006824	269	-0.3053	NEUTRAL	NA	49	"ABHD16A,AIF1,APOM,ATP6V1G2,BAG6,C2,C4A,C4B,C4B_2,C6orf25,C6orf47,C6orf48,CFB,CLIC1,CSNK2B,CYP21A2,DDAH2,DDX39B,DXO,EHMT2,GPANK1,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MSH5,NCR3,NELFE,NEU1,NFKBIL1,PRRC2A,SAPCD1,SKIV2L,SLC44A4,STK19,TNF,TNXB,VARS,VWA7,ZBTB12"
TCGA.AG.3891.01A	6	31498123	31795691	177	0.3002	NEUTRAL	NA	32	"ABHD16A,AIF1,APOM,ATP6V1G2,BAG6,C6orf25,C6orf47,CLIC1,CSNK2B,DDAH2,DDX39B,GPANK1,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,NCR3,NFKBIL1,PRRC2A,SAPCD1,TNF,VARS,VWA7"
TCGA.CK.5914.01A	6	31498123	32012116	298	-0.3367	NEUTRAL	NA	48	"ABHD16A,AIF1,APOM,ATP6V1G2,BAG6,C2,C4A,C4B,C4B_2,C6orf25,C6orf47,C6orf48,CFB,CLIC1,CSNK2B,CYP21A2,DDAH2,DDX39B,DXO,EHMT2,GPANK1,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,NCR3,NELFE,NEU1,NFKBIL1,PRRC2A,SAPCD1,SKIV2L,SLC44A4,STK19,TNF,TNXB,VARS,VWA7,ZBTB12"
TCGA.AG.A01L.01A	6	31498555	31515923	13	-0.3824	NEUTRAL	NA	3	"ATP6V1G2,DDX39B,NFKBIL1"
TCGA.AG.3906.01A	6	31513135	31795691	170	0.1672	NEUTRAL	NA	31	"ABHD16A,AIF1,APOM,ATP6V1G2,BAG6,C6orf25,C6orf47,CLIC1,CSNK2B,DDAH2,GPANK1,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,NCR3,NFKBIL1,PRRC2A,SAPCD1,TNF,VARS,VWA7"
TCGA.AG.3909.01A	6	31515923	31544466	7	-0.5042	NEUTRAL	NA	3	"LTA,NFKBIL1,TNF"
TCGA.AG.A016.01A	6	31525373	31548489	8	0.1032	NEUTRAL	NA	4	"LTA,LTB,NFKBIL1,TNF"
TCGA.AG.A01L.01A	6	31525373	31616926	51	-0.0349	NEUTRAL	NA	9	"AIF1,BAG6,LST1,LTA,LTB,NCR3,NFKBIL1,PRRC2A,TNF"
TCGA.AG.3909.01A	6	31544936	31583006	12	-0.0814	NEUTRAL	NA	5	"AIF1,LST1,LTB,NCR3,TNF"
TCGA.AG.A015.01A	6	31583006	31591467	4	-0.2736	NEUTRAL	NA	2	"AIF1,PRRC2A"
TCGA.AG.4009.01A	6	31583006	31598346	12	-0.1943	NEUTRAL	NA	2	"AIF1,PRRC2A"
TCGA.AG.A016.01A	6	31583006	31708902	91	0.1891	NEUTRAL	NA	17	"ABHD16A,AIF1,APOM,BAG6,C6orf25,C6orf47,CLIC1,CSNK2B,DDAH2,GPANK1,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,PRRC2A"
TCGA.AG.A015.01A	6	31591998	31609576	21	0.3562	NEUTRAL	NA	2	"BAG6,PRRC2A"
TCGA.AA.A02E.01A	6	31594497	34506004	686	-0.0649	NEUTRAL	NA	103	Too-Many
TCGA.AA.A00N.01A	6	31595521	31615326	24	-0.0805	NEUTRAL	NA	2	"BAG6,PRRC2A"
TCGA.AG.4009.01A	6	31598984	31740740	107	0.2677	NEUTRAL	NA	18	"ABHD16A,APOM,BAG6,C6orf25,C6orf47,CLIC1,CSNK2B,DDAH2,GPANK1,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,PRRC2A,SAPCD1,VWA7"
TCGA.AG.A01W.01A	6	31606772	31843352	73	-0.3976	NEUTRAL	NA	25	"ABHD16A,APOM,BAG6,C6orf25,C6orf47,C6orf48,CLIC1,CSNK2B,DDAH2,GPANK1,HSPA1A,HSPA1B,HSPA1L,LSM2,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,NEU1,SAPCD1,SLC44A4,VARS,VWA7"
TCGA.AA.3967.01A	6	31609576	39545805	1285	-0.1156	NEUTRAL	NA	159	Too-Many
TCGA.AG.A015.01A	6	31610568	31647982	31	0.0028	NEUTRAL	NA	7	"APOM,BAG6,C6orf47,CSNK2B,GPANK1,LY6G5B,LY6G5C"
TCGA.AG.A01L.01A	6	31619381	31656445	24	-0.2672	NEUTRAL	NA	8	"ABHD16A,APOM,BAG6,C6orf47,CSNK2B,GPANK1,LY6G5B,LY6G5C"
TCGA.AA.A01D.01A	6	31619381	170878648	6708	-0.2624	NEUTRAL	NA	730	Too-Many
TCGA.AG.3909.01A	6	31637104	31646827	7	-0.2501	NEUTRAL	NA	3	"CSNK2B,LY6G5B,LY6G5C"
TCGA.AA.A00L.01A	6	31644686	31680269	22	0.322	NEUTRAL	NA	3	"ABHD16A,LY6G5C,LY6G6F"
TCGA.AG.A00C.01A	6	31646827	31759350	82	0.0659	NEUTRAL	NA	12	"ABHD16A,C6orf25,CLIC1,DDAH2,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,SAPCD1,VARS,VWA7"
TCGA.AG.3909.01A	6	31647982	31683084	23	0.3013	NEUTRAL	NA	3	"ABHD16A,LY6G5C,LY6G6F"
TCGA.AA.A00N.01A	6	31650810	31698568	36	0.2394	NEUTRAL	NA	7	"ABHD16A,C6orf25,CLIC1,DDAH2,LY6G6C,LY6G6D,LY6G6F"
TCGA.AG.A015.01A	6	31654929	31699943	31	0.3685	NEUTRAL	NA	7	"ABHD16A,C6orf25,CLIC1,DDAH2,LY6G6C,LY6G6D,LY6G6F"
TCGA.AG.A01L.01A	6	31660755	31701902	26	0.0016	NEUTRAL	NA	7	"ABHD16A,C6orf25,CLIC1,DDAH2,LY6G6C,LY6G6D,LY6G6F"
TCGA.AA.A00L.01A	6	31683084	31856739	105	-0.0061	NEUTRAL	NA	17	"C6orf25,C6orf48,CLIC1,DDAH2,EHMT2,HSPA1A,HSPA1B,HSPA1L,LSM2,LY6G6C,LY6G6D,MSH5,NEU1,SAPCD1,SLC44A4,VARS,VWA7"
TCGA.AG.3909.01A	6	31685185	31691447	6	-0.2133	NEUTRAL	NA	3	"C6orf25,LY6G6C,LY6G6D"
TCGA.AA.A02K.01A	6	31685379	31701592	7	-0.3754	NEUTRAL	NA	5	"C6orf25,CLIC1,DDAH2,LY6G6C,LY6G6D"
TCGA.AG.A015.01A	6	31701296	31740740	32	0.0387	NEUTRAL	NA	4	"CLIC1,MSH5,SAPCD1,VWA7"
TCGA.AA.A02K.01A	6	31701885	33648069	339	0.0245	NEUTRAL	NA	77	"AGER,AGPAT1,ATF6B,B3GALT4,BAK1,BRD2,BTNL2,C2,C4A,C4B,C4B_2,C6orf10,C6orf48,CFB,CLIC1,COL11A2,CUTA,CYP21A2,DAXX,DXO,EGFL8,EHMT2,FKBPL,GPSM3,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,HSD17B8,HSPA1A,HSPA1B,HSPA1L,ITPR3,KIFC1,LSM2,MSH5,NELFE,NEU1,NOTCH4,PBX2,PFDN6,PHF1,PPT2,PRRT1,PSMB8,PSMB9,RGL2,RING1,RNF5,RPS18,RXRB,SAPCD1,SKIV2L,SLC39A7,SLC44A4,STK19,SYNGAP1,TAP1,TAP2,TAPBP,TNXB,VARS,VPS52,VWA7,WDR46,ZBTB12,ZBTB22,ZBTB9"
TCGA.AA.A010.01A	6	31708902	31749853	41	-0.0783	NEUTRAL	NA	4	"MSH5,SAPCD1,VARS,VWA7"
TCGA.AG.A016.01A	6	31710638	31737405	26	-0.228	NEUTRAL	NA	3	"MSH5,SAPCD1,VWA7"
TCGA.AG.3909.01A	6	31712958	31746713	30	-0.0496	NEUTRAL	NA	4	"MSH5,SAPCD1,VARS,VWA7"
TCGA.AG.A01L.01A	6	31715090	31740740	24	-0.1137	NEUTRAL	NA	3	"MSH5,SAPCD1,VWA7"
TCGA.AA.A00N.01A	6	31721061	31730150	12	-0.4667	NEUTRAL	NA	1	MSH5
TCGA.AA.A00N.01A	6	31730793	31740740	12	0.0895	NEUTRAL	NA	2	"SAPCD1,VWA7"
TCGA.AA.3930.01A	6	31731161	72086597	2909	0.317	NEUTRAL	NA	313	Too-Many
TCGA.A6.3808.01A	6	31733324	31948187	125	-0.4196	NEUTRAL	NA	17	"C2,C6orf48,CFB,DXO,EHMT2,HSPA1A,HSPA1B,HSPA1L,LSM2,NELFE,NEU1,SKIV2L,SLC44A4,STK19,VARS,VWA7,ZBTB12"
TCGA.AG.A016.01A	6	31737731	31743060	4	0.1997	NEUTRAL	NA	1	VWA7
TCGA.AG.4009.01A	6	31742261	31752966	13	-0.2496	NEUTRAL	NA	2	"VARS,VWA7"
TCGA.AF.3914.01A	6	31751947	31906975	60	-0.4697	NEUTRAL	NA	11	"C2,C6orf48,EHMT2,HSPA1A,HSPA1B,HSPA1L,LSM2,NEU1,SLC44A4,VARS,ZBTB12"
TCGA.AG.A015.01A	6	31753305	33648059	517	0.162	NEUTRAL	NA	73	"AGER,AGPAT1,ATF6B,B3GALT4,BAK1,BRD2,BTNL2,C2,C4A,C4B,C4B_2,C6orf10,C6orf48,CFB,COL11A2,CUTA,CYP21A2,DAXX,DXO,EGFL8,EHMT2,FKBPL,GPSM3,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,HSD17B8,HSPA1A,HSPA1B,HSPA1L,ITPR3,KIFC1,LSM2,NELFE,NEU1,NOTCH4,PBX2,PFDN6,PHF1,PPT2,PRRT1,PSMB8,PSMB9,RGL2,RING1,RNF5,RPS18,RXRB,SKIV2L,SLC39A7,SLC44A4,STK19,SYNGAP1,TAP1,TAP2,TAPBP,TNXB,VARS,VPS52,WDR46,ZBTB12,ZBTB22,ZBTB9"
TCGA.AA.A01F.01A	6	31766179	36993531	855	0.0854	NEUTRAL	NA	124	Too-Many
TCGA.AG.A01L.01A	6	31773784	31852161	32	0.0632	NEUTRAL	NA	8	"C6orf48,EHMT2,HSPA1A,HSPA1B,HSPA1L,LSM2,NEU1,SLC44A4"
TCGA.AG.A016.01A	6	31777783	31844734	22	0.0346	NEUTRAL	NA	6	"C6orf48,HSPA1A,HSPA1B,HSPA1L,NEU1,SLC44A4"
TCGA.AG.4009.01A	6	31777783	31851076	29	-0.4772	NEUTRAL	NA	7	"C6orf48,EHMT2,HSPA1A,HSPA1B,HSPA1L,NEU1,SLC44A4"
TCGA.EI.7004	6	31827285	170918030	42100	-0.0088	NEUTRAL	NA	708	Too-Many
TCGA.AG.3909.01A	6	31827489	31856739	28	-0.2562	NEUTRAL	NA	3	"EHMT2,NEU1,SLC44A4"
TCGA.AA.A00N.01A	6	31827489	31901360	36	-0.3595	NEUTRAL	NA	5	"C2,EHMT2,NEU1,SLC44A4,ZBTB12"
TCGA.AG.A023.01A	6	31830343	64421465	2452	-0.0672	NEUTRAL	NA	294	Too-Many
TCGA.AG.A00C.01A	6	31831353	31856978	24	-0.0213	NEUTRAL	NA	2	"EHMT2,SLC44A4"
TCGA.AG.3891.01A	6	31832385	32339386	221	0.2707	NEUTRAL	NA	26	"AGER,AGPAT1,ATF6B,C2,C4A,C4B,C4B_2,C6orf10,CFB,CYP21A2,DXO,EGFL8,EHMT2,FKBPL,GPSM3,NELFE,NOTCH4,PBX2,PPT2,PRRT1,RNF5,SKIV2L,SLC44A4,STK19,TNXB,ZBTB12"
TCGA.AA.A00O.01A	6	31833032	35610445	687	-0.161	NEUTRAL	NA	93	"AGER,AGPAT1,ANKS1A,ATF6B,B3GALT4,BAK1,BRD2,BTNL2,C2,C4A,C4B,C4B_2,C6orf1,C6orf10,C6orf106,CFB,COL11A2,CUTA,CYP21A2,DAXX,DEF6,DXO,EGFL8,EHMT2,FANCE,FKBP5,FKBPL,GPSM3,GRM4,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,HMGA1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,MLN,NELFE,NOTCH4,NUDT3,PACSIN1,PBX2,PFDN6,PHF1,PPARD,PPT2,PRRT1,PSMB8,PSMB9,RGL2,RING1,RNF5,RPL10A,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SKIV2L,SLC39A7,SLC44A4,SNRPC,SPDEF,STK19,SYNGAP1,TAF11,TAP1,TAP2,TAPBP,TCP11,TEAD3,TNXB,TULP1,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB12,ZBTB22,ZBTB9,ZNF76"
TCGA.F5.6464	6	31836826	33089195	537	-0.4225	NEUTRAL	NA	45	"AGER,AGPAT1,ATF6B,BRD2,BTNL2,C2,C4A,C4B,C4B_2,C6orf10,CFB,CYP21A2,DXO,EGFL8,EHMT2,FKBPL,GPSM3,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,NELFE,NOTCH4,PBX2,PPT2,PRRT1,PSMB8,PSMB9,RNF5,SKIV2L,SLC44A4,STK19,TAP1,TAP2,TNXB,ZBTB12"
TCGA.AG.A01W.01A	6	31848982	31868462	9	0.3186	NEUTRAL	NA	3	"C2,EHMT2,ZBTB12"
TCGA.AG.A00C.01A	6	31860157	31996675	61	0.3754	NEUTRAL	NA	13	"C2,C4A,C4B,C4B_2,CFB,CYP21A2,DXO,EHMT2,NELFE,SKIV2L,STK19,TNXB,ZBTB12"
TCGA.AA.A00L.01A	6	31903653	32260751	128	-0.0696	NEUTRAL	NA	23	"AGER,AGPAT1,ATF6B,C2,C4A,C4B,C4B_2,C6orf10,CFB,CYP21A2,DXO,EGFL8,FKBPL,GPSM3,NELFE,NOTCH4,PBX2,PPT2,PRRT1,RNF5,SKIV2L,STK19,TNXB"
TCGA.AG.A01L.01A	6	31906975	32146237	117	0.0584	NEUTRAL	NA	18	"AGPAT1,ATF6B,C2,C4A,C4B,C4B_2,CFB,CYP21A2,DXO,EGFL8,FKBPL,NELFE,PPT2,PRRT1,RNF5,SKIV2L,STK19,TNXB"
TCGA.AF.3914.01A	6	31910686	31931677	30	-0.0234	NEUTRAL	NA	4	"C2,CFB,NELFE,SKIV2L"
TCGA.AG.A016.01A	6	31910686	32796623	228	0.1283	NEUTRAL	NA	33	"AGER,AGPAT1,ATF6B,BTNL2,C2,C4A,C4B,C4B_2,C6orf10,CFB,CYP21A2,DXO,EGFL8,FKBPL,GPSM3,HLA-DOB,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,NELFE,NOTCH4,PBX2,PPT2,PRRT1,RNF5,SKIV2L,STK19,TAP2,TNXB"
TCGA.AG.3906.01A	6	31921454	31948187	30	0.22	NEUTRAL	NA	4	"DXO,NELFE,SKIV2L,STK19"
TCGA.AA.A010.01A	6	31922315	32009094	44	-0.3872	NEUTRAL	NA	9	"C4A,C4B,C4B_2,CYP21A2,DXO,NELFE,SKIV2L,STK19,TNXB"
TCGA.AG.A02X.01A	6	31922778	32006824	37	-0.2135	NEUTRAL	NA	9	"C4A,C4B,C4B_2,CYP21A2,DXO,NELFE,SKIV2L,STK19,TNXB"
TCGA.AA.A029.01A	6	31926890	44390342	1630	-0.3476	NEUTRAL	NA	211	Too-Many
TCGA.AA.A024.01A	6	31933580	33162409	304	0.0452	NEUTRAL	NA	41	"AGER,AGPAT1,ATF6B,BRD2,BTNL2,C4A,C4B,C4B_2,C6orf10,COL11A2,CYP21A2,DXO,EGFL8,FKBPL,GPSM3,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,NOTCH4,PBX2,PPT2,PRRT1,PSMB8,PSMB9,RNF5,RXRB,SKIV2L,STK19,TAP1,TAP2,TNXB"
TCGA.AG.A01W.01A	6	31954616	32009891	14	0.2733	NEUTRAL	NA	6	"C4A,C4B,C4B_2,CYP21A2,STK19,TNXB"
TCGA.AG.3906.01A	6	31961970	32041393	34	-0.0776	NEUTRAL	NA	6	"C4A,C4B,C4B_2,CYP21A2,STK19,TNXB"
TCGA.AG.4009.01A	6	31961970	32049118	37	0.173	NEUTRAL	NA	6	"C4A,C4B,C4B_2,CYP21A2,STK19,TNXB"
TCGA.AZ.4684.01A	6	31994741	32557370	164	0.1282	NEUTRAL	NA	20	"AGER,AGPAT1,ATF6B,BTNL2,C4B,C4B_2,C6orf10,CYP21A2,EGFL8,FKBPL,GPSM3,HLA-DRA,HLA-DRB1,HLA-DRB5,NOTCH4,PBX2,PPT2,PRRT1,RNF5,TNXB"
TCGA.AA.3509.01A	6	31996675	32411481	152	0.0316	NEUTRAL	NA	18	"AGER,AGPAT1,ATF6B,BTNL2,C4B,C4B_2,C6orf10,CYP21A2,EGFL8,FKBPL,GPSM3,HLA-DRA,NOTCH4,PBX2,PPT2,PRRT1,RNF5,TNXB"
TCGA.AG.A00C.01A	6	31997312	32037912	24	-0.0125	NEUTRAL	NA	4	"C4B,C4B_2,CYP21A2,TNXB"
TCGA.AA.3815.01A	6	32006824	41039258	1166	0.0319	NEUTRAL	NA	130	Too-Many
TCGA.AG.A02X.01A	6	32008193	32039746	22	0.356	NEUTRAL	NA	2	"CYP21A2,TNXB"
TCGA.AA.A010.01A	6	32009498	32083478	37	0.0748	NEUTRAL	NA	2	"ATF6B,TNXB"
TCGA.AA.A00Q.01A	6	32010044	32096456	21	0.1093	NEUTRAL	NA	2	"ATF6B,TNXB"
TCGA.DM.A28M.01A	6	32011494	65097334	2594	0.2135	NEUTRAL	NA	281	Too-Many
TCGA.CK.5914.01A	6	32012766	32088516	40	0.1324	NEUTRAL	NA	2	"ATF6B,TNXB"
TCGA.A6.3808.01A	6	32013922	32041393	20	-0.1768	NEUTRAL	NA	1	TNXB
TCGA.AA.A01Q.01A	6	32015494	32095853	26	-0.0534	NEUTRAL	NA	2	"ATF6B,TNXB"
TCGA.AA.A00N.01A	6	32016113	32037912	16	0.0437	NEUTRAL	NA	1	TNXB
TCGA.AG.A01W.01A	6	32023695	32081513	21	-0.32	NEUTRAL	NA	1	TNXB
TCGA.AA.3870	6	32033006	35863885	1181	-0.4847	NEUTRAL	NA	86	"AGER,AGPAT1,ANKS1A,ARMC12,ATF6B,B3GALT4,BAK1,BRD2,BTNL2,C6orf1,C6orf10,C6orf106,CLPS,CLPSL1,CLPSL2,COL11A2,CUTA,DAXX,DEF6,EGFL8,FANCE,FKBP5,FKBPL,GPSM3,GRM4,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,HMGA1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,LHFPL5,MLN,NOTCH4,NUDT3,PACSIN1,PBX2,PFDN6,PHF1,PPARD,PPT2,PRRT1,PSMB8,PSMB9,RGL2,RING1,RNF5,RPL10A,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SLC39A7,SNRPC,SPDEF,SRPK1,SYNGAP1,TAF11,TAP1,TAP2,TAPBP,TCP11,TEAD3,TNXB,TULP1,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9,ZNF76"
TCGA.AF.3914.01A	6	32039746	32057023	9	-0.4509	NEUTRAL	NA	1	TNXB
TCGA.AG.A02X.01A	6	32041393	32166183	62	-0.1293	NEUTRAL	NA	12	"AGER,AGPAT1,ATF6B,EGFL8,FKBPL,GPSM3,NOTCH4,PBX2,PPT2,PRRT1,RNF5,TNXB"
TCGA.AF.3914.01A	6	32063380	32095853	16	0.2333	NEUTRAL	NA	2	"ATF6B,TNXB"
TCGA.AG.A01W.01A	6	32082119	32173515	26	0.1155	NEUTRAL	NA	11	"AGER,AGPAT1,ATF6B,EGFL8,FKBPL,GPSM3,NOTCH4,PBX2,PPT2,PRRT1,RNF5"
TCGA.AG.4009.01A	6	32083478	32096456	15	-0.2875	NEUTRAL	NA	1	ATF6B
TCGA.AG.3909.01A	6	32083478	32121312	19	-0.0323	NEUTRAL	NA	4	"ATF6B,FKBPL,PPT2,PRRT1"
TCGA.AA.A010.01A	6	32084201	32122322	19	-0.4711	NEUTRAL	NA	4	"ATF6B,FKBPL,PPT2,PRRT1"
TCGA.CK.5914.01A	6	32089056	32166183	46	-0.1893	NEUTRAL	NA	11	"AGER,AGPAT1,ATF6B,EGFL8,FKBPL,GPSM3,NOTCH4,PBX2,PPT2,PRRT1,RNF5"
TCGA.AF.3914.01A	6	32096456	32133864	12	-0.4247	NEUTRAL	NA	4	"EGFL8,FKBPL,PPT2,PRRT1"
TCGA.AA.A01Q.01A	6	32096456	32171876	45	-0.4811	NEUTRAL	NA	10	"AGER,AGPAT1,EGFL8,FKBPL,GPSM3,NOTCH4,PBX2,PPT2,PRRT1,RNF5"
TCGA.AA.A01C.01A	6	32116952	32138667	16	-0.068	NEUTRAL	NA	4	"AGPAT1,EGFL8,PPT2,PRRT1"
TCGA.AA.A00Q.01A	6	32116952	32157434	30	-0.34	NEUTRAL	NA	7	"AGER,AGPAT1,EGFL8,PBX2,PPT2,PRRT1,RNF5"
TCGA.AA.A010.01A	6	32132348	32155375	19	-0.2864	NEUTRAL	NA	5	"AGER,AGPAT1,EGFL8,PBX2,RNF5"
TCGA.AG.4009.01A	6	32133864	32156435	20	0.0273	NEUTRAL	NA	5	"AGER,AGPAT1,EGFL8,PBX2,RNF5"
TCGA.AG.A00C.01A	6	32133864	32487116	83	0.0545	NEUTRAL	NA	11	"AGER,AGPAT1,BTNL2,C6orf10,EGFL8,GPSM3,HLA-DRA,HLA-DRB5,NOTCH4,PBX2,RNF5"
TCGA.AF.3914.01A	6	32134228	33154327	214	0.2534	NEUTRAL	NA	28	"AGER,AGPAT1,BRD2,BTNL2,C6orf10,COL11A2,EGFL8,GPSM3,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,NOTCH4,PBX2,PSMB8,PSMB9,RNF5,TAP1,TAP2"
TCGA.AA.A01C.01A	6	32139024	32155726	11	-0.4868	NEUTRAL	NA	4	"AGER,AGPAT1,PBX2,RNF5"
TCGA.AG.3906.01A	6	32148891	33379991	290	-0.1133	NEUTRAL	NA	40	"AGER,B3GALT4,BRD2,BTNL2,C6orf10,COL11A2,DAXX,GPSM3,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,HSD17B8,KIFC1,NOTCH4,PBX2,PFDN6,PHF1,PSMB8,PSMB9,RGL2,RING1,RPS18,RXRB,SLC39A7,TAP1,TAP2,TAPBP,VPS52,WDR46,ZBTB22"
TCGA.AG.A01L.01A	6	32154118	32784587	99	0.0445	NEUTRAL	NA	13	"BTNL2,C6orf10,GPSM3,HLA-DOB,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,NOTCH4,PBX2"
TCGA.AA.A01C.01A	6	32156435	32165099	10	-0.0518	NEUTRAL	NA	3	"GPSM3,NOTCH4,PBX2"
TCGA.AA.A00Q.01A	6	32166694	32260751	21	-0.299	NEUTRAL	NA	2	"C6orf10,NOTCH4"
TCGA.AA.A00N.01A	6	32169856	32180210	5	-0.0018	NEUTRAL	NA	1	NOTCH4
TCGA.AA.A01C.01A	6	32178478	33143314	165	-0.1471	NEUTRAL	NA	22	"BRD2,BTNL2,C6orf10,COL11A2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,NOTCH4,PSMB8,PSMB9,TAP1,TAP2"
TCGA.AA.A01Q.01A	6	32178478	33152703	172	0.324	NEUTRAL	NA	22	"BRD2,BTNL2,C6orf10,COL11A2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,NOTCH4,PSMB8,PSMB9,TAP1,TAP2"
TCGA.AG.A01W.01A	6	32191473	32298715	39	-0.4943	NEUTRAL	NA	2	"C6orf10,NOTCH4"
TCGA.AA.3982	6	32220483	32745526	239	0.2423	NEUTRAL	NA	9	"BTNL2,C6orf10,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5"
TCGA.F4.6854	6	32243128	35362847	1011	0.036	NEUTRAL	NA	63	"ANKS1A,B3GALT4,BAK1,BRD2,BTNL2,C6orf1,C6orf10,C6orf106,COL11A2,CUTA,DAXX,DEF6,GRM4,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,HMGA1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,MLN,NUDT3,PACSIN1,PFDN6,PHF1,PPARD,PSMB8,PSMB9,RGL2,RING1,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SLC39A7,SNRPC,SPDEF,SYNGAP1,TAF11,TAP1,TAP2,TAPBP,TCP11,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9,ZNF76"
TCGA.AG.4009.01A	6	32260751	32605175	42	-0.2391	NEUTRAL	NA	5	"BTNL2,C6orf10,HLA-DRA,HLA-DRB1,HLA-DRB5"
TCGA.AA.A010.01A	6	32260751	32627921	52	0.0326	NEUTRAL	NA	7	"BTNL2,C6orf10,HLA-DQA1,HLA-DQB1,HLA-DRA,HLA-DRB1,HLA-DRB5"
TCGA.CK.5914.01A	6	32267606	32303613	12	0.098	NEUTRAL	NA	1	C6orf10
TCGA.AA.A00A.01A	6	32267606	32322825	15	0.3575	NEUTRAL	NA	1	C6orf10
TCGA.AA.A00L.01A	6	32267606	32322825	16	0.3243	NEUTRAL	NA	1	C6orf10
TCGA.AA.A00Q.01A	6	32267606	32322825	15	0.3406	NEUTRAL	NA	1	C6orf10
TCGA.AA.3850	6	32281509	32686195	171	0.06365	NEUTRAL	NA	7	"BTNL2,C6orf10,HLA-DQA1,HLA-DQB1,HLA-DRA,HLA-DRB1,HLA-DRB5"
TCGA.AG.A02X.01A	6	32284080	32362476	20	0.1231	NEUTRAL	NA	2	"BTNL2,C6orf10"
TCGA.A6.3808.01A	6	32298276	35423515	516	-0.0931	NEUTRAL	NA	64	"ANKS1A,B3GALT4,BAK1,BRD2,BTNL2,C6orf1,C6orf10,C6orf106,COL11A2,CUTA,DAXX,DEF6,FANCE,GRM4,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,HMGA1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,MLN,NUDT3,PACSIN1,PFDN6,PHF1,PPARD,PSMB8,PSMB9,RGL2,RING1,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SLC39A7,SNRPC,SPDEF,SYNGAP1,TAF11,TAP1,TAP2,TAPBP,TCP11,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9,ZNF76"
TCGA.CK.5914.01A	6	32304311	32339386	12	-0.3824	NEUTRAL	NA	1	C6orf10
TCGA.AG.3909.01A	6	32317464	32369447	11	0.0173	NEUTRAL	NA	2	"BTNL2,C6orf10"
TCGA.AA.A00Q.01A	6	32323348	32610339	28	-0.0813	NEUTRAL	NA	6	"BTNL2,C6orf10,HLA-DQA1,HLA-DRA,HLA-DRB1,HLA-DRB5"
TCGA.AA.A00L.01A	6	32323348	42796191	1099	-0.093	NEUTRAL	NA	145	Too-Many
TCGA.AA.A00A.01A	6	32323348	49426798	1627	-0.0864	NEUTRAL	NA	213	Too-Many
TCGA.AG.A01W.01A	6	32339553	33161883	38	0.0418	NEUTRAL	NA	22	"BRD2,BTNL2,C6orf10,COL11A2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,PSMB8,PSMB9,RXRB,TAP1,TAP2"
TCGA.AG.3891.01A	6	32362476	32948312	91	-0.0894	NEUTRAL	NA	16	"BRD2,BTNL2,HLA-DMA,HLA-DMB,HLA-DOB,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,PSMB8,PSMB9,TAP1,TAP2"
TCGA.AA.A00N.01A	6	32485433	32731099	31	-0.234	NEUTRAL	NA	6	"HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRB1,HLA-DRB5"
TCGA.AG.3909.01A	6	32485433	32813315	50	-0.2237	NEUTRAL	NA	10	"HLA-DOB,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRB1,HLA-DRB5,PSMB8,TAP1,TAP2"
TCGA.AG.A02X.01A	6	32485433	33157069	136	0.0566	NEUTRAL	NA	18	"BRD2,COL11A2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRB1,HLA-DRB5,PSMB8,PSMB9,TAP1,TAP2"
TCGA.AG.A00C.01A	6	32489631	32557370	8	-0.4436	NEUTRAL	NA	2	"HLA-DRB1,HLA-DRB5"
TCGA.AG.A00C.01A	6	32605175	32815687	41	-0.0356	NEUTRAL	NA	8	"HLA-DOB,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,PSMB8,TAP1,TAP2"
TCGA.AA.3509.01A	6	32629696	35927198	557	-0.0487	NEUTRAL	NA	69	"ANKS1A,ARMC12,B3GALT4,BAK1,BRD2,C6orf1,C6orf106,CLPS,CLPSL1,CLPSL2,COL11A2,CUTA,DAXX,DEF6,FANCE,FKBP5,GRM4,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HMGA1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,LHFPL5,MLN,NUDT3,PACSIN1,PFDN6,PHF1,PPARD,PSMB8,PSMB9,RGL2,RING1,RPL10A,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SLC26A8,SLC39A7,SNRPC,SPDEF,SRPK1,SYNGAP1,TAF11,TAP1,TAP2,TAPBP,TCP11,TEAD3,TULP1,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9,ZNF76"
TCGA.AA.3850	6	32700683	33079765	250	0.10305	NEUTRAL	NA	13	"BRD2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA2,HLA-DQB2,PSMB8,PSMB9,TAP1,TAP2"
TCGA.AG.4009.01A	6	32709160	32977181	70	-0.0019	NEUTRAL	NA	11	"BRD2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DQA2,HLA-DQB2,PSMB8,PSMB9,TAP1,TAP2"
TCGA.AZ.4684.01A	6	32709160	39563803	953	0.0802	NEUTRAL	NA	103	Too-Many
TCGA.AG.A008.01A	6	32712916	34208511	308	-0.1934	NEUTRAL	NA	40	"B3GALT4,BAK1,BRD2,COL11A2,CUTA,DAXX,GRM4,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA2,HLA-DQB2,HMGA1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,MLN,PFDN6,PHF1,PSMB8,PSMB9,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAP1,TAP2,TAPBP,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AA.3982	6	32759251	32997673	146	0.3671	NEUTRAL	NA	9	"BRD2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,PSMB8,PSMB9,TAP1,TAP2"
TCGA.AA.3844	6	32759251	37813282	1544	0.1917	NEUTRAL	NA	92	"ANKS1A,ARMC12,B3GALT4,BAK1,BRD2,BRPF3,C6orf1,C6orf106,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,COL11A2,CPNE5,CUTA,DAXX,DEF6,ETV7,FANCE,FGD2,FKBP5,GRM4,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HMGA1,HSD17B8,IP6K3,ITPR3,KCTD20,KIFC1,LEMD2,LHFPL5,MAPK13,MAPK14,MDGA1,MLN,MTCH1,NUDT3,PACSIN1,PFDN6,PHF1,PI16,PIM1,PNPLA1,PPARD,PPIL1,PSMB8,PSMB9,PXT1,RAB44,RGL2,RING1,RNF8,RPL10A,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SLC26A8,SLC39A7,SNRPC,SPDEF,SRPK1,SRSF3,STK38,SYNGAP1,TAF11,TAP1,TAP2,TAPBP,TBC1D22B,TCP11,TEAD3,TMEM217,TULP1,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9,ZFAND3,ZNF76"
TCGA.AA.A00Q.01A	6	32782060	34100726	304	-0.3532	NEUTRAL	NA	37	"B3GALT4,BAK1,BRD2,COL11A2,CUTA,DAXX,GRM4,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,MLN,PFDN6,PHF1,PSMB8,PSMB9,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAP1,TAP2,TAPBP,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AG.A01L.01A	6	32789984	32827150	30	-0.2596	NEUTRAL	NA	4	"PSMB8,PSMB9,TAP1,TAP2"
TCGA.AG.A016.01A	6	32797129	32812005	13	-0.3112	NEUTRAL	NA	2	"PSMB8,TAP2"
TCGA.CK.5914.01A	6	32797660	32847140	30	-0.3877	NEUTRAL	NA	4	"PSMB8,PSMB9,TAP1,TAP2"
TCGA.AG.A016.01A	6	32813315	33144440	74	0.1607	NEUTRAL	NA	9	"BRD2,COL11A2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DPA1,HLA-DPB1,PSMB9,TAP1"
TCGA.AG.A00C.01A	6	32816418	32847140	12	0.2843	NEUTRAL	NA	2	"PSMB9,TAP1"
TCGA.AG.A01L.01A	6	32847140	32948312	22	0.1689	NEUTRAL	NA	3	"BRD2,HLA-DMA,HLA-DMB"
TCGA.CK.4948.01B	6	32902671	32918245	9	0.3345	NEUTRAL	NA	2	"HLA-DMA,HLA-DMB"
TCGA.AG.A00C.01A	6	32902671	32920678	10	-0.2353	NEUTRAL	NA	2	"HLA-DMA,HLA-DMB"
TCGA.AA.A00N.01A	6	32902671	32940604	13	0.2868	NEUTRAL	NA	3	"BRD2,HLA-DMA,HLA-DMB"
TCGA.CK.4948.01B	6	32920009	49814206	1852	-0.0759	NEUTRAL	NA	206	Too-Many
TCGA.CK.5914.01A	6	32942197	33053548	23	-0.1264	NEUTRAL	NA	4	"BRD2,HLA-DOA,HLA-DPA1,HLA-DPB1"
TCGA.AD.6965	6	32964966	58432573	7743	0.0539	NEUTRAL	NA	246	Too-Many
TCGA.D5.6929	6	32964966	128320911	26648	0.3159	NEUTRAL	NA	471	Too-Many
TCGA.D5.6930	6	32964966	170918030	41668	0.0061	NEUTRAL	NA	665	Too-Many
TCGA.AA.3982	6	33017485	33125741	84	0.2512	NEUTRAL	NA	2	"HLA-DPA1,HLA-DPB1"
TCGA.AG.3891.01A	6	33036376	33053548	8	-0.1441	NEUTRAL	NA	2	"HLA-DPA1,HLA-DPB1"
TCGA.AG.4009.01A	6	33036376	33053548	8	-0.3987	NEUTRAL	NA	2	"HLA-DPA1,HLA-DPB1"
TCGA.AG.A01L.01A	6	33036376	33140277	25	-0.1304	NEUTRAL	NA	3	"COL11A2,HLA-DPA1,HLA-DPB1"
TCGA.AG.A00C.01A	6	33036376	33543023	156	0.3086	NEUTRAL	NA	22	"B3GALT4,BAK1,COL11A2,CUTA,DAXX,HLA-DPA1,HLA-DPB1,HSD17B8,KIFC1,PFDN6,PHF1,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAPBP,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AA.A010.01A	6	33048189	33143314	25	-0.0044	NEUTRAL	NA	3	"COL11A2,HLA-DPA1,HLA-DPB1"
TCGA.AG.4009.01A	6	33053931	33153415	34	0.2638	NEUTRAL	NA	2	"COL11A2,HLA-DPB1"
TCGA.AG.3891.01A	6	33053931	33373944	122	0.1792	NEUTRAL	NA	16	"B3GALT4,COL11A2,DAXX,HLA-DPB1,HSD17B8,KIFC1,PFDN6,RGL2,RING1,RPS18,RXRB,SLC39A7,TAPBP,VPS52,WDR46,ZBTB22"
TCGA.F5.6464	6	33094868	162424578	38178	0	NEUTRAL	NA	628	Too-Many
TCGA.AA.A00N.01A	6	33131403	33148425	30	-0.1541	NEUTRAL	NA	1	COL11A2
TCGA.CK.5914.01A	6	33131403	33152703	33	0.3494	NEUTRAL	NA	1	COL11A2
TCGA.AG.3909.01A	6	33136245	33153415	26	0.0508	NEUTRAL	NA	1	COL11A2
TCGA.AG.A01L.01A	6	33141125	33148662	14	-0.5011	NEUTRAL	NA	1	COL11A2
TCGA.AG.A016.01A	6	33144726	33154327	11	-0.4985	NEUTRAL	NA	1	COL11A2
TCGA.AG.A01L.01A	6	33151881	170892551	6468	0.1163	NEUTRAL	NA	662	Too-Many
TCGA.CK.5914.01A	6	33153415	33424431	123	-0.3328	NEUTRAL	NA	19	"B3GALT4,COL11A2,CUTA,DAXX,HSD17B8,KIFC1,PFDN6,PHF1,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAPBP,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AA.A01Q.01A	6	33153415	33656968	165	-0.3361	NEUTRAL	NA	21	"B3GALT4,BAK1,COL11A2,CUTA,DAXX,HSD17B8,ITPR3,KIFC1,PFDN6,PHF1,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAPBP,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AG.A016.01A	6	33156089	35442779	334	0.2555	NEUTRAL	NA	46	"ANKS1A,B3GALT4,BAK1,C6orf1,C6orf106,COL11A2,CUTA,DAXX,DEF6,FANCE,GRM4,HMGA1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,MLN,NUDT3,PACSIN1,PFDN6,PHF1,PPARD,RGL2,RING1,RPL10A,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SLC39A7,SNRPC,SPDEF,SYNGAP1,TAF11,TAPBP,TCP11,TEAD3,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9,ZNF76"
TCGA.AA.A01C.01A	6	33162409	33631518	125	-0.3207	NEUTRAL	NA	20	"B3GALT4,BAK1,CUTA,DAXX,HSD17B8,ITPR3,KIFC1,PFDN6,PHF1,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAPBP,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AA.A024.01A	6	33167971	170893340	6578	-0.0075	NEUTRAL	NA	661	Too-Many
TCGA.AA.A010.01A	6	33175564	33234282	14	-0.2119	NEUTRAL	NA	2	"RING1,VPS52"
TCGA.AF.3914.01A	6	33175564	33236779	18	0.242	NEUTRAL	NA	2	"RING1,VPS52"
TCGA.AG.4009.01A	6	33175564	33381484	68	0.0897	NEUTRAL	NA	12	"B3GALT4,DAXX,KIFC1,PFDN6,PHF1,RGL2,RING1,RPS18,TAPBP,VPS52,WDR46,ZBTB22"
TCGA.AG.A02X.01A	6	33176551	33365794	60	-0.0878	NEUTRAL	NA	11	"B3GALT4,DAXX,KIFC1,PFDN6,RGL2,RING1,RPS18,TAPBP,VPS52,WDR46,ZBTB22"
TCGA.AA.A010.01A	6	33234916	33365794	49	0.2745	NEUTRAL	NA	10	"B3GALT4,DAXX,KIFC1,PFDN6,RGL2,RPS18,TAPBP,VPS52,WDR46,ZBTB22"
TCGA.AF.3914.01A	6	33239801	33385685	57	0.2629	NEUTRAL	NA	11	"B3GALT4,CUTA,DAXX,KIFC1,PFDN6,PHF1,RGL2,RPS18,TAPBP,WDR46,ZBTB22"
TCGA.AG.A01W.01A	6	33259884	33697326	111	-0.3236	NEUTRAL	NA	13	"BAK1,CUTA,DAXX,IP6K3,ITPR3,KIFC1,PHF1,RGL2,SYNGAP1,TAPBP,UQCC2,ZBTB22,ZBTB9"
TCGA.AG.4009.01A	6	33381756	33385685	7	-0.3004	NEUTRAL	NA	2	"CUTA,PHF1"
TCGA.AF.3914.01A	6	33406504	33645232	42	0.1667	NEUTRAL	NA	4	"BAK1,ITPR3,SYNGAP1,ZBTB9"
TCGA.AG.4009.01A	6	33408474	33412183	6	-0.26	NEUTRAL	NA	1	SYNGAP1
TCGA.AG.4009.01A	6	33414305	33703043	65	0.2432	NEUTRAL	NA	6	"BAK1,IP6K3,ITPR3,SYNGAP1,UQCC2,ZBTB9"
TCGA.AG.3909.01A	6	33415564	34511758	110	-0.2252	NEUTRAL	NA	16	"BAK1,C6orf1,GRM4,HMGA1,IP6K3,ITPR3,LEMD2,MLN,NUDT3,PACSIN1,RPS10,RPS10-NUDT3,SPDEF,SYNGAP1,UQCC2,ZBTB9"
TCGA.AG.3906.01A	6	33415564	41658394	778	0.0244	NEUTRAL	NA	90	"ANKS1A,APOBEC2,ARMC12,BAK1,BRPF3,BTBD9,C6orf1,C6orf106,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DAAM2,DEF6,DNAH8,ETV7,FANCE,FGD2,FKBP5,FOXP4,GLO1,GLP1R,GRM4,HMGA1,IP6K3,ITPR3,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LEMD2,LHFPL5,LRFN2,MAPK13,MAPK14,MDFI,MDGA1,MLN,MOCS1,MTCH1,NCR2,NFYA,NUDT3,OARD1,PACSIN1,PI16,PIM1,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RNF8,RPL10A,RPS10,RPS10-NUDT3,SAYSD1,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,SRSF3,STK38,SYNGAP1,TAF11,TBC1D22B,TCP11,TEAD3,TFEB,TMEM217,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,TULP1,UHRF1BP1,UNC5CL,UQCC2,ZBTB9,ZFAND3,ZNF76"
TCGA.AA.A010.01A	6	33541528	33560752	6	0.3593	NEUTRAL	NA	1	BAK1
TCGA.CK.5914.01A	6	33541528	34511758	116	-0.0261	NEUTRAL	NA	14	"BAK1,C6orf1,GRM4,HMGA1,IP6K3,ITPR3,LEMD2,MLN,NUDT3,PACSIN1,RPS10,RPS10-NUDT3,SPDEF,UQCC2"
TCGA.AG.A02X.01A	6	33541528	37438779	469	0.1482	NEUTRAL	NA	59	"ANKS1A,ARMC12,BAK1,BRPF3,C6orf1,C6orf106,C6orf222,C6orf89,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DEF6,ETV7,FANCE,FGD2,FKBP5,GRM4,HMGA1,IP6K3,ITPR3,KCTD20,LEMD2,LHFPL5,MAPK13,MAPK14,MLN,MTCH1,NUDT3,PACSIN1,PI16,PIM1,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RNF8,RPL10A,RPS10,RPS10-NUDT3,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,SRSF3,STK38,TAF11,TBC1D22B,TCP11,TEAD3,TMEM217,TULP1,UHRF1BP1,UQCC2,ZNF76"
TCGA.AG.A00H.01A	6	33543023	44199053	1220	-0.0902	NEUTRAL	NA	145	Too-Many
TCGA.AG.A00C.01A	6	33543548	38084298	505	0.0307	NEUTRAL	NA	62	"ANKS1A,ARMC12,BAK1,BRPF3,C6orf1,C6orf106,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DEF6,ETV7,FANCE,FGD2,FKBP5,GRM4,HMGA1,IP6K3,ITPR3,KCTD20,LEMD2,LHFPL5,MAPK13,MAPK14,MDGA1,MLN,MTCH1,NUDT3,PACSIN1,PI16,PIM1,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RNF8,RPL10A,RPS10,RPS10-NUDT3,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,SRSF3,STK38,TAF11,TBC1D22B,TCP11,TEAD3,TMEM217,TULP1,UHRF1BP1,UQCC2,ZFAND3,ZNF76"
TCGA.AA.3966	6	33564295	97755247	17889	-0.1878	NEUTRAL	NA	325	Too-Many
TCGA.AG.3891.01A	6	33625674	33744704	56	0.05	NEUTRAL	NA	4	"IP6K3,ITPR3,LEMD2,UQCC2"
TCGA.AA.A010.01A	6	33626400	33636782	13	-0.3005	NEUTRAL	NA	1	ITPR3
TCGA.AA.A01C.01A	6	33632595	41655423	742	-0.0211	NEUTRAL	NA	87	"ANKS1A,APOBEC2,ARMC12,BRPF3,BTBD9,C6orf1,C6orf106,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DAAM2,DEF6,DNAH8,ETV7,FANCE,FGD2,FKBP5,FOXP4,GLO1,GLP1R,GRM4,HMGA1,IP6K3,ITPR3,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LEMD2,LHFPL5,LRFN2,MAPK13,MAPK14,MDFI,MDGA1,MLN,MOCS1,MTCH1,NCR2,NFYA,NUDT3,OARD1,PACSIN1,PI16,PIM1,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RNF8,RPL10A,RPS10,RPS10-NUDT3,SAYSD1,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,SRSF3,STK38,TAF11,TBC1D22B,TCP11,TEAD3,TFEB,TMEM217,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,TULP1,UHRF1BP1,UNC5CL,UQCC2,ZFAND3,ZNF76"
TCGA.AA.A02K.01A	6	33650284	33661275	15	-0.3191	NEUTRAL	NA	1	ITPR3
TCGA.AA.A02K.01A	6	33662675	35259008	152	0.1144	NEUTRAL	NA	21	"ANKS1A,C6orf1,C6orf106,GRM4,HMGA1,IP6K3,ITPR3,LEMD2,MLN,NUDT3,PACSIN1,RPS10,RPS10-NUDT3,SCUBE3,SNRPC,SPDEF,TAF11,TCP11,UHRF1BP1,UQCC2,ZNF76"
TCGA.AA.A01Q.01A	6	33679285	33703043	6	-0.0359	NEUTRAL	NA	2	"IP6K3,UQCC2"
TCGA.AG.A015.01A	6	33679285	43970409	1137	0.2584	NEUTRAL	NA	139	Too-Many
TCGA.AG.A01W.01A	6	33738232	34898981	109	-0.4129	NEUTRAL	NA	15	"ANKS1A,C6orf1,C6orf106,GRM4,HMGA1,LEMD2,MLN,NUDT3,PACSIN1,RPS10,RPS10-NUDT3,SNRPC,SPDEF,TAF11,UHRF1BP1"
TCGA.AG.3891.01A	6	33745970	33995880	12	0.3594	NEUTRAL	NA	3	"GRM4,LEMD2,MLN"
TCGA.AF.3914.01A	6	33748805	36922486	363	0.1405	NEUTRAL	NA	48	"ANKS1A,ARMC12,BRPF3,C6orf1,C6orf106,C6orf222,C6orf89,CDKN1A,CLPS,CLPSL1,CLPSL2,CPNE5,DEF6,ETV7,FANCE,FKBP5,GRM4,HMGA1,KCTD20,LEMD2,LHFPL5,MAPK13,MAPK14,MLN,NUDT3,PACSIN1,PI16,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RPL10A,RPS10,RPS10-NUDT3,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,SRSF3,STK38,TAF11,TCP11,TEAD3,TULP1,UHRF1BP1,ZNF76"
TCGA.AG.A011.01A	6	33752066	34664176	42	-0.0072	NEUTRAL	NA	11	"C6orf1,C6orf106,GRM4,HMGA1,LEMD2,MLN,NUDT3,PACSIN1,RPS10,RPS10-NUDT3,SPDEF"
TCGA.AG.A025.01A	6	33756131	42933367	868	-0.173	NEUTRAL	NA	108	Too-Many
TCGA.AG.4009.01A	6	33768775	34962041	75	-0.1529	NEUTRAL	NA	14	"ANKS1A,C6orf1,C6orf106,GRM4,HMGA1,MLN,NUDT3,PACSIN1,RPS10,RPS10-NUDT3,SNRPC,SPDEF,TAF11,UHRF1BP1"
TCGA.F4.6569	6	33789580	36985515	829	-0.0836	NEUTRAL	NA	48	"ANKS1A,ARMC12,BRPF3,C6orf1,C6orf106,C6orf222,C6orf89,CDKN1A,CLPS,CLPSL1,CLPSL2,CPNE5,DEF6,ETV7,FANCE,FGD2,FKBP5,GRM4,HMGA1,KCTD20,LHFPL5,MAPK13,MAPK14,MTCH1,NUDT3,PACSIN1,PI16,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RPL10A,RPS10,RPS10-NUDT3,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,SRSF3,STK38,TAF11,TCP11,TEAD3,TULP1,UHRF1BP1,ZNF76"
TCGA.AG.3891.01A	6	34003415	34059622	8	-0.2647	NEUTRAL	NA	1	GRM4
TCGA.AA.A01Q.01A	6	34024279	34392802	22	-0.0449	NEUTRAL	NA	6	"C6orf1,GRM4,HMGA1,NUDT3,RPS10,RPS10-NUDT3"
TCGA.AG.3891.01A	6	34100726	35930274	212	0.2161	NEUTRAL	NA	30	"ANKS1A,ARMC12,C6orf1,C6orf106,CLPS,CLPSL1,CLPSL2,DEF6,FANCE,FKBP5,GRM4,HMGA1,LHFPL5,NUDT3,PACSIN1,PPARD,RPL10A,RPS10,RPS10-NUDT3,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,TAF11,TCP11,TEAD3,TULP1,UHRF1BP1,ZNF76"
TCGA.AA.A00Q.01A	6	34210449	35473516	140	-0.0648	NEUTRAL	NA	21	"ANKS1A,C6orf1,C6orf106,DEF6,FANCE,HMGA1,NUDT3,PACSIN1,PPARD,RPL10A,RPS10,RPS10-NUDT3,SCUBE3,SNRPC,SPDEF,TAF11,TCP11,TEAD3,TULP1,UHRF1BP1,ZNF76"
TCGA.AG.A008.01A	6	34211170	34497991	16	0.132	NEUTRAL	NA	6	"C6orf1,HMGA1,NUDT3,PACSIN1,RPS10,RPS10-NUDT3"
TCGA.AA.A010.01A	6	34256483	34392396	10	-0.4013	NEUTRAL	NA	3	"NUDT3,RPS10,RPS10-NUDT3"
TCGA.AA.A00N.01A	6	34499328	35420271	120	0.2226	NEUTRAL	NA	13	"ANKS1A,C6orf106,DEF6,FANCE,PACSIN1,PPARD,SCUBE3,SNRPC,SPDEF,TAF11,TCP11,UHRF1BP1,ZNF76"
TCGA.AG.A008.01A	6	34499328	170892551	6290	-0.2332	NEUTRAL	NA	631	Too-Many
TCGA.AA.A02E.01A	6	34506990	42647410	762	0.2985	NEUTRAL	NA	90	"ANKS1A,APOBEC2,ARMC12,BRPF3,BTBD9,BYSL,C6orf106,C6orf132,C6orf222,C6orf89,CCDC167,CCND3,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DAAM2,DEF6,DNAH8,ETV7,FANCE,FGD2,FKBP5,FOXP4,FRS3,GLO1,GLP1R,GUCA1A,GUCA1B,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LHFPL5,LRFN2,MAPK13,MAPK14,MDFI,MDGA1,MED20,MOCS1,MRPS10,MTCH1,NCR2,NFYA,OARD1,PGC,PI16,PIM1,PNPLA1,PPARD,PPIL1,PRICKLE4,PXT1,RAB44,RNF8,RPL10A,SAYSD1,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,SRSF3,STK38,TAF11,TAF8,TBC1D22B,TCP11,TEAD3,TFEB,TMEM217,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TULP1,UBR2,UHRF1BP1,UNC5CL,USP49,ZFAND3,ZNF76"
TCGA.DY.A1DG	6	34516291	37050770	657	-0.0142	NEUTRAL	NA	41	"ANKS1A,ARMC12,BRPF3,C6orf106,C6orf222,C6orf89,CDKN1A,CLPS,CLPSL1,CLPSL2,CPNE5,DEF6,ETV7,FANCE,FGD2,FKBP5,KCTD20,LHFPL5,MAPK13,MAPK14,MTCH1,PI16,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RPL10A,SCUBE3,SLC26A8,SNRPC,SPDEF,SRPK1,SRSF3,STK38,TAF11,TCP11,TEAD3,TULP1,UHRF1BP1,ZNF76"
TCGA.G4.6317	6	34532976	153552652	34549	0.0136	NEUTRAL	NA	555	Too-Many
TCGA.QG.A5Z1	6	34659053	170918030	40822	-0.0021	NEUTRAL	NA	629	Too-Many
TCGA.AG.A011.01A	6	34725225	159692309	5698	-0.3558	NEUTRAL	NA	578	Too-Many
TCGA.A6.2678	6	34764442	58403985	7221	0.0188	NEUTRAL	NA	208	Too-Many
TCGA.AA.A010.01A	6	34789392	34803924	6	0.2727	NEUTRAL	NA	1	UHRF1BP1
TCGA.AG.3909.01A	6	34846315	34855522	5	-0.083	NEUTRAL	NA	1	TAF11
TCGA.CK.5914.01A	6	34846315	34855522	5	-0.2245	NEUTRAL	NA	1	TAF11
TCGA.AG.A01W.01A	6	34909922	35304318	54	0.1318	NEUTRAL	NA	5	"ANKS1A,DEF6,SCUBE3,TCP11,ZNF76"
TCGA.AG.4009.01A	6	34985223	35054690	11	0.3214	NEUTRAL	NA	1	ANKS1A
TCGA.AG.3909.01A	6	35021811	35265580	53	0.0099	NEUTRAL	NA	4	"ANKS1A,SCUBE3,TCP11,ZNF76"
TCGA.AA.A01Q.01A	6	35021811	35278249	54	-0.157	NEUTRAL	NA	5	"ANKS1A,DEF6,SCUBE3,TCP11,ZNF76"
TCGA.CK.5914.01A	6	35021811	35393592	68	0.246	NEUTRAL	NA	6	"ANKS1A,DEF6,PPARD,SCUBE3,TCP11,ZNF76"
TCGA.AG.4009.01A	6	35056284	35248868	31	-0.3564	NEUTRAL	NA	4	"ANKS1A,SCUBE3,TCP11,ZNF76"
TCGA.AA.A010.01A	6	35086006	35089852	5	-0.3699	NEUTRAL	NA	1	TCP11
TCGA.AA.A010.01A	6	35209281	35426033	44	0.2023	NEUTRAL	NA	5	"DEF6,FANCE,PPARD,SCUBE3,ZNF76"
TCGA.AG.4009.01A	6	35253848	35393592	26	0.0302	NEUTRAL	NA	3	"DEF6,PPARD,ZNF76"
TCGA.AA.A02K.01A	6	35262905	35430520	24	0.233	NEUTRAL	NA	4	"DEF6,FANCE,PPARD,ZNF76"
TCGA.AA.A01Q.01A	6	35280028	35387857	9	0.2566	NEUTRAL	NA	2	"DEF6,PPARD"
TCGA.AG.A01W.01A	6	35356847	36087958	116	-0.0372	NEUTRAL	NA	14	"ARMC12,CLPS,CLPSL1,CLPSL2,FANCE,FKBP5,LHFPL5,MAPK14,PPARD,RPL10A,SLC26A8,SRPK1,TEAD3,TULP1"
TCGA.F4.6854	6	35370727	38060878	816	0.3486	NEUTRAL	NA	39	"ARMC12,BRPF3,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,ETV7,FANCE,FGD2,FKBP5,KCTD20,LHFPL5,MAPK13,MAPK14,MDGA1,MTCH1,PI16,PIM1,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RNF8,RPL10A,SLC26A8,SRPK1,SRSF3,STK38,TBC1D22B,TEAD3,TMEM217,TULP1,ZFAND3"
TCGA.CK.5914.01A	6	35420271	35478586	33	-0.1765	NEUTRAL	NA	4	"FANCE,RPL10A,TEAD3,TULP1"
TCGA.AG.3909.01A	6	35423515	35480345	32	-0.414	NEUTRAL	NA	4	"FANCE,RPL10A,TEAD3,TULP1"
TCGA.AA.3861.01A	6	35427084	42853946	747	-0.251	NEUTRAL	NA	83	"APOBEC2,ARMC12,BRPF3,BTBD9,BYSL,C6orf132,C6orf222,C6orf89,CCDC167,CCND3,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DAAM2,DNAH8,ETV7,FANCE,FGD2,FKBP5,FOXP4,FRS3,GLO1,GLP1R,GLTSCR1L,GUCA1A,GUCA1B,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LHFPL5,LRFN2,MAPK13,MAPK14,MDFI,MDGA1,MED20,MOCS1,MRPS10,MTCH1,NCR2,NFYA,OARD1,PGC,PI16,PIM1,PNPLA1,PPIL1,PRICKLE4,PRPH2,PXT1,RAB44,RNF8,RPL10A,RPL7L1,SAYSD1,SLC26A8,SRPK1,SRSF3,STK38,TAF8,TBC1D22B,TBCC,TEAD3,TFEB,TMEM217,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TULP1,UBR2,UNC5CL,USP49,ZFAND3"
TCGA.AA.3862.01A	6	35427084	42853946	755	-0.1156	NEUTRAL	NA	83	"APOBEC2,ARMC12,BRPF3,BTBD9,BYSL,C6orf132,C6orf222,C6orf89,CCDC167,CCND3,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DAAM2,DNAH8,ETV7,FANCE,FGD2,FKBP5,FOXP4,FRS3,GLO1,GLP1R,GLTSCR1L,GUCA1A,GUCA1B,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LHFPL5,LRFN2,MAPK13,MAPK14,MDFI,MDGA1,MED20,MOCS1,MRPS10,MTCH1,NCR2,NFYA,OARD1,PGC,PI16,PIM1,PNPLA1,PPIL1,PRICKLE4,PRPH2,PXT1,RAB44,RNF8,RPL10A,RPL7L1,SAYSD1,SLC26A8,SRPK1,SRSF3,STK38,TAF8,TBC1D22B,TBCC,TEAD3,TFEB,TMEM217,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TULP1,UBR2,UNC5CL,USP49,ZFAND3"
TCGA.AA.A02K.01A	6	35433970	35454210	16	-0.1344	NEUTRAL	NA	3	"FANCE,RPL10A,TEAD3"
TCGA.AG.4009.01A	6	35436526	35754728	39	-0.1313	NEUTRAL	NA	7	"ARMC12,CLPSL1,CLPSL2,FKBP5,RPL10A,TEAD3,TULP1"
TCGA.AA.A01Q.01A	6	35442779	36568882	138	0.0609	NEUTRAL	NA	20	"ARMC12,BRPF3,C6orf222,CLPS,CLPSL1,CLPSL2,ETV7,FKBP5,KCTD20,LHFPL5,MAPK13,MAPK14,PNPLA1,PXT1,SLC26A8,SRPK1,SRSF3,STK38,TEAD3,TULP1"
TCGA.AG.A016.01A	6	35473516	36762300	158	0.319	NEUTRAL	NA	22	"ARMC12,BRPF3,C6orf222,CDKN1A,CLPS,CLPSL1,CLPSL2,CPNE5,ETV7,FKBP5,KCTD20,LHFPL5,MAPK13,MAPK14,PNPLA1,PXT1,RAB44,SLC26A8,SRPK1,SRSF3,STK38,TULP1"
TCGA.AA.A00Q.01A	6	35476937	35782282	28	-0.3746	NEUTRAL	NA	7	"ARMC12,CLPS,CLPSL1,CLPSL2,FKBP5,LHFPL5,TULP1"
TCGA.AA.A02K.01A	6	35543563	40399432	484	0.0371	NEUTRAL	NA	46	"ARMC12,BRPF3,BTBD9,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DAAM2,DNAH8,ETV7,FGD2,FKBP5,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LHFPL5,LRFN2,MAPK13,MAPK14,MDGA1,MOCS1,MTCH1,PI16,PIM1,PNPLA1,PPIL1,PXT1,RAB44,RNF8,SAYSD1,SLC26A8,SRPK1,SRSF3,STK38,TBC1D22B,TMEM217,ZFAND3"
TCGA.AA.A00D.01A	6	35587892	39325006	369	-0.1355	NEUTRAL	NA	43	"ARMC12,BRPF3,BTBD9,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DNAH8,ETV7,FGD2,FKBP5,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LHFPL5,MAPK13,MAPK14,MDGA1,MTCH1,PI16,PIM1,PNPLA1,PPIL1,PXT1,RAB44,RNF8,SAYSD1,SLC26A8,SRPK1,SRSF3,STK38,TBC1D22B,TMEM217,ZFAND3"
TCGA.CK.5914.01A	6	35762874	36185641	68	0.3271	NEUTRAL	NA	7	"BRPF3,CLPS,LHFPL5,MAPK13,MAPK14,SLC26A8,SRPK1"
TCGA.AG.3909.01A	6	35782282	36297876	84	0.2407	NEUTRAL	NA	8	"BRPF3,C6orf222,LHFPL5,MAPK13,MAPK14,PNPLA1,SLC26A8,SRPK1"
TCGA.AG.4009.01A	6	35787122	36076119	46	-0.1258	NEUTRAL	NA	4	"LHFPL5,MAPK14,SLC26A8,SRPK1"
TCGA.AA.A00Q.01A	6	35787122	36569441	104	-0.0857	NEUTRAL	NA	13	"BRPF3,C6orf222,ETV7,KCTD20,LHFPL5,MAPK13,MAPK14,PNPLA1,PXT1,SLC26A8,SRPK1,SRSF3,STK38"
TCGA.AA.3870	6	35887465	40359472	1678	0.0658	NEUTRAL	NA	40	"BRPF3,BTBD9,C6orf222,C6orf89,CCDC167,CDKN1A,CMTR1,CPNE5,DAAM2,DNAH8,ETV7,FGD2,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LRFN2,MAPK13,MAPK14,MDGA1,MOCS1,MTCH1,PI16,PIM1,PNPLA1,PPIL1,PXT1,RAB44,RNF8,SAYSD1,SLC26A8,SRPK1,SRSF3,STK38,TBC1D22B,TMEM217,ZFAND3"
TCGA.AA.3655	6	35887465	62409650	7121	-0.0241	NEUTRAL	NA	192	Too-Many
TCGA.AA.A00N.01A	6	35888179	36185641	47	-0.0292	NEUTRAL	NA	5	"BRPF3,MAPK13,MAPK14,SLC26A8,SRPK1"
TCGA.AA.3509.01A	6	35949839	42637780	644	-0.0473	NEUTRAL	NA	68	"APOBEC2,BRPF3,BTBD9,BYSL,C6orf132,C6orf222,C6orf89,CCDC167,CCND3,CDKN1A,CMTR1,CPNE5,DAAM2,DNAH8,ETV7,FGD2,FOXP4,FRS3,GLO1,GLP1R,GUCA1A,GUCA1B,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LRFN2,MAPK13,MAPK14,MDFI,MDGA1,MED20,MOCS1,MRPS10,MTCH1,NCR2,NFYA,OARD1,PGC,PI16,PIM1,PNPLA1,PPIL1,PRICKLE4,PXT1,RAB44,RNF8,SAYSD1,SLC26A8,SRSF3,STK38,TAF8,TBC1D22B,TFEB,TMEM217,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,UBR2,UNC5CL,USP49,ZFAND3"
TCGA.AG.3891.01A	6	35987260	42712730	610	0.05	NEUTRAL	NA	70	"APOBEC2,BRPF3,BTBD9,BYSL,C6orf132,C6orf222,C6orf89,CCDC167,CCND3,CDKN1A,CMTR1,CPNE5,DAAM2,DNAH8,ETV7,FGD2,FOXP4,FRS3,GLO1,GLP1R,GUCA1A,GUCA1B,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LRFN2,MAPK13,MAPK14,MDFI,MDGA1,MED20,MOCS1,MRPS10,MTCH1,NCR2,NFYA,OARD1,PGC,PI16,PIM1,PNPLA1,PPIL1,PRICKLE4,PRPH2,PXT1,RAB44,RNF8,SAYSD1,SLC26A8,SRSF3,STK38,TAF8,TBC1D22B,TBCC,TFEB,TMEM217,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,UBR2,UNC5CL,USP49,ZFAND3"
TCGA.DM.A28F	6	35991473	101684706	18312	-0.0092	NEUTRAL	NA	303	Too-Many
TCGA.AA.3685	6	36088938	39629396	1294	0.3302	NEUTRAL	NA	34	"BRPF3,BTBD9,C6orf222,C6orf89,CCDC167,CDKN1A,CMTR1,CPNE5,DNAH8,ETV7,FGD2,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,MAPK13,MDGA1,MTCH1,PI16,PIM1,PNPLA1,PPIL1,PXT1,RAB44,RNF8,SAYSD1,SRSF3,STK38,TBC1D22B,TMEM217,ZFAND3"
TCGA.AA.A01R	6	36157191	170918030	40931	0.0069	NEUTRAL	NA	605	Too-Many
TCGA.D5.6539	6	36172373	36464957	89	-0.0309	NEUTRAL	NA	7	"BRPF3,C6orf222,ETV7,KCTD20,PNPLA1,PXT1,STK38"
TCGA.AG.4009.01A	6	36193014	36368169	30	0.137	NEUTRAL	NA	5	"BRPF3,C6orf222,ETV7,PNPLA1,PXT1"
TCGA.AG.A01W.01A	6	36211471	41851094	500	-0.13	NEUTRAL	NA	54	"APOBEC2,BTBD9,C6orf222,C6orf89,CCDC167,CDKN1A,CMTR1,CPNE5,DAAM2,DNAH8,ETV7,FGD2,FOXP4,FRS3,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LRFN2,MDFI,MDGA1,MOCS1,MTCH1,NCR2,NFYA,OARD1,PGC,PI16,PIM1,PNPLA1,PPIL1,PRICKLE4,PXT1,RAB44,RNF8,SAYSD1,SRSF3,STK38,TBC1D22B,TFEB,TMEM217,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,UNC5CL,USP49,ZFAND3"
TCGA.D5.6538	6	36243493	78979397	11690	0.3688	NEUTRAL	NA	223	Too-Many
TCGA.CK.5914.01A	6	36275312	36723952	60	0.1792	NEUTRAL	NA	10	"C6orf222,CDKN1A,CPNE5,ETV7,KCTD20,PNPLA1,PXT1,RAB44,SRSF3,STK38"
TCGA.AG.4015	6	36289144	45804144	3219	0.3737	NEUTRAL	NA	115	Too-Many
TCGA.AA.A00N.01A	6	36334391	36723952	48	-0.3416	NEUTRAL	NA	8	"CDKN1A,CPNE5,ETV7,KCTD20,PXT1,RAB44,SRSF3,STK38"
TCGA.AG.4009.01A	6	36437826	36653453	26	-0.1385	NEUTRAL	NA	4	"CDKN1A,KCTD20,SRSF3,STK38"
TCGA.AG.3909.01A	6	36437826	36723952	34	-0.0116	NEUTRAL	NA	6	"CDKN1A,CPNE5,KCTD20,RAB44,SRSF3,STK38"
TCGA.D5.6539	6	36468132	170918030	40741	0.3706	NEUTRAL	NA	599	Too-Many
TCGA.CM.5341	6	36492823	36589339	18	-0.4363	NEUTRAL	NA	2	"SRSF3,STK38"
TCGA.AG.3592	6	36716416	152200429	33526	0.3488	NEUTRAL	NA	515	Too-Many
TCGA.AA.A00Q.01A	6	36742689	38119960	112	-0.1409	NEUTRAL	NA	14	"C6orf89,CCDC167,CMTR1,CPNE5,FGD2,MDGA1,MTCH1,PI16,PIM1,PPIL1,RNF8,TBC1D22B,TMEM217,ZFAND3"
TCGA.AG.4009.01A	6	36762300	36884184	13	-0.02	NEUTRAL	NA	3	"C6orf89,CPNE5,PPIL1"
TCGA.AG.A016.01A	6	36765884	36842422	9	-0.1976	NEUTRAL	NA	3	"C6orf89,CPNE5,PPIL1"
TCGA.AA.A00N.01A	6	36766165	36953599	34	-0.4672	NEUTRAL	NA	5	"C6orf89,CPNE5,MTCH1,PI16,PPIL1"
TCGA.CK.5914.01A	6	36766165	38723701	153	0.2714	NEUTRAL	NA	17	"BTBD9,C6orf89,CCDC167,CMTR1,CPNE5,DNAH8,FGD2,GLO1,MDGA1,MTCH1,PI16,PIM1,PPIL1,RNF8,TBC1D22B,TMEM217,ZFAND3"
TCGA.AA.A01Q.01A	6	36789812	36891076	13	0.0319	NEUTRAL	NA	3	"C6orf89,CPNE5,PPIL1"
TCGA.AG.3909.01A	6	36823560	36922486	11	-0.0237	NEUTRAL	NA	3	"C6orf89,PI16,PPIL1"
TCGA.AG.A016.01A	6	36867155	43970409	797	0.2955	NEUTRAL	NA	91	"ABCC10,APOBEC2,BTBD9,BYSL,C6orf132,C6orf223,C6orf226,C6orf89,CCDC167,CCND3,CMTR1,CNPY3,CRIP3,CUL7,CUL9,DAAM2,DLK2,DNAH8,DNPH1,FGD2,FOXP4,FRS3,GLO1,GLP1R,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,KCNK16,KCNK17,KCNK5,KIF6,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MDGA1,MEA1,MED20,MOCS1,MRPL2,MRPS10,MRPS18A,MTCH1,NCR2,NFYA,OARD1,PEX6,PGC,PI16,PIM1,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RNF8,RPL7L1,RRP36,RSPH9,SAYSD1,SLC22A7,SRF,TAF8,TBC1D22B,TBCC,TFEB,TJAP1,TMEM217,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZFAND3,ZNF318"
TCGA.AG.3909.01A	6	36929185	36945362	10	-0.4668	NEUTRAL	NA	2	"MTCH1,PI16"
TCGA.AG.4009.01A	6	36973526	37012617	15	0.2673	NEUTRAL	NA	1	FGD2
TCGA.AG.3909.01A	6	36973526	37467518	67	0.1921	NEUTRAL	NA	7	"CCDC167,CMTR1,FGD2,PIM1,RNF8,TBC1D22B,TMEM217"
TCGA.AF.3914.01A	6	36973526	41743156	374	0.245	NEUTRAL	NA	37	"APOBEC2,BTBD9,CCDC167,CMTR1,DAAM2,DNAH8,FGD2,FOXP4,FRS3,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,LRFN2,MDFI,MDGA1,MOCS1,NCR2,NFYA,OARD1,PGC,PIM1,RNF8,SAYSD1,TBC1D22B,TFEB,TMEM217,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,UNC5CL,ZFAND3"
TCGA.AA.A01Q.01A	6	36989235	37452837	58	-0.0191	NEUTRAL	NA	7	"CCDC167,CMTR1,FGD2,PIM1,RNF8,TBC1D22B,TMEM217"
TCGA.F4.6569	6	36989390	170918030	40622	0.2627	NEUTRAL	NA	590	Too-Many
TCGA.AA.A00N.01A	6	37012617	37180657	6	-0.4877	NEUTRAL	NA	2	"PIM1,TMEM217"
TCGA.AA.A01F.01A	6	37012617	42933736	445	0.0741	NEUTRAL	NA	58	"APOBEC2,BTBD9,BYSL,C6orf132,C6orf226,CCDC167,CCND3,CMTR1,CNPY3,DAAM2,DNAH8,FOXP4,FRS3,GLO1,GLP1R,GLTSCR1L,GNMT,GUCA1A,GUCA1B,KCNK16,KCNK17,KCNK5,KIF6,LRFN2,MDFI,MDGA1,MED20,MOCS1,MRPS10,NCR2,NFYA,OARD1,PEX6,PGC,PIM1,PRICKLE4,PRPH2,PTCRA,RNF8,RPL7L1,SAYSD1,TAF8,TBC1D22B,TBCC,TFEB,TMEM217,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,UBR2,UNC5CL,USP49,ZFAND3"
TCGA.DY.A1DG	6	37053843	37578882	178	0.3414	NEUTRAL	NA	6	"CCDC167,CMTR1,PIM1,RNF8,TBC1D22B,TMEM217"
TCGA.AG.4009.01A	6	37182916	38906527	159	-1.00E-04	NEUTRAL	NA	10	"BTBD9,CCDC167,CMTR1,DNAH8,GLO1,MDGA1,RNF8,TBC1D22B,TMEM217,ZFAND3"
TCGA.AA.A00N.01A	6	37321891	37623425	50	-0.3315	NEUTRAL	NA	4	"CCDC167,CMTR1,MDGA1,RNF8"
TCGA.D5.6898	6	37371156	52703765	4977	0.1513	NEUTRAL	NA	142	Too-Many
TCGA.AG.A02X.01A	6	37441207	109691543	3079	0.1868	NEUTRAL	NA	307	Too-Many
TCGA.AG.3584	6	37513252	41561240	1683	-0.0694	NEUTRAL	NA	26	"APOBEC2,BTBD9,DAAM2,DNAH8,FOXP4,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,LRFN2,MDGA1,MOCS1,NCR2,NFYA,OARD1,SAYSD1,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,UNC5CL,ZFAND3"
TCGA.AZ.6599	6	37518240	170918030	40468	0.0264	NEUTRAL	NA	583	Too-Many
TCGA.AA.A01Q.01A	6	37617884	39047288	114	0.1277	NEUTRAL	NA	6	"BTBD9,DNAH8,GLO1,GLP1R,MDGA1,ZFAND3"
TCGA.AA.A02J.01A	6	37617884	170892551	5746	-0.0801	NEUTRAL	NA	583	Too-Many
TCGA.AA.A00N.01A	6	37625983	38565639	19	0.3499	NEUTRAL	NA	3	"BTBD9,MDGA1,ZFAND3"
TCGA.AG.3909.01A	6	37631696	38705568	27	0.1797	NEUTRAL	NA	5	"BTBD9,DNAH8,GLO1,MDGA1,ZFAND3"
TCGA.AA.3850	6	37819905	38045835	43	-0.01485	NEUTRAL	NA	1	ZFAND3
TCGA.AA.3844	6	37819905	38076163	52	-0.184	NEUTRAL	NA	1	ZFAND3
TCGA.AA.3941	6	37874970	39953930	808	-0.2772	NEUTRAL	NA	12	"BTBD9,DAAM2,DNAH8,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,MOCS1,SAYSD1,ZFAND3"
TCGA.CM.5341	6	37882779	38749768	278	-0.2074	NEUTRAL	NA	4	"BTBD9,DNAH8,GLO1,ZFAND3"
TCGA.AZ.6608	6	37988312	121775329	23302	-0.0288	NEUTRAL	NA	364	Too-Many
TCGA.AA.3982	6	38033918	38082053	18	-0.13	NEUTRAL	NA	1	ZFAND3
TCGA.AA.3850	6	38058708	38108892	13	-0.05965	NEUTRAL	NA	1	ZFAND3
TCGA.F4.6854	6	38076163	40540481	1077	0.0003	NEUTRAL	NA	13	"BTBD9,DAAM2,DNAH8,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,LRFN2,MOCS1,SAYSD1,ZFAND3"
TCGA.AA.3844	6	38077911	38162309	32	0.2746	NEUTRAL	NA	2	"BTBD9,ZFAND3"
TCGA.AG.A00C.01A	6	38119960	38561703	10	-0.3584	NEUTRAL	NA	2	"BTBD9,ZFAND3"
TCGA.AA.A00Q.01A	6	38142709	38997830	95	0.1613	NEUTRAL	NA	3	"BTBD9,DNAH8,GLO1"
TCGA.AA.3844	6	38166438	38585652	139	-0.1622	NEUTRAL	NA	1	BTBD9
TCGA.AA.3850	6	38202821	38538831	115	-0.15035	NEUTRAL	NA	1	BTBD9
TCGA.AA.3982	6	38209608	38948306	278	0.1952	NEUTRAL	NA	3	"BTBD9,DNAH8,GLO1"
TCGA.AY.5543	6	38502619	162875479	36524	0.02	NEUTRAL	NA	547	Too-Many
TCGA.SS.A7HO	6	38538831	162998048	36871	0.0338	NEUTRAL	NA	547	Too-Many
TCGA.AA.3850	6	38552273	38632576	18	-0.08865	NEUTRAL	NA	1	BTBD9
TCGA.AG.A00C.01A	6	38565639	38650521	4	-0.032	NEUTRAL	NA	2	"BTBD9,GLO1"
TCGA.AA.3844	6	38595400	38719849	43	0.1611	NEUTRAL	NA	3	"BTBD9,DNAH8,GLO1"
TCGA.AA.A00N.01A	6	38645049	38705568	12	-0.2906	NEUTRAL	NA	2	"DNAH8,GLO1"
TCGA.AG.A00C.01A	6	38652128	38704796	7	0.3239	NEUTRAL	NA	2	"DNAH8,GLO1"
TCGA.DM.A1D7	6	38663443	40092330	618	-0.4371	NEUTRAL	NA	10	"DAAM2,DNAH8,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,MOCS1,SAYSD1"
TCGA.AG.A00C.01A	6	38705568	40399461	168	-0.1628	NEUTRAL	NA	10	"DAAM2,DNAH8,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,LRFN2,MOCS1,SAYSD1"
TCGA.AA.3844	6	38722185	38977465	130	-0.1747	NEUTRAL	NA	1	DNAH8
TCGA.AA.3850	6	38722185	38978770	132	-0.07715	NEUTRAL	NA	1	DNAH8
TCGA.CM.5341	6	38755652	39034483	137	0.317	NEUTRAL	NA	2	"DNAH8,GLP1R"
TCGA.AA.A010.01A	6	38781778	38802290	8	-0.4271	NEUTRAL	NA	1	DNAH8
TCGA.AA.A010.01A	6	38805671	38835799	15	0.1991	NEUTRAL	NA	1	DNAH8
TCGA.AA.A010.01A	6	38838157	38906527	30	-0.3836	NEUTRAL	NA	1	DNAH8
TCGA.AG.3909.01A	6	38913192	38951933	8	0.0247	NEUTRAL	NA	1	DNAH8
TCGA.AG.4009.01A	6	38913192	39033942	17	-0.4219	NEUTRAL	NA	2	"DNAH8,GLP1R"
TCGA.CK.5914.01A	6	38917179	38942103	5	-0.2165	NEUTRAL	NA	1	DNAH8
TCGA.AA.A00O.01A	6	38917179	38994300	11	0.2179	NEUTRAL	NA	1	DNAH8
TCGA.AA.A00N.01A	6	38917179	39025199	14	-0.2027	NEUTRAL	NA	2	"DNAH8,GLP1R"
TCGA.AG.3909.01A	6	38957761	39025199	7	0.3132	NEUTRAL	NA	2	"DNAH8,GLP1R"
TCGA.AA.3844	6	38977969	39338434	197	0.1784	NEUTRAL	NA	7	"DNAH8,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,SAYSD1"
TCGA.AA.3850	6	38982243	39340209	197	0.36945	NEUTRAL	NA	7	"DNAH8,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,SAYSD1"
TCGA.AA.A00O.01A	6	38997830	39607338	45	-0.363	NEUTRAL	NA	7	"DNAH8,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,SAYSD1"
TCGA.AA.A00Q.01A	6	39024135	39895016	64	-0.1258	NEUTRAL	NA	8	"DAAM2,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,MOCS1,SAYSD1"
TCGA.CM.5341	6	39034995	39106275	34	-0.1742	NEUTRAL	NA	2	"GLP1R,SAYSD1"
TCGA.AG.4009.01A	6	39040589	40996080	80	0.1459	NEUTRAL	NA	10	"DAAM2,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,LRFN2,MOCS1,SAYSD1,UNC5CL"
TCGA.AG.3611.01A	6	39046029	39876763	48	-0.1774	NEUTRAL	NA	8	"DAAM2,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,MOCS1,SAYSD1"
TCGA.AA.A00N.01A	6	39073196	39304219	21	-0.3746	NEUTRAL	NA	5	"KCNK16,KCNK17,KCNK5,KIF6,SAYSD1"
TCGA.AG.3909.01A	6	39073196	39304219	18	-0.218	NEUTRAL	NA	5	"KCNK16,KCNK17,KCNK5,KIF6,SAYSD1"
TCGA.CK.5914.01A	6	39077006	39304219	20	0.0273	NEUTRAL	NA	5	"KCNK16,KCNK17,KCNK5,KIF6,SAYSD1"
TCGA.AG.A01N.01A	6	39082607	44390342	680	-0.1373	NEUTRAL	NA	87	"AARS2,ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DAAM2,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KCNK16,KCNK17,KCNK5,KIF6,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MOCS1,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SAYSD1,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.QL.A97D	6	39092966	55411287	5317	0.1913	NEUTRAL	NA	148	Too-Many
TCGA.CM.5341	6	39109706	40092330	402	0.2572	NEUTRAL	NA	6	"DAAM2,KCNK16,KCNK17,KCNK5,KIF6,MOCS1"
TCGA.AA.A01Q.01A	6	39311437	39873214	30	0.0382	NEUTRAL	NA	3	"DAAM2,KIF6,MOCS1"
TCGA.AA.A00D.01A	6	39328134	41011627	40	-0.4451	NEUTRAL	NA	6	"DAAM2,KIF6,LRFN2,MOCS1,TSPO2,UNC5CL"
TCGA.AA.3982	6	39335923	39593812	77	0.2209	NEUTRAL	NA	1	KIF6
TCGA.AA.3844	6	39339890	39968754	235	-0.1293	NEUTRAL	NA	3	"DAAM2,KIF6,MOCS1"
TCGA.AA.3850	6	39340811	39588451	72	0.02075	NEUTRAL	NA	1	KIF6
TCGA.AA.3967.01A	6	39552651	39828671	11	-0.5024	NEUTRAL	NA	2	"DAAM2,KIF6"
TCGA.AA.3850	6	39625373	39745168	44	-0.06745	NEUTRAL	NA	1	KIF6
TCGA.AA.3982	6	39625373	40004129	167	0.2677	NEUTRAL	NA	3	"DAAM2,KIF6,MOCS1"
TCGA.AA.3685	6	39637814	40038399	167	-0.1344	NEUTRAL	NA	3	"DAAM2,KIF6,MOCS1"
TCGA.DY.A1DG	6	39658650	39757488	43	0.2738	NEUTRAL	NA	1	KIF6
TCGA.AZ.4684.01A	6	39824048	42637780	244	0.1109	NEUTRAL	NA	32	"APOBEC2,BYSL,C6orf132,CCND3,DAAM2,FOXP4,FRS3,GUCA1A,GUCA1B,LRFN2,MDFI,MED20,MOCS1,MRPS10,NCR2,NFYA,OARD1,PGC,PRICKLE4,TAF8,TFEB,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,UBR2,UNC5CL,USP49"
TCGA.AA.3967.01A	6	39838068	41309529	82	-0.4074	NEUTRAL	NA	14	"APOBEC2,DAAM2,LRFN2,MOCS1,NCR2,NFYA,OARD1,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,UNC5CL"
TCGA.A6.3808.01A	6	39851687	42996783	316	-0.1341	NEUTRAL	NA	45	"APOBEC2,BYSL,C6orf132,C6orf226,CCND3,CNPY3,DAAM2,FOXP4,FRS3,GLTSCR1L,GNMT,GUCA1A,GUCA1B,KLHDC3,LRFN2,MDFI,MEA1,MED20,MOCS1,MRPS10,NCR2,NFYA,OARD1,PEX6,PGC,PPP2R5D,PRICKLE4,PRPH2,PTCRA,RPL7L1,RRP36,TAF8,TBCC,TFEB,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,UBR2,UNC5CL,USP49"
TCGA.AG.3611.01A	6	39877530	41065033	36	-0.4904	NEUTRAL	NA	7	"APOBEC2,LRFN2,MOCS1,NFYA,OARD1,TSPO2,UNC5CL"
TCGA.AA.3850	6	39905195	39968754	41	-0.09035	NEUTRAL	NA	0	None
TCGA.A6.6653	6	39915348	156484370	33875	0.0119	NEUTRAL	NA	504	Too-Many
TCGA.DC.6682	6	39965975	40711809	409	-0.4876	NEUTRAL	NA	1	LRFN2
TCGA.DY.A1DG	6	40003678	40092330	24	0.3089	NEUTRAL	NA	0	None
TCGA.AA.3982	6	40038399	40124442	38	-0.2134	NEUTRAL	NA	0	None
TCGA.AA.3685	6	40039030	41488842	669	0.2887	NEUTRAL	NA	12	"APOBEC2,LRFN2,NCR2,NFYA,OARD1,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,UNC5CL"
TCGA.AA.3844	6	40119545	46151385	1948	0.0734	NEUTRAL	NA	85	"AARS2,ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CLIC5,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,ENPP4,ENPP5,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,RUNX2,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.3982	6	40124946	40935727	439	0.3386	NEUTRAL	NA	1	LRFN2
TCGA.AA.3941	6	40124946	44710303	1513	-0.056	NEUTRAL	NA	80	"AARS2,ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.3850	6	40132913	44705302	1514	0.29895	NEUTRAL	NA	80	"AARS2,ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AG.3909.01A	6	40359692	41029040	14	0.1148	NEUTRAL	NA	4	"APOBEC2,LRFN2,TSPO2,UNC5CL"
TCGA.AA.A01Q.01A	6	40359692	41065033	28	-0.1372	NEUTRAL	NA	6	"APOBEC2,LRFN2,NFYA,OARD1,TSPO2,UNC5CL"
TCGA.AA.3870	6	40364324	40583869	137	-0.5114	NEUTRAL	NA	1	LRFN2
TCGA.AF.4110	6	40392368	66235214	6251	0.255	NEUTRAL	NA	158	Too-Many
TCGA.AA.A02K.01A	6	40399856	41001630	8	-0.388	NEUTRAL	NA	2	"LRFN2,UNC5CL"
TCGA.D5.6531	6	40458215	170918030	39218	-0.1912	NEUTRAL	NA	570	Too-Many
TCGA.F4.6854	6	40542072	48206865	2373	0.3618	NEUTRAL	NA	100	"AARS2,ABCC10,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CD2AP,CDC5L,CLIC5,CNPY3,CRIP3,CUL7,CUL9,CYP39A1,DLK2,DNPH1,ENPP4,ENPP5,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MEP1A,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,OPN5,PEX6,PGC,PLA2G7,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCHD4,PTCRA,PTK7,RCAN2,RPL7L1,RRP36,RSPH9,RUNX2,SLC22A7,SLC25A27,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TAF8,TBCC,TCTE1,TDRD6,TFEB,TJAP1,TMEM151B,TMEM63B,TNFRSF21,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.3870	6	40585046	43462201	824	0.1188	NEUTRAL	NA	56	"ABCC10,APOBEC2,BYSL,C6orf132,C6orf226,CCND3,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GUCA1A,GUCA1B,KLC4,KLHDC3,MDFI,MEA1,MED20,MRPL2,MRPS10,NCR2,NFYA,OARD1,PEX6,PGC,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,SLC22A7,SRF,TAF8,TBCC,TFEB,TJAP1,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,ZNF318"
TCGA.AA.A00N.01A	6	40996080	41029040	12	0.0253	NEUTRAL	NA	3	"APOBEC2,TSPO2,UNC5CL"
TCGA.AG.A00C.01A	6	40996080	41065033	26	0.3492	NEUTRAL	NA	5	"APOBEC2,NFYA,OARD1,TSPO2,UNC5CL"
TCGA.AG.4009.01A	6	40998086	41036547	13	-0.4333	NEUTRAL	NA	4	"APOBEC2,OARD1,TSPO2,UNC5CL"
TCGA.AA.A02K.01A	6	41002433	52109113	1003	0.0644	NEUTRAL	NA	118	Too-Many
TCGA.AA.A00D.01A	6	41021060	41117341	17	0.2028	NEUTRAL	NA	4	"APOBEC2,NFYA,OARD1,TREML1"
TCGA.AA.A00Q.01A	6	41021060	42185494	122	-0.1274	NEUTRAL	NA	25	"APOBEC2,BYSL,C6orf132,CCND3,FOXP4,FRS3,GUCA1A,GUCA1B,MDFI,MED20,MRPS10,NCR2,NFYA,OARD1,PGC,PRICKLE4,TAF8,TFEB,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,USP49"
TCGA.AA.3815.01A	6	41057901	138199542	4393	-0.0545	NEUTRAL	NA	421	Too-Many
TCGA.AG.4009.01A	6	41060600	41658394	50	0.1456	NEUTRAL	NA	10	"FOXP4,MDFI,NCR2,NFYA,TFEB,TREM1,TREM2,TREML1,TREML2,TREML4"
TCGA.AA.A00F.01A	6	41117341	41309529	27	-0.0522	NEUTRAL	NA	6	"NCR2,TREM1,TREM2,TREML1,TREML2,TREML4"
TCGA.AG.A00C.01A	6	41117341	41554717	33	-0.3874	NEUTRAL	NA	7	"FOXP4,NCR2,TREM1,TREM2,TREML1,TREML2,TREML4"
TCGA.AG.3611.01A	6	41117341	50740311	766	-0.1333	NEUTRAL	NA	109	Too-Many
TCGA.AA.A00N.01A	6	41196413	41204173	4	-0.0873	NEUTRAL	NA	1	TREML4
TCGA.AG.3909.01A	6	41196413	41204173	4	-0.0492	NEUTRAL	NA	1	TREML4
TCGA.AA.A01Q.01A	6	41318364	41537968	5	-0.0143	NEUTRAL	NA	2	"FOXP4,NCR2"
TCGA.AA.A00N.01A	6	41318364	41658394	30	-0.1412	NEUTRAL	NA	4	"FOXP4,MDFI,NCR2,TFEB"
TCGA.AG.3909.01A	6	41318364	42883735	165	-0.1197	NEUTRAL	NA	25	"BYSL,C6orf132,C6orf226,CCND3,FOXP4,FRS3,GLTSCR1L,GUCA1A,GUCA1B,MDFI,MED20,MRPS10,NCR2,PGC,PRICKLE4,PRPH2,PTCRA,RPL7L1,TAF8,TBCC,TFEB,TOMM6,TRERF1,UBR2,USP49"
TCGA.AA.3967.01A	6	41318364	42935066	187	-0.0588	NEUTRAL	NA	28	"BYSL,C6orf132,C6orf226,CCND3,CNPY3,FOXP4,FRS3,GLTSCR1L,GNMT,GUCA1A,GUCA1B,MDFI,MED20,MRPS10,NCR2,PEX6,PGC,PRICKLE4,PRPH2,PTCRA,RPL7L1,TAF8,TBCC,TFEB,TOMM6,TRERF1,UBR2,USP49"
TCGA.AA.A00D.01A	6	41318364	43155413	265	-0.0722	NEUTRAL	NA	38	"BYSL,C6orf132,C6orf226,CCND3,CNPY3,CUL7,CUL9,FOXP4,FRS3,GLTSCR1L,GNMT,GUCA1A,GUCA1B,KLC4,KLHDC3,MDFI,MEA1,MED20,MRPL2,MRPS10,NCR2,PEX6,PGC,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,SRF,TAF8,TBCC,TFEB,TOMM6,TRERF1,UBR2,USP49"
TCGA.AA.A00F.01A	6	41318364	44122390	444	0.3437	NEUTRAL	NA	59	"ABCC10,BYSL,C6orf132,C6orf223,C6orf226,CCND3,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,KLC4,KLHDC3,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SRF,TAF8,TBCC,TFEB,TJAP1,TMEM63B,TOMM6,TRERF1,TTBK1,UBR2,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.DY.A1DG	6	41449123	140101753	27766	0.3583	NEUTRAL	NA	427	Too-Many
TCGA.CK.5914.01A	6	41470226	42023640	81	-0.1623	NEUTRAL	NA	12	"BYSL,CCND3,FOXP4,FRS3,MDFI,MED20,PGC,PRICKLE4,TAF8,TFEB,TOMM6,USP49"
TCGA.AA.3685	6	41488934	42343147	250	-0.0714	NEUTRAL	NA	17	"BYSL,C6orf132,CCND3,FOXP4,FRS3,GUCA1A,GUCA1B,MDFI,MED20,MRPS10,PGC,PRICKLE4,TAF8,TFEB,TOMM6,TRERF1,USP49"
TCGA.AA.A01Q.01A	6	41545674	41652775	19	-0.4191	NEUTRAL	NA	3	"FOXP4,MDFI,TFEB"
TCGA.AA.A010.01A	6	41545674	41658394	23	0.3	NEUTRAL	NA	3	"FOXP4,MDFI,TFEB"
TCGA.AG.A00C.01A	6	41555060	42141323	66	0.2144	NEUTRAL	NA	14	"BYSL,C6orf132,CCND3,FOXP4,FRS3,GUCA1A,MDFI,MED20,PGC,PRICKLE4,TAF8,TFEB,TOMM6,USP49"
TCGA.EI.6883	6	41643385	44308305	638	0.029	NEUTRAL	NA	64	"AARS2,ABCC10,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NFKBIE,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SRF,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TRERF1,TTBK1,UBR2,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A01C.01A	6	41657423	44357967	531	-0.291	NEUTRAL	NA	66	"AARS2,ABCC10,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NFKBIE,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TRERF1,TTBK1,UBR2,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A01Q.01A	6	41707485	41739503	10	-0.0584	NEUTRAL	NA	2	"FRS3,PGC"
TCGA.AA.3666	6	41726137	41744947	4	0.3191	NEUTRAL	NA	1	FRS3
TCGA.AZ.4614	6	41726137	135414792	25843	0.2389	NEUTRAL	NA	396	Too-Many
TCGA.AA.A01Q.01A	6	41752661	42906298	131	0.0738	NEUTRAL	NA	20	"BYSL,C6orf132,C6orf226,CCND3,CNPY3,GLTSCR1L,GUCA1A,GUCA1B,MED20,MRPS10,PRICKLE4,PRPH2,PTCRA,RPL7L1,TAF8,TBCC,TOMM6,TRERF1,UBR2,USP49"
TCGA.AF.3914.01A	6	41874759	42130616	27	-0.0489	NEUTRAL	NA	6	"BYSL,C6orf132,CCND3,GUCA1A,MED20,TAF8"
TCGA.AG.A014.01A	6	41874759	43474911	315	0.0322	NEUTRAL	NA	38	"ABCC10,BYSL,C6orf132,C6orf226,CCND3,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GUCA1A,GUCA1B,KLC4,KLHDC3,LRRC73,MEA1,MED20,MRPL2,MRPS10,PEX6,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,SLC22A7,SRF,TAF8,TBCC,TJAP1,TRERF1,TTBK1,UBR2,ZNF318"
TCGA.AG.3906.01A	6	41888650	42941701	135	0.0517	NEUTRAL	NA	19	"BYSL,C6orf132,C6orf226,CCND3,CNPY3,GLTSCR1L,GNMT,GUCA1A,GUCA1B,MED20,MRPS10,PEX6,PRPH2,PTCRA,RPL7L1,TAF8,TBCC,TRERF1,UBR2"
TCGA.AA.A010.01A	6	41908624	42096363	15	-0.0144	NEUTRAL	NA	3	"C6orf132,CCND3,TAF8"
TCGA.AG.A01W.01A	6	41982800	42820703	117	-0.0604	NEUTRAL	NA	11	"C6orf132,CCND3,GLTSCR1L,GUCA1A,GUCA1B,MRPS10,PRPH2,TAF8,TBCC,TRERF1,UBR2"
TCGA.AG.4009.01A	6	42034052	42045181	4	-0.223	NEUTRAL	NA	1	TAF8
TCGA.AG.A00C.01A	6	42145969	42185494	13	-0.1901	NEUTRAL	NA	3	"GUCA1A,GUCA1B,MRPS10"
TCGA.CM.5348	6	42159131	42439053	85	0.1943	NEUTRAL	NA	3	"GUCA1B,MRPS10,TRERF1"
TCGA.AA.A00Q.01A	6	42196051	42532030	14	-0.514	NEUTRAL	NA	2	"TRERF1,UBR2"
TCGA.AG.A00C.01A	6	42196051	42559872	16	0.2847	NEUTRAL	NA	2	"TRERF1,UBR2"
TCGA.CK.5914.01A	6	42227075	42615796	25	0.213	NEUTRAL	NA	2	"TRERF1,UBR2"
TCGA.AA.3685	6	42345561	44705302	634	0.339	NEUTRAL	NA	52	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TBCC,TCTE1,TJAP1,TMEM151B,TMEM63B,TRERF1,TTBK1,UBR2,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.DY.A1DF	6	42369307	45274020	734	0.3148	NEUTRAL	NA	53	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TBCC,TCTE1,TJAP1,TMEM151B,TMEM63B,TRERF1,TTBK1,UBR2,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A010.01A	6	42541465	42617975	20	0.2333	NEUTRAL	NA	1	UBR2
TCGA.AG.4009.01A	6	42541465	42641496	33	-0.1653	NEUTRAL	NA	1	UBR2
TCGA.AF.3914.01A	6	42541465	43008616	119	0.0924	NEUTRAL	NA	15	"C6orf226,CNPY3,CUL7,GLTSCR1L,GNMT,KLHDC3,MEA1,PEX6,PPP2R5D,PRPH2,PTCRA,RPL7L1,RRP36,TBCC,UBR2"
TCGA.AA.A00Q.01A	6	42541465	43474911	272	-0.12	NEUTRAL	NA	29	"ABCC10,C6orf226,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,KLC4,KLHDC3,LRRC73,MEA1,MRPL2,PEX6,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,SLC22A7,SRF,TBCC,TJAP1,TTBK1,UBR2,ZNF318"
TCGA.AG.A00C.01A	6	42561879	42647410	36	-0.0351	NEUTRAL	NA	1	UBR2
TCGA.AA.A010.01A	6	42619709	42638354	12	-0.4205	NEUTRAL	NA	1	UBR2
TCGA.CK.5914.01A	6	42633100	42638354	4	0.221	NEUTRAL	NA	1	UBR2
TCGA.AA.3509.01A	6	42638354	42853946	33	-0.4888	NEUTRAL	NA	5	"GLTSCR1L,PRPH2,RPL7L1,TBCC,UBR2"
TCGA.AZ.4684.01A	6	42638354	42853946	33	-0.3033	NEUTRAL	NA	5	"GLTSCR1L,PRPH2,RPL7L1,TBCC,UBR2"
TCGA.CK.5914.01A	6	42641496	43155413	150	-0.1633	NEUTRAL	NA	20	"C6orf226,CNPY3,CUL7,CUL9,GLTSCR1L,GNMT,KLC4,KLHDC3,MEA1,MRPL2,PEX6,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,SRF,TBCC,UBR2"
TCGA.AA.A02H.01A	6	42641496	44360357	407	-0.3445	NEUTRAL	NA	51	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TBCC,TCTE1,TJAP1,TMEM151B,TMEM63B,TTBK1,UBR2,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A02E.01A	6	42650725	44310784	396	-0.0314	NEUTRAL	NA	50	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TBCC,TCTE1,TJAP1,TMEM151B,TMEM63B,TTBK1,UBR2,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AG.A00C.01A	6	42665981	42883735	23	0.0516	NEUTRAL	NA	6	"C6orf226,GLTSCR1L,PRPH2,PTCRA,RPL7L1,TBCC"
TCGA.AA.A00N.01A	6	42665981	42928464	33	-0.1633	NEUTRAL	NA	7	"C6orf226,CNPY3,GLTSCR1L,PRPH2,PTCRA,RPL7L1,TBCC"
TCGA.AG.4009.01A	6	42789680	42929909	28	0.2159	NEUTRAL	NA	6	"C6orf226,CNPY3,GLTSCR1L,GNMT,PTCRA,RPL7L1"
TCGA.AF.2693	6	42845690	42915919	12	-0.1535	NEUTRAL	NA	4	"C6orf226,CNPY3,PTCRA,RPL7L1"
TCGA.AG.3891.01A	6	42858204	42905469	8	0.1422	NEUTRAL	NA	3	"C6orf226,CNPY3,PTCRA"
TCGA.AA.3861.01A	6	42858204	44320412	395	0.1649	NEUTRAL	NA	45	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PTCRA,PTK7,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TCTE1,TJAP1,TMEM151B,TMEM63B,TTBK1,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.3509.01A	6	42858204	44376130	422	-0.0681	NEUTRAL	NA	46	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PTCRA,PTK7,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TCTE1,TJAP1,TMEM151B,TMEM63B,TTBK1,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AZ.4684.01A	6	42858204	44376130	422	0.0441	NEUTRAL	NA	46	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PTCRA,PTK7,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TCTE1,TJAP1,TMEM151B,TMEM63B,TTBK1,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A00L.01A	6	42883735	43099702	92	0.025	NEUTRAL	NA	12	"CNPY3,CUL7,GNMT,KLC4,KLHDC3,MEA1,MRPL2,PEX6,PPP2R5D,PTCRA,PTK7,RRP36"
TCGA.AG.A01W.01A	6	42897659	43014238	26	-0.4262	NEUTRAL	NA	8	"CNPY3,CUL7,GNMT,KLHDC3,MEA1,PEX6,PPP2R5D,RRP36"
TCGA.AA.A010.01A	6	42902161	42952328	21	0.3565	NEUTRAL	NA	4	"CNPY3,GNMT,PEX6,PPP2R5D"
TCGA.AA.A01Q.01A	6	42928464	42985218	32	-0.3688	NEUTRAL	NA	5	"GNMT,KLHDC3,MEA1,PEX6,PPP2R5D"
TCGA.AG.4009.01A	6	42930448	42996783	36	-0.4686	NEUTRAL	NA	6	"GNMT,KLHDC3,MEA1,PEX6,PPP2R5D,RRP36"
TCGA.AA.A01F.01A	6	42941701	107780154	2149	0.0964	NEUTRAL	NA	241	Too-Many
TCGA.AH.6549.01A	6	42957288	162394296	5509	0.2369	NEUTRAL	NA	497	Too-Many
TCGA.AG.A025.01A	6	42996783	43304916	120	-0.2057	NEUTRAL	NA	12	"CRIP3,CUL7,CUL9,DNPH1,KLC4,MRPL2,PTK7,RRP36,SLC22A7,SRF,TTBK1,ZNF318"
TCGA.AA.A00N.01A	6	43005418	43015879	13	-0.1667	NEUTRAL	NA	1	CUL7
TCGA.AG.4009.01A	6	43005418	43029000	25	0.0965	NEUTRAL	NA	3	"CUL7,KLC4,MRPL2"
TCGA.AG.3891.01A	6	43005418	43529935	202	0.2547	NEUTRAL	NA	18	"ABCC10,CRIP3,CUL7,CUL9,DLK2,DNPH1,KLC4,LRRC73,MRPL2,POLR1C,PTK7,SLC22A7,SRF,TJAP1,TTBK1,XPO5,YIPF3,ZNF318"
TCGA.AA.3967.01A	6	43005418	44115949	267	-0.0502	NEUTRAL	NA	27	"ABCC10,C6orf223,CRIP3,CUL7,CUL9,DLK2,DNPH1,GTPBP2,KLC4,LRRC73,MAD2L1BP,MRPL14,MRPL2,MRPS18A,POLH,POLR1C,PTK7,RSPH9,SLC22A7,SRF,TJAP1,TMEM63B,TTBK1,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A01Q.01A	6	43011159	43251218	106	-0.3384	NEUTRAL	NA	8	"CUL7,CUL9,DNPH1,KLC4,MRPL2,PTK7,SRF,TTBK1"
TCGA.A6.3808.01A	6	43018718	43164332	56	-0.0202	NEUTRAL	NA	6	"CUL7,CUL9,KLC4,MRPL2,PTK7,SRF"
TCGA.AG.A01W.01A	6	43037879	43050555	14	-0.0273	NEUTRAL	NA	2	"KLC4,PTK7"
TCGA.A6.6138	6	43071289	168347713	37435	0.0169	NEUTRAL	NA	508	Too-Many
TCGA.AG.3906.01A	6	43096664	43112911	10	0.039	NEUTRAL	NA	1	PTK7
TCGA.AG.A00C.01A	6	43096664	43112911	10	-0.2519	NEUTRAL	NA	1	PTK7
TCGA.AG.4009.01A	6	43096664	43114300	11	0.2614	NEUTRAL	NA	1	PTK7
TCGA.AF.3914.01A	6	43096664	43139384	15	0.2052	NEUTRAL	NA	2	"PTK7,SRF"
TCGA.AA.A00L.01A	6	43100177	43114300	7	0.3763	NEUTRAL	NA	1	PTK7
TCGA.AG.3909.01A	6	43114300	43139384	5	0.2342	NEUTRAL	NA	2	"PTK7,SRF"
TCGA.AG.A00C.01A	6	43114300	43251218	57	0.2633	NEUTRAL	NA	5	"CUL9,DNPH1,PTK7,SRF,TTBK1"
TCGA.AA.A00L.01A	6	43126503	43146524	8	-0.4959	NEUTRAL	NA	2	"PTK7,SRF"
TCGA.AA.A00L.01A	6	43146783	43581356	128	-0.1986	NEUTRAL	NA	15	"ABCC10,CRIP3,CUL9,DLK2,DNPH1,LRRC73,POLH,POLR1C,SLC22A7,SRF,TJAP1,TTBK1,XPO5,YIPF3,ZNF318"
TCGA.AG.A01W.01A	6	43147513	43236397	20	-0.2113	NEUTRAL	NA	4	"CUL9,DNPH1,SRF,TTBK1"
TCGA.AF.3914.01A	6	43152007	43156221	7	-0.0092	NEUTRAL	NA	1	CUL9
TCGA.AG.4009.01A	6	43152007	43180860	24	-0.1947	NEUTRAL	NA	1	CUL9
TCGA.AG.3909.01A	6	43155413	43160698	3	0.0118	NEUTRAL	NA	1	CUL9
TCGA.AA.A00D.01A	6	43156221	43188859	22	-0.4674	NEUTRAL	NA	1	CUL9
TCGA.AF.3914.01A	6	43160698	43183869	19	0.3266	NEUTRAL	NA	1	CUL9
TCGA.AA.A00N.01A	6	43166319	43188170	17	0.3257	NEUTRAL	NA	1	CUL9
TCGA.AG.3906.01A	6	43167630	43183869	14	0.1524	NEUTRAL	NA	1	CUL9
TCGA.AG.3909.01A	6	43188170	43269253	27	-0.1433	NEUTRAL	NA	4	"CUL9,DNPH1,SLC22A7,TTBK1"
TCGA.CK.5914.01A	6	43188170	43479857	80	0.0388	NEUTRAL	NA	11	"ABCC10,CRIP3,CUL9,DLK2,DNPH1,LRRC73,SLC22A7,TJAP1,TTBK1,YIPF3,ZNF318"
TCGA.AA.A00N.01A	6	43188859	43269253	28	-0.4278	NEUTRAL	NA	4	"CUL9,DNPH1,SLC22A7,TTBK1"
TCGA.AA.A00D.01A	6	43189372	43484468	79	-0.1533	NEUTRAL	NA	11	"ABCC10,CRIP3,CUL9,DLK2,DNPH1,LRRC73,SLC22A7,TJAP1,TTBK1,YIPF3,ZNF318"
TCGA.DM.A1HB	6	43209738	47131173	1245	0.0346	NEUTRAL	NA	44	"AARS2,ABCC10,ADGRF1,ADGRF5,ANKRD66,C6orf223,CAPN11,CDC5L,CLIC5,CRIP3,CYP39A1,DLK2,ENPP4,ENPP5,GTPBP2,HSP90AB1,LRRC73,MAD2L1BP,MEP1A,MRPL14,MRPS18A,NFKBIE,PLA2G7,POLH,POLR1C,RCAN2,RSPH9,RUNX2,SLC22A7,SLC25A27,SLC29A1,SLC35B2,SPATS1,SUPT3H,TCTE1,TDRD6,TJAP1,TMEM151B,TMEM63B,TTBK1,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A010.01A	6	43227221	43276458	19	-0.1944	NEUTRAL	NA	3	"CRIP3,SLC22A7,TTBK1"
TCGA.AG.3906.01A	6	43237331	43309800	20	0.0715	NEUTRAL	NA	4	"CRIP3,SLC22A7,TTBK1,ZNF318"
TCGA.AA.A01Q.01A	6	43252709	43324867	22	0.2252	NEUTRAL	NA	4	"CRIP3,SLC22A7,TTBK1,ZNF318"
TCGA.AG.A01W.01A	6	43254762	43301981	36	-0.2419	NEUTRAL	NA	3	"CRIP3,SLC22A7,TTBK1"
TCGA.AF.3914.01A	6	43266055	43276004	11	0.1317	NEUTRAL	NA	2	"CRIP3,SLC22A7"
TCGA.AG.4009.01A	6	43266055	43320067	19	-0.2042	NEUTRAL	NA	3	"CRIP3,SLC22A7,ZNF318"
TCGA.AG.A00C.01A	6	43266055	43410667	31	-0.0522	NEUTRAL	NA	4	"ABCC10,CRIP3,SLC22A7,ZNF318"
TCGA.AA.A00N.01A	6	43269899	43310386	13	0.1896	NEUTRAL	NA	3	"CRIP3,SLC22A7,ZNF318"
TCGA.AG.3906.01A	6	43310386	43521063	72	0.3784	NEUTRAL	NA	8	"ABCC10,DLK2,LRRC73,POLR1C,TJAP1,XPO5,YIPF3,ZNF318"
TCGA.AA.A00N.01A	6	43316042	43479857	40	-0.4789	NEUTRAL	NA	6	"ABCC10,DLK2,LRRC73,TJAP1,YIPF3,ZNF318"
TCGA.AG.A025.01A	6	43316042	43745165	119	-0.1965	NEUTRAL	NA	14	"ABCC10,DLK2,GTPBP2,LRRC73,MAD2L1BP,MRPS18A,POLH,POLR1C,RSPH9,TJAP1,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AF.3914.01A	6	43316042	44104044	134	-0.2414	NEUTRAL	NA	17	"ABCC10,C6orf223,DLK2,GTPBP2,LRRC73,MAD2L1BP,MRPL14,MRPS18A,POLH,POLR1C,RSPH9,TJAP1,TMEM63B,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AG.3909.01A	6	43320067	43410667	13	-0.2261	NEUTRAL	NA	2	"ABCC10,ZNF318"
TCGA.AA.A01Q.01A	6	43332978	43550722	49	-0.3695	NEUTRAL	NA	9	"ABCC10,DLK2,LRRC73,POLH,POLR1C,TJAP1,XPO5,YIPF3,ZNF318"
TCGA.AG.A01W.01A	6	43358415	43705395	121	-0.0921	NEUTRAL	NA	12	"ABCC10,DLK2,GTPBP2,LRRC73,MAD2L1BP,MRPS18A,POLH,POLR1C,RSPH9,TJAP1,XPO5,YIPF3"
TCGA.AA.A010.01A	6	43395562	43484468	41	-0.3352	NEUTRAL	NA	5	"ABCC10,DLK2,LRRC73,TJAP1,YIPF3"
TCGA.A6.3808.01A	6	43417128	44344047	211	-0.2988	NEUTRAL	NA	25	"AARS2,ABCC10,C6orf223,CAPN11,DLK2,GTPBP2,HSP90AB1,LRRC73,MAD2L1BP,MRPL14,MRPS18A,NFKBIE,POLH,POLR1C,RSPH9,SLC29A1,SLC35B2,SPATS1,TCTE1,TJAP1,TMEM151B,TMEM63B,VEGFA,XPO5,YIPF3"
TCGA.AA.A00Q.01A	6	43476005	43572923	24	0.2396	NEUTRAL	NA	5	"LRRC73,POLH,POLR1C,XPO5,YIPF3"
TCGA.AG.A014.01A	6	43480817	46991751	307	0.0108	NEUTRAL	NA	36	"AARS2,ADGRF1,ADGRF5,ANKRD66,C6orf223,CAPN11,CDC5L,CLIC5,CYP39A1,ENPP4,ENPP5,GTPBP2,HSP90AB1,MAD2L1BP,MEP1A,MRPL14,MRPS18A,NFKBIE,PLA2G7,POLH,POLR1C,RCAN2,RSPH9,RUNX2,SLC25A27,SLC29A1,SLC35B2,SPATS1,SUPT3H,TCTE1,TDRD6,TMEM151B,TMEM63B,VEGFA,XPO5,YIPF3"
TCGA.AA.A00D.01A	6	43487043	43572923	15	0.3352	NEUTRAL	NA	3	"POLH,POLR1C,XPO5"
TCGA.CK.5914.01A	6	43514261	43533339	13	0.2167	NEUTRAL	NA	1	XPO5
TCGA.AA.A01Q.01A	6	43554997	43623260	24	0.0551	NEUTRAL	NA	4	"GTPBP2,MAD2L1BP,POLH,RSPH9"
TCGA.AG.3906.01A	6	43565391	43612794	20	0.3775	NEUTRAL	NA	4	"GTPBP2,MAD2L1BP,POLH,RSPH9"
TCGA.AG.3891.01A	6	43565391	44115949	53	0.2286	NEUTRAL	NA	9	"C6orf223,GTPBP2,MAD2L1BP,MRPL14,MRPS18A,POLH,RSPH9,TMEM63B,VEGFA"
TCGA.CK.5914.01A	6	43565391	44126493	68	0.0946	NEUTRAL	NA	9	"C6orf223,GTPBP2,MAD2L1BP,MRPL14,MRPS18A,POLH,RSPH9,TMEM63B,VEGFA"
TCGA.AG.3909.01A	6	43565391	44137006	63	-0.1483	NEUTRAL	NA	10	"C6orf223,CAPN11,GTPBP2,MAD2L1BP,MRPL14,MRPS18A,POLH,RSPH9,TMEM63B,VEGFA"
TCGA.AA.A00Q.01A	6	43578259	44115077	49	-0.14	NEUTRAL	NA	9	"C6orf223,GTPBP2,MAD2L1BP,MRPL14,MRPS18A,POLH,RSPH9,TMEM63B,VEGFA"
TCGA.AA.A00D.01A	6	43578259	44344689	118	-0.1126	NEUTRAL	NA	18	"AARS2,C6orf223,CAPN11,GTPBP2,HSP90AB1,MAD2L1BP,MRPL14,MRPS18A,NFKBIE,POLH,RSPH9,SLC29A1,SLC35B2,SPATS1,TCTE1,TMEM151B,TMEM63B,VEGFA"
TCGA.AA.A010.01A	6	43590321	43738471	26	0.278	NEUTRAL	NA	5	"GTPBP2,MAD2L1BP,MRPS18A,RSPH9,VEGFA"
TCGA.AA.A00L.01A	6	43594586	49426798	296	-0.1132	NEUTRAL	NA	39	"AARS2,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf223,CAPN11,CD2AP,CDC5L,CLIC5,CYP39A1,ENPP4,ENPP5,GTPBP2,HSP90AB1,MAD2L1BP,MEP1A,MRPL14,MRPS18A,MUT,NFKBIE,OPN5,PLA2G7,PTCHD4,RCAN2,RSPH9,RUNX2,SLC25A27,SLC29A1,SLC35B2,SPATS1,SUPT3H,TCTE1,TDRD6,TMEM151B,TMEM63B,TNFRSF21,VEGFA"
TCGA.AG.4009.01A	6	43607770	43648745	10	0.1186	NEUTRAL	NA	3	"MAD2L1BP,MRPS18A,RSPH9"
TCGA.AA.A00N.01A	6	43607770	43655356	13	0.3592	NEUTRAL	NA	3	"MAD2L1BP,MRPS18A,RSPH9"
TCGA.AG.A00C.01A	6	43607770	43655356	11	-0.0893	NEUTRAL	NA	3	"MAD2L1BP,MRPS18A,RSPH9"
TCGA.AG.3906.01A	6	43618074	43742017	11	-0.0447	NEUTRAL	NA	3	"MRPS18A,RSPH9,VEGFA"
TCGA.AA.A01Q.01A	6	43624267	43742017	9	-0.4143	NEUTRAL	NA	3	"MRPS18A,RSPH9,VEGFA"
TCGA.AG.A01W.01A	6	43726040	44184252	22	-0.0439	NEUTRAL	NA	5	"C6orf223,CAPN11,MRPL14,TMEM63B,VEGFA"
TCGA.AG.A00C.01A	6	43742017	44122390	31	0.3476	NEUTRAL	NA	4	"C6orf223,MRPL14,TMEM63B,VEGFA"
TCGA.AG.3906.01A	6	43745165	44121396	27	0.3399	NEUTRAL	NA	4	"C6orf223,MRPL14,TMEM63B,VEGFA"
TCGA.AA.A010.01A	6	43968306	44117579	18	0.0319	NEUTRAL	NA	3	"C6orf223,MRPL14,TMEM63B"
TCGA.AA.A01Q.01A	6	43970409	44117579	15	-0.2402	NEUTRAL	NA	3	"C6orf223,MRPL14,TMEM63B"
TCGA.AG.4009.01A	6	43970409	44151382	39	0.0321	NEUTRAL	NA	4	"C6orf223,CAPN11,MRPL14,TMEM63B"
TCGA.AG.A016.01A	6	44081550	44115949	13	-0.1362	NEUTRAL	NA	2	"MRPL14,TMEM63B"
TCGA.AG.A015.01A	6	44081550	44117579	14	-0.2905	NEUTRAL	NA	2	"MRPL14,TMEM63B"
TCGA.AA.3967.01A	6	44117579	44194979	26	-0.4949	NEUTRAL	NA	3	"CAPN11,SLC29A1,TMEM63B"
TCGA.AG.3891.01A	6	44117579	44197626	28	-0.0203	NEUTRAL	NA	3	"CAPN11,SLC29A1,TMEM63B"
TCGA.AG.A015.01A	6	44117948	52267970	430	0.3054	NEUTRAL	NA	52	"AARS2,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CAPN11,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,ENPP4,ENPP5,GLYATL3,HSP90AB1,IL17A,IL17F,MCM3,MEP1A,MUT,NFKBIE,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SLC29A1,SLC35B2,SPATS1,SUPT3H,TCTE1,TDRD6,TFAP2B,TFAP2D,TMEM151B,TMEM63B,TNFRSF21"
TCGA.AA.A017.01A	6	44119535	52109112	404	0.1367	NEUTRAL	NA	50	"AARS2,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CAPN11,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,ENPP4,ENPP5,GLYATL3,HSP90AB1,IL17A,IL17F,MEP1A,MUT,NFKBIE,OPN5,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SLC29A1,SLC35B2,SPATS1,SUPT3H,TCTE1,TDRD6,TFAP2B,TFAP2D,TMEM151B,TMEM63B,TNFRSF21"
TCGA.AG.3906.01A	6	44121763	44194979	20	-0.1612	NEUTRAL	NA	3	"CAPN11,SLC29A1,TMEM63B"
TCGA.AA.A00F.01A	6	44134434	44147652	4	-0.1181	NEUTRAL	NA	1	CAPN11
TCGA.AA.A01Q.01A	6	44137006	44151382	12	0.2337	NEUTRAL	NA	1	CAPN11
TCGA.AG.A00C.01A	6	44137006	44151382	16	-0.3476	NEUTRAL	NA	1	CAPN11
TCGA.AG.A016.01A	6	44143770	44194979	12	0.1086	NEUTRAL	NA	2	"CAPN11,SLC29A1"
TCGA.AA.A010.01A	6	44147264	44151382	7	0.0878	NEUTRAL	NA	1	CAPN11
TCGA.CM.5341	6	44171483	44551486	142	-0.1486	NEUTRAL	NA	9	"AARS2,CDC5L,HSP90AB1,NFKBIE,SLC29A1,SLC35B2,SPATS1,TCTE1,TMEM151B"
TCGA.AA.A00Q.01A	6	44194979	44320412	51	-0.2456	NEUTRAL	NA	8	"AARS2,HSP90AB1,NFKBIE,SLC29A1,SLC35B2,SPATS1,TCTE1,TMEM151B"
TCGA.AG.A025.01A	6	44194979	44390342	66	-0.4388	NEUTRAL	NA	9	"AARS2,CDC5L,HSP90AB1,NFKBIE,SLC29A1,SLC35B2,SPATS1,TCTE1,TMEM151B"
TCGA.AG.3906.01A	6	44197081	44216319	9	0.3441	NEUTRAL	NA	2	"HSP90AB1,SLC29A1"
TCGA.AA.3967.01A	6	44197081	44371534	62	0.091	NEUTRAL	NA	9	"AARS2,CDC5L,HSP90AB1,NFKBIE,SLC29A1,SLC35B2,SPATS1,TCTE1,TMEM151B"
TCGA.CM.6165.01A	6	44200503	44221196	11	-0.3886	NEUTRAL	NA	2	"HSP90AB1,SLC29A1"
TCGA.AF.2693	6	44211866	44245322	9	0.3243	NEUTRAL	NA	4	"HSP90AB1,NFKBIE,SLC35B2,TMEM151B"
TCGA.AG.A00C.01A	6	44220771	44279822	31	0.3402	NEUTRAL	NA	6	"AARS2,HSP90AB1,NFKBIE,SLC35B2,TCTE1,TMEM151B"
TCGA.AG.A00H.01A	6	44220771	170892551	5065	0.1187	NEUTRAL	NA	498	Too-Many
TCGA.CM.6165.01A	6	44222445	74078917	1095	0.11	NEUTRAL	NA	101	Too-Many
TCGA.AG.A01W.01A	6	44225544	44327092	40	-0.0093	NEUTRAL	NA	6	"AARS2,NFKBIE,SLC35B2,SPATS1,TCTE1,TMEM151B"
TCGA.CK.5914.01A	6	44227752	44374008	44	-0.067	NEUTRAL	NA	6	"AARS2,CDC5L,NFKBIE,SPATS1,TCTE1,TMEM151B"
TCGA.AA.A01Q.01A	6	44229316	44274632	21	-0.2878	NEUTRAL	NA	4	"AARS2,NFKBIE,TCTE1,TMEM151B"
TCGA.AA.A00F.01A	6	44229316	44374008	39	0.377	NEUTRAL	NA	6	"AARS2,CDC5L,NFKBIE,SPATS1,TCTE1,TMEM151B"
TCGA.AA.A00N.01A	6	44229316	44374008	42	-0.4522	NEUTRAL	NA	6	"AARS2,CDC5L,NFKBIE,SPATS1,TCTE1,TMEM151B"
TCGA.AF.2693	6	44246765	67519272	5522	0.0284	NEUTRAL	NA	83	"AARS2,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,BAG2,BEND6,BMP5,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,COL21A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,EYS,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KHDRBS2,KIAA1586,KLHL31,LGSN,LOC441155,LRRC1,MCM3,MEP1A,MLIP,MTRNR2L9,MUT,OPN5,PAQR8,PGK2,PHF3,PKHD1,PLA2G7,PRIM2,PTCHD4,PTP4A1,RAB23,RCAN2,RHAG,RUNX2,SLC25A27,SPATS1,SUPT3H,TCTE1,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TMEM151B,TNFRSF21,TRAM2,ZNF451"
TCGA.AF.3914.01A	6	44249799	57190676	728	0.2335	NEUTRAL	NA	75	"AARS2,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,BAG2,BEND6,BMP5,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,COL21A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MEP1A,MLIP,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PRIM2,PTCHD4,RAB23,RCAN2,RHAG,RUNX2,SLC25A27,SPATS1,SUPT3H,TCTE1,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AG.3891.01A	6	44253693	44329518	24	-0.0056	NEUTRAL	NA	3	"AARS2,SPATS1,TCTE1"
TCGA.AA.A010.01A	6	44268236	44279822	17	-0.235	NEUTRAL	NA	1	AARS2
TCGA.AG.4009.01A	6	44268236	45073600	50	0.0075	NEUTRAL	NA	4	"AARS2,CDC5L,SPATS1,SUPT3H"
TCGA.AG.3906.01A	6	44268236	46637847	96	-0.0832	NEUTRAL	NA	11	"AARS2,CDC5L,CLIC5,CYP39A1,ENPP4,ENPP5,RCAN2,RUNX2,SLC25A27,SPATS1,SUPT3H"
TCGA.AG.A016.01A	6	44270488	44280816	14	-0.0445	NEUTRAL	NA	1	AARS2
TCGA.AA.A01Q.01A	6	44274949	45459636	48	0.0685	NEUTRAL	NA	5	"AARS2,CDC5L,RUNX2,SPATS1,SUPT3H"
TCGA.AG.A00C.01A	6	44280816	46598650	67	-0.0919	NEUTRAL	NA	10	"AARS2,CDC5L,CLIC5,CYP39A1,ENPP4,ENPP5,RCAN2,RUNX2,SPATS1,SUPT3H"
TCGA.AG.A016.01A	6	44310784	51918784	315	0.3013	NEUTRAL	NA	39	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,ENPP4,ENPP5,GLYATL3,MEP1A,MUT,OPN5,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SPATS1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TNFRSF21"
TCGA.AA.A00Q.01A	6	44328132	52103486	322	0.0754	NEUTRAL	NA	41	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,ENPP4,ENPP5,GLYATL3,IL17A,IL17F,MEP1A,MUT,OPN5,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SPATS1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TNFRSF21"
TCGA.AA.3861.01A	6	44328132	65302963	800	-0.1827	NEUTRAL	NA	79	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,BAG2,BEND6,BMP5,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,COL21A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,EYS,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KHDRBS2,KIAA1586,KLHL31,LGSN,LRRC1,MCM3,MEP1A,MLIP,MTRNR2L9,MUT,OPN5,PAQR8,PGK2,PHF3,PKHD1,PLA2G7,PRIM2,PTCHD4,PTP4A1,RAB23,RCAN2,RHAG,RUNX2,SLC25A27,SPATS1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AA.3862.01A	6	44328132	109414971	2389	-0.2141	NEUTRAL	NA	211	Too-Many
TCGA.AA.3982	6	44333488	46096882	582	0.2446	NEUTRAL	NA	5	"CDC5L,CLIC5,RUNX2,SPATS1,SUPT3H"
TCGA.AG.A01W.01A	6	44337310	44452668	35	-0.1961	NEUTRAL	NA	2	"CDC5L,SPATS1"
TCGA.DM.A1D7	6	44350715	46950610	875	0.3299	NEUTRAL	NA	14	"ADGRF5,ANKRD66,CDC5L,CLIC5,CYP39A1,ENPP4,ENPP5,MEP1A,PLA2G7,RCAN2,RUNX2,SLC25A27,SUPT3H,TDRD6"
TCGA.AG.3891.01A	6	44357967	44374008	6	0.1219	NEUTRAL	NA	1	CDC5L
TCGA.AG.A00Y.01A	6	44357967	52374277	370	-0.0212	NEUTRAL	NA	44	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,EFHC1,ENPP4,ENPP5,GLYATL3,IL17A,IL17F,MCM3,MEP1A,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2B,TFAP2D,TNFRSF21,TRAM2"
TCGA.AA.A01C.01A	6	44360357	50740311	247	0.2397	NEUTRAL	NA	36	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,ENPP4,ENPP5,GLYATL3,MEP1A,MUT,OPN5,PGK2,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2D,TNFRSF21"
TCGA.AA.A02H.01A	6	44361133	50740311	247	0.3009	NEUTRAL	NA	36	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,ENPP4,ENPP5,GLYATL3,MEP1A,MUT,OPN5,PGK2,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2D,TNFRSF21"
TCGA.AA.A01K.01A	6	44364031	90647831	1770	0.1944	NEUTRAL	NA	164	Too-Many
TCGA.AG.A01J.01A	6	44364031	165895719	4793	0.0677	NEUTRAL	NA	461	Too-Many
TCGA.AA.A00D.01A	6	44371534	80631312	994	-0.1393	NEUTRAL	NA	117	Too-Many
TCGA.AA.3967.01A	6	44374008	72086597	902	-0.3535	NEUTRAL	NA	88	"ADGRB3,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,B3GAT2,BAG2,BEND6,BMP5,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,COL19A1,COL21A1,COL9A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MCM3,MEP1A,MLIP,MTRNR2L9,MUT,OGFRL1,OPN5,PAQR8,PGK2,PHF3,PKHD1,PLA2G7,PRIM2,PTCHD4,PTP4A1,RAB23,RCAN2,RHAG,RUNX2,SDHAF4,SLC25A27,SMAP1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AA.A00F.01A	6	44376130	45290534	21	0.0156	NEUTRAL	NA	2	"CDC5L,SUPT3H"
TCGA.AG.3891.01A	6	44376130	73952089	969	-0.2234	NEUTRAL	NA	92	"ADGRB3,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,B3GAT2,BAG2,BEND6,BMP5,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,COL19A1,COL21A1,COL9A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KCNQ5,KHDC1,KHDC1L,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MCM3,MEP1A,MLIP,MTRNR2L9,MUT,OGFRL1,OPN5,PAQR8,PGK2,PHF3,PKHD1,PLA2G7,PRIM2,PTCHD4,PTP4A1,RAB23,RCAN2,RHAG,RIMS1,RUNX2,SDHAF4,SLC25A27,SMAP1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AG.3909.01A	6	44387134	45459636	26	0.2289	NEUTRAL	NA	3	"CDC5L,RUNX2,SUPT3H"
TCGA.AA.3509.01A	6	44387134	51938200	325	0.3301	NEUTRAL	NA	38	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,ENPP4,ENPP5,GLYATL3,MEP1A,MUT,OPN5,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2B,TFAP2D,TNFRSF21"
TCGA.AA.A010.01A	6	44390342	44414327	7	-0.1338	NEUTRAL	NA	1	CDC5L
TCGA.AG.A01N.01A	6	44392148	74104620	968	0.2272	NEUTRAL	NA	96	"ADGRB3,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,B3GAT2,BAG2,BEND6,BMP5,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,COL19A1,COL21A1,COL9A1,CRISP1,CRISP2,CRISP3,CYP39A1,DDX43,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DPPA5,DST,EFHC1,ELOVL5,ENPP4,ENPP5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MCM3,MEP1A,MLIP,MTRNR2L9,MUT,OGFRL1,OOEP,OPN5,PAQR8,PGK2,PHF3,PKHD1,PLA2G7,PRIM2,PTCHD4,PTP4A1,RAB23,RCAN2,RHAG,RIMS1,RUNX2,SDHAF4,SLC25A27,SMAP1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AA.A029.01A	6	44392148	142721575	3617	-0.0607	NEUTRAL	NA	363	Too-Many
TCGA.AG.A025.01A	6	44392148	170892551	5082	0.0069	NEUTRAL	NA	491	Too-Many
TCGA.AG.A01W.01A	6	44463463	45096216	32	0.1132	NEUTRAL	NA	1	SUPT3H
TCGA.CM.5341	6	44572154	46047268	474	-0.2154	NEUTRAL	NA	3	"CLIC5,RUNX2,SUPT3H"
TCGA.A6.2672	6	44659585	57295190	3830	0.2341	NEUTRAL	NA	71	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,BAG2,BEND6,BMP5,C6orf141,CD2AP,CENPQ,CLIC5,COL21A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MEP1A,MLIP,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PRIM2,PTCHD4,RAB23,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AA.3685	6	44710303	44885287	40	-0.0704	NEUTRAL	NA	1	SUPT3H
TCGA.AA.3850	6	44710303	45940527	350	-0.05795	NEUTRAL	NA	3	"CLIC5,RUNX2,SUPT3H"
TCGA.AA.3941	6	44745525	46151385	430	-0.5064	NEUTRAL	NA	5	"CLIC5,ENPP4,ENPP5,RUNX2,SUPT3H"
TCGA.CM.5348	6	44796595	163035503	34675	0	NEUTRAL	NA	456	Too-Many
TCGA.AA.3685	6	44898769	45098200	45	0.3473	NEUTRAL	NA	1	SUPT3H
TCGA.A6.6780	6	44925292	147847717	28833	-0.01	NEUTRAL	NA	382	Too-Many
TCGA.AA.A010.01A	6	44971362	45332901	10	-0.2871	NEUTRAL	NA	2	"RUNX2,SUPT3H"
TCGA.AA.3685	6	45102549	47166182	734	0.0002	NEUTRAL	NA	14	"ADGRF1,ADGRF5,ANKRD66,CLIC5,CYP39A1,ENPP4,ENPP5,MEP1A,PLA2G7,RCAN2,RUNX2,SLC25A27,SUPT3H,TDRD6"
TCGA.DM.A1D9	6	45198795	58432573	3833	0.0057	NEUTRAL	NA	71	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,BAG2,BEND6,BMP5,C6orf141,CD2AP,CENPQ,CLIC5,COL21A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MEP1A,MLIP,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PRIM2,PTCHD4,RAB23,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AG.4009.01A	6	45289489	45405632	8	-0.4818	NEUTRAL	NA	2	"RUNX2,SUPT3H"
TCGA.DY.A1DF	6	45290633	58724748	3867	-0.4267	NEUTRAL	NA	71	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,BAG2,BEND6,BMP5,C6orf141,CD2AP,CENPQ,CLIC5,COL21A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MEP1A,MLIP,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PRIM2,PTCHD4,RAB23,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AG.A01W.01A	6	45440870	46752014	47	0.1181	NEUTRAL	NA	10	"ANKRD66,CLIC5,CYP39A1,ENPP4,ENPP5,PLA2G7,RCAN2,RUNX2,SLC25A27,TDRD6"
TCGA.AA.A00F.01A	6	45459636	45922831	9	-0.1586	NEUTRAL	NA	2	"CLIC5,RUNX2"
TCGA.AA.A010.01A	6	45459636	46630076	37	0.0593	NEUTRAL	NA	7	"CLIC5,CYP39A1,ENPP4,ENPP5,RCAN2,RUNX2,SLC25A27"
TCGA.AG.4009.01A	6	45459636	46630076	33	-0.0639	NEUTRAL	NA	7	"CLIC5,CYP39A1,ENPP4,ENPP5,RCAN2,RUNX2,SLC25A27"
TCGA.DC.4745	6	45537674	57250387	3644	0.0447	NEUTRAL	NA	69	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,BAG2,BEND6,BMP5,C6orf141,CD2AP,CENPQ,CLIC5,COL21A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MEP1A,MLIP,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PRIM2,PTCHD4,RAB23,RCAN2,RHAG,SLC25A27,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AG.4015	6	45806447	170918030	37541	0.0178	NEUTRAL	NA	488	Too-Many
TCGA.AA.A01Q.01A	6	45909242	46974909	73	0.022	NEUTRAL	NA	12	"ADGRF1,ADGRF5,ANKRD66,CLIC5,CYP39A1,ENPP4,ENPP5,MEP1A,PLA2G7,RCAN2,SLC25A27,TDRD6"
TCGA.CI.6621	6	46082809	170918030	37452	-0.043	NEUTRAL	NA	487	Too-Many
TCGA.AA.A00N.01A	6	46107290	46135164	6	-0.3123	NEUTRAL	NA	2	"ENPP4,ENPP5"
TCGA.AG.3909.01A	6	46107290	46135164	6	-0.1974	NEUTRAL	NA	2	"ENPP4,ENPP5"
TCGA.AA.3982	6	46116331	46151385	16	-0.2831	NEUTRAL	NA	1	ENPP5
TCGA.AA.3979	6	46127625	114050657	18505	-0.0023	NEUTRAL	NA	234	Too-Many
TCGA.AA.3941	6	46158052	47767959	579	-0.4412	NEUTRAL	NA	14	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,CD2AP,CYP39A1,MEP1A,OPN5,PLA2G7,RCAN2,SLC25A27,TDRD6,TNFRSF21"
TCGA.AA.3844	6	46158052	47774596	583	-0.0811	NEUTRAL	NA	14	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,CD2AP,CYP39A1,MEP1A,OPN5,PLA2G7,RCAN2,SLC25A27,TDRD6,TNFRSF21"
TCGA.AA.3982	6	46158052	47774596	583	0.1799	NEUTRAL	NA	14	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,CD2AP,CYP39A1,MEP1A,OPN5,PLA2G7,RCAN2,SLC25A27,TDRD6,TNFRSF21"
TCGA.AA.3530	6	46158052	154265747	30984	-0.0693	NEUTRAL	NA	411	Too-Many
TCGA.AG.3909.01A	6	46190827	46598650	11	0.3675	NEUTRAL	NA	2	"CYP39A1,RCAN2"
TCGA.AA.3850	6	46281391	47732177	532	-0.09035	NEUTRAL	NA	13	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,CD2AP,CYP39A1,MEP1A,PLA2G7,RCAN2,SLC25A27,TDRD6,TNFRSF21"
TCGA.G4.6299	6	46466664	151789354	30031	0.3409	NEUTRAL	NA	402	Too-Many
TCGA.CM.5341	6	46490158	47677885	445	-0.176	NEUTRAL	NA	12	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,CD2AP,CYP39A1,MEP1A,PLA2G7,SLC25A27,TDRD6,TNFRSF21"
TCGA.AA.A00F.01A	6	46518041	46554761	3	-0.1417	NEUTRAL	NA	1	CYP39A1
TCGA.AA.A00O.01A	6	46518041	47253653	85	0.3314	NEUTRAL	NA	9	"ADGRF1,ADGRF5,ANKRD66,CYP39A1,MEP1A,PLA2G7,SLC25A27,TDRD6,TNFRSF21"
TCGA.AA.A004.01A	6	46521446	46682152	32	0.1211	NEUTRAL	NA	4	"CYP39A1,PLA2G7,SLC25A27,TDRD6"
TCGA.CK.5914.01A	6	46604076	46675677	23	-0.2293	NEUTRAL	NA	4	"CYP39A1,PLA2G7,SLC25A27,TDRD6"
TCGA.AG.A00C.01A	6	46604076	46766317	32	0.301	NEUTRAL	NA	6	"ANKRD66,CYP39A1,MEP1A,PLA2G7,SLC25A27,TDRD6"
TCGA.AG.3906.01A	6	46638821	46684660	17	0.2823	NEUTRAL	NA	3	"PLA2G7,SLC25A27,TDRD6"
TCGA.AZ.4616	6	46642874	168083683	36170	-0.1094	NEUTRAL	NA	466	Too-Many
TCGA.AG.3909.01A	6	46669545	46766317	15	-0.3868	NEUTRAL	NA	4	"ANKRD66,MEP1A,PLA2G7,TDRD6"
TCGA.AG.4009.01A	6	46682152	50740311	167	-0.0762	NEUTRAL	NA	26	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,MEP1A,MUT,OPN5,PGK2,PLA2G7,PTCHD4,RHAG,TFAP2D,TNFRSF21"
TCGA.AA.A010.01A	6	46690478	46792980	11	-0.4092	NEUTRAL	NA	3	"ANKRD66,MEP1A,PLA2G7"
TCGA.AG.3906.01A	6	46690478	46825869	17	-0.1221	NEUTRAL	NA	4	"ADGRF5,ANKRD66,MEP1A,PLA2G7"
TCGA.AA.A00F.01A	6	46766317	46806675	11	0.0222	NEUTRAL	NA	1	MEP1A
TCGA.AG.A00C.01A	6	46766801	52137057	250	-0.1399	NEUTRAL	NA	29	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,C6orf141,CD2AP,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,IL17A,IL17F,MCM3,MEP1A,MUT,OPN5,PGK2,PKHD1,PTCHD4,RHAG,TFAP2B,TFAP2D,TNFRSF21"
TCGA.AG.A01W.01A	6	46771471	47757009	92	0.1238	NEUTRAL	NA	8	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,CD2AP,MEP1A,OPN5,TNFRSF21"
TCGA.AA.A010.01A	6	46794054	52103486	252	0.0135	NEUTRAL	NA	28	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,C6orf141,CD2AP,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,IL17A,IL17F,MEP1A,MUT,OPN5,PGK2,PKHD1,PTCHD4,RHAG,TFAP2B,TFAP2D,TNFRSF21"
TCGA.AG.3906.01A	6	46828424	47470978	35	0.194	NEUTRAL	NA	4	"ADGRF1,ADGRF5,CD2AP,TNFRSF21"
TCGA.AA.A00F.01A	6	46839529	49426798	81	0.0639	NEUTRAL	NA	9	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,CD2AP,MUT,OPN5,PTCHD4,TNFRSF21"
TCGA.DM.A1D7	6	46951247	110504679	17230	-0.093	NEUTRAL	NA	208	Too-Many
TCGA.AA.A01Q.01A	6	46976630	47544213	23	0.3428	NEUTRAL	NA	3	"ADGRF1,CD2AP,TNFRSF21"
TCGA.AG.A014.01A	6	46993539	168351838	4795	-0.2218	NEUTRAL	NA	461	Too-Many
TCGA.DM.A1HB	6	47145371	106326029	15570	-0.0388	NEUTRAL	NA	177	Too-Many
TCGA.AA.A00O.01A	6	47470978	69348516	606	-0.4015	NEUTRAL	NA	64	"ADGRB3,ADGRF2,ADGRF4,BAG2,BEND6,BMP5,C6orf141,CD2AP,CENPQ,COL21A1,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,EYS,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KHDRBS2,KIAA1586,KLHL31,LGSN,LOC441155,LRRC1,MCM3,MLIP,MTRNR2L9,MUT,OPN5,PAQR8,PGK2,PHF3,PKHD1,PRIM2,PTCHD4,PTP4A1,RAB23,RHAG,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.AG.3906.01A	6	47501321	47649534	23	-0.132	NEUTRAL	NA	2	"ADGRF2,CD2AP"
TCGA.AA.A01Q.01A	6	47544696	91296446	1349	0.0633	NEUTRAL	NA	149	Too-Many
TCGA.AA.3685	6	47646841	47744322	63	-0.0919	NEUTRAL	NA	2	"ADGRF2,ADGRF4"
TCGA.AA.A004.01A	6	47648989	52705469	236	-0.0564	NEUTRAL	NA	31	"ADGRF2,ADGRF4,C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,EFHC1,GLYATL3,GSTA1,GSTA2,GSTA5,IL17A,IL17F,MCM3,MUT,OPN5,PAQR8,PGK2,PKHD1,PTCHD4,RHAG,TFAP2B,TFAP2D,TMEM14A,TRAM2"
TCGA.AG.3906.01A	6	47654650	47779360	17	0.1798	NEUTRAL	NA	3	"ADGRF2,ADGRF4,OPN5"
TCGA.CM.5341	6	47725813	170918030	36932	0.0031	NEUTRAL	NA	472	Too-Many
TCGA.AA.3685	6	47746443	47780080	17	0.3699	NEUTRAL	NA	1	OPN5
TCGA.AG.A01W.01A	6	47762639	47794024	10	-0.334	NEUTRAL	NA	1	OPN5
TCGA.AA.3811	6	47774596	51968177	1113	-0.2986	NEUTRAL	NA	19	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,MUT,OPN5,PGK2,PKHD1,PTCHD4,RHAG,TFAP2B,TFAP2D"
TCGA.AA.3982	6	47780080	51801449	1063	-0.3187	NEUTRAL	NA	19	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,MUT,OPN5,PGK2,PKHD1,PTCHD4,RHAG,TFAP2B,TFAP2D"
TCGA.AA.3844	6	47780080	52004362	1125	-0.507	NEUTRAL	NA	19	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,MUT,OPN5,PGK2,PKHD1,PTCHD4,RHAG,TFAP2B,TFAP2D"
TCGA.AA.3685	6	47797786	48156100	88	-0.168	NEUTRAL	NA	1	PTCHD4
TCGA.AG.3906.01A	6	47846011	73952089	788	-0.0822	NEUTRAL	NA	72	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,C6orf141,CENPQ,COL19A1,COL21A1,COL9A1,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KCNQ5,KHDC1,KHDC1L,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MCM3,MLIP,MTRNR2L9,MUT,OGFRL1,PAQR8,PGK2,PHF3,PKHD1,PRIM2,PTCHD4,PTP4A1,RAB23,RHAG,RIMS1,SDHAF4,SMAP1,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.AG.A01W.01A	6	47857711	52462858	206	0.1909	NEUTRAL	NA	24	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,EFHC1,GLYATL3,IL17A,IL17F,MCM3,MUT,PAQR8,PGK2,PKHD1,PTCHD4,RHAG,TFAP2B,TFAP2D,TRAM2"
TCGA.AA.3685	6	48156736	48519266	90	0.2893	NEUTRAL	NA	0	None
TCGA.F4.6854	6	48213343	52220974	1125	0.0248	NEUTRAL	NA	20	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,IL17A,IL17F,MCM3,MUT,PGK2,PKHD1,RHAG,TFAP2B,TFAP2D"
TCGA.AA.3685	6	48525689	49081547	136	-0.1184	NEUTRAL	NA	0	None
TCGA.AA.3867	6	48607582	73871993	6090	-0.1568	NEUTRAL	NA	69	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,C6orf141,CENPQ,COL19A1,COL21A1,COL9A1,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KCNQ5,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MCM3,MLIP,MTRNR2L9,MUT,OGFRL1,PAQR8,PGK2,PHF3,PKHD1,PRIM2,PTP4A1,RAB23,RHAG,RIMS1,SDHAF4,SMAP1,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.A6.2685	6	48700353	170918030	36642	0.0895	NEUTRAL	NA	470	Too-Many
TCGA.A6.6648	6	48882256	77422496	6960	0.0345	NEUTRAL	NA	87	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,C6orf141,CD109,CENPQ,COL12A1,COL19A1,COL21A1,COL9A1,COX7A2,CRISP1,CRISP2,CRISP3,DDX43,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DPPA5,DST,EEF1A1,EFHC1,ELOVL5,EYS,FAM135A,FAM83B,FBXO9,FILIP1,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MB21D1,MCM3,MLIP,MTO1,MTRNR2L9,MUT,MYO6,OGFRL1,OOEP,PAQR8,PGK2,PHF3,PKHD1,PRIM2,PTP4A1,RAB23,RHAG,RIMS1,SDHAF4,SENP6,SLC17A5,SMAP1,TFAP2B,TFAP2D,TINAG,TMEM14A,TMEM30A,TRAM2,ZNF451"
TCGA.D5.6535	6	48965537	55167014	1963	0.3294	NEUTRAL	NA	40	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,MLIP,MUT,PAQR8,PGK2,PKHD1,RHAG,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2"
TCGA.AA.3685	6	49089444	49446508	77	0.2809	NEUTRAL	NA	2	"CENPQ,MUT"
TCGA.AG.3727	6	49132792	170918030	36609	-0.0006	NEUTRAL	NA	470	Too-Many
TCGA.AA.A00N.01A	6	49412315	49426798	8	-0.3691	NEUTRAL	NA	1	MUT
TCGA.AG.3909.01A	6	49419142	49426798	5	-0.2058	NEUTRAL	NA	1	MUT
TCGA.AA.A00L.01A	6	49437858	49459810	7	0.3616	NEUTRAL	NA	1	CENPQ
TCGA.AA.3685	6	49457834	49691220	76	0.0162	NEUTRAL	NA	5	"C6orf141,CENPQ,CRISP2,GLYATL3,RHAG"
TCGA.AG.3909.01A	6	49459810	49604317	12	-0.3216	NEUTRAL	NA	4	"C6orf141,CENPQ,GLYATL3,RHAG"
TCGA.AA.A00F.01A	6	49518454	50791068	50	0.1276	NEUTRAL	NA	13	"C6orf141,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,PGK2,RHAG,TFAP2B,TFAP2D"
TCGA.AA.A00L.01A	6	49518454	55739133	305	-0.1499	NEUTRAL	NA	40	"BMP5,C6orf141,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,MLIP,PAQR8,PGK2,PKHD1,RHAG,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2"
TCGA.AG.3909.01A	6	49660437	50016213	32	0.2313	NEUTRAL	NA	9	"CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,PGK2"
TCGA.AA.A00A.01A	6	49660437	71569856	541	-0.0884	NEUTRAL	NA	60	"ADGRB3,BAG2,BEND6,BMP5,COL19A1,COL21A1,COL9A1,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MCM3,MLIP,MTRNR2L9,PAQR8,PGK2,PHF3,PKHD1,PRIM2,PTP4A1,RAB23,SDHAF4,SMAP1,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.AA.3685	6	49880004	50328476	120	-0.1706	NEUTRAL	NA	5	"DEFB110,DEFB112,DEFB113,DEFB114,DEFB133"
TCGA.CK.4948.01B	6	49976802	128311866	2957	0.0227	NEUTRAL	NA	264	Too-Many
TCGA.AA.3949	6	50264143	97846570	12664	-0.0568	NEUTRAL	NA	139	Too-Many
TCGA.AA.3685	6	50336491	57295190	2175	0.3396	NEUTRAL	NA	37	"BAG2,BEND6,BMP5,COL21A1,DST,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MLIP,PAQR8,PKHD1,PRIM2,RAB23,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.A6.2686	6	50476552	70293200	4467	-0.0078	NEUTRAL	NA	45	"ADGRB3,BAG2,BEND6,BMP5,COL21A1,DST,EFHC1,ELOVL5,EYS,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KHDRBS2,KIAA1586,KLHL31,LGSN,LOC441155,LRRC1,MCM3,MLIP,MTRNR2L9,PAQR8,PHF3,PKHD1,PRIM2,PTP4A1,RAB23,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.DC.6682	6	50525626	58726423	2286	-0.4315	NEUTRAL	NA	37	"BAG2,BEND6,BMP5,COL21A1,DST,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MLIP,PAQR8,PKHD1,PRIM2,RAB23,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.AG.3909.01A	6	50681692	50740311	8	-0.4493	NEUTRAL	NA	1	TFAP2D
TCGA.AG.3611.01A	6	50825001	74104620	529	-0.2453	NEUTRAL	NA	59	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,COL19A1,COL21A1,COL9A1,DDX43,DPPA5,DST,EFHC1,ELOVL5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MCM3,MLIP,MTRNR2L9,OGFRL1,OOEP,PAQR8,PHF3,PKHD1,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.A6.6137	6	51088481	51651681	206	-0.3292	NEUTRAL	NA	1	PKHD1
TCGA.AA.A00F.01A	6	51483857	52663926	133	0.1181	NEUTRAL	NA	10	"EFHC1,GSTA1,GSTA2,IL17A,IL17F,MCM3,PAQR8,PKHD1,TMEM14A,TRAM2"
TCGA.AG.4009.01A	6	51483857	56599957	395	-0.0612	NEUTRAL	NA	29	"BMP5,COL21A1,DST,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,MLIP,PAQR8,PKHD1,TINAG,TMEM14A,TRAM2"
TCGA.A6.6137	6	51655406	156873670	30431	0.0097	NEUTRAL	NA	388	Too-Many
TCGA.AA.A00N.01A	6	51732611	51875079	13	0.1734	NEUTRAL	NA	1	PKHD1
TCGA.AA.3982	6	51801779	53882736	766	0.2999	NEUTRAL	NA	20	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,PAQR8,PKHD1,TMEM14A,TRAM2"
TCGA.AG.3591	6	51829706	100681427	13004	-0.1749	NEUTRAL	NA	147	Too-Many
TCGA.AA.3850	6	51838262	53871145	746	0.14235	NEUTRAL	NA	20	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,PAQR8,PKHD1,TMEM14A,TRAM2"
TCGA.AA.3509.01A	6	51941003	53787386	155	-0.0132	NEUTRAL	NA	20	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,PAQR8,PKHD1,TMEM14A,TRAM2"
TCGA.AZ.4684.01A	6	51941003	53787386	155	0.1367	NEUTRAL	NA	20	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,PAQR8,PKHD1,TMEM14A,TRAM2"
TCGA.AA.3811	6	51968698	53881010	713	0.2297	NEUTRAL	NA	19	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,PAQR8,TMEM14A,TRAM2"
TCGA.AA.3941	6	52002828	52270991	120	-0.1151	NEUTRAL	NA	4	"IL17A,IL17F,MCM3,PAQR8"
TCGA.AA.3844	6	52009599	53882736	701	0.035	NEUTRAL	NA	19	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,PAQR8,TMEM14A,TRAM2"
TCGA.AG.A016.01A	6	52052374	56047291	231	0.3	NEUTRAL	NA	27	"BMP5,COL21A1,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KLHL31,LRRC1,MCM3,MLIP,PAQR8,TINAG,TMEM14A,TRAM2"
TCGA.AA.A02H.01A	6	52101679	53989302	147	-0.082	NEUTRAL	NA	19	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17F,KLHL31,LRRC1,MCM3,MLIP,PAQR8,TMEM14A,TRAM2"
TCGA.AA.A00Q.01A	6	52109112	52267970	19	-0.3906	NEUTRAL	NA	3	"IL17F,MCM3,PAQR8"
TCGA.AA.A01C.01A	6	52109112	53989302	144	0.0224	NEUTRAL	NA	19	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17F,KLHL31,LRRC1,MCM3,MLIP,PAQR8,TMEM14A,TRAM2"
TCGA.AA.A017.01A	6	52129334	54013793	143	-0.2018	NEUTRAL	NA	18	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,KLHL31,LRRC1,MCM3,MLIP,PAQR8,TMEM14A,TRAM2"
TCGA.AA.A00N.01A	6	52129983	52141813	10	-0.2719	NEUTRAL	NA	1	MCM3
TCGA.AG.3909.01A	6	52130817	52141813	9	0.0955	NEUTRAL	NA	1	MCM3
TCGA.CK.5914.01A	6	52137991	52288726	16	-0.1454	NEUTRAL	NA	3	"EFHC1,MCM3,PAQR8"
TCGA.AA.A02K.01A	6	52209652	73904129	648	-0.0043	NEUTRAL	NA	49	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,COL19A1,COL21A1,COL9A1,DST,EFHC1,ELOVL5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,KCNQ5,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MLIP,MTRNR2L9,OGFRL1,PAQR8,PHF3,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.D5.5540	6	52256011	170918030	35677	0.0203	NEUTRAL	NA	450	Too-Many
TCGA.AA.A00Q.01A	6	52270075	53387184	94	0.0485	NEUTRAL	NA	14	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,PAQR8,TMEM14A,TRAM2"
TCGA.AA.A00N.01A	6	52285144	52663926	38	0.334	NEUTRAL	NA	5	"EFHC1,GSTA1,GSTA2,TMEM14A,TRAM2"
TCGA.AG.A00C.01A	6	52285144	56599957	304	-0.1438	NEUTRAL	NA	24	"BMP5,COL21A1,DST,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,KLHL31,LRRC1,MLIP,TINAG,TMEM14A,TRAM2"
TCGA.AG.A015.01A	6	52285144	112451031	2133	0.2651	NEUTRAL	NA	196	Too-Many
TCGA.AA.3941	6	52322416	53881311	577	-0.1435	NEUTRAL	NA	15	"EFHC1,ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,KLHL31,LRRC1,TMEM14A,TRAM2"
TCGA.EI.6511	6	52360788	170918030	35625	0.317	NEUTRAL	NA	448	Too-Many
TCGA.AG.A01W.01A	6	52464967	53855628	101	-0.1242	NEUTRAL	NA	13	"ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,KLHL31,LRRC1,TMEM14A"
TCGA.G4.6322	6	52555433	117352059	17477	0.008	NEUTRAL	NA	214	Too-Many
TCGA.AA.A010.01A	6	52615326	52962472	54	0.1791	NEUTRAL	NA	7	"FBXO9,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK"
TCGA.CM.6680	6	52630634	170918030	35455	0.0024	NEUTRAL	NA	445	Too-Many
TCGA.CK.5914.01A	6	52656607	52702283	11	0.1095	NEUTRAL	NA	2	"GSTA1,GSTA5"
TCGA.AG.3881	6	52679689	53597886	331	-0.3419	NEUTRAL	NA	9	"ELOVL5,FBXO9,GCLC,GCM1,GSTA3,GSTA4,GSTA5,ICK,KLHL31"
TCGA.AA.A00N.01A	6	52705469	52905882	25	0.3199	NEUTRAL	NA	4	"GSTA3,GSTA4,GSTA5,ICK"
TCGA.F4.6854	6	52723634	53317928	195	0.3712	NEUTRAL	NA	6	"ELOVL5,FBXO9,GCM1,GSTA3,GSTA4,ICK"
TCGA.D5.6898	6	52723634	54094373	513	0.1898	NEUTRAL	NA	10	"ELOVL5,FBXO9,GCLC,GCM1,GSTA3,GSTA4,ICK,KLHL31,LRRC1,MLIP"
TCGA.AA.A00F.01A	6	52761556	56911487	136	0.0598	NEUTRAL	NA	20	"BEND6,BMP5,COL21A1,DST,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GSTA3,GSTA4,HCRTR2,HMGCLL1,ICK,KIAA1586,KLHL31,LRRC1,MLIP,TINAG"
TCGA.AA.A004.01A	6	52767097	111543167	1978	-0.0485	NEUTRAL	NA	182	Too-Many
TCGA.CK.5914.01A	6	52843246	52858902	6	-0.137	NEUTRAL	NA	1	GSTA4
TCGA.AG.3909.01A	6	52843246	52871064	8	-0.0286	NEUTRAL	NA	2	"GSTA4,ICK"
TCGA.CK.5914.01A	6	52935771	52947261	6	-0.4519	NEUTRAL	NA	1	FBXO9
TCGA.AA.A00N.01A	6	52947261	52962472	7	-0.2401	NEUTRAL	NA	1	FBXO9
TCGA.AA.A010.01A	6	53010295	53140919	6	-0.1438	NEUTRAL	NA	2	"ELOVL5,GCM1"
TCGA.AG.3883	6	53096681	54054685	384	0.0288	NEUTRAL	NA	5	"ELOVL5,GCLC,KLHL31,LRRC1,MLIP"
TCGA.F4.6854	6	53321920	63420362	1680	0.0643	NEUTRAL	NA	20	"BAG2,BEND6,BMP5,COL21A1,DST,FAM83B,GCLC,GFRAL,HCRTR2,HMGCLL1,KHDRBS2,KIAA1586,KLHL31,LRRC1,MLIP,MTRNR2L9,PRIM2,RAB23,TINAG,ZNF451"
TCGA.AA.A010.01A	6	53363512	53387184	12	0.0892	NEUTRAL	NA	1	GCLC
TCGA.AA.A00N.01A	6	53378975	53516397	6	0.0105	NEUTRAL	NA	2	"GCLC,KLHL31"
TCGA.AG.3575	6	53510256	62567010	1421	0.018	NEUTRAL	NA	19	"BAG2,BEND6,BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,KHDRBS2,KIAA1586,KLHL31,LRRC1,MLIP,MTRNR2L9,PRIM2,RAB23,TINAG,ZNF451"
TCGA.AA.3666	6	53562565	53566050	4	-0.2324	NEUTRAL	NA	0	None
TCGA.AG.3881	6	53599268	170918030	35211	0.1134	NEUTRAL	NA	435	Too-Many
TCGA.AG.3909.01A	6	53706861	56535422	190	0.3277	NEUTRAL	NA	10	"BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,LRRC1,MLIP,TINAG"
TCGA.AA.A00Q.01A	6	53706861	90360404	939	0.072	NEUTRAL	NA	105	Too-Many
TCGA.AG.A00Y.01A	6	53784284	74104620	506	-0.195	NEUTRAL	NA	40	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,COL19A1,COL21A1,COL9A1,DDX43,DPPA5,DST,EYS,FAM135A,FAM83B,GFRAL,HCRTR2,HMGCLL1,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,KIAA1586,LGSN,LMBRD1,LOC441155,LRRC1,MLIP,MTRNR2L9,OGFRL1,OOEP,PHF3,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,TINAG,ZNF451"
TCGA.AG.A01W.01A	6	53877087	73014392	492	0.2191	NEUTRAL	NA	32	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,COL19A1,COL21A1,COL9A1,DST,EYS,FAM135A,FAM83B,GFRAL,HCRTR2,HMGCLL1,KHDRBS2,KIAA1586,LGSN,LMBRD1,LOC441155,MLIP,MTRNR2L9,OGFRL1,PHF3,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,TINAG,ZNF451"
TCGA.AA.3811	6	53881130	57211806	960	-0.251	NEUTRAL	NA	15	"BAG2,BEND6,BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,KIAA1586,MLIP,PRIM2,RAB23,TINAG,ZNF451"
TCGA.AA.3982	6	53883489	56130125	727	-0.402	NEUTRAL	NA	8	"BMP5,COL21A1,FAM83B,GFRAL,HCRTR2,HMGCLL1,MLIP,TINAG"
TCGA.AA.3844	6	53883489	87827826	8373	-0.4231	NEUTRAL	NA	82	"ADGRB3,B3GAT2,BAG2,BCKDHB,BEND6,BMP5,C6orf7,CD109,CEP162,CGA,COL12A1,COL19A1,COL21A1,COL9A1,COX7A2,CYB5R4,DDX43,DOPEY1,DPPA5,DST,EEF1A1,ELOVL4,EYS,FAM135A,FAM46A,FAM83B,FILIP1,GFRAL,HCRTR2,HMGCLL1,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,KIAA1586,LCA5,LGSN,LMBRD1,LOC441155,MB21D1,ME1,MEI4,MLIP,MRAP2,MTO1,MTRNR2L9,MYO6,NT5E,OGFRL1,OOEP,PGM3,PHF3,PHIP,PRIM2,PRSS35,PTP4A1,RAB23,RIMS1,RIPPLY2,RWDD2A,SDHAF4,SENP6,SH3BGRL2,SLC17A5,SMAP1,SNAP91,SNX14,SYNCRIP,TBX18,TINAG,TMEM30A,TPBG,TTK,UBE3D,ZNF451"
TCGA.AA.A010.01A	6	54013793	55940207	68	-0.3294	NEUTRAL	NA	8	"BMP5,COL21A1,FAM83B,GFRAL,HCRTR2,HMGCLL1,MLIP,TINAG"
TCGA.AA.A017.01A	6	54025101	73952089	480	0.1551	NEUTRAL	NA	35	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,COL19A1,COL21A1,COL9A1,DST,EYS,FAM135A,FAM83B,GFRAL,HCRTR2,HMGCLL1,KCNQ5,KHDC1,KHDC1L,KHDRBS2,KIAA1586,LGSN,LMBRD1,LOC441155,MLIP,MTRNR2L9,OGFRL1,PHF3,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,TINAG,ZNF451"
TCGA.AG.3883	6	54064266	90841731	9224	0.2019	NEUTRAL	NA	107	Too-Many
TCGA.D5.6898	6	54114291	170918030	34914	-0.0666	NEUTRAL	NA	434	Too-Many
TCGA.AF.A56K	6	54857287	58629920	767	0.2199	NEUTRAL	NA	12	"BAG2,BEND6,BMP5,COL21A1,DST,GFRAL,HCRTR2,HMGCLL1,KIAA1586,PRIM2,RAB23,ZNF451"
TCGA.D5.6535	6	55170511	170918030	34659	-0.1783	NEUTRAL	NA	430	Too-Many
TCGA.CK.5914.01A	6	55214836	55441820	14	0.2906	NEUTRAL	NA	2	"GFRAL,HMGCLL1"
TCGA.CM.5349	6	55217812	55266624	26	-0.3508	NEUTRAL	NA	1	GFRAL
TCGA.CM.5349	6	55267492	57142165	483	0.0932	NEUTRAL	NA	9	"BAG2,BEND6,BMP5,COL21A1,DST,HMGCLL1,KIAA1586,RAB23,ZNF451"
TCGA.AA.3518	6	55351281	55391814	30	-0.4321	NEUTRAL	NA	1	HMGCLL1
TCGA.AA.3518	6	55395819	127031912	19154	-0.0026	NEUTRAL	NA	227	Too-Many
TCGA.QL.A97D	6	55425386	170918030	34552	-0.1117	NEUTRAL	NA	429	Too-Many
TCGA.CK.5914.01A	6	55966209	56358806	35	0.3341	NEUTRAL	NA	2	"COL21A1,DST"
TCGA.AA.A00L.01A	6	56006509	56470814	14	0.1982	NEUTRAL	NA	2	"COL21A1,DST"
TCGA.F5.6811.01A	6	56074168	65771010	231	0.0905	NEUTRAL	NA	14	"BAG2,BEND6,COL21A1,DST,EYS,KHDRBS2,KIAA1586,LGSN,MTRNR2L9,PHF3,PRIM2,PTP4A1,RAB23,ZNF451"
TCGA.AA.3982	6	56130655	57215493	231	0.1335	NEUTRAL	NA	7	"BAG2,BEND6,DST,KIAA1586,PRIM2,RAB23,ZNF451"
TCGA.AA.3666	6	56288187	56298923	10	-0.2048	NEUTRAL	NA	0	None
TCGA.G4.6314	6	56295656	115326063	15671	-0.0062	NEUTRAL	NA	177	Too-Many
TCGA.AA.A02H.01A	6	56324892	56354258	17	0.2988	NEUTRAL	NA	1	DST
TCGA.AA.A010.01A	6	56357715	56362146	3	-0.2883	NEUTRAL	NA	1	DST
TCGA.AA.A010.01A	6	56375968	56392250	6	-0.1274	NEUTRAL	NA	1	DST
TCGA.AA.A010.01A	6	56393584	56426870	14	0.3655	NEUTRAL	NA	1	DST
TCGA.CK.5914.01A	6	56401528	56417890	4	0.0975	NEUTRAL	NA	1	DST
TCGA.AA.A010.01A	6	56433230	56476254	18	-0.2202	NEUTRAL	NA	1	DST
TCGA.AA.A01C.01A	6	56475178	56501321	19	-0.0843	NEUTRAL	NA	1	DST
TCGA.AA.A00L.01A	6	56480285	73843102	275	-0.2	NEUTRAL	NA	25	"ADGRB3,B3GAT2,BAG2,BEND6,COL19A1,COL9A1,DST,EYS,FAM135A,KCNQ5,KHDRBS2,KIAA1586,LGSN,LMBRD1,LOC441155,MTRNR2L9,OGFRL1,PHF3,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,ZNF451"
TCGA.AA.A02H.01A	6	56482734	56989481	40	0.2403	NEUTRAL	NA	4	"BEND6,DST,KIAA1586,ZNF451"
TCGA.CK.5914.01A	6	56492765	57190676	71	0.0352	NEUTRAL	NA	7	"BAG2,BEND6,DST,KIAA1586,PRIM2,RAB23,ZNF451"
TCGA.AA.A010.01A	6	56501321	56535422	8	0.1991	NEUTRAL	NA	1	DST
TCGA.AA.A01C.01A	6	56504018	56564410	8	0.2835	NEUTRAL	NA	1	DST
TCGA.AG.3909.01A	6	56564410	56883167	15	-0.2235	NEUTRAL	NA	2	"BEND6,DST"
TCGA.AA.A01C.01A	6	56599957	74063537	309	0.2432	NEUTRAL	NA	28	"ADGRB3,B3GAT2,BAG2,BEND6,COL19A1,COL9A1,DPPA5,DST,EYS,FAM135A,KCNQ5,KHDC1,KHDC1L,KHDRBS2,KIAA1586,LGSN,LMBRD1,LOC441155,MTRNR2L9,OGFRL1,PHF3,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,ZNF451"
TCGA.AG.A00C.01A	6	56707802	57190676	41	0.1379	NEUTRAL	NA	7	"BAG2,BEND6,DST,KIAA1586,PRIM2,RAB23,ZNF451"
TCGA.CA.5254	6	56729424	57169714	75	0.3007	NEUTRAL	NA	6	"BAG2,BEND6,DST,KIAA1586,RAB23,ZNF451"
TCGA.AG.4009.01A	6	56846587	71665515	242	-0.1202	NEUTRAL	NA	21	"ADGRB3,B3GAT2,BAG2,BEND6,COL19A1,COL9A1,EYS,FAM135A,KHDRBS2,KIAA1586,LGSN,LMBRD1,LOC441155,MTRNR2L9,PHF3,PRIM2,PTP4A1,RAB23,SDHAF4,SMAP1,ZNF451"
TCGA.AA.A010.01A	6	56857124	71998603	288	0.0481	NEUTRAL	NA	22	"ADGRB3,B3GAT2,BAG2,BEND6,COL19A1,COL9A1,EYS,FAM135A,KHDRBS2,KIAA1586,LGSN,LMBRD1,LOC441155,MTRNR2L9,OGFRL1,PHF3,PRIM2,PTP4A1,RAB23,SDHAF4,SMAP1,ZNF451"
TCGA.AA.A00N.01A	6	56989481	57017012	10	0.369	NEUTRAL	NA	1	ZNF451
TCGA.AG.3909.01A	6	56989481	57017012	10	0.1953	NEUTRAL	NA	1	ZNF451
TCGA.AA.A00F.01A	6	56989481	57037449	13	0.1506	NEUTRAL	NA	2	"BAG2,ZNF451"
TCGA.AG.4021	6	57051564	167234595	32781	0.0378	NEUTRAL	NA	396	Too-Many
TCGA.CM.5349	6	57167119	170918030	34130	0.0172	NEUTRAL	NA	420	Too-Many
TCGA.CA.5254	6	57179846	117154070	15891	-0.4359	NEUTRAL	NA	187	Too-Many
TCGA.AF.3911	6	57211806	57295190	12	0.1033	NEUTRAL	NA	1	PRIM2
TCGA.AA.3561	6	57226181	66699332	1234	0.2814	NEUTRAL	NA	8	"EYS,KHDRBS2,LGSN,LOC441155,MTRNR2L9,PHF3,PRIM2,PTP4A1"
TCGA.CA.6719	6	57227694	62369613	246	0.2201	NEUTRAL	NA	2	"MTRNR2L9,PRIM2"
TCGA.A6.3807	6	57227694	73187150	3257	-0.3667	NEUTRAL	NA	18	"ADGRB3,B3GAT2,COL19A1,COL9A1,EYS,FAM135A,KHDRBS2,LGSN,LMBRD1,LOC441155,MTRNR2L9,OGFRL1,PHF3,PRIM2,PTP4A1,RIMS1,SDHAF4,SMAP1"
TCGA.AA.3811	6	57232790	58432573	119	-0.3889	NEUTRAL	NA	1	PRIM2
TCGA.G5.6233	6	57232790	170918030	34121	-0.1833	NEUTRAL	NA	420	Too-Many
TCGA.AG.A00C.01A	6	57244656	62757736	16	-0.4073	NEUTRAL	NA	3	"KHDRBS2,MTRNR2L9,PRIM2"
TCGA.AG.A016.01A	6	57244656	70991034	167	0.2693	NEUTRAL	NA	12	"ADGRB3,COL19A1,COL9A1,EYS,KHDRBS2,LGSN,LMBRD1,LOC441155,MTRNR2L9,PHF3,PRIM2,PTP4A1"
TCGA.AF.3914.01A	6	57244656	109481738	1561	-0.1689	NEUTRAL	NA	140	Too-Many
TCGA.AA.3848	6	57248583	128813894	19191	-0.3162	NEUTRAL	NA	226	Too-Many
TCGA.DM.A28H	6	57282075	78962625	4885	0.349	NEUTRAL	NA	39	"ADGRB3,B3GAT2,CD109,COL12A1,COL19A1,COL9A1,COX7A2,DDX43,DPPA5,EEF1A1,EYS,FAM135A,FILIP1,HTR1B,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,LGSN,LMBRD1,LOC441155,MB21D1,MEI4,MTO1,MTRNR2L9,MYO6,OGFRL1,OOEP,PHF3,PRIM2,PTP4A1,RIMS1,SDHAF4,SENP6,SLC17A5,SMAP1,TMEM30A"
TCGA.AA.3685	6	57323778	58306257	94	-0.1296	NEUTRAL	NA	1	PRIM2
TCGA.AF.3911	6	57323778	81364486	5636	-0.3882	NEUTRAL	NA	48	"ADGRB3,B3GAT2,BCKDHB,C6orf7,CD109,COL12A1,COL19A1,COL9A1,COX7A2,DDX43,DPPA5,EEF1A1,ELOVL4,EYS,FAM135A,FILIP1,HMGN3,HTR1B,IMPG1,IRAK1BP1,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,LCA5,LGSN,LMBRD1,LOC441155,MB21D1,MEI4,MTO1,MTRNR2L9,MYO6,OGFRL1,OOEP,PHF3,PHIP,PRIM2,PTP4A1,RIMS1,SDHAF4,SENP6,SH3BGRL2,SLC17A5,SMAP1,TMEM30A,TTK"
TCGA.A6.2672	6	57344761	73586687	3380	0.1025	NEUTRAL	NA	19	"ADGRB3,B3GAT2,COL19A1,COL9A1,EYS,FAM135A,KCNQ5,KHDRBS2,LGSN,LMBRD1,LOC441155,MTRNR2L9,OGFRL1,PHF3,PRIM2,PTP4A1,RIMS1,SDHAF4,SMAP1"
TCGA.AA.3666	6	57539479	170918030	34108	-0.185	NEUTRAL	NA	419	Too-Many
TCGA.G4.6297	6	57666426	170918030	34048	-0.0783	NEUTRAL	NA	419	Too-Many
TCGA.F4.6856	6	57751211	58069871	24	-0.4921	NEUTRAL	NA	0	None
TCGA.DC.4745	6	58146086	58741496	74	0.1273	NEUTRAL	NA	0	None
TCGA.F4.6856	6	58146086	58774715	75	-0.0072	NEUTRAL	NA	0	None
TCGA.AA.3685	6	58308954	58774715	67	0.3047	NEUTRAL	NA	0	None
TCGA.AA.3811	6	58436236	65917711	876	-0.4058	NEUTRAL	NA	6	"EYS,KHDRBS2,LGSN,MTRNR2L9,PHF3,PTP4A1"
TCGA.AD.6965	6	58436236	78962625	4773	0.0061	NEUTRAL	NA	38	"ADGRB3,B3GAT2,CD109,COL12A1,COL19A1,COL9A1,COX7A2,DDX43,DPPA5,EEF1A1,EYS,FAM135A,FILIP1,HTR1B,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,LGSN,LMBRD1,LOC441155,MB21D1,MEI4,MTO1,MTRNR2L9,MYO6,OGFRL1,OOEP,PHF3,PTP4A1,RIMS1,SDHAF4,SENP6,SLC17A5,SMAP1,TMEM30A"
TCGA.DM.A1D9	6	58436236	170918030	33981	-0.0128	NEUTRAL	NA	419	Too-Many
TCGA.A6.2678	6	58542226	58741496	32	0.1901	NEUTRAL	NA	0	None
TCGA.AF.A56K	6	58653249	170918030	33877	0	NEUTRAL	NA	419	Too-Many
TCGA.DY.A1DF	6	58726423	101523548	11301	0.0372	NEUTRAL	NA	114	Too-Many
TCGA.DC.6682	6	58727178	162281411	30358	-0.1311	NEUTRAL	NA	385	Too-Many
TCGA.AA.3685	6	61972501	64008123	423	-0.1261	NEUTRAL	NA	3	"KHDRBS2,LGSN,MTRNR2L9"
TCGA.A6.4107	6	61972501	170918030	33941	-0.1521	NEUTRAL	NA	419	Too-Many
TCGA.DC.4745	6	62362799	162542478	30448	0.0458	NEUTRAL	NA	384	Too-Many
TCGA.AA.A00F.01A	6	62390850	62757736	7	-0.2204	NEUTRAL	NA	1	KHDRBS2
TCGA.AG.A00C.01A	6	62887053	64356419	13	0.1989	NEUTRAL	NA	4	"KHDRBS2,LGSN,PHF3,PTP4A1"
TCGA.AA.A00F.01A	6	62887053	64389883	14	0.3238	NEUTRAL	NA	4	"KHDRBS2,LGSN,PHF3,PTP4A1"
TCGA.CK.5914.01A	6	62995712	64394003	14	-0.3518	NEUTRAL	NA	4	"KHDRBS2,LGSN,PHF3,PTP4A1"
TCGA.CA.6719	6	63074387	170918030	33595	0.2872	NEUTRAL	NA	417	Too-Many
TCGA.F4.6854	6	63422004	64728484	229	0.3436	NEUTRAL	NA	4	"EYS,LGSN,PHF3,PTP4A1"
TCGA.CM.5863	6	63623770	132622812	19936	-0.2588	NEUTRAL	NA	240	Too-Many
TCGA.F4.6704	6	63826981	170918030	33500	-0.3908	NEUTRAL	NA	417	Too-Many
TCGA.AA.3685	6	64028391	68620675	1263	0.2114	NEUTRAL	NA	5	"EYS,LGSN,LOC441155,PHF3,PTP4A1"
TCGA.DM.A28K	6	64050875	78033995	4010	-0.0358	NEUTRAL	NA	33	"ADGRB3,B3GAT2,CD109,COL12A1,COL19A1,COL9A1,COX7A2,DDX43,DPPA5,EEF1A1,EYS,FAM135A,FILIP1,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LMBRD1,LOC441155,MB21D1,MTO1,MYO6,OGFRL1,OOEP,PHF3,PTP4A1,RIMS1,SDHAF4,SENP6,SLC17A5,SMAP1,TMEM30A"
TCGA.AG.3909.01A	6	64389883	70972927	131	0.3051	NEUTRAL	NA	7	"ADGRB3,COL19A1,COL9A1,EYS,LMBRD1,LOC441155,PHF3"
TCGA.AG.A00C.01A	6	64389883	73952089	238	-0.1733	NEUTRAL	NA	16	"ADGRB3,B3GAT2,COL19A1,COL9A1,EYS,FAM135A,KCNQ5,KHDC1,KHDC1L,LMBRD1,LOC441155,OGFRL1,PHF3,RIMS1,SDHAF4,SMAP1"
TCGA.AA.A00F.01A	6	64394003	73843102	197	0.0316	NEUTRAL	NA	14	"ADGRB3,B3GAT2,COL19A1,COL9A1,EYS,FAM135A,KCNQ5,LMBRD1,LOC441155,OGFRL1,PHF3,RIMS1,SDHAF4,SMAP1"
TCGA.F4.6459	6	64555462	162437696	29972	0	NEUTRAL	NA	380	Too-Many
TCGA.F4.6854	6	64731014	72291067	2277	-0.0018	NEUTRAL	NA	11	"ADGRB3,B3GAT2,COL19A1,COL9A1,EYS,FAM135A,LMBRD1,LOC441155,OGFRL1,SDHAF4,SMAP1"
TCGA.G4.6294	6	64916431	162531719	29941	0.0215	NEUTRAL	NA	380	Too-Many
TCGA.AA.3811	6	65920351	65994978	22	-0.3815	NEUTRAL	NA	1	EYS
TCGA.AA.3861.01A	6	66005738	109414971	1574	-0.1161	NEUTRAL	NA	133	Too-Many
TCGA.AA.3811	6	66019907	104763413	11301	-0.1852	NEUTRAL	NA	109	Too-Many
TCGA.AG.A023.01A	6	66044857	73952089	220	0.1974	NEUTRAL	NA	14	"ADGRB3,B3GAT2,COL19A1,COL9A1,EYS,FAM135A,KCNQ5,KHDC1,KHDC1L,LMBRD1,OGFRL1,RIMS1,SDHAF4,SMAP1"
TCGA.F5.6811.01A	6	66169044	97083072	1143	0.0235	NEUTRAL	NA	92	"ADGRB3,AKIRIN2,ANKRD6,B3GAT2,BACH2,BCKDHB,C6orf163,C6orf165,C6orf7,CASP8AP2,CD109,CEP162,CGA,CNR1,COL12A1,COL19A1,COL9A1,COX7A2,CYB5R4,DDX43,DOPEY1,DPPA5,EEF1A1,ELOVL4,EPHA7,EYS,FAM135A,FAM46A,FHL5,FILIP1,FUT9,GABRR1,GABRR2,GJA10,GJB7,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LCA5,LMBRD1,LYRM2,MANEA,MAP3K7,MB21D1,MDN1,ME1,MEI4,MRAP2,MTO1,MYO6,NT5E,OGFRL1,OOEP,ORC3,PGM3,PHIP,PM20D2,PNRC1,PRSS35,RARS2,RIMS1,RIPPLY2,RNGTT,RRAGD,RWDD2A,SDHAF4,SENP6,SH3BGRL2,SLC17A5,SLC35A1,SMAP1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TMEM30A,TPBG,TTK,UBE2J1,UBE3D,UFL1,ZNF292"
TCGA.AF.4110	6	66235972	137363834	21031	-0.1415	NEUTRAL	NA	265	Too-Many
TCGA.EI.6508	6	66533185	86402162	5934	0.0486	NEUTRAL	NA	58	"ADGRB3,B3GAT2,BCKDHB,C6orf7,CD109,CEP162,COL12A1,COL19A1,COL9A1,COX7A2,CYB5R4,DDX43,DOPEY1,DPPA5,EEF1A1,ELOVL4,FAM135A,FAM46A,FILIP1,HMGN3,HTR1B,IBTK,IMPG1,IRAK1BP1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LCA5,LMBRD1,MB21D1,ME1,MEI4,MRAP2,MTO1,MYO6,NT5E,OGFRL1,OOEP,PGM3,PHIP,PRSS35,RIMS1,RIPPLY2,RWDD2A,SDHAF4,SENP6,SH3BGRL2,SLC17A5,SMAP1,SNAP91,SNX14,SYNCRIP,TBX18,TMEM30A,TPBG,TTK,UBE3D"
TCGA.AA.3561	6	66699546	105809918	11417	-0.3827	NEUTRAL	NA	113	Too-Many
TCGA.AY.6196	6	67049405	121001632	15544	0.1246	NEUTRAL	NA	192	Too-Many
TCGA.A6.5667	6	67049405	129250420	17969	0.0324	NEUTRAL	NA	219	Too-Many
TCGA.D5.7000	6	67049405	162447611	29196	-0.0049	NEUTRAL	NA	378	Too-Many
TCGA.AY.6197	6	67049405	162496787	28710	0.0211	NEUTRAL	NA	378	Too-Many
TCGA.AZ.5403	6	67049405	162545871	29313	0.0316	NEUTRAL	NA	378	Too-Many
TCGA.AA.3494	6	68377547	69937178	440	-0.4358	NEUTRAL	NA	1	ADGRB3
TCGA.DM.A1D4	6	68509029	88846144	5887	0.0058	NEUTRAL	NA	70	"ADGRB3,AKIRIN2,B3GAT2,BCKDHB,C6orf163,C6orf165,C6orf7,CD109,CEP162,CGA,COL12A1,COL19A1,COL9A1,COX7A2,CYB5R4,DDX43,DOPEY1,DPPA5,EEF1A1,ELOVL4,FAM135A,FAM46A,FILIP1,GJB7,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LCA5,LMBRD1,MB21D1,ME1,MEI4,MRAP2,MTO1,MYO6,NT5E,OGFRL1,OOEP,ORC3,PGM3,PHIP,PRSS35,RARS2,RIMS1,RIPPLY2,RWDD2A,SDHAF4,SENP6,SH3BGRL2,SLC17A5,SLC35A1,SMAP1,SMIM8,SNAP91,SNX14,SPACA1,SYNCRIP,TBX18,TMEM30A,TPBG,TTK,UBE3D,ZNF292"
TCGA.AA.3685	6	68628463	72677501	1282	-0.1754	NEUTRAL	NA	10	"ADGRB3,B3GAT2,COL19A1,COL9A1,FAM135A,LMBRD1,OGFRL1,RIMS1,SDHAF4,SMAP1"
TCGA.AA.3655	6	68721020	69051003	112	-0.0701	NEUTRAL	NA	0	None
TCGA.AA.3655	6	69159162	69254778	27	-0.0065	NEUTRAL	NA	0	None
TCGA.AA.3655	6	69391151	69451080	16	-0.1449	NEUTRAL	NA	1	ADGRB3
TCGA.AA.3982	6	69564052	78911511	2739	-0.2885	NEUTRAL	NA	31	"ADGRB3,B3GAT2,CD109,COL12A1,COL19A1,COL9A1,COX7A2,DDX43,DPPA5,EEF1A1,FAM135A,FILIP1,HTR1B,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LMBRD1,MB21D1,MEI4,MTO1,MYO6,OGFRL1,OOEP,RIMS1,SDHAF4,SENP6,SLC17A5,SMAP1,TMEM30A"
TCGA.AA.A00O.01A	6	69640400	170892551	4270	0.0036	NEUTRAL	NA	412	Too-Many
TCGA.AA.3655	6	69711900	69760327	15	-0.0835	NEUTRAL	NA	1	ADGRB3
TCGA.AA.3697	6	69747027	170918030	31914	-0.1482	NEUTRAL	NA	412	Too-Many
TCGA.AG.3584	6	69757151	69781785	4	0.1447	NEUTRAL	NA	1	ADGRB3
TCGA.AA.3655	6	69879717	76038586	1869	0.0338	NEUTRAL	NA	26	"ADGRB3,B3GAT2,CD109,COL12A1,COL19A1,COL9A1,COX7A2,DDX43,DPPA5,EEF1A1,FAM135A,FILIP1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LMBRD1,MB21D1,MTO1,OGFRL1,OOEP,RIMS1,SDHAF4,SLC17A5,SMAP1,TMEM30A"
TCGA.AA.3494	6	69938176	170918030	31873	-0.0327	NEUTRAL	NA	412	Too-Many
TCGA.A6.2686	6	70295206	121719546	14879	-0.3655	NEUTRAL	NA	192	Too-Many
TCGA.AA.A00N.01A	6	70490315	70672651	13	-0.1501	NEUTRAL	NA	2	"COL19A1,LMBRD1"
TCGA.A6.5665	6	70740032	74432662	1174	-0.4168	NEUTRAL	NA	20	"B3GAT2,CD109,COL19A1,COL9A1,DDX43,DPPA5,EEF1A1,FAM135A,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OGFRL1,OOEP,RIMS1,SDHAF4,SLC17A5,SMAP1"
TCGA.AA.3850	6	70886742	72034918	372	-0.06305	NEUTRAL	NA	7	"B3GAT2,COL19A1,COL9A1,FAM135A,OGFRL1,SDHAF4,SMAP1"
TCGA.AA.3509.01A	6	70909265	73951204	133	0.2526	NEUTRAL	NA	11	"B3GAT2,COL19A1,COL9A1,FAM135A,KCNQ5,KHDC1,KHDC1L,OGFRL1,RIMS1,SDHAF4,SMAP1"
TCGA.CK.5914.01A	6	70976346	71137995	18	0.1231	NEUTRAL	NA	2	"COL9A1,FAM135A"
TCGA.AG.3909.01A	6	70990455	71137995	9	-0.232	NEUTRAL	NA	2	"COL9A1,FAM135A"
TCGA.AG.A016.01A	6	70992550	71012523	6	-0.4121	NEUTRAL	NA	1	COL9A1
TCGA.AG.A016.01A	6	71137995	81053344	418	0.3079	NEUTRAL	NA	36	"B3GAT2,BCKDHB,C6orf7,CD109,COL12A1,COX7A2,DDX43,DPPA5,EEF1A1,ELOVL4,FAM135A,FILIP1,HMGN3,HTR1B,IMPG1,IRAK1BP1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LCA5,MB21D1,MEI4,MTO1,MYO6,OGFRL1,OOEP,PHIP,RIMS1,SDHAF4,SENP6,SH3BGRL2,SLC17A5,SMAP1,TMEM30A,TTK"
TCGA.AG.3909.01A	6	71162143	73843567	85	0.2117	NEUTRAL	NA	7	"B3GAT2,FAM135A,KCNQ5,OGFRL1,RIMS1,SDHAF4,SMAP1"
TCGA.AA.3560	6	71230700	135274231	18827	-0.3403	NEUTRAL	NA	249	Too-Many
TCGA.CK.5914.01A	6	71233633	71482982	16	0.1525	NEUTRAL	NA	3	"FAM135A,SDHAF4,SMAP1"
TCGA.AA.A00N.01A	6	71242817	71464664	12	0.1085	NEUTRAL	NA	3	"FAM135A,SDHAF4,SMAP1"
TCGA.G5.6641	6	71273818	170918030	31372	-0.1551	NEUTRAL	NA	407	Too-Many
TCGA.AA.A00A.01A	6	71571319	73834170	20	-0.3443	NEUTRAL	NA	5	"B3GAT2,KCNQ5,OGFRL1,RIMS1,SMAP1"
TCGA.CK.5914.01A	6	72002953	72891940	11	0.0693	NEUTRAL	NA	2	"OGFRL1,RIMS1"
TCGA.AA.A010.01A	6	72086597	74001646	61	-0.2159	NEUTRAL	NA	4	"KCNQ5,KHDC1,KHDC1L,RIMS1"
TCGA.AA.3930.01A	6	72113208	73110161	35	-0.2463	NEUTRAL	NA	1	RIMS1
TCGA.AG.A026	6	72226002	77297902	1438	0.0508	NEUTRAL	NA	20	"CD109,COL12A1,COX7A2,DDX43,DPPA5,EEF1A1,FILIP1,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,MYO6,OOEP,RIMS1,SENP6,SLC17A5,TMEM30A"
TCGA.AA.3685	6	72681948	77056951	1199	0.2991	NEUTRAL	NA	20	"CD109,COL12A1,COX7A2,DDX43,DPPA5,EEF1A1,FILIP1,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,MYO6,OOEP,RIMS1,SENP6,SLC17A5,TMEM30A"
TCGA.AG.4009.01A	6	72943423	74072781	53	-0.1828	NEUTRAL	NA	6	"DPPA5,KCNQ5,KHDC1,KHDC1L,KHDC3L,RIMS1"
TCGA.A6.A56B	6	72964919	170918030	30733	0.0078	NEUTRAL	NA	403	Too-Many
TCGA.AG.A01W.01A	6	73050407	73159093	8	0.282	NEUTRAL	NA	1	RIMS1
TCGA.AA.3967.01A	6	73108640	74104620	34	-0.3512	NEUTRAL	NA	8	"DDX43,DPPA5,KCNQ5,KHDC1,KHDC1L,KHDC3L,OOEP,RIMS1"
TCGA.A6.3807	6	73187326	162128542	27068	-0.0083	NEUTRAL	NA	368	Too-Many
TCGA.DC.6160.01A	6	73388599	74534469	95	-0.3423	NEUTRAL	NA	12	"CD109,DDX43,DPPA5,EEF1A1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AG.A01W.01A	6	73388600	74136011	28	0.0981	NEUTRAL	NA	8	"DDX43,DPPA5,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,OOEP"
TCGA.A6.2672	6	73600985	168519223	29639	0.0693	NEUTRAL	NA	389	Too-Many
TCGA.AA.3850	6	73765812	73908792	60	0.08725	NEUTRAL	NA	1	KCNQ5
TCGA.CK.5914.01A	6	73814933	73952089	18	0.1071	NEUTRAL	NA	3	"KCNQ5,KHDC1,KHDC1L"
TCGA.AZ.4684.01A	6	73843102	74079279	24	0.0265	NEUTRAL	NA	6	"DPPA5,KCNQ5,KHDC1,KHDC1L,KHDC3L,OOEP"
TCGA.DM.A28M.01A	6	73843102	74492289	88	0.0117	NEUTRAL	NA	12	"CD109,DDX43,DPPA5,EEF1A1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AA.A00A.01A	6	73843102	90513019	691	-0.0504	NEUTRAL	NA	72	"AKIRIN2,ANKRD6,BCKDHB,C6orf163,C6orf165,C6orf7,CD109,CEP162,CGA,CNR1,COL12A1,COX7A2,CYB5R4,DDX43,DOPEY1,DPPA5,EEF1A1,ELOVL4,FAM46A,FILIP1,GABRR1,GABRR2,GJB7,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LCA5,LYRM2,MB21D1,MDN1,ME1,MEI4,MRAP2,MTO1,MYO6,NT5E,OOEP,ORC3,PGM3,PHIP,PM20D2,PNRC1,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SENP6,SH3BGRL2,SLC17A5,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TMEM30A,TPBG,TTK,UBE2J1,UBE3D,ZNF292"
TCGA.AA.3867	6	73872275	74588303	181	0.1329	NEUTRAL	NA	12	"CD109,DDX43,DPPA5,EEF1A1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AA.A00L.01A	6	73879417	74348082	54	0.2338	NEUTRAL	NA	11	"DDX43,DPPA5,EEF1A1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AG.3909.01A	6	73933419	73952089	6	0.2272	NEUTRAL	NA	2	"KHDC1,KHDC1L"
TCGA.AA.A02H.01A	6	73933419	74476445	71	-0.2908	NEUTRAL	NA	11	"CD109,DDX43,DPPA5,EEF1A1,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AA.A02K.01A	6	73933420	74201906	42	0.3324	NEUTRAL	NA	8	"DDX43,DPPA5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP"
TCGA.AG.3906.01A	6	74001646	74201905	38	0.3523	NEUTRAL	NA	7	"DDX43,DPPA5,KHDC1,KHDC3L,MB21D1,MTO1,OOEP"
TCGA.AG.3891.01A	6	74001646	74229554	44	0.2836	NEUTRAL	NA	8	"DDX43,DPPA5,EEF1A1,KHDC1,KHDC3L,MB21D1,MTO1,OOEP"
TCGA.AG.A023.01A	6	74001646	74407076	55	-0.5074	NEUTRAL	NA	10	"CD109,DDX43,DPPA5,EEF1A1,KHDC1,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AG.A00C.01A	6	74001646	74432887	56	0.3439	NEUTRAL	NA	10	"CD109,DDX43,DPPA5,EEF1A1,KHDC1,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AA.A00N.01A	6	74072404	74210267	38	-0.4094	NEUTRAL	NA	5	"DDX43,KHDC3L,MB21D1,MTO1,OOEP"
TCGA.AA.A01C.01A	6	74072404	74351386	50	-0.4749	NEUTRAL	NA	7	"DDX43,EEF1A1,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AG.4009.01A	6	74073291	74229554	39	0.178	NEUTRAL	NA	6	"DDX43,EEF1A1,KHDC3L,MB21D1,MTO1,OOEP"
TCGA.CM.6165.01A	6	74079279	74354091	47	-0.2359	NEUTRAL	NA	6	"DDX43,EEF1A1,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AZ.4684.01A	6	74103991	74363466	47	-0.482	NEUTRAL	NA	5	"DDX43,EEF1A1,MB21D1,MTO1,SLC17A5"
TCGA.AG.3909.01A	6	74104620	74161246	21	-0.1508	NEUTRAL	NA	2	"DDX43,MB21D1"
TCGA.AG.3611.01A	6	74107353	74191721	26	0.1757	NEUTRAL	NA	3	"DDX43,MB21D1,MTO1"
TCGA.AA.A02E.01A	6	74107353	74407076	45	-0.329	NEUTRAL	NA	6	"CD109,DDX43,EEF1A1,MB21D1,MTO1,SLC17A5"
TCGA.AA.3967.01A	6	74107353	74468628	51	0.1628	NEUTRAL	NA	6	"CD109,DDX43,EEF1A1,MB21D1,MTO1,SLC17A5"
TCGA.AG.3909.01A	6	74171551	74210267	10	0.3382	NEUTRAL	NA	1	MTO1
TCGA.AG.3611.01A	6	74192123	84925446	367	-0.1575	NEUTRAL	NA	36	"BCKDHB,C6orf7,CD109,CEP162,COL12A1,COX7A2,CYB5R4,DOPEY1,EEF1A1,ELOVL4,FAM46A,FILIP1,HMGN3,HTR1B,IBTK,IMPG1,IRAK1BP1,LCA5,ME1,MEI4,MRAP2,MTO1,MYO6,PGM3,PHIP,PRSS35,RIPPLY2,RWDD2A,SENP6,SH3BGRL2,SLC17A5,SNAP91,TMEM30A,TPBG,TTK,UBE3D"
TCGA.AA.A010.01A	6	74201905	74229554	7	0.2991	NEUTRAL	NA	2	"EEF1A1,MTO1"
TCGA.AA.A017.01A	6	74207409	74229554	6	0.2732	NEUTRAL	NA	2	"EEF1A1,MTO1"
TCGA.AG.3906.01A	6	74207409	74229554	6	-0.0575	NEUTRAL	NA	2	"EEF1A1,MTO1"
TCGA.AA.A02K.01A	6	74207433	84884917	458	-0.0075	NEUTRAL	NA	36	"BCKDHB,C6orf7,CD109,CEP162,COL12A1,COX7A2,CYB5R4,DOPEY1,EEF1A1,ELOVL4,FAM46A,FILIP1,HMGN3,HTR1B,IBTK,IMPG1,IRAK1BP1,LCA5,ME1,MEI4,MRAP2,MTO1,MYO6,PGM3,PHIP,PRSS35,RIPPLY2,RWDD2A,SENP6,SH3BGRL2,SLC17A5,SNAP91,TMEM30A,TPBG,TTK,UBE3D"
TCGA.AA.3930.01A	6	74210267	74229554	5	-0.2008	NEUTRAL	NA	2	"EEF1A1,MTO1"
TCGA.AG.3909.01A	6	74320096	74407076	9	-0.3076	NEUTRAL	NA	2	"CD109,SLC17A5"
TCGA.AG.3906.01A	6	74331489	74468628	12	0.3727	NEUTRAL	NA	2	"CD109,SLC17A5"
TCGA.CK.5914.01A	6	74345063	74517789	30	0.1485	NEUTRAL	NA	2	"CD109,SLC17A5"
TCGA.AG.3891.01A	6	74348082	74440028	7	0.2239	NEUTRAL	NA	2	"CD109,SLC17A5"
TCGA.AA.A00L.01A	6	74351386	76591369	84	-0.1113	NEUTRAL	NA	8	"CD109,COL12A1,COX7A2,FILIP1,MYO6,SENP6,SLC17A5,TMEM30A"
TCGA.AA.A01C.01A	6	74354091	90486268	743	0.1212	NEUTRAL	NA	62	"AKIRIN2,ANKRD6,BCKDHB,C6orf163,C6orf165,C6orf7,CD109,CEP162,CGA,CNR1,COL12A1,COX7A2,CYB5R4,DOPEY1,ELOVL4,FAM46A,FILIP1,GABRR1,GABRR2,GJB7,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,LCA5,LYRM2,MDN1,ME1,MEI4,MRAP2,MYO6,NT5E,ORC3,PGM3,PHIP,PM20D2,PNRC1,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SENP6,SH3BGRL2,SLC17A5,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TMEM30A,TPBG,TTK,UBE2J1,UBE3D,ZNF292"
TCGA.AG.A01W.01A	6	74361485	74533152	21	-0.3287	NEUTRAL	NA	2	"CD109,SLC17A5"
TCGA.CM.6165.01A	6	74363466	107103453	1167	0.0703	NEUTRAL	NA	98	"AIM1,AKIRIN2,ANKRD6,ASCC3,ATG5,BACH2,BCKDHB,BVES,C6orf163,C6orf165,C6orf7,CASP8AP2,CCNC,CD109,CEP162,CGA,CNR1,COL12A1,COQ3,COX7A2,CYB5R4,DOPEY1,ELOVL4,EPHA7,FAM46A,FAXC,FBXL4,FHL5,FILIP1,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HACE1,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,KLHL32,LCA5,LIN28B,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MEI4,MMS22L,MRAP2,MYO6,NDUFAF4,NT5E,ORC3,PGM3,PHIP,PM20D2,PNISR,PNRC1,POPDC3,POU3F2,PRDM1,PRDM13,PREP,PRSS35,QRSL1,RARS2,RIPPLY2,RNGTT,RRAGD,RTN4IP1,RWDD2A,SENP6,SH3BGRL2,SIM1,SLC17A5,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TMEM30A,TPBG,TSTD3,TTK,UBE2J1,UBE3D,UFL1,USP45,ZNF292"
TCGA.AA.3850	6	74365177	74498828	37	0.26855	NEUTRAL	NA	1	CD109
TCGA.AG.3909.01A	6	74432887	74533131	30	0.371	NEUTRAL	NA	1	CD109
TCGA.AG.A01N.01A	6	74432887	75823289	46	0.127	NEUTRAL	NA	2	"CD109,COL12A1"
TCGA.AG.4009.01A	6	74432887	86277187	483	-0.0732	NEUTRAL	NA	36	"BCKDHB,C6orf7,CD109,CEP162,COL12A1,COX7A2,CYB5R4,DOPEY1,ELOVL4,FAM46A,FILIP1,HMGN3,HTR1B,IBTK,IMPG1,IRAK1BP1,LCA5,ME1,MEI4,MRAP2,MYO6,NT5E,PGM3,PHIP,PRSS35,RIPPLY2,RWDD2A,SENP6,SH3BGRL2,SNAP91,SNX14,TBX18,TMEM30A,TPBG,TTK,UBE3D"
TCGA.AG.A023.01A	6	74432887	96651055	804	0.0654	NEUTRAL	NA	68	"AKIRIN2,ANKRD6,BACH2,BCKDHB,C6orf163,C6orf165,C6orf7,CASP8AP2,CD109,CEP162,CGA,CNR1,COL12A1,COX7A2,CYB5R4,DOPEY1,ELOVL4,EPHA7,FAM46A,FILIP1,FUT9,GABRR1,GABRR2,GJA10,GJB7,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,LCA5,LYRM2,MANEA,MAP3K7,MDN1,ME1,MEI4,MRAP2,MYO6,NT5E,ORC3,PGM3,PHIP,PM20D2,PNRC1,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SENP6,SH3BGRL2,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TMEM30A,TPBG,TTK,UBE2J1,UBE3D,ZNF292"
TCGA.A6.5665	6	74433211	166038121	28451	0.093	NEUTRAL	NA	361	Too-Many
TCGA.AG.A00C.01A	6	74440028	83888336	351	-0.1703	NEUTRAL	NA	25	"BCKDHB,C6orf7,CD109,COL12A1,COX7A2,DOPEY1,ELOVL4,FAM46A,FILIP1,HMGN3,HTR1B,IBTK,IMPG1,IRAK1BP1,LCA5,MEI4,MYO6,PGM3,PHIP,SENP6,SH3BGRL2,TMEM30A,TPBG,TTK,UBE3D"
TCGA.AA.A00F.01A	6	74440028	97246326	709	0.0639	NEUTRAL	NA	71	"AKIRIN2,ANKRD6,BACH2,BCKDHB,C6orf163,C6orf165,C6orf7,CASP8AP2,CD109,CEP162,CGA,CNR1,COL12A1,COX7A2,CYB5R4,DOPEY1,ELOVL4,EPHA7,FAM46A,FHL5,FILIP1,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,LCA5,LYRM2,MANEA,MAP3K7,MDN1,ME1,MEI4,MRAP2,MYO6,NT5E,ORC3,PGM3,PHIP,PM20D2,PNRC1,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SENP6,SH3BGRL2,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TMEM30A,TPBG,TTK,UBE2J1,UBE3D,UFL1,ZNF292"
TCGA.AG.3891.01A	6	74446064	74533131	28	-0.2384	NEUTRAL	NA	1	CD109
TCGA.AA.3967.01A	6	74472069	82900780	270	-0.3586	NEUTRAL	NA	21	"BCKDHB,C6orf7,CD109,COL12A1,COX7A2,ELOVL4,FAM46A,FILIP1,HMGN3,HTR1B,IBTK,IMPG1,IRAK1BP1,LCA5,MEI4,MYO6,PHIP,SENP6,SH3BGRL2,TMEM30A,TTK"
TCGA.AG.3906.01A	6	74472069	105298749	1030	-0.0547	NEUTRAL	NA	88	"AKIRIN2,ANKRD6,ASCC3,BACH2,BCKDHB,C6orf163,C6orf165,C6orf7,CASP8AP2,CCNC,CD109,CEP162,CGA,CNR1,COL12A1,COQ3,COX7A2,CYB5R4,DOPEY1,ELOVL4,EPHA7,FAM46A,FAXC,FBXL4,FHL5,FILIP1,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HACE1,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,KLHL32,LCA5,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MEI4,MMS22L,MRAP2,MYO6,NDUFAF4,NT5E,ORC3,PGM3,PHIP,PM20D2,PNISR,PNRC1,POU3F2,PRDM13,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SENP6,SH3BGRL2,SIM1,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TMEM30A,TPBG,TSTD3,TTK,UBE2J1,UBE3D,UFL1,USP45,ZNF292"
TCGA.AG.A00Y.01A	6	74472069	149838437	2918	-0.0521	NEUTRAL	NA	289	Too-Many
TCGA.AA.3930.01A	6	74475643	79770145	212	0.0521	NEUTRAL	NA	12	"CD109,COL12A1,COX7A2,FILIP1,HTR1B,IMPG1,IRAK1BP1,MEI4,MYO6,PHIP,SENP6,TMEM30A"
TCGA.AA.A017.01A	6	74477748	75823289	36	0.0799	NEUTRAL	NA	2	"CD109,COL12A1"
TCGA.AA.3850	6	74502209	81192454	1921	-0.48655	NEUTRAL	NA	19	"BCKDHB,C6orf7,CD109,COL12A1,COX7A2,ELOVL4,FILIP1,HMGN3,HTR1B,IMPG1,IRAK1BP1,LCA5,MEI4,MYO6,PHIP,SENP6,SH3BGRL2,TMEM30A,TTK"
TCGA.AA.A00N.01A	6	74519677	75827077	26	-0.0055	NEUTRAL	NA	2	"CD109,COL12A1"
TCGA.AG.A01W.01A	6	74534470	76442270	110	0.2758	NEUTRAL	NA	6	"CD109,COL12A1,COX7A2,FILIP1,SENP6,TMEM30A"
TCGA.DC.6160.01A	6	74537825	170734476	4356	0.0858	NEUTRAL	NA	388	Too-Many
TCGA.AA.3867	6	74590312	78979397	1223	-0.1641	NEUTRAL	NA	9	"COL12A1,COX7A2,FILIP1,HTR1B,IMPG1,MEI4,MYO6,SENP6,TMEM30A"
TCGA.AZ.6600	6	74689816	102042952	7906	0.0894	NEUTRAL	NA	86	"AKIRIN2,ANKRD6,ASCC3,BACH2,BCKDHB,C6orf163,C6orf165,C6orf7,CASP8AP2,CCNC,CEP162,CGA,CNR1,COL12A1,COQ3,COX7A2,CYB5R4,DOPEY1,ELOVL4,EPHA7,FAM46A,FAXC,FBXL4,FHL5,FILIP1,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,KLHL32,LCA5,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MEI4,MMS22L,MRAP2,MYO6,NDUFAF4,NT5E,ORC3,PGM3,PHIP,PM20D2,PNISR,PNRC1,POU3F2,PRDM13,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SENP6,SH3BGRL2,SIM1,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TMEM30A,TPBG,TSTD3,TTK,UBE2J1,UBE3D,UFL1,USP45,ZNF292"
TCGA.F5.6813	6	75235896	76760304	374	0.0084	NEUTRAL	NA	7	"COL12A1,COX7A2,FILIP1,IMPG1,MYO6,SENP6,TMEM30A"
TCGA.AG.A01Y	6	75451100	170918030	30099	0.0113	NEUTRAL	NA	390	Too-Many
TCGA.CK.5914.01A	6	75796170	75816086	13	-0.0535	NEUTRAL	NA	1	COL12A1
TCGA.AG.3891.01A	6	75811244	76072443	68	-0.337	NEUTRAL	NA	4	"COL12A1,COX7A2,FILIP1,TMEM30A"
TCGA.AG.3909.01A	6	75811244	80631312	199	0.248	NEUTRAL	NA	16	"C6orf7,COL12A1,COX7A2,ELOVL4,FILIP1,HMGN3,HTR1B,IMPG1,IRAK1BP1,LCA5,MEI4,MYO6,PHIP,SENP6,SH3BGRL2,TMEM30A"
TCGA.AA.A010.01A	6	75812284	75953394	55	-0.331	NEUTRAL	NA	2	"COL12A1,COX7A2"
TCGA.AA.A02H.01A	6	75848510	75852946	3	-0.4651	NEUTRAL	NA	1	COL12A1
TCGA.AG.A01N.01A	6	75875263	76582890	69	0.2658	NEUTRAL	NA	6	"COL12A1,COX7A2,FILIP1,MYO6,SENP6,TMEM30A"
TCGA.AA.A00N.01A	6	75892779	75949973	11	-0.5011	NEUTRAL	NA	2	"COL12A1,COX7A2"
TCGA.CK.5914.01A	6	75892779	76656984	87	0.2904	NEUTRAL	NA	7	"COL12A1,COX7A2,FILIP1,IMPG1,MYO6,SENP6,TMEM30A"
TCGA.AA.A010.01A	6	75965768	89616035	528	0.2023	NEUTRAL	NA	48	"AKIRIN2,BCKDHB,C6orf163,C6orf165,C6orf7,CEP162,CGA,CNR1,CYB5R4,DOPEY1,ELOVL4,FAM46A,FILIP1,GJB7,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,LCA5,ME1,MEI4,MRAP2,MYO6,NT5E,ORC3,PGM3,PHIP,PRSS35,RARS2,RIPPLY2,RNGTT,RWDD2A,SENP6,SH3BGRL2,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SYNCRIP,TBX18,TMEM30A,TPBG,TTK,UBE3D,ZNF292"
TCGA.AA.A02H.01A	6	75968485	75970487	3	-0.289	NEUTRAL	NA	1	TMEM30A
TCGA.AA.A017.01A	6	75994101	76591369	49	0.0293	NEUTRAL	NA	4	"FILIP1,MYO6,SENP6,TMEM30A"
TCGA.AG.3891.01A	6	76124381	76425073	22	0.0727	NEUTRAL	NA	2	"FILIP1,SENP6"
TCGA.AA.3655	6	76149901	76227112	26	0.0743	NEUTRAL	NA	1	FILIP1
TCGA.EI.6512	6	76165523	78403352	636	0.3061	NEUTRAL	NA	6	"FILIP1,HTR1B,IMPG1,MEI4,MYO6,SENP6"
TCGA.AA.3655	6	76241526	76586196	62	0.1361	NEUTRAL	NA	2	"MYO6,SENP6"
TCGA.AA.A02H.01A	6	76388248	76532447	10	-0.0273	NEUTRAL	NA	2	"MYO6,SENP6"
TCGA.AG.A01W.01A	6	76443460	76589153	11	-0.2283	NEUTRAL	NA	1	MYO6
TCGA.AG.3891.01A	6	76527215	105526272	916	-0.1986	NEUTRAL	NA	83	"AKIRIN2,ANKRD6,ASCC3,BACH2,BCKDHB,C6orf163,C6orf165,C6orf7,CASP8AP2,CCNC,CEP162,CGA,CNR1,COQ3,CYB5R4,DOPEY1,ELOVL4,EPHA7,FAM46A,FAXC,FBXL4,FHL5,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HACE1,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,KLHL32,LCA5,LIN28B,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MEI4,MMS22L,MRAP2,MYO6,NDUFAF4,NT5E,ORC3,PGM3,PHIP,PM20D2,PNISR,PNRC1,POU3F2,PRDM13,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SH3BGRL2,SIM1,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TPBG,TSTD3,TTK,UBE2J1,UBE3D,UFL1,USP45,ZNF292"
TCGA.AA.3509.01A	6	76542512	76608012	25	-0.352	NEUTRAL	NA	1	MYO6
TCGA.AZ.4684.01A	6	76568566	76617275	18	-0.2117	NEUTRAL	NA	1	MYO6
TCGA.AG.A01N.01A	6	76589488	76621346	12	-0.2779	NEUTRAL	NA	1	MYO6
TCGA.AA.A02H.01A	6	76589488	76631743	16	0.0348	NEUTRAL	NA	2	"IMPG1,MYO6"
TCGA.AG.A01W.01A	6	76594920	76639595	17	0.2933	NEUTRAL	NA	2	"IMPG1,MYO6"
TCGA.AA.A00L.01A	6	76595665	76624490	12	0.3425	NEUTRAL	NA	1	MYO6
TCGA.AA.A017.01A	6	76599757	135784211	2224	0.071	NEUTRAL	NA	229	Too-Many
TCGA.AA.A00L.01A	6	76631743	91296446	584	-0.1555	NEUTRAL	NA	58	"AKIRIN2,ANKRD6,BACH2,BCKDHB,C6orf163,C6orf165,C6orf7,CASP8AP2,CEP162,CGA,CNR1,CYB5R4,DOPEY1,ELOVL4,FAM46A,GABRR1,GABRR2,GJA10,GJB7,HMGN3,HTR1B,HTR1E,IBTK,IMPG1,IRAK1BP1,LCA5,LYRM2,MAP3K7,MDN1,ME1,MEI4,MRAP2,NT5E,ORC3,PGM3,PHIP,PM20D2,PNRC1,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SH3BGRL2,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TPBG,TTK,UBE2J1,UBE3D,ZNF292"
TCGA.AG.A01W.01A	6	76646209	76653253	4	-0.4051	NEUTRAL	NA	1	IMPG1
TCGA.AG.A01W.01A	6	76656478	79843828	65	0.2767	NEUTRAL	NA	5	"HTR1B,IMPG1,IRAK1BP1,MEI4,PHIP"
TCGA.AG.A01N.01A	6	76720811	80724148	77	0.2253	NEUTRAL	NA	11	"C6orf7,ELOVL4,HMGN3,HTR1B,IMPG1,IRAK1BP1,LCA5,MEI4,PHIP,SH3BGRL2,TTK"
TCGA.F5.6813	6	76762459	77352063	153	-0.4317	NEUTRAL	NA	1	IMPG1
TCGA.AA.3685	6	77064997	81649205	1386	-0.1517	NEUTRAL	NA	11	"BCKDHB,C6orf7,ELOVL4,HMGN3,HTR1B,IRAK1BP1,LCA5,MEI4,PHIP,SH3BGRL2,TTK"
TCGA.AG.A026	6	77328691	162702831	26317	0.0379	NEUTRAL	NA	349	Too-Many
TCGA.F5.6813	6	77352740	163531071	26581	0.0066	NEUTRAL	NA	350	Too-Many
TCGA.DC.6155	6	77452269	87073155	2778	0.0475	NEUTRAL	NA	29	"BCKDHB,C6orf7,CEP162,CYB5R4,DOPEY1,ELOVL4,FAM46A,HMGN3,HTR1B,IBTK,IRAK1BP1,LCA5,ME1,MEI4,MRAP2,NT5E,PGM3,PHIP,PRSS35,RIPPLY2,RWDD2A,SH3BGRL2,SNAP91,SNX14,SYNCRIP,TBX18,TPBG,TTK,UBE3D"
TCGA.AG.3725	6	77452269	170918030	29649	0.3382	NEUTRAL	NA	383	Too-Many
TCGA.AA.A01S	6	77461072	78962625	458	-0.04665	NEUTRAL	NA	2	"HTR1B,MEI4"
TCGA.BM.6198	6	77461072	111656913	9984	0.08265	NEUTRAL	NA	124	Too-Many
TCGA.A6.6648	6	77461072	118326205	11822	0.0135	NEUTRAL	NA	157	Too-Many
TCGA.EI.6512	6	78437123	78962625	153	0.2906	NEUTRAL	NA	1	MEI4
TCGA.F4.6854	6	78520582	82972883	1348	0.006	NEUTRAL	NA	12	"BCKDHB,C6orf7,ELOVL4,FAM46A,HMGN3,IBTK,IRAK1BP1,LCA5,MEI4,PHIP,SH3BGRL2,TTK"
TCGA.AG.3594	6	78744832	108791306	8839	0.0049	NEUTRAL	NA	97	"AIM1,AKIRIN2,ANKRD6,ASCC3,ATG5,BACH2,BCKDHB,BEND3,BVES,C6orf163,C6orf165,C6orf203,C6orf7,CASP8AP2,CCNC,CEP162,CGA,CNR1,COQ3,CYB5R4,DOPEY1,ELOVL4,EPHA7,FAM46A,FAXC,FBXL4,FHL5,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HACE1,HMGN3,HTR1E,IBTK,IRAK1BP1,KLHL32,LACE1,LCA5,LIN28B,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MMS22L,MRAP2,NDUFAF4,NR2E1,NT5E,ORC3,OSTM1,PDSS2,PGM3,PHIP,PM20D2,PNISR,PNRC1,POPDC3,POU3F2,PRDM1,PRDM13,PREP,PRSS35,QRSL1,RARS2,RIPPLY2,RNGTT,RRAGD,RTN4IP1,RWDD2A,SCML4,SEC63,SH3BGRL2,SIM1,SLC35A1,SMIM8,SNAP91,SNX14,SNX3,SOBP,SPACA1,SRSF12,SYNCRIP,TBX18,TPBG,TSTD3,TTK,UBE2J1,UBE3D,UFL1,USP45,ZNF292"
TCGA.AA.3982	6	78914985	81301663	718	-0.3045	NEUTRAL	NA	9	"BCKDHB,C6orf7,ELOVL4,HMGN3,IRAK1BP1,LCA5,PHIP,SH3BGRL2,TTK"
TCGA.D5.6538	6	79026685	170918030	29194	0.3644	NEUTRAL	NA	381	Too-Many
TCGA.AA.3867	6	79039233	85563068	1915	-0.1064	NEUTRAL	NA	24	"BCKDHB,C6orf7,CEP162,CYB5R4,DOPEY1,ELOVL4,FAM46A,HMGN3,IBTK,IRAK1BP1,LCA5,ME1,MRAP2,PGM3,PHIP,PRSS35,RIPPLY2,RWDD2A,SH3BGRL2,SNAP91,TBX18,TPBG,TTK,UBE3D"
TCGA.CM.5860	6	79039233	93229942	4246	0.2759	NEUTRAL	NA	55	"AKIRIN2,ANKRD6,BACH2,BCKDHB,C6orf163,C6orf165,C6orf7,CASP8AP2,CEP162,CGA,CNR1,CYB5R4,DOPEY1,ELOVL4,FAM46A,GABRR1,GABRR2,GJA10,GJB7,HMGN3,HTR1E,IBTK,IRAK1BP1,LCA5,LYRM2,MAP3K7,MDN1,ME1,MRAP2,NT5E,ORC3,PGM3,PHIP,PM20D2,PNRC1,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SH3BGRL2,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TPBG,TTK,UBE2J1,UBE3D,ZNF292"
TCGA.D5.6931	6	79039233	112740966	9834	-0.3675	NEUTRAL	NA	129	Too-Many
TCGA.DM.A1HA	6	79039233	115349859	10600	-0.0012	NEUTRAL	NA	132	Too-Many
TCGA.AD.6965	6	79039233	162155101	25543	0.0244	NEUTRAL	NA	347	Too-Many
TCGA.G4.6310	6	79039233	162428288	25708	0.0556	NEUTRAL	NA	347	Too-Many
TCGA.AA.3866	6	79039233	170918030	29192	-0.0368	NEUTRAL	NA	381	Too-Many
TCGA.AA.A01S	6	79039233	170918030	29196	0.00075	NEUTRAL	NA	381	Too-Many
TCGA.DM.A0XD	6	79039233	170918030	29095	-0.0064	NEUTRAL	NA	381	Too-Many
TCGA.EI.6512	6	79039233	170918030	29206	0.2897	NEUTRAL	NA	381	Too-Many
TCGA.AA.3556	6	79188905	90091120	3149	0.0237	NEUTRAL	NA	48	"AKIRIN2,BCKDHB,C6orf163,C6orf165,C6orf7,CEP162,CGA,CNR1,CYB5R4,DOPEY1,ELOVL4,FAM46A,GABRR1,GABRR2,GJB7,HMGN3,HTR1E,IBTK,IRAK1BP1,LCA5,ME1,MRAP2,NT5E,ORC3,PGM3,PHIP,PM20D2,PNRC1,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SH3BGRL2,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TPBG,TTK,UBE2J1,UBE3D,ZNF292"
TCGA.AA.A02H.01A	6	79911327	79944169	6	-0.1929	NEUTRAL	NA	1	HMGN3
TCGA.AA.3930.01A	6	79944169	84935992	238	0.133	NEUTRAL	NA	21	"BCKDHB,C6orf7,CEP162,CYB5R4,DOPEY1,ELOVL4,FAM46A,HMGN3,IBTK,LCA5,ME1,MRAP2,PGM3,PRSS35,RIPPLY2,RWDD2A,SH3BGRL2,SNAP91,TPBG,TTK,UBE3D"
TCGA.AG.A01W.01A	6	79968054	79981336	5	-0.4	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	6	80462865	80692582	7	-0.0544	NEUTRAL	NA	2	"C6orf7,ELOVL4"
TCGA.AA.A02H.01A	6	80629089	80722978	11	0.3651	NEUTRAL	NA	2	"ELOVL4,TTK"
TCGA.AG.3909.01A	6	80634612	80724148	11	-0.481	NEUTRAL	NA	2	"ELOVL4,TTK"
TCGA.AA.A00D.01A	6	80634612	80838812	26	0.1898	NEUTRAL	NA	3	"BCKDHB,ELOVL4,TTK"
TCGA.AG.A01W.01A	6	80713565	80797888	13	0.2767	NEUTRAL	NA	1	TTK
TCGA.CK.5914.01A	6	80715514	80724148	8	-0.4149	NEUTRAL	NA	1	TTK
TCGA.AG.3909.01A	6	80732014	83888336	106	0.1747	NEUTRAL	NA	8	"BCKDHB,DOPEY1,FAM46A,IBTK,PGM3,TPBG,TTK,UBE3D"
TCGA.AG.A01W.01A	6	80806994	83891977	65	0.1425	NEUTRAL	NA	7	"BCKDHB,DOPEY1,FAM46A,IBTK,PGM3,TPBG,UBE3D"
TCGA.AG.A01N.01A	6	80877373	83832565	58	0.143	NEUTRAL	NA	6	"BCKDHB,DOPEY1,FAM46A,IBTK,TPBG,UBE3D"
TCGA.AA.A00D.01A	6	80877373	90357714	358	-0.1111	NEUTRAL	NA	43	"AKIRIN2,ANKRD6,BCKDHB,C6orf163,C6orf165,CEP162,CGA,CNR1,CYB5R4,DOPEY1,FAM46A,GABRR1,GABRR2,GJB7,HTR1E,IBTK,LYRM2,MDN1,ME1,MRAP2,NT5E,ORC3,PGM3,PM20D2,PNRC1,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,RWDD2A,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TPBG,UBE2J1,UBE3D,ZNF292"
TCGA.AA.3509.01A	6	80982824	84895998	171	0.3449	NEUTRAL	NA	15	"BCKDHB,CEP162,CYB5R4,DOPEY1,FAM46A,IBTK,ME1,MRAP2,PGM3,PRSS35,RIPPLY2,RWDD2A,SNAP91,TPBG,UBE3D"
TCGA.CK.5914.01A	6	81053344	82943828	31	0.3433	NEUTRAL	NA	3	"BCKDHB,FAM46A,IBTK"
TCGA.AF.3911	6	81425968	170918030	28462	-0.4498	NEUTRAL	NA	372	Too-Many
TCGA.AA.3685	6	81649643	83859626	633	0.3224	NEUTRAL	NA	5	"DOPEY1,FAM46A,IBTK,TPBG,UBE3D"
TCGA.D5.6922	6	81729596	170918030	28309	-0.0277	NEUTRAL	NA	372	Too-Many
TCGA.AA.3982	6	82441870	87749814	1445	-0.248	NEUTRAL	NA	19	"CEP162,CYB5R4,DOPEY1,FAM46A,HTR1E,IBTK,ME1,MRAP2,NT5E,PGM3,PRSS35,RIPPLY2,RWDD2A,SNAP91,SNX14,SYNCRIP,TBX18,TPBG,UBE3D"
TCGA.AA.3850	6	82737198	83091075	77	0.16625	NEUTRAL	NA	2	"IBTK,TPBG"
TCGA.AA.3941	6	82753897	83088817	67	-0.2669	NEUTRAL	NA	2	"IBTK,TPBG"
TCGA.AG.A016.01A	6	82881095	107955661	864	0.2623	NEUTRAL	NA	81	"AIM1,AKIRIN2,ANKRD6,ASCC3,ATG5,BACH2,BEND3,BVES,C6orf163,C6orf165,C6orf203,CASP8AP2,CCNC,CEP162,CGA,CNR1,COQ3,CYB5R4,DOPEY1,EPHA7,FAXC,FBXL4,FHL5,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HACE1,HTR1E,IBTK,KLHL32,LIN28B,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MMS22L,MRAP2,NDUFAF4,NT5E,ORC3,PDSS2,PGM3,PM20D2,PNISR,PNRC1,POPDC3,POU3F2,PRDM1,PRDM13,PREP,PRSS35,QRSL1,RARS2,RIPPLY2,RNGTT,RRAGD,RTN4IP1,RWDD2A,SIM1,SLC35A1,SMIM8,SNAP91,SNX14,SOBP,SPACA1,SRSF12,SYNCRIP,TBX18,TPBG,TSTD3,UBE2J1,UBE3D,UFL1,USP45,ZNF292"
TCGA.A6.3808.01A	6	82910287	84372007	115	0.1046	NEUTRAL	NA	9	"DOPEY1,IBTK,ME1,PGM3,PRSS35,RWDD2A,SNAP91,TPBG,UBE3D"
TCGA.AA.3850	6	83092176	87827826	1287	-0.30135	NEUTRAL	NA	17	"CEP162,CGA,CYB5R4,DOPEY1,HTR1E,ME1,MRAP2,NT5E,PGM3,PRSS35,RIPPLY2,RWDD2A,SNAP91,SNX14,SYNCRIP,TBX18,UBE3D"
TCGA.F4.6854	6	83126193	86791306	1012	0.003	NEUTRAL	NA	15	"CEP162,CYB5R4,DOPEY1,ME1,MRAP2,NT5E,PGM3,PRSS35,RIPPLY2,RWDD2A,SNAP91,SNX14,SYNCRIP,TBX18,UBE3D"
TCGA.AA.A00N.01A	6	83748080	83775300	6	-0.475	NEUTRAL	NA	1	UBE3D
TCGA.CK.5914.01A	6	83754106	83767504	4	-0.132	NEUTRAL	NA	1	UBE3D
TCGA.DM.A28M.01A	6	83834376	170893340	4029	0.2622	NEUTRAL	NA	368	Too-Many
TCGA.AA.3685	6	83859730	83982350	30	-0.147	NEUTRAL	NA	4	"DOPEY1,ME1,PGM3,RWDD2A"
TCGA.AA.A00N.01A	6	83865643	83879973	9	0.3487	NEUTRAL	NA	2	"DOPEY1,PGM3"
TCGA.AG.A01N.01A	6	83884043	109311831	863	0.0856	NEUTRAL	NA	86	"AIM1,AKIRIN2,ANKRD6,ARMC2,ASCC3,ATG5,BACH2,BEND3,BVES,C6orf163,C6orf165,C6orf203,CASP8AP2,CCNC,CEP162,CGA,CNR1,COQ3,CYB5R4,EPHA7,FAXC,FBXL4,FHL5,FOXO3,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HACE1,HTR1E,KLHL32,LACE1,LIN28B,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MMS22L,MRAP2,NDUFAF4,NR2E1,NT5E,ORC3,OSTM1,PDSS2,PGM3,PM20D2,PNISR,PNRC1,POPDC3,POU3F2,PRDM1,PRDM13,PREP,PRSS35,QRSL1,RARS2,RIPPLY2,RNGTT,RRAGD,RTN4IP1,RWDD2A,SCML4,SEC63,SESN1,SIM1,SLC35A1,SMIM8,SNAP91,SNX14,SNX3,SOBP,SPACA1,SRSF12,SYNCRIP,TBX18,TSTD3,UBE2J1,UFL1,USP45,ZNF292"
TCGA.AG.A00C.01A	6	83889477	83921656	9	0.3339	NEUTRAL	NA	3	"ME1,PGM3,RWDD2A"
TCGA.AG.A01W.01A	6	83908323	84959987	110	0.21	NEUTRAL	NA	7	"CEP162,CYB5R4,ME1,MRAP2,PRSS35,RIPPLY2,SNAP91"
TCGA.AG.3909.01A	6	83921656	84883719	73	0.2214	NEUTRAL	NA	7	"CEP162,CYB5R4,ME1,MRAP2,PRSS35,RIPPLY2,SNAP91"
TCGA.AG.A00C.01A	6	83926167	86267637	123	-0.1155	NEUTRAL	NA	10	"CEP162,CYB5R4,ME1,MRAP2,NT5E,PRSS35,RIPPLY2,SNAP91,SNX14,TBX18"
TCGA.AA.3685	6	84014397	87041091	846	0.3545	NEUTRAL	NA	11	"CEP162,CYB5R4,ME1,MRAP2,NT5E,PRSS35,RIPPLY2,SNAP91,SNX14,SYNCRIP,TBX18"
TCGA.AA.A02H.01A	6	84061739	100960536	575	-0.264	NEUTRAL	NA	60	"AKIRIN2,ANKRD6,ASCC3,BACH2,C6orf163,C6orf165,CASP8AP2,CCNC,CEP162,CGA,CNR1,COQ3,CYB5R4,EPHA7,FAXC,FBXL4,FHL5,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,HTR1E,KLHL32,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MMS22L,MRAP2,NDUFAF4,NT5E,ORC3,PM20D2,PNISR,PNRC1,POU3F2,PRDM13,PRSS35,RARS2,RIPPLY2,RNGTT,RRAGD,SIM1,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TSTD3,UBE2J1,UFL1,USP45,ZNF292"
TCGA.G4.6303	6	84233830	170918030	27680	0	NEUTRAL	NA	364	Too-Many
TCGA.DM.A28K	6	84277036	84353462	25	-0.0534	NEUTRAL	NA	1	SNAP91
TCGA.CK.5914.01A	6	84417469	84573876	6	-0.3725	NEUTRAL	NA	3	"CYB5R4,RIPPLY2,SNAP91"
TCGA.AG.3909.01A	6	84884434	85472211	21	-0.4295	NEUTRAL	NA	2	"CEP162,TBX18"
TCGA.DM.A28K	6	84888121	129145355	12651	-0.0272	NEUTRAL	NA	165	Too-Many
TCGA.AA.3509.01A	6	84903267	90647831	348	-0.0433	NEUTRAL	NA	32	"AKIRIN2,ANKRD6,BACH2,C6orf163,C6orf165,CASP8AP2,CEP162,CGA,CNR1,GABRR1,GABRR2,GJA10,GJB7,HTR1E,LYRM2,MDN1,NT5E,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,UBE2J1,ZNF292"
TCGA.AZ.4684.01A	6	84903267	90647831	348	0.1102	NEUTRAL	NA	32	"AKIRIN2,ANKRD6,BACH2,C6orf163,C6orf165,CASP8AP2,CEP162,CGA,CNR1,GABRR1,GABRR2,GJA10,GJB7,HTR1E,LYRM2,MDN1,NT5E,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,UBE2J1,ZNF292"
TCGA.AA.A02K.01A	6	84911370	109788816	865	0.0294	NEUTRAL	NA	85	"AIM1,AKIRIN2,ANKRD6,ARMC2,ASCC3,ATG5,BACH2,BEND3,BVES,C6orf163,C6orf165,C6orf203,CASP8AP2,CCNC,CD164,CEP162,CEP57L1,CGA,CNR1,COQ3,EPHA7,FAXC,FBXL4,FHL5,FOXO3,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HACE1,HTR1E,KLHL32,LACE1,LIN28B,LOC100996634,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,MICAL1,MMS22L,NDUFAF4,NR2E1,NT5E,ORC3,OSTM1,PDSS2,PM20D2,PNISR,PNRC1,POPDC3,POU3F2,PPIL6,PRDM1,PRDM13,PREP,QRSL1,RARS2,RNGTT,RRAGD,RTN4IP1,SCML4,SEC63,SESN1,SIM1,SLC35A1,SMIM8,SMPD2,SNX14,SNX3,SOBP,SPACA1,SRSF12,SYNCRIP,TBX18,TSTD3,UBE2J1,UFL1,USP45,ZBTB24,ZNF292"
TCGA.AG.A01W.01A	6	84961293	84992711	9	-0.3171	NEUTRAL	NA	0	None
TCGA.AA.3930.01A	6	85446363	85473556	8	-0.3071	NEUTRAL	NA	1	TBX18
TCGA.A6.3808.01A	6	85446363	90604191	335	-0.1534	NEUTRAL	NA	30	"AKIRIN2,ANKRD6,C6orf163,C6orf165,CASP8AP2,CGA,CNR1,GABRR1,GABRR2,GJA10,GJB7,HTR1E,LYRM2,MDN1,NT5E,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,UBE2J1,ZNF292"
TCGA.AG.A01W.01A	6	85503141	90429183	240	0.0886	NEUTRAL	NA	27	"AKIRIN2,ANKRD6,C6orf163,C6orf165,CGA,CNR1,GABRR1,GABRR2,GJB7,HTR1E,LYRM2,MDN1,NT5E,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SNX14,SPACA1,SRSF12,SYNCRIP,UBE2J1,ZNF292"
TCGA.AA.3867	6	85614442	85757956	78	0.0135	NEUTRAL	NA	0	None
TCGA.AA.3867	6	85767265	92014848	1870	-0.032	NEUTRAL	NA	31	"AKIRIN2,ANKRD6,BACH2,C6orf163,C6orf165,CASP8AP2,CGA,CNR1,GABRR1,GABRR2,GJA10,GJB7,HTR1E,LYRM2,MAP3K7,MDN1,NT5E,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SNX14,SPACA1,SRSF12,SYNCRIP,UBE2J1,ZNF292"
TCGA.AA.3930.01A	6	86159871	101073021	533	0.1607	NEUTRAL	NA	52	"AKIRIN2,ANKRD6,ASCC3,BACH2,C6orf163,C6orf165,CASP8AP2,CCNC,CGA,CNR1,COQ3,EPHA7,FAXC,FBXL4,FHL5,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,HTR1E,KLHL32,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,MMS22L,NDUFAF4,NT5E,ORC3,PM20D2,PNISR,PNRC1,POU3F2,PRDM13,RARS2,RNGTT,RRAGD,SIM1,SLC35A1,SMIM8,SNX14,SPACA1,SRSF12,SYNCRIP,TSTD3,UBE2J1,UFL1,USP45,ZNF292"
TCGA.AG.3611.01A	6	86176741	93964313	311	-0.0828	NEUTRAL	NA	32	"AKIRIN2,ANKRD6,BACH2,C6orf163,C6orf165,CASP8AP2,CGA,CNR1,EPHA7,GABRR1,GABRR2,GJA10,GJB7,HTR1E,LYRM2,MAP3K7,MDN1,NT5E,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SNX14,SPACA1,SRSF12,SYNCRIP,UBE2J1,ZNF292"
TCGA.AA.3967.01A	6	86237929	91263150	314	-0.2616	NEUTRAL	NA	30	"AKIRIN2,ANKRD6,BACH2,C6orf163,C6orf165,CASP8AP2,CGA,CNR1,GABRR1,GABRR2,GJA10,GJB7,HTR1E,LYRM2,MAP3K7,MDN1,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SNX14,SPACA1,SRSF12,SYNCRIP,UBE2J1,ZNF292"
TCGA.CK.5914.01A	6	86248473	86333648	19	0.1969	NEUTRAL	NA	2	"SNX14,SYNCRIP"
TCGA.AG.3909.01A	6	86267637	86333648	11	-0.1178	NEUTRAL	NA	2	"SNX14,SYNCRIP"
TCGA.AG.A00C.01A	6	86274994	88187128	44	0.1796	NEUTRAL	NA	10	"C6orf163,C6orf165,CGA,GJB7,HTR1E,SLC35A1,SMIM8,SNX14,SYNCRIP,ZNF292"
TCGA.AG.4009.01A	6	86281805	87970371	26	-0.4686	NEUTRAL	NA	5	"CGA,HTR1E,SNX14,SYNCRIP,ZNF292"
TCGA.CK.5914.01A	6	86445495	88109064	23	0.3534	NEUTRAL	NA	6	"C6orf163,CGA,GJB7,HTR1E,SMIM8,ZNF292"
TCGA.AG.3909.01A	6	86445495	88218721	36	-0.2019	NEUTRAL	NA	8	"C6orf163,C6orf165,CGA,GJB7,HTR1E,SLC35A1,SMIM8,ZNF292"
TCGA.AA.3968	6	86476483	162590017	23568	-0.0012	NEUTRAL	NA	320	Too-Many
TCGA.AA.3685	6	87044165	87125941	34	0.0266	NEUTRAL	NA	0	None
TCGA.DC.6155	6	87086121	162340949	23249	0.0239	NEUTRAL	NA	320	Too-Many
TCGA.AA.3685	6	87126860	87190472	22	0.3393	NEUTRAL	NA	0	None
TCGA.AA.3685	6	87199926	87728161	117	-0.1934	NEUTRAL	NA	1	HTR1E
TCGA.DM.A28H	6	87640199	162672820	23319	-0.0159	NEUTRAL	NA	320	Too-Many
TCGA.AA.3941	6	87721706	89036836	388	-0.2622	NEUTRAL	NA	13	"AKIRIN2,C6orf163,C6orf165,CGA,CNR1,GJB7,HTR1E,ORC3,RARS2,SLC35A1,SMIM8,SPACA1,ZNF292"
TCGA.AA.3685	6	87735224	87813842	24	0.3743	NEUTRAL	NA	1	CGA
TCGA.AA.3982	6	87750127	90662822	858	0.136	NEUTRAL	NA	26	"AKIRIN2,ANKRD6,BACH2,C6orf163,C6orf165,CASP8AP2,CGA,CNR1,GABRR1,GABRR2,GJA10,GJB7,LYRM2,MDN1,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SPACA1,SRSF12,UBE2J1,ZNF292"
TCGA.AA.3685	6	87814122	87825308	6	-0.3712	NEUTRAL	NA	0	None
TCGA.AA.3685	6	87827826	90262340	718	0.3564	NEUTRAL	NA	20	"AKIRIN2,ANKRD6,C6orf163,C6orf165,CNR1,GABRR1,GABRR2,GJB7,ORC3,PM20D2,PNRC1,RARS2,RNGTT,RRAGD,SLC35A1,SMIM8,SPACA1,SRSF12,UBE2J1,ZNF292"
TCGA.AA.3850	6	87830278	88147801	84	0.25465	NEUTRAL	NA	5	"C6orf163,C6orf165,GJB7,SMIM8,ZNF292"
TCGA.AA.3844	6	87830278	88555066	178	0.0267	NEUTRAL	NA	9	"AKIRIN2,C6orf163,C6orf165,GJB7,ORC3,RARS2,SLC35A1,SMIM8,ZNF292"
TCGA.AG.4009.01A	6	87993942	88767285	67	0.0352	NEUTRAL	NA	9	"AKIRIN2,C6orf163,C6orf165,GJB7,ORC3,RARS2,SLC35A1,SMIM8,SPACA1"
TCGA.CK.5914.01A	6	88136217	88187128	7	-0.2067	NEUTRAL	NA	2	"C6orf165,SLC35A1"
TCGA.AA.3850	6	88171536	88626152	119	0.32085	NEUTRAL	NA	5	"AKIRIN2,C6orf165,ORC3,RARS2,SLC35A1"
TCGA.AG.A00C.01A	6	88210187	88385517	46	-0.1802	NEUTRAL	NA	4	"AKIRIN2,ORC3,RARS2,SLC35A1"
TCGA.AG.3909.01A	6	88221110	88391291	43	0.251	NEUTRAL	NA	4	"AKIRIN2,ORC3,RARS2,SLC35A1"
TCGA.F4.6460	6	88226640	88487683	47	-0.1835	NEUTRAL	NA	3	"AKIRIN2,ORC3,RARS2"
TCGA.CL.4957	6	88270946	115208741	7937	-0.39	NEUTRAL	NA	97	"AIM1,AK9,AKIRIN2,AMD1,ANKRD6,ARMC2,ASCC3,ATG5,BACH2,BEND3,BVES,C6orf203,CASP8AP2,CCNC,CD164,CDC40,CDK19,CEP57L1,CNR1,COQ3,DDO,EPHA7,FAM229B,FAXC,FBXL4,FHL5,FIG4,FOXO3,FUT9,FYN,GABRR1,GABRR2,GJA10,GPR6,GPR63,GRIK2,GTF3C6,HACE1,HDAC2,HS3ST5,KIAA1919,KLHL32,LACE1,LAMA4,LIN28B,LOC100996634,LYRM2,MANEA,MAP3K7,MARCKS,MCHR2,MDN1,METTL24,MICAL1,MMS22L,NDUFAF4,NR2E1,ORC3,OSTM1,PDSS2,PM20D2,PNISR,PNRC1,POPDC3,POU3F2,PPIL6,PRDM1,PRDM13,PREP,QRSL1,RARS2,REV3L,RFPL4B,RNGTT,RPF2,RRAGD,RTN4IP1,SCML4,SEC63,SESN1,SIM1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,SPACA1,SRSF12,TRAF3IP2,TSTD3,TUBE1,UBE2J1,UFL1,USP45,WASF1,WISP3,ZBTB24"
TCGA.CK.5914.01A	6	88304012	88326000	8	-0.5038	NEUTRAL	NA	1	ORC3
TCGA.CK.5914.01A	6	88331054	88757623	17	0.2565	NEUTRAL	NA	3	"AKIRIN2,ORC3,SPACA1"
TCGA.AG.A00C.01A	6	88387494	88775878	8	0.2476	NEUTRAL	NA	2	"AKIRIN2,SPACA1"
TCGA.F4.6460	6	88489415	89336198	335	0.1993	NEUTRAL	NA	3	"CNR1,RNGTT,SPACA1"
TCGA.AA.3844	6	88562206	89068631	177	-0.0677	NEUTRAL	NA	2	"CNR1,SPACA1"
TCGA.AA.3850	6	88626860	89036836	146	-0.06405	NEUTRAL	NA	2	"CNR1,SPACA1"
TCGA.CM.5868	6	88629121	112972696	7182	-0.3905	NEUTRAL	NA	91	"AIM1,AK9,AMD1,ANKRD6,ARMC2,ASCC3,ATG5,BACH2,BEND3,BVES,C6orf203,CASP8AP2,CCNC,CD164,CDC40,CDK19,CEP57L1,CNR1,COQ3,DDO,EPHA7,FAM229B,FAXC,FBXL4,FHL5,FIG4,FOXO3,FUT9,FYN,GABRR1,GABRR2,GJA10,GPR6,GPR63,GRIK2,GTF3C6,HACE1,KIAA1919,KLHL32,LACE1,LAMA4,LIN28B,LOC100996634,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,METTL24,MICAL1,MMS22L,NDUFAF4,NR2E1,OSTM1,PDSS2,PM20D2,PNISR,PNRC1,POPDC3,POU3F2,PPIL6,PRDM1,PRDM13,PREP,QRSL1,REV3L,RFPL4B,RNGTT,RPF2,RRAGD,RTN4IP1,SCML4,SEC63,SESN1,SIM1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,SPACA1,SRSF12,TRAF3IP2,TSTD3,TUBE1,UBE2J1,UFL1,USP45,WASF1,WISP3,ZBTB24"
TCGA.CK.5914.01A	6	88763591	88854818	9	-0.4413	NEUTRAL	NA	2	"CNR1,SPACA1"
TCGA.AG.4009.01A	6	88768384	88854818	7	-0.3502	NEUTRAL	NA	2	"CNR1,SPACA1"
TCGA.AG.A00C.01A	6	88853563	89600187	12	-0.2449	NEUTRAL	NA	2	"CNR1,RNGTT"
TCGA.AG.3909.01A	6	88853563	89672996	18	0.2266	NEUTRAL	NA	2	"CNR1,RNGTT"
TCGA.DM.A1D4	6	88867487	170918030	26387	0.0092	NEUTRAL	NA	342	Too-Many
TCGA.AA.3844	6	89068945	89180742	45	-0.4693	NEUTRAL	NA	0	None
TCGA.AA.3850	6	89164432	89325683	90	0.21095	NEUTRAL	NA	1	RNGTT
TCGA.AA.3941	6	89164432	91408833	742	-0.3161	NEUTRAL	NA	15	"ANKRD6,BACH2,CASP8AP2,GABRR1,GABRR2,GJA10,LYRM2,MAP3K7,MDN1,PM20D2,PNRC1,RNGTT,RRAGD,SRSF12,UBE2J1"
TCGA.AA.3844	6	89181413	90723905	448	0.0372	NEUTRAL	NA	14	"ANKRD6,BACH2,CASP8AP2,GABRR1,GABRR2,GJA10,LYRM2,MDN1,PM20D2,PNRC1,RNGTT,RRAGD,SRSF12,UBE2J1"
TCGA.AG.4009.01A	6	89322391	89616035	12	-0.0255	NEUTRAL	NA	1	RNGTT
TCGA.F4.6460	6	89339502	151247866	18609	-0.1489	NEUTRAL	NA	255	Too-Many
TCGA.AA.3850	6	89339533	90734175	372	0.25725	NEUTRAL	NA	14	"ANKRD6,BACH2,CASP8AP2,GABRR1,GABRR2,GJA10,LYRM2,MDN1,PM20D2,PNRC1,RNGTT,RRAGD,SRSF12,UBE2J1"
TCGA.AG.A00C.01A	6	89871454	90047947	25	-0.2021	NEUTRAL	NA	4	"GABRR1,GABRR2,PM20D2,UBE2J1"
TCGA.AG.4009.01A	6	89871454	105564528	430	-0.0888	NEUTRAL	NA	37	"ANKRD6,ASCC3,BACH2,BVES,CASP8AP2,CCNC,COQ3,EPHA7,FAXC,FBXL4,FHL5,FUT9,GABRR1,GABRR2,GJA10,GPR63,GRIK2,HACE1,KLHL32,LIN28B,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,MMS22L,NDUFAF4,PM20D2,PNISR,POU3F2,PRDM13,RRAGD,SIM1,TSTD3,UBE2J1,UFL1,USP45"
TCGA.AA.A010.01A	6	89888471	89967401	11	0.2639	NEUTRAL	NA	2	"GABRR1,GABRR2"
TCGA.AA.A010.01A	6	90024720	90096977	13	-0.3924	NEUTRAL	NA	3	"GABRR2,RRAGD,UBE2J1"
TCGA.F4.6854	6	90033735	98580445	2534	-0.0036	NEUTRAL	NA	18	"ANKRD6,BACH2,CASP8AP2,EPHA7,FHL5,FUT9,GJA10,GPR63,KLHL32,LYRM2,MANEA,MAP3K7,MDN1,MMS22L,NDUFAF4,RRAGD,UBE2J1,UFL1"
TCGA.AA.A00N.01A	6	90039376	90121548	14	-0.5127	NEUTRAL	NA	2	"RRAGD,UBE2J1"
TCGA.AG.A00C.01A	6	90051995	90276654	9	0.2716	NEUTRAL	NA	3	"ANKRD6,RRAGD,UBE2J1"
TCGA.AA.3556	6	90204152	145017981	16194	0.0053	NEUTRAL	NA	217	Too-Many
TCGA.AA.3685	6	90265664	90374282	35	-0.1082	NEUTRAL	NA	3	"ANKRD6,LYRM2,MDN1"
TCGA.AG.A00C.01A	6	90305597	99771281	246	-0.2114	NEUTRAL	NA	19	"ANKRD6,BACH2,CASP8AP2,EPHA7,FAXC,FBXL4,FHL5,FUT9,GJA10,GPR63,KLHL32,LYRM2,MANEA,MAP3K7,MDN1,MMS22L,NDUFAF4,POU3F2,UFL1"
TCGA.CK.5914.01A	6	90334216	90359693	12	-0.3296	NEUTRAL	NA	3	"ANKRD6,LYRM2,MDN1"
TCGA.AA.A00N.01A	6	90334216	90362684	15	0.0933	NEUTRAL	NA	3	"ANKRD6,LYRM2,MDN1"
TCGA.AA.A00Q.01A	6	90361868	90377685	12	-0.4805	NEUTRAL	NA	1	MDN1
TCGA.AA.A010.01A	6	90362684	90380586	12	0.1489	NEUTRAL	NA	1	MDN1
TCGA.AA.A00Q.01A	6	90380586	160157214	2557	0.0263	NEUTRAL	NA	283	Too-Many
TCGA.AA.A00D.01A	6	90382928	93979148	114	-0.2661	NEUTRAL	NA	6	"BACH2,CASP8AP2,EPHA7,GJA10,MAP3K7,MDN1"
TCGA.AA.3685	6	90387232	90841731	140	0.235	NEUTRAL	NA	4	"BACH2,CASP8AP2,GJA10,MDN1"
TCGA.AA.A010.01A	6	90410337	90425345	12	0.346	NEUTRAL	NA	1	MDN1
TCGA.AA.A010.01A	6	90426332	90448018	11	-0.2555	NEUTRAL	NA	1	MDN1
TCGA.AG.A01W.01A	6	90430881	90440585	7	-0.5066	NEUTRAL	NA	1	MDN1
TCGA.AG.A01W.01A	6	90441855	90515617	53	0.0927	NEUTRAL	NA	1	MDN1
TCGA.CK.5914.01A	6	90453243	91281377	60	0.3553	NEUTRAL	NA	5	"BACH2,CASP8AP2,GJA10,MAP3K7,MDN1"
TCGA.AA.A01C.01A	6	90489870	90604191	21	-0.3544	NEUTRAL	NA	3	"CASP8AP2,GJA10,MDN1"
TCGA.AG.A01W.01A	6	90528038	90569717	16	-0.0841	NEUTRAL	NA	2	"CASP8AP2,MDN1"
TCGA.AA.A00A.01A	6	90529178	91257724	17	-0.392	NEUTRAL	NA	5	"BACH2,CASP8AP2,GJA10,MAP3K7,MDN1"
TCGA.AA.A00N.01A	6	90556264	90604191	10	-0.0872	NEUTRAL	NA	2	"CASP8AP2,GJA10"
TCGA.AG.3909.01A	6	90580958	90604191	3	-0.1376	NEUTRAL	NA	2	"CASP8AP2,GJA10"
TCGA.AG.A01W.01A	6	90628585	101008304	193	0.2127	NEUTRAL	NA	23	"ASCC3,BACH2,CCNC,COQ3,EPHA7,FAXC,FBXL4,FHL5,FUT9,GPR63,KLHL32,MANEA,MAP3K7,MCHR2,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,SIM1,TSTD3,UFL1,USP45"
TCGA.DC.5869	6	90638962	170918030	25814	0.3269	NEUTRAL	NA	328	Too-Many
TCGA.AA.A01C.01A	6	90642145	106960186	309	0.1909	NEUTRAL	NA	32	"AIM1,ASCC3,ATG5,BACH2,BVES,CCNC,COQ3,EPHA7,FAXC,FBXL4,FHL5,FUT9,GPR63,GRIK2,HACE1,KLHL32,LIN28B,MANEA,MAP3K7,MCHR2,MMS22L,NDUFAF4,PNISR,POPDC3,POU3F2,PRDM1,PRDM13,PREP,SIM1,TSTD3,UFL1,USP45"
TCGA.AA.3982	6	90663435	91106978	139	-0.1565	NEUTRAL	NA	1	BACH2
TCGA.AA.A01K.01A	6	90718281	107391379	346	0.2033	NEUTRAL	NA	36	"AIM1,ASCC3,ATG5,BACH2,BEND3,BVES,C6orf203,CCNC,COQ3,EPHA7,FAXC,FBXL4,FHL5,FUT9,GPR63,GRIK2,HACE1,KLHL32,LIN28B,MANEA,MAP3K7,MCHR2,MMS22L,NDUFAF4,PNISR,POPDC3,POU3F2,PRDM1,PRDM13,PREP,QRSL1,RTN4IP1,SIM1,TSTD3,UFL1,USP45"
TCGA.A6.3810.01A	6	90718281	111208655	659	0.1436	NEUTRAL	NA	64	"AIM1,AK9,AMD1,ARMC2,ASCC3,ATG5,BACH2,BEND3,BVES,C6orf203,CCNC,CD164,CDC40,CDK19,CEP57L1,COQ3,DDO,EPHA7,FAXC,FBXL4,FHL5,FIG4,FOXO3,FUT9,GPR6,GPR63,GRIK2,HACE1,KLHL32,LACE1,LIN28B,LOC100996634,MANEA,MAP3K7,MCHR2,METTL24,MICAL1,MMS22L,NDUFAF4,NR2E1,OSTM1,PDSS2,PNISR,POPDC3,POU3F2,PPIL6,PRDM1,PRDM13,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SESN1,SIM1,SLC22A16,SMPD2,SNX3,SOBP,TSTD3,UFL1,USP45,WASF1,ZBTB24"
TCGA.AA.3844	6	90730437	91165142	162	-0.222	NEUTRAL	NA	1	BACH2
TCGA.AA.3685	6	90844120	91130877	99	-0.2572	NEUTRAL	NA	1	BACH2
TCGA.AG.3883	6	90868065	91106314	72	-0.0688	NEUTRAL	NA	1	BACH2
TCGA.AA.3850	6	90916344	91217547	161	0.16455	NEUTRAL	NA	1	BACH2
TCGA.AA.3982	6	91106993	91212134	93	0.1316	NEUTRAL	NA	0	None
TCGA.AG.3883	6	91116344	107254888	4787	0.175	NEUTRAL	NA	33	"AIM1,ASCC3,ATG5,BVES,CCNC,COQ3,EPHA7,FAXC,FBXL4,FHL5,FUT9,GPR63,GRIK2,HACE1,KLHL32,LIN28B,MANEA,MAP3K7,MCHR2,MMS22L,NDUFAF4,PNISR,POPDC3,POU3F2,PRDM1,PRDM13,PREP,QRSL1,RTN4IP1,SIM1,TSTD3,UFL1,USP45"
TCGA.G4.6302	6	91128678	170918030	25699	0.0084	NEUTRAL	NA	327	Too-Many
TCGA.AA.3685	6	91131745	92688619	581	0.2043	NEUTRAL	NA	1	MAP3K7
TCGA.AA.3844	6	91165621	91212134	52	0.0246	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	6	91228906	93953097	16	0.1147	NEUTRAL	NA	2	"EPHA7,MAP3K7"
TCGA.AA.A00N.01A	6	91254231	94067933	26	0.1369	NEUTRAL	NA	2	"EPHA7,MAP3K7"
TCGA.AG.3909.01A	6	91254231	109665279	461	0.0626	NEUTRAL	NA	48	"AIM1,ARMC2,ASCC3,ATG5,BEND3,BVES,C6orf203,CCNC,CEP57L1,COQ3,EPHA7,FAXC,FBXL4,FHL5,FOXO3,FUT9,GPR63,GRIK2,HACE1,KLHL32,LACE1,LIN28B,LOC100996634,MANEA,MAP3K7,MCHR2,MMS22L,NDUFAF4,NR2E1,OSTM1,PDSS2,PNISR,POPDC3,POU3F2,PRDM1,PRDM13,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SESN1,SIM1,SNX3,SOBP,TSTD3,UFL1,USP45"
TCGA.AA.A00A.01A	6	91260131	91296446	9	-0.0215	NEUTRAL	NA	1	MAP3K7
TCGA.AA.3867	6	92016770	97846570	1691	-0.3858	NEUTRAL	NA	9	"EPHA7,FHL5,FUT9,GPR63,KLHL32,MANEA,MMS22L,NDUFAF4,UFL1"
TCGA.AY.4070	6	92270820	95175799	925	-0.2326	NEUTRAL	NA	1	EPHA7
TCGA.AA.3685	6	92691552	95175799	805	-0.2344	NEUTRAL	NA	1	EPHA7
TCGA.5M.AAT5	6	93567261	93598210	14	-0.4129	NEUTRAL	NA	0	None
TCGA.5M.AAT5	6	93602076	170918030	24839	0.0411	NEUTRAL	NA	326	Too-Many
TCGA.AA.A01Q.01A	6	93953097	97001120	44	-0.4736	NEUTRAL	NA	4	"EPHA7,FUT9,MANEA,UFL1"
TCGA.AA.A010.01A	6	93954989	96052642	19	-0.5078	NEUTRAL	NA	2	"EPHA7,MANEA"
TCGA.AA.A00D.01A	6	94124353	110944443	545	-0.0698	NEUTRAL	NA	61	"AIM1,AK9,ARMC2,ASCC3,ATG5,BEND3,BVES,C6orf203,CCNC,CD164,CDC40,CDK19,CEP57L1,COQ3,DDO,EPHA7,FAXC,FBXL4,FHL5,FIG4,FOXO3,FUT9,GPR6,GPR63,GRIK2,HACE1,KLHL32,LACE1,LIN28B,LOC100996634,MANEA,MCHR2,METTL24,MICAL1,MMS22L,NDUFAF4,NR2E1,OSTM1,PDSS2,PNISR,POPDC3,POU3F2,PPIL6,PRDM1,PRDM13,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SESN1,SIM1,SLC22A16,SMPD2,SNX3,SOBP,TSTD3,UFL1,USP45,WASF1,ZBTB24"
TCGA.AY.A71X	6	94716626	102969889	2230	0.0385	NEUTRAL	NA	21	"ASCC3,CCNC,COQ3,FAXC,FBXL4,FHL5,FUT9,GPR63,GRIK2,KLHL32,MANEA,MCHR2,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,SIM1,TSTD3,UFL1,USP45"
TCGA.AA.3685	6	95179911	101834490	1751	0.2182	NEUTRAL	NA	20	"ASCC3,CCNC,COQ3,FAXC,FBXL4,FHL5,FUT9,GPR63,KLHL32,MANEA,MCHR2,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,SIM1,TSTD3,UFL1,USP45"
TCGA.AY.4070	6	95179911	153640136	17531	0.0922	NEUTRAL	NA	251	Too-Many
TCGA.AG.3893	6	95566985	102405009	1803	0.0106	NEUTRAL	NA	21	"ASCC3,CCNC,COQ3,FAXC,FBXL4,FHL5,FUT9,GPR63,GRIK2,KLHL32,MANEA,MCHR2,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,SIM1,TSTD3,UFL1,USP45"
TCGA.AG.3611.01A	6	96034309	99893693	105	-0.2061	NEUTRAL	NA	14	"COQ3,FAXC,FBXL4,FHL5,FUT9,GPR63,KLHL32,MANEA,MMS22L,NDUFAF4,PNISR,POU3F2,UFL1,USP45"
TCGA.AA.A00N.01A	6	96044576	100061642	139	0.1093	NEUTRAL	NA	17	"CCNC,COQ3,FAXC,FBXL4,FHL5,FUT9,GPR63,KLHL32,MANEA,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,TSTD3,UFL1,USP45"
TCGA.AA.A00L.01A	6	96044576	133070812	1355	-0.1473	NEUTRAL	NA	158	Too-Many
TCGA.AA.A010.01A	6	96053607	98472356	71	0.2112	NEUTRAL	NA	8	"FHL5,FUT9,GPR63,KLHL32,MANEA,MMS22L,NDUFAF4,UFL1"
TCGA.AA.A01T	6	96365165	161733815	20229	0.0423	NEUTRAL	NA	289	Too-Many
TCGA.AZ.4682	6	96380001	96542277	64	-0.3685	NEUTRAL	NA	1	FUT9
TCGA.AA.3982	6	96487568	96652370	67	-0.1204	NEUTRAL	NA	1	FUT9
TCGA.AZ.4682	6	96545448	103859209	1949	0.2945	NEUTRAL	NA	20	"ASCC3,CCNC,COQ3,FAXC,FBXL4,FHL5,FUT9,GPR63,GRIK2,KLHL32,MCHR2,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,SIM1,TSTD3,UFL1,USP45"
TCGA.CK.5914.01A	6	96651055	100965830	156	0.2803	NEUTRAL	NA	19	"ASCC3,CCNC,COQ3,FAXC,FBXL4,FHL5,FUT9,GPR63,KLHL32,MCHR2,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,SIM1,TSTD3,UFL1,USP45"
TCGA.AA.3531	6	96658669	170918030	23940	0.0221	NEUTRAL	NA	324	Too-Many
TCGA.AA.3982	6	96675264	97102808	115	-0.0418	NEUTRAL	NA	2	"FHL5,UFL1"
TCGA.AG.A023.01A	6	96969691	107035502	284	0.0836	NEUTRAL	NA	28	"AIM1,ASCC3,ATG5,BVES,CCNC,COQ3,FAXC,FBXL4,FHL5,GPR63,GRIK2,HACE1,KLHL32,LIN28B,MCHR2,MMS22L,NDUFAF4,PNISR,POPDC3,POU3F2,PRDM1,PRDM13,PREP,RTN4IP1,SIM1,TSTD3,UFL1,USP45"
TCGA.AA.3850	6	97008677	97112371	42	-0.13875	NEUTRAL	NA	1	FHL5
TCGA.AA.A01Q.01A	6	97051453	134491366	1366	0.0717	NEUTRAL	NA	162	Too-Many
TCGA.D5.6932	6	97099219	102222197	1392	0.0425	NEUTRAL	NA	17	"ASCC3,CCNC,COQ3,FAXC,FBXL4,GPR63,GRIK2,KLHL32,MCHR2,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,SIM1,TSTD3,USP45"
TCGA.F5.6811.01A	6	97107841	170734476	3495	0.0421	NEUTRAL	NA	318	Too-Many
TCGA.AA.3982	6	97118860	97835326	198	-0.1348	NEUTRAL	NA	4	"GPR63,KLHL32,MMS22L,NDUFAF4"
TCGA.AA.3850	6	97129084	97846570	195	-0.18895	NEUTRAL	NA	4	"GPR63,KLHL32,MMS22L,NDUFAF4"
TCGA.AA.A00F.01A	6	97414869	99923966	76	0.0689	NEUTRAL	NA	8	"COQ3,FAXC,FBXL4,KLHL32,MMS22L,PNISR,POU3F2,USP45"
TCGA.AA.3509.01A	6	97702422	100957787	91	0.0711	NEUTRAL	NA	13	"ASCC3,CCNC,COQ3,FAXC,FBXL4,MCHR2,MMS22L,PNISR,POU3F2,PRDM13,SIM1,TSTD3,USP45"
TCGA.AZ.4684.01A	6	97702422	100957787	91	0.2473	NEUTRAL	NA	13	"ASCC3,CCNC,COQ3,FAXC,FBXL4,MCHR2,MMS22L,PNISR,POU3F2,PRDM13,SIM1,TSTD3,USP45"
TCGA.AA.3966	6	97756289	170918030	23598	0.2772	NEUTRAL	NA	317	Too-Many
TCGA.AA.3867	6	97885073	104868276	1898	-0.2667	NEUTRAL	NA	13	"ASCC3,CCNC,COQ3,FAXC,FBXL4,GRIK2,MCHR2,PNISR,POU3F2,PRDM13,SIM1,TSTD3,USP45"
TCGA.AA.3949	6	97887473	108292258	3064	-0.0292	NEUTRAL	NA	29	"AIM1,ASCC3,ATG5,BEND3,BVES,C6orf203,CCNC,COQ3,FAXC,FBXL4,GRIK2,HACE1,LIN28B,MCHR2,PDSS2,PNISR,POPDC3,POU3F2,PRDM1,PRDM13,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SIM1,SOBP,TSTD3,USP45"
TCGA.EI.6881	6	97941358	98908957	197	0.3399	NEUTRAL	NA	0	None
TCGA.EI.6881	6	98924532	170918030	23375	0.0312	NEUTRAL	NA	317	Too-Many
TCGA.AA.3982	6	99135471	101402596	674	-0.1332	NEUTRAL	NA	12	"ASCC3,CCNC,COQ3,FAXC,FBXL4,MCHR2,PNISR,POU3F2,PRDM13,SIM1,TSTD3,USP45"
TCGA.AA.3844	6	99192972	100950180	581	-0.164	NEUTRAL	NA	11	"CCNC,COQ3,FAXC,FBXL4,MCHR2,PNISR,POU3F2,PRDM13,SIM1,TSTD3,USP45"
TCGA.AA.3850	6	99195547	100740292	507	-0.09325	NEUTRAL	NA	10	"CCNC,COQ3,FAXC,FBXL4,MCHR2,PNISR,POU3F2,PRDM13,TSTD3,USP45"
TCGA.AA.3967.01A	6	99282739	122734643	928	-0.2556	NEUTRAL	NA	100	"AIM1,AK9,AMD1,ARMC2,ASCC3,ASF1A,ATG5,BEND3,BVES,C6orf203,CCNC,CD164,CDC40,CDK19,CEP57L1,CEP85L,COL10A1,COQ3,DCBLD1,DDO,DSE,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FAXC,FBXL4,FIG4,FOXO3,FRK,FYN,GJA1,GOPC,GPR6,GPRC6A,GRIK2,GTF3C6,HACE1,HDAC2,HS3ST5,HSF2,KIAA1919,KPNA5,LACE1,LAMA4,LIN28B,LOC100996634,MAN1A1,MARCKS,MCHR2,MCM9,METTL24,MICAL1,NR2E1,NT5DC1,NUS1,OSTM1,PDSS2,PLN,PNISR,POPDC3,POU3F2,PPIL6,PRDM1,PRDM13,PREP,QRSL1,REV3L,RFPL4B,RFX6,ROS1,RPF2,RSPH4A,RTN4IP1,RWDD1,SCML4,SEC63,SESN1,SIM1,SLC16A10,SLC22A16,SLC35F1,SMPD2,SNX3,SOBP,TBC1D32,TRAF3IP2,TRAPPC3L,TSPYL1,TSPYL4,TSTD3,TUBE1,USP45,VGLL2,WASF1,WISP3,ZBTB24,ZUFSP"
TCGA.AA.A010.01A	6	99328368	99771281	8	-0.1946	NEUTRAL	NA	2	"FAXC,FBXL4"
TCGA.AG.A00C.01A	6	99781186	99841903	10	0.2168	NEUTRAL	NA	2	"COQ3,FAXC"
TCGA.AA.A010.01A	6	99841903	101163277	88	0.1159	NEUTRAL	NA	9	"ASCC3,CCNC,COQ3,MCHR2,PNISR,PRDM13,SIM1,TSTD3,USP45"
TCGA.AG.A00C.01A	6	99848379	99936530	23	-0.2271	NEUTRAL	NA	2	"PNISR,USP45"
TCGA.AG.3611.01A	6	99912448	99936530	8	0.1563	NEUTRAL	NA	1	USP45
TCGA.AG.3611.01A	6	99951592	100868618	23	-0.155	NEUTRAL	NA	6	"CCNC,MCHR2,PRDM13,SIM1,TSTD3,USP45"
TCGA.AG.A00C.01A	6	99991371	107955661	215	-0.1036	NEUTRAL	NA	20	"AIM1,ASCC3,ATG5,BEND3,BVES,C6orf203,CCNC,GRIK2,HACE1,LIN28B,MCHR2,PDSS2,POPDC3,PRDM1,PRDM13,PREP,QRSL1,RTN4IP1,SIM1,SOBP"
TCGA.AA.A00F.01A	6	99991371	109774804	334	-0.1567	NEUTRAL	NA	35	"AIM1,ARMC2,ASCC3,ATG5,BEND3,BVES,C6orf203,CCNC,CD164,CEP57L1,FOXO3,GRIK2,HACE1,LACE1,LIN28B,LOC100996634,MCHR2,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PRDM13,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SESN1,SIM1,SMPD2,SNX3,SOBP"
TCGA.EI.7002	6	100236325	128411971	7927	0.0169	NEUTRAL	NA	114	Too-Many
TCGA.AG.3591	6	100698563	106560434	1628	0.1828	NEUTRAL	NA	9	"ASCC3,BVES,GRIK2,HACE1,LIN28B,POPDC3,PRDM1,PREP,SIM1"
TCGA.AA.3850	6	100801519	101402596	135	-0.24135	NEUTRAL	NA	2	"ASCC3,SIM1"
TCGA.AG.3611.01A	6	100957223	107088651	154	-0.1918	NEUTRAL	NA	12	"AIM1,ASCC3,ATG5,BVES,GRIK2,HACE1,LIN28B,POPDC3,PRDM1,PREP,QRSL1,RTN4IP1"
TCGA.AA.A02H.01A	6	100964015	105192345	58	0.2587	NEUTRAL	NA	3	"ASCC3,GRIK2,HACE1"
TCGA.AA.3930.01A	6	101075419	105224841	55	-0.1127	NEUTRAL	NA	3	"ASCC3,GRIK2,HACE1"
TCGA.AA.A010.01A	6	101306955	105300118	43	0.1582	NEUTRAL	NA	3	"ASCC3,GRIK2,HACE1"
TCGA.DM.A28F	6	101728499	148435781	13868	-0.005	NEUTRAL	NA	197	Too-Many
TCGA.G4.6626	6	101781683	101907567	54	0.0301	NEUTRAL	NA	1	GRIK2
TCGA.DY.A1DF	6	101801580	113121684	3320	0.0124	NEUTRAL	NA	53	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FAM229B,FIG4,FOXO3,FYN,GPR6,GRIK2,GTF3C6,HACE1,KIAA1919,LACE1,LAMA4,LIN28B,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RFPL4B,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,TUBE1,WASF1,WISP3,ZBTB24"
TCGA.AA.3685	6	101837920	101916570	35	-0.1388	NEUTRAL	NA	1	GRIK2
TCGA.G4.6626	6	101916570	102056823	39	-0.2808	NEUTRAL	NA	1	GRIK2
TCGA.AA.3685	6	101920505	108207035	1948	0.264	NEUTRAL	NA	17	"AIM1,ATG5,BEND3,BVES,C6orf203,GRIK2,HACE1,LIN28B,PDSS2,POPDC3,PRDM1,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SOBP"
TCGA.AZ.6600	6	102043285	153453986	15739	-0.2856	NEUTRAL	NA	231	Too-Many
TCGA.G4.6626	6	102057437	112357512	3008	0.0608	NEUTRAL	NA	48	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,FOXO3,FYN,GPR6,GRIK2,GTF3C6,HACE1,KIAA1919,LACE1,LIN28B,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,WASF1,ZBTB24"
TCGA.AG.3893	6	102419312	162903180	18934	0.0141	NEUTRAL	NA	271	Too-Many
TCGA.AG.A01W.01A	6	102618458	111321326	405	0.0502	NEUTRAL	NA	42	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,FOXO3,GPR6,GTF3C6,HACE1,LACE1,LIN28B,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC22A16,SMPD2,SNX3,SOBP,WASF1,ZBTB24"
TCGA.D5.6932	6	102885629	112946469	2946	0.0764	NEUTRAL	NA	52	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FAM229B,FIG4,FOXO3,FYN,GPR6,GTF3C6,HACE1,KIAA1919,LACE1,LAMA4,LIN28B,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RFPL4B,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,TUBE1,WASF1,WISP3,ZBTB24"
TCGA.AY.A71X	6	102993376	150387745	14245	0.0243	NEUTRAL	NA	214	Too-Many
TCGA.AZ.4682	6	103864446	104286235	141	-0.2059	NEUTRAL	NA	0	None
TCGA.F4.6856	6	104170762	170918030	21904	-0.0054	NEUTRAL	NA	304	Too-Many
TCGA.AZ.4682	6	104293156	170918030	21901	0.315	NEUTRAL	NA	304	Too-Many
TCGA.AA.3811	6	104765743	132698455	8182	0.1205	NEUTRAL	NA	127	Too-Many
TCGA.AA.3867	6	104871538	115191060	3086	0.0236	NEUTRAL	NA	55	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FAM229B,FIG4,FOXO3,FYN,GPR6,GTF3C6,HACE1,HDAC2,HS3ST5,KIAA1919,LACE1,LAMA4,LIN28B,LOC100996634,MARCKS,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RFPL4B,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,TUBE1,WASF1,WISP3,ZBTB24"
TCGA.F4.6854	6	104881606	123543795	5276	0.0301	NEUTRAL	NA	93	"AIM1,AK9,AMD1,ARMC2,ASF1A,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,CEP85L,CLVS2,COL10A1,DCBLD1,DDO,DSE,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FIG4,FOXO3,FRK,FYN,GJA1,GOPC,GPR6,GPRC6A,GTF3C6,HACE1,HDAC2,HS3ST5,HSF2,KIAA1919,KPNA5,LACE1,LAMA4,LIN28B,LOC100996634,MAN1A1,MARCKS,MCM9,METTL24,MICAL1,NR2E1,NT5DC1,NUS1,OSTM1,PDSS2,PKIB,PLN,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RFPL4B,RFX6,ROS1,RPF2,RSPH4A,RTN4IP1,RWDD1,SCML4,SEC63,SERINC1,SESN1,SLC16A10,SLC22A16,SLC35F1,SMPD2,SMPDL3A,SNX3,SOBP,TBC1D32,TRAF3IP2,TRAPPC3L,TRDN,TSPYL1,TSPYL4,TUBE1,VGLL2,WASF1,WISP3,ZBTB24,ZUFSP"
TCGA.AA.3982	6	105054946	107863077	898	0.1056	NEUTRAL	NA	14	"AIM1,ATG5,BEND3,BVES,C6orf203,HACE1,LIN28B,PDSS2,POPDC3,PRDM1,PREP,QRSL1,RTN4IP1,SOBP"
TCGA.AA.3941	6	105136935	112621833	2252	-0.1855	NEUTRAL	NA	51	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FAM229B,FIG4,FOXO3,FYN,GPR6,GTF3C6,HACE1,KIAA1919,LACE1,LAMA4,LIN28B,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,TUBE1,WASF1,WISP3,ZBTB24"
TCGA.AA.3850	6	105165366	112615437	2242	0.17615	NEUTRAL	NA	51	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FAM229B,FIG4,FOXO3,FYN,GPR6,GTF3C6,HACE1,KIAA1919,LACE1,LAMA4,LIN28B,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,TUBE1,WASF1,WISP3,ZBTB24"
TCGA.AA.3844	6	105167037	112641113	2247	0.0065	NEUTRAL	NA	51	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FAM229B,FIG4,FOXO3,FYN,GPR6,GTF3C6,HACE1,KIAA1919,LACE1,LAMA4,LIN28B,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,TUBE1,WASF1,WISP3,ZBTB24"
TCGA.CK.5914.01A	6	105177489	105609342	40	-0.1699	NEUTRAL	NA	4	"BVES,HACE1,LIN28B,POPDC3"
TCGA.AA.A02H.01A	6	105198178	112025155	424	-0.4226	NEUTRAL	NA	47	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,FOXO3,FYN,GPR6,GTF3C6,HACE1,KIAA1919,LACE1,LIN28B,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,REV3L,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,WASF1,ZBTB24"
TCGA.AA.A01I.01A	6	105198178	136677780	1423	0.2523	NEUTRAL	NA	152	Too-Many
TCGA.A6.3808.01A	6	105219030	108067846	139	-0.2271	NEUTRAL	NA	15	"AIM1,ATG5,BEND3,BVES,C6orf203,HACE1,LIN28B,PDSS2,POPDC3,PRDM1,PREP,QRSL1,RTN4IP1,SCML4,SOBP"
TCGA.AA.3930.01A	6	105231908	110300304	343	0.2754	NEUTRAL	NA	33	"AIM1,AK9,ARMC2,ATG5,BEND3,BVES,C6orf203,CD164,CEP57L1,FIG4,FOXO3,GPR6,HACE1,LACE1,LIN28B,LOC100996634,MICAL1,NR2E1,OSTM1,PDSS2,POPDC3,PPIL6,PRDM1,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SESN1,SMPD2,SNX3,SOBP,ZBTB24"
TCGA.AA.3509.01A	6	105243426	108093339	134	-0.1389	NEUTRAL	NA	15	"AIM1,ATG5,BEND3,BVES,C6orf203,HACE1,LIN28B,PDSS2,POPDC3,PRDM1,PREP,QRSL1,RTN4IP1,SCML4,SOBP"
TCGA.AZ.4684.01A	6	105243426	109315614	214	0.0291	NEUTRAL	NA	23	"AIM1,ARMC2,ATG5,BEND3,BVES,C6orf203,FOXO3,HACE1,LACE1,LIN28B,NR2E1,OSTM1,PDSS2,POPDC3,PRDM1,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SESN1,SNX3,SOBP"
TCGA.AG.3906.01A	6	105300118	105563510	7	0.2123	NEUTRAL	NA	3	"BVES,HACE1,LIN28B"
TCGA.AA.A00N.01A	6	105405932	105564528	6	0.3559	NEUTRAL	NA	2	"BVES,LIN28B"
TCGA.AG.3891.01A	6	105548923	105607535	9	0.223	NEUTRAL	NA	2	"BVES,POPDC3"
TCGA.AG.3891.01A	6	105609342	107231966	70	-0.0815	NEUTRAL	NA	7	"AIM1,ATG5,POPDC3,PRDM1,PREP,QRSL1,RTN4IP1"
TCGA.AG.3906.01A	6	105725969	107039989	54	-0.0757	NEUTRAL	NA	5	"AIM1,ATG5,PRDM1,PREP,RTN4IP1"
TCGA.AA.A010.01A	6	105725969	107780154	91	0.3179	NEUTRAL	NA	9	"AIM1,ATG5,BEND3,C6orf203,PDSS2,PRDM1,PREP,QRSL1,RTN4IP1"
TCGA.AG.4009.01A	6	105725969	108232484	107	-0.0183	NEUTRAL	NA	12	"AIM1,ATG5,BEND3,C6orf203,PDSS2,PRDM1,PREP,QRSL1,RTN4IP1,SCML4,SEC63,SOBP"
TCGA.AA.A00A.01A	6	105823961	170892551	2645	-0.0682	NEUTRAL	NA	300	Too-Many
TCGA.CK.5914.01A	6	105825213	106554774	13	-0.4786	NEUTRAL	NA	2	"PRDM1,PREP"
TCGA.DM.A1HB	6	106469980	117280311	3060	0.0048	NEUTRAL	NA	67	"AIM1,AK9,AMD1,ARMC2,ATG5,BEND3,C6orf203,CD164,CDC40,CDK19,CEP57L1,COL10A1,DDO,DSE,FAM162B,FAM229B,FAM26D,FAM26E,FAM26F,FIG4,FOXO3,FRK,FYN,GPR6,GPRC6A,GTF3C6,HDAC2,HS3ST5,KIAA1919,KPNA5,LACE1,LAMA4,LOC100996634,MARCKS,METTL24,MICAL1,NR2E1,NT5DC1,OSTM1,PDSS2,PPIL6,PRDM1,QRSL1,REV3L,RFPL4B,RFX6,RPF2,RSPH4A,RTN4IP1,RWDD1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,TRAPPC3L,TSPYL1,TSPYL4,TUBE1,WASF1,WISP3,ZBTB24,ZUFSP"
TCGA.CK.5914.01A	6	106763925	106977999	7	-0.062	NEUTRAL	NA	2	"AIM1,ATG5"
TCGA.AA.A01C.01A	6	106967004	112025155	369	-0.0991	NEUTRAL	NA	40	"AIM1,AK9,AMD1,ARMC2,BEND3,C6orf203,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,FOXO3,FYN,GPR6,GTF3C6,KIAA1919,LACE1,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,PPIL6,QRSL1,REV3L,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,WASF1,ZBTB24"
TCGA.AA.A00N.01A	6	106987228	108230082	80	0.252	NEUTRAL	NA	9	"AIM1,BEND3,C6orf203,PDSS2,QRSL1,RTN4IP1,SCML4,SEC63,SOBP"
TCGA.AG.A023.01A	6	107039989	109996795	193	-0.3208	NEUTRAL	NA	23	"AK9,ARMC2,BEND3,C6orf203,CD164,CEP57L1,FOXO3,LACE1,LOC100996634,MICAL1,NR2E1,OSTM1,PDSS2,PPIL6,QRSL1,RTN4IP1,SCML4,SEC63,SESN1,SMPD2,SNX3,SOBP,ZBTB24"
TCGA.AG.3906.01A	6	107050687	107908235	34	0.2417	NEUTRAL	NA	6	"BEND3,C6orf203,PDSS2,QRSL1,RTN4IP1,SOBP"
TCGA.CK.5914.01A	6	107067042	108026375	41	0.0904	NEUTRAL	NA	7	"BEND3,C6orf203,PDSS2,QRSL1,RTN4IP1,SCML4,SOBP"
TCGA.AG.3611.01A	6	107090821	107533276	19	0.103	NEUTRAL	NA	4	"BEND3,C6orf203,PDSS2,QRSL1"
TCGA.CM.6165.01A	6	107110834	107595226	19	-0.2339	NEUTRAL	NA	4	"BEND3,C6orf203,PDSS2,QRSL1"
TCGA.AG.3883	6	107473066	170918030	20875	0.2137	NEUTRAL	NA	292	Too-Many
TCGA.AG.3591	6	107511473	108018363	157	0.1745	NEUTRAL	NA	2	"PDSS2,SOBP"
TCGA.AA.A01K.01A	6	107514942	109764428	121	0.0034	NEUTRAL	NA	16	"ARMC2,CD164,CEP57L1,FOXO3,LACE1,LOC100996634,NR2E1,OSTM1,PDSS2,PPIL6,SCML4,SEC63,SESN1,SMPD2,SNX3,SOBP"
TCGA.AG.3891.01A	6	107566688	111214632	252	-0.0741	NEUTRAL	NA	28	"AK9,AMD1,ARMC2,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,FOXO3,GPR6,LACE1,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PDSS2,PPIL6,SCML4,SEC63,SESN1,SLC22A16,SMPD2,SNX3,SOBP,WASF1,ZBTB24"
TCGA.AG.3611.01A	6	107566688	125583943	647	-0.1847	NEUTRAL	NA	84	"AK9,AMD1,ARMC2,ASF1A,CD164,CDC40,CDK19,CEP57L1,CEP85L,CLVS2,COL10A1,DCBLD1,DDO,DSE,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FIG4,FOXO3,FRK,FYN,GJA1,GOPC,GPR6,GPRC6A,GTF3C6,HDAC2,HS3ST5,HSF2,KIAA1919,KPNA5,LACE1,LAMA4,LOC100996634,MAN1A1,MARCKS,MCM9,METTL24,MICAL1,NKAIN2,NR2E1,NT5DC1,NUS1,OSTM1,PDSS2,PKIB,PLN,PPIL6,REV3L,RFPL4B,RFX6,RNF217,ROS1,RPF2,RSPH4A,RWDD1,SCML4,SEC63,SERINC1,SESN1,SLC16A10,SLC22A16,SLC35F1,SMPD2,SMPDL3A,SNX3,SOBP,TBC1D32,TPD52L1,TRAF3IP2,TRAPPC3L,TRDN,TSPYL1,TSPYL4,TUBE1,VGLL2,WASF1,WISP3,ZBTB24,ZUFSP"
TCGA.AG.3728	6	107624659	162578606	17412	0.3288	NEUTRAL	NA	258	Too-Many
TCGA.CM.6165.01A	6	107655360	133091355	1254	0.0749	NEUTRAL	NA	126	Too-Many
TCGA.AA.3982	6	107865308	107921253	16	-0.3659	NEUTRAL	NA	1	SOBP
TCGA.AA.3982	6	107923283	112122225	1181	0.1522	NEUTRAL	NA	34	"AK9,AMD1,ARMC2,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,FOXO3,FYN,GPR6,GTF3C6,KIAA1919,LACE1,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PPIL6,REV3L,RPF2,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,WASF1,ZBTB24"
TCGA.AG.3591	6	108019318	111366464	936	-0.2136	NEUTRAL	NA	28	"AK9,AMD1,ARMC2,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,FOXO3,GPR6,GTF3C6,LACE1,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PPIL6,RPF2,SCML4,SEC63,SESN1,SLC22A16,SMPD2,SNX3,WASF1,ZBTB24"
TCGA.AA.A010.01A	6	108026375	109675999	108	0.116	NEUTRAL	NA	11	"ARMC2,CEP57L1,FOXO3,LACE1,LOC100996634,NR2E1,OSTM1,SCML4,SEC63,SESN1,SNX3"
TCGA.AA.A01F.01A	6	108029020	108070846	5	-0.4834	NEUTRAL	NA	1	SCML4
TCGA.AG.A016.01A	6	108029020	108070846	5	-0.5037	NEUTRAL	NA	1	SCML4
TCGA.AG.3906.01A	6	108041866	111214632	239	0.0227	NEUTRAL	NA	26	"AK9,AMD1,ARMC2,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,FOXO3,GPR6,LACE1,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PPIL6,SCML4,SEC63,SESN1,SLC22A16,SMPD2,SNX3,WASF1,ZBTB24"
TCGA.AG.A00C.01A	6	108076723	109774804	122	0.0736	NEUTRAL	NA	15	"ARMC2,CD164,CEP57L1,FOXO3,LACE1,LOC100996634,MICAL1,NR2E1,OSTM1,PPIL6,SCML4,SEC63,SESN1,SMPD2,SNX3"
TCGA.AG.A016.01A	6	108076723	112452119	339	0.3129	NEUTRAL	NA	37	"AK9,AMD1,ARMC2,CD164,CDC40,CDK19,CEP57L1,DDO,FAM229B,FIG4,FOXO3,FYN,GPR6,GTF3C6,KIAA1919,LACE1,LAMA4,LOC100996634,METTL24,MICAL1,NR2E1,OSTM1,PPIL6,REV3L,RPF2,SCML4,SEC63,SESN1,SLC16A10,SLC22A16,SMPD2,SNX3,TRAF3IP2,TUBE1,WASF1,WISP3,ZBTB24"
TCGA.AA.A01F.01A	6	108076723	169617824	2488	0.1044	NEUTRAL	NA	280	Too-Many
TCGA.AA.3685	6	108219530	162726826	17225	-0.1679	NEUTRAL	NA	255	Too-Many
TCGA.A6.3808.01A	6	108224011	109835379	143	-0.3422	NEUTRAL	NA	16	"AK9,ARMC2,CD164,CEP57L1,FOXO3,LACE1,LOC100996634,MICAL1,NR2E1,OSTM1,PPIL6,SEC63,SESN1,SMPD2,SNX3,ZBTB24"
TCGA.AA.3509.01A	6	108225813	109315614	71	-0.3081	NEUTRAL	NA	8	"ARMC2,FOXO3,LACE1,NR2E1,OSTM1,SEC63,SESN1,SNX3"
TCGA.CK.5914.01A	6	108242964	108508458	20	-0.4177	NEUTRAL	NA	3	"NR2E1,OSTM1,SEC63"
TCGA.AA.3949	6	108294668	170918030	20549	-0.0103	NEUTRAL	NA	288	Too-Many
TCGA.AG.4009.01A	6	108502700	109315614	43	-0.0987	NEUTRAL	NA	6	"ARMC2,FOXO3,LACE1,NR2E1,SESN1,SNX3"
TCGA.CK.5914.01A	6	108533302	108984651	21	0.3616	NEUTRAL	NA	3	"FOXO3,LACE1,SNX3"
TCGA.AA.A00N.01A	6	108533302	109313939	43	0.2535	NEUTRAL	NA	5	"ARMC2,FOXO3,LACE1,SESN1,SNX3"
TCGA.CK.5914.01A	6	109175430	109466383	29	-0.0026	NEUTRAL	NA	3	"ARMC2,CEP57L1,SESN1"
TCGA.AG.4009.01A	6	109414971	109697200	14	-0.1417	NEUTRAL	NA	4	"CD164,CEP57L1,LOC100996634,SESN1"
TCGA.AG.A01N.01A	6	109474985	111643723	183	-0.0435	NEUTRAL	NA	22	"AK9,AMD1,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,GPR6,GTF3C6,KIAA1919,LOC100996634,METTL24,MICAL1,PPIL6,REV3L,RPF2,SLC16A10,SLC22A16,SMPD2,WASF1,ZBTB24"
TCGA.AA.3509.01A	6	109480190	110953186	160	0.1576	NEUTRAL	NA	16	"AK9,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,GPR6,LOC100996634,METTL24,MICAL1,PPIL6,SLC22A16,SMPD2,WASF1,ZBTB24"
TCGA.AZ.4684.01A	6	109480190	111196270	166	0.3078	NEUTRAL	NA	17	"AK9,AMD1,CD164,CDC40,CDK19,CEP57L1,DDO,FIG4,GPR6,LOC100996634,METTL24,MICAL1,PPIL6,SLC22A16,SMPD2,WASF1,ZBTB24"
TCGA.AA.3861.01A	6	109669583	121563340	595	-0.2511	NEUTRAL	NA	60	"AK9,AMD1,ASF1A,CD164,CDC40,CDK19,CEP85L,COL10A1,DCBLD1,DDO,DSE,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FIG4,FRK,FYN,GOPC,GPR6,GPRC6A,GTF3C6,HDAC2,HS3ST5,KIAA1919,KPNA5,LAMA4,MAN1A1,MARCKS,MCM9,METTL24,MICAL1,NT5DC1,NUS1,PLN,PPIL6,REV3L,RFPL4B,RFX6,ROS1,RPF2,RSPH4A,RWDD1,SLC16A10,SLC22A16,SLC35F1,SMPD2,TBC1D32,TRAF3IP2,TRAPPC3L,TSPYL1,TSPYL4,TUBE1,VGLL2,WASF1,WISP3,ZBTB24,ZUFSP"
TCGA.AA.3862.01A	6	109669583	123384766	655	-0.3655	NEUTRAL	NA	67	"AK9,AMD1,ASF1A,CD164,CDC40,CDK19,CEP85L,CLVS2,COL10A1,DCBLD1,DDO,DSE,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FIG4,FRK,FYN,GJA1,GOPC,GPR6,GPRC6A,GTF3C6,HDAC2,HS3ST5,HSF2,KIAA1919,KPNA5,LAMA4,MAN1A1,MARCKS,MCM9,METTL24,MICAL1,NT5DC1,NUS1,PKIB,PLN,PPIL6,REV3L,RFPL4B,RFX6,ROS1,RPF2,RSPH4A,RWDD1,SERINC1,SLC16A10,SLC22A16,SLC35F1,SMPD2,SMPDL3A,TBC1D32,TRAF3IP2,TRAPPC3L,TSPYL1,TSPYL4,TUBE1,VGLL2,WASF1,WISP3,ZBTB24,ZUFSP"
TCGA.CK.5914.01A	6	109691543	109830332	49	-0.2798	NEUTRAL	NA	6	"AK9,CD164,MICAL1,PPIL6,SMPD2,ZBTB24"
TCGA.AG.A02X.01A	6	109697200	111588057	166	-0.1538	NEUTRAL	NA	19	"AK9,AMD1,CD164,CDC40,CDK19,DDO,FIG4,GPR6,GTF3C6,KIAA1919,METTL24,MICAL1,PPIL6,RPF2,SLC16A10,SLC22A16,SMPD2,WASF1,ZBTB24"
TCGA.AA.A02W.01A	6	109766367	170892551	2766	0.0265	NEUTRAL	NA	276	Too-Many
TCGA.AA.A01K.01A	6	109767289	151130728	1737	0.1961	NEUTRAL	NA	189	Too-Many
TCGA.AA.A00F.01A	6	109787004	109816492	9	0.2966	NEUTRAL	NA	3	"AK9,MICAL1,ZBTB24"
TCGA.AA.A02K.01A	6	109802189	144612904	1534	-6.00E-04	NEUTRAL	NA	159	Too-Many
TCGA.AA.A00F.01A	6	109818616	109837596	5	-0.0085	NEUTRAL	NA	1	AK9
TCGA.AF.3914.01A	6	109818616	132211443	963	-0.1454	NEUTRAL	NA	95	"AK9,AKAP7,AMD1,ARG1,ARHGAP18,ASF1A,C6orf58,CDC40,CDK19,CENPW,CEP85L,CLVS2,COL10A1,CTAGE9,DCBLD1,DDO,DSE,ECHDC1,ENPP1,ENPP3,EPB41L2,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FIG4,FRK,FYN,GJA1,GOPC,GPR6,GPRC6A,GTF3C6,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KIAA1919,KPNA5,L3MBTL3,LAMA2,LAMA4,MAN1A1,MARCKS,MCM9,MED23,METTL24,NCOA7,NKAIN2,NT5DC1,NUS1,OR2A4,PKIB,PLN,PTPRK,REV3L,RFPL4B,RFX6,RNF146,RNF217,ROS1,RPF2,RSPH4A,RSPO3,RWDD1,SAMD3,SERINC1,SLC16A10,SLC22A16,SLC35F1,SMLR1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TMEM200A,TMEM244,TPD52L1,TRAF3IP2,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,TUBE1,VGLL2,WASF1,WISP3,ZUFSP"
TCGA.AG.3909.01A	6	109827482	110643927	70	0.288	NEUTRAL	NA	6	"AK9,CDC40,FIG4,GPR6,METTL24,WASF1"
TCGA.AG.4009.01A	6	109827482	111318325	107	0.0218	NEUTRAL	NA	12	"AK9,AMD1,CDC40,CDK19,DDO,FIG4,GPR6,GTF3C6,METTL24,RPF2,SLC22A16,WASF1"
TCGA.AA.A00F.01A	6	109850196	114383851	233	-0.318	NEUTRAL	NA	25	"AK9,AMD1,CDC40,CDK19,DDO,FAM229B,FIG4,FYN,GPR6,GTF3C6,HDAC2,HS3ST5,KIAA1919,LAMA4,MARCKS,METTL24,REV3L,RFPL4B,RPF2,SLC16A10,SLC22A16,TRAF3IP2,TUBE1,WASF1,WISP3"
TCGA.AG.A00C.01A	6	109863203	110643927	65	-0.2296	NEUTRAL	NA	6	"AK9,CDC40,FIG4,GPR6,METTL24,WASF1"
TCGA.AA.A010.01A	6	109863203	119149042	481	0.1401	NEUTRAL	NA	51	"AK9,AMD1,CDC40,CDK19,CEP85L,COL10A1,DCBLD1,DDO,DSE,FAM162B,FAM229B,FAM26D,FAM26E,FAM26F,FIG4,FRK,FYN,GOPC,GPR6,GPRC6A,GTF3C6,HDAC2,HS3ST5,KIAA1919,KPNA5,LAMA4,MARCKS,MCM9,METTL24,NT5DC1,NUS1,PLN,REV3L,RFPL4B,RFX6,ROS1,RPF2,RSPH4A,RWDD1,SLC16A10,SLC22A16,SLC35F1,TRAF3IP2,TRAPPC3L,TSPYL1,TSPYL4,TUBE1,VGLL2,WASF1,WISP3,ZUFSP"
TCGA.AG.A023.01A	6	110036229	158322898	2081	0.0505	NEUTRAL	NA	211	Too-Many
TCGA.DC.6158	6	110416867	170918030	19939	0.0204	NEUTRAL	NA	271	Too-Many
TCGA.AA.3930.01A	6	110421673	110551115	23	-0.0303	NEUTRAL	NA	2	"CDC40,WASF1"
TCGA.DM.A1D7	6	110537684	129054039	5125	-0.4784	NEUTRAL	NA	76	"AMD1,ASF1A,C6orf58,CDC40,CDK19,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DDO,DSE,ECHDC1,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,FYN,GJA1,GOPC,GPRC6A,GTF3C6,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KIAA1919,KPNA5,LAMA4,MAN1A1,MARCKS,MCM9,METTL24,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,REV3L,RFPL4B,RFX6,RNF146,RNF217,ROS1,RPF2,RSPH4A,RSPO3,RWDD1,SERINC1,SLC16A10,SLC22A16,SLC35F1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TPD52L1,TRAF3IP2,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,TUBE1,VGLL2,WISP3,ZUFSP"
TCGA.AG.3594	6	110599163	114196570	1082	0.056	NEUTRAL	NA	18	"AMD1,CDK19,DDO,FAM229B,FYN,GTF3C6,KIAA1919,LAMA4,MARCKS,METTL24,REV3L,RFPL4B,RPF2,SLC16A10,SLC22A16,TRAF3IP2,TUBE1,WISP3"
TCGA.AG.A00C.01A	6	110714017	111588057	57	0.2069	NEUTRAL	NA	8	"AMD1,CDK19,DDO,GTF3C6,KIAA1919,RPF2,SLC16A10,SLC22A16"
TCGA.AA.3930.01A	6	110725928	154489006	2077	0.1747	NEUTRAL	NA	196	Too-Many
TCGA.CK.5914.01A	6	110943249	111632244	49	-0.0367	NEUTRAL	NA	7	"AMD1,CDK19,GTF3C6,KIAA1919,REV3L,RPF2,SLC16A10"
TCGA.AA.A00D.01A	6	110947932	111346627	30	0.3407	NEUTRAL	NA	4	"AMD1,CDK19,GTF3C6,RPF2"
TCGA.AG.3909.01A	6	110988598	111346627	25	-0.1141	NEUTRAL	NA	4	"AMD1,CDK19,GTF3C6,RPF2"
TCGA.AZ.4684.01A	6	111208655	111585004	31	-0.4391	NEUTRAL	NA	5	"AMD1,GTF3C6,KIAA1919,RPF2,SLC16A10"
TCGA.A6.3810.01A	6	111210018	111346627	20	-0.1446	NEUTRAL	NA	3	"AMD1,GTF3C6,RPF2"
TCGA.AG.4009.01A	6	111408939	117198412	218	-0.0306	NEUTRAL	NA	30	"COL10A1,DSE,FAM162B,FAM229B,FAM26D,FAM26E,FAM26F,FRK,FYN,GPRC6A,HDAC2,HS3ST5,KIAA1919,KPNA5,LAMA4,MARCKS,NT5DC1,REV3L,RFPL4B,RFX6,RSPH4A,RWDD1,SLC16A10,TRAF3IP2,TRAPPC3L,TSPYL1,TSPYL4,TUBE1,WISP3,ZUFSP"
TCGA.AG.3891.01A	6	111408939	123318342	441	-0.2471	NEUTRAL	NA	50	"ASF1A,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,FYN,GJA1,GOPC,GPRC6A,HDAC2,HS3ST5,HSF2,KIAA1919,KPNA5,LAMA4,MAN1A1,MARCKS,MCM9,NT5DC1,NUS1,PKIB,PLN,REV3L,RFPL4B,RFX6,ROS1,RSPH4A,RWDD1,SERINC1,SLC16A10,SLC35F1,SMPDL3A,TBC1D32,TRAF3IP2,TRAPPC3L,TSPYL1,TSPYL4,TUBE1,VGLL2,WISP3,ZUFSP"
TCGA.AA.A00D.01A	6	111408939	130154555	566	-0.1918	NEUTRAL	NA	71	"ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,ECHDC1,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,FYN,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KIAA1919,KPNA5,LAMA2,LAMA4,MAN1A1,MARCKS,MCM9,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,REV3L,RFPL4B,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SERINC1,SLC16A10,SLC35F1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TMEM244,TPD52L1,TRAF3IP2,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,TUBE1,VGLL2,WISP3,ZUFSP"
TCGA.A6.3810.01A	6	111408939	162206753	2566	0.162	NEUTRAL	NA	228	Too-Many
TCGA.AG.A01W.01A	6	111409917	111453283	10	-0.2856	NEUTRAL	NA	1	SLC16A10
TCGA.AG.3906.01A	6	111493849	135375707	974	-0.0619	NEUTRAL	NA	104	Too-Many
TCGA.AA.3509.01A	6	111587058	111678169	17	-0.0571	NEUTRAL	NA	2	"KIAA1919,REV3L"
TCGA.AZ.4684.01A	6	111587058	112385941	59	0.2344	NEUTRAL	NA	5	"FYN,KIAA1919,REV3L,TRAF3IP2,WISP3"
TCGA.AA.A004.01A	6	111587058	170892551	2588	0.0028	NEUTRAL	NA	261	Too-Many
TCGA.AG.3909.01A	6	111621190	111714026	28	0.3577	NEUTRAL	NA	1	REV3L
TCGA.AG.A00C.01A	6	111621190	119324032	338	-0.1255	NEUTRAL	NA	39	"ASF1A,CEP85L,COL10A1,DCBLD1,DSE,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,FYN,GOPC,GPRC6A,HDAC2,HS3ST5,KPNA5,LAMA4,MARCKS,MCM9,NT5DC1,NUS1,PLN,REV3L,RFPL4B,RFX6,ROS1,RSPH4A,RWDD1,SLC35F1,TRAF3IP2,TRAPPC3L,TSPYL1,TSPYL4,TUBE1,VGLL2,WISP3,ZUFSP"
TCGA.AG.A02X.01A	6	111621190	170892551	2645	0.2215	NEUTRAL	NA	260	Too-Many
TCGA.AG.A01W.01A	6	111634448	111750439	14	-0.0588	NEUTRAL	NA	1	REV3L
TCGA.AG.A01N.01A	6	111650683	144416326	1311	0.2711	NEUTRAL	NA	142	Too-Many
TCGA.BM.6198	6	111662101	114842290	967	-0.45905	NEUTRAL	NA	11	"FAM229B,FYN,HDAC2,HS3ST5,LAMA4,MARCKS,REV3L,RFPL4B,TRAF3IP2,TUBE1,WISP3"
TCGA.AG.3909.01A	6	111726621	111737459	3	-0.2711	NEUTRAL	NA	1	REV3L
TCGA.AG.A01W.01A	6	111757377	111817953	21	0.2374	NEUTRAL	NA	1	REV3L
TCGA.AG.A01W.01A	6	111820720	112487863	27	-0.1553	NEUTRAL	NA	6	"FAM229B,FYN,LAMA4,TRAF3IP2,TUBE1,WISP3"
TCGA.AA.A01C.01A	6	112029096	138607036	1085	0.193	NEUTRAL	NA	117	Too-Many
TCGA.AA.A02H.01A	6	112029096	147705770	1405	-0.1175	NEUTRAL	NA	149	Too-Many
TCGA.AA.3982	6	112126338	132987055	6100	-0.2537	NEUTRAL	NA	88	"AKAP7,ARG1,ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,CTAGE9,CTGF,DCBLD1,DSE,ECHDC1,ENPP1,ENPP3,EPB41L2,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,FYN,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,L3MBTL3,LAMA2,LAMA4,MAN1A1,MARCKS,MCM9,MED23,MOXD1,NCOA7,NKAIN2,NT5DC1,NUS1,OR2A4,PKIB,PLN,PTPRK,RFPL4B,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SAMD3,SERINC1,SLC35F1,SMLR1,SMPDL3A,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBC1D32,THEMIS,TMEM200A,TMEM244,TPD52L1,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,TUBE1,VGLL2,WISP3,ZUFSP"
TCGA.G4.6626	6	112369881	135352087	6854	0.0594	NEUTRAL	NA	99	"AKAP7,ALDH8A1,ARG1,ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,CTAGE9,CTGF,DCBLD1,DSE,ECHDC1,ENPP1,ENPP3,EPB41L2,EYA4,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HBS1L,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,L3MBTL3,LAMA2,LAMA4,MAN1A1,MARCKS,MCM9,MED23,MOXD1,NCOA7,NKAIN2,NT5DC1,NUS1,OR2A4,PKIB,PLN,PTPRK,RFPL4B,RFX6,RNF146,RNF217,ROS1,RPS12,RSPH4A,RSPO3,RWDD1,SAMD3,SERINC1,SGK1,SLC18B1,SLC2A12,SLC35F1,SMLR1,SMPDL3A,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBC1D32,TBPL1,TCF21,THEMIS,TMEM200A,TMEM244,TPD52L1,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,TUBE1,VGLL2,VNN1,VNN2,VNN3,WISP3,ZUFSP"
TCGA.AG.3909.01A	6	112382173	112421842	17	0.1622	NEUTRAL	NA	3	"FAM229B,TUBE1,WISP3"
TCGA.CK.5914.01A	6	112400750	112421842	8	-0.1801	NEUTRAL	NA	2	"FAM229B,TUBE1"
TCGA.AG.A016.01A	6	112469327	112670879	21	0.2128	NEUTRAL	NA	2	"LAMA4,RFPL4B"
TCGA.AG.A015.01A	6	112469327	158902099	1945	0.2705	NEUTRAL	NA	196	Too-Many
TCGA.AG.A01W.01A	6	112488886	129946785	632	0.2511	NEUTRAL	NA	62	"ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,ECHDC1,FABP7,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,LAMA2,LAMA4,MAN1A1,MARCKS,MCM9,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,RFPL4B,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SERINC1,SLC35F1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TPD52L1,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.CK.5914.01A	6	112575000	114281032	18	-0.3412	NEUTRAL	NA	4	"HDAC2,LAMA4,MARCKS,RFPL4B"
TCGA.AA.3850	6	112621833	129925002	4805	-0.47625	NEUTRAL	NA	61	"ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,ECHDC1,FABP7,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,LAMA2,MAN1A1,MARCKS,MCM9,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,RFPL4B,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SERINC1,SLC35F1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TPD52L1,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.AG.3591	6	112634948	114941922	671	-0.2052	NEUTRAL	NA	4	"HDAC2,HS3ST5,MARCKS,RFPL4B"
TCGA.AA.3844	6	112642325	122570109	2675	-0.3568	NEUTRAL	NA	35	"ASF1A,CEP85L,COL10A1,DCBLD1,DSE,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HS3ST5,KPNA5,MAN1A1,MARCKS,MCM9,NT5DC1,NUS1,PLN,RFPL4B,RFX6,ROS1,RSPH4A,RWDD1,SLC35F1,TBC1D32,TRAPPC3L,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.AA.A00N.01A	6	112670879	117853376	179	-0.0427	NEUTRAL	NA	24	"COL10A1,DCBLD1,DSE,FAM162B,FAM26D,FAM26E,FAM26F,FRK,GPRC6A,HDAC2,HS3ST5,KPNA5,MARCKS,NT5DC1,RFPL4B,RFX6,ROS1,RSPH4A,RWDD1,TRAPPC3L,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.D5.6931	6	112759226	170918030	19303	0.0117	NEUTRAL	NA	252	Too-Many
TCGA.D5.6932	6	112958213	125228005	3458	0.0432	NEUTRAL	NA	42	"ASF1A,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,FABP7,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HS3ST5,HSF2,KPNA5,MAN1A1,MARCKS,MCM9,NKAIN2,NT5DC1,NUS1,PKIB,PLN,RFX6,ROS1,RSPH4A,RWDD1,SERINC1,SLC35F1,SMPDL3A,TBC1D32,TRAPPC3L,TRDN,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.CM.5868	6	112973010	170918030	19259	-0.0334	NEUTRAL	NA	252	Too-Many
TCGA.DY.A1DF	6	113124300	170918030	19255	0.3439	NEUTRAL	NA	252	Too-Many
TCGA.AA.3979	6	114078015	162513435	15422	-0.0069	NEUTRAL	NA	218	Too-Many
TCGA.CM.4747	6	114216867	133714746	5706	-0.3725	NEUTRAL	NA	87	"AKAP7,ARG1,ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,CTAGE9,CTGF,DCBLD1,DSE,ECHDC1,ENPP1,ENPP3,EPB41L2,EYA4,FABP7,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,L3MBTL3,LAMA2,MAN1A1,MCM9,MED23,MOXD1,NCOA7,NKAIN2,NT5DC1,NUS1,OR2A4,PKIB,PLN,PTPRK,RFX6,RNF146,RNF217,ROS1,RPS12,RSPH4A,RSPO3,RWDD1,SAMD3,SERINC1,SLC18B1,SLC35F1,SMLR1,SMPDL3A,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBC1D32,THEMIS,TMEM200A,TMEM244,TPD52L1,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,VGLL2,VNN1,VNN2,VNN3,ZUFSP"
TCGA.AG.3909.01A	6	114291983	117678915	125	0.0429	NEUTRAL	NA	21	"COL10A1,DSE,FAM162B,FAM26D,FAM26E,FAM26F,FRK,GPRC6A,HDAC2,HS3ST5,KPNA5,NT5DC1,RFX6,ROS1,RSPH4A,RWDD1,TRAPPC3L,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.CK.5914.01A	6	114291983	123110441	315	0.3698	NEUTRAL	NA	38	"ASF1A,CEP85L,COL10A1,DCBLD1,DSE,FABP7,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HS3ST5,HSF2,KPNA5,MAN1A1,MCM9,NT5DC1,NUS1,PKIB,PLN,RFX6,ROS1,RSPH4A,RWDD1,SERINC1,SLC35F1,SMPDL3A,TBC1D32,TRAPPC3L,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.BM.6198	6	114847006	170918030	18726	0.06765	NEUTRAL	NA	249	Too-Many
TCGA.AG.3591	6	115054420	116144519	262	0.241	NEUTRAL	NA	0	None
TCGA.AA.3867	6	115206846	122570109	1943	-0.1612	NEUTRAL	NA	31	"ASF1A,CEP85L,COL10A1,DCBLD1,DSE,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,KPNA5,MAN1A1,MCM9,NT5DC1,NUS1,PLN,RFX6,ROS1,RSPH4A,RWDD1,SLC35F1,TBC1D32,TRAPPC3L,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.AA.3526	6	115206846	170918030	18633	-0.0198	NEUTRAL	NA	249	Too-Many
TCGA.CL.4957	6	115214470	170918030	18643	-0.0045	NEUTRAL	NA	249	Too-Many
TCGA.G4.6314	6	115340201	117605990	572	-0.3048	NEUTRAL	NA	18	"COL10A1,DSE,FAM162B,FAM26D,FAM26E,FAM26F,FRK,GPRC6A,KPNA5,NT5DC1,RFX6,RSPH4A,RWDD1,TRAPPC3L,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.CM.5860	6	115368796	162940237	15318	0.2699	NEUTRAL	NA	215	Too-Many
TCGA.AA.A00F.01A	6	116263538	119234421	181	0.1685	NEUTRAL	NA	27	"ASF1A,CEP85L,COL10A1,DCBLD1,DSE,FAM162B,FAM26D,FAM26E,FAM26F,FRK,GOPC,GPRC6A,KPNA5,MCM9,NT5DC1,NUS1,PLN,RFX6,ROS1,RSPH4A,RWDD1,SLC35F1,TRAPPC3L,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.AG.3591	6	116314633	144434023	8441	-0.1863	NEUTRAL	NA	131	Too-Many
TCGA.DM.A1HA	6	116520347	161917336	14571	-0.0051	NEUTRAL	NA	213	Too-Many
TCGA.AG.A016.01A	6	116720405	170892551	2483	0.2739	NEUTRAL	NA	244	Too-Many
TCGA.AG.4009.01A	6	117232071	117252467	12	-0.0862	NEUTRAL	NA	1	RFX6
TCGA.DM.A1HB	6	117287189	118113185	224	-0.0394	NEUTRAL	NA	5	"DCBLD1,GOPC,NUS1,ROS1,VGLL2"
TCGA.G4.6314	6	117608317	170918030	18035	-0.0035	NEUTRAL	NA	231	Too-Many
TCGA.AG.4009.01A	6	117622090	117746656	43	-0.0373	NEUTRAL	NA	1	ROS1
TCGA.AG.3909.01A	6	117680923	117683717	3	-0.3642	NEUTRAL	NA	1	ROS1
TCGA.AG.3909.01A	6	117717293	117853376	14	0.0138	NEUTRAL	NA	2	"DCBLD1,ROS1"
TCGA.G4.6322	6	117860057	150981964	10229	-0.006	NEUTRAL	NA	143	Too-Many
TCGA.AG.4009.01A	6	117891969	118953564	30	-0.0752	NEUTRAL	NA	5	"CEP85L,GOPC,NUS1,PLN,SLC35F1"
TCGA.AA.A00N.01A	6	117894583	118015171	8	-0.1787	NEUTRAL	NA	2	"GOPC,NUS1"
TCGA.AG.3909.01A	6	117996782	118028032	5	0.0749	NEUTRAL	NA	1	NUS1
TCGA.DM.A1HB	6	118127967	118347873	52	0.0245	NEUTRAL	NA	1	SLC35F1
TCGA.A6.6648	6	118326237	119132163	255	-0.3118	NEUTRAL	NA	3	"CEP85L,PLN,SLC35F1"
TCGA.DM.A1HB	6	118368882	120870447	700	-0.0282	NEUTRAL	NA	7	"ASF1A,CEP85L,FAM184A,MAN1A1,MCM9,PLN,SLC35F1"
TCGA.CM.6169	6	118988151	170918030	17558	0.1568	NEUTRAL	NA	225	Too-Many
TCGA.A6.6648	6	119137657	134445762	4653	0.0171	NEUTRAL	NA	63	"AKAP7,ARG1,ARHGAP18,ASF1A,C6orf58,CENPW,CLVS2,CTAGE9,CTGF,ECHDC1,ENPP1,ENPP3,EPB41L2,EYA4,FABP7,FAM184A,GJA1,HDDC2,HEY2,HINT3,HSF2,KIAA0408,L3MBTL3,LAMA2,MAN1A1,MCM9,MED23,MOXD1,NCOA7,NKAIN2,OR2A4,PKIB,PTPRK,RNF146,RNF217,RPS12,RSPO3,SAMD3,SERINC1,SLC18B1,SLC2A12,SMLR1,SMPDL3A,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBC1D32,TBPL1,TCF21,THEMIS,TMEM200A,TMEM244,TPD52L1,TRDN,TRMT11,VNN1,VNN2,VNN3"
TCGA.AG.3909.01A	6	119281209	119301254	10	0.2227	NEUTRAL	NA	1	FAM184A
TCGA.AG.4009.01A	6	119281209	125621634	153	-0.118	NEUTRAL	NA	15	"CLVS2,FABP7,FAM184A,GJA1,HDDC2,HSF2,MAN1A1,NKAIN2,PKIB,RNF217,SERINC1,SMPDL3A,TBC1D32,TPD52L1,TRDN"
TCGA.AA.A010.01A	6	119295556	135375707	666	-0.0088	NEUTRAL	NA	64	"AKAP7,ALDH8A1,ARG1,ARHGAP18,C6orf58,CENPW,CLVS2,CTAGE9,CTGF,ECHDC1,ENPP1,ENPP3,EPB41L2,EYA4,FABP7,FAM184A,GJA1,HBS1L,HDDC2,HEY2,HINT3,HSF2,KIAA0408,L3MBTL3,LAMA2,MAN1A1,MED23,MOXD1,NCOA7,NKAIN2,OR2A4,PKIB,PTPRK,RNF146,RNF217,RPS12,RSPO3,SAMD3,SERINC1,SGK1,SLC18B1,SLC2A12,SMLR1,SMPDL3A,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBC1D32,TBPL1,TCF21,THEMIS,TMEM200A,TMEM244,TPD52L1,TRDN,TRMT11,VNN1,VNN2,VNN3"
TCGA.CA.5254	6	119320312	163015357	14295	-0.4519	NEUTRAL	NA	188	Too-Many
TCGA.AA.A00F.01A	6	119500942	123038886	35	0.0117	NEUTRAL	NA	6	"GJA1,HSF2,MAN1A1,PKIB,SERINC1,TBC1D32"
TCGA.AG.A00C.01A	6	119500942	123046255	68	-0.1889	NEUTRAL	NA	6	"GJA1,HSF2,MAN1A1,PKIB,SERINC1,TBC1D32"
TCGA.AG.3909.01A	6	119669637	122773055	49	0.0634	NEUTRAL	NA	5	"GJA1,HSF2,MAN1A1,SERINC1,TBC1D32"
TCGA.DM.A1HB	6	120877956	124633498	1049	-0.0723	NEUTRAL	NA	10	"CLVS2,FABP7,GJA1,HSF2,NKAIN2,PKIB,SERINC1,SMPDL3A,TBC1D32,TRDN"
TCGA.A6.2686	6	121727689	123304218	406	0.0087	NEUTRAL	NA	6	"FABP7,GJA1,HSF2,PKIB,SERINC1,SMPDL3A"
TCGA.A6.6782	6	121783129	162601115	13434	-0.045	NEUTRAL	NA	184	Too-Many
TCGA.AZ.6608	6	121785690	131308426	2856	-0.024	NEUTRAL	NA	32	"ARHGAP18,C6orf58,CENPW,CLVS2,ECHDC1,EPB41L2,FABP7,HDDC2,HEY2,HINT3,HSF2,KIAA0408,L3MBTL3,LAMA2,NCOA7,NKAIN2,PKIB,PTPRK,RNF146,RNF217,RSPO3,SAMD3,SERINC1,SMLR1,SMPDL3A,SOGA3,THEMIS,TMEM200A,TMEM244,TPD52L1,TRDN,TRMT11"
TCGA.AA.3867	6	122594826	170918030	16683	-0.0335	NEUTRAL	NA	218	Too-Many
TCGA.AA.3844	6	122617094	129973961	2122	-0.4046	NEUTRAL	NA	26	"ARHGAP18,C6orf58,CENPW,CLVS2,ECHDC1,FABP7,HDDC2,HEY2,HINT3,HSF2,KIAA0408,LAMA2,NCOA7,NKAIN2,PKIB,PTPRK,RNF146,RNF217,RSPO3,SERINC1,SMPDL3A,SOGA3,THEMIS,TPD52L1,TRDN,TRMT11"
TCGA.AG.3909.01A	6	122774864	123100880	9	0.36	NEUTRAL	NA	3	"FABP7,PKIB,SERINC1"
TCGA.AG.A00C.01A	6	123100880	123332082	13	0.183	NEUTRAL	NA	3	"CLVS2,FABP7,SMPDL3A"
TCGA.AG.3909.01A	6	123101418	123332082	13	-0.4876	NEUTRAL	NA	3	"CLVS2,FABP7,SMPDL3A"
TCGA.AA.3861.01A	6	123102190	131903712	359	-0.4254	NEUTRAL	NA	32	"AKAP7,ARG1,ARHGAP18,C6orf58,CENPW,CLVS2,ECHDC1,EPB41L2,FABP7,HDDC2,HEY2,HINT3,KIAA0408,L3MBTL3,LAMA2,MED23,NCOA7,NKAIN2,PTPRK,RNF146,RNF217,RSPO3,SAMD3,SMLR1,SMPDL3A,SOGA3,THEMIS,TMEM200A,TMEM244,TPD52L1,TRDN,TRMT11"
TCGA.CK.5914.01A	6	123116774	123332082	11	-0.2707	NEUTRAL	NA	2	"CLVS2,SMPDL3A"
TCGA.A6.2686	6	123336138	170918030	16453	0.146	NEUTRAL	NA	213	Too-Many
TCGA.AG.3909.01A	6	123369728	125598209	60	0.3372	NEUTRAL	NA	6	"CLVS2,HDDC2,NKAIN2,RNF217,TPD52L1,TRDN"
TCGA.AG.A00C.01A	6	123369728	125598209	60	-0.1804	NEUTRAL	NA	6	"CLVS2,HDDC2,NKAIN2,RNF217,TPD52L1,TRDN"
TCGA.AA.A00F.01A	6	123369728	126070878	26	0.0181	NEUTRAL	NA	7	"CLVS2,HDDC2,HEY2,NKAIN2,RNF217,TPD52L1,TRDN"
TCGA.AG.3891.01A	6	123580692	133078518	449	-0.2414	NEUTRAL	NA	45	"AKAP7,ARG1,ARHGAP18,C6orf58,CENPW,CTAGE9,CTGF,ECHDC1,ENPP1,ENPP3,EPB41L2,HDDC2,HEY2,HINT3,KIAA0408,L3MBTL3,LAMA2,MED23,MOXD1,NCOA7,NKAIN2,OR2A4,PTPRK,RNF146,RNF217,RSPO3,SAMD3,SMLR1,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,THEMIS,TMEM200A,TMEM244,TPD52L1,TRDN,TRMT11,VNN1,VNN2,VNN3"
TCGA.AA.3862.01A	6	123868415	132014610	350	-0.4631	NEUTRAL	NA	30	"AKAP7,ARG1,ARHGAP18,C6orf58,CENPW,ECHDC1,ENPP3,EPB41L2,HDDC2,HEY2,HINT3,KIAA0408,L3MBTL3,LAMA2,MED23,NCOA7,NKAIN2,PTPRK,RNF146,RNF217,RSPO3,SAMD3,SMLR1,SOGA3,THEMIS,TMEM200A,TMEM244,TPD52L1,TRDN,TRMT11"
TCGA.EI.6883	6	124057703	124315586	106	-0.0271	NEUTRAL	NA	1	NKAIN2
TCGA.DM.A1HB	6	124650047	127953989	889	-0.0383	NEUTRAL	NA	15	"C6orf58,CENPW,ECHDC1,HDDC2,HEY2,HINT3,KIAA0408,NCOA7,NKAIN2,RNF146,RNF217,RSPO3,SOGA3,TPD52L1,TRMT11"
TCGA.AA.3967.01A	6	124676356	168280992	2050	-0.3308	NEUTRAL	NA	195	Too-Many
TCGA.AU.6004	6	124678170	125419898	290	-0.3354	NEUTRAL	NA	2	"NKAIN2,RNF217"
TCGA.D5.6932	6	125340590	162377827	12275	0.0721	NEUTRAL	NA	176	Too-Many
TCGA.AA.3870	6	125365004	159282858	11014	0.0036	NEUTRAL	NA	156	Too-Many
TCGA.AU.6004	6	125434357	170918030	15633	0.0109	NEUTRAL	NA	209	Too-Many
TCGA.AG.3909.01A	6	126080225	127774941	53	0.1388	NEUTRAL	NA	10	"CENPW,ECHDC1,HEY2,HINT3,KIAA0408,NCOA7,RNF146,RSPO3,SOGA3,TRMT11"
TCGA.AG.A00C.01A	6	126080225	133091355	395	-0.212	NEUTRAL	NA	41	"AKAP7,ARG1,ARHGAP18,C6orf58,CENPW,CTAGE9,CTGF,ECHDC1,ENPP1,ENPP3,EPB41L2,HEY2,HINT3,KIAA0408,L3MBTL3,LAMA2,MED23,MOXD1,NCOA7,OR2A4,PTPRK,RNF146,RSPO3,SAMD3,SLC18B1,SMLR1,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,THEMIS,TMEM200A,TMEM244,TRMT11,VNN1,VNN2,VNN3"
TCGA.AA.A00F.01A	6	126080225	144416326	712	0.0838	NEUTRAL	NA	89	"ABRACL,ADAT2,ADGRG6,AHI1,AIG1,AKAP7,ALDH8A1,ARFGEF3,ARG1,ARHGAP18,BCLAF1,C6orf58,CCDC28A,CENPW,CITED2,CTAGE9,CTGF,ECHDC1,ECT2L,ENPP1,ENPP3,EPB41L2,EYA4,FUCA2,HBS1L,HEBP2,HECA,HEY2,HINT3,HIVEP2,IFNGR1,IL20RA,IL22RA2,KIAA0408,L3MBTL3,LAMA2,LOC100507462,LTV1,MAP3K5,MAP7,MED23,MOXD1,MTFR2,MYB,NCOA7,NHSL1,NMBR,OLIG3,OR2A4,PBOV1,PDE7B,PERP,PEX3,PEX7,PHACTR2,PLAGL1,PTPRK,REPS1,RNF146,RPS12,RSPO3,SAMD3,SF3B5,SGK1,SLC18B1,SLC2A12,SLC35D3,SMLR1,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,THEMIS,TMEM200A,TMEM244,TNFAIP3,TRMT11,TXLNB,VNN1,VNN2,VNN3,VTA1,ZC2HC1B"
TCGA.AG.4009.01A	6	126136427	127774941	52	-0.1238	NEUTRAL	NA	9	"CENPW,ECHDC1,HINT3,KIAA0408,NCOA7,RNF146,RSPO3,SOGA3,TRMT11"
TCGA.AG.3611.01A	6	126176173	132793379	344	-0.2149	NEUTRAL	NA	30	"AKAP7,ARG1,ARHGAP18,C6orf58,CENPW,CTAGE9,CTGF,ECHDC1,ENPP1,ENPP3,EPB41L2,HINT3,KIAA0408,L3MBTL3,LAMA2,MED23,MOXD1,NCOA7,OR2A4,PTPRK,RNF146,RSPO3,SAMD3,SMLR1,SOGA3,STX7,THEMIS,TMEM200A,TMEM244,TRMT11"
TCGA.AA.3518	6	127407626	170918030	15261	0.0067	NEUTRAL	NA	202	Too-Many
TCGA.CK.5914.01A	6	127794375	127912641	13	-0.1607	NEUTRAL	NA	2	"C6orf58,SOGA3"
TCGA.AG.4009.01A	6	127836647	132211443	286	-0.0513	NEUTRAL	NA	19	"AKAP7,ARG1,ARHGAP18,C6orf58,CTAGE9,ENPP1,ENPP3,EPB41L2,L3MBTL3,LAMA2,MED23,OR2A4,PTPRK,SAMD3,SMLR1,SOGA3,THEMIS,TMEM200A,TMEM244"
TCGA.AG.3909.01A	6	127898302	129380882	50	0.3104	NEUTRAL	NA	4	"C6orf58,LAMA2,PTPRK,THEMIS"
TCGA.EI.6883	6	128011792	135983114	2678	0.0149	NEUTRAL	NA	40	"AHI1,AKAP7,ALDH8A1,ARG1,ARHGAP18,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,EYA4,HBS1L,L3MBTL3,LAMA2,MED23,MOXD1,MYB,OR2A4,PTPRK,RPS12,SAMD3,SGK1,SLC18B1,SLC2A12,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,THEMIS,TMEM200A,TMEM244,VNN1,VNN2,VNN3"
TCGA.AA.A00N.01A	6	128316314	128383530	9	-0.1238	NEUTRAL	NA	1	PTPRK
TCGA.D5.6929	6	128333591	128745589	99	-0.1237	NEUTRAL	NA	1	PTPRK
TCGA.CK.4948.01B	6	128399928	135709044	414	0.0433	NEUTRAL	NA	39	"AHI1,AKAP7,ALDH8A1,ARG1,ARHGAP18,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,EYA4,HBS1L,L3MBTL3,LAMA2,MED23,MOXD1,MYB,OR2A4,PTPRK,RPS12,SAMD3,SGK1,SLC18B1,SLC2A12,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TMEM200A,TMEM244,VNN1,VNN2,VNN3"
TCGA.DM.A1HB	6	128432429	157956466	9624	-0.0095	NEUTRAL	NA	132	Too-Many
TCGA.CM.6164	6	128740068	131188311	898	0.1801	NEUTRAL	NA	9	"ARHGAP18,EPB41L2,L3MBTL3,LAMA2,PTPRK,SAMD3,SMLR1,TMEM200A,TMEM244"
TCGA.D5.6929	6	128758771	162128542	11318	0.2818	NEUTRAL	NA	161	Too-Many
TCGA.EI.7002	6	128798980	129790435	309	-0.0054	NEUTRAL	NA	2	"LAMA2,PTPRK"
TCGA.AA.3848	6	128816887	147171499	5794	0.0315	NEUTRAL	NA	85	"ABRACL,ADAT2,ADGB,ADGRG6,AHI1,AIG1,AKAP7,ALDH8A1,ARFGEF3,ARG1,ARHGAP18,BCLAF1,CCDC28A,CITED2,CTAGE9,CTGF,ECT2L,ENPP1,ENPP3,EPB41L2,EPM2A,EYA4,FBXO30,FUCA2,GRM1,HBS1L,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,L3MBTL3,LAMA2,LOC100507462,LTV1,MAP3K5,MAP7,MED23,MOXD1,MTFR2,MYB,NHSL1,NMBR,OLIG3,OR2A4,PBOV1,PDE7B,PERP,PEX3,PEX7,PHACTR2,PLAGL1,PTPRK,RAB32,REPS1,RPS12,SAMD3,SF3B5,SGK1,SHPRH,SLC18B1,SLC2A12,SLC35D3,SMLR1,STX11,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TMEM200A,TMEM244,TNFAIP3,TXLNB,UTRN,VNN1,VNN2,VNN3,VTA1,ZC2HC1B"
TCGA.CK.5914.01A	6	128840121	129511332	13	0.0403	NEUTRAL	NA	2	"LAMA2,PTPRK"
TCGA.AG.3574	6	129009592	170918030	14886	-0.0113	NEUTRAL	NA	194	Too-Many
TCGA.F5.6814	6	129045988	170918030	14842	0.0264	NEUTRAL	NA	194	Too-Many
TCGA.DM.A1D7	6	129070176	170918030	14870	-0.0972	NEUTRAL	NA	194	Too-Many
TCGA.A6.5667	6	129295410	170918030	14798	0.0103	NEUTRAL	NA	194	Too-Many
TCGA.AG.3909.01A	6	129498804	134373465	322	0.3427	NEUTRAL	NA	33	"AKAP7,ARG1,ARHGAP18,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,EYA4,L3MBTL3,LAMA2,MED23,MOXD1,OR2A4,RPS12,SAMD3,SLC18B1,SLC2A12,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TMEM200A,TMEM244,VNN1,VNN2,VNN3"
TCGA.CK.5914.01A	6	129608960	129641632	8	-0.0335	NEUTRAL	NA	1	LAMA2
TCGA.AG.4008	6	129717226	133311348	1339	-0.441	NEUTRAL	NA	29	"AKAP7,ARG1,ARHGAP18,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,L3MBTL3,LAMA2,MED23,MOXD1,OR2A4,RPS12,SAMD3,SLC18B1,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TMEM200A,TMEM244,VNN1,VNN2,VNN3"
TCGA.AA.3850	6	129932893	130064726	78	0.28505	NEUTRAL	NA	1	ARHGAP18
TCGA.AA.3844	6	129974181	140105502	3494	-0.1118	NEUTRAL	NA	62	"ABRACL,AHI1,AKAP7,ALDH8A1,ARFGEF3,ARG1,ARHGAP18,BCLAF1,CCDC28A,CITED2,CTAGE9,CTGF,ECT2L,ENPP1,ENPP3,EPB41L2,EYA4,HBS1L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,L3MBTL3,LOC100507462,MAP3K5,MAP7,MED23,MOXD1,MTFR2,MYB,NHSL1,OLIG3,OR2A4,PBOV1,PDE7B,PERP,PEX7,REPS1,RPS12,SAMD3,SGK1,SLC18B1,SLC2A12,SLC35D3,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TMEM200A,TMEM244,TNFAIP3,TXLNB,VNN1,VNN2,VNN3"
TCGA.AG.A01W.01A	6	129992165	130405492	11	0.2142	NEUTRAL	NA	3	"ARHGAP18,L3MBTL3,TMEM244"
TCGA.AA.3850	6	130066976	130181779	69	-0.30615	NEUTRAL	NA	1	TMEM244
TCGA.AA.A00D.01A	6	130164615	130441965	21	0.0591	NEUTRAL	NA	2	"L3MBTL3,TMEM244"
TCGA.EI.6508	6	130178039	149339253	6138	0.045	NEUTRAL	NA	86	"ABRACL,ADAT2,ADGB,ADGRG6,AHI1,AIG1,AKAP7,ALDH8A1,ARFGEF3,ARG1,BCLAF1,CCDC28A,CITED2,CTAGE9,CTGF,ECT2L,ENPP1,ENPP3,EPB41L2,EPM2A,EYA4,FBXO30,FUCA2,GRM1,HBS1L,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,L3MBTL3,LOC100507462,LTV1,MAP3K5,MAP7,MED23,MOXD1,MTFR2,MYB,NHSL1,NMBR,OLIG3,OR2A4,PBOV1,PDE7B,PERP,PEX3,PEX7,PHACTR2,PLAGL1,RAB32,REPS1,RPS12,SAMD3,SAMD5,SASH1,SF3B5,SGK1,SHPRH,SLC18B1,SLC2A12,SLC35D3,SMLR1,STX11,STX7,STXBP5,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TMEM200A,TMEM244,TNFAIP3,TXLNB,UST,UTRN,VNN1,VNN2,VNN3,VTA1,ZC2HC1B"
TCGA.AA.3850	6	130207073	130358943	45	-0.33925	NEUTRAL	NA	1	L3MBTL3
TCGA.AA.3850	6	130361899	130713723	122	0.06325	NEUTRAL	NA	3	"L3MBTL3,SAMD3,TMEM200A"
TCGA.AG.A01W.01A	6	130412074	130429182	8	-0.4019	NEUTRAL	NA	1	L3MBTL3
TCGA.AA.A00D.01A	6	130454550	131277142	34	-0.4571	NEUTRAL	NA	5	"EPB41L2,L3MBTL3,SAMD3,SMLR1,TMEM200A"
TCGA.AG.A01W.01A	6	130455535	131232395	24	0.0578	NEUTRAL	NA	5	"EPB41L2,L3MBTL3,SAMD3,SMLR1,TMEM200A"
TCGA.AA.3509.01A	6	130465633	136570120	329	0.1201	NEUTRAL	NA	36	"AHI1,AKAP7,ALDH8A1,ARG1,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,EYA4,HBS1L,MED23,MOXD1,MTFR2,MYB,OR2A4,PDE7B,RPS12,SAMD3,SGK1,SLC18B1,SLC2A12,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TMEM200A,VNN1,VNN2,VNN3"
TCGA.AZ.4684.01A	6	130465633	136570120	329	0.3006	NEUTRAL	NA	36	"AHI1,AKAP7,ALDH8A1,ARG1,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,EYA4,HBS1L,MED23,MOXD1,MTFR2,MYB,OR2A4,PDE7B,RPS12,SAMD3,SGK1,SLC18B1,SLC2A12,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TMEM200A,VNN1,VNN2,VNN3"
TCGA.AA.3850	6	130726667	132284166	520	0.00275	NEUTRAL	NA	11	"AKAP7,ARG1,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,MED23,OR2A4,SMLR1,TMEM200A"
TCGA.F4.6854	6	131182045	132457917	393	0.0203	NEUTRAL	NA	9	"AKAP7,ARG1,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,MED23,OR2A4"
TCGA.CM.6164	6	131189516	170918030	14042	-0.159	NEUTRAL	NA	187	Too-Many
TCGA.CK.5914.01A	6	131225556	131481152	7	0.1608	NEUTRAL	NA	2	"AKAP7,EPB41L2"
TCGA.AG.A01W.01A	6	131289411	131527899	6	-0.3016	NEUTRAL	NA	2	"AKAP7,EPB41L2"
TCGA.AA.3841	6	131326068	170918030	14024	-0.3858	NEUTRAL	NA	187	Too-Many
TCGA.AZ.6608	6	131448831	170918030	13928	-0.035	NEUTRAL	NA	186	Too-Many
TCGA.AA.A00D.01A	6	131466452	144507718	494	-0.1227	NEUTRAL	NA	69	"ABRACL,ADAT2,ADGRG6,AHI1,AIG1,AKAP7,ALDH8A1,ARFGEF3,ARG1,BCLAF1,CCDC28A,CITED2,CTAGE9,CTGF,ECT2L,ENPP1,ENPP3,EYA4,FUCA2,HBS1L,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,LOC100507462,LTV1,MAP3K5,MAP7,MED23,MOXD1,MTFR2,MYB,NHSL1,NMBR,OLIG3,OR2A4,PBOV1,PDE7B,PERP,PEX3,PEX7,PHACTR2,PLAGL1,REPS1,RPS12,SF3B5,SGK1,SLC18B1,SLC2A12,SLC35D3,STX11,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TNFAIP3,TXLNB,VNN1,VNN2,VNN3,VTA1,ZC2HC1B"
TCGA.AG.A01W.01A	6	131531900	131983417	38	0.3297	NEUTRAL	NA	4	"AKAP7,ARG1,ENPP3,MED23"
TCGA.A6.3808.01A	6	131904158	132006930	44	-0.16	NEUTRAL	NA	3	"ARG1,ENPP3,MED23"
TCGA.CK.5914.01A	6	131939495	131948479	7	-0.0424	NEUTRAL	NA	1	MED23
TCGA.AA.3861.01A	6	131944452	132014610	18	-0.2668	NEUTRAL	NA	2	"ENPP3,MED23"
TCGA.AG.A01W.01A	6	131984667	132056293	19	-0.1877	NEUTRAL	NA	3	"CTAGE9,ENPP3,OR2A4"
TCGA.CK.5914.01A	6	132021601	132043320	11	0.021	NEUTRAL	NA	3	"CTAGE9,ENPP3,OR2A4"
TCGA.A6.3808.01A	6	132039749	144858681	600	0.253	NEUTRAL	NA	65	"ABRACL,ADAT2,ADGRG6,AHI1,AIG1,ALDH8A1,ARFGEF3,BCLAF1,CCDC28A,CITED2,CTGF,ECT2L,ENPP1,ENPP3,EYA4,FUCA2,HBS1L,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,LOC100507462,LTV1,MAP3K5,MAP7,MOXD1,MTFR2,MYB,NHSL1,NMBR,OLIG3,PBOV1,PDE7B,PERP,PEX3,PEX7,PHACTR2,PLAGL1,REPS1,RPS12,SF3B5,SGK1,SLC18B1,SLC2A12,SLC35D3,STX11,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TNFAIP3,TXLNB,UTRN,VNN1,VNN2,VNN3,VTA1,ZC2HC1B"
TCGA.AA.3861.01A	6	132039749	170892551	1992	-0.1893	NEUTRAL	NA	181	Too-Many
TCGA.AA.3862.01A	6	132039749	170892551	2000	-0.3374	NEUTRAL	NA	181	Too-Many
TCGA.AG.A01W.01A	6	132063255	132109573	17	0.21	NEUTRAL	NA	1	ENPP3
TCGA.AG.A01W.01A	6	132210570	132227647	10	-0.1411	NEUTRAL	NA	1	ENPP1
TCGA.CK.5914.01A	6	132211443	132271041	3	-0.211	NEUTRAL	NA	2	"CTGF,ENPP1"
TCGA.AA.3850	6	132289156	132967075	273	-0.35445	NEUTRAL	NA	8	"MOXD1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9"
TCGA.AG.4009.01A	6	132618241	135375707	127	-0.0682	NEUTRAL	NA	20	"ALDH8A1,EYA4,HBS1L,MOXD1,RPS12,SGK1,SLC18B1,SLC2A12,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,VNN1,VNN2,VNN3"
TCGA.AF.3914.01A	6	132618241	160103478	1306	-0.1653	NEUTRAL	NA	129	Too-Many
TCGA.CM.5863	6	132623183	170918030	13592	0.0937	NEUTRAL	NA	178	Too-Many
TCGA.AA.3842	6	132644034	170918030	13595	0.3362	NEUTRAL	NA	178	Too-Many
TCGA.CK.5914.01A	6	132693702	132713300	4	-0.2975	NEUTRAL	NA	1	MOXD1
TCGA.AA.3811	6	132720622	140063978	2511	0.3463	NEUTRAL	NA	47	"ABRACL,AHI1,ALDH8A1,ARFGEF3,BCLAF1,CCDC28A,CITED2,ECT2L,EYA4,HBS1L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,MOXD1,MTFR2,MYB,NHSL1,OLIG3,PBOV1,PDE7B,PERP,PEX7,REPS1,RPS12,SGK1,SLC18B1,SLC2A12,SLC35D3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TNFAIP3,TXLNB,VNN1,VNN2,VNN3"
TCGA.AG.A01W.01A	6	132826776	133115267	32	0.0641	NEUTRAL	NA	11	"SLC18B1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,VNN1,VNN2,VNN3"
TCGA.AG.3611.01A	6	132938250	149730701	519	-0.1951	NEUTRAL	NA	68	"ABRACL,ADAT2,ADGB,ADGRG6,AHI1,AIG1,ALDH8A1,ARFGEF3,BCLAF1,CCDC28A,CITED2,ECT2L,EPM2A,EYA4,FBXO30,FUCA2,GRM1,HBS1L,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,LOC100507462,LTV1,MAP3K5,MAP7,MTFR2,MYB,NHSL1,NMBR,OLIG3,PBOV1,PDE7B,PERP,PEX3,PEX7,PHACTR2,PLAGL1,RAB32,REPS1,RPS12,SAMD5,SASH1,SF3B5,SGK1,SHPRH,SLC18B1,SLC2A12,SLC35D3,STX11,STXBP5,SUMO4,TAAR1,TAAR2,TAB2,TBPL1,TCF21,TNFAIP3,TXLNB,UST,UTRN,VNN1,VNN2,VNN3,VTA1,ZC2HC1B"
TCGA.AA.3850	6	132974819	133168462	101	0.23225	NEUTRAL	NA	5	"RPS12,SLC18B1,VNN1,VNN2,VNN3"
TCGA.AA.3982	6	132989458	133160343	92	0.1614	NEUTRAL	NA	5	"RPS12,SLC18B1,VNN1,VNN2,VNN3"
TCGA.AY.6196	6	133059704	133129597	27	0.0229	NEUTRAL	NA	2	"SLC18B1,VNN2"
TCGA.AA.A00L.01A	6	133072237	133703453	23	0.2194	NEUTRAL	NA	4	"EYA4,RPS12,SLC18B1,VNN2"
TCGA.EI.7002	6	133077239	137403293	1392	0.0236	NEUTRAL	NA	20	"AHI1,ALDH8A1,BCLAF1,EYA4,HBS1L,IL20RA,MAP3K5,MAP7,MTFR2,MYB,PDE7B,PEX7,RPS12,SGK1,SLC18B1,SLC2A12,SLC35D3,TBPL1,TCF21,VNN2"
TCGA.CM.6165.01A	6	133091967	133118079	11	-0.3136	NEUTRAL	NA	1	SLC18B1
TCGA.AG.A00C.01A	6	133091967	133595836	16	0.1145	NEUTRAL	NA	3	"EYA4,RPS12,SLC18B1"
TCGA.AG.3891.01A	6	133105025	152583130	853	-0.1328	NEUTRAL	NA	88	"ABRACL,ADAT2,ADGB,ADGRG6,AHI1,AIG1,AKAP12,ALDH8A1,ARFGEF3,ARMT1,BCLAF1,CCDC170,CCDC28A,CITED2,ECT2L,EPM2A,ESR1,EYA4,FBXO30,FUCA2,GINM1,GRM1,HBS1L,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,IYD,KATNA1,LATS1,LOC100507462,LRP11,LTV1,MAP3K5,MAP7,MTFR2,MTHFD1L,MYB,NHSL1,NMBR,NUP43,OLIG3,PBOV1,PCMT1,PDE7B,PERP,PEX3,PEX7,PHACTR2,PLAGL1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,REPS1,RMND1,RPS12,SAMD5,SASH1,SF3B5,SGK1,SHPRH,SLC18B1,SLC2A12,SLC35D3,STX11,STXBP5,SUMO4,SYNE1,TAB2,TBPL1,TCF21,TNFAIP3,TXLNB,ULBP1,ULBP2,ULBP3,UST,UTRN,VTA1,ZBTB2,ZC2HC1B,ZC3H12D"
TCGA.AA.A02E.01A	6	133105025	158873114	1143	0.3609	NEUTRAL	NA	109	Too-Many
TCGA.CK.5914.01A	6	133108526	133138618	9	-0.3812	NEUTRAL	NA	2	"RPS12,SLC18B1"
TCGA.AG.A01W.01A	6	133118649	133146749	10	-0.4073	NEUTRAL	NA	2	"RPS12,SLC18B1"
TCGA.CM.6165.01A	6	133119475	170893340	1929	0.0293	NEUTRAL	NA	167	Too-Many
TCGA.AG.A01W.01A	6	133150250	133159773	4	0.1559	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	6	133161169	133462874	6	-0.2917	NEUTRAL	NA	0	None
TCGA.AA.3982	6	133164050	133281139	44	-0.2024	NEUTRAL	NA	0	None
TCGA.AA.3850	6	133168850	134199178	354	-0.37785	NEUTRAL	NA	1	EYA4
TCGA.AA.3982	6	133284344	134199178	308	-0.279	NEUTRAL	NA	1	EYA4
TCGA.AG.4008	6	133312221	133864249	186	0.0062	NEUTRAL	NA	1	EYA4
TCGA.F4.6854	6	133380998	136284475	958	0.0206	NEUTRAL	NA	10	"AHI1,ALDH8A1,EYA4,HBS1L,MYB,PDE7B,SGK1,SLC2A12,TBPL1,TCF21"
TCGA.AG.A01W.01A	6	133468902	134254493	21	0.2994	NEUTRAL	NA	2	"EYA4,TCF21"
TCGA.AG.A00C.01A	6	133703453	134373465	27	-0.2564	NEUTRAL	NA	4	"EYA4,SLC2A12,TBPL1,TCF21"
TCGA.CM.4747	6	133715209	170918030	13171	-0.0128	NEUTRAL	NA	165	Too-Many
TCGA.AY.6196	6	133727420	163920572	10156	-0.0146	NEUTRAL	NA	133	Too-Many
TCGA.AA.A00L.01A	6	133767717	144164517	325	-0.1574	NEUTRAL	NA	44	"ABRACL,ADAT2,ADGRG6,AHI1,AIG1,ALDH8A1,ARFGEF3,BCLAF1,CCDC28A,CITED2,ECT2L,EYA4,FUCA2,HBS1L,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,LOC100507462,LTV1,MAP3K5,MAP7,MTFR2,MYB,NHSL1,NMBR,OLIG3,PBOV1,PDE7B,PERP,PEX3,PEX7,PHACTR2,REPS1,SGK1,SLC2A12,SLC35D3,TBPL1,TCF21,TNFAIP3,TXLNB,VTA1"
TCGA.AG.4008	6	133864457	133890194	13	-0.4526	NEUTRAL	NA	0	None
TCGA.AG.4008	6	133895280	134129707	68	0.0933	NEUTRAL	NA	0	None
TCGA.AG.4008	6	134129824	137264164	966	-0.4398	NEUTRAL	NA	15	"AHI1,ALDH8A1,BCLAF1,HBS1L,MAP3K5,MAP7,MTFR2,MYB,PDE7B,PEX7,SGK1,SLC2A12,SLC35D3,TBPL1,TCF21"
TCGA.AA.3941	6	134198816	135827672	519	-0.2207	NEUTRAL	NA	8	"AHI1,ALDH8A1,HBS1L,MYB,SGK1,SLC2A12,TBPL1,TCF21"
TCGA.AA.A00N.01A	6	134210573	134373465	11	0.3134	NEUTRAL	NA	3	"SLC2A12,TBPL1,TCF21"
TCGA.AA.3982	6	134214226	135658249	487	0.1433	NEUTRAL	NA	8	"AHI1,ALDH8A1,HBS1L,MYB,SGK1,SLC2A12,TBPL1,TCF21"
TCGA.AA.3850	6	134214226	135669523	488	0.18675	NEUTRAL	NA	8	"AHI1,ALDH8A1,HBS1L,MYB,SGK1,SLC2A12,TBPL1,TCF21"
TCGA.AG.A01W.01A	6	134342927	134369603	8	-0.2206	NEUTRAL	NA	1	SLC2A12
TCGA.AG.A01W.01A	6	134391172	134540477	11	0.3431	NEUTRAL	NA	1	SGK1
TCGA.A6.6648	6	134459988	134466905	7	0.2986	NEUTRAL	NA	0	None
TCGA.AA.A01Q.01A	6	134491919	134495600	8	-0.3946	NEUTRAL	NA	1	SGK1
TCGA.CK.5914.01A	6	134496645	135286325	13	0.2302	NEUTRAL	NA	3	"ALDH8A1,HBS1L,SGK1"
TCGA.AG.A00C.01A	6	134528430	137525420	173	-0.0436	NEUTRAL	NA	15	"AHI1,ALDH8A1,BCLAF1,HBS1L,IFNGR1,IL20RA,IL22RA2,MAP3K5,MAP7,MTFR2,MYB,PDE7B,PEX7,SGK1,SLC35D3"
TCGA.AG.3909.01A	6	134528430	137540331	177	0.1841	NEUTRAL	NA	15	"AHI1,ALDH8A1,BCLAF1,HBS1L,IFNGR1,IL20RA,IL22RA2,MAP3K5,MAP7,MTFR2,MYB,PDE7B,PEX7,SGK1,SLC35D3"
TCGA.A6.6648	6	134537447	134953296	156	0.3576	NEUTRAL	NA	1	SGK1
TCGA.AG.A01W.01A	6	134570137	135329122	12	-0.2349	NEUTRAL	NA	3	"ALDH8A1,HBS1L,SGK1"
TCGA.A6.6648	6	134962153	170918030	12755	-0.0038	NEUTRAL	NA	160	Too-Many
TCGA.AA.3560	6	135275484	170918030	12644	-0.0415	NEUTRAL	NA	159	Too-Many
TCGA.AA.A01Q.01A	6	135286325	137814498	138	0.1216	NEUTRAL	NA	14	"AHI1,BCLAF1,HBS1L,IFNGR1,IL20RA,IL22RA2,MAP3K5,MAP7,MTFR2,MYB,OLIG3,PDE7B,PEX7,SLC35D3"
TCGA.AG.A01W.01A	6	135332033	136784481	106	0.27	NEUTRAL	NA	7	"AHI1,BCLAF1,HBS1L,MAP7,MTFR2,MYB,PDE7B"
TCGA.CK.5914.01A	6	135357664	135375707	7	0.1676	NEUTRAL	NA	1	HBS1L
TCGA.G4.6626	6	135486506	162255534	9034	0.0426	NEUTRAL	NA	124	Too-Many
TCGA.CK.5914.01A	6	135514920	135524303	8	0.1226	NEUTRAL	NA	1	MYB
TCGA.AA.A00N.01A	6	135516839	136588130	58	0.375	NEUTRAL	NA	5	"AHI1,BCLAF1,MTFR2,MYB,PDE7B"
TCGA.AG.4009.01A	6	135516839	137041537	108	-0.0257	NEUTRAL	NA	7	"AHI1,BCLAF1,MAP3K5,MAP7,MTFR2,MYB,PDE7B"
TCGA.AG.3906.01A	6	135518148	135709044	14	0.2296	NEUTRAL	NA	2	"AHI1,MYB"
TCGA.AA.A010.01A	6	135538950	136871417	76	0.1424	NEUTRAL	NA	6	"AHI1,BCLAF1,MAP7,MTFR2,MYB,PDE7B"
TCGA.AA.3854	6	135596831	170918030	12549	-0.213	NEUTRAL	NA	157	Too-Many
TCGA.AZ.4614	6	135632624	170918030	12380	0.2249	NEUTRAL	NA	157	Too-Many
TCGA.AA.3982	6	135669523	136240615	161	-0.3573	NEUTRAL	NA	2	"AHI1,PDE7B"
TCGA.AA.3850	6	135672210	136457040	225	-0.43295	NEUTRAL	NA	2	"AHI1,PDE7B"
TCGA.AG.3906.01A	6	135715864	150092260	569	-0.0488	NEUTRAL	NA	60	"ABRACL,ADAT2,ADGB,ADGRG6,AHI1,AIG1,ARFGEF3,BCLAF1,CCDC28A,CITED2,ECT2L,EPM2A,FBXO30,FUCA2,GINM1,GRM1,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,KATNA1,LATS1,LOC100507462,LTV1,MAP3K5,MAP7,MTFR2,NHSL1,NMBR,NUP43,OLIG3,PBOV1,PCMT1,PDE7B,PERP,PEX3,PEX7,PHACTR2,PLAGL1,PPIL4,RAB32,REPS1,SAMD5,SASH1,SF3B5,SHPRH,SLC35D3,STX11,STXBP5,SUMO4,TAB2,TNFAIP3,TXLNB,UST,UTRN,VTA1,ZC2HC1B,ZC3H12D"
TCGA.CK.4948.01B	6	135752298	136560592	31	0.1492	NEUTRAL	NA	3	"AHI1,MTFR2,PDE7B"
TCGA.CK.5914.01A	6	135784211	135813269	6	-0.2202	NEUTRAL	NA	1	AHI1
TCGA.AA.A017.01A	6	135786904	139583668	212	-0.2329	NEUTRAL	NA	25	"ABRACL,AHI1,ARFGEF3,BCLAF1,CCDC28A,ECT2L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,MTFR2,NHSL1,OLIG3,PBOV1,PDE7B,PERP,PEX7,REPS1,SLC35D3,TNFAIP3,TXLNB"
TCGA.AA.3982	6	136241576	140079638	1286	0.0774	NEUTRAL	NA	25	"ABRACL,ARFGEF3,BCLAF1,CCDC28A,CITED2,ECT2L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,MTFR2,NHSL1,OLIG3,PBOV1,PDE7B,PERP,PEX7,REPS1,SLC35D3,TNFAIP3,TXLNB"
TCGA.EI.6883	6	136315883	162465703	8851	0.0122	NEUTRAL	NA	122	Too-Many
TCGA.AA.3850	6	136471799	136482461	10	-0.01285	NEUTRAL	NA	1	PDE7B
TCGA.AA.3850	6	136501616	140014201	1195	0.16165	NEUTRAL	NA	25	"ABRACL,ARFGEF3,BCLAF1,CCDC28A,CITED2,ECT2L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,MTFR2,NHSL1,OLIG3,PBOV1,PDE7B,PERP,PEX7,REPS1,SLC35D3,TNFAIP3,TXLNB"
TCGA.AA.3941	6	136513540	140024344	1187	-0.1975	NEUTRAL	NA	25	"ABRACL,ARFGEF3,BCLAF1,CCDC28A,CITED2,ECT2L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,MTFR2,NHSL1,OLIG3,PBOV1,PDE7B,PERP,PEX7,REPS1,SLC35D3,TNFAIP3,TXLNB"
TCGA.CK.4948.01B	6	136562592	136570120	4	-0.2985	NEUTRAL	NA	1	MTFR2
TCGA.AA.3509.01A	6	136594173	139106337	149	0.07	NEUTRAL	NA	17	"ARFGEF3,BCLAF1,CCDC28A,HEBP2,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,NHSL1,OLIG3,PBOV1,PERP,PEX7,SLC35D3,TNFAIP3"
TCGA.AZ.4684.01A	6	136594173	142519539	215	0.1392	NEUTRAL	NA	25	"ABRACL,ARFGEF3,BCLAF1,CCDC28A,CITED2,ECT2L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,NHSL1,NMBR,OLIG3,PBOV1,PERP,PEX7,REPS1,SLC35D3,TNFAIP3,TXLNB,VTA1"
TCGA.CK.5914.01A	6	136600879	137814498	80	0.2897	NEUTRAL	NA	9	"BCLAF1,IFNGR1,IL20RA,IL22RA2,MAP3K5,MAP7,OLIG3,PEX7,SLC35D3"
TCGA.CK.4948.01B	6	136665271	160968784	1360	-0.0612	NEUTRAL	NA	115	Too-Many
TCGA.AA.A00N.01A	6	136682101	137525420	71	0.1609	NEUTRAL	NA	7	"IFNGR1,IL20RA,IL22RA2,MAP3K5,MAP7,PEX7,SLC35D3"
TCGA.AA.A01I.01A	6	136693612	170892551	1592	0.1011	NEUTRAL	NA	153	Too-Many
TCGA.F4.6854	6	136726276	142574961	1642	0.0279	NEUTRAL	NA	24	"ABRACL,ARFGEF3,CCDC28A,CITED2,ECT2L,HEBP2,HECA,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,NHSL1,NMBR,OLIG3,PBOV1,PERP,PEX7,REPS1,SLC35D3,TNFAIP3,TXLNB,VTA1"
TCGA.AA.A010.01A	6	136901402	137041537	23	0.1381	NEUTRAL	NA	1	MAP3K5
TCGA.AG.A01W.01A	6	136920539	137569742	58	-0.0363	NEUTRAL	NA	6	"IFNGR1,IL20RA,IL22RA2,MAP3K5,PEX7,SLC35D3"
TCGA.AA.A010.01A	6	137243539	137477845	13	-0.1368	NEUTRAL	NA	3	"IL20RA,IL22RA2,SLC35D3"
TCGA.AG.4008	6	137266340	144513000	2154	0.0683	NEUTRAL	NA	32	"ABRACL,ADAT2,ADGRG6,AIG1,ARFGEF3,CCDC28A,CITED2,ECT2L,FUCA2,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,LOC100507462,LTV1,NHSL1,NMBR,OLIG3,PBOV1,PERP,PEX3,PHACTR2,PLAGL1,REPS1,SF3B5,STX11,TNFAIP3,TXLNB,VTA1,ZC2HC1B"
TCGA.AG.4009.01A	6	137295063	137528073	19	0.0384	NEUTRAL	NA	3	"IFNGR1,IL20RA,IL22RA2"
TCGA.AF.4110	6	137366410	162754605	8656	0.2167	NEUTRAL	NA	114	Too-Many
TCGA.EI.7002	6	137432973	137503596	35	0.0092	NEUTRAL	NA	1	IL22RA2
TCGA.AA.A010.01A	6	137479444	137528073	8	0.3508	NEUTRAL	NA	2	"IFNGR1,IL22RA2"
TCGA.AG.A00C.01A	6	137527226	138528119	17	0.2357	NEUTRAL	NA	5	"ARFGEF3,IFNGR1,OLIG3,PERP,TNFAIP3"
TCGA.AA.A01Q.01A	6	138192338	138201187	8	-0.5111	NEUTRAL	NA	1	TNFAIP3
TCGA.AA.A00N.01A	6	138202139	139097185	54	0.1389	NEUTRAL	NA	8	"ARFGEF3,CCDC28A,HEBP2,LOC100507462,NHSL1,PBOV1,PERP,TNFAIP3"
TCGA.AA.A01Q.01A	6	138202139	145149857	209	0.1137	NEUTRAL	NA	29	"ABRACL,ADAT2,ADGRG6,AIG1,ARFGEF3,CCDC28A,CITED2,ECT2L,FUCA2,HEBP2,HECA,HIVEP2,LOC100507462,LTV1,NHSL1,NMBR,PBOV1,PERP,PEX3,PHACTR2,PLAGL1,REPS1,SF3B5,STX11,TNFAIP3,TXLNB,UTRN,VTA1,ZC2HC1B"
TCGA.AA.3815.01A	6	138491763	170892551	1661	-0.0731	NEUTRAL	NA	143	Too-Many
TCGA.AA.A010.01A	6	138528119	138574965	8	0.1753	NEUTRAL	NA	2	"ARFGEF3,PBOV1"
TCGA.AG.4009.01A	6	138528119	144724228	203	-0.0215	NEUTRAL	NA	27	"ABRACL,ADAT2,ADGRG6,AIG1,ARFGEF3,CCDC28A,CITED2,ECT2L,FUCA2,HEBP2,HECA,HIVEP2,LOC100507462,LTV1,NHSL1,NMBR,PBOV1,PEX3,PHACTR2,PLAGL1,REPS1,SF3B5,STX11,TXLNB,UTRN,VTA1,ZC2HC1B"
TCGA.AG.A00C.01A	6	138531009	143780180	155	-0.1655	NEUTRAL	NA	19	"ABRACL,ADAT2,ADGRG6,AIG1,ARFGEF3,CCDC28A,CITED2,ECT2L,HEBP2,HECA,HIVEP2,LOC100507462,NHSL1,NMBR,PBOV1,PEX3,REPS1,TXLNB,VTA1"
TCGA.AG.A01W.01A	6	138569842	138641234	13	-0.1818	NEUTRAL	NA	1	ARFGEF3
TCGA.CK.5914.01A	6	138607036	138763090	28	-0.1498	NEUTRAL	NA	3	"ARFGEF3,HEBP2,NHSL1"
TCGA.AA.A01C.01A	6	138612868	144875802	230	0.0711	NEUTRAL	NA	26	"ABRACL,ADAT2,ADGRG6,AIG1,ARFGEF3,CCDC28A,CITED2,ECT2L,FUCA2,HEBP2,HECA,HIVEP2,LOC100507462,LTV1,NHSL1,NMBR,PEX3,PHACTR2,PLAGL1,REPS1,SF3B5,STX11,TXLNB,UTRN,VTA1,ZC2HC1B"
TCGA.AG.A01W.01A	6	138642779	138862002	35	0.3085	NEUTRAL	NA	3	"ARFGEF3,HEBP2,NHSL1"
TCGA.AG.3909.01A	6	138751376	139135618	11	-0.1732	NEUTRAL	NA	4	"CCDC28A,ECT2L,LOC100507462,NHSL1"
TCGA.CK.5914.01A	6	138768091	142704851	84	0.3261	NEUTRAL	NA	12	"ABRACL,ADGRG6,CCDC28A,CITED2,ECT2L,HECA,LOC100507462,NHSL1,NMBR,REPS1,TXLNB,VTA1"
TCGA.AG.A01W.01A	6	138934550	139239254	19	-0.1783	NEUTRAL	NA	4	"CCDC28A,ECT2L,LOC100507462,REPS1"
TCGA.AG.3909.01A	6	139159439	139268878	35	0.3601	NEUTRAL	NA	2	"ECT2L,REPS1"
TCGA.AA.3509.01A	6	139238632	142519539	38	-0.04	NEUTRAL	NA	7	"ABRACL,CITED2,HECA,NMBR,REPS1,TXLNB,VTA1"
TCGA.AG.A01W.01A	6	139243760	152835093	696	0.0972	NEUTRAL	NA	57	"ABRACL,ADAT2,ADGB,ADGRG6,AIG1,AKAP12,ARMT1,CCDC170,CITED2,EPM2A,ESR1,FBXO30,FUCA2,GINM1,GRM1,HECA,HIVEP2,IYD,KATNA1,LATS1,LRP11,LTV1,MTHFD1L,NMBR,NUP43,PCMT1,PEX3,PHACTR2,PLAGL1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,REPS1,RMND1,SAMD5,SASH1,SF3B5,SHPRH,STX11,STXBP5,SUMO4,SYNE1,TAB2,TXLNB,ULBP1,ULBP2,ULBP3,UST,UTRN,VTA1,ZBTB2,ZC2HC1B,ZC3H12D"
TCGA.AA.A010.01A	6	139264585	139498030	13	-0.1644	NEUTRAL	NA	3	"ABRACL,HECA,REPS1"
TCGA.AG.3909.01A	6	139355278	139498030	6	-0.4352	NEUTRAL	NA	2	"ABRACL,HECA"
TCGA.AG.3909.01A	6	139563624	143818488	81	0.2822	NEUTRAL	NA	10	"ADAT2,ADGRG6,AIG1,CITED2,FUCA2,HIVEP2,NMBR,PEX3,TXLNB,VTA1"
TCGA.AA.A017.01A	6	139591585	143654371	56	0.2061	NEUTRAL	NA	7	"ADGRG6,AIG1,CITED2,HIVEP2,NMBR,TXLNB,VTA1"
TCGA.AA.3850	6	140024344	140371059	100	-0.22815	NEUTRAL	NA	0	None
TCGA.AA.3811	6	140064238	142541258	479	-0.0714	NEUTRAL	NA	2	"NMBR,VTA1"
TCGA.DY.A1DG	6	140105502	162483953	7601	0.008	NEUTRAL	NA	97	"ACAT2,ADAT2,ADGB,ADGRG6,AGPAT4,AIG1,AKAP12,ARID1B,ARMT1,C6orf99,CCDC170,CLDN20,CNKSR3,DYNLT1,EPM2A,ESR1,EZR,FBXO30,FBXO5,FNDC1,FUCA2,GINM1,GRM1,GTF2H5,HIVEP2,IGF2R,IPCEF1,IYD,KATNA1,LATS1,LPA,LRP11,LTV1,MAP3K4,MAS1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NMBR,NOX3,NUP43,OPRM1,PARK2,PCMT1,PEX3,PHACTR2,PLAGL1,PLEKHG1,PLG,PNLDC1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,RGS17,RMND1,RSPH3,SAMD5,SASH1,SCAF8,SERAC1,SF3B5,SHPRH,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,STX11,STXBP5,SUMO4,SYNE1,SYNJ2,SYTL3,TAB2,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,ULBP1,ULBP2,ULBP3,UST,UTRN,VIP,VTA1,WTAP,ZBTB2,ZC2HC1B,ZC3H12D,ZDHHC14"
TCGA.AG.3890	6	141957227	170918030	10678	0.0293	NEUTRAL	NA	131	Too-Many
TCGA.AA.3850	6	142453747	143828324	444	-0.14245	NEUTRAL	NA	7	"ADAT2,ADGRG6,AIG1,FUCA2,HIVEP2,PEX3,VTA1"
TCGA.AA.3941	6	142453747	145680574	1100	-0.4438	NEUTRAL	NA	14	"ADAT2,ADGRG6,AIG1,FUCA2,HIVEP2,LTV1,PEX3,PHACTR2,PLAGL1,SF3B5,STX11,UTRN,VTA1,ZC2HC1B"
TCGA.AA.3811	6	142545279	145147051	878	0.3418	NEUTRAL	NA	13	"ADAT2,ADGRG6,AIG1,FUCA2,HIVEP2,LTV1,PEX3,PHACTR2,PLAGL1,SF3B5,STX11,UTRN,ZC2HC1B"
TCGA.AA.3982	6	142545279	154267553	4129	-0.0195	NEUTRAL	NA	55	"ADAT2,ADGB,ADGRG6,AIG1,AKAP12,ARMT1,CCDC170,EPM2A,ESR1,FBXO30,FBXO5,FUCA2,GINM1,GRM1,HIVEP2,IYD,KATNA1,LATS1,LRP11,LTV1,MTHFD1L,MTRF1L,MYCT1,NUP43,PCMT1,PEX3,PHACTR2,PLAGL1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,RGS17,RMND1,SAMD5,SASH1,SF3B5,SHPRH,STX11,STXBP5,SUMO4,SYNE1,TAB2,ULBP1,ULBP2,ULBP3,UST,UTRN,VIP,ZBTB2,ZC2HC1B,ZC3H12D"
TCGA.AA.3844	6	142549786	148288647	1806	-0.2003	NEUTRAL	NA	21	"ADAT2,ADGB,ADGRG6,AIG1,EPM2A,FBXO30,FUCA2,GRM1,HIVEP2,LTV1,PEX3,PHACTR2,PLAGL1,RAB32,SAMD5,SF3B5,SHPRH,STX11,STXBP5,UTRN,ZC2HC1B"
TCGA.F4.6854	6	142580951	144357936	629	0.3722	NEUTRAL	NA	10	"ADAT2,ADGRG6,AIG1,FUCA2,HIVEP2,LTV1,PEX3,PHACTR2,PLAGL1,ZC2HC1B"
TCGA.AA.A010.01A	6	142714964	142761968	17	-0.4797	NEUTRAL	NA	1	ADGRG6
TCGA.AA.A029.01A	6	142730937	147680213	217	0.0438	NEUTRAL	NA	20	"ADAT2,ADGB,ADGRG6,AIG1,EPM2A,FBXO30,FUCA2,GRM1,HIVEP2,LTV1,PEX3,PHACTR2,PLAGL1,RAB32,SF3B5,SHPRH,STX11,STXBP5,UTRN,ZC2HC1B"
TCGA.CK.5914.01A	6	143080882	144416326	76	0.3276	NEUTRAL	NA	10	"ADAT2,AIG1,FUCA2,HIVEP2,LTV1,PEX3,PHACTR2,PLAGL1,SF3B5,ZC2HC1B"
TCGA.AA.A017.01A	6	143660703	143795861	14	-0.4531	NEUTRAL	NA	3	"ADAT2,AIG1,PEX3"
TCGA.AG.A00C.01A	6	143784035	143828326	15	0.2981	NEUTRAL	NA	2	"FUCA2,PEX3"
TCGA.AA.3509.01A	6	143828326	145120499	108	0.0462	NEUTRAL	NA	8	"FUCA2,LTV1,PHACTR2,PLAGL1,SF3B5,STX11,UTRN,ZC2HC1B"
TCGA.AZ.4684.01A	6	143828326	145120499	108	0.2399	NEUTRAL	NA	8	"FUCA2,LTV1,PHACTR2,PLAGL1,SF3B5,STX11,UTRN,ZC2HC1B"
TCGA.AA.3850	6	143830030	144668709	323	0.23325	NEUTRAL	NA	8	"FUCA2,LTV1,PHACTR2,PLAGL1,SF3B5,STX11,UTRN,ZC2HC1B"
TCGA.G4.6311	6	143875757	170918030	10132	0.2184	NEUTRAL	NA	123	Too-Many
TCGA.AG.A00C.01A	6	143929353	144507718	28	-0.2335	NEUTRAL	NA	6	"LTV1,PHACTR2,PLAGL1,SF3B5,STX11,ZC2HC1B"
TCGA.AA.A017.01A	6	144070066	144171210	15	-0.0431	NEUTRAL	NA	2	"LTV1,PHACTR2"
TCGA.AA.A017.01A	6	144178403	144747383	18	0.3552	NEUTRAL	NA	6	"LTV1,PLAGL1,SF3B5,STX11,UTRN,ZC2HC1B"
TCGA.AA.A00L.01A	6	144262549	144507718	6	-0.4957	NEUTRAL	NA	3	"PLAGL1,SF3B5,STX11"
TCGA.F4.6854	6	144358116	147323073	856	0.0042	NEUTRAL	NA	10	"ADGB,EPM2A,FBXO30,GRM1,PLAGL1,RAB32,SF3B5,SHPRH,STX11,UTRN"
TCGA.AG.3591	6	144495242	170918030	9903	-0.2244	NEUTRAL	NA	118	Too-Many
TCGA.AG.3909.01A	6	144507718	144747383	10	-0.4632	NEUTRAL	NA	2	"STX11,UTRN"
TCGA.CK.5914.01A	6	144507718	144820341	38	-0.4471	NEUTRAL	NA	2	"STX11,UTRN"
TCGA.AA.A00L.01A	6	144508524	152456192	329	-0.0331	NEUTRAL	NA	39	"ADGB,AKAP12,ARMT1,CCDC170,EPM2A,ESR1,FBXO30,GINM1,GRM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,RMND1,SAMD5,SASH1,SHPRH,STX11,STXBP5,SUMO4,SYNE1,TAB2,ULBP1,ULBP2,ULBP3,UST,UTRN,ZBTB2,ZC3H12D"
TCGA.AG.4008	6	144515225	146802780	631	-0.4766	NEUTRAL	NA	5	"EPM2A,FBXO30,GRM1,SHPRH,UTRN"
TCGA.AG.A01N.01A	6	144612903	149691082	176	0.3633	NEUTRAL	NA	12	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SAMD5,SASH1,SHPRH,STXBP5,TAB2,UST,UTRN"
TCGA.AA.3850	6	144671638	147737795	835	-0.38715	NEUTRAL	NA	8	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SHPRH,STXBP5,UTRN"
TCGA.AA.A017.01A	6	144761440	144820341	21	0.0223	NEUTRAL	NA	1	UTRN
TCGA.AA.A010.01A	6	144768696	147830065	181	-0.1901	NEUTRAL	NA	9	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SAMD5,SHPRH,STXBP5,UTRN"
TCGA.AG.4009.01A	6	144774874	146007218	60	-0.1197	NEUTRAL	NA	2	"EPM2A,UTRN"
TCGA.AA.A02K.01A	6	144808658	159172924	791	0.0487	NEUTRAL	NA	62	"ADGB,AKAP12,ARID1B,ARMT1,CCDC170,CLDN20,CNKSR3,DYNLT1,EPM2A,ESR1,FBXO30,FBXO5,GINM1,GRM1,GTF2H5,IPCEF1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,MTRF1L,MYCT1,NOX3,NUP43,OPRM1,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,RGS17,RMND1,SAMD5,SASH1,SCAF8,SERAC1,SHPRH,SNX9,STXBP5,SUMO4,SYNE1,SYNJ2,SYTL3,TAB2,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,ULBP1,ULBP2,ULBP3,UST,UTRN,VIP,ZBTB2,ZC3H12D,ZDHHC14"
TCGA.AG.3909.01A	6	144832032	144844172	7	-0.198	NEUTRAL	NA	1	UTRN
TCGA.AG.A00C.01A	6	144832032	149699857	145	-0.2105	NEUTRAL	NA	12	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SAMD5,SASH1,SHPRH,STXBP5,TAB2,UST,UTRN"
TCGA.AA.A00F.01A	6	144843094	149833273	121	0.0174	NEUTRAL	NA	15	"ADGB,EPM2A,FBXO30,GRM1,PPIL4,RAB32,SAMD5,SASH1,SHPRH,STXBP5,SUMO4,TAB2,UST,UTRN,ZC3H12D"
TCGA.AA.A00D.01A	6	144843094	150016163	158	-0.1315	NEUTRAL	NA	18	"ADGB,EPM2A,FBXO30,GINM1,GRM1,KATNA1,LATS1,PPIL4,RAB32,SAMD5,SASH1,SHPRH,STXBP5,SUMO4,TAB2,UST,UTRN,ZC3H12D"
TCGA.AA.3680	6	144978503	149035055	1327	-0.0114	NEUTRAL	NA	10	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SAMD5,SASH1,SHPRH,STXBP5,UTRN"
TCGA.AA.A017.01A	6	145072894	145095364	5	-0.1748	NEUTRAL	NA	1	UTRN
TCGA.AA.3811	6	145157749	148288647	925	0.159	NEUTRAL	NA	9	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SAMD5,SHPRH,STXBP5,UTRN"
TCGA.AA.A017.01A	6	145167853	146121245	7	-0.1759	NEUTRAL	NA	3	"EPM2A,FBXO30,UTRN"
TCGA.AA.3556	6	145502929	170918030	9545	-0.0123	NEUTRAL	NA	116	Too-Many
TCGA.CK.5914.01A	6	145946745	146126179	8	-0.1051	NEUTRAL	NA	2	"EPM2A,FBXO30"
TCGA.AA.A01Q.01A	6	145956330	150211928	144	0.1064	NEUTRAL	NA	21	"ADGB,EPM2A,FBXO30,GINM1,GRM1,KATNA1,LATS1,LRP11,NUP43,PCMT1,PPIL4,RAB32,RAET1E,SAMD5,SASH1,SHPRH,STXBP5,SUMO4,TAB2,UST,ZC3H12D"
TCGA.AG.4009.01A	6	146207472	146754959	38	-0.1117	NEUTRAL	NA	2	"GRM1,SHPRH"
TCGA.AG.3909.01A	6	146207472	150016163	145	0.1565	NEUTRAL	NA	15	"ADGB,GINM1,GRM1,KATNA1,LATS1,PPIL4,RAB32,SAMD5,SASH1,SHPRH,STXBP5,SUMO4,TAB2,UST,ZC3H12D"
TCGA.A6.3808.01A	6	146254144	149855776	136	0.375	NEUTRAL	NA	12	"ADGB,GRM1,PPIL4,RAB32,SAMD5,SASH1,SHPRH,STXBP5,SUMO4,TAB2,UST,ZC3H12D"
TCGA.AA.A017.01A	6	146267342	152615046	303	-0.04	NEUTRAL	NA	35	"ADGB,AKAP12,ARMT1,CCDC170,ESR1,GINM1,GRM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,RMND1,SAMD5,SASH1,SHPRH,STXBP5,SUMO4,SYNE1,TAB2,ULBP1,ULBP2,ULBP3,UST,ZBTB2,ZC3H12D"
TCGA.AH.6644	6	146320527	169545131	8889	-0.374	NEUTRAL	NA	102	Too-Many
TCGA.DM.A28K	6	146579097	147164884	185	0.0071	NEUTRAL	NA	3	"ADGB,GRM1,RAB32"
TCGA.AA.A01C.01A	6	146719897	149394931	59	0.177	NEUTRAL	NA	7	"ADGB,GRM1,RAB32,SAMD5,SASH1,STXBP5,UST"
TCGA.AG.4008	6	146811750	156138454	3405	0.0705	NEUTRAL	NA	46	"ADGB,AKAP12,ARMT1,CCDC170,CLDN20,CNKSR3,ESR1,FBXO5,GINM1,IPCEF1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,MTRF1L,MYCT1,NOX3,NUP43,OPRM1,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,RGS17,RMND1,SAMD5,SASH1,SCAF8,STXBP5,SUMO4,SYNE1,TAB2,TFB1M,TIAM2,ULBP1,ULBP2,ULBP3,UST,VIP,ZBTB2,ZC3H12D"
TCGA.AH.6643	6	146823437	162582177	5831	0.27	NEUTRAL	NA	78	"ACAT2,ADGB,AGPAT4,AKAP12,ARID1B,ARMT1,C6orf99,CCDC170,CLDN20,CNKSR3,DYNLT1,ESR1,EZR,FBXO5,FNDC1,GINM1,GTF2H5,IGF2R,IPCEF1,IYD,KATNA1,LATS1,LPA,LRP11,MAP3K4,MAS1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,NUP43,OPRM1,PARK2,PCMT1,PLEKHG1,PLG,PNLDC1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,RGS17,RMND1,RSPH3,SAMD5,SASH1,SCAF8,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,STXBP5,SUMO4,SYNE1,SYNJ2,SYTL3,TAB2,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,ULBP1,ULBP2,ULBP3,UST,VIP,WTAP,ZBTB2,ZC3H12D,ZDHHC14"
TCGA.CK.5914.01A	6	147036434	147045274	5	-0.358	NEUTRAL	NA	1	ADGB
TCGA.CK.5914.01A	6	147122301	147527055	6	-0.2592	NEUTRAL	NA	2	"ADGB,STXBP5"
TCGA.AA.3848	6	147186354	170918030	9150	0.0036	NEUTRAL	NA	110	Too-Many
TCGA.AA.3941	6	147483240	148506611	396	-0.4232	NEUTRAL	NA	2	"SAMD5,STXBP5"
TCGA.AG.4009.01A	6	147556337	147674386	18	-0.1436	NEUTRAL	NA	1	STXBP5
TCGA.AG.4009.01A	6	147680213	147830065	7	-0.4365	NEUTRAL	NA	2	"SAMD5,STXBP5"
TCGA.DM.A28K	6	147684317	170918030	8986	-0.0236	NEUTRAL	NA	110	Too-Many
TCGA.AA.A029.01A	6	147684484	170892551	1155	-0.267	NEUTRAL	NA	110	Too-Many
TCGA.AA.3850	6	147738559	152117684	1723	0.22715	NEUTRAL	NA	29	"AKAP12,ARMT1,CCDC170,ESR1,GINM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RMND1,SAMD5,SASH1,SUMO4,TAB2,ULBP1,ULBP2,ULBP3,UST,ZBTB2,ZC3H12D"
TCGA.AG.4009.01A	6	147885461	150052707	76	0.0539	NEUTRAL	NA	11	"GINM1,KATNA1,LATS1,NUP43,PPIL4,SAMD5,SASH1,SUMO4,TAB2,UST,ZC3H12D"
TCGA.AA.A010.01A	6	147885461	150070812	90	0.3073	NEUTRAL	NA	11	"GINM1,KATNA1,LATS1,NUP43,PPIL4,SAMD5,SASH1,SUMO4,TAB2,UST,ZC3H12D"
TCGA.AA.A02H.01A	6	147885461	170892551	1157	-0.4167	NEUTRAL	NA	109	Too-Many
TCGA.A6.6780	6	147993053	170918030	8874	0.0056	NEUTRAL	NA	108	Too-Many
TCGA.AA.3812	6	148007143	148180665	54	-0.0667	NEUTRAL	NA	0	None
TCGA.AA.3812	6	148181433	170918030	8840	0.2627	NEUTRAL	NA	108	Too-Many
TCGA.AF.5654	6	148242513	170918030	8784	-0.006	NEUTRAL	NA	108	Too-Many
TCGA.AA.3844	6	148295950	150781638	971	0.0485	NEUTRAL	NA	20	"GINM1,IYD,KATNA1,LATS1,LRP11,NUP43,PCMT1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,SASH1,SUMO4,TAB2,ULBP1,ULBP2,ULBP3,UST,ZC3H12D"
TCGA.AA.3977	6	148295950	164888503	6326	0.0586	NEUTRAL	NA	76	"ACAT2,AGPAT4,AKAP12,ARID1B,ARMT1,C6orf99,CCDC170,CLDN20,CNKSR3,DYNLT1,ESR1,EZR,FBXO5,FNDC1,GINM1,GTF2H5,IGF2R,IPCEF1,IYD,KATNA1,LATS1,LPA,LRP11,MAP3K4,MAS1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,NUP43,OPRM1,PACRG,PARK2,PCMT1,PLEKHG1,PLG,PNLDC1,PPIL4,PPP1R14C,QKI,RAET1E,RAET1G,RAET1L,RGS17,RMND1,RSPH3,SASH1,SCAF8,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SUMO4,SYNE1,SYNJ2,SYTL3,TAB2,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,ULBP1,ULBP2,ULBP3,UST,VIP,WTAP,ZBTB2,ZC3H12D,ZDHHC14"
TCGA.DM.A28F	6	148436867	148549072	54	-0.4251	NEUTRAL	NA	0	None
TCGA.AA.3941	6	148508516	151884251	1278	-0.0676	NEUTRAL	NA	27	"AKAP12,ARMT1,CCDC170,GINM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RMND1,SASH1,SUMO4,TAB2,ULBP1,ULBP2,ULBP3,UST,ZBTB2,ZC3H12D"
TCGA.DM.A28F	6	148549834	170918030	8617	-0.0266	NEUTRAL	NA	108	Too-Many
TCGA.AA.3509.01A	6	148593402	149838437	43	-0.0817	NEUTRAL	NA	6	"PPIL4,SASH1,SUMO4,TAB2,UST,ZC3H12D"
TCGA.AZ.4684.01A	6	148711220	149838437	42	0.1175	NEUTRAL	NA	6	"PPIL4,SASH1,SUMO4,TAB2,UST,ZC3H12D"
TCGA.CK.5914.01A	6	148789600	148869393	16	-0.3377	NEUTRAL	NA	1	SASH1
TCGA.F4.6854	6	149008761	152873383	1466	0.0366	NEUTRAL	NA	28	"AKAP12,ARMT1,CCDC170,ESR1,GINM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RMND1,SUMO4,SYNE1,TAB2,ULBP1,ULBP2,ULBP3,UST,ZBTB2,ZC3H12D"
TCGA.CK.5914.01A	6	149068515	149854543	29	0.3551	NEUTRAL	NA	5	"PPIL4,SUMO4,TAB2,UST,ZC3H12D"
TCGA.AA.A01C.01A	6	149691082	151894282	168	-0.1976	NEUTRAL	NA	25	"AKAP12,ARMT1,CCDC170,GINM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RMND1,SUMO4,TAB2,ULBP1,ULBP2,ULBP3,ZBTB2,ZC3H12D"
TCGA.AG.A01N.01A	6	149699147	160575783	741	-0.0669	NEUTRAL	NA	65	"ACAT2,AKAP12,ARID1B,ARMT1,C6orf99,CCDC170,CLDN20,CNKSR3,DYNLT1,ESR1,EZR,FBXO5,FNDC1,GINM1,GTF2H5,IGF2R,IPCEF1,IYD,KATNA1,LATS1,LRP11,MAS1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,NUP43,OPRM1,PCMT1,PLEKHG1,PNLDC1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RGS17,RMND1,RSPH3,SCAF8,SERAC1,SLC22A1,SNX9,SOD2,SUMO4,SYNE1,SYNJ2,SYTL3,TAB2,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,ULBP1,ULBP2,ULBP3,VIP,WTAP,ZBTB2,ZC3H12D,ZDHHC14"
TCGA.AG.A00C.01A	6	149718693	150569848	91	0.1955	NEUTRAL	NA	17	"GINM1,KATNA1,LATS1,LRP11,NUP43,PCMT1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,SUMO4,TAB2,ULBP1,ULBP2,ULBP3,ZC3H12D"
TCGA.AG.3611.01A	6	149826540	149854543	7	0.3782	NEUTRAL	NA	1	PPIL4
TCGA.EI.6508	6	149835077	162137511	4501	0.0206	NEUTRAL	NA	69	"ACAT2,AGPAT4,AKAP12,ARID1B,ARMT1,C6orf99,CCDC170,CLDN20,CNKSR3,DYNLT1,ESR1,EZR,FBXO5,FNDC1,GINM1,GTF2H5,IGF2R,IPCEF1,IYD,KATNA1,LATS1,LPA,LRP11,MAP3K4,MAS1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,NUP43,OPRM1,PARK2,PCMT1,PLEKHG1,PLG,PNLDC1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RGS17,RMND1,RSPH3,SCAF8,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,ULBP1,ULBP2,ULBP3,VIP,WTAP,ZBTB2,ZDHHC14"
TCGA.AZ.4684.01A	6	149842159	151334849	128	-0.2582	NEUTRAL	NA	17	"GINM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,ULBP1,ULBP2,ULBP3"
TCGA.CK.5914.01A	6	149855776	150464282	80	-0.157	NEUTRAL	NA	14	"GINM1,KATNA1,LATS1,LRP11,NUP43,PCMT1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,ULBP1,ULBP2,ULBP3"
TCGA.AG.3611.01A	6	149855776	157256551	416	-0.1314	NEUTRAL	NA	38	"AKAP12,ARID1B,ARMT1,CCDC170,CLDN20,CNKSR3,ESR1,FBXO5,GINM1,IPCEF1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,MTRF1L,MYCT1,NOX3,NUP43,OPRM1,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RGS17,RMND1,SCAF8,SYNE1,TFB1M,TIAM2,ULBP1,ULBP2,ULBP3,VIP,ZBTB2"
TCGA.A6.3808.01A	6	149856690	152130210	164	-0.4489	NEUTRAL	NA	23	"AKAP12,ARMT1,CCDC170,ESR1,GINM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RMND1,ULBP1,ULBP2,ULBP3,ZBTB2"
TCGA.AG.4009.01A	6	150057559	150174097	18	-0.4773	NEUTRAL	NA	3	"LRP11,NUP43,PCMT1"
TCGA.AA.3509.01A	6	150123339	150387003	33	0.031	NEUTRAL	NA	8	"LRP11,PCMT1,RAET1E,RAET1G,RAET1L,ULBP1,ULBP2,ULBP3"
TCGA.AG.3906.01A	6	150123339	151757534	97	0.141	NEUTRAL	NA	15	"AKAP12,IYD,LRP11,MTHFD1L,PCMT1,PLEKHG1,PPP1R14C,RAET1E,RAET1G,RAET1L,RMND1,ULBP1,ULBP2,ULBP3,ZBTB2"
TCGA.AG.3909.01A	6	150141638	150211928	10	0.168	NEUTRAL	NA	2	"LRP11,RAET1E"
TCGA.AA.A00D.01A	6	150141638	151789461	97	0.0041	NEUTRAL	NA	15	"AKAP12,ARMT1,IYD,LRP11,MTHFD1L,PLEKHG1,PPP1R14C,RAET1E,RAET1G,RAET1L,RMND1,ULBP1,ULBP2,ULBP3,ZBTB2"
TCGA.AG.4009.01A	6	150209586	151151706	43	0.0763	NEUTRAL	NA	9	"IYD,PLEKHG1,PPP1R14C,RAET1E,RAET1G,RAET1L,ULBP1,ULBP2,ULBP3"
TCGA.DC.6157	6	150272531	150408095	54	-0.1314	NEUTRAL	NA	3	"RAET1L,ULBP1,ULBP3"
TCGA.AA.3509.01A	6	150390082	151334849	46	-0.4885	NEUTRAL	NA	5	"IYD,MTHFD1L,PLEKHG1,PPP1R14C,ULBP3"
TCGA.AA.A01Q.01A	6	150390082	153073262	230	0.1541	NEUTRAL	NA	14	"AKAP12,ARMT1,CCDC170,ESR1,IYD,MTHFD1L,MYCT1,PLEKHG1,PPP1R14C,RMND1,SYNE1,ULBP3,VIP,ZBTB2"
TCGA.DC.6157	6	150408110	170918030	7904	0.2515	NEUTRAL	NA	90	"ACAT2,AGPAT4,AKAP12,ARID1B,ARMT1,C6orf118,C6orf120,C6orf99,CCDC170,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,ESR1,EZR,FAM120B,FBXO5,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,IYD,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLEKHG1,PLG,PNLDC1,PPP1R14C,PRR18,PSMB1,QKI,RGS17,RMND1,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WDR27,WTAP,ZBTB2,ZDHHC14"
TCGA.AA.A00F.01A	6	150569848	151626833	47	0.1189	NEUTRAL	NA	5	"AKAP12,IYD,MTHFD1L,PLEKHG1,PPP1R14C"
TCGA.AG.A00C.01A	6	150690116	151160917	20	-0.1109	NEUTRAL	NA	2	"IYD,PLEKHG1"
TCGA.AA.3844	6	150783760	150855863	35	-0.2219	NEUTRAL	NA	0	None
TCGA.AA.3844	6	150856769	170918030	7756	-0.036	NEUTRAL	NA	88	"ACAT2,AGPAT4,AKAP12,ARID1B,ARMT1,C6orf118,C6orf120,C6orf99,CCDC170,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,ESR1,EZR,FAM120B,FBXO5,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLEKHG1,PLG,PNLDC1,PRR18,PSMB1,QKI,RGS17,RMND1,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WDR27,WTAP,ZBTB2,ZDHHC14"
TCGA.AY.A71X	6	150883348	170918030	7750	-0.0271	NEUTRAL	NA	88	"ACAT2,AGPAT4,AKAP12,ARID1B,ARMT1,C6orf118,C6orf120,C6orf99,CCDC170,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,ESR1,EZR,FAM120B,FBXO5,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLEKHG1,PLG,PNLDC1,PRR18,PSMB1,QKI,RGS17,RMND1,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WDR27,WTAP,ZBTB2,ZDHHC14"
TCGA.CK.5914.01A	6	151139269	151233721	14	-0.068	NEUTRAL	NA	2	"MTHFD1L,PLEKHG1"
TCGA.AA.A01K.01A	6	151142249	169634811	930	0.0075	NEUTRAL	NA	78	"ACAT2,AGPAT4,AKAP12,ARID1B,ARMT1,C6orf118,C6orf99,CCDC170,CCR6,CLDN20,CNKSR3,DACT2,DYNLT1,ESR1,EZR,FBXO5,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDE10A,PLEKHG1,PLG,PNLDC1,PRR18,QKI,RGS17,RMND1,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TCP1,TCP10,TCP10L2,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WTAP,ZBTB2,ZDHHC14"
TCGA.AG.4009.01A	6	151152281	151208929	7	-0.353	NEUTRAL	NA	2	"MTHFD1L,PLEKHG1"
TCGA.AG.3909.01A	6	151160917	151208929	6	-0.0467	NEUTRAL	NA	2	"MTHFD1L,PLEKHG1"
TCGA.AG.A00C.01A	6	151197168	151206730	4	0.3715	NEUTRAL	NA	1	MTHFD1L
TCGA.AG.A00C.01A	6	151208929	151646912	25	-0.1534	NEUTRAL	NA	2	"AKAP12,MTHFD1L"
TCGA.AG.4009.01A	6	151226738	151646912	24	0.1854	NEUTRAL	NA	2	"AKAP12,MTHFD1L"
TCGA.F4.6460	6	151250566	161538249	3684	0.1667	NEUTRAL	NA	51	"ACAT2,AKAP12,ARID1B,ARMT1,C6orf99,CCDC170,CLDN20,CNKSR3,DYNLT1,ESR1,EZR,FBXO5,FNDC1,GTF2H5,IGF2R,IPCEF1,LPA,MAP3K4,MAS1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,OPRM1,PLG,PNLDC1,RGS17,RMND1,RSPH3,SCAF8,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,VIP,WTAP,ZBTB2,ZDHHC14"
TCGA.AA.3509.01A	6	151335994	152734466	156	-0.0494	NEUTRAL	NA	8	"AKAP12,ARMT1,CCDC170,ESR1,MTHFD1L,RMND1,SYNE1,ZBTB2"
TCGA.AZ.4684.01A	6	151335994	152734466	156	0.0997	NEUTRAL	NA	8	"AKAP12,ARMT1,CCDC170,ESR1,MTHFD1L,RMND1,SYNE1,ZBTB2"
TCGA.AG.3909.01A	6	151413546	151789461	23	-0.0653	NEUTRAL	NA	5	"AKAP12,ARMT1,MTHFD1L,RMND1,ZBTB2"
TCGA.AG.4009.01A	6	151669809	151754241	13	-0.3751	NEUTRAL	NA	3	"AKAP12,RMND1,ZBTB2"
TCGA.CK.5914.01A	6	151669809	151789461	20	-0.1187	NEUTRAL	NA	4	"AKAP12,ARMT1,RMND1,ZBTB2"
TCGA.AG.A00C.01A	6	151669809	151859163	22	0.2808	NEUTRAL	NA	5	"AKAP12,ARMT1,CCDC170,RMND1,ZBTB2"
TCGA.EI.7002	6	151730783	154947407	1197	0.0205	NEUTRAL	NA	13	"ARMT1,CCDC170,CNKSR3,ESR1,FBXO5,IPCEF1,MTRF1L,MYCT1,OPRM1,RGS17,RMND1,SYNE1,VIP"
TCGA.AG.A00Y.01A	6	151754241	170892551	999	0.0644	NEUTRAL	NA	84	"ACAT2,AGPAT4,ARID1B,ARMT1,C6orf118,C6orf120,C6orf99,CCDC170,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,ESR1,EZR,FAM120B,FBXO5,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RGS17,RMND1,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WDR27,WTAP,ZDHHC14"
TCGA.AG.3906.01A	6	151789461	151869389	5	0.2733	NEUTRAL	NA	2	"ARMT1,CCDC170"
TCGA.G4.6299	6	151799923	170918030	7389	-0.0506	NEUTRAL	NA	82	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCDC170,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,ESR1,EZR,FAM120B,FBXO5,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RGS17,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WDR27,WTAP,ZDHHC14"
TCGA.G4.6322	6	151851123	170918030	7381	-0.005	NEUTRAL	NA	82	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCDC170,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,ESR1,EZR,FAM120B,FBXO5,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RGS17,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WDR27,WTAP,ZDHHC14"
TCGA.AG.4009.01A	6	151857425	159644509	458	-0.0232	NEUTRAL	NA	32	"ARID1B,C6orf99,CCDC170,CLDN20,CNKSR3,DYNLT1,ESR1,EZR,FBXO5,FNDC1,GTF2H5,IPCEF1,MTRF1L,MYCT1,NOX3,OPRM1,RGS17,RSPH3,SCAF8,SERAC1,SNX9,SYNE1,SYNJ2,SYTL3,TAGAP,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,VIP,ZDHHC14"
TCGA.AA.A00D.01A	6	151859163	153073262	160	-0.4717	NEUTRAL	NA	5	"CCDC170,ESR1,MYCT1,SYNE1,VIP"
TCGA.AG.A00C.01A	6	151865660	152605066	69	-0.2455	NEUTRAL	NA	3	"CCDC170,ESR1,SYNE1"
TCGA.AA.3941	6	151886950	152867067	375	-0.3378	NEUTRAL	NA	3	"CCDC170,ESR1,SYNE1"
TCGA.AG.3906.01A	6	151894282	168370414	857	-0.0952	NEUTRAL	NA	66	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf99,CCDC170,CCR6,CLDN20,CNKSR3,DYNLT1,ESR1,EZR,FBXO5,FGFR1OP,FNDC1,GPR31,GTF2H5,IGF2R,IPCEF1,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,RGS17,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TCP1,TCP10,TCP10L2,TFB1M,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WTAP,ZDHHC14"
TCGA.AA.A01C.01A	6	151906977	153078157	167	0.193	NEUTRAL	NA	5	"CCDC170,ESR1,MYCT1,SYNE1,VIP"
TCGA.AA.A00F.01A	6	151917438	152622956	65	-0.0413	NEUTRAL	NA	3	"CCDC170,ESR1,SYNE1"
TCGA.AA.3850	6	152121441	152382381	78	-0.29095	NEUTRAL	NA	1	ESR1
TCGA.AG.3592	6	152200508	153725047	605	-0.0253	NEUTRAL	NA	7	"ESR1,FBXO5,MTRF1L,MYCT1,RGS17,SYNE1,VIP"
TCGA.AA.3850	6	152384799	152744749	161	0.21355	NEUTRAL	NA	2	"ESR1,SYNE1"
TCGA.CK.5914.01A	6	152446344	152456192	5	-0.307	NEUTRAL	NA	1	SYNE1
TCGA.AA.A00L.01A	6	152457723	153073262	144	-0.3527	NEUTRAL	NA	3	"MYCT1,SYNE1,VIP"
TCGA.CK.5914.01A	6	152563324	152589153	8	-0.0082	NEUTRAL	NA	1	SYNE1
TCGA.AG.A00C.01A	6	152614672	152642336	12	0.1039	NEUTRAL	NA	1	SYNE1
TCGA.AA.A00N.01A	6	152614672	152642816	13	-0.4987	NEUTRAL	NA	1	SYNE1
TCGA.AG.3909.01A	6	152614672	152642816	13	-0.3619	NEUTRAL	NA	1	SYNE1
TCGA.CK.5914.01A	6	152614672	152647413	17	-0.4263	NEUTRAL	NA	1	SYNE1
TCGA.AG.3891.01A	6	152629584	155776809	206	-0.1836	NEUTRAL	NA	14	"CLDN20,CNKSR3,FBXO5,IPCEF1,MTRF1L,MYCT1,NOX3,OPRM1,RGS17,SCAF8,SYNE1,TFB1M,TIAM2,VIP"
TCGA.AA.A017.01A	6	152629584	169634811	804	-0.055	NEUTRAL	NA	70	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf99,CCR6,CLDN20,CNKSR3,DACT2,DYNLT1,EZR,FBXO5,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,MTRF1L,MYCT1,NOX3,OPRM1,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,RGS17,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,T,TAGAP,TCP1,TCP10,TCP10L2,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,VIP,WTAP,ZDHHC14"
TCGA.AG.A00C.01A	6	152642816	153078157	89	-0.277	NEUTRAL	NA	3	"MYCT1,SYNE1,VIP"
TCGA.AA.A00F.01A	6	152644641	153075250	85	-0.0214	NEUTRAL	NA	3	"MYCT1,SYNE1,VIP"
TCGA.AG.3909.01A	6	152644641	153078157	88	0.3743	NEUTRAL	NA	3	"MYCT1,SYNE1,VIP"
TCGA.CK.5914.01A	6	152650827	152690066	18	-0.023	NEUTRAL	NA	1	SYNE1
TCGA.AA.3850	6	152745132	154382366	624	-0.27925	NEUTRAL	NA	7	"FBXO5,MTRF1L,MYCT1,OPRM1,RGS17,SYNE1,VIP"
TCGA.CK.5914.01A	6	152751198	152770630	9	-0.0584	NEUTRAL	NA	1	SYNE1
TCGA.AA.3814	6	152768193	154935663	824	-0.0375	NEUTRAL	NA	9	"CNKSR3,FBXO5,IPCEF1,MTRF1L,MYCT1,OPRM1,RGS17,SYNE1,VIP"
TCGA.AG.A01W.01A	6	152861496	157633872	154	0.0683	NEUTRAL	NA	15	"ARID1B,CLDN20,CNKSR3,FBXO5,IPCEF1,MTRF1L,MYCT1,NOX3,OPRM1,RGS17,SCAF8,SYNE1,TFB1M,TIAM2,VIP"
TCGA.F4.6854	6	152873619	161582534	3087	0.3036	NEUTRAL	NA	45	"ACAT2,AGPAT4,ARID1B,C6orf99,CLDN20,CNKSR3,DYNLT1,EZR,FBXO5,FNDC1,GTF2H5,IGF2R,IPCEF1,LPA,MAP3K4,MAS1,MRPL18,MTRF1L,MYCT1,NOX3,OPRM1,PLG,PNLDC1,RGS17,RSPH3,SCAF8,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNE1,SYNJ2,SYTL3,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,VIP,WTAP,ZDHHC14"
TCGA.AA.A01Q.01A	6	153075250	153332677	15	-0.2586	NEUTRAL	NA	4	"FBXO5,MTRF1L,RGS17,VIP"
TCGA.AA.A00D.01A	6	153075250	160114123	266	-0.0866	NEUTRAL	NA	29	"ARID1B,C6orf99,CLDN20,CNKSR3,DYNLT1,EZR,FBXO5,FNDC1,GTF2H5,IPCEF1,MTRF1L,NOX3,OPRM1,RGS17,RSPH3,SCAF8,SERAC1,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,VIP,ZDHHC14"
TCGA.AA.A00L.01A	6	153075250	162475063	485	-0.0173	NEUTRAL	NA	44	"ACAT2,AGPAT4,ARID1B,C6orf99,CLDN20,CNKSR3,DYNLT1,EZR,FBXO5,FNDC1,GTF2H5,IGF2R,IPCEF1,LPA,MAP3K4,MAS1,MRPL18,MTRF1L,NOX3,OPRM1,PARK2,PLG,PNLDC1,RGS17,RSPH3,SCAF8,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,VIP,WTAP,ZDHHC14"
TCGA.AA.A01C.01A	6	153292256	160553215	401	-0.0998	NEUTRAL	NA	36	"ACAT2,ARID1B,C6orf99,CLDN20,CNKSR3,DYNLT1,EZR,FBXO5,FNDC1,GTF2H5,IGF2R,IPCEF1,MAS1,MRPL18,MTRF1L,NOX3,OPRM1,PNLDC1,RGS17,RSPH3,SCAF8,SERAC1,SLC22A1,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,WTAP,ZDHHC14"
TCGA.AG.3909.01A	6	153323565	155561647	68	0.3502	NEUTRAL	NA	7	"CNKSR3,IPCEF1,MTRF1L,OPRM1,RGS17,SCAF8,TIAM2"
TCGA.AG.A00C.01A	6	153323565	155561647	68	-0.12	NEUTRAL	NA	7	"CNKSR3,IPCEF1,MTRF1L,OPRM1,RGS17,SCAF8,TIAM2"
TCGA.AA.A01Q.01A	6	153345370	155504354	62	0.2587	NEUTRAL	NA	6	"CNKSR3,IPCEF1,OPRM1,RGS17,SCAF8,TIAM2"
TCGA.AA.A00F.01A	6	153364996	155561647	62	0.0318	NEUTRAL	NA	6	"CNKSR3,IPCEF1,OPRM1,RGS17,SCAF8,TIAM2"
TCGA.AA.3811	6	153391617	154275632	325	0.0938	NEUTRAL	NA	1	RGS17
TCGA.AZ.6600	6	153457679	170918030	6751	0.0512	NEUTRAL	NA	74	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.G4.6317	6	153565653	170918030	6702	0.002	NEUTRAL	NA	74	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AY.4070	6	153640498	170918030	6644	-0.2913	NEUTRAL	NA	74	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AG.3592	6	153726310	157406461	1341	0.3391	NEUTRAL	NA	9	"ARID1B,CLDN20,CNKSR3,IPCEF1,NOX3,OPRM1,SCAF8,TFB1M,TIAM2"
TCGA.AA.3982	6	154272363	154481393	80	-0.1355	NEUTRAL	NA	2	"IPCEF1,OPRM1"
TCGA.AA.3530	6	154272363	170918030	6445	0.1037	NEUTRAL	NA	74	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AA.3941	6	154341375	154468786	52	-0.2253	NEUTRAL	NA	1	OPRM1
TCGA.AA.3850	6	154389978	155809689	490	0.27215	NEUTRAL	NA	8	"CLDN20,CNKSR3,IPCEF1,NOX3,OPRM1,SCAF8,TFB1M,TIAM2"
TCGA.AZ.4684.01A	6	154429114	155123083	34	-0.1059	NEUTRAL	NA	4	"CNKSR3,IPCEF1,OPRM1,SCAF8"
TCGA.AA.3509.01A	6	154429114	156267871	95	-0.018	NEUTRAL	NA	8	"CLDN20,CNKSR3,IPCEF1,NOX3,OPRM1,SCAF8,TFB1M,TIAM2"
TCGA.AA.3941	6	154481393	155619022	361	-0.0184	NEUTRAL	NA	7	"CLDN20,CNKSR3,IPCEF1,OPRM1,SCAF8,TFB1M,TIAM2"
TCGA.AA.3982	6	154483145	155625103	363	0.2154	NEUTRAL	NA	7	"CLDN20,CNKSR3,IPCEF1,OPRM1,SCAF8,TFB1M,TIAM2"
TCGA.AA.3930.01A	6	154763170	157524952	89	0.1277	NEUTRAL	NA	7	"ARID1B,CLDN20,CNKSR3,NOX3,SCAF8,TFB1M,TIAM2"
TCGA.AA.3814	6	154938221	170918030	6214	0.3272	NEUTRAL	NA	71	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,CLDN20,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,NOX3,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AZ.4684.01A	6	155129167	157519895	79	0.2674	NEUTRAL	NA	6	"ARID1B,CLDN20,NOX3,SCAF8,TFB1M,TIAM2"
TCGA.EI.7002	6	155200673	170918030	6158	-0.0102	NEUTRAL	NA	70	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,CLDN20,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,NOX3,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.A6.3808.01A	6	155450338	160542941	350	-0.1131	NEUTRAL	NA	29	"ACAT2,ARID1B,C6orf99,CLDN20,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,MAS1,MRPL18,NOX3,PNLDC1,RSPH3,SERAC1,SLC22A1,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,WTAP,ZDHHC14"
TCGA.AA.A01Q.01A	6	155532291	155575505	12	-0.3877	NEUTRAL	NA	1	TIAM2
TCGA.CK.5914.01A	6	155532291	155635388	21	-0.3633	NEUTRAL	NA	3	"CLDN20,TFB1M,TIAM2"
TCGA.AA.A01Q.01A	6	155577581	158353169	63	0.2384	NEUTRAL	NA	8	"ARID1B,CLDN20,NOX3,SNX9,TFB1M,TIAM2,TMEM242,ZDHHC14"
TCGA.AG.A00C.01A	6	155596812	158534454	95	-0.2222	NEUTRAL	NA	9	"ARID1B,CLDN20,NOX3,SERAC1,SNX9,SYNJ2,TFB1M,TMEM242,ZDHHC14"
TCGA.AA.A00F.01A	6	155596812	158567777	100	0.0903	NEUTRAL	NA	9	"ARID1B,CLDN20,NOX3,SERAC1,SNX9,SYNJ2,TFB1M,TMEM242,ZDHHC14"
TCGA.AA.3982	6	155632843	156766473	479	-0.0859	NEUTRAL	NA	2	"NOX3,TFB1M"
TCGA.AA.3850	6	155813341	156754605	395	-0.21225	NEUTRAL	NA	0	None
TCGA.AG.4008	6	156140442	159426738	1089	0.074	NEUTRAL	NA	14	"ARID1B,C6orf99,DYNLT1,EZR,GTF2H5,RSPH3,SERAC1,SNX9,SYNJ2,SYTL3,TMEM181,TMEM242,TULP4,ZDHHC14"
TCGA.AG.3901	6	156140847	157383273	503	-0.0227	NEUTRAL	NA	1	ARID1B
TCGA.AG.3898	6	156141196	161769834	1996	0.0375	NEUTRAL	NA	32	"ACAT2,AGPAT4,ARID1B,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PARK2,PLG,PNLDC1,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TMEM242,TULP4,WTAP,ZDHHC14"
TCGA.AG.3891.01A	6	156267871	157521898	19	-0.4628	NEUTRAL	NA	1	ARID1B
TCGA.CM.6170	6	156479974	156519130	26	-0.3127	NEUTRAL	NA	0	None
TCGA.A6.6142	6	156492896	156527066	22	-0.3157	NEUTRAL	NA	0	None
TCGA.CM.6170	6	156520100	165224133	3297	0.0764	NEUTRAL	NA	34	"ACAT2,AGPAT4,ARID1B,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PACRG,PARK2,PLG,PNLDC1,QKI,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TMEM242,TULP4,WTAP,ZDHHC14"
TCGA.A6.6653	6	156526977	170918030	5628	-0.0212	NEUTRAL	NA	66	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.A6.6142	6	156529447	170918030	5626	0.1187	NEUTRAL	NA	66	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AA.3941	6	156550399	162738704	2257	-0.1453	NEUTRAL	NA	32	"ACAT2,AGPAT4,ARID1B,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PARK2,PLG,PNLDC1,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TMEM242,TULP4,WTAP,ZDHHC14"
TCGA.AA.3850	6	156761337	162738568	2172	0.26235	NEUTRAL	NA	32	"ACAT2,AGPAT4,ARID1B,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PARK2,PLG,PNLDC1,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TMEM242,TULP4,WTAP,ZDHHC14"
TCGA.AA.3982	6	156768305	157927859	306	0.2334	NEUTRAL	NA	3	"ARID1B,TMEM242,ZDHHC14"
TCGA.A6.6137	6	156873974	157166441	89	-0.3816	NEUTRAL	NA	1	ARID1B
TCGA.F4.6461	6	157048636	158070060	254	-0.5013	NEUTRAL	NA	3	"ARID1B,TMEM242,ZDHHC14"
TCGA.A6.6137	6	157177311	157284909	44	-0.0027	NEUTRAL	NA	1	ARID1B
TCGA.NH.A8F7	6	157239201	170918030	5355	-0.0249	NEUTRAL	NA	66	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.A6.6137	6	157285154	158610910	380	-0.3537	NEUTRAL	NA	7	"ARID1B,GTF2H5,SERAC1,SNX9,SYNJ2,TMEM242,ZDHHC14"
TCGA.AG.3901	6	157384929	158672383	357	-0.4117	NEUTRAL	NA	7	"ARID1B,GTF2H5,SERAC1,SNX9,SYNJ2,TMEM242,ZDHHC14"
TCGA.AG.3611.01A	6	157405787	157527899	17	-0.4688	NEUTRAL	NA	1	ARID1B
TCGA.AG.3592	6	157408682	162424578	1819	-0.0238	NEUTRAL	NA	32	"ACAT2,AGPAT4,ARID1B,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PARK2,PLG,PNLDC1,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TMEM242,TULP4,WTAP,ZDHHC14"
TCGA.CK.5915	6	157491122	170918030	5273	-0.281	NEUTRAL	NA	66	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AZ.4684.01A	6	157521898	165756833	439	0.0173	NEUTRAL	NA	36	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PACRG,PARK2,PDE10A,PLG,PNLDC1,QKI,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TMEM242,TULP4,WTAP,ZDHHC14"
TCGA.AA.A00N.01A	6	157524952	158735037	76	0.2428	NEUTRAL	NA	8	"ARID1B,GTF2H5,SERAC1,SNX9,SYNJ2,TMEM242,TULP4,ZDHHC14"
TCGA.AG.3891.01A	6	157524952	168289878	539	-0.155	NEUTRAL	NA	50	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf99,CCR6,DYNLT1,EZR,FGFR1OP,FNDC1,GPR31,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TCP1,TCP10,TCP10L2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WTAP,ZDHHC14"
TCGA.AA.3930.01A	6	157713935	169628175	631	0.1563	NEUTRAL	NA	55	"ACAT2,AGPAT4,C6orf118,C6orf99,CCR6,DACT2,DYNLT1,EZR,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TCP1,TCP10,TCP10L2,THBS2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WTAP,ZDHHC14"
TCGA.AG.A01W.01A	6	157722992	158013763	9	-0.2097	NEUTRAL	NA	2	"TMEM242,ZDHHC14"
TCGA.AA.3872	6	157751113	164888503	2847	0.1697	NEUTRAL	NA	32	"ACAT2,AGPAT4,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PACRG,PARK2,PLG,PNLDC1,QKI,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TULP4,WTAP,ZDHHC14"
TCGA.A6.5661	6	157775270	170918030	5257	-0.352	NEUTRAL	NA	64	"ACAT2,AGPAT4,C6orf118,C6orf120,C6orf99,CCR6,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TMEM181,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AG.3611.01A	6	157803017	160327937	184	-0.1872	NEUTRAL	NA	20	"ACAT2,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,MRPL18,PNLDC1,RSPH3,SERAC1,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TULP4,WTAP,ZDHHC14"
TCGA.AA.3692	6	157919151	163162059	2034	-0.2263	NEUTRAL	NA	31	"ACAT2,AGPAT4,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PACRG,PARK2,PLG,PNLDC1,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TULP4,WTAP,ZDHHC14"
TCGA.DM.A1HB	6	157980800	163713966	2184	0.0104	NEUTRAL	NA	31	"ACAT2,AGPAT4,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PACRG,PARK2,PLG,PNLDC1,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TULP4,WTAP,ZDHHC14"
TCGA.F4.6461	6	158070191	170918030	5157	0	NEUTRAL	NA	64	"ACAT2,AGPAT4,C6orf118,C6orf120,C6orf99,CCR6,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TMEM181,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AG.A01W.01A	6	158208514	158283789	16	0.2846	NEUTRAL	NA	1	SNX9
TCGA.AA.3982	6	158216858	158301422	27	0.1736	NEUTRAL	NA	1	SNX9
TCGA.AG.3909.01A	6	158288526	158454468	20	0.2954	NEUTRAL	NA	2	"SNX9,SYNJ2"
TCGA.AA.3982	6	158311784	162466058	1606	0.1682	NEUTRAL	NA	29	"ACAT2,AGPAT4,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PARK2,PLG,PNLDC1,RSPH3,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TULP4,WTAP"
TCGA.AG.A023.01A	6	158327106	160553215	251	-0.2886	NEUTRAL	NA	22	"ACAT2,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,IGF2R,MAS1,MRPL18,PNLDC1,RSPH3,SERAC1,SLC22A1,SNX9,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TULP4,WTAP"
TCGA.AA.A01Q.01A	6	158356948	158504424	23	-0.3339	NEUTRAL	NA	2	"SNX9,SYNJ2"
TCGA.AG.A01W.01A	6	158358181	158427826	20	-0.2613	NEUTRAL	NA	2	"SNX9,SYNJ2"
TCGA.AG.A01W.01A	6	158429629	160370521	187	0.2037	NEUTRAL	NA	19	"ACAT2,C6orf99,DYNLT1,EZR,FNDC1,GTF2H5,MAS1,MRPL18,PNLDC1,RSPH3,SERAC1,SOD2,SYNJ2,SYTL3,TAGAP,TCP1,TMEM181,TULP4,WTAP"
TCGA.AA.A01Q.01A	6	158504995	158902099	32	0.3346	NEUTRAL	NA	4	"GTF2H5,SERAC1,SYNJ2,TULP4"
TCGA.AG.3909.01A	6	158507837	158576267	20	0.1256	NEUTRAL	NA	2	"SERAC1,SYNJ2"
TCGA.AG.A00C.01A	6	158535690	158735037	17	0.1661	NEUTRAL	NA	3	"GTF2H5,SERAC1,TULP4"
TCGA.AA.A010.01A	6	158564037	158735037	10	-0.1811	NEUTRAL	NA	3	"GTF2H5,SERAC1,TULP4"
TCGA.A6.6137	6	158622124	159691621	373	0.0229	NEUTRAL	NA	9	"C6orf99,DYNLT1,EZR,FNDC1,RSPH3,SYTL3,TAGAP,TMEM181,TULP4"
TCGA.AG.3901	6	158672904	170918030	4948	-0.0631	NEUTRAL	NA	59	"ACAT2,AGPAT4,C6orf118,C6orf120,C6orf99,CCR6,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SOD2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TMEM181,TTLL2,TULP4,UNC93A,WDR27,WTAP"
TCGA.AA.A00F.01A	6	158834045	158902099	7	-0.0885	NEUTRAL	NA	1	TULP4
TCGA.AG.A00C.01A	6	158834045	158902099	7	-0.3399	NEUTRAL	NA	1	TULP4
TCGA.AA.A02E.01A	6	158882558	160551086	193	-0.1067	NEUTRAL	NA	18	"ACAT2,C6orf99,DYNLT1,EZR,FNDC1,IGF2R,MAS1,MRPL18,PNLDC1,RSPH3,SLC22A1,SOD2,SYTL3,TAGAP,TCP1,TMEM181,TULP4,WTAP"
TCGA.CK.5914.01A	6	158910568	159134794	33	-0.4241	NEUTRAL	NA	4	"DYNLT1,SYTL3,TMEM181,TULP4"
TCGA.AG.A00C.01A	6	158910568	159146518	31	0.2898	NEUTRAL	NA	4	"DYNLT1,SYTL3,TMEM181,TULP4"
TCGA.AA.A01Q.01A	6	158910568	159210263	40	-0.1409	NEUTRAL	NA	5	"DYNLT1,EZR,SYTL3,TMEM181,TULP4"
TCGA.AA.A010.01A	6	158927570	159026258	8	-0.3933	NEUTRAL	NA	2	"TMEM181,TULP4"
TCGA.AG.3909.01A	6	158927570	159029675	11	-0.1186	NEUTRAL	NA	2	"TMEM181,TULP4"
TCGA.AG.3909.01A	6	159086376	159642589	47	0.0991	NEUTRAL	NA	6	"C6orf99,EZR,FNDC1,RSPH3,SYTL3,TAGAP"
TCGA.AA.A00N.01A	6	159139072	159635936	46	0.3154	NEUTRAL	NA	6	"C6orf99,EZR,FNDC1,RSPH3,SYTL3,TAGAP"
TCGA.CK.5914.01A	6	159139072	159670024	58	0.1172	NEUTRAL	NA	6	"C6orf99,EZR,FNDC1,RSPH3,SYTL3,TAGAP"
TCGA.AG.A00C.01A	6	159166503	159618425	38	-0.1938	NEUTRAL	NA	6	"C6orf99,EZR,FNDC1,RSPH3,SYTL3,TAGAP"
TCGA.AA.A00F.01A	6	159172913	159464950	37	0.1578	NEUTRAL	NA	5	"C6orf99,EZR,RSPH3,SYTL3,TAGAP"
TCGA.AA.A02K.01A	6	159178194	159197390	12	-0.3213	NEUTRAL	NA	2	"EZR,SYTL3"
TCGA.AG.A015.01A	6	159197399	160236972	93	0.2182	NEUTRAL	NA	11	"ACAT2,C6orf99,EZR,FNDC1,MRPL18,PNLDC1,RSPH3,SOD2,TAGAP,TCP1,WTAP"
TCGA.AA.A02K.01A	6	159204524	168467987	469	0.0414	NEUTRAL	NA	42	"ACAT2,AGPAT4,C6orf118,C6orf99,CCR6,EZR,FGFR1OP,FNDC1,FRMD1,GPR31,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,RNASET2,RPS6KA2,RSPH3,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SOD2,T,TAGAP,TCP1,TCP10,TCP10L2,TTLL2,UNC93A,WTAP"
TCGA.AA.A01Q.01A	6	159239023	159652864	20	0.3254	NEUTRAL	NA	5	"C6orf99,EZR,FNDC1,RSPH3,TAGAP"
TCGA.AG.4008	6	159432565	160456162	401	-0.453	NEUTRAL	NA	10	"ACAT2,FNDC1,IGF2R,MAS1,MRPL18,PNLDC1,SOD2,TAGAP,TCP1,WTAP"
TCGA.AA.3870	6	159538493	170918030	4683	0.0282	NEUTRAL	NA	51	"ACAT2,AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SOD2,T,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27,WTAP"
TCGA.AA.A010.01A	6	159618425	159692309	23	-0.2212	NEUTRAL	NA	1	FNDC1
TCGA.AG.A00C.01A	6	159620971	159657225	11	0.2333	NEUTRAL	NA	1	FNDC1
TCGA.AG.A00C.01A	6	159659568	160103478	12	-0.1155	NEUTRAL	NA	2	"FNDC1,SOD2"
TCGA.AG.3909.01A	6	159660527	159692309	10	0.2506	NEUTRAL	NA	1	FNDC1
TCGA.AG.4009.01A	6	159660527	159692309	10	-0.1784	NEUTRAL	NA	1	FNDC1
TCGA.AA.A00N.01A	6	159672325	159692309	7	0.2666	NEUTRAL	NA	1	FNDC1
TCGA.A6.6137	6	159691656	160154098	198	-0.3377	NEUTRAL	NA	3	"FNDC1,SOD2,WTAP"
TCGA.CK.5914.01A	6	160103478	160183049	13	-0.3661	NEUTRAL	NA	3	"ACAT2,SOD2,WTAP"
TCGA.AG.A011.01A	6	160103478	160200628	21	-0.0164	NEUTRAL	NA	4	"ACAT2,SOD2,TCP1,WTAP"
TCGA.AA.A01Q.01A	6	160103478	160212015	34	-0.2065	NEUTRAL	NA	5	"ACAT2,MRPL18,SOD2,TCP1,WTAP"
TCGA.AA.A00D.01A	6	160157214	160237521	43	0.3137	NEUTRAL	NA	5	"ACAT2,MRPL18,PNLDC1,TCP1,WTAP"
TCGA.A6.6137	6	160157903	160219639	20	0.0649	NEUTRAL	NA	4	"ACAT2,MRPL18,TCP1,WTAP"
TCGA.AA.A00Q.01A	6	160183049	160921765	123	-0.0486	NEUTRAL	NA	9	"ACAT2,IGF2R,MAS1,MRPL18,PNLDC1,SLC22A1,SLC22A2,SLC22A3,TCP1"
TCGA.AF.3914.01A	6	160199153	169067008	401	-0.1278	NEUTRAL	NA	37	"ACAT2,AGPAT4,C6orf118,CCR6,DACT2,FGFR1OP,FRMD1,GPR31,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,RNASET2,RPS6KA2,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,T,TCP1,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.AG.4009.01A	6	160200628	161537796	181	0.0103	NEUTRAL	NA	11	"IGF2R,LPA,MAP3K4,MAS1,MRPL18,PLG,PNLDC1,SLC22A1,SLC22A2,SLC22A3,TCP1"
TCGA.AG.A011.01A	6	160201427	170892551	487	-0.2814	NEUTRAL	NA	47	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,T,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.A010.01A	6	160204944	166720695	258	0.183	NEUTRAL	NA	19	"AGPAT4,C6orf118,IGF2R,LPA,MAP3K4,MAS1,MRPL18,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,SLC22A1,SLC22A2,SLC22A3,T,TCP1"
TCGA.A6.6137	6	160219654	160345108	26	-0.3036	NEUTRAL	NA	2	"MAS1,PNLDC1"
TCGA.AG.A00C.01A	6	160234562	166571756	229	-0.1583	NEUTRAL	NA	16	"AGPAT4,C6orf118,IGF2R,LPA,MAP3K4,MAS1,PACRG,PARK2,PDE10A,PLG,PNLDC1,QKI,SLC22A1,SLC22A2,SLC22A3,T"
TCGA.AA.A00D.01A	6	160238082	166720695	225	-0.0877	NEUTRAL	NA	17	"AGPAT4,C6orf118,IGF2R,LPA,MAP3K4,MAS1,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,SLC22A1,SLC22A2,SLC22A3,T"
TCGA.CK.5914.01A	6	160239570	160445552	9	-0.1884	NEUTRAL	NA	3	"IGF2R,MAS1,PNLDC1"
TCGA.AA.A01Q.01A	6	160239570	168430220	323	-0.0297	NEUTRAL	NA	31	"AGPAT4,C6orf118,CCR6,FGFR1OP,GPR31,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,RNASET2,RPS6KA2,SFT2D1,SLC22A1,SLC22A2,SLC22A3,T,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.AG.A015.01A	6	160239570	170892551	457	0.2716	NEUTRAL	NA	45	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.A00F.01A	6	160239977	166720695	222	0.1338	NEUTRAL	NA	17	"AGPAT4,C6orf118,IGF2R,LPA,MAP3K4,MAS1,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,SLC22A1,SLC22A2,SLC22A3,T"
TCGA.A6.6137	6	160347110	161330720	349	0.0128	NEUTRAL	NA	6	"IGF2R,LPA,PLG,SLC22A1,SLC22A2,SLC22A3"
TCGA.AG.A01W.01A	6	160373576	160873526	77	-0.1448	NEUTRAL	NA	4	"IGF2R,SLC22A1,SLC22A2,SLC22A3"
TCGA.AG.3611.01A	6	160453546	160576970	50	-0.2769	NEUTRAL	NA	2	"IGF2R,SLC22A1"
TCGA.AG.4008	6	160459204	170918030	4291	-0.0317	NEUTRAL	NA	43	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CK.5914.01A	6	160490859	160557205	23	-0.319	NEUTRAL	NA	2	"IGF2R,SLC22A1"
TCGA.AG.3909.01A	6	160494762	160564535	22	-0.307	NEUTRAL	NA	2	"IGF2R,SLC22A1"
TCGA.AA.A00N.01A	6	160494762	160966432	57	-0.0257	NEUTRAL	NA	5	"IGF2R,LPA,SLC22A1,SLC22A2,SLC22A3"
TCGA.AG.A023.01A	6	160554941	161508733	84	0.3577	NEUTRAL	NA	6	"LPA,MAP3K4,PLG,SLC22A1,SLC22A2,SLC22A3"
TCGA.AG.3909.01A	6	160575783	166571756	166	0.2312	NEUTRAL	NA	13	"AGPAT4,C6orf118,LPA,MAP3K4,PACRG,PARK2,PDE10A,PLG,QKI,SLC22A1,SLC22A2,SLC22A3,T"
TCGA.AG.3611.01A	6	160579515	160645700	3	0.1178	NEUTRAL	NA	2	"SLC22A1,SLC22A2"
TCGA.AG.3611.01A	6	160662476	169067008	291	-0.2759	NEUTRAL	NA	30	"AGPAT4,C6orf118,CCR6,DACT2,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,LPA,MAP3K4,MLLT4,MPC1,PACRG,PARK2,PDE10A,PLG,PRR18,QKI,RNASET2,RPS6KA2,SFT2D1,SLC22A2,SLC22A3,SMOC2,T,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.AG.A01W.01A	6	160878846	160946018	20	0.3519	NEUTRAL	NA	0	None
TCGA.CK.4948.01B	6	160969508	161016378	11	0.3398	NEUTRAL	NA	1	LPA
TCGA.CK.4948.01B	6	161020485	170892551	405	-0.1686	NEUTRAL	NA	39	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,LPA,MAP3K4,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.A00Q.01A	6	161026027	170892551	339	0.0478	NEUTRAL	NA	39	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,LPA,MAP3K4,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.A01W.01A	6	161047382	166834295	143	0.2353	NEUTRAL	NA	14	"AGPAT4,C6orf118,LPA,MAP3K4,MPC1,PACRG,PARK2,PDE10A,PLG,PRR18,QKI,RPS6KA2,SFT2D1,T"
TCGA.A6.6137	6	161333780	161592273	116	-0.315	NEUTRAL	NA	2	"AGPAT4,MAP3K4"
TCGA.CK.5914.01A	6	161501862	161966386	35	0.0682	NEUTRAL	NA	3	"AGPAT4,MAP3K4,PARK2"
TCGA.AG.A023.01A	6	161510324	170892551	314	-0.2492	NEUTRAL	NA	37	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MAP3K4,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.A01C.01A	6	161512379	165752736	63	0.0635	NEUTRAL	NA	7	"AGPAT4,C6orf118,MAP3K4,PACRG,PARK2,PDE10A,QKI"
TCGA.AG.A01N.01A	6	161518064	170892551	320	-0.1081	NEUTRAL	NA	37	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MAP3K4,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F4.6460	6	161550205	162090980	272	-0.2699	NEUTRAL	NA	2	"AGPAT4,PARK2"
TCGA.AG.4009.01A	6	161557530	161966386	13	0.3001	NEUTRAL	NA	2	"AGPAT4,PARK2"
TCGA.AA.A02E.01A	6	161557530	170893340	303	-0.5119	NEUTRAL	NA	36	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F4.6854	6	161586839	164104975	1065	0.0006	NEUTRAL	NA	4	"AGPAT4,PACRG,PARK2,QKI"
TCGA.A6.6137	6	161599405	170918030	3893	0.0065	NEUTRAL	NA	36	"AGPAT4,C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.A01T	6	161744471	162284143	281	-0.2966	NEUTRAL	NA	1	PARK2
TCGA.AZ.6598	6	161772738	161860635	26	-0.4185	NEUTRAL	NA	1	PARK2
TCGA.AG.3898	6	161772738	162059081	144	-0.3892	NEUTRAL	NA	1	PARK2
TCGA.AZ.6598	6	161863074	162028279	105	-0.0617	NEUTRAL	NA	1	PARK2
TCGA.AG.4009.01A	6	161969834	168370414	169	-0.0866	NEUTRAL	NA	19	"C6orf118,CCR6,FGFR1OP,GPR31,MLLT4,MPC1,PACRG,PARK2,PDE10A,PRR18,QKI,RNASET2,RPS6KA2,SFT2D1,T,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.A6.5656	6	162018135	162575513	268	0.007	NEUTRAL	NA	1	PARK2
TCGA.AG.3898	6	162064227	170918030	3659	-0.036	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AZ.6598	6	162071634	162582177	247	-0.0495	NEUTRAL	NA	1	PARK2
TCGA.F4.6460	6	162092451	162489742	191	0.0935	NEUTRAL	NA	1	PARK2
TCGA.D5.6929	6	162136158	162288717	84	-0.0937	NEUTRAL	NA	1	PARK2
TCGA.A6.3807	6	162136158	162545871	187	-0.3962	NEUTRAL	NA	1	PARK2
TCGA.EI.6508	6	162152718	162881461	326	-0.0312	NEUTRAL	NA	1	PARK2
TCGA.AD.6965	6	162165361	170918030	3603	0.0045	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AZ.6603	6	162168505	162611891	202	-0.4184	NEUTRAL	NA	1	PARK2
TCGA.F5.6812	6	162209897	162595656	172	-0.4426	NEUTRAL	NA	1	PARK2
TCGA.NH.A50T	6	162210378	162672820	203	-0.3629	NEUTRAL	NA	1	PARK2
TCGA.AA.3955	6	162230919	162648913	188	-0.0907	NEUTRAL	NA	1	PARK2
TCGA.AA.3858	6	162270069	170918030	3558	-0.0806	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.A01T	6	162284205	162757004	196	-0.0525	NEUTRAL	NA	1	PARK2
TCGA.G4.6626	6	162289827	162346281	26	-0.0234	NEUTRAL	NA	1	PARK2
TCGA.D5.6929	6	162289827	162573341	112	-0.3978	NEUTRAL	NA	1	PARK2
TCGA.DC.6682	6	162298350	162335973	16	-0.3647	NEUTRAL	NA	1	PARK2
TCGA.T9.A92H	6	162307272	162428288	41	-0.3352	NEUTRAL	NA	1	PARK2
TCGA.DC.6155	6	162344711	162481459	57	-0.4044	NEUTRAL	NA	1	PARK2
TCGA.DM.A1D0	6	162359334	163183562	320	-0.0068	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.D5.6932	6	162382238	162545871	68	-0.5048	NEUTRAL	NA	1	PARK2
TCGA.CA.6715	6	162405704	162440757	15	-0.1187	NEUTRAL	NA	1	PARK2
TCGA.DM.A1HA	6	162405704	162842476	189	-0.0447	NEUTRAL	NA	1	PARK2
TCGA.F5.6464	6	162428288	162685582	114	-0.3848	NEUTRAL	NA	1	PARK2
TCGA.G4.6310	6	162429999	162833214	173	-0.3007	NEUTRAL	NA	1	PARK2
TCGA.DY.A1DG	6	162489532	162611891	53	-0.4344	NEUTRAL	NA	1	PARK2
TCGA.DM.A1DB	6	162489742	162664256	72	-0.0169	NEUTRAL	NA	1	PARK2
TCGA.F4.6460	6	162496787	162633117	58	-0.3439	NEUTRAL	NA	1	PARK2
TCGA.CA.6715	6	162507689	170918030	3440	-0.03	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AZ.4308	6	162510973	162603317	42	0.051	NEUTRAL	NA	1	PARK2
TCGA.A6.2675	6	162513966	162908588	167	-0.3423	NEUTRAL	NA	1	PARK2
TCGA.D5.7000	6	162542083	170918030	3422	-0.0462	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AZ.5403	6	162546217	162785077	95	-0.3268	NEUTRAL	NA	1	PARK2
TCGA.AA.3688	6	162569200	162625549	31	-0.0491	NEUTRAL	NA	1	PARK2
TCGA.D5.6929	6	162573420	162643776	33	0.0086	NEUTRAL	NA	1	PARK2
TCGA.AD.6963	6	162575220	170918030	3422	0.0198	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.3728	6	162578791	162603317	11	-0.1569	NEUTRAL	NA	1	PARK2
TCGA.AH.6643	6	162582611	162617011	18	-0.2029	NEUTRAL	NA	1	PARK2
TCGA.F5.6812	6	162597951	162958850	159	-0.0125	NEUTRAL	NA	1	PARK2
TCGA.CM.5862	6	162597951	170918030	3406	0.1502	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AZ.6598	6	162612118	162690884	30	0.0967	NEUTRAL	NA	1	PARK2
TCGA.DC.6155	6	162617011	162770008	57	-0.481	NEUTRAL	NA	1	PARK2
TCGA.T9.A92H	6	162617011	162838683	89	-0.4425	NEUTRAL	NA	1	PARK2
TCGA.AY.A8YK	6	162619985	162757004	55	-0.4151	NEUTRAL	NA	1	PARK2
TCGA.G4.6626	6	162625549	162702831	27	0.0773	NEUTRAL	NA	1	PARK2
TCGA.AA.3529	6	162643426	170918030	3393	0.001	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3979	6	162643426	170918030	3382	-0.0753	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.D5.6932	6	162643426	170918030	3387	0.0481	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.D5.6929	6	162646457	162664363	11	-0.4004	NEUTRAL	NA	1	PARK2
TCGA.AH.6643	6	162647243	163214109	204	-0.3971	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AA.3955	6	162650976	170918030	3382	0.3117	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.D5.6533	6	162660065	170918030	3374	0.1126	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AZ.6603	6	162660988	163051202	173	-0.4202	NEUTRAL	NA	1	PARK2
TCGA.AY.A69D	6	162672820	162740105	28	-0.0447	NEUTRAL	NA	1	PARK2
TCGA.D5.6929	6	162672820	170918030	3375	0.2237	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.NH.A50T	6	162672884	170918030	3354	-0.0676	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6464	6	162689004	170918030	3375	-0.0508	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3989	6	162702831	162877215	82	-0.3366	NEUTRAL	NA	1	PARK2
TCGA.A6.5656	6	162702831	170918030	3354	-0.0167	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.EI.6883	6	162709947	162856803	68	-0.0507	NEUTRAL	NA	1	PARK2
TCGA.NH.A6GB	6	162726826	170918030	3367	-0.0812	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3941	6	162740105	166007286	1364	-0.4165	NEUTRAL	NA	5	"C6orf118,PACRG,PARK2,PDE10A,QKI"
TCGA.AY.A69D	6	162746265	162901209	70	-0.3614	NEUTRAL	NA	1	PARK2
TCGA.AA.3850	6	162746265	163117931	150	0.18895	NEUTRAL	NA	1	PARK2
TCGA.AF.4110	6	162757004	163172808	154	-0.2979	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AY.A8YK	6	162770008	163009017	110	-0.1646	NEUTRAL	NA	1	PARK2
TCGA.A6.3807	6	162770008	163172808	153	-0.4193	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AG.3728	6	162785077	162864316	42	-0.012	NEUTRAL	NA	1	PARK2
TCGA.AZ.5403	6	162789299	170918030	3330	-0.0192	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AZ.6598	6	162789299	170918030	3340	-0.0682	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6863	6	162799116	170918030	3325	-0.0496	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DC.6155	6	162809008	170918030	3301	-0.0775	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.G4.6626	6	162825101	163117931	115	-0.4519	NEUTRAL	NA	1	PARK2
TCGA.AG.A026	6	162827463	170918030	3317	-0.0981	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.G4.6310	6	162837521	170918030	3314	0.0116	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.T9.A92H	6	162840921	163012610	78	-0.1868	NEUTRAL	NA	1	PARK2
TCGA.AA.3818	6	162848928	170918030	3311	-0.0357	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.A6.6652	6	162850142	170918030	3307	-0.0148	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F4.6460	6	162851540	162921181	35	-0.1581	NEUTRAL	NA	1	PARK2
TCGA.5M.AATE	6	162851553	170918030	3306	-0.0629	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.3728	6	162864838	162906761	17	-0.5054	NEUTRAL	NA	1	PARK2
TCGA.DM.A1DB	6	162875333	170918030	3297	-0.0156	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CI.6624	6	162875705	163092866	88	-0.4157	NEUTRAL	NA	1	PARK2
TCGA.A6.6650	6	162877215	170918030	3048	0.2401	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3989	6	162880493	170918030	3288	0.0393	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6864	6	162899570	164945510	869	-0.0125	NEUTRAL	NA	3	"PACRG,PARK2,QKI"
TCGA.AY.6197	6	162903180	170918030	3211	-0.0298	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AY.A69D	6	162903180	170918030	3280	-0.0577	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.3728	6	162906920	162982288	37	-0.0122	NEUTRAL	NA	1	PARK2
TCGA.A6.2675	6	162912387	170918030	3261	0.087	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CM.6161	6	162914276	170918030	3270	-0.0938	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DC.4745	6	162920211	163039900	57	-0.0633	NEUTRAL	NA	1	PARK2
TCGA.AA.3982	6	162920211	166025101	1300	-0.0098	NEUTRAL	NA	5	"C6orf118,PACRG,PARK2,PDE10A,QKI"
TCGA.F4.6460	6	162921562	170918030	3272	0.1145	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DM.A1HA	6	162933252	163509865	157	0.0063	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AA.3685	6	162933252	168745112	2416	-0.2313	NEUTRAL	NA	23	"C6orf118,CCR6,DACT2,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDE10A,PRR18,QKI,RNASET2,RPS6KA2,SFT2D1,T,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.EI.6508	6	162933252	170918030	3268	-0.0312	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CM.5860	6	162943060	163047391	50	-0.2578	NEUTRAL	NA	1	PARK2
TCGA.AZ.4308	6	162943060	170918030	3265	-0.0234	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3688	6	162943541	170918030	3266	-0.0528	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3971	6	162943541	170918030	3262	-0.0547	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.A6.4105	6	162951586	170918030	3261	-0.0203	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6812	6	162959693	163171969	59	-0.5129	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.DM.A1DA	6	162967095	170918030	3249	0.3478	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.G4.6294	6	162967095	170918030	3250	-0.0293	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3679	6	162979146	163524602	148	0.0048	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AG.3728	6	162994192	163025360	14	-0.4182	NEUTRAL	NA	1	PARK2
TCGA.AD.6548	6	162994192	170918030	3233	-0.047	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AU.3779	6	163027109	163295605	63	-0.2933	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AG.3728	6	163027109	170918030	3232	0.3089	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AY.5543	6	163035503	170918030	3194	-0.0285	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CM.5348	6	163036222	166315606	1389	-0.4626	NEUTRAL	NA	5	"C6orf118,PACRG,PARK2,PDE10A,QKI"
TCGA.CM.5860	6	163051105	163162059	20	0.0822	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AZ.6603	6	163053737	170918030	3207	-0.0531	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DC.4745	6	163059301	163111198	7	-0.1089	NEUTRAL	NA	1	PARK2
TCGA.AA.A01T	6	163059426	170918030	3211	0.0198	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.3592	6	163070020	166873822	1633	-0.0945	NEUTRAL	NA	10	"C6orf118,MPC1,PACRG,PARK2,PDE10A,PRR18,QKI,RPS6KA2,SFT2D1,T"
TCGA.AA.3693	6	163070020	170918030	3211	-0.0535	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DY.A1DG	6	163088782	170918030	3206	-0.0223	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AH.6544	6	163092866	170918030	3202	-0.3077	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CI.6624	6	163111198	163217211	20	-0.0275	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AA.3850	6	163120384	163259259	28	-0.48685	NEUTRAL	NA	2	"PACRG,PARK2"
TCGA.AA.A00L.01A	6	163148596	166720695	55	-0.2027	NEUTRAL	NA	7	"C6orf118,PACRG,PARK2,PDE10A,PRR18,QKI,T"
TCGA.A6.3810.01A	6	163148596	170893340	334	0.0933	NEUTRAL	NA	35	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AH.6549.01A	6	163149241	170892551	330	0.2303	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DM.A28H	6	163153372	170918030	3194	-0.0387	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6810	6	163159349	163220428	15	-0.457	NEUTRAL	NA	1	PACRG
TCGA.CM.5860	6	163171969	163217211	10	-0.3965	NEUTRAL	NA	1	PACRG
TCGA.DC.6682	6	163171969	170918030	3190	-0.1694	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AD.A5EK	6	163172450	170918030	3174	-0.0848	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F4.6459	6	163172450	170918030	3195	-0.0639	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6812	6	163172450	170918030	3190	-0.0307	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AF.4110	6	163183562	167234595	1841	0.1793	NEUTRAL	NA	9	"C6orf118,MPC1,PACRG,PDE10A,PRR18,QKI,RPS6KA2,SFT2D1,T"
TCGA.A6.3807	6	163183562	170918030	3176	-0.0516	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3692	6	163183562	170918030	3191	-0.2475	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3968	6	163183562	170918030	3189	-0.0626	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DC.4745	6	163183562	170918030	3190	-0.0038	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.3893	6	163201378	170918030	3164	-0.023	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.T9.A92H	6	163214109	170918030	3185	-0.0106	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AH.6643	6	163214168	170918030	3184	0.2699	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AY.A8YK	6	163214168	170918030	3184	-0.105	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CI.6624	6	163220002	163387376	51	-0.3696	NEUTRAL	NA	1	PACRG
TCGA.CM.5860	6	163220002	170918030	3174	0.2414	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.A6.6782	6	163232331	170918030	3171	-0.025	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6810	6	163232331	170918030	3179	0.1589	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3511	6	163233679	170918030	3173	0.0261	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3850	6	163268903	163947873	289	0.23445	NEUTRAL	NA	2	"PACRG,QKI"
TCGA.SS.A7HO	6	163268903	170918030	3174	-0.0132	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.G4.6626	6	163284037	163327681	22	-0.4343	NEUTRAL	NA	1	PACRG
TCGA.AG.3742	6	163284037	170918030	3140	-0.0053	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AU.3779	6	163296683	170918030	3167	-0.0003	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.G4.6626	6	163328594	170918030	3149	-0.023	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CA.5254	6	163349004	168433233	2170	-0.513	NEUTRAL	NA	20	"C6orf118,CCR6,FGFR1OP,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDE10A,PRR18,QKI,RNASET2,RPS6KA2,SFT2D1,T,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.CI.6624	6	163392063	168389847	2133	0.0487	NEUTRAL	NA	19	"C6orf118,CCR6,FGFR1OP,GPR31,HGC6.3,MLLT4,MPC1,PACRG,PDE10A,PRR18,QKI,RNASET2,RPS6KA2,SFT2D1,T,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.AZ.6607	6	163484988	170918030	3109	-0.4267	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DM.A1D0	6	163509865	170918030	3095	-0.0053	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DM.A1D6	6	163509865	170918030	3112	-0.0515	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3664	6	163524815	170918030	3100	-0.1105	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3679	6	163524815	170918030	3101	0.3516	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.5M.AAT4	6	163539391	170918030	3089	-0.0787	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.EI.6883	6	163703865	170918030	2990	-0.0016	NEUTRAL	NA	34	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DM.A1HB	6	163741336	165510100	736	-0.0685	NEUTRAL	NA	1	QKI
TCGA.DM.A1HA	6	163752285	170918030	2952	-0.0182	NEUTRAL	NA	33	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AY.6196	6	163934615	170905976	2860	-0.4599	NEUTRAL	NA	33	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3850	6	163969930	164211354	110	0.28855	NEUTRAL	NA	1	QKI
TCGA.F4.6854	6	164176941	164528839	225	-0.0432	NEUTRAL	NA	0	None
TCGA.AA.3850	6	164214295	164267046	24	0.33155	NEUTRAL	NA	0	None
TCGA.AA.3850	6	164310890	164534430	161	0.19845	NEUTRAL	NA	0	None
TCGA.AA.3850	6	164538121	165980171	563	-0.18175	NEUTRAL	NA	2	"C6orf118,PDE10A"
TCGA.F4.6854	6	164642529	165661645	389	-0.0322	NEUTRAL	NA	0	None
TCGA.AA.3680	6	164739166	170918030	2461	-0.0186	NEUTRAL	NA	32	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3977	6	164923096	164996966	31	-0.1567	NEUTRAL	NA	0	None
TCGA.AA.3872	6	164923096	170918030	2420	0.2227	NEUTRAL	NA	32	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6864	6	164948301	165066302	40	-0.3117	NEUTRAL	NA	0	None
TCGA.AA.3977	6	165005154	170918030	2383	0.0801	NEUTRAL	NA	32	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6864	6	165066375	165134319	16	0.0556	NEUTRAL	NA	0	None
TCGA.F5.6864	6	165147792	165409809	109	-0.3052	NEUTRAL	NA	0	None
TCGA.CM.6170	6	165226875	170918030	2329	0.0651	NEUTRAL	NA	32	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F5.6864	6	165410310	170918030	2246	-0.0139	NEUTRAL	NA	32	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.DM.A1HB	6	165526846	170918030	2150	0.0266	NEUTRAL	NA	32	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CK.5914.01A	6	165712860	167717370	111	-0.1909	NEUTRAL	NA	13	"C6orf118,CCR6,FGFR1OP,GPR31,MPC1,PDE10A,PRR18,RNASET2,RPS6KA2,SFT2D1,T,TCP10L2,UNC93A"
TCGA.AA.A02F.01A	6	165722967	170892551	238	-0.216	NEUTRAL	NA	32	"C6orf118,C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.A01C.01A	6	165862374	170892551	246	-0.1185	NEUTRAL	NA	31	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AZ.4684.01A	6	165862374	170893340	289	-0.0029	NEUTRAL	NA	31	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.A01J.01A	6	165956906	170892551	233	-0.1604	NEUTRAL	NA	31	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3850	6	165991584	170918030	1994	0.32745	NEUTRAL	NA	31	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3941	6	166007832	170918030	1987	-0.0373	NEUTRAL	NA	31	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PDE10A,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AA.3982	6	166025259	168538681	1030	0.256	NEUTRAL	NA	18	"CCR6,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDE10A,PRR18,RNASET2,RPS6KA2,SFT2D1,T,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.CM.5348	6	166316037	170918030	1833	-0.0528	NEUTRAL	NA	30	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDCD2,PHF10,PRR18,PSMB1,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.F4.6854	6	166566270	169821543	1377	-0.0044	NEUTRAL	NA	20	"CCR6,DACT2,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PRR18,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TCP10,TCP10L2,THBS2,TTLL2,UNC93A"
TCGA.AG.A00C.01A	6	166574284	167356441	44	0.1614	NEUTRAL	NA	6	"MPC1,PRR18,RNASET2,RPS6KA2,SFT2D1,T"
TCGA.AA.A00L.01A	6	166733623	169620256	136	0.0935	NEUTRAL	NA	18	"CCR6,DACT2,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,RNASET2,RPS6KA2,SFT2D1,SMOC2,TCP10,TCP10L2,THBS2,TTLL2,UNC93A"
TCGA.AA.A010.01A	6	166755847	168377296	121	0.274	NEUTRAL	NA	13	"CCR6,FGFR1OP,GPR31,HGC6.3,MLLT4,MPC1,RNASET2,RPS6KA2,SFT2D1,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.A6.3808.01A	6	166755847	169064671	156	-0.0983	NEUTRAL	NA	17	"CCR6,DACT2,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,RNASET2,RPS6KA2,SFT2D1,SMOC2,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.AA.A00F.01A	6	166755847	169621473	125	0.2913	NEUTRAL	NA	18	"CCR6,DACT2,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,RNASET2,RPS6KA2,SFT2D1,SMOC2,TCP10,TCP10L2,THBS2,TTLL2,UNC93A"
TCGA.AA.A00D.01A	6	166778829	167344503	29	-0.0071	NEUTRAL	NA	3	"MPC1,RNASET2,RPS6KA2"
TCGA.AA.A00N.01A	6	166796233	167352076	30	-0.1287	NEUTRAL	NA	3	"MPC1,RNASET2,RPS6KA2"
TCGA.AG.A01W.01A	6	166837935	167276447	13	-0.4374	NEUTRAL	NA	1	RPS6KA2
TCGA.AG.3592	6	166881644	170918030	1576	0.2937	NEUTRAL	NA	26	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,PDCD2,PHF10,PSMB1,RNASET2,RPS6KA2,SMOC2,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.3896	6	167032324	170918030	1469	0.2686	NEUTRAL	NA	26	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,PDCD2,PHF10,PSMB1,RNASET2,RPS6KA2,SMOC2,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AF.4110	6	167238611	170918030	1346	0.1585	NEUTRAL	NA	26	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,PDCD2,PHF10,PSMB1,RNASET2,RPS6KA2,SMOC2,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.4021	6	167239759	170918030	1346	-0.0624	NEUTRAL	NA	26	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,PDCD2,PHF10,PSMB1,RNASET2,RPS6KA2,SMOC2,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.A01W.01A	6	167280089	170734557	233	0.172	NEUTRAL	NA	22	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,PHF10,RNASET2,SMOC2,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.AG.A00C.01A	6	167424265	168271013	36	-0.0025	NEUTRAL	NA	8	"CCR6,FGFR1OP,GPR31,MLLT4,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.AG.3909.01A	6	167435880	167595211	16	0.0075	NEUTRAL	NA	4	"CCR6,FGFR1OP,GPR31,TCP10L2"
TCGA.AA.A00N.01A	6	167438270	167595211	15	0.2342	NEUTRAL	NA	4	"CCR6,FGFR1OP,GPR31,TCP10L2"
TCGA.AA.A00D.01A	6	167453373	170892551	155	0.0798	NEUTRAL	NA	24	"C6orf120,CCR6,DACT2,DLL1,ERMARD,FAM120B,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCP10,TCP10L2,TCTE3,THBS2,TTLL2,UNC93A,WDR27"
TCGA.CK.5914.01A	6	167719385	168430220	52	0.3685	NEUTRAL	NA	6	"HGC6.3,KIF25,MLLT4,TCP10,TTLL2,UNC93A"
TCGA.AG.3909.01A	6	167786605	167787791	2	-0.1973	NEUTRAL	NA	1	TCP10
TCGA.CM.4743	6	168108450	169646919	665	-0.3263	NEUTRAL	NA	7	"DACT2,FRMD1,HGC6.3,KIF25,MLLT4,SMOC2,THBS2"
TCGA.AG.A00C.01A	6	168272852	168351838	25	-0.3225	NEUTRAL	NA	1	MLLT4
TCGA.AG.3909.01A	6	168325662	168366398	11	-0.1054	NEUTRAL	NA	1	MLLT4
TCGA.AA.3967.01A	6	168348926	169617824	38	-0.1885	NEUTRAL	NA	7	"DACT2,FRMD1,HGC6.3,KIF25,MLLT4,SMOC2,THBS2"
TCGA.AG.A014.01A	6	168355114	170892551	129	0.0048	NEUTRAL	NA	17	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,FRMD1,HGC6.3,KIF25,MLLT4,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.A6.6138	6	168356151	170918030	1006	0.3535	NEUTRAL	NA	17	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,FRMD1,HGC6.3,KIF25,MLLT4,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.AG.3891.01A	6	168366398	169064671	31	-0.1525	NEUTRAL	NA	6	"DACT2,FRMD1,HGC6.3,KIF25,MLLT4,SMOC2"
TCGA.A6.2677	6	168386574	170918030	947	-0.0722	NEUTRAL	NA	15	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,FRMD1,KIF25,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.AG.3594	6	168386574	170918030	999	-0.0838	NEUTRAL	NA	15	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,FRMD1,KIF25,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.CI.6624	6	168401641	170905976	984	0.0548	NEUTRAL	NA	15	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,FRMD1,KIF25,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.A01Q.01A	6	168431394	169629620	42	-0.3189	NEUTRAL	NA	5	"DACT2,FRMD1,KIF25,SMOC2,THBS2"
TCGA.CK.5914.01A	6	168431394	170033006	62	-0.3243	NEUTRAL	NA	6	"DACT2,FRMD1,KIF25,SMOC2,THBS2,WDR27"
TCGA.CA.5254	6	168442474	169447482	438	-0.0468	NEUTRAL	NA	4	"DACT2,FRMD1,KIF25,SMOC2"
TCGA.AG.4009.01A	6	168443210	169053585	21	0.0754	NEUTRAL	NA	4	"DACT2,FRMD1,KIF25,SMOC2"
TCGA.AA.A010.01A	6	168457769	168476337	12	-0.2769	NEUTRAL	NA	1	FRMD1
TCGA.AG.3906.01A	6	168457769	169053585	20	-0.1617	NEUTRAL	NA	3	"DACT2,FRMD1,SMOC2"
TCGA.AG.A00C.01A	6	168457769	170059150	51	-0.061	NEUTRAL	NA	5	"DACT2,FRMD1,SMOC2,THBS2,WDR27"
TCGA.AG.A02G.01A	6	168467986	170892551	116	-0.1602	NEUTRAL	NA	14	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,FRMD1,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.A010.01A	6	168479545	170038587	47	0.2648	NEUTRAL	NA	5	"DACT2,FRMD1,SMOC2,THBS2,WDR27"
TCGA.A6.2672	6	168541896	170918030	938	-0.4239	NEUTRAL	NA	13	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.A6.5665	6	168541896	170918030	939	-0.3115	NEUTRAL	NA	13	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.3982	6	168547271	170596698	838	0.2229	NEUTRAL	NA	9	"C6orf120,DACT2,DLL1,ERMARD,PHF10,SMOC2,TCTE3,THBS2,WDR27"
TCGA.AZ.4616	6	168607207	170918030	907	-0.3948	NEUTRAL	NA	13	"C6orf120,DACT2,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.3685	6	168784758	170918030	852	-0.234	NEUTRAL	NA	12	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,SMOC2,TBP,TCTE3,THBS2,WDR27"
TCGA.AG.4009.01A	6	169064671	170051967	30	-0.3224	NEUTRAL	NA	3	"SMOC2,THBS2,WDR27"
TCGA.CA.5254	6	169447571	170918030	528	-0.5132	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AH.6644	6	169551114	170918030	466	0.1753	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.A00L.01A	6	169621473	170156763	37	-0.213	NEUTRAL	NA	6	"C6orf120,ERMARD,PHF10,TCTE3,THBS2,WDR27"
TCGA.AA.A00F.01A	6	169628175	170102584	14	0.2082	NEUTRAL	NA	3	"C6orf120,THBS2,WDR27"
TCGA.AF.3914.01A	6	169632026	170892551	95	-0.3251	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.A01F.01A	6	169634811	170892551	72	0.102	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.3980.01A	6	169640495	170892551	94	-0.0481	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.A017.01A	6	169640495	170893340	88	-0.2127	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.3930.01A	6	169641817	170892551	93	0.1003	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.A01K.01A	6	169641817	170892551	85	-0.3334	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AG.3611.01A	6	169641817	170892551	67	-0.4423	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AG.3906.01A	6	169646238	170034474	9	-0.2702	NEUTRAL	NA	2	"THBS2,WDR27"
TCGA.AG.3891.01A	6	169646238	170892551	89	-0.2578	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.CM.4743	6	169647021	170918030	409	-0.0394	NEUTRAL	NA	11	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,THBS2,WDR27"
TCGA.AA.A02K.01A	6	169857607	170892632	97	0.0663	NEUTRAL	NA	10	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,WDR27"
TCGA.AG.3906.01A	6	170051967	170112435	17	-0.1118	NEUTRAL	NA	3	"C6orf120,PHF10,WDR27"
TCGA.AA.A01Q.01A	6	170103067	170176397	28	-0.2419	NEUTRAL	NA	4	"C6orf120,ERMARD,PHF10,TCTE3"
TCGA.AA.3967.01A	6	170103067	170892551	62	-0.2696	NEUTRAL	NA	9	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3"
TCGA.AG.3906.01A	6	170140234	170892551	53	-0.1061	NEUTRAL	NA	7	"DLL1,ERMARD,FAM120B,PDCD2,PSMB1,TBP,TCTE3"
TCGA.A6.3808.01A	6	170143134	170893340	55	0.1022	NEUTRAL	NA	7	"DLL1,ERMARD,FAM120B,PDCD2,PSMB1,TBP,TCTE3"
TCGA.AG.4009.01A	6	170151404	170181409	18	0.001	NEUTRAL	NA	2	"ERMARD,TCTE3"
TCGA.AA.A00L.01A	6	170159037	170181409	13	0.2581	NEUTRAL	NA	1	ERMARD
TCGA.AA.A00F.01A	6	170162478	170892551	42	0.327	NEUTRAL	NA	6	"DLL1,ERMARD,FAM120B,PDCD2,PSMB1,TBP"
TCGA.AG.3909.01A	6	170166707	170892551	40	-0.4703	NEUTRAL	NA	6	"DLL1,ERMARD,FAM120B,PDCD2,PSMB1,TBP"
TCGA.AM.5820	6	170180606	170453350	84	-0.1297	NEUTRAL	NA	1	ERMARD
TCGA.AM.5820	6	170496353	170572740	24	-0.2314	NEUTRAL	NA	0	None
TCGA.AA.A00L.01A	6	170591883	170892551	32	-0.1845	NEUTRAL	NA	5	"DLL1,FAM120B,PDCD2,PSMB1,TBP"
TCGA.CK.5914.01A	6	170598652	170855135	14	0.3264	NEUTRAL	NA	3	"DLL1,FAM120B,PSMB1"
TCGA.AA.3982	6	170622765	170918030	95	0.1799	NEUTRAL	NA	4	"FAM120B,PDCD2,PSMB1,TBP"
TCGA.AG.4009.01A	6	170626442	170881213	21	-0.3477	NEUTRAL	NA	3	"FAM120B,PSMB1,TBP"
TCGA.AA.A01Q.01A	6	170626442	170892551	27	-0.0027	NEUTRAL	NA	4	"FAM120B,PDCD2,PSMB1,TBP"
TCGA.AG.A00C.01A	6	170632150	170886619	21	-0.1919	NEUTRAL	NA	4	"FAM120B,PDCD2,PSMB1,TBP"
TCGA.AA.A010.01A	6	170844261	170870852	8	0.3204	NEUTRAL	NA	2	"PSMB1,TBP"
TCGA.AG.4015	7	44407	46238	2	-0.134	NEUTRAL	NA	0	None
TCGA.CM.5344	7	44407	65253	12	-0.0036	NEUTRAL	NA	0	None
TCGA.F4.6460	7	44407	65764	14	-0.0238	NEUTRAL	NA	0	None
TCGA.AY.5543	7	44407	85110	18	0.0695	NEUTRAL	NA	0	None
TCGA.AA.3977	7	44407	179187	67	0.1001	NEUTRAL	NA	0	None
TCGA.F4.6461	7	44407	1140514	145	-0.1196	NEUTRAL	NA	13	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,FAM20C,GET4,GPER1,GPR146,PDGFA,PRKAR1B,SUN1,WI2-2373I1.2"
TCGA.DY.A1DG	7	44407	1936487	267	-0.0479	NEUTRAL	NA	22	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.A6.6137	7	44407	2002732	282	-0.0136	NEUTRAL	NA	22	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.QG.A5Z2	7	44407	2150214	315	-0.2815	NEUTRAL	NA	22	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.DC.6155	7	44407	2930620	519	-0.1653	NEUTRAL	NA	34	"ADAP1,AMZ1,BRAT1,C7orf50,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AG.3727	7	44407	3181996	655	0.1092	NEUTRAL	NA	35	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3530	7	44407	3338688	738	0.3096	NEUTRAL	NA	35	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.3L.AA1B	7	44407	3609711	848	0.2471	NEUTRAL	NA	36	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.CM.6678	7	44407	3612795	852	0.2746	NEUTRAL	NA	36	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3518	7	44407	3919480	984	0.0444	NEUTRAL	NA	36	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AF.2692	7	44407	4167273	1101	-0.022	NEUTRAL	NA	36	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3856	7	44407	4285854	1169	0.2014	NEUTRAL	NA	36	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.EI.6511	7	44407	5880257	1561	0.3241	NEUTRAL	NA	50	"ACTB,ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,PAPOLB,PDGFA,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.EI.6508	7	44407	6362650	1639	-0.0483	NEUTRAL	NA	60	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.BM.6198	7	44407	6422799	1645	0.37515	NEUTRAL	NA	62	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.A6.6782	7	44407	6990890	1732	0.3335	NEUTRAL	NA	71	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3867	7	44407	7040906	1740	0.3135	NEUTRAL	NA	71	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.CL.4957	7	44407	7043483	1738	0.0287	NEUTRAL	NA	71	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3681	7	44407	9018290	2766	0.3489	NEUTRAL	NA	79	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AD.6965	7	44407	9760249	3072	0.0615	NEUTRAL	NA	79	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.G4.6311	7	44407	10775412	3462	0.2748	NEUTRAL	NA	79	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.A6.5662	7	44407	11596933	3800	0.0379	NEUTRAL	NA	82	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.A6.6648	7	44407	11670810	3865	0.2227	NEUTRAL	NA	82	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AG.3594	7	44407	11916353	3989	-0.0084	NEUTRAL	NA	82	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.A6.2681	7	44407	11930134	3998	0.2776	NEUTRAL	NA	82	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3989	7	44407	11938059	4007	0.0267	NEUTRAL	NA	82	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AF.2689	7	44407	12064625	4070	0.2673	NEUTRAL	NA	82	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.CM.6163	7	44407	13182614	4501	0.1496	NEUTRAL	NA	86	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.A6.6653	7	44407	13211262	4533	-1.00E-04	NEUTRAL	NA	86	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3695	7	44407	13283418	4569	0.3273	NEUTRAL	NA	86	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3866	7	44407	13462619	4615	0.2523	NEUTRAL	NA	86	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.D5.5539	7	44407	14722846	5127	0.2627	NEUTRAL	NA	88	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DGKB,DNAAF5,EIF2AK1,EIF3B,ELFN1,ETV1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.D5.6930	7	44407	16565339	5868	0.0135	NEUTRAL	NA	92	"ACTB,ADAP1,AGMO,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DGKB,DNAAF5,EIF2AK1,EIF3B,ELFN1,ETV1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,ISPD,KDELR2,LFNG,MAD1L1,MAFK,MEOX2,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SOSTDC1,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AD.6963	7	44407	16595756	5903	0.2784	NEUTRAL	NA	93	"ACTB,ADAP1,AGMO,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DGKB,DNAAF5,EIF2AK1,EIF3B,ELFN1,ETV1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,ISPD,KDELR2,LFNG,LRRC72,MAD1L1,MAFK,MEOX2,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SOSTDC1,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3673	7	44407	18921121	6849	0.0904	NEUTRAL	NA	102	Too-Many
TCGA.F5.6465	7	44407	19462836	7058	0.0182	NEUTRAL	NA	104	Too-Many
TCGA.AA.A01T	7	44407	21551069	7890	0.3356	NEUTRAL	NA	111	Too-Many
TCGA.AG.A01Y	7	44407	22528589	8388	0.0461	NEUTRAL	NA	115	Too-Many
TCGA.DM.A1D9	7	44407	22693627	8447	0.1423	NEUTRAL	NA	115	Too-Many
TCGA.CK.6747	7	44407	24273694	8980	0.0328	NEUTRAL	NA	127	Too-Many
TCGA.AA.3517	7	44407	25276252	9441	0.2848	NEUTRAL	NA	134	Too-Many
TCGA.5M.AAT4	7	44407	25773403	9714	0.3318	NEUTRAL	NA	134	Too-Many
TCGA.AF.2693	7	44407	27122562	10179	0.0116	NEUTRAL	NA	140	Too-Many
TCGA.AG.3882	7	44407	27507832	10300	0.329	NEUTRAL	NA	152	Too-Many
TCGA.EI.6512	7	44407	29835429	11303	0.3083	NEUTRAL	NA	160	Too-Many
TCGA.AA.3950	7	44407	30014067	11366	0.2708	NEUTRAL	NA	162	Too-Many
TCGA.G4.6322	7	44407	31605027	11935	0.0274	NEUTRAL	NA	177	Too-Many
TCGA.AA.3522	7	44407	33067129	12456	0.0157	NEUTRAL	NA	184	Too-Many
TCGA.QL.A97D	7	44407	33277291	12524	0.064	NEUTRAL	NA	186	Too-Many
TCGA.AG.3881	7	44407	33423959	12565	0.064	NEUTRAL	NA	186	Too-Many
TCGA.AZ.4614	7	44407	34090733	12687	0.0241	NEUTRAL	NA	187	Too-Many
TCGA.A6.2686	7	44407	35095244	13096	0.2514	NEUTRAL	NA	189	Too-Many
TCGA.AA.3692	7	44407	38280223	14383	0.1503	NEUTRAL	NA	202	Too-Many
TCGA.AA.3848	7	44407	38287926	14387	0.0351	NEUTRAL	NA	202	Too-Many
TCGA.AG.3883	7	44407	38287926	14385	0.0719	NEUTRAL	NA	202	Too-Many
TCGA.AA.3548	7	44407	38290713	14385	0.0964	NEUTRAL	NA	202	Too-Many
TCGA.AA.3675	7	44407	38290713	14384	0.0104	NEUTRAL	NA	202	Too-Many
TCGA.AA.3684	7	44407	38290713	14382	0.1983	NEUTRAL	NA	202	Too-Many
TCGA.AA.3812	7	44407	38290713	14388	0.2641	NEUTRAL	NA	202	Too-Many
TCGA.AA.3831	7	44407	38290713	14364	0.013	NEUTRAL	NA	202	Too-Many
TCGA.AA.3860	7	44407	38290713	14384	0.0639	NEUTRAL	NA	202	Too-Many
TCGA.AA.3869	7	44407	38290713	14363	0.3338	NEUTRAL	NA	202	Too-Many
TCGA.AA.3971	7	44407	38290713	14368	0.339	NEUTRAL	NA	202	Too-Many
TCGA.AG.3591	7	44407	38290713	14384	0.1599	NEUTRAL	NA	202	Too-Many
TCGA.AG.3901	7	44407	38290713	14351	0.0266	NEUTRAL	NA	202	Too-Many
TCGA.AA.3529	7	44407	38303119	14374	0.3457	NEUTRAL	NA	203	Too-Many
TCGA.AA.3556	7	44407	38303119	14346	0.0257	NEUTRAL	NA	203	Too-Many
TCGA.AA.3854	7	44407	38303119	14388	0.0022	NEUTRAL	NA	203	Too-Many
TCGA.AA.3875	7	44407	38303119	14385	0.1679	NEUTRAL	NA	203	Too-Many
TCGA.AA.3973	7	44407	38303119	14367	0.0091	NEUTRAL	NA	203	Too-Many
TCGA.CI.6621	7	44407	38602966	14505	0.066	NEUTRAL	NA	204	Too-Many
TCGA.D5.6932	7	44407	40399192	15023	-0.1758	NEUTRAL	NA	211	Too-Many
TCGA.WS.AB45	7	44407	42751964	15891	0.17	NEUTRAL	NA	213	Too-Many
TCGA.AF.6136	7	44407	46430672	16881	0.2442	NEUTRAL	NA	251	Too-Many
TCGA.F5.6812	7	44407	50035644	18223	0.2619	NEUTRAL	NA	262	Too-Many
TCGA.AA.3561	7	44407	50688131	18506	0.0159	NEUTRAL	NA	267	Too-Many
TCGA.DM.A1HB	7	44407	50729127	18171	0.0078	NEUTRAL	NA	267	Too-Many
TCGA.AA.3713	7	44407	52554861	19278	0.0147	NEUTRAL	NA	268	Too-Many
TCGA.A6.6654	7	44407	55354769	20244	0.1853	NEUTRAL	NA	272	Too-Many
TCGA.SS.A7HO	7	44407	56755582	20558	-0.0384	NEUTRAL	NA	284	Too-Many
TCGA.CM.6169	7	44407	61074193	20570	0.075	NEUTRAL	NA	286	Too-Many
TCGA.CM.5341	7	44407	61888127	20694	0.332	NEUTRAL	NA	286	Too-Many
TCGA.AA.3976	7	44407	62404705	20700	0.3439	NEUTRAL	NA	286	Too-Many
TCGA.D5.6926	7	44407	62653306	20708	0.3159	NEUTRAL	NA	286	Too-Many
TCGA.AY.4070	7	44407	63302110	20677	0.1759	NEUTRAL	NA	286	Too-Many
TCGA.CI.6619	7	44407	64457743	21006	0.2645	NEUTRAL	NA	296	Too-Many
TCGA.CM.6675	7	44407	73108923	22893	0.0002	NEUTRAL	NA	323	Too-Many
TCGA.D5.5538	7	44407	76137374	23203	0.0079	NEUTRAL	NA	360	Too-Many
TCGA.RU.A8FL	7	44407	78801611	24056	0.2426	NEUTRAL	NA	370	Too-Many
TCGA.4T.AA8H	7	44407	78829288	24060	0.3611	NEUTRAL	NA	370	Too-Many
TCGA.T9.A92H	7	44407	80880681	24732	0.0297	NEUTRAL	NA	374	Too-Many
TCGA.G4.6298	7	44407	83776916	25725	0.3044	NEUTRAL	NA	379	Too-Many
TCGA.A6.6650	7	44407	84115235	23697	0.3534	NEUTRAL	NA	379	Too-Many
TCGA.A6.5667	7	44407	86747875	26407	0.3162	NEUTRAL	NA	382	Too-Many
TCGA.AA.3952	7	44407	89038775	26988	0.029	NEUTRAL	NA	395	Too-Many
TCGA.DC.6682	7	44407	94330484	28332	0.0973	NEUTRAL	NA	426	Too-Many
TCGA.G5.6233	7	44407	96441440	28979	0.2649	NEUTRAL	NA	436	Too-Many
TCGA.NH.A50V	7	44407	99678621	29477	0.0275	NEUTRAL	NA	479	Too-Many
TCGA.AY.A69D	7	44407	100861212	29699	0.0112	NEUTRAL	NA	532	Too-Many
TCGA.CM.6168	7	44407	101350789	29854	0.248	NEUTRAL	NA	537	Too-Many
TCGA.AA.3949	7	44407	103451090	30216	-0.0033	NEUTRAL	NA	563	Too-Many
TCGA.AA.3864	7	44407	103463997	30157	-0.0049	NEUTRAL	NA	563	Too-Many
TCGA.AA.3972	7	44407	103463997	30236	0.0622	NEUTRAL	NA	563	Too-Many
TCGA.D5.6534	7	44407	106018958	31079	0.202	NEUTRAL	NA	573	Too-Many
TCGA.AY.A71X	7	44407	106073451	31187	0.0062	NEUTRAL	NA	573	Too-Many
TCGA.AA.A01R	7	44407	107382351	31518	0.0021	NEUTRAL	NA	582	Too-Many
TCGA.AA.3984	7	44407	109640997	32203	0.0112	NEUTRAL	NA	592	Too-Many
TCGA.AF.A56N	7	44407	110382064	32414	0.0207	NEUTRAL	NA	593	Too-Many
TCGA.D5.6535	7	44407	110391588	32489	0.3044	NEUTRAL	NA	593	Too-Many
TCGA.AZ.6600	7	44407	110427518	32492	0.2702	NEUTRAL	NA	593	Too-Many
TCGA.D5.6539	7	44407	110586126	32482	0.3514	NEUTRAL	NA	593	Too-Many
TCGA.D5.5537	7	44407	110920215	32528	0.0102	NEUTRAL	NA	594	Too-Many
TCGA.EI.7004	7	44407	114083549	33234	0.3253	NEUTRAL	NA	603	Too-Many
TCGA.AA.3532	7	44407	115573725	33584	0	NEUTRAL	NA	604	Too-Many
TCGA.A6.5666	7	44407	117217986	33956	-0.0098	NEUTRAL	NA	614	Too-Many
TCGA.AF.4110	7	44407	117711814	34111	0.2477	NEUTRAL	NA	615	Too-Many
TCGA.A6.2674	7	44407	127089356	36434	0.1366	NEUTRAL	NA	644	Too-Many
TCGA.AG.A020	7	44407	127575549	36507	0.0734	NEUTRAL	NA	649	Too-Many
TCGA.D5.6931	7	44407	131563442	37442	0.0141	NEUTRAL	NA	689	Too-Many
TCGA.AA.3845	7	44407	133174252	38056	0	NEUTRAL	NA	692	Too-Many
TCGA.AG.3598	7	44407	133188144	38045	0.0291	NEUTRAL	NA	692	Too-Many
TCGA.G5.6235	7	44407	133857288	38299	0.2284	NEUTRAL	NA	693	Too-Many
TCGA.NH.A5IV	7	44407	134572671	38524	-0.0159	NEUTRAL	NA	699	Too-Many
TCGA.AF.6672	7	44407	135335372	38778	0.0108	NEUTRAL	NA	706	Too-Many
TCGA.A6.2682	7	44407	136058031	38456	0.1447	NEUTRAL	NA	711	Too-Many
TCGA.AA.3968	7	44407	137416232	39521	0.3209	NEUTRAL	NA	714	Too-Many
TCGA.CK.4947	7	44407	140969510	40416	0.2954	NEUTRAL	NA	744	Too-Many
TCGA.DC.6683	7	44407	142816926	40941	0.3002	NEUTRAL	NA	767	Too-Many
TCGA.AA.3956	7	44407	145996005	41691	0.0028	NEUTRAL	NA	801	Too-Many
TCGA.AA.3852	7	44407	147714780	42426	0.3709	NEUTRAL	NA	801	Too-Many
TCGA.AG.3890	7	44407	148274785	42528	0.2063	NEUTRAL	NA	801	Too-Many
TCGA.F4.6570	7	44407	149604819	42980	0.0093	NEUTRAL	NA	818	Too-Many
TCGA.AA.3947	7	44407	149618386	42911	0.0007	NEUTRAL	NA	818	Too-Many
TCGA.F4.6704	7	44407	149933705	42923	0.3214	NEUTRAL	NA	818	Too-Many
TCGA.CA.5254	7	44407	151767474	43475	0	NEUTRAL	NA	858	Too-Many
TCGA.AG.A02N	7	44407	152708860	43717	0.0032	NEUTRAL	NA	861	Too-Many
TCGA.AH.6897	7	44407	154427671	44342	0.236	NEUTRAL	NA	862	Too-Many
TCGA.D5.6898	7	44407	154478781	44378	0.3351	NEUTRAL	NA	862	Too-Many
TCGA.5M.AAT5	7	44407	158102523	45775	0.0294	NEUTRAL	NA	877	Too-Many
TCGA.DC.6681	7	44407	159116964	45978	0.0343	NEUTRAL	NA	881	Too-Many
TCGA.5M.AAT6	7	44407	159119219	46066	0.0021	NEUTRAL	NA	881	Too-Many
TCGA.A6.2675	7	44407	159119219	45713	0.2212	NEUTRAL	NA	881	Too-Many
TCGA.A6.2677	7	44407	159119219	42370	0.0318	NEUTRAL	NA	881	Too-Many
TCGA.A6.2678	7	44407	159119219	46044	0.0047	NEUTRAL	NA	881	Too-Many
TCGA.A6.2680	7	44407	159119219	46001	0.2833	NEUTRAL	NA	881	Too-Many
TCGA.A6.2683	7	44407	159119219	46020	0.0315	NEUTRAL	NA	881	Too-Many
TCGA.A6.2684	7	44407	159119219	42344	0.0113	NEUTRAL	NA	881	Too-Many
TCGA.A6.2685	7	44407	159119219	45983	0.2418	NEUTRAL	NA	881	Too-Many
TCGA.A6.3809	7	44407	159119219	42364	-0.0113	NEUTRAL	NA	881	Too-Many
TCGA.A6.4105	7	44407	159119219	46074	0.0581	NEUTRAL	NA	881	Too-Many
TCGA.A6.4107	7	44407	159119219	46034	0.2842	NEUTRAL	NA	881	Too-Many
TCGA.A6.5657	7	44407	159119219	45958	0.2065	NEUTRAL	NA	881	Too-Many
TCGA.A6.5664	7	44407	159119219	45958	-0.0134	NEUTRAL	NA	881	Too-Many
TCGA.A6.6138	7	44407	159119219	46080	0.3578	NEUTRAL	NA	881	Too-Many
TCGA.A6.6141	7	44407	159119219	46033	0.0047	NEUTRAL	NA	881	Too-Many
TCGA.A6.6142	7	44407	159119219	46071	0.2879	NEUTRAL	NA	881	Too-Many
TCGA.A6.6651	7	44407	159119219	45884	0.1059	NEUTRAL	NA	881	Too-Many
TCGA.A6.6780	7	44407	159119219	45961	0	NEUTRAL	NA	881	Too-Many
TCGA.A6.6781	7	44407	159119219	42287	-5.00E-04	NEUTRAL	NA	881	Too-Many
TCGA.A6.A565	7	44407	159119219	45766	0.0939	NEUTRAL	NA	881	Too-Many
TCGA.A6.A566	7	44407	159119219	45716	0.2823	NEUTRAL	NA	881	Too-Many
TCGA.A6.A567	7	44407	159119219	45746	0.0385	NEUTRAL	NA	881	Too-Many
TCGA.AA.3489	7	44407	159119219	45930	0.1462	NEUTRAL	NA	881	Too-Many
TCGA.AA.3492	7	44407	159119219	46046	-0.0012	NEUTRAL	NA	881	Too-Many
TCGA.AA.3494	7	44407	159119219	46040	0.3221	NEUTRAL	NA	881	Too-Many
TCGA.AA.3510	7	44407	159119219	46038	-0.0026	NEUTRAL	NA	881	Too-Many
TCGA.AA.3511	7	44407	159119219	45967	0.3133	NEUTRAL	NA	881	Too-Many
TCGA.AA.3514	7	44407	159119219	46046	0.0041	NEUTRAL	NA	881	Too-Many
TCGA.AA.3516	7	44407	159119219	45993	0.0078	NEUTRAL	NA	881	Too-Many
TCGA.AA.3519	7	44407	159119219	46060	0.271	NEUTRAL	NA	881	Too-Many
TCGA.AA.3526	7	44407	159119219	46043	0.0022	NEUTRAL	NA	881	Too-Many
TCGA.AA.3527	7	44407	159119219	46050	0.0055	NEUTRAL	NA	881	Too-Many
TCGA.AA.3531	7	44407	159119219	46040	0.0153	NEUTRAL	NA	881	Too-Many
TCGA.AA.3543	7	44407	159119219	46015	0.0045	NEUTRAL	NA	881	Too-Many
TCGA.AA.3549	7	44407	159119219	46083	0.0181	NEUTRAL	NA	881	Too-Many
TCGA.AA.3555	7	44407	159119219	46077	0.0024	NEUTRAL	NA	881	Too-Many
TCGA.AA.3558	7	44407	159119219	46067	0.0283	NEUTRAL	NA	881	Too-Many
TCGA.AA.3662	7	44407	159119219	46054	0.3497	NEUTRAL	NA	881	Too-Many
TCGA.AA.3663	7	44407	159119219	45955	-0.0031	NEUTRAL	NA	881	Too-Many
TCGA.AA.3678	7	44407	159119219	46092	-0.0155	NEUTRAL	NA	881	Too-Many
TCGA.AA.3710	7	44407	159119219	46047	0.0035	NEUTRAL	NA	881	Too-Many
TCGA.AA.3715	7	44407	159119219	46091	0.0085	NEUTRAL	NA	881	Too-Many
TCGA.AA.3833	7	44407	159119219	46089	0.011	NEUTRAL	NA	881	Too-Many
TCGA.AA.3837	7	44407	159119219	46088	0.0147	NEUTRAL	NA	881	Too-Many
TCGA.AA.3846	7	44407	159119219	46019	-0.0001	NEUTRAL	NA	881	Too-Many
TCGA.AA.3851	7	44407	159119219	46011	0.0466	NEUTRAL	NA	881	Too-Many
TCGA.AA.3870	7	44407	159119219	46045	0.3511	NEUTRAL	NA	881	Too-Many
TCGA.AA.3877	7	44407	159119219	46049	0.3674	NEUTRAL	NA	881	Too-Many
TCGA.AA.3979	7	44407	159119219	45917	0.0052	NEUTRAL	NA	881	Too-Many
TCGA.AA.3986	7	44407	159119219	46031	0.0009	NEUTRAL	NA	881	Too-Many
TCGA.AA.A01P	7	44407	159119219	46007	0.0203	NEUTRAL	NA	881	Too-Many
TCGA.AA.A01S	7	44407	159119219	46039	-0.00075	NEUTRAL	NA	881	Too-Many
TCGA.AA.A01V	7	44407	159119219	46028	-0.0012	NEUTRAL	NA	881	Too-Many
TCGA.AA.A01X	7	44407	159119219	45988	0.2972	NEUTRAL	NA	881	Too-Many
TCGA.AA.A022	7	44407	159119219	45985	0.005	NEUTRAL	NA	881	Too-Many
TCGA.AA.A03F	7	44407	159119219	46034	0.0037	NEUTRAL	NA	881	Too-Many
TCGA.AD.5900	7	44407	159119219	45974	0.0114	NEUTRAL	NA	881	Too-Many
TCGA.AD.6889	7	44407	159119219	46019	0.0096	NEUTRAL	NA	881	Too-Many
TCGA.AD.6890	7	44407	159119219	46025	0.2694	NEUTRAL	NA	881	Too-Many
TCGA.AD.6895	7	44407	159119219	46022	0	NEUTRAL	NA	881	Too-Many
TCGA.AD.6901	7	44407	159119219	45926	0.1475	NEUTRAL	NA	881	Too-Many
TCGA.AD.6964	7	44407	159119219	46031	0.0101	NEUTRAL	NA	881	Too-Many
TCGA.AD.A5EJ	7	44407	159119219	45810	0.012	NEUTRAL	NA	881	Too-Many
TCGA.AF.2687	7	44407	159119219	45943	0.1164	NEUTRAL	NA	881	Too-Many
TCGA.AF.2691	7	44407	159119219	46054	0.04	NEUTRAL	NA	881	Too-Many
TCGA.AF.5654	7	44407	159119219	45945	0.3783	NEUTRAL	NA	881	Too-Many
TCGA.AF.6655	7	44407	159119219	45959	0.3427	NEUTRAL	NA	881	Too-Many
TCGA.AF.A56L	7	44407	159119219	45956	0.0947	NEUTRAL	NA	881	Too-Many
TCGA.AG.3574	7	44407	159119219	46079	0.0003	NEUTRAL	NA	881	Too-Many
TCGA.AG.3575	7	44407	159119219	46070	0.0054	NEUTRAL	NA	881	Too-Many
TCGA.AG.3580	7	44407	159119219	46066	-0.0058	NEUTRAL	NA	881	Too-Many
TCGA.AG.3583	7	44407	159119219	44906	0.0076	NEUTRAL	NA	881	Too-Many
TCGA.AG.3599	7	44407	159119219	46033	0.1197	NEUTRAL	NA	881	Too-Many
TCGA.AG.3602	7	44407	159119219	45851	0.0154	NEUTRAL	NA	881	Too-Many
TCGA.AG.3728	7	44407	159119219	46095	0.253	NEUTRAL	NA	881	Too-Many
TCGA.AG.3731	7	44407	159119219	46081	0.0277	NEUTRAL	NA	881	Too-Many
TCGA.AG.3732	7	44407	159119219	45920	0.0182	NEUTRAL	NA	881	Too-Many
TCGA.AG.3878	7	44407	159119219	46092	0.2159	NEUTRAL	NA	881	Too-Many
TCGA.AG.3887	7	44407	159119219	45902	-0.0018	NEUTRAL	NA	881	Too-Many
TCGA.AG.3892	7	44407	159119219	45940	0.0042	NEUTRAL	NA	881	Too-Many
TCGA.AG.3894	7	44407	159119219	45942	0	NEUTRAL	NA	881	Too-Many
TCGA.AG.3896	7	44407	159119219	45945	0.3679	NEUTRAL	NA	881	Too-Many
TCGA.AG.3898	7	44407	159119219	45896	0.3376	NEUTRAL	NA	881	Too-Many
TCGA.AG.4008	7	44407	159119219	45762	0.1248	NEUTRAL	NA	881	Too-Many
TCGA.AG.4021	7	44407	159119219	46009	0.021	NEUTRAL	NA	881	Too-Many
TCGA.AH.6544	7	44407	159119219	45987	0.101	NEUTRAL	NA	881	Too-Many
TCGA.AH.6547	7	44407	159119219	46004	0.0705	NEUTRAL	NA	881	Too-Many
TCGA.AH.6643	7	44407	159119219	45980	0.2143	NEUTRAL	NA	881	Too-Many
TCGA.AH.6903	7	44407	159119219	45970	0.0078	NEUTRAL	NA	881	Too-Many
TCGA.AM.5821	7	44407	159119219	45906	-0.0034	NEUTRAL	NA	881	Too-Many
TCGA.AU.6004	7	44407	159119219	45731	0.0094	NEUTRAL	NA	881	Too-Many
TCGA.AY.6196	7	44407	159119219	45568	0.0757	NEUTRAL	NA	881	Too-Many
TCGA.AY.6197	7	44407	159119219	45056	0.007	NEUTRAL	NA	881	Too-Many
TCGA.AZ.4315	7	44407	159119219	46024	0.0089	NEUTRAL	NA	881	Too-Many
TCGA.AZ.4323	7	44407	159119219	45899	-0.0145	NEUTRAL	NA	881	Too-Many
TCGA.AZ.4615	7	44407	159119219	46042	0.0228	NEUTRAL	NA	881	Too-Many
TCGA.AZ.4616	7	44407	159119219	45938	-0.0052	NEUTRAL	NA	881	Too-Many
TCGA.AZ.6599	7	44407	159119219	46082	0.0107	NEUTRAL	NA	881	Too-Many
TCGA.AZ.6601	7	44407	159119219	46074	0.0154	NEUTRAL	NA	881	Too-Many
TCGA.AZ.6605	7	44407	159119219	45921	0.1945	NEUTRAL	NA	881	Too-Many
TCGA.CA.5255	7	44407	159119219	45934	0.3266	NEUTRAL	NA	881	Too-Many
TCGA.CA.5256	7	44407	159119219	45708	0.2674	NEUTRAL	NA	881	Too-Many
TCGA.CA.6716	7	44407	159119219	45984	0	NEUTRAL	NA	881	Too-Many
TCGA.CA.6717	7	44407	159119219	45886	0.0025	NEUTRAL	NA	881	Too-Many
TCGA.CA.6718	7	44407	159119219	45924	0.0033	NEUTRAL	NA	881	Too-Many
TCGA.CI.6620	7	44407	159119219	45967	0.0772	NEUTRAL	NA	881	Too-Many
TCGA.CI.6622	7	44407	159119219	45966	0.0042	NEUTRAL	NA	881	Too-Many
TCGA.CI.6623	7	44407	159119219	45999	0.3405	NEUTRAL	NA	881	Too-Many
TCGA.CK.4950	7	44407	159119219	45630	0.3006	NEUTRAL	NA	881	Too-Many
TCGA.CK.4951	7	44407	159119219	45854	0.0016	NEUTRAL	NA	881	Too-Many
TCGA.CK.5912	7	44407	159119219	45924	0.064	NEUTRAL	NA	881	Too-Many
TCGA.CK.5913	7	44407	159119219	46007	0.0112	NEUTRAL	NA	881	Too-Many
TCGA.CK.5915	7	44407	159119219	45971	0.1275	NEUTRAL	NA	881	Too-Many
TCGA.CK.5916	7	44407	159119219	45953	-0.0032	NEUTRAL	NA	881	Too-Many
TCGA.CK.6748	7	44407	159119219	45991	0.016	NEUTRAL	NA	881	Too-Many
TCGA.CK.6751	7	44407	159119219	45825	0.0139	NEUTRAL	NA	881	Too-Many
TCGA.CM.4743	7	44407	159119219	46040	0.017	NEUTRAL	NA	881	Too-Many
TCGA.CM.4746	7	44407	159119219	46031	0.0014	NEUTRAL	NA	881	Too-Many
TCGA.CM.4747	7	44407	159119219	46036	0.2965	NEUTRAL	NA	881	Too-Many
TCGA.CM.4748	7	44407	159119219	46041	0.0024	NEUTRAL	NA	881	Too-Many
TCGA.CM.5349	7	44407	159119219	46052	0	NEUTRAL	NA	881	Too-Many
TCGA.CM.5861	7	44407	159119219	45999	0.0027	NEUTRAL	NA	881	Too-Many
TCGA.CM.5863	7	44407	159119219	45984	0.1163	NEUTRAL	NA	881	Too-Many
TCGA.CM.6161	7	44407	159119219	45963	0.3172	NEUTRAL	NA	881	Too-Many
TCGA.CM.6162	7	44407	159119219	45881	0.0173	NEUTRAL	NA	881	Too-Many
TCGA.CM.6164	7	44407	159119219	45997	0.0275	NEUTRAL	NA	881	Too-Many
TCGA.CM.6166	7	44407	159119219	46067	0.0061	NEUTRAL	NA	881	Too-Many
TCGA.CM.6167	7	44407	159119219	46049	0.2809	NEUTRAL	NA	881	Too-Many
TCGA.CM.6171	7	44407	159119219	46069	0.0668	NEUTRAL	NA	881	Too-Many
TCGA.CM.6172	7	44407	159119219	46069	0.105	NEUTRAL	NA	881	Too-Many
TCGA.CM.6674	7	44407	159119219	45955	0.013	NEUTRAL	NA	881	Too-Many
TCGA.CM.6676	7	44407	159119219	45914	0.2946	NEUTRAL	NA	881	Too-Many
TCGA.CM.6677	7	44407	159119219	45885	0.2583	NEUTRAL	NA	881	Too-Many
TCGA.CM.6679	7	44407	159119219	45903	0.32125	NEUTRAL	NA	881	Too-Many
TCGA.CM.6680	7	44407	159119219	45991	0.0196	NEUTRAL	NA	881	Too-Many
TCGA.D5.5540	7	44407	159119219	46059	0.005	NEUTRAL	NA	881	Too-Many
TCGA.D5.6529	7	44407	159119219	46068	0.0172	NEUTRAL	NA	881	Too-Many
TCGA.D5.6530	7	44407	159119219	46061	0.015	NEUTRAL	NA	881	Too-Many
TCGA.D5.6532	7	44407	159119219	46029	-0.0023	NEUTRAL	NA	881	Too-Many
TCGA.D5.6540	7	44407	159119219	45975	0.0004	NEUTRAL	NA	881	Too-Many
TCGA.D5.6541	7	44407	159119219	46064	0.0102	NEUTRAL	NA	881	Too-Many
TCGA.D5.6920	7	44407	159119219	45953	0.005	NEUTRAL	NA	881	Too-Many
TCGA.D5.6922	7	44407	159119219	45959	0.2966	NEUTRAL	NA	881	Too-Many
TCGA.D5.6924	7	44407	159119219	45964	0.1882	NEUTRAL	NA	881	Too-Many
TCGA.D5.6927	7	44407	159119219	45974	0	NEUTRAL	NA	881	Too-Many
TCGA.D5.6928	7	44407	159119219	45968	-0.003	NEUTRAL	NA	881	Too-Many
TCGA.D5.6929	7	44407	159119219	45972	0.3127	NEUTRAL	NA	881	Too-Many
TCGA.DC.5337	7	44407	159119219	45886	0.0068	NEUTRAL	NA	881	Too-Many
TCGA.DC.5869	7	44407	159119219	45956	0.2417	NEUTRAL	NA	881	Too-Many
TCGA.DC.6158	7	44407	159119219	45915	0.2924	NEUTRAL	NA	881	Too-Many
TCGA.DM.A0X9	7	44407	159119219	46045	0	NEUTRAL	NA	881	Too-Many
TCGA.DM.A1D0	7	44407	159119219	45823	-0.003	NEUTRAL	NA	881	Too-Many
TCGA.DM.A1D7	7	44407	159119219	46058	0.1175	NEUTRAL	NA	881	Too-Many
TCGA.DM.A1D8	7	44407	159119219	45984	0.3356	NEUTRAL	NA	881	Too-Many
TCGA.DM.A280	7	44407	159119219	45938	0.2435	NEUTRAL	NA	881	Too-Many
TCGA.DM.A28A	7	44407	159119219	45971	-0.0353	NEUTRAL	NA	881	Too-Many
TCGA.DM.A28C	7	44407	159119219	46002	0.0097	NEUTRAL	NA	881	Too-Many
TCGA.DM.A28E	7	44407	159119219	45954	-0.0014	NEUTRAL	NA	881	Too-Many
TCGA.DM.A28G	7	44407	159119219	46008	0	NEUTRAL	NA	881	Too-Many
TCGA.DM.A28K	7	44407	159119219	45948	-0.003	NEUTRAL	NA	881	Too-Many
TCGA.DY.A1H8	7	44407	159119219	46054	0.0036	NEUTRAL	NA	881	Too-Many
TCGA.EI.6506	7	44407	159119219	45979	-0.0421	NEUTRAL	NA	881	Too-Many
TCGA.EI.6507	7	44407	159119219	46055	0.0017	NEUTRAL	NA	881	Too-Many
TCGA.EI.6509	7	44407	159119219	46071	0.0178	NEUTRAL	NA	881	Too-Many
TCGA.EI.6881	7	44407	159119219	45969	0.0151	NEUTRAL	NA	881	Too-Many
TCGA.EI.6882	7	44407	159119219	45968	-0.0067	NEUTRAL	NA	881	Too-Many
TCGA.EI.6884	7	44407	159119219	45934	0.1802	NEUTRAL	NA	881	Too-Many
TCGA.EI.6917	7	44407	159119219	45940	0.0038	NEUTRAL	NA	881	Too-Many
TCGA.EI.7002	7	44407	159119219	45965	0.3451	NEUTRAL	NA	881	Too-Many
TCGA.F4.6463	7	44407	159119219	46052	0.0013	NEUTRAL	NA	881	Too-Many
TCGA.F4.6569	7	44407	159119219	46084	0.2726	NEUTRAL	NA	881	Too-Many
TCGA.F4.6703	7	44407	159119219	45989	-0.0406	NEUTRAL	NA	881	Too-Many
TCGA.F4.6805	7	44407	159119219	45990	0.0084	NEUTRAL	NA	881	Too-Many
TCGA.F4.6806	7	44407	159119219	45874	0.0185	NEUTRAL	NA	881	Too-Many
TCGA.F4.6807	7	44407	159119219	45934	0.0022	NEUTRAL	NA	881	Too-Many
TCGA.F4.6808	7	44407	159119219	45977	0.372	NEUTRAL	NA	881	Too-Many
TCGA.F4.6809	7	44407	159119219	45972	0.0056	NEUTRAL	NA	881	Too-Many
TCGA.F4.6854	7	44407	159119219	45962	0.3616	NEUTRAL	NA	881	Too-Many
TCGA.F4.6855	7	44407	159119219	45944	0.3056	NEUTRAL	NA	881	Too-Many
TCGA.F4.6856	7	44407	159119219	45971	0.0009	NEUTRAL	NA	881	Too-Many
TCGA.F5.6571	7	44407	159119219	45983	0.0917	NEUTRAL	NA	881	Too-Many
TCGA.F5.6813	7	44407	159119219	46007	0.3278	NEUTRAL	NA	881	Too-Many
TCGA.F5.6814	7	44407	159119219	45968	0.0355	NEUTRAL	NA	881	Too-Many
TCGA.F5.6861	7	44407	159119219	45951	0.0099	NEUTRAL	NA	881	Too-Many
TCGA.F5.6864	7	44407	159119219	45970	0.343	NEUTRAL	NA	881	Too-Many
TCGA.G4.6295	7	44407	159119219	46071	0.0213	NEUTRAL	NA	881	Too-Many
TCGA.G4.6297	7	44407	159119219	46050	0.2354	NEUTRAL	NA	881	Too-Many
TCGA.G4.6302	7	44407	159119219	46056	0.0071	NEUTRAL	NA	881	Too-Many
TCGA.G4.6304	7	44407	159119219	45970	0.0067	NEUTRAL	NA	881	Too-Many
TCGA.G4.6307	7	44407	159119219	46066	0.2889	NEUTRAL	NA	881	Too-Many
TCGA.G4.6309	7	44407	159119219	45981	0.0015	NEUTRAL	NA	881	Too-Many
TCGA.G4.6314	7	44407	159119219	46064	0.2529	NEUTRAL	NA	881	Too-Many
TCGA.G4.6315	7	44407	159119219	46067	0.1064	NEUTRAL	NA	881	Too-Many
TCGA.G4.6321	7	44407	159119219	46061	0.0131	NEUTRAL	NA	881	Too-Many
TCGA.G4.6323	7	44407	159119219	46063	0.0825	NEUTRAL	NA	881	Too-Many
TCGA.G4.6586	7	44407	159119219	46076	0	NEUTRAL	NA	881	Too-Many
TCGA.G4.6588	7	44407	159119219	46078	0.0087	NEUTRAL	NA	881	Too-Many
TCGA.G4.6625	7	44407	159119219	46056	0.1572	NEUTRAL	NA	881	Too-Many
TCGA.G4.6628	7	44407	159119219	45966	-0.002	NEUTRAL	NA	881	Too-Many
TCGA.G5.6641	7	44407	159119219	45978	0.1576	NEUTRAL	NA	881	Too-Many
TCGA.NH.A50T	7	44407	159119219	45786	0.3483	NEUTRAL	NA	881	Too-Many
TCGA.NH.A50U	7	44407	159119219	46052	0.0255	NEUTRAL	NA	881	Too-Many
TCGA.NH.A6GB	7	44407	159119219	46045	0.2501	NEUTRAL	NA	881	Too-Many
TCGA.NH.A8F8	7	44407	159119219	46058	0.0165	NEUTRAL	NA	881	Too-Many
TCGA.QG.A5YV	7	44407	159119219	45731	0.0495	NEUTRAL	NA	881	Too-Many
TCGA.QG.A5YW	7	44407	159119219	45792	0.0253	NEUTRAL	NA	881	Too-Many
TCGA.QG.A5YX	7	44407	159119219	45668	-0.0054	NEUTRAL	NA	881	Too-Many
TCGA.AZ.6606	7	46238	1806722	235	0.0774	NEUTRAL	NA	21	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,GET4,GPER1,GPR146,INTS1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3821	7	46238	159119219	46012	0.0057	NEUTRAL	NA	881	Too-Many
TCGA.AA.A03J	7	46238	159119219	45149	0.2249	NEUTRAL	NA	881	Too-Many
TCGA.CK.6746	7	46238	159119219	45956	0.0062	NEUTRAL	NA	881	Too-Many
TCGA.F5.6702	7	46238	159119219	45879	0.19	NEUTRAL	NA	881	Too-Many
TCGA.AG.3902	7	53997	33119906	12458	0.0038	NEUTRAL	NA	184	Too-Many
TCGA.CA.6715	7	65253	65243595	20995	0.0058	NEUTRAL	NA	297	Too-Many
TCGA.CM.5344	7	65324	62653306	20732	0.3196	NEUTRAL	NA	286	Too-Many
TCGA.AG.3726	7	71275	38311097	14369	0.004	NEUTRAL	NA	203	Too-Many
TCGA.AA.3819	7	79262	38290713	14372	0.0057	NEUTRAL	NA	202	Too-Many
TCGA.AA.3977	7	183844	2227810	277	0.2666	NEUTRAL	NA	22	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.CK.5914.01A	7	193151	813646	33	-0.2509	NEUTRAL	NA	5	"DNAAF5,FAM20C,PDGFA,PRKAR1B,WI2-2373I1.2"
TCGA.A6.3808.01A	7	193151	882061	41	-0.175	NEUTRAL	NA	6	"DNAAF5,FAM20C,PDGFA,PRKAR1B,SUN1,WI2-2373I1.2"
TCGA.AA.3980.01A	7	193151	1578750	140	-0.195	NEUTRAL	NA	18	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,FAM20C,GET4,GPER1,GPR146,INTS1,MAFK,MICALL2,PDGFA,PRKAR1B,SUN1,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3509.01A	7	193151	5941213	525	-0.1873	NEUTRAL	NA	52	"ACTB,ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.AZ.4684.01A	7	193151	5944678	527	0.2261	NEUTRAL	NA	52	"ACTB,ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.DM.A28M.01A	7	193151	5949605	527	0.1729	NEUTRAL	NA	52	"ACTB,ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.AH.6549.01A	7	193151	33054295	1798	-0.02	NEUTRAL	NA	184	Too-Many
TCGA.CK.4948.01B	7	193151	81594847	3652	0.1761	NEUTRAL	NA	376	Too-Many
TCGA.AY.A54L.01A	7	193151	84751040	3749	0.3188	NEUTRAL	NA	380	Too-Many
TCGA.CM.4744.01A	7	193151	158936978	8509	0.2312	NEUTRAL	NA	881	Too-Many
TCGA.CM.6165.01A	7	193151	158936978	8524	0.1807	NEUTRAL	NA	881	Too-Many
TCGA.DM.A282.01A	7	193151	158936978	8479	-3.00E-04	NEUTRAL	NA	881	Too-Many
TCGA.AG.3909.01A	7	195537	878392	26	-0.1351	NEUTRAL	NA	6	"DNAAF5,FAM20C,PDGFA,PRKAR1B,SUN1,WI2-2373I1.2"
TCGA.AA.3930.01A	7	195537	895930	51	0.1278	NEUTRAL	NA	6	"DNAAF5,FAM20C,PDGFA,PRKAR1B,SUN1,WI2-2373I1.2"
TCGA.AF.3914.01A	7	195537	1536752	96	0.1211	NEUTRAL	NA	17	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,FAM20C,GET4,GPER1,GPR146,INTS1,MICALL2,PDGFA,PRKAR1B,SUN1,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AG.4009.01A	7	195537	1537997	86	0.1833	NEUTRAL	NA	17	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,FAM20C,GET4,GPER1,GPR146,INTS1,MICALL2,PDGFA,PRKAR1B,SUN1,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AG.3891.01A	7	195537	2284187	120	-0.091	NEUTRAL	NA	24	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,FTSJ2,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3862.01A	7	195537	2309178	171	-0.0609	NEUTRAL	NA	25	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,FTSJ2,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3939.01A	7	195537	4856838	375	-0.0396	NEUTRAL	NA	39	"ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FOXK1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,RADIL,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.A024.01A	7	195537	94054389	3782	0.021	NEUTRAL	NA	423	Too-Many
TCGA.AA.3861.01A	7	197090	1590406	118	-0.4996	NEUTRAL	NA	19	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,FAM20C,GET4,GPER1,GPR146,INTS1,MAFK,MICALL2,PDGFA,PRKAR1B,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3815.01A	7	197090	44605989	2233	-0.0591	NEUTRAL	NA	237	Too-Many
TCGA.AA.A02J.01A	7	208836	5691997	209	0.1459	NEUTRAL	NA	50	"ACTB,ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,PAPOLB,PDGFA,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.DC.6160.01A	7	288234	2666059	287	-0.2138	NEUTRAL	NA	31	"ADAP1,BRAT1,C7orf50,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.CK.4952.01A	7	288234	158629739	8504	-0.0879	NEUTRAL	NA	879	Too-Many
TCGA.AG.A01W.01A	7	290588	1904316	126	0.1041	NEUTRAL	NA	22	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FAM20C,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.A02F.01A	7	538119	1542490	44	-0.1813	NEUTRAL	NA	15	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,GET4,GPER1,GPR146,INTS1,MICALL2,PDGFA,PRKAR1B,SUN1,UNCX,ZFAND2A"
TCGA.AA.A01C.01A	7	538119	2274709	82	-0.4138	NEUTRAL	NA	21	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FTSJ2,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,ZFAND2A"
TCGA.AA.A029.01A	7	538119	2274709	65	-0.3152	NEUTRAL	NA	21	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FTSJ2,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,ZFAND2A"
TCGA.AG.A00C.01A	7	538119	5764905	312	0.1857	NEUTRAL	NA	48	"ACTB,ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,PAPOLB,PDGFA,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,WIPI2,ZFAND2A"
TCGA.AG.A011.01A	7	538119	6826502	421	0.144	NEUTRAL	NA	68	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AG.A01J.01A	7	538119	6836162	396	-0.1294	NEUTRAL	NA	68	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.A004.01A	7	538119	6840959	368	-0.0122	NEUTRAL	NA	69	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.A00O.01A	7	538119	6864063	411	-0.4386	NEUTRAL	NA	69	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.A017.01A	7	538119	6864063	400	0.1028	NEUTRAL	NA	69	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.A02H.01A	7	538119	6864063	406	-0.0334	NEUTRAL	NA	69	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AG.A023.01A	7	538119	6864063	422	-0.3616	NEUTRAL	NA	69	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AG.A025.01A	7	538119	7283113	462	-0.3574	NEUTRAL	NA	70	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AG.A01N.01A	7	538119	7421112	457	-0.083	NEUTRAL	NA	71	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AG.A008.01A	7	538119	38268341	1664	-0.2133	NEUTRAL	NA	200	Too-Many
TCGA.AG.A01L.01A	7	538119	44795772	1920	0.1832	NEUTRAL	NA	238	Too-Many
TCGA.AG.A016.01A	7	538119	56156497	2339	0.3701	NEUTRAL	NA	280	Too-Many
TCGA.AG.A015.01A	7	538119	73279294	2605	0.3171	NEUTRAL	NA	327	Too-Many
TCGA.AA.A01D.01A	7	538119	158935086	6998	-0.0871	NEUTRAL	NA	879	Too-Many
TCGA.AA.A02R.01A	7	538119	158935086	7031	-0.0795	NEUTRAL	NA	879	Too-Many
TCGA.AA.A02W.01A	7	538119	158935086	7272	0.0686	NEUTRAL	NA	879	Too-Many
TCGA.AG.A00H.01A	7	538119	158935086	7340	0.0362	NEUTRAL	NA	879	Too-Many
TCGA.AG.A02G.01A	7	538119	158935086	7395	0.178	NEUTRAL	NA	879	Too-Many
TCGA.AG.A02X.01A	7	538119	158935086	7445	0.1351	NEUTRAL	NA	879	Too-Many
TCGA.AA.A00A.01A	7	540008	925636	25	0.0873	NEUTRAL	NA	5	"DNAAF5,GET4,PDGFA,PRKAR1B,SUN1"
TCGA.AA.A01Q.01A	7	540008	930514	35	-0.2789	NEUTRAL	NA	5	"DNAAF5,GET4,PDGFA,PRKAR1B,SUN1"
TCGA.AG.3906.01A	7	540008	2279046	97	-0.0803	NEUTRAL	NA	21	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FTSJ2,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PDGFA,PRKAR1B,PSMG3,SUN1,TMEM184A,UNCX,ZFAND2A"
TCGA.AA.A01K.01A	7	540008	2606672	97	-0.4407	NEUTRAL	NA	29	"ADAP1,BRAT1,C7orf50,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FTSJ2,GET4,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,UNCX,ZFAND2A"
TCGA.AA.A00Q.01A	7	540008	6647569	358	0.3683	NEUTRAL	NA	65	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A"
TCGA.AA.A02E.01A	7	540008	6864063	416	-0.4075	NEUTRAL	NA	69	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AG.3611.01A	7	540008	23682503	616	0.3381	NEUTRAL	NA	123	Too-Many
TCGA.AA.A00D.01A	7	540008	24727020	696	0.2507	NEUTRAL	NA	127	Too-Many
TCGA.AA.A00J.01A	7	540008	27195854	764	0.1017	NEUTRAL	NA	145	Too-Many
TCGA.AA.A00K.01A	7	540008	55902067	1739	-0.009	NEUTRAL	NA	273	Too-Many
TCGA.AG.A032.01A	7	540708	11630037	494	0.2931	NEUTRAL	NA	80	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3966	7	863555	38290713	14265	0.0588	NEUTRAL	NA	197	Too-Many
TCGA.AA.3930.01A	7	897416	2188733	100	-0.2628	NEUTRAL	NA	17	"ADAP1,C7orf50,COX19,CYP2W1,ELFN1,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,PSMG3,SUN1,TMEM184A,UNCX,ZFAND2A"
TCGA.CK.5914.01A	7	916293	2985401	262	-0.3115	NEUTRAL	NA	29	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,EIF3B,ELFN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PSMG3,SNX8,TMEM184A,TTYH3,UNCX,ZFAND2A"
TCGA.AG.3909.01A	7	926150	1197725	22	-0.4503	NEUTRAL	NA	8	"ADAP1,C7orf50,COX19,CYP2W1,GET4,GPER1,GPR146,ZFAND2A"
TCGA.AA.A00A.01A	7	926150	2311433	46	-0.2939	NEUTRAL	NA	19	"ADAP1,C7orf50,COX19,CYP2W1,ELFN1,FTSJ2,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,NUDT1,PSMG3,SNX8,TMEM184A,UNCX,ZFAND2A"
TCGA.AA.A01Q.01A	7	974702	1062514	10	-0.0247	NEUTRAL	NA	4	"ADAP1,C7orf50,COX19,CYP2W1"
TCGA.AA.A010.01A	7	1015003	1062514	11	-0.1934	NEUTRAL	NA	3	"C7orf50,COX19,CYP2W1"
TCGA.AG.3909.01A	7	1273125	2740059	117	-0.0436	NEUTRAL	NA	19	"AMZ1,BRAT1,CHST12,EIF3B,ELFN1,FTSJ2,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PSMG3,SNX8,TMEM184A,TTYH3,UNCX"
TCGA.AA.A02K.01A	7	1479535	1594866	48	-0.0043	NEUTRAL	NA	4	"INTS1,MAFK,MICALL2,TMEM184A"
TCGA.AA.3967.01A	7	1488219	1594885	38	0.0198	NEUTRAL	NA	4	"INTS1,MAFK,MICALL2,TMEM184A"
TCGA.AA.A01Q.01A	7	1578750	6565817	347	-0.1804	NEUTRAL	NA	48	"ACTB,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,CARD11,CCZ1,CHST12,CYTH3,DAGLB,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GNA12,GRID2IP,GRIFIN,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MMD2,NUDT1,OCM,PAPOLB,PMS2,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,TMEM184A,TNRC18,TTYH3,USP42,WIPI2"
TCGA.AA.3980.01A	7	1579535	158827215	8237	0.1288	NEUTRAL	NA	864	Too-Many
TCGA.AA.3861.01A	7	1594885	5355535	250	0.0468	NEUTRAL	NA	28	"AMZ1,AP5Z1,BRAT1,CARD11,CHST12,EIF3B,ELFN1,FOXK1,FTSJ2,GNA12,GRIFIN,IQCE,LFNG,MAD1L1,MMD2,NUDT1,PAPOLB,PSMG3,RADIL,RBAK,RBAK-RBAKDN,SDK1,SLC29A4,SNX8,TMEM184A,TNRC18,TTYH3,WIPI2"
TCGA.AA.A02K.01A	7	1607284	6805294	484	0.3243	NEUTRAL	NA	51	"ACTB,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,CARD11,CCZ1,CHST12,CYTH3,DAGLB,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GNA12,GRID2IP,GRIFIN,IQCE,KDELR2,LFNG,MAD1L1,MMD2,NUDT1,OCM,PAPOLB,PMS2,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,TNRC18,TTYH3,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.F4.6461	7	1720341	52500627	18977	0.0157	NEUTRAL	NA	248	Too-Many
TCGA.AA.A010.01A	7	1732905	2317708	40	-0.4141	NEUTRAL	NA	5	"ELFN1,FTSJ2,MAD1L1,NUDT1,SNX8"
TCGA.AM.5820	7	1806722	1835893	12	0.158	NEUTRAL	NA	0	None
TCGA.AZ.6606	7	1819138	12443041	4002	0.01	NEUTRAL	NA	63	"ACTB,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,CYTH3,DAGLB,EIF2AK1,EIF3B,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GLCCI1,GNA12,GRID2IP,GRIFIN,ICA1,IQCE,KDELR2,LFNG,MAD1L1,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PHF14,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,THSD7A,TMEM106B,TNRC18,TTYH3,UMAD1,USP42,VWDE,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AF.3914.01A	7	1855657	2418998	48	0.3348	NEUTRAL	NA	5	"EIF3B,FTSJ2,MAD1L1,NUDT1,SNX8"
TCGA.DY.A1DG	7	1962162	152922247	43596	0.0134	NEUTRAL	NA	840	Too-Many
TCGA.AA.A02F.01A	7	1997210	6864063	297	-0.2979	NEUTRAL	NA	50	"ACTB,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,CARD11,CCZ1,CCZ1B,CHST12,CYTH3,DAGLB,EIF2AK1,EIF3B,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GNA12,GRID2IP,GRIFIN,IQCE,KDELR2,LFNG,MAD1L1,MMD2,NUDT1,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,TNRC18,TTYH3,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.A6.6137	7	2032190	159119219	45794	-0.0026	NEUTRAL	NA	860	Too-Many
TCGA.QG.A5Z2	7	2161098	156261601	44608	0.0086	NEUTRAL	NA	849	Too-Many
TCGA.AA.3977	7	2228884	2237321	9	-0.3003	NEUTRAL	NA	1	MAD1L1
TCGA.AA.3977	7	2249893	13442275	4246	0.0076	NEUTRAL	NA	65	"ACTB,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,CYTH3,DAGLB,EIF2AK1,EIF3B,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GLCCI1,GNA12,GRID2IP,GRIFIN,ICA1,IQCE,KDELR2,LFNG,MAD1L1,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PHF14,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,THSD7A,TMEM106B,TNRC18,TTYH3,UMAD1,USP42,VWDE,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3930.01A	7	2252779	5372226	259	0.1839	NEUTRAL	NA	25	"AMZ1,AP5Z1,BRAT1,CARD11,CHST12,EIF3B,FOXK1,FTSJ2,GNA12,GRIFIN,IQCE,LFNG,MAD1L1,MMD2,NUDT1,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,SDK1,SLC29A4,SNX8,TNRC18,TTYH3,WIPI2"
TCGA.AG.4009.01A	7	2264996	2402635	19	-0.1739	NEUTRAL	NA	5	"EIF3B,FTSJ2,MAD1L1,NUDT1,SNX8"
TCGA.AG.3906.01A	7	2284187	2303884	5	0.3594	NEUTRAL	NA	2	"NUDT1,SNX8"
TCGA.AA.A01C.01A	7	2284187	5751345	202	-0.2347	NEUTRAL	NA	27	"ACTB,AMZ1,AP5Z1,BRAT1,CARD11,CHST12,EIF3B,FBXL18,FOXK1,FSCN1,GNA12,GRIFIN,IQCE,LFNG,MMD2,NUDT1,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,SNX8,TNRC18,TTYH3,WIPI2"
TCGA.AG.3891.01A	7	2289445	2314697	8	0.2605	NEUTRAL	NA	2	"NUDT1,SNX8"
TCGA.AA.A029.01A	7	2290417	6864063	329	-0.1719	NEUTRAL	NA	48	"ACTB,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,CARD11,CCZ1,CCZ1B,CHST12,CYTH3,DAGLB,EIF2AK1,EIF3B,FAM220A,FBXL18,FOXK1,FSCN1,GNA12,GRID2IP,GRIFIN,IQCE,KDELR2,LFNG,MMD2,NUDT1,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,TNRC18,TTYH3,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.A00A.01A	7	2314697	73731826	1965	0.0604	NEUTRAL	NA	311	Too-Many
TCGA.AG.4009.01A	7	2403220	2577661	19	0.3579	NEUTRAL	NA	5	"BRAT1,CHST12,EIF3B,GRIFIN,LFNG"
TCGA.AG.3906.01A	7	2411351	2472227	9	0.0234	NEUTRAL	NA	2	"CHST12,EIF3B"
TCGA.AG.3891.01A	7	2418727	2611786	17	0.0122	NEUTRAL	NA	6	"BRAT1,CHST12,EIF3B,GRIFIN,IQCE,LFNG"
TCGA.AF.3914.01A	7	2472227	2612990	21	-0.3627	NEUTRAL	NA	5	"BRAT1,CHST12,GRIFIN,IQCE,LFNG"
TCGA.AG.A01W.01A	7	2481253	5535499	242	0.3145	NEUTRAL	NA	20	"AMZ1,AP5Z1,BRAT1,CARD11,FBXL18,FOXK1,GNA12,GRIFIN,IQCE,LFNG,MMD2,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,SDK1,SLC29A4,TNRC18,TTYH3,WIPI2"
TCGA.AG.4009.01A	7	2579126	2629529	17	-0.5086	NEUTRAL	NA	2	"BRAT1,IQCE"
TCGA.A6.3808.01A	7	2584495	2834520	50	-0.4654	NEUTRAL	NA	5	"AMZ1,BRAT1,GNA12,IQCE,TTYH3"
TCGA.AA.A01K.01A	7	2612990	6439692	231	-0.2298	NEUTRAL	NA	32	"ACTB,AIMP2,AMZ1,ANKRD61,AP5Z1,CARD11,CCZ1,CYTH3,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,GNA12,IQCE,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,TTYH3,USP42,WIPI2"
TCGA.AF.3914.01A	7	2625831	2698520	17	-0.2584	NEUTRAL	NA	2	"IQCE,TTYH3"
TCGA.AG.4009.01A	7	2632614	2748687	18	0.1671	NEUTRAL	NA	3	"AMZ1,IQCE,TTYH3"
TCGA.AG.3891.01A	7	2644466	4917195	111	-0.1333	NEUTRAL	NA	10	"AMZ1,AP5Z1,CARD11,FOXK1,GNA12,IQCE,PAPOLB,RADIL,SDK1,TTYH3"
TCGA.DC.6160.01A	7	2667767	158629739	8217	0.0744	NEUTRAL	NA	848	Too-Many
TCGA.AG.3906.01A	7	2689497	5267695	119	-0.1634	NEUTRAL	NA	13	"AMZ1,AP5Z1,CARD11,FOXK1,GNA12,MMD2,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,SDK1,TTYH3,WIPI2"
TCGA.A6.5665	7	2694342	3025150	110	-0.3752	NEUTRAL	NA	4	"AMZ1,CARD11,GNA12,TTYH3"
TCGA.AG.3909.01A	7	2748175	4201372	64	0.2802	NEUTRAL	NA	4	"AMZ1,CARD11,GNA12,SDK1"
TCGA.DC.6155	7	2933194	6447040	1132	0.1943	NEUTRAL	NA	28	"ACTB,AIMP2,ANKRD61,AP5Z1,CARD11,CCZ1,CYTH3,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,USP42,WIPI2"
TCGA.AA.3967.01A	7	2962247	4830749	79	0.3253	NEUTRAL	NA	4	"AP5Z1,CARD11,FOXK1,SDK1"
TCGA.A6.5665	7	3034037	4208565	569	-0.3883	NEUTRAL	NA	2	"CARD11,SDK1"
TCGA.A6.2672	7	3034037	7058671	1180	-0.4386	NEUTRAL	NA	37	"ACTB,AIMP2,ANKRD61,AP5Z1,C7orf26,CARD11,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.A6.3808.01A	7	3179799	5925618	196	-0.4001	NEUTRAL	NA	16	"ACTB,AP5Z1,FBXL18,FOXK1,FSCN1,MMD2,OCM,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,RNF216,SDK1,SLC29A4,TNRC18,WIPI2"
TCGA.AG.3727	7	3211015	38290713	13713	0.0022	NEUTRAL	NA	167	Too-Many
TCGA.AA.3811	7	3292509	4136968	365	0.3214	NEUTRAL	NA	1	SDK1
TCGA.AA.3941	7	3334596	3350566	12	-0.3723	NEUTRAL	NA	1	SDK1
TCGA.AA.3850	7	3334596	3509968	80	-0.06375	NEUTRAL	NA	1	SDK1
TCGA.AA.3530	7	3344016	3976694	279	-0.0383	NEUTRAL	NA	1	SDK1
TCGA.AA.3844	7	3344016	3976694	279	0.3288	NEUTRAL	NA	1	SDK1
TCGA.AA.3850	7	3514249	3723266	83	0.36165	NEUTRAL	NA	1	SDK1
TCGA.CM.6678	7	3626759	159119219	45098	0.2642	NEUTRAL	NA	846	Too-Many
TCGA.D5.7000	7	3626759	159119219	45029	0.3652	NEUTRAL	NA	846	Too-Many
TCGA.CK.5914.01A	7	3678595	4917195	83	-0.1304	NEUTRAL	NA	5	"AP5Z1,FOXK1,PAPOLB,RADIL,SDK1"
TCGA.AA.3850	7	3727598	3882392	71	-0.02825	NEUTRAL	NA	1	SDK1
TCGA.AA.3488	7	3886812	3954563	35	-0.008	NEUTRAL	NA	1	SDK1
TCGA.AA.3518	7	3931745	38290713	13362	-0.001	NEUTRAL	NA	167	Too-Many
TCGA.AA.3488	7	3959163	37790894	13158	0.3332	NEUTRAL	NA	163	Too-Many
TCGA.AA.3530	7	3980562	7040906	718	0.2906	NEUTRAL	NA	36	"ACTB,AIMP2,ANKRD61,AP5Z1,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.A00N.01A	7	3990502	4026771	10	-0.3676	NEUTRAL	NA	1	SDK1
TCGA.AF.2692	7	4167335	6965894	635	-0.3403	NEUTRAL	NA	36	"ACTB,AIMP2,ANKRD61,AP5Z1,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.A00N.01A	7	4201372	4917195	53	-0.3446	NEUTRAL	NA	5	"AP5Z1,FOXK1,PAPOLB,RADIL,SDK1"
TCGA.AG.3909.01A	7	4213817	4917195	37	-0.2624	NEUTRAL	NA	5	"AP5Z1,FOXK1,PAPOLB,RADIL,SDK1"
TCGA.AA.3856	7	4286301	4308776	8	-0.3732	NEUTRAL	NA	1	SDK1
TCGA.AA.3856	7	4308984	38290713	13210	0.2447	NEUTRAL	NA	166	Too-Many
TCGA.AM.5820	7	4312944	4743714	159	0.2931	NEUTRAL	NA	1	FOXK1
TCGA.AA.3844	7	4394804	4399951	6	-0.1689	NEUTRAL	NA	0	None
TCGA.AG.A036.01A	7	4789798	4797235	11	0.164	NEUTRAL	NA	1	FOXK1
TCGA.AG.4009.01A	7	4800664	4917195	20	0.0509	NEUTRAL	NA	4	"AP5Z1,FOXK1,PAPOLB,RADIL"
TCGA.AA.A010.01A	7	4820768	4856838	22	-0.3803	NEUTRAL	NA	2	"AP5Z1,RADIL"
TCGA.AA.3939.01A	7	4862016	5922072	108	0.3044	NEUTRAL	NA	13	"ACTB,FBXL18,FSCN1,MMD2,OCM,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,RNF216,SLC29A4,TNRC18,WIPI2"
TCGA.AA.A010.01A	7	4949351	5270414	28	0.3023	NEUTRAL	NA	4	"MMD2,RBAK,RBAK-RBAKDN,WIPI2"
TCGA.AA.A00N.01A	7	4998564	5760615	90	-0.3722	NEUTRAL	NA	10	"ACTB,FBXL18,FSCN1,MMD2,RBAK,RBAK-RBAKDN,RNF216,SLC29A4,TNRC18,WIPI2"
TCGA.CK.5914.01A	7	5024564	6000291	123	-0.0332	NEUTRAL	NA	13	"ACTB,CCZ1,FBXL18,FSCN1,OCM,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SLC29A4,TNRC18,WIPI2"
TCGA.AG.3909.01A	7	5024564	6513773	186	0.12	NEUTRAL	NA	23	"ACTB,AIMP2,ANKRD61,CCZ1,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FSCN1,KDELR2,OCM,PMS2,RAC1,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SLC29A4,TNRC18,USP42,WIPI2"
TCGA.AG.3906.01A	7	5269192	6089512	111	0.2798	NEUTRAL	NA	15	"ACTB,AIMP2,ANKRD61,CCZ1,EIF2AK1,FBXL18,FSCN1,OCM,PMS2,RNF216,RSPH10B,RSPH10B2,SLC29A4,TNRC18,WIPI2"
TCGA.AG.4009.01A	7	5327399	5632939	38	-0.0679	NEUTRAL	NA	5	"ACTB,FBXL18,FSCN1,SLC29A4,TNRC18"
TCGA.AA.A00L.01A	7	5330718	5568653	8	0.3403	NEUTRAL	NA	4	"ACTB,FBXL18,SLC29A4,TNRC18"
TCGA.AA.A010.01A	7	5338619	5385186	17	-0.2377	NEUTRAL	NA	2	"SLC29A4,TNRC18"
TCGA.AG.A01W.01A	7	5609378	5736841	15	-0.0769	NEUTRAL	NA	2	"FSCN1,RNF216"
TCGA.AA.A010.01A	7	5632540	6098548	85	0.325	NEUTRAL	NA	10	"AIMP2,ANKRD61,CCZ1,EIF2AK1,FSCN1,OCM,PMS2,RNF216,RSPH10B,RSPH10B2"
TCGA.AF.3914.01A	7	5644865	26903919	846	0.347	NEUTRAL	NA	92	"ABCB5,AGMO,AGR2,AGR3,AHR,AIMP2,ANKMY2,ANKRD61,ARL4A,BZW2,C1GALT1,C7orf26,C7orf31,C7orf71,CBX3,CCDC126,CCZ1,CCZ1B,CDCA7L,COL28A1,CYCS,CYTH3,DAGLB,DFNA5,DGKB,DNAH11,EIF2AK1,ETV1,FAM126A,FAM220A,FAM221A,FERD3L,FSCN1,GLCCI1,GPNMB,GRID2IP,HDAC9,HNRNPA2B1,ICA1,IGF2BP3,IL6,ISPD,ITGB8,KDELR2,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MIOS,MPP6,NDUFA4,NFE2L3,NPVF,NPY,NUPL2,NXPH1,OCM,OSBPL3,PHF14,PMS2,PRPS1L1,RAC1,RAPGEF5,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SKAP2,SNX10,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,UMAD1,USP42,VWDE,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.A02J.01A	7	5754647	99708712	3658	0.3244	NEUTRAL	NA	434	Too-Many
TCGA.AG.A01W.01A	7	5767118	5934307	19	-0.2213	NEUTRAL	NA	2	"OCM,RNF216"
TCGA.AA.A00N.01A	7	5958417	6000291	14	-0.2128	NEUTRAL	NA	3	"CCZ1,RSPH10B,RSPH10B2"
TCGA.AG.A01W.01A	7	5966812	6003436	14	-0.3359	NEUTRAL	NA	2	"RSPH10B,RSPH10B2"
TCGA.AZ.4684.01A	7	5982918	6439692	77	-0.1905	NEUTRAL	NA	10	"AIMP2,ANKRD61,CYTH3,EIF2AK1,FAM220A,PMS2,RAC1,RSPH10B,RSPH10B2,USP42"
TCGA.AG.A01W.01A	7	6005216	6153845	36	0.0666	NEUTRAL	NA	7	"AIMP2,ANKRD61,EIF2AK1,PMS2,RSPH10B,RSPH10B2,USP42"
TCGA.DM.A28M.01A	7	6005218	6798652	135	0.1063	NEUTRAL	NA	18	"AIMP2,ANKRD61,C7orf26,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,PMS2,RAC1,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.CK.5914.01A	7	6022403	6086575	29	0.1272	NEUTRAL	NA	4	"AIMP2,ANKRD61,EIF2AK1,PMS2"
TCGA.AA.3939.01A	7	6029413	6836162	128	0.178	NEUTRAL	NA	18	"AIMP2,ANKRD61,C7orf26,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,PMS2,RAC1,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.A00N.01A	7	6048543	6084143	18	-0.0679	NEUTRAL	NA	4	"AIMP2,ANKRD61,EIF2AK1,PMS2"
TCGA.A6.3808.01A	7	6048543	6797327	120	-0.3881	NEUTRAL	NA	18	"AIMP2,ANKRD61,C7orf26,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,PMS2,RAC1,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.CK.5914.01A	7	6088360	7273910	125	-0.3622	NEUTRAL	NA	17	"C1GALT1,C7orf26,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,RAC1,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.4009.01A	7	6089512	6185728	13	0.1559	NEUTRAL	NA	2	"EIF2AK1,USP42"
TCGA.AA.3861.01A	7	6156389	6797327	89	0.0433	NEUTRAL	NA	14	"C7orf26,CYTH3,DAGLB,FAM220A,GRID2IP,KDELR2,RAC1,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.A01W.01A	7	6179762	6763862	71	0.1128	NEUTRAL	NA	12	"C7orf26,CYTH3,DAGLB,FAM220A,GRID2IP,KDELR2,RAC1,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.4009.01A	7	6187318	6205145	8	-0.3231	NEUTRAL	NA	2	"CYTH3,USP42"
TCGA.AA.A010.01A	7	6210119	6369996	10	-0.3542	NEUTRAL	NA	2	"CYTH3,FAM220A"
TCGA.BM.6198	7	6423345	6448762	16	0.00655	NEUTRAL	NA	2	"DAGLB,RAC1"
TCGA.AZ.4684.01A	7	6441457	6862878	79	0.2437	NEUTRAL	NA	12	"C7orf26,CCZ1B,DAGLB,GRID2IP,KDELR2,RAC1,RSPH10B,RSPH10B2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3509.01A	7	6441457	6864063	81	-0.2447	NEUTRAL	NA	12	"C7orf26,CCZ1B,DAGLB,GRID2IP,KDELR2,RAC1,RSPH10B,RSPH10B2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.DC.6155	7	6448531	6500781	11	-0.458	NEUTRAL	NA	2	"DAGLB,KDELR2"
TCGA.AA.A010.01A	7	6485537	6550490	21	-0.4672	NEUTRAL	NA	3	"DAGLB,GRID2IP,KDELR2"
TCGA.DC.6155	7	6505346	7451397	293	0.3298	NEUTRAL	NA	12	"C1GALT1,C7orf26,CCZ1B,COL28A1,GRID2IP,KDELR2,RSPH10B,RSPH10B2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.4009.01A	7	6621178	6744697	14	-0.3211	NEUTRAL	NA	5	"C7orf26,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.3906.01A	7	6730442	6861855	29	0.2748	NEUTRAL	NA	4	"CCZ1B,RSPH10B,RSPH10B2,ZNF12"
TCGA.AG.A01W.01A	7	6765178	6830218	22	-0.4843	NEUTRAL	NA	2	"RSPH10B,RSPH10B2"
TCGA.AA.3844	7	6779269	7786414	380	0.3692	NEUTRAL	NA	8	"C1GALT1,CCZ1B,COL28A1,MIOS,RPA3,RSPH10B,RSPH10B2,UMAD1"
TCGA.AA.A010.01A	7	6797327	15405730	251	0.0971	NEUTRAL	NA	21	"AGMO,ARL4A,C1GALT1,CCZ1B,COL28A1,DGKB,ETV1,GLCCI1,ICA1,MIOS,NDUFA4,NXPH1,PHF14,RPA3,RSPH10B,RSPH10B2,SCIN,THSD7A,TMEM106B,UMAD1,VWDE"
TCGA.AA.A02K.01A	7	6820390	30536657	880	0.2357	NEUTRAL	NA	100	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,C7orf31,C7orf71,CBX3,CCDC126,CCZ1B,CDCA7L,CHN2,COL28A1,CPVL,CREB5,CYCS,DFNA5,DGKB,DNAH11,ETV1,EVX1,FAM126A,FAM221A,FERD3L,FKBP14,GGCT,GLCCI1,GPNMB,HDAC9,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,ICA1,IGF2BP3,IL6,ISPD,ITGB8,JAZF1,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MIOS,MPP6,MTURN,NDUFA4,NFE2L3,NOD1,NPVF,NPY,NUPL2,NXPH1,OSBPL3,PHF14,PLEKHA8,PRPS1L1,PRR15,RAPGEF5,RPA3,RSPH10B,RSPH10B2,SCIN,SCRN1,SKAP2,SNX10,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,TAX1BP1,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TRIL,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE,WIPF3,ZNRF2"
TCGA.AG.A01J.01A	7	6837953	50673971	1747	0.3408	NEUTRAL	NA	199	Too-Many
TCGA.AA.A004.01A	7	6844540	55270159	1762	0.3214	NEUTRAL	NA	202	Too-Many
TCGA.AG.A011.01A	7	6845555	158935086	6926	0.0211	NEUTRAL	NA	811	Too-Many
TCGA.DM.A28M.01A	7	6854369	17349558	306	0.3519	NEUTRAL	NA	29	"AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,CCZ1B,COL28A1,DGKB,ETV1,GLCCI1,ICA1,ISPD,LRRC72,MEOX2,MIOS,NDUFA4,NXPH1,PHF14,RPA3,SCIN,SOSTDC1,THSD7A,TMEM106B,TSPAN13,UMAD1,VWDE"
TCGA.AA.A01Q.01A	7	6862878	7678652	9	-0.1748	NEUTRAL	NA	5	"C1GALT1,CCZ1B,COL28A1,MIOS,RPA3"
TCGA.AG.3906.01A	7	6862878	15405730	185	-0.1256	NEUTRAL	NA	19	"AGMO,ARL4A,C1GALT1,CCZ1B,COL28A1,DGKB,ETV1,GLCCI1,ICA1,MIOS,NDUFA4,NXPH1,PHF14,RPA3,SCIN,THSD7A,TMEM106B,UMAD1,VWDE"
TCGA.AG.A00Y.01A	7	6862878	55902067	1862	0.0694	NEUTRAL	NA	205	Too-Many
TCGA.A6.5665	7	6990890	55229014	18460	0.0847	NEUTRAL	NA	201	Too-Many
TCGA.AF.2692	7	6990890	72858482	21208	0.0518	NEUTRAL	NA	246	Too-Many
TCGA.A6.6782	7	6991240	7040906	5	-0.4358	NEUTRAL	NA	0	None
TCGA.AA.3982	7	7043483	8364215	661	0.1934	NEUTRAL	NA	7	"C1GALT1,COL28A1,GLCCI1,ICA1,MIOS,RPA3,UMAD1"
TCGA.AA.3867	7	7043483	17074775	4387	0.0212	NEUTRAL	NA	27	"AGMO,AGR2,AGR3,ANKMY2,ARL4A,BZW2,C1GALT1,COL28A1,DGKB,ETV1,GLCCI1,ICA1,ISPD,LRRC72,MEOX2,MIOS,NDUFA4,NXPH1,PHF14,RPA3,SCIN,SOSTDC1,THSD7A,TMEM106B,TSPAN13,UMAD1,VWDE"
TCGA.A6.6782	7	7043483	57435576	18814	0.3734	NEUTRAL	NA	214	Too-Many
TCGA.AA.3530	7	7043483	62393417	18936	-0.0037	NEUTRAL	NA	215	Too-Many
TCGA.CL.4957	7	7057829	12506731	2538	0.0849	NEUTRAL	NA	13	"C1GALT1,COL28A1,GLCCI1,ICA1,MIOS,NDUFA4,NXPH1,PHF14,RPA3,THSD7A,TMEM106B,UMAD1,VWDE"
TCGA.A6.5661	7	7060086	54186166	18073	0.0826	NEUTRAL	NA	198	Too-Many
TCGA.A6.2672	7	7060086	55245506	18418	0.0849	NEUTRAL	NA	201	Too-Many
TCGA.AA.3850	7	7060949	8132005	529	-0.19115	NEUTRAL	NA	6	"C1GALT1,COL28A1,GLCCI1,MIOS,RPA3,UMAD1"
TCGA.AA.3811	7	7064202	8370731	651	0.3287	NEUTRAL	NA	7	"C1GALT1,COL28A1,GLCCI1,ICA1,MIOS,RPA3,UMAD1"
TCGA.AA.3941	7	7245267	8129727	449	0.3725	NEUTRAL	NA	6	"C1GALT1,COL28A1,GLCCI1,MIOS,RPA3,UMAD1"
TCGA.AG.A00C.01A	7	7273910	16793527	227	-0.1233	NEUTRAL	NA	25	"AGMO,ANKMY2,ARL4A,BZW2,C1GALT1,COL28A1,DGKB,ETV1,GLCCI1,ICA1,ISPD,LRRC72,MEOX2,MIOS,NDUFA4,NXPH1,PHF14,RPA3,SCIN,SOSTDC1,THSD7A,TMEM106B,TSPAN13,UMAD1,VWDE"
TCGA.AA.A01C.01A	7	7273910	17854428	260	-0.0508	NEUTRAL	NA	29	"AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,COL28A1,DGKB,ETV1,GLCCI1,ICA1,ISPD,LRRC72,MEOX2,MIOS,NDUFA4,NXPH1,PHF14,RPA3,SCIN,SNX13,SOSTDC1,THSD7A,TMEM106B,TSPAN13,UMAD1,VWDE"
TCGA.AG.3891.01A	7	7273910	25181809	634	-0.1916	NEUTRAL	NA	62	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,C7orf31,CCDC126,CDCA7L,COL28A1,CYCS,DFNA5,DGKB,DNAH11,ETV1,FAM126A,FAM221A,FERD3L,GLCCI1,GPNMB,HDAC9,ICA1,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MIOS,MPP6,NDUFA4,NPY,NUPL2,NXPH1,OSBPL3,PHF14,PRPS1L1,RAPGEF5,RPA3,SCIN,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE"
TCGA.AA.3930.01A	7	7273910	26217512	731	-0.0359	NEUTRAL	NA	64	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,C7orf31,CCDC126,CDCA7L,COL28A1,CYCS,DFNA5,DGKB,DNAH11,ETV1,FAM126A,FAM221A,FERD3L,GLCCI1,GPNMB,HDAC9,ICA1,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MIOS,MPP6,NDUFA4,NFE2L3,NPVF,NPY,NUPL2,NXPH1,OSBPL3,PHF14,PRPS1L1,RAPGEF5,RPA3,SCIN,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE"
TCGA.A6.3808.01A	7	7273910	34979753	1150	0.3568	NEUTRAL	NA	118	Too-Many
TCGA.AA.A02E.01A	7	7273910	44044737	1350	0.1781	NEUTRAL	NA	154	Too-Many
TCGA.AA.A01K.01A	7	7273910	44610305	1416	0.1849	NEUTRAL	NA	166	Too-Many
TCGA.AA.A02F.01A	7	7273910	50367216	1632	0.1452	NEUTRAL	NA	193	Too-Many
TCGA.AA.A00O.01A	7	7273910	50444199	1692	0.0019	NEUTRAL	NA	193	Too-Many
TCGA.AA.3939.01A	7	7273910	92100491	3386	0.0676	NEUTRAL	NA	338	Too-Many
TCGA.AG.A023.01A	7	7273910	92210773	3038	-0.014	NEUTRAL	NA	341	Too-Many
TCGA.AA.A01I.01A	7	7273910	158534242	6858	-0.1365	NEUTRAL	NA	808	Too-Many
TCGA.AA.3967.01A	7	7283113	7516681	21	0.2952	NEUTRAL	NA	2	"C1GALT1,COL28A1"
TCGA.AA.3861.01A	7	7283113	34980309	1170	0.0975	NEUTRAL	NA	118	Too-Many
TCGA.AG.A01W.01A	7	7376840	7425984	7	0.2139	NEUTRAL	NA	1	COL28A1
TCGA.AG.A025.01A	7	7398213	74148197	2318	-0.0408	NEUTRAL	NA	265	Too-Many
TCGA.AG.A014.01A	7	7421112	8167476	49	0.2026	NEUTRAL	NA	6	"COL28A1,GLCCI1,ICA1,MIOS,RPA3,UMAD1"
TCGA.DC.6155	7	7454162	159119219	43907	0.0182	NEUTRAL	NA	809	Too-Many
TCGA.AA.A00N.01A	7	7483997	7495611	4	-0.0161	NEUTRAL	NA	1	COL28A1
TCGA.CK.5914.01A	7	7491913	8110504	39	0.2593	NEUTRAL	NA	5	"COL28A1,GLCCI1,MIOS,RPA3,UMAD1"
TCGA.AG.A01W.01A	7	7513195	7538897	9	0.1008	NEUTRAL	NA	1	COL28A1
TCGA.AG.3605.01A	7	7612060	154988572	122	0.1293	NEUTRAL	NA	791	Too-Many
TCGA.AA.3967.01A	7	7613691	8110504	18	0.2967	NEUTRAL	NA	4	"GLCCI1,MIOS,RPA3,UMAD1"
TCGA.AA.A01Q.01A	7	7679913	8275461	21	0.2548	NEUTRAL	NA	4	"GLCCI1,ICA1,RPA3,UMAD1"
TCGA.AA.3844	7	7798216	8489910	353	0.3479	NEUTRAL	NA	4	"GLCCI1,ICA1,NXPH1,UMAD1"
TCGA.AA.3850	7	8132251	8252260	79	0.28675	NEUTRAL	NA	1	ICA1
TCGA.AA.3941	7	8261970	8272691	14	0.1919	NEUTRAL	NA	1	ICA1
TCGA.AA.3850	7	8267874	8364215	38	0.12805	NEUTRAL	NA	1	ICA1
TCGA.AA.3850	7	8365571	8395301	14	-0.36565	NEUTRAL	NA	0	None
TCGA.AA.3941	7	8365571	8567003	130	-0.0608	NEUTRAL	NA	1	NXPH1
TCGA.AA.3982	7	8365571	20689494	5147	-0.1388	NEUTRAL	NA	31	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,DGKB,ETV1,FERD3L,HDAC9,ISPD,ITGB8,LRRC72,MACC1,MEOX2,NDUFA4,NXPH1,PHF14,PRPS1L1,SCIN,SNX13,SOSTDC1,THSD7A,TMEM106B,TMEM196,TSPAN13,TWIST1,TWISTNB,VWDE"
TCGA.AA.3811	7	8375192	13462619	2207	-0.0146	NEUTRAL	NA	8	"ARL4A,NDUFA4,NXPH1,PHF14,SCIN,THSD7A,TMEM106B,VWDE"
TCGA.AA.3850	7	8412650	8489845	40	-0.08295	NEUTRAL	NA	1	NXPH1
TCGA.CK.5914.01A	7	8475274	11030292	10	-0.5016	NEUTRAL	NA	3	"NDUFA4,NXPH1,PHF14"
TCGA.AG.3909.01A	7	8475274	11053357	11	-0.3991	NEUTRAL	NA	3	"NDUFA4,NXPH1,PHF14"
TCGA.AA.3844	7	8492306	11937872	1542	0.0263	NEUTRAL	NA	4	"NDUFA4,NXPH1,PHF14,THSD7A"
TCGA.AA.3941	7	8613343	8797736	88	0.1417	NEUTRAL	NA	1	NXPH1
TCGA.AA.3850	7	8673163	8797736	68	-0.22435	NEUTRAL	NA	1	NXPH1
TCGA.AA.3941	7	8800711	9775746	450	-0.327	NEUTRAL	NA	0	None
TCGA.AA.3681	7	9019072	9925154	388	0.0574	NEUTRAL	NA	0	None
TCGA.AA.3495	7	9127172	11773516	1095	0.3008	NEUTRAL	NA	3	"NDUFA4,PHF14,THSD7A"
TCGA.AD.6965	7	9771598	159119219	42887	0.037	NEUTRAL	NA	802	Too-Many
TCGA.AA.3941	7	9816021	9868408	15	-0.0308	NEUTRAL	NA	0	None
TCGA.AA.3941	7	9878026	10064733	69	-0.115	NEUTRAL	NA	0	None
TCGA.AA.3681	7	9925997	159119219	42923	0.3281	NEUTRAL	NA	802	Too-Many
TCGA.AA.3941	7	10083888	10124330	20	0.0188	NEUTRAL	NA	0	None
TCGA.AA.3679	7	10118947	10122251	5	-0.4519	NEUTRAL	NA	0	None
TCGA.AA.3941	7	10143158	11712489	643	0.0274	NEUTRAL	NA	3	"NDUFA4,PHF14,THSD7A"
TCGA.AA.3850	7	10185971	11740482	632	-0.45135	NEUTRAL	NA	3	"NDUFA4,PHF14,THSD7A"
TCGA.G4.6311	7	10794992	10806107	7	-0.4647	NEUTRAL	NA	0	None
TCGA.G4.6311	7	10807684	13582793	1209	0.2917	NEUTRAL	NA	7	"ARL4A,NDUFA4,PHF14,SCIN,THSD7A,TMEM106B,VWDE"
TCGA.AA.A01Q.01A	7	10973230	15584350	32	-0.2993	NEUTRAL	NA	10	"AGMO,ARL4A,DGKB,ETV1,NDUFA4,PHF14,SCIN,THSD7A,TMEM106B,VWDE"
TCGA.AA.3967.01A	7	11030292	16502122	126	0.1118	NEUTRAL	NA	12	"AGMO,ARL4A,DGKB,ETV1,ISPD,MEOX2,PHF14,SCIN,SOSTDC1,THSD7A,TMEM106B,VWDE"
TCGA.AG.A014.01A	7	11068291	27186955	609	0.3422	NEUTRAL	NA	66	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C7orf31,C7orf71,CBX3,CCDC126,CDCA7L,CYCS,DFNA5,DGKB,DNAH11,ETV1,FAM126A,FAM221A,FERD3L,GPNMB,HDAC9,HNRNPA2B1,HOXA1,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MPP6,NFE2L3,NPVF,NPY,NUPL2,OSBPL3,PHF14,PRPS1L1,RAPGEF5,SCIN,SKAP2,SNX10,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,VWDE"
TCGA.AM.5820	7	11419103	11977533	305	0.056	NEUTRAL	NA	1	THSD7A
TCGA.A6.5662	7	11605507	159119219	42108	0.0133	NEUTRAL	NA	800	Too-Many
TCGA.AG.A032.01A	7	11632904	20739419	231	-0.0947	NEUTRAL	NA	28	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,DGKB,ETV1,FERD3L,HDAC9,ISPD,ITGB8,LRRC72,MACC1,MEOX2,PRPS1L1,SCIN,SNX13,SOSTDC1,THSD7A,TMEM106B,TMEM196,TSPAN13,TWIST1,TWISTNB,VWDE"
TCGA.A6.6648	7	11675497	13218050	664	0.284	NEUTRAL	NA	5	"ARL4A,SCIN,THSD7A,TMEM106B,VWDE"
TCGA.AG.3909.01A	7	11675730	11871342	2	0.2716	NEUTRAL	NA	1	THSD7A
TCGA.AA.3850	7	11766162	20689419	3644	-0.48375	NEUTRAL	NA	28	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,DGKB,ETV1,FERD3L,HDAC9,ISPD,ITGB8,LRRC72,MACC1,MEOX2,PRPS1L1,SCIN,SNX13,SOSTDC1,THSD7A,TMEM106B,TMEM196,TSPAN13,TWIST1,TWISTNB,VWDE"
TCGA.AA.3941	7	11786453	11934919	72	-0.2131	NEUTRAL	NA	1	THSD7A
TCGA.AG.3594	7	11921418	159119219	42080	-0.0015	NEUTRAL	NA	799	Too-Many
TCGA.A6.2681	7	11932739	12230558	168	-0.1316	NEUTRAL	NA	0	None
TCGA.AA.3941	7	11949946	16300178	1741	-0.0074	NEUTRAL	NA	9	"AGMO,ARL4A,DGKB,ETV1,ISPD,MEOX2,SCIN,TMEM106B,VWDE"
TCGA.AA.3989	7	11950060	13462619	606	-0.0509	NEUTRAL	NA	4	"ARL4A,SCIN,TMEM106B,VWDE"
TCGA.AA.3844	7	11967316	13405693	579	0.2365	NEUTRAL	NA	4	"ARL4A,SCIN,TMEM106B,VWDE"
TCGA.AF.2689	7	12078374	38280223	10292	0.2798	NEUTRAL	NA	120	Too-Many
TCGA.A6.2681	7	12234630	159119219	41873	0.3203	NEUTRAL	NA	799	Too-Many
TCGA.CL.4957	7	12509226	13010194	193	-0.3268	NEUTRAL	NA	2	"ARL4A,SCIN"
TCGA.CL.4957	7	13067197	13911000	342	-0.3033	NEUTRAL	NA	0	None
TCGA.CM.6163	7	13183846	13281952	39	-0.2506	NEUTRAL	NA	0	None
TCGA.A6.6648	7	13218761	13256497	20	-0.2219	NEUTRAL	NA	0	None
TCGA.A6.6648	7	13260839	47554878	12860	0.2442	NEUTRAL	NA	166	Too-Many
TCGA.A6.6653	7	13266711	68188318	17181	-0.0004	NEUTRAL	NA	221	Too-Many
TCGA.CM.6163	7	13283085	13582793	115	0.25	NEUTRAL	NA	0	None
TCGA.AA.3695	7	13333828	38287926	9801	0.3137	NEUTRAL	NA	116	Too-Many
TCGA.AA.3811	7	13473993	13582793	53	-0.2084	NEUTRAL	NA	0	None
TCGA.AA.3872	7	13473993	14844335	560	0.2629	NEUTRAL	NA	2	"DGKB,ETV1"
TCGA.AA.3989	7	13473993	14844335	559	-0.0564	NEUTRAL	NA	2	"DGKB,ETV1"
TCGA.AA.3977	7	13473993	24019761	4213	-0.0256	NEUTRAL	NA	41	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,BZW2,CCDC126,CDCA7L,DGKB,DNAH11,ETV1,FAM126A,FAM221A,FERD3L,GPNMB,HDAC9,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,NUPL2,PRPS1L1,RAPGEF5,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB"
TCGA.AA.3866	7	13473993	38303119	9750	0.2379	NEUTRAL	NA	117	Too-Many
TCGA.AA.3844	7	13491749	14254733	338	0.1587	NEUTRAL	NA	2	"DGKB,ETV1"
TCGA.CM.6163	7	13591196	64692185	16295	0.1563	NEUTRAL	NA	210	Too-Many
TCGA.G4.6311	7	13599215	159119219	41372	0.2632	NEUTRAL	NA	795	Too-Many
TCGA.AA.3811	7	13649555	16358426	1091	0.0345	NEUTRAL	NA	5	"AGMO,DGKB,ETV1,ISPD,MEOX2"
TCGA.AZ.6606	7	13674178	13727347	38	-0.0868	NEUTRAL	NA	0	None
TCGA.CL.4957	7	13911032	159119219	41258	0.0726	NEUTRAL	NA	795	Too-Many
TCGA.AA.3844	7	14286112	15766483	565	0.039	NEUTRAL	NA	3	"AGMO,DGKB,MEOX2"
TCGA.CK.5914.01A	7	14722150	16704996	62	0.0853	NEUTRAL	NA	8	"AGMO,ANKMY2,BZW2,DGKB,ISPD,LRRC72,MEOX2,SOSTDC1"
TCGA.AA.3841	7	14727126	14730794	3	-0.382	NEUTRAL	NA	1	DGKB
TCGA.AA.3989	7	14847988	38287926	9184	0.0305	NEUTRAL	NA	115	Too-Many
TCGA.AA.3660	7	15172273	140071314	34967	0.3379	NEUTRAL	NA	648	Too-Many
TCGA.AG.3906.01A	7	15458139	23682503	369	-0.0052	NEUTRAL	NA	37	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,BZW2,CCDC126,CDCA7L,DNAH11,FAM126A,FERD3L,GPNMB,HDAC9,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,NUPL2,PRPS1L1,RAPGEF5,SNX13,SOSTDC1,SP4,SP8,STEAP1B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB"
TCGA.AA.A010.01A	7	15470593	16793527	52	0.1484	NEUTRAL	NA	8	"AGMO,ANKMY2,BZW2,ISPD,LRRC72,MEOX2,SOSTDC1,TSPAN13"
TCGA.AA.A01Q.01A	7	15599729	27134840	329	0.0748	NEUTRAL	NA	53	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,BZW2,C7orf31,C7orf71,CBX3,CCDC126,CDCA7L,CYCS,DFNA5,DNAH11,FAM126A,FAM221A,FERD3L,GPNMB,HDAC9,HNRNPA2B1,HOXA1,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MPP6,NFE2L3,NPVF,NPY,NUPL2,OSBPL3,PRPS1L1,RAPGEF5,SKAP2,SNX10,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB"
TCGA.D5.5539	7	15744491	72765457	17382	0.2667	NEUTRAL	NA	225	Too-Many
TCGA.AA.3844	7	15768332	18347656	1090	0.323	NEUTRAL	NA	12	"AGR2,AGR3,AHR,ANKMY2,BZW2,HDAC9,ISPD,LRRC72,PRPS1L1,SNX13,SOSTDC1,TSPAN13"
TCGA.AA.3811	7	16360471	16931240	282	0.3399	NEUTRAL	NA	8	"AGR2,AGR3,ANKMY2,BZW2,ISPD,LRRC72,SOSTDC1,TSPAN13"
TCGA.D5.6930	7	16576250	159119219	40087	0.0022	NEUTRAL	NA	789	Too-Many
TCGA.AD.6963	7	16597439	159119219	40124	0.1976	NEUTRAL	NA	789	Too-Many
TCGA.AZ.4684.01A	7	16675952	16902194	31	0.2472	NEUTRAL	NA	5	"AGR2,AGR3,ANKMY2,BZW2,TSPAN13"
TCGA.AG.4009.01A	7	16793527	16841261	12	-0.1359	NEUTRAL	NA	2	"AGR2,TSPAN13"
TCGA.CK.5914.01A	7	16815819	16902194	16	-0.3401	NEUTRAL	NA	3	"AGR2,AGR3,TSPAN13"
TCGA.AG.3909.01A	7	16840745	17349558	10	-0.101	NEUTRAL	NA	3	"AGR2,AGR3,AHR"
TCGA.AG.A00C.01A	7	16899164	23191656	267	-0.0959	NEUTRAL	NA	22	"ABCB5,AGR3,AHR,CDCA7L,DNAH11,FAM126A,FERD3L,HDAC9,IL6,ITGB8,KLHL7,MACC1,PRPS1L1,RAPGEF5,SNX13,SP4,SP8,STEAP1B,TMEM196,TOMM7,TWIST1,TWISTNB"
TCGA.AA.A00N.01A	7	16900031	17382493	18	0.3758	NEUTRAL	NA	2	"AGR3,AHR"
TCGA.AA.3811	7	16956378	17580978	263	0.1806	NEUTRAL	NA	1	AHR
TCGA.AA.3867	7	17076416	17082893	8	-0.4516	NEUTRAL	NA	0	None
TCGA.AA.3867	7	17083944	17822385	339	0.1948	NEUTRAL	NA	1	AHR
TCGA.AA.3941	7	17089942	17580978	200	0.3119	NEUTRAL	NA	1	AHR
TCGA.CK.5914.01A	7	17369529	17855763	15	-0.174	NEUTRAL	NA	2	"AHR,SNX13"
TCGA.AA.3941	7	17815359	17948589	35	-0.2187	NEUTRAL	NA	1	SNX13
TCGA.AA.3811	7	17815359	20392310	944	-0.0386	NEUTRAL	NA	9	"FERD3L,HDAC9,ITGB8,MACC1,PRPS1L1,SNX13,TMEM196,TWIST1,TWISTNB"
TCGA.AA.3867	7	17823623	17908545	16	-0.3424	NEUTRAL	NA	1	SNX13
TCGA.AA.3967.01A	7	17838260	19184466	49	-0.0023	NEUTRAL	NA	5	"FERD3L,HDAC9,PRPS1L1,SNX13,TWIST1"
TCGA.AA.A010.01A	7	17854428	19184466	50	-0.2016	NEUTRAL	NA	5	"FERD3L,HDAC9,PRPS1L1,SNX13,TWIST1"
TCGA.AA.A01C.01A	7	17855763	21603757	112	0.2293	NEUTRAL	NA	13	"ABCB5,DNAH11,FERD3L,HDAC9,ITGB8,MACC1,PRPS1L1,SNX13,SP4,SP8,TMEM196,TWIST1,TWISTNB"
TCGA.AA.A00N.01A	7	17861085	17879383	6	0.0907	NEUTRAL	NA	1	SNX13
TCGA.CK.5914.01A	7	17907975	17929939	6	0.0784	NEUTRAL	NA	1	SNX13
TCGA.DM.A28M.01A	7	17907975	35840753	885	0.2474	NEUTRAL	NA	93	"ABCB5,ADCYAP1R1,AQP1,AVL9,BBS9,BMPER,C7orf31,C7orf71,CBX3,CCDC126,CCDC129,CDCA7L,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,DNAH11,DPY19L1,EVX1,FAM126A,FAM188B,FAM221A,FERD3L,FKBP14,FKBP9,GARS,GGCT,GHRHR,GPNMB,HDAC9,HERPUD2,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,INMT,ITGB8,JAZF1,KBTBD2,KLHL7,LSM5,MACC1,MALSU1,MPP6,MTURN,NEUROD6,NFE2L3,NOD1,NPSR1,NPVF,NPY,NT5C3A,NUPL2,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRPS1L1,PRR15,RAPGEF5,RP9,SCRN1,SEPT7,SKAP2,SNX10,SNX13,SP4,SP8,STEAP1B,STK31,TAX1BP1,TBX20,TMEM196,TOMM7,TRA2A,TRIL,TWIST1,TWISTNB,WIPF3,ZNRF2"
TCGA.AA.3867	7	17911037	37641420	7631	0.1904	NEUTRAL	NA	98	"ABCB5,ADCYAP1R1,ANLN,AOAH,AQP1,AVL9,BBS9,BMPER,C7orf31,C7orf71,CBX3,CCDC126,CCDC129,CDCA7L,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,DNAH11,DPY19L1,EEPD1,ELMO1,EVX1,FAM126A,FAM188B,FAM221A,FERD3L,FKBP14,FKBP9,GARS,GGCT,GHRHR,GPNMB,HDAC9,HERPUD2,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,INMT,ITGB8,JAZF1,KBTBD2,KIAA0895,KLHL7,LSM5,MACC1,MALSU1,MPP6,MTURN,NEUROD6,NFE2L3,NOD1,NPSR1,NPVF,NPY,NT5C3A,NUPL2,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRPS1L1,PRR15,RAPGEF5,RP9,SCRN1,SEPT7,SKAP2,SNX10,SNX13,SP4,SP8,STEAP1B,STK31,TAX1BP1,TBX20,TMEM196,TOMM7,TRA2A,TRIL,TWIST1,TWISTNB,WIPF3,ZNRF2"
TCGA.AA.3941	7	18071199	18084505	8	-0.0269	NEUTRAL	NA	0	None
TCGA.AA.3941	7	18244781	20360394	797	-0.1995	NEUTRAL	NA	6	"FERD3L,HDAC9,MACC1,TMEM196,TWIST1,TWISTNB"
TCGA.AA.3844	7	18361174	19939811	600	-0.0395	NEUTRAL	NA	5	"FERD3L,HDAC9,TMEM196,TWIST1,TWISTNB"
TCGA.CK.5914.01A	7	18869028	20823872	67	0.3082	NEUTRAL	NA	9	"ABCB5,FERD3L,HDAC9,ITGB8,MACC1,SP8,TMEM196,TWIST1,TWISTNB"
TCGA.AA.3673	7	18938080	38290713	7533	0.1103	NEUTRAL	NA	101	Too-Many
TCGA.F5.6465	7	19472218	48682092	10734	0.0018	NEUTRAL	NA	156	Too-Many
TCGA.AG.3909.01A	7	19737892	19744373	3	-0.3544	NEUTRAL	NA	1	TWISTNB
TCGA.AA.3844	7	19940122	21675223	692	0.3157	NEUTRAL	NA	6	"ABCB5,DNAH11,ITGB8,MACC1,SP4,SP8"
TCGA.AA.A010.01A	7	20180539	20406585	8	-0.2277	NEUTRAL	NA	2	"ITGB8,MACC1"
TCGA.AA.3811	7	20395169	37641717	6709	0.3353	NEUTRAL	NA	90	"ABCB5,ADCYAP1R1,ANLN,AOAH,AQP1,AVL9,BBS9,BMPER,C7orf31,C7orf71,CBX3,CCDC126,CCDC129,CDCA7L,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,DNAH11,DPY19L1,EEPD1,ELMO1,EVX1,FAM126A,FAM188B,FAM221A,FKBP14,FKBP9,GARS,GGCT,GHRHR,GPNMB,HERPUD2,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,INMT,ITGB8,JAZF1,KBTBD2,KIAA0895,KLHL7,LSM5,MALSU1,MPP6,MTURN,NEUROD6,NFE2L3,NOD1,NPSR1,NPVF,NPY,NT5C3A,NUPL2,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRR15,RAPGEF5,RP9,SCRN1,SEPT7,SKAP2,SNX10,SP4,SP8,STEAP1B,STK31,TAX1BP1,TBX20,TOMM7,TRA2A,TRIL,WIPF3,ZNRF2"
TCGA.AA.3850	7	20689494	48580941	10195	0.04855	NEUTRAL	NA	152	Too-Many
TCGA.AA.3509.01A	7	20691005	35840753	800	0.0396	NEUTRAL	NA	84	"ABCB5,ADCYAP1R1,AQP1,AVL9,BBS9,BMPER,C7orf31,C7orf71,CBX3,CCDC126,CCDC129,CDCA7L,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,DNAH11,DPY19L1,EVX1,FAM126A,FAM188B,FAM221A,FKBP14,FKBP9,GARS,GGCT,GHRHR,GPNMB,HERPUD2,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,INMT,JAZF1,KBTBD2,KLHL7,LSM5,MALSU1,MPP6,MTURN,NEUROD6,NFE2L3,NOD1,NPSR1,NPVF,NPY,NT5C3A,NUPL2,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRR15,RAPGEF5,RP9,SCRN1,SEPT7,SKAP2,SNX10,SP4,SP8,STEAP1B,STK31,TAX1BP1,TBX20,TOMM7,TRA2A,TRIL,WIPF3,ZNRF2"
TCGA.AA.3982	7	20695697	43761121	8657	0.2235	NEUTRAL	NA	111	Too-Many
TCGA.AA.A010.01A	7	20737978	20795010	12	0.1332	NEUTRAL	NA	1	ABCB5
TCGA.AG.A032.01A	7	20739671	33376026	634	0.2051	NEUTRAL	NA	78	"ABCB5,ADCYAP1R1,AQP1,AVL9,BBS9,C7orf31,C7orf71,CBX3,CCDC126,CCDC129,CDCA7L,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,DNAH11,EVX1,FAM126A,FAM188B,FAM221A,FKBP14,FKBP9,GARS,GGCT,GHRHR,GPNMB,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,INMT,JAZF1,KBTBD2,KLHL7,LSM5,MALSU1,MPP6,MTURN,NEUROD6,NFE2L3,NOD1,NPVF,NPY,NT5C3A,NUPL2,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRR15,RAPGEF5,RP9,SCRN1,SKAP2,SNX10,SP4,SP8,STEAP1B,STK31,TAX1BP1,TOMM7,TRA2A,TRIL,WIPF3,ZNRF2"
TCGA.AG.A01N.01A	7	20744292	21469857	13	-0.2872	NEUTRAL	NA	3	"ABCB5,SP4,SP8"
TCGA.AG.4009.01A	7	20823872	21469857	5	-0.4985	NEUTRAL	NA	2	"SP4,SP8"
TCGA.AG.3909.01A	7	20823872	21598368	12	-0.4146	NEUTRAL	NA	3	"DNAH11,SP4,SP8"
TCGA.AA.3841	7	21398773	21399154	3	-0.4865	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	7	21510624	21584573	6	-0.0715	NEUTRAL	NA	2	"DNAH11,SP4"
TCGA.AA.3967.01A	7	21510624	21904102	73	0.3273	NEUTRAL	NA	2	"DNAH11,SP4"
TCGA.AA.A010.01A	7	21510624	23053493	146	0.0913	NEUTRAL	NA	8	"CDCA7L,DNAH11,FAM126A,IL6,RAPGEF5,SP4,STEAP1B,TOMM7"
TCGA.AA.A01T	7	21557853	21823074	136	-0.2745	NEUTRAL	NA	1	DNAH11
TCGA.AG.3909.01A	7	21599171	21609650	4	0.3491	NEUTRAL	NA	1	DNAH11
TCGA.CK.5914.01A	7	21639377	21654684	6	0.1557	NEUTRAL	NA	1	DNAH11
TCGA.CK.5914.01A	7	21760301	21784437	8	0.1946	NEUTRAL	NA	1	DNAH11
TCGA.AA.A01T	7	21824305	87298867	18498	0.3203	NEUTRAL	NA	277	Too-Many
TCGA.AA.A01C.01A	7	21912845	24789156	166	0.2871	NEUTRAL	NA	19	"CCDC126,CDCA7L,DFNA5,DNAH11,FAM126A,FAM221A,GPNMB,IGF2BP3,IL6,KLHL7,MALSU1,MPP6,NPY,NUPL2,RAPGEF5,STEAP1B,STK31,TOMM7,TRA2A"
TCGA.AG.A01N.01A	7	22270404	22769085	12	-0.3882	NEUTRAL	NA	3	"IL6,RAPGEF5,STEAP1B"
TCGA.CK.5914.01A	7	22306507	22766815	12	0.2709	NEUTRAL	NA	3	"IL6,RAPGEF5,STEAP1B"
TCGA.AG.3909.01A	7	22532147	22534356	3	-0.4964	NEUTRAL	NA	1	STEAP1B
TCGA.AA.A00N.01A	7	22532147	22861777	10	-0.3085	NEUTRAL	NA	3	"IL6,STEAP1B,TOMM7"
TCGA.AG.A01Y	7	22536812	159119219	37554	0.0361	NEUTRAL	NA	767	Too-Many
TCGA.AG.A01N.01A	7	22770978	31377852	410	0.2682	NEUTRAL	NA	61	"ADCYAP1R1,AQP1,C7orf31,C7orf71,CBX3,CCDC126,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,EVX1,FAM126A,FAM188B,FAM221A,FKBP14,GARS,GGCT,GHRHR,GPNMB,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,INMT,JAZF1,KLHL7,MALSU1,MPP6,MTURN,NEUROD6,NFE2L3,NOD1,NPVF,NPY,NUPL2,OSBPL3,PLEKHA8,PRR15,SCRN1,SKAP2,SNX10,STK31,TAX1BP1,TOMM7,TRA2A,TRIL,WIPF3,ZNRF2"
TCGA.CK.5914.01A	7	23145598	23221686	15	0.0059	NEUTRAL	NA	2	"KLHL7,NUPL2"
TCGA.AG.3909.01A	7	23205289	23221686	5	-0.0525	NEUTRAL	NA	2	"KLHL7,NUPL2"
TCGA.AG.A00C.01A	7	23205289	23757053	57	0.2575	NEUTRAL	NA	9	"CCDC126,FAM221A,GPNMB,IGF2BP3,KLHL7,MALSU1,NUPL2,STK31,TRA2A"
TCGA.AA.A00N.01A	7	23292899	23768670	51	-0.4938	NEUTRAL	NA	7	"CCDC126,FAM221A,GPNMB,IGF2BP3,MALSU1,STK31,TRA2A"
TCGA.CK.5914.01A	7	23293739	23401103	24	0.3248	NEUTRAL	NA	3	"GPNMB,IGF2BP3,MALSU1"
TCGA.AG.3909.01A	7	23293739	23571336	35	0.3584	NEUTRAL	NA	4	"GPNMB,IGF2BP3,MALSU1,TRA2A"
TCGA.CK.5914.01A	7	23458318	23775135	27	-0.3242	NEUTRAL	NA	5	"CCDC126,FAM221A,IGF2BP3,STK31,TRA2A"
TCGA.DM.A1D9	7	23502517	61987337	11964	0.1058	NEUTRAL	NA	164	Too-Many
TCGA.AA.A010.01A	7	23508034	25267873	103	0.2865	NEUTRAL	NA	12	"C7orf31,CCDC126,CYCS,DFNA5,FAM221A,IGF2BP3,MPP6,NPVF,NPY,OSBPL3,STK31,TRA2A"
TCGA.AG.3611.01A	7	23719783	23737761	5	0.0299	NEUTRAL	NA	1	FAM221A
TCGA.AG.3906.01A	7	23724116	24705578	40	-0.3042	NEUTRAL	NA	4	"FAM221A,MPP6,NPY,STK31"
TCGA.AG.3611.01A	7	23740349	55498865	1078	0.2513	NEUTRAL	NA	148	Too-Many
TCGA.AG.A00C.01A	7	23766798	25198078	72	-0.1263	NEUTRAL	NA	7	"C7orf31,CYCS,DFNA5,MPP6,NPY,OSBPL3,STK31"
TCGA.AA.3977	7	24055010	38303119	5507	0.0529	NEUTRAL	NA	76	"ADCYAP1R1,ANLN,AOAH,AQP1,AVL9,BBS9,BMPER,C7orf31,C7orf71,CBX3,CCDC129,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,DPY19L1,EEPD1,ELMO1,EPDR1,EVX1,FAM188B,FKBP14,FKBP9,GARS,GGCT,GHRHR,GPR141,HERPUD2,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,INMT,JAZF1,KBTBD2,KIAA0895,LSM5,MPP6,MTURN,NEUROD6,NFE2L3,NME8,NOD1,NPSR1,NPVF,NPY,NT5C3A,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRR15,RP9,SCRN1,SEPT7,SFRP4,SKAP2,SNX10,STARD3NL,TARP,TAX1BP1,TBX20,TRIL,WIPF3,ZNRF2"
TCGA.CK.6747	7	24278479	159119219	36929	0.0151	NEUTRAL	NA	754	Too-Many
TCGA.AA.A00Q.01A	7	24324820	24331195	3	-0.1227	NEUTRAL	NA	1	NPY
TCGA.AG.3906.01A	7	24708068	25267873	47	0.0611	NEUTRAL	NA	6	"C7orf31,CYCS,DFNA5,MPP6,NPVF,OSBPL3"
TCGA.AZ.4684.01A	7	24708068	26685902	78	0.3118	NEUTRAL	NA	11	"C7orf31,C7orf71,CBX3,CYCS,DFNA5,HNRNPA2B1,MPP6,NFE2L3,NPVF,OSBPL3,SNX10"
TCGA.AG.A01W.01A	7	24712279	24872176	25	-0.093	NEUTRAL	NA	3	"DFNA5,MPP6,OSBPL3"
TCGA.AA.A00D.01A	7	24738598	25181809	33	-0.1253	NEUTRAL	NA	4	"C7orf31,CYCS,DFNA5,OSBPL3"
TCGA.AA.A00Q.01A	7	24738598	32914587	332	0.307	NEUTRAL	NA	53	"ADCYAP1R1,AQP1,AVL9,C7orf31,C7orf71,CBX3,CCDC129,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,EVX1,FAM188B,FKBP14,GARS,GGCT,GHRHR,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,INMT,JAZF1,KBTBD2,LSM5,MTURN,NEUROD6,NFE2L3,NOD1,NPVF,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRR15,SCRN1,SKAP2,SNX10,TAX1BP1,TRIL,WIPF3,ZNRF2"
TCGA.AA.A01C.01A	7	24849389	44713356	851	0.3559	NEUTRAL	NA	109	Too-Many
TCGA.AG.3891.01A	7	25182222	26385985	28	0.3022	NEUTRAL	NA	6	"C7orf31,CBX3,HNRNPA2B1,NFE2L3,NPVF,SNX10"
TCGA.AA.3517	7	25276423	25531395	140	-0.0423	NEUTRAL	NA	0	None
TCGA.AA.3517	7	25532590	159119219	36442	0.2544	NEUTRAL	NA	747	Too-Many
TCGA.G4.6299	7	25629696	25875966	110	0.2666	NEUTRAL	NA	0	None
TCGA.5M.AAT4	7	25789507	110445010	22788	0.3496	NEUTRAL	NA	459	Too-Many
TCGA.AG.4009.01A	7	26223266	26412065	21	-0.1858	NEUTRAL	NA	4	"CBX3,HNRNPA2B1,NFE2L3,SNX10"
TCGA.AG.3909.01A	7	26240098	26685902	14	-0.1439	NEUTRAL	NA	4	"C7orf71,CBX3,HNRNPA2B1,SNX10"
TCGA.AA.3930.01A	7	26242549	29234485	119	0.0044	NEUTRAL	NA	23	"C7orf71,CBX3,CHN2,CPVL,CREB5,EVX1,HIBADH,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,JAZF1,SKAP2,SNX10,TAX1BP1,TRIL"
TCGA.CK.5914.01A	7	26251725	26412065	8	-0.1755	NEUTRAL	NA	2	"CBX3,SNX10"
TCGA.AG.3906.01A	7	26385985	26903919	18	-0.187	NEUTRAL	NA	3	"C7orf71,SKAP2,SNX10"
TCGA.AG.3891.01A	7	26400571	43832267	702	-0.1179	NEUTRAL	NA	83	"ADCYAP1R1,AMPH,ANLN,AOAH,AQP1,AVL9,BBS9,BLVRA,BMPER,C7orf25,C7orf71,CCDC129,CDK13,CHN2,COA1,CPVL,CREB5,CRHR2,DPY19L1,EEPD1,ELMO1,EPDR1,EVX1,FAM188B,FKBP14,FKBP9,GARS,GGCT,GHRHR,GLI3,GPR141,HECW1,HERPUD2,HIBADH,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,INHBA,INMT,JAZF1,KBTBD2,KIAA0895,LSM5,MPLKIP,MRPL32,MTURN,NEUROD6,NME8,NOD1,NPSR1,NT5C3A,PDE1C,PLEKHA8,POU6F2,PPP1R17,PRR15,PSMA2,RALA,RP9,SCRN1,SEPT7,SFRP4,SKAP2,SNX10,STARD3NL,STK17A,SUGCT,TARP,TAX1BP1,TBX20,TRIL,VPS41,WIPF3,YAE1D1,ZNRF2"
TCGA.AA.A00D.01A	7	26412065	29994754	108	0.0708	NEUTRAL	NA	25	"C7orf71,CHN2,CPVL,CREB5,EVX1,HIBADH,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,JAZF1,PRR15,SCRN1,SKAP2,SNX10,TAX1BP1,TRIL,WIPF3"
TCGA.AA.A010.01A	7	26576324	26933368	18	0.2208	NEUTRAL	NA	2	"C7orf71,SKAP2"
TCGA.AA.3844	7	26702505	26823624	37	0.0524	NEUTRAL	NA	1	SKAP2
TCGA.AA.A00F.01A	7	26709668	26903919	12	0.2389	NEUTRAL	NA	1	SKAP2
TCGA.AG.A00C.01A	7	26709668	26903919	12	-0.2785	NEUTRAL	NA	1	SKAP2
TCGA.CK.5914.01A	7	26933368	27285475	28	-0.4116	NEUTRAL	NA	12	"EVX1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.AF.2693	7	27127230	27320036	32	-0.4819	NEUTRAL	NA	12	"EVX1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.AG.A00C.01A	7	27134037	27285475	25	0.3703	NEUTRAL	NA	12	"EVX1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.A6.3810.01A	7	27195854	27238796	11	0.3534	NEUTRAL	NA	5	"HOXA10,HOXA11,HOXA13,HOXA7,HOXA9"
TCGA.AA.A00J.01A	7	27209053	100405007	2738	0.0554	NEUTRAL	NA	368	Too-Many
TCGA.AA.A00F.01A	7	27282643	27934807	29	0.252	NEUTRAL	NA	4	"EVX1,HIBADH,JAZF1,TAX1BP1"
TCGA.AA.A00N.01A	7	27282643	29980256	94	0.354	NEUTRAL	NA	11	"CHN2,CPVL,CREB5,EVX1,HIBADH,JAZF1,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3"
TCGA.AA.A010.01A	7	27282643	30129684	120	0.1863	NEUTRAL	NA	13	"CHN2,CPVL,CREB5,EVX1,FKBP14,HIBADH,JAZF1,PLEKHA8,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3"
TCGA.AG.3906.01A	7	27282643	30475579	111	-0.0794	NEUTRAL	NA	16	"CHN2,CPVL,CREB5,EVX1,FKBP14,HIBADH,JAZF1,MTURN,NOD1,PLEKHA8,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3,ZNRF2"
TCGA.AA.A01Q.01A	7	27282643	31102806	155	0.0972	NEUTRAL	NA	24	"ADCYAP1R1,AQP1,CHN2,CPVL,CREB5,CRHR2,EVX1,FAM188B,FKBP14,GARS,GGCT,GHRHR,HIBADH,INMT,JAZF1,MTURN,NOD1,PLEKHA8,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3,ZNRF2"
TCGA.AF.2693	7	27322105	150708088	33043	0.015	NEUTRAL	NA	685	Too-Many
TCGA.AG.3882	7	27518844	27556705	20	0.0751	NEUTRAL	NA	0	None
TCGA.AG.3882	7	27559956	30725740	1238	0.3252	NEUTRAL	NA	18	"CHN2,CPVL,CREB5,CRHR2,FKBP14,GARS,GGCT,HIBADH,JAZF1,MTURN,NOD1,PLEKHA8,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3,ZNRF2"
TCGA.AG.A00C.01A	7	27565814	29994754	77	-0.0982	NEUTRAL	NA	10	"CHN2,CPVL,CREB5,HIBADH,JAZF1,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3"
TCGA.AF.3914.01A	7	27565814	65841962	1339	0.3535	NEUTRAL	NA	150	Too-Many
TCGA.AA.3967.01A	7	27570760	55991250	1195	0.3175	NEUTRAL	NA	124	Too-Many
TCGA.BM.6198	7	28172182	28289194	40	0.04785	NEUTRAL	NA	1	JAZF1
TCGA.AA.A00F.01A	7	28527752	32623367	189	0.3131	NEUTRAL	NA	26	"ADCYAP1R1,AQP1,AVL9,CCDC129,CHN2,CPVL,CREB5,CRHR2,FAM188B,FKBP14,GARS,GGCT,GHRHR,INMT,LSM5,MTURN,NEUROD6,NOD1,PDE1C,PLEKHA8,PPP1R17,PRR15,SCRN1,TRIL,WIPF3,ZNRF2"
TCGA.G4.6294	7	29386342	30467408	396	-0.063	NEUTRAL	NA	9	"CHN2,FKBP14,MTURN,NOD1,PLEKHA8,PRR15,SCRN1,WIPF3,ZNRF2"
TCGA.AA.3844	7	29415369	29426948	7	0.1095	NEUTRAL	NA	1	CHN2
TCGA.AA.3930.01A	7	29605905	30721504	97	0.0692	NEUTRAL	NA	11	"CRHR2,FKBP14,GARS,GGCT,MTURN,NOD1,PLEKHA8,PRR15,SCRN1,WIPF3,ZNRF2"
TCGA.EI.6512	7	29849569	159119219	34754	0.2873	NEUTRAL	NA	721	Too-Many
TCGA.AG.4009.01A	7	29980256	30395293	27	0.2856	NEUTRAL	NA	5	"FKBP14,MTURN,PLEKHA8,SCRN1,ZNRF2"
TCGA.AA.A00N.01A	7	30068250	30496300	39	0.0785	NEUTRAL	NA	4	"MTURN,NOD1,PLEKHA8,ZNRF2"
TCGA.AG.A00C.01A	7	30089969	30496300	29	-0.0454	NEUTRAL	NA	4	"MTURN,NOD1,PLEKHA8,ZNRF2"
TCGA.AA.A00D.01A	7	30185773	30705097	33	0.1371	NEUTRAL	NA	6	"CRHR2,GARS,GGCT,MTURN,NOD1,ZNRF2"
TCGA.AA.3844	7	30279850	30448406	31	0.1581	NEUTRAL	NA	1	ZNRF2
TCGA.D5.6536	7	30417965	159119219	34601	0.0106	NEUTRAL	NA	715	Too-Many
TCGA.CK.5914.01A	7	30468935	30668124	32	-0.36	NEUTRAL	NA	3	"GARS,GGCT,NOD1"
TCGA.AG.3909.01A	7	30472657	30651680	22	-0.3669	NEUTRAL	NA	3	"GARS,GGCT,NOD1"
TCGA.AG.3906.01A	7	30477174	30693029	31	-0.3567	NEUTRAL	NA	4	"CRHR2,GARS,GGCT,NOD1"
TCGA.AA.3950	7	30587331	135488334	27354	0.2713	NEUTRAL	NA	541	Too-Many
TCGA.AA.A02K.01A	7	30651681	37355459	339	0.2157	NEUTRAL	NA	29	"ADCYAP1R1,ANLN,AOAH,AQP1,AVL9,BBS9,BMPER,CCDC129,CRHR2,DPY19L1,EEPD1,ELMO1,FAM188B,FKBP9,GARS,GHRHR,HERPUD2,INMT,KBTBD2,KIAA0895,LSM5,NEUROD6,NPSR1,NT5C3A,PDE1C,PPP1R17,RP9,SEPT7,TBX20"
TCGA.AG.A00C.01A	7	30656723	43846524	528	-0.0743	NEUTRAL	NA	52	"ADCYAP1R1,AMPH,ANLN,AOAH,AQP1,AVL9,BBS9,BLVRA,BMPER,C7orf25,CCDC129,CDK13,COA1,CRHR2,DPY19L1,EEPD1,ELMO1,EPDR1,FAM188B,FKBP9,GARS,GHRHR,GLI3,GPR141,HECW1,HERPUD2,INHBA,INMT,KBTBD2,KIAA0895,LSM5,MPLKIP,MRPL32,NEUROD6,NME8,NPSR1,NT5C3A,PDE1C,POU6F2,PPP1R17,PSMA2,RALA,RP9,SEPT7,SFRP4,STARD3NL,STK17A,SUGCT,TARP,TBX20,VPS41,YAE1D1"
TCGA.AG.3906.01A	7	30694577	33075484	139	0.0084	NEUTRAL	NA	15	"ADCYAP1R1,AQP1,AVL9,CCDC129,CRHR2,FAM188B,FKBP9,GHRHR,INMT,KBTBD2,LSM5,NEUROD6,NT5C3A,PDE1C,PPP1R17"
TCGA.AA.A00D.01A	7	30706785	31682965	48	-0.1913	NEUTRAL	NA	8	"ADCYAP1R1,AQP1,CCDC129,CRHR2,FAM188B,GHRHR,INMT,NEUROD6"
TCGA.AG.3882	7	30738556	38287926	2821	0.3139	NEUTRAL	NA	33	"ADCYAP1R1,ANLN,AOAH,AQP1,AVL9,BBS9,BMPER,CCDC129,CRHR2,DPY19L1,EEPD1,ELMO1,EPDR1,FAM188B,FKBP9,GHRHR,GPR141,HERPUD2,INMT,KBTBD2,KIAA0895,LSM5,NEUROD6,NME8,NPSR1,NT5C3A,PDE1C,PPP1R17,RP9,SEPT7,SFRP4,STARD3NL,TBX20"
TCGA.AG.A01W.01A	7	30784534	30846846	8	-0.294	NEUTRAL	NA	2	"FAM188B,INMT"
TCGA.CK.5914.01A	7	30791719	30825368	8	-0.0471	NEUTRAL	NA	2	"FAM188B,INMT"
TCGA.AG.A01W.01A	7	30856567	30970142	14	0.1331	NEUTRAL	NA	2	"AQP1,FAM188B"
TCGA.BM.6198	7	30856777	126043028	24461	0.00085	NEUTRAL	NA	471	Too-Many
TCGA.AA.3930.01A	7	30898605	32772542	103	0.0416	NEUTRAL	NA	10	"ADCYAP1R1,AQP1,AVL9,CCDC129,FAM188B,GHRHR,LSM5,NEUROD6,PDE1C,PPP1R17"
TCGA.AG.A01W.01A	7	30974927	31087773	16	-0.3188	NEUTRAL	NA	1	GHRHR
TCGA.AA.A010.01A	7	31015345	32209359	60	-0.2534	NEUTRAL	NA	6	"ADCYAP1R1,CCDC129,GHRHR,NEUROD6,PDE1C,PPP1R17"
TCGA.AG.A01W.01A	7	31090235	35644465	180	0.3337	NEUTRAL	NA	16	"ADCYAP1R1,AVL9,BBS9,BMPER,CCDC129,DPY19L1,FKBP9,KBTBD2,LSM5,NEUROD6,NPSR1,NT5C3A,PDE1C,PPP1R17,RP9,TBX20"
TCGA.AA.A01Q.01A	7	31146069	38937621	296	0.0948	NEUTRAL	NA	31	"ADCYAP1R1,AMPH,ANLN,AOAH,AVL9,BBS9,BMPER,CCDC129,DPY19L1,EEPD1,ELMO1,EPDR1,FKBP9,GPR141,HERPUD2,KBTBD2,KIAA0895,LSM5,NEUROD6,NME8,NPSR1,NT5C3A,PDE1C,PPP1R17,RP9,SEPT7,SFRP4,STARD3NL,TARP,TBX20,VPS41"
TCGA.G4.6322	7	31656771	65920197	9208	-6.00E-04	NEUTRAL	NA	126	Too-Many
TCGA.AA.A00D.01A	7	31690707	31829768	9	0.2421	NEUTRAL	NA	3	"CCDC129,PDE1C,PPP1R17"
TCGA.AA.A00D.01A	7	31848582	32209359	17	-0.3348	NEUTRAL	NA	1	PDE1C
TCGA.AA.A00D.01A	7	32526793	35709783	106	0.0339	NEUTRAL	NA	12	"AVL9,BBS9,BMPER,DPY19L1,FKBP9,HERPUD2,KBTBD2,LSM5,NPSR1,NT5C3A,RP9,TBX20"
TCGA.AA.A00N.01A	7	32535267	33060850	36	0.3326	NEUTRAL	NA	4	"AVL9,FKBP9,KBTBD2,NT5C3A"
TCGA.AA.A010.01A	7	32997134	33028097	7	-0.3822	NEUTRAL	NA	1	FKBP9
TCGA.AA.A00F.01A	7	33019925	37936461	166	0.2876	NEUTRAL	NA	17	"ANLN,AOAH,BBS9,BMPER,DPY19L1,EEPD1,ELMO1,FKBP9,GPR141,HERPUD2,KIAA0895,NME8,NPSR1,NT5C3A,RP9,SEPT7,TBX20"
TCGA.AH.6549.01A	7	33055255	33644776	38	-0.486	NEUTRAL	NA	3	"BBS9,NT5C3A,RP9"
TCGA.AA.A00N.01A	7	33061587	33217073	15	-0.4779	NEUTRAL	NA	3	"BBS9,NT5C3A,RP9"
TCGA.AA.A00Q.01A	7	33061587	56170511	758	0.3341	NEUTRAL	NA	100	"ABCA13,ADCY1,AEBP1,AMPH,ANLN,AOAH,BBS9,BLVRA,BMPER,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,DPY19L1,EEPD1,EGFR,ELMO1,EPDR1,FIGNL1,GBAS,GCK,GLI3,GPR141,GRB10,H2AFV,HECW1,HERPUD2,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,KIAA0895,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NPSR1,NT5C3A,NUDCD3,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,RP9,SEC61G,SEPT14,SEPT7,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,SUMF2,SUN3,TARP,TBRG4,TBX20,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF713,ZPBP"
TCGA.AA.3522	7	33074784	33631379	171	-0.3437	NEUTRAL	NA	3	"BBS9,NT5C3A,RP9"
TCGA.AA.3930.01A	7	33136851	36655937	151	-0.0517	NEUTRAL	NA	12	"ANLN,AOAH,BBS9,BMPER,DPY19L1,EEPD1,HERPUD2,KIAA0895,NPSR1,RP9,SEPT7,TBX20"
TCGA.AG.3906.01A	7	33185843	33380491	10	-0.0691	NEUTRAL	NA	1	BBS9
TCGA.AA.A010.01A	7	33185843	35008998	65	0.3571	NEUTRAL	NA	4	"BBS9,BMPER,DPY19L1,NPSR1"
TCGA.AG.3902	7	33192799	37619921	1624	0.0126	NEUTRAL	NA	12	"ANLN,AOAH,BBS9,BMPER,DPY19L1,EEPD1,ELMO1,HERPUD2,KIAA0895,NPSR1,SEPT7,TBX20"
TCGA.EI.6508	7	33277175	33550040	74	0.0054	NEUTRAL	NA	1	BBS9
TCGA.AG.A032.01A	7	33380491	41729281	288	-0.1055	NEUTRAL	NA	27	"AMPH,ANLN,AOAH,BBS9,BMPER,CDK13,DPY19L1,EEPD1,ELMO1,EPDR1,GPR141,HERPUD2,INHBA,KIAA0895,MPLKIP,NME8,NPSR1,POU6F2,RALA,SEPT7,SFRP4,STARD3NL,SUGCT,TARP,TBX20,VPS41,YAE1D1"
TCGA.AG.3906.01A	7	33407330	44260165	430	-0.0158	NEUTRAL	NA	49	"AEBP1,AMPH,ANLN,AOAH,BBS9,BLVRA,BMPER,C7orf25,CAMK2B,CDK13,COA1,DBNL,DPY19L1,EEPD1,ELMO1,EPDR1,GCK,GLI3,GPR141,HECW1,HERPUD2,INHBA,KIAA0895,MPLKIP,MRPL32,MRPS24,MYL7,NME8,NPSR1,PGAM2,POLD2,POLM,POU6F2,PSMA2,RALA,SEPT7,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,TARP,TBX20,UBE2D4,URGCP,URGCP-MRPS24,VPS41,YAE1D1,YKT6"
TCGA.AG.3881	7	33430007	34755974	491	-0.2782	NEUTRAL	NA	3	"BBS9,BMPER,NPSR1"
TCGA.QL.A97D	7	33527553	159119219	33462	0.0534	NEUTRAL	NA	696	Too-Many
TCGA.AA.3522	7	33631991	159119219	33407	0.013	NEUTRAL	NA	696	Too-Many
TCGA.AH.6549.01A	7	33945189	88847421	2095	-0.0324	NEUTRAL	NA	209	Too-Many
TCGA.AA.3495	7	34080353	42597998	3057	0.3232	NEUTRAL	NA	27	"AMPH,ANLN,AOAH,BMPER,CDK13,DPY19L1,EEPD1,ELMO1,EPDR1,GLI3,GPR141,HERPUD2,INHBA,KIAA0895,MPLKIP,NME8,NPSR1,POU6F2,RALA,SEPT7,SFRP4,STARD3NL,SUGCT,TARP,TBX20,VPS41,YAE1D1"
TCGA.AZ.4614	7	34293292	159119219	32773	0.0151	NEUTRAL	NA	694	Too-Many
TCGA.AG.3881	7	34756509	159119219	33021	0.0463	NEUTRAL	NA	694	Too-Many
TCGA.A6.2671	7	35169722	57537135	7529	0.3766	NEUTRAL	NA	97	"ABCA13,ADCY1,AEBP1,AMPH,ANLN,AOAH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EEPD1,EGFR,ELMO1,EPDR1,FIGNL1,GBAS,GCK,GLI3,GPR141,GRB10,H2AFV,HECW1,HERPUD2,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,KIAA0895,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SEPT7,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,SUMF2,SUN3,TARP,TBRG4,TBX20,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.A6.3808.01A	7	35242005	36465535	56	-0.0784	NEUTRAL	NA	6	"ANLN,EEPD1,HERPUD2,KIAA0895,SEPT7,TBX20"
TCGA.AA.3861.01A	7	35242005	55991250	860	0.1534	NEUTRAL	NA	87	"ABCA13,ADCY1,AEBP1,AMPH,ANLN,AOAH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CDK13,COA1,COBL,DBNL,DDC,DDX56,EEPD1,EGFR,ELMO1,EPDR1,FIGNL1,GCK,GLI3,GPR141,GRB10,H2AFV,HECW1,HERPUD2,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,KIAA0895,LANCL2,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SEC61G,SEPT14,SEPT7,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,SUN3,TARP,TBRG4,TBX20,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF713,ZPBP"
TCGA.AG.4009.01A	7	35271073	35293055	6	-0.2226	NEUTRAL	NA	1	TBX20
TCGA.AA.A010.01A	7	35673248	36366322	28	0.2974	NEUTRAL	NA	4	"EEPD1,HERPUD2,KIAA0895,SEPT7"
TCGA.AG.A01W.01A	7	35885912	42938182	254	0.2397	NEUTRAL	NA	22	"AMPH,ANLN,AOAH,CDK13,EEPD1,ELMO1,EPDR1,GLI3,GPR141,INHBA,KIAA0895,MPLKIP,NME8,POU6F2,RALA,SEPT7,SFRP4,STARD3NL,SUGCT,TARP,VPS41,YAE1D1"
TCGA.DM.A28M.01A	7	35925377	63721252	938	0.1853	NEUTRAL	NA	98	"ABCA13,ADCY1,AEBP1,AMPH,ANLN,AOAH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EEPD1,EGFR,ELMO1,EPDR1,FIGNL1,GBAS,GCK,GLI3,GPR141,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,KIAA0895,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SEPT7,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,SUMF2,SUN3,TARP,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF479,ZNF679,ZNF713,ZNF716,ZNF727,ZNF735,ZPBP"
TCGA.AA.3509.01A	7	36193886	48287809	669	-0.0485	NEUTRAL	NA	68	"ABCA13,ADCY1,AEBP1,AMPH,ANLN,AOAH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,CAMK2B,CCM2,CDK13,COA1,DBNL,DDX56,EEPD1,ELMO1,EPDR1,GCK,GLI3,GPR141,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,INHBA,KIAA0895,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,SUN3,TARP,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VPS41,YAE1D1,YKT6,ZMIZ2"
TCGA.AZ.4684.01A	7	36193886	48287809	669	0.3447	NEUTRAL	NA	68	"ABCA13,ADCY1,AEBP1,AMPH,ANLN,AOAH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,CAMK2B,CCM2,CDK13,COA1,DBNL,DDX56,EEPD1,ELMO1,EPDR1,GCK,GLI3,GPR141,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,INHBA,KIAA0895,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,SUN3,TARP,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VPS41,YAE1D1,YKT6,ZMIZ2"
TCGA.AG.4009.01A	7	36396504	36445753	6	0.0287	NEUTRAL	NA	2	"ANLN,KIAA0895"
TCGA.AA.A00D.01A	7	36466478	37924707	58	-0.087	NEUTRAL	NA	5	"ANLN,AOAH,ELMO1,GPR141,NME8"
TCGA.AA.3930.01A	7	36698719	44260165	314	0.0505	NEUTRAL	NA	39	"AEBP1,AMPH,AOAH,BLVRA,C7orf25,CAMK2B,CDK13,COA1,DBNL,ELMO1,EPDR1,GCK,GLI3,GPR141,HECW1,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,NME8,PGAM2,POLD2,POLM,POU6F2,PSMA2,RALA,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,TARP,UBE2D4,URGCP,URGCP-MRPS24,VPS41,YAE1D1,YKT6"
TCGA.AA.A010.01A	7	36726251	37779969	26	-0.1034	NEUTRAL	NA	2	"AOAH,ELMO1"
TCGA.AA.A02K.01A	7	37382160	37907277	10	-0.2148	NEUTRAL	NA	3	"ELMO1,GPR141,NME8"
TCGA.AG.3902	7	37659499	38290713	240	0.0008	NEUTRAL	NA	5	"EPDR1,GPR141,NME8,SFRP4,STARD3NL"
TCGA.AA.3811	7	37666870	37929693	83	0.128	NEUTRAL	NA	2	"GPR141,NME8"
TCGA.AA.3844	7	37675571	37927778	80	0.2964	NEUTRAL	NA	2	"GPR141,NME8"
TCGA.AA.3867	7	37675571	47167921	3112	0.202	NEUTRAL	NA	54	"ADCY1,AEBP1,AMPH,BLVRA,C7orf25,CAMK2B,CCM2,CDK13,COA1,DBNL,DDX56,EPDR1,GCK,GLI3,GPR141,H2AFV,HECW1,IGFBP1,IGFBP3,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NUDCD3,OGDH,PGAM2,POLD2,POLM,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,TARP,TBRG4,TMED4,UBE2D4,URGCP,URGCP-MRPS24,VPS41,YAE1D1,YKT6,ZMIZ2"
TCGA.AZ.6606	7	37763132	159119219	31821	-0.0058	NEUTRAL	NA	684	Too-Many
TCGA.AA.3488	7	37801823	113884793	19099	0.321	NEUTRAL	NA	404	Too-Many
TCGA.AA.A02K.01A	7	37916398	44611905	341	0.2395	NEUTRAL	NA	39	"AEBP1,AMPH,BLVRA,C7orf25,CAMK2B,CDK13,COA1,DBNL,DDX56,EPDR1,GCK,GLI3,HECW1,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,NME8,NPC1L1,NUDCD3,PGAM2,POLD2,POLM,POU6F2,PSMA2,RALA,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,TARP,UBE2D4,URGCP,URGCP-MRPS24,VPS41,YAE1D1,YKT6"
TCGA.AA.3811	7	37934895	38191647	128	0.2384	NEUTRAL	NA	3	"EPDR1,NME8,SFRP4"
TCGA.AA.3844	7	37934895	38290713	150	0.3093	NEUTRAL	NA	4	"EPDR1,NME8,SFRP4,STARD3NL"
TCGA.AA.A010.01A	7	37951690	43916234	196	0.3252	NEUTRAL	NA	24	"AMPH,BLVRA,C7orf25,CDK13,COA1,EPDR1,GLI3,HECW1,INHBA,MPLKIP,MRPL32,MRPS24,POU6F2,PSMA2,RALA,SFRP4,STARD3NL,STK17A,SUGCT,TARP,URGCP,URGCP-MRPS24,VPS41,YAE1D1"
TCGA.AA.A00D.01A	7	37955647	39503734	68	-0.1213	NEUTRAL	NA	7	"AMPH,EPDR1,POU6F2,SFRP4,STARD3NL,TARP,VPS41"
TCGA.AA.A00F.01A	7	37955647	47933425	396	0.3386	NEUTRAL	NA	56	"ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf65,C7orf69,CAMK2B,CCM2,CDK13,COA1,DBNL,DDX56,EPDR1,GCK,GLI3,H2AFV,HECW1,IGFBP1,IGFBP3,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,TARP,TBRG4,TMED4,TNS3,UBE2D4,URGCP,URGCP-MRPS24,VPS41,YAE1D1,YKT6,ZMIZ2"
TCGA.AF.2689	7	38287926	38371710	40	-0.221	NEUTRAL	NA	1	TARP
TCGA.AA.3518	7	38303119	38358727	33	-0.491	NEUTRAL	NA	1	TARP
TCGA.AY.5543	7	38323689	57620766	6249	0.3758	NEUTRAL	NA	83	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GBAS,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.AG.3726	7	38339603	64769030	6649	0.0029	NEUTRAL	NA	93	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EGFR,ERV3-1,FIGNL1,GBAS,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZPBP"
TCGA.AG.3581	7	38343955	159119219	31665	0.3785	NEUTRAL	NA	678	Too-Many
TCGA.AA.3860	7	38358226	76490440	8852	0.0294	NEUTRAL	NA	159	Too-Many
TCGA.AA.3529	7	38358226	98502543	15038	0.3543	NEUTRAL	NA	247	Too-Many
TCGA.AG.3902	7	38358226	159119219	31569	0.0048	NEUTRAL	NA	678	Too-Many
TCGA.AA.3518	7	38358955	89819448	12787	-0.0063	NEUTRAL	NA	193	Too-Many
TCGA.AA.3866	7	38366511	99388999	15183	0.1273	NEUTRAL	NA	268	Too-Many
TCGA.AG.3882	7	38370791	44177411	1895	0.3256	NEUTRAL	NA	27	"AEBP1,AMPH,BLVRA,C7orf25,CDK13,COA1,DBNL,GLI3,HECW1,INHBA,MPLKIP,MRPL32,MRPS24,PGAM2,POLD2,POLM,POU6F2,PSMA2,RALA,SPDYE1,STK17A,SUGCT,UBE2D4,URGCP,URGCP-MRPS24,VPS41,YAE1D1"
TCGA.AA.3977	7	38370791	54646232	5556	0.0264	NEUTRAL	NA	67	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CDK13,COA1,COBL,DBNL,DDC,DDX56,FIGNL1,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SPDYE1,STK17A,SUGCT,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZPBP"
TCGA.AA.3989	7	38370791	62386044	6296	0.0443	NEUTRAL	NA	83	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GBAS,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.AA.3684	7	38370791	123797640	21051	0.1998	NEUTRAL	NA	436	Too-Many
TCGA.AA.3692	7	38370791	142338468	26487	0.1519	NEUTRAL	NA	555	Too-Many
TCGA.AG.3901	7	38370791	142338468	26408	0.0211	NEUTRAL	NA	555	Too-Many
TCGA.AG.3883	7	38370791	159116964	31661	0.0572	NEUTRAL	NA	678	Too-Many
TCGA.AA.3548	7	38370791	159119219	31660	0.0879	NEUTRAL	NA	678	Too-Many
TCGA.AA.3819	7	38370791	159119219	31665	-0.0001	NEUTRAL	NA	678	Too-Many
TCGA.AA.3869	7	38370791	159119219	31624	0.3254	NEUTRAL	NA	678	Too-Many
TCGA.AA.3875	7	38370791	159119219	31671	0.162	NEUTRAL	NA	678	Too-Many
TCGA.AA.3971	7	38370791	159119219	31641	0.3346	NEUTRAL	NA	678	Too-Many
TCGA.AF.2689	7	38377924	72877165	8513	0.2457	NEUTRAL	NA	114	Too-Many
TCGA.AA.3673	7	38386790	125652802	21552	0	NEUTRAL	NA	439	Too-Many
TCGA.AA.3966	7	38398046	38652686	139	0.0772	NEUTRAL	NA	1	AMPH
TCGA.AG.3591	7	38398046	55899495	6000	0.156	NEUTRAL	NA	72	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CDK13,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZPBP"
TCGA.AA.3973	7	38398046	76216383	8802	0.056	NEUTRAL	NA	158	Too-Many
TCGA.AA.3556	7	38398046	82446017	10792	0.0222	NEUTRAL	NA	174	Too-Many
TCGA.AA.3854	7	38398046	104636899	16300	0.1166	NEUTRAL	NA	362	Too-Many
TCGA.AG.3727	7	38398046	117259945	19590	-0.003	NEUTRAL	NA	411	Too-Many
TCGA.AA.3675	7	38398046	142338189	26473	0.0069	NEUTRAL	NA	555	Too-Many
TCGA.AA.3831	7	38398046	159119219	31618	0.0134	NEUTRAL	NA	678	Too-Many
TCGA.AA.3695	7	38402495	76493049	8846	0.2929	NEUTRAL	NA	159	Too-Many
TCGA.AA.3848	7	38402495	149636503	28575	0.026	NEUTRAL	NA	615	Too-Many
TCGA.AA.3812	7	38404970	146425529	27496	0.2701	NEUTRAL	NA	598	Too-Many
TCGA.AA.3856	7	38408478	159119219	31660	0.2369	NEUTRAL	NA	678	Too-Many
TCGA.AA.3811	7	38424327	39057125	266	0.2384	NEUTRAL	NA	3	"AMPH,POU6F2,VPS41"
TCGA.AA.3844	7	38424327	43763568	1808	0.315	NEUTRAL	NA	16	"AMPH,C7orf25,CDK13,COA1,GLI3,HECW1,INHBA,MPLKIP,MRPL32,POU6F2,PSMA2,RALA,STK17A,SUGCT,VPS41,YAE1D1"
TCGA.AG.A008.01A	7	38424369	50467575	587	-0.2291	NEUTRAL	NA	61	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CDK13,COA1,DBNL,DDX56,GCK,GLI3,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SPDYE1,STK17A,SUGCT,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VPS41,VWC2,YAE1D1,YKT6,ZMIZ2,ZPBP"
TCGA.CI.6621	7	38624969	50112405	3715	0.0275	NEUTRAL	NA	59	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,CAMK2B,CCM2,CDK13,COA1,DBNL,DDX56,GCK,GLI3,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SPDYE1,STK17A,SUGCT,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VPS41,VWC2,YAE1D1,YKT6,ZMIZ2,ZPBP"
TCGA.AA.3966	7	38655757	38741625	25	0.262	NEUTRAL	NA	1	AMPH
TCGA.AA.3811	7	39057740	39272429	71	-0.1051	NEUTRAL	NA	1	POU6F2
TCGA.A6.3808.01A	7	39243780	43990147	136	0.0528	NEUTRAL	NA	19	"BLVRA,C7orf25,CDK13,COA1,GLI3,HECW1,INHBA,MPLKIP,MRPL32,MRPS24,POU6F2,PSMA2,RALA,STK17A,SUGCT,UBE2D4,URGCP,URGCP-MRPS24,YAE1D1"
TCGA.AA.3811	7	39274937	41623453	688	0.2491	NEUTRAL	NA	6	"CDK13,MPLKIP,POU6F2,RALA,SUGCT,YAE1D1"
TCGA.AA.A00D.01A	7	39605966	56120070	485	0.212	NEUTRAL	NA	74	"ABCA13,ADCY1,AEBP1,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GBAS,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POM121L12,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF713,ZPBP"
TCGA.AA.A01Q.01A	7	39610056	44046989	88	0.1852	NEUTRAL	NA	19	"BLVRA,C7orf25,CDK13,COA1,GLI3,HECW1,INHBA,MPLKIP,MRPL32,MRPS24,PSMA2,RALA,SPDYE1,STK17A,SUGCT,UBE2D4,URGCP,URGCP-MRPS24,YAE1D1"
TCGA.F4.6459	7	40118064	40459728	73	-0.0569	NEUTRAL	NA	3	"CDK13,MPLKIP,SUGCT"
TCGA.AA.A01Z	7	40473003	41497193	334	-0.0007	NEUTRAL	NA	1	SUGCT
TCGA.D5.6932	7	41039299	41525591	205	-0.1712	NEUTRAL	NA	0	None
TCGA.AA.3811	7	41633766	43085253	541	0.2041	NEUTRAL	NA	5	"C7orf25,GLI3,INHBA,MRPL32,PSMA2"
TCGA.D5.6932	7	41684263	159119219	30501	-0.2007	NEUTRAL	NA	670	Too-Many
TCGA.AG.A032.01A	7	41739548	158935086	5521	0.2317	NEUTRAL	NA	670	Too-Many
TCGA.AA.3955	7	41899021	41901080	5	-0.4328	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	7	42003901	42018146	7	-0.1286	NEUTRAL	NA	1	GLI3
TCGA.AG.3893	7	42088469	159119219	30159	0.2703	NEUTRAL	NA	669	Too-Many
TCGA.AG.4009.01A	7	42262682	42974507	11	0.0805	NEUTRAL	NA	4	"C7orf25,GLI3,MRPL32,PSMA2"
TCGA.CK.5914.01A	7	42262682	43495849	25	-0.2233	NEUTRAL	NA	5	"C7orf25,GLI3,HECW1,MRPL32,PSMA2"
TCGA.AG.A01N.01A	7	42262682	76058800	1140	0.1566	NEUTRAL	NA	147	Too-Many
TCGA.AA.3955	7	42374401	57620766	4914	0.3619	NEUTRAL	NA	73	"ABCA13,ADCY1,AEBP1,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GBAS,GCK,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,LANCL2,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,PPIA,PSMA2,PSPH,PURB,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VSTM2A,VWC2,YKT6,ZMIZ2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.WS.AB45	7	42756694	159119219	30145	0.1678	NEUTRAL	NA	668	Too-Many
TCGA.AG.A01W.01A	7	43249947	43402875	5	0.2853	NEUTRAL	NA	1	HECW1
TCGA.AG.A01W.01A	7	43462375	43883530	39	0.3111	NEUTRAL	NA	4	"BLVRA,COA1,HECW1,STK17A"
TCGA.AG.3891.01A	7	43840013	44089753	17	0.3083	NEUTRAL	NA	7	"BLVRA,DBNL,MRPS24,SPDYE1,UBE2D4,URGCP,URGCP-MRPS24"
TCGA.AA.A029.01A	7	43846524	76885603	1013	0.044	NEUTRAL	NA	145	Too-Many
TCGA.AG.A01W.01A	7	43887716	44058941	15	-0.2027	NEUTRAL	NA	5	"MRPS24,SPDYE1,UBE2D4,URGCP,URGCP-MRPS24"
TCGA.AG.A00C.01A	7	43906270	44190507	55	0.3154	NEUTRAL	NA	12	"AEBP1,DBNL,GCK,MRPS24,MYL7,PGAM2,POLD2,POLM,SPDYE1,UBE2D4,URGCP,URGCP-MRPS24"
TCGA.AA.A00N.01A	7	43906270	44240683	74	-0.4478	NEUTRAL	NA	13	"AEBP1,DBNL,GCK,MRPS24,MYL7,PGAM2,POLD2,POLM,SPDYE1,UBE2D4,URGCP,URGCP-MRPS24,YKT6"
TCGA.AG.3909.01A	7	43906270	44286657	84	-0.1256	NEUTRAL	NA	14	"AEBP1,CAMK2B,DBNL,GCK,MRPS24,MYL7,PGAM2,POLD2,POLM,SPDYE1,UBE2D4,URGCP,URGCP-MRPS24,YKT6"
TCGA.AA.A010.01A	7	43990147	44144226	26	0.0938	NEUTRAL	NA	6	"AEBP1,DBNL,PGAM2,POLM,SPDYE1,UBE2D4"
TCGA.AA.A02E.01A	7	44046989	76255250	1028	-0.0964	NEUTRAL	NA	138	Too-Many
TCGA.AA.A01Q.01A	7	44084292	44144226	22	-0.5113	NEUTRAL	NA	4	"AEBP1,DBNL,PGAM2,POLM"
TCGA.CK.5914.01A	7	44089753	44184688	46	-0.1489	NEUTRAL	NA	7	"AEBP1,DBNL,GCK,MYL7,PGAM2,POLD2,POLM"
TCGA.AG.3891.01A	7	44091382	44251766	60	-0.0959	NEUTRAL	NA	8	"AEBP1,DBNL,GCK,MYL7,PGAM2,POLD2,POLM,YKT6"
TCGA.AG.4009.01A	7	44146104	44197592	32	-0.0922	NEUTRAL	NA	4	"AEBP1,GCK,MYL7,POLD2"
TCGA.AA.A01Q.01A	7	44155317	44251766	30	-0.4907	NEUTRAL	NA	4	"GCK,MYL7,POLD2,YKT6"
TCGA.AA.A010.01A	7	44178481	44302547	42	-0.106	NEUTRAL	NA	4	"CAMK2B,GCK,MYL7,YKT6"
TCGA.AG.A00C.01A	7	44191843	44608458	47	0.021	NEUTRAL	NA	6	"CAMK2B,DDX56,GCK,NPC1L1,NUDCD3,YKT6"
TCGA.AG.3882	7	44203005	77609653	7172	0.3011	NEUTRAL	NA	138	Too-Many
TCGA.CK.5914.01A	7	44244132	44364891	26	-0.2832	NEUTRAL	NA	2	"CAMK2B,YKT6"
TCGA.AA.A00N.01A	7	44259634	44364891	20	-0.4037	NEUTRAL	NA	1	CAMK2B
TCGA.AG.3891.01A	7	44282110	44607680	31	-0.0408	NEUTRAL	NA	4	"CAMK2B,DDX56,NPC1L1,NUDCD3"
TCGA.A6.3808.01A	7	44286657	44747164	63	0.0939	NEUTRAL	NA	6	"CAMK2B,DDX56,NPC1L1,NUDCD3,OGDH,TMED4"
TCGA.AG.3906.01A	7	44294072	44747164	57	-0.0799	NEUTRAL	NA	6	"CAMK2B,DDX56,NPC1L1,NUDCD3,OGDH,TMED4"
TCGA.AA.3930.01A	7	44298400	44733373	50	0.2627	NEUTRAL	NA	6	"CAMK2B,DDX56,NPC1L1,NUDCD3,OGDH,TMED4"
TCGA.AA.A01Q.01A	7	44425558	44733373	46	0.3623	NEUTRAL	NA	5	"DDX56,NPC1L1,NUDCD3,OGDH,TMED4"
TCGA.AG.A01W.01A	7	44528160	44576831	18	-0.1631	NEUTRAL	NA	2	"NPC1L1,NUDCD3"
TCGA.AG.A01W.01A	7	44588121	44713668	21	0.2887	NEUTRAL	NA	3	"DDX56,OGDH,TMED4"
TCGA.CK.5914.01A	7	44605989	44663909	14	-0.1852	NEUTRAL	NA	3	"DDX56,OGDH,TMED4"
TCGA.AA.3815.01A	7	44607680	44798833	36	0.3305	NEUTRAL	NA	4	"DDX56,OGDH,TMED4,ZMIZ2"
TCGA.AA.A00N.01A	7	44608458	44663909	12	-0.357	NEUTRAL	NA	3	"DDX56,OGDH,TMED4"
TCGA.AA.A01K.01A	7	44612457	50771465	304	0.0386	NEUTRAL	NA	31	"ABCA13,ADCY1,C7orf57,C7orf65,C7orf69,C7orf72,CCM2,DDC,DDX56,FIGNL1,GRB10,H2AFV,HUS1,IGFBP1,IGFBP3,IKZF1,MYO1G,NACAD,OGDH,PKD1L1,PPIA,PURB,RAMP3,SUN3,TBRG4,TMED4,TNS3,UPP1,VWC2,ZMIZ2,ZPBP"
TCGA.AG.3891.01A	7	44620642	44741082	20	0.0254	NEUTRAL	NA	2	"OGDH,TMED4"
TCGA.AA.A02K.01A	7	44663929	65479557	572	0.2507	NEUTRAL	NA	61	"ABCA13,ADCY1,C7orf57,C7orf65,C7orf69,C7orf72,CCM2,CCT6A,CHCHD2,COBL,DDC,EGFR,ERV3-1,FIGNL1,GBAS,GRB10,GUSB,H2AFV,HUS1,IGFBP1,IGFBP3,IKZF1,LANCL2,MRPS17,MYO1G,NACAD,NUPR1L,OGDH,PHKG1,PKD1L1,POM121L12,PPIA,PSPH,PURB,RAMP3,SEC61G,SEPT14,SUMF2,SUN3,TBRG4,TNS3,UPP1,VKORC1L1,VOPP1,VSTM2A,VWC2,ZMIZ2,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZPBP"
TCGA.AG.A00C.01A	7	44684894	44747164	19	-0.3316	NEUTRAL	NA	1	OGDH
TCGA.AA.A01C.01A	7	44715542	81399147	1149	0.205	NEUTRAL	NA	137	Too-Many
TCGA.AA.3930.01A	7	44733986	44801001	17	-0.1623	NEUTRAL	NA	2	"OGDH,ZMIZ2"
TCGA.AA.A01Q.01A	7	44733986	56119504	303	-0.0095	NEUTRAL	NA	42	"ABCA13,ADCY1,C7orf57,C7orf65,C7orf69,C7orf72,CCM2,CCT6A,COBL,DDC,EGFR,FIGNL1,GBAS,GRB10,H2AFV,HUS1,IGFBP1,IGFBP3,IKZF1,LANCL2,MRPS17,MYO1G,NACAD,OGDH,PKD1L1,POM121L12,PPIA,PSPH,PURB,RAMP3,SEC61G,SEPT14,SUN3,TBRG4,TNS3,UPP1,VOPP1,VSTM2A,VWC2,ZMIZ2,ZNF713,ZPBP"
TCGA.CK.5914.01A	7	44735587	47439966	122	0.0318	NEUTRAL	NA	14	"ADCY1,CCM2,H2AFV,IGFBP1,IGFBP3,MYO1G,NACAD,OGDH,PPIA,PURB,RAMP3,TBRG4,TNS3,ZMIZ2"
TCGA.AG.A01W.01A	7	44770488	44890488	14	0.069	NEUTRAL	NA	3	"H2AFV,PPIA,ZMIZ2"
TCGA.AG.4009.01A	7	44795772	44807066	14	-0.395	NEUTRAL	NA	1	ZMIZ2
TCGA.AG.3909.01A	7	44795772	45014723	36	0.0303	NEUTRAL	NA	5	"H2AFV,MYO1G,PPIA,PURB,ZMIZ2"
TCGA.AG.A00C.01A	7	44795772	45016445	38	0.3576	NEUTRAL	NA	5	"H2AFV,MYO1G,PPIA,PURB,ZMIZ2"
TCGA.AA.3815.01A	7	44799692	94026964	1820	-0.0282	NEUTRAL	NA	184	Too-Many
TCGA.AA.3930.01A	7	44802433	44875081	13	0.3273	NEUTRAL	NA	3	"H2AFV,PPIA,ZMIZ2"
TCGA.AG.A01L.01A	7	44803953	45115349	37	0.2442	NEUTRAL	NA	6	"CCM2,H2AFV,MYO1G,PPIA,PURB,ZMIZ2"
TCGA.AG.3906.01A	7	44804894	44923987	13	0.3524	NEUTRAL	NA	4	"H2AFV,PPIA,PURB,ZMIZ2"
TCGA.AA.A010.01A	7	44836280	44869652	5	0.0387	NEUTRAL	NA	2	"H2AFV,PPIA"
TCGA.AZ.4308	7	44840863	97969139	12907	0.0216	NEUTRAL	NA	207	Too-Many
TCGA.AG.4009.01A	7	44875081	45018413	20	0.1843	NEUTRAL	NA	3	"H2AFV,MYO1G,PURB"
TCGA.AA.3930.01A	7	44880470	55540501	375	-0.0735	NEUTRAL	NA	33	"ABCA13,ADCY1,C7orf57,C7orf65,C7orf69,C7orf72,CCM2,COBL,DDC,EGFR,FIGNL1,GRB10,H2AFV,HUS1,IGFBP1,IGFBP3,IKZF1,LANCL2,MYO1G,NACAD,PKD1L1,POM121L12,PURB,RAMP3,SEC61G,SUN3,TBRG4,TNS3,UPP1,VOPP1,VSTM2A,VWC2,ZPBP"
TCGA.AA.A00N.01A	7	44923987	45148394	48	-0.2408	NEUTRAL	NA	5	"CCM2,MYO1G,NACAD,PURB,TBRG4"
TCGA.AG.3891.01A	7	45008956	54612283	300	-0.1923	NEUTRAL	NA	27	"ABCA13,ADCY1,C7orf57,C7orf65,C7orf69,C7orf72,CCM2,COBL,DDC,FIGNL1,GRB10,HUS1,IGFBP1,IGFBP3,IKZF1,MYO1G,NACAD,PKD1L1,POM121L12,RAMP3,SUN3,TBRG4,TNS3,UPP1,VSTM2A,VWC2,ZPBP"
TCGA.AG.3906.01A	7	45009257	55270159	331	-0.0628	NEUTRAL	NA	29	"ABCA13,ADCY1,C7orf57,C7orf65,C7orf69,C7orf72,CCM2,COBL,DDC,EGFR,FIGNL1,GRB10,HUS1,IGFBP1,IGFBP3,IKZF1,MYO1G,NACAD,PKD1L1,POM121L12,RAMP3,SEC61G,SUN3,TBRG4,TNS3,UPP1,VSTM2A,VWC2,ZPBP"
TCGA.AG.A00C.01A	7	45018413	45753301	39	-0.1089	NEUTRAL	NA	6	"ADCY1,CCM2,MYO1G,NACAD,RAMP3,TBRG4"
TCGA.AG.A01W.01A	7	45044359	45081864	9	-0.0506	NEUTRAL	NA	1	CCM2
TCGA.AA.A010.01A	7	45077811	45662180	32	-0.0085	NEUTRAL	NA	5	"ADCY1,CCM2,NACAD,RAMP3,TBRG4"
TCGA.AA.3664	7	45105116	45131852	6	0.2831	NEUTRAL	NA	2	"CCM2,NACAD"
TCGA.AG.A01L.01A	7	45148394	98498199	1904	0.1697	NEUTRAL	NA	204	Too-Many
TCGA.A6.3808.01A	7	45216876	56079405	351	0.1035	NEUTRAL	NA	32	"ABCA13,ADCY1,C7orf57,C7orf65,C7orf69,C7orf72,COBL,DDC,EGFR,FIGNL1,GBAS,GRB10,HUS1,IGFBP1,IGFBP3,IKZF1,LANCL2,MRPS17,PKD1L1,POM121L12,PSPH,RAMP3,SEC61G,SEPT14,SUN3,TNS3,UPP1,VOPP1,VSTM2A,VWC2,ZNF713,ZPBP"
TCGA.AM.5820	7	45294716	45672822	98	-0.4118	NEUTRAL	NA	1	ADCY1
TCGA.AA.3982	7	45679020	46124790	119	0.3056	NEUTRAL	NA	3	"ADCY1,IGFBP1,IGFBP3"
TCGA.AG.3909.01A	7	45744070	45753301	4	0.2121	NEUTRAL	NA	1	ADCY1
TCGA.AA.A01Z	7	45890919	52815075	2746	3.00E-04	NEUTRAL	NA	19	"ABCA13,C7orf57,C7orf65,C7orf69,C7orf72,COBL,DDC,FIGNL1,GRB10,HUS1,IGFBP1,IGFBP3,IKZF1,PKD1L1,SUN3,TNS3,UPP1,VWC2,ZPBP"
TCGA.AG.4009.01A	7	45930108	45956775	6	-0.3811	NEUTRAL	NA	2	"IGFBP1,IGFBP3"
TCGA.AA.A010.01A	7	45930108	47333299	12	-0.2125	NEUTRAL	NA	3	"IGFBP1,IGFBP3,TNS3"
TCGA.AA.3811	7	45933079	47217922	577	0.2051	NEUTRAL	NA	2	"IGFBP1,IGFBP3"
TCGA.AA.3844	7	45968086	47119984	523	0.2801	NEUTRAL	NA	0	None
TCGA.AA.3982	7	46133055	46166555	13	-0.4204	NEUTRAL	NA	0	None
TCGA.AA.3982	7	46166930	46268516	71	0.2835	NEUTRAL	NA	0	None
TCGA.AA.3982	7	46284961	46742932	174	0.0729	NEUTRAL	NA	0	None
TCGA.AA.3982	7	46752879	47119842	189	0.1945	NEUTRAL	NA	0	None
TCGA.AA.3844	7	47164144	47184107	6	-0.3161	NEUTRAL	NA	0	None
TCGA.AA.3867	7	47184107	48293103	396	0.3201	NEUTRAL	NA	9	"ABCA13,C7orf57,C7orf65,C7orf69,HUS1,PKD1L1,SUN3,TNS3,UPP1"
TCGA.AG.A01W.01A	7	47298017	47835507	39	0.1223	NEUTRAL	NA	4	"C7orf65,C7orf69,PKD1L1,TNS3"
TCGA.AG.4009.01A	7	47317637	47323283	3	0.3639	NEUTRAL	NA	1	TNS3
TCGA.AG.3909.01A	7	47317637	47385778	12	0.3307	NEUTRAL	NA	1	TNS3
TCGA.AG.A00C.01A	7	47317637	47933425	70	-0.0968	NEUTRAL	NA	4	"C7orf65,C7orf69,PKD1L1,TNS3"
TCGA.A6.6648	7	47555648	47598605	17	-0.1541	NEUTRAL	NA	1	TNS3
TCGA.A6.6648	7	47601081	154860409	27222	0.2278	NEUTRAL	NA	612	Too-Many
TCGA.AA.A010.01A	7	47814683	47835536	3	-0.3163	NEUTRAL	NA	2	"C7orf69,PKD1L1"
TCGA.AG.A00C.01A	7	47937536	48269400	50	0.2377	NEUTRAL	NA	6	"ABCA13,C7orf57,HUS1,PKD1L1,SUN3,UPP1"
TCGA.CK.5914.01A	7	47944712	47982951	10	-0.1461	NEUTRAL	NA	1	PKD1L1
TCGA.AA.A010.01A	7	47945390	50547427	139	0.1147	NEUTRAL	NA	12	"ABCA13,C7orf57,C7orf72,DDC,FIGNL1,HUS1,IKZF1,PKD1L1,SUN3,UPP1,VWC2,ZPBP"
TCGA.AG.4009.01A	7	47954980	48008769	11	-0.1387	NEUTRAL	NA	2	"HUS1,PKD1L1"
TCGA.CK.5914.01A	7	48045527	48260793	24	0.0377	NEUTRAL	NA	4	"ABCA13,C7orf57,SUN3,UPP1"
TCGA.AG.3909.01A	7	48045527	48266832	25	0.2668	NEUTRAL	NA	4	"ABCA13,C7orf57,SUN3,UPP1"
TCGA.AA.A00F.01A	7	48146926	50097554	19	0.0806	NEUTRAL	NA	4	"ABCA13,UPP1,VWC2,ZPBP"
TCGA.AA.3811	7	48170880	50027011	621	0.1559	NEUTRAL	NA	3	"ABCA13,VWC2,ZPBP"
TCGA.AA.3982	7	48170880	50028276	624	0.0365	NEUTRAL	NA	3	"ABCA13,VWC2,ZPBP"
TCGA.AA.3844	7	48199098	50351603	719	0.2238	NEUTRAL	NA	5	"ABCA13,C7orf72,IKZF1,VWC2,ZPBP"
TCGA.G4.6294	7	48244413	53587985	2043	-0.0328	NEUTRAL	NA	10	"ABCA13,C7orf72,COBL,DDC,FIGNL1,GRB10,IKZF1,POM121L12,VWC2,ZPBP"
TCGA.AF.6136	7	48265005	159119219	28382	0.2133	NEUTRAL	NA	622	Too-Many
TCGA.AG.A00C.01A	7	48273583	50450191	70	-0.1676	NEUTRAL	NA	5	"ABCA13,C7orf72,IKZF1,VWC2,ZPBP"
TCGA.AA.3867	7	48308228	57565523	3009	0.1372	NEUTRAL	NA	27	"ABCA13,C7orf72,CCT6A,CHCHD2,COBL,DDC,EGFR,FIGNL1,GBAS,GRB10,IKZF1,LANCL2,MRPS17,NUPR1L,PHKG1,POM121L12,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,VWC2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.AA.A00Z.01A	7	48311352	154988572	85	-0.261	NEUTRAL	NA	605	Too-Many
TCGA.CK.5914.01A	7	48313697	48374972	14	0.146	NEUTRAL	NA	1	ABCA13
TCGA.AA.3509.01A	7	48319251	48559644	36	-0.082	NEUTRAL	NA	1	ABCA13
TCGA.CK.5914.01A	7	48451938	48522617	7	0.1636	NEUTRAL	NA	1	ABCA13
TCGA.AA.A00N.01A	7	48467311	48528796	7	-0.1008	NEUTRAL	NA	1	ABCA13
TCGA.AA.3850	7	48586684	50120779	503	-0.33245	NEUTRAL	NA	3	"ABCA13,VWC2,ZPBP"
TCGA.AA.3495	7	48606879	49779617	414	0.3265	NEUTRAL	NA	1	ABCA13
TCGA.F5.6465	7	48687715	49116540	143	-0.5048	NEUTRAL	NA	0	None
TCGA.A6.6649	7	48776004	159119219	28251	0.109	NEUTRAL	NA	621	Too-Many
TCGA.F5.6465	7	49121113	56976079	2625	0.0144	NEUTRAL	NA	24	"C7orf72,CCT6A,CHCHD2,COBL,DDC,EGFR,FIGNL1,GBAS,GRB10,IKZF1,LANCL2,MRPS17,NUPR1L,PHKG1,POM121L12,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,VWC2,ZNF713,ZPBP"
TCGA.AA.3941	7	49234400	50120779	293	0.0966	NEUTRAL	NA	2	"VWC2,ZPBP"
TCGA.AA.3811	7	50034269	50143937	24	0.0809	NEUTRAL	NA	2	"C7orf72,ZPBP"
TCGA.AA.3982	7	50035644	51736013	678	0.3678	NEUTRAL	NA	7	"C7orf72,COBL,DDC,FIGNL1,GRB10,IKZF1,ZPBP"
TCGA.F5.6812	7	50040789	53805562	1501	-0.1065	NEUTRAL	NA	8	"C7orf72,COBL,DDC,FIGNL1,GRB10,IKZF1,POM121L12,ZPBP"
TCGA.AG.3909.01A	7	50121343	50455014	7	0.3422	NEUTRAL	NA	3	"C7orf72,IKZF1,ZPBP"
TCGA.CK.5914.01A	7	50121343	56119504	145	0.0805	NEUTRAL	NA	19	"C7orf72,CCT6A,COBL,DDC,EGFR,FIGNL1,GBAS,GRB10,IKZF1,LANCL2,MRPS17,POM121L12,PSPH,SEC61G,SEPT14,VOPP1,VSTM2A,ZNF713,ZPBP"
TCGA.AA.3850	7	50135199	50263559	61	0.26035	NEUTRAL	NA	1	C7orf72
TCGA.AZ.4684.01A	7	50173666	55874773	112	0.2427	NEUTRAL	NA	13	"C7orf72,COBL,DDC,EGFR,FIGNL1,GRB10,IKZF1,LANCL2,POM121L12,SEC61G,SEPT14,VOPP1,VSTM2A"
TCGA.AA.3509.01A	7	50175631	55565248	108	-0.1622	NEUTRAL	NA	12	"C7orf72,COBL,DDC,EGFR,FIGNL1,GRB10,IKZF1,LANCL2,POM121L12,SEC61G,VOPP1,VSTM2A"
TCGA.AA.3941	7	50269671	50300868	9	-0.4028	NEUTRAL	NA	0	None
TCGA.AA.3850	7	50305862	51730791	590	0.33125	NEUTRAL	NA	5	"COBL,DDC,FIGNL1,GRB10,IKZF1"
TCGA.AA.A02F.01A	7	50444199	75630161	592	-0.2298	NEUTRAL	NA	90	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,COBL,CRCP,DDC,DNAJC30,EGFR,EIF4H,ELN,ERV3-1,FIGNL1,FKBP6,FZD9,GATSL2,GBAS,GRB10,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,IKZF1,KCTD7,LANCL2,LAT2,LIMK1,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POM121L12,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEC61G,SEPT14,SPDYE5,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VKORC1L1,VOPP1,VPS37D,VSTM2A,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.A00O.01A	7	50450191	76941400	689	-0.2963	NEUTRAL	NA	102	Too-Many
TCGA.AG.3909.01A	7	50459400	50537720	7	-0.3437	NEUTRAL	NA	3	"DDC,FIGNL1,IKZF1"
TCGA.AG.A008.01A	7	50512963	50544235	6	0.1075	NEUTRAL	NA	2	"DDC,FIGNL1"
TCGA.AG.A00C.01A	7	50544235	55272949	77	-0.188	NEUTRAL	NA	7	"COBL,DDC,EGFR,GRB10,POM121L12,SEC61G,VSTM2A"
TCGA.AG.A008.01A	7	50547427	92158077	1374	-0.2264	NEUTRAL	NA	145	Too-Many
TCGA.AG.3909.01A	7	50663099	50694467	11	0.2061	NEUTRAL	NA	1	GRB10
TCGA.AG.A01J.01A	7	50680386	76021228	626	0.0089	NEUTRAL	NA	92	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,COBL,CRCP,DNAJC30,EGFR,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GBAS,GRB10,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LANCL2,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POM121L12,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEC61G,SEPT14,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VKORC1L1,VOPP1,VPS37D,VSTM2A,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.DM.A1HB	7	50739150	138445266	20928	-0.0121	NEUTRAL	NA	454	Too-Many
TCGA.AA.A01K.01A	7	50778492	75070643	545	-0.2743	NEUTRAL	NA	79	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,COBL,CRCP,DNAJC30,EGFR,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GBAS,GRB10,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,KCTD7,LANCL2,LAT2,LIMK1,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POM121L12,PSPH,RABGEF1,RFC2,SBDS,SEC61G,SEPT14,STX1A,SUMF2,TBL2,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VKORC1L1,VOPP1,VPS37D,VSTM2A,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.3844	7	50933369	51024117	28	0.2021	NEUTRAL	NA	0	None
TCGA.DM.A1D4	7	51099577	51345054	72	0.0105	NEUTRAL	NA	1	COBL
TCGA.AG.4009.01A	7	51203803	53103338	6	0.2879	NEUTRAL	NA	1	COBL
TCGA.AG.3909.01A	7	51261045	55242368	30	0.0401	NEUTRAL	NA	5	"COBL,EGFR,POM121L12,SEC61G,VSTM2A"
TCGA.AA.A017.01A	7	51261045	76903752	629	0.0684	NEUTRAL	NA	97	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,COBL,CRCP,DNAJC30,DTX2,EGFR,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GBAS,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LANCL2,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POM121L12,POMZP3,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEC61G,SEPT14,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VOPP1,VPS37D,VSTM2A,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AA.3941	7	51736013	52595312	370	0.2046	NEUTRAL	NA	0	None
TCGA.AA.3844	7	51736013	54651668	1063	0.1654	NEUTRAL	NA	2	"POM121L12,VSTM2A"
TCGA.AA.3850	7	51736013	54652510	1065	-0.35755	NEUTRAL	NA	2	"POM121L12,VSTM2A"
TCGA.AA.3982	7	51747537	54221253	948	0.0132	NEUTRAL	NA	1	POM121L12
TCGA.AA.3811	7	51924508	54253771	889	0.1017	NEUTRAL	NA	1	POM121L12
TCGA.AA.3561	7	52201058	159119219	26940	-0.0017	NEUTRAL	NA	613	Too-Many
TCGA.F4.6461	7	52505264	53260220	330	-0.3111	NEUTRAL	NA	1	POM121L12
TCGA.AA.3941	7	52607060	54657954	688	0.1068	NEUTRAL	NA	2	"POM121L12,VSTM2A"
TCGA.AA.3713	7	52990397	159119219	26569	0	NEUTRAL	NA	613	Too-Many
TCGA.AF.A56K	7	53070749	53074699	4	-0.3649	NEUTRAL	NA	0	None
TCGA.AA.3841	7	53105599	53187489	29	0.2009	NEUTRAL	NA	0	None
TCGA.F4.6461	7	53260330	102375278	10384	0.0198	NEUTRAL	NA	284	Too-Many
TCGA.DM.A1D4	7	53470556	53587985	29	-0.2064	NEUTRAL	NA	0	None
TCGA.D5.6923	7	54221841	117135211	14064	0.2414	NEUTRAL	NA	345	Too-Many
TCGA.AA.3982	7	54265058	54648405	91	0.0767	NEUTRAL	NA	1	VSTM2A
TCGA.AA.A010.01A	7	54610362	54820012	7	-0.4111	NEUTRAL	NA	2	"SEC61G,VSTM2A"
TCGA.AA.A00N.01A	7	54610362	55433678	39	-0.1201	NEUTRAL	NA	4	"EGFR,LANCL2,SEC61G,VSTM2A"
TCGA.AG.3891.01A	7	54636659	55227785	14	-0.0904	NEUTRAL	NA	3	"EGFR,SEC61G,VSTM2A"
TCGA.AA.3977	7	54652510	61074193	706	0.0847	NEUTRAL	NA	16	"CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,ZNF479,ZNF713,ZNF716"
TCGA.AA.3850	7	54657954	55084966	167	0.17295	NEUTRAL	NA	1	SEC61G
TCGA.AA.3982	7	54657954	57566929	674	0.3741	NEUTRAL	NA	16	"CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,ZNF479,ZNF713,ZNF716"
TCGA.A6.5661	7	54660257	76309667	3228	-0.3744	NEUTRAL	NA	92	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EGFR,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GBAS,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LANCL2,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POMZP3,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEC61G,SEPT14,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VOPP1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.EI.6514	7	54688843	54694833	3	-0.1611	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	7	54820012	55260396	25	0.378	NEUTRAL	NA	2	"EGFR,SEC61G"
TCGA.AA.A02H.01A	7	54820012	76903752	633	0.0413	NEUTRAL	NA	94	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EGFR,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GBAS,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LANCL2,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POMZP3,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEC61G,SEPT14,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VOPP1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AA.3941	7	54878744	55015346	41	0.3153	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	7	55177427	56034129	67	-0.149	NEUTRAL	NA	7	"EGFR,GBAS,LANCL2,MRPS17,SEPT14,VOPP1,ZNF713"
TCGA.AG.3891.01A	7	55229153	55459447	19	-0.4513	NEUTRAL	NA	2	"EGFR,LANCL2"
TCGA.A6.5665	7	55230839	76289032	2996	-0.3091	NEUTRAL	NA	91	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EGFR,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GBAS,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LANCL2,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POMZP3,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEPT14,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VOPP1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.A6.2672	7	55247587	76309667	2990	-0.3316	NEUTRAL	NA	91	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EGFR,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GBAS,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LANCL2,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POMZP3,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEPT14,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VOPP1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AA.A010.01A	7	55259405	55433678	9	-0.4367	NEUTRAL	NA	2	"EGFR,LANCL2"
TCGA.AG.4009.01A	7	55266370	55433678	7	-0.093	NEUTRAL	NA	2	"EGFR,LANCL2"
TCGA.AA.A004.01A	7	55272949	76054323	534	-0.0586	NEUTRAL	NA	88	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,EGFR,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GBAS,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LANCL2,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEPT14,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VKORC1L1,VOPP1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.A6.6654	7	55374826	57914384	398	-0.1092	NEUTRAL	NA	14	"CCT6A,CHCHD2,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,PSPH,SEPT14,SUMF2,VOPP1,ZNF479,ZNF713,ZNF716"
TCGA.AA.3966	7	55414985	118268047	13911	0.0666	NEUTRAL	NA	345	Too-Many
TCGA.AG.3909.01A	7	55459447	55498865	8	-0.2511	NEUTRAL	NA	1	LANCL2
TCGA.AG.A00C.01A	7	55459447	56120070	41	0.184	NEUTRAL	NA	8	"CCT6A,GBAS,LANCL2,MRPS17,PSPH,SEPT14,VOPP1,ZNF713"
TCGA.AG.3891.01A	7	55466087	55991250	22	0.142	NEUTRAL	NA	4	"LANCL2,SEPT14,VOPP1,ZNF713"
TCGA.AG.3906.01A	7	55492929	56007174	20	0.1378	NEUTRAL	NA	4	"LANCL2,SEPT14,VOPP1,ZNF713"
TCGA.AG.4009.01A	7	55492929	56088739	35	0.3651	NEUTRAL	NA	7	"GBAS,LANCL2,MRPS17,PSPH,SEPT14,VOPP1,ZNF713"
TCGA.AA.A00N.01A	7	55492929	56119504	36	0.0297	NEUTRAL	NA	8	"CCT6A,GBAS,LANCL2,MRPS17,PSPH,SEPT14,VOPP1,ZNF713"
TCGA.AA.3850	7	55675040	55717832	11	-0.20885	NEUTRAL	NA	0	None
TCGA.AZ.4684.01A	7	55886769	56129403	38	-0.2551	NEUTRAL	NA	6	"CCT6A,GBAS,MRPS17,PSPH,SEPT14,ZNF713"
TCGA.AA.A010.01A	7	55914200	56007174	7	-0.4985	NEUTRAL	NA	2	"SEPT14,ZNF713"
TCGA.AG.3591	7	55929538	57275832	156	-0.1638	NEUTRAL	NA	11	"CCT6A,CHCHD2,GBAS,MRPS17,NUPR1L,PHKG1,PSPH,SEPT14,SUMF2,ZNF479,ZNF713"
TCGA.AA.A00K.01A	7	55980296	77423250	596	0.2452	NEUTRAL	NA	93	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GBAS,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POMZP3,POR,PSPH,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AA.A010.01A	7	56062534	56119504	9	0.268	NEUTRAL	NA	3	"CCT6A,GBAS,PSPH"
TCGA.AG.A01W.01A	7	56075674	56109736	22	-0.3085	NEUTRAL	NA	1	PSPH
TCGA.AG.A01W.01A	7	56111961	56122089	8	0.3396	NEUTRAL	NA	2	"CCT6A,PSPH"
TCGA.CI.6621	7	56118292	72984299	2505	-0.0281	NEUTRAL	NA	41	"ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCT6A,CHCHD2,CRCP,ERV3-1,FKBP6,FZD9,GUSB,KCTD7,NSUN5,NUPR1L,PHKG1,POM121,PSPH,RABGEF1,SBDS,SUMF2,TBL2,TMEM248,TPST1,TRIM50,TYW1,TYW1B,VKORC1L1,WBSCR17,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AG.4009.01A	7	56120070	56130652	13	-0.3011	NEUTRAL	NA	1	CCT6A
TCGA.AA.A01Q.01A	7	56120070	56170511	31	-0.3721	NEUTRAL	NA	4	"CCT6A,CHCHD2,PHKG1,SUMF2"
TCGA.AA.3509.01A	7	56130336	57522149	30	-0.1225	NEUTRAL	NA	7	"CCT6A,CHCHD2,NUPR1L,PHKG1,SUMF2,ZNF479,ZNF716"
TCGA.AZ.4684.01A	7	56130336	57522149	30	0.1881	NEUTRAL	NA	7	"CCT6A,CHCHD2,NUPR1L,PHKG1,SUMF2,ZNF479,ZNF716"
TCGA.AA.A00D.01A	7	56130336	64004056	33	0.2905	NEUTRAL	NA	12	"CCT6A,CHCHD2,NUPR1L,PHKG1,SUMF2,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.A6.3808.01A	7	56130336	70236491	171	-0.3798	NEUTRAL	NA	29	"ASL,AUTS2,CCT6A,CHCHD2,CRCP,ERV3-1,GUSB,KCTD7,NUPR1L,PHKG1,RABGEF1,SBDS,SUMF2,TMEM248,TPST1,TYW1,VKORC1L1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.3930.01A	7	56130652	65547297	98	-0.018	NEUTRAL	NA	21	"ASL,CCT6A,CHCHD2,ERV3-1,GUSB,NUPR1L,PHKG1,SUMF2,VKORC1L1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.A010.01A	7	56131916	56142248	5	0.0533	NEUTRAL	NA	1	SUMF2
TCGA.AA.A00N.01A	7	56131916	63986727	49	0.1114	NEUTRAL	NA	11	"CHCHD2,NUPR1L,PHKG1,SUMF2,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.AG.A00C.01A	7	56131916	64023236	50	0.0751	NEUTRAL	NA	11	"CHCHD2,NUPR1L,PHKG1,SUMF2,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.AG.4009.01A	7	56136133	63982176	45	0.3704	NEUTRAL	NA	11	"CHCHD2,NUPR1L,PHKG1,SUMF2,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.AG.3891.01A	7	56140643	66240166	115	-0.0453	NEUTRAL	NA	24	"ASL,CHCHD2,CRCP,ERV3-1,GUSB,KCTD7,NUPR1L,PHKG1,RABGEF1,SUMF2,TPST1,VKORC1L1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AG.3906.01A	7	56141793	73030361	272	0.1182	NEUTRAL	NA	40	"ASL,AUTS2,BAZ1B,BCL7B,CALN1,CHCHD2,CRCP,ERV3-1,FKBP6,FZD9,GUSB,KCTD7,MLXIPL,NSUN5,NUPR1L,PHKG1,POM121,RABGEF1,SBDS,SUMF2,TBL2,TMEM248,TPST1,TRIM50,TYW1,TYW1B,VKORC1L1,WBSCR17,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.CK.5914.01A	7	56146010	56171868	12	-0.1576	NEUTRAL	NA	3	"CHCHD2,PHKG1,SUMF2"
TCGA.AG.3909.01A	7	56148708	56170511	9	-0.0475	NEUTRAL	NA	2	"CHCHD2,PHKG1"
TCGA.AG.A01W.01A	7	56151171	63446873	35	-0.3263	NEUTRAL	NA	5	"CHCHD2,NUPR1L,PHKG1,ZNF479,ZNF716"
TCGA.AG.A016.01A	7	56169457	63982176	30	-0.4176	NEUTRAL	NA	9	"CHCHD2,NUPR1L,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.AA.A01Q.01A	7	56171868	72298572	162	0.2133	NEUTRAL	NA	29	"ASL,AUTS2,CALN1,CHCHD2,CRCP,ERV3-1,GUSB,KCTD7,NUPR1L,RABGEF1,SBDS,TMEM248,TPST1,TYW1,TYW1B,VKORC1L1,WBSCR17,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.3850	7	56233715	56679151	72	0.13905	NEUTRAL	NA	0	None
TCGA.EI.6885	7	56479240	159119219	25510	0	NEUTRAL	NA	597	Too-Many
TCGA.AA.3811	7	56528990	77881529	3146	0.2136	NEUTRAL	NA	86	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AA.3850	7	56686872	57566929	138	0.21425	NEUTRAL	NA	2	"ZNF479,ZNF716"
TCGA.AG.A026	7	56714111	62111503	168	0.2873	NEUTRAL	NA	2	"ZNF479,ZNF716"
TCGA.AA.A010.01A	7	57187495	64441685	54	-0.2856	NEUTRAL	NA	11	"ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.AG.3591	7	57278823	62404705	141	0.1241	NEUTRAL	NA	1	ZNF716
TCGA.AA.3862.01A	7	57522725	72400431	187	0.3154	NEUTRAL	NA	27	"ASL,AUTS2,CALN1,CRCP,ERV3-1,GUSB,KCTD7,POM121,RABGEF1,SBDS,TMEM248,TPST1,TYW1,TYW1B,VKORC1L1,WBSCR17,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.3841	7	57537906	105597944	10307	0.3042	NEUTRAL	NA	284	Too-Many
TCGA.A6.2671	7	57537906	159119219	25376	0.0085	NEUTRAL	NA	595	Too-Many
TCGA.AA.3844	7	57566929	61074193	34	-0.059	NEUTRAL	NA	0	None
TCGA.AA.3867	7	57574568	63435236	132	-0.0387	NEUTRAL	NA	0	None
TCGA.AA.3850	7	57589802	57878852	25	-0.04145	NEUTRAL	NA	0	None
TCGA.AA.3941	7	57589802	61074193	29	-0.0147	NEUTRAL	NA	0	None
TCGA.A6.6782	7	57623578	159119219	25301	0.172	NEUTRAL	NA	595	Too-Many
TCGA.AA.3955	7	57623578	159119219	25378	-0.0054	NEUTRAL	NA	595	Too-Many
TCGA.AY.5543	7	57623578	159119219	25230	-0.007	NEUTRAL	NA	595	Too-Many
TCGA.F5.6465	7	57790661	137563433	18913	0.008	NEUTRAL	NA	429	Too-Many
TCGA.AA.A01Z	7	57914384	110849109	11895	0.0012	NEUTRAL	NA	308	Too-Many
TCGA.AZ.6608	7	58019982	159119219	25282	-0.0308	NEUTRAL	NA	595	Too-Many
TCGA.A6.6654	7	61072036	75287016	2391	0.2682	NEUTRAL	NA	61	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,KCTD7,LAT2,LIMK1,MLXIPL,NCF1,NSUN5,POM121,POM121C,RABGEF1,RFC2,SBDS,SPDYE5,STX1A,TBL2,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.A6.A56B	7	61074193	86628005	5653	0.0042	NEUTRAL	NA	96	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CACNA2D1,CALN1,CCDC146,CCL24,CCL26,CD36,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GNAI1,GNAT3,GRM3,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HGF,HIP1,HSPB1,KCTD7,KIAA1324L,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PCLO,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AY.A8YK	7	61846305	78607536	3303	0.1548	NEUTRAL	NA	84	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.G4.6299	7	61846654	89943493	6574	0.3035	NEUTRAL	NA	112	Too-Many
TCGA.4N.A93T	7	61858374	159119219	25367	0.0186	NEUTRAL	NA	595	Too-Many
TCGA.F4.6459	7	61888127	159119219	25367	0.1837	NEUTRAL	NA	595	Too-Many
TCGA.SS.A7HO	7	61987337	62836932	55	-0.088	NEUTRAL	NA	0	None
TCGA.CM.6169	7	61987337	70896688	1813	0.0418	NEUTRAL	NA	23	"ASL,AUTS2,CRCP,ERV3-1,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1,WBSCR17,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AD.6548	7	61987337	81243240	4114	-0.0132	NEUTRAL	NA	88	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CD36,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GNAI1,GNAT3,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SEMA3C,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.5M.AATA	7	61987337	83776916	5018	-0.0323	NEUTRAL	NA	93	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CACNA2D1,CALN1,CCDC146,CCL24,CCL26,CD36,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GNAI1,GNAT3,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HGF,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PCLO,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SEMA3A,SEMA3C,SEMA3E,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AA.3977	7	61987337	103451090	9513	-0.0065	NEUTRAL	NA	277	Too-Many
TCGA.F5.6812	7	61987337	108941880	11354	-0.051	NEUTRAL	NA	306	Too-Many
TCGA.AD.6899	7	61987337	159119219	25290	0.0147	NEUTRAL	NA	595	Too-Many
TCGA.CM.5341	7	61987337	159119219	25351	-0.2068	NEUTRAL	NA	595	Too-Many
TCGA.AA.3688	7	62020155	110409360	11797	0.0028	NEUTRAL	NA	307	Too-Many
TCGA.DC.4745	7	62020155	133857288	17586	0.3041	NEUTRAL	NA	407	Too-Many
TCGA.AA.3664	7	62020155	149636503	22285	0.015	NEUTRAL	NA	532	Too-Many
TCGA.AF.2690	7	62020155	159119219	25360	0.0023	NEUTRAL	NA	595	Too-Many
TCGA.AU.3779	7	62103377	159119219	25348	-0.3	NEUTRAL	NA	595	Too-Many
TCGA.AA.3850	7	62190867	76342578	2528	0.26555	NEUTRAL	NA	76	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,NCF1,NSUN5,POM121,POM121C,POMZP3,POR,RABGEF1,RFC2,RHBDD2,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.DM.A0XD	7	62190867	90212714	6638	-0.0123	NEUTRAL	NA	114	Too-Many
TCGA.G4.6303	7	62386044	110692567	11853	0.0859	NEUTRAL	NA	307	Too-Many
TCGA.AG.3591	7	62418967	103404814	9509	-0.1932	NEUTRAL	NA	277	Too-Many
TCGA.AA.3976	7	62418967	159119219	25332	0.0006	NEUTRAL	NA	595	Too-Many
TCGA.DM.A1D9	7	62439280	63771848	173	-0.0896	NEUTRAL	NA	3	"ZNF679,ZNF727,ZNF735"
TCGA.DM.A28H	7	62439280	99385682	8870	-0.0022	NEUTRAL	NA	185	Too-Many
TCGA.AA.3982	7	62453695	63819848	181	0.2292	NEUTRAL	NA	4	"ZNF679,ZNF727,ZNF735,ZNF736"
TCGA.DY.A1DC	7	62453695	76441371	2528	0.3582	NEUTRAL	NA	76	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,NCF1,NSUN5,POM121,POM121C,POMZP3,POR,RABGEF1,RFC2,RHBDD2,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AA.3530	7	62453695	99385682	8863	-0.0401	NEUTRAL	NA	185	Too-Many
TCGA.AA.3989	7	62453695	103463997	9524	0.0034	NEUTRAL	NA	277	Too-Many
TCGA.CM.5344	7	62653606	159119219	25307	-0.1254	NEUTRAL	NA	595	Too-Many
TCGA.D5.6926	7	62653606	159119219	25255	0.0048	NEUTRAL	NA	595	Too-Many
TCGA.CM.5868	7	62670217	159119219	25265	-0.0103	NEUTRAL	NA	595	Too-Many
TCGA.DM.A0XF	7	62678021	159119219	25311	0.0995	NEUTRAL	NA	595	Too-Many
TCGA.AF.3911	7	63110384	159119219	25302	0.0038	NEUTRAL	NA	595	Too-Many
TCGA.AG.A026	7	63116349	110391588	11703	0.0417	NEUTRAL	NA	307	Too-Many
TCGA.G4.6294	7	63266651	110881717	11834	-0.0144	NEUTRAL	NA	308	Too-Many
TCGA.SS.A7HO	7	63266651	149967985	22237	-0.0132	NEUTRAL	NA	533	Too-Many
TCGA.AZ.6603	7	63266651	159119219	25248	0.0277	NEUTRAL	NA	595	Too-Many
TCGA.AY.4070	7	63318257	71299786	1886	-0.1343	NEUTRAL	NA	24	"ASL,AUTS2,CALN1,CRCP,ERV3-1,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1,WBSCR17,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.3867	7	63435276	76441371	2446	0.2562	NEUTRAL	NA	76	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,NCF1,NSUN5,POM121,POM121C,POMZP3,POR,RABGEF1,RFC2,RHBDD2,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.A6.3810.01A	7	63505900	143882867	4798	0.0391	NEUTRAL	NA	506	Too-Many
TCGA.AG.A01W.01A	7	63618964	65082595	50	0.0537	NEUTRAL	NA	10	"ERV3-1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF735,ZNF736,ZNF92"
TCGA.AA.A00L.01A	7	63720577	75174334	412	0.2122	NEUTRAL	NA	59	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,KCTD7,LAT2,LIMK1,MLXIPL,NCF1,NSUN5,POM121,POM121C,RABGEF1,RFC2,SBDS,SPDYE5,STX1A,TBL2,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF736,ZNF92"
TCGA.DM.A1D9	7	63849101	159119219	25131	0.0362	NEUTRAL	NA	591	Too-Many
TCGA.AA.3982	7	63850188	65087973	180	0.2727	NEUTRAL	NA	7	"ERV3-1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF680,ZNF92"
TCGA.CK.5914.01A	7	63981497	66136346	77	0.2425	NEUTRAL	NA	13	"ASL,CRCP,ERV3-1,GUSB,KCTD7,TPST1,VKORC1L1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF680,ZNF92"
TCGA.AG.3909.01A	7	64004056	64275896	12	-0.3569	NEUTRAL	NA	3	"ZNF107,ZNF138,ZNF680"
TCGA.AG.4009.01A	7	64004056	64275896	12	-0.4245	NEUTRAL	NA	3	"ZNF107,ZNF138,ZNF680"
TCGA.AG.A016.01A	7	64004056	141747539	4143	0.3457	NEUTRAL	NA	466	Too-Many
TCGA.CI.6624	7	64256481	159119219	25027	0.0593	NEUTRAL	NA	589	Too-Many
TCGA.AG.4009.01A	7	64291277	64389310	9	0.2187	NEUTRAL	NA	2	"ZNF138,ZNF273"
TCGA.AG.A00C.01A	7	64291791	70236491	106	0.0555	NEUTRAL	NA	16	"ASL,AUTS2,CRCP,ERV3-1,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1,ZNF117,ZNF138,ZNF273,ZNF92"
TCGA.CA.6719	7	64325833	159119219	24998	0.2426	NEUTRAL	NA	588	Too-Many
TCGA.AG.4009.01A	7	64438465	64852813	7	-0.1583	NEUTRAL	NA	3	"ERV3-1,ZNF117,ZNF92"
TCGA.AA.3861.01A	7	64438465	72400431	143	0.2181	NEUTRAL	NA	18	"ASL,AUTS2,CALN1,CRCP,ERV3-1,GUSB,KCTD7,POM121,RABGEF1,SBDS,TMEM248,TPST1,TYW1,TYW1B,VKORC1L1,WBSCR17,ZNF117,ZNF92"
TCGA.EI.6508	7	64692185	81543885	3878	0.0185	NEUTRAL	NA	79	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CD36,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GNAI1,GNAT3,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HGF,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SEMA3C,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF92,ZP3"
TCGA.AG.3726	7	64781696	149636503	21921	0.0037	NEUTRAL	NA	522	Too-Many
TCGA.AA.A00N.01A	7	64838813	70597759	110	0.0091	NEUTRAL	NA	13	"ASL,AUTS2,CRCP,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1,WBSCR17,ZNF92"
TCGA.AA.A00D.01A	7	64838813	77423250	496	0.243	NEUTRAL	NA	72	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,NCF1,NSUN5,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF92,ZP3"
TCGA.CM.6163	7	64858944	159119219	24904	0.1551	NEUTRAL	NA	585	Too-Many
TCGA.DY.A0XA	7	64967235	159119219	24957	-0.0302	NEUTRAL	NA	584	Too-Many
TCGA.AG.A036.01A	7	65056460	75527608	504	0.2019	NEUTRAL	NA	53	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,EIF4H,ELN,FKBP6,FZD9,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,KCTD7,LAT2,LIMK1,MLXIPL,NCF1,NSUN5,POM121,POM121C,RABGEF1,RFC2,RHBDD2,SBDS,SPDYE5,STX1A,TBL2,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28"
TCGA.EI.6513	7	65068630	106984287	10376	0.0121	NEUTRAL	NA	281	Too-Many
TCGA.AG.A01W.01A	7	65116992	69878203	80	-0.2579	NEUTRAL	NA	11	"ASL,AUTS2,CRCP,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1"
TCGA.CI.6619	7	65326820	159119219	24925	0.2623	NEUTRAL	NA	584	Too-Many
TCGA.AA.A00Q.01A	7	65338342	66474543	62	0.3389	NEUTRAL	NA	10	"ASL,CRCP,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1"
TCGA.DM.A28M.01A	7	65338342	74146793	376	0.132	NEUTRAL	NA	40	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,EIF4H,ELN,FKBP6,FZD9,GTF2I,GTF2IRD1,GUSB,KCTD7,LAT2,LIMK1,MLXIPL,NSUN5,POM121,RABGEF1,RFC2,SBDS,STX1A,TBL2,TMEM248,TPST1,TRIM50,TYW1,TYW1B,VKORC1L1,VPS37D,WBSCR17,WBSCR22,WBSCR27,WBSCR28"
TCGA.AZ.4684.01A	7	65338342	77402459	630	0.2257	NEUTRAL	NA	70	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,NCF1,NSUN5,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.AA.3509.01A	7	65338342	77754991	653	-0.1277	NEUTRAL	NA	73	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.CA.6715	7	65365488	68393145	695	-0.0376	NEUTRAL	NA	10	"ASL,CRCP,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1"
TCGA.AA.3930.01A	7	65547796	76111785	502	0.3488	NEUTRAL	NA	61	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,FKBP6,FZD9,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,NCF1,NSUN5,POM121,POM121C,POR,RABGEF1,RFC2,RHBDD2,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.AA.A02K.01A	7	65592611	73108256	214	0.3223	NEUTRAL	NA	23	"AUTS2,BAZ1B,BCL7B,CALN1,CRCP,DNAJC30,FKBP6,FZD9,KCTD7,MLXIPL,NSUN5,POM121,RABGEF1,SBDS,TBL2,TMEM248,TPST1,TRIM50,TYW1,TYW1B,VPS37D,WBSCR17,WBSCR22"
TCGA.AA.3858	7	65675127	105585665	9824	0.091	NEUTRAL	NA	269	Too-Many
TCGA.AG.3611.01A	7	65841962	66240166	7	0.1235	NEUTRAL	NA	2	"KCTD7,RABGEF1"
TCGA.AF.3914.01A	7	66098244	99755700	1771	-0.0161	NEUTRAL	NA	185	Too-Many
TCGA.AG.3891.01A	7	66248611	66582443	29	0.3217	NEUTRAL	NA	4	"RABGEF1,SBDS,TMEM248,TYW1"
TCGA.A6.3807	7	66320710	109606835	10967	1.00E-04	NEUTRAL	NA	288	Too-Many
TCGA.CK.5914.01A	7	66415912	66479313	13	-0.0151	NEUTRAL	NA	3	"SBDS,TMEM248,TYW1"
TCGA.AG.3891.01A	7	66648063	72209413	49	-0.0962	NEUTRAL	NA	5	"AUTS2,CALN1,TYW1,TYW1B,WBSCR17"
TCGA.CK.5914.01A	7	66703248	70254707	25	-0.0437	NEUTRAL	NA	2	"AUTS2,TYW1"
TCGA.CA.5797	7	66728986	159119219	24816	0.0386	NEUTRAL	NA	574	Too-Many
TCGA.AA.3982	7	67866883	67867951	3	-0.4624	NEUTRAL	NA	0	None
TCGA.A6.6653	7	68191263	68286269	32	-0.4181	NEUTRAL	NA	0	None
TCGA.AH.6644	7	68279929	78024140	1947	-0.0312	NEUTRAL	NA	63	"ABHD11,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RFC2,RHBDD2,RSBN1L,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM60,TRIM50,TRIM73,TRIM74,TYW1B,UPK3B,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.A6.6653	7	68287167	73996532	1288	-0.0572	NEUTRAL	NA	29	"ABHD11,AUTS2,BAZ1B,BCL7B,CALN1,CLDN3,CLDN4,CLIP2,DNAJC30,EIF4H,ELN,FKBP6,FZD9,GTF2IRD1,LAT2,LIMK1,MLXIPL,NSUN5,POM121,RFC2,STX1A,TBL2,TRIM50,TYW1B,VPS37D,WBSCR17,WBSCR22,WBSCR27,WBSCR28"
TCGA.CA.6715	7	68399376	70116057	418	-0.0625	NEUTRAL	NA	1	AUTS2
TCGA.G4.6322	7	68872413	159119219	24082	0.0079	NEUTRAL	NA	574	Too-Many
TCGA.AG.3611.01A	7	69064610	70853174	22	0.242	NEUTRAL	NA	2	"AUTS2,WBSCR17"
TCGA.AA.3941	7	69084408	69505702	69	0.1986	NEUTRAL	NA	1	AUTS2
TCGA.AA.3982	7	69084408	70033812	168	0.3222	NEUTRAL	NA	1	AUTS2
TCGA.DM.A28F	7	69539139	84940785	3896	0.0011	NEUTRAL	NA	73	"ABHD11,AUTS2,BAZ1B,BCL7B,CACNA2D1,CALN1,CCDC146,CCL24,CCL26,CD36,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GNAI1,GNAT3,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HGF,HIP1,HSPB1,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PCLO,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RFC2,RHBDD2,RSBN1L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM60,TRIM50,TRIM73,TRIM74,TYW1B,UPK3B,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.AA.A00Q.01A	7	69599438	72040441	33	0.3423	NEUTRAL	NA	4	"AUTS2,CALN1,TYW1B,WBSCR17"
TCGA.CA.6715	7	70125708	159119219	23744	0.001	NEUTRAL	NA	574	Too-Many
TCGA.AG.3909.01A	7	70232936	70597759	11	-0.4934	NEUTRAL	NA	2	"AUTS2,WBSCR17"
TCGA.AG.A00C.01A	7	70238971	70800509	9	0.3162	NEUTRAL	NA	2	"AUTS2,WBSCR17"
TCGA.AA.3982	7	70429932	70432013	7	-0.259	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	7	70438461	72752958	140	-0.2634	NEUTRAL	NA	7	"CALN1,FKBP6,NSUN5,POM121,TRIM50,TYW1B,WBSCR17"
TCGA.AG.A00C.01A	7	70853174	72267365	23	-0.2268	NEUTRAL	NA	3	"CALN1,TYW1B,WBSCR17"
TCGA.CM.6169	7	70962644	159119219	23390	0.0786	NEUTRAL	NA	573	Too-Many
TCGA.AA.3495	7	70997277	83012135	2862	0.3315	NEUTRAL	NA	70	"ABHD11,BAZ1B,BCL7B,CACNA2D1,CALN1,CCDC146,CCL24,CCL26,CD36,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GNAI1,GNAT3,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HGF,HIP1,HSPB1,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PCLO,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RFC2,RHBDD2,RSBN1L,SEMA3C,SEMA3E,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM60,TRIM50,TRIM73,TRIM74,TYW1B,UPK3B,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.AY.4070	7	71314280	83024795	2731	0.11	NEUTRAL	NA	69	"ABHD11,BAZ1B,BCL7B,CACNA2D1,CALN1,CCDC146,CCL24,CCL26,CD36,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GNAI1,GNAT3,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HGF,HIP1,HSPB1,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PCLO,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RFC2,RHBDD2,RSBN1L,SEMA3C,SEMA3E,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM60,TRIM50,TRIM73,TRIM74,TYW1B,UPK3B,VPS37D,WBSCR16,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.AA.3666	7	71424079	142267509	18176	0.3774	NEUTRAL	NA	449	Too-Many
TCGA.AA.A00N.01A	7	72242380	72298572	7	-0.017	NEUTRAL	NA	1	TYW1B
TCGA.AG.3891.01A	7	72242380	73450863	120	0.2964	NEUTRAL	NA	20	"ABHD11,BAZ1B,BCL7B,CLDN3,CLDN4,DNAJC30,ELN,FKBP6,FZD9,MLXIPL,NSUN5,POM121,STX1A,TBL2,TRIM50,TYW1B,VPS37D,WBSCR22,WBSCR27,WBSCR28"
TCGA.AG.A00C.01A	7	72277629	74300522	251	0.2292	NEUTRAL	NA	29	"ABHD11,BAZ1B,BCL7B,CLDN3,CLDN4,CLIP2,DNAJC30,EIF4H,ELN,FKBP6,FZD9,GTF2I,GTF2IRD1,GTF2IRD2,LAT2,LIMK1,MLXIPL,NCF1,NSUN5,POM121,RFC2,STX1A,TBL2,TRIM50,TYW1B,VPS37D,WBSCR22,WBSCR27,WBSCR28"
TCGA.AG.4009.01A	7	72298572	73462760	123	0.1289	NEUTRAL	NA	20	"ABHD11,BAZ1B,BCL7B,CLDN3,CLDN4,DNAJC30,ELN,FKBP6,FZD9,MLXIPL,NSUN5,POM121,STX1A,TBL2,TRIM50,TYW1B,VPS37D,WBSCR22,WBSCR27,WBSCR28"
TCGA.AA.A01Q.01A	7	72396893	73084325	75	-0.0996	NEUTRAL	NA	10	"BAZ1B,BCL7B,FKBP6,FZD9,MLXIPL,NSUN5,POM121,TBL2,TRIM50,VPS37D"
TCGA.AA.A00Q.01A	7	72397289	73114677	76	0.3428	NEUTRAL	NA	13	"BAZ1B,BCL7B,DNAJC30,FKBP6,FZD9,MLXIPL,NSUN5,POM121,STX1A,TBL2,TRIM50,VPS37D,WBSCR22"
TCGA.AA.A010.01A	7	72411339	72469946	12	-0.4515	NEUTRAL	NA	1	POM121
TCGA.AG.3909.01A	7	72411339	72856539	32	-0.3173	NEUTRAL	NA	6	"BAZ1B,FKBP6,FZD9,NSUN5,POM121,TRIM50"
TCGA.AA.A00N.01A	7	72411339	73254308	106	-0.4377	NEUTRAL	NA	17	"ABHD11,BAZ1B,BCL7B,CLDN3,CLDN4,DNAJC30,FKBP6,FZD9,MLXIPL,NSUN5,POM121,STX1A,TBL2,TRIM50,VPS37D,WBSCR22,WBSCR27"
TCGA.CK.5914.01A	7	72411339	73657449	175	-0.0401	NEUTRAL	NA	23	"ABHD11,BAZ1B,BCL7B,CLDN3,CLDN4,DNAJC30,EIF4H,ELN,FKBP6,FZD9,LAT2,LIMK1,MLXIPL,NSUN5,POM121,RFC2,STX1A,TBL2,TRIM50,VPS37D,WBSCR22,WBSCR27,WBSCR28"
TCGA.AA.A010.01A	7	72717390	72754601	16	0.3712	NEUTRAL	NA	3	"FKBP6,NSUN5,TRIM50"
TCGA.A6.3808.01A	7	72722411	73083717	60	-0.1375	NEUTRAL	NA	9	"BAZ1B,BCL7B,FKBP6,FZD9,MLXIPL,NSUN5,TBL2,TRIM50,VPS37D"
TCGA.AA.3862.01A	7	72726866	74133178	206	0.1367	NEUTRAL	NA	24	"ABHD11,BAZ1B,BCL7B,CLDN3,CLDN4,CLIP2,DNAJC30,EIF4H,ELN,FKBP6,FZD9,GTF2I,GTF2IRD1,LAT2,LIMK1,MLXIPL,RFC2,STX1A,TBL2,TRIM50,VPS37D,WBSCR22,WBSCR27,WBSCR28"
TCGA.AA.3861.01A	7	72730513	74133178	205	0.0445	NEUTRAL	NA	24	"ABHD11,BAZ1B,BCL7B,CLDN3,CLDN4,CLIP2,DNAJC30,EIF4H,ELN,FKBP6,FZD9,GTF2I,GTF2IRD1,LAT2,LIMK1,MLXIPL,RFC2,STX1A,TBL2,TRIM50,VPS37D,WBSCR22,WBSCR27,WBSCR28"
TCGA.AG.A01W.01A	7	72755065	72892245	16	0.2191	NEUTRAL	NA	3	"BAZ1B,FKBP6,FZD9"
TCGA.AF.2692	7	72877165	76413309	307	-0.2965	NEUTRAL	NA	46	"ABHD11,BAZ1B,BCL7B,CCL24,CCL26,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,LAT2,LIMK1,MDH2,MLXIPL,NCF1,POM121C,POMZP3,POR,RFC2,RHBDD2,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TRIM73,TRIM74,UPK3B,VPS37D,WBSCR16,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.D5.5539	7	72877165	159119219	23104	0.2711	NEUTRAL	NA	565	Too-Many
TCGA.AA.A010.01A	7	72880593	72936120	10	-0.114	NEUTRAL	NA	1	BAZ1B
TCGA.AF.2689	7	72884187	76289032	295	-0.0825	NEUTRAL	NA	46	"ABHD11,BAZ1B,BCL7B,CCL24,CCL26,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,LAT2,LIMK1,MDH2,MLXIPL,NCF1,POM121C,POMZP3,POR,RFC2,RHBDD2,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TRIM73,TRIM74,UPK3B,VPS37D,WBSCR16,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.AG.A01W.01A	7	72892681	73089889	10	-0.414	NEUTRAL	NA	5	"BAZ1B,BCL7B,MLXIPL,TBL2,VPS37D"
TCGA.AG.3909.01A	7	72966448	73009960	11	-0.508	NEUTRAL	NA	3	"BCL7B,MLXIPL,TBL2"
TCGA.AA.A010.01A	7	72992723	73082237	13	0.2339	NEUTRAL	NA	3	"MLXIPL,TBL2,VPS37D"
TCGA.AG.4015	7	73094698	159119219	23043	0.0067	NEUTRAL	NA	560	Too-Many
TCGA.AG.A01W.01A	7	73104011	73831306	122	-0.2629	NEUTRAL	NA	13	"ABHD11,CLDN3,CLDN4,CLIP2,EIF4H,ELN,LAT2,LIMK1,RFC2,STX1A,WBSCR22,WBSCR27,WBSCR28"
TCGA.AA.A02K.01A	7	73111879	73152930	15	-0.1001	NEUTRAL	NA	3	"ABHD11,STX1A,WBSCR22"
TCGA.AA.A00Q.01A	7	73115030	73254308	16	-0.0777	NEUTRAL	NA	5	"ABHD11,CLDN3,CLDN4,STX1A,WBSCR27"
TCGA.AG.3909.01A	7	73122867	73460961	27	0.0305	NEUTRAL	NA	7	"ABHD11,CLDN3,CLDN4,ELN,STX1A,WBSCR27,WBSCR28"
TCGA.AA.A01Q.01A	7	73150857	74005106	114	-0.2593	NEUTRAL	NA	12	"ABHD11,CLDN3,CLDN4,CLIP2,EIF4H,ELN,GTF2IRD1,LAT2,LIMK1,RFC2,WBSCR27,WBSCR28"
TCGA.AG.3906.01A	7	73150857	97498223	1212	-0.0355	NEUTRAL	NA	117	Too-Many
TCGA.AA.A010.01A	7	73183715	73466074	25	0.2252	NEUTRAL	NA	5	"CLDN3,CLDN4,ELN,WBSCR27,WBSCR28"
TCGA.AA.A02K.01A	7	73183773	76943656	328	0.333	NEUTRAL	NA	40	"CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,DTX2,EIF4H,ELN,FGL2,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,LAT2,LIMK1,MDH2,NCF1,POM121C,POMZP3,POR,RFC2,RHBDD2,SPDYE5,SRRM3,SSC4D,STYXL1,TMEM120A,TRIM73,TRIM74,UPK3B,WBSCR16,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.AA.A00Q.01A	7	73254702	73588647	48	0.3602	NEUTRAL	NA	4	"ELN,LIMK1,WBSCR27,WBSCR28"
TCGA.AA.A00N.01A	7	73254702	74005106	114	0.2391	NEUTRAL	NA	9	"CLIP2,EIF4H,ELN,GTF2IRD1,LAT2,LIMK1,RFC2,WBSCR27,WBSCR28"
TCGA.CI.6621	7	73416441	75696605	191	-0.0066	NEUTRAL	NA	25	"CCL24,CCL26,CLIP2,EIF4H,ELN,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,LAT2,LIMK1,MDH2,NCF1,POM121C,POR,RFC2,RHBDD2,SPDYE5,STYXL1,TMEM120A,TRIM73,TRIM74,WBSCR16"
TCGA.AG.3891.01A	7	73451952	73462760	11	-0.1673	NEUTRAL	NA	1	ELN
TCGA.AG.A015.01A	7	73451952	128441202	2959	0.3173	NEUTRAL	NA	332	Too-Many
TCGA.AG.3891.01A	7	73466074	75601666	202	0.3311	NEUTRAL	NA	22	"CCL24,CCL26,CLIP2,EIF4H,ELN,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,LAT2,LIMK1,NCF1,POM121C,POR,RFC2,RHBDD2,SPDYE5,TRIM73,TRIM74,WBSCR16"
TCGA.CM.6675	7	73517113	151629635	20499	0	NEUTRAL	NA	526	Too-Many
TCGA.AA.A010.01A	7	73521291	73588647	10	0.0528	NEUTRAL	NA	1	LIMK1
TCGA.AG.4009.01A	7	73601901	73634845	11	0.31	NEUTRAL	NA	2	"EIF4H,LAT2"
TCGA.AA.A010.01A	7	73646387	73666742	10	0.1751	NEUTRAL	NA	1	RFC2
TCGA.AA.A00F.01A	7	73668560	73922364	18	0.1982	NEUTRAL	NA	3	"CLIP2,GTF2IRD1,RFC2"
TCGA.CK.5914.01A	7	73787212	73954152	22	0.0592	NEUTRAL	NA	2	"CLIP2,GTF2IRD1"
TCGA.AA.A00A.01A	7	73814668	73973874	20	0.0892	NEUTRAL	NA	2	"CLIP2,GTF2IRD1"
TCGA.AG.3909.01A	7	73944012	73954152	6	-0.3947	NEUTRAL	NA	1	GTF2IRD1
TCGA.AA.A01Q.01A	7	74103411	76033572	127	-0.1076	NEUTRAL	NA	23	"CCL24,CCL26,GATSL2,GTF2I,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,MDH2,NCF1,POM121C,POR,RHBDD2,SPDYE5,SRRM3,SSC4D,STYXL1,TMEM120A,TRIM73,TRIM74,WBSCR16,YWHAG,ZP3"
TCGA.DM.A28M.01A	7	74148197	74563513	44	-0.4676	NEUTRAL	NA	5	"GTF2I,GTF2IRD2,GTF2IRD2B,NCF1,WBSCR16"
TCGA.CK.5914.01A	7	74149741	75228437	97	-0.0797	NEUTRAL	NA	11	"GATSL2,GTF2I,GTF2IRD2,GTF2IRD2B,HIP1,NCF1,POM121C,SPDYE5,TRIM73,TRIM74,WBSCR16"
TCGA.AG.A025.01A	7	74149741	76129701	146	-0.4961	NEUTRAL	NA	24	"CCL24,CCL26,DTX2,GATSL2,GTF2I,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,MDH2,NCF1,POM121C,POR,RHBDD2,SPDYE5,SRRM3,SSC4D,STYXL1,TMEM120A,TRIM73,TRIM74,WBSCR16,YWHAG,ZP3"
TCGA.AG.4009.01A	7	74193395	74524709	18	0.0561	NEUTRAL	NA	4	"GTF2IRD2,GTF2IRD2B,NCF1,WBSCR16"
TCGA.AA.A010.01A	7	74221227	74554720	23	-0.1888	NEUTRAL	NA	3	"GTF2IRD2,GTF2IRD2B,WBSCR16"
TCGA.AG.A00C.01A	7	74469961	76796935	121	0.2638	NEUTRAL	NA	25	"CCDC146,CCL24,CCL26,DTX2,GATSL2,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,MDH2,POM121C,POMZP3,POR,RHBDD2,SPDYE5,SRRM3,SSC4D,STYXL1,TMEM120A,TRIM73,TRIM74,UPK3B,WBSCR16,YWHAG,ZP3"
TCGA.DM.A28M.01A	7	74573038	77469494	221	0.121	NEUTRAL	NA	28	"CCDC146,CCL24,CCL26,DTX2,FGL2,GATSL2,GSAP,HIP1,HSPB1,MDH2,PHTF2,POM121C,POMZP3,POR,PTPN12,RHBDD2,RSBN1L,SPDYE5,SRRM3,SSC4D,STYXL1,TMEM120A,TMEM60,TRIM73,TRIM74,UPK3B,YWHAG,ZP3"
TCGA.AG.A01W.01A	7	74662098	76749844	151	-0.1321	NEUTRAL	NA	21	"CCL24,CCL26,DTX2,GATSL2,HIP1,HSPB1,MDH2,POM121C,POMZP3,POR,RHBDD2,SPDYE5,SRRM3,SSC4D,STYXL1,TMEM120A,TRIM73,TRIM74,UPK3B,YWHAG,ZP3"
TCGA.AA.A010.01A	7	74824142	75140367	18	-0.4012	NEUTRAL	NA	5	"GATSL2,POM121C,SPDYE5,TRIM73,TRIM74"
TCGA.AG.3909.01A	7	75034070	75192200	38	-0.3562	NEUTRAL	NA	5	"HIP1,POM121C,SPDYE5,TRIM73,TRIM74"
TCGA.AA.A00Q.01A	7	75048563	100424529	1340	0.3092	NEUTRAL	NA	172	Too-Many
TCGA.AA.A00A.01A	7	75048563	135635312	2857	0.0554	NEUTRAL	NA	367	Too-Many
TCGA.AA.A01K.01A	7	75140367	76247448	82	0.126	NEUTRAL	NA	16	"CCL24,CCL26,DTX2,HIP1,HSPB1,MDH2,POMZP3,POR,RHBDD2,SRRM3,SSC4D,STYXL1,TMEM120A,UPK3B,YWHAG,ZP3"
TCGA.A6.3808.01A	7	75167421	75601666	42	0.2744	NEUTRAL	NA	5	"CCL24,CCL26,HIP1,POR,RHBDD2"
TCGA.AA.3861.01A	7	75167421	76062770	86	0.0664	NEUTRAL	NA	13	"CCL24,CCL26,HIP1,HSPB1,MDH2,POR,RHBDD2,SRRM3,SSC4D,STYXL1,TMEM120A,YWHAG,ZP3"
TCGA.AA.3862.01A	7	75167421	76062770	89	0.0402	NEUTRAL	NA	13	"CCL24,CCL26,HIP1,HSPB1,MDH2,POR,RHBDD2,SRRM3,SSC4D,STYXL1,TMEM120A,YWHAG,ZP3"
TCGA.AA.A00L.01A	7	75176184	75190573	13	-0.3341	NEUTRAL	NA	1	HIP1
TCGA.AA.A00L.01A	7	75191330	75933054	32	0.2546	NEUTRAL	NA	10	"CCL24,CCL26,HIP1,HSPB1,MDH2,POR,RHBDD2,SRRM3,STYXL1,TMEM120A"
TCGA.AA.A00F.01A	7	75211329	75442901	10	0.2379	NEUTRAL	NA	3	"CCL24,CCL26,HIP1"
TCGA.A6.6654	7	75293156	159119219	22911	0.2292	NEUTRAL	NA	535	Too-Many
TCGA.A6.6653	7	75475296	110681640	9421	0.0144	NEUTRAL	NA	244	Too-Many
TCGA.CK.5914.01A	7	75508351	76033572	62	0.0302	NEUTRAL	NA	10	"HSPB1,MDH2,POR,RHBDD2,SRRM3,SSC4D,STYXL1,TMEM120A,YWHAG,ZP3"
TCGA.AA.A00N.01A	7	75511105	76033572	62	-0.4069	NEUTRAL	NA	10	"HSPB1,MDH2,POR,RHBDD2,SRRM3,SSC4D,STYXL1,TMEM120A,YWHAG,ZP3"
TCGA.AG.3909.01A	7	75511105	76033572	43	0.189	NEUTRAL	NA	10	"HSPB1,MDH2,POR,RHBDD2,SRRM3,SSC4D,STYXL1,TMEM120A,YWHAG,ZP3"
TCGA.AG.A036.01A	7	75532008	89712626	563	0.1787	NEUTRAL	NA	45	"ABCB1,ABCB4,ADAM22,C7orf62,CACNA2D1,CCDC146,CD36,CROT,DBF4,DMTF1,DTX2,FGL2,GNAI1,GNAT3,GRM3,GSAP,HGF,HSPB1,KIAA1324L,MAGI2,MDH2,PCLO,PHTF2,POMZP3,POR,PTPN12,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,SRRM3,SSC4D,STEAP4,STYXL1,TMEM120A,TMEM243,TMEM60,UPK3B,YWHAG,ZNF804B,ZP3"
TCGA.AA.A010.01A	7	75583274	75889175	37	0.1378	NEUTRAL	NA	5	"MDH2,POR,SRRM3,STYXL1,TMEM120A"
TCGA.AG.3891.01A	7	75608727	75621412	7	-0.4087	NEUTRAL	NA	2	"POR,TMEM120A"
TCGA.AG.3891.01A	7	75625739	76111785	43	0.2539	NEUTRAL	NA	8	"DTX2,HSPB1,MDH2,SRRM3,SSC4D,STYXL1,YWHAG,ZP3"
TCGA.A6.3808.01A	7	75630161	76062770	44	0.1008	NEUTRAL	NA	7	"HSPB1,MDH2,SRRM3,SSC4D,STYXL1,YWHAG,ZP3"
TCGA.AA.A02F.01A	7	75633028	97770661	966	0.2229	NEUTRAL	NA	91	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DTX2,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,HSPB1,KIAA1324L,KRIT1,LMTK2,LRRD1,MAGI2,MDH2,MTERF1,OCM2,PCLO,PDK4,PEG10,PEX1,PHTF2,POMZP3,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,SRRM3,SSC4D,STEAP1,STEAP2,STEAP4,STYXL1,TAC1,TFPI2,TMEM243,TMEM60,UPK3B,YWHAG,ZNF804B,ZP3"
TCGA.AA.3967.01A	7	75687245	97870126	1014	0.2587	NEUTRAL	NA	92	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BET1,BHLHA15,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DTX2,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,HSPB1,KIAA1324L,KRIT1,LMTK2,LRRD1,MAGI2,MDH2,MTERF1,OCM2,PCLO,PDK4,PEG10,PEX1,PHTF2,POMZP3,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,SRRM3,SSC4D,STEAP1,STEAP2,STEAP4,TAC1,TECPR1,TFPI2,TMEM243,TMEM60,UPK3B,YWHAG,ZNF804B,ZP3"
TCGA.AG.4009.01A	7	75689664	76033572	18	-0.1206	NEUTRAL	NA	6	"HSPB1,MDH2,SRRM3,SSC4D,YWHAG,ZP3"
TCGA.AA.A010.01A	7	75932043	76033572	13	-0.13	NEUTRAL	NA	4	"HSPB1,SSC4D,YWHAG,ZP3"
TCGA.AA.A00L.01A	7	75958842	76029572	9	-0.2959	NEUTRAL	NA	3	"SSC4D,YWHAG,ZP3"
TCGA.AA.A00L.01A	7	76030242	77378694	68	0.2255	NEUTRAL	NA	10	"CCDC146,DTX2,FGL2,GSAP,POMZP3,PTPN12,RSBN1L,SSC4D,UPK3B,ZP3"
TCGA.AA.A010.01A	7	76054323	76959504	56	0.3334	NEUTRAL	NA	7	"CCDC146,DTX2,FGL2,GSAP,POMZP3,UPK3B,ZP3"
TCGA.AA.A00F.01A	7	76054323	97362992	762	0.2839	NEUTRAL	NA	82	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DTX2,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,POMZP3,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TFPI2,TMEM243,TMEM60,UPK3B,ZNF804B,ZP3"
TCGA.AG.3909.01A	7	76109810	76255250	11	0.1198	NEUTRAL	NA	3	"DTX2,POMZP3,UPK3B"
TCGA.AA.A00N.01A	7	76109810	76796935	19	-0.3076	NEUTRAL	NA	4	"CCDC146,DTX2,POMZP3,UPK3B"
TCGA.CK.5914.01A	7	76109810	76891388	28	0.0156	NEUTRAL	NA	5	"CCDC146,DTX2,FGL2,POMZP3,UPK3B"
TCGA.AG.3891.01A	7	76126615	76143216	5	-0.4345	NEUTRAL	NA	2	"DTX2,UPK3B"
TCGA.AA.3930.01A	7	76126615	158936978	4964	0.0382	NEUTRAL	NA	522	Too-Many
TCGA.AZ.6598	7	76136388	76533800	49	-0.4587	NEUTRAL	NA	2	"POMZP3,UPK3B"
TCGA.AA.3941	7	76137374	76441371	26	0.0585	NEUTRAL	NA	2	"POMZP3,UPK3B"
TCGA.AG.A025.01A	7	76139953	96338936	926	0.1133	NEUTRAL	NA	76	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,POMZP3,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,TMEM60,UPK3B,ZNF804B"
TCGA.AG.4009.01A	7	76143216	76828481	10	0.0978	NEUTRAL	NA	4	"CCDC146,FGL2,POMZP3,UPK3B"
TCGA.AG.3891.01A	7	76144335	77268490	70	0.0754	NEUTRAL	NA	6	"CCDC146,FGL2,GSAP,POMZP3,PTPN12,UPK3B"
TCGA.AA.3973	7	76216620	76505606	35	-0.4322	NEUTRAL	NA	1	POMZP3
TCGA.AA.3982	7	76216620	77882367	421	0.2005	NEUTRAL	NA	9	"CCDC146,FGL2,GSAP,MAGI2,PHTF2,POMZP3,PTPN12,RSBN1L,TMEM60"
TCGA.AA.A01Q.01A	7	76239432	77754991	55	0.1574	NEUTRAL	NA	9	"CCDC146,FGL2,GSAP,MAGI2,PHTF2,POMZP3,PTPN12,RSBN1L,TMEM60"
TCGA.A6.2679	7	76289032	76607294	48	-0.1617	NEUTRAL	NA	0	None
TCGA.A6.5665	7	76291356	97500073	6003	0.1154	NEUTRAL	NA	79	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.AF.2689	7	76291356	119388126	11176	0.2749	NEUTRAL	NA	255	Too-Many
TCGA.A6.5661	7	76342578	97467022	5990	0.1747	NEUTRAL	NA	78	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.A6.2672	7	76342578	101332925	6577	0.0537	NEUTRAL	NA	175	Too-Many
TCGA.AF.2692	7	76417750	99538840	6390	0.0617	NEUTRAL	NA	113	Too-Many
TCGA.AA.3842	7	76449295	76509267	13	-0.0464	NEUTRAL	NA	0	None
TCGA.AA.3867	7	76481071	103451090	6981	0.0514	NEUTRAL	NA	201	Too-Many
TCGA.AA.3695	7	76505606	76533800	11	-0.2143	NEUTRAL	NA	0	None
TCGA.AA.3850	7	76509267	76527550	6	-0.24625	NEUTRAL	NA	0	None
TCGA.AA.3941	7	76509505	76607294	15	-0.1523	NEUTRAL	NA	0	None
TCGA.AA.3842	7	76509505	91170448	4408	0.3661	NEUTRAL	NA	40	"ABCB1,ABCB4,ADAM22,C7orf62,CACNA2D1,CCDC146,CD36,CDK14,CFAP69,CLDN12,CROT,DBF4,DMTF1,FGL2,FZD1,GNAI1,GNAT3,GRM3,GSAP,GTPBP10,HGF,KIAA1324L,MAGI2,PCLO,PHTF2,PTPN12,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,TMEM60,ZNF804B"
TCGA.AA.3872	7	76515212	103463997	6972	0.3034	NEUTRAL	NA	201	Too-Many
TCGA.AA.3860	7	76515212	110591123	9287	0.0265	NEUTRAL	NA	231	Too-Many
TCGA.AA.3973	7	76515212	142267509	17605	-0.0041	NEUTRAL	NA	396	Too-Many
TCGA.AZ.6598	7	76539640	76565749	6	0.075	NEUTRAL	NA	0	None
TCGA.AA.3695	7	76539640	142338468	17628	0.2988	NEUTRAL	NA	396	Too-Many
TCGA.AA.3850	7	76550044	77766095	303	0.18615	NEUTRAL	NA	8	"CCDC146,FGL2,GSAP,MAGI2,PHTF2,PTPN12,RSBN1L,TMEM60"
TCGA.A6.2679	7	76712800	159119219	22751	0.3506	NEUTRAL	NA	519	Too-Many
TCGA.CI.6621	7	76757010	78572662	704	0.0535	NEUTRAL	NA	8	"CCDC146,FGL2,GSAP,MAGI2,PHTF2,PTPN12,RSBN1L,TMEM60"
TCGA.AA.A02E.01A	7	76796935	96338936	908	0.2391	NEUTRAL	NA	74	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.AA.A01K.01A	7	76796935	97833248	949	0.2302	NEUTRAL	NA	81	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LMTK2,LRRD1,MAGI2,MTERF1,OCM2,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.AG.A00C.01A	7	76825638	77006110	39	-0.1639	NEUTRAL	NA	3	"CCDC146,FGL2,GSAP"
TCGA.AA.3861.01A	7	76940621	91690527	565	0.0972	NEUTRAL	NA	40	"ABCB1,ABCB4,ADAM22,AKAP9,C7orf62,CACNA2D1,CD36,CDK14,CFAP69,CLDN12,CROT,DBF4,DMTF1,FZD1,GNAI1,GNAT3,GRM3,GSAP,GTPBP10,HGF,KIAA1324L,MAGI2,MTERF1,PCLO,PHTF2,PTPN12,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,TMEM60,ZNF804B"
TCGA.AA.3862.01A	7	76941400	91690527	564	-0.0105	NEUTRAL	NA	40	"ABCB1,ABCB4,ADAM22,AKAP9,C7orf62,CACNA2D1,CD36,CDK14,CFAP69,CLDN12,CROT,DBF4,DMTF1,FZD1,GNAI1,GNAT3,GRM3,GSAP,GTPBP10,HGF,KIAA1324L,MAGI2,MTERF1,PCLO,PHTF2,PTPN12,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,TMEM60,ZNF804B"
TCGA.AA.A00O.01A	7	76942764	97939710	936	0.1224	NEUTRAL	NA	83	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BAIAP2L1,BET1,BHLHA15,BRI3,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LMTK2,LRRD1,MAGI2,MTERF1,OCM2,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TECPR1,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.AA.A02K.01A	7	76950043	76957839	5	-0.177	NEUTRAL	NA	1	GSAP
TCGA.AA.A02K.01A	7	76958578	87537247	414	0.1503	NEUTRAL	NA	26	"ABCB1,ABCB4,CACNA2D1,CD36,CROT,DBF4,DMTF1,GNAI1,GNAT3,GRM3,GSAP,HGF,KIAA1324L,MAGI2,PCLO,PHTF2,PTPN12,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,TMEM243,TMEM60"
TCGA.AG.4009.01A	7	76959504	87092022	338	0.2616	NEUTRAL	NA	22	"ABCB4,CACNA2D1,CD36,CROT,DMTF1,GNAI1,GNAT3,GRM3,GSAP,HGF,KIAA1324L,MAGI2,PCLO,PHTF2,PTPN12,RSBN1L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,TMEM243,TMEM60"
TCGA.AA.A010.01A	7	76978595	77011825	12	-0.2442	NEUTRAL	NA	1	GSAP
TCGA.CK.5914.01A	7	77010560	77754991	53	0.1383	NEUTRAL	NA	6	"GSAP,MAGI2,PHTF2,PTPN12,RSBN1L,TMEM60"
TCGA.AG.A00Y.01A	7	77035298	97935701	923	-0.1315	NEUTRAL	NA	83	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BAIAP2L1,BET1,BHLHA15,BRI3,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LMTK2,LRRD1,MAGI2,MTERF1,OCM2,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TECPR1,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.AA.A00N.01A	7	77045478	77469494	27	0.241	NEUTRAL	NA	5	"GSAP,PHTF2,PTPN12,RSBN1L,TMEM60"
TCGA.D5.5538	7	77188637	159119219	22645	0.0073	NEUTRAL	NA	516	Too-Many
TCGA.AG.A00C.01A	7	77200348	94937274	793	-0.1285	NEUTRAL	NA	63	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,BET1,C7orf62,CACNA2D1,CALCR,CASD1,CCDC132,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PEG10,PEX1,PHTF2,PON1,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.AG.3891.01A	7	77325798	92158077	605	-0.2469	NEUTRAL	NA	44	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,C7orf62,CACNA2D1,CD36,CDK14,CFAP69,CLDN12,CROT,CYP51A1,DBF4,DMTF1,FZD1,GATAD1,GNAI1,GNAT3,GRM3,GTPBP10,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PEX1,PHTF2,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,TMEM60,ZNF804B"
TCGA.AA.A00L.01A	7	77394761	91509284	377	-0.1488	NEUTRAL	NA	37	"ABCB1,ABCB4,ADAM22,C7orf62,CACNA2D1,CD36,CDK14,CFAP69,CLDN12,CROT,DBF4,DMTF1,FZD1,GNAI1,GNAT3,GRM3,GTPBP10,HGF,KIAA1324L,MAGI2,MTERF1,PCLO,PHTF2,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,TMEM60,ZNF804B"
TCGA.DM.A28M.01A	7	77529966	77975207	30	0.1844	NEUTRAL	NA	2	"MAGI2,PHTF2"
TCGA.AA.A00K.01A	7	77648605	81591173	79	-0.3284	NEUTRAL	NA	7	"CACNA2D1,CD36,GNAI1,GNAT3,HGF,MAGI2,SEMA3C"
TCGA.AA.A00D.01A	7	77648605	86576996	198	-0.1115	NEUTRAL	NA	13	"CACNA2D1,CD36,GNAI1,GNAT3,GRM3,HGF,KIAA1324L,MAGI2,PCLO,SEMA3A,SEMA3C,SEMA3D,SEMA3E"
TCGA.AG.3611.01A	7	77764311	96635246	686	0.2418	NEUTRAL	NA	67	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,ZNF804B"
TCGA.AA.3850	7	77781214	77804845	17	0.22135	NEUTRAL	NA	1	MAGI2
TCGA.AA.A01Q.01A	7	77814905	97870126	727	-0.0387	NEUTRAL	NA	76	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BET1,BHLHA15,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LMTK2,LRRD1,MAGI2,MTERF1,OCM2,PCLO,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TECPR1,TFPI2,TMEM243,ZNF804B"
TCGA.AA.3850	7	77825651	77855893	21	0.15215	NEUTRAL	NA	1	MAGI2
TCGA.AA.3811	7	77882367	78331065	248	-0.2627	NEUTRAL	NA	1	MAGI2
TCGA.AA.3844	7	77882367	93123166	4392	0.0838	NEUTRAL	NA	49	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,C7orf62,CACNA2D1,CALCR,CCDC132,CD36,CDK14,CDK6,CFAP69,CLDN12,CROT,CYP51A1,DBF4,DMTF1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GRM3,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PEX1,RBM48,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,ZNF804B"
TCGA.AA.3982	7	77886263	78331065	246	-0.1737	NEUTRAL	NA	1	MAGI2
TCGA.AA.3941	7	77886263	82376147	1571	-0.0121	NEUTRAL	NA	7	"CACNA2D1,CD36,GNAI1,GNAT3,HGF,MAGI2,SEMA3C"
TCGA.AG.3882	7	78002502	112040360	9205	0.2968	NEUTRAL	NA	227	Too-Many
TCGA.AA.A010.01A	7	78119021	80378162	35	-0.1059	NEUTRAL	NA	5	"CD36,GNAI1,GNAT3,MAGI2,SEMA3C"
TCGA.AA.3982	7	78342796	80272567	612	-0.1938	NEUTRAL	NA	4	"CD36,GNAI1,GNAT3,MAGI2"
TCGA.AA.3811	7	78353676	89734103	3312	-0.3318	NEUTRAL	NA	26	"ABCB1,ABCB4,ADAM22,C7orf62,CACNA2D1,CD36,CROT,DBF4,DMTF1,GNAI1,GNAT3,GRM3,HGF,KIAA1324L,MAGI2,PCLO,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP4,TMEM243,ZNF804B"
TCGA.CI.6621	7	78573029	79553136	275	0.342	NEUTRAL	NA	1	MAGI2
TCGA.4T.AA8H	7	78856070	86535445	2278	0.371	NEUTRAL	NA	13	"CACNA2D1,CD36,GNAI1,GNAT3,GRM3,HGF,KIAA1324L,MAGI2,PCLO,SEMA3A,SEMA3C,SEMA3D,SEMA3E"
TCGA.RU.A8FL	7	78856070	146135188	17711	0.2702	NEUTRAL	NA	432	Too-Many
TCGA.CI.6621	7	79553345	88497610	2576	0.0414	NEUTRAL	NA	25	"ABCB1,ABCB4,ADAM22,C7orf62,CACNA2D1,CD36,CROT,DBF4,DMTF1,GNAI1,GNAT3,GRM3,HGF,KIAA1324L,PCLO,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP4,TMEM243,ZNF804B"
TCGA.AY.A8YK	7	79910080	95517175	4336	0.1432	NEUTRAL	NA	62	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,CACNA2D1,CALCR,CASD1,CCDC132,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNAT3,GNG11,GNGT1,GRM3,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MTERF1,PCLO,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,ZNF804B"
TCGA.AA.3982	7	80280865	80793858	171	0.155	NEUTRAL	NA	2	"CD36,SEMA3C"
TCGA.AA.A010.01A	7	80456721	90041972	384	-0.1176	NEUTRAL	NA	27	"ABCB1,ABCB4,ADAM22,C7orf62,CACNA2D1,CFAP69,CLDN12,CROT,DBF4,DMTF1,GRM3,GTPBP10,HGF,KIAA1324L,PCLO,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,ZNF804B"
TCGA.AA.3982	7	80794747	81781050	311	-0.2127	NEUTRAL	NA	2	"CACNA2D1,HGF"
TCGA.T9.A92H	7	80906519	159119219	21309	0.0398	NEUTRAL	NA	507	Too-Many
TCGA.AD.6548	7	81248809	83337956	714	-0.4288	NEUTRAL	NA	4	"CACNA2D1,HGF,PCLO,SEMA3E"
TCGA.AA.A00K.01A	7	81591707	99792867	985	-0.0285	NEUTRAL	NA	115	Too-Many
TCGA.DM.A28M.01A	7	81603722	105739557	1857	0.2669	NEUTRAL	NA	197	Too-Many
TCGA.EI.6508	7	81663274	110448307	7570	0.0358	NEUTRAL	NA	218	Too-Many
TCGA.AA.3982	7	81797196	82257574	177	0.0412	NEUTRAL	NA	1	CACNA2D1
TCGA.AA.3982	7	82283789	89711821	2029	-0.3561	NEUTRAL	NA	19	"ABCB1,ABCB4,ADAM22,C7orf62,CROT,DBF4,DMTF1,GRM3,KIAA1324L,PCLO,RUNDC3B,SEMA3A,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP4,TMEM243,ZNF804B"
TCGA.AA.3941	7	82382456	84199916	605	-0.2194	NEUTRAL	NA	3	"PCLO,SEMA3A,SEMA3E"
TCGA.AD.6548	7	83338752	109522834	6661	0.0428	NEUTRAL	NA	214	Too-Many
TCGA.G4.6298	7	83789601	159119219	20331	0.3055	NEUTRAL	NA	503	Too-Many
TCGA.AG.3885	7	84131878	84377592	51	0.038	NEUTRAL	NA	0	None
TCGA.AA.3941	7	84218396	86770105	585	-0.4159	NEUTRAL	NA	3	"GRM3,KIAA1324L,SEMA3D"
TCGA.5M.AATA	7	84427011	159119219	20185	-0.017	NEUTRAL	NA	502	Too-Many
TCGA.AY.4070	7	85337832	85418830	17	0.0648	NEUTRAL	NA	0	None
TCGA.DM.A28F	7	86341445	109308528	5878	0.0002	NEUTRAL	NA	212	Too-Many
TCGA.4T.AA8H	7	86544666	159119219	19708	0.3612	NEUTRAL	NA	500	Too-Many
TCGA.A6.A56B	7	86628369	95314174	2255	0.3245	NEUTRAL	NA	51	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,CALCR,CASD1,CCDC132,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,FAM133B,FZD1,GATAD1,GNG11,GNGT1,GTPBP10,HEPACAM2,KIAA1324L,KRIT1,LRRD1,MTERF1,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,RUNDC3B,SAMD9,SAMD9L,SGCE,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,ZNF804B"
TCGA.AA.3850	7	86629650	87976944	259	-0.21605	NEUTRAL	NA	12	"ABCB1,ABCB4,ADAM22,CROT,DBF4,DMTF1,KIAA1324L,RUNDC3B,SLC25A40,SRI,STEAP4,TMEM243"
TCGA.AA.A00N.01A	7	86688589	86978337	22	-0.4752	NEUTRAL	NA	4	"CROT,DMTF1,KIAA1324L,TMEM243"
TCGA.AA.3941	7	86775234	87980921	220	0.2017	NEUTRAL	NA	11	"ABCB1,ABCB4,ADAM22,CROT,DBF4,DMTF1,RUNDC3B,SLC25A40,SRI,STEAP4,TMEM243"
TCGA.AA.A00D.01A	7	86794228	87011191	28	0.2575	NEUTRAL	NA	3	"CROT,DMTF1,TMEM243"
TCGA.AA.A00N.01A	7	86986763	86990997	4	0.1709	NEUTRAL	NA	1	CROT
TCGA.AA.A00D.01A	7	87011689	87072596	21	-0.2137	NEUTRAL	NA	2	"ABCB4,CROT"
TCGA.AA.3509.01A	7	87031385	87144509	30	-0.0394	NEUTRAL	NA	2	"ABCB1,ABCB4"
TCGA.AA.A00D.01A	7	87072962	87135165	12	0.2231	NEUTRAL	NA	2	"ABCB1,ABCB4"
TCGA.AA.A00N.01A	7	87074130	87083782	6	0.3428	NEUTRAL	NA	1	ABCB4
TCGA.AG.4009.01A	7	87133522	96338936	542	0.2441	NEUTRAL	NA	50	"ABCB1,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CALCR,CASD1,CCDC132,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CYP51A1,DBF4,DYNC1I1,FAM133B,FZD1,GATAD1,GNG11,GNGT1,GTPBP10,HEPACAM2,KRIT1,LRRD1,MTERF1,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,RUNDC3B,SAMD9,SAMD9L,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,ZNF804B"
TCGA.AA.A00D.01A	7	87138563	87190529	18	-0.1614	NEUTRAL	NA	1	ABCB1
TCGA.CK.5914.01A	7	87179786	87229376	9	0.0318	NEUTRAL	NA	1	ABCB1
TCGA.AA.A00D.01A	7	87195368	92252276	201	0.2756	NEUTRAL	NA	27	"ABCB1,ADAM22,AKAP9,ANKIB1,C7orf62,CDK14,CDK6,CFAP69,CLDN12,CYP51A1,DBF4,FAM133B,FZD1,GATAD1,GTPBP10,KRIT1,LRRD1,MTERF1,PEX1,RBM48,RUNDC3B,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,ZNF804B"
TCGA.AA.A00N.01A	7	87199426	87280088	6	-0.2273	NEUTRAL	NA	2	"ABCB1,RUNDC3B"
TCGA.AG.3909.01A	7	87214781	87229376	3	-0.2031	NEUTRAL	NA	1	ABCB1
TCGA.G4.6626	7	87462514	87639898	25	-0.0856	NEUTRAL	NA	3	"ADAM22,DBF4,SLC25A40"
TCGA.AA.A00N.01A	7	87473042	87505974	8	-0.3129	NEUTRAL	NA	2	"DBF4,SLC25A40"
TCGA.AG.3909.01A	7	87483482	87505974	4	0.1879	NEUTRAL	NA	2	"DBF4,SLC25A40"
TCGA.AA.A01C.01A	7	87483482	92731420	272	0.3024	NEUTRAL	NA	26	"ADAM22,AKAP9,ANKIB1,C7orf62,CDK14,CDK6,CFAP69,CLDN12,CYP51A1,DBF4,FAM133B,FZD1,GATAD1,GTPBP10,KRIT1,LRRD1,MTERF1,PEX1,RBM48,SAMD9,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,ZNF804B"
TCGA.AG.3909.01A	7	87507341	87517238	5	-0.474	NEUTRAL	NA	1	DBF4
TCGA.CK.4948.01B	7	87507341	87607593	14	0.0869	NEUTRAL	NA	2	"ADAM22,DBF4"
TCGA.AA.A00N.01A	7	87525706	87536501	6	-0.3595	NEUTRAL	NA	1	DBF4
TCGA.AG.3909.01A	7	87525706	87564300	8	0.3514	NEUTRAL	NA	2	"ADAM22,DBF4"
TCGA.G4.6626	7	87644022	109943552	5748	0.3699	NEUTRAL	NA	202	Too-Many
TCGA.CK.4948.01B	7	87704875	87780230	16	0.3431	NEUTRAL	NA	1	ADAM22
TCGA.AA.A02K.01A	7	87704876	97861080	574	0.2167	NEUTRAL	NA	55	"ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BET1,BHLHA15,C7orf62,C7orf76,CALCR,CASD1,CCDC132,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CYP51A1,DLX5,DLX6,DYNC1I1,FAM133B,FZD1,GATAD1,GNG11,GNGT1,GTPBP10,HEPACAM2,KRIT1,LMTK2,LRRD1,MTERF1,OCM2,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,SAMD9,SAMD9L,SDHAF3,SGCE,SHFM1,SLC25A13,SRI,STEAP1,STEAP2,STEAP4,TAC1,TECPR1,TFPI2,ZNF804B"
TCGA.CK.4948.01B	7	87810773	114293963	1935	0.2116	NEUTRAL	NA	213	Too-Many
TCGA.CK.5914.01A	7	87822389	89866155	34	-0.2608	NEUTRAL	NA	7	"ADAM22,C7orf62,SRI,STEAP1,STEAP2,STEAP4,ZNF804B"
TCGA.AG.3909.01A	7	87835715	87910208	10	-0.2639	NEUTRAL	NA	2	"SRI,STEAP4"
TCGA.AG.3909.01A	7	87911909	88966076	9	0.3644	NEUTRAL	NA	3	"C7orf62,STEAP4,ZNF804B"
TCGA.AA.3941	7	87981431	89711821	575	-0.4088	NEUTRAL	NA	2	"C7orf62,ZNF804B"
TCGA.AA.3495	7	88045666	91225898	1054	0.2848	NEUTRAL	NA	9	"C7orf62,CDK14,CFAP69,CLDN12,FZD1,GTPBP10,STEAP1,STEAP2,ZNF804B"
TCGA.AA.A00N.01A	7	88389242	88966076	7	0.1309	NEUTRAL	NA	2	"C7orf62,ZNF804B"
TCGA.AA.3556	7	88447160	100897811	2922	0.038	NEUTRAL	NA	140	Too-Many
TCGA.AH.6549.01A	7	88956641	90041972	52	-0.433	NEUTRAL	NA	6	"CFAP69,CLDN12,GTPBP10,STEAP1,STEAP2,ZNF804B"
TCGA.AA.3952	7	89043396	159119219	19061	0.3543	NEUTRAL	NA	486	Too-Many
TCGA.AA.3850	7	89715251	92247111	630	-0.13945	NEUTRAL	NA	18	"AKAP9,ANKIB1,CDK14,CDK6,CFAP69,CLDN12,CYP51A1,FAM133B,FZD1,GATAD1,GTPBP10,KRIT1,LRRD1,MTERF1,PEX1,RBM48,STEAP1,STEAP2"
TCGA.AA.3941	7	89715251	93110370	823	0.2399	NEUTRAL	NA	23	"AKAP9,ANKIB1,CALCR,CCDC132,CDK14,CDK6,CFAP69,CLDN12,CYP51A1,FAM133B,FZD1,GATAD1,GTPBP10,HEPACAM2,KRIT1,LRRD1,MTERF1,PEX1,RBM48,SAMD9,SAMD9L,STEAP1,STEAP2"
TCGA.AA.3982	7	89715251	93123166	826	0.0251	NEUTRAL	NA	23	"AKAP9,ANKIB1,CALCR,CCDC132,CDK14,CDK6,CFAP69,CLDN12,CYP51A1,FAM133B,FZD1,GATAD1,GTPBP10,HEPACAM2,KRIT1,LRRD1,MTERF1,PEX1,RBM48,SAMD9,SAMD9L,STEAP1,STEAP2"
TCGA.AG.A036.01A	7	89722602	89777270	20	-0.131	NEUTRAL	NA	0	None
TCGA.AA.3811	7	89746970	93091237	811	-0.0168	NEUTRAL	NA	23	"AKAP9,ANKIB1,CALCR,CCDC132,CDK14,CDK6,CFAP69,CLDN12,CYP51A1,FAM133B,FZD1,GATAD1,GTPBP10,HEPACAM2,KRIT1,LRRD1,MTERF1,PEX1,RBM48,SAMD9,SAMD9L,STEAP1,STEAP2"
TCGA.AG.3909.01A	7	89789067	89861642	8	-0.3176	NEUTRAL	NA	2	"STEAP1,STEAP2"
TCGA.AG.A036.01A	7	89813919	99926026	901	0.1913	NEUTRAL	NA	97	"AKAP9,ANKIB1,AP4M1,ARPC1A,ARPC1B,ASB4,ASNS,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BET1,BHLHA15,BRI3,BUD31,C7orf43,C7orf76,CALCR,CASD1,CCDC132,CDK14,CDK6,CFAP69,CLDN12,CNPY4,COL1A2,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,CYP51A1,DLX5,DLX6,DYNC1I1,FAM133B,FAM200A,FZD1,GAL3ST4,GATAD1,GATS,GJC3,GNG11,GNGT1,GPC2,GS1-259H13.2,GTPBP10,HEPACAM2,KPNA7,KRIT1,LAMTOR4,LMTK2,LRRD1,MBLAC1,MCM7,MTERF1,NPTX2,OCM2,OR2AE1,PDAP1,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,PTCD1,PVRIG,RBM48,SAMD9,SAMD9L,SDHAF3,SGCE,SHFM1,SLC25A13,SMURF1,SPDYE3,STAG3,STEAP2,TAC1,TAF6,TECPR1,TFPI2,TMEM130,TRIM4,TRRAP,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.CM.5860	7	89838885	89902604	22	0.2769	NEUTRAL	NA	2	"CFAP69,STEAP2"
TCGA.CK.5914.01A	7	89867329	90747343	51	0.2917	NEUTRAL	NA	4	"CDK14,CFAP69,CLDN12,GTPBP10"
TCGA.CI.6621	7	89895713	90287503	126	-0.0111	NEUTRAL	NA	4	"CDK14,CFAP69,CLDN12,GTPBP10"
TCGA.AA.A00N.01A	7	89915543	90747343	37	-0.1095	NEUTRAL	NA	4	"CDK14,CFAP69,CLDN12,GTPBP10"
TCGA.G4.6299	7	89943819	90084455	39	-0.0291	NEUTRAL	NA	2	"CLDN12,GTPBP10"
TCGA.AA.3518	7	89949664	159119219	18734	0	NEUTRAL	NA	483	Too-Many
TCGA.G4.6299	7	90084654	100010769	2358	0.327	NEUTRAL	NA	96	"AKAP9,ANKIB1,AP4M1,ARPC1A,ARPC1B,ASB4,ASNS,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BET1,BHLHA15,BRI3,BUD31,C7orf43,C7orf76,CALCR,CASD1,CCDC132,CDK14,CDK6,CNPY4,COL1A2,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,CYP51A1,DLX5,DLX6,DYNC1I1,FAM133B,FAM200A,FZD1,GAL3ST4,GATAD1,GATS,GJC3,GNG11,GNGT1,GPC2,GS1-259H13.2,HEPACAM2,KPNA7,KRIT1,LAMTOR4,LMTK2,LRRD1,MBLAC1,MCM7,MTERF1,NPTX2,OCM2,OR2AE1,PDAP1,PDK4,PEG10,PEX1,PILRA,PILRB,PON1,PON2,PON3,PPP1R9A,PTCD1,PVRIG,RBM48,SAMD9,SAMD9L,SDHAF3,SGCE,SHFM1,SLC25A13,SMURF1,SPDYE3,STAG3,TAC1,TAF6,TECPR1,TFPI2,TMEM130,TRIM4,TRRAP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AH.6549.01A	7	90225890	158936978	4477	-0.0338	NEUTRAL	NA	481	Too-Many
TCGA.DM.A0XD	7	90260846	93529614	781	0.0113	NEUTRAL	NA	19	"AKAP9,ANKIB1,CALCR,CCDC132,CDK14,CDK6,CYP51A1,FAM133B,FZD1,GATAD1,HEPACAM2,KRIT1,LRRD1,MTERF1,PEX1,RBM48,SAMD9,SAMD9L,TFPI2"
TCGA.AA.A010.01A	7	91502876	92077034	104	0.0757	NEUTRAL	NA	7	"AKAP9,ANKIB1,CYP51A1,GATAD1,KRIT1,LRRD1,MTERF1"
TCGA.AA.A00L.01A	7	91570339	91758152	57	0.2396	NEUTRAL	NA	2	"AKAP9,CYP51A1"
TCGA.AG.3909.01A	7	91643505	91674285	12	-0.3079	NEUTRAL	NA	1	AKAP9
TCGA.AA.3509.01A	7	91699307	92354893	126	0.0347	NEUTRAL	NA	10	"AKAP9,ANKIB1,CDK6,CYP51A1,FAM133B,GATAD1,KRIT1,LRRD1,PEX1,RBM48"
TCGA.CK.5914.01A	7	91715524	91731861	10	0.3203	NEUTRAL	NA	1	AKAP9
TCGA.AA.3861.01A	7	91727376	93628435	178	0.1582	NEUTRAL	NA	19	"AKAP9,ANKIB1,BET1,CALCR,CCDC132,CDK6,CYP51A1,FAM133B,GATAD1,GNG11,GNGT1,HEPACAM2,KRIT1,LRRD1,PEX1,RBM48,SAMD9,SAMD9L,TFPI2"
TCGA.AA.3862.01A	7	91727376	94043460	200	0.0736	NEUTRAL	NA	20	"AKAP9,ANKIB1,BET1,CALCR,CCDC132,CDK6,COL1A2,CYP51A1,FAM133B,GATAD1,GNG11,GNGT1,HEPACAM2,KRIT1,LRRD1,PEX1,RBM48,SAMD9,SAMD9L,TFPI2"
TCGA.CK.5914.01A	7	91734958	91924281	38	-0.1049	NEUTRAL	NA	5	"AKAP9,ANKIB1,CYP51A1,KRIT1,LRRD1"
TCGA.AA.A00N.01A	7	91736580	91742932	4	-0.2118	NEUTRAL	NA	2	"AKAP9,CYP51A1"
TCGA.AG.3909.01A	7	91747782	91763469	8	-0.4238	NEUTRAL	NA	1	CYP51A1
TCGA.AA.A00L.01A	7	91761056	97481551	288	-0.1251	NEUTRAL	NA	37	"ANKIB1,ASB4,ASNS,BET1,C7orf76,CALCR,CASD1,CCDC132,CDK6,COL1A2,CYP51A1,DLX5,DLX6,DYNC1I1,FAM133B,GATAD1,GNG11,GNGT1,HEPACAM2,KRIT1,LRRD1,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,SAMD9,SAMD9L,SDHAF3,SGCE,SHFM1,SLC25A13,TAC1,TFPI2"
TCGA.A6.3808.01A	7	91788271	92143125	66	0.327	NEUTRAL	NA	5	"ANKIB1,GATAD1,KRIT1,LRRD1,PEX1"
TCGA.AA.A00N.01A	7	91792598	91855808	12	-0.0834	NEUTRAL	NA	2	"KRIT1,LRRD1"
TCGA.AG.3909.01A	7	91863716	91871311	7	-0.365	NEUTRAL	NA	1	KRIT1
TCGA.AG.A01W.01A	7	91970254	92044302	22	0.0926	NEUTRAL	NA	1	ANKIB1
TCGA.CK.5914.01A	7	91974250	92000744	5	0.2838	NEUTRAL	NA	1	ANKIB1
TCGA.AA.A010.01A	7	92078015	92151365	31	-0.397	NEUTRAL	NA	2	"GATAD1,PEX1"
TCGA.AA.A00N.01A	7	92098727	92140230	21	0.1387	NEUTRAL	NA	1	PEX1
TCGA.AA.3939.01A	7	92128969	128414514	2239	0.0946	NEUTRAL	NA	251	Too-Many
TCGA.CK.5914.01A	7	92140230	92158077	9	0.0141	NEUTRAL	NA	1	PEX1
TCGA.AG.A01N.01A	7	92140230	92210773	20	-0.4456	NEUTRAL	NA	3	"FAM133B,PEX1,RBM48"
TCGA.CI.6621	7	92147373	98282949	1561	0.022	NEUTRAL	NA	39	"ASB4,ASNS,BAIAP2L1,BET1,BHLHA15,BRI3,C7orf76,CALCR,CASD1,CCDC132,CDK6,COL1A2,DLX5,DLX6,DYNC1I1,FAM133B,GNG11,GNGT1,HEPACAM2,LMTK2,NPTX2,OCM2,PDK4,PEG10,PEX1,PON1,PON2,PON3,PPP1R9A,RBM48,SAMD9,SAMD9L,SDHAF3,SGCE,SHFM1,SLC25A13,TAC1,TECPR1,TFPI2"
TCGA.AA.A010.01A	7	92157569	93067319	65	0.1791	NEUTRAL	NA	9	"CALCR,CCDC132,CDK6,FAM133B,HEPACAM2,PEX1,RBM48,SAMD9,SAMD9L"
TCGA.AG.3891.01A	7	92158738	92210773	12	0.2187	NEUTRAL	NA	2	"FAM133B,RBM48"
TCGA.AG.A008.01A	7	92158738	92252276	14	0.0278	NEUTRAL	NA	3	"CDK6,FAM133B,RBM48"
TCGA.AG.A023.01A	7	92219496	93540055	69	0.2941	NEUTRAL	NA	9	"CALCR,CCDC132,CDK6,FAM133B,GNGT1,HEPACAM2,SAMD9,SAMD9L,TFPI2"
TCGA.AG.3891.01A	7	92219496	94855226	152	-0.3386	NEUTRAL	NA	16	"BET1,CALCR,CASD1,CCDC132,CDK6,COL1A2,FAM133B,GNG11,GNGT1,HEPACAM2,PEG10,PPP1R9A,SAMD9,SAMD9L,SGCE,TFPI2"
TCGA.AA.3850	7	92263349	96539870	1156	-0.40265	NEUTRAL	NA	24	"ASB4,BET1,C7orf76,CALCR,CASD1,CCDC132,CDK6,COL1A2,DYNC1I1,GNG11,GNGT1,HEPACAM2,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SAMD9,SAMD9L,SGCE,SHFM1,SLC25A13,TFPI2"
TCGA.AA.A00D.01A	7	92300689	92861711	18	-0.2477	NEUTRAL	NA	5	"CCDC132,CDK6,HEPACAM2,SAMD9,SAMD9L"
TCGA.AG.A008.01A	7	92300689	158935086	3927	-0.2198	NEUTRAL	NA	469	Too-Many
TCGA.AA.A00D.01A	7	92869155	92901900	9	0.1633	NEUTRAL	NA	1	CCDC132
TCGA.CK.5914.01A	7	92869155	93063509	28	0.2379	NEUTRAL	NA	2	"CALCR,CCDC132"
TCGA.AA.A00D.01A	7	92905430	93116181	14	-0.2079	NEUTRAL	NA	2	"CALCR,CCDC132"
TCGA.AA.A00N.01A	7	93112032	94037085	26	-0.4639	NEUTRAL	NA	6	"BET1,CALCR,COL1A2,GNG11,GNGT1,TFPI2"
TCGA.AA.3844	7	93136811	93236509	32	-0.0386	NEUTRAL	NA	1	CALCR
TCGA.AA.3941	7	93136811	93236701	33	-0.3295	NEUTRAL	NA	1	CALCR
TCGA.AA.3982	7	93152061	93236509	25	-0.2292	NEUTRAL	NA	1	CALCR
TCGA.AA.3982	7	93256221	93340579	18	0.0624	NEUTRAL	NA	0	None
TCGA.AA.3941	7	93256221	93353041	22	0.1218	NEUTRAL	NA	0	None
TCGA.AA.3844	7	93256221	97620690	1177	0.2337	NEUTRAL	NA	24	"ASB4,ASNS,BET1,C7orf76,CASD1,COL1A2,DLX5,DLX6,DYNC1I1,GNG11,GNGT1,OCM2,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SDHAF3,SGCE,SHFM1,SLC25A13,TAC1,TFPI2"
TCGA.AA.3982	7	93369642	93638887	79	-0.1288	NEUTRAL	NA	4	"BET1,GNG11,GNGT1,TFPI2"
TCGA.AA.3941	7	93392222	94033336	187	-0.0558	NEUTRAL	NA	5	"BET1,COL1A2,GNG11,GNGT1,TFPI2"
TCGA.AA.3811	7	93396281	97625643	1142	-0.0751	NEUTRAL	NA	24	"ASB4,ASNS,BET1,C7orf76,CASD1,COL1A2,DLX5,DLX6,DYNC1I1,GNG11,GNGT1,OCM2,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SDHAF3,SGCE,SHFM1,SLC25A13,TAC1,TFPI2"
TCGA.CK.5914.01A	7	93516079	93555355	9	-0.3225	NEUTRAL	NA	3	"GNG11,GNGT1,TFPI2"
TCGA.AA.A00D.01A	7	93516079	94037085	24	0.3527	NEUTRAL	NA	5	"BET1,COL1A2,GNG11,GNGT1,TFPI2"
TCGA.AG.A01N.01A	7	93516079	94046989	36	0.0352	NEUTRAL	NA	5	"BET1,COL1A2,GNG11,GNGT1,TFPI2"
TCGA.AA.A01C.01A	7	93536015	94046989	31	0.1197	NEUTRAL	NA	4	"BET1,COL1A2,GNG11,GNGT1"
TCGA.AG.A023.01A	7	93551398	94038597	19	-0.3293	NEUTRAL	NA	3	"BET1,COL1A2,GNG11"
TCGA.AG.3909.01A	7	93551398	94039499	21	-0.0372	NEUTRAL	NA	3	"BET1,COL1A2,GNG11"
TCGA.AA.3982	7	93663885	97257697	989	0.0489	NEUTRAL	NA	17	"ASB4,C7orf76,CASD1,COL1A2,DLX5,DLX6,DYNC1I1,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SDHAF3,SGCE,SHFM1,SLC25A13"
TCGA.CK.5914.01A	7	94024280	94044464	22	-0.1639	NEUTRAL	NA	1	COL1A2
TCGA.AA.3815.01A	7	94027645	94059512	37	-0.4336	NEUTRAL	NA	1	COL1A2
TCGA.AA.A00D.01A	7	94037435	94285252	57	-0.1046	NEUTRAL	NA	3	"CASD1,COL1A2,SGCE"
TCGA.AA.3941	7	94038933	94580775	110	0.2409	NEUTRAL	NA	5	"CASD1,COL1A2,PEG10,PPP1R9A,SGCE"
TCGA.AG.A023.01A	7	94043460	94046989	4	-0.257	NEUTRAL	NA	1	COL1A2
TCGA.AA.A010.01A	7	94044464	94139360	19	-0.0738	NEUTRAL	NA	2	"CASD1,COL1A2"
TCGA.AG.A023.01A	7	94047751	94292847	43	0.3767	NEUTRAL	NA	4	"CASD1,COL1A2,PEG10,SGCE"
TCGA.AA.A024.01A	7	94056952	97369120	143	-0.0387	NEUTRAL	NA	18	"ASB4,C7orf76,CASD1,COL1A2,DLX5,DLX6,DYNC1I1,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SDHAF3,SGCE,SHFM1,SLC25A13,TAC1"
TCGA.AA.3862.01A	7	94057576	99117745	368	0.1444	NEUTRAL	NA	41	"ARPC1A,ARPC1B,ASB4,ASNS,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,C7orf76,CASD1,COL1A2,CPSF4,DLX5,DLX6,DYNC1I1,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,PTCD1,SDHAF3,SGCE,SHFM1,SLC25A13,SMURF1,TAC1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF789"
TCGA.AA.3861.01A	7	94057576	116502633	1585	0.2424	NEUTRAL	NA	188	Too-Many
TCGA.AA.3815.01A	7	94139360	158936978	4110	-0.0155	NEUTRAL	NA	458	Too-Many
TCGA.AG.3909.01A	7	94146824	94162944	6	-0.0067	NEUTRAL	NA	1	CASD1
TCGA.AA.A00N.01A	7	94162944	94184764	12	0.3234	NEUTRAL	NA	1	CASD1
TCGA.AA.A010.01A	7	94214712	96653574	114	0.0043	NEUTRAL	NA	14	"ASB4,C7orf76,DLX5,DLX6,DYNC1I1,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SGCE,SHFM1,SLC25A13"
TCGA.AA.A00N.01A	7	94252573	94292847	5	-0.007	NEUTRAL	NA	2	"PEG10,SGCE"
TCGA.AG.3909.01A	7	94292847	94539379	5	-0.4507	NEUTRAL	NA	2	"PEG10,PPP1R9A"
TCGA.AA.A00D.01A	7	94292847	95614160	66	0.271	NEUTRAL	NA	8	"ASB4,DYNC1I1,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A"
TCGA.AG.A023.01A	7	94539379	103003748	854	-0.1677	NEUTRAL	NA	136	Too-Many
TCGA.AG.A01W.01A	7	94769423	94778649	4	-0.3385	NEUTRAL	NA	1	PPP1R9A
TCGA.AA.3941	7	94852634	95289303	183	0.2055	NEUTRAL	NA	6	"ASB4,PDK4,PON1,PON2,PON3,PPP1R9A"
TCGA.AG.3891.01A	7	94897815	97873836	134	-0.2151	NEUTRAL	NA	19	"ASB4,ASNS,BHLHA15,C7orf76,DLX5,DLX6,DYNC1I1,LMTK2,OCM2,PDK4,PON1,PON2,PON3,PPP1R9A,SDHAF3,SHFM1,SLC25A13,TAC1,TECPR1"
TCGA.AA.A01C.01A	7	94915480	94944587	10	0.0378	NEUTRAL	NA	2	"PON1,PPP1R9A"
TCGA.CK.5914.01A	7	94928206	95214903	32	0.1062	NEUTRAL	NA	5	"ASB4,PDK4,PON1,PON2,PON3"
TCGA.AA.A00N.01A	7	94937274	95166842	29	-0.4237	NEUTRAL	NA	4	"ASB4,PON1,PON2,PON3"
TCGA.AG.3909.01A	7	94940721	95225428	38	-0.1756	NEUTRAL	NA	5	"ASB4,PDK4,PON1,PON2,PON3"
TCGA.AG.A00C.01A	7	94940721	95434024	39	0.2759	NEUTRAL	NA	6	"ASB4,DYNC1I1,PDK4,PON1,PON2,PON3"
TCGA.AA.A01T	7	94969599	126124216	7564	0.3133	NEUTRAL	NA	215	Too-Many
TCGA.AA.A01C.01A	7	95216683	95222072	6	-0.047	NEUTRAL	NA	1	PDK4
TCGA.AA.3941	7	95306072	95720943	142	0.1267	NEUTRAL	NA	1	DYNC1I1
TCGA.DM.A0XD	7	95314174	110320304	3799	0.0241	NEUTRAL	NA	161	Too-Many
TCGA.A6.A56B	7	95314689	159119219	17311	-0.0184	NEUTRAL	NA	449	Too-Many
TCGA.DC.6682	7	95436904	95437649	2	0.0155	NEUTRAL	NA	1	DYNC1I1
TCGA.DC.6682	7	95438060	159119219	17354	-0.3821	NEUTRAL	NA	449	Too-Many
TCGA.AG.A00C.01A	7	95439667	95813542	22	-0.2125	NEUTRAL	NA	2	"DYNC1I1,SLC25A13"
TCGA.AA.A00D.01A	7	95616316	95705361	7	-0.3664	NEUTRAL	NA	1	DYNC1I1
TCGA.AA.A00D.01A	7	95709628	99260372	248	0.2909	NEUTRAL	NA	36	"ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,C7orf76,CPSF4,CYP3A5,DLX5,DLX6,DYNC1I1,FAM200A,GS1-259H13.2,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SDHAF3,SHFM1,SLC25A13,SMURF1,TAC1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AA.3509.01A	7	95709628	102279510	848	-0.115	NEUTRAL	NA	121	Too-Many
TCGA.A6.3808.01A	7	95750936	100674349	676	-0.009	NEUTRAL	NA	91	"ACHE,ACTL6B,AGFG2,AP4M1,ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BHLHA15,BRI3,BUD31,C7orf43,C7orf61,C7orf76,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,DLX5,DLX6,EPHB4,EPO,FAM200A,FBXO24,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,GS1-259H13.2,KPNA7,LAMTOR4,LMTK2,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,MUC12,MUC17,MUC3A,NPTX2,NYAP1,OCM2,OR2AE1,PCOLCE,PDAP1,PILRA,PILRB,POP7,PPP1R35,PTCD1,PVRIG,SAP25,SDHAF3,SHFM1,SLC12A9,SLC25A13,SMURF1,SPDYE3,SRRT,STAG3,TAC1,TAF6,TECPR1,TFR2,TMEM130,TRIM4,TRIP6,TRRAP,TSC22D4,UFSP1,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AG.A00C.01A	7	95814196	99463480	290	0.0902	NEUTRAL	NA	39	"ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,C7orf76,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,DLX5,DLX6,FAM200A,GS1-259H13.2,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SDHAF3,SHFM1,SLC25A13,SMURF1,TAC1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AA.3941	7	96131102	96540427	131	-0.0509	NEUTRAL	NA	2	"C7orf76,SHFM1"
TCGA.AG.A01N.01A	7	96338936	103007840	794	0.0762	NEUTRAL	NA	127	Too-Many
TCGA.G5.6233	7	96444599	96466046	13	-0.2412	NEUTRAL	NA	0	None
TCGA.G5.6233	7	96469103	159083499	17082	0.0346	NEUTRAL	NA	445	Too-Many
TCGA.AA.3850	7	96540427	97143614	154	0.07105	NEUTRAL	NA	3	"DLX5,DLX6,SDHAF3"
TCGA.CK.5914.01A	7	96635246	97498223	24	-0.438	NEUTRAL	NA	5	"ASNS,DLX5,DLX6,SDHAF3,TAC1"
TCGA.AA.A01C.01A	7	96636928	97991610	63	0.1186	NEUTRAL	NA	11	"ASNS,BAIAP2L1,BHLHA15,BRI3,DLX5,DLX6,LMTK2,OCM2,SDHAF3,TAC1,TECPR1"
TCGA.AA.A02E.01A	7	96636928	98563267	114	-0.3265	NEUTRAL	NA	14	"ASNS,BAIAP2L1,BHLHA15,BRI3,DLX5,DLX6,LMTK2,NPTX2,OCM2,SDHAF3,TAC1,TECPR1,TMEM130,TRRAP"
TCGA.AG.A01J.01A	7	96636928	99270161	233	-0.0423	NEUTRAL	NA	32	"ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,CPSF4,CYP3A5,DLX5,DLX6,FAM200A,GS1-259H13.2,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SDHAF3,SMURF1,TAC1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AA.A02H.01A	7	96636928	99277388	232	-0.0158	NEUTRAL	NA	32	"ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,CPSF4,CYP3A5,DLX5,DLX6,FAM200A,GS1-259H13.2,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SDHAF3,SMURF1,TAC1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AA.A004.01A	7	96636928	100485636	557	-0.0455	NEUTRAL	NA	83	"ACTL6B,AGFG2,AP4M1,ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BHLHA15,BRI3,BUD31,C7orf43,C7orf61,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,DLX5,DLX6,EPHB4,EPO,FAM200A,FBXO24,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,GS1-259H13.2,KPNA7,LAMTOR4,LMTK2,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,NPTX2,NYAP1,OCM2,OR2AE1,PCOLCE,PDAP1,PILRA,PILRB,POP7,PPP1R35,PTCD1,PVRIG,SAP25,SDHAF3,SLC12A9,SMURF1,SPDYE3,SRRT,STAG3,TAC1,TAF6,TECPR1,TFR2,TMEM130,TRIM4,TRIP6,TRRAP,TSC22D4,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AG.A025.01A	7	96636928	102582643	755	-0.3795	NEUTRAL	NA	120	Too-Many
TCGA.AA.A017.01A	7	96639057	99220120	212	-0.1	NEUTRAL	NA	31	"ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,CPSF4,DLX5,DLX6,FAM200A,GS1-259H13.2,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SDHAF3,SMURF1,TAC1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AG.3611.01A	7	96650011	96653574	3	-0.1197	NEUTRAL	NA	1	DLX5
TCGA.AG.4009.01A	7	96746999	97369120	8	0.1057	NEUTRAL	NA	2	"SDHAF3,TAC1"
TCGA.AA.3850	7	97157751	97285624	33	0.04895	NEUTRAL	NA	0	None
TCGA.AA.3982	7	97269149	97464974	50	0.2794	NEUTRAL	NA	1	TAC1
TCGA.AA.3850	7	97312448	97464974	39	-0.06115	NEUTRAL	NA	1	TAC1
TCGA.AG.A01W.01A	7	97319497	97336109	10	0.0999	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	7	97363494	97800802	24	0.3395	NEUTRAL	NA	4	"ASNS,LMTK2,OCM2,TAC1"
TCGA.AG.A01W.01A	7	97452119	97626534	9	-0.3684	NEUTRAL	NA	2	"ASNS,OCM2"
TCGA.AA.A024.01A	7	97481551	97923308	40	0.2656	NEUTRAL	NA	7	"ASNS,BAIAP2L1,BHLHA15,BRI3,LMTK2,OCM2,TECPR1"
TCGA.AA.A00L.01A	7	97482371	99015000	164	0.216	NEUTRAL	NA	18	"ARPC1A,ARPC1B,ASNS,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SMURF1,TECPR1,TMEM130,TRRAP"
TCGA.AY.A8YK	7	97593661	159119219	16798	0.161	NEUTRAL	NA	440	Too-Many
TCGA.AA.A00N.01A	7	97614182	97800802	10	0.1741	NEUTRAL	NA	2	"LMTK2,OCM2"
TCGA.AA.3811	7	97637175	103071092	818	0.3453	NEUTRAL	NA	120	Too-Many
TCGA.AG.A01W.01A	7	97761245	98094377	14	0.1406	NEUTRAL	NA	5	"BAIAP2L1,BHLHA15,BRI3,LMTK2,TECPR1"
TCGA.AG.3906.01A	7	97766585	98257714	38	0.189	NEUTRAL	NA	6	"BAIAP2L1,BHLHA15,BRI3,LMTK2,NPTX2,TECPR1"
TCGA.AA.A02F.01A	7	97780654	97870126	12	-0.2271	NEUTRAL	NA	3	"BHLHA15,LMTK2,TECPR1"
TCGA.AG.3909.01A	7	97784023	97860236	18	0.1357	NEUTRAL	NA	3	"BHLHA15,LMTK2,TECPR1"
TCGA.CK.5914.01A	7	97784023	98771274	143	-0.1445	NEUTRAL	NA	10	"BAIAP2L1,BHLHA15,BRI3,KPNA7,LMTK2,NPTX2,SMURF1,TECPR1,TMEM130,TRRAP"
TCGA.AA.A00N.01A	7	97814308	97923308	34	-0.4339	NEUTRAL	NA	5	"BAIAP2L1,BHLHA15,BRI3,LMTK2,TECPR1"
TCGA.AA.A029.01A	7	97814308	98635981	103	-0.1156	NEUTRAL	NA	9	"BAIAP2L1,BHLHA15,BRI3,LMTK2,NPTX2,SMURF1,TECPR1,TMEM130,TRRAP"
TCGA.AG.4009.01A	7	97820003	98503748	51	0.0899	NEUTRAL	NA	8	"BAIAP2L1,BHLHA15,BRI3,LMTK2,NPTX2,TECPR1,TMEM130,TRRAP"
TCGA.AA.A01K.01A	7	97841571	103038319	730	-0.2162	NEUTRAL	NA	119	Too-Many
TCGA.AA.A010.01A	7	97854083	97875207	14	-0.427	NEUTRAL	NA	1	TECPR1
TCGA.AG.3891.01A	7	97911626	98509618	41	0.2001	NEUTRAL	NA	5	"BAIAP2L1,BRI3,NPTX2,TMEM130,TRRAP"
TCGA.AA.A02K.01A	7	97911627	99779665	336	0.3512	NEUTRAL	NA	45	"AP4M1,ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BRI3,BUD31,C7orf43,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,FAM200A,GAL3ST4,GJC3,GPC2,GS1-259H13.2,KPNA7,LAMTOR4,MBLAC1,MCM7,NPTX2,OR2AE1,PDAP1,PTCD1,SMURF1,STAG3,TAF6,TMEM130,TRIM4,TRRAP,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AA.A02F.01A	7	97920371	99273686	179	-0.3041	NEUTRAL	NA	23	"ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BRI3,BUD31,CPSF4,CYP3A5,FAM200A,GS1-259H13.2,KPNA7,NPTX2,PDAP1,PTCD1,SMURF1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AA.A00N.01A	7	97933460	98460709	22	0.0925	NEUTRAL	NA	3	"BAIAP2L1,NPTX2,TMEM130"
TCGA.AA.A024.01A	7	97933460	158705625	3647	0.0208	NEUTRAL	NA	434	Too-Many
TCGA.AA.A00O.01A	7	97941377	102759985	670	-0.3066	NEUTRAL	NA	112	Too-Many
TCGA.A6.5667	7	97969139	159119219	16716	0.3165	NEUTRAL	NA	435	Too-Many
TCGA.AA.A01Q.01A	7	97984296	98963437	106	-0.0155	NEUTRAL	NA	7	"ARPC1A,BAIAP2L1,KPNA7,NPTX2,SMURF1,TMEM130,TRRAP"
TCGA.AG.A01W.01A	7	98095604	98298646	8	-0.323	NEUTRAL	NA	1	NPTX2
TCGA.AA.A01C.01A	7	98256430	99250149	163	-0.0361	NEUTRAL	NA	21	"ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,BUD31,CPSF4,CYP3A5,FAM200A,GS1-259H13.2,KPNA7,NPTX2,PDAP1,PTCD1,SMURF1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AG.A01W.01A	7	98345596	98386419	21	0.1989	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	7	98388675	98394852	5	-0.344	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	7	98486422	98631587	15	-0.01	NEUTRAL	NA	2	"SMURF1,TRRAP"
TCGA.AG.3906.01A	7	98487911	98775496	81	-0.1668	NEUTRAL	NA	3	"KPNA7,SMURF1,TRRAP"
TCGA.AG.A01L.01A	7	98500975	98519344	10	-0.2766	NEUTRAL	NA	1	TRRAP
TCGA.AA.A00N.01A	7	98506312	98567685	35	0.2986	NEUTRAL	NA	1	TRRAP
TCGA.AG.A014.01A	7	98506312	98648936	67	0.334	NEUTRAL	NA	2	"SMURF1,TRRAP"
TCGA.AG.3909.01A	7	98513294	98567685	30	0.0023	NEUTRAL	NA	1	TRRAP
TCGA.AG.3891.01A	7	98513294	98658175	65	-0.0703	NEUTRAL	NA	2	"SMURF1,TRRAP"
TCGA.AG.A01L.01A	7	98522683	98546162	12	0.1134	NEUTRAL	NA	1	TRRAP
TCGA.AA.3529	7	98523372	146092957	12321	-0.0165	NEUTRAL	NA	352	Too-Many
TCGA.AG.A01L.01A	7	98547012	98558864	9	-0.2606	NEUTRAL	NA	1	TRRAP
TCGA.AG.A01L.01A	7	98559878	99017568	66	0.0811	NEUTRAL	NA	9	"ARPC1A,ARPC1B,ATP5J2-PTCD1,BUD31,KPNA7,PDAP1,PTCD1,SMURF1,TRRAP"
TCGA.AA.A00N.01A	7	98602703	98804978	32	0.3321	NEUTRAL	NA	3	"KPNA7,SMURF1,TRRAP"
TCGA.AG.A01W.01A	7	98638614	98821206	12	-0.3486	NEUTRAL	NA	2	"KPNA7,SMURF1"
TCGA.AA.A029.01A	7	98645259	100352802	357	0.1129	NEUTRAL	NA	65	"ACTL6B,AGFG2,AP4M1,ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,AZGP1,BUD31,C7orf43,C7orf61,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,EPO,FAM200A,FBXO24,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,GS1-259H13.2,KPNA7,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,NYAP1,OR2AE1,PCOLCE,PDAP1,PILRA,PILRB,POP7,PPP1R35,PTCD1,PVRIG,SAP25,SMURF1,SPDYE3,STAG3,TAF6,TFR2,TRIM4,TSC22D4,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AA.A02E.01A	7	98658175	100364591	360	-0.0513	NEUTRAL	NA	65	"ACTL6B,AGFG2,AP4M1,ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,AZGP1,BUD31,C7orf43,C7orf61,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,EPO,FAM200A,FBXO24,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,GS1-259H13.2,KPNA7,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,NYAP1,OR2AE1,PCOLCE,PDAP1,PILRA,PILRB,POP7,PPP1R35,PTCD1,PVRIG,SAP25,SMURF1,SPDYE3,STAG3,TAF6,TFR2,TRIM4,TSC22D4,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AA.A010.01A	7	98741275	98992003	28	-0.0402	NEUTRAL	NA	4	"ARPC1A,ARPC1B,KPNA7,SMURF1"
TCGA.AG.A01W.01A	7	98833405	98855530	9	-0.0642	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	7	98874594	98982596	30	-0.2298	NEUTRAL	NA	2	"ARPC1A,ARPC1B"
TCGA.AG.3906.01A	7	98930907	99008665	21	0.1192	NEUTRAL	NA	4	"ARPC1A,ARPC1B,BUD31,PDAP1"
TCGA.CK.5914.01A	7	98930907	99250149	78	-0.0916	NEUTRAL	NA	16	"ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,BUD31,CPSF4,CYP3A5,FAM200A,GS1-259H13.2,PDAP1,PTCD1,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AG.4009.01A	7	98935782	99002429	19	0.3126	NEUTRAL	NA	3	"ARPC1A,ARPC1B,PDAP1"
TCGA.AG.A01W.01A	7	98996068	99059570	10	0.192	NEUTRAL	NA	6	"ATP5J2,ATP5J2-PTCD1,BUD31,CPSF4,PDAP1,PTCD1"
TCGA.AA.A00L.01A	7	99016941	99042347	10	-0.3886	NEUTRAL	NA	4	"ATP5J2-PTCD1,BUD31,CPSF4,PTCD1"
TCGA.AG.A01L.01A	7	99026675	99995422	218	0.1654	NEUTRAL	NA	39	"AP4M1,ATP5J2,ATP5J2-PTCD1,AZGP1,C7orf43,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,FAM200A,GAL3ST4,GATS,GJC3,GPC2,GS1-259H13.2,LAMTOR4,MBLAC1,MCM7,OR2AE1,PILRA,PILRB,PTCD1,PVRIG,SPDYE3,STAG3,TAF6,TRIM4,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AG.3909.01A	7	99036657	99092191	19	0.1613	NEUTRAL	NA	5	"ATP5J2,ATP5J2-PTCD1,CPSF4,ZNF394,ZNF789"
TCGA.AA.A00L.01A	7	99045697	99250149	42	0.3783	NEUTRAL	NA	11	"ATP5J2,ATP5J2-PTCD1,CPSF4,CYP3A5,FAM200A,GS1-259H13.2,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AG.4009.01A	7	99047860	99057661	8	0.1851	NEUTRAL	NA	3	"ATP5J2,ATP5J2-PTCD1,CPSF4"
TCGA.AG.3906.01A	7	99047860	99144292	27	0.2802	NEUTRAL	NA	7	"ATP5J2,ATP5J2-PTCD1,CPSF4,FAM200A,ZKSCAN5,ZNF394,ZNF789"
TCGA.AA.A01Q.01A	7	99047860	99673153	115	0.0624	NEUTRAL	NA	22	"ATP5J2,ATP5J2-PTCD1,AZGP1,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,FAM200A,GJC3,GS1-259H13.2,OR2AE1,TRIM4,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AG.A01W.01A	7	99064740	99085596	4	-0.0708	NEUTRAL	NA	1	ZNF789
TCGA.AG.3909.01A	7	99128684	99159483	6	0.189	NEUTRAL	NA	3	"FAM200A,ZKSCAN5,ZNF655"
TCGA.AG.A01W.01A	7	99157781	99533134	68	0.1738	NEUTRAL	NA	11	"CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,GJC3,GS1-259H13.2,OR2AE1,TRIM4,ZNF655,ZSCAN25"
TCGA.AG.3906.01A	7	99158131	99262762	19	-0.1683	NEUTRAL	NA	4	"CYP3A5,GS1-259H13.2,ZNF655,ZSCAN25"
TCGA.AG.3891.01A	7	99158131	99363937	43	-0.0856	NEUTRAL	NA	7	"CYP3A4,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,GS1-259H13.2,ZNF655,ZSCAN25"
TCGA.AA.3982	7	99186825	99382935	30	-0.0315	NEUTRAL	NA	6	"CYP3A4,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,GS1-259H13.2,ZSCAN25"
TCGA.AA.3941	7	99186825	99385682	31	0.2527	NEUTRAL	NA	6	"CYP3A4,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,GS1-259H13.2,ZSCAN25"
TCGA.AA.3844	7	99186825	99388999	32	0.2242	NEUTRAL	NA	6	"CYP3A4,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,GS1-259H13.2,ZSCAN25"
TCGA.AA.A017.01A	7	99221643	100371292	294	0.1873	NEUTRAL	NA	49	"ACTL6B,AGFG2,AP4M1,AZGP1,C7orf43,C7orf61,CNPY4,COPS6,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,EPO,FBXO24,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,NYAP1,OR2AE1,PCOLCE,PILRA,PILRB,POP7,PPP1R35,PVRIG,SAP25,SPDYE3,STAG3,TAF6,TFR2,TRIM4,TSC22D4,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZSCAN21,ZSCAN25"
TCGA.AA.3850	7	99240178	99385682	25	-0.40765	NEUTRAL	NA	4	"CYP3A4,CYP3A5,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AA.A010.01A	7	99245879	99995422	180	-0.0652	NEUTRAL	NA	28	"AP4M1,AZGP1,C7orf43,CNPY4,COPS6,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,GAL3ST4,GATS,GJC3,GPC2,LAMTOR4,MBLAC1,MCM7,OR2AE1,PILRA,PILRB,PVRIG,SPDYE3,STAG3,TAF6,TRIM4,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AA.A00L.01A	7	99258085	99627442	68	-0.003	NEUTRAL	NA	10	"AZGP1,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,GJC3,OR2AE1,TRIM4,ZKSCAN1"
TCGA.AA.A00D.01A	7	99261580	99370166	31	-0.1012	NEUTRAL	NA	4	"CYP3A4,CYP3A5,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AG.4009.01A	7	99264190	99753243	117	0.3036	NEUTRAL	NA	20	"AP4M1,AZGP1,C7orf43,CNPY4,COPS6,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,GJC3,LAMTOR4,MBLAC1,MCM7,OR2AE1,TAF6,TRIM4,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AG.3906.01A	7	99303094	100014642	179	0.1123	NEUTRAL	NA	28	"AP4M1,AZGP1,C7orf43,CNPY4,COPS6,CYP3A4,CYP3A43,CYP3A7,CYP3A7-CYP3A51P,GAL3ST4,GATS,GJC3,GPC2,LAMTOR4,MBLAC1,MCM7,OR2AE1,PILRA,PILRB,PVRIG,SPDYE3,STAG3,TAF6,TRIM4,ZCWPW1,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AG.3891.01A	7	99364707	100253373	237	0.2662	NEUTRAL	NA	40	"ACTL6B,AGFG2,AP4M1,AZGP1,C7orf43,C7orf61,CNPY4,COPS6,CYP3A4,CYP3A43,FBXO24,GAL3ST4,GATS,GJC3,GPC2,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,NYAP1,OR2AE1,PCOLCE,PILRA,PILRB,PPP1R35,PVRIG,SAP25,SPDYE3,STAG3,TAF6,TFR2,TRIM4,TSC22D4,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AA.A00D.01A	7	99375587	100470762	261	0.2473	NEUTRAL	NA	48	"ACTL6B,AGFG2,AP4M1,AZGP1,C7orf43,C7orf61,CNPY4,COPS6,CYP3A4,CYP3A43,EPHB4,EPO,FBXO24,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,NYAP1,OR2AE1,PCOLCE,PILRA,PILRB,POP7,PPP1R35,PVRIG,SAP25,SLC12A9,SPDYE3,STAG3,TAF6,TFR2,TRIM4,TRIP6,TSC22D4,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AA.A02F.01A	7	99377563	99697580	59	-0.0452	NEUTRAL	NA	11	"AZGP1,COPS6,CYP3A4,CYP3A43,GJC3,MCM7,OR2AE1,TRIM4,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AA.3530	7	99388999	102760510	440	0.3347	NEUTRAL	NA	87	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,AP4M1,ARMC10,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CUX1,CYP3A43,EPHB4,EPO,FAM185A,FBXL13,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,LRRC17,LRWD1,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAPEPLD,NAT16,NYAP1,OR2AE1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,POLR2J,POLR2J2,POLR2J3,POP7,PPP1R35,PRKRIP1,PVRIG,RASA4,RASA4B,SAP25,SERPINE1,SH2B2,SLC12A9,SPDYE2,SPDYE2B,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,UPK3BL,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AA.A01C.01A	7	99461129	103003748	526	-0.0283	NEUTRAL	NA	91	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,AP4M1,ARMC10,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CUX1,CYP3A43,DNAJC2,EPHB4,EPO,FAM185A,FBXL13,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,LRRC17,LRWD1,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAPEPLD,NAT16,NYAP1,OR2AE1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,POP7,PPP1R35,PRKRIP1,PSMC2,PVRIG,RASA4,RASA4B,SAP25,SERPINE1,SH2B2,SLC12A9,SLC26A5,SPDYE2,SPDYE2B,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,UPK3BL,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AG.A01J.01A	7	99463480	103003748	495	0.0284	NEUTRAL	NA	91	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,AP4M1,ARMC10,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CUX1,CYP3A43,DNAJC2,EPHB4,EPO,FAM185A,FBXL13,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,LRRC17,LRWD1,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAPEPLD,NAT16,NYAP1,OR2AE1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,POP7,PPP1R35,PRKRIP1,PSMC2,PVRIG,RASA4,RASA4B,SAP25,SERPINE1,SH2B2,SLC12A9,SLC26A5,SPDYE2,SPDYE2B,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,UPK3BL,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AG.3909.01A	7	99473638	99514276	8	-0.5073	NEUTRAL	NA	2	"OR2AE1,TRIM4"
TCGA.CK.5914.01A	7	99473638	99526436	11	-0.5113	NEUTRAL	NA	3	"GJC3,OR2AE1,TRIM4"
TCGA.AA.A02H.01A	7	99473638	103032017	496	0.0202	NEUTRAL	NA	90	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,AP4M1,ARMC10,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CUX1,DNAJC2,EPHB4,EPO,FAM185A,FBXL13,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,LRRC17,LRWD1,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAPEPLD,NAT16,NYAP1,OR2AE1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,POP7,PPP1R35,PRKRIP1,PSMC2,PVRIG,RASA4,RASA4B,SAP25,SERPINE1,SH2B2,SLC12A9,SLC26A5,SPDYE2,SPDYE2B,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,UPK3BL,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AG.A00C.01A	7	99526814	99573514	5	-0.1433	NEUTRAL	NA	2	"AZGP1,GJC3"
TCGA.AA.A00N.01A	7	99526814	99655309	12	0.2745	NEUTRAL	NA	4	"AZGP1,GJC3,ZKSCAN1,ZSCAN21"
TCGA.CK.5914.01A	7	99526814	99686553	19	0.3506	NEUTRAL	NA	5	"AZGP1,GJC3,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AG.A01W.01A	7	99541725	99646947	60	-0.0188	NEUTRAL	NA	2	"AZGP1,ZKSCAN1"
TCGA.AF.2692	7	99545308	101009714	133	-0.3403	NEUTRAL	NA	61	"ACHE,ACTL6B,AGFG2,AP1S1,AP4M1,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,EPHB4,EPO,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GNB2,GPC2,IFT22,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,NAT16,NYAP1,PCOLCE,PILRA,PILRB,PLOD3,POP7,PPP1R35,PVRIG,SAP25,SERPINE1,SLC12A9,SPDYE3,SRRT,STAG3,TAF6,TFR2,TRIM56,TRIP6,TSC22D4,UFSP1,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AG.A00C.01A	7	99621163	100320593	211	0.3765	NEUTRAL	NA	38	"ACTL6B,AGFG2,AP4M1,C7orf43,C7orf61,CNPY4,COPS6,EPO,FBXO24,GAL3ST4,GATS,GIGYF1,GNB2,GPC2,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOSPD3,NYAP1,PCOLCE,PILRA,PILRB,POP7,PPP1R35,PVRIG,SAP25,SPDYE3,STAG3,TAF6,TFR2,TSC22D4,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AG.A01W.01A	7	99647309	99844057	30	0.3332	NEUTRAL	NA	15	"AP4M1,C7orf43,CNPY4,COPS6,GAL3ST4,GATS,GPC2,LAMTOR4,MBLAC1,MCM7,PVRIG,STAG3,TAF6,ZNF3,ZSCAN21"
TCGA.AA.A00L.01A	7	99686553	128116798	1311	-0.0254	NEUTRAL	NA	177	Too-Many
TCGA.NH.A50V	7	99695130	159119219	16314	0.0206	NEUTRAL	NA	401	Too-Many
TCGA.AA.A02F.01A	7	99701656	100349298	164	0.1033	NEUTRAL	NA	34	"ACTL6B,AGFG2,AP4M1,C7orf43,C7orf61,CNPY4,EPO,FBXO24,GAL3ST4,GATS,GIGYF1,GNB2,GPC2,LAMTOR4,LRCH4,MBLAC1,MEPCE,MOSPD3,NYAP1,PCOLCE,PILRA,PILRB,POP7,PPP1R35,PVRIG,SAP25,SPDYE3,STAG3,TAF6,TFR2,TSC22D4,ZAN,ZASP,ZCWPW1"
TCGA.CK.5914.01A	7	99703788	99724972	15	-0.2513	NEUTRAL	NA	4	"AP4M1,CNPY4,MBLAC1,TAF6"
TCGA.AA.A00N.01A	7	99703788	99778148	36	-0.4843	NEUTRAL	NA	9	"AP4M1,C7orf43,CNPY4,GAL3ST4,GPC2,LAMTOR4,MBLAC1,STAG3,TAF6"
TCGA.AG.3909.01A	7	99703788	99783775	38	-0.1829	NEUTRAL	NA	9	"AP4M1,C7orf43,CNPY4,GAL3ST4,GPC2,LAMTOR4,MBLAC1,STAG3,TAF6"
TCGA.AA.A02J.01A	7	99711187	107269201	663	0.3239	NEUTRAL	NA	99	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,ARMC10,ATXN7L1,BCAP29,C7orf43,C7orf61,CCDC71L,CDHR3,CLDN15,CNPY4,COG5,COL26A1,CUX1,DNAJC2,DUS4L,EPHB4,EPO,FAM185A,FBXL13,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GNB2,GPC2,GPR22,HBP1,IFT22,KMT2E,LAMTOR4,LHFPL3,LOC100289561,LRCH4,LRRC17,LRWD1,MBLAC1,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAMPT,NAPEPLD,NAT16,NYAP1,ORAI2,ORC5,PCOLCE,PIK3CG,PILRA,PILRB,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,POP7,PPP1R35,PRKAR2B,PRKRIP1,PSMC2,PUS7,PVRIG,RASA4,RASA4B,RELN,RINT1,SAP25,SERPINE1,SH2B2,SLC12A9,SLC26A5,SPDYE2,SPDYE2B,SPDYE3,SPDYE6,SRPK2,SRRT,STAG3,SYPL1,TAF6,TFR2,TRIM56,TRIP6,TSC22D4,UFSP1,UPK3BL,VGF,ZAN,ZASP,ZCWPW1,ZNHIT1"
TCGA.AA.A01Q.01A	7	99724972	99774661	21	-0.093	NEUTRAL	NA	5	"C7orf43,GAL3ST4,GPC2,LAMTOR4,MBLAC1"
TCGA.CK.5914.01A	7	99753982	99783775	18	-0.1174	NEUTRAL	NA	4	"C7orf43,GAL3ST4,GPC2,STAG3"
TCGA.AA.A02K.01A	7	99780305	100007015	53	0.0425	NEUTRAL	NA	7	"GATS,PILRA,PILRB,PVRIG,SPDYE3,STAG3,ZCWPW1"
TCGA.AG.4009.01A	7	99783775	99799807	16	0.2908	NEUTRAL	NA	2	"GATS,STAG3"
TCGA.AF.3914.01A	7	99783775	100161797	82	-0.0417	NEUTRAL	NA	13	"AGFG2,C7orf61,GATS,MEPCE,NYAP1,PILRA,PILRB,PPP1R35,PVRIG,SPDYE3,STAG3,TSC22D4,ZCWPW1"
TCGA.AA.A01Q.01A	7	99786408	100136938	53	-0.0093	NEUTRAL	NA	13	"AGFG2,C7orf61,GATS,MEPCE,NYAP1,PILRA,PILRB,PPP1R35,PVRIG,SPDYE3,STAG3,TSC22D4,ZCWPW1"
TCGA.AA.A00N.01A	7	99795374	99999465	36	0.1387	NEUTRAL	NA	7	"GATS,PILRA,PILRB,PVRIG,SPDYE3,STAG3,ZCWPW1"
TCGA.AA.A00K.01A	7	99798395	158935086	2684	-0.0341	NEUTRAL	NA	392	Too-Many
TCGA.AG.3909.01A	7	99809010	99971679	15	0.0567	NEUTRAL	NA	6	"GATS,PILRA,PILRB,PVRIG,SPDYE3,STAG3"
TCGA.CK.5914.01A	7	99809010	99971679	15	0.1317	NEUTRAL	NA	6	"GATS,PILRA,PILRB,PVRIG,SPDYE3,STAG3"
TCGA.CI.6621	7	99815246	100471120	32	-0.0722	NEUTRAL	NA	28	"ACTL6B,AGFG2,C7orf61,EPHB4,EPO,FBXO24,GATS,GIGYF1,GNB2,LRCH4,MEPCE,MOSPD3,NYAP1,PCOLCE,PILRA,PILRB,POP7,PPP1R35,PVRIG,SAP25,SLC12A9,SPDYE3,TFR2,TRIP6,TSC22D4,ZAN,ZASP,ZCWPW1"
TCGA.AG.A01W.01A	7	99844951	100111768	84	-0.1003	NEUTRAL	NA	10	"C7orf61,GATS,MEPCE,NYAP1,PILRA,PILRB,PPP1R35,SPDYE3,TSC22D4,ZCWPW1"
TCGA.AG.4009.01A	7	99869434	99964885	6	0.2889	NEUTRAL	NA	3	"GATS,PILRB,SPDYE3"
TCGA.AG.4009.01A	7	99971214	100161797	46	0.0694	NEUTRAL	NA	8	"AGFG2,C7orf61,MEPCE,NYAP1,PILRA,PPP1R35,TSC22D4,ZCWPW1"
TCGA.AG.A036.01A	7	99984332	121560761	1288	0.2002	NEUTRAL	NA	130	Too-Many
TCGA.AG.A01L.01A	7	100006999	100488531	177	0.0228	NEUTRAL	NA	26	"ACHE,ACTL6B,AGFG2,C7orf61,EPHB4,EPO,FBXO24,GIGYF1,GNB2,LRCH4,MEPCE,MOSPD3,NYAP1,PCOLCE,POP7,PPP1R35,SAP25,SLC12A9,SRRT,TFR2,TRIP6,TSC22D4,UFSP1,ZAN,ZASP,ZCWPW1"
TCGA.DM.A28H	7	100017453	126642602	6568	0.0227	NEUTRAL	NA	148	Too-Many
TCGA.G4.6299	7	100017453	159119219	16390	-0.0196	NEUTRAL	NA	386	Too-Many
TCGA.AG.3909.01A	7	100028262	100187216	36	-0.0166	NEUTRAL	NA	10	"AGFG2,C7orf61,FBXO24,LRCH4,MEPCE,NYAP1,PPP1R35,SAP25,TSC22D4,ZASP"
TCGA.CK.5914.01A	7	100028262	100349298	108	-0.1894	NEUTRAL	NA	19	"ACTL6B,AGFG2,C7orf61,EPO,FBXO24,GIGYF1,GNB2,LRCH4,MEPCE,MOSPD3,NYAP1,PCOLCE,POP7,PPP1R35,SAP25,TFR2,TSC22D4,ZAN,ZASP"
TCGA.AA.A010.01A	7	100064534	100136938	12	-0.0023	NEUTRAL	NA	3	"AGFG2,NYAP1,TSC22D4"
TCGA.AA.A02K.01A	7	100074850	100212444	49	0.1947	NEUTRAL	NA	9	"AGFG2,FBXO24,LRCH4,MOSPD3,NYAP1,PCOLCE,SAP25,TSC22D4,ZASP"
TCGA.AG.A01W.01A	7	100117217	100195231	30	-0.0752	NEUTRAL	NA	5	"AGFG2,FBXO24,LRCH4,SAP25,ZASP"
TCGA.AZ.4308	7	100156437	159119219	16382	0.0211	NEUTRAL	NA	380	Too-Many
TCGA.AG.4009.01A	7	100162483	100179663	9	-0.3952	NEUTRAL	NA	4	"AGFG2,LRCH4,SAP25,ZASP"
TCGA.AF.3914.01A	7	100179348	100244566	36	0.0518	NEUTRAL	NA	6	"ACTL6B,FBXO24,LRCH4,MOSPD3,PCOLCE,TFR2"
TCGA.AG.3906.01A	7	100197612	100253373	30	0.0735	NEUTRAL	NA	5	"ACTL6B,FBXO24,MOSPD3,PCOLCE,TFR2"
TCGA.AA.A010.01A	7	100197612	100253878	33	-0.2024	NEUTRAL	NA	5	"ACTL6B,FBXO24,MOSPD3,PCOLCE,TFR2"
TCGA.AG.3909.01A	7	100239020	100334069	30	0.2162	NEUTRAL	NA	7	"ACTL6B,EPO,GIGYF1,GNB2,POP7,TFR2,ZAN"
TCGA.AG.A01W.01A	7	100254037	100451062	70	-0.0516	NEUTRAL	NA	8	"ACTL6B,EPHB4,EPO,GIGYF1,GNB2,POP7,SLC12A9,ZAN"
TCGA.AA.A02K.01A	7	100273832	100284549	12	-0.2139	NEUTRAL	NA	2	"GIGYF1,GNB2"
TCGA.AG.3906.01A	7	100304416	100365413	21	0.2075	NEUTRAL	NA	3	"EPO,POP7,ZAN"
TCGA.AY.A54L.01A	7	100331722	100336051	6	-0.4408	NEUTRAL	NA	1	ZAN
TCGA.AG.A00C.01A	7	100344120	100391422	31	0.0918	NEUTRAL	NA	1	ZAN
TCGA.AG.3891.01A	7	100348217	100371292	18	0.1703	NEUTRAL	NA	1	ZAN
TCGA.CK.5914.01A	7	100352802	100463719	56	0.1305	NEUTRAL	NA	3	"EPHB4,SLC12A9,ZAN"
TCGA.AA.A010.01A	7	100355807	100367454	12	-0.2318	NEUTRAL	NA	1	ZAN
TCGA.AA.A00N.01A	7	100355807	100419886	42	0.2853	NEUTRAL	NA	2	"EPHB4,ZAN"
TCGA.AF.3914.01A	7	100357313	121773529	1086	-0.0343	NEUTRAL	NA	111	Too-Many
TCGA.AA.A029.01A	7	100357977	102210255	179	-0.1783	NEUTRAL	NA	36	"ACHE,ALKBH4,AP1S1,CLDN15,COL26A1,CUX1,EPHB4,FIS1,IFT22,LOC100289561,LRWD1,MOGAT3,MUC12,MUC17,MUC3A,MYL10,NAT16,ORAI2,PLOD3,POLR2J,POLR2J3,PRKRIP1,RASA4B,SERPINE1,SH2B2,SLC12A9,SPDYE2,SPDYE2B,SPDYE6,SRRT,TRIM56,TRIP6,UFSP1,VGF,ZAN,ZNHIT1"
TCGA.AA.A010.01A	7	100369430	100401036	18	0.2388	NEUTRAL	NA	2	"EPHB4,ZAN"
TCGA.AA.A017.01A	7	100374025	100485636	53	0.0241	NEUTRAL	NA	5	"EPHB4,SLC12A9,SRRT,TRIP6,ZAN"
TCGA.AA.A01Q.01A	7	100404035	100479654	34	-0.4192	NEUTRAL	NA	4	"EPHB4,SLC12A9,SRRT,TRIP6"
TCGA.AG.4009.01A	7	100405007	100451770	11	0.2514	NEUTRAL	NA	2	"EPHB4,SLC12A9"
TCGA.AA.A02K.01A	7	100411226	117024754	968	0.2627	NEUTRAL	NA	98	"ACHE,ALKBH4,AP1S1,ARMC10,ASZ1,ATXN7L1,BCAP29,C7orf60,C7orf66,CAPZA2,CAV1,CAV2,CBLL1,CCDC71L,CDHR3,CLDN15,COG5,COL26A1,CUX1,DLD,DNAJB9,DNAJC2,DOCK4,DUS4L,EPHB4,FAM185A,FBXL13,FIS1,FOXP2,GPR22,GPR85,HBP1,IFRD1,IFT22,IMMP2L,KMT2E,LAMB1,LAMB4,LHFPL3,LOC100289561,LRRC17,LRRN3,LRWD1,LSMEM1,MDFIC,MET,MOGAT3,MUC12,MUC17,MUC3A,MYL10,NAMPT,NAPEPLD,NAT16,NRCAM,ORAI2,ORC5,PIK3CG,PLOD3,PMPCB,PNPLA8,POLR2J,POLR2J2,POLR2J3,PPP1R3A,PRKAR2B,PRKRIP1,PSMC2,PUS7,RASA4,RASA4B,RELN,RINT1,SERPINE1,SH2B2,SLC12A9,SLC26A3,SLC26A4,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,SRPK2,SRRT,ST7,SYPL1,TES,TFEC,THAP5,TMEM168,TRIM56,TRIP6,UFSP1,UPK3BL,VGF,WNT2,ZNF277,ZNHIT1"
TCGA.AA.A00J.01A	7	100414797	142572626	1872	0.0142	NEUTRAL	NA	247	Too-Many
TCGA.AA.A00N.01A	7	100421296	100469118	18	-0.4809	NEUTRAL	NA	3	"EPHB4,SLC12A9,TRIP6"
TCGA.AA.A00Q.01A	7	100451770	100458712	7	-0.44	NEUTRAL	NA	1	SLC12A9
TCGA.AG.3906.01A	7	100451770	100479654	20	0.1997	NEUTRAL	NA	3	"SLC12A9,SRRT,TRIP6"
TCGA.AG.3891.01A	7	100451770	100482804	25	0.2286	NEUTRAL	NA	3	"SLC12A9,SRRT,TRIP6"
TCGA.AA.A00Q.01A	7	100460265	100470762	9	-0.0765	NEUTRAL	NA	2	"SLC12A9,TRIP6"
TCGA.CK.5914.01A	7	100465070	100490739	26	-0.4259	NEUTRAL	NA	4	"ACHE,SRRT,TRIP6,UFSP1"
TCGA.AG.A01W.01A	7	100471335	100877651	68	0.0504	NEUTRAL	NA	15	"ACHE,AP1S1,CLDN15,MOGAT3,MUC12,MUC17,MUC3A,NAT16,PLOD3,SERPINE1,SRRT,TRIM56,UFSP1,VGF,ZNHIT1"
TCGA.AA.A02F.01A	7	100479654	103053397	197	-0.1712	NEUTRAL	NA	44	"ACHE,ALKBH4,AP1S1,ARMC10,CLDN15,COL26A1,CUX1,DNAJC2,FAM185A,FBXL13,FIS1,IFT22,LOC100289561,LRRC17,LRWD1,MOGAT3,MUC12,MUC17,MUC3A,MYL10,NAPEPLD,NAT16,ORAI2,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,PRKRIP1,PSMC2,RASA4,RASA4B,SERPINE1,SH2B2,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,SRRT,TRIM56,UFSP1,UPK3BL,VGF,ZNHIT1"
TCGA.AG.4009.01A	7	100481650	100490739	15	-0.2394	NEUTRAL	NA	3	"ACHE,SRRT,UFSP1"
TCGA.AA.A00D.01A	7	100485636	103018004	180	0.2436	NEUTRAL	NA	44	"ACHE,ALKBH4,AP1S1,ARMC10,CLDN15,COL26A1,CUX1,DNAJC2,FAM185A,FBXL13,FIS1,IFT22,LOC100289561,LRRC17,LRWD1,MOGAT3,MUC12,MUC17,MUC3A,MYL10,NAPEPLD,NAT16,ORAI2,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,PRKRIP1,PSMC2,RASA4,RASA4B,SERPINE1,SH2B2,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,SRRT,TRIM56,UFSP1,UPK3BL,VGF,ZNHIT1"
TCGA.AA.A00N.01A	7	100486445	100490739	5	-0.3221	NEUTRAL	NA	2	"ACHE,UFSP1"
TCGA.AG.3909.01A	7	100486445	100490739	5	0.1669	NEUTRAL	NA	2	"ACHE,UFSP1"
TCGA.AG.A00C.01A	7	100486445	100696225	23	-0.1407	NEUTRAL	NA	5	"ACHE,MUC12,MUC17,MUC3A,UFSP1"
TCGA.AA.A004.01A	7	100486445	150934481	2537	0.2159	NEUTRAL	NA	331	Too-Many
TCGA.AG.3891.01A	7	100487783	100490739	4	0.2453	NEUTRAL	NA	1	ACHE
TCGA.AG.3891.01A	7	100663356	100685890	12	-0.0923	NEUTRAL	NA	1	MUC17
TCGA.AG.3906.01A	7	100663356	100685890	12	-0.3092	NEUTRAL	NA	1	MUC17
TCGA.AA.A01Q.01A	7	100663356	100803775	31	-0.094	NEUTRAL	NA	4	"AP1S1,MUC17,SERPINE1,TRIM56"
TCGA.AA.A02E.01A	7	100684602	100692543	6	0.3242	NEUTRAL	NA	1	MUC17
TCGA.AA.A017.01A	7	100684602	103032017	187	0.0912	NEUTRAL	NA	39	"ALKBH4,AP1S1,ARMC10,CLDN15,COL26A1,CUX1,DNAJC2,FAM185A,FBXL13,FIS1,IFT22,LOC100289561,LRRC17,LRWD1,MOGAT3,MUC17,MYL10,NAPEPLD,NAT16,ORAI2,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,PRKRIP1,PSMC2,RASA4,RASA4B,SERPINE1,SH2B2,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,TRIM56,UPK3BL,VGF,ZNHIT1"
TCGA.AG.A01L.01A	7	100684602	128490805	1245	0.1801	NEUTRAL	NA	139	Too-Many
TCGA.AG.3891.01A	7	100691228	102235687	128	0.3399	NEUTRAL	NA	28	"ALKBH4,AP1S1,CLDN15,COL26A1,CUX1,FIS1,IFT22,LOC100289561,LRWD1,MOGAT3,MUC17,MYL10,NAT16,ORAI2,PLOD3,POLR2J,POLR2J3,PRKRIP1,RASA4,RASA4B,SERPINE1,SH2B2,SPDYE2,SPDYE2B,SPDYE6,TRIM56,VGF,ZNHIT1"
TCGA.AA.A010.01A	7	100701203	100797717	10	-0.4929	NEUTRAL	NA	4	"AP1S1,MUC17,SERPINE1,TRIM56"
TCGA.AA.A02E.01A	7	100730542	102113102	94	-0.3319	NEUTRAL	NA	21	"ALKBH4,AP1S1,CLDN15,COL26A1,CUX1,FIS1,IFT22,LOC100289561,LRWD1,MOGAT3,MYL10,NAT16,ORAI2,PLOD3,PRKRIP1,SERPINE1,SH2B2,SPDYE6,TRIM56,VGF,ZNHIT1"
TCGA.CI.6621	7	100739681	104636899	985	0.0473	NEUTRAL	NA	40	"ALKBH4,AP1S1,ARMC10,CLDN15,COL26A1,CUX1,DNAJC2,FAM185A,FBXL13,FIS1,IFT22,LHFPL3,LOC100289561,LRRC17,LRWD1,MOGAT3,MYL10,NAPEPLD,NAT16,ORAI2,ORC5,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,PRKRIP1,PSMC2,RASA4,RASA4B,RELN,SERPINE1,SH2B2,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,UPK3BL,VGF,ZNHIT1"
TCGA.CK.5914.01A	7	100773703	100962174	48	-0.2527	NEUTRAL	NA	10	"AP1S1,CLDN15,FIS1,IFT22,MOGAT3,NAT16,PLOD3,SERPINE1,VGF,ZNHIT1"
TCGA.AG.4009.01A	7	100799823	100839188	9	-0.1425	NEUTRAL	NA	4	"AP1S1,MOGAT3,NAT16,VGF"
TCGA.AA.A010.01A	7	100806268	100843980	9	-0.3568	NEUTRAL	NA	3	"MOGAT3,NAT16,VGF"
TCGA.AA.A00Q.01A	7	100806268	101460833	39	-1.00E-04	NEUTRAL	NA	11	"CLDN15,COL26A1,CUX1,FIS1,IFT22,MOGAT3,MYL10,NAT16,PLOD3,VGF,ZNHIT1"
TCGA.AG.3906.01A	7	100839188	100861386	17	0.1603	NEUTRAL	NA	3	"MOGAT3,PLOD3,ZNHIT1"
TCGA.AG.3906.01A	7	100887241	101870605	37	0.1118	NEUTRAL	NA	5	"COL26A1,CUX1,FIS1,IFT22,MYL10"
TCGA.AY.A69D	7	100895479	109223213	2417	0.03	NEUTRAL	NA	58	"ALKBH4,ARMC10,ATXN7L1,BCAP29,C7orf66,CBLL1,CCDC71L,CDHR3,COG5,COL26A1,CUX1,DLD,DNAJB9,DNAJC2,DUS4L,FAM185A,FBXL13,GPR22,HBP1,IFT22,KMT2E,LAMB1,LAMB4,LHFPL3,LOC100289561,LRRC17,LRWD1,MYL10,NAMPT,NAPEPLD,NRCAM,ORAI2,ORC5,PIK3CG,PMPCB,PNPLA8,POLR2J,POLR2J2,POLR2J3,PRKAR2B,PRKRIP1,PSMC2,PUS7,RASA4,RASA4B,RELN,RINT1,SH2B2,SLC26A3,SLC26A4,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,SRPK2,SYPL1,THAP5,UPK3BL"
TCGA.AG.A01W.01A	7	100963027	101054141	15	-0.3951	NEUTRAL	NA	2	"COL26A1,IFT22"
TCGA.AG.A00C.01A	7	101063210	101200600	8	-0.3059	NEUTRAL	NA	1	COL26A1
TCGA.AF.2692	7	101111876	102091734	200	-0.354	NEUTRAL	NA	8	"COL26A1,CUX1,LOC100289561,MYL10,ORAI2,PRKRIP1,SH2B2,SPDYE6"
TCGA.AA.3866	7	101178282	103467266	430	0.1065	NEUTRAL	NA	28	"ALKBH4,ARMC10,COL26A1,CUX1,DNAJC2,FAM185A,FBXL13,LOC100289561,LRRC17,LRWD1,MYL10,NAPEPLD,ORAI2,PMPCB,POLR2J,POLR2J2,POLR2J3,PRKRIP1,PSMC2,RASA4,RASA4B,RELN,SH2B2,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,UPK3BL"
TCGA.AG.A00C.01A	7	101256708	102210255	60	0.1805	NEUTRAL	NA	14	"ALKBH4,CUX1,LOC100289561,LRWD1,MYL10,ORAI2,POLR2J,POLR2J3,PRKRIP1,RASA4B,SH2B2,SPDYE2,SPDYE2B,SPDYE6"
TCGA.CK.5914.01A	7	101256708	102398260	90	-0.1432	NEUTRAL	NA	18	"ALKBH4,CUX1,FAM185A,LOC100289561,LRWD1,MYL10,ORAI2,POLR2J,POLR2J2,POLR2J3,PRKRIP1,RASA4,RASA4B,SH2B2,SPDYE2,SPDYE2B,SPDYE6,UPK3BL"
TCGA.AA.A00N.01A	7	101256708	102412775	92	-0.3191	NEUTRAL	NA	18	"ALKBH4,CUX1,FAM185A,LOC100289561,LRWD1,MYL10,ORAI2,POLR2J,POLR2J2,POLR2J3,PRKRIP1,RASA4,RASA4B,SH2B2,SPDYE2,SPDYE2B,SPDYE6,UPK3BL"
TCGA.CM.6168	7	101381612	159119219	16201	0.2487	NEUTRAL	NA	344	Too-Many
TCGA.AA.A00Q.01A	7	101559343	128097276	981	0.345	NEUTRAL	NA	118	Too-Many
TCGA.A6.2672	7	101604645	138121328	9827	0.0535	NEUTRAL	NA	180	Too-Many
TCGA.AG.4009.01A	7	101870605	101960760	14	-0.1708	NEUTRAL	NA	2	"CUX1,SH2B2"
TCGA.A6.5665	7	101873295	138118014	9780	0.0643	NEUTRAL	NA	180	Too-Many
TCGA.A6.5661	7	101873295	147504908	12317	0.0329	NEUTRAL	NA	264	Too-Many
TCGA.AA.A010.01A	7	101988727	102715673	73	0.0312	NEUTRAL	NA	18	"ALKBH4,ARMC10,FAM185A,FBXL13,LOC100289561,LRRC17,LRWD1,ORAI2,POLR2J,POLR2J2,POLR2J3,PRKRIP1,RASA4,RASA4B,SPDYE2,SPDYE2B,SPDYE6,UPK3BL"
TCGA.AG.4009.01A	7	102065411	102119185	15	-0.0763	NEUTRAL	NA	5	"ALKBH4,LRWD1,ORAI2,POLR2J,PRKRIP1"
TCGA.AG.3909.01A	7	102079362	102235687	17	-0.2223	NEUTRAL	NA	9	"ALKBH4,LRWD1,ORAI2,POLR2J,POLR2J3,RASA4,RASA4B,SPDYE2,SPDYE2B"
TCGA.AG.3906.01A	7	102100000	103132335	103	-0.0579	NEUTRAL	NA	20	"ALKBH4,ARMC10,DNAJC2,FAM185A,FBXL13,LRRC17,LRWD1,NAPEPLD,PMPCB,POLR2J,POLR2J2,POLR2J3,PSMC2,RASA4,RASA4B,RELN,SLC26A5,SPDYE2,SPDYE2B,UPK3BL"
TCGA.AA.3850	7	102102163	104409390	659	-0.17085	NEUTRAL	NA	22	"ALKBH4,ARMC10,DNAJC2,FAM185A,FBXL13,LHFPL3,LRRC17,LRWD1,NAPEPLD,ORC5,PMPCB,POLR2J,POLR2J2,POLR2J3,PSMC2,RASA4,RASA4B,RELN,SLC26A5,SPDYE2,SPDYE2B,UPK3BL"
TCGA.AF.2692	7	102102163	159119219	16081	0.0411	NEUTRAL	NA	338	Too-Many
TCGA.AG.A00Y.01A	7	102114012	107698245	425	0.1474	NEUTRAL	NA	42	"ARMC10,ATXN7L1,BCAP29,CBLL1,CCDC71L,CDHR3,COG5,DLD,DNAJC2,DUS4L,FAM185A,FBXL13,GPR22,HBP1,KMT2E,LAMB1,LAMB4,LHFPL3,LRRC17,NAMPT,NAPEPLD,ORC5,PIK3CG,PMPCB,POLR2J,POLR2J2,POLR2J3,PRKAR2B,PSMC2,PUS7,RASA4,RASA4B,RELN,RINT1,SLC26A3,SLC26A4,SLC26A5,SPDYE2,SPDYE2B,SRPK2,SYPL1,UPK3BL"
TCGA.AA.A02E.01A	7	102246267	102944816	37	-0.0134	NEUTRAL	NA	12	"ARMC10,FAM185A,FBXL13,LRRC17,NAPEPLD,PMPCB,POLR2J2,RASA4,RASA4B,SPDYE2,SPDYE2B,UPK3BL"
TCGA.AA.3509.01A	7	102389623	104782455	196	0.143	NEUTRAL	NA	14	"ARMC10,DNAJC2,FAM185A,FBXL13,KMT2E,LHFPL3,LRRC17,NAPEPLD,ORC5,PMPCB,PSMC2,RELN,SLC26A5,SRPK2"
TCGA.F4.6461	7	102402609	103049396	85	-0.3454	NEUTRAL	NA	9	"ARMC10,DNAJC2,FAM185A,FBXL13,LRRC17,NAPEPLD,PMPCB,PSMC2,SLC26A5"
TCGA.AA.3680	7	102402609	128857171	6865	-0.0161	NEUTRAL	NA	116	Too-Many
TCGA.A6.3808.01A	7	102412775	105917417	278	0.1104	NEUTRAL	NA	20	"ARMC10,ATXN7L1,CDHR3,DNAJC2,FAM185A,FBXL13,KMT2E,LHFPL3,LRRC17,NAMPT,NAPEPLD,ORC5,PMPCB,PSMC2,PUS7,RELN,RINT1,SLC26A5,SRPK2,SYPL1"
TCGA.AG.3891.01A	7	102453739	102956173	45	-0.0069	NEUTRAL	NA	6	"ARMC10,DNAJC2,FBXL13,LRRC17,NAPEPLD,PMPCB"
TCGA.AG.A00C.01A	7	102453739	103828667	154	-0.1022	NEUTRAL	NA	10	"ARMC10,DNAJC2,FBXL13,LRRC17,NAPEPLD,ORC5,PMPCB,PSMC2,RELN,SLC26A5"
TCGA.AA.A01Q.01A	7	102453739	127637699	887	0.1004	NEUTRAL	NA	95	"AASS,ANKRD7,ARF5,ARMC10,ASB15,ASZ1,ATXN7L1,BCAP29,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CCDC71L,CDHR3,CFTR,COG5,CPED1,CTTNBP2,DLD,DNAJB9,DNAJC2,DOCK4,DUS4L,FAM3C,FBXL13,FEZF1,FOXP2,FSCN3,GCC1,GPR22,GPR37,GPR85,GRM8,HBP1,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,KMT2E,LAMB1,LAMB4,LHFPL3,LMOD2,LRRC17,LRRN3,LSM8,LSMEM1,MDFIC,MET,NAMPT,NAPEPLD,NDUFA5,NRCAM,ORC5,PAX4,PIK3CG,PMPCB,PNPLA8,POT1,PPP1R3A,PRKAR2B,PSMC2,PTPRZ1,PUS7,RELN,RINT1,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SLC26A5,SND1,SPAM1,SRPK2,ST7,SYPL1,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AA.A029.01A	7	102453739	150707633	2400	0.3172	NEUTRAL	NA	283	Too-Many
TCGA.AG.A025.01A	7	102584615	134132685	1460	0.0128	NEUTRAL	NA	141	Too-Many
TCGA.AG.3909.01A	7	102665458	102727055	7	-0.2104	NEUTRAL	NA	2	"ARMC10,FBXL13"
TCGA.CK.5914.01A	7	102665458	103038319	62	-0.0394	NEUTRAL	NA	7	"ARMC10,DNAJC2,FBXL13,NAPEPLD,PMPCB,PSMC2,SLC26A5"
TCGA.AG.4009.01A	7	102716195	102738699	6	-0.1697	NEUTRAL	NA	1	ARMC10
TCGA.AG.4009.01A	7	102743834	105135537	183	0.3562	NEUTRAL	NA	11	"DNAJC2,KMT2E,LHFPL3,NAPEPLD,ORC5,PMPCB,PSMC2,PUS7,RELN,SLC26A5,SRPK2"
TCGA.CM.5348	7	102760510	156396539	15267	0.2634	NEUTRAL	NA	313	Too-Many
TCGA.AA.3530	7	102764999	159119219	15992	5.00E-04	NEUTRAL	NA	324	Too-Many
TCGA.AA.A00O.01A	7	102768878	156745116	2676	0.0099	NEUTRAL	NA	316	Too-Many
TCGA.AG.3909.01A	7	102950735	102995259	21	-0.0151	NEUTRAL	NA	4	"DNAJC2,PMPCB,PSMC2,SLC26A5"
TCGA.AA.A02E.01A	7	102952056	143029780	2080	0.1971	NEUTRAL	NA	216	Too-Many
TCGA.AA.3862.01A	7	102952957	128432392	1109	0.0826	NEUTRAL	NA	103	Too-Many
TCGA.AG.3891.01A	7	102957246	102968066	8	0.2768	NEUTRAL	NA	1	DNAJC2
TCGA.AG.3891.01A	7	102978129	105029026	146	-0.1811	NEUTRAL	NA	8	"DNAJC2,KMT2E,LHFPL3,ORC5,PSMC2,RELN,SLC26A5,SRPK2"
TCGA.AG.A01J.01A	7	103004581	107315363	267	0.2747	NEUTRAL	NA	22	"ATXN7L1,BCAP29,CCDC71L,CDHR3,COG5,DUS4L,GPR22,HBP1,KMT2E,LHFPL3,NAMPT,ORC5,PIK3CG,PRKAR2B,PSMC2,PUS7,RELN,RINT1,SLC26A4,SLC26A5,SRPK2,SYPL1"
TCGA.AG.A023.01A	7	103004581	127637699	943	0.105	NEUTRAL	NA	89	"AASS,ANKRD7,ARF5,ASB15,ASZ1,ATXN7L1,BCAP29,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CCDC71L,CDHR3,CFTR,COG5,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,DUS4L,FAM3C,FEZF1,FOXP2,FSCN3,GCC1,GPR22,GPR37,GPR85,GRM8,HBP1,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,KMT2E,LAMB1,LAMB4,LHFPL3,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NAMPT,NDUFA5,NRCAM,ORC5,PAX4,PIK3CG,PNPLA8,POT1,PPP1R3A,PRKAR2B,PSMC2,PTPRZ1,PUS7,RELN,RINT1,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SLC26A5,SND1,SPAM1,SRPK2,ST7,SYPL1,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AA.A00D.01A	7	103018841	103805605	80	-0.075	NEUTRAL	NA	3	"ORC5,RELN,SLC26A5"
TCGA.AA.A017.01A	7	103033314	158935086	2759	0.3186	NEUTRAL	NA	320	Too-Many
TCGA.AA.A010.01A	7	103038319	103151251	20	-0.2502	NEUTRAL	NA	2	"RELN,SLC26A5"
TCGA.AA.A01K.01A	7	103048269	134891817	1417	0.2567	NEUTRAL	NA	142	Too-Many
TCGA.F4.6461	7	103049476	159119219	15954	0.0198	NEUTRAL	NA	320	Too-Many
TCGA.AA.3811	7	103071192	103369915	107	-0.0187	NEUTRAL	NA	2	"RELN,SLC26A5"
TCGA.AG.3906.01A	7	103136161	103180637	13	-0.4329	NEUTRAL	NA	1	RELN
TCGA.CK.5914.01A	7	103159743	103175721	4	-0.2453	NEUTRAL	NA	1	RELN
TCGA.AG.3906.01A	7	103183131	105099564	95	-0.1183	NEUTRAL	NA	6	"KMT2E,LHFPL3,ORC5,PUS7,RELN,SRPK2"
TCGA.AA.3982	7	103201262	103463997	111	0.0006	NEUTRAL	NA	1	RELN
TCGA.AA.A010.01A	7	103230002	103629551	28	-0.4934	NEUTRAL	NA	1	RELN
TCGA.AA.3967.01A	7	103234102	103828667	35	0.0443	NEUTRAL	NA	2	"ORC5,RELN"
TCGA.AA.3941	7	103289856	103379483	39	-0.4475	NEUTRAL	NA	1	RELN
TCGA.AA.3844	7	103296608	103379483	35	-0.1102	NEUTRAL	NA	1	RELN
TCGA.AA.3941	7	103379896	103451090	38	0.3681	NEUTRAL	NA	1	RELN
TCGA.AA.3811	7	103379896	103463997	42	-0.127	NEUTRAL	NA	1	RELN
TCGA.AA.3844	7	103379896	103463997	42	0.3225	NEUTRAL	NA	1	RELN
TCGA.AA.3867	7	103459934	103472986	13	-0.4288	NEUTRAL	NA	1	RELN
TCGA.AA.3842	7	103466057	103472986	9	-0.3244	NEUTRAL	NA	1	RELN
TCGA.AA.3941	7	103479068	103531782	29	0.363	NEUTRAL	NA	1	RELN
TCGA.AA.3864	7	103479068	104416069	400	-0.0424	NEUTRAL	NA	3	"LHFPL3,ORC5,RELN"
TCGA.AA.3811	7	103479068	104431187	406	-0.035	NEUTRAL	NA	3	"LHFPL3,ORC5,RELN"
TCGA.AA.3982	7	103479068	105986114	890	0.363	NEUTRAL	NA	11	"ATXN7L1,CDHR3,KMT2E,LHFPL3,NAMPT,ORC5,PUS7,RELN,RINT1,SRPK2,SYPL1"
TCGA.AA.3867	7	103479068	125156052	5539	0.0751	NEUTRAL	NA	80	"AASS,ANKRD7,ASB15,ASZ1,ATXN7L1,BCAP29,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CCDC71L,CDHR3,CFTR,COG5,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,DUS4L,FAM3C,FEZF1,FOXP2,GPR22,GPR37,GPR85,HBP1,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,KMT2E,LAMB1,LAMB4,LHFPL3,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NAMPT,NDUFA5,NRCAM,ORC5,PIK3CG,PNPLA8,POT1,PPP1R3A,PRKAR2B,PTPRZ1,PUS7,RELN,RINT1,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SPAM1,SRPK2,ST7,SYPL1,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277"
TCGA.AA.3972	7	103479068	159119219	15807	0.0691	NEUTRAL	NA	319	Too-Many
TCGA.AA.3866	7	103481687	127711685	6339	0.0487	NEUTRAL	NA	88	"AASS,ANKRD7,ARF5,ASB15,ASZ1,ATXN7L1,BCAP29,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CCDC71L,CDHR3,CFTR,COG5,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,DUS4L,FAM3C,FEZF1,FOXP2,FSCN3,GCC1,GPR22,GPR37,GPR85,GRM8,HBP1,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,KMT2E,LAMB1,LAMB4,LHFPL3,LMOD2,LRRC4,LRRN3,LSM8,LSMEM1,MDFIC,MET,NAMPT,NDUFA5,NRCAM,ORC5,PAX4,PIK3CG,PNPLA8,POT1,PPP1R3A,PRKAR2B,PTPRZ1,PUS7,RELN,RINT1,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SND1,SPAM1,SRPK2,ST7,SYPL1,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AA.3844	7	103484375	104265349	327	0.2889	NEUTRAL	NA	3	"LHFPL3,ORC5,RELN"
TCGA.AA.3872	7	103484375	104265349	327	0.3696	NEUTRAL	NA	3	"LHFPL3,ORC5,RELN"
TCGA.AA.3977	7	103484375	104267188	329	0.0475	NEUTRAL	NA	3	"LHFPL3,ORC5,RELN"
TCGA.AA.3989	7	103484375	149642018	12711	0.0115	NEUTRAL	NA	256	Too-Many
TCGA.AA.3949	7	103484375	159119219	15799	-0.0089	NEUTRAL	NA	319	Too-Many
TCGA.AG.3591	7	103511404	109061414	1835	-0.1995	NEUTRAL	NA	30	"ATXN7L1,BCAP29,C7orf66,CBLL1,CCDC71L,CDHR3,COG5,DLD,DNAJB9,DUS4L,GPR22,HBP1,KMT2E,LAMB1,LAMB4,LHFPL3,NAMPT,NRCAM,ORC5,PIK3CG,PNPLA8,PRKAR2B,PUS7,RELN,RINT1,SLC26A3,SLC26A4,SRPK2,SYPL1,THAP5"
TCGA.AA.3941	7	103544060	104435896	369	0.3209	NEUTRAL	NA	3	"LHFPL3,ORC5,RELN"
TCGA.AA.A01C.01A	7	103629551	107389278	200	0.1773	NEUTRAL	NA	21	"ATXN7L1,BCAP29,CBLL1,CCDC71L,CDHR3,COG5,DUS4L,GPR22,HBP1,KMT2E,LHFPL3,NAMPT,ORC5,PIK3CG,PRKAR2B,PUS7,RELN,RINT1,SLC26A4,SRPK2,SYPL1"
TCGA.AA.A010.01A	7	103767221	105672811	111	0.211	NEUTRAL	NA	8	"ATXN7L1,CDHR3,KMT2E,LHFPL3,ORC5,PUS7,RINT1,SRPK2"
TCGA.CK.5914.01A	7	103805605	103969256	11	0.1145	NEUTRAL	NA	2	"LHFPL3,ORC5"
TCGA.AA.A00D.01A	7	103807201	107557192	209	0.2439	NEUTRAL	NA	22	"ATXN7L1,BCAP29,CBLL1,CCDC71L,CDHR3,COG5,DLD,DUS4L,GPR22,HBP1,KMT2E,LHFPL3,NAMPT,ORC5,PIK3CG,PRKAR2B,PUS7,RINT1,SLC26A3,SLC26A4,SRPK2,SYPL1"
TCGA.AG.3909.01A	7	103835544	103969256	6	-0.1824	NEUTRAL	NA	2	"LHFPL3,ORC5"
TCGA.AG.A00C.01A	7	103848216	107204210	155	0.0173	NEUTRAL	NA	16	"ATXN7L1,CCDC71L,CDHR3,COG5,GPR22,HBP1,KMT2E,LHFPL3,NAMPT,ORC5,PIK3CG,PRKAR2B,PUS7,RINT1,SRPK2,SYPL1"
TCGA.AA.3844	7	104266495	104271092	7	-0.4805	NEUTRAL	NA	1	LHFPL3
TCGA.AA.3872	7	104266495	104271092	7	-0.4613	NEUTRAL	NA	1	LHFPL3
TCGA.AA.3844	7	104276199	104431187	69	0.3737	NEUTRAL	NA	1	LHFPL3
TCGA.AA.3977	7	104276199	137812368	9074	-0.0244	NEUTRAL	NA	153	Too-Many
TCGA.AA.3850	7	104411272	105879060	468	0.34415	NEUTRAL	NA	8	"ATXN7L1,CDHR3,KMT2E,LHFPL3,PUS7,RINT1,SRPK2,SYPL1"
TCGA.AA.3864	7	104416183	104897224	92	0.1909	NEUTRAL	NA	3	"KMT2E,LHFPL3,SRPK2"
TCGA.AA.3811	7	104435896	105952737	470	0.2789	NEUTRAL	NA	9	"ATXN7L1,CDHR3,KMT2E,LHFPL3,NAMPT,PUS7,RINT1,SRPK2,SYPL1"
TCGA.AA.3509.01A	7	104783493	105752850	74	-0.3634	NEUTRAL	NA	6	"ATXN7L1,CDHR3,PUS7,RINT1,SRPK2,SYPL1"
TCGA.CI.6621	7	104877915	106193022	492	0.0425	NEUTRAL	NA	7	"ATXN7L1,CDHR3,NAMPT,PUS7,RINT1,SRPK2,SYPL1"
TCGA.AG.A01W.01A	7	104895971	105298605	41	0.0392	NEUTRAL	NA	4	"ATXN7L1,PUS7,RINT1,SRPK2"
TCGA.CK.5914.01A	7	104909205	105656335	52	-0.0403	NEUTRAL	NA	5	"ATXN7L1,CDHR3,PUS7,RINT1,SRPK2"
TCGA.AA.3864	7	104916039	149618386	12196	-0.0318	NEUTRAL	NA	252	Too-Many
TCGA.AG.3891.01A	7	105098190	105739557	54	0.1963	NEUTRAL	NA	5	"ATXN7L1,CDHR3,PUS7,RINT1,SYPL1"
TCGA.AA.A02H.01A	7	105098190	106522536	68	0.0562	NEUTRAL	NA	8	"ATXN7L1,CCDC71L,CDHR3,NAMPT,PIK3CG,PUS7,RINT1,SYPL1"
TCGA.AG.3906.01A	7	105103021	105739557	51	0.2394	NEUTRAL	NA	5	"ATXN7L1,CDHR3,PUS7,RINT1,SYPL1"
TCGA.AG.4009.01A	7	105142820	105603688	20	0.012	NEUTRAL	NA	4	"ATXN7L1,CDHR3,PUS7,RINT1"
TCGA.AG.3909.01A	7	105146354	105176961	4	0.2868	NEUTRAL	NA	2	"PUS7,RINT1"
TCGA.AA.A00N.01A	7	105173195	106822791	85	-0.4265	NEUTRAL	NA	9	"ATXN7L1,CCDC71L,CDHR3,HBP1,NAMPT,PIK3CG,PRKAR2B,RINT1,SYPL1"
TCGA.AA.A02F.01A	7	105188954	158935086	2522	0.1053	NEUTRAL	NA	313	Too-Many
TCGA.AG.3909.01A	7	105205687	105662644	21	0.1763	NEUTRAL	NA	3	"ATXN7L1,CDHR3,RINT1"
TCGA.AG.A01W.01A	7	105402510	105460057	18	-0.1323	NEUTRAL	NA	1	ATXN7L1
TCGA.AG.A01W.01A	7	105519441	107205820	121	0.3762	NEUTRAL	NA	10	"CCDC71L,CDHR3,COG5,DUS4L,GPR22,HBP1,NAMPT,PIK3CG,PRKAR2B,SYPL1"
TCGA.AA.3693	7	105586852	105587440	3	-0.4936	NEUTRAL	NA	0	None
TCGA.AA.3858	7	105588638	142267509	9935	0.0786	NEUTRAL	NA	188	Too-Many
TCGA.AA.3841	7	105600567	105601514	4	-0.4694	NEUTRAL	NA	0	None
TCGA.AA.3841	7	105606499	144219403	10332	0.3011	NEUTRAL	NA	230	Too-Many
TCGA.AG.4009.01A	7	105732204	105917417	14	-0.0327	NEUTRAL	NA	2	"NAMPT,SYPL1"
TCGA.AG.3909.01A	7	105732204	106836262	42	0.2625	NEUTRAL	NA	6	"CCDC71L,HBP1,NAMPT,PIK3CG,PRKAR2B,SYPL1"
TCGA.AA.3941	7	105798995	106187809	160	0.3042	NEUTRAL	NA	1	NAMPT
TCGA.AA.3850	7	105890297	108401494	809	0.00045	NEUTRAL	NA	19	"BCAP29,CBLL1,CCDC71L,COG5,DLD,DNAJB9,DUS4L,GPR22,HBP1,LAMB1,LAMB4,NAMPT,NRCAM,PIK3CG,PNPLA8,PRKAR2B,SLC26A3,SLC26A4,THAP5"
TCGA.AG.3906.01A	7	105891482	107315363	82	-0.0635	NEUTRAL	NA	10	"BCAP29,CCDC71L,COG5,DUS4L,GPR22,HBP1,NAMPT,PIK3CG,PRKAR2B,SLC26A4"
TCGA.AG.3891.01A	7	105891482	134891817	1296	-0.1287	NEUTRAL	NA	131	Too-Many
TCGA.CK.5914.01A	7	105901969	106524563	19	-0.1736	NEUTRAL	NA	3	"CCDC71L,NAMPT,PIK3CG"
TCGA.DM.A28M.01A	7	105908883	135080355	1399	0.2654	NEUTRAL	NA	133	Too-Many
TCGA.AA.3509.01A	7	105915354	112723646	319	0.2049	NEUTRAL	NA	29	"BCAP29,C7orf60,C7orf66,CBLL1,CCDC71L,COG5,DLD,DNAJB9,DOCK4,DUS4L,GPR22,GPR85,HBP1,IFRD1,IMMP2L,LAMB1,LAMB4,LRRN3,LSMEM1,NAMPT,NRCAM,PIK3CG,PNPLA8,PRKAR2B,SLC26A3,SLC26A4,THAP5,TMEM168,ZNF277"
TCGA.AA.3844	7	105936053	105995819	20	0.2947	NEUTRAL	NA	0	None
TCGA.AA.3811	7	105954988	106187809	95	-0.0968	NEUTRAL	NA	0	None
TCGA.AA.3844	7	106005836	106187809	76	0.3368	NEUTRAL	NA	0	None
TCGA.AA.3982	7	106005836	106187809	76	0.1054	NEUTRAL	NA	0	None
TCGA.D5.6534	7	106022469	106299791	119	-0.1814	NEUTRAL	NA	1	CCDC71L
TCGA.AY.A71X	7	106121044	118385969	3074	0.0394	NEUTRAL	NA	44	"ANKRD7,ASZ1,BCAP29,C7orf60,C7orf66,CAPZA2,CAV1,CAV2,CBLL1,CCDC71L,CFTR,COG5,CTTNBP2,DLD,DNAJB9,DOCK4,DUS4L,FOXP2,GPR22,GPR85,HBP1,IFRD1,IMMP2L,LAMB1,LAMB4,LRRN3,LSM8,LSMEM1,MDFIC,MET,NRCAM,PIK3CG,PNPLA8,PPP1R3A,PRKAR2B,SLC26A3,SLC26A4,ST7,TES,TFEC,THAP5,TMEM168,WNT2,ZNF277"
TCGA.AA.3982	7	106192960	107776437	455	0.289	NEUTRAL	NA	14	"BCAP29,CBLL1,CCDC71L,COG5,DLD,DUS4L,GPR22,HBP1,LAMB1,LAMB4,PIK3CG,PRKAR2B,SLC26A3,SLC26A4"
TCGA.AA.3811	7	106192960	108202924	636	0.0944	NEUTRAL	NA	17	"BCAP29,CBLL1,CCDC71L,COG5,DLD,DUS4L,GPR22,HBP1,LAMB1,LAMB4,NRCAM,PIK3CG,PNPLA8,PRKAR2B,SLC26A3,SLC26A4,THAP5"
TCGA.AA.3872	7	106192960	147144246	10912	0.3399	NEUTRAL	NA	228	Too-Many
TCGA.D5.6534	7	106309642	159119219	14744	0.2076	NEUTRAL	NA	307	Too-Many
TCGA.CI.6621	7	106378633	128730534	5515	0.0399	NEUTRAL	NA	93	"AASS,ANKRD7,ARF5,ASB15,ASZ1,ATP6V1F,BCAP29,C7orf60,C7orf66,C7orf77,CADPS2,CALU,CAPZA2,CAV1,CAV2,CBLL1,CCDC136,CFTR,COG5,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,DUS4L,FAM3C,FAM71F1,FAM71F2,FEZF1,FLNC,FOXP2,FSCN3,GCC1,GPR22,GPR37,GPR85,GRM8,HBP1,HILPDA,HYAL4,IFRD1,IMMP2L,IMPDH1,ING3,IQUB,IRF5,KCND2,KCP,LAMB1,LAMB4,LEP,LMOD2,LOC100130705,LRRC4,LRRN3,LSM8,LSMEM1,MDFIC,MET,METTL2B,NDUFA5,NRCAM,OPN1SW,PAX4,PIK3CG,PNPLA8,POT1,PPP1R3A,PRKAR2B,PRRT4,PTPRZ1,RBM28,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SND1,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TNPO3,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AG.4009.01A	7	106507975	107207466	51	0.2928	NEUTRAL	NA	6	"COG5,DUS4L,GPR22,HBP1,PIK3CG,PRKAR2B"
TCGA.AA.A010.01A	7	106507975	107849818	202	0.2165	NEUTRAL	NA	14	"BCAP29,CBLL1,COG5,DLD,DUS4L,GPR22,HBP1,LAMB1,LAMB4,NRCAM,PIK3CG,PRKAR2B,SLC26A3,SLC26A4"
TCGA.AA.3556	7	106529248	149026753	11456	0.0186	NEUTRAL	NA	237	Too-Many
TCGA.AG.3611.01A	7	106786735	106836262	12	-0.0373	NEUTRAL	NA	2	"HBP1,PRKAR2B"
TCGA.CK.5914.01A	7	106793590	106820301	4	-0.2887	NEUTRAL	NA	2	"HBP1,PRKAR2B"
TCGA.AA.3967.01A	7	106799877	107254040	45	-0.0927	NEUTRAL	NA	6	"BCAP29,COG5,DUS4L,GPR22,HBP1,PRKAR2B"
TCGA.AG.3611.01A	7	106840558	107350472	56	0.2729	NEUTRAL	NA	6	"BCAP29,COG5,DUS4L,GPR22,HBP1,SLC26A4"
TCGA.EI.6513	7	107188351	110745792	1095	0.0246	NEUTRAL	NA	16	"BCAP29,C7orf66,CBLL1,COG5,DLD,DNAJB9,DUS4L,IMMP2L,LAMB1,LAMB4,LRRN3,NRCAM,PNPLA8,SLC26A3,SLC26A4,THAP5"
TCGA.AA.A00N.01A	7	107234348	107302045	9	0.2408	NEUTRAL	NA	2	"BCAP29,SLC26A4"
TCGA.CK.5914.01A	7	107234348	107315363	13	0.0586	NEUTRAL	NA	2	"BCAP29,SLC26A4"
TCGA.AG.4009.01A	7	107234348	115897301	291	0.3587	NEUTRAL	NA	26	"BCAP29,C7orf60,C7orf66,CBLL1,DLD,DNAJB9,DOCK4,FOXP2,GPR85,IFRD1,IMMP2L,LAMB1,LAMB4,LRRN3,LSMEM1,MDFIC,NRCAM,PNPLA8,PPP1R3A,SLC26A3,SLC26A4,TES,TFEC,THAP5,TMEM168,ZNF277"
TCGA.AA.A00F.01A	7	107236265	114174617	206	0.3162	NEUTRAL	NA	23	"BCAP29,C7orf60,C7orf66,CBLL1,DLD,DNAJB9,DOCK4,FOXP2,GPR85,IFRD1,IMMP2L,LAMB1,LAMB4,LRRN3,LSMEM1,NRCAM,PNPLA8,PPP1R3A,SLC26A3,SLC26A4,THAP5,TMEM168,ZNF277"
TCGA.AG.A00C.01A	7	107240800	120455724	425	-0.0831	NEUTRAL	NA	39	"ANKRD7,ASZ1,BCAP29,C7orf60,C7orf66,CAPZA2,CAV1,CAV2,CBLL1,CFTR,CTTNBP2,DLD,DNAJB9,DOCK4,FOXP2,GPR85,IFRD1,IMMP2L,KCND2,LAMB1,LAMB4,LRRN3,LSM8,LSMEM1,MDFIC,MET,NRCAM,PNPLA8,PPP1R3A,SLC26A3,SLC26A4,ST7,TES,TFEC,THAP5,TMEM168,TSPAN12,WNT2,ZNF277"
TCGA.AA.3967.01A	7	107258735	111381101	173	0.3585	NEUTRAL	NA	15	"BCAP29,C7orf66,CBLL1,DLD,DNAJB9,DOCK4,IMMP2L,LAMB1,LAMB4,LRRN3,NRCAM,PNPLA8,SLC26A3,SLC26A4,THAP5"
TCGA.AG.3906.01A	7	107323625	107344702	10	0.2885	NEUTRAL	NA	1	SLC26A4
TCGA.AA.A00N.01A	7	107323625	107384528	14	0.1674	NEUTRAL	NA	2	"CBLL1,SLC26A4"
TCGA.AG.3906.01A	7	107350472	127343172	659	-0.0565	NEUTRAL	NA	68	"AASS,ANKRD7,ARF5,ASB15,ASZ1,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CFTR,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,FAM3C,FEZF1,FOXP2,FSCN3,GCC1,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LAMB1,LAMB4,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,NRCAM,PAX4,PNPLA8,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SND1,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AG.3611.01A	7	107352944	107406230	9	-0.0178	NEUTRAL	NA	3	"CBLL1,SLC26A3,SLC26A4"
TCGA.AG.3611.01A	7	107407980	117199480	270	0.2873	NEUTRAL	NA	31	"ASZ1,C7orf60,C7orf66,CAPZA2,CAV1,CAV2,CFTR,DLD,DNAJB9,DOCK4,FOXP2,GPR85,IFRD1,IMMP2L,LAMB1,LAMB4,LRRN3,LSMEM1,MDFIC,MET,NRCAM,PNPLA8,PPP1R3A,SLC26A3,ST7,TES,TFEC,THAP5,TMEM168,WNT2,ZNF277"
TCGA.AG.3909.01A	7	107531635	107546674	8	-0.4054	NEUTRAL	NA	1	DLD
TCGA.AA.A00N.01A	7	107555920	107571761	10	0.1613	NEUTRAL	NA	2	"DLD,LAMB1"
TCGA.AA.A00D.01A	7	107557700	107618465	26	-0.2069	NEUTRAL	NA	2	"DLD,LAMB1"
TCGA.AA.A00N.01A	7	107613398	107616107	3	0.1347	NEUTRAL	NA	1	LAMB1
TCGA.CK.5914.01A	7	107613398	107641962	9	0.3248	NEUTRAL	NA	1	LAMB1
TCGA.AG.3909.01A	7	107626417	107643226	5	0.0514	NEUTRAL	NA	1	LAMB1
TCGA.AA.A00D.01A	7	107664432	111982578	92	0.0199	NEUTRAL	NA	10	"C7orf66,DNAJB9,DOCK4,IMMP2L,LAMB4,LRRN3,NRCAM,PNPLA8,THAP5,ZNF277"
TCGA.AG.A00Y.01A	7	107703188	127630953	597	-0.1451	NEUTRAL	NA	63	"AASS,ANKRD7,ARF5,ASB15,ASZ1,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DNAJB9,DOCK4,FAM3C,FEZF1,FOXP2,FSCN3,GCC1,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LAMB4,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,NRCAM,PAX4,PNPLA8,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SND1,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.CK.5914.01A	7	107746235	107763494	7	0.1996	NEUTRAL	NA	1	LAMB4
TCGA.AA.3982	7	107778010	126794730	4631	-0.1568	NEUTRAL	NA	56	"AASS,ANKRD7,ASB15,ASZ1,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DNAJB9,DOCK4,FAM3C,FEZF1,FOXP2,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,NRCAM,PNPLA8,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277"
TCGA.AA.3941	7	107782589	107809926	14	-0.2674	NEUTRAL	NA	1	NRCAM
TCGA.CK.5914.01A	7	107815683	107849818	15	0.2098	NEUTRAL	NA	1	NRCAM
TCGA.AA.A00N.01A	7	107864122	108213326	23	-0.3207	NEUTRAL	NA	4	"DNAJB9,NRCAM,PNPLA8,THAP5"
TCGA.AA.3941	7	107870630	107886663	15	-0.4164	NEUTRAL	NA	1	NRCAM
TCGA.CK.5914.01A	7	107878107	108142908	9	0.2724	NEUTRAL	NA	2	"NRCAM,PNPLA8"
TCGA.AA.3844	7	107878352	127575549	4829	0.1158	NEUTRAL	NA	62	"AASS,ANKRD7,ARF5,ASB15,ASZ1,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DNAJB9,DOCK4,FAM3C,FEZF1,FOXP2,FSCN3,GCC1,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,NRCAM,PAX4,PNPLA8,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SND1,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AA.3941	7	107887959	108401494	182	0.3711	NEUTRAL	NA	4	"DNAJB9,NRCAM,PNPLA8,THAP5"
TCGA.AA.A010.01A	7	108128171	114292203	122	0.2597	NEUTRAL	NA	15	"C7orf60,C7orf66,DNAJB9,DOCK4,FOXP2,GPR85,IFRD1,IMMP2L,LRRN3,LSMEM1,PNPLA8,PPP1R3A,THAP5,TMEM168,ZNF277"
TCGA.CK.5914.01A	7	108154540	108213326	8	-0.5028	NEUTRAL	NA	3	"DNAJB9,PNPLA8,THAP5"
TCGA.AG.3909.01A	7	108204586	108213326	3	-0.4257	NEUTRAL	NA	2	"DNAJB9,THAP5"
TCGA.AA.3811	7	108206652	126794730	4449	-0.2557	NEUTRAL	NA	54	"AASS,ANKRD7,ASB15,ASZ1,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DNAJB9,DOCK4,FAM3C,FEZF1,FOXP2,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277"
TCGA.AA.3941	7	108408006	110736631	650	-0.2571	NEUTRAL	NA	3	"C7orf66,IMMP2L,LRRN3"
TCGA.AA.3495	7	108679895	159119219	14068	0.3016	NEUTRAL	NA	289	Too-Many
TCGA.F5.6812	7	108960349	159119219	13957	-0.0756	NEUTRAL	NA	289	Too-Many
TCGA.AG.3591	7	109061526	110020953	249	0.183	NEUTRAL	NA	0	None
TCGA.3L.AA1B	7	109142223	109170013	13	-0.1526	NEUTRAL	NA	0	None
TCGA.3L.AA1B	7	109171177	159119219	13911	0.373	NEUTRAL	NA	289	Too-Many
TCGA.AY.A69D	7	109240100	109304669	16	-0.307	NEUTRAL	NA	0	None
TCGA.AY.A69D	7	109320114	109569298	48	-0.2078	NEUTRAL	NA	0	None
TCGA.AD.6548	7	109542041	110610695	327	-0.4023	NEUTRAL	NA	1	IMMP2L
TCGA.AY.4070	7	109851355	116947195	1620	0.1945	NEUTRAL	NA	20	"C7orf60,CAPZA2,CAV1,CAV2,DOCK4,FOXP2,GPR85,IFRD1,IMMP2L,LRRN3,LSMEM1,MDFIC,MET,PPP1R3A,ST7,TES,TFEC,TMEM168,WNT2,ZNF277"
TCGA.G4.6626	7	109973243	159119219	13736	0.3448	NEUTRAL	NA	289	Too-Many
TCGA.AG.3591	7	110023360	112826323	744	-0.2155	NEUTRAL	NA	9	"C7orf60,DOCK4,GPR85,IFRD1,IMMP2L,LRRN3,LSMEM1,TMEM168,ZNF277"
TCGA.DM.A28F	7	110036897	132703195	5624	-0.0087	NEUTRAL	NA	99	"AASS,AHCYL2,ANKRD7,ARF5,ASB15,ASZ1,ATP6V1F,C7orf60,C7orf77,CADPS2,CALU,CAPZA2,CAV1,CAV2,CCDC136,CEP41,CFTR,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,CPED1,CTTNBP2,DOCK4,FAM3C,FAM71F1,FAM71F2,FEZF1,FLNC,FOXP2,FSCN3,GCC1,GPR37,GPR85,GRM8,HILPDA,HYAL4,IFRD1,IMMP2L,IMPDH1,ING3,IQUB,IRF5,KCND2,KCP,KLF14,KLHDC10,LEP,LMOD2,LOC100130705,LRRC4,LRRN3,LSM8,LSMEM1,MDFIC,MEST,MET,METTL2B,MKLN1,NDUFA5,NRF1,OPN1SW,PAX4,PLXNA4,PODXL,POT1,PPP1R3A,PRRT4,PTPRZ1,RBM28,RNF133,RNF148,SLC13A1,SMKR1,SMO,SND1,SPAM1,SSMEM1,ST7,STRIP2,TAS2R16,TES,TFEC,TMEM168,TMEM209,TMEM229A,TNPO3,TSGA13,TSPAN12,TSPAN33,UBE2H,WASL,WNT16,WNT2,ZC3HC1,ZNF277,ZNF800"
TCGA.F5.6464	7	110192160	110562803	124	0.2093	NEUTRAL	NA	1	IMMP2L
TCGA.AA.3679	7	110301345	110441629	62	0.3652	NEUTRAL	NA	1	IMMP2L
TCGA.DM.A1DB	7	110320068	110448307	55	0.0025	NEUTRAL	NA	1	IMMP2L
TCGA.AF.A56N	7	110390178	110493494	34	-0.3796	NEUTRAL	NA	1	IMMP2L
TCGA.AG.A026	7	110402317	110505222	37	-0.5033	NEUTRAL	NA	1	IMMP2L
TCGA.D5.6535	7	110402317	111032191	130	-0.121	NEUTRAL	NA	2	"IMMP2L,LRRN3"
TCGA.CM.5860	7	110410651	110432384	10	0.1228	NEUTRAL	NA	1	IMMP2L
TCGA.AA.3688	7	110419153	142338189	8396	-0.0075	NEUTRAL	NA	166	Too-Many
TCGA.AY.A69D	7	110427518	110611437	55	-0.0157	NEUTRAL	NA	1	IMMP2L
TCGA.AZ.6600	7	110432526	110892850	98	0.0534	NEUTRAL	NA	2	"IMMP2L,LRRN3"
TCGA.AA.3842	7	110441349	111199126	132	0.0622	NEUTRAL	NA	2	"IMMP2L,LRRN3"
TCGA.5M.AAT4	7	110448307	110591123	34	-0.3836	NEUTRAL	NA	1	IMMP2L
TCGA.EI.6508	7	110493494	122092424	2507	0.0556	NEUTRAL	NA	35	"AASS,ANKRD7,ASZ1,C7orf60,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DOCK4,FAM3C,FEZF1,FOXP2,GPR85,IFRD1,IMMP2L,ING3,KCND2,LRRN3,LSM8,LSMEM1,MDFIC,MET,PPP1R3A,PTPRZ1,ST7,TES,TFEC,TMEM168,TSPAN12,WNT16,WNT2,ZNF277"
TCGA.AF.A56N	7	110495001	159119219	13506	0.0216	NEUTRAL	NA	289	Too-Many
TCGA.AG.A026	7	110505972	112938741	581	0.0679	NEUTRAL	NA	9	"C7orf60,DOCK4,GPR85,IFRD1,IMMP2L,LRRN3,LSMEM1,TMEM168,ZNF277"
TCGA.D5.6531	7	110546112	110875152	63	-0.0833	NEUTRAL	NA	2	"IMMP2L,LRRN3"
TCGA.AA.3679	7	110561181	110762898	41	0.3265	NEUTRAL	NA	2	"IMMP2L,LRRN3"
TCGA.D5.6539	7	110591123	110717890	20	-0.221	NEUTRAL	NA	1	IMMP2L
TCGA.5M.AAT4	7	110594090	110678369	11	-0.1197	NEUTRAL	NA	1	IMMP2L
TCGA.A6.3807	7	110678927	152608305	11096	-0.0027	NEUTRAL	NA	269	Too-Many
TCGA.5M.AAT4	7	110678927	159119219	13501	0.3729	NEUTRAL	NA	289	Too-Many
TCGA.AY.A69D	7	110681640	159119219	13485	0.0072	NEUTRAL	NA	289	Too-Many
TCGA.G4.6303	7	110694606	111042354	60	-0.2653	NEUTRAL	NA	2	"IMMP2L,LRRN3"
TCGA.D5.6539	7	110718386	134631917	6057	0.2952	NEUTRAL	NA	107	Too-Many
TCGA.AA.3941	7	110745792	127062370	3861	-0.0492	NEUTRAL	NA	52	"AASS,ANKRD7,ASB15,ASZ1,C7orf60,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DOCK4,FAM3C,FEZF1,FOXP2,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,ST7,TAS2R16,TES,TFEC,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.A6.6653	7	110782695	150695194	10668	0.0047	NEUTRAL	NA	244	Too-Many
TCGA.AA.3524	7	110808563	110819561	3	-0.4035	NEUTRAL	NA	1	IMMP2L
TCGA.DM.A0XD	7	110808563	159119219	13433	-0.0058	NEUTRAL	NA	288	Too-Many
TCGA.AD.6548	7	110827092	111007249	24	-0.3984	NEUTRAL	NA	1	IMMP2L
TCGA.AA.3984	7	110827092	159119219	13459	-0.0184	NEUTRAL	NA	288	Too-Many
TCGA.AA.3860	7	110875152	142410879	8319	0.0226	NEUTRAL	NA	166	Too-Many
TCGA.EI.6513	7	110879250	156456278	12736	-0.0006	NEUTRAL	NA	278	Too-Many
TCGA.AZ.6600	7	110894777	111019950	16	-0.2987	NEUTRAL	NA	1	IMMP2L
TCGA.AA.3818	7	110981266	111151252	19	0.0341	NEUTRAL	NA	1	IMMP2L
TCGA.AD.6548	7	111019950	159119219	13396	0.0135	NEUTRAL	NA	288	Too-Many
TCGA.AZ.6600	7	111022480	149844638	10372	0.2706	NEUTRAL	NA	225	Too-Many
TCGA.G4.6294	7	111029563	159119219	13446	-0.0316	NEUTRAL	NA	288	Too-Many
TCGA.D5.6535	7	111042354	159119219	13442	0.2706	NEUTRAL	NA	288	Too-Many
TCGA.G4.6303	7	111044790	159119219	13446	0.0797	NEUTRAL	NA	288	Too-Many
TCGA.AA.3850	7	111074970	112398371	369	-0.10735	NEUTRAL	NA	5	"DOCK4,IFRD1,IMMP2L,LSMEM1,ZNF277"
TCGA.D5.5537	7	111112852	126400045	3543	0.0147	NEUTRAL	NA	50	"AASS,ANKRD7,ASB15,ASZ1,C7orf60,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DOCK4,FAM3C,FEZF1,FOXP2,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LMOD2,LSM8,LSMEM1,MDFIC,MET,NDUFA5,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,ST7,TAS2R16,TES,TFEC,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277"
TCGA.CM.5860	7	111199126	159089522	13384	0.2775	NEUTRAL	NA	288	Too-Many
TCGA.AG.3909.01A	7	111368318	111395514	11	0.2139	NEUTRAL	NA	1	DOCK4
TCGA.AA.3967.01A	7	111381548	111640473	40	-0.0225	NEUTRAL	NA	1	DOCK4
TCGA.AA.A01C.01A	7	111386334	158935086	2408	0.2649	NEUTRAL	NA	287	Too-Many
TCGA.AA.A02J.01A	7	111400195	158935086	2267	0.2915	NEUTRAL	NA	287	Too-Many
TCGA.AA.3967.01A	7	111644053	121985580	319	0.3071	NEUTRAL	NA	33	"AASS,ANKRD7,ASZ1,C7orf60,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DOCK4,FAM3C,FEZF1,FOXP2,GPR85,IFRD1,ING3,KCND2,LSM8,LSMEM1,MDFIC,MET,PPP1R3A,PTPRZ1,ST7,TES,TFEC,TMEM168,TSPAN12,WNT16,WNT2,ZNF277"
TCGA.AA.A00D.01A	7	112090691	112723646	19	0.3354	NEUTRAL	NA	5	"C7orf60,GPR85,IFRD1,LSMEM1,TMEM168"
TCGA.AA.A00N.01A	7	112095800	112723646	22	-0.2966	NEUTRAL	NA	5	"C7orf60,GPR85,IFRD1,LSMEM1,TMEM168"
TCGA.AG.3909.01A	7	112095800	112723646	22	0.1518	NEUTRAL	NA	5	"C7orf60,GPR85,IFRD1,LSMEM1,TMEM168"
TCGA.AG.3591	7	112838615	113355364	104	0.1741	NEUTRAL	NA	0	None
TCGA.AG.A026	7	112945295	116947195	822	-0.4448	NEUTRAL	NA	11	"CAPZA2,CAV1,CAV2,FOXP2,MDFIC,MET,PPP1R3A,ST7,TES,TFEC,WNT2"
TCGA.AG.3591	7	113356974	118458420	1089	-0.1925	NEUTRAL	NA	16	"ANKRD7,ASZ1,CAPZA2,CAV1,CAV2,CFTR,CTTNBP2,FOXP2,LSM8,MDFIC,MET,PPP1R3A,ST7,TES,TFEC,WNT2"
TCGA.AA.A00D.01A	7	113517756	120478782	157	0.0045	NEUTRAL	NA	18	"ANKRD7,ASZ1,CAPZA2,CAV1,CAV2,CFTR,CTTNBP2,FOXP2,KCND2,LSM8,MDFIC,MET,PPP1R3A,ST7,TES,TFEC,TSPAN12,WNT2"
TCGA.AA.3488	7	113888181	114158476	37	-0.1316	NEUTRAL	NA	1	FOXP2
TCGA.EI.7004	7	114096356	159119219	12729	-0.0056	NEUTRAL	NA	279	Too-Many
TCGA.AA.3488	7	114175726	137989705	6412	0.328	NEUTRAL	NA	115	Too-Many
TCGA.AA.A00F.01A	7	114268573	114284699	5	-0.1982	NEUTRAL	NA	1	FOXP2
TCGA.AA.3509.01A	7	114269795	116418802	53	0.3142	NEUTRAL	NA	7	"CAV1,CAV2,FOXP2,MDFIC,MET,TES,TFEC"
TCGA.AA.A00F.01A	7	114292203	117182016	86	0.2494	NEUTRAL	NA	12	"ASZ1,CAPZA2,CAV1,CAV2,CFTR,FOXP2,MDFIC,MET,ST7,TES,TFEC,WNT2"
TCGA.AA.3532	7	115586433	159119219	12465	0.0093	NEUTRAL	NA	277	Too-Many
TCGA.AA.3850	7	115867892	116758056	198	-0.08275	NEUTRAL	NA	6	"CAPZA2,CAV1,CAV2,MET,ST7,TES"
TCGA.CK.4948.01B	7	115874544	148513722	1827	0.2383	NEUTRAL	NA	199	Too-Many
TCGA.CK.5914.01A	7	116140302	116166542	5	-0.0811	NEUTRAL	NA	2	"CAV1,CAV2"
TCGA.AG.4009.01A	7	116199022	121773529	233	0.2845	NEUTRAL	NA	18	"AASS,ANKRD7,ASZ1,CAPZA2,CAV1,CFTR,CPED1,CTTNBP2,FAM3C,ING3,KCND2,LSM8,MET,PTPRZ1,ST7,TSPAN12,WNT16,WNT2"
TCGA.AA.A010.01A	7	116371675	116557732	28	0.037	NEUTRAL	NA	2	"CAPZA2,MET"
TCGA.AA.3509.01A	7	116421993	116759565	26	-0.2908	NEUTRAL	NA	3	"CAPZA2,MET,ST7"
TCGA.CK.5914.01A	7	116520102	116556109	9	0.1988	NEUTRAL	NA	1	CAPZA2
TCGA.AA.A010.01A	7	116654964	120480021	112	0.0501	NEUTRAL	NA	9	"ANKRD7,ASZ1,CFTR,CTTNBP2,KCND2,LSM8,ST7,TSPAN12,WNT2"
TCGA.AA.A00N.01A	7	116660615	117025704	34	0.3477	NEUTRAL	NA	3	"ASZ1,ST7,WNT2"
TCGA.AG.3882	7	116729115	159119219	12218	0.2798	NEUTRAL	NA	271	Too-Many
TCGA.AA.3850	7	116780965	117669519	231	-0.11195	NEUTRAL	NA	5	"ASZ1,CFTR,CTTNBP2,ST7,WNT2"
TCGA.AG.A026	7	116952670	122703536	1255	0.0919	NEUTRAL	NA	19	"AASS,ANKRD7,ASZ1,CADPS2,CFTR,CPED1,CTTNBP2,FAM3C,FEZF1,ING3,KCND2,LSM8,PTPRZ1,RNF133,RNF148,TAS2R16,TSPAN12,WNT16,WNT2"
TCGA.AG.3909.01A	7	116955074	116962913	3	-0.0355	NEUTRAL	NA	1	WNT2
TCGA.AA.3861.01A	7	117025704	128432392	432	0.2695	NEUTRAL	NA	49	"AASS,ANKRD7,ARF5,ASB15,ASZ1,C7orf77,CADPS2,CALU,CCDC136,CFTR,CPED1,CTTNBP2,FAM3C,FAM71F1,FAM71F2,FEZF1,FSCN3,GCC1,GPR37,GRM8,HILPDA,HYAL4,IMPDH1,ING3,IQUB,KCND2,LEP,LMOD2,LRRC4,LSM8,METTL2B,NDUFA5,OPN1SW,PAX4,POT1,PRRT4,PTPRZ1,RBM28,RNF133,RNF148,SLC13A1,SND1,SPAM1,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16,ZNF800"
TCGA.CK.5914.01A	7	117060190	117824192	58	0.3729	NEUTRAL	NA	4	"ASZ1,CFTR,CTTNBP2,LSM8"
TCGA.AA.A02K.01A	7	117144277	128521932	503	0.2644	NEUTRAL	NA	52	"AASS,ANKRD7,ARF5,ASB15,ATP6V1F,C7orf77,CADPS2,CALU,CCDC136,CFTR,CPED1,CTTNBP2,FAM3C,FAM71F1,FAM71F2,FEZF1,FLNC,FSCN3,GCC1,GPR37,GRM8,HILPDA,HYAL4,IMPDH1,ING3,IQUB,KCND2,KCP,LEP,LMOD2,LOC100130705,LRRC4,LSM8,METTL2B,NDUFA5,OPN1SW,PAX4,POT1,PRRT4,PTPRZ1,RBM28,RNF133,RNF148,SLC13A1,SND1,SPAM1,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16,ZNF800"
TCGA.D5.6923	7	117163046	154427671	10426	0.2185	NEUTRAL	NA	249	Too-Many
TCGA.A6.5666	7	117226903	159119219	12057	0.284	NEUTRAL	NA	268	Too-Many
TCGA.AG.3909.01A	7	117227784	117254629	10	-0.4317	NEUTRAL	NA	1	CFTR
TCGA.AG.3611.01A	7	117227784	117306941	16	-0.0012	NEUTRAL	NA	1	CFTR
TCGA.AA.A00F.01A	7	117267535	117450767	27	0.2195	NEUTRAL	NA	2	"CFTR,CTTNBP2"
TCGA.AG.3611.01A	7	117351564	130080693	531	0.2953	NEUTRAL	NA	69	"AASS,AHCYL2,ANKRD7,ARF5,ASB15,ATP6V1F,C7orf77,CADPS2,CALU,CCDC136,CEP41,CPA1,CPA2,CPA4,CPA5,CPED1,CTTNBP2,FAM3C,FAM71F1,FAM71F2,FEZF1,FLNC,FSCN3,GCC1,GPR37,GRM8,HILPDA,HYAL4,IMPDH1,ING3,IQUB,IRF5,KCND2,KCP,KLHDC10,LEP,LMOD2,LOC100130705,LRRC4,LSM8,METTL2B,NDUFA5,NRF1,OPN1SW,PAX4,POT1,PRRT4,PTPRZ1,RBM28,RNF133,RNF148,SLC13A1,SMKR1,SMO,SND1,SPAM1,SSMEM1,STRIP2,TAS2R16,TMEM209,TMEM229A,TNPO3,TSPAN12,TSPAN33,UBE2H,WASL,WNT16,ZC3HC1,ZNF800"
TCGA.AG.3727	7	117411795	127602668	2543	-0.0278	NEUTRAL	NA	35	"AASS,ANKRD7,ARF5,ASB15,C7orf77,CADPS2,CPED1,CTTNBP2,FAM3C,FEZF1,FSCN3,GCC1,GPR37,GRM8,HYAL4,ING3,IQUB,KCND2,LMOD2,LSM8,NDUFA5,PAX4,POT1,PTPRZ1,RNF133,RNF148,SLC13A1,SND1,SPAM1,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16,ZNF800"
TCGA.AG.3909.01A	7	117501214	117879892	10	-0.0807	NEUTRAL	NA	3	"ANKRD7,CTTNBP2,LSM8"
TCGA.AA.A00N.01A	7	117501214	121513486	75	-0.1182	NEUTRAL	NA	10	"ANKRD7,CPED1,CTTNBP2,FAM3C,ING3,KCND2,LSM8,PTPRZ1,TSPAN12,WNT16"
TCGA.AF.4110	7	117717012	133857288	4172	0.247	NEUTRAL	NA	78	"AASS,AHCYL2,ANKRD7,ARF5,ASB15,ATP6V1F,C7orf77,CADPS2,CALU,CCDC136,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,CPED1,EXOC4,FAM3C,FAM71F1,FAM71F2,FEZF1,FLNC,FSCN3,GCC1,GPR37,GRM8,HILPDA,HYAL4,IMPDH1,ING3,IQUB,IRF5,KCND2,KCP,KLF14,KLHDC10,LEP,LMOD2,LOC100130705,LRGUK,LRRC4,LSM8,MEST,METTL2B,MKLN1,NDUFA5,NRF1,OPN1SW,PAX4,PLXNA4,PODXL,POT1,PRRT4,PTPRZ1,RBM28,RNF133,RNF148,SLC13A1,SMKR1,SMO,SND1,SPAM1,SSMEM1,STRIP2,TAS2R16,TMEM209,TMEM229A,TNPO3,TSGA13,TSPAN12,TSPAN33,UBE2H,WASL,WNT16,ZC3HC1,ZNF800"
TCGA.CK.5914.01A	7	117825632	117879892	9	-0.4717	NEUTRAL	NA	2	"ANKRD7,LSM8"
TCGA.AA.A01R	7	117885736	118041732	28	-0.0647	NEUTRAL	NA	0	None
TCGA.AA.A01R	7	118136339	148411821	8476	-0.0037	NEUTRAL	NA	186	Too-Many
TCGA.AY.A71X	7	118423030	159119219	11771	-0.0145	NEUTRAL	NA	264	Too-Many
TCGA.AY.6386	7	118660613	118786592	15	-0.1956	NEUTRAL	NA	0	None
TCGA.G5.6572	7	119077483	145675924	7267	-0.0285	NEUTRAL	NA	183	Too-Many
TCGA.AF.2689	7	119467039	148701645	8310	0.2495	NEUTRAL	NA	188	Too-Many
TCGA.AA.A00F.01A	7	119914637	120591162	15	0.2081	NEUTRAL	NA	3	"ING3,KCND2,TSPAN12"
TCGA.AG.3591	7	120278544	126287004	1565	-0.1758	NEUTRAL	NA	26	"AASS,ASB15,C7orf77,CADPS2,CPED1,FAM3C,FEZF1,GPR37,GRM8,HYAL4,ING3,IQUB,KCND2,LMOD2,NDUFA5,POT1,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16"
TCGA.AY.4070	7	120334795	125445041	1295	0.3225	NEUTRAL	NA	25	"AASS,ASB15,C7orf77,CADPS2,CPED1,FAM3C,FEZF1,GPR37,HYAL4,ING3,IQUB,KCND2,LMOD2,NDUFA5,POT1,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16"
TCGA.AG.A00C.01A	7	120478782	120704232	20	0.2621	NEUTRAL	NA	3	"CPED1,ING3,TSPAN12"
TCGA.AG.3909.01A	7	120480021	120704232	19	-0.3603	NEUTRAL	NA	3	"CPED1,ING3,TSPAN12"
TCGA.CK.5914.01A	7	120604753	120704232	12	-0.0539	NEUTRAL	NA	2	"CPED1,ING3"
TCGA.AA.A010.01A	7	120655672	123197743	153	-0.054	NEUTRAL	NA	13	"AASS,CADPS2,CPED1,FAM3C,FEZF1,IQUB,NDUFA5,PTPRZ1,RNF133,RNF148,SLC13A1,TAS2R16,WNT16"
TCGA.AG.A00C.01A	7	120737706	121758373	80	-0.2157	NEUTRAL	NA	5	"AASS,CPED1,FAM3C,PTPRZ1,WNT16"
TCGA.AA.A00F.01A	7	120737706	121766371	80	0.1469	NEUTRAL	NA	5	"AASS,CPED1,FAM3C,PTPRZ1,WNT16"
TCGA.AA.A00D.01A	7	120737706	131163368	508	0.1043	NEUTRAL	NA	68	"AASS,AHCYL2,ARF5,ASB15,ATP6V1F,C7orf77,CADPS2,CALU,CCDC136,CEP41,COPG2,CPA1,CPA2,CPA4,CPA5,CPED1,FAM3C,FAM71F1,FAM71F2,FEZF1,FLNC,FSCN3,GCC1,GPR37,GRM8,HILPDA,HYAL4,IMPDH1,IQUB,IRF5,KCP,KLF14,KLHDC10,LEP,LMOD2,LOC100130705,LRRC4,MEST,METTL2B,MKLN1,NDUFA5,NRF1,OPN1SW,PAX4,POT1,PRRT4,PTPRZ1,RBM28,RNF133,RNF148,SLC13A1,SMKR1,SMO,SND1,SPAM1,SSMEM1,STRIP2,TAS2R16,TMEM209,TMEM229A,TNPO3,TSGA13,TSPAN33,UBE2H,WASL,WNT16,ZC3HC1,ZNF800"
TCGA.AG.3909.01A	7	120965426	120978894	4	-0.1781	NEUTRAL	NA	1	WNT16
TCGA.CK.5914.01A	7	120965426	120978894	4	-0.0887	NEUTRAL	NA	1	WNT16
TCGA.AG.3909.01A	7	120990458	121513486	10	0.291	NEUTRAL	NA	2	"FAM3C,PTPRZ1"
TCGA.CK.5914.01A	7	121012078	121637895	13	0.0252	NEUTRAL	NA	2	"FAM3C,PTPRZ1"
TCGA.AY.A54L.01A	7	121637895	158936978	2389	0.3497	NEUTRAL	NA	258	Too-Many
TCGA.AA.A00N.01A	7	121726018	121766371	13	0.369	NEUTRAL	NA	1	AASS
TCGA.AG.A036.01A	7	121747408	158627869	2408	0.2043	NEUTRAL	NA	255	Too-Many
TCGA.AG.A00C.01A	7	121766371	121960198	8	0.2762	NEUTRAL	NA	3	"AASS,CADPS2,FEZF1"
TCGA.AG.4009.01A	7	121942084	121960198	5	-0.4527	NEUTRAL	NA	2	"CADPS2,FEZF1"
TCGA.AF.3914.01A	7	121943202	127017193	122	-0.0116	NEUTRAL	NA	19	"ASB15,C7orf77,CADPS2,FEZF1,GPR37,GRM8,HYAL4,IQUB,LMOD2,NDUFA5,POT1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,WASL,ZNF800"
TCGA.AG.A00C.01A	7	121965484	127011767	117	-0.1888	NEUTRAL	NA	18	"ASB15,C7orf77,CADPS2,GPR37,GRM8,HYAL4,IQUB,LMOD2,NDUFA5,POT1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,WASL,ZNF800"
TCGA.AA.3967.01A	7	122000802	122757498	29	-0.1924	NEUTRAL	NA	5	"CADPS2,RNF133,RNF148,SLC13A1,TAS2R16"
TCGA.AG.4009.01A	7	122111381	122269265	10	-0.1265	NEUTRAL	NA	1	CADPS2
TCGA.AG.4009.01A	7	122303269	127011767	94	0.2758	NEUTRAL	NA	18	"ASB15,C7orf77,CADPS2,GPR37,GRM8,HYAL4,IQUB,LMOD2,NDUFA5,POT1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,WASL,ZNF800"
TCGA.AA.A00F.01A	7	122303269	129100076	278	0.3528	NEUTRAL	NA	45	"AHCYL2,ARF5,ASB15,ATP6V1F,C7orf77,CADPS2,CALU,CCDC136,FAM71F1,FAM71F2,FLNC,FSCN3,GCC1,GPR37,GRM8,HILPDA,HYAL4,IMPDH1,IQUB,IRF5,KCP,LEP,LMOD2,LOC100130705,LRRC4,METTL2B,NDUFA5,OPN1SW,PAX4,POT1,PRRT4,RBM28,RNF133,RNF148,SLC13A1,SMO,SND1,SPAM1,STRIP2,TAS2R16,TMEM229A,TNPO3,TSPAN33,WASL,ZNF800"
TCGA.EI.6508	7	122471380	122714000	89	0.0139	NEUTRAL	NA	2	"CADPS2,TAS2R16"
TCGA.AG.A026	7	122708548	122872502	43	-0.3857	NEUTRAL	NA	1	SLC13A1
TCGA.AA.3967.01A	7	122759083	127341169	119	0.2907	NEUTRAL	NA	19	"ARF5,ASB15,C7orf77,FSCN3,GCC1,GPR37,GRM8,HYAL4,IQUB,LMOD2,NDUFA5,PAX4,POT1,SLC13A1,SND1,SPAM1,TMEM229A,WASL,ZNF800"
TCGA.AG.A026	7	122872978	123381529	128	0.0077	NEUTRAL	NA	5	"ASB15,IQUB,LMOD2,NDUFA5,WASL"
TCGA.AA.A010.01A	7	123346283	126746498	44	-0.0062	NEUTRAL	NA	8	"C7orf77,GPR37,GRM8,HYAL4,POT1,SPAM1,TMEM229A,WASL"
TCGA.AG.A026	7	123397830	123448232	17	-0.0255	NEUTRAL	NA	0	None
TCGA.AG.A026	7	123450153	128092237	1327	-0.4868	NEUTRAL	NA	18	"ARF5,C7orf77,FSCN3,GCC1,GPR37,GRM8,HYAL4,IMPDH1,LEP,LRRC4,PAX4,POT1,PRRT4,RBM28,SND1,SPAM1,TMEM229A,ZNF800"
TCGA.AA.A00N.01A	7	123593574	124403997	10	-0.4247	NEUTRAL	NA	3	"GPR37,SPAM1,TMEM229A"
TCGA.AA.3684	7	123797844	127489606	1095	-0.2221	NEUTRAL	NA	10	"ARF5,C7orf77,FSCN3,GCC1,GPR37,GRM8,PAX4,POT1,SND1,ZNF800"
TCGA.AA.3867	7	125176630	136793114	3512	0.1784	NEUTRAL	NA	70	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,ARF5,ATP6V1F,BPGM,C7orf49,C7orf73,CALD1,CALU,CCDC136,CEP41,CHCHD3,CHRM2,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,FAM180A,FAM71F1,FAM71F2,FLNC,FSCN3,GCC1,GRM8,HILPDA,IMPDH1,IRF5,KCP,KLF14,KLHDC10,LEP,LOC100130705,LRGUK,LRRC4,LUZP6,MEST,METTL2B,MKLN1,MTPN,NRF1,NUP205,OPN1SW,PAX4,PLXNA4,PODXL,PRRT4,RBM28,SLC13A4,SLC35B4,SMKR1,SMO,SND1,SSMEM1,STRA8,STRIP2,TMEM140,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,WDR91,ZC3HC1,ZNF800"
TCGA.AY.4070	7	125445581	126023636	169	-0.3262	NEUTRAL	NA	0	None
TCGA.AA.3673	7	125663652	159119219	10111	0.0146	NEUTRAL	NA	239	Too-Many
TCGA.AY.4070	7	126033305	126421749	130	0.3525	NEUTRAL	NA	1	GRM8
TCGA.BM.6198	7	126055186	126113334	24	-0.47435	NEUTRAL	NA	1	GRM8
TCGA.EI.6508	7	126120957	126356346	82	0.0685	NEUTRAL	NA	1	GRM8
TCGA.BM.6198	7	126120957	128092237	623	-0.05925	NEUTRAL	NA	12	"ARF5,FSCN3,GCC1,GRM8,IMPDH1,LEP,LRRC4,PAX4,PRRT4,RBM28,SND1,ZNF800"
TCGA.AA.A01T	7	126125052	126307296	56	-0.0353	NEUTRAL	NA	1	GRM8
TCGA.AA.3975	7	126229424	126472149	76	-0.0372	NEUTRAL	NA	1	GRM8
TCGA.AG.3591	7	126291875	126589350	87	0.203	NEUTRAL	NA	1	GRM8
TCGA.AA.A01T	7	126312222	159119219	9905	0.3211	NEUTRAL	NA	239	Too-Many
TCGA.AY.4070	7	126423694	128389866	575	-0.3888	NEUTRAL	NA	17	"ARF5,CALU,FAM71F1,FAM71F2,FSCN3,GCC1,GRM8,HILPDA,IMPDH1,LEP,LRRC4,METTL2B,PAX4,PRRT4,RBM28,SND1,ZNF800"
TCGA.AG.3591	7	126590851	135683370	2726	-0.2213	NEUTRAL	NA	69	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,ARF5,ATP6V1F,BPGM,C7orf49,C7orf73,CALD1,CALU,CCDC136,CEP41,CHCHD3,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,FAM180A,FAM71F1,FAM71F2,FLNC,FSCN3,GCC1,GRM8,HILPDA,IMPDH1,IRF5,KCP,KLF14,KLHDC10,LEP,LOC100130705,LRGUK,LRRC4,LUZP6,MEST,METTL2B,MKLN1,MTPN,NRF1,NUP205,OPN1SW,PAX4,PLXNA4,PODXL,PRRT4,RBM28,SLC13A4,SLC35B4,SMKR1,SMO,SND1,SSMEM1,STRA8,STRIP2,TMEM140,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,WDR91,ZC3HC1,ZNF800"
TCGA.DM.A28H	7	126720842	159119219	9768	0.0049	NEUTRAL	NA	239	Too-Many
TCGA.D5.5537	7	126772110	159119219	9735	0.0062	NEUTRAL	NA	239	Too-Many
TCGA.AA.3811	7	126795616	135845436	2699	0.1591	NEUTRAL	NA	69	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,ARF5,ATP6V1F,BPGM,C7orf49,C7orf73,CALD1,CALU,CCDC136,CEP41,CHCHD3,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,FAM180A,FAM71F1,FAM71F2,FLNC,FSCN3,GCC1,GRM8,HILPDA,IMPDH1,IRF5,KCP,KLF14,KLHDC10,LEP,LOC100130705,LRGUK,LRRC4,LUZP6,MEST,METTL2B,MKLN1,MTPN,NRF1,NUP205,OPN1SW,PAX4,PLXNA4,PODXL,PRRT4,RBM28,SLC13A4,SLC35B4,SMKR1,SMO,SND1,SSMEM1,STRA8,STRIP2,TMEM140,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,WDR91,ZC3HC1,ZNF800"
TCGA.AG.3909.01A	7	126882741	127234497	14	-0.3713	NEUTRAL	NA	5	"ARF5,FSCN3,GCC1,GRM8,ZNF800"
TCGA.AG.A01W.01A	7	127022576	127039172	8	-0.3239	NEUTRAL	NA	1	ZNF800
TCGA.CK.5914.01A	7	127026073	127239383	14	-0.1119	NEUTRAL	NA	4	"ARF5,FSCN3,GCC1,ZNF800"
TCGA.AA.3850	7	127071462	127554106	127	0.00435	NEUTRAL	NA	5	"ARF5,FSCN3,GCC1,PAX4,SND1"
TCGA.A6.2674	7	127108867	154440684	7995	0.0196	NEUTRAL	NA	218	Too-Many
TCGA.AA.A010.01A	7	127222016	127637699	39	-0.231	NEUTRAL	NA	5	"ARF5,FSCN3,GCC1,PAX4,SND1"
TCGA.AA.A02H.01A	7	127229081	127240208	10	-0.3112	NEUTRAL	NA	2	"ARF5,FSCN3"
TCGA.AG.A00C.01A	7	127230099	128694658	185	0.0674	NEUTRAL	NA	22	"ARF5,ATP6V1F,CALU,CCDC136,FAM71F1,FAM71F2,FLNC,FSCN3,HILPDA,IMPDH1,IRF5,KCP,LEP,LOC100130705,LRRC4,METTL2B,OPN1SW,PAX4,PRRT4,RBM28,SND1,TNPO3"
TCGA.AF.3914.01A	7	127230970	130347786	373	-0.0772	NEUTRAL	NA	40	"AHCYL2,ARF5,ATP6V1F,CALU,CCDC136,CEP41,COPG2,CPA1,CPA2,CPA4,CPA5,FAM71F1,FAM71F2,FLNC,FSCN3,HILPDA,IMPDH1,IRF5,KCP,KLHDC10,LEP,LOC100130705,LRRC4,MEST,METTL2B,NRF1,OPN1SW,PAX4,PRRT4,RBM28,SMKR1,SMO,SND1,SSMEM1,STRIP2,TMEM209,TNPO3,TSPAN33,UBE2H,ZC3HC1"
TCGA.AG.4009.01A	7	127238462	127637699	29	0.2775	NEUTRAL	NA	3	"FSCN3,PAX4,SND1"
TCGA.AA.A02H.01A	7	127251097	127253486	5	0.2855	NEUTRAL	NA	1	PAX4
TCGA.D5.6538	7	127287696	127345991	14	0.3577	NEUTRAL	NA	1	SND1
TCGA.AA.3967.01A	7	127342433	127569194	10	-0.1696	NEUTRAL	NA	1	SND1
TCGA.AG.3906.01A	7	127344841	128040152	48	0.3173	NEUTRAL	NA	6	"IMPDH1,LEP,LRRC4,PRRT4,RBM28,SND1"
TCGA.AA.3684	7	127506079	142267509	4336	0.2036	NEUTRAL	NA	110	Too-Many
TCGA.AG.A01W.01A	7	127508597	128275820	108	0.1519	NEUTRAL	NA	8	"HILPDA,IMPDH1,LEP,LRRC4,METTL2B,PRRT4,RBM28,SND1"
TCGA.AA.3850	7	127557492	132508580	1383	0.30045	NEUTRAL	NA	43	"AHCYL2,ATP6V1F,CALU,CCDC136,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,FAM71F1,FAM71F2,FLNC,HILPDA,IMPDH1,IRF5,KCP,KLF14,KLHDC10,LEP,LOC100130705,LRRC4,MEST,METTL2B,MKLN1,NRF1,OPN1SW,PLXNA4,PODXL,PRRT4,RBM28,SMKR1,SMO,SND1,SSMEM1,STRIP2,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,ZC3HC1"
TCGA.AA.3509.01A	7	127569194	140404601	999	-0.0666	NEUTRAL	NA	93	"ADCK2,AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,ATP6V1F,BPGM,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CALU,CCDC136,CEP41,CHCHD3,CHRM2,CLEC2L,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DENND2A,DGKI,EXOC4,FAM180A,FAM71F1,FAM71F2,FLNC,HILPDA,HIPK2,IMPDH1,IRF5,KCP,KDM7A,KIAA1549,KLF14,KLHDC10,KLRG2,LEP,LOC100130705,LOC100130880,LRGUK,LRRC4,LUC7L2,LUZP6,MEST,METTL2B,MKLN1,MKRN1,MTPN,NDUFB2,NRF1,NUP205,OPN1SW,PARP12,PLXNA4,PODXL,PRRT4,PTN,RAB19,RBM28,SLC13A4,SLC35B4,SLC37A3,SMKR1,SMO,SND1,SSMEM1,STRA8,STRIP2,SVOPL,TBXAS1,TMEM140,TMEM209,TMEM213,TNPO3,TRIM24,TSGA13,TSPAN33,TTC26,UBE2H,UBN2,WDR91,ZC3HAV1,ZC3HAV1L,ZC3HC1"
TCGA.AA.A00N.01A	7	127637699	127950850	16	-0.0808	NEUTRAL	NA	4	"LEP,LRRC4,RBM28,SND1"
TCGA.AG.A00Y.01A	7	127637699	158935086	1899	0.193	NEUTRAL	NA	233	Too-Many
TCGA.CK.5914.01A	7	127668695	127950850	15	0.1056	NEUTRAL	NA	4	"LEP,LRRC4,RBM28,SND1"
TCGA.AG.A023.01A	7	127670091	140255383	876	-0.0426	NEUTRAL	NA	91	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,ATP6V1F,BPGM,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CALU,CCDC136,CEP41,CHCHD3,CHRM2,CLEC2L,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DENND2A,DGKI,EXOC4,FAM180A,FAM71F1,FAM71F2,FLNC,HILPDA,HIPK2,IMPDH1,IRF5,KCP,KDM7A,KIAA1549,KLF14,KLHDC10,KLRG2,LEP,LOC100130705,LOC100130880,LRGUK,LRRC4,LUC7L2,LUZP6,MEST,METTL2B,MKLN1,MKRN1,MTPN,NRF1,NUP205,OPN1SW,PARP12,PLXNA4,PODXL,PRRT4,PTN,RAB19,RBM28,SLC13A4,SLC35B4,SLC37A3,SMKR1,SMO,SND1,SSMEM1,STRA8,STRIP2,SVOPL,TBXAS1,TMEM140,TMEM209,TMEM213,TNPO3,TRIM24,TSGA13,TSPAN33,TTC26,UBE2H,UBN2,WDR91,ZC3HAV1,ZC3HAV1L,ZC3HC1"
TCGA.AA.A010.01A	7	127714516	127957993	16	0.2369	NEUTRAL	NA	3	"LEP,RBM28,SND1"
TCGA.AG.4009.01A	7	127714516	127970825	21	0.3029	NEUTRAL	NA	3	"LEP,RBM28,SND1"
TCGA.AA.A02H.01A	7	127725711	128034891	27	0.1521	NEUTRAL	NA	5	"IMPDH1,LEP,PRRT4,RBM28,SND1"
TCGA.AG.A01J.01A	7	127726941	158935086	1832	0.1757	NEUTRAL	NA	232	Too-Many
TCGA.AA.A01Q.01A	7	127729491	127999176	26	0.0421	NEUTRAL	NA	4	"LEP,PRRT4,RBM28,SND1"
TCGA.AA.3866	7	127888688	149636503	6324	0.0914	NEUTRAL	NA	168	Too-Many
TCGA.AA.A00N.01A	7	127970825	128607287	143	-0.4006	NEUTRAL	NA	16	"ATP6V1F,CALU,CCDC136,FAM71F1,FAM71F2,FLNC,HILPDA,IMPDH1,IRF5,KCP,LOC100130705,METTL2B,OPN1SW,PRRT4,RBM28,TNPO3"
TCGA.AG.4009.01A	7	127973291	128116798	20	-0.3256	NEUTRAL	NA	5	"HILPDA,IMPDH1,METTL2B,PRRT4,RBM28"
TCGA.CK.5914.01A	7	127973291	128133808	30	-0.2583	NEUTRAL	NA	5	"HILPDA,IMPDH1,METTL2B,PRRT4,RBM28"
TCGA.AA.A01Q.01A	7	128032985	128097276	12	-0.472	NEUTRAL	NA	2	"HILPDA,IMPDH1"
TCGA.AA.A02H.01A	7	128040820	128804264	105	0.3102	NEUTRAL	NA	15	"ATP6V1F,CALU,CCDC136,FAM71F1,FAM71F2,FLNC,HILPDA,IMPDH1,IRF5,KCP,LOC100130705,METTL2B,OPN1SW,TNPO3,TSPAN33"
TCGA.AG.3906.01A	7	128097276	128117083	3	-0.1679	NEUTRAL	NA	2	"HILPDA,METTL2B"
TCGA.AG.A026	7	128098070	133750832	1548	-0.0135	NEUTRAL	NA	38	"AHCYL2,ATP6V1F,CALU,CCDC136,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,FAM71F1,FAM71F2,FLNC,HILPDA,IRF5,KCP,KLF14,KLHDC10,LOC100130705,MEST,METTL2B,MKLN1,NRF1,OPN1SW,PLXNA4,PODXL,SMKR1,SMO,SSMEM1,STRIP2,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,ZC3HC1"
TCGA.AA.A01Q.01A	7	128116798	143084770	923	0.1365	NEUTRAL	NA	121	Too-Many
TCGA.AA.A00L.01A	7	128117083	128415021	24	0.352	NEUTRAL	NA	5	"CALU,FAM71F1,FAM71F2,METTL2B,OPN1SW"
TCGA.BM.6198	7	128137352	133870805	1574	-0.06585	NEUTRAL	NA	38	"AHCYL2,ATP6V1F,CALU,CCDC136,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,FAM71F1,FAM71F2,FLNC,IRF5,KCP,KLF14,KLHDC10,LOC100130705,LRGUK,MEST,METTL2B,MKLN1,NRF1,OPN1SW,PLXNA4,PODXL,SMKR1,SMO,SSMEM1,STRIP2,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,ZC3HC1"
TCGA.CK.5914.01A	7	128138038	128475332	44	0.2726	NEUTRAL	NA	7	"CALU,CCDC136,FAM71F1,FAM71F2,FLNC,METTL2B,OPN1SW"
TCGA.AG.A01W.01A	7	128283762	128335743	28	0.219	NEUTRAL	NA	1	FAM71F2
TCGA.AG.4009.01A	7	128312414	128317590	3	-0.398	NEUTRAL	NA	1	FAM71F2
TCGA.AG.3909.01A	7	128312414	128322986	5	-0.3043	NEUTRAL	NA	1	FAM71F2
TCGA.AG.3906.01A	7	128312414	128449452	33	0.0358	NEUTRAL	NA	5	"CALU,CCDC136,FAM71F1,FAM71F2,OPN1SW"
TCGA.AG.4009.01A	7	128320048	128432392	21	0.2938	NEUTRAL	NA	5	"CALU,CCDC136,FAM71F1,FAM71F2,OPN1SW"
TCGA.AA.A010.01A	7	128322986	128434360	21	-0.2058	NEUTRAL	NA	5	"CALU,CCDC136,FAM71F1,FAM71F2,OPN1SW"
TCGA.AG.A020	7	128324778	142605220	4242	0.3435	NEUTRAL	NA	106	Too-Many
TCGA.AG.3909.01A	7	128355477	128434360	20	0.355	NEUTRAL	NA	4	"CALU,CCDC136,FAM71F1,OPN1SW"
TCGA.AG.A01W.01A	7	128384479	128591532	27	0.2482	NEUTRAL	NA	8	"ATP6V1F,CALU,CCDC136,FLNC,IRF5,KCP,LOC100130705,OPN1SW"
TCGA.AY.4070	7	128393949	133372850	1381	0.015	NEUTRAL	NA	34	"AHCYL2,ATP6V1F,CALU,CCDC136,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,FLNC,IRF5,KCP,KLF14,KLHDC10,LOC100130705,MEST,MKLN1,NRF1,OPN1SW,PLXNA4,PODXL,SMKR1,SMO,SSMEM1,STRIP2,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,ZC3HC1"
TCGA.AA.A00L.01A	7	128415535	130067730	191	0.0639	NEUTRAL	NA	24	"AHCYL2,ATP6V1F,CCDC136,CEP41,CPA1,CPA2,CPA4,CPA5,FLNC,IRF5,KCP,KLHDC10,LOC100130705,NRF1,OPN1SW,SMKR1,SMO,SSMEM1,STRIP2,TMEM209,TNPO3,TSPAN33,UBE2H,ZC3HC1"
TCGA.AA.3939.01A	7	128432392	128505392	50	-0.0125	NEUTRAL	NA	3	"ATP6V1F,CCDC136,FLNC"
TCGA.AG.4009.01A	7	128434360	128481217	23	-0.381	NEUTRAL	NA	2	"CCDC136,FLNC"
TCGA.AG.3909.01A	7	128441202	128450144	8	-0.3955	NEUTRAL	NA	1	CCDC136
TCGA.AG.3909.01A	7	128451802	128483230	15	0.1552	NEUTRAL	NA	2	"CCDC136,FLNC"
TCGA.CK.5914.01A	7	128477187	128597251	66	-0.1882	NEUTRAL	NA	6	"ATP6V1F,FLNC,IRF5,KCP,LOC100130705,TNPO3"
TCGA.AG.4009.01A	7	128482238	128694658	53	0.2253	NEUTRAL	NA	6	"ATP6V1F,FLNC,IRF5,KCP,LOC100130705,TNPO3"
TCGA.AG.3909.01A	7	128483798	128607287	32	-0.3501	NEUTRAL	NA	6	"ATP6V1F,FLNC,IRF5,KCP,LOC100130705,TNPO3"
TCGA.AG.A01L.01A	7	128496551	141464037	852	0.1785	NEUTRAL	NA	88	"ADCK2,AGBL3,AGK,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,ATP6V1F,BPGM,BRAF,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CEP41,CHCHD3,CHRM2,CLEC2L,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DENND2A,DGKI,EXOC4,FAM180A,FLNC,HIPK2,IRF5,KCP,KDM7A,KIAA1147,KIAA1549,KLF14,KLHDC10,KLRG2,LOC100130705,LOC100130880,LRGUK,LUC7L2,LUZP6,MEST,MKLN1,MKRN1,MRPS33,MTPN,NDUFB2,NRF1,NUP205,PARP12,PLXNA4,PODXL,PTN,RAB19,SLC13A4,SLC35B4,SLC37A3,SMKR1,SMO,SSBP1,SSMEM1,STRA8,STRIP2,SVOPL,TAS2R3,TBXAS1,TMEM140,TMEM178B,TMEM209,TMEM213,TNPO3,TRIM24,TSGA13,TSPAN33,TTC26,UBE2H,UBN2,WDR91,WEE2,ZC3HAV1,ZC3HAV1L,ZC3HC1"
TCGA.AA.A00Q.01A	7	128502920	131163368	220	0.3446	NEUTRAL	NA	26	"AHCYL2,ATP6V1F,CEP41,COPG2,CPA1,CPA2,CPA4,CPA5,IRF5,KCP,KLF14,KLHDC10,LOC100130705,MEST,MKLN1,NRF1,SMKR1,SMO,SSMEM1,STRIP2,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,ZC3HC1"
TCGA.AG.3906.01A	7	128505392	129098009	71	0.1101	NEUTRAL	NA	9	"AHCYL2,ATP6V1F,IRF5,KCP,LOC100130705,SMO,STRIP2,TNPO3,TSPAN33"
TCGA.AA.3939.01A	7	128517046	128524004	8	-0.4668	NEUTRAL	NA	1	KCP
TCGA.AA.3939.01A	7	128524785	140219379	829	0.1253	NEUTRAL	NA	75	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CEP41,CHCHD3,CHRM2,CLEC2L,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DENND2A,DGKI,EXOC4,FAM180A,HIPK2,IRF5,KCP,KDM7A,KIAA1549,KLF14,KLHDC10,KLRG2,LOC100130880,LRGUK,LUC7L2,LUZP6,MEST,MKLN1,MKRN1,MTPN,NRF1,NUP205,PARP12,PLXNA4,PODXL,PTN,RAB19,SLC13A4,SLC35B4,SLC37A3,SMKR1,SMO,SSMEM1,STRA8,STRIP2,SVOPL,TBXAS1,TMEM140,TMEM209,TMEM213,TNPO3,TRIM24,TSGA13,TSPAN33,TTC26,UBE2H,UBN2,WDR91,ZC3HAV1,ZC3HAV1L,ZC3HC1"
TCGA.AA.A010.01A	7	128547095	128694658	31	0.0494	NEUTRAL	NA	3	"IRF5,KCP,TNPO3"
TCGA.A6.3808.01A	7	128548497	143174939	1109	0.3137	NEUTRAL	NA	114	Too-Many
TCGA.AA.A02K.01A	7	128585860	139838852	799	0.3311	NEUTRAL	NA	70	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CEP41,CHCHD3,CHRM2,CLEC2L,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DGKI,EXOC4,FAM180A,HIPK2,IRF5,KDM7A,KIAA1549,KLF14,KLHDC10,KLRG2,LOC100130880,LRGUK,LUC7L2,LUZP6,MEST,MKLN1,MTPN,NRF1,NUP205,PARP12,PLXNA4,PODXL,PTN,SLC13A4,SLC35B4,SMKR1,SMO,SSMEM1,STRA8,STRIP2,SVOPL,TBXAS1,TMEM140,TMEM209,TMEM213,TNPO3,TRIM24,TSGA13,TSPAN33,TTC26,UBE2H,UBN2,WDR91,ZC3HAV1,ZC3HAV1L,ZC3HC1"
TCGA.AG.A015.01A	7	128597251	142997276	983	0.2978	NEUTRAL	NA	107	Too-Many
TCGA.AG.A01W.01A	7	128638717	128871039	20	0.2866	NEUTRAL	NA	4	"AHCYL2,SMO,TNPO3,TSPAN33"
TCGA.AG.3909.01A	7	128801450	128851953	17	-0.4043	NEUTRAL	NA	2	"SMO,TSPAN33"
TCGA.AA.A00N.01A	7	128828972	128864881	12	-0.1439	NEUTRAL	NA	2	"AHCYL2,SMO"
TCGA.AA.A010.01A	7	128843178	128851459	9	-0.3263	NEUTRAL	NA	1	SMO
TCGA.AG.4009.01A	7	128843178	128851459	9	-0.3807	NEUTRAL	NA	1	SMO
TCGA.AG.A00C.01A	7	128843178	129098009	35	0.0393	NEUTRAL	NA	3	"AHCYL2,SMO,STRIP2"
TCGA.AA.A02H.01A	7	128845004	134131995	292	0.3243	NEUTRAL	NA	27	"AHCYL2,AKR1B1,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,KLF14,KLHDC10,LRGUK,MEST,MKLN1,NRF1,PLXNA4,PODXL,SLC35B4,SMKR1,SMO,SSMEM1,STRIP2,TMEM209,TSGA13,UBE2H,ZC3HC1"
TCGA.CK.5914.01A	7	128851953	129064668	16	0.3392	NEUTRAL	NA	2	"AHCYL2,SMO"
TCGA.AA.A010.01A	7	128851953	129079800	19	0.3372	NEUTRAL	NA	3	"AHCYL2,SMO,STRIP2"
TCGA.AG.4009.01A	7	128851953	129091414	20	0.3524	NEUTRAL	NA	3	"AHCYL2,SMO,STRIP2"
TCGA.AG.A01W.01A	7	128878659	128886527	9	-0.3998	NEUTRAL	NA	1	AHCYL2
TCGA.AA.3844	7	128934572	129072023	25	0.2272	NEUTRAL	NA	1	AHCYL2
TCGA.AA.3941	7	128986518	129072023	17	0.2032	NEUTRAL	NA	1	AHCYL2
TCGA.AA.3861.01A	7	129037024	131817761	204	-0.0759	NEUTRAL	NA	21	"AHCYL2,CEP41,COPG2,CPA1,CPA2,CPA4,CPA5,KLF14,KLHDC10,MEST,MKLN1,NRF1,PLXNA4,PODXL,SMKR1,SSMEM1,STRIP2,TMEM209,TSGA13,UBE2H,ZC3HC1"
TCGA.AA.3862.01A	7	129037024	141757961	890	0.0389	NEUTRAL	NA	87	"ADCK2,AGBL3,AGK,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,BRAF,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CEP41,CHCHD3,CHRM2,CLEC2L,CLEC5A,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DENND2A,DGKI,EXOC4,FAM180A,HIPK2,KDM7A,KIAA1147,KIAA1549,KLF14,KLHDC10,KLRG2,LOC100130880,LRGUK,LUC7L2,LUZP6,MEST,MGAM,MKLN1,MKRN1,MRPS33,MTPN,NDUFB2,NRF1,NUP205,OR9A4,PARP12,PLXNA4,PODXL,PRSS37,PTN,RAB19,SLC13A4,SLC35B4,SLC37A3,SMKR1,SSBP1,SSMEM1,STRA8,STRIP2,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM140,TMEM178B,TMEM209,TMEM213,TRIM24,TSGA13,TTC26,UBE2H,UBN2,WDR91,WEE2,ZC3HAV1,ZC3HAV1L,ZC3HC1"
TCGA.AA.A00N.01A	7	129045607	129062631	5	-0.029	NEUTRAL	NA	1	AHCYL2
TCGA.AA.3982	7	129049506	129068977	4	-0.2817	NEUTRAL	NA	1	AHCYL2
TCGA.AG.3909.01A	7	129053392	129083811	7	0.0314	NEUTRAL	NA	2	"AHCYL2,STRIP2"
TCGA.CK.5914.01A	7	129091414	129099290	9	0.2196	NEUTRAL	NA	1	STRIP2
TCGA.AA.A00N.01A	7	129091414	129102748	11	-0.0364	NEUTRAL	NA	1	STRIP2
TCGA.AG.4009.01A	7	129093049	129100076	9	-0.0037	NEUTRAL	NA	1	STRIP2
TCGA.AG.3909.01A	7	129107140	129317449	8	-0.1415	NEUTRAL	NA	3	"NRF1,SMKR1,STRIP2"
TCGA.AG.A01W.01A	7	129261966	129467979	15	0.0268	NEUTRAL	NA	1	NRF1
TCGA.AA.A010.01A	7	129297168	129520677	19	0.2122	NEUTRAL	NA	2	"NRF1,UBE2H"
TCGA.AG.3906.01A	7	129297168	134222889	266	-0.0171	NEUTRAL	NA	24	"AKR1B1,AKR1B10,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,KLF14,KLHDC10,LRGUK,MEST,MKLN1,NRF1,PLXNA4,PODXL,SLC35B4,SSMEM1,TMEM209,TSGA13,UBE2H,ZC3HC1"
TCGA.AG.A00C.01A	7	129311249	129367044	8	-0.0803	NEUTRAL	NA	1	NRF1
TCGA.AA.A00F.01A	7	129311249	130080693	94	0.3341	NEUTRAL	NA	11	"CEP41,CPA1,CPA2,CPA4,CPA5,KLHDC10,NRF1,SSMEM1,TMEM209,UBE2H,ZC3HC1"
TCGA.AG.A00C.01A	7	129394829	129519349	7	0.305	NEUTRAL	NA	2	"NRF1,UBE2H"
TCGA.AG.A00C.01A	7	129520677	129668692	8	-0.2377	NEUTRAL	NA	2	"UBE2H,ZC3HC1"
TCGA.AA.3982	7	129536702	133060535	1113	0.3694	NEUTRAL	NA	19	"CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,KLF14,KLHDC10,MEST,MKLN1,PLXNA4,PODXL,SSMEM1,TMEM209,TSGA13,UBE2H,ZC3HC1"
TCGA.AG.A01W.01A	7	129605427	129814860	55	0.0702	NEUTRAL	NA	3	"KLHDC10,TMEM209,ZC3HC1"
TCGA.AG.A00C.01A	7	129679259	129813434	15	0.214	NEUTRAL	NA	3	"KLHDC10,TMEM209,ZC3HC1"
TCGA.AA.A010.01A	7	129736708	129825011	17	-0.3835	NEUTRAL	NA	2	"KLHDC10,TMEM209"
TCGA.AG.3909.01A	7	129756287	129813434	11	0.1439	NEUTRAL	NA	2	"KLHDC10,TMEM209"
TCGA.AG.A00C.01A	7	129815320	130050901	62	-0.173	NEUTRAL	NA	7	"CEP41,CPA1,CPA2,CPA4,CPA5,SSMEM1,TMEM209"
TCGA.AA.A00N.01A	7	129821414	129944281	27	0.1191	NEUTRAL	NA	4	"CPA2,CPA4,SSMEM1,TMEM209"
TCGA.CK.5914.01A	7	129842335	129940617	21	-0.0392	NEUTRAL	NA	4	"CPA2,CPA4,SSMEM1,TMEM209"
TCGA.AG.A01W.01A	7	129929674	129948908	26	-0.1173	NEUTRAL	NA	1	CPA4
TCGA.AG.A01N.01A	7	129944281	154429457	1395	0.2566	NEUTRAL	NA	183	Too-Many
TCGA.AG.A01W.01A	7	129952348	135312267	304	0.3221	NEUTRAL	NA	27	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,CALD1,CEP41,CHCHD3,CNOT4,COPG2,CPA1,CPA4,CPA5,EXOC4,KLF14,LRGUK,MEST,MKLN1,NUP205,PLXNA4,PODXL,SLC35B4,STRA8,TMEM140,TSGA13,WDR91"
TCGA.AA.A00N.01A	7	130039838	130132078	11	0.1867	NEUTRAL	NA	2	"CEP41,MEST"
TCGA.AG.3909.01A	7	130056686	130148365	17	-0.2357	NEUTRAL	NA	3	"CEP41,COPG2,MEST"
TCGA.AG.3611.01A	7	130135167	130144732	10	-0.0781	NEUTRAL	NA	1	MEST
TCGA.AG.4009.01A	7	130135167	130417908	28	-0.149	NEUTRAL	NA	4	"COPG2,KLF14,MEST,TSGA13"
TCGA.CK.5914.01A	7	130135167	130417908	31	-0.1645	NEUTRAL	NA	4	"COPG2,KLF14,MEST,TSGA13"
TCGA.AG.A00C.01A	7	130148365	130337652	6	-0.0056	NEUTRAL	NA	1	COPG2
TCGA.AG.3909.01A	7	130347786	130357545	6	-0.4938	NEUTRAL	NA	2	"COPG2,TSGA13"
TCGA.AG.3611.01A	7	130353812	138281115	327	0.3542	NEUTRAL	NA	34	"AGBL3,AKR1B1,AKR1B10,AKR1B15,AKR1D1,BPGM,C7orf49,C7orf73,CALD1,CHCHD3,CHRM2,CNOT4,CREB3L2,DGKI,EXOC4,FAM180A,KLF14,LOC100130880,LRGUK,LUZP6,MKLN1,MTPN,NUP205,PLXNA4,PODXL,PTN,SLC13A4,SLC35B4,STRA8,SVOPL,TMEM140,TRIM24,TSGA13,WDR91"
TCGA.AA.A00L.01A	7	130363945	135635312	241	0.0453	NEUTRAL	NA	26	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CHCHD3,CNOT4,EXOC4,FAM180A,KLF14,LRGUK,LUZP6,MKLN1,MTPN,NUP205,PLXNA4,PODXL,SLC13A4,SLC35B4,STRA8,TMEM140,TSGA13,WDR91"
TCGA.AF.3914.01A	7	130363945	138536906	388	0.0431	NEUTRAL	NA	37	"AGBL3,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,C7orf49,C7orf73,CALD1,CHCHD3,CHRM2,CNOT4,CREB3L2,DGKI,EXOC4,FAM180A,KIAA1549,KLF14,LOC100130880,LRGUK,LUZP6,MKLN1,MTPN,NUP205,PLXNA4,PODXL,PTN,SLC13A4,SLC35B4,STRA8,SVOPL,TMEM140,TMEM213,TRIM24,TSGA13,WDR91"
TCGA.AG.A00C.01A	7	130368373	131831232	35	-0.2283	NEUTRAL	NA	5	"KLF14,MKLN1,PLXNA4,PODXL,TSGA13"
TCGA.AA.A00F.01A	7	130417908	134880857	154	0.2495	NEUTRAL	NA	17	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,CALD1,CHCHD3,EXOC4,KLF14,LRGUK,MKLN1,PLXNA4,PODXL,SLC35B4,TMEM140,WDR91"
TCGA.AG.4009.01A	7	130561458	131195536	27	0.3382	NEUTRAL	NA	2	"MKLN1,PODXL"
TCGA.AA.A010.01A	7	130561458	135661715	287	0.3455	NEUTRAL	NA	24	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CHCHD3,CNOT4,EXOC4,FAM180A,LRGUK,LUZP6,MKLN1,MTPN,NUP205,PLXNA4,PODXL,SLC13A4,SLC35B4,STRA8,TMEM140,WDR91"
TCGA.CI.6621	7	130599863	136570311	2049	0.0075	NEUTRAL	NA	25	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CHCHD3,CHRM2,CNOT4,EXOC4,FAM180A,LRGUK,LUZP6,MKLN1,MTPN,NUP205,PLXNA4,PODXL,SLC13A4,SLC35B4,STRA8,TMEM140,WDR91"
TCGA.CK.5914.01A	7	131128190	131163368	7	0.1739	NEUTRAL	NA	1	MKLN1
TCGA.AA.A00D.01A	7	131172349	131195536	8	-0.4089	NEUTRAL	NA	2	"MKLN1,PODXL"
TCGA.AA.A00Q.01A	7	131172349	131195536	8	-0.0224	NEUTRAL	NA	2	"MKLN1,PODXL"
TCGA.D5.6931	7	131565849	159119219	8502	-0.0114	NEUTRAL	NA	192	Too-Many
TCGA.AA.A00D.01A	7	131817761	135433213	208	0.1316	NEUTRAL	NA	20	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CHCHD3,CNOT4,EXOC4,FAM180A,LRGUK,NUP205,PLXNA4,SLC13A4,SLC35B4,STRA8,TMEM140,WDR91"
TCGA.AA.3861.01A	7	131825320	138437322	363	0.2965	NEUTRAL	NA	31	"AGBL3,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,C7orf49,C7orf73,CALD1,CHCHD3,CHRM2,CNOT4,CREB3L2,DGKI,EXOC4,FAM180A,LOC100130880,LRGUK,LUZP6,MTPN,NUP205,PLXNA4,PTN,SLC13A4,SLC35B4,STRA8,SVOPL,TMEM140,TRIM24,WDR91"
TCGA.AG.A00C.01A	7	131832622	131859490	7	0.2327	NEUTRAL	NA	1	PLXNA4
TCGA.AG.A00C.01A	7	131864434	133059555	36	-0.1499	NEUTRAL	NA	3	"CHCHD3,EXOC4,PLXNA4"
TCGA.AG.4009.01A	7	131913056	134882707	121	0.358	NEUTRAL	NA	14	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,CALD1,CHCHD3,EXOC4,LRGUK,PLXNA4,SLC35B4,TMEM140,WDR91"
TCGA.AA.3941	7	132510607	133340193	194	0.3594	NEUTRAL	NA	2	"CHCHD3,EXOC4"
TCGA.AA.3850	7	132510607	133345634	196	-0.04175	NEUTRAL	NA	2	"CHCHD3,EXOC4"
TCGA.DM.A28F	7	132708864	159046883	8029	0.337	NEUTRAL	NA	191	Too-Many
TCGA.AA.3982	7	133064191	133522627	112	-0.1229	NEUTRAL	NA	1	EXOC4
TCGA.AA.3850	7	133352317	133453309	23	-0.41895	NEUTRAL	NA	1	EXOC4
TCGA.AA.3941	7	133353964	133449915	21	0.191	NEUTRAL	NA	1	EXOC4
TCGA.AA.3850	7	133463784	136019523	917	0.03085	NEUTRAL	NA	20	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CNOT4,EXOC4,FAM180A,LRGUK,LUZP6,MTPN,NUP205,SLC13A4,SLC35B4,STRA8,TMEM140,WDR91"
TCGA.AY.4070	7	133595315	133622223	14	-0.4626	NEUTRAL	NA	1	EXOC4
TCGA.AG.A00C.01A	7	133602309	134136287	44	-0.0789	NEUTRAL	NA	4	"AKR1B1,EXOC4,LRGUK,SLC35B4"
TCGA.AY.4070	7	133630417	135543508	683	0.2893	NEUTRAL	NA	18	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CNOT4,EXOC4,FAM180A,LRGUK,NUP205,SLC13A4,SLC35B4,STRA8,TMEM140,WDR91"
TCGA.AG.3598	7	133723220	159119219	7792	-0.0161	NEUTRAL	NA	190	Too-Many
TCGA.AG.A026	7	133770606	136150746	875	-0.0025	NEUTRAL	NA	19	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CNOT4,FAM180A,LRGUK,LUZP6,MTPN,NUP205,SLC13A4,SLC35B4,STRA8,TMEM140,WDR91"
TCGA.BM.6198	7	133874830	133967170	27	0.28535	NEUTRAL	NA	1	LRGUK
TCGA.AA.3941	7	133876929	133970749	32	0.0902	NEUTRAL	NA	1	LRGUK
TCGA.BM.6198	7	133967751	159119219	7748	-0.06945	NEUTRAL	NA	188	Too-Many
TCGA.G5.6235	7	133970749	141761873	2388	0.2117	NEUTRAL	NA	63	"ADCK2,AGBL3,AGK,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,BRAF,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CHRM2,CLEC2L,CLEC5A,CNOT4,CREB3L2,DENND2A,DGKI,FAM180A,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,LUZP6,MGAM,MKRN1,MRPS33,MTPN,NDUFB2,NUP205,OR9A4,PARP12,PRSS37,PTN,RAB19,SLC13A4,SLC35B4,SLC37A3,SSBP1,STRA8,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM140,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WDR91,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AF.4110	7	133978166	159119219	7737	0.2035	NEUTRAL	NA	188	Too-Many
TCGA.DC.4745	7	133979224	154956930	6408	0.2924	NEUTRAL	NA	171	Too-Many
TCGA.CK.5914.01A	7	133981082	134134423	16	-0.0326	NEUTRAL	NA	2	"AKR1B1,SLC35B4"
TCGA.AG.3909.01A	7	133981082	134136287	17	0.2051	NEUTRAL	NA	2	"AKR1B1,SLC35B4"
TCGA.AA.A00N.01A	7	133984226	134143681	18	-0.3949	NEUTRAL	NA	2	"AKR1B1,SLC35B4"
TCGA.AA.A00Q.01A	7	133991377	134212595	14	-0.1262	NEUTRAL	NA	3	"AKR1B1,AKR1B10,SLC35B4"
TCGA.AG.A025.01A	7	134136287	140219379	423	-0.089	NEUTRAL	NA	45	"AGBL3,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CHRM2,CLEC2L,CNOT4,CREB3L2,DENND2A,DGKI,FAM180A,HIPK2,KDM7A,KIAA1549,KLRG2,LOC100130880,LUC7L2,LUZP6,MKRN1,MTPN,NUP205,PARP12,PTN,RAB19,SLC13A4,SLC37A3,STRA8,SVOPL,TBXAS1,TMEM140,TMEM213,TRIM24,TTC26,UBN2,WDR91,ZC3HAV1,ZC3HAV1L"
TCGA.AG.A00C.01A	7	134212595	134225784	10	-0.3582	NEUTRAL	NA	1	AKR1B10
TCGA.CM.4752	7	134231639	146326864	3411	0.338	NEUTRAL	NA	105	Too-Many
TCGA.AG.A00C.01A	7	134260121	134896083	41	-0.1128	NEUTRAL	NA	7	"AGBL3,AKR1B15,BPGM,C7orf49,CALD1,TMEM140,WDR91"
TCGA.AA.3941	7	134298547	134328369	18	-0.0794	NEUTRAL	NA	0	None
TCGA.AG.3906.01A	7	134346248	139094254	312	-0.0303	NEUTRAL	NA	32	"AGBL3,AKR1D1,ATP6V0A4,BPGM,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CHRM2,CNOT4,CREB3L2,DGKI,FAM180A,KIAA1549,LOC100130880,LUC7L2,LUZP6,MTPN,NUP205,PTN,SLC13A4,STRA8,SVOPL,TMEM140,TMEM213,TRIM24,TTC26,UBN2,WDR91,ZC3HAV1,ZC3HAV1L"
TCGA.AA.A02H.01A	7	134363557	134929967	38	0.2932	NEUTRAL	NA	7	"AGBL3,BPGM,C7orf49,CALD1,STRA8,TMEM140,WDR91"
TCGA.AA.3982	7	134489405	137497957	1008	0.0024	NEUTRAL	NA	16	"AGBL3,C7orf49,C7orf73,CALD1,CHRM2,CNOT4,DGKI,FAM180A,LUZP6,MTPN,NUP205,PTN,SLC13A4,STRA8,TMEM140,WDR91"
TCGA.AA.3941	7	134490265	134540105	38	-0.1888	NEUTRAL	NA	1	CALD1
TCGA.CK.5914.01A	7	134617717	134678207	13	-0.0654	NEUTRAL	NA	2	"AGBL3,CALD1"
TCGA.AA.3941	7	134749005	134841934	18	0.1842	NEUTRAL	NA	3	"AGBL3,C7orf49,TMEM140"
TCGA.AA.A00Q.01A	7	134819576	134936483	27	0.0825	NEUTRAL	NA	5	"AGBL3,C7orf49,STRA8,TMEM140,WDR91"
TCGA.D5.6539	7	134830058	159119219	7377	0.2595	NEUTRAL	NA	181	Too-Many
TCGA.AA.A00N.01A	7	134849144	134889000	14	-0.2698	NEUTRAL	NA	3	"C7orf49,TMEM140,WDR91"
TCGA.AG.3909.01A	7	134849144	134943136	27	-0.4017	NEUTRAL	NA	4	"C7orf49,STRA8,TMEM140,WDR91"
TCGA.AZ.4684.01A	7	134849144	135047586	29	0.2916	NEUTRAL	NA	5	"C7orf49,CNOT4,STRA8,TMEM140,WDR91"
TCGA.CK.5914.01A	7	134852434	134939814	25	-0.35	NEUTRAL	NA	3	"C7orf49,STRA8,WDR91"
TCGA.AG.3891.01A	7	134893506	134943136	12	0.2245	NEUTRAL	NA	2	"STRA8,WDR91"
TCGA.AA.A01K.01A	7	134916660	150931071	964	0.119	NEUTRAL	NA	147	Too-Many
TCGA.NH.A5IV	7	134924787	159119219	7335	0.0173	NEUTRAL	NA	178	Too-Many
TCGA.AG.3891.01A	7	135047586	135242607	12	-0.3338	NEUTRAL	NA	1	CNOT4
TCGA.AG.A00C.01A	7	135047586	135323258	48	-0.1559	NEUTRAL	NA	2	"CNOT4,NUP205"
TCGA.AA.A00F.01A	7	135078653	135315053	35	0.284	NEUTRAL	NA	2	"CNOT4,NUP205"
TCGA.DM.A28M.01A	7	135099870	158936978	1576	0.136	NEUTRAL	NA	177	Too-Many
TCGA.AG.3891.01A	7	135255831	135636246	62	-0.0489	NEUTRAL	NA	6	"C7orf73,FAM180A,LUZP6,MTPN,NUP205,SLC13A4"
TCGA.AA.A02H.01A	7	135298860	135323258	15	0.2525	NEUTRAL	NA	1	NUP205
TCGA.CK.5914.01A	7	135298860	135333105	20	-0.0247	NEUTRAL	NA	1	NUP205
TCGA.AG.A00C.01A	7	135327892	135390275	17	0.2051	NEUTRAL	NA	3	"C7orf73,NUP205,SLC13A4"
TCGA.AA.A02H.01A	7	135377024	135661715	17	0.1781	NEUTRAL	NA	4	"FAM180A,LUZP6,MTPN,SLC13A4"
TCGA.AA.A00Q.01A	7	135378833	136939564	25	0.0607	NEUTRAL	NA	6	"CHRM2,FAM180A,LUZP6,MTPN,PTN,SLC13A4"
TCGA.AG.A00C.01A	7	135390839	137308188	45	-0.2831	NEUTRAL	NA	7	"CHRM2,DGKI,FAM180A,LUZP6,MTPN,PTN,SLC13A4"
TCGA.DY.A1DC	7	135414745	135440677	6	-0.4778	NEUTRAL	NA	1	FAM180A
TCGA.AA.3950	7	135493077	159119219	7164	0.2772	NEUTRAL	NA	172	Too-Many
TCGA.AA.3941	7	135522388	135836516	101	0.3439	NEUTRAL	NA	2	"LUZP6,MTPN"
TCGA.AA.A00D.01A	7	135611995	137761213	58	-0.1626	NEUTRAL	NA	8	"AKR1D1,CHRM2,CREB3L2,DGKI,LOC100130880,LUZP6,MTPN,PTN"
TCGA.AA.A00A.01A	7	135636246	137080293	12	-0.4698	NEUTRAL	NA	5	"CHRM2,DGKI,LUZP6,MTPN,PTN"
TCGA.AG.3891.01A	7	135661715	137330149	37	-0.406	NEUTRAL	NA	5	"CHRM2,DGKI,LUZP6,MTPN,PTN"
TCGA.AG.3591	7	135684382	149496052	3988	0.1707	NEUTRAL	NA	105	Too-Many
TCGA.AA.3844	7	135719008	137540269	613	0.085	NEUTRAL	NA	3	"CHRM2,DGKI,PTN"
TCGA.AA.3811	7	135846936	137540269	566	-0.267	NEUTRAL	NA	3	"CHRM2,DGKI,PTN"
TCGA.AA.3941	7	136051593	137227666	377	-0.4095	NEUTRAL	NA	3	"CHRM2,DGKI,PTN"
TCGA.A6.2682	7	136120118	159119219	6831	0.1403	NEUTRAL	NA	170	Too-Many
TCGA.AG.A026	7	136151224	136836441	198	-0.4731	NEUTRAL	NA	1	CHRM2
TCGA.AG.A01W.01A	7	136586468	141408786	432	0.2359	NEUTRAL	NA	36	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CHRM2,CLEC2L,CREB3L2,DENND2A,DGKI,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MKRN1,MRPS33,NDUFB2,PARP12,PTN,RAB19,SLC37A3,SVOPL,TBXAS1,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.3867	7	136800832	137578896	276	0.0383	NEUTRAL	NA	3	"CREB3L2,DGKI,PTN"
TCGA.AG.A026	7	136849385	141713201	1354	-0.0064	NEUTRAL	NA	44	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CLEC2L,CLEC5A,CREB3L2,DENND2A,DGKI,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MKRN1,MRPS33,NDUFB2,OR9A4,PARP12,PRSS37,PTN,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.CI.6621	7	136914814	137050826	61	0.0013	NEUTRAL	NA	1	PTN
TCGA.CI.6621	7	137050949	138571709	480	0.3693	NEUTRAL	NA	9	"AKR1D1,ATP6V0A4,CREB3L2,DGKI,KIAA1549,LOC100130880,SVOPL,TMEM213,TRIM24"
TCGA.AA.A010.01A	7	137080293	138269460	71	0.2997	NEUTRAL	NA	5	"AKR1D1,CREB3L2,DGKI,LOC100130880,TRIM24"
TCGA.AA.A00A.01A	7	137082055	138310653	74	0.0271	NEUTRAL	NA	6	"AKR1D1,CREB3L2,DGKI,LOC100130880,SVOPL,TRIM24"
TCGA.AA.A00L.01A	7	137082055	150883427	700	0.025	NEUTRAL	NA	134	Too-Many
TCGA.AA.3941	7	137234682	137414395	61	0.3357	NEUTRAL	NA	1	DGKI
TCGA.AZ.4684.01A	7	137271802	137597691	22	0.248	NEUTRAL	NA	2	"CREB3L2,DGKI"
TCGA.AY.4070	7	137286849	147278059	2719	0.3026	NEUTRAL	NA	88	"ADCK2,AGK,AKR1D1,ARHGEF35,ARHGEF5,ATP6V0A4,BRAF,C7orf34,C7orf55,C7orf55-LUC7L2,CASP2,CLCN1,CLEC2L,CLEC5A,CNTNAP2,CREB3L2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,DENND2A,DGKI,EPHA1,EPHB6,FAM131B,GSTK1,HIPK2,KDM7A,KEL,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PARP12,PIP,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TBXAS1,TCAF1,TCAF2,TMEM139,TMEM178B,TMEM213,TPK1,TRIM24,TRPV5,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L,ZYX"
TCGA.AA.A02H.01A	7	137304523	140255383	249	0.2266	NEUTRAL	NA	26	"AKR1D1,ATP6V0A4,C7orf55,C7orf55-LUC7L2,CLEC2L,CREB3L2,DENND2A,DGKI,HIPK2,KDM7A,KIAA1549,KLRG2,LOC100130880,LUC7L2,MKRN1,PARP12,RAB19,SLC37A3,SVOPL,TBXAS1,TMEM213,TRIM24,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.AG.A00C.01A	7	137330149	138455846	77	-0.0432	NEUTRAL	NA	7	"AKR1D1,ATP6V0A4,CREB3L2,DGKI,LOC100130880,SVOPL,TRIM24"
TCGA.AG.3891.01A	7	137339419	140035011	226	-0.0154	NEUTRAL	NA	23	"AKR1D1,ATP6V0A4,C7orf55,C7orf55-LUC7L2,CLEC2L,CREB3L2,DGKI,HIPK2,KDM7A,KIAA1549,KLRG2,LOC100130880,LUC7L2,PARP12,SLC37A3,SVOPL,TBXAS1,TMEM213,TRIM24,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.AF.6672	7	137380918	144838687	1938	-0.002	NEUTRAL	NA	87	"ADCK2,AGK,AKR1D1,ARHGEF35,ARHGEF5,ATP6V0A4,BRAF,C7orf34,C7orf55,C7orf55-LUC7L2,CASP2,CLCN1,CLEC2L,CLEC5A,CREB3L2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,DENND2A,DGKI,EPHA1,EPHB6,FAM131B,GSTK1,HIPK2,KDM7A,KEL,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PARP12,PIP,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TBXAS1,TCAF1,TCAF2,TMEM139,TMEM178B,TMEM213,TPK1,TRIM24,TRPV5,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L,ZYX"
TCGA.AA.3850	7	137431421	143155575	1549	0.23805	NEUTRAL	NA	65	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf34,C7orf55,C7orf55-LUC7L2,CASP2,CLCN1,CLEC2L,CLEC5A,CREB3L2,DENND2A,DGKI,EPHA1,EPHB6,FAM131B,GSTK1,HIPK2,KDM7A,KEL,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,OR6V1,OR9A2,OR9A4,PARP12,PIP,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R5,TAS2R60,TBXAS1,TMEM139,TMEM178B,TMEM213,TRIM24,TRPV5,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L,ZYX"
TCGA.AA.3941	7	137433787	137500363	25	0.1512	NEUTRAL	NA	1	DGKI
TCGA.AA.3982	7	137500363	143137615	1518	0.3727	NEUTRAL	NA	64	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf34,C7orf55,C7orf55-LUC7L2,CASP2,CLCN1,CLEC2L,CLEC5A,CREB3L2,DENND2A,DGKI,EPHA1,EPHB6,FAM131B,GSTK1,HIPK2,KDM7A,KEL,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,OR6V1,OR9A2,OR9A4,PARP12,PIP,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R5,TBXAS1,TMEM139,TMEM178B,TMEM213,TRIM24,TRPV5,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L,ZYX"
TCGA.AA.3811	7	137546550	143155575	1516	0.207	NEUTRAL	NA	64	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf34,C7orf55,C7orf55-LUC7L2,CASP2,CLCN1,CLEC2L,CLEC5A,CREB3L2,DENND2A,EPHA1,EPHB6,FAM131B,GSTK1,HIPK2,KDM7A,KEL,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,OR6V1,OR9A2,OR9A4,PARP12,PIP,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R5,TAS2R60,TBXAS1,TMEM139,TMEM178B,TMEM213,TRIM24,TRPV5,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L,ZYX"
TCGA.AA.3867	7	137579092	137812368	83	0.3491	NEUTRAL	NA	3	"AKR1D1,CREB3L2,LOC100130880"
TCGA.F5.6465	7	137699625	159119219	6424	-0.0186	NEUTRAL	NA	165	Too-Many
TCGA.AA.A00D.01A	7	137773308	142574129	265	0.2158	NEUTRAL	NA	46	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CLEC2L,CLEC5A,DENND2A,EPHB6,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,OR9A4,PARP12,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM178B,TMEM213,TRIM24,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.A00N.01A	7	137782598	138363651	40	0.156	NEUTRAL	NA	3	"AKR1D1,SVOPL,TRIM24"
TCGA.AA.A01Z	7	137816731	137817624	3	-0.454	NEUTRAL	NA	0	None
TCGA.AA.3977	7	137827450	146884782	2339	0.0433	NEUTRAL	NA	84	"ADCK2,AGK,ARHGEF35,ARHGEF5,ATP6V0A4,BRAF,C7orf34,C7orf55,C7orf55-LUC7L2,CASP2,CLCN1,CLEC2L,CLEC5A,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,DENND2A,EPHA1,EPHB6,FAM131B,GSTK1,HIPK2,KDM7A,KEL,KIAA1147,KIAA1549,KLRG2,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PARP12,PIP,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TBXAS1,TCAF1,TCAF2,TMEM139,TMEM178B,TMEM213,TPK1,TRIM24,TRPV5,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L,ZYX"
TCGA.AA.3867	7	137827450	159119219	6371	0.2138	NEUTRAL	NA	164	Too-Many
TCGA.AA.3488	7	137994754	138083883	26	-0.1468	NEUTRAL	NA	0	None
TCGA.AA.3488	7	138084512	159119219	6305	0.3394	NEUTRAL	NA	164	Too-Many
TCGA.CK.5914.01A	7	138329423	138363128	7	-0.3118	NEUTRAL	NA	1	SVOPL
TCGA.AA.A00A.01A	7	138437322	139719763	75	-0.0152	NEUTRAL	NA	14	"ATP6V0A4,C7orf55,C7orf55-LUC7L2,CLEC2L,HIPK2,KIAA1549,KLRG2,LUC7L2,TBXAS1,TMEM213,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.3861.01A	7	138440384	141757961	323	-0.0536	NEUTRAL	NA	37	"ADCK2,AGK,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CLEC2L,CLEC5A,DENND2A,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LUC7L2,MGAM,MKRN1,MRPS33,NDUFB2,OR9A4,PARP12,PRSS37,RAB19,SLC37A3,SSBP1,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM178B,TMEM213,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AG.A00C.01A	7	138482789	138554234	10	-0.4346	NEUTRAL	NA	3	"ATP6V0A4,KIAA1549,TMEM213"
TCGA.DM.A1HB	7	138489882	159119219	6059	0.0278	NEUTRAL	NA	161	Too-Many
TCGA.AG.A00C.01A	7	138555883	139715476	106	-0.0158	NEUTRAL	NA	12	"C7orf55,C7orf55-LUC7L2,CLEC2L,HIPK2,KIAA1549,KLRG2,LUC7L2,TBXAS1,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.AF.3914.01A	7	138564246	139733986	115	0.1116	NEUTRAL	NA	13	"C7orf55,C7orf55-LUC7L2,CLEC2L,HIPK2,KIAA1549,KLRG2,LUC7L2,PARP12,TBXAS1,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.CI.6621	7	138573273	139112047	125	0.0428	NEUTRAL	NA	8	"C7orf55,C7orf55-LUC7L2,KIAA1549,LUC7L2,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.CK.5914.01A	7	138601876	138739908	9	-0.503	NEUTRAL	NA	3	"KIAA1549,ZC3HAV1,ZC3HAV1L"
TCGA.AG.4009.01A	7	138711249	138822551	19	0.0708	NEUTRAL	NA	3	"TTC26,ZC3HAV1,ZC3HAV1L"
TCGA.AA.A010.01A	7	138711249	139728354	108	0.3441	NEUTRAL	NA	12	"C7orf55,C7orf55-LUC7L2,CLEC2L,HIPK2,KLRG2,LUC7L2,PARP12,TBXAS1,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.CK.5914.01A	7	138745748	138853985	21	0.2492	NEUTRAL	NA	2	"TTC26,ZC3HAV1"
TCGA.AA.A00N.01A	7	138760982	139026093	44	0.3562	NEUTRAL	NA	6	"C7orf55,C7orf55-LUC7L2,LUC7L2,TTC26,UBN2,ZC3HAV1"
TCGA.CK.5914.01A	7	138862907	138936655	9	-0.4955	NEUTRAL	NA	2	"TTC26,UBN2"
TCGA.AG.4009.01A	7	138921710	138963984	12	0.0891	NEUTRAL	NA	1	UBN2
TCGA.AA.A00N.01A	7	139030215	139268542	26	-0.2248	NEUTRAL	NA	6	"C7orf55,C7orf55-LUC7L2,CLEC2L,HIPK2,KLRG2,LUC7L2"
TCGA.AG.3906.01A	7	139097211	139298991	15	-0.2518	NEUTRAL	NA	5	"C7orf55-LUC7L2,CLEC2L,HIPK2,KLRG2,LUC7L2"
TCGA.CI.6621	7	139112175	139523857	102	0.3468	NEUTRAL	NA	4	"CLEC2L,HIPK2,KLRG2,TBXAS1"
TCGA.CK.5914.01A	7	139138306	139285116	14	0.3332	NEUTRAL	NA	3	"CLEC2L,HIPK2,KLRG2"
TCGA.AG.3906.01A	7	139305120	140045621	53	0.059	NEUTRAL	NA	5	"HIPK2,KDM7A,PARP12,SLC37A3,TBXAS1"
TCGA.CI.6621	7	139528661	139975027	121	0.0106	NEUTRAL	NA	3	"KDM7A,PARP12,TBXAS1"
TCGA.AG.3611.01A	7	139706839	139757668	15	0.0995	NEUTRAL	NA	2	"PARP12,TBXAS1"
TCGA.AG.3909.01A	7	139706839	140171701	58	-0.0291	NEUTRAL	NA	6	"KDM7A,MKRN1,PARP12,RAB19,SLC37A3,TBXAS1"
TCGA.CK.5914.01A	7	139706839	140259456	71	0.0459	NEUTRAL	NA	7	"DENND2A,KDM7A,MKRN1,PARP12,RAB19,SLC37A3,TBXAS1"
TCGA.AG.A00C.01A	7	139717444	140219379	58	0.3535	NEUTRAL	NA	7	"DENND2A,KDM7A,MKRN1,PARP12,RAB19,SLC37A3,TBXAS1"
TCGA.AA.A00A.01A	7	139724343	140155542	32	0.3131	NEUTRAL	NA	5	"KDM7A,MKRN1,PARP12,RAB19,SLC37A3"
TCGA.AF.3914.01A	7	139737467	140155542	45	-0.3198	NEUTRAL	NA	5	"KDM7A,MKRN1,PARP12,RAB19,SLC37A3"
TCGA.AG.4009.01A	7	139737467	140171701	49	-0.1718	NEUTRAL	NA	5	"KDM7A,MKRN1,PARP12,RAB19,SLC37A3"
TCGA.AA.A010.01A	7	139801703	139838871	11	0.2252	NEUTRAL	NA	1	KDM7A
TCGA.AA.A02K.01A	7	139876508	140037056	3	-0.0366	NEUTRAL	NA	2	"KDM7A,SLC37A3"
TCGA.AG.3891.01A	7	140037055	140390497	48	0.2522	NEUTRAL	NA	5	"ADCK2,DENND2A,MKRN1,RAB19,SLC37A3"
TCGA.AA.A010.01A	7	140107408	140171701	11	-0.3295	NEUTRAL	NA	2	"MKRN1,RAB19"
TCGA.AG.3906.01A	7	140154276	140390497	30	0.2886	NEUTRAL	NA	3	"ADCK2,DENND2A,MKRN1"
TCGA.AF.3914.01A	7	140156401	140301153	21	0.2332	NEUTRAL	NA	2	"DENND2A,MKRN1"
TCGA.AA.A00A.01A	7	140156401	149191031	356	0.0217	NEUTRAL	NA	76	"ADCK2,AGK,ARHGEF35,ARHGEF5,BRAF,C7orf33,C7orf34,CASP2,CLCN1,CLEC5A,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,DENND2A,EPHA1,EPHB6,EZH2,FAM131B,GSTK1,KEL,KIAA1147,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PDIA4,PIP,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TCAF1,TCAF2,TMEM139,TMEM178B,TPK1,TRPV5,TRPV6,WEE2,ZNF212,ZNF282,ZNF398,ZNF425,ZNF746,ZNF777,ZNF783,ZNF786,ZYX"
TCGA.CI.6621	7	140218463	155308695	4558	0.027	NEUTRAL	NA	129	Too-Many
TCGA.AG.A00C.01A	7	140221603	148544227	402	-0.0761	NEUTRAL	NA	66	"ADCK2,AGK,ARHGEF35,ARHGEF5,BRAF,C7orf33,C7orf34,CASP2,CLCN1,CLEC5A,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,DENND2A,EPHA1,EPHB6,EZH2,FAM131B,GSTK1,KEL,KIAA1147,MGAM,MGAM2,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PIP,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TCAF1,TCAF2,TMEM139,TMEM178B,TPK1,TRPV5,TRPV6,WEE2,ZYX"
TCGA.AG.A025.01A	7	140244367	158935086	1042	-0.1914	NEUTRAL	NA	143	Too-Many
TCGA.A6.5665	7	140246893	147617840	2021	0.0715	NEUTRAL	NA	63	"ADCK2,AGK,ARHGEF35,ARHGEF5,BRAF,C7orf34,CASP2,CLCN1,CLEC5A,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,DENND2A,EPHA1,EPHB6,FAM131B,GSTK1,KEL,KIAA1147,MGAM,MGAM2,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PIP,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TCAF1,TCAF2,TMEM139,TMEM178B,TPK1,TRPV5,TRPV6,WEE2,ZYX"
TCGA.AA.A02H.01A	7	140266844	141255220	37	0.3217	NEUTRAL	NA	7	"ADCK2,AGK,BRAF,DENND2A,MRPS33,NDUFB2,TMEM178B"
TCGA.AG.A023.01A	7	140266844	141635577	85	0.0365	NEUTRAL	NA	16	"ADCK2,AGK,BRAF,CLEC5A,DENND2A,KIAA1147,MRPS33,NDUFB2,OR9A4,PRSS37,SSBP1,TAS2R3,TAS2R4,TAS2R5,TMEM178B,WEE2"
TCGA.AA.3939.01A	7	140273570	158936978	1161	0.0208	NEUTRAL	NA	143	Too-Many
TCGA.AG.4009.01A	7	140301153	140380792	5	-0.4898	NEUTRAL	NA	2	"ADCK2,DENND2A"
TCGA.A6.2672	7	140338652	147617840	2005	0.0836	NEUTRAL	NA	62	"ADCK2,AGK,ARHGEF35,ARHGEF5,BRAF,C7orf34,CASP2,CLCN1,CLEC5A,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,EPHA1,EPHB6,FAM131B,GSTK1,KEL,KIAA1147,MGAM,MGAM2,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PIP,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TCAF1,TCAF2,TMEM139,TMEM178B,TPK1,TRPV5,TRPV6,WEE2,ZYX"
TCGA.AG.3909.01A	7	140373093	140482774	19	-0.1668	NEUTRAL	NA	3	"ADCK2,BRAF,NDUFB2"
TCGA.CK.5914.01A	7	140373093	140487265	21	-0.1285	NEUTRAL	NA	3	"ADCK2,BRAF,NDUFB2"
TCGA.AF.3914.01A	7	140378908	142988585	215	0.0412	NEUTRAL	NA	34	"ADCK2,AGK,BRAF,C7orf34,CASP2,CLEC5A,EPHB6,GSTK1,KEL,KIAA1147,MGAM,MGAM2,MRPS33,MTRNR2L6,NDUFB2,OR6V1,OR9A2,OR9A4,PIP,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R5,TMEM139,TMEM178B,TRPV5,TRPV6,WEE2"
TCGA.AG.4009.01A	7	140386752	140500110	18	0.0077	NEUTRAL	NA	3	"ADCK2,BRAF,NDUFB2"
TCGA.AA.A010.01A	7	140394423	141373815	43	0.1196	NEUTRAL	NA	7	"ADCK2,AGK,BRAF,KIAA1147,MRPS33,NDUFB2,TMEM178B"
TCGA.AG.3906.01A	7	140394423	141385241	43	-0.1704	NEUTRAL	NA	7	"ADCK2,AGK,BRAF,KIAA1147,MRPS33,NDUFB2,TMEM178B"
TCGA.AG.3891.01A	7	140394423	148768907	400	-0.1263	NEUTRAL	NA	67	"ADCK2,AGK,ARHGEF35,ARHGEF5,BRAF,C7orf33,C7orf34,CASP2,CLCN1,CLEC5A,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,EPHB6,EZH2,FAM131B,GSTK1,KEL,KIAA1147,MGAM,MGAM2,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PDIA4,PIP,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TCAF1,TCAF2,TMEM139,TMEM178B,TPK1,TRPV5,TRPV6,WEE2,ZNF786,ZYX"
TCGA.AA.3509.01A	7	140487265	148457398	349	0.09	NEUTRAL	NA	62	"AGK,ARHGEF35,ARHGEF5,BRAF,C7orf33,C7orf34,CASP2,CLCN1,CLEC5A,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,EPHB6,FAM131B,GSTK1,KEL,KIAA1147,MGAM,MGAM2,MRPS33,MTRNR2L6,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PIP,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TCAF1,TCAF2,TMEM139,TMEM178B,TPK1,TRPV5,TRPV6,WEE2,ZYX"
TCGA.CK.5914.01A	7	140494059	141635577	60	0.3422	NEUTRAL	NA	13	"AGK,BRAF,CLEC5A,KIAA1147,MRPS33,OR9A4,PRSS37,SSBP1,TAS2R3,TAS2R4,TAS2R5,TMEM178B,WEE2"
TCGA.AG.4009.01A	7	140501195	141366036	26	0.3772	NEUTRAL	NA	5	"AGK,BRAF,KIAA1147,MRPS33,TMEM178B"
TCGA.CK.4947	7	140970381	157498767	5113	-0.0809	NEUTRAL	NA	134	Too-Many
TCGA.AA.A02K.01A	7	141292877	142626512	203	0.2286	NEUTRAL	NA	19	"AGK,CLEC5A,EPHB6,KIAA1147,MGAM,MGAM2,MTRNR2L6,OR9A4,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TRPV5,TRPV6,WEE2"
TCGA.AG.4009.01A	7	141373815	141424775	11	-0.0705	NEUTRAL	NA	2	"KIAA1147,WEE2"
TCGA.AG.3906.01A	7	141422885	143013254	169	0.038	NEUTRAL	NA	28	"C7orf34,CASP2,CLCN1,CLEC5A,EPHB6,GSTK1,KEL,MGAM,MGAM2,MTRNR2L6,OR6V1,OR9A2,OR9A4,PIP,PRSS1,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R5,TMEM139,TRPV5,TRPV6,WEE2"
TCGA.AA.A00N.01A	7	141424775	141450056	10	0.3164	NEUTRAL	NA	2	"SSBP1,WEE2"
TCGA.AG.4009.01A	7	141427057	141951990	71	0.2597	NEUTRAL	NA	12	"CLEC5A,MGAM,MGAM2,OR9A4,PRSS37,PRSS58,SSBP1,TAS2R3,TAS2R38,TAS2R4,TAS2R5,WEE2"
TCGA.AG.A01W.01A	7	141448825	141647264	8	0.0513	NEUTRAL	NA	7	"CLEC5A,OR9A4,PRSS37,SSBP1,TAS2R3,TAS2R4,TAS2R5"
TCGA.AG.A01L.01A	7	141478247	141539096	6	-0.1634	NEUTRAL	NA	3	"PRSS37,TAS2R4,TAS2R5"
TCGA.AG.A01L.01A	7	141540746	141672477	9	0.3308	NEUTRAL	NA	4	"CLEC5A,OR9A4,PRSS37,TAS2R38"
TCGA.AA.A010.01A	7	141635577	141757961	34	-0.3788	NEUTRAL	NA	3	"CLEC5A,MGAM,TAS2R38"
TCGA.AG.A01W.01A	7	141654831	141802367	13	0.3068	NEUTRAL	NA	2	"MGAM,TAS2R38"
TCGA.AG.A01L.01A	7	141705314	141735921	15	-0.0301	NEUTRAL	NA	1	MGAM
TCGA.AA.3844	7	141717304	141994858	88	0.3574	NEUTRAL	NA	3	"MGAM,MGAM2,PRSS58"
TCGA.AA.A02H.01A	7	141747539	141756602	9	0.0726	NEUTRAL	NA	1	MGAM
TCGA.AG.A01L.01A	7	141747539	141957407	30	0.033	NEUTRAL	NA	3	"MGAM,MGAM2,PRSS58"
TCGA.AG.A016.01A	7	141749958	141765083	16	-0.1265	NEUTRAL	NA	1	MGAM
TCGA.AA.A010.01A	7	141759220	141805561	16	0.3638	NEUTRAL	NA	1	MGAM
TCGA.EI.6511	7	141770059	141799116	5	-0.3735	NEUTRAL	NA	1	MGAM
TCGA.AG.A016.01A	7	141794349	142571193	34	0.3389	NEUTRAL	NA	7	"EPHB6,MGAM,MGAM2,MTRNR2L6,PRSS1,PRSS58,TRPV6"
TCGA.AA.A01Z	7	141797563	141799116	2	0.3456	NEUTRAL	NA	1	MGAM
TCGA.AG.A023.01A	7	141799381	158935086	851	-0.1508	NEUTRAL	NA	126	Too-Many
TCGA.CK.5914.01A	7	141802355	141957407	7	0.2468	NEUTRAL	NA	3	"MGAM,MGAM2,PRSS58"
TCGA.G5.6235	7	141808572	159119219	5350	0.1963	NEUTRAL	NA	125	Too-Many
TCGA.AG.A01W.01A	7	141819410	142007512	16	-0.0472	NEUTRAL	NA	2	"MGAM2,PRSS58"
TCGA.AA.A010.01A	7	141951990	141957407	4	-0.391	NEUTRAL	NA	1	PRSS58
TCGA.AA.3968	7	142044928	142267509	82	0.3768	NEUTRAL	NA	0	None
TCGA.DY.A1DC	7	142157635	142176072	8	-0.2487	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	7	142160681	142361393	65	-0.0364	NEUTRAL	NA	0	None
TCGA.AA.3675	7	142338468	142508375	45	0.3304	NEUTRAL	NA	2	"MTRNR2L6,PRSS1"
TCGA.AA.3844	7	142374071	142400844	7	0.1138	NEUTRAL	NA	1	MTRNR2L6
TCGA.AA.3973	7	142374082	142410879	12	-0.134	NEUTRAL	NA	1	MTRNR2L6
TCGA.AG.A01W.01A	7	142433450	142542362	4	0.0829	NEUTRAL	NA	1	PRSS1
TCGA.AA.3695	7	142500466	149636503	2049	0.2819	NEUTRAL	NA	58	"ARHGEF35,ARHGEF5,ATP6V0E2,C7orf33,C7orf34,CASP2,CLCN1,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,EPHB6,EZH2,FAM131B,GSTK1,KEL,KRBA1,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,PDIA4,PIP,SSPO,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM139,TPK1,TRPV5,TRPV6,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF777,ZNF783,ZNF786,ZNF862,ZYX"
TCGA.AA.3688	7	142500466	157755678	4758	-0.0076	NEUTRAL	NA	117	Too-Many
TCGA.AA.3666	7	142500466	159119219	5139	0.3726	NEUTRAL	NA	121	Too-Many
TCGA.AA.3860	7	142500466	159119219	5138	0.0032	NEUTRAL	NA	121	Too-Many
TCGA.AA.3968	7	142502655	159119219	5130	0.3003	NEUTRAL	NA	121	Too-Many
TCGA.AA.3973	7	142502655	159119219	5131	0.0513	NEUTRAL	NA	121	Too-Many
TCGA.AG.3901	7	142502655	159119219	5121	0.0081	NEUTRAL	NA	121	Too-Many
TCGA.AA.3692	7	142505153	159119219	5132	0.1307	NEUTRAL	NA	121	Too-Many
TCGA.AA.3858	7	142507501	159119219	5134	0.0779	NEUTRAL	NA	121	Too-Many
TCGA.AA.3684	7	142508375	159119219	5132	0.1977	NEUTRAL	NA	121	Too-Many
TCGA.AA.3675	7	142508606	159119219	5132	-0.0128	NEUTRAL	NA	121	Too-Many
TCGA.CK.5914.01A	7	142560945	142573283	20	0.1574	NEUTRAL	NA	2	"EPHB6,TRPV6"
TCGA.AA.A00N.01A	7	142560945	142575363	24	-0.1985	NEUTRAL	NA	2	"EPHB6,TRPV6"
TCGA.AG.A01L.01A	7	142560945	142651303	51	0.0571	NEUTRAL	NA	5	"C7orf34,EPHB6,KEL,TRPV5,TRPV6"
TCGA.AA.A00Q.01A	7	142560945	143104637	134	0.1487	NEUTRAL	NA	17	"C7orf34,CASP2,CLCN1,EPHA1,EPHB6,FAM131B,GSTK1,KEL,OR6V1,OR9A2,PIP,TAS2R39,TAS2R40,TMEM139,TRPV5,TRPV6,ZYX"
TCGA.AA.A02H.01A	7	142561354	143091236	117	0.016	NEUTRAL	NA	17	"C7orf34,CASP2,CLCN1,EPHA1,EPHB6,FAM131B,GSTK1,KEL,OR6V1,OR9A2,PIP,TAS2R39,TAS2R40,TMEM139,TRPV5,TRPV6,ZYX"
TCGA.AG.3611.01A	7	142561354	150656608	329	0.3256	NEUTRAL	NA	76	"ACTR3C,AOC1,ARHGEF35,ARHGEF5,ATP6V0E2,C7orf33,C7orf34,CASP2,CLCN1,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,EPHB6,EZH2,FAM131B,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,GSTK1,KCNH2,KEL,KRBA1,LRRC61,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,PDIA4,PIP,RARRES2,REPIN1,SSPO,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM139,TMEM176A,TMEM176B,TPK1,TRPV5,TRPV6,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862,ZYX"
TCGA.AG.A016.01A	7	142571774	142659195	41	-0.057	NEUTRAL	NA	4	"C7orf34,KEL,TRPV5,TRPV6"
TCGA.AA.A00D.01A	7	142574445	142659195	36	-0.1876	NEUTRAL	NA	4	"C7orf34,KEL,TRPV5,TRPV6"
TCGA.AA.A02K.01A	7	142627104	142641684	11	-0.0227	NEUTRAL	NA	3	"C7orf34,KEL,TRPV5"
TCGA.AA.A02K.01A	7	142643258	149255825	263	0.3429	NEUTRAL	NA	49	"ARHGEF35,ARHGEF5,C7orf33,CASP2,CLCN1,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,EZH2,FAM131B,GSTK1,KEL,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,PDIA4,PIP,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM139,TPK1,ZNF212,ZNF282,ZNF398,ZNF425,ZNF746,ZNF777,ZNF783,ZNF786,ZYX"
TCGA.AG.A01W.01A	7	142711843	142764449	25	-0.3262	NEUTRAL	NA	2	"OR6V1,OR9A2"
TCGA.AG.A01L.01A	7	142723275	142961611	13	0.1849	NEUTRAL	NA	6	"GSTK1,OR6V1,OR9A2,PIP,TAS2R39,TAS2R40"
TCGA.AA.A00J.01A	7	142723275	142965807	16	-0.1066	NEUTRAL	NA	6	"GSTK1,OR6V1,OR9A2,PIP,TAS2R39,TAS2R40"
TCGA.AG.A016.01A	7	142723275	143013254	28	0.2963	NEUTRAL	NA	9	"CASP2,CLCN1,GSTK1,OR6V1,OR9A2,PIP,TAS2R39,TAS2R40,TMEM139"
TCGA.AA.A00D.01A	7	142723275	158935086	619	0.2021	NEUTRAL	NA	116	Too-Many
TCGA.DC.6683	7	142817551	142855399	8	-0.4934	NEUTRAL	NA	1	PIP
TCGA.CK.5914.01A	7	142832239	143000830	24	-0.1325	NEUTRAL	NA	6	"CASP2,GSTK1,PIP,TAS2R39,TAS2R40,TMEM139"
TCGA.DC.6683	7	142899392	159119219	5015	0.2886	NEUTRAL	NA	112	Too-Many
TCGA.AG.3909.01A	7	142961123	142997276	15	-0.3335	NEUTRAL	NA	3	"CASP2,GSTK1,TMEM139"
TCGA.AG.A01L.01A	7	142962078	143053641	37	-0.1372	NEUTRAL	NA	5	"CASP2,CLCN1,FAM131B,GSTK1,TMEM139"
TCGA.AG.A015.01A	7	143000830	143057106	29	-0.1327	NEUTRAL	NA	3	"CASP2,CLCN1,FAM131B"
TCGA.AF.3914.01A	7	143013254	143055878	26	0.1003	NEUTRAL	NA	2	"CLCN1,FAM131B"
TCGA.AG.A016.01A	7	143016801	143055878	24	-0.0656	NEUTRAL	NA	2	"CLCN1,FAM131B"
TCGA.AA.A02E.01A	7	143036299	156480687	588	-0.0856	NEUTRAL	NA	99	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ARHGEF35,ARHGEF5,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CLCN1,CNPY1,CNTNAP2,CRYGN,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,DPP6,EN2,EPHA1,EZH2,FAM131B,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,NOBOX,NOS3,NUB1,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,PAXIP1,PDIA4,PRKAG2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM176A,TMEM176B,TMUB1,TPK1,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862,ZYX"
TCGA.CK.5914.01A	7	143043922	143104637	35	-0.3388	NEUTRAL	NA	4	"CLCN1,EPHA1,FAM131B,ZYX"
TCGA.AG.A01L.01A	7	143054052	158935086	749	0.2419	NEUTRAL	NA	107	Too-Many
TCGA.AA.A010.01A	7	143078297	143078628	2	-0.4469	NEUTRAL	NA	1	ZYX
TCGA.AA.A00J.01A	7	143078628	158935086	579	-0.0634	NEUTRAL	NA	106	Too-Many
TCGA.AG.3906.01A	7	143079329	143140938	22	0.2986	NEUTRAL	NA	3	"EPHA1,TAS2R60,ZYX"
TCGA.AG.A015.01A	7	143079329	158935086	734	0.3346	NEUTRAL	NA	106	Too-Many
TCGA.AA.A01Q.01A	7	143096003	150642411	209	0.106	NEUTRAL	NA	60	"ACTR3C,AOC1,ARHGEF35,ARHGEF5,ATP6V0E2,C7orf33,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,EZH2,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,KCNH2,KRBA1,LRRC61,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,PDIA4,RARRES2,REPIN1,SSPO,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM176A,TMEM176B,TPK1,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AF.3914.01A	7	143096712	150558079	310	-0.0926	NEUTRAL	NA	59	"ACTR3C,AOC1,ARHGEF35,ARHGEF5,ATP6V0E2,C7orf33,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,EZH2,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,KRBA1,LRRC61,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,PDIA4,RARRES2,REPIN1,SSPO,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM176A,TMEM176B,TPK1,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.CK.5914.01A	7	143140539	148457398	99	0.3559	NEUTRAL	NA	26	"ARHGEF35,ARHGEF5,C7orf33,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TAS2R41,TAS2R60,TCAF1,TCAF2,TPK1"
TCGA.AA.3982	7	143141474	147973956	1440	-0.0384	NEUTRAL	NA	24	"ARHGEF35,ARHGEF5,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TAS2R41,TAS2R60,TCAF1,TCAF2,TPK1"
TCGA.AA.3850	7	143156141	147553292	1222	-0.38055	NEUTRAL	NA	23	"ARHGEF35,ARHGEF5,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TAS2R41,TCAF1,TCAF2,TPK1"
TCGA.AA.3811	7	143156141	147798728	1342	-0.1886	NEUTRAL	NA	23	"ARHGEF35,ARHGEF5,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TAS2R41,TCAF1,TCAF2,TPK1"
TCGA.AG.3906.01A	7	143174939	144015200	29	-0.3279	NEUTRAL	NA	19	"ARHGEF35,CTAGE15,CTAGE4,CTAGE6,CTAGE8,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TAS2R41,TCAF1,TCAF2"
TCGA.AA.3941	7	143188182	147788949	1323	0.0683	NEUTRAL	NA	22	"ARHGEF35,ARHGEF5,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TCAF1,TCAF2,TPK1"
TCGA.AG.A016.01A	7	143416745	144096456	39	0.0396	NEUTRAL	NA	19	"ARHGEF35,ARHGEF5,CTAGE4,CTAGE6,CTAGE8,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TCAF1,TCAF2"
TCGA.AG.A026	7	143430575	151791169	2461	0.0061	NEUTRAL	NA	77	"ABCB8,ABCF2,ACTR3C,AGAP3,AOC1,ARHGEF35,ARHGEF5,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNTNAP2,CRYGN,CTAGE4,CTAGE6,CTAGE8,CUL1,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,KRBA1,LRRC61,NOBOX,NOS3,NUB1,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,PDIA4,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,SSPO,TCAF1,TMEM176A,TMEM176B,TMUB1,TPK1,WDR86,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.A6.3808.01A	7	143573060	143826188	10	0.1964	NEUTRAL	NA	8	"OR2A12,OR2A2,OR2A25,OR2A5,OR2F1,OR2F2,OR6B1,TCAF1"
TCGA.AA.A010.01A	7	143806675	144245547	29	-0.4941	NEUTRAL	NA	11	"ARHGEF35,ARHGEF5,CTAGE4,CTAGE8,NOBOX,OR2A1,OR2A14,OR2A2,OR2A42,OR2A7,TPK1"
TCGA.AG.4009.01A	7	143881150	144107188	29	-0.329	NEUTRAL	NA	8	"ARHGEF35,ARHGEF5,CTAGE4,CTAGE8,NOBOX,OR2A1,OR2A42,OR2A7"
TCGA.AA.A00N.01A	7	143881150	146471346	40	-0.1947	NEUTRAL	NA	10	"ARHGEF35,ARHGEF5,CNTNAP2,CTAGE4,CTAGE8,NOBOX,OR2A1,OR2A42,OR2A7,TPK1"
TCGA.AA.A02H.01A	7	143929871	146740972	30	0.3428	NEUTRAL	NA	9	"ARHGEF5,CNTNAP2,CTAGE4,CTAGE8,NOBOX,OR2A1,OR2A42,OR2A7,TPK1"
TCGA.A6.3810.01A	7	143929871	158936978	893	-0.0217	NEUTRAL	NA	89	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ARHGEF5,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CTAGE4,CTAGE8,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOBOX,NOM1,NOS3,NUB1,OR2A1,OR2A42,OR2A7,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,TPK1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AG.3906.01A	7	144059714	144072570	8	0.0254	NEUTRAL	NA	1	ARHGEF5
TCGA.A6.3808.01A	7	144075807	148457398	55	0.2472	NEUTRAL	NA	6	"ARHGEF5,C7orf33,CNTNAP2,CUL1,NOBOX,TPK1"
TCGA.AA.3862.01A	7	144096456	148947725	122	0.2669	NEUTRAL	NA	12	"C7orf33,CNTNAP2,CUL1,EZH2,NOBOX,PDIA4,TPK1,ZNF212,ZNF282,ZNF398,ZNF425,ZNF786"
TCGA.AG.A016.01A	7	144096800	148451030	42	0.3635	NEUTRAL	NA	5	"C7orf33,CNTNAP2,CUL1,NOBOX,TPK1"
TCGA.AA.3861.01A	7	144097193	149152227	126	0.2753	NEUTRAL	NA	14	"C7orf33,CNTNAP2,CUL1,EZH2,NOBOX,PDIA4,TPK1,ZNF212,ZNF282,ZNF398,ZNF425,ZNF777,ZNF783,ZNF786"
TCGA.AA.A00Q.01A	7	144150590	147964073	29	0.3398	NEUTRAL	NA	2	"CNTNAP2,TPK1"
TCGA.AG.3906.01A	7	144150590	148484034	45	-0.0859	NEUTRAL	NA	4	"C7orf33,CNTNAP2,CUL1,TPK1"
TCGA.AA.3844	7	144164324	147144246	873	0.1189	NEUTRAL	NA	2	"CNTNAP2,TPK1"
TCGA.AG.3727	7	144216041	144287819	26	0.0651	NEUTRAL	NA	1	TPK1
TCGA.AA.3841	7	144221391	144319096	37	0.0283	NEUTRAL	NA	1	TPK1
TCGA.AA.A010.01A	7	144288469	147926698	29	0.2107	NEUTRAL	NA	2	"CNTNAP2,TPK1"
TCGA.AG.3727	7	144295969	147002531	761	0.3738	NEUTRAL	NA	2	"CNTNAP2,TPK1"
TCGA.AA.3841	7	144319245	159119219	4744	0.3037	NEUTRAL	NA	82	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,TPK1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AF.6672	7	144945010	159119219	4565	0.0015	NEUTRAL	NA	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3956	7	146022815	149636503	1230	0.0037	NEUTRAL	NA	18	"ATP6V0E2,C7orf33,CNTNAP2,CUL1,EZH2,KRBA1,PDIA4,SSPO,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3529	7	146093082	146689066	197	-0.4791	NEUTRAL	NA	1	CNTNAP2
TCGA.CM.4752	7	146361572	146492998	43	-0.0191	NEUTRAL	NA	1	CNTNAP2
TCGA.AA.3812	7	146430440	146775332	103	-0.0807	NEUTRAL	NA	1	CNTNAP2
TCGA.CM.4752	7	146499124	146823360	101	-0.3627	NEUTRAL	NA	1	CNTNAP2
TCGA.AA.3529	7	146690736	159119219	4089	-0.0174	NEUTRAL	NA	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3812	7	146781979	159119219	4060	0.2788	NEUTRAL	NA	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.CM.4752	7	146824548	146935929	29	0.0583	NEUTRAL	NA	1	CNTNAP2
TCGA.AA.3977	7	146908918	148266043	614	-0.065	NEUTRAL	NA	1	CNTNAP2
TCGA.AA.3844	7	147155587	147445407	151	0.1645	NEUTRAL	NA	1	CNTNAP2
TCGA.AA.3872	7	147157356	147321797	111	0.317	NEUTRAL	NA	1	CNTNAP2
TCGA.AA.3872	7	147333320	147394198	12	-0.3511	NEUTRAL	NA	1	CNTNAP2
TCGA.AA.3850	7	147554257	147650272	48	0.24825	NEUTRAL	NA	1	CNTNAP2
TCGA.A6.5665	7	147618317	158915081	3641	-0.464	NEUTRAL	NA	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.A6.2672	7	147618317	159119219	3688	-0.489	NEUTRAL	NA	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3850	7	147650410	147772965	59	-0.18935	NEUTRAL	NA	1	CNTNAP2
TCGA.AY.4070	7	147689624	149636503	576	0.2876	NEUTRAL	NA	18	"ATP6V0E2,C7orf33,CNTNAP2,CUL1,EZH2,KRBA1,PDIA4,SSPO,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3852	7	147729498	159119219	3659	0.3252	NEUTRAL	NA	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3850	7	147777776	150123997	598	0.33745	NEUTRAL	NA	24	"ACTR3C,ATP6V0E2,C7orf33,CNTNAP2,CUL1,EZH2,KRBA1,LRRC61,PDIA4,RARRES2,REPIN1,SSPO,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3811	7	147799753	155293051	2422	0.2089	NEUTRAL	NA	66	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNTNAP2,CRYGN,CUL1,DPP6,EN2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LRRC61,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.A02H.01A	7	147914342	154755327	421	0.2048	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNTNAP2,CRYGN,CUL1,DPP6,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,KMT2C,KRBA1,LRRC61,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AG.3890	7	148275665	148368562	31	-0.4534	NEUTRAL	NA	1	C7orf33
TCGA.AG.3890	7	148371317	159119219	3366	0.185	NEUTRAL	NA	79	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CNPY1,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3977	7	148417162	149636503	278	0.1763	NEUTRAL	NA	16	"ATP6V0E2,CUL1,EZH2,KRBA1,PDIA4,SSPO,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AG.A01W.01A	7	148440115	148581625	22	-0.1331	NEUTRAL	NA	2	"CUL1,EZH2"
TCGA.AG.3909.01A	7	148457398	148494838	11	-0.3866	NEUTRAL	NA	1	CUL1
TCGA.AZ.4684.01A	7	148463616	148512518	20	-0.0273	NEUTRAL	NA	2	"CUL1,EZH2"
TCGA.AA.A00Q.01A	7	148463616	148718018	40	0.2892	NEUTRAL	NA	3	"CUL1,EZH2,PDIA4"
TCGA.CK.5914.01A	7	148463616	150093553	206	-0.1775	NEUTRAL	NA	22	"ACTR3C,ATP6V0E2,CUL1,EZH2,KRBA1,LRRC61,PDIA4,RARRES2,REPIN1,SSPO,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.A01R	7	148464674	159119219	3351	-0.0072	NEUTRAL	NA	79	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CNPY1,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AG.3906.01A	7	148485602	148513722	16	-0.3993	NEUTRAL	NA	2	"CUL1,EZH2"
TCGA.AA.A00N.01A	7	148489767	148768907	39	-0.1777	NEUTRAL	NA	4	"CUL1,EZH2,PDIA4,ZNF786"
TCGA.AG.3909.01A	7	148495612	148497543	3	0.0775	NEUTRAL	NA	1	CUL1
TCGA.A6.3808.01A	7	148504672	148709208	26	0.2528	NEUTRAL	NA	2	"EZH2,PDIA4"
TCGA.AA.3509.01A	7	148504672	151042384	375	-0.0518	NEUTRAL	NA	49	"ABCB8,ABCF2,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,EZH2,FASTK,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,KRBA1,LRRC61,NOS3,NUB1,PDIA4,RARRES2,REPIN1,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.A010.01A	7	148512518	148823200	35	0.2932	NEUTRAL	NA	4	"EZH2,PDIA4,ZNF425,ZNF786"
TCGA.AZ.4684.01A	7	148513722	151880012	462	0.3596	NEUTRAL	NA	56	"ABCB8,ABCF2,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CRYGN,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,KMT2C,KRBA1,LRRC61,NOS3,NUB1,PDIA4,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,WDR86,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.CK.4948.01B	7	148514312	148529679	8	-0.4332	NEUTRAL	NA	1	EZH2
TCGA.AG.3906.01A	7	148514312	148768468	21	-0.0659	NEUTRAL	NA	3	"EZH2,PDIA4,ZNF786"
TCGA.CK.4948.01B	7	148543524	158936978	784	0.2068	NEUTRAL	NA	78	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AG.3909.01A	7	148700839	148703006	3	0.0445	NEUTRAL	NA	1	PDIA4
TCGA.AG.A016.01A	7	148700839	148705214	4	0.3036	NEUTRAL	NA	1	PDIA4
TCGA.AG.A00C.01A	7	148700839	150772752	206	0.2171	NEUTRAL	NA	38	"ABCB8,ACTR3C,AOC1,ASIC3,ATG9B,ATP6V0E2,CDK5,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,KCNH2,KRBA1,LRRC61,NOS3,PDIA4,RARRES2,REPIN1,SLC4A2,SSPO,TMEM176A,TMEM176B,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AF.2689	7	148704633	148916043	54	-0.2066	NEUTRAL	NA	5	"PDIA4,ZNF282,ZNF398,ZNF425,ZNF786"
TCGA.AG.3909.01A	7	148705214	148815276	15	-0.4575	NEUTRAL	NA	3	"PDIA4,ZNF425,ZNF786"
TCGA.AG.A016.01A	7	148708896	158935086	603	-0.0718	NEUTRAL	NA	77	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AG.4009.01A	7	148777632	148950633	20	-0.2853	NEUTRAL	NA	5	"ZNF212,ZNF282,ZNF398,ZNF425,ZNF786"
TCGA.AG.3909.01A	7	148850995	149547213	98	0.2606	NEUTRAL	NA	10	"KRBA1,SSPO,ZNF212,ZNF282,ZNF398,ZNF467,ZNF746,ZNF777,ZNF783,ZNF862"
TCGA.AF.2689	7	148916626	152121444	820	0.2894	NEUTRAL	NA	51	"ABCB8,ABCF2,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CRYGN,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,KMT2C,KRBA1,LRRC61,NOS3,NUB1,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,WDR86,ZBED6CL,ZNF212,ZNF282,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF862"
TCGA.AA.3862.01A	7	148949741	149541666	101	-0.3251	NEUTRAL	NA	8	"KRBA1,SSPO,ZNF212,ZNF467,ZNF746,ZNF777,ZNF783,ZNF862"
TCGA.AG.A01W.01A	7	149122766	149137364	18	-0.3312	NEUTRAL	NA	1	ZNF777
TCGA.AA.3861.01A	7	149171433	149525958	79	-0.4099	NEUTRAL	NA	4	"KRBA1,SSPO,ZNF467,ZNF746"
TCGA.AA.A00Q.01A	7	149171433	158935086	423	0.3304	NEUTRAL	NA	69	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF467,ZNF746,ZNF775,ZNF862"
TCGA.AA.3556	7	149173751	159119219	3190	-0.0056	NEUTRAL	NA	69	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF467,ZNF746,ZNF775,ZNF862"
TCGA.AG.3891.01A	7	149189909	149508972	54	-0.1397	NEUTRAL	NA	4	"KRBA1,SSPO,ZNF467,ZNF746"
TCGA.AA.A00A.01A	7	149191413	150037485	14	-0.3893	NEUTRAL	NA	10	"ACTR3C,ATP6V0E2,KRBA1,LRRC61,RARRES2,SSPO,ZBED6CL,ZNF467,ZNF746,ZNF862"
TCGA.AA.A010.01A	7	149255824	149318309	3	0.0062	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	7	149255824	149496895	34	-0.3715	NEUTRAL	NA	3	"KRBA1,SSPO,ZNF467"
TCGA.AG.3906.01A	7	149316966	149508678	36	0.0769	NEUTRAL	NA	3	"KRBA1,SSPO,ZNF467"
TCGA.AA.A02K.01A	7	149316967	149467513	22	0.1015	NEUTRAL	NA	2	"KRBA1,ZNF467"
TCGA.AA.A00N.01A	7	149318309	149529815	93	-0.213	NEUTRAL	NA	3	"KRBA1,SSPO,ZNF467"
TCGA.AA.A02K.01A	7	149468005	149525675	66	0.3457	NEUTRAL	NA	2	"SSPO,ZNF467"
TCGA.AA.3967.01A	7	149477830	149517691	44	0.0194	NEUTRAL	NA	1	SSPO
TCGA.AG.4009.01A	7	149502462	150167848	47	0.0397	NEUTRAL	NA	10	"ACTR3C,ATP6V0E2,GIMAP8,LRRC61,RARRES2,REPIN1,SSPO,ZBED6CL,ZNF775,ZNF862"
TCGA.AG.3906.01A	7	149508972	150033939	32	-0.3888	NEUTRAL	NA	6	"ACTR3C,ATP6V0E2,LRRC61,SSPO,ZBED6CL,ZNF862"
TCGA.AA.A010.01A	7	149508972	150068870	54	-0.2174	NEUTRAL	NA	8	"ACTR3C,ATP6V0E2,LRRC61,RARRES2,REPIN1,SSPO,ZBED6CL,ZNF862"
TCGA.AG.3591	7	149516880	159039806	3103	-0.2529	NEUTRAL	NA	66	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775,ZNF862"
TCGA.AG.3891.01A	7	149528197	150779230	136	0.0061	NEUTRAL	NA	29	"ABCB8,ACTR3C,AOC1,ASIC3,ATG9B,ATP6V0E2,CDK5,FASTK,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,KCNH2,LRRC61,NOS3,RARRES2,REPIN1,SLC4A2,SSPO,TMEM176A,TMEM176B,TMUB1,ZBED6CL,ZNF775,ZNF862"
TCGA.AA.3861.01A	7	149528197	151917621	284	0.199	NEUTRAL	NA	44	"ABCB8,ABCF2,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CRYGN,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,KMT2C,LRRC61,NOS3,NUB1,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,WDR86,ZBED6CL,ZNF775,ZNF862"
TCGA.AA.3967.01A	7	149530812	149576416	13	0.0771	NEUTRAL	NA	3	"ATP6V0E2,SSPO,ZNF862"
TCGA.AA.3862.01A	7	149544785	151917621	289	0.2759	NEUTRAL	NA	43	"ABCB8,ABCF2,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,CDK5,CHPF2,CRYGN,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,KMT2C,LRRC61,NOS3,NUB1,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,WDR86,ZBED6CL,ZNF775,ZNF862"
TCGA.AA.A02K.01A	7	149557431	150644388	59	0.2175	NEUTRAL	NA	20	"ACTR3C,AOC1,ATP6V0E2,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,KCNH2,LRRC61,RARRES2,REPIN1,TMEM176A,TMEM176B,ZBED6CL,ZNF775,ZNF862"
TCGA.AG.3909.01A	7	149575714	150068870	12	-0.1412	NEUTRAL	NA	6	"ACTR3C,ATP6V0E2,LRRC61,RARRES2,REPIN1,ZBED6CL"
TCGA.AM.5820	7	149604819	150586767	266	0.0816	NEUTRAL	NA	17	"ACTR3C,AOC1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,LRRC61,RARRES2,REPIN1,TMEM176A,TMEM176B,ZBED6CL,ZNF775"
TCGA.F4.6570	7	149636503	159119219	3090	-0.0413	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3982	7	149642018	149672047	4	-0.4408	NEUTRAL	NA	0	None
TCGA.AY.4070	7	149672047	150967811	336	0.2762	NEUTRAL	NA	33	"ABCB8,ABCF2,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,FASTK,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,LRRC61,NOS3,RARRES2,REPIN1,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,ZBED6CL,ZNF775"
TCGA.AA.3664	7	149672047	159119219	3087	-0.0194	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3695	7	149672047	159119219	3087	0.3132	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3848	7	149672047	159119219	3088	0.0172	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3854	7	149672047	159119219	3088	0.186	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3947	7	149672047	159119219	3079	-0.0212	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3956	7	149672047	159119219	3083	0.0935	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3977	7	149672047	159119219	3078	0.1059	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AG.3726	7	149672047	159119219	3086	-0.0219	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3864	7	149678459	157514188	2624	0.1216	NEUTRAL	NA	59	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3866	7	149678459	157514188	2631	0.1199	NEUTRAL	NA	59	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3989	7	149678459	159119219	3083	0.0805	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AZ.6600	7	149893571	159119219	3064	0.239	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3982	7	149940827	150008547	6	-0.3297	NEUTRAL	NA	1	ACTR3C
TCGA.F4.6704	7	149992097	159119219	3059	0.3465	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.SS.A7HO	7	150008329	159119219	3059	-0.0568	NEUTRAL	NA	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AG.3906.01A	7	150035667	150558079	43	0.0045	NEUTRAL	NA	14	"AOC1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,RARRES2,REPIN1,TMEM176A,TMEM176B,ZNF775"
TCGA.AA.3850	7	150124358	150429927	124	0.01655	NEUTRAL	NA	7	"GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP6,GIMAP7,GIMAP8"
TCGA.AA.A010.01A	7	150163778	150644414	38	0.2887	NEUTRAL	NA	12	"AOC1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,KCNH2,TMEM176A,TMEM176B"
TCGA.A6.3808.01A	7	150163778	150690841	51	0.1009	NEUTRAL	NA	13	"AOC1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,KCNH2,NOS3,TMEM176A,TMEM176B"
TCGA.AA.A00A.01A	7	150163778	158935086	377	0.0496	NEUTRAL	NA	57	"ABCB8,ABCF2,ACTR3B,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2"
TCGA.AA.3982	7	150165184	150171318	4	-0.2656	NEUTRAL	NA	1	GIMAP8
TCGA.AA.3941	7	150245255	150259958	15	-0.0946	NEUTRAL	NA	0	None
TCGA.AA.3982	7	150245341	150268235	16	-0.2145	NEUTRAL	NA	1	GIMAP4
TCGA.AG.A01W.01A	7	150326337	150378453	39	0.0328	NEUTRAL	NA	1	GIMAP6
TCGA.AA.A00N.01A	7	150327092	150501874	23	-0.4071	NEUTRAL	NA	7	"GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP5,GIMAP6,TMEM176A,TMEM176B"
TCGA.AA.3850	7	150430710	152963684	732	0.36075	NEUTRAL	NA	31	"ABCB8,ABCF2,ACTR3B,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CRYGN,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1-GIMAP5,GIMAP5,IQCA1L,KCNH2,KMT2C,NOS3,NUB1,PRKAG2,RHEB,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,WDR86,XRCC2"
TCGA.AG.A01W.01A	7	150451764	150554298	28	0.0387	NEUTRAL	NA	3	"AOC1,TMEM176A,TMEM176B"
TCGA.AG.3909.01A	7	150488566	150878019	108	0.0162	NEUTRAL	NA	15	"ABCB8,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,FASTK,GBX1,KCNH2,NOS3,SLC4A2,TMEM176A,TMEM176B,TMUB1"
TCGA.CK.5914.01A	7	150489117	151866211	241	-0.1336	NEUTRAL	NA	27	"ABCB8,ABCF2,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CRYGN,FASTK,GALNT11,GALNTL5,GBX1,IQCA1L,KCNH2,KMT2C,NOS3,NUB1,PRKAG2,RHEB,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,WDR86"
TCGA.AA.A00N.01A	7	150642411	150905086	118	-0.4784	NEUTRAL	NA	14	"ABCB8,ABCF2,AGAP3,ASB10,ASIC3,ATG9B,CDK5,FASTK,GBX1,IQCA1L,KCNH2,NOS3,SLC4A2,TMUB1"
TCGA.AF.3914.01A	7	150643933	150764929	62	-0.4018	NEUTRAL	NA	7	"ABCB8,ASIC3,ATG9B,CDK5,KCNH2,NOS3,SLC4A2"
TCGA.AG.4009.01A	7	150643933	150775617	75	-0.3165	NEUTRAL	NA	8	"ABCB8,ASIC3,ATG9B,CDK5,FASTK,KCNH2,NOS3,SLC4A2"
TCGA.AA.A02K.01A	7	150645493	150654329	8	-0.3325	NEUTRAL	NA	1	KCNH2
TCGA.AA.A01Q.01A	7	150655120	150720753	19	0.1343	NEUTRAL	NA	3	"ATG9B,KCNH2,NOS3"
TCGA.AA.A02K.01A	7	150656634	158935108	557	0.3312	NEUTRAL	NA	46	"ABCB8,ABCF2,ACTR3B,AGAP3,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2"
TCGA.AG.3611.01A	7	150671752	150730642	15	-0.0663	NEUTRAL	NA	4	"ABCB8,ATG9B,KCNH2,NOS3"
TCGA.AG.A01W.01A	7	150677077	150688114	6	-0.271	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	7	150694908	151146646	61	0.165	NEUTRAL	NA	18	"ABCB8,ABCF2,AGAP3,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CRYGN,FASTK,GBX1,IQCA1L,NOS3,NUB1,SLC4A2,SMARCD3,TMUB1,WDR86"
TCGA.AG.3906.01A	7	150695987	150739041	29	0.0283	NEUTRAL	NA	3	"ABCB8,ATG9B,NOS3"
TCGA.AF.2693	7	150710391	150889526	39	-0.4154	NEUTRAL	NA	12	"ABCB8,AGAP3,ASB10,ASIC3,ATG9B,CDK5,FASTK,GBX1,IQCA1L,NOS3,SLC4A2,TMUB1"
TCGA.AA.A029.01A	7	150730642	158935086	423	0.0657	NEUTRAL	NA	43	"ABCB8,ABCF2,ACTR3B,AGAP3,ASB10,ASIC3,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,HTR5A,INSIG1,IQCA1L,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,NUB1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2"
TCGA.AG.3611.01A	7	150731322	152551494	187	0.3046	NEUTRAL	NA	23	"ABCB8,ABCF2,ACTR3B,AGAP3,ASB10,ASIC3,CDK5,CHPF2,CRYGN,FASTK,GALNT11,GALNTL5,GBX1,IQCA1L,KMT2C,NUB1,PRKAG2,RHEB,SLC4A2,SMARCD3,TMUB1,WDR86,XRCC2"
TCGA.AA.A01Q.01A	7	150751052	150753629	3	0.3034	NEUTRAL	NA	1	CDK5
TCGA.D5.5541	7	150772916	159119219	2798	0.3548	NEUTRAL	NA	40	"ABCF2,ACTR3B,AGAP3,ASB10,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,HTR5A,INSIG1,IQCA1L,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,NUB1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2"
TCGA.AF.3914.01A	7	150773061	150778585	8	-0.2621	NEUTRAL	NA	3	"FASTK,SLC4A2,TMUB1"
TCGA.AG.A00C.01A	7	150773061	150779230	7	-0.1246	NEUTRAL	NA	3	"FASTK,SLC4A2,TMUB1"
TCGA.AA.A01Q.01A	7	150783799	150873242	12	0.3026	NEUTRAL	NA	3	"AGAP3,ASB10,GBX1"
TCGA.AG.3891.01A	7	150819743	151817894	97	0.1409	NEUTRAL	NA	14	"ABCF2,AGAP3,ASB10,CHPF2,CRYGN,GALNT11,GALNTL5,GBX1,IQCA1L,NUB1,PRKAG2,RHEB,SMARCD3,WDR86"
TCGA.AF.3914.01A	7	150820830	150936702	32	-0.1702	NEUTRAL	NA	7	"ABCF2,AGAP3,ASB10,CHPF2,GBX1,IQCA1L,SMARCD3"
TCGA.A6.6653	7	150822325	154860409	1370	-0.021	NEUTRAL	NA	19	"ABCF2,ACTR3B,AGAP3,ASB10,CHPF2,CRYGN,DPP6,GALNT11,GALNTL5,GBX1,IQCA1L,KMT2C,NUB1,PAXIP1,PRKAG2,RHEB,SMARCD3,WDR86,XRCC2"
TCGA.AG.3906.01A	7	150825616	150932115	25	0.1518	NEUTRAL	NA	6	"ABCF2,AGAP3,ASB10,CHPF2,GBX1,IQCA1L"
TCGA.AG.4009.01A	7	150831440	150845634	6	-0.1969	NEUTRAL	NA	1	AGAP3
TCGA.AG.4009.01A	7	150864087	150883427	4	0.2063	NEUTRAL	NA	2	"ASB10,GBX1"
TCGA.AG.3909.01A	7	150883427	151135101	48	-0.2626	NEUTRAL	NA	8	"ABCF2,ASB10,CHPF2,CRYGN,IQCA1L,NUB1,SMARCD3,WDR86"
TCGA.AF.2693	7	150890240	159119219	2771	0.0207	NEUTRAL	NA	34	"ABCF2,ACTR3B,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,GALNT11,GALNTL5,HTR5A,INSIG1,IQCA1L,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,NUB1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,SMARCD3,UBE3C,VIPR2,WDR60,WDR86,XRCC2"
TCGA.AG.4009.01A	7	150916100	150931071	7	0.3087	NEUTRAL	NA	2	"ABCF2,CHPF2"
TCGA.AA.A00L.01A	7	150923344	150937161	9	-0.1249	NEUTRAL	NA	3	"ABCF2,CHPF2,SMARCD3"
TCGA.AG.4009.01A	7	150932115	151135101	31	-0.3682	NEUTRAL	NA	5	"CHPF2,CRYGN,NUB1,SMARCD3,WDR86"
TCGA.AA.A01K.01A	7	150936430	151262766	35	-0.1473	NEUTRAL	NA	6	"CRYGN,NUB1,PRKAG2,RHEB,SMARCD3,WDR86"
TCGA.AA.A004.01A	7	150937161	158935086	357	0.2024	NEUTRAL	NA	31	"ACTR3B,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,NUB1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,SMARCD3,UBE3C,VIPR2,WDR60,WDR86,XRCC2"
TCGA.AM.5820	7	150955764	151066540	50	0.0664	NEUTRAL	NA	2	"NUB1,SMARCD3"
TCGA.AA.A00L.01A	7	150972122	158935086	275	0.1077	NEUTRAL	NA	31	"ACTR3B,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,NUB1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,SMARCD3,UBE3C,VIPR2,WDR60,WDR86,XRCC2"
TCGA.AA.A010.01A	7	151042384	151684197	51	0.0725	NEUTRAL	NA	6	"CRYGN,GALNTL5,NUB1,PRKAG2,RHEB,WDR86"
TCGA.AF.3914.01A	7	151042384	155567620	213	0.0601	NEUTRAL	NA	17	"ACTR3B,CNPY1,CRYGN,DPP6,EN2,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,NUB1,PAXIP1,PRKAG2,RBM33,RHEB,WDR86,XRCC2"
TCGA.AG.3906.01A	7	151042384	156629445	240	-0.1596	NEUTRAL	NA	21	"ACTR3B,CNPY1,CRYGN,DPP6,EN2,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,NUB1,PAXIP1,PRKAG2,RBM33,RHEB,RNF32,SHH,WDR86,XRCC2"
TCGA.AA.3509.01A	7	151063983	151880012	88	-0.1803	NEUTRAL	NA	8	"CRYGN,GALNT11,GALNTL5,KMT2C,NUB1,PRKAG2,RHEB,WDR86"
TCGA.AA.A00N.01A	7	151078935	151852953	65	-0.3757	NEUTRAL	NA	7	"CRYGN,GALNT11,GALNTL5,KMT2C,PRKAG2,RHEB,WDR86"
TCGA.A6.3808.01A	7	151078935	151917621	92	-0.0499	NEUTRAL	NA	7	"CRYGN,GALNT11,GALNTL5,KMT2C,PRKAG2,RHEB,WDR86"
TCGA.AG.A00C.01A	7	151082156	158935086	361	0.0618	NEUTRAL	NA	29	"ACTR3B,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,UBE3C,VIPR2,WDR60,WDR86,XRCC2"
TCGA.AM.5820	7	151096951	151354399	88	-0.0151	NEUTRAL	NA	4	"CRYGN,PRKAG2,RHEB,WDR86"
TCGA.AY.4070	7	151118603	152060154	247	0.2708	NEUTRAL	NA	6	"CRYGN,GALNT11,GALNTL5,KMT2C,PRKAG2,RHEB"
TCGA.AA.A01Q.01A	7	151164151	155089959	124	0.1261	NEUTRAL	NA	11	"ACTR3B,DPP6,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,PAXIP1,PRKAG2,RHEB,XRCC2"
TCGA.AG.4009.01A	7	151164151	156629445	215	0.2319	NEUTRAL	NA	18	"ACTR3B,CNPY1,DPP6,EN2,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,PAXIP1,PRKAG2,RBM33,RHEB,RNF32,SHH,XRCC2"
TCGA.AA.A01K.01A	7	151271906	154429457	107	0.1978	NEUTRAL	NA	7	"ACTR3B,DPP6,GALNT11,GALNTL5,KMT2C,PRKAG2,XRCC2"
TCGA.AM.5820	7	151356273	151617907	86	0.3772	NEUTRAL	NA	1	PRKAG2
TCGA.AM.5820	7	151625055	157063275	1913	0.0735	NEUTRAL	NA	19	"ACTR3B,CNPY1,DPP6,EN2,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NOM1,PAXIP1,RBM33,RNF32,SHH,UBE3C,XRCC2"
TCGA.AA.A010.01A	7	151791266	152027639	70	0.1613	NEUTRAL	NA	2	"GALNT11,KMT2C"
TCGA.AG.3891.01A	7	151818584	152027639	61	-0.225	NEUTRAL	NA	2	"GALNT11,KMT2C"
TCGA.AA.3967.01A	7	151833864	156685568	182	0.1064	NEUTRAL	NA	14	"ACTR3B,CNPY1,DPP6,EN2,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,PAXIP1,RBM33,RNF32,SHH,XRCC2"
TCGA.A6.3808.01A	7	151944947	158936978	312	-0.3217	NEUTRAL	NA	23	"ACTR3B,CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60,XRCC2"
TCGA.AA.3861.01A	7	151946901	152497599	19	0.2647	NEUTRAL	NA	3	"ACTR3B,KMT2C,XRCC2"
TCGA.AA.3862.01A	7	151946901	152497599	20	0.0874	NEUTRAL	NA	3	"ACTR3B,KMT2C,XRCC2"
TCGA.AA.3509.01A	7	152007003	156556316	142	-0.1665	NEUTRAL	NA	14	"ACTR3B,CNPY1,DPP6,EN2,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,PAXIP1,RBM33,RNF32,SHH,XRCC2"
TCGA.AZ.4684.01A	7	152007003	158936978	304	0.1674	NEUTRAL	NA	23	"ACTR3B,CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60,XRCC2"
TCGA.AG.3891.01A	7	152055620	152357728	5	0.3115	NEUTRAL	NA	2	"KMT2C,XRCC2"
TCGA.AA.A00N.01A	7	152055620	154777718	64	-0.108	NEUTRAL	NA	5	"ACTR3B,DPP6,KMT2C,PAXIP1,XRCC2"
TCGA.AY.4070	7	152093734	159119219	2426	-0.423	NEUTRAL	NA	23	"ACTR3B,CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60,XRCC2"
TCGA.CK.5914.01A	7	152142595	152357728	4	-0.3887	NEUTRAL	NA	1	XRCC2
TCGA.AF.2689	7	152159505	152304514	30	-0.1491	NEUTRAL	NA	0	None
TCGA.AF.2689	7	152305573	159119219	2402	0.2472	NEUTRAL	NA	22	"ACTR3B,CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60,XRCC2"
TCGA.AA.A010.01A	7	152345696	154760686	58	0.3084	NEUTRAL	NA	4	"ACTR3B,DPP6,PAXIP1,XRCC2"
TCGA.AG.3891.01A	7	152373048	154777718	55	-0.2233	NEUTRAL	NA	4	"ACTR3B,DPP6,PAXIP1,XRCC2"
TCGA.RU.A8FL	7	152417698	152499821	11	0.3008	NEUTRAL	NA	1	ACTR3B
TCGA.CK.5914.01A	7	152517357	156468338	114	-0.2245	NEUTRAL	NA	11	"ACTR3B,CNPY1,DPP6,EN2,HTR5A,INSIG1,LOC389602,PAXIP1,RBM33,RNF32,SHH"
TCGA.AA.3861.01A	7	152520377	158936978	281	-0.0425	NEUTRAL	NA	21	"ACTR3B,CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.3862.01A	7	152520377	158936978	283	-0.0044	NEUTRAL	NA	21	"ACTR3B,CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.RU.A8FL	7	152539174	153884956	477	0.178	NEUTRAL	NA	2	"ACTR3B,DPP6"
TCGA.A6.3807	7	152624869	159119219	2333	-0.0185	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.3975	7	152970478	153165717	89	-0.0639	NEUTRAL	NA	0	None
TCGA.AA.3850	7	152976245	154200119	473	0.16465	NEUTRAL	NA	1	DPP6
TCGA.AG.A02N	7	152983568	159119219	2168	0.012	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.CA.5254	7	153079425	159119219	2124	-0.0284	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.CM.6675	7	153728143	159119219	1895	0.026	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.3850	7	154207041	154461964	85	0.10575	NEUTRAL	NA	1	DPP6
TCGA.AH.6897	7	154429559	159119219	1625	0.3106	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.D5.6923	7	154429559	159119219	1626	0.2016	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.A6.2674	7	154443330	159022348	1593	0.0149	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.A01K.01A	7	154461049	158935086	221	-0.3789	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AG.A01N.01A	7	154461049	158935086	229	-0.0522	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.3850	7	154462070	159046948	1592	0.36145	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.D5.6898	7	154486563	159119219	1590	0.0127	NEUTRAL	NA	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AG.3611.01A	7	154720327	156451104	33	0.0048	NEUTRAL	NA	9	"CNPY1,EN2,HTR5A,INSIG1,LOC389602,PAXIP1,RBM33,RNF32,SHH"
TCGA.AA.A02H.01A	7	154767405	158935086	192	0.0726	NEUTRAL	NA	19	"CNPY1,DNAJB6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AG.3891.01A	7	154782650	155473366	19	0.0549	NEUTRAL	NA	6	"CNPY1,EN2,HTR5A,INSIG1,PAXIP1,RBM33"
TCGA.AG.3909.01A	7	154785356	156451104	41	-0.1917	NEUTRAL	NA	9	"CNPY1,EN2,HTR5A,INSIG1,LOC389602,PAXIP1,RBM33,RNF32,SHH"
TCGA.A6.6648	7	154862620	159119219	1412	0.2085	NEUTRAL	NA	18	"CNPY1,DNAJB6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.A6.6653	7	154862620	159119219	1412	-0.02	NEUTRAL	NA	18	"CNPY1,DNAJB6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.DY.A1DG	7	155236460	159119219	1209	-0.0065	NEUTRAL	NA	16	"CNPY1,DNAJB6,EN2,ESYT2,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.3844	7	155293051	155296614	4	-0.4702	NEUTRAL	NA	1	CNPY1
TCGA.AA.A010.01A	7	155295692	155493440	11	-0.3369	NEUTRAL	NA	2	"CNPY1,RBM33"
TCGA.AA.3811	7	155301892	159119219	1185	0.2382	NEUTRAL	NA	15	"CNPY1,DNAJB6,ESYT2,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.A00N.01A	7	155403947	156451468	37	-0.5132	NEUTRAL	NA	4	"LOC389602,RBM33,RNF32,SHH"
TCGA.AA.A01Q.01A	7	155499563	156742763	39	0.1049	NEUTRAL	NA	6	"LMBR1,LOC389602,NOM1,RBM33,RNF32,SHH"
TCGA.AG.3891.01A	7	155559163	156619270	29	-0.2417	NEUTRAL	NA	5	"LMBR1,LOC389602,RBM33,RNF32,SHH"
TCGA.AG.A026	7	155613474	157171856	535	-0.0916	NEUTRAL	NA	7	"DNAJB6,LMBR1,LOC389602,MNX1,NOM1,RNF32,UBE3C"
TCGA.AA.3941	7	155645331	155651101	8	-0.0955	NEUTRAL	NA	0	None
TCGA.CI.6621	7	155655521	159119219	1081	-0.0045	NEUTRAL	NA	12	"DNAJB6,ESYT2,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RNF32,UBE3C,VIPR2,WDR60"
TCGA.AA.A010.01A	7	155755502	156742421	29	0.2448	NEUTRAL	NA	4	"LMBR1,LOC389602,NOM1,RNF32"
TCGA.EI.6508	7	155882478	155885037	4	-0.4426	NEUTRAL	NA	0	None
TCGA.RU.A8FL	7	156243561	158883949	749	0.1654	NEUTRAL	NA	11	"DNAJB6,ESYT2,LMBR1,MNX1,NCAPG2,NOM1,PTPRN2,RNF32,UBE3C,VIPR2,WDR60"
TCGA.QG.A5Z2	7	156268108	159119219	798	-0.1071	NEUTRAL	NA	11	"DNAJB6,ESYT2,LMBR1,MNX1,NCAPG2,NOM1,PTPRN2,RNF32,UBE3C,VIPR2,WDR60"
TCGA.CM.5348	7	156404061	159119219	747	-0.029	NEUTRAL	NA	11	"DNAJB6,ESYT2,LMBR1,MNX1,NCAPG2,NOM1,PTPRN2,RNF32,UBE3C,VIPR2,WDR60"
TCGA.AF.3914.01A	7	156436478	156629445	24	0.1462	NEUTRAL	NA	2	"LMBR1,RNF32"
TCGA.AG.3909.01A	7	156451468	156516763	6	0.3083	NEUTRAL	NA	2	"LMBR1,RNF32"
TCGA.EI.6513	7	156586907	159119219	712	-0.0619	NEUTRAL	NA	10	"DNAJB6,ESYT2,LMBR1,MNX1,NCAPG2,NOM1,PTPRN2,UBE3C,VIPR2,WDR60"
TCGA.AA.3509.01A	7	156589036	158936978	162	-0.4171	NEUTRAL	NA	10	"DNAJB6,ESYT2,LMBR1,MNX1,NCAPG2,NOM1,PTPRN2,UBE3C,VIPR2,WDR60"
TCGA.AG.3891.01A	7	156626365	157341589	44	0.0982	NEUTRAL	NA	6	"DNAJB6,LMBR1,MNX1,NOM1,PTPRN2,UBE3C"
TCGA.CK.5914.01A	7	156742763	156761731	10	-0.4463	NEUTRAL	NA	1	NOM1
TCGA.AG.4009.01A	7	156742763	156798227	12	-0.4275	NEUTRAL	NA	2	"MNX1,NOM1"
TCGA.AA.A00O.01A	7	156746755	158935086	131	-0.3405	NEUTRAL	NA	9	"DNAJB6,ESYT2,MNX1,NCAPG2,NOM1,PTPRN2,UBE3C,VIPR2,WDR60"
TCGA.AG.3909.01A	7	156752535	156762215	8	0.1158	NEUTRAL	NA	1	NOM1
TCGA.AG.3906.01A	7	156755685	157366974	40	0.1194	NEUTRAL	NA	5	"DNAJB6,MNX1,NOM1,PTPRN2,UBE3C"
TCGA.CK.5914.01A	7	156762215	157041034	22	0.3764	NEUTRAL	NA	3	"MNX1,NOM1,UBE3C"
TCGA.AA.A01Q.01A	7	156799136	157202442	32	0.0863	NEUTRAL	NA	3	"DNAJB6,MNX1,UBE3C"
TCGA.AA.A010.01A	7	156931903	158936978	143	0.1715	NEUTRAL	NA	7	"DNAJB6,ESYT2,NCAPG2,PTPRN2,UBE3C,VIPR2,WDR60"
TCGA.AG.4009.01A	7	156956430	157178184	28	0.3354	NEUTRAL	NA	2	"DNAJB6,UBE3C"
TCGA.AF.3914.01A	7	156956430	158935086	127	0.0973	NEUTRAL	NA	7	"DNAJB6,ESYT2,NCAPG2,PTPRN2,UBE3C,VIPR2,WDR60"
TCGA.AA.A02E.01A	7	157015916	158935086	108	-0.4407	NEUTRAL	NA	7	"DNAJB6,ESYT2,NCAPG2,PTPRN2,UBE3C,VIPR2,WDR60"
TCGA.AG.3909.01A	7	157046621	157177526	9	0.2386	NEUTRAL	NA	2	"DNAJB6,UBE3C"
TCGA.CK.5914.01A	7	157046621	158590604	83	-0.2366	NEUTRAL	NA	5	"DNAJB6,ESYT2,NCAPG2,PTPRN2,UBE3C"
TCGA.AG.3909.01A	7	157178184	158494455	47	-0.3132	NEUTRAL	NA	3	"DNAJB6,NCAPG2,PTPRN2"
TCGA.AG.4009.01A	7	157208663	157475386	11	-0.3536	NEUTRAL	NA	2	"DNAJB6,PTPRN2"
TCGA.AA.3967.01A	7	157208663	158935086	100	0.2471	NEUTRAL	NA	6	"DNAJB6,ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AG.3611.01A	7	157341589	158457171	24	-0.0881	NEUTRAL	NA	2	"NCAPG2,PTPRN2"
TCGA.AG.3891.01A	7	157361528	158935086	98	-0.241	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AG.3906.01A	7	157369253	158935086	94	-0.2982	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AA.3660	7	157452853	159119219	479	0.2435	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.CK.4947	7	157505659	159046948	445	0.2533	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AA.3864	7	157534104	159119219	450	0.124	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AA.3866	7	157535976	159119219	449	0.1167	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AG.4009.01A	7	157691296	158935086	87	0.2364	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AA.3688	7	157756399	159119219	379	-0.0162	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AA.A01Q.01A	7	157903474	158936978	49	-0.0508	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.DM.A1DB	7	157975406	158136985	42	-0.0985	NEUTRAL	NA	1	PTPRN2
TCGA.5M.AAT5	7	158139850	159119219	272	-0.0849	NEUTRAL	NA	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AM.5820	7	158392720	159119219	214	0.1077	NEUTRAL	NA	4	"ESYT2,NCAPG2,VIPR2,WDR60"
TCGA.AG.A01W.01A	7	158407788	158419819	7	-0.4085	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	7	158427360	158627869	12	0.3694	NEUTRAL	NA	2	"ESYT2,NCAPG2"
TCGA.AG.3611.01A	7	158526819	158935086	32	0.2205	NEUTRAL	NA	3	"ESYT2,VIPR2,WDR60"
TCGA.AA.A01I.01A	7	158536189	158935086	47	-0.384	NEUTRAL	NA	3	"ESYT2,VIPR2,WDR60"
TCGA.AG.3909.01A	7	158590604	158935086	35	-0.3556	NEUTRAL	NA	3	"ESYT2,VIPR2,WDR60"
TCGA.AA.A024.01A	7	158706880	158935086	21	0.3414	NEUTRAL	NA	2	"VIPR2,WDR60"
TCGA.CK.5914.01A	7	158734574	158936978	17	-0.3345	NEUTRAL	NA	2	"VIPR2,WDR60"
TCGA.AA.3980.01A	7	158828575	158936978	11	-0.2144	NEUTRAL	NA	1	VIPR2
TCGA.AG.3591	7	159046426	159119219	19	0.1087	NEUTRAL	NA	0	None
TCGA.DM.A28F	7	159046948	159119219	16	-0.0136	NEUTRAL	NA	0	None
TCGA.AA.3982	7	159054560	159055700	5	-0.3739	NEUTRAL	NA	0	None
TCGA.AA.3850	7	159067014	159119219	10	0.16225	NEUTRAL	NA	0	None
TCGA.AA.3982	7	159067014	159119219	10	0.3715	NEUTRAL	NA	0	None
TCGA.CK.4947	7	159067014	159119219	10	-0.0406	NEUTRAL	NA	0	None
TCGA.AA.3850	8	164983	226838	36	0.11455	NEUTRAL	NA	1	ZNF596
TCGA.D5.5540	8	164983	380769	107	-0.0985	NEUTRAL	NA	2	"FBXO25,ZNF596"
TCGA.CK.5912	8	164983	492898	156	0.0843	NEUTRAL	NA	3	"FBXO25,TDRP,ZNF596"
TCGA.DC.6682	8	164983	893452	290	-0.2	NEUTRAL	NA	4	"ERICH1,FBXO25,TDRP,ZNF596"
TCGA.QG.A5Z2	8	164983	970266	310	-0.0467	NEUTRAL	NA	4	"ERICH1,FBXO25,TDRP,ZNF596"
TCGA.CM.5868	8	164983	1251834	457	-0.3057	NEUTRAL	NA	4	"ERICH1,FBXO25,TDRP,ZNF596"
TCGA.A6.6649	8	164983	1459231	547	0.1691	NEUTRAL	NA	5	"DLGAP2,ERICH1,FBXO25,TDRP,ZNF596"
TCGA.AA.3548	8	164983	1615693	626	0.1749	NEUTRAL	NA	5	"DLGAP2,ERICH1,FBXO25,TDRP,ZNF596"
TCGA.CM.6168	8	164983	1729216	669	0.1892	NEUTRAL	NA	6	"CLN8,DLGAP2,ERICH1,FBXO25,TDRP,ZNF596"
TCGA.AA.3516	8	164983	2011214	800	0.0263	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AD.6890	8	164983	2055437	837	-0.0535	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A1HB	8	164983	2118987	865	-0.0045	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AF.A56K	8	164983	2133374	903	-0.2462	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3819	8	164983	2164711	923	0.0058	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3848	8	164983	2178595	926	-0.0056	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AF.6136	8	164983	2201384	928	-0.4327	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3678	8	164983	2205101	929	-0.5091	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3872	8	164983	2205101	927	-0.1273	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AF.2692	8	164983	2205101	929	-0.4977	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AG.3728	8	164983	2205101	929	-0.3692	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3664	8	164983	2205949	930	-0.0101	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.A6.6653	8	164983	2294788	948	-0.0622	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3844	8	164983	2550491	1075	0.106	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.F5.6465	8	164983	2680048	1155	0.3312	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3989	8	164983	2696948	1158	0.0969	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.CK.5913	8	164983	3164484	1487	0.3737	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.EI.7004	8	164983	3655934	1966	-0.3876	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A1DB	8	164983	3666097	1976	-0.115	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3684	8	164983	3677824	1994	-0.1843	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.G4.6304	8	164983	3719975	2024	0.0877	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AG.3612	8	164983	3731966	2035	-0.1692	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.EI.6506	8	164983	3773934	2090	-0.0294	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A1D4	8	164983	3776863	2093	-0.0332	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.EI.6512	8	164983	3776863	2093	-0.0397	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.D5.6532	8	164983	3906161	2241	-0.0692	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.D5.6931	8	164983	3906161	2241	-0.0468	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3968	8	164983	3986245	2340	-0.0641	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3858	8	164983	4209396	2619	-0.2203	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AZ.4682	8	164983	4665648	2985	0.2699	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AY.A8YK	8	164983	4728982	3038	-0.4844	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.CM.6172	8	164983	4935363	3218	-0.0014	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3864	8	164983	5553099	3710	0.0032	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A280	8	164983	5594131	3748	-0.0151	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3680	8	164983	5899513	4010	-0.0082	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.NH.A6GC	8	164983	6000753	4098	-0.0386	NEUTRAL	NA	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.A6.6780	8	164983	6427513	4483	-0.0324	NEUTRAL	NA	12	"ANGPT2,ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,ZNF596"
TCGA.A6.5659	8	164983	6432664	4117	0.0199	NEUTRAL	NA	12	"ANGPT2,ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,ZNF596"
TCGA.F4.6809	8	164983	7011074	4837	0.0038	NEUTRAL	NA	21	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,XKR5,ZNF596"
TCGA.AG.3885	8	164983	8087143	4847	-0.0602	NEUTRAL	NA	43	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,PRR23D1,PRR23D2,SPAG11A,SPAG11B,TDRP,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF596,ZNF705B,ZNF705G"
TCGA.AM.5820	8	164983	8092024	4840	-0.001	NEUTRAL	NA	43	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,PRR23D1,PRR23D2,SPAG11A,SPAG11B,TDRP,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF596,ZNF705B,ZNF705G"
TCGA.AY.6196	8	164983	9380131	5556	-0.4088	NEUTRAL	NA	48	"AGPAT5,ANGPT2,ARHGEF10,CLDN23,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FBXO25,KBTBD11,MCPH1,MFHAS1,MYOM2,PPP1R3B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,TDRP,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF596,ZNF705B,ZNF705G"
TCGA.AA.3518	8	164983	10162380	5952	-0.0232	NEUTRAL	NA	50	"AGPAT5,ANGPT2,ARHGEF10,CLDN23,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FBXO25,KBTBD11,MCPH1,MFHAS1,MSRA,MYOM2,PPP1R3B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF596,ZNF705B,ZNF705G"
TCGA.CM.6679	8	164983	10578971	6196	-0.46825	NEUTRAL	NA	53	"AGPAT5,ANGPT2,ARHGEF10,C8orf74,CLDN23,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FBXO25,KBTBD11,MCPH1,MFHAS1,MSRA,MYOM2,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF596,ZNF705B,ZNF705G"
TCGA.5M.AAT6	8	164983	10907820	6392	-0.2474	NEUTRAL	NA	56	"AGPAT5,ANGPT2,ARHGEF10,C8orf74,CLDN23,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FBXO25,KBTBD11,MCPH1,MFHAS1,MSRA,MYOM2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705G"
TCGA.AA.3972	8	164983	10944615	6406	0.054	NEUTRAL	NA	56	"AGPAT5,ANGPT2,ARHGEF10,C8orf74,CLDN23,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FBXO25,KBTBD11,MCPH1,MFHAS1,MSRA,MYOM2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705G"
TCGA.AA.3522	8	164983	11034858	6441	0.2506	NEUTRAL	NA	56	"AGPAT5,ANGPT2,ARHGEF10,C8orf74,CLDN23,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FBXO25,KBTBD11,MCPH1,MFHAS1,MSRA,MYOM2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705G"
TCGA.CM.4747	8	164983	11859739	6838	0.269	NEUTRAL	NA	67	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FAM167A,FBXO25,FDFT1,GATA4,KBTBD11,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705G"
TCGA.D5.6930	8	164983	11859739	6832	-0.0241	NEUTRAL	NA	67	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FAM167A,FBXO25,FDFT1,GATA4,KBTBD11,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705G"
TCGA.G4.6322	8	164983	11859739	6841	-0.0116	NEUTRAL	NA	67	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FAM167A,FBXO25,FDFT1,GATA4,KBTBD11,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705G"
TCGA.F4.6461	8	164983	11934659	6836	-0.0084	NEUTRAL	NA	69	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FAM167A,FBXO25,FDFT1,GATA4,KBTBD11,LOC100133267,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705G"
TCGA.CI.6621	8	164983	12473557	6836	-0.3833	NEUTRAL	NA	74	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,LOC100133267,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.A6.2672	8	164983	12873413	7017	-0.2706	NEUTRAL	NA	76	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AY.A71X	8	164983	12913776	7065	-0.0223	NEUTRAL	NA	76	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.EI.6885	8	164983	13200603	7208	-0.2337	NEUTRAL	NA	77	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3982	8	164983	13241172	7244	-0.456	NEUTRAL	NA	77	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.F4.6459	8	164983	13390923	7332	-0.0644	NEUTRAL	NA	77	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AG.3602	8	164983	13603475	7441	-0.0345	NEUTRAL	NA	78	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3517	8	164983	14524388	7967	-0.3226	NEUTRAL	NA	79	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.DC.5337	8	164983	15401177	8333	-0.0252	NEUTRAL	NA	80	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.DY.A1DF	8	164983	15401177	8368	0.3452	NEUTRAL	NA	80	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3856	8	164983	15968146	8708	-0.3929	NEUTRAL	NA	81	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSR1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3875	8	164983	16358937	8858	0.1273	NEUTRAL	NA	81	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSR1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.DM.A288	8	164983	17010297	9137	-0.043	NEUTRAL	NA	83	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,FGF20,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MICU3,MSR1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.A6.A566	8	164983	18072808	9742	-0.0066	NEUTRAL	NA	94	"AGPAT5,ANGPT2,ARHGEF10,ASAH1,BLK,C8orf48,C8orf74,CLDN23,CLN8,CNOT7,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,FGF20,FGL1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,MYOM2,NAT1,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SLC7A2,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,VPS37A,XKR5,XKR6,ZDHHC2,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.CM.6678	8	164983	18849507	10224	0.026	NEUTRAL	NA	96	"AGPAT5,ANGPT2,ARHGEF10,ASAH1,BLK,C8orf48,C8orf74,CLDN23,CLN8,CNOT7,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,FGF20,FGL1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,MYOM2,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,PSD3,RP1L1,SGCZ,SGK223,SLC35G5,SLC7A2,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,VPS37A,XKR5,XKR6,ZDHHC2,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.A6.5666	8	164983	19626593	10670	0.253	NEUTRAL	NA	98	"AGPAT5,ANGPT2,ARHGEF10,ASAH1,BLK,C8orf48,C8orf74,CLDN23,CLN8,CNOT7,CSGALNACT1,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,FGF20,FGL1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,MYOM2,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,PSD3,RP1L1,SGCZ,SGK223,SH2D4A,SLC35G5,SLC7A2,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,VPS37A,XKR5,XKR6,ZDHHC2,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.D5.6932	8	164983	21341175	11562	-0.2705	NEUTRAL	NA	103	Too-Many
TCGA.AZ.6601	8	164983	21693220	11701	-0.0146	NEUTRAL	NA	104	Too-Many
TCGA.AH.6643	8	164983	22464319	11854	0.2907	NEUTRAL	NA	125	Too-Many
TCGA.AA.3532	8	164983	23759167	12363	-0.2812	NEUTRAL	NA	141	Too-Many
TCGA.F4.6460	8	164983	24900608	12791	-0.1955	NEUTRAL	NA	146	Too-Many
TCGA.AZ.6599	8	164983	26013790	13230	-0.006	NEUTRAL	NA	151	Too-Many
TCGA.CM.6676	8	164983	27638396	13887	-0.2653	NEUTRAL	NA	165	Too-Many
TCGA.AG.3882	8	164983	27752629	13999	-0.0331	NEUTRAL	NA	167	Too-Many
TCGA.CI.6624	8	164983	28217975	14206	-0.3885	NEUTRAL	NA	171	Too-Many
TCGA.AA.3854	8	164983	28227143	14243	-0.3229	NEUTRAL	NA	171	Too-Many
TCGA.D5.6541	8	164983	30221350	14836	-0.4875	NEUTRAL	NA	182	Too-Many
TCGA.CM.5348	8	164983	30849739	14985	-0.4871	NEUTRAL	NA	189	Too-Many
TCGA.G4.6315	8	164983	32997155	15803	-0.4397	NEUTRAL	NA	192	Too-Many
TCGA.CM.5863	8	164983	33103059	15794	0.1112	NEUTRAL	NA	192	Too-Many
TCGA.AY.4070	8	164983	33269630	15799	-0.3584	NEUTRAL	NA	193	Too-Many
TCGA.CA.5254	8	164983	33802685	15938	0.3161	NEUTRAL	NA	197	Too-Many
TCGA.CM.5349	8	164983	34322405	16139	-0.4478	NEUTRAL	NA	197	Too-Many
TCGA.DC.4749	8	164983	34584840	16213	-0.3378	NEUTRAL	NA	197	Too-Many
TCGA.AA.A03J	8	164983	34618818	15869	-0.3083	NEUTRAL	NA	197	Too-Many
TCGA.DC.6154	8	164983	34875531	16264	-0.1052	NEUTRAL	NA	197	Too-Many
TCGA.F5.6464	8	164983	34976127	16332	-0.4286	NEUTRAL	NA	197	Too-Many
TCGA.AZ.6600	8	164983	35196416	16353	-0.3959	NEUTRAL	NA	198	Too-Many
TCGA.F4.6463	8	164983	35231703	16365	-0.4678	NEUTRAL	NA	198	Too-Many
TCGA.G4.6311	8	164983	35532233	16453	-0.3534	NEUTRAL	NA	198	Too-Many
TCGA.D5.6898	8	164983	35935824	16493	-0.4169	NEUTRAL	NA	198	Too-Many
TCGA.AG.3881	8	164983	36547312	16622	-0.3208	NEUTRAL	NA	198	Too-Many
TCGA.AA.3681	8	164983	36638338	16645	-0.5081	NEUTRAL	NA	198	Too-Many
TCGA.AG.3902	8	164983	36657827	16598	-0.4428	NEUTRAL	NA	199	Too-Many
TCGA.A6.2681	8	164983	36661685	16630	-0.5046	NEUTRAL	NA	199	Too-Many
TCGA.EI.6884	8	164983	36744016	16609	-0.2767	NEUTRAL	NA	199	Too-Many
TCGA.G4.6320	8	164983	37161800	16826	-0.2638	NEUTRAL	NA	199	Too-Many
TCGA.DM.A1D7	8	164983	37328842	16883	-0.254	NEUTRAL	NA	199	Too-Many
TCGA.AZ.6607	8	164983	37738902	16905	-0.1082	NEUTRAL	NA	205	Too-Many
TCGA.AA.3495	8	164983	37834311	16946	-0.4985	NEUTRAL	NA	207	Too-Many
TCGA.A6.5667	8	164983	38024622	16963	-0.4197	NEUTRAL	NA	211	Too-Many
TCGA.DY.A1DG	8	164983	38133792	16982	-0.0848	NEUTRAL	NA	215	Too-Many
TCGA.CI.6623	8	164983	38160042	16956	0.2085	NEUTRAL	NA	215	Too-Many
TCGA.G5.6235	8	164983	38741174	17115	0.0231	NEUTRAL	NA	219	Too-Many
TCGA.AA.3869	8	164983	39206994	17166	-0.4792	NEUTRAL	NA	224	Too-Many
TCGA.AG.3883	8	164983	39869924	17321	-0.3361	NEUTRAL	NA	228	Too-Many
TCGA.F5.6863	8	164983	40811967	17726	-0.3863	NEUTRAL	NA	230	Too-Many
TCGA.D5.6929	8	164983	40880500	17748	-0.0432	NEUTRAL	NA	230	Too-Many
TCGA.CI.6619	8	164983	40933985	17748	0.1191	NEUTRAL	NA	230	Too-Many
TCGA.AZ.6605	8	164983	40963722	17731	-0.3439	NEUTRAL	NA	230	Too-Many
TCGA.F4.6805	8	164983	41054255	17793	-0.4532	NEUTRAL	NA	230	Too-Many
TCGA.AM.5821	8	164983	41081637	17768	-0.0885	NEUTRAL	NA	230	Too-Many
TCGA.A6.2674	8	164983	41257911	17869	-0.198	NEUTRAL	NA	231	Too-Many
TCGA.AG.A020	8	164983	41311867	17884	-0.2536	NEUTRAL	NA	231	Too-Many
TCGA.AG.4015	8	164983	41319600	17860	-0.4879	NEUTRAL	NA	231	Too-Many
TCGA.NH.A50U	8	164983	41319600	17897	-0.5026	NEUTRAL	NA	231	Too-Many
TCGA.A6.5657	8	164983	41580606	17927	-0.2473	NEUTRAL	NA	236	Too-Many
TCGA.D5.6534	8	164983	41613495	17962	-0.2468	NEUTRAL	NA	236	Too-Many
TCGA.A6.6142	8	164983	41727735	18049	-0.3272	NEUTRAL	NA	236	Too-Many
TCGA.AF.2690	8	164983	41744610	18050	-0.2882	NEUTRAL	NA	236	Too-Many
TCGA.A6.2685	8	164983	41870249	18026	-0.0017	NEUTRAL	NA	237	Too-Many
TCGA.AG.3731	8	164983	42383083	18175	0.0123	NEUTRAL	NA	244	Too-Many
TCGA.AF.2691	8	164983	42599488	18194	-0.3211	NEUTRAL	NA	246	Too-Many
TCGA.G4.6307	8	164983	42852443	18224	-0.0379	NEUTRAL	NA	250	Too-Many
TCGA.AG.3890	8	164983	43253797	18200	-0.2514	NEUTRAL	NA	254	Too-Many
TCGA.AA.3956	8	164983	43455242	18257	-0.4797	NEUTRAL	NA	254	Too-Many
TCGA.AA.3866	8	164983	43679529	18277	-0.314	NEUTRAL	NA	254	Too-Many
TCGA.AG.A02N	8	164983	43762680	18271	-0.0096	NEUTRAL	NA	254	Too-Many
TCGA.AA.3851	8	164983	43778913	18276	-0.4994	NEUTRAL	NA	254	Too-Many
TCGA.AA.3976	8	164983	43778913	18278	-0.5084	NEUTRAL	NA	254	Too-Many
TCGA.CM.5341	8	164983	43778913	18281	0.0201	NEUTRAL	NA	254	Too-Many
TCGA.DC.5869	8	164983	46924210	18241	-0.2073	NEUTRAL	NA	254	Too-Many
TCGA.AA.3955	8	164983	47354617	18302	-0.0018	NEUTRAL	NA	254	Too-Many
TCGA.AG.3580	8	164983	47674608	18368	0	NEUTRAL	NA	254	Too-Many
TCGA.EI.6508	8	164983	48729859	18464	-0.0044	NEUTRAL	NA	257	Too-Many
TCGA.F5.6810	8	164983	49797821	18625	-0.1331	NEUTRAL	NA	260	Too-Many
TCGA.G4.6298	8	164983	49899099	18670	-0.467	NEUTRAL	NA	261	Too-Many
TCGA.AH.6547	8	164983	50177245	18745	-0.0722	NEUTRAL	NA	262	Too-Many
TCGA.AF.2687	8	164983	51725867	19088	-0.0524	NEUTRAL	NA	263	Too-Many
TCGA.A6.2686	8	164983	52532600	19342	-0.0091	NEUTRAL	NA	264	Too-Many
TCGA.SS.A7HO	8	164983	53210597	19633	0.0132	NEUTRAL	NA	266	Too-Many
TCGA.AA.3841	8	164983	56105669	20511	0.0666	NEUTRAL	NA	278	Too-Many
TCGA.CL.5918	8	164983	56984163	20771	0.3247	NEUTRAL	NA	282	Too-Many
TCGA.AA.3842	8	164983	57100148	20835	-0.5144	NEUTRAL	NA	284	Too-Many
TCGA.CM.6167	8	164983	60984212	22075	0.0343	NEUTRAL	NA	294	Too-Many
TCGA.DY.A1H8	8	164983	64461631	23216	-0.0191	NEUTRAL	NA	303	Too-Many
TCGA.CA.6718	8	164983	66712107	23585	-0.0122	NEUTRAL	NA	308	Too-Many
TCGA.AD.6548	8	164983	79450648	27238	-0.0112	NEUTRAL	NA	357	Too-Many
TCGA.EI.6881	8	164983	84737371	28575	0	NEUTRAL	NA	376	Too-Many
TCGA.AG.3598	8	164983	93346830	30494	-0.0094	NEUTRAL	NA	407	Too-Many
TCGA.AA.3695	8	164983	95686849	31196	0.2644	NEUTRAL	NA	419	Too-Many
TCGA.CM.6161	8	164983	95793552	31145	0.3275	NEUTRAL	NA	420	Too-Many
TCGA.AA.3831	8	164983	101582666	32822	-0.0026	NEUTRAL	NA	452	Too-Many
TCGA.T9.A92H	8	164983	119267495	37885	0.0159	NEUTRAL	NA	498	Too-Many
TCGA.AA.3527	8	164983	122871163	39130	0.0076	NEUTRAL	NA	511	Too-Many
TCGA.AA.3715	8	164983	123728685	39444	0.1763	NEUTRAL	NA	511	Too-Many
TCGA.DM.A0XD	8	164983	128547941	41122	0.0008	NEUTRAL	NA	538	Too-Many
TCGA.CK.6751	8	164983	131517708	42140	0.0012	NEUTRAL	NA	542	Too-Many
TCGA.A6.5665	8	164983	140266130	46225	0	NEUTRAL	NA	559	Too-Many
TCGA.AA.3530	8	164983	140597861	46472	-0.0067	NEUTRAL	NA	559	Too-Many
TCGA.NH.A50T	8	164983	140952294	46376	0.1933	NEUTRAL	NA	561	Too-Many
TCGA.AD.6889	8	164983	142584956	47091	0.0086	NEUTRAL	NA	569	Too-Many
TCGA.A6.6782	8	164983	142928396	47056	0.0104	NEUTRAL	NA	569	Too-Many
TCGA.CA.5256	8	164983	145682114	47300	0.315	NEUTRAL	NA	636	Too-Many
TCGA.3L.AA1B	8	164983	146293413	47744	0.1747	NEUTRAL	NA	655	Too-Many
TCGA.5M.AATE	8	164983	146293413	47775	0.0936	NEUTRAL	NA	655	Too-Many
TCGA.A6.2679	8	164983	146293413	47725	-0.3194	NEUTRAL	NA	655	Too-Many
TCGA.A6.2682	8	164983	146293413	46921	0.1446	NEUTRAL	NA	655	Too-Many
TCGA.A6.2684	8	164983	146293413	43846	5.00E-04	NEUTRAL	NA	655	Too-Many
TCGA.A6.3809	8	164983	146293413	43858	-0.002	NEUTRAL	NA	655	Too-Many
TCGA.A6.4105	8	164983	146293413	47787	-0.0318	NEUTRAL	NA	655	Too-Many
TCGA.A6.4107	8	164983	146293413	47744	0.1873	NEUTRAL	NA	655	Too-Many
TCGA.A6.5664	8	164983	146293413	47640	0.0008	NEUTRAL	NA	655	Too-Many
TCGA.A6.6138	8	164983	146293413	47786	0.0026	NEUTRAL	NA	655	Too-Many
TCGA.A6.6141	8	164983	146293413	47748	0.0049	NEUTRAL	NA	655	Too-Many
TCGA.A6.6651	8	164983	146293413	47561	0.0852	NEUTRAL	NA	655	Too-Many
TCGA.A6.6654	8	164983	146293413	47649	0.0347	NEUTRAL	NA	655	Too-Many
TCGA.A6.6781	8	164983	146293413	43763	-0.0042	NEUTRAL	NA	655	Too-Many
TCGA.A6.A565	8	164983	146293413	47451	-0.0011	NEUTRAL	NA	655	Too-Many
TCGA.AA.3489	8	164983	146293413	47624	-0.0079	NEUTRAL	NA	655	Too-Many
TCGA.AA.3492	8	164983	146293413	47750	0.0051	NEUTRAL	NA	655	Too-Many
TCGA.AA.3510	8	164983	146293413	47741	0.0021	NEUTRAL	NA	655	Too-Many
TCGA.AA.3511	8	164983	146293413	47663	0.1574	NEUTRAL	NA	655	Too-Many
TCGA.AA.3519	8	164983	146293413	47755	0	NEUTRAL	NA	655	Too-Many
TCGA.AA.3531	8	164983	146293413	47748	-0.3175	NEUTRAL	NA	655	Too-Many
TCGA.AA.3555	8	164983	146293413	47787	-0.0017	NEUTRAL	NA	655	Too-Many
TCGA.AA.3561	8	164983	146293413	47782	0.0746	NEUTRAL	NA	655	Too-Many
TCGA.AA.3655	8	164983	146293413	47775	-0.0033	NEUTRAL	NA	655	Too-Many
TCGA.AA.3675	8	164983	146293413	47790	0	NEUTRAL	NA	655	Too-Many
TCGA.AA.3693	8	164983	146293413	47798	0	NEUTRAL	NA	655	Too-Many
TCGA.AA.3710	8	164983	146293413	47742	-0.0077	NEUTRAL	NA	655	Too-Many
TCGA.AA.3712	8	164983	146293413	47774	0.2545	NEUTRAL	NA	655	Too-Many
TCGA.AA.3713	8	164983	146293413	47753	0.3355	NEUTRAL	NA	655	Too-Many
TCGA.AA.3812	8	164983	146293413	47800	-0.0132	NEUTRAL	NA	655	Too-Many
TCGA.AA.3814	8	164983	146293413	47794	0.1901	NEUTRAL	NA	655	Too-Many
TCGA.AA.3818	8	164983	146293413	47798	-0.0004	NEUTRAL	NA	655	Too-Many
TCGA.AA.3821	8	164983	146293413	47687	-0.0053	NEUTRAL	NA	655	Too-Many
TCGA.AA.3833	8	164983	146293413	47800	0.0049	NEUTRAL	NA	655	Too-Many
TCGA.AA.3837	8	164983	146293413	47799	0.0151	NEUTRAL	NA	655	Too-Many
TCGA.AA.3845	8	164983	146293413	47695	0.0013	NEUTRAL	NA	655	Too-Many
TCGA.AA.3846	8	164983	146293413	47728	0.2668	NEUTRAL	NA	655	Too-Many
TCGA.AA.3852	8	164983	146293413	47800	0.3565	NEUTRAL	NA	655	Too-Many
TCGA.AA.3855	8	164983	146293413	47698	0.0021	NEUTRAL	NA	655	Too-Many
TCGA.AA.3877	8	164983	146293413	47744	-0.0047	NEUTRAL	NA	655	Too-Many
TCGA.AA.3947	8	164983	146293413	47682	-0.0148	NEUTRAL	NA	655	Too-Many
TCGA.AA.3949	8	164983	146293413	47718	-0.0066	NEUTRAL	NA	655	Too-Many
TCGA.AA.3950	8	164983	146293413	47746	-0.0014	NEUTRAL	NA	655	Too-Many
TCGA.AA.3973	8	164983	146293413	47737	0.0002	NEUTRAL	NA	655	Too-Many
TCGA.AA.3977	8	164983	146293413	47644	-0.0002	NEUTRAL	NA	655	Too-Many
TCGA.AA.3986	8	164983	146293413	47732	-0.0101	NEUTRAL	NA	655	Too-Many
TCGA.AA.3994	8	164983	146293413	47726	1.00E-04	NEUTRAL	NA	655	Too-Many
TCGA.AA.A01P	8	164983	146293413	47711	-0.0023	NEUTRAL	NA	655	Too-Many
TCGA.AA.A01R	8	164983	146293413	47751	-0.0124	NEUTRAL	NA	655	Too-Many
TCGA.AA.A01V	8	164983	146293413	47737	-0.002	NEUTRAL	NA	655	Too-Many
TCGA.AA.A01X	8	164983	146293413	47677	0	NEUTRAL	NA	655	Too-Many
TCGA.AA.A022	8	164983	146293413	47694	0.0167	NEUTRAL	NA	655	Too-Many
TCGA.AA.A02Y	8	164983	146293413	47735	-0.0028	NEUTRAL	NA	655	Too-Many
TCGA.AA.A03F	8	164983	146293413	47750	0.0397	NEUTRAL	NA	655	Too-Many
TCGA.AD.6895	8	164983	146293413	47724	0.0045	NEUTRAL	NA	655	Too-Many
TCGA.AD.6963	8	164983	146293413	47732	0.1806	NEUTRAL	NA	655	Too-Many
TCGA.AD.6964	8	164983	146293413	47729	0.0558	NEUTRAL	NA	655	Too-Many
TCGA.AD.A5EJ	8	164983	146293413	47483	-0.0054	NEUTRAL	NA	655	Too-Many
TCGA.AF.4110	8	164983	146293413	47761	0.0642	NEUTRAL	NA	655	Too-Many
TCGA.AF.5654	8	164983	146293413	47650	-0.009	NEUTRAL	NA	655	Too-Many
TCGA.AF.A56N	8	164983	146293413	47670	0.0121	NEUTRAL	NA	655	Too-Many
TCGA.AG.3575	8	164983	146293413	47784	-0.0132	NEUTRAL	NA	655	Too-Many
TCGA.AG.3581	8	164983	146293413	47783	0.0007	NEUTRAL	NA	655	Too-Many
TCGA.AG.3583	8	164983	146293413	46576	-5.00E-04	NEUTRAL	NA	655	Too-Many
TCGA.AG.3599	8	164983	146293413	47740	0.0322	NEUTRAL	NA	655	Too-Many
TCGA.AG.3725	8	164983	146293413	47723	-0.0683	NEUTRAL	NA	655	Too-Many
TCGA.AG.3878	8	164983	146293413	47797	-0.0059	NEUTRAL	NA	655	Too-Many
TCGA.AG.3892	8	164983	146293413	47637	-0.003	NEUTRAL	NA	655	Too-Many
TCGA.AG.3894	8	164983	146293413	47645	-0.0018	NEUTRAL	NA	655	Too-Many
TCGA.AG.3898	8	164983	146293413	47612	0.1912	NEUTRAL	NA	655	Too-Many
TCGA.AG.3901	8	164983	146293413	47644	-0.016	NEUTRAL	NA	655	Too-Many
TCGA.AG.4022	8	164983	146293413	47780	0.3576	NEUTRAL	NA	655	Too-Many
TCGA.AH.6544	8	164983	146293413	47690	0.2152	NEUTRAL	NA	655	Too-Many
TCGA.AH.6897	8	164983	146293413	47669	-0.0175	NEUTRAL	NA	655	Too-Many
TCGA.AH.6903	8	164983	146293413	47665	0.0008	NEUTRAL	NA	655	Too-Many
TCGA.AU.3779	8	164983	146293413	47768	0.0465	NEUTRAL	NA	655	Too-Many
TCGA.AU.6004	8	164983	146293413	47471	0.2989	NEUTRAL	NA	655	Too-Many
TCGA.AY.4071	8	164983	146293413	47572	0.0066	NEUTRAL	NA	655	Too-Many
TCGA.AY.6386	8	164983	146293413	47744	-0.0022	NEUTRAL	NA	655	Too-Many
TCGA.AY.A69D	8	164983	146293413	47723	-0.3276	NEUTRAL	NA	655	Too-Many
TCGA.AZ.4315	8	164983	146293413	47721	0.0015	NEUTRAL	NA	655	Too-Many
TCGA.AZ.4323	8	164983	146293413	47588	-0.0251	NEUTRAL	NA	655	Too-Many
TCGA.AZ.4616	8	164983	146293413	47642	0.1547	NEUTRAL	NA	655	Too-Many
TCGA.CA.5255	8	164983	146293413	47620	0.1729	NEUTRAL	NA	655	Too-Many
TCGA.CA.5796	8	164983	146293413	47655	-0.0225	NEUTRAL	NA	655	Too-Many
TCGA.CA.6716	8	164983	146293413	47678	0.0166	NEUTRAL	NA	655	Too-Many
TCGA.CA.6717	8	164983	146293413	47586	0.0113	NEUTRAL	NA	655	Too-Many
TCGA.CI.6620	8	164983	146293413	47678	-0.0013	NEUTRAL	NA	655	Too-Many
TCGA.CI.6622	8	164983	146293413	47680	-0.0049	NEUTRAL	NA	655	Too-Many
TCGA.CK.4947	8	164983	146293413	47702	0.0426	NEUTRAL	NA	655	Too-Many
TCGA.CK.4950	8	164983	146293413	47338	-0.0088	NEUTRAL	NA	655	Too-Many
TCGA.CK.4951	8	164983	146293413	47577	-0.0086	NEUTRAL	NA	655	Too-Many
TCGA.CK.5915	8	164983	146293413	47679	0.112	NEUTRAL	NA	655	Too-Many
TCGA.CK.5916	8	164983	146293413	47675	0	NEUTRAL	NA	655	Too-Many
TCGA.CK.6747	8	164983	146293413	47594	0.0007	NEUTRAL	NA	655	Too-Many
TCGA.CK.6748	8	164983	146293413	47688	0.3214	NEUTRAL	NA	655	Too-Many
TCGA.CM.4743	8	164983	146293413	47759	0.0092	NEUTRAL	NA	655	Too-Many
TCGA.CM.4748	8	164983	146293413	47744	0.006	NEUTRAL	NA	655	Too-Many
TCGA.CM.6162	8	164983	146293413	47568	0.0039	NEUTRAL	NA	655	Too-Many
TCGA.CM.6164	8	164983	146293413	47687	0.0075	NEUTRAL	NA	655	Too-Many
TCGA.CM.6171	8	164983	146293413	47767	0.0036	NEUTRAL	NA	655	Too-Many
TCGA.CM.6674	8	164983	146293413	47652	0.001	NEUTRAL	NA	655	Too-Many
TCGA.CM.6677	8	164983	146293413	47575	0.1558	NEUTRAL	NA	655	Too-Many
TCGA.CM.6680	8	164983	146293413	47669	-0.0602	NEUTRAL	NA	655	Too-Many
TCGA.D5.5537	8	164983	146293413	47655	0.0031	NEUTRAL	NA	655	Too-Many
TCGA.D5.6529	8	164983	146293413	47768	0.21	NEUTRAL	NA	655	Too-Many
TCGA.D5.6530	8	164983	146293413	47778	0.0068	NEUTRAL	NA	655	Too-Many
TCGA.D5.6536	8	164983	146293413	47772	0.0033	NEUTRAL	NA	655	Too-Many
TCGA.D5.6539	8	164983	146293413	47659	0	NEUTRAL	NA	655	Too-Many
TCGA.D5.6920	8	164983	146293413	47654	-0.0019	NEUTRAL	NA	655	Too-Many
TCGA.D5.6924	8	164983	146293413	47673	0.2546	NEUTRAL	NA	655	Too-Many
TCGA.D5.6927	8	164983	146293413	47683	-0.003	NEUTRAL	NA	655	Too-Many
TCGA.D5.6928	8	164983	146293413	47674	0.0083	NEUTRAL	NA	655	Too-Many
TCGA.D5.7000	8	164983	146293413	47575	0.3126	NEUTRAL	NA	655	Too-Many
TCGA.DC.6681	8	164983	146293413	47680	0.0096	NEUTRAL	NA	655	Too-Many
TCGA.DM.A1D8	8	164983	146293413	47704	-0.016	NEUTRAL	NA	655	Too-Many
TCGA.DM.A28C	8	164983	146293413	47696	0.0089	NEUTRAL	NA	655	Too-Many
TCGA.DM.A28E	8	164983	146293413	47653	-0.0122	NEUTRAL	NA	655	Too-Many
TCGA.EI.6507	8	164983	146293413	47771	-0.0021	NEUTRAL	NA	655	Too-Many
TCGA.EI.6510	8	164983	146293413	47678	-0.0239	NEUTRAL	NA	655	Too-Many
TCGA.EI.6514	8	164983	146293413	47727	0.0896	NEUTRAL	NA	655	Too-Many
TCGA.EI.6882	8	164983	146293413	47677	-0.0039	NEUTRAL	NA	655	Too-Many
TCGA.EI.6917	8	164983	146293413	47641	0.0018	NEUTRAL	NA	655	Too-Many
TCGA.F4.6569	8	164983	146293413	47783	0.2658	NEUTRAL	NA	655	Too-Many
TCGA.F4.6570	8	164983	146293413	47775	0.156	NEUTRAL	NA	655	Too-Many
TCGA.F4.6703	8	164983	146293413	47686	0.039	NEUTRAL	NA	655	Too-Many
TCGA.F4.6704	8	164983	146293413	47684	-0.1928	NEUTRAL	NA	655	Too-Many
TCGA.F4.6806	8	164983	146293413	47550	0.0027	NEUTRAL	NA	655	Too-Many
TCGA.F4.6807	8	164983	146293413	47641	0.1597	NEUTRAL	NA	655	Too-Many
TCGA.F4.6808	8	164983	146293413	47679	-0.0057	NEUTRAL	NA	655	Too-Many
TCGA.F4.6855	8	164983	146293413	47652	-0.002	NEUTRAL	NA	655	Too-Many
TCGA.F4.6856	8	164983	146293413	47678	-0.0054	NEUTRAL	NA	655	Too-Many
TCGA.F5.6812	8	164983	146293413	47681	-0.0721	NEUTRAL	NA	655	Too-Many
TCGA.F5.6814	8	164983	146293413	47676	0.0304	NEUTRAL	NA	655	Too-Many
TCGA.F5.6861	8	164983	146293413	47664	-0.0047	NEUTRAL	NA	655	Too-Many
TCGA.G4.6293	8	164983	146293413	47745	0.0015	NEUTRAL	NA	655	Too-Many
TCGA.G4.6294	8	164983	146293413	47778	0.0057	NEUTRAL	NA	655	Too-Many
TCGA.G4.6297	8	164983	146293413	47756	0.0784	NEUTRAL	NA	655	Too-Many
TCGA.G4.6302	8	164983	146293413	47752	0.0995	NEUTRAL	NA	655	Too-Many
TCGA.G4.6309	8	164983	146293413	47671	-0.0091	NEUTRAL	NA	655	Too-Many
TCGA.G4.6310	8	164983	146293413	47759	0.0997	NEUTRAL	NA	655	Too-Many
TCGA.G4.6321	8	164983	146293413	47772	-0.0067	NEUTRAL	NA	655	Too-Many
TCGA.G4.6323	8	164983	146293413	47772	-0.0132	NEUTRAL	NA	655	Too-Many
TCGA.G4.6588	8	164983	146293413	47775	0	NEUTRAL	NA	655	Too-Many
TCGA.G4.6625	8	164983	146293413	47767	-0.1311	NEUTRAL	NA	655	Too-Many
TCGA.G4.6628	8	164983	146293413	47655	-0.0057	NEUTRAL	NA	655	Too-Many
TCGA.G5.6572	8	164983	146293413	47690	0.3752	NEUTRAL	NA	655	Too-Many
TCGA.NH.A5IV	8	164983	146293413	47670	-0.0033	NEUTRAL	NA	655	Too-Many
TCGA.NH.A8F7	8	164983	146293413	47589	-0.0072	NEUTRAL	NA	655	Too-Many
TCGA.QG.A5YV	8	164983	146293413	47378	0.0244	NEUTRAL	NA	655	Too-Many
TCGA.QG.A5YW	8	164983	146293413	47455	0.3088	NEUTRAL	NA	655	Too-Many
TCGA.QL.A97D	8	164983	146293413	47757	-0.1343	NEUTRAL	NA	655	Too-Many
TCGA.WS.AB45	8	164983	146293413	47752	0.1639	NEUTRAL	NA	655	Too-Many
TCGA.F5.6811.01A	8	180805	38295495	1809	-0.022	NEUTRAL	NA	217	Too-Many
TCGA.DC.6160.01A	8	180805	146250220	6013	0.0563	NEUTRAL	NA	654	Too-Many
TCGA.AG.A01W.01A	8	180814	38964584	1853	-0.1327	NEUTRAL	NA	223	Too-Many
TCGA.AA.3862.01A	8	190805	385570	9	0.1247	NEUTRAL	NA	2	"FBXO25,ZNF596"
TCGA.CK.5914.01A	8	190805	418658	15	-0.2474	NEUTRAL	NA	2	"FBXO25,ZNF596"
TCGA.AA.3930.01A	8	190805	614542	18	-0.4302	NEUTRAL	NA	4	"ERICH1,FBXO25,TDRP,ZNF596"
TCGA.AA.A010.01A	8	190805	1954688	69	-0.3929	NEUTRAL	NA	8	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,TDRP,ZNF596"
TCGA.AA.A02J.01A	8	190805	2020373	62	-0.0936	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AG.A00C.01A	8	190805	2054000	83	-0.0511	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3967.01A	8	190805	2090221	95	-0.3113	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.CK.4948.01B	8	190805	6264120	173	0.0497	NEUTRAL	NA	11	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,ZNF596"
TCGA.AA.3861.01A	8	190805	6914001	216	-0.2533	NEUTRAL	NA	21	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,XKR5,ZNF596"
TCGA.AG.A008.01A	8	190805	7320189	220	0.0914	NEUTRAL	NA	28	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,SPAG11B,TDRP,USP17L1,USP17L4,XKR5,ZNF596,ZNF705G"
TCGA.DM.A28M.01A	8	190805	7343784	230	-0.1544	NEUTRAL	NA	32	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB106A,DEFB106B,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,SPAG11B,TDRP,USP17L1,USP17L4,XKR5,ZNF596,ZNF705G"
TCGA.AG.3906.01A	8	190805	8654836	242	-0.1573	NEUTRAL	NA	46	"AGPAT5,ANGPT2,ARHGEF10,CLDN23,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MFHAS1,MYOM2,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,TDRP,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF596,ZNF705B,ZNF705G"
TCGA.AZ.4684.01A	8	190805	13251032	418	-0.2007	NEUTRAL	NA	77	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AG.A011.01A	8	190805	14022042	405	0.0816	NEUTRAL	NA	79	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AG.A032.01A	8	190805	18513073	579	-0.0349	NEUTRAL	NA	96	"AGPAT5,ANGPT2,ARHGEF10,ASAH1,BLK,C8orf48,C8orf74,CLDN23,CLN8,CNOT7,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,FGF20,FGL1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,MYOM2,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,PSD3,RP1L1,SGCZ,SGK223,SLC35G5,SLC7A2,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,VPS37A,XKR5,XKR6,ZDHHC2,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AF.3914.01A	8	190805	21890591	718	-0.3713	NEUTRAL	NA	107	Too-Many
TCGA.AG.3891.01A	8	190805	21890591	723	0.1456	NEUTRAL	NA	107	Too-Many
TCGA.AG.A01J.01A	8	190805	22106517	758	-0.4062	NEUTRAL	NA	118	Too-Many
TCGA.AG.A01L.01A	8	190805	22141668	783	-0.0639	NEUTRAL	NA	119	Too-Many
TCGA.AA.3939.01A	8	190805	22418806	868	0.3258	NEUTRAL	NA	122	Too-Many
TCGA.AA.A00O.01A	8	190805	27291542	1116	-0.0632	NEUTRAL	NA	159	Too-Many
TCGA.AA.A017.01A	8	190805	31030498	1425	-0.439	NEUTRAL	NA	191	Too-Many
TCGA.AG.A023.01A	8	190805	31497449	1451	-0.453	NEUTRAL	NA	192	Too-Many
TCGA.AA.3980.01A	8	190805	38097771	1765	-0.501	NEUTRAL	NA	213	Too-Many
TCGA.AA.A01I.01A	8	190805	38107177	1633	-0.1757	NEUTRAL	NA	213	Too-Many
TCGA.AA.A01D.01A	8	190805	38261864	1615	0.1636	NEUTRAL	NA	216	Too-Many
TCGA.AG.A016.01A	8	190805	39607143	1819	-0.1625	NEUTRAL	NA	226	Too-Many
TCGA.DM.A282.01A	8	190805	39634537	1961	-0.0062	NEUTRAL	NA	226	Too-Many
TCGA.AG.A025.01A	8	190805	42178204	1996	-0.1305	NEUTRAL	NA	240	Too-Many
TCGA.AG.A00H.01A	8	190805	43024254	2064	-0.4029	NEUTRAL	NA	253	Too-Many
TCGA.AA.A004.01A	8	190805	43170972	1998	-0.164	NEUTRAL	NA	254	Too-Many
TCGA.A6.3810.01A	8	190805	48736378	2300	-0.2962	NEUTRAL	NA	257	Too-Many
TCGA.AA.A024.01A	8	190805	49637233	2269	0.0024	NEUTRAL	NA	260	Too-Many
TCGA.AA.A01K.01A	8	190805	59518459	2390	-0.3664	NEUTRAL	NA	293	Too-Many
TCGA.AA.A02H.01A	8	190805	101960772	3785	0.0403	NEUTRAL	NA	455	Too-Many
TCGA.AG.A015.01A	8	190805	103301650	3891	-0.154	NEUTRAL	NA	460	Too-Many
TCGA.AA.A029.01A	8	190805	142199048	5114	0.2589	NEUTRAL	NA	565	Too-Many
TCGA.AA.3815.01A	8	190805	146279416	5834	-0.0448	NEUTRAL	NA	655	Too-Many
TCGA.AA.A01C.01A	8	190805	146279416	5432	0.0604	NEUTRAL	NA	655	Too-Many
TCGA.AA.A02R.01A	8	190805	146279416	5197	-0.1015	NEUTRAL	NA	655	Too-Many
TCGA.AY.A54L.01A	8	190805	146279416	6008	0.3375	NEUTRAL	NA	655	Too-Many
TCGA.CM.4744.01A	8	190805	146279416	6025	0.2239	NEUTRAL	NA	655	Too-Many
TCGA.CM.4750.01A	8	190805	146279416	6026	0.3218	NEUTRAL	NA	655	Too-Many
TCGA.CM.6165.01A	8	190805	146279416	6038	0.0185	NEUTRAL	NA	655	Too-Many
TCGA.AA.A01Q.01A	8	192887	2090221	87	-0.3366	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.A00Q.01A	8	192887	2092539	87	0.1305	NEUTRAL	NA	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.A00F.01A	8	192887	6728151	110	-0.3805	NEUTRAL	NA	15	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFB1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,XKR5,ZNF596"
TCGA.AA.A00A.01A	8	192887	7318892	119	0.0325	NEUTRAL	NA	28	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,SPAG11B,TDRP,USP17L1,USP17L4,XKR5,ZNF596,ZNF705G"
TCGA.AA.A00D.01A	8	192887	33342631	1202	-0.152	NEUTRAL	NA	193	Too-Many
TCGA.AA.A01F.01A	8	192887	143998979	4227	0.1174	NEUTRAL	NA	583	Too-Many
TCGA.AA.A00J.01A	8	192887	146279416	4440	-0.0098	NEUTRAL	NA	655	Too-Many
TCGA.AA.A00K.01A	8	192887	146279416	4459	0.337	NEUTRAL	NA	655	Too-Many
TCGA.AF.2689	8	208833	53200553	19600	-0.4154	NEUTRAL	NA	265	Too-Many
TCGA.AA.A00N.01A	8	381299	1904883	60	-0.5103	NEUTRAL	NA	6	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,TDRP"
TCGA.D5.5540	8	397208	821584	162	0.376	NEUTRAL	NA	3	"ERICH1,FBXO25,TDRP"
TCGA.AA.A00L.01A	8	408317	1791494	15	0.2004	NEUTRAL	NA	6	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,TDRP"
TCGA.G4.6303	8	719042	1244223	220	-0.4352	NEUTRAL	NA	0	None
TCGA.D5.5540	8	838418	2853256	1002	-0.0417	NEUTRAL	NA	6	"ARHGEF10,CLN8,CSMD1,DLGAP2,KBTBD11,MYOM2"
TCGA.AG.3893	8	856021	902063	13	0.3111	NEUTRAL	NA	0	None
TCGA.QG.A5Z2	8	982866	1133246	67	-0.0621	NEUTRAL	NA	0	None
TCGA.QG.A5Z2	8	1164973	1293630	74	-0.1319	NEUTRAL	NA	0	None
TCGA.QG.A5Z2	8	1315885	142574238	46319	0.0054	NEUTRAL	NA	565	Too-Many
TCGA.AA.3662	8	1373625	2121443	384	0.2609	NEUTRAL	NA	5	"ARHGEF10,CLN8,DLGAP2,KBTBD11,MYOM2"
TCGA.A6.6649	8	1462443	146293413	47225	0.2386	NEUTRAL	NA	651	Too-Many
TCGA.AG.4009.01A	8	1574859	6783337	180	-0.4894	NEUTRAL	NA	12	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA6,DEFB1,DLGAP2,KBTBD11,MCPH1,MYOM2,XKR5"
TCGA.CM.6168	8	1732755	1821515	25	-0.2835	NEUTRAL	NA	2	"ARHGEF10,CLN8"
TCGA.AA.3930.01A	8	1806114	6735268	173	-0.4835	NEUTRAL	NA	9	"AGPAT5,ANGPT2,ARHGEF10,CSMD1,DEFB1,KBTBD11,MCPH1,MYOM2,XKR5"
TCGA.CM.6168	8	1822899	38387390	16309	0.2216	NEUTRAL	NA	212	Too-Many
TCGA.AA.A00Z.01A	8	1952688	144875098	91	-0.1091	NEUTRAL	NA	600	Too-Many
TCGA.AA.3966	8	1996558	2178595	147	-0.02	NEUTRAL	NA	1	MYOM2
TCGA.AA.3516	8	2016052	128189373	40243	-0.0087	NEUTRAL	NA	529	Too-Many
TCGA.AZ.6598	8	2039436	2316905	156	-0.1073	NEUTRAL	NA	1	MYOM2
TCGA.AD.6890	8	2062245	146293413	46888	-0.005	NEUTRAL	NA	647	Too-Many
TCGA.AA.A00N.01A	8	2088596	2092539	5	-0.3965	NEUTRAL	NA	1	MYOM2
TCGA.AG.A00C.01A	8	2088596	2806763	8	-2.00E-04	NEUTRAL	NA	2	"CSMD1,MYOM2"
TCGA.AG.3909.01A	8	2091255	3855387	68	-0.1879	NEUTRAL	NA	2	"CSMD1,MYOM2"
TCGA.AA.A01Q.01A	8	2091255	20054876	386	0.0953	NEUTRAL	NA	94	"AGPAT5,ANGPT2,ASAH1,ATP6V1B2,BLK,C8orf48,C8orf74,CLDN23,CNOT7,CSGALNACT1,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,FGL1,GATA4,INTS10,KIAA1456,LOC100133267,LONRF1,LPL,MCPH1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,MYOM2,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,PSD3,RP1L1,SGCZ,SGK223,SH2D4A,SLC18A1,SLC35G5,SLC7A2,SOX7,SPAG11A,SPAG11B,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,VPS37A,XKR5,XKR6,ZDHHC2,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3811	8	2108038	5121354	2459	0.1398	NEUTRAL	NA	1	CSMD1
TCGA.AA.3662	8	2124279	22954304	11140	-0.5068	NEUTRAL	NA	121	Too-Many
TCGA.DM.A1HB	8	2130232	3579293	948	-0.0293	NEUTRAL	NA	1	CSMD1
TCGA.AF.A56K	8	2142455	62437041	21618	-0.0438	NEUTRAL	NA	290	Too-Many
TCGA.D5.6926	8	2206485	31630513	14286	-0.4954	NEUTRAL	NA	183	Too-Many
TCGA.AA.3850	8	2220775	2755069	275	0.08245	NEUTRAL	NA	0	None
TCGA.AF.2692	8	2220775	3776863	1162	-0.5058	NEUTRAL	NA	1	CSMD1
TCGA.AF.6136	8	2220775	32862936	14819	-0.3346	NEUTRAL	NA	183	Too-Many
TCGA.AA.3678	8	2220775	34580937	15287	-0.5041	NEUTRAL	NA	188	Too-Many
TCGA.AG.3728	8	2220775	43396559	17352	-0.3605	NEUTRAL	NA	245	Too-Many
TCGA.AA.3848	8	2247093	2567182	152	-0.0283	NEUTRAL	NA	0	None
TCGA.AA.3872	8	2247093	12901472	6121	-0.225	NEUTRAL	NA	67	"AGPAT5,ANGPT2,BLK,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3664	8	2247093	13525310	6492	-0.0491	NEUTRAL	NA	69	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3819	8	2247093	22464319	10944	-0.02	NEUTRAL	NA	116	Too-Many
TCGA.A6.5661	8	2292516	140247494	45271	0	NEUTRAL	NA	550	Too-Many
TCGA.A6.6653	8	2297073	9053913	4410	-0.0394	NEUTRAL	NA	39	"AGPAT5,ANGPT2,CLDN23,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,ERI1,MCPH1,MFHAS1,PPP1R3B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF705B,ZNF705G"
TCGA.AA.3984	8	2357033	55443426	19279	-0.0257	NEUTRAL	NA	267	Too-Many
TCGA.AA.3844	8	2552872	6005109	3026	-0.2397	NEUTRAL	NA	1	CSMD1
TCGA.AA.3848	8	2579882	7011074	3756	-0.0593	NEUTRAL	NA	12	"AGPAT5,ANGPT2,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,MCPH1,XKR5"
TCGA.F5.6465	8	2688064	146293413	46625	0.3504	NEUTRAL	NA	646	Too-Many
TCGA.AA.3989	8	2697279	146293413	46578	-0.2572	NEUTRAL	NA	646	Too-Many
TCGA.AA.3850	8	2772310	2803336	27	0.36135	NEUTRAL	NA	1	CSMD1
TCGA.AH.6549.01A	8	2796055	42227320	2036	-0.0352	NEUTRAL	NA	232	Too-Many
TCGA.AA.A010.01A	8	2799962	2857438	17	-0.1633	NEUTRAL	NA	1	CSMD1
TCGA.AA.3941	8	2803843	2811707	12	-0.5044	NEUTRAL	NA	1	CSMD1
TCGA.AG.A00C.01A	8	2807701	4277426	64	-0.3833	NEUTRAL	NA	1	CSMD1
TCGA.AA.3850	8	2811707	3248755	302	0.25405	NEUTRAL	NA	1	CSMD1
TCGA.CK.5914.01A	8	2944610	3071971	20	-0.1591	NEUTRAL	NA	1	CSMD1
TCGA.AA.A010.01A	8	3076740	3611420	24	0.0012	NEUTRAL	NA	1	CSMD1
TCGA.AA.3966	8	3243397	3776863	538	-0.035	NEUTRAL	NA	1	CSMD1
TCGA.AA.3850	8	3252113	3287681	26	-0.25455	NEUTRAL	NA	1	CSMD1
TCGA.AA.3941	8	3264738	5884045	2428	0.2807	NEUTRAL	NA	1	CSMD1
TCGA.D5.5541	8	3307483	5573375	2144	-0.3785	NEUTRAL	NA	1	CSMD1
TCGA.AA.3850	8	3325726	3432859	91	-0.20535	NEUTRAL	NA	1	CSMD1
TCGA.AA.3850	8	3457145	3611865	196	0.07365	NEUTRAL	NA	1	CSMD1
TCGA.DM.A1HB	8	3587621	3643181	67	-0.0703	NEUTRAL	NA	1	CSMD1
TCGA.AA.3850	8	3643642	5884045	2046	-0.16555	NEUTRAL	NA	1	CSMD1
TCGA.DM.A1HB	8	3647581	4518979	904	-0.0614	NEUTRAL	NA	1	CSMD1
TCGA.DM.A1DB	8	3666455	6921967	2855	-0.0794	NEUTRAL	NA	12	"AGPAT5,ANGPT2,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,MCPH1,XKR5"
TCGA.AG.3574	8	3676995	3677986	8	-0.2921	NEUTRAL	NA	1	CSMD1
TCGA.AA.3684	8	3679503	146293413	45801	-0.0086	NEUTRAL	NA	646	Too-Many
TCGA.G4.6304	8	3723183	146293413	45644	0.1081	NEUTRAL	NA	646	Too-Many
TCGA.AG.3612	8	3734897	42599488	16081	-0.0245	NEUTRAL	NA	237	Too-Many
TCGA.AF.2692	8	3789920	69693135	22281	-0.4084	NEUTRAL	NA	319	Too-Many
TCGA.EI.6506	8	3791217	5552850	1616	-0.0281	NEUTRAL	NA	1	CSMD1
TCGA.EI.6512	8	3791217	17754481	7541	-0.0114	NEUTRAL	NA	82	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CNOT7,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,FGL1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,NEIL2,PDGFRL,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SLC7A2,SOX7,SPAG11A,SPAG11B,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,VPS37A,XKR5,XKR6,ZDHHC2,ZNF705B,ZNF705D,ZNF705G"
TCGA.DM.A1D4	8	3791264	15401177	6271	-0.0187	NEUTRAL	NA	71	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3966	8	3836834	47758736	16197	0.0612	NEUTRAL	NA	245	Too-Many
TCGA.AG.3909.01A	8	3889400	6782292	42	-0.5074	NEUTRAL	NA	7	"AGPAT5,ANGPT2,CSMD1,DEFA6,DEFB1,MCPH1,XKR5"
TCGA.D5.6532	8	3910095	98187085	29791	-0.0167	NEUTRAL	NA	423	Too-Many
TCGA.D5.6931	8	3910544	5601351	1505	-0.0038	NEUTRAL	NA	1	CSMD1
TCGA.AA.3968	8	3994099	14910137	5790	-0.0395	NEUTRAL	NA	70	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.D5.5540	8	4143739	6631910	2098	-0.0207	NEUTRAL	NA	4	"AGPAT5,ANGPT2,CSMD1,MCPH1"
TCGA.AA.3858	8	4211746	37610505	14321	-0.17	NEUTRAL	NA	192	Too-Many
TCGA.AA.A00N.01A	8	4277426	8234313	77	0.1572	NEUTRAL	NA	35	"AGPAT5,ANGPT2,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,MCPH1,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF705B,ZNF705G"
TCGA.CK.5914.01A	8	4494885	6874167	48	-0.2925	NEUTRAL	NA	11	"AGPAT5,ANGPT2,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA6,DEFB1,MCPH1,XKR5"
TCGA.AG.A00C.01A	8	4494885	7343784	58	-0.0462	NEUTRAL	NA	23	"AGPAT5,ANGPT2,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB106A,DEFB106B,DEFB4B,MCPH1,SPAG11B,USP17L1,USP17L4,XKR5,ZNF705G"
TCGA.DM.A1HB	8	4529944	4666700	101	-0.0413	NEUTRAL	NA	1	CSMD1
TCGA.DM.A1HB	8	4676660	5525074	680	-0.0628	NEUTRAL	NA	1	CSMD1
TCGA.AZ.4682	8	4676660	11072019	3458	0.3006	NEUTRAL	NA	47	"AGPAT5,ANGPT2,C8orf74,CLDN23,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,ERI1,MCPH1,MFHAS1,MSRA,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF705B,ZNF705G"
TCGA.5M.AAT4	8	4752876	43778913	15239	-0.4885	NEUTRAL	NA	245	Too-Many
TCGA.AY.A8YK	8	4758158	43663674	15226	-0.4352	NEUTRAL	NA	245	Too-Many
TCGA.BM.6198	8	5057817	46924210	15010	-0.43845	NEUTRAL	NA	244	Too-Many
TCGA.EI.7004	8	5077152	32998984	12477	-0.3648	NEUTRAL	NA	182	Too-Many
TCGA.AA.3811	8	5128664	5912099	674	0.0237	NEUTRAL	NA	0	None
TCGA.DM.A1HB	8	5530400	5571691	42	-0.0278	NEUTRAL	NA	0	None
TCGA.EI.6506	8	5555379	40386788	13855	-0.0126	NEUTRAL	NA	219	Too-Many
TCGA.AA.3864	8	5556628	146293413	43921	0	NEUTRAL	NA	645	Too-Many
TCGA.DM.A1HB	8	5601684	14475197	4082	-0.0093	NEUTRAL	NA	69	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.DM.A280	8	5604494	43455242	14488	-0.0059	NEUTRAL	NA	244	Too-Many
TCGA.D5.6931	8	5607155	15784406	4824	-0.0136	NEUTRAL	NA	70	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3850	8	5887259	13349013	3308	0.25815	NEUTRAL	NA	67	"AGPAT5,ANGPT2,BLK,C8orf74,CLDN23,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.3811	8	5913204	13428651	3333	0.3356	NEUTRAL	NA	68	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.NH.A6GC	8	6004204	6249299	199	-0.4735	NEUTRAL	NA	0	None
TCGA.AA.3844	8	6007407	9511708	1540	0.0769	NEUTRAL	NA	39	"AGPAT5,ANGPT2,CLDN23,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,ERI1,MCPH1,MFHAS1,PPP1R3B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF705B,ZNF705G"
TCGA.AA.3967.01A	8	6264120	48734118	2033	-0.2614	NEUTRAL	NA	247	Too-Many
TCGA.CK.4948.01B	8	6266754	9473039	95	-0.3822	NEUTRAL	NA	39	"AGPAT5,ANGPT2,CLDN23,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,ERI1,MCPH1,MFHAS1,PPP1R3B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF705B,ZNF705G"
TCGA.NH.A6GC	8	6289936	7011074	509	-0.5106	NEUTRAL	NA	11	"AGPAT5,ANGPT2,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,MCPH1,XKR5"
TCGA.EI.6883	8	6356238	6473757	138	0.0126	NEUTRAL	NA	2	"ANGPT2,MCPH1"
TCGA.AA.A00Q.01A	8	6360575	6420119	9	-0.0872	NEUTRAL	NA	2	"ANGPT2,MCPH1"
TCGA.A6.6780	8	6438314	146293413	43175	-0.0031	NEUTRAL	NA	644	Too-Many
TCGA.AA.3862.01A	8	6590030	7308205	25	0.1295	NEUTRAL	NA	16	"AGPAT5,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB4B,SPAG11B,USP17L1,USP17L4,XKR5,ZNF705G"
TCGA.AA.A010.01A	8	6599140	7752172	42	0.2563	NEUTRAL	NA	28	"AGPAT5,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,PRR23D1,PRR23D2,SPAG11A,SPAG11B,USP17L1,USP17L4,XKR5,ZNF705G"
TCGA.D5.6531	8	6665741	100252753	27934	-0.2108	NEUTRAL	NA	432	Too-Many
TCGA.AA.A00Q.01A	8	6782292	6794202	4	-0.1243	NEUTRAL	NA	2	"DEFA4,DEFA6"
TCGA.AA.3930.01A	8	6782292	8234313	23	-0.0739	NEUTRAL	NA	29	"DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,USP17L1,USP17L3,USP17L4,USP17L8,ZNF705B,ZNF705G"
TCGA.AG.3909.01A	8	6783337	8196943	38	0.1103	NEUTRAL	NA	29	"DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,USP17L1,USP17L3,USP17L4,USP17L8,ZNF705B,ZNF705G"
TCGA.AG.4009.01A	8	6793491	7706164	29	-0.012	NEUTRAL	NA	23	"DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4B,PRR23D1,PRR23D2,SPAG11A,SPAG11B,USP17L1,USP17L4,ZNF705G"
TCGA.AA.A00F.01A	8	7305456	9538176	41	-0.265	NEUTRAL	NA	24	"CLDN23,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,ERI1,MFHAS1,PPP1R3B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,TNKS,USP17L3,USP17L8,ZNF705B"
TCGA.AG.3611.01A	8	7318892	8559862	17	-0.4326	NEUTRAL	NA	20	"CLDN23,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,USP17L3,USP17L8,ZNF705B"
TCGA.AG.A00C.01A	8	7686275	8175629	8	-0.1947	NEUTRAL	NA	13	"DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB106A,DEFB106B,DEFB4A,SGK223,SPAG11A,SPAG11B,USP17L3,USP17L8,ZNF705B"
TCGA.AG.A008.01A	8	7698579	37822772	1407	0.0971	NEUTRAL	NA	174	Too-Many
TCGA.AA.A02F.01A	8	7706164	42162660	1636	0.0889	NEUTRAL	NA	205	Too-Many
TCGA.A6.3808.01A	8	7718107	21848313	479	0.3534	NEUTRAL	NA	70	"ASAH1,ATP6V1B2,BLK,C8orf48,C8orf74,CLDN23,CNOT7,CSGALNACT1,CTSB,DEFB103A,DEFB103B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DLC1,DOK2,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,FGL1,GATA4,GFRA2,INTS10,KIAA1456,LOC100133267,LONRF1,LPL,LZTS1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRSS55,PSD3,RP1L1,SGCZ,SGK223,SH2D4A,SLC18A1,SLC35G5,SLC7A2,SOX7,SPAG11A,TNKS,TUSC3,USP17L2,USP17L3,USP17L7,USP17L8,VPS37A,XKR6,XPO7,ZDHHC2,ZNF705B,ZNF705D"
TCGA.DM.A28M.01A	8	7718107	30945240	1335	-0.1028	NEUTRAL	NA	155	Too-Many
TCGA.AA.3861.01A	8	7718107	142490403	5217	-0.158	NEUTRAL	NA	533	Too-Many
TCGA.CK.5914.01A	8	7753959	13425734	193	-0.1523	NEUTRAL	NA	39	"BLK,C8orf48,C8orf74,CLDN23,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,TNKS,USP17L2,USP17L3,USP17L7,USP17L8,XKR6,ZNF705B,ZNF705D"
TCGA.AA.A00A.01A	8	7753959	146279416	4240	0.046	NEUTRAL	NA	616	Too-Many
TCGA.F4.6809	8	8087143	11167699	1678	-0.4454	NEUTRAL	NA	14	"C8orf74,CLDN23,ERI1,MFHAS1,MSRA,MTMR9,PINX1,PPP1R3B,PRSS55,RP1L1,SGK223,SOX7,TNKS,XKR6"
TCGA.G4.6626	8	8087143	14822103	3245	-0.4181	NEUTRAL	NA	36	"BLK,C8orf48,C8orf74,CLDN23,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,TNKS,USP17L2,USP17L7,XKR6,ZNF705D"
TCGA.D5.5539	8	8087143	15335342	3488	-0.0069	NEUTRAL	NA	36	"BLK,C8orf48,C8orf74,CLDN23,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,TNKS,USP17L2,USP17L7,XKR6,ZNF705D"
TCGA.NH.A6GC	8	8087143	146293413	42893	0	NEUTRAL	NA	612	Too-Many
TCGA.AD.6888	8	8121171	8615873	283	-0.012	NEUTRAL	NA	2	"CLDN23,SGK223"
TCGA.AG.A00C.01A	8	8185199	8998334	18	0.2337	NEUTRAL	NA	5	"CLDN23,ERI1,MFHAS1,PPP1R3B,SGK223"
TCGA.AG.3605.01A	8	8234313	145065401	103	0.0506	NEUTRAL	NA	570	Too-Many
TCGA.AA.3930.01A	8	8238896	22428431	643	-0.4144	NEUTRAL	NA	79	"ASAH1,ATP6V1B2,BLK,BMP1,C8orf48,C8orf74,CLDN23,CNOT7,CSGALNACT1,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,DMTN,DOK2,ERI1,FAM160B2,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF17,FGF20,FGL1,GATA4,GFRA2,HR,INTS10,KIAA1456,LGI3,LOC100133267,LONRF1,LPL,LZTS1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,NAT1,NAT2,NEIL2,NPM2,NUDT18,PCM1,PDGFRL,PHYHIP,PINX1,PIWIL2,POLR3D,PPP1R3B,PPP3CC,PRSS55,PSD3,REEP4,RP1L1,SFTPC,SGCZ,SGK223,SH2D4A,SLC18A1,SLC35G5,SLC39A14,SLC7A2,SORBS3,SOX7,TNKS,TUSC3,USP17L2,USP17L7,VPS37A,XKR6,XPO7,ZDHHC2,ZNF705D"
TCGA.AZ.5403	8	8396885	8810601	224	0.1791	NEUTRAL	NA	2	"CLDN23,MFHAS1"
TCGA.AA.3941	8	8476040	8497136	20	0.1236	NEUTRAL	NA	0	None
TCGA.AA.A00Q.01A	8	8643451	26484672	745	0.1353	NEUTRAL	NA	110	Too-Many
TCGA.AA.A010.01A	8	8865468	10782097	70	0.3498	NEUTRAL	NA	10	"C8orf74,ERI1,MSRA,PINX1,PPP1R3B,PRSS55,RP1L1,SOX7,TNKS,XKR6"
TCGA.AG.3906.01A	8	8865468	21882747	457	-0.0373	NEUTRAL	NA	61	"ASAH1,ATP6V1B2,BLK,C8orf48,C8orf74,CNOT7,CSGALNACT1,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,DOK2,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,FGL1,GATA4,GFRA2,INTS10,KIAA1456,LOC100133267,LONRF1,LPL,LZTS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,NAT1,NAT2,NEIL2,NPM2,PCM1,PDGFRL,PINX1,PPP1R3B,PRSS55,PSD3,RP1L1,SGCZ,SH2D4A,SLC18A1,SLC35G5,SLC7A2,SOX7,TNKS,TUSC3,USP17L2,USP17L7,VPS37A,XKR6,XPO7,ZDHHC2,ZNF705D"
TCGA.A6.6653	8	9063026	9127515	47	-0.0211	NEUTRAL	NA	0	None
TCGA.A6.6653	8	9132209	9165653	29	-0.4924	NEUTRAL	NA	0	None
TCGA.A6.6653	8	9166146	19039641	4896	-0.0125	NEUTRAL	NA	48	"ASAH1,BLK,C8orf48,C8orf74,CNOT7,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,FGL1,GATA4,KIAA1456,LOC100133267,LONRF1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PINX1,PRSS55,PSD3,RP1L1,SGCZ,SLC35G5,SLC7A2,SOX7,TNKS,TUSC3,USP17L2,USP17L7,VPS37A,XKR6,ZDHHC2,ZNF705D"
TCGA.AY.6196	8	9389928	9680632	77	-0.136	NEUTRAL	NA	1	TNKS
TCGA.AG.A00C.01A	8	9413413	10395944	39	-0.2522	NEUTRAL	NA	3	"MSRA,PRSS55,TNKS"
TCGA.AA.3941	8	9521120	9571620	13	-0.1372	NEUTRAL	NA	1	TNKS
TCGA.CK.4948.01B	8	9537391	10782097	60	0.3088	NEUTRAL	NA	8	"C8orf74,MSRA,PINX1,PRSS55,RP1L1,SOX7,TNKS,XKR6"
TCGA.AA.3844	8	9571620	11840430	1170	0.0634	NEUTRAL	NA	18	"BLK,C8orf74,CTSB,DEFB135,DEFB136,FAM167A,FDFT1,GATA4,MSRA,MTMR9,NEIL2,PINX1,PRSS55,RP1L1,SLC35G5,SOX7,TNKS,XKR6"
TCGA.AG.4009.01A	8	9610019	11058108	44	-0.4035	NEUTRAL	NA	8	"C8orf74,MSRA,PINX1,PRSS55,RP1L1,SOX7,TNKS,XKR6"
TCGA.AA.A00N.01A	8	9634114	10177376	8	-0.2069	NEUTRAL	NA	2	"MSRA,TNKS"
TCGA.AY.6196	8	9681439	12559834	1147	-0.4821	NEUTRAL	NA	25	"BLK,C8orf74,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,LOC100133267,MSRA,MTMR9,NEIL2,PINX1,PRSS55,RP1L1,SLC35G5,SOX7,USP17L2,USP17L7,XKR6,ZNF705D"
TCGA.D5.5540	8	9847564	11755871	1025	-0.0298	NEUTRAL	NA	15	"BLK,C8orf74,CTSB,FAM167A,FDFT1,GATA4,MSRA,MTMR9,NEIL2,PINX1,PRSS55,RP1L1,SLC35G5,SOX7,XKR6"
TCGA.AD.6888	8	9884998	9938386	29	-0.0536	NEUTRAL	NA	1	MSRA
TCGA.AA.3518	8	10164983	144728017	41559	0.0017	NEUTRAL	NA	553	Too-Many
TCGA.AM.5820	8	10201531	10775453	344	-0.4654	NEUTRAL	NA	7	"C8orf74,MSRA,PINX1,PRSS55,RP1L1,SOX7,XKR6"
TCGA.AG.3885	8	10375943	11934659	742	-0.045	NEUTRAL	NA	19	"BLK,C8orf74,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,FAM167A,FDFT1,GATA4,LOC100133267,MTMR9,NEIL2,PINX1,PRSS55,RP1L1,SLC35G5,SOX7,XKR6"
TCGA.AA.A00N.01A	8	10464358	12586388	97	-0.3021	NEUTRAL	NA	24	"BLK,C8orf74,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,LOC100133267,LONRF1,MTMR9,NEIL2,PINX1,RP1L1,SLC35G5,SOX7,USP17L2,USP17L7,XKR6,ZNF705D"
TCGA.AG.A00C.01A	8	10464358	12600635	95	0.0773	NEUTRAL	NA	24	"BLK,C8orf74,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,LOC100133267,LONRF1,MTMR9,NEIL2,PINX1,RP1L1,SLC35G5,SOX7,USP17L2,USP17L7,XKR6,ZNF705D"
TCGA.CM.6679	8	10582040	11859739	635	-0.05675	NEUTRAL	NA	14	"BLK,CTSB,DEFB134,DEFB135,DEFB136,FAM167A,FDFT1,GATA4,MTMR9,NEIL2,PINX1,SLC35G5,SOX7,XKR6"
TCGA.AD.6888	8	10602108	11215616	319	-0.0772	NEUTRAL	NA	4	"MTMR9,PINX1,SLC35G5,XKR6"
TCGA.AM.5820	8	10778852	10825367	20	-0.0443	NEUTRAL	NA	1	XKR6
TCGA.CK.4948.01B	8	10859858	33451002	1318	-0.345	NEUTRAL	NA	142	Too-Many
TCGA.AM.5820	8	10876602	11281272	185	0.0911	NEUTRAL	NA	4	"FAM167A,MTMR9,SLC35G5,XKR6"
TCGA.5M.AAT6	8	10915559	42654229	11814	-0.2265	NEUTRAL	NA	192	Too-Many
TCGA.AA.3522	8	11044926	146293413	41301	0.0357	NEUTRAL	NA	600	Too-Many
TCGA.F4.6809	8	11172395	29491965	8052	-0.4344	NEUTRAL	NA	122	Too-Many
TCGA.AA.3848	8	11323024	11859739	247	0.0107	NEUTRAL	NA	9	"BLK,CTSB,DEFB134,DEFB135,DEFB136,FAM167A,FDFT1,GATA4,NEIL2"
TCGA.AM.5820	8	11337119	11934659	241	0.1208	NEUTRAL	NA	10	"BLK,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,FDFT1,GATA4,LOC100133267,NEIL2"
TCGA.AA.A010.01A	8	11702617	12583188	25	0.0591	NEUTRAL	NA	12	"CTSB,DEFB130,DEFB134,DEFB135,DEFB136,FAM86B1,FAM86B2,LOC100133267,LONRF1,USP17L2,USP17L7,ZNF705D"
TCGA.AG.3909.01A	8	11703129	12883045	35	-0.1683	NEUTRAL	NA	13	"CTSB,DEFB130,DEFB134,DEFB135,DEFB136,FAM86B1,FAM86B2,KIAA1456,LOC100133267,LONRF1,USP17L2,USP17L7,ZNF705D"
TCGA.AD.6888	8	11734617	14453096	1125	-0.3294	NEUTRAL	NA	15	"C8orf48,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,FAM86B1,FAM86B2,KIAA1456,LOC100133267,LONRF1,SGCZ,USP17L2,USP17L7,ZNF705D"
TCGA.AA.3844	8	11840574	12715796	108	-0.177	NEUTRAL	NA	10	"DEFB130,DEFB134,DEFB135,FAM86B1,FAM86B2,LOC100133267,LONRF1,USP17L2,USP17L7,ZNF705D"
TCGA.AA.3941	8	11840574	12807735	158	0.3594	NEUTRAL	NA	11	"DEFB130,DEFB134,DEFB135,FAM86B1,FAM86B2,KIAA1456,LOC100133267,LONRF1,USP17L2,USP17L7,ZNF705D"
TCGA.AD.A5EK	8	11859739	12554742	13	-0.0659	NEUTRAL	NA	7	"DEFB130,FAM86B1,FAM86B2,LOC100133267,USP17L2,USP17L7,ZNF705D"
TCGA.D5.6930	8	11877194	12554742	12	-0.5019	NEUTRAL	NA	7	"DEFB130,FAM86B1,FAM86B2,LOC100133267,USP17L2,USP17L7,ZNF705D"
TCGA.CM.6679	8	11877194	15246969	1447	-0.39595	NEUTRAL	NA	12	"C8orf48,DEFB130,DLC1,FAM86B1,FAM86B2,KIAA1456,LOC100133267,LONRF1,SGCZ,USP17L2,USP17L7,ZNF705D"
TCGA.CM.4747	8	11877194	27530474	7035	-0.071	NEUTRAL	NA	96	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,ASAH1,ATP6V1B2,BIN3,BMP1,BNIP3L,C8orf48,C8orf58,CCAR2,CDCA2,CHMP7,CHRNA2,CLU,CNOT7,CSGALNACT1,DEFB130,DLC1,DMTN,DOCK5,DOK2,DPYSL2,EBF2,EGR3,ENTPD4,EPHX2,FAM160B2,FAM86B1,FAM86B2,FGF17,FGF20,FGL1,GFRA2,GNRH1,HR,INTS10,KCTD9,KIAA1456,LGI3,LOC100133267,LONRF1,LOXL2,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,PNMA2,POLR3D,PPP2R2A,PPP3CC,PSD3,PTK2B,R3HCC1,REEP4,RHOBTB2,SCARA3,SFTPC,SGCZ,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,STC1,STMN4,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,TUSC3,USP17L2,USP17L7,VPS37A,XPO7,ZDHHC2,ZNF705D"
TCGA.D5.6538	8	11893227	12554742	11	0.002	NEUTRAL	NA	7	"DEFB130,FAM86B1,FAM86B2,LOC100133267,USP17L2,USP17L7,ZNF705D"
TCGA.AA.3972	8	11893227	23469197	5395	0.0726	NEUTRAL	NA	71	"ASAH1,ATP6V1B2,BIN3,BMP1,C8orf48,C8orf58,CCAR2,CHMP7,CNOT7,CSGALNACT1,DEFB130,DLC1,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FAM86B1,FAM86B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,KIAA1456,LGI3,LOC100133267,LONRF1,LOXL2,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SGCZ,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TUSC3,USP17L2,USP17L7,VPS37A,XPO7,ZDHHC2,ZNF705D"
TCGA.F4.6461	8	12473557	32540035	8799	-0.3318	NEUTRAL	NA	118	Too-Many
TCGA.AA.3543	8	12473557	118340819	30649	0.0112	NEUTRAL	NA	421	Too-Many
TCGA.CI.6621	8	12530281	42951983	11355	-0.354	NEUTRAL	NA	178	Too-Many
TCGA.D5.6930	8	12556041	29305307	7627	-5.00E-04	NEUTRAL	NA	104	Too-Many
TCGA.AY.6196	8	12562991	56719457	13739	-0.1664	NEUTRAL	NA	206	Too-Many
TCGA.AA.3844	8	12734364	13229194	284	-0.034	NEUTRAL	NA	2	"DLC1,KIAA1456"
TCGA.AG.A00C.01A	8	12863745	16032654	52	-0.2597	NEUTRAL	NA	6	"C8orf48,DLC1,KIAA1456,MSR1,SGCZ,TUSC3"
TCGA.AA.A00N.01A	8	12863745	19675001	242	0.3285	NEUTRAL	NA	24	"ASAH1,C8orf48,CNOT7,CSGALNACT1,DLC1,FGF20,FGL1,INTS10,KIAA1456,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,PSD3,SGCZ,SH2D4A,SLC7A2,TUSC3,VPS37A,ZDHHC2"
TCGA.A6.2672	8	12874914	17377791	2315	0.0552	NEUTRAL	NA	13	"C8orf48,CNOT7,DLC1,FGF20,KIAA1456,MICU3,MSR1,MTMR7,SGCZ,SLC7A2,TUSC3,VPS37A,ZDHHC2"
TCGA.AA.3872	8	12908073	37470128	9850	-0.2494	NEUTRAL	NA	123	Too-Many
TCGA.AG.3909.01A	8	13072088	17088202	64	-0.3311	NEUTRAL	NA	9	"C8orf48,CNOT7,DLC1,FGF20,MICU3,MSR1,SGCZ,TUSC3,ZDHHC2"
TCGA.AA.3844	8	13235840	16482908	1668	-0.4658	NEUTRAL	NA	5	"C8orf48,DLC1,MSR1,SGCZ,TUSC3"
TCGA.AA.3941	8	13236097	16537483	1699	-0.0359	NEUTRAL	NA	5	"C8orf48,DLC1,MSR1,SGCZ,TUSC3"
TCGA.AA.3509.01A	8	13258937	17141930	73	-0.1925	NEUTRAL	NA	10	"C8orf48,CNOT7,DLC1,FGF20,MICU3,MSR1,SGCZ,TUSC3,VPS37A,ZDHHC2"
TCGA.AZ.4684.01A	8	13258937	17198835	83	0.3318	NEUTRAL	NA	11	"C8orf48,CNOT7,DLC1,FGF20,MICU3,MSR1,MTMR7,SGCZ,TUSC3,VPS37A,ZDHHC2"
TCGA.AA.3952	8	13282820	15565256	1147	-0.0024	NEUTRAL	NA	4	"C8orf48,DLC1,SGCZ,TUSC3"
TCGA.AA.3850	8	13349070	16536612	1635	-0.49865	NEUTRAL	NA	5	"C8orf48,DLC1,MSR1,SGCZ,TUSC3"
TCGA.AA.3811	8	13430577	16828256	1720	-0.0681	NEUTRAL	NA	3	"MSR1,SGCZ,TUSC3"
TCGA.CK.5914.01A	8	13947940	19675001	214	0.2044	NEUTRAL	NA	21	"ASAH1,CNOT7,CSGALNACT1,FGF20,FGL1,INTS10,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,PSD3,SGCZ,SH2D4A,SLC7A2,TUSC3,VPS37A,ZDHHC2"
TCGA.AG.A011.01A	8	14095068	48196564	1685	-0.2951	NEUTRAL	NA	177	Too-Many
TCGA.EI.6885	8	14307252	16259611	985	-0.3179	NEUTRAL	NA	3	"MSR1,SGCZ,TUSC3"
TCGA.AD.6888	8	14453287	15401177	450	0.2859	NEUTRAL	NA	2	"SGCZ,TUSC3"
TCGA.DM.A1HB	8	14481801	19324082	2527	-0.0272	NEUTRAL	NA	20	"ASAH1,CNOT7,CSGALNACT1,FGF20,FGL1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,PSD3,SGCZ,SH2D4A,SLC7A2,TUSC3,VPS37A,ZDHHC2"
TCGA.AA.3517	8	14851767	146293413	39652	-0.3113	NEUTRAL	NA	577	Too-Many
TCGA.AA.3968	8	14912089	15406305	231	0.2363	NEUTRAL	NA	2	"SGCZ,TUSC3"
TCGA.G4.6322	8	14975596	26025659	5060	-0.156	NEUTRAL	NA	73	"ADAM28,ADAM7,ADAMDEC1,ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CDCA2,CHMP7,CNOT7,CSGALNACT1,DMTN,DOCK5,DOK2,EBF2,EGR3,ENTPD4,FAM160B2,FGF17,FGF20,FGL1,GFRA2,GNRH1,HR,INTS10,KCTD9,LGI3,LOXL2,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SGCZ,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TUSC3,VPS37A,XPO7,ZDHHC2"
TCGA.CM.6679	8	15247489	15830135	332	0.02075	NEUTRAL	NA	1	TUSC3
TCGA.DM.A1DA	8	15406305	15411607	4	-0.4925	NEUTRAL	NA	1	TUSC3
TCGA.AD.6888	8	15406305	18604753	1736	-0.309	NEUTRAL	NA	17	"ASAH1,CNOT7,FGF20,FGL1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,PSD3,SLC7A2,TUSC3,VPS37A,ZDHHC2"
TCGA.DY.A1DF	8	15423269	108080618	26519	0.3591	NEUTRAL	NA	397	Too-Many
TCGA.AA.3968	8	15423269	146293413	39357	-0.0009	NEUTRAL	NA	576	Too-Many
TCGA.DC.5337	8	15423269	146293413	39248	-0.0015	NEUTRAL	NA	576	Too-Many
TCGA.DM.A1D4	8	15423269	146293413	39404	-0.0007	NEUTRAL	NA	576	Too-Many
TCGA.AA.A010.01A	8	15531213	17074615	45	-0.3433	NEUTRAL	NA	5	"FGF20,MICU3,MSR1,TUSC3,ZDHHC2"
TCGA.CA.6715	8	15755267	17912495	1149	0.0453	NEUTRAL	NA	12	"CNOT7,FGF20,FGL1,MICU3,MSR1,MTMR7,MTUS1,PCM1,PDGFRL,SLC7A2,VPS37A,ZDHHC2"
TCGA.D5.6931	8	15788268	146293413	39085	0	NEUTRAL	NA	575	Too-Many
TCGA.CM.6679	8	15830334	16523685	308	-0.42405	NEUTRAL	NA	1	MSR1
TCGA.AA.3856	8	15968193	43778913	9592	-0.0231	NEUTRAL	NA	174	Too-Many
TCGA.AG.A00C.01A	8	16035357	23104161	480	0.0183	NEUTRAL	NA	54	"ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CHMP7,CNOT7,CSGALNACT1,DMTN,DOK2,EGR3,FAM160B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,LGI3,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC39A14,SLC7A2,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,VPS37A,XPO7,ZDHHC2"
TCGA.AA.3875	8	16367434	128424791	32363	0.1617	NEUTRAL	NA	456	Too-Many
TCGA.AA.3844	8	16486530	23468375	3319	-0.0031	NEUTRAL	NA	57	"ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CHMP7,CNOT7,CSGALNACT1,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,MICU3,MTMR7,MTUS1,NAT1,NAT2,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,VPS37A,XPO7,ZDHHC2"
TCGA.CM.6679	8	16524343	16907316	178	-0.01145	NEUTRAL	NA	2	"FGF20,MICU3"
TCGA.AA.3850	8	16537483	21548696	2729	0.10445	NEUTRAL	NA	22	"ASAH1,ATP6V1B2,CNOT7,CSGALNACT1,FGF20,FGL1,INTS10,LPL,LZTS1,MICU3,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,PSD3,SH2D4A,SLC18A1,SLC7A2,VPS37A,ZDHHC2"
TCGA.AA.3982	8	16543001	23694486	3392	-0.4388	NEUTRAL	NA	59	"ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CHMP7,CNOT7,CSGALNACT1,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,MICU3,MTMR7,MTUS1,NAT1,NAT2,NKX2-6,NKX3-1,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,VPS37A,XPO7,ZDHHC2"
TCGA.AA.3811	8	16829795	18257279	821	0.2639	NEUTRAL	NA	14	"ASAH1,CNOT7,FGF20,FGL1,MICU3,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,SLC7A2,VPS37A,ZDHHC2"
TCGA.CM.6679	8	16914410	37112013	7650	-0.46995	NEUTRAL	NA	117	Too-Many
TCGA.DM.A288	8	17041427	146293413	38500	-0.0281	NEUTRAL	NA	572	Too-Many
TCGA.EI.6885	8	17049246	24378035	3373	-0.1288	NEUTRAL	NA	61	"ADAM28,ADAM7,ADAMDEC1,ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CHMP7,CNOT7,CSGALNACT1,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,FGL1,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,MTMR7,MTUS1,NAT1,NAT2,NKX2-6,NKX3-1,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,VPS37A,XPO7,ZDHHC2"
TCGA.AA.A010.01A	8	17088202	20054876	195	0.3036	NEUTRAL	NA	18	"ASAH1,ATP6V1B2,CNOT7,CSGALNACT1,FGL1,INTS10,LPL,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,PSD3,SH2D4A,SLC18A1,SLC7A2,VPS37A"
TCGA.AA.A00F.01A	8	17094694	17102503	3	0.1297	NEUTRAL	NA	1	CNOT7
TCGA.AA.A00F.01A	8	17104703	23711882	381	-0.4452	NEUTRAL	NA	56	"ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CHMP7,CSGALNACT1,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,FGL1,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,MTMR7,MTUS1,NAT1,NAT2,NKX2-6,NKX3-1,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,VPS37A,XPO7"
TCGA.AG.3909.01A	8	17123402	19675001	146	-0.3645	NEUTRAL	NA	14	"ASAH1,CSGALNACT1,FGL1,INTS10,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,PSD3,SH2D4A,SLC7A2,VPS37A"
TCGA.AZ.4684.01A	8	17206415	17742936	47	-0.269	NEUTRAL	NA	5	"FGL1,MTMR7,MTUS1,PDGFRL,SLC7A2"
TCGA.A6.2672	8	17395671	139654844	36493	0.0259	NEUTRAL	NA	472	Too-Many
TCGA.EI.6512	8	17764357	146293413	38111	-0.006	NEUTRAL	NA	564	Too-Many
TCGA.AZ.4684.01A	8	17868046	24170860	459	-0.1935	NEUTRAL	NA	51	"ADAM28,ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CHMP7,CSGALNACT1,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,NAT1,NAT2,NKX2-6,NKX3-1,NPM2,NUDT18,PCM1,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,XPO7"
TCGA.CK.4952.01A	8	17960566	17977257	12	0.2685	NEUTRAL	NA	0	None
TCGA.A6.A566	8	18072845	21737729	1904	-0.3639	NEUTRAL	NA	11	"ATP6V1B2,CSGALNACT1,GFRA2,INTS10,LPL,LZTS1,NAT1,NAT2,PSD3,SH2D4A,SLC18A1"
TCGA.AA.3941	8	18100754	18208140	42	0.0982	NEUTRAL	NA	0	None
TCGA.AA.3811	8	18261678	21376432	1698	0.248	NEUTRAL	NA	8	"ATP6V1B2,CSGALNACT1,INTS10,LPL,LZTS1,PSD3,SH2D4A,SLC18A1"
TCGA.CA.6715	8	18338323	18437728	72	0.028	NEUTRAL	NA	1	PSD3
TCGA.AD.6888	8	18612611	19079893	274	0.304	NEUTRAL	NA	1	PSD3
TCGA.AG.A032.01A	8	18622902	132971795	4215	0.1982	NEUTRAL	NA	449	Too-Many
TCGA.AA.3941	8	18651427	18656089	10	-0.3749	NEUTRAL	NA	1	PSD3
TCGA.CM.6678	8	18866226	146293413	37438	0.0212	NEUTRAL	NA	560	Too-Many
TCGA.A6.6653	8	19039765	19090102	41	-0.4153	NEUTRAL	NA	0	None
TCGA.AA.3941	8	19076742	19084783	8	-0.3611	NEUTRAL	NA	0	None
TCGA.AD.6888	8	19080150	19261729	95	-0.376	NEUTRAL	NA	2	"CSGALNACT1,SH2D4A"
TCGA.A6.6653	8	19108471	38379249	6628	-0.0066	NEUTRAL	NA	122	Too-Many
TCGA.AD.6888	8	19263002	38379249	6528	-0.0043	NEUTRAL	NA	121	Too-Many
TCGA.DM.A1HB	8	19389739	62381603	11784	-0.0029	NEUTRAL	NA	201	Too-Many
TCGA.A6.5666	8	19628528	21678102	1019	-0.3263	NEUTRAL	NA	6	"ATP6V1B2,GFRA2,INTS10,LPL,LZTS1,SLC18A1"
TCGA.CK.5914.01A	8	19689494	19822731	17	-0.1174	NEUTRAL	NA	2	"INTS10,LPL"
TCGA.AA.A00N.01A	8	19690633	19796899	7	0.0087	NEUTRAL	NA	2	"INTS10,LPL"
TCGA.AA.3941	8	19855271	19915392	23	0.1209	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	8	20003224	20030517	10	0.2918	NEUTRAL	NA	1	SLC18A1
TCGA.AG.3909.01A	8	20031830	21982786	97	-0.4598	NEUTRAL	NA	12	"ATP6V1B2,DMTN,DOK2,FAM160B2,FGF17,GFRA2,HR,LZTS1,NPM2,NUDT18,SLC18A1,XPO7"
TCGA.AA.A01Q.01A	8	20061922	20112359	15	-0.21	NEUTRAL	NA	2	"ATP6V1B2,LZTS1"
TCGA.CK.5914.01A	8	20061922	21852956	48	0.1009	NEUTRAL	NA	5	"ATP6V1B2,DOK2,GFRA2,LZTS1,XPO7"
TCGA.AA.A00N.01A	8	20107266	21829357	20	0.161	NEUTRAL	NA	4	"DOK2,GFRA2,LZTS1,XPO7"
TCGA.AG.4009.01A	8	20107266	21859574	36	-0.4699	NEUTRAL	NA	4	"DOK2,GFRA2,LZTS1,XPO7"
TCGA.G4.6586	8	20109491	146293413	36885	-0.0031	NEUTRAL	NA	553	Too-Many
TCGA.EI.6511	8	20544383	23900893	1276	0.3544	NEUTRAL	NA	38	"BIN3,BMP1,C8orf58,CCAR2,CHMP7,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,GFRA2,HR,LGI3,LOXL2,NKX2-6,NKX3-1,NPM2,NUDT18,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,R3HCC1,REEP4,RHOBTB2,SFTPC,SLC25A37,SLC39A14,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,XPO7"
TCGA.A6.5666	8	21682043	27898693	2370	0.3032	NEUTRAL	NA	64	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BIN3,BMP1,BNIP3L,C8orf58,CCAR2,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DMTN,DOCK5,DOK2,DPYSL2,EBF2,EGR3,ENTPD4,EPHX2,ESCO2,FAM160B2,FGF17,GNRH1,HR,KCTD9,LGI3,LOXL2,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NUDT18,NUGGC,PBK,PDLIM2,PEBP4,PHYHIP,PIWIL2,PNMA2,POLR3D,PPP2R2A,PPP3CC,PTK2B,R3HCC1,REEP4,RHOBTB2,SCARA3,SCARA5,SFTPC,SLC25A37,SLC39A14,SORBS3,STC1,STMN4,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,XPO7"
TCGA.AZ.6601	8	21709511	129745067	30113	0.001	NEUTRAL	NA	435	Too-Many
TCGA.A6.A566	8	21746705	146293413	35707	0.0059	NEUTRAL	NA	551	Too-Many
TCGA.AA.A010.01A	8	21824317	21882747	28	0.3603	NEUTRAL	NA	2	"NPM2,XPO7"
TCGA.AA.A00N.01A	8	21848313	21882747	12	0.2293	NEUTRAL	NA	2	"NPM2,XPO7"
TCGA.AA.A01Q.01A	8	21938330	21958920	7	0.2167	NEUTRAL	NA	2	"DMTN,FAM160B2"
TCGA.A6.3808.01A	8	22031063	22446778	96	0.1606	NEUTRAL	NA	8	"BMP1,PDLIM2,PHYHIP,PIWIL2,POLR3D,PPP3CC,SLC39A14,SORBS3"
TCGA.AG.3891.01A	8	22033624	22432123	86	0.3696	NEUTRAL	NA	7	"BMP1,PHYHIP,PIWIL2,POLR3D,PPP3CC,SLC39A14,SORBS3"
TCGA.AA.A010.01A	8	22049532	22069060	13	-0.2365	NEUTRAL	NA	1	BMP1
TCGA.AG.4009.01A	8	22049532	22102416	18	-0.1142	NEUTRAL	NA	2	"BMP1,PHYHIP"
TCGA.AA.A00N.01A	8	22049532	22102931	19	0.0047	NEUTRAL	NA	3	"BMP1,PHYHIP,POLR3D"
TCGA.AA.A01Q.01A	8	22049532	22107887	24	-0.3315	NEUTRAL	NA	3	"BMP1,PHYHIP,POLR3D"
TCGA.AF.3914.01A	8	22049532	22421449	72	-0.3828	NEUTRAL	NA	7	"BMP1,PHYHIP,PIWIL2,POLR3D,PPP3CC,SLC39A14,SORBS3"
TCGA.AG.3906.01A	8	22051907	22502196	104	0.0382	NEUTRAL	NA	11	"BIN3,BMP1,C8orf58,CCAR2,PDLIM2,PHYHIP,PIWIL2,POLR3D,PPP3CC,SLC39A14,SORBS3"
TCGA.DY.A1DD	8	22055347	27171485	1923	0.0075	NEUTRAL	NA	44	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BIN3,BMP1,BNIP3L,C8orf58,CCAR2,CDCA2,CHMP7,DOCK5,DPYSL2,EBF2,EGR3,ENTPD4,GNRH1,KCTD9,LOXL2,NEFL,NEFM,NKX2-6,NKX3-1,PDLIM2,PEBP4,PHYHIP,PIWIL2,PNMA2,POLR3D,PPP2R2A,PPP3CC,PTK2B,R3HCC1,RHOBTB2,SLC25A37,SLC39A14,SORBS3,STC1,STMN4,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35"
TCGA.AG.4009.01A	8	22104654	22390385	45	-0.5004	NEUTRAL	NA	4	"PIWIL2,POLR3D,PPP3CC,SLC39A14"
TCGA.AA.A01Q.01A	8	22136851	22414218	45	0.16	NEUTRAL	NA	4	"PIWIL2,PPP3CC,SLC39A14,SORBS3"
TCGA.AG.A01J.01A	8	22136851	27291542	373	-0.3893	NEUTRAL	NA	41	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BIN3,BNIP3L,C8orf58,CCAR2,CDCA2,CHMP7,DOCK5,DPYSL2,EBF2,EGR3,ENTPD4,GNRH1,KCTD9,LOXL2,NEFL,NEFM,NKX2-6,NKX3-1,PDLIM2,PEBP4,PIWIL2,PNMA2,PPP2R2A,PPP3CC,PTK2B,R3HCC1,RHOBTB2,SLC25A37,SLC39A14,SORBS3,STC1,STMN4,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35"
TCGA.AG.A01L.01A	8	22144994	22173741	13	0.2691	NEUTRAL	NA	1	PIWIL2
TCGA.CK.5914.01A	8	22147694	22390385	34	0.2249	NEUTRAL	NA	3	"PIWIL2,PPP3CC,SLC39A14"
TCGA.AA.A010.01A	8	22175635	22370814	19	0.0288	NEUTRAL	NA	3	"PIWIL2,PPP3CC,SLC39A14"
TCGA.AG.A01L.01A	8	22175635	22419321	28	-0.0384	NEUTRAL	NA	4	"PIWIL2,PPP3CC,SLC39A14,SORBS3"
TCGA.AM.5820	8	22418672	22643542	69	-0.1323	NEUTRAL	NA	7	"BIN3,C8orf58,CCAR2,EGR3,PDLIM2,PEBP4,SORBS3"
TCGA.AA.3939.01A	8	22419321	22494367	43	-0.0819	NEUTRAL	NA	5	"BIN3,C8orf58,CCAR2,PDLIM2,SORBS3"
TCGA.AG.A01L.01A	8	22421449	22451995	10	0.3633	NEUTRAL	NA	2	"PDLIM2,SORBS3"
TCGA.AG.3891.01A	8	22438063	22460013	8	-0.2244	NEUTRAL	NA	2	"C8orf58,PDLIM2"
TCGA.AA.A01Q.01A	8	22447059	22477076	22	-0.2203	NEUTRAL	NA	3	"C8orf58,CCAR2,PDLIM2"
TCGA.AG.3891.01A	8	22460659	22487905	18	0.1577	NEUTRAL	NA	3	"BIN3,C8orf58,CCAR2"
TCGA.AA.3930.01A	8	22460659	40532171	1082	-0.3517	NEUTRAL	NA	107	Too-Many
TCGA.AG.A01L.01A	8	22460659	95565558	2662	-0.089	NEUTRAL	NA	295	Too-Many
TCGA.AH.6643	8	22471823	24045694	559	-0.3124	NEUTRAL	NA	17	"BIN3,CCAR2,CHMP7,EGR3,ENTPD4,LOXL2,NKX2-6,NKX3-1,PEBP4,R3HCC1,RHOBTB2,SLC25A37,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D"
TCGA.AA.A00N.01A	8	22476393	23104161	64	-0.048	NEUTRAL	NA	10	"BIN3,CCAR2,CHMP7,EGR3,PEBP4,RHOBTB2,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D"
TCGA.AA.3819	8	22477584	144443211	35713	-0.0015	NEUTRAL	NA	467	Too-Many
TCGA.CK.5914.01A	8	22493982	23104161	58	0.0084	NEUTRAL	NA	9	"BIN3,CHMP7,EGR3,PEBP4,RHOBTB2,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D"
TCGA.AA.3939.01A	8	22502196	37756562	795	0.335	NEUTRAL	NA	80	"ADAM28,ADAM7,ADAMDEC1,ADGRA2,ADRA1A,BIN3,BNIP3L,BRF2,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,EGR3,ELP3,ENTPD4,EPHX2,ERLIN2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCNU1,KCTD9,KIF13B,LEPROTL1,LOXL2,MAK16,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PEBP4,PNMA2,PNOC,PPP2CB,PPP2R2A,PROSC,PTK2B,PURG,R3HCC1,RAB11FIP1,RBPMS,RHOBTB2,RNF122,SARAF,SCARA3,SCARA5,SLC25A37,SMIM18,STC1,STMN4,TEX15,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,TTI2,UBXN8,UNC5D,WRN,ZNF395,ZNF703"
TCGA.AG.3906.01A	8	22675112	22785068	3	-0.0825	NEUTRAL	NA	1	PEBP4
TCGA.AG.3891.01A	8	22873099	29207381	517	0.2482	NEUTRAL	NA	50	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BNIP3L,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GNRH1,HMBOX1,INTS9,KCTD9,KIF13B,LOXL2,NEFL,NEFM,NKX2-6,NKX3-1,NUGGC,PBK,PNMA2,PNOC,PPP2R2A,PTK2B,R3HCC1,RHOBTB2,SCARA3,SCARA5,SLC25A37,STC1,STMN4,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,ZNF395"
TCGA.AG.3906.01A	8	22881639	36768436	684	0.0166	NEUTRAL	NA	70	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BNIP3L,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCNU1,KCTD9,KIF13B,LEPROTL1,LOXL2,MAK16,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,R3HCC1,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SLC25A37,SMIM18,STC1,STMN4,TEX15,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,TTI2,UBXN8,UNC5D,WRN,ZNF395"
TCGA.AA.A010.01A	8	22884618	22900599	6	-0.2912	NEUTRAL	NA	1	TNFRSF10B
TCGA.AA.A01Q.01A	8	22885190	26365528	230	0.0892	NEUTRAL	NA	25	"ADAM28,ADAM7,ADAMDEC1,BNIP3L,CDCA2,CHMP7,DOCK5,EBF2,ENTPD4,GNRH1,KCTD9,LOXL2,NEFL,NEFM,NKX2-6,NKX3-1,PNMA2,PPP2R2A,R3HCC1,SLC25A37,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D"
TCGA.AF.3914.01A	8	22885190	43211851	1245	-0.4323	NEUTRAL	NA	125	Too-Many
TCGA.AG.4009.01A	8	22926217	23290408	47	-0.328	NEUTRAL	NA	8	"CHMP7,ENTPD4,LOXL2,R3HCC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D"
TCGA.AA.3662	8	22969090	36235569	4523	-0.4856	NEUTRAL	NA	68	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BNIP3L,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,LOXL2,MAK16,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,R3HCC1,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SLC25A37,SMIM18,STC1,STMN4,TEX15,TNFRSF10A,TNFRSF10C,TNFRSF10D,TRIM35,TTI2,UBXN8,UNC5D,WRN,ZNF395"
TCGA.AA.A010.01A	8	23112713	23156297	15	0.1317	NEUTRAL	NA	3	"CHMP7,LOXL2,R3HCC1"
TCGA.AG.3909.01A	8	23155499	23290408	14	-0.4825	NEUTRAL	NA	2	"ENTPD4,LOXL2"
TCGA.CK.5914.01A	8	23167144	23290408	10	0.1609	NEUTRAL	NA	2	"ENTPD4,LOXL2"
TCGA.AY.A71X	8	23167352	141123402	34675	0.0051	NEUTRAL	NA	426	Too-Many
TCGA.AG.A00C.01A	8	23174444	23225471	8	-0.2569	NEUTRAL	NA	1	LOXL2
TCGA.AG.A00C.01A	8	23290408	23711882	20	0.3316	NEUTRAL	NA	5	"ENTPD4,NKX2-6,NKX3-1,SLC25A37,STC1"
TCGA.AA.A010.01A	8	23291782	23307313	11	-0.3933	NEUTRAL	NA	1	ENTPD4
TCGA.D5.5539	8	23372037	95812057	19009	0	NEUTRAL	NA	283	Too-Many
TCGA.AA.A00N.01A	8	23386499	23711882	12	-0.4811	NEUTRAL	NA	4	"NKX2-6,NKX3-1,SLC25A37,STC1"
TCGA.CK.5914.01A	8	23386499	23711882	12	-0.2506	NEUTRAL	NA	4	"NKX2-6,NKX3-1,SLC25A37,STC1"
TCGA.AA.3850	8	23436322	23529866	50	-0.09415	NEUTRAL	NA	0	None
TCGA.AA.3811	8	23444386	24173938	248	0.1344	NEUTRAL	NA	4	"ADAM28,NKX2-6,NKX3-1,STC1"
TCGA.AA.3844	8	23478654	23693430	94	0.0199	NEUTRAL	NA	2	"NKX2-6,NKX3-1"
TCGA.AA.3972	8	23478654	90113945	17541	0.0282	NEUTRAL	NA	256	Too-Many
TCGA.AA.3850	8	23626756	23895253	84	-0.09985	NEUTRAL	NA	1	STC1
TCGA.AA.3941	8	23694486	24174529	131	0.0008	NEUTRAL	NA	2	"ADAM28,STC1"
TCGA.AA.3844	8	23694486	24722526	363	-0.469	NEUTRAL	NA	4	"ADAM28,ADAM7,ADAMDEC1,STC1"
TCGA.AA.3532	8	23775715	41201080	5495	-0.2876	NEUTRAL	NA	90	"ADAM18,ADAM2,ADAM28,ADAM32,ADAM7,ADAM9,ADAMDEC1,ADGRA2,ADRA1A,ADRB3,ASH2L,BAG4,BNIP3L,BRF2,C8orf4,C8orf86,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DDHD2,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,EIF4EBP1,ELP3,EPHX2,ERLIN2,ESCO2,EXTL3,FBXO16,FGFR1,FUT10,FZD3,GNRH1,GOT1L1,GSR,GTF2E2,HMBOX1,HTRA4,IDO1,IDO2,INTS9,KCNU1,KCTD9,KIF13B,LEPROTL1,LETM2,LSM1,MAK16,MBOAT4,NEFL,NEFM,NRG1,NUGGC,PBK,PLEKHA2,PNMA2,PNOC,PPAPDC1B,PPP2CB,PPP2R2A,PROSC,PTK2B,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SFRP1,SMIM18,STAR,STMN4,TACC1,TEX15,TM2D2,TRIM35,TTI2,UBXN8,UNC5D,WHSC1L1,WRN,ZMAT4,ZNF395,ZNF703"
TCGA.AH.6643	8	24045769	146293413	35271	0.3064	NEUTRAL	NA	514	Too-Many
TCGA.DC.6157	8	24137936	24450422	123	0.2226	NEUTRAL	NA	3	"ADAM28,ADAM7,ADAMDEC1"
TCGA.AG.3909.01A	8	24151588	24365972	60	-0.1694	NEUTRAL	NA	3	"ADAM28,ADAM7,ADAMDEC1"
TCGA.AG.A00C.01A	8	24151588	24771290	61	-0.3083	NEUTRAL	NA	4	"ADAM28,ADAM7,ADAMDEC1,NEFM"
TCGA.AA.A010.01A	8	24167635	24188611	9	-0.3467	NEUTRAL	NA	1	ADAM28
TCGA.AA.3811	8	24177242	24722526	230	-0.0818	NEUTRAL	NA	3	"ADAM28,ADAM7,ADAMDEC1"
TCGA.AA.3941	8	24177317	24442216	107	-0.1157	NEUTRAL	NA	3	"ADAM28,ADAM7,ADAMDEC1"
TCGA.AA.3509.01A	8	24177687	24333890	39	0.0074	NEUTRAL	NA	3	"ADAM28,ADAM7,ADAMDEC1"
TCGA.AA.A010.01A	8	24200557	24262712	21	-0.219	NEUTRAL	NA	2	"ADAM28,ADAMDEC1"
TCGA.AA.A010.01A	8	24298561	24326237	7	0.3351	NEUTRAL	NA	1	ADAM7
TCGA.CK.5914.01A	8	24298561	24326237	7	-0.073	NEUTRAL	NA	1	ADAM7
TCGA.AZ.4684.01A	8	24326237	30032552	423	-0.1614	NEUTRAL	NA	39	"ADAM7,ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GNRH1,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,MBOAT4,NEFL,NEFM,NUGGC,PBK,PNMA2,PNOC,PPP2R2A,PTK2B,SARAF,SCARA3,SCARA5,STMN4,TRIM35,ZNF395"
TCGA.AA.A010.01A	8	24333890	24365972	16	-0.4801	NEUTRAL	NA	1	ADAM7
TCGA.AA.3941	8	24460017	24709966	105	0.1209	NEUTRAL	NA	0	None
TCGA.AA.3982	8	24462581	31138126	2489	-0.4456	NEUTRAL	NA	47	"ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,MBOAT4,NEFL,NEFM,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,UBXN8,WRN,ZNF395"
TCGA.AA.3850	8	24710849	24886943	90	-0.09035	NEUTRAL	NA	2	"NEFL,NEFM"
TCGA.AA.3844	8	24723073	27667792	1231	-0.0035	NEUTRAL	NA	22	"ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DOCK5,DPYSL2,EBF2,EPHX2,ESCO2,GNRH1,KCTD9,NEFL,NEFM,PBK,PNMA2,PPP2R2A,PTK2B,SCARA3,STMN4,TRIM35"
TCGA.AA.3811	8	24723073	31138126	2379	0.3621	NEUTRAL	NA	47	"ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,MBOAT4,NEFL,NEFM,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,UBXN8,WRN,ZNF395"
TCGA.AA.A00F.01A	8	24773079	24775532	3	-0.2458	NEUTRAL	NA	1	NEFM
TCGA.AG.A00C.01A	8	24773079	24811668	6	0.3769	NEUTRAL	NA	2	"NEFL,NEFM"
TCGA.AG.A00C.01A	8	24812989	25279045	54	-0.2579	NEUTRAL	NA	3	"DOCK5,GNRH1,NEFL"
TCGA.AA.3850	8	24887520	25549680	235	0.24455	NEUTRAL	NA	4	"CDCA2,DOCK5,GNRH1,KCTD9"
TCGA.F4.6460	8	24913390	46924356	5502	-0.5082	NEUTRAL	NA	108	Too-Many
TCGA.CK.5914.01A	8	25042349	25292832	60	0.3199	NEUTRAL	NA	3	"DOCK5,GNRH1,KCTD9"
TCGA.F4.6459	8	25095057	40762262	4894	-0.0491	NEUTRAL	NA	84	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRA1A,ADRB3,ASH2L,BAG4,BNIP3L,BRF2,C8orf4,C8orf86,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DDHD2,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,EIF4EBP1,ELP3,EPHX2,ERLIN2,ESCO2,EXTL3,FBXO16,FGFR1,FUT10,FZD3,GNRH1,GOT1L1,GSR,GTF2E2,HMBOX1,HTRA4,IDO1,IDO2,INTS9,KCNU1,KCTD9,KIF13B,LEPROTL1,LETM2,LSM1,MAK16,MBOAT4,NRG1,NUGGC,PBK,PLEKHA2,PNMA2,PNOC,PPAPDC1B,PPP2CB,PPP2R2A,PROSC,PTK2B,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SMIM18,STAR,STMN4,TACC1,TEX15,TM2D2,TRIM35,TTI2,UBXN8,UNC5D,WHSC1L1,WRN,ZMAT4,ZNF395,ZNF703"
TCGA.AG.3909.01A	8	25101153	25287325	55	-0.1028	NEUTRAL	NA	3	"DOCK5,GNRH1,KCTD9"
TCGA.AG.4009.01A	8	25136032	25158071	5	-0.2066	NEUTRAL	NA	1	DOCK5
TCGA.AG.4009.01A	8	25190072	25234772	19	-0.2529	NEUTRAL	NA	1	DOCK5
TCGA.AA.A00N.01A	8	25276859	25298075	11	-0.2116	NEUTRAL	NA	2	"GNRH1,KCTD9"
TCGA.AA.A010.01A	8	25276859	25319543	16	-0.1944	NEUTRAL	NA	3	"CDCA2,GNRH1,KCTD9"
TCGA.AG.A00C.01A	8	25280676	25327355	16	0.1951	NEUTRAL	NA	3	"CDCA2,GNRH1,KCTD9"
TCGA.CM.5868	8	25317823	34382733	3211	-0.3652	NEUTRAL	NA	48	"ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DPYSL2,DUSP26,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MAK16,MBOAT4,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,TTI2,UBXN8,WRN,ZNF395"
TCGA.AG.3909.01A	8	25337379	25765942	17	-0.1441	NEUTRAL	NA	2	"CDCA2,EBF2"
TCGA.CK.5914.01A	8	25337379	25765942	17	0.2358	NEUTRAL	NA	2	"CDCA2,EBF2"
TCGA.AG.A00C.01A	8	25337379	26223779	31	-0.1267	NEUTRAL	NA	3	"CDCA2,EBF2,PPP2R2A"
TCGA.AA.A010.01A	8	25343213	25702060	6	-0.2099	NEUTRAL	NA	2	"CDCA2,EBF2"
TCGA.EI.6885	8	25407291	33264710	2907	-0.1428	NEUTRAL	NA	43	"ADRA1A,BNIP3L,CCDC25,CHRNA2,CLU,DCTN6,DPYSL2,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,UBXN8,WRN,ZNF395"
TCGA.AA.3850	8	25552769	25598400	15	-0.16125	NEUTRAL	NA	0	None
TCGA.AA.3941	8	25565281	25609835	19	0.073	NEUTRAL	NA	0	None
TCGA.AA.3941	8	25615705	25639328	10	-0.4664	NEUTRAL	NA	0	None
TCGA.AA.3850	8	25642181	26623400	429	0.19815	NEUTRAL	NA	6	"ADRA1A,BNIP3L,DPYSL2,EBF2,PNMA2,PPP2R2A"
TCGA.AA.3680	8	25715728	35755663	3419	-0.2832	NEUTRAL	NA	48	"ADRA1A,BNIP3L,CCDC25,CHRNA2,CLU,DCTN6,DPYSL2,DUSP26,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MAK16,MBOAT4,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,TTI2,UBXN8,UNC5D,WRN,ZNF395"
TCGA.CK.5914.01A	8	25890549	26484672	29	-0.5019	NEUTRAL	NA	5	"BNIP3L,DPYSL2,EBF2,PNMA2,PPP2R2A"
TCGA.AA.3941	8	26007893	26021964	10	0.1763	NEUTRAL	NA	0	None
TCGA.AZ.6599	8	26023647	146293413	34547	0.0117	NEUTRAL	NA	504	Too-Many
TCGA.AG.A00C.01A	8	26227603	26441268	10	0.3601	NEUTRAL	NA	4	"BNIP3L,DPYSL2,PNMA2,PPP2R2A"
TCGA.CA.6715	8	26360365	27814482	671	0.0336	NEUTRAL	NA	14	"ADRA1A,CCDC25,CHRNA2,CLU,DPYSL2,EPHX2,ESCO2,PBK,PNMA2,PTK2B,SCARA3,SCARA5,STMN4,TRIM35"
TCGA.AG.A00C.01A	8	26481608	27099148	20	-0.2906	NEUTRAL	NA	3	"ADRA1A,DPYSL2,STMN4"
TCGA.AG.3909.01A	8	26481608	27101137	22	-0.1142	NEUTRAL	NA	3	"ADRA1A,DPYSL2,STMN4"
TCGA.AG.4009.01A	8	26481608	29197567	255	-0.3855	NEUTRAL	NA	24	"ADRA1A,CCDC25,CHRNA2,CLU,DPYSL2,DUSP4,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,HMBOX1,INTS9,KIF13B,NUGGC,PBK,PNOC,PTK2B,SCARA3,SCARA5,STMN4,TRIM35,ZNF395"
TCGA.AA.A01Q.01A	8	26485323	27279779	28	0.1877	NEUTRAL	NA	5	"ADRA1A,DPYSL2,PTK2B,STMN4,TRIM35"
TCGA.AA.A00Q.01A	8	26485323	27297707	43	-0.1436	NEUTRAL	NA	5	"ADRA1A,DPYSL2,PTK2B,STMN4,TRIM35"
TCGA.CK.5914.01A	8	26485323	27629944	101	0.2243	NEUTRAL	NA	10	"ADRA1A,CCDC25,CHRNA2,CLU,DPYSL2,EPHX2,PTK2B,SCARA3,STMN4,TRIM35"
TCGA.G4.6322	8	26600079	28038055	653	-0.1619	NEUTRAL	NA	14	"ADRA1A,CCDC25,CHRNA2,CLU,ELP3,EPHX2,ESCO2,NUGGC,PBK,PTK2B,SCARA3,SCARA5,STMN4,TRIM35"
TCGA.AA.3850	8	26623867	27076597	200	-0.12695	NEUTRAL	NA	1	ADRA1A
TCGA.AA.3941	8	27062904	27076597	8	-0.0074	NEUTRAL	NA	0	None
TCGA.AA.3850	8	27093494	30719033	1262	0.29085	NEUTRAL	NA	33	"CCDC25,CHRNA2,CLU,DCTN6,DUSP4,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NUGGC,PBK,PNOC,PPP2CB,PTK2B,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,UBXN8,ZNF395"
TCGA.AG.A00C.01A	8	27099865	27168266	8	0.1253	NEUTRAL	NA	2	"STMN4,TRIM35"
TCGA.AA.A00N.01A	8	27145019	27155948	5	-0.4374	NEUTRAL	NA	1	TRIM35
TCGA.AG.3909.01A	8	27168266	27327238	33	-0.0092	NEUTRAL	NA	3	"CHRNA2,PTK2B,TRIM35"
TCGA.AA.A01Q.01A	8	27287600	27467952	57	-0.171	NEUTRAL	NA	4	"CHRNA2,CLU,EPHX2,PTK2B"
TCGA.AG.A01J.01A	8	27294605	40389649	685	-0.4528	NEUTRAL	NA	72	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CCDC25,CHRNA2,CLU,DCTN6,DDHD2,DUSP26,DUSP4,EIF4EBP1,ELP3,EPHX2,ERLIN2,ESCO2,EXTL3,FBXO16,FGFR1,FUT10,FZD3,GOT1L1,GSR,GTF2E2,HMBOX1,HTRA4,IDO1,IDO2,INTS9,KCNU1,KIF13B,LEPROTL1,LETM2,LSM1,MAK16,MBOAT4,NRG1,NUGGC,PBK,PLEKHA2,PNOC,PPAPDC1B,PPP2CB,PROSC,PTK2B,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SMIM18,STAR,TACC1,TEX15,TM2D2,TTI2,UBXN8,UNC5D,WHSC1L1,WRN,ZMAT4,ZNF395,ZNF703"
TCGA.AA.A00O.01A	8	27294605	41563609	732	-0.0315	NEUTRAL	NA	78	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CCDC25,CHRNA2,CLU,DCTN6,DDHD2,DUSP26,DUSP4,EIF4EBP1,ELP3,EPHX2,ERLIN2,ESCO2,EXTL3,FBXO16,FGFR1,FUT10,FZD3,GINS4,GOLGA7,GOT1L1,GSR,GTF2E2,HMBOX1,HTRA4,IDO1,IDO2,INTS9,KCNU1,KIF13B,LEPROTL1,LETM2,LSM1,MAK16,MBOAT4,NKX6-3,NRG1,NUGGC,PBK,PLEKHA2,PNOC,PPAPDC1B,PPP2CB,PROSC,PTK2B,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SFRP1,SMIM18,STAR,TACC1,TEX15,TM2D2,TTI2,UBXN8,UNC5D,WHSC1L1,WRN,ZMAT4,ZNF395,ZNF703"
TCGA.AA.A00Q.01A	8	27300385	38264833	424	0.1751	NEUTRAL	NA	58	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,CCDC25,CHRNA2,CLU,DCTN6,DDHD2,DUSP26,DUSP4,EIF4EBP1,ELP3,EPHX2,ERLIN2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GOT1L1,GSR,GTF2E2,HMBOX1,INTS9,KCNU1,KIF13B,LEPROTL1,LETM2,LSM1,MAK16,MBOAT4,NRG1,NUGGC,PBK,PNOC,PPAPDC1B,PPP2CB,PROSC,PTK2B,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SMIM18,STAR,TEX15,TTI2,UBXN8,UNC5D,WHSC1L1,WRN,ZNF395,ZNF703"
TCGA.AG.A00C.01A	8	27301665	33342631	326	-0.1155	NEUTRAL	NA	35	"CCDC25,CHRNA2,CLU,DCTN6,DUSP4,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NRG1,NUGGC,PBK,PNOC,PPP2CB,PTK2B,PURG,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,TEX15,UBXN8,WRN,ZNF395"
TCGA.AA.A00N.01A	8	27358398	27690555	60	0.0633	NEUTRAL	NA	6	"CCDC25,CLU,EPHX2,ESCO2,PBK,SCARA3"
TCGA.AG.3909.01A	8	27369289	27401929	14	0.118	NEUTRAL	NA	1	EPHX2
TCGA.AA.A010.01A	8	27455686	27622644	24	-0.042	NEUTRAL	NA	3	"CCDC25,CLU,SCARA3"
TCGA.AA.A01Q.01A	8	27472130	37635459	292	0.15	NEUTRAL	NA	41	"CCDC25,CLU,DCTN6,DUSP26,DUSP4,ELP3,ERLIN2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KCNU1,KIF13B,LEPROTL1,MAK16,MBOAT4,NRG1,NUGGC,PBK,PNOC,PPP2CB,PROSC,PURG,RBPMS,RNF122,SARAF,SCARA3,SCARA5,SMIM18,TEX15,TTI2,UBXN8,UNC5D,WRN,ZNF395,ZNF703"
TCGA.CM.4747	8	27536915	53050298	5675	0.265	NEUTRAL	NA	103	Too-Many
TCGA.AA.3844	8	27673403	69087028	10226	-0.1635	NEUTRAL	NA	162	Too-Many
TCGA.AG.3909.01A	8	27729403	29194541	135	-0.205	NEUTRAL	NA	12	"DUSP4,ELP3,EXTL3,FBXO16,FZD3,HMBOX1,INTS9,KIF13B,NUGGC,PNOC,SCARA5,ZNF395"
TCGA.AG.3882	8	27758375	146293413	33792	-0.0152	NEUTRAL	NA	489	Too-Many
TCGA.CK.5914.01A	8	27913439	33342631	254	0.0851	NEUTRAL	NA	26	"DCTN6,DUSP4,ELP3,EXTL3,FBXO16,FUT10,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NRG1,NUGGC,PNOC,PPP2CB,PURG,RBPMS,SARAF,SMIM18,TEX15,UBXN8,WRN,ZNF395"
TCGA.AA.A010.01A	8	28210053	28600575	25	-0.1221	NEUTRAL	NA	4	"EXTL3,FBXO16,FZD3,ZNF395"
TCGA.D5.6533	8	28218892	28241710	6	-0.2647	NEUTRAL	NA	1	ZNF395
TCGA.CI.6624	8	28227143	30032147	530	-0.3992	NEUTRAL	NA	12	"DCTN6,DUSP4,EXTL3,FBXO16,FZD3,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,SARAF,ZNF395"
TCGA.AF.6672	8	28312894	35454576	2177	-0.3974	NEUTRAL	NA	27	"DCTN6,DUSP26,DUSP4,EXTL3,FBXO16,FUT10,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MAK16,MBOAT4,NRG1,PPP2CB,PURG,RBPMS,RNF122,SARAF,SMIM18,TEX15,TTI2,UBXN8,UNC5D,WRN"
TCGA.G4.6322	8	28546682	31237832	799	-0.1585	NEUTRAL	NA	18	"DCTN6,DUSP4,EXTL3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,PPP2CB,PURG,RBPMS,SARAF,SMIM18,TEX15,UBXN8,WRN"
TCGA.DC.6682	8	28580961	37834311	2630	-0.1914	NEUTRAL	NA	34	"ADGRA2,ADRB3,BRF2,DCTN6,DUSP26,DUSP4,ERLIN2,EXTL3,FUT10,GOT1L1,GSR,GTF2E2,HMBOX1,INTS9,KCNU1,KIF13B,LEPROTL1,MAK16,MBOAT4,NRG1,PPP2CB,PROSC,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SMIM18,TEX15,TTI2,UBXN8,UNC5D,WRN,ZNF703"
TCGA.AA.A010.01A	8	28645280	28876237	16	0.0627	NEUTRAL	NA	2	"HMBOX1,INTS9"
TCGA.D5.6533	8	28657997	29114900	88	0.1885	NEUTRAL	NA	3	"HMBOX1,INTS9,KIF13B"
TCGA.AZ.4682	8	28823094	82795879	13790	0.2919	NEUTRAL	NA	201	Too-Many
TCGA.CA.6715	8	28967876	29254090	78	0.0266	NEUTRAL	NA	2	"DUSP4,KIF13B"
TCGA.D5.6930	8	29315424	29913869	226	0.0107	NEUTRAL	NA	0	None
TCGA.CM.6676	8	29419563	36598931	2061	-0.2568	NEUTRAL	NA	20	"DCTN6,DUSP26,FUT10,GSR,GTF2E2,LEPROTL1,MAK16,MBOAT4,NRG1,PPP2CB,PURG,RBPMS,RNF122,SARAF,SMIM18,TEX15,TTI2,UBXN8,UNC5D,WRN"
TCGA.CK.5912	8	29442742	30323487	307	0.0392	NEUTRAL	NA	5	"DCTN6,LEPROTL1,MBOAT4,RBPMS,SARAF"
TCGA.F4.6809	8	29494884	146293413	33103	-4.00E-04	NEUTRAL	NA	477	Too-Many
TCGA.AG.3896	8	29687192	37718893	2287	0.3342	NEUTRAL	NA	27	"ADGRA2,BRF2,DCTN6,DUSP26,ERLIN2,FUT10,GSR,GTF2E2,KCNU1,LEPROTL1,MAK16,MBOAT4,NRG1,PPP2CB,PROSC,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SMIM18,TEX15,TTI2,UBXN8,UNC5D,WRN,ZNF703"
TCGA.EI.6511	8	29746740	31310045	466	0.3551	NEUTRAL	NA	13	"DCTN6,GSR,GTF2E2,LEPROTL1,MBOAT4,PPP2CB,PURG,RBPMS,SARAF,SMIM18,TEX15,UBXN8,WRN"
TCGA.D5.6930	8	29925580	132900936	28153	0.0008	NEUTRAL	NA	365	Too-Many
TCGA.AA.A010.01A	8	29989472	30541555	31	0.3751	NEUTRAL	NA	7	"DCTN6,GSR,GTF2E2,LEPROTL1,MBOAT4,RBPMS,SMIM18"
TCGA.AG.3909.01A	8	29989472	33318854	110	-0.2838	NEUTRAL	NA	14	"DCTN6,FUT10,GSR,GTF2E2,LEPROTL1,MBOAT4,NRG1,PPP2CB,PURG,RBPMS,SMIM18,TEX15,UBXN8,WRN"
TCGA.CI.6624	8	30045553	30175380	51	-0.0364	NEUTRAL	NA	0	None
TCGA.DM.A28H	8	30099393	35782277	1712	-0.0421	NEUTRAL	NA	16	"DUSP26,FUT10,GSR,GTF2E2,MAK16,NRG1,PPP2CB,PURG,RBPMS,RNF122,SMIM18,TEX15,TTI2,UBXN8,UNC5D,WRN"
TCGA.CI.6624	8	30176240	30322255	51	-0.3719	NEUTRAL	NA	1	RBPMS
TCGA.D5.6541	8	30221755	32692337	892	0.0309	NEUTRAL	NA	10	"GSR,GTF2E2,NRG1,PPP2CB,PURG,RBPMS,SMIM18,TEX15,UBXN8,WRN"
TCGA.CA.6715	8	30285090	30405905	36	0.0634	NEUTRAL	NA	1	RBPMS
TCGA.CI.6624	8	30322734	146293413	32848	0.1939	NEUTRAL	NA	473	Too-Many
TCGA.A6.5666	8	30393333	54937830	5239	0.2588	NEUTRAL	NA	91	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,ATP6V1H,BAG4,BRF2,C8orf22,C8orf4,C8orf86,CEBPD,CHRNA6,CHRNB3,DDHD2,DKK4,DUSP26,EFCAB1,EIF4EBP1,ERLIN2,FAM150A,FGFR1,FNTA,FUT10,GINS4,GOLGA7,GOT1L1,GSR,GTF2E2,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MAK16,MCM4,NKX6-3,NPBWR1,NRG1,OPRK1,PCMTD1,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PPP2CB,PRKDC,PROSC,PURG,PXDNL,RAB11FIP1,RB1CC1,RBPMS,RGS20,RNF122,RNF170,SFRP1,SLC20A2,SMIM18,SMIM19,SNAI2,SNTG1,SPIDR,ST18,STAR,TACC1,TCEA1,TEX15,THAP1,TM2D2,TTI2,UBE2V2,UBXN8,UNC5D,VDAC3,WHSC1L1,WRN,ZMAT4,ZNF703"
TCGA.DY.A0XA	8	30454131	30717451	42	-0.3975	NEUTRAL	NA	6	"GSR,GTF2E2,PPP2CB,SMIM18,TEX15,UBXN8"
TCGA.AA.A00N.01A	8	30492497	30915911	38	-0.0975	NEUTRAL	NA	8	"GSR,GTF2E2,PPP2CB,PURG,SMIM18,TEX15,UBXN8,WRN"
TCGA.A6.2677	8	30522957	33997050	1006	0.1656	NEUTRAL	NA	12	"DUSP26,FUT10,GSR,MAK16,NRG1,PPP2CB,PURG,RNF122,TEX15,TTI2,UBXN8,WRN"
TCGA.AA.A010.01A	8	30546640	30569491	8	-0.3866	NEUTRAL	NA	1	GSR
TCGA.A6.5656	8	30574939	30867265	76	0.0139	NEUTRAL	NA	5	"GSR,PPP2CB,PURG,TEX15,UBXN8"
TCGA.D5.6923	8	30583580	30584653	3	-0.4178	NEUTRAL	NA	1	GSR
TCGA.AA.A010.01A	8	30601652	30643701	9	0.2976	NEUTRAL	NA	2	"PPP2CB,UBXN8"
TCGA.AZ.4684.01A	8	30620730	32600173	57	0.3517	NEUTRAL	NA	6	"NRG1,PPP2CB,PURG,TEX15,UBXN8,WRN"
TCGA.AG.3891.01A	8	30643701	33342631	69	0.0961	NEUTRAL	NA	6	"FUT10,NRG1,PPP2CB,PURG,TEX15,WRN"
TCGA.AA.3509.01A	8	30651411	30942632	22	-0.3769	NEUTRAL	NA	4	"PPP2CB,PURG,TEX15,WRN"
TCGA.AA.3850	8	30732493	31355171	200	-0.02705	NEUTRAL	NA	2	"PURG,WRN"
TCGA.AA.A01T	8	30767834	39830699	2317	-0.2727	NEUTRAL	NA	39	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,MAK16,NRG1,PLEKHA2,PPAPDC1B,PROSC,PURG,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,WRN,ZNF703"
TCGA.AA.A00N.01A	8	30916631	30925752	5	0.3776	NEUTRAL	NA	1	WRN
TCGA.AA.A010.01A	8	30924507	35579676	84	0.2479	NEUTRAL	NA	8	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2,UNC5D,WRN"
TCGA.DM.A28M.01A	8	30954264	39068613	347	-0.1366	NEUTRAL	NA	34	"ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,MAK16,NRG1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,WRN,ZNF703"
TCGA.AG.4009.01A	8	30977711	31007860	10	0.0987	NEUTRAL	NA	1	WRN
TCGA.AA.3862.01A	8	31004555	87655942	1865	-0.0689	NEUTRAL	NA	201	Too-Many
TCGA.AA.3811	8	31140869	36904514	1614	-0.0025	NEUTRAL	NA	8	"DUSP26,FUT10,KCNU1,MAK16,NRG1,RNF122,TTI2,UNC5D"
TCGA.AA.3854	8	31252143	103278687	18383	0.0237	NEUTRAL	NA	269	Too-Many
TCGA.AG.A026	8	31257200	32139732	347	-0.0192	NEUTRAL	NA	1	NRG1
TCGA.AA.3941	8	31276364	31736624	141	-0.0364	NEUTRAL	NA	1	NRG1
TCGA.AZ.5403	8	31296913	31629499	100	0.2243	NEUTRAL	NA	1	NRG1
TCGA.D5.6533	8	31409336	40181977	2295	0.1288	NEUTRAL	NA	38	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,MAK16,NRG1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,ZNF703"
TCGA.A6.2671	8	31578884	32014211	184	-0.2187	NEUTRAL	NA	1	NRG1
TCGA.D5.6926	8	31630982	33410076	673	-0.0088	NEUTRAL	NA	5	"FUT10,MAK16,NRG1,RNF122,TTI2"
TCGA.AA.3941	8	31749085	31971618	109	0.1294	NEUTRAL	NA	1	NRG1
TCGA.DC.6157	8	31749085	97347140	16386	0.2744	NEUTRAL	NA	239	Too-Many
TCGA.AA.3982	8	31812145	32844249	457	-0.4181	NEUTRAL	NA	1	NRG1
TCGA.AA.3941	8	31995957	32098329	48	-0.1547	NEUTRAL	NA	1	NRG1
TCGA.AA.3850	8	32133258	33882741	540	-0.10305	NEUTRAL	NA	6	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2"
TCGA.G5.6233	8	32139732	146293413	32307	0.3549	NEUTRAL	NA	464	Too-Many
TCGA.AA.3529	8	32217553	33891598	490	0.2939	NEUTRAL	NA	6	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2"
TCGA.G5.6641	8	32234112	40259771	1994	-0.2096	NEUTRAL	NA	38	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,MAK16,NRG1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,ZNF703"
TCGA.A6.2671	8	32255797	33748816	448	-0.2905	NEUTRAL	NA	6	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2"
TCGA.AG.A023.01A	8	32453332	38125380	183	0.1628	NEUTRAL	NA	23	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FUT10,GOT1L1,KCNU1,LSM1,MAK16,NRG1,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TTI2,UNC5D,ZNF703"
TCGA.AA.A017.01A	8	32453332	68092033	1232	-0.0939	NEUTRAL	NA	133	Too-Many
TCGA.F4.6461	8	32540659	146293413	32033	0.0034	NEUTRAL	NA	464	Too-Many
TCGA.AG.A036.01A	8	32572911	40802205	412	-0.3209	NEUTRAL	NA	39	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,MAK16,NRG1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,ZMAT4,ZNF703"
TCGA.AZ.4684.01A	8	32607044	38883265	294	-0.2463	NEUTRAL	NA	32	"ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,MAK16,NRG1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,ZNF703"
TCGA.AA.A00L.01A	8	32611843	42623435	457	0.1137	NEUTRAL	NA	56	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MAK16,NKX6-3,NRG1,PLAT,PLEKHA2,POLB,PPAPDC1B,PROSC,RAB11FIP1,RNF122,SFRP1,SLC20A2,SMIM19,STAR,TACC1,TM2D2,TTI2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.AA.3941	8	32624827	32854505	59	-0.0492	NEUTRAL	NA	0	None
TCGA.D5.6541	8	32695788	39167859	1447	-0.4733	NEUTRAL	NA	32	"ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,MAK16,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,ZNF703"
TCGA.CM.5344	8	32718288	39823144	1546	-0.2333	NEUTRAL	NA	36	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,MAK16,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,ZNF703"
TCGA.F5.6813	8	32761711	34515550	438	-0.1565	NEUTRAL	NA	5	"DUSP26,FUT10,MAK16,RNF122,TTI2"
TCGA.AF.6136	8	32864556	146293413	31945	0.0002	NEUTRAL	NA	463	Too-Many
TCGA.AA.3941	8	32908690	33235361	87	0.1801	NEUTRAL	NA	1	FUT10
TCGA.AA.3548	8	32913287	146293413	31999	0.1952	NEUTRAL	NA	463	Too-Many
TCGA.G4.6315	8	32998984	146293413	31972	0	NEUTRAL	NA	463	Too-Many
TCGA.EI.7004	8	33004630	136486951	28774	0.0017	NEUTRAL	NA	365	Too-Many
TCGA.AG.3885	8	33154178	41455003	2087	0.0043	NEUTRAL	NA	42	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,MAK16,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,SFRP1,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,ZMAT4,ZNF703"
TCGA.QG.A5Z1	8	33168974	33583626	93	-0.0372	NEUTRAL	NA	5	"DUSP26,FUT10,MAK16,RNF122,TTI2"
TCGA.EI.6883	8	33168974	37667017	1089	-0.0262	NEUTRAL	NA	11	"ADGRA2,DUSP26,ERLIN2,FUT10,KCNU1,MAK16,PROSC,RNF122,TTI2,UNC5D,ZNF703"
TCGA.CM.6172	8	33203725	34245284	249	3.00E-04	NEUTRAL	NA	5	"DUSP26,FUT10,MAK16,RNF122,TTI2"
TCGA.AA.A00N.01A	8	33230056	33318854	4	0.1595	NEUTRAL	NA	1	FUT10
TCGA.G4.6626	8	33235361	34843273	406	-0.4545	NEUTRAL	NA	5	"DUSP26,FUT10,MAK16,RNF122,TTI2"
TCGA.CM.6675	8	33238980	46924356	2415	-0.1103	NEUTRAL	NA	62	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FNTA,FUT10,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MAK16,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF122,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,TTI2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.F5.6571	8	33264710	50317344	2925	0.0221	NEUTRAL	NA	70	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf22,C8orf4,C8orf86,CEBPD,CHRNA6,CHRNB3,DDHD2,DKK4,DUSP26,EFCAB1,EIF4EBP1,ERLIN2,FGFR1,FNTA,FUT10,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MAK16,MCM4,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PRKDC,PROSC,RAB11FIP1,RNF122,RNF170,SFRP1,SLC20A2,SMIM19,SNAI2,SPIDR,STAR,TACC1,THAP1,TM2D2,TTI2,UBE2V2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.EI.6885	8	33268654	33451129	44	0.1526	NEUTRAL	NA	5	"DUSP26,FUT10,MAK16,RNF122,TTI2"
TCGA.AY.4070	8	33269744	79765952	11463	0.2997	NEUTRAL	NA	167	Too-Many
TCGA.AA.A00F.01A	8	33318854	33454772	25	-0.33	NEUTRAL	NA	5	"DUSP26,FUT10,MAK16,RNF122,TTI2"
TCGA.AG.4009.01A	8	33342631	33454772	23	0.0984	NEUTRAL	NA	4	"DUSP26,MAK16,RNF122,TTI2"
TCGA.AA.A00D.01A	8	33357798	35563432	23	-0.1078	NEUTRAL	NA	5	"DUSP26,MAK16,RNF122,TTI2,UNC5D"
TCGA.CK.5914.01A	8	33361259	35425565	16	-0.0496	NEUTRAL	NA	4	"DUSP26,RNF122,TTI2,UNC5D"
TCGA.AA.A00N.01A	8	33406220	33454772	9	-0.2796	NEUTRAL	NA	2	"DUSP26,RNF122"
TCGA.D5.6926	8	33412035	38133792	1064	-0.4989	NEUTRAL	NA	20	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,DUSP26,EIF4EBP1,ERLIN2,GOT1L1,KCNU1,LSM1,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,UNC5D,WHSC1L1,ZNF703"
TCGA.D5.5541	8	33422506	36603584	708	-0.3312	NEUTRAL	NA	3	"DUSP26,RNF122,UNC5D"
TCGA.AG.3891.01A	8	33454772	36792985	46	0.1248	NEUTRAL	NA	3	"DUSP26,KCNU1,UNC5D"
TCGA.DC.6683	8	33479495	38741174	1174	-0.0447	NEUTRAL	NA	22	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,UNC5D,WHSC1L1,ZNF703"
TCGA.F4.6854	8	33497650	146293413	31773	0.0329	NEUTRAL	NA	458	Too-Many
TCGA.CM.5862	8	33524178	35041360	411	-0.1244	NEUTRAL	NA	0	None
TCGA.AA.3952	8	33701437	36904899	731	-0.0132	NEUTRAL	NA	2	"KCNU1,UNC5D"
TCGA.DM.A285	8	33713342	34537362	223	-0.0802	NEUTRAL	NA	0	None
TCGA.CM.6166	8	33764920	38817411	1141	0.3654	NEUTRAL	NA	23	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,UNC5D,WHSC1L1,ZNF703"
TCGA.AA.3941	8	33780271	36627807	648	-0.0972	NEUTRAL	NA	1	UNC5D
TCGA.CA.5254	8	33806909	34463859	187	-0.4281	NEUTRAL	NA	0	None
TCGA.AA.3850	8	33883696	36852184	682	-0.50325	NEUTRAL	NA	2	"KCNU1,UNC5D"
TCGA.EF.5830	8	33969057	35362477	377	-0.2381	NEUTRAL	NA	1	UNC5D
TCGA.AZ.5403	8	33994284	37834311	921	0.1943	NEUTRAL	NA	10	"ADGRA2,ADRB3,BRF2,ERLIN2,GOT1L1,KCNU1,PROSC,RAB11FIP1,UNC5D,ZNF703"
TCGA.5M.AATA	8	34141426	34618762	136	-0.2162	NEUTRAL	NA	0	None
TCGA.AF.6655	8	34319935	117135528	20939	0.34	NEUTRAL	NA	293	Too-Many
TCGA.CM.5349	8	34323369	39974033	1230	-0.0205	NEUTRAL	NA	31	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,UNC5D,WHSC1L1,ZNF703"
TCGA.AY.5543	8	34353745	146293413	31386	-0.0003	NEUTRAL	NA	458	Too-Many
TCGA.AA.3549	8	34375122	35356132	242	-0.0277	NEUTRAL	NA	1	UNC5D
TCGA.CM.5868	8	34388826	40674844	1535	-0.0311	NEUTRAL	NA	33	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,UNC5D,WHSC1L1,ZMAT4,ZNF703"
TCGA.AA.3971	8	34405896	41022993	1648	0.0059	NEUTRAL	NA	33	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,UNC5D,WHSC1L1,ZMAT4,ZNF703"
TCGA.CA.5254	8	34487890	128604413	25034	0.3246	NEUTRAL	NA	341	Too-Many
TCGA.DT.5265	8	34550798	146293413	31523	0.0312	NEUTRAL	NA	458	Too-Many
TCGA.G4.6322	8	34568014	108641183	18885	-8.00E-04	NEUTRAL	NA	280	Too-Many
TCGA.AA.3678	8	34584840	146293413	31578	0.3025	NEUTRAL	NA	458	Too-Many
TCGA.DC.4749	8	34592482	115721303	20512	0.1149	NEUTRAL	NA	292	Too-Many
TCGA.AA.A03J	8	34619066	146293413	30911	0.0004	NEUTRAL	NA	458	Too-Many
TCGA.DY.A1DC	8	34637922	39555657	990	0.3733	NEUTRAL	NA	28	"ADAM18,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,UNC5D,WHSC1L1,ZNF703"
TCGA.F5.6813	8	34700487	37149747	574	-0.1942	NEUTRAL	NA	2	"KCNU1,UNC5D"
TCGA.G4.6626	8	34843711	34857475	8	-0.1428	NEUTRAL	NA	0	None
TCGA.DC.6154	8	34875613	52125251	2943	0.1856	NEUTRAL	NA	66	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf22,C8orf4,C8orf86,CEBPD,CHRNA6,CHRNB3,DDHD2,DKK4,EFCAB1,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MCM4,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PRKDC,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,SNAI2,SNTG1,SPIDR,STAR,TACC1,THAP1,TM2D2,UBE2V2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.A6.6652	8	34897586	49705758	2340	-0.014	NEUTRAL	NA	63	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CEBPD,CHRNA6,CHRNB3,DDHD2,DKK4,EFCAB1,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MCM4,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PRKDC,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,SPIDR,STAR,TACC1,THAP1,TM2D2,UBE2V2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.A6.6650	8	34926131	35374131	88	0.2305	NEUTRAL	NA	1	UNC5D
TCGA.F5.6464	8	34978644	42654229	1890	-0.0557	NEUTRAL	NA	50	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,PPAPDC1B,PROSC,RAB11FIP1,SFRP1,SLC20A2,SMIM19,STAR,TACC1,TM2D2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.A6.2677	8	34998135	36775357	309	0.0274	NEUTRAL	NA	2	"KCNU1,UNC5D"
TCGA.EI.6511	8	35005173	146293413	31418	0.3581	NEUTRAL	NA	458	Too-Many
TCGA.5M.AATA	8	35021410	35825292	167	-0.1449	NEUTRAL	NA	1	UNC5D
TCGA.DC.4745	8	35056596	114141087	20032	-0.0636	NEUTRAL	NA	292	Too-Many
TCGA.AZ.6600	8	35209220	35515577	79	0.1896	NEUTRAL	NA	1	UNC5D
TCGA.AA.3848	8	35231703	146293413	31416	0	NEUTRAL	NA	458	Too-Many
TCGA.F4.6463	8	35247296	37582992	562	0.2777	NEUTRAL	NA	3	"KCNU1,UNC5D,ZNF703"
TCGA.DM.A285	8	35323094	35490485	52	0.0224	NEUTRAL	NA	1	UNC5D
TCGA.AA.3867	8	35356132	38029707	574	0.0574	NEUTRAL	NA	14	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,KCNU1,LSM1,PROSC,RAB11FIP1,STAR,UNC5D,ZNF703"
TCGA.EF.5830	8	35374131	43679529	1880	0.222	NEUTRAL	NA	57	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.CM.6163	8	35374131	60824301	5617	-0.0296	NEUTRAL	NA	97	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,ATP6V1H,BAG4,BRF2,C8orf22,C8orf4,C8orf86,CEBPD,CHCHD7,CHRNA6,CHRNB3,CYP7A1,DDHD2,DKK4,EFCAB1,EIF4EBP1,ERLIN2,FAM110B,FAM150A,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,IMPAD1,KAT6A,KCNU1,LETM2,LSM1,LYN,LYPLA1,MCM4,MOS,MRPL15,NKX6-3,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PRKDC,PROSC,PXDNL,RAB11FIP1,RB1CC1,RGS20,RNF170,RP1,RPS20,SDCBP,SDR16C5,SFRP1,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,STAR,TACC1,TCEA1,TGS1,THAP1,TM2D2,TMEM68,TOX,UBE2V2,UBXN2B,UNC5D,VDAC3,WHSC1L1,XKR4,ZMAT4,ZNF703"
TCGA.A6.5662	8	35374323	35411757	14	0.3709	NEUTRAL	NA	1	UNC5D
TCGA.A6.6650	8	35374323	76590380	9373	-0.0862	NEUTRAL	NA	157	Too-Many
TCGA.A6.6648	8	35395852	137677674	28722	0.3449	NEUTRAL	NA	360	Too-Many
TCGA.AG.4009.01A	8	35401936	36641892	18	-0.4331	NEUTRAL	NA	2	"KCNU1,UNC5D"
TCGA.AG.A00C.01A	8	35401936	37554636	46	-0.2301	NEUTRAL	NA	3	"KCNU1,UNC5D,ZNF703"
TCGA.AG.3611.01A	8	35401936	95778780	1544	-0.1691	NEUTRAL	NA	223	Too-Many
TCGA.AG.3909.01A	8	35406759	37555623	47	0.1638	NEUTRAL	NA	3	"KCNU1,UNC5D,ZNF703"
TCGA.AF.6672	8	35467286	35586920	35	0.2928	NEUTRAL	NA	1	UNC5D
TCGA.G4.6311	8	35532436	81095370	11288	0.3002	NEUTRAL	NA	166	Too-Many
TCGA.AA.A010.01A	8	35583632	37555623	39	-0.4125	NEUTRAL	NA	3	"KCNU1,UNC5D,ZNF703"
TCGA.AF.6672	8	35591147	35630101	17	-0.3157	NEUTRAL	NA	1	UNC5D
TCGA.A6.5662	8	35621389	35935824	37	-0.2451	NEUTRAL	NA	1	UNC5D
TCGA.AF.6672	8	35648979	35756734	13	-0.3161	NEUTRAL	NA	1	UNC5D
TCGA.AZ.6600	8	35721526	42592302	1707	-0.3825	NEUTRAL	NA	48	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,PPAPDC1B,PROSC,RAB11FIP1,SFRP1,SLC20A2,SMIM19,STAR,TACC1,TM2D2,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.AA.3680	8	35756734	146293413	31289	0.0018	NEUTRAL	NA	457	Too-Many
TCGA.AF.6672	8	35782277	131861001	26021	0.365	NEUTRAL	NA	345	Too-Many
TCGA.AG.4008	8	35825292	43778913	1778	-0.2046	NEUTRAL	NA	56	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.AA.3549	8	35916717	36764934	153	-0.0187	NEUTRAL	NA	1	KCNU1
TCGA.AG.3602	8	35922433	146293413	31133	0.0049	NEUTRAL	NA	457	Too-Many
TCGA.AA.A01S	8	35922812	36880801	181	0.00375	NEUTRAL	NA	1	KCNU1
TCGA.DM.A285	8	35956155	36789732	152	-0.1799	NEUTRAL	NA	1	KCNU1
TCGA.DM.A28H	8	36047106	36478793	76	-0.0015	NEUTRAL	NA	0	None
TCGA.AA.3660	8	36079436	38165071	446	0.0275	NEUTRAL	NA	17	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,GOT1L1,KCNU1,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,WHSC1L1,ZNF703"
TCGA.A6.3807	8	36163912	36447016	50	-0.1476	NEUTRAL	NA	0	None
TCGA.D5.6932	8	36235569	146293413	31131	0.0586	NEUTRAL	NA	457	Too-Many
TCGA.AA.3662	8	36256427	40636041	1120	0.3329	NEUTRAL	NA	32	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4,ZNF703"
TCGA.CA.5797	8	36294079	41275970	1318	0.3369	NEUTRAL	NA	33	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,SFRP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4,ZNF703"
TCGA.CK.5912	8	36312727	36341136	8	-0.2245	NEUTRAL	NA	0	None
TCGA.EI.6885	8	36341136	38817411	535	-0.3301	NEUTRAL	NA	22	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,WHSC1L1,ZNF703"
TCGA.CK.5912	8	36363156	36762471	72	-0.0258	NEUTRAL	NA	1	KCNU1
TCGA.A6.3807	8	36447400	39521418	607	0.3264	NEUTRAL	NA	27	"ADAM18,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.A6.6140	8	36455931	43679529	1685	-0.0307	NEUTRAL	NA	56	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.AG.3592	8	36455931	135479772	27619	0.2458	NEUTRAL	NA	357	Too-Many
TCGA.AG.3881	8	36549232	37013946	138	0.3006	NEUTRAL	NA	1	KCNU1
TCGA.AZ.4614	8	36556520	36560734	2	-0.223	NEUTRAL	NA	0	None
TCGA.CM.6676	8	36603227	36680740	23	0.293	NEUTRAL	NA	1	KCNU1
TCGA.AA.3941	8	36628404	36942889	93	0.3737	NEUTRAL	NA	1	KCNU1
TCGA.AG.A02X.01A	8	36641892	38808326	205	-0.4136	NEUTRAL	NA	22	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,WHSC1L1,ZNF703"
TCGA.AG.A01N.01A	8	36641892	38832509	211	0.2118	NEUTRAL	NA	23	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,WHSC1L1,ZNF703"
TCGA.AG.4009.01A	8	36644774	36721872	17	-0.0357	NEUTRAL	NA	1	KCNU1
TCGA.A6.2681	8	36662679	37610505	296	0.2251	NEUTRAL	NA	3	"ERLIN2,KCNU1,ZNF703"
TCGA.AA.3685	8	36671372	38388775	376	0.1775	NEUTRAL	NA	20	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,WHSC1L1,ZNF703"
TCGA.AA.A00D.01A	8	36703061	37597824	9	-0.1642	NEUTRAL	NA	3	"ERLIN2,KCNU1,ZNF703"
TCGA.AA.A00F.01A	8	36703061	37706047	42	-0.2672	NEUTRAL	NA	6	"ADGRA2,BRF2,ERLIN2,KCNU1,PROSC,ZNF703"
TCGA.AG.4009.01A	8	36746001	37555623	13	-0.3492	NEUTRAL	NA	2	"KCNU1,ZNF703"
TCGA.EI.6884	8	36748912	146293413	31021	0.1308	NEUTRAL	NA	457	Too-Many
TCGA.AG.3906.01A	8	36776292	38001774	74	0.3541	NEUTRAL	NA	12	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,KCNU1,PROSC,RAB11FIP1,STAR,ZNF703"
TCGA.AA.3509.01A	8	36790386	38883265	216	-0.1526	NEUTRAL	NA	25	"ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.A6.3808.01A	8	36792985	38258374	141	-0.3386	NEUTRAL	NA	18	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,GOT1L1,KCNU1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,WHSC1L1,ZNF703"
TCGA.NH.A6GB	8	36817534	38167648	312	0.0519	NEUTRAL	NA	16	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,GOT1L1,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,WHSC1L1,ZNF703"
TCGA.DM.A285	8	36817534	38378344	341	0.2608	NEUTRAL	NA	19	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,WHSC1L1,ZNF703"
TCGA.AA.3850	8	36858482	43455242	1592	0.18515	NEUTRAL	NA	55	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.NH.A50V	8	36861366	146293413	30899	0.0044	NEUTRAL	NA	456	Too-Many
TCGA.D5.6535	8	36888560	40554993	972	-0.3682	NEUTRAL	NA	31	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4,ZNF703"
TCGA.AG.3584	8	36929371	41746302	1342	0.1014	NEUTRAL	NA	37	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,LETM2,LSM1,NKX6-3,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,SFRP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4,ZNF703"
TCGA.DM.A28H	8	36985918	37035179	26	-0.0133	NEUTRAL	NA	0	None
TCGA.AA.3549	8	36994085	37473069	184	0.0004	NEUTRAL	NA	0	None
TCGA.AG.3881	8	37014096	39758817	506	-0.2942	NEUTRAL	NA	27	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.DM.A28H	8	37038506	37223171	90	0.3755	NEUTRAL	NA	0	None
TCGA.EI.6513	8	37048622	39298835	415	-0.0043	NEUTRAL	NA	25	"ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.CM.6679	8	37112197	146293413	30873	0.14785	NEUTRAL	NA	456	Too-Many
TCGA.F5.6813	8	37155486	40923348	962	0.2361	NEUTRAL	NA	31	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4,ZNF703"
TCGA.G4.6320	8	37162542	146293413	30952	0.0749	NEUTRAL	NA	456	Too-Many
TCGA.CL.4957	8	37217379	146293413	30930	0.0088	NEUTRAL	NA	456	Too-Many
TCGA.DM.A28H	8	37224953	37674864	93	-0.0108	NEUTRAL	NA	4	"ADGRA2,ERLIN2,PROSC,ZNF703"
TCGA.AA.3982	8	37268473	37828953	86	0.1188	NEUTRAL	NA	8	"ADGRA2,ADRB3,BRF2,ERLIN2,GOT1L1,PROSC,RAB11FIP1,ZNF703"
TCGA.CK.5912	8	37309526	37981259	84	0.2956	NEUTRAL	NA	10	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,PROSC,RAB11FIP1,ZNF703"
TCGA.DM.A1D7	8	37329314	146293413	30893	0.0257	NEUTRAL	NA	456	Too-Many
TCGA.AA.3556	8	37340148	74439770	9111	-0.0069	NEUTRAL	NA	146	Too-Many
TCGA.AA.3697	8	37347513	146293413	30862	0.0881	NEUTRAL	NA	456	Too-Many
TCGA.AA.3872	8	37472539	43420831	1355	0.2894	NEUTRAL	NA	55	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.CM.5862	8	37473069	42163513	1210	0.1767	NEUTRAL	NA	41	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,SFRP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4,ZNF703"
TCGA.AA.3870	8	37487075	42455078	1256	0.0375	NEUTRAL	NA	46	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,PPAPDC1B,PROSC,RAB11FIP1,SFRP1,SLC20A2,SMIM19,STAR,TACC1,TM2D2,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.NH.A6GA	8	37521657	43334725	1334	0.0225	NEUTRAL	NA	55	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.AA.A02K.01A	8	37553472	37972372	65	0.3707	NEUTRAL	NA	10	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,PROSC,RAB11FIP1,ZNF703"
TCGA.AG.A00C.01A	8	37555623	37756562	41	0.2813	NEUTRAL	NA	6	"ADGRA2,BRF2,ERLIN2,PROSC,RAB11FIP1,ZNF703"
TCGA.CK.5914.01A	8	37555623	38832509	191	-0.3337	NEUTRAL	NA	22	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,WHSC1L1,ZNF703"
TCGA.F4.6463	8	37590445	38110214	39	-0.0176	NEUTRAL	NA	13	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,GOT1L1,LSM1,PROSC,RAB11FIP1,STAR"
TCGA.AA.A00D.01A	8	37599213	37635459	14	0.3743	NEUTRAL	NA	2	"ERLIN2,PROSC"
TCGA.AA.A02J.01A	8	37599213	42407620	435	-0.0379	NEUTRAL	NA	45	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,PPAPDC1B,PROSC,RAB11FIP1,SFRP1,SLC20A2,SMIM19,STAR,TACC1,TM2D2,VDAC3,WHSC1L1,ZMAT4"
TCGA.AA.A010.01A	8	37623759	37821650	42	-0.4627	NEUTRAL	NA	6	"ADGRA2,ADRB3,BRF2,GOT1L1,PROSC,RAB11FIP1"
TCGA.AG.4009.01A	8	37630224	37795107	34	-0.0595	NEUTRAL	NA	5	"ADGRA2,BRF2,GOT1L1,PROSC,RAB11FIP1"
TCGA.DC.6155	8	37645465	38826767	181	-0.4609	NEUTRAL	NA	18	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,FGFR1,GOT1L1,LETM2,LSM1,PLEKHA2,PPAPDC1B,RAB11FIP1,STAR,TACC1,WHSC1L1"
TCGA.A6.5662	8	37651476	38657694	148	0.0474	NEUTRAL	NA	17	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,FGFR1,GOT1L1,LETM2,LSM1,PPAPDC1B,RAB11FIP1,STAR,TACC1,WHSC1L1"
TCGA.AA.A01Q.01A	8	37672352	37706047	19	-0.5048	NEUTRAL	NA	2	"ADGRA2,BRF2"
TCGA.AA.A00D.01A	8	37672352	37963017	30	-0.1201	NEUTRAL	NA	7	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,GOT1L1,RAB11FIP1"
TCGA.AG.3909.01A	8	37672352	38067504	66	-0.4767	NEUTRAL	NA	10	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,EIF4EBP1,GOT1L1,LSM1,RAB11FIP1,STAR"
TCGA.A6.5660	8	37674864	43778913	1343	-0.0555	NEUTRAL	NA	52	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4"
TCGA.AA.A01Q.01A	8	37707111	38832509	109	0.1262	NEUTRAL	NA	18	"ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,FGFR1,GOT1L1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,RAB11FIP1,STAR,TACC1,WHSC1L1"
TCGA.CA.6719	8	37718893	41507236	1002	-0.0614	NEUTRAL	NA	31	"ADAM18,ADAM2,ADAM32,ADAM9,ADRB3,AGPAT6,ASH2L,BAG4,C8orf4,C8orf86,DDHD2,EIF4EBP1,FGFR1,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,LETM2,LSM1,NKX6-3,PLEKHA2,PPAPDC1B,RAB11FIP1,SFRP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.AG.3896	8	37738615	37758537	3	-0.2163	NEUTRAL	NA	1	RAB11FIP1
TCGA.AG.4009.01A	8	37796177	37974119	14	0.3521	NEUTRAL	NA	4	"ADRB3,ASH2L,EIF4EBP1,GOT1L1"
TCGA.A6.2681	8	37800511	48814586	1529	0.1724	NEUTRAL	NA	51	"ADAM18,ADAM2,ADAM32,ADAM9,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,C8orf4,C8orf86,CEBPD,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,FGFR1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SPIDR,STAR,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4"
TCGA.AA.3952	8	37800511	146293413	30798	0.0199	NEUTRAL	NA	449	Too-Many
TCGA.AG.A00C.01A	8	37822772	37963832	5	0.0818	NEUTRAL	NA	3	"ADRB3,ASH2L,EIF4EBP1"
TCGA.DM.A28H	8	37828953	38133792	25	-0.02	NEUTRAL	NA	8	"ASH2L,BAG4,DDHD2,EIF4EBP1,LSM1,PPAPDC1B,STAR,WHSC1L1"
TCGA.A6.5659	8	37834311	146293413	28211	0.0704	NEUTRAL	NA	448	Too-Many
TCGA.AG.A008.01A	8	37914550	37963017	3	-0.4565	NEUTRAL	NA	2	"ASH2L,EIF4EBP1"
TCGA.AA.A00F.01A	8	37963832	37974119	7	-0.0905	NEUTRAL	NA	1	ASH2L
TCGA.AA.A00D.01A	8	37963832	37993136	13	0.2269	NEUTRAL	NA	1	ASH2L
TCGA.AG.A008.01A	8	37963832	68189476	1142	0.1278	NEUTRAL	NA	117	Too-Many
TCGA.AA.3679	8	37971941	40880406	816	0.0029	NEUTRAL	NA	22	"ADAM18,ADAM2,ADAM32,ADAM9,ASH2L,BAG4,C8orf4,C8orf86,DDHD2,FGFR1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.AG.A00C.01A	8	37978460	38001774	7	0.1845	NEUTRAL	NA	2	"ASH2L,STAR"
TCGA.CM.4752	8	37980586	38379249	54	-0.023	NEUTRAL	NA	10	"ASH2L,BAG4,C8orf86,DDHD2,FGFR1,LETM2,LSM1,PPAPDC1B,STAR,WHSC1L1"
TCGA.AA.3529	8	37980586	38530476	103	0.2981	NEUTRAL	NA	10	"ASH2L,BAG4,C8orf86,DDHD2,FGFR1,LETM2,LSM1,PPAPDC1B,STAR,WHSC1L1"
TCGA.AA.3939.01A	8	37985768	98701207	2087	0.2846	NEUTRAL	NA	226	Too-Many
TCGA.AA.A00D.01A	8	37996263	38021157	8	-0.4649	NEUTRAL	NA	3	"ASH2L,LSM1,STAR"
TCGA.AG.3732	8	37996326	38706396	134	0.0053	NEUTRAL	NA	11	"ASH2L,BAG4,C8orf86,DDHD2,FGFR1,LETM2,LSM1,PPAPDC1B,STAR,TACC1,WHSC1L1"
TCGA.AG.A00C.01A	8	38002688	38008208	5	-0.2608	NEUTRAL	NA	1	STAR
TCGA.AG.3906.01A	8	38002688	41397158	245	0.02	NEUTRAL	NA	24	"ADAM18,ADAM2,ADAM32,ADAM9,BAG4,C8orf4,C8orf86,DDHD2,FGFR1,GINS4,GOLGA7,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,SFRP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.AG.A02G.01A	8	38006122	42196462	349	-0.2186	NEUTRAL	NA	32	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,BAG4,C8orf4,C8orf86,DDHD2,FGFR1,GINS4,GOLGA7,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,PPAPDC1B,SFRP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.AA.A00F.01A	8	38021157	38832509	66	-0.2731	NEUTRAL	NA	11	"BAG4,C8orf86,DDHD2,FGFR1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,TACC1,WHSC1L1"
TCGA.AA.A00D.01A	8	38027272	38173383	24	0.2396	NEUTRAL	NA	5	"BAG4,DDHD2,LSM1,PPAPDC1B,WHSC1L1"
TCGA.A6.5667	8	38028194	47115068	1332	0.3027	NEUTRAL	NA	44	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,BAG4,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,FGFR1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,RNF170,SFRP1,SLC20A2,SMIM19,TACC1,THAP1,TM2D2,VDAC3,WHSC1L1,ZMAT4"
TCGA.AG.3891.01A	8	38033718	42317362	382	0.2691	NEUTRAL	NA	34	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,BAG4,C8orf4,C8orf86,DDHD2,DKK4,FGFR1,GINS4,GOLGA7,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,PPAPDC1B,SFRP1,SLC20A2,TACC1,TM2D2,VDAC3,WHSC1L1,ZMAT4"
TCGA.AG.4009.01A	8	38090501	38125380	20	-0.1014	NEUTRAL	NA	2	"DDHD2,PPAPDC1B"
TCGA.AA.3982	8	38105996	39002752	175	0.1641	NEUTRAL	NA	12	"ADAM32,ADAM9,C8orf86,DDHD2,FGFR1,HTRA4,LETM2,PLEKHA2,PPAPDC1B,TACC1,TM2D2,WHSC1L1"
TCGA.AA.A01I.01A	8	38111055	146279416	3733	-0.0971	NEUTRAL	NA	443	Too-Many
TCGA.F4.6463	8	38112805	40208090	511	-0.4498	NEUTRAL	NA	17	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,C8orf86,DDHD2,FGFR1,HTRA4,IDO1,IDO2,LETM2,PLEKHA2,PPAPDC1B,TACC1,TM2D2,WHSC1L1"
TCGA.AA.A010.01A	8	38123611	41844922	296	0.1867	NEUTRAL	NA	24	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,C8orf4,C8orf86,FGFR1,GINS4,GOLGA7,HTRA4,IDO1,IDO2,KAT6A,LETM2,NKX6-3,PLEKHA2,PPAPDC1B,SFRP1,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.AG.A023.01A	8	38135782	38852820	87	-0.0201	NEUTRAL	NA	8	"C8orf86,FGFR1,HTRA4,LETM2,PLEKHA2,TACC1,TM2D2,WHSC1L1"
TCGA.AG.A00C.01A	8	38147975	38810751	68	-0.013	NEUTRAL	NA	6	"C8orf86,FGFR1,LETM2,PLEKHA2,TACC1,WHSC1L1"
TCGA.AA.A00N.01A	8	38153276	38205348	17	0.3216	NEUTRAL	NA	1	WHSC1L1
TCGA.AG.3909.01A	8	38172113	38265672	21	-0.0876	NEUTRAL	NA	2	"LETM2,WHSC1L1"
TCGA.AA.A00D.01A	8	38175414	38205348	10	-0.3523	NEUTRAL	NA	1	WHSC1L1
TCGA.AA.A00D.01A	8	38250117	38961085	64	0.0627	NEUTRAL	NA	8	"ADAM9,C8orf86,FGFR1,HTRA4,LETM2,PLEKHA2,TACC1,TM2D2"
TCGA.A6.3808.01A	8	38259992	38853720	64	0.1236	NEUTRAL	NA	7	"C8orf86,FGFR1,HTRA4,LETM2,PLEKHA2,TACC1,TM2D2"
TCGA.AA.A00N.01A	8	38271099	38810137	42	0.3559	NEUTRAL	NA	4	"C8orf86,FGFR1,PLEKHA2,TACC1"
TCGA.AA.A01D.01A	8	38271099	39777530	143	0.0283	NEUTRAL	NA	11	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf86,FGFR1,HTRA4,IDO1,PLEKHA2,TACC1,TM2D2"
TCGA.AM.5820	8	38286224	140507163	29442	-0.0055	NEUTRAL	NA	343	Too-Many
TCGA.CM.6170	8	38332317	108879220	18181	0.0278	NEUTRAL	NA	260	Too-Many
TCGA.AA.3860	8	38346583	39799192	269	0.0679	NEUTRAL	NA	11	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf86,HTRA4,IDO1,IDO2,PLEKHA2,TACC1,TM2D2"
TCGA.AA.A00Q.01A	8	38369863	38873575	37	0.1525	NEUTRAL	NA	6	"ADAM9,C8orf86,HTRA4,PLEKHA2,TACC1,TM2D2"
TCGA.AD.6888	8	38385388	38418436	11	-0.3458	NEUTRAL	NA	1	C8orf86
TCGA.CM.6168	8	38388011	38449791	23	-0.3576	NEUTRAL	NA	0	None
TCGA.CM.4752	8	38388011	40347078	558	0.0273	NEUTRAL	NA	11	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,HTRA4,IDO1,IDO2,PLEKHA2,TACC1,TM2D2"
TCGA.D5.6926	8	38418436	39577962	203	-0.4886	NEUTRAL	NA	7	"ADAM18,ADAM32,ADAM9,HTRA4,PLEKHA2,TACC1,TM2D2"
TCGA.A6.6653	8	38434365	95578348	14119	0.0027	NEUTRAL	NA	200	Too-Many
TCGA.CM.6168	8	38450130	146293413	30729	0.2387	NEUTRAL	NA	437	Too-Many
TCGA.CI.6623	8	38468680	50175974	1725	0.2031	NEUTRAL	NA	44	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,C8orf22,C8orf4,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,MCM4,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SNAI2,SPIDR,TACC1,THAP1,TM2D2,UBE2V2,VDAC3,ZMAT4"
TCGA.NH.A6GB	8	38469302	38804628	76	0.0904	NEUTRAL	NA	2	"PLEKHA2,TACC1"
TCGA.CM.6676	8	38548618	41391132	853	-0.2832	NEUTRAL	NA	15	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,GINS4,GOLGA7,HTRA4,IDO1,IDO2,PLEKHA2,SFRP1,TACC1,TM2D2,ZMAT4"
TCGA.AF.3911	8	38686367	41887473	986	-0.0085	NEUTRAL	NA	19	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,C8orf4,GINS4,GOLGA7,HTRA4,IDO1,IDO2,KAT6A,NKX6-3,PLEKHA2,SFRP1,TACC1,TM2D2,ZMAT4"
TCGA.F5.6811.01A	8	38764211	146250220	4152	0.0989	NEUTRAL	NA	435	Too-Many
TCGA.G5.6235	8	38767783	142584956	30049	0.3009	NEUTRAL	NA	350	Too-Many
TCGA.AG.4009.01A	8	38775399	38814831	9	0.0921	NEUTRAL	NA	1	PLEKHA2
TCGA.AA.3681	8	38781039	39408585	82	-0.4803	NEUTRAL	NA	5	"ADAM32,ADAM9,HTRA4,PLEKHA2,TM2D2"
TCGA.DY.A1DG	8	38799056	146293413	30656	-0.0762	NEUTRAL	NA	436	Too-Many
TCGA.AG.3909.01A	8	38810751	38831731	5	-0.316	NEUTRAL	NA	2	"HTRA4,PLEKHA2"
TCGA.AG.A02X.01A	8	38814831	38852820	15	-0.2588	NEUTRAL	NA	3	"HTRA4,PLEKHA2,TM2D2"
TCGA.AG.A00C.01A	8	38814831	38865355	17	0.3532	NEUTRAL	NA	4	"ADAM9,HTRA4,PLEKHA2,TM2D2"
TCGA.CM.6166	8	38821664	39081820	43	0.0407	NEUTRAL	NA	5	"ADAM32,ADAM9,HTRA4,PLEKHA2,TM2D2"
TCGA.DC.6155	8	38826791	39298835	63	-0.1398	NEUTRAL	NA	5	"ADAM32,ADAM9,HTRA4,PLEKHA2,TM2D2"
TCGA.AA.A02K.01A	8	38826932	38869118	17	-0.4323	NEUTRAL	NA	4	"ADAM9,HTRA4,PLEKHA2,TM2D2"
TCGA.AA.A00F.01A	8	38834066	38879096	19	0.2928	NEUTRAL	NA	3	"ADAM9,HTRA4,TM2D2"
TCGA.AA.A01Q.01A	8	38848801	40683047	74	0.04	NEUTRAL	NA	9	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,IDO1,IDO2,TM2D2,ZMAT4"
TCGA.AG.A02X.01A	8	38853720	39027419	29	0.3482	NEUTRAL	NA	3	"ADAM32,ADAM9,TM2D2"
TCGA.AG.4009.01A	8	38865355	39806638	93	-0.0886	NEUTRAL	NA	6	"ADAM18,ADAM2,ADAM32,ADAM9,IDO1,IDO2"
TCGA.AG.A01N.01A	8	38865355	49647584	455	0.2251	NEUTRAL	NA	38	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,C8orf4,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,MCM4,NKX6-3,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SPIDR,THAP1,UBE2V2,VDAC3,ZMAT4"
TCGA.AG.A00C.01A	8	38869150	39068613	31	0.0793	NEUTRAL	NA	2	"ADAM32,ADAM9"
TCGA.AG.3909.01A	8	38869150	39695578	82	0.1605	NEUTRAL	NA	4	"ADAM18,ADAM2,ADAM32,ADAM9"
TCGA.AA.A00N.01A	8	38876325	39018350	23	0.1084	NEUTRAL	NA	2	"ADAM32,ADAM9"
TCGA.AA.A00F.01A	8	38880653	41348337	66	-0.1774	NEUTRAL	NA	10	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,GOLGA7,IDO1,IDO2,SFRP1,ZMAT4"
TCGA.AA.3509.01A	8	38884155	39463766	38	0.3553	NEUTRAL	NA	3	"ADAM18,ADAM32,ADAM9"
TCGA.CK.5914.01A	8	38899426	40683047	102	0.0649	NEUTRAL	NA	8	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,IDO1,IDO2,ZMAT4"
TCGA.AA.3666	8	38917848	85032003	11587	-0.455	NEUTRAL	NA	154	Too-Many
TCGA.AA.3811	8	38952994	39717652	115	-0.0015	NEUTRAL	NA	4	"ADAM18,ADAM2,ADAM32,ADAM9"
TCGA.AA.A00Q.01A	8	38961085	41517901	76	0.1454	NEUTRAL	NA	14	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,C8orf4,GINS4,GOLGA7,IDO1,IDO2,NKX6-3,SFRP1,ZMAT4"
TCGA.AG.A01W.01A	8	38967959	39814736	98	0.1691	NEUTRAL	NA	5	"ADAM18,ADAM2,ADAM32,IDO1,IDO2"
TCGA.AA.3685	8	38982994	39991572	232	0.2695	NEUTRAL	NA	5	"ADAM18,ADAM2,ADAM32,IDO1,IDO2"
TCGA.AA.3941	8	39008679	39298835	35	0.3678	NEUTRAL	NA	1	ADAM32
TCGA.AA.3982	8	39008679	39573524	72	-0.4436	NEUTRAL	NA	2	"ADAM18,ADAM32"
TCGA.AG.A00C.01A	8	39079075	39840142	65	-0.2645	NEUTRAL	NA	5	"ADAM18,ADAM2,ADAM32,IDO1,IDO2"
TCGA.AD.6888	8	39088048	39948960	188	0.0287	NEUTRAL	NA	5	"ADAM18,ADAM2,ADAM32,IDO1,IDO2"
TCGA.A6.3808.01A	8	39128323	42251677	212	0.3174	NEUTRAL	NA	20	"ADAM18,ADAM2,ADAM32,AGPAT6,ANK1,AP3M2,C8orf4,DKK4,GINS4,GOLGA7,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,SFRP1,VDAC3,ZMAT4"
TCGA.AG.A02X.01A	8	39128323	48626004	314	0.1412	NEUTRAL	NA	32	"ADAM18,ADAM2,ADAM32,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,SPIDR,THAP1,VDAC3,ZMAT4"
TCGA.G4.6303	8	39131689	43778913	1122	-0.2418	NEUTRAL	NA	31	"ADAM18,ADAM2,ADAM32,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.D5.6541	8	39173899	40651569	521	0.0784	NEUTRAL	NA	6	"ADAM18,ADAM2,C8orf4,IDO1,IDO2,ZMAT4"
TCGA.AA.3869	8	39207353	40717348	542	0.0339	NEUTRAL	NA	6	"ADAM18,ADAM2,C8orf4,IDO1,IDO2,ZMAT4"
TCGA.A6.2677	8	39288761	43778913	1020	0.0806	NEUTRAL	NA	30	"ADAM18,ADAM2,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AZ.5403	8	39298835	40673463	514	0.2366	NEUTRAL	NA	6	"ADAM18,ADAM2,C8orf4,IDO1,IDO2,ZMAT4"
TCGA.AF.2693	8	39397014	39399230	4	-0.1073	NEUTRAL	NA	0	None
TCGA.AA.3941	8	39403893	39573067	32	0.2279	NEUTRAL	NA	1	ADAM18
TCGA.AA.3681	8	39429070	46924356	1100	0.3672	NEUTRAL	NA	30	"ADAM18,ADAM2,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AG.A023.01A	8	39442069	39679072	35	-0.2073	NEUTRAL	NA	2	"ADAM18,ADAM2"
TCGA.AA.A00D.01A	8	39442069	40625116	48	-0.3312	NEUTRAL	NA	6	"ADAM18,ADAM2,C8orf4,IDO1,IDO2,ZMAT4"
TCGA.AA.A02K.01A	8	39486826	41641592	135	-0.3047	NEUTRAL	NA	12	"ADAM18,ADAM2,AGPAT6,ANK1,C8orf4,GINS4,GOLGA7,IDO1,IDO2,NKX6-3,SFRP1,ZMAT4"
TCGA.A6.3807	8	39522612	40675730	488	-0.1128	NEUTRAL	NA	6	"ADAM18,ADAM2,C8orf4,IDO1,IDO2,ZMAT4"
TCGA.EI.6513	8	39543457	43075537	1021	-0.0209	NEUTRAL	NA	29	"ADAM18,ADAM2,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AZ.6607	8	39544223	39555707	3	-0.3346	NEUTRAL	NA	1	ADAM18
TCGA.AA.3488	8	39577302	43657036	1061	-0.45	NEUTRAL	NA	30	"ADAM18,ADAM2,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.CM.6166	8	39584167	40281396	303	0.0474	NEUTRAL	NA	5	"ADAM18,ADAM2,C8orf4,IDO1,IDO2"
TCGA.AA.3982	8	39584167	40596423	458	-0.0603	NEUTRAL	NA	6	"ADAM18,ADAM2,C8orf4,IDO1,IDO2,ZMAT4"
TCGA.DY.A1DC	8	39584167	43420831	1049	0.3726	NEUTRAL	NA	30	"ADAM18,ADAM2,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AF.3913	8	39585568	41702355	813	-0.0525	NEUTRAL	NA	12	"ADAM18,ADAM2,AGPAT6,ANK1,C8orf4,GINS4,GOLGA7,IDO1,IDO2,NKX6-3,SFRP1,ZMAT4"
TCGA.AA.3509.01A	8	39587337	39872768	38	0.0234	NEUTRAL	NA	4	"ADAM18,ADAM2,IDO1,IDO2"
TCGA.AG.A016.01A	8	39613220	59872438	642	0.3275	NEUTRAL	NA	69	"ADAM2,AGPAT6,ANK1,AP3M2,ATP6V1H,C8orf22,C8orf4,CEBPD,CHCHD7,CHRNA6,CHRNB3,CYP7A1,DKK4,EFCAB1,FAM110B,FAM150A,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,IMPAD1,KAT6A,LYN,LYPLA1,MCM4,MOS,MRPL15,NKX6-3,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PLAT,POLB,POMK,POTEA,PRKDC,PXDNL,RB1CC1,RGS20,RNF170,RP1,RPS20,SDCBP,SDR16C5,SFRP1,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,THAP1,TMEM68,TOX,UBE2V2,UBXN2B,VDAC3,XKR4,ZMAT4"
TCGA.DM.A28M.01A	8	39666861	68137101	954	-0.1306	NEUTRAL	NA	100	"ADAM2,ADHFE1,AGPAT6,ANK1,AP3M2,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf4,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,COPS5,CRH,CSPP1,CYP7A1,CYP7B1,DKK4,DNAJC5B,EFCAB1,FAM110B,FAM150A,FNTA,GGH,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,IMPAD1,KAT6A,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NKX6-3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PLAT,POLB,POMK,POTEA,PPP1R42,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,RRS1,SDCBP,SDR16C5,SFRP1,SGK3,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TCF24,TGS1,THAP1,TMEM68,TOX,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,VDAC3,XKR4,YTHDF3,ZMAT4"
TCGA.DM.A282.01A	8	39666861	82670325	1364	-0.013	NEUTRAL	NA	150	Too-Many
TCGA.AZ.4684.01A	8	39682281	42251677	175	-0.2082	NEUTRAL	NA	18	"ADAM2,AGPAT6,ANK1,AP3M2,C8orf4,DKK4,GINS4,GOLGA7,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,SFRP1,VDAC3,ZMAT4"
TCGA.AG.3881	8	39769374	42451525	922	0.308	NEUTRAL	NA	19	"AGPAT6,ANK1,AP3M2,C8orf4,DKK4,GINS4,GOLGA7,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,SFRP1,SLC20A2,SMIM19,VDAC3,ZMAT4"
TCGA.AZ.4614	8	39821036	48454710	1161	0.008	NEUTRAL	NA	28	"AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,SPIDR,THAP1,VDAC3,ZMAT4"
TCGA.CM.5344	8	39823238	146293413	30482	0.0524	NEUTRAL	NA	428	Too-Many
TCGA.AA.A01T	8	39834818	40176726	175	-0.2546	NEUTRAL	NA	2	"C8orf4,IDO2"
TCGA.AG.A00Y.01A	8	39842978	41122700	14	0.3335	NEUTRAL	NA	4	"C8orf4,IDO2,SFRP1,ZMAT4"
TCGA.AG.A00C.01A	8	39842978	49986565	367	0.1353	NEUTRAL	NA	35	"AGPAT6,ANK1,AP3M2,C8orf22,C8orf4,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO2,IKBKB,KAT6A,MCM4,NKX6-3,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SNAI2,SPIDR,THAP1,UBE2V2,VDAC3,ZMAT4"
TCGA.AG.4009.01A	8	39862772	41394649	19	-0.0435	NEUTRAL	NA	6	"C8orf4,GINS4,GOLGA7,IDO2,SFRP1,ZMAT4"
TCGA.DC.6682	8	39869007	90206308	12506	0.2508	NEUTRAL	NA	167	Too-Many
TCGA.AG.3883	8	39873303	41318438	595	-0.3306	NEUTRAL	NA	4	"C8orf4,IDO2,SFRP1,ZMAT4"
TCGA.AG.A01W.01A	8	39890553	41760749	102	-0.17	NEUTRAL	NA	8	"AGPAT6,ANK1,C8orf4,GINS4,GOLGA7,NKX6-3,SFRP1,ZMAT4"
TCGA.AF.2693	8	39955251	40020798	35	0.1917	NEUTRAL	NA	1	C8orf4
TCGA.AA.3811	8	39976969	40683337	332	0.0627	NEUTRAL	NA	2	"C8orf4,ZMAT4"
TCGA.A6.A567	8	40003789	40059649	27	0.1422	NEUTRAL	NA	1	C8orf4
TCGA.AF.2693	8	40034286	40085155	39	0.2551	NEUTRAL	NA	0	None
TCGA.AF.2693	8	40091712	40107560	9	-0.1967	NEUTRAL	NA	0	None
TCGA.AF.2693	8	40110258	85838264	11452	0.0011	NEUTRAL	NA	148	Too-Many
TCGA.AG.3727	8	40138298	112933982	18667	0	NEUTRAL	NA	259	Too-Many
TCGA.AA.3941	8	40167695	40178230	7	-0.456	NEUTRAL	NA	0	None
TCGA.EI.6885	8	40171899	40185676	17	-0.1108	NEUTRAL	NA	0	None
TCGA.AA.A01T	8	40177828	146293413	30283	0.0691	NEUTRAL	NA	426	Too-Many
TCGA.NH.A6GB	8	40181612	41751707	583	0.3574	NEUTRAL	NA	7	"AGPAT6,ANK1,GINS4,GOLGA7,NKX6-3,SFRP1,ZMAT4"
TCGA.EI.6885	8	40186929	40299028	57	-0.4417	NEUTRAL	NA	0	None
TCGA.D5.6533	8	40192909	40833986	280	0.1298	NEUTRAL	NA	1	ZMAT4
TCGA.AG.A026	8	40204543	40766190	258	0.3483	NEUTRAL	NA	1	ZMAT4
TCGA.F4.6463	8	40210878	41314842	414	-0.041	NEUTRAL	NA	2	"SFRP1,ZMAT4"
TCGA.AG.3893	8	40237468	40238136	4	-0.3184	NEUTRAL	NA	0	None
TCGA.NH.A8F8	8	40264412	40636041	167	0.3737	NEUTRAL	NA	1	ZMAT4
TCGA.EI.6885	8	40310766	40861305	235	-0.0997	NEUTRAL	NA	1	ZMAT4
TCGA.CM.6166	8	40342991	42727451	649	-0.005	NEUTRAL	NA	20	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,GINS4,GOLGA7,IKBKB,KAT6A,NKX6-3,PLAT,POLB,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.CM.4752	8	40347974	40501167	73	-0.3058	NEUTRAL	NA	1	ZMAT4
TCGA.AD.6888	8	40387790	41041748	230	-0.0289	NEUTRAL	NA	1	ZMAT4
TCGA.EI.6506	8	40400864	146293413	30113	-0.0053	NEUTRAL	NA	426	Too-Many
TCGA.G4.6626	8	40440778	90181367	12205	0.1992	NEUTRAL	NA	165	Too-Many
TCGA.CM.4752	8	40511935	41969929	439	-0.0463	NEUTRAL	NA	8	"AGPAT6,ANK1,GINS4,GOLGA7,KAT6A,NKX6-3,SFRP1,ZMAT4"
TCGA.AA.3941	8	40512127	40623757	41	0.2504	NEUTRAL	NA	1	ZMAT4
TCGA.AA.3930.01A	8	40554737	98787916	1850	0.3201	NEUTRAL	NA	206	Too-Many
TCGA.D5.6535	8	40557678	41011939	142	-0.0222	NEUTRAL	NA	1	ZMAT4
TCGA.AG.3893	8	40591745	74343931	8228	-0.0024	NEUTRAL	NA	116	Too-Many
TCGA.AA.3982	8	40614508	47799942	698	0.2186	NEUTRAL	NA	25	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AA.3662	8	40636978	43663674	594	-0.0166	NEUTRAL	NA	25	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.NH.A8F8	8	40636978	70571621	7003	-0.0081	NEUTRAL	NA	100	"ADHFE1,AGPAT6,ANK1,AP3M2,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DKK4,DNAJC5B,EFCAB1,FAM110B,FAM150A,FNTA,GGH,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,IMPAD1,KAT6A,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NKX6-3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PLAT,POLB,POMK,POTEA,PPP1R42,PREX2,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,RRS1,SDCBP,SDR16C5,SFRP1,SGK3,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,SULF1,TCEA1,TCF24,TGS1,THAP1,TMEM68,TOX,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,VDAC3,XKR4,YTHDF3,ZMAT4"
TCGA.AA.3560	8	40673945	40675730	4	-0.2163	NEUTRAL	NA	1	ZMAT4
TCGA.CM.5868	8	40675730	43662755	582	-0.342	NEUTRAL	NA	25	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.A6.3807	8	40676436	49244022	822	0.2765	NEUTRAL	NA	30	"AGPAT6,ANK1,AP3M2,CEBPD,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,MCM4,NKX6-3,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SPIDR,THAP1,UBE2V2,VDAC3,ZMAT4"
TCGA.AG.3909.01A	8	40683047	41348337	5	0.0851	NEUTRAL	NA	3	"GOLGA7,SFRP1,ZMAT4"
TCGA.CK.4948.01B	8	40683047	65509192	754	0.0262	NEUTRAL	NA	76	"AGPAT6,ANK1,AP3M2,ASPH,ATP6V1H,BHLHE22,C8orf22,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,CYP7A1,CYP7B1,DKK4,EFCAB1,FAM110B,FAM150A,FNTA,GGH,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,IMPAD1,KAT6A,LYN,LYPLA1,MCM4,MOS,MRPL15,NKAIN3,NKX6-3,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PLAT,POLB,POMK,POTEA,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,SDCBP,SDR16C5,SFRP1,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,THAP1,TMEM68,TOX,TTPA,UBE2V2,UBXN2B,VDAC3,XKR4,YTHDF3,ZMAT4"
TCGA.A6.2680	8	40688487	50659323	1156	0.1479	NEUTRAL	NA	33	"AGPAT6,ANK1,AP3M2,C8orf22,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,MCM4,NKX6-3,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SNAI2,SPIDR,THAP1,UBE2V2,VDAC3,ZMAT4"
TCGA.G4.6299	8	40701173	40789255	31	-0.236	NEUTRAL	NA	1	ZMAT4
TCGA.AA.3869	8	40717737	42834598	502	0.3319	NEUTRAL	NA	21	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,GINS4,GOLGA7,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AZ.4308	8	40762262	48791595	733	0.0103	NEUTRAL	NA	27	"AGPAT6,ANK1,AP3M2,CEBPD,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SPIDR,THAP1,VDAC3"
TCGA.A6.A56B	8	40801540	119973563	20299	0.0098	NEUTRAL	NA	269	Too-Many
TCGA.D5.6533	8	40880406	146293413	29870	0.1109	NEUTRAL	NA	425	Too-Many
TCGA.D5.6929	8	40881328	146293413	29931	0.3286	NEUTRAL	NA	425	Too-Many
TCGA.F5.6813	8	40933985	43778913	509	-0.0446	NEUTRAL	NA	24	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AA.3549	8	40949653	146293413	29998	0.0103	NEUTRAL	NA	425	Too-Many
TCGA.AZ.6605	8	40965148	118702036	19761	0.2823	NEUTRAL	NA	266	Too-Many
TCGA.D5.6535	8	41019094	41509258	139	0.2213	NEUTRAL	NA	5	"AGPAT6,GINS4,GOLGA7,NKX6-3,SFRP1"
TCGA.AA.3971	8	41026075	146293413	29937	0.3403	NEUTRAL	NA	425	Too-Many
TCGA.DM.A28G	8	41030424	49053164	686	0.102	NEUTRAL	NA	29	"AGPAT6,ANK1,AP3M2,CEBPD,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,MCM4,NKX6-3,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SPIDR,THAP1,UBE2V2,VDAC3"
TCGA.AD.6888	8	41041816	41165740	38	0.3729	NEUTRAL	NA	1	SFRP1
TCGA.F4.6805	8	41054266	41059456	2	0.1188	NEUTRAL	NA	0	None
TCGA.AD.6888	8	41165793	42001905	232	-0.0404	NEUTRAL	NA	7	"AGPAT6,ANK1,GINS4,GOLGA7,KAT6A,NKX6-3,SFRP1"
TCGA.AA.3685	8	41170481	146293413	29928	0.1735	NEUTRAL	NA	424	Too-Many
TCGA.DC.6155	8	41248948	41481095	69	-0.2272	NEUTRAL	NA	3	"AGPAT6,GINS4,GOLGA7"
TCGA.5M.AAT5	8	41248948	99046984	14519	0.192	NEUTRAL	NA	205	Too-Many
TCGA.A6.2674	8	41258248	146293413	29882	0.2069	NEUTRAL	NA	424	Too-Many
TCGA.AG.A020	8	41314842	146293413	29832	0.0663	NEUTRAL	NA	424	Too-Many
TCGA.F4.6463	8	41315285	146293413	29867	0.3083	NEUTRAL	NA	424	Too-Many
TCGA.AG.3883	8	41318670	41328521	4	0.0458	NEUTRAL	NA	0	None
TCGA.AG.4015	8	41322335	57512963	3049	0.2895	NEUTRAL	NA	56	"AGPAT6,ANK1,AP3M2,ATP6V1H,C8orf22,CEBPD,CHCHD7,CHRNA6,CHRNB3,DKK4,EFCAB1,FAM150A,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,LYN,LYPLA1,MCM4,MOS,MRPL15,NKX6-3,NPBWR1,OPRK1,PCMTD1,PENK,PLAG1,PLAT,POLB,POMK,POTEA,PRKDC,PXDNL,RB1CC1,RGS20,RNF170,RP1,RPS20,SDR16C5,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,THAP1,TMEM68,UBE2V2,VDAC3,XKR4"
TCGA.NH.A50U	8	41322335	93426471	12656	0.2954	NEUTRAL	NA	176	Too-Many
TCGA.AA.A00F.01A	8	41355001	49833684	238	0.117	NEUTRAL	NA	30	"AGPAT6,ANK1,AP3M2,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,MCM4,NKX6-3,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SLC20A2,SMIM19,SNAI2,SPIDR,THAP1,UBE2V2,VDAC3"
TCGA.CM.6676	8	41391587	41879960	154	0.3336	NEUTRAL	NA	5	"AGPAT6,ANK1,GINS4,KAT6A,NKX6-3"
TCGA.DM.A28H	8	41418162	41524807	33	-0.0192	NEUTRAL	NA	3	"AGPAT6,ANK1,NKX6-3"
TCGA.AG.A023.01A	8	41456640	49986565	332	0.0872	NEUTRAL	NA	29	"AGPAT6,ANK1,AP3M2,C8orf22,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,HGSNAT,HOOK3,IKBKB,KAT6A,MCM4,NKX6-3,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SLC20A2,SMIM19,SNAI2,SPIDR,THAP1,UBE2V2,VDAC3"
TCGA.DC.6155	8	41487884	43778913	344	0.2941	NEUTRAL	NA	20	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AG.3906.01A	8	41504671	42320464	130	-0.0687	NEUTRAL	NA	10	"ANK1,AP3M2,DKK4,IKBKB,KAT6A,NKX6-3,PLAT,POLB,SLC20A2,VDAC3"
TCGA.D5.6535	8	41516580	42306812	210	-0.4154	NEUTRAL	NA	9	"ANK1,AP3M2,DKK4,IKBKB,KAT6A,PLAT,POLB,SLC20A2,VDAC3"
TCGA.AG.4009.01A	8	41518933	41583240	34	0.2019	NEUTRAL	NA	1	ANK1
TCGA.AA.A00Q.01A	8	41518933	41798432	44	-0.2532	NEUTRAL	NA	2	"ANK1,KAT6A"
TCGA.DM.A28H	8	41531073	41631929	53	0.3149	NEUTRAL	NA	1	ANK1
TCGA.D5.5540	8	41554747	42116391	157	-0.0936	NEUTRAL	NA	4	"ANK1,AP3M2,KAT6A,PLAT"
TCGA.AA.A00O.01A	8	41577160	134239655	3040	0.0578	NEUTRAL	NA	318	Too-Many
TCGA.AG.4009.01A	8	41584716	42039407	34	-0.2008	NEUTRAL	NA	4	"ANK1,AP3M2,KAT6A,PLAT"
TCGA.D5.6534	8	41614376	146293413	29688	0.099	NEUTRAL	NA	420	Too-Many
TCGA.DM.A28H	8	41632229	43778913	276	0.0124	NEUTRAL	NA	19	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,KAT6A,PLAT,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AA.A01Q.01A	8	41654942	41844922	17	0.279	NEUTRAL	NA	2	"ANK1,KAT6A"
TCGA.CK.5914.01A	8	41654942	41844922	18	0.0098	NEUTRAL	NA	2	"ANK1,KAT6A"
TCGA.AA.A02K.01A	8	41654943	97614583	1773	0.0769	NEUTRAL	NA	196	Too-Many
TCGA.A6.5656	8	41723578	43228620	212	-0.0255	NEUTRAL	NA	19	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,KAT6A,PLAT,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.A6.6142	8	41743392	43655229	234	0.0969	NEUTRAL	NA	19	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,KAT6A,PLAT,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AG.A01W.01A	8	41774100	42156565	32	0.2098	NEUTRAL	NA	4	"AP3M2,IKBKB,KAT6A,PLAT"
TCGA.AA.A02E.01A	8	41798432	42150897	39	-0.3091	NEUTRAL	NA	4	"AP3M2,IKBKB,KAT6A,PLAT"
TCGA.AA.A00Q.01A	8	41800272	42698106	106	0.1484	NEUTRAL	NA	12	"AP3M2,CHRNA6,CHRNB3,DKK4,IKBKB,KAT6A,PLAT,POLB,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.A6.2685	8	41885119	42599488	127	-0.0245	NEUTRAL	NA	10	"AP3M2,CHRNB3,DKK4,IKBKB,KAT6A,PLAT,POLB,SLC20A2,SMIM19,VDAC3"
TCGA.A6.5662	8	41887473	80099220	9367	-0.0358	NEUTRAL	NA	123	Too-Many
TCGA.AA.A01Q.01A	8	41905845	42212972	47	-0.0929	NEUTRAL	NA	5	"AP3M2,IKBKB,KAT6A,PLAT,POLB"
TCGA.CM.4752	8	41979430	42404821	83	0.1059	NEUTRAL	NA	8	"AP3M2,DKK4,IKBKB,PLAT,POLB,SLC20A2,SMIM19,VDAC3"
TCGA.G4.6299	8	42023524	42306812	62	-0.1125	NEUTRAL	NA	7	"AP3M2,DKK4,IKBKB,PLAT,POLB,SLC20A2,VDAC3"
TCGA.CK.5914.01A	8	42033459	42174187	22	0.0099	NEUTRAL	NA	2	"IKBKB,PLAT"
TCGA.AD.6901	8	42033912	50906619	830	0.1714	NEUTRAL	NA	25	"C8orf22,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,HGSNAT,HOOK3,IKBKB,MCM4,PLAT,POLB,POMK,POTEA,PRKDC,RNF170,SLC20A2,SMIM19,SNAI2,SNTG1,SPIDR,THAP1,UBE2V2,VDAC3"
TCGA.AG.4009.01A	8	42040206	42220087	36	0.1954	NEUTRAL	NA	3	"IKBKB,PLAT,POLB"
TCGA.AG.A01W.01A	8	42156879	43173640	137	-0.2723	NEUTRAL	NA	15	"CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AG.3909.01A	8	42174187	42183458	8	-0.1525	NEUTRAL	NA	1	IKBKB
TCGA.AA.A00N.01A	8	42175133	42234404	26	-0.3972	NEUTRAL	NA	3	"DKK4,IKBKB,POLB"
TCGA.AD.6888	8	42186025	49221731	390	-0.0437	NEUTRAL	NA	20	"CEBPD,CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,MCM4,POLB,POMK,POTEA,PRKDC,RNF170,SLC20A2,SMIM19,SPIDR,THAP1,UBE2V2,VDAC3"
TCGA.AG.A025.01A	8	42186621	146279416	3490	0.0286	NEUTRAL	NA	416	Too-Many
TCGA.AA.3509.01A	8	42196096	43147576	110	0.0332	NEUTRAL	NA	13	"CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,POLB,POMK,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AG.3909.01A	8	42206471	42234404	14	-0.0101	NEUTRAL	NA	2	"DKK4,POLB"
TCGA.AA.A01Q.01A	8	42214618	42234404	10	0.3445	NEUTRAL	NA	2	"DKK4,POLB"
TCGA.AG.4009.01A	8	42226720	42275319	16	-0.403	NEUTRAL	NA	4	"DKK4,POLB,SLC20A2,VDAC3"
TCGA.AA.A010.01A	8	42227320	42262848	14	-0.0483	NEUTRAL	NA	3	"DKK4,POLB,VDAC3"
TCGA.AG.3594	8	42274959	64618025	5090	-0.0224	NEUTRAL	NA	60	"ASPH,ATP6V1H,C8orf22,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,CYP7A1,EFCAB1,FAM110B,FAM150A,FNTA,GGH,HGSNAT,HOOK3,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,POMK,POTEA,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,SDCBP,SDR16C5,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,THAP1,TMEM68,TOX,TTPA,UBE2V2,UBXN2B,XKR4,YTHDF3"
TCGA.AA.A00N.01A	8	42275319	42752206	36	-0.2855	NEUTRAL	NA	7	"CHRNA6,CHRNB3,HOOK3,RNF170,SLC20A2,SMIM19,THAP1"
TCGA.AG.3909.01A	8	42275319	42761267	35	0.2163	NEUTRAL	NA	7	"CHRNA6,CHRNB3,HOOK3,RNF170,SLC20A2,SMIM19,THAP1"
TCGA.AA.A01Q.01A	8	42275319	70533261	598	0.0362	NEUTRAL	NA	86	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,FAM110B,FAM150A,FNTA,GGH,HGSNAT,HOOK3,IMPAD1,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,POMK,POTEA,PPP1R42,PREX2,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,SULF1,TCEA1,TCF24,TGS1,THAP1,TMEM68,TOX,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.AG.4009.01A	8	42286222	42623435	24	0.0924	NEUTRAL	NA	4	"CHRNA6,CHRNB3,SLC20A2,SMIM19"
TCGA.D5.6535	8	42330369	146293413	29620	0.2632	NEUTRAL	NA	412	Too-Many
TCGA.AA.3664	8	42367879	54918222	1966	-0.0783	NEUTRAL	NA	30	"ATP6V1H,C8orf22,CEBPD,CHRNA6,CHRNB3,EFCAB1,FAM150A,FNTA,HGSNAT,HOOK3,MCM4,NPBWR1,OPRK1,PCMTD1,POMK,POTEA,PRKDC,PXDNL,RB1CC1,RGS20,RNF170,SLC20A2,SMIM19,SNAI2,SNTG1,SPIDR,ST18,TCEA1,THAP1,UBE2V2"
TCGA.AG.3731	8	42384931	78638027	8980	0.3362	NEUTRAL	NA	113	Too-Many
TCGA.AZ.6603	8	42429936	127489086	22574	0.2904	NEUTRAL	NA	291	Too-Many
TCGA.AG.3881	8	42455078	43520354	97	-0.2367	NEUTRAL	NA	9	"CHRNA6,CHRNB3,FNTA,HGSNAT,HOOK3,POMK,POTEA,RNF170,THAP1"
TCGA.AA.3560	8	42507739	146293413	29580	0	NEUTRAL	NA	410	Too-Many
TCGA.AZ.6600	8	42599244	146293413	29541	0.1931	NEUTRAL	NA	409	Too-Many
TCGA.A6.2685	8	42604790	146293413	29514	0.2451	NEUTRAL	NA	409	Too-Many
TCGA.AF.2691	8	42604790	146293413	29564	0.3333	NEUTRAL	NA	409	Too-Many
TCGA.NH.A6GB	8	42686198	42801654	11	0.2027	NEUTRAL	NA	3	"HOOK3,RNF170,THAP1"
TCGA.AA.A00L.01A	8	42711290	42814315	14	0.1622	NEUTRAL	NA	2	"HOOK3,RNF170"
TCGA.AZ.6606	8	42711605	102256946	14820	0.3286	NEUTRAL	NA	208	Too-Many
TCGA.CA.6715	8	42727451	56673723	2502	-0.0245	NEUTRAL	NA	31	"ATP6V1H,C8orf22,CEBPD,EFCAB1,FAM150A,FNTA,HGSNAT,HOOK3,LYPLA1,MCM4,MRPL15,NPBWR1,OPRK1,PCMTD1,POMK,POTEA,PRKDC,PXDNL,RB1CC1,RGS20,RNF170,RP1,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TMEM68,UBE2V2,XKR4"
TCGA.CM.6166	8	42749687	43194920	36	0.3311	NEUTRAL	NA	6	"FNTA,HGSNAT,HOOK3,POMK,POTEA,RNF170"
TCGA.AA.A010.01A	8	42798405	42911453	19	-0.2056	NEUTRAL	NA	2	"FNTA,HOOK3"
TCGA.AG.3909.01A	8	42805477	42873489	17	0.2205	NEUTRAL	NA	1	HOOK3
TCGA.AA.A00N.01A	8	42805477	42911453	18	-0.184	NEUTRAL	NA	2	"FNTA,HOOK3"
TCGA.AG.4009.01A	8	42812170	42868461	15	-0.1535	NEUTRAL	NA	1	HOOK3
TCGA.AA.3869	8	42851075	43075537	12	-0.3464	NEUTRAL	NA	4	"FNTA,HGSNAT,HOOK3,POMK"
TCGA.AA.A00L.01A	8	42873489	49643860	44	0.123	NEUTRAL	NA	11	"CEBPD,EFCAB1,FNTA,HGSNAT,HOOK3,MCM4,POMK,POTEA,PRKDC,SPIDR,UBE2V2"
TCGA.AG.3885	8	42879511	146293413	29546	-0.0068	NEUTRAL	NA	406	Too-Many
TCGA.A6.6137	8	42951983	43086927	12	-0.3889	NEUTRAL	NA	2	"HGSNAT,POMK"
TCGA.A6.2683	8	42951983	59686672	3484	-0.3202	NEUTRAL	NA	42	"ATP6V1H,C8orf22,CEBPD,CHCHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,HGSNAT,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,POMK,POTEA,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,UBE2V2,UBXN2B,XKR4"
TCGA.AG.3891.01A	8	42958650	54852086	261	0.1438	NEUTRAL	NA	21	"ATP6V1H,C8orf22,CEBPD,EFCAB1,FAM150A,HGSNAT,MCM4,NPBWR1,OPRK1,PCMTD1,POMK,POTEA,PRKDC,PXDNL,RB1CC1,RGS20,SNAI2,SNTG1,SPIDR,ST18,UBE2V2"
TCGA.AG.A00Y.01A	8	42958650	146279416	3414	0.2516	NEUTRAL	NA	404	Too-Many
TCGA.CA.5797	8	42970938	43145297	18	0.2858	NEUTRAL	NA	2	"HGSNAT,POMK"
TCGA.CI.6621	8	42970938	146293413	29477	0.3077	NEUTRAL	NA	404	Too-Many
TCGA.AG.3909.01A	8	42977239	43028770	9	-0.0709	NEUTRAL	NA	2	"HGSNAT,POMK"
TCGA.AG.A00H.01A	8	43025677	144735016	3195	0.2121	NEUTRAL	NA	350	Too-Many
TCGA.AA.A01D.01A	8	43048842	66605832	490	0.0802	NEUTRAL	NA	55	"ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,CA8,CEBPD,CHCHD7,CHD7,CLVS1,CYP7A1,CYP7B1,EFCAB1,FAM110B,FAM150A,GGH,HGSNAT,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,MTFR1,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,POTEA,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,TOX,TTPA,UBE2V2,UBXN2B,XKR4,YTHDF3"
TCGA.AA.3869	8	43078866	146293413	29509	0.3348	NEUTRAL	NA	402	Too-Many
TCGA.AA.A01Z	8	43108206	50617619	616	-0.0371	NEUTRAL	NA	9	"C8orf22,CEBPD,EFCAB1,MCM4,POTEA,PRKDC,SNAI2,SPIDR,UBE2V2"
TCGA.AH.6549.01A	8	43147576	43211851	11	-0.1313	NEUTRAL	NA	1	POTEA
TCGA.AA.A010.01A	8	43147576	48320374	13	-0.2397	NEUTRAL	NA	2	"POTEA,SPIDR"
TCGA.AG.3906.01A	8	43147576	48824922	84	-0.2031	NEUTRAL	NA	4	"CEBPD,POTEA,PRKDC,SPIDR"
TCGA.AG.4009.01A	8	43152111	56986572	300	-0.1001	NEUTRAL	NA	29	"ATP6V1H,C8orf22,CEBPD,EFCAB1,FAM150A,LYN,LYPLA1,MCM4,MRPL15,NPBWR1,OPRK1,PCMTD1,POTEA,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,UBE2V2,XKR4"
TCGA.CK.5914.01A	8	43159836	48641923	20	0.1736	NEUTRAL	NA	2	"POTEA,SPIDR"
TCGA.AG.3909.01A	8	43170972	48511496	12	0.3528	NEUTRAL	NA	2	"POTEA,SPIDR"
TCGA.AA.A00N.01A	8	43170972	48719656	37	0.0752	NEUTRAL	NA	4	"CEBPD,POTEA,PRKDC,SPIDR"
TCGA.AA.3509.01A	8	43211851	49637233	113	0.1372	NEUTRAL	NA	7	"CEBPD,EFCAB1,MCM4,POTEA,PRKDC,SPIDR,UBE2V2"
TCGA.CM.6166	8	43265149	43778913	29	-0.0393	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	8	43266749	48804477	29	0.3122	NEUTRAL	NA	3	"CEBPD,PRKDC,SPIDR"
TCGA.AA.3858	8	43328064	43778913	26	-0.096	NEUTRAL	NA	0	None
TCGA.AG.3728	8	43409350	146293413	29520	0.0421	NEUTRAL	NA	401	Too-Many
TCGA.DM.A1D9	8	43413954	47354617	44	0.0752	NEUTRAL	NA	0	None
TCGA.AA.3872	8	43455242	43679529	13	-0.4607	NEUTRAL	NA	0	None
TCGA.AG.3883	8	43520354	59621077	3416	0.2078	NEUTRAL	NA	39	"ATP6V1H,C8orf22,CEBPD,CHCHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,UBE2V2,UBXN2B,XKR4"
TCGA.NH.A6GB	8	43604361	43778913	12	-0.1645	NEUTRAL	NA	0	None
TCGA.AG.3881	8	43604361	146293413	29508	0.2925	NEUTRAL	NA	401	Too-Many
TCGA.A6.A567	8	43630632	146293413	29257	0.0768	NEUTRAL	NA	401	Too-Many
TCGA.AG.3890	8	43663674	71113620	6549	-0.3049	NEUTRAL	NA	78	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,FAM110B,FAM150A,GGH,IMPAD1,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NCOA2,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PRDM14,PREX2,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SLCO5A1,SNAI2,SNTG1,SOX17,SPIDR,ST18,SULF1,TCEA1,TCF24,TGS1,TMEM68,TOX,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.CM.5868	8	43663674	94411880	12530	0.2364	NEUTRAL	NA	155	Too-Many
TCGA.AY.A8YK	8	43679529	51166925	717	0.1636	NEUTRAL	NA	9	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,SNAI2,SNTG1,SPIDR,UBE2V2"
TCGA.AZ.6607	8	43679529	146293413	29408	0.1374	NEUTRAL	NA	401	Too-Many
TCGA.DM.A28A	8	43762680	47175404	23	-0.2753	NEUTRAL	NA	0	None
TCGA.AA.3860	8	43762680	90562750	11624	0.0066	NEUTRAL	NA	140	Too-Many
TCGA.AA.3866	8	43762680	146293413	29460	0.1629	NEUTRAL	NA	401	Too-Many
TCGA.F5.6863	8	43778913	47911824	117	0.2471	NEUTRAL	NA	0	None
TCGA.DY.A1DC	8	43778913	52745849	1163	0.3558	NEUTRAL	NA	11	"C8orf22,CEBPD,EFCAB1,MCM4,PCMTD1,PRKDC,PXDNL,SNAI2,SNTG1,SPIDR,UBE2V2"
TCGA.EI.7002	8	43778913	146293413	29423	0.0377	NEUTRAL	NA	401	Too-Many
TCGA.CA.5797	8	46924210	47001430	10	0.1814	NEUTRAL	NA	0	None
TCGA.AA.3850	8	46924210	47354617	27	0.36125	NEUTRAL	NA	0	None
TCGA.DM.A280	8	46924210	47384962	28	0.162	NEUTRAL	NA	0	None
TCGA.QG.A5Z1	8	46924210	47385091	29	-0.1968	NEUTRAL	NA	0	None
TCGA.DC.6155	8	46924210	49333686	256	-0.4885	NEUTRAL	NA	5	"CEBPD,MCM4,PRKDC,SPIDR,UBE2V2"
TCGA.D5.5540	8	46924210	52079665	939	-0.0468	NEUTRAL	NA	9	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,SNAI2,SNTG1,SPIDR,UBE2V2"
TCGA.AG.3726	8	46924210	54745537	1811	0.3762	NEUTRAL	NA	17	"ATP6V1H,C8orf22,CEBPD,EFCAB1,FAM150A,MCM4,NPBWR1,OPRK1,PCMTD1,PRKDC,PXDNL,RB1CC1,SNAI2,SNTG1,SPIDR,ST18,UBE2V2"
TCGA.AA.3976	8	46924210	59571286	3390	0.2652	NEUTRAL	NA	39	"ATP6V1H,C8orf22,CEBPD,CHCHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,UBE2V2,UBXN2B,XKR4"
TCGA.DM.A28F	8	46924210	61052453	3823	0.3015	NEUTRAL	NA	40	"ATP6V1H,C8orf22,CEBPD,CHCHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,TOX,UBE2V2,UBXN2B,XKR4"
TCGA.AF.3913	8	46924210	62553303	4331	0.3553	NEUTRAL	NA	45	"ASPH,ATP6V1H,C8orf22,CA8,CEBPD,CHCHD7,CHD7,CLVS1,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,TOX,UBE2V2,UBXN2B,XKR4"
TCGA.AA.3851	8	46924210	86181869	10613	0.2922	NEUTRAL	NA	127	Too-Many
TCGA.4N.A93T	8	46924210	146293413	29481	0.0092	NEUTRAL	NA	401	Too-Many
TCGA.BM.6198	8	46924356	96448153	13145	0.08205	NEUTRAL	NA	172	Too-Many
TCGA.DC.5869	8	46924356	108134483	16584	0.2865	NEUTRAL	NA	222	Too-Many
TCGA.AG.3742	8	46924356	108693222	16720	0.0087	NEUTRAL	NA	223	Too-Many
TCGA.AA.3688	8	46924356	146293413	29495	-0.0356	NEUTRAL	NA	401	Too-Many
TCGA.CK.5912	8	46924356	146293413	29402	0.1049	NEUTRAL	NA	401	Too-Many
TCGA.A6.2671	8	46936839	47674608	67	0.3729	NEUTRAL	NA	0	None
TCGA.F4.6460	8	46936839	50282159	504	0.0003	NEUTRAL	NA	8	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,SNAI2,SPIDR,UBE2V2"
TCGA.AZ.5403	8	46940021	50704083	586	0.3482	NEUTRAL	NA	8	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,SNAI2,SPIDR,UBE2V2"
TCGA.DM.A28A	8	47190620	128788984	23027	0.0217	NEUTRAL	NA	285	Too-Many
TCGA.AA.3872	8	47397088	59838132	3471	0.2871	NEUTRAL	NA	40	"ATP6V1H,C8orf22,CEBPD,CHCHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,TOX,UBE2V2,UBXN2B,XKR4"
TCGA.AA.3811	8	47397702	75307830	7950	0.1243	NEUTRAL	NA	97	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CEBPD,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,EYA1,FAM110B,FAM150A,GDAP1,GGH,IMPAD1,JPH1,KCNB2,LACTB2,LY96,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PRDM14,PREX2,PRKDC,PXDNL,RAB2A,RB1CC1,RDH10,RGS20,RP1,RPL7,RPS20,RRS1,SBSPON,SDCBP,SDR16C5,SGK3,SLCO5A1,SNAI2,SNTG1,SOX17,SPIDR,ST18,STAU2,SULF1,TCEA1,TCEB1,TCF24,TERF1,TGS1,TMEM68,TMEM70,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBE2V2,UBE2W,UBXN2B,VCPIP1,XKR4,XKR9,YTHDF3"
TCGA.AA.3955	8	47397702	113923304	17987	-0.0283	NEUTRAL	NA	235	Too-Many
TCGA.DM.A1D9	8	47448837	142580816	28806	0.1505	NEUTRAL	NA	315	Too-Many
TCGA.DM.A280	8	47463861	146293413	29384	-0.0139	NEUTRAL	NA	401	Too-Many
TCGA.AG.3580	8	47750537	146293413	29406	0.0039	NEUTRAL	NA	401	Too-Many
TCGA.AA.3850	8	47817532	47888774	19	0.28045	NEUTRAL	NA	0	None
TCGA.AA.3850	8	47897726	48468834	50	-0.15915	NEUTRAL	NA	1	SPIDR
TCGA.AF.3914.01A	8	48308934	144400156	3253	0.3669	NEUTRAL	NA	337	Too-Many
TCGA.A6.2677	8	48309586	56250177	1927	0.1143	NEUTRAL	NA	24	"ATP6V1H,C8orf22,CEBPD,EFCAB1,FAM150A,LYPLA1,MCM4,MRPL15,NPBWR1,OPRK1,PCMTD1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,UBE2V2,XKR4"
TCGA.AA.3850	8	48471044	49824204	209	0.32575	NEUTRAL	NA	6	"CEBPD,EFCAB1,MCM4,PRKDC,SPIDR,UBE2V2"
TCGA.AA.3867	8	48560705	71046410	6372	0.3401	NEUTRAL	NA	78	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,FAM110B,FAM150A,GGH,IMPAD1,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NCOA2,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PRDM14,PREX2,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SLCO5A1,SNAI2,SNTG1,SOX17,SPIDR,ST18,SULF1,TCEA1,TCF24,TGS1,TMEM68,TOX,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.AG.3909.01A	8	48586336	48719656	25	-0.4519	NEUTRAL	NA	3	"CEBPD,PRKDC,SPIDR"
TCGA.AG.A02X.01A	8	48639722	90949212	1212	-0.2611	NEUTRAL	NA	143	Too-Many
TCGA.AZ.4684.01A	8	48647849	49637233	99	0.3711	NEUTRAL	NA	6	"CEBPD,EFCAB1,MCM4,PRKDC,SPIDR,UBE2V2"
TCGA.AA.A00Q.01A	8	48715820	101177990	1310	0.1539	NEUTRAL	NA	194	Too-Many
TCGA.A6.3810.01A	8	48739168	120850459	2391	0.1868	NEUTRAL	NA	249	Too-Many
TCGA.AA.A00D.01A	8	48761685	48771358	2	-0.1007	NEUTRAL	NA	1	PRKDC
TCGA.CK.5914.01A	8	48761685	48848252	41	-0.1066	NEUTRAL	NA	1	PRKDC
TCGA.AA.A00N.01A	8	48761685	48848864	42	0.2778	NEUTRAL	NA	1	PRKDC
TCGA.AG.3909.01A	8	48761685	48866143	46	8.00E-04	NEUTRAL	NA	1	PRKDC
TCGA.AA.3967.01A	8	48815132	51415321	54	-0.2893	NEUTRAL	NA	7	"C8orf22,EFCAB1,MCM4,PRKDC,SNAI2,SNTG1,UBE2V2"
TCGA.AG.3906.01A	8	48826443	48868385	18	0.2212	NEUTRAL	NA	1	PRKDC
TCGA.AA.A010.01A	8	48827832	52287130	70	0.0779	NEUTRAL	NA	8	"C8orf22,EFCAB1,MCM4,PRKDC,PXDNL,SNAI2,SNTG1,UBE2V2"
TCGA.A6.2681	8	48833285	56483326	2185	-0.4873	NEUTRAL	NA	22	"ATP6V1H,C8orf22,EFCAB1,FAM150A,LYPLA1,MCM4,MRPL15,NPBWR1,OPRK1,PCMTD1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,SNAI2,SNTG1,SOX17,ST18,TCEA1,UBE2V2,XKR4"
TCGA.AG.A01W.01A	8	48860231	48882226	8	0.1759	NEUTRAL	NA	2	"MCM4,PRKDC"
TCGA.AG.3906.01A	8	48869681	52320590	52	-0.1158	NEUTRAL	NA	8	"C8orf22,EFCAB1,MCM4,PRKDC,PXDNL,SNAI2,SNTG1,UBE2V2"
TCGA.AG.A01W.01A	8	48972225	49032235	26	0.1709	NEUTRAL	NA	1	UBE2V2
TCGA.EI.6508	8	48974615	146293413	29275	-0.003	NEUTRAL	NA	396	Too-Many
TCGA.AG.A01W.01A	8	49044905	67868486	477	0.3725	NEUTRAL	NA	62	"ADHFE1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,CRH,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,FAM110B,FAM150A,GGH,IMPAD1,LYN,LYPLA1,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SNAI2,SNTG1,SOX17,ST18,TCEA1,TCF24,TGS1,TMEM68,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.AD.6888	8	49222508	146293413	29218	0.294	NEUTRAL	NA	396	Too-Many
TCGA.A6.3807	8	49253637	62458018	4048	-0.2298	NEUTRAL	NA	40	"ASPH,ATP6V1H,C8orf22,CA8,CHCHD7,CHD7,CLVS1,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,ST18,TCEA1,TGS1,TMEM68,TOX,UBXN2B,XKR4"
TCGA.CM.6675	8	49333686	135678803	25714	0.0021	NEUTRAL	NA	297	Too-Many
TCGA.AA.3941	8	49551945	49552004	3	-0.5027	NEUTRAL	NA	0	None
TCGA.AA.A00L.01A	8	49647584	51705182	20	-0.3562	NEUTRAL	NA	4	"C8orf22,EFCAB1,SNAI2,SNTG1"
TCGA.AG.A02G.01A	8	49647584	91893214	1140	0.0638	NEUTRAL	NA	142	Too-Many
TCGA.AA.A024.01A	8	49647584	146279416	3324	0.0034	NEUTRAL	NA	396	Too-Many
TCGA.QG.A5Z1	8	49676320	50648089	237	-0.0546	NEUTRAL	NA	2	"C8orf22,SNAI2"
TCGA.F5.6810	8	49801280	132982823	24289	0.1828	NEUTRAL	NA	284	Too-Many
TCGA.AA.3850	8	49830141	52518722	719	-0.37235	NEUTRAL	NA	4	"C8orf22,PXDNL,SNAI2,SNTG1"
TCGA.AH.6549.01A	8	49831316	97345648	1461	-0.0453	NEUTRAL	NA	170	Too-Many
TCGA.AA.3941	8	49844988	50133937	96	0.2736	NEUTRAL	NA	1	C8orf22
TCGA.G4.6298	8	49900673	146293413	29084	0.2964	NEUTRAL	NA	394	Too-Many
TCGA.AG.3909.01A	8	49986565	52258361	22	0.0899	NEUTRAL	NA	3	"C8orf22,PXDNL,SNTG1"
TCGA.AG.A00C.01A	8	49987710	52258361	21	-0.3595	NEUTRAL	NA	3	"C8orf22,PXDNL,SNTG1"
TCGA.AG.A023.01A	8	49987710	142161686	2931	0.3548	NEUTRAL	NA	304	Too-Many
TCGA.AA.3941	8	50139881	52028532	452	-0.0392	NEUTRAL	NA	1	SNTG1
TCGA.CI.6623	8	50189360	146293413	28946	0.2286	NEUTRAL	NA	393	Too-Many
TCGA.AH.6547	8	50195184	53440626	943	0.1392	NEUTRAL	NA	4	"PCMTD1,PXDNL,SNTG1,ST18"
TCGA.F4.6460	8	50379249	90811368	11176	0.1074	NEUTRAL	NA	133	Too-Many
TCGA.A6.2680	8	50673769	146293413	28843	0.1434	NEUTRAL	NA	393	Too-Many
TCGA.AA.A01Z	8	50676280	54454600	1157	-0.0008	NEUTRAL	NA	8	"FAM150A,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,SNTG1,ST18"
TCGA.AM.5821	8	50704083	103976109	14751	0.3306	NEUTRAL	NA	201	Too-Many
TCGA.AZ.5403	8	50724158	50776713	20	-0.1013	NEUTRAL	NA	0	None
TCGA.AD.6901	8	50913291	83950491	9492	-0.265	NEUTRAL	NA	114	Too-Many
TCGA.QG.A5Z1	8	51086330	51348757	77	-0.1182	NEUTRAL	NA	1	SNTG1
TCGA.AY.A8YK	8	51170361	51195737	11	-0.4609	NEUTRAL	NA	1	SNTG1
TCGA.EI.6513	8	51183692	52544596	376	-0.0032	NEUTRAL	NA	2	"PXDNL,SNTG1"
TCGA.AY.A8YK	8	51196412	51980820	185	0.1961	NEUTRAL	NA	1	SNTG1
TCGA.AA.A02F.01A	8	51351034	53554889	72	0.1184	NEUTRAL	NA	6	"FAM150A,PCMTD1,PXDNL,RB1CC1,SNTG1,ST18"
TCGA.QG.A5Z1	8	51613482	51789318	34	-0.0799	NEUTRAL	NA	1	SNTG1
TCGA.AA.3967.01A	8	51664510	52325663	13	-0.4532	NEUTRAL	NA	2	"PXDNL,SNTG1"
TCGA.AF.2687	8	51737728	146293413	28546	0.2212	NEUTRAL	NA	392	Too-Many
TCGA.F5.6813	8	51907529	55790712	1181	-0.0305	NEUTRAL	NA	14	"ATP6V1H,FAM150A,LYPLA1,MRPL15,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,RGS20,RP1,SOX17,ST18,TCEA1"
TCGA.AZ.4684.01A	8	52252136	53477579	51	0.0868	NEUTRAL	NA	4	"FAM150A,PCMTD1,PXDNL,ST18"
TCGA.AG.A00C.01A	8	52284436	52336103	8	0.2901	NEUTRAL	NA	1	PXDNL
TCGA.AA.A00L.01A	8	52284436	53045576	15	0.1044	NEUTRAL	NA	3	"PCMTD1,PXDNL,ST18"
TCGA.AG.3906.01A	8	52336103	54967558	97	-0.0517	NEUTRAL	NA	11	"ATP6V1H,FAM150A,LYPLA1,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,RGS20,ST18,TCEA1"
TCGA.AG.A00C.01A	8	52339169	56922440	142	0.012	NEUTRAL	NA	18	"ATP6V1H,FAM150A,LYN,LYPLA1,MRPL15,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,RGS20,RP1,SOX17,ST18,TCEA1,TGS1,TMEM68,XKR4"
TCGA.AA.A010.01A	8	52359514	57080535	154	0.0736	NEUTRAL	NA	21	"ATP6V1H,FAM150A,LYN,LYPLA1,MOS,MRPL15,NPBWR1,OPRK1,PCMTD1,PLAG1,PXDNL,RB1CC1,RGS20,RP1,RPS20,SOX17,ST18,TCEA1,TGS1,TMEM68,XKR4"
TCGA.AG.3909.01A	8	52361515	54656097	64	0.018	NEUTRAL	NA	8	"ATP6V1H,FAM150A,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,ST18"
TCGA.CA.5797	8	52368150	69208365	4925	0.001	NEUTRAL	NA	64	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,FAM110B,FAM150A,GGH,IMPAD1,LYN,LYPLA1,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PREX2,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SOX17,ST18,TCEA1,TCF24,TGS1,TMEM68,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.CK.5914.01A	8	52384710	54934578	90	0.1365	NEUTRAL	NA	10	"ATP6V1H,FAM150A,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,RGS20,ST18,TCEA1"
TCGA.AA.3967.01A	8	52412193	67589906	411	-0.3224	NEUTRAL	NA	55	"ADHFE1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,CRH,CYP7A1,CYP7B1,DNAJC5B,FAM110B,FAM150A,GGH,IMPAD1,LYN,LYPLA1,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SOX17,ST18,TCEA1,TGS1,TMEM68,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.AA.3850	8	52528789	54117694	536	0.11325	NEUTRAL	NA	6	"FAM150A,NPBWR1,PCMTD1,PXDNL,RB1CC1,ST18"
TCGA.A6.2686	8	52536827	131265217	22868	0.3179	NEUTRAL	NA	279	Too-Many
TCGA.AA.A00F.01A	8	52732891	70515400	477	-0.0353	NEUTRAL	NA	65	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,FAM110B,FAM150A,GGH,IMPAD1,LYN,LYPLA1,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PREX2,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SOX17,ST18,SULF1,TCEA1,TCF24,TGS1,TMEM68,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.CM.4747	8	53055352	56163941	953	-0.0139	NEUTRAL	NA	13	"ATP6V1H,FAM150A,LYPLA1,MRPL15,NPBWR1,OPRK1,RB1CC1,RGS20,RP1,SOX17,ST18,TCEA1,XKR4"
TCGA.AF.2689	8	53202654	146293413	28136	0.2951	NEUTRAL	NA	390	Too-Many
TCGA.SS.A7HO	8	53428949	140824620	26943	0.0248	NEUTRAL	NA	295	Too-Many
TCGA.AH.6547	8	53669624	146293413	27992	0.1444	NEUTRAL	NA	387	Too-Many
TCGA.AA.3850	8	54127101	54745863	181	0.02515	NEUTRAL	NA	2	"ATP6V1H,OPRK1"
TCGA.AG.3896	8	54439838	65561377	3385	0.3432	NEUTRAL	NA	35	"ASPH,ATP6V1H,BHLHE22,CA8,CHCHD7,CHD7,CLVS1,CYP7A1,CYP7B1,FAM110B,GGH,IMPAD1,LYN,LYPLA1,MOS,MRPL15,NKAIN3,NSMAF,PENK,PLAG1,RAB2A,RGS20,RP1,RPS20,SDCBP,SDR16C5,SOX17,TCEA1,TGS1,TMEM68,TOX,TTPA,UBXN2B,XKR4,YTHDF3"
TCGA.AA.A01Z	8	54495676	54528265	15	-0.0556	NEUTRAL	NA	0	None
TCGA.AA.A00N.01A	8	54669067	54978249	34	-0.2915	NEUTRAL	NA	4	"ATP6V1H,LYPLA1,RGS20,TCEA1"
TCGA.AZ.4684.01A	8	54714311	57905821	107	-0.0213	NEUTRAL	NA	18	"ATP6V1H,CHCHD7,IMPAD1,LYN,LYPLA1,MOS,MRPL15,PENK,PLAG1,RGS20,RP1,RPS20,SDR16C5,SOX17,TCEA1,TGS1,TMEM68,XKR4"
TCGA.AA.3509.01A	8	54723664	57228527	93	0.2167	NEUTRAL	NA	16	"ATP6V1H,CHCHD7,LYN,LYPLA1,MOS,MRPL15,PLAG1,RGS20,RP1,RPS20,SDR16C5,SOX17,TCEA1,TGS1,TMEM68,XKR4"
TCGA.AG.3726	8	54745863	58675165	1258	0.003	NEUTRAL	NA	18	"ATP6V1H,CHCHD7,IMPAD1,LYN,LYPLA1,MOS,MRPL15,PENK,PLAG1,RGS20,RP1,RPS20,SDR16C5,SOX17,TCEA1,TGS1,TMEM68,XKR4"
TCGA.AA.3850	8	54748440	55500225	203	0.28685	NEUTRAL	NA	6	"ATP6V1H,LYPLA1,MRPL15,RGS20,SOX17,TCEA1"
TCGA.AG.3909.01A	8	54852086	54978249	21	-0.0732	NEUTRAL	NA	3	"LYPLA1,RGS20,TCEA1"
TCGA.EF.5830	8	54889117	54919890	9	-0.3075	NEUTRAL	NA	1	TCEA1
TCGA.AA.A01Z	8	54937830	55084781	11	-0.0242	NEUTRAL	NA	2	"LYPLA1,MRPL15"
TCGA.CK.5914.01A	8	54960571	59513828	123	-0.4431	NEUTRAL	NA	20	"CHCHD7,CYP7A1,FAM110B,IMPAD1,LYN,LYPLA1,MOS,MRPL15,NSMAF,PENK,PLAG1,RP1,RPS20,SDCBP,SDR16C5,SOX17,TGS1,TMEM68,UBXN2B,XKR4"
TCGA.AG.3906.01A	8	55060019	57080535	47	0.0091	NEUTRAL	NA	10	"LYN,MOS,MRPL15,PLAG1,RP1,RPS20,SOX17,TGS1,TMEM68,XKR4"
TCGA.AA.A01Z	8	55139698	56062661	321	-0.0222	NEUTRAL	NA	3	"RP1,SOX17,XKR4"
TCGA.AG.3891.01A	8	55370652	55533475	4	-0.2732	NEUTRAL	NA	2	"RP1,SOX17"
TCGA.AA.3850	8	55501637	55797673	66	-0.28945	NEUTRAL	NA	1	RP1
TCGA.AG.3891.01A	8	55534625	67763013	322	0.2041	NEUTRAL	NA	43	"ADHFE1,ARMC1,ASPH,BHLHE22,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,CRH,CYP7A1,CYP7B1,DNAJC5B,FAM110B,GGH,IMPAD1,LYN,MOS,MTFR1,MYBL1,NKAIN3,NSMAF,PDE7A,PENK,PLAG1,RAB2A,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,TGS1,TMEM68,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.AA.3850	8	55819969	57599804	620	0.06595	NEUTRAL	NA	10	"CHCHD7,LYN,MOS,PENK,PLAG1,RPS20,SDR16C5,TGS1,TMEM68,XKR4"
TCGA.AA.3681	8	55884104	96077374	10860	0.3016	NEUTRAL	NA	147	Too-Many
TCGA.AA.A00N.01A	8	56015017	56922440	31	-0.1054	NEUTRAL	NA	4	"LYN,TGS1,TMEM68,XKR4"
TCGA.AG.3909.01A	8	56015017	56922440	31	-0.1766	NEUTRAL	NA	4	"LYN,TGS1,TMEM68,XKR4"
TCGA.AA.3841	8	56116862	74048400	5340	0.2776	NEUTRAL	NA	64	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EYA1,FAM110B,GGH,IMPAD1,KCNB2,LACTB2,LYN,MCMDC2,MOS,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NSMAF,PDE7A,PENK,PLAG1,PPP1R42,PRDM14,PREX2,RAB2A,RPS20,RRS1,SBSPON,SDCBP,SDR16C5,SGK3,SLCO5A1,SULF1,TCF24,TERF1,TGS1,TMEM68,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBXN2B,VCPIP1,XKR4,XKR9,YTHDF3"
TCGA.CM.4747	8	56165733	146293413	27229	0.3029	NEUTRAL	NA	378	Too-Many
TCGA.F5.6813	8	56368355	57648794	395	-0.105	NEUTRAL	NA	10	"CHCHD7,LYN,MOS,PENK,PLAG1,RPS20,SDR16C5,TGS1,TMEM68,XKR4"
TCGA.AA.A01Z	8	56441997	57067974	194	0.0307	NEUTRAL	NA	5	"LYN,MOS,RPS20,TGS1,TMEM68"
TCGA.A6.2681	8	56491678	146293413	27087	0.1712	NEUTRAL	NA	377	Too-Many
TCGA.AY.6196	8	56722690	89665566	8831	0.1371	NEUTRAL	NA	115	Too-Many
TCGA.A6.5666	8	56806438	60890413	1321	0.2517	NEUTRAL	NA	14	"CHCHD7,CYP7A1,FAM110B,IMPAD1,LYN,MOS,NSMAF,PENK,PLAG1,RPS20,SDCBP,SDR16C5,TOX,UBXN2B"
TCGA.AG.A00C.01A	8	56985797	59352140	31	0.3449	NEUTRAL	NA	9	"CHCHD7,FAM110B,IMPAD1,MOS,PENK,PLAG1,RPS20,SDR16C5,UBXN2B"
TCGA.AA.3842	8	57100790	61440661	1376	0.0585	NEUTRAL	NA	13	"CA8,CHCHD7,CYP7A1,FAM110B,IMPAD1,NSMAF,PENK,PLAG1,RAB2A,SDCBP,SDR16C5,TOX,UBXN2B"
TCGA.AG.4009.01A	8	57213985	57228527	6	-0.0088	NEUTRAL	NA	1	SDR16C5
TCGA.AA.A010.01A	8	57213985	57358328	15	0.1243	NEUTRAL	NA	2	"PENK,SDR16C5"
TCGA.AG.3906.01A	8	57221440	67763013	272	-0.0722	NEUTRAL	NA	34	"ADHFE1,ARMC1,ASPH,BHLHE22,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHD7,CLVS1,CRH,CYP7A1,CYP7B1,DNAJC5B,FAM110B,GGH,IMPAD1,MTFR1,MYBL1,NKAIN3,NSMAF,PDE7A,PENK,RAB2A,RRS1,SDCBP,SDR16C5,SGK3,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,YTHDF3"
TCGA.A6.2677	8	57261545	60423654	1016	0.1374	NEUTRAL	NA	8	"CYP7A1,FAM110B,IMPAD1,NSMAF,PENK,SDCBP,TOX,UBXN2B"
TCGA.AA.A00N.01A	8	57285580	59352140	23	-0.3702	NEUTRAL	NA	4	"FAM110B,IMPAD1,PENK,UBXN2B"
TCGA.A6.3808.01A	8	57285580	70533261	449	0.2503	NEUTRAL	NA	43	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,FAM110B,GGH,IMPAD1,MCMDC2,MTFR1,MYBL1,NKAIN3,NSMAF,PDE7A,PENK,PPP1R42,PREX2,RAB2A,RRS1,SDCBP,SGK3,SULF1,TCF24,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,YTHDF3"
TCGA.AG.4015	8	57517040	82369707	7095	0.3319	NEUTRAL	NA	81	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CRISPLD1,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EYA1,FABP5,FAM110B,GDAP1,GGH,HEY1,HNF4G,IL7,IMPAD1,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MRPS28,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NSMAF,PAG1,PDE7A,PEX2,PI15,PKIA,PMP2,PPP1R42,PRDM14,PREX2,RAB2A,RDH10,RPL7,RRS1,SBSPON,SDCBP,SGK3,SLCO5A1,STAU2,STMN2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TOX,TPD52,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,UBXN2B,VCPIP1,XKR9,YTHDF3,ZBTB10,ZC2HC1A,ZFHX4,ZNF704"
TCGA.AA.A01Z	8	57599804	67262138	2796	-0.016	NEUTRAL	NA	24	"ARMC1,ASPH,BHLHE22,CA8,CHD7,CLVS1,CRH,CYP7A1,CYP7B1,DNAJC5B,FAM110B,GGH,IMPAD1,MTFR1,NKAIN3,NSMAF,PDE7A,RAB2A,SDCBP,TOX,TRIM55,TTPA,UBXN2B,YTHDF3"
TCGA.AA.3850	8	57633545	57705718	28	-0.40295	NEUTRAL	NA	0	None
TCGA.AA.3850	8	57751403	58200172	155	-0.02085	NEUTRAL	NA	1	IMPAD1
TCGA.AG.3909.01A	8	57876343	59058743	6	-0.1396	NEUTRAL	NA	2	"FAM110B,IMPAD1"
TCGA.AA.3850	8	58218043	59221210	368	-0.02695	NEUTRAL	NA	1	FAM110B
TCGA.AZ.4614	8	58514932	88418597	8000	0.0108	NEUTRAL	NA	104	Too-Many
TCGA.AG.3726	8	58678193	73154727	4132	0.3698	NEUTRAL	NA	50	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EYA1,FAM110B,GGH,LACTB2,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NSMAF,PDE7A,PPP1R42,PRDM14,PREX2,RAB2A,RRS1,SDCBP,SGK3,SLCO5A1,SULF1,TCF24,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBXN2B,VCPIP1,XKR9,YTHDF3"
TCGA.AA.A010.01A	8	59058743	65493331	170	0.11	NEUTRAL	NA	16	"ASPH,BHLHE22,CA8,CHD7,CLVS1,CYP7A1,FAM110B,GGH,NKAIN3,NSMAF,RAB2A,SDCBP,TOX,TTPA,UBXN2B,YTHDF3"
TCGA.AY.A8YK	8	59104279	59789699	253	0.1727	NEUTRAL	NA	5	"CYP7A1,NSMAF,SDCBP,TOX,UBXN2B"
TCGA.AA.3850	8	59254903	59703466	146	0.07845	NEUTRAL	NA	4	"CYP7A1,NSMAF,SDCBP,UBXN2B"
TCGA.AG.4009.01A	8	59329382	59358419	6	0.2637	NEUTRAL	NA	1	UBXN2B
TCGA.AG.3909.01A	8	59352140	63902681	139	0.0083	NEUTRAL	NA	11	"ASPH,CA8,CHD7,CLVS1,CYP7A1,NKAIN3,NSMAF,RAB2A,SDCBP,TOX,UBXN2B"
TCGA.AG.A00C.01A	8	59358419	63902681	138	-0.1687	NEUTRAL	NA	11	"ASPH,CA8,CHD7,CLVS1,CYP7A1,NKAIN3,NSMAF,RAB2A,SDCBP,TOX,UBXN2B"
TCGA.AG.4009.01A	8	59359911	60031397	48	-0.1628	NEUTRAL	NA	5	"CYP7A1,NSMAF,SDCBP,TOX,UBXN2B"
TCGA.AA.A02F.01A	8	59510374	95543143	1025	0.2004	NEUTRAL	NA	126	Too-Many
TCGA.CK.5914.01A	8	59514555	62531461	89	0.2012	NEUTRAL	NA	7	"ASPH,CA8,CHD7,CLVS1,NSMAF,RAB2A,TOX"
TCGA.AA.A01K.01A	8	59520262	77745498	577	0.337	NEUTRAL	NA	63	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CRISPLD1,CSPP1,CYP7B1,DNAJC5B,EYA1,GDAP1,GGH,HNF4G,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NSMAF,PDE7A,PI15,PPP1R42,PRDM14,PREX2,RAB2A,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,VCPIP1,XKR9,YTHDF3,ZFHX4"
TCGA.AG.3883	8	59629875	90319645	8174	0.219	NEUTRAL	NA	101	Too-Many
TCGA.A6.2683	8	59687562	65751466	1715	0.208	NEUTRAL	NA	12	"ASPH,BHLHE22,CA8,CHD7,CLVS1,CYP7B1,GGH,NKAIN3,RAB2A,TOX,TTPA,YTHDF3"
TCGA.AA.3982	8	59698400	61007867	373	0.3131	NEUTRAL	NA	1	TOX
TCGA.AA.3941	8	59703466	61007867	370	-0.1482	NEUTRAL	NA	1	TOX
TCGA.AA.3872	8	59849163	78411094	5294	0.2235	NEUTRAL	NA	63	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CRISPLD1,CSPP1,CYP7B1,DNAJC5B,EYA1,GDAP1,GGH,HNF4G,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,PDE7A,PEX2,PI15,PPP1R42,PRDM14,PREX2,RAB2A,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,VCPIP1,XKR9,YTHDF3,ZFHX4"
TCGA.A6.2678	8	60041977	146293413	25883	0.0096	NEUTRAL	NA	361	Too-Many
TCGA.CM.6163	8	60838382	76002786	4412	0.0201	NEUTRAL	NA	59	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CRISPLD1,CSPP1,CYP7B1,DNAJC5B,EYA1,GDAP1,GGH,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,PDE7A,PI15,PPP1R42,PRDM14,PREX2,RAB2A,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,VCPIP1,XKR9,YTHDF3"
TCGA.CM.6167	8	61004319	146293413	25648	0.1772	NEUTRAL	NA	361	Too-Many
TCGA.AA.3850	8	61007147	61811733	249	0.15215	NEUTRAL	NA	3	"CA8,CHD7,RAB2A"
TCGA.DM.A28F	8	61117902	75200679	4095	0.3139	NEUTRAL	NA	56	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7B1,DNAJC5B,EYA1,GGH,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,PDE7A,PPP1R42,PRDM14,PREX2,RAB2A,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,VCPIP1,XKR9,YTHDF3"
TCGA.D5.5540	8	61263076	64587361	1049	0.0402	NEUTRAL	NA	8	"ASPH,CHD7,CLVS1,GGH,NKAIN3,RAB2A,TTPA,YTHDF3"
TCGA.AG.4009.01A	8	61471405	63985467	92	-0.1129	NEUTRAL	NA	7	"ASPH,CHD7,CLVS1,GGH,NKAIN3,RAB2A,TTPA"
TCGA.AA.3850	8	61966698	62097258	52	0.17535	NEUTRAL	NA	0	None
TCGA.AA.3850	8	62120318	62192028	39	0.17785	NEUTRAL	NA	0	None
TCGA.AA.3850	8	62193745	64708238	770	-0.29155	NEUTRAL	NA	6	"ASPH,CLVS1,GGH,NKAIN3,TTPA,YTHDF3"
TCGA.DM.A1HB	8	62403793	146293413	24797	-0.013	NEUTRAL	NA	358	Too-Many
TCGA.A6.3807	8	62459659	75252629	3654	0.2644	NEUTRAL	NA	52	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,COPS5,CPA6,CRH,CSPP1,CYP7B1,DNAJC5B,EYA1,GGH,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,PDE7A,PPP1R42,PRDM14,PREX2,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,VCPIP1,XKR9,YTHDF3"
TCGA.AF.3913	8	62554330	64263769	526	-0.0065	NEUTRAL	NA	5	"ASPH,GGH,NKAIN3,TTPA,YTHDF3"
TCGA.AA.3982	8	62848875	62871141	13	-0.501	NEUTRAL	NA	0	None
TCGA.AA.3941	8	62872336	63721531	264	0.1024	NEUTRAL	NA	1	NKAIN3
TCGA.CK.5914.01A	8	63659469	63951177	11	-0.0654	NEUTRAL	NA	2	"GGH,NKAIN3"
TCGA.CM.6172	8	63790878	142437351	24035	0.0148	NEUTRAL	NA	269	Too-Many
TCGA.AA.3941	8	63808399	63827209	15	-0.1719	NEUTRAL	NA	1	NKAIN3
TCGA.AG.A00C.01A	8	63927859	66594561	29	0.2705	NEUTRAL	NA	7	"ARMC1,BHLHE22,CYP7B1,GGH,MTFR1,TTPA,YTHDF3"
TCGA.AA.3941	8	64277502	64606686	72	-0.0542	NEUTRAL	NA	0	None
TCGA.A6.5666	8	64389879	73439069	2395	0.2505	NEUTRAL	NA	35	"ADHFE1,ARFGEF1,ARMC1,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CPA6,CRH,CSPP1,CYP7B1,DNAJC5B,EYA1,LACTB2,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,PDE7A,PPP1R42,PRDM14,PREX2,RRS1,SGK3,SLCO5A1,SULF1,TCF24,TRAM1,TRIM55,TRPA1,VCPIP1,XKR9"
TCGA.AG.3594	8	64618628	64850724	52	0.3227	NEUTRAL	NA	0	None
TCGA.AA.3941	8	64628119	65332916	116	-0.4259	NEUTRAL	NA	0	None
TCGA.AA.3982	8	64633424	65332916	115	0.067	NEUTRAL	NA	0	None
TCGA.AG.3594	8	64869189	68274066	589	0.0041	NEUTRAL	NA	22	"ADHFE1,ARFGEF1,ARMC1,BHLHE22,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CRH,CSPP1,CYP7B1,DNAJC5B,MCMDC2,MTFR1,MYBL1,PDE7A,PPP1R42,RRS1,SGK3,TCF24,TRIM55,VCPIP1"
TCGA.AA.3850	8	65323509	69811302	1050	-0.16745	NEUTRAL	NA	25	"ADHFE1,ARFGEF1,ARMC1,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CPA6,CRH,CSPP1,CYP7B1,DNAJC5B,MCMDC2,MTFR1,MYBL1,PDE7A,PPP1R42,PREX2,RRS1,SGK3,TCF24,TRIM55,VCPIP1"
TCGA.AA.3941	8	65347905	66322488	211	0.1587	NEUTRAL	NA	2	"BHLHE22,CYP7B1"
TCGA.AG.4009.01A	8	65509192	65527583	3	-0.365	NEUTRAL	NA	1	CYP7B1
TCGA.AG.4009.01A	8	65528201	68004022	125	-0.0093	NEUTRAL	NA	20	"ADHFE1,ARMC1,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CRH,CSPP1,CYP7B1,DNAJC5B,MCMDC2,MTFR1,MYBL1,PDE7A,PPP1R42,RRS1,SGK3,TCF24,TRIM55,VCPIP1"
TCGA.AA.A010.01A	8	65528201	68007506	133	0.301	NEUTRAL	NA	20	"ADHFE1,ARMC1,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CRH,CSPP1,CYP7B1,DNAJC5B,MCMDC2,MTFR1,MYBL1,PDE7A,PPP1R42,RRS1,SGK3,TCF24,TRIM55,VCPIP1"
TCGA.A6.2683	8	65770667	146293413	24308	0.2195	NEUTRAL	NA	350	Too-Many
TCGA.AG.A00C.01A	8	66605832	67066240	31	-0.1905	NEUTRAL	NA	4	"DNAJC5B,MTFR1,PDE7A,TRIM55"
TCGA.CK.5914.01A	8	66605832	67067805	32	0.2087	NEUTRAL	NA	4	"DNAJC5B,MTFR1,PDE7A,TRIM55"
TCGA.AG.3909.01A	8	66616917	67067805	31	0.1332	NEUTRAL	NA	4	"DNAJC5B,MTFR1,PDE7A,TRIM55"
TCGA.CA.6718	8	66720825	105317966	10355	0.2572	NEUTRAL	NA	163	Too-Many
TCGA.AG.3896	8	66986776	79728045	3669	0.3526	NEUTRAL	NA	51	"ADHFE1,ARFGEF1,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,COPS5,CPA6,CRH,CRISPLD1,CSPP1,DNAJC5B,EYA1,GDAP1,HNF4G,IL7,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MYBL1,NCOA2,PEX2,PI15,PKIA,PPP1R42,PRDM14,PREX2,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TRAM1,TRIM55,TRPA1,UBE2W,VCPIP1,XKR9,ZC2HC1A,ZFHX4"
TCGA.AG.A00C.01A	8	67067805	68092033	108	0.1845	NEUTRAL	NA	15	"ADHFE1,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CRH,CSPP1,MCMDC2,MYBL1,PPP1R42,RRS1,SGK3,TCF24,TRIM55,VCPIP1"
TCGA.AA.3982	8	67219527	67220640	6	-0.211	NEUTRAL	NA	0	None
TCGA.AA.3509.01A	8	67352315	68131615	119	0.2584	NEUTRAL	NA	13	"ADHFE1,ARFGEF1,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CSPP1,MCMDC2,MYBL1,PPP1R42,SGK3,TCF24,VCPIP1"
TCGA.AA.A00N.01A	8	67364158	67763013	48	0.0292	NEUTRAL	NA	7	"ADHFE1,C8orf44,C8orf44-SGK3,C8orf46,MYBL1,SGK3,VCPIP1"
TCGA.AG.3909.01A	8	67364158	67958000	64	-0.2647	NEUTRAL	NA	11	"ADHFE1,C8orf44,C8orf44-SGK3,C8orf46,COPS5,MCMDC2,MYBL1,PPP1R42,SGK3,TCF24,VCPIP1"
TCGA.CK.5914.01A	8	67380449	67929807	59	-0.274	NEUTRAL	NA	10	"ADHFE1,C8orf44,C8orf44-SGK3,C8orf46,MCMDC2,MYBL1,PPP1R42,SGK3,TCF24,VCPIP1"
TCGA.A6.2677	8	67500230	68302526	42	0.0585	NEUTRAL	NA	11	"ARFGEF1,C8orf44,C8orf44-SGK3,COPS5,CSPP1,MCMDC2,MYBL1,PPP1R42,SGK3,TCF24,VCPIP1"
TCGA.AA.3967.01A	8	67591904	67926628	28	0.1455	NEUTRAL	NA	6	"C8orf44,C8orf44-SGK3,MCMDC2,PPP1R42,SGK3,TCF24"
TCGA.AG.3906.01A	8	67771635	67955423	16	0.3177	NEUTRAL	NA	6	"C8orf44-SGK3,COPS5,MCMDC2,PPP1R42,SGK3,TCF24"
TCGA.AA.A00N.01A	8	67803063	67958000	13	-0.0998	NEUTRAL	NA	4	"COPS5,MCMDC2,PPP1R42,TCF24"
TCGA.AG.A01W.01A	8	67873297	68125971	32	-0.0262	NEUTRAL	NA	5	"ARFGEF1,COPS5,CSPP1,PPP1R42,TCF24"
TCGA.AA.3967.01A	8	67929807	95750566	831	-0.3493	NEUTRAL	NA	99	"ARFGEF1,ATP6V0D2,C8orf34,C8orf59,C8orf87,C8orf88,C8orf89,CA1,CA13,CA2,CA3,CALB1,CDH17,CHMP4C,CNBD1,CNGB3,COPS5,CPA6,CPNE3,CRISPLD1,CSPP1,DCAF4L2,DECR1,DPY19L4,E2F5,ESRP1,EYA1,FABP12,FABP4,FABP5,FABP9,FAM92A1,FSBP,GDAP1,GEM,HEY1,HNF4G,IL7,IMPA1,JPH1,KCNB2,KIAA1429,LACTB2,LRRC69,LRRCC1,LY96,MMP16,MRPS28,MSC,NBN,NCOA2,NECAB1,OSGIN2,OTUD6B,PAG1,PDP1,PEX2,PI15,PKIA,PMP2,PPP1R42,PRDM14,PREX2,PSKH2,RAD54B,RALYL,RBM12B,RDH10,RIPK2,RMDN1,RPL7,RUNX1T1,SBSPON,SLC10A5,SLC26A7,SLC7A13,SLCO5A1,SNX16,STAU2,STMN2,SULF1,TCEB1,TERF1,TMEM55A,TMEM64,TMEM67,TMEM70,TPD52,TRAM1,TRIQK,TRPA1,UBE2W,WWP1,XKR9,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AG.3906.01A	8	67958000	68049709	24	-0.0583	NEUTRAL	NA	2	"COPS5,CSPP1"
TCGA.AG.3891.01A	8	67958000	80677391	379	0.1061	NEUTRAL	NA	39	"ARFGEF1,C8orf34,C8orf89,COPS5,CPA6,CRISPLD1,CSPP1,EYA1,GDAP1,HEY1,HNF4G,IL7,JPH1,KCNB2,LACTB2,LY96,MSC,NCOA2,PEX2,PI15,PKIA,PRDM14,PREX2,RDH10,RPL7,SBSPON,SLCO5A1,STAU2,STMN2,SULF1,TCEB1,TERF1,TMEM70,TRAM1,TRPA1,UBE2W,XKR9,ZC2HC1A,ZFHX4"
TCGA.CK.5914.01A	8	67974037	67998973	6	-0.3942	NEUTRAL	NA	2	"COPS5,CSPP1"
TCGA.AG.3909.01A	8	67998191	68066212	16	-0.0077	NEUTRAL	NA	1	CSPP1
TCGA.CK.5914.01A	8	68004022	68015224	4	-0.0176	NEUTRAL	NA	1	CSPP1
TCGA.AG.4009.01A	8	68005731	68066212	13	-0.2926	NEUTRAL	NA	1	CSPP1
TCGA.AA.A010.01A	8	68015224	68105659	22	-0.431	NEUTRAL	NA	1	CSPP1
TCGA.CK.5914.01A	8	68018079	68061981	9	0.3757	NEUTRAL	NA	1	CSPP1
TCGA.DM.A1HA	8	68041789	146293413	23904	-0.0157	NEUTRAL	NA	332	Too-Many
TCGA.AG.3909.01A	8	68102834	68189476	31	0.0482	NEUTRAL	NA	2	"ARFGEF1,CSPP1"
TCGA.AG.4009.01A	8	68102834	68200148	32	-0.1924	NEUTRAL	NA	2	"ARFGEF1,CSPP1"
TCGA.AG.A00C.01A	8	68102834	68204030	33	-0.1475	NEUTRAL	NA	2	"ARFGEF1,CSPP1"
TCGA.AA.A017.01A	8	68102834	69633592	97	0.347	NEUTRAL	NA	5	"ARFGEF1,C8orf34,CPA6,CSPP1,PREX2"
TCGA.CK.5914.01A	8	68102834	70516996	111	0.2226	NEUTRAL	NA	6	"ARFGEF1,C8orf34,CPA6,CSPP1,PREX2,SULF1"
TCGA.AG.3906.01A	8	68102834	73981991	231	-0.0554	NEUTRAL	NA	18	"ARFGEF1,C8orf34,CPA6,CSPP1,EYA1,KCNB2,LACTB2,MSC,NCOA2,PRDM14,PREX2,SBSPON,SLCO5A1,SULF1,TERF1,TRAM1,TRPA1,XKR9"
TCGA.AA.A010.01A	8	68107570	68189476	29	0.1293	NEUTRAL	NA	2	"ARFGEF1,CSPP1"
TCGA.DM.A28M.01A	8	68150531	100133353	1007	-0.0484	NEUTRAL	NA	121	Too-Many
TCGA.AG.3909.01A	8	68200148	68255392	7	-0.4746	NEUTRAL	NA	1	ARFGEF1
TCGA.AG.A00C.01A	8	68208638	68340238	7	0.3032	NEUTRAL	NA	2	"ARFGEF1,CPA6"
TCGA.AG.A008.01A	8	68255392	146279416	2762	0.0816	NEUTRAL	NA	331	Too-Many
TCGA.AG.3909.01A	8	68334712	70516996	72	0.1083	NEUTRAL	NA	4	"C8orf34,CPA6,PREX2,SULF1"
TCGA.AG.4009.01A	8	68334712	70617319	86	0.1562	NEUTRAL	NA	5	"C8orf34,CPA6,PREX2,SLCO5A1,SULF1"
TCGA.AA.A010.01A	8	68334712	73979529	192	0.1077	NEUTRAL	NA	16	"C8orf34,CPA6,EYA1,KCNB2,LACTB2,MSC,NCOA2,PRDM14,PREX2,SBSPON,SLCO5A1,SULF1,TERF1,TRAM1,TRPA1,XKR9"
TCGA.AG.A00C.01A	8	68346222	86158000	416	-0.0828	NEUTRAL	NA	56	"C8orf34,C8orf59,C8orf89,CA13,CHMP4C,CPA6,CRISPLD1,E2F5,EYA1,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,KCNB2,LACTB2,LRRCC1,LY96,MRPS28,MSC,NCOA2,PAG1,PEX2,PI15,PKIA,PMP2,PRDM14,PREX2,RALYL,RDH10,RPL7,SBSPON,SLC10A5,SLCO5A1,SNX16,STAU2,STMN2,SULF1,TCEB1,TERF1,TMEM70,TPD52,TRAM1,TRPA1,UBE2W,XKR9,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AA.3941	8	68658126	68679832	21	0.2243	NEUTRAL	NA	1	CPA6
TCGA.AA.3941	8	68690039	68921627	78	0.288	NEUTRAL	NA	1	PREX2
TCGA.AA.3941	8	68922985	68951203	8	-0.4815	NEUTRAL	NA	1	PREX2
TCGA.AA.3941	8	68962960	69540611	189	0.129	NEUTRAL	NA	2	"C8orf34,PREX2"
TCGA.AA.3982	8	69084915	70012190	307	0.2733	NEUTRAL	NA	2	"C8orf34,PREX2"
TCGA.AA.3941	8	69542671	70200597	239	-0.3443	NEUTRAL	NA	1	C8orf34
TCGA.AA.A017.01A	8	69688558	75924616	187	0.0271	NEUTRAL	NA	26	"C8orf34,C8orf89,CRISPLD1,EYA1,GDAP1,JPH1,KCNB2,LACTB2,LY96,MSC,NCOA2,PI15,PRDM14,RDH10,RPL7,SBSPON,SLCO5A1,STAU2,SULF1,TCEB1,TERF1,TMEM70,TRAM1,TRPA1,UBE2W,XKR9"
TCGA.AF.2692	8	69699148	134627421	19466	0.1347	NEUTRAL	NA	228	Too-Many
TCGA.AA.3850	8	69843087	69868468	13	-0.01055	NEUTRAL	NA	0	None
TCGA.AF.3913	8	69880185	69894553	4	-0.3344	NEUTRAL	NA	0	None
TCGA.AA.3982	8	70020525	70077343	24	0.3491	NEUTRAL	NA	0	None
TCGA.AA.3844	8	70089436	70825983	257	-0.1272	NEUTRAL	NA	2	"SLCO5A1,SULF1"
TCGA.CA.6715	8	70174475	70522118	138	-0.0897	NEUTRAL	NA	1	SULF1
TCGA.AA.3850	8	70190311	71923240	432	0.13585	NEUTRAL	NA	7	"LACTB2,NCOA2,PRDM14,SLCO5A1,SULF1,TRAM1,XKR9"
TCGA.AA.3941	8	70201172	76638575	2086	0.3043	NEUTRAL	NA	26	"C8orf89,CRISPLD1,EYA1,GDAP1,HNF4G,JPH1,KCNB2,LACTB2,LY96,MSC,NCOA2,PI15,PRDM14,RDH10,RPL7,SBSPON,SLCO5A1,STAU2,SULF1,TCEB1,TERF1,TMEM70,TRAM1,TRPA1,UBE2W,XKR9"
TCGA.AA.3982	8	70434863	70436241	3	-0.2492	NEUTRAL	NA	1	SULF1
TCGA.AA.A00F.01A	8	70515772	70552962	10	0.2949	NEUTRAL	NA	1	SULF1
TCGA.AA.A01Q.01A	8	70541700	72755833	54	0.0448	NEUTRAL	NA	9	"EYA1,LACTB2,MSC,NCOA2,PRDM14,SLCO5A1,SULF1,TRAM1,XKR9"
TCGA.AG.3909.01A	8	70550724	70673951	11	-0.157	NEUTRAL	NA	2	"SLCO5A1,SULF1"
TCGA.A6.3808.01A	8	70550724	86038885	321	0.297	NEUTRAL	NA	50	"C8orf89,CHMP4C,CRISPLD1,EYA1,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,KCNB2,LACTB2,LRRCC1,LY96,MRPS28,MSC,NCOA2,PAG1,PEX2,PI15,PKIA,PMP2,PRDM14,RALYL,RDH10,RPL7,SBSPON,SLC10A5,SLCO5A1,SNX16,STAU2,STMN2,SULF1,TCEB1,TERF1,TMEM70,TPD52,TRAM1,TRPA1,UBE2W,XKR9,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AG.3594	8	70552857	98715069	7568	-0.0067	NEUTRAL	NA	106	Too-Many
TCGA.CK.5914.01A	8	70552962	70673951	10	-0.0371	NEUTRAL	NA	2	"SLCO5A1,SULF1"
TCGA.AA.A00F.01A	8	70570659	86158000	251	-0.0076	NEUTRAL	NA	53	"C8orf59,C8orf89,CA13,CHMP4C,CRISPLD1,E2F5,EYA1,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,KCNB2,LACTB2,LRRCC1,LY96,MRPS28,MSC,NCOA2,PAG1,PEX2,PI15,PKIA,PMP2,PRDM14,RALYL,RDH10,RPL7,SBSPON,SLC10A5,SLCO5A1,SNX16,STAU2,STMN2,SULF1,TCEB1,TERF1,TMEM70,TPD52,TRAM1,TRPA1,UBE2W,XKR9,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.NH.A8F8	8	70573315	138860049	20917	0.3646	NEUTRAL	NA	228	Too-Many
TCGA.AG.4009.01A	8	70650244	71556293	43	-0.2611	NEUTRAL	NA	5	"LACTB2,NCOA2,PRDM14,SLCO5A1,TRAM1"
TCGA.AA.3844	8	70828272	70976652	41	0.295	NEUTRAL	NA	1	PRDM14
TCGA.AA.3844	8	70978194	75307830	1460	-0.1685	NEUTRAL	NA	21	"C8orf89,EYA1,GDAP1,JPH1,KCNB2,LACTB2,LY96,MSC,NCOA2,PRDM14,RDH10,RPL7,SBSPON,STAU2,TCEB1,TERF1,TMEM70,TRAM1,TRPA1,UBE2W,XKR9"
TCGA.CK.5914.01A	8	71025781	71128837	21	0.2303	NEUTRAL	NA	1	NCOA2
TCGA.AG.3909.01A	8	71025781	73993204	100	-0.1823	NEUTRAL	NA	10	"EYA1,KCNB2,LACTB2,MSC,NCOA2,SBSPON,TERF1,TRAM1,TRPA1,XKR9"
TCGA.AA.3867	8	71049689	71071694	4	-0.1612	NEUTRAL	NA	1	NCOA2
TCGA.AA.3867	8	71073671	72712372	459	0.3729	NEUTRAL	NA	5	"EYA1,LACTB2,NCOA2,TRAM1,XKR9"
TCGA.AG.3890	8	71139575	146293413	22854	0.1866	NEUTRAL	NA	324	Too-Many
TCGA.AA.3982	8	71484745	71517400	5	-0.1166	NEUTRAL	NA	1	TRAM1
TCGA.CK.5914.01A	8	71487112	71573918	15	-0.4169	NEUTRAL	NA	2	"LACTB2,TRAM1"
TCGA.AA.A00N.01A	8	71487112	74005047	79	-0.0885	NEUTRAL	NA	9	"EYA1,KCNB2,LACTB2,MSC,SBSPON,TERF1,TRAM1,TRPA1,XKR9"
TCGA.AG.4009.01A	8	71569943	74005047	67	0.2667	NEUTRAL	NA	8	"EYA1,KCNB2,LACTB2,MSC,SBSPON,TERF1,TRPA1,XKR9"
TCGA.CK.5914.01A	8	71581183	74005047	64	0.1741	NEUTRAL	NA	8	"EYA1,KCNB2,LACTB2,MSC,SBSPON,TERF1,TRPA1,XKR9"
TCGA.AA.3850	8	71923561	73862653	784	-0.28735	NEUTRAL	NA	4	"EYA1,KCNB2,MSC,TRPA1"
TCGA.AA.3867	8	72713610	72714902	6	-0.1439	NEUTRAL	NA	0	None
TCGA.AA.A01Q.01A	8	72935120	72983898	25	-0.354	NEUTRAL	NA	1	TRPA1
TCGA.AA.A01Q.01A	8	72987512	124195050	1335	0.0806	NEUTRAL	NA	178	Too-Many
TCGA.AG.3726	8	73155430	73161143	8	-0.4612	NEUTRAL	NA	0	None
TCGA.F5.6813	8	73162268	77087793	1248	0.2644	NEUTRAL	NA	16	"C8orf89,CRISPLD1,GDAP1,HNF4G,JPH1,KCNB2,LY96,PI15,RDH10,RPL7,SBSPON,STAU2,TCEB1,TERF1,TMEM70,UBE2W"
TCGA.AA.3850	8	73862900	74371465	216	0.32935	NEUTRAL	NA	6	"C8orf89,RDH10,RPL7,SBSPON,STAU2,TERF1"
TCGA.CK.4948.01B	8	74005047	74204872	6	0.0568	NEUTRAL	NA	3	"C8orf89,RPL7,SBSPON"
TCGA.AA.A00N.01A	8	74207513	86019484	197	0.2388	NEUTRAL	NA	35	"CHMP4C,CRISPLD1,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,LRRCC1,LY96,MRPS28,PAG1,PEX2,PI15,PKIA,PMP2,RALYL,RDH10,SLC10A5,SNX16,STAU2,STMN2,TCEB1,TMEM70,TPD52,UBE2W,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.CK.5914.01A	8	74207513	86019484	199	0.0625	NEUTRAL	NA	35	"CHMP4C,CRISPLD1,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,LRRCC1,LY96,MRPS28,PAG1,PEX2,PI15,PKIA,PMP2,RALYL,RDH10,SLC10A5,SNX16,STAU2,STMN2,TCEB1,TMEM70,TPD52,UBE2W,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AA.3841	8	74216524	96247267	5445	0.2699	NEUTRAL	NA	82	"ATP6V0D2,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CCNE2,CDH17,CHMP4C,CNBD1,CNGB3,CPNE3,CRISPLD1,DCAF4L2,DECR1,DPY19L4,E2F5,ESRP1,FABP12,FABP4,FABP5,FABP9,FAM92A1,FSBP,GDAP1,GEM,HEY1,HNF4G,IL7,IMPA1,INTS8,JPH1,KIAA1429,LRRC69,LRRCC1,LY96,MMP16,MRPS28,NBN,NDUFAF6,NECAB1,OSGIN2,OTUD6B,PAG1,PDP1,PEX2,PI15,PKIA,PLEKHF2,PMP2,PSKH2,RAD54B,RALYL,RBM12B,RDH10,RIPK2,RMDN1,RUNX1T1,SLC10A5,SLC26A7,SLC7A13,SNX16,STAU2,STMN2,TCEB1,TMEM55A,TMEM64,TMEM67,TMEM70,TP53INP1,TPD52,TRIQK,UBE2W,WWP1,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AG.3909.01A	8	74231292	81430601	120	-0.1359	NEUTRAL	NA	21	"CRISPLD1,GDAP1,HEY1,HNF4G,IL7,JPH1,LY96,MRPS28,PEX2,PI15,PKIA,RDH10,STAU2,STMN2,TCEB1,TMEM70,TPD52,UBE2W,ZBTB10,ZC2HC1A,ZFHX4"
TCGA.AG.4009.01A	8	74231292	87241820	256	0.1302	NEUTRAL	NA	44	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CHMP4C,CRISPLD1,E2F5,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,LRRCC1,LY96,MRPS28,PAG1,PEX2,PI15,PKIA,PMP2,PSKH2,RALYL,RDH10,SLC10A5,SLC7A13,SNX16,STAU2,STMN2,TCEB1,TMEM70,TPD52,UBE2W,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AG.3906.01A	8	74234877	74600848	10	-0.1309	NEUTRAL	NA	2	"RDH10,STAU2"
TCGA.AG.3893	8	74348655	74548276	72	-0.494	NEUTRAL	NA	1	STAU2
TCGA.AA.3850	8	74371962	74403363	23	-0.50515	NEUTRAL	NA	1	STAU2
TCGA.AA.3982	8	74372760	74392489	10	0.2849	NEUTRAL	NA	1	STAU2
TCGA.AG.A01W.01A	8	74393838	97381091	684	0.3766	NEUTRAL	NA	86	"ATP6V0D2,C8orf37,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CCNE2,CDH17,CHMP4C,CNBD1,CNGB3,CPNE3,CRISPLD1,DCAF4L2,DECR1,DPY19L4,E2F5,ESRP1,FABP12,FABP4,FABP5,FABP9,FAM92A1,FSBP,GDAP1,GDF6,GEM,HEY1,HNF4G,IL7,IMPA1,INTS8,JPH1,KIAA1429,LRRC69,LRRCC1,LY96,MMP16,MRPS28,MTERF3,NBN,NDUFAF6,NECAB1,OSGIN2,OTUD6B,PAG1,PDP1,PEX2,PI15,PKIA,PLEKHF2,PMP2,PSKH2,PTDSS1,RAD54B,RALYL,RBM12B,RIPK2,RMDN1,RUNX1T1,SLC10A5,SLC26A7,SLC7A13,SNX16,STAU2,STMN2,TCEB1,TMEM55A,TMEM64,TMEM67,TMEM70,TP53INP1,TPD52,TRIQK,UBE2W,UQCRB,WWP1,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AA.3982	8	74403363	74419278	7	-0.1229	NEUTRAL	NA	1	STAU2
TCGA.AA.3850	8	74419278	75242731	252	0.08735	NEUTRAL	NA	6	"JPH1,LY96,STAU2,TCEB1,TMEM70,UBE2W"
TCGA.AA.A010.01A	8	74464251	74858848	18	-0.0088	NEUTRAL	NA	3	"STAU2,TCEB1,UBE2W"
TCGA.AG.3893	8	74555281	93695854	4573	-0.0052	NEUTRAL	NA	63	"ATP6V0D2,C8orf59,C8orf88,CA1,CA13,CA2,CA3,CALB1,CHMP4C,CNBD1,CNGB3,CPNE3,CRISPLD1,DCAF4L2,DECR1,E2F5,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,LRRC69,LRRCC1,LY96,MMP16,MRPS28,NBN,NECAB1,OSGIN2,OTUD6B,PAG1,PEX2,PI15,PKIA,PMP2,PSKH2,RALYL,RIPK2,RMDN1,RUNX1T1,SLC10A5,SLC26A7,SLC7A13,SNX16,STAU2,STMN2,TCEB1,TMEM55A,TMEM64,TMEM70,TPD52,UBE2W,WWP1,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AA.A010.01A	8	74938949	80576978	76	-0.0209	NEUTRAL	NA	12	"CRISPLD1,GDAP1,HNF4G,IL7,JPH1,LY96,PEX2,PI15,PKIA,STMN2,ZC2HC1A,ZFHX4"
TCGA.AG.3906.01A	8	74941144	80677391	72	-0.1301	NEUTRAL	NA	13	"CRISPLD1,GDAP1,HEY1,HNF4G,IL7,JPH1,LY96,PEX2,PI15,PKIA,STMN2,ZC2HC1A,ZFHX4"
TCGA.A6.2677	8	75076275	75630345	191	0.1287	NEUTRAL	NA	2	"GDAP1,JPH1"
TCGA.AA.3850	8	75249565	75523287	74	-0.48155	NEUTRAL	NA	1	GDAP1
TCGA.AA.3811	8	75332822	80402238	1265	-0.1679	NEUTRAL	NA	8	"CRISPLD1,HNF4G,IL7,PEX2,PI15,PKIA,ZC2HC1A,ZFHX4"
TCGA.AA.3982	8	75332822	80404795	1269	0.2137	NEUTRAL	NA	8	"CRISPLD1,HNF4G,IL7,PEX2,PI15,PKIA,ZC2HC1A,ZFHX4"
TCGA.AA.3850	8	75539051	75579464	21	0.08045	NEUTRAL	NA	0	None
TCGA.CM.5348	8	75993644	76058955	22	-0.2375	NEUTRAL	NA	0	None
TCGA.CM.6163	8	76032961	143844649	20879	0.009	NEUTRAL	NA	225	Too-Many
TCGA.AA.3850	8	76277897	76440917	52	0.08045	NEUTRAL	NA	0	None
TCGA.4T.AA8H	8	76542559	76955520	108	-0.012	NEUTRAL	NA	0	None
TCGA.A6.6650	8	76590541	146293413	19362	0.3067	NEUTRAL	NA	301	Too-Many
TCGA.AY.A8YK	8	76620993	77067621	110	0.2376	NEUTRAL	NA	0	None
TCGA.AA.3867	8	76638575	79573544	696	0.2706	NEUTRAL	NA	3	"PEX2,PKIA,ZFHX4"
TCGA.AA.3941	8	76641491	80398162	898	-0.4046	NEUTRAL	NA	5	"IL7,PEX2,PKIA,ZC2HC1A,ZFHX4"
TCGA.F5.6813	8	77088273	77529465	113	-0.1454	NEUTRAL	NA	0	None
TCGA.A6.5666	8	77111980	79248159	544	0.207	NEUTRAL	NA	2	"PEX2,ZFHX4"
TCGA.QG.A5Z1	8	77426901	77953790	126	-0.0562	NEUTRAL	NA	2	"PEX2,ZFHX4"
TCGA.AA.A01K.01A	8	77765675	99054841	611	0.2928	NEUTRAL	NA	83	"ATP6V0D2,C8orf37,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CCNE2,CDH17,CHMP4C,CNBD1,CNGB3,CPNE3,CPQ,DCAF4L2,DECR1,DPY19L4,E2F5,ESRP1,FABP12,FABP4,FABP5,FABP9,FAM92A1,FSBP,GDF6,GEM,HEY1,IL7,IMPA1,INTS8,KIAA1429,LAPTM4B,LRRC69,LRRCC1,MATN2,MMP16,MRPS28,MTDH,MTERF3,NBN,NDUFAF6,NECAB1,OSGIN2,OTUD6B,PAG1,PDP1,PEX2,PKIA,PLEKHF2,PMP2,PSKH2,PTDSS1,RAD54B,RALYL,RBM12B,RIPK2,RMDN1,RPL30,RUNX1T1,SDC2,SLC10A5,SLC26A7,SLC7A13,SNX16,STMN2,TMEM55A,TMEM64,TMEM67,TP53INP1,TPD52,TRIQK,TSPYL5,UQCRB,WWP1,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.DM.A1DB	8	77844518	79270832	363	-0.1045	NEUTRAL	NA	1	PEX2
TCGA.F5.6813	8	77921713	83146786	1294	0.0069	NEUTRAL	NA	20	"CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,MRPS28,PAG1,PKIA,PMP2,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZNF704"
TCGA.AF.3913	8	78125777	78126837	5	-0.4313	NEUTRAL	NA	0	None
TCGA.QG.A5Z1	8	78271296	84924803	1622	0.0163	NEUTRAL	NA	20	"CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,MRPS28,PAG1,PKIA,PMP2,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZNF704"
TCGA.AA.3872	8	78451619	78928137	129	0.1544	NEUTRAL	NA	0	None
TCGA.AA.3872	8	78939876	95443805	3885	0.2756	NEUTRAL	NA	61	"ATP6V0D2,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CDH17,CHMP4C,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,FABP12,FABP4,FABP5,FABP9,FAM92A1,FSBP,GEM,HEY1,IL7,IMPA1,LRRC69,LRRCC1,MMP16,MRPS28,NBN,NECAB1,OSGIN2,OTUD6B,PAG1,PDP1,PKIA,PMP2,PSKH2,RAD54B,RALYL,RBM12B,RIPK2,RMDN1,RUNX1T1,SLC10A5,SLC26A7,SLC7A13,SNX16,STMN2,TMEM55A,TMEM64,TMEM67,TPD52,TRIQK,WWP1,ZBTB10,ZC2HC1A,ZFAND1,ZNF704"
TCGA.AA.3811	8	80402268	82729673	614	0.2722	NEUTRAL	NA	17	"CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IMPA1,MRPS28,PAG1,PMP2,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZFAND1,ZNF704"
TCGA.AA.3844	8	80431799	82710136	609	-0.055	NEUTRAL	NA	16	"CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IMPA1,MRPS28,PAG1,PMP2,SLC10A5,STMN2,TPD52,ZBTB10,ZFAND1,ZNF704"
TCGA.AA.3850	8	80485477	82260482	492	0.12425	NEUTRAL	NA	8	"FABP5,HEY1,MRPS28,PAG1,STMN2,TPD52,ZBTB10,ZNF704"
TCGA.AG.3891.01A	8	80679756	95888238	488	0.1743	NEUTRAL	NA	61	"ATP6V0D2,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CDH17,CHMP4C,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,DPY19L4,E2F5,ESRP1,FABP12,FABP4,FABP5,FABP9,FAM92A1,FSBP,GEM,HEY1,IMPA1,INTS8,KIAA1429,LRRC69,LRRCC1,MMP16,MRPS28,NBN,NECAB1,OSGIN2,OTUD6B,PAG1,PDP1,PMP2,PSKH2,RAD54B,RALYL,RBM12B,RIPK2,RMDN1,RUNX1T1,SLC10A5,SLC26A7,SLC7A13,SNX16,TMEM55A,TMEM64,TMEM67,TPD52,TRIQK,WWP1,ZBTB10,ZFAND1,ZNF704"
TCGA.AA.A010.01A	8	80831173	80992513	11	0.1637	NEUTRAL	NA	2	"MRPS28,TPD52"
TCGA.AG.3906.01A	8	80831173	87414216	157	-0.0472	NEUTRAL	NA	27	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CHMP4C,E2F5,FABP12,FABP4,FABP5,FABP9,IMPA1,LRRCC1,MRPS28,PAG1,PMP2,PSKH2,RALYL,SLC10A5,SLC7A13,SNX16,TPD52,WWP1,ZBTB10,ZFAND1,ZNF704"
TCGA.G4.6311	8	81107010	92688277	2679	0.1979	NEUTRAL	NA	43	"ATP6V0D2,C8orf59,C8orf88,CA1,CA13,CA2,CA3,CALB1,CHMP4C,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,FABP12,FABP4,FABP5,FABP9,IMPA1,LRRC69,LRRCC1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PAG1,PMP2,PSKH2,RALYL,RIPK2,RMDN1,SLC10A5,SLC26A7,SLC7A13,SNX16,TMEM55A,TMEM64,WWP1,ZBTB10,ZFAND1,ZNF704"
TCGA.AA.A010.01A	8	81553554	87410540	144	0.1048	NEUTRAL	NA	24	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CHMP4C,E2F5,FABP12,FABP4,FABP5,FABP9,IMPA1,LRRCC1,PAG1,PMP2,PSKH2,RALYL,SLC10A5,SLC7A13,SNX16,WWP1,ZFAND1,ZNF704"
TCGA.AA.3941	8	82277027	94396447	2752	-0.1304	NEUTRAL	NA	42	"ATP6V0D2,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CHMP4C,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,FABP12,FABP4,FABP9,IMPA1,LRRC69,LRRCC1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PMP2,PSKH2,RALYL,RIPK2,RMDN1,RUNX1T1,SLC10A5,SLC26A7,SLC7A13,SNX16,TMEM55A,TMEM64,TRIQK,WWP1,ZFAND1"
TCGA.AA.3982	8	82353502	83872987	371	0.3035	NEUTRAL	NA	9	"CHMP4C,FABP12,FABP4,FABP9,IMPA1,PMP2,SLC10A5,SNX16,ZFAND1"
TCGA.AA.3867	8	82354155	85694504	774	0.3347	NEUTRAL	NA	10	"CHMP4C,FABP12,FABP4,FABP9,IMPA1,PMP2,RALYL,SLC10A5,SNX16,ZFAND1"
TCGA.AG.3909.01A	8	82355572	82395269	11	0.0805	NEUTRAL	NA	3	"FABP4,FABP9,PMP2"
TCGA.AG.4015	8	82370671	83588607	280	0.0163	NEUTRAL	NA	8	"CHMP4C,FABP12,FABP4,FABP9,IMPA1,SLC10A5,SNX16,ZFAND1"
TCGA.AG.3909.01A	8	82644815	86019484	20	-0.2337	NEUTRAL	NA	4	"CHMP4C,LRRCC1,RALYL,SNX16"
TCGA.AA.3844	8	82729673	94247151	2587	-0.4809	NEUTRAL	NA	34	"ATP6V0D2,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,LRRC69,LRRCC1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PSKH2,RALYL,RIPK2,RMDN1,RUNX1T1,SLC26A7,SLC7A13,SNX16,TMEM55A,TMEM64,TRIQK,WWP1"
TCGA.DM.A282.01A	8	82735975	146279416	2667	0.001	NEUTRAL	NA	280	Too-Many
TCGA.AA.3811	8	82736925	94392268	2638	-0.1335	NEUTRAL	NA	34	"ATP6V0D2,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,LRRC69,LRRCC1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PSKH2,RALYL,RIPK2,RMDN1,RUNX1T1,SLC26A7,SLC7A13,SNX16,TMEM55A,TMEM64,TRIQK,WWP1"
TCGA.AZ.4682	8	82800295	90377864	1711	-0.2196	NEUTRAL	NA	18	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CNBD1,CNGB3,CPNE3,DCAF4L2,E2F5,LRRCC1,MMP16,PSKH2,RALYL,RMDN1,SLC7A13,WWP1"
TCGA.A6.5666	8	82889889	93317016	2347	0.2518	NEUTRAL	NA	31	"ATP6V0D2,C8orf59,C8orf88,CA1,CA13,CA2,CA3,CALB1,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,LRRC69,LRRCC1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PSKH2,RALYL,RIPK2,RMDN1,RUNX1T1,SLC26A7,SLC7A13,TMEM55A,TMEM64,WWP1"
TCGA.AG.3896	8	82927768	141838359	18682	0.3501	NEUTRAL	NA	188	Too-Many
TCGA.AG.4015	8	83597645	96189054	2944	0.3213	NEUTRAL	NA	49	"ATP6V0D2,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CCNE2,CDH17,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,DPY19L4,E2F5,ESRP1,FAM92A1,FSBP,GEM,INTS8,KIAA1429,LRRC69,LRRCC1,MMP16,NBN,NDUFAF6,NECAB1,OSGIN2,OTUD6B,PDP1,PLEKHF2,PSKH2,RAD54B,RALYL,RBM12B,RIPK2,RMDN1,RUNX1T1,SLC26A7,SLC7A13,TMEM55A,TMEM64,TMEM67,TP53INP1,TRIQK,WWP1"
TCGA.AY.A8YK	8	83888760	84101125	58	0.0586	NEUTRAL	NA	0	None
TCGA.AA.3982	8	83903813	84265363	88	0.1084	NEUTRAL	NA	0	None
TCGA.AD.6901	8	83955760	88309813	931	0.1542	NEUTRAL	NA	16	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CNBD1,CNGB3,CPNE3,E2F5,LRRCC1,PSKH2,RALYL,RMDN1,SLC7A13,WWP1"
TCGA.A6.3807	8	84226858	86039141	379	0.0999	NEUTRAL	NA	2	"LRRCC1,RALYL"
TCGA.AA.3982	8	84284245	84478961	32	0.0433	NEUTRAL	NA	0	None
TCGA.AA.3982	8	84506942	85803972	305	0.1649	NEUTRAL	NA	1	RALYL
TCGA.AY.A8YK	8	84756132	85032003	75	0.0921	NEUTRAL	NA	0	None
TCGA.EI.6881	8	84979052	146293413	19017	0.0176	NEUTRAL	NA	279	Too-Many
TCGA.AA.3666	8	85033570	141663971	18198	-0.0409	NEUTRAL	NA	187	Too-Many
TCGA.AF.2693	8	85854858	87163760	195	-0.4272	NEUTRAL	NA	9	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,E2F5,LRRCC1,PSKH2"
TCGA.AA.A00N.01A	8	86035607	86043968	6	-0.4038	NEUTRAL	NA	1	LRRCC1
TCGA.A6.3807	8	86052242	90318846	950	-0.2498	NEUTRAL	NA	17	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CNBD1,CNGB3,CPNE3,DCAF4L2,E2F5,LRRCC1,MMP16,PSKH2,RMDN1,SLC7A13,WWP1"
TCGA.AA.A00N.01A	8	86089629	86158000	12	0.0847	NEUTRAL	NA	3	"C8orf59,CA13,E2F5"
TCGA.AG.3909.01A	8	86114360	86158000	11	-0.211	NEUTRAL	NA	3	"C8orf59,CA13,E2F5"
TCGA.CK.5914.01A	8	86114360	87241820	52	0.0311	NEUTRAL	NA	9	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,E2F5,PSKH2,SLC7A13"
TCGA.A6.3808.01A	8	86114360	87570468	96	0.1607	NEUTRAL	NA	12	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CPNE3,E2F5,PSKH2,RMDN1,SLC7A13,WWP1"
TCGA.AG.3909.01A	8	86240752	86253750	7	0.206	NEUTRAL	NA	1	CA1
TCGA.AA.A00F.01A	8	86240752	86360211	14	-0.3146	NEUTRAL	NA	2	"CA1,CA3"
TCGA.AG.A00C.01A	8	86240752	87241820	34	-0.1081	NEUTRAL	NA	6	"ATP6V0D2,CA1,CA2,CA3,PSKH2,SLC7A13"
TCGA.AA.A00F.01A	8	86377453	87081614	9	0.1098	NEUTRAL	NA	2	"CA2,PSKH2"
TCGA.AF.3913	8	86464641	115891625	7775	0.3722	NEUTRAL	NA	105	Too-Many
TCGA.CA.5797	8	86946822	91001350	1047	0.0766	NEUTRAL	NA	13	"ATP6V0D2,CNBD1,CNGB3,CPNE3,DCAF4L2,MMP16,NBN,OSGIN2,PSKH2,RIPK2,RMDN1,SLC7A13,WWP1"
TCGA.AG.3909.01A	8	87081614	87241820	13	0.3202	NEUTRAL	NA	3	"ATP6V0D2,PSKH2,SLC7A13"
TCGA.AA.A00F.01A	8	87111191	87241820	12	-0.1819	NEUTRAL	NA	2	"ATP6V0D2,SLC7A13"
TCGA.AF.2693	8	87167183	141594880	17802	0.0094	NEUTRAL	NA	177	Too-Many
TCGA.AA.A00F.01A	8	87386237	87454811	13	0.3089	NEUTRAL	NA	1	WWP1
TCGA.CK.5914.01A	8	87447668	87479010	9	0.1827	NEUTRAL	NA	1	WWP1
TCGA.AG.A00C.01A	8	87450807	92033436	141	-0.0634	NEUTRAL	NA	16	"C8orf88,CALB1,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,MMP16,NBN,NECAB1,OSGIN2,RIPK2,RMDN1,TMEM55A,TMEM64,WWP1"
TCGA.AG.3906.01A	8	87450807	94828564	208	-0.0323	NEUTRAL	NA	25	"C8orf87,C8orf88,CALB1,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,FAM92A1,LRRC69,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,RBM12B,RIPK2,RMDN1,RUNX1T1,SLC26A7,TMEM55A,TMEM64,TMEM67,TRIQK,WWP1"
TCGA.AG.3909.01A	8	87454811	87479010	7	-0.3074	NEUTRAL	NA	1	WWP1
TCGA.AG.4009.01A	8	87454811	90802267	81	0.2601	NEUTRAL	NA	8	"CNBD1,CNGB3,CPNE3,DCAF4L2,MMP16,RIPK2,RMDN1,WWP1"
TCGA.AA.A00F.01A	8	87460345	87487010	8	-0.143	NEUTRAL	NA	2	"RMDN1,WWP1"
TCGA.AA.A010.01A	8	87460345	90914947	83	0.0209	NEUTRAL	NA	9	"CNBD1,CNGB3,CPNE3,DCAF4L2,MMP16,OSGIN2,RIPK2,RMDN1,WWP1"
TCGA.AA.A00F.01A	8	87489450	87559868	17	0.1912	NEUTRAL	NA	2	"CPNE3,RMDN1"
TCGA.CK.5914.01A	8	87520684	90983373	84	0.1326	NEUTRAL	NA	9	"CNBD1,CNGB3,CPNE3,DCAF4L2,MMP16,NBN,OSGIN2,RIPK2,RMDN1"
TCGA.AG.3909.01A	8	87558796	90982575	73	-0.0426	NEUTRAL	NA	8	"CNBD1,CNGB3,CPNE3,DCAF4L2,MMP16,NBN,OSGIN2,RIPK2"
TCGA.AA.A00F.01A	8	87560498	94827521	153	-0.1409	NEUTRAL	NA	23	"C8orf87,C8orf88,CALB1,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,FAM92A1,LRRC69,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,RBM12B,RIPK2,RUNX1T1,SLC26A7,TMEM55A,TMEM64,TMEM67,TRIQK"
TCGA.AA.3982	8	87638452	90648727	750	0.174	NEUTRAL	NA	4	"CNBD1,CNGB3,DCAF4L2,MMP16"
TCGA.AA.A00L.01A	8	87683134	92114842	83	-0.0798	NEUTRAL	NA	14	"C8orf88,CALB1,CNBD1,CNGB3,DCAF4L2,DECR1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,RIPK2,TMEM55A,TMEM64"
TCGA.AD.6901	8	88341349	117307109	7759	-0.2476	NEUTRAL	NA	99	"ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,C8orf87,C8orf88,CALB1,CCNE2,CDH17,CNBD1,COX6C,CPQ,CSMD3,CTHRC1,DCAF13,DCAF4L2,DCSTAMP,DECR1,DPY19L4,DPYS,EBAG9,EIF3E,EMC2,ENY2,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,FZD6,GDF6,GEM,GRHL2,HRSP12,INTS8,KCNS2,KCNV1,KIAA1429,KLF10,LAPTM4B,LRP12,LRRC69,MATN2,MMP16,MTDH,MTERF3,NBN,NCALD,NDUFAF6,NECAB1,NIPAL2,NUDCD1,ODF1,OSGIN2,OSR2,OTUD6B,OXR1,PABPC1,PDP1,PKHD1L1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RIMS2,RIPK2,RNF19A,RPL30,RRM2B,RSPO2,RUNX1T1,SDC2,SLC25A32,SLC26A7,SNX31,SPAG1,STK3,SYBU,TMEM55A,TMEM64,TMEM67,TMEM74,TP53INP1,TRHR,TRIQK,TRPS1,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.F5.6571	8	89663995	89750266	16	0.1141	NEUTRAL	NA	0	None
TCGA.AY.6196	8	89712999	95375940	1419	0.0052	NEUTRAL	NA	21	"C8orf87,C8orf88,CALB1,CDH17,DECR1,FAM92A1,GEM,LRRC69,NBN,NECAB1,OSGIN2,OTUD6B,PDP1,RBM12B,RIPK2,RUNX1T1,SLC26A7,TMEM55A,TMEM64,TMEM67,TRIQK"
TCGA.AY.A8YK	8	89946031	90184575	81	0.1907	NEUTRAL	NA	0	None
TCGA.F5.6813	8	89946031	91783933	526	0.1345	NEUTRAL	NA	6	"CALB1,DECR1,NBN,OSGIN2,RIPK2,TMEM64"
TCGA.AA.3972	8	90121458	90378304	93	-0.4889	NEUTRAL	NA	0	None
TCGA.DC.6682	8	90207443	90404591	68	-0.1872	NEUTRAL	NA	0	None
TCGA.AG.3883	8	90320126	90533174	40	-0.1249	NEUTRAL	NA	0	None
TCGA.AZ.4682	8	90378304	146293413	17876	0.3019	NEUTRAL	NA	261	Too-Many
TCGA.AA.3972	8	90385008	146293413	17870	0.0493	NEUTRAL	NA	261	Too-Many
TCGA.G4.6626	8	90475374	90484474	7	-0.3034	NEUTRAL	NA	0	None
TCGA.AA.3679	8	90484474	90648727	54	-0.0073	NEUTRAL	NA	0	None
TCGA.G4.6626	8	90520648	91397406	262	0.2455	NEUTRAL	NA	5	"CALB1,DECR1,NBN,OSGIN2,RIPK2"
TCGA.AG.3883	8	90537660	146293413	17877	0.2309	NEUTRAL	NA	261	Too-Many
TCGA.EF.5830	8	90562750	90672081	54	0.1679	NEUTRAL	NA	0	None
TCGA.DC.6682	8	90562750	146293413	17838	0.2617	NEUTRAL	NA	261	Too-Many
TCGA.DM.A1D0	8	90575444	90738199	57	0.0358	NEUTRAL	NA	0	None
TCGA.A6.3807	8	90635790	95863359	1250	-0.2431	NEUTRAL	NA	27	"C8orf87,C8orf88,CALB1,CDH17,DECR1,DPY19L4,ESRP1,FAM92A1,FSBP,GEM,INTS8,KIAA1429,LRRC69,NBN,NECAB1,OSGIN2,OTUD6B,PDP1,RAD54B,RBM12B,RIPK2,RUNX1T1,SLC26A7,TMEM55A,TMEM64,TMEM67,TRIQK"
TCGA.AA.3860	8	90672081	146293413	17813	0.0047	NEUTRAL	NA	261	Too-Many
TCGA.A6.5662	8	90715684	90947268	57	-0.0663	NEUTRAL	NA	3	"NBN,OSGIN2,RIPK2"
TCGA.AA.A00N.01A	8	90792256	90933287	10	-0.4126	NEUTRAL	NA	2	"OSGIN2,RIPK2"
TCGA.AG.4009.01A	8	90921783	90933287	4	-0.328	NEUTRAL	NA	1	OSGIN2
TCGA.AG.4009.01A	8	90936738	91094789	32	0.3247	NEUTRAL	NA	4	"CALB1,DECR1,NBN,OSGIN2"
TCGA.AA.A010.01A	8	90947725	90992925	13	-7.00E-04	NEUTRAL	NA	1	NBN
TCGA.AG.A02X.01A	8	90955444	93088137	87	0.2654	NEUTRAL	NA	11	"C8orf88,CALB1,DECR1,LRRC69,NBN,NECAB1,OTUD6B,RUNX1T1,SLC26A7,TMEM55A,TMEM64"
TCGA.AA.3982	8	90993149	94370643	752	0.3287	NEUTRAL	NA	13	"C8orf87,C8orf88,CALB1,DECR1,LRRC69,NBN,NECAB1,OTUD6B,RUNX1T1,SLC26A7,TMEM55A,TMEM64,TRIQK"
TCGA.CK.5914.01A	8	90996675	91057040	8	0.2346	NEUTRAL	NA	2	"DECR1,NBN"
TCGA.AA.A00N.01A	8	90996675	92096998	47	0.3306	NEUTRAL	NA	8	"C8orf88,CALB1,DECR1,NBN,NECAB1,OTUD6B,TMEM55A,TMEM64"
TCGA.AG.3909.01A	8	91013669	91643788	18	-0.0012	NEUTRAL	NA	3	"CALB1,DECR1,TMEM64"
TCGA.AA.A010.01A	8	91029335	91094789	15	-0.0628	NEUTRAL	NA	2	"CALB1,DECR1"
TCGA.CK.5914.01A	8	91063867	91893214	17	-0.4705	NEUTRAL	NA	4	"CALB1,DECR1,NECAB1,TMEM64"
TCGA.F4.6460	8	91188837	102040495	2898	0.1327	NEUTRAL	NA	56	"ANKRD46,C8orf37,C8orf87,C8orf88,CCNE2,CDH17,COX6C,CPQ,DPY19L4,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,GDF6,GEM,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,LRRC69,MATN2,MTDH,MTERF3,NDUFAF6,NECAB1,NIPAL2,OSR2,OTUD6B,PABPC1,PDP1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RNF19A,RPL30,RUNX1T1,SDC2,SLC26A7,SNX31,SPAG1,STK3,TMEM55A,TMEM64,TMEM67,TP53INP1,TRIQK,TSPYL5,UQCRB,VPS13B,YWHAZ"
TCGA.G4.6626	8	91399672	91413592	3	-0.2187	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	8	91637860	92082473	21	-0.0915	NEUTRAL	NA	5	"C8orf88,NECAB1,OTUD6B,TMEM55A,TMEM64"
TCGA.AG.3909.01A	8	91657308	91961977	11	0.3462	NEUTRAL	NA	2	"NECAB1,TMEM64"
TCGA.F5.6813	8	91890169	95863359	927	0.1123	NEUTRAL	NA	21	"C8orf87,C8orf88,CDH17,DPY19L4,ESRP1,FAM92A1,FSBP,GEM,INTS8,KIAA1429,LRRC69,NECAB1,OTUD6B,PDP1,RAD54B,RBM12B,RUNX1T1,SLC26A7,TMEM55A,TMEM67,TRIQK"
TCGA.AG.3909.01A	8	91963309	92096998	16	-0.1902	NEUTRAL	NA	4	"C8orf88,NECAB1,OTUD6B,TMEM55A"
TCGA.AG.A00C.01A	8	92052850	93026758	35	-0.3758	NEUTRAL	NA	5	"LRRC69,OTUD6B,RUNX1T1,SLC26A7,TMEM55A"
TCGA.CK.5914.01A	8	92083316	92212844	13	-0.3971	NEUTRAL	NA	2	"LRRC69,OTUD6B"
TCGA.AG.4009.01A	8	92083316	94828564	67	0.2623	NEUTRAL	NA	9	"C8orf87,FAM92A1,LRRC69,OTUD6B,RBM12B,RUNX1T1,SLC26A7,TMEM67,TRIQK"
TCGA.AA.A010.01A	8	92114842	94828564	73	0.2223	NEUTRAL	NA	8	"C8orf87,FAM92A1,LRRC69,RBM12B,RUNX1T1,SLC26A7,TMEM67,TRIQK"
TCGA.CK.5914.01A	8	92231091	94712802	31	0.2866	NEUTRAL	NA	6	"C8orf87,FAM92A1,LRRC69,RUNX1T1,SLC26A7,TRIQK"
TCGA.A6.2677	8	92247647	101264661	2191	0.2057	NEUTRAL	NA	45	"C8orf37,C8orf87,CCNE2,CDH17,COX6C,CPQ,DPY19L4,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,GDF6,GEM,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PDP1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RPL30,RUNX1T1,SDC2,SLC26A7,SPAG1,STK3,TMEM67,TP53INP1,TRIQK,TSPYL5,UQCRB,VPS13B"
TCGA.G4.6311	8	92733281	93358409	120	0.2389	NEUTRAL	NA	1	RUNX1T1
TCGA.AZ.4684.01A	8	92972453	95177941	60	0.1134	NEUTRAL	NA	8	"C8orf87,CDH17,FAM92A1,PDP1,RBM12B,RUNX1T1,TMEM67,TRIQK"
TCGA.AG.A00C.01A	8	93029407	95565558	96	-0.0247	NEUTRAL	NA	12	"C8orf87,CDH17,FAM92A1,FSBP,GEM,KIAA1429,PDP1,RAD54B,RBM12B,RUNX1T1,TMEM67,TRIQK"
TCGA.AG.3909.01A	8	93074721	94746542	11	-0.4899	NEUTRAL	NA	5	"C8orf87,FAM92A1,RBM12B,RUNX1T1,TRIQK"
TCGA.AA.3862.01A	8	93074721	128752595	1394	-0.0791	NEUTRAL	NA	133	Too-Many
TCGA.AG.3731	8	93358409	93759952	102	0.028	NEUTRAL	NA	0	None
TCGA.G4.6311	8	93390139	93412371	5	-0.4971	NEUTRAL	NA	0	None
TCGA.G4.6311	8	93424324	99958113	2018	0.2376	NEUTRAL	NA	37	"C8orf37,C8orf87,CCNE2,CDH17,CPQ,DPY19L4,ERICH5,ESRP1,FAM92A1,FSBP,GDF6,GEM,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PDP1,PLEKHF2,POP1,PTDSS1,RAD54B,RBM12B,RPL30,SDC2,STK3,TMEM67,TP53INP1,TRIQK,TSPYL5,UQCRB"
TCGA.NH.A50U	8	93436893	94280473	202	-0.5109	NEUTRAL	NA	2	"C8orf87,TRIQK"
TCGA.AA.3844	8	94252212	105525030	3348	-0.0654	NEUTRAL	NA	64	"ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,CCNE2,CDH17,COX6C,CPQ,CTHRC1,DCAF13,DCSTAMP,DPY19L4,DPYS,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,FZD6,GDF6,GEM,GRHL2,HRSP12,INTS8,KCNS2,KIAA1429,KLF10,LAPTM4B,LRP12,MATN2,MTDH,MTERF3,NCALD,NDUFAF6,NIPAL2,ODF1,OSR2,PABPC1,PDP1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RIMS2,RNF19A,RPL30,RRM2B,SDC2,SLC25A32,SNX31,SPAG1,STK3,TMEM67,TP53INP1,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZNF706"
TCGA.NH.A50U	8	94281809	120939657	7751	0.2915	NEUTRAL	NA	97	"AARD,ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,CCNE2,CDH17,COLEC10,COX6C,CPQ,CSMD3,CTHRC1,DCAF13,DCSTAMP,DEPTOR,DPY19L4,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,ERICH5,ESRP1,EXT1,FAM92A1,FBXO43,FSBP,FZD6,GDF6,GEM,GRHL2,HRSP12,INTS8,KCNS2,KCNV1,KIAA1429,KLF10,LAPTM4B,LRP12,MAL2,MATN2,MED30,MTDH,MTERF3,NCALD,NDUFAF6,NIPAL2,NOV,NUDCD1,ODF1,OSR2,OXR1,PABPC1,PDP1,PKHD1L1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD21,RAD54B,RBM12B,RGS22,RIMS2,RNF19A,RPL30,RRM2B,RSPO2,SAMD12,SDC2,SLC25A32,SLC30A8,SNX31,SPAG1,STK3,SYBU,TAF2,TMEM67,TMEM74,TNFRSF11B,TP53INP1,TRHR,TRPS1,TSPYL5,UBR5,UQCRB,UTP23,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AA.3982	8	94375691	94379686	5	-0.2291	NEUTRAL	NA	0	None
TCGA.AA.3811	8	94396402	105525030	3287	0.2705	NEUTRAL	NA	64	"ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,CCNE2,CDH17,COX6C,CPQ,CTHRC1,DCAF13,DCSTAMP,DPY19L4,DPYS,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,FZD6,GDF6,GEM,GRHL2,HRSP12,INTS8,KCNS2,KIAA1429,KLF10,LAPTM4B,LRP12,MATN2,MTDH,MTERF3,NCALD,NDUFAF6,NIPAL2,ODF1,OSR2,PABPC1,PDP1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RIMS2,RNF19A,RPL30,RRM2B,SDC2,SLC25A32,SNX31,SPAG1,STK3,TMEM67,TP53INP1,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZNF706"
TCGA.AA.3850	8	94400283	95397887	296	0.14275	NEUTRAL	NA	7	"CDH17,FAM92A1,GEM,PDP1,RAD54B,RBM12B,TMEM67"
TCGA.CM.5868	8	94426832	95696850	356	-0.265	NEUTRAL	NA	10	"CDH17,ESRP1,FAM92A1,FSBP,GEM,KIAA1429,PDP1,RAD54B,RBM12B,TMEM67"
TCGA.AG.A02X.01A	8	94713435	104513125	593	-0.2773	NEUTRAL	NA	61	"ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,CCNE2,CDH17,COX6C,CPQ,CTHRC1,DCAF13,DPY19L4,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,FZD6,GDF6,GEM,GRHL2,HRSP12,INTS8,KCNS2,KIAA1429,KLF10,LAPTM4B,MATN2,MTDH,MTERF3,NCALD,NDUFAF6,NIPAL2,ODF1,OSR2,PABPC1,PDP1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RIMS2,RNF19A,RPL30,RRM2B,SDC2,SLC25A32,SNX31,SPAG1,STK3,TMEM67,TP53INP1,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZNF706"
TCGA.A6.3808.01A	8	94730851	101092315	394	0.1876	NEUTRAL	NA	38	"C8orf37,CCNE2,CDH17,COX6C,CPQ,DPY19L4,ERICH5,ESRP1,FAM92A1,FSBP,GDF6,GEM,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PDP1,PLEKHF2,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RPL30,SDC2,STK3,TMEM67,TP53INP1,TSPYL5,UQCRB,VPS13B"
TCGA.AA.A00N.01A	8	94745594	94828564	28	0.2417	NEUTRAL	NA	2	"RBM12B,TMEM67"
TCGA.AA.A00L.01A	8	94746542	98289449	189	0.0426	NEUTRAL	NA	23	"C8orf37,CCNE2,CDH17,CPQ,DPY19L4,ESRP1,FSBP,GDF6,GEM,INTS8,KIAA1429,MTERF3,NDUFAF6,PDP1,PLEKHF2,PTDSS1,RAD54B,RBM12B,SDC2,TMEM67,TP53INP1,TSPYL5,UQCRB"
TCGA.CK.5914.01A	8	94777607	95835609	117	0.042	NEUTRAL	NA	10	"CDH17,DPY19L4,ESRP1,FSBP,GEM,INTS8,KIAA1429,PDP1,RAD54B,TMEM67"
TCGA.AG.3909.01A	8	94827521	95142807	8	-0.0145	NEUTRAL	NA	3	"CDH17,PDP1,TMEM67"
TCGA.AA.A00F.01A	8	94828564	95140418	5	0.3718	NEUTRAL	NA	3	"CDH17,PDP1,TMEM67"
TCGA.AY.A8YK	8	94882612	95303455	188	0.1714	NEUTRAL	NA	3	"CDH17,GEM,PDP1"
TCGA.AG.4009.01A	8	94929992	94935365	4	-0.4843	NEUTRAL	NA	1	PDP1
TCGA.CA.5797	8	94967716	97315644	875	-0.3002	NEUTRAL	NA	17	"C8orf37,CCNE2,CDH17,DPY19L4,ESRP1,FSBP,GDF6,GEM,INTS8,KIAA1429,MTERF3,NDUFAF6,PLEKHF2,PTDSS1,RAD54B,TP53INP1,UQCRB"
TCGA.AG.3906.01A	8	95140418	95676888	63	-0.0384	NEUTRAL	NA	6	"CDH17,ESRP1,FSBP,GEM,KIAA1429,RAD54B"
TCGA.AA.A010.01A	8	95140418	95879295	109	0.2022	NEUTRAL	NA	8	"CDH17,DPY19L4,ESRP1,FSBP,GEM,INTS8,KIAA1429,RAD54B"
TCGA.AG.4009.01A	8	95140418	95888238	109	0.2968	NEUTRAL	NA	8	"CDH17,DPY19L4,ESRP1,FSBP,GEM,INTS8,KIAA1429,RAD54B"
TCGA.AA.A00F.01A	8	95142807	95795856	71	-0.0534	NEUTRAL	NA	7	"CDH17,DPY19L4,ESRP1,FSBP,GEM,KIAA1429,RAD54B"
TCGA.AA.3980.01A	8	95188762	95894958	107	-0.5037	NEUTRAL	NA	9	"CCNE2,CDH17,DPY19L4,ESRP1,FSBP,GEM,INTS8,KIAA1429,RAD54B"
TCGA.A6.5666	8	95239296	100505236	1560	0.2793	NEUTRAL	NA	31	"C8orf37,CCNE2,CPQ,DPY19L4,ERICH5,ESRP1,FSBP,GDF6,GEM,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PLEKHF2,POP1,PTDSS1,RAD54B,RPL30,SDC2,STK3,TP53INP1,TSPYL5,UQCRB,VPS13B"
TCGA.AG.3909.01A	8	95262506	95265206	3	-0.2953	NEUTRAL	NA	1	GEM
TCGA.AG.3893	8	95346516	146293413	16538	0.0095	NEUTRAL	NA	240	Too-Many
TCGA.AA.3850	8	95418787	96474688	357	0.28855	NEUTRAL	NA	11	"C8orf37,CCNE2,DPY19L4,ESRP1,FSBP,INTS8,KIAA1429,NDUFAF6,PLEKHF2,RAD54B,TP53INP1"
TCGA.AA.3509.01A	8	95470468	100115134	244	0.3199	NEUTRAL	NA	29	"C8orf37,CCNE2,CPQ,DPY19L4,ERICH5,ESRP1,GDF6,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PLEKHF2,POP1,PTDSS1,RAD54B,RPL30,SDC2,STK3,TP53INP1,TSPYL5,UQCRB,VPS13B"
TCGA.AZ.4684.01A	8	95470468	100115134	244	0.0263	NEUTRAL	NA	29	"C8orf37,CCNE2,CPQ,DPY19L4,ERICH5,ESRP1,GDF6,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PLEKHF2,POP1,PTDSS1,RAD54B,RPL30,SDC2,STK3,TP53INP1,TSPYL5,UQCRB,VPS13B"
TCGA.AA.A02F.01A	8	95547025	97797086	117	-0.3863	NEUTRAL	NA	15	"C8orf37,CCNE2,CPQ,DPY19L4,ESRP1,GDF6,INTS8,KIAA1429,MTERF3,NDUFAF6,PLEKHF2,PTDSS1,SDC2,TP53INP1,UQCRB"
TCGA.A6.6653	8	95639201	95718447	27	0.1248	NEUTRAL	NA	1	ESRP1
TCGA.AA.A00N.01A	8	95653510	95835609	33	-0.2178	NEUTRAL	NA	3	"DPY19L4,ESRP1,INTS8"
TCGA.AG.A01L.01A	8	95658354	101153874	299	-0.0661	NEUTRAL	NA	30	"C8orf37,CCNE2,COX6C,CPQ,DPY19L4,ERICH5,ESRP1,FBXO43,GDF6,HRSP12,INTS8,KCNS2,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PLEKHF2,POP1,PTDSS1,RGS22,RPL30,SDC2,STK3,TP53INP1,TSPYL5,UQCRB,VPS13B"
TCGA.AG.3906.01A	8	95677168	95789853	19	0.2138	NEUTRAL	NA	2	"DPY19L4,ESRP1"
TCGA.AG.A00C.01A	8	95680145	95801937	23	-0.0344	NEUTRAL	NA	2	"DPY19L4,ESRP1"
TCGA.CM.5868	8	95701145	146293413	16560	0.2632	NEUTRAL	NA	237	Too-Many
TCGA.A6.6653	8	95718532	95749022	8	-0.3846	NEUTRAL	NA	2	"DPY19L4,ESRP1"
TCGA.AA.3967.01A	8	95751653	96057726	54	0.1305	NEUTRAL	NA	5	"CCNE2,DPY19L4,INTS8,NDUFAF6,TP53INP1"
TCGA.A6.6653	8	95757022	96572940	321	0.0359	NEUTRAL	NA	7	"C8orf37,CCNE2,DPY19L4,INTS8,NDUFAF6,PLEKHF2,TP53INP1"
TCGA.AG.3906.01A	8	95792529	95839462	7	-0.2449	NEUTRAL	NA	2	"DPY19L4,INTS8"
TCGA.AA.3695	8	95793021	146293413	16579	0.2672	NEUTRAL	NA	236	Too-Many
TCGA.AG.3611.01A	8	95793297	95906089	37	-0.0621	NEUTRAL	NA	3	"CCNE2,DPY19L4,INTS8"
TCGA.AA.A00F.01A	8	95800075	95854526	12	0.2258	NEUTRAL	NA	2	"DPY19L4,INTS8"
TCGA.CM.6161	8	95812057	146293413	16531	0.3075	NEUTRAL	NA	235	Too-Many
TCGA.AG.A00C.01A	8	95837108	97270546	64	0.2552	NEUTRAL	NA	9	"C8orf37,CCNE2,GDF6,INTS8,MTERF3,NDUFAF6,PLEKHF2,TP53INP1,UQCRB"
TCGA.AG.3906.01A	8	95839897	95885553	18	0.093	NEUTRAL	NA	1	INTS8
TCGA.AG.3909.01A	8	95841141	95897641	25	0.1708	NEUTRAL	NA	2	"CCNE2,INTS8"
TCGA.CK.5914.01A	8	95844188	95863730	8	-0.4147	NEUTRAL	NA	1	INTS8
TCGA.AA.A00N.01A	8	95848705	95886704	16	-0.4701	NEUTRAL	NA	1	INTS8
TCGA.AA.A00F.01A	8	95861644	95871722	6	-0.1152	NEUTRAL	NA	1	INTS8
TCGA.F5.6813	8	95874553	96162963	85	-0.0927	NEUTRAL	NA	5	"CCNE2,INTS8,NDUFAF6,PLEKHF2,TP53INP1"
TCGA.A6.3807	8	95874553	98742158	1047	0.324	NEUTRAL	NA	14	"C8orf37,CCNE2,CPQ,GDF6,INTS8,MTDH,MTERF3,NDUFAF6,PLEKHF2,PTDSS1,SDC2,TP53INP1,TSPYL5,UQCRB"
TCGA.AA.A00F.01A	8	95877682	96275862	27	0.2453	NEUTRAL	NA	6	"C8orf37,CCNE2,INTS8,NDUFAF6,PLEKHF2,TP53INP1"
TCGA.AG.4009.01A	8	95892309	97285476	44	-0.2469	NEUTRAL	NA	10	"C8orf37,CCNE2,GDF6,INTS8,MTERF3,NDUFAF6,PLEKHF2,PTDSS1,TP53INP1,UQCRB"
TCGA.AG.3909.01A	8	95900107	97172515	25	-0.1815	NEUTRAL	NA	6	"C8orf37,CCNE2,GDF6,NDUFAF6,PLEKHF2,TP53INP1"
TCGA.CK.5914.01A	8	95942659	96275862	18	-0.4626	NEUTRAL	NA	4	"C8orf37,NDUFAF6,PLEKHF2,TP53INP1"
TCGA.AG.3611.01A	8	95942659	97274232	25	-0.3592	NEUTRAL	NA	8	"C8orf37,GDF6,MTERF3,NDUFAF6,PLEKHF2,PTDSS1,TP53INP1,UQCRB"
TCGA.AG.3906.01A	8	96044171	96259803	10	0.2212	NEUTRAL	NA	3	"C8orf37,NDUFAF6,PLEKHF2"
TCGA.AA.A010.01A	8	96044171	101190003	250	0.0521	NEUTRAL	NA	27	"C8orf37,COX6C,CPQ,ERICH5,FBXO43,GDF6,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PLEKHF2,POLR2K,POP1,PTDSS1,RGS22,RPL30,SDC2,SPAG1,STK3,TSPYL5,UQCRB,VPS13B"
TCGA.AA.A00N.01A	8	96053730	97256096	21	-0.4309	NEUTRAL	NA	6	"C8orf37,GDF6,MTERF3,NDUFAF6,PLEKHF2,UQCRB"
TCGA.AA.3967.01A	8	96059175	118849292	771	-0.3652	NEUTRAL	NA	74	"AARD,ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,COX6C,CPQ,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EIF3H,EMC2,ENY2,ERICH5,EXT1,FBXO43,FZD6,GDF6,GRHL2,HRSP12,KCNS2,KCNV1,KLF10,LAPTM4B,LRP12,MATN2,MED30,MTDH,MTERF3,NCALD,NDUFAF6,NIPAL2,NUDCD1,ODF1,OSR2,OXR1,PABPC1,PKHD1L1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD21,RGS22,RIMS2,RNF19A,RPL30,RRM2B,RSPO2,SDC2,SLC25A32,SLC30A8,SNX31,SPAG1,STK3,SYBU,TMEM74,TRHR,TRPS1,TSPYL5,UBR5,UQCRB,UTP23,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AA.3681	8	96080388	96189054	40	-0.504	NEUTRAL	NA	1	PLEKHF2
TCGA.F5.6813	8	96169006	97609890	651	0.2943	NEUTRAL	NA	6	"C8orf37,GDF6,MTERF3,PTDSS1,SDC2,UQCRB"
TCGA.AG.4015	8	96192854	96207319	11	-0.0565	NEUTRAL	NA	0	None
TCGA.AG.4015	8	96208086	146293413	16406	0.3384	NEUTRAL	NA	230	Too-Many
TCGA.AA.3681	8	96209271	96317909	49	-0.1259	NEUTRAL	NA	1	C8orf37
TCGA.CK.5914.01A	8	96281215	98863562	60	0.0406	NEUTRAL	NA	10	"C8orf37,CPQ,GDF6,LAPTM4B,MTDH,MTERF3,PTDSS1,SDC2,TSPYL5,UQCRB"
TCGA.AG.3891.01A	8	96281215	101190003	231	0.2176	NEUTRAL	NA	25	"C8orf37,COX6C,CPQ,ERICH5,FBXO43,GDF6,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,MTERF3,NIPAL2,OSR2,POLR2K,POP1,PTDSS1,RGS22,RPL30,SDC2,SPAG1,STK3,TSPYL5,UQCRB,VPS13B"
TCGA.AA.A00F.01A	8	96281215	101718837	212	-0.0638	NEUTRAL	NA	29	"ANKRD46,C8orf37,COX6C,CPQ,ERICH5,FBXO43,GDF6,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,MTERF3,NIPAL2,OSR2,PABPC1,POLR2K,POP1,PTDSS1,RGS22,RNF19A,RPL30,SDC2,SNX31,SPAG1,STK3,TSPYL5,UQCRB,VPS13B"
TCGA.AA.3841	8	96307549	146293413	16418	0.3013	NEUTRAL	NA	229	Too-Many
TCGA.AA.3681	8	96320183	146293413	16410	0.3306	NEUTRAL	NA	229	Too-Many
TCGA.BM.6198	8	96450446	96596131	94	-0.46265	NEUTRAL	NA	0	None
TCGA.AA.3941	8	96473430	96478762	4	0.2636	NEUTRAL	NA	0	None
TCGA.AA.3941	8	96494946	96658515	68	0.2605	NEUTRAL	NA	0	None
TCGA.AA.3850	8	96504209	96773933	134	-0.05975	NEUTRAL	NA	0	None
TCGA.BM.6198	8	96599780	146293413	16245	0.06685	NEUTRAL	NA	229	Too-Many
TCGA.A6.6653	8	96645827	135770283	12851	0.0004	NEUTRAL	NA	130	Too-Many
TCGA.AA.3941	8	96784900	96921128	72	0.2831	NEUTRAL	NA	0	None
TCGA.AA.3850	8	96787821	96921128	66	-0.23485	NEUTRAL	NA	0	None
TCGA.AA.3850	8	96972942	97875314	290	0.04285	NEUTRAL	NA	6	"CPQ,GDF6,MTERF3,PTDSS1,SDC2,UQCRB"
TCGA.AG.3906.01A	8	97243220	101174462	226	0.0214	NEUTRAL	NA	23	"COX6C,CPQ,ERICH5,FBXO43,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,MTERF3,NIPAL2,OSR2,POLR2K,POP1,PTDSS1,RGS22,RPL30,SDC2,SPAG1,STK3,TSPYL5,UQCRB,VPS13B"
TCGA.AG.A00C.01A	8	97274232	98155196	24	-0.179	NEUTRAL	NA	3	"CPQ,PTDSS1,SDC2"
TCGA.AG.3611.01A	8	97285476	98718823	34	-0.1482	NEUTRAL	NA	5	"CPQ,MTDH,PTDSS1,SDC2,TSPYL5"
TCGA.AG.4009.01A	8	97296270	99786911	110	0.1944	NEUTRAL	NA	14	"CPQ,ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,NIPAL2,POP1,PTDSS1,RPL30,SDC2,STK3,TSPYL5"
TCGA.CA.5797	8	97316820	98336545	315	0.0046	NEUTRAL	NA	4	"CPQ,PTDSS1,SDC2,TSPYL5"
TCGA.AG.A02G.01A	8	97345648	146279416	1834	0.0632	NEUTRAL	NA	226	Too-Many
TCGA.DC.6157	8	97354539	146293413	15782	0.2484	NEUTRAL	NA	225	Too-Many
TCGA.AG.A01W.01A	8	97385414	99293766	90	-0.0977	NEUTRAL	NA	11	"CPQ,ERICH5,HRSP12,LAPTM4B,MATN2,MTDH,NIPAL2,POP1,RPL30,SDC2,TSPYL5"
TCGA.AH.6549.01A	8	97506441	100548815	137	0.2528	NEUTRAL	NA	15	"CPQ,ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,NIPAL2,OSR2,POP1,RPL30,SDC2,STK3,TSPYL5,VPS13B"
TCGA.F5.6813	8	97610087	107035119	2570	-0.0254	NEUTRAL	NA	44	"ANKRD46,ATP6V1C1,AZIN1,BAALC,COX6C,CPQ,CTHRC1,DCAF13,DCSTAMP,DPYS,ERICH5,FBXO43,FZD6,GRHL2,HRSP12,KCNS2,KLF10,LAPTM4B,LRP12,MATN2,MTDH,NCALD,NIPAL2,ODF1,OSR2,PABPC1,POLR2K,POP1,RGS22,RIMS2,RNF19A,RPL30,RRM2B,SDC2,SLC25A32,SNX31,SPAG1,STK3,TSPYL5,UBR5,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AA.A02K.01A	8	97620545	98078209	8	-0.2995	NEUTRAL	NA	2	"CPQ,SDC2"
TCGA.AA.3941	8	97671896	98076433	56	-0.1756	NEUTRAL	NA	1	CPQ
TCGA.AA.3982	8	97672159	98084081	57	0.2165	NEUTRAL	NA	1	CPQ
TCGA.AA.A02F.01A	8	97847154	99054841	45	0.1221	NEUTRAL	NA	6	"CPQ,LAPTM4B,MATN2,MTDH,RPL30,TSPYL5"
TCGA.AA.3850	8	97898899	98105872	31	-0.41365	NEUTRAL	NA	1	CPQ
TCGA.AA.3941	8	98078586	98295059	70	0.3137	NEUTRAL	NA	2	"CPQ,TSPYL5"
TCGA.AA.3850	8	98110462	98435683	148	0.05035	NEUTRAL	NA	2	"CPQ,TSPYL5"
TCGA.AA.A02K.01A	8	98155208	144804205	1901	0.0354	NEUTRAL	NA	174	Too-Many
TCGA.D5.6532	8	98219490	146293413	15706	-0.0024	NEUTRAL	NA	223	Too-Many
TCGA.AG.A00C.01A	8	98288797	99057130	42	0.1371	NEUTRAL	NA	5	"LAPTM4B,MATN2,MTDH,RPL30,TSPYL5"
TCGA.AA.3941	8	98314993	98433055	78	0.2834	NEUTRAL	NA	0	None
TCGA.CA.5797	8	98353022	125400694	7900	-0.0127	NEUTRAL	NA	93	"AARD,ABRA,ANGPT1,ANKRD46,ANXA13,ATAD2,ATP6V1C1,AZIN1,BAALC,C8orf76,COL14A1,COLEC10,COX6C,CSMD3,CTHRC1,DCAF13,DCSTAMP,DEPTOR,DERL1,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,ERICH5,EXT1,FAM83A,FAM91A1,FBXO32,FBXO43,FER1L6,FZD6,GRHL2,HAS2,HRSP12,KCNS2,KCNV1,KLF10,KLHL38,LAPTM4B,LRP12,MAL2,MATN2,MED30,MRPL13,MTBP,MTDH,NCALD,NIPAL2,NOV,NUDCD1,ODF1,OSR2,OXR1,PABPC1,PKHD1L1,POLR2K,POP1,RAD21,RGS22,RIMS2,RNF19A,RPL30,RRM2B,RSPO2,SAMD12,SLC25A32,SLC30A8,SNTB1,SNX31,SPAG1,STK3,SYBU,TAF2,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRPS1,UBR5,UTP23,VPS13B,WDYHV1,YWHAZ,ZFPM2,ZHX1,ZHX1-C8orf76,ZHX2,ZNF706"
TCGA.AA.3941	8	98436904	98549598	32	0.3461	NEUTRAL	NA	0	None
TCGA.AA.3850	8	98446269	99453203	338	0.21535	NEUTRAL	NA	9	"ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,NIPAL2,POP1,RPL30"
TCGA.G4.6299	8	98494080	104717617	1708	0.2815	NEUTRAL	NA	37	"ANKRD46,ATP6V1C1,AZIN1,BAALC,COX6C,CTHRC1,DCAF13,ERICH5,FBXO43,FZD6,GRHL2,HRSP12,KCNS2,KLF10,LAPTM4B,MATN2,MTDH,NCALD,NIPAL2,ODF1,OSR2,PABPC1,POLR2K,POP1,RGS22,RIMS2,RNF19A,RPL30,RRM2B,SLC25A32,SNX31,SPAG1,STK3,UBR5,VPS13B,YWHAZ,ZNF706"
TCGA.AA.A00L.01A	8	98735115	99076827	15	-0.1039	NEUTRAL	NA	5	"ERICH5,LAPTM4B,MATN2,MTDH,RPL30"
TCGA.AG.3611.01A	8	98827493	146279416	1592	-0.1752	NEUTRAL	NA	221	Too-Many
TCGA.AA.3930.01A	8	99039616	103300341	271	0.3645	NEUTRAL	NA	25	"ANKRD46,COX6C,ERICH5,FBXO43,GRHL2,HRSP12,KCNS2,MATN2,NCALD,NIPAL2,OSR2,PABPC1,POLR2K,POP1,RGS22,RNF19A,RPL30,RRM2B,SNX31,SPAG1,STK3,UBR5,VPS13B,YWHAZ,ZNF706"
TCGA.CK.5914.01A	8	99042639	99146132	24	-0.2225	NEUTRAL	NA	5	"ERICH5,HRSP12,MATN2,POP1,RPL30"
TCGA.AA.A00N.01A	8	99057485	99837654	49	0.2583	NEUTRAL	NA	7	"ERICH5,HRSP12,KCNS2,NIPAL2,POP1,RPL30,STK3"
TCGA.AG.A00C.01A	8	99057485	101092315	137	-0.1245	NEUTRAL	NA	11	"COX6C,ERICH5,HRSP12,KCNS2,NIPAL2,OSR2,POP1,RGS22,RPL30,STK3,VPS13B"
TCGA.AA.3939.01A	8	99076827	142173382	1591	0.2753	NEUTRAL	NA	128	Too-Many
TCGA.5M.AAT5	8	99078914	146293413	15378	0.18	NEUTRAL	NA	218	Too-Many
TCGA.AA.A02F.01A	8	99101342	146279416	1604	0.2362	NEUTRAL	NA	218	Too-Many
TCGA.AA.A00L.01A	8	99168229	100904107	82	0.0213	NEUTRAL	NA	7	"COX6C,KCNS2,NIPAL2,OSR2,POP1,STK3,VPS13B"
TCGA.CK.5914.01A	8	99248316	99837654	15	-0.154	NEUTRAL	NA	3	"KCNS2,NIPAL2,STK3"
TCGA.AG.A01W.01A	8	99303834	103289531	220	0.2033	NEUTRAL	NA	20	"ANKRD46,COX6C,FBXO43,GRHL2,KCNS2,NCALD,NIPAL2,OSR2,PABPC1,POLR2K,RGS22,RNF19A,RRM2B,SNX31,SPAG1,STK3,UBR5,VPS13B,YWHAZ,ZNF706"
TCGA.AA.3941	8	99453203	99569734	22	0.0004	NEUTRAL	NA	1	STK3
TCGA.AA.3850	8	99455310	100795281	125	-0.41055	NEUTRAL	NA	3	"OSR2,STK3,VPS13B"
TCGA.AA.3982	8	99557127	99569407	6	-0.1465	NEUTRAL	NA	1	STK3
TCGA.AG.4009.01A	8	100108528	101092315	86	0.2098	NEUTRAL	NA	3	"COX6C,RGS22,VPS13B"
TCGA.CK.5914.01A	8	100108528	101105606	87	0.1337	NEUTRAL	NA	3	"COX6C,RGS22,VPS13B"
TCGA.DM.A28M.01A	8	100155194	109094723	374	-0.0459	NEUTRAL	NA	34	"ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,COX6C,CTHRC1,DCAF13,DCSTAMP,DPYS,FBXO43,FZD6,GRHL2,KLF10,LRP12,NCALD,ODF1,OXR1,PABPC1,POLR2K,RGS22,RIMS2,RNF19A,RRM2B,RSPO2,SLC25A32,SNX31,SPAG1,UBR5,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AG.3909.01A	8	100160037	100182220	3	-0.3036	NEUTRAL	NA	1	VPS13B
TCGA.A6.3807	8	100202481	105310904	1450	0.3253	NEUTRAL	NA	26	"ANKRD46,ATP6V1C1,AZIN1,BAALC,COX6C,CTHRC1,DCAF13,FBXO43,FZD6,GRHL2,KLF10,NCALD,ODF1,PABPC1,POLR2K,RGS22,RIMS2,RNF19A,RRM2B,SLC25A32,SNX31,SPAG1,UBR5,VPS13B,YWHAZ,ZNF706"
TCGA.AA.3941	8	100341365	100832873	61	-0.0575	NEUTRAL	NA	1	VPS13B
TCGA.AA.3982	8	100341365	100832873	61	0.2742	NEUTRAL	NA	1	VPS13B
TCGA.AH.6549.01A	8	100568659	106815023	321	-0.0566	NEUTRAL	NA	30	"ANKRD46,ATP6V1C1,AZIN1,BAALC,COX6C,CTHRC1,DCAF13,DCSTAMP,DPYS,FBXO43,FZD6,GRHL2,KLF10,LRP12,NCALD,ODF1,PABPC1,POLR2K,RGS22,RIMS2,RNF19A,RRM2B,SLC25A32,SNX31,SPAG1,UBR5,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AY.A8YK	8	100593921	100660250	14	0.1285	NEUTRAL	NA	1	VPS13B
TCGA.AA.3850	8	100819775	102756689	654	0.20845	NEUTRAL	NA	14	"ANKRD46,COX6C,FBXO43,GRHL2,NCALD,PABPC1,POLR2K,RGS22,RNF19A,SNX31,SPAG1,VPS13B,YWHAZ,ZNF706"
TCGA.AG.3909.01A	8	100847406	100873956	6	0.3009	NEUTRAL	NA	1	VPS13B
TCGA.AA.A00L.01A	8	101075632	101252653	21	0.3403	NEUTRAL	NA	4	"FBXO43,POLR2K,RGS22,SPAG1"
TCGA.AG.4009.01A	8	101105606	101154311	7	-0.377	NEUTRAL	NA	2	"FBXO43,RGS22"
TCGA.AG.4009.01A	8	101157222	101541780	32	0.0568	NEUTRAL	NA	5	"ANKRD46,FBXO43,POLR2K,RNF19A,SPAG1"
TCGA.AG.A01L.01A	8	101174462	103301650	110	0.0018	NEUTRAL	NA	11	"ANKRD46,GRHL2,NCALD,PABPC1,RNF19A,RRM2B,SNX31,SPAG1,UBR5,YWHAZ,ZNF706"
TCGA.AG.3909.01A	8	101177990	101243344	12	0.0022	NEUTRAL	NA	1	SPAG1
TCGA.CK.5914.01A	8	101190003	101206293	7	0.2168	NEUTRAL	NA	1	SPAG1
TCGA.AA.A00N.01A	8	101190003	101661443	40	0.1284	NEUTRAL	NA	4	"ANKRD46,RNF19A,SNX31,SPAG1"
TCGA.AG.A00C.01A	8	101190003	101717115	41	0.0181	NEUTRAL	NA	5	"ANKRD46,PABPC1,RNF19A,SNX31,SPAG1"
TCGA.AA.A010.01A	8	101245608	101661443	28	0.1409	NEUTRAL	NA	4	"ANKRD46,RNF19A,SNX31,SPAG1"
TCGA.AG.3906.01A	8	101245608	101661443	28	-0.0768	NEUTRAL	NA	4	"ANKRD46,RNF19A,SNX31,SPAG1"
TCGA.A6.3808.01A	8	101245608	104778445	183	0.1472	NEUTRAL	NA	21	"ANKRD46,ATP6V1C1,AZIN1,BAALC,CTHRC1,DCAF13,FZD6,GRHL2,KLF10,NCALD,ODF1,PABPC1,RIMS2,RNF19A,RRM2B,SLC25A32,SNX31,SPAG1,UBR5,YWHAZ,ZNF706"
TCGA.AA.A00Q.01A	8	101252653	101661443	26	0.0354	NEUTRAL	NA	4	"ANKRD46,RNF19A,SNX31,SPAG1"
TCGA.AG.3891.01A	8	101270742	101625172	21	0.2394	NEUTRAL	NA	3	"ANKRD46,RNF19A,SNX31"
TCGA.AA.A00L.01A	8	101270742	106810941	209	-0.0349	NEUTRAL	NA	24	"ANKRD46,ATP6V1C1,AZIN1,BAALC,CTHRC1,DCAF13,DCSTAMP,DPYS,FZD6,GRHL2,KLF10,LRP12,NCALD,ODF1,PABPC1,RIMS2,RNF19A,RRM2B,SLC25A32,SNX31,UBR5,YWHAZ,ZFPM2,ZNF706"
TCGA.CK.5914.01A	8	101270742	113518868	447	0.1359	NEUTRAL	NA	39	"ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,FZD6,GRHL2,KCNV1,KLF10,LRP12,NCALD,NUDCD1,ODF1,OXR1,PABPC1,PKHD1L1,RIMS2,RNF19A,RRM2B,RSPO2,SLC25A32,SNX31,SYBU,TMEM74,TRHR,UBR5,YWHAZ,ZFPM2,ZNF706"
TCGA.AA.3941	8	101535034	101556736	9	-0.2431	NEUTRAL	NA	1	ANKRD46
TCGA.AG.4009.01A	8	101661443	101716476	2	0.002	NEUTRAL	NA	2	"PABPC1,SNX31"
TCGA.AG.3909.01A	8	101661443	101937104	17	0.0635	NEUTRAL	NA	3	"PABPC1,SNX31,YWHAZ"
TCGA.AG.4009.01A	8	101717115	102504911	19	-0.3459	NEUTRAL	NA	4	"GRHL2,PABPC1,YWHAZ,ZNF706"
TCGA.AA.A00Q.01A	8	101721655	125561973	689	0.148	NEUTRAL	NA	77	"AARD,ABRA,ANGPT1,ANXA13,ATAD2,ATP6V1C1,AZIN1,BAALC,C8orf76,COL14A1,COLEC10,CSMD3,CTHRC1,DCAF13,DCSTAMP,DEPTOR,DERL1,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,FZD6,GRHL2,HAS2,KCNV1,KLF10,KLHL38,LRP12,MAL2,MED30,MRPL13,MTBP,NCALD,NDUFB9,NOV,NUDCD1,ODF1,OXR1,PABPC1,PKHD1L1,RAD21,RIMS2,RNF139,RRM2B,RSPO2,SAMD12,SLC25A32,SLC30A8,SNTB1,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRMT12,TRPS1,UBR5,UTP23,WDYHV1,YWHAZ,ZFPM2,ZHX1,ZHX1-C8orf76,ZHX2,ZNF706"
TCGA.AG.3891.01A	8	101733572	144802638	1529	0.1319	NEUTRAL	NA	152	Too-Many
TCGA.D5.6531	8	101764748	102327841	200	-0.2731	NEUTRAL	NA	2	"YWHAZ,ZNF706"
TCGA.AA.A010.01A	8	101932939	103572661	87	0.1355	NEUTRAL	NA	7	"GRHL2,NCALD,ODF1,RRM2B,UBR5,YWHAZ,ZNF706"
TCGA.A6.2677	8	102165282	103203726	390	0.202	NEUTRAL	NA	3	"GRHL2,NCALD,ZNF706"
TCGA.AA.3831	8	102254021	146293413	14681	0.0058	NEUTRAL	NA	199	Too-Many
TCGA.D5.6531	8	102327895	146293413	14656	0.2149	NEUTRAL	NA	199	Too-Many
TCGA.AZ.6606	8	102398891	116367486	3781	0.3192	NEUTRAL	NA	33	"ABRA,ANGPT1,ATP6V1C1,AZIN1,BAALC,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,FZD6,GRHL2,KCNV1,KLF10,LRP12,NCALD,NUDCD1,ODF1,OXR1,PKHD1L1,RIMS2,RRM2B,RSPO2,SLC25A32,SYBU,TMEM74,TRHR,UBR5,ZFPM2"
TCGA.A6.5666	8	102398891	146293413	14611	0.274	NEUTRAL	NA	199	Too-Many
TCGA.AG.A00C.01A	8	102504911	102731443	19	-0.2111	NEUTRAL	NA	2	"GRHL2,NCALD"
TCGA.AG.3906.01A	8	102504911	103298540	48	-0.027	NEUTRAL	NA	4	"GRHL2,NCALD,RRM2B,UBR5"
TCGA.AA.A00F.01A	8	102504911	103572661	81	-0.1161	NEUTRAL	NA	5	"GRHL2,NCALD,ODF1,RRM2B,UBR5"
TCGA.AG.4009.01A	8	102555442	103572661	79	0.2258	NEUTRAL	NA	5	"GRHL2,NCALD,ODF1,RRM2B,UBR5"
TCGA.AA.3850	8	102762795	103058161	110	-0.38255	NEUTRAL	NA	1	NCALD
TCGA.AA.3941	8	102762795	103058161	111	0.1297	NEUTRAL	NA	1	NCALD
TCGA.AA.3850	8	103058600	104156602	334	0.27455	NEUTRAL	NA	8	"ATP6V1C1,AZIN1,BAALC,KLF10,NCALD,ODF1,RRM2B,UBR5"
TCGA.AA.3941	8	103152598	103194887	20	0.086	NEUTRAL	NA	0	None
TCGA.AA.3941	8	103208027	103219362	4	-0.2972	NEUTRAL	NA	1	RRM2B
TCGA.AG.A00C.01A	8	103220321	103266491	10	0.2629	NEUTRAL	NA	2	"RRM2B,UBR5"
TCGA.AG.3909.01A	8	103230990	103271191	9	-0.07	NEUTRAL	NA	2	"RRM2B,UBR5"
TCGA.AA.A00N.01A	8	103250991	103281159	10	-0.2504	NEUTRAL	NA	2	"RRM2B,UBR5"
TCGA.AG.A00C.01A	8	103269804	103372777	47	-0.1306	NEUTRAL	NA	1	UBR5
TCGA.AG.3906.01A	8	103299612	103326922	18	-0.4421	NEUTRAL	NA	1	UBR5
TCGA.AA.3930.01A	8	103301650	103324311	14	-0.0886	NEUTRAL	NA	1	UBR5
TCGA.AG.A015.01A	8	103305793	103341308	19	0.3321	NEUTRAL	NA	1	UBR5
TCGA.AG.A01L.01A	8	103317264	142202410	1274	-0.0981	NEUTRAL	NA	106	Too-Many
TCGA.AA.3930.01A	8	103325985	113240935	298	0.2091	NEUTRAL	NA	30	"ABRA,ANGPT1,ATP6V1C1,AZIN1,BAALC,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,FZD6,KCNV1,KLF10,LRP12,NUDCD1,ODF1,OXR1,PKHD1L1,RIMS2,RSPO2,SLC25A32,SYBU,TMEM74,TRHR,UBR5,ZFPM2"
TCGA.AG.3906.01A	8	103335509	103373771	12	-0.0416	NEUTRAL	NA	1	UBR5
TCGA.AG.A01W.01A	8	103352489	103367717	10	0.0417	NEUTRAL	NA	1	UBR5
TCGA.AG.A015.01A	8	103354672	146279416	1500	-0.1089	NEUTRAL	NA	196	Too-Many
TCGA.AG.A00C.01A	8	103373307	104053017	17	0.3256	NEUTRAL	NA	5	"ATP6V1C1,AZIN1,KLF10,ODF1,UBR5"
TCGA.A6.2677	8	103508074	103949652	133	0.2741	NEUTRAL	NA	3	"AZIN1,KLF10,ODF1"
TCGA.AA.A00F.01A	8	103662361	103855727	13	0.252	NEUTRAL	NA	2	"AZIN1,KLF10"
TCGA.AG.4009.01A	8	103662361	103855727	13	-0.2963	NEUTRAL	NA	2	"AZIN1,KLF10"
TCGA.AG.3909.01A	8	103663327	104068034	19	0.2547	NEUTRAL	NA	3	"ATP6V1C1,AZIN1,KLF10"
TCGA.AM.5821	8	103981313	146293413	14048	0.3619	NEUTRAL	NA	192	Too-Many
TCGA.AG.3594	8	103997434	107072026	864	0.3266	NEUTRAL	NA	11	"ATP6V1C1,BAALC,CTHRC1,DCAF13,DCSTAMP,DPYS,FZD6,LRP12,RIMS2,SLC25A32,ZFPM2"
TCGA.AA.A010.01A	8	104053017	104240185	14	0.1783	NEUTRAL	NA	2	"ATP6V1C1,BAALC"
TCGA.AA.A00F.01A	8	104053017	104343522	19	-0.068	NEUTRAL	NA	3	"ATP6V1C1,BAALC,FZD6"
TCGA.AG.3906.01A	8	104053017	118849292	380	-0.1309	NEUTRAL	NA	34	"AARD,ABRA,ANGPT1,ATP6V1C1,BAALC,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EIF3H,EMC2,ENY2,EXT1,FZD6,KCNV1,LRP12,MED30,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RSPO2,SLC25A32,SLC30A8,SYBU,TMEM74,TRHR,TRPS1,UTP23,ZFPM2"
TCGA.AG.4009.01A	8	104053017	124195050	591	0.1881	NEUTRAL	NA	52	"AARD,ABRA,ANGPT1,ATP6V1C1,BAALC,COL14A1,COLEC10,CSMD3,CTHRC1,DCAF13,DCSTAMP,DEPTOR,DERL1,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FZD6,HAS2,KCNV1,LRP12,MAL2,MED30,MRPL13,MTBP,NOV,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RSPO2,SAMD12,SLC25A32,SLC30A8,SNTB1,SYBU,TAF2,TBC1D31,TMEM74,TNFRSF11B,TRHR,TRPS1,UTP23,ZFPM2,ZHX2"
TCGA.AG.A00C.01A	8	104054530	104343522	18	-0.0842	NEUTRAL	NA	3	"ATP6V1C1,BAALC,FZD6"
TCGA.AA.3956	8	104063962	104067908	6	-0.075	NEUTRAL	NA	1	ATP6V1C1
TCGA.AA.3941	8	104157530	104365055	79	0.2617	NEUTRAL	NA	2	"BAALC,FZD6"
TCGA.AA.3850	8	104157530	105179157	239	-0.14535	NEUTRAL	NA	6	"BAALC,CTHRC1,DCAF13,FZD6,RIMS2,SLC25A32"
TCGA.AA.A010.01A	8	104383884	110478790	203	0.147	NEUTRAL	NA	19	"ABRA,ANGPT1,CTHRC1,DCAF13,DCSTAMP,DPYS,EIF3E,EMC2,ENY2,LRP12,NUDCD1,OXR1,PKHD1L1,RIMS2,RSPO2,SLC25A32,TMEM74,TRHR,ZFPM2"
TCGA.AG.3909.01A	8	104387917	104433156	12	-0.4532	NEUTRAL	NA	3	"CTHRC1,DCAF13,SLC25A32"
TCGA.AA.A00F.01A	8	104387917	104452317	18	0.3212	NEUTRAL	NA	3	"CTHRC1,DCAF13,SLC25A32"
TCGA.AG.A00C.01A	8	104387917	104513125	21	0.2507	NEUTRAL	NA	4	"CTHRC1,DCAF13,RIMS2,SLC25A32"
TCGA.AG.3909.01A	8	104438252	117954775	331	0.2991	NEUTRAL	NA	26	"AARD,ABRA,ANGPT1,CSMD3,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EIF3H,EMC2,ENY2,KCNV1,LRP12,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RSPO2,SYBU,TMEM74,TRHR,TRPS1,UTP23,ZFPM2"
TCGA.AA.3941	8	104438718	105884604	355	0.1902	NEUTRAL	NA	5	"DCAF13,DCSTAMP,DPYS,LRP12,RIMS2"
TCGA.AA.A00F.01A	8	104453635	110412268	98	-0.157	NEUTRAL	NA	17	"ABRA,ANGPT1,DCAF13,DCSTAMP,DPYS,EIF3E,EMC2,ENY2,LRP12,NUDCD1,OXR1,PKHD1L1,RIMS2,RSPO2,TMEM74,TRHR,ZFPM2"
TCGA.AG.A02X.01A	8	104709262	105521120	42	0.3584	NEUTRAL	NA	4	"DCSTAMP,DPYS,LRP12,RIMS2"
TCGA.AG.A00C.01A	8	104709262	120831539	414	-0.1953	NEUTRAL	NA	35	"AARD,ABRA,ANGPT1,COLEC10,CSMD3,DCSTAMP,DPYS,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,KCNV1,LRP12,MAL2,MED30,NOV,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RSPO2,SAMD12,SLC30A8,SYBU,TAF2,TMEM74,TNFRSF11B,TRHR,TRPS1,UTP23,ZFPM2"
TCGA.AA.3850	8	105205680	105525030	112	0.07855	NEUTRAL	NA	4	"DCSTAMP,DPYS,LRP12,RIMS2"
TCGA.G4.6311	8	105243752	108224764	936	0.3647	NEUTRAL	NA	7	"ABRA,DCSTAMP,DPYS,LRP12,OXR1,RIMS2,ZFPM2"
TCGA.CA.6718	8	105332500	146293413	13676	0.272	NEUTRAL	NA	185	Too-Many
TCGA.AA.3850	8	105532669	110711023	1544	-0.44705	NEUTRAL	NA	15	"ABRA,ANGPT1,EBAG9,EIF3E,EMC2,ENY2,LRP12,NUDCD1,OXR1,PKHD1L1,RSPO2,SYBU,TMEM74,TRHR,ZFPM2"
TCGA.AG.A02X.01A	8	105544062	126448209	714	-0.204	NEUTRAL	NA	64	"AARD,ABRA,ANGPT1,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KCNV1,KIAA0196,KLHL38,LRP12,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,NUDCD1,OXR1,PKHD1L1,RAD21,RNF139,RSPO2,SAMD12,SLC30A8,SNTB1,SQLE,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZFPM2,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3844	8	105549408	108351424	876	-0.3076	NEUTRAL	NA	5	"ABRA,ANGPT1,LRP12,OXR1,ZFPM2"
TCGA.AA.3811	8	105549408	110603478	1503	0.0229	NEUTRAL	NA	15	"ABRA,ANGPT1,EBAG9,EIF3E,EMC2,ENY2,LRP12,NUDCD1,OXR1,PKHD1L1,RSPO2,SYBU,TMEM74,TRHR,ZFPM2"
TCGA.AA.3941	8	105889755	106053787	59	-0.4228	NEUTRAL	NA	0	None
TCGA.AZ.6598	8	105981020	106376334	116	0.096	NEUTRAL	NA	1	ZFPM2
TCGA.AA.3941	8	106058346	106724710	184	0.1357	NEUTRAL	NA	1	ZFPM2
TCGA.AG.3731	8	106168937	128247044	6805	0.339	NEUTRAL	NA	64	"AARD,ABRA,ANGPT1,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KCNV1,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,NUDCD1,OXR1,PKHD1L1,RAD21,RNF139,RSPO2,SAMD12,SLC30A8,SNTB1,SQLE,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZFPM2,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.D5.5539	8	106795243	106820246	14	-0.0087	NEUTRAL	NA	1	ZFPM2
TCGA.AA.3941	8	106795243	110711023	1173	0.0753	NEUTRAL	NA	14	"ABRA,ANGPT1,EBAG9,EIF3E,EMC2,ENY2,NUDCD1,OXR1,PKHD1L1,RSPO2,SYBU,TMEM74,TRHR,ZFPM2"
TCGA.F5.6813	8	107042996	108866010	647	0.3709	NEUTRAL	NA	3	"ABRA,ANGPT1,OXR1"
TCGA.AG.3594	8	107073487	109063822	699	-0.0273	NEUTRAL	NA	4	"ABRA,ANGPT1,OXR1,RSPO2"
TCGA.A6.2677	8	107297072	108660502	458	0.1458	NEUTRAL	NA	3	"ABRA,ANGPT1,OXR1"
TCGA.AA.A00L.01A	8	107773218	109094723	16	0.1182	NEUTRAL	NA	3	"ABRA,ANGPT1,RSPO2"
TCGA.CM.4752	8	107870379	107871153	3	-0.3227	NEUTRAL	NA	0	None
TCGA.DY.A1DF	8	108083631	108616853	193	0.0755	NEUTRAL	NA	1	ANGPT1
TCGA.DC.5869	8	108141520	115626101	1773	0.2469	NEUTRAL	NA	13	"ANGPT1,CSMD3,EBAG9,EIF3E,EMC2,ENY2,KCNV1,NUDCD1,PKHD1L1,RSPO2,SYBU,TMEM74,TRHR"
TCGA.AH.6549.01A	8	108264031	125527910	640	-0.0758	NEUTRAL	NA	53	"AARD,ANGPT1,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KCNV1,KLHL38,MAL2,MED30,MRPL13,MTBP,NOV,NUDCD1,PKHD1L1,RAD21,RNF139,RSPO2,SAMD12,SLC30A8,SNTB1,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRMT12,TRPS1,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.5M.AAT4	8	108341988	108360344	5	-0.3135	NEUTRAL	NA	1	ANGPT1
TCGA.AA.3844	8	108364238	108571934	83	-0.3102	NEUTRAL	NA	1	ANGPT1
TCGA.AA.3844	8	108611643	110728882	584	-0.2715	NEUTRAL	NA	10	"EBAG9,EIF3E,EMC2,ENY2,NUDCD1,PKHD1L1,RSPO2,SYBU,TMEM74,TRHR"
TCGA.DY.A1DF	8	108626827	145683511	12592	0.3547	NEUTRAL	NA	159	Too-Many
TCGA.F5.6813	8	108871101	108923337	18	0.3013	NEUTRAL	NA	1	RSPO2
TCGA.G4.6322	8	108891885	109015797	40	0.0438	NEUTRAL	NA	1	RSPO2
TCGA.A6.2677	8	108891885	109111017	65	0.1246	NEUTRAL	NA	1	RSPO2
TCGA.CM.6170	8	108891885	146280470	12583	-0.0139	NEUTRAL	NA	178	Too-Many
TCGA.F5.6813	8	108924770	110782952	491	0.0158	NEUTRAL	NA	10	"EBAG9,EIF3E,EMC2,ENY2,NUDCD1,PKHD1L1,RSPO2,SYBU,TMEM74,TRHR"
TCGA.AG.3594	8	109064041	109261317	55	0.3584	NEUTRAL	NA	2	"EIF3E,RSPO2"
TCGA.G4.6322	8	109206025	146293413	12497	-0.0083	NEUTRAL	NA	177	Too-Many
TCGA.DM.A28M.01A	8	109226796	133627216	837	-0.0273	NEUTRAL	NA	70	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EBAG9,EFR3A,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,HHLA1,KCNQ3,KCNV1,KIAA0196,KLHL38,LRRC6,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,NUDCD1,OC90,PKHD1L1,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AG.3726	8	109246790	109415206	35	-0.0467	NEUTRAL	NA	1	EIF3E
TCGA.AG.3594	8	109261561	109780653	142	0.0124	NEUTRAL	NA	1	EMC2
TCGA.AA.A00N.01A	8	109462002	110100033	12	-0.2404	NEUTRAL	NA	3	"EMC2,TMEM74,TRHR"
TCGA.AG.3594	8	109787326	114541386	1006	0.3708	NEUTRAL	NA	9	"CSMD3,EBAG9,ENY2,KCNV1,NUDCD1,PKHD1L1,SYBU,TMEM74,TRHR"
TCGA.AA.A00L.01A	8	109796363	136659183	770	0.0257	NEUTRAL	NA	77	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EBAG9,EFR3A,EIF3H,ENPP2,ENY2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,HHLA1,KCNQ3,KCNV1,KHDRBS3,KIAA0196,KLHL38,LRRC6,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDRG1,NDUFB9,NOV,NSMCE2,NUDCD1,OC90,PHF20L1,PKHD1L1,POU5F1B,RAD21,RNF139,SAMD12,SLA,SLC30A8,SNTB1,SQLE,ST3GAL1,SYBU,TAF2,TATDN1,TBC1D31,TG,TMEM65,TMEM71,TMEM74,TNFRSF11B,TRHR,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,WISP1,ZFAT,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AG.3726	8	110391079	118602424	2035	0.0112	NEUTRAL	NA	12	"AARD,CSMD3,EBAG9,EIF3H,KCNV1,MED30,PKHD1L1,RAD21,SLC30A8,SYBU,TRPS1,UTP23"
TCGA.AG.A01W.01A	8	110403664	110415786	4	0.021	NEUTRAL	NA	1	PKHD1L1
TCGA.AA.A00F.01A	8	110456863	110980289	11	0.1195	NEUTRAL	NA	4	"EBAG9,KCNV1,PKHD1L1,SYBU"
TCGA.AA.A00N.01A	8	110488699	110516547	13	0.2965	NEUTRAL	NA	1	PKHD1L1
TCGA.AA.A010.01A	8	110502144	110516547	7	0.3262	NEUTRAL	NA	1	PKHD1L1
TCGA.AG.A01W.01A	8	110540984	110560913	9	0.0184	NEUTRAL	NA	2	"EBAG9,PKHD1L1"
TCGA.AA.3982	8	110692205	111435686	157	0.0862	NEUTRAL	NA	2	"KCNV1,SYBU"
TCGA.AA.3811	8	110692205	117103341	1459	-0.2875	NEUTRAL	NA	4	"CSMD3,KCNV1,SYBU,TRPS1"
TCGA.AA.3941	8	110719429	112249705	314	-0.4973	NEUTRAL	NA	1	KCNV1
TCGA.AA.A00F.01A	8	110984436	117868834	97	-0.326	NEUTRAL	NA	6	"CSMD3,EIF3H,KCNV1,RAD21,TRPS1,UTP23"
TCGA.AA.3982	8	111455604	111906863	89	0.2723	NEUTRAL	NA	0	None
TCGA.AA.3982	8	111989434	112249705	56	0.1534	NEUTRAL	NA	0	None
TCGA.AA.3941	8	112259168	116847724	1086	-0.2621	NEUTRAL	NA	2	"CSMD3,TRPS1"
TCGA.AA.3982	8	112259974	115738367	751	0.1241	NEUTRAL	NA	1	CSMD3
TCGA.F5.6813	8	112520667	114124832	352	-0.0985	NEUTRAL	NA	1	CSMD3
TCGA.AG.A014.01A	8	113240935	114388894	70	0.0114	NEUTRAL	NA	1	CSMD3
TCGA.AA.3930.01A	8	113243721	116635750	77	-0.2538	NEUTRAL	NA	2	"CSMD3,TRPS1"
TCGA.AA.A010.01A	8	113243721	117738215	84	0.1021	NEUTRAL	NA	3	"CSMD3,EIF3H,TRPS1"
TCGA.AA.3955	8	113933100	122800855	2792	-0.0429	NEUTRAL	NA	23	"AARD,COL14A1,COLEC10,CSMD3,DEPTOR,DSCC1,EIF3H,ENPP2,EXT1,HAS2,MAL2,MED30,MRPL13,MTBP,NOV,RAD21,SAMD12,SLC30A8,SNTB1,TAF2,TNFRSF11B,TRPS1,UTP23"
TCGA.AG.3594	8	114546462	115688963	276	-0.0257	NEUTRAL	NA	0	None
TCGA.QG.A5Z1	8	114822318	115049599	72	-0.0416	NEUTRAL	NA	0	None
TCGA.AY.A8YK	8	114885106	115146827	70	0.1502	NEUTRAL	NA	0	None
TCGA.AY.A8YK	8	115156333	115800716	153	-0.4494	NEUTRAL	NA	0	None
TCGA.DM.A28K	8	115319085	115365896	12	-0.2974	NEUTRAL	NA	0	None
TCGA.QG.A5Z1	8	115508312	116095691	186	0.0389	NEUTRAL	NA	0	None
TCGA.DC.5869	8	115662593	146280470	11038	0.3138	NEUTRAL	NA	166	Too-Many
TCGA.DC.4749	8	115726163	115886432	60	-0.3239	NEUTRAL	NA	0	None
TCGA.AA.3982	8	115753219	117430690	468	0.2699	NEUTRAL	NA	1	TRPS1
TCGA.AY.A8YK	8	115803395	116390912	196	0.17	NEUTRAL	NA	0	None
TCGA.F5.6571	8	115810384	146293413	11007	0.0273	NEUTRAL	NA	166	Too-Many
TCGA.AG.3594	8	115821045	117429756	446	0.0446	NEUTRAL	NA	1	TRPS1
TCGA.DC.4749	8	115891625	146293413	10996	0.2652	NEUTRAL	NA	166	Too-Many
TCGA.QG.A5Z1	8	116099631	116182596	31	-0.252	NEUTRAL	NA	0	None
TCGA.DC.6154	8	116254913	116262880	10	-0.0284	NEUTRAL	NA	0	None
TCGA.AY.A8YK	8	116695111	117062962	82	0.1238	NEUTRAL	NA	0	None
TCGA.AA.3941	8	116848488	120353266	1263	0.1852	NEUTRAL	NA	11	"AARD,COLEC10,EIF3H,EXT1,MAL2,MED30,RAD21,SAMD12,SLC30A8,TNFRSF11B,UTP23"
TCGA.AA.3844	8	116849718	129185917	4506	-0.1206	NEUTRAL	NA	49	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.A6.2677	8	116931840	122682192	1792	0.1602	NEUTRAL	NA	21	"AARD,COL14A1,COLEC10,DEPTOR,DSCC1,EIF3H,ENPP2,EXT1,HAS2,MAL2,MED30,MRPL13,MTBP,NOV,RAD21,SAMD12,SLC30A8,SNTB1,TAF2,TNFRSF11B,UTP23"
TCGA.AA.3811	8	117105558	133808414	6223	0.2276	NEUTRAL	NA	60	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EFR3A,EIF3H,ENPP2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,HHLA1,KCNQ3,KIAA0196,KLHL38,LRRC6,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,OC90,PHF20L1,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TMEM71,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3850	8	117135495	120353266	1200	-0.30405	NEUTRAL	NA	11	"AARD,COLEC10,EIF3H,EXT1,MAL2,MED30,RAD21,SAMD12,SLC30A8,TNFRSF11B,UTP23"
TCGA.AD.6901	8	117308779	132250355	5537	0.0378	NEUTRAL	NA	53	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.F5.6813	8	117506652	129903688	4632	-0.1006	NEUTRAL	NA	49	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3930.01A	8	117657193	121015179	142	0.1193	NEUTRAL	NA	16	"AARD,COLEC10,DEPTOR,DSCC1,EIF3H,ENPP2,EXT1,MAL2,MED30,NOV,RAD21,SAMD12,SLC30A8,TAF2,TNFRSF11B,UTP23"
TCGA.AA.A00N.01A	8	117660996	117864160	13	0.2947	NEUTRAL	NA	3	"EIF3H,RAD21,UTP23"
TCGA.AA.A00F.01A	8	117869459	117954775	7	0.2847	NEUTRAL	NA	2	"AARD,RAD21"
TCGA.AA.3982	8	117927840	118703874	271	0.3327	NEUTRAL	NA	3	"AARD,MED30,SLC30A8"
TCGA.AA.A00F.01A	8	118147506	120847084	95	-0.1447	NEUTRAL	NA	11	"COLEC10,DSCC1,ENPP2,EXT1,MAL2,MED30,NOV,SAMD12,SLC30A8,TAF2,TNFRSF11B"
TCGA.F4.6460	8	118594544	118620889	14	-0.0366	NEUTRAL	NA	0	None
TCGA.AZ.6605	8	118706200	146293413	10116	0.2815	NEUTRAL	NA	159	Too-Many
TCGA.AG.3906.01A	8	119209864	120252363	17	0.0105	NEUTRAL	NA	4	"COLEC10,MAL2,SAMD12,TNFRSF11B"
TCGA.AA.A010.01A	8	119209864	125527910	361	0.0881	NEUTRAL	NA	32	"ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,ENPP2,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KLHL38,MAL2,MRPL13,MTBP,NOV,RNF139,SAMD12,SNTB1,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AA.3982	8	119311479	119323838	8	-0.4492	NEUTRAL	NA	1	SAMD12
TCGA.AA.3982	8	119494143	119539319	28	0.074	NEUTRAL	NA	1	SAMD12
TCGA.G4.6311	8	119510729	125180386	1966	0.2542	NEUTRAL	NA	28	"ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,ENPP2,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KLHL38,MAL2,MRPL13,MTBP,NOV,SAMD12,SNTB1,TAF2,TBC1D31,TNFRSF11B,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AA.3982	8	119872997	119886922	8	-0.1812	NEUTRAL	NA	0	None
TCGA.T9.A92H	8	119885835	146293413	9630	-0.0054	NEUTRAL	NA	157	Too-Many
TCGA.AA.3982	8	119957638	120117233	75	0.3079	NEUTRAL	NA	2	"COLEC10,TNFRSF11B"
TCGA.AG.3906.01A	8	120255636	120431339	4	-0.4865	NEUTRAL	NA	2	"MAL2,NOV"
TCGA.AA.3982	8	120333034	120365612	19	-0.1805	NEUTRAL	NA	0	None
TCGA.A6.A56B	8	120339018	126705161	2200	0.0072	NEUTRAL	NA	35	"ANXA13,ATAD2,C8orf76,COL14A1,DEPTOR,DERL1,DSCC1,ENPP2,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,RNF139,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3850	8	120376553	120448931	28	-0.37025	NEUTRAL	NA	1	NOV
TCGA.AA.3941	8	120376553	120448931	28	0.2343	NEUTRAL	NA	1	NOV
TCGA.AG.3906.01A	8	120435067	142436988	852	-0.0299	NEUTRAL	NA	67	"ADCY8,AGO2,ANXA13,ASAP1,ATAD2,C8orf76,CHRAC1,COL14A1,COL22A1,DENND3,DEPTOR,DERL1,DSCC1,EFR3A,ENPP2,FAM135B,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GPR20,GSDMC,HAS2,HHLA1,KCNK9,KCNQ3,KHDRBS3,KIAA0196,KLHL38,LRRC6,MRPL13,MTBP,MTSS1,MYC,NDRG1,NDUFB9,NOV,NSMCE2,OC90,PHF20L1,POU5F1B,PTK2,PTP4A3,RNF139,SLA,SLC45A4,SNTB1,SQLE,ST3GAL1,TAF2,TATDN1,TBC1D31,TG,TMEM65,TMEM71,TRAPPC9,TRIB1,TRMT12,WDYHV1,WISP1,ZFAT,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3850	8	120452119	120852099	126	0.15015	NEUTRAL	NA	3	"DSCC1,ENPP2,TAF2"
TCGA.AG.A01W.01A	8	120504249	120665341	12	0.0579	NEUTRAL	NA	1	ENPP2
TCGA.AG.3909.01A	8	120850459	120865238	7	-0.5126	NEUTRAL	NA	1	DSCC1
TCGA.AA.A00F.01A	8	120850459	120886036	9	0.3462	NEUTRAL	NA	2	"DEPTOR,DSCC1"
TCGA.A6.3810.01A	8	120854005	120865238	6	-0.2336	NEUTRAL	NA	1	DSCC1
TCGA.A6.3810.01A	8	120867802	144296861	962	0.1796	NEUTRAL	NA	83	"ADCY8,ADGRB1,AGO2,ANXA13,ARC,ASAP1,ATAD2,C8orf31,C8orf76,CHRAC1,COL14A1,COL22A1,CYP11B1,CYP11B2,DENND3,DEPTOR,DERL1,DSCC1,EFR3A,FAM135B,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GML,GPIHBP1,GPR20,GSDMC,HAS2,HHLA1,JRK,KCNK9,KCNQ3,KHDRBS3,KIAA0196,KLHL38,LRRC6,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MROH5,MRPL13,MTBP,MTSS1,MYC,NDRG1,NDUFB9,NSMCE2,OC90,PHF20L1,POU5F1B,PSCA,PTK2,PTP4A3,RNF139,SLA,SLC45A4,SLURP1,SNTB1,SQLE,ST3GAL1,TATDN1,TBC1D31,TG,THEM6,TMEM65,TMEM71,TRAPPC9,TRIB1,TRMT12,TSNARE1,WDYHV1,WISP1,ZFAT,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AG.A01W.01A	8	120876917	121046603	22	-0.0012	NEUTRAL	NA	1	DEPTOR
TCGA.AG.A00C.01A	8	120886036	124219390	130	-0.1289	NEUTRAL	NA	10	"COL14A1,DEPTOR,DERL1,FAM83A,HAS2,MRPL13,MTBP,SNTB1,TBC1D31,ZHX2"
TCGA.AA.A00F.01A	8	120940598	124203991	126	-0.1554	NEUTRAL	NA	10	"COL14A1,DEPTOR,DERL1,FAM83A,HAS2,MRPL13,MTBP,SNTB1,TBC1D31,ZHX2"
TCGA.NH.A50U	8	120958269	146293413	9241	0.3082	NEUTRAL	NA	150	Too-Many
TCGA.AA.3967.01A	8	121013747	125057971	231	-0.2295	NEUTRAL	NA	20	"ANXA13,ATAD2,C8orf76,COL14A1,DEPTOR,DERL1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KLHL38,MRPL13,MTBP,SNTB1,TBC1D31,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AA.3930.01A	8	121019001	121259830	23	-0.1551	NEUTRAL	NA	2	"COL14A1,DEPTOR"
TCGA.AA.3850	8	121102761	121268268	42	0.13435	NEUTRAL	NA	1	COL14A1
TCGA.AA.3941	8	121106380	123561207	773	0.2081	NEUTRAL	NA	5	"COL14A1,HAS2,MRPL13,MTBP,SNTB1"
TCGA.CK.5914.01A	8	121209003	121275090	19	0.3358	NEUTRAL	NA	1	COL14A1
TCGA.AA.3930.01A	8	121262819	142200377	786	0.1149	NEUTRAL	NA	59	"ADCY8,AGO2,ANXA13,ASAP1,ATAD2,C8orf76,CHRAC1,COL14A1,COL22A1,DENND3,DERL1,EFR3A,FAM135B,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,HHLA1,KCNK9,KCNQ3,KHDRBS3,KIAA0196,KLHL38,LRRC6,MRPL13,MTBP,MTSS1,MYC,NDRG1,NDUFB9,NSMCE2,OC90,PHF20L1,POU5F1B,PTK2,RNF139,SLA,SNTB1,SQLE,ST3GAL1,TATDN1,TBC1D31,TG,TMEM65,TMEM71,TRAPPC9,TRIB1,TRMT12,WDYHV1,WISP1,ZFAT,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3850	8	121269835	123484614	697	-0.37215	NEUTRAL	NA	5	"COL14A1,HAS2,MRPL13,MTBP,SNTB1"
TCGA.QG.A5YX	8	121376283	124484583	1003	-0.0129	NEUTRAL	NA	14	"ATAD2,C8orf76,COL14A1,DERL1,FAM83A,HAS2,MRPL13,MTBP,SNTB1,TBC1D31,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AG.A01W.01A	8	121604022	124818651	111	0.1638	NEUTRAL	NA	15	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FAM91A1,FBXO32,HAS2,KLHL38,SNTB1,TBC1D31,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AA.3982	8	121728672	121798316	16	0.3152	NEUTRAL	NA	1	SNTB1
TCGA.AA.3982	8	121836472	122285554	170	0.326	NEUTRAL	NA	0	None
TCGA.5M.AAT4	8	121901050	121973774	29	0.0543	NEUTRAL	NA	0	None
TCGA.AA.3488	8	122116623	122116916	3	-0.1878	NEUTRAL	NA	0	None
TCGA.NH.A6GA	8	122350000	146293413	8802	-0.0036	NEUTRAL	NA	145	Too-Many
TCGA.A6.2677	8	122963520	123922465	317	0.1841	NEUTRAL	NA	1	ZHX2
TCGA.AA.3955	8	123046515	132209925	3509	0.3715	NEUTRAL	NA	32	"ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,DERL1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,KIAA0196,KLHL38,MTSS1,MYC,NDUFB9,NSMCE2,POU5F1B,RNF139,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3527	8	123249216	146293413	8523	0.0202	NEUTRAL	NA	144	Too-Many
TCGA.AA.3850	8	123488636	126705161	1206	0.24045	NEUTRAL	NA	25	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FAM91A1,FBXO32,FER1L6,KIAA0196,KLHL38,MTSS1,NDUFB9,NSMCE2,RNF139,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3975	8	123511651	123556647	24	0.1305	NEUTRAL	NA	0	None
TCGA.AA.3715	8	123812593	128401771	1730	0.2389	NEUTRAL	NA	26	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,KIAA0196,KLHL38,MTSS1,NDUFB9,NSMCE2,RNF139,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.A00N.01A	8	124031383	124219390	32	0.0692	NEUTRAL	NA	3	"DERL1,FAM83A,TBC1D31"
TCGA.AG.3909.01A	8	124033616	124203991	28	0.2113	NEUTRAL	NA	3	"DERL1,FAM83A,TBC1D31"
TCGA.CK.5914.01A	8	124089304	124359280	45	-0.1217	NEUTRAL	NA	6	"ATAD2,C8orf76,FAM83A,TBC1D31,ZHX1,ZHX1-C8orf76"
TCGA.AA.A02H.01A	8	124146304	124518583	51	-0.1433	NEUTRAL	NA	8	"ATAD2,C8orf76,FAM83A,FBXO32,TBC1D31,WDYHV1,ZHX1,ZHX1-C8orf76"
TCGA.A6.3808.01A	8	124156905	124340468	19	-0.363	NEUTRAL	NA	6	"ATAD2,C8orf76,FAM83A,TBC1D31,ZHX1,ZHX1-C8orf76"
TCGA.AA.A01Q.01A	8	124203991	124251240	9	-0.4952	NEUTRAL	NA	3	"C8orf76,FAM83A,ZHX1-C8orf76"
TCGA.AG.4009.01A	8	124203991	124357077	21	-0.0954	NEUTRAL	NA	5	"ATAD2,C8orf76,FAM83A,ZHX1,ZHX1-C8orf76"
TCGA.AG.A00C.01A	8	124251240	124546905	43	0.1981	NEUTRAL	NA	6	"ATAD2,C8orf76,FBXO32,WDYHV1,ZHX1,ZHX1-C8orf76"
TCGA.AA.A01Q.01A	8	124253433	124429045	31	0.2882	NEUTRAL	NA	5	"ATAD2,C8orf76,WDYHV1,ZHX1,ZHX1-C8orf76"
TCGA.AA.A00F.01A	8	124253433	146279416	802	-0.0866	NEUTRAL	NA	140	Too-Many
TCGA.AA.A00N.01A	8	124346071	124383868	21	0.2791	NEUTRAL	NA	1	ATAD2
TCGA.AG.4009.01A	8	124358339	125342912	113	0.2972	NEUTRAL	NA	8	"ANXA13,ATAD2,FAM91A1,FBXO32,FER1L6,KLHL38,TMEM65,WDYHV1"
TCGA.CK.5914.01A	8	124360346	124553092	30	0.3337	NEUTRAL	NA	3	"ATAD2,FBXO32,WDYHV1"
TCGA.AG.3909.01A	8	124381261	124546905	20	0.1247	NEUTRAL	NA	3	"ATAD2,FBXO32,WDYHV1"
TCGA.AA.A00N.01A	8	124384803	124553092	18	-0.4297	NEUTRAL	NA	3	"ATAD2,FBXO32,WDYHV1"
TCGA.AA.A01Q.01A	8	124440114	125022782	30	-0.0325	NEUTRAL	NA	6	"ANXA13,FAM91A1,FBXO32,FER1L6,KLHL38,WDYHV1"
TCGA.AG.A00C.01A	8	124657940	124749469	14	-0.1467	NEUTRAL	NA	2	"ANXA13,KLHL38"
TCGA.CK.5914.01A	8	124786266	124797832	10	-0.1268	NEUTRAL	NA	1	FAM91A1
TCGA.AG.3909.01A	8	124786266	124799451	12	-0.4627	NEUTRAL	NA	1	FAM91A1
TCGA.AA.A00N.01A	8	124798698	124822490	11	0.0973	NEUTRAL	NA	1	FAM91A1
TCGA.AG.A00C.01A	8	124798698	125342912	57	-0.1901	NEUTRAL	NA	3	"FAM91A1,FER1L6,TMEM65"
TCGA.AG.A01W.01A	8	124879465	133118831	243	0.3007	NEUTRAL	NA	22	"ADCY8,ASAP1,EFR3A,FAM49B,FAM84B,FER1L6,GSDMC,HHLA1,KIAA0196,MTSS1,MYC,NDUFB9,NSMCE2,OC90,POU5F1B,RNF139,SQLE,TATDN1,TMEM65,TRIB1,TRMT12,ZNF572"
TCGA.AA.A01Q.01A	8	125072391	125574995	34	0.307	NEUTRAL	NA	7	"FER1L6,MTSS1,NDUFB9,RNF139,TATDN1,TMEM65,TRMT12"
TCGA.AG.3909.01A	8	125326153	125561973	24	0.265	NEUTRAL	NA	5	"NDUFB9,RNF139,TATDN1,TMEM65,TRMT12"
TCGA.AA.A00N.01A	8	125384128	129021094	90	-0.061	NEUTRAL	NA	14	"FAM84B,KIAA0196,MTSS1,MYC,NDUFB9,NSMCE2,POU5F1B,RNF139,SQLE,TATDN1,TMEM65,TRIB1,TRMT12,ZNF572"
TCGA.CA.5797	8	125406398	146293413	7725	0.3374	NEUTRAL	NA	129	Too-Many
TCGA.AG.4009.01A	8	125463192	125506022	7	-0.3429	NEUTRAL	NA	3	"RNF139,TATDN1,TRMT12"
TCGA.AG.A00C.01A	8	125463192	128752595	85	0.106	NEUTRAL	NA	13	"FAM84B,KIAA0196,MTSS1,MYC,NDUFB9,NSMCE2,POU5F1B,RNF139,SQLE,TATDN1,TRIB1,TRMT12,ZNF572"
TCGA.CK.5914.01A	8	125498070	125561973	14	0.0671	NEUTRAL	NA	3	"NDUFB9,RNF139,TATDN1"
TCGA.AG.4009.01A	8	125507651	141856651	489	0.344	NEUTRAL	NA	36	"ADCY8,AGO2,ASAP1,CHRAC1,COL22A1,EFR3A,FAM135B,FAM49B,FAM84B,GSDMC,HHLA1,KCNK9,KCNQ3,KHDRBS3,KIAA0196,LRRC6,MTSS1,MYC,NDRG1,NDUFB9,NSMCE2,OC90,PHF20L1,POU5F1B,PTK2,SLA,SQLE,ST3GAL1,TATDN1,TG,TMEM71,TRAPPC9,TRIB1,WISP1,ZFAT,ZNF572"
TCGA.AA.A00Q.01A	8	125565201	125740063	14	-0.3119	NEUTRAL	NA	1	MTSS1
TCGA.AA.A01Q.01A	8	125577862	133837226	195	0.0265	NEUTRAL	NA	20	"ADCY8,ASAP1,EFR3A,FAM49B,FAM84B,GSDMC,HHLA1,KCNQ3,KIAA0196,LRRC6,MTSS1,MYC,NSMCE2,OC90,PHF20L1,POU5F1B,SQLE,TMEM71,TRIB1,ZNF572"
TCGA.AG.3909.01A	8	125716314	129021094	58	0.171	NEUTRAL	NA	9	"FAM84B,KIAA0196,MTSS1,MYC,NSMCE2,POU5F1B,SQLE,TRIB1,ZNF572"
TCGA.AA.A010.01A	8	125987836	126023727	9	0.325	NEUTRAL	NA	2	"SQLE,ZNF572"
TCGA.CK.5914.01A	8	125987836	126023727	9	-0.4398	NEUTRAL	NA	2	"SQLE,ZNF572"
TCGA.AA.A00Q.01A	8	125987836	133880308	190	0.1037	NEUTRAL	NA	20	"ADCY8,ASAP1,EFR3A,FAM49B,FAM84B,GSDMC,HHLA1,KCNQ3,KIAA0196,LRRC6,MYC,NSMCE2,OC90,PHF20L1,POU5F1B,SQLE,TG,TMEM71,TRIB1,ZNF572"
TCGA.AA.A010.01A	8	126030264	126051031	9	-0.3034	NEUTRAL	NA	2	"KIAA0196,SQLE"
TCGA.CK.5914.01A	8	126030264	129021094	48	0.3771	NEUTRAL	NA	7	"FAM84B,KIAA0196,MYC,NSMCE2,POU5F1B,SQLE,TRIB1"
TCGA.AA.A010.01A	8	126051999	126075715	12	0.3415	NEUTRAL	NA	1	KIAA0196
TCGA.AA.3941	8	126097457	126177136	13	0.0462	NEUTRAL	NA	2	"KIAA0196,NSMCE2"
TCGA.A6.2677	8	126645636	127040571	136	0.2938	NEUTRAL	NA	0	None
TCGA.AA.3850	8	126705305	128571758	740	-0.24645	NEUTRAL	NA	2	"FAM84B,POU5F1B"
TCGA.A6.A56B	8	126705305	146293413	7206	0.3009	NEUTRAL	NA	119	Too-Many
TCGA.AA.3872	8	126782047	126789339	6	0.0835	NEUTRAL	NA	0	None
TCGA.AA.3941	8	126782047	128617079	735	0.2339	NEUTRAL	NA	2	"FAM84B,POU5F1B"
TCGA.AD.6899	8	127293472	127311663	7	-0.3471	NEUTRAL	NA	0	None
TCGA.AA.3982	8	127908176	127918070	4	-0.184	NEUTRAL	NA	0	None
TCGA.AA.3872	8	128052254	128095155	18	-0.0922	NEUTRAL	NA	0	None
TCGA.AA.3872	8	128281707	128283181	3	-0.2145	NEUTRAL	NA	0	None
TCGA.AA.3516	8	128340373	146293413	6603	0.0069	NEUTRAL	NA	118	Too-Many
TCGA.AA.3715	8	128406998	128415733	12	-0.4164	NEUTRAL	NA	0	None
TCGA.AA.3715	8	128420557	146293413	6575	0.189	NEUTRAL	NA	118	Too-Many
TCGA.AA.3850	8	128571854	129138662	272	0.33825	NEUTRAL	NA	1	MYC
TCGA.DM.A0XD	8	128630520	145682114	6348	0.0629	NEUTRAL	NA	98	"ADCK5,ADCY8,ADGRB1,AGO2,ARC,ASAP1,BOP1,C8orf31,CCDC166,CHRAC1,COL22A1,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EFR3A,EPPK1,EXOSC4,FAM135B,FAM49B,FAM83H,FBXL6,GLI4,GML,GPAA1,GPIHBP1,GPR20,GRINA,GSDMC,GSDMD,HGH1,HHLA1,HSF1,JRK,KCNK9,KCNQ3,KHDRBS3,LRRC6,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MROH1,MROH5,MROH6,MYC,NAPRT,NDRG1,NRBP2,OC90,OPLAH,PARP10,PHF20L1,PLEC,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RHPN1,SCRIB,SCRT1,SCX,SHARPIN,SLA,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,ST3GAL1,TG,THEM6,TIGD5,TMEM249,TMEM71,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,WISP1,ZC3H3,ZFAT,ZFP41,ZNF623,ZNF696,ZNF707"
TCGA.CA.5254	8	128740967	135054788	2652	0.3147	NEUTRAL	NA	17	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC,HHLA1,KCNQ3,LRRC6,MYC,NDRG1,OC90,PHF20L1,SLA,ST3GAL1,TG,TMEM71,WISP1"
TCGA.AF.A56K	8	128762863	142041699	5583	-0.0189	NEUTRAL	NA	25	"ADCY8,AGO2,ASAP1,CHRAC1,COL22A1,EFR3A,FAM135B,FAM49B,GSDMC,HHLA1,KCNK9,KCNQ3,KHDRBS3,LRRC6,NDRG1,OC90,PHF20L1,PTK2,SLA,ST3GAL1,TG,TMEM71,TRAPPC9,WISP1,ZFAT"
TCGA.DM.A28A	8	128801947	146293413	6384	-0.3092	NEUTRAL	NA	116	Too-Many
TCGA.AA.A010.01A	8	128808165	133759138	155	0.1001	NEUTRAL	NA	10	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC,HHLA1,KCNQ3,LRRC6,OC90,TMEM71"
TCGA.AG.3731	8	128822708	146293413	6389	0.29	NEUTRAL	NA	116	Too-Many
TCGA.AA.3875	8	128858688	146293413	6381	0.1703	NEUTRAL	NA	116	Too-Many
TCGA.AG.A00C.01A	8	128972809	133759138	135	-0.192	NEUTRAL	NA	10	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC,HHLA1,KCNQ3,LRRC6,OC90,TMEM71"
TCGA.AG.A02X.01A	8	128972809	146279416	677	-0.3617	NEUTRAL	NA	116	Too-Many
TCGA.AY.A8YK	8	129027694	146293413	6314	-0.4473	NEUTRAL	NA	116	Too-Many
TCGA.AG.3727	8	129103031	133740898	1805	-0.0111	NEUTRAL	NA	10	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC,HHLA1,KCNQ3,LRRC6,OC90,TMEM71"
TCGA.AA.3982	8	129133258	129143679	6	0.3699	NEUTRAL	NA	0	None
TCGA.AA.3941	8	129138662	129143679	5	-0.4358	NEUTRAL	NA	0	None
TCGA.AA.3850	8	129141855	129493656	186	-0.20355	NEUTRAL	NA	0	None
TCGA.AH.6549.01A	8	129162300	142146704	444	-0.0534	NEUTRAL	NA	26	"ADCY8,AGO2,ASAP1,CHRAC1,COL22A1,DENND3,EFR3A,FAM135B,FAM49B,GSDMC,HHLA1,KCNK9,KCNQ3,KHDRBS3,LRRC6,NDRG1,OC90,PHF20L1,PTK2,SLA,ST3GAL1,TG,TMEM71,TRAPPC9,WISP1,ZFAT"
TCGA.AA.3844	8	129186265	130527783	507	-0.4691	NEUTRAL	NA	0	None
TCGA.AA.3941	8	129190289	130635279	543	0.0466	NEUTRAL	NA	0	None
TCGA.A6.2677	8	129492317	141751711	4845	0.1496	NEUTRAL	NA	25	"ADCY8,AGO2,ASAP1,CHRAC1,COL22A1,EFR3A,FAM135B,FAM49B,GSDMC,HHLA1,KCNK9,KCNQ3,KHDRBS3,LRRC6,NDRG1,OC90,PHF20L1,PTK2,SLA,ST3GAL1,TG,TMEM71,TRAPPC9,WISP1,ZFAT"
TCGA.AZ.6601	8	129778605	146293413	5947	-0.0071	NEUTRAL	NA	116	Too-Many
TCGA.A6.3807	8	130202097	146293413	5798	-0.2063	NEUTRAL	NA	116	Too-Many
TCGA.AZ.6603	8	130316145	146293413	5781	0.2458	NEUTRAL	NA	116	Too-Many
TCGA.AA.3850	8	130349099	130411445	38	0.07275	NEUTRAL	NA	0	None
TCGA.G4.6311	8	130390570	130708159	130	-0.085	NEUTRAL	NA	0	None
TCGA.AG.3726	8	130426225	130827575	142	0.0217	NEUTRAL	NA	1	GSDMC
TCGA.AA.3850	8	130458864	130499894	21	0.20475	NEUTRAL	NA	0	None
TCGA.AA.3844	8	130528076	131229179	189	-0.0471	NEUTRAL	NA	3	"ASAP1,FAM49B,GSDMC"
TCGA.AA.3850	8	130530326	130624120	25	0.11735	NEUTRAL	NA	0	None
TCGA.AA.3850	8	130639539	130829036	70	0.01035	NEUTRAL	NA	1	GSDMC
TCGA.AA.3967.01A	8	130760695	146279416	860	-0.3042	NEUTRAL	NA	116	Too-Many
TCGA.AA.3850	8	131182084	131256677	23	-0.38305	NEUTRAL	NA	1	ASAP1
TCGA.AA.3941	8	131234779	131256397	10	-0.422	NEUTRAL	NA	1	ASAP1
TCGA.AA.3982	8	131234779	131286910	24	0.3605	NEUTRAL	NA	1	ASAP1
TCGA.AA.3496	8	131248223	131378424	48	-0.1776	NEUTRAL	NA	1	ASAP1
TCGA.AA.3850	8	131258534	131826790	271	0.08345	NEUTRAL	NA	2	"ADCY8,ASAP1"
TCGA.AA.3844	8	131258534	131878993	298	-0.0751	NEUTRAL	NA	2	"ADCY8,ASAP1"
TCGA.A6.2686	8	131348359	146293413	5438	0.1513	NEUTRAL	NA	114	Too-Many
TCGA.CK.6751	8	131524620	146293413	5360	-0.0035	NEUTRAL	NA	113	Too-Many
TCGA.AG.3726	8	131793700	131909207	78	-0.0054	NEUTRAL	NA	1	ADCY8
TCGA.AA.3941	8	131833035	133027399	434	-0.0534	NEUTRAL	NA	2	"ADCY8,EFR3A"
TCGA.AA.3844	8	131879067	133005853	404	-0.4555	NEUTRAL	NA	2	"ADCY8,EFR3A"
TCGA.AG.3726	8	131912051	132112956	89	0.3567	NEUTRAL	NA	1	ADCY8
TCGA.AG.3909.01A	8	132051601	133022989	23	0.3328	NEUTRAL	NA	2	"ADCY8,EFR3A"
TCGA.AG.3726	8	132119319	132189423	24	-0.102	NEUTRAL	NA	0	None
TCGA.AY.6196	8	132157796	146293413	5010	-0.1037	NEUTRAL	NA	112	Too-Many
TCGA.EI.6883	8	132157948	132328177	42	0.35	NEUTRAL	NA	0	None
TCGA.AA.3955	8	132230062	146293413	5050	0.3457	NEUTRAL	NA	112	Too-Many
TCGA.AD.6901	8	132250428	138912056	2917	-0.2786	NEUTRAL	NA	14	"EFR3A,HHLA1,KCNQ3,KHDRBS3,LRRC6,NDRG1,OC90,PHF20L1,SLA,ST3GAL1,TG,TMEM71,WISP1,ZFAT"
TCGA.G4.6299	8	132508758	146293413	4952	0.2671	NEUTRAL	NA	112	Too-Many
TCGA.AA.3850	8	132856487	132923441	22	0.24945	NEUTRAL	NA	1	EFR3A
TCGA.D5.6930	8	132910349	134229534	637	-0.3461	NEUTRAL	NA	10	"EFR3A,HHLA1,KCNQ3,LRRC6,OC90,PHF20L1,SLA,TG,TMEM71,WISP1"
TCGA.AA.3872	8	132926769	132946577	8	-0.4101	NEUTRAL	NA	1	EFR3A
TCGA.AG.A032.01A	8	132980494	134232814	137	-0.2316	NEUTRAL	NA	10	"EFR3A,HHLA1,KCNQ3,LRRC6,OC90,PHF20L1,SLA,TG,TMEM71,WISP1"
TCGA.F5.6810	8	132983981	133106064	53	-0.1974	NEUTRAL	NA	3	"EFR3A,HHLA1,OC90"
TCGA.AA.3844	8	133006925	133808414	364	-0.0811	NEUTRAL	NA	7	"EFR3A,HHLA1,KCNQ3,LRRC6,OC90,PHF20L1,TMEM71"
TCGA.AA.3850	8	133027399	133777118	352	0.05735	NEUTRAL	NA	5	"HHLA1,KCNQ3,LRRC6,OC90,TMEM71"
TCGA.F5.6810	8	133106114	146293413	4737	0.1339	NEUTRAL	NA	110	Too-Many
TCGA.AG.A01W.01A	8	133120144	133696399	48	0.0141	NEUTRAL	NA	2	"KCNQ3,LRRC6"
TCGA.AG.3594	8	133415817	133591951	81	-0.0105	NEUTRAL	NA	2	"KCNQ3,LRRC6"
TCGA.DM.A28M.01A	8	133634805	133856359	33	0.3329	NEUTRAL	NA	3	"LRRC6,PHF20L1,TMEM71"
TCGA.AG.3909.01A	8	133650132	133826875	20	-0.001	NEUTRAL	NA	3	"LRRC6,PHF20L1,TMEM71"
TCGA.AA.3862.01A	8	133650132	139610911	164	0.0019	NEUTRAL	NA	12	"COL22A1,FAM135B,KHDRBS3,LRRC6,NDRG1,PHF20L1,SLA,ST3GAL1,TG,TMEM71,WISP1,ZFAT"
TCGA.AA.A00N.01A	8	133669013	133856359	29	0.1568	NEUTRAL	NA	3	"LRRC6,PHF20L1,TMEM71"
TCGA.CK.5914.01A	8	133723134	133790029	9	-0.2702	NEUTRAL	NA	2	"PHF20L1,TMEM71"
TCGA.AG.A01W.01A	8	133756821	133885200	14	0.2556	NEUTRAL	NA	3	"PHF20L1,TG,TMEM71"
TCGA.AG.A00C.01A	8	133763984	133811276	7	0.3561	NEUTRAL	NA	2	"PHF20L1,TMEM71"
TCGA.AA.3982	8	133798918	133808414	7	0.2689	NEUTRAL	NA	1	PHF20L1
TCGA.AG.A00C.01A	8	133816023	134232814	73	-0.2532	NEUTRAL	NA	4	"PHF20L1,SLA,TG,WISP1"
TCGA.AA.3982	8	133830342	133868673	10	0.1289	NEUTRAL	NA	1	PHF20L1
TCGA.AA.3844	8	133830342	133890897	18	-0.374	NEUTRAL	NA	2	"PHF20L1,TG"
TCGA.CK.4948.01B	8	133857979	146115612	805	0.3311	NEUTRAL	NA	104	Too-Many
TCGA.DM.A28M.01A	8	133857979	146279416	814	-0.1466	NEUTRAL	NA	106	Too-Many
TCGA.AA.3850	8	133868673	134709939	513	0.34035	NEUTRAL	NA	5	"NDRG1,SLA,ST3GAL1,TG,WISP1"
TCGA.AA.3509.01A	8	133879179	146279416	809	0.3674	NEUTRAL	NA	105	Too-Many
TCGA.AA.A00Q.01A	8	133881922	134487955	80	-0.1852	NEUTRAL	NA	5	"NDRG1,SLA,ST3GAL1,TG,WISP1"
TCGA.AA.3844	8	133891987	134783001	532	0.1163	NEUTRAL	NA	5	"NDRG1,SLA,ST3GAL1,TG,WISP1"
TCGA.AA.A01Q.01A	8	133910372	134237586	47	0.0579	NEUTRAL	NA	3	"SLA,TG,WISP1"
TCGA.AG.A01W.01A	8	133913616	142255846	292	0.1801	NEUTRAL	NA	16	"AGO2,CHRAC1,COL22A1,DENND3,FAM135B,KCNK9,KHDRBS3,NDRG1,PTK2,SLA,SLC45A4,ST3GAL1,TG,TRAPPC9,WISP1,ZFAT"
TCGA.AG.3594	8	134084166	134212129	84	0.295	NEUTRAL	NA	3	"SLA,TG,WISP1"
TCGA.AG.3594	8	134214190	142484620	3524	-0.055	NEUTRAL	NA	17	"AGO2,CHRAC1,COL22A1,DENND3,FAM135B,GPR20,KCNK9,KHDRBS3,MROH5,NDRG1,PTK2,PTP4A3,SLC45A4,ST3GAL1,TRAPPC9,WISP1,ZFAT"
TCGA.AA.A00N.01A	8	134232814	134296427	18	-0.4953	NEUTRAL	NA	2	"NDRG1,WISP1"
TCGA.CK.5914.01A	8	134232814	136560980	46	0.2121	NEUTRAL	NA	5	"KHDRBS3,NDRG1,ST3GAL1,WISP1,ZFAT"
TCGA.D5.6930	8	134235815	146293413	4165	-0.0225	NEUTRAL	NA	103	Too-Many
TCGA.AG.A032.01A	8	134237586	146279416	374	0.2387	NEUTRAL	NA	103	Too-Many
TCGA.AA.A00O.01A	8	134260043	146279416	391	-0.1142	NEUTRAL	NA	102	Too-Many
TCGA.AG.A00C.01A	8	134260890	146279416	513	0.0085	NEUTRAL	NA	102	Too-Many
TCGA.AG.3909.01A	8	134268966	139323024	56	0.2672	NEUTRAL	NA	5	"FAM135B,KHDRBS3,NDRG1,ST3GAL1,ZFAT"
TCGA.AG.3726	8	134300365	134339265	15	0.0106	NEUTRAL	NA	1	NDRG1
TCGA.AA.A01Q.01A	8	134478100	139160716	21	-0.021	NEUTRAL	NA	4	"FAM135B,KHDRBS3,ST3GAL1,ZFAT"
TCGA.AF.2692	8	134633280	146293413	3942	0.0819	NEUTRAL	NA	100	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KHDRBS3,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFAT,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.3726	8	134682941	134836572	67	-0.0649	NEUTRAL	NA	0	None
TCGA.AA.3850	8	134714461	135407779	310	-0.15915	NEUTRAL	NA	0	None
TCGA.AA.3941	8	134740981	135121336	164	0.3648	NEUTRAL	NA	0	None
TCGA.AA.3844	8	134783104	135401409	283	-0.1957	NEUTRAL	NA	0	None
TCGA.AG.3726	8	134838384	136921298	868	0.357	NEUTRAL	NA	2	"KHDRBS3,ZFAT"
TCGA.CA.5254	8	135062573	146293413	3729	0.2936	NEUTRAL	NA	100	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KHDRBS3,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFAT,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3982	8	135116638	135136656	7	-0.0508	NEUTRAL	NA	0	None
TCGA.D5.6923	8	135116638	135466270	162	-0.0031	NEUTRAL	NA	0	None
TCGA.AA.3811	8	135121336	135253397	74	-0.0924	NEUTRAL	NA	0	None
TCGA.AA.3941	8	135137584	135407779	126	0.2003	NEUTRAL	NA	0	None
TCGA.AA.3811	8	135253545	137146348	797	0.3101	NEUTRAL	NA	2	"KHDRBS3,ZFAT"
TCGA.AA.3844	8	135407779	135782980	208	0.0979	NEUTRAL	NA	1	ZFAT
TCGA.AA.3850	8	135413553	135782980	206	0.32525	NEUTRAL	NA	1	ZFAT
TCGA.AA.A00Q.01A	8	135524668	144802337	305	0.1362	NEUTRAL	NA	50	"ADGRB1,AGO2,ARC,C8orf31,CCDC166,CHRAC1,COL22A1,CYP11B1,CYP11B2,DENND3,EEF1D,FAM135B,GLI4,GML,GPIHBP1,GPR20,GSDMD,JRK,KCNK9,KHDRBS3,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAFA,MAPK15,MROH5,MROH6,NAPRT,PSCA,PTK2,PTP4A3,PYCRL,RHPN1,SLC45A4,SLURP1,THEM6,TIGD5,TOP1MT,TRAPPC9,TSNARE1,TSTA3,ZC3H3,ZFAT,ZFP41,ZNF623,ZNF696,ZNF707"
TCGA.D5.6923	8	135653904	135654741	4	-0.4892	NEUTRAL	NA	1	ZFAT
TCGA.AA.3850	8	135789217	137146809	534	-0.06605	NEUTRAL	NA	1	KHDRBS3
TCGA.AA.3844	8	135789217	139333859	1478	-0.3154	NEUTRAL	NA	2	"FAM135B,KHDRBS3"
TCGA.A6.6653	8	135792557	146293413	3375	-0.0486	NEUTRAL	NA	99	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KHDRBS3,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.4008	8	136220934	145955542	3131	-0.141	NEUTRAL	NA	91	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CHRAC1,COL22A1,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KHDRBS3,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF251,ZNF623,ZNF696,ZNF707"
TCGA.AG.3592	8	136288437	146293413	3194	0.2019	NEUTRAL	NA	99	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KHDRBS3,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3941	8	136294328	136317084	7	0.219	NEUTRAL	NA	0	None
TCGA.AA.3941	8	136323280	136415445	27	0.2766	NEUTRAL	NA	0	None
TCGA.AA.3941	8	136475037	136478554	4	-0.4976	NEUTRAL	NA	1	KHDRBS3
TCGA.EI.7004	8	136489778	146293413	3118	-0.3706	NEUTRAL	NA	99	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KHDRBS3,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.DC.4745	8	136767238	138097929	522	-0.0969	NEUTRAL	NA	0	None
TCGA.AA.3941	8	136874322	136987790	70	0.2145	NEUTRAL	NA	0	None
TCGA.AG.3726	8	136923252	137023805	67	-0.0515	NEUTRAL	NA	0	None
TCGA.AG.3726	8	137024062	141559124	2019	0.371	NEUTRAL	NA	6	"AGO2,CHRAC1,COL22A1,FAM135B,KCNK9,TRAPPC9"
TCGA.AA.3941	8	137033951	137113048	43	0.0229	NEUTRAL	NA	0	None
TCGA.AA.3941	8	137142911	138849523	679	-0.182	NEUTRAL	NA	0	None
TCGA.AA.3811	8	137148084	138493051	504	0.066	NEUTRAL	NA	0	None
TCGA.A6.6648	8	137677822	137856313	64	-0.1863	NEUTRAL	NA	0	None
TCGA.DM.A28F	8	137687954	137825972	53	-0.1111	NEUTRAL	NA	0	None
TCGA.A6.6648	8	137862434	146293413	2587	0.3052	NEUTRAL	NA	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3982	8	138456311	138471899	16	0.0037	NEUTRAL	NA	0	None
TCGA.AA.3870	8	138493051	138493982	4	-0.4966	NEUTRAL	NA	0	None
TCGA.AA.3870	8	138499827	138612205	69	0.2223	NEUTRAL	NA	0	None
TCGA.AA.3811	8	138499827	140611753	1128	0.2581	NEUTRAL	NA	2	"COL22A1,FAM135B"
TCGA.AZ.6606	8	138657097	140007542	669	0.3142	NEUTRAL	NA	2	"COL22A1,FAM135B"
TCGA.AA.3982	8	138675097	138692558	6	-0.2417	NEUTRAL	NA	0	None
TCGA.AA.3982	8	138773402	138776166	12	-0.152	NEUTRAL	NA	0	None
TCGA.AA.3850	8	138849165	139670983	412	-0.13335	NEUTRAL	NA	2	"COL22A1,FAM135B"
TCGA.AA.3941	8	138852319	139669204	410	0.2934	NEUTRAL	NA	2	"COL22A1,FAM135B"
TCGA.CM.6675	8	138863137	146293413	2157	-0.0074	NEUTRAL	NA	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.NH.A8F8	8	138863356	146293413	2158	0.3334	NEUTRAL	NA	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AD.6901	8	138914028	146293413	2123	0.2176	NEUTRAL	NA	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.DM.A1D0	8	138920571	138922246	3	-0.3519	NEUTRAL	NA	0	None
TCGA.AA.A01Q.01A	8	139163415	139707037	35	0.3103	NEUTRAL	NA	2	"COL22A1,FAM135B"
TCGA.DM.A28H	8	139178005	139197979	15	0.3408	NEUTRAL	NA	1	FAM135B
TCGA.AA.3844	8	139340810	140549082	628	-0.0924	NEUTRAL	NA	2	"COL22A1,FAM135B"
TCGA.AA.3982	8	139422906	139453935	16	0.1793	NEUTRAL	NA	1	FAM135B
TCGA.AA.A02E.01A	8	139658799	146279416	327	0.3726	NEUTRAL	NA	97	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3850	8	139672601	140066844	213	0.25615	NEUTRAL	NA	1	COL22A1
TCGA.AA.A01Q.01A	8	139712285	141468348	56	-0.0317	NEUTRAL	NA	3	"COL22A1,KCNK9,TRAPPC9"
TCGA.AG.A01N.01A	8	139712285	141669566	71	0.3602	NEUTRAL	NA	6	"AGO2,CHRAC1,COL22A1,KCNK9,PTK2,TRAPPC9"
TCGA.AA.3862.01A	8	139734248	142490403	159	-0.204	NEUTRAL	NA	11	"AGO2,CHRAC1,COL22A1,DENND3,GPR20,KCNK9,MROH5,PTK2,PTP4A3,SLC45A4,TRAPPC9"
TCGA.DC.4745	8	139790137	140875457	578	-0.1043	NEUTRAL	NA	3	"COL22A1,KCNK9,TRAPPC9"
TCGA.AG.3909.01A	8	139856263	141297655	14	0.0624	NEUTRAL	NA	3	"COL22A1,KCNK9,TRAPPC9"
TCGA.AA.A00N.01A	8	139856263	141669566	50	-0.1818	NEUTRAL	NA	6	"AGO2,CHRAC1,COL22A1,KCNK9,PTK2,TRAPPC9"
TCGA.AZ.6606	8	140009733	146293413	1573	-0.1265	NEUTRAL	NA	96	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3941	8	140076067	140127841	29	0.2395	NEUTRAL	NA	0	None
TCGA.AA.3850	8	140076067	140203784	70	-0.35005	NEUTRAL	NA	0	None
TCGA.AA.3941	8	140145218	140259196	55	0.2836	NEUTRAL	NA	0	None
TCGA.D5.6923	8	140203784	146293413	1466	-0.0436	NEUTRAL	NA	96	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3850	8	140212018	140602615	257	0.14365	NEUTRAL	NA	0	None
TCGA.AM.5820	8	140508780	141656154	447	0.2707	NEUTRAL	NA	4	"AGO2,CHRAC1,KCNK9,TRAPPC9"
TCGA.AA.3844	8	140553020	141060241	242	0.1512	NEUTRAL	NA	2	"KCNK9,TRAPPC9"
TCGA.AA.3530	8	140602615	146293413	1209	0.308	NEUTRAL	NA	96	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.SS.A7HO	8	140840549	146293413	1112	-0.026	NEUTRAL	NA	95	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.DC.4745	8	140888554	146293413	1101	0.3362	NEUTRAL	NA	95	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.A01Z	8	140932104	141287991	150	-0.0072	NEUTRAL	NA	1	TRAPPC9
TCGA.NH.A50T	8	140957510	146293413	1065	0.0686	NEUTRAL	NA	95	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3844	8	141065731	141113740	19	-0.2674	NEUTRAL	NA	1	TRAPPC9
TCGA.AA.3844	8	141117788	143924051	708	0.2264	NEUTRAL	NA	21	"ADGRB1,AGO2,ARC,CHRAC1,DENND3,GML,GPR20,JRK,LY6D,LY6K,LYNX1,LYPD2,MROH5,PSCA,PTK2,PTP4A3,SLC45A4,SLURP1,THEM6,TRAPPC9,TSNARE1"
TCGA.CK.5914.01A	8	141262849	141521547	17	0.0141	NEUTRAL	NA	2	"CHRAC1,TRAPPC9"
TCGA.AA.A010.01A	8	141521547	143557895	133	-0.1145	NEUTRAL	NA	10	"ADGRB1,AGO2,CHRAC1,DENND3,GPR20,MROH5,PTK2,PTP4A3,SLC45A4,TSNARE1"
TCGA.AG.3726	8	141566310	141834345	52	0.0291	NEUTRAL	NA	2	"AGO2,PTK2"
TCGA.AF.2693	8	141600218	141778433	29	-0.5099	NEUTRAL	NA	2	"AGO2,PTK2"
TCGA.AM.5820	8	141657132	142039099	63	-0.1142	NEUTRAL	NA	1	PTK2
TCGA.AA.A01Q.01A	8	141669566	142146704	32	0.2818	NEUTRAL	NA	2	"DENND3,PTK2"
TCGA.CK.5914.01A	8	141669566	142146704	32	0.3225	NEUTRAL	NA	2	"DENND3,PTK2"
TCGA.AA.3666	8	141670265	141950319	43	-0.464	NEUTRAL	NA	1	PTK2
TCGA.AA.3941	8	141746454	141834345	13	0.1766	NEUTRAL	NA	1	PTK2
TCGA.AF.2693	8	141798230	146293413	851	-0.0536	NEUTRAL	NA	92	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.A6.3808.01A	8	141840497	143620667	106	-0.0105	NEUTRAL	NA	8	"ADGRB1,DENND3,GPR20,MROH5,PTK2,PTP4A3,SLC45A4,TSNARE1"
TCGA.AG.4009.01A	8	141874373	143867003	94	-0.0677	NEUTRAL	NA	17	"ADGRB1,ARC,DENND3,GPR20,JRK,LY6D,LY6K,LYNX1,LYPD2,MROH5,PSCA,PTK2,PTP4A3,SLC45A4,SLURP1,THEM6,TSNARE1"
TCGA.AA.3666	8	141962641	146293413	825	-0.0493	NEUTRAL	NA	92	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.3896	8	141962641	146293413	822	0.3499	NEUTRAL	NA	92	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AF.A56K	8	142041793	146293413	803	-0.2947	NEUTRAL	NA	91	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.3909.01A	8	142148074	142178065	11	-0.0149	NEUTRAL	NA	1	DENND3
TCGA.AA.A00N.01A	8	142148074	143955739	136	-0.4142	NEUTRAL	NA	18	"ADGRB1,ARC,CYP11B1,DENND3,GML,GPR20,JRK,LY6D,LY6K,LYNX1,LYPD2,MROH5,PSCA,PTP4A3,SLC45A4,SLURP1,THEM6,TSNARE1"
TCGA.AH.6549.01A	8	142148074	146279416	534	-0.3589	NEUTRAL	NA	91	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.A023.01A	8	142165911	146279416	208	0.0214	NEUTRAL	NA	91	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.A01N.01A	8	142173382	146279416	252	0.3697	NEUTRAL	NA	91	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.A01K.01A	8	142176242	146279416	187	-0.0278	NEUTRAL	NA	91	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3939.01A	8	142185277	146017111	450	-0.068	NEUTRAL	NA	85	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF251,ZNF34,ZNF623,ZNF696,ZNF707"
TCGA.AA.3930.01A	8	142202410	145731181	390	-0.242	NEUTRAL	NA	76	"ADCK5,ADGRB1,ARC,BOP1,C8orf31,CCDC166,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RHPN1,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF623,ZNF696,ZNF707"
TCGA.AA.A029.01A	8	142225869	146279416	170	0.1137	NEUTRAL	NA	90	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.A01L.01A	8	142231646	143998979	66	0.0419	NEUTRAL	NA	18	"ADGRB1,ARC,CYP11B1,CYP11B2,GML,GPR20,JRK,LY6D,LY6K,LYNX1,LYPD2,MROH5,PSCA,PTP4A3,SLC45A4,SLURP1,THEM6,TSNARE1"
TCGA.AG.A01W.01A	8	142307415	142546636	20	0.1221	NEUTRAL	NA	3	"GPR20,MROH5,PTP4A3"
TCGA.AG.3909.01A	8	142366899	144378298	97	-0.2312	NEUTRAL	NA	24	"ADGRB1,ARC,C8orf31,CYP11B1,CYP11B2,GLI4,GML,GPIHBP1,GPR20,JRK,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MROH5,PSCA,PTP4A3,SLURP1,THEM6,TSNARE1,ZFP41,ZNF696"
TCGA.AA.A01Q.01A	8	142432291	142506391	13	0.1244	NEUTRAL	NA	2	"MROH5,PTP4A3"
TCGA.AG.3906.01A	8	142440999	144620136	114	-0.2508	NEUTRAL	NA	27	"ADGRB1,ARC,C8orf31,CYP11B1,CYP11B2,GLI4,GML,GPIHBP1,JRK,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAFA,MROH5,PSCA,PTP4A3,RHPN1,SLURP1,THEM6,TOP1MT,TSNARE1,ZC3H3,ZFP41,ZNF696"
TCGA.AY.A71X	8	142452508	146293413	682	-0.2267	NEUTRAL	NA	87	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.A01W.01A	8	142559608	143848105	63	0.3059	NEUTRAL	NA	10	"ADGRB1,ARC,JRK,LY6K,LYNX1,LYPD2,PSCA,SLURP1,THEM6,TSNARE1"
TCGA.QG.A5Z2	8	142580647	146293413	621	-0.203	NEUTRAL	NA	86	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AD.6889	8	142604447	146293413	618	-0.1903	NEUTRAL	NA	86	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.DM.A1D9	8	142604447	146293413	616	0.178	NEUTRAL	NA	86	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.G5.6235	8	142604447	146293413	618	0.096	NEUTRAL	NA	86	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.A6.6782	8	142930091	143095435	41	-0.3869	NEUTRAL	NA	0	None
TCGA.A6.6782	8	143095524	146293413	487	0.0802	NEUTRAL	NA	86	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3861.01A	8	143607855	144377859	58	0.0137	NEUTRAL	NA	20	"ADGRB1,ARC,C8orf31,CYP11B1,CYP11B2,GLI4,GML,GPIHBP1,JRK,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,PSCA,SLURP1,THEM6,ZFP41,ZNF696"
TCGA.AA.3862.01A	8	143607855	146279416	339	-0.1288	NEUTRAL	NA	85	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.A01Q.01A	8	143808718	144296861	44	0.0857	NEUTRAL	NA	12	"C8orf31,CYP11B1,CYP11B2,GML,GPIHBP1,LY6D,LY6E,LY6H,LYNX1,LYPD2,SLURP1,THEM6"
TCGA.AA.A010.01A	8	143831649	143955739	16	-0.1148	NEUTRAL	NA	5	"CYP11B1,GML,LY6D,LYNX1,LYPD2"
TCGA.CM.6163	8	143879926	146293413	311	-0.0719	NEUTRAL	NA	75	"ADCK5,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,LY6E,LY6H,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TOP1MT,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3941	8	143924051	143926967	5	-0.0872	NEUTRAL	NA	1	GML
TCGA.AA.3872	8	143925854	143928955	5	-0.3568	NEUTRAL	NA	1	GML
TCGA.AA.3844	8	143926967	146083787	245	0.3287	NEUTRAL	NA	72	"ADCK5,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,LY6E,LY6H,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TOP1MT,TSTA3,VPS28,ZC3H3,ZFP41,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.A00N.01A	8	143993359	144399876	30	-0.4968	NEUTRAL	NA	9	"C8orf31,CYP11B2,GLI4,GPIHBP1,LY6E,LY6H,TOP1MT,ZFP41,ZNF696"
TCGA.AG.4009.01A	8	144102286	144130546	5	-0.0993	NEUTRAL	NA	2	"C8orf31,LY6E"
TCGA.AG.A01L.01A	8	144124360	146032575	159	0.2785	NEUTRAL	NA	66	"ADCK5,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CPSF1,CYC1,CYHR1,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,LY6H,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TOP1MT,TSTA3,VPS28,ZC3H3,ZFP41,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF707"
TCGA.A6.3810.01A	8	144332013	144920823	145	-0.188	NEUTRAL	NA	22	"CCDC166,EEF1D,FAM83H,GLI4,GSDMD,MAFA,MAPK15,MROH6,NAPRT,NRBP2,PUF60,PYCRL,RHPN1,SCRIB,TIGD5,TOP1MT,TSTA3,ZC3H3,ZFP41,ZNF623,ZNF696,ZNF707"
TCGA.AF.3914.01A	8	144403334	145218642	142	-0.366	NEUTRAL	NA	32	"CCDC166,CYC1,EEF1D,EPPK1,EXOSC4,FAM83H,GPAA1,GRINA,GSDMD,HGH1,MAF1,MAFA,MAPK15,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PUF60,PYCRL,RHPN1,SCRIB,SHARPIN,SPATC1,TIGD5,TOP1MT,TSTA3,ZC3H3,ZNF623,ZNF707"
TCGA.AA.A00N.01A	8	144413354	144689073	62	-0.4086	NEUTRAL	NA	10	"EEF1D,GSDMD,MAFA,MROH6,NAPRT,PYCRL,RHPN1,TIGD5,TOP1MT,ZC3H3"
TCGA.AG.3909.01A	8	144413354	144889038	57	0.1386	NEUTRAL	NA	17	"CCDC166,EEF1D,FAM83H,GSDMD,MAFA,MAPK15,MROH6,NAPRT,PYCRL,RHPN1,SCRIB,TIGD5,TOP1MT,TSTA3,ZC3H3,ZNF623,ZNF707"
TCGA.AA.A01Q.01A	8	144416861	144656948	22	-0.0319	NEUTRAL	NA	6	"GSDMD,MAFA,MROH6,RHPN1,TOP1MT,ZC3H3"
TCGA.AG.4009.01A	8	144416861	144800842	42	-0.3104	NEUTRAL	NA	15	"CCDC166,EEF1D,GSDMD,MAFA,MAPK15,MROH6,NAPRT,PYCRL,RHPN1,TIGD5,TOP1MT,TSTA3,ZC3H3,ZNF623,ZNF707"
TCGA.AA.3861.01A	8	144460380	146279416	241	-0.3801	NEUTRAL	NA	64	"ADCK5,ARHGAP39,BOP1,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TSTA3,VPS28,ZC3H3,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF7,ZNF707"
TCGA.AA.A01Q.01A	8	144657545	146112160	213	-0.4721	NEUTRAL	NA	57	"ADCK5,ARHGAP39,BOP1,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAPK15,MFSD3,MROH1,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TSTA3,VPS28,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF7,ZNF707"
TCGA.AG.3906.01A	8	144689073	144773201	11	-0.2404	NEUTRAL	NA	4	"PYCRL,TSTA3,ZNF623,ZNF707"
TCGA.AM.5820	8	144707807	144772843	13	0.0309	NEUTRAL	NA	2	"ZNF623,ZNF707"
TCGA.AA.3518	8	144736660	146293413	160	0.0897	NEUTRAL	NA	53	"ADCK5,ARHGAP39,BOP1,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAPK15,MFSD3,MROH1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,RECQL4,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7,ZNF707"
TCGA.AG.A016.01A	8	144772205	144802638	7	0.1365	NEUTRAL	NA	3	"CCDC166,MAPK15,ZNF707"
TCGA.AG.A00H.01A	8	144775810	146279416	126	0.3648	NEUTRAL	NA	53	"ADCK5,ARHGAP39,BOP1,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAPK15,MFSD3,MROH1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,RECQL4,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7,ZNF707"
TCGA.AF.2690	8	144779717	145794663	72	0.1643	NEUTRAL	NA	43	"ADCK5,ARHGAP39,BOP1,C8orf82,CCDC166,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAPK15,MFSD3,MROH1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,RECQL4,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28"
TCGA.AA.A00N.01A	8	144788848	145830859	252	-0.4386	NEUTRAL	NA	43	"ADCK5,ARHGAP39,BOP1,C8orf82,CCDC166,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAPK15,MFSD3,MROH1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,RECQL4,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28"
TCGA.AG.A01W.01A	8	144803139	144876193	15	-0.1027	NEUTRAL	NA	3	"FAM83H,MAPK15,SCRIB"
TCGA.AA.A02K.01A	8	144808065	145011096	46	-0.3624	NEUTRAL	NA	6	"EPPK1,FAM83H,NRBP2,PLEC,PUF60,SCRIB"
TCGA.AA.A00Q.01A	8	144873296	144894385	14	-0.1963	NEUTRAL	NA	1	SCRIB
TCGA.AG.3909.01A	8	144889667	146279416	166	-0.3683	NEUTRAL	NA	49	"ADCK5,ARHGAP39,BOP1,C8orf33,C8orf82,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MFSD3,MROH1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,RECQL4,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.A00Q.01A	8	144895035	145830859	113	0.2874	NEUTRAL	NA	40	"ADCK5,ARHGAP39,BOP1,C8orf82,CPSF1,CYC1,CYHR1,DGAT1,EPPK1,EXOSC4,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MFSD3,MROH1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,RECQL4,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28"
TCGA.A6.3810.01A	8	144940171	145017917	25	-0.4722	NEUTRAL	NA	2	"EPPK1,PLEC"
TCGA.AG.3906.01A	8	145003535	145161708	32	0.0881	NEUTRAL	NA	10	"CYC1,EXOSC4,GPAA1,GRINA,MAF1,OPLAH,PARP10,PLEC,SHARPIN,SPATC1"
TCGA.AG.3891.01A	8	145011095	145277960	43	0.1748	NEUTRAL	NA	12	"CYC1,EXOSC4,GPAA1,GRINA,HGH1,MAF1,MROH1,OPLAH,PARP10,PLEC,SHARPIN,SPATC1"
TCGA.AA.A02K.01A	8	145012268	145106177	19	0.1	NEUTRAL	NA	5	"GRINA,OPLAH,PARP10,PLEC,SPATC1"
TCGA.A6.3810.01A	8	145018727	146114919	211	-0.2031	NEUTRAL	NA	43	"ADCK5,ARHGAP39,BOP1,C8orf82,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EXOSC4,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MFSD3,MROH1,OPLAH,PARP10,PLEC,PPP1R16A,RECQL4,RPL8,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.A02K.01A	8	145106623	145133601	8	-0.4642	NEUTRAL	NA	2	"EXOSC4,OPLAH"
TCGA.AA.A02K.01A	8	145134796	145772474	118	-0.006	NEUTRAL	NA	31	"ADCK5,ARHGAP39,BOP1,C8orf82,CPSF1,CYC1,CYHR1,DGAT1,EXOSC4,FBXL6,FOXH1,GPAA1,GPT,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MFSD3,MROH1,PPP1R16A,RECQL4,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,TMEM249,TONSL,VPS28"
TCGA.AA.A010.01A	8	145223171	145277960	11	0.2066	NEUTRAL	NA	1	MROH1
TCGA.AG.4021	8	145531604	145601351	8	-0.0596	NEUTRAL	NA	7	"ADCK5,DGAT1,FBXL6,HSF1,SCRT1,SLC52A2,TMEM249"
TCGA.AG.3906.01A	8	145603029	145666074	25	0.1108	NEUTRAL	NA	5	"ADCK5,CPSF1,SLC39A4,TONSL,VPS28"
TCGA.AF.3914.01A	8	145603029	146279416	107	0.0359	NEUTRAL	NA	25	"ADCK5,ARHGAP39,C8orf33,C8orf82,COMMD5,CPSF1,CYHR1,FOXH1,GPT,KIFC2,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,RPL8,SLC39A4,TONSL,VPS28,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.A6.5660	8	145653005	145744428	15	0.2271	NEUTRAL	NA	10	"CYHR1,FOXH1,GPT,KIFC2,LRRC14,MFSD3,PPP1R16A,RECQL4,TONSL,VPS28"
TCGA.CA.5256	8	145702006	146293413	88	0.2854	NEUTRAL	NA	17	"ARHGAP39,C8orf33,C8orf82,COMMD5,GPT,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.DM.A0XD	8	145702006	146293413	88	0.0785	NEUTRAL	NA	17	"ARHGAP39,C8orf33,C8orf82,COMMD5,GPT,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.DY.A1DF	8	145710985	146293413	87	0.2174	NEUTRAL	NA	17	"ARHGAP39,C8orf33,C8orf82,COMMD5,GPT,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.3605.01A	8	145726484	146156094	7	0.3589	NEUTRAL	NA	16	"ARHGAP39,C8orf82,COMMD5,GPT,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.3891.01A	8	145736776	145759468	13	-0.1137	NEUTRAL	NA	5	"ARHGAP39,C8orf82,LRRC14,LRRC24,RECQL4"
TCGA.AG.3906.01A	8	145739265	146171369	44	-0.2527	NEUTRAL	NA	13	"ARHGAP39,C8orf82,COMMD5,LRRC14,LRRC24,RECQL4,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.A6.3808.01A	8	145757634	146279416	44	-0.2463	NEUTRAL	NA	10	"ARHGAP39,C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.4009.01A	8	145763052	146171369	35	-0.0631	NEUTRAL	NA	9	"ARHGAP39,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.3891.01A	8	145763052	146279416	39	0.3745	NEUTRAL	NA	10	"ARHGAP39,C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AM.5820	8	145764543	146045453	27	0.3474	NEUTRAL	NA	5	"ARHGAP39,RPL8,ZNF251,ZNF34,ZNF517"
TCGA.AA.3930.01A	8	145770651	146279416	40	0.0992	NEUTRAL	NA	10	"ARHGAP39,C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.A02K.01A	8	145780890	146171380	38	0.2456	NEUTRAL	NA	9	"ARHGAP39,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.A010.01A	8	145806241	145980019	7	0.1831	NEUTRAL	NA	2	"ARHGAP39,ZNF251"
TCGA.AG.A01W.01A	8	145917811	145976389	11	0.2948	NEUTRAL	NA	1	ZNF251
TCGA.AA.A00Q.01A	8	146015167	146279416	24	-0.1785	NEUTRAL	NA	7	"C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF517,ZNF7"
TCGA.AA.3939.01A	8	146028220	146279416	20	0.2986	NEUTRAL	NA	6	"C8orf33,COMMD5,ZNF16,ZNF250,ZNF517,ZNF7"
TCGA.AG.A01W.01A	8	146033532	146250167	16	0.1563	NEUTRAL	NA	5	"COMMD5,ZNF16,ZNF250,ZNF517,ZNF7"
TCGA.AG.A01L.01A	8	146054388	146279416	16	-0.0696	NEUTRAL	NA	5	"C8orf33,COMMD5,ZNF16,ZNF250,ZNF7"
TCGA.AM.5820	8	146056366	146293413	55	0.0732	NEUTRAL	NA	5	"C8orf33,COMMD5,ZNF16,ZNF250,ZNF7"
TCGA.AA.3844	8	146083848	146293413	44	-0.1227	NEUTRAL	NA	3	"C8orf33,ZNF16,ZNF250"
TCGA.AA.A00N.01A	8	146114919	146279416	8	-0.3176	NEUTRAL	NA	3	"C8orf33,ZNF16,ZNF250"
TCGA.AA.A01Q.01A	8	146114919	146279416	8	0.1278	NEUTRAL	NA	3	"C8orf33,ZNF16,ZNF250"
TCGA.A6.3810.01A	8	146115326	146279416	7	0.2873	NEUTRAL	NA	3	"C8orf33,ZNF16,ZNF250"
TCGA.AA.3850	8	146203345	146293413	14	-0.14985	NEUTRAL	NA	1	C8orf33
TCGA.AA.3941	8	146203345	146293413	14	0.2955	NEUTRAL	NA	1	C8orf33
TCGA.AA.3872	8	146211594	146293413	12	0.0996	NEUTRAL	NA	1	C8orf33
TCGA.AA.3543	8	146231642	146293413	11	0.1965	NEUTRAL	NA	1	C8orf33
TCGA.DM.A0XF	8	146231642	146293413	11	0.2655	NEUTRAL	NA	1	C8orf33
TCGA.AA.3854	8	146239139	146293413	7	0.1136	NEUTRAL	NA	1	C8orf33
TCGA.DY.A1DC	8	146270660	146293413	5	0.2933	NEUTRAL	NA	1	C8orf33
TCGA.AG.A011.01A	8	146277799	146279416	3	-0.0488	NEUTRAL	NA	1	C8orf33
TCGA.D5.5541	8	146290272	146293413	3	-0.158	NEUTRAL	NA	0	None
TCGA.DC.5869	8	146290272	146293413	3	-0.3167	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	9	4815	39076646	1800	-0.0634	NEUTRAL	NA	199	Too-Many
TCGA.F5.6811.01A	9	4815	43762482	1837	-0.0083	NEUTRAL	NA	209	Too-Many
TCGA.DC.6160.01A	9	4815	140229504	7432	-0.0742	NEUTRAL	NA	744	Too-Many
TCGA.CK.5914.01A	9	14815	214478	11	0.1367	NEUTRAL	NA	4	"C9orf66,CBWD1,FOXD4,WASH1"
TCGA.AA.3509.01A	9	14815	2829737	145	0.0159	NEUTRAL	NA	13	"C9orf66,CBWD1,DMRT1,DMRT2,DMRT3,DOCK8,FOXD4,KANK1,KCNV2,KIAA0020,SMARCA2,VLDLR,WASH1"
TCGA.AZ.4684.01A	9	14815	2829737	145	0.0789	NEUTRAL	NA	13	"C9orf66,CBWD1,DMRT1,DMRT2,DMRT3,DOCK8,FOXD4,KANK1,KCNV2,KIAA0020,SMARCA2,VLDLR,WASH1"
TCGA.DM.A28M.01A	9	14815	17415734	670	0.2964	NEUTRAL	NA	55	"AK3,BNC2,C9orf66,C9orf92,CBWD1,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,WASH1,ZDHHC21"
TCGA.A6.3810.01A	9	14815	33988944	1223	-0.1771	NEUTRAL	NA	124	Too-Many
TCGA.CK.4948.01B	9	14815	114415328	4138	-0.0279	NEUTRAL	NA	428	Too-Many
TCGA.AH.6549.01A	9	14815	141109683	7398	-0.3987	NEUTRAL	NA	755	Too-Many
TCGA.CM.4750.01A	9	14815	141109683	7451	-0.5082	NEUTRAL	NA	755	Too-Many
TCGA.CM.6165.01A	9	14815	141109683	7452	-0.0069	NEUTRAL	NA	755	Too-Many
TCGA.DM.A282.01A	9	14815	141109683	7421	-0.001	NEUTRAL	NA	755	Too-Many
TCGA.AY.A54L.01A	9	14815	141111352	7430	0.0403	NEUTRAL	NA	755	Too-Many
TCGA.AG.A036.01A	9	106867	140229505	7178	0.1998	NEUTRAL	NA	743	Too-Many
TCGA.AA.3862.01A	9	116866	121449	4	0.1375	NEUTRAL	NA	2	"CBWD1,FOXD4"
TCGA.AG.3891.01A	9	116866	214478	8	-0.384	NEUTRAL	NA	3	"C9orf66,CBWD1,FOXD4"
TCGA.AG.A015.01A	9	116866	379744	27	-0.1353	NEUTRAL	NA	4	"C9orf66,CBWD1,DOCK8,FOXD4"
TCGA.AA.A017.01A	9	116866	382493	28	0.1981	NEUTRAL	NA	4	"C9orf66,CBWD1,DOCK8,FOXD4"
TCGA.AG.A00C.01A	9	116866	916715	68	-0.1389	NEUTRAL	NA	6	"C9orf66,CBWD1,DMRT1,DOCK8,FOXD4,KANK1"
TCGA.AA.A00O.01A	9	116866	2643180	113	-0.0974	NEUTRAL	NA	10	"C9orf66,CBWD1,DMRT1,DMRT2,DMRT3,DOCK8,FOXD4,KANK1,SMARCA2,VLDLR"
TCGA.AA.A02H.01A	9	116866	4701847	198	-0.1965	NEUTRAL	NA	18	"C9orf66,CBWD1,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,FOXD4,GLIS3,KANK1,KCNV2,KIAA0020,PPAPDC2,RFX3,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AA.A01C.01A	9	116866	5126634	235	0.3001	NEUTRAL	NA	21	"AK3,C9orf66,CBWD1,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,FOXD4,GLIS3,JAK2,KANK1,KCNV2,KIAA0020,PPAPDC2,RCL1,RFX3,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AG.3906.01A	9	116866	15225876	545	-0.0625	NEUTRAL	NA	48	"AK3,C9orf66,CBWD1,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.A00Q.01A	9	116866	15510051	472	0.1432	NEUTRAL	NA	50	"AK3,C9orf66,CBWD1,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3930.01A	9	116866	16870548	649	-0.047	NEUTRAL	NA	53	"AK3,BNC2,C9orf66,C9orf92,CBWD1,CCDC171,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3861.01A	9	116866	17235609	655	-0.1998	NEUTRAL	NA	54	"AK3,BNC2,C9orf66,C9orf92,CBWD1,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.A01N.01A	9	116866	23764955	848	0.0149	NEUTRAL	NA	89	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CBWD1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FOXD4,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.A00Y.01A	9	116866	27204877	908	-0.0901	NEUTRAL	NA	97	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CAAP1,CBWD1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FOXD4,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.A01L.01A	9	116866	33462630	1073	-0.085	NEUTRAL	NA	119	Too-Many
TCGA.AA.A01K.01A	9	116866	33973122	1119	0.0445	NEUTRAL	NA	123	Too-Many
TCGA.AG.A025.01A	9	116866	34610834	1206	0.0235	NEUTRAL	NA	134	Too-Many
TCGA.AA.A01I.01A	9	116866	35064119	1244	-0.0839	NEUTRAL	NA	147	Too-Many
TCGA.AF.3914.01A	9	116866	35563695	1361	-0.2172	NEUTRAL	NA	154	Too-Many
TCGA.AG.A02G.01A	9	116866	35741621	1422	-0.4136	NEUTRAL	NA	164	Too-Many
TCGA.AA.3815.01A	9	116866	38607360	1779	-0.0034	NEUTRAL	NA	197	Too-Many
TCGA.AA.A004.01A	9	116866	70871799	1666	-0.1329	NEUTRAL	NA	215	Too-Many
TCGA.AG.A008.01A	9	116866	71687516	1741	0.1219	NEUTRAL	NA	222	Too-Many
TCGA.AG.A011.01A	9	116866	91606348	2512	0.0448	NEUTRAL	NA	291	Too-Many
TCGA.AA.A02W.01A	9	116866	96850396	2773	0.065	NEUTRAL	NA	323	Too-Many
TCGA.AG.A014.01A	9	116866	117104239	4055	-0.1894	NEUTRAL	NA	459	Too-Many
TCGA.AA.A029.01A	9	116866	130127515	4679	0.1229	NEUTRAL	NA	538	Too-Many
TCGA.AA.A02E.01A	9	116866	130155321	4713	0.0866	NEUTRAL	NA	538	Too-Many
TCGA.AA.A02F.01A	9	116866	130479076	4624	0.1286	NEUTRAL	NA	547	Too-Many
TCGA.AG.A032.01A	9	116866	131008625	4870	0.1713	NEUTRAL	NA	565	Too-Many
TCGA.AA.A02R.01A	9	116866	131112538	4860	-0.0788	NEUTRAL	NA	570	Too-Many
TCGA.AG.A00H.01A	9	116866	131112538	4961	0.0086	NEUTRAL	NA	570	Too-Many
TCGA.AA.A01D.01A	9	116866	131757581	4975	0.1123	NEUTRAL	NA	588	Too-Many
TCGA.AA.A024.01A	9	116866	136200509	5848	0.0189	NEUTRAL	NA	643	Too-Many
TCGA.AA.A02J.01A	9	116866	141009976	5721	-0.083	NEUTRAL	NA	753	Too-Many
TCGA.AG.A016.01A	9	116866	141015884	6214	-0.1024	NEUTRAL	NA	753	Too-Many
TCGA.AG.A01J.01A	9	116866	141015884	6001	-0.0515	NEUTRAL	NA	753	Too-Many
TCGA.CM.4744.01A	9	116866	141109683	7443	-0.0631	NEUTRAL	NA	754	Too-Many
TCGA.AA.A02K.01A	9	116867	82336615	2342	-0.0241	NEUTRAL	NA	257	Too-Many
TCGA.AA.A00A.01A	9	117671	382493	23	0.0185	NEUTRAL	NA	4	"C9orf66,CBWD1,DOCK8,FOXD4"
TCGA.AA.A00F.01A	9	117671	5812070	276	0.1218	NEUTRAL	NA	30	"AK3,C9orf66,CBWD1,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,GLIS3,INSL4,INSL6,JAK2,KANK1,KCNV2,KIAA0020,PDCD1LG2,PLGRKT,PPAPDC2,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AA.A00L.01A	9	117671	8317819	366	-0.0086	NEUTRAL	NA	40	"AK3,C9orf66,CBWD1,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.AG.3611.01A	9	117671	15457907	449	0.1368	NEUTRAL	NA	49	"AK3,C9orf66,CBWD1,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.A01F.01A	9	117671	33447383	915	-0.328	NEUTRAL	NA	118	Too-Many
TCGA.AA.A00J.01A	9	117671	140972518	5684	0.024	NEUTRAL	NA	753	Too-Many
TCGA.AA.A00K.01A	9	117671	140995508	5681	0.0015	NEUTRAL	NA	753	Too-Many
TCGA.AA.A00D.01A	9	121449	336565	13	0.0792	NEUTRAL	NA	3	"C9orf66,CBWD1,DOCK8"
TCGA.AG.4009.01A	9	172055	916715	67	-0.0032	NEUTRAL	NA	5	"C9orf66,CBWD1,DMRT1,DOCK8,KANK1"
TCGA.AA.3939.01A	9	172055	40784450	1813	-0.22	NEUTRAL	NA	200	Too-Many
TCGA.F4.6570	9	192128	216123	3	-0.3604	NEUTRAL	NA	2	"C9orf66,DOCK8"
TCGA.AA.3850	9	192128	241321	16	-0.37315	NEUTRAL	NA	2	"C9orf66,DOCK8"
TCGA.AA.3811	9	192128	271466	41	0.0209	NEUTRAL	NA	2	"C9orf66,DOCK8"
TCGA.AA.3982	9	192128	346886	89	0.1364	NEUTRAL	NA	2	"C9orf66,DOCK8"
TCGA.AA.3869	9	192128	393605	133	0.314	NEUTRAL	NA	2	"C9orf66,DOCK8"
TCGA.A6.5665	9	192128	410311	148	0.0273	NEUTRAL	NA	2	"C9orf66,DOCK8"
TCGA.5M.AAT5	9	192128	499585	217	-0.1118	NEUTRAL	NA	3	"C9orf66,DOCK8,KANK1"
TCGA.5M.AATA	9	192128	510545	220	-0.0144	NEUTRAL	NA	3	"C9orf66,DOCK8,KANK1"
TCGA.3L.AA1B	9	192128	612166	285	-0.0373	NEUTRAL	NA	3	"C9orf66,DOCK8,KANK1"
TCGA.A6.2681	9	192128	669385	347	-0.5136	NEUTRAL	NA	3	"C9orf66,DOCK8,KANK1"
TCGA.AZ.4315	9	192128	1404429	839	-0.0182	NEUTRAL	NA	6	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.A6.2683	9	192128	1446458	864	-0.017	NEUTRAL	NA	6	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.AA.3530	9	192128	1533936	957	0.0361	NEUTRAL	NA	6	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.AA.3870	9	192128	1537882	961	-0.0716	NEUTRAL	NA	6	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.D5.6931	9	192128	1762596	1170	-0.0096	NEUTRAL	NA	6	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.AA.3697	9	192128	1811656	1204	-0.2793	NEUTRAL	NA	6	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.AD.6888	9	192128	2147098	1421	-0.3275	NEUTRAL	NA	7	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1,SMARCA2"
TCGA.DC.6158	9	192128	2454962	1658	-0.2942	NEUTRAL	NA	7	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1,SMARCA2"
TCGA.AF.A56K	9	192128	2715283	1832	-0.0023	NEUTRAL	NA	8	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1,SMARCA2,VLDLR"
TCGA.AA.3864	9	192128	3160717	2082	0.0031	NEUTRAL	NA	10	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1,KCNV2,KIAA0020,SMARCA2,VLDLR"
TCGA.AA.3989	9	192128	3160717	2086	0.0175	NEUTRAL	NA	10	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1,KCNV2,KIAA0020,SMARCA2,VLDLR"
TCGA.AG.3883	9	192128	4005380	2456	-0.1591	NEUTRAL	NA	12	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,KANK1,KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.G4.6309	9	192128	4077073	2533	-0.0121	NEUTRAL	NA	12	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,KANK1,KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.AA.A01Z	9	192128	4211588	2657	-0.0016	NEUTRAL	NA	12	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,KANK1,KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.F5.6814	9	192128	4381508	2774	-0.2163	NEUTRAL	NA	12	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,KANK1,KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.G4.6298	9	192128	5235588	3184	-0.001	NEUTRAL	NA	21	"AK3,C9orf66,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,INSL4,INSL6,JAK2,KANK1,KCNV2,KIAA0020,PPAPDC2,RCL1,RFX3,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.EI.7004	9	192128	5302094	3203	0.3387	NEUTRAL	NA	22	"AK3,C9orf66,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,INSL4,INSL6,JAK2,KANK1,KCNV2,KIAA0020,PPAPDC2,RCL1,RFX3,RLN2,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.G4.6299	9	192128	5354680	3226	0.2984	NEUTRAL	NA	23	"AK3,C9orf66,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,INSL4,INSL6,JAK2,KANK1,KCNV2,KIAA0020,PPAPDC2,RCL1,RFX3,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AA.A01S	9	192128	5925877	3422	-0.00335	NEUTRAL	NA	30	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLIS3,INSL4,INSL6,JAK2,KANK1,KCNV2,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AG.A01Y	9	192128	6125352	3480	0.0253	NEUTRAL	NA	31	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLIS3,INSL4,INSL6,JAK2,KANK1,KCNV2,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.DM.A1HB	9	192128	6928723	3696	0.0082	NEUTRAL	NA	36	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TPD52L3,UHRF2,VLDLR"
TCGA.EI.6508	9	192128	6996234	3813	0.0143	NEUTRAL	NA	36	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TPD52L3,UHRF2,VLDLR"
TCGA.AA.3866	9	192128	8177861	4617	0.0448	NEUTRAL	NA	37	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.CA.5254	9	192128	8749290	4915	-0.0027	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.EI.6507	9	192128	8984468	5068	0.0028	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.AG.3896	9	192128	9486281	5344	-0.0047	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.BM.6198	9	192128	10279605	5777	-0.43805	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.AD.6889	9	192128	10518230	5868	0.0355	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.AY.A71X	9	192128	10706025	5937	0.0207	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.AG.3901	9	192128	11003453	6029	0.0478	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.AA.3848	9	192128	11988658	6416	0.0228	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.A6.2680	9	192128	11995296	6398	0.0008	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.DM.A0XF	9	192128	11996162	6417	-0.5076	NEUTRAL	NA	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.AA.3842	9	192128	12907730	6789	0.0312	NEUTRAL	NA	40	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,TYRP1,UHRF2,VLDLR"
TCGA.T9.A92H	9	192128	12928474	6806	0.2864	NEUTRAL	NA	40	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,TYRP1,UHRF2,VLDLR"
TCGA.D5.6532	9	192128	13420599	6959	0.0193	NEUTRAL	NA	41	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,TYRP1,UHRF2,VLDLR"
TCGA.DM.A28A	9	192128	15830017	8070	0.2379	NEUTRAL	NA	49	"AK3,C9orf66,CCDC171,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.A6.5661	9	192128	16051063	8167	0.0778	NEUTRAL	NA	49	"AK3,C9orf66,CCDC171,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3713	9	192128	17581149	8930	0.0116	NEUTRAL	NA	53	"AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SH3GL2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3488	9	192128	17979558	9177	0.3132	NEUTRAL	NA	53	"AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SH3GL2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.D5.6533	9	192128	18804417	9605	-0.1697	NEUTRAL	NA	54	"ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SH3GL2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3532	9	192128	19224861	9849	-0.2596	NEUTRAL	NA	58	"ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,HAUS6,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RRAGA,SAXO1,SH3GL2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3519	9	192128	19339255	9869	-0.3642	NEUTRAL	NA	59	"ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,HAUS6,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RRAGA,SAXO1,SH3GL2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AZ.6607	9	192128	19516279	9916	-0.235	NEUTRAL	NA	62	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,HAUS6,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.DM.A28F	9	192128	20925920	10500	0.0036	NEUTRAL	NA	64	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HAUS6,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MLLT3,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.CK.4947	9	192128	21352376	10679	0.0236	NEUTRAL	NA	77	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA10,IFNA14,IFNA16,IFNA17,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNB1,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3527	9	192128	21391230	10695	-0.0214	NEUTRAL	NA	79	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNB1,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AY.A69D	9	192128	21535798	10736	0.0081	NEUTRAL	NA	82	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3855	9	192128	21801318	10844	0.0432	NEUTRAL	NA	82	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.DM.A0XD	9	192128	21934441	10864	-0.002	NEUTRAL	NA	83	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3844	9	192128	22170982	10966	0.2729	NEUTRAL	NA	85	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.F4.6461	9	192128	22697534	11104	0.0158	NEUTRAL	NA	86	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.DM.A28H	9	192128	23093610	11235	0.0111	NEUTRAL	NA	86	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3860	9	192128	23359505	11367	0.0046	NEUTRAL	NA	86	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.A6.6649	9	192128	24497683	11716	-0.1092	NEUTRAL	NA	87	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AH.6644	9	192128	24497683	11677	0.261	NEUTRAL	NA	87	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.DM.A1D9	9	192128	25413178	12044	0.0105	NEUTRAL	NA	88	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3666	9	192128	25499527	12086	0.051	NEUTRAL	NA	88	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.3902	9	192128	26113422	12285	0.3088	NEUTRAL	NA	90	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LOC100506422,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.CM.5348	9	192128	26298133	12388	-0.4516	NEUTRAL	NA	90	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LOC100506422,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AY.5543	9	192128	27235348	12693	0.2867	NEUTRAL	NA	95	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.F5.6464	9	192128	27235348	12791	0.2879	NEUTRAL	NA	95	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.F5.6465	9	192128	27235348	12793	0.0122	NEUTRAL	NA	95	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3867	9	192128	27582310	12975	-0.2189	NEUTRAL	NA	99	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.G4.6322	9	192128	29061609	13659	0.0211	NEUTRAL	NA	100	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LINGO2,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.CM.6169	9	192128	29366038	13654	-0.0526	NEUTRAL	NA	100	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LINGO2,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3693	9	192128	29904343	13943	-0.0231	NEUTRAL	NA	100	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LINGO2,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.3580	9	192128	30064498	13998	0.0052	NEUTRAL	NA	100	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LINGO2,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.D5.6536	9	192128	31468723	14395	0.0145	NEUTRAL	NA	100	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LINGO2,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.EI.6512	9	192128	32744778	14859	0.0108	NEUTRAL	NA	105	Too-Many
TCGA.AG.3890	9	192128	32879786	14905	0.136	NEUTRAL	NA	106	Too-Many
TCGA.AA.3977	9	192128	32891040	14917	-0.0634	NEUTRAL	NA	106	Too-Many
TCGA.AU.3779	9	192128	33343048	15124	0.209	NEUTRAL	NA	114	Too-Many
TCGA.AA.3710	9	192128	33921976	15251	-0.0038	NEUTRAL	NA	121	Too-Many
TCGA.D5.6534	9	192128	35573941	15591	-0.2812	NEUTRAL	NA	152	Too-Many
TCGA.G4.6303	9	192128	35599751	15629	0.0044	NEUTRAL	NA	152	Too-Many
TCGA.DY.A1DG	9	192128	36736810	15929	-0.4712	NEUTRAL	NA	179	Too-Many
TCGA.AH.6897	9	192128	36885745	15979	-0.0416	NEUTRAL	NA	180	Too-Many
TCGA.AA.3543	9	192128	37031875	16089	-0.0063	NEUTRAL	NA	180	Too-Many
TCGA.AA.3877	9	192128	37031875	16091	-0.0121	NEUTRAL	NA	180	Too-Many
TCGA.AA.3956	9	192128	37294433	16132	-0.0498	NEUTRAL	NA	181	Too-Many
TCGA.AA.3972	9	192128	37312953	16139	-0.3606	NEUTRAL	NA	181	Too-Many
TCGA.CK.4950	9	192128	38485255	16442	0.0048	NEUTRAL	NA	194	Too-Many
TCGA.AF.6136	9	192128	38666105	16617	0.1734	NEUTRAL	NA	195	Too-Many
TCGA.A6.6142	9	192128	38703363	16674	0.1803	NEUTRAL	NA	195	Too-Many
TCGA.CM.5344	9	192128	38771830	16709	0.2859	NEUTRAL	NA	195	Too-Many
TCGA.AA.3712	9	192128	39184064	16720	-0.3744	NEUTRAL	NA	196	Too-Many
TCGA.AY.4071	9	192128	39184064	16632	0.0047	NEUTRAL	NA	196	Too-Many
TCGA.AZ.6601	9	192128	39184064	16711	0.0035	NEUTRAL	NA	196	Too-Many
TCGA.F4.6808	9	192128	39184064	16676	-0.2455	NEUTRAL	NA	196	Too-Many
TCGA.F5.6702	9	192128	39184064	16647	0.1218	NEUTRAL	NA	196	Too-Many
TCGA.A6.3809	9	192128	44795318	15114	-0.0026	NEUTRAL	NA	206	Too-Many
TCGA.EI.6514	9	192128	68298351	16689	-0.3954	NEUTRAL	NA	207	Too-Many
TCGA.AA.3489	9	192128	68324146	16670	0.02	NEUTRAL	NA	207	Too-Many
TCGA.AF.5654	9	192128	68324146	16693	-0.0034	NEUTRAL	NA	207	Too-Many
TCGA.DM.A288	9	192128	69492990	16680	-0.3722	NEUTRAL	NA	211	Too-Many
TCGA.5M.AAT4	9	192128	71013799	16717	0.2221	NEUTRAL	NA	215	Too-Many
TCGA.A6.4105	9	192128	71019572	16733	-0.3018	NEUTRAL	NA	215	Too-Many
TCGA.AF.2687	9	192128	71129949	16719	-0.1828	NEUTRAL	NA	215	Too-Many
TCGA.AZ.4681	9	192128	74487172	18108	0.0263	NEUTRAL	NA	231	Too-Many
TCGA.AA.3979	9	192128	79202156	19637	0.0095	NEUTRAL	NA	247	Too-Many
TCGA.AA.3549	9	192128	79324438	19787	-0.0009	NEUTRAL	NA	248	Too-Many
TCGA.AH.6643	9	192128	79592173	19892	0.2827	NEUTRAL	NA	248	Too-Many
TCGA.AG.3727	9	192128	79707907	19989	0.0039	NEUTRAL	NA	249	Too-Many
TCGA.AA.3695	9	192128	79710257	19993	0.0075	NEUTRAL	NA	249	Too-Many
TCGA.QL.A97D	9	192128	81587906	20555	0.1891	NEUTRAL	NA	254	Too-Many
TCGA.CM.4747	9	192128	84380738	21657	0.0027	NEUTRAL	NA	256	Too-Many
TCGA.G4.6321	9	192128	86189819	22256	0.0061	NEUTRAL	NA	261	Too-Many
TCGA.AG.3742	9	192128	88055203	22826	0.0082	NEUTRAL	NA	270	Too-Many
TCGA.CM.4746	9	192128	90040473	23612	0.0046	NEUTRAL	NA	278	Too-Many
TCGA.AA.3976	9	192128	91029059	24052	0.2796	NEUTRAL	NA	285	Too-Many
TCGA.AG.3584	9	192128	91227863	24100	0	NEUTRAL	NA	286	Too-Many
TCGA.D5.6538	9	192128	92817190	24620	0	NEUTRAL	NA	294	Too-Many
TCGA.CI.6623	9	192128	96897032	25945	-0.1094	NEUTRAL	NA	321	Too-Many
TCGA.AA.3556	9	192128	97936268	26203	0.0179	NEUTRAL	NA	328	Too-Many
TCGA.AA.3858	9	192128	98238357	26338	0.0393	NEUTRAL	NA	329	Too-Many
TCGA.D5.6535	9	192128	100022655	26832	0.016	NEUTRAL	NA	341	Too-Many
TCGA.AA.3696	9	192128	100158051	26898	-0.0033	NEUTRAL	NA	342	Too-Many
TCGA.G5.6235	9	192128	100158051	26884	0.0019	NEUTRAL	NA	342	Too-Many
TCGA.AA.A02Y	9	192128	101557528	27379	0.0089	NEUTRAL	NA	357	Too-Many
TCGA.A6.2679	9	192128	102876180	27713	0.0631	NEUTRAL	NA	366	Too-Many
TCGA.AA.3952	9	192128	105016748	28475	0.03	NEUTRAL	NA	380	Too-Many
TCGA.DC.5869	9	192128	107361709	29240	-0.0617	NEUTRAL	NA	387	Too-Many
TCGA.CM.4752	9	192128	109265075	29942	0.3096	NEUTRAL	NA	398	Too-Many
TCGA.G4.6586	9	192128	111256572	30891	0.0086	NEUTRAL	NA	401	Too-Many
TCGA.A6.6140	9	192128	113355718	31909	-0.0194	NEUTRAL	NA	417	Too-Many
TCGA.AA.3831	9	192128	114726705	32375	0.0065	NEUTRAL	NA	428	Too-Many
TCGA.AM.5820	9	192128	115735910	32704	0	NEUTRAL	NA	435	Too-Many
TCGA.CA.6718	9	192128	118154602	33668	0.0071	NEUTRAL	NA	465	Too-Many
TCGA.EI.6509	9	192128	124060988	36242	-0.0505	NEUTRAL	NA	480	Too-Many
TCGA.D5.6923	9	192128	127089774	37081	1.00E-04	NEUTRAL	NA	514	Too-Many
TCGA.A6.A567	9	192128	128701902	37189	-0.1022	NEUTRAL	NA	529	Too-Many
TCGA.A6.5660	9	192128	128769543	37383	0.0315	NEUTRAL	NA	529	Too-Many
TCGA.CM.6170	9	192128	129602745	37802	-0.1983	NEUTRAL	NA	532	Too-Many
TCGA.CL.5918	9	192128	130999471	38069	-0.0064	NEUTRAL	NA	563	Too-Many
TCGA.AY.4070	9	192128	131353252	38036	-0.1741	NEUTRAL	NA	573	Too-Many
TCGA.DM.A28G	9	192128	131353252	38155	-0.0045	NEUTRAL	NA	573	Too-Many
TCGA.G4.6302	9	192128	132155663	38323	0.0007	NEUTRAL	NA	593	Too-Many
TCGA.DM.A1HA	9	192128	133390177	38631	-0.0158	NEUTRAL	NA	607	Too-Many
TCGA.AF.2692	9	192128	136134033	39456	-0.2273	NEUTRAL	NA	640	Too-Many
TCGA.D5.6531	9	192128	136265238	39474	0.2316	NEUTRAL	NA	647	Too-Many
TCGA.AA.3872	9	192128	137412654	39790	-0.2	NEUTRAL	NA	660	Too-Many
TCGA.AY.6196	9	192128	138012411	39549	0.1559	NEUTRAL	NA	664	Too-Many
TCGA.CM.6679	9	192128	138924278	40178	-0.17165	NEUTRAL	NA	678	Too-Many
TCGA.AA.3531	9	192128	138950569	40317	0	NEUTRAL	NA	678	Too-Many
TCGA.AG.3892	9	192128	139857911	40357	0.0051	NEUTRAL	NA	709	Too-Many
TCGA.AG.4008	9	192128	140921083	40296	-0.043	NEUTRAL	NA	751	Too-Many
TCGA.AZ.5403	9	192128	141011580	40540	0	NEUTRAL	NA	751	Too-Many
TCGA.A6.6137	9	192128	141013720	40613	0.009	NEUTRAL	NA	751	Too-Many
TCGA.DM.A1D6	9	192128	141013720	40601	0.0569	NEUTRAL	NA	751	Too-Many
TCGA.D5.5541	9	192128	141027938	40591	-0.0492	NEUTRAL	NA	751	Too-Many
TCGA.4N.A93T	9	192128	141071474	40595	0	NEUTRAL	NA	751	Too-Many
TCGA.4T.AA8H	9	192128	141071474	40602	-0.0041	NEUTRAL	NA	751	Too-Many
TCGA.5M.AAT6	9	192128	141071474	40604	0.0042	NEUTRAL	NA	751	Too-Many
TCGA.5M.AATE	9	192128	141071474	40611	-0.1668	NEUTRAL	NA	751	Too-Many
TCGA.A6.2674	9	192128	141071474	40588	-0.1309	NEUTRAL	NA	751	Too-Many
TCGA.A6.2675	9	192128	141071474	40332	-0.1124	NEUTRAL	NA	751	Too-Many
TCGA.A6.2677	9	192128	141071474	37056	0.0318	NEUTRAL	NA	751	Too-Many
TCGA.A6.2678	9	192128	141071474	40588	0.0109	NEUTRAL	NA	751	Too-Many
TCGA.A6.2682	9	192128	141071474	39875	0.1272	NEUTRAL	NA	751	Too-Many
TCGA.A6.2684	9	192128	141071474	37026	-0.0052	NEUTRAL	NA	751	Too-Many
TCGA.A6.2685	9	192128	141071474	40534	0	NEUTRAL	NA	751	Too-Many
TCGA.A6.2686	9	192128	141071474	40538	0.2676	NEUTRAL	NA	751	Too-Many
TCGA.A6.3807	9	192128	141071474	40432	0	NEUTRAL	NA	751	Too-Many
TCGA.A6.4107	9	192128	141071474	40591	-0.0146	NEUTRAL	NA	751	Too-Many
TCGA.A6.5656	9	192128	141071474	40439	0	NEUTRAL	NA	751	Too-Many
TCGA.A6.5657	9	192128	141071474	40512	0.0889	NEUTRAL	NA	751	Too-Many
TCGA.A6.5659	9	192128	141071474	37012	-0.0137	NEUTRAL	NA	751	Too-Many
TCGA.A6.5662	9	192128	141071474	40481	0	NEUTRAL	NA	751	Too-Many
TCGA.A6.5664	9	192128	141071474	40500	0.0025	NEUTRAL	NA	751	Too-Many
TCGA.A6.5666	9	192128	141071474	40566	0.0029	NEUTRAL	NA	751	Too-Many
TCGA.A6.5667	9	192128	141071474	40585	-0.4195	NEUTRAL	NA	751	Too-Many
TCGA.A6.6138	9	192128	141071474	40618	0.013	NEUTRAL	NA	751	Too-Many
TCGA.A6.6141	9	192128	141071474	40585	-0.0025	NEUTRAL	NA	751	Too-Many
TCGA.A6.6648	9	192128	141071474	40609	0.0218	NEUTRAL	NA	751	Too-Many
TCGA.A6.6650	9	192128	141071474	37003	-0.0529	NEUTRAL	NA	751	Too-Many
TCGA.A6.6651	9	192128	141071474	40434	-0.1537	NEUTRAL	NA	751	Too-Many
TCGA.A6.6652	9	192128	141071474	40610	-0.0003	NEUTRAL	NA	751	Too-Many
TCGA.A6.6654	9	192128	141071474	40492	-0.0026	NEUTRAL	NA	751	Too-Many
TCGA.A6.6780	9	192128	141071474	40515	0.0047	NEUTRAL	NA	751	Too-Many
TCGA.A6.6781	9	192128	141071474	36980	0.0035	NEUTRAL	NA	751	Too-Many
TCGA.A6.A565	9	192128	141071474	40332	0.0926	NEUTRAL	NA	751	Too-Many
TCGA.A6.A566	9	192128	141071474	40257	-0.0002	NEUTRAL	NA	751	Too-Many
TCGA.AA.3492	9	192128	141071474	40589	0	NEUTRAL	NA	751	Too-Many
TCGA.AA.3494	9	192128	141071474	40588	0.0016	NEUTRAL	NA	751	Too-Many
TCGA.AA.3495	9	192128	141071474	40591	-0.0004	NEUTRAL	NA	751	Too-Many
TCGA.AA.3496	9	192128	141071474	40481	-0.004	NEUTRAL	NA	751	Too-Many
TCGA.AA.3502	9	192128	141071474	40581	0	NEUTRAL	NA	751	Too-Many
TCGA.AA.3510	9	192128	141071474	40584	-0.0023	NEUTRAL	NA	751	Too-Many
TCGA.AA.3511	9	192128	141071474	40520	-0.192	NEUTRAL	NA	751	Too-Many
TCGA.AA.3514	9	192128	141071474	40593	-0.0074	NEUTRAL	NA	751	Too-Many
TCGA.AA.3516	9	192128	141071474	40537	-0.0043	NEUTRAL	NA	751	Too-Many
TCGA.AA.3518	9	192128	141071474	40503	0.0008	NEUTRAL	NA	751	Too-Many
TCGA.AA.3522	9	192128	141071474	40574	-0.0002	NEUTRAL	NA	751	Too-Many
TCGA.AA.3524	9	192128	141071474	40579	-0.0049	NEUTRAL	NA	751	Too-Many
TCGA.AA.3526	9	192128	141071474	40588	-0.0061	NEUTRAL	NA	751	Too-Many
TCGA.AA.3529	9	192128	141071474	40591	-0.0108	NEUTRAL	NA	751	Too-Many
TCGA.AA.3548	9	192128	141071474	40617	0.1944	NEUTRAL	NA	751	Too-Many
TCGA.AA.3555	9	192128	141071474	40619	0.0043	NEUTRAL	NA	751	Too-Many
TCGA.AA.3560	9	192128	141071474	40608	-0.0009	NEUTRAL	NA	751	Too-Many
TCGA.AA.3561	9	192128	141071474	40611	0.0174	NEUTRAL	NA	751	Too-Many
TCGA.AA.3655	9	192128	141071474	40599	0.0055	NEUTRAL	NA	751	Too-Many
TCGA.AA.3662	9	192128	141071474	40601	0	NEUTRAL	NA	751	Too-Many
TCGA.AA.3664	9	192128	141071474	40632	0	NEUTRAL	NA	751	Too-Many
TCGA.AA.3667	9	192128	141071474	40635	-0.0083	NEUTRAL	NA	751	Too-Many
TCGA.AA.3675	9	192128	141071474	40630	0.0078	NEUTRAL	NA	751	Too-Many
TCGA.AA.3678	9	192128	141071474	40630	-0.0189	NEUTRAL	NA	751	Too-Many
TCGA.AA.3679	9	192128	141071474	40611	-0.0056	NEUTRAL	NA	751	Too-Many
TCGA.AA.3680	9	192128	141071474	40632	0.0013	NEUTRAL	NA	751	Too-Many
TCGA.AA.3681	9	192128	141071474	40622	-0.0014	NEUTRAL	NA	751	Too-Many
TCGA.AA.3684	9	192128	141071474	40622	0.1361	NEUTRAL	NA	751	Too-Many
TCGA.AA.3685	9	192128	141071474	40635	-0.1869	NEUTRAL	NA	751	Too-Many
TCGA.AA.3688	9	192128	141071474	40631	0.0179	NEUTRAL	NA	751	Too-Many
TCGA.AA.3692	9	192128	141071474	40625	0.0275	NEUTRAL	NA	751	Too-Many
TCGA.AA.3715	9	192128	141071474	40631	-0.0006	NEUTRAL	NA	751	Too-Many
TCGA.AA.3812	9	192128	141071474	40632	-0.0086	NEUTRAL	NA	751	Too-Many
TCGA.AA.3814	9	192128	141071474	40634	-0.0072	NEUTRAL	NA	751	Too-Many
TCGA.AA.3818	9	192128	141071474	40627	0	NEUTRAL	NA	751	Too-Many
TCGA.AA.3821	9	192128	141071474	40546	0	NEUTRAL	NA	751	Too-Many
TCGA.AA.3833	9	192128	141071474	40633	5.00E-04	NEUTRAL	NA	751	Too-Many
TCGA.AA.3837	9	192128	141071474	40632	0.0143	NEUTRAL	NA	751	Too-Many
TCGA.AA.3841	9	192128	141071474	40628	0.0189	NEUTRAL	NA	751	Too-Many
TCGA.AA.3845	9	192128	141071474	40547	0.0037	NEUTRAL	NA	751	Too-Many
TCGA.AA.3846	9	192128	141071474	40578	0.0352	NEUTRAL	NA	751	Too-Many
TCGA.AA.3851	9	192128	141071474	40563	-0.0169	NEUTRAL	NA	751	Too-Many
TCGA.AA.3852	9	192128	141071474	40632	0.3538	NEUTRAL	NA	751	Too-Many
TCGA.AA.3856	9	192128	141071474	40635	0.2509	NEUTRAL	NA	751	Too-Many
TCGA.AA.3875	9	192128	141071474	40635	0.0161	NEUTRAL	NA	751	Too-Many
TCGA.AA.3947	9	192128	141071474	40553	0.0002	NEUTRAL	NA	751	Too-Many
TCGA.AA.3949	9	192128	141071474	40584	0.0093	NEUTRAL	NA	751	Too-Many
TCGA.AA.3950	9	192128	141071474	40590	0.0063	NEUTRAL	NA	751	Too-Many
TCGA.AA.3955	9	192128	141071474	40596	-0.4883	NEUTRAL	NA	751	Too-Many
TCGA.AA.3966	9	192128	141071474	40560	0.0372	NEUTRAL	NA	751	Too-Many
TCGA.AA.3968	9	192128	141071474	40588	0.0306	NEUTRAL	NA	751	Too-Many
TCGA.AA.3971	9	192128	141071474	40589	0	NEUTRAL	NA	751	Too-Many
TCGA.AA.3973	9	192128	141071474	40595	0.0091	NEUTRAL	NA	751	Too-Many
TCGA.AA.3975	9	192128	141071474	40560	0.0262	NEUTRAL	NA	751	Too-Many
TCGA.AA.3984	9	192128	141071474	40556	0.0048	NEUTRAL	NA	751	Too-Many
TCGA.AA.3986	9	192128	141071474	40587	0.0007	NEUTRAL	NA	751	Too-Many
TCGA.AA.A01P	9	192128	141071474	40554	0.0029	NEUTRAL	NA	751	Too-Many
TCGA.AA.A01R	9	192128	141071474	40593	0.002	NEUTRAL	NA	751	Too-Many
TCGA.AA.A01T	9	192128	141071474	40582	0.029	NEUTRAL	NA	751	Too-Many
TCGA.AA.A01V	9	192128	141071474	40584	0.0149	NEUTRAL	NA	751	Too-Many
TCGA.AA.A01X	9	192128	141071474	40528	0.0005	NEUTRAL	NA	751	Too-Many
TCGA.AA.A02O	9	192128	141071474	40585	0.0007	NEUTRAL	NA	751	Too-Many
TCGA.AA.A03F	9	192128	141071474	40581	0.0061	NEUTRAL	NA	751	Too-Many
TCGA.AA.A03J	9	192128	141071474	39790	-0.2997	NEUTRAL	NA	751	Too-Many
TCGA.AD.5900	9	192128	141071474	40537	-0.0002	NEUTRAL	NA	751	Too-Many
TCGA.AD.6548	9	192128	141071474	40484	-0.0551	NEUTRAL	NA	751	Too-Many
TCGA.AD.6890	9	192128	141071474	40579	0.002	NEUTRAL	NA	751	Too-Many
TCGA.AD.6895	9	192128	141071474	40573	-0.002	NEUTRAL	NA	751	Too-Many
TCGA.AD.6899	9	192128	141071474	40504	0.1163	NEUTRAL	NA	751	Too-Many
TCGA.AD.6963	9	192128	141071474	40578	-0.0512	NEUTRAL	NA	751	Too-Many
TCGA.AD.6964	9	192128	141071474	40572	1.00E-04	NEUTRAL	NA	751	Too-Many
TCGA.AD.A5EJ	9	192128	141071474	40363	0.0015	NEUTRAL	NA	751	Too-Many
TCGA.AF.2689	9	192128	141071474	40596	0.2743	NEUTRAL	NA	751	Too-Many
TCGA.AF.2691	9	192128	141071474	40591	0.0226	NEUTRAL	NA	751	Too-Many
TCGA.AF.2693	9	192128	141071474	40597	0.0094	NEUTRAL	NA	751	Too-Many
TCGA.AF.3911	9	192128	141071474	40601	0	NEUTRAL	NA	751	Too-Many
TCGA.AF.4110	9	192128	141071474	40579	0.0204	NEUTRAL	NA	751	Too-Many
TCGA.AF.6672	9	192128	141071474	40554	5.00E-04	NEUTRAL	NA	751	Too-Many
TCGA.AF.A56L	9	192128	141071474	40526	-0.1855	NEUTRAL	NA	751	Too-Many
TCGA.AF.A56N	9	192128	141071474	40521	0.0177	NEUTRAL	NA	751	Too-Many
TCGA.AG.3574	9	192128	141071474	40614	0.0031	NEUTRAL	NA	751	Too-Many
TCGA.AG.3575	9	192128	141071474	40619	0.0057	NEUTRAL	NA	751	Too-Many
TCGA.AG.3581	9	192128	141071474	40609	0.0064	NEUTRAL	NA	751	Too-Many
TCGA.AG.3583	9	192128	141071474	39474	-0.2899	NEUTRAL	NA	751	Too-Many
TCGA.AG.3591	9	192128	141071474	40610	0.1473	NEUTRAL	NA	751	Too-Many
TCGA.AG.3599	9	192128	141071474	40571	0.0104	NEUTRAL	NA	751	Too-Many
TCGA.AG.3602	9	192128	141071474	40410	0.0221	NEUTRAL	NA	751	Too-Many
TCGA.AG.3728	9	192128	141071474	40636	0.0232	NEUTRAL	NA	751	Too-Many
TCGA.AG.3731	9	192128	141071474	40609	-0.1424	NEUTRAL	NA	751	Too-Many
TCGA.AG.3732	9	192128	141071474	40481	0.0202	NEUTRAL	NA	751	Too-Many
TCGA.AG.3878	9	192128	141071474	40629	0.2361	NEUTRAL	NA	751	Too-Many
TCGA.AG.3882	9	192128	141071474	40628	-0.2991	NEUTRAL	NA	751	Too-Many
TCGA.AG.3885	9	192128	141071474	40626	-0.0043	NEUTRAL	NA	751	Too-Many
TCGA.AG.3887	9	192128	141071474	40475	0.0019	NEUTRAL	NA	751	Too-Many
TCGA.AG.3893	9	192128	141071474	40283	0.0103	NEUTRAL	NA	751	Too-Many
TCGA.AG.3894	9	192128	141071474	40518	0.0025	NEUTRAL	NA	751	Too-Many
TCGA.AG.3898	9	192128	141071474	40491	0.0281	NEUTRAL	NA	751	Too-Many
TCGA.AG.4022	9	192128	141071474	40609	-0.0213	NEUTRAL	NA	751	Too-Many
TCGA.AG.A02N	9	192128	141071474	40568	0.0045	NEUTRAL	NA	751	Too-Many
TCGA.AH.6544	9	192128	141071474	40540	-0.0771	NEUTRAL	NA	751	Too-Many
TCGA.AH.6547	9	192128	141071474	40559	0.0031	NEUTRAL	NA	751	Too-Many
TCGA.AH.6903	9	192128	141071474	40533	0.0035	NEUTRAL	NA	751	Too-Many
TCGA.AM.5821	9	192128	141071474	40459	0.005	NEUTRAL	NA	751	Too-Many
TCGA.AU.6004	9	192128	141071474	40318	-0.0035	NEUTRAL	NA	751	Too-Many
TCGA.AY.6197	9	192128	141071474	39666	0.0008	NEUTRAL	NA	751	Too-Many
TCGA.AY.6386	9	192128	141071474	40573	0.0023	NEUTRAL	NA	751	Too-Many
TCGA.AY.A8YK	9	192128	141071474	40582	-0.0682	NEUTRAL	NA	751	Too-Many
TCGA.AZ.4308	9	192128	141071474	40585	0.0019	NEUTRAL	NA	751	Too-Many
TCGA.AZ.4323	9	192128	141071474	40474	-0.0261	NEUTRAL	NA	751	Too-Many
TCGA.AZ.4615	9	192128	141071474	40585	0.0322	NEUTRAL	NA	751	Too-Many
TCGA.AZ.4616	9	192128	141071474	40501	0.0322	NEUTRAL	NA	751	Too-Many
TCGA.AZ.4682	9	192128	141071474	40591	0.0031	NEUTRAL	NA	751	Too-Many
TCGA.AZ.5407	9	192128	141071474	40600	0.0102	NEUTRAL	NA	751	Too-Many
TCGA.AZ.6598	9	192128	141071474	40618	-0.0032	NEUTRAL	NA	751	Too-Many
TCGA.AZ.6599	9	192128	141071474	40610	0	NEUTRAL	NA	751	Too-Many
TCGA.AZ.6600	9	192128	141071474	40594	0.1352	NEUTRAL	NA	751	Too-Many
TCGA.AZ.6605	9	192128	141071474	40478	-0.1572	NEUTRAL	NA	751	Too-Many
TCGA.AZ.6606	9	192128	141071474	40478	0.0048	NEUTRAL	NA	751	Too-Many
TCGA.CA.5255	9	192128	141071474	40484	0.0025	NEUTRAL	NA	751	Too-Many
TCGA.CA.5256	9	192128	141071474	40302	0.0254	NEUTRAL	NA	751	Too-Many
TCGA.CA.5797	9	192128	141071474	40566	-0.3603	NEUTRAL	NA	751	Too-Many
TCGA.CA.6715	9	192128	141071474	40437	5.00E-04	NEUTRAL	NA	751	Too-Many
TCGA.CA.6716	9	192128	141071474	40522	-0.2696	NEUTRAL	NA	751	Too-Many
TCGA.CA.6717	9	192128	141071474	40447	0.0006	NEUTRAL	NA	751	Too-Many
TCGA.CA.6719	9	192128	141071474	40493	0	NEUTRAL	NA	751	Too-Many
TCGA.CI.6619	9	192128	141071474	40547	-0.1397	NEUTRAL	NA	751	Too-Many
TCGA.CI.6620	9	192128	141071474	40531	0.0083	NEUTRAL	NA	751	Too-Many
TCGA.CI.6621	9	192128	141071474	40541	-0.0692	NEUTRAL	NA	751	Too-Many
TCGA.CI.6622	9	192128	141071474	40534	-0.0046	NEUTRAL	NA	751	Too-Many
TCGA.CI.6624	9	192128	141071474	40532	-0.1422	NEUTRAL	NA	751	Too-Many
TCGA.CK.4951	9	192128	141071474	40405	0	NEUTRAL	NA	751	Too-Many
TCGA.CK.5912	9	192128	141071474	40513	0.0451	NEUTRAL	NA	751	Too-Many
TCGA.CK.5913	9	192128	141071474	40556	0	NEUTRAL	NA	751	Too-Many
TCGA.CK.5915	9	192128	141071474	40511	-0.2424	NEUTRAL	NA	751	Too-Many
TCGA.CK.5916	9	192128	141071474	40515	0.0017	NEUTRAL	NA	751	Too-Many
TCGA.CK.6746	9	192128	141071474	40484	0.0021	NEUTRAL	NA	751	Too-Many
TCGA.CK.6747	9	192128	141071474	40465	-0.0028	NEUTRAL	NA	751	Too-Many
TCGA.CK.6748	9	192128	141071474	40539	-0.0203	NEUTRAL	NA	751	Too-Many
TCGA.CK.6751	9	192128	141071474	40398	0.001	NEUTRAL	NA	751	Too-Many
TCGA.CL.4957	9	192128	141071474	40595	-0.3872	NEUTRAL	NA	751	Too-Many
TCGA.CL.5917	9	192128	141071474	40511	-0.0209	NEUTRAL	NA	751	Too-Many
TCGA.CM.4743	9	192128	141071474	40586	0.0038	NEUTRAL	NA	751	Too-Many
TCGA.CM.4748	9	192128	141071474	40587	0.0028	NEUTRAL	NA	751	Too-Many
TCGA.CM.5341	9	192128	141071474	40583	0.0289	NEUTRAL	NA	751	Too-Many
TCGA.CM.5349	9	192128	141071474	40588	-0.0092	NEUTRAL	NA	751	Too-Many
TCGA.CM.5860	9	192128	141071474	40534	-0.0271	NEUTRAL	NA	751	Too-Many
TCGA.CM.5861	9	192128	141071474	40565	0	NEUTRAL	NA	751	Too-Many
TCGA.CM.5862	9	192128	141071474	40527	0.319	NEUTRAL	NA	751	Too-Many
TCGA.CM.5863	9	192128	141071474	40536	0.0844	NEUTRAL	NA	751	Too-Many
TCGA.CM.5864	9	192128	141071474	40532	0.3285	NEUTRAL	NA	751	Too-Many
TCGA.CM.5868	9	192128	141071474	40546	0.1934	NEUTRAL	NA	751	Too-Many
TCGA.CM.6161	9	192128	141071474	40525	-0.0326	NEUTRAL	NA	751	Too-Many
TCGA.CM.6162	9	192128	141071474	40457	-0.0028	NEUTRAL	NA	751	Too-Many
TCGA.CM.6164	9	192128	141071474	40553	0	NEUTRAL	NA	751	Too-Many
TCGA.CM.6166	9	192128	141071474	40597	-0.0032	NEUTRAL	NA	751	Too-Many
TCGA.CM.6167	9	192128	141071474	40579	0.1747	NEUTRAL	NA	751	Too-Many
TCGA.CM.6168	9	192128	141071474	40590	0.0006	NEUTRAL	NA	751	Too-Many
TCGA.CM.6171	9	192128	141071474	40604	-0.0024	NEUTRAL	NA	751	Too-Many
TCGA.CM.6172	9	192128	141071474	40607	0.003	NEUTRAL	NA	751	Too-Many
TCGA.CM.6674	9	192128	141071474	40515	-0.005	NEUTRAL	NA	751	Too-Many
TCGA.CM.6676	9	192128	141071474	40475	-0.1059	NEUTRAL	NA	751	Too-Many
TCGA.CM.6677	9	192128	141071474	40407	0	NEUTRAL	NA	751	Too-Many
TCGA.CM.6678	9	192128	141071474	40509	-0.1425	NEUTRAL	NA	751	Too-Many
TCGA.CM.6680	9	192128	141071474	40531	0.0122	NEUTRAL	NA	751	Too-Many
TCGA.D5.5537	9	192128	141071474	40527	0.0017	NEUTRAL	NA	751	Too-Many
TCGA.D5.5538	9	192128	141071474	40551	0	NEUTRAL	NA	751	Too-Many
TCGA.D5.5540	9	192128	141071474	40596	0.0057	NEUTRAL	NA	751	Too-Many
TCGA.D5.6529	9	192128	141071474	40609	-0.2289	NEUTRAL	NA	751	Too-Many
TCGA.D5.6530	9	192128	141071474	40607	0.0035	NEUTRAL	NA	751	Too-Many
TCGA.D5.6537	9	192128	141071474	40375	-0.0014	NEUTRAL	NA	751	Too-Many
TCGA.D5.6539	9	192128	141071474	40512	0.2277	NEUTRAL	NA	751	Too-Many
TCGA.D5.6540	9	192128	141071474	40511	0.0019	NEUTRAL	NA	751	Too-Many
TCGA.D5.6541	9	192128	141071474	40603	0	NEUTRAL	NA	751	Too-Many
TCGA.D5.6898	9	192128	141071474	40545	-0.3018	NEUTRAL	NA	751	Too-Many
TCGA.D5.6920	9	192128	141071474	40533	0.0048	NEUTRAL	NA	751	Too-Many
TCGA.D5.6922	9	192128	141071474	40541	0.0102	NEUTRAL	NA	751	Too-Many
TCGA.D5.6924	9	192128	141071474	40546	-0.0208	NEUTRAL	NA	751	Too-Many
TCGA.D5.6926	9	192128	141071474	40547	0	NEUTRAL	NA	751	Too-Many
TCGA.D5.6927	9	192128	141071474	40549	0.004	NEUTRAL	NA	751	Too-Many
TCGA.D5.6928	9	192128	141071474	40542	0.1651	NEUTRAL	NA	751	Too-Many
TCGA.D5.6929	9	192128	141071474	40545	0.2416	NEUTRAL	NA	751	Too-Many
TCGA.D5.6930	9	192128	141071474	40541	0.0026	NEUTRAL	NA	751	Too-Many
TCGA.D5.6932	9	192128	141071474	40536	0	NEUTRAL	NA	751	Too-Many
TCGA.D5.7000	9	192128	141071474	40440	0	NEUTRAL	NA	751	Too-Many
TCGA.DC.4749	9	192128	141071474	40613	-0.4908	NEUTRAL	NA	751	Too-Many
TCGA.DC.5337	9	192128	141071474	40433	-0.0035	NEUTRAL	NA	751	Too-Many
TCGA.DC.6154	9	192128	141071474	40538	-1.00E-04	NEUTRAL	NA	751	Too-Many
TCGA.DC.6155	9	192128	141071474	40410	0	NEUTRAL	NA	751	Too-Many
TCGA.DC.6157	9	192128	141071474	40237	0.1485	NEUTRAL	NA	751	Too-Many
TCGA.DC.6681	9	192128	141071474	40540	0	NEUTRAL	NA	751	Too-Many
TCGA.DC.6682	9	192128	141071474	40555	0.0245	NEUTRAL	NA	751	Too-Many
TCGA.DC.6683	9	192128	141071474	40516	-0.06	NEUTRAL	NA	751	Too-Many
TCGA.DM.A0X9	9	192128	141071474	40593	0.001	NEUTRAL	NA	751	Too-Many
TCGA.DM.A1D0	9	192128	141071474	40391	0.0198	NEUTRAL	NA	751	Too-Many
TCGA.DM.A1D4	9	192128	141071474	40607	0.005	NEUTRAL	NA	751	Too-Many
TCGA.DM.A1D7	9	192128	141071474	40606	0.0248	NEUTRAL	NA	751	Too-Many
TCGA.DM.A1D8	9	192128	141071474	40526	0.3188	NEUTRAL	NA	751	Too-Many
TCGA.DM.A1DB	9	192128	141071474	40606	0.0109	NEUTRAL	NA	751	Too-Many
TCGA.DM.A280	9	192128	141071474	40531	-0.0034	NEUTRAL	NA	751	Too-Many
TCGA.DM.A28C	9	192128	141071474	40554	-0.0051	NEUTRAL	NA	751	Too-Many
TCGA.DM.A28E	9	192128	141071474	40510	0.0011	NEUTRAL	NA	751	Too-Many
TCGA.DT.5265	9	192128	141071474	40554	0.0208	NEUTRAL	NA	751	Too-Many
TCGA.DY.A0XA	9	192128	141071474	40559	0	NEUTRAL	NA	751	Too-Many
TCGA.DY.A1DC	9	192128	141071474	40469	0.005	NEUTRAL	NA	751	Too-Many
TCGA.DY.A1H8	9	192128	141071474	40608	0.0083	NEUTRAL	NA	751	Too-Many
TCGA.EF.5830	9	192128	141071474	40525	-0.1589	NEUTRAL	NA	751	Too-Many
TCGA.EI.6506	9	192128	141071474	40528	0.0025	NEUTRAL	NA	751	Too-Many
TCGA.EI.6510	9	192128	141071474	40498	0.01	NEUTRAL	NA	751	Too-Many
TCGA.EI.6511	9	192128	141071474	40580	0.0124	NEUTRAL	NA	751	Too-Many
TCGA.EI.6513	9	192128	141071474	40611	0	NEUTRAL	NA	751	Too-Many
TCGA.EI.6881	9	192128	141071474	40540	0.0241	NEUTRAL	NA	751	Too-Many
TCGA.EI.6882	9	192128	141071474	40550	0.0081	NEUTRAL	NA	751	Too-Many
TCGA.EI.6884	9	192128	141071474	40509	0.2108	NEUTRAL	NA	751	Too-Many
TCGA.EI.6885	9	192128	141071474	40529	-0.0059	NEUTRAL	NA	751	Too-Many
TCGA.EI.6917	9	192128	141071474	40518	-0.0041	NEUTRAL	NA	751	Too-Many
TCGA.EI.7002	9	192128	141071474	40548	0.0049	NEUTRAL	NA	751	Too-Many
TCGA.F4.6459	9	192128	141071474	40615	0.0838	NEUTRAL	NA	751	Too-Many
TCGA.F4.6460	9	192128	141071474	40614	0.0673	NEUTRAL	NA	751	Too-Many
TCGA.F4.6463	9	192128	141071474	40596	-0.0019	NEUTRAL	NA	751	Too-Many
TCGA.F4.6569	9	192128	141071474	40620	-0.0017	NEUTRAL	NA	751	Too-Many
TCGA.F4.6703	9	192128	141071474	40536	0	NEUTRAL	NA	751	Too-Many
TCGA.F4.6805	9	192128	141071474	40527	0.0275	NEUTRAL	NA	751	Too-Many
TCGA.F4.6806	9	192128	141071474	40437	-0.0002	NEUTRAL	NA	751	Too-Many
TCGA.F4.6807	9	192128	141071474	40495	0.0021	NEUTRAL	NA	751	Too-Many
TCGA.F4.6809	9	192128	141071474	40520	0.0015	NEUTRAL	NA	751	Too-Many
TCGA.F4.6854	9	192128	141071474	40524	0.006	NEUTRAL	NA	751	Too-Many
TCGA.F4.6855	9	192128	141071474	40514	0.0026	NEUTRAL	NA	751	Too-Many
TCGA.F4.6856	9	192128	141071474	40549	-0.0007	NEUTRAL	NA	751	Too-Many
TCGA.F5.6571	9	192128	141071474	40544	0	NEUTRAL	NA	751	Too-Many
TCGA.F5.6810	9	192128	141071474	40552	0.1907	NEUTRAL	NA	751	Too-Many
TCGA.F5.6812	9	192128	141071474	40543	0	NEUTRAL	NA	751	Too-Many
TCGA.F5.6813	9	192128	141071474	40560	0.3185	NEUTRAL	NA	751	Too-Many
TCGA.F5.6861	9	192128	141071474	40521	0.3213	NEUTRAL	NA	751	Too-Many
TCGA.F5.6863	9	192128	141071474	40541	0	NEUTRAL	NA	751	Too-Many
TCGA.F5.6864	9	192128	141071474	40548	0.0865	NEUTRAL	NA	751	Too-Many
TCGA.G4.6293	9	192128	141071474	40572	0	NEUTRAL	NA	751	Too-Many
TCGA.G4.6294	9	192128	141071474	40613	0.0038	NEUTRAL	NA	751	Too-Many
TCGA.G4.6295	9	192128	141071474	40604	-0.3904	NEUTRAL	NA	751	Too-Many
TCGA.G4.6297	9	192128	141071474	40596	-0.2906	NEUTRAL	NA	751	Too-Many
TCGA.G4.6304	9	192128	141071474	40544	-0.0017	NEUTRAL	NA	751	Too-Many
TCGA.G4.6306	9	192128	141071474	40598	-0.0087	NEUTRAL	NA	751	Too-Many
TCGA.G4.6307	9	192128	141071474	40603	-0.0022	NEUTRAL	NA	751	Too-Many
TCGA.G4.6310	9	192128	141071474	40581	-0.0237	NEUTRAL	NA	751	Too-Many
TCGA.G4.6311	9	192128	141071474	40594	-0.0267	NEUTRAL	NA	751	Too-Many
TCGA.G4.6314	9	192128	141071474	40606	0.0034	NEUTRAL	NA	751	Too-Many
TCGA.G4.6315	9	192128	141071474	40603	0.0041	NEUTRAL	NA	751	Too-Many
TCGA.G4.6317	9	192128	141071474	40604	0.0179	NEUTRAL	NA	751	Too-Many
TCGA.G4.6320	9	192128	141071474	40601	-0.0025	NEUTRAL	NA	751	Too-Many
TCGA.G4.6323	9	192128	141071474	40587	0.0773	NEUTRAL	NA	751	Too-Many
TCGA.G4.6588	9	192128	141071474	40610	-0.0038	NEUTRAL	NA	751	Too-Many
TCGA.G4.6625	9	192128	141071474	40600	0.2191	NEUTRAL	NA	751	Too-Many
TCGA.G4.6628	9	192128	141071474	40520	0	NEUTRAL	NA	751	Too-Many
TCGA.G5.6233	9	192128	141071474	40608	0.3099	NEUTRAL	NA	751	Too-Many
TCGA.G5.6572	9	192128	141071474	40538	0	NEUTRAL	NA	751	Too-Many
TCGA.G5.6641	9	192128	141071474	40525	0.0864	NEUTRAL	NA	751	Too-Many
TCGA.NH.A50T	9	192128	141071474	40329	0.0192	NEUTRAL	NA	751	Too-Many
TCGA.NH.A50U	9	192128	141071474	40587	0.2561	NEUTRAL	NA	751	Too-Many
TCGA.NH.A50V	9	192128	141071474	40338	0.0004	NEUTRAL	NA	751	Too-Many
TCGA.NH.A5IV	9	192128	141071474	40501	0.0096	NEUTRAL	NA	751	Too-Many
TCGA.NH.A6GB	9	192128	141071474	40582	-0.048	NEUTRAL	NA	751	Too-Many
TCGA.NH.A8F7	9	192128	141071474	40447	0.3245	NEUTRAL	NA	751	Too-Many
TCGA.QG.A5YW	9	192128	141071474	40352	-0.0359	NEUTRAL	NA	751	Too-Many
TCGA.QG.A5YX	9	192128	141071474	40261	-0.0106	NEUTRAL	NA	751	Too-Many
TCGA.QG.A5Z1	9	192128	141071474	40238	0	NEUTRAL	NA	751	Too-Many
TCGA.QG.A5Z2	9	192128	141071474	40286	-0.0007	NEUTRAL	NA	751	Too-Many
TCGA.RU.A8FL	9	192128	141071474	40588	-0.0025	NEUTRAL	NA	751	Too-Many
TCGA.WS.AB45	9	192128	141071474	40593	0.1629	NEUTRAL	NA	751	Too-Many
TCGA.A6.3808.01A	9	214478	2058249	79	-0.1081	NEUTRAL	NA	7	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1,SMARCA2"
TCGA.AA.3862.01A	9	214478	17235609	648	-0.1979	NEUTRAL	NA	52	"AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.3605.01A	9	214478	129739901	109	0.0132	NEUTRAL	NA	534	Too-Many
TCGA.A6.6653	9	217396	36957632	16050	0.0004	NEUTRAL	NA	179	Too-Many
TCGA.A6.A56B	9	239666	2783927	1846	0.3255	NEUTRAL	NA	8	"DMRT1,DMRT2,DMRT3,DOCK8,KANK1,KCNV2,SMARCA2,VLDLR"
TCGA.AA.3850	9	242796	1062217	545	0.33585	NEUTRAL	NA	5	"DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.A6.2671	9	249390	489337	191	0.1157	NEUTRAL	NA	2	"DOCK8,KANK1"
TCGA.AA.3811	9	272949	1138615	581	0.2961	NEUTRAL	NA	5	"DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.AG.3891.01A	9	286409	4564303	168	-0.1244	NEUTRAL	NA	12	"DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,KANK1,KCNV2,KIAA0020,RFX3,SLC1A1,SMARCA2,VLDLR"
TCGA.AA.A00D.01A	9	338953	446328	32	-0.2428	NEUTRAL	NA	1	DOCK8
TCGA.AA.3982	9	353377	1058913	466	0.2056	NEUTRAL	NA	5	"DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.CK.5914.01A	9	390422	989958	45	0.2592	NEUTRAL	NA	4	"DMRT1,DMRT3,DOCK8,KANK1"
TCGA.AA.3869	9	396292	141071474	40441	0.3029	NEUTRAL	NA	750	Too-Many
TCGA.AA.A017.01A	9	414750	740785	29	0.0176	NEUTRAL	NA	2	"DOCK8,KANK1"
TCGA.AA.A00A.01A	9	418031	15510051	439	0.0367	NEUTRAL	NA	47	"AK3,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.A015.01A	9	418031	33443712	1032	-0.1407	NEUTRAL	NA	115	Too-Many
TCGA.AA.A01Q.01A	9	441237	5029735	159	0.0477	NEUTRAL	NA	18	"AK3,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,JAK2,KANK1,KCNV2,KIAA0020,PPAPDC2,RCL1,RFX3,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AA.A00D.01A	9	449742	2651369	70	0.0448	NEUTRAL	NA	7	"DMRT1,DMRT2,DMRT3,DOCK8,KANK1,SMARCA2,VLDLR"
TCGA.AA.A00N.01A	9	452004	1051647	24	0.1686	NEUTRAL	NA	5	"DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.5M.AAT5	9	501432	531825	13	0.2607	NEUTRAL	NA	1	KANK1
TCGA.5M.AATA	9	531564	141071474	40359	-0.0121	NEUTRAL	NA	749	Too-Many
TCGA.5M.AAT5	9	532742	115670987	32468	-0.1498	NEUTRAL	NA	433	Too-Many
TCGA.A6.2671	9	555771	592076	27	-0.0836	NEUTRAL	NA	1	KANK1
TCGA.A6.2672	9	593898	16050346	7872	0.0463	NEUTRAL	NA	47	"AK3,CCDC171,CD274,CDC37L1,CER1,DMRT1,DMRT2,DMRT3,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.A6.5665	9	593898	126717457	36678	0.0164	NEUTRAL	NA	510	Too-Many
TCGA.3L.AA1B	9	612356	776472	107	-0.4527	NEUTRAL	NA	1	KANK1
TCGA.A6.2681	9	670942	107034645	28817	-0.0026	NEUTRAL	NA	380	Too-Many
TCGA.AA.A017.01A	9	742158	2119397	36	-0.3379	NEUTRAL	NA	5	"DMRT1,DMRT2,DMRT3,KANK1,SMARCA2"
TCGA.A6.2671	9	764127	922573	94	0.0793	NEUTRAL	NA	1	DMRT1
TCGA.3L.AA1B	9	781114	141071474	40177	-0.0596	NEUTRAL	NA	748	Too-Many
TCGA.A6.2671	9	933881	1063479	69	0.2153	NEUTRAL	NA	3	"DMRT1,DMRT2,DMRT3"
TCGA.AG.A00C.01A	9	967984	2060774	12	0.333	NEUTRAL	NA	4	"DMRT1,DMRT2,DMRT3,SMARCA2"
TCGA.CK.5914.01A	9	1053690	2070344	12	-0.5134	NEUTRAL	NA	2	"DMRT2,SMARCA2"
TCGA.AA.3982	9	1062217	1531304	394	-0.1808	NEUTRAL	NA	0	None
TCGA.AA.3850	9	1062675	3282408	1580	-0.22045	NEUTRAL	NA	5	"KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.A6.2671	9	1124321	1373160	191	0.0491	NEUTRAL	NA	0	None
TCGA.AA.3811	9	1141313	1404429	212	0.0178	NEUTRAL	NA	0	None
TCGA.AZ.4315	9	1413397	16895896	7806	0.004	NEUTRAL	NA	45	"AK3,BNC2,C9orf92,CCDC171,CD274,CDC37L1,CER1,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3811	9	1413539	1533936	117	-0.0364	NEUTRAL	NA	0	None
TCGA.A6.2683	9	1454199	141071474	39688	-0.0115	NEUTRAL	NA	745	Too-Many
TCGA.AA.3530	9	1554533	3125842	1082	-0.0483	NEUTRAL	NA	4	"KCNV2,KIAA0020,SMARCA2,VLDLR"
TCGA.AA.3982	9	1554533	3282408	1165	-0.1277	NEUTRAL	NA	5	"KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.AA.3811	9	1554753	3160717	1109	0.0535	NEUTRAL	NA	4	"KCNV2,KIAA0020,SMARCA2,VLDLR"
TCGA.AA.3870	9	1555813	2084738	380	-0.1725	NEUTRAL	NA	1	SMARCA2
TCGA.D5.6931	9	1774036	141071474	39352	-1.00E-04	NEUTRAL	NA	745	Too-Many
TCGA.AA.3697	9	1819271	141071474	39363	-0.2645	NEUTRAL	NA	745	Too-Many
TCGA.AG.4009.01A	9	2047188	2073172	7	-0.385	NEUTRAL	NA	1	SMARCA2
TCGA.AA.A00N.01A	9	2070344	2843996	61	0.356	NEUTRAL	NA	4	"KCNV2,KIAA0020,SMARCA2,VLDLR"
TCGA.AG.A00C.01A	9	2070344	4622356	105	-0.2125	NEUTRAL	NA	8	"GLIS3,KCNV2,KIAA0020,RFX3,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AA.A010.01A	9	2070344	5044354	154	0.1087	NEUTRAL	NA	13	"AK3,CDC37L1,GLIS3,JAK2,KCNV2,KIAA0020,PPAPDC2,RCL1,RFX3,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AG.4009.01A	9	2073514	5029735	132	0.0609	NEUTRAL	NA	13	"AK3,CDC37L1,GLIS3,JAK2,KCNV2,KIAA0020,PPAPDC2,RCL1,RFX3,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AA.3870	9	2091913	6536952	2253	-0.0308	NEUTRAL	NA	29	"AK3,CD274,CDC37L1,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KCNV2,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TPD52L3,UHRF2,VLDLR"
TCGA.AA.A017.01A	9	2123687	6610172	259	0.121	NEUTRAL	NA	29	"AK3,CD274,CDC37L1,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KCNV2,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TPD52L3,UHRF2,VLDLR"
TCGA.AD.6888	9	2152114	89852686	22094	-0.3247	NEUTRAL	NA	272	Too-Many
TCGA.CK.5914.01A	9	2192620	3012856	45	0.1375	NEUTRAL	NA	4	"KCNV2,KIAA0020,SMARCA2,VLDLR"
TCGA.DC.6158	9	2455612	2892881	254	0.0706	NEUTRAL	NA	3	"KCNV2,KIAA0020,VLDLR"
TCGA.A6.2671	9	2540324	2839825	169	0.2592	NEUTRAL	NA	3	"KCNV2,KIAA0020,VLDLR"
TCGA.AG.3909.01A	9	2635406	2729405	17	-0.1917	NEUTRAL	NA	2	"KCNV2,VLDLR"
TCGA.AA.A00O.01A	9	2650322	139302236	5653	-0.0475	NEUTRAL	NA	679	Too-Many
TCGA.AA.A00D.01A	9	2651818	4582986	60	-0.2691	NEUTRAL	NA	6	"GLIS3,KCNV2,KIAA0020,RFX3,SLC1A1,VLDLR"
TCGA.AA.A00Z.01A	9	2717739	128000892	91	-0.226	NEUTRAL	NA	518	Too-Many
TCGA.AF.A56K	9	2720546	15154849	5992	0.0543	NEUTRAL	NA	37	"AK3,CD274,CDC37L1,CER1,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SPATA6L,TMEM261,TPD52L3,TYRP1,UHRF2,ZDHHC21"
TCGA.A6.A56B	9	2786647	3249105	264	-0.0294	NEUTRAL	NA	2	"KIAA0020,RFX3"
TCGA.AG.3909.01A	9	2804279	4635227	64	0.3597	NEUTRAL	NA	5	"GLIS3,KIAA0020,RFX3,SLC1A1,SPATA6L"
TCGA.AA.3509.01A	9	2843996	3225004	13	-0.2282	NEUTRAL	NA	2	"KIAA0020,RFX3"
TCGA.AZ.4684.01A	9	2843996	3225004	13	-0.0556	NEUTRAL	NA	2	"KIAA0020,RFX3"
TCGA.A6.2671	9	2890450	2969876	62	0.084	NEUTRAL	NA	0	None
TCGA.AA.3530	9	3134737	3160717	17	0.1332	NEUTRAL	NA	0	None
TCGA.AA.3989	9	3171898	4287233	622	-0.0208	NEUTRAL	NA	2	"GLIS3,RFX3"
TCGA.AA.3811	9	3176004	3418250	93	0.0054	NEUTRAL	NA	1	RFX3
TCGA.AA.3864	9	3176004	3418250	93	-0.0481	NEUTRAL	NA	1	RFX3
TCGA.AA.3530	9	3176004	7724891	2249	0.0206	NEUTRAL	NA	26	"AK3,CD274,CDC37L1,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SPATA6L,TPD52L3,UHRF2"
TCGA.A6.A56B	9	3249505	22481285	8873	0.3457	NEUTRAL	NA	76	"ACER2,ADAMTSL1,AK3,BNC2,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,ZDHHC21"
TCGA.AA.3982	9	3294226	7456294	2030	-0.0066	NEUTRAL	NA	26	"AK3,CD274,CDC37L1,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SPATA6L,TPD52L3,UHRF2"
TCGA.AA.3850	9	3302355	7412039	2009	-0.00625	NEUTRAL	NA	26	"AK3,CD274,CDC37L1,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SPATA6L,TPD52L3,UHRF2"
TCGA.AA.3509.01A	9	3323930	5021987	65	-0.0636	NEUTRAL	NA	9	"AK3,CDC37L1,GLIS3,JAK2,PPAPDC2,RCL1,RFX3,SLC1A1,SPATA6L"
TCGA.AZ.4684.01A	9	3346620	5021987	62	-0.0173	NEUTRAL	NA	9	"AK3,CDC37L1,GLIS3,JAK2,PPAPDC2,RCL1,RFX3,SLC1A1,SPATA6L"
TCGA.AA.3864	9	3460841	4287233	523	-0.0294	NEUTRAL	NA	2	"GLIS3,RFX3"
TCGA.AA.3811	9	3473359	4287210	519	0.1186	NEUTRAL	NA	2	"GLIS3,RFX3"
TCGA.A6.2671	9	3529410	3704359	54	0.039	NEUTRAL	NA	0	None
TCGA.DC.6158	9	3649096	4349211	533	-0.3006	NEUTRAL	NA	1	GLIS3
TCGA.A6.2671	9	3957865	4029008	63	0.1797	NEUTRAL	NA	1	GLIS3
TCGA.AG.3883	9	4005591	4036448	45	0.3284	NEUTRAL	NA	1	GLIS3
TCGA.AG.3883	9	4038227	5742400	861	0.0138	NEUTRAL	NA	16	"AK3,CD274,CDC37L1,GLIS3,INSL4,INSL6,JAK2,PDCD1LG2,PLGRKT,PPAPDC2,RCL1,RIC1,RLN1,RLN2,SLC1A1,SPATA6L"
TCGA.AA.A00N.01A	9	4117730	4561409	6	-0.1097	NEUTRAL	NA	2	"GLIS3,SLC1A1"
TCGA.AA.A01Z	9	4230610	141071474	37909	0.0069	NEUTRAL	NA	740	Too-Many
TCGA.AA.3811	9	4293323	7404318	1435	0.2458	NEUTRAL	NA	25	"AK3,CD274,CDC37L1,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RIC1,RLN1,RLN2,SLC1A1,SPATA6L,TPD52L3,UHRF2"
TCGA.AA.3864	9	4293323	18224771	6566	-0.0694	NEUTRAL	NA	42	"AK3,BNC2,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RIC1,RLN1,RLN2,SH3GL2,SLC1A1,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,ZDHHC21"
TCGA.AA.3989	9	4293323	37312953	13425	-0.0212	NEUTRAL	NA	170	Too-Many
TCGA.G4.6309	9	4328193	141071474	37778	0.0023	NEUTRAL	NA	739	Too-Many
TCGA.DC.6158	9	4353553	4516254	91	0.0144	NEUTRAL	NA	1	SLC1A1
TCGA.F5.6814	9	4383218	14072863	4540	0.2322	NEUTRAL	NA	29	"AK3,CD274,CDC37L1,ERMP1,GLDC,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,LURAP1L,MLANA,MPDZ,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RIC1,RLN1,RLN2,SLC1A1,SPATA6L,TMEM261,TPD52L3,TYRP1,UHRF2"
TCGA.DC.6158	9	4519988	4761806	141	-0.294	NEUTRAL	NA	5	"AK3,CDC37L1,PPAPDC2,SLC1A1,SPATA6L"
TCGA.CK.5914.01A	9	4573869	4635227	14	0.1954	NEUTRAL	NA	2	"SLC1A1,SPATA6L"
TCGA.AG.3891.01A	9	4575951	19060079	497	-0.1869	NEUTRAL	NA	45	"ADAMTSL1,AK3,BNC2,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,ERMP1,FREM1,GLDC,HAUS6,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RIC1,RLN1,RLN2,RRAGA,SAXO1,SH3GL2,SLC1A1,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,ZDHHC21"
TCGA.AA.A00D.01A	9	4585271	5044354	27	0.0384	NEUTRAL	NA	7	"AK3,CDC37L1,JAK2,PPAPDC2,RCL1,SLC1A1,SPATA6L"
TCGA.AA.A00N.01A	9	4604137	4635227	9	0.2199	NEUTRAL	NA	1	SPATA6L
TCGA.AG.A00C.01A	9	4679717	5021987	22	0.0597	NEUTRAL	NA	4	"AK3,CDC37L1,JAK2,RCL1"
TCGA.AA.A00N.01A	9	4697059	5021987	21	0.1722	NEUTRAL	NA	4	"AK3,CDC37L1,JAK2,RCL1"
TCGA.AG.3909.01A	9	4701847	5021987	18	0.1648	NEUTRAL	NA	4	"AK3,CDC37L1,JAK2,RCL1"
TCGA.AA.A02H.01A	9	4705959	26861001	644	0.222	NEUTRAL	NA	76	"ACER2,ADAMTSL1,AK3,BNC2,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,IZUMO3,JAK2,KDM4C,KIAA2026,KLHL9,LOC100506422,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PSIP1,PTPRD,RANBP6,RCL1,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,ZDHHC21"
TCGA.AD.A5EK	9	4748097	4761806	5	-0.2264	NEUTRAL	NA	0	None
TCGA.DC.6158	9	4772327	4894105	87	0.0624	NEUTRAL	NA	1	RCL1
TCGA.AA.A01Q.01A	9	5044354	5122952	17	-0.3386	NEUTRAL	NA	1	JAK2
TCGA.CK.5914.01A	9	5054526	5077406	9	0.0477	NEUTRAL	NA	1	JAK2
TCGA.AG.4009.01A	9	5122952	5967971	77	0.0519	NEUTRAL	NA	12	"CD274,ERMP1,INSL4,INSL6,JAK2,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RIC1,RLN1,RLN2"
TCGA.AA.A010.01A	9	5122952	8521240	187	0.1285	NEUTRAL	NA	20	"CD274,ERMP1,GLDC,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PTPRD,RANBP6,RIC1,RLN1,RLN2,TMEM261,TPD52L3,UHRF2"
TCGA.AG.3909.01A	9	5126284	6610172	126	0.2145	NEUTRAL	NA	17	"CD274,ERMP1,GLDC,IL33,INSL4,INSL6,JAK2,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,RLN2,TPD52L3,UHRF2"
TCGA.AA.A01Q.01A	9	5126284	33246587	646	0.1145	NEUTRAL	NA	93	"ACER2,ACO1,ADAMTSL1,APTX,B4GALT1,BNC2,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDKN2A,CDKN2B,CER1,CNTLN,DDX58,DENND4C,DMRTA1,DNAJA1,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KDM4C,KIAA2026,KLHL9,LINGO2,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NDUFB6,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PSIP1,PTPRD,RANBP6,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SMU1,SNAPC3,SPINK4,TAF1L,TEK,TMEM215,TMEM261,TOPORS,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,ZDHHC21"
TCGA.AG.A00C.01A	9	5126634	6610172	124	-0.1225	NEUTRAL	NA	17	"CD274,ERMP1,GLDC,IL33,INSL4,INSL6,JAK2,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,RLN2,TPD52L3,UHRF2"
TCGA.AA.A00D.01A	9	5163992	7798504	140	0.0053	NEUTRAL	NA	18	"CD274,ERMP1,GLDC,IL33,INSL4,INSL6,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,RLN2,TMEM261,TPD52L3,UHRF2"
TCGA.DC.6158	9	5174828	6788084	546	-0.2636	NEUTRAL	NA	17	"CD274,ERMP1,GLDC,IL33,INSL4,INSL6,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,RLN2,TPD52L3,UHRF2"
TCGA.G4.6298	9	5236821	6011756	260	-0.4953	NEUTRAL	NA	10	"CD274,ERMP1,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,RLN2"
TCGA.EI.7004	9	5346151	39184064	13471	0.3069	NEUTRAL	NA	173	Too-Many
TCGA.G4.6299	9	5362027	8289349	1480	-0.0256	NEUTRAL	NA	14	"CD274,ERMP1,GLDC,IL33,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,TMEM261,TPD52L3,UHRF2"
TCGA.AG.3883	9	5742449	5895585	57	-0.3063	NEUTRAL	NA	3	"ERMP1,MLANA,RIC1"
TCGA.AA.A00F.01A	9	5812842	6012353	13	0.3371	NEUTRAL	NA	4	"ERMP1,KIAA2026,MLANA,RANBP6"
TCGA.AG.3883	9	5900340	24141941	8230	0.0685	NEUTRAL	NA	59	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,ELAVL2,FOCAD,FREM1,GLDC,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,KDM4C,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PLIN2,PSIP1,PTPRD,RANBP6,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,ZDHHC21"
TCGA.AA.A01S	9	5932615	12710662	3283	0.01675	NEUTRAL	NA	10	"GLDC,IL33,KDM4C,KIAA2026,PTPRD,RANBP6,TMEM261,TPD52L3,TYRP1,UHRF2"
TCGA.G4.6298	9	6012733	141071474	37146	0	NEUTRAL	NA	721	Too-Many
TCGA.AA.A00F.01A	9	6241654	6594967	41	0.0931	NEUTRAL	NA	4	"GLDC,IL33,TPD52L3,UHRF2"
TCGA.AG.4009.01A	9	6241654	15192536	223	0.0834	NEUTRAL	NA	15	"CER1,FREM1,GLDC,IL33,KDM4C,LURAP1L,MPDZ,NFIB,PTPRD,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,ZDHHC21"
TCGA.AG.A02X.01A	9	6255920	130485401	4548	0.161	NEUTRAL	NA	514	Too-Many
TCGA.AZ.4684.01A	9	6413464	6805577	45	-0.142	NEUTRAL	NA	3	"GLDC,KDM4C,UHRF2"
TCGA.AA.3509.01A	9	6413464	7799410	68	-0.1068	NEUTRAL	NA	4	"GLDC,KDM4C,TMEM261,UHRF2"
TCGA.AA.3870	9	6544765	35414844	11968	0.2955	NEUTRAL	NA	116	Too-Many
TCGA.AA.A01C.01A	9	6620153	6814579	6	-0.4491	NEUTRAL	NA	2	"GLDC,KDM4C"
TCGA.AG.3909.01A	9	6849480	6879935	2	-0.1349	NEUTRAL	NA	1	KDM4C
TCGA.AG.A00C.01A	9	6849480	14639857	119	-0.2836	NEUTRAL	NA	8	"KDM4C,LURAP1L,MPDZ,NFIB,PTPRD,TMEM261,TYRP1,ZDHHC21"
TCGA.AA.A017.01A	9	6879935	13110593	67	0.2582	NEUTRAL	NA	6	"KDM4C,LURAP1L,MPDZ,PTPRD,TMEM261,TYRP1"
TCGA.AA.A00F.01A	9	6893048	19032799	189	-0.0695	NEUTRAL	NA	20	"ADAMTSL1,BNC2,C9orf92,CCDC171,CER1,CNTLN,FREM1,KDM4C,LURAP1L,MPDZ,NFIB,PSIP1,PTPRD,SAXO1,SH3GL2,SNAPC3,TMEM261,TTC39B,TYRP1,ZDHHC21"
TCGA.AG.A01Y	9	6902403	141071474	36766	-0.0007	NEUTRAL	NA	716	Too-Many
TCGA.DM.A1HB	9	6929052	7007045	56	-0.38	NEUTRAL	NA	1	KDM4C
TCGA.DC.6158	9	6942258	7329785	313	0.1205	NEUTRAL	NA	1	KDM4C
TCGA.EI.6508	9	7008731	23659506	7661	0.0363	NEUTRAL	NA	51	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,FOCAD,FREM1,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KDM4C,KLHL9,LURAP1L,MLLT3,MPDZ,MTAP,NFIB,PLIN2,PSIP1,PTPRD,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TMEM261,TTC39B,TYRP1,ZDHHC21"
TCGA.DM.A1HB	9	7012611	12248418	2648	-0.0568	NEUTRAL	NA	3	"KDM4C,PTPRD,TMEM261"
TCGA.DC.6158	9	7330229	141071474	36392	-0.3022	NEUTRAL	NA	715	Too-Many
TCGA.AA.3811	9	7405365	12816041	2593	-0.2016	NEUTRAL	NA	4	"LURAP1L,PTPRD,TMEM261,TYRP1"
TCGA.AA.3982	9	7463410	12739131	2532	-0.4693	NEUTRAL	NA	3	"PTPRD,TMEM261,TYRP1"
TCGA.AA.3530	9	7729206	8102542	203	-0.1257	NEUTRAL	NA	1	TMEM261
TCGA.AA.A00D.01A	9	7799410	14306971	55	-0.3341	NEUTRAL	NA	6	"LURAP1L,MPDZ,NFIB,PTPRD,TMEM261,TYRP1"
TCGA.AA.3530	9	8118296	8177861	50	-0.0697	NEUTRAL	NA	0	None
TCGA.AA.3530	9	8182213	118397967	29192	0	NEUTRAL	NA	428	Too-Many
TCGA.AA.3866	9	8182213	141071474	35973	0.0678	NEUTRAL	NA	714	Too-Many
TCGA.AA.A00L.01A	9	8319783	12821373	40	-0.3448	NEUTRAL	NA	3	"LURAP1L,PTPRD,TYRP1"
TCGA.G4.6299	9	8320500	25871448	7506	-0.0063	NEUTRAL	NA	52	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,ELAVL2,FOCAD,FREM1,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IZUMO3,KLHL9,LURAP1L,MLLT3,MPDZ,MTAP,NFIB,PLIN2,PSIP1,PTPRD,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TTC39B,TUSC1,TYRP1,ZDHHC21"
TCGA.AA.A010.01A	9	8633286	13136035	27	0.2426	NEUTRAL	NA	4	"LURAP1L,MPDZ,PTPRD,TYRP1"
TCGA.CA.5254	9	8822266	21296367	5677	0.0129	NEUTRAL	NA	37	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CER1,CNTLN,DENND4C,FOCAD,FREM1,HACD4,HAUS6,IFNA10,IFNA14,IFNA16,IFNA17,IFNA21,IFNA4,IFNA7,IFNB1,IFNW1,LURAP1L,MLLT3,MPDZ,NFIB,PLIN2,PSIP1,PTPRD,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TTC39B,TYRP1,ZDHHC21"
TCGA.EI.6507	9	9476651	141071474	35249	-0.0006	NEUTRAL	NA	714	Too-Many
TCGA.AG.3896	9	9486639	140939898	35150	0.3663	NEUTRAL	NA	714	Too-Many
TCGA.BM.6198	9	10284968	87884686	17115	0.04815	NEUTRAL	NA	233	Too-Many
TCGA.AD.6889	9	10524291	100158051	20992	0.0135	NEUTRAL	NA	305	Too-Many
TCGA.AG.3901	9	11020590	99508064	20676	0.0542	NEUTRAL	NA	299	Too-Many
TCGA.AA.3848	9	11996758	19478971	3509	0.0433	NEUTRAL	NA	23	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CER1,CNTLN,DENND4C,FREM1,HAUS6,LURAP1L,MPDZ,NFIB,PLIN2,PSIP1,RPS6,RRAGA,SAXO1,SH3GL2,SNAPC3,TTC39B,TYRP1,ZDHHC21"
TCGA.A6.2680	9	11996830	141071474	34134	0.0069	NEUTRAL	NA	713	Too-Many
TCGA.AY.A71X	9	12113594	72813680	11016	0.0127	NEUTRAL	NA	188	Too-Many
TCGA.DM.A1HB	9	12261387	12299199	25	-0.0611	NEUTRAL	NA	0	None
TCGA.DM.A1HB	9	12309626	12763000	183	-0.0417	NEUTRAL	NA	1	TYRP1
TCGA.AA.3967.01A	9	12702223	13222205	45	0.0377	NEUTRAL	NA	3	"LURAP1L,MPDZ,TYRP1"
TCGA.AA.3982	9	12746650	22168127	4247	-0.1362	NEUTRAL	NA	46	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,FOCAD,FREM1,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,LURAP1L,MLLT3,MPDZ,MTAP,NFIB,PLIN2,PSIP1,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TTC39B,ZDHHC21"
TCGA.AA.3811	9	12816520	23808909	4786	0.0516	NEUTRAL	NA	48	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,ELAVL2,FOCAD,FREM1,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,LURAP1L,MLLT3,MPDZ,MTAP,NFIB,PLIN2,PSIP1,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TTC39B,ZDHHC21"
TCGA.DM.A1HB	9	12823503	141071474	33162	0	NEUTRAL	NA	711	Too-Many
TCGA.AA.3842	9	12907792	27629388	6209	-0.5007	NEUTRAL	NA	59	"ACER2,ADAMTSL1,BNC2,C9orf72,C9orf92,CAAP1,CCDC171,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,ELAVL2,EQTN,FOCAD,FREM1,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IZUMO3,KLHL9,LOC100506422,LRRC19,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PLAA,PLIN2,PSIP1,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TEK,TTC39B,TUSC1,ZDHHC21"
TCGA.T9.A92H	9	12934850	141071474	33794	-0.2921	NEUTRAL	NA	711	Too-Many
TCGA.AA.A00L.01A	9	13121709	15510051	74	-0.0673	NEUTRAL	NA	8	"CER1,FREM1,MPDZ,NFIB,PSIP1,SNAPC3,TTC39B,ZDHHC21"
TCGA.AA.A010.01A	9	13136655	14179656	43	-0.48	NEUTRAL	NA	2	"MPDZ,NFIB"
TCGA.AA.A017.01A	9	13247582	134390773	4901	0.0011	NEUTRAL	NA	580	Too-Many
TCGA.D5.6532	9	13435925	141071474	33625	0.006	NEUTRAL	NA	710	Too-Many
TCGA.F5.6814	9	14072895	141071474	33229	-0.0711	NEUTRAL	NA	710	Too-Many
TCGA.CK.5914.01A	9	14179656	15422836	69	0.3664	NEUTRAL	NA	6	"CER1,FREM1,NFIB,SNAPC3,TTC39B,ZDHHC21"
TCGA.AA.3850	9	14198370	14233301	15	0.36355	NEUTRAL	NA	1	NFIB
TCGA.AA.3850	9	14244375	14596591	210	-0.03905	NEUTRAL	NA	1	NFIB
TCGA.AA.3509.01A	9	14305908	17143234	133	0.1318	NEUTRAL	NA	11	"BNC2,C9orf92,CCDC171,CER1,CNTLN,FREM1,NFIB,PSIP1,SNAPC3,TTC39B,ZDHHC21"
TCGA.AG.3909.01A	9	14306971	14639857	5	-0.1113	NEUTRAL	NA	2	"NFIB,ZDHHC21"
TCGA.AA.A00D.01A	9	14313419	19550105	185	0.0686	NEUTRAL	NA	21	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CER1,CNTLN,DENND4C,FREM1,HAUS6,NFIB,PLIN2,PSIP1,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TTC39B,ZDHHC21"
TCGA.AA.A010.01A	9	14618912	14792693	25	-0.3382	NEUTRAL	NA	3	"CER1,FREM1,ZDHHC21"
TCGA.AA.3850	9	14694210	15711233	405	0.13195	NEUTRAL	NA	6	"CCDC171,CER1,FREM1,PSIP1,SNAPC3,TTC39B"
TCGA.AG.A00C.01A	9	14720069	15171966	39	-0.2816	NEUTRAL	NA	3	"CER1,FREM1,TTC39B"
TCGA.AA.A010.01A	9	14797444	15422836	39	0.3006	NEUTRAL	NA	3	"FREM1,SNAPC3,TTC39B"
TCGA.AF.A56K	9	15159927	18224693	1456	-0.0036	NEUTRAL	NA	8	"BNC2,C9orf92,CCDC171,CNTLN,PSIP1,SH3GL2,SNAPC3,TTC39B"
TCGA.AG.A00C.01A	9	15174970	15267843	17	0.0026	NEUTRAL	NA	1	TTC39B
TCGA.AG.4009.01A	9	15199790	15423847	8	-0.3294	NEUTRAL	NA	2	"SNAPC3,TTC39B"
TCGA.AA.A01C.01A	9	15199790	15459679	15	-0.0536	NEUTRAL	NA	2	"SNAPC3,TTC39B"
TCGA.AA.A00N.01A	9	15210028	15422836	7	-0.2953	NEUTRAL	NA	2	"SNAPC3,TTC39B"
TCGA.AG.3909.01A	9	15211214	15422836	5	-0.047	NEUTRAL	NA	2	"SNAPC3,TTC39B"
TCGA.AG.A00C.01A	9	15451263	15784468	40	0.0113	NEUTRAL	NA	3	"CCDC171,PSIP1,SNAPC3"
TCGA.AG.3909.01A	9	15451263	17366568	65	-0.0337	NEUTRAL	NA	6	"BNC2,C9orf92,CCDC171,CNTLN,PSIP1,SNAPC3"
TCGA.AG.4009.01A	9	15457907	15510051	17	-0.2283	NEUTRAL	NA	2	"PSIP1,SNAPC3"
TCGA.AA.A00N.01A	9	15457907	15727855	32	-0.3164	NEUTRAL	NA	3	"CCDC171,PSIP1,SNAPC3"
TCGA.AG.3906.01A	9	15465448	19057911	118	-0.1474	NEUTRAL	NA	10	"ADAMTSL1,BNC2,C9orf92,CCDC171,CNTLN,HAUS6,PSIP1,RRAGA,SAXO1,SH3GL2"
TCGA.AA.A01C.01A	9	15486786	15588356	8	-0.0649	NEUTRAL	NA	2	"CCDC171,PSIP1"
TCGA.AA.A010.01A	9	15510051	18639215	85	0.0671	NEUTRAL	NA	7	"ADAMTSL1,BNC2,C9orf92,CCDC171,CNTLN,PSIP1,SH3GL2"
TCGA.AG.4009.01A	9	15564008	19423809	155	0.1209	NEUTRAL	NA	13	"ACER2,ADAMTSL1,BNC2,C9orf92,CCDC171,CNTLN,DENND4C,HAUS6,PLIN2,RPS6,RRAGA,SAXO1,SH3GL2"
TCGA.AG.3611.01A	9	15666123	19063459	65	0.1869	NEUTRAL	NA	9	"ADAMTSL1,BNC2,C9orf92,CCDC171,CNTLN,HAUS6,RRAGA,SAXO1,SH3GL2"
TCGA.AG.3594	9	15689758	18333562	1320	-0.0315	NEUTRAL	NA	5	"BNC2,C9orf92,CCDC171,CNTLN,SH3GL2"
TCGA.AA.A00L.01A	9	15727855	19062964	61	-0.0691	NEUTRAL	NA	9	"ADAMTSL1,BNC2,C9orf92,CCDC171,CNTLN,HAUS6,RRAGA,SAXO1,SH3GL2"
TCGA.AA.A00A.01A	9	15727855	19119599	70	0.1114	NEUTRAL	NA	10	"ADAMTSL1,BNC2,C9orf92,CCDC171,CNTLN,HAUS6,PLIN2,RRAGA,SAXO1,SH3GL2"
TCGA.AG.A00C.01A	9	15846658	16582934	9	-0.3793	NEUTRAL	NA	3	"BNC2,C9orf92,CCDC171"
TCGA.AA.A00Q.01A	9	15846658	35675458	710	0.0796	NEUTRAL	NA	110	Too-Many
TCGA.DM.A28A	9	15847096	17459625	779	-0.2365	NEUTRAL	NA	4	"BNC2,C9orf92,CCDC171,CNTLN"
TCGA.AA.3850	9	16022185	17442115	706	0.07765	NEUTRAL	NA	3	"BNC2,C9orf92,CNTLN"
TCGA.A6.2672	9	16055068	98207301	18051	-0.0117	NEUTRAL	NA	280	Too-Many
TCGA.A6.5661	9	16055068	124681857	28154	-0.023	NEUTRAL	NA	434	Too-Many
TCGA.CK.5914.01A	9	16699126	17394550	20	-0.0278	NEUTRAL	NA	2	"BNC2,CNTLN"
TCGA.AG.A00C.01A	9	16727795	17457510	20	0.1605	NEUTRAL	NA	2	"BNC2,CNTLN"
TCGA.G4.6626	9	17186373	17309812	28	0.0379	NEUTRAL	NA	1	CNTLN
TCGA.F4.6570	9	17273730	141071474	31809	0.0573	NEUTRAL	NA	700	Too-Many
TCGA.AA.3930.01A	9	17342306	19057911	60	-0.1084	NEUTRAL	NA	6	"ADAMTSL1,CNTLN,HAUS6,RRAGA,SAXO1,SH3GL2"
TCGA.DM.A28A	9	17462081	25151153	3076	0.2409	NEUTRAL	NA	37	"ACER2,ADAMTSL1,CDKN2A,CDKN2B,CNTLN,DENND4C,DMRTA1,ELAVL2,FOCAD,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IZUMO3,KLHL9,MLLT3,MTAP,PLIN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2"
TCGA.AG.A00C.01A	9	17462909	18950729	48	-0.2764	NEUTRAL	NA	4	"ADAMTSL1,CNTLN,SAXO1,SH3GL2"
TCGA.AA.3862.01A	9	17464478	19056285	50	2.00E-04	NEUTRAL	NA	6	"ADAMTSL1,CNTLN,HAUS6,RRAGA,SAXO1,SH3GL2"
TCGA.AA.3861.01A	9	17484246	19056285	47	-0.0972	NEUTRAL	NA	6	"ADAMTSL1,CNTLN,HAUS6,RRAGA,SAXO1,SH3GL2"
TCGA.DM.A28M.01A	9	17502499	20778635	136	0.2067	NEUTRAL	NA	13	"ACER2,ADAMTSL1,CNTLN,DENND4C,FOCAD,HAUS6,MLLT3,PLIN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2"
TCGA.AA.3850	9	17508773	17628725	60	0.06485	NEUTRAL	NA	1	SH3GL2
TCGA.AA.3850	9	17634919	17650656	13	-0.00125	NEUTRAL	NA	1	SH3GL2
TCGA.AF.6655	9	17636336	17648860	10	0.3211	NEUTRAL	NA	1	SH3GL2
TCGA.AA.3713	9	17648860	141071474	31608	0.0041	NEUTRAL	NA	699	Too-Many
TCGA.AA.3850	9	17660432	17676300	10	0.33385	NEUTRAL	NA	1	SH3GL2
TCGA.AA.3850	9	17717227	17728150	9	-0.27095	NEUTRAL	NA	1	SH3GL2
TCGA.AA.3850	9	17748810	17983597	138	-0.18305	NEUTRAL	NA	1	SH3GL2
TCGA.AA.3488	9	17979577	18885597	511	-0.0091	NEUTRAL	NA	1	ADAMTSL1
TCGA.AA.3850	9	18002204	18678534	343	-0.45595	NEUTRAL	NA	1	ADAMTSL1
TCGA.AZ.4315	9	18102763	141071474	31340	-0.0048	NEUTRAL	NA	698	Too-Many
TCGA.AF.A56K	9	18226608	22866133	1866	0.039	NEUTRAL	NA	33	"ACER2,ADAMTSL1,CDKN2A,CDKN2B,DENND4C,DMRTA1,FOCAD,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MLLT3,MTAP,PLIN2,RPS6,RRAGA,SAXO1,SLC24A2"
TCGA.AA.3864	9	18230590	89678530	14110	-0.0333	NEUTRAL	NA	224	Too-Many
TCGA.AA.3850	9	18679375	18754210	53	0.25115	NEUTRAL	NA	1	ADAMTSL1
TCGA.AA.3941	9	18679375	18917482	177	-0.3268	NEUTRAL	NA	1	ADAMTSL1
TCGA.AA.3850	9	18758204	18806499	55	-0.36625	NEUTRAL	NA	1	ADAMTSL1
TCGA.AG.3909.01A	9	18770582	18795347	4	-0.3562	NEUTRAL	NA	1	ADAMTSL1
TCGA.AA.A00N.01A	9	18770582	18817089	5	-0.4689	NEUTRAL	NA	1	ADAMTSL1
TCGA.D5.6533	9	18805482	37023717	6432	0.1579	NEUTRAL	NA	127	Too-Many
TCGA.AA.3850	9	18806898	18977125	123	0.14325	NEUTRAL	NA	2	"ADAMTSL1,SAXO1"
TCGA.AA.3488	9	18891039	141071474	30892	0.3323	NEUTRAL	NA	698	Too-Many
TCGA.AA.3941	9	18920356	19417670	180	0.1027	NEUTRAL	NA	7	"ACER2,DENND4C,HAUS6,PLIN2,RPS6,RRAGA,SAXO1"
TCGA.AG.A00C.01A	9	19032799	19361792	48	0.0806	NEUTRAL	NA	5	"DENND4C,HAUS6,PLIN2,RRAGA,SAXO1"
TCGA.AA.A00F.01A	9	19049651	19063459	6	0.3544	NEUTRAL	NA	2	"HAUS6,RRAGA"
TCGA.CK.5914.01A	9	19049651	19450439	62	0.0704	NEUTRAL	NA	6	"ACER2,DENND4C,HAUS6,PLIN2,RPS6,RRAGA"
TCGA.AA.A01C.01A	9	19056285	19450439	59	0.2411	NEUTRAL	NA	5	"ACER2,DENND4C,HAUS6,PLIN2,RPS6"
TCGA.AG.3906.01A	9	19060079	19126080	21	0.2485	NEUTRAL	NA	2	"HAUS6,PLIN2"
TCGA.AG.3909.01A	9	19062964	19116265	15	0.1197	NEUTRAL	NA	2	"HAUS6,PLIN2"
TCGA.AG.3891.01A	9	19062964	19126080	20	0.3102	NEUTRAL	NA	2	"HAUS6,PLIN2"
TCGA.AA.3509.01A	9	19062964	19446237	57	-0.31	NEUTRAL	NA	5	"ACER2,DENND4C,HAUS6,PLIN2,RPS6"
TCGA.AZ.4684.01A	9	19062964	19597162	65	-0.17	NEUTRAL	NA	6	"ACER2,DENND4C,HAUS6,PLIN2,RPS6,SLC24A2"
TCGA.AA.A00F.01A	9	19070181	19102474	12	0.0185	NEUTRAL	NA	1	HAUS6
TCGA.AA.A00N.01A	9	19070181	19116265	13	-0.1668	NEUTRAL	NA	2	"HAUS6,PLIN2"
TCGA.AG.3611.01A	9	19102474	27455091	213	0.3036	NEUTRAL	NA	41	"ACER2,CAAP1,CDKN2A,CDKN2B,DENND4C,DMRTA1,ELAVL2,EQTN,FOCAD,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IFT74,IZUMO3,KLHL9,LOC100506422,LRRC19,MLLT3,MOB3B,MTAP,PLAA,PLIN2,RPS6,SLC24A2,TEK,TUSC1"
TCGA.AA.A00L.01A	9	19102474	95373535	1805	0.0178	NEUTRAL	NA	251	Too-Many
TCGA.AA.A00A.01A	9	19120831	19305323	7	-0.373	NEUTRAL	NA	2	"DENND4C,PLIN2"
TCGA.AA.3930.01A	9	19126080	19380093	33	0.0019	NEUTRAL	NA	3	"DENND4C,PLIN2,RPS6"
TCGA.AA.3532	9	19231642	28975705	3783	0.1956	NEUTRAL	NA	42	"ACER2,C9orf72,CAAP1,CDKN2A,CDKN2B,DENND4C,DMRTA1,ELAVL2,EQTN,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IZUMO3,KLHL9,LINGO2,LOC100506422,LRRC19,MLLT3,MOB3B,MTAP,PLAA,RPS6,SLC24A2,TEK,TUSC1"
TCGA.AG.3909.01A	9	19290750	19361792	23	0.174	NEUTRAL	NA	1	DENND4C
TCGA.AA.3861.01A	9	19290750	21142040	112	-0.263	NEUTRAL	NA	9	"ACER2,DENND4C,FOCAD,HACD4,IFNB1,IFNW1,MLLT3,RPS6,SLC24A2"
TCGA.AA.3862.01A	9	19290750	21142040	112	-0.2	NEUTRAL	NA	9	"ACER2,DENND4C,FOCAD,HACD4,IFNB1,IFNW1,MLLT3,RPS6,SLC24A2"
TCGA.AG.3906.01A	9	19290750	27548516	237	-0.0861	NEUTRAL	NA	41	"ACER2,C9orf72,CAAP1,CDKN2A,CDKN2B,DENND4C,DMRTA1,ELAVL2,EQTN,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IZUMO3,KLHL9,LOC100506422,LRRC19,MLLT3,MOB3B,MTAP,PLAA,RPS6,SLC24A2,TEK,TUSC1"
TCGA.AG.3891.01A	9	19290750	33076507	321	-0.1192	NEUTRAL	NA	51	"ACER2,ACO1,APTX,C9orf72,CAAP1,CDKN2A,CDKN2B,DDX58,DENND4C,DMRTA1,DNAJA1,ELAVL2,EQTN,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IZUMO3,KLHL9,LINGO2,LOC100506422,LRRC19,MLLT3,MOB3B,MTAP,NDUFB6,PLAA,RPS6,SLC24A2,SMU1,TAF1L,TEK,TMEM215,TOPORS,TUSC1"
TCGA.AA.A00F.01A	9	19298036	19361792	21	-0.0979	NEUTRAL	NA	1	DENND4C
TCGA.AA.A00A.01A	9	19316367	32989720	267	-0.0229	NEUTRAL	NA	49	"ACER2,ACO1,APTX,C9orf72,CAAP1,CDKN2A,CDKN2B,DDX58,DENND4C,DMRTA1,ELAVL2,EQTN,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IZUMO3,KLHL9,LINGO2,LOC100506422,LRRC19,MLLT3,MOB3B,MTAP,NDUFB6,PLAA,RPS6,SLC24A2,TAF1L,TEK,TMEM215,TOPORS,TUSC1"
TCGA.AA.3519	9	19340520	141071474	30725	-0.0133	NEUTRAL	NA	693	Too-Many
TCGA.AA.A00N.01A	9	19357916	19360235	2	-0.2795	NEUTRAL	NA	1	DENND4C
TCGA.AA.3819	9	19417670	28295780	3472	-0.0146	NEUTRAL	NA	40	"ACER2,C9orf72,CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,EQTN,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IZUMO3,KLHL9,LINGO2,LOC100506422,LRRC19,MLLT3,MOB3B,MTAP,PLAA,SLC24A2,TEK,TUSC1"
TCGA.AA.3941	9	19419445	19647142	107	-0.3205	NEUTRAL	NA	2	"ACER2,SLC24A2"
TCGA.AA.A010.01A	9	19423809	21142040	79	-0.1537	NEUTRAL	NA	7	"ACER2,FOCAD,HACD4,IFNB1,IFNW1,MLLT3,SLC24A2"
TCGA.AG.A00C.01A	9	19446237	27359015	195	-0.1477	NEUTRAL	NA	37	"ACER2,CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,EQTN,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IFT74,IZUMO3,KLHL9,LOC100506422,LRRC19,MLLT3,MOB3B,MTAP,PLAA,SLC24A2,TEK,TUSC1"
TCGA.AA.3850	9	19453701	19649737	95	0.11315	NEUTRAL	NA	1	SLC24A2
TCGA.AA.3848	9	19483041	19510855	14	-0.3937	NEUTRAL	NA	1	SLC24A2
TCGA.AA.3848	9	19511095	25499527	2143	0.0343	NEUTRAL	NA	27	"CDKN2A,CDKN2B,DMRTA1,ELAVL2,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IZUMO3,KLHL9,MLLT3,MTAP,SLC24A2"
TCGA.AG.3909.01A	9	19516112	21011551	68	0.3429	NEUTRAL	NA	4	"FOCAD,HACD4,MLLT3,SLC24A2"
TCGA.AG.4009.01A	9	19516112	27550579	200	0.0276	NEUTRAL	NA	38	"C9orf72,CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,EQTN,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IZUMO3,KLHL9,LOC100506422,LRRC19,MLLT3,MOB3B,MTAP,PLAA,SLC24A2,TEK,TUSC1"
TCGA.AA.A00F.01A	9	19516112	75403205	1063	0.0424	NEUTRAL	NA	175	Too-Many
TCGA.AA.3930.01A	9	19516112	90499806	1909	0.0638	NEUTRAL	NA	220	Too-Many
TCGA.AA.A00D.01A	9	19573307	21802664	87	-0.2872	NEUTRAL	NA	22	"FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MLLT3,MTAP,SLC24A2"
TCGA.AA.3850	9	19650439	22201585	977	-0.34545	NEUTRAL	NA	24	"CDKN2A,CDKN2B,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MLLT3,MTAP,SLC24A2"
TCGA.DY.A1DD	9	19842234	141013720	30512	-0.0355	NEUTRAL	NA	689	Too-Many
TCGA.AA.A00N.01A	9	20995521	26980492	88	0.058	NEUTRAL	NA	30	"CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IFT74,IZUMO3,KLHL9,LOC100506422,MTAP,PLAA,TUSC1"
TCGA.AG.3909.01A	9	21077285	21861908	33	0.2764	NEUTRAL	NA	18	"IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MTAP"
TCGA.AA.A010.01A	9	21165991	27524288	134	0.3748	NEUTRAL	NA	30	"CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,EQTN,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNE,IFT74,IZUMO3,KLHL9,LOC100506422,LRRC19,MOB3B,MTAP,PLAA,TEK,TUSC1"
TCGA.CK.5914.01A	9	21332983	27109518	85	0.1827	NEUTRAL	NA	20	"CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,IFNA1,IFNA13,IFNA2,IFNA6,IFNA8,IFNE,IFT74,IZUMO3,KLHL9,LOC100506422,LRRC19,MTAP,PLAA,TEK,TUSC1"
TCGA.DM.A28M.01A	9	21332983	141109683	6555	0.1889	NEUTRAL	NA	677	Too-Many
TCGA.AF.6655	9	21354179	21362517	3	-0.1956	NEUTRAL	NA	0	None
TCGA.CK.4947	9	21369314	141071474	29873	-0.0152	NEUTRAL	NA	673	Too-Many
TCGA.AA.3861.01A	9	21815385	33367473	247	-0.1736	NEUTRAL	NA	32	"ACO1,APTX,B4GALT1,BAG1,C9orf72,CAAP1,CDKN2A,CDKN2B,CHMP5,DDX58,DMRTA1,DNAJA1,ELAVL2,EQTN,IFNK,IFT74,IZUMO3,LINGO2,LOC100506422,LRRC19,MOB3B,MTAP,NDUFB6,NFX1,PLAA,SMU1,SPINK4,TAF1L,TEK,TMEM215,TOPORS,TUSC1"
TCGA.AA.3862.01A	9	21815385	33385565	251	-0.0856	NEUTRAL	NA	33	"ACO1,APTX,AQP7,B4GALT1,BAG1,C9orf72,CAAP1,CDKN2A,CDKN2B,CHMP5,DDX58,DMRTA1,DNAJA1,ELAVL2,EQTN,IFNK,IFT74,IZUMO3,LINGO2,LOC100506422,LRRC19,MOB3B,MTAP,NDUFB6,NFX1,PLAA,SMU1,SPINK4,TAF1L,TEK,TMEM215,TOPORS,TUSC1"
TCGA.AA.A00D.01A	9	21837884	27455091	80	-0.1091	NEUTRAL	NA	15	"CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,EQTN,IFT74,IZUMO3,LOC100506422,LRRC19,MOB3B,MTAP,PLAA,TEK,TUSC1"
TCGA.A6.2671	9	21908999	141071474	29694	0.0947	NEUTRAL	NA	668	Too-Many
TCGA.AA.A01C.01A	9	21968148	27169436	61	0.2765	NEUTRAL	NA	12	"CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,IFT74,IZUMO3,LOC100506422,LRRC19,PLAA,TEK,TUSC1"
TCGA.AY.A69D	9	22098573	141071474	29594	0.0052	NEUTRAL	NA	666	Too-Many
TCGA.DM.A0XD	9	22128708	22148054	15	0.0779	NEUTRAL	NA	0	None
TCGA.AA.3844	9	22171483	26705814	1578	-0.027	NEUTRAL	NA	5	"DMRTA1,ELAVL2,IZUMO3,LOC100506422,TUSC1"
TCGA.DM.A0XD	9	22176960	24497683	726	-0.0158	NEUTRAL	NA	2	"DMRTA1,ELAVL2"
TCGA.AA.3855	9	22242054	26037973	1286	0.0394	NEUTRAL	NA	4	"DMRTA1,ELAVL2,IZUMO3,TUSC1"
TCGA.AA.3527	9	22293165	141071474	29595	-0.0009	NEUTRAL	NA	666	Too-Many
TCGA.A6.A56B	9	22481752	23066041	195	-0.0496	NEUTRAL	NA	0	None
TCGA.AF.6655	9	22543799	22546001	3	0.2478	NEUTRAL	NA	0	None
TCGA.F4.6461	9	22709755	23973051	452	-0.4567	NEUTRAL	NA	1	ELAVL2
TCGA.AZ.6607	9	22801569	36993070	4896	-0.2357	NEUTRAL	NA	94	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARHGEF39,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,C9orf72,CA9,CAAP1,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CHMP5,CLTA,CNTFR,CREB3,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,DNAJB5,ELAVL2,ENHO,EQTN,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,GALT,GBA2,GLIPR2,GNE,HINT2,HRCT1,IFNK,IFT74,IL11RA,IZUMO3,KIAA1045,KIAA1161,KIF24,LINGO2,LOC100506422,LRRC19,MELK,MOB3B,MSMP,NDUFB6,NFX1,NOL6,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,PLAA,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SIGMAR1,SIT1,SMU1,SPAG8,SPINK4,STOML2,TAF1L,TEK,TESK1,TLN1,TMEM215,TMEM8B,TOPORS,TPM2,TUSC1,UBAP1,UBAP2,UBE2R2,UNC13B,VCP"
TCGA.AG.3594	9	22807217	22813897	4	-0.3047	NEUTRAL	NA	0	None
TCGA.DM.A28F	9	22863948	71387763	5696	-0.0146	NEUTRAL	NA	131	Too-Many
TCGA.A6.A56B	9	23073968	26958438	1392	0.3164	NEUTRAL	NA	7	"CAAP1,ELAVL2,IFT74,IZUMO3,LOC100506422,PLAA,TUSC1"
TCGA.AF.A56K	9	23079237	141071474	29286	-0.072	NEUTRAL	NA	665	Too-Many
TCGA.CA.5254	9	23161267	90934986	12727	-0.0026	NEUTRAL	NA	198	Too-Many
TCGA.DM.A28H	9	23420201	141071474	29180	0.0007	NEUTRAL	NA	665	Too-Many
TCGA.AA.3860	9	23460332	117093028	21887	-0.0342	NEUTRAL	NA	370	Too-Many
TCGA.AD.6901	9	23545954	24272882	244	0.0871	NEUTRAL	NA	1	ELAVL2
TCGA.AG.3909.01A	9	23692504	33001485	154	0.1936	NEUTRAL	NA	21	"ACO1,APTX,C9orf72,CAAP1,DDX58,ELAVL2,EQTN,IFNK,IFT74,IZUMO3,LINGO2,LOC100506422,LRRC19,MOB3B,NDUFB6,PLAA,TAF1L,TEK,TMEM215,TOPORS,TUSC1"
TCGA.EI.6508	9	23802441	141071474	29042	-0.0085	NEUTRAL	NA	665	Too-Many
TCGA.AA.3811	9	23810583	26705814	1012	-0.4355	NEUTRAL	NA	4	"ELAVL2,IZUMO3,LOC100506422,TUSC1"
TCGA.DY.A1DF	9	23874046	23880958	4	-0.1975	NEUTRAL	NA	0	None
TCGA.F4.6461	9	23983629	141071474	28932	-0.0068	NEUTRAL	NA	664	Too-Many
TCGA.DY.A1DF	9	24111279	26521275	836	0.0562	NEUTRAL	NA	3	"IZUMO3,LOC100506422,TUSC1"
TCGA.AG.3883	9	24159114	24908447	220	-0.2901	NEUTRAL	NA	1	IZUMO3
TCGA.A6.6649	9	24520193	141071474	28894	-0.1305	NEUTRAL	NA	664	Too-Many
TCGA.AH.6644	9	24520193	141071474	28840	0.2357	NEUTRAL	NA	664	Too-Many
TCGA.DM.A0XD	9	24520193	141071474	28797	0.001	NEUTRAL	NA	664	Too-Many
TCGA.AG.A01N.01A	9	24543188	141015884	5345	-0.2965	NEUTRAL	NA	664	Too-Many
TCGA.AZ.4684.01A	9	24544141	27047245	42	-0.0395	NEUTRAL	NA	7	"CAAP1,IFT74,IZUMO3,LOC100506422,LRRC19,PLAA,TUSC1"
TCGA.AA.3509.01A	9	24544662	27047245	41	-0.1216	NEUTRAL	NA	7	"CAAP1,IFT74,IZUMO3,LOC100506422,LRRC19,PLAA,TUSC1"
TCGA.AG.3594	9	24881104	25908677	379	0.3345	NEUTRAL	NA	1	TUSC1
TCGA.AG.3883	9	24910505	25499527	215	0.0195	NEUTRAL	NA	0	None
TCGA.AF.3913	9	24934858	24971523	15	-0.0592	NEUTRAL	NA	0	None
TCGA.DM.A28A	9	25153536	69827538	4766	-0.1776	NEUTRAL	NA	123	Too-Many
TCGA.DM.A1D9	9	25438911	26579585	451	-0.015	NEUTRAL	NA	2	"LOC100506422,TUSC1"
TCGA.AG.3883	9	25500237	31656497	2381	-0.2471	NEUTRAL	NA	12	"C9orf72,CAAP1,EQTN,IFNK,IFT74,LINGO2,LOC100506422,LRRC19,MOB3B,PLAA,TEK,TUSC1"
TCGA.AA.3848	9	25509544	25537108	7	-0.0347	NEUTRAL	NA	0	None
TCGA.AA.3666	9	25547129	141071474	28533	0.0782	NEUTRAL	NA	663	Too-Many
TCGA.AA.3848	9	25547656	82572622	8871	0.0275	NEUTRAL	NA	167	Too-Many
TCGA.G4.6299	9	25890596	35466063	3379	0.3181	NEUTRAL	NA	61	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,C9orf72,CAAP1,CCL19,CCL21,CCL27,CHMP5,CNTFR,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,DNAJB5,ENHO,EQTN,FAM205A,FAM214B,FAM219A,FANCG,GALT,IFNK,IFT74,IL11RA,KIAA1045,KIAA1161,KIF24,LINGO2,LOC100506422,LRRC19,MOB3B,NDUFB6,NFX1,NOL6,NUDT2,PIGO,PLAA,PRSS3,RPP25L,SIGMAR1,SMU1,SPINK4,STOML2,TAF1L,TEK,TMEM215,TOPORS,UBAP1,UBAP2,UBE2R2,UNC13B,VCP"
TCGA.AA.3855	9	26051017	37936502	4060	0.0441	NEUTRAL	NA	103	Too-Many
TCGA.AG.3902	9	26114701	26206843	38	-0.1138	NEUTRAL	NA	1	LOC100506422
TCGA.AG.3902	9	26206878	86834718	10050	0.2733	NEUTRAL	NA	178	Too-Many
TCGA.CM.5348	9	26298969	115819869	20372	-0.0196	NEUTRAL	NA	347	Too-Many
TCGA.DM.A1D9	9	26585589	102849538	15223	0.0141	NEUTRAL	NA	275	Too-Many
TCGA.AA.3982	9	26590983	27753922	556	-0.0253	NEUTRAL	NA	9	"C9orf72,CAAP1,EQTN,IFNK,IFT74,LRRC19,MOB3B,PLAA,TEK"
TCGA.AA.3850	9	26590983	27756624	560	0.02775	NEUTRAL	NA	9	"C9orf72,CAAP1,EQTN,IFNK,IFT74,LRRC19,MOB3B,PLAA,TEK"
TCGA.AA.3941	9	26590983	27756624	559	-0.4258	NEUTRAL	NA	9	"C9orf72,CAAP1,EQTN,IFNK,IFT74,LRRC19,MOB3B,PLAA,TEK"
TCGA.AA.3811	9	26706211	27760945	506	0.033	NEUTRAL	NA	9	"C9orf72,CAAP1,EQTN,IFNK,IFT74,LRRC19,MOB3B,PLAA,TEK"
TCGA.AA.A02H.01A	9	26884769	33001485	141	0.0157	NEUTRAL	NA	17	"ACO1,APTX,C9orf72,CAAP1,DDX58,EQTN,IFNK,IFT74,LINGO2,LRRC19,MOB3B,NDUFB6,PLAA,TAF1L,TEK,TMEM215,TOPORS"
TCGA.A6.A56B	9	26972555	94205374	12483	-0.0059	NEUTRAL	NA	206	Too-Many
TCGA.AA.3509.01A	9	27060518	27548516	40	0.1691	NEUTRAL	NA	6	"C9orf72,EQTN,IFNK,IFT74,MOB3B,TEK"
TCGA.A6.3808.01A	9	27109518	33367473	173	0.3285	NEUTRAL	NA	20	"ACO1,APTX,B4GALT1,BAG1,C9orf72,CHMP5,DDX58,DNAJA1,EQTN,IFNK,LINGO2,MOB3B,NDUFB6,NFX1,SMU1,SPINK4,TAF1L,TEK,TMEM215,TOPORS"
TCGA.DY.A1DF	9	27144482	37375125	3461	0.0521	NEUTRAL	NA	87	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARHGEF39,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,C9orf72,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CHMP5,CLTA,CNTFR,CREB3,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,DNAJB5,ENHO,EQTN,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,GALT,GBA2,GLIPR2,GNE,HINT2,HRCT1,IFNK,IL11RA,KIAA1045,KIAA1161,KIF24,LINGO2,MELK,MOB3B,MSMP,NDUFB6,NFX1,NOL6,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SIGMAR1,SIT1,SMU1,SPAG8,SPINK4,STOML2,TAF1L,TEK,TESK1,TLN1,TMEM215,TMEM8B,TOPORS,TPM2,UBAP1,UBAP2,UBE2R2,UNC13B,VCP,ZCCHC7"
TCGA.AA.3844	9	27190654	27756018	321	0.3729	NEUTRAL	NA	5	"C9orf72,EQTN,IFNK,MOB3B,TEK"
TCGA.AG.A00Y.01A	9	27206533	141015884	5410	0.1536	NEUTRAL	NA	657	Too-Many
TCGA.CK.5914.01A	9	27228156	32552332	68	0.3599	NEUTRAL	NA	9	"ACO1,C9orf72,DDX58,EQTN,IFNK,LINGO2,MOB3B,TEK,TOPORS"
TCGA.F5.6464	9	27248726	141071474	27808	0.2493	NEUTRAL	NA	656	Too-Many
TCGA.F5.6465	9	27248726	141071474	27813	-0.0181	NEUTRAL	NA	656	Too-Many
TCGA.AY.5543	9	27249123	28572232	661	0.2735	NEUTRAL	NA	5	"C9orf72,EQTN,IFNK,LINGO2,MOB3B"
TCGA.AA.A01C.01A	9	27284721	140400025	5244	0.1967	NEUTRAL	NA	650	Too-Many
TCGA.AG.A00C.01A	9	27378300	27566628	13	0.267	NEUTRAL	NA	3	"C9orf72,IFNK,MOB3B"
TCGA.CM.6675	9	27497987	141071474	27581	0.0021	NEUTRAL	NA	655	Too-Many
TCGA.AG.3611.01A	9	27524288	32407212	16	-0.1233	NEUTRAL	NA	5	"ACO1,C9orf72,IFNK,LINGO2,MOB3B"
TCGA.AA.A00D.01A	9	27565468	32541338	43	-0.1974	NEUTRAL	NA	5	"ACO1,C9orf72,DDX58,LINGO2,TOPORS"
TCGA.AA.3867	9	27591568	32060451	1592	-0.4106	NEUTRAL	NA	1	LINGO2
TCGA.AA.3842	9	27635479	141071474	27598	0.0519	NEUTRAL	NA	652	Too-Many
TCGA.AA.A01S	9	27669411	35615895	2610	-0.00295	NEUTRAL	NA	55	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,CCL19,CCL21,CCL27,CD72,CHMP5,CNTFR,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,DNAJB5,ENHO,FAM166B,FAM205A,FAM214B,FAM219A,FANCG,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,LINGO2,NDUFB6,NFX1,NOL6,NUDT2,PIGO,PRSS3,RPP25L,RUSC2,SIGMAR1,SMU1,SPINK4,STOML2,TAF1L,TESK1,TMEM215,TOPORS,UBAP1,UBAP2,UBE2R2,UNC13B,VCP"
TCGA.AA.3844	9	27756624	32333057	1644	-0.0056	NEUTRAL	NA	1	LINGO2
TCGA.AA.3811	9	27765415	28446526	359	-0.4358	NEUTRAL	NA	1	LINGO2
TCGA.AG.3906.01A	9	27948817	32500766	39	-0.0152	NEUTRAL	NA	3	"ACO1,DDX58,LINGO2"
TCGA.AG.A00C.01A	9	27948817	32526007	40	-0.2402	NEUTRAL	NA	3	"ACO1,DDX58,LINGO2"
TCGA.AG.4009.01A	9	27948817	33246587	87	0.1428	NEUTRAL	NA	12	"ACO1,APTX,B4GALT1,DDX58,DNAJA1,LINGO2,NDUFB6,SMU1,SPINK4,TAF1L,TMEM215,TOPORS"
TCGA.AG.3592	9	28176867	141071474	27300	0.1635	NEUTRAL	NA	652	Too-Many
TCGA.AA.3819	9	28310569	68324146	3355	0.0059	NEUTRAL	NA	108	Too-Many
TCGA.AA.3982	9	28473653	28841306	126	-0.4816	NEUTRAL	NA	1	LINGO2
TCGA.AA.3811	9	28473653	32275324	1252	-0.4509	NEUTRAL	NA	1	LINGO2
TCGA.AY.5543	9	28734247	34723180	1901	0.2783	NEUTRAL	NA	42	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARID3C,B4GALT1,BAG1,C9orf24,CCL19,CCL21,CCL27,CHMP5,CNTFR,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,ENHO,FAM205A,FAM219A,GALT,IL11RA,KIAA1161,KIF24,LINGO2,NDUFB6,NFX1,NOL6,NUDT2,PRSS3,RPP25L,SIGMAR1,SMU1,SPINK4,TAF1L,TMEM215,TOPORS,UBAP1,UBAP2,UBE2R2"
TCGA.AA.3532	9	28981480	29040150	22	-0.2387	NEUTRAL	NA	1	LINGO2
TCGA.AA.3532	9	29041851	29672050	201	0.1927	NEUTRAL	NA	1	LINGO2
TCGA.CM.6169	9	29383421	31248788	585	-0.4483	NEUTRAL	NA	0	None
TCGA.AA.3532	9	29681486	30478166	246	-0.2959	NEUTRAL	NA	0	None
TCGA.G4.6322	9	29761969	32348845	831	0.0341	NEUTRAL	NA	0	None
TCGA.AA.3693	9	29908463	29969709	32	-0.4434	NEUTRAL	NA	0	None
TCGA.AA.3693	9	29973286	141071474	26652	0.0068	NEUTRAL	NA	651	Too-Many
TCGA.AG.3580	9	30126790	141071474	26605	0.0189	NEUTRAL	NA	651	Too-Many
TCGA.AA.3532	9	30488046	30976509	130	0.2203	NEUTRAL	NA	0	None
TCGA.CM.6169	9	31249988	141071474	26133	-0.1019	NEUTRAL	NA	651	Too-Many
TCGA.D5.6536	9	31470557	141071474	26201	-0.0095	NEUTRAL	NA	651	Too-Many
TCGA.AG.3883	9	31657202	36539263	1423	0.067	NEUTRAL	NA	78	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARHGEF39,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CHMP5,CLTA,CNTFR,CREB3,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,DNAJB5,ENHO,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,GALT,GBA2,GLIPR2,GNE,HINT2,HRCT1,IL11RA,KIAA1045,KIAA1161,KIF24,MSMP,NDUFB6,NFX1,NOL6,NPR2,NUDT2,OR13J1,OR2S2,PIGO,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SIGMAR1,SIT1,SMU1,SPAG8,SPINK4,STOML2,TAF1L,TESK1,TLN1,TMEM215,TMEM8B,TOPORS,TPM2,UBAP1,UBAP2,UBE2R2,UNC13B,VCP"
TCGA.AG.4021	9	31726426	36962558	1572	-0.0208	NEUTRAL	NA	80	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARHGEF39,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CHMP5,CLTA,CNTFR,CREB3,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,DNAJB5,ENHO,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,GALT,GBA2,GLIPR2,GNE,HINT2,HRCT1,IL11RA,KIAA1045,KIAA1161,KIF24,MELK,MSMP,NDUFB6,NFX1,NOL6,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SIGMAR1,SIT1,SMU1,SPAG8,SPINK4,STOML2,TAF1L,TESK1,TLN1,TMEM215,TMEM8B,TOPORS,TPM2,UBAP1,UBAP2,UBE2R2,UNC13B,VCP"
TCGA.AA.3867	9	32068377	75692295	3877	-0.0615	NEUTRAL	NA	137	Too-Many
TCGA.AA.3850	9	32210710	32810136	233	-0.03725	NEUTRAL	NA	6	"ACO1,DDX58,NDUFB6,TAF1L,TMEM215,TOPORS"
TCGA.AA.3811	9	32276751	37171807	1441	0.201	NEUTRAL	NA	81	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARHGEF39,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CHMP5,CLTA,CNTFR,CREB3,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,DNAJB5,ENHO,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,GALT,GBA2,GLIPR2,GNE,HINT2,HRCT1,IL11RA,KIAA1045,KIAA1161,KIF24,MELK,MSMP,NDUFB6,NFX1,NOL6,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SIGMAR1,SIT1,SMU1,SPAG8,SPINK4,STOML2,TAF1L,TESK1,TLN1,TMEM215,TMEM8B,TOPORS,TPM2,UBAP1,UBAP2,UBE2R2,UNC13B,VCP,ZCCHC7"
TCGA.AA.3982	9	32333057	33045160	300	0.0763	NEUTRAL	NA	9	"ACO1,APTX,DDX58,DNAJA1,NDUFB6,SMU1,TAF1L,TMEM215,TOPORS"
TCGA.AA.3941	9	32380193	32909595	229	-0.2829	NEUTRAL	NA	6	"ACO1,DDX58,NDUFB6,TAF1L,TMEM215,TOPORS"
TCGA.AA.3509.01A	9	32405457	88589824	1596	0.0181	NEUTRAL	NA	172	Too-Many
TCGA.AG.3611.01A	9	32408464	33524447	152	0.351	NEUTRAL	NA	18	"ACO1,ANKRD18B,APTX,AQP3,AQP7,B4GALT1,BAG1,CHMP5,DDX58,DNAJA1,NDUFB6,NFX1,NOL6,SMU1,SPINK4,TAF1L,TMEM215,TOPORS"
TCGA.AZ.4684.01A	9	32420815	42368363	815	3.00E-04	NEUTRAL	NA	103	Too-Many
TCGA.AG.3906.01A	9	32526007	32784162	11	-0.4319	NEUTRAL	NA	5	"DDX58,NDUFB6,TAF1L,TMEM215,TOPORS"
TCGA.AA.A00N.01A	9	32541338	33001485	21	-0.2481	NEUTRAL	NA	5	"APTX,NDUFB6,TAF1L,TMEM215,TOPORS"
TCGA.AG.A00C.01A	9	32541338	33071690	36	0.2033	NEUTRAL	NA	7	"APTX,DNAJA1,NDUFB6,SMU1,TAF1L,TMEM215,TOPORS"
TCGA.AA.A00D.01A	9	32550725	33001485	18	0.0376	NEUTRAL	NA	5	"APTX,NDUFB6,TAF1L,TMEM215,TOPORS"
TCGA.CK.5914.01A	9	32553807	33303131	68	-0.2835	NEUTRAL	NA	11	"APTX,B4GALT1,BAG1,CHMP5,DNAJA1,NDUFB6,NFX1,SMU1,SPINK4,TAF1L,TMEM215"
TCGA.EI.6512	9	32746888	73984393	3064	0.008	NEUTRAL	NA	124	Too-Many
TCGA.AG.3906.01A	9	32785498	32989720	8	0.2748	NEUTRAL	NA	2	"APTX,TMEM215"
TCGA.AA.3850	9	32810700	33625081	288	0.33015	NEUTRAL	NA	12	"ANKRD18B,APTX,AQP3,AQP7,B4GALT1,BAG1,CHMP5,DNAJA1,NFX1,NOL6,SMU1,SPINK4"
TCGA.AA.3977	9	32898552	76300736	3678	0.088	NEUTRAL	NA	132	Too-Many
TCGA.AA.3941	9	32910291	33649592	231	0.041	NEUTRAL	NA	12	"ANKRD18B,APTX,AQP3,AQP7,B4GALT1,BAG1,CHMP5,DNAJA1,NFX1,NOL6,SMU1,SPINK4"
TCGA.AG.3890	9	32936381	39184064	1738	0.1319	NEUTRAL	NA	90	"ALDH1B1,ANKRD18A,ANKRD18B,APTX,AQP3,AQP7,ARHGEF39,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CHMP5,CLTA,CNTFR,CNTNAP3,CREB3,DCAF10,DCAF12,DCTN3,DNAI1,DNAJA1,DNAJB5,ENHO,EXOSC3,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,FBXO10,FRMPD1,GALT,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,IL11RA,KIAA1045,KIAA1161,KIF24,MELK,MSMP,NFX1,NOL6,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,POLR1E,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SHB,SIGMAR1,SIT1,SLC25A51,SMU1,SPAG8,SPINK4,STOML2,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,UBAP1,UBAP2,UBE2R2,UNC13B,VCP,ZBTB5,ZCCHC7"
TCGA.G4.6322	9	32967266	125573234	21768	-0.0105	NEUTRAL	NA	397	Too-Many
TCGA.AG.3906.01A	9	33001485	33056784	14	-0.0829	NEUTRAL	NA	3	"APTX,DNAJA1,SMU1"
TCGA.AA.A00D.01A	9	33048052	35310432	286	0.1097	NEUTRAL	NA	42	"ANKRD18B,AQP3,AQP7,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,CCL19,CCL21,CCL27,CHMP5,CNTFR,DCAF12,DCTN3,DNAI1,DNAJB5,ENHO,FAM205A,FAM214B,FAM219A,FANCG,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,NFX1,NOL6,NUDT2,PIGO,PRSS3,RPP25L,SIGMAR1,SMU1,SPINK4,STOML2,UBAP1,UBAP2,UBE2R2,UNC13B,VCP"
TCGA.AA.A00A.01A	9	33048052	123667247	2830	0.0688	NEUTRAL	NA	368	Too-Many
TCGA.AG.3909.01A	9	33053069	33061999	6	-0.3491	NEUTRAL	NA	1	SMU1
TCGA.AA.3982	9	33064335	33274454	91	0.3389	NEUTRAL	NA	5	"B4GALT1,BAG1,CHMP5,SMU1,SPINK4"
TCGA.AA.A00N.01A	9	33068790	33248349	15	0.2178	NEUTRAL	NA	3	"B4GALT1,SMU1,SPINK4"
TCGA.AG.A00C.01A	9	33073547	33248349	13	-0.2483	NEUTRAL	NA	3	"B4GALT1,SMU1,SPINK4"
TCGA.AA.A02H.01A	9	33113414	139340038	4761	-0.0876	NEUTRAL	NA	580	Too-Many
TCGA.AG.3891.01A	9	33135160	35607528	333	0.0955	NEUTRAL	NA	44	"ANKRD18B,AQP3,AQP7,ARID3C,B4GALT1,BAG1,C9orf131,C9orf24,CCL19,CCL21,CCL27,CHMP5,CNTFR,DCAF12,DCTN3,DNAI1,DNAJB5,ENHO,FAM166B,FAM205A,FAM214B,FAM219A,FANCG,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,NFX1,NOL6,NUDT2,PIGO,PRSS3,RPP25L,RUSC2,SIGMAR1,SPINK4,STOML2,TESK1,UBAP1,UBAP2,UBE2R2,UNC13B,VCP"
TCGA.AA.A01Q.01A	9	33248349	33271088	13	-0.4873	NEUTRAL	NA	3	"BAG1,CHMP5,SPINK4"
TCGA.AG.4009.01A	9	33248349	33271088	13	-0.2667	NEUTRAL	NA	3	"BAG1,CHMP5,SPINK4"
TCGA.AG.3906.01A	9	33261057	33265956	5	-0.2376	NEUTRAL	NA	2	"BAG1,CHMP5"
TCGA.AG.3906.01A	9	33267773	33443712	38	0.2978	NEUTRAL	NA	4	"AQP3,AQP7,CHMP5,NFX1"
TCGA.AG.4009.01A	9	33276414	33386920	31	0.2959	NEUTRAL	NA	3	"AQP7,CHMP5,NFX1"
TCGA.AA.A01Q.01A	9	33276414	33395024	32	0.226	NEUTRAL	NA	3	"AQP7,CHMP5,NFX1"
TCGA.AG.A01W.01A	9	33280483	33437373	35	0.0578	NEUTRAL	NA	3	"AQP7,CHMP5,NFX1"
TCGA.AG.A00C.01A	9	33290482	34296973	121	-0.0737	NEUTRAL	NA	11	"ANKRD18B,AQP3,AQP7,DCAF12,KIF24,NFX1,NOL6,PRSS3,UBAP1,UBAP2,UBE2R2"
TCGA.AA.3982	9	33294090	33416379	23	0.1778	NEUTRAL	NA	2	"AQP7,NFX1"
TCGA.CK.5914.01A	9	33307151	33342697	8	0.2997	NEUTRAL	NA	1	NFX1
TCGA.AG.4009.01A	9	33395024	33443712	5	-0.1	NEUTRAL	NA	2	"AQP3,AQP7"
TCGA.AA.A01Q.01A	9	33401148	33464829	10	-0.5098	NEUTRAL	NA	3	"AQP3,AQP7,NOL6"
TCGA.CK.5914.01A	9	33401148	33536829	30	0.209	NEUTRAL	NA	4	"ANKRD18B,AQP3,AQP7,NOL6"
TCGA.AA.A00N.01A	9	33442004	33524447	24	-0.0174	NEUTRAL	NA	3	"ANKRD18B,AQP3,NOL6"
TCGA.AG.3909.01A	9	33442004	33543120	23	-0.1106	NEUTRAL	NA	3	"ANKRD18B,AQP3,NOL6"
TCGA.AA.A01F.01A	9	33462630	33471973	16	0.1054	NEUTRAL	NA	1	NOL6
TCGA.AG.3906.01A	9	33462630	33528683	18	-0.2896	NEUTRAL	NA	2	"ANKRD18B,NOL6"
TCGA.AG.4009.01A	9	33462630	33543120	20	0.2786	NEUTRAL	NA	2	"ANKRD18B,NOL6"
TCGA.AA.A01Q.01A	9	33465185	34405815	89	0.2734	NEUTRAL	NA	12	"ANKRD18B,C9orf24,DCAF12,FAM219A,KIAA1161,KIF24,NOL6,NUDT2,PRSS3,UBAP1,UBAP2,UBE2R2"
TCGA.AA.3982	9	33467613	33633837	37	0.1593	NEUTRAL	NA	2	"ANKRD18B,NOL6"
TCGA.AG.A015.01A	9	33469450	139324107	4864	-0.1295	NEUTRAL	NA	572	Too-Many
TCGA.AA.A01F.01A	9	33473712	130925732	3411	-0.3114	NEUTRAL	NA	445	Too-Many
TCGA.AG.3611.01A	9	33528683	33637978	5	-0.1205	NEUTRAL	NA	1	ANKRD18B
TCGA.AG.3906.01A	9	33528961	33922814	21	0.1326	NEUTRAL	NA	4	"ANKRD18B,PRSS3,UBAP2,UBE2R2"
TCGA.AA.A00N.01A	9	33547919	33794734	17	-0.111	NEUTRAL	NA	2	"ANKRD18B,PRSS3"
TCGA.AG.4009.01A	9	33558025	33817748	12	-0.1403	NEUTRAL	NA	3	"ANKRD18B,PRSS3,UBE2R2"
TCGA.AG.A01L.01A	9	33566235	34650308	130	-0.0255	NEUTRAL	NA	19	"ANKRD18B,ARID3C,C9orf24,CNTFR,DCAF12,DCTN3,DNAI1,ENHO,FAM219A,GALT,KIAA1161,KIF24,NUDT2,PRSS3,RPP25L,SIGMAR1,UBAP1,UBAP2,UBE2R2"
TCGA.A6.3808.01A	9	33617738	39085679	620	0.0626	NEUTRAL	NA	78	"ALDH1B1,ANKRD18A,ARHGEF39,ARID3C,C9orf131,C9orf24,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CLTA,CNTFR,CNTNAP3,CREB3,DCAF10,DCAF12,DCTN3,DNAI1,DNAJB5,ENHO,EXOSC3,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,FBXO10,FRMPD1,GALT,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,IL11RA,KIAA1045,KIAA1161,KIF24,MELK,MSMP,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,POLR1E,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SHB,SIGMAR1,SIT1,SLC25A51,SPAG8,STOML2,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,UBAP1,UBAP2,UBE2R2,UNC13B,VCP,ZBTB5,ZCCHC7"
TCGA.AA.3850	9	33628191	33651863	13	-0.21525	NEUTRAL	NA	0	None
TCGA.AA.3982	9	33634590	33706840	32	-0.2927	NEUTRAL	NA	0	None
TCGA.AA.3850	9	33661415	33685853	8	0.07325	NEUTRAL	NA	0	None
TCGA.AA.3941	9	33705619	34736930	227	0.0859	NEUTRAL	NA	23	"ARID3C,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCAF12,DCTN3,DNAI1,ENHO,FAM205A,FAM219A,GALT,IL11RA,KIAA1161,KIF24,NUDT2,PRSS3,RPP25L,SIGMAR1,UBAP1,UBAP2,UBE2R2"
TCGA.AA.3850	9	33705619	34781426	237	0.35525	NEUTRAL	NA	23	"ARID3C,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCAF12,DCTN3,DNAI1,ENHO,FAM205A,FAM219A,GALT,IL11RA,KIAA1161,KIF24,NUDT2,PRSS3,RPP25L,SIGMAR1,UBAP1,UBAP2,UBE2R2"
TCGA.AA.3982	9	33708792	34788845	234	0.2993	NEUTRAL	NA	23	"ARID3C,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCAF12,DCTN3,DNAI1,ENHO,FAM205A,FAM219A,GALT,IL11RA,KIAA1161,KIF24,NUDT2,PRSS3,RPP25L,SIGMAR1,UBAP1,UBAP2,UBE2R2"
TCGA.AA.3862.01A	9	33794734	38610223	602	0.0517	NEUTRAL	NA	77	"ALDH1B1,ANKRD18A,ARHGEF39,ARID3C,C9orf131,C9orf24,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CLTA,CNTFR,CREB3,DCAF10,DCAF12,DCTN3,DNAI1,DNAJB5,ENHO,EXOSC3,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,FBXO10,FRMPD1,GALT,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,IL11RA,KIAA1045,KIAA1161,KIF24,MELK,MSMP,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,POLR1E,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SHB,SIGMAR1,SIT1,SLC25A51,SPAG8,STOML2,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,UBAP1,UBAP2,UBE2R2,UNC13B,VCP,ZBTB5,ZCCHC7"
TCGA.AA.A00N.01A	9	33795494	33916984	10	0.2958	NEUTRAL	NA	2	"PRSS3,UBE2R2"
TCGA.AA.3861.01A	9	33817748	38575436	583	-0.1205	NEUTRAL	NA	76	"ALDH1B1,ANKRD18A,ARHGEF39,ARID3C,C9orf131,C9orf24,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CLTA,CNTFR,CREB3,DCAF10,DCAF12,DCTN3,DNAI1,DNAJB5,ENHO,EXOSC3,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,FBXO10,FRMPD1,GALT,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,IL11RA,KIAA1045,KIAA1161,KIF24,MELK,MSMP,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,POLR1E,RECK,RGP1,RNF38,RPP25L,RUSC2,SHB,SIGMAR1,SIT1,SLC25A51,SPAG8,STOML2,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,UBAP1,UBAP2,UBE2R2,UNC13B,VCP,ZBTB5,ZCCHC7"
TCGA.AG.A01W.01A	9	33876868	33907779	9	-0.0131	NEUTRAL	NA	1	UBE2R2
TCGA.AG.4009.01A	9	33886861	34372568	60	0.2349	NEUTRAL	NA	7	"DCAF12,KIAA1161,KIF24,NUDT2,UBAP1,UBAP2,UBE2R2"
TCGA.AA.A010.01A	9	33900125	33911915	2	0.2412	NEUTRAL	NA	1	UBE2R2
TCGA.AG.A01W.01A	9	33917746	33931648	8	0.2156	NEUTRAL	NA	2	"UBAP2,UBE2R2"
TCGA.AG.3906.01A	9	33923762	33963700	16	-0.2814	NEUTRAL	NA	1	UBAP2
TCGA.AA.3710	9	33927879	35125946	285	-0.4671	NEUTRAL	NA	29	"ARID3C,C9orf131,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCAF12,DCTN3,DNAI1,DNAJB5,ENHO,FAM205A,FAM214B,FAM219A,FANCG,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,NUDT2,PIGO,RPP25L,SIGMAR1,STOML2,UBAP1,UBAP2,VCP"
TCGA.AA.3532	9	33932337	141071474	25331	-0.0484	NEUTRAL	NA	631	Too-Many
TCGA.AA.A00N.01A	9	33935700	34296973	43	0.3166	NEUTRAL	NA	4	"DCAF12,KIF24,UBAP1,UBAP2"
TCGA.AA.A010.01A	9	33960784	34098301	14	0.2951	NEUTRAL	NA	2	"DCAF12,UBAP2"
TCGA.AG.3906.01A	9	33971631	33998727	6	0.0353	NEUTRAL	NA	1	UBAP2
TCGA.AA.A01K.01A	9	33986708	35825190	337	-0.4055	NEUTRAL	NA	48	"ARHGEF39,ARID3C,C9orf131,C9orf24,CA9,CCDC107,CCL19,CCL21,CCL27,CD72,CNTFR,CREB3,DCAF12,DCTN3,DNAI1,DNAJB5,ENHO,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,GALT,GBA2,HINT2,IL11RA,KIAA1045,KIAA1161,KIF24,MSMP,NPR2,NUDT2,PIGO,RGP1,RPP25L,RUSC2,SIGMAR1,SIT1,SPAG8,STOML2,TESK1,TLN1,TPM2,UBAP1,UBAP2,UNC13B,VCP"
TCGA.AG.A01W.01A	9	33997025	34168964	12	-0.0627	NEUTRAL	NA	2	"DCAF12,UBAP2"
TCGA.AG.3611.01A	9	34098301	99580196	1618	0.1648	NEUTRAL	NA	218	Too-Many
TCGA.A6.3810.01A	9	34126291	115038072	2992	-0.2226	NEUTRAL	NA	309	Too-Many
TCGA.AG.3906.01A	9	34220831	35079092	135	0.0863	NEUTRAL	NA	24	"ARID3C,C9orf131,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCTN3,DNAI1,DNAJB5,ENHO,FAM205A,FAM219A,FANCG,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,NUDT2,RPP25L,SIGMAR1,UBAP1,VCP"
TCGA.CK.5914.01A	9	34271758	35060756	118	-0.1839	NEUTRAL	NA	22	"ARID3C,C9orf131,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCTN3,DNAI1,DNAJB5,ENHO,FAM205A,FAM219A,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,NUDT2,RPP25L,SIGMAR1,VCP"
TCGA.AG.A00C.01A	9	34306210	35107402	139	0.3378	NEUTRAL	NA	26	"ARID3C,C9orf131,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCTN3,DNAI1,DNAJB5,ENHO,FAM205A,FAM214B,FAM219A,FANCG,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,NUDT2,PIGO,RPP25L,SIGMAR1,STOML2,VCP"
TCGA.AG.4009.01A	9	34379027	34458938	13	-0.2874	NEUTRAL	NA	3	"C9orf24,DNAI1,FAM219A"
TCGA.AA.A010.01A	9	34381306	34458133	11	-1.00E-04	NEUTRAL	NA	2	"C9orf24,FAM219A"
TCGA.AG.4009.01A	9	34483386	34501056	11	0.2051	NEUTRAL	NA	1	DNAI1
TCGA.AG.4009.01A	9	34506588	34650308	33	-0.3448	NEUTRAL	NA	8	"ARID3C,CNTFR,DCTN3,DNAI1,ENHO,GALT,RPP25L,SIGMAR1"
TCGA.AG.A025.01A	9	34613725	37783874	429	-0.3804	NEUTRAL	NA	57	"ARHGEF39,ARID3C,C9orf131,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CLTA,CREB3,DCTN3,DNAJB5,EXOSC3,FAM166B,FAM205A,FAM214B,FAM221B,FANCG,FBXO10,FRMPD1,GALT,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IL11RA,KIAA1045,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,PIGO,POLR1E,RECK,RGP1,RNF38,RUSC2,SIGMAR1,SIT1,SPAG8,STOML2,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,UNC13B,VCP,ZBTB5,ZCCHC7"
TCGA.AA.A010.01A	9	34623402	34838298	37	-0.1738	NEUTRAL	NA	8	"ARID3C,CCL19,CCL21,CCL27,FAM205A,GALT,IL11RA,SIGMAR1"
TCGA.AG.4009.01A	9	34655173	34691011	13	0.3185	NEUTRAL	NA	3	"CCL19,CCL27,IL11RA"
TCGA.AG.A01L.01A	9	34660223	35099985	59	-0.1327	NEUTRAL	NA	12	"C9orf131,CCL19,CCL21,CCL27,DNAJB5,FAM205A,FANCG,IL11RA,KIAA1045,PIGO,STOML2,VCP"
TCGA.AA.A01Q.01A	9	34689730	35057067	14	0.2266	NEUTRAL	NA	7	"C9orf131,CCL19,CCL21,DNAJB5,FAM205A,KIAA1045,VCP"
TCGA.AG.3909.01A	9	34689730	35059518	25	-0.1709	NEUTRAL	NA	7	"C9orf131,CCL19,CCL21,DNAJB5,FAM205A,KIAA1045,VCP"
TCGA.AG.4009.01A	9	34709306	35094165	49	-0.2054	NEUTRAL	NA	8	"C9orf131,CCL21,DNAJB5,FAM205A,FANCG,KIAA1045,PIGO,VCP"
TCGA.AY.5543	9	34730014	141071474	24961	0.0088	NEUTRAL	NA	610	Too-Many
TCGA.AA.3941	9	34737114	34964698	57	-0.4732	NEUTRAL	NA	1	KIAA1045
TCGA.AA.3850	9	34788845	34894848	27	-0.34635	NEUTRAL	NA	0	None
TCGA.AA.3982	9	34790531	34842544	17	-0.3751	NEUTRAL	NA	0	None
TCGA.AA.3982	9	34857871	35364352	119	0.1551	NEUTRAL	NA	9	"C9orf131,DNAJB5,FAM214B,FANCG,KIAA1045,PIGO,STOML2,UNC13B,VCP"
TCGA.AA.3850	9	34895597	35425168	117	0.19765	NEUTRAL	NA	9	"C9orf131,DNAJB5,FAM214B,FANCG,KIAA1045,PIGO,STOML2,UNC13B,VCP"
TCGA.AA.3941	9	34967221	35414844	94	-0.0676	NEUTRAL	NA	9	"C9orf131,DNAJB5,FAM214B,FANCG,KIAA1045,PIGO,STOML2,UNC13B,VCP"
TCGA.AA.A010.01A	9	34990576	35079393	32	-0.0088	NEUTRAL	NA	4	"C9orf131,DNAJB5,FANCG,VCP"
TCGA.AA.A01I.01A	9	35079393	35102972	17	-0.3827	NEUTRAL	NA	3	"FANCG,PIGO,STOML2"
TCGA.AA.A010.01A	9	35089038	35106763	21	-0.4513	NEUTRAL	NA	3	"FAM214B,PIGO,STOML2"
TCGA.AG.A01L.01A	9	35100544	35377417	24	0.168	NEUTRAL	NA	3	"FAM214B,STOML2,UNC13B"
TCGA.AA.A010.01A	9	35107402	35398840	34	0.3045	NEUTRAL	NA	2	"FAM214B,UNC13B"
TCGA.AA.A01Q.01A	9	35107402	35605585	48	0.1791	NEUTRAL	NA	5	"FAM166B,FAM214B,RUSC2,TESK1,UNC13B"
TCGA.AA.3710	9	35135238	141071474	25061	0.0043	NEUTRAL	NA	602	Too-Many
TCGA.AG.4009.01A	9	35227925	35243268	5	-0.0363	NEUTRAL	NA	1	UNC13B
TCGA.AG.3906.01A	9	35227925	35563695	48	-0.1715	NEUTRAL	NA	3	"FAM166B,RUSC2,UNC13B"
TCGA.AG.A00C.01A	9	35227925	35605585	49	-0.1747	NEUTRAL	NA	4	"FAM166B,RUSC2,TESK1,UNC13B"
TCGA.AA.A01I.01A	9	35227925	37498036	288	-0.2426	NEUTRAL	NA	35	"ARHGEF39,CA9,CCDC107,CCIN,CD72,CLTA,CREB3,FAM166B,FAM221B,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,POLR1E,RECK,RGP1,RNF38,RUSC2,SIT1,SPAG8,TESK1,TLN1,TMEM8B,TPM2,UNC13B,ZBTB5,ZCCHC7"
TCGA.AG.4009.01A	9	35258962	35563695	43	0.2838	NEUTRAL	NA	3	"FAM166B,RUSC2,UNC13B"
TCGA.AA.A00D.01A	9	35313845	35608829	43	-0.194	NEUTRAL	NA	4	"FAM166B,RUSC2,TESK1,UNC13B"
TCGA.AA.3982	9	35369421	35520926	25	-0.2185	NEUTRAL	NA	2	"RUSC2,UNC13B"
TCGA.AG.A01L.01A	9	35378270	35744560	121	-0.1454	NEUTRAL	NA	13	"ARHGEF39,CA9,CCDC107,CD72,CREB3,FAM166B,GBA2,RUSC2,SIT1,TESK1,TLN1,TPM2,UNC13B"
TCGA.AA.3941	9	35466063	35520926	14	-0.2575	NEUTRAL	NA	1	RUSC2
TCGA.AA.3850	9	35466063	37116492	527	0.33585	NEUTRAL	NA	30	"ARHGEF39,CA9,CCDC107,CCIN,CD72,CLTA,CREB3,FAM166B,FAM221B,GBA2,GLIPR2,GNE,HINT2,HRCT1,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,RECK,RGP1,RNF38,RUSC2,SIT1,SPAG8,TESK1,TLN1,TMEM8B,TPM2"
TCGA.AA.3870	9	35466063	37312953	555	0.0992	NEUTRAL	NA	31	"ARHGEF39,CA9,CCDC107,CCIN,CD72,CLTA,CREB3,FAM166B,FAM221B,GBA2,GLIPR2,GNE,HINT2,HRCT1,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,RECK,RGP1,RNF38,RUSC2,SIT1,SPAG8,TESK1,TLN1,TMEM8B,TPM2,ZCCHC7"
TCGA.AA.3982	9	35526069	36661527	289	0.3274	NEUTRAL	NA	29	"ARHGEF39,CA9,CCDC107,CCIN,CD72,CLTA,CREB3,FAM166B,FAM221B,GBA2,GLIPR2,GNE,HINT2,HRCT1,MELK,MSMP,NPR2,OR13J1,OR2S2,RECK,RGP1,RNF38,RUSC2,SIT1,SPAG8,TESK1,TLN1,TMEM8B,TPM2"
TCGA.AA.3941	9	35526069	72460607	1716	0.3089	NEUTRAL	NA	75	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,APBA1,ARHGEF39,C9orf135,CA9,CBWD3,CBWD5,CBWD6,CCDC107,CCIN,CD72,CLTA,CNTNAP3,CNTNAP3B,CREB3,DCAF10,EXOSC3,FAM122A,FAM166B,FAM189A2,FAM221B,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,FXN,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,PGM5,PIP5K1B,POLR1E,PRKACG,PTAR1,RECK,RGP1,RNF38,RUSC2,SHB,SIT1,SLC25A51,SPAG8,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TESK1,TJP2,TLN1,TMEM252,TMEM8B,TOMM5,TPM2,TRMT10B,ZBTB5,ZCCHC7,ZNF658"
TCGA.AG.A023.01A	9	35547262	35819838	132	0.1606	NEUTRAL	NA	18	"ARHGEF39,CA9,CCDC107,CD72,CREB3,FAM166B,FAM221B,GBA2,HINT2,MSMP,NPR2,RGP1,RUSC2,SIT1,SPAG8,TESK1,TLN1,TPM2"
TCGA.CK.5914.01A	9	35555929	35719999	77	-0.1412	NEUTRAL	NA	10	"ARHGEF39,CA9,CCDC107,CD72,FAM166B,RUSC2,SIT1,TESK1,TLN1,TPM2"
TCGA.D5.6534	9	35578000	38771830	1077	0.337	NEUTRAL	NA	43	"ALDH1B1,ANKRD18A,ARHGEF39,CA9,CCDC107,CCIN,CD72,CLTA,CREB3,DCAF10,EXOSC3,FAM221B,FBXO10,FRMPD1,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,POLR1E,RECK,RGP1,RNF38,SHB,SIT1,SLC25A51,SPAG8,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,ZBTB5,ZCCHC7"
TCGA.AG.A01W.01A	9	35598843	35734268	84	0.2722	NEUTRAL	NA	9	"ARHGEF39,CA9,CCDC107,CD72,CREB3,SIT1,TESK1,TLN1,TPM2"
TCGA.G4.6303	9	35599921	114140481	16597	-0.4069	NEUTRAL	NA	269	Too-Many
TCGA.AA.A01Q.01A	9	35606783	35719999	66	-0.3934	NEUTRAL	NA	8	"ARHGEF39,CA9,CCDC107,CD72,SIT1,TESK1,TLN1,TPM2"
TCGA.AA.A00D.01A	9	35610574	35677720	22	0.1347	NEUTRAL	NA	5	"ARHGEF39,CA9,CCDC107,CD72,SIT1"
TCGA.AF.3914.01A	9	35615968	35679144	20	-0.454	NEUTRAL	NA	5	"ARHGEF39,CA9,CCDC107,CD72,SIT1"
TCGA.AG.3891.01A	9	35615968	35825570	117	0.1751	NEUTRAL	NA	15	"ARHGEF39,CA9,CCDC107,CD72,CREB3,FAM221B,GBA2,HINT2,MSMP,NPR2,RGP1,SIT1,SPAG8,TLN1,TPM2"
TCGA.AG.4009.01A	9	35616549	35725524	61	-0.1927	NEUTRAL	NA	7	"ARHGEF39,CA9,CCDC107,CD72,SIT1,TLN1,TPM2"
TCGA.AA.A010.01A	9	35649808	35707680	36	0.0252	NEUTRAL	NA	6	"ARHGEF39,CA9,CCDC107,SIT1,TLN1,TPM2"
TCGA.AG.3906.01A	9	35649808	35712781	38	0.0478	NEUTRAL	NA	6	"ARHGEF39,CA9,CCDC107,SIT1,TLN1,TPM2"
TCGA.AA.A00D.01A	9	35679144	35719999	37	-0.2134	NEUTRAL	NA	3	"CA9,TLN1,TPM2"
TCGA.AF.3914.01A	9	35679810	35714562	29	0.0512	NEUTRAL	NA	3	"CA9,TLN1,TPM2"
TCGA.AG.A00C.01A	9	35683111	35719475	32	0.0699	NEUTRAL	NA	2	"TLN1,TPM2"
TCGA.AA.A01S	9	35696624	141071474	24942	0.00385	NEUTRAL	NA	592	Too-Many
TCGA.AA.A00Q.01A	9	35700259	36342285	124	-0.0122	NEUTRAL	NA	19	"CCIN,CLTA,CREB3,FAM221B,GBA2,GLIPR2,GNE,HINT2,HRCT1,MSMP,NPR2,OR13J1,OR2S2,RECK,RGP1,RNF38,SPAG8,TLN1,TMEM8B"
TCGA.AA.A00N.01A	9	35703515	35719999	22	-0.1623	NEUTRAL	NA	1	TLN1
TCGA.AA.A010.01A	9	35708286	35719999	17	-0.4725	NEUTRAL	NA	1	TLN1
TCGA.AF.3914.01A	9	35715025	35725524	17	-0.4628	NEUTRAL	NA	1	TLN1
TCGA.AA.A00D.01A	9	35720367	71951113	280	0.1142	NEUTRAL	NA	63	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CCIN,CLTA,CNTNAP3,CNTNAP3B,CREB3,DCAF10,EXOSC3,FAM122A,FAM189A2,FAM221B,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,FXN,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,PGM5,PIP5K1B,POLR1E,PRKACG,RECK,RGP1,RNF38,SHB,SLC25A51,SPAG8,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TJP2,TLN1,TMEM252,TMEM8B,TOMM5,TRMT10B,ZBTB5,ZCCHC7,ZNF658"
TCGA.AG.A02G.01A	9	35748301	141015884	4783	-0.4105	NEUTRAL	NA	590	Too-Many
TCGA.AA.A01Q.01A	9	35749692	35801883	12	-0.3757	NEUTRAL	NA	3	"MSMP,NPR2,RGP1"
TCGA.AG.A00C.01A	9	35751933	35753056	3	0.0243	NEUTRAL	NA	2	"MSMP,RGP1"
TCGA.AG.3906.01A	9	35751933	35753965	5	-0.1142	NEUTRAL	NA	2	"MSMP,RGP1"
TCGA.AG.A01L.01A	9	35752646	90499436	1052	-0.0807	NEUTRAL	NA	119	Too-Many
TCGA.AF.3914.01A	9	35799563	37425869	131	-0.3131	NEUTRAL	NA	18	"CCIN,CLTA,FAM221B,GLIPR2,GNE,GRHPR,HINT2,HRCT1,MELK,NPR2,OR13J1,OR2S2,PAX5,RECK,RNF38,SPAG8,TMEM8B,ZCCHC7"
TCGA.AA.A01K.01A	9	35825570	100079300	1494	-0.0109	NEUTRAL	NA	175	Too-Many
TCGA.CK.5914.01A	9	35829815	35853101	11	-0.1064	NEUTRAL	NA	1	TMEM8B
TCGA.AA.A01Q.01A	9	35834450	36118767	28	0.2572	NEUTRAL	NA	5	"HRCT1,OR13J1,OR2S2,RECK,TMEM8B"
TCGA.AG.3909.01A	9	35834957	35846833	7	-0.2002	NEUTRAL	NA	1	TMEM8B
TCGA.AG.3891.01A	9	35841082	36058805	14	-0.1263	NEUTRAL	NA	5	"HRCT1,OR13J1,OR2S2,RECK,TMEM8B"
TCGA.AG.3906.01A	9	35841082	71606008	263	-0.0194	NEUTRAL	NA	50	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CCIN,CLTA,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FAM122A,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,GLIPR2,GNE,GRHPR,HRCT1,IGFBPL1,MELK,OR13J1,OR2S2,PAX5,PGM5,PIP5K1B,POLR1E,RECK,RNF38,SHB,SLC25A51,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TMEM252,TMEM8B,TOMM5,TRMT10B,ZBTB5,ZCCHC7,ZNF658"
TCGA.AG.4009.01A	9	35842347	36058805	12	-0.368	NEUTRAL	NA	5	"HRCT1,OR13J1,OR2S2,RECK,TMEM8B"
TCGA.AG.3909.01A	9	35852814	36122784	26	0.2896	NEUTRAL	NA	5	"HRCT1,OR13J1,OR2S2,RECK,TMEM8B"
TCGA.AA.A00N.01A	9	35853101	37440535	109	-0.0411	NEUTRAL	NA	15	"CCIN,CLTA,GLIPR2,GNE,GRHPR,HRCT1,MELK,OR13J1,OR2S2,PAX5,RECK,RNF38,TMEM8B,ZBTB5,ZCCHC7"
TCGA.AG.A023.01A	9	35853101	37498036	107	0.3564	NEUTRAL	NA	16	"CCIN,CLTA,GLIPR2,GNE,GRHPR,HRCT1,MELK,OR13J1,OR2S2,PAX5,POLR1E,RECK,RNF38,TMEM8B,ZBTB5,ZCCHC7"
TCGA.AG.A00C.01A	9	35869438	71854816	272	0.0936	NEUTRAL	NA	52	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CCIN,CLTA,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FAM122A,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,FXN,GLIPR2,GNE,GRHPR,HRCT1,IGFBPL1,MELK,OR13J1,OR2S2,PAX5,PGM5,PIP5K1B,POLR1E,PRKACG,RECK,RNF38,SHB,SLC25A51,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TJP2,TMEM252,TOMM5,TRMT10B,ZBTB5,ZCCHC7,ZNF658"
TCGA.AA.A010.01A	9	36052203	36162317	24	-0.3591	NEUTRAL	NA	2	"GLIPR2,RECK"
TCGA.AG.4009.01A	9	36060038	36375894	51	0.074	NEUTRAL	NA	6	"CCIN,CLTA,GLIPR2,GNE,RECK,RNF38"
TCGA.AG.3891.01A	9	36060038	37777570	142	0.1747	NEUTRAL	NA	16	"CCIN,CLTA,FBXO10,FRMPD1,GLIPR2,GNE,GRHPR,MELK,PAX5,POLR1E,RECK,RNF38,TOMM5,TRMT10B,ZBTB5,ZCCHC7"
TCGA.CK.5914.01A	9	36100279	36148496	13	0.1616	NEUTRAL	NA	2	"GLIPR2,RECK"
TCGA.AA.A01Q.01A	9	36120599	36210539	13	-0.258	NEUTRAL	NA	4	"CCIN,CLTA,GLIPR2,RECK"
TCGA.CK.5914.01A	9	36204016	36276820	16	0.2506	NEUTRAL	NA	2	"CLTA,GNE"
TCGA.AG.3909.01A	9	36204016	36375894	26	0.2653	NEUTRAL	NA	3	"CLTA,GNE,RNF38"
TCGA.AA.A01Q.01A	9	36211550	36390427	23	0.3608	NEUTRAL	NA	3	"CLTA,GNE,RNF38"
TCGA.AA.A010.01A	9	36352690	36597152	14	-0.2664	NEUTRAL	NA	2	"MELK,RNF38"
TCGA.AG.3909.01A	9	36390427	36630233	10	-0.429	NEUTRAL	NA	2	"MELK,RNF38"
TCGA.AG.4009.01A	9	36390427	36633052	11	-0.3347	NEUTRAL	NA	2	"MELK,RNF38"
TCGA.AA.A01Q.01A	9	36400002	36630233	9	-0.0988	NEUTRAL	NA	2	"MELK,RNF38"
TCGA.AG.3883	9	36548241	74258823	2157	-0.289	NEUTRAL	NA	51	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,APBA1,C9orf135,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FAM122A,FAM189A2,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,FXN,GRHPR,IGFBPL1,KLF9,MAMDC2,MELK,PAX5,PGM5,PIP5K1B,POLR1E,PRKACG,PTAR1,SHB,SLC25A51,SMC5,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TJP2,TMEM252,TOMM5,TRMT10B,TRPM3,ZBTB5,ZCCHC7,ZNF658"
TCGA.AA.A01Q.01A	9	36633052	36966519	14	0.2635	NEUTRAL	NA	2	"MELK,PAX5"
TCGA.AG.4009.01A	9	36642981	36923319	12	0.2621	NEUTRAL	NA	2	"MELK,PAX5"
TCGA.AA.A010.01A	9	36651696	36674814	6	0.0293	NEUTRAL	NA	1	MELK
TCGA.AA.3982	9	36694475	36842683	73	0.1676	NEUTRAL	NA	1	PAX5
TCGA.DY.A1DG	9	36738640	141011580	24674	-0.0084	NEUTRAL	NA	572	Too-Many
TCGA.AA.A00Q.01A	9	36840514	72882774	197	0.1659	NEUTRAL	NA	48	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,APBA1,C9orf135,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FAM122A,FAM189A2,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,FXN,GRHPR,IGFBPL1,MAMDC2,PAX5,PGM5,PIP5K1B,POLR1E,PRKACG,PTAR1,SHB,SLC25A51,SMC5,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TJP2,TMEM252,TOMM5,TRMT10B,ZBTB5,ZCCHC7,ZNF658"
TCGA.A6.6653	9	36957650	37031875	48	-0.3541	NEUTRAL	NA	1	PAX5
TCGA.AG.4009.01A	9	36966519	37305501	9	-0.2711	NEUTRAL	NA	2	"PAX5,ZCCHC7"
TCGA.AA.3982	9	37010447	37064495	28	0.2174	NEUTRAL	NA	1	PAX5
TCGA.D5.6533	9	37024121	141071474	24425	-0.1245	NEUTRAL	NA	572	Too-Many
TCGA.AA.A010.01A	9	37033909	37356793	10	-0.0195	NEUTRAL	NA	2	"PAX5,ZCCHC7"
TCGA.A6.6653	9	37037975	68324146	617	0.0053	NEUTRAL	NA	27	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FBXO10,FOXD4L4,FRMPD1,GRHPR,IGFBPL1,POLR1E,SHB,SLC25A51,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TOMM5,TRMT10B,ZBTB5,ZCCHC7,ZNF658"
TCGA.AA.3543	9	37037975	103356111	11710	0.0193	NEUTRAL	NA	191	Too-Many
TCGA.AA.3877	9	37037975	141071474	24501	0.0138	NEUTRAL	NA	571	Too-Many
TCGA.AA.3982	9	37066616	37294433	37	-0.1889	NEUTRAL	NA	1	ZCCHC7
TCGA.AA.3850	9	37125910	37331604	30	-0.42605	NEUTRAL	NA	1	ZCCHC7
TCGA.AA.A01Q.01A	9	37126313	37424805	10	0.2707	NEUTRAL	NA	2	"GRHPR,ZCCHC7"
TCGA.AG.3909.01A	9	37302105	37440535	16	0.0948	NEUTRAL	NA	3	"GRHPR,ZBTB5,ZCCHC7"
TCGA.AG.4009.01A	9	37327713	38615564	87	0.0835	NEUTRAL	NA	15	"ALDH1B1,ANKRD18A,DCAF10,EXOSC3,FBXO10,FRMPD1,GRHPR,IGFBPL1,POLR1E,SHB,SLC25A51,TOMM5,TRMT10B,ZBTB5,ZCCHC7"
TCGA.AA.3850	9	37349070	37775466	161	0.33285	NEUTRAL	NA	8	"FBXO10,FRMPD1,GRHPR,POLR1E,TOMM5,TRMT10B,ZBTB5,ZCCHC7"
TCGA.AA.3811	9	37349070	38771830	551	0.252	NEUTRAL	NA	15	"ALDH1B1,ANKRD18A,DCAF10,EXOSC3,FBXO10,FRMPD1,GRHPR,IGFBPL1,POLR1E,SHB,SLC25A51,TOMM5,TRMT10B,ZBTB5,ZCCHC7"
TCGA.AA.3982	9	37349070	39089389	553	0.2545	NEUTRAL	NA	16	"ALDH1B1,ANKRD18A,CNTNAP3,DCAF10,EXOSC3,FBXO10,FRMPD1,GRHPR,IGFBPL1,POLR1E,SHB,SLC25A51,TOMM5,TRMT10B,ZBTB5,ZCCHC7"
TCGA.AA.3956	9	37349070	76300736	2477	0.0203	NEUTRAL	NA	58	"ABHD17B,ALDH1A1,ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,ANXA1,APBA1,C9orf135,C9orf57,C9orf85,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FAM122A,FAM189A2,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,FXN,GDA,GRHPR,IGFBPL1,KLF9,MAMDC2,PGM5,PIP5K1B,POLR1E,PRKACG,PTAR1,SHB,SLC25A51,SMC5,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TJP2,TMC1,TMEM2,TMEM252,TOMM5,TRMT10B,TRPM3,ZBTB5,ZCCHC7,ZFAND5,ZNF658"
TCGA.AA.3870	9	37351347	75715401	2312	0.0429	NEUTRAL	NA	57	"ABHD17B,ALDH1A1,ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,APBA1,C9orf135,C9orf57,C9orf85,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FAM122A,FAM189A2,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,FXN,GDA,GRHPR,IGFBPL1,KLF9,MAMDC2,PGM5,PIP5K1B,POLR1E,PRKACG,PTAR1,SHB,SLC25A51,SMC5,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TJP2,TMC1,TMEM2,TMEM252,TOMM5,TRMT10B,TRPM3,ZBTB5,ZCCHC7,ZFAND5,ZNF658"
TCGA.AA.3989	9	37351347	106682228	12897	0.0322	NEUTRAL	NA	201	Too-Many
TCGA.AA.3972	9	37351347	141071474	24444	-0.2679	NEUTRAL	NA	571	Too-Many
TCGA.DY.A1DF	9	37376121	70987820	562	0.3042	NEUTRAL	NA	34	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FBXO10,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FRMPD1,GRHPR,IGFBPL1,PGM5,POLR1E,SHB,SLC25A51,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TOMM5,TRMT10B,ZBTB5,ZNF658"
TCGA.AA.A01Q.01A	9	37425869	37501661	19	-0.3449	NEUTRAL	NA	3	"GRHPR,POLR1E,ZBTB5"
TCGA.AF.3914.01A	9	37426483	139116640	4676	-0.0096	NEUTRAL	NA	500	Too-Many
TCGA.AG.A01W.01A	9	37479254	96373515	1356	0.1047	NEUTRAL	NA	136	Too-Many
TCGA.AA.A01Q.01A	9	37502988	37861130	33	0.1632	NEUTRAL	NA	7	"DCAF10,EXOSC3,FBXO10,FRMPD1,POLR1E,TOMM5,TRMT10B"
TCGA.AA.A01I.01A	9	37512506	101788130	1582	-0.1408	NEUTRAL	NA	175	Too-Many
TCGA.AG.A023.01A	9	37512506	141015884	4444	0.053	NEUTRAL	NA	567	Too-Many
TCGA.AG.4021	9	37663330	141013720	24292	0	NEUTRAL	NA	565	Too-Many
TCGA.CK.5914.01A	9	37733423	37842049	21	-0.3626	NEUTRAL	NA	4	"DCAF10,EXOSC3,FRMPD1,TRMT10B"
TCGA.AG.3891.01A	9	37780625	71555515	110	-0.1967	NEUTRAL	NA	30	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FAM122A,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,IGFBPL1,PGM5,PIP5K1B,SHB,SLC25A51,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TMEM252,ZNF658"
TCGA.AG.3909.01A	9	37784727	37919769	11	-0.4808	NEUTRAL	NA	4	"DCAF10,EXOSC3,SHB,SLC25A51"
TCGA.AA.A00N.01A	9	37784727	39086646	43	-0.4516	NEUTRAL	NA	8	"ALDH1B1,ANKRD18A,CNTNAP3,DCAF10,EXOSC3,IGFBPL1,SHB,SLC25A51"
TCGA.AG.A025.01A	9	37784727	132576281	3683	-0.065	NEUTRAL	NA	412	Too-Many
TCGA.AA.3850	9	37788883	39182451	389	0.34275	NEUTRAL	NA	7	"ALDH1B1,ANKRD18A,CNTNAP3,DCAF10,IGFBPL1,SHB,SLC25A51"
TCGA.AA.A01Q.01A	9	37887602	38615564	9	-0.3517	NEUTRAL	NA	5	"ALDH1B1,ANKRD18A,IGFBPL1,SHB,SLC25A51"
TCGA.AU.3779	9	37936502	39184064	361	0.1633	NEUTRAL	NA	5	"ALDH1B1,ANKRD18A,CNTNAP3,IGFBPL1,SHB"
TCGA.AA.3855	9	38079515	141071474	24162	0.0307	NEUTRAL	NA	559	Too-Many
TCGA.CK.4950	9	38505381	141071474	23773	-0.0279	NEUTRAL	NA	557	Too-Many
TCGA.AA.A010.01A	9	38527045	38577042	5	0.2033	NEUTRAL	NA	1	ANKRD18A
TCGA.AA.A010.01A	9	38607360	71555515	99	0.1568	NEUTRAL	NA	24	"ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FAM122A,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5,PIP5K1B,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TMEM252,ZNF658"
TCGA.AA.3815.01A	9	38610223	70993108	60	-0.4211	NEUTRAL	NA	21	"ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,ZNF658"
TCGA.AA.A01Q.01A	9	38620030	71606008	47	0.251	NEUTRAL	NA	24	"ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FAM122A,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5,PIP5K1B,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TMEM252,ZNF658"
TCGA.AZ.6607	9	38638229	107026811	12537	-0.206	NEUTRAL	NA	187	Too-Many
TCGA.AF.6136	9	38668791	141071474	23935	-0.153	NEUTRAL	NA	556	Too-Many
TCGA.A6.6142	9	38704679	141071474	23937	-0.3305	NEUTRAL	NA	556	Too-Many
TCGA.NH.A8F8	9	38994129	44830238	7	-0.4102	NEUTRAL	NA	11	"ANKRD20A2,ANKRD20A3,CNTNAP3,CNTNAP3B,FOXD4L4,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,ZNF658"
TCGA.D5.6534	9	38994129	98434165	9675	-0.0059	NEUTRAL	NA	134	Too-Many
TCGA.AA.3811	9	38994129	104385872	11483	-0.0746	NEUTRAL	NA	185	Too-Many
TCGA.AG.4015	9	38994129	137943924	23258	-0.0105	NEUTRAL	NA	468	Too-Many
TCGA.AF.2690	9	38994129	141071474	23898	0.0052	NEUTRAL	NA	556	Too-Many
TCGA.CM.5344	9	38994129	141071474	23879	-0.2357	NEUTRAL	NA	556	Too-Many
TCGA.G4.6626	9	38994129	141071474	23906	-0.0334	NEUTRAL	NA	556	Too-Many
TCGA.CM.6163	9	39089389	141071474	23790	0.0633	NEUTRAL	NA	556	Too-Many
TCGA.AA.A00N.01A	9	39099868	43891512	40	0.1646	NEUTRAL	NA	11	"ANKRD20A2,ANKRD20A3,CNTNAP3,CNTNAP3B,FOXD4L4,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,ZNF658"
TCGA.AG.3909.01A	9	39099868	71628391	80	0.1876	NEUTRAL	NA	24	"ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FAM122A,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5,PIP5K1B,PRKACG,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TMEM252,ZNF658"
TCGA.AG.4009.01A	9	39171328	71687516	75	-0.0153	NEUTRAL	NA	25	"ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FAM122A,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FXN,PGM5,PIP5K1B,PRKACG,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TMEM252,ZNF658"
TCGA.AA.3982	9	39182451	75740892	1761	-0.0463	NEUTRAL	NA	42	"ABHD17B,ALDH1A1,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,APBA1,C9orf135,C9orf57,C9orf85,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FAM122A,FAM189A2,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FXN,GDA,KLF9,MAMDC2,PGM5,PIP5K1B,PRKACG,PTAR1,SMC5,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TJP2,TMC1,TMEM2,TMEM252,TRPM3,ZFAND5,ZNF658"
TCGA.AA.3850	9	39184064	71522229	248	-0.04665	NEUTRAL	NA	23	"ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FAM122A,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5,PIP5K1B,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TMEM252,ZNF658"
TCGA.G4.6299	9	39184064	121507548	18552	-0.023	NEUTRAL	NA	274	Too-Many
TCGA.CK.4952.01A	9	40695643	44810042	24	0.0045	NEUTRAL	NA	9	"ANKRD20A2,ANKRD20A3,CNTNAP3B,FOXD4L4,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,ZNF658"
TCGA.F5.6811.01A	9	43789692	140229504	5578	-0.0871	NEUTRAL	NA	540	Too-Many
TCGA.AA.3939.01A	9	43915765	141109683	5405	-0.2286	NEUTRAL	NA	551	Too-Many
TCGA.EI.7004	9	44795318	126759735	20302	0.012	NEUTRAL	NA	310	Too-Many
TCGA.AD.6901	9	44795318	139823621	23686	0.0413	NEUTRAL	NA	504	Too-Many
TCGA.AA.3854	9	44795318	141071474	23909	0.1931	NEUTRAL	NA	549	Too-Many
TCGA.AU.3779	9	44795318	141071474	23880	-0.3449	NEUTRAL	NA	549	Too-Many
TCGA.AZ.6603	9	44795318	141071474	23842	-0.225	NEUTRAL	NA	549	Too-Many
TCGA.D5.5539	9	44795318	141071474	23867	-0.0583	NEUTRAL	NA	549	Too-Many
TCGA.F5.6702	9	44795318	141071474	23809	-0.2555	NEUTRAL	NA	549	Too-Many
TCGA.A6.6782	9	44827044	141071474	23809	0.007	NEUTRAL	NA	549	Too-Many
TCGA.AY.4071	9	44830238	141071474	23772	-0.3882	NEUTRAL	NA	549	Too-Many
TCGA.AG.3890	9	44866027	103771049	11227	0.1485	NEUTRAL	NA	169	Too-Many
TCGA.AA.3712	9	44866027	121028122	18339	-0.4019	NEUTRAL	NA	267	Too-Many
TCGA.AD.6965	9	44866027	141071474	23850	-0.0399	NEUTRAL	NA	549	Too-Many
TCGA.AZ.6601	9	44866027	141071474	23895	0	NEUTRAL	NA	549	Too-Many
TCGA.AA.A00N.01A	9	67968332	71007188	22	-0.0836	NEUTRAL	NA	11	"ANKRD20A1,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5"
TCGA.AF.6655	9	68298351	141071474	23851	0.301	NEUTRAL	NA	545	Too-Many
TCGA.AA.3489	9	69492990	98996533	9898	0.367	NEUTRAL	NA	122	Too-Many
TCGA.AG.3612	9	69824963	141071474	23727	-0.0334	NEUTRAL	NA	542	Too-Many
TCGA.AZ.4614	9	69827538	141011580	23599	-0.0917	NEUTRAL	NA	542	Too-Many
TCGA.CK.4952.01A	9	70108726	140229504	5572	-0.0756	NEUTRAL	NA	532	Too-Many
TCGA.AA.3967.01A	9	70871799	74587591	187	0.1696	NEUTRAL	NA	20	"ABHD17B,APBA1,C9orf135,C9orf85,CBWD3,FAM122A,FAM189A2,FOXD4L3,FXN,KLF9,MAMDC2,PGM5,PIP5K1B,PRKACG,PTAR1,SMC5,TJP2,TMEM2,TMEM252,TRPM3"
TCGA.AZ.4684.01A	9	70871799	74863124	216	0.1857	NEUTRAL	NA	22	"ABHD17B,APBA1,C9orf135,C9orf57,C9orf85,CBWD3,FAM122A,FAM189A2,FOXD4L3,FXN,GDA,KLF9,MAMDC2,PGM5,PIP5K1B,PRKACG,PTAR1,SMC5,TJP2,TMEM2,TMEM252,TRPM3"
TCGA.AA.3819	9	70987820	85451186	5198	-0.0015	NEUTRAL	NA	45	"ABHD17B,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf40,C9orf41,C9orf57,C9orf85,CEP78,FAM122A,FAM189A2,FOXB2,FXN,GCNT1,GDA,GNA14,GNAQ,KLF9,MAMDC2,NMRK1,OSTF1,PCSK5,PGM5,PIP5K1B,PRKACG,PRUNE2,PSAT1,PTAR1,RFK,RORB,SMC5,SPATA31D1,SPATA31D3,SPATA31D4,TJP2,TLE1,TLE4,TMC1,TMEM2,TMEM252,TRPM3,TRPM6,VPS13A,ZFAND5"
TCGA.A6.3809	9	70987820	141071474	21927	0.004	NEUTRAL	NA	537	Too-Many
TCGA.A6.6653	9	70987820	141071474	23885	-0.0029	NEUTRAL	NA	537	Too-Many
TCGA.AF.5654	9	70987820	141071474	23819	0.0052	NEUTRAL	NA	537	Too-Many
TCGA.AH.6897	9	70987820	141071474	23842	-0.0313	NEUTRAL	NA	537	Too-Many
TCGA.F4.6704	9	70987820	141071474	23843	-0.021	NEUTRAL	NA	537	Too-Many
TCGA.AA.3815.01A	9	70999272	130473491	3427	-4.00E-04	NEUTRAL	NA	329	Too-Many
TCGA.QG.A5YV	9	71013799	141071474	23691	0.0089	NEUTRAL	NA	537	Too-Many
TCGA.5M.AAT4	9	71019572	141071474	23879	-0.0332	NEUTRAL	NA	537	Too-Many
TCGA.A6.4105	9	71035451	141071474	23885	0.0105	NEUTRAL	NA	537	Too-Many
TCGA.AA.3862.01A	9	71079960	86518397	649	-0.204	NEUTRAL	NA	51	"ABHD17B,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf40,C9orf41,C9orf57,C9orf85,CEP78,FAM122A,FAM189A2,FOXB2,FRMD3,FXN,GCNT1,GDA,GKAP1,GNA14,GNAQ,IDNK,KIF27,KLF9,MAMDC2,NMRK1,OSTF1,PCSK5,PGM5,PIP5K1B,PRKACG,PRUNE2,PSAT1,PTAR1,RASEF,RFK,RORB,SMC5,SPATA31D1,SPATA31D3,SPATA31D4,TJP2,TLE1,TLE4,TMC1,TMEM2,TMEM252,TRPM3,TRPM6,UBQLN1,VPS13A,ZFAND5"
TCGA.AA.3861.01A	9	71079960	86523330	646	-0.2471	NEUTRAL	NA	51	"ABHD17B,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf40,C9orf41,C9orf57,C9orf85,CEP78,FAM122A,FAM189A2,FOXB2,FRMD3,FXN,GCNT1,GDA,GKAP1,GNA14,GNAQ,IDNK,KIF27,KLF9,MAMDC2,NMRK1,OSTF1,PCSK5,PGM5,PIP5K1B,PRKACG,PRUNE2,PSAT1,PTAR1,RASEF,RFK,RORB,SMC5,SPATA31D1,SPATA31D3,SPATA31D4,TJP2,TLE1,TLE4,TMC1,TMEM2,TMEM252,TRPM3,TRPM6,UBQLN1,VPS13A,ZFAND5"
TCGA.AG.3891.01A	9	71606008	71827394	9	0.3346	NEUTRAL	NA	4	"FXN,PIP5K1B,PRKACG,TJP2"
TCGA.CK.5914.01A	9	71606008	71951113	32	-0.2026	NEUTRAL	NA	5	"FAM189A2,FXN,PIP5K1B,PRKACG,TJP2"
TCGA.AA.A01Q.01A	9	71623273	71844037	16	-0.2828	NEUTRAL	NA	4	"FXN,PIP5K1B,PRKACG,TJP2"
TCGA.AG.3906.01A	9	71668008	75406815	186	0.0026	NEUTRAL	NA	17	"ABHD17B,APBA1,C9orf135,C9orf57,C9orf85,FAM189A2,FXN,GDA,KLF9,MAMDC2,PTAR1,SMC5,TJP2,TMC1,TMEM2,TRPM3,ZFAND5"
TCGA.AA.A010.01A	9	71679815	72090930	45	0.0793	NEUTRAL	NA	4	"APBA1,FAM189A2,FXN,TJP2"
TCGA.DM.A28F	9	71697964	136617705	22482	-0.0198	NEUTRAL	NA	437	Too-Many
TCGA.AA.3850	9	71798972	72114422	133	0.26535	NEUTRAL	NA	3	"APBA1,FAM189A2,TJP2"
TCGA.AG.3891.01A	9	71831208	90401615	762	-0.0938	NEUTRAL	NA	60	"ABHD17B,AGTPBP1,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf153,C9orf170,C9orf40,C9orf41,C9orf57,C9orf64,C9orf85,CEP78,CTSL,DAPK1,FAM189A2,FOXB2,FRMD3,GAS1,GCNT1,GDA,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,KLF9,MAMDC2,NAA35,NMRK1,NTRK2,OSTF1,PCSK5,PRUNE2,PSAT1,PTAR1,RASEF,RFK,RMI1,RORB,SLC28A3,SMC5,SPATA31D1,SPATA31D3,SPATA31D4,TJP2,TLE1,TLE4,TMC1,TMEM2,TRPM3,TRPM6,UBQLN1,VPS13A,ZCCHC6,ZFAND5"
TCGA.AA.A01Q.01A	9	71844951	90321049	639	0.1273	NEUTRAL	NA	59	"ABHD17B,AGTPBP1,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf153,C9orf170,C9orf40,C9orf41,C9orf57,C9orf64,C9orf85,CEP78,DAPK1,FAM189A2,FOXB2,FRMD3,GAS1,GCNT1,GDA,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,KLF9,MAMDC2,NAA35,NMRK1,NTRK2,OSTF1,PCSK5,PRUNE2,PSAT1,PTAR1,RASEF,RFK,RMI1,RORB,SLC28A3,SMC5,SPATA31D1,SPATA31D3,SPATA31D4,TJP2,TLE1,TLE4,TMC1,TMEM2,TRPM3,TRPM6,UBQLN1,VPS13A,ZCCHC6,ZFAND5"
TCGA.AG.4009.01A	9	71849328	74865602	157	0.113	NEUTRAL	NA	14	"ABHD17B,APBA1,C9orf135,C9orf57,C9orf85,FAM189A2,GDA,KLF9,MAMDC2,PTAR1,SMC5,TJP2,TMEM2,TRPM3"
TCGA.AG.A008.01A	9	71853567	74865602	153	0.1032	NEUTRAL	NA	14	"ABHD17B,APBA1,C9orf135,C9orf57,C9orf85,FAM189A2,GDA,KLF9,MAMDC2,PTAR1,SMC5,TJP2,TMEM2,TRPM3"
TCGA.AG.A00C.01A	9	71861565	72840612	51	-0.2559	NEUTRAL	NA	6	"APBA1,C9orf135,FAM189A2,MAMDC2,PTAR1,TJP2"
TCGA.AF.2687	9	71973434	141071474	23388	-0.1911	NEUTRAL	NA	530	Too-Many
TCGA.AA.A00D.01A	9	71986363	72785353	39	-0.2004	NEUTRAL	NA	5	"APBA1,C9orf135,FAM189A2,MAMDC2,PTAR1"
TCGA.AA.3844	9	71994521	74969075	1097	0.3467	NEUTRAL	NA	14	"ABHD17B,APBA1,C9orf135,C9orf57,C9orf85,FAM189A2,GDA,KLF9,MAMDC2,PTAR1,SMC5,TMEM2,TRPM3,ZFAND5"
TCGA.AA.3850	9	72114500	74272000	836	-0.25285	NEUTRAL	NA	7	"APBA1,C9orf135,KLF9,MAMDC2,PTAR1,SMC5,TRPM3"
TCGA.AA.A010.01A	9	72374715	75420248	149	0.089	NEUTRAL	NA	13	"ABHD17B,C9orf135,C9orf57,C9orf85,GDA,KLF9,MAMDC2,PTAR1,SMC5,TMC1,TMEM2,TRPM3,ZFAND5"
TCGA.AG.3726	9	72416912	72728387	158	-0.0416	NEUTRAL	NA	2	"C9orf135,MAMDC2"
TCGA.AA.3941	9	72464073	74247405	700	-0.1591	NEUTRAL	NA	5	"C9orf135,KLF9,MAMDC2,SMC5,TRPM3"
TCGA.DM.A288	9	72536235	73540865	383	-0.3624	NEUTRAL	NA	4	"KLF9,MAMDC2,SMC5,TRPM3"
TCGA.AA.A00D.01A	9	72833236	72873948	4	0.171	NEUTRAL	NA	2	"MAMDC2,SMC5"
TCGA.AG.A00C.01A	9	72840839	72901064	9	0.3039	NEUTRAL	NA	2	"MAMDC2,SMC5"
TCGA.AG.3909.01A	9	72879181	72897311	6	-0.4658	NEUTRAL	NA	1	SMC5
TCGA.AG.A00C.01A	9	72912884	72930314	5	-0.2149	NEUTRAL	NA	1	SMC5
TCGA.AA.A00D.01A	9	72912884	72967065	15	0.1503	NEUTRAL	NA	1	SMC5
TCGA.AG.A00C.01A	9	72967065	74329811	42	-0.2261	NEUTRAL	NA	4	"KLF9,SMC5,TMEM2,TRPM3"
TCGA.AA.A00D.01A	9	73002651	74489510	55	-0.2126	NEUTRAL	NA	4	"ABHD17B,KLF9,TMEM2,TRPM3"
TCGA.AA.A00Q.01A	9	73002651	79792594	238	0.1238	NEUTRAL	NA	23	"ABHD17B,ALDH1A1,ANXA1,C9orf40,C9orf41,C9orf57,C9orf85,FOXB2,GCNT1,GDA,KLF9,NMRK1,OSTF1,PCSK5,PRUNE2,RFK,RORB,TMC1,TMEM2,TRPM3,TRPM6,VPS13A,ZFAND5"
TCGA.AG.3881	9	73124172	141071474	23047	0.0742	NEUTRAL	NA	523	Too-Many
TCGA.EI.6512	9	74001473	140777369	22624	-0.0006	NEUTRAL	NA	522	Too-Many
TCGA.AY.A71X	9	74106054	107361709	11331	-0.0049	NEUTRAL	NA	158	Too-Many
TCGA.AG.3883	9	74262199	74416669	70	0.3417	NEUTRAL	NA	1	TMEM2
TCGA.AA.3850	9	74274315	75233653	298	0.33605	NEUTRAL	NA	7	"ABHD17B,C9orf57,C9orf85,GDA,TMC1,TMEM2,ZFAND5"
TCGA.AG.A00C.01A	9	74331369	75520825	59	0.0713	NEUTRAL	NA	8	"ABHD17B,ALDH1A1,C9orf57,C9orf85,GDA,TMC1,TMEM2,ZFAND5"
TCGA.AG.3883	9	74417486	90770446	5861	-0.2719	NEUTRAL	NA	54	"ABHD17B,AGTPBP1,ALDH1A1,ANXA1,C9orf153,C9orf170,C9orf40,C9orf41,C9orf57,C9orf64,C9orf85,CDK20,CEP78,CTSL,DAPK1,FOXB2,FRMD3,GAS1,GCNT1,GDA,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,NAA35,NMRK1,NTRK2,OSTF1,PCSK5,PRUNE2,PSAT1,RASEF,RFK,RMI1,RORB,SLC28A3,SPATA31C1,SPATA31C2,SPATA31D1,SPATA31D3,SPATA31D4,SPATA31E1,TLE1,TLE4,TMC1,TRPM6,UBQLN1,VPS13A,ZCCHC6,ZFAND5"
TCGA.AZ.4681	9	74774815	141071474	22409	0.0348	NEUTRAL	NA	518	Too-Many
TCGA.AA.A00D.01A	9	74817439	75450846	35	-0.0148	NEUTRAL	NA	3	"GDA,TMC1,ZFAND5"
TCGA.AA.3967.01A	9	74856021	80915449	295	0.1171	NEUTRAL	NA	21	"ALDH1A1,ANXA1,C9orf40,C9orf41,CEP78,FOXB2,GCNT1,GDA,GNA14,GNAQ,NMRK1,OSTF1,PCSK5,PRUNE2,PSAT1,RFK,RORB,TMC1,TRPM6,VPS13A,ZFAND5"
TCGA.AA.3850	9	75238581	75751321	130	-0.25235	NEUTRAL	NA	2	"ALDH1A1,TMC1"
TCGA.AG.3909.01A	9	75263473	75406815	12	0.2531	NEUTRAL	NA	1	TMC1
TCGA.AG.4009.01A	9	75263473	75406815	12	-0.0843	NEUTRAL	NA	1	TMC1
TCGA.AG.A008.01A	9	75263473	136899776	4012	0.1335	NEUTRAL	NA	423	Too-Many
TCGA.AA.3941	9	75285902	75778237	132	-0.0581	NEUTRAL	NA	3	"ALDH1A1,ANXA1,TMC1"
TCGA.AA.A00F.01A	9	75404017	75450846	8	0.3669	NEUTRAL	NA	1	TMC1
TCGA.CK.5914.01A	9	75406815	75450846	7	-0.4997	NEUTRAL	NA	1	TMC1
TCGA.AA.A00D.01A	9	75516063	75555023	12	-0.4746	NEUTRAL	NA	1	ALDH1A1
TCGA.AA.A00F.01A	9	75516063	77448872	66	-0.2053	NEUTRAL	NA	4	"ALDH1A1,ANXA1,RORB,TRPM6"
TCGA.AG.4009.01A	9	75516063	86356829	361	0.0911	NEUTRAL	NA	28	"ALDH1A1,ANXA1,C9orf40,C9orf41,CEP78,FOXB2,FRMD3,GCNT1,GKAP1,GNA14,GNAQ,IDNK,NMRK1,OSTF1,PCSK5,PRUNE2,PSAT1,RASEF,RFK,RORB,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,TRPM6,UBQLN1,VPS13A"
TCGA.AG.3906.01A	9	75516063	86530159	392	-0.0111	NEUTRAL	NA	29	"ALDH1A1,ANXA1,C9orf40,C9orf41,CEP78,FOXB2,FRMD3,GCNT1,GKAP1,GNA14,GNAQ,IDNK,KIF27,NMRK1,OSTF1,PCSK5,PRUNE2,PSAT1,RASEF,RFK,RORB,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,TRPM6,UBQLN1,VPS13A"
TCGA.AA.A010.01A	9	75520825	77676372	83	0.1041	NEUTRAL	NA	7	"ALDH1A1,ANXA1,C9orf40,C9orf41,NMRK1,RORB,TRPM6"
TCGA.AG.A00C.01A	9	75524479	77442571	63	-0.2666	NEUTRAL	NA	4	"ALDH1A1,ANXA1,RORB,TRPM6"
TCGA.CK.5914.01A	9	75538913	75541962	3	0.2473	NEUTRAL	NA	1	ALDH1A1
TCGA.AA.A00D.01A	9	75567787	77365512	32	-0.137	NEUTRAL	NA	4	"ALDH1A1,ANXA1,RORB,TRPM6"
TCGA.AA.3867	9	75695676	76300736	172	-0.4197	NEUTRAL	NA	1	ANXA1
TCGA.AA.3844	9	75705506	76300736	167	0.0014	NEUTRAL	NA	1	ANXA1
TCGA.AA.3870	9	75729553	89678530	4992	0.3512	NEUTRAL	NA	40	"AGTPBP1,ANXA1,C9orf153,C9orf40,C9orf41,C9orf64,CEP78,FOXB2,FRMD3,GAS1,GCNT1,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,NAA35,NMRK1,NTRK2,OSTF1,PCSK5,PRUNE2,PSAT1,RASEF,RFK,RMI1,RORB,SLC28A3,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,TRPM6,UBQLN1,VPS13A,ZCCHC6"
TCGA.AA.3941	9	76191828	76300736	41	-0.367	NEUTRAL	NA	0	None
TCGA.AA.3956	9	76310438	104757229	9720	0.0219	NEUTRAL	NA	142	Too-Many
TCGA.AA.3941	9	76316340	78786217	878	-0.2788	NEUTRAL	NA	7	"C9orf40,C9orf41,NMRK1,OSTF1,PCSK5,RORB,TRPM6"
TCGA.AA.3844	9	76320546	77197160	235	-0.0036	NEUTRAL	NA	1	RORB
TCGA.AA.3977	9	76320546	89678530	4820	0.007	NEUTRAL	NA	39	"AGTPBP1,C9orf153,C9orf40,C9orf41,C9orf64,CEP78,FOXB2,FRMD3,GAS1,GCNT1,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,NAA35,NMRK1,NTRK2,OSTF1,PCSK5,PRUNE2,PSAT1,RASEF,RFK,RMI1,RORB,SLC28A3,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,TRPM6,UBQLN1,VPS13A,ZCCHC6"
TCGA.AA.3867	9	76335315	104391743	9570	-0.1147	NEUTRAL	NA	142	Too-Many
TCGA.AA.3850	9	77177141	78811376	665	-0.18445	NEUTRAL	NA	7	"C9orf40,C9orf41,NMRK1,OSTF1,PCSK5,RORB,TRPM6"
TCGA.AA.3982	9	77197470	78068838	280	0.064	NEUTRAL	NA	6	"C9orf40,C9orf41,NMRK1,OSTF1,RORB,TRPM6"
TCGA.AA.3844	9	77197470	81480142	1651	0.3762	NEUTRAL	NA	16	"C9orf40,C9orf41,CEP78,FOXB2,GCNT1,GNA14,GNAQ,NMRK1,OSTF1,PCSK5,PRUNE2,PSAT1,RFK,RORB,TRPM6,VPS13A"
TCGA.AZ.4684.01A	9	77277339	79922859	182	0.1186	NEUTRAL	NA	12	"C9orf40,C9orf41,FOXB2,GCNT1,NMRK1,OSTF1,PCSK5,PRUNE2,RFK,RORB,TRPM6,VPS13A"
TCGA.AA.A00D.01A	9	77390782	84607687	213	-0.0139	NEUTRAL	NA	20	"C9orf40,C9orf41,CEP78,FOXB2,GCNT1,GNA14,GNAQ,NMRK1,OSTF1,PCSK5,PRUNE2,PSAT1,RFK,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,TRPM6,VPS13A"
TCGA.AG.A00C.01A	9	77448872	77732342	23	0.159	NEUTRAL	NA	5	"C9orf40,C9orf41,NMRK1,OSTF1,TRPM6"
TCGA.AG.3909.01A	9	77454901	77697921	23	-0.2377	NEUTRAL	NA	4	"C9orf40,C9orf41,NMRK1,TRPM6"
TCGA.AA.A00F.01A	9	77454901	77732342	24	0.1658	NEUTRAL	NA	5	"C9orf40,C9orf41,NMRK1,OSTF1,TRPM6"
TCGA.CK.5914.01A	9	77567082	78722115	37	0.2931	NEUTRAL	NA	5	"C9orf40,C9orf41,NMRK1,OSTF1,PCSK5"
TCGA.AA.A010.01A	9	77703528	79852901	106	-0.039	NEUTRAL	NA	7	"FOXB2,GCNT1,OSTF1,PCSK5,PRUNE2,RFK,VPS13A"
TCGA.AA.A00N.01A	9	77732342	78748983	19	0.2951	NEUTRAL	NA	2	"OSTF1,PCSK5"
TCGA.AG.3909.01A	9	77732342	78748983	19	0.2555	NEUTRAL	NA	2	"OSTF1,PCSK5"
TCGA.AA.A00F.01A	9	77742469	78973387	32	-0.1829	NEUTRAL	NA	2	"OSTF1,PCSK5"
TCGA.AG.A00C.01A	9	77742469	80537070	158	-0.1657	NEUTRAL	NA	9	"FOXB2,GCNT1,GNA14,GNAQ,OSTF1,PCSK5,PRUNE2,RFK,VPS13A"
TCGA.AA.3982	9	78069678	78486640	210	-0.3739	NEUTRAL	NA	0	None
TCGA.AA.3982	9	78487242	78562625	37	0.1374	NEUTRAL	NA	1	PCSK5
TCGA.AA.3982	9	78562668	78663604	48	-0.2211	NEUTRAL	NA	1	PCSK5
TCGA.AA.3982	9	78677789	78723047	25	0.1981	NEUTRAL	NA	1	PCSK5
TCGA.AA.3982	9	78759287	81226838	932	0.1125	NEUTRAL	NA	10	"CEP78,FOXB2,GCNT1,GNA14,GNAQ,PCSK5,PRUNE2,PSAT1,RFK,VPS13A"
TCGA.AA.3941	9	78787219	81253944	920	0.2638	NEUTRAL	NA	10	"CEP78,FOXB2,GCNT1,GNA14,GNAQ,PCSK5,PRUNE2,PSAT1,RFK,VPS13A"
TCGA.AA.3850	9	78811934	79261521	217	0.27115	NEUTRAL	NA	4	"GCNT1,PCSK5,PRUNE2,RFK"
TCGA.CK.5914.01A	9	78973387	79121456	11	-0.3627	NEUTRAL	NA	3	"GCNT1,PCSK5,RFK"
TCGA.AG.3909.01A	9	79002286	86523330	258	0.1197	NEUTRAL	NA	20	"CEP78,FOXB2,FRMD3,GCNT1,GKAP1,GNA14,GNAQ,IDNK,KIF27,PRUNE2,PSAT1,RASEF,RFK,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,UBQLN1,VPS13A"
TCGA.AA.A00F.01A	9	79117970	86322378	156	-0.1105	NEUTRAL	NA	17	"CEP78,FOXB2,FRMD3,GCNT1,GNA14,GNAQ,IDNK,PRUNE2,PSAT1,RASEF,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,UBQLN1,VPS13A"
TCGA.AA.3850	9	79402877	79436616	20	-0.28895	NEUTRAL	NA	1	PRUNE2
TCGA.AA.3979	9	79426641	141071474	20698	0.0094	NEUTRAL	NA	504	Too-Many
TCGA.AA.3850	9	79437797	79903017	185	0.36725	NEUTRAL	NA	3	"FOXB2,PRUNE2,VPS13A"
TCGA.AA.A00N.01A	9	79468993	79816201	7	-0.3774	NEUTRAL	NA	3	"FOXB2,PRUNE2,VPS13A"
TCGA.CK.5914.01A	9	79520810	79816201	6	0.2225	NEUTRAL	NA	3	"FOXB2,PRUNE2,VPS13A"
TCGA.AH.6643	9	79592956	141071474	20647	0.0004	NEUTRAL	NA	503	Too-Many
TCGA.AA.3549	9	79623441	95891997	5730	0.0082	NEUTRAL	NA	66	"AGTPBP1,ASPN,AUH,BICD2,C9orf153,C9orf170,C9orf47,C9orf64,C9orf89,CDK20,CENPP,CEP78,CKS2,CTSL,DAPK1,DIRAS2,ECM2,FGD3,FOXB2,FRMD3,GADD45G,GAS1,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IARS,IDNK,IPPK,ISCA1,KIF27,LOC286238,NAA35,NFIL3,NINJ1,NOL8,NTRK2,NXNL2,OGN,OMD,PSAT1,RASEF,RMI1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC28A3,SPATA31C1,SPATA31C2,SPATA31D1,SPATA31D3,SPATA31D4,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,TLE1,TLE4,UBQLN1,VPS13A,ZCCHC6,ZNF484"
TCGA.AA.3695	9	79736525	141071474	20633	0.0259	NEUTRAL	NA	502	Too-Many
TCGA.AG.3727	9	79736525	141071474	20636	0.0296	NEUTRAL	NA	502	Too-Many
TCGA.AA.A00N.01A	9	79820205	79842996	14	0.2445	NEUTRAL	NA	1	VPS13A
TCGA.CK.5914.01A	9	79862135	79890367	6	0.3534	NEUTRAL	NA	1	VPS13A
TCGA.AA.3850	9	79913119	80881287	272	0.03555	NEUTRAL	NA	4	"CEP78,GNA14,GNAQ,VPS13A"
TCGA.AZ.4684.01A	9	79959047	88581473	278	0.077	NEUTRAL	NA	23	"AGTPBP1,C9orf64,CEP78,FRMD3,GKAP1,GNA14,GNAQ,HNRNPK,IDNK,KIF27,NAA35,NTRK2,PSAT1,RASEF,RMI1,SLC28A3,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,UBQLN1,VPS13A"
TCGA.CK.5914.01A	9	79959923	82188179	63	0.2502	NEUTRAL	NA	6	"CEP78,GNA14,GNAQ,PSAT1,TLE4,VPS13A"
TCGA.AA.A00Q.01A	9	79996855	90589238	292	0.0948	NEUTRAL	NA	34	"AGTPBP1,C9orf153,C9orf170,C9orf64,CDK20,CEP78,CTSL,DAPK1,FRMD3,GAS1,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,NAA35,NTRK2,PSAT1,RASEF,RMI1,SLC28A3,SPATA31C1,SPATA31D1,SPATA31D3,SPATA31D4,SPATA31E1,TLE1,TLE4,UBQLN1,VPS13A,ZCCHC6"
TCGA.AG.A00C.01A	9	80868069	80881401	7	0.022	NEUTRAL	NA	1	CEP78
TCGA.AA.3850	9	80887882	81067136	63	0.30345	NEUTRAL	NA	1	PSAT1
TCGA.AG.A00C.01A	9	80932551	82190996	7	0.0169	NEUTRAL	NA	2	"PSAT1,TLE4"
TCGA.AA.3850	9	81087539	81253944	65	0.06925	NEUTRAL	NA	0	None
TCGA.AA.3982	9	81228335	83898945	1086	-0.3762	NEUTRAL	NA	1	TLE4
TCGA.AA.3850	9	81270901	84040056	1119	-0.46765	NEUTRAL	NA	1	TLE4
TCGA.AA.3941	9	81270901	85890018	1644	-0.309	NEUTRAL	NA	7	"FRMD3,RASEF,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4"
TCGA.AA.3844	9	81483994	83726871	933	0.0201	NEUTRAL	NA	1	TLE4
TCGA.QL.A97D	9	81606410	81684047	33	-0.1467	NEUTRAL	NA	0	None
TCGA.QL.A97D	9	81684943	81856106	66	0.2154	NEUTRAL	NA	0	None
TCGA.QL.A97D	9	81860860	81980757	63	-0.2155	NEUTRAL	NA	0	None
TCGA.QL.A97D	9	81988150	100158051	6144	0.1636	NEUTRAL	NA	88	"AAED1,AGTPBP1,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf153,C9orf170,C9orf3,C9orf47,C9orf64,C9orf89,CCDC180,CDC14B,CDK20,CENPP,CKS2,CTSL,CTSV,DAPK1,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,FRMD3,GADD45G,GAS1,GKAP1,GOLM1,HABP4,HIATL1,HNRNPK,HSD17B3,IARS,IDNK,IPPK,ISCA1,KIF27,LOC158434,LOC286238,NAA35,NFIL3,NINJ1,NOL8,NTRK2,NUTM2F,NUTM2G,NXNL2,OGN,OMD,PHF2,PTCH1,PTPDC1,RASEF,RMI1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC28A3,SLC35D2,SPATA31C1,SPATA31C2,SPATA31D1,SPATA31D3,SPATA31D4,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,TLE1,TLE4,UBQLN1,WNK2,ZCCHC6,ZNF169,ZNF367,ZNF484,ZNF510,ZNF782"
TCGA.AA.3967.01A	9	82006167	95846767	557	0.0889	NEUTRAL	NA	58	"AGTPBP1,ASPN,AUH,BICD2,C9orf153,C9orf170,C9orf47,C9orf64,CDK20,CENPP,CKS2,CTSL,DAPK1,DIRAS2,ECM2,FGD3,FRMD3,GADD45G,GAS1,GKAP1,GOLM1,HNRNPK,IARS,IDNK,IPPK,ISCA1,KIF27,LOC286238,NAA35,NFIL3,NOL8,NTRK2,NXNL2,OGN,OMD,RASEF,RMI1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC28A3,SPATA31C1,SPATA31C2,SPATA31D1,SPATA31D3,SPATA31D4,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,TLE1,TLE4,UBQLN1,ZCCHC6,ZNF484"
TCGA.AG.A00C.01A	9	82227505	82337816	17	-0.3547	NEUTRAL	NA	1	TLE4
TCGA.CK.5914.01A	9	82227505	86514527	122	0.3761	NEUTRAL	NA	11	"FRMD3,GKAP1,IDNK,KIF27,RASEF,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,UBQLN1"
TCGA.AA.A02K.01A	9	82337315	96024877	616	0.3541	NEUTRAL	NA	61	"AGTPBP1,ASPN,AUH,BICD2,C9orf153,C9orf170,C9orf47,C9orf64,C9orf89,CDK20,CENPP,CKS2,CTSL,DAPK1,DIRAS2,ECM2,FGD3,FRMD3,GADD45G,GAS1,GKAP1,GOLM1,HNRNPK,IARS,IDNK,IPPK,ISCA1,KIF27,LOC286238,NAA35,NFIL3,NINJ1,NOL8,NTRK2,NXNL2,OGN,OMD,RASEF,RMI1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC28A3,SPATA31C1,SPATA31C2,SPATA31D1,SPATA31D3,SPATA31D4,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,TLE1,TLE4,UBQLN1,WNK2,ZCCHC6,ZNF484"
TCGA.AG.A00C.01A	9	82339902	86517963	97	0.0095	NEUTRAL	NA	11	"FRMD3,GKAP1,IDNK,KIF27,RASEF,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,UBQLN1"
TCGA.AA.A00N.01A	9	82339902	86518397	108	0.0237	NEUTRAL	NA	11	"FRMD3,GKAP1,IDNK,KIF27,RASEF,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,UBQLN1"
TCGA.AA.3848	9	82610834	86776380	1404	-0.0032	NEUTRAL	NA	13	"C9orf64,FRMD3,GKAP1,HNRNPK,IDNK,KIF27,RASEF,RMI1,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,UBQLN1"
TCGA.DM.A28A	9	82809202	82996675	86	0.0941	NEUTRAL	NA	0	None
TCGA.AF.3913	9	83477042	141071474	19206	-0.0368	NEUTRAL	NA	496	Too-Many
TCGA.AA.3982	9	83899259	84717630	201	0.1092	NEUTRAL	NA	4	"SPATA31D1,SPATA31D3,SPATA31D4,TLE1"
TCGA.AA.3850	9	84045794	84717630	159	0.31625	NEUTRAL	NA	4	"SPATA31D1,SPATA31D3,SPATA31D4,TLE1"
TCGA.CM.4747	9	84380829	105779915	7053	-0.4168	NEUTRAL	NA	125	Too-Many
TCGA.AA.3844	9	84723490	85789719	308	0.1341	NEUTRAL	NA	1	RASEF
TCGA.AA.3982	9	84723490	85811477	321	-0.288	NEUTRAL	NA	1	RASEF
TCGA.AA.3850	9	84723490	85876632	361	-0.40605	NEUTRAL	NA	2	"FRMD3,RASEF"
TCGA.AA.3819	9	85455958	133247452	16668	0.022	NEUTRAL	NA	347	Too-Many
TCGA.AA.A00D.01A	9	85597552	85640648	15	-0.4869	NEUTRAL	NA	1	RASEF
TCGA.AA.3982	9	85811824	89683060	1426	0.0826	NEUTRAL	NA	17	"AGTPBP1,C9orf153,C9orf64,FRMD3,GAS1,GKAP1,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,NAA35,NTRK2,RMI1,SLC28A3,UBQLN1,ZCCHC6"
TCGA.AA.A00D.01A	9	85862811	86451909	27	-0.0194	NEUTRAL	NA	5	"FRMD3,GKAP1,IDNK,KIF27,UBQLN1"
TCGA.AA.3850	9	85878614	87192475	515	0.15885	NEUTRAL	NA	9	"C9orf64,FRMD3,GKAP1,HNRNPK,IDNK,KIF27,RMI1,SLC28A3,UBQLN1"
TCGA.AA.3941	9	85891265	87099637	467	0.2908	NEUTRAL	NA	9	"C9orf64,FRMD3,GKAP1,HNRNPK,IDNK,KIF27,RMI1,SLC28A3,UBQLN1"
TCGA.G4.6321	9	86216007	141071474	18341	0.0084	NEUTRAL	NA	490	Too-Many
TCGA.AG.3726	9	86305359	86877642	149	0.0022	NEUTRAL	NA	6	"C9orf64,GKAP1,HNRNPK,KIF27,RMI1,UBQLN1"
TCGA.AA.A00F.01A	9	86354549	86615925	46	0.2228	NEUTRAL	NA	5	"C9orf64,GKAP1,HNRNPK,KIF27,RMI1"
TCGA.AG.4009.01A	9	86357392	86571117	31	-0.3425	NEUTRAL	NA	3	"C9orf64,GKAP1,KIF27"
TCGA.AA.A010.01A	9	86465007	86498736	7	0.2771	NEUTRAL	NA	1	KIF27
TCGA.AA.A00D.01A	9	86465007	86523330	15	-0.4095	NEUTRAL	NA	1	KIF27
TCGA.AA.A010.01A	9	86501925	86514527	5	-0.308	NEUTRAL	NA	1	KIF27
TCGA.CK.5914.01A	9	86517963	86523330	3	-0.1059	NEUTRAL	NA	1	KIF27
TCGA.AA.A010.01A	9	86517963	86530159	4	0.317	NEUTRAL	NA	1	KIF27
TCGA.AG.3906.01A	9	86584224	87563339	50	0.0986	NEUTRAL	NA	4	"HNRNPK,NTRK2,RMI1,SLC28A3"
TCGA.AG.4009.01A	9	86584224	99130469	628	0.0661	NEUTRAL	NA	67	"AGTPBP1,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf153,C9orf170,C9orf3,C9orf47,C9orf89,CDK20,CENPP,CKS2,CTSL,DAPK1,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,GAS1,GOLM1,HIATL1,HNRNPK,HSD17B3,IARS,IPPK,ISCA1,LOC158434,LOC286238,NAA35,NFIL3,NINJ1,NOL8,NTRK2,NUTM2F,NXNL2,OGN,OMD,PHF2,PTCH1,PTPDC1,RMI1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC28A3,SLC35D2,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,WNK2,ZCCHC6,ZNF169,ZNF484"
TCGA.AA.3861.01A	9	86589417	90499436	174	-0.3355	NEUTRAL	NA	15	"AGTPBP1,C9orf153,C9orf170,CTSL,DAPK1,GAS1,GOLM1,HNRNPK,ISCA1,NAA35,NTRK2,RMI1,SLC28A3,SPATA31E1,ZCCHC6"
TCGA.AA.3862.01A	9	86589417	90499436	175	-0.3119	NEUTRAL	NA	15	"AGTPBP1,C9orf153,C9orf170,CTSL,DAPK1,GAS1,GOLM1,HNRNPK,ISCA1,NAA35,NTRK2,RMI1,SLC28A3,SPATA31E1,ZCCHC6"
TCGA.AA.A010.01A	9	86591852	91962964	235	0.2235	NEUTRAL	NA	26	"AGTPBP1,C9orf153,C9orf170,C9orf47,CDK20,CKS2,CTSL,DAPK1,GAS1,GOLM1,HNRNPK,ISCA1,LOC286238,NAA35,NTRK2,NXNL2,RMI1,S1PR3,SECISBP2,SHC3,SLC28A3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,ZCCHC6"
TCGA.AA.3848	9	86777366	86790452	9	-0.3358	NEUTRAL	NA	0	None
TCGA.AA.3848	9	86791956	117080387	10891	0.042	NEUTRAL	NA	186	Too-Many
TCGA.AG.3902	9	86836665	138402651	17734	0.2955	NEUTRAL	NA	400	Too-Many
TCGA.AG.A00C.01A	9	86893095	88307607	60	-0.2252	NEUTRAL	NA	3	"AGTPBP1,NTRK2,SLC28A3"
TCGA.AA.A00F.01A	9	86893095	88880907	95	-0.1729	NEUTRAL	NA	7	"AGTPBP1,C9orf153,GOLM1,ISCA1,NAA35,NTRK2,SLC28A3"
TCGA.AA.A00D.01A	9	86893095	99086315	549	0.029	NEUTRAL	NA	65	"AGTPBP1,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf153,C9orf170,C9orf3,C9orf47,C9orf89,CDK20,CENPP,CKS2,CTSL,DAPK1,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,GAS1,GOLM1,HIATL1,HSD17B3,IARS,IPPK,ISCA1,LOC158434,LOC286238,NAA35,NFIL3,NINJ1,NOL8,NTRK2,NUTM2F,NXNL2,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC28A3,SLC35D2,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,WNK2,ZCCHC6,ZNF169,ZNF484"
TCGA.AA.3941	9	87107384	87952693	376	0.0526	NEUTRAL	NA	1	NTRK2
TCGA.AA.3850	9	87196966	87792260	263	-0.12615	NEUTRAL	NA	1	NTRK2
TCGA.AG.3906.01A	9	87570149	95477396	349	-0.1853	NEUTRAL	NA	40	"AGTPBP1,ASPN,AUH,BICD2,C9orf153,C9orf170,C9orf47,CDK20,CENPP,CKS2,CTSL,DAPK1,DIRAS2,ECM2,GADD45G,GAS1,GOLM1,IARS,IPPK,ISCA1,LOC286238,NAA35,NFIL3,NOL8,NTRK2,NXNL2,OGN,OMD,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,SPTLC1,SYK,ZCCHC6"
TCGA.AA.3850	9	87795893	89268420	413	0.24795	NEUTRAL	NA	6	"AGTPBP1,C9orf153,GOLM1,ISCA1,NAA35,ZCCHC6"
TCGA.BM.6198	9	87885046	99167918	3813	-0.48635	NEUTRAL	NA	64	"AGTPBP1,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf153,C9orf170,C9orf3,C9orf47,C9orf89,CDK20,CENPP,CKS2,CTSL,DAPK1,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,GAS1,GOLM1,HIATL1,HSD17B3,IARS,IPPK,ISCA1,LOC158434,LOC286238,NAA35,NFIL3,NINJ1,NOL8,NUTM2F,NXNL2,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC35D2,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,WNK2,ZCCHC6,ZNF169,ZNF367,ZNF484"
TCGA.AA.3941	9	87953385	89316567	379	0.3514	NEUTRAL	NA	6	"AGTPBP1,C9orf153,GOLM1,ISCA1,NAA35,ZCCHC6"
TCGA.AA.A00N.01A	9	88161977	88201699	5	-0.1253	NEUTRAL	NA	1	AGTPBP1
TCGA.AG.3909.01A	9	88161977	88576878	29	-0.1097	NEUTRAL	NA	2	"AGTPBP1,NAA35"
TCGA.AG.A00C.01A	9	88574654	88844389	30	-0.1422	NEUTRAL	NA	3	"C9orf153,GOLM1,NAA35"
TCGA.AG.3909.01A	9	88589824	88886875	30	0.3615	NEUTRAL	NA	4	"C9orf153,GOLM1,ISCA1,NAA35"
TCGA.AA.3509.01A	9	88601310	91926137	145	-0.0544	NEUTRAL	NA	20	"C9orf153,C9orf170,C9orf47,CDK20,CKS2,CTSL,DAPK1,GAS1,GOLM1,ISCA1,LOC286238,NAA35,NXNL2,S1PR3,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,ZCCHC6"
TCGA.AZ.4684.01A	9	88601310	91926137	145	0.0269	NEUTRAL	NA	20	"C9orf153,C9orf170,C9orf47,CDK20,CKS2,CTSL,DAPK1,GAS1,GOLM1,ISCA1,LOC286238,NAA35,NXNL2,S1PR3,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,ZCCHC6"
TCGA.AA.A00F.01A	9	88886875	88967563	27	0.3315	NEUTRAL	NA	2	"ISCA1,ZCCHC6"
TCGA.CK.5914.01A	9	88937810	90301418	33	0.1962	NEUTRAL	NA	4	"C9orf170,DAPK1,GAS1,ZCCHC6"
TCGA.AG.3726	9	89170856	92315781	1253	-0.0172	NEUTRAL	NA	18	"C9orf170,C9orf47,CDK20,CKS2,CTSL,DAPK1,GADD45G,GAS1,LOC286238,NXNL2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.AA.3850	9	89269188	89854040	270	-0.10115	NEUTRAL	NA	2	"C9orf170,GAS1"
TCGA.AA.3941	9	89316892	89673025	154	-0.0954	NEUTRAL	NA	1	GAS1
TCGA.AA.A00F.01A	9	89560636	90219820	4	-0.2814	NEUTRAL	NA	3	"C9orf170,DAPK1,GAS1"
TCGA.AA.A00N.01A	9	89560636	90321049	27	0.2074	NEUTRAL	NA	3	"C9orf170,DAPK1,GAS1"
TCGA.AG.3909.01A	9	89560636	90321049	26	0.0979	NEUTRAL	NA	3	"C9orf170,DAPK1,GAS1"
TCGA.AA.3844	9	89570730	89711102	63	-0.0975	NEUTRAL	NA	0	None
TCGA.AA.3941	9	89683627	89854040	71	-0.0174	NEUTRAL	NA	1	C9orf170
TCGA.AA.3982	9	89684171	93751748	1599	0.195	NEUTRAL	NA	19	"C9orf170,C9orf47,CDK20,CKS2,CTSL,DAPK1,DIRAS2,GADD45G,LOC286238,NXNL2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,SYK"
TCGA.AA.3864	9	89684171	106682228	5577	0.0788	NEUTRAL	NA	104	Too-Many
TCGA.AA.3977	9	89685286	113300205	8384	0.0619	NEUTRAL	NA	140	Too-Many
TCGA.AG.A00C.01A	9	89763599	90321049	25	-0.2068	NEUTRAL	NA	2	"C9orf170,DAPK1"
TCGA.AD.6888	9	89854040	141071474	17061	-0.0205	NEUTRAL	NA	473	Too-Many
TCGA.AA.3850	9	89861966	92869369	1124	0.31435	NEUTRAL	NA	16	"C9orf47,CDK20,CKS2,CTSL,DAPK1,GADD45G,LOC286238,NXNL2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.AA.3941	9	89861966	93111240	1213	0.3614	NEUTRAL	NA	16	"C9orf47,CDK20,CKS2,CTSL,DAPK1,GADD45G,LOC286238,NXNL2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.A6.3808.01A	9	90317902	90502170	20	-0.3396	NEUTRAL	NA	3	"CTSL,DAPK1,SPATA31E1"
TCGA.AA.A01Q.01A	9	90342472	90395995	10	-0.4472	NEUTRAL	NA	1	CTSL
TCGA.AG.A00C.01A	9	90387872	91770768	47	-0.1209	NEUTRAL	NA	10	"C9orf47,CDK20,LOC286238,NXNL2,S1PR3,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.AA.A00F.01A	9	90387872	99314029	440	0.0415	NEUTRAL	NA	56	"ASPN,AUH,BARX1,BICD2,C9orf129,C9orf3,C9orf47,C9orf89,CDC14B,CDK20,CENPP,CKS2,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,HABP4,HIATL1,HSD17B3,IARS,IPPK,LOC158434,LOC286238,NFIL3,NINJ1,NOL8,NUTM2F,NXNL2,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC35D2,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,WNK2,ZNF169,ZNF367,ZNF484"
TCGA.AG.3909.01A	9	90388388	99735091	517	-0.051	NEUTRAL	NA	60	"AAED1,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf3,C9orf47,C9orf89,CDC14B,CDK20,CENPP,CKS2,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,HABP4,HIATL1,HSD17B3,IARS,IPPK,LOC158434,LOC286238,NFIL3,NINJ1,NOL8,NUTM2F,NUTM2G,NXNL2,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC35D2,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1,SPTLC1,SUSD3,SYK,WNK2,ZNF169,ZNF367,ZNF484,ZNF510,ZNF782"
TCGA.AA.A01Q.01A	9	90401615	91995894	60	0.1982	NEUTRAL	NA	13	"C9orf47,CDK20,CKS2,LOC286238,NXNL2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.AG.3891.01A	9	90584061	92014136	63	-0.2063	NEUTRAL	NA	11	"C9orf47,CDK20,CKS2,LOC286238,NXNL2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C2,SPIN1"
TCGA.A6.3808.01A	9	90584061	95055624	161	-0.0366	NEUTRAL	NA	19	"AUH,C9orf47,CDK20,CKS2,DIRAS2,GADD45G,IARS,LOC286238,NFIL3,NXNL2,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C2,SPIN1,SPTLC1,SYK"
TCGA.AA.3930.01A	9	90584061	96418159	315	0.0015	NEUTRAL	NA	37	"ASPN,AUH,BICD2,C9orf129,C9orf47,C9orf89,CDK20,CENPP,CKS2,DIRAS2,ECM2,FAM120A,FAM120AOS,FGD3,GADD45G,IARS,IPPK,LOC286238,NFIL3,NINJ1,NOL8,NXNL2,OGN,OMD,PHF2,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C2,SPIN1,SPTLC1,SUSD3,SYK,WNK2,ZNF484"
TCGA.AA.3861.01A	9	90584061	116861188	1633	-0.1714	NEUTRAL	NA	171	Too-Many
TCGA.AA.3862.01A	9	90584061	116861188	1646	-0.0905	NEUTRAL	NA	171	Too-Many
TCGA.AG.A01L.01A	9	90584061	138011333	3423	-0.046	NEUTRAL	NA	382	Too-Many
TCGA.AG.3883	9	90771309	101063069	3178	0.0356	NEUTRAL	NA	72	"AAED1,ANP32B,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf156,C9orf3,C9orf47,C9orf89,CCDC180,CDC14B,CENPP,CKS2,CORO2A,CTSV,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,FOXE1,GABBR2,GADD45G,HABP4,HEMGN,HIATL1,HSD17B3,IARS,IPPK,LOC158434,LOC286238,NANS,NCBP1,NFIL3,NINJ1,NOL8,NUTM2F,NUTM2G,NXNL2,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC35D2,SPIN1,SPTLC1,SUSD3,SYK,TBC1D2,TDRD7,TMOD1,TRIM14,TSTD2,WNK2,XPA,ZNF169,ZNF367,ZNF484,ZNF510,ZNF782"
TCGA.CA.5254	9	90936206	91268540	70	-0.4682	NEUTRAL	NA	3	"LOC286238,NXNL2,SPIN1"
TCGA.AA.3976	9	91045159	136574243	15495	-0.0918	NEUTRAL	NA	372	Too-Many
TCGA.AG.3584	9	91229666	141071474	16505	0.3767	NEUTRAL	NA	465	Too-Many
TCGA.CA.5254	9	91279480	98739571	2402	-0.017	NEUTRAL	NA	43	"ASPN,AUH,BARX1,BICD2,C9orf129,C9orf3,C9orf47,C9orf89,CENPP,CKS2,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,HIATL1,IARS,IPPK,NFIL3,NINJ1,NOL8,NUTM2F,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SPTLC1,SUSD3,SYK,WNK2,ZNF169,ZNF484"
TCGA.AA.A00Q.01A	9	91605894	99098931	399	0.1514	NEUTRAL	NA	46	"ASPN,AUH,BARX1,BICD2,C9orf129,C9orf3,C9orf47,C9orf89,CENPP,CKS2,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,HIATL1,HSD17B3,IARS,IPPK,LOC158434,NFIL3,NINJ1,NOL8,NUTM2F,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,S1PR3,SECISBP2,SEMA4D,SHC3,SLC35D2,SPTLC1,SUSD3,SYK,WNK2,ZNF169,ZNF484"
TCGA.AG.A011.01A	9	91616074	141015884	3659	0.0849	NEUTRAL	NA	463	Too-Many
TCGA.AA.3509.01A	9	91933413	98683410	414	-0.0854	NEUTRAL	NA	39	"ASPN,AUH,BARX1,BICD2,C9orf129,C9orf3,C9orf89,CENPP,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,HIATL1,IARS,IPPK,NFIL3,NINJ1,NOL8,NUTM2F,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,SECISBP2,SEMA4D,SPTLC1,SUSD3,SYK,WNK2,ZNF169,ZNF484"
TCGA.AZ.4684.01A	9	91933413	98683410	414	-0.0127	NEUTRAL	NA	39	"ASPN,AUH,BARX1,BICD2,C9orf129,C9orf3,C9orf89,CENPP,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,GADD45G,HIATL1,IARS,IPPK,NFIL3,NINJ1,NOL8,NUTM2F,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,SECISBP2,SEMA4D,SPTLC1,SUSD3,SYK,WNK2,ZNF169,ZNF484"
TCGA.AA.A00N.01A	9	91956210	94087545	47	0.2526	NEUTRAL	NA	6	"AUH,DIRAS2,GADD45G,SECISBP2,SEMA4D,SYK"
TCGA.AG.A00C.01A	9	91961765	93649981	35	-0.3142	NEUTRAL	NA	5	"DIRAS2,GADD45G,SECISBP2,SEMA4D,SYK"
TCGA.CK.5914.01A	9	91993590	95043000	94	0.1736	NEUTRAL	NA	9	"AUH,DIRAS2,GADD45G,IARS,NFIL3,ROR2,SEMA4D,SPTLC1,SYK"
TCGA.AA.A01Q.01A	9	92017738	95107939	92	0.0141	NEUTRAL	NA	11	"AUH,CENPP,DIRAS2,GADD45G,IARS,NFIL3,NOL8,ROR2,SEMA4D,SPTLC1,SYK"
TCGA.AA.3850	9	92870112	93442336	214	0.00825	NEUTRAL	NA	1	DIRAS2
TCGA.AA.3941	9	93126347	94042754	421	0.3134	NEUTRAL	NA	3	"AUH,DIRAS2,SYK"
TCGA.AA.3850	9	93445062	98697962	1640	0.32785	NEUTRAL	NA	35	"ASPN,AUH,BARX1,BICD2,C9orf129,C9orf3,C9orf89,CENPP,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,HIATL1,IARS,IPPK,NFIL3,NINJ1,NOL8,NUTM2F,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,SPTLC1,SUSD3,SYK,WNK2,ZNF169,ZNF484"
TCGA.AG.3891.01A	9	93629360	104086247	752	0.0039	NEUTRAL	NA	77	"AAED1,ALG2,ANKS6,ANP32B,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf156,C9orf3,C9orf89,CCDC180,CDC14B,CENPP,COL15A1,CORO2A,CTSV,ECM2,ERCC6L2,ERP44,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,FOXE1,GABBR2,GALNT12,HABP4,HEMGN,HIATL1,HSD17B3,IARS,INVS,IPPK,LOC158434,LPPR1,MSANTD3,MSANTD3-TMEFF1,MURC,NANS,NCBP1,NFIL3,NINJ1,NOL8,NR4A3,NUTM2F,NUTM2G,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,SEC61B,SLC35D2,SPTLC1,STX17,SUSD3,SYK,TBC1D2,TDRD7,TEX10,TGFBR1,TMEFF1,TMOD1,TRIM14,TSTD2,WNK2,XPA,ZNF169,ZNF367,ZNF484,ZNF510,ZNF782"
TCGA.AG.A00C.01A	9	93650760	95067977	78	0.0316	NEUTRAL	NA	7	"AUH,IARS,NFIL3,NOL8,ROR2,SPTLC1,SYK"
TCGA.AA.3982	9	93754719	102171466	2566	0.2388	NEUTRAL	NA	66	"AAED1,ALG2,ANKS6,ANP32B,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf156,C9orf3,C9orf89,CCDC180,CDC14B,CENPP,COL15A1,CORO2A,CTSV,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,FOXE1,GABBR2,GALNT12,HABP4,HEMGN,HIATL1,HSD17B3,IARS,IPPK,LOC158434,NANS,NCBP1,NFIL3,NINJ1,NOL8,NUTM2F,NUTM2G,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,SEC61B,SLC35D2,SPTLC1,SUSD3,TBC1D2,TDRD7,TGFBR1,TMOD1,TRIM14,TSTD2,WNK2,XPA,ZNF169,ZNF367,ZNF484,ZNF510,ZNF782"
TCGA.SS.A7HO	9	93952939	95921415	533	-0.3562	NEUTRAL	NA	18	"ASPN,AUH,BICD2,C9orf89,CENPP,ECM2,FGD3,IARS,IPPK,NFIL3,NINJ1,NOL8,OGN,OMD,ROR2,SPTLC1,SUSD3,ZNF484"
TCGA.A6.A56B	9	94210211	124748339	11156	0.3131	NEUTRAL	NA	185	Too-Many
TCGA.AG.3726	9	94352660	121221129	9851	0.0246	NEUTRAL	NA	171	Too-Many
TCGA.AA.A00N.01A	9	94456599	94877523	28	-0.2624	NEUTRAL	NA	2	"ROR2,SPTLC1"
TCGA.AA.A00N.01A	9	95007204	95061105	30	0.1987	NEUTRAL	NA	2	"IARS,NOL8"
TCGA.CK.5914.01A	9	95047967	95099771	25	-0.436	NEUTRAL	NA	3	"CENPP,IARS,NOL8"
TCGA.AG.A00C.01A	9	95099771	99114258	266	-0.033	NEUTRAL	NA	31	"ASPN,BARX1,BICD2,C9orf129,C9orf3,C9orf89,CENPP,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,HIATL1,HSD17B3,IPPK,LOC158434,NINJ1,NUTM2F,OGN,OMD,PHF2,PTCH1,PTPDC1,SLC35D2,SUSD3,WNK2,ZNF169,ZNF484"
TCGA.CM.4746	9	95101728	141071474	15088	0.005	NEUTRAL	NA	449	Too-Many
TCGA.AA.A01Q.01A	9	95141992	95373535	26	0.3075	NEUTRAL	NA	5	"ASPN,CENPP,ECM2,OGN,OMD"
TCGA.AA.A010.01A	9	95177387	95232929	8	0.2109	NEUTRAL	NA	3	"ASPN,CENPP,OMD"
TCGA.CK.5914.01A	9	95374761	95420842	14	-0.4874	NEUTRAL	NA	2	"CENPP,IPPK"
TCGA.AA.A00L.01A	9	95374761	95475639	16	0.3496	NEUTRAL	NA	3	"BICD2,CENPP,IPPK"
TCGA.AA.A00N.01A	9	95374761	95637213	28	-0.4258	NEUTRAL	NA	4	"BICD2,CENPP,IPPK,ZNF484"
TCGA.A6.3808.01A	9	95374761	96418752	116	-0.2085	NEUTRAL	NA	13	"BICD2,C9orf129,C9orf89,CENPP,FAM120A,FAM120AOS,FGD3,IPPK,NINJ1,PHF2,SUSD3,WNK2,ZNF484"
TCGA.CK.5914.01A	9	95432144	95610059	11	0.1198	NEUTRAL	NA	3	"BICD2,IPPK,ZNF484"
TCGA.AG.3906.01A	9	95491255	96021163	39	-0.0899	NEUTRAL	NA	7	"BICD2,C9orf89,FGD3,NINJ1,SUSD3,WNK2,ZNF484"
TCGA.AA.A01Q.01A	9	95608471	95782552	10	0.3537	NEUTRAL	NA	2	"FGD3,ZNF484"
TCGA.AA.A00L.01A	9	95608471	123624148	1381	0.0477	NEUTRAL	NA	166	Too-Many
TCGA.CK.5914.01A	9	95780361	97041014	108	-0.0796	NEUTRAL	NA	12	"BARX1,C9orf129,C9orf89,FAM120A,FAM120AOS,FGD3,NINJ1,PHF2,PTPDC1,SUSD3,WNK2,ZNF169"
TCGA.AA.A00N.01A	9	95780361	97741589	157	-0.0631	NEUTRAL	NA	17	"BARX1,C9orf129,C9orf3,C9orf89,FAM120A,FAM120AOS,FBP1,FBP2,FGD3,HIATL1,NINJ1,NUTM2F,PHF2,PTPDC1,SUSD3,WNK2,ZNF169"
TCGA.AA.A010.01A	9	95846767	95947202	10	-0.4915	NEUTRAL	NA	3	"C9orf89,NINJ1,SUSD3"
TCGA.AA.A01Q.01A	9	95869919	95875222	5	0.3079	NEUTRAL	NA	1	C9orf89
TCGA.AA.3967.01A	9	95869919	96097638	32	-0.3402	NEUTRAL	NA	4	"C9orf129,C9orf89,NINJ1,WNK2"
TCGA.AA.A01Q.01A	9	96024119	96320822	34	0.2861	NEUTRAL	NA	4	"C9orf129,FAM120A,FAM120AOS,WNK2"
TCGA.DM.A28A	9	96105430	97532363	415	0.2759	NEUTRAL	NA	12	"BARX1,C9orf129,C9orf3,FAM120A,FAM120AOS,FBP1,FBP2,HIATL1,NUTM2F,PHF2,PTPDC1,ZNF169"
TCGA.AG.3906.01A	9	96209835	96425752	27	0.0205	NEUTRAL	NA	3	"FAM120A,FAM120AOS,PHF2"
TCGA.AA.3967.01A	9	96209835	113099963	904	0.1864	NEUTRAL	NA	100	"AAED1,ABCA1,ACTL7A,ACTL7B,AKAP2,ALDOB,ALG2,ANKS6,ANP32B,BAAT,BARX1,C9orf152,C9orf156,C9orf3,CCDC180,CDC14B,COL15A1,CORO2A,CTNNAL1,CTSV,CYLC2,EPB41L4B,ERCC6L2,ERP44,FAM120A,FAM120AOS,FAM206A,FANCC,FBP1,FBP2,FKTN,FOXE1,FRRS1L,FSD1L,GABBR2,GALNT12,GRIN3A,HABP4,HEMGN,HIATL1,HSD17B3,IKBKAP,INVS,KLF4,LOC158434,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NANS,NCBP1,NIPSNAP3A,NIPSNAP3B,NR4A3,NUTM2F,NUTM2G,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PALM2,PALM2-AKAP2,PHF2,PPP3R2,PTCH1,PTPDC1,PTPN3,RAD23B,RNF20,SEC61B,SLC35D2,SLC44A1,SMC2,STX17,TAL2,TBC1D2,TDRD7,TEX10,TGFBR1,TMEFF1,TMEM245,TMEM246,TMEM38B,TMOD1,TRIM14,TSTD2,TXN,TXNDC8,XPA,ZNF169,ZNF189,ZNF367,ZNF462,ZNF510,ZNF782"
TCGA.AA.A01Q.01A	9	96323344	96714953	26	-0.3506	NEUTRAL	NA	3	"BARX1,FAM120A,PHF2"
TCGA.AG.A01W.01A	9	96386628	96422395	9	-0.3748	NEUTRAL	NA	1	PHF2
TCGA.A6.3808.01A	9	96437160	98684535	121	0.0259	NEUTRAL	NA	12	"BARX1,C9orf3,ERCC6L2,FANCC,FBP1,FBP2,HIATL1,NUTM2F,PHF2,PTCH1,PTPDC1,ZNF169"
TCGA.AG.A01W.01A	9	96441207	100791230	354	-0.0161	NEUTRAL	NA	33	"AAED1,ANP32B,BARX1,C9orf156,C9orf3,CCDC180,CDC14B,CTSV,ERCC6L2,FANCC,FBP1,FBP2,FOXE1,HABP4,HEMGN,HIATL1,HSD17B3,LOC158434,NCBP1,NUTM2F,NUTM2G,PHF2,PTCH1,PTPDC1,SLC35D2,TDRD7,TMOD1,TSTD2,XPA,ZNF169,ZNF367,ZNF510,ZNF782"
TCGA.AA.3930.01A	9	96714429	141109683	4136	0.0553	NEUTRAL	NA	433	Too-Many
TCGA.AG.3906.01A	9	96714953	99122383	135	-0.1165	NEUTRAL	NA	14	"BARX1,C9orf3,ERCC6L2,FANCC,FBP1,FBP2,HIATL1,HSD17B3,LOC158434,NUTM2F,PTCH1,PTPDC1,SLC35D2,ZNF169"
TCGA.AA.A01Q.01A	9	96717154	97822938	52	0.1532	NEUTRAL	NA	8	"BARX1,C9orf3,FBP1,FBP2,HIATL1,NUTM2F,PTPDC1,ZNF169"
TCGA.AA.A02W.01A	9	96857582	141015884	3280	-0.2945	NEUTRAL	NA	431	Too-Many
TCGA.CI.6623	9	96897932	141071474	14609	-0.4301	NEUTRAL	NA	430	Too-Many
TCGA.CK.5914.01A	9	97346806	97690689	20	-0.0658	NEUTRAL	NA	3	"C9orf3,FBP1,FBP2"
TCGA.AA.A01Q.01A	9	97869330	100819042	241	0.0229	NEUTRAL	NA	25	"AAED1,ANP32B,C9orf156,CCDC180,CDC14B,CTSV,ERCC6L2,FANCC,FOXE1,HABP4,HEMGN,HSD17B3,LOC158434,NANS,NCBP1,NUTM2G,PTCH1,SLC35D2,TDRD7,TMOD1,TSTD2,XPA,ZNF367,ZNF510,ZNF782"
TCGA.AA.A00N.01A	9	97897578	99314029	99	-0.1478	NEUTRAL	NA	9	"CDC14B,ERCC6L2,FANCC,HABP4,HSD17B3,LOC158434,PTCH1,SLC35D2,ZNF367"
TCGA.CK.5914.01A	9	97912163	98669328	34	0.1441	NEUTRAL	NA	3	"ERCC6L2,FANCC,PTCH1"
TCGA.AA.3549	9	98077891	98147803	10	-0.1807	NEUTRAL	NA	1	FANCC
TCGA.AA.A010.01A	9	98224091	98239782	7	-0.0019	NEUTRAL	NA	1	PTCH1
TCGA.AA.3858	9	98259702	141071474	14285	0.0696	NEUTRAL	NA	423	Too-Many
TCGA.A6.2672	9	98286543	124720205	10062	0	NEUTRAL	NA	154	Too-Many
TCGA.D5.6534	9	98437157	98544974	67	0.3141	NEUTRAL	NA	0	None
TCGA.D5.6534	9	98545026	141071474	14104	0.0189	NEUTRAL	NA	422	Too-Many
TCGA.AA.A010.01A	9	98683410	98774465	15	-0.0878	NEUTRAL	NA	1	ERCC6L2
TCGA.A6.3808.01A	9	98732801	100227097	135	-0.3691	NEUTRAL	NA	14	"AAED1,CCDC180,CDC14B,CTSV,ERCC6L2,HABP4,HSD17B3,LOC158434,NUTM2G,SLC35D2,TDRD7,ZNF367,ZNF510,ZNF782"
TCGA.AA.3850	9	98738798	99550468	246	0.32705	NEUTRAL	NA	9	"AAED1,CDC14B,ERCC6L2,HABP4,HSD17B3,LOC158434,SLC35D2,ZNF367,ZNF510"
TCGA.AA.3509.01A	9	98740305	100379991	160	-0.1519	NEUTRAL	NA	16	"AAED1,CCDC180,CDC14B,CTSV,ERCC6L2,HABP4,HSD17B3,LOC158434,NUTM2G,SLC35D2,TDRD7,TMOD1,TSTD2,ZNF367,ZNF510,ZNF782"
TCGA.CK.5914.01A	9	98766785	99304041	46	0.1999	NEUTRAL	NA	7	"CDC14B,ERCC6L2,HABP4,HSD17B3,LOC158434,SLC35D2,ZNF367"
TCGA.AZ.4684.01A	9	98766785	100379991	159	-0.0629	NEUTRAL	NA	16	"AAED1,CCDC180,CDC14B,CTSV,ERCC6L2,HABP4,HSD17B3,LOC158434,NUTM2G,SLC35D2,TDRD7,TMOD1,TSTD2,ZNF367,ZNF510,ZNF782"
TCGA.AA.3489	9	98996726	141071474	13907	0.0259	NEUTRAL	NA	420	Too-Many
TCGA.AG.A00C.01A	9	99122383	99413891	33	0.3548	NEUTRAL	NA	5	"AAED1,CDC14B,HABP4,SLC35D2,ZNF367"
TCGA.BM.6198	9	99210583	141071474	13902	-0.07875	NEUTRAL	NA	417	Too-Many
TCGA.AG.3906.01A	9	99220610	99327628	21	0.1014	NEUTRAL	NA	2	"CDC14B,HABP4"
TCGA.AG.4009.01A	9	99227936	99252191	5	-0.2109	NEUTRAL	NA	1	HABP4
TCGA.AA.A00Q.01A	9	99246702	117087043	928	0.1513	NEUTRAL	NA	121	Too-Many
TCGA.AG.4009.01A	9	99265957	99327628	14	0.2699	NEUTRAL	NA	1	CDC14B
TCGA.AA.A00D.01A	9	99265957	116175744	815	0.0079	NEUTRAL	NA	114	Too-Many
TCGA.CA.5254	9	99383901	141071474	13815	-0.0305	NEUTRAL	NA	415	Too-Many
TCGA.AA.A00F.01A	9	99416940	99589339	9	-0.022	NEUTRAL	NA	3	"AAED1,ZNF510,ZNF782"
TCGA.AA.A00N.01A	9	99521013	99580196	7	0.298	NEUTRAL	NA	2	"ZNF510,ZNF782"
TCGA.AG.4009.01A	9	99521013	100138998	61	0.1171	NEUTRAL	NA	5	"CCDC180,CTSV,NUTM2G,ZNF510,ZNF782"
TCGA.AG.3906.01A	9	99521013	100249402	76	-0.0669	NEUTRAL	NA	6	"CCDC180,CTSV,NUTM2G,TDRD7,ZNF510,ZNF782"
TCGA.AG.A00C.01A	9	99521013	101911450	256	-0.0073	NEUTRAL	NA	23	"ANKS6,ANP32B,C9orf156,CCDC180,COL15A1,CORO2A,CTSV,FOXE1,GABBR2,GALNT12,HEMGN,NANS,NCBP1,NUTM2G,TBC1D2,TDRD7,TGFBR1,TMOD1,TRIM14,TSTD2,XPA,ZNF510,ZNF782"
TCGA.AG.3901	9	99537768	141071474	13799	0.0512	NEUTRAL	NA	414	Too-Many
TCGA.AA.3850	9	99583467	100377129	155	0.28845	NEUTRAL	NA	7	"CCDC180,CTSV,NUTM2G,TDRD7,TMOD1,TSTD2,ZNF782"
TCGA.AA.3556	9	99583467	141071474	13792	-0.0025	NEUTRAL	NA	413	Too-Many
TCGA.AG.3611.01A	9	99589339	100057080	12	-0.2321	NEUTRAL	NA	3	"CTSV,NUTM2G,ZNF782"
TCGA.AA.A00N.01A	9	99694057	99735091	9	0.3179	NEUTRAL	NA	1	NUTM2G
TCGA.AA.A010.01A	9	99795184	100057864	13	0.0455	NEUTRAL	NA	1	CTSV
TCGA.AG.3909.01A	9	99960538	100057080	5	-0.2016	NEUTRAL	NA	0	None
TCGA.D5.6535	9	100022751	100496976	141	-0.4894	NEUTRAL	NA	6	"CCDC180,NCBP1,TDRD7,TMOD1,TSTD2,XPA"
TCGA.CK.5914.01A	9	100053648	100076638	11	0.0069	NEUTRAL	NA	1	CCDC180
TCGA.AA.A00F.01A	9	100053648	102888628	252	0.0445	NEUTRAL	NA	25	"ALG2,ANKS6,ANP32B,C9orf156,CCDC180,COL15A1,CORO2A,ERP44,FOXE1,GABBR2,GALNT12,HEMGN,INVS,NANS,NCBP1,NR4A3,SEC61B,STX17,TBC1D2,TDRD7,TGFBR1,TMOD1,TRIM14,TSTD2,XPA"
TCGA.AG.3611.01A	9	100069955	115478663	714	0.1463	NEUTRAL	NA	92	"ABCA1,ACTL7A,ACTL7B,AKAP2,ALDOB,ALG2,ANKS6,ANP32B,BAAT,C9orf152,C9orf156,C9orf84,CCDC180,COL15A1,CORO2A,CTNNAL1,CYLC2,DNAJC25,DNAJC25-GNG10,EPB41L4B,ERP44,FAM206A,FKTN,FOXE1,FRRS1L,FSD1L,GABBR2,GALNT12,GNG10,GRIN3A,HEMGN,HSDL2,IKBKAP,INIP,INVS,KIAA0368,KIAA1958,KLF4,LPAR1,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,MUSK,NANS,NCBP1,NIPSNAP3A,NIPSNAP3B,NR4A3,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,OR2K2,PALM2,PALM2-AKAP2,PPP3R2,PTBP3,PTGR1,PTPN3,RAD23B,RNF20,SEC61B,SLC44A1,SMC2,STX17,SUSD1,SVEP1,TAL2,TBC1D2,TDRD7,TEX10,TGFBR1,TMEFF1,TMEM245,TMEM246,TMEM38B,TMOD1,TRIM14,TSTD2,TXN,TXNDC8,UGCG,XPA,ZNF189,ZNF462,ZNF483"
TCGA.AA.A01K.01A	9	100085068	117835841	1110	0.0781	NEUTRAL	NA	123	Too-Many
TCGA.CK.5914.01A	9	100128830	100138998	7	-0.2303	NEUTRAL	NA	1	CCDC180
TCGA.AG.3909.01A	9	100132162	100201507	10	-0.062	NEUTRAL	NA	2	"CCDC180,TDRD7"
TCGA.AA.A00N.01A	9	100132162	100413537	53	-0.3973	NEUTRAL	NA	5	"CCDC180,NCBP1,TDRD7,TMOD1,TSTD2"
TCGA.AD.6889	9	100162416	101730235	612	-0.0732	NEUTRAL	NA	17	"ANKS6,ANP32B,C9orf156,COL15A1,CORO2A,FOXE1,GABBR2,GALNT12,HEMGN,NANS,NCBP1,TBC1D2,TDRD7,TMOD1,TRIM14,TSTD2,XPA"
TCGA.QL.A97D	9	100162416	124042943	9355	0.1738	NEUTRAL	NA	138	Too-Many
TCGA.AA.3696	9	100162416	141071474	13734	0.0059	NEUTRAL	NA	409	Too-Many
TCGA.G5.6235	9	100162416	141071474	13724	-0.0403	NEUTRAL	NA	409	Too-Many
TCGA.AG.4009.01A	9	100190711	100331139	23	-0.3281	NEUTRAL	NA	2	"TDRD7,TMOD1"
TCGA.AG.3909.01A	9	100203933	100237607	7	0.2923	NEUTRAL	NA	1	TDRD7
TCGA.A6.3808.01A	9	100232799	112969617	655	0.3612	NEUTRAL	NA	72	"ABCA1,ACTL7A,ACTL7B,AKAP2,ALDOB,ALG2,ANKS6,ANP32B,BAAT,C9orf152,C9orf156,COL15A1,CORO2A,CTNNAL1,CYLC2,EPB41L4B,ERP44,FAM206A,FKTN,FOXE1,FRRS1L,FSD1L,GABBR2,GALNT12,GRIN3A,HEMGN,IKBKAP,INVS,KLF4,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NANS,NCBP1,NIPSNAP3A,NIPSNAP3B,NR4A3,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PALM2,PALM2-AKAP2,PPP3R2,PTPN3,RAD23B,RNF20,SEC61B,SLC44A1,SMC2,STX17,TAL2,TBC1D2,TDRD7,TEX10,TGFBR1,TMEFF1,TMEM245,TMEM246,TMEM38B,TMOD1,TRIM14,TSTD2,XPA,ZNF189,ZNF462"
TCGA.AG.3909.01A	9	100240672	100257918	5	-0.3045	NEUTRAL	NA	1	TDRD7
TCGA.CK.5914.01A	9	100245102	100991234	102	0.063	NEUTRAL	NA	13	"ANP32B,C9orf156,CORO2A,FOXE1,HEMGN,NANS,NCBP1,TBC1D2,TDRD7,TMOD1,TRIM14,TSTD2,XPA"
TCGA.AG.3909.01A	9	100326279	100616927	44	-0.3292	NEUTRAL	NA	5	"FOXE1,NCBP1,TMOD1,TSTD2,XPA"
TCGA.AG.4009.01A	9	100353581	100823013	55	0.0356	NEUTRAL	NA	9	"ANP32B,C9orf156,FOXE1,HEMGN,NANS,NCBP1,TMOD1,TSTD2,XPA"
TCGA.AA.A010.01A	9	100361887	100379991	10	0.1439	NEUTRAL	NA	2	"TMOD1,TSTD2"
TCGA.AG.3906.01A	9	100361887	100823013	55	-0.0805	NEUTRAL	NA	9	"ANP32B,C9orf156,FOXE1,HEMGN,NANS,NCBP1,TMOD1,TSTD2,XPA"
TCGA.AA.3509.01A	9	100407851	112003905	568	0.1616	NEUTRAL	NA	64	"ABCA1,ACTL7A,ACTL7B,ALDOB,ALG2,ANKS6,ANP32B,BAAT,C9orf156,COL15A1,CORO2A,CTNNAL1,CYLC2,EPB41L4B,ERP44,FAM206A,FKTN,FOXE1,FRRS1L,FSD1L,GABBR2,GALNT12,GRIN3A,HEMGN,IKBKAP,INVS,KLF4,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NANS,NCBP1,NIPSNAP3A,NIPSNAP3B,NR4A3,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PPP3R2,RAD23B,RNF20,SEC61B,SLC44A1,SMC2,STX17,TAL2,TBC1D2,TEX10,TGFBR1,TMEFF1,TMEM245,TMEM246,TMEM38B,TRIM14,XPA,ZNF189,ZNF462"
TCGA.AZ.4684.01A	9	100413537	102690994	181	0.0495	NEUTRAL	NA	19	"ALG2,ANKS6,ANP32B,C9orf156,COL15A1,CORO2A,FOXE1,GABBR2,GALNT12,HEMGN,NANS,NCBP1,NR4A3,SEC61B,STX17,TBC1D2,TGFBR1,TRIM14,XPA"
TCGA.AA.A010.01A	9	100425186	100455884	11	0.3531	NEUTRAL	NA	2	"NCBP1,XPA"
TCGA.AA.A00N.01A	9	100437669	100991234	59	-0.3708	NEUTRAL	NA	9	"ANP32B,C9orf156,CORO2A,FOXE1,HEMGN,NANS,TBC1D2,TRIM14,XPA"
TCGA.AA.3850	9	100439553	101834339	590	0.34155	NEUTRAL	NA	13	"ANKS6,ANP32B,C9orf156,COL15A1,CORO2A,FOXE1,GABBR2,GALNT12,HEMGN,NANS,TBC1D2,TRIM14,XPA"
TCGA.D5.6535	9	100497749	100919317	115	-0.0492	NEUTRAL	NA	7	"ANP32B,C9orf156,CORO2A,FOXE1,HEMGN,NANS,TRIM14"
TCGA.AA.3549	9	100657118	100821623	26	0.0584	NEUTRAL	NA	4	"ANP32B,C9orf156,HEMGN,NANS"
TCGA.AG.3909.01A	9	100666967	100819042	14	0.213	NEUTRAL	NA	4	"ANP32B,C9orf156,HEMGN,NANS"
TCGA.AA.A010.01A	9	100745765	100872132	19	-0.4906	NEUTRAL	NA	3	"ANP32B,NANS,TRIM14"
TCGA.DM.A28A	9	100784049	100961092	61	0.2383	NEUTRAL	NA	3	"CORO2A,NANS,TRIM14"
TCGA.AG.A01W.01A	9	100798988	100871729	31	-0.4227	NEUTRAL	NA	2	"NANS,TRIM14"
TCGA.AA.A01Q.01A	9	100823013	100975359	30	-0.3428	NEUTRAL	NA	4	"CORO2A,NANS,TBC1D2,TRIM14"
TCGA.AG.3909.01A	9	100823013	101056057	38	-0.4403	NEUTRAL	NA	5	"CORO2A,GABBR2,NANS,TBC1D2,TRIM14"
TCGA.D5.6538	9	100843659	141071474	13535	-0.032	NEUTRAL	NA	400	Too-Many
TCGA.AG.4009.01A	9	100857128	102068531	119	0.1639	NEUTRAL	NA	10	"ALG2,ANKS6,COL15A1,CORO2A,GABBR2,GALNT12,SEC61B,TBC1D2,TGFBR1,TRIM14"
TCGA.AG.3906.01A	9	100888794	102068531	113	0.0598	NEUTRAL	NA	9	"ALG2,ANKS6,COL15A1,CORO2A,GABBR2,GALNT12,SEC61B,TBC1D2,TGFBR1"
TCGA.D5.6535	9	100927761	104045760	994	-0.0632	NEUTRAL	NA	19	"ALG2,ANKS6,COL15A1,CORO2A,ERP44,GABBR2,GALNT12,INVS,LPPR1,MSANTD3,MSANTD3-TMEFF1,MURC,NR4A3,SEC61B,STX17,TBC1D2,TEX10,TGFBR1,TMEFF1"
TCGA.AG.A01W.01A	9	100930931	126217399	1486	0.0316	NEUTRAL	NA	159	Too-Many
TCGA.AA.A01Q.01A	9	100983065	104499524	210	0.1312	NEUTRAL	NA	26	"ALDOB,ALG2,ANKS6,BAAT,COL15A1,ERP44,GABBR2,GALNT12,GRIN3A,INVS,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NR4A3,PPP3R2,RNF20,SEC61B,STX17,TBC1D2,TEX10,TGFBR1,TMEFF1,TMEM246,ZNF189"
TCGA.AG.3883	9	101065211	112244320	4207	-0.305	NEUTRAL	NA	55	"ABCA1,ACTL7A,ACTL7B,ALDOB,ALG2,ANKS6,BAAT,COL15A1,CTNNAL1,CYLC2,EPB41L4B,ERP44,FAM206A,FKTN,FRRS1L,FSD1L,GABBR2,GALNT12,GRIN3A,IKBKAP,INVS,KLF4,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NIPSNAP3A,NIPSNAP3B,NR4A3,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PPP3R2,PTPN3,RAD23B,RNF20,SEC61B,SLC44A1,SMC2,STX17,TAL2,TEX10,TGFBR1,TMEFF1,TMEM245,TMEM246,TMEM38B,ZNF189,ZNF462"
TCGA.AA.A010.01A	9	101470662	101536149	9	-0.3545	NEUTRAL	NA	2	"ANKS6,GABBR2"
TCGA.AA.A00N.01A	9	101539615	101765696	24	-0.2695	NEUTRAL	NA	3	"ANKS6,COL15A1,GALNT12"
TCGA.AG.3909.01A	9	101539615	101765696	23	-0.1019	NEUTRAL	NA	3	"ANKS6,COL15A1,GALNT12"
TCGA.CK.5914.01A	9	101539615	101765696	24	0.0602	NEUTRAL	NA	3	"ANKS6,COL15A1,GALNT12"
TCGA.AA.A02Y	9	101566769	141071474	13185	0.0146	NEUTRAL	NA	394	Too-Many
TCGA.AA.3549	9	101571654	141071474	13196	0.0356	NEUTRAL	NA	394	Too-Many
TCGA.AA.A010.01A	9	101602242	101611222	4	0.129	NEUTRAL	NA	1	GALNT12
TCGA.DM.A28A	9	101665351	105846481	1313	0.1991	NEUTRAL	NA	23	"ALDOB,ALG2,BAAT,COL15A1,CYLC2,ERP44,GRIN3A,INVS,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NR4A3,PPP3R2,RNF20,SEC61B,STX17,TEX10,TGFBR1,TMEFF1,TMEM246,ZNF189"
TCGA.AD.6889	9	101743316	141071474	13095	-0.0353	NEUTRAL	NA	393	Too-Many
TCGA.AA.A01I.01A	9	101802724	131140222	1793	-0.1504	NEUTRAL	NA	211	Too-Many
TCGA.AA.A010.01A	9	101822104	101829124	4	0.3013	NEUTRAL	NA	1	COL15A1
TCGA.AA.3850	9	101836785	103577794	367	-0.02985	NEUTRAL	NA	12	"ALG2,ERP44,INVS,MSANTD3,MSANTD3-TMEFF1,MURC,NR4A3,SEC61B,STX17,TEX10,TGFBR1,TMEFF1"
TCGA.AG.3909.01A	9	101891090	101911450	8	0.338	NEUTRAL	NA	1	TGFBR1
TCGA.AG.A00C.01A	9	101980194	102690994	16	0.3323	NEUTRAL	NA	4	"ALG2,NR4A3,SEC61B,STX17"
TCGA.AG.3909.01A	9	101980194	102888628	35	-0.2284	NEUTRAL	NA	6	"ALG2,ERP44,INVS,NR4A3,SEC61B,STX17"
TCGA.CK.5914.01A	9	101980194	102988305	36	-0.0201	NEUTRAL	NA	6	"ALG2,ERP44,INVS,NR4A3,SEC61B,STX17"
TCGA.AA.3982	9	102176402	104385799	560	-0.1217	NEUTRAL	NA	18	"ALDOB,BAAT,ERP44,GRIN3A,INVS,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NR4A3,PPP3R2,RNF20,STX17,TEX10,TMEFF1,TMEM246,ZNF189"
TCGA.AA.3941	9	102216254	104386021	558	-0.1199	NEUTRAL	NA	18	"ALDOB,BAAT,ERP44,GRIN3A,INVS,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NR4A3,PPP3R2,RNF20,STX17,TEX10,TMEFF1,TMEM246,ZNF189"
TCGA.AG.3906.01A	9	102606879	107607703	203	-0.0645	NEUTRAL	NA	31	"ABCA1,ALDOB,BAAT,CYLC2,ERP44,GRIN3A,INVS,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NIPSNAP3A,NIPSNAP3B,NR4A3,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PPP3R2,RNF20,SMC2,STX17,TEX10,TMEFF1,TMEM246,ZNF189"
TCGA.AG.4009.01A	9	102690994	102784283	13	0.1011	NEUTRAL	NA	2	"ERP44,STX17"
TCGA.AG.A00C.01A	9	102713330	103088566	39	-0.1439	NEUTRAL	NA	4	"ERP44,INVS,STX17,TEX10"
TCGA.A6.2679	9	102877120	129156009	9919	-0.3133	NEUTRAL	NA	165	Too-Many
TCGA.AA.A00F.01A	9	102988305	103092174	24	-0.2615	NEUTRAL	NA	2	"INVS,TEX10"
TCGA.AG.3909.01A	9	102988305	103092174	24	0.3622	NEUTRAL	NA	2	"INVS,TEX10"
TCGA.AG.4009.01A	9	102988305	103111414	28	0.0286	NEUTRAL	NA	2	"INVS,TEX10"
TCGA.AA.A00N.01A	9	103072525	103092174	7	-0.0154	NEUTRAL	NA	1	TEX10
TCGA.DM.A1D9	9	103076160	141071474	12819	0.0123	NEUTRAL	NA	385	Too-Many
TCGA.AA.A00F.01A	9	103102488	103275506	9	0.2102	NEUTRAL	NA	4	"MSANTD3,MSANTD3-TMEFF1,TEX10,TMEFF1"
TCGA.AG.3909.01A	9	103204174	105766929	71	0.2472	NEUTRAL	NA	14	"ALDOB,BAAT,CYLC2,GRIN3A,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,PPP3R2,RNF20,TMEFF1,TMEM246,ZNF189"
TCGA.AA.A00N.01A	9	103235780	103348038	12	0.0487	NEUTRAL	NA	3	"MSANTD3-TMEFF1,MURC,TMEFF1"
TCGA.AG.A00C.01A	9	103271240	105766929	67	-0.2312	NEUTRAL	NA	13	"ALDOB,BAAT,CYLC2,GRIN3A,LPPR1,MRPL50,MSANTD3-TMEFF1,MURC,PPP3R2,RNF20,TMEFF1,TMEM246,ZNF189"
TCGA.AG.4009.01A	9	103271240	107602523	149	0.1051	NEUTRAL	NA	25	"ABCA1,ALDOB,BAAT,CYLC2,GRIN3A,LPPR1,MRPL50,MSANTD3-TMEFF1,MURC,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PPP3R2,RNF20,SMC2,TMEFF1,TMEM246,ZNF189"
TCGA.AA.A00F.01A	9	103278943	105766929	65	-0.1665	NEUTRAL	NA	13	"ALDOB,BAAT,CYLC2,GRIN3A,LPPR1,MRPL50,MSANTD3-TMEFF1,MURC,PPP3R2,RNF20,TMEFF1,TMEM246,ZNF189"
TCGA.AA.3543	9	103370531	141071474	12767	0.0081	NEUTRAL	NA	380	Too-Many
TCGA.AG.3890	9	103774858	104236773	188	-0.1549	NEUTRAL	NA	6	"ALDOB,BAAT,LPPR1,MRPL50,TMEM246,ZNF189"
TCGA.D5.6535	9	104059876	104163005	39	-0.4043	NEUTRAL	NA	4	"BAAT,LPPR1,MRPL50,ZNF189"
TCGA.AG.3891.01A	9	104124718	104314675	29	-0.4646	NEUTRAL	NA	6	"ALDOB,BAAT,MRPL50,RNF20,TMEM246,ZNF189"
TCGA.D5.6535	9	104163788	114013663	4055	-0.0599	NEUTRAL	NA	45	"ABCA1,ACTL7A,ACTL7B,AKAP2,ALDOB,C9orf152,CTNNAL1,CYLC2,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,GRIN3A,IKBKAP,KLF4,LPAR1,MUSK,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PALM2,PALM2-AKAP2,PPP3R2,PTPN3,RAD23B,RNF20,SLC44A1,SMC2,SVEP1,TAL2,TMEM245,TMEM246,TMEM38B,TXN,TXNDC8,ZNF189,ZNF462"
TCGA.AG.3890	9	104238141	141071474	12396	0.1384	NEUTRAL	NA	375	Too-Many
TCGA.AG.3891.01A	9	104314907	114348247	445	-0.1119	NEUTRAL	NA	46	"ABCA1,ACTL7A,ACTL7B,AKAP2,C9orf152,CTNNAL1,CYLC2,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,GRIN3A,IKBKAP,KIAA0368,KLF4,LPAR1,MUSK,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,OR2K2,PALM2,PALM2-AKAP2,PPP3R2,PTGR1,PTPN3,RAD23B,RNF20,SLC44A1,SMC2,SVEP1,TAL2,TMEM245,TMEM38B,TXN,TXNDC8,ZNF462,ZNF483"
TCGA.AA.3982	9	104385812	107431205	1129	-0.4866	NEUTRAL	NA	10	"CYLC2,GRIN3A,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13F1,SMC2"
TCGA.AA.3811	9	104386021	107421823	1125	-0.4882	NEUTRAL	NA	10	"CYLC2,GRIN3A,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13F1,SMC2"
TCGA.AA.3844	9	104391743	107529047	1160	0.021	NEUTRAL	NA	13	"CYLC2,GRIN3A,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.AA.3867	9	104392142	107234217	1030	-0.3925	NEUTRAL	NA	3	"CYLC2,GRIN3A,SMC2"
TCGA.AA.3956	9	104763564	113300205	3507	-0.0059	NEUTRAL	NA	37	"ABCA1,ACTL7A,ACTL7B,AKAP2,C9orf152,CTNNAL1,CYLC2,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,IKBKAP,KLF4,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PALM2,PALM2-AKAP2,PTPN3,RAD23B,SLC44A1,SMC2,SVEP1,TAL2,TMEM245,TMEM38B,TXN,TXNDC8,ZNF462"
TCGA.AA.A01Q.01A	9	105757573	106885372	19	-0.2357	NEUTRAL	NA	2	"CYLC2,SMC2"
TCGA.CM.4747	9	105780272	141071474	11862	-0.0286	NEUTRAL	NA	371	Too-Many
TCGA.AA.3952	9	105831340	118693648	5208	0.0402	NEUTRAL	NA	84	"ABCA1,ACTL7A,ACTL7B,AKAP2,AKNA,ALAD,AMBP,ATP6V1G1,BSPRY,C9orf152,C9orf43,C9orf84,C9orf91,CDC26,COL27A1,CTNNAL1,DEC1,DFNB31,DNAJC25,DNAJC25-GNG10,EPB41L4B,FAM206A,FKBP15,FKTN,FRRS1L,FSD1L,GNG10,HDHD3,HSDL2,IKBKAP,INIP,KIAA0368,KIAA1958,KIF12,KLF4,LOC100505478,LPAR1,MUSK,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,OR2K2,ORM1,ORM2,PALM2,PALM2-AKAP2,POLE3,PRPF4,PTBP3,PTGR1,PTPN3,RAD23B,RGS3,RNF183,SLC31A1,SLC31A2,SLC44A1,SLC46A2,SMC2,SNX30,SUSD1,SVEP1,TAL2,TMEM245,TMEM38B,TNC,TNFSF15,TNFSF8,TXN,TXNDC8,UGCG,WDR31,ZFP37,ZNF462,ZNF483,ZNF618,ZNF883"
TCGA.DM.A28A	9	105848808	107460070	574	-0.2248	NEUTRAL	NA	9	"OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.AA.3864	9	106698336	113300205	2808	0.0599	NEUTRAL	NA	36	"ABCA1,ACTL7A,ACTL7B,AKAP2,C9orf152,CTNNAL1,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,IKBKAP,KLF4,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PALM2,PALM2-AKAP2,PTPN3,RAD23B,SLC44A1,SMC2,SVEP1,TAL2,TMEM245,TMEM38B,TXN,TXNDC8,ZNF462"
TCGA.AA.3989	9	106698336	113300205	2812	0.0648	NEUTRAL	NA	36	"ABCA1,ACTL7A,ACTL7B,AKAP2,C9orf152,CTNNAL1,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,IKBKAP,KLF4,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PALM2,PALM2-AKAP2,PTPN3,RAD23B,SLC44A1,SMC2,SVEP1,TAL2,TMEM245,TMEM38B,TXN,TXNDC8,ZNF462"
TCGA.AA.A00F.01A	9	106857647	106864668	7	0.2354	NEUTRAL	NA	1	SMC2
TCGA.AG.A00C.01A	9	106857647	106878442	12	0.2881	NEUTRAL	NA	1	SMC2
TCGA.AG.3909.01A	9	106873860	106882269	7	-0.1496	NEUTRAL	NA	1	SMC2
TCGA.AA.A00F.01A	9	106873860	107510017	26	-0.1551	NEUTRAL	NA	10	"NIPSNAP3A,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.AA.A00N.01A	9	106873860	107510017	26	0.3546	NEUTRAL	NA	10	"NIPSNAP3A,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.AG.A00C.01A	9	106880410	107456726	20	-0.207	NEUTRAL	NA	9	"OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.AG.3909.01A	9	106885372	107510017	19	0.3223	NEUTRAL	NA	10	"NIPSNAP3A,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.AA.A01Q.01A	9	106887142	107510017	18	0.1419	NEUTRAL	NA	10	"NIPSNAP3A,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.AZ.6607	9	107028944	141071474	11393	0.0998	NEUTRAL	NA	369	Too-Many
TCGA.AA.3867	9	107236145	141071474	11365	-0.0572	NEUTRAL	NA	369	Too-Many
TCGA.A6.2681	9	107335692	141071474	11307	0.0414	NEUTRAL	NA	365	Too-Many
TCGA.DC.5869	9	107366118	141071474	11253	-0.0751	NEUTRAL	NA	364	Too-Many
TCGA.AY.A71X	9	107371879	112823817	2312	-0.0088	NEUTRAL	NA	25	"ABCA1,ACTL7A,ACTL7B,AKAP2,CTNNAL1,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,IKBKAP,KLF4,NIPSNAP3A,NIPSNAP3B,OR13C9,OR13D1,PALM2,PALM2-AKAP2,PTPN3,RAD23B,SLC44A1,TAL2,TMEM245,TMEM38B,ZNF462"
TCGA.AA.3850	9	107419240	107529047	41	-0.06165	NEUTRAL	NA	3	"NIPSNAP3A,NIPSNAP3B,OR13D1"
TCGA.AA.3811	9	107428044	117898170	4308	-0.012	NEUTRAL	NA	75	"ABCA1,ACTL7A,ACTL7B,AKAP2,AKNA,ALAD,AMBP,ATP6V1G1,BSPRY,C9orf152,C9orf43,C9orf84,C9orf91,CDC26,COL27A1,CTNNAL1,DFNB31,DNAJC25,DNAJC25-GNG10,EPB41L4B,FAM206A,FKBP15,FKTN,FRRS1L,FSD1L,GNG10,HDHD3,HSDL2,IKBKAP,INIP,KIAA0368,KIAA1958,KIF12,KLF4,LOC100505478,LPAR1,MUSK,NIPSNAP3A,NIPSNAP3B,OR13D1,OR2K2,ORM1,ORM2,PALM2,PALM2-AKAP2,POLE3,PRPF4,PTBP3,PTGR1,PTPN3,RAD23B,RGS3,RNF183,SLC31A1,SLC31A2,SLC44A1,SLC46A2,SNX30,SUSD1,SVEP1,TAL2,TMEM245,TMEM38B,TNC,TNFSF15,TNFSF8,TXN,TXNDC8,UGCG,WDR31,ZFP37,ZNF462,ZNF483,ZNF618,ZNF883"
TCGA.AA.3982	9	107439674	107463972	16	0.2051	NEUTRAL	NA	1	OR13D1
TCGA.DM.A28A	9	107462427	115682674	3368	0.2558	NEUTRAL	NA	45	"ABCA1,ACTL7A,ACTL7B,AKAP2,C9orf152,C9orf84,CTNNAL1,DNAJC25,DNAJC25-GNG10,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,GNG10,HSDL2,IKBKAP,INIP,KIAA0368,KIAA1958,KLF4,LPAR1,MUSK,NIPSNAP3A,NIPSNAP3B,OR2K2,PALM2,PALM2-AKAP2,PTBP3,PTGR1,PTPN3,RAD23B,SLC44A1,SLC46A2,SNX30,SUSD1,SVEP1,TAL2,TMEM245,TMEM38B,TXN,TXNDC8,UGCG,ZNF462,ZNF483"
TCGA.AA.3941	9	107503368	107669731	86	0.2455	NEUTRAL	NA	3	"ABCA1,NIPSNAP3A,NIPSNAP3B"
TCGA.AA.3982	9	107503368	108671467	433	0.1431	NEUTRAL	NA	8	"ABCA1,FKTN,FSD1L,NIPSNAP3A,NIPSNAP3B,SLC44A1,TAL2,TMEM38B"
TCGA.AA.A00F.01A	9	107513199	107535048	9	0.2608	NEUTRAL	NA	2	"NIPSNAP3A,NIPSNAP3B"
TCGA.AA.A01Q.01A	9	107513199	107535048	9	-0.2032	NEUTRAL	NA	2	"NIPSNAP3A,NIPSNAP3B"
TCGA.AG.A00C.01A	9	107513199	107549107	12	0.2131	NEUTRAL	NA	3	"ABCA1,NIPSNAP3A,NIPSNAP3B"
TCGA.AA.A00N.01A	9	107546569	107566858	18	0.21	NEUTRAL	NA	1	ABCA1
TCGA.AA.A010.01A	9	107546569	107566858	18	-0.2016	NEUTRAL	NA	1	ABCA1
TCGA.AG.3909.01A	9	107546569	107566858	18	0.2523	NEUTRAL	NA	1	ABCA1
TCGA.AA.A00F.01A	9	107546569	107607703	41	-0.1428	NEUTRAL	NA	1	ABCA1
TCGA.AA.A01Q.01A	9	107546569	107607703	41	0.2027	NEUTRAL	NA	1	ABCA1
TCGA.AZ.4684.01A	9	107546569	108061468	49	0.0112	NEUTRAL	NA	2	"ABCA1,SLC44A1"
TCGA.AG.A00C.01A	9	107550161	107607703	37	-0.2094	NEUTRAL	NA	1	ABCA1
TCGA.AA.A010.01A	9	107584747	107602523	11	-0.1495	NEUTRAL	NA	1	ABCA1
TCGA.AA.A00N.01A	9	107593916	107602523	5	0.2187	NEUTRAL	NA	1	ABCA1
TCGA.AG.3909.01A	9	107607703	108397304	33	0.116	NEUTRAL	NA	4	"ABCA1,FKTN,FSD1L,SLC44A1"
TCGA.CK.5914.01A	9	107617948	109697757	63	0.0848	NEUTRAL	NA	7	"ABCA1,FKTN,FSD1L,SLC44A1,TAL2,TMEM38B,ZNF462"
TCGA.AA.A00F.01A	9	107620773	107646661	4	0.3631	NEUTRAL	NA	1	ABCA1
TCGA.AG.4009.01A	9	107651330	110093876	55	0.0579	NEUTRAL	NA	8	"ABCA1,FKTN,FSD1L,RAD23B,SLC44A1,TAL2,TMEM38B,ZNF462"
TCGA.AA.A00F.01A	9	107651330	111681045	95	-0.075	NEUTRAL	NA	12	"ABCA1,ACTL7A,ACTL7B,FKTN,FSD1L,IKBKAP,KLF4,RAD23B,SLC44A1,TAL2,TMEM38B,ZNF462"
TCGA.AA.A010.01A	9	107665831	108110589	5	-0.2389	NEUTRAL	NA	2	"ABCA1,SLC44A1"
TCGA.AG.3906.01A	9	107665831	114371291	337	-0.0354	NEUTRAL	NA	31	"ABCA1,ACTL7A,ACTL7B,AKAP2,C9orf152,CTNNAL1,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,IKBKAP,KIAA0368,KLF4,LPAR1,MUSK,OR2K2,PALM2,PALM2-AKAP2,PTGR1,PTPN3,RAD23B,SLC44A1,SVEP1,TAL2,TMEM245,TMEM38B,TXN,TXNDC8,ZNF462,ZNF483"
TCGA.AA.A01Q.01A	9	107665831	116247849	356	0.1398	NEUTRAL	NA	58	"ABCA1,ACTL7A,ACTL7B,AKAP2,ALAD,BSPRY,C9orf152,C9orf43,C9orf84,CDC26,CTNNAL1,DNAJC25,DNAJC25-GNG10,EPB41L4B,FAM206A,FKBP15,FKTN,FRRS1L,FSD1L,GNG10,HDHD3,HSDL2,IKBKAP,INIP,KIAA0368,KIAA1958,KLF4,LPAR1,MUSK,OR2K2,PALM2,PALM2-AKAP2,POLE3,PRPF4,PTBP3,PTGR1,PTPN3,RAD23B,RGS3,RNF183,SLC31A1,SLC31A2,SLC44A1,SLC46A2,SNX30,SUSD1,SVEP1,TAL2,TMEM245,TMEM38B,TXN,TXNDC8,UGCG,WDR31,ZFP37,ZNF462,ZNF483,ZNF883"
TCGA.AA.3850	9	108054502	108293041	61	0.07955	NEUTRAL	NA	2	"FSD1L,SLC44A1"
TCGA.AG.A00C.01A	9	108061468	110093876	54	-0.1754	NEUTRAL	NA	7	"FKTN,FSD1L,RAD23B,SLC44A1,TAL2,TMEM38B,ZNF462"
TCGA.AA.A010.01A	9	108145367	108246612	12	-0.0548	NEUTRAL	NA	2	"FSD1L,SLC44A1"
TCGA.AA.3941	9	108250835	108626918	94	-0.024	NEUTRAL	NA	4	"FKTN,FSD1L,TAL2,TMEM38B"
TCGA.AA.3850	9	108299553	108894812	177	-0.10185	NEUTRAL	NA	4	"FKTN,FSD1L,TAL2,TMEM38B"
TCGA.AA.A010.01A	9	108337272	109746440	29	0.1939	NEUTRAL	NA	4	"FKTN,TAL2,TMEM38B,ZNF462"
TCGA.AA.A00N.01A	9	108397304	108536129	10	-0.1544	NEUTRAL	NA	3	"FKTN,TAL2,TMEM38B"
TCGA.AG.3909.01A	9	108510325	109701158	9	0.0975	NEUTRAL	NA	2	"TMEM38B,ZNF462"
TCGA.AA.3941	9	108627214	108671467	22	0.3531	NEUTRAL	NA	0	None
TCGA.AA.3982	9	108674391	108897516	72	-0.2814	NEUTRAL	NA	0	None
TCGA.AA.3844	9	108674391	109802695	365	0.1375	NEUTRAL	NA	1	ZNF462
TCGA.AA.3941	9	108674391	109802695	365	-0.4473	NEUTRAL	NA	1	ZNF462
TCGA.AA.3982	9	108904104	109470762	181	-0.2352	NEUTRAL	NA	0	None
TCGA.AA.3850	9	109141754	109475886	119	-0.16715	NEUTRAL	NA	0	None
TCGA.CM.4752	9	109270731	141071474	10634	-0.2543	NEUTRAL	NA	353	Too-Many
TCGA.AA.3850	9	109481440	109802695	96	-0.49345	NEUTRAL	NA	1	ZNF462
TCGA.AA.3982	9	109482026	109786164	92	-0.3597	NEUTRAL	NA	1	ZNF462
TCGA.AZ.4684.01A	9	109685635	115024693	396	0.0752	NEUTRAL	NA	32	"ACTL7A,ACTL7B,AKAP2,C9orf152,C9orf84,CTNNAL1,DNAJC25,DNAJC25-GNG10,EPB41L4B,FAM206A,FRRS1L,GNG10,IKBKAP,KIAA0368,KLF4,LPAR1,MUSK,OR2K2,PALM2,PALM2-AKAP2,PTBP3,PTGR1,PTPN3,RAD23B,SUSD1,SVEP1,TMEM245,TXN,TXNDC8,UGCG,ZNF462,ZNF483"
TCGA.AA.A00N.01A	9	109773084	111681045	49	-0.1166	NEUTRAL	NA	6	"ACTL7A,ACTL7B,IKBKAP,KLF4,RAD23B,ZNF462"
TCGA.AA.3982	9	109798624	113296045	1717	0.0914	NEUTRAL	NA	18	"ACTL7A,ACTL7B,AKAP2,C9orf152,CTNNAL1,EPB41L4B,FAM206A,FRRS1L,IKBKAP,KLF4,PALM2,PALM2-AKAP2,PTPN3,RAD23B,SVEP1,TMEM245,TXN,TXNDC8"
TCGA.AA.3941	9	109803382	110002057	92	0.1331	NEUTRAL	NA	0	None
TCGA.AA.3850	9	109815351	109983941	70	0.04945	NEUTRAL	NA	0	None
TCGA.AA.3844	9	109924725	109926562	5	-0.4154	NEUTRAL	NA	0	None
TCGA.AA.3850	9	109986826	110039633	20	-0.18525	NEUTRAL	NA	0	None
TCGA.AA.3844	9	109998562	110000353	5	-0.4574	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	9	110047106	111685076	49	0.3243	NEUTRAL	NA	5	"ACTL7A,ACTL7B,IKBKAP,KLF4,RAD23B"
TCGA.AG.3909.01A	9	110062376	110093876	10	0.1392	NEUTRAL	NA	1	RAD23B
TCGA.AA.A010.01A	9	110081006	111782666	70	0.3319	NEUTRAL	NA	8	"ACTL7A,ACTL7B,CTNNAL1,FAM206A,IKBKAP,KLF4,RAD23B,TMEM245"
TCGA.AA.3844	9	110083335	110085567	6	-0.1259	NEUTRAL	NA	1	RAD23B
TCGA.AA.3870	9	110184253	141071474	10283	0.0543	NEUTRAL	NA	351	Too-Many
TCGA.AA.3850	9	110362580	110694925	156	0.29055	NEUTRAL	NA	0	None
TCGA.AA.3941	9	110451246	111861344	757	0.1365	NEUTRAL	NA	6	"ACTL7A,ACTL7B,CTNNAL1,FAM206A,IKBKAP,TMEM245"
TCGA.AA.3850	9	110695061	110990322	198	-0.00905	NEUTRAL	NA	0	None
TCGA.AA.3850	9	111024122	111427864	240	-0.03125	NEUTRAL	NA	0	None
TCGA.AA.3850	9	111429923	111662406	141	0.27605	NEUTRAL	NA	3	"ACTL7A,ACTL7B,IKBKAP"
TCGA.G4.6586	9	111504522	141071474	9577	-0.0476	NEUTRAL	NA	350	Too-Many
TCGA.AG.3909.01A	9	111616925	111681045	31	0.1956	NEUTRAL	NA	3	"ACTL7A,ACTL7B,IKBKAP"
TCGA.AG.4009.01A	9	111616925	111853205	70	0.1276	NEUTRAL	NA	6	"ACTL7A,ACTL7B,CTNNAL1,FAM206A,IKBKAP,TMEM245"
TCGA.AG.A00C.01A	9	111618061	111674512	26	-0.084	NEUTRAL	NA	3	"ACTL7A,ACTL7B,IKBKAP"
TCGA.AA.3850	9	111663792	111685128	17	-0.29165	NEUTRAL	NA	1	IKBKAP
TCGA.AG.A00C.01A	9	111678439	111705936	14	0.3454	NEUTRAL	NA	3	"CTNNAL1,FAM206A,IKBKAP"
TCGA.AA.A00F.01A	9	111681485	111714481	14	0.3031	NEUTRAL	NA	3	"CTNNAL1,FAM206A,IKBKAP"
TCGA.AA.3850	9	111687583	111776223	21	0.24585	NEUTRAL	NA	3	"CTNNAL1,FAM206A,IKBKAP"
TCGA.CK.5914.01A	9	111688773	111705936	10	-0.4607	NEUTRAL	NA	3	"CTNNAL1,FAM206A,IKBKAP"
TCGA.AG.3909.01A	9	111710422	111800277	18	0.1729	NEUTRAL	NA	2	"CTNNAL1,TMEM245"
TCGA.AG.A00C.01A	9	111710422	111855704	29	0.0278	NEUTRAL	NA	2	"CTNNAL1,TMEM245"
TCGA.CK.5914.01A	9	111710422	111944952	42	0.3292	NEUTRAL	NA	4	"CTNNAL1,EPB41L4B,FRRS1L,TMEM245"
TCGA.AA.A00N.01A	9	111714481	111812516	20	-0.1923	NEUTRAL	NA	2	"CTNNAL1,TMEM245"
TCGA.AA.A00F.01A	9	111717989	114199179	80	-0.0565	NEUTRAL	NA	16	"AKAP2,C9orf152,CTNNAL1,EPB41L4B,FRRS1L,KIAA0368,LPAR1,MUSK,OR2K2,PALM2,PALM2-AKAP2,PTPN3,SVEP1,TMEM245,TXN,TXNDC8"
TCGA.AA.3850	9	111822507	112354797	216	0.35495	NEUTRAL	NA	4	"EPB41L4B,FRRS1L,PTPN3,TMEM245"
TCGA.AG.3909.01A	9	111849426	111944952	12	-0.0387	NEUTRAL	NA	3	"EPB41L4B,FRRS1L,TMEM245"
TCGA.AG.4009.01A	9	111855704	111956460	13	-0.3604	NEUTRAL	NA	3	"EPB41L4B,FRRS1L,TMEM245"
TCGA.AG.A00C.01A	9	111944952	112969617	60	-0.1461	NEUTRAL	NA	6	"AKAP2,C9orf152,EPB41L4B,PALM2,PALM2-AKAP2,PTPN3"
TCGA.AG.4009.01A	9	111962469	114371291	195	0.1146	NEUTRAL	NA	15	"AKAP2,C9orf152,EPB41L4B,KIAA0368,LPAR1,MUSK,OR2K2,PALM2,PALM2-AKAP2,PTGR1,PTPN3,SVEP1,TXN,TXNDC8,ZNF483"
TCGA.AA.3509.01A	9	112005839	112687254	42	-0.3873	NEUTRAL	NA	4	"EPB41L4B,PALM2,PALM2-AKAP2,PTPN3"
TCGA.AG.3883	9	112244437	115946891	1474	0.0516	NEUTRAL	NA	30	"AKAP2,C9orf152,C9orf84,DNAJC25,DNAJC25-GNG10,FKBP15,GNG10,HSDL2,INIP,KIAA0368,KIAA1958,LPAR1,MUSK,OR2K2,PALM2,PALM2-AKAP2,PTBP3,PTGR1,PTPN3,SLC31A2,SLC46A2,SNX30,SUSD1,SVEP1,TXN,TXNDC8,UGCG,ZFP37,ZNF483,ZNF883"
TCGA.AA.3850	9	112366231	112504270	59	-0.15675	NEUTRAL	NA	1	PALM2
TCGA.AA.3844	9	112379934	112522274	82	0.1604	NEUTRAL	NA	1	PALM2
TCGA.AA.3941	9	112380372	112522274	81	-0.3025	NEUTRAL	NA	1	PALM2
TCGA.SS.A7HO	9	112472082	113137399	346	-0.2859	NEUTRAL	NA	7	"AKAP2,C9orf152,PALM2,PALM2-AKAP2,SVEP1,TXN,TXNDC8"
TCGA.AA.3850	9	112504454	112518085	17	-0.41955	NEUTRAL	NA	1	PALM2
TCGA.AA.3850	9	112524826	113139782	307	0.26175	NEUTRAL	NA	7	"AKAP2,C9orf152,PALM2,PALM2-AKAP2,SVEP1,TXN,TXNDC8"
TCGA.AA.3941	9	112524826	113296045	377	0.284	NEUTRAL	NA	7	"AKAP2,C9orf152,PALM2,PALM2-AKAP2,SVEP1,TXN,TXNDC8"
TCGA.AA.3509.01A	9	112694175	114289627	140	0.0727	NEUTRAL	NA	12	"AKAP2,C9orf152,KIAA0368,LPAR1,MUSK,OR2K2,PALM2,PALM2-AKAP2,SVEP1,TXN,TXNDC8,ZNF483"
TCGA.AY.A71X	9	112831531	132782438	6856	-0.0302	NEUTRAL	NA	192	Too-Many
TCGA.AG.3909.01A	9	113006390	113066683	6	-0.4035	NEUTRAL	NA	2	"TXN,TXNDC8"
TCGA.A6.3808.01A	9	113018615	117109952	482	0.232	NEUTRAL	NA	43	"AKNA,ALAD,AMBP,BSPRY,C9orf43,C9orf84,CDC26,COL27A1,DNAJC25,DNAJC25-GNG10,FKBP15,GNG10,HDHD3,HSDL2,INIP,KIAA0368,KIAA1958,KIF12,LPAR1,MUSK,OR2K2,ORM1,ORM2,POLE3,PRPF4,PTBP3,PTGR1,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,SVEP1,TXN,TXNDC8,UGCG,WDR31,ZFP37,ZNF483,ZNF618,ZNF883"
TCGA.AA.A010.01A	9	113065889	114206611	120	0.1148	NEUTRAL	NA	6	"KIAA0368,LPAR1,MUSK,OR2K2,SVEP1,TXNDC8"
TCGA.AG.3909.01A	9	113088396	113509873	61	0.3524	NEUTRAL	NA	3	"MUSK,SVEP1,TXNDC8"
TCGA.AG.A00C.01A	9	113088396	114204536	116	-0.2149	NEUTRAL	NA	6	"KIAA0368,LPAR1,MUSK,OR2K2,SVEP1,TXNDC8"
TCGA.AA.3967.01A	9	113128731	114195466	107	-0.1842	NEUTRAL	NA	5	"KIAA0368,LPAR1,MUSK,OR2K2,SVEP1"
TCGA.SS.A7HO	9	113138458	113166791	13	0.1437	NEUTRAL	NA	1	SVEP1
TCGA.AA.3850	9	113141814	113974397	362	-0.20345	NEUTRAL	NA	3	"LPAR1,MUSK,SVEP1"
TCGA.SS.A7HO	9	113168343	116407043	1139	0.3476	NEUTRAL	NA	34	"ALAD,BSPRY,C9orf43,C9orf84,CDC26,DNAJC25,DNAJC25-GNG10,FKBP15,GNG10,HDHD3,HSDL2,INIP,KIAA0368,KIAA1958,LPAR1,MUSK,OR2K2,POLE3,PRPF4,PTBP3,PTGR1,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,SVEP1,UGCG,WDR31,ZFP37,ZNF483,ZNF883"
TCGA.AA.3956	9	113302974	141071474	8730	0.0707	NEUTRAL	NA	335	Too-Many
TCGA.AA.3982	9	113303810	113328716	12	-0.2711	NEUTRAL	NA	1	SVEP1
TCGA.AA.3864	9	113303810	113375177	39	0.0875	NEUTRAL	NA	1	SVEP1
TCGA.AA.3977	9	113303810	113375177	39	0.0981	NEUTRAL	NA	1	SVEP1
TCGA.AA.3989	9	113303810	113375177	39	0.1332	NEUTRAL	NA	1	SVEP1
TCGA.AA.3941	9	113304502	113375177	37	0.2593	NEUTRAL	NA	1	SVEP1
TCGA.A6.6140	9	113360944	141071474	8708	-0.0394	NEUTRAL	NA	334	Too-Many
TCGA.AA.3982	9	113371192	113375177	6	-0.4496	NEUTRAL	NA	0	None
TCGA.AA.3941	9	113380771	113409838	17	-0.0395	NEUTRAL	NA	0	None
TCGA.AA.3982	9	113380892	114218946	323	-0.0866	NEUTRAL	NA	4	"KIAA0368,LPAR1,MUSK,OR2K2"
TCGA.AA.3864	9	113383997	118397967	1944	0.1059	NEUTRAL	NA	48	"AKNA,ALAD,AMBP,ATP6V1G1,BSPRY,C9orf43,C9orf84,C9orf91,CDC26,COL27A1,DEC1,DFNB31,DNAJC25,DNAJC25-GNG10,FKBP15,GNG10,HDHD3,HSDL2,INIP,KIAA0368,KIAA1958,KIF12,LOC100505478,LPAR1,MUSK,OR2K2,ORM1,ORM2,POLE3,PRPF4,PTBP3,PTGR1,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,TNC,TNFSF15,TNFSF8,UGCG,WDR31,ZFP37,ZNF483,ZNF618,ZNF883"
TCGA.AA.3989	9	113383997	118401362	1949	0.0849	NEUTRAL	NA	48	"AKNA,ALAD,AMBP,ATP6V1G1,BSPRY,C9orf43,C9orf84,C9orf91,CDC26,COL27A1,DEC1,DFNB31,DNAJC25,DNAJC25-GNG10,FKBP15,GNG10,HDHD3,HSDL2,INIP,KIAA0368,KIAA1958,KIF12,LOC100505478,LPAR1,MUSK,OR2K2,ORM1,ORM2,POLE3,PRPF4,PTBP3,PTGR1,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,TNC,TNFSF15,TNFSF8,UGCG,WDR31,ZFP37,ZNF483,ZNF618,ZNF883"
TCGA.AA.3977	9	113383997	141071474	8668	0.1013	NEUTRAL	NA	334	Too-Many
TCGA.AA.3941	9	113448621	113739637	131	0.0723	NEUTRAL	NA	2	"LPAR1,MUSK"
TCGA.AG.3909.01A	9	113530037	113562618	7	0.0818	NEUTRAL	NA	1	MUSK
TCGA.NH.A6GA	9	113720142	115819869	708	0.0366	NEUTRAL	NA	19	"C9orf84,DNAJC25,DNAJC25-GNG10,GNG10,HSDL2,INIP,KIAA0368,KIAA1958,LPAR1,OR2K2,PTBP3,PTGR1,SLC46A2,SNX30,SUSD1,UGCG,ZFP37,ZNF483,ZNF883"
TCGA.AA.3941	9	113773905	114218946	156	0.1696	NEUTRAL	NA	3	"KIAA0368,LPAR1,OR2K2"
TCGA.AA.3850	9	113980517	114543693	175	0.13985	NEUTRAL	NA	8	"C9orf84,DNAJC25,DNAJC25-GNG10,GNG10,KIAA0368,OR2K2,PTGR1,ZNF483"
TCGA.D5.6535	9	114043820	141071474	8411	-0.1317	NEUTRAL	NA	332	Too-Many
TCGA.G4.6303	9	114145028	141071474	8384	-0.0253	NEUTRAL	NA	331	Too-Many
TCGA.AA.3967.01A	9	114199179	115961073	153	0.2161	NEUTRAL	NA	19	"C9orf84,DNAJC25,DNAJC25-GNG10,FKBP15,GNG10,HSDL2,INIP,KIAA0368,KIAA1958,PTBP3,PTGR1,SLC31A2,SLC46A2,SNX30,SUSD1,UGCG,ZFP37,ZNF483,ZNF883"
TCGA.AA.A00N.01A	9	114213667	114341049	15	-0.4297	NEUTRAL	NA	3	"KIAA0368,PTGR1,ZNF483"
TCGA.AA.3982	9	114231313	114447424	64	0.323	NEUTRAL	NA	6	"DNAJC25,DNAJC25-GNG10,GNG10,KIAA0368,PTGR1,ZNF483"
TCGA.AA.A010.01A	9	114289627	114375205	21	0.1605	NEUTRAL	NA	2	"PTGR1,ZNF483"
TCGA.AA.A00F.01A	9	114289627	114429067	17	0.2987	NEUTRAL	NA	5	"DNAJC25,DNAJC25-GNG10,GNG10,PTGR1,ZNF483"
TCGA.AG.3909.01A	9	114325369	114348247	7	0.1954	NEUTRAL	NA	2	"PTGR1,ZNF483"
TCGA.AA.3941	9	114398629	114400997	4	-0.5141	NEUTRAL	NA	2	"DNAJC25,DNAJC25-GNG10"
TCGA.AA.3509.01A	9	114405076	115030281	71	0.014	NEUTRAL	NA	7	"C9orf84,DNAJC25,DNAJC25-GNG10,GNG10,PTBP3,SUSD1,UGCG"
TCGA.CK.5914.01A	9	114423855	114453813	4	0.1501	NEUTRAL	NA	3	"C9orf84,DNAJC25-GNG10,GNG10"
TCGA.CK.4948.01B	9	114423855	114489864	18	0.3079	NEUTRAL	NA	3	"C9orf84,DNAJC25-GNG10,GNG10"
TCGA.AA.A00N.01A	9	114423855	115630997	103	0.3458	NEUTRAL	NA	10	"C9orf84,DNAJC25-GNG10,GNG10,HSDL2,INIP,KIAA1958,PTBP3,SNX30,SUSD1,UGCG"
TCGA.AG.3906.01A	9	114429067	116091098	159	-0.0268	NEUTRAL	NA	20	"C9orf84,CDC26,DNAJC25-GNG10,FKBP15,GNG10,HSDL2,INIP,KIAA1958,PRPF4,PTBP3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,UGCG,WDR31,ZFP37,ZNF883"
TCGA.AG.3891.01A	9	114429067	117032936	277	-0.0113	NEUTRAL	NA	30	"ALAD,AMBP,BSPRY,C9orf43,C9orf84,CDC26,COL27A1,DNAJC25-GNG10,FKBP15,GNG10,HDHD3,HSDL2,INIP,KIAA1958,KIF12,POLE3,PRPF4,PTBP3,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,UGCG,WDR31,ZFP37,ZNF618,ZNF883"
TCGA.AA.3982	9	114447714	114543693	29	-0.157	NEUTRAL	NA	1	C9orf84
TCGA.AA.3941	9	114448519	114542627	27	-0.0061	NEUTRAL	NA	1	C9orf84
TCGA.AG.3909.01A	9	114449030	115626477	91	0.2719	NEUTRAL	NA	8	"C9orf84,HSDL2,INIP,KIAA1958,PTBP3,SNX30,SUSD1,UGCG"
TCGA.AG.4009.01A	9	114449030	116945272	245	0.1077	NEUTRAL	NA	28	"ALAD,AMBP,BSPRY,C9orf43,C9orf84,CDC26,COL27A1,FKBP15,HDHD3,HSDL2,INIP,KIAA1958,KIF12,POLE3,PRPF4,PTBP3,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,UGCG,WDR31,ZFP37,ZNF618,ZNF883"
TCGA.AA.A00F.01A	9	114449030	117390329	280	-0.0064	NEUTRAL	NA	34	"AKNA,ALAD,AMBP,ATP6V1G1,BSPRY,C9orf43,C9orf84,C9orf91,CDC26,COL27A1,DFNB31,FKBP15,HDHD3,HSDL2,INIP,KIAA1958,KIF12,ORM1,ORM2,POLE3,PRPF4,PTBP3,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,UGCG,WDR31,ZFP37,ZNF618,ZNF883"
TCGA.AG.A00C.01A	9	114453813	116279764	201	0.0032	NEUTRAL	NA	24	"ALAD,BSPRY,C9orf43,C9orf84,CDC26,FKBP15,HDHD3,HSDL2,INIP,KIAA1958,POLE3,PRPF4,PTBP3,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,SUSD1,UGCG,WDR31,ZFP37,ZNF883"
TCGA.AA.A010.01A	9	114468801	114905730	44	0.0187	NEUTRAL	NA	3	"C9orf84,SUSD1,UGCG"
TCGA.AA.3844	9	114474666	114490364	8	-0.1518	NEUTRAL	NA	1	C9orf84
TCGA.AA.3844	9	114490537	114568765	16	0.3611	NEUTRAL	NA	1	C9orf84
TCGA.CK.4948.01B	9	114500548	141109683	3278	-0.0226	NEUTRAL	NA	326	Too-Many
TCGA.CK.5914.01A	9	114508475	114695085	19	0.2664	NEUTRAL	NA	2	"C9orf84,UGCG"
TCGA.AA.3982	9	114548450	115667465	367	0.2906	NEUTRAL	NA	8	"HSDL2,INIP,KIAA1958,PTBP3,SLC46A2,SNX30,SUSD1,UGCG"
TCGA.AA.A010.01A	9	115013158	115221679	19	-0.0364	NEUTRAL	NA	2	"HSDL2,PTBP3"
TCGA.CK.5914.01A	9	115013158	116022504	87	0.2998	NEUTRAL	NA	11	"FKBP15,HSDL2,INIP,KIAA1958,PTBP3,SLC31A1,SLC31A2,SLC46A2,SNX30,ZFP37,ZNF883"
TCGA.AZ.4684.01A	9	115030281	115478663	27	-0.4611	NEUTRAL	NA	4	"HSDL2,INIP,KIAA1958,PTBP3"
TCGA.AA.3831	9	115081497	141071474	8075	0.0109	NEUTRAL	NA	322	Too-Many
TCGA.A6.3810.01A	9	115513235	123800143	498	-0.1991	NEUTRAL	NA	44	"AKNA,ALAD,AMBP,ASTN2,ATP6V1G1,BRINP1,BSPRY,C5,C9orf43,C9orf91,CDC26,CDK5RAP2,COL27A1,DEC1,DFNB31,FBXW2,FKBP15,HDHD3,KIF12,LOC100505478,MEGF9,ORM1,ORM2,PAPPA,PHF19,POLE3,PRPF4,PSMD5,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32,WDR31,ZFP37,ZNF618,ZNF883"
TCGA.AA.3509.01A	9	115513235	127688916	858	-0.001	NEUTRAL	NA	89	"AKNA,ALAD,AMBP,ARPC5L,ASTN2,ATP6V1G1,BRINP1,BSPRY,C5,C9orf43,C9orf91,CDC26,CDK5RAP2,CNTRL,COL27A1,CRB2,DAB2IP,DEC1,DENND1A,DFNB31,FBXW2,FKBP15,GOLGA1,GPR21,GSN,HDHD3,KIF12,LHX2,LHX6,LOC100505478,MEGF9,MORN5,MRRF,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,ORM1,ORM2,PAPPA,PDCL,PHF19,POLE3,PRPF4,PSMB7,PSMD5,PTGS1,RAB14,RABGAP1,RBM18,RC3H2,RGS3,RNF183,RPL35,SLC31A1,SLC31A2,SLC46A2,SNX30,STOM,STRBP,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32,TTLL11,WDR31,WDR38,ZBTB26,ZBTB6,ZFP37,ZNF618,ZNF883"
TCGA.AZ.4684.01A	9	115513235	132638361	1684	-0.0062	NEUTRAL	NA	169	Too-Many
TCGA.AG.3909.01A	9	115630997	115936657	22	-0.3127	NEUTRAL	NA	6	"FKBP15,SLC31A2,SLC46A2,SNX30,ZFP37,ZNF883"
TCGA.AG.3611.01A	9	115641983	115948507	14	-0.1292	NEUTRAL	NA	5	"FKBP15,SLC31A2,SLC46A2,ZFP37,ZNF883"
TCGA.AA.3850	9	115656696	115682715	26	-0.30235	NEUTRAL	NA	0	None
TCGA.AA.3844	9	115668969	115859222	70	0.1549	NEUTRAL	NA	2	"ZFP37,ZNF883"
TCGA.AA.3982	9	115668969	115946891	116	-0.0355	NEUTRAL	NA	4	"FKBP15,SLC31A2,ZFP37,ZNF883"
TCGA.5M.AAT5	9	115676214	128959629	4888	-0.1739	NEUTRAL	NA	94	"AKNA,ALAD,AMBP,ARPC5L,ASTN2,ATP6V1G1,BRINP1,BSPRY,C5,C9orf43,C9orf91,CDC26,CDK5RAP2,CNTRL,COL27A1,CRB2,DAB2IP,DEC1,DENND1A,DFNB31,FBXW2,FKBP15,GAPVD1,GOLGA1,GPR21,GSN,HDHD3,HSPA5,KIF12,LHX2,LHX6,LOC100505478,MAPKAP1,MEGF9,MORN5,MRRF,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,ORM1,ORM2,PAPPA,PBX3,PDCL,PHF19,POLE3,PPP6C,PRPF4,PSMB7,PSMD5,PTGS1,RAB14,RABEPK,RABGAP1,RBM18,RC3H2,RGS3,RNF183,RPL35,SCAI,SLC31A1,SLC31A2,STOM,STRBP,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32,TTLL11,WDR31,WDR38,ZBTB26,ZBTB6,ZFP37,ZNF618,ZNF883"
TCGA.AA.3850	9	115684233	115778269	40	0.23145	NEUTRAL	NA	1	ZNF883
TCGA.AA.3941	9	115687117	115946169	99	0.243	NEUTRAL	NA	4	"FKBP15,SLC31A2,ZFP37,ZNF883"
TCGA.CM.5348	9	115854518	141071474	7837	0.2615	NEUTRAL	NA	314	Too-Many
TCGA.NH.A6GA	9	115885059	141071474	7823	-0.046	NEUTRAL	NA	314	Too-Many
TCGA.AA.A00N.01A	9	115928326	116085051	53	0.3584	NEUTRAL	NA	6	"CDC26,FKBP15,PRPF4,RNF183,SLC31A1,WDR31"
TCGA.AG.3909.01A	9	115938796	116037941	29	0.3106	NEUTRAL	NA	4	"CDC26,FKBP15,PRPF4,SLC31A1"
TCGA.AA.3982	9	115949522	116780991	300	0.2677	NEUTRAL	NA	13	"ALAD,BSPRY,C9orf43,CDC26,FKBP15,HDHD3,POLE3,PRPF4,RGS3,RNF183,SLC31A1,WDR31,ZNF618"
TCGA.AG.3611.01A	9	115950637	116155679	36	0.2959	NEUTRAL	NA	9	"ALAD,BSPRY,CDC26,FKBP15,HDHD3,PRPF4,RNF183,SLC31A1,WDR31"
TCGA.AA.3967.01A	9	115962046	116018379	8	-0.5104	NEUTRAL	NA	2	"FKBP15,SLC31A1"
TCGA.AA.3967.01A	9	116019331	116356153	75	0.3101	NEUTRAL	NA	11	"ALAD,BSPRY,C9orf43,CDC26,HDHD3,POLE3,PRPF4,RGS3,RNF183,SLC31A1,WDR31"
TCGA.CK.5914.01A	9	116028543	116940505	115	0.0236	NEUTRAL	NA	14	"ALAD,AMBP,BSPRY,C9orf43,CDC26,COL27A1,HDHD3,KIF12,POLE3,PRPF4,RGS3,RNF183,WDR31,ZNF618"
TCGA.AG.3909.01A	9	116038805	116245304	52	-0.3608	NEUTRAL	NA	9	"ALAD,BSPRY,C9orf43,HDHD3,POLE3,PRPF4,RGS3,RNF183,WDR31"
TCGA.AG.3906.01A	9	116131897	116859574	77	-0.0923	NEUTRAL	NA	9	"ALAD,AMBP,BSPRY,C9orf43,HDHD3,KIF12,POLE3,RGS3,ZNF618"
TCGA.AG.3883	9	116148315	119549541	1425	0.0311	NEUTRAL	NA	22	"AKNA,ALAD,AMBP,ASTN2,ATP6V1G1,C9orf43,C9orf91,COL27A1,DEC1,DFNB31,KIF12,LOC100505478,ORM1,ORM2,PAPPA,POLE3,RGS3,TNC,TNFSF15,TNFSF8,TRIM32,ZNF618"
TCGA.AA.A010.01A	9	116181330	116224028	12	-0.1927	NEUTRAL	NA	2	"C9orf43,RGS3"
TCGA.AA.A00N.01A	9	116226026	116835154	45	0.2534	NEUTRAL	NA	3	"AMBP,RGS3,ZNF618"
TCGA.AA.A00D.01A	9	116241699	117396000	138	-0.0683	NEUTRAL	NA	11	"AKNA,AMBP,ATP6V1G1,C9orf91,COL27A1,DFNB31,KIF12,ORM1,ORM2,RGS3,ZNF618"
TCGA.AG.3611.01A	9	116241699	124976513	453	0.1308	NEUTRAL	NA	37	"AKNA,AMBP,ASTN2,ATP6V1G1,BRINP1,C5,C9orf91,CDK5RAP2,CNTRL,COL27A1,DAB2IP,DEC1,DFNB31,FBXW2,GSN,KIF12,LHX6,LOC100505478,MEGF9,MORN5,NDUFA8,ORM1,ORM2,PAPPA,PHF19,PSMD5,RAB14,RGS3,STOM,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32,TTLL11,ZNF618"
TCGA.AG.3909.01A	9	116246374	116770564	26	0.1518	NEUTRAL	NA	2	"RGS3,ZNF618"
TCGA.AA.A01Q.01A	9	116257995	117015095	65	-0.3627	NEUTRAL	NA	5	"AMBP,COL27A1,KIF12,RGS3,ZNF618"
TCGA.AG.A00C.01A	9	116285163	116854103	33	-0.3075	NEUTRAL	NA	4	"AMBP,KIF12,RGS3,ZNF618"
TCGA.AA.3967.01A	9	116357142	116810934	15	-0.2947	NEUTRAL	NA	2	"RGS3,ZNF618"
TCGA.SS.A7HO	9	116407226	138410371	7262	0.0124	NEUTRAL	NA	218	Too-Many
TCGA.AA.3941	9	116489193	116652897	51	0.1833	NEUTRAL	NA	1	ZNF618
TCGA.AA.3844	9	116494037	116535409	25	0.1236	NEUTRAL	NA	0	None
TCGA.AA.3850	9	116494037	116689904	65	-0.07255	NEUTRAL	NA	1	ZNF618
TCGA.AG.3909.01A	9	116778336	116929962	26	-0.3087	NEUTRAL	NA	4	"AMBP,COL27A1,KIF12,ZNF618"
TCGA.AA.3982	9	116788413	117557871	357	0.2988	NEUTRAL	NA	12	"AKNA,AMBP,ATP6V1G1,C9orf91,COL27A1,DFNB31,KIF12,LOC100505478,ORM1,ORM2,TNFSF15,ZNF618"
TCGA.AA.3967.01A	9	116822445	136508498	1922	0.2964	NEUTRAL	NA	204	Too-Many
TCGA.AA.A00N.01A	9	116836274	116956623	20	-0.3948	NEUTRAL	NA	3	"AMBP,COL27A1,KIF12"
TCGA.AG.A00C.01A	9	116854607	116956623	11	0.239	NEUTRAL	NA	2	"COL27A1,KIF12"
TCGA.AG.3906.01A	9	116924951	116993284	13	0.3573	NEUTRAL	NA	1	COL27A1
TCGA.AG.A00C.01A	9	116958174	123945126	349	-0.1676	NEUTRAL	NA	26	"AKNA,ASTN2,ATP6V1G1,BRINP1,C5,C9orf91,CDK5RAP2,CNTRL,COL27A1,DEC1,DFNB31,FBXW2,LOC100505478,MEGF9,ORM1,ORM2,PAPPA,PHF19,PSMD5,RAB14,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32"
TCGA.AG.3906.01A	9	116994023	117032936	17	-0.0154	NEUTRAL	NA	1	COL27A1
TCGA.AA.A01Q.01A	9	117020746	117063878	21	0.1605	NEUTRAL	NA	1	COL27A1
TCGA.AA.3862.01A	9	117046932	123875753	302	-0.1217	NEUTRAL	NA	25	"AKNA,ASTN2,ATP6V1G1,BRINP1,C5,C9orf91,CDK5RAP2,CNTRL,COL27A1,DEC1,DFNB31,FBXW2,LOC100505478,MEGF9,ORM1,ORM2,PAPPA,PHF19,PSMD5,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32"
TCGA.AA.A01Q.01A	9	117064278	117187231	40	-0.254	NEUTRAL	NA	5	"AKNA,COL27A1,DFNB31,ORM1,ORM2"
TCGA.AG.3906.01A	9	117066824	117359808	47	0.0556	NEUTRAL	NA	6	"AKNA,ATP6V1G1,COL27A1,DFNB31,ORM1,ORM2"
TCGA.AG.3891.01A	9	117066824	123631953	227	-0.0427	NEUTRAL	NA	22	"AKNA,ASTN2,ATP6V1G1,BRINP1,C9orf91,CDK5RAP2,COL27A1,DEC1,DFNB31,FBXW2,LOC100505478,MEGF9,ORM1,ORM2,PAPPA,PHF19,PSMD5,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AA.3861.01A	9	117069897	123875753	287	-0.1266	NEUTRAL	NA	25	"AKNA,ASTN2,ATP6V1G1,BRINP1,C5,C9orf91,CDK5RAP2,CNTRL,COL27A1,DEC1,DFNB31,FBXW2,LOC100505478,MEGF9,ORM1,ORM2,PAPPA,PHF19,PSMD5,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32"
TCGA.AA.A00N.01A	9	117085916	117113087	17	-0.0576	NEUTRAL	NA	3	"AKNA,ORM1,ORM2"
TCGA.AG.3909.01A	9	117092134	117170184	30	-0.1461	NEUTRAL	NA	3	"AKNA,DFNB31,ORM2"
TCGA.AA.A00Q.01A	9	117093016	117266416	35	-0.2565	NEUTRAL	NA	3	"AKNA,DFNB31,ORM2"
TCGA.AA.3848	9	117098649	141071474	7337	0.0358	NEUTRAL	NA	295	Too-Many
TCGA.AA.3860	9	117101244	141071474	7335	-0.0467	NEUTRAL	NA	295	Too-Many
TCGA.AG.A014.01A	9	117108902	141015884	2103	-0.0753	NEUTRAL	NA	295	Too-Many
TCGA.AA.A01Q.01A	9	117188439	123622314	164	0.2215	NEUTRAL	NA	18	"ASTN2,ATP6V1G1,BRINP1,C9orf91,CDK5RAP2,DEC1,DFNB31,FBXW2,LOC100505478,MEGF9,PAPPA,PHF19,PSMD5,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AG.4009.01A	9	117266416	123628243	178	0.0845	NEUTRAL	NA	18	"ASTN2,ATP6V1G1,BRINP1,C9orf91,CDK5RAP2,DEC1,DFNB31,FBXW2,LOC100505478,MEGF9,PAPPA,PHF19,PSMD5,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AA.A00Q.01A	9	117350058	130258205	684	0.0987	NEUTRAL	NA	82	"ANGPTL2,ARPC5L,ASTN2,ATP6V1G1,BRINP1,C5,C9orf91,CDK5RAP2,CNTRL,CRB2,DAB2IP,DEC1,DENND1A,FBXW2,GAPVD1,GARNL3,GOLGA1,GPR21,GSN,HSPA5,LHX2,LHX6,LMX1B,LOC100505478,LRSAM1,MAPKAP1,MEGF9,MORN5,MRRF,MVB12B,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PAPPA,PBX3,PDCL,PHF19,PPP6C,PSMB7,PSMD5,PTGS1,RAB14,RABEPK,RABGAP1,RALGPS1,RBM18,RC3H2,RPL12,RPL35,SCAI,SLC2A8,STOM,STRBP,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32,TTLL11,WDR38,ZBTB26,ZBTB34,ZBTB43,ZBTB6,ZNF79"
TCGA.AA.A00N.01A	9	117354845	117390329	6	-0.1582	NEUTRAL	NA	2	"ATP6V1G1,C9orf91"
TCGA.AA.A00F.01A	9	117396000	123171377	110	-0.3278	NEUTRAL	NA	12	"ASTN2,BRINP1,C9orf91,CDK5RAP2,DEC1,LOC100505478,PAPPA,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AG.3906.01A	9	117399222	123230129	121	0.007	NEUTRAL	NA	12	"ASTN2,BRINP1,C9orf91,CDK5RAP2,DEC1,LOC100505478,PAPPA,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AA.A00D.01A	9	117399222	123307929	135	-0.4186	NEUTRAL	NA	12	"ASTN2,BRINP1,C9orf91,CDK5RAP2,DEC1,LOC100505478,PAPPA,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AA.A010.01A	9	117405367	123184899	114	0.2915	NEUTRAL	NA	12	"ASTN2,BRINP1,C9orf91,CDK5RAP2,DEC1,LOC100505478,PAPPA,TLR4,TNC,TNFSF15,TNFSF8,TRIM32"
TCGA.AA.3850	9	117483258	117582028	34	-0.02585	NEUTRAL	NA	1	TNFSF15
TCGA.AA.3941	9	117517605	117587091	30	0.1036	NEUTRAL	NA	1	TNFSF15
TCGA.AA.3982	9	117557985	117587091	11	-0.0708	NEUTRAL	NA	1	TNFSF15
TCGA.AA.3941	9	117592637	117856129	126	0.2178	NEUTRAL	NA	2	"TNC,TNFSF8"
TCGA.AA.3982	9	117611912	123457942	2591	-0.2138	NEUTRAL	NA	10	"ASTN2,BRINP1,CDK5RAP2,DEC1,MEGF9,PAPPA,TLR4,TNC,TNFSF8,TRIM32"
TCGA.AA.3850	9	117613031	117875776	130	0.08545	NEUTRAL	NA	2	"TNC,TNFSF8"
TCGA.AG.3742	9	117764848	117825084	32	-0.1308	NEUTRAL	NA	1	TNC
TCGA.AA.A01K.01A	9	117840185	131366552	895	-0.0253	NEUTRAL	NA	110	Too-Many
TCGA.AA.3941	9	117856139	120560558	1266	-0.1982	NEUTRAL	NA	6	"ASTN2,DEC1,PAPPA,TLR4,TNC,TRIM32"
TCGA.AA.3811	9	117898908	123102368	2340	-0.3027	NEUTRAL	NA	6	"ASTN2,BRINP1,DEC1,PAPPA,TLR4,TRIM32"
TCGA.AA.3844	9	117899166	117963611	41	0.1845	NEUTRAL	NA	1	1-Dec
TCGA.AA.3844	9	117972154	118167438	82	0.2476	NEUTRAL	NA	1	1-Dec
TCGA.CA.6718	9	118156519	141071474	6804	0.281	NEUTRAL	NA	287	Too-Many
TCGA.AA.3844	9	118174829	118397967	92	0.1981	NEUTRAL	NA	0	None
TCGA.AA.3864	9	118405436	120381502	915	-0.022	NEUTRAL	NA	3	"ASTN2,PAPPA,TRIM32"
TCGA.AA.3530	9	118405436	128746234	3620	0.0096	NEUTRAL	NA	64	"ARPC5L,ASTN2,BRINP1,C5,CDK5RAP2,CNTRL,CRB2,DAB2IP,DENND1A,FBXW2,GAPVD1,GOLGA1,GPR21,GSN,HSPA5,LHX2,LHX6,MAPKAP1,MEGF9,MORN5,MRRF,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PAPPA,PBX3,PDCL,PHF19,PPP6C,PSMB7,PSMD5,PTGS1,RAB14,RABEPK,RABGAP1,RBM18,RC3H2,RPL35,SCAI,STOM,STRBP,TLR4,TRAF1,TRIM32,TTLL11,WDR38,ZBTB26,ZBTB6"
TCGA.AA.3844	9	118409943	119401343	352	0.172	NEUTRAL	NA	2	"ASTN2,PAPPA"
TCGA.AA.3989	9	118409943	141071474	6736	0.0745	NEUTRAL	NA	286	Too-Many
TCGA.AA.3850	9	119029387	119792249	416	0.00625	NEUTRAL	NA	3	"ASTN2,PAPPA,TRIM32"
TCGA.AA.3844	9	119406201	120381502	556	0.3071	NEUTRAL	NA	2	"ASTN2,TRIM32"
TCGA.AG.3883	9	119558759	123404609	1766	-0.3681	NEUTRAL	NA	5	"ASTN2,BRINP1,CDK5RAP2,MEGF9,TLR4"
TCGA.AA.3850	9	119799691	119917307	68	-0.05835	NEUTRAL	NA	1	ASTN2
TCGA.AM.5820	9	119827815	136197970	4968	0.0972	NEUTRAL	NA	174	Too-Many
TCGA.AA.3850	9	119925094	120217687	156	0.00185	NEUTRAL	NA	1	ASTN2
TCGA.AA.3850	9	120219812	122729241	1112	-0.49585	NEUTRAL	NA	2	"BRINP1,TLR4"
TCGA.AA.3844	9	120389464	120458606	30	-0.1735	NEUTRAL	NA	0	None
TCGA.AA.3864	9	120398164	121221129	347	-0.1402	NEUTRAL	NA	1	TLR4
TCGA.AA.3844	9	120461620	120600699	88	0.3773	NEUTRAL	NA	1	TLR4
TCGA.AA.3844	9	120609182	122695365	905	0.0784	NEUTRAL	NA	1	BRINP1
TCGA.DM.A28A	9	120978903	123710161	1113	0.1659	NEUTRAL	NA	7	"BRINP1,CDK5RAP2,FBXW2,MEGF9,PHF19,PSMD5,TRAF1"
TCGA.AA.3712	9	121031028	141071474	5537	-0.0646	NEUTRAL	NA	282	Too-Many
TCGA.AA.3864	9	121227710	128557720	2297	0.0526	NEUTRAL	NA	60	"ARPC5L,BRINP1,C5,CDK5RAP2,CNTRL,CRB2,DAB2IP,DENND1A,FBXW2,GAPVD1,GOLGA1,GPR21,GSN,HSPA5,LHX2,LHX6,MAPKAP1,MEGF9,MORN5,MRRF,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PBX3,PDCL,PHF19,PPP6C,PSMB7,PSMD5,PTGS1,RAB14,RABEPK,RABGAP1,RBM18,RC3H2,RPL35,SCAI,STOM,STRBP,TRAF1,TTLL11,WDR38,ZBTB26,ZBTB6"
TCGA.AG.3726	9	121227710	141071474	5463	0.0249	NEUTRAL	NA	282	Too-Many
TCGA.AA.3941	9	121497900	123103056	741	-0.1896	NEUTRAL	NA	1	BRINP1
TCGA.G4.6299	9	121522757	122460217	422	-0.5023	NEUTRAL	NA	1	BRINP1
TCGA.G4.6299	9	122463061	141071474	4926	-0.1134	NEUTRAL	NA	281	Too-Many
TCGA.AA.3850	9	122734197	123936328	389	0.19945	NEUTRAL	NA	8	"C5,CDK5RAP2,CNTRL,FBXW2,MEGF9,PHF19,PSMD5,TRAF1"
TCGA.AA.3811	9	123102807	128499613	1450	0.0707	NEUTRAL	NA	58	"ARPC5L,C5,CDK5RAP2,CNTRL,CRB2,DAB2IP,DENND1A,FBXW2,GAPVD1,GOLGA1,GPR21,GSN,HSPA5,LHX2,LHX6,MAPKAP1,MEGF9,MORN5,MRRF,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PHF19,PPP6C,PSMB7,PSMD5,PTGS1,RAB14,RABEPK,RABGAP1,RBM18,RC3H2,RPL35,SCAI,STOM,STRBP,TRAF1,TTLL11,WDR38,ZBTB26,ZBTB6"
TCGA.AA.A00F.01A	9	123173588	124989089	202	0.0057	NEUTRAL	NA	16	"C5,CDK5RAP2,CNTRL,DAB2IP,FBXW2,GSN,LHX6,MEGF9,MORN5,NDUFA8,PHF19,PSMD5,RAB14,STOM,TRAF1,TTLL11"
TCGA.AA.A010.01A	9	123199521	123307929	21	-0.4163	NEUTRAL	NA	1	CDK5RAP2
TCGA.AA.A00N.01A	9	123280667	123526806	21	0.2899	NEUTRAL	NA	3	"CDK5RAP2,FBXW2,MEGF9"
TCGA.AG.3906.01A	9	123280667	123604978	36	0.0771	NEUTRAL	NA	4	"CDK5RAP2,FBXW2,MEGF9,PSMD5"
TCGA.AA.A010.01A	9	123313038	123604978	29	0.3655	NEUTRAL	NA	4	"CDK5RAP2,FBXW2,MEGF9,PSMD5"
TCGA.AA.A00D.01A	9	123313038	125084756	188	0.0557	NEUTRAL	NA	18	"C5,CDK5RAP2,CNTRL,DAB2IP,FBXW2,GSN,LHX6,MEGF9,MORN5,MRRF,NDUFA8,PHF19,PSMD5,RAB14,RBM18,STOM,TRAF1,TTLL11"
TCGA.AG.3909.01A	9	123330542	123636816	39	-0.1028	NEUTRAL	NA	5	"CDK5RAP2,FBXW2,MEGF9,PHF19,PSMD5"
TCGA.CK.5914.01A	9	123330542	123887945	101	0.2528	NEUTRAL	NA	8	"C5,CDK5RAP2,CNTRL,FBXW2,MEGF9,PHF19,PSMD5,TRAF1"
TCGA.A6.3808.01A	9	123330542	123903668	105	0.2162	NEUTRAL	NA	8	"C5,CDK5RAP2,CNTRL,FBXW2,MEGF9,PHF19,PSMD5,TRAF1"
TCGA.AG.3883	9	123412562	125556717	661	0.1231	NEUTRAL	NA	31	"C5,CNTRL,DAB2IP,FBXW2,GSN,LHX6,MEGF9,MORN5,MRRF,NDUFA8,OR1B1,OR1J1,OR1J2,OR1J4,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PHF19,PSMD5,PTGS1,RAB14,RBM18,STOM,TRAF1,TTLL11"
TCGA.AA.3982	9	123460673	123936328	119	0.1983	NEUTRAL	NA	7	"C5,CNTRL,FBXW2,MEGF9,PHF19,PSMD5,TRAF1"
TCGA.AA.A01Q.01A	9	123623323	123685928	18	-0.3129	NEUTRAL	NA	2	"PHF19,TRAF1"
TCGA.AA.A00L.01A	9	123624818	123688165	17	-0.2165	NEUTRAL	NA	2	"PHF19,TRAF1"
TCGA.AG.4009.01A	9	123629114	123688165	13	-0.48	NEUTRAL	NA	2	"PHF19,TRAF1"
TCGA.AG.3906.01A	9	123673567	125585245	181	-0.0096	NEUTRAL	NA	29	"C5,CNTRL,DAB2IP,GSN,LHX6,MORN5,MRRF,NDUFA8,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1,RAB14,RBM18,STOM,TRAF1,TTLL11"
TCGA.AG.3891.01A	9	123673567	130506816	606	0.073	NEUTRAL	NA	72	"ANGPTL2,ARPC5L,C5,C9orf117,CNTRL,CRB2,DAB2IP,DENND1A,FAM129B,GAPVD1,GARNL3,GOLGA1,GPR21,GSN,HSPA5,LHX2,LHX6,LMX1B,LRSAM1,MAPKAP1,MORN5,MRRF,MVB12B,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PBX3,PDCL,PPP6C,PSMB7,PTGS1,PTRH1,RAB14,RABEPK,RABGAP1,RALGPS1,RBM18,RC3H2,RPL12,RPL35,SCAI,SH2D3C,SLC2A8,STOM,STRBP,STXBP1,TOR2A,TRAF1,TTC16,TTLL11,WDR38,ZBTB26,ZBTB34,ZBTB43,ZBTB6,ZNF79"
TCGA.AA.A00A.01A	9	123676446	136279776	1377	0.0887	NEUTRAL	NA	173	Too-Many
TCGA.AA.A010.01A	9	123685928	123734139	12	-0.1698	NEUTRAL	NA	2	"C5,TRAF1"
TCGA.AA.A01Q.01A	9	123688165	123943625	80	0.2536	NEUTRAL	NA	4	"C5,CNTRL,RAB14,TRAF1"
TCGA.AA.A00L.01A	9	123714970	123770635	23	0.2511	NEUTRAL	NA	1	C5
TCGA.AG.4009.01A	9	123714970	123937248	77	0.0204	NEUTRAL	NA	2	"C5,CNTRL"
TCGA.AG.3909.01A	9	123751844	123812396	24	0.23	NEUTRAL	NA	1	C5
TCGA.AA.A010.01A	9	123770635	123812396	18	0.0011	NEUTRAL	NA	1	C5
TCGA.AA.A00L.01A	9	123776134	123812396	17	-0.0938	NEUTRAL	NA	1	C5
TCGA.AA.A00N.01A	9	123808437	123875753	10	-0.1515	NEUTRAL	NA	2	"C5,CNTRL"
TCGA.AG.3909.01A	9	123850578	123860627	5	-0.2627	NEUTRAL	NA	1	CNTRL
TCGA.AA.A00L.01A	9	123850578	123935534	36	0.296	NEUTRAL	NA	1	CNTRL
TCGA.A6.3810.01A	9	123852506	129599392	478	-0.3004	NEUTRAL	NA	55	"ARPC5L,CNTRL,CRB2,DAB2IP,DENND1A,GAPVD1,GOLGA1,GPR21,GSN,HSPA5,LHX2,LHX6,LMX1B,MAPKAP1,MORN5,MRRF,MVB12B,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PBX3,PDCL,PPP6C,PSMB7,PTGS1,RAB14,RABEPK,RABGAP1,RBM18,RC3H2,RPL35,SCAI,STOM,STRBP,TTLL11,WDR38,ZBTB26,ZBTB43,ZBTB6"
TCGA.AG.3909.01A	9	123870033	123898033	8	0.1485	NEUTRAL	NA	1	CNTRL
TCGA.AA.A010.01A	9	123902902	123933649	22	-0.0292	NEUTRAL	NA	1	CNTRL
TCGA.AA.A00L.01A	9	123937248	124065137	13	-0.2905	NEUTRAL	NA	3	"CNTRL,GSN,RAB14"
TCGA.AA.3861.01A	9	123939351	125140705	91	-0.283	NEUTRAL	NA	12	"CNTRL,DAB2IP,GSN,LHX6,MORN5,MRRF,NDUFA8,PTGS1,RAB14,RBM18,STOM,TTLL11"
TCGA.AA.3862.01A	9	123939351	132662217	1096	-0.0523	NEUTRAL	NA	126	Too-Many
TCGA.AA.A01Q.01A	9	123945126	124072912	11	-0.3573	NEUTRAL	NA	2	"GSN,RAB14"
TCGA.AG.3909.01A	9	123945126	124538467	42	-0.2314	NEUTRAL	NA	4	"DAB2IP,GSN,RAB14,STOM"
TCGA.CK.5914.01A	9	123949177	125033174	78	0.1648	NEUTRAL	NA	10	"DAB2IP,GSN,LHX6,MORN5,MRRF,NDUFA8,RAB14,RBM18,STOM,TTLL11"
TCGA.AA.3850	9	123960775	125001984	322	0.34955	NEUTRAL	NA	9	"DAB2IP,GSN,LHX6,MORN5,NDUFA8,RAB14,RBM18,STOM,TTLL11"
TCGA.AA.3982	9	123964829	125037622	334	0.2805	NEUTRAL	NA	9	"DAB2IP,GSN,LHX6,MORN5,MRRF,NDUFA8,RBM18,STOM,TTLL11"
TCGA.AA.A010.01A	9	124062088	124990910	68	-0.0336	NEUTRAL	NA	7	"DAB2IP,GSN,LHX6,MORN5,NDUFA8,STOM,TTLL11"
TCGA.AG.A00C.01A	9	124062088	125154417	72	0.0307	NEUTRAL	NA	10	"DAB2IP,GSN,LHX6,MORN5,MRRF,NDUFA8,PTGS1,RBM18,STOM,TTLL11"
TCGA.QL.A97D	9	124072596	141071474	4366	0.1405	NEUTRAL	NA	272	Too-Many
TCGA.AA.A00N.01A	9	124072912	124989626	64	0.0109	NEUTRAL	NA	7	"DAB2IP,GSN,LHX6,MORN5,NDUFA8,STOM,TTLL11"
TCGA.AG.4009.01A	9	124072912	125588845	85	0.0011	NEUTRAL	NA	25	"DAB2IP,GSN,LHX6,MORN5,MRRF,NDUFA8,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1,RBM18,STOM,TTLL11"
TCGA.AA.A00L.01A	9	124072912	125838458	115	0.0017	NEUTRAL	NA	30	"DAB2IP,GPR21,GSN,LHX6,MORN5,MRRF,NDUFA8,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1,RABGAP1,RBM18,RC3H2,STOM,TTLL11,ZBTB26,ZBTB6"
TCGA.AA.A01Q.01A	9	124074570	124440906	20	0.2926	NEUTRAL	NA	3	"DAB2IP,GSN,STOM"
TCGA.EI.6509	9	124076815	141071474	4362	-0.0674	NEUTRAL	NA	272	Too-Many
TCGA.AA.A01Q.01A	9	124632748	126118487	110	0.1509	NEUTRAL	NA	29	"CRB2,GPR21,LHX6,MORN5,MRRF,NDUFA8,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1,RABGAP1,RBM18,RC3H2,STRBP,TTLL11,ZBTB26,ZBTB6"
TCGA.A6.2672	9	124721530	141071474	4160	-0.489	NEUTRAL	NA	269	Too-Many
TCGA.DM.A28A	9	124721558	125028210	119	0.19	NEUTRAL	NA	6	"LHX6,MORN5,MRRF,NDUFA8,RBM18,TTLL11"
TCGA.AG.3909.01A	9	124751348	125154417	37	-0.0194	NEUTRAL	NA	7	"LHX6,MORN5,MRRF,NDUFA8,PTGS1,RBM18,TTLL11"
TCGA.A6.A56B	9	124753831	141071474	4127	-0.0734	NEUTRAL	NA	269	Too-Many
TCGA.A6.5661	9	124882680	136832527	3176	-0.4794	NEUTRAL	NA	174	Too-Many
TCGA.AG.3611.01A	9	124979310	125009779	7	-0.2152	NEUTRAL	NA	2	"LHX6,RBM18"
TCGA.AA.3850	9	125003195	125182605	68	0.16125	NEUTRAL	NA	3	"MRRF,PTGS1,RBM18"
TCGA.AG.3611.01A	9	125014077	131030647	548	0.1915	NEUTRAL	NA	78	"AK1,ANGPTL2,ARPC5L,C9orf117,C9orf16,CDK9,CIZ1,CRB2,DENND1A,DNM1,DPM2,ENG,FAM102A,FAM129B,FPGS,GAPVD1,GARNL3,GOLGA1,GOLGA2,GPR21,HSPA5,LCN2,LHX2,LMX1B,LRSAM1,MAPKAP1,MRRF,MVB12B,NAIF1,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PBX3,PDCL,PIP5KL1,PPP6C,PSMB7,PTGES2,PTGS1,PTRH1,RABEPK,RABGAP1,RALGPS1,RBM18,RC3H2,RPL12,RPL35,SCAI,SH2D3C,SLC25A25,SLC2A8,ST6GALNAC4,ST6GALNAC6,STRBP,STXBP1,TOR2A,TTC16,WDR38,ZBTB26,ZBTB34,ZBTB43,ZBTB6,ZNF79"
TCGA.AA.A010.01A	9	125023609	125588845	36	0.2307	NEUTRAL	NA	18	"MRRF,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1,RBM18"
TCGA.DM.A28A	9	125036561	135879019	2827	-0.2468	NEUTRAL	NA	147	Too-Many
TCGA.AA.A00F.01A	9	125047411	134070549	975	0.0803	NEUTRAL	NA	129	Too-Many
TCGA.AA.3982	9	125060890	125076202	7	0.0245	NEUTRAL	NA	1	MRRF
TCGA.AA.3982	9	125099124	125146979	28	0.3754	NEUTRAL	NA	1	PTGS1
TCGA.AA.A00D.01A	9	125133310	125588845	27	-0.3995	NEUTRAL	NA	16	"OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1"
TCGA.AA.3982	9	125147104	125252976	40	-0.0707	NEUTRAL	NA	2	"OR1J1,PTGS1"
TCGA.AA.3850	9	125186010	125502868	122	-0.16105	NEUTRAL	NA	11	"OR1B1,OR1J1,OR1J2,OR1J4,OR1L1,OR1L3,OR1L4,OR1L8,OR1N1,OR1N2,OR1Q1"
TCGA.AG.A00C.01A	9	125239270	125588845	18	-0.2889	NEUTRAL	NA	15	"OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL"
TCGA.AA.3982	9	125268883	126045282	188	0.0757	NEUTRAL	NA	20	"GPR21,OR1B1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,RABGAP1,RC3H2,STRBP,ZBTB26,ZBTB6"
TCGA.AA.3850	9	125506351	125881540	76	0.22645	NEUTRAL	NA	9	"GPR21,OR1K1,OR1L6,OR5C1,PDCL,RABGAP1,RC3H2,ZBTB26,ZBTB6"
TCGA.AG.3883	9	125560266	126179798	125	-0.2522	NEUTRAL	NA	10	"CRB2,DENND1A,GPR21,OR1K1,PDCL,RABGAP1,RC3H2,STRBP,ZBTB26,ZBTB6"
TCGA.CK.5914.01A	9	125582327	125588845	3	-0.0017	NEUTRAL	NA	1	PDCL
TCGA.A6.3808.01A	9	125617421	127549216	159	0.2252	NEUTRAL	NA	14	"CRB2,DENND1A,GPR21,LHX2,NEK6,NR5A1,NR6A1,OLFML2A,PSMB7,RABGAP1,RC3H2,STRBP,ZBTB26,ZBTB6"
TCGA.AA.3861.01A	9	125617421	130712650	520	-0.3644	NEUTRAL	NA	52	"AK1,ANGPTL2,ARPC5L,C9orf117,CDK9,CRB2,DENND1A,DPM2,ENG,FAM102A,FAM129B,FPGS,GAPVD1,GARNL3,GOLGA1,GPR21,HSPA5,LHX2,LMX1B,LRSAM1,MAPKAP1,MVB12B,NEK6,NR5A1,NR6A1,OLFML2A,PBX3,PIP5KL1,PPP6C,PSMB7,PTRH1,RABEPK,RABGAP1,RALGPS1,RC3H2,RPL12,RPL35,SCAI,SH2D3C,SLC2A8,ST6GALNAC4,ST6GALNAC6,STRBP,STXBP1,TOR2A,TTC16,WDR38,ZBTB26,ZBTB34,ZBTB43,ZBTB6,ZNF79"
TCGA.CK.5914.01A	9	125637435	125680881	10	-0.4557	NEUTRAL	NA	3	"RC3H2,ZBTB26,ZBTB6"
TCGA.AG.3906.01A	9	125641995	130453004	371	-0.0072	NEUTRAL	NA	38	"ANGPTL2,ARPC5L,CRB2,DENND1A,FAM129B,GAPVD1,GARNL3,GOLGA1,GPR21,HSPA5,LHX2,LMX1B,LRSAM1,MAPKAP1,MVB12B,NEK6,NR5A1,NR6A1,OLFML2A,PBX3,PPP6C,PSMB7,RABEPK,RABGAP1,RALGPS1,RC3H2,RPL12,RPL35,SCAI,SLC2A8,STRBP,STXBP1,WDR38,ZBTB26,ZBTB34,ZBTB43,ZBTB6,ZNF79"
TCGA.AA.A010.01A	9	125655146	127177577	112	0.0566	NEUTRAL	NA	11	"CRB2,DENND1A,GPR21,LHX2,NEK6,PSMB7,RABGAP1,RC3H2,STRBP,ZBTB26,ZBTB6"
TCGA.AG.4009.01A	9	125673028	125796880	15	-0.0763	NEUTRAL	NA	4	"GPR21,RABGAP1,ZBTB26,ZBTB6"
TCGA.AA.A00D.01A	9	125673028	131731631	707	0.108	NEUTRAL	NA	81	"AK1,ANGPTL2,ARPC5L,C9orf114,C9orf117,C9orf16,CCBL1,CDK9,CERCAM,CIZ1,COQ4,CRB2,DENND1A,DNM1,DOLK,DPM2,ENDOG,ENG,FAM102A,FAM129B,FPGS,GAPVD1,GARNL3,GLE1,GOLGA1,GOLGA2,GPR21,HSPA5,LCN2,LHX2,LMX1B,LRRC8A,LRSAM1,MAPKAP1,MVB12B,NAIF1,NEK6,NR5A1,NR6A1,NUP188,ODF2,OLFML2A,PBX3,PHYHD1,PIP5KL1,PKN3,PPP6C,PSMB7,PTGES2,PTRH1,RABEPK,RABGAP1,RALGPS1,RPL12,RPL35,SCAI,SET,SH2D3C,SLC25A25,SLC27A4,SLC2A8,SPTAN1,ST6GALNAC4,ST6GALNAC6,STRBP,STXBP1,SWI5,TBC1D13,TOR2A,TRUB2,TTC16,URM1,WDR34,WDR38,ZBTB26,ZBTB34,ZBTB43,ZBTB6,ZDHHC12,ZER1,ZNF79"
TCGA.AG.3909.01A	9	125719302	126165629	60	0.0567	NEUTRAL	NA	5	"CRB2,DENND1A,GPR21,RABGAP1,STRBP"
TCGA.CK.5914.01A	9	125719302	126219583	70	0.3069	NEUTRAL	NA	5	"CRB2,DENND1A,GPR21,RABGAP1,STRBP"
TCGA.AG.A00C.01A	9	125746725	126641164	75	-0.172	NEUTRAL	NA	5	"CRB2,DENND1A,GPR21,RABGAP1,STRBP"
TCGA.AG.4009.01A	9	125836565	125946321	30	0.0068	NEUTRAL	NA	2	"RABGAP1,STRBP"
TCGA.AA.A00L.01A	9	125863793	125890417	7	0.1035	NEUTRAL	NA	2	"RABGAP1,STRBP"
TCGA.AA.A00L.01A	9	125895087	126137445	24	-0.2769	NEUTRAL	NA	2	"CRB2,STRBP"
TCGA.AA.3850	9	125954348	126441396	139	0.28375	NEUTRAL	NA	3	"CRB2,DENND1A,STRBP"
TCGA.AA.A00N.01A	9	126028344	126176763	19	-0.4103	NEUTRAL	NA	3	"CRB2,DENND1A,STRBP"
TCGA.AA.3982	9	126048348	126272181	75	0.3698	NEUTRAL	NA	2	"CRB2,DENND1A"
TCGA.AA.A00L.01A	9	126139086	130169364	235	0.0838	NEUTRAL	NA	27	"ANGPTL2,ARPC5L,CRB2,DENND1A,GAPVD1,GARNL3,GOLGA1,HSPA5,LHX2,LMX1B,MAPKAP1,MVB12B,NEK6,NR5A1,NR6A1,OLFML2A,PBX3,PPP6C,PSMB7,RABEPK,RALGPS1,RPL35,SCAI,SLC2A8,WDR38,ZBTB34,ZBTB43"
TCGA.AG.4009.01A	9	126143680	128064815	133	0.0962	NEUTRAL	NA	16	"ARPC5L,DENND1A,GAPVD1,GOLGA1,HSPA5,LHX2,NEK6,NR5A1,NR6A1,OLFML2A,PPP6C,PSMB7,RABEPK,RPL35,SCAI,WDR38"
TCGA.AG.3883	9	126181587	130349013	1157	0.1178	NEUTRAL	NA	30	"ANGPTL2,ARPC5L,DENND1A,FAM129B,GAPVD1,GARNL3,GOLGA1,HSPA5,LHX2,LMX1B,LRSAM1,MAPKAP1,MVB12B,NEK6,NR5A1,NR6A1,OLFML2A,PBX3,PPP6C,PSMB7,RABEPK,RALGPS1,RPL12,RPL35,SCAI,SLC2A8,WDR38,ZBTB34,ZBTB43,ZNF79"
TCGA.AA.A01Q.01A	9	126220020	126774591	14	0.1912	NEUTRAL	NA	2	"DENND1A,LHX2"
TCGA.AG.A01W.01A	9	126258684	129509084	305	-0.0562	NEUTRAL	NA	20	"ARPC5L,DENND1A,GAPVD1,GOLGA1,HSPA5,LHX2,LMX1B,MAPKAP1,MVB12B,NEK6,NR5A1,NR6A1,OLFML2A,PBX3,PPP6C,PSMB7,RABEPK,RPL35,SCAI,WDR38"
TCGA.AA.3982	9	126272497	126719822	129	-0.0079	NEUTRAL	NA	1	DENND1A
TCGA.CK.5914.01A	9	126414245	127265311	57	0.1076	NEUTRAL	NA	5	"DENND1A,LHX2,NEK6,NR5A1,PSMB7"
TCGA.AA.3850	9	126445250	126563909	38	-0.23165	NEUTRAL	NA	1	DENND1A
TCGA.AA.3850	9	126596546	128512347	449	0.31655	NEUTRAL	NA	18	"ARPC5L,DENND1A,GAPVD1,GOLGA1,HSPA5,LHX2,MAPKAP1,NEK6,NR5A1,NR6A1,OLFML2A,PBX3,PPP6C,PSMB7,RABEPK,RPL35,SCAI,WDR38"
TCGA.G4.6322	9	126689149	133279775	1572	-0.0301	NEUTRAL	NA	95	"AK1,ANGPTL2,ARPC5L,ASB6,C9orf106,C9orf114,C9orf117,C9orf16,C9orf50,C9orf78,CCBL1,CDK9,CERCAM,CIZ1,COQ4,CRAT,DENND1A,DNM1,DOLK,DOLPP1,DPM2,ENDOG,ENG,FAM102A,FAM129B,FAM73B,FNBP1,FPGS,GAPVD1,GARNL3,GLE1,GOLGA1,GOLGA2,GPR107,HMCN2,HSPA5,IER5L,LCN2,LHX2,LMX1B,LRRC8A,LRSAM1,MAPKAP1,MVB12B,NAIF1,NCS1,NEK6,NR5A1,NR6A1,NTMT1,NUP188,ODF2,OLFML2A,PBX3,PHYHD1,PIP5KL1,PKN3,PPP2R4,PPP6C,PRRX2,PSMB7,PTGES,PTGES2,PTRH1,RABEPK,RALGPS1,RPL12,RPL35,SCAI,SET,SH2D3C,SH3GLB2,SLC25A25,SLC27A4,SLC2A8,SPTAN1,ST6GALNAC4,ST6GALNAC6,STXBP1,SWI5,TBC1D13,TOR1A,TOR1B,TOR2A,TRUB2,TTC16,URM1,USP20,WDR34,WDR38,ZBTB34,ZBTB43,ZDHHC12,ZER1,ZNF79"
TCGA.A6.5665	9	126718187	141071474	3573	-0.5136	NEUTRAL	NA	239	Too-Many
TCGA.AA.3982	9	126722646	128512347	408	0.2608	NEUTRAL	NA	17	"ARPC5L,GAPVD1,GOLGA1,HSPA5,LHX2,MAPKAP1,NEK6,NR5A1,NR6A1,OLFML2A,PBX3,PPP6C,PSMB7,RABEPK,RPL35,SCAI,WDR38"
TCGA.AA.A00N.01A	9	126774591	127289011	52	-0.1838	NEUTRAL	NA	5	"LHX2,NEK6,NR5A1,NR6A1,PSMB7"
TCGA.AG.3909.01A	9	126776198	127244997	22	-0.1075	NEUTRAL	NA	4	"LHX2,NEK6,NR5A1,PSMB7"
TCGA.AG.A00C.01A	9	126794738	131447383	565	0.0952	NEUTRAL	NA	63	"AK1,ANGPTL2,ARPC5L,C9orf117,C9orf16,CDK9,CERCAM,CIZ1,COQ4,DNM1,DPM2,ENG,FAM102A,FAM129B,FPGS,GAPVD1,GARNL3,GLE1,GOLGA1,GOLGA2,HSPA5,LCN2,LHX2,LMX1B,LRSAM1,MAPKAP1,MVB12B,NAIF1,NEK6,NR5A1,NR6A1,ODF2,OLFML2A,PBX3,PIP5KL1,PPP6C,PSMB7,PTGES2,PTRH1,RABEPK,RALGPS1,RPL12,RPL35,SCAI,SET,SH2D3C,SLC25A25,SLC27A4,SLC2A8,SPTAN1,ST6GALNAC4,ST6GALNAC6,STXBP1,SWI5,TOR2A,TRUB2,TTC16,URM1,WDR34,WDR38,ZBTB34,ZBTB43,ZNF79"
TCGA.D5.6923	9	127104774	141071474	3430	-0.0385	NEUTRAL	NA	238	Too-Many
TCGA.AA.A01Q.01A	9	127119006	127618750	32	0.1373	NEUTRAL	NA	5	"NR5A1,NR6A1,OLFML2A,PSMB7,WDR38"
TCGA.AA.A010.01A	9	127306010	127650495	34	0.1322	NEUTRAL	NA	6	"ARPC5L,GOLGA1,NR6A1,OLFML2A,RPL35,WDR38"
TCGA.AG.3909.01A	9	127495537	127572040	8	0.1732	NEUTRAL	NA	2	"NR6A1,OLFML2A"
TCGA.CK.5914.01A	9	127495537	127644023	28	0.0138	NEUTRAL	NA	6	"ARPC5L,GOLGA1,NR6A1,OLFML2A,RPL35,WDR38"
TCGA.AG.3909.01A	9	127642763	127685325	14	0.2916	NEUTRAL	NA	1	GOLGA1
TCGA.AA.A00N.01A	9	127644732	127674142	9	0.1954	NEUTRAL	NA	1	GOLGA1
TCGA.AA.A01Q.01A	9	127644732	128724334	80	0.0704	NEUTRAL	NA	8	"GAPVD1,GOLGA1,HSPA5,MAPKAP1,PBX3,PPP6C,RABEPK,SCAI"
TCGA.CK.5914.01A	9	127670602	127688916	6	0.2936	NEUTRAL	NA	1	GOLGA1
TCGA.A6.3808.01A	9	127683361	129645516	124	-0.3122	NEUTRAL	NA	12	"GAPVD1,GOLGA1,HSPA5,LMX1B,MAPKAP1,MVB12B,PBX3,PPP6C,RABEPK,SCAI,ZBTB34,ZBTB43"
TCGA.CK.5914.01A	9	127690437	128094772	57	-0.2593	NEUTRAL	NA	6	"GAPVD1,GOLGA1,HSPA5,PPP6C,RABEPK,SCAI"
TCGA.AA.3509.01A	9	127700809	128104439	59	-0.4607	NEUTRAL	NA	6	"GAPVD1,GOLGA1,HSPA5,PPP6C,RABEPK,SCAI"
TCGA.AA.A00N.01A	9	127733610	127828204	16	0.252	NEUTRAL	NA	1	SCAI
TCGA.AG.3909.01A	9	127733610	127828204	16	0.2353	NEUTRAL	NA	1	SCAI
TCGA.AG.3909.01A	9	127933310	128074697	20	0.253	NEUTRAL	NA	4	"GAPVD1,HSPA5,PPP6C,RABEPK"
TCGA.AG.4009.01A	9	128067287	128677953	37	-0.2645	NEUTRAL	NA	3	"GAPVD1,MAPKAP1,PBX3"
TCGA.AA.A010.01A	9	128097393	128117906	11	0.0977	NEUTRAL	NA	1	GAPVD1
TCGA.CK.5914.01A	9	128097393	128728059	38	0.314	NEUTRAL	NA	3	"GAPVD1,MAPKAP1,PBX3"
TCGA.AG.3909.01A	9	128109049	129645516	47	-0.0173	NEUTRAL	NA	7	"GAPVD1,LMX1B,MAPKAP1,MVB12B,PBX3,ZBTB34,ZBTB43"
TCGA.AA.3509.01A	9	128109049	132662654	771	-0.1243	NEUTRAL	NA	77	"AK1,ANGPTL2,ASB6,C9orf106,C9orf114,C9orf117,C9orf16,C9orf50,C9orf78,CCBL1,CDK9,CERCAM,CIZ1,COQ4,CRAT,DNM1,DOLK,DOLPP1,DPM2,ENDOG,ENG,FAM102A,FAM129B,FAM73B,FNBP1,FPGS,GAPVD1,GARNL3,GLE1,GOLGA2,IER5L,LCN2,LMX1B,LRRC8A,LRSAM1,MAPKAP1,MVB12B,NAIF1,NTMT1,NUP188,ODF2,PBX3,PHYHD1,PIP5KL1,PKN3,PPP2R4,PRRX2,PTGES,PTGES2,PTRH1,RALGPS1,RPL12,SET,SH2D3C,SH3GLB2,SLC25A25,SLC27A4,SLC2A8,SPTAN1,ST6GALNAC4,ST6GALNAC6,STXBP1,SWI5,TBC1D13,TOR1A,TOR1B,TOR2A,TRUB2,TTC16,URM1,USP20,WDR34,ZBTB34,ZBTB43,ZDHHC12,ZER1,ZNF79"
TCGA.AA.A010.01A	9	128121649	130005336	80	-0.4345	NEUTRAL	NA	9	"ANGPTL2,GAPVD1,LMX1B,MAPKAP1,MVB12B,PBX3,RALGPS1,ZBTB34,ZBTB43"
TCGA.AA.A00N.01A	9	128246672	130446599	177	0.0601	NEUTRAL	NA	15	"ANGPTL2,FAM129B,GARNL3,LMX1B,LRSAM1,MAPKAP1,MVB12B,PBX3,RALGPS1,RPL12,SLC2A8,STXBP1,ZBTB34,ZBTB43,ZNF79"
TCGA.AA.3844	9	128250589	128442030	43	0.338	NEUTRAL	NA	1	MAPKAP1
TCGA.AA.3982	9	128519085	128686669	35	-0.3067	NEUTRAL	NA	1	PBX3
TCGA.AA.3850	9	128519085	128731817	52	-0.47065	NEUTRAL	NA	1	PBX3
TCGA.AA.3844	9	128574675	128692494	33	0.0051	NEUTRAL	NA	1	PBX3
TCGA.AA.3864	9	128621746	138924278	2864	0.2189	NEUTRAL	NA	150	Too-Many
TCGA.AA.3982	9	128686799	140955546	3093	0.366	NEUTRAL	NA	223	Too-Many
TCGA.AG.4009.01A	9	128691907	129246183	14	0.1626	NEUTRAL	NA	2	"MVB12B,PBX3"
TCGA.AA.3811	9	128695179	128724830	9	0.0316	NEUTRAL	NA	1	PBX3
TCGA.A6.A567	9	128711454	140382635	2984	-0.3339	NEUTRAL	NA	217	Too-Many
TCGA.AA.3811	9	128725542	141071474	3114	0.225	NEUTRAL	NA	223	Too-Many
TCGA.AA.3530	9	128748248	141071474	3099	0.31	NEUTRAL	NA	222	Too-Many
TCGA.A6.5660	9	128783878	141071474	3091	0.0287	NEUTRAL	NA	222	Too-Many
TCGA.5M.AAT5	9	128983514	141071474	3001	-0.2224	NEUTRAL	NA	222	Too-Many
TCGA.CK.5914.01A	9	129097572	129645516	25	-0.2401	NEUTRAL	NA	4	"LMX1B,MVB12B,ZBTB34,ZBTB43"
TCGA.A6.2679	9	129156501	141071474	2938	0.1603	NEUTRAL	NA	222	Too-Many
TCGA.AG.4009.01A	9	129453095	129641688	8	-0.304	NEUTRAL	NA	3	"LMX1B,ZBTB34,ZBTB43"
TCGA.AG.A01W.01A	9	129536423	129755592	74	-0.0267	NEUTRAL	NA	3	"RALGPS1,ZBTB34,ZBTB43"
TCGA.AA.A01Q.01A	9	129594752	130145669	53	-0.0285	NEUTRAL	NA	5	"ANGPTL2,GARNL3,RALGPS1,ZBTB34,ZBTB43"
TCGA.CM.6170	9	129669555	141071474	2780	-0.3207	NEUTRAL	NA	218	Too-Many
TCGA.AG.4009.01A	9	129724497	129961243	17	0.1422	NEUTRAL	NA	2	"ANGPTL2,RALGPS1"
TCGA.A6.3810.01A	9	129724497	141109683	2248	-0.459	NEUTRAL	NA	219	Too-Many
TCGA.AG.A01W.01A	9	129782045	129927315	17	0.3356	NEUTRAL	NA	2	"ANGPTL2,RALGPS1"
TCGA.AA.A02K.01A	9	129796661	139733314	1696	0.1756	NEUTRAL	NA	168	Too-Many
TCGA.AG.A01W.01A	9	129937330	130381691	154	-0.2058	NEUTRAL	NA	8	"FAM129B,GARNL3,LRSAM1,RALGPS1,RPL12,SLC2A8,STXBP1,ZNF79"
TCGA.CK.5914.01A	9	129958716	130005336	10	-0.1759	NEUTRAL	NA	1	RALGPS1
TCGA.AG.4009.01A	9	129974390	130027125	7	-0.3917	NEUTRAL	NA	2	"GARNL3,RALGPS1"
TCGA.AG.4009.01A	9	130053388	130488481	112	0.2315	NEUTRAL	NA	10	"C9orf117,FAM129B,GARNL3,LRSAM1,PTRH1,RPL12,SLC2A8,STXBP1,TTC16,ZNF79"
TCGA.A6.3808.01A	9	130104446	130272374	64	-0.5043	NEUTRAL	NA	6	"FAM129B,GARNL3,LRSAM1,RPL12,SLC2A8,ZNF79"
TCGA.AG.3909.01A	9	130145669	130341142	57	-0.1733	NEUTRAL	NA	6	"FAM129B,GARNL3,LRSAM1,RPL12,SLC2A8,ZNF79"
TCGA.AA.A029.01A	9	130145669	141015884	1229	-0.1908	NEUTRAL	NA	216	Too-Many
TCGA.CK.5914.01A	9	130151146	130341142	59	-0.1768	NEUTRAL	NA	6	"FAM129B,GARNL3,LRSAM1,RPL12,SLC2A8,ZNF79"
TCGA.AA.A02E.01A	9	130162159	141015884	1279	-0.2572	NEUTRAL	NA	215	Too-Many
TCGA.AA.A01Q.01A	9	130191054	130206280	4	-0.059	NEUTRAL	NA	1	ZNF79
TCGA.AA.A00L.01A	9	130255037	131231410	245	0.0465	NEUTRAL	NA	32	"AK1,C9orf117,C9orf16,CDK9,CERCAM,CIZ1,COQ4,DNM1,DPM2,ENG,FAM102A,FAM129B,FPGS,GOLGA2,LCN2,LRSAM1,NAIF1,ODF2,PIP5KL1,PTGES2,PTRH1,SH2D3C,SLC25A25,SLC27A4,ST6GALNAC4,ST6GALNAC6,STXBP1,SWI5,TOR2A,TRUB2,TTC16,URM1"
TCGA.AA.A00Q.01A	9	130259473	130280067	10	-0.4428	NEUTRAL	NA	2	"FAM129B,LRSAM1"
TCGA.AA.A00Q.01A	9	130285940	134183340	650	0.0841	NEUTRAL	NA	78	"ABL1,AIF1L,AK1,ASB6,ASS1,C9orf106,C9orf114,C9orf117,C9orf16,C9orf50,C9orf78,CCBL1,CDK9,CERCAM,CIZ1,COQ4,CRAT,DNM1,DOLK,DOLPP1,DPM2,ENDOG,ENG,EXOSC2,FAM102A,FAM129B,FAM73B,FAM78A,FIBCD1,FNBP1,FPGS,FUBP3,GLE1,GOLGA2,GPR107,HMCN2,IER5L,LAMC3,LCN2,LRRC8A,NAIF1,NCS1,NTMT1,NUP188,NUP214,ODF2,PHYHD1,PIP5KL1,PKN3,PPAPDC3,PPP2R4,PRDM12,PRRX2,PTGES,PTGES2,PTRH1,QRFP,SET,SH2D3C,SH3GLB2,SLC25A25,SLC27A4,SPTAN1,ST6GALNAC4,ST6GALNAC6,STXBP1,SWI5,TBC1D13,TOR1A,TOR1B,TOR2A,TRUB2,TTC16,URM1,USP20,WDR34,ZDHHC12,ZER1"
TCGA.AA.A01Q.01A	9	130331038	130489510	36	-0.0649	NEUTRAL	NA	5	"C9orf117,FAM129B,PTRH1,STXBP1,TTC16"
TCGA.AG.3883	9	130361160	130753030	70	-0.2292	NEUTRAL	NA	15	"AK1,C9orf117,CDK9,DPM2,ENG,FAM102A,FPGS,PIP5KL1,PTRH1,SH2D3C,ST6GALNAC4,ST6GALNAC6,STXBP1,TOR2A,TTC16"
TCGA.AG.A01W.01A	9	130395016	130609849	82	-0.2518	NEUTRAL	NA	9	"C9orf117,CDK9,ENG,FPGS,PTRH1,SH2D3C,STXBP1,TOR2A,TTC16"
TCGA.AA.A010.01A	9	130415944	130422247	3	0.0951	NEUTRAL	NA	1	STXBP1
TCGA.AA.A010.01A	9	130446599	130487034	22	0.1613	NEUTRAL	NA	4	"C9orf117,PTRH1,STXBP1,TTC16"
TCGA.AG.3909.01A	9	130446599	130540792	39	-3.00E-04	NEUTRAL	NA	6	"C9orf117,PTRH1,SH2D3C,STXBP1,TOR2A,TTC16"
TCGA.AG.3906.01A	9	130469262	130492958	22	-0.3041	NEUTRAL	NA	3	"C9orf117,PTRH1,TTC16"
TCGA.CK.5914.01A	9	130471681	131231410	244	-0.1812	NEUTRAL	NA	29	"AK1,C9orf117,C9orf16,CDK9,CERCAM,CIZ1,COQ4,DNM1,DPM2,ENG,FAM102A,FPGS,GOLGA2,LCN2,NAIF1,ODF2,PIP5KL1,PTGES2,PTRH1,SH2D3C,SLC25A25,SLC27A4,ST6GALNAC4,ST6GALNAC6,SWI5,TOR2A,TRUB2,TTC16,URM1"
TCGA.AA.3980.01A	9	130474951	130479076	8	-0.2095	NEUTRAL	NA	3	"C9orf117,PTRH1,TTC16"
TCGA.AA.3815.01A	9	130474951	141109683	1797	-0.0144	NEUTRAL	NA	210	Too-Many
TCGA.AA.3980.01A	9	130479621	140328190	1800	0.328	NEUTRAL	NA	198	Too-Many
TCGA.AA.A02F.01A	9	130482320	141009976	962	-0.2191	NEUTRAL	NA	207	Too-Many
TCGA.AG.A02X.01A	9	130488481	131112538	157	-0.3348	NEUTRAL	NA	24	"AK1,C9orf16,CDK9,CIZ1,COQ4,DNM1,DPM2,ENG,FAM102A,FPGS,GOLGA2,LCN2,NAIF1,PIP5KL1,PTGES2,SH2D3C,SLC25A25,SLC27A4,ST6GALNAC4,ST6GALNAC6,SWI5,TOR2A,TRUB2,TTC16"
TCGA.AG.3906.01A	9	130494286	130505100	6	0.2683	NEUTRAL	NA	2	"SH2D3C,TOR2A"
TCGA.A6.3808.01A	9	130502500	131451812	305	-0.1591	NEUTRAL	NA	29	"AK1,C9orf16,CDK9,CERCAM,CIZ1,COQ4,DNM1,DPM2,ENG,FAM102A,FPGS,GLE1,GOLGA2,LCN2,NAIF1,ODF2,PIP5KL1,PTGES2,SET,SH2D3C,SLC25A25,SLC27A4,SPTAN1,ST6GALNAC4,ST6GALNAC6,SWI5,TRUB2,URM1,WDR34"
TCGA.AG.3909.01A	9	130549744	131046782	128	-0.4463	NEUTRAL	NA	18	"AK1,C9orf16,CDK9,CIZ1,DNM1,DPM2,ENG,FAM102A,FPGS,GOLGA2,LCN2,NAIF1,PIP5KL1,PTGES2,SLC25A25,ST6GALNAC4,ST6GALNAC6,SWI5"
TCGA.AG.3891.01A	9	130550219	130869270	59	0.1841	NEUTRAL	NA	11	"AK1,CDK9,DPM2,ENG,FAM102A,FPGS,NAIF1,PIP5KL1,SLC25A25,ST6GALNAC4,ST6GALNAC6"
TCGA.AG.3906.01A	9	130566517	130649716	25	0.0994	NEUTRAL	NA	4	"AK1,ENG,FPGS,ST6GALNAC6"
TCGA.AA.A010.01A	9	130569215	130636795	29	-0.3473	NEUTRAL	NA	3	"AK1,ENG,FPGS"
TCGA.AG.A01W.01A	9	130635615	130870251	76	-0.322	NEUTRAL	NA	8	"AK1,DPM2,FAM102A,NAIF1,PIP5KL1,SLC25A25,ST6GALNAC4,ST6GALNAC6"
TCGA.AA.A00Z.01A	9	130635623	134503278	8	0.2126	NEUTRAL	NA	72	"ABL1,AIF1L,AK1,ASB6,ASS1,C9orf106,C9orf114,C9orf16,C9orf50,C9orf78,CCBL1,CERCAM,CIZ1,COQ4,CRAT,DNM1,DOLK,DOLPP1,DPM2,ENDOG,EXOSC2,FAM102A,FAM73B,FAM78A,FIBCD1,FNBP1,FUBP3,GLE1,GOLGA2,GPR107,HMCN2,IER5L,LAMC3,LCN2,LRRC8A,NAIF1,NCS1,NTMT1,NUP188,NUP214,ODF2,PHYHD1,PIP5KL1,PKN3,POMT1,PPAPDC3,PPP2R4,PRDM12,PRRC2B,PRRX2,PTGES,PTGES2,QRFP,RAPGEF1,SET,SH3GLB2,SLC25A25,SLC27A4,SPTAN1,ST6GALNAC4,ST6GALNAC6,SWI5,TBC1D13,TOR1A,TOR1B,TRUB2,UCK1,URM1,USP20,WDR34,ZDHHC12,ZER1"
TCGA.AG.3605.01A	9	130635623	134503278	10	0.2815	NEUTRAL	NA	72	"ABL1,AIF1L,AK1,ASB6,ASS1,C9orf106,C9orf114,C9orf16,C9orf50,C9orf78,CCBL1,CERCAM,CIZ1,COQ4,CRAT,DNM1,DOLK,DOLPP1,DPM2,ENDOG,EXOSC2,FAM102A,FAM73B,FAM78A,FIBCD1,FNBP1,FUBP3,GLE1,GOLGA2,GPR107,HMCN2,IER5L,LAMC3,LCN2,LRRC8A,NAIF1,NCS1,NTMT1,NUP188,NUP214,ODF2,PHYHD1,PIP5KL1,PKN3,POMT1,PPAPDC3,PPP2R4,PRDM12,PRRC2B,PRRX2,PTGES,PTGES2,QRFP,RAPGEF1,SET,SH3GLB2,SLC25A25,SLC27A4,SPTAN1,ST6GALNAC4,ST6GALNAC6,SWI5,TBC1D13,TOR1A,TOR1B,TRUB2,UCK1,URM1,USP20,WDR34,ZDHHC12,ZER1"
TCGA.AA.A010.01A	9	130684074	131085082	116	-0.2598	NEUTRAL	NA	14	"C9orf16,CIZ1,COQ4,DNM1,DPM2,FAM102A,GOLGA2,LCN2,NAIF1,PIP5KL1,PTGES2,SLC25A25,SWI5,TRUB2"
TCGA.AG.3906.01A	9	130688119	130742223	11	0.2206	NEUTRAL	NA	3	"DPM2,FAM102A,PIP5KL1"
TCGA.AG.4009.01A	9	130697934	130700009	4	0.3242	NEUTRAL	NA	1	DPM2
TCGA.AG.4009.01A	9	130705395	131030148	75	-0.2804	NEUTRAL	NA	9	"C9orf16,CIZ1,DNM1,FAM102A,GOLGA2,LCN2,NAIF1,PTGES2,SLC25A25"
TCGA.AA.3861.01A	9	130715782	131772860	333	0.0106	NEUTRAL	NA	32	"C9orf114,C9orf16,CCBL1,CERCAM,CIZ1,COQ4,DNM1,DOLK,ENDOG,FAM102A,GLE1,GOLGA2,LCN2,LRRC8A,NAIF1,NUP188,ODF2,PHYHD1,PKN3,PTGES2,SET,SH3GLB2,SLC25A25,SLC27A4,SPTAN1,SWI5,TBC1D13,TRUB2,URM1,WDR34,ZDHHC12,ZER1"
TCGA.AG.3883	9	130770030	132720769	391	0.1732	NEUTRAL	NA	47	"ASB6,C9orf106,C9orf114,C9orf16,C9orf50,C9orf78,CCBL1,CERCAM,CIZ1,COQ4,CRAT,DNM1,DOLK,DOLPP1,ENDOG,FAM73B,FNBP1,GLE1,GOLGA2,IER5L,LCN2,LRRC8A,NAIF1,NTMT1,NUP188,ODF2,PHYHD1,PKN3,PPP2R4,PRRX2,PTGES,PTGES2,SET,SH3GLB2,SLC25A25,SLC27A4,SPTAN1,SWI5,TBC1D13,TOR1A,TOR1B,TRUB2,URM1,USP20,WDR34,ZDHHC12,ZER1"
TCGA.AG.3906.01A	9	130825685	130939795	31	-0.0887	NEUTRAL	NA	6	"C9orf16,CIZ1,LCN2,NAIF1,PTGES2,SLC25A25"
TCGA.AG.A01W.01A	9	130871104	130900604	16	0.1768	NEUTRAL	NA	2	"PTGES2,SLC25A25"
TCGA.AG.3891.01A	9	130883377	130886733	5	-0.5086	NEUTRAL	NA	1	PTGES2
TCGA.AG.3891.01A	9	130887472	136629121	941	0.2218	NEUTRAL	NA	99	"ABL1,ABO,ADAMTS13,ADAMTSL2,AIF1L,AK8,ASB6,ASS1,BARHL1,C9orf106,C9orf114,C9orf16,C9orf171,C9orf50,C9orf78,C9orf9,CACFD1,CCBL1,CEL,CERCAM,CIZ1,COQ4,CRAT,DBH,DDX31,DNM1,DOLK,DOLPP1,ENDOG,EXOSC2,FAM163B,FAM73B,FAM78A,FIBCD1,FNBP1,FUBP3,GBGT1,GFI1B,GLE1,GOLGA2,GPR107,GTF3C4,GTF3C5,HMCN2,IER5L,LAMC3,LCN2,LRRC8A,MED22,MED27,NCS1,NTMT1,NTNG2,NUP188,NUP214,OBP2B,ODF2,PHYHD1,PKN3,POMT1,PPAPDC3,PPP2R4,PRDM12,PRRC2B,PRRX2,PTGES,PTGES2,QRFP,RALGDS,RAPGEF1,REXO4,RPL7A,SARDH,SET,SETX,SH3GLB2,SLC27A4,SLC2A6,SPTAN1,STKLD1,SURF1,SURF2,SURF4,SURF6,SWI5,TBC1D13,TMEM8C,TOR1A,TOR1B,TRUB2,TSC1,TTF1,UCK1,URM1,USP20,VAV2,WDR34,ZDHHC12,ZER1"
TCGA.AG.A01W.01A	9	130901919	130949429	18	-0.3103	NEUTRAL	NA	3	"C9orf16,CIZ1,LCN2"
TCGA.AA.A01F.01A	9	130938580	131772860	282	-0.2236	NEUTRAL	NA	26	"C9orf114,CCBL1,CERCAM,CIZ1,COQ4,DNM1,DOLK,ENDOG,GLE1,GOLGA2,LRRC8A,NUP188,ODF2,PHYHD1,PKN3,SET,SH3GLB2,SLC27A4,SPTAN1,SWI5,TBC1D13,TRUB2,URM1,WDR34,ZDHHC12,ZER1"
TCGA.AG.3906.01A	9	130940619	131087369	57	0.3733	NEUTRAL	NA	6	"CIZ1,COQ4,DNM1,GOLGA2,SWI5,TRUB2"
TCGA.AG.A01W.01A	9	130978921	131692543	56	0.1808	NEUTRAL	NA	22	"C9orf114,CCBL1,CERCAM,COQ4,DNM1,ENDOG,GLE1,GOLGA2,LRRC8A,ODF2,PHYHD1,PKN3,SET,SLC27A4,SPTAN1,SWI5,TBC1D13,TRUB2,URM1,WDR34,ZDHHC12,ZER1"
TCGA.AG.A032.01A	9	131012347	141015884	1040	0.247	NEUTRAL	NA	189	Too-Many
TCGA.AG.4009.01A	9	131030647	131095713	22	0.2421	NEUTRAL	NA	4	"COQ4,GOLGA2,SWI5,TRUB2"
TCGA.AG.3909.01A	9	131048164	131337430	79	0.1461	NEUTRAL	NA	9	"CERCAM,COQ4,GLE1,ODF2,SLC27A4,SPTAN1,SWI5,TRUB2,URM1"
TCGA.AG.3611.01A	9	131084551	140851994	1304	0.1463	NEUTRAL	NA	186	Too-Many
TCGA.AG.A02X.01A	9	131117285	131760372	192	-0.3675	NEUTRAL	NA	19	"C9orf114,CCBL1,CERCAM,DOLK,ENDOG,GLE1,LRRC8A,NUP188,ODF2,PHYHD1,PKN3,SET,SLC27A4,SPTAN1,TBC1D13,URM1,WDR34,ZDHHC12,ZER1"
TCGA.AG.A00H.01A	9	131117669	141015884	1142	-0.1847	NEUTRAL	NA	184	Too-Many
TCGA.AA.A02R.01A	9	131117897	141009976	939	-0.1247	NEUTRAL	NA	184	Too-Many
TCGA.AA.A01I.01A	9	131185110	131757581	181	-0.3156	NEUTRAL	NA	17	"C9orf114,CCBL1,CERCAM,DOLK,ENDOG,GLE1,LRRC8A,NUP188,ODF2,PHYHD1,PKN3,SET,SPTAN1,TBC1D13,WDR34,ZDHHC12,ZER1"
TCGA.AA.A00N.01A	9	131190975	131337430	44	-0.1711	NEUTRAL	NA	4	"CERCAM,GLE1,ODF2,SPTAN1"
TCGA.AA.A01Q.01A	9	131196363	131231410	8	-0.2042	NEUTRAL	NA	2	"CERCAM,ODF2"
TCGA.AG.4009.01A	9	131196677	131277781	25	0.2738	NEUTRAL	NA	3	"CERCAM,GLE1,ODF2"
TCGA.AG.3906.01A	9	131197884	131402933	87	0.0568	NEUTRAL	NA	5	"CERCAM,GLE1,ODF2,SPTAN1,WDR34"
TCGA.CK.5914.01A	9	131233558	131331004	31	0.2974	NEUTRAL	NA	3	"GLE1,ODF2,SPTAN1"
TCGA.AA.A01Q.01A	9	131233558	131380254	65	0.2047	NEUTRAL	NA	3	"GLE1,ODF2,SPTAN1"
TCGA.AG.4009.01A	9	131284930	131300218	8	-0.0466	NEUTRAL	NA	1	GLE1
TCGA.AA.A00L.01A	9	131295743	140919412	1262	0.0646	NEUTRAL	NA	180	Too-Many
TCGA.AG.4009.01A	9	131301858	131340341	10	-0.278	NEUTRAL	NA	2	"GLE1,SPTAN1"
TCGA.AG.4009.01A	9	131341869	131402933	46	0.1286	NEUTRAL	NA	2	"SPTAN1,WDR34"
TCGA.AA.A010.01A	9	131341869	131418773	50	0.2612	NEUTRAL	NA	2	"SPTAN1,WDR34"
TCGA.AY.4070	9	131354910	141071474	2394	0.1299	NEUTRAL	NA	179	Too-Many
TCGA.AA.A01K.01A	9	131367272	141015884	965	-0.3337	NEUTRAL	NA	179	Too-Many
TCGA.CK.5914.01A	9	131381100	131446128	20	0.1722	NEUTRAL	NA	3	"SET,SPTAN1,WDR34"
TCGA.AA.A01Q.01A	9	131381100	131451812	20	-0.115	NEUTRAL	NA	3	"SET,SPTAN1,WDR34"
TCGA.AG.3909.01A	9	131383398	131731631	97	-0.1264	NEUTRAL	NA	14	"C9orf114,CCBL1,DOLK,ENDOG,LRRC8A,NUP188,PHYHD1,PKN3,SET,SPTAN1,TBC1D13,WDR34,ZDHHC12,ZER1"
TCGA.A6.3808.01A	9	131456835	135931352	687	-0.0977	NEUTRAL	NA	61	"ABL1,AIF1L,AK8,ASB6,ASS1,BARHL1,C9orf106,C9orf114,C9orf171,C9orf50,C9orf78,C9orf9,CCBL1,CRAT,DDX31,DOLK,DOLPP1,ENDOG,EXOSC2,FAM73B,FAM78A,FIBCD1,FNBP1,FUBP3,GFI1B,GPR107,GTF3C4,GTF3C5,HMCN2,IER5L,LAMC3,LRRC8A,MED27,NCS1,NTMT1,NTNG2,NUP188,NUP214,PHYHD1,PKN3,POMT1,PPAPDC3,PPP2R4,PRDM12,PRRC2B,PRRX2,PTGES,QRFP,RAPGEF1,SET,SETX,SH3GLB2,TBC1D13,TOR1A,TOR1B,TSC1,TTF1,UCK1,USP20,ZDHHC12,ZER1"
TCGA.AA.A00N.01A	9	131465115	131709929	77	-0.4015	NEUTRAL	NA	10	"C9orf114,CCBL1,DOLK,ENDOG,LRRC8A,PHYHD1,PKN3,TBC1D13,ZDHHC12,ZER1"
TCGA.AA.A01Q.01A	9	131467535	131477405	9	-0.0747	NEUTRAL	NA	1	PKN3
TCGA.CK.5914.01A	9	131467535	131721027	80	-0.0742	NEUTRAL	NA	11	"C9orf114,CCBL1,DOLK,ENDOG,LRRC8A,NUP188,PHYHD1,PKN3,TBC1D13,ZDHHC12,ZER1"
TCGA.AG.3906.01A	9	131467964	131512848	24	-0.1143	NEUTRAL	NA	3	"PKN3,ZDHHC12,ZER1"
TCGA.AG.A00C.01A	9	131468954	132515117	161	0.1118	NEUTRAL	NA	23	"ASB6,C9orf106,C9orf114,C9orf50,CCBL1,CRAT,DOLK,DOLPP1,ENDOG,FAM73B,IER5L,LRRC8A,NTMT1,NUP188,PHYHD1,PKN3,PPP2R4,PRRX2,PTGES,SH3GLB2,TBC1D13,ZDHHC12,ZER1"
TCGA.AG.4009.01A	9	131475324	131497566	15	-0.0042	NEUTRAL	NA	3	"PKN3,ZDHHC12,ZER1"
TCGA.AA.A01Q.01A	9	131478979	131486202	9	-0.4981	NEUTRAL	NA	2	"PKN3,ZDHHC12"
TCGA.AA.A010.01A	9	131482422	131552937	22	0.1639	NEUTRAL	NA	4	"PKN3,TBC1D13,ZDHHC12,ZER1"
TCGA.AA.A01Q.01A	9	131503797	131570027	19	-0.2479	NEUTRAL	NA	2	"TBC1D13,ZER1"
TCGA.AG.4009.01A	9	131515445	131517635	3	0.1324	NEUTRAL	NA	1	ZER1
TCGA.AA.A01Q.01A	9	131591944	131755445	37	0.0133	NEUTRAL	NA	6	"C9orf114,CCBL1,DOLK,LRRC8A,NUP188,PHYHD1"
TCGA.AG.4009.01A	9	131595845	131832509	75	0.2107	NEUTRAL	NA	7	"CCBL1,DOLK,FAM73B,LRRC8A,NUP188,PHYHD1,SH3GLB2"
TCGA.AG.3906.01A	9	131599937	131776639	56	0.1888	NEUTRAL	NA	6	"CCBL1,DOLK,LRRC8A,NUP188,PHYHD1,SH3GLB2"
TCGA.AG.A01W.01A	9	131697909	132487866	66	-0.2299	NEUTRAL	NA	14	"ASB6,C9orf106,C9orf50,CRAT,DOLK,DOLPP1,FAM73B,IER5L,NTMT1,NUP188,PHYHD1,PPP2R4,PRRX2,SH3GLB2"
TCGA.AA.A010.01A	9	131711405	131744781	14	0.0665	NEUTRAL	NA	1	NUP188
TCGA.CK.5914.01A	9	131730747	131812064	48	0.3662	NEUTRAL	NA	3	"FAM73B,NUP188,SH3GLB2"
TCGA.AA.A00N.01A	9	131733020	131760372	18	0.0238	NEUTRAL	NA	1	NUP188
TCGA.AA.A00D.01A	9	131733020	131772860	33	-0.2034	NEUTRAL	NA	2	"NUP188,SH3GLB2"
TCGA.AA.A010.01A	9	131745142	131755445	8	-0.3831	NEUTRAL	NA	1	NUP188
TCGA.AA.A01Q.01A	9	131756586	131939099	71	-0.4471	NEUTRAL	NA	7	"CRAT,DOLPP1,FAM73B,IER5L,NUP188,PPP2R4,SH3GLB2"
TCGA.AG.A02X.01A	9	131761871	136584010	592	-0.3889	NEUTRAL	NA	71	"ABL1,ABO,ADAMTS13,ADAMTSL2,AIF1L,AK8,ASB6,ASS1,BARHL1,C9orf106,C9orf171,C9orf50,C9orf78,C9orf9,CACFD1,CEL,CRAT,DBH,DDX31,DOLPP1,EXOSC2,FAM163B,FAM73B,FAM78A,FIBCD1,FNBP1,FUBP3,GBGT1,GFI1B,GPR107,GTF3C4,GTF3C5,HMCN2,IER5L,LAMC3,MED22,MED27,NCS1,NTMT1,NTNG2,NUP188,NUP214,OBP2B,POMT1,PPAPDC3,PPP2R4,PRDM12,PRRC2B,PRRX2,PTGES,QRFP,RALGDS,RAPGEF1,REXO4,RPL7A,SARDH,SETX,SH3GLB2,SLC2A6,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,TOR1A,TOR1B,TSC1,TTF1,UCK1,USP20"
TCGA.AA.A01D.01A	9	131761871	141015884	758	-0.1359	NEUTRAL	NA	166	Too-Many
TCGA.AA.A01I.01A	9	131763771	141015884	951	-0.3424	NEUTRAL	NA	166	Too-Many
TCGA.AG.3909.01A	9	131772365	131825402	12	0.204	NEUTRAL	NA	2	"FAM73B,SH3GLB2"
TCGA.AA.3861.01A	9	131774490	135977297	553	-0.3554	NEUTRAL	NA	51	"ABL1,AIF1L,AK8,ASB6,ASS1,BARHL1,C9orf106,C9orf171,C9orf50,C9orf78,C9orf9,CEL,CRAT,DDX31,DOLPP1,EXOSC2,FAM73B,FAM78A,FIBCD1,FNBP1,FUBP3,GFI1B,GPR107,GTF3C4,GTF3C5,HMCN2,IER5L,LAMC3,MED27,NCS1,NTMT1,NTNG2,NUP214,POMT1,PPAPDC3,PPP2R4,PRDM12,PRRC2B,PRRX2,PTGES,QRFP,RALGDS,RAPGEF1,SETX,SH3GLB2,TOR1A,TOR1B,TSC1,TTF1,UCK1,USP20"
TCGA.AA.A00D.01A	9	131774490	140943612	990	0.1348	NEUTRAL	NA	165	Too-Many
TCGA.AA.A00N.01A	9	131776998	132565480	77	-0.3723	NEUTRAL	NA	13	"ASB6,C9orf106,C9orf50,CRAT,DOLPP1,FAM73B,IER5L,NTMT1,PPP2R4,PRRX2,PTGES,SH3GLB2,TOR1B"
TCGA.CK.5914.01A	9	131821414	132515117	65	-0.1996	NEUTRAL	NA	11	"ASB6,C9orf106,C9orf50,CRAT,DOLPP1,FAM73B,IER5L,NTMT1,PPP2R4,PRRX2,PTGES"
TCGA.AA.A010.01A	9	131822792	131843362	9	0.2464	NEUTRAL	NA	1	FAM73B
TCGA.AA.A01F.01A	9	131825402	136219260	416	-0.2368	NEUTRAL	NA	57	"ABL1,ABO,AIF1L,AK8,ASB6,ASS1,BARHL1,C9orf106,C9orf171,C9orf50,C9orf78,C9orf9,CEL,CRAT,DDX31,DOLPP1,EXOSC2,FAM73B,FAM78A,FIBCD1,FNBP1,FUBP3,GBGT1,GFI1B,GPR107,GTF3C4,GTF3C5,HMCN2,IER5L,LAMC3,MED22,MED27,NCS1,NTMT1,NTNG2,NUP214,OBP2B,POMT1,PPAPDC3,PPP2R4,PRDM12,PRRC2B,PRRX2,PTGES,QRFP,RALGDS,RAPGEF1,RPL7A,SETX,SURF1,SURF6,TOR1A,TOR1B,TSC1,TTF1,UCK1,USP20"
TCGA.AG.3909.01A	9	131825779	132375369	38	-0.0665	NEUTRAL	NA	8	"C9orf106,C9orf50,CRAT,DOLPP1,FAM73B,IER5L,NTMT1,PPP2R4"
TCGA.AG.3906.01A	9	131832509	135929734	454	-0.0559	NEUTRAL	NA	48	"ABL1,AIF1L,AK8,ASB6,ASS1,BARHL1,C9orf106,C9orf171,C9orf50,C9orf78,C9orf9,CRAT,DDX31,DOLPP1,EXOSC2,FAM73B,FAM78A,FIBCD1,FNBP1,FUBP3,GFI1B,GPR107,GTF3C4,GTF3C5,HMCN2,IER5L,LAMC3,MED27,NCS1,NTMT1,NTNG2,NUP214,POMT1,PPAPDC3,PPP2R4,PRDM12,PRRC2B,PRRX2,PTGES,QRFP,RAPGEF1,SETX,TOR1A,TOR1B,TSC1,TTF1,UCK1,USP20"
TCGA.AA.A010.01A	9	131846907	131859463	9	-0.4261	NEUTRAL	NA	2	"CRAT,DOLPP1"
TCGA.AG.4009.01A	9	131846907	132584813	55	-0.3654	NEUTRAL	NA	12	"ASB6,C9orf106,C9orf50,CRAT,DOLPP1,IER5L,NTMT1,PPP2R4,PRRX2,PTGES,TOR1A,TOR1B"
TCGA.AA.A010.01A	9	131898703	132620719	48	-0.4452	NEUTRAL	NA	12	"ASB6,C9orf106,C9orf50,C9orf78,IER5L,NTMT1,PPP2R4,PRRX2,PTGES,TOR1A,TOR1B,USP20"
TCGA.DM.A28G	9	132070510	141071474	2296	0.0127	NEUTRAL	NA	159	Too-Many
TCGA.G4.6302	9	132170672	141071474	2268	-0.0355	NEUTRAL	NA	158	Too-Many
TCGA.AG.3909.01A	9	132404117	132515117	6	0.1688	NEUTRAL	NA	3	"ASB6,PRRX2,PTGES"
TCGA.AA.A01Q.01A	9	132481480	132515117	6	0.0177	NEUTRAL	NA	2	"PRRX2,PTGES"
TCGA.AG.A01W.01A	9	132579488	132758616	13	0.1828	NEUTRAL	NA	4	"C9orf78,FNBP1,TOR1A,USP20"
TCGA.AG.A025.01A	9	132584813	141107424	999	-0.2612	NEUTRAL	NA	153	Too-Many
TCGA.AA.A01Q.01A	9	132586190	132595662	6	-0.3698	NEUTRAL	NA	2	"C9orf78,TOR1A"
TCGA.AG.4009.01A	9	132590386	135933150	400	0.0842	NEUTRAL	NA	35	"ABL1,AIF1L,AK8,ASS1,BARHL1,C9orf171,C9orf78,C9orf9,DDX31,EXOSC2,FAM78A,FIBCD1,FNBP1,FUBP3,GFI1B,GPR107,GTF3C4,GTF3C5,HMCN2,LAMC3,MED27,NCS1,NTNG2,NUP214,POMT1,PPAPDC3,PRDM12,PRRC2B,QRFP,RAPGEF1,SETX,TSC1,TTF1,UCK1,USP20"
TCGA.AG.A00C.01A	9	132596919	133355049	67	-0.0365	NEUTRAL	NA	7	"ASS1,C9orf78,FNBP1,GPR107,HMCN2,NCS1,USP20"
TCGA.CK.5914.01A	9	132597368	132665101	26	0.1457	NEUTRAL	NA	3	"C9orf78,FNBP1,USP20"
TCGA.AA.A00N.01A	9	132597368	132980059	61	-0.0169	NEUTRAL	NA	5	"C9orf78,FNBP1,GPR107,NCS1,USP20"
TCGA.AA.A010.01A	9	132623168	133540003	137	0.2642	NEUTRAL	NA	8	"ASS1,FNBP1,FUBP3,GPR107,HMCN2,NCS1,PRDM12,USP20"
TCGA.AG.3909.01A	9	132641801	133333737	45	0.3056	NEUTRAL	NA	6	"ASS1,FNBP1,GPR107,HMCN2,NCS1,USP20"
TCGA.AG.3883	9	132720868	133247384	92	-0.1918	NEUTRAL	NA	4	"FNBP1,GPR107,HMCN2,NCS1"
TCGA.AG.A01W.01A	9	132769266	132985416	32	-0.4684	NEUTRAL	NA	3	"FNBP1,GPR107,NCS1"
TCGA.AA.A01Q.01A	9	132837868	132854500	8	-0.1256	NEUTRAL	NA	1	GPR107
TCGA.AA.A01Q.01A	9	132861697	132988621	16	-0.4464	NEUTRAL	NA	2	"GPR107,NCS1"
TCGA.AZ.4684.01A	9	132890907	141109683	1483	-0.0472	NEUTRAL	NA	149	Too-Many
TCGA.AA.3509.01A	9	132897272	141109683	1482	-0.1309	NEUTRAL	NA	149	Too-Many
TCGA.AG.A01W.01A	9	132990849	138406736	730	0.0136	NEUTRAL	NA	64	"ABL1,ABO,ADAMTS13,ADAMTSL2,AIF1L,AK8,ASS1,BARHL1,BRD3,C9orf116,C9orf171,C9orf62,C9orf9,CACFD1,CEL,COL5A1,DBH,DDX31,EXOSC2,FAM163B,FAM78A,FCN1,FCN2,FIBCD1,FUBP3,GBGT1,GFI1B,GTF3C4,GTF3C5,HMCN2,LAMC3,MED22,MED27,MRPS2,NCS1,NTNG2,NUP214,OBP2B,OLFM1,POMT1,PPAPDC3,PPP1R26,PRDM12,PRRC2B,QRFP,RALGDS,RAPGEF1,REXO4,RPL7A,RXRA,SARDH,SETX,SLC2A6,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,TSC1,TTF1,UCK1,VAV2,WDR5"
TCGA.CK.5914.01A	9	133066987	133569141	71	-0.1793	NEUTRAL	NA	4	"ASS1,FUBP3,HMCN2,PRDM12"
TCGA.AA.A00N.01A	9	133233729	133355708	28	-0.0814	NEUTRAL	NA	2	"ASS1,HMCN2"
TCGA.AG.3883	9	133247452	133481911	81	0.1203	NEUTRAL	NA	3	"ASS1,FUBP3,HMCN2"
TCGA.AA.3819	9	133276018	141071474	2024	0.0322	NEUTRAL	NA	146	Too-Many
TCGA.AG.A00C.01A	9	133355708	133730151	36	0.2984	NEUTRAL	NA	5	"ABL1,ASS1,EXOSC2,FUBP3,PRDM12"
TCGA.AG.3883	9	133483216	135840534	712	-0.2296	NEUTRAL	NA	27	"ABL1,AIF1L,AK8,BARHL1,C9orf171,C9orf9,DDX31,EXOSC2,FAM78A,FIBCD1,FUBP3,GFI1B,GTF3C4,LAMC3,MED27,NTNG2,NUP214,POMT1,PPAPDC3,PRDM12,PRRC2B,QRFP,RAPGEF1,SETX,TSC1,TTF1,UCK1"
TCGA.AA.3862.01A	9	133498946	136028917	358	-0.0208	NEUTRAL	NA	31	"ABL1,AIF1L,AK8,BARHL1,C9orf171,C9orf9,CEL,DDX31,EXOSC2,FAM78A,FIBCD1,FUBP3,GBGT1,GFI1B,GTF3C4,GTF3C5,LAMC3,MED27,NTNG2,NUP214,POMT1,PPAPDC3,PRDM12,PRRC2B,QRFP,RALGDS,RAPGEF1,SETX,TSC1,TTF1,UCK1"
TCGA.AA.A01Q.01A	9	133501713	134007916	70	-0.2664	NEUTRAL	NA	9	"ABL1,AIF1L,EXOSC2,FIBCD1,FUBP3,LAMC3,NUP214,PRDM12,QRFP"
TCGA.AA.A00N.01A	9	133710785	133920859	26	-0.1825	NEUTRAL	NA	4	"ABL1,FIBCD1,LAMC3,QRFP"
TCGA.AG.3909.01A	9	133729448	133920859	20	-0.0507	NEUTRAL	NA	4	"ABL1,FIBCD1,LAMC3,QRFP"
TCGA.AA.A010.01A	9	133738123	134108756	85	0.2205	NEUTRAL	NA	6	"ABL1,AIF1L,FIBCD1,LAMC3,NUP214,QRFP"
TCGA.AG.A00C.01A	9	133738123	134371098	112	0.002	NEUTRAL	NA	9	"ABL1,AIF1L,FAM78A,FIBCD1,LAMC3,NUP214,PPAPDC3,PRRC2B,QRFP"
TCGA.CK.5914.01A	9	133753750	133945022	27	-0.0734	NEUTRAL	NA	4	"ABL1,FIBCD1,LAMC3,QRFP"
TCGA.AA.A00N.01A	9	133960884	133971933	4	-0.1342	NEUTRAL	NA	2	"AIF1L,LAMC3"
TCGA.CK.5914.01A	9	133986937	134011259	14	-0.3484	NEUTRAL	NA	2	"AIF1L,NUP214"
TCGA.AA.A01Q.01A	9	134008444	134070549	21	0.2882	NEUTRAL	NA	1	NUP214
TCGA.AG.3909.01A	9	134014656	134346178	46	0.3542	NEUTRAL	NA	4	"FAM78A,NUP214,PPAPDC3,PRRC2B"
TCGA.AA.A00N.01A	9	134019628	134366762	63	0.3168	NEUTRAL	NA	4	"FAM78A,NUP214,PPAPDC3,PRRC2B"
TCGA.AA.A00F.01A	9	134076979	134108756	7	-0.1606	NEUTRAL	NA	1	NUP214
TCGA.AA.A01Q.01A	9	134076979	134108756	7	0.2862	NEUTRAL	NA	1	NUP214
TCGA.CK.5914.01A	9	134136227	134305483	8	-0.347	NEUTRAL	NA	3	"FAM78A,PPAPDC3,PRRC2B"
TCGA.AA.A00F.01A	9	134136227	135804107	145	0.1152	NEUTRAL	NA	17	"AK8,BARHL1,C9orf171,C9orf9,DDX31,FAM78A,GTF3C4,MED27,NTNG2,POMT1,PPAPDC3,PRRC2B,RAPGEF1,SETX,TSC1,TTF1,UCK1"
TCGA.G4.6322	9	134138068	141071474	1777	-0.0727	NEUTRAL	NA	135	Too-Many
TCGA.AA.A01Q.01A	9	134307954	134363205	17	0.2784	NEUTRAL	NA	1	PRRC2B
TCGA.AA.A010.01A	9	134311959	134330411	7	-0.213	NEUTRAL	NA	1	PRRC2B
TCGA.CK.5914.01A	9	134348857	134367501	18	0.0626	NEUTRAL	NA	1	PRRC2B
TCGA.AY.A71X	9	134362303	141071474	1717	-0.1534	NEUTRAL	NA	133	Too-Many
TCGA.AA.A010.01A	9	134367501	134463084	31	-0.4668	NEUTRAL	NA	4	"POMT1,PRRC2B,RAPGEF1,UCK1"
TCGA.CK.5914.01A	9	134369733	134471636	33	-0.4844	NEUTRAL	NA	4	"POMT1,PRRC2B,RAPGEF1,UCK1"
TCGA.AA.A00Q.01A	9	134379559	134393556	11	-0.3427	NEUTRAL	NA	1	POMT1
TCGA.AA.A00Q.01A	9	134394175	136083489	177	0.0904	NEUTRAL	NA	20	"AK8,BARHL1,C9orf171,C9orf9,CEL,DDX31,GBGT1,GFI1B,GTF3C4,GTF3C5,MED27,NTNG2,OBP2B,POMT1,RALGDS,RAPGEF1,SETX,TSC1,TTF1,UCK1"
TCGA.AG.A00C.01A	9	134394175	136131005	200	0.0216	NEUTRAL	NA	21	"ABO,AK8,BARHL1,C9orf171,C9orf9,CEL,DDX31,GBGT1,GFI1B,GTF3C4,GTF3C5,MED27,NTNG2,OBP2B,POMT1,RALGDS,RAPGEF1,SETX,TSC1,TTF1,UCK1"
TCGA.AA.A017.01A	9	134395420	141015884	566	-0.1481	NEUTRAL	NA	132	Too-Many
TCGA.AA.A00N.01A	9	134406407	134473559	11	0.2374	NEUTRAL	NA	2	"RAPGEF1,UCK1"
TCGA.AA.A01Q.01A	9	134406407	135866212	134	-0.0659	NEUTRAL	NA	14	"AK8,BARHL1,C9orf171,C9orf9,DDX31,GFI1B,GTF3C4,MED27,NTNG2,RAPGEF1,SETX,TSC1,TTF1,UCK1"
TCGA.AG.3909.01A	9	134455613	134480291	11	0.0149	NEUTRAL	NA	1	RAPGEF1
TCGA.AA.A010.01A	9	134464136	135926131	154	0.2455	NEUTRAL	NA	14	"AK8,BARHL1,C9orf171,C9orf9,DDX31,GFI1B,GTF3C4,GTF3C5,MED27,NTNG2,RAPGEF1,SETX,TSC1,TTF1"
TCGA.CK.5914.01A	9	134473559	135750448	114	0.1884	NEUTRAL	NA	10	"AK8,BARHL1,C9orf171,DDX31,GTF3C4,MED27,NTNG2,RAPGEF1,SETX,TTF1"
TCGA.AA.A00N.01A	9	134612696	135206667	37	0.0406	NEUTRAL	NA	4	"MED27,NTNG2,RAPGEF1,SETX"
TCGA.AG.3909.01A	9	134612696	135206667	34	0.1258	NEUTRAL	NA	4	"MED27,NTNG2,RAPGEF1,SETX"
TCGA.AG.3909.01A	9	135209945	135470216	26	-0.287	NEUTRAL	NA	5	"BARHL1,C9orf171,DDX31,SETX,TTF1"
TCGA.AA.A00N.01A	9	135209945	135804107	87	-0.3838	NEUTRAL	NA	9	"AK8,BARHL1,C9orf171,C9orf9,DDX31,GTF3C4,SETX,TSC1,TTF1"
TCGA.AG.3909.01A	9	135487426	135527771	13	0.3124	NEUTRAL	NA	1	DDX31
TCGA.AA.3844	9	135524763	135525078	3	-0.4281	NEUTRAL	NA	1	DDX31
TCGA.AG.3909.01A	9	135533994	135564204	10	-0.4323	NEUTRAL	NA	2	"DDX31,GTF3C4"
TCGA.AG.3909.01A	9	135601033	135985635	73	0.2156	NEUTRAL	NA	7	"AK8,C9orf9,CEL,GFI1B,GTF3C5,RALGDS,TSC1"
TCGA.AG.3883	9	135840944	136618715	204	0.1151	NEUTRAL	NA	23	"ABO,ADAMTS13,ADAMTSL2,CACFD1,CEL,DBH,FAM163B,GBGT1,GFI1B,GTF3C5,MED22,OBP2B,RALGDS,REXO4,RPL7A,SARDH,SLC2A6,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C"
TCGA.AA.A00F.01A	9	135862014	135866212	6	-0.2459	NEUTRAL	NA	1	GFI1B
TCGA.DM.A28A	9	135880468	139326815	1011	0.1958	NEUTRAL	NA	54	"ABO,ADAMTS13,ADAMTSL2,BRD3,C9orf116,C9orf62,C9orf69,CACFD1,CAMSAP1,CARD9,CEL,COL5A1,DBH,DNLZ,FAM163B,FCN1,FCN2,GBGT1,GLT6D1,GPSM1,GTF3C5,INPP5E,KCNT1,LCN1,LCN9,LHX3,MED22,MRPS2,NACC2,OBP2A,OBP2B,OLFM1,PAEP,PMPCA,PPP1R26,QSOX2,RALGDS,REXO4,RPL7A,RXRA,SARDH,SDCCAG3,SLC2A6,SNAPC4,SOHLH1,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,UBAC1,VAV2,WDR5"
TCGA.AA.A00N.01A	9	135895695	135942443	18	-0.1416	NEUTRAL	NA	2	"CEL,GTF3C5"
TCGA.AA.A00F.01A	9	135906200	136217036	52	0.143	NEUTRAL	NA	9	"ABO,CEL,GBGT1,GTF3C5,MED22,OBP2B,RALGDS,RPL7A,SURF6"
TCGA.CK.5914.01A	9	135927399	136215559	70	-0.1527	NEUTRAL	NA	9	"ABO,CEL,GBGT1,GTF3C5,MED22,OBP2B,RALGDS,RPL7A,SURF6"
TCGA.AG.4009.01A	9	136081220	136103257	11	0.2678	NEUTRAL	NA	1	OBP2B
TCGA.AA.A00N.01A	9	136081220	136131005	13	0.17	NEUTRAL	NA	2	"ABO,OBP2B"
TCGA.AA.A010.01A	9	136081220	136131005	13	0.2914	NEUTRAL	NA	2	"ABO,OBP2B"
TCGA.AA.A01Q.01A	9	136081220	136216715	29	-0.1423	NEUTRAL	NA	5	"ABO,MED22,OBP2B,RPL7A,SURF6"
TCGA.AG.3906.01A	9	136081220	136916637	164	-0.1819	NEUTRAL	NA	20	"ABO,ADAMTS13,ADAMTSL2,BRD3,CACFD1,DBH,FAM163B,MED22,OBP2B,REXO4,RPL7A,SARDH,SLC2A6,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,VAV2"
TCGA.AG.3909.01A	9	136084454	136103833	7	0.1926	NEUTRAL	NA	1	OBP2B
TCGA.AA.A010.01A	9	136198698	136208303	6	0.1203	NEUTRAL	NA	2	"MED22,SURF6"
TCGA.AA.A00Q.01A	9	136198698	140943612	651	0.176	NEUTRAL	NA	111	Too-Many
TCGA.AA.A024.01A	9	136201181	140476948	523	0.3043	NEUTRAL	NA	108	Too-Many
TCGA.AA.A01F.01A	9	136224537	139279128	346	-0.1569	NEUTRAL	NA	41	"ADAMTS13,ADAMTSL2,BRD3,C9orf116,C9orf62,C9orf69,CACFD1,CAMSAP1,CARD9,COL5A1,DBH,DNLZ,FAM163B,FCN1,FCN2,GLT6D1,GPSM1,KCNT1,LCN1,LCN9,LHX3,MRPS2,NACC2,OBP2A,OLFM1,PAEP,PPP1R26,QSOX2,REXO4,RXRA,SARDH,SLC2A6,SNAPC4,SOHLH1,STKLD1,SURF2,SURF4,TMEM8C,UBAC1,VAV2,WDR5"
TCGA.CK.5914.01A	9	136233417	137004963	160	-0.2251	NEUTRAL	NA	14	"ADAMTS13,ADAMTSL2,BRD3,CACFD1,DBH,FAM163B,REXO4,SARDH,SLC2A6,STKLD1,SURF4,TMEM8C,VAV2,WDR5"
TCGA.AG.3909.01A	9	136233417	137623849	159	-0.3104	NEUTRAL	NA	16	"ADAMTS13,ADAMTSL2,BRD3,CACFD1,COL5A1,DBH,FAM163B,REXO4,RXRA,SARDH,SLC2A6,STKLD1,SURF4,TMEM8C,VAV2,WDR5"
TCGA.AG.A00C.01A	9	136249574	136915456	107	0.0232	NEUTRAL	NA	12	"ADAMTS13,ADAMTSL2,BRD3,CACFD1,DBH,FAM163B,REXO4,SARDH,SLC2A6,STKLD1,TMEM8C,VAV2"
TCGA.AA.A01Q.01A	9	136251341	136321644	43	-0.0452	NEUTRAL	NA	3	"ADAMTS13,REXO4,STKLD1"
TCGA.AA.A00F.01A	9	136251341	139286964	331	0.1327	NEUTRAL	NA	39	"ADAMTS13,ADAMTSL2,BRD3,C9orf116,C9orf62,C9orf69,CACFD1,CAMSAP1,CARD9,COL5A1,DBH,DNLZ,FAM163B,FCN1,FCN2,GLT6D1,GPSM1,KCNT1,LCN1,LCN9,LHX3,MRPS2,NACC2,OBP2A,OLFM1,PAEP,PPP1R26,QSOX2,REXO4,RXRA,SARDH,SLC2A6,SNAPC4,SOHLH1,STKLD1,TMEM8C,UBAC1,VAV2,WDR5"
TCGA.AA.A00N.01A	9	136262261	136272026	9	-0.0828	NEUTRAL	NA	2	"REXO4,STKLD1"
TCGA.A6.3808.01A	9	136262261	136899776	138	-0.3	NEUTRAL	NA	12	"ADAMTS13,ADAMTSL2,BRD3,CACFD1,DBH,FAM163B,REXO4,SARDH,SLC2A6,STKLD1,TMEM8C,VAV2"
TCGA.AA.A010.01A	9	136263040	136399816	62	-0.2673	NEUTRAL	NA	7	"ADAMTS13,ADAMTSL2,CACFD1,REXO4,SLC2A6,STKLD1,TMEM8C"
TCGA.D5.6531	9	136267868	136707234	115	-0.2043	NEUTRAL	NA	11	"ADAMTS13,ADAMTSL2,CACFD1,DBH,FAM163B,REXO4,SARDH,SLC2A6,STKLD1,TMEM8C,VAV2"
TCGA.AA.A00N.01A	9	136289399	136412113	53	-0.324	NEUTRAL	NA	5	"ADAMTS13,ADAMTSL2,CACFD1,SLC2A6,TMEM8C"
TCGA.AA.A00A.01A	9	136305418	136677199	80	0.0158	NEUTRAL	NA	9	"ADAMTS13,ADAMTSL2,CACFD1,DBH,FAM163B,SARDH,SLC2A6,TMEM8C,VAV2"
TCGA.AG.4009.01A	9	136341308	137004963	78	0.0936	NEUTRAL	NA	9	"ADAMTSL2,BRD3,DBH,FAM163B,SARDH,SLC2A6,TMEM8C,VAV2,WDR5"
TCGA.AA.A00N.01A	9	136419540	136573357	25	0.1363	NEUTRAL	NA	4	"ADAMTSL2,DBH,FAM163B,SARDH"
TCGA.AA.A010.01A	9	136501465	136804196	62	0.0407	NEUTRAL	NA	3	"DBH,SARDH,VAV2"
TCGA.AA.3967.01A	9	136509308	136577710	18	-0.2035	NEUTRAL	NA	2	"DBH,SARDH"
TCGA.AA.3967.01A	9	136578102	140707411	620	0.2203	NEUTRAL	NA	95	"ABCA2,AGPAT2,ANAPC2,ARRDC1,BRD3,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,RXRA,SAPCD2,SARDH,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,VAV2,WDR5,ZMYND19"
TCGA.AA.3976	9	136586262	141071474	1045	0.2549	NEUTRAL	NA	96	"ABCA2,AGPAT2,ANAPC2,ARRDC1,BRD3,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,RXRA,SAPCD2,SARDH,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,VAV2,WDR5,ZMYND19"
TCGA.AG.A02X.01A	9	136597507	141015884	429	-0.4722	NEUTRAL	NA	96	"ABCA2,AGPAT2,ANAPC2,ARRDC1,BRD3,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,RXRA,SAPCD2,SARDH,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,VAV2,WDR5,ZMYND19"
TCGA.DM.A28F	9	136617804	141011580	1025	0.2936	NEUTRAL	NA	95	"ABCA2,AGPAT2,ANAPC2,ARRDC1,BRD3,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,RXRA,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,VAV2,WDR5,ZMYND19"
TCGA.AG.3883	9	136638457	141071474	1025	0.0664	NEUTRAL	NA	95	"ABCA2,AGPAT2,ANAPC2,ARRDC1,BRD3,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,RXRA,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,VAV2,WDR5,ZMYND19"
TCGA.AG.3891.01A	9	136649422	136916637	24	-0.238	NEUTRAL	NA	2	"BRD3,VAV2"
TCGA.AA.A00A.01A	9	136699329	137007047	17	-0.3403	NEUTRAL	NA	3	"BRD3,VAV2,WDR5"
TCGA.D5.6531	9	136707729	137781465	341	0.0571	NEUTRAL	NA	6	"BRD3,COL5A1,FCN2,RXRA,VAV2,WDR5"
TCGA.AM.5820	9	136936636	136986910	14	-0.1294	NEUTRAL	NA	0	None
TCGA.AA.A00A.01A	9	137007443	137646098	30	0.0805	NEUTRAL	NA	3	"COL5A1,RXRA,WDR5"
TCGA.AG.3891.01A	9	137017039	137630254	24	-0.1025	NEUTRAL	NA	3	"COL5A1,RXRA,WDR5"
TCGA.AG.3906.01A	9	137017039	138011333	86	-0.3305	NEUTRAL	NA	6	"COL5A1,FCN1,FCN2,OLFM1,RXRA,WDR5"
TCGA.AG.A008.01A	9	137022976	138838077	144	0.1566	NEUTRAL	NA	19	"C9orf116,C9orf62,CAMSAP1,COL5A1,FCN1,FCN2,GLT6D1,KCNT1,LCN1,LCN9,MRPS2,OBP2A,OLFM1,PAEP,PPP1R26,RXRA,SOHLH1,UBAC1,WDR5"
TCGA.AA.A010.01A	9	137218395	137809567	88	0.0328	NEUTRAL	NA	4	"COL5A1,FCN1,FCN2,RXRA"
TCGA.AG.A00C.01A	9	137293489	137642596	17	0.0603	NEUTRAL	NA	2	"COL5A1,RXRA"
TCGA.AA.A00N.01A	9	137293489	137733961	70	-0.2237	NEUTRAL	NA	2	"COL5A1,RXRA"
TCGA.AG.4009.01A	9	137293489	137809567	76	0.2448	NEUTRAL	NA	4	"COL5A1,FCN1,FCN2,RXRA"
TCGA.CK.5914.01A	9	137299964	139278071	256	-0.2746	NEUTRAL	NA	26	"C9orf116,C9orf62,C9orf69,CAMSAP1,CARD9,COL5A1,DNLZ,FCN1,FCN2,GLT6D1,GPSM1,KCNT1,LCN1,LCN9,LHX3,MRPS2,NACC2,OBP2A,OLFM1,PAEP,PPP1R26,QSOX2,RXRA,SNAPC4,SOHLH1,UBAC1"
TCGA.AA.A01Q.01A	9	137320922	137630533	14	-0.4603	NEUTRAL	NA	2	"COL5A1,RXRA"
TCGA.A6.3808.01A	9	137620487	137979789	77	-0.0195	NEUTRAL	NA	4	"COL5A1,FCN1,FCN2,OLFM1"
TCGA.AA.A01Q.01A	9	137642329	137688632	24	0.0902	NEUTRAL	NA	1	COL5A1
TCGA.AG.A00C.01A	9	137644385	137707710	28	-0.3451	NEUTRAL	NA	1	COL5A1
TCGA.AG.3891.01A	9	137658226	138376310	54	-0.0044	NEUTRAL	NA	6	"C9orf62,COL5A1,FCN1,FCN2,OLFM1,PPP1R26"
TCGA.AA.A00A.01A	9	137660181	140732818	389	-0.0208	NEUTRAL	NA	90	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.AA.3862.01A	9	137688154	141009976	574	-0.377	NEUTRAL	NA	91	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.AA.A01Q.01A	9	137690179	137706591	11	-0.4105	NEUTRAL	NA	1	COL5A1
TCGA.AG.3909.01A	9	137693730	139342001	179	-0.2444	NEUTRAL	NA	29	"C9orf116,C9orf62,C9orf69,CAMSAP1,CARD9,COL5A1,DNLZ,FCN1,FCN2,GLT6D1,GPSM1,INPP5E,KCNT1,LCN1,LCN9,LHX3,MRPS2,NACC2,OBP2A,OLFM1,PAEP,PMPCA,PPP1R26,QSOX2,SDCCAG3,SEC16A,SNAPC4,SOHLH1,UBAC1"
TCGA.AG.A00C.01A	9	137708802	137987662	30	0.0415	NEUTRAL	NA	4	"COL5A1,FCN1,FCN2,OLFM1"
TCGA.AA.A01Q.01A	9	137772616	138774645	101	-0.2253	NEUTRAL	NA	15	"C9orf116,C9orf62,CAMSAP1,FCN1,FCN2,GLT6D1,KCNT1,LCN1,LCN9,MRPS2,OBP2A,OLFM1,PAEP,PPP1R26,SOHLH1"
TCGA.D5.6531	9	137786802	141071474	659	0.0893	NEUTRAL	NA	89	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.AG.4015	9	137968825	138391298	170	-0.0843	NEUTRAL	NA	4	"C9orf116,C9orf62,OLFM1,PPP1R26"
TCGA.AA.A010.01A	9	137998548	138235871	4	-0.2726	NEUTRAL	NA	2	"C9orf62,OLFM1"
TCGA.AM.5820	9	138316524	138342268	12	-0.2142	NEUTRAL	NA	0	None
TCGA.AG.3891.01A	9	138378799	139298467	121	-0.0236	NEUTRAL	NA	21	"C9orf116,C9orf69,CAMSAP1,CARD9,DNLZ,GLT6D1,GPSM1,KCNT1,LCN1,LCN9,LHX3,MRPS2,NACC2,OBP2A,PAEP,PPP1R26,QSOX2,SDCCAG3,SNAPC4,SOHLH1,UBAC1"
TCGA.AA.A010.01A	9	138391507	138557474	31	-0.095	NEUTRAL	NA	7	"C9orf116,GLT6D1,LCN1,LCN9,MRPS2,OBP2A,PAEP"
TCGA.AG.3906.01A	9	138393639	138839614	63	-0.2345	NEUTRAL	NA	10	"CAMSAP1,GLT6D1,KCNT1,LCN1,LCN9,MRPS2,OBP2A,PAEP,SOHLH1,UBAC1"
TCGA.AG.3902	9	138403705	138407070	7	-0.4229	NEUTRAL	NA	0	None
TCGA.AG.4015	9	138403705	141071474	403	-0.0119	NEUTRAL	NA	83	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,PAEP,PHPT1,PMPCA,PNPLA7,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.AG.3902	9	138410371	141071474	396	0.3476	NEUTRAL	NA	83	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,PAEP,PHPT1,PMPCA,PNPLA7,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.A6.3808.01A	9	138413309	138557064	26	-0.1016	NEUTRAL	NA	5	"GLT6D1,LCN1,LCN9,OBP2A,PAEP"
TCGA.AG.4009.01A	9	138413309	138839614	67	0.0556	NEUTRAL	NA	9	"CAMSAP1,GLT6D1,KCNT1,LCN1,LCN9,OBP2A,PAEP,SOHLH1,UBAC1"
TCGA.AG.A01L.01A	9	138454088	138669135	24	-0.2383	NEUTRAL	NA	5	"GLT6D1,KCNT1,LCN9,PAEP,SOHLH1"
TCGA.AM.5820	9	138523075	138542899	20	-0.1481	NEUTRAL	NA	1	GLT6D1
TCGA.AA.A010.01A	9	138660439	138706894	20	-0.4679	NEUTRAL	NA	2	"CAMSAP1,KCNT1"
TCGA.AG.A01L.01A	9	138670497	139275723	38	0.0862	NEUTRAL	NA	11	"C9orf69,CAMSAP1,CARD9,DNLZ,GPSM1,KCNT1,LHX3,NACC2,QSOX2,SNAPC4,UBAC1"
TCGA.A6.3808.01A	9	138683599	138839614	25	0.3737	NEUTRAL	NA	3	"CAMSAP1,KCNT1,UBAC1"
TCGA.AM.5820	9	138687109	138864087	32	0.2913	NEUTRAL	NA	2	"CAMSAP1,UBAC1"
TCGA.SS.A7HO	9	138717387	141071474	315	-0.0346	NEUTRAL	NA	76	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GPSM1,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.AG.3906.01A	9	138845461	139118573	15	0.3001	NEUTRAL	NA	5	"C9orf69,LHX3,NACC2,QSOX2,UBAC1"
TCGA.AG.4009.01A	9	138845461	139297201	39	-0.3526	NEUTRAL	NA	10	"C9orf69,CARD9,DNLZ,GPSM1,LHX3,NACC2,QSOX2,SDCCAG3,SNAPC4,UBAC1"
TCGA.AA.3864	9	138950569	141071474	270	0.2839	NEUTRAL	NA	74	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf69,CACNA1B,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GPSM1,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AA.3531	9	138999709	141071474	257	0.0348	NEUTRAL	NA	73	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf69,CACNA1B,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GPSM1,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AF.3914.01A	9	139118573	141015884	411	-0.2691	NEUTRAL	NA	71	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CACNA1B,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GPSM1,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AA.A01Q.01A	9	139228867	139305060	44	-0.2765	NEUTRAL	NA	6	"CARD9,DNLZ,GPSM1,PMPCA,SDCCAG3,SNAPC4"
TCGA.AG.3906.01A	9	139250133	139275723	8	-0.4817	NEUTRAL	NA	4	"CARD9,DNLZ,GPSM1,SNAPC4"
TCGA.AG.3906.01A	9	139276305	139292704	13	0.1547	NEUTRAL	NA	1	SNAPC4
TCGA.AA.A01F.01A	9	139288651	140943612	248	-0.0482	NEUTRAL	NA	67	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CACNA1B,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AA.A00O.01A	9	139308951	141015884	172	-0.2446	NEUTRAL	NA	65	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CACNA1B,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SEC16A,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AG.3891.01A	9	139311354	139362815	30	0.158	NEUTRAL	NA	3	"INPP5E,PMPCA,SEC16A"
TCGA.AG.A01L.01A	9	139311354	139913122	74	-0.0176	NEUTRAL	NA	28	"ABCA2,AGPAT2,C8G,C9orf142,C9orf163,C9orf172,CCDC183,CLIC3,EDF1,EGFL7,FAM69B,FBXW5,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,MAMDC4,NOTCH1,PHPT1,PMPCA,PTGDS,RABL6,SEC16A,TMEM141,TRAF2"
TCGA.AA.A00F.01A	9	139312967	140732818	236	0.1775	NEUTRAL	NA	64	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SEC16A,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AA.A01Q.01A	9	139327388	139571838	23	0.1528	NEUTRAL	NA	6	"AGPAT2,C9orf163,EGFL7,INPP5E,NOTCH1,SEC16A"
TCGA.AG.3906.01A	9	139342504	139697066	48	-0.0052	NEUTRAL	NA	12	"AGPAT2,C9orf163,CCDC183,EGFL7,FAM69B,LCN10,LCN15,LCN6,LCN8,NOTCH1,SEC16A,TMEM141"
TCGA.AG.A015.01A	9	139345666	139995898	73	-0.0658	NEUTRAL	NA	33	"ABCA2,AGPAT2,C8G,C9orf139,C9orf142,C9orf163,C9orf172,CCDC183,CLIC3,EDF1,EGFL7,ENTPD2,FAM69B,FBXW5,FUT7,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,MAMDC4,MAN1B1,NOTCH1,NPDC1,PHPT1,PTGDS,RABL6,SAPCD2,SEC16A,TMEM141,TRAF2,UAP1L1"
TCGA.DM.A28A	9	139347777	141071474	207	0.2196	NEUTRAL	NA	63	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CACNA1B,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SEC16A,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AA.A02H.01A	9	139347853	141015884	152	-0.1853	NEUTRAL	NA	63	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CACNA1B,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SEC16A,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AG.4009.01A	9	139350494	139357338	6	0.1086	NEUTRAL	NA	1	SEC16A
TCGA.AG.3891.01A	9	139366378	139413001	16	-0.407	NEUTRAL	NA	3	"C9orf163,NOTCH1,SEC16A"
TCGA.AG.A008.01A	9	139366378	141015884	258	0.2199	NEUTRAL	NA	63	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CACNA1B,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SEC16A,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.CK.5914.01A	9	139390556	140773454	429	-0.294	NEUTRAL	NA	61	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf172,C9orf173,CACNA1B,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AG.3909.01A	9	139394955	140638384	218	-4.00E-04	NEUTRAL	NA	60	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf172,C9orf173,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AG.3891.01A	9	139413843	139972512	86	0.141	NEUTRAL	NA	30	"ABCA2,AGPAT2,C8G,C9orf139,C9orf142,C9orf172,CCDC183,CLIC3,EDF1,EGFL7,ENTPD2,FAM69B,FBXW5,FUT7,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,MAMDC4,NOTCH1,NPDC1,PHPT1,PTGDS,RABL6,SAPCD2,TMEM141,TRAF2,UAP1L1"
TCGA.AG.A01W.01A	9	139475751	140229505	120	0.2286	NEUTRAL	NA	50	"ABCA2,AGPAT2,ANAPC2,C8G,C9orf139,C9orf142,C9orf172,C9orf173,CCDC183,CLIC3,CYSRT1,DPP7,EDF1,EGFL7,ENTPD2,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,NDOR1,NELFB,NPDC1,NRARP,PHPT1,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1"
TCGA.AG.4009.01A	9	139571426	139698937	20	-0.3284	NEUTRAL	NA	8	"AGPAT2,CCDC183,FAM69B,LCN10,LCN15,LCN6,LCN8,TMEM141"
TCGA.AA.A01Q.01A	9	139641829	139700491	17	-0.051	NEUTRAL	NA	5	"CCDC183,LCN15,LCN6,LCN8,TMEM141"
TCGA.AA.A02K.01A	9	139734115	139751116	13	-0.5097	NEUTRAL	NA	4	"C9orf172,MAMDC4,PHPT1,RABL6"
TCGA.AA.A02K.01A	9	139752383	141124122	311	0.142	NEUTRAL	NA	49	"ABCA2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf173,CACNA1B,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EHMT1,ENTPD2,ENTPD8,EXD3,FAM157B,FAM166A,FBXW5,FUT7,GRIN1,LCN12,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOXA1,NPDC1,NRARP,NSMF,PNPLA7,PTGDS,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AA.A01Q.01A	9	139760573	139992231	52	-0.1017	NEUTRAL	NA	17	"ABCA2,C8G,C9orf139,C9orf142,CLIC3,EDF1,ENTPD2,FBXW5,FUT7,LCN12,LCNL1,MAN1B1,NPDC1,PTGDS,SAPCD2,TRAF2,UAP1L1"
TCGA.AG.4009.01A	9	139793141	139873237	18	-0.0798	NEUTRAL	NA	5	"C8G,FBXW5,LCN12,PTGDS,TRAF2"
TCGA.AG.3906.01A	9	139794874	139804312	3	0.3069	NEUTRAL	NA	1	TRAF2
TCGA.AG.3906.01A	9	139810934	139913122	19	-0.1783	NEUTRAL	NA	9	"ABCA2,C8G,C9orf142,CLIC3,FBXW5,LCN12,LCNL1,PTGDS,TRAF2"
TCGA.AD.6901	9	139830939	141071474	149	0.3066	NEUTRAL	NA	45	"ABCA2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf173,CACNA1B,CLIC3,CYSRT1,DPH7,DPP7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FBXW5,FUT7,GRIN1,LCN12,LCNL1,LRRC26,MAN1B1,MRPL41,NDOR1,NELFB,NOXA1,NPDC1,NRARP,NSMF,PNPLA7,PTGDS,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TUBB4B,UAP1L1,ZMYND19"
TCGA.AG.3605.01A	9	139848557	140174450	4	-0.1093	NEUTRAL	NA	31	"ABCA2,ANAPC2,C9orf139,C9orf142,C9orf173,CLIC3,CYSRT1,DPP7,ENTPD2,FAM166A,FUT7,GRIN1,LCN12,LCNL1,LRRC26,MAN1B1,NDOR1,NELFB,NPDC1,PTGDS,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TUBB4B,UAP1L1"
TCGA.AG.3892	9	139860630	140467064	31	-0.5119	NEUTRAL	NA	38	"ABCA2,ANAPC2,C9orf139,C9orf142,C9orf173,CLIC3,CYSRT1,DPH7,DPP7,ENTPD2,ENTPD8,EXD3,FAM166A,FUT7,GRIN1,LCNL1,LRRC26,MAN1B1,MRPL41,NDOR1,NELFB,NOXA1,NPDC1,NRARP,NSMF,PNPLA7,PTGDS,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TUBB4B,UAP1L1"
TCGA.AA.A01Q.01A	9	140008289	140040177	5	-0.4074	NEUTRAL	NA	2	"DPP7,GRIN1"
TCGA.AG.3891.01A	9	140036418	140166492	43	0.1457	NEUTRAL	NA	16	"ANAPC2,C9orf173,CYSRT1,FAM166A,GRIN1,LRRC26,NDOR1,NELFB,RNF208,RNF224,SLC34A3,SSNA1,TMEM203,TMEM210,TPRN,TUBB4B"
TCGA.AG.A015.01A	9	140040177	141015884	125	-0.1388	NEUTRAL	NA	29	"ANAPC2,ARRDC1,C9orf173,CACNA1B,CYSRT1,DPH7,EHMT1,ENTPD8,EXD3,FAM166A,GRIN1,LRRC26,MRPL41,NDOR1,NELFB,NOXA1,NRARP,NSMF,PNPLA7,RNF208,RNF224,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TUBB4B,ZMYND19"
TCGA.AA.A01Q.01A	9	140043412	140330413	72	-0.1055	NEUTRAL	NA	21	"ANAPC2,C9orf173,CYSRT1,ENTPD8,EXD3,FAM166A,GRIN1,LRRC26,NDOR1,NELFB,NOXA1,NRARP,RNF208,RNF224,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TUBB4B"
TCGA.AG.A01L.01A	9	140081932	141015884	126	0.0586	NEUTRAL	NA	26	"ANAPC2,ARRDC1,C9orf173,CACNA1B,CYSRT1,DPH7,EHMT1,ENTPD8,EXD3,FAM166A,MRPL41,NDOR1,NELFB,NOXA1,NRARP,NSMF,PNPLA7,RNF208,RNF224,SLC34A3,SSNA1,TMEM203,TOR4A,TPRN,TUBB4B,ZMYND19"
TCGA.AG.3891.01A	9	140173154	140346754	18	-0.5067	NEUTRAL	NA	6	"ENTPD8,EXD3,NOXA1,NRARP,NSMF,TOR4A"
TCGA.AA.A010.01A	9	140242476	140289686	15	-0.2183	NEUTRAL	NA	1	EXD3
TCGA.AG.3906.01A	9	140246481	140346754	13	-0.3774	NEUTRAL	NA	4	"ENTPD8,EXD3,NOXA1,NSMF"
TCGA.AG.4009.01A	9	140246481	140476948	47	-0.2256	NEUTRAL	NA	8	"DPH7,ENTPD8,EXD3,MRPL41,NOXA1,NSMF,PNPLA7,ZMYND19"
TCGA.AA.3980.01A	9	140329319	140346754	10	-0.367	NEUTRAL	NA	2	"ENTPD8,NSMF"
TCGA.AA.A01Q.01A	9	140330931	140438145	38	0.3231	NEUTRAL	NA	3	"ENTPD8,NSMF,PNPLA7"
TCGA.AA.3980.01A	9	140348131	141109683	126	0.266	NEUTRAL	NA	9	"ARRDC1,CACNA1B,DPH7,EHMT1,FAM157B,MRPL41,NSMF,PNPLA7,ZMYND19"
TCGA.AG.3891.01A	9	140349423	140469188	28	0.0014	NEUTRAL	NA	4	"DPH7,MRPL41,NSMF,PNPLA7"
TCGA.A6.A567	9	140382704	141011523	117	0.0003	NEUTRAL	NA	7	"ARRDC1,CACNA1B,DPH7,EHMT1,MRPL41,PNPLA7,ZMYND19"
TCGA.CM.6679	9	140382704	141071474	125	-0.20665	NEUTRAL	NA	7	"ARRDC1,CACNA1B,DPH7,EHMT1,MRPL41,PNPLA7,ZMYND19"
TCGA.AA.A01C.01A	9	140400413	140477397	20	-0.4939	NEUTRAL	NA	4	"DPH7,MRPL41,PNPLA7,ZMYND19"
TCGA.AA.A01Q.01A	9	140441235	140470477	10	-0.1512	NEUTRAL	NA	3	"DPH7,MRPL41,PNPLA7"
TCGA.AM.5820	9	140467064	140642330	30	-0.1434	NEUTRAL	NA	4	"ARRDC1,DPH7,EHMT1,ZMYND19"
TCGA.AA.A024.01A	9	140477397	141015884	78	0.037	NEUTRAL	NA	4	"ARRDC1,CACNA1B,EHMT1,ZMYND19"
TCGA.AG.3892	9	140477811	141071474	116	0.075	NEUTRAL	NA	4	"ARRDC1,CACNA1B,EHMT1,ZMYND19"
TCGA.AA.A01C.01A	9	140481368	141015884	70	0.1803	NEUTRAL	NA	4	"ARRDC1,CACNA1B,EHMT1,ZMYND19"
TCGA.AG.3891.01A	9	140510084	140968404	60	0.0326	NEUTRAL	NA	2	"CACNA1B,EHMT1"
TCGA.AA.A010.01A	9	140605360	140672287	12	0.346	NEUTRAL	NA	1	EHMT1
TCGA.AG.3906.01A	9	140611047	141015884	68	-0.2437	NEUTRAL	NA	2	"CACNA1B,EHMT1"
TCGA.AG.4009.01A	9	140622774	141015884	69	-0.0582	NEUTRAL	NA	2	"CACNA1B,EHMT1"
TCGA.A6.3808.01A	9	140638384	141109683	75	0.2687	NEUTRAL	NA	3	"CACNA1B,EHMT1,FAM157B"
TCGA.AM.5820	9	140644309	141071474	87	0.327	NEUTRAL	NA	2	"CACNA1B,EHMT1"
TCGA.AA.A010.01A	9	140674032	140732818	17	-0.3454	NEUTRAL	NA	1	EHMT1
TCGA.AA.3967.01A	9	140707820	141015884	54	-0.283	NEUTRAL	NA	2	"CACNA1B,EHMT1"
TCGA.AG.3909.01A	9	140728762	140850103	10	-0.0261	NEUTRAL	NA	2	"CACNA1B,EHMT1"
TCGA.AA.A010.01A	9	140807581	140881184	12	0.1713	NEUTRAL	NA	1	CACNA1B
TCGA.EI.6512	9	140823360	141013720	42	0.375	NEUTRAL	NA	1	CACNA1B
TCGA.AA.A00N.01A	9	140901170	140964136	17	-0.4766	NEUTRAL	NA	1	CACNA1B
TCGA.AG.3909.01A	9	140904405	141015884	31	-0.396	NEUTRAL	NA	1	CACNA1B
TCGA.CK.5914.01A	9	140907549	141109683	33	-0.2029	NEUTRAL	NA	2	"CACNA1B,FAM157B"
TCGA.AA.A010.01A	9	140948257	141109683	25	0.0082	NEUTRAL	NA	2	"CACNA1B,FAM157B"
TCGA.AG.3896	9	140952915	140960890	5	-0.139	NEUTRAL	NA	1	CACNA1B
TCGA.AA.3982	9	140962686	141071474	27	0.3614	NEUTRAL	NA	1	CACNA1B
TCGA.AG.3891.01A	9	140970219	141107424	14	-0.3031	NEUTRAL	NA	2	"CACNA1B,FAM157B"
TCGA.AG.4008	9	140971314	141071474	21	-0.0633	NEUTRAL	NA	1	CACNA1B
TCGA.DM.A1HA	9	141005655	141071474	13	0.1324	NEUTRAL	NA	1	CACNA1B
TCGA.A6.A567	9	141011580	141071474	7	-0.4493	NEUTRAL	NA	1	CACNA1B
TCGA.DM.A28F	9	141013720	141071474	6	-0.2849	NEUTRAL	NA	1	CACNA1B
TCGA.DY.A1DG	9	141013720	141071474	6	-0.3404	NEUTRAL	NA	1	CACNA1B
TCGA.EI.6512	9	141018422	141071474	5	-0.3908	NEUTRAL	NA	1	CACNA1B
TCGA.CK.4952.01A	10	83180	17989519	963	-0.0159	NEUTRAL	NA	83	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,MRC1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,TUBB8,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.F5.6811.01A	10	83180	37530148	1808	-0.0178	NEUTRAL	NA	150	Too-Many
TCGA.DC.6160.01A	10	83180	93562679	4275	0.0664	NEUTRAL	NA	417	Too-Many
TCGA.AG.A036.01A	10	83181	135290173	7347	-0.1676	NEUTRAL	NA	714	Too-Many
TCGA.CK.5914.01A	10	93180	298247	19	0.2988	NEUTRAL	NA	2	"TUBB8,ZMYND11"
TCGA.AG.A00C.01A	10	93180	329185	20	-0.3947	NEUTRAL	NA	3	"DIP2C,TUBB8,ZMYND11"
TCGA.AG.3906.01A	10	93180	871664	61	-0.4418	NEUTRAL	NA	4	"DIP2C,LARP4B,TUBB8,ZMYND11"
TCGA.AA.3509.01A	10	93180	1034345	79	-0.1164	NEUTRAL	NA	4	"DIP2C,LARP4B,TUBB8,ZMYND11"
TCGA.AG.4009.01A	10	93180	1034345	74	-0.1806	NEUTRAL	NA	4	"DIP2C,LARP4B,TUBB8,ZMYND11"
TCGA.AA.3967.01A	10	93180	1139313	104	-0.2401	NEUTRAL	NA	8	"DIP2C,GTPBP4,IDI1,IDI2,LARP4B,TUBB8,WDR37,ZMYND11"
TCGA.AG.3891.01A	10	93180	1175101	108	-0.1665	NEUTRAL	NA	8	"DIP2C,GTPBP4,IDI1,IDI2,LARP4B,TUBB8,WDR37,ZMYND11"
TCGA.AA.3930.01A	10	93180	1577740	127	-0.0512	NEUTRAL	NA	9	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,TUBB8,WDR37,ZMYND11"
TCGA.AA.A01K.01A	10	93180	3174511	125	-0.3987	NEUTRAL	NA	10	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,TUBB8,WDR37,ZMYND11"
TCGA.AG.A016.01A	10	93180	3190151	145	0.3654	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AG.A032.01A	10	93180	3197731	136	0.0354	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AA.A02E.01A	10	93180	3199594	145	-0.385	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.A6.3808.01A	10	93180	4887890	196	-0.07	NEUTRAL	NA	13	"ADARB2,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AA.3861.01A	10	93180	4887890	189	-0.3673	NEUTRAL	NA	13	"ADARB2,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AZ.4684.01A	10	93180	4889600	198	-0.3269	NEUTRAL	NA	13	"ADARB2,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AA.3862.01A	10	93180	5011789	197	-0.2424	NEUTRAL	NA	14	"ADARB2,AKR1C1,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AA.A010.01A	10	93180	5011789	203	0.3137	NEUTRAL	NA	14	"ADARB2,AKR1C1,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AG.A011.01A	10	93180	5139578	186	0.1517	NEUTRAL	NA	16	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AG.A02G.01A	10	93180	13380667	598	-0.1053	NEUTRAL	NA	55	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,NET1,NUDT5,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SEPHS1,SFMBT2,TAF3,TUBAL3,TUBB8,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AA.3939.01A	10	93180	14870093	697	0.1093	NEUTRAL	NA	60	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,NET1,NUDT5,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,SEC61A2,SEPHS1,SFMBT2,TAF3,TUBAL3,TUBB8,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AG.A00Y.01A	10	93180	15257948	712	0.1637	NEUTRAL	NA	70	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,RPP38,SEC61A2,SEPHS1,SFMBT2,SUV39H2,TAF3,TUBAL3,TUBB8,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.DM.A28M.01A	10	93180	15863591	818	-0.1949	NEUTRAL	NA	72	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,RPP38,SEC61A2,SEPHS1,SFMBT2,SUV39H2,TAF3,TUBAL3,TUBB8,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.A6.3810.01A	10	93180	18087551	982	0.1071	NEUTRAL	NA	83	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,MRC1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,TUBB8,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.AG.A008.01A	10	93180	22606766	1044	-0.2131	NEUTRAL	NA	98	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C10orf113,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CASC10,CCDC3,CDC123,CDNF,CELF2,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DHTKD1,DIP2C,DNAJC1,EBLN1,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MALRD1,MCM10,MEIG1,MLLT10,MRC1,NEBL,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PLXDC2,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SKIDA1,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,TUBB8,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.AA.A01I.01A	10	93180	27462020	1297	-0.1955	NEUTRAL	NA	120	Too-Many
TCGA.AG.A01L.01A	10	93180	30727876	1434	-0.1255	NEUTRAL	NA	134	Too-Many
TCGA.CK.4948.01B	10	93180	37490142	1810	-0.0363	NEUTRAL	NA	150	Too-Many
TCGA.AA.3980.01A	10	93180	43623513	1885	0.05	NEUTRAL	NA	158	Too-Many
TCGA.AA.A02F.01A	10	93180	49380942	1826	0.0111	NEUTRAL	NA	194	Too-Many
TCGA.AH.6549.01A	10	93180	51892549	2346	-0.0462	NEUTRAL	NA	217	Too-Many
TCGA.AA.A00O.01A	10	93180	71871254	2670	-0.0319	NEUTRAL	NA	280	Too-Many
TCGA.AG.A015.01A	10	93180	75490917	3093	-0.1485	NEUTRAL	NA	324	Too-Many
TCGA.AA.A017.01A	10	93180	75856932	3107	-0.0454	NEUTRAL	NA	333	Too-Many
TCGA.AA.A01C.01A	10	93180	79741134	3295	-0.0083	NEUTRAL	NA	346	Too-Many
TCGA.AY.A54L.01A	10	93180	82403729	3850	0.221	NEUTRAL	NA	364	Too-Many
TCGA.AG.A023.01A	10	93180	95276750	3992	-0.0888	NEUTRAL	NA	429	Too-Many
TCGA.CM.6165.01A	10	93180	98924515	4947	0.0162	NEUTRAL	NA	462	Too-Many
TCGA.AA.A02H.01A	10	93180	99227968	4393	0.028	NEUTRAL	NA	470	Too-Many
TCGA.AA.3815.01A	10	93180	102052673	5222	-0.0129	NEUTRAL	NA	502	Too-Many
TCGA.AA.A024.01A	10	93180	104590407	5318	0.0141	NEUTRAL	NA	547	Too-Many
TCGA.DM.A282.01A	10	93180	117221412	6475	-0.0068	NEUTRAL	NA	605	Too-Many
TCGA.AA.A004.01A	10	93180	135440021	6545	-0.1285	NEUTRAL	NA	717	Too-Many
TCGA.AA.A01D.01A	10	93180	135440021	6497	-0.3735	NEUTRAL	NA	717	Too-Many
TCGA.AA.A029.01A	10	93180	135440021	6657	-0.2399	NEUTRAL	NA	717	Too-Many
TCGA.AA.A02J.01A	10	93180	135440021	6472	-0.0983	NEUTRAL	NA	717	Too-Many
TCGA.AA.A02R.01A	10	93180	135440021	6566	-0.061	NEUTRAL	NA	717	Too-Many
TCGA.AA.A02W.01A	10	93180	135440021	6731	-0.3116	NEUTRAL	NA	717	Too-Many
TCGA.AG.A00H.01A	10	93180	135440021	6756	-0.1571	NEUTRAL	NA	717	Too-Many
TCGA.AG.A01J.01A	10	93180	135440021	6671	-0.0842	NEUTRAL	NA	717	Too-Many
TCGA.AG.A025.01A	10	93180	135440021	6868	-0.1077	NEUTRAL	NA	717	Too-Many
TCGA.AG.A02X.01A	10	93180	135440021	6834	-0.3254	NEUTRAL	NA	717	Too-Many
TCGA.CM.4744.01A	10	93180	135440021	7666	-0.057	NEUTRAL	NA	717	Too-Many
TCGA.CM.4750.01A	10	93180	135440021	7651	-0.1242	NEUTRAL	NA	717	Too-Many
TCGA.AG.3909.01A	10	94648	323298	16	0.0881	NEUTRAL	NA	3	"DIP2C,TUBB8,ZMYND11"
TCGA.AA.A00L.01A	10	94648	1034345	69	0.103	NEUTRAL	NA	4	"DIP2C,LARP4B,TUBB8,ZMYND11"
TCGA.AA.A01Q.01A	10	94648	6157141	275	-0.025	NEUTRAL	NA	30	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,KLF6,LARP4B,NET1,PFKP,PITRM1,RBM17,TUBAL3,TUBB8,UCN3,WDR37,ZMYND11"
TCGA.AA.A00Q.01A	10	94648	47087642	1681	-0.0549	NEUTRAL	NA	183	Too-Many
TCGA.AA.A01F.01A	10	95053	13271573	505	0.1301	NEUTRAL	NA	53	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,NET1,NUDT5,OPTN,PFKFB3,PFKP,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,TUBB8,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AG.3611.01A	10	95053	34605986	1450	0.0445	NEUTRAL	NA	144	Too-Many
TCGA.AG.3902	10	135655	135707	2	-0.3214	NEUTRAL	NA	0	None
TCGA.AA.3845	10	135655	158945	9	0.0466	NEUTRAL	NA	0	None
TCGA.D5.6932	10	135655	158945	9	-0.3609	NEUTRAL	NA	0	None
TCGA.AA.3844	10	135655	163706	12	-0.032	NEUTRAL	NA	0	None
TCGA.AA.3519	10	135655	252692	18	-0.2967	NEUTRAL	NA	1	ZMYND11
TCGA.AA.3850	10	135655	274674	21	-0.11535	NEUTRAL	NA	1	ZMYND11
TCGA.DM.A1D6	10	135655	467317	80	-0.0767	NEUTRAL	NA	2	"DIP2C,ZMYND11"
TCGA.A6.6653	10	135655	514031	93	-0.0891	NEUTRAL	NA	2	"DIP2C,ZMYND11"
TCGA.D5.6929	10	135655	559314	119	-0.4767	NEUTRAL	NA	2	"DIP2C,ZMYND11"
TCGA.D5.6537	10	135655	756886	172	-0.0972	NEUTRAL	NA	2	"DIP2C,ZMYND11"
TCGA.A6.A567	10	135655	1124530	264	-0.3053	NEUTRAL	NA	7	"DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AG.4008	10	135655	1129813	266	0.0215	NEUTRAL	NA	7	"DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AA.3516	10	135655	1463157	421	0.0607	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.CM.5862	10	135655	1751841	609	0.2477	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.5M.AATA	10	135655	1935386	721	-0.456	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.G4.6299	10	135655	2357120	971	0.2836	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.A6.5665	10	135655	2460240	1026	-0.4844	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.DM.A1D9	10	135655	2554312	1085	-0.0166	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.QL.A97D	10	135655	2887593	1294	0.1132	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AA.3989	10	135655	3005322	1371	-0.2346	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AA.3531	10	135655	3009062	1374	-0.0028	NEUTRAL	NA	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AG.4015	10	135655	3684015	1735	0.3001	NEUTRAL	NA	10	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.D5.5539	10	135655	3962231	1911	0.1956	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.CM.4752	10	135655	4124668	1998	-0.0301	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.AA.3666	10	135655	4380622	2137	0.0552	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.AG.A020	10	135655	4651814	2270	0.0803	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.AA.A01T	10	135655	4835812	2369	0.1369	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.G4.6317	10	135655	5621627	2731	0.3701	NEUTRAL	NA	21	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,CALML3,CALML5,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,NET1,PFKP,PITRM1,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.A6.3807	10	135655	6653935	3235	0.1114	NEUTRAL	NA	31	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.F5.6813	10	135655	6888587	3386	0.0044	NEUTRAL	NA	31	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AA.3977	10	135655	6940377	3424	0.0929	NEUTRAL	NA	31	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.CM.6163	10	135655	7019605	3492	0.1174	NEUTRAL	NA	31	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AA.3517	10	135655	7036948	3515	0.0179	NEUTRAL	NA	31	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AG.3883	10	135655	7122365	3573	-0.0444	NEUTRAL	NA	31	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AA.3811	10	135655	8551681	4239	0.2411	NEUTRAL	NA	38	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AA.3982	10	135655	8575887	4265	0.1527	NEUTRAL	NA	38	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AA.3530	10	135655	9085339	4532	0.0791	NEUTRAL	NA	38	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AA.3973	10	135655	9085625	4538	0.06	NEUTRAL	NA	38	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.D5.6922	10	135655	9197665	4574	-0.3768	NEUTRAL	NA	38	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.AA.3875	10	135655	12364205	5899	-0.0082	NEUTRAL	NA	47	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,NUDT5,PFKFB3,PFKP,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.DY.A1DG	10	135655	12611386	6028	-0.0114	NEUTRAL	NA	48	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,NUDT5,PFKFB3,PFKP,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AA.3556	10	135655	13058555	6295	1.00E-04	NEUTRAL	NA	49	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,NUDT5,PFKFB3,PFKP,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AA.3524	10	135655	13155725	6350	-0.0252	NEUTRAL	NA	50	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,NUDT5,OPTN,PFKFB3,PFKP,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.NH.A8F7	10	135655	13208062	6344	0.3606	NEUTRAL	NA	51	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,NET1,NUDT5,OPTN,PFKFB3,PFKP,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AA.3833	10	135655	14441715	7094	-0.016	NEUTRAL	NA	57	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,NET1,NUDT5,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,SEC61A2,SEPHS1,SFMBT2,TAF3,TUBAL3,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AA.3681	10	135655	15934920	7732	0.0199	NEUTRAL	NA	71	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,RPP38,SEC61A2,SEPHS1,SFMBT2,SUV39H2,TAF3,TUBAL3,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AG.3583	10	135655	16358582	7629	-0.0047	NEUTRAL	NA	71	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,RPP38,SEC61A2,SEPHS1,SFMBT2,SUV39H2,TAF3,TUBAL3,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.G4.6314	10	135655	17772232	8525	-0.3326	NEUTRAL	NA	80	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,ST8SIA6,STAM,SUV39H2,TAF3,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.EI.6508	10	135655	18632924	8735	-0.0216	NEUTRAL	NA	84	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,MRC1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.D5.6532	10	135655	18864957	8854	-0.0174	NEUTRAL	NA	85	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,MRC1,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.AG.A01Y	10	135655	19749806	9201	-0.0073	NEUTRAL	NA	87	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MALRD1,MCM10,MEIG1,MRC1,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.F4.6460	10	135655	20639506	9623	-0.0077	NEUTRAL	NA	88	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MALRD1,MCM10,MEIG1,MRC1,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PLXDC2,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.EI.6513	10	135655	20707412	9668	-0.0223	NEUTRAL	NA	88	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MALRD1,MCM10,MEIG1,MRC1,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PLXDC2,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.CA.5254	10	135655	24882760	10986	0.2103	NEUTRAL	NA	107	Too-Many
TCGA.D5.5538	10	135655	26053547	11400	-0.0106	NEUTRAL	NA	111	Too-Many
TCGA.AH.6897	10	135655	26732847	11665	-0.0084	NEUTRAL	NA	114	Too-Many
TCGA.AA.3860	10	135655	27410485	11906	0.0148	NEUTRAL	NA	118	Too-Many
TCGA.BM.6198	10	135655	29637998	12828	0.05305	NEUTRAL	NA	129	Too-Many
TCGA.AA.A01Z	10	135655	29876771	12924	-0.0012	NEUTRAL	NA	130	Too-Many
TCGA.A6.2685	10	135655	30147027	13041	-0.0128	NEUTRAL	NA	130	Too-Many
TCGA.G4.6303	10	135655	30610914	13288	-0.4199	NEUTRAL	NA	132	Too-Many
TCGA.D5.6536	10	135655	30862066	13413	-0.0029	NEUTRAL	NA	133	Too-Many
TCGA.EI.6510	10	135655	32287696	13840	-0.0085	NEUTRAL	NA	137	Too-Many
TCGA.G4.6295	10	135655	32420090	13914	0.0012	NEUTRAL	NA	138	Too-Many
TCGA.AZ.4616	10	135655	32917852	14018	-0.3187	NEUTRAL	NA	140	Too-Many
TCGA.DC.6683	10	135655	34480922	14653	-0.3386	NEUTRAL	NA	143	Too-Many
TCGA.AG.3890	10	135655	36036779	15019	-0.05	NEUTRAL	NA	148	Too-Many
TCGA.D5.6534	10	135655	38956878	15781	0.1693	NEUTRAL	NA	154	Too-Many
TCGA.A6.4107	10	135655	38968283	15819	0.2082	NEUTRAL	NA	154	Too-Many
TCGA.5M.AATE	10	135655	39030135	15826	0.3529	NEUTRAL	NA	154	Too-Many
TCGA.AF.2692	10	135655	39050889	15831	-0.2099	NEUTRAL	NA	154	Too-Many
TCGA.CI.6622	10	135655	39050889	15805	-0.0079	NEUTRAL	NA	154	Too-Many
TCGA.EI.7004	10	135655	39050889	15787	-0.3716	NEUTRAL	NA	154	Too-Many
TCGA.DM.A1HA	10	135655	42523460	15829	0.0086	NEUTRAL	NA	154	Too-Many
TCGA.DY.A1DF	10	135655	42682132	15828	0.3303	NEUTRAL	NA	154	Too-Many
TCGA.AA.3968	10	135655	43371349	15946	0.0213	NEUTRAL	NA	156	Too-Many
TCGA.AF.2689	10	135655	43849579	16097	0.2036	NEUTRAL	NA	159	Too-Many
TCGA.AG.3887	10	135655	44795942	16380	-0.0714	NEUTRAL	NA	165	Too-Many
TCGA.AA.3662	10	135655	45314938	16729	-0.0182	NEUTRAL	NA	166	Too-Many
TCGA.A6.6782	10	135655	46148325	16908	0.2339	NEUTRAL	NA	175	Too-Many
TCGA.CI.6621	10	135655	46169847	16949	-0.0712	NEUTRAL	NA	175	Too-Many
TCGA.AD.6899	10	135655	46210750	16934	-0.0112	NEUTRAL	NA	175	Too-Many
TCGA.CM.5349	10	135655	46210750	16972	-0.0315	NEUTRAL	NA	175	Too-Many
TCGA.D5.6923	10	135655	46210750	16933	-0.0128	NEUTRAL	NA	175	Too-Many
TCGA.G4.6625	10	135655	46210750	16969	0.1958	NEUTRAL	NA	175	Too-Many
TCGA.AH.6644	10	135655	46215430	16936	-0.0239	NEUTRAL	NA	175	Too-Many
TCGA.A6.2671	10	135655	46215765	16968	0.0398	NEUTRAL	NA	175	Too-Many
TCGA.AA.3695	10	135655	46215765	16989	-0.4077	NEUTRAL	NA	175	Too-Many
TCGA.AA.3986	10	135655	46215765	16962	0.0068	NEUTRAL	NA	175	Too-Many
TCGA.AA.A02Y	10	135655	46691158	16963	-0.0027	NEUTRAL	NA	178	Too-Many
TCGA.D5.6924	10	135655	46691158	16940	0.0681	NEUTRAL	NA	178	Too-Many
TCGA.G4.6315	10	135655	46691158	16984	-0.1953	NEUTRAL	NA	178	Too-Many
TCGA.A6.6781	10	135655	46943376	15586	-0.0096	NEUTRAL	NA	178	Too-Many
TCGA.AZ.6606	10	135655	46943376	16924	-0.003	NEUTRAL	NA	178	Too-Many
TCGA.EI.6881	10	135655	46943376	16938	-0.1427	NEUTRAL	NA	178	Too-Many
TCGA.F5.6464	10	135655	46943376	16989	-0.0358	NEUTRAL	NA	178	Too-Many
TCGA.RU.A8FL	10	135655	46943376	16975	-0.0924	NEUTRAL	NA	178	Too-Many
TCGA.AF.6136	10	135655	46977565	16970	-0.1041	NEUTRAL	NA	179	Too-Many
TCGA.F4.6459	10	135655	46977565	16986	0.2363	NEUTRAL	NA	179	Too-Many
TCGA.CA.6715	10	135655	46995473	16903	-0.0122	NEUTRAL	NA	180	Too-Many
TCGA.DY.A0XA	10	135655	46995473	16955	-0.0494	NEUTRAL	NA	180	Too-Many
TCGA.AH.6544	10	135655	47006368	16964	-0.2216	NEUTRAL	NA	180	Too-Many
TCGA.AG.3731	10	135655	47077738	16993	-0.0133	NEUTRAL	NA	180	Too-Many
TCGA.AA.3678	10	135655	47085302	16994	0.003	NEUTRAL	NA	181	Too-Many
TCGA.AA.3812	10	135655	47085302	16996	-0.0073	NEUTRAL	NA	181	Too-Many
TCGA.AG.3881	10	135655	47085302	16994	0.0505	NEUTRAL	NA	181	Too-Many
TCGA.CA.6716	10	135655	47096229	16950	-0.2777	NEUTRAL	NA	182	Too-Many
TCGA.CM.5348	10	135655	47096229	16982	-0.0415	NEUTRAL	NA	182	Too-Many
TCGA.A6.3809	10	135655	47099528	15622	-0.0156	NEUTRAL	NA	182	Too-Many
TCGA.CA.6719	10	135655	47099528	16935	-0.1886	NEUTRAL	NA	182	Too-Many
TCGA.D5.6926	10	135655	47099528	16950	-0.2125	NEUTRAL	NA	182	Too-Many
TCGA.F4.6806	10	135655	47099528	16911	-0.0174	NEUTRAL	NA	182	Too-Many
TCGA.AZ.4323	10	135655	47099687	16927	-0.0657	NEUTRAL	NA	182	Too-Many
TCGA.CM.6676	10	135655	47099868	16931	-0.071	NEUTRAL	NA	182	Too-Many
TCGA.WS.AB45	10	135655	47593132	17005	-0.0071	NEUTRAL	NA	186	Too-Many
TCGA.AG.3728	10	135655	47692944	17066	0.1526	NEUTRAL	NA	187	Too-Many
TCGA.A6.A56B	10	135655	50750974	17776	-0.0216	NEUTRAL	NA	205	Too-Many
TCGA.A6.6650	10	135655	52625772	16752	0.1973	NEUTRAL	NA	220	Too-Many
TCGA.AA.3867	10	135655	52643077	18209	-0.0998	NEUTRAL	NA	220	Too-Many
TCGA.EF.5830	10	135655	52643077	18193	-0.0204	NEUTRAL	NA	220	Too-Many
TCGA.AA.3549	10	135655	52797886	18298	-0.0124	NEUTRAL	NA	221	Too-Many
TCGA.AA.3693	10	135655	52844292	18312	0.0139	NEUTRAL	NA	221	Too-Many
TCGA.G4.6310	10	135655	52877029	18323	-0.0394	NEUTRAL	NA	221	Too-Many
TCGA.AG.A026	10	135655	52881845	18304	-0.044	NEUTRAL	NA	221	Too-Many
TCGA.DM.A28H	10	135655	52937111	18326	-0.0047	NEUTRAL	NA	221	Too-Many
TCGA.D5.6931	10	135655	52996213	18316	-0.0093	NEUTRAL	NA	221	Too-Many
TCGA.EI.6512	10	135655	53043718	18395	-0.0106	NEUTRAL	NA	221	Too-Many
TCGA.DM.A28F	10	135655	53074038	18364	-0.0572	NEUTRAL	NA	221	Too-Many
TCGA.A6.5666	10	135655	53106081	18395	-0.1716	NEUTRAL	NA	221	Too-Many
TCGA.CM.6170	10	135655	53202704	18455	-0.2103	NEUTRAL	NA	221	Too-Many
TCGA.F4.6461	10	135655	53237720	18440	-0.014	NEUTRAL	NA	221	Too-Many
TCGA.AD.6890	10	135655	53249843	18469	-0.0197	NEUTRAL	NA	221	Too-Many
TCGA.5M.AAT4	10	135655	53303396	18510	0.1289	NEUTRAL	NA	221	Too-Many
TCGA.DM.A1DB	10	135655	53365207	18548	-0.0123	NEUTRAL	NA	221	Too-Many
TCGA.G4.6626	10	135655	53623114	18629	-0.4237	NEUTRAL	NA	222	Too-Many
TCGA.A6.2679	10	135655	55295646	19350	-0.0222	NEUTRAL	NA	224	Too-Many
TCGA.AA.3846	10	135655	55664004	19485	0.0026	NEUTRAL	NA	225	Too-Many
TCGA.G5.6572	10	135655	55845300	19530	-0.009	NEUTRAL	NA	225	Too-Many
TCGA.DM.A1D0	10	135655	55895815	19488	0.0073	NEUTRAL	NA	225	Too-Many
TCGA.AG.3592	10	135655	57034039	19991	-0.0308	NEUTRAL	NA	225	Too-Many
TCGA.A6.2681	10	135655	57073530	19987	-0.457	NEUTRAL	NA	225	Too-Many
TCGA.5M.AAT5	10	135655	57754563	20181	-0.1592	NEUTRAL	NA	226	Too-Many
TCGA.AY.5543	10	135655	57877117	20054	-0.0105	NEUTRAL	NA	226	Too-Many
TCGA.AA.3544	10	135655	57894726	20236	0.0006	NEUTRAL	NA	226	Too-Many
TCGA.G4.6297	10	135655	58148067	20313	-0.1385	NEUTRAL	NA	227	Too-Many
TCGA.NH.A6GC	10	135655	58326494	20325	-0.5001	NEUTRAL	NA	227	Too-Many
TCGA.CL.4957	10	135655	58727744	20490	-0.028	NEUTRAL	NA	227	Too-Many
TCGA.F4.6808	10	135655	61026329	21243	0.017	NEUTRAL	NA	234	Too-Many
TCGA.AY.A69D	10	135655	61722956	21555	0.0065	NEUTRAL	NA	237	Too-Many
TCGA.DM.A0XD	10	135655	65143557	22664	-0.0222	NEUTRAL	NA	249	Too-Many
TCGA.AG.3598	10	135655	66794697	23187	0.0154	NEUTRAL	NA	250	Too-Many
TCGA.EI.7002	10	135655	66940034	23242	-0.0091	NEUTRAL	NA	250	Too-Many
TCGA.AF.2691	10	135655	70086955	24361	0.0126	NEUTRAL	NA	258	Too-Many
TCGA.F5.6812	10	135655	72356196	25146	0.0967	NEUTRAL	NA	288	Too-Many
TCGA.AA.A01R	10	135655	72816785	25399	-0.0052	NEUTRAL	NA	293	Too-Many
TCGA.AD.6889	10	135655	73065138	25475	-0.0086	NEUTRAL	NA	294	Too-Many
TCGA.AA.3864	10	135655	73392448	25573	0.0184	NEUTRAL	NA	296	Too-Many
TCGA.AY.6196	10	135655	74451484	25637	-0.0884	NEUTRAL	NA	306	Too-Many
TCGA.DM.A285	10	135655	74541863	25867	-0.0653	NEUTRAL	NA	307	Too-Many
TCGA.CI.6619	10	135655	75894403	26076	0.0699	NEUTRAL	NA	333	Too-Many
TCGA.T9.A92H	10	135655	77274479	26356	0.0112	NEUTRAL	NA	342	Too-Many
TCGA.AA.3518	10	135655	77409384	26333	-0.008	NEUTRAL	NA	342	Too-Many
TCGA.AF.A56K	10	135655	79263444	27151	-0.0444	NEUTRAL	NA	343	Too-Many
TCGA.CM.6675	10	135655	82232705	28183	-0.002	NEUTRAL	NA	362	Too-Many
TCGA.D5.6539	10	135655	82877973	28492	-0.0151	NEUTRAL	NA	363	Too-Many
TCGA.EI.6509	10	135655	82877973	28555	-0.0748	NEUTRAL	NA	363	Too-Many
TCGA.AG.3901	10	135655	83158035	28549	0.0242	NEUTRAL	NA	363	Too-Many
TCGA.AA.3712	10	135655	83391816	28706	0.2581	NEUTRAL	NA	363	Too-Many
TCGA.AA.3526	10	135655	83533206	28734	-0.0122	NEUTRAL	NA	363	Too-Many
TCGA.AA.3851	10	135655	85114124	29328	0.2933	NEUTRAL	NA	364	Too-Many
TCGA.G4.6323	10	135655	86149034	29819	-0.0333	NEUTRAL	NA	371	Too-Many
TCGA.AG.4021	10	135655	86528979	29944	-0.006	NEUTRAL	NA	371	Too-Many
TCGA.A6.2682	10	135655	87441343	29812	0.0019	NEUTRAL	NA	372	Too-Many
TCGA.NH.A50T	10	135655	87781001	30265	-0.0074	NEUTRAL	NA	372	Too-Many
TCGA.AA.3680	10	135655	87930558	30530	-0.0073	NEUTRAL	NA	372	Too-Many
TCGA.QG.A5YW	10	135655	87951577	30342	-0.0199	NEUTRAL	NA	372	Too-Many
TCGA.AZ.4681	10	135655	88946888	30754	-0.0147	NEUTRAL	NA	383	Too-Many
TCGA.A6.6649	10	135655	89418729	30844	0.1194	NEUTRAL	NA	385	Too-Many
TCGA.A6.2678	10	135655	89485294	30862	-0.0375	NEUTRAL	NA	386	Too-Many
TCGA.AA.3696	10	135655	95217063	32709	-0.0037	NEUTRAL	NA	427	Too-Many
TCGA.AA.3819	10	135655	95231179	32713	0.003	NEUTRAL	NA	427	Too-Many
TCGA.AY.4071	10	135655	97024813	33029	-0.0004	NEUTRAL	NA	444	Too-Many
TCGA.AA.3972	10	135655	100781973	34449	-0.297	NEUTRAL	NA	486	Too-Many
TCGA.AG.3602	10	135655	101382251	34501	0.0213	NEUTRAL	NA	490	Too-Many
TCGA.AA.3488	10	135655	103675409	35155	-0.0009	NEUTRAL	NA	526	Too-Many
TCGA.CM.4747	10	135655	104036354	35178	-0.0138	NEUTRAL	NA	533	Too-Many
TCGA.AA.3831	10	135655	104127170	35180	-0.001	NEUTRAL	NA	533	Too-Many
TCGA.AG.3727	10	135655	104127170	35244	0.0121	NEUTRAL	NA	533	Too-Many
TCGA.DM.A28A	10	135655	104451415	35226	0.0085	NEUTRAL	NA	543	Too-Many
TCGA.G4.6588	10	135655	105419286	35461	-0.0135	NEUTRAL	NA	561	Too-Many
TCGA.AY.A8YK	10	135655	108153351	36499	0.027	NEUTRAL	NA	571	Too-Many
TCGA.AD.6965	10	135655	109529757	36987	0	NEUTRAL	NA	572	Too-Many
TCGA.AA.3956	10	135655	110669663	37470	0.0092	NEUTRAL	NA	572	Too-Many
TCGA.AA.3842	10	135655	110702425	37490	0.0378	NEUTRAL	NA	572	Too-Many
TCGA.A6.6138	10	135655	111268886	37706	-0.1969	NEUTRAL	NA	572	Too-Many
TCGA.D5.7000	10	135655	112377829	37812	-0.0031	NEUTRAL	NA	578	Too-Many
TCGA.F4.6704	10	135655	112535954	38017	0.0531	NEUTRAL	NA	579	Too-Many
TCGA.AA.3522	10	135655	113616254	38539	0	NEUTRAL	NA	583	Too-Many
TCGA.AA.A02O	10	135655	113905521	38644	-0.0038	NEUTRAL	NA	583	Too-Many
TCGA.CK.6748	10	135655	114061524	38627	-0.0033	NEUTRAL	NA	585	Too-Many
TCGA.EI.6514	10	135655	114211209	38722	-0.1468	NEUTRAL	NA	588	Too-Many
TCGA.3L.AA1B	10	135655	114217477	38750	-0.065	NEUTRAL	NA	588	Too-Many
TCGA.AA.3818	10	135655	114244743	38801	-0.0026	NEUTRAL	NA	588	Too-Many
TCGA.AA.3837	10	135655	115213247	39125	0.014	NEUTRAL	NA	589	Too-Many
TCGA.AA.3852	10	135655	115213247	39123	-0.0063	NEUTRAL	NA	589	Too-Many
TCGA.DM.A0XF	10	135655	115430249	39213	-0.0162	NEUTRAL	NA	591	Too-Many
TCGA.AA.3877	10	135655	124093384	42638	0.0003	NEUTRAL	NA	642	Too-Many
TCGA.AF.3913	10	135655	124812486	42730	-0.0519	NEUTRAL	NA	654	Too-Many
TCGA.AA.3975	10	135655	128837926	44469	-0.0024	NEUTRAL	NA	678	Too-Many
TCGA.4N.A93T	10	135655	129189152	44684	-0.0406	NEUTRAL	NA	679	Too-Many
TCGA.CK.6747	10	135655	130815998	45283	-0.0115	NEUTRAL	NA	684	Too-Many
TCGA.CM.6171	10	135655	133862021	46924	-0.019	NEUTRAL	NA	690	Too-Many
TCGA.DM.A288	10	135655	134315902	46944	-0.0219	NEUTRAL	NA	696	Too-Many
TCGA.A6.6140	10	135655	135361096	47264	-0.0687	NEUTRAL	NA	714	Too-Many
TCGA.4T.AA8H	10	135655	135434550	47266	0.3508	NEUTRAL	NA	715	Too-Many
TCGA.5M.AAT6	10	135655	135434550	47257	-0.0053	NEUTRAL	NA	715	Too-Many
TCGA.A6.2674	10	135655	135434550	47274	-0.0759	NEUTRAL	NA	715	Too-Many
TCGA.A6.2675	10	135655	135434550	46955	0	NEUTRAL	NA	715	Too-Many
TCGA.A6.2677	10	135655	135434550	43644	-0.1408	NEUTRAL	NA	715	Too-Many
TCGA.A6.2680	10	135655	135434550	47210	-0.1345	NEUTRAL	NA	715	Too-Many
TCGA.A6.2683	10	135655	135434550	47241	0.0242	NEUTRAL	NA	715	Too-Many
TCGA.A6.2684	10	135655	135434550	43630	-0.0099	NEUTRAL	NA	715	Too-Many
TCGA.A6.4105	10	135655	135434550	47285	0	NEUTRAL	NA	715	Too-Many
TCGA.A6.5656	10	135655	135434550	47084	-0.0061	NEUTRAL	NA	715	Too-Many
TCGA.A6.5657	10	135655	135434550	47156	-0.0189	NEUTRAL	NA	715	Too-Many
TCGA.A6.5659	10	135655	135434550	43577	-0.1488	NEUTRAL	NA	715	Too-Many
TCGA.A6.5660	10	135655	135434550	47124	-0.0112	NEUTRAL	NA	715	Too-Many
TCGA.A6.5662	10	135655	135434550	47143	0.024	NEUTRAL	NA	715	Too-Many
TCGA.A6.5664	10	135655	135434550	47140	-0.0167	NEUTRAL	NA	715	Too-Many
TCGA.A6.5667	10	135655	135434550	47261	-0.4401	NEUTRAL	NA	715	Too-Many
TCGA.A6.6137	10	135655	135434550	47293	-0.0339	NEUTRAL	NA	715	Too-Many
TCGA.A6.6141	10	135655	135434550	47261	-0.013	NEUTRAL	NA	715	Too-Many
TCGA.A6.6142	10	135655	135434550	47284	-0.0204	NEUTRAL	NA	715	Too-Many
TCGA.A6.6648	10	135655	135434550	47285	-0.3033	NEUTRAL	NA	715	Too-Many
TCGA.A6.6651	10	135655	135434550	47072	0.1191	NEUTRAL	NA	715	Too-Many
TCGA.A6.6652	10	135655	135434550	47272	-0.0127	NEUTRAL	NA	715	Too-Many
TCGA.A6.6654	10	135655	135434550	47165	-0.0907	NEUTRAL	NA	715	Too-Many
TCGA.A6.6780	10	135655	135434550	47164	0.0026	NEUTRAL	NA	715	Too-Many
TCGA.A6.A565	10	135655	135434550	46958	-0.02	NEUTRAL	NA	715	Too-Many
TCGA.A6.A566	10	135655	135434550	46880	-0.0082	NEUTRAL	NA	715	Too-Many
TCGA.AA.3489	10	135655	135434550	47128	0.0082	NEUTRAL	NA	715	Too-Many
TCGA.AA.3492	10	135655	135434550	47241	-0.0079	NEUTRAL	NA	715	Too-Many
TCGA.AA.3494	10	135655	135434550	47252	-0.4657	NEUTRAL	NA	715	Too-Many
TCGA.AA.3495	10	135655	135434550	47251	-0.0026	NEUTRAL	NA	715	Too-Many
TCGA.AA.3496	10	135655	135434550	47118	0.0065	NEUTRAL	NA	715	Too-Many
TCGA.AA.3502	10	135655	135434550	47240	-0.0144	NEUTRAL	NA	715	Too-Many
TCGA.AA.3510	10	135655	135434550	47245	0	NEUTRAL	NA	715	Too-Many
TCGA.AA.3511	10	135655	135434550	47170	-0.2021	NEUTRAL	NA	715	Too-Many
TCGA.AA.3514	10	135655	135434550	47261	0.0071	NEUTRAL	NA	715	Too-Many
TCGA.AA.3527	10	135655	135434550	47256	-0.0042	NEUTRAL	NA	715	Too-Many
TCGA.AA.3529	10	135655	135434550	47266	-0.0166	NEUTRAL	NA	715	Too-Many
TCGA.AA.3532	10	135655	135434550	47265	-0.0827	NEUTRAL	NA	715	Too-Many
TCGA.AA.3534	10	135655	135434550	47270	-0.0089	NEUTRAL	NA	715	Too-Many
TCGA.AA.3543	10	135655	135434550	47229	0	NEUTRAL	NA	715	Too-Many
TCGA.AA.3555	10	135655	135434550	47288	0	NEUTRAL	NA	715	Too-Many
TCGA.AA.3558	10	135655	135434550	47282	-0.0017	NEUTRAL	NA	715	Too-Many
TCGA.AA.3560	10	135655	135434550	47283	-0.0214	NEUTRAL	NA	715	Too-Many
TCGA.AA.3561	10	135655	135434550	47287	0.0008	NEUTRAL	NA	715	Too-Many
TCGA.AA.3655	10	135655	135434550	47266	-0.0214	NEUTRAL	NA	715	Too-Many
TCGA.AA.3660	10	135655	135434550	47271	-0.0071	NEUTRAL	NA	715	Too-Many
TCGA.AA.3663	10	135655	135434550	47181	0.0059	NEUTRAL	NA	715	Too-Many
TCGA.AA.3673	10	135655	135434550	47302	-0.1401	NEUTRAL	NA	715	Too-Many
TCGA.AA.3675	10	135655	135434550	47290	-0.0003	NEUTRAL	NA	715	Too-Many
TCGA.AA.3679	10	135655	135434550	47293	-0.0159	NEUTRAL	NA	715	Too-Many
TCGA.AA.3684	10	135655	135434550	47293	-0.0037	NEUTRAL	NA	715	Too-Many
TCGA.AA.3685	10	135655	135434550	47300	-0.1991	NEUTRAL	NA	715	Too-Many
TCGA.AA.3688	10	135655	135434550	47304	0	NEUTRAL	NA	715	Too-Many
TCGA.AA.3697	10	135655	135434550	47242	-0.2938	NEUTRAL	NA	715	Too-Many
TCGA.AA.3710	10	135655	135434550	47252	-0.0058	NEUTRAL	NA	715	Too-Many
TCGA.AA.3713	10	135655	135434550	47255	-0.0056	NEUTRAL	NA	715	Too-Many
TCGA.AA.3715	10	135655	135434550	47302	0	NEUTRAL	NA	715	Too-Many
TCGA.AA.3814	10	135655	135434550	47295	-0.0141	NEUTRAL	NA	715	Too-Many
TCGA.AA.3821	10	135655	135434550	47194	-0.0253	NEUTRAL	NA	715	Too-Many
TCGA.AA.3841	10	135655	135434550	47308	-0.1095	NEUTRAL	NA	715	Too-Many
TCGA.AA.3848	10	135655	135434550	47303	-0.1215	NEUTRAL	NA	715	Too-Many
TCGA.AA.3854	10	135655	135434550	47304	-0.0017	NEUTRAL	NA	715	Too-Many
TCGA.AA.3855	10	135655	135434550	47192	-0.0074	NEUTRAL	NA	715	Too-Many
TCGA.AA.3856	10	135655	135434550	47303	-0.0572	NEUTRAL	NA	715	Too-Many
TCGA.AA.3858	10	135655	135434550	47292	-0.0834	NEUTRAL	NA	715	Too-Many
TCGA.AA.3866	10	135655	135434550	47251	-0.1919	NEUTRAL	NA	715	Too-Many
TCGA.AA.3869	10	135655	135434550	47233	0.1355	NEUTRAL	NA	715	Too-Many
TCGA.AA.3870	10	135655	135434550	47248	0.0288	NEUTRAL	NA	715	Too-Many
TCGA.AA.3947	10	135655	135434550	47207	-0.004	NEUTRAL	NA	715	Too-Many
TCGA.AA.3949	10	135655	135434550	47237	0.0165	NEUTRAL	NA	715	Too-Many
TCGA.AA.3950	10	135655	135434550	47245	0.0129	NEUTRAL	NA	715	Too-Many
TCGA.AA.3955	10	135655	135434550	47250	0.0101	NEUTRAL	NA	715	Too-Many
TCGA.AA.3966	10	135655	135434550	47227	0	NEUTRAL	NA	715	Too-Many
TCGA.AA.3971	10	135655	135434550	47253	-0.0128	NEUTRAL	NA	715	Too-Many
TCGA.AA.3976	10	135655	135434550	47238	-0.0362	NEUTRAL	NA	715	Too-Many
TCGA.AA.3984	10	135655	135434550	47211	-0.0201	NEUTRAL	NA	715	Too-Many
TCGA.AA.3994	10	135655	135434550	47216	-0.0044	NEUTRAL	NA	715	Too-Many
TCGA.AA.A01P	10	135655	135434550	47218	-0.0013	NEUTRAL	NA	715	Too-Many
TCGA.AA.A01S	10	135655	135434550	47243	-0.00215	NEUTRAL	NA	715	Too-Many
TCGA.AA.A01V	10	135655	135434550	47248	0.0111	NEUTRAL	NA	715	Too-Many
TCGA.AA.A01X	10	135655	135434550	47192	-0.3715	NEUTRAL	NA	715	Too-Many
TCGA.AA.A022	10	135655	135434550	47182	-0.007	NEUTRAL	NA	715	Too-Many
TCGA.AA.A03F	10	135655	135434550	47254	-0.0037	NEUTRAL	NA	715	Too-Many
TCGA.AA.A03J	10	135655	135434550	46279	0	NEUTRAL	NA	715	Too-Many
TCGA.AD.5900	10	135655	135434550	47195	-0.0142	NEUTRAL	NA	715	Too-Many
TCGA.AD.6548	10	135655	135434550	47109	-0.0146	NEUTRAL	NA	715	Too-Many
TCGA.AD.6888	10	135655	135434550	47228	-0.0182	NEUTRAL	NA	715	Too-Many
TCGA.AD.6895	10	135655	135434550	47228	-0.0166	NEUTRAL	NA	715	Too-Many
TCGA.AD.6901	10	135655	135434550	47138	-0.3012	NEUTRAL	NA	715	Too-Many
TCGA.AD.6963	10	135655	135434550	47226	0	NEUTRAL	NA	715	Too-Many
TCGA.AD.6964	10	135655	135434550	47223	-0.0118	NEUTRAL	NA	715	Too-Many
TCGA.AD.A5EJ	10	135655	135434550	47023	-0.0126	NEUTRAL	NA	715	Too-Many
TCGA.AD.A5EK	10	135655	135434550	47000	-0.0567	NEUTRAL	NA	715	Too-Many
TCGA.AF.2687	10	135655	135434550	47161	-0.2109	NEUTRAL	NA	715	Too-Many
TCGA.AF.2690	10	135655	135434550	47292	-0.0581	NEUTRAL	NA	715	Too-Many
TCGA.AF.2693	10	135655	135434550	47286	-0.0104	NEUTRAL	NA	715	Too-Many
TCGA.AF.3911	10	135655	135434550	47284	0.0019	NEUTRAL	NA	715	Too-Many
TCGA.AF.4110	10	135655	135434550	47275	0.0197	NEUTRAL	NA	715	Too-Many
TCGA.AF.5654	10	135655	135434550	47166	-0.0124	NEUTRAL	NA	715	Too-Many
TCGA.AF.6655	10	135655	135434550	47181	-0.0304	NEUTRAL	NA	715	Too-Many
TCGA.AF.6672	10	135655	135434550	47206	-0.3999	NEUTRAL	NA	715	Too-Many
TCGA.AF.A56L	10	135655	135434550	47185	-0.181	NEUTRAL	NA	715	Too-Many
TCGA.AF.A56N	10	135655	135434550	47198	-0.0088	NEUTRAL	NA	715	Too-Many
TCGA.AG.3574	10	135655	135434550	47289	0.0007	NEUTRAL	NA	715	Too-Many
TCGA.AG.3575	10	135655	135434550	47280	-0.0023	NEUTRAL	NA	715	Too-Many
TCGA.AG.3580	10	135655	135434550	47290	0.0006	NEUTRAL	NA	715	Too-Many
TCGA.AG.3581	10	135655	135434550	47266	-0.0098	NEUTRAL	NA	715	Too-Many
TCGA.AG.3584	10	135655	135434550	47280	-0.0138	NEUTRAL	NA	715	Too-Many
TCGA.AG.3591	10	135655	135434550	47301	-0.1958	NEUTRAL	NA	715	Too-Many
TCGA.AG.3594	10	135655	135434550	47281	0.0029	NEUTRAL	NA	715	Too-Many
TCGA.AG.3599	10	135655	135434550	47239	0	NEUTRAL	NA	715	Too-Many
TCGA.AG.3612	10	135655	135434550	46982	-0.0445	NEUTRAL	NA	715	Too-Many
TCGA.AG.3725	10	135655	135434550	47212	-0.0231	NEUTRAL	NA	715	Too-Many
TCGA.AG.3732	10	135655	135434550	47136	-0.0027	NEUTRAL	NA	715	Too-Many
TCGA.AG.3742	10	135655	135434550	46964	-0.0122	NEUTRAL	NA	715	Too-Many
TCGA.AG.3878	10	135655	135434550	47304	0.0195	NEUTRAL	NA	715	Too-Many
TCGA.AG.3882	10	135655	135434550	47303	0	NEUTRAL	NA	715	Too-Many
TCGA.AG.3885	10	135655	135434550	47302	-0.0263	NEUTRAL	NA	715	Too-Many
TCGA.AG.3892	10	135655	135434550	47149	-0.0084	NEUTRAL	NA	715	Too-Many
TCGA.AG.3893	10	135655	135434550	46847	-0.0016	NEUTRAL	NA	715	Too-Many
TCGA.AG.3894	10	135655	135434550	47151	-0.0102	NEUTRAL	NA	715	Too-Many
TCGA.AG.3896	10	135655	135434550	47156	-0.0109	NEUTRAL	NA	715	Too-Many
TCGA.AG.3898	10	135655	135434550	47105	-0.0283	NEUTRAL	NA	715	Too-Many
TCGA.AG.4022	10	135655	135434550	47286	-0.0308	NEUTRAL	NA	715	Too-Many
TCGA.AG.A02N	10	135655	135434550	47223	-0.0014	NEUTRAL	NA	715	Too-Many
TCGA.AH.6547	10	135655	135434550	47225	-0.0104	NEUTRAL	NA	715	Too-Many
TCGA.AH.6643	10	135655	135434550	47210	-0.0112	NEUTRAL	NA	715	Too-Many
TCGA.AH.6903	10	135655	135434550	47177	-0.0019	NEUTRAL	NA	715	Too-Many
TCGA.AM.5821	10	135655	135434550	47123	0.0087	NEUTRAL	NA	715	Too-Many
TCGA.AU.3779	10	135655	135434550	47261	-0.2051	NEUTRAL	NA	715	Too-Many
TCGA.AY.6197	10	135655	135434550	46263	-0.011	NEUTRAL	NA	715	Too-Many
TCGA.AY.6386	10	135655	135434550	47240	-0.012	NEUTRAL	NA	715	Too-Many
TCGA.AY.A71X	10	135655	135434550	47239	-0.0328	NEUTRAL	NA	715	Too-Many
TCGA.AZ.4308	10	135655	135434550	47252	-0.0101	NEUTRAL	NA	715	Too-Many
TCGA.AZ.4315	10	135655	135434550	47232	-0.0032	NEUTRAL	NA	715	Too-Many
TCGA.AZ.4615	10	135655	135434550	47240	-0.0029	NEUTRAL	NA	715	Too-Many
TCGA.AZ.4682	10	135655	135434550	47251	-0.0036	NEUTRAL	NA	715	Too-Many
TCGA.AZ.5403	10	135655	135434550	47202	-0.2538	NEUTRAL	NA	715	Too-Many
TCGA.AZ.5407	10	135655	135434550	47273	-0.0072	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6598	10	135655	135434550	47290	-0.0169	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6599	10	135655	135434550	47292	-0.0207	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6600	10	135655	135434550	47256	-0.0068	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6601	10	135655	135434550	47279	-0.0062	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6603	10	135655	135434550	47174	-0.2109	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6605	10	135655	135434550	47114	-0.0019	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6607	10	135655	135434550	47147	-0.1704	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6608	10	135655	135434550	47125	-0.0475	NEUTRAL	NA	715	Too-Many
TCGA.CA.5255	10	135655	135434550	47112	-0.0112	NEUTRAL	NA	715	Too-Many
TCGA.CA.5256	10	135655	135434550	46905	0.012	NEUTRAL	NA	715	Too-Many
TCGA.CA.5796	10	135655	135434550	47178	0.0038	NEUTRAL	NA	715	Too-Many
TCGA.CA.5797	10	135655	135434550	47230	-0.0558	NEUTRAL	NA	715	Too-Many
TCGA.CA.6717	10	135655	135434550	47088	-0.0076	NEUTRAL	NA	715	Too-Many
TCGA.CA.6718	10	135655	135434550	47118	-0.0157	NEUTRAL	NA	715	Too-Many
TCGA.CI.6620	10	135655	135434550	47185	-0.0543	NEUTRAL	NA	715	Too-Many
TCGA.CI.6623	10	135655	135434550	47218	-0.1439	NEUTRAL	NA	715	Too-Many
TCGA.CI.6624	10	135655	135434550	47202	-0.174	NEUTRAL	NA	715	Too-Many
TCGA.CK.4947	10	135655	135434550	47206	-0.0224	NEUTRAL	NA	715	Too-Many
TCGA.CK.4950	10	135655	135434550	46850	-0.0248	NEUTRAL	NA	715	Too-Many
TCGA.CK.4951	10	135655	135434550	47053	0.002	NEUTRAL	NA	715	Too-Many
TCGA.CK.5912	10	135655	135434550	47158	0.0258	NEUTRAL	NA	715	Too-Many
TCGA.CK.5913	10	135655	135434550	47219	-0.0094	NEUTRAL	NA	715	Too-Many
TCGA.CK.5915	10	135655	135434550	47183	0.1115	NEUTRAL	NA	715	Too-Many
TCGA.CK.5916	10	135655	135434550	47161	-0.0122	NEUTRAL	NA	715	Too-Many
TCGA.CK.6746	10	135655	135434550	47154	-0.0065	NEUTRAL	NA	715	Too-Many
TCGA.CL.5917	10	135655	135434550	47169	-0.0318	NEUTRAL	NA	715	Too-Many
TCGA.CL.5918	10	135655	135434550	47168	-0.0163	NEUTRAL	NA	715	Too-Many
TCGA.CM.4743	10	135655	135434550	47264	-0.0068	NEUTRAL	NA	715	Too-Many
TCGA.CM.4746	10	135655	135434550	47245	-0.0071	NEUTRAL	NA	715	Too-Many
TCGA.CM.4748	10	135655	135434550	47251	-0.0056	NEUTRAL	NA	715	Too-Many
TCGA.CM.5341	10	135655	135434550	47248	-0.2266	NEUTRAL	NA	715	Too-Many
TCGA.CM.5344	10	135655	135434550	47254	-0.2241	NEUTRAL	NA	715	Too-Many
TCGA.CM.5860	10	135655	135434550	47195	0.2448	NEUTRAL	NA	715	Too-Many
TCGA.CM.5861	10	135655	135434550	47221	-0.0072	NEUTRAL	NA	715	Too-Many
TCGA.CM.5863	10	135655	135434550	47185	-0.0646	NEUTRAL	NA	715	Too-Many
TCGA.CM.5864	10	135655	135434550	47174	-0.1009	NEUTRAL	NA	715	Too-Many
TCGA.CM.5868	10	135655	135434550	47200	-0.0148	NEUTRAL	NA	715	Too-Many
TCGA.CM.6161	10	135655	135434550	47179	-0.0696	NEUTRAL	NA	715	Too-Many
TCGA.CM.6162	10	135655	135434550	47130	-0.0197	NEUTRAL	NA	715	Too-Many
TCGA.CM.6164	10	135655	135434550	47209	-0.1909	NEUTRAL	NA	715	Too-Many
TCGA.CM.6166	10	135655	135434550	47275	-0.0268	NEUTRAL	NA	715	Too-Many
TCGA.CM.6167	10	135655	135434550	47254	-0.0186	NEUTRAL	NA	715	Too-Many
TCGA.CM.6168	10	135655	135434550	47259	-0.0106	NEUTRAL	NA	715	Too-Many
TCGA.CM.6169	10	135655	135434550	46997	-0.1064	NEUTRAL	NA	715	Too-Many
TCGA.CM.6172	10	135655	135434550	47284	-0.0148	NEUTRAL	NA	715	Too-Many
TCGA.CM.6674	10	135655	135434550	47161	-0.0125	NEUTRAL	NA	715	Too-Many
TCGA.CM.6677	10	135655	135434550	47092	-0.2748	NEUTRAL	NA	715	Too-Many
TCGA.CM.6678	10	135655	135434550	47158	0.1795	NEUTRAL	NA	715	Too-Many
TCGA.CM.6679	10	135655	135434550	47111	-0.12185	NEUTRAL	NA	715	Too-Many
TCGA.CM.6680	10	135655	135434550	47190	-0.0541	NEUTRAL	NA	715	Too-Many
TCGA.D5.5537	10	135655	135434550	47164	-0.0046	NEUTRAL	NA	715	Too-Many
TCGA.D5.5540	10	135655	135434550	47268	-0.0102	NEUTRAL	NA	715	Too-Many
TCGA.D5.5541	10	135655	135434550	47270	-0.0424	NEUTRAL	NA	715	Too-Many
TCGA.D5.6529	10	135655	135434550	47286	0.007	NEUTRAL	NA	715	Too-Many
TCGA.D5.6530	10	135655	135434550	47276	-0.0098	NEUTRAL	NA	715	Too-Many
TCGA.D5.6531	10	135655	135434550	47261	-0.2419	NEUTRAL	NA	715	Too-Many
TCGA.D5.6533	10	135655	135434550	47109	0.0702	NEUTRAL	NA	715	Too-Many
TCGA.D5.6538	10	135655	135434550	47249	-0.0372	NEUTRAL	NA	715	Too-Many
TCGA.D5.6540	10	135655	135434550	47160	-0.0007	NEUTRAL	NA	715	Too-Many
TCGA.D5.6541	10	135655	135434550	47280	-0.0136	NEUTRAL	NA	715	Too-Many
TCGA.D5.6898	10	135655	135434550	47186	-0.1299	NEUTRAL	NA	715	Too-Many
TCGA.D5.6920	10	135655	135434550	47175	-0.0075	NEUTRAL	NA	715	Too-Many
TCGA.D5.6927	10	135655	135434550	47192	-0.0043	NEUTRAL	NA	715	Too-Many
TCGA.D5.6928	10	135655	135434550	47175	-0.0184	NEUTRAL	NA	715	Too-Many
TCGA.D5.6930	10	135655	135434550	47170	-0.0079	NEUTRAL	NA	715	Too-Many
TCGA.DC.4745	10	135655	135434550	47285	0.1863	NEUTRAL	NA	715	Too-Many
TCGA.DC.5337	10	135655	135434550	47096	-0.0115	NEUTRAL	NA	715	Too-Many
TCGA.DC.5869	10	135655	135434550	47165	0	NEUTRAL	NA	715	Too-Many
TCGA.DC.6154	10	135655	135434550	47180	-0.011	NEUTRAL	NA	715	Too-Many
TCGA.DC.6155	10	135655	135434550	47054	-0.4101	NEUTRAL	NA	715	Too-Many
TCGA.DC.6157	10	135655	135434550	46787	-0.4142	NEUTRAL	NA	715	Too-Many
TCGA.DC.6158	10	135655	135434550	47131	0.0063	NEUTRAL	NA	715	Too-Many
TCGA.DC.6681	10	135655	135434550	47202	-0.0137	NEUTRAL	NA	715	Too-Many
TCGA.DC.6682	10	135655	135434550	47228	-0.1633	NEUTRAL	NA	715	Too-Many
TCGA.DM.A0X9	10	135655	135434550	47255	-0.0181	NEUTRAL	NA	715	Too-Many
TCGA.DM.A1D4	10	135655	135434550	47272	-0.0039	NEUTRAL	NA	715	Too-Many
TCGA.DM.A1D7	10	135655	135434550	47273	-0.0083	NEUTRAL	NA	715	Too-Many
TCGA.DM.A1D8	10	135655	135434550	47210	0.1671	NEUTRAL	NA	715	Too-Many
TCGA.DM.A1HB	10	135655	135434550	46295	0.0019	NEUTRAL	NA	715	Too-Many
TCGA.DM.A280	10	135655	135434550	47193	0	NEUTRAL	NA	715	Too-Many
TCGA.DM.A28C	10	135655	135434550	47222	-0.0082	NEUTRAL	NA	715	Too-Many
TCGA.DM.A28E	10	135655	135434550	47180	0.0028	NEUTRAL	NA	715	Too-Many
TCGA.DM.A28G	10	135655	135434550	47224	0.0074	NEUTRAL	NA	715	Too-Many
TCGA.DM.A28K	10	135655	135434550	47172	-0.0021	NEUTRAL	NA	715	Too-Many
TCGA.DT.5265	10	135655	135434550	47221	0.0148	NEUTRAL	NA	715	Too-Many
TCGA.DY.A1DC	10	135655	135434550	47169	-0.0204	NEUTRAL	NA	715	Too-Many
TCGA.DY.A1H8	10	135655	135434550	47269	-0.0078	NEUTRAL	NA	715	Too-Many
TCGA.EI.6506	10	135655	135434550	47206	-0.0113	NEUTRAL	NA	715	Too-Many
TCGA.EI.6507	10	135655	135434550	47282	-0.0075	NEUTRAL	NA	715	Too-Many
TCGA.EI.6511	10	135655	135434550	47267	-0.0129	NEUTRAL	NA	715	Too-Many
TCGA.EI.6882	10	135655	135434550	47190	-0.0015	NEUTRAL	NA	715	Too-Many
TCGA.EI.6883	10	135655	135434550	47172	-0.036	NEUTRAL	NA	715	Too-Many
TCGA.EI.6884	10	135655	135434550	47145	-0.0039	NEUTRAL	NA	715	Too-Many
TCGA.EI.6885	10	135655	135434550	47178	-0.0477	NEUTRAL	NA	715	Too-Many
TCGA.EI.6917	10	135655	135434550	47153	-0.0206	NEUTRAL	NA	715	Too-Many
TCGA.F4.6463	10	135655	135434550	47262	-0.0236	NEUTRAL	NA	715	Too-Many
TCGA.F4.6569	10	135655	135434550	47295	-0.0151	NEUTRAL	NA	715	Too-Many
TCGA.F4.6570	10	135655	135434550	47288	-0.0193	NEUTRAL	NA	715	Too-Many
TCGA.F4.6703	10	135655	135434550	47194	0.0214	NEUTRAL	NA	715	Too-Many
TCGA.F4.6805	10	135655	135434550	47187	0.0004	NEUTRAL	NA	715	Too-Many
TCGA.F4.6807	10	135655	135434550	47124	-0.0821	NEUTRAL	NA	715	Too-Many
TCGA.F4.6809	10	135655	135434550	47182	-0.0362	NEUTRAL	NA	715	Too-Many
TCGA.F4.6854	10	135655	135434550	47171	0.0006	NEUTRAL	NA	715	Too-Many
TCGA.F4.6855	10	135655	135434550	47162	-5.00E-04	NEUTRAL	NA	715	Too-Many
TCGA.F4.6856	10	135655	135434550	47186	0.001	NEUTRAL	NA	715	Too-Many
TCGA.F5.6465	10	135655	135434550	47293	-0.0268	NEUTRAL	NA	715	Too-Many
TCGA.F5.6571	10	135655	135434550	47204	-0.0003	NEUTRAL	NA	715	Too-Many
TCGA.F5.6702	10	135655	135434550	47064	-0.1381	NEUTRAL	NA	715	Too-Many
TCGA.F5.6810	10	135655	135434550	47216	-0.0761	NEUTRAL	NA	715	Too-Many
TCGA.F5.6814	10	135655	135434550	47182	-0.0081	NEUTRAL	NA	715	Too-Many
TCGA.F5.6861	10	135655	135434550	47167	-0.0014	NEUTRAL	NA	715	Too-Many
TCGA.F5.6863	10	135655	135434550	47187	-0.0262	NEUTRAL	NA	715	Too-Many
TCGA.F5.6864	10	135655	135434550	47192	-0.1479	NEUTRAL	NA	715	Too-Many
TCGA.G4.6293	10	135655	135434550	47251	-0.0205	NEUTRAL	NA	715	Too-Many
TCGA.G4.6294	10	135655	135434550	47291	-0.0157	NEUTRAL	NA	715	Too-Many
TCGA.G4.6298	10	135655	135434550	47271	0.0004	NEUTRAL	NA	715	Too-Many
TCGA.G4.6302	10	135655	135434550	47264	-0.0091	NEUTRAL	NA	715	Too-Many
TCGA.G4.6304	10	135655	135434550	47188	-0.0099	NEUTRAL	NA	715	Too-Many
TCGA.G4.6306	10	135655	135434550	47271	-0.024	NEUTRAL	NA	715	Too-Many
TCGA.G4.6307	10	135655	135434550	47278	-0.4197	NEUTRAL	NA	715	Too-Many
TCGA.G4.6309	10	135655	135434550	47185	-0.0016	NEUTRAL	NA	715	Too-Many
TCGA.G4.6311	10	135655	135434550	47275	-0.0333	NEUTRAL	NA	715	Too-Many
TCGA.G4.6320	10	135655	135434550	47288	-0.005	NEUTRAL	NA	715	Too-Many
TCGA.G4.6321	10	135655	135434550	47279	-0.0046	NEUTRAL	NA	715	Too-Many
TCGA.G4.6586	10	135655	135434550	47288	-0.0173	NEUTRAL	NA	715	Too-Many
TCGA.G4.6628	10	135655	135434550	47155	-0.0026	NEUTRAL	NA	715	Too-Many
TCGA.G5.6233	10	135655	135434550	47291	0.0466	NEUTRAL	NA	715	Too-Many
TCGA.G5.6235	10	135655	135434550	47301	-0.0311	NEUTRAL	NA	715	Too-Many
TCGA.G5.6641	10	135655	135434550	47171	-0.1324	NEUTRAL	NA	715	Too-Many
TCGA.NH.A50U	10	135655	135434550	47256	-0.0129	NEUTRAL	NA	715	Too-Many
TCGA.NH.A50V	10	135655	135434550	46977	-0.0218	NEUTRAL	NA	715	Too-Many
TCGA.NH.A5IV	10	135655	135434550	47136	0.0055	NEUTRAL	NA	715	Too-Many
TCGA.NH.A6GA	10	135655	135434550	47226	0.0097	NEUTRAL	NA	715	Too-Many
TCGA.NH.A6GB	10	135655	135434550	47259	-0.0621	NEUTRAL	NA	715	Too-Many
TCGA.NH.A8F8	10	135655	135434550	47280	-0.0081	NEUTRAL	NA	715	Too-Many
TCGA.QG.A5YV	10	135655	135434550	46923	-0.0051	NEUTRAL	NA	715	Too-Many
TCGA.QG.A5YX	10	135655	135434550	46915	-0.0614	NEUTRAL	NA	715	Too-Many
TCGA.QG.A5Z1	10	135655	135434550	46882	-0.0158	NEUTRAL	NA	715	Too-Many
TCGA.QG.A5Z2	10	135655	135434550	46950	-0.0208	NEUTRAL	NA	715	Too-Many
TCGA.SS.A7HO	10	135655	135434550	47270	-0.3309	NEUTRAL	NA	715	Too-Many
TCGA.AU.6004	10	135707	135434550	46963	-0.0263	NEUTRAL	NA	715	Too-Many
TCGA.CK.6751	10	135707	135434550	46985	-0.0071	NEUTRAL	NA	715	Too-Many
TCGA.AG.3902	10	135852	135434550	47155	0.0696	NEUTRAL	NA	715	Too-Many
TCGA.D5.6932	10	159075	52734494	18213	0.0114	NEUTRAL	NA	220	Too-Many
TCGA.AG.A01W.01A	10	215908	451678	43	0.2278	NEUTRAL	NA	2	"DIP2C,ZMYND11"
TCGA.AA.3941	10	219331	274674	9	-0.2956	NEUTRAL	NA	1	ZMYND11
TCGA.AA.A00D.01A	10	255782	1034345	65	0.0804	NEUTRAL	NA	3	"DIP2C,LARP4B,ZMYND11"
TCGA.AA.A00F.01A	10	255782	22605298	935	-0.2237	NEUTRAL	NA	95	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C10orf113,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CASC10,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,DNAJC1,EBLN1,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HACD1,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MALRD1,MCM10,MEIG1,MLLT10,MRC1,NEBL,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PLXDC2,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SKIDA1,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37,ZMYND11"
TCGA.AA.A00K.01A	10	255782	69793705	2173	-0.0539	NEUTRAL	NA	255	Too-Many
TCGA.AA.A00A.01A	10	255782	135373539	6130	0.0651	NEUTRAL	NA	715	Too-Many
TCGA.AA.3519	10	273343	32391710	13883	-0.0561	NEUTRAL	NA	138	Too-Many
TCGA.AA.3844	10	274674	4390789	2124	0.0364	NEUTRAL	NA	11	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.AA.A00J.01A	10	285927	15646157	642	-0.1261	NEUTRAL	NA	70	"ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,RPP38,SEC61A2,SEPHS1,SFMBT2,SUV39H2,TAF3,TUBAL3,UCMA,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AG.A00C.01A	10	332159	428537	17	0.351	NEUTRAL	NA	1	DIP2C
TCGA.AG.A00C.01A	10	429939	3197731	114	-0.0232	NEUTRAL	NA	9	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,PITRM1,WDR37"
TCGA.AA.A00N.01A	10	430466	890860	31	-0.3942	NEUTRAL	NA	2	"DIP2C,LARP4B"
TCGA.DM.A1D6	10	469348	135434550	47181	-0.0059	NEUTRAL	NA	714	Too-Many
TCGA.AG.A01W.01A	10	508343	14910100	611	-0.0373	NEUTRAL	NA	59	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,NET1,NUDT5,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,SEC61A2,SEPHS1,SFMBT2,TAF3,TUBAL3,UCMA,UCN3,UPF2,USP6NL,WDR37"
TCGA.A6.6653	10	551085	23592467	10399	-0.0659	NEUTRAL	NA	102	Too-Many
TCGA.D5.6929	10	566290	52828170	18143	-0.0357	NEUTRAL	NA	220	Too-Many
TCGA.DC.4749	10	699088	135434550	47134	-0.0284	NEUTRAL	NA	714	Too-Many
TCGA.D5.6537	10	766866	46215765	16700	-0.0239	NEUTRAL	NA	173	Too-Many
TCGA.AG.3906.01A	10	875325	3141408	57	-0.1033	NEUTRAL	NA	7	"ADARB2,GTPBP4,IDI1,IDI2,LARP4B,PFKP,WDR37"
TCGA.AG.4009.01A	10	1038417	1066699	16	0.2504	NEUTRAL	NA	2	"GTPBP4,IDI2"
TCGA.AA.A00N.01A	10	1038417	1070471	18	-0.5002	NEUTRAL	NA	2	"GTPBP4,IDI2"
TCGA.AA.3509.01A	10	1065406	4889600	105	-0.2044	NEUTRAL	NA	8	"ADARB2,AKR1E2,IDI1,IDI2,KLF6,PFKP,PITRM1,WDR37"
TCGA.AA.A00L.01A	10	1065406	35857933	1451	0.0408	NEUTRAL	NA	142	Too-Many
TCGA.AG.4009.01A	10	1068588	5922210	181	-0.1193	NEUTRAL	NA	21	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,FAM208B,GDI2,IDI1,IDI2,KLF6,NET1,PFKP,PITRM1,TUBAL3,UCN3,WDR37"
TCGA.AA.A00N.01A	10	1094767	3197731	69	-0.2471	NEUTRAL	NA	5	"ADARB2,IDI1,PFKP,PITRM1,WDR37"
TCGA.AA.A00D.01A	10	1126283	12940364	379	0.0524	NEUTRAL	NA	43	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,NET1,NUDT5,PFKFB3,PFKP,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL,WDR37"
TCGA.AG.4008	10	1296967	135434550	46605	-0.0047	NEUTRAL	NA	708	Too-Many
TCGA.AA.3516	10	1514218	135434550	46775	0.0046	NEUTRAL	NA	708	Too-Many
TCGA.AA.3850	10	1554409	1561210	7	-0.51365	NEUTRAL	NA	1	ADARB2
TCGA.AA.3850	10	1562363	3646049	1259	0.22335	NEUTRAL	NA	3	"ADARB2,PFKP,PITRM1"
TCGA.AA.3930.01A	10	1598769	3160921	18	-0.5108	NEUTRAL	NA	2	"ADARB2,PFKP"
TCGA.DY.A1DD	10	1687504	135434550	46710	-0.0181	NEUTRAL	NA	708	Too-Many
TCGA.A6.2672	10	1756419	129007880	43831	-0.0408	NEUTRAL	NA	672	Too-Many
TCGA.CM.5862	10	1760518	1854772	46	0.2163	NEUTRAL	NA	1	ADARB2
TCGA.5M.AATA	10	1935528	7148301	2867	0.3205	NEUTRAL	NA	23	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,IL15RA,IL2RA,KLF6,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,TUBAL3,UCN3"
TCGA.G4.6299	10	2360002	46207800	16003	0.2854	NEUTRAL	NA	167	Too-Many
TCGA.A6.5661	10	2415438	79290836	26110	-0.0782	NEUTRAL	NA	335	Too-Many
TCGA.A6.5665	10	2461204	4926007	1398	0.0814	NEUTRAL	NA	4	"AKR1E2,KLF6,PFKP,PITRM1"
TCGA.DM.A1D9	10	2576173	42433539	14725	0.0054	NEUTRAL	NA	146	Too-Many
TCGA.QL.A97D	10	2901164	8581225	2983	0.1579	NEUTRAL	NA	30	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3"
TCGA.AA.3664	10	2959730	47099868	15679	-0.0047	NEUTRAL	NA	174	Too-Many
TCGA.D5.6535	10	2993333	9583877	3393	-0.3998	NEUTRAL	NA	30	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3"
TCGA.AA.3989	10	3009062	16344053	6476	0.0617	NEUTRAL	NA	63	"ACBD7,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,HSPA14,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,RPP38,SEC61A2,SEPHS1,SFMBT2,SUV39H2,TAF3,TUBAL3,UCMA,UCN3,UPF2,USP6NL"
TCGA.AA.A00Z.01A	10	3141408	135053133	132	0.0059	NEUTRAL	NA	695	Too-Many
TCGA.AG.3605.01A	10	3141408	135053133	141	0.0035	NEUTRAL	NA	695	Too-Many
TCGA.AG.3906.01A	10	3143066	3193336	32	-0.3537	NEUTRAL	NA	2	"PFKP,PITRM1"
TCGA.AG.3891.01A	10	3158905	5788148	122	-0.2154	NEUTRAL	NA	15	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ASB13,CALML3,CALML5,FAM208B,KLF6,NET1,PFKP,PITRM1,TUBAL3,UCN3"
TCGA.AA.3930.01A	10	3162037	4887890	46	0.031	NEUTRAL	NA	4	"AKR1E2,KLF6,PFKP,PITRM1"
TCGA.AA.3967.01A	10	3171964	70248175	2428	-0.2048	NEUTRAL	NA	254	Too-Many
TCGA.AA.A01K.01A	10	3178594	7611580	225	0.0553	NEUTRAL	NA	25	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,IL15RA,IL2RA,ITIH5,KLF6,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TUBAL3,UCN3"
TCGA.AG.A016.01A	10	3191766	3202419	9	-0.1881	NEUTRAL	NA	1	PITRM1
TCGA.AG.3906.01A	10	3197731	5842514	118	-0.0814	NEUTRAL	NA	15	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ASB13,CALML3,CALML5,FAM208B,GDI2,KLF6,NET1,PITRM1,TUBAL3,UCN3"
TCGA.AA.A02E.01A	10	3200184	5788148	95	0.2274	NEUTRAL	NA	14	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ASB13,CALML3,CALML5,FAM208B,KLF6,NET1,PITRM1,TUBAL3,UCN3"
TCGA.AG.A032.01A	10	3201058	12208636	358	-0.0682	NEUTRAL	NA	36	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CELF2,DHTKD1,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,NET1,PFKFB3,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL"
TCGA.AG.A016.01A	10	3205879	5005580	19	0.224	NEUTRAL	NA	4	"AKR1C1,AKR1E2,KLF6,PITRM1"
TCGA.AA.A00N.01A	10	3214850	4868459	6	-0.2801	NEUTRAL	NA	3	"AKR1E2,KLF6,PITRM1"
TCGA.AA.3941	10	3482092	3506217	8	-0.3344	NEUTRAL	NA	0	None
TCGA.AA.3850	10	3668897	4276735	336	0.29335	NEUTRAL	NA	1	KLF6
TCGA.AA.3941	10	3668897	4352412	382	0.3666	NEUTRAL	NA	1	KLF6
TCGA.AG.4015	10	3743083	42786972	14018	0.3312	NEUTRAL	NA	144	Too-Many
TCGA.AM.5820	10	3772580	5393935	859	0.0141	NEUTRAL	NA	6	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,KLF6"
TCGA.AG.A00C.01A	10	3823663	6104002	143	-0.0875	NEUTRAL	NA	18	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,IL15RA,IL2RA,KLF6,NET1,TUBAL3,UCN3"
TCGA.D5.5539	10	3967508	89298182	28833	0.2458	NEUTRAL	NA	374	Too-Many
TCGA.CM.4752	10	4129468	135434550	45227	-0.0226	NEUTRAL	NA	704	Too-Many
TCGA.AA.3850	10	4285514	4804254	275	-0.10415	NEUTRAL	NA	0	None
TCGA.AA.3941	10	4353443	5261174	460	0.0148	NEUTRAL	NA	5	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2"
TCGA.AA.3844	10	4392878	4845593	231	-0.2938	NEUTRAL	NA	0	None
TCGA.AG.A020	10	4653477	21970076	7809	0.1122	NEUTRAL	NA	82	"ACBD7,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C10orf113,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CASC10,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,HACD1,HSPA14,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,MALRD1,MCM10,MEIG1,MLLT10,MRC1,NEBL,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PHYH,PLXDC2,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SKIDA1,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM"
TCGA.AA.3850	10	4814267	5130782	156	0.07295	NEUTRAL	NA	4	"AKR1C1,AKR1C2,AKR1C3,AKR1E2"
TCGA.AA.3844	10	4846625	6362219	720	0.1082	NEUTRAL	NA	19	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,IL15RA,IL2RA,NET1,PFKFB3,RBM17,TUBAL3,UCN3"
TCGA.AA.A01T	10	4849576	8251306	1691	0.0564	NEUTRAL	NA	27	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,NET1,PFKFB3,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3"
TCGA.A6.5665	10	4944815	12580411	3548	-0.128	NEUTRAL	NA	36	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CDC123,CELF2,DHTKD1,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,NET1,NUDT5,PFKFB3,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL"
TCGA.A6.A567	10	4961020	5206970	104	-0.0453	NEUTRAL	NA	3	"AKR1C1,AKR1C2,AKR1C3"
TCGA.AG.3909.01A	10	5005580	5437257	46	0.2168	NEUTRAL	NA	6	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,TUBAL3,UCN3"
TCGA.AZ.4684.01A	10	5005580	5468565	52	0.3005	NEUTRAL	NA	7	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,NET1,TUBAL3,UCN3"
TCGA.AG.A016.01A	10	5005941	5043659	16	-0.162	NEUTRAL	NA	2	"AKR1C1,AKR1C2"
TCGA.AG.A01N.01A	10	5005941	5442766	46	0.2486	NEUTRAL	NA	6	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,TUBAL3,UCN3"
TCGA.AA.3930.01A	10	5008055	104557703	5437	0.0651	NEUTRAL	NA	533	Too-Many
TCGA.AA.A00N.01A	10	5037464	5045888	7	0.2024	NEUTRAL	NA	1	AKR1C2
TCGA.AA.3862.01A	10	5042527	5836801	79	0.3501	NEUTRAL	NA	11	"AKR1C2,AKR1C3,AKR1C4,ASB13,CALML3,CALML5,FAM208B,GDI2,NET1,TUBAL3,UCN3"
TCGA.AA.A010.01A	10	5042527	5855098	84	0.363	NEUTRAL	NA	11	"AKR1C2,AKR1C3,AKR1C4,ASB13,CALML3,CALML5,FAM208B,GDI2,NET1,TUBAL3,UCN3"
TCGA.A6.3808.01A	10	5042527	18840705	784	0.0782	NEUTRAL	NA	72	"ACBD7,AKR1C2,AKR1C3,AKR1C4,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,HACD1,HSPA14,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,MCM10,MEIG1,MRC1,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PHYH,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM"
TCGA.AA.3850	10	5139814	6650774	727	0.31515	NEUTRAL	NA	17	"AKR1C3,AKR1C4,ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,IL15RA,IL2RA,NET1,PFKFB3,PRKCQ,RBM17,TUBAL3,UCN3"
TCGA.AG.A011.01A	10	5140935	5200750	9	-0.3072	NEUTRAL	NA	1	AKR1C3
TCGA.AG.A011.01A	10	5202007	47915835	1660	0.0382	NEUTRAL	NA	173	Too-Many
TCGA.AA.3861.01A	10	5258614	32807310	1400	-0.2323	NEUTRAL	NA	125	Too-Many
TCGA.AA.3941	10	5273766	8795244	1828	0.2947	NEUTRAL	NA	22	"ANKRD16,ASB13,ATP5C1,CALML3,CALML5,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,NET1,PFKFB3,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3"
TCGA.AZ.4614	10	5396723	135434550	44114	-0.1214	NEUTRAL	NA	699	Too-Many
TCGA.A6.A567	10	5403808	9743180	2122	0.3153	NEUTRAL	NA	22	"ANKRD16,ASB13,ATP5C1,CALML3,CALML5,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,NET1,PFKFB3,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3"
TCGA.AM.5820	10	5407870	5490931	24	0.0302	NEUTRAL	NA	3	"NET1,TUBAL3,UCN3"
TCGA.CK.5914.01A	10	5442766	5944946	62	-0.5055	NEUTRAL	NA	9	"ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,NET1,TUBAL3"
TCGA.AG.A01N.01A	10	5446655	5966245	67	-0.3941	NEUTRAL	NA	9	"ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,NET1,TUBAL3"
TCGA.AA.3667	10	5464705	135434550	44627	-0.0165	NEUTRAL	NA	697	Too-Many
TCGA.AA.3509.01A	10	5471061	17813247	697	-0.1503	NEUTRAL	NA	63	"ACBD7,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,HACD1,HSPA14,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PHYH,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.AZ.4684.01A	10	5471061	27342233	1111	-0.1585	NEUTRAL	NA	99	"ABI1,ACBD7,ANKRD16,ANKRD26,APBB1IP,ARHGAP21,ARL5B,ARMC3,ASB13,ATP5C1,BEND7,BMI1,C10orf111,C10orf113,C10orf67,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CASC10,CCDC3,CDC123,CDNF,CELF2,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DHTKD1,DNAJC1,EBLN1,ECHDC3,ENKUR,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GAD2,GATA3,GDI2,GPR158,HACD1,HSPA14,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIAA1217,KIN,MALRD1,MCM10,MEIG1,MLLT10,MRC1,MSRB2,MYO3A,NEBL,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,OTUD1,PDSS1,PFKFB3,PHYH,PIP4K2A,PLXDC2,PRKCQ,PROSER2,PRPF18,PRTFDC1,PTER,PTF1A,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,SUV39H2,TAF3,THNSL1,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.AA.A00N.01A	10	5496904	5693138	10	-0.2659	NEUTRAL	NA	4	"ASB13,CALML3,CALML5,NET1"
TCGA.G4.6317	10	5634774	30101218	10302	0.1481	NEUTRAL	NA	109	Too-Many
TCGA.AM.5820	10	5652738	6393259	364	-0.0313	NEUTRAL	NA	9	"ANKRD16,ASB13,FAM208B,FBXO18,GDI2,IL15RA,IL2RA,PFKFB3,RBM17"
TCGA.AG.3909.01A	10	5693138	5790623	13	-0.09	NEUTRAL	NA	2	"ASB13,FAM208B"
TCGA.AA.A00N.01A	10	5694799	5810129	22	0.3221	NEUTRAL	NA	3	"ASB13,FAM208B,GDI2"
TCGA.AG.3891.01A	10	5788490	8105904	189	0.0874	NEUTRAL	NA	16	"ANKRD16,ATP5C1,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,PFKFB3,PRKCQ,RBM17,SFMBT2,TAF3"
TCGA.AA.A02E.01A	10	5788490	13494499	356	-0.26	NEUTRAL	NA	33	"ANKRD16,ATP5C1,BEND7,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,MCM10,NUDT5,OPTN,PFKFB3,PHYH,PRKCQ,PROSER2,RBM17,SEC61A2,SEPHS1,SFMBT2,TAF3,UCMA,UPF2,USP6NL"
TCGA.AG.3909.01A	10	5798529	5947982	26	-0.4781	NEUTRAL	NA	4	"ANKRD16,FAM208B,FBXO18,GDI2"
TCGA.AA.A00N.01A	10	5815758	5827768	3	-0.1587	NEUTRAL	NA	1	GDI2
TCGA.AA.3862.01A	10	5838686	17813247	656	-0.1389	NEUTRAL	NA	58	"ACBD7,ANKRD16,ATP5C1,BEND7,C10orf111,C1QL3,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FBXO18,FRMD4A,GATA3,GDI2,HACD1,HSPA14,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,MCM10,MEIG1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PHYH,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.AG.3906.01A	10	5931004	11316960	172	0.0597	NEUTRAL	NA	15	"ANKRD16,ATP5C1,CELF2,FBXO18,GATA3,IL15RA,IL2RA,ITIH2,ITIH5,KIN,PFKFB3,PRKCQ,RBM17,SFMBT2,TAF3"
TCGA.CK.5914.01A	10	5947982	12940364	294	-0.1969	NEUTRAL	NA	24	"ATP5C1,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,FBXO18,GATA3,IL15RA,IL2RA,ITIH2,ITIH5,KIN,NUDT5,PFKFB3,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,UPF2,USP6NL"
TCGA.AG.3909.01A	10	5950874	6104002	29	0.1262	NEUTRAL	NA	3	"FBXO18,IL15RA,IL2RA"
TCGA.AG.4009.01A	10	5955656	6067759	26	0.0089	NEUTRAL	NA	3	"FBXO18,IL15RA,IL2RA"
TCGA.AA.A010.01A	10	5958224	6104002	25	0.1194	NEUTRAL	NA	3	"FBXO18,IL15RA,IL2RA"
TCGA.AG.A01N.01A	10	5978370	96094367	3826	-0.2007	NEUTRAL	NA	411	Too-Many
TCGA.AA.3531	10	6084607	6936348	491	0.0048	NEUTRAL	NA	4	"IL2RA,PFKFB3,PRKCQ,RBM17"
TCGA.AG.4009.01A	10	6104002	6262594	18	-0.3612	NEUTRAL	NA	3	"IL2RA,PFKFB3,RBM17"
TCGA.AG.A00C.01A	10	6138981	6274785	25	0.3281	NEUTRAL	NA	2	"PFKFB3,RBM17"
TCGA.AG.4009.01A	10	6263294	8051029	108	0.0021	NEUTRAL	NA	8	"ATP5C1,ITIH2,ITIH5,KIN,PFKFB3,PRKCQ,SFMBT2,TAF3"
TCGA.AA.3844	10	6364623	6410131	28	-0.3117	NEUTRAL	NA	0	None
TCGA.AA.3844	10	6411070	6650425	118	0.1069	NEUTRAL	NA	1	PRKCQ
TCGA.AG.A00C.01A	10	6470119	6556942	17	-0.3095	NEUTRAL	NA	1	PRKCQ
TCGA.AG.3909.01A	10	6470119	7205682	18	0.2656	NEUTRAL	NA	2	"PRKCQ,SFMBT2"
TCGA.AA.A01Q.01A	10	6470119	13672220	264	0.0768	NEUTRAL	NA	26	"ATP5C1,BEND7,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,GATA3,ITIH2,ITIH5,KIN,MCM10,NUDT5,OPTN,PHYH,PRKCQ,PROSER2,PRPF18,SEC61A2,SEPHS1,SFMBT2,TAF3,UCMA,UPF2,USP6NL"
TCGA.AA.A02K.01A	10	6556953	8132812	99	0.1681	NEUTRAL	NA	8	"ATP5C1,GATA3,ITIH2,ITIH5,KIN,PRKCQ,SFMBT2,TAF3"
TCGA.AA.3844	10	6650759	6695484	24	-0.3323	NEUTRAL	NA	0	None
TCGA.AA.3850	10	6657774	7232268	370	0.08485	NEUTRAL	NA	1	SFMBT2
TCGA.A6.3807	10	6664667	6969256	204	-0.0342	NEUTRAL	NA	0	None
TCGA.AA.3844	10	6705912	6940377	160	-0.0053	NEUTRAL	NA	0	None
TCGA.AA.3666	10	6863525	9936632	1460	0.0224	NEUTRAL	NA	7	"ATP5C1,GATA3,ITIH2,ITIH5,KIN,SFMBT2,TAF3"
TCGA.AA.3844	10	6941671	7006905	54	-0.0279	NEUTRAL	NA	0	None
TCGA.AA.3977	10	6945969	7112075	121	-0.027	NEUTRAL	NA	0	None
TCGA.A6.3807	10	6969815	9549264	1267	-0.4123	NEUTRAL	NA	7	"ATP5C1,GATA3,ITIH2,ITIH5,KIN,SFMBT2,TAF3"
TCGA.AA.3844	10	7015813	8552195	754	-0.0424	NEUTRAL	NA	7	"ATP5C1,GATA3,ITIH2,ITIH5,KIN,SFMBT2,TAF3"
TCGA.CM.6163	10	7019816	7036893	12	-0.4381	NEUTRAL	NA	0	None
TCGA.CM.6163	10	7036948	135434550	43619	0.0393	NEUTRAL	NA	684	Too-Many
TCGA.AA.3517	10	7037584	7154863	78	-0.299	NEUTRAL	NA	0	None
TCGA.AA.3977	10	7112585	7140465	19	-0.4127	NEUTRAL	NA	0	None
TCGA.AG.3883	10	7131801	53353306	14979	-0.0645	NEUTRAL	NA	190	Too-Many
TCGA.AA.3977	10	7141962	31611255	10087	0.0499	NEUTRAL	NA	105	Too-Many
TCGA.5M.AATA	10	7149888	135434550	43664	-0.0668	NEUTRAL	NA	684	Too-Many
TCGA.AA.3517	10	7154920	47742075	13449	0.0091	NEUTRAL	NA	156	Too-Many
TCGA.AA.A00N.01A	10	7205682	7750948	41	-0.3173	NEUTRAL	NA	3	"ITIH2,ITIH5,SFMBT2"
TCGA.AG.A00C.01A	10	7205682	7750948	37	0.0105	NEUTRAL	NA	3	"ITIH2,ITIH5,SFMBT2"
TCGA.AA.3850	10	7235804	7528180	128	0.36995	NEUTRAL	NA	1	SFMBT2
TCGA.F5.6813	10	7235804	135434550	43608	-0.0019	NEUTRAL	NA	684	Too-Many
TCGA.AA.3531	10	7264226	53027555	14752	-0.0013	NEUTRAL	NA	190	Too-Many
TCGA.AG.3909.01A	10	7290458	7423713	7	-0.0269	NEUTRAL	NA	1	SFMBT2
TCGA.AA.3850	10	7530893	8218068	293	0.34715	NEUTRAL	NA	6	"ATP5C1,GATA3,ITIH2,ITIH5,KIN,TAF3"
TCGA.AA.A01K.01A	10	7627816	17272569	476	-0.0116	NEUTRAL	NA	45	"ACBD7,ATP5C1,BEND7,C10orf111,C1QL3,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FRMD4A,GATA3,HSPA14,ITGA8,ITIH2,ITIH5,KIN,MCM10,MEIG1,NMT2,NUDT5,OLAH,OPTN,PHYH,PROSER2,PRPF18,PTER,RPP38,RSU1,SEC61A2,SEPHS1,SUV39H2,TAF3,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.AG.3909.01A	10	7657917	7805630	32	0.0364	NEUTRAL	NA	3	"ITIH2,ITIH5,KIN"
TCGA.AG.A00C.01A	10	7755097	7788538	16	-0.3802	NEUTRAL	NA	1	ITIH2
TCGA.AG.A00C.01A	10	7791102	7811131	7	-0.0554	NEUTRAL	NA	2	"ITIH2,KIN"
TCGA.AG.A00C.01A	10	7816738	8100220	25	0.3306	NEUTRAL	NA	4	"ATP5C1,GATA3,KIN,TAF3"
TCGA.AA.A00N.01A	10	7860626	13330318	182	-0.1453	NEUTRAL	NA	17	"CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,GATA3,MCM10,NUDT5,OPTN,PHYH,PROSER2,SEC61A2,TAF3,UCMA,UPF2,USP6NL"
TCGA.AG.3909.01A	10	8005881	12240683	111	-0.0707	NEUTRAL	NA	11	"CDC123,CELF2,DHTKD1,ECHDC3,GATA3,NUDT5,PROSER2,SEC61A2,TAF3,UPF2,USP6NL"
TCGA.AG.A00C.01A	10	8105904	27366265	837	-0.0404	NEUTRAL	NA	80	"ABI1,ACBD7,ANKRD26,APBB1IP,ARHGAP21,ARL5B,ARMC3,BEND7,BMI1,C10orf111,C10orf113,C10orf67,C1QL3,CACNB2,CAMK1D,CASC10,CCDC3,CDC123,CDNF,CELF2,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DHTKD1,DNAJC1,EBLN1,ECHDC3,ENKUR,FAM107B,FAM171A1,FAM188A,FRMD4A,GAD2,GATA3,GPR158,HACD1,HSPA14,ITGA8,KIAA1217,MALRD1,MCM10,MEIG1,MLLT10,MRC1,MSRB2,MYO3A,NEBL,NMT2,NSUN6,NUDT5,OLAH,OPTN,OTUD1,PDSS1,PHYH,PIP4K2A,PLXDC2,PROSER2,PRPF18,PRTFDC1,PTER,PTF1A,RPP38,RSU1,SEC61A2,SEPHS1,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,SUV39H2,THNSL1,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.AG.3891.01A	10	8111396	11574103	31	-0.2291	NEUTRAL	NA	3	"CELF2,GATA3,USP6NL"
TCGA.AA.3850	10	8220710	8575733	224	0.09055	NEUTRAL	NA	0	None
TCGA.AA.3811	10	8552195	9085339	292	-0.0913	NEUTRAL	NA	0	None
TCGA.AA.3844	10	8561879	10522357	847	-0.4129	NEUTRAL	NA	0	None
TCGA.AA.3850	10	8575887	10731780	967	-0.38445	NEUTRAL	NA	0	None
TCGA.AA.3982	10	8576160	10518449	818	-0.3159	NEUTRAL	NA	0	None
TCGA.QL.A97D	10	8581782	9240262	330	-0.1301	NEUTRAL	NA	0	None
TCGA.AA.3941	10	8795868	10518449	683	-0.3989	NEUTRAL	NA	0	None
TCGA.AA.3811	10	9089802	9424264	164	-0.0793	NEUTRAL	NA	0	None
TCGA.AA.3872	10	9101184	9512091	183	0.3386	NEUTRAL	NA	0	None
TCGA.AA.3973	10	9101184	12580663	1453	0.041	NEUTRAL	NA	10	"CAMK1D,CDC123,CELF2,DHTKD1,ECHDC3,NUDT5,PROSER2,SEC61A2,UPF2,USP6NL"
TCGA.AA.3530	10	9101184	71344586	20076	0.0087	NEUTRAL	NA	238	Too-Many
TCGA.D5.6922	10	9200101	21908802	5506	0.3005	NEUTRAL	NA	55	"ACBD7,ARL5B,BEND7,C10orf111,C10orf113,C1QL3,CACNB2,CAMK1D,CASC10,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MALRD1,MCM10,MEIG1,MLLT10,MRC1,NEBL,NMT2,NSUN6,NUDT5,OLAH,OPTN,PHYH,PLXDC2,PROSER2,PRPF18,PTER,RPP38,RSU1,SEC61A2,SEPHS1,SKIDA1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.QL.A97D	10	9241269	26674479	7065	0.1668	NEUTRAL	NA	75	"ACBD7,ARHGAP21,ARL5B,ARMC3,BEND7,BMI1,C10orf111,C10orf113,C10orf67,C1QL3,CACNB2,CAMK1D,CASC10,CCDC3,CDC123,CDNF,CELF2,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DHTKD1,DNAJC1,EBLN1,ECHDC3,ENKUR,FAM107B,FAM171A1,FAM188A,FRMD4A,GAD2,GPR158,HACD1,HSPA14,ITGA8,KIAA1217,MALRD1,MCM10,MEIG1,MLLT10,MRC1,MSRB2,MYO3A,NEBL,NMT2,NSUN6,NUDT5,OLAH,OPTN,OTUD1,PHYH,PIP4K2A,PLXDC2,PROSER2,PRPF18,PRTFDC1,PTER,PTF1A,RPP38,RSU1,SEC61A2,SEPHS1,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,SUV39H2,THNSL1,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.A6.3807	10	9550385	19502816	4339	-0.0092	NEUTRAL	NA	49	"ACBD7,ARL5B,BEND7,C10orf111,C1QL3,CACNB2,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MALRD1,MCM10,MEIG1,MRC1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PHYH,PROSER2,PRPF18,PTER,RPP38,RSU1,SEC61A2,SEPHS1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.D5.6535	10	9592610	37239564	10775	-0.0013	NEUTRAL	NA	110	Too-Many
TCGA.AA.3811	10	9620150	11197076	727	-0.0045	NEUTRAL	NA	1	CELF2
TCGA.AA.3845	10	9795915	11196368	686	0.3497	NEUTRAL	NA	1	CELF2
TCGA.AA.A01T	10	9975742	19157077	4098	0.0948	NEUTRAL	NA	48	"ACBD7,ARL5B,BEND7,C10orf111,C1QL3,CACNB2,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MCM10,MEIG1,MRC1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PHYH,PROSER2,PRPF18,PTER,RPP38,RSU1,SEC61A2,SEPHS1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.AG.3726	10	9993264	10284444	120	-0.0338	NEUTRAL	NA	0	None
TCGA.AA.3941	10	10522312	11242470	429	0.1075	NEUTRAL	NA	1	CELF2
TCGA.AA.3982	10	10522312	42433539	10714	0.0734	NEUTRAL	NA	116	Too-Many
TCGA.AA.3844	10	10527344	10593397	53	0.0037	NEUTRAL	NA	0	None
TCGA.AA.3844	10	10595238	10731676	91	-0.248	NEUTRAL	NA	0	None
TCGA.AA.3844	10	10731780	10777084	22	0.1985	NEUTRAL	NA	0	None
TCGA.AA.3850	10	10732066	11246336	284	0.03135	NEUTRAL	NA	1	CELF2
TCGA.AA.3844	10	10789589	14874691	2052	0.0657	NEUTRAL	NA	21	"BEND7,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DHTKD1,ECHDC3,FAM107B,FRMD4A,MCM10,NUDT5,OPTN,PHYH,PROSER2,PRPF18,SEC61A2,SEPHS1,UCMA,UPF2,USP6NL"
TCGA.AA.3811	10	11197673	18388276	3112	0.2686	NEUTRAL	NA	45	"ACBD7,BEND7,C10orf111,C1QL3,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MCM10,MEIG1,MRC1,NMT2,NUDT5,OLAH,OPTN,PHYH,PROSER2,PRPF18,PTER,RPP38,RSU1,SEC61A2,SEPHS1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.AA.3941	10	11246268	19057209	3398	0.334	NEUTRAL	NA	48	"ACBD7,ARL5B,BEND7,C10orf111,C1QL3,CACNB2,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MCM10,MEIG1,MRC1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PHYH,PROSER2,PRPF18,PTER,RPP38,RSU1,SEC61A2,SEPHS1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.AA.3850	10	11247962	15609698	2081	0.34155	NEUTRAL	NA	32	"ACBD7,BEND7,C10orf111,CAMK1D,CCDC3,CDC123,CDNF,CELF2,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FRMD4A,HSPA14,ITGA8,MCM10,MEIG1,NMT2,NUDT5,OLAH,OPTN,PHYH,PROSER2,PRPF18,RPP38,SEC61A2,SEPHS1,SUV39H2,UCMA,UPF2,USP6NL"
TCGA.AG.4009.01A	10	11259332	13658360	185	-0.0622	NEUTRAL	NA	18	"BEND7,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,MCM10,NUDT5,OPTN,PHYH,PROSER2,PRPF18,SEC61A2,SEPHS1,UCMA,UPF2,USP6NL"
TCGA.AG.3906.01A	10	11330329	11574103	20	-0.3302	NEUTRAL	NA	2	"CELF2,USP6NL"
TCGA.AM.5820	10	11577665	14106313	1188	-0.0615	NEUTRAL	NA	18	"BEND7,CAMK1D,CCDC3,CDC123,DHTKD1,ECHDC3,FRMD4A,MCM10,NUDT5,OPTN,PHYH,PROSER2,PRPF18,SEC61A2,SEPHS1,UCMA,UPF2,USP6NL"
TCGA.AG.3891.01A	10	11789311	14478536	187	0.217	NEUTRAL	NA	17	"BEND7,CAMK1D,CCDC3,CDC123,DHTKD1,ECHDC3,FRMD4A,MCM10,NUDT5,OPTN,PHYH,PROSER2,PRPF18,SEC61A2,SEPHS1,UCMA,UPF2"
TCGA.AG.3906.01A	10	11962979	12077046	21	-0.0377	NEUTRAL	NA	1	UPF2
TCGA.AG.3906.01A	10	12197282	13370299	89	0.1086	NEUTRAL	NA	10	"CAMK1D,CCDC3,CDC123,MCM10,NUDT5,OPTN,PHYH,SEC61A2,SEPHS1,UCMA"
TCGA.AG.A032.01A	10	12219740	24880787	592	-0.1157	NEUTRAL	NA	62	"ACBD7,ARHGAP21,ARL5B,ARMC3,BEND7,BMI1,C10orf111,C10orf113,C10orf67,C1QL3,CACNB2,CAMK1D,CASC10,CCDC3,CDC123,CDNF,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DNAJC1,EBLN1,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,KIAA1217,MALRD1,MCM10,MEIG1,MLLT10,MRC1,MSRB2,NEBL,NMT2,NSUN6,NUDT5,OLAH,OPTN,OTUD1,PHYH,PIP4K2A,PLXDC2,PRPF18,PTER,PTF1A,RPP38,RSU1,SEPHS1,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,UCMA,VIM"
TCGA.AG.3909.01A	10	12292262	12833108	6	0.2205	NEUTRAL	NA	2	"CAMK1D,CDC123"
TCGA.AA.3875	10	12364540	14653244	1304	-0.3783	NEUTRAL	NA	11	"BEND7,CAMK1D,CCDC3,FAM107B,FRMD4A,MCM10,OPTN,PHYH,PRPF18,SEPHS1,UCMA"
TCGA.AG.3726	10	12580514	12583252	8	-0.2722	NEUTRAL	NA	1	CAMK1D
TCGA.AG.3726	10	12583311	12592966	7	0.3447	NEUTRAL	NA	1	CAMK1D
TCGA.A6.5665	10	12584208	16790230	2049	-0.187	NEUTRAL	NA	27	"ACBD7,BEND7,C10orf111,C1QL3,CAMK1D,CCDC3,CDNF,DCLRE1C,FAM107B,FAM171A1,FAM188A,FRMD4A,HSPA14,ITGA8,MCM10,MEIG1,NMT2,OLAH,OPTN,PHYH,PRPF18,PTER,RPP38,RSU1,SEPHS1,SUV39H2,UCMA"
TCGA.AA.3973	10	12584512	12699534	68	0.1523	NEUTRAL	NA	1	CAMK1D
TCGA.AG.3726	10	12594520	12597489	5	-0.2908	NEUTRAL	NA	1	CAMK1D
TCGA.DY.A1DG	10	12659283	46215430	10917	-0.0107	NEUTRAL	NA	128	Too-Many
TCGA.AA.3973	10	12704190	135434550	41173	0.0183	NEUTRAL	NA	668	Too-Many
TCGA.AG.3909.01A	10	12856147	13224881	27	-0.4665	NEUTRAL	NA	4	"CAMK1D,CCDC3,MCM10,OPTN"
TCGA.AA.3556	10	13080466	30086143	6719	0.031	NEUTRAL	NA	82	"ABI1,ACBD5,ACBD7,ANKRD26,APBB1IP,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BEND7,BMI1,C10orf111,C10orf113,C10orf126,C10orf67,C1QL3,CACNB2,CASC10,CCDC3,CDNF,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DNAJC1,EBLN1,ENKUR,FAM107B,FAM171A1,FAM188A,FRMD4A,GAD2,GPR158,HACD1,HSPA14,ITGA8,KIAA1217,LYZL1,MALRD1,MASTL,MCM10,MEIG1,MKX,MLLT10,MPP7,MRC1,MSRB2,MYO3A,NEBL,NMT2,NSUN6,OLAH,OPTN,OTUD1,PDSS1,PHYH,PIP4K2A,PLXDC2,PRPF18,PRTFDC1,PTCHD3,PTER,PTF1A,RAB18,RPP38,RSU1,SEPHS1,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,SUV39H2,SVIL,THNSL1,TMEM236,TRDMT1,UCMA,VIM,WAC,YME1L1"
TCGA.AG.3909.01A	10	13228123	13330318	18	0.2276	NEUTRAL	NA	3	"MCM10,PHYH,UCMA"
TCGA.AA.A00D.01A	10	13230829	20335751	368	-0.0064	NEUTRAL	NA	38	"ACBD7,ARL5B,BEND7,C10orf111,C1QL3,CACNB2,CDNF,CUBN,DCLRE1C,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MALRD1,MCM10,MEIG1,MRC1,NMT2,NSUN6,OLAH,PHYH,PLXDC2,PRPF18,PTER,RPP38,RSU1,SEPHS1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,UCMA,VIM"
TCGA.CK.5914.01A	10	13320230	13716870	46	-0.4638	NEUTRAL	NA	5	"BEND7,FRMD4A,PHYH,PRPF18,SEPHS1"
TCGA.AA.A01F.01A	10	13320230	50732052	1248	0.1377	NEUTRAL	NA	153	Too-Many
TCGA.AG.3909.01A	10	13364833	13712359	34	-0.2892	NEUTRAL	NA	4	"BEND7,FRMD4A,PRPF18,SEPHS1"
TCGA.A6.A567	10	13407988	14408229	594	0.2832	NEUTRAL	NA	3	"BEND7,FRMD4A,PRPF18"
TCGA.AA.A010.01A	10	13481145	13658360	18	0.3352	NEUTRAL	NA	2	"BEND7,PRPF18"
TCGA.AG.3906.01A	10	13481145	13672220	19	-0.0181	NEUTRAL	NA	2	"BEND7,PRPF18"
TCGA.AG.A02G.01A	10	13483669	70986926	1998	-0.0104	NEUTRAL	NA	218	Too-Many
TCGA.AA.A02E.01A	10	13522857	22217937	425	0.1506	NEUTRAL	NA	40	"ACBD7,ARL5B,BEND7,C10orf111,C10orf113,C1QL3,CACNB2,CASC10,CDNF,CUBN,DCLRE1C,DNAJC1,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MALRD1,MEIG1,MLLT10,MRC1,NEBL,NMT2,NSUN6,OLAH,PLXDC2,PRPF18,PTER,RPP38,RSU1,SKIDA1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,VIM"
TCGA.AG.3909.01A	10	13716870	14816271	20	0.3343	NEUTRAL	NA	2	"FAM107B,FRMD4A"
TCGA.AA.A01Q.01A	10	13716870	22606766	392	0.1395	NEUTRAL	NA	41	"ACBD7,ARL5B,C10orf111,C10orf113,C1QL3,CACNB2,CASC10,CDNF,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DNAJC1,EBLN1,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MALRD1,MEIG1,MLLT10,MRC1,NEBL,NMT2,NSUN6,OLAH,PLXDC2,PTER,RPP38,RSU1,SKIDA1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,VIM"
TCGA.AG.3906.01A	10	13735780	13900778	13	0.3278	NEUTRAL	NA	1	FRMD4A
TCGA.AG.4009.01A	10	13735780	14890536	24	0.0157	NEUTRAL	NA	4	"CDNF,FAM107B,FRMD4A,HSPA14"
TCGA.AA.A010.01A	10	13735780	21785429	409	0.1573	NEUTRAL	NA	35	"ACBD7,ARL5B,C10orf111,C10orf113,C1QL3,CACNB2,CASC10,CDNF,CUBN,DCLRE1C,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MALRD1,MEIG1,MRC1,NEBL,NMT2,NSUN6,OLAH,PLXDC2,PTER,RPP38,RSU1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,VIM"
TCGA.AA.3524	10	14028085	126266373	36663	-0.0054	NEUTRAL	NA	607	Too-Many
TCGA.AM.5820	10	14112642	27231609	4979	-0.1002	NEUTRAL	NA	60	"ABI1,ACBD7,APBB1IP,ARHGAP21,ARL5B,ARMC3,BMI1,C10orf111,C10orf113,C10orf67,C1QL3,CACNB2,CASC10,CDNF,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DNAJC1,EBLN1,ENKUR,FAM107B,FAM171A1,FAM188A,FRMD4A,GAD2,GPR158,HACD1,HSPA14,ITGA8,KIAA1217,MALRD1,MEIG1,MLLT10,MRC1,MSRB2,MYO3A,NEBL,NMT2,NSUN6,OLAH,OTUD1,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTER,PTF1A,RPP38,RSU1,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,SUV39H2,THNSL1,TMEM236,TRDMT1,VIM"
TCGA.AG.3726	10	14258277	135434550	40323	0.0008	NEUTRAL	NA	659	Too-Many
TCGA.A6.A567	10	14409668	14807750	245	-0.1092	NEUTRAL	NA	1	FAM107B
TCGA.AA.3833	10	14444559	45357290	9660	0.0027	NEUTRAL	NA	109	Too-Many
TCGA.AG.3906.01A	10	14478536	14968781	30	-0.1323	NEUTRAL	NA	5	"CDNF,DCLRE1C,FAM107B,HSPA14,SUV39H2"
TCGA.AG.3891.01A	10	14563140	17276685	213	-0.0851	NEUTRAL	NA	20	"ACBD7,C10orf111,C1QL3,CDNF,CUBN,DCLRE1C,FAM107B,FAM171A1,FAM188A,HSPA14,ITGA8,MEIG1,NMT2,OLAH,PTER,RPP38,RSU1,SUV39H2,TRDMT1,VIM"
TCGA.CK.5914.01A	10	14572036	14951088	29	-0.4607	NEUTRAL	NA	5	"CDNF,DCLRE1C,FAM107B,HSPA14,SUV39H2"
TCGA.AA.3875	10	14658463	122880693	34864	0.012	NEUTRAL	NA	580	Too-Many
TCGA.A6.A567	10	14808695	14951660	43	0.3333	NEUTRAL	NA	5	"CDNF,DCLRE1C,FAM107B,HSPA14,SUV39H2"
TCGA.AA.3666	10	14842946	26532760	4289	0.0716	NEUTRAL	NA	55	"ACBD7,ARHGAP21,ARL5B,ARMC3,BMI1,C10orf111,C10orf113,C10orf67,C1QL3,CACNB2,CASC10,CDNF,COMMD3,COMMD3-BMI1,CUBN,DCLRE1C,DNAJC1,EBLN1,ENKUR,FAM171A1,FAM188A,GAD2,GPR158,HACD1,HSPA14,ITGA8,KIAA1217,MALRD1,MEIG1,MLLT10,MRC1,MSRB2,MYO3A,NEBL,NMT2,NSUN6,OLAH,OTUD1,PIP4K2A,PLXDC2,PRTFDC1,PTER,PTF1A,RPP38,RSU1,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,SUV39H2,THNSL1,TMEM236,TRDMT1,VIM"
TCGA.AG.3909.01A	10	14861931	14879779	4	-0.2689	NEUTRAL	NA	1	CDNF
TCGA.AA.3939.01A	10	14879779	14961688	24	-0.1827	NEUTRAL	NA	4	"CDNF,DCLRE1C,HSPA14,SUV39H2"
TCGA.AA.3844	10	14917473	16038228	426	0.0197	NEUTRAL	NA	11	"ACBD7,C10orf111,DCLRE1C,FAM171A1,FAM188A,ITGA8,MEIG1,NMT2,OLAH,RPP38,SUV39H2"
TCGA.AG.A01W.01A	10	14920351	15004944	20	0.3329	NEUTRAL	NA	3	"DCLRE1C,MEIG1,SUV39H2"
TCGA.AG.3909.01A	10	14938853	15115044	28	-0.1691	NEUTRAL	NA	4	"DCLRE1C,MEIG1,OLAH,SUV39H2"
TCGA.AA.A00N.01A	10	14943080	15107535	25	-0.1937	NEUTRAL	NA	4	"DCLRE1C,MEIG1,OLAH,SUV39H2"
TCGA.AG.4009.01A	10	14950405	15702803	67	0.0251	NEUTRAL	NA	9	"ACBD7,C10orf111,DCLRE1C,FAM171A1,ITGA8,MEIG1,NMT2,OLAH,RPP38"
TCGA.CK.5914.01A	10	14961688	17216532	187	0.1632	NEUTRAL	NA	15	"ACBD7,C10orf111,C1QL3,CUBN,DCLRE1C,FAM171A1,FAM188A,ITGA8,MEIG1,NMT2,OLAH,PTER,RPP38,RSU1,TRDMT1"
TCGA.A6.A567	10	14962863	15235644	79	-0.1268	NEUTRAL	NA	7	"ACBD7,C10orf111,DCLRE1C,MEIG1,NMT2,OLAH,RPP38"
TCGA.AA.3939.01A	10	14964926	17756512	222	0.0523	NEUTRAL	NA	19	"ACBD7,C10orf111,C1QL3,CUBN,DCLRE1C,FAM171A1,FAM188A,HACD1,ITGA8,MEIG1,NMT2,OLAH,PTER,RPP38,RSU1,ST8SIA6,STAM,TRDMT1,VIM"
TCGA.AG.3906.01A	10	14969963	15120895	21	0.2738	NEUTRAL	NA	4	"ACBD7,DCLRE1C,MEIG1,OLAH"
TCGA.AG.A01W.01A	10	15008779	15217263	33	-0.2392	NEUTRAL	NA	6	"ACBD7,C10orf111,MEIG1,NMT2,OLAH,RPP38"
TCGA.AG.3906.01A	10	15130620	21461263	301	-0.0475	NEUTRAL	NA	26	"ACBD7,ARL5B,C10orf111,C10orf113,C1QL3,CACNB2,CUBN,FAM171A1,FAM188A,HACD1,ITGA8,MALRD1,MRC1,NEBL,NMT2,NSUN6,PLXDC2,PTER,RPP38,RSU1,SLC39A12,ST8SIA6,STAM,TMEM236,TRDMT1,VIM"
TCGA.AG.3909.01A	10	15151124	16528349	65	0.0065	NEUTRAL	NA	5	"FAM171A1,FAM188A,ITGA8,NMT2,PTER"
TCGA.AG.A01W.01A	10	15223376	15942177	54	0.1644	NEUTRAL	NA	3	"FAM171A1,FAM188A,ITGA8"
TCGA.AG.A00Y.01A	10	15262891	69969996	1775	-0.0986	NEUTRAL	NA	188	Too-Many
TCGA.AA.3850	10	15615301	15642608	13	-0.01665	NEUTRAL	NA	1	ITGA8
TCGA.AA.3850	10	15654057	15810353	78	0.24805	NEUTRAL	NA	1	ITGA8
TCGA.AG.4009.01A	10	15713528	15760724	7	-0.385	NEUTRAL	NA	1	ITGA8
TCGA.AA.3850	10	15810809	16257822	110	-0.24965	NEUTRAL	NA	1	FAM188A
TCGA.AG.4009.01A	10	15820944	16546967	19	-0.0852	NEUTRAL	NA	2	"FAM188A,PTER"
TCGA.DM.A28M.01A	10	15889804	17898225	136	-0.0706	NEUTRAL	NA	12	"C1QL3,CUBN,FAM188A,HACD1,MRC1,PTER,RSU1,ST8SIA6,STAM,TMEM236,TRDMT1,VIM"
TCGA.AA.3844	10	16051096	18388276	845	-0.0908	NEUTRAL	NA	12	"C1QL3,CUBN,HACD1,MRC1,PTER,RSU1,SLC39A12,ST8SIA6,STAM,TMEM236,TRDMT1,VIM"
TCGA.AA.3850	10	16267473	17183673	465	0.16835	NEUTRAL	NA	4	"C1QL3,CUBN,PTER,RSU1"
TCGA.AA.3989	10	16347418	16749678	190	-0.2695	NEUTRAL	NA	3	"C1QL3,PTER,RSU1"
TCGA.AG.3583	10	16383930	18369090	703	0.0102	NEUTRAL	NA	12	"C1QL3,CUBN,HACD1,MRC1,PTER,RSU1,SLC39A12,ST8SIA6,STAM,TMEM236,TRDMT1,VIM"
TCGA.AG.3909.01A	10	16562427	16990425	41	0.0184	NEUTRAL	NA	3	"C1QL3,CUBN,RSU1"
TCGA.AG.4009.01A	10	16562427	17905494	128	-0.1146	NEUTRAL	NA	10	"C1QL3,CUBN,HACD1,MRC1,RSU1,ST8SIA6,STAM,TMEM236,TRDMT1,VIM"
TCGA.AA.A02K.01A	10	16635367	16961916	32	0.3229	NEUTRAL	NA	2	"CUBN,RSU1"
TCGA.AA.3989	10	16762214	17342527	310	0.0595	NEUTRAL	NA	4	"CUBN,RSU1,TRDMT1,VIM"
TCGA.A6.5665	10	16828828	128493675	36244	-0.0044	NEUTRAL	NA	604	Too-Many
TCGA.AA.A02K.01A	10	16967189	16975040	4	-0.1587	NEUTRAL	NA	1	CUBN
TCGA.AG.A01W.01A	10	17064443	17312587	49	0.223	NEUTRAL	NA	3	"CUBN,TRDMT1,VIM"
TCGA.AG.3909.01A	10	17082994	17271421	39	0.0596	NEUTRAL	NA	3	"CUBN,TRDMT1,VIM"
TCGA.AA.3850	10	17196092	19052599	639	0.22345	NEUTRAL	NA	11	"ARL5B,CACNB2,HACD1,MRC1,NSUN6,SLC39A12,ST8SIA6,STAM,TMEM236,TRDMT1,VIM"
TCGA.AA.3681	10	17203969	135434550	38992	0.0104	NEUTRAL	NA	640	Too-Many
TCGA.AG.3891.01A	10	17277121	17645537	14	0.1577	NEUTRAL	NA	3	"HACD1,ST8SIA6,VIM"
TCGA.AA.3989	10	17347298	17394522	18	0.057	NEUTRAL	NA	1	ST8SIA6
TCGA.CK.5914.01A	10	17360614	17738750	19	0.1744	NEUTRAL	NA	3	"HACD1,ST8SIA6,STAM"
TCGA.AG.3909.01A	10	17362825	18905076	86	0.1445	NEUTRAL	NA	8	"CACNB2,HACD1,MRC1,NSUN6,SLC39A12,ST8SIA6,STAM,TMEM236"
TCGA.AA.A01K.01A	10	17362825	22217937	183	0.1939	NEUTRAL	NA	17	"ARL5B,C10orf113,CACNB2,CASC10,DNAJC1,HACD1,MALRD1,MLLT10,MRC1,NEBL,NSUN6,PLXDC2,SKIDA1,SLC39A12,ST8SIA6,STAM,TMEM236"
TCGA.AA.3989	10	17400904	18241165	156	0.0916	NEUTRAL	NA	6	"HACD1,MRC1,SLC39A12,ST8SIA6,STAM,TMEM236"
TCGA.AG.A01W.01A	10	17402832	17796519	24	0.1475	NEUTRAL	NA	4	"HACD1,ST8SIA6,STAM,TMEM236"
TCGA.A6.A567	10	17527094	18672144	326	-0.0599	NEUTRAL	NA	6	"CACNB2,HACD1,MRC1,SLC39A12,STAM,TMEM236"
TCGA.AG.3891.01A	10	17686259	22292125	175	-0.1561	NEUTRAL	NA	15	"ARL5B,C10orf113,CACNB2,CASC10,DNAJC1,MALRD1,MLLT10,MRC1,NEBL,NSUN6,PLXDC2,SKIDA1,SLC39A12,STAM,TMEM236"
TCGA.CK.5914.01A	10	17742148	18087551	21	-0.3656	NEUTRAL	NA	3	"MRC1,STAM,TMEM236"
TCGA.G4.6314	10	17775258	42523460	7309	-0.0096	NEUTRAL	NA	74	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BMI1,C10orf113,C10orf126,C10orf67,CACNB2,CASC10,CCDC7,CCNY,COMMD3,COMMD3-BMI1,CREM,CUL2,DNAJC1,EBLN1,ENKUR,EPC1,FZD8,GAD2,GJD4,GPR158,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MASTL,MKX,MLLT10,MPP7,MRC1,MSRB2,MTPAP,MTRNR2L7,MYO3A,NEBL,NRP1,NSUN6,OTUD1,PARD3,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,SKIDA1,SLC39A12,SPAG6,SVIL,THNSL1,TMEM236,WAC,YME1L1,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF37A,ZNF438"
TCGA.AG.A016.01A	10	17813247	17943950	18	-0.4961	NEUTRAL	NA	2	"MRC1,TMEM236"
TCGA.AG.A01W.01A	10	17853254	18238161	24	-0.2908	NEUTRAL	NA	2	"MRC1,TMEM236"
TCGA.DM.A28M.01A	10	17905494	18145144	11	-0.4882	NEUTRAL	NA	2	"MRC1,TMEM236"
TCGA.AG.4009.01A	10	17927232	21785429	107	-0.1335	NEUTRAL	NA	11	"ARL5B,C10orf113,CACNB2,CASC10,MALRD1,MRC1,NEBL,NSUN6,PLXDC2,SLC39A12,TMEM236"
TCGA.AA.3509.01A	10	18087551	37433857	817	0.0337	NEUTRAL	NA	69	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BMI1,C10orf113,C10orf126,C10orf67,CACNB2,CASC10,CCDC7,CCNY,COMMD3,COMMD3-BMI1,CREM,CUL2,DNAJC1,EBLN1,ENKUR,EPC1,FZD8,GAD2,GJD4,GPR158,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MASTL,MKX,MLLT10,MPP7,MRC1,MSRB2,MTPAP,MYO3A,NEBL,NRP1,NSUN6,OTUD1,PARD3,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,SKIDA1,SLC39A12,SPAG6,SVIL,THNSL1,TMEM236,WAC,YME1L1,ZEB1,ZNF438"
TCGA.AA.3939.01A	10	18112032	43678646	935	0.0262	NEUTRAL	NA	77	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BMI1,BMS1,C10orf113,C10orf126,C10orf67,CACNB2,CASC10,CCDC7,CCNY,COMMD3,COMMD3-BMI1,CREM,CSGALNACT2,CUL2,DNAJC1,EBLN1,ENKUR,EPC1,FZD8,GAD2,GJD4,GPR158,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MASTL,MKX,MLLT10,MPP7,MRC1,MSRB2,MTPAP,MTRNR2L7,MYO3A,NEBL,NRP1,NSUN6,OTUD1,PARD3,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,RET,SKIDA1,SLC39A12,SPAG6,SVIL,THNSL1,WAC,YME1L1,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A,ZNF438"
TCGA.CK.5914.01A	10	18138491	18331617	20	-0.1149	NEUTRAL	NA	2	"MRC1,SLC39A12"
TCGA.DM.A28M.01A	10	18169407	37433857	824	-0.1164	NEUTRAL	NA	68	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BMI1,C10orf113,C10orf126,C10orf67,CACNB2,CASC10,CCDC7,CCNY,COMMD3,COMMD3-BMI1,CREM,CUL2,DNAJC1,EBLN1,ENKUR,EPC1,FZD8,GAD2,GJD4,GPR158,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MASTL,MKX,MLLT10,MPP7,MRC1,MSRB2,MTPAP,MYO3A,NEBL,NRP1,NSUN6,OTUD1,PARD3,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,SKIDA1,SLC39A12,SPAG6,SVIL,THNSL1,WAC,YME1L1,ZEB1,ZNF438"
TCGA.CK.4952.01A	10	18238160	46007303	1043	-0.1322	NEUTRAL	NA	92	"ABI1,ACBD5,ALOX5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BMI1,BMS1,C10orf10,C10orf113,C10orf126,C10orf142,C10orf25,C10orf67,CACNB2,CASC10,CCDC7,CCNY,COMMD3,COMMD3-BMI1,CREM,CSGALNACT2,CUL2,CXCL12,DNAJC1,EBLN1,ENKUR,EPC1,FXYD4,FZD8,GAD2,GJD4,GPR158,HNRNPF,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MARCH8,MASTL,MKX,MLLT10,MPP7,MSRB2,MTPAP,MTRNR2L7,MYO3A,NEBL,NRP1,NSUN6,OR13A1,OTUD1,PARD3,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,RASGEF1A,RASSF4,RET,SKIDA1,SLC39A12,SPAG6,SVIL,THNSL1,TMEM72,WAC,YME1L1,ZEB1,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485"
TCGA.A6.3810.01A	10	18242155	22605298	159	0.1732	NEUTRAL	NA	13	"ARL5B,C10orf113,CACNB2,CASC10,DNAJC1,EBLN1,MALRD1,MLLT10,NEBL,NSUN6,PLXDC2,SKIDA1,SLC39A12"
TCGA.AA.3989	10	18242303	26969380	3236	-0.2498	NEUTRAL	NA	32	"APBB1IP,ARHGAP21,ARL5B,ARMC3,BMI1,C10orf113,C10orf67,CACNB2,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,GAD2,GPR158,KIAA1217,MALRD1,MLLT10,MSRB2,MYO3A,NEBL,NSUN6,OTUD1,PIP4K2A,PLXDC2,PRTFDC1,PTF1A,SKIDA1,SLC39A12,SPAG6,THNSL1"
TCGA.AG.A01W.01A	10	18282181	18868199	31	0.1318	NEUTRAL	NA	3	"CACNB2,NSUN6,SLC39A12"
TCGA.AA.3862.01A	10	18289548	32561885	646	-0.2274	NEUTRAL	NA	57	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP12,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BMI1,C10orf113,C10orf126,C10orf67,CACNB2,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,EPC1,GAD2,GPR158,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MASTL,MKX,MLLT10,MPP7,MSRB2,MTPAP,MYO3A,NEBL,NSUN6,OTUD1,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,SKIDA1,SLC39A12,SPAG6,SVIL,THNSL1,WAC,YME1L1,ZEB1,ZNF438"
TCGA.AA.3811	10	18392979	25615331	2609	0.0806	NEUTRAL	NA	28	"ARHGAP21,ARL5B,ARMC3,BMI1,C10orf113,C10orf67,CACNB2,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,GPR158,KIAA1217,MALRD1,MLLT10,MSRB2,NEBL,NSUN6,OTUD1,PIP4K2A,PLXDC2,PRTFDC1,PTF1A,SKIDA1,SPAG6,THNSL1"
TCGA.AA.3844	10	18395164	18490600	51	-0.0408	NEUTRAL	NA	1	CACNB2
TCGA.AG.3583	10	18397246	46943376	8151	0.01	NEUTRAL	NA	95	"ABI1,ACBD5,AGAP4,ALOX5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BMI1,BMS1,C10orf10,C10orf113,C10orf126,C10orf142,C10orf25,C10orf67,CACNB2,CASC10,CCDC7,CCNY,COMMD3,COMMD3-BMI1,CREM,CSGALNACT2,CUL2,CXCL12,DNAJC1,EBLN1,ENKUR,EPC1,FAM21C,FXYD4,FZD8,GAD2,GJD4,GPR158,HNRNPF,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MARCH8,MASTL,MKX,MLLT10,MPP7,MSRB2,MTPAP,MTRNR2L7,MYO3A,NEBL,NRP1,NSUN6,OR13A1,OTUD1,PARD3,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,PTPN20,RAB18,RASGEF1A,RASSF4,RET,SKIDA1,SPAG6,SVIL,THNSL1,TMEM72,WAC,YME1L1,ZEB1,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485"
TCGA.AA.3844	10	18493386	26969380	3105	-0.1653	NEUTRAL	NA	31	"APBB1IP,ARHGAP21,ARL5B,ARMC3,BMI1,C10orf113,C10orf67,CACNB2,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,GAD2,GPR158,KIAA1217,MALRD1,MLLT10,MSRB2,MYO3A,NEBL,NSUN6,OTUD1,PIP4K2A,PLXDC2,PRTFDC1,PTF1A,SKIDA1,SPAG6,THNSL1"
TCGA.A6.A567	10	18673099	19668099	432	0.369	NEUTRAL	NA	4	"ARL5B,CACNB2,MALRD1,NSUN6"
TCGA.EI.6508	10	18810673	34037556	5632	0.0113	NEUTRAL	NA	59	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP12,ARHGAP21,ARL5B,ARMC3,ARMC4,BAMBI,BMI1,C10orf113,C10orf126,C10orf67,CACNB2,CASC10,CCDC7,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,EPC1,GAD2,GPR158,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MASTL,MKX,MLLT10,MPP7,MSRB2,MTPAP,MYO3A,NEBL,NRP1,NSUN6,OTUD1,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,SKIDA1,SPAG6,SVIL,THNSL1,WAC,YME1L1,ZEB1,ZNF438"
TCGA.AG.A01W.01A	10	18925102	22257944	97	0.1406	NEUTRAL	NA	10	"ARL5B,C10orf113,CASC10,DNAJC1,MALRD1,MLLT10,NEBL,NSUN6,PLXDC2,SKIDA1"
TCGA.D5.6532	10	18990314	82660015	19557	0.0015	NEUTRAL	NA	277	Too-Many
TCGA.AA.3850	10	19053002	26417530	2627	-0.13865	NEUTRAL	NA	26	"ARHGAP21,ARMC3,BMI1,C10orf113,C10orf67,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,GPR158,KIAA1217,MALRD1,MLLT10,MSRB2,MYO3A,NEBL,OTUD1,PIP4K2A,PLXDC2,PRTFDC1,PTF1A,SKIDA1,SPAG6,THNSL1"
TCGA.AA.3941	10	19070687	24127886	1770	-0.027	NEUTRAL	NA	20	"ARMC3,BMI1,C10orf113,C10orf67,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,KIAA1217,MALRD1,MLLT10,MSRB2,NEBL,OTUD1,PIP4K2A,PLXDC2,PTF1A,SKIDA1,SPAG6"
TCGA.CK.5914.01A	10	19492623	21435233	67	0.364	NEUTRAL	NA	4	"C10orf113,MALRD1,NEBL,PLXDC2"
TCGA.A6.3807	10	19509368	24933955	1913	-0.3999	NEUTRAL	NA	21	"ARHGAP21,ARMC3,BMI1,C10orf113,C10orf67,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,KIAA1217,MALRD1,MLLT10,MSRB2,NEBL,OTUD1,PIP4K2A,PLXDC2,PTF1A,SKIDA1,SPAG6"
TCGA.AA.3872	10	19548001	19601053	20	-0.249	NEUTRAL	NA	1	MALRD1
TCGA.CM.5862	10	19912561	38938660	6484	0.286	NEUTRAL	NA	68	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARMC3,ARMC4,BAMBI,BMI1,C10orf113,C10orf126,C10orf67,CASC10,CCDC7,CCNY,COMMD3,COMMD3-BMI1,CREM,CUL2,DNAJC1,EBLN1,ENKUR,EPC1,FZD8,GAD2,GJD4,GPR158,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MASTL,MKX,MLLT10,MPP7,MSRB2,MTPAP,MTRNR2L7,MYO3A,NEBL,NRP1,OTUD1,PARD3,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,SKIDA1,SPAG6,SVIL,THNSL1,WAC,YME1L1,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF37A,ZNF438"
TCGA.AG.3909.01A	10	20105982	21435233	45	0.1885	NEUTRAL	NA	3	"C10orf113,NEBL,PLXDC2"
TCGA.AA.A00D.01A	10	20357032	21169676	35	-0.406	NEUTRAL	NA	2	"NEBL,PLXDC2"
TCGA.F4.6460	10	20639840	21136443	261	-0.3649	NEUTRAL	NA	1	NEBL
TCGA.F4.6460	10	21137745	66856639	13393	0	NEUTRAL	NA	162	Too-Many
TCGA.AA.A00D.01A	10	21176989	27411743	262	-0.0091	NEUTRAL	NA	30	"ABI1,ANKRD26,APBB1IP,ARHGAP21,ARMC3,BMI1,C10orf113,C10orf67,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,GAD2,GPR158,KIAA1217,MLLT10,MSRB2,MYO3A,NEBL,OTUD1,PDSS1,PIP4K2A,PRTFDC1,PTF1A,SKIDA1,SPAG6,THNSL1,YME1L1"
TCGA.AG.3909.01A	10	21461263	22608818	44	-0.1939	NEUTRAL	NA	8	"CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,MLLT10,NEBL,SKIDA1"
TCGA.EI.6513	10	21515050	87163988	20176	-0.0021	NEUTRAL	NA	281	Too-Many
TCGA.A6.3808.01A	10	21785429	27425158	311	0.2342	NEUTRAL	NA	28	"ABI1,ANKRD26,APBB1IP,ARHGAP21,ARMC3,BMI1,C10orf67,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,GAD2,GPR158,KIAA1217,MLLT10,MSRB2,MYO3A,OTUD1,PDSS1,PIP4K2A,PRTFDC1,PTF1A,SKIDA1,SPAG6,THNSL1,YME1L1"
TCGA.AG.3906.01A	10	21845564	22217937	33	-0.2081	NEUTRAL	NA	2	"DNAJC1,MLLT10"
TCGA.AG.4009.01A	10	21845564	22217937	33	-0.1407	NEUTRAL	NA	2	"DNAJC1,MLLT10"
TCGA.CK.5914.01A	10	21845564	22605298	35	0.109	NEUTRAL	NA	3	"DNAJC1,EBLN1,MLLT10"
TCGA.AA.A010.01A	10	21875214	22292125	33	0.2433	NEUTRAL	NA	2	"DNAJC1,MLLT10"
TCGA.AA.A00N.01A	10	21875214	22605298	34	0.3234	NEUTRAL	NA	3	"DNAJC1,EBLN1,MLLT10"
TCGA.D5.6922	10	21914684	33173850	3980	0.0185	NEUTRAL	NA	48	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP12,ARHGAP21,ARMC3,ARMC4,BAMBI,BMI1,C10orf126,C10orf67,CCDC7,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,EPC1,GAD2,GPR158,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MLLT10,MPP7,MSRB2,MTPAP,MYO3A,OTUD1,PDSS1,PIP4K2A,PRTFDC1,PTCHD3,PTF1A,RAB18,SPAG6,SVIL,THNSL1,WAC,YME1L1,ZEB1,ZNF438"
TCGA.A6.A567	10	22147331	23734737	428	0.3106	NEUTRAL	NA	12	"ARMC3,BMI1,C10orf67,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,MSRB2,OTUD1,PIP4K2A,PTF1A,SPAG6"
TCGA.AG.3891.01A	10	22606766	22617921	8	0.3591	NEUTRAL	NA	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.A6.3810.01A	10	22606766	22618232	9	-0.3854	NEUTRAL	NA	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AA.A00F.01A	10	22606766	22618232	9	0.2543	NEUTRAL	NA	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AG.A008.01A	10	22607516	22634463	9	0.1759	NEUTRAL	NA	4	"BMI1,COMMD3,COMMD3-BMI1,SPAG6"
TCGA.AF.3914.01A	10	22617921	59958950	1175	0.3434	NEUTRAL	NA	132	Too-Many
TCGA.AG.3891.01A	10	22618232	24922281	90	-0.1146	NEUTRAL	NA	11	"ARHGAP21,ARMC3,BMI1,C10orf67,COMMD3-BMI1,KIAA1217,MSRB2,OTUD1,PIP4K2A,PTF1A,SPAG6"
TCGA.AA.A01K.01A	10	22634463	23290801	29	0.2269	NEUTRAL	NA	3	"ARMC3,PIP4K2A,SPAG6"
TCGA.AA.A01Q.01A	10	22634463	23326177	37	0.1104	NEUTRAL	NA	3	"ARMC3,PIP4K2A,SPAG6"
TCGA.AA.A00N.01A	10	22634463	23729035	60	0.028	NEUTRAL	NA	7	"ARMC3,C10orf67,MSRB2,OTUD1,PIP4K2A,PTF1A,SPAG6"
TCGA.AG.3906.01A	10	22634463	24923890	88	-0.0787	NEUTRAL	NA	9	"ARHGAP21,ARMC3,C10orf67,KIAA1217,MSRB2,OTUD1,PIP4K2A,PTF1A,SPAG6"
TCGA.AA.A00F.01A	10	22634463	26506467	147	-0.3425	NEUTRAL	NA	15	"ARHGAP21,ARMC3,C10orf67,ENKUR,GAD2,GPR158,KIAA1217,MSRB2,MYO3A,OTUD1,PIP4K2A,PRTFDC1,PTF1A,SPAG6,THNSL1"
TCGA.AG.3909.01A	10	22634463	27366265	230	-0.012	NEUTRAL	NA	19	"ABI1,ANKRD26,APBB1IP,ARHGAP21,ARMC3,C10orf67,ENKUR,GAD2,GPR158,KIAA1217,MSRB2,MYO3A,OTUD1,PDSS1,PIP4K2A,PRTFDC1,PTF1A,SPAG6,THNSL1"
TCGA.CK.5914.01A	10	22634463	27425158	264	0.0463	NEUTRAL	NA	20	"ABI1,ANKRD26,APBB1IP,ARHGAP21,ARMC3,C10orf67,ENKUR,GAD2,GPR158,KIAA1217,MSRB2,MYO3A,OTUD1,PDSS1,PIP4K2A,PRTFDC1,PTF1A,SPAG6,THNSL1,YME1L1"
TCGA.A6.3810.01A	10	22634463	46282436	877	0.1008	NEUTRAL	NA	78	"ABI1,ACBD5,ALOX5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARMC3,ARMC4,BAMBI,BMS1,C10orf10,C10orf126,C10orf142,C10orf25,C10orf67,CCDC7,CCNY,CREM,CSGALNACT2,CUL2,CXCL12,ENKUR,EPC1,FAM21C,FXYD4,FZD8,GAD2,GJD4,GPR158,HNRNPF,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MARCH8,MASTL,MKX,MPP7,MSRB2,MTPAP,MTRNR2L7,MYO3A,NRP1,OR13A1,OTUD1,PARD3,PDSS1,PIP4K2A,PRTFDC1,PTCHD3,PTF1A,RAB18,RASGEF1A,RASSF4,RET,SPAG6,SVIL,THNSL1,TMEM72,WAC,YME1L1,ZEB1,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485"
TCGA.AG.4009.01A	10	22653755	45430104	745	-0.1621	NEUTRAL	NA	69	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARMC3,ARMC4,BAMBI,BMS1,C10orf126,C10orf142,C10orf67,CCDC7,CCNY,CREM,CSGALNACT2,CUL2,CXCL12,ENKUR,EPC1,FXYD4,FZD8,GAD2,GJD4,GPR158,HNRNPF,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MSRB2,MTPAP,MTRNR2L7,MYO3A,NRP1,OTUD1,PARD3,PDSS1,PIP4K2A,PRTFDC1,PTCHD3,PTF1A,RAB18,RASGEF1A,RET,SPAG6,SVIL,THNSL1,TMEM72,WAC,YME1L1,ZEB1,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485"
TCGA.AG.A008.01A	10	22653755	125780735	5442	-0.2175	NEUTRAL	NA	562	Too-Many
TCGA.AA.A010.01A	10	22690043	23409635	35	0.2415	NEUTRAL	NA	4	"ARMC3,MSRB2,PIP4K2A,SPAG6"
TCGA.AA.A02E.01A	10	22699923	22880521	9	-0.1938	NEUTRAL	NA	2	"PIP4K2A,SPAG6"
TCGA.AG.A01W.01A	10	22730050	28531038	330	0.0447	NEUTRAL	NA	26	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP21,ARMC3,ARMC4,C10orf67,ENKUR,GAD2,GPR158,KIAA1217,MASTL,MKX,MPP7,MSRB2,MYO3A,OTUD1,PDSS1,PIP4K2A,PRTFDC1,PTCHD3,PTF1A,RAB18,THNSL1,YME1L1"
TCGA.AA.A02E.01A	10	22896776	23295766	15	0.3745	NEUTRAL	NA	2	"ARMC3,PIP4K2A"
TCGA.AA.A01T	10	23151063	23478614	112	0.047	NEUTRAL	NA	2	"ARMC3,MSRB2"
TCGA.AA.A01K.01A	10	23319546	24802140	23	-0.0603	NEUTRAL	NA	6	"ARMC3,C10orf67,KIAA1217,MSRB2,OTUD1,PTF1A"
TCGA.AA.A02E.01A	10	23319546	128776131	5410	0.0389	NEUTRAL	NA	578	Too-Many
TCGA.A6.6653	10	23664095	100021982	23635	-0.0559	NEUTRAL	NA	379	Too-Many
TCGA.A6.A567	10	23743461	24023197	106	0.0077	NEUTRAL	NA	1	KIAA1217
TCGA.AG.A01Y	10	23966971	135434550	36558	-0.026	NEUTRAL	NA	610	Too-Many
TCGA.AA.3941	10	24172991	24303683	65	0.0977	NEUTRAL	NA	1	KIAA1217
TCGA.AA.3941	10	24317461	24459002	54	-0.0794	NEUTRAL	NA	1	KIAA1217
TCGA.AA.3941	10	24462633	25247472	277	0.3774	NEUTRAL	NA	3	"ARHGAP21,KIAA1217,PRTFDC1"
TCGA.AA.A01Q.01A	10	24498056	26506467	107	0.1394	NEUTRAL	NA	8	"ARHGAP21,ENKUR,GAD2,GPR158,KIAA1217,MYO3A,PRTFDC1,THNSL1"
TCGA.AA.A00J.01A	10	24727260	99349624	3015	-0.001	NEUTRAL	NA	368	Too-Many
TCGA.AA.A01K.01A	10	24813234	27447441	194	0.224	NEUTRAL	NA	14	"ABI1,ANKRD26,APBB1IP,ARHGAP21,ENKUR,GAD2,GPR158,KIAA1217,MASTL,MYO3A,PDSS1,PRTFDC1,THNSL1,YME1L1"
TCGA.AG.A020	10	24882760	29018934	1444	0.0513	NEUTRAL	NA	21	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP21,ARMC4,BAMBI,ENKUR,GAD2,GPR158,MASTL,MKX,MPP7,MYO3A,PDSS1,PRTFDC1,PTCHD3,RAB18,THNSL1,WAC,YME1L1"
TCGA.CA.5254	10	24889900	30100555	2002	-0.1513	NEUTRAL	NA	24	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP21,ARMC4,BAMBI,C10orf126,ENKUR,GAD2,GPR158,LYZL1,MASTL,MKX,MPP7,MYO3A,PDSS1,PRTFDC1,PTCHD3,RAB18,SVIL,THNSL1,WAC,YME1L1"
TCGA.AG.A032.01A	10	24890855	99133310	3252	-0.0843	NEUTRAL	NA	359	Too-Many
TCGA.AA.A00N.01A	10	24908360	25509964	28	-0.331	NEUTRAL	NA	5	"ARHGAP21,ENKUR,GPR158,PRTFDC1,THNSL1"
TCGA.AG.3891.01A	10	24923890	25147240	9	0.249	NEUTRAL	NA	2	"ARHGAP21,PRTFDC1"
TCGA.A6.3807	10	24939664	27868458	1010	0.002	NEUTRAL	NA	16	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP21,ENKUR,GAD2,GPR158,MASTL,MYO3A,PDSS1,PRTFDC1,PTCHD3,RAB18,THNSL1,YME1L1"
TCGA.AA.A010.01A	10	25138695	26830464	85	0.0631	NEUTRAL	NA	7	"APBB1IP,ENKUR,GAD2,GPR158,MYO3A,PRTFDC1,THNSL1"
TCGA.AG.3906.01A	10	25138695	50916380	889	-0.048	NEUTRAL	NA	101	Too-Many
TCGA.AG.3891.01A	10	25160859	50916380	874	-0.0863	NEUTRAL	NA	101	Too-Many
TCGA.AA.3941	10	25257138	25520470	82	0.0983	NEUTRAL	NA	3	"ENKUR,GPR158,THNSL1"
TCGA.AA.3811	10	25675123	52523594	6937	0.1556	NEUTRAL	NA	109	Too-Many
TCGA.AA.A02K.01A	10	25684790	26377131	21	-0.0279	NEUTRAL	NA	2	"GPR158,MYO3A"
TCGA.AA.3941	10	25722443	25771250	21	0.3042	NEUTRAL	NA	1	GPR158
TCGA.AA.A01T	10	25778321	54409487	7669	0.0355	NEUTRAL	NA	113	Too-Many
TCGA.AA.3941	10	25781406	26308083	222	0.0637	NEUTRAL	NA	2	"GPR158,MYO3A"
TCGA.D5.5538	10	26064076	65284602	11333	-0.0004	NEUTRAL	NA	139	Too-Many
TCGA.AA.3979	10	26147059	116124776	27950	0.0036	NEUTRAL	NA	489	Too-Many
TCGA.AA.3941	10	26313336	26400159	26	-0.1472	NEUTRAL	NA	1	MYO3A
TCGA.AA.3941	10	26401590	31686760	2151	0.3137	NEUTRAL	NA	25	"ABI1,ACBD5,ANKRD26,APBB1IP,ARMC4,BAMBI,C10orf126,GAD2,KIAA1462,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MTPAP,MYO3A,PDSS1,PTCHD3,RAB18,SVIL,WAC,YME1L1,ZEB1,ZNF438"
TCGA.AA.3850	10	26418904	27799308	470	0.20155	NEUTRAL	NA	11	"ABI1,ACBD5,ANKRD26,APBB1IP,GAD2,MASTL,MYO3A,PDSS1,PTCHD3,RAB18,YME1L1"
TCGA.AA.A00F.01A	10	26507933	26518544	4	0.1148	NEUTRAL	NA	1	GAD2
TCGA.AA.3666	10	26533764	55859462	7976	0.3664	NEUTRAL	NA	113	Too-Many
TCGA.AA.A00F.01A	10	26534833	26830464	18	-0.3906	NEUTRAL	NA	2	"APBB1IP,GAD2"
TCGA.AA.A01Q.01A	10	26534833	43318613	464	0.1492	NEUTRAL	NA	44	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARMC4,BAMBI,BMS1,C10orf126,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GAD2,GJD4,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MTPAP,MTRNR2L7,NRP1,PARD3,PDSS1,PTCHD3,RAB18,SVIL,WAC,YME1L1,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A,ZNF438"
TCGA.QL.A97D	10	26697293	32280290	2188	0.1623	NEUTRAL	NA	24	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP12,ARMC4,BAMBI,C10orf126,KIAA1462,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MTPAP,PDSS1,PTCHD3,RAB18,SVIL,WAC,YME1L1,ZEB1,ZNF438"
TCGA.AH.6897	10	26739564	32176409	2150	-0.4593	NEUTRAL	NA	24	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP12,ARMC4,BAMBI,C10orf126,KIAA1462,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MTPAP,PDSS1,PTCHD3,RAB18,SVIL,WAC,YME1L1,ZEB1,ZNF438"
TCGA.AA.A00N.01A	10	26822321	26830464	3	0.0616	NEUTRAL	NA	1	APBB1IP
TCGA.AA.A00F.01A	10	26848982	27009110	8	0.0074	NEUTRAL	NA	2	"APBB1IP,PDSS1"
TCGA.AA.3844	10	26978857	27814552	251	0.0059	NEUTRAL	NA	8	"ABI1,ACBD5,ANKRD26,MASTL,PDSS1,PTCHD3,RAB18,YME1L1"
TCGA.AA.3989	10	26978857	45218840	4909	-0.1733	NEUTRAL	NA	52	"ABI1,ACBD5,ANKRD26,ANKRD30A,ARHGAP12,ARMC4,BAMBI,BMS1,C10orf126,C10orf142,CCDC7,CCNY,CREM,CSGALNACT2,CUL2,CXCL12,EPC1,FXYD4,FZD8,GJD4,HNRNPF,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MTPAP,MTRNR2L7,NRP1,PARD3,PDSS1,PTCHD3,RAB18,RASGEF1A,RET,SVIL,WAC,YME1L1,ZEB1,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485"
TCGA.AA.A010.01A	10	26991008	27313339	30	-0.2828	NEUTRAL	NA	3	"ABI1,ANKRD26,PDSS1"
TCGA.AA.A00F.01A	10	27012708	30638041	179	-0.2704	NEUTRAL	NA	18	"ABI1,ACBD5,ANKRD26,ARMC4,BAMBI,C10orf126,KIAA1462,LYZL1,MASTL,MKX,MPP7,MTPAP,PDSS1,PTCHD3,RAB18,SVIL,WAC,YME1L1"
TCGA.AA.A010.01A	10	27317741	27404924	29	0.3375	NEUTRAL	NA	2	"ANKRD26,YME1L1"
TCGA.AZ.4684.01A	10	27349214	27523974	56	-0.4876	NEUTRAL	NA	4	"ACBD5,ANKRD26,MASTL,YME1L1"
TCGA.AG.A00C.01A	10	27367954	27458846	33	0.2882	NEUTRAL	NA	3	"ANKRD26,MASTL,YME1L1"
TCGA.AA.A010.01A	10	27406473	27423741	10	-0.4374	NEUTRAL	NA	1	YME1L1
TCGA.AG.3909.01A	10	27410245	27425158	8	-0.2307	NEUTRAL	NA	1	YME1L1
TCGA.AA.A010.01A	10	27448500	27470360	9	-0.1526	NEUTRAL	NA	1	MASTL
TCGA.AA.A01K.01A	10	27455991	29756635	93	0.1322	NEUTRAL	NA	12	"ACBD5,ARMC4,BAMBI,C10orf126,LYZL1,MASTL,MKX,MPP7,PTCHD3,RAB18,SVIL,WAC"
TCGA.AG.3909.01A	10	27462020	27508602	12	0.1216	NEUTRAL	NA	2	"ACBD5,MASTL"
TCGA.AG.A00C.01A	10	27462020	27508602	12	-0.0852	NEUTRAL	NA	2	"ACBD5,MASTL"
TCGA.CK.5914.01A	10	27462020	32304410	188	0.0879	NEUTRAL	NA	20	"ACBD5,ARHGAP12,ARMC4,BAMBI,C10orf126,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MTPAP,PTCHD3,RAB18,SVIL,WAC,ZEB1,ZNF438"
TCGA.AA.A00N.01A	10	27469831	27506877	10	0.1713	NEUTRAL	NA	2	"ACBD5,MASTL"
TCGA.AA.A00D.01A	10	27469831	28024118	29	0.0554	NEUTRAL	NA	5	"ACBD5,MASTL,MKX,PTCHD3,RAB18"
TCGA.AA.A010.01A	10	27475271	27499696	6	0.3343	NEUTRAL	NA	2	"ACBD5,MASTL"
TCGA.AZ.4684.01A	10	27529231	28276264	39	0.249	NEUTRAL	NA	5	"ACBD5,ARMC4,MKX,PTCHD3,RAB18"
TCGA.AA.A01I.01A	10	27529231	43597801	419	-0.0842	NEUTRAL	NA	38	"ACBD5,ANKRD30A,ARHGAP12,ARMC4,BAMBI,BMS1,C10orf126,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GJD4,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MKX,MPP7,MTPAP,MTRNR2L7,NRP1,PARD3,PTCHD3,RAB18,RET,SVIL,WAC,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A,ZNF438"
TCGA.A6.A567	10	27691090	32548482	1967	-0.1223	NEUTRAL	NA	18	"ARHGAP12,ARMC4,BAMBI,C10orf126,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MKX,MPP7,MTPAP,PTCHD3,RAB18,SVIL,WAC,ZEB1,ZNF438"
TCGA.AG.A00C.01A	10	27692091	28250449	25	-0.1311	NEUTRAL	NA	4	"ARMC4,MKX,PTCHD3,RAB18"
TCGA.A6.3808.01A	10	27702059	36811751	346	0.1991	NEUTRAL	NA	28	"ARHGAP12,ARMC4,BAMBI,C10orf126,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GJD4,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MKX,MPP7,MTPAP,NRP1,PARD3,PTCHD3,RAB18,SVIL,WAC,ZEB1,ZNF438"
TCGA.AG.A016.01A	10	27798755	28030223	9	0.1462	NEUTRAL	NA	2	"MKX,RAB18"
TCGA.AA.A010.01A	10	27798755	28527429	47	-0.0191	NEUTRAL	NA	4	"ARMC4,MKX,MPP7,RAB18"
TCGA.AA.3850	10	27822815	28290692	174	0.11315	NEUTRAL	NA	3	"ARMC4,MKX,RAB18"
TCGA.AA.3844	10	27822815	31457278	1621	0.0232	NEUTRAL	NA	14	"ARMC4,BAMBI,C10orf126,KIAA1462,LYZL1,LYZL2,MAP3K8,MKX,MPP7,MTPAP,RAB18,SVIL,WAC,ZNF438"
TCGA.AA.3860	10	27851553	86717208	17992	0.0146	NEUTRAL	NA	249	Too-Many
TCGA.A6.3807	10	27869386	29787437	816	-0.3484	NEUTRAL	NA	8	"ARMC4,BAMBI,C10orf126,LYZL1,MKX,MPP7,SVIL,WAC"
TCGA.AA.A00D.01A	10	28030223	28436365	34	-0.3741	NEUTRAL	NA	3	"ARMC4,MKX,MPP7"
TCGA.AG.3909.01A	10	28032110	32197061	146	0.0251	NEUTRAL	NA	15	"ARHGAP12,ARMC4,BAMBI,C10orf126,KIAA1462,LYZL1,LYZL2,MAP3K8,MKX,MPP7,MTPAP,SVIL,WAC,ZEB1,ZNF438"
TCGA.AZ.4684.01A	10	28283841	31610360	109	-0.2244	NEUTRAL	NA	13	"ARMC4,BAMBI,C10orf126,KIAA1462,LYZL1,LYZL2,MAP3K8,MPP7,MTPAP,SVIL,WAC,ZEB1,ZNF438"
TCGA.AA.3850	10	28341811	28509295	73	0.15855	NEUTRAL	NA	1	MPP7
TCGA.AG.A00C.01A	10	28342953	30638041	85	-0.1682	NEUTRAL	NA	8	"BAMBI,C10orf126,KIAA1462,LYZL1,MPP7,MTPAP,SVIL,WAC"
TCGA.AA.A00D.01A	10	28438853	32635639	144	-0.0963	NEUTRAL	NA	15	"ARHGAP12,BAMBI,C10orf126,EPC1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MPP7,MTPAP,SVIL,WAC,ZEB1,ZNF438"
TCGA.AA.3850	10	28513244	31158705	1247	0.30635	NEUTRAL	NA	11	"BAMBI,C10orf126,KIAA1462,LYZL1,LYZL2,MAP3K8,MPP7,MTPAP,SVIL,WAC,ZNF438"
TCGA.AA.A010.01A	10	28872320	29169066	17	-0.1685	NEUTRAL	NA	3	"BAMBI,C10orf126,WAC"
TCGA.AG.A01W.01A	10	28904509	28948431	12	0.2499	NEUTRAL	NA	1	WAC
TCGA.AG.A01W.01A	10	28952289	30644839	58	-0.1675	NEUTRAL	NA	6	"BAMBI,C10orf126,KIAA1462,LYZL1,MTPAP,SVIL"
TCGA.AG.A020	10	29025677	37813589	3157	-0.3171	NEUTRAL	NA	22	"ANKRD30A,ARHGAP12,C10orf126,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GJD4,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MTPAP,NRP1,PARD3,SVIL,ZEB1,ZNF438"
TCGA.AM.5820	10	29516515	43225727	3185	-0.0645	NEUTRAL	NA	27	"ANKRD30A,ARHGAP12,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GJD4,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MTPAP,MTRNR2L7,NRP1,PARD3,SVIL,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A,ZNF438"
TCGA.BM.6198	10	29671265	64956441	9890	0.07165	NEUTRAL	NA	120	Too-Many
TCGA.AA.A01K.01A	10	29776055	99216484	2979	0.069	NEUTRAL	NA	339	Too-Many
TCGA.AA.A010.01A	10	29788022	30901699	39	0.3639	NEUTRAL	NA	5	"KIAA1462,LYZL2,MAP3K8,MTPAP,SVIL"
TCGA.A6.3807	10	29798101	45070136	3743	-0.0029	NEUTRAL	NA	37	"ANKRD30A,ARHGAP12,BMS1,C10orf142,CCDC7,CCNY,CREM,CSGALNACT2,CUL2,CXCL12,EPC1,FXYD4,FZD8,GJD4,HNRNPF,ITGB1,KIAA1462,KIF5B,LYZL2,MAP3K8,MTPAP,MTRNR2L7,NRP1,PARD3,RASGEF1A,RET,SVIL,ZEB1,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485"
TCGA.AA.A01Z	10	29884646	135434550	34318	0	NEUTRAL	NA	586	Too-Many
TCGA.AA.3556	10	30094197	84840548	16213	0.0099	NEUTRAL	NA	234	Too-Many
TCGA.CA.5254	10	30108559	32723830	990	-0.1716	NEUTRAL	NA	9	"ARHGAP12,EPC1,KIAA1462,KIF5B,LYZL2,MAP3K8,MTPAP,ZEB1,ZNF438"
TCGA.G4.6317	10	30110514	67611853	10492	0.0397	NEUTRAL	NA	120	Too-Many
TCGA.A6.2685	10	30150822	135434550	34147	0.0051	NEUTRAL	NA	585	Too-Many
TCGA.AG.A01W.01A	10	30651300	32364786	66	0.2665	NEUTRAL	NA	6	"ARHGAP12,KIF5B,LYZL2,MAP3K8,ZEB1,ZNF438"
TCGA.AA.A00F.01A	10	30727876	30740520	4	0.127	NEUTRAL	NA	1	MAP3K8
TCGA.AG.A01L.01A	10	30740520	50916380	574	-0.0932	NEUTRAL	NA	76	"AGAP4,AGAP9,ALOX5,ANKRD30A,ANTXRL,ANXA8,ANXA8L1,ARHGAP12,ARHGAP22,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CCDC7,CCNY,CH17-360D5.1,CHAT,CREM,CSGALNACT2,CUL2,CXCL12,DRGX,EPC1,ERCC6,ERCC6-PGBD3,FAM170B,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,FZD8,GDF10,GDF2,GJD4,GPRIN2,HNRNPF,ITGB1,KIF5B,LRRC18,LYZL2,MAP3K8,MAPK8,MARCH8,MTRNR2L7,NPY4R,NRP1,OR13A1,PARD3,PGBD3,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SLC18A3,SYT15,TMEM72,VSTM4,WDFY4,ZEB1,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485,ZNF488"
TCGA.AG.A00C.01A	10	30746984	32635639	70	-0.1208	NEUTRAL	NA	7	"ARHGAP12,EPC1,KIF5B,LYZL2,MAP3K8,ZEB1,ZNF438"
TCGA.AA.A00F.01A	10	30746984	51978232	503	-0.2144	NEUTRAL	NA	85	"AGAP4,AGAP6,AGAP9,ALOX5,ANKRD30A,ANTXRL,ANXA8,ANXA8L1,ARHGAP12,ARHGAP22,ASAH2,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CCDC7,CCNY,CH17-360D5.1,CHAT,CREM,CSGALNACT2,CUL2,CXCL12,DRGX,EPC1,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,FZD8,GDF10,GDF2,GJD4,GPRIN2,HNRNPF,ITGB1,KIF5B,LRRC18,LYZL2,MAP3K8,MAPK8,MARCH8,MSMB,MTRNR2L7,NCOA4,NPY4R,NRP1,OGDHL,OR13A1,PARD3,PARG,PGBD3,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZEB1,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485,ZNF488"
TCGA.D5.6536	10	30871627	50773263	4460	-0.024	NEUTRAL	NA	72	"AGAP4,AGAP9,ALOX5,ANKRD30A,ANTXRL,ANXA8,ANXA8L1,ARHGAP12,ARHGAP22,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf71,CCDC7,CCNY,CH17-360D5.1,CREM,CSGALNACT2,CUL2,CXCL12,DRGX,EPC1,ERCC6,ERCC6-PGBD3,FAM170B,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,FZD8,GDF10,GDF2,GJD4,GPRIN2,HNRNPF,ITGB1,KIF5B,LRRC18,LYZL2,MAPK8,MARCH8,MTRNR2L7,NPY4R,NRP1,OR13A1,PARD3,PGBD3,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SYT15,TMEM72,VSTM4,WDFY4,ZEB1,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF438,ZNF485,ZNF488"
TCGA.AA.A010.01A	10	31146511	38407267	258	0.1456	NEUTRAL	NA	20	"ANKRD30A,ARHGAP12,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GJD4,ITGB1,KIF5B,MTRNR2L7,NRP1,PARD3,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF37A,ZNF438"
TCGA.AA.3850	10	31159664	31548406	143	0.03795	NEUTRAL	NA	1	ZNF438
TCGA.AA.3844	10	31458150	31869084	85	-0.3977	NEUTRAL	NA	1	ZEB1
TCGA.AA.3977	10	31634712	31816595	35	-0.4309	NEUTRAL	NA	1	ZEB1
TCGA.AA.3692	10	31634712	33484828	530	0.0967	NEUTRAL	NA	7	"ARHGAP12,CCDC7,EPC1,ITGB1,KIF5B,NRP1,ZEB1"
TCGA.AA.3977	10	31831829	45218840	2949	0.0608	NEUTRAL	NA	30	"ANKRD30A,ARHGAP12,BMS1,C10orf142,CCDC7,CCNY,CREM,CSGALNACT2,CUL2,CXCL12,EPC1,FXYD4,FZD8,GJD4,HNRNPF,ITGB1,KIF5B,MTRNR2L7,NRP1,PARD3,RASGEF1A,RET,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485"
TCGA.AA.3850	10	31869084	32010053	53	0.14175	NEUTRAL	NA	0	None
TCGA.AA.3941	10	31869084	52491846	4448	0.2294	NEUTRAL	NA	82	"AGAP4,AGAP6,AGAP9,ALOX5,ANKRD30A,ANTXRL,ANXA8,ANXA8L1,ARHGAP12,ARHGAP22,ASAH2,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CCDC7,CCNY,CH17-360D5.1,CHAT,CREM,CSGALNACT2,CUL2,CXCL12,DRGX,EPC1,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,FZD8,GDF10,GDF2,GJD4,GPRIN2,HNRNPF,ITGB1,KIF5B,LRRC18,MAPK8,MARCH8,MSMB,MTRNR2L7,NCOA4,NPY4R,NRP1,OGDHL,OR13A1,PARD3,PARG,PGBD3,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485,ZNF488"
TCGA.AA.3844	10	31871705	32199369	111	-0.1252	NEUTRAL	NA	1	ARHGAP12
TCGA.AA.3850	10	32012381	32031787	18	-0.44475	NEUTRAL	NA	0	None
TCGA.AZ.4684.01A	10	32141388	32580050	31	-0.2655	NEUTRAL	NA	3	"ARHGAP12,EPC1,KIF5B"
TCGA.AA.A00N.01A	10	32197061	32807310	45	-0.2726	NEUTRAL	NA	4	"ARHGAP12,CCDC7,EPC1,KIF5B"
TCGA.AH.6897	10	32202932	32555310	119	-0.404	NEUTRAL	NA	2	"ARHGAP12,KIF5B"
TCGA.AA.3844	10	32202932	32675709	160	0.1843	NEUTRAL	NA	3	"ARHGAP12,EPC1,KIF5B"
TCGA.EI.6510	10	32290043	32500324	83	0.3396	NEUTRAL	NA	1	KIF5B
TCGA.AG.3909.01A	10	32304410	32337338	20	-0.4625	NEUTRAL	NA	1	KIF5B
TCGA.CK.5914.01A	10	32306023	32337338	19	-0.4555	NEUTRAL	NA	1	KIF5B
TCGA.AG.3909.01A	10	32344759	32594683	11	0.0382	NEUTRAL	NA	2	"EPC1,KIF5B"
TCGA.CK.5914.01A	10	32344759	32667324	13	-0.0554	NEUTRAL	NA	2	"EPC1,KIF5B"
TCGA.AG.A01W.01A	10	32366141	32634667	17	-0.229	NEUTRAL	NA	1	EPC1
TCGA.G4.6303	10	32368531	38677788	1930	0.2711	NEUTRAL	NA	16	"ANKRD30A,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GJD4,ITGB1,MTRNR2L7,NRP1,PARD3,ZNF248,ZNF25,ZNF33A,ZNF37A"
TCGA.QL.A97D	10	32369188	121058458	27355	0.151	NEUTRAL	NA	491	Too-Many
TCGA.G4.6295	10	32428235	32675329	96	0.3445	NEUTRAL	NA	1	EPC1
TCGA.EI.6510	10	32509646	135434550	33263	-0.0144	NEUTRAL	NA	577	Too-Many
TCGA.AA.3519	10	32531606	135434550	33307	-0.1294	NEUTRAL	NA	577	Too-Many
TCGA.AH.6897	10	32563921	75632759	12053	-0.0223	NEUTRAL	NA	191	Too-Many
TCGA.AZ.4684.01A	10	32581392	33113393	37	0.2914	NEUTRAL	NA	2	"CCDC7,EPC1"
TCGA.AG.A01W.01A	10	32675667	35936471	134	0.1496	NEUTRAL	NA	9	"CCDC7,CCNY,CREM,CUL2,FZD8,GJD4,ITGB1,NRP1,PARD3"
TCGA.G4.6295	10	32675709	46207800	2967	-0.0319	NEUTRAL	NA	36	"ALOX5,ANKRD30A,BMS1,C10orf10,C10orf142,C10orf25,CCDC7,CCNY,CREM,CSGALNACT2,CUL2,CXCL12,FXYD4,FZD8,GJD4,HNRNPF,ITGB1,MARCH8,MTRNR2L7,NRP1,OR13A1,PARD3,RASGEF1A,RASSF4,RET,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485"
TCGA.AA.3844	10	32676683	35000845	818	-0.1035	NEUTRAL	NA	4	"CCDC7,ITGB1,NRP1,PARD3"
TCGA.CA.5254	10	32726528	33291681	91	0.2752	NEUTRAL	NA	2	"CCDC7,ITGB1"
TCGA.CK.5914.01A	10	32751520	35300724	102	0.1804	NEUTRAL	NA	5	"CCDC7,CUL2,ITGB1,NRP1,PARD3"
TCGA.AG.A00C.01A	10	32806797	69990928	959	-0.0635	NEUTRAL	NA	118	Too-Many
TCGA.AG.3909.01A	10	32833111	34619993	68	0.0361	NEUTRAL	NA	4	"CCDC7,ITGB1,NRP1,PARD3"
TCGA.AA.A00D.01A	10	32854419	49319132	299	0.0243	NEUTRAL	NA	53	"AGAP4,AGAP9,ALOX5,ANKRD30A,ANTXRL,ANXA8,ANXA8L1,BMS1,C10orf10,C10orf142,C10orf25,CCDC7,CCNY,CH17-360D5.1,CREM,CSGALNACT2,CUL2,CXCL12,FAM21C,FAM25C,FAM25G,FXYD4,FZD8,GDF10,GDF2,GJD4,GPRIN2,HNRNPF,ITGB1,MARCH8,MTRNR2L7,NPY4R,NRP1,OR13A1,PARD3,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485,ZNF488"
TCGA.AZ.4616	10	32932206	110156432	23202	0.0123	NEUTRAL	NA	433	Too-Many
TCGA.AZ.4684.01A	10	33136705	37436245	119	-0.0091	NEUTRAL	NA	10	"ANKRD30A,CCDC7,CCNY,CREM,CUL2,FZD8,GJD4,ITGB1,NRP1,PARD3"
TCGA.AA.3850	10	33183013	34833632	689	0.05705	NEUTRAL	NA	3	"ITGB1,NRP1,PARD3"
TCGA.D5.6922	10	33183013	35123177	777	0.3003	NEUTRAL	NA	3	"ITGB1,NRP1,PARD3"
TCGA.AA.3861.01A	10	33212461	35351837	68	-0.4659	NEUTRAL	NA	4	"CUL2,ITGB1,NRP1,PARD3"
TCGA.AA.3862.01A	10	33221399	35351837	64	-0.4608	NEUTRAL	NA	4	"CUL2,ITGB1,NRP1,PARD3"
TCGA.CA.5254	10	33292324	37447444	1448	-0.1556	NEUTRAL	NA	8	"ANKRD30A,CCNY,CREM,CUL2,FZD8,GJD4,NRP1,PARD3"
TCGA.A6.A567	10	33470099	36758904	1150	0.3288	NEUTRAL	NA	7	"CCNY,CREM,CUL2,FZD8,GJD4,NRP1,PARD3"
TCGA.AA.3692	10	33580168	38968283	1543	0.0693	NEUTRAL	NA	13	"ANKRD30A,CCNY,CREM,CUL2,FZD8,GJD4,MTRNR2L7,NRP1,PARD3,ZNF248,ZNF25,ZNF33A,ZNF37A"
TCGA.EI.6508	10	34058567	46691158	2500	-0.0424	NEUTRAL	NA	36	"AGAP4,ALOX5,ANKRD30A,BMS1,C10orf10,C10orf142,C10orf25,CCNY,CREM,CSGALNACT2,CUL2,CXCL12,FAM21C,FXYD4,FZD8,GJD4,HNRNPF,MARCH8,MTRNR2L7,OR13A1,PARD3,PTPN20,RASGEF1A,RASSF4,RET,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485"
TCGA.DC.6683	10	34492774	135434550	32527	-0.3567	NEUTRAL	NA	573	Too-Many
TCGA.AG.3611.01A	10	34619993	34758962	16	-0.3701	NEUTRAL	NA	1	PARD3
TCGA.AA.A00N.01A	10	34661346	35857933	51	0.3042	NEUTRAL	NA	4	"CCNY,CREM,CUL2,PARD3"
TCGA.AG.3909.01A	10	34661346	35928236	52	-0.2571	NEUTRAL	NA	6	"CCNY,CREM,CUL2,FZD8,GJD4,PARD3"
TCGA.AG.3611.01A	10	34805888	38260591	56	0.1546	NEUTRAL	NA	10	"ANKRD30A,CCNY,CREM,CUL2,FZD8,GJD4,MTRNR2L7,PARD3,ZNF248,ZNF25"
TCGA.AA.3850	10	34834481	36246258	380	0.36745	NEUTRAL	NA	6	"CCNY,CREM,CUL2,FZD8,GJD4,PARD3"
TCGA.AA.3844	10	35006067	35798190	156	0.2342	NEUTRAL	NA	4	"CCNY,CREM,CUL2,PARD3"
TCGA.D5.6922	10	35123287	37322261	682	0.0018	NEUTRAL	NA	5	"CCNY,CREM,CUL2,FZD8,GJD4"
TCGA.CK.5914.01A	10	35302590	35500536	28	-0.4605	NEUTRAL	NA	2	"CREM,CUL2"
TCGA.AA.3862.01A	10	35360090	43315720	112	0.3432	NEUTRAL	NA	13	"ANKRD30A,BMS1,CCNY,CREM,CUL2,FZD8,GJD4,MTRNR2L7,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.CK.5914.01A	10	35625935	35841917	7	0.2325	NEUTRAL	NA	1	CCNY
TCGA.AA.3845	10	35699140	55664004	4528	0.0146	NEUTRAL	NA	80	"A1CF,AGAP4,AGAP6,AGAP9,ALOX5,ANKRD30A,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CCNY,CH17-360D5.1,CHAT,CSGALNACT2,CSTF2T,CXCL12,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,FZD8,GDF10,GDF2,GJD4,GPRIN2,HNRNPF,LRRC18,MAPK8,MARCH8,MBL2,MSMB,MTRNR2L7,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PCDH15,PGBD3,PRKG1,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485,ZNF488"
TCGA.AA.3844	10	35809443	42469893	841	-0.1508	NEUTRAL	NA	9	"ANKRD30A,CCNY,FZD8,GJD4,MTRNR2L7,ZNF248,ZNF25,ZNF33A,ZNF37A"
TCGA.AG.3890	10	36127327	114294891	23591	-0.0459	NEUTRAL	NA	440	Too-Many
TCGA.AA.3850	10	36253685	36787498	209	-0.13435	NEUTRAL	NA	0	None
TCGA.A6.A567	10	36759225	37508449	207	-0.0663	NEUTRAL	NA	1	ANKRD30A
TCGA.AA.3850	10	36787717	37081824	111	0.34615	NEUTRAL	NA	0	None
TCGA.AA.3850	10	37083714	37479883	90	-0.24855	NEUTRAL	NA	1	ANKRD30A
TCGA.D5.6535	10	37243241	37525895	52	-0.4013	NEUTRAL	NA	1	ANKRD30A
TCGA.AG.3909.01A	10	37425471	43615492	90	-0.3827	NEUTRAL	NA	9	"ANKRD30A,BMS1,MTRNR2L7,RET,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.CK.5914.01A	10	37430768	37466558	11	0.0129	NEUTRAL	NA	1	ANKRD30A
TCGA.AG.A016.01A	10	37430768	135440021	5165	-0.103	NEUTRAL	NA	568	Too-Many
TCGA.AA.A02K.01A	10	37433878	43088030	42	0.092	NEUTRAL	NA	7	"ANKRD30A,MTRNR2L7,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.AA.A00N.01A	10	37436245	37438533	2	0.0455	NEUTRAL	NA	1	ANKRD30A
TCGA.CA.5254	10	37454396	44068557	574	0.1951	NEUTRAL	NA	14	"ANKRD30A,BMS1,CSGALNACT2,FXYD4,HNRNPF,MTRNR2L7,RASGEF1A,RET,ZNF239,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.AG.A01W.01A	10	37470775	37521925	12	-0.2953	NEUTRAL	NA	1	ANKRD30A
TCGA.A6.3808.01A	10	37486152	46222680	185	-0.0641	NEUTRAL	NA	28	"ALOX5,ANKRD30A,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FAM21C,FXYD4,HNRNPF,MARCH8,MTRNR2L7,OR13A1,RASGEF1A,RASSF4,RET,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485"
TCGA.AA.A00L.01A	10	37507911	47087642	156	0.0353	NEUTRAL	NA	34	"AGAP4,ALOX5,ANKRD30A,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FXYD4,GPRIN2,HNRNPF,MARCH8,MTRNR2L7,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485"
TCGA.CK.4948.01B	10	37520292	47948697	245	-0.1029	NEUTRAL	NA	40	"AGAP4,AGAP9,ALOX5,ANKRD30A,ANTXRL,ANXA8,ANXA8L1,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FAM25C,FAM25G,FXYD4,GPRIN2,HNRNPF,MARCH8,MTRNR2L7,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485"
TCGA.AA.3850	10	37525621	37880349	74	-0.06775	NEUTRAL	NA	0	None
TCGA.A6.A567	10	37525621	39050889	244	0.2799	NEUTRAL	NA	5	"MTRNR2L7,ZNF248,ZNF25,ZNF33A,ZNF37A"
TCGA.AG.A01W.01A	10	37526158	38160538	9	0.2541	NEUTRAL	NA	2	"MTRNR2L7,ZNF248"
TCGA.AA.3850	10	37904472	38968283	165	0.19645	NEUTRAL	NA	4	"ZNF248,ZNF25,ZNF33A,ZNF37A"
TCGA.AA.3509.01A	10	38126516	38406970	19	0.1806	NEUTRAL	NA	4	"ZNF248,ZNF25,ZNF33A,ZNF37A"
TCGA.AZ.4684.01A	10	38126516	43127711	38	0.2474	NEUTRAL	NA	5	"ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.AA.A00N.01A	10	38126516	43221256	40	-0.1879	NEUTRAL	NA	5	"ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.CK.5914.01A	10	38145135	43318613	58	-0.0656	NEUTRAL	NA	6	"BMS1,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.F5.6811.01A	10	38160502	47225982	221	-0.0077	NEUTRAL	NA	35	"AGAP4,AGAP9,ALOX5,ANXA8,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FAM25C,FAM25G,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485"
TCGA.AG.A01W.01A	10	38161232	38286317	9	-0.5052	NEUTRAL	NA	1	ZNF25
TCGA.AA.3952	10	38237983	55877043	3852	-0.151	NEUTRAL	NA	74	"A1CF,AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CH17-360D5.1,CHAT,CSGALNACT2,CSTF2T,CXCL12,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,LRRC18,MAPK8,MARCH8,MBL2,MSMB,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PCDH15,PGBD3,PRKG1,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485,ZNF488"
TCGA.AG.A01W.01A	10	38300608	38446283	9	0.0789	NEUTRAL	NA	2	"ZNF33A,ZNF37A"
TCGA.AG.3611.01A	10	38343256	47087642	139	-0.0269	NEUTRAL	NA	30	"AGAP4,ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485"
TCGA.A6.2686	10	38679108	61437339	5624	-0.0512	NEUTRAL	NA	81	"A1CF,AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,BICC1,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CH17-360D5.1,CHAT,CISD1,CSGALNACT2,CSTF2T,CXCL12,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,IPMK,LRRC18,MAPK8,MARCH8,MBL2,MSMB,MTRNR2L5,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC16A9,SLC18A3,SYT15,TFAM,TIMM23,TIMM23B,TMEM72,UBE2D1,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485,ZNF488,ZWINT"
TCGA.G4.6303	10	38679108	135434550	31472	-0.0213	NEUTRAL	NA	561	Too-Many
TCGA.D5.6534	10	38968283	47085302	1159	-0.2128	NEUTRAL	NA	27	"AGAP4,ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FAM21C,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.A6.4107	10	39030135	135434550	31431	-0.1323	NEUTRAL	NA	561	Too-Many
TCGA.5M.AATE	10	39050889	79380641	11430	-0.2008	NEUTRAL	NA	189	Too-Many
TCGA.D5.6922	10	42433539	47099528	1158	0.1464	NEUTRAL	NA	28	"AGAP4,ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.AF.2692	10	42433539	47597030	1183	0.2115	NEUTRAL	NA	32	"AGAP4,AGAP9,ALOX5,ANXA8,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FAM25C,FAM25G,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.EI.7004	10	42433539	108521565	20755	0.0003	NEUTRAL	NA	418	Too-Many
TCGA.AA.3844	10	42502345	43419366	150	-0.0666	NEUTRAL	NA	2	"BMS1,ZNF33B"
TCGA.DM.A1D9	10	42523460	47077738	1153	-0.014	NEUTRAL	NA	26	"AGAP4,ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FAM21C,FXYD4,GPRIN2,HNRNPF,MARCH8,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.AA.3982	10	42523460	52394772	2354	-0.1276	NEUTRAL	NA	64	"AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CH17-360D5.1,CHAT,CSGALNACT2,CXCL12,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,LRRC18,MAPK8,MARCH8,MSMB,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PGBD3,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485,ZNF488"
TCGA.AA.3850	10	42636466	52451271	2358	0.18275	NEUTRAL	NA	64	"AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CH17-360D5.1,CHAT,CSGALNACT2,CXCL12,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,LRRC18,MAPK8,MARCH8,MSMB,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PGBD3,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485,ZNF488"
TCGA.G4.6314	10	42636466	57095665	4163	-0.3397	NEUTRAL	NA	71	"A1CF,AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CH17-360D5.1,CHAT,CSGALNACT2,CSTF2T,CXCL12,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,LRRC18,MAPK8,MARCH8,MBL2,MSMB,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PCDH15,PGBD3,PRKG1,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485,ZNF488"
TCGA.AY.4070	10	42636466	135434550	31288	-0.2089	NEUTRAL	NA	561	Too-Many
TCGA.DY.A1DF	10	42786972	46943376	1145	-0.0492	NEUTRAL	NA	24	"AGAP4,ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FAM21C,FXYD4,HNRNPF,MARCH8,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.AG.4015	10	42827990	73353568	9783	-0.4563	NEUTRAL	NA	142	Too-Many
TCGA.AA.3509.01A	10	42905484	42947005	9	-0.1834	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	10	42905484	43132286	16	0.3632	NEUTRAL	NA	1	ZNF33B
TCGA.AG.A01W.01A	10	43021337	50586366	320	0.3216	NEUTRAL	NA	48	"AGAP4,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf71,CH17-360D5.1,CSGALNACT2,CXCL12,DRGX,FAM170B,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,LRRC18,MAPK8,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SYT15,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485,ZNF488"
TCGA.AA.3509.01A	10	43127327	47948697	199	0.0231	NEUTRAL	NA	34	"AGAP4,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FAM25C,FAM25G,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.DM.A28M.01A	10	43127711	46143740	134	-0.1757	NEUTRAL	NA	21	"ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FXYD4,HNRNPF,MARCH8,OR13A1,RASGEF1A,RASSF4,RET,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.AZ.4684.01A	10	43132286	46321331	161	-0.1971	NEUTRAL	NA	23	"AGAP4,ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FAM21C,FXYD4,HNRNPF,MARCH8,OR13A1,RASGEF1A,RASSF4,RET,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.AA.A010.01A	10	43221256	43609880	33	-0.3416	NEUTRAL	NA	2	"BMS1,RET"
TCGA.AM.5820	10	43225805	43361151	28	0.2221	NEUTRAL	NA	1	BMS1
TCGA.CK.5914.01A	10	43325658	46233366	118	-0.453	NEUTRAL	NA	21	"ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FAM21C,FXYD4,HNRNPF,MARCH8,OR13A1,RASGEF1A,RASSF4,RET,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF485"
TCGA.AA.3968	10	43372260	74136696	9913	-0.4644	NEUTRAL	NA	150	Too-Many
TCGA.AM.5820	10	43382591	43419366	17	-0.0959	NEUTRAL	NA	0	None
TCGA.AA.3844	10	43422801	44002738	149	0.2888	NEUTRAL	NA	5	"CSGALNACT2,FXYD4,HNRNPF,RASGEF1A,RET"
TCGA.DM.A1HA	10	43479934	54902944	3235	0.0012	NEUTRAL	NA	68	"A1CF,AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CH17-360D5.1,CHAT,CSGALNACT2,CSTF2T,CXCL12,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,LRRC18,MAPK8,MARCH8,MBL2,MSMB,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PGBD3,PRKG1,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF485,ZNF488"
TCGA.AA.3861.01A	10	43595865	44868687	53	-0.2982	NEUTRAL	NA	10	"C10orf142,CSGALNACT2,CXCL12,FXYD4,HNRNPF,RASGEF1A,RET,ZNF239,ZNF32,ZNF485"
TCGA.AA.3862.01A	10	43595865	44868687	54	-0.2615	NEUTRAL	NA	10	"C10orf142,CSGALNACT2,CXCL12,FXYD4,HNRNPF,RASGEF1A,RET,ZNF239,ZNF32,ZNF485"
TCGA.AA.A01I.01A	10	43606638	135440021	5012	-0.1667	NEUTRAL	NA	560	Too-Many
TCGA.AM.5820	10	43618394	45249317	657	0.1757	NEUTRAL	NA	10	"C10orf142,CSGALNACT2,CXCL12,FXYD4,HNRNPF,RASGEF1A,RET,ZNF239,ZNF32,ZNF485"
TCGA.AG.3909.01A	10	43650550	44052159	22	-0.1881	NEUTRAL	NA	5	"CSGALNACT2,FXYD4,HNRNPF,RASGEF1A,ZNF239"
TCGA.AA.A01Q.01A	10	43650550	44340720	30	0.0412	NEUTRAL	NA	7	"CSGALNACT2,FXYD4,HNRNPF,RASGEF1A,ZNF239,ZNF32,ZNF485"
TCGA.AA.3980.01A	10	43650550	48032954	147	-0.2829	NEUTRAL	NA	31	"AGAP4,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FAM25C,FAM25G,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF485"
TCGA.AA.A010.01A	10	43691625	45480220	44	-0.1221	NEUTRAL	NA	11	"C10orf10,C10orf142,CXCL12,FXYD4,HNRNPF,RASGEF1A,RASSF4,TMEM72,ZNF239,ZNF32,ZNF485"
TCGA.AF.2689	10	43854306	43981370	29	-0.3147	NEUTRAL	NA	2	"FXYD4,HNRNPF"
TCGA.AF.2689	10	43988272	88220865	14494	0.2189	NEUTRAL	NA	212	Too-Many
TCGA.AA.3844	10	44002804	52491846	2067	-0.003	NEUTRAL	NA	57	"AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CH17-360D5.1,CHAT,CXCL12,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,GPRIN2,LRRC18,MAPK8,MARCH8,MSMB,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PGBD3,PTPN20,RASSF4,RBP3,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF485,ZNF488"
TCGA.AA.3939.01A	10	44052159	45465580	19	-0.0365	NEUTRAL	NA	7	"C10orf142,CXCL12,RASSF4,TMEM72,ZNF239,ZNF32,ZNF485"
TCGA.CA.5254	10	44068824	45798201	749	-0.1963	NEUTRAL	NA	11	"C10orf10,C10orf142,C10orf25,CXCL12,OR13A1,RASSF4,TMEM72,ZNF22,ZNF239,ZNF32,ZNF485"
TCGA.AA.3872	10	44231003	45218840	482	-0.1249	NEUTRAL	NA	2	"C10orf142,CXCL12"
TCGA.AA.A01Q.01A	10	44880327	45954516	33	-0.3878	NEUTRAL	NA	9	"ALOX5,C10orf10,C10orf25,CXCL12,MARCH8,OR13A1,RASSF4,TMEM72,ZNF22"
TCGA.A6.3807	10	45071889	47703612	417	-0.3686	NEUTRAL	NA	21	"AGAP4,AGAP9,ALOX5,ANTXRL,ANXA8,C10orf10,C10orf25,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,MARCH8,NPY4R,OR13A1,PTPN20,RASSF4,SYT15,TMEM72,ZFAND4,ZNF22"
TCGA.AA.3989	10	45230150	46943376	288	-0.29	NEUTRAL	NA	12	"AGAP4,ALOX5,C10orf10,C10orf25,FAM21C,MARCH8,OR13A1,PTPN20,RASSF4,TMEM72,ZFAND4,ZNF22"
TCGA.AA.3872	10	45230150	47096229	295	-0.165	NEUTRAL	NA	16	"AGAP4,ALOX5,C10orf10,C10orf25,CH17-360D5.1,FAM21C,GPRIN2,MARCH8,NPY4R,OR13A1,PTPN20,RASSF4,SYT15,TMEM72,ZFAND4,ZNF22"
TCGA.AA.3977	10	45230150	84799333	12542	-0.0032	NEUTRAL	NA	198	Too-Many
TCGA.AA.3662	10	45321851	132023401	29280	-0.4795	NEUTRAL	NA	521	Too-Many
TCGA.AM.5820	10	45342115	45408657	34	0.1092	NEUTRAL	NA	1	TMEM72
TCGA.AA.3833	10	45357797	45402494	23	-0.3956	NEUTRAL	NA	0	None
TCGA.AA.3833	10	45403470	47085302	216	-0.0244	NEUTRAL	NA	15	"AGAP4,ALOX5,C10orf10,C10orf25,FAM21C,GPRIN2,MARCH8,NPY4R,OR13A1,PTPN20,RASSF4,SYT15,TMEM72,ZFAND4,ZNF22"
TCGA.AA.3861.01A	10	45430104	46143740	46	-0.0538	NEUTRAL	NA	9	"ALOX5,C10orf10,C10orf25,MARCH8,OR13A1,RASSF4,TMEM72,ZFAND4,ZNF22"
TCGA.AA.3862.01A	10	45430104	46143740	46	-0.0099	NEUTRAL	NA	9	"ALOX5,C10orf10,C10orf25,MARCH8,OR13A1,RASSF4,TMEM72,ZFAND4,ZNF22"
TCGA.AM.5820	10	45433144	47592471	211	0.0256	NEUTRAL	NA	19	"AGAP4,AGAP9,ALOX5,ANXA8,C10orf10,C10orf25,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,MARCH8,NPY4R,OR13A1,PTPN20,RASSF4,SYT15,ZFAND4,ZNF22"
TCGA.AA.3939.01A	10	45467189	45939545	29	-0.392	NEUTRAL	NA	6	"ALOX5,C10orf10,C10orf25,OR13A1,RASSF4,ZNF22"
TCGA.AA.A010.01A	10	45798845	45924014	8	-0.3306	NEUTRAL	NA	2	"ALOX5,OR13A1"
TCGA.CA.5254	10	45820135	47742075	151	0.2171	NEUTRAL	NA	15	"AGAP4,AGAP9,ALOX5,ANTXRL,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,MARCH8,NPY4R,PTPN20,SYT15,ZFAND4"
TCGA.AG.3909.01A	10	45938854	46611663	43	-0.1633	NEUTRAL	NA	6	"AGAP4,ALOX5,FAM21C,MARCH8,PTPN20,ZFAND4"
TCGA.AA.A010.01A	10	45940904	46158942	19	-0.1571	NEUTRAL	NA	3	"ALOX5,MARCH8,ZFAND4"
TCGA.AG.4009.01A	10	45940904	46927743	41	-0.1659	NEUTRAL	NA	6	"AGAP4,ALOX5,FAM21C,MARCH8,PTPN20,ZFAND4"
TCGA.AA.3939.01A	10	45940904	51859700	319	0.0464	NEUTRAL	NA	44	"AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,C10orf128,C10orf53,C10orf71,CH17-360D5.1,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,GPRIN2,LRRC18,MAPK8,MARCH8,MSMB,NCOA4,NPY4R,OGDHL,PARG,PGBD3,PTPN20,RBP3,SLC18A3,SYT15,TIMM23,TIMM23B,VSTM4,WDFY4,ZFAND4,ZNF488"
TCGA.AA.A01Q.01A	10	45956632	47173832	33	0.1077	NEUTRAL	NA	10	"AGAP4,ANXA8,CH17-360D5.1,FAM21C,GPRIN2,MARCH8,NPY4R,PTPN20,SYT15,ZFAND4"
TCGA.A6.6782	10	46148749	47587330	30	-0.421	NEUTRAL	NA	12	"AGAP4,AGAP9,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15,ZFAND4"
TCGA.G4.6295	10	46210750	47546129	22	-0.5062	NEUTRAL	NA	11	"AGAP4,AGAP9,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15"
TCGA.CM.5862	10	46210750	76926702	9284	-0.1706	NEUTRAL	NA	163	Too-Many
TCGA.D5.6923	10	46215430	47617398	40	-0.4052	NEUTRAL	NA	11	"AGAP4,AGAP9,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15"
TCGA.G4.6625	10	46215430	61105474	4341	-0.1335	NEUTRAL	NA	59	"A1CF,AGAP4,AGAP6,AGAP9,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,BICC1,C10orf128,C10orf53,C10orf71,CH17-360D5.1,CHAT,CISD1,CSTF2T,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,GPRIN2,IPMK,LRRC18,MAPK8,MBL2,MSMB,MTRNR2L5,NCOA4,NPY4R,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RBP3,SGMS1,SLC18A3,SYT15,TFAM,TIMM23,TIMM23B,UBE2D1,VSTM4,WDFY4,ZNF488,ZWINT"
TCGA.DM.A28M.01A	10	46233366	49609653	104	-0.4119	NEUTRAL	NA	19	"AGAP4,AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM21C,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,GPRIN2,MAPK8,NPY4R,PTPN20,RBP3,SYT15,ZNF488"
TCGA.CK.5914.01A	10	46238788	48739323	85	-0.1148	NEUTRAL	NA	17	"AGAP4,AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GDF10,GDF2,GPRIN2,NPY4R,PTPN20,RBP3,SYT15,ZNF488"
TCGA.AA.A00N.01A	10	46245495	46611663	18	0.3324	NEUTRAL	NA	3	"AGAP4,FAM21C,PTPN20"
TCGA.CK.4952.01A	10	46338532	80945007	1752	-0.0733	NEUTRAL	NA	171	Too-Many
TCGA.A6.3808.01A	10	46927743	47086732	11	0.247	NEUTRAL	NA	4	"CH17-360D5.1,GPRIN2,NPY4R,SYT15"
TCGA.AA.3862.01A	10	46927743	47086732	11	0.06	NEUTRAL	NA	4	"CH17-360D5.1,GPRIN2,NPY4R,SYT15"
TCGA.F5.6464	10	46977565	47695562	76	-0.3274	NEUTRAL	NA	8	"AGAP9,ANTXRL,ANXA8,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R"
TCGA.RU.A8FL	10	46977565	48341333	81	-0.4585	NEUTRAL	NA	9	"AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R"
TCGA.AA.3695	10	47006368	135434550	30312	-0.3973	NEUTRAL	NA	536	Too-Many
TCGA.AA.A02Y	10	47006368	135434550	30258	-0.0037	NEUTRAL	NA	536	Too-Many
TCGA.AH.6644	10	47077738	100025094	17134	-0.0149	NEUTRAL	NA	304	Too-Many
TCGA.AG.3731	10	47085302	47742075	74	-0.3343	NEUTRAL	NA	7	"AGAP9,ANTXRL,ANXA8,CH17-360D5.1,FAM25C,FAM25G,NPY4R"
TCGA.F4.6459	10	47099687	53461265	1582	0.3134	NEUTRAL	NA	41	"A1CF,AGAP6,AGAP9,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,C10orf128,C10orf53,C10orf71,CHAT,CSTF2T,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PRKG1,PTPN20,RBP3,SGMS1,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.DM.A1D9	10	47099868	75421811	9022	0.0008	NEUTRAL	NA	141	Too-Many
TCGA.AA.3833	10	47099868	135434550	30306	-0.0131	NEUTRAL	NA	534	Too-Many
TCGA.CM.5348	10	47112546	114788814	21930	-0.0214	NEUTRAL	NA	408	Too-Many
TCGA.AA.3872	10	47112546	135434550	30262	-0.1662	NEUTRAL	NA	534	Too-Many
TCGA.AF.6136	10	47112546	135434550	30243	-0.1141	NEUTRAL	NA	534	Too-Many
TCGA.CA.6719	10	47112546	135434550	30192	-0.1404	NEUTRAL	NA	534	Too-Many
TCGA.DY.A0XA	10	47112546	135434550	30265	-0.0601	NEUTRAL	NA	534	Too-Many
TCGA.F4.6806	10	47112546	135434550	30136	-0.0157	NEUTRAL	NA	534	Too-Many
TCGA.AG.3881	10	47113089	53074038	1408	0.0269	NEUTRAL	NA	40	"A1CF,AGAP6,AGAP9,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PRKG1,PTPN20,RBP3,SGMS1,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.AZ.4323	10	47113089	66719706	6200	-0.0999	NEUTRAL	NA	69	"A1CF,ADO,AGAP6,AGAP9,ANK3,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,DKK1,DRGX,EGR2,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,IPMK,JMJD1C,LRRC18,MAPK8,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,NRBF2,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RBP3,REEP3,RHOBTB1,RTKN2,SGMS1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,VSTM4,WDFY4,ZNF365,ZNF488,ZWINT"
TCGA.CA.6716	10	47113089	135434550	30219	-0.2715	NEUTRAL	NA	534	Too-Many
TCGA.D5.6926	10	47113089	135434550	30233	-0.2071	NEUTRAL	NA	534	Too-Many
TCGA.G4.6315	10	47113089	135434550	30286	-0.2532	NEUTRAL	NA	534	Too-Many
TCGA.AA.3664	10	47117348	86638349	13008	-0.0013	NEUTRAL	NA	190	Too-Many
TCGA.AZ.6606	10	47117348	135434550	30178	0.0078	NEUTRAL	NA	534	Too-Many
TCGA.CM.6676	10	47117348	135434550	30171	-0.0853	NEUTRAL	NA	534	Too-Many
TCGA.AA.3812	10	47129683	66605131	6200	-0.0228	NEUTRAL	NA	69	"A1CF,ADO,AGAP6,AGAP9,ANK3,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,DKK1,DRGX,EGR2,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,IPMK,JMJD1C,LRRC18,MAPK8,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,NRBF2,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RBP3,REEP3,RHOBTB1,RTKN2,SGMS1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,VSTM4,WDFY4,ZNF365,ZNF488,ZWINT"
TCGA.D5.6924	10	47129683	132009694	28968	0.0723	NEUTRAL	NA	506	Too-Many
TCGA.A6.3809	10	47129683	135434550	28023	0.0042	NEUTRAL	NA	534	Too-Many
TCGA.AA.3678	10	47129683	135434550	30296	-0.0017	NEUTRAL	NA	534	Too-Many
TCGA.AG.3583	10	47136995	53189076	1404	-0.0788	NEUTRAL	NA	40	"A1CF,AGAP6,AGAP9,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PRKG1,PTPN20,RBP3,SGMS1,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.AH.6544	10	47136995	135434550	30235	0.005	NEUTRAL	NA	534	Too-Many
TCGA.AA.A00N.01A	10	47158787	47908010	10	-0.0852	NEUTRAL	NA	6	"AGAP9,ANTXRL,ANXA8,ANXA8L1,FAM25C,FAM25G"
TCGA.F5.6811.01A	10	47226605	47527062	21	0.3426	NEUTRAL	NA	0	None
TCGA.F5.6811.01A	10	47545280	135290011	5564	-8.00E-04	NEUTRAL	NA	532	Too-Many
TCGA.D5.6922	10	47546129	66222993	6048	0.0336	NEUTRAL	NA	69	"A1CF,ADO,AGAP6,AGAP9,ANK3,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,DKK1,DRGX,EGR2,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,IPMK,JMJD1C,LRRC18,MAPK8,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,NRBF2,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RBP3,REEP3,RHOBTB1,RTKN2,SGMS1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,VSTM4,WDFY4,ZNF365,ZNF488,ZWINT"
TCGA.EI.6508	10	47546129	82877973	11544	-0.0086	NEUTRAL	NA	182	Too-Many
TCGA.DY.A1DF	10	47546322	47684874	54	-0.3392	NEUTRAL	NA	1	ANTXRL
TCGA.CM.5349	10	47546322	85655441	12610	-0.0122	NEUTRAL	NA	183	Too-Many
TCGA.AA.3986	10	47546322	126580527	26584	-0.0011	NEUTRAL	NA	485	Too-Many
TCGA.D5.6534	10	47546322	135434550	30216	-0.2358	NEUTRAL	NA	534	Too-Many
TCGA.DY.A1DG	10	47546322	135434550	30280	-0.0089	NEUTRAL	NA	534	Too-Many
TCGA.EI.6881	10	47546322	135434550	30233	-0.2332	NEUTRAL	NA	534	Too-Many
TCGA.G4.6295	10	47546322	135434550	30285	0	NEUTRAL	NA	534	Too-Many
TCGA.AA.3989	10	47560112	53310769	1522	-0.2542	NEUTRAL	NA	40	"A1CF,AGAP6,AGAP9,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PRKG1,PTPN20,RBP3,SGMS1,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.CI.6621	10	47587330	116935047	22716	-0.0552	NEUTRAL	NA	423	Too-Many
TCGA.A6.6782	10	47592471	77652180	9428	-0.0019	NEUTRAL	NA	161	Too-Many
TCGA.D5.6537	10	47592471	112630856	21001	-0.014	NEUTRAL	NA	398	Too-Many
TCGA.CA.6715	10	47592471	135434550	30134	-0.0076	NEUTRAL	NA	534	Too-Many
TCGA.AF.2692	10	47597450	47742075	50	-0.1638	NEUTRAL	NA	1	ANTXRL
TCGA.A6.6781	10	47597450	135434550	27940	-0.0098	NEUTRAL	NA	534	Too-Many
TCGA.WS.AB45	10	47597450	135434550	30241	-0.0061	NEUTRAL	NA	534	Too-Many
TCGA.AD.6899	10	47612744	130079181	28004	-0.0189	NEUTRAL	NA	503	Too-Many
TCGA.D5.6923	10	47619847	135434550	30187	-0.0163	NEUTRAL	NA	534	Too-Many
TCGA.AM.5820	10	47626694	50935841	921	0.2252	NEUTRAL	NA	27	"AGAP9,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,PGBD3,PTPN20,RBP3,SLC18A3,VSTM4,WDFY4,ZNF488"
TCGA.DY.A1DF	10	47685590	54079053	1808	-0.0013	NEUTRAL	NA	42	"A1CF,AGAP6,AGAP9,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,C10orf128,C10orf53,C10orf71,CHAT,CSTF2T,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PRKG1,PTPN20,RBP3,SGMS1,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.AG.3728	10	47695268	135434550	30235	-0.2706	NEUTRAL	NA	534	Too-Many
TCGA.F5.6464	10	47703612	74760107	8902	-0.0186	NEUTRAL	NA	127	Too-Many
TCGA.G4.6299	10	47742075	62877044	4958	0.3334	NEUTRAL	NA	58	"A1CF,AGAP6,AGAP9,ANK3,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,BICC1,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,IPMK,LRRC18,MAPK8,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RBP3,RHOBTB1,SGMS1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,UBE2D1,VSTM4,WDFY4,ZNF488,ZWINT"
TCGA.A6.3807	10	47742075	135434550	30058	-0.0126	NEUTRAL	NA	533	Too-Many
TCGA.AG.3909.01A	10	47747025	49365290	52	-0.2051	NEUTRAL	NA	11	"AGAP9,ANXA8,ANXA8L1,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,PTPN20,RBP3,ZNF488"
TCGA.AG.4009.01A	10	47747025	49658257	91	-0.0639	NEUTRAL	NA	13	"AGAP9,ANXA8,ANXA8L1,ARHGAP22,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,MAPK8,PTPN20,RBP3,ZNF488"
TCGA.AA.A01Q.01A	10	47755976	49392558	19	-0.4132	NEUTRAL	NA	11	"AGAP9,ANXA8,ANXA8L1,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,PTPN20,RBP3,ZNF488"
TCGA.AA.A00Q.01A	10	47755976	49812726	58	-0.0824	NEUTRAL	NA	13	"AGAP9,ANXA8,ANXA8L1,ARHGAP22,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,MAPK8,PTPN20,RBP3,ZNF488"
TCGA.AA.A00L.01A	10	47755976	70048643	529	-0.1009	NEUTRAL	NA	76	"A1CF,ADO,AGAP6,AGAP9,ANK3,ANXA8,ANXA8L1,ARHGAP22,ARID5B,ASAH2,ASAH2B,ATOH7,BICC1,C10orf107,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,CTNNA3,DKK1,DNAJC12,DRGX,EGR2,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,HERC4,IPMK,JMJD1C,LRRC18,LRRTM3,MAPK8,MBL2,MRLN,MSMB,MTRNR2L5,MYPN,NCOA4,NRBF2,OGDHL,PARG,PBLD,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RBP3,REEP3,RHOBTB1,RTKN2,SGMS1,SIRT1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,VSTM4,WDFY4,ZNF365,ZNF488,ZWINT"
TCGA.AG.3611.01A	10	47755976	75490917	1007	0.0344	NEUTRAL	NA	141	Too-Many
TCGA.CK.4948.01B	10	48003912	48032954	6	0.2211	NEUTRAL	NA	0	None
TCGA.AZ.4684.01A	10	48003912	49482498	53	0.0836	NEUTRAL	NA	10	"AGAP9,ANXA8,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,PTPN20,RBP3,ZNF488"
TCGA.AG.A011.01A	10	48003912	51851868	182	0.0381	NEUTRAL	NA	33	"AGAP6,AGAP9,ANXA8,ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PTPN20,RBP3,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.AA.A010.01A	10	48007056	48373316	7	-0.1706	NEUTRAL	NA	5	"AGAP9,ANXA8,FAM25C,FAM25G,ZNF488"
TCGA.CA.5254	10	48318618	49906090	359	-0.2018	NEUTRAL	NA	11	"ARHGAP22,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,MAPK8,PTPN20,RBP3,WDFY4,ZNF488"
TCGA.AF.2692	10	48318618	52691751	1183	0.1623	NEUTRAL	NA	35	"A1CF,AGAP6,ARHGAP22,ASAH2,ASAH2B,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PTPN20,RBP3,SGMS1,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.AG.3731	10	48318618	62971789	4982	0.0351	NEUTRAL	NA	55	"A1CF,AGAP6,ANK3,ARHGAP22,ASAH2,ASAH2B,BICC1,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,DKK1,DRGX,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,IPMK,LRRC18,MAPK8,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RBP3,RHOBTB1,SGMS1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,UBE2D1,VSTM4,WDFY4,ZNF488,ZWINT"
TCGA.RU.A8FL	10	48342512	110445303	20387	-0.0899	NEUTRAL	NA	387	Too-Many
TCGA.AA.A00N.01A	10	48370506	49371369	23	-0.2305	NEUTRAL	NA	8	"FAM25C,FAM25G,FRMPD2,GDF10,GDF2,PTPN20,RBP3,ZNF488"
TCGA.AA.3509.01A	10	48370506	49457037	46	0.0204	NEUTRAL	NA	8	"FAM25C,FAM25G,FRMPD2,GDF10,GDF2,PTPN20,RBP3,ZNF488"
TCGA.A6.3810.01A	10	48370506	51829290	267	0.0934	NEUTRAL	NA	31	"AGAP6,ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PTPN20,RBP3,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.CK.4948.01B	10	48370506	51846957	269	-0.0832	NEUTRAL	NA	31	"AGAP6,ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,LRRC18,MAPK8,MSMB,NCOA4,OGDHL,PARG,PGBD3,PTPN20,RBP3,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4,ZNF488"
TCGA.AA.A010.01A	10	48413551	49440110	29	-0.0024	NEUTRAL	NA	6	"FAM25C,FAM25G,FRMPD2,GDF10,GDF2,PTPN20"
TCGA.AA.3980.01A	10	48438375	49642870	43	-0.1096	NEUTRAL	NA	6	"FAM25C,FAM25G,FRMPD2,GDF10,MAPK8,PTPN20"
TCGA.AA.A02K.01A	10	48438376	51130326	213	-0.4674	NEUTRAL	NA	22	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM25C,FAM25G,FRMPD2,GDF10,LRRC18,MAPK8,OGDHL,PARG,PGBD3,PTPN20,SLC18A3,VSTM4,WDFY4"
TCGA.AA.A00D.01A	10	49327262	49450156	16	-0.4044	NEUTRAL	NA	1	FRMPD2
TCGA.AA.A02F.01A	10	49383834	51549500	121	-0.5094	NEUTRAL	NA	19	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FRMPD2,LRRC18,MAPK8,OGDHL,PARG,PGBD3,SLC18A3,TIMM23B,VSTM4,WDFY4"
TCGA.AA.3862.01A	10	49392558	51051539	198	-0.1997	NEUTRAL	NA	18	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FRMPD2,LRRC18,MAPK8,OGDHL,PARG,PGBD3,SLC18A3,VSTM4,WDFY4"
TCGA.AA.A01Q.01A	10	49393546	49658257	31	0.1453	NEUTRAL	NA	3	"ARHGAP22,FRMPD2,MAPK8"
TCGA.AA.A00D.01A	10	49452772	50668377	51	-0.0807	NEUTRAL	NA	11	"ARHGAP22,C10orf128,C10orf71,DRGX,ERCC6,FAM170B,FRMPD2,LRRC18,MAPK8,VSTM4,WDFY4"
TCGA.CK.5914.01A	10	49482498	50594505	111	0.128	NEUTRAL	NA	10	"ARHGAP22,C10orf128,C10orf71,DRGX,FAM170B,FRMPD2,LRRC18,MAPK8,VSTM4,WDFY4"
TCGA.AG.3909.01A	10	49612863	49654384	12	-0.2839	NEUTRAL	NA	2	"ARHGAP22,MAPK8"
TCGA.AA.3861.01A	10	49628181	51051539	175	-0.2691	NEUTRAL	NA	17	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,LRRC18,MAPK8,OGDHL,PARG,PGBD3,SLC18A3,VSTM4,WDFY4"
TCGA.AZ.4684.01A	10	49635084	51065331	171	-0.1127	NEUTRAL	NA	17	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,LRRC18,MAPK8,OGDHL,PARG,PGBD3,SLC18A3,VSTM4,WDFY4"
TCGA.AA.3509.01A	10	49654384	51225493	175	0.001	NEUTRAL	NA	16	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,LRRC18,OGDHL,PARG,PGBD3,SLC18A3,VSTM4,WDFY4"
TCGA.DM.A28M.01A	10	49654384	51829290	202	-0.1799	NEUTRAL	NA	22	"AGAP6,ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,LRRC18,MSMB,NCOA4,OGDHL,PARG,PGBD3,SLC18A3,TIMM23,TIMM23B,VSTM4,WDFY4"
TCGA.AG.3909.01A	10	49658257	50396263	29	0.226	NEUTRAL	NA	6	"ARHGAP22,C10orf128,FAM170B,LRRC18,VSTM4,WDFY4"
TCGA.AA.A01Q.01A	10	49662998	69299234	416	0.0666	NEUTRAL	NA	58	"A1CF,ADO,AGAP6,ANK3,ARHGAP22,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,CTNNA3,DKK1,DRGX,EGR2,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,IPMK,JMJD1C,LRRC18,LRRTM3,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,NRBF2,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SGMS1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,VSTM4,WDFY4,ZNF365,ZWINT"
TCGA.AG.4009.01A	10	49687604	50740607	47	0.0214	NEUTRAL	NA	11	"ARHGAP22,C10orf128,C10orf71,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,LRRC18,PGBD3,VSTM4,WDFY4"
TCGA.CA.5254	10	49907312	50390193	295	0.2221	NEUTRAL	NA	5	"C10orf128,FAM170B,LRRC18,VSTM4,WDFY4"
TCGA.AA.A00Q.01A	10	50118196	50690691	24	-0.0667	NEUTRAL	NA	8	"C10orf128,C10orf71,DRGX,ERCC6,FAM170B,LRRC18,VSTM4,WDFY4"
TCGA.AA.A00N.01A	10	50190512	50594505	24	0.264	NEUTRAL	NA	6	"C10orf128,C10orf71,DRGX,FAM170B,VSTM4,WDFY4"
TCGA.AA.A010.01A	10	50363853	69948620	525	0.1537	NEUTRAL	NA	57	"A1CF,ADO,AGAP6,ANK3,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,CTNNA3,DKK1,DNAJC12,DRGX,EGR2,ERCC6,ERCC6-PGBD3,FAM13C,FAM21A,HERC4,IPMK,JMJD1C,LRRTM3,MBL2,MRLN,MSMB,MTRNR2L5,MYPN,NCOA4,NRBF2,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SGMS1,SIRT1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.CA.5254	10	50395139	51122581	251	-0.2698	NEUTRAL	NA	11	"C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,OGDHL,PARG,PGBD3,SLC18A3"
TCGA.CK.5914.01A	10	50603382	51465430	82	0.084	NEUTRAL	NA	10	"C10orf53,CHAT,DRGX,ERCC6,ERCC6-PGBD3,OGDHL,PARG,PGBD3,SLC18A3,TIMM23B"
TCGA.AG.A01W.01A	10	50618716	74607579	1061	0.3224	NEUTRAL	NA	105	Too-Many
TCGA.AG.3909.01A	10	50666819	50732052	17	0.0472	NEUTRAL	NA	3	"ERCC6,ERCC6-PGBD3,PGBD3"
TCGA.AA.A00D.01A	10	50669371	50957720	49	-0.4495	NEUTRAL	NA	7	"C10orf53,CHAT,ERCC6,ERCC6-PGBD3,OGDHL,PGBD3,SLC18A3"
TCGA.AA.A00Q.01A	10	50691365	50856506	20	-0.5118	NEUTRAL	NA	5	"CHAT,ERCC6,ERCC6-PGBD3,PGBD3,SLC18A3"
TCGA.AA.A01F.01A	10	50736416	50833471	11	-0.1763	NEUTRAL	NA	4	"CHAT,ERCC6,ERCC6-PGBD3,SLC18A3"
TCGA.A6.A56B	10	50751225	74647823	8030	-0.4292	NEUTRAL	NA	102	Too-Many
TCGA.AG.3909.01A	10	50828524	51465876	47	-0.0427	NEUTRAL	NA	5	"C10orf53,CHAT,OGDHL,PARG,TIMM23B"
TCGA.AG.4009.01A	10	50833471	50960140	28	-0.0952	NEUTRAL	NA	3	"C10orf53,CHAT,OGDHL"
TCGA.AA.A01F.01A	10	50835632	50916380	11	0.1346	NEUTRAL	NA	2	"C10orf53,CHAT"
TCGA.AA.A00N.01A	10	50854524	50966383	30	0.0925	NEUTRAL	NA	3	"C10orf53,CHAT,OGDHL"
TCGA.AA.A00Q.01A	10	50857507	73521353	725	-0.0829	NEUTRAL	NA	92	"A1CF,ADAMTS14,ADO,AGAP6,AIFM2,ANK3,ARID5B,ASAH2,ASAH2B,ATOH7,BICC1,C10orf105,C10orf107,C10orf35,C10orf53,C10orf54,CCAR1,CCDC6,CDH23,CDK1,CHAT,CISD1,COL13A1,CSTF2T,CTNNA3,DDX21,DDX50,DKK1,DNA2,DNAJC12,EGR2,EIF4EBP2,FAM13C,FAM21A,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,IPMK,JMJD1C,KIAA1279,LRRC20,LRRTM3,MBL2,MRLN,MSMB,MTRNR2L5,MYPN,NCOA4,NEUROG3,NODAL,NPFFR1,NRBF2,OGDHL,PALD1,PARG,PBLD,PCBD1,PCDH15,PHYHIPL,PPA1,PRF1,PRKG1,REEP3,RHOBTB1,RTKN2,RUFY2,SAR1A,SGMS1,SGPL1,SIRT1,SLC16A9,SLC25A16,SLC29A3,SRGN,STOX1,SUPV3L1,TACR2,TBATA,TET1,TFAM,TIMM23,TIMM23B,TMEM26,TSPAN15,TYSND1,UBE2D1,UNC5B,VPS26A,ZNF365,ZWINT"
TCGA.AG.3906.01A	10	50943236	50966383	19	-0.4839	NEUTRAL	NA	1	OGDHL
TCGA.AG.A01L.01A	10	50950835	51843782	44	-0.064	NEUTRAL	NA	8	"AGAP6,FAM21A,MSMB,NCOA4,OGDHL,PARG,TIMM23,TIMM23B"
TCGA.AA.A00D.01A	10	50958858	51613176	25	0.0395	NEUTRAL	NA	6	"MSMB,NCOA4,OGDHL,PARG,TIMM23,TIMM23B"
TCGA.AG.3891.01A	10	50964783	51857398	45	-0.0647	NEUTRAL	NA	8	"AGAP6,FAM21A,MSMB,NCOA4,OGDHL,PARG,TIMM23,TIMM23B"
TCGA.AM.5820	10	50997462	71100725	6619	-0.0261	NEUTRAL	NA	64	"A1CF,ADO,AGAP6,ANK3,ARID5B,ASAH2,ASAH2B,ATOH7,BICC1,C10orf107,CCAR1,CCDC6,CDK1,CISD1,CSTF2T,CTNNA3,DDX21,DDX50,DKK1,DNA2,DNAJC12,EGR2,FAM13C,FAM21A,HERC4,HK1,HKDC1,HNRNPH3,IPMK,JMJD1C,KIAA1279,LRRTM3,MBL2,MRLN,MSMB,MTRNR2L5,MYPN,NCOA4,NRBF2,PARG,PBLD,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,RUFY2,SGMS1,SIRT1,SLC16A9,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,VPS26A,ZNF365,ZWINT"
TCGA.AG.4009.01A	10	51065331	63977912	308	-0.0321	NEUTRAL	NA	35	"A1CF,AGAP6,ANK3,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,DKK1,FAM13C,FAM21A,IPMK,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,PARG,PCDH15,PHYHIPL,PRKG1,RHOBTB1,RTKN2,SGMS1,SLC16A9,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,ZWINT"
TCGA.AG.3906.01A	10	51065331	69935032	444	-0.0808	NEUTRAL	NA	47	"A1CF,ADO,AGAP6,ANK3,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,CTNNA3,DKK1,DNAJC12,EGR2,FAM13C,FAM21A,HERC4,IPMK,JMJD1C,LRRTM3,MBL2,MRLN,MSMB,MTRNR2L5,MYPN,NCOA4,NRBF2,PARG,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SGMS1,SIRT1,SLC16A9,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AA.3980.01A	10	51225493	51974455	44	-0.1331	NEUTRAL	NA	8	"AGAP6,ASAH2,FAM21A,MSMB,NCOA4,PARG,TIMM23,TIMM23B"
TCGA.AZ.4684.01A	10	51370803	51620253	21	-0.3367	NEUTRAL	NA	5	"MSMB,NCOA4,PARG,TIMM23,TIMM23B"
TCGA.AA.A01F.01A	10	51381718	60128405	123	0.0942	NEUTRAL	NA	20	"A1CF,AGAP6,ASAH2,ASAH2B,CISD1,CSTF2T,DKK1,FAM21A,IPMK,MBL2,MSMB,MTRNR2L5,NCOA4,PCDH15,PRKG1,SGMS1,TIMM23,TIMM23B,UBE2D1,ZWINT"
TCGA.AA.3861.01A	10	51464824	51586543	16	-0.3719	NEUTRAL	NA	3	"MSMB,NCOA4,TIMM23B"
TCGA.AA.3862.01A	10	51464824	51592466	18	-0.0921	NEUTRAL	NA	4	"MSMB,NCOA4,TIMM23,TIMM23B"
TCGA.AA.3509.01A	10	51464824	51829290	22	-0.2782	NEUTRAL	NA	6	"AGAP6,FAM21A,MSMB,NCOA4,TIMM23,TIMM23B"
TCGA.CK.5914.01A	10	51465876	51846957	25	-0.4927	NEUTRAL	NA	6	"AGAP6,FAM21A,MSMB,NCOA4,TIMM23,TIMM23B"
TCGA.CA.5254	10	51496795	52194089	133	0.2053	NEUTRAL	NA	8	"AGAP6,ASAH2,FAM21A,MSMB,NCOA4,SGMS1,TIMM23,TIMM23B"
TCGA.AA.A02F.01A	10	51579111	51853582	16	-0.3623	NEUTRAL	NA	5	"AGAP6,FAM21A,NCOA4,TIMM23,TIMM23B"
TCGA.AA.A02K.01A	10	51751483	51866058	12	-0.2236	NEUTRAL	NA	2	"AGAP6,FAM21A"
TCGA.AG.A01L.01A	10	51845208	51866057	10	0.3212	NEUTRAL	NA	1	FAM21A
TCGA.CK.4948.01B	10	51851868	51893150	17	-0.4097	NEUTRAL	NA	1	FAM21A
TCGA.AG.A011.01A	10	51852979	51892549	13	0.3563	NEUTRAL	NA	1	FAM21A
TCGA.AA.A00N.01A	10	51852979	51893150	14	0.2344	NEUTRAL	NA	1	FAM21A
TCGA.AA.3509.01A	10	51859700	52573567	27	-0.4293	NEUTRAL	NA	5	"A1CF,ASAH2,ASAH2B,FAM21A,SGMS1"
TCGA.AG.A01L.01A	10	51873608	60128405	121	-0.1612	NEUTRAL	NA	15	"A1CF,ASAH2,ASAH2B,CISD1,CSTF2T,DKK1,FAM21A,IPMK,MBL2,MTRNR2L5,PCDH15,PRKG1,SGMS1,UBE2D1,ZWINT"
TCGA.AG.3891.01A	10	51877619	51892549	7	0.1388	NEUTRAL	NA	1	FAM21A
TCGA.AA.A02K.01A	10	51877620	58120882	103	-0.4444	NEUTRAL	NA	12	"A1CF,ASAH2,ASAH2B,CSTF2T,DKK1,FAM21A,MBL2,MTRNR2L5,PCDH15,PRKG1,SGMS1,ZWINT"
TCGA.AZ.4684.01A	10	51970526	52502627	13	-0.0495	NEUTRAL	NA	3	"ASAH2,ASAH2B,SGMS1"
TCGA.CK.4948.01B	10	51970526	94833655	2112	-0.063	NEUTRAL	NA	210	Too-Many
TCGA.AA.A00D.01A	10	51974455	53667202	34	-0.4305	NEUTRAL	NA	6	"A1CF,ASAH2,ASAH2B,CSTF2T,PRKG1,SGMS1"
TCGA.AG.A011.01A	10	51974455	55570269	54	-0.053	NEUTRAL	NA	9	"A1CF,ASAH2,ASAH2B,CSTF2T,DKK1,MBL2,PCDH15,PRKG1,SGMS1"
TCGA.AG.3891.01A	10	51974455	56367578	95	-0.3347	NEUTRAL	NA	9	"A1CF,ASAH2,ASAH2B,CSTF2T,DKK1,MBL2,PCDH15,PRKG1,SGMS1"
TCGA.AA.3939.01A	10	51974455	62631218	232	0.0448	NEUTRAL	NA	24	"A1CF,ANK3,ASAH2,ASAH2B,BICC1,CCDC6,CDK1,CISD1,CSTF2T,DKK1,FAM13C,IPMK,MBL2,MRLN,MTRNR2L5,PCDH15,PHYHIPL,PRKG1,RHOBTB1,SGMS1,SLC16A9,TFAM,UBE2D1,ZWINT"
TCGA.AA.3861.01A	10	51974455	70546256	503	-0.2622	NEUTRAL	NA	48	"A1CF,ADO,ANK3,ARID5B,ASAH2,ASAH2B,ATOH7,BICC1,C10orf107,CCAR1,CCDC6,CDK1,CISD1,CSTF2T,CTNNA3,DKK1,DNA2,DNAJC12,EGR2,FAM13C,HERC4,HNRNPH3,IPMK,JMJD1C,LRRTM3,MBL2,MRLN,MTRNR2L5,MYPN,NRBF2,PBLD,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,RUFY2,SGMS1,SIRT1,SLC16A9,SLC25A16,TET1,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.A6.3810.01A	10	51994136	76970876	1283	0.0189	NEUTRAL	NA	123	Too-Many
TCGA.AA.3980.01A	10	51994136	134748208	5135	-0.4976	NEUTRAL	NA	483	Too-Many
TCGA.DM.A28M.01A	10	52002913	62544426	224	-0.0189	NEUTRAL	NA	23	"A1CF,ANK3,ASAH2,ASAH2B,BICC1,CCDC6,CDK1,CISD1,CSTF2T,DKK1,FAM13C,IPMK,MBL2,MRLN,MTRNR2L5,PCDH15,PHYHIPL,PRKG1,SGMS1,SLC16A9,TFAM,UBE2D1,ZWINT"
TCGA.AA.3862.01A	10	52002913	69665957	364	-0.3432	NEUTRAL	NA	38	"A1CF,ADO,ANK3,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,CTNNA3,DKK1,DNAJC12,EGR2,FAM13C,IPMK,JMJD1C,LRRTM3,MBL2,MRLN,MTRNR2L5,NRBF2,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SGMS1,SIRT1,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AH.6549.01A	10	52002913	135440021	5291	-0.0267	NEUTRAL	NA	500	Too-Many
TCGA.AG.3909.01A	10	52066885	52504854	7	-0.2277	NEUTRAL	NA	2	"ASAH2B,SGMS1"
TCGA.CK.5914.01A	10	52066885	52514287	9	-0.4557	NEUTRAL	NA	2	"ASAH2B,SGMS1"
TCGA.AA.A00F.01A	10	52086933	52512181	6	-0.0758	NEUTRAL	NA	2	"ASAH2B,SGMS1"
TCGA.CA.5254	10	52196944	53946013	704	-0.123	NEUTRAL	NA	5	"A1CF,ASAH2B,CSTF2T,PRKG1,SGMS1"
TCGA.AG.3909.01A	10	52514287	53564297	20	0.2546	NEUTRAL	NA	4	"A1CF,ASAH2B,CSTF2T,PRKG1"
TCGA.AA.A00F.01A	10	52514287	54076003	36	-0.4287	NEUTRAL	NA	5	"A1CF,ASAH2B,CSTF2T,DKK1,PRKG1"
TCGA.AA.3844	10	52516858	55664004	1302	-0.3844	NEUTRAL	NA	6	"A1CF,CSTF2T,DKK1,MBL2,PCDH15,PRKG1"
TCGA.AA.3941	10	52516858	57966195	2051	-0.4804	NEUTRAL	NA	7	"A1CF,CSTF2T,DKK1,MBL2,MTRNR2L5,PCDH15,PRKG1"
TCGA.AA.3811	10	52524782	61148749	3128	-0.498	NEUTRAL	NA	15	"A1CF,BICC1,CISD1,CSTF2T,DKK1,FAM13C,IPMK,MBL2,MTRNR2L5,PCDH15,PHYHIPL,PRKG1,TFAM,UBE2D1,ZWINT"
TCGA.AZ.4684.01A	10	52566459	64936020	284	0.3111	NEUTRAL	NA	30	"A1CF,ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,DKK1,EGR2,FAM13C,IPMK,JMJD1C,MBL2,MRLN,MTRNR2L5,NRBF2,PCDH15,PHYHIPL,PRKG1,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.A6.6650	10	52630184	53188836	199	-0.2235	NEUTRAL	NA	2	"A1CF,PRKG1"
TCGA.AF.2692	10	52706899	131503320	27556	-0.1326	NEUTRAL	NA	465	Too-Many
TCGA.AA.3867	10	52711774	55664004	1248	-0.3112	NEUTRAL	NA	5	"CSTF2T,DKK1,MBL2,PCDH15,PRKG1"
TCGA.D5.6929	10	52830634	53095118	111	-0.3192	NEUTRAL	NA	1	PRKG1
TCGA.G4.6310	10	52877132	53336234	208	-0.3193	NEUTRAL	NA	1	PRKG1
TCGA.EF.5830	10	52991509	59827873	2533	-0.0136	NEUTRAL	NA	7	"CSTF2T,DKK1,MBL2,MTRNR2L5,PCDH15,PRKG1,ZWINT"
TCGA.AA.3693	10	52995973	135434550	28919	0.0045	NEUTRAL	NA	495	Too-Many
TCGA.D5.6931	10	52997354	53158752	66	-0.3657	NEUTRAL	NA	1	PRKG1
TCGA.AG.A026	10	53009469	53262632	135	0.0029	NEUTRAL	NA	1	PRKG1
TCGA.AG.A020	10	53009734	55076781	934	0.1596	NEUTRAL	NA	4	"CSTF2T,DKK1,MBL2,PRKG1"
TCGA.EI.6512	10	53048203	53320712	138	-0.3509	NEUTRAL	NA	1	PRKG1
TCGA.AG.3881	10	53077412	53198883	51	-0.4001	NEUTRAL	NA	1	PRKG1
TCGA.D5.6929	10	53102505	135434550	28819	-0.029	NEUTRAL	NA	495	Too-Many
TCGA.D5.6931	10	53187619	53333523	92	-0.3622	NEUTRAL	NA	1	PRKG1
TCGA.A6.5666	10	53193249	66062322	4583	-0.209	NEUTRAL	NA	30	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,DKK1,EGR2,FAM13C,IPMK,JMJD1C,MBL2,MRLN,MTRNR2L5,NRBF2,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AG.3881	10	53199409	67549938	5058	0.0404	NEUTRAL	NA	30	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,DKK1,EGR2,FAM13C,IPMK,JMJD1C,MBL2,MRLN,MTRNR2L5,NRBF2,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.CM.6170	10	53217521	135434550	28806	-0.2212	NEUTRAL	NA	495	Too-Many
TCGA.AA.3531	10	53237720	135434550	28786	0.0324	NEUTRAL	NA	495	Too-Many
TCGA.F4.6461	10	53246906	55893205	1121	-0.284	NEUTRAL	NA	5	"CSTF2T,DKK1,MBL2,PCDH15,PRKG1"
TCGA.AD.6890	10	53250878	53416633	74	-0.4342	NEUTRAL	NA	1	PRKG1
TCGA.AG.A026	10	53263507	53454070	65	-0.476	NEUTRAL	NA	1	PRKG1
TCGA.5M.AAT4	10	53303541	53404012	45	-0.3069	NEUTRAL	NA	1	PRKG1
TCGA.AA.3989	10	53316742	55664004	975	-0.3063	NEUTRAL	NA	5	"CSTF2T,DKK1,MBL2,PCDH15,PRKG1"
TCGA.EI.6512	10	53322007	135434550	28754	-0.0096	NEUTRAL	NA	495	Too-Many
TCGA.G4.6310	10	53336731	135434550	28729	-0.0376	NEUTRAL	NA	495	Too-Many
TCGA.D5.6931	10	53347933	53562134	70	-0.32	NEUTRAL	NA	2	"CSTF2T,PRKG1"
TCGA.DM.A28F	10	53366179	53545132	48	-0.0203	NEUTRAL	NA	2	"CSTF2T,PRKG1"
TCGA.AA.3549	10	53370446	135434550	28731	-0.0045	NEUTRAL	NA	495	Too-Many
TCGA.AG.3583	10	53392383	53398188	5	-0.4071	NEUTRAL	NA	1	PRKG1
TCGA.AG.3583	10	53403985	135434550	27987	-0.0094	NEUTRAL	NA	495	Too-Many
TCGA.5M.AAT4	10	53416511	65166669	4187	0.108	NEUTRAL	NA	29	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,DKK1,EGR2,FAM13C,IPMK,JMJD1C,MBL2,MRLN,MTRNR2L5,NRBF2,PCDH15,PHYHIPL,PRKG1,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AD.6890	10	53418487	132897428	27932	-0.01	NEUTRAL	NA	468	Too-Many
TCGA.DM.A28H	10	53454070	135434550	28666	-0.0033	NEUTRAL	NA	495	Too-Many
TCGA.F4.6459	10	53461593	53559045	36	-0.0248	NEUTRAL	NA	1	PRKG1
TCGA.AG.A026	10	53465236	53497349	10	-0.5105	NEUTRAL	NA	1	PRKG1
TCGA.AG.A026	10	53497421	53529994	16	0.1724	NEUTRAL	NA	1	PRKG1
TCGA.DM.A28F	10	53545981	53627571	21	-0.4736	NEUTRAL	NA	1	PRKG1
TCGA.F4.6459	10	53560897	72442041	6604	0.3508	NEUTRAL	NA	69	"ADAMTS14,ADO,AIFM2,ANK3,ARID5B,ATOH7,BICC1,C10orf107,C10orf35,CCAR1,CCDC6,CDK1,CISD1,COL13A1,CTNNA3,DDX21,DDX50,DKK1,DNA2,DNAJC12,EGR2,EIF4EBP2,FAM13C,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,IPMK,JMJD1C,KIAA1279,LRRC20,LRRTM3,MBL2,MRLN,MTRNR2L5,MYPN,NEUROG3,NODAL,NPFFR1,NRBF2,PALD1,PBLD,PCDH15,PHYHIPL,PPA1,PRF1,PRKG1,REEP3,RHOBTB1,RTKN2,RUFY2,SAR1A,SIRT1,SLC16A9,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TFAM,TMEM26,TSPAN15,TYSND1,UBE2D1,VPS26A,ZNF365,ZWINT"
TCGA.D5.6931	10	53569924	135434550	28604	-0.0054	NEUTRAL	NA	494	Too-Many
TCGA.DM.A1DB	10	53607710	65285484	4148	0.0049	NEUTRAL	NA	29	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,DKK1,EGR2,FAM13C,IPMK,JMJD1C,MBL2,MRLN,MTRNR2L5,NRBF2,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AG.A026	10	53620667	53859439	141	0.0365	NEUTRAL	NA	1	PRKG1
TCGA.G4.6626	10	53627571	65677926	4271	-0.0115	NEUTRAL	NA	29	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,DKK1,EGR2,FAM13C,IPMK,JMJD1C,MBL2,MRLN,MTRNR2L5,NRBF2,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AG.3909.01A	10	53667202	54074656	16	-0.0955	NEUTRAL	NA	2	"DKK1,PRKG1"
TCGA.AG.3883	10	53694966	135434550	28633	-0.0648	NEUTRAL	NA	494	Too-Many
TCGA.DM.A28F	10	53707748	135434550	28555	-0.0443	NEUTRAL	NA	494	Too-Many
TCGA.AA.A00D.01A	10	53814211	60145931	77	-0.1042	NEUTRAL	NA	10	"CISD1,DKK1,IPMK,MBL2,MTRNR2L5,PCDH15,PRKG1,TFAM,UBE2D1,ZWINT"
TCGA.AG.A026	10	53859543	53959454	48	-0.4538	NEUTRAL	NA	1	PRKG1
TCGA.CA.5254	10	53959054	54516330	205	0.2178	NEUTRAL	NA	2	"DKK1,PRKG1"
TCGA.AG.A026	10	53960062	78007093	7810	-0.0146	NEUTRAL	NA	121	Too-Many
TCGA.AA.A00N.01A	10	54011282	54041872	5	0.1186	NEUTRAL	NA	1	PRKG1
TCGA.AA.A00N.01A	10	54048469	55755352	30	-0.4323	NEUTRAL	NA	4	"DKK1,MBL2,PCDH15,PRKG1"
TCGA.CK.5914.01A	10	54074168	60544744	80	-0.1824	NEUTRAL	NA	10	"BICC1,CISD1,DKK1,IPMK,MBL2,MTRNR2L5,PCDH15,TFAM,UBE2D1,ZWINT"
TCGA.DY.A1DF	10	54082534	54351104	85	-0.4528	NEUTRAL	NA	0	None
TCGA.D5.6932	10	54148043	87488879	11449	5.00E-04	NEUTRAL	NA	149	Too-Many
TCGA.DY.A1DF	10	54357182	58828930	1590	0.0387	NEUTRAL	NA	4	"MBL2,MTRNR2L5,PCDH15,ZWINT"
TCGA.CA.5254	10	54517226	61303046	2350	-0.1334	NEUTRAL	NA	11	"BICC1,CISD1,FAM13C,IPMK,MBL2,MTRNR2L5,PCDH15,PHYHIPL,TFAM,UBE2D1,ZWINT"
TCGA.AA.A00F.01A	10	54527859	55826480	24	-0.1494	NEUTRAL	NA	2	"MBL2,PCDH15"
TCGA.A6.2679	10	55300651	57245019	659	-0.3899	NEUTRAL	NA	1	PCDH15
TCGA.DM.A1HA	10	55560709	55647275	28	-0.0354	NEUTRAL	NA	1	PCDH15
TCGA.AG.A011.01A	10	55571274	55591033	8	-0.3959	NEUTRAL	NA	1	PCDH15
TCGA.AG.A011.01A	10	55600033	68979314	277	-0.0098	NEUTRAL	NA	28	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CTNNA3,EGR2,FAM13C,IPMK,JMJD1C,LRRTM3,MRLN,MTRNR2L5,NRBF2,PCDH15,PHYHIPL,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AA.3845	10	55686644	56377972	298	-0.1136	NEUTRAL	NA	1	PCDH15
TCGA.AA.3989	10	55686644	71676399	5398	-0.324	NEUTRAL	NA	54	"ADO,ANK3,ARID5B,ATOH7,BICC1,C10orf107,C10orf35,CCAR1,CCDC6,CDK1,CISD1,COL13A1,CTNNA3,DDX21,DDX50,DNA2,DNAJC12,EGR2,FAM13C,HERC4,HK1,HKDC1,HNRNPH3,IPMK,JMJD1C,KIAA1279,LRRTM3,MRLN,MTRNR2L5,MYPN,NEUROG3,NRBF2,PBLD,PCDH15,PHYHIPL,REEP3,RHOBTB1,RTKN2,RUFY2,SIRT1,SLC16A9,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TFAM,TMEM26,TSPAN15,UBE2D1,VPS26A,ZNF365,ZWINT"
TCGA.AA.3846	10	55686644	135434550	27749	-0.0065	NEUTRAL	NA	491	Too-Many
TCGA.AG.3909.01A	10	55779935	59975858	31	-0.0445	NEUTRAL	NA	4	"IPMK,MTRNR2L5,PCDH15,ZWINT"
TCGA.AA.3666	10	55860723	58215450	746	-0.0057	NEUTRAL	NA	3	"MTRNR2L5,PCDH15,ZWINT"
TCGA.AA.3952	10	55884788	58973601	984	-0.221	NEUTRAL	NA	3	"MTRNR2L5,PCDH15,ZWINT"
TCGA.F4.6461	10	55895815	70388378	4793	0.036	NEUTRAL	NA	39	"ADO,ANK3,ARID5B,ATOH7,BICC1,C10orf107,CCDC6,CDK1,CISD1,CTNNA3,DNA2,DNAJC12,EGR2,FAM13C,HERC4,HNRNPH3,IPMK,JMJD1C,LRRTM3,MRLN,MTRNR2L5,MYPN,NRBF2,PBLD,PCDH15,PHYHIPL,REEP3,RHOBTB1,RTKN2,RUFY2,SIRT1,SLC16A9,SLC25A16,TET1,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.DM.A1HA	10	56131788	63176707	2393	0.0243	NEUTRAL	NA	17	"ANK3,BICC1,CCDC6,CDK1,CISD1,FAM13C,IPMK,MRLN,MTRNR2L5,PCDH15,PHYHIPL,RHOBTB1,SLC16A9,TFAM,TMEM26,UBE2D1,ZWINT"
TCGA.AA.3845	10	56394512	107690519	16483	0.0352	NEUTRAL	NA	347	Too-Many
TCGA.DM.A1D0	10	56896642	77236477	6371	0.05	NEUTRAL	NA	117	Too-Many
TCGA.AG.3592	10	57039061	107928303	16433	-0.4657	NEUTRAL	NA	346	Too-Many
TCGA.A6.2681	10	57075824	89555713	10893	-0.108	NEUTRAL	NA	162	Too-Many
TCGA.G4.6314	10	57098858	135434550	27279	0.0946	NEUTRAL	NA	490	Too-Many
TCGA.A6.2679	10	57250128	135434550	27223	-0.0113	NEUTRAL	NA	490	Too-Many
TCGA.AA.3867	10	57572232	59579402	677	-0.4971	NEUTRAL	NA	1	ZWINT
TCGA.D5.6535	10	57576057	68915511	3976	-0.352	NEUTRAL	NA	26	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CTNNA3,EGR2,FAM13C,IPMK,JMJD1C,LRRTM3,MRLN,NRBF2,PHYHIPL,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AY.5543	10	57881319	58879796	316	0.0147	NEUTRAL	NA	1	ZWINT
TCGA.AA.3941	10	57997347	61199166	1069	-0.4443	NEUTRAL	NA	8	"BICC1,CISD1,FAM13C,IPMK,PHYHIPL,TFAM,UBE2D1,ZWINT"
TCGA.G4.6297	10	58153172	77469229	6100	0.1432	NEUTRAL	NA	115	Too-Many
TCGA.AA.A01T	10	58198637	65245674	2437	0.0369	NEUTRAL	NA	22	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,EGR2,FAM13C,IPMK,JMJD1C,MRLN,NRBF2,PHYHIPL,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365"
TCGA.NH.A6GC	10	58482755	90593691	10876	-0.4894	NEUTRAL	NA	169	Too-Many
TCGA.AA.3850	10	58532764	61199166	948	-0.49815	NEUTRAL	NA	7	"BICC1,CISD1,FAM13C,IPMK,PHYHIPL,TFAM,UBE2D1"
TCGA.CL.4957	10	58729511	65385519	2295	-0.3656	NEUTRAL	NA	23	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,EGR2,FAM13C,IPMK,JMJD1C,MRLN,NRBF2,PHYHIPL,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365"
TCGA.AY.5543	10	58890760	135434550	26534	-0.0128	NEUTRAL	NA	488	Too-Many
TCGA.AA.3952	10	58995293	75919689	5525	0.2681	NEUTRAL	NA	107	Too-Many
TCGA.AA.3844	10	59267001	69389906	3538	-0.3136	NEUTRAL	NA	25	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CTNNA3,EGR2,FAM13C,IPMK,JMJD1C,LRRTM3,MRLN,NRBF2,PHYHIPL,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365"
TCGA.AA.3867	10	59579679	59651683	17	0.0934	NEUTRAL	NA	0	None
TCGA.AA.3867	10	59658368	116895718	18930	-0.1117	NEUTRAL	NA	377	Too-Many
TCGA.AG.3891.01A	10	59955799	69407125	247	-0.1787	NEUTRAL	NA	25	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CTNNA3,EGR2,FAM13C,IPMK,JMJD1C,LRRTM3,MRLN,NRBF2,PHYHIPL,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365"
TCGA.AA.A02K.01A	10	59955800	60154687	21	-0.1741	NEUTRAL	NA	4	"CISD1,IPMK,TFAM,UBE2D1"
TCGA.AA.A00F.01A	10	59958950	60154641	20	-0.1036	NEUTRAL	NA	4	"CISD1,IPMK,TFAM,UBE2D1"
TCGA.AA.A00N.01A	10	59975858	60154641	20	-0.4545	NEUTRAL	NA	4	"CISD1,IPMK,TFAM,UBE2D1"
TCGA.AF.3914.01A	10	59975858	64429928	184	0.0495	NEUTRAL	NA	18	"ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,FAM13C,IPMK,MRLN,PHYHIPL,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365"
TCGA.AA.A02F.01A	10	60036836	62149161	112	0.3364	NEUTRAL	NA	10	"ANK3,BICC1,CCDC6,CISD1,FAM13C,MRLN,PHYHIPL,SLC16A9,TFAM,UBE2D1"
TCGA.AA.A01F.01A	10	60145257	60461772	10	-0.1957	NEUTRAL	NA	2	"BICC1,TFAM"
TCGA.AG.A01L.01A	10	60154641	70986926	438	-0.1459	NEUTRAL	NA	42	"ADO,ANK3,ARID5B,ATOH7,BICC1,C10orf107,CCAR1,CCDC6,CDK1,CTNNA3,DDX21,DDX50,DNA2,DNAJC12,EGR2,FAM13C,HERC4,HKDC1,HNRNPH3,JMJD1C,KIAA1279,LRRTM3,MRLN,MYPN,NRBF2,PBLD,PHYHIPL,REEP3,RHOBTB1,RTKN2,RUFY2,SIRT1,SLC16A9,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,TFAM,TMEM26,VPS26A,ZNF365"
TCGA.AG.3909.01A	10	60272874	62444256	102	0.1676	NEUTRAL	NA	7	"ANK3,BICC1,CCDC6,FAM13C,MRLN,PHYHIPL,SLC16A9"
TCGA.AA.A00F.01A	10	60272874	69597644	193	-0.3854	NEUTRAL	NA	22	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CTNNA3,DNAJC12,EGR2,FAM13C,JMJD1C,LRRTM3,MRLN,NRBF2,PHYHIPL,REEP3,RHOBTB1,RTKN2,SLC16A9,TMEM26,ZNF365"
TCGA.AA.3982	10	60326582	61207771	302	-0.1032	NEUTRAL	NA	3	"BICC1,FAM13C,PHYHIPL"
TCGA.AA.A00D.01A	10	60380562	62671057	115	-0.3443	NEUTRAL	NA	9	"ANK3,BICC1,CCDC6,CDK1,FAM13C,MRLN,PHYHIPL,RHOBTB1,SLC16A9"
TCGA.AA.A02K.01A	10	60461773	88024417	1439	-0.191	NEUTRAL	NA	141	Too-Many
TCGA.AA.A01F.01A	10	60544744	94268444	1556	0.1181	NEUTRAL	NA	190	Too-Many
TCGA.G4.6625	10	61109729	135434550	25960	-0.1164	NEUTRAL	NA	482	Too-Many
TCGA.AA.3811	10	61149565	65827718	1628	-0.1373	NEUTRAL	NA	16	"ADO,ANK3,ARID5B,C10orf107,CCDC6,CDK1,EGR2,JMJD1C,MRLN,NRBF2,REEP3,RHOBTB1,RTKN2,SLC16A9,TMEM26,ZNF365"
TCGA.AA.3850	10	61204464	61922972	332	0.09615	NEUTRAL	NA	4	"ANK3,CCDC6,MRLN,SLC16A9"
TCGA.AA.3941	10	61204464	62010522	366	0.1812	NEUTRAL	NA	4	"ANK3,CCDC6,MRLN,SLC16A9"
TCGA.AA.3982	10	61208290	62292031	478	0.1705	NEUTRAL	NA	4	"ANK3,CCDC6,MRLN,SLC16A9"
TCGA.CA.5254	10	61322014	61751186	206	0.1869	NEUTRAL	NA	3	"CCDC6,MRLN,SLC16A9"
TCGA.AY.A69D	10	61727114	82533663	6837	0.0046	NEUTRAL	NA	126	Too-Many
TCGA.CA.5254	10	61754079	61959060	105	-0.1015	NEUTRAL	NA	1	ANK3
TCGA.A6.2686	10	61776869	135434550	25630	-0.0554	NEUTRAL	NA	478	Too-Many
TCGA.CA.5254	10	61960134	62896909	322	0.2384	NEUTRAL	NA	3	"ANK3,CDK1,RHOBTB1"
TCGA.AA.3850	10	61982047	62023033	16	0.12505	NEUTRAL	NA	1	ANK3
TCGA.AA.3941	10	62013423	62292031	116	-0.1833	NEUTRAL	NA	1	ANK3
TCGA.AA.3850	10	62035368	62389155	136	-0.42625	NEUTRAL	NA	1	ANK3
TCGA.D5.6536	10	62278811	81248583	6286	-0.005	NEUTRAL	NA	112	Too-Many
TCGA.AA.3982	10	62312499	62367975	16	0.18	NEUTRAL	NA	1	ANK3
TCGA.AA.3941	10	62312499	62390645	27	-0.1384	NEUTRAL	NA	1	ANK3
TCGA.AA.3982	10	62375045	62390257	10	-0.4067	NEUTRAL	NA	1	ANK3
TCGA.AA.3850	10	62390257	62835605	150	0.13145	NEUTRAL	NA	3	"ANK3,CDK1,RHOBTB1"
TCGA.AA.3982	10	62390645	62839168	151	0.233	NEUTRAL	NA	3	"ANK3,CDK1,RHOBTB1"
TCGA.AA.3941	10	62391790	62838862	149	0.2359	NEUTRAL	NA	3	"ANK3,CDK1,RHOBTB1"
TCGA.AG.3909.01A	10	62631218	64913292	65	-0.0933	NEUTRAL	NA	9	"ADO,ARID5B,C10orf107,EGR2,NRBF2,RHOBTB1,RTKN2,TMEM26,ZNF365"
TCGA.DM.A28M.01A	10	62631218	117221412	3916	-0.1163	NEUTRAL	NA	365	Too-Many
TCGA.AA.3939.01A	10	62645829	71391198	395	0.1201	NEUTRAL	NA	38	"ADO,ARID5B,ATOH7,C10orf107,C10orf35,CCAR1,CTNNA3,DDX21,DDX50,DNA2,DNAJC12,EGR2,HERC4,HK1,HKDC1,HNRNPH3,JMJD1C,KIAA1279,LRRTM3,MYPN,NEUROG3,NRBF2,PBLD,REEP3,RHOBTB1,RTKN2,RUFY2,SIRT1,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TMEM26,TSPAN15,VPS26A,ZNF365"
TCGA.AA.3982	10	62839320	63362544	156	-0.3679	NEUTRAL	NA	1	TMEM26
TCGA.CA.5254	10	62899400	64095404	380	-0.1129	NEUTRAL	NA	4	"ARID5B,C10orf107,RTKN2,TMEM26"
TCGA.AG.3731	10	62973486	112215561	15916	-0.3226	NEUTRAL	NA	336	Too-Many
TCGA.AA.A00D.01A	10	63188642	64966324	52	-0.0439	NEUTRAL	NA	9	"ADO,ARID5B,C10orf107,EGR2,JMJD1C,NRBF2,RTKN2,TMEM26,ZNF365"
TCGA.AA.3982	10	63365658	64460834	382	0.1007	NEUTRAL	NA	4	"ARID5B,C10orf107,RTKN2,ZNF365"
TCGA.AA.3941	10	63528521	64454880	327	0.0304	NEUTRAL	NA	3	"ARID5B,RTKN2,ZNF365"
TCGA.AA.3850	10	63529022	63993904	168	0.08565	NEUTRAL	NA	2	"ARID5B,RTKN2"
TCGA.AA.A00N.01A	10	64005690	64928145	27	-0.3586	NEUTRAL	NA	6	"ADO,EGR2,JMJD1C,NRBF2,RTKN2,ZNF365"
TCGA.CK.5914.01A	10	64022346	69902656	120	-0.0621	NEUTRAL	NA	13	"ADO,CTNNA3,DNAJC12,EGR2,HERC4,JMJD1C,LRRTM3,MYPN,NRBF2,REEP3,RTKN2,SIRT1,ZNF365"
TCGA.AA.3850	10	64022746	64160115	25	-0.20845	NEUTRAL	NA	2	"RTKN2,ZNF365"
TCGA.CA.5254	10	64095506	64205814	32	0.373	NEUTRAL	NA	1	ZNF365
TCGA.AG.4009.01A	10	64158431	64429928	11	0.1398	NEUTRAL	NA	1	ZNF365
TCGA.AA.3509.01A	10	64158431	70098213	143	-0.031	NEUTRAL	NA	15	"ADO,ATOH7,CTNNA3,DNAJC12,EGR2,HERC4,HNRNPH3,JMJD1C,LRRTM3,MYPN,NRBF2,PBLD,REEP3,SIRT1,ZNF365"
TCGA.AA.3850	10	64182063	64781225	259	-0.12635	NEUTRAL	NA	3	"ADO,EGR2,ZNF365"
TCGA.CA.5254	10	64206711	64805234	251	-0.1423	NEUTRAL	NA	3	"ADO,EGR2,ZNF365"
TCGA.AA.3941	10	64461005	64657225	72	0.1839	NEUTRAL	NA	2	"ADO,EGR2"
TCGA.AA.3982	10	64461272	65875490	435	0.1997	NEUTRAL	NA	5	"ADO,EGR2,JMJD1C,NRBF2,REEP3"
TCGA.AG.A020	10	64592804	67935470	1095	-0.2083	NEUTRAL	NA	4	"CTNNA3,JMJD1C,NRBF2,REEP3"
TCGA.CA.5254	10	64812130	65524122	142	0.228	NEUTRAL	NA	3	"JMJD1C,NRBF2,REEP3"
TCGA.AG.4009.01A	10	64893169	69597644	62	-0.0535	NEUTRAL	NA	6	"CTNNA3,DNAJC12,JMJD1C,LRRTM3,NRBF2,REEP3"
TCGA.AF.3914.01A	10	64905914	75559767	806	-0.006	NEUTRAL	NA	80	"ADAMTS14,AGAP5,AIFM2,ANAPC16,ANXA7,ASCC1,ATOH7,C10orf105,C10orf35,C10orf54,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,CTNNA3,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC12,DNAJC9,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,JMJD1C,KIAA1279,LRRC20,LRRTM3,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NEUROG3,NODAL,NPFFR1,NRBF2,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PPA1,PPP3CB,PRF1,PSAP,REEP3,RUFY2,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VPS26A,ZSWIM8"
TCGA.AZ.4684.01A	10	64937429	70100930	124	-0.1324	NEUTRAL	NA	11	"ATOH7,CTNNA3,DNAJC12,HERC4,HNRNPH3,JMJD1C,LRRTM3,MYPN,PBLD,REEP3,SIRT1"
TCGA.BM.6198	10	64998970	65124788	24	-0.41345	NEUTRAL	NA	1	JMJD1C
TCGA.BM.6198	10	65140439	88946888	8032	0.05085	NEUTRAL	NA	135	Too-Many
TCGA.AG.3909.01A	10	65225208	69990928	85	0.0092	NEUTRAL	NA	9	"ATOH7,CTNNA3,DNAJC12,HERC4,JMJD1C,LRRTM3,MYPN,REEP3,SIRT1"
TCGA.AA.3850	10	65245501	65827718	210	-0.00845	NEUTRAL	NA	1	REEP3
TCGA.5M.AAT4	10	65333945	135434550	24500	0.1045	NEUTRAL	NA	466	Too-Many
TCGA.CL.4957	10	65393736	81077884	5255	-0.0021	NEUTRAL	NA	97	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,ATOH7,C10orf105,C10orf11,C10orf35,C10orf54,C10orf55,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,COMTD1,CTNNA3,DDIT4,DDX21,DDX50,DLG5,DNA2,DNAJB12,DNAJC12,DNAJC9,DUPD1,DUSP13,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KAT6B,KCNMA1,KIAA1279,LRRC20,LRRTM3,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PLAU,POLR3A,PPA1,PPP3CB,PRF1,PSAP,RPS24,RUFY2,SAMD8,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VCL,VDAC2,VPS26A,ZMIZ1,ZNF503,ZSWIM8"
TCGA.DM.A1DB	10	65409181	65484482	28	0.0363	NEUTRAL	NA	0	None
TCGA.AA.3941	10	65439142	65754196	145	0.0584	NEUTRAL	NA	0	None
TCGA.D5.5538	10	65512338	77636049	3642	-0.0133	NEUTRAL	NA	92	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,ATOH7,C10orf105,C10orf11,C10orf35,C10orf54,C10orf55,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,COMTD1,CTNNA3,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC12,DNAJC9,DUPD1,DUSP13,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KAT6B,KIAA1279,LRRC20,LRRTM3,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,RUFY2,SAMD8,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VCL,VDAC2,VPS26A,ZNF503,ZSWIM8"
TCGA.CA.5254	10	65537100	67007947	500	-0.1416	NEUTRAL	NA	0	None
TCGA.DM.A1HA	10	65610952	66934763	451	0.067	NEUTRAL	NA	0	None
TCGA.G4.6626	10	65713190	77411623	3492	-0.0429	NEUTRAL	NA	92	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,ATOH7,C10orf105,C10orf11,C10orf35,C10orf54,C10orf55,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,COMTD1,CTNNA3,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC12,DNAJC9,DUPD1,DUSP13,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KAT6B,KIAA1279,LRRC20,LRRTM3,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,RUFY2,SAMD8,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VCL,VDAC2,VPS26A,ZNF503,ZSWIM8"
TCGA.AA.3941	10	65772452	65826698	23	0.2617	NEUTRAL	NA	0	None
TCGA.AA.3941	10	65827718	69467039	1254	-0.5065	NEUTRAL	NA	2	"CTNNA3,LRRTM3"
TCGA.AA.3811	10	65833743	69350562	1234	-0.5141	NEUTRAL	NA	2	"CTNNA3,LRRTM3"
TCGA.DM.A1DB	10	65875490	135434550	24288	-0.0071	NEUTRAL	NA	465	Too-Many
TCGA.AA.3982	10	65892070	69493777	1237	-0.2388	NEUTRAL	NA	2	"CTNNA3,LRRTM3"
TCGA.DM.A0XD	10	65961281	135434550	24178	-0.0179	NEUTRAL	NA	465	Too-Many
TCGA.A6.5666	10	66103068	135434550	24217	-0.1517	NEUTRAL	NA	465	Too-Many
TCGA.AA.3517	10	66143863	135434550	24209	0.0052	NEUTRAL	NA	465	Too-Many
TCGA.D5.6922	10	66228023	67703870	527	0.3323	NEUTRAL	NA	1	CTNNA3
TCGA.EF.5830	10	66242582	81075974	4950	0.0208	NEUTRAL	NA	97	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,ATOH7,C10orf105,C10orf11,C10orf35,C10orf54,C10orf55,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,COMTD1,CTNNA3,DDIT4,DDX21,DDX50,DLG5,DNA2,DNAJB12,DNAJC12,DNAJC9,DUPD1,DUSP13,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KAT6B,KCNMA1,KIAA1279,LRRC20,LRRTM3,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PLAU,POLR3A,PPA1,PPP3CB,PRF1,PSAP,RPS24,RUFY2,SAMD8,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VCL,VDAC2,VPS26A,ZMIZ1,ZNF503,ZSWIM8"
TCGA.AA.3666	10	66282642	67974994	631	0.0074	NEUTRAL	NA	1	CTNNA3
TCGA.AA.3812	10	66605612	67852481	473	-0.3546	NEUTRAL	NA	1	CTNNA3
TCGA.AZ.4323	10	66729280	135434550	23956	-0.0399	NEUTRAL	NA	465	Too-Many
TCGA.F4.6460	10	66865764	66903681	9	-0.5031	NEUTRAL	NA	0	None
TCGA.F4.6460	10	66904086	135434550	24004	-0.0353	NEUTRAL	NA	465	Too-Many
TCGA.EI.7002	10	66952855	68788296	743	0.3479	NEUTRAL	NA	2	"CTNNA3,LRRTM3"
TCGA.CA.5254	10	67008047	67279571	98	0.2314	NEUTRAL	NA	0	None
TCGA.CA.5254	10	67281039	67408174	37	-0.1751	NEUTRAL	NA	0	None
TCGA.CA.5254	10	67408975	67935470	226	0.2491	NEUTRAL	NA	1	CTNNA3
TCGA.AA.3850	10	67461626	69493777	754	-0.50805	NEUTRAL	NA	2	"CTNNA3,LRRTM3"
TCGA.D5.6922	10	67704056	69692988	661	0.0522	NEUTRAL	NA	5	"CTNNA3,DNAJC12,HERC4,LRRTM3,SIRT1"
TCGA.AA.3812	10	67854219	135434550	23624	-0.004	NEUTRAL	NA	465	Too-Many
TCGA.AG.3881	10	67859564	76089181	2465	0.0908	NEUTRAL	NA	84	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,ATOH7,C10orf105,C10orf35,C10orf54,C10orf55,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,CTNNA3,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC12,DNAJC9,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,LRRC20,LRRTM3,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,RUFY2,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VCL,VPS26A,ZSWIM8"
TCGA.AG.A020	10	67935880	67958827	5	0.3	NEUTRAL	NA	1	CTNNA3
TCGA.CA.5254	10	67996866	69523325	511	0.227	NEUTRAL	NA	2	"CTNNA3,LRRTM3"
TCGA.G4.6317	10	68370044	79709724	3515	-0.3222	NEUTRAL	NA	94	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,ATOH7,C10orf105,C10orf11,C10orf35,C10orf54,C10orf55,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,COMTD1,CTNNA3,DDIT4,DDX21,DDX50,DLG5,DNA2,DNAJB12,DNAJC12,DNAJC9,DUPD1,DUSP13,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KAT6B,KCNMA1,KIAA1279,LRRC20,LRRTM3,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,RUFY2,SAMD8,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VCL,VDAC2,VPS26A,ZNF503,ZSWIM8"
TCGA.AA.A00D.01A	10	68686247	69969996	63	-0.0013	NEUTRAL	NA	6	"CTNNA3,DNAJC12,HERC4,LRRTM3,MYPN,SIRT1"
TCGA.EI.7002	10	68825283	68828931	5	0.3309	NEUTRAL	NA	2	"CTNNA3,LRRTM3"
TCGA.EI.7002	10	68835221	135434550	23185	-0.4681	NEUTRAL	NA	465	Too-Many
TCGA.D5.6535	10	68917163	75596013	1949	-0.0039	NEUTRAL	NA	78	"ADAMTS14,AGAP5,AIFM2,ANAPC16,ANXA7,ASCC1,ATOH7,C10orf105,C10orf35,C10orf54,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,CTNNA3,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC12,DNAJC9,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PPA1,PPP3CB,PRF1,PSAP,RUFY2,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VPS26A,ZSWIM8"
TCGA.AG.A011.01A	10	69281551	69700686	24	-0.3558	NEUTRAL	NA	4	"CTNNA3,DNAJC12,HERC4,SIRT1"
TCGA.AA.3811	10	69352465	82568040	4230	0.1166	NEUTRAL	NA	112	Too-Many
TCGA.AA.3844	10	69418269	71344586	459	0.1699	NEUTRAL	NA	25	"ATOH7,CCAR1,CTNNA3,DDX21,DDX50,DNA2,DNAJC12,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,MYPN,NEUROG3,PBLD,RUFY2,SIRT1,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TSPAN15,VPS26A"
TCGA.AA.3850	10	69523325	76146244	1914	0.35525	NEUTRAL	NA	82	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,ATOH7,C10orf105,C10orf35,C10orf54,C10orf55,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC12,DNAJC9,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,RUFY2,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VCL,VPS26A,ZSWIM8"
TCGA.CA.5254	10	69523361	71102648	357	-0.1375	NEUTRAL	NA	21	"ATOH7,CCAR1,DDX21,DDX50,DNA2,DNAJC12,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,MYPN,PBLD,RUFY2,SIRT1,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,VPS26A"
TCGA.AG.3891.01A	10	69556835	81275001	1001	0.0974	NEUTRAL	NA	98	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,ATOH7,C10orf105,C10orf11,C10orf35,C10orf54,C10orf55,CAMK2G,CCAR1,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,COMTD1,DDIT4,DDX21,DDX50,DLG5,DNA2,DNAJB12,DNAJC12,DNAJC9,DUPD1,DUSP13,ECD,EIF4EBP2,EIF5AL1,FAM149B1,FUT11,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KAT6B,KCNMA1,KIAA1279,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,MYPN,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PLAU,POLR3A,PPA1,PPIF,PPP3CB,PRF1,PSAP,RPS24,RUFY2,SAMD8,SAR1A,SEC24C,SGPL1,SIRT1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VCL,VDAC2,VPS26A,ZCCHC24,ZMIZ1,ZNF503,ZSWIM8"
TCGA.AA.A00F.01A	10	69647127	69651113	3	0.2726	NEUTRAL	NA	1	SIRT1
TCGA.AA.3862.01A	10	69666520	70546256	139	0.1019	NEUTRAL	NA	11	"ATOH7,CCAR1,DNA2,HERC4,HNRNPH3,MYPN,PBLD,RUFY2,SIRT1,SLC25A16,TET1"
TCGA.AA.A00F.01A	10	69666520	70715928	122	-0.194	NEUTRAL	NA	14	"ATOH7,CCAR1,DDX21,DDX50,DNA2,HERC4,HNRNPH3,MYPN,PBLD,RUFY2,SIRT1,SLC25A16,STOX1,TET1"
TCGA.AG.4009.01A	10	69667742	69969996	46	-0.0264	NEUTRAL	NA	3	"HERC4,MYPN,SIRT1"
TCGA.AG.A011.01A	10	69714315	70360663	95	0.1201	NEUTRAL	NA	9	"ATOH7,DNA2,HERC4,HNRNPH3,MYPN,PBLD,RUFY2,SLC25A16,TET1"
TCGA.D5.6922	10	69720739	72774907	1139	-0.3963	NEUTRAL	NA	39	"ADAMTS14,AIFM2,ATOH7,C10orf35,CCAR1,COL13A1,DDX21,DDX50,DNA2,EIF4EBP2,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,LRRC20,MYPN,NEUROG3,NODAL,NPFFR1,PALD1,PBLD,PCBD1,PPA1,PRF1,RUFY2,SAR1A,SGPL1,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TBATA,TET1,TSPAN15,TYSND1,VPS26A"
TCGA.AA.A00K.01A	10	69797832	71103535	166	0.3104	NEUTRAL	NA	19	"ATOH7,CCAR1,DDX21,DDX50,DNA2,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,MYPN,PBLD,RUFY2,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,VPS26A"
TCGA.AG.3598	10	69975032	70028051	25	0.349	NEUTRAL	NA	1	ATOH7
TCGA.AA.A00D.01A	10	69990928	71060532	143	0.34	NEUTRAL	NA	17	"ATOH7,CCAR1,DDX21,DDX50,DNA2,HK1,HKDC1,HNRNPH3,KIAA1279,PBLD,RUFY2,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,VPS26A"
TCGA.AG.A00Y.01A	10	69990928	75490917	630	0.2366	NEUTRAL	NA	67	"ADAMTS14,AGAP5,AIFM2,ANAPC16,ANXA7,ASCC1,ATOH7,C10orf105,C10orf35,C10orf54,CCAR1,CDH23,CFAP70,CHST3,COL13A1,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC9,ECD,EIF4EBP2,FAM149B1,H2AFY2,HK1,HKDC1,HNRNPH3,KIAA1279,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PBLD,PCBD1,PLA2G12B,PPA1,PPP3CB,PRF1,PSAP,RUFY2,SAR1A,SGPL1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VPS26A"
TCGA.AG.A00C.01A	10	70043887	70360663	59	0.2879	NEUTRAL	NA	6	"DNA2,HNRNPH3,PBLD,RUFY2,SLC25A16,TET1"
TCGA.AG.3909.01A	10	70043887	70502134	73	-0.2742	NEUTRAL	NA	7	"CCAR1,DNA2,HNRNPH3,PBLD,RUFY2,SLC25A16,TET1"
TCGA.AA.A00L.01A	10	70051691	70515983	43	0.2519	NEUTRAL	NA	7	"CCAR1,DNA2,HNRNPH3,PBLD,RUFY2,SLC25A16,TET1"
TCGA.AG.4009.01A	10	70056621	70153665	21	-0.0682	NEUTRAL	NA	3	"HNRNPH3,PBLD,RUFY2"
TCGA.AA.A010.01A	10	70066463	70143508	17	0.0482	NEUTRAL	NA	3	"HNRNPH3,PBLD,RUFY2"
TCGA.AF.2691	10	70088624	70405854	45	-0.4396	NEUTRAL	NA	6	"DNA2,HNRNPH3,PBLD,RUFY2,SLC25A16,TET1"
TCGA.AA.A00N.01A	10	70115038	70145764	9	0.069	NEUTRAL	NA	1	RUFY2
TCGA.AG.4009.01A	10	70174729	71151834	159	0.0913	NEUTRAL	NA	13	"CCAR1,DDX21,DDX50,DNA2,HK1,HKDC1,KIAA1279,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,VPS26A"
TCGA.AA.A010.01A	10	70179508	70204626	8	-0.4202	NEUTRAL	NA	1	DNA2
TCGA.CK.5914.01A	10	70179508	71631882	186	-0.139	NEUTRAL	NA	18	"C10orf35,CCAR1,COL13A1,DDX21,DDX50,DNA2,HK1,HKDC1,KIAA1279,NEUROG3,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TSPAN15,VPS26A"
TCGA.AA.3967.01A	10	70252826	71175686	146	0.1157	NEUTRAL	NA	13	"CCAR1,DDX21,DDX50,HK1,HKDC1,KIAA1279,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,VPS26A"
TCGA.AG.3906.01A	10	70253155	75457268	585	-0.0035	NEUTRAL	NA	62	"ADAMTS14,AGAP5,AIFM2,ANAPC16,ANXA7,ASCC1,C10orf105,C10orf35,C10orf54,CCAR1,CDH23,CFAP70,CHST3,COL13A1,DDIT4,DDX21,DDX50,DNAJB12,DNAJC9,ECD,EIF4EBP2,FAM149B1,H2AFY2,HK1,HKDC1,KIAA1279,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PCBD1,PLA2G12B,PPA1,PPP3CB,PRF1,PSAP,SAR1A,SGPL1,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TET1,TSPAN15,TYSND1,UNC5B,USP54,VPS26A"
TCGA.F4.6461	10	70391734	71000973	152	-0.2617	NEUTRAL	NA	10	"CCAR1,DDX21,DDX50,HKDC1,KIAA1279,SRGN,STOX1,SUPV3L1,TET1,VPS26A"
TCGA.AG.A00C.01A	10	70404408	70550895	31	0.0375	NEUTRAL	NA	2	"CCAR1,TET1"
TCGA.AG.A011.01A	10	70404408	135440021	4271	-0.2882	NEUTRAL	NA	454	Too-Many
TCGA.AF.2691	10	70405900	135434550	22865	0.0154	NEUTRAL	NA	453	Too-Many
TCGA.AA.A00N.01A	10	70502134	70549445	17	0.3088	NEUTRAL	NA	1	CCAR1
TCGA.AG.3909.01A	10	70506910	70550895	17	0.1701	NEUTRAL	NA	1	CCAR1
TCGA.AA.3509.01A	10	70545833	86018212	1076	-0.096	NEUTRAL	NA	107	Too-Many
TCGA.AA.A01T	10	70565775	78440186	2357	0.0745	NEUTRAL	NA	78	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf105,C10orf11,C10orf35,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,COMTD1,DDIT4,DDX21,DDX50,DNAJB12,DNAJC9,DUPD1,DUSP13,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HK1,HKDC1,KAT6B,KIAA1279,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,SAMD8,SAR1A,SEC24C,SGPL1,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,SYNPO2L,TACR2,TBATA,TSPAN15,TYSND1,UNC5B,USP54,VCL,VDAC2,VPS26A,ZNF503,ZSWIM8"
TCGA.AG.3598	10	70608910	70616516	5	-0.5054	NEUTRAL	NA	1	STOX1
TCGA.AG.3909.01A	10	70641667	70661093	5	-0.2022	NEUTRAL	NA	2	"DDX50,STOX1"
TCGA.AZ.4684.01A	10	70641667	86018212	1071	-0.208	NEUTRAL	NA	106	Too-Many
TCGA.AA.A00L.01A	10	70643979	94297086	1281	0.0632	NEUTRAL	NA	157	Too-Many
TCGA.AG.3909.01A	10	70679541	70715928	9	-0.2571	NEUTRAL	NA	2	"DDX21,DDX50"
TCGA.AA.3861.01A	10	70695701	71582069	110	-0.0255	NEUTRAL	NA	13	"C10orf35,COL13A1,DDX21,DDX50,HK1,HKDC1,KIAA1279,NEUROG3,SRGN,SUPV3L1,TACR2,TSPAN15,VPS26A"
TCGA.AA.3862.01A	10	70695701	71582069	111	0.0921	NEUTRAL	NA	13	"C10orf35,COL13A1,DDX21,DDX50,HK1,HKDC1,KIAA1279,NEUROG3,SRGN,SUPV3L1,TACR2,TSPAN15,VPS26A"
TCGA.AA.A00F.01A	10	70719540	70734362	10	0.1765	NEUTRAL	NA	1	DDX21
TCGA.AA.A00F.01A	10	70737234	72543019	188	-0.1813	NEUTRAL	NA	25	"ADAMTS14,AIFM2,C10orf35,COL13A1,DDX21,EIF4EBP2,H2AFY2,HK1,HKDC1,KIAA1279,LRRC20,NEUROG3,NODAL,NPFFR1,PALD1,PPA1,PRF1,SAR1A,SRGN,SUPV3L1,TACR2,TBATA,TSPAN15,TYSND1,VPS26A"
TCGA.AA.A00N.01A	10	70742291	70770617	7	-0.493	NEUTRAL	NA	2	"DDX21,KIAA1279"
TCGA.AG.3909.01A	10	70764745	71026335	48	-0.4202	NEUTRAL	NA	5	"HKDC1,KIAA1279,SRGN,SUPV3L1,VPS26A"
TCGA.AA.A00N.01A	10	70775293	71631882	89	0.0381	NEUTRAL	NA	11	"C10orf35,COL13A1,HK1,HKDC1,KIAA1279,NEUROG3,SRGN,SUPV3L1,TACR2,TSPAN15,VPS26A"
TCGA.AG.A00C.01A	10	70915506	71562153	74	-0.0103	NEUTRAL	NA	9	"C10orf35,COL13A1,HK1,HKDC1,NEUROG3,SUPV3L1,TACR2,TSPAN15,VPS26A"
TCGA.A6.3808.01A	10	70980122	88123650	1029	0.0837	NEUTRAL	NA	101	Too-Many
TCGA.AG.A01L.01A	10	70998749	75490917	466	-0.0777	NEUTRAL	NA	52	"ADAMTS14,AGAP5,AIFM2,ANAPC16,ANXA7,ASCC1,C10orf105,C10orf35,C10orf54,CDH23,CFAP70,CHST3,COL13A1,DDIT4,DNAJB12,DNAJC9,ECD,EIF4EBP2,FAM149B1,H2AFY2,HK1,HKDC1,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PCBD1,PLA2G12B,PPA1,PPP3CB,PRF1,PSAP,SAR1A,SGPL1,SLC29A3,SPOCK2,SYNPO2L,TACR2,TBATA,TSPAN15,TYSND1,UNC5B,USP54"
TCGA.AG.A02G.01A	10	70998749	75560743	495	-0.0915	NEUTRAL	NA	56	"ADAMTS14,AGAP5,AIFM2,ANAPC16,ANXA7,ASCC1,C10orf105,C10orf35,C10orf54,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,DDIT4,DNAJB12,DNAJC9,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,HK1,HKDC1,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,NEUROG3,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PCBD1,PLA2G12B,PPA1,PPP3CB,PRF1,PSAP,SAR1A,SEC24C,SGPL1,SLC29A3,SPOCK2,SYNPO2L,TACR2,TBATA,TSPAN15,TYSND1,UNC5B,USP54,ZSWIM8"
TCGA.F4.6461	10	71006850	71641239	329	-0.0431	NEUTRAL	NA	7	"C10orf35,COL13A1,HK1,HKDC1,NEUROG3,TACR2,TSPAN15"
TCGA.AG.3909.01A	10	71048422	71144504	14	0.0902	NEUTRAL	NA	1	HK1
TCGA.AA.A01Q.01A	10	71075644	72462030	108	0.2682	NEUTRAL	NA	18	"ADAMTS14,AIFM2,C10orf35,COL13A1,EIF4EBP2,H2AFY2,HK1,LRRC20,NEUROG3,NODAL,NPFFR1,PALD1,PPA1,PRF1,SAR1A,TACR2,TSPAN15,TYSND1"
TCGA.AA.A00D.01A	10	71075644	72576534	127	-0.0063	NEUTRAL	NA	20	"ADAMTS14,AIFM2,C10orf35,COL13A1,EIF4EBP2,H2AFY2,HK1,LRRC20,NEUROG3,NODAL,NPFFR1,PALD1,PPA1,PRF1,SAR1A,SGPL1,TACR2,TBATA,TSPAN15,TYSND1"
TCGA.AM.5820	10	71102648	71722850	361	0.3175	NEUTRAL	NA	6	"C10orf35,COL13A1,HK1,NEUROG3,TACR2,TSPAN15"
TCGA.CA.5254	10	71106453	71322000	82	0.2389	NEUTRAL	NA	3	"HK1,TACR2,TSPAN15"
TCGA.AA.A00K.01A	10	71119646	135373539	3859	0.0193	NEUTRAL	NA	443	Too-Many
TCGA.AG.4009.01A	10	71154655	71175686	7	-0.4321	NEUTRAL	NA	2	"HK1,TACR2"
TCGA.AG.4009.01A	10	71243396	71877531	54	0.2788	NEUTRAL	NA	6	"AIFM2,C10orf35,COL13A1,H2AFY2,NEUROG3,TSPAN15"
TCGA.AG.3909.01A	10	71243396	71883615	61	0.3014	NEUTRAL	NA	6	"AIFM2,C10orf35,COL13A1,H2AFY2,NEUROG3,TSPAN15"
TCGA.AA.3967.01A	10	71243396	73082485	175	-0.1471	NEUTRAL	NA	21	"ADAMTS14,AIFM2,C10orf35,COL13A1,EIF4EBP2,H2AFY2,LRRC20,NEUROG3,NODAL,NPFFR1,PALD1,PCBD1,PPA1,PRF1,SAR1A,SGPL1,SLC29A3,TBATA,TSPAN15,TYSND1,UNC5B"
TCGA.CA.5254	10	71324930	71814831	297	-0.1827	NEUTRAL	NA	4	"C10orf35,COL13A1,H2AFY2,NEUROG3"
TCGA.AA.3941	10	71343729	71393024	28	-0.0531	NEUTRAL	NA	1	C10orf35
TCGA.AA.3982	10	71345938	71363144	8	-0.4846	NEUTRAL	NA	0	None
TCGA.AA.3530	10	71367697	71416694	29	-0.0028	NEUTRAL	NA	1	C10orf35
TCGA.AA.3844	10	71367697	75999168	1438	0.1766	NEUTRAL	NA	58	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf105,C10orf35,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,DDIT4,DNAJB12,DNAJC9,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,SAR1A,SEC24C,SGPL1,SLC29A3,SPOCK2,SYNPO2L,TBATA,TYSND1,UNC5B,USP54,VCL,ZSWIM8"
TCGA.AA.3530	10	71417393	72832720	701	0.294	NEUTRAL	NA	16	"ADAMTS14,AIFM2,COL13A1,EIF4EBP2,H2AFY2,LRRC20,NODAL,NPFFR1,PALD1,PCBD1,PPA1,PRF1,SAR1A,SGPL1,TBATA,TYSND1"
TCGA.AG.A00C.01A	10	71582069	71683487	19	-0.4832	NEUTRAL	NA	1	COL13A1
TCGA.AA.3939.01A	10	71582069	73576086	251	0.0551	NEUTRAL	NA	22	"ADAMTS14,AIFM2,C10orf105,C10orf54,CDH23,COL13A1,EIF4EBP2,H2AFY2,LRRC20,NODAL,NPFFR1,PALD1,PCBD1,PPA1,PRF1,PSAP,SAR1A,SGPL1,SLC29A3,TBATA,TYSND1,UNC5B"
TCGA.F4.6461	10	71647168	89103047	5874	-0.0364	NEUTRAL	NA	107	Too-Many
TCGA.AA.3989	10	71679276	82903467	3640	0.0719	NEUTRAL	NA	86	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA11,ANXA7,AP3M1,ASCC1,C10orf105,C10orf11,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,COMTD1,DDIT4,DLG5,DNAJB12,DNAJC9,DUPD1,DUSP13,DYDC1,DYDC2,ECD,EIF4EBP2,EIF5AL1,FAM149B1,FAM213A,FUT11,H2AFY2,KAT6B,KCNMA1,LRRC20,MAT1A,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NODAL,NPFFR1,NUDT13,NUTM2B,OIT3,P4HA1,PALD1,PCBD1,PLA2G12B,PLAC9,PLAU,POLR3A,PPA1,PPIF,PPP3CB,PRF1,PSAP,RPS24,SAMD8,SAR1A,SEC24C,SFTPA1,SFTPA2,SFTPD,SGPL1,SH2D4B,SLC29A3,SPOCK2,SYNPO2L,TBATA,TMEM254,TSPAN14,TYSND1,UNC5B,USP54,VCL,VDAC2,ZCCHC24,ZMIZ1,ZNF503,ZSWIM8"
TCGA.AG.A00C.01A	10	71684642	71880821	30	-0.1122	NEUTRAL	NA	3	"AIFM2,COL13A1,H2AFY2"
TCGA.CK.5914.01A	10	71692241	71902393	29	0.1095	NEUTRAL	NA	4	"AIFM2,COL13A1,H2AFY2,TYSND1"
TCGA.AM.5820	10	71729392	71856630	37	-0.1113	NEUTRAL	NA	1	H2AFY2
TCGA.CA.5254	10	71816498	72673606	355	0.209	NEUTRAL	NA	15	"ADAMTS14,AIFM2,EIF4EBP2,H2AFY2,LRRC20,NODAL,NPFFR1,PALD1,PCBD1,PPA1,PRF1,SAR1A,SGPL1,TBATA,TYSND1"
TCGA.AA.3862.01A	10	71835378	88485846	970	-0.0676	NEUTRAL	NA	97	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA11,ANXA7,AP3M1,ASCC1,C10orf105,C10orf11,C10orf54,C10orf55,C10orf99,CAMK2G,CCSER2,CDH23,CDHR1,CFAP70,CHCHD1,CHST3,COMTD1,DDIT4,DLG5,DNAJB12,DNAJC9,DUPD1,DUSP13,DYDC1,DYDC2,ECD,EIF4EBP2,EIF5AL1,FAM149B1,FAM213A,FUT11,GHITM,GRID1,H2AFY2,KAT6B,KCNMA1,LDB3,LRIT1,LRIT2,LRRC20,MAT1A,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NODAL,NPFFR1,NRG3,NUDT13,NUTM2B,OIT3,OPN4,P4HA1,PALD1,PCBD1,PLA2G12B,PLAC9,PLAU,POLR3A,PPA1,PPIF,PPP3CB,PRF1,PSAP,RGR,RPS24,SAMD8,SAR1A,SEC24C,SFTPA1,SFTPA2,SFTPD,SGPL1,SH2D4B,SLC29A3,SPOCK2,SYNPO2L,TBATA,TMEM254,TSPAN14,TYSND1,UNC5B,USP54,VCL,VDAC2,WAPAL,ZCCHC24,ZMIZ1,ZNF503,ZSWIM8"
TCGA.AA.3861.01A	10	71835378	88835685	1002	-0.1472	NEUTRAL	NA	104	Too-Many
TCGA.AM.5820	10	71859865	71903016	21	0.3212	NEUTRAL	NA	3	"AIFM2,H2AFY2,TYSND1"
TCGA.AA.A00O.01A	10	71876338	135440021	3979	-0.0598	NEUTRAL	NA	437	Too-Many
TCGA.AA.A00N.01A	10	71880213	71899668	5	-0.1755	NEUTRAL	NA	2	"AIFM2,TYSND1"
TCGA.AG.4009.01A	10	71880213	72195021	36	-0.3224	NEUTRAL	NA	8	"AIFM2,EIF4EBP2,LRRC20,NODAL,NPFFR1,PPA1,SAR1A,TYSND1"
TCGA.AG.A00C.01A	10	71883112	72297517	44	0.1877	NEUTRAL	NA	9	"AIFM2,EIF4EBP2,LRRC20,NODAL,NPFFR1,PALD1,PPA1,SAR1A,TYSND1"
TCGA.AM.5820	10	71903994	72184187	107	-0.0375	NEUTRAL	NA	6	"EIF4EBP2,LRRC20,NPFFR1,PPA1,SAR1A,TYSND1"
TCGA.AA.A010.01A	10	71912195	72207597	32	-0.2436	NEUTRAL	NA	6	"EIF4EBP2,LRRC20,NODAL,NPFFR1,PPA1,SAR1A"
TCGA.AG.3909.01A	10	71962825	72136147	18	-0.3416	NEUTRAL	NA	3	"LRRC20,NPFFR1,PPA1"
TCGA.CK.5914.01A	10	71962825	72543019	76	0.0199	NEUTRAL	NA	9	"ADAMTS14,EIF4EBP2,LRRC20,NODAL,NPFFR1,PALD1,PPA1,PRF1,TBATA"
TCGA.DM.A1HA	10	72181459	73392781	552	0.0044	NEUTRAL	NA	11	"ADAMTS14,CDH23,EIF4EBP2,NODAL,PALD1,PCBD1,PRF1,SGPL1,SLC29A3,TBATA,UNC5B"
TCGA.AG.4009.01A	10	72285697	72360591	21	0.3558	NEUTRAL	NA	2	"PALD1,PRF1"
TCGA.AG.3909.01A	10	72285697	72543019	49	0.0349	NEUTRAL	NA	4	"ADAMTS14,PALD1,PRF1,TBATA"
TCGA.AG.A00C.01A	10	72298029	72539320	35	-0.2578	NEUTRAL	NA	4	"ADAMTS14,PALD1,PRF1,TBATA"
TCGA.F5.6812	10	72358576	135434550	22054	-0.3515	NEUTRAL	NA	427	Too-Many
TCGA.AM.5820	10	72363795	72407150	13	-0.2181	NEUTRAL	NA	0	None
TCGA.AM.5820	10	72409650	72566711	91	0.3699	NEUTRAL	NA	2	"ADAMTS14,TBATA"
TCGA.F4.6459	10	72443983	135434550	22072	-0.0527	NEUTRAL	NA	426	Too-Many
TCGA.AA.A01Q.01A	10	72468303	73847851	120	-5.00E-04	NEUTRAL	NA	12	"ADAMTS14,C10orf105,C10orf54,CDH23,CHST3,PCBD1,PSAP,SGPL1,SLC29A3,SPOCK2,TBATA,UNC5B"
TCGA.AG.4009.01A	10	72488990	72543019	25	0.3008	NEUTRAL	NA	2	"ADAMTS14,TBATA"
TCGA.AG.A00C.01A	10	72541506	73039526	20	0.3626	NEUTRAL	NA	4	"PCBD1,SGPL1,TBATA,UNC5B"
TCGA.AM.5820	10	72569769	72658037	24	-0.1352	NEUTRAL	NA	2	"PCBD1,SGPL1"
TCGA.AA.A00F.01A	10	72576534	72645517	17	0.1955	NEUTRAL	NA	2	"PCBD1,SGPL1"
TCGA.CA.5254	10	72675653	72989144	149	-0.156	NEUTRAL	NA	1	UNC5B
TCGA.D5.6922	10	72779821	73902504	469	0.2139	NEUTRAL	NA	9	"ASCC1,C10orf105,C10orf54,CDH23,CHST3,PSAP,SLC29A3,SPOCK2,UNC5B"
TCGA.AA.A01R	10	72832402	73195823	147	0.3542	NEUTRAL	NA	3	"CDH23,SLC29A3,UNC5B"
TCGA.AA.3530	10	72834912	72928130	41	-0.0456	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	10	72972695	73082485	18	-0.2302	NEUTRAL	NA	2	"SLC29A3,UNC5B"
TCGA.AA.A00N.01A	10	72972695	73515065	64	0.3556	NEUTRAL	NA	5	"C10orf105,C10orf54,CDH23,SLC29A3,UNC5B"
TCGA.CA.5254	10	72991094	73285362	126	0.1475	NEUTRAL	NA	3	"CDH23,SLC29A3,UNC5B"
TCGA.AG.3909.01A	10	73039526	73082485	16	0.0477	NEUTRAL	NA	2	"SLC29A3,UNC5B"
TCGA.AG.4009.01A	10	73039526	74034432	118	0.2221	NEUTRAL	NA	11	"ANAPC16,ASCC1,C10orf105,C10orf54,CDH23,CHST3,DDIT4,PSAP,SLC29A3,SPOCK2,UNC5B"
TCGA.AA.A00F.01A	10	73039526	75802790	271	-0.1708	NEUTRAL	NA	39	"AGAP5,ANAPC16,ANXA7,ASCC1,C10orf105,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,DDIT4,DNAJB12,DNAJC9,ECD,FAM149B1,FUT11,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,PPP3CB,PSAP,SEC24C,SLC29A3,SPOCK2,SYNPO2L,UNC5B,USP54,VCL,ZSWIM8"
TCGA.AA.A00D.01A	10	73039526	77806890	360	0.0459	NEUTRAL	NA	49	"ADK,AGAP5,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf105,C10orf11,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,COMTD1,DDIT4,DNAJB12,DNAJC9,DUPD1,DUSP13,ECD,FAM149B1,FUT11,KAT6B,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,PPP3CB,PSAP,SAMD8,SEC24C,SLC29A3,SPOCK2,SYNPO2L,UNC5B,USP54,VCL,VDAC2,ZNF503,ZSWIM8"
TCGA.AG.A00C.01A	10	73044436	75394210	272	-0.0512	NEUTRAL	NA	28	"ANAPC16,ANXA7,ASCC1,C10orf105,C10orf54,CDH23,CFAP70,CHST3,DDIT4,DNAJB12,DNAJC9,ECD,FAM149B1,MCU,MICU1,MRPS16,MSS51,MYOZ1,NUDT13,OIT3,P4HA1,PLA2G12B,PPP3CB,PSAP,SLC29A3,SPOCK2,UNC5B,USP54"
TCGA.AD.6889	10	73083044	135434550	21746	-0.0338	NEUTRAL	NA	421	Too-Many
TCGA.AA.A01R	10	73196120	73278912	32	-0.014	NEUTRAL	NA	1	CDH23
TCGA.CA.5254	10	73330453	74570912	325	0.261	NEUTRAL	NA	12	"ANAPC16,ASCC1,C10orf105,C10orf54,CDH23,CHST3,DDIT4,DNAJB12,MCU,MICU1,PSAP,SPOCK2"
TCGA.AG.3909.01A	10	73330499	73434825	7	0.0923	NEUTRAL	NA	1	CDH23
TCGA.CK.5914.01A	10	73330499	74103072	116	-0.1666	NEUTRAL	NA	10	"ANAPC16,ASCC1,C10orf105,C10orf54,CDH23,CHST3,DDIT4,DNAJB12,PSAP,SPOCK2"
TCGA.AA.3864	10	73431616	76126705	456	0.1988	NEUTRAL	NA	39	"ADK,AGAP5,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf105,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,DDIT4,DNAJB12,DNAJC9,ECD,FAM149B1,FUT11,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,PPP3CB,PSAP,SEC24C,SPOCK2,SYNPO2L,USP54,VCL,ZSWIM8"
TCGA.AG.3909.01A	10	73453857	74104681	92	-0.2346	NEUTRAL	NA	10	"ANAPC16,ASCC1,C10orf105,C10orf54,CDH23,CHST3,DDIT4,DNAJB12,PSAP,SPOCK2"
TCGA.AA.A00N.01A	10	73520567	74167646	84	-0.2852	NEUTRAL	NA	10	"ANAPC16,ASCC1,C10orf54,CDH23,CHST3,DDIT4,DNAJB12,MICU1,PSAP,SPOCK2"
TCGA.AA.3967.01A	10	73577149	92680684	949	-0.1717	NEUTRAL	NA	114	Too-Many
TCGA.AA.A00Q.01A	10	73578325	73767663	15	-0.1285	NEUTRAL	NA	2	"CHST3,PSAP"
TCGA.AA.3939.01A	10	73581596	81275001	549	0.0612	NEUTRAL	NA	52	"ADK,AGAP5,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf11,C10orf55,CAMK2G,CFAP70,CHCHD1,CHST3,COMTD1,DDIT4,DLG5,DNAJB12,DNAJC9,DUPD1,DUSP13,ECD,EIF5AL1,FAM149B1,FUT11,KAT6B,KCNMA1,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,POLR3A,PPIF,PPP3CB,PSAP,RPS24,SAMD8,SEC24C,SPOCK2,SYNPO2L,USP54,VCL,VDAC2,ZCCHC24,ZMIZ1,ZNF503,ZSWIM8"
TCGA.AM.5820	10	73600315	73833354	103	0.1997	NEUTRAL	NA	3	"CHST3,PSAP,SPOCK2"
TCGA.AG.4015	10	73626222	135434550	21454	-0.4625	NEUTRAL	NA	416	Too-Many
TCGA.AA.A00Q.01A	10	73831873	91468866	802	-0.1424	NEUTRAL	NA	109	Too-Many
TCGA.AM.5820	10	73858453	75406140	177	-0.1928	NEUTRAL	NA	21	"ANAPC16,ANXA7,ASCC1,CFAP70,DDIT4,DNAJB12,DNAJC9,ECD,FAM149B1,MCU,MICU1,MRPS16,MSS51,MYOZ1,NUDT13,OIT3,P4HA1,PLA2G12B,PPP3CB,SYNPO2L,USP54"
TCGA.D5.6922	10	73918057	77489935	558	-0.3583	NEUTRAL	NA	41	"ADK,AGAP5,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf11,C10orf55,CAMK2G,CFAP70,CHCHD1,COMTD1,DDIT4,DNAJB12,DNAJC9,DUPD1,DUSP13,ECD,FAM149B1,FUT11,KAT6B,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,PPP3CB,SAMD8,SEC24C,SYNPO2L,USP54,VCL,VDAC2,ZNF503,ZSWIM8"
TCGA.AA.A01Q.01A	10	74095521	74104681	6	-0.0894	NEUTRAL	NA	1	DNAJB12
TCGA.AG.4009.01A	10	74103072	74905980	62	-0.0349	NEUTRAL	NA	8	"DNAJB12,ECD,MCU,MICU1,NUDT13,OIT3,P4HA1,PLA2G12B"
TCGA.CK.5914.01A	10	74104681	74776559	39	0.3162	NEUTRAL	NA	6	"DNAJB12,MCU,MICU1,OIT3,P4HA1,PLA2G12B"
TCGA.AG.3909.01A	10	74114561	74767918	32	0.2538	NEUTRAL	NA	6	"DNAJB12,MCU,MICU1,OIT3,P4HA1,PLA2G12B"
TCGA.AA.3530	10	74141038	80802945	1994	0.0963	NEUTRAL	NA	41	"ADK,AGAP5,ANXA7,AP3M1,C10orf11,C10orf55,CAMK2G,CFAP70,CHCHD1,COMTD1,DLG5,DNAJC9,DUPD1,DUSP13,ECD,FAM149B1,FUT11,KAT6B,KCNMA1,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,POLR3A,PPP3CB,RPS24,SAMD8,SEC24C,SYNPO2L,USP54,VCL,VDAC2,ZNF503,ZSWIM8"
TCGA.AA.3968	10	74141038	135434550	21376	0.0147	NEUTRAL	NA	410	Too-Many
TCGA.G4.6299	10	74283056	78441431	880	-0.0564	NEUTRAL	NA	37	"ADK,AGAP5,ANXA7,AP3M1,C10orf11,C10orf55,CAMK2G,CFAP70,CHCHD1,COMTD1,DNAJC9,DUPD1,DUSP13,ECD,FAM149B1,FUT11,KAT6B,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,PPP3CB,SAMD8,SEC24C,SYNPO2L,USP54,VCL,VDAC2,ZNF503,ZSWIM8"
TCGA.AY.6196	10	74490022	85548651	3597	-0.4598	NEUTRAL	NA	58	"ADK,AGAP5,ANXA11,ANXA7,AP3M1,C10orf11,C10orf55,CAMK2G,CFAP70,CHCHD1,COMTD1,DLG5,DNAJC9,DUPD1,DUSP13,DYDC1,DYDC2,ECD,EIF5AL1,FAM149B1,FAM213A,FUT11,KAT6B,KCNMA1,MAT1A,MCU,MRPS16,MSS51,MYOZ1,NDST2,NRG3,NUDT13,NUTM2B,OIT3,P4HA1,PLA2G12B,PLAC9,PLAU,POLR3A,PPIF,PPP3CB,RPS24,SAMD8,SEC24C,SFTPA1,SFTPA2,SFTPD,SH2D4B,SYNPO2L,TMEM254,TSPAN14,USP54,VCL,VDAC2,ZCCHC24,ZMIZ1,ZNF503,ZSWIM8"
TCGA.DM.A285	10	74544246	75089777	59	0.3153	NEUTRAL	NA	10	"CFAP70,DNAJC9,ECD,FAM149B1,MCU,MRPS16,NUDT13,OIT3,P4HA1,PLA2G12B"
TCGA.CA.5254	10	74588109	74934313	36	-0.2224	NEUTRAL	NA	7	"ECD,FAM149B1,MCU,NUDT13,OIT3,P4HA1,PLA2G12B"
TCGA.A6.A56B	10	74661040	93462423	6309	-0.0141	NEUTRAL	NA	108	Too-Many
TCGA.AG.A01W.01A	10	74675718	75005230	81	0.2792	NEUTRAL	NA	7	"DNAJC9,ECD,FAM149B1,NUDT13,OIT3,P4HA1,PLA2G12B"
TCGA.AA.3544	10	74768464	135434550	21323	0	NEUTRAL	NA	406	Too-Many
TCGA.F5.6464	10	74768923	77143466	365	-0.0144	NEUTRAL	NA	31	"ADK,AGAP5,ANXA7,AP3M1,C10orf55,CAMK2G,CFAP70,CHCHD1,COMTD1,DNAJC9,DUPD1,DUSP13,ECD,FAM149B1,FUT11,KAT6B,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,P4HA1,PLAU,PPP3CB,SAMD8,SEC24C,SYNPO2L,USP54,VCL,VDAC2,ZSWIM8"
TCGA.AG.3909.01A	10	74769517	74913974	31	-0.1526	NEUTRAL	NA	3	"ECD,NUDT13,P4HA1"
TCGA.CK.5914.01A	10	74789973	74896445	20	0.0298	NEUTRAL	NA	3	"ECD,NUDT13,P4HA1"
TCGA.CK.5914.01A	10	74897693	74937572	13	-0.4124	NEUTRAL	NA	2	"ECD,FAM149B1"
TCGA.AA.A00N.01A	10	74899363	74937572	11	-0.4744	NEUTRAL	NA	2	"ECD,FAM149B1"
TCGA.CA.5254	10	74936309	75836118	112	0.2727	NEUTRAL	NA	20	"AGAP5,ANXA7,C10orf55,CAMK2G,CFAP70,CHCHD1,DNAJC9,FAM149B1,FUT11,MRPS16,MSS51,MYOZ1,NDST2,PLAU,PPP3CB,SEC24C,SYNPO2L,USP54,VCL,ZSWIM8"
TCGA.CK.5914.01A	10	74952262	74994910	9	0.1594	NEUTRAL	NA	1	FAM149B1
TCGA.AG.4009.01A	10	75003161	75227294	57	0.1058	NEUTRAL	NA	6	"ANXA7,CFAP70,DNAJC9,MRPS16,MSS51,PPP3CB"
TCGA.AG.3909.01A	10	75006721	75523566	99	-0.1748	NEUTRAL	NA	11	"AGAP5,ANXA7,CFAP70,DNAJC9,MRPS16,MSS51,MYOZ1,PPP3CB,SEC24C,SYNPO2L,USP54"
TCGA.AA.A00N.01A	10	75011493	75142901	32	0.2917	NEUTRAL	NA	3	"ANXA7,CFAP70,MRPS16"
TCGA.CK.5914.01A	10	75029325	75072183	15	0.1115	NEUTRAL	NA	1	CFAP70
TCGA.AG.A01W.01A	10	75061666	75078022	8	-0.4453	NEUTRAL	NA	1	CFAP70
TCGA.AG.A01W.01A	10	75080631	75127275	6	0.2332	NEUTRAL	NA	1	CFAP70
TCGA.CK.5914.01A	10	75138618	75335249	50	0.1382	NEUTRAL	NA	4	"ANXA7,MSS51,PPP3CB,USP54"
TCGA.AG.A01W.01A	10	75176551	75199996	15	-0.4864	NEUTRAL	NA	2	"MSS51,PPP3CB"
TCGA.AA.A00N.01A	10	75197968	75214153	6	0.3039	NEUTRAL	NA	1	PPP3CB
TCGA.AG.A01W.01A	10	75225282	75230740	8	0.0966	NEUTRAL	NA	1	PPP3CB
TCGA.AG.4009.01A	10	75230396	75239038	5	-0.2225	NEUTRAL	NA	1	PPP3CB
TCGA.AG.A01W.01A	10	75247184	75554094	47	0.2224	NEUTRAL	NA	9	"AGAP5,CHCHD1,FUT11,MYOZ1,PPP3CB,SEC24C,SYNPO2L,USP54,ZSWIM8"
TCGA.AG.4009.01A	10	75279503	75535252	48	-0.0622	NEUTRAL	NA	6	"AGAP5,FUT11,MYOZ1,SEC24C,SYNPO2L,USP54"
TCGA.AA.A00N.01A	10	75391638	75415529	12	-0.3363	NEUTRAL	NA	2	"MYOZ1,SYNPO2L"
TCGA.CK.5914.01A	10	75391638	75520434	21	-0.2504	NEUTRAL	NA	4	"AGAP5,MYOZ1,SEC24C,SYNPO2L"
TCGA.AG.A00C.01A	10	75397455	75520434	12	0.2906	NEUTRAL	NA	4	"AGAP5,MYOZ1,SEC24C,SYNPO2L"
TCGA.AM.5820	10	75409966	75693694	41	0.1997	NEUTRAL	NA	10	"AGAP5,C10orf55,CAMK2G,CHCHD1,FUT11,NDST2,PLAU,SEC24C,SYNPO2L,ZSWIM8"
TCGA.AG.3611.01A	10	75506550	75520434	5	-0.3397	NEUTRAL	NA	1	SEC24C
TCGA.AG.3611.01A	10	75523200	75558723	21	-0.0139	NEUTRAL	NA	4	"CHCHD1,FUT11,SEC24C,ZSWIM8"
TCGA.AA.A01Q.01A	10	75525526	75560743	27	0.1339	NEUTRAL	NA	4	"CHCHD1,FUT11,SEC24C,ZSWIM8"
TCGA.AG.A01L.01A	10	75532045	81072351	259	-0.1051	NEUTRAL	NA	23	"ADK,AP3M1,C10orf11,C10orf55,CAMK2G,CHCHD1,COMTD1,DLG5,DUPD1,DUSP13,FUT11,KAT6B,KCNMA1,NDST2,PLAU,POLR3A,RPS24,SAMD8,VCL,VDAC2,ZMIZ1,ZNF503,ZSWIM8"
TCGA.AG.A015.01A	10	75532961	98924515	1313	-0.1468	NEUTRAL	NA	137	Too-Many
TCGA.AG.3611.01A	10	75562161	75601851	20	0.2627	NEUTRAL	NA	2	"CAMK2G,NDST2"
TCGA.AG.A02G.01A	10	75566015	135440021	3667	-0.0866	NEUTRAL	NA	389	Too-Many
TCGA.D5.6535	10	75600650	75919689	65	-0.4303	NEUTRAL	NA	6	"ADK,AP3M1,C10orf55,CAMK2G,PLAU,VCL"
TCGA.AG.3611.01A	10	75602178	90122258	498	-0.1586	NEUTRAL	NA	62	"ADIRF,ADK,AGAP11,ANXA11,AP3M1,ATAD1,BMPR1A,C10orf11,C10orf55,C10orf99,CAMK2G,CCSER2,CDHR1,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,FAM25A,FAM35A,GHITM,GLUD1,GRID1,KAT6B,KCNMA1,KLLN,LDB3,LRIT1,LRIT2,MAT1A,MINPP1,MMRN2,NRG3,NUTM2A,NUTM2B,OPN4,PAPSS2,PLAC9,PLAU,POLR3A,PPIF,PTEN,RGR,RNLS,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,SH2D4B,SNCG,TMEM254,TSPAN14,VCL,VDAC2,WAPAL,ZCCHC24,ZMIZ1,ZNF503"
TCGA.AF.3914.01A	10	75607717	87966094	382	0.0479	NEUTRAL	NA	44	"ADK,ANXA11,AP3M1,C10orf11,C10orf55,C10orf99,CAMK2G,CCSER2,CDHR1,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,GHITM,GRID1,KAT6B,KCNMA1,LRIT1,LRIT2,MAT1A,NRG3,NUTM2B,PLAC9,PLAU,POLR3A,PPIF,RGR,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,VCL,VDAC2,ZCCHC24,ZMIZ1,ZNF503"
TCGA.AG.4009.01A	10	75608789	87966094	376	0.0299	NEUTRAL	NA	44	"ADK,ANXA11,AP3M1,C10orf11,C10orf55,C10orf99,CAMK2G,CCSER2,CDHR1,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,GHITM,GRID1,KAT6B,KCNMA1,LRIT1,LRIT2,MAT1A,NRG3,NUTM2B,PLAC9,PLAU,POLR3A,PPIF,RGR,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,VCL,VDAC2,ZCCHC24,ZMIZ1,ZNF503"
TCGA.AG.A00Y.01A	10	75620517	89481424	468	0.1718	NEUTRAL	NA	58	"ADIRF,ADK,AGAP11,ANXA11,AP3M1,BMPR1A,C10orf11,C10orf55,C10orf99,CAMK2G,CCSER2,CDHR1,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,FAM25A,FAM35A,GHITM,GLUD1,GRID1,KAT6B,KCNMA1,LDB3,LRIT1,LRIT2,MAT1A,MINPP1,MMRN2,NRG3,NUTM2A,NUTM2B,OPN4,PAPSS2,PLAC9,PLAU,POLR3A,PPIF,RGR,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,SH2D4B,SNCG,TMEM254,TSPAN14,VCL,VDAC2,WAPAL,ZCCHC24,ZMIZ1,ZNF503"
TCGA.AA.A01Q.01A	10	75634091	75676100	9	0.1802	NEUTRAL	NA	3	"C10orf55,CAMK2G,PLAU"
TCGA.AH.6897	10	75648055	78161870	644	-0.4299	NEUTRAL	NA	13	"ADK,AP3M1,C10orf11,C10orf55,COMTD1,DUPD1,DUSP13,KAT6B,PLAU,SAMD8,VCL,VDAC2,ZNF503"
TCGA.AA.A010.01A	10	75671243	79396986	142	0.107	NEUTRAL	NA	14	"ADK,AP3M1,C10orf11,C10orf55,COMTD1,DUPD1,DUSP13,KAT6B,KCNMA1,PLAU,SAMD8,VCL,VDAC2,ZNF503"
TCGA.AG.3906.01A	10	75673006	82180177	273	-0.0289	NEUTRAL	NA	32	"ADK,ANXA11,AP3M1,C10orf11,C10orf55,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,KAT6B,KCNMA1,MAT1A,NUTM2B,PLAC9,PLAU,POLR3A,PPIF,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,TMEM254,VCL,VDAC2,ZCCHC24,ZMIZ1,ZNF503"
TCGA.CK.5914.01A	10	75676100	75885869	26	0.1976	NEUTRAL	NA	4	"AP3M1,C10orf55,PLAU,VCL"
TCGA.AM.5820	10	75698120	76983257	223	-0.2274	NEUTRAL	NA	8	"ADK,AP3M1,DUPD1,DUSP13,KAT6B,SAMD8,VCL,VDAC2"
TCGA.DM.A1D9	10	75708905	76128831	68	0.1092	NEUTRAL	NA	3	"ADK,AP3M1,VCL"
TCGA.AG.3909.01A	10	75757919	75874501	21	0.25	NEUTRAL	NA	1	VCL
TCGA.AG.A00C.01A	10	75757919	76935774	71	-0.1018	NEUTRAL	NA	7	"ADK,AP3M1,DUPD1,DUSP13,KAT6B,SAMD8,VCL"
TCGA.AA.A017.01A	10	75866937	76797575	42	0.2377	NEUTRAL	NA	4	"ADK,AP3M1,KAT6B,VCL"
TCGA.AA.A00F.01A	10	75874501	75897887	10	-0.0401	NEUTRAL	NA	2	"AP3M1,VCL"
TCGA.AG.3909.01A	10	75877741	75885869	4	-0.3653	NEUTRAL	NA	2	"AP3M1,VCL"
TCGA.AA.A00F.01A	10	75910972	76970876	43	-0.3059	NEUTRAL	NA	6	"ADK,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2"
TCGA.AA.A00N.01A	10	75910972	76970876	45	0.2306	NEUTRAL	NA	6	"ADK,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2"
TCGA.D5.6535	10	75934508	83829869	2780	-0.0151	NEUTRAL	NA	31	"ADK,ANXA11,C10orf11,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,KAT6B,KCNMA1,MAT1A,NRG3,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,VDAC2,ZCCHC24,ZMIZ1,ZNF503"
TCGA.AG.3909.01A	10	75936561	76970876	43	-0.0243	NEUTRAL	NA	6	"ADK,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2"
TCGA.AA.3844	10	76015607	76400261	49	-0.3152	NEUTRAL	NA	1	ADK
TCGA.CK.5914.01A	10	76074368	76970876	41	0.1639	NEUTRAL	NA	6	"ADK,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2"
TCGA.CA.5254	10	76089122	76650941	85	0.245	NEUTRAL	NA	2	"ADK,KAT6B"
TCGA.AA.3864	10	76128831	76373110	30	-0.307	NEUTRAL	NA	1	ADK
TCGA.AA.3850	10	76149669	76373110	25	-0.36235	NEUTRAL	NA	1	ADK
TCGA.AA.3941	10	76149669	76373110	25	-0.3085	NEUTRAL	NA	1	ADK
TCGA.AA.3982	10	76149669	76373110	25	-0.0623	NEUTRAL	NA	1	ADK
TCGA.AA.3850	10	76377010	77268742	188	0.34565	NEUTRAL	NA	9	"ADK,C10orf11,COMTD1,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2,ZNF503"
TCGA.AA.3864	10	76377010	90183407	4907	0.0343	NEUTRAL	NA	57	"ADIRF,ADK,AGAP11,ANXA11,ATAD1,BMPR1A,C10orf11,C10orf99,CCSER2,CDHR1,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,FAM25A,FAM35A,GHITM,GLUD1,GRID1,KAT6B,KCNMA1,KLLN,LDB3,LRIT1,LRIT2,MAT1A,MINPP1,MMRN2,NRG3,NUTM2A,NUTM2B,OPN4,PAPSS2,PLAC9,POLR3A,PPIF,PTEN,RGR,RNLS,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,SH2D4B,SNCG,TMEM254,TSPAN14,VDAC2,WAPAL,ZCCHC24,ZMIZ1,ZNF503"
TCGA.AA.3844	10	76409068	77216726	168	0.1285	NEUTRAL	NA	9	"ADK,C10orf11,COMTD1,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2,ZNF503"
TCGA.AG.A01W.01A	10	76488033	76533619	6	-0.3213	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	10	76535418	76641928	10	0.2453	NEUTRAL	NA	1	KAT6B
TCGA.AG.A01W.01A	10	76643709	76659336	5	-0.243	NEUTRAL	NA	1	KAT6B
TCGA.CA.5254	10	76658149	77708977	284	-0.1509	NEUTRAL	NA	8	"C10orf11,COMTD1,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2,ZNF503"
TCGA.AG.A01W.01A	10	76660637	79443366	97	0.3252	NEUTRAL	NA	9	"C10orf11,COMTD1,DUPD1,DUSP13,KAT6B,KCNMA1,SAMD8,VDAC2,ZNF503"
TCGA.AA.A017.01A	10	76854384	105807780	2042	-0.0524	NEUTRAL	NA	228	Too-Many
TCGA.CM.5862	10	76958326	135434550	20960	-0.1737	NEUTRAL	NA	377	Too-Many
TCGA.A6.3810.01A	10	76971299	76990640	8	-0.3277	NEUTRAL	NA	1	VDAC2
TCGA.AA.A00F.01A	10	76971932	76990640	7	0.2156	NEUTRAL	NA	1	VDAC2
TCGA.AA.A01Q.01A	10	76971932	77160846	12	-0.1158	NEUTRAL	NA	3	"COMTD1,VDAC2,ZNF503"
TCGA.AM.5820	10	76989294	79435662	981	0.0974	NEUTRAL	NA	5	"C10orf11,COMTD1,KCNMA1,VDAC2,ZNF503"
TCGA.AA.A00N.01A	10	76993791	77806890	12	-0.2723	NEUTRAL	NA	3	"C10orf11,COMTD1,ZNF503"
TCGA.CK.5914.01A	10	76993791	78644664	17	-0.0303	NEUTRAL	NA	4	"C10orf11,COMTD1,KCNMA1,ZNF503"
TCGA.AG.A00C.01A	10	76993791	82043623	175	-0.1242	NEUTRAL	NA	19	"ANXA11,C10orf11,COMTD1,DLG5,EIF5AL1,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,TMEM254,ZCCHC24,ZMIZ1,ZNF503"
TCGA.AA.A00F.01A	10	76993791	82049053	177	-0.3198	NEUTRAL	NA	19	"ANXA11,C10orf11,COMTD1,DLG5,EIF5AL1,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,TMEM254,ZCCHC24,ZMIZ1,ZNF503"
TCGA.A6.3810.01A	10	76993791	101572743	1594	0.0678	NEUTRAL	NA	155	Too-Many
TCGA.AG.3909.01A	10	77160846	79396986	39	0.2511	NEUTRAL	NA	3	"C10orf11,KCNMA1,ZNF503"
TCGA.F5.6464	10	77170684	135434550	20949	-0.0286	NEUTRAL	NA	374	Too-Many
TCGA.AA.3844	10	77216954	79012125	717	-0.1722	NEUTRAL	NA	2	"C10orf11,KCNMA1"
TCGA.AA.3941	10	77216954	79013430	717	-0.0567	NEUTRAL	NA	2	"C10orf11,KCNMA1"
TCGA.AA.3982	10	77216954	79421976	926	0.1817	NEUTRAL	NA	2	"C10orf11,KCNMA1"
TCGA.AA.3850	10	77271930	79013430	703	-0.13345	NEUTRAL	NA	2	"C10orf11,KCNMA1"
TCGA.DM.A1D0	10	77317585	83667909	2409	0.0289	NEUTRAL	NA	23	"ANXA11,C10orf11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,KCNMA1,MAT1A,NRG3,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.AA.3518	10	77414884	109129534	10467	0.0091	NEUTRAL	NA	231	Too-Many
TCGA.DM.A1D9	10	77453941	77577698	39	-0.0124	NEUTRAL	NA	1	C10orf11
TCGA.G4.6297	10	77469351	78032263	218	-0.1702	NEUTRAL	NA	1	C10orf11
TCGA.D5.6922	10	77495220	79299010	789	0.2622	NEUTRAL	NA	2	"C10orf11,KCNMA1"
TCGA.G4.6626	10	77567727	82925042	2117	-0.0886	NEUTRAL	NA	22	"ANXA11,C10orf11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.CA.5254	10	77720080	77895118	64	0.2334	NEUTRAL	NA	1	C10orf11
TCGA.AA.A00D.01A	10	77818377	78839177	18	-0.4198	NEUTRAL	NA	2	"C10orf11,KCNMA1"
TCGA.CA.5254	10	77896047	80017445	911	-0.185	NEUTRAL	NA	5	"C10orf11,DLG5,KCNMA1,POLR3A,RPS24"
TCGA.G4.6297	10	78032987	96797499	6478	0.1373	NEUTRAL	NA	101	Too-Many
TCGA.AG.A026	10	78079292	135434550	20596	-0.0784	NEUTRAL	NA	374	Too-Many
TCGA.T9.A92H	10	78079292	135434550	20620	-0.0026	NEUTRAL	NA	374	Too-Many
TCGA.D5.5538	10	78140833	115922491	12729	-0.013	NEUTRAL	NA	256	Too-Many
TCGA.A6.6782	10	78141410	100642675	7731	0.0218	NEUTRAL	NA	145	Too-Many
TCGA.AH.6897	10	78168851	79253260	498	0.006	NEUTRAL	NA	2	"C10orf11,KCNMA1"
TCGA.DM.A1HA	10	78262181	79961930	729	-0.039	NEUTRAL	NA	5	"C10orf11,DLG5,KCNMA1,POLR3A,RPS24"
TCGA.A6.6650	10	78524173	98958033	6529	-0.0217	NEUTRAL	NA	119	Too-Many
TCGA.AG.A014.01A	10	78651266	135014958	3483	-0.0789	NEUTRAL	NA	359	Too-Many
TCGA.AA.A00D.01A	10	78844340	79588588	32	-0.0696	NEUTRAL	NA	2	"DLG5,KCNMA1"
TCGA.AA.3844	10	79012468	82533747	1368	0.1371	NEUTRAL	NA	21	"ANXA11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.AA.3850	10	79016282	82613860	1397	0.29635	NEUTRAL	NA	21	"ANXA11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.AH.6897	10	79253985	79318684	28	-0.5105	NEUTRAL	NA	1	KCNMA1
TCGA.D5.6922	10	79306964	79935836	225	-0.4598	NEUTRAL	NA	4	"DLG5,KCNMA1,POLR3A,RPS24"
TCGA.A6.5661	10	79312113	128929233	17333	-0.0846	NEUTRAL	NA	336	Too-Many
TCGA.AH.6897	10	79334198	89341067	3577	-0.0214	NEUTRAL	NA	43	"ADIRF,AGAP11,ANXA11,BMPR1A,C10orf99,CCSER2,CDHR1,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,FAM25A,FAM35A,GHITM,GLUD1,GRID1,KCNMA1,LDB3,LRIT1,LRIT2,MAT1A,MINPP1,MMRN2,NRG3,NUTM2A,NUTM2B,OPN4,PLAC9,POLR3A,PPIF,RGR,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,SNCG,TMEM254,TSPAN14,WAPAL,ZCCHC24,ZMIZ1"
TCGA.AA.A00N.01A	10	79396986	79569255	10	-0.4367	NEUTRAL	NA	2	"DLG5,KCNMA1"
TCGA.CK.5914.01A	10	79396986	79603195	28	-0.3815	NEUTRAL	NA	2	"DLG5,KCNMA1"
TCGA.AA.A01Q.01A	10	79396986	79616440	31	0.1556	NEUTRAL	NA	2	"DLG5,KCNMA1"
TCGA.AM.5820	10	79437971	79526392	18	-0.302	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	10	79447298	80645881	19	-0.2132	NEUTRAL	NA	3	"DLG5,POLR3A,RPS24"
TCGA.AA.A01T	10	79453217	83335196	1410	0.0444	NEUTRAL	NA	20	"ANXA11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.5M.AATE	10	79469611	135434550	19982	-0.201	NEUTRAL	NA	372	Too-Many
TCGA.AM.5820	10	79526495	79658054	65	0.3448	NEUTRAL	NA	1	DLG5
TCGA.AG.3909.01A	10	79552159	79603195	26	-0.4395	NEUTRAL	NA	1	DLG5
TCGA.AA.A00D.01A	10	79589081	79742381	16	-0.4583	NEUTRAL	NA	2	"DLG5,POLR3A"
TCGA.AM.5820	10	79661801	79915396	64	0.0151	NEUTRAL	NA	3	"DLG5,POLR3A,RPS24"
TCGA.G4.6317	10	79713314	80207742	199	0.2373	NEUTRAL	NA	2	"POLR3A,RPS24"
TCGA.AA.A00D.01A	10	79743627	81319018	63	-0.0837	NEUTRAL	NA	7	"EIF5AL1,POLR3A,PPIF,RPS24,SFTPA2,ZCCHC24,ZMIZ1"
TCGA.AA.A01C.01A	10	79744887	96361236	849	0.0706	NEUTRAL	NA	94	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ANXA11,ATAD1,BMPR1A,BTAF1,C10orf99,CCSER2,CDHR1,CEP55,CH25H,CPEB3,CYP26A1,CYP26C1,DYDC1,DYDC2,EIF5AL1,EXOC6,FAM213A,FAM25A,FAM35A,FAS,FFAR4,FGFBP3,FRA10AC1,GHITM,GLUD1,GRID1,HECTD2,HELLS,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,KLLN,LDB3,LGI1,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MARCH5,MAT1A,MINPP1,MMRN2,MYOF,NOC3L,NRG3,NUTM2A,NUTM2B,OPN4,PANK1,PAPSS2,PCGF5,PDE6C,PLAC9,PLCE1,POLR3A,PPIF,PPP1R3C,PTEN,RBP4,RGR,RNLS,RPP30,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,SLC16A12,SLC35G1,SNCG,STAMBPL1,TBC1D12,TMEM254,TNKS2,TSPAN14,WAPAL,ZCCHC24,ZMIZ1"
TCGA.AG.3909.01A	10	79770162	80975886	20	-0.0175	NEUTRAL	NA	3	"POLR3A,RPS24,ZMIZ1"
TCGA.CK.5914.01A	10	79778869	81275001	51	-0.2868	NEUTRAL	NA	6	"EIF5AL1,POLR3A,PPIF,RPS24,ZCCHC24,ZMIZ1"
TCGA.AA.A00N.01A	10	79795051	81275001	43	-0.3794	NEUTRAL	NA	5	"EIF5AL1,PPIF,RPS24,ZCCHC24,ZMIZ1"
TCGA.AA.A010.01A	10	79796904	81107276	29	0.0827	NEUTRAL	NA	3	"PPIF,RPS24,ZMIZ1"
TCGA.AM.5820	10	79915631	80805279	469	0.3391	NEUTRAL	NA	0	None
TCGA.D5.6922	10	79937207	82057987	791	0.2348	NEUTRAL	NA	12	"ANXA11,EIF5AL1,MAT1A,NUTM2B,PLAC9,PPIF,SFTPA1,SFTPA2,SFTPD,TMEM254,ZCCHC24,ZMIZ1"
TCGA.G4.6317	10	80208771	80240205	32	-0.3256	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	10	80706935	88267261	192	0.2973	NEUTRAL	NA	27	"ANXA11,C10orf99,CCSER2,CDHR1,DYDC1,DYDC2,EIF5AL1,FAM213A,GHITM,GRID1,LRIT1,LRIT2,MAT1A,NRG3,NUTM2B,PLAC9,PPIF,RGR,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,WAPAL,ZCCHC24,ZMIZ1"
TCGA.G4.6317	10	80711555	135434550	19437	-0.3092	NEUTRAL	NA	369	Too-Many
TCGA.AG.3881	10	80934947	80936446	3	0.0533	NEUTRAL	NA	1	ZMIZ1
TCGA.AA.A01Q.01A	10	80968045	81109364	22	-0.4071	NEUTRAL	NA	2	"PPIF,ZMIZ1"
TCGA.CA.5254	10	81034912	81047574	7	-0.329	NEUTRAL	NA	1	ZMIZ1
TCGA.CA.5254	10	81058026	81811671	128	0.1938	NEUTRAL	NA	8	"EIF5AL1,NUTM2B,PPIF,SFTPA1,SFTPA2,SFTPD,ZCCHC24,ZMIZ1"
TCGA.AG.3909.01A	10	81058759	81153994	17	-0.4172	NEUTRAL	NA	3	"PPIF,ZCCHC24,ZMIZ1"
TCGA.AA.3530	10	81074969	92038647	3801	-0.0035	NEUTRAL	NA	63	"ACTA2,ADIRF,AGAP11,ANKRD22,ANXA11,ATAD1,BMPR1A,C10orf99,CCSER2,CDHR1,CH25H,DYDC1,DYDC2,EIF5AL1,FAM213A,FAM25A,FAM35A,FAS,GHITM,GLUD1,GRID1,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MAT1A,MINPP1,MMRN2,NRG3,NUTM2A,NUTM2B,OPN4,PANK1,PAPSS2,PLAC9,PPIF,PTEN,RGR,RNLS,SFTPA1,SFTPA2,SFTPD,SH2D4B,SLC16A12,SNCG,STAMBPL1,TMEM254,TSPAN14,WAPAL,ZCCHC24,ZMIZ1"
TCGA.AM.5820	10	81075974	81121959	13	0.345	NEUTRAL	NA	2	"PPIF,ZMIZ1"
TCGA.CL.4957	10	81094701	83559049	715	-0.4156	NEUTRAL	NA	16	"ANXA11,DYDC1,DYDC2,EIF5AL1,FAM213A,MAT1A,NUTM2B,PLAC9,PPIF,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24"
TCGA.AG.A01L.01A	10	81108759	81372016	14	0.3268	NEUTRAL	NA	5	"EIF5AL1,PPIF,SFTPA1,SFTPA2,ZCCHC24"
TCGA.AA.A01Q.01A	10	81111195	81272439	8	0.1229	NEUTRAL	NA	3	"EIF5AL1,PPIF,ZCCHC24"
TCGA.CK.4952.01A	10	81135791	89107976	252	-0.0602	NEUTRAL	NA	36	"ADIRF,AGAP11,ANXA11,BMPR1A,C10orf99,CCSER2,CDHR1,DYDC1,DYDC2,EIF5AL1,FAM213A,FAM25A,FAM35A,GHITM,GLUD1,GRID1,LDB3,LRIT1,LRIT2,MAT1A,MMRN2,NRG3,NUTM2A,NUTM2B,OPN4,PLAC9,RGR,SFTPA1,SFTPA2,SFTPD,SH2D4B,SNCG,TMEM254,TSPAN14,WAPAL,ZCCHC24"
TCGA.AG.3909.01A	10	81192277	81706190	21	0.301	NEUTRAL	NA	6	"EIF5AL1,NUTM2B,SFTPA1,SFTPA2,SFTPD,ZCCHC24"
TCGA.AM.5820	10	81229958	84389613	998	0.0347	NEUTRAL	NA	15	"ANXA11,DYDC1,DYDC2,EIF5AL1,FAM213A,MAT1A,NRG3,NUTM2B,PLAC9,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14"
TCGA.AG.A01L.01A	10	81372887	85962687	94	-0.2205	NEUTRAL	NA	16	"ANXA11,C10orf99,CDHR1,DYDC1,DYDC2,FAM213A,GHITM,MAT1A,NRG3,NUTM2B,PLAC9,SFTPA1,SFTPD,SH2D4B,TMEM254,TSPAN14"
TCGA.AA.A00N.01A	10	81374700	81609672	5	-0.4137	NEUTRAL	NA	2	"NUTM2B,SFTPA1"
TCGA.AA.3939.01A	10	81374700	134218079	3618	0.1145	NEUTRAL	NA	344	Too-Many
TCGA.AG.3891.01A	10	81610139	94452078	587	-0.0915	NEUTRAL	NA	70	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ANXA11,ATAD1,BMPR1A,BTAF1,C10orf99,CCSER2,CDHR1,CH25H,CPEB3,DYDC1,DYDC2,FAM213A,FAM25A,FAM35A,FAS,FGFBP3,GHITM,GLUD1,GRID1,HECTD2,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MARCH5,MAT1A,MINPP1,MMRN2,NRG3,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PLAC9,PPP1R3C,PTEN,RGR,RNLS,RPP30,SFTPD,SH2D4B,SLC16A12,SNCG,STAMBPL1,TMEM254,TNKS2,TSPAN14,WAPAL"
TCGA.AA.A00D.01A	10	81706190	82111617	35	-0.1807	NEUTRAL	NA	7	"ANXA11,DYDC1,DYDC2,MAT1A,PLAC9,SFTPD,TMEM254"
TCGA.CK.5914.01A	10	81742247	81925823	20	-0.4492	NEUTRAL	NA	3	"ANXA11,PLAC9,TMEM254"
TCGA.AF.A56K	10	81836081	81984120	50	-0.183	NEUTRAL	NA	3	"ANXA11,PLAC9,TMEM254"
TCGA.AA.A01Q.01A	10	81841432	81925823	14	0.0279	NEUTRAL	NA	3	"ANXA11,PLAC9,TMEM254"
TCGA.AG.3909.01A	10	81926596	82095874	15	0.0366	NEUTRAL	NA	3	"ANXA11,DYDC1,MAT1A"
TCGA.CK.5914.01A	10	81926596	82101981	18	0.2339	NEUTRAL	NA	3	"ANXA11,DYDC1,MAT1A"
TCGA.AF.A56K	10	82012098	135434550	19032	-0.0675	NEUTRAL	NA	358	Too-Many
TCGA.AG.A00C.01A	10	82045208	82248954	17	0.354	NEUTRAL	NA	5	"DYDC1,DYDC2,FAM213A,MAT1A,TSPAN14"
TCGA.AA.A010.01A	10	82049053	83992247	35	-0.2167	NEUTRAL	NA	7	"DYDC1,DYDC2,FAM213A,MAT1A,NRG3,SH2D4B,TSPAN14"
TCGA.D5.6922	10	82072309	135434550	19017	-0.3808	NEUTRAL	NA	357	Too-Many
TCGA.AA.A00F.01A	10	82095874	82191691	14	0.0812	NEUTRAL	NA	3	"DYDC1,DYDC2,FAM213A"
TCGA.AG.3906.01A	10	82182122	83635089	20	0.3638	NEUTRAL	NA	4	"FAM213A,NRG3,SH2D4B,TSPAN14"
TCGA.AA.A01Q.01A	10	82185584	82298036	13	-0.0771	NEUTRAL	NA	3	"FAM213A,SH2D4B,TSPAN14"
TCGA.AA.A00N.01A	10	82248954	82348364	14	-0.0761	NEUTRAL	NA	2	"SH2D4B,TSPAN14"
TCGA.AG.3909.01A	10	82248954	84744803	27	0.1835	NEUTRAL	NA	3	"NRG3,SH2D4B,TSPAN14"
TCGA.CK.5914.01A	10	82248954	84744803	29	0.0879	NEUTRAL	NA	3	"NRG3,SH2D4B,TSPAN14"
TCGA.AA.A00D.01A	10	82248954	88476082	124	-0.1532	NEUTRAL	NA	14	"C10orf99,CCSER2,CDHR1,GHITM,GRID1,LDB3,LRIT1,LRIT2,NRG3,OPN4,RGR,SH2D4B,TSPAN14,WAPAL"
TCGA.AA.A00F.01A	10	82248954	90750557	256	-0.2766	NEUTRAL	NA	38	"ACTA2,ADIRF,AGAP11,ANKRD22,ATAD1,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,FAS,GHITM,GLUD1,GRID1,KLLN,LDB3,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MINPP1,MMRN2,NRG3,NUTM2A,OPN4,PAPSS2,PTEN,RGR,RNLS,SH2D4B,SNCG,STAMBPL1,TSPAN14,WAPAL"
TCGA.CA.5254	10	82256257	85918619	1463	0.2308	NEUTRAL	NA	4	"GHITM,NRG3,SH2D4B,TSPAN14"
TCGA.AG.A00C.01A	10	82264409	86237278	73	0.0084	NEUTRAL	NA	10	"C10orf99,CCSER2,CDHR1,GHITM,LRIT1,LRIT2,NRG3,RGR,SH2D4B,TSPAN14"
TCGA.DM.A1D9	10	82277296	82576650	167	0.0633	NEUTRAL	NA	2	"SH2D4B,TSPAN14"
TCGA.AY.A69D	10	82533747	135434550	18831	-0.3108	NEUTRAL	NA	352	Too-Many
TCGA.AA.3844	10	82537757	85600359	1162	-0.4085	NEUTRAL	NA	1	NRG3
TCGA.AA.3982	10	82537757	85642747	1185	-0.0968	NEUTRAL	NA	1	NRG3
TCGA.AA.3941	10	82537757	85657730	1192	-0.3669	NEUTRAL	NA	1	NRG3
TCGA.AA.3811	10	82568683	85655556	1171	-0.3925	NEUTRAL	NA	1	NRG3
TCGA.AA.3850	10	82622116	85578779	1127	-0.46855	NEUTRAL	NA	1	NRG3
TCGA.G4.6299	10	82881974	82888268	4	-0.4755	NEUTRAL	NA	0	None
TCGA.AG.3881	10	82881974	135434550	18736	-0.2782	NEUTRAL	NA	352	Too-Many
TCGA.D5.6539	10	82896875	87517612	1797	-0.0063	NEUTRAL	NA	9	"C10orf99,CCSER2,CDHR1,GHITM,GRID1,LRIT1,LRIT2,NRG3,RGR"
TCGA.EI.6508	10	82896875	121871131	12951	0.0071	NEUTRAL	NA	272	Too-Many
TCGA.EI.6509	10	82896875	135434550	18733	-0.1435	NEUTRAL	NA	352	Too-Many
TCGA.AA.3989	10	82906776	94805664	3967	-0.2663	NEUTRAL	NA	61	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ATAD1,BMPR1A,BTAF1,C10orf99,CCSER2,CDHR1,CH25H,CPEB3,EXOC6,FAM25A,FAM35A,FAS,FGFBP3,GHITM,GLUD1,GRID1,HECTD2,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MARCH5,MINPP1,MMRN2,NRG3,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RGR,RNLS,RPP30,SLC16A12,SNCG,STAMBPL1,TNKS2,WAPAL"
TCGA.G4.6626	10	82946939	123620312	13877	-0.3949	NEUTRAL	NA	276	Too-Many
TCGA.AG.3901	10	83169914	132209404	17451	-0.3246	NEUTRAL	NA	324	Too-Many
TCGA.AA.3712	10	83392370	135434550	18571	-0.0256	NEUTRAL	NA	352	Too-Many
TCGA.CL.4957	10	83559492	83776090	99	0.0738	NEUTRAL	NA	1	NRG3
TCGA.AA.3666	10	83591823	93730591	3587	0.0597	NEUTRAL	NA	55	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ATAD1,BMPR1A,BTAF1,C10orf99,CCSER2,CDHR1,CH25H,FAM25A,FAM35A,FAS,FGFBP3,GHITM,GLUD1,GRID1,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MINPP1,MMRN2,NRG3,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RGR,RNLS,RPP30,SLC16A12,SNCG,STAMBPL1,TNKS2,WAPAL"
TCGA.CL.4957	10	83782012	93462423	3459	-0.3976	NEUTRAL	NA	52	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ATAD1,BMPR1A,C10orf99,CCSER2,CDHR1,CH25H,FAM25A,FAM35A,FAS,GHITM,GLUD1,GRID1,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MINPP1,MMRN2,NRG3,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RGR,RNLS,RPP30,SLC16A12,SNCG,STAMBPL1,WAPAL"
TCGA.D5.6535	10	83830826	84136680	143	-0.3503	NEUTRAL	NA	1	NRG3
TCGA.DM.A1HA	10	83880653	86697789	1110	0.0177	NEUTRAL	NA	8	"C10orf99,CCSER2,CDHR1,GHITM,LRIT1,LRIT2,NRG3,RGR"
TCGA.AG.3906.01A	10	83992247	87966094	74	-0.1531	NEUTRAL	NA	9	"C10orf99,CCSER2,CDHR1,GHITM,GRID1,LRIT1,LRIT2,NRG3,RGR"
TCGA.AA.A010.01A	10	84118444	85991715	40	0.3291	NEUTRAL	NA	6	"C10orf99,CDHR1,GHITM,LRIT1,LRIT2,NRG3"
TCGA.D5.6535	10	84146871	128944079	15558	0.002	NEUTRAL	NA	316	Too-Many
TCGA.AA.3977	10	84805813	90183101	1805	0.0273	NEUTRAL	NA	26	"ADIRF,AGAP11,ATAD1,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,GHITM,GLUD1,GRID1,KLLN,LDB3,LRIT1,LRIT2,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,PTEN,RGR,RNLS,SNCG,WAPAL"
TCGA.AA.3556	10	85048343	85196102	58	0.021	NEUTRAL	NA	0	None
TCGA.AA.3851	10	85117703	135434550	17895	-0.4545	NEUTRAL	NA	351	Too-Many
TCGA.CI.6619	10	85155105	135434550	17876	0.0235	NEUTRAL	NA	351	Too-Many
TCGA.AY.6196	10	85549243	131455327	16038	0.0214	NEUTRAL	NA	321	Too-Many
TCGA.AA.3850	10	85581137	86428476	336	0.21765	NEUTRAL	NA	7	"C10orf99,CCSER2,CDHR1,GHITM,LRIT1,LRIT2,RGR"
TCGA.AA.3844	10	85600446	92038647	2242	-0.1414	NEUTRAL	NA	45	"ACTA2,ADIRF,AGAP11,ANKRD22,ATAD1,BMPR1A,C10orf99,CCSER2,CDHR1,CH25H,FAM25A,FAM35A,FAS,GHITM,GLUD1,GRID1,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MINPP1,MMRN2,NUTM2A,OPN4,PANK1,PAPSS2,PTEN,RGR,RNLS,SLC16A12,SNCG,STAMBPL1,WAPAL"
TCGA.AA.3982	10	85643776	86606280	377	0.3551	NEUTRAL	NA	7	"C10orf99,CCSER2,CDHR1,GHITM,LRIT1,LRIT2,RGR"
TCGA.CM.5349	10	85655556	93542185	2697	-0.4552	NEUTRAL	NA	51	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ATAD1,BMPR1A,C10orf99,CCSER2,CDHR1,CH25H,FAM25A,FAM35A,FAS,GHITM,GLUD1,GRID1,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MINPP1,MMRN2,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RGR,RNLS,RPP30,SLC16A12,SNCG,STAMBPL1,WAPAL"
TCGA.AA.3811	10	85657730	86562885	364	0.0641	NEUTRAL	NA	7	"C10orf99,CCSER2,CDHR1,GHITM,LRIT1,LRIT2,RGR"
TCGA.AA.3941	10	85664030	86479803	332	0.3027	NEUTRAL	NA	7	"C10orf99,CCSER2,CDHR1,GHITM,LRIT1,LRIT2,RGR"
TCGA.AA.A01Q.01A	10	85955216	85996934	22	0.0489	NEUTRAL	NA	3	"CDHR1,LRIT1,LRIT2"
TCGA.AG.A01L.01A	10	85981659	102040673	1289	-0.1125	NEUTRAL	NA	133	Too-Many
TCGA.AG.3909.01A	10	85996934	86223633	15	0.0417	NEUTRAL	NA	3	"CCSER2,LRIT1,RGR"
TCGA.AA.A01T	10	86004237	86898580	304	0.0305	NEUTRAL	NA	2	"CCSER2,RGR"
TCGA.CK.5914.01A	10	86130821	86230080	7	-0.2043	NEUTRAL	NA	1	CCSER2
TCGA.G4.6323	10	86149205	107132699	6313	-0.4783	NEUTRAL	NA	201	Too-Many
TCGA.CA.5254	10	86183392	86395513	77	0.1943	NEUTRAL	NA	1	CCSER2
TCGA.DM.A285	10	86233974	135434550	17409	-0.3395	NEUTRAL	NA	345	Too-Many
TCGA.AG.A00C.01A	10	86259577	87898529	15	-0.5041	NEUTRAL	NA	2	"CCSER2,GRID1"
TCGA.AZ.4684.01A	10	86259577	89117996	115	-0.2916	NEUTRAL	NA	14	"ADIRF,AGAP11,BMPR1A,CCSER2,FAM25A,FAM35A,GLUD1,GRID1,LDB3,MMRN2,NUTM2A,OPN4,SNCG,WAPAL"
TCGA.AA.3509.01A	10	86273173	89117996	114	-0.1516	NEUTRAL	NA	14	"ADIRF,AGAP11,BMPR1A,CCSER2,FAM25A,FAM35A,GLUD1,GRID1,LDB3,MMRN2,NUTM2A,OPN4,SNCG,WAPAL"
TCGA.AA.3850	10	86480664	87369122	350	-0.37775	NEUTRAL	NA	1	GRID1
TCGA.AA.3941	10	86526132	86639485	39	0.2026	NEUTRAL	NA	0	None
TCGA.CA.5254	10	86529605	88945340	809	0.2227	NEUTRAL	NA	12	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,LDB3,MMRN2,OPN4,SNCG,WAPAL"
TCGA.AA.3811	10	86566240	87313546	296	-0.3232	NEUTRAL	NA	0	None
TCGA.AA.3982	10	86615451	87320571	293	-0.0967	NEUTRAL	NA	0	None
TCGA.AA.3941	10	86639645	87065900	164	-0.3256	NEUTRAL	NA	0	None
TCGA.DM.A1HA	10	87023112	93994847	2232	0.0418	NEUTRAL	NA	48	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ATAD1,BMPR1A,BTAF1,CH25H,CPEB3,FAM25A,FAM35A,FAS,FGFBP3,GLUD1,GRID1,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,MMRN2,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RNLS,RPP30,SLC16A12,SNCG,STAMBPL1,TNKS2,WAPAL"
TCGA.AA.3941	10	87077599	87158820	30	-0.508	NEUTRAL	NA	0	None
TCGA.AA.3941	10	87160669	87218771	41	0.1525	NEUTRAL	NA	0	None
TCGA.AA.3941	10	87251998	87285906	14	0.085	NEUTRAL	NA	0	None
TCGA.AA.3811	10	87315580	90178455	805	0.031	NEUTRAL	NA	19	"ADIRF,AGAP11,ATAD1,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,KLLN,LDB3,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,PTEN,RNLS,SNCG,WAPAL"
TCGA.AA.3982	10	87330726	90139233	791	0.3059	NEUTRAL	NA	19	"ADIRF,AGAP11,ATAD1,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,KLLN,LDB3,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,PTEN,RNLS,SNCG,WAPAL"
TCGA.AA.3941	10	87330755	87543938	85	0.0225	NEUTRAL	NA	1	GRID1
TCGA.AA.3850	10	87369263	87519042	55	-0.02935	NEUTRAL	NA	1	GRID1
TCGA.A6.2682	10	87447051	109149274	6462	-0.4483	NEUTRAL	NA	201	Too-Many
TCGA.D5.6539	10	87519042	90354887	778	-0.4007	NEUTRAL	NA	20	"ADIRF,AGAP11,ATAD1,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,KLLN,LDB3,LIPJ,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,PTEN,RNLS,SNCG,WAPAL"
TCGA.AA.3850	10	87521967	89103047	423	0.34015	NEUTRAL	NA	13	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,LDB3,MMRN2,NUTM2A,OPN4,SNCG,WAPAL"
TCGA.D5.6932	10	87723674	135434550	16823	0.0036	NEUTRAL	NA	344	Too-Many
TCGA.NH.A50T	10	87785860	88051413	110	-0.3869	NEUTRAL	NA	1	GRID1
TCGA.AA.A01Q.01A	10	87898529	88683084	58	0.3093	NEUTRAL	NA	5	"BMPR1A,GRID1,LDB3,OPN4,WAPAL"
TCGA.AG.A00C.01A	10	87966094	89280766	94	0.1165	NEUTRAL	NA	14	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,LDB3,MINPP1,MMRN2,NUTM2A,OPN4,SNCG,WAPAL"
TCGA.NH.A50T	10	88051466	135434550	16599	-0.0283	NEUTRAL	NA	344	Too-Many
TCGA.CK.5914.01A	10	88123650	89419666	105	-0.2321	NEUTRAL	NA	15	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,LDB3,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,SNCG,WAPAL"
TCGA.AA.A02K.01A	10	88123682	88231919	14	0.1586	NEUTRAL	NA	2	"GRID1,WAPAL"
TCGA.AG.4009.01A	10	88230701	88452211	26	0.1385	NEUTRAL	NA	3	"LDB3,OPN4,WAPAL"
TCGA.AG.3909.01A	10	88230701	88946795	74	-0.2268	NEUTRAL	NA	11	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,LDB3,MMRN2,OPN4,SNCG,WAPAL"
TCGA.AG.3906.01A	10	88230701	99160799	941	0.0178	NEUTRAL	NA	93	"ACSM6,ACTA2,ADIRF,AGAP11,ALDH18A1,ANKRD1,ANKRD22,ARHGAP19,ATAD1,BLNK,BMPR1A,BTAF1,C10orf12,C10orf131,CC2D2B,CCNJ,CEP55,CH25H,CPEB3,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOC6,FAM25A,FAM35A,FAS,FFAR4,FGFBP3,FRA10AC1,FRAT1,FRAT2,GLUD1,HECTD2,HELLS,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,KLLN,LCOR,LDB3,LGI1,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MARCH5,MINPP1,MMRN2,MYOF,NOC3L,NUTM2A,OPALIN,OPN4,PANK1,PAPSS2,PCGF5,PDE6C,PDLIM1,PIK3AP1,PLCE1,PPP1R3C,PTEN,RBP4,RNLS,RPP30,RRP12,SLC16A12,SLC35G1,SLIT1,SNCG,SORBS1,STAMBPL1,TBC1D12,TCTN3,TLL2,TM9SF3,TNKS2,WAPAL,ZNF518A"
TCGA.AF.3914.01A	10	88231948	101578516	1183	-0.0236	NEUTRAL	NA	122	Too-Many
TCGA.AA.A02K.01A	10	88232320	88702058	44	-0.1044	NEUTRAL	NA	5	"BMPR1A,LDB3,MMRN2,OPN4,WAPAL"
TCGA.AF.2689	10	88239350	119118055	9870	-0.3846	NEUTRAL	NA	246	Too-Many
TCGA.AA.A010.01A	10	88256921	88441241	21	0.2732	NEUTRAL	NA	3	"LDB3,OPN4,WAPAL"
TCGA.AA.A00N.01A	10	88281140	88659533	33	0.1291	NEUTRAL	NA	4	"BMPR1A,LDB3,OPN4,WAPAL"
TCGA.AG.A01W.01A	10	88404475	88415381	11	-0.421	NEUTRAL	NA	1	OPN4
TCGA.AG.A01W.01A	10	88418374	88692038	26	0.3457	NEUTRAL	NA	3	"BMPR1A,LDB3,OPN4"
TCGA.AG.4009.01A	10	88459017	88854035	44	-0.4371	NEUTRAL	NA	8	"ADIRF,AGAP11,BMPR1A,FAM25A,GLUD1,LDB3,MMRN2,SNCG"
TCGA.AA.A00D.01A	10	88477712	89468926	54	0.2035	NEUTRAL	NA	12	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,LDB3,MINPP1,MMRN2,NUTM2A,PAPSS2,SNCG"
TCGA.AA.A01Q.01A	10	88696480	89311801	38	-0.0244	NEUTRAL	NA	9	"ADIRF,AGAP11,FAM25A,FAM35A,GLUD1,MINPP1,MMRN2,NUTM2A,SNCG"
TCGA.AA.A02K.01A	10	88703023	88729908	10	-0.4586	NEUTRAL	NA	3	"ADIRF,MMRN2,SNCG"
TCGA.AA.A00N.01A	10	88717093	89311801	44	-0.3872	NEUTRAL	NA	9	"ADIRF,AGAP11,FAM25A,FAM35A,GLUD1,MINPP1,MMRN2,NUTM2A,SNCG"
TCGA.AA.A010.01A	10	88728232	88817397	11	0.1523	NEUTRAL	NA	4	"ADIRF,AGAP11,FAM25A,GLUD1"
TCGA.AA.A02K.01A	10	88730197	104141847	1579	-0.1703	NEUTRAL	NA	155	Too-Many
TCGA.AG.A01W.01A	10	88751394	88801450	6	0.0599	NEUTRAL	NA	2	"AGAP11,FAM25A"
TCGA.AG.A01W.01A	10	88901045	88936776	9	0.0239	NEUTRAL	NA	1	FAM35A
TCGA.AA.A010.01A	10	88911073	91533675	200	0.0621	NEUTRAL	NA	27	"ACTA2,ANKRD22,ATAD1,CH25H,FAM35A,FAS,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,NUTM2A,PANK1,PAPSS2,PTEN,RNLS,SLC16A12,STAMBPL1"
TCGA.AG.4009.01A	10	88911073	94714360	374	-0.0729	NEUTRAL	NA	42	"ACTA2,ANKRD1,ANKRD22,ATAD1,BTAF1,CH25H,CPEB3,EXOC6,FAM35A,FAS,FGFBP3,HECTD2,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,KLLN,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MARCH5,MINPP1,NUTM2A,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RNLS,RPP30,SLC16A12,STAMBPL1,TNKS2"
TCGA.CA.5254	10	88946888	89993470	262	-0.1374	NEUTRAL	NA	7	"ATAD1,FAM35A,KLLN,MINPP1,NUTM2A,PAPSS2,PTEN"
TCGA.BM.6198	10	88947060	93685617	1564	-0.40805	NEUTRAL	NA	36	"ACTA2,ANKRD1,ANKRD22,ATAD1,BTAF1,CH25H,FAM35A,FAS,FGFBP3,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,NUTM2A,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RNLS,RPP30,SLC16A12,STAMBPL1,TNKS2"
TCGA.AA.3850	10	89164707	89853441	208	-0.01415	NEUTRAL	NA	5	"ATAD1,KLLN,MINPP1,PAPSS2,PTEN"
TCGA.AA.3941	10	89164707	90101827	292	0.0867	NEUTRAL	NA	6	"ATAD1,KLLN,MINPP1,PAPSS2,PTEN,RNLS"
TCGA.F4.6461	10	89164707	90374056	364	-0.467	NEUTRAL	NA	7	"ATAD1,KLLN,LIPJ,MINPP1,PAPSS2,PTEN,RNLS"
TCGA.AZ.4681	10	89164707	135434550	16486	0.0111	NEUTRAL	NA	331	Too-Many
TCGA.CK.4952.01A	10	89254606	92670664	216	0.0454	NEUTRAL	NA	27	"ACTA2,ANKRD22,ATAD1,CH25H,FAS,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,PANK1,PAPSS2,PTEN,RNLS,RPP30,SLC16A12,STAMBPL1"
TCGA.A6.3808.01A	10	89264626	90773015	114	0.2029	NEUTRAL	NA	15	"ACTA2,ANKRD22,ATAD1,FAS,KLLN,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,PAPSS2,PTEN,RNLS,STAMBPL1"
TCGA.AA.3861.01A	10	89264626	105752339	1787	-0.1286	NEUTRAL	NA	179	Too-Many
TCGA.AA.3862.01A	10	89272844	99216484	931	-0.0454	NEUTRAL	NA	84	"ACSM6,ACTA2,ALDH18A1,ANKRD1,ANKRD22,ARHGAP19,ATAD1,BLNK,BTAF1,C10orf12,C10orf131,CC2D2B,CCNJ,CEP55,CH25H,CPEB3,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOC6,EXOSC1,FAS,FFAR4,FGFBP3,FRA10AC1,FRAT1,FRAT2,HECTD2,HELLS,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,KLLN,LCOR,LGI1,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MARCH5,MINPP1,MYOF,NOC3L,OPALIN,PANK1,PAPSS2,PCGF5,PDE6C,PDLIM1,PGAM1,PIK3AP1,PLCE1,PPP1R3C,PTEN,RBP4,RNLS,RPP30,RRP12,SLC16A12,SLC35G1,SLIT1,SORBS1,STAMBPL1,TBC1D12,TCTN3,TLL2,TM9SF3,TNKS2,ZDHHC16,ZNF518A"
TCGA.D5.5539	10	89308021	90295429	333	-0.3818	NEUTRAL	NA	6	"ATAD1,KLLN,MINPP1,PAPSS2,PTEN,RNLS"
TCGA.AG.3909.01A	10	89311801	90682073	90	-0.031	NEUTRAL	NA	13	"ANKRD22,ATAD1,KLLN,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,PAPSS2,PTEN,RNLS,STAMBPL1"
TCGA.AG.A00C.01A	10	89311801	90708510	98	-0.1897	NEUTRAL	NA	14	"ACTA2,ANKRD22,ATAD1,KLLN,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,PAPSS2,PTEN,RNLS,STAMBPL1"
TCGA.AH.6897	10	89342393	102391739	4114	-0.4154	NEUTRAL	NA	121	Too-Many
TCGA.AA.A00D.01A	10	89472814	90750557	82	-0.1587	NEUTRAL	NA	14	"ACTA2,ANKRD22,ATAD1,FAS,KLLN,LIPF,LIPJ,LIPK,LIPM,LIPN,PAPSS2,PTEN,RNLS,STAMBPL1"
TCGA.AG.A00Y.01A	10	89487000	93786839	281	-0.168	NEUTRAL	NA	33	"ACTA2,ANKRD1,ANKRD22,ATAD1,BTAF1,CH25H,FAS,FGFBP3,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RNLS,RPP30,SLC16A12,STAMBPL1,TNKS2"
TCGA.CK.5914.01A	10	89550020	90502942	47	-0.0309	NEUTRAL	NA	7	"ATAD1,KLLN,LIPF,LIPJ,LIPK,PTEN,RNLS"
TCGA.AA.A01Q.01A	10	89624170	90682852	53	-0.0832	NEUTRAL	NA	9	"ANKRD22,LIPF,LIPJ,LIPK,LIPM,LIPN,PTEN,RNLS,STAMBPL1"
TCGA.A6.2681	10	89700670	135434550	16347	-0.1047	NEUTRAL	NA	327	Too-Many
TCGA.QG.A5YW	10	89745813	116856070	8761	-0.032	NEUTRAL	NA	215	Too-Many
TCGA.AA.3850	10	89854114	93273844	1250	-0.32925	NEUTRAL	NA	25	"ACTA2,ANKRD1,ANKRD22,CH25H,FAS,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,PANK1,PCGF5,RNLS,RPP30,SLC16A12,STAMBPL1"
TCGA.CA.5254	10	89998282	90091539	32	0.197	NEUTRAL	NA	1	RNLS
TCGA.AA.3982	10	90142489	90183407	12	-0.223	NEUTRAL	NA	1	RNLS
TCGA.AA.3977	10	90199816	90219297	11	0.0991	NEUTRAL	NA	1	RNLS
TCGA.AA.3982	10	90199816	90349909	36	-0.1872	NEUTRAL	NA	2	"LIPJ,RNLS"
TCGA.AA.3864	10	90199816	91998573	727	-0.0284	NEUTRAL	NA	20	"ACTA2,ANKRD22,CH25H,FAS,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,PANK1,RNLS,SLC16A12,STAMBPL1"
TCGA.AA.3811	10	90212661	90334178	31	-0.1451	NEUTRAL	NA	1	RNLS
TCGA.AA.3977	10	90229233	90349909	21	-0.001	NEUTRAL	NA	2	"LIPJ,RNLS"
TCGA.AA.A01T	10	90237397	135434550	16150	-0.2477	NEUTRAL	NA	326	Too-Many
TCGA.D5.5539	10	90295772	91814478	620	0.2696	NEUTRAL	NA	20	"ACTA2,ANKRD22,CH25H,FAS,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,PANK1,RNLS,SLC16A12,STAMBPL1"
TCGA.AG.3611.01A	10	90351117	98312648	613	-0.1582	NEUTRAL	NA	67	"ACSM6,ACTA2,ALDH18A1,ANKRD1,ANKRD22,BLNK,BTAF1,C10orf131,CC2D2B,CCNJ,CEP55,CH25H,CPEB3,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOC6,FAS,FFAR4,FGFBP3,FRA10AC1,HECTD2,HELLS,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,LGI1,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MARCH5,MYOF,NOC3L,OPALIN,PANK1,PCGF5,PDE6C,PDLIM1,PLCE1,PPP1R3C,RBP4,RPP30,SLC16A12,SLC35G1,SORBS1,STAMBPL1,TBC1D12,TCTN3,TLL2,TM9SF3,TNKS2,ZNF518A"
TCGA.AA.3811	10	90354887	92560412	879	-0.213	NEUTRAL	NA	20	"ACTA2,ANKRD22,CH25H,FAS,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,PANK1,SLC16A12,STAMBPL1"
TCGA.AA.3977	10	90354887	102222956	3741	0.081	NEUTRAL	NA	113	Too-Many
TCGA.D5.6539	10	90356597	135434550	16116	-0.0181	NEUTRAL	NA	325	Too-Many
TCGA.AA.3941	10	90357104	90512305	66	-0.0049	NEUTRAL	NA	3	"LIPF,LIPJ,LIPK"
TCGA.AA.3982	10	90361835	91972847	678	0.0539	NEUTRAL	NA	19	"ACTA2,ANKRD22,CH25H,FAS,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,PANK1,SLC16A12,STAMBPL1"
TCGA.F4.6461	10	90403796	114060152	7550	-0.0085	NEUTRAL	NA	194	Too-Many
TCGA.AA.3664	10	90422135	135434550	16138	-0.0065	NEUTRAL	NA	324	Too-Many
TCGA.A6.6649	10	90477589	135434550	16119	-0.0695	NEUTRAL	NA	323	Too-Many
TCGA.AA.A00N.01A	10	90512265	90530595	7	-0.0116	NEUTRAL	NA	2	"LIPK,LIPN"
TCGA.AA.3941	10	90539245	90813937	141	-0.037	NEUTRAL	NA	5	"ACTA2,ANKRD22,FAS,LIPM,STAMBPL1"
TCGA.CK.5914.01A	10	90568014	90670664	17	-0.168	NEUTRAL	NA	3	"ANKRD22,LIPM,STAMBPL1"
TCGA.AZ.4684.01A	10	90568014	91492618	94	0.027	NEUTRAL	NA	15	"ACTA2,ANKRD22,CH25H,FAS,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,LIPM,PANK1,SLC16A12,STAMBPL1"
TCGA.AA.A00N.01A	10	90585736	90682852	14	-0.13	NEUTRAL	NA	2	"ANKRD22,STAMBPL1"
TCGA.NH.A6GC	10	90609717	135434550	15987	-0.5034	NEUTRAL	NA	320	Too-Many
TCGA.AG.A00C.01A	10	90732902	91007257	19	0.2446	NEUTRAL	NA	4	"ACTA2,CH25H,FAS,LIPA"
TCGA.AA.A00F.01A	10	90762769	91007257	17	-0.005	NEUTRAL	NA	3	"CH25H,FAS,LIPA"
TCGA.AA.A01Q.01A	10	90762769	91065720	18	-0.1372	NEUTRAL	NA	4	"CH25H,FAS,IFIT2,LIPA"
TCGA.AA.A00D.01A	10	90762769	91176915	29	0.2654	NEUTRAL	NA	8	"CH25H,FAS,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,LIPA"
TCGA.AA.3941	10	90836479	91427832	257	0.0773	NEUTRAL	NA	9	"CH25H,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,LIPA,PANK1,SLC16A12"
TCGA.CK.5914.01A	10	90975639	93237893	106	0.1209	NEUTRAL	NA	14	"ANKRD1,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,PANK1,PCGF5,RPP30,SLC16A12"
TCGA.AG.A00C.01A	10	91061786	91143024	8	-0.1677	NEUTRAL	NA	3	"IFIT1B,IFIT2,IFIT3"
TCGA.AG.3909.01A	10	91061786	94353081	211	-0.0323	NEUTRAL	NA	21	"ANKRD1,BTAF1,CPEB3,FGFBP3,HECTD2,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,MARCH5,PANK1,PCGF5,PPP1R3C,RPP30,SLC16A12,TNKS2"
TCGA.AA.A00F.01A	10	91065720	99160799	657	-0.2814	NEUTRAL	NA	64	"ACSM6,ALDH18A1,ANKRD1,ARHGAP19,BLNK,BTAF1,C10orf12,C10orf131,CC2D2B,CCNJ,CEP55,CPEB3,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOC6,FFAR4,FGFBP3,FRA10AC1,FRAT1,FRAT2,HECTD2,HELLS,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,LCOR,LGI1,MARCH5,MYOF,NOC3L,OPALIN,PANK1,PCGF5,PDE6C,PDLIM1,PIK3AP1,PLCE1,PPP1R3C,RBP4,RPP30,RRP12,SLC16A12,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,TNKS2,ZNF518A"
TCGA.AA.A01Q.01A	10	91087733	94834555	261	0.1516	NEUTRAL	NA	24	"ANKRD1,BTAF1,CPEB3,CYP26A1,CYP26C1,EXOC6,FGFBP3,HECTD2,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT3,IFIT5,KIF11,KIF20B,MARCH5,PANK1,PCGF5,PPP1R3C,RPP30,SLC16A12,TNKS2"
TCGA.AG.A00C.01A	10	91152393	91192771	5	0.3643	NEUTRAL	NA	3	"IFIT1,IFIT5,SLC16A12"
TCGA.CA.5254	10	91161354	91253507	40	0.1592	NEUTRAL	NA	3	"IFIT1,IFIT5,SLC16A12"
TCGA.AA.A00D.01A	10	91192771	91474710	20	-0.1441	NEUTRAL	NA	3	"KIF20B,PANK1,SLC16A12"
TCGA.AA.A00N.01A	10	91195790	94297086	195	0.3581	NEUTRAL	NA	15	"ANKRD1,BTAF1,CPEB3,FGFBP3,HECTD2,HTR7,IDE,KIF20B,MARCH5,PANK1,PCGF5,PPP1R3C,RPP30,SLC16A12,TNKS2"
TCGA.AG.A00C.01A	10	91195790	94353081	195	-0.0998	NEUTRAL	NA	16	"ANKRD1,BTAF1,CPEB3,FGFBP3,HECTD2,HTR7,IDE,KIF11,KIF20B,MARCH5,PANK1,PCGF5,PPP1R3C,RPP30,SLC16A12,TNKS2"
TCGA.CA.5254	10	91256165	92355755	381	-0.123	NEUTRAL	NA	3	"KIF20B,PANK1,SLC16A12"
TCGA.AA.3941	10	91428403	91632995	74	-0.1842	NEUTRAL	NA	1	KIF20B
TCGA.AA.A00Q.01A	10	91469662	91528007	26	0.2499	NEUTRAL	NA	1	KIF20B
TCGA.AA.A00D.01A	10	91476155	91533675	25	0.1759	NEUTRAL	NA	1	KIF20B
TCGA.AA.A00Q.01A	10	91528453	93000193	29	-0.2855	NEUTRAL	NA	5	"ANKRD1,HTR7,KIF20B,PCGF5,RPP30"
TCGA.AA.3941	10	91649716	91956355	100	-0.2454	NEUTRAL	NA	0	None
TCGA.D5.5539	10	91815889	92838775	388	-0.3928	NEUTRAL	NA	3	"ANKRD1,HTR7,RPP30"
TCGA.AA.3982	10	92050908	92153835	33	-0.1058	NEUTRAL	NA	0	None
TCGA.AA.3844	10	92050908	93273844	400	-0.2723	NEUTRAL	NA	5	"ANKRD1,HECTD2,HTR7,PCGF5,RPP30"
TCGA.AA.3941	10	92050908	93273844	400	-0.1217	NEUTRAL	NA	5	"ANKRD1,HECTD2,HTR7,PCGF5,RPP30"
TCGA.AA.3530	10	92050908	117507222	8036	0.0603	NEUTRAL	NA	195	Too-Many
TCGA.AA.3982	10	92167504	93790504	476	0.1312	NEUTRAL	NA	9	"ANKRD1,BTAF1,FGFBP3,HECTD2,HTR7,PCGF5,PPP1R3C,RPP30,TNKS2"
TCGA.AA.3864	10	92167736	93419009	413	-0.03	NEUTRAL	NA	6	"ANKRD1,HECTD2,HTR7,PCGF5,PPP1R3C,RPP30"
TCGA.CA.5254	10	92359479	92716618	118	0.2352	NEUTRAL	NA	3	"ANKRD1,HTR7,RPP30"
TCGA.AA.A00D.01A	10	92502172	92680684	24	-0.4196	NEUTRAL	NA	3	"ANKRD1,HTR7,RPP30"
TCGA.AZ.4684.01A	10	92502172	94110800	125	0.1983	NEUTRAL	NA	11	"ANKRD1,BTAF1,CPEB3,FGFBP3,HECTD2,HTR7,MARCH5,PCGF5,PPP1R3C,RPP30,TNKS2"
TCGA.AA.3811	10	92562830	100433913	2352	0.0919	NEUTRAL	NA	77	"ACSM6,ALDH18A1,ANKRD1,ANKRD2,ARHGAP19,AVPI1,BLNK,BTAF1,C10orf12,C10orf131,C10orf62,CC2D2B,CCNJ,CEP55,CPEB3,CRTAC1,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOC6,EXOSC1,FFAR4,FGFBP3,FRA10AC1,FRAT1,FRAT2,GOLGA7B,HECTD2,HELLS,HHEX,HOGA1,HPS1,HPSE2,HTR7,IDE,KIF11,LCOR,LGI1,LOXL4,MARCH5,MARVELD1,MMS19,MORN4,MYOF,NOC3L,OPALIN,PCGF5,PDE6C,PDLIM1,PGAM1,PI4K2A,PIK3AP1,PLCE1,PPP1R3C,PYROXD2,R3HCC1L,RBP4,RPP30,RRP12,SFRP5,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,TNKS2,UBTD1,ZDHHC16,ZFYVE27,ZNF518A"
TCGA.CI.6622	10	92631243	135434550	15229	-0.0051	NEUTRAL	NA	305	Too-Many
TCGA.A6.3808.01A	10	92631707	93757323	96	0.3306	NEUTRAL	NA	8	"ANKRD1,BTAF1,FGFBP3,HECTD2,PCGF5,PPP1R3C,RPP30,TNKS2"
TCGA.CA.5254	10	92723863	94636366	433	-0.1612	NEUTRAL	NA	12	"BTAF1,CPEB3,EXOC6,FGFBP3,HECTD2,HHEX,IDE,KIF11,MARCH5,PCGF5,PPP1R3C,TNKS2"
TCGA.D5.5539	10	92848303	135434550	15121	0.2233	NEUTRAL	NA	303	Too-Many
TCGA.AA.A00D.01A	10	92982577	94297086	127	0.0389	NEUTRAL	NA	9	"BTAF1,CPEB3,FGFBP3,HECTD2,IDE,MARCH5,PCGF5,PPP1R3C,TNKS2"
TCGA.AA.A00Q.01A	10	93008189	94333627	127	0.0647	NEUTRAL	NA	9	"BTAF1,CPEB3,FGFBP3,HECTD2,IDE,MARCH5,PCGF5,PPP1R3C,TNKS2"
TCGA.AA.A010.01A	10	93221825	94396903	134	0.3601	NEUTRAL	NA	9	"BTAF1,CPEB3,FGFBP3,HECTD2,IDE,KIF11,MARCH5,PPP1R3C,TNKS2"
TCGA.AA.3509.01A	10	93272020	97817536	494	-0.0232	NEUTRAL	NA	38	"ACSM6,ALDH18A1,BTAF1,C10orf131,CC2D2B,CCNJ,CEP55,CPEB3,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,ENTPD1,EXOC6,FFAR4,FGFBP3,FRA10AC1,HECTD2,HELLS,HHEX,IDE,KIF11,LGI1,MARCH5,MYOF,NOC3L,PDE6C,PDLIM1,PLCE1,PPP1R3C,RBP4,SLC35G1,SORBS1,TBC1D12,TCTN3,TNKS2"
TCGA.AA.3850	10	93280640	93631318	89	0.13035	NEUTRAL	NA	2	"PPP1R3C,TNKS2"
TCGA.AA.3844	10	93280640	106713807	3732	0.0429	NEUTRAL	NA	157	Too-Many
TCGA.AA.3941	10	93344713	93790504	87	0.0978	NEUTRAL	NA	4	"BTAF1,FGFBP3,PPP1R3C,TNKS2"
TCGA.CK.5914.01A	10	93392631	94353081	103	0.0428	NEUTRAL	NA	8	"BTAF1,CPEB3,FGFBP3,IDE,KIF11,MARCH5,PPP1R3C,TNKS2"
TCGA.AA.3864	10	93450506	95231179	400	0.1591	NEUTRAL	NA	12	"BTAF1,CPEB3,CYP26A1,CYP26C1,EXOC6,FGFBP3,HHEX,IDE,KIF11,MARCH5,MYOF,TNKS2"
TCGA.CL.4957	10	93483871	93730491	41	0.1087	NEUTRAL	NA	3	"BTAF1,FGFBP3,TNKS2"
TCGA.A6.A56B	10	93483871	135434550	14888	-0.475	NEUTRAL	NA	300	Too-Many
TCGA.CM.5349	10	93561209	135434550	14962	-0.0422	NEUTRAL	NA	300	Too-Many
TCGA.DC.6160.01A	10	93566832	135290011	3352	-0.476	NEUTRAL	NA	298	Too-Many
TCGA.CK.4952.01A	10	93609162	135290011	3332	-0.0277	NEUTRAL	NA	298	Too-Many
TCGA.AA.3967.01A	10	93610956	101829454	887	-0.0955	NEUTRAL	NA	81	"ABCC2,ACSM6,ALDH18A1,ANKRD2,ARHGAP19,AVPI1,BLNK,BTAF1,C10orf12,C10orf131,C10orf62,CC2D2B,CCNJ,CEP55,CNNM1,COX15,CPEB3,CPN1,CRTAC1,CUTC,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNMBP,DNTT,ENTPD1,ENTPD7,EXOC6,EXOSC1,FFAR4,FGFBP3,FRA10AC1,FRAT1,FRAT2,GOLGA7B,GOT1,HELLS,HHEX,HOGA1,HPS1,HPSE2,IDE,KIF11,LCOR,LGI1,LOXL4,MARCH5,MARVELD1,MMS19,MORN4,MYOF,NKX2-3,NOC3L,OPALIN,PDE6C,PDLIM1,PGAM1,PI4K2A,PIK3AP1,PLCE1,PYROXD2,R3HCC1L,RBP4,RRP12,SFRP5,SLC25A28,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,TNKS2,UBTD1,ZDHHC16,ZFYVE27,ZNF518A"
TCGA.BM.6198	10	93713362	107854440	4040	0.05685	NEUTRAL	NA	154	Too-Many
TCGA.CL.4957	10	93730591	95477537	465	-0.3326	NEUTRAL	NA	15	"BTAF1,CEP55,CPEB3,CYP26A1,CYP26C1,EXOC6,FFAR4,FRA10AC1,HHEX,IDE,KIF11,MARCH5,MYOF,PDE6C,RBP4"
TCGA.AA.3666	10	93740428	135434550	14941	-0.4376	NEUTRAL	NA	298	Too-Many
TCGA.A6.3808.01A	10	93786302	99126777	591	-0.1275	NEUTRAL	NA	48	"ACSM6,ALDH18A1,ARHGAP19,BLNK,BTAF1,C10orf12,C10orf131,CC2D2B,CCNJ,CEP55,CPEB3,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOC6,FFAR4,FRA10AC1,FRAT1,FRAT2,HELLS,HHEX,IDE,KIF11,LCOR,LGI1,MARCH5,MYOF,NOC3L,OPALIN,PDE6C,PDLIM1,PIK3AP1,PLCE1,RBP4,RRP12,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,ZNF518A"
TCGA.AG.A00Y.01A	10	93788520	135440021	2950	0.1509	NEUTRAL	NA	299	Too-Many
TCGA.AG.3598	10	93802506	135434550	14886	-0.0156	NEUTRAL	NA	297	Too-Many
TCGA.AZ.4684.01A	10	94214152	94452438	50	-0.4447	NEUTRAL	NA	3	"HHEX,IDE,KIF11"
TCGA.AG.A01W.01A	10	94257817	94359096	13	-0.1273	NEUTRAL	NA	2	"IDE,KIF11"
TCGA.AA.A00D.01A	10	94353081	95276750	60	0.3763	NEUTRAL	NA	7	"CEP55,CYP26A1,CYP26C1,EXOC6,HHEX,KIF11,MYOF"
TCGA.AG.A00C.01A	10	94365985	94413380	20	0.18	NEUTRAL	NA	1	KIF11
TCGA.AG.3909.01A	10	94365985	94836673	52	-0.4693	NEUTRAL	NA	5	"CYP26A1,CYP26C1,EXOC6,HHEX,KIF11"
TCGA.CK.5914.01A	10	94365985	95113508	77	-0.3632	NEUTRAL	NA	6	"CYP26A1,CYP26C1,EXOC6,HHEX,KIF11,MYOF"
TCGA.AA.A01F.01A	10	94376453	96101403	117	0.1112	NEUTRAL	NA	15	"CEP55,CYP26A1,CYP26C1,EXOC6,FFAR4,FRA10AC1,HHEX,KIF11,LGI1,MYOF,NOC3L,PDE6C,PLCE1,RBP4,SLC35G1"
TCGA.AG.A01W.01A	10	94442059	94825522	30	-0.0297	NEUTRAL	NA	3	"CYP26C1,EXOC6,HHEX"
TCGA.AZ.4684.01A	10	94454272	94821750	24	0.3254	NEUTRAL	NA	3	"CYP26C1,EXOC6,HHEX"
TCGA.AA.A00L.01A	10	94454272	97442398	239	0.045	NEUTRAL	NA	25	"ACSM6,ALDH18A1,CEP55,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,EXOC6,FFAR4,FRA10AC1,HELLS,HHEX,LGI1,MYOF,NOC3L,PDE6C,PDLIM1,PLCE1,RBP4,SLC35G1,SORBS1,TBC1D12,TCTN3"
TCGA.AA.A00Q.01A	10	94454272	102766195	872	-0.0782	NEUTRAL	NA	90	"ABCC2,ACSM6,ALDH18A1,ANKRD2,ARHGAP19,AVPI1,BLNK,BLOC1S2,C10orf12,C10orf131,C10orf2,C10orf62,CC2D2B,CCNJ,CEP55,CHUK,CNNM1,COX15,CPN1,CRTAC1,CUTC,CWF19L1,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNMBP,DNTT,ENTPD1,ENTPD7,ERLIN1,EXOC6,EXOSC1,FAM178A,FFAR4,FRA10AC1,FRAT1,FRAT2,GOLGA7B,GOT1,HELLS,HHEX,HIF1AN,HOGA1,HPS1,HPSE2,LCOR,LGI1,LOXL4,LZTS2,MARVELD1,MMS19,MORN4,MRPL43,MYOF,NDUFB8,NKX2-3,NOC3L,OPALIN,PAX2,PDE6C,PDLIM1,PGAM1,PI4K2A,PIK3AP1,PKD2L1,PLCE1,PYROXD2,R3HCC1L,RBP4,RRP12,SCD,SEC31B,SEMA4G,SFRP5,SLC25A28,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,UBTD1,WNT8B,ZDHHC16,ZFYVE27,ZNF518A"
TCGA.AG.3891.01A	10	94653059	94834555	25	-0.1374	NEUTRAL	NA	3	"CYP26A1,CYP26C1,EXOC6"
TCGA.AG.A00C.01A	10	94653059	99186013	512	-0.0485	NEUTRAL	NA	42	"ACSM6,ALDH18A1,ARHGAP19,BLNK,C10orf12,C10orf131,CC2D2B,CCNJ,CEP55,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOC6,FFAR4,FRA10AC1,FRAT1,FRAT2,HELLS,LCOR,LGI1,MYOF,NOC3L,OPALIN,PDE6C,PDLIM1,PIK3AP1,PLCE1,RBP4,RRP12,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,ZNF518A"
TCGA.CA.5254	10	94659514	94786258	27	0.1811	NEUTRAL	NA	1	EXOC6
TCGA.AA.A010.01A	10	94679712	94700472	5	0.2777	NEUTRAL	NA	1	EXOC6
TCGA.AZ.4684.01A	10	94822485	95429508	96	-0.3389	NEUTRAL	NA	8	"CEP55,CYP26A1,CYP26C1,FFAR4,FRA10AC1,MYOF,PDE6C,RBP4"
TCGA.AG.A01W.01A	10	94826271	95408599	82	-0.4588	NEUTRAL	NA	7	"CEP55,CYP26A1,CYP26C1,FFAR4,MYOF,PDE6C,RBP4"
TCGA.AA.3989	10	94826464	99311628	1442	0.0957	NEUTRAL	NA	46	"ACSM6,ALDH18A1,ARHGAP19,BLNK,C10orf12,C10orf131,CC2D2B,CCNJ,CEP55,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOSC1,FFAR4,FRA10AC1,FRAT1,FRAT2,HELLS,LCOR,LGI1,MMS19,MYOF,NOC3L,OPALIN,PDE6C,PDLIM1,PGAM1,PIK3AP1,PLCE1,RBP4,RRP12,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,UBTD1,ZDHHC16,ZNF518A"
TCGA.CA.5254	10	94875122	94911299	23	0.0669	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	10	95066641	95338852	59	0.1506	NEUTRAL	NA	3	"CEP55,FFAR4,MYOF"
TCGA.AA.A01Q.01A	10	95069738	98762444	316	0.1487	NEUTRAL	NA	35	"ACSM6,ALDH18A1,BLNK,C10orf12,C10orf131,CC2D2B,CCNJ,CEP55,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,FFAR4,FRA10AC1,HELLS,LCOR,LGI1,MYOF,NOC3L,OPALIN,PDE6C,PDLIM1,PIK3AP1,PLCE1,RBP4,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,ZNF518A"
TCGA.CK.4948.01B	10	95069738	135440021	3202	-0.0939	NEUTRAL	NA	290	Too-Many
TCGA.AG.3891.01A	10	95085536	95351749	55	0.1206	NEUTRAL	NA	4	"CEP55,FFAR4,MYOF,RBP4"
TCGA.AG.3909.01A	10	95095630	95121160	12	-0.1517	NEUTRAL	NA	1	MYOF
TCGA.CK.5914.01A	10	95115388	96098316	123	0.1688	NEUTRAL	NA	10	"CEP55,FFAR4,FRA10AC1,LGI1,MYOF,NOC3L,PDE6C,PLCE1,RBP4,SLC35G1"
TCGA.AG.3909.01A	10	95123671	95216565	24	0.3014	NEUTRAL	NA	1	MYOF
TCGA.AA.A010.01A	10	95161136	96072964	96	-0.0352	NEUTRAL	NA	9	"CEP55,FFAR4,FRA10AC1,LGI1,MYOF,PDE6C,PLCE1,RBP4,SLC35G1"
TCGA.AA.3864	10	95233662	97523779	689	0.1136	NEUTRAL	NA	22	"ACSM6,ALDH18A1,CEP55,CYP2C18,CYP2C19,CYP2C8,CYP2C9,ENTPD1,FFAR4,FRA10AC1,HELLS,LGI1,MYOF,NOC3L,PDE6C,PDLIM1,PLCE1,RBP4,SLC35G1,SORBS1,TBC1D12,TCTN3"
TCGA.AA.3819	10	95233662	135434550	14586	0.007	NEUTRAL	NA	289	Too-Many
TCGA.AG.3909.01A	10	95241806	95326508	10	-0.2711	NEUTRAL	NA	3	"CEP55,FFAR4,MYOF"
TCGA.AA.A00D.01A	10	95278592	96306095	83	0.0396	NEUTRAL	NA	11	"CEP55,FFAR4,FRA10AC1,HELLS,LGI1,NOC3L,PDE6C,PLCE1,RBP4,SLC35G1,TBC1D12"
TCGA.AG.A023.01A	10	95287660	99205442	429	-0.028	NEUTRAL	NA	40	"ACSM6,ALDH18A1,ARHGAP19,BLNK,C10orf12,C10orf131,CC2D2B,CCNJ,CEP55,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,EXOSC1,FFAR4,FRA10AC1,FRAT1,FRAT2,HELLS,LCOR,LGI1,NOC3L,OPALIN,PDE6C,PDLIM1,PGAM1,PIK3AP1,PLCE1,RBP4,RRP12,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,ZNF518A"
TCGA.AG.4009.01A	10	95346960	95381649	9	-0.4981	NEUTRAL	NA	3	"FFAR4,PDE6C,RBP4"
TCGA.AG.3891.01A	10	95353543	95372501	5	-0.4618	NEUTRAL	NA	2	"PDE6C,RBP4"
TCGA.AG.3909.01A	10	95372501	95441190	23	0.1494	NEUTRAL	NA	2	"FRA10AC1,PDE6C"
TCGA.AG.3891.01A	10	95380338	99186013	418	-0.0278	NEUTRAL	NA	35	"ACSM6,ALDH18A1,ARHGAP19,BLNK,C10orf12,C10orf131,CC2D2B,CCNJ,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,FRA10AC1,FRAT1,FRAT2,HELLS,LCOR,LGI1,NOC3L,OPALIN,PDE6C,PDLIM1,PIK3AP1,PLCE1,RRP12,SLC35G1,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,ZNF518A"
TCGA.AG.4009.01A	10	95385273	97775921	237	0.0322	NEUTRAL	NA	20	"ACSM6,ALDH18A1,C10orf131,CC2D2B,CYP2C18,CYP2C19,CYP2C8,CYP2C9,ENTPD1,FRA10AC1,HELLS,LGI1,NOC3L,PDE6C,PDLIM1,PLCE1,SLC35G1,SORBS1,TBC1D12,TCTN3"
TCGA.AA.A00N.01A	10	95386338	95441190	19	0.3707	NEUTRAL	NA	2	"FRA10AC1,PDE6C"
TCGA.AA.3850	10	95402972	95483381	41	0.04805	NEUTRAL	NA	2	"FRA10AC1,PDE6C"
TCGA.AG.A01W.01A	10	95411748	96224375	79	-0.2193	NEUTRAL	NA	7	"FRA10AC1,LGI1,NOC3L,PDE6C,PLCE1,SLC35G1,TBC1D12"
TCGA.AA.3982	10	95418101	96465615	278	0.2634	NEUTRAL	NA	9	"CYP2C18,FRA10AC1,HELLS,LGI1,NOC3L,PDE6C,PLCE1,SLC35G1,TBC1D12"
TCGA.AA.3941	10	95418463	95490047	33	-0.1898	NEUTRAL	NA	2	"FRA10AC1,PDE6C"
TCGA.CA.5254	10	95433123	95509443	31	0.1768	NEUTRAL	NA	1	FRA10AC1
TCGA.CL.4957	10	95480266	122880680	9248	-0.0006	NEUTRAL	NA	205	Too-Many
TCGA.AA.3941	10	95490572	95771828	107	0.2329	NEUTRAL	NA	3	"LGI1,PLCE1,SLC35G1"
TCGA.AA.3850	10	95499323	95771828	106	0.07185	NEUTRAL	NA	3	"LGI1,PLCE1,SLC35G1"
TCGA.CA.5254	10	95511349	96902152	318	-0.1599	NEUTRAL	NA	10	"CYP2C18,CYP2C19,CYP2C8,CYP2C9,HELLS,LGI1,NOC3L,PLCE1,SLC35G1,TBC1D12"
TCGA.AG.3909.01A	10	95517875	95556736	7	0.1774	NEUTRAL	NA	1	LGI1
TCGA.AA.3941	10	95787976	96407510	126	0.2859	NEUTRAL	NA	4	"HELLS,NOC3L,PLCE1,TBC1D12"
TCGA.AG.3909.01A	10	95790754	96094367	34	0.2783	NEUTRAL	NA	2	"NOC3L,PLCE1"
TCGA.AA.3850	10	95804581	96407510	121	0.19515	NEUTRAL	NA	4	"HELLS,NOC3L,PLCE1,TBC1D12"
TCGA.AZ.4684.01A	10	95930915	96356604	77	-0.1289	NEUTRAL	NA	4	"HELLS,NOC3L,PLCE1,TBC1D12"
TCGA.AA.A00N.01A	10	96093887	96106135	10	0.1989	NEUTRAL	NA	1	NOC3L
TCGA.AG.3909.01A	10	96097482	96106135	8	-0.455	NEUTRAL	NA	1	NOC3L
TCGA.AG.A01N.01A	10	96101403	101985630	631	-0.1447	NEUTRAL	NA	63	"ABCC2,ACSM6,ALDH18A1,ANKRD2,ARHGAP19,AVPI1,BLNK,C10orf12,C10orf131,C10orf62,CC2D2B,CCNJ,CHUK,CNNM1,COX15,CPN1,CRTAC1,CUTC,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNMBP,DNTT,ENTPD1,ENTPD7,ERLIN1,EXOSC1,FRAT1,FRAT2,GOLGA7B,GOT1,HELLS,HOGA1,HPS1,HPSE2,LCOR,LOXL4,MARVELD1,MMS19,MORN4,NKX2-3,NOC3L,OPALIN,PDLIM1,PGAM1,PI4K2A,PIK3AP1,PYROXD2,R3HCC1L,RRP12,SFRP5,SLC25A28,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,UBTD1,ZDHHC16,ZFYVE27,ZNF518A"
TCGA.AA.A01F.01A	10	96116894	101464200	513	0.0968	NEUTRAL	NA	56	"ACSM6,ALDH18A1,ANKRD2,ARHGAP19,AVPI1,BLNK,C10orf12,C10orf131,C10orf62,CC2D2B,CCNJ,CNNM1,CRTAC1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DNTT,ENTPD1,ENTPD7,EXOSC1,FRAT1,FRAT2,GOLGA7B,GOT1,HELLS,HOGA1,HPS1,HPSE2,LCOR,LOXL4,MARVELD1,MMS19,MORN4,NKX2-3,NOC3L,OPALIN,PDLIM1,PGAM1,PI4K2A,PIK3AP1,PYROXD2,R3HCC1L,RRP12,SFRP5,SLC25A28,SLIT1,SORBS1,TBC1D12,TCTN3,TLL2,TM9SF3,UBTD1,ZDHHC16,ZFYVE27,ZNF518A"
TCGA.AA.A00N.01A	10	96162324	96234384	3	-0.3373	NEUTRAL	NA	1	TBC1D12
TCGA.AG.3909.01A	10	96162324	96361236	30	-0.3007	NEUTRAL	NA	2	"HELLS,TBC1D12"
TCGA.AG.A01W.01A	10	96331067	97090986	75	-0.1361	NEUTRAL	NA	8	"ACSM6,CYP2C18,CYP2C19,CYP2C8,CYP2C9,HELLS,PDLIM1,SORBS1"
TCGA.AA.A00D.01A	10	96333678	106214131	1225	0.034	NEUTRAL	NA	133	Too-Many
TCGA.AA.A010.01A	10	96353209	97082456	60	-0.3759	NEUTRAL	NA	8	"ACSM6,CYP2C18,CYP2C19,CYP2C8,CYP2C9,HELLS,PDLIM1,SORBS1"
TCGA.AZ.4684.01A	10	96361236	96998274	48	0.2736	NEUTRAL	NA	7	"ACSM6,CYP2C18,CYP2C19,CYP2C8,CYP2C9,HELLS,PDLIM1"
TCGA.AA.3941	10	96441299	96936656	89	-0.3969	NEUTRAL	NA	4	"CYP2C18,CYP2C19,CYP2C8,CYP2C9"
TCGA.AG.3909.01A	10	96443525	97380741	83	0.1563	NEUTRAL	NA	8	"ACSM6,ALDH18A1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,PDLIM1,SORBS1"
TCGA.AA.3982	10	96466823	96972888	90	-0.0823	NEUTRAL	NA	5	"ACSM6,CYP2C18,CYP2C19,CYP2C8,CYP2C9"
TCGA.CK.5914.01A	10	96522431	96580206	5	-0.0785	NEUTRAL	NA	1	CYP2C19
TCGA.CK.5914.01A	10	96796833	97396803	70	0.2692	NEUTRAL	NA	5	"ACSM6,ALDH18A1,CYP2C8,PDLIM1,SORBS1"
TCGA.G4.6297	10	96797823	135434550	14167	-0.1478	NEUTRAL	NA	274	Too-Many
TCGA.D5.6536	10	96861569	97206618	125	0.0055	NEUTRAL	NA	3	"ACSM6,PDLIM1,SORBS1"
TCGA.CA.5254	10	96903155	97177753	105	0.1807	NEUTRAL	NA	3	"ACSM6,PDLIM1,SORBS1"
TCGA.AA.3941	10	96945534	100378223	1193	0.3569	NEUTRAL	NA	44	"ACSM6,ALDH18A1,ANKRD2,ARHGAP19,AVPI1,BLNK,C10orf12,C10orf131,C10orf62,CC2D2B,CCNJ,CRTAC1,DNTT,ENTPD1,EXOSC1,FRAT1,FRAT2,GOLGA7B,HOGA1,HPS1,HPSE2,LCOR,LOXL4,MARVELD1,MMS19,MORN4,OPALIN,PDLIM1,PGAM1,PI4K2A,PIK3AP1,PYROXD2,R3HCC1L,RRP12,SFRP5,SLIT1,SORBS1,TCTN3,TLL2,TM9SF3,UBTD1,ZDHHC16,ZFYVE27,ZNF518A"
TCGA.AA.3850	10	96945534	100409976	1210	0.26395	NEUTRAL	NA	44	"ACSM6,ALDH18A1,ANKRD2,ARHGAP19,AVPI1,BLNK,C10orf12,C10orf131,C10orf62,CC2D2B,CCNJ,CRTAC1,DNTT,ENTPD1,EXOSC1,FRAT1,FRAT2,GOLGA7B,HOGA1,HPS1,HPSE2,LCOR,LOXL4,MARVELD1,MMS19,MORN4,OPALIN,PDLIM1,PGAM1,PI4K2A,PIK3AP1,PYROXD2,R3HCC1L,RRP12,SFRP5,SLIT1,SORBS1,TCTN3,TLL2,TM9SF3,UBTD1,ZDHHC16,ZFYVE27,ZNF518A"
TCGA.AA.A01C.01A	10	96979602	99227968	285	-0.0382	NEUTRAL	NA	27	"ACSM6,ALDH18A1,ARHGAP19,BLNK,C10orf12,C10orf131,CC2D2B,CCNJ,DNTT,ENTPD1,EXOSC1,FRAT1,FRAT2,LCOR,MMS19,OPALIN,PDLIM1,PGAM1,PIK3AP1,RRP12,SLIT1,SORBS1,TCTN3,TLL2,TM9SF3,ZDHHC16,ZNF518A"
TCGA.AZ.4684.01A	10	97006925	97817536	97	-0.1409	NEUTRAL	NA	8	"ALDH18A1,C10orf131,CC2D2B,CCNJ,ENTPD1,PDLIM1,SORBS1,TCTN3"
TCGA.AA.A010.01A	10	97127335	97143713	6	-0.3243	NEUTRAL	NA	1	SORBS1
TCGA.AG.A01W.01A	10	97133733	97433223	33	-0.3656	NEUTRAL	NA	3	"ALDH18A1,SORBS1,TCTN3"
TCGA.AA.A010.01A	10	97197178	97402717	16	0.201	NEUTRAL	NA	2	"ALDH18A1,SORBS1"
TCGA.CA.5254	10	97325294	97993064	199	0.2095	NEUTRAL	NA	8	"ALDH18A1,BLNK,C10orf131,CC2D2B,CCNJ,ENTPD1,TCTN3,ZNF518A"
TCGA.AY.4071	10	97371902	135434550	13848	-0.0176	NEUTRAL	NA	270	Too-Many
TCGA.AA.A00N.01A	10	97385089	97452649	20	-0.2911	NEUTRAL	NA	2	"ALDH18A1,TCTN3"
TCGA.AG.3909.01A	10	97385089	97817536	44	-0.1696	NEUTRAL	NA	6	"ALDH18A1,C10orf131,CC2D2B,CCNJ,ENTPD1,TCTN3"
TCGA.AA.A00N.01A	10	97453059	97779417	26	0.3024	NEUTRAL	NA	4	"C10orf131,CC2D2B,ENTPD1,TCTN3"
TCGA.AG.A01W.01A	10	97461633	97909865	33	-0.1865	NEUTRAL	NA	5	"C10orf131,CC2D2B,CCNJ,ENTPD1,ZNF518A"
TCGA.CK.5914.01A	10	97471661	97967540	46	-0.0192	NEUTRAL	NA	6	"BLNK,C10orf131,CC2D2B,CCNJ,ENTPD1,ZNF518A"
TCGA.AA.3864	10	97542451	98282159	279	0.0552	NEUTRAL	NA	10	"BLNK,C10orf131,CC2D2B,CCNJ,DNTT,ENTPD1,OPALIN,TLL2,TM9SF3,ZNF518A"
TCGA.AA.3982	10	97550404	97854870	62	0.3016	NEUTRAL	NA	4	"C10orf131,CC2D2B,CCNJ,ENTPD1"
TCGA.AA.A010.01A	10	97582952	97792442	27	-0.447	NEUTRAL	NA	3	"C10orf131,CC2D2B,ENTPD1"
TCGA.AA.A00L.01A	10	97582952	99202971	196	0.0985	NEUTRAL	NA	20	"ARHGAP19,BLNK,C10orf12,C10orf131,CC2D2B,CCNJ,DNTT,ENTPD1,EXOSC1,FRAT1,FRAT2,LCOR,OPALIN,PGAM1,PIK3AP1,RRP12,SLIT1,TLL2,TM9SF3,ZNF518A"
TCGA.D5.6536	10	97590825	99947770	746	-0.019	NEUTRAL	NA	35	"ANKRD2,ARHGAP19,AVPI1,BLNK,C10orf12,C10orf131,C10orf62,CC2D2B,CCNJ,CRTAC1,DNTT,ENTPD1,EXOSC1,FRAT1,FRAT2,GOLGA7B,HOGA1,LCOR,MARVELD1,MMS19,MORN4,OPALIN,PGAM1,PI4K2A,PIK3AP1,R3HCC1L,RRP12,SFRP5,SLIT1,TLL2,TM9SF3,UBTD1,ZDHHC16,ZFYVE27,ZNF518A"
TCGA.AG.4009.01A	10	97778922	97817536	8	-0.4285	NEUTRAL	NA	2	"CC2D2B,CCNJ"
TCGA.AA.3982	10	97884730	98282159	212	0.3396	NEUTRAL	NA	6	"BLNK,DNTT,OPALIN,TLL2,TM9SF3,ZNF518A"
TCGA.AG.4009.01A	10	97916103	98114980	36	0.0953	NEUTRAL	NA	4	"BLNK,DNTT,OPALIN,ZNF518A"
TCGA.AG.3909.01A	10	97916103	98240054	58	0.3028	NEUTRAL	NA	5	"BLNK,DNTT,OPALIN,TLL2,ZNF518A"
TCGA.AG.A01W.01A	10	97941683	98123292	38	-0.4725	NEUTRAL	NA	3	"BLNK,DNTT,OPALIN"
TCGA.AA.3509.01A	10	97951682	98273221	56	-0.1424	NEUTRAL	NA	4	"BLNK,DNTT,OPALIN,TLL2"
TCGA.AZ.4684.01A	10	97951682	98273221	56	-0.1583	NEUTRAL	NA	4	"BLNK,DNTT,OPALIN,TLL2"
TCGA.CA.5254	10	97994624	98238297	134	-0.1848	NEUTRAL	NA	4	"BLNK,DNTT,OPALIN,TLL2"
TCGA.AA.A010.01A	10	98078069	98114980	16	-0.3083	NEUTRAL	NA	2	"DNTT,OPALIN"
TCGA.AG.4009.01A	10	98118555	98164942	13	0.3486	NEUTRAL	NA	2	"OPALIN,TLL2"
TCGA.AG.A01W.01A	10	98144943	98302628	22	-0.1701	NEUTRAL	NA	2	"TLL2,TM9SF3"
TCGA.AG.4009.01A	10	98170065	98312648	18	0.0383	NEUTRAL	NA	2	"TLL2,TM9SF3"
TCGA.AA.A010.01A	10	98172900	98281956	9	0.2304	NEUTRAL	NA	2	"TLL2,TM9SF3"
TCGA.CK.5914.01A	10	98205789	98355263	17	-0.0385	NEUTRAL	NA	3	"PIK3AP1,TLL2,TM9SF3"
TCGA.CA.5254	10	98238594	99898132	486	0.1857	NEUTRAL	NA	27	"ANKRD2,ARHGAP19,AVPI1,C10orf12,C10orf62,CRTAC1,EXOSC1,FRAT1,FRAT2,GOLGA7B,HOGA1,LCOR,MARVELD1,MMS19,MORN4,PGAM1,PI4K2A,PIK3AP1,R3HCC1L,RRP12,SFRP5,SLIT1,TLL2,TM9SF3,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AG.3909.01A	10	98273221	98361989	16	-0.3666	NEUTRAL	NA	3	"PIK3AP1,TLL2,TM9SF3"
TCGA.AA.3864	10	98289001	100557306	733	0.1672	NEUTRAL	NA	30	"ANKRD2,ARHGAP19,AVPI1,C10orf12,C10orf62,CRTAC1,EXOSC1,FRAT1,FRAT2,GOLGA7B,HOGA1,HPS1,HPSE2,LCOR,LOXL4,MARVELD1,MMS19,MORN4,PGAM1,PI4K2A,PIK3AP1,PYROXD2,R3HCC1L,RRP12,SFRP5,SLIT1,TM9SF3,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AA.3982	10	98289249	98365911	18	0.1767	NEUTRAL	NA	2	"PIK3AP1,TM9SF3"
TCGA.AZ.4684.01A	10	98290230	99150153	112	-0.1101	NEUTRAL	NA	9	"ARHGAP19,C10orf12,FRAT1,FRAT2,LCOR,PIK3AP1,RRP12,SLIT1,TM9SF3"
TCGA.AA.3509.01A	10	98290230	112650277	1305	-0.042	NEUTRAL	NA	124	Too-Many
TCGA.AG.3611.01A	10	98319354	98380061	10	-0.5026	NEUTRAL	NA	2	"PIK3AP1,TM9SF3"
TCGA.AG.4009.01A	10	98363695	98383171	5	-0.1639	NEUTRAL	NA	1	PIK3AP1
TCGA.AA.A010.01A	10	98376333	98480046	13	0.3066	NEUTRAL	NA	1	PIK3AP1
TCGA.AG.3611.01A	10	98383171	102107174	438	-0.1703	NEUTRAL	NA	45	"ABCC2,ANKRD2,ARHGAP19,AVPI1,BLOC1S2,C10orf12,C10orf62,CHUK,CNNM1,COX15,CPN1,CRTAC1,CUTC,CWF19L1,DNMBP,ENTPD7,ERLIN1,EXOSC1,FRAT1,FRAT2,GOLGA7B,GOT1,HOGA1,HPS1,HPSE2,LCOR,LOXL4,MARVELD1,MMS19,MORN4,NKX2-3,PGAM1,PI4K2A,PIK3AP1,PKD2L1,PYROXD2,R3HCC1L,RRP12,SCD,SFRP5,SLC25A28,SLIT1,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AG.4009.01A	10	98386427	98469302	9	0.1908	NEUTRAL	NA	1	PIK3AP1
TCGA.CK.5914.01A	10	98410954	98780965	23	-0.0262	NEUTRAL	NA	4	"C10orf12,LCOR,PIK3AP1,SLIT1"
TCGA.AG.3909.01A	10	98469302	98770703	15	-0.3146	NEUTRAL	NA	4	"C10orf12,LCOR,PIK3AP1,SLIT1"
TCGA.AG.A01W.01A	10	98578346	98781289	22	-0.2404	NEUTRAL	NA	3	"C10orf12,LCOR,SLIT1"
TCGA.AG.4009.01A	10	98715149	99160040	76	0.1695	NEUTRAL	NA	7	"ARHGAP19,C10orf12,FRAT1,FRAT2,LCOR,RRP12,SLIT1"
TCGA.AA.A01Q.01A	10	98763808	98945188	33	-0.3029	NEUTRAL	NA	1	SLIT1
TCGA.CK.5914.01A	10	98790450	98917524	22	-0.4336	NEUTRAL	NA	1	SLIT1
TCGA.AG.3909.01A	10	98917524	99025570	14	-0.1811	NEUTRAL	NA	2	"ARHGAP19,SLIT1"
TCGA.AA.A00N.01A	10	98917524	99093600	20	-0.0144	NEUTRAL	NA	4	"ARHGAP19,FRAT1,FRAT2,SLIT1"
TCGA.CK.5914.01A	10	98923076	99186013	50	0.2087	NEUTRAL	NA	5	"ARHGAP19,FRAT1,FRAT2,RRP12,SLIT1"
TCGA.CM.6165.01A	10	98945188	99030286	13	-0.3089	NEUTRAL	NA	2	"ARHGAP19,SLIT1"
TCGA.A6.6650	10	98964401	121116211	6856	-0.4792	NEUTRAL	NA	168	Too-Many
TCGA.AA.A010.01A	10	98985788	99123539	21	-0.3907	NEUTRAL	NA	4	"ARHGAP19,FRAT1,FRAT2,RRP12"
TCGA.CM.6165.01A	10	99052255	100157051	178	-0.0033	NEUTRAL	NA	23	"ANKRD2,ARHGAP19,AVPI1,C10orf62,CRTAC1,EXOSC1,FRAT1,FRAT2,GOLGA7B,HOGA1,LOXL4,MARVELD1,MMS19,MORN4,PGAM1,PI4K2A,PYROXD2,R3HCC1L,RRP12,SFRP5,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AA.A01Q.01A	10	99079161	99144872	25	0.0654	NEUTRAL	NA	3	"FRAT1,FRAT2,RRP12"
TCGA.AG.A015.01A	10	99130452	104139571	624	-0.2226	NEUTRAL	NA	69	"ABCC2,ANKRD2,AVPI1,BLOC1S2,BTRC,C10orf2,C10orf62,C10orf76,CHUK,CNNM1,COX15,CPN1,CRTAC1,CUTC,CWF19L1,DNMBP,DPCD,ELOVL3,ENTPD7,ERLIN1,EXOSC1,FAM178A,FBXW4,FGF8,GBF1,GOLGA7B,GOT1,HIF1AN,HOGA1,HPS1,HPS6,HPSE2,KAZALD1,KCNIP2,LBX1,LDB1,LOXL4,LZTS2,MARVELD1,MGEA5,MMS19,MORN4,MRPL43,NDUFB8,NKX2-3,NOLC1,NPM3,PAX2,PDZD7,PGAM1,PI4K2A,PITX3,PKD2L1,POLL,PPRC1,PYROXD2,R3HCC1L,RRP12,SCD,SEC31B,SEMA4G,SFRP5,SFXN3,SLC25A28,TLX1,UBTD1,WNT8B,ZDHHC16,ZFYVE27"
TCGA.AG.A032.01A	10	99140514	105199998	777	-0.0948	NEUTRAL	NA	92	"ABCC2,ACTR1A,ANKRD2,ARL3,AS3MT,AVPI1,BLOC1S2,BTRC,C10orf2,C10orf32,C10orf62,C10orf76,C10orf95,CHUK,CNNM1,CNNM2,COX15,CPN1,CRTAC1,CUEDC2,CUTC,CWF19L1,CYP17A1,DNMBP,DPCD,ELOVL3,ENTPD7,ERLIN1,EXOSC1,FAM178A,FBXL15,FBXW4,FGF8,GBF1,GOLGA7B,GOT1,HIF1AN,HOGA1,HPS1,HPS6,HPSE2,INA,KAZALD1,KCNIP2,LBX1,LDB1,LOXL4,LZTS2,MARVELD1,MGEA5,MMS19,MORN4,MRPL43,NDUFB8,NFKB2,NKX2-3,NOLC1,NPM3,NT5C2,PAX2,PCGF6,PDCD11,PDZD7,PGAM1,PI4K2A,PITX3,PKD2L1,POLL,PPRC1,PSD,PYROXD2,R3HCC1L,RPEL1,RRP12,SCD,SEC31B,SEMA4G,SFRP5,SFXN2,SFXN3,SLC25A28,SUFU,TAF5,TLX1,TMEM180,TRIM8,UBTD1,USMG5,WBP1L,WNT8B,ZDHHC16,ZFYVE27"
TCGA.AZ.4684.01A	10	99150445	99215307	24	-0.4967	NEUTRAL	NA	4	"EXOSC1,PGAM1,RRP12,ZDHHC16"
TCGA.AG.4009.01A	10	99160799	99211383	14	-0.3875	NEUTRAL	NA	4	"EXOSC1,PGAM1,RRP12,ZDHHC16"
TCGA.AG.A01W.01A	10	99180078	99672965	105	-0.4981	NEUTRAL	NA	16	"ANKRD2,AVPI1,C10orf62,CRTAC1,EXOSC1,GOLGA7B,HOGA1,MARVELD1,MMS19,MORN4,PGAM1,PI4K2A,SFRP5,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AG.3906.01A	10	99200871	101578516	220	0.127	NEUTRAL	NA	28	"ABCC2,ANKRD2,AVPI1,C10orf62,CNNM1,COX15,CRTAC1,CUTC,ENTPD7,EXOSC1,GOLGA7B,GOT1,HOGA1,HPS1,HPSE2,LOXL4,MARVELD1,MMS19,MORN4,NKX2-3,PI4K2A,PYROXD2,R3HCC1L,SFRP5,SLC25A28,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AA.A010.01A	10	99202971	99220381	15	0.1759	NEUTRAL	NA	3	"EXOSC1,MMS19,ZDHHC16"
TCGA.AA.A00L.01A	10	99205442	99214415	7	-0.3681	NEUTRAL	NA	2	"EXOSC1,ZDHHC16"
TCGA.AG.3891.01A	10	99205442	99238042	31	0.2122	NEUTRAL	NA	3	"EXOSC1,MMS19,ZDHHC16"
TCGA.AA.A00F.01A	10	99205442	101567101	220	-0.2718	NEUTRAL	NA	28	"ABCC2,ANKRD2,AVPI1,C10orf62,CNNM1,COX15,CRTAC1,CUTC,ENTPD7,EXOSC1,GOLGA7B,GOT1,HOGA1,HPS1,HPSE2,LOXL4,MARVELD1,MMS19,MORN4,NKX2-3,PI4K2A,PYROXD2,R3HCC1L,SFRP5,SLC25A28,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AA.A01Q.01A	10	99205442	102732618	418	0.0523	NEUTRAL	NA	43	"ABCC2,ANKRD2,AVPI1,BLOC1S2,C10orf62,CHUK,CNNM1,COX15,CPN1,CRTAC1,CUTC,CWF19L1,DNMBP,ENTPD7,ERLIN1,EXOSC1,FAM178A,GOLGA7B,GOT1,HIF1AN,HOGA1,HPS1,HPSE2,LOXL4,MARVELD1,MMS19,MORN4,NDUFB8,NKX2-3,PAX2,PI4K2A,PKD2L1,PYROXD2,R3HCC1L,SCD,SEC31B,SEMA4G,SFRP5,SLC25A28,UBTD1,WNT8B,ZDHHC16,ZFYVE27"
TCGA.AG.4009.01A	10	99211879	99642477	81	-0.0266	NEUTRAL	NA	14	"ANKRD2,AVPI1,C10orf62,CRTAC1,GOLGA7B,HOGA1,MARVELD1,MMS19,MORN4,PI4K2A,SFRP5,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AA.A00L.01A	10	99215307	101590423	224	0.0868	NEUTRAL	NA	27	"ABCC2,ANKRD2,AVPI1,C10orf62,CNNM1,COX15,CRTAC1,CUTC,ENTPD7,GOLGA7B,GOT1,HOGA1,HPS1,HPSE2,LOXL4,MARVELD1,MMS19,MORN4,NKX2-3,PI4K2A,PYROXD2,R3HCC1L,SFRP5,SLC25A28,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AA.A00N.01A	10	99216484	99258896	28	-0.2775	NEUTRAL	NA	3	"MMS19,UBTD1,ZDHHC16"
TCGA.AG.3909.01A	10	99216484	99642477	76	-0.1665	NEUTRAL	NA	14	"ANKRD2,AVPI1,C10orf62,CRTAC1,GOLGA7B,HOGA1,MARVELD1,MMS19,MORN4,PI4K2A,SFRP5,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AZ.4684.01A	10	99216484	115614590	1348	-0.1115	NEUTRAL	NA	128	Too-Many
TCGA.CK.5914.01A	10	99218436	99337955	32	0.1951	NEUTRAL	NA	3	"ANKRD2,MMS19,UBTD1"
TCGA.AG.A00C.01A	10	99219771	99342314	27	0.0905	NEUTRAL	NA	3	"ANKRD2,MMS19,UBTD1"
TCGA.AA.A01K.01A	10	99220381	101590017	197	0.2528	NEUTRAL	NA	26	"ABCC2,ANKRD2,AVPI1,C10orf62,CNNM1,COX15,CRTAC1,CUTC,ENTPD7,GOLGA7B,GOT1,HOGA1,HPS1,HPSE2,LOXL4,MARVELD1,MMS19,MORN4,NKX2-3,PI4K2A,PYROXD2,R3HCC1L,SFRP5,SLC25A28,UBTD1,ZFYVE27"
TCGA.AG.A023.01A	10	99220381	128209777	2046	-0.0992	NEUTRAL	NA	209	Too-Many
TCGA.AA.A010.01A	10	99221204	99227223	8	-0.2587	NEUTRAL	NA	1	MMS19
TCGA.AA.A02H.01A	10	99236392	99342314	12	-0.1178	NEUTRAL	NA	3	"ANKRD2,MMS19,UBTD1"
TCGA.AA.A01C.01A	10	99236392	135440021	2322	-0.0339	NEUTRAL	NA	248	Too-Many
TCGA.AG.3891.01A	10	99240611	99332434	5	-0.3259	NEUTRAL	NA	3	"ANKRD2,MMS19,UBTD1"
TCGA.AA.3989	10	99312537	103368653	1192	-0.1835	NEUTRAL	NA	51	"ABCC2,ANKRD2,AVPI1,BLOC1S2,BTRC,C10orf2,C10orf62,CHUK,CNNM1,COX15,CPN1,CRTAC1,CUTC,CWF19L1,DNMBP,DPCD,ENTPD7,ERLIN1,FAM178A,GOLGA7B,GOT1,HIF1AN,HOGA1,HPS1,HPSE2,KAZALD1,LBX1,LOXL4,LZTS2,MARVELD1,MORN4,MRPL43,NDUFB8,NKX2-3,PAX2,PDZD7,PI4K2A,PKD2L1,POLL,PYROXD2,R3HCC1L,SCD,SEC31B,SEMA4G,SFRP5,SFXN3,SLC25A28,TLX1,UBTD1,WNT8B,ZFYVE27"
TCGA.AG.3891.01A	10	99337955	101590017	191	-0.0132	NEUTRAL	NA	24	"ABCC2,ANKRD2,AVPI1,C10orf62,CNNM1,COX15,CRTAC1,CUTC,ENTPD7,GOLGA7B,GOT1,HOGA1,HPS1,HPSE2,LOXL4,MARVELD1,MORN4,NKX2-3,PI4K2A,PYROXD2,R3HCC1L,SFRP5,SLC25A28,ZFYVE27"
TCGA.CK.5914.01A	10	99340584	99639439	48	-0.2432	NEUTRAL	NA	11	"ANKRD2,AVPI1,C10orf62,CRTAC1,GOLGA7B,HOGA1,MARVELD1,MORN4,PI4K2A,SFRP5,ZFYVE27"
TCGA.AG.A00C.01A	10	99343282	99371215	9	-0.3155	NEUTRAL	NA	3	"ANKRD2,C10orf62,HOGA1"
TCGA.AA.A02H.01A	10	99358480	99426751	17	-0.1108	NEUTRAL	NA	3	"HOGA1,MORN4,PI4K2A"
TCGA.AA.A00J.01A	10	99359399	135373539	2212	0.0639	NEUTRAL	NA	243	Too-Many
TCGA.AA.A010.01A	10	99375982	99400473	5	-0.0427	NEUTRAL	NA	2	"MORN4,PI4K2A"
TCGA.AA.A00N.01A	10	99375982	99639955	36	-0.3012	NEUTRAL	NA	8	"AVPI1,CRTAC1,GOLGA7B,MARVELD1,MORN4,PI4K2A,SFRP5,ZFYVE27"
TCGA.AG.A00C.01A	10	99375982	99642477	33	0.1263	NEUTRAL	NA	8	"AVPI1,CRTAC1,GOLGA7B,MARVELD1,MORN4,PI4K2A,SFRP5,ZFYVE27"
TCGA.A6.3808.01A	10	99379258	101590017	183	0.0847	NEUTRAL	NA	21	"ABCC2,AVPI1,CNNM1,COX15,CRTAC1,CUTC,ENTPD7,GOLGA7B,GOT1,HPS1,HPSE2,LOXL4,MARVELD1,MORN4,NKX2-3,PI4K2A,PYROXD2,R3HCC1L,SFRP5,SLC25A28,ZFYVE27"
TCGA.AA.3862.01A	10	99379258	105752339	814	-0.0314	NEUTRAL	NA	90	"ABCC2,ACTR1A,ARL3,AS3MT,AVPI1,BLOC1S2,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CHUK,CNNM1,CNNM2,COX15,CPN1,CRTAC1,CUEDC2,CUTC,CWF19L1,CYP17A1,DNMBP,DPCD,ELOVL3,ENTPD7,ERLIN1,FAM178A,FBXL15,FBXW4,FGF8,GBF1,GOLGA7B,GOT1,HIF1AN,HPS1,HPS6,HPSE2,INA,KAZALD1,KCNIP2,LBX1,LDB1,LOXL4,LZTS2,MARVELD1,MGEA5,MORN4,MRPL43,NDUFB8,NEURL1,NFKB2,NKX2-3,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDZD7,PI4K2A,PITX3,PKD2L1,POLL,PPRC1,PSD,PYROXD2,R3HCC1L,RPEL1,SCD,SEC31B,SEMA4G,SFRP5,SFXN2,SFXN3,SH3PXD2A,SLC25A28,SLK,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L,WNT8B,ZFYVE27"
TCGA.AA.A02H.01A	10	99433299	101474316	121	0.1734	NEUTRAL	NA	18	"AVPI1,CNNM1,COX15,CRTAC1,ENTPD7,GOLGA7B,GOT1,HPS1,HPSE2,LOXL4,MARVELD1,NKX2-3,PI4K2A,PYROXD2,R3HCC1L,SFRP5,SLC25A28,ZFYVE27"
TCGA.AA.3860	10	99461016	135434550	13274	0.0086	NEUTRAL	NA	239	Too-Many
TCGA.AA.A010.01A	10	99625264	99642477	5	-0.0698	NEUTRAL	NA	2	"CRTAC1,GOLGA7B"
TCGA.CK.5914.01A	10	99639955	100022460	34	0.1816	NEUTRAL	NA	3	"CRTAC1,LOXL4,R3HCC1L"
TCGA.AG.A00C.01A	10	99655000	101577018	138	-0.1893	NEUTRAL	NA	14	"ABCC2,CNNM1,COX15,CRTAC1,CUTC,ENTPD7,GOT1,HPS1,HPSE2,LOXL4,NKX2-3,PYROXD2,R3HCC1L,SLC25A28"
TCGA.AG.A01W.01A	10	99685889	100008720	19	-0.1292	NEUTRAL	NA	3	"CRTAC1,LOXL4,R3HCC1L"
TCGA.AG.3909.01A	10	99695880	100143491	22	-0.0198	NEUTRAL	NA	4	"CRTAC1,LOXL4,PYROXD2,R3HCC1L"
TCGA.AG.4009.01A	10	99770863	100022460	20	-0.3132	NEUTRAL	NA	3	"CRTAC1,LOXL4,R3HCC1L"
TCGA.AA.A00N.01A	10	99770863	100143491	23	0.0551	NEUTRAL	NA	4	"CRTAC1,LOXL4,PYROXD2,R3HCC1L"
TCGA.AA.3982	10	99829629	100469356	268	0.126	NEUTRAL	NA	5	"HPS1,HPSE2,LOXL4,PYROXD2,R3HCC1L"
TCGA.AG.A01W.01A	10	100010623	100133494	4	-0.3944	NEUTRAL	NA	1	LOXL4
TCGA.AH.6644	10	100047974	135434550	13081	-0.0411	NEUTRAL	NA	232	Too-Many
TCGA.A6.6653	10	100052463	102022811	655	-0.049	NEUTRAL	NA	16	"ABCC2,CHUK,CNNM1,COX15,CPN1,CUTC,CWF19L1,DNMBP,ENTPD7,ERLIN1,GOT1,HPS1,HPSE2,NKX2-3,PYROXD2,SLC25A28"
TCGA.AG.4009.01A	10	100143491	101190154	57	0.1107	NEUTRAL	NA	5	"CNNM1,GOT1,HPS1,HPSE2,PYROXD2"
TCGA.CM.6165.01A	10	100159809	100194979	18	0.2775	NEUTRAL	NA	2	"HPS1,PYROXD2"
TCGA.AG.A01W.01A	10	100160595	101454181	67	-0.2092	NEUTRAL	NA	8	"CNNM1,ENTPD7,GOT1,HPS1,HPSE2,NKX2-3,PYROXD2,SLC25A28"
TCGA.CA.5254	10	100170506	104021108	983	0.2121	NEUTRAL	NA	50	"ABCC2,BLOC1S2,BTRC,C10orf2,C10orf76,CHUK,CNNM1,COX15,CPN1,CUTC,CWF19L1,DNMBP,DPCD,ELOVL3,ENTPD7,ERLIN1,FAM178A,FBXW4,FGF8,GBF1,GOT1,HIF1AN,HPS1,HPS6,HPSE2,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NKX2-3,NOLC1,NPM3,PAX2,PDZD7,PITX3,PKD2L1,POLL,PPRC1,PYROXD2,SCD,SEC31B,SEMA4G,SFXN3,SLC25A28,TLX1,WNT8B"
TCGA.AG.3909.01A	10	100174729	100190856	10	0.1676	NEUTRAL	NA	2	"HPS1,PYROXD2"
TCGA.CK.5914.01A	10	100174729	100221473	18	-0.2538	NEUTRAL	NA	3	"HPS1,HPSE2,PYROXD2"
TCGA.AA.A00N.01A	10	100190279	101117250	21	-0.049	NEUTRAL	NA	3	"CNNM1,HPS1,HPSE2"
TCGA.AA.A010.01A	10	100194979	101190154	35	0.2026	NEUTRAL	NA	4	"CNNM1,GOT1,HPS1,HPSE2"
TCGA.CM.6165.01A	10	100195344	135440021	2527	-0.0276	NEUTRAL	NA	232	Too-Many
TCGA.AG.3909.01A	10	100242345	101166431	27	0.1408	NEUTRAL	NA	3	"CNNM1,GOT1,HPSE2"
TCGA.AA.3941	10	100378910	100810338	133	-0.3806	NEUTRAL	NA	1	HPSE2
TCGA.AA.3850	10	100412734	101030599	155	-0.27815	NEUTRAL	NA	1	HPSE2
TCGA.AA.3982	10	100478679	101229526	194	-0.0968	NEUTRAL	NA	3	"CNNM1,GOT1,HPSE2"
TCGA.AA.3864	10	100561730	100810338	64	-0.251	NEUTRAL	NA	1	HPSE2
TCGA.A6.6782	10	100658952	135434550	12793	0.0185	NEUTRAL	NA	230	Too-Many
TCGA.AA.3972	10	100802379	102533207	491	-0.178	NEUTRAL	NA	22	"ABCC2,BLOC1S2,CHUK,CNNM1,COX15,CPN1,CUTC,CWF19L1,DNMBP,ENTPD7,ERLIN1,GOT1,HIF1AN,HPSE2,NDUFB8,NKX2-3,PAX2,PKD2L1,SCD,SEC31B,SLC25A28,WNT8B"
TCGA.AA.3811	10	100811849	107050571	1629	0.1197	NEUTRAL	NA	86	"ABCC2,ACTR1A,ARL3,AS3MT,BLOC1S2,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CHUK,CNNM1,CNNM2,COL17A1,COX15,CPN1,CUEDC2,CUTC,CWF19L1,CYP17A1,DNMBP,DPCD,ELOVL3,ENTPD7,ERLIN1,FAM178A,FBXL15,FBXW4,FGF8,GBF1,GOT1,GSTO1,GSTO2,HIF1AN,HPS6,HPSE2,INA,ITPRIP,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NEURL1,NFKB2,NKX2-3,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDZD7,PITX3,PKD2L1,POLL,PPRC1,PSD,RPEL1,SCD,SEC31B,SEMA4G,SFR1,SFXN2,SFXN3,SH3PXD2A,SLC25A28,SLK,SORCS3,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L,WNT8B"
TCGA.AA.3864	10	100811849	107690519	1843	0.1115	NEUTRAL	NA	86	"ABCC2,ACTR1A,ARL3,AS3MT,BLOC1S2,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CHUK,CNNM1,CNNM2,COL17A1,COX15,CPN1,CUEDC2,CUTC,CWF19L1,CYP17A1,DNMBP,DPCD,ELOVL3,ENTPD7,ERLIN1,FAM178A,FBXL15,FBXW4,FGF8,GBF1,GOT1,GSTO1,GSTO2,HIF1AN,HPS6,HPSE2,INA,ITPRIP,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NEURL1,NFKB2,NKX2-3,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDZD7,PITX3,PKD2L1,POLL,PPRC1,PSD,RPEL1,SCD,SEC31B,SEMA4G,SFR1,SFXN2,SFXN3,SH3PXD2A,SLC25A28,SLK,SORCS3,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L,WNT8B"
TCGA.CK.5914.01A	10	100903956	101089098	4	-0.3594	NEUTRAL	NA	2	"CNNM1,HPSE2"
TCGA.AA.3850	10	101033306	101204370	58	0.35525	NEUTRAL	NA	2	"CNNM1,GOT1"
TCGA.CK.5914.01A	10	101166431	101577018	56	-0.0197	NEUTRAL	NA	7	"ABCC2,COX15,CUTC,ENTPD7,GOT1,NKX2-3,SLC25A28"
TCGA.AA.3982	10	101230181	101938871	227	0.2563	NEUTRAL	NA	9	"ABCC2,COX15,CPN1,CUTC,DNMBP,ENTPD7,ERLIN1,NKX2-3,SLC25A28"
TCGA.AA.A00N.01A	10	101292857	101572743	53	0.1325	NEUTRAL	NA	6	"ABCC2,COX15,CUTC,ENTPD7,NKX2-3,SLC25A28"
TCGA.AG.4009.01A	10	101419620	101578516	47	0.0539	NEUTRAL	NA	4	"ABCC2,COX15,CUTC,ENTPD7"
TCGA.AG.3909.01A	10	101438968	101478053	14	0.0956	NEUTRAL	NA	2	"COX15,ENTPD7"
TCGA.AA.A01F.01A	10	101473105	101514249	18	-0.1786	NEUTRAL	NA	2	"COX15,CUTC"
TCGA.AA.A02H.01A	10	101476058	102027241	116	-0.2028	NEUTRAL	NA	8	"ABCC2,CHUK,COX15,CPN1,CUTC,CWF19L1,DNMBP,ERLIN1"
TCGA.AA.A01F.01A	10	101515331	135373539	2029	0.1494	NEUTRAL	NA	223	Too-Many
TCGA.AG.3909.01A	10	101544353	101639531	31	0.2134	NEUTRAL	NA	2	"ABCC2,DNMBP"
TCGA.AG.A01W.01A	10	101557779	101645968	27	-0.1964	NEUTRAL	NA	2	"ABCC2,DNMBP"
TCGA.AA.A00F.01A	10	101567831	101667700	30	0.0445	NEUTRAL	NA	2	"ABCC2,DNMBP"
TCGA.A6.3810.01A	10	101577018	101611242	14	-0.2951	NEUTRAL	NA	1	ABCC2
TCGA.AG.A00C.01A	10	101578516	101668671	26	0.3463	NEUTRAL	NA	2	"ABCC2,DNMBP"
TCGA.AA.A01K.01A	10	101590423	104836701	477	-0.2926	NEUTRAL	NA	56	"ABCC2,ACTR1A,ARL3,AS3MT,BLOC1S2,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CHUK,CNNM2,CPN1,CUEDC2,CWF19L1,CYP17A1,DNMBP,DPCD,ELOVL3,ERLIN1,FAM178A,FBXL15,FBXW4,FGF8,GBF1,HIF1AN,HPS6,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NFKB2,NOLC1,NPM3,PAX2,PDZD7,PITX3,PKD2L1,POLL,PPRC1,PSD,SCD,SEC31B,SEMA4G,SFXN2,SFXN3,SUFU,TLX1,TMEM180,TRIM8,WBP1L,WNT8B"
TCGA.AA.A00L.01A	10	101591326	101648533	16	-0.3935	NEUTRAL	NA	2	"ABCC2,DNMBP"
TCGA.AF.3914.01A	10	101601672	102027241	77	-0.2545	NEUTRAL	NA	6	"ABCC2,CHUK,CPN1,CWF19L1,DNMBP,ERLIN1"
TCGA.A6.3808.01A	10	101605334	102259232	125	0.0507	NEUTRAL	NA	11	"ABCC2,BLOC1S2,CHUK,CPN1,CWF19L1,DNMBP,ERLIN1,PKD2L1,SCD,SEC31B,WNT8B"
TCGA.AG.3891.01A	10	101610307	103772515	307	0.1672	NEUTRAL	NA	33	"ABCC2,BLOC1S2,BTRC,C10orf2,C10orf76,CHUK,CPN1,CWF19L1,DNMBP,DPCD,ERLIN1,FAM178A,FBXW4,FGF8,HIF1AN,KAZALD1,KCNIP2,LBX1,LZTS2,MGEA5,MRPL43,NDUFB8,NPM3,PAX2,PDZD7,PKD2L1,POLL,SCD,SEC31B,SEMA4G,SFXN3,TLX1,WNT8B"
TCGA.AG.3906.01A	10	101611242	101938892	36	0.1532	NEUTRAL	NA	4	"ABCC2,CPN1,DNMBP,ERLIN1"
TCGA.AA.A010.01A	10	101636861	102009971	66	0.1102	NEUTRAL	NA	5	"CHUK,CPN1,CWF19L1,DNMBP,ERLIN1"
TCGA.A6.3810.01A	10	101636861	123718797	1651	0.0154	NEUTRAL	NA	146	Too-Many
TCGA.AA.A00L.01A	10	101654653	103433208	250	0.0858	NEUTRAL	NA	27	"BLOC1S2,BTRC,C10orf2,CHUK,CPN1,CWF19L1,DNMBP,DPCD,ERLIN1,FAM178A,FBXW4,HIF1AN,KAZALD1,LBX1,LZTS2,MRPL43,NDUFB8,PAX2,PDZD7,PKD2L1,POLL,SCD,SEC31B,SEMA4G,SFXN3,TLX1,WNT8B"
TCGA.AG.3909.01A	10	101667700	101923718	19	0.0633	NEUTRAL	NA	3	"CPN1,DNMBP,ERLIN1"
TCGA.AG.4009.01A	10	101667700	102021682	58	-0.1751	NEUTRAL	NA	5	"CHUK,CPN1,CWF19L1,DNMBP,ERLIN1"
TCGA.AA.A00F.01A	10	101668671	101914560	16	-0.3647	NEUTRAL	NA	3	"CPN1,DNMBP,ERLIN1"
TCGA.AG.A00C.01A	10	101714929	101923718	17	-0.0926	NEUTRAL	NA	3	"CPN1,DNMBP,ERLIN1"
TCGA.AA.3967.01A	10	101835647	101985630	32	-0.4422	NEUTRAL	NA	3	"CHUK,CPN1,ERLIN1"
TCGA.AA.A00F.01A	10	101915850	102306850	111	-0.0377	NEUTRAL	NA	10	"BLOC1S2,CHUK,CWF19L1,ERLIN1,HIF1AN,NDUFB8,PKD2L1,SCD,SEC31B,WNT8B"
TCGA.AA.3850	10	101917365	101934935	8	-0.40745	NEUTRAL	NA	1	ERLIN1
TCGA.AG.A01W.01A	10	101925646	101944123	10	0.3039	NEUTRAL	NA	1	ERLIN1
TCGA.AG.A00C.01A	10	101927033	102823986	185	0.3314	NEUTRAL	NA	19	"BLOC1S2,C10orf2,CHUK,CWF19L1,ERLIN1,FAM178A,HIF1AN,KAZALD1,LZTS2,MRPL43,NDUFB8,PAX2,PDZD7,PKD2L1,SCD,SEC31B,SEMA4G,SFXN3,WNT8B"
TCGA.AA.3850	10	101937193	102205291	77	0.36545	NEUTRAL	NA	6	"BLOC1S2,CHUK,CWF19L1,ERLIN1,PKD2L1,SCD"
TCGA.AG.3906.01A	10	101943456	101953017	5	-0.4705	NEUTRAL	NA	2	"CHUK,ERLIN1"
TCGA.AG.A01W.01A	10	101949646	101986558	17	-0.4679	NEUTRAL	NA	1	CHUK
TCGA.AG.3906.01A	10	101953709	101996560	20	-0.0873	NEUTRAL	NA	2	"CHUK,CWF19L1"
TCGA.AA.3982	10	101967211	102205291	71	0.2916	NEUTRAL	NA	5	"BLOC1S2,CHUK,CWF19L1,PKD2L1,SCD"
TCGA.AA.3967.01A	10	101989145	135440021	2160	-0.1255	NEUTRAL	NA	219	Too-Many
TCGA.AG.3906.01A	10	101997731	102019948	8	0.2635	NEUTRAL	NA	1	CWF19L1
TCGA.AG.A01W.01A	10	102025174	102030631	3	-0.2669	NEUTRAL	NA	1	CWF19L1
TCGA.AG.4009.01A	10	102045807	102054253	10	-0.2051	NEUTRAL	NA	2	"BLOC1S2,PKD2L1"
TCGA.AF.3914.01A	10	102045807	102568815	77	-0.1395	NEUTRAL	NA	8	"BLOC1S2,HIF1AN,NDUFB8,PAX2,PKD2L1,SCD,SEC31B,WNT8B"
TCGA.AG.A01N.01A	10	102045807	135440021	2049	-0.2905	NEUTRAL	NA	217	Too-Many
TCGA.CK.5914.01A	10	102048681	102710374	95	-0.1794	NEUTRAL	NA	8	"FAM178A,HIF1AN,NDUFB8,PAX2,PKD2L1,SCD,SEC31B,WNT8B"
TCGA.AG.3909.01A	10	102052997	102107174	11	0.1801	NEUTRAL	NA	2	"PKD2L1,SCD"
TCGA.AG.3906.01A	10	102054253	102740293	101	0.0944	NEUTRAL	NA	10	"FAM178A,HIF1AN,MRPL43,NDUFB8,PAX2,PKD2L1,SCD,SEC31B,SEMA4G,WNT8B"
TCGA.AG.4009.01A	10	102054682	102250466	27	0.1684	NEUTRAL	NA	4	"PKD2L1,SCD,SEC31B,WNT8B"
TCGA.AA.A02H.01A	10	102054682	104119899	256	-0.227	NEUTRAL	NA	33	"BTRC,C10orf2,C10orf76,DPCD,ELOVL3,FAM178A,FBXW4,FGF8,GBF1,HIF1AN,HPS6,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NOLC1,NPM3,PAX2,PDZD7,PITX3,PKD2L1,POLL,PPRC1,SCD,SEC31B,SEMA4G,SFXN3,TLX1,WNT8B"
TCGA.AA.3815.01A	10	102055830	126507917	1766	0.0253	NEUTRAL	NA	166	Too-Many
TCGA.AG.A01L.01A	10	102058287	102222870	11	-0.1685	NEUTRAL	NA	3	"PKD2L1,SCD,WNT8B"
TCGA.AG.A01W.01A	10	102079590	103350476	150	-0.4951	NEUTRAL	NA	20	"BTRC,C10orf2,DPCD,FAM178A,HIF1AN,KAZALD1,LBX1,LZTS2,MRPL43,NDUFB8,PAX2,PDZD7,PKD2L1,POLL,SCD,SEC31B,SEMA4G,SFXN3,TLX1,WNT8B"
TCGA.AA.A010.01A	10	102088946	102732618	86	0.1833	NEUTRAL	NA	9	"FAM178A,HIF1AN,NDUFB8,PAX2,PKD2L1,SCD,SEC31B,SEMA4G,WNT8B"
TCGA.A6.6653	10	102094593	118455602	5444	-0.0396	NEUTRAL	NA	111	Too-Many
TCGA.AG.3611.01A	10	102107773	102222870	6	0.1914	NEUTRAL	NA	2	"SCD,WNT8B"
TCGA.AA.3850	10	102222660	102229350	8	-0.48085	NEUTRAL	NA	1	WNT8B
TCGA.AA.3977	10	102227408	102229350	5	-0.5074	NEUTRAL	NA	1	WNT8B
TCGA.AG.3611.01A	10	102238788	104118999	233	-0.2107	NEUTRAL	NA	31	"BTRC,C10orf2,C10orf76,DPCD,ELOVL3,FAM178A,FBXW4,FGF8,GBF1,HIF1AN,HPS6,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NOLC1,NPM3,PAX2,PDZD7,PITX3,POLL,PPRC1,SEC31B,SEMA4G,SFXN3,TLX1,WNT8B"
TCGA.AA.3982	10	102248883	105647094	647	0.3211	NEUTRAL	NA	59	"ACTR1A,ARL3,AS3MT,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CNNM2,CUEDC2,CYP17A1,DPCD,ELOVL3,FAM178A,FBXL15,FBXW4,FGF8,GBF1,HIF1AN,HPS6,INA,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NEURL1,NFKB2,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDZD7,PITX3,POLL,PPRC1,PSD,RPEL1,SEC31B,SEMA4G,SFXN2,SFXN3,SH3PXD2A,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L"
TCGA.AA.3977	10	102248883	113506078	3610	0.0077	NEUTRAL	NA	80	"ACTR1A,ADD3,ADRA2A,ARL3,AS3MT,BBIP1,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CNNM2,COL17A1,CUEDC2,CYP17A1,DPCD,DUSP5,ELOVL3,FAM178A,FBXL15,FBXW4,FGF8,GBF1,GSTO1,GSTO2,HIF1AN,HPS6,INA,ITPRIP,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,MXI1,NDUFB8,NEURL1,NFKB2,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDCD4,PDZD7,PITX3,POLL,PPRC1,PSD,RBM20,RPEL1,SEC31B,SEMA4G,SFR1,SFXN2,SFXN3,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L,XPNPEP1"
TCGA.AG.4009.01A	10	102255105	102289475	23	-0.3791	NEUTRAL	NA	2	"NDUFB8,SEC31B"
TCGA.AG.A01L.01A	10	102255105	104135982	253	-0.1598	NEUTRAL	NA	30	"BTRC,C10orf2,C10orf76,DPCD,ELOVL3,FAM178A,FBXW4,FGF8,GBF1,HIF1AN,HPS6,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NOLC1,NPM3,PAX2,PDZD7,PITX3,POLL,PPRC1,SEC31B,SEMA4G,SFXN3,TLX1"
TCGA.A6.3808.01A	10	102261980	105819312	562	-0.5067	NEUTRAL	NA	61	"ACTR1A,ARL3,AS3MT,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CNNM2,COL17A1,CUEDC2,CYP17A1,DPCD,ELOVL3,FAM178A,FBXL15,FBXW4,FGF8,GBF1,HIF1AN,HPS6,INA,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NEURL1,NFKB2,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDZD7,PITX3,POLL,PPRC1,PSD,RPEL1,SEC31B,SEMA4G,SFXN2,SFXN3,SH3PXD2A,SLK,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L"
TCGA.AG.4009.01A	10	102295684	102568815	16	0.005	NEUTRAL	NA	2	"HIF1AN,PAX2"
TCGA.AA.A00F.01A	10	102307771	102584365	9	-0.3828	NEUTRAL	NA	2	"HIF1AN,PAX2"
TCGA.AH.6897	10	102407172	115390352	4260	-0.4538	NEUTRAL	NA	85	"ACSL5,ACTR1A,ADD3,ADRA2A,ARL3,AS3MT,BBIP1,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CNNM2,COL17A1,CUEDC2,CYP17A1,DPCD,DUSP5,ELOVL3,FAM178A,FBXL15,FBXW4,FGF8,GBF1,GPAM,GSTO1,GSTO2,HABP2,HPS6,INA,ITPRIP,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,MXI1,NEURL1,NFKB2,NOLC1,NPM3,NRAP,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDCD4,PDZD7,PITX3,POLL,PPRC1,PSD,RBM20,RPEL1,SEMA4G,SFR1,SFXN2,SFXN3,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,SUFU,TAF5,TCF7L2,TECTB,TLX1,TMEM180,TRIM8,USMG5,VTI1A,WBP1L,XPNPEP1,ZDHHC6"
TCGA.AA.3972	10	102536663	135434550	12311	-0.2794	NEUTRAL	NA	209	Too-Many
TCGA.AA.A00F.01A	10	102584624	104465073	256	-0.0991	NEUTRAL	NA	37	"ACTR1A,ARL3,BTRC,C10orf2,C10orf76,C10orf95,CUEDC2,DPCD,ELOVL3,FAM178A,FBXL15,FBXW4,FGF8,GBF1,HPS6,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NFKB2,NOLC1,NPM3,PAX2,PDZD7,PITX3,POLL,PPRC1,PSD,SEMA4G,SFXN3,SUFU,TLX1,TMEM180,TRIM8"
TCGA.AG.4009.01A	10	102672821	102743030	32	0.026	NEUTRAL	NA	3	"FAM178A,MRPL43,SEMA4G"
TCGA.AF.3914.01A	10	102672821	104141801	227	-0.0381	NEUTRAL	NA	26	"BTRC,C10orf2,C10orf76,DPCD,ELOVL3,FAM178A,FBXW4,FGF8,GBF1,HPS6,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NOLC1,NPM3,PDZD7,PITX3,POLL,PPRC1,SEMA4G,SFXN3,TLX1"
TCGA.AG.4009.01A	10	102746218	102778581	14	-0.4085	NEUTRAL	NA	4	"C10orf2,LZTS2,MRPL43,PDZD7"
TCGA.AG.4009.01A	10	102780319	102822303	17	0.3716	NEUTRAL	NA	3	"KAZALD1,PDZD7,SFXN3"
TCGA.AG.3906.01A	10	102789723	103436062	50	-0.0687	NEUTRAL	NA	9	"BTRC,DPCD,FBXW4,KAZALD1,LBX1,PDZD7,POLL,SFXN3,TLX1"
TCGA.AA.A00Q.01A	10	102789723	105727456	349	-0.1259	NEUTRAL	NA	51	"ACTR1A,ARL3,AS3MT,BTRC,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CNNM2,CUEDC2,CYP17A1,DPCD,ELOVL3,FBXL15,FBXW4,FGF8,GBF1,HPS6,INA,KAZALD1,KCNIP2,LBX1,LDB1,MGEA5,NEURL1,NFKB2,NOLC1,NPM3,NT5C2,OBFC1,PCGF6,PDCD11,PDZD7,PITX3,POLL,PPRC1,PSD,RPEL1,SFXN2,SFXN3,SH3PXD2A,SLK,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L"
TCGA.AG.3909.01A	10	102822303	103559952	58	-0.4419	NEUTRAL	NA	10	"BTRC,DPCD,FBXW4,FGF8,KAZALD1,LBX1,MGEA5,NPM3,POLL,TLX1"
TCGA.AG.4009.01A	10	102823986	103769681	85	-0.112	NEUTRAL	NA	12	"BTRC,C10orf76,DPCD,FBXW4,FGF8,KAZALD1,KCNIP2,LBX1,MGEA5,NPM3,POLL,TLX1"
TCGA.AG.A00C.01A	10	102849306	103285733	8	-0.3634	NEUTRAL	NA	3	"BTRC,LBX1,TLX1"
TCGA.AA.A00N.01A	10	102849306	103530034	44	0.1814	NEUTRAL	NA	7	"BTRC,DPCD,FBXW4,FGF8,LBX1,POLL,TLX1"
TCGA.AA.A01Q.01A	10	103113865	104161480	144	-0.0205	NEUTRAL	NA	17	"BTRC,C10orf76,DPCD,ELOVL3,FBXW4,FGF8,GBF1,HPS6,KCNIP2,LDB1,MGEA5,NFKB2,NOLC1,NPM3,PITX3,POLL,PPRC1"
TCGA.CK.5914.01A	10	103239073	103369074	26	-0.4059	NEUTRAL	NA	3	"BTRC,DPCD,POLL"
TCGA.AG.A00C.01A	10	103290946	103360443	19	-0.0557	NEUTRAL	NA	3	"BTRC,DPCD,POLL"
TCGA.AG.A01W.01A	10	103350912	103524429	14	0.0198	NEUTRAL	NA	2	"DPCD,FBXW4"
TCGA.AG.A00C.01A	10	103360950	103384437	7	-0.3921	NEUTRAL	NA	2	"DPCD,FBXW4"
TCGA.CK.5914.01A	10	103371001	103530034	9	0.3063	NEUTRAL	NA	2	"FBXW4,FGF8"
TCGA.AA.3989	10	103387539	106027058	523	0.1815	NEUTRAL	NA	47	"ACTR1A,ARL3,AS3MT,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CNNM2,COL17A1,CUEDC2,CYP17A1,ELOVL3,FBXL15,FBXW4,FGF8,GBF1,GSTO1,HPS6,INA,KCNIP2,LDB1,MGEA5,NEURL1,NFKB2,NOLC1,NPM3,NT5C2,OBFC1,PCGF6,PDCD11,PITX3,PPRC1,PSD,RPEL1,SFR1,SFXN2,SH3PXD2A,SLK,SUFU,TAF5,TMEM180,TRIM8,USMG5,WBP1L"
TCGA.AG.A00C.01A	10	103427601	103546171	12	0.2129	NEUTRAL	NA	4	"FBXW4,FGF8,MGEA5,NPM3"
TCGA.CK.5914.01A	10	103531170	103542980	7	-0.3022	NEUTRAL	NA	2	"FGF8,NPM3"
TCGA.AA.A00L.01A	10	103541970	104161480	99	0.174	NEUTRAL	NA	12	"C10orf76,ELOVL3,GBF1,HPS6,KCNIP2,LDB1,MGEA5,NFKB2,NOLC1,NPM3,PITX3,PPRC1"
TCGA.AG.3906.01A	10	103557660	103771459	33	0.1131	NEUTRAL	NA	3	"C10orf76,KCNIP2,MGEA5"
TCGA.AA.A010.01A	10	103565755	103825185	41	0.0817	NEUTRAL	NA	4	"C10orf76,HPS6,KCNIP2,MGEA5"
TCGA.EF.5830	10	103574361	129336122	9581	0.001	NEUTRAL	NA	156	Too-Many
TCGA.AG.A01W.01A	10	103577047	103892723	44	-0.427	NEUTRAL	NA	5	"C10orf76,HPS6,KCNIP2,LDB1,MGEA5"
TCGA.AA.A00N.01A	10	103588785	103609506	8	-0.4221	NEUTRAL	NA	2	"C10orf76,KCNIP2"
TCGA.CK.5914.01A	10	103588785	103772515	23	0.0102	NEUTRAL	NA	2	"C10orf76,KCNIP2"
TCGA.AG.3909.01A	10	103590777	103607234	3	-0.3682	NEUTRAL	NA	2	"C10orf76,KCNIP2"
TCGA.AG.A00C.01A	10	103590777	103773667	20	-0.0154	NEUTRAL	NA	2	"C10orf76,KCNIP2"
TCGA.AG.3909.01A	10	103609506	103766245	12	0.1502	NEUTRAL	NA	1	C10orf76
TCGA.AA.3488	10	103690569	135434550	12085	-0.4602	NEUTRAL	NA	190	Too-Many
TCGA.AG.3909.01A	10	103769077	103784869	7	-0.3253	NEUTRAL	NA	1	C10orf76
TCGA.CK.5914.01A	10	103825185	103921881	28	-0.294	NEUTRAL	NA	4	"HPS6,LDB1,NOLC1,PPRC1"
TCGA.AG.3909.01A	10	103867873	103921881	25	0.0145	NEUTRAL	NA	3	"LDB1,NOLC1,PPRC1"
TCGA.AG.4009.01A	10	103897567	103921881	19	0.0913	NEUTRAL	NA	2	"NOLC1,PPRC1"
TCGA.AG.3906.01A	10	103897567	104141801	60	0.1926	NEUTRAL	NA	5	"ELOVL3,GBF1,NOLC1,PITX3,PPRC1"
TCGA.AG.3891.01A	10	103897567	104155627	61	0.2279	NEUTRAL	NA	6	"ELOVL3,GBF1,NFKB2,NOLC1,PITX3,PPRC1"
TCGA.AA.A00N.01A	10	103904721	103921881	14	-0.067	NEUTRAL	NA	2	"NOLC1,PPRC1"
TCGA.AA.A010.01A	10	103904721	103988552	18	-0.2839	NEUTRAL	NA	3	"ELOVL3,NOLC1,PPRC1"
TCGA.AG.A01W.01A	10	103906716	103981669	16	-0.2642	NEUTRAL	NA	2	"NOLC1,PPRC1"
TCGA.CK.5914.01A	10	103990224	104019754	5	-0.3211	NEUTRAL	NA	2	"GBF1,PITX3"
TCGA.AA.A010.01A	10	103990224	104123035	18	0.2298	NEUTRAL	NA	2	"GBF1,PITX3"
TCGA.AG.4009.01A	10	103990224	104155627	38	0.0854	NEUTRAL	NA	3	"GBF1,NFKB2,PITX3"
TCGA.AG.3909.01A	10	103991673	104155627	36	0.1892	NEUTRAL	NA	3	"GBF1,NFKB2,PITX3"
TCGA.CA.5254	10	104036354	104638479	112	-0.1898	NEUTRAL	NA	16	"ACTR1A,ARL3,AS3MT,C10orf32,C10orf95,CUEDC2,CYP17A1,FBXL15,GBF1,NFKB2,PSD,SFXN2,SUFU,TMEM180,TRIM8,WBP1L"
TCGA.CM.4747	10	104036448	135434550	12053	-0.4336	NEUTRAL	NA	183	Too-Many
TCGA.AG.A00C.01A	10	104103778	105785315	265	0.0927	NEUTRAL	NA	31	"ACTR1A,ARL3,AS3MT,C10orf32,C10orf95,CALHM1,CALHM2,CALHM3,CNNM2,CUEDC2,CYP17A1,FBXL15,GBF1,INA,NEURL1,NFKB2,NT5C2,OBFC1,PCGF6,PDCD11,PSD,RPEL1,SFXN2,SH3PXD2A,SLK,SUFU,TAF5,TMEM180,TRIM8,USMG5,WBP1L"
TCGA.AG.3611.01A	10	104119899	104161144	25	0.1276	NEUTRAL	NA	2	"GBF1,NFKB2"
TCGA.AA.A02H.01A	10	104122205	104136675	16	-0.0828	NEUTRAL	NA	1	GBF1
TCGA.AG.A01W.01A	10	104125973	104173984	33	-0.084	NEUTRAL	NA	3	"GBF1,NFKB2,PSD"
TCGA.AA.3831	10	104132534	104451415	54	0.3023	NEUTRAL	NA	11	"ACTR1A,ARL3,C10orf95,CUEDC2,FBXL15,GBF1,NFKB2,PSD,SUFU,TMEM180,TRIM8"
TCGA.AG.3727	10	104132534	104637991	101	0.3007	NEUTRAL	NA	16	"ACTR1A,ARL3,AS3MT,C10orf32,C10orf95,CUEDC2,CYP17A1,FBXL15,GBF1,NFKB2,PSD,SFXN2,SUFU,TMEM180,TRIM8,WBP1L"
TCGA.AG.A01L.01A	10	104136675	104164628	21	0.1791	NEUTRAL	NA	3	"GBF1,NFKB2,PSD"
TCGA.CK.5914.01A	10	104136675	104473930	79	-0.3443	NEUTRAL	NA	11	"ACTR1A,ARL3,C10orf95,CUEDC2,FBXL15,GBF1,NFKB2,PSD,SUFU,TMEM180,TRIM8"
TCGA.AG.A015.01A	10	104139958	104196225	26	0.3175	NEUTRAL	NA	5	"CUEDC2,FBXL15,GBF1,NFKB2,PSD"
TCGA.AA.A02H.01A	10	104139958	105821098	261	-0.196	NEUTRAL	NA	32	"ACTR1A,ARL3,AS3MT,C10orf32,C10orf95,CALHM1,CALHM2,CALHM3,CNNM2,COL17A1,CUEDC2,CYP17A1,FBXL15,GBF1,INA,NEURL1,NFKB2,NT5C2,OBFC1,PCGF6,PDCD11,PSD,RPEL1,SFXN2,SH3PXD2A,SLK,SUFU,TAF5,TMEM180,TRIM8,USMG5,WBP1L"
TCGA.AG.3909.01A	10	104155972	104268874	45	-0.4988	NEUTRAL	NA	8	"ACTR1A,C10orf95,CUEDC2,FBXL15,NFKB2,PSD,SUFU,TMEM180"
TCGA.AG.3611.01A	10	104161480	112580991	456	-0.1491	NEUTRAL	NA	46	"ACTR1A,ADD3,ARL3,AS3MT,C10orf32,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CNNM2,COL17A1,CUEDC2,CYP17A1,DUSP5,FBXL15,GSTO1,GSTO2,INA,ITPRIP,MXI1,NEURL1,NFKB2,NT5C2,OBFC1,PCGF6,PDCD11,PSD,RBM20,RPEL1,SFR1,SFXN2,SH3PXD2A,SLK,SMC3,SMNDC1,SORCS1,SORCS3,SUFU,TAF5,TMEM180,TRIM8,USMG5,WBP1L,XPNPEP1"
TCGA.AA.A00L.01A	10	104162915	104182571	15	-0.3007	NEUTRAL	NA	2	"FBXL15,PSD"
TCGA.AG.A01L.01A	10	104170560	104572325	62	-0.1537	NEUTRAL	NA	11	"ACTR1A,ARL3,C10orf95,CUEDC2,FBXL15,PSD,SFXN2,SUFU,TMEM180,TRIM8,WBP1L"
TCGA.AA.A02K.01A	10	104171853	105073889	125	-0.1608	NEUTRAL	NA	19	"ACTR1A,ARL3,AS3MT,C10orf32,C10orf95,CNNM2,CUEDC2,CYP17A1,FBXL15,INA,NT5C2,PCGF6,PSD,RPEL1,SFXN2,SUFU,TMEM180,TRIM8,WBP1L"
TCGA.AF.3914.01A	10	104173496	120907228	981	-0.0149	NEUTRAL	NA	93	"ABLIM1,ACSL5,ACTR1A,ADD3,ADRA2A,ADRB1,AFAP1L2,ARL3,AS3MT,ATRNL1,BBIP1,C10orf32,C10orf82,C10orf95,CACUL1,CALHM1,CALHM2,CALHM3,CASP7,CCDC172,CCDC186,CFAP43,CFAP58,CNNM2,COL17A1,CUEDC2,CYP17A1,DCLRE1A,DUSP5,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM45A,FBXL15,GFRA1,GPAM,GSTO1,GSTO2,HABP2,HSPA12A,INA,ITPRIP,KCNK18,KIAA1598,MXI1,NANOS1,NEURL1,NHLRC2,NRAP,NT5C2,OBFC1,PCGF6,PDCD11,PDCD4,PDZD8,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRLHR,PSD,RAB11FIP2,RBM20,RPEL1,SFR1,SFXN2,SFXN4,SH3PXD2A,SHOC2,SLC18A2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,SUFU,TAF5,TCF7L2,TDRD1,TECTB,TMEM180,TRIM8,TRUB1,USMG5,VAX1,VTI1A,VWA2,WBP1L,XPNPEP1,ZDHHC6"
TCGA.AG.3906.01A	10	104174669	118738704	889	-8.00E-04	NEUTRAL	NA	80	"ABLIM1,ACSL5,ACTR1A,ADD3,ADRA2A,ADRB1,AFAP1L2,ARL3,AS3MT,ATRNL1,BBIP1,C10orf32,C10orf82,C10orf95,CALHM1,CALHM2,CALHM3,CASP7,CCDC172,CCDC186,CFAP43,CFAP58,CNNM2,COL17A1,CUEDC2,CYP17A1,DCLRE1A,DUSP5,ENO4,FAM160B1,FBXL15,GFRA1,GPAM,GSTO1,GSTO2,HABP2,HSPA12A,INA,ITPRIP,KIAA1598,MXI1,NEURL1,NHLRC2,NRAP,NT5C2,OBFC1,PCGF6,PDCD11,PDCD4,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PSD,RBM20,RPEL1,SFR1,SFXN2,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,SUFU,TAF5,TCF7L2,TDRD1,TECTB,TMEM180,TRIM8,TRUB1,USMG5,VTI1A,VWA2,WBP1L,XPNPEP1,ZDHHC6"
TCGA.AA.A01Q.01A	10	104175747	104235450	15	-0.1717	NEUTRAL	NA	5	"C10orf95,CUEDC2,FBXL15,PSD,TMEM180"
TCGA.AG.4009.01A	10	104175747	104268874	25	-0.1154	NEUTRAL	NA	7	"ACTR1A,C10orf95,CUEDC2,FBXL15,PSD,SUFU,TMEM180"
TCGA.AG.3891.01A	10	104182571	105046751	110	0.2298	NEUTRAL	NA	17	"ACTR1A,ARL3,AS3MT,C10orf32,C10orf95,CNNM2,CUEDC2,CYP17A1,FBXL15,INA,NT5C2,RPEL1,SFXN2,SUFU,TMEM180,TRIM8,WBP1L"
TCGA.AA.A00L.01A	10	104183151	135373539	1660	0.0494	NEUTRAL	NA	179	Too-Many
TCGA.AA.A010.01A	10	104210245	104262284	17	-0.0156	NEUTRAL	NA	3	"ACTR1A,C10orf95,TMEM180"
TCGA.AG.A015.01A	10	104228740	104489426	43	-0.123	NEUTRAL	NA	6	"ACTR1A,ARL3,SFXN2,SUFU,TMEM180,TRIM8"
TCGA.AG.4009.01A	10	104309680	104660298	57	0.2373	NEUTRAL	NA	8	"ARL3,AS3MT,C10orf32,CYP17A1,SFXN2,SUFU,TRIM8,WBP1L"
TCGA.AA.A01Q.01A	10	104309680	105194538	112	0.0743	NEUTRAL	NA	16	"ARL3,AS3MT,C10orf32,CNNM2,CYP17A1,INA,NT5C2,PCGF6,PDCD11,RPEL1,SFXN2,SUFU,TAF5,TRIM8,USMG5,WBP1L"
TCGA.AG.3909.01A	10	104378729	104473930	14	-0.4394	NEUTRAL	NA	3	"ARL3,SUFU,TRIM8"
TCGA.AA.A00N.01A	10	104386900	104465073	12	-0.4294	NEUTRAL	NA	3	"ARL3,SUFU,TRIM8"
TCGA.AA.A010.01A	10	104436623	104449609	3	-0.1495	NEUTRAL	NA	1	ARL3
TCGA.AA.3831	10	104456724	135434550	11983	-0.0099	NEUTRAL	NA	173	Too-Many
TCGA.AA.A00F.01A	10	104473930	104613992	24	-0.458	NEUTRAL	NA	5	"ARL3,C10orf32,CYP17A1,SFXN2,WBP1L"
TCGA.AG.3909.01A	10	104486393	104613992	24	0.2924	NEUTRAL	NA	4	"C10orf32,CYP17A1,SFXN2,WBP1L"
TCGA.CK.5914.01A	10	104486393	104613992	24	0.2897	NEUTRAL	NA	4	"C10orf32,CYP17A1,SFXN2,WBP1L"
TCGA.AA.A024.01A	10	104594491	114724253	488	-0.0069	NEUTRAL	NA	44	"ACSL5,ADD3,ADRA2A,AS3MT,BBIP1,C10orf32,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CNNM2,COL17A1,CYP17A1,DUSP5,GPAM,GSTO1,GSTO2,INA,ITPRIP,MXI1,NEURL1,NT5C2,OBFC1,PCGF6,PDCD11,PDCD4,RBM20,RPEL1,SFR1,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,TAF5,TCF7L2,TECTB,USMG5,VTI1A,XPNPEP1,ZDHHC6"
TCGA.AG.A01W.01A	10	104604003	105027619	41	-0.2594	NEUTRAL	NA	5	"AS3MT,C10orf32,CNNM2,NT5C2,RPEL1"
TCGA.AG.A01L.01A	10	104613992	105206859	97	-0.1414	NEUTRAL	NA	11	"AS3MT,C10orf32,CALHM2,CNNM2,INA,NT5C2,PCGF6,PDCD11,RPEL1,TAF5,USMG5"
TCGA.AA.3930.01A	10	104613992	116659161	738	0.0992	NEUTRAL	NA	56	"ABLIM1,ACSL5,ADD3,ADRA2A,ADRB1,AFAP1L2,AS3MT,BBIP1,C10orf32,CALHM1,CALHM2,CALHM3,CASP7,CCDC186,CFAP43,CFAP58,CNNM2,COL17A1,DCLRE1A,DUSP5,FAM160B1,GPAM,GSTO1,GSTO2,HABP2,INA,ITPRIP,MXI1,NEURL1,NHLRC2,NRAP,NT5C2,OBFC1,PCGF6,PDCD11,PDCD4,PLEKHS1,RBM20,RPEL1,SFR1,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,TAF5,TCF7L2,TDRD1,TECTB,USMG5,VTI1A,VWA2,XPNPEP1,ZDHHC6"
TCGA.AA.A00F.01A	10	104620034	105086262	28	-0.0535	NEUTRAL	NA	7	"AS3MT,C10orf32,CNNM2,INA,NT5C2,PCGF6,RPEL1"
TCGA.AG.A015.01A	10	104620034	135440021	1647	-0.1455	NEUTRAL	NA	170	Too-Many
TCGA.AA.A010.01A	10	104636654	105785315	147	-0.0159	NEUTRAL	NA	16	"AS3MT,CALHM1,CALHM2,CALHM3,CNNM2,INA,NEURL1,NT5C2,OBFC1,PCGF6,PDCD11,RPEL1,SH3PXD2A,SLK,TAF5,USMG5"
TCGA.AG.3727	10	104638479	135434550	11954	0.0015	NEUTRAL	NA	168	Too-Many
TCGA.CA.5254	10	104638722	104869530	48	0.3322	NEUTRAL	NA	3	"AS3MT,CNNM2,NT5C2"
TCGA.AG.4009.01A	10	104678236	105048080	31	-0.4329	NEUTRAL	NA	4	"CNNM2,INA,NT5C2,RPEL1"
TCGA.CK.5914.01A	10	104849378	104866309	16	0.0434	NEUTRAL	NA	1	NT5C2
TCGA.AA.A01K.01A	10	104849378	105840319	166	0.094	NEUTRAL	NA	15	"CALHM1,CALHM2,CALHM3,COL17A1,INA,NEURL1,NT5C2,OBFC1,PCGF6,PDCD11,RPEL1,SH3PXD2A,SLK,TAF5,USMG5"
TCGA.AG.3909.01A	10	104853676	105158135	37	-0.4728	NEUTRAL	NA	7	"INA,NT5C2,PCGF6,PDCD11,RPEL1,TAF5,USMG5"
TCGA.CA.5254	10	104897900	108358497	1191	-0.1507	NEUTRAL	NA	23	"CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,COL17A1,GSTO1,GSTO2,INA,ITPRIP,NEURL1,NT5C2,OBFC1,PCGF6,PDCD11,RPEL1,SFR1,SH3PXD2A,SLK,SORCS1,SORCS3,TAF5,USMG5"
TCGA.CK.5914.01A	10	104899101	105093595	11	-0.3556	NEUTRAL	NA	4	"INA,NT5C2,PCGF6,RPEL1"
TCGA.DM.A28A	10	104906210	135434550	11880	-0.0188	NEUTRAL	NA	166	Too-Many
TCGA.AG.4009.01A	10	105063593	105108435	7	0.1041	NEUTRAL	NA	1	PCGF6
TCGA.AA.A02K.01A	10	105086240	105110427	6	0.347	NEUTRAL	NA	1	PCGF6
TCGA.AA.A00F.01A	10	105093595	105139328	7	0.2916	NEUTRAL	NA	2	"PCGF6,TAF5"
TCGA.AG.3891.01A	10	105110414	105206859	46	0.2614	NEUTRAL	NA	5	"CALHM2,PCGF6,PDCD11,TAF5,USMG5"
TCGA.CK.5914.01A	10	105110414	105382167	65	-0.4317	NEUTRAL	NA	9	"CALHM1,CALHM2,CALHM3,NEURL1,PCGF6,PDCD11,SH3PXD2A,TAF5,USMG5"
TCGA.AG.4009.01A	10	105133098	105146881	7	-0.2211	NEUTRAL	NA	1	TAF5
TCGA.AA.A02K.01A	10	105133099	124340296	1155	-0.1942	NEUTRAL	NA	93	"ABLIM1,ACSL5,ADD3,ADRA2A,ADRB1,AFAP1L2,ARMS2,ATE1,ATRNL1,BAG3,BBIP1,BTBD16,C10orf82,CACUL1,CALHM1,CALHM2,CALHM3,CASP7,CCDC172,CCDC186,CFAP43,CFAP58,COL17A1,DCLRE1A,DMBT1,DUSP5,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM45A,FGFR2,GFRA1,GPAM,GRK5,GSTO1,GSTO2,HABP2,HSPA12A,HTRA1,INPP5F,ITPRIP,KCNK18,KIAA1598,MCMBP,MXI1,NANOS1,NEURL1,NHLRC2,NRAP,NSMCE4A,OBFC1,PDCD11,PDCD4,PDZD8,PLEKHA1,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,RAB11FIP2,RBM20,RGS10,SEC23IP,SFR1,SFXN4,SH3PXD2A,SHOC2,SLC18A2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,TACC2,TAF5,TCF7L2,TDRD1,TECTB,TIAL1,TRUB1,USMG5,VAX1,VTI1A,VWA2,WDR11,XPNPEP1,ZDHHC6"
TCGA.AA.A00F.01A	10	105141431	113931913	375	-0.2443	NEUTRAL	NA	31	"ADD3,ADRA2A,BBIP1,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,COL17A1,DUSP5,GPAM,GSTO1,GSTO2,ITPRIP,MXI1,NEURL1,OBFC1,PDCD11,PDCD4,RBM20,SFR1,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,TAF5,USMG5,XPNPEP1"
TCGA.AG.4009.01A	10	105147716	105217964	41	0.1739	NEUTRAL	NA	5	"CALHM1,CALHM2,PDCD11,TAF5,USMG5"
TCGA.AA.A00N.01A	10	105153964	105184709	20	0.2942	NEUTRAL	NA	2	"PDCD11,USMG5"
TCGA.AG.3909.01A	10	105160143	105184709	18	0.0135	NEUTRAL	NA	1	PDCD11
TCGA.AG.3909.01A	10	105187020	105204232	14	-0.4033	NEUTRAL	NA	1	PDCD11
TCGA.AA.A00N.01A	10	105187020	105361524	30	-0.2917	NEUTRAL	NA	6	"CALHM1,CALHM2,CALHM3,NEURL1,PDCD11,SH3PXD2A"
TCGA.AG.A01W.01A	10	105195084	114701216	406	-0.2601	NEUTRAL	NA	33	"ACSL5,ADD3,ADRA2A,BBIP1,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,COL17A1,DUSP5,GPAM,GSTO1,GSTO2,ITPRIP,MXI1,NEURL1,OBFC1,PDCD11,PDCD4,RBM20,SFR1,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,TECTB,VTI1A,XPNPEP1,ZDHHC6"
TCGA.AG.A032.01A	10	105202875	135440021	1511	-0.0733	NEUTRAL	NA	161	Too-Many
TCGA.AG.A01L.01A	10	105209115	105495462	16	0.2436	NEUTRAL	NA	5	"CALHM1,CALHM2,CALHM3,NEURL1,SH3PXD2A"
TCGA.AG.3891.01A	10	105209115	116881422	609	-0.0928	NEUTRAL	NA	48	"ABLIM1,ACSL5,ADD3,ADRA2A,ADRB1,AFAP1L2,ATRNL1,BBIP1,CALHM1,CALHM2,CALHM3,CASP7,CCDC186,CFAP43,CFAP58,COL17A1,DCLRE1A,DUSP5,FAM160B1,GPAM,GSTO1,GSTO2,HABP2,ITPRIP,MXI1,NEURL1,NHLRC2,NRAP,OBFC1,PDCD4,PLEKHS1,RBM20,SFR1,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,TCF7L2,TDRD1,TECTB,TRUB1,VTI1A,VWA2,XPNPEP1,ZDHHC6"
TCGA.D5.6532	10	105272024	135434550	11841	-0.0124	NEUTRAL	NA	156	Too-Many
TCGA.AG.3909.01A	10	105372558	105800040	50	-0.1146	NEUTRAL	NA	4	"COL17A1,OBFC1,SH3PXD2A,SLK"
TCGA.AG.4009.01A	10	105376907	111967520	239	0.0741	NEUTRAL	NA	15	"ADD3,CFAP43,CFAP58,COL17A1,GSTO1,GSTO2,ITPRIP,MXI1,OBFC1,SFR1,SH3PXD2A,SLK,SORCS1,SORCS3,XPNPEP1"
TCGA.AA.A00N.01A	10	105382167	105659778	16	0.0776	NEUTRAL	NA	2	"OBFC1,SH3PXD2A"
TCGA.CK.5914.01A	10	105386798	106014880	130	0.0768	NEUTRAL	NA	7	"CFAP43,COL17A1,GSTO1,OBFC1,SFR1,SH3PXD2A,SLK"
TCGA.G4.6588	10	105428962	114340754	3333	-0.3394	NEUTRAL	NA	28	"ACSL5,ADD3,ADRA2A,BBIP1,CFAP43,CFAP58,COL17A1,DUSP5,GPAM,GSTO1,GSTO2,ITPRIP,MXI1,OBFC1,PDCD4,RBM20,SFR1,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,TECTB,VTI1A,XPNPEP1,ZDHHC6"
TCGA.AA.A01Q.01A	10	105526798	105791934	31	0.1323	NEUTRAL	NA	4	"COL17A1,OBFC1,SH3PXD2A,SLK"
TCGA.AG.A01L.01A	10	105526798	121563658	836	-0.1105	NEUTRAL	NA	73	"ABLIM1,ACSL5,ADD3,ADRA2A,ADRB1,AFAP1L2,ATRNL1,BAG3,BBIP1,C10orf82,CACUL1,CASP7,CCDC172,CCDC186,CFAP43,CFAP58,COL17A1,DCLRE1A,DUSP5,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM45A,GFRA1,GPAM,GRK5,GSTO1,GSTO2,HABP2,HSPA12A,INPP5F,ITPRIP,KCNK18,KIAA1598,MXI1,NANOS1,NHLRC2,NRAP,OBFC1,PDCD4,PDZD8,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRDX3,PRLHR,RAB11FIP2,RBM20,RGS10,SFR1,SFXN4,SH3PXD2A,SHOC2,SLC18A2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,TCF7L2,TDRD1,TECTB,TIAL1,TRUB1,VAX1,VTI1A,VWA2,XPNPEP1,ZDHHC6"
TCGA.AA.3982	10	105649939	106766397	446	0.0113	NEUTRAL	NA	10	"CFAP43,CFAP58,COL17A1,GSTO1,GSTO2,ITPRIP,OBFC1,SFR1,SLK,SORCS3"
TCGA.AA.3850	10	105657362	106709238	428	0.11625	NEUTRAL	NA	10	"CFAP43,CFAP58,COL17A1,GSTO1,GSTO2,ITPRIP,OBFC1,SFR1,SLK,SORCS3"
TCGA.AA.A00Q.01A	10	105750413	105781340	16	0.2088	NEUTRAL	NA	1	SLK
TCGA.AA.A00N.01A	10	105750413	105791934	18	0.106	NEUTRAL	NA	2	"COL17A1,SLK"
TCGA.AA.3861.01A	10	105781340	112328652	231	-0.2619	NEUTRAL	NA	16	"ADD3,CFAP43,CFAP58,COL17A1,DUSP5,GSTO1,GSTO2,ITPRIP,MXI1,SFR1,SLK,SMC3,SMNDC1,SORCS1,SORCS3,XPNPEP1"
TCGA.AA.3862.01A	10	105781340	112338329	237	-0.2682	NEUTRAL	NA	16	"ADD3,CFAP43,CFAP58,COL17A1,DUSP5,GSTO1,GSTO2,ITPRIP,MXI1,SFR1,SLK,SMC3,SMNDC1,SORCS1,SORCS3,XPNPEP1"
TCGA.AA.A00Q.01A	10	105785315	135373539	1453	-0.0548	NEUTRAL	NA	153	Too-Many
TCGA.AG.A00C.01A	10	105791934	105802099	16	-0.3115	NEUTRAL	NA	1	COL17A1
TCGA.AA.A01Q.01A	10	105798756	105803233	7	0.183	NEUTRAL	NA	1	COL17A1
TCGA.AG.A00C.01A	10	105803233	105840319	33	0.0585	NEUTRAL	NA	1	COL17A1
TCGA.AA.A00N.01A	10	105803233	106136547	97	-0.2167	NEUTRAL	NA	7	"CFAP43,CFAP58,COL17A1,GSTO1,GSTO2,ITPRIP,SFR1"
TCGA.AA.A01Q.01A	10	105803522	105815048	15	-0.3698	NEUTRAL	NA	1	COL17A1
TCGA.AA.A017.01A	10	105811843	115340337	325	0.0731	NEUTRAL	NA	27	"ACSL5,ADD3,ADRA2A,BBIP1,CFAP43,CFAP58,COL17A1,DUSP5,GPAM,GSTO1,GSTO2,HABP2,ITPRIP,MXI1,PDCD4,RBM20,SFR1,SHOC2,SMC3,SMNDC1,SORCS1,SORCS3,TCF7L2,TECTB,VTI1A,XPNPEP1,ZDHHC6"
TCGA.AA.A01Q.01A	10	105815533	114900911	312	0.1483	NEUTRAL	NA	26	"ACSL5,ADD3,ADRA2A,BBIP1,CFAP43,CFAP58,COL17A1,DUSP5,GPAM,GSTO1,GSTO2,ITPRIP,MXI1,PDCD4,RBM20,SFR1,SHOC2,SMC3,SMNDC1,SORCS1,SORCS3,TCF7L2,TECTB,VTI1A,XPNPEP1,ZDHHC6"
TCGA.A6.3808.01A	10	105819838	112338329	198	0.3142	NEUTRAL	NA	15	"ADD3,CFAP43,CFAP58,COL17A1,DUSP5,GSTO1,GSTO2,ITPRIP,MXI1,SFR1,SMC3,SMNDC1,SORCS1,SORCS3,XPNPEP1"
TCGA.AG.3909.01A	10	105821098	105840319	12	-0.0599	NEUTRAL	NA	1	COL17A1
TCGA.AA.A02H.01A	10	105838221	105893329	9	-0.0493	NEUTRAL	NA	3	"CFAP43,COL17A1,SFR1"
TCGA.AA.A01K.01A	10	105889858	128780158	1185	0.0956	NEUTRAL	NA	113	Too-Many
TCGA.AA.A010.01A	10	105893329	105932127	16	-0.006	NEUTRAL	NA	1	CFAP43
TCGA.AG.A00C.01A	10	105900578	105907612	6	0.0929	NEUTRAL	NA	1	CFAP43
TCGA.AG.3909.01A	10	105905211	106014627	33	-0.1202	NEUTRAL	NA	2	"CFAP43,GSTO1"
TCGA.AA.A02H.01A	10	105907612	114177553	243	0.1321	NEUTRAL	NA	21	"ACSL5,ADD3,ADRA2A,BBIP1,CFAP43,CFAP58,DUSP5,GPAM,GSTO1,GSTO2,ITPRIP,MXI1,PDCD4,RBM20,SHOC2,SMC3,SMNDC1,SORCS1,SORCS3,TECTB,XPNPEP1"
TCGA.AG.A00C.01A	10	105912323	105963354	21	-0.215	NEUTRAL	NA	1	CFAP43
TCGA.AA.A010.01A	10	105953569	105990301	11	0.2332	NEUTRAL	NA	1	CFAP43
TCGA.AG.A00C.01A	10	105965655	106130616	28	0.1362	NEUTRAL	NA	5	"CFAP43,CFAP58,GSTO1,GSTO2,ITPRIP"
TCGA.AA.3989	10	106031194	110702425	1838	-0.3419	NEUTRAL	NA	5	"CFAP58,GSTO2,ITPRIP,SORCS1,SORCS3"
TCGA.AA.A010.01A	10	106118102	106960866	34	-0.2955	NEUTRAL	NA	2	"CFAP58,SORCS3"
TCGA.AG.3909.01A	10	106121743	111967520	101	0.2496	NEUTRAL	NA	6	"ADD3,CFAP58,MXI1,SORCS1,SORCS3,XPNPEP1"
TCGA.AG.A00C.01A	10	106136547	111892019	93	-0.2844	NEUTRAL	NA	5	"ADD3,CFAP58,SORCS1,SORCS3,XPNPEP1"
TCGA.AA.A02F.01A	10	106209777	124402608	891	0.1448	NEUTRAL	NA	77	"ABLIM1,ACSL5,ADD3,ADRA2A,ADRB1,AFAP1L2,ARMS2,ATE1,ATRNL1,BAG3,BBIP1,BTBD16,C10orf82,CACUL1,CASP7,CCDC172,CCDC186,CFAP58,DCLRE1A,DMBT1,DUSP5,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM45A,FGFR2,GFRA1,GPAM,GRK5,HABP2,HSPA12A,HTRA1,INPP5F,KCNK18,KIAA1598,MCMBP,MXI1,NANOS1,NHLRC2,NRAP,NSMCE4A,PDCD4,PDZD8,PLEKHA1,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,RAB11FIP2,RBM20,RGS10,SEC23IP,SFXN4,SHOC2,SLC18A2,SMC3,SMNDC1,SORCS1,SORCS3,TACC2,TCF7L2,TDRD1,TECTB,TIAL1,TRUB1,VAX1,VTI1A,VWA2,WDR11,XPNPEP1,ZDHHC6"
TCGA.AA.A00D.01A	10	106602513	111651433	68	-0.3393	NEUTRAL	NA	3	"SORCS1,SORCS3,XPNPEP1"
TCGA.AA.3844	10	106719870	110702425	1541	-0.4012	NEUTRAL	NA	2	"SORCS1,SORCS3"
TCGA.AA.3982	10	106767802	108214135	528	-0.441	NEUTRAL	NA	1	SORCS3
TCGA.AA.A010.01A	10	106970866	111648221	52	0.1413	NEUTRAL	NA	3	"SORCS1,SORCS3,XPNPEP1"
TCGA.CK.5914.01A	10	107005258	107023031	7	-0.5122	NEUTRAL	NA	1	SORCS3
TCGA.AA.3811	10	107050726	111276985	1590	-0.3768	NEUTRAL	NA	1	SORCS1
TCGA.G4.6323	10	107146990	135434550	11149	-0.0214	NEUTRAL	NA	144	Too-Many
TCGA.AA.3864	10	107700218	107783047	35	-0.1444	NEUTRAL	NA	0	None
TCGA.AA.3845	10	107700218	135434550	10938	0.0557	NEUTRAL	NA	144	Too-Many
TCGA.AA.3864	10	107836677	110702425	1139	-0.0993	NEUTRAL	NA	1	SORCS1
TCGA.BM.6198	10	107860460	135434550	10903	-0.46865	NEUTRAL	NA	144	Too-Many
TCGA.5M.AAT5	10	107889803	135434550	10888	-0.1801	NEUTRAL	NA	144	Too-Many
TCGA.CM.6675	10	107922947	135434550	10841	0.0154	NEUTRAL	NA	144	Too-Many
TCGA.AG.3592	10	107938073	135434550	10872	-0.0386	NEUTRAL	NA	144	Too-Many
TCGA.AY.A8YK	10	108154741	109870192	719	-0.4683	NEUTRAL	NA	1	SORCS1
TCGA.AA.3982	10	108216283	111563050	1263	-0.3209	NEUTRAL	NA	1	SORCS1
TCGA.AA.3941	10	108241233	108474864	93	-0.0595	NEUTRAL	NA	1	SORCS1
TCGA.CA.5254	10	108363461	111935177	1287	0.2007	NEUTRAL	NA	3	"ADD3,SORCS1,XPNPEP1"
TCGA.CK.5914.01A	10	108468932	111639871	16	0.1242	NEUTRAL	NA	2	"SORCS1,XPNPEP1"
TCGA.AA.3941	10	108476106	108752206	113	0.2414	NEUTRAL	NA	1	SORCS1
TCGA.EI.7004	10	108522655	108982777	198	-0.4066	NEUTRAL	NA	1	SORCS1
TCGA.AM.5820	10	108663388	125711881	6652	0.0583	NEUTRAL	NA	88	"ABLIM1,ACADSB,ACSL5,ADD3,ADRA2A,ADRB1,AFAP1L2,ARMS2,ATE1,ATRNL1,BAG3,BBIP1,BTBD16,BUB3,C10orf120,C10orf82,C10orf88,CACUL1,CASP7,CCDC172,CCDC186,CPXM2,CUZD1,DCLRE1A,DMBT1,DUSP5,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM24A,FAM24B,FAM45A,FGFR2,GFRA1,GPAM,GPR26,GRK5,HABP2,HMX2,HMX3,HSPA12A,HTRA1,IKZF5,INPP5F,KCNK18,KIAA1598,MCMBP,MXI1,NANOS1,NHLRC2,NRAP,NSMCE4A,PDCD4,PDZD8,PLEKHA1,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,PSTK,RAB11FIP2,RBM20,RGS10,SEC23IP,SFXN4,SHOC2,SLC18A2,SMC3,SMNDC1,SORCS1,TACC2,TCF7L2,TDRD1,TECTB,TIAL1,TRUB1,VAX1,VTI1A,VWA2,WDR11,XPNPEP1,ZDHHC6"
TCGA.AA.3941	10	108756503	108788669	10	-0.0884	NEUTRAL	NA	1	SORCS1
TCGA.AA.3941	10	108792941	108809523	7	0.1138	NEUTRAL	NA	1	SORCS1
TCGA.AA.3941	10	108843572	109028743	75	-0.0786	NEUTRAL	NA	1	SORCS1
TCGA.AY.A54L.01A	10	108923710	135440021	1595	0.221	NEUTRAL	NA	145	Too-Many
TCGA.EI.7004	10	108982947	129661951	8098	0.0448	NEUTRAL	NA	109	Too-Many
TCGA.AA.3941	10	109060817	109104039	17	-0.0747	NEUTRAL	NA	0	None
TCGA.AA.3518	10	109130971	109213797	53	-0.4072	NEUTRAL	NA	0	None
TCGA.DM.A1D0	10	109132351	134287345	10080	0.0279	NEUTRAL	NA	124	Too-Many
TCGA.A6.2682	10	109159502	135434550	10196	0.0161	NEUTRAL	NA	143	Too-Many
TCGA.AA.3518	10	109214277	135434550	10308	0.0175	NEUTRAL	NA	143	Too-Many
TCGA.AD.6965	10	109536710	112006407	804	-0.0198	NEUTRAL	NA	3	"ADD3,MXI1,XPNPEP1"
TCGA.AY.A8YK	10	109871171	135434550	10051	-0.0875	NEUTRAL	NA	143	Too-Many
TCGA.AZ.4616	10	110158701	112753720	820	8.00E-04	NEUTRAL	NA	10	"ADD3,BBIP1,DUSP5,MXI1,PDCD4,RBM20,SHOC2,SMC3,SMNDC1,XPNPEP1"
TCGA.EI.6513	10	110233496	132325384	8803	-0.0137	NEUTRAL	NA	115	Too-Many
TCGA.AA.3941	10	110707824	111485426	240	-0.3427	NEUTRAL	NA	0	None
TCGA.AA.3844	10	110707824	111563050	268	-0.3569	NEUTRAL	NA	0	None
TCGA.AA.3989	10	110707824	114407315	1308	-0.2575	NEUTRAL	NA	16	"ACSL5,ADD3,ADRA2A,BBIP1,DUSP5,GPAM,MXI1,PDCD4,RBM20,SHOC2,SMC3,SMNDC1,TECTB,VTI1A,XPNPEP1,ZDHHC6"
TCGA.AA.3842	10	110707824	135434550	9756	0.086	NEUTRAL	NA	143	Too-Many
TCGA.AA.3956	10	110707824	135434550	9752	0.0527	NEUTRAL	NA	143	Too-Many
TCGA.AA.3864	10	110717905	135434550	9735	0.0944	NEUTRAL	NA	143	Too-Many
TCGA.RU.A8FL	10	111113126	135434550	9626	-0.1404	NEUTRAL	NA	143	Too-Many
TCGA.AA.3811	10	111289798	113366520	760	0.0509	NEUTRAL	NA	11	"ADD3,ADRA2A,BBIP1,DUSP5,MXI1,PDCD4,RBM20,SHOC2,SMC3,SMNDC1,XPNPEP1"
TCGA.AA.3850	10	111483168	112000965	126	0.12955	NEUTRAL	NA	3	"ADD3,MXI1,XPNPEP1"
TCGA.AA.3941	10	111487045	111989324	120	0.2343	NEUTRAL	NA	3	"ADD3,MXI1,XPNPEP1"
TCGA.AA.3844	10	111583695	111989324	93	0.1005	NEUTRAL	NA	3	"ADD3,MXI1,XPNPEP1"
TCGA.AA.3982	10	111583695	111989324	93	0.1727	NEUTRAL	NA	3	"ADD3,MXI1,XPNPEP1"
TCGA.AA.A00N.01A	10	111651433	112044565	27	0.2607	NEUTRAL	NA	3	"ADD3,MXI1,XPNPEP1"
TCGA.AA.A00D.01A	10	111652712	112337535	35	0.0695	NEUTRAL	NA	6	"ADD3,DUSP5,MXI1,SMC3,SMNDC1,XPNPEP1"
TCGA.CK.5914.01A	10	111667401	112044565	25	0.2059	NEUTRAL	NA	3	"ADD3,MXI1,XPNPEP1"
TCGA.AA.A010.01A	10	111713467	111893062	14	0.3752	NEUTRAL	NA	1	ADD3
TCGA.AG.A00C.01A	10	111893062	113941403	87	0.1296	NEUTRAL	NA	11	"ADD3,ADRA2A,BBIP1,DUSP5,GPAM,MXI1,PDCD4,RBM20,SHOC2,SMC3,SMNDC1"
TCGA.CA.5254	10	111935289	112154109	61	-0.1098	NEUTRAL	NA	2	"MXI1,SMNDC1"
TCGA.AA.3941	10	112006407	112072177	15	-0.1171	NEUTRAL	NA	2	"MXI1,SMNDC1"
TCGA.AA.3850	10	112006407	112630856	258	0.26235	NEUTRAL	NA	5	"DUSP5,MXI1,RBM20,SMC3,SMNDC1"
TCGA.AA.3844	10	112013273	112647194	258	0.0353	NEUTRAL	NA	6	"DUSP5,MXI1,PDCD4,RBM20,SMC3,SMNDC1"
TCGA.AA.3982	10	112016925	112112951	20	-0.0365	NEUTRAL	NA	2	"MXI1,SMNDC1"
TCGA.AD.6965	10	112019687	114244743	891	0.0353	NEUTRAL	NA	14	"ACSL5,ADRA2A,BBIP1,DUSP5,GPAM,MXI1,PDCD4,RBM20,SHOC2,SMC3,SMNDC1,TECTB,VTI1A,ZDHHC6"
TCGA.AA.3556	10	112066694	115198871	1198	0.0191	NEUTRAL	NA	13	"ACSL5,ADRA2A,BBIP1,DUSP5,GPAM,PDCD4,RBM20,SHOC2,SMC3,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.CA.5254	10	112166211	112504720	148	-0.1926	NEUTRAL	NA	3	"DUSP5,RBM20,SMC3"
TCGA.AA.3526	10	112166211	135434550	9339	-0.0046	NEUTRAL	NA	139	Too-Many
TCGA.AG.3731	10	112223285	115476859	1294	0.0517	NEUTRAL	NA	16	"ACSL5,ADRA2A,BBIP1,CASP7,DUSP5,GPAM,HABP2,NRAP,PDCD4,RBM20,SHOC2,SMC3,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.AG.4009.01A	10	112269800	120916133	537	-0.0526	NEUTRAL	NA	51	"ABLIM1,ACSL5,ADRA2A,ADRB1,AFAP1L2,ATRNL1,BBIP1,C10orf82,CACUL1,CASP7,CCDC172,CCDC186,DCLRE1A,DUSP5,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM45A,GFRA1,GPAM,HABP2,HSPA12A,KCNK18,KIAA1598,NANOS1,NHLRC2,NRAP,PDCD4,PDZD8,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRLHR,RAB11FIP2,RBM20,SFXN4,SHOC2,SLC18A2,SMC3,TCF7L2,TDRD1,TECTB,TRUB1,VAX1,VTI1A,VWA2,ZDHHC6"
TCGA.AA.3982	10	112284335	113506078	539	0.0119	NEUTRAL	NA	6	"ADRA2A,BBIP1,PDCD4,RBM20,SHOC2,SMC3"
TCGA.AG.3909.01A	10	112343562	112580991	19	-0.0407	NEUTRAL	NA	2	"RBM20,SMC3"
TCGA.AA.A00N.01A	10	112343924	112595574	32	0.2543	NEUTRAL	NA	2	"RBM20,SMC3"
TCGA.AA.A010.01A	10	112350698	112595574	28	0.2265	NEUTRAL	NA	2	"RBM20,SMC3"
TCGA.CK.5914.01A	10	112360728	114181653	86	0.1257	NEUTRAL	NA	9	"ACSL5,ADRA2A,BBIP1,GPAM,PDCD4,RBM20,SHOC2,SMC3,TECTB"
TCGA.CA.5254	10	112507306	113000316	182	0.1716	NEUTRAL	NA	5	"ADRA2A,BBIP1,PDCD4,RBM20,SHOC2"
TCGA.AA.3862.01A	10	112543053	112580991	10	0.2702	NEUTRAL	NA	1	RBM20
TCGA.AA.3861.01A	10	112544075	129875843	1145	-0.3095	NEUTRAL	NA	105	Too-Many
TCGA.AA.3862.01A	10	112583206	120810671	520	-0.3445	NEUTRAL	NA	47	"ABLIM1,ACSL5,ADRA2A,ADRB1,AFAP1L2,ATRNL1,BBIP1,C10orf82,CACUL1,CASP7,CCDC172,CCDC186,DCLRE1A,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,GFRA1,GPAM,HABP2,HSPA12A,KCNK18,KIAA1598,NANOS1,NHLRC2,NRAP,PDCD4,PDZD8,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRLHR,RAB11FIP2,RBM20,SHOC2,SLC18A2,TCF7L2,TDRD1,TECTB,TRUB1,VAX1,VTI1A,VWA2,ZDHHC6"
TCGA.AA.3941	10	112608096	112668252	25	0.0716	NEUTRAL	NA	2	"BBIP1,PDCD4"
TCGA.AA.3850	10	112633917	112764593	26	-0.48705	NEUTRAL	NA	3	"BBIP1,PDCD4,SHOC2"
TCGA.A6.3808.01A	10	112642730	115981077	229	0.2028	NEUTRAL	NA	19	"ACSL5,ADRA2A,ADRB1,BBIP1,CASP7,CCDC186,DCLRE1A,GPAM,HABP2,NHLRC2,NRAP,PDCD4,PLEKHS1,SHOC2,TCF7L2,TDRD1,TECTB,VTI1A,ZDHHC6"
TCGA.F4.6704	10	112647194	123193837	4099	0.0484	NEUTRAL	NA	58	"ABLIM1,ACSL5,ADRA2A,ADRB1,AFAP1L2,ATRNL1,BAG3,BBIP1,C10orf82,CACUL1,CASP7,CCDC172,CCDC186,DCLRE1A,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM45A,GFRA1,GPAM,GRK5,HABP2,HSPA12A,INPP5F,KCNK18,KIAA1598,MCMBP,NANOS1,NHLRC2,NRAP,PDCD4,PDZD8,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,RAB11FIP2,RGS10,SEC23IP,SFXN4,SHOC2,SLC18A2,TCF7L2,TDRD1,TECTB,TIAL1,TRUB1,VAX1,VTI1A,VWA2,WDR11,ZDHHC6"
TCGA.AA.3844	10	112647760	112763155	19	-0.4303	NEUTRAL	NA	3	"BBIP1,PDCD4,SHOC2"
TCGA.AA.3941	10	112694029	112890916	53	0.2767	NEUTRAL	NA	2	"ADRA2A,SHOC2"
TCGA.D5.6537	10	112694029	135434550	9086	-0.0541	NEUTRAL	NA	134	Too-Many
TCGA.AG.3611.01A	10	112724100	112837754	9	-0.139	NEUTRAL	NA	2	"ADRA2A,SHOC2"
TCGA.AG.3909.01A	10	112724100	113920315	18	-0.0335	NEUTRAL	NA	3	"ADRA2A,GPAM,SHOC2"
TCGA.AA.A00N.01A	10	112724100	113928043	22	0.3189	NEUTRAL	NA	3	"ADRA2A,GPAM,SHOC2"
TCGA.AA.A00D.01A	10	112724100	115664539	179	-0.0785	NEUTRAL	NA	14	"ACSL5,ADRA2A,CASP7,DCLRE1A,GPAM,HABP2,NHLRC2,NRAP,PLEKHS1,SHOC2,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.AA.A010.01A	10	112745339	114171171	45	-0.0035	NEUTRAL	NA	5	"ACSL5,ADRA2A,GPAM,SHOC2,TECTB"
TCGA.AZ.4616	10	112754478	135434550	9097	0.2959	NEUTRAL	NA	134	Too-Many
TCGA.AA.3844	10	112763384	112912498	52	0.1279	NEUTRAL	NA	2	"ADRA2A,SHOC2"
TCGA.AA.3850	10	112765174	112887548	39	0.29115	NEUTRAL	NA	2	"ADRA2A,SHOC2"
TCGA.AG.3611.01A	10	112838343	114043429	22	-0.4225	NEUTRAL	NA	3	"ADRA2A,GPAM,TECTB"
TCGA.AA.3850	10	112890916	113102364	112	-0.24925	NEUTRAL	NA	0	None
TCGA.AA.3941	10	112894868	113778102	418	-0.1573	NEUTRAL	NA	0	None
TCGA.AA.3844	10	112914838	112931048	11	-0.4842	NEUTRAL	NA	0	None
TCGA.AA.3844	10	112936139	113876650	424	-0.2089	NEUTRAL	NA	0	None
TCGA.CA.5254	10	113003816	114650423	650	-0.1247	NEUTRAL	NA	5	"ACSL5,GPAM,TECTB,VTI1A,ZDHHC6"
TCGA.AA.3850	10	113119669	113757926	296	-0.24685	NEUTRAL	NA	0	None
TCGA.AA.3811	10	113367547	113700808	140	-0.3904	NEUTRAL	NA	0	None
TCGA.AA.3982	10	113515046	113855269	139	-0.2411	NEUTRAL	NA	0	None
TCGA.AA.3977	10	113515046	115887603	903	0.1202	NEUTRAL	NA	14	"ACSL5,ADRB1,CASP7,CCDC186,DCLRE1A,GPAM,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.AA.3522	10	113616759	114294891	235	0.2938	NEUTRAL	NA	5	"ACSL5,GPAM,TECTB,VTI1A,ZDHHC6"
TCGA.D5.7000	10	113616759	133136538	8071	-0.0129	NEUTRAL	NA	105	Too-Many
TCGA.AA.3811	10	113701012	116709222	1120	0.0476	NEUTRAL	NA	20	"ABLIM1,ACSL5,ADRB1,AFAP1L2,CASP7,CCDC186,DCLRE1A,FAM160B1,GPAM,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TDRD1,TECTB,TRUB1,VTI1A,VWA2,ZDHHC6"
TCGA.AA.3850	10	113758888	116856070	1129	0.18545	NEUTRAL	NA	21	"ABLIM1,ACSL5,ADRB1,AFAP1L2,ATRNL1,CASP7,CCDC186,DCLRE1A,FAM160B1,GPAM,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TDRD1,TECTB,TRUB1,VTI1A,VWA2,ZDHHC6"
TCGA.AA.3941	10	113782833	116806498	1110	0.297	NEUTRAL	NA	20	"ABLIM1,ACSL5,ADRB1,AFAP1L2,CASP7,CCDC186,DCLRE1A,FAM160B1,GPAM,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TDRD1,TECTB,TRUB1,VTI1A,VWA2,ZDHHC6"
TCGA.AA.3982	10	113857978	116806498	1090	0.1451	NEUTRAL	NA	20	"ABLIM1,ACSL5,ADRB1,AFAP1L2,CASP7,CCDC186,DCLRE1A,FAM160B1,GPAM,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TDRD1,TECTB,TRUB1,VTI1A,VWA2,ZDHHC6"
TCGA.AA.3844	10	113877812	115135421	401	0.0628	NEUTRAL	NA	6	"ACSL5,GPAM,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.AG.3909.01A	10	113921369	113928043	5	-0.3875	NEUTRAL	NA	1	GPAM
TCGA.AA.A00F.01A	10	113932675	113941403	6	0.1171	NEUTRAL	NA	1	GPAM
TCGA.AG.3909.01A	10	114043429	114905719	52	0.0598	NEUTRAL	NA	5	"ACSL5,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.AG.A00C.01A	10	114043429	115540313	134	-0.1924	NEUTRAL	NA	9	"ACSL5,CASP7,HABP2,NRAP,PLEKHS1,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.AA.A00F.01A	10	114043429	116444013	240	-0.2922	NEUTRAL	NA	17	"ABLIM1,ACSL5,ADRB1,AFAP1L2,CASP7,CCDC186,DCLRE1A,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TDRD1,TECTB,VTI1A,VWA2,ZDHHC6"
TCGA.AG.3611.01A	10	114044265	135341947	1148	-0.0837	NEUTRAL	NA	130	Too-Many
TCGA.AA.3509.01A	10	114045792	115614590	145	0.0052	NEUTRAL	NA	11	"ACSL5,CASP7,DCLRE1A,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.F4.6461	10	114061524	115030623	281	-0.4902	NEUTRAL	NA	5	"ACSL5,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.AA.A02H.01A	10	114181296	115345505	50	-0.2568	NEUTRAL	NA	5	"ACSL5,HABP2,TCF7L2,VTI1A,ZDHHC6"
TCGA.CK.5914.01A	10	114207107	115370171	51	0.1383	NEUTRAL	NA	4	"HABP2,NRAP,TCF7L2,VTI1A"
TCGA.AA.3818	10	114270473	114880341	173	-0.4834	NEUTRAL	NA	2	"TCF7L2,VTI1A"
TCGA.AA.3522	10	114318064	135434550	8485	-0.3601	NEUTRAL	NA	128	Too-Many
TCGA.G4.6588	10	114342158	135434550	8483	-0.0253	NEUTRAL	NA	128	Too-Many
TCGA.CA.5254	10	114652694	115063053	91	0.1975	NEUTRAL	NA	1	TCF7L2
TCGA.AA.A00N.01A	10	114710498	114920314	16	-0.1229	NEUTRAL	NA	1	TCF7L2
TCGA.AG.3890	10	114742834	135434550	8323	-0.1058	NEUTRAL	NA	127	Too-Many
TCGA.AA.A010.01A	10	114799752	114920314	12	-0.1133	NEUTRAL	NA	1	TCF7L2
TCGA.AA.3818	10	114880550	135232653	8243	-0.028	NEUTRAL	NA	124	Too-Many
TCGA.AD.6965	10	114882670	135434550	8313	0.003	NEUTRAL	NA	127	Too-Many
TCGA.CK.6748	10	114892467	135434550	8309	-0.0224	NEUTRAL	NA	127	Too-Many
TCGA.AA.A01Q.01A	10	114903635	115348683	23	-0.1871	NEUTRAL	NA	3	"HABP2,NRAP,TCF7L2"
TCGA.AA.3989	10	114920088	118056882	1176	-0.2604	NEUTRAL	NA	17	"ABLIM1,ADRB1,AFAP1L2,ATRNL1,CASP7,CCDC186,DCLRE1A,FAM160B1,GFRA1,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TDRD1,TRUB1,VWA2"
TCGA.F4.6461	10	115033943	128903999	5565	-0.0191	NEUTRAL	NA	89	"ABLIM1,ACADSB,ADAM12,ADRB1,AFAP1L2,ARMS2,ATE1,ATRNL1,BAG3,BCCIP,BTBD16,BUB3,C10orf120,C10orf82,C10orf88,C10orf90,CACUL1,CASP7,CCDC172,CCDC186,CHST15,CPXM2,CTBP2,CUZD1,DCLRE1A,DHX32,DMBT1,DOCK1,EDRF1,EIF3A,EMX2,ENO4,FAM160B1,FAM175B,FAM204A,FAM24A,FAM24B,FAM45A,FAM53B,FANK1,FGFR2,GFRA1,GPR26,GRK5,HABP2,HMX2,HMX3,HSPA12A,HTRA1,IKZF5,INPP5F,KCNK18,KIAA1598,LHPP,MCMBP,METTL10,MMP21,NANOS1,NHLRC2,NKX1-2,NRAP,NSMCE4A,OAT,PDZD8,PLEKHA1,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,PSTK,RAB11FIP2,RGS10,SEC23IP,SFXN4,SLC18A2,TACC2,TDRD1,TEX36,TIAL1,TRUB1,UROS,VAX1,VWA2,WDR11,ZRANB1"
TCGA.AG.4021	10	115061138	122880680	3049	-0.0031	NEUTRAL	NA	48	"ABLIM1,ADRB1,AFAP1L2,ATRNL1,BAG3,C10orf82,CACUL1,CASP7,CCDC172,CCDC186,DCLRE1A,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM45A,GFRA1,GRK5,HABP2,HSPA12A,INPP5F,KCNK18,KIAA1598,MCMBP,NANOS1,NHLRC2,NRAP,PDZD8,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,RAB11FIP2,RGS10,SEC23IP,SFXN4,SLC18A2,TDRD1,TIAL1,TRUB1,VAX1,VWA2,WDR11"
TCGA.CA.5254	10	115064196	115675024	320	-0.1371	NEUTRAL	NA	6	"CASP7,DCLRE1A,HABP2,NHLRC2,NRAP,PLEKHS1"
TCGA.AA.3844	10	115146943	115887603	352	0.028	NEUTRAL	NA	8	"ADRB1,CASP7,CCDC186,DCLRE1A,HABP2,NHLRC2,NRAP,PLEKHS1"
TCGA.AA.3556	10	115203304	126427036	4490	0.0043	NEUTRAL	NA	75	"ABLIM1,ACADSB,ADRB1,AFAP1L2,ARMS2,ATE1,ATRNL1,BAG3,BTBD16,BUB3,C10orf120,C10orf82,C10orf88,CACUL1,CASP7,CCDC172,CCDC186,CHST15,CPXM2,CUZD1,DCLRE1A,DMBT1,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM24A,FAM24B,FAM45A,FAM53B,FGFR2,GFRA1,GPR26,GRK5,HABP2,HMX2,HMX3,HSPA12A,HTRA1,IKZF5,INPP5F,KCNK18,KIAA1598,LHPP,MCMBP,NANOS1,NHLRC2,NKX1-2,NRAP,NSMCE4A,OAT,PDZD8,PLEKHA1,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,PSTK,RAB11FIP2,RGS10,SEC23IP,SFXN4,SLC18A2,TACC2,TDRD1,TIAL1,TRUB1,VAX1,VWA2,WDR11"
TCGA.AA.3837	10	115235655	135434550	8178	-0.0102	NEUTRAL	NA	126	Too-Many
TCGA.AA.3852	10	115235655	135434550	8179	-0.0391	NEUTRAL	NA	126	Too-Many
TCGA.EI.6514	10	115242530	135434550	8164	-0.1726	NEUTRAL	NA	126	Too-Many
TCGA.AA.A017.01A	10	115343859	116590553	173	0.0292	NEUTRAL	NA	13	"ABLIM1,ADRB1,AFAP1L2,CASP7,CCDC186,DCLRE1A,FAM160B1,HABP2,NHLRC2,NRAP,PLEKHS1,TDRD1,VWA2"
TCGA.AA.A01Q.01A	10	115349388	116038430	124	0.2082	NEUTRAL	NA	9	"ADRB1,CASP7,CCDC186,DCLRE1A,NHLRC2,NRAP,PLEKHS1,TDRD1,VWA2"
TCGA.AA.A010.01A	10	115373893	115389295	11	0.3387	NEUTRAL	NA	1	NRAP
TCGA.AA.A024.01A	10	115385789	127526768	838	-0.0109	NEUTRAL	NA	84	"ABLIM1,ACADSB,ADRB1,AFAP1L2,ARMS2,ATE1,ATRNL1,BAG3,BCCIP,BTBD16,BUB3,C10orf120,C10orf82,C10orf88,CACUL1,CASP7,CCDC172,CCDC186,CHST15,CPXM2,CTBP2,CUZD1,DCLRE1A,DHX32,DMBT1,EDRF1,EIF3A,EMX2,ENO4,FAM160B1,FAM175B,FAM204A,FAM24A,FAM24B,FAM45A,FAM53B,FGFR2,GFRA1,GPR26,GRK5,HMX2,HMX3,HSPA12A,HTRA1,IKZF5,INPP5F,KCNK18,KIAA1598,LHPP,MCMBP,METTL10,MMP21,NANOS1,NHLRC2,NKX1-2,NRAP,NSMCE4A,OAT,PDZD8,PLEKHA1,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,PSTK,RAB11FIP2,RGS10,SEC23IP,SFXN4,SLC18A2,TACC2,TDRD1,TEX36,TIAL1,TRUB1,UROS,VAX1,VWA2,WDR11,ZRANB1"
TCGA.AA.A02H.01A	10	115389295	115618240	50	0.0159	NEUTRAL	NA	5	"CASP7,DCLRE1A,NHLRC2,NRAP,PLEKHS1"
TCGA.AH.6897	10	115390615	135434550	8067	-0.0117	NEUTRAL	NA	125	Too-Many
TCGA.AA.A010.01A	10	115391226	115451693	19	-0.131	NEUTRAL	NA	2	"CASP7,NRAP"
TCGA.AG.3909.01A	10	115412642	115481408	10	-0.2107	NEUTRAL	NA	2	"CASP7,NRAP"
TCGA.CK.5914.01A	10	115417191	115602050	28	0.17	NEUTRAL	NA	4	"CASP7,DCLRE1A,NRAP,PLEKHS1"
TCGA.DM.A0XF	10	115431239	135434550	8043	0.3085	NEUTRAL	NA	124	Too-Many
TCGA.AA.3696	10	115438203	135434550	8050	-0.0384	NEUTRAL	NA	124	Too-Many
TCGA.AA.A010.01A	10	115457226	115535497	16	0.2684	NEUTRAL	NA	2	"CASP7,PLEKHS1"
TCGA.AG.3909.01A	10	115485073	115540313	16	0.1775	NEUTRAL	NA	2	"CASP7,PLEKHS1"
TCGA.AG.3731	10	115567559	135434550	7985	-0.0315	NEUTRAL	NA	122	Too-Many
TCGA.AG.A01W.01A	10	115584880	115604595	11	0.0705	NEUTRAL	NA	1	DCLRE1A
TCGA.AG.3909.01A	10	115594884	115596804	2	-0.3965	NEUTRAL	NA	1	DCLRE1A
TCGA.AG.A00C.01A	10	115594884	116062068	75	0.1032	NEUTRAL	NA	7	"ADRB1,AFAP1L2,CCDC186,DCLRE1A,NHLRC2,TDRD1,VWA2"
TCGA.AG.A01W.01A	10	115608231	115647812	5	-0.4318	NEUTRAL	NA	2	"DCLRE1A,NHLRC2"
TCGA.AA.A010.01A	10	115636243	115986794	47	-0.4034	NEUTRAL	NA	4	"ADRB1,CCDC186,NHLRC2,TDRD1"
TCGA.AG.3909.01A	10	115636243	116045676	57	-0.1191	NEUTRAL	NA	5	"ADRB1,CCDC186,NHLRC2,TDRD1,VWA2"
TCGA.CK.5914.01A	10	115636243	116050889	62	0.3067	NEUTRAL	NA	5	"ADRB1,CCDC186,NHLRC2,TDRD1,VWA2"
TCGA.AG.A01W.01A	10	115651386	115794401	7	0.1246	NEUTRAL	NA	1	NHLRC2
TCGA.AA.A00D.01A	10	115667992	115917266	15	-0.501	NEUTRAL	NA	3	"ADRB1,CCDC186,NHLRC2"
TCGA.CA.5254	10	115677790	115738501	38	0.2871	NEUTRAL	NA	0	None
TCGA.CA.5254	10	115739408	115959621	59	-0.149	NEUTRAL	NA	3	"ADRB1,CCDC186,TDRD1"
TCGA.AA.3509.01A	10	115803843	116889042	130	0.065	NEUTRAL	NA	9	"ABLIM1,ADRB1,AFAP1L2,ATRNL1,CCDC186,FAM160B1,TDRD1,TRUB1,VWA2"
TCGA.AZ.4684.01A	10	115803843	116889042	130	-0.052	NEUTRAL	NA	9	"ABLIM1,ADRB1,AFAP1L2,ATRNL1,CCDC186,FAM160B1,TDRD1,TRUB1,VWA2"
TCGA.3L.AA1B	10	115844948	135434550	7877	-0.1224	NEUTRAL	NA	119	Too-Many
TCGA.AA.A02O	10	115875134	135434550	7862	-0.0188	NEUTRAL	NA	119	Too-Many
TCGA.AG.A01W.01A	10	115886887	115975782	27	-0.1352	NEUTRAL	NA	2	"CCDC186,TDRD1"
TCGA.AA.3844	10	115899971	116806498	321	0.0648	NEUTRAL	NA	7	"ABLIM1,AFAP1L2,CCDC186,FAM160B1,TDRD1,TRUB1,VWA2"
TCGA.AA.3977	10	115899971	135434550	7842	0.0846	NEUTRAL	NA	119	Too-Many
TCGA.AA.A00N.01A	10	115910810	115980330	21	-0.433	NEUTRAL	NA	2	"CCDC186,TDRD1"
TCGA.AA.A00D.01A	10	115922374	115991170	24	0.2996	NEUTRAL	NA	2	"CCDC186,TDRD1"
TCGA.CA.5254	10	115959933	116935114	343	0.2115	NEUTRAL	NA	7	"ABLIM1,AFAP1L2,ATRNL1,FAM160B1,TDRD1,TRUB1,VWA2"
TCGA.AA.A02H.01A	10	115985781	116082875	26	-0.2255	NEUTRAL	NA	3	"AFAP1L2,TDRD1,VWA2"
TCGA.AA.A00D.01A	10	116008407	123243174	378	-0.0342	NEUTRAL	NA	40	"ABLIM1,AFAP1L2,ATRNL1,BAG3,C10orf82,CACUL1,CCDC172,EIF3A,EMX2,ENO4,FAM160B1,FAM204A,FAM45A,FGFR2,GFRA1,GRK5,HSPA12A,INPP5F,KCNK18,KIAA1598,MCMBP,NANOS1,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,RAB11FIP2,RGS10,SEC23IP,SFXN4,SLC18A2,TIAL1,TRUB1,VAX1,VWA2,WDR11"
TCGA.AA.A00N.01A	10	116014632	116050889	11	0.2539	NEUTRAL	NA	1	VWA2
TCGA.A6.3808.01A	10	116020907	118466692	184	0.322	NEUTRAL	NA	14	"ABLIM1,AFAP1L2,ATRNL1,C10orf82,CCDC172,FAM160B1,GFRA1,HSPA12A,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,TRUB1,VWA2"
TCGA.AG.A01W.01A	10	116027616	116051057	11	-0.3781	NEUTRAL	NA	1	VWA2
TCGA.AA.A01Q.01A	10	116042215	116164128	21	-0.3392	NEUTRAL	NA	2	"AFAP1L2,VWA2"
TCGA.CK.5914.01A	10	116055714	116164128	18	-0.498	NEUTRAL	NA	1	AFAP1L2
TCGA.AG.A01W.01A	10	116063594	116700775	49	-0.2372	NEUTRAL	NA	4	"ABLIM1,AFAP1L2,FAM160B1,TRUB1"
TCGA.AG.A00C.01A	10	116064430	116444013	35	-0.1838	NEUTRAL	NA	2	"ABLIM1,AFAP1L2"
TCGA.AG.3909.01A	10	116073613	118357291	128	0.0924	NEUTRAL	NA	10	"ABLIM1,AFAP1L2,ATRNL1,CCDC172,FAM160B1,GFRA1,PNLIP,PNLIPRP1,PNLIPRP3,TRUB1"
TCGA.AA.A02H.01A	10	116092931	116590553	30	0.2516	NEUTRAL	NA	3	"ABLIM1,AFAP1L2,FAM160B1"
TCGA.AA.A01Q.01A	10	116195969	116719436	43	0.3068	NEUTRAL	NA	3	"ABLIM1,FAM160B1,TRUB1"
TCGA.CK.5914.01A	10	116195969	118355687	128	0.2822	NEUTRAL	NA	9	"ABLIM1,ATRNL1,CCDC172,FAM160B1,GFRA1,PNLIP,PNLIPRP1,PNLIPRP3,TRUB1"
TCGA.AA.3979	10	116405426	120490389	1433	-0.0406	NEUTRAL	NA	23	"ABLIM1,ATRNL1,C10orf82,CACUL1,CCDC172,EMX2,ENO4,FAM160B1,FAM204A,GFRA1,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRLHR,RAB11FIP2,SLC18A2,TRUB1,VAX1"
TCGA.D5.5538	10	116490627	135434550	7615	-0.0212	NEUTRAL	NA	114	Too-Many
TCGA.AA.A00F.01A	10	116590553	116595856	4	0.2094	NEUTRAL	NA	1	FAM160B1
TCGA.AG.A00C.01A	10	116590553	116603496	6	0.3736	NEUTRAL	NA	1	FAM160B1
TCGA.AA.A00F.01A	10	116602665	119774512	146	-0.3367	NEUTRAL	NA	19	"ATRNL1,C10orf82,CCDC172,EMX2,ENO4,FAM160B1,GFRA1,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,RAB11FIP2,SLC18A2,TRUB1,VAX1"
TCGA.AG.A00C.01A	10	116605085	120513861	185	-0.0557	NEUTRAL	NA	22	"ATRNL1,C10orf82,CACUL1,CCDC172,EMX2,ENO4,FAM160B1,FAM204A,GFRA1,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRLHR,RAB11FIP2,SLC18A2,TRUB1,VAX1"
TCGA.AA.A010.01A	10	116614919	118202525	63	-0.1615	NEUTRAL	NA	6	"ATRNL1,CCDC172,FAM160B1,GFRA1,PNLIPRP3,TRUB1"
TCGA.AA.3930.01A	10	116698025	118387244	93	-0.1475	NEUTRAL	NA	8	"ATRNL1,CCDC172,GFRA1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,TRUB1"
TCGA.AG.A01W.01A	10	116709417	117597362	33	0.2385	NEUTRAL	NA	2	"ATRNL1,TRUB1"
TCGA.AA.A01Q.01A	10	116730086	118236597	61	-0.0192	NEUTRAL	NA	5	"ATRNL1,CCDC172,GFRA1,PNLIPRP3,TRUB1"
TCGA.AA.3982	10	116806774	117505975	155	-0.4973	NEUTRAL	NA	1	ATRNL1
TCGA.AG.3891.01A	10	116887310	117607351	25	-0.4906	NEUTRAL	NA	1	ATRNL1
TCGA.AA.3867	10	116899263	117223604	51	-0.4915	NEUTRAL	NA	1	ATRNL1
TCGA.CA.5254	10	116936988	120998249	1454	-0.1575	NEUTRAL	NA	26	"ATRNL1,C10orf82,CACUL1,CCDC172,EIF3A,EMX2,ENO4,FAM204A,FAM45A,GFRA1,GRK5,HSPA12A,KCNK18,KIAA1598,NANOS1,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRDX3,PRLHR,RAB11FIP2,SFXN4,SLC18A2,VAX1"
TCGA.CI.6621	10	117108537	135434550	7484	-0.0672	NEUTRAL	NA	112	Too-Many
TCGA.AZ.4684.01A	10	117185709	118084758	19	-0.0308	NEUTRAL	NA	3	"ATRNL1,CCDC172,GFRA1"
TCGA.AA.3867	10	117259639	117309690	15	-0.3	NEUTRAL	NA	1	ATRNL1
TCGA.DM.A282.01A	10	117278752	135440021	1150	-0.0164	NEUTRAL	NA	113	Too-Many
TCGA.DM.A28M.01A	10	117308911	124340295	458	-0.1343	NEUTRAL	NA	43	"ARMS2,ATE1,ATRNL1,BAG3,BTBD16,C10orf82,CACUL1,CCDC172,DMBT1,EIF3A,EMX2,ENO4,FAM204A,FAM45A,FGFR2,GFRA1,GRK5,HSPA12A,HTRA1,INPP5F,KCNK18,KIAA1598,MCMBP,NANOS1,NSMCE4A,PDZD8,PLEKHA1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,RAB11FIP2,RGS10,SEC23IP,SFXN4,SLC18A2,TACC2,TIAL1,VAX1,WDR11"
TCGA.AA.3867	10	117339522	117552630	75	-0.4396	NEUTRAL	NA	1	ATRNL1
TCGA.AA.3982	10	117512217	117598177	31	-0.369	NEUTRAL	NA	1	ATRNL1
TCGA.AA.3530	10	117512217	119765850	905	0.1028	NEUTRAL	NA	17	"ATRNL1,C10orf82,CCDC172,EMX2,ENO4,GFRA1,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,RAB11FIP2,SLC18A2,VAX1"
TCGA.AA.3867	10	117567052	135434550	7359	-0.0648	NEUTRAL	NA	112	Too-Many
TCGA.AA.3844	10	117585156	119765850	884	-0.0293	NEUTRAL	NA	17	"ATRNL1,C10orf82,CCDC172,EMX2,ENO4,GFRA1,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,RAB11FIP2,SLC18A2,VAX1"
TCGA.AA.3941	10	117585156	135434550	7336	0.333	NEUTRAL	NA	112	Too-Many
TCGA.AA.3850	10	117587204	118171015	261	0.09035	NEUTRAL	NA	3	"ATRNL1,CCDC172,GFRA1"
TCGA.AA.3982	10	117598732	118035999	212	0.1161	NEUTRAL	NA	2	"ATRNL1,GFRA1"
TCGA.AG.A01W.01A	10	117694110	120786585	150	-0.2663	NEUTRAL	NA	20	"ATRNL1,C10orf82,CACUL1,CCDC172,EMX2,ENO4,FAM204A,GFRA1,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRLHR,RAB11FIP2,SLC18A2,VAX1"
TCGA.AA.3509.01A	10	117704138	119307564	134	-0.0151	NEUTRAL	NA	16	"ATRNL1,C10orf82,CCDC172,EMX2,ENO4,GFRA1,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,SLC18A2,VAX1"
TCGA.AG.3891.01A	10	117704138	120789304	143	-0.1141	NEUTRAL	NA	21	"ATRNL1,C10orf82,CACUL1,CCDC172,EMX2,ENO4,FAM204A,GFRA1,HSPA12A,KCNK18,KIAA1598,NANOS1,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRLHR,RAB11FIP2,SLC18A2,VAX1"
TCGA.AA.3811	10	117708802	119765850	836	-0.0153	NEUTRAL	NA	16	"C10orf82,CCDC172,EMX2,ENO4,GFRA1,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,RAB11FIP2,SLC18A2,VAX1"
TCGA.G4.6299	10	117713220	135434550	7304	-0.0919	NEUTRAL	NA	111	Too-Many
TCGA.AA.A02H.01A	10	117823862	118030287	8	-0.0698	NEUTRAL	NA	1	GFRA1
TCGA.QG.A5YW	10	117826991	135434550	7222	-0.0918	NEUTRAL	NA	111	Too-Many
TCGA.AA.3982	10	118040570	118345725	100	-0.1578	NEUTRAL	NA	3	"CCDC172,PNLIP,PNLIPRP3"
TCGA.AA.3989	10	118056942	119035196	335	0.0928	NEUTRAL	NA	12	"C10orf82,CCDC172,ENO4,HSPA12A,KCNK18,KIAA1598,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,SLC18A2,VAX1"
TCGA.AA.3850	10	118193131	119749508	606	0.20655	NEUTRAL	NA	13	"C10orf82,EMX2,ENO4,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,SLC18A2,VAX1"
TCGA.AA.A02H.01A	10	118196192	135440021	882	-0.134	NEUTRAL	NA	110	Too-Many
TCGA.AZ.4684.01A	10	118202525	127409725	605	-0.2111	NEUTRAL	NA	64	"ACADSB,ARMS2,ATE1,BAG3,BTBD16,BUB3,C10orf120,C10orf82,C10orf88,CACUL1,CHST15,CPXM2,CTBP2,CUZD1,DMBT1,EDRF1,EIF3A,EMX2,ENO4,FAM175B,FAM204A,FAM24A,FAM24B,FAM45A,FAM53B,FGFR2,GPR26,GRK5,HMX2,HMX3,HSPA12A,HTRA1,IKZF5,INPP5F,KCNK18,KIAA1598,LHPP,MCMBP,METTL10,NANOS1,NKX1-2,NSMCE4A,OAT,PDZD8,PLEKHA1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PPAPDC1A,PRDX3,PRLHR,PSTK,RAB11FIP2,RGS10,SEC23IP,SFXN4,SLC18A2,TACC2,TEX36,TIAL1,VAX1,WDR11,ZRANB1"
TCGA.AA.A017.01A	10	118225530	120928642	155	-0.1825	NEUTRAL	NA	22	"C10orf82,CACUL1,EIF3A,EMX2,ENO4,FAM204A,FAM45A,HSPA12A,KCNK18,KIAA1598,NANOS1,PDZD8,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRDX3,PRLHR,RAB11FIP2,SFXN4,SLC18A2,VAX1"
TCGA.AA.3982	10	118347261	119765850	563	0.1708	NEUTRAL	NA	12	"C10orf82,EMX2,ENO4,HSPA12A,KCNK18,KIAA1598,PDZD8,PNLIPRP1,PNLIPRP2,RAB11FIP2,SLC18A2,VAX1"
TCGA.AA.A01Q.01A	10	118357291	118728095	28	0.0086	NEUTRAL	NA	6	"C10orf82,ENO4,HSPA12A,KIAA1598,PNLIPRP1,PNLIPRP2"
TCGA.AA.3930.01A	10	118389413	120840067	123	0.11	NEUTRAL	NA	16	"C10orf82,CACUL1,EIF3A,EMX2,ENO4,FAM204A,HSPA12A,KCNK18,KIAA1598,NANOS1,PDZD8,PNLIPRP2,PRLHR,RAB11FIP2,SLC18A2,VAX1"
TCGA.AA.A00N.01A	10	118425067	119774512	71	0.0491	NEUTRAL	NA	10	"C10orf82,EMX2,ENO4,HSPA12A,KCNK18,KIAA1598,PDZD8,RAB11FIP2,SLC18A2,VAX1"
TCGA.CK.5914.01A	10	118443260	119302742	60	0.0581	NEUTRAL	NA	8	"EMX2,ENO4,HSPA12A,KCNK18,KIAA1598,PDZD8,SLC18A2,VAX1"
TCGA.AG.3909.01A	10	118443260	119305096	49	-0.0577	NEUTRAL	NA	8	"EMX2,ENO4,HSPA12A,KCNK18,KIAA1598,PDZD8,SLC18A2,VAX1"
TCGA.A6.6653	10	118542570	135370866	6923	-0.0872	NEUTRAL	NA	103	Too-Many
TCGA.AA.3680	10	118774194	135434550	6896	-0.0012	NEUTRAL	NA	102	Too-Many
TCGA.AA.A01Q.01A	10	118891675	119133839	24	0.002	NEUTRAL	NA	4	"KCNK18,PDZD8,SLC18A2,VAX1"
TCGA.AG.3906.01A	10	118956952	119029540	13	0.2034	NEUTRAL	NA	2	"KCNK18,SLC18A2"
TCGA.AA.A010.01A	10	118956952	120095018	34	-0.2287	NEUTRAL	NA	6	"EMX2,FAM204A,KCNK18,PDZD8,RAB11FIP2,SLC18A2"
TCGA.A6.3808.01A	10	119026187	127683930	565	-0.49	NEUTRAL	NA	59	"ACADSB,ARMS2,ATE1,BAG3,BCCIP,BTBD16,BUB3,C10orf120,C10orf88,CACUL1,CHST15,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,EDRF1,EIF3A,EMX2,FAM175B,FAM204A,FAM24A,FAM24B,FAM45A,FAM53B,FANK1,FGFR2,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5F,LHPP,MCMBP,METTL10,MMP21,NANOS1,NKX1-2,NSMCE4A,OAT,PDZD8,PLEKHA1,PPAPDC1A,PRDX3,PRLHR,PSTK,RAB11FIP2,RGS10,SEC23IP,SFXN4,SLC18A2,TACC2,TEX36,TIAL1,UROS,WDR11,ZRANB1"
TCGA.AG.3906.01A	10	119036625	120513861	31	-0.1847	NEUTRAL	NA	7	"CACUL1,EMX2,FAM204A,PDZD8,PRLHR,RAB11FIP2,SLC18A2"
TCGA.AA.3989	10	119048751	122421149	1331	-0.227	NEUTRAL	NA	19	"BAG3,CACUL1,EIF3A,EMX2,FAM204A,FAM45A,GRK5,INPP5F,MCMBP,NANOS1,PDZD8,PPAPDC1A,PRDX3,PRLHR,RAB11FIP2,RGS10,SEC23IP,SFXN4,TIAL1"
TCGA.AF.2689	10	119118508	120897631	696	0.2003	NEUTRAL	NA	9	"CACUL1,EIF3A,EMX2,FAM204A,FAM45A,NANOS1,PDZD8,PRLHR,RAB11FIP2"
TCGA.AA.A01Q.01A	10	119302742	120095018	13	-0.5006	NEUTRAL	NA	3	"EMX2,FAM204A,RAB11FIP2"
TCGA.CK.5914.01A	10	119305096	120919155	63	-0.4201	NEUTRAL	NA	9	"CACUL1,EIF3A,EMX2,FAM204A,FAM45A,NANOS1,PRLHR,RAB11FIP2,SFXN4"
TCGA.AA.3982	10	119791027	120304183	185	-0.0896	NEUTRAL	NA	2	"FAM204A,RAB11FIP2"
TCGA.AA.3811	10	119791027	120356378	206	-0.1523	NEUTRAL	NA	3	"FAM204A,PRLHR,RAB11FIP2"
TCGA.AA.3844	10	119791027	122285397	920	-0.0007	NEUTRAL	NA	17	"BAG3,CACUL1,EIF3A,FAM204A,FAM45A,GRK5,INPP5F,MCMBP,NANOS1,PPAPDC1A,PRDX3,PRLHR,RAB11FIP2,RGS10,SEC23IP,SFXN4,TIAL1"
TCGA.AA.3530	10	119791027	125562368	2489	0.0987	NEUTRAL	NA	40	"ACADSB,ARMS2,ATE1,BAG3,BTBD16,BUB3,C10orf120,C10orf88,CACUL1,CPXM2,CUZD1,DMBT1,EIF3A,FAM204A,FAM24A,FAM24B,FAM45A,FGFR2,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5F,MCMBP,NANOS1,NSMCE4A,PLEKHA1,PPAPDC1A,PRDX3,PRLHR,PSTK,RAB11FIP2,RGS10,SEC23IP,SFXN4,TACC2,TIAL1,WDR11"
TCGA.AA.A00N.01A	10	119798436	120513861	19	-0.4847	NEUTRAL	NA	4	"CACUL1,FAM204A,PRLHR,RAB11FIP2"
TCGA.AA.A00F.01A	10	119798436	121591477	113	0.0094	NEUTRAL	NA	15	"BAG3,CACUL1,EIF3A,FAM204A,FAM45A,GRK5,INPP5F,MCMBP,NANOS1,PRDX3,PRLHR,RAB11FIP2,RGS10,SFXN4,TIAL1"
TCGA.AA.3850	10	119900837	120073904	60	0.10885	NEUTRAL	NA	1	FAM204A
TCGA.AA.A01Q.01A	10	120095677	120900694	35	0.0669	NEUTRAL	NA	7	"CACUL1,EIF3A,FAM204A,FAM45A,NANOS1,PRLHR,SFXN4"
TCGA.AA.3850	10	120226872	120350035	53	-0.04675	NEUTRAL	NA	0	None
TCGA.D5.6536	10	120267078	126753503	2691	-0.0088	NEUTRAL	NA	47	"ACADSB,ARMS2,ATE1,BAG3,BTBD16,BUB3,C10orf120,C10orf88,CACUL1,CHST15,CPXM2,CTBP2,CUZD1,DMBT1,EIF3A,FAM175B,FAM24A,FAM24B,FAM45A,FAM53B,FGFR2,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5F,LHPP,MCMBP,METTL10,NANOS1,NKX1-2,NSMCE4A,OAT,PLEKHA1,PPAPDC1A,PRDX3,PRLHR,PSTK,RGS10,SEC23IP,SFXN4,TACC2,TIAL1,WDR11,ZRANB1"
TCGA.AA.3982	10	120306838	120442881	50	0.2528	NEUTRAL	NA	2	"CACUL1,PRLHR"
TCGA.AA.3811	10	120359828	121871131	488	0.2138	NEUTRAL	NA	13	"BAG3,CACUL1,EIF3A,FAM45A,GRK5,INPP5F,MCMBP,NANOS1,PRDX3,RGS10,SEC23IP,SFXN4,TIAL1"
TCGA.A6.6138	10	120429553	135434550	6240	-0.2076	NEUTRAL	NA	93	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BAG3,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CACUL1,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,EIF3A,FAM175B,FAM196A,FAM24A,FAM24B,FAM45A,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5A,INPP5F,JAKMIP3,KNDC1,LHPP,LRRC27,MCMBP,METTL10,MGMT,MKI67,MMP21,MTG1,NANOS1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPAPDC1A,PPP2R2D,PRAP1,PRDX3,PSTK,PTPRE,PWWP2B,RGS10,SEC23IP,SFXN4,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TIAL1,TUBGCP2,UROS,UTF1,VENTX,WDR11,ZNF511,ZRANB1"
TCGA.AA.3982	10	120448202	120523462	16	-0.1268	NEUTRAL	NA	1	CACUL1
TCGA.AA.3509.01A	10	120450763	127409725	479	-0.1648	NEUTRAL	NA	48	"ACADSB,ARMS2,ATE1,BAG3,BTBD16,BUB3,C10orf120,C10orf88,CACUL1,CHST15,CPXM2,CTBP2,CUZD1,DMBT1,EDRF1,EIF3A,FAM175B,FAM24A,FAM24B,FAM45A,FAM53B,FGFR2,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5F,LHPP,MCMBP,METTL10,NANOS1,NKX1-2,NSMCE4A,OAT,PLEKHA1,PPAPDC1A,PRDX3,PSTK,RGS10,SEC23IP,SFXN4,TACC2,TEX36,TIAL1,WDR11,ZRANB1"
TCGA.AA.3982	10	120523605	121565164	337	0.3592	NEUTRAL	NA	10	"BAG3,EIF3A,FAM45A,GRK5,INPP5F,NANOS1,PRDX3,RGS10,SFXN4,TIAL1"
TCGA.AA.3979	10	120709473	122880693	915	0.0009	NEUTRAL	NA	14	"BAG3,EIF3A,FAM45A,GRK5,INPP5F,MCMBP,NANOS1,PPAPDC1A,PRDX3,RGS10,SEC23IP,SFXN4,TIAL1,WDR11"
TCGA.AG.A00C.01A	10	120795502	121189821	51	0.3766	NEUTRAL	NA	5	"EIF3A,FAM45A,GRK5,PRDX3,SFXN4"
TCGA.AG.3906.01A	10	120809316	120833207	15	0.242	NEUTRAL	NA	1	EIF3A
TCGA.AA.A010.01A	10	120820696	120840067	8	-0.3983	NEUTRAL	NA	1	EIF3A
TCGA.AF.2689	10	120898479	120978182	24	-0.2595	NEUTRAL	NA	3	"GRK5,PRDX3,SFXN4"
TCGA.AG.A01W.01A	10	120906134	122651693	128	-0.2831	NEUTRAL	NA	11	"BAG3,GRK5,INPP5F,MCMBP,PPAPDC1A,PRDX3,RGS10,SEC23IP,SFXN4,TIAL1,WDR11"
TCGA.AF.3914.01A	10	120931843	134750941	714	-0.0369	NEUTRAL	NA	72	"ACADSB,ADAM12,ARMS2,ATE1,BAG3,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,GLRX3,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5A,INPP5F,JAKMIP3,LHPP,LRRC27,MCMBP,METTL10,MGMT,MKI67,MMP21,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PLEKHA1,PPAPDC1A,PPP2R2D,PRDX3,PSTK,PTPRE,PWWP2B,RGS10,SEC23IP,STK32C,TACC2,TCERG1L,TEX36,TIAL1,UROS,WDR11,ZRANB1"
TCGA.AA.A017.01A	10	120936485	135440021	706	-0.0903	NEUTRAL	NA	89	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BAG3,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FRG2B,FUOM,GLRX3,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5A,INPP5F,JAKMIP3,KNDC1,LHPP,LRRC27,MCMBP,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPAPDC1A,PPP2R2D,PRAP1,PRDX3,PSTK,PTPRE,PWWP2B,RGS10,SEC23IP,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TIAL1,TUBGCP2,UROS,UTF1,VENTX,WDR11,ZNF511,ZRANB1"
TCGA.AA.A010.01A	10	120938184	121285496	21	0.316	NEUTRAL	NA	3	"GRK5,PRDX3,RGS10"
TCGA.AA.A00N.01A	10	120938184	121541116	41	-0.3103	NEUTRAL	NA	6	"BAG3,GRK5,INPP5F,PRDX3,RGS10,TIAL1"
TCGA.AA.3930.01A	10	120967384	126681217	406	0.0959	NEUTRAL	NA	40	"ACADSB,ARMS2,ATE1,BAG3,BTBD16,BUB3,C10orf120,C10orf88,CHST15,CPXM2,CTBP2,CUZD1,DMBT1,FAM175B,FAM24A,FAM24B,FAM53B,FGFR2,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5F,LHPP,MCMBP,METTL10,NKX1-2,NSMCE4A,OAT,PLEKHA1,PPAPDC1A,PSTK,RGS10,SEC23IP,TACC2,TIAL1,WDR11,ZRANB1"
TCGA.AF.2689	10	120979748	135434550	6055	0.1929	NEUTRAL	NA	87	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BAG3,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5A,INPP5F,JAKMIP3,KNDC1,LHPP,LRRC27,MCMBP,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPAPDC1A,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,RGS10,SEC23IP,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TIAL1,TUBGCP2,UROS,UTF1,VENTX,WDR11,ZNF511,ZRANB1"
TCGA.CA.5254	10	121006226	121215347	81	0.1441	NEUTRAL	NA	1	GRK5
TCGA.QL.A97D	10	121068197	135434550	6027	0.0867	NEUTRAL	NA	87	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BAG3,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5A,INPP5F,JAKMIP3,KNDC1,LHPP,LRRC27,MCMBP,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPAPDC1A,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,RGS10,SEC23IP,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TIAL1,TUBGCP2,UROS,UTF1,VENTX,WDR11,ZNF511,ZRANB1"
TCGA.AG.4009.01A	10	121086005	121274971	18	0.3269	NEUTRAL	NA	2	"GRK5,RGS10"
TCGA.AG.3906.01A	10	121086005	121541116	36	0.0095	NEUTRAL	NA	5	"BAG3,GRK5,INPP5F,RGS10,TIAL1"
TCGA.AA.3862.01A	10	121086005	125804116	354	-0.2301	NEUTRAL	NA	32	"ACADSB,ARMS2,ATE1,BAG3,BTBD16,BUB3,C10orf120,C10orf88,CHST15,CPXM2,CUZD1,DMBT1,FAM24A,FAM24B,FGFR2,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5F,MCMBP,NSMCE4A,PLEKHA1,PPAPDC1A,PSTK,RGS10,SEC23IP,TACC2,TIAL1,WDR11"
TCGA.A6.6650	10	121118050	135434550	5603	-0.0495	NEUTRAL	NA	87	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BAG3,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5A,INPP5F,JAKMIP3,KNDC1,LHPP,LRRC27,MCMBP,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPAPDC1A,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,RGS10,SEC23IP,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TIAL1,TUBGCP2,UROS,UTF1,VENTX,WDR11,ZNF511,ZRANB1"
TCGA.AG.3891.01A	10	121182661	131665999	589	-0.0337	NEUTRAL	NA	58	"ACADSB,ADAM12,ARMS2,ATE1,BAG3,BCCIP,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,DOCK1,EBF3,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,GPR26,GRK5,HMX2,HMX3,HTRA1,IKZF5,INPP5F,LHPP,MCMBP,METTL10,MGMT,MKI67,MMP21,NKX1-2,NPS,NSMCE4A,OAT,PLEKHA1,PPAPDC1A,PSTK,PTPRE,RGS10,SEC23IP,TACC2,TEX36,TIAL1,UROS,WDR11,ZRANB1"
TCGA.AG.A00C.01A	10	121190891	121212610	8	-0.2874	NEUTRAL	NA	1	GRK5
TCGA.CK.5914.01A	10	121190891	121435954	30	-0.3229	NEUTRAL	NA	4	"BAG3,GRK5,RGS10,TIAL1"
TCGA.AG.A00C.01A	10	121214444	121600308	45	0.3444	NEUTRAL	NA	6	"BAG3,GRK5,INPP5F,MCMBP,RGS10,TIAL1"
TCGA.CA.5254	10	121217060	123604354	1119	-0.1691	NEUTRAL	NA	10	"ATE1,BAG3,FGFR2,INPP5F,MCMBP,PPAPDC1A,RGS10,SEC23IP,TIAL1,WDR11"
TCGA.AG.4009.01A	10	121285496	121510542	17	-0.2196	NEUTRAL	NA	4	"BAG3,INPP5F,RGS10,TIAL1"
TCGA.AA.A01Q.01A	10	121335126	121541116	17	0.0877	NEUTRAL	NA	3	"BAG3,INPP5F,TIAL1"
TCGA.AA.A010.01A	10	121341923	121510542	9	-3.00E-04	NEUTRAL	NA	3	"BAG3,INPP5F,TIAL1"
TCGA.AA.A01Q.01A	10	121551027	121590935	18	-0.2608	NEUTRAL	NA	2	"INPP5F,MCMBP"
TCGA.AG.A01L.01A	10	121567394	124091913	158	-0.0507	NEUTRAL	NA	10	"ATE1,BTBD16,FGFR2,INPP5F,MCMBP,NSMCE4A,PPAPDC1A,SEC23IP,TACC2,WDR11"
TCGA.AG.3906.01A	10	121571222	122348765	47	-0.0301	NEUTRAL	NA	4	"INPP5F,MCMBP,PPAPDC1A,SEC23IP"
TCGA.AA.3982	10	121571506	122285397	330	0.015	NEUTRAL	NA	4	"INPP5F,MCMBP,PPAPDC1A,SEC23IP"
TCGA.AA.A010.01A	10	121578927	121586105	6	-0.3536	NEUTRAL	NA	1	INPP5F
TCGA.AG.4009.01A	10	121578927	121663564	25	-0.4193	NEUTRAL	NA	3	"INPP5F,MCMBP,SEC23IP"
TCGA.AG.3909.01A	10	121590935	121619262	14	-0.5082	NEUTRAL	NA	1	MCMBP
TCGA.CK.5914.01A	10	121591477	122610877	42	0.2085	NEUTRAL	NA	4	"MCMBP,PPAPDC1A,SEC23IP,WDR11"
TCGA.AA.A01Q.01A	10	121591477	129847767	402	-0.0163	NEUTRAL	NA	50	"ACADSB,ADAM12,ARMS2,ATE1,BCCIP,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,DOCK1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,GPR26,HMX2,HMX3,HTRA1,IKZF5,LHPP,MCMBP,METTL10,MMP21,NKX1-2,NPS,NSMCE4A,OAT,PLEKHA1,PPAPDC1A,PSTK,PTPRE,SEC23IP,TACC2,TEX36,UROS,WDR11,ZRANB1"
TCGA.AA.A00F.01A	10	121595000	123659333	85	-0.2919	NEUTRAL	NA	6	"ATE1,FGFR2,MCMBP,PPAPDC1A,SEC23IP,WDR11"
TCGA.AG.A00C.01A	10	121601946	123670383	92	-0.0856	NEUTRAL	NA	6	"ATE1,FGFR2,MCMBP,PPAPDC1A,SEC23IP,WDR11"
TCGA.AA.A010.01A	10	121631991	121689068	15	-0.1964	NEUTRAL	NA	2	"MCMBP,SEC23IP"
TCGA.AG.3909.01A	10	121652267	121678944	11	-0.0142	NEUTRAL	NA	1	SEC23IP
TCGA.AG.4009.01A	10	121668496	122668030	50	-0.1059	NEUTRAL	NA	3	"PPAPDC1A,SEC23IP,WDR11"
TCGA.AG.3909.01A	10	121680350	122358749	16	0.3331	NEUTRAL	NA	2	"PPAPDC1A,SEC23IP"
TCGA.AA.3850	10	121748670	123118217	765	0.01865	NEUTRAL	NA	2	"PPAPDC1A,WDR11"
TCGA.AA.3811	10	121871696	123669254	941	-0.0997	NEUTRAL	NA	4	"ATE1,FGFR2,PPAPDC1A,WDR11"
TCGA.EI.6508	10	121898993	135434550	5748	-0.0509	NEUTRAL	NA	80	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPAPDC1A,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,WDR11,ZNF511,ZRANB1"
TCGA.AA.3982	10	122295035	122416808	77	0.0505	NEUTRAL	NA	1	PPAPDC1A
TCGA.AA.3844	10	122295035	122919308	344	-0.0921	NEUTRAL	NA	2	"PPAPDC1A,WDR11"
TCGA.AA.3989	10	122421397	122880693	238	0.0811	NEUTRAL	NA	1	WDR11
TCGA.AA.3982	10	122428413	122872264	225	0.164	NEUTRAL	NA	1	WDR11
TCGA.AG.3909.01A	10	122611987	122668030	28	-0.2076	NEUTRAL	NA	1	WDR11
TCGA.AA.A00N.01A	10	122611987	123661901	56	0.1891	NEUTRAL	NA	3	"ATE1,FGFR2,WDR11"
TCGA.AG.3906.01A	10	122637818	131675983	487	-0.0501	NEUTRAL	NA	50	"ACADSB,ADAM12,ARMS2,ATE1,BCCIP,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,DOCK1,EBF3,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,GPR26,HMX2,HMX3,HTRA1,IKZF5,LHPP,METTL10,MGMT,MKI67,MMP21,NKX1-2,NPS,NSMCE4A,OAT,PLEKHA1,PSTK,PTPRE,TACC2,TEX36,UROS,WDR11,ZRANB1"
TCGA.CK.5914.01A	10	122640276	123600565	41	0.2748	NEUTRAL	NA	3	"ATE1,FGFR2,WDR11"
TCGA.AA.A010.01A	10	122645285	123241636	18	-0.1699	NEUTRAL	NA	2	"FGFR2,WDR11"
TCGA.AG.A01W.01A	10	122652521	133680410	552	0.256	NEUTRAL	NA	52	"ACADSB,ADAM12,ARMS2,ATE1,BCCIP,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,DOCK1,EBF3,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,LHPP,METTL10,MGMT,MKI67,MMP21,NKX1-2,NPS,NSMCE4A,OAT,PLEKHA1,PSTK,PTPRE,TACC2,TCERG1L,TEX36,UROS,WDR11,ZRANB1"
TCGA.AA.3982	10	122874347	122944425	58	-0.3241	NEUTRAL	NA	0	None
TCGA.AG.4021	10	122887046	135434550	5213	-0.0514	NEUTRAL	NA	78	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.CL.4957	10	122887046	135434550	5224	-0.0549	NEUTRAL	NA	78	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AA.3979	10	122888554	125527324	1215	-0.0292	NEUTRAL	NA	22	"ACADSB,ARMS2,ATE1,BTBD16,BUB3,C10orf120,C10orf88,CPXM2,CUZD1,DMBT1,FAM24A,FAM24B,FGFR2,GPR26,HMX2,HMX3,HTRA1,IKZF5,NSMCE4A,PLEKHA1,PSTK,TACC2"
TCGA.AA.3875	10	122888554	135434550	5223	-0.0192	NEUTRAL	NA	78	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AA.3989	10	122888554	135434550	5212	-0.1532	NEUTRAL	NA	78	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AA.3844	10	122927733	125562368	1219	0.0462	NEUTRAL	NA	22	"ACADSB,ARMS2,ATE1,BTBD16,BUB3,C10orf120,C10orf88,CPXM2,CUZD1,DMBT1,FAM24A,FAM24B,FGFR2,GPR26,HMX2,HMX3,HTRA1,IKZF5,NSMCE4A,PLEKHA1,PSTK,TACC2"
TCGA.AA.3982	10	122948221	123523759	297	0.2042	NEUTRAL	NA	2	"ATE1,FGFR2"
TCGA.AA.3850	10	123119044	135434550	5063	0.29425	NEUTRAL	NA	78	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AG.4009.01A	10	123239048	123661901	28	0.148	NEUTRAL	NA	2	"ATE1,FGFR2"
TCGA.AA.A00D.01A	10	123244881	123324975	14	-0.445	NEUTRAL	NA	1	FGFR2
TCGA.AA.A010.01A	10	123297816	123687818	19	-0.3636	NEUTRAL	NA	2	"ATE1,FGFR2"
TCGA.AG.3909.01A	10	123353184	123661901	9	-0.1914	NEUTRAL	NA	2	"ATE1,FGFR2"
TCGA.AA.A00D.01A	10	123353184	135373539	549	0.1244	NEUTRAL	NA	78	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AA.3982	10	123523809	123556425	19	-0.1666	NEUTRAL	NA	1	ATE1
TCGA.AA.3982	10	123562743	124062452	232	0.3437	NEUTRAL	NA	4	"ATE1,BTBD16,NSMCE4A,TACC2"
TCGA.CA.5254	10	123614574	124872513	493	0.2113	NEUTRAL	NA	16	"ACADSB,ARMS2,ATE1,BTBD16,C10orf120,C10orf88,CUZD1,DMBT1,FAM24A,FAM24B,HTRA1,IKZF5,NSMCE4A,PLEKHA1,PSTK,TACC2"
TCGA.G4.6626	10	123624304	123839069	82	0.3198	NEUTRAL	NA	3	"ATE1,NSMCE4A,TACC2"
TCGA.AA.A00F.01A	10	123661901	123733471	14	0.1473	NEUTRAL	NA	2	"ATE1,NSMCE4A"
TCGA.AA.3811	10	123673205	124062452	198	0.2666	NEUTRAL	NA	4	"ATE1,BTBD16,NSMCE4A,TACC2"
TCGA.A6.3810.01A	10	123719808	123730407	6	-0.4298	NEUTRAL	NA	1	NSMCE4A
TCGA.AG.3909.01A	10	123733471	123892076	11	0.3219	NEUTRAL	NA	2	"NSMCE4A,TACC2"
TCGA.A6.3810.01A	10	123733471	132944727	482	-0.0378	NEUTRAL	NA	49	"ACADSB,ADAM12,ARMS2,BCCIP,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,DOCK1,EBF3,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FOXI2,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,LHPP,METTL10,MGMT,MKI67,MMP21,NKX1-2,NPS,NSMCE4A,OAT,PLEKHA1,PSTK,PTPRE,TACC2,TCERG1L,TEX36,UROS,ZRANB1"
TCGA.CK.5914.01A	10	123734342	124189113	57	0.3189	NEUTRAL	NA	4	"BTBD16,NSMCE4A,PLEKHA1,TACC2"
TCGA.AA.A00F.01A	10	123734342	135373539	533	-0.0921	NEUTRAL	NA	76	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AG.4009.01A	10	123781417	123903037	11	0.0824	NEUTRAL	NA	1	TACC2
TCGA.AG.A00C.01A	10	123781417	124740002	130	-0.0719	NEUTRAL	NA	12	"ARMS2,BTBD16,C10orf120,C10orf88,CUZD1,DMBT1,FAM24A,FAM24B,HTRA1,PLEKHA1,PSTK,TACC2"
TCGA.G4.6626	10	123842522	135434550	4768	-0.4672	NEUTRAL	NA	75	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AA.A010.01A	10	123847956	123988810	13	0.1449	NEUTRAL	NA	1	TACC2
TCGA.AG.4009.01A	10	123984224	123997416	7	-0.0142	NEUTRAL	NA	1	TACC2
TCGA.AG.3909.01A	10	123985834	124325420	48	0.121	NEUTRAL	NA	6	"ARMS2,BTBD16,DMBT1,HTRA1,PLEKHA1,TACC2"
TCGA.AG.4009.01A	10	124001398	124094349	18	0.2282	NEUTRAL	NA	2	"BTBD16,TACC2"
TCGA.AA.3982	10	124065659	124071344	8	0.0735	NEUTRAL	NA	1	BTBD16
TCGA.AA.3811	10	124065659	135434550	4621	0.0264	NEUTRAL	NA	74	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AA.3982	10	124089035	125296371	491	0.1494	NEUTRAL	NA	16	"ACADSB,ARMS2,BTBD16,BUB3,C10orf120,C10orf88,CUZD1,DMBT1,FAM24A,FAM24B,HMX2,HMX3,HTRA1,IKZF5,PLEKHA1,PSTK"
TCGA.AG.4009.01A	10	124095962	124248910	16	-0.3615	NEUTRAL	NA	4	"ARMS2,BTBD16,HTRA1,PLEKHA1"
TCGA.AA.3877	10	124109919	124891136	270	-0.5126	NEUTRAL	NA	12	"ACADSB,ARMS2,C10orf120,C10orf88,CUZD1,DMBT1,FAM24A,FAM24B,HTRA1,IKZF5,PLEKHA1,PSTK"
TCGA.F4.6704	10	124138585	135434550	4601	0.0242	NEUTRAL	NA	73	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,BCCIP,BNIP3,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AG.A01L.01A	10	124152666	134628048	459	-0.1343	NEUTRAL	NA	57	"ACADSB,ADAM12,ARMS2,BCCIP,BNIP3,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FOXI2,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,NKX1-2,NKX6-2,NPS,OAT,PLEKHA1,PPP2R2D,PSTK,PTPRE,PWWP2B,STK32C,TCERG1L,TEX36,UROS,ZRANB1"
TCGA.AG.4009.01A	10	124266175	124457227	51	0.3157	NEUTRAL	NA	3	"C10orf120,DMBT1,HTRA1"
TCGA.AA.A02K.01A	10	124357411	135083349	571	-0.1119	NEUTRAL	NA	59	"ACADSB,ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FOXI2,GLRX3,GPR26,HMX2,HMX3,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,NKX1-2,NKX6-2,NPS,OAT,PPP2R2D,PSTK,PTPRE,PWWP2B,STK32C,TCERG1L,TEX36,UROS,UTF1,VENTX,ZRANB1"
TCGA.DM.A28M.01A	10	124376679	127418808	167	-0.1547	NEUTRAL	NA	25	"ACADSB,BUB3,C10orf120,C10orf88,CHST15,CPXM2,CTBP2,CUZD1,DMBT1,EDRF1,FAM175B,FAM24A,FAM24B,FAM53B,GPR26,HMX2,HMX3,IKZF5,LHPP,METTL10,NKX1-2,OAT,PSTK,TEX36,ZRANB1"
TCGA.CK.5914.01A	10	124384706	124396652	10	0.0873	NEUTRAL	NA	1	DMBT1
TCGA.AG.3909.01A	10	124384706	124402608	12	0.3258	NEUTRAL	NA	1	DMBT1
TCGA.CK.5914.01A	10	124399518	124740002	26	-0.314	NEUTRAL	NA	7	"C10orf120,C10orf88,CUZD1,DMBT1,FAM24A,FAM24B,PSTK"
TCGA.AG.3909.01A	10	124457227	124697201	19	-0.3387	NEUTRAL	NA	5	"C10orf120,C10orf88,CUZD1,FAM24A,FAM24B"
TCGA.AG.4009.01A	10	124457888	124740002	22	-0.1071	NEUTRAL	NA	6	"C10orf120,C10orf88,CUZD1,FAM24A,FAM24B,PSTK"
TCGA.AA.A00N.01A	10	124591743	124740002	20	-0.2239	NEUTRAL	NA	5	"C10orf88,CUZD1,FAM24A,FAM24B,PSTK"
TCGA.AA.A010.01A	10	124595667	124914397	43	-0.1943	NEUTRAL	NA	10	"ACADSB,BUB3,C10orf88,CUZD1,FAM24A,FAM24B,HMX2,HMX3,IKZF5,PSTK"
TCGA.AA.A00N.01A	10	124768485	124914397	16	-0.2389	NEUTRAL	NA	4	"ACADSB,BUB3,HMX2,HMX3"
TCGA.CK.5914.01A	10	124768485	126507917	79	-0.3061	NEUTRAL	NA	13	"ACADSB,BUB3,CHST15,CPXM2,FAM175B,FAM53B,GPR26,HMX2,HMX3,LHPP,METTL10,NKX1-2,OAT"
TCGA.AG.4009.01A	10	124793845	124896557	11	0.0047	NEUTRAL	NA	2	"ACADSB,HMX3"
TCGA.AG.3909.01A	10	124793845	124909045	13	-0.0873	NEUTRAL	NA	3	"ACADSB,HMX2,HMX3"
TCGA.AG.A00C.01A	10	124799935	124914397	12	-0.1982	NEUTRAL	NA	4	"ACADSB,BUB3,HMX2,HMX3"
TCGA.AA.3877	10	124894168	126750944	739	-0.0152	NEUTRAL	NA	14	"BUB3,CHST15,CPXM2,CTBP2,FAM175B,FAM53B,GPR26,HMX2,HMX3,LHPP,METTL10,NKX1-2,OAT,ZRANB1"
TCGA.AG.A00C.01A	10	124915112	124923312	6	0.3573	NEUTRAL	NA	1	BUB3
TCGA.AG.A00C.01A	10	124924497	125805151	24	-0.1936	NEUTRAL	NA	4	"BUB3,CHST15,CPXM2,GPR26"
TCGA.CA.5254	10	125009226	125940465	402	0.1946	NEUTRAL	NA	3	"CHST15,CPXM2,GPR26"
TCGA.AA.3982	10	125308281	125562368	150	0.22	NEUTRAL	NA	2	"CPXM2,GPR26"
TCGA.AG.3909.01A	10	125425907	125622079	15	0.3066	NEUTRAL	NA	2	"CPXM2,GPR26"
TCGA.AG.4009.01A	10	125506240	127437952	90	-0.0047	NEUTRAL	NA	12	"CHST15,CPXM2,CTBP2,EDRF1,FAM175B,FAM53B,LHPP,METTL10,NKX1-2,OAT,TEX36,ZRANB1"
TCGA.AA.3982	10	125564899	125580833	6	-0.4161	NEUTRAL	NA	1	CPXM2
TCGA.AA.3530	10	125575349	133927086	3635	0.1447	NEUTRAL	NA	33	"ADAM12,BCCIP,BNIP3,C10orf90,CHST15,CLRN3,CPXM2,CTBP2,DHX32,DOCK1,EBF3,EDRF1,FAM175B,FAM196A,FAM53B,FANK1,FOXI2,GLRX3,JAKMIP3,LHPP,METTL10,MGMT,MKI67,MMP21,NKX1-2,NPS,OAT,PPP2R2D,PTPRE,TCERG1L,TEX36,UROS,ZRANB1"
TCGA.AA.3844	10	125590185	126144964	155	0.125	NEUTRAL	NA	4	"CHST15,CPXM2,NKX1-2,OAT"
TCGA.AA.3982	10	125590185	128043535	903	0.2466	NEUTRAL	NA	18	"ADAM12,BCCIP,CHST15,CPXM2,CTBP2,DHX32,EDRF1,FAM175B,FAM53B,FANK1,LHPP,METTL10,MMP21,NKX1-2,OAT,TEX36,UROS,ZRANB1"
TCGA.AG.A008.01A	10	125797992	126519871	35	0.0355	NEUTRAL	NA	7	"CHST15,FAM175B,FAM53B,LHPP,METTL10,NKX1-2,OAT"
TCGA.AA.3862.01A	10	125805151	127436058	78	0.2143	NEUTRAL	NA	11	"CHST15,CTBP2,EDRF1,FAM175B,FAM53B,LHPP,METTL10,NKX1-2,OAT,TEX36,ZRANB1"
TCGA.AA.3979	10	125825376	135434550	3905	-0.08	NEUTRAL	NA	56	"ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CTBP2,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM53B,FANK1,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,OAT,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.CA.5254	10	125942585	126575848	219	-0.2076	NEUTRAL	NA	6	"FAM175B,FAM53B,LHPP,METTL10,NKX1-2,OAT"
TCGA.AM.5820	10	126026817	126205536	70	0.1749	NEUTRAL	NA	3	"LHPP,NKX1-2,OAT"
TCGA.AA.A010.01A	10	126172671	126395165	11	0.3068	NEUTRAL	NA	2	"FAM53B,LHPP"
TCGA.AG.A00C.01A	10	126172671	126681217	35	0.051	NEUTRAL	NA	6	"CTBP2,FAM175B,FAM53B,LHPP,METTL10,ZRANB1"
TCGA.AG.3909.01A	10	126355887	127477400	69	-0.2911	NEUTRAL	NA	9	"CTBP2,EDRF1,FAM175B,FAM53B,METTL10,MMP21,TEX36,UROS,ZRANB1"
TCGA.AM.5820	10	126394992	126427036	19	0.1885	NEUTRAL	NA	1	FAM53B
TCGA.AA.3844	10	126399565	133637384	3285	0.0295	NEUTRAL	NA	25	"ADAM12,BCCIP,C10orf90,CLRN3,CTBP2,DHX32,DOCK1,EBF3,EDRF1,FAM175B,FAM196A,FAM53B,FANK1,FOXI2,GLRX3,METTL10,MGMT,MKI67,MMP21,NPS,PTPRE,TCERG1L,TEX36,UROS,ZRANB1"
TCGA.AA.3556	10	126438962	126580527	16	0.3608	NEUTRAL	NA	2	"FAM175B,METTL10"
TCGA.AM.5820	10	126438962	126675364	38	-0.2859	NEUTRAL	NA	3	"FAM175B,METTL10,ZRANB1"
TCGA.AA.A010.01A	10	126477565	127426813	48	0.1085	NEUTRAL	NA	6	"CTBP2,EDRF1,FAM175B,METTL10,TEX36,ZRANB1"
TCGA.CK.5914.01A	10	126515132	127408330	30	0.2573	NEUTRAL	NA	5	"CTBP2,EDRF1,FAM175B,TEX36,ZRANB1"
TCGA.AA.3815.01A	10	126519871	135440021	486	-0.1125	NEUTRAL	NA	51	"ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CLRN3,CTBP2,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FANK1,FOXI2,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MMP21,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AA.A00N.01A	10	126523034	127408330	26	0.1605	NEUTRAL	NA	5	"CTBP2,EDRF1,FAM175B,TEX36,ZRANB1"
TCGA.AG.A008.01A	10	126523034	133747917	240	-0.1994	NEUTRAL	NA	23	"ADAM12,BCCIP,C10orf90,CLRN3,CTBP2,DHX32,DOCK1,EBF3,EDRF1,FAM175B,FAM196A,FANK1,FOXI2,GLRX3,MGMT,MKI67,MMP21,NPS,PTPRE,TCERG1L,TEX36,UROS,ZRANB1"
TCGA.CA.5254	10	126578767	127590348	338	0.2323	NEUTRAL	NA	9	"BCCIP,CTBP2,DHX32,EDRF1,FANK1,MMP21,TEX36,UROS,ZRANB1"
TCGA.AA.3556	10	126581890	127783319	428	-0.0043	NEUTRAL	NA	10	"ADAM12,BCCIP,CTBP2,DHX32,EDRF1,FANK1,MMP21,TEX36,UROS,ZRANB1"
TCGA.AA.3986	10	126583347	135434550	3666	0.0095	NEUTRAL	NA	49	"ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CLRN3,CTBP2,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM196A,FANK1,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MMP21,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AM.5820	10	126678920	133942628	3328	0.1669	NEUTRAL	NA	24	"ADAM12,BCCIP,BNIP3,C10orf90,CLRN3,CTBP2,DHX32,DOCK1,EBF3,EDRF1,FAM196A,FANK1,FOXI2,GLRX3,JAKMIP3,MGMT,MKI67,MMP21,NPS,PPP2R2D,PTPRE,TCERG1L,TEX36,UROS"
TCGA.AG.A00C.01A	10	126681731	126727498	9	-0.4611	NEUTRAL	NA	1	CTBP2
TCGA.AA.3930.01A	10	126714602	133948513	249	0.0589	NEUTRAL	NA	24	"ADAM12,BCCIP,BNIP3,C10orf90,CLRN3,CTBP2,DHX32,DOCK1,EBF3,EDRF1,FAM196A,FANK1,FOXI2,GLRX3,JAKMIP3,MGMT,MKI67,MMP21,NPS,PPP2R2D,PTPRE,TCERG1L,TEX36,UROS"
TCGA.AA.3524	10	126723132	127930819	490	0.0857	NEUTRAL	NA	9	"ADAM12,BCCIP,CTBP2,DHX32,EDRF1,FANK1,MMP21,TEX36,UROS"
TCGA.AA.3877	10	126844846	135434550	3557	-0.0384	NEUTRAL	NA	48	"ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CLRN3,CTBP2,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM196A,FANK1,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MMP21,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511"
TCGA.AG.A00C.01A	10	127408330	127491490	33	0.0711	NEUTRAL	NA	3	"EDRF1,MMP21,UROS"
TCGA.AA.A00N.01A	10	127421951	127436058	10	-0.2742	NEUTRAL	NA	1	EDRF1
TCGA.CK.5914.01A	10	127426456	127442216	10	0.3117	NEUTRAL	NA	1	EDRF1
TCGA.DM.A28M.01A	10	127426456	135440021	506	-0.1876	NEUTRAL	NA	47	"ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM196A,FANK1,FOXI2,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MMP21,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UROS,UTF1,VENTX,ZNF511"
TCGA.AZ.4684.01A	10	127428985	135440021	506	-0.2996	NEUTRAL	NA	47	"ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM196A,FANK1,FOXI2,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MMP21,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UROS,UTF1,VENTX,ZNF511"
TCGA.AA.3509.01A	10	127429530	135440021	505	-0.2171	NEUTRAL	NA	47	"ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM196A,FANK1,FOXI2,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MMP21,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UROS,UTF1,VENTX,ZNF511"
TCGA.AA.3862.01A	10	127437952	135440021	446	-0.4444	NEUTRAL	NA	47	"ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM196A,FANK1,FOXI2,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MMP21,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UROS,UTF1,VENTX,ZNF511"
TCGA.AA.A00N.01A	10	127461141	127491490	8	-0.1847	NEUTRAL	NA	2	"MMP21,UROS"
TCGA.AG.4009.01A	10	127484615	127685920	31	-0.206	NEUTRAL	NA	4	"BCCIP,DHX32,FANK1,UROS"
TCGA.AG.3909.01A	10	127524634	127569071	13	-0.4171	NEUTRAL	NA	2	"BCCIP,DHX32"
TCGA.AA.A00N.01A	10	127524634	127685920	20	-0.3865	NEUTRAL	NA	3	"BCCIP,DHX32,FANK1"
TCGA.AG.A00C.01A	10	127530285	129881033	123	-0.1059	NEUTRAL	NA	11	"ADAM12,BCCIP,C10orf90,CLRN3,DHX32,DOCK1,FAM196A,FANK1,FOXI2,NPS,PTPRE"
TCGA.AA.A024.01A	10	127542523	133930561	178	-0.0082	NEUTRAL	NA	18	"ADAM12,BNIP3,C10orf90,CLRN3,DHX32,DOCK1,EBF3,FAM196A,FANK1,FOXI2,GLRX3,JAKMIP3,MGMT,MKI67,NPS,PPP2R2D,PTPRE,TCERG1L"
TCGA.CA.5254	10	127596104	127964148	228	-0.1775	NEUTRAL	NA	2	"ADAM12,FANK1"
TCGA.A6.3808.01A	10	127685058	133058474	167	0.0202	NEUTRAL	NA	14	"ADAM12,C10orf90,CLRN3,DOCK1,EBF3,FAM196A,FANK1,FOXI2,GLRX3,MGMT,MKI67,NPS,PTPRE,TCERG1L"
TCGA.AG.3909.01A	10	127693404	127705790	4	-0.2565	NEUTRAL	NA	2	"ADAM12,FANK1"
TCGA.CK.5914.01A	10	127693404	128785744	38	0.2306	NEUTRAL	NA	4	"ADAM12,C10orf90,DOCK1,FANK1"
TCGA.AG.4009.01A	10	127693404	129877785	110	0.108	NEUTRAL	NA	9	"ADAM12,C10orf90,CLRN3,DOCK1,FAM196A,FANK1,FOXI2,NPS,PTPRE"
TCGA.AG.3909.01A	10	127708217	128768909	31	0.2025	NEUTRAL	NA	3	"ADAM12,C10orf90,DOCK1"
TCGA.CA.5254	10	127964652	128774871	316	0.2462	NEUTRAL	NA	3	"ADAM12,C10orf90,DOCK1"
TCGA.AA.3982	10	128052378	128068775	13	-0.5042	NEUTRAL	NA	1	ADAM12
TCGA.AA.3982	10	128079594	133379194	2542	0.197	NEUTRAL	NA	12	"C10orf90,CLRN3,DOCK1,EBF3,FAM196A,FOXI2,GLRX3,MGMT,MKI67,NPS,PTPRE,TCERG1L"
TCGA.AA.3524	10	128144154	130448819	1047	0.0963	NEUTRAL	NA	8	"C10orf90,CLRN3,DOCK1,FAM196A,FOXI2,MKI67,NPS,PTPRE"
TCGA.AF.3913	10	128157084	135434550	3015	-0.1159	NEUTRAL	NA	39	"ADAM8,ADGRA1,BNIP3,C10orf90,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FAM196A,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A00N.01A	10	128202382	128785744	7	-0.2316	NEUTRAL	NA	2	"C10orf90,DOCK1"
TCGA.AA.3556	10	128341157	135434550	2900	-0.0478	NEUTRAL	NA	38	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FAM196A,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.D5.6536	10	128472458	135434550	2872	-0.0473	NEUTRAL	NA	38	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FAM196A,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.A023.01A	10	128768909	135440021	244	-0.4635	NEUTRAL	NA	39	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FAM196A,FOXI2,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.3909.01A	10	128776131	128785744	3	-0.3615	NEUTRAL	NA	1	DOCK1
TCGA.CA.5254	10	128777652	130867231	1025	-0.1732	NEUTRAL	NA	7	"CLRN3,DOCK1,FAM196A,FOXI2,MKI67,NPS,PTPRE"
TCGA.AA.A02E.01A	10	128780158	135097345	191	-0.5008	NEUTRAL	NA	28	"ADAM8,ADGRA1,BNIP3,C10orf91,CFAP46,CLRN3,DOCK1,DPYSL4,EBF3,FAM196A,FOXI2,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,NKX6-2,NPS,PPP2R2D,PTPRE,PWWP2B,STK32C,TCERG1L,TUBGCP2,UTF1,VENTX"
TCGA.AA.A01K.01A	10	128785744	135440021	229	-0.4804	NEUTRAL	NA	39	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FAM196A,FOXI2,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A00N.01A	10	128810501	129900874	71	0.0212	NEUTRAL	NA	7	"CLRN3,DOCK1,FAM196A,FOXI2,MKI67,NPS,PTPRE"
TCGA.AG.3909.01A	10	128816934	129900874	70	-0.2463	NEUTRAL	NA	7	"CLRN3,DOCK1,FAM196A,FOXI2,MKI67,NPS,PTPRE"
TCGA.CK.5914.01A	10	128829932	129847767	48	-0.2315	NEUTRAL	NA	6	"CLRN3,DOCK1,FAM196A,FOXI2,NPS,PTPRE"
TCGA.AA.3975	10	128871300	135434550	2712	-0.0537	NEUTRAL	NA	38	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FAM196A,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.D5.6535	10	129182768	135434550	2600	-0.0532	NEUTRAL	NA	37	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.4N.A93T	10	129189473	129229918	23	-0.4302	NEUTRAL	NA	1	DOCK1
TCGA.4N.A93T	10	129232253	135434550	2567	-0.1118	NEUTRAL	NA	37	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.EI.7004	10	129674475	135434550	2326	0.0988	NEUTRAL	NA	34	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DPYSL4,EBF3,ECHS1,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A01Q.01A	10	129866340	131671677	35	-0.2917	NEUTRAL	NA	4	"EBF3,MGMT,MKI67,PTPRE"
TCGA.AA.A010.01A	10	129881033	131265420	14	-0.4162	NEUTRAL	NA	2	"MKI67,PTPRE"
TCGA.AG.4009.01A	10	129881033	134188533	90	-0.2609	NEUTRAL	NA	12	"BNIP3,DPYSL4,EBF3,GLRX3,JAKMIP3,LRRC27,MGMT,MKI67,PPP2R2D,PTPRE,STK32C,TCERG1L"
TCGA.AG.A00C.01A	10	129897408	135440021	194	0.2692	NEUTRAL	NA	33	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,EBF3,ECHS1,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.F4.6461	10	129994578	135434550	2199	-0.0612	NEUTRAL	NA	31	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,EBF3,ECHS1,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.CA.5254	10	130872866	131455234	256	0.1918	NEUTRAL	NA	1	MGMT
TCGA.AA.3524	10	131308571	132380109	476	0.2351	NEUTRAL	NA	3	"EBF3,GLRX3,MGMT"
TCGA.AA.A010.01A	10	131334495	131675983	15	0.2356	NEUTRAL	NA	2	"EBF3,MGMT"
TCGA.CA.5254	10	131455327	131577366	66	-0.2478	NEUTRAL	NA	1	MGMT
TCGA.AY.6196	10	131471967	135434550	1477	0.1652	NEUTRAL	NA	31	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,EBF3,ECHS1,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AF.2692	10	131510292	133649264	1066	-0.2411	NEUTRAL	NA	4	"EBF3,GLRX3,MGMT,TCERG1L"
TCGA.CA.5254	10	131577448	134089749	1162	0.2064	NEUTRAL	NA	8	"BNIP3,DPYSL4,EBF3,GLRX3,JAKMIP3,PPP2R2D,STK32C,TCERG1L"
TCGA.AG.3891.01A	10	131761602	133761027	25	0.097	NEUTRAL	NA	4	"EBF3,GLRX3,PPP2R2D,TCERG1L"
TCGA.AA.A01Q.01A	10	131761602	133961417	33	-0.3526	NEUTRAL	NA	6	"BNIP3,EBF3,GLRX3,JAKMIP3,PPP2R2D,TCERG1L"
TCGA.AG.3906.01A	10	131943474	134219328	64	-0.0729	NEUTRAL	NA	9	"BNIP3,DPYSL4,GLRX3,JAKMIP3,LRRC27,PPP2R2D,PWWP2B,STK32C,TCERG1L"
TCGA.D5.6924	10	132012190	135434550	1264	-0.2258	NEUTRAL	NA	28	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.3662	10	132031663	135434550	1260	-0.1362	NEUTRAL	NA	28	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.CK.6747	10	132043616	135434550	1256	-0.078	NEUTRAL	NA	28	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.3901	10	132218716	135434550	1155	-0.0213	NEUTRAL	NA	28	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.EF.5830	10	132342751	135304642	1028	0.0887	NEUTRAL	NA	26	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.EI.6513	10	132538194	135434550	1005	-0.1081	NEUTRAL	NA	28	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AD.6890	10	132905424	135434550	752	-0.0693	NEUTRAL	NA	28	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.A6.3810.01A	10	132961339	133058474	3	0.3639	NEUTRAL	NA	1	TCERG1L
TCGA.A6.3810.01A	10	133106424	135440021	291	-0.2558	NEUTRAL	NA	29	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FRG2B,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.3982	10	133443511	135360142	458	0.3162	NEUTRAL	NA	26	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.3844	10	133647131	135285336	346	0.2951	NEUTRAL	NA	25	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.A008.01A	10	133753494	135440021	161	0.0705	NEUTRAL	NA	28	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FRG2B,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.3891.01A	10	133769150	134014294	23	-0.3764	NEUTRAL	NA	4	"BNIP3,DPYSL4,JAKMIP3,PPP2R2D"
TCGA.AA.3524	10	133811200	133933504	61	0.0513	NEUTRAL	NA	1	JAKMIP3
TCGA.CM.6171	10	133862753	135281743	285	-0.4655	NEUTRAL	NA	23	"ADAM8,ADGRA1,C10orf91,CALY,CFAP46,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PRAP1,PWWP2B,SPRN,STK32C,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A024.01A	10	133946767	134659512	57	0.3448	NEUTRAL	NA	9	"C10orf91,CFAP46,DPYSL4,INPP5A,JAKMIP3,LRRC27,NKX6-2,PWWP2B,STK32C"
TCGA.AA.A01Q.01A	10	133978108	135126234	151	-0.4585	NEUTRAL	NA	16	"ADAM8,ADGRA1,C10orf91,CFAP46,DPYSL4,INPP5A,JAKMIP3,KNDC1,LRRC27,NKX6-2,PWWP2B,STK32C,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.3891.01A	10	134015403	134521742	34	-0.0042	NEUTRAL	NA	6	"C10orf91,DPYSL4,INPP5A,LRRC27,PWWP2B,STK32C"
TCGA.AA.3930.01A	10	134022505	134579214	40	0.0816	NEUTRAL	NA	5	"C10orf91,INPP5A,LRRC27,PWWP2B,STK32C"
TCGA.D5.7000	10	134047529	135434550	274	-0.087	NEUTRAL	NA	23	"ADAM8,ADGRA1,C10orf91,CALY,CFAP46,CYP2E1,ECHS1,FUOM,INPP5A,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.CA.5254	10	134090532	135017318	164	-0.2475	NEUTRAL	NA	9	"ADGRA1,C10orf91,CFAP46,INPP5A,KNDC1,LRRC27,NKX6-2,PWWP2B,STK32C"
TCGA.AA.3939.01A	10	134219048	135440021	196	-0.1703	NEUTRAL	NA	22	"ADAM8,ADGRA1,C10orf91,CALY,CFAP46,CYP2E1,ECHS1,FRG2B,FUOM,INPP5A,KNDC1,MTG1,NKX6-2,PAOX,PRAP1,PWWP2B,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.DM.A1D0	10	134315902	135434550	218	0.0348	NEUTRAL	NA	19	"ADAM8,ADGRA1,CALY,CFAP46,CYP2E1,ECHS1,FUOM,INPP5A,KNDC1,MTG1,NKX6-2,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.3891.01A	10	134523799	134742928	21	-0.496	NEUTRAL	NA	3	"CFAP46,INPP5A,NKX6-2"
TCGA.AG.A01L.01A	10	134646815	135233481	75	0.1363	NEUTRAL	NA	14	"ADAM8,ADGRA1,CALY,CFAP46,ECHS1,FUOM,KNDC1,MTG1,PAOX,PRAP1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A010.01A	10	134647508	134902319	50	-0.3639	NEUTRAL	NA	2	"ADGRA1,CFAP46"
TCGA.AA.A024.01A	10	134660395	134748208	5	-0.4656	NEUTRAL	NA	1	CFAP46
TCGA.AA.3530	10	134664229	135434550	167	0.1113	NEUTRAL	NA	17	"ADAM8,ADGRA1,CALY,CFAP46,CYP2E1,ECHS1,FUOM,KNDC1,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.3891.01A	10	134748208	135440021	103	-0.1322	NEUTRAL	NA	18	"ADAM8,ADGRA1,CALY,CFAP46,CYP2E1,ECHS1,FRG2B,FUOM,KNDC1,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.3906.01A	10	134748208	135440021	93	-0.0751	NEUTRAL	NA	18	"ADAM8,ADGRA1,CALY,CFAP46,CYP2E1,ECHS1,FRG2B,FUOM,KNDC1,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A024.01A	10	134754432	135440021	89	0.3169	NEUTRAL	NA	18	"ADAM8,ADGRA1,CALY,CFAP46,CYP2E1,ECHS1,FRG2B,FUOM,KNDC1,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.CK.5914.01A	10	134755047	135096533	59	-0.5082	NEUTRAL	NA	7	"ADAM8,ADGRA1,CFAP46,KNDC1,TUBGCP2,UTF1,VENTX"
TCGA.AA.A00N.01A	10	134755868	135095679	57	-0.4778	NEUTRAL	NA	7	"ADAM8,ADGRA1,CFAP46,KNDC1,TUBGCP2,UTF1,VENTX"
TCGA.AG.A014.01A	10	135020174	135440021	67	0.3398	NEUTRAL	NA	16	"ADAM8,CALY,CYP2E1,ECHS1,FRG2B,FUOM,KNDC1,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.CA.5254	10	135063026	135434550	109	0.1716	NEUTRAL	NA	12	"ADAM8,CALY,CYP2E1,ECHS1,FUOM,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,ZNF511"
TCGA.AA.A02K.01A	10	135093241	135440183	78	0.043	NEUTRAL	NA	12	"CALY,CYP2E1,ECHS1,FRG2B,FUOM,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,ZNF511"
TCGA.AA.3930.01A	10	135094730	135440021	76	-0.0654	NEUTRAL	NA	12	"CALY,CYP2E1,ECHS1,FRG2B,FUOM,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,ZNF511"
TCGA.AF.3914.01A	10	135107019	135440021	56	0.1925	NEUTRAL	NA	12	"CALY,CYP2E1,ECHS1,FRG2B,FUOM,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,ZNF511"
TCGA.AA.A02E.01A	10	135123258	135440021	48	-0.2695	NEUTRAL	NA	11	"CALY,CYP2E1,ECHS1,FRG2B,FUOM,MTG1,PAOX,PRAP1,SPRN,SYCE1,ZNF511"
TCGA.AA.A01Q.01A	10	135139291	135170669	13	0.2489	NEUTRAL	NA	3	"CALY,FUOM,PRAP1"
TCGA.AG.A01W.01A	10	135191929	135223503	18	0.0987	NEUTRAL	NA	2	"MTG1,PAOX"
TCGA.AM.5820	10	135194889	135304642	30	0.2027	NEUTRAL	NA	3	"MTG1,PAOX,SPRN"
TCGA.CK.5914.01A	10	135212606	135440021	31	-0.4683	NEUTRAL	NA	5	"CYP2E1,FRG2B,MTG1,SPRN,SYCE1"
TCGA.AA.A010.01A	10	135236681	135351228	9	-0.0185	NEUTRAL	NA	2	"CYP2E1,SPRN"
TCGA.AA.3818	10	135242872	135400517	65	0.3585	NEUTRAL	NA	2	"CYP2E1,SYCE1"
TCGA.CM.6171	10	135282200	135434550	70	-0.1483	NEUTRAL	NA	2	"CYP2E1,SYCE1"
TCGA.AA.3844	10	135287263	135322355	9	-0.4339	NEUTRAL	NA	0	None
TCGA.AM.5820	10	135306157	135346926	15	-0.4644	NEUTRAL	NA	1	CYP2E1
TCGA.EF.5830	10	135306157	135346926	15	-0.408	NEUTRAL	NA	1	CYP2E1
TCGA.AA.3844	10	135324369	135358898	22	0.2182	NEUTRAL	NA	1	CYP2E1
TCGA.AA.A01Q.01A	10	135340848	135373539	18	0.1258	NEUTRAL	NA	2	"CYP2E1,SYCE1"
TCGA.AG.A01L.01A	10	135340848	135440021	20	-0.3674	NEUTRAL	NA	3	"CYP2E1,FRG2B,SYCE1"
TCGA.EF.5830	10	135346958	135434550	44	0.0022	NEUTRAL	NA	2	"CYP2E1,SYCE1"
TCGA.AM.5820	10	135347396	135434550	44	0.1216	NEUTRAL	NA	2	"CYP2E1,SYCE1"
TCGA.AA.3982	10	135366101	135434550	30	0.2203	NEUTRAL	NA	1	SYCE1
TCGA.AA.3844	10	135370866	135434550	28	0.1816	NEUTRAL	NA	1	SYCE1
TCGA.A6.6653	10	135371104	135400517	14	0.3656	NEUTRAL	NA	1	SYCE1
TCGA.AF.2692	10	135375693	135434550	18	-0.2547	NEUTRAL	NA	1	SYCE1
TCGA.A6.6653	10	135403584	135434550	14	-0.0448	NEUTRAL	NA	0	None
TCGA.AA.3818	10	135403584	135434550	14	-0.0187	NEUTRAL	NA	0	None
TCGA.DC.6160.01A	11	170187	362068	62	-0.3033	NEUTRAL	NA	13	"ATHL1,BET1L,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.CK.4952.01A	11	170187	30903404	2421	-0.0596	NEUTRAL	NA	324	Too-Many
TCGA.F5.6811.01A	11	170187	133762601	9780	0.1731	NEUTRAL	NA	1258	Too-Many
TCGA.A6.3810.01A	11	180187	237001	28	-0.2373	NEUTRAL	NA	7	"BET1L,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.CK.5914.01A	11	180187	237001	27	-0.3342	NEUTRAL	NA	7	"BET1L,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AA.3862.01A	11	180187	320516	57	0.3169	NEUTRAL	NA	13	"ATHL1,BET1L,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AH.6549.01A	11	180187	375393	65	-0.3537	NEUTRAL	NA	14	"ATHL1,B4GALNT4,BET1L,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AA.3930.01A	11	180187	1015712	238	-0.1081	NEUTRAL	NA	46	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,MUC6,NLRP6,ODF3,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AZ.4684.01A	11	180187	2975707	633	0.0196	NEUTRAL	NA	83	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,ODF3,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AA.3509.01A	11	180187	6964743	1069	-0.0486	NEUTRAL	NA	191	Too-Many
TCGA.DM.A28M.01A	11	180187	9286457	1304	-0.1509	NEUTRAL	NA	219	Too-Many
TCGA.CM.6165.01A	11	180187	17633667	1901	-0.041	NEUTRAL	NA	268	Too-Many
TCGA.CK.4948.01B	11	180187	28045236	2368	0.0472	NEUTRAL	NA	318	Too-Many
TCGA.AA.3980.01A	11	180187	46389182	2919	0.0647	NEUTRAL	NA	389	Too-Many
TCGA.AY.A54L.01A	11	180187	134257391	9802	-0.1019	NEUTRAL	NA	1267	Too-Many
TCGA.CM.4744.01A	11	180187	134257391	9822	-0.0462	NEUTRAL	NA	1267	Too-Many
TCGA.CM.4750.01A	11	180187	134257391	9820	0.1946	NEUTRAL	NA	1267	Too-Many
TCGA.DM.A282.01A	11	180187	134257391	9792	-0.0034	NEUTRAL	NA	1267	Too-Many
TCGA.AG.A01W.01A	11	183049	228942	23	0.3474	NEUTRAL	NA	6	"BET1L,ODF3,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AG.A036.01A	11	183049	133762602	9528	0.1413	NEUTRAL	NA	1258	Too-Many
TCGA.AG.3909.01A	11	193048	199902	6	0.1878	NEUTRAL	NA	3	"ODF3,SCGB1C1,SCGB1C2"
TCGA.AG.3891.01A	11	193048	213260	15	0.0451	NEUTRAL	NA	5	"BET1L,ODF3,RIC8A,SCGB1C1,SCGB1C2"
TCGA.AA.A024.01A	11	193048	236056	23	0.0348	NEUTRAL	NA	6	"BET1L,ODF3,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AA.3861.01A	11	193048	376461	57	-0.0774	NEUTRAL	NA	14	"ATHL1,B4GALNT4,BET1L,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AG.A016.01A	11	193048	988512	129	0.0048	NEUTRAL	NA	45	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,ODF3,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AA.3939.01A	11	193048	993703	233	-0.3869	NEUTRAL	NA	45	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,ODF3,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AA.3967.01A	11	193048	1006474	219	-0.1916	NEUTRAL	NA	45	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,ODF3,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AG.A00C.01A	11	193048	1009083	155	0.098	NEUTRAL	NA	45	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,ODF3,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AG.A02X.01A	11	193048	3036946	254	-0.4357	NEUTRAL	NA	84	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,ODF3,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AF.3914.01A	11	193048	6621364	750	-0.1387	NEUTRAL	NA	177	Too-Many
TCGA.AG.A008.01A	11	193048	7570642	722	-0.1251	NEUTRAL	NA	197	Too-Many
TCGA.AG.A00H.01A	11	193048	46722922	2411	0.0584	NEUTRAL	NA	396	Too-Many
TCGA.AG.A01N.01A	11	193048	61015854	3293	0.0202	NEUTRAL	NA	572	Too-Many
TCGA.AA.A01C.01A	11	193048	61070003	3316	0.0256	NEUTRAL	NA	574	Too-Many
TCGA.AG.A025.01A	11	193048	62334820	3579	-0.1151	NEUTRAL	NA	603	Too-Many
TCGA.AA.A02W.01A	11	193048	66000381	4167	0.0441	NEUTRAL	NA	740	Too-Many
TCGA.AA.3815.01A	11	193048	117062930	7991	-0.0078	NEUTRAL	NA	1099	Too-Many
TCGA.AG.A02G.01A	11	193048	134257391	8338	-0.0936	NEUTRAL	NA	1267	Too-Many
TCGA.AA.A02K.01A	11	193049	213252	15	-0.3229	NEUTRAL	NA	5	"BET1L,ODF3,RIC8A,SCGB1C1,SCGB1C2"
TCGA.AG.A015.01A	11	193675	216622	15	0.3084	NEUTRAL	NA	6	"BET1L,ODF3,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AG.3906.01A	11	193675	224061	18	0.2244	NEUTRAL	NA	6	"BET1L,ODF3,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AG.A01L.01A	11	193675	232935	20	0.1711	NEUTRAL	NA	6	"BET1L,ODF3,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AG.A011.01A	11	193675	320516	47	0.0817	NEUTRAL	NA	13	"ATHL1,BET1L,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AA.A017.01A	11	193675	494644	52	-0.0331	NEUTRAL	NA	19	"ANO9,ATHL1,B4GALNT4,BET1L,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,ODF3,PKP3,PSMD13,PTDSS2,RIC8A,RNH1,SCGB1C1,SCGB1C2,SIGIRR,SIRT3"
TCGA.AA.A02E.01A	11	193675	607619	60	-0.3421	NEUTRAL	NA	24	"ANO9,ATHL1,B4GALNT4,BET1L,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,LMNTD2,LRRC56,NLRP6,ODF3,PHRF1,PKP3,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,SCGB1C1,SCGB1C2,SIGIRR,SIRT3"
TCGA.AA.A02F.01A	11	193675	1298241	95	-0.2221	NEUTRAL	NA	50	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,ODF3,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TOLLIP,TSPAN4"
TCGA.AA.A01I.01A	11	193675	3114709	241	-0.479	NEUTRAL	NA	85	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,ODF3,OSBPL5,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCGB1C1,SCGB1C2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AA.A029.01A	11	193675	7687634	616	-0.3144	NEUTRAL	NA	198	Too-Many
TCGA.AG.A01J.01A	11	193675	19256243	1484	-0.0637	NEUTRAL	NA	295	Too-Many
TCGA.AG.A00Y.01A	11	193675	20676208	1658	0.168	NEUTRAL	NA	300	Too-Many
TCGA.AA.A02H.01A	11	193675	47304345	2461	-0.0043	NEUTRAL	NA	406	Too-Many
TCGA.AA.A01D.01A	11	193675	55889911	2636	0.1381	NEUTRAL	NA	460	Too-Many
TCGA.AA.A00O.01A	11	193675	60696102	3117	-0.0392	NEUTRAL	NA	565	Too-Many
TCGA.AA.A01K.01A	11	193675	60711110	3119	-0.2184	NEUTRAL	NA	566	Too-Many
TCGA.AG.A023.01A	11	193675	61725601	3351	-0.0923	NEUTRAL	NA	592	Too-Many
TCGA.AA.A004.01A	11	193675	62299264	3272	-0.0868	NEUTRAL	NA	602	Too-Many
TCGA.AA.A02R.01A	11	193675	134252583	7835	-0.0867	NEUTRAL	NA	1267	Too-Many
TCGA.AG.A014.01A	11	193675	134252583	8319	-0.0787	NEUTRAL	NA	1267	Too-Many
TCGA.AG.A032.01A	11	193675	134252583	7945	-0.0732	NEUTRAL	NA	1267	Too-Many
TCGA.AA.A02J.01A	11	193675	134257391	7737	-0.1191	NEUTRAL	NA	1267	Too-Many
TCGA.AA.A01Q.01A	11	197258	199320	3	0.3344	NEUTRAL	NA	1	ODF3
TCGA.AA.A01F.01A	11	197258	214181	15	0.1131	NEUTRAL	NA	3	"BET1L,ODF3,RIC8A"
TCGA.AA.A00D.01A	11	197258	3150196	293	0.1284	NEUTRAL	NA	83	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,ODF3,OSBPL5,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AA.A00Q.01A	11	197258	3150196	349	0.0195	NEUTRAL	NA	83	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,ODF3,OSBPL5,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AA.A00L.01A	11	197258	3659898	361	-0.0528	NEUTRAL	NA	87	"ANO9,AP2A2,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,ODF3,OSBPL5,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AG.3611.01A	11	197258	3735011	381	0.1741	NEUTRAL	NA	90	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,ODF3,OSBPL5,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AA.A00F.01A	11	197258	4409488	410	0.3123	NEUTRAL	NA	96	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,ODF3,OR52B4,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RHOG,RIC8A,RNH1,RPLP2,RRM1,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRIM21,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AA.A00A.01A	11	197258	9304943	841	0.0071	NEUTRAL	NA	218	Too-Many
TCGA.AA.A00J.01A	11	197258	34152348	1917	0.0069	NEUTRAL	NA	344	Too-Many
TCGA.AA.A00K.01A	11	197258	134257391	7463	-0.0234	NEUTRAL	NA	1265	Too-Many
TCGA.AA.A01Q.01A	11	199902	299276	46	-0.3632	NEUTRAL	NA	8	"ATHL1,BET1L,IFITM5,NLRP6,ODF3,PSMD13,RIC8A,SIRT3"
TCGA.AM.5820	11	206766	270513	31	0.0758	NEUTRAL	NA	4	"BET1L,PSMD13,RIC8A,SIRT3"
TCGA.DC.6154	11	206766	663462	86	-0.1341	NEUTRAL	NA	26	"ANO9,ATHL1,B4GALNT4,BET1L,CDHR5,DEAF1,DRD4,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,PHRF1,PKP3,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,SCT,SIGIRR,SIRT3"
TCGA.DC.4749	11	206766	838109	107	0.2164	NEUTRAL	NA	38	"ANO9,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80"
TCGA.G4.6306	11	206766	1055905	137	-0.4741	NEUTRAL	NA	43	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.G4.6314	11	206766	2024682	321	-0.0888	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.5M.AAT5	11	206766	2063597	324	-0.0406	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AA.3529	11	206766	2063597	326	0.0203	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.G4.6295	11	206766	2063597	326	0.0021	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AA.3531	11	206766	2095798	331	0.0342	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AG.3727	11	206766	2105214	336	0.1209	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.D5.6533	11	206766	2105214	335	0.2033	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.CM.6166	11	206766	2108793	337	0.3375	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AA.A01V	11	206766	2119118	338	0.1299	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AF.A56N	11	206766	2119118	336	-0.0253	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.DC.5337	11	206766	2119118	334	-0.0585	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.EF.5830	11	206766	2119118	337	0.1434	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.SS.A7HO	11	206766	2119118	338	-0.0241	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AA.3831	11	206766	2128308	340	0.0735	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AG.3894	11	206766	2128308	340	-0.0477	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AH.6897	11	206766	2128308	337	0.334	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AA.3819	11	206766	2141585	343	0.0461	NEUTRAL	NA	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.CA.6715	11	206766	2156212	341	-0.0338	NEUTRAL	NA	65	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AA.3695	11	206766	2156535	345	0.1328	NEUTRAL	NA	65	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.EI.6508	11	206766	2564408	425	-0.0925	NEUTRAL	NA	75	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CD151,CD81,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AA.3844	11	206766	2613840	434	0.299	NEUTRAL	NA	75	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CD151,CD81,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.NH.A6GB	11	206766	2881712	527	-0.1455	NEUTRAL	NA	75	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CD151,CD81,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AA.3519	11	206766	3035069	572	0.1793	NEUTRAL	NA	81	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.DM.A1D6	11	206766	3797672	738	0.1366	NEUTRAL	NA	89	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,OSBPL5,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AA.3530	11	206766	3995198	797	0.3647	NEUTRAL	NA	92	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RHOG,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AA.3941	11	206766	4235774	880	0.0728	NEUTRAL	NA	93	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RHOG,RIC8A,RNH1,RPLP2,RRM1,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.CI.6624	11	206766	4467637	935	0.0226	NEUTRAL	NA	95	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,OR52B4,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RHOG,RIC8A,RNH1,RPLP2,RRM1,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRIM21,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.A6.3807	11	206766	4605025	1029	0.0635	NEUTRAL	NA	99	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,C11orf40,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,OR52B4,OR52K1,OR52K2,OR52M1,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RHOG,RIC8A,RNH1,RPLP2,RRM1,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRIM21,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AA.3848	11	206766	4772065	1138	0.1232	NEUTRAL	NA	105	Too-Many
TCGA.AY.6196	11	206766	5537779	1570	-0.1708	NEUTRAL	NA	138	Too-Many
TCGA.G4.6322	11	206766	5933962	1787	-0.0222	NEUTRAL	NA	153	Too-Many
TCGA.AF.A56K	11	206766	6622713	2037	-0.1055	NEUTRAL	NA	174	Too-Many
TCGA.AG.3898	11	206766	6885428	2175	0.0146	NEUTRAL	NA	183	Too-Many
TCGA.DY.A1DC	11	206766	7061061	2263	-0.0129	NEUTRAL	NA	190	Too-Many
TCGA.A6.A56B	11	206766	7607583	2475	-0.4859	NEUTRAL	NA	194	Too-Many
TCGA.CM.5349	11	206766	9556116	3161	0.236	NEUTRAL	NA	219	Too-Many
TCGA.A6.4105	11	206766	9869223	3256	0.0099	NEUTRAL	NA	222	Too-Many
TCGA.AY.A71X	11	206766	10150211	3329	-0.0638	NEUTRAL	NA	222	Too-Many
TCGA.NH.A6GA	11	206766	10659888	3514	-0.0086	NEUTRAL	NA	228	Too-Many
TCGA.F4.6459	11	206766	11024583	3693	-0.0531	NEUTRAL	NA	231	Too-Many
TCGA.EI.7004	11	206766	11253541	3840	-0.3675	NEUTRAL	NA	231	Too-Many
TCGA.BM.6198	11	206766	11466841	4042	0.03865	NEUTRAL	NA	233	Too-Many
TCGA.CM.4752	11	206766	12054893	4346	-0.0188	NEUTRAL	NA	235	Too-Many
TCGA.F4.6460	11	206766	12183035	4449	0.1375	NEUTRAL	NA	236	Too-Many
TCGA.AA.3697	11	206766	12230671	4474	0.0652	NEUTRAL	NA	236	Too-Many
TCGA.D5.5539	11	206766	12303999	4534	-0.0524	NEUTRAL	NA	236	Too-Many
TCGA.AA.A03J	11	206766	15044334	5397	-0.2949	NEUTRAL	NA	251	Too-Many
TCGA.AA.3968	11	206766	15443280	5684	-0.4154	NEUTRAL	NA	253	Too-Many
TCGA.AA.3811	11	206766	16011728	5930	0.1565	NEUTRAL	NA	255	Too-Many
TCGA.AA.3977	11	206766	16015765	5927	0.0697	NEUTRAL	NA	255	Too-Many
TCGA.AZ.4323	11	206766	16040699	5928	-0.0434	NEUTRAL	NA	255	Too-Many
TCGA.AG.3598	11	206766	18172813	6544	-0.0108	NEUTRAL	NA	271	Too-Many
TCGA.AZ.6600	11	206766	18933048	6823	-0.0315	NEUTRAL	NA	287	Too-Many
TCGA.A6.6653	11	206766	18940321	6833	-0.0077	NEUTRAL	NA	287	Too-Many
TCGA.D5.6898	11	206766	18940321	6817	0.1925	NEUTRAL	NA	287	Too-Many
TCGA.EI.6506	11	206766	18940321	6822	-0.0065	NEUTRAL	NA	287	Too-Many
TCGA.RU.A8FL	11	206766	18940321	6825	0.1889	NEUTRAL	NA	287	Too-Many
TCGA.AA.3685	11	206766	18951136	6836	-0.0757	NEUTRAL	NA	287	Too-Many
TCGA.AA.3858	11	206766	18956689	6838	0.0323	NEUTRAL	NA	288	Too-Many
TCGA.AA.3867	11	206766	20967719	7956	0.2179	NEUTRAL	NA	298	Too-Many
TCGA.AG.3883	11	206766	22037444	8459	0.008	NEUTRAL	NA	298	Too-Many
TCGA.CL.4957	11	206766	22083917	8471	-0.0251	NEUTRAL	NA	298	Too-Many
TCGA.D5.6924	11	206766	23183528	8839	-0.1134	NEUTRAL	NA	304	Too-Many
TCGA.A6.2686	11	206766	24432781	9279	-0.0181	NEUTRAL	NA	304	Too-Many
TCGA.AF.2692	11	206766	25141456	9561	0.3643	NEUTRAL	NA	305	Too-Many
TCGA.D5.6930	11	206766	25543497	9682	0.003	NEUTRAL	NA	305	Too-Many
TCGA.CK.4947	11	206766	25664800	9722	-0.016	NEUTRAL	NA	305	Too-Many
TCGA.DM.A0XF	11	206766	25694999	9743	-0.009	NEUTRAL	NA	305	Too-Many
TCGA.AM.5821	11	206766	26864325	10229	0.0226	NEUTRAL	NA	308	Too-Many
TCGA.G4.6626	11	206766	27115765	10338	0	NEUTRAL	NA	310	Too-Many
TCGA.DM.A285	11	206766	30016195	11062	0.1046	NEUTRAL	NA	316	Too-Many
TCGA.AA.3680	11	206766	30111398	11117	0.0013	NEUTRAL	NA	317	Too-Many
TCGA.AF.6136	11	206766	31679047	11487	-0.3185	NEUTRAL	NA	325	Too-Many
TCGA.D5.6534	11	206766	32131302	11630	-0.2298	NEUTRAL	NA	327	Too-Many
TCGA.G4.6299	11	206766	32231058	11714	0.2914	NEUTRAL	NA	327	Too-Many
TCGA.AG.3731	11	206766	34602360	12525	0.0045	NEUTRAL	NA	346	Too-Many
TCGA.AF.2693	11	206766	34741212	12593	0.0357	NEUTRAL	NA	347	Too-Many
TCGA.A6.5656	11	206766	34821121	12555	-0.0033	NEUTRAL	NA	347	Too-Many
TCGA.DM.A1HB	11	206766	35161075	12513	0.0053	NEUTRAL	NA	350	Too-Many
TCGA.AA.3488	11	206766	36745858	13580	0.3494	NEUTRAL	NA	361	Too-Many
TCGA.AG.3881	11	206766	36920744	13678	-0.2768	NEUTRAL	NA	361	Too-Many
TCGA.AG.A02N	11	206766	37253374	13787	-0.004	NEUTRAL	NA	361	Too-Many
TCGA.NH.A6GC	11	206766	37303653	13789	-0.2898	NEUTRAL	NA	361	Too-Many
TCGA.AG.3890	11	206766	37396460	13790	-0.008	NEUTRAL	NA	361	Too-Many
TCGA.CK.5913	11	206766	37426626	13828	0.0072	NEUTRAL	NA	361	Too-Many
TCGA.D5.6931	11	206766	38264005	14017	0.0061	NEUTRAL	NA	361	Too-Many
TCGA.AF.6655	11	206766	38345436	14046	0.3487	NEUTRAL	NA	361	Too-Many
TCGA.A6.6654	11	206766	38757813	14144	0.3062	NEUTRAL	NA	361	Too-Many
TCGA.AA.3875	11	206766	39215343	14290	0.1668	NEUTRAL	NA	361	Too-Many
TCGA.CM.6170	11	206766	41156308	14918	0.0511	NEUTRAL	NA	362	Too-Many
TCGA.CM.6172	11	206766	42530487	15446	8.00E-04	NEUTRAL	NA	362	Too-Many
TCGA.AA.3864	11	206766	43855071	15838	-0.005	NEUTRAL	NA	365	Too-Many
TCGA.F4.6461	11	206766	43908229	15855	5.00E-04	NEUTRAL	NA	366	Too-Many
TCGA.AG.3725	11	206766	47393637	16978	-0.0012	NEUTRAL	NA	405	Too-Many
TCGA.AY.4071	11	206766	48006059	16988	0.1377	NEUTRAL	NA	419	Too-Many
TCGA.DM.A1D0	11	206766	49398972	17166	0.0187	NEUTRAL	NA	429	Too-Many
TCGA.AG.4015	11	206766	49520158	17213	0.0178	NEUTRAL	NA	429	Too-Many
TCGA.AG.A020	11	206766	50119076	17303	0.0622	NEUTRAL	NA	431	Too-Many
TCGA.A6.2678	11	206766	50169946	17343	0	NEUTRAL	NA	431	Too-Many
TCGA.DT.5265	11	206766	50751357	17373	0.06	NEUTRAL	NA	431	Too-Many
TCGA.AG.3594	11	206766	51192869	17405	0.0057	NEUTRAL	NA	431	Too-Many
TCGA.D5.6923	11	206766	51195050	17355	-0.0233	NEUTRAL	NA	431	Too-Many
TCGA.G5.6233	11	206766	51518518	17444	0.3135	NEUTRAL	NA	433	Too-Many
TCGA.DY.A0XA	11	206766	54840329	17426	0.2198	NEUTRAL	NA	433	Too-Many
TCGA.5M.AAT4	11	206766	55355721	17532	0.0384	NEUTRAL	NA	438	Too-Many
TCGA.CK.6748	11	206766	55741197	17579	0.0008	NEUTRAL	NA	452	Too-Many
TCGA.CI.6622	11	206766	56414124	17764	0.0004	NEUTRAL	NA	477	Too-Many
TCGA.AA.3845	11	206766	56508603	17793	-0.0103	NEUTRAL	NA	480	Too-Many
TCGA.CK.5915	11	206766	57516297	18072	0.1156	NEUTRAL	NA	503	Too-Many
TCGA.DM.A288	11	206766	58936372	18439	-0.0021	NEUTRAL	NA	525	Too-Many
TCGA.CA.5796	11	206766	59329312	18551	0.0004	NEUTRAL	NA	534	Too-Many
TCGA.AF.6672	11	206766	59708243	18639	0.2779	NEUTRAL	NA	541	Too-Many
TCGA.DC.6158	11	206766	59867697	18657	0.0238	NEUTRAL	NA	544	Too-Many
TCGA.A6.2683	11	206766	60422295	18884	0.0521	NEUTRAL	NA	553	Too-Many
TCGA.A6.2681	11	206766	60677904	18973	0.0096	NEUTRAL	NA	560	Too-Many
TCGA.AG.3602	11	206766	61720876	19135	0.0093	NEUTRAL	NA	589	Too-Many
TCGA.AG.3878	11	206766	62105924	19398	0.0079	NEUTRAL	NA	597	Too-Many
TCGA.D5.6538	11	206766	62490218	19444	-0.0271	NEUTRAL	NA	616	Too-Many
TCGA.D5.5541	11	206766	63851632	19686	0	NEUTRAL	NA	648	Too-Many
TCGA.D5.6932	11	206766	64425119	19754	0.0151	NEUTRAL	NA	670	Too-Many
TCGA.DM.A1D7	11	206766	64649221	19825	-0.0451	NEUTRAL	NA	677	Too-Many
TCGA.CK.4951	11	206766	70529149	20830	0.0069	NEUTRAL	NA	823	Too-Many
TCGA.DM.A1D8	11	206766	70877403	21007	-0.0232	NEUTRAL	NA	823	Too-Many
TCGA.AA.3667	11	206766	70895312	21072	0.0331	NEUTRAL	NA	823	Too-Many
TCGA.F5.6812	11	206766	74604917	21849	-0.0434	NEUTRAL	NA	874	Too-Many
TCGA.A6.6648	11	206766	76748335	22475	0.1743	NEUTRAL	NA	896	Too-Many
TCGA.CM.6168	11	206766	76748335	22460	-0.0026	NEUTRAL	NA	896	Too-Many
TCGA.A6.5667	11	206766	78315713	22807	-0.0076	NEUTRAL	NA	915	Too-Many
TCGA.G4.6625	11	206766	78632657	22952	0.0183	NEUTRAL	NA	916	Too-Many
TCGA.A6.2685	11	206766	79388155	23342	0.0128	NEUTRAL	NA	916	Too-Many
TCGA.A6.6142	11	206766	81497906	24327	0.1099	NEUTRAL	NA	916	Too-Many
TCGA.AG.4021	11	206766	81568063	24324	0.0048	NEUTRAL	NA	916	Too-Many
TCGA.G4.6315	11	206766	82827005	24773	-0.1894	NEUTRAL	NA	920	Too-Many
TCGA.DY.A1DG	11	206766	83768842	25074	-0.0355	NEUTRAL	NA	924	Too-Many
TCGA.T9.A92H	11	206766	85224786	25487	0	NEUTRAL	NA	924	Too-Many
TCGA.AA.3527	11	206766	85456848	25511	0.0077	NEUTRAL	NA	929	Too-Many
TCGA.AF.2691	11	206766	87869578	26409	-0.1436	NEUTRAL	NA	939	Too-Many
TCGA.AA.3712	11	206766	88368207	26607	-0.4221	NEUTRAL	NA	941	Too-Many
TCGA.AA.3966	11	206766	88896608	26754	-0.0997	NEUTRAL	NA	941	Too-Many
TCGA.CK.5912	11	206766	91346326	27331	-0.3027	NEUTRAL	NA	954	Too-Many
TCGA.G4.6317	11	206766	95634231	29041	-0.3129	NEUTRAL	NA	983	Too-Many
TCGA.AY.4070	11	206766	96190160	29110	0.3386	NEUTRAL	NA	986	Too-Many
TCGA.AA.3870	11	206766	99623421	30457	0.0008	NEUTRAL	NA	987	Too-Many
TCGA.AA.3842	11	206766	100217434	30684	0.0494	NEUTRAL	NA	987	Too-Many
TCGA.AH.6644	11	206766	102591993	31465	-0.016	NEUTRAL	NA	1002	Too-Many
TCGA.AA.3956	11	206766	103112455	31684	-0.0127	NEUTRAL	NA	1009	Too-Many
TCGA.AA.3522	11	206766	103623054	31923	0.0073	NEUTRAL	NA	1009	Too-Many
TCGA.AA.3558	11	206766	104993408	32455	-0.0012	NEUTRAL	NA	1017	Too-Many
TCGA.EI.6513	11	206766	111720071	34474	0.0068	NEUTRAL	NA	1052	Too-Many
TCGA.AZ.4614	11	206766	112941057	34414	0.0119	NEUTRAL	NA	1069	Too-Many
TCGA.AA.3544	11	206766	116112177	36175	-0.0151	NEUTRAL	NA	1087	Too-Many
TCGA.DM.A28E	11	206766	117119551	36447	-0.0022	NEUTRAL	NA	1099	Too-Many
TCGA.F5.6465	11	206766	118073343	37028	-0.0136	NEUTRAL	NA	1111	Too-Many
TCGA.AA.3518	11	206766	118651808	37056	0.0046	NEUTRAL	NA	1126	Too-Many
TCGA.EI.6510	11	206766	121764233	38219	-0.0146	NEUTRAL	NA	1163	Too-Many
TCGA.AA.3866	11	206766	124095646	39206	0.0546	NEUTRAL	NA	1186	Too-Many
TCGA.AH.6643	11	206766	127273113	40430	-0.3876	NEUTRAL	NA	1234	Too-Many
TCGA.DM.A28F	11	206766	131600722	42106	0.296	NEUTRAL	NA	1253	Too-Many
TCGA.AA.3664	11	206766	132291035	42574	0.0073	NEUTRAL	NA	1254	Too-Many
TCGA.D5.7000	11	206766	134403388	43218	-0.0101	NEUTRAL	NA	1264	Too-Many
TCGA.WS.AB45	11	206766	134903049	43646	-0.0034	NEUTRAL	NA	1264	Too-Many
TCGA.3L.AA1B	11	206766	134944769	43647	-0.0718	NEUTRAL	NA	1264	Too-Many
TCGA.4N.A93T	11	206766	134944769	43676	-0.0112	NEUTRAL	NA	1264	Too-Many
TCGA.4T.AA8H	11	206766	134944769	43672	-0.0106	NEUTRAL	NA	1264	Too-Many
TCGA.5M.AAT6	11	206766	134944769	43666	0.0004	NEUTRAL	NA	1264	Too-Many
TCGA.5M.AATA	11	206766	134944769	43664	-0.0907	NEUTRAL	NA	1264	Too-Many
TCGA.5M.AATE	11	206766	134944769	43675	-0.0358	NEUTRAL	NA	1264	Too-Many
TCGA.A6.2674	11	206766	134944769	43679	-0.0131	NEUTRAL	NA	1264	Too-Many
TCGA.A6.2675	11	206766	134944769	43357	0.2048	NEUTRAL	NA	1264	Too-Many
TCGA.A6.2677	11	206766	134944769	40119	-0.0055	NEUTRAL	NA	1264	Too-Many
TCGA.A6.2679	11	206766	134944769	43649	0.1752	NEUTRAL	NA	1264	Too-Many
TCGA.A6.2680	11	206766	134944769	43628	-0.0379	NEUTRAL	NA	1264	Too-Many
TCGA.A6.2682	11	206766	134944769	42889	0.0507	NEUTRAL	NA	1264	Too-Many
TCGA.A6.2684	11	206766	134944769	40114	-0.0062	NEUTRAL	NA	1264	Too-Many
TCGA.A6.3809	11	206766	134944769	40129	0.0089	NEUTRAL	NA	1264	Too-Many
TCGA.A6.4107	11	206766	134944769	43666	-0.1242	NEUTRAL	NA	1264	Too-Many
TCGA.A6.5657	11	206766	134944769	43589	-0.009	NEUTRAL	NA	1264	Too-Many
TCGA.A6.5659	11	206766	134944769	40063	-0.0538	NEUTRAL	NA	1264	Too-Many
TCGA.A6.5660	11	206766	134944769	43533	0.0886	NEUTRAL	NA	1264	Too-Many
TCGA.A6.5662	11	206766	134944769	43577	0.0257	NEUTRAL	NA	1264	Too-Many
TCGA.A6.5664	11	206766	134944769	43556	-0.001	NEUTRAL	NA	1264	Too-Many
TCGA.A6.5666	11	206766	134944769	43635	-0.0041	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6137	11	206766	134944769	43704	0.0272	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6138	11	206766	134944769	43708	-0.1931	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6140	11	206766	134944769	43704	0	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6141	11	206766	134944769	43666	-0.0072	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6649	11	206766	134944769	43700	-0.1626	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6650	11	206766	134944769	40072	-0.0104	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6651	11	206766	134944769	43499	-0.0751	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6652	11	206766	134944769	43690	-0.0114	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6780	11	206766	134944769	43567	-0.0021	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6781	11	206766	134944769	40033	-0.0009	NEUTRAL	NA	1264	Too-Many
TCGA.A6.6782	11	206766	134944769	43534	-0.0016	NEUTRAL	NA	1264	Too-Many
TCGA.A6.A565	11	206766	134944769	43408	-0.0105	NEUTRAL	NA	1264	Too-Many
TCGA.A6.A566	11	206766	134944769	43327	0.0009	NEUTRAL	NA	1264	Too-Many
TCGA.A6.A567	11	206766	134944769	43354	-0.0092	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3489	11	206766	134944769	43520	0.0077	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3492	11	206766	134944769	43677	0.0101	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3494	11	206766	134944769	43677	0.3055	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3495	11	206766	134944769	43672	0.0391	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3496	11	206766	134944769	43519	0	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3502	11	206766	134944769	43671	-0.0039	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3510	11	206766	134944769	43672	0.0072	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3511	11	206766	134944769	43581	-0.1335	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3514	11	206766	134944769	43674	0.0026	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3516	11	206766	134944769	43628	0.0027	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3517	11	206766	134944769	43654	0	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3524	11	206766	134944769	43647	0.0006	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3526	11	206766	134944769	43667	0.0233	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3532	11	206766	134944769	43679	0.1258	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3534	11	206766	134944769	43679	-0.0142	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3543	11	206766	134944769	43643	0.0048	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3548	11	206766	134944769	43711	-0.0023	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3549	11	206766	134944769	43700	0.0038	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3555	11	206766	134944769	43692	-0.0042	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3560	11	206766	134944769	43701	0.0199	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3561	11	206766	134944769	43697	-0.0109	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3655	11	206766	134944769	43684	0.0072	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3660	11	206766	134944769	43680	0.0031	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3662	11	206766	134944769	43669	-0.4845	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3663	11	206766	134944769	43605	0.0161	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3666	11	206766	134944769	43721	-0.4614	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3673	11	206766	134944769	43723	0.1075	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3675	11	206766	134944769	43719	5.00E-04	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3678	11	206766	134944769	43713	0	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3679	11	206766	134944769	43708	-0.0143	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3681	11	206766	134944769	43696	0	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3684	11	206766	134944769	43715	0	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3688	11	206766	134944769	43725	-0.0668	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3692	11	206766	134944769	43720	-0.2052	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3693	11	206766	134944769	43718	-0.0098	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3696	11	206766	134944769	43724	-0.0034	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3710	11	206766	134944769	43669	0.0025	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3713	11	206766	134944769	43650	-0.0022	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3715	11	206766	134944769	43715	-0.0098	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3812	11	206766	134944769	43713	0.0032	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3814	11	206766	134944769	43713	-0.0029	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3818	11	206766	134944769	43718	0.0029	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3821	11	206766	134944769	43622	0.002	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3833	11	206766	134944769	43718	-0.0033	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3837	11	206766	134944769	43725	0.001	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3841	11	206766	134944769	43717	0.0138	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3846	11	206766	134944769	43652	0.2796	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3851	11	206766	134944769	43626	0.1406	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3852	11	206766	134944769	43716	-0.0003	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3854	11	206766	134944769	43727	-0.0093	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3855	11	206766	134944769	43621	-0.2327	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3856	11	206766	134944769	43722	0.1611	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3869	11	206766	134944769	43651	-0.0095	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3872	11	206766	134944769	43653	-0.1639	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3877	11	206766	134944769	43669	0.0035	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3947	11	206766	134944769	43619	-0.0118	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3949	11	206766	134944769	43646	0.0082	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3950	11	206766	134944769	43659	-0.0057	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3955	11	206766	134944769	43660	0.346	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3971	11	206766	134944769	43658	-0.01	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3972	11	206766	134944769	43657	-0.3111	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3973	11	206766	134944769	43663	-0.0208	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3975	11	206766	134944769	43624	-0.0115	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3976	11	206766	134944769	43656	-0.0247	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3979	11	206766	134944769	43535	1.00E-04	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3984	11	206766	134944769	43616	-0.0146	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3986	11	206766	134944769	43663	-0.0047	NEUTRAL	NA	1264	Too-Many
TCGA.AA.3994	11	206766	134944769	43625	0.0017	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A01P	11	206766	134944769	43647	-0.0101	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A01S	11	206766	134944769	43670	-0.00535	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A01T	11	206766	134944769	43664	-0.2406	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A01X	11	206766	134944769	43626	0.0175	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A01Z	11	206766	134944769	43663	-0.0016	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A022	11	206766	134944769	43598	-0.0074	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A02O	11	206766	134944769	43676	-0.0069	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A02Y	11	206766	134944769	43665	0.0043	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A03F	11	206766	134944769	43666	-0.0061	NEUTRAL	NA	1264	Too-Many
TCGA.AD.5900	11	206766	134944769	43596	-0.0045	NEUTRAL	NA	1264	Too-Many
TCGA.AD.6548	11	206766	134944769	43526	-0.0071	NEUTRAL	NA	1264	Too-Many
TCGA.AD.6890	11	206766	134944769	43645	-0.0064	NEUTRAL	NA	1264	Too-Many
TCGA.AD.6895	11	206766	134944769	43642	-0.0071	NEUTRAL	NA	1264	Too-Many
TCGA.AD.6899	11	206766	134944769	43563	-0.1039	NEUTRAL	NA	1264	Too-Many
TCGA.AD.6963	11	206766	134944769	43646	-0.0026	NEUTRAL	NA	1264	Too-Many
TCGA.AD.6964	11	206766	134944769	43642	-0.0051	NEUTRAL	NA	1264	Too-Many
TCGA.AD.6965	11	206766	134944769	43583	-0.0918	NEUTRAL	NA	1264	Too-Many
TCGA.AD.A5EJ	11	206766	134944769	43446	-0.009	NEUTRAL	NA	1264	Too-Many
TCGA.AD.A5EK	11	206766	134944769	43424	-0.0496	NEUTRAL	NA	1264	Too-Many
TCGA.AF.2687	11	206766	134944769	43574	0.0324	NEUTRAL	NA	1264	Too-Many
TCGA.AF.2689	11	206766	134944769	43666	-0.0281	NEUTRAL	NA	1264	Too-Many
TCGA.AF.2690	11	206766	134944769	43689	0.1047	NEUTRAL	NA	1264	Too-Many
TCGA.AF.3911	11	206766	134944769	43689	-0.0073	NEUTRAL	NA	1264	Too-Many
TCGA.AF.3913	11	206766	134944769	43519	0.3393	NEUTRAL	NA	1264	Too-Many
TCGA.AF.4110	11	206766	134944769	43688	-0.1851	NEUTRAL	NA	1264	Too-Many
TCGA.AF.5654	11	206766	134944769	43586	-0.0046	NEUTRAL	NA	1264	Too-Many
TCGA.AF.A56L	11	206766	134944769	43589	0.0797	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3574	11	206766	134944769	43699	-0.0071	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3580	11	206766	134944769	43695	-0.0015	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3583	11	206766	134944769	42483	-0.0089	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3584	11	206766	134944769	43700	-0.0135	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3592	11	206766	134944769	43698	0.3263	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3599	11	206766	134944769	43653	-0.005	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3612	11	206766	134944769	43451	0.3773	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3726	11	206766	134944769	43698	0.0003	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3728	11	206766	134944769	43723	0.0012	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3732	11	206766	134944769	43562	-0.278	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3742	11	206766	134944769	43348	-0.003	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3882	11	206766	134944769	43721	-0.007	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3885	11	206766	134944769	43706	-0.4731	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3887	11	206766	134944769	43488	-0.0122	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3892	11	206766	134944769	43545	-0.0045	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3893	11	206766	134944769	43265	0.0052	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3896	11	206766	134944769	43558	-0.0098	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3901	11	206766	134944769	43561	-0.0221	NEUTRAL	NA	1264	Too-Many
TCGA.AG.3902	11	206766	134944769	43547	0	NEUTRAL	NA	1264	Too-Many
TCGA.AG.4008	11	206766	134944769	43374	0.0096	NEUTRAL	NA	1264	Too-Many
TCGA.AG.4022	11	206766	134944769	43698	-0.0261	NEUTRAL	NA	1264	Too-Many
TCGA.AG.A026	11	206766	134944769	43637	-0.0039	NEUTRAL	NA	1264	Too-Many
TCGA.AH.6544	11	206766	134944769	43605	-0.2735	NEUTRAL	NA	1264	Too-Many
TCGA.AH.6547	11	206766	134944769	43628	-0.0087	NEUTRAL	NA	1264	Too-Many
TCGA.AH.6903	11	206766	134944769	43592	-0.0014	NEUTRAL	NA	1264	Too-Many
TCGA.AU.3779	11	206766	134944769	43684	-0.3254	NEUTRAL	NA	1264	Too-Many
TCGA.AU.6004	11	206766	134944769	43389	-0.0138	NEUTRAL	NA	1264	Too-Many
TCGA.AY.5543	11	206766	134944769	43339	-0.0027	NEUTRAL	NA	1264	Too-Many
TCGA.AY.6197	11	206766	134944769	42709	-0.0065	NEUTRAL	NA	1264	Too-Many
TCGA.AY.6386	11	206766	134944769	43657	-0.0022	NEUTRAL	NA	1264	Too-Many
TCGA.AY.A69D	11	206766	134944769	43608	-0.329	NEUTRAL	NA	1264	Too-Many
TCGA.AY.A8YK	11	206766	134944769	43677	0.1681	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.4308	11	206766	134944769	43677	-0.0027	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.4315	11	206766	134944769	43655	0.004	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.4615	11	206766	134944769	43658	-0.001	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.4616	11	206766	134944769	43560	-0.0639	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.4681	11	206766	134944769	43660	0.004	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.4682	11	206766	134944769	43673	-0.008	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.5403	11	206766	134944769	43612	0.2055	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.5407	11	206766	134944769	43689	-0.0013	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.6598	11	206766	134944769	43706	-0.0041	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.6599	11	206766	134944769	43706	-0.0091	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.6601	11	206766	134944769	43694	-0.0025	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.6603	11	206766	134944769	43581	0.1147	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.6605	11	206766	134944769	43523	0.002	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.6606	11	206766	134944769	43546	0	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.6607	11	206766	134944769	43566	0.0964	NEUTRAL	NA	1264	Too-Many
TCGA.AZ.6608	11	206766	134944769	43524	0.3454	NEUTRAL	NA	1264	Too-Many
TCGA.CA.5254	11	206766	134944769	43526	-0.0139	NEUTRAL	NA	1264	Too-Many
TCGA.CA.5255	11	206766	134944769	43540	-0.0044	NEUTRAL	NA	1264	Too-Many
TCGA.CA.5256	11	206766	134944769	43350	-0.3147	NEUTRAL	NA	1264	Too-Many
TCGA.CA.5797	11	206766	134944769	43643	0.0385	NEUTRAL	NA	1264	Too-Many
TCGA.CA.6716	11	206766	134944769	43582	-0.2738	NEUTRAL	NA	1264	Too-Many
TCGA.CA.6717	11	206766	134944769	43506	-0.0015	NEUTRAL	NA	1264	Too-Many
TCGA.CA.6718	11	206766	134944769	43541	-0.0104	NEUTRAL	NA	1264	Too-Many
TCGA.CA.6719	11	206766	134944769	43539	0.055	NEUTRAL	NA	1264	Too-Many
TCGA.CI.6619	11	206766	134944769	43616	-0.0088	NEUTRAL	NA	1264	Too-Many
TCGA.CI.6620	11	206766	134944769	43584	0.0044	NEUTRAL	NA	1264	Too-Many
TCGA.CI.6621	11	206766	134944769	43609	0.099	NEUTRAL	NA	1264	Too-Many
TCGA.CI.6623	11	206766	134944769	43617	0.12	NEUTRAL	NA	1264	Too-Many
TCGA.CK.4950	11	206766	134944769	43320	-0.0138	NEUTRAL	NA	1264	Too-Many
TCGA.CK.5916	11	206766	134944769	43599	-0.0051	NEUTRAL	NA	1264	Too-Many
TCGA.CK.6746	11	206766	134944769	43558	-0.0076	NEUTRAL	NA	1264	Too-Many
TCGA.CK.6747	11	206766	134944769	43512	-0.0164	NEUTRAL	NA	1264	Too-Many
TCGA.CK.6751	11	206766	134944769	43440	-0.0014	NEUTRAL	NA	1264	Too-Many
TCGA.CL.5917	11	206766	134944769	43583	-0.0129	NEUTRAL	NA	1264	Too-Many
TCGA.CL.5918	11	206766	134944769	43585	-0.0002	NEUTRAL	NA	1264	Too-Many
TCGA.CM.4743	11	206766	134944769	43662	0	NEUTRAL	NA	1264	Too-Many
TCGA.CM.4746	11	206766	134944769	43658	0.0024	NEUTRAL	NA	1264	Too-Many
TCGA.CM.4747	11	206766	134944769	43652	-0.0081	NEUTRAL	NA	1264	Too-Many
TCGA.CM.4748	11	206766	134944769	43677	0	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5341	11	206766	134944769	43681	0.0486	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5344	11	206766	134944769	43661	0.0369	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5348	11	206766	134944769	43665	0.0311	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5860	11	206766	134944769	43608	0.0043	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5861	11	206766	134944769	43637	-0.0025	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5862	11	206766	134944769	43575	-0.1857	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5863	11	206766	134944769	43598	-0.0596	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5864	11	206766	134944769	43601	-0.164	NEUTRAL	NA	1264	Too-Many
TCGA.CM.5868	11	206766	134944769	43629	0.1031	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6161	11	206766	134944769	43606	-0.0646	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6162	11	206766	134944769	43538	-0.0167	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6163	11	206766	134944769	43505	-0.4033	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6164	11	206766	134944769	43613	0.0067	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6167	11	206766	134944769	43672	-0.0119	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6169	11	206766	134944769	43442	0.0701	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6171	11	206766	134944769	43695	-0.021	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6674	11	206766	134944769	43570	-0.0086	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6676	11	206766	134944769	43510	0.0355	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6677	11	206766	134944769	43472	0.1399	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6678	11	206766	134944769	43558	-0.1613	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6679	11	206766	134944769	43522	0.00215	NEUTRAL	NA	1264	Too-Many
TCGA.CM.6680	11	206766	134944769	43590	-0.0574	NEUTRAL	NA	1264	Too-Many
TCGA.D5.5537	11	206766	134944769	43577	-0.399	NEUTRAL	NA	1264	Too-Many
TCGA.D5.5540	11	206766	134944769	43690	0.0021	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6529	11	206766	134944769	43692	-0.2287	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6530	11	206766	134944769	43681	-0.0048	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6531	11	206766	134944769	43660	0	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6532	11	206766	134944769	43653	0	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6535	11	206766	134944769	43689	0	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6537	11	206766	134944769	43434	-0.0209	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6539	11	206766	134944769	43587	-0.0048	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6540	11	206766	134944769	43594	0.0045	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6541	11	206766	134944769	43682	-0.0053	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6920	11	206766	134944769	43567	-0.0049	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6922	11	206766	134944769	43573	-0.0107	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6926	11	206766	134944769	43596	-0.0897	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6927	11	206766	134944769	43602	-0.0068	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6928	11	206766	134944769	43592	-0.0133	NEUTRAL	NA	1264	Too-Many
TCGA.D5.6929	11	206766	134944769	43600	0.2447	NEUTRAL	NA	1264	Too-Many
TCGA.DC.4745	11	206766	134944769	43697	0.0359	NEUTRAL	NA	1264	Too-Many
TCGA.DC.5869	11	206766	134944769	43593	0.2421	NEUTRAL	NA	1264	Too-Many
TCGA.DC.6155	11	206766	134944769	43462	-0.3905	NEUTRAL	NA	1264	Too-Many
TCGA.DC.6157	11	206766	134944769	43256	0.2298	NEUTRAL	NA	1264	Too-Many
TCGA.DC.6681	11	206766	134944769	43597	-0.0272	NEUTRAL	NA	1264	Too-Many
TCGA.DC.6682	11	206766	134944769	43621	0	NEUTRAL	NA	1264	Too-Many
TCGA.DC.6683	11	206766	134944769	43582	-0.0488	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A0X9	11	206766	134944769	43684	-0.0067	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A0XD	11	206766	134944769	43504	0.001	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A1D4	11	206766	134944769	43692	0	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A1D9	11	206766	134944769	43654	0.0027	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A1DA	11	206766	134944769	43662	-0.1362	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A1DB	11	206766	134944769	43681	0	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A1HA	11	206766	134944769	43690	0.0219	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A280	11	206766	134944769	43585	0.0015	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A28A	11	206766	134944769	43597	-0.0504	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A28C	11	206766	134944769	43620	0.0014	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A28G	11	206766	134944769	43624	0.0076	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A28H	11	206766	134944769	43609	-0.0054	NEUTRAL	NA	1264	Too-Many
TCGA.DM.A28K	11	206766	134944769	43559	0	NEUTRAL	NA	1264	Too-Many
TCGA.DY.A1DD	11	206766	134944769	43686	0	NEUTRAL	NA	1264	Too-Many
TCGA.DY.A1H8	11	206766	134944769	43689	-0.0045	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6507	11	206766	134944769	43688	0.0039	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6511	11	206766	134944769	43678	0	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6512	11	206766	134944769	43691	-0.0027	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6514	11	206766	134944769	43622	0.1322	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6881	11	206766	134944769	43596	-0.2355	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6882	11	206766	134944769	43600	0.0009	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6883	11	206766	134944769	43565	-0.007	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6884	11	206766	134944769	43550	-0.0022	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6885	11	206766	134944769	43583	0.1794	NEUTRAL	NA	1264	Too-Many
TCGA.EI.6917	11	206766	134944769	43559	-0.0229	NEUTRAL	NA	1264	Too-Many
TCGA.EI.7002	11	206766	134944769	43594	-0.0292	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6463	11	206766	134944769	43670	-0.014	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6569	11	206766	134944769	43699	-0.0139	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6570	11	206766	134944769	43697	-0.0147	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6703	11	206766	134944769	43605	-0.0531	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6704	11	206766	134944769	43602	0	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6805	11	206766	134944769	43583	0.0017	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6806	11	206766	134944769	43462	-0.0156	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6807	11	206766	134944769	43541	-0.0362	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6808	11	206766	134944769	43582	0.0116	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6809	11	206766	134944769	43583	-0.0031	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6854	11	206766	134944769	43581	-0.0065	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6855	11	206766	134944769	43569	-0.0065	NEUTRAL	NA	1264	Too-Many
TCGA.F4.6856	11	206766	134944769	43603	0.0024	NEUTRAL	NA	1264	Too-Many
TCGA.F5.6464	11	206766	134944769	43699	-0.0209	NEUTRAL	NA	1264	Too-Many
TCGA.F5.6571	11	206766	134944769	43602	0.0024	NEUTRAL	NA	1264	Too-Many
TCGA.F5.6702	11	206766	134944769	43503	0.0276	NEUTRAL	NA	1264	Too-Many
TCGA.F5.6810	11	206766	134944769	43622	0.1811	NEUTRAL	NA	1264	Too-Many
TCGA.F5.6814	11	206766	134944769	43587	0	NEUTRAL	NA	1264	Too-Many
TCGA.F5.6861	11	206766	134944769	43573	0.0018	NEUTRAL	NA	1264	Too-Many
TCGA.F5.6863	11	206766	134944769	43593	-0.0215	NEUTRAL	NA	1264	Too-Many
TCGA.F5.6864	11	206766	134944769	43598	0.0115	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6293	11	206766	134944769	43645	-0.0048	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6294	11	206766	134944769	43699	-0.0094	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6297	11	206766	134944769	43686	0	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6298	11	206766	134944769	43686	-0.0251	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6302	11	206766	134944769	43677	-0.0095	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6303	11	206766	134944769	43697	0.1643	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6304	11	206766	134944769	43597	-0.0073	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6307	11	206766	134944769	43688	0.2682	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6309	11	206766	134944769	43593	0	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6310	11	206766	134944769	43666	0.1441	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6311	11	206766	134944769	43693	-0.0213	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6320	11	206766	134944769	43697	-0.0129	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6321	11	206766	134944769	43692	-0.0015	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6323	11	206766	134944769	43691	-0.0114	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6586	11	206766	134944769	43701	-0.0171	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6588	11	206766	134944769	43693	-0.0072	NEUTRAL	NA	1264	Too-Many
TCGA.G4.6628	11	206766	134944769	43574	-0.0001	NEUTRAL	NA	1264	Too-Many
TCGA.G5.6235	11	206766	134944769	43703	-0.001	NEUTRAL	NA	1264	Too-Many
TCGA.G5.6572	11	206766	134944769	43602	-0.0024	NEUTRAL	NA	1264	Too-Many
TCGA.G5.6641	11	206766	134944769	43581	-0.0213	NEUTRAL	NA	1264	Too-Many
TCGA.NH.A50T	11	206766	134944769	43407	-0.2623	NEUTRAL	NA	1264	Too-Many
TCGA.NH.A50U	11	206766	134944769	43672	0	NEUTRAL	NA	1264	Too-Many
TCGA.NH.A50V	11	206766	134944769	43424	-0.0091	NEUTRAL	NA	1264	Too-Many
TCGA.NH.A5IV	11	206766	134944769	43588	0.003	NEUTRAL	NA	1264	Too-Many
TCGA.NH.A8F7	11	206766	134944769	43518	-0.0292	NEUTRAL	NA	1264	Too-Many
TCGA.NH.A8F8	11	206766	134944769	43686	-0.0038	NEUTRAL	NA	1264	Too-Many
TCGA.QG.A5YV	11	206766	134944769	43352	-0.0068	NEUTRAL	NA	1264	Too-Many
TCGA.QG.A5YW	11	206766	134944769	43412	0.2716	NEUTRAL	NA	1264	Too-Many
TCGA.QG.A5YX	11	206766	134944769	43294	-0.0235	NEUTRAL	NA	1264	Too-Many
TCGA.QG.A5Z1	11	206766	134944769	43288	-0.0111	NEUTRAL	NA	1264	Too-Many
TCGA.QG.A5Z2	11	206766	134944769	43332	-0.0157	NEUTRAL	NA	1264	Too-Many
TCGA.QL.A97D	11	206766	134944769	43675	0.0006	NEUTRAL	NA	1264	Too-Many
TCGA.AA.A02K.01A	11	214204	292498	27	-0.0023	NEUTRAL	NA	5	"ATHL1,NLRP6,PSMD13,RIC8A,SIRT3"
TCGA.AA.A01F.01A	11	216622	252465	18	-0.4318	NEUTRAL	NA	2	"PSMD13,SIRT3"
TCGA.AG.A015.01A	11	218814	252465	16	-0.4853	NEUTRAL	NA	2	"PSMD13,SIRT3"
TCGA.AG.A01L.01A	11	233304	251803	10	-0.3513	NEUTRAL	NA	2	"PSMD13,SIRT3"
TCGA.AA.A024.01A	11	237001	2943283	255	0.3353	NEUTRAL	NA	75	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BRSK2,C11orf21,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AG.3891.01A	11	251803	380773	22	0.0981	NEUTRAL	NA	8	"ATHL1,B4GALNT4,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,PSMD13"
TCGA.AG.A01L.01A	11	252465	284181	6	0.0774	NEUTRAL	NA	2	"NLRP6,PSMD13"
TCGA.AG.A01W.01A	11	268484	1273432	296	0.3422	NEUTRAL	NA	42	"ANO9,AP2A2,ATHL1,B4GALNT4,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AA.A01F.01A	11	278514	644502	70	0.0596	NEUTRAL	NA	22	"ANO9,ATHL1,B4GALNT4,CDHR5,DEAF1,DRD4,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,PHRF1,PKP3,PTDSS2,RASSF7,RNH1,SCT,SIGIRR"
TCGA.AG.A015.01A	11	278514	822360	79	0.0279	NEUTRAL	NA	32	"ANO9,ATHL1,B4GALNT4,CDHR5,CEND1,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80"
TCGA.AA.A02K.01A	11	308967	487369	28	0.0352	NEUTRAL	NA	8	"ANO9,B4GALNT4,IFITM1,IFITM2,IFITM3,PKP3,PTDSS2,SIGIRR"
TCGA.DC.6160.01A	11	362612	1368040	366	0.1017	NEUTRAL	NA	37	"ANO9,AP2A2,B4GALNT4,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IRF7,LMNTD2,LRRC56,MUC2,MUC5AC,MUC5B,MUC6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80,TOLLIP,TSPAN4"
TCGA.AA.A00N.01A	11	372068	450448	40	-0.4748	NEUTRAL	NA	5	"ANO9,B4GALNT4,PKP3,PTDSS2,SIGIRR"
TCGA.AA.3862.01A	11	372612	1580088	260	-0.4204	NEUTRAL	NA	40	"ANO9,AP2A2,B4GALNT4,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,DUSP8,EPS8L2,HRAS,IRF7,LMNTD2,LRRC56,MOB2,MUC2,MUC5AC,MUC5B,MUC6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80,TOLLIP,TSPAN4"
TCGA.AG.A011.01A	11	375393	4869459	337	-0.168	NEUTRAL	NA	98	"ANO9,AP2A2,ART1,ART5,ASCL2,B4GALNT4,BRSK2,C11orf21,C11orf40,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM10,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NUP98,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR52B4,OR52I1,OR52I2,OR52K1,OR52K2,OR52M1,OR52R1,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PTDSS2,RASSF7,RHOG,RNH1,RPLP2,RRM1,SCT,SIGIRR,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRIM21,TRIM68,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AG.A01L.01A	11	379839	4150246	310	-0.0726	NEUTRAL	NA	83	"ANO9,AP2A2,ART1,ART5,ASCL2,B4GALNT4,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM10,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NUP98,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PTDSS2,RASSF7,RHOG,RNH1,RPLP2,RRM1,SCT,SIGIRR,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AH.6549.01A	11	380773	2017927	447	-0.3837	NEUTRAL	NA	54	"ANO9,AP2A2,B4GALNT4,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM10,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AG.3906.01A	11	396854	532585	22	-0.2337	NEUTRAL	NA	6	"ANO9,HRAS,PKP3,PTDSS2,RNH1,SIGIRR"
TCGA.AG.3891.01A	11	408658	1009083	136	0.0664	NEUTRAL	NA	30	"ANO9,AP2A2,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IRF7,LMNTD2,LRRC56,PANO1,PDDC1,PHRF1,PIDD1,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AA.A02K.01A	11	488171	562130	27	-0.3926	NEUTRAL	NA	6	"HRAS,LMNTD2,LRRC56,PTDSS2,RASSF7,RNH1"
TCGA.AG.3909.01A	11	498805	755837	60	-0.0166	NEUTRAL	NA	14	"CDHR5,DEAF1,DRD4,EPS8L2,HRAS,IRF7,LMNTD2,LRRC56,PHRF1,RASSF7,RNH1,SCT,TALDO1,TMEM80"
TCGA.AG.3906.01A	11	533231	686821	25	0.2976	NEUTRAL	NA	10	"CDHR5,DEAF1,DRD4,HRAS,IRF7,LMNTD2,LRRC56,PHRF1,RASSF7,SCT"
TCGA.AA.A01Q.01A	11	534165	904659	122	-0.3676	NEUTRAL	NA	25	"CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IRF7,LMNTD2,LRRC56,PANO1,PDDC1,PHRF1,PIDD1,PNPLA2,POLR2L,RASSF7,RPLP2,SCT,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AA.A017.01A	11	551604	56954727	2680	-0.0019	NEUTRAL	NA	466	Too-Many
TCGA.AA.A02K.01A	11	563152	611583	21	-0.0385	NEUTRAL	NA	2	"PHRF1,RASSF7"
TCGA.AD.6889	11	620598	134944769	43552	-0.011	NEUTRAL	NA	1242	Too-Many
TCGA.AA.A02K.01A	11	640198	688304	11	0.3229	NEUTRAL	NA	2	"DEAF1,DRD4"
TCGA.AA.A01F.01A	11	653906	691454	10	-0.4734	NEUTRAL	NA	1	DEAF1
TCGA.DC.6154	11	678560	28960706	10669	0.3197	NEUTRAL	NA	291	Too-Many
TCGA.AA.A02K.01A	11	691453	970122	72	-0.2894	NEUTRAL	NA	17	"AP2A2,CD151,CEND1,CHID1,CRACR2B,DEAF1,EPS8L2,PANO1,PDDC1,PIDD1,PNPLA2,POLR2L,RPLP2,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.D5.5538	11	692383	2793864	414	0.341	NEUTRAL	NA	50	"AP2A2,ASCL2,BRSK2,C11orf21,CD151,CD81,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DUSP8,EPS8L2,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,PANO1,PDDC1,PIDD1,PNPLA2,POLR2L,RPLP2,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AA.A01F.01A	11	700092	1579291	62	-0.0553	NEUTRAL	NA	24	"AP2A2,BRSK2,CD151,CEND1,CHID1,CRACR2B,DUSP8,EPS8L2,MOB2,MUC2,MUC5AC,MUC5B,MUC6,PANO1,PDDC1,PIDD1,PNPLA2,POLR2L,RPLP2,SLC25A22,TALDO1,TMEM80,TOLLIP,TSPAN4"
TCGA.AG.3906.01A	11	702906	985416	43	0.0966	NEUTRAL	NA	16	"AP2A2,CD151,CEND1,CHID1,CRACR2B,EPS8L2,PANO1,PDDC1,PIDD1,PNPLA2,POLR2L,RPLP2,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AG.3909.01A	11	770812	3023136	231	-0.0945	NEUTRAL	NA	52	"AP2A2,ASCL2,BRSK2,C11orf21,CARS,CD151,CD81,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DUSP8,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,PANO1,PDDC1,PHLDA2,PIDD1,PNPLA2,POLR2L,RPLP2,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TH,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AG.A015.01A	11	828607	1643325	68	-0.4134	NEUTRAL	NA	18	"AP2A2,BRSK2,CD151,CHID1,CRACR2B,DUSP8,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,MOB2,MUC2,MUC5AC,MUC5B,MUC6,POLR2L,TOLLIP,TSPAN4"
TCGA.AG.4009.01A	11	837926	4144386	305	-0.1829	NEUTRAL	NA	56	"AP2A2,ART1,ART5,ASCL2,BRSK2,C11orf21,CARS,CD151,CD81,CDKN1C,CHID1,CHRNA10,CTSD,DUSP8,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NUP98,OSBPL5,PGAP2,PHLDA2,POLR2L,RHOG,RRM1,SLC22A18,SLC22A18AS,STIM1,SYT8,TH,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AA.A010.01A	11	925957	1000385	14	-0.4127	NEUTRAL	NA	1	AP2A2
TCGA.DC.4749	11	950292	134944769	43586	0.3122	NEUTRAL	NA	1223	Too-Many
TCGA.AA.A02K.01A	11	972015	1103804	73	0.1455	NEUTRAL	NA	3	"AP2A2,MUC2,MUC6"
TCGA.AA.A00N.01A	11	1013407	1605604	164	-0.5062	NEUTRAL	NA	9	"BRSK2,DUSP8,KRTAP5-1,MOB2,MUC2,MUC5AC,MUC5B,MUC6,TOLLIP"
TCGA.AG.A00C.01A	11	1015712	1272429	36	-0.3755	NEUTRAL	NA	4	"MUC2,MUC5AC,MUC5B,MUC6"
TCGA.AA.A010.01A	11	1019237	1087398	38	-0.4192	NEUTRAL	NA	2	"MUC2,MUC6"
TCGA.G4.6306	11	1060418	33383338	11855	-0.0507	NEUTRAL	NA	293	Too-Many
TCGA.AA.A010.01A	11	1095627	1260054	50	-0.5014	NEUTRAL	NA	3	"MUC2,MUC5AC,MUC5B"
TCGA.AA.A02K.01A	11	1246839	1776110	85	-0.232	NEUTRAL	NA	13	"BRSK2,CTSD,DUSP8,IFITM10,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,MOB2,MUC5B,TOLLIP"
TCGA.AG.3891.01A	11	1247858	2937825	135	-0.17	NEUTRAL	NA	33	"ASCL2,BRSK2,C11orf21,CD81,CDKN1C,CTSD,DUSP8,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRPL23,MUC5B,SLC22A18,SLC22A18AS,SYT8,TH,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSSC4"
TCGA.AA.A01Q.01A	11	1262040	1311435	5	-0.2421	NEUTRAL	NA	2	"MUC5B,TOLLIP"
TCGA.AG.3605.01A	11	1273565	61511007	98	-0.2651	NEUTRAL	NA	536	Too-Many
TCGA.AA.A00Z.01A	11	1273565	62677161	106	-0.3731	NEUTRAL	NA	582	Too-Many
TCGA.AG.A00C.01A	11	1280942	4388544	205	0.092	NEUTRAL	NA	49	"ART1,ART5,ASCL2,BRSK2,C11orf21,CARS,CD81,CDKN1C,CHRNA10,CTSD,DUSP8,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC5B,NAP1L4,NUP98,OR52B4,OSBPL5,PGAP2,PHLDA2,RHOG,RRM1,SLC22A18,SLC22A18AS,STIM1,SYT8,TH,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSSC4,ZNF195"
TCGA.AA.3967.01A	11	1280942	57136776	2907	-0.2494	NEUTRAL	NA	442	Too-Many
TCGA.AG.3906.01A	11	1283395	1860865	29	0.048	NEUTRAL	NA	15	"BRSK2,CTSD,DUSP8,IFITM10,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,MOB2,MUC5B,SYT8,TNNI2,TOLLIP"
TCGA.AG.A016.01A	11	1298241	1579291	7	0.2067	NEUTRAL	NA	4	"BRSK2,DUSP8,MOB2,TOLLIP"
TCGA.AA.A01Q.01A	11	1316848	1586777	8	0.3272	NEUTRAL	NA	4	"BRSK2,DUSP8,MOB2,TOLLIP"
TCGA.DC.6160.01A	11	1413807	2145168	113	-0.244	NEUTRAL	NA	17	"BRSK2,CTSD,DUSP8,HOTS,IFITM10,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRPL23,SYT8,TNNI2,TNNT3"
TCGA.AM.5820	11	1545181	1841826	85	0.1656	NEUTRAL	NA	9	"CTSD,DUSP8,IFITM10,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6"
TCGA.AG.A01W.01A	11	1562173	1713036	9	-0.4158	NEUTRAL	NA	6	"DUSP8,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5"
TCGA.AA.3930.01A	11	1580088	1778507	18	0.2796	NEUTRAL	NA	9	"CTSD,DUSP8,IFITM10,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6"
TCGA.AA.A010.01A	11	1606066	1756468	12	-0.1403	NEUTRAL	NA	7	"IFITM10,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6"
TCGA.A6.3810.01A	11	1618908	1651159	9	-0.0935	NEUTRAL	NA	4	"KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5"
TCGA.AA.A00N.01A	11	1642587	3026533	185	-0.5136	NEUTRAL	NA	28	"ASCL2,C11orf21,CARS,CD81,CDKN1C,CTSD,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MRPL23,NAP1L4,PHLDA2,SLC22A18,SLC22A18AS,SYT8,TH,TNNI2,TNNT3,TRPM5,TSPAN32,TSSC4"
TCGA.AA.A01Q.01A	11	1651159	1944692	28	-0.4208	NEUTRAL	NA	8	"CTSD,IFITM10,KRTAP5-5,KRTAP5-6,LSP1,SYT8,TNNI2,TNNT3"
TCGA.AG.A015.01A	11	1651159	1944692	17	0.3078	NEUTRAL	NA	8	"CTSD,IFITM10,KRTAP5-5,KRTAP5-6,LSP1,SYT8,TNNI2,TNNT3"
TCGA.A6.3810.01A	11	1718688	2444098	130	-0.4866	NEUTRAL	NA	19	"ASCL2,C11orf21,CD81,CTSD,HOTS,IFITM10,IGF2,INS,INS-IGF2,KRTAP5-6,LSP1,MRPL23,SYT8,TH,TNNI2,TNNT3,TRPM5,TSPAN32,TSSC4"
TCGA.AA.A01F.01A	11	1718688	3022322	99	0.3417	NEUTRAL	NA	26	"ASCL2,C11orf21,CARS,CD81,CDKN1C,CTSD,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-6,LSP1,MRPL23,NAP1L4,PHLDA2,SLC22A18,SLC22A18AS,SYT8,TH,TNNI2,TNNT3,TRPM5,TSPAN32,TSSC4"
TCGA.AG.A016.01A	11	1774684	4408133	175	-0.1044	NEUTRAL	NA	38	"ART1,ART5,ASCL2,C11orf21,CARS,CD81,CDKN1C,CHRNA10,CTSD,HOTS,IGF2,INS,INS-IGF2,KCNQ1,LSP1,MRGPRE,MRGPRG,MRPL23,NAP1L4,NUP98,OR52B4,OSBPL5,PGAP2,PHLDA2,RHOG,RRM1,SLC22A18,SLC22A18AS,STIM1,SYT8,TH,TNNI2,TNNT3,TRIM21,TRPM5,TSPAN32,TSSC4,ZNF195"
TCGA.AA.3930.01A	11	1780192	2799160	107	-0.4452	NEUTRAL	NA	18	"ASCL2,C11orf21,CD81,CTSD,HOTS,IGF2,INS,INS-IGF2,KCNQ1,LSP1,MRPL23,SYT8,TH,TNNI2,TNNT3,TRPM5,TSPAN32,TSSC4"
TCGA.AA.A02K.01A	11	1857356	1905674	13	-0.3456	NEUTRAL	NA	3	"LSP1,SYT8,TNNI2"
TCGA.AA.A02K.01A	11	1907914	2168804	27	0.1096	NEUTRAL	NA	6	"HOTS,IGF2,INS-IGF2,LSP1,MRPL23,TNNT3"
TCGA.AM.5820	11	1917871	1920284	3	-0.1118	NEUTRAL	NA	0	None
TCGA.AG.A015.01A	11	1947604	5624453	236	-0.2688	NEUTRAL	NA	81	"ART1,ART5,ASCL2,C11orf21,C11orf40,CARS,CD81,CDKN1C,CHRNA10,HBB,HBD,HBE1,HBG1,HBG2,HOTS,IGF2,INS,INS-IGF2,KCNQ1,MMP26,MRGPRE,MRGPRG,MRPL23,NAP1L4,NUP98,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52B6,OR52D1,OR52E2,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,OSBPL5,PGAP2,PHLDA2,RHOG,RRM1,SLC22A18,SLC22A18AS,STIM1,TH,TNNT3,TRIM21,TRIM6,TRIM6-TRIM34,TRIM68,TRPM5,TSPAN32,TSSC4,UBQLN3,UBQLNL,ZNF195"
TCGA.AG.3906.01A	11	1977459	2549103	23	0.0293	NEUTRAL	NA	13	"ASCL2,C11orf21,CD81,HOTS,IGF2,INS,INS-IGF2,KCNQ1,MRPL23,TH,TRPM5,TSPAN32,TSSC4"
TCGA.AM.5820	11	2063597	2105214	11	0.1159	NEUTRAL	NA	0	None
TCGA.5M.AAT5	11	2128308	2241320	21	0.2887	NEUTRAL	NA	4	"IGF2,INS,INS-IGF2,TH"
TCGA.DC.6160.01A	11	2145619	2566480	63	0.1759	NEUTRAL	NA	11	"ASCL2,C11orf21,CD81,IGF2,INS,INS-IGF2,KCNQ1,TH,TRPM5,TSPAN32,TSSC4"
TCGA.AH.6549.01A	11	2154176	2192884	22	0.0806	NEUTRAL	NA	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AA.A02K.01A	11	2170320	3662994	154	-0.2392	NEUTRAL	NA	22	"ART5,ASCL2,C11orf21,CARS,CD81,CDKN1C,IGF2,INS,INS-IGF2,KCNQ1,MRGPRE,MRGPRG,NAP1L4,OSBPL5,PHLDA2,SLC22A18,SLC22A18AS,TH,TRPM5,TSPAN32,TSSC4,ZNF195"
TCGA.AA.A010.01A	11	2189671	2339037	20	-8.00E-04	NEUTRAL	NA	4	"ASCL2,C11orf21,TH,TSPAN32"
TCGA.AA.A01Q.01A	11	2192884	2482884	41	-0.1765	NEUTRAL	NA	8	"ASCL2,C11orf21,CD81,KCNQ1,TH,TRPM5,TSPAN32,TSSC4"
TCGA.DC.5337	11	2223359	57350783	17661	0.0036	NEUTRAL	NA	427	Too-Many
TCGA.AA.3695	11	2241214	27360534	10099	0.0099	NEUTRAL	NA	243	Too-Many
TCGA.AF.A56N	11	2241214	50297465	16985	-0.0061	NEUTRAL	NA	363	Too-Many
TCGA.AH.6897	11	2241214	126270373	39579	0.291	NEUTRAL	NA	1165	Too-Many
TCGA.AA.3529	11	2241320	9537977	2801	0.0129	NEUTRAL	NA	151	Too-Many
TCGA.AM.5820	11	2245344	2528323	55	0.3382	NEUTRAL	NA	7	"ASCL2,C11orf21,CD81,KCNQ1,TRPM5,TSPAN32,TSSC4"
TCGA.G4.6295	11	2245344	134944769	43341	0.0049	NEUTRAL	NA	1196	Too-Many
TCGA.SS.A7HO	11	2255562	28156167	10260	0.019	NEUTRAL	NA	248	Too-Many
TCGA.AA.3531	11	2255562	134944769	43311	-0.0146	NEUTRAL	NA	1196	Too-Many
TCGA.AA.A01V	11	2260542	19578054	6821	0.0292	NEUTRAL	NA	225	Too-Many
TCGA.CA.6715	11	2260542	24786730	9042	-0.0066	NEUTRAL	NA	237	Too-Many
TCGA.AA.3831	11	2267935	22469479	8200	0.0059	NEUTRAL	NA	232	Too-Many
TCGA.CM.6166	11	2270240	134944769	43323	0.3632	NEUTRAL	NA	1196	Too-Many
TCGA.AA.3989	11	2282903	5754394	1343	0.2773	NEUTRAL	NA	77	"ART1,ART5,ASCL2,C11orf21,C11orf40,CARS,CD81,CDKN1C,CHRNA10,HBB,HBD,HBE1,HBG1,HBG2,KCNQ1,MMP26,MRGPRE,MRGPRG,NAP1L4,NUP98,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52B6,OR52D1,OR52E2,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,OSBPL5,PGAP2,PHLDA2,RHOG,RRM1,SLC22A18,SLC22A18AS,STIM1,TRIM21,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,TRPM5,TSPAN32,TSSC4,UBQLN3,UBQLNL,ZNF195"
TCGA.5M.AAT5	11	2282903	24247530	8872	0.0179	NEUTRAL	NA	236	Too-Many
TCGA.AG.3894	11	2282903	134944769	43177	-0.0007	NEUTRAL	NA	1196	Too-Many
TCGA.AH.6549.01A	11	2290959	2950084	79	-0.3694	NEUTRAL	NA	11	"ASCL2,C11orf21,CD81,CDKN1C,KCNQ1,PHLDA2,SLC22A18,SLC22A18AS,TRPM5,TSPAN32,TSSC4"
TCGA.G4.6314	11	2294536	2298258	5	-0.0422	NEUTRAL	NA	0	None
TCGA.D5.6533	11	2294679	134944769	43157	0.1301	NEUTRAL	NA	1195	Too-Many
TCGA.AA.3819	11	2298258	28960706	10420	0.0158	NEUTRAL	NA	247	Too-Many
TCGA.AG.3727	11	2301251	71550002	20899	0.0268	NEUTRAL	NA	764	Too-Many
TCGA.EF.5830	11	2310869	21617058	7913	0.0236	NEUTRAL	NA	229	Too-Many
TCGA.A6.3810.01A	11	2466320	2799160	17	-0.1762	NEUTRAL	NA	1	KCNQ1
TCGA.AA.A010.01A	11	2542667	2799160	15	0.0559	NEUTRAL	NA	1	KCNQ1
TCGA.AM.5820	11	2615599	2700160	27	0.1094	NEUTRAL	NA	1	KCNQ1
TCGA.AA.3844	11	2639711	4205955	426	0.2223	NEUTRAL	NA	19	"ART1,ART5,CARS,CDKN1C,CHRNA10,KCNQ1,MRGPRE,MRGPRG,NAP1L4,NUP98,OSBPL5,PGAP2,PHLDA2,RHOG,RRM1,SLC22A18,SLC22A18AS,STIM1,ZNF195"
TCGA.DC.6160.01A	11	2639725	2894692	16	-0.5111	NEUTRAL	NA	1	KCNQ1
TCGA.AA.3556	11	2715454	134944769	43119	0	NEUTRAL	NA	1190	Too-Many
TCGA.AA.A01R	11	2717292	134944769	43211	-0.0016	NEUTRAL	NA	1190	Too-Many
TCGA.AM.5820	11	2773943	2790162	14	0.1502	NEUTRAL	NA	1	KCNQ1
TCGA.D5.5538	11	2807521	10791982	3088	0.0021	NEUTRAL	NA	155	Too-Many
TCGA.AA.3930.01A	11	2868977	3068935	48	0.103	NEUTRAL	NA	7	"CARS,CDKN1C,KCNQ1,NAP1L4,PHLDA2,SLC22A18,SLC22A18AS"
TCGA.DC.6160.01A	11	2900195	4087383	139	-0.2465	NEUTRAL	NA	17	"ART1,ART5,CARS,CDKN1C,CHRNA10,MRGPRE,MRGPRG,NAP1L4,NUP98,OSBPL5,PGAP2,PHLDA2,RHOG,SLC22A18,SLC22A18AS,STIM1,ZNF195"
TCGA.AG.A01W.01A	11	2902770	3025518	37	-0.1903	NEUTRAL	NA	6	"CARS,CDKN1C,NAP1L4,PHLDA2,SLC22A18,SLC22A18AS"
TCGA.AG.3906.01A	11	2937825	2992621	14	0.2013	NEUTRAL	NA	3	"NAP1L4,PHLDA2,SLC22A18"
TCGA.AG.3891.01A	11	2939171	3062074	38	0.3072	NEUTRAL	NA	4	"CARS,NAP1L4,PHLDA2,SLC22A18"
TCGA.AA.A024.01A	11	2946223	134257391	8386	0.0414	NEUTRAL	NA	1187	Too-Many
TCGA.AA.3939.01A	11	2950084	134257391	9087	-0.1902	NEUTRAL	NA	1186	Too-Many
TCGA.AM.5820	11	2961211	3133173	56	0.2093	NEUTRAL	NA	3	"CARS,NAP1L4,OSBPL5"
TCGA.EI.6508	11	2961211	99460807	29831	0.008	NEUTRAL	NA	908	Too-Many
TCGA.AH.6549.01A	11	2970395	19735205	1487	-0.0408	NEUTRAL	NA	214	Too-Many
TCGA.A6.3808.01A	11	2972427	6577881	366	0.2211	NEUTRAL	NA	94	"APBB1,ARFIP2,ART1,ART5,C11orf40,C11orf42,CARS,CCKBR,CHRNA10,CNGA4,DNHD1,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,HPX,MMP26,MRGPRE,MRGPRG,NAP1L4,NUP98,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B4,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,OSBPL5,PGAP2,PRKCDBP,RHOG,RRM1,SMPD1,STIM1,TIMM10B,TRIM21,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL,ZNF195"
TCGA.CK.5914.01A	11	2975707	2999454	10	0.266	NEUTRAL	NA	1	NAP1L4
TCGA.AZ.4684.01A	11	2997207	7070854	438	0.1977	NEUTRAL	NA	111	Too-Many
TCGA.CK.5914.01A	11	3000343	3143189	40	-0.4131	NEUTRAL	NA	3	"CARS,NAP1L4,OSBPL5"
TCGA.AA.A01F.01A	11	3023136	6640385	343	-0.3601	NEUTRAL	NA	97	"APBB1,ARFIP2,ART1,ART5,C11orf40,C11orf42,CARS,CCKBR,CHRNA10,CNGA4,DNHD1,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,HPX,ILK,MMP26,MRGPRE,MRGPRG,NUP98,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B4,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,OSBPL5,PGAP2,PRKCDBP,RHOG,RRM1,RRP8,SMPD1,STIM1,TAF10,TIMM10B,TPP1,TRIM21,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL,ZNF195"
TCGA.AG.3909.01A	11	3023704	3150196	32	0.3135	NEUTRAL	NA	2	"CARS,OSBPL5"
TCGA.AG.3906.01A	11	3028050	3063353	16	0.1757	NEUTRAL	NA	1	CARS
TCGA.AA.A00N.01A	11	3028050	3150196	38	0.3095	NEUTRAL	NA	2	"CARS,OSBPL5"
TCGA.AA.3519	11	3036323	134944769	43107	-0.2176	NEUTRAL	NA	1184	Too-Many
TCGA.AA.A010.01A	11	3036946	4133083	118	0.1172	NEUTRAL	NA	13	"ART1,ART5,CARS,CHRNA10,MRGPRE,MRGPRG,NUP98,OSBPL5,PGAP2,RHOG,RRM1,STIM1,ZNF195"
TCGA.A6.3810.01A	11	3039600	6190587	260	-0.2089	NEUTRAL	NA	80	"ART1,ART5,C11orf40,CARS,CHRNA10,HBB,HBD,HBE1,HBG1,HBG2,MMP26,MRGPRE,MRGPRG,NUP98,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B4,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,OSBPL5,PGAP2,RHOG,RRM1,STIM1,TRIM21,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL,ZNF195"
TCGA.AG.A02X.01A	11	3041403	44626560	2056	-0.3058	NEUTRAL	NA	292	Too-Many
TCGA.AG.3891.01A	11	3063353	3392757	24	-0.3308	NEUTRAL	NA	5	"CARS,MRGPRE,MRGPRG,OSBPL5,ZNF195"
TCGA.AA.A01Q.01A	11	3063353	3682546	34	-0.0714	NEUTRAL	NA	7	"ART1,ART5,CARS,MRGPRE,MRGPRG,OSBPL5,ZNF195"
TCGA.AG.A01W.01A	11	3065964	3619570	32	0.2391	NEUTRAL	NA	5	"CARS,MRGPRE,MRGPRG,OSBPL5,ZNF195"
TCGA.AG.3906.01A	11	3068935	3660855	22	-0.4164	NEUTRAL	NA	6	"ART5,CARS,MRGPRE,MRGPRG,OSBPL5,ZNF195"
TCGA.AA.3930.01A	11	3109398	3394714	30	-0.2201	NEUTRAL	NA	4	"MRGPRE,MRGPRG,OSBPL5,ZNF195"
TCGA.AA.A01I.01A	11	3121340	47494603	2352	-0.105	NEUTRAL	NA	328	Too-Many
TCGA.CK.5914.01A	11	3143521	4116156	79	0.0767	NEUTRAL	NA	12	"ART1,ART5,CHRNA10,MRGPRE,MRGPRG,NUP98,OSBPL5,PGAP2,RHOG,RRM1,STIM1,ZNF195"
TCGA.AG.3909.01A	11	3249042	3690974	18	-0.407	NEUTRAL	NA	5	"ART1,ART5,CHRNA10,MRGPRE,ZNF195"
TCGA.AA.3861.01A	11	3249042	4673750	117	-0.1988	NEUTRAL	NA	21	"ART1,ART5,C11orf40,CHRNA10,MRGPRE,NUP98,OR51D1,OR51E1,OR52B4,OR52I1,OR52I2,OR52K1,OR52K2,OR52M1,PGAP2,RHOG,RRM1,STIM1,TRIM21,TRIM68,ZNF195"
TCGA.AM.5820	11	3257510	5598242	1012	0.033	NEUTRAL	NA	55	"ART1,ART5,C11orf40,CHRNA10,HBB,HBD,HBE1,HBG1,HBG2,MMP26,NUP98,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52D1,OR52E2,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,PGAP2,RHOG,RRM1,STIM1,TRIM21,TRIM68,UBQLN3,UBQLNL,ZNF195"
TCGA.AA.3930.01A	11	3398769	4154743	82	0.1725	NEUTRAL	NA	9	"ART1,ART5,CHRNA10,NUP98,PGAP2,RHOG,RRM1,STIM1,ZNF195"
TCGA.NH.A6GB	11	3446078	80249732	23080	-0.0328	NEUTRAL	NA	831	Too-Many
TCGA.AG.A01W.01A	11	3636976	4106823	74	-0.1755	NEUTRAL	NA	7	"ART1,ART5,CHRNA10,NUP98,PGAP2,RHOG,STIM1"
TCGA.AG.3891.01A	11	3659898	4159373	77	0.1328	NEUTRAL	NA	8	"ART1,ART5,CHRNA10,NUP98,PGAP2,RHOG,RRM1,STIM1"
TCGA.AA.A00D.01A	11	3659898	6704326	317	-0.0535	NEUTRAL	NA	94	"APBB1,ARFIP2,ART1,ART5,C11orf40,C11orf42,CCKBR,CHRNA10,CNGA4,DCHS1,DNHD1,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,HPX,ILK,MMP26,MRPL17,NUP98,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B4,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,PGAP2,PRKCDBP,RHOG,RRM1,RRP8,SMPD1,STIM1,TAF10,TIMM10B,TPP1,TRIM21,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.AA.A00Q.01A	11	3659898	9192126	529	-0.0745	NEUTRAL	NA	131	Too-Many
TCGA.AA.A00L.01A	11	3660855	3687285	7	-0.4149	NEUTRAL	NA	3	"ART1,ART5,CHRNA10"
TCGA.AG.3906.01A	11	3680394	4139503	64	0.1647	NEUTRAL	NA	7	"ART1,CHRNA10,NUP98,PGAP2,RHOG,RRM1,STIM1"
TCGA.AA.A02K.01A	11	3680400	3700747	11	0.3286	NEUTRAL	NA	3	"ART1,CHRNA10,NUP98"
TCGA.AA.3862.01A	11	3680825	4673750	102	-0.0517	NEUTRAL	NA	18	"ART1,C11orf40,CHRNA10,NUP98,OR51D1,OR51E1,OR52B4,OR52I1,OR52I2,OR52K1,OR52K2,OR52M1,PGAP2,RHOG,RRM1,STIM1,TRIM21,TRIM68"
TCGA.AA.A01Q.01A	11	3685285	4045064	45	0.2935	NEUTRAL	NA	6	"ART1,CHRNA10,NUP98,PGAP2,RHOG,STIM1"
TCGA.AA.A00L.01A	11	3688442	4147867	65	0.101	NEUTRAL	NA	6	"CHRNA10,NUP98,PGAP2,RHOG,RRM1,STIM1"
TCGA.AG.3909.01A	11	3692416	3800106	30	0.3029	NEUTRAL	NA	2	"CHRNA10,NUP98"
TCGA.AA.A02K.01A	11	3704390	10631245	729	-0.1987	NEUTRAL	NA	140	Too-Many
TCGA.AA.A02E.01A	11	3712530	18487134	1152	-0.1667	NEUTRAL	NA	193	Too-Many
TCGA.AG.3909.01A	11	3803222	3846511	6	-0.2475	NEUTRAL	NA	2	"NUP98,PGAP2"
TCGA.AG.3611.01A	11	3803222	16362540	835	0.1457	NEUTRAL	NA	167	Too-Many
TCGA.DM.A1D6	11	3809348	50751357	16653	0.189	NEUTRAL	NA	343	Too-Many
TCGA.AA.3530	11	3997139	51563635	16595	0.0061	NEUTRAL	NA	342	Too-Many
TCGA.DC.6160.01A	11	4089326	4747703	44	0.1416	NEUTRAL	NA	14	"C11orf40,OR51D1,OR51E1,OR51E2,OR52B4,OR52I1,OR52I2,OR52K1,OR52K2,OR52M1,RRM1,STIM1,TRIM21,TRIM68"
TCGA.CK.5914.01A	11	4123168	4148235	13	-0.3514	NEUTRAL	NA	1	RRM1
TCGA.AA.A01Q.01A	11	4123168	4150246	14	0.1588	NEUTRAL	NA	1	RRM1
TCGA.AG.3909.01A	11	4123168	4150246	14	-0.266	NEUTRAL	NA	1	RRM1
TCGA.AA.A00L.01A	11	4148235	5624819	92	-0.2056	NEUTRAL	NA	50	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52B6,OR52D1,OR52E2,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,RRM1,TRIM21,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.AA.A01Q.01A	11	4153464	4159373	4	-0.4993	NEUTRAL	NA	1	RRM1
TCGA.AG.A01L.01A	11	4153464	4388544	5	0.377	NEUTRAL	NA	2	"OR52B4,RRM1"
TCGA.AA.3930.01A	11	4156274	4566389	12	-0.2696	NEUTRAL	NA	5	"OR52B4,OR52K1,OR52K2,RRM1,TRIM21"
TCGA.AA.A010.01A	11	4156274	5719504	116	0.1555	NEUTRAL	NA	53	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52B6,OR52D1,OR52E2,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,RRM1,TRIM21,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.A6.5665	11	4162476	60559804	18056	0.0658	NEUTRAL	NA	463	Too-Many
TCGA.AA.3844	11	4206338	4406284	31	-0.1699	NEUTRAL	NA	2	"OR52B4,TRIM21"
TCGA.AA.3982	11	4236708	4978381	367	0.0629	NEUTRAL	NA	22	"C11orf40,OR51A2,OR51A4,OR51A7,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51S1,OR51T1,OR52B4,OR52I1,OR52I2,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM68"
TCGA.AA.3850	11	4238405	5520974	693	-0.36445	NEUTRAL	NA	43	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52D1,OR52E2,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM68"
TCGA.AG.A01W.01A	11	4363052	5574622	80	0.1049	NEUTRAL	NA	46	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52D1,OR52E2,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM68,UBQLN3,UBQLNL"
TCGA.AG.4009.01A	11	4388544	5079871	47	0.0288	NEUTRAL	NA	25	"C11orf40,MMP26,OR51A2,OR51A4,OR51A7,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51L1,OR51S1,OR51T1,OR52B4,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM68"
TCGA.CK.5914.01A	11	4388544	5565743	88	0.2919	NEUTRAL	NA	45	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52D1,OR52E2,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM68,UBQLN3,UBQLNL"
TCGA.AG.3906.01A	11	4388544	5618080	89	-0.1985	NEUTRAL	NA	49	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52B6,OR52D1,OR52E2,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.AA.A01Q.01A	11	4388544	6047931	119	0.1847	NEUTRAL	NA	65	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,TRIM21,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.AG.3891.01A	11	4388544	6592859	219	-0.2491	NEUTRAL	NA	80	"APBB1,ARFIP2,C11orf40,C11orf42,CCKBR,CNGA4,DNHD1,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,HPX,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B4,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,PRKCDBP,SMPD1,TIMM10B,TRIM21,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.AG.A00C.01A	11	4406488	6240140	142	-0.1953	NEUTRAL	NA	69	"C11orf40,C11orf42,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,TRIM21,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.AG.A01L.01A	11	4406488	6486748	185	-0.2159	NEUTRAL	NA	76	"APBB1,C11orf40,C11orf42,CCKBR,CNGA4,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,HPX,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,PRKCDBP,SMPD1,TRIM21,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.AA.3844	11	4407724	4418200	8	0.277	NEUTRAL	NA	1	TRIM21
TCGA.AG.A016.01A	11	4409488	6341311	154	-0.4859	NEUTRAL	NA	72	"C11orf40,C11orf42,CCKBR,CNGA4,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,PRKCDBP,TRIM21,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.AA.3844	11	4430862	6219619	986	-0.2643	NEUTRAL	NA	65	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.A6.2672	11	4452823	60559804	17950	0.0328	NEUTRAL	NA	461	Too-Many
TCGA.AA.A00F.01A	11	4470590	6240140	128	0.0623	NEUTRAL	NA	68	"C11orf40,C11orf42,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52L1,OR52M1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,TRIM68,UBQLN3,UBQLNL"
TCGA.CI.6624	11	4472615	67426796	19210	-0.0696	NEUTRAL	NA	698	Too-Many
TCGA.AA.3930.01A	11	4592625	4608028	5	0.264	NEUTRAL	NA	2	"C11orf40,OR52I2"
TCGA.A6.3807	11	4605194	8779171	1913	-0.3415	NEUTRAL	NA	110	Too-Many
TCGA.AA.3930.01A	11	4615227	5602075	73	-0.2219	NEUTRAL	NA	39	"HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52D1,OR52E2,OR52H1,OR52I1,OR52J3,OR52R1,TRIM68,UBQLN3,UBQLNL"
TCGA.AG.A011.01A	11	4903007	10783443	587	0.0472	NEUTRAL	NA	120	Too-Many
TCGA.AA.3848	11	4925810	134944769	42509	0.1166	NEUTRAL	NA	1154	Too-Many
TCGA.AA.3982	11	5019984	5462084	243	-0.053	NEUTRAL	NA	18	"HBB,HBD,HBE1,HBG1,HBG2,OR51B2,OR51B4,OR51B5,OR51B6,OR51I1,OR51L1,OR51M1,OR51Q1,OR51V1,OR52A1,OR52A5,OR52E2,OR52J3"
TCGA.AG.3909.01A	11	5141866	5173144	4	-0.4962	NEUTRAL	NA	2	"OR52A1,OR52A5"
TCGA.AG.4009.01A	11	5220958	6486748	136	-0.1067	NEUTRAL	NA	49	"APBB1,C11orf42,CCKBR,CNGA4,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,HPX,OR51B2,OR51B4,OR51B5,OR51B6,OR51I1,OR51I2,OR51M1,OR51Q1,OR51V1,OR52B2,OR52B6,OR52D1,OR52E4,OR52E6,OR52E8,OR52H1,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,PRKCDBP,SMPD1,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,UBQLN3,UBQLNL"
TCGA.AA.3982	11	5465234	5533838	68	-0.1569	NEUTRAL	NA	4	"OR51B5,OR51I2,OR52D1,UBQLN3"
TCGA.A6.5661	11	5468901	43955080	14383	0.0158	NEUTRAL	NA	233	Too-Many
TCGA.AA.3850	11	5522174	5569451	40	0.11105	NEUTRAL	NA	4	"OR51B5,OR52H1,UBQLN3,UBQLNL"
TCGA.AA.3982	11	5534113	5570042	35	0.28	NEUTRAL	NA	2	"OR52H1,UBQLNL"
TCGA.AY.6196	11	5540465	7418891	793	0.2525	NEUTRAL	NA	54	"APBB1,ARFIP2,C11orf42,CCKBR,CNGA4,DCHS1,DNHD1,FAM160A2,HPX,ILK,MRPL17,NLRP14,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR52B2,OR52B6,OR52E4,OR52E6,OR52E8,OR52H1,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,OR6A2,PRKCDBP,RBMXL2,RRP8,SMPD1,SYT9,TAF10,TIMM10B,TPP1,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,ZNF214,ZNF215"
TCGA.AA.3850	11	5578583	5748886	80	0.29355	NEUTRAL	NA	6	"OR52B6,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.AA.3982	11	5579724	5748987	80	0.3595	NEUTRAL	NA	6	"OR52B6,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.AM.5820	11	5599181	5745636	65	-0.23	NEUTRAL	NA	6	"OR52B6,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.AA.3941	11	5599181	5748886	70	-0.0165	NEUTRAL	NA	6	"OR52B6,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.AA.A00N.01A	11	5602075	5729744	30	-0.275	NEUTRAL	NA	6	"OR52B6,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.CK.5914.01A	11	5602075	5730241	31	-0.4377	NEUTRAL	NA	6	"OR52B6,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.AG.3909.01A	11	5602075	6244843	60	0.124	NEUTRAL	NA	24	"C11orf42,FAM160A2,OR52B2,OR52B6,OR52E4,OR52E6,OR52E8,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,TRIM22,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.AA.3930.01A	11	5618080	20112370	1278	0.0531	NEUTRAL	NA	153	Too-Many
TCGA.AG.3906.01A	11	5624453	5688834	19	0.1531	NEUTRAL	NA	4	"TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.AG.A01W.01A	11	5656013	6177034	30	0.1941	NEUTRAL	NA	18	"OR52E4,OR52E6,OR52E8,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,TRIM22,TRIM34,TRIM5,TRIM6-TRIM34"
TCGA.AA.A00L.01A	11	5663960	9228180	362	-0.0403	NEUTRAL	NA	75	"AKIP1,APBB1,ARFIP2,ASCL3,C11orf16,C11orf42,CCKBR,CNGA4,CYB5R2,DCHS1,DENND5A,DNHD1,EIF3F,FAM160A2,HPX,ILK,LMO1,MRPL17,NLRP10,NLRP14,NRIP3,OLFML1,OR10A2,OR10A3,OR10A4,OR10A5,OR10A6,OR2AG1,OR2AG2,OR2D2,OR2D3,OR52B2,OR52E4,OR52E6,OR52E8,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,OR5P2,OR5P3,OR6A2,OVCH2,PPFIBP2,PRKCDBP,RBMXL2,RIC3,RPL27A,RRP8,SCUBE2,SMPD1,ST5,STK33,SYT9,TAF10,TIMM10B,TMEM9B,TPP1,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6-TRIM34,TRIM66,TUB,ZNF214,ZNF215"
TCGA.AG.A015.01A	11	5688834	6047931	24	-0.397	NEUTRAL	NA	15	"OR52E4,OR52E6,OR52E8,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,TRIM22,TRIM5"
TCGA.AG.3906.01A	11	5699392	6417054	58	-0.1639	NEUTRAL	NA	25	"APBB1,C11orf42,CCKBR,CNGA4,FAM160A2,OR52B2,OR52E4,OR52E6,OR52E8,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,PRKCDBP,SMPD1,TRIM22,TRIM5"
TCGA.AA.A010.01A	11	5727748	6190587	19	-0.4797	NEUTRAL	NA	16	"OR52B2,OR52E4,OR52E6,OR52E8,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,TRIM22"
TCGA.AM.5820	11	5746477	17401518	4534	0.0989	NEUTRAL	NA	116	Too-Many
TCGA.AA.3850	11	5748987	5766662	8	-0.23305	NEUTRAL	NA	1	OR56B1
TCGA.AA.3982	11	5754394	6215570	187	-0.113	NEUTRAL	NA	15	"OR52B2,OR52E4,OR52E6,OR52E8,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4"
TCGA.AA.3989	11	5765687	12843877	3048	0.295	NEUTRAL	NA	93	"ADM,AKIP1,AMPD3,APBB1,ARFIP2,ASCL3,C11orf16,C11orf42,CCKBR,CNGA4,CSNK2A3,CTR9,CYB5R2,DCHS1,DENND5A,DKK3,DNHD1,EIF3F,EIF4G2,FAM160A2,GALNT18,HPX,ILK,IPO7,LMO1,LYVE1,MICAL2,MICALCL,MRPL17,MRVI1,MTRNR2L8,NLRP10,NLRP14,NRIP3,OLFML1,OR10A2,OR10A3,OR10A4,OR10A5,OR10A6,OR2AG1,OR2AG2,OR2D2,OR2D3,OR52B2,OR52E4,OR52E6,OR52E8,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B4,OR5P2,OR5P3,OR6A2,OVCH2,PARVA,PPFIBP2,PRKCDBP,RBMXL2,RIC3,RNF141,RPL27A,RRP8,SBF2,SCUBE2,SMPD1,ST5,STK33,SWAP70,SYT9,TAF10,TEAD1,TIMM10B,TMEM41B,TMEM9B,TPP1,TRIM3,TRIM66,TUB,USP47,WEE1,ZBED5,ZNF143,ZNF214,ZNF215"
TCGA.AA.3850	11	5816231	5866332	29	-0.07675	NEUTRAL	NA	2	"OR52E6,OR52N2"
TCGA.AA.3941	11	5922221	6897250	419	-0.3147	NEUTRAL	NA	31	"APBB1,ARFIP2,C11orf42,CCKBR,CNGA4,DCHS1,DNHD1,FAM160A2,HPX,ILK,MRPL17,OR10A2,OR10A5,OR2AG1,OR2AG2,OR52B2,OR52L1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B4,OR6A2,PRKCDBP,RRP8,SMPD1,TAF10,TIMM10B,TPP1,TRIM3"
TCGA.AA.3850	11	5922499	6897250	419	0.10975	NEUTRAL	NA	31	"APBB1,ARFIP2,C11orf42,CCKBR,CNGA4,DCHS1,DNHD1,FAM160A2,HPX,ILK,MRPL17,OR10A2,OR10A5,OR2AG1,OR2AG2,OR52B2,OR52L1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B4,OR6A2,PRKCDBP,RRP8,SMPD1,TAF10,TIMM10B,TPP1,TRIM3"
TCGA.G4.6322	11	5934043	6004072	21	-0.5108	NEUTRAL	NA	2	"OR56A3,OR56A5"
TCGA.CK.5914.01A	11	5968560	6023252	4	-0.4618	NEUTRAL	NA	3	"OR52L1,OR56A3,OR56A5"
TCGA.G4.6322	11	6006887	26592360	8336	-0.0028	NEUTRAL	NA	152	Too-Many
TCGA.CK.5914.01A	11	6047931	6240140	13	0.3353	NEUTRAL	NA	6	"C11orf42,FAM160A2,OR52B2,OR52W1,OR56A1,OR56B4"
TCGA.AG.A015.01A	11	6128957	6226785	4	0.1027	NEUTRAL	NA	3	"OR52B2,OR52W1,OR56B4"
TCGA.AG.A01W.01A	11	6183382	6202136	13	-0.4009	NEUTRAL	NA	1	OR52B2
TCGA.AG.A01W.01A	11	6216944	6297880	13	0.0668	NEUTRAL	NA	5	"C11orf42,CCKBR,CNGA4,FAM160A2,OR52W1"
TCGA.AA.3982	11	6219514	6773438	211	0.3354	NEUTRAL	NA	19	"APBB1,ARFIP2,C11orf42,CCKBR,CNGA4,DCHS1,DNHD1,FAM160A2,HPX,ILK,MRPL17,OR52W1,PRKCDBP,RRP8,SMPD1,TAF10,TIMM10B,TPP1,TRIM3"
TCGA.A6.3810.01A	11	6220474	6260381	15	0.1058	NEUTRAL	NA	4	"C11orf42,CNGA4,FAM160A2,OR52W1"
TCGA.AA.3844	11	6221213	6735018	189	0.081	NEUTRAL	NA	19	"APBB1,ARFIP2,C11orf42,CCKBR,CNGA4,DCHS1,DNHD1,FAM160A2,HPX,ILK,MRPL17,OR52W1,PRKCDBP,RRP8,SMPD1,TAF10,TIMM10B,TPP1,TRIM3"
TCGA.AA.A010.01A	11	6243622	6265220	9	0.1044	NEUTRAL	NA	2	"CNGA4,FAM160A2"
TCGA.AA.A01Q.01A	11	6243622	6281107	10	0.0586	NEUTRAL	NA	3	"CCKBR,CNGA4,FAM160A2"
TCGA.AG.A00C.01A	11	6243622	6501511	53	0.2078	NEUTRAL	NA	9	"APBB1,ARFIP2,CCKBR,CNGA4,FAM160A2,HPX,PRKCDBP,SMPD1,TRIM3"
TCGA.CK.5914.01A	11	6243622	6503225	56	-0.3566	NEUTRAL	NA	10	"APBB1,ARFIP2,CCKBR,CNGA4,FAM160A2,HPX,PRKCDBP,SMPD1,TIMM10B,TRIM3"
TCGA.A6.3810.01A	11	6260866	31804921	1528	-0.1938	NEUTRAL	NA	162	Too-Many
TCGA.G4.6314	11	6383719	8385650	893	0.0641	NEUTRAL	NA	39	"APBB1,ARFIP2,CYB5R2,DCHS1,DNHD1,EIF3F,HPX,ILK,LMO1,MRPL17,NLRP10,NLRP14,OLFML1,OR10A2,OR10A3,OR10A4,OR10A5,OR10A6,OR2AG1,OR2AG2,OR2D2,OR2D3,OR5P2,OR5P3,OR6A2,OVCH2,PPFIBP2,RBMXL2,RIC3,RRP8,SMPD1,SYT9,TAF10,TIMM10B,TPP1,TRIM3,TUB,ZNF214,ZNF215"
TCGA.AG.A016.01A	11	6411787	6415079	5	0.2605	NEUTRAL	NA	1	SMPD1
TCGA.AG.A015.01A	11	6411787	6422184	8	0.0782	NEUTRAL	NA	2	"APBB1,SMPD1"
TCGA.AA.A01Q.01A	11	6411787	6502958	39	-0.2689	NEUTRAL	NA	6	"APBB1,ARFIP2,HPX,SMPD1,TIMM10B,TRIM3"
TCGA.AA.A010.01A	11	6412577	6416727	5	0.0625	NEUTRAL	NA	2	"APBB1,SMPD1"
TCGA.AG.A016.01A	11	6416727	6486748	25	-0.4197	NEUTRAL	NA	3	"APBB1,HPX,TRIM3"
TCGA.AG.3906.01A	11	6422184	6523955	35	0.2502	NEUTRAL	NA	6	"APBB1,ARFIP2,DNHD1,HPX,TIMM10B,TRIM3"
TCGA.AG.3909.01A	11	6431840	6472450	13	-0.3123	NEUTRAL	NA	3	"APBB1,HPX,TRIM3"
TCGA.AG.A01W.01A	11	6433838	6443325	6	-0.1786	NEUTRAL	NA	1	APBB1
TCGA.AG.A01W.01A	11	6458100	6511539	12	0.1877	NEUTRAL	NA	4	"ARFIP2,HPX,TIMM10B,TRIM3"
TCGA.AG.A01L.01A	11	6498296	6532454	14	0.226	NEUTRAL	NA	3	"ARFIP2,DNHD1,TIMM10B"
TCGA.AG.A015.01A	11	6498296	6541168	16	-0.0011	NEUTRAL	NA	3	"ARFIP2,DNHD1,TIMM10B"
TCGA.AG.A016.01A	11	6498296	134257391	7844	-0.1233	NEUTRAL	NA	1094	Too-Many
TCGA.AG.A00C.01A	11	6502668	6541168	9	-0.1384	NEUTRAL	NA	3	"ARFIP2,DNHD1,TIMM10B"
TCGA.AA.A01Q.01A	11	6503225	6629239	28	0.289	NEUTRAL	NA	4	"DNHD1,ILK,RRP8,TIMM10B"
TCGA.AG.A01W.01A	11	6516162	6589430	36	-0.18	NEUTRAL	NA	1	DNHD1
TCGA.AA.A010.01A	11	6519408	6554923	9	-0.1857	NEUTRAL	NA	1	DNHD1
TCGA.AG.3909.01A	11	6519408	6584962	12	0.3392	NEUTRAL	NA	1	DNHD1
TCGA.AG.4009.01A	11	6519408	6592859	16	0.043	NEUTRAL	NA	1	DNHD1
TCGA.AG.3906.01A	11	6530080	6592859	19	-0.2487	NEUTRAL	NA	1	DNHD1
TCGA.AG.A01L.01A	11	6540778	6632904	24	-0.1886	NEUTRAL	NA	4	"DNHD1,ILK,RRP8,TAF10"
TCGA.AG.A015.01A	11	6587768	6640385	28	-0.1147	NEUTRAL	NA	5	"DNHD1,ILK,RRP8,TAF10,TPP1"
TCGA.AG.A01W.01A	11	6592317	6596942	10	0.1849	NEUTRAL	NA	1	DNHD1
TCGA.AG.A01W.01A	11	6611645	7627288	70	0.1166	NEUTRAL	NA	21	"DCHS1,ILK,MRPL17,NLRP14,OLFML1,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR6A2,PPFIBP2,RBMXL2,RRP8,SYT9,TAF10,TPP1,ZNF214,ZNF215"
TCGA.AG.3891.01A	11	6621364	6655038	34	0.1809	NEUTRAL	NA	5	"DCHS1,ILK,RRP8,TAF10,TPP1"
TCGA.AG.A01L.01A	11	6635740	6640385	10	0.2776	NEUTRAL	NA	1	TPP1
TCGA.AG.A00C.01A	11	6640385	6652296	10	0.0046	NEUTRAL	NA	2	"DCHS1,TPP1"
TCGA.AA.A01F.01A	11	6643005	6654591	12	0.1436	NEUTRAL	NA	1	DCHS1
TCGA.AG.A00C.01A	11	6652847	6655038	4	0.3475	NEUTRAL	NA	1	DCHS1
TCGA.AG.A015.01A	11	6652847	7631471	53	-0.2271	NEUTRAL	NA	17	"DCHS1,MRPL17,NLRP14,OLFML1,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR6A2,PPFIBP2,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.A6.3808.01A	11	6653360	9228180	252	0.2943	NEUTRAL	NA	39	"AKIP1,ASCL3,C11orf16,CYB5R2,DCHS1,DENND5A,EIF3F,LMO1,MRPL17,NLRP10,NLRP14,NRIP3,OLFML1,OR10A2,OR10A3,OR10A4,OR10A5,OR10A6,OR2AG1,OR2AG2,OR2D2,OR2D3,OR5P2,OR5P3,OR6A2,OVCH2,PPFIBP2,RBMXL2,RIC3,RPL27A,SCUBE2,ST5,STK33,SYT9,TMEM9B,TRIM66,TUB,ZNF214,ZNF215"
TCGA.AA.A01F.01A	11	6655038	45893591	1555	-0.3403	NEUTRAL	NA	202	Too-Many
TCGA.AA.A01Q.01A	11	6661040	6897830	13	0.3681	NEUTRAL	NA	7	"DCHS1,MRPL17,OR10A2,OR10A5,OR2AG1,OR2AG2,OR6A2"
TCGA.AG.3909.01A	11	6661040	7631471	49	0.3653	NEUTRAL	NA	17	"DCHS1,MRPL17,NLRP14,OLFML1,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR6A2,PPFIBP2,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.AG.A00C.01A	11	6661040	8008908	97	-0.1315	NEUTRAL	NA	25	"CYB5R2,DCHS1,EIF3F,MRPL17,NLRP10,NLRP14,OLFML1,OR10A2,OR10A3,OR10A4,OR10A5,OR10A6,OR2AG1,OR2AG2,OR2D2,OR2D3,OR5P2,OR5P3,OR6A2,OVCH2,PPFIBP2,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.AG.3891.01A	11	6661040	8496178	138	-0.1602	NEUTRAL	NA	29	"CYB5R2,DCHS1,EIF3F,LMO1,MRPL17,NLRP10,NLRP14,OLFML1,OR10A2,OR10A3,OR10A4,OR10A5,OR10A6,OR2AG1,OR2AG2,OR2D2,OR2D3,OR5P2,OR5P3,OR6A2,OVCH2,PPFIBP2,RBMXL2,RIC3,STK33,SYT9,TUB,ZNF214,ZNF215"
TCGA.AF.3914.01A	11	6661040	31804921	1299	0.0233	NEUTRAL	NA	148	Too-Many
TCGA.AG.A01L.01A	11	6661040	65172298	3493	-0.1292	NEUTRAL	NA	527	Too-Many
TCGA.CK.5914.01A	11	6661851	6703936	3	-0.2454	NEUTRAL	NA	2	"DCHS1,MRPL17"
TCGA.AF.A56K	11	6663205	37078719	11645	-0.0049	NEUTRAL	NA	184	Too-Many
TCGA.AA.A010.01A	11	6703319	6942186	13	-0.1974	NEUTRAL	NA	8	"MRPL17,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR6A2"
TCGA.AA.A00F.01A	11	6703319	7669586	60	0.0425	NEUTRAL	NA	16	"MRPL17,NLRP14,OLFML1,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR6A2,PPFIBP2,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.AG.3906.01A	11	6703319	8732621	156	-0.059	NEUTRAL	NA	31	"CYB5R2,EIF3F,LMO1,MRPL17,NLRP10,NLRP14,OLFML1,OR10A2,OR10A3,OR10A4,OR10A5,OR10A6,OR2AG1,OR2AG2,OR2D2,OR2D3,OR5P2,OR5P3,OR6A2,OVCH2,PPFIBP2,RBMXL2,RIC3,RPL27A,ST5,STK33,SYT9,TRIM66,TUB,ZNF214,ZNF215"
TCGA.AG.4009.01A	11	6703319	8977708	171	-0.0435	NEUTRAL	NA	35	"AKIP1,ASCL3,C11orf16,CYB5R2,EIF3F,LMO1,MRPL17,NLRP10,NLRP14,OLFML1,OR10A2,OR10A3,OR10A4,OR10A5,OR10A6,OR2AG1,OR2AG2,OR2D2,OR2D3,OR5P2,OR5P3,OR6A2,OVCH2,PPFIBP2,RBMXL2,RIC3,RPL27A,ST5,STK33,SYT9,TMEM9B,TRIM66,TUB,ZNF214,ZNF215"
TCGA.AA.3844	11	6736744	7419149	309	-0.3311	NEUTRAL	NA	13	"NLRP14,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR6A2,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.AA.3982	11	6783012	6809253	18	0.166	NEUTRAL	NA	2	"OR2AG1,OR2AG2"
TCGA.AA.3982	11	6823712	6897250	56	0.3201	NEUTRAL	NA	2	"OR10A2,OR10A5"
TCGA.AG.3898	11	6888861	6933800	37	-0.4706	NEUTRAL	NA	3	"OR10A2,OR10A4,OR2D2"
TCGA.AA.3982	11	6901512	7403022	184	-0.256	NEUTRAL	NA	7	"NLRP14,OR2D2,OR2D3,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.AA.A01Q.01A	11	6912828	7618744	36	0.0715	NEUTRAL	NA	9	"NLRP14,OLFML1,OR2D2,OR2D3,PPFIBP2,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.AA.A00D.01A	11	6912828	9228180	203	-0.0568	NEUTRAL	NA	31	"AKIP1,ASCL3,C11orf16,CYB5R2,DENND5A,EIF3F,LMO1,NLRP10,NLRP14,NRIP3,OLFML1,OR10A3,OR10A6,OR2D2,OR2D3,OR5P2,OR5P3,OVCH2,PPFIBP2,RBMXL2,RIC3,RPL27A,SCUBE2,ST5,STK33,SYT9,TMEM9B,TRIM66,TUB,ZNF214,ZNF215"
TCGA.AG.3898	11	6934001	74746552	19597	0.0128	NEUTRAL	NA	690	Too-Many
TCGA.CK.5914.01A	11	6942186	7083527	18	0.0761	NEUTRAL	NA	4	"NLRP14,OR2D3,ZNF214,ZNF215"
TCGA.AA.A010.01A	11	7021066	7081073	11	-0.3817	NEUTRAL	NA	2	"NLRP14,ZNF214"
TCGA.AA.3509.01A	11	7059771	7078877	7	0.1739	NEUTRAL	NA	1	NLRP14
TCGA.AA.3862.01A	11	7070854	32623777	1400	-0.1419	NEUTRAL	NA	141	Too-Many
TCGA.AA.3861.01A	11	7078877	32623777	1400	-0.1666	NEUTRAL	NA	141	Too-Many
TCGA.AZ.4684.01A	11	7091510	9228180	217	0.1498	NEUTRAL	NA	27	"AKIP1,ASCL3,C11orf16,CYB5R2,DENND5A,EIF3F,LMO1,NLRP10,NLRP14,NRIP3,OLFML1,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,PPFIBP2,RBMXL2,RIC3,RPL27A,SCUBE2,ST5,STK33,SYT9,TMEM9B,TRIM66,TUB"
TCGA.AA.3509.01A	11	7092364	9286457	217	0.0101	NEUTRAL	NA	27	"AKIP1,ASCL3,C11orf16,CYB5R2,DENND5A,EIF3F,LMO1,NLRP10,NLRP14,NRIP3,OLFML1,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,PPFIBP2,RBMXL2,RIC3,RPL27A,SCUBE2,ST5,STK33,SYT9,TMEM9B,TRIM66,TUB"
TCGA.DY.A1DC	11	7100692	24498249	7011	0.0039	NEUTRAL	NA	114	Too-Many
TCGA.CK.5914.01A	11	7255952	7669586	28	0.226	NEUTRAL	NA	3	"OLFML1,PPFIBP2,SYT9"
TCGA.AA.A010.01A	11	7255952	7693931	41	0.3178	NEUTRAL	NA	4	"CYB5R2,OLFML1,PPFIBP2,SYT9"
TCGA.AA.3982	11	7403206	7784541	203	0.2456	NEUTRAL	NA	5	"CYB5R2,OLFML1,OVCH2,PPFIBP2,SYT9"
TCGA.AA.3850	11	7418465	9865855	861	0.28245	NEUTRAL	NA	31	"AKIP1,ASCL3,C11orf16,CYB5R2,DENND5A,EIF3F,IPO7,LMO1,NLRP10,NRIP3,OLFML1,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,PPFIBP2,RIC3,RPL27A,SBF2,SCUBE2,ST5,STK33,SWAP70,SYT9,TMEM41B,TMEM9B,TRIM66,TUB,WEE1,ZNF143"
TCGA.AA.3941	11	7418465	15829042	3449	-0.2436	NEUTRAL	NA	63	"ADM,AKIP1,AMPD3,ARNTL,ASCL3,BTBD10,C11orf16,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYB5R2,CYP2R1,DENND5A,DKK3,EIF3F,EIF4G2,FAR1,GALNT18,INSC,IPO7,LMO1,LOC102724957,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,NLRP10,NRIP3,OLFML1,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,PARVA,PDE3B,PPFIBP2,PSMA1,PTH,RASSF10,RIC3,RNF141,RPL27A,RRAS2,SBF2,SCUBE2,SPON1,ST5,STK33,SWAP70,SYT9,TEAD1,TMEM41B,TMEM9B,TRIM66,TUB,USP47,WEE1,ZBED5,ZNF143"
TCGA.AY.6196	11	7418934	134944769	40858	-0.0686	NEUTRAL	NA	1073	Too-Many
TCGA.AA.3844	11	7419376	13927331	2884	0.0279	NEUTRAL	NA	53	"ADM,AKIP1,AMPD3,ARNTL,ASCL3,BTBD10,C11orf16,CSNK2A3,CTR9,CYB5R2,DENND5A,DKK3,EIF3F,EIF4G2,FAR1,GALNT18,IPO7,LMO1,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,NLRP10,NRIP3,OLFML1,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,PARVA,PPFIBP2,PTH,RASSF10,RIC3,RNF141,RPL27A,SBF2,SCUBE2,ST5,STK33,SWAP70,SYT9,TEAD1,TMEM41B,TMEM9B,TRIM66,TUB,USP47,WEE1,ZBED5,ZNF143"
TCGA.AA.A01Q.01A	11	7631471	7693931	27	-0.3943	NEUTRAL	NA	2	"CYB5R2,PPFIBP2"
TCGA.AG.A015.01A	11	7642113	7655668	7	0.3673	NEUTRAL	NA	1	PPFIBP2
TCGA.AG.3909.01A	11	7642113	7669586	12	-0.1354	NEUTRAL	NA	1	PPFIBP2
TCGA.AG.A015.01A	11	7656704	7670711	8	-0.2729	NEUTRAL	NA	1	PPFIBP2
TCGA.AG.A008.01A	11	7662663	9598642	211	-0.2207	NEUTRAL	NA	27	"AKIP1,ASCL3,C11orf16,CYB5R2,DENND5A,EIF3F,IPO7,LMO1,NLRP10,NRIP3,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,PPFIBP2,RIC3,RPL27A,SCUBE2,ST5,STK33,TMEM41B,TMEM9B,TRIM66,TUB,WEE1,ZNF143"
TCGA.AG.A01W.01A	11	7668970	8418742	58	-0.1291	NEUTRAL	NA	13	"CYB5R2,EIF3F,LMO1,NLRP10,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,PPFIBP2,RIC3,STK33,TUB"
TCGA.AG.3909.01A	11	7669984	7672853	5	-0.4424	NEUTRAL	NA	1	PPFIBP2
TCGA.AG.A015.01A	11	7672022	7693931	11	0.2097	NEUTRAL	NA	2	"CYB5R2,PPFIBP2"
TCGA.AA.A00F.01A	11	7693931	8933000	79	0.1787	NEUTRAL	NA	16	"AKIP1,CYB5R2,EIF3F,LMO1,NLRP10,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,RIC3,RPL27A,ST5,STK33,TRIM66,TUB"
TCGA.AA.A010.01A	11	7712416	7960123	19	-0.3927	NEUTRAL	NA	5	"OR10A3,OR10A6,OR5P2,OR5P3,OVCH2"
TCGA.AG.A015.01A	11	7712416	10521585	263	-0.1834	NEUTRAL	NA	29	"ADM,AKIP1,AMPD3,ASCL3,C11orf16,DENND5A,EIF3F,IPO7,LMO1,NLRP10,NRIP3,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2,RIC3,RPL27A,SBF2,SCUBE2,ST5,STK33,SWAP70,TMEM41B,TMEM9B,TRIM66,TUB,WEE1,ZNF143"
TCGA.AA.A029.01A	11	7716242	47204005	1816	-0.1871	NEUTRAL	NA	204	Too-Many
TCGA.AA.A01Q.01A	11	7722864	8008908	9	0.3528	NEUTRAL	NA	7	"EIF3F,NLRP10,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2"
TCGA.AA.3982	11	7801711	7948207	43	0.1684	NEUTRAL	NA	2	"OR5P2,OR5P3"
TCGA.AG.A01Y	11	7892796	15832616	3238	-0.0124	NEUTRAL	NA	56	"ADM,AKIP1,AMPD3,ARNTL,ASCL3,BTBD10,C11orf16,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYP2R1,DENND5A,DKK3,EIF3F,EIF4G2,FAR1,GALNT18,INSC,IPO7,LMO1,LOC102724957,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,NLRP10,NRIP3,OR10A3,OR10A6,PARVA,PDE3B,PSMA1,PTH,RASSF10,RIC3,RNF141,RPL27A,RRAS2,SBF2,SCUBE2,SPON1,ST5,STK33,SWAP70,TEAD1,TMEM41B,TMEM9B,TRIM66,TUB,USP47,WEE1,ZBED5,ZNF143"
TCGA.CK.5914.01A	11	7981184	8251820	32	-0.1714	NEUTRAL	NA	5	"EIF3F,LMO1,NLRP10,RIC3,TUB"
TCGA.CM.6675	11	7982093	78409603	20128	0.0159	NEUTRAL	NA	716	Too-Many
TCGA.AA.A01Q.01A	11	8013266	8122366	20	-0.1366	NEUTRAL	NA	2	"EIF3F,TUB"
TCGA.AA.A00N.01A	11	8060374	8435012	26	0.0716	NEUTRAL	NA	4	"LMO1,RIC3,STK33,TUB"
TCGA.AG.A00C.01A	11	8060374	8772109	59	-0.0076	NEUTRAL	NA	7	"LMO1,RIC3,RPL27A,ST5,STK33,TRIM66,TUB"
TCGA.AA.A01Q.01A	11	8122981	8496178	20	0.1477	NEUTRAL	NA	4	"LMO1,RIC3,STK33,TUB"
TCGA.AA.A010.01A	11	8148158	8639423	22	0.1135	NEUTRAL	NA	4	"LMO1,RIC3,STK33,TRIM66"
TCGA.AG.A01W.01A	11	8430910	8602814	17	0.2816	NEUTRAL	NA	1	STK33
TCGA.AG.A01W.01A	11	8616726	8629828	9	-0.1565	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	8660843	8677310	11	0.3096	NEUTRAL	NA	1	TRIM66
TCGA.AG.A01W.01A	11	8680659	9505597	124	-0.1771	NEUTRAL	NA	12	"AKIP1,ASCL3,C11orf16,DENND5A,IPO7,NRIP3,RPL27A,SCUBE2,ST5,TMEM41B,TMEM9B,ZNF143"
TCGA.AA.A01Q.01A	11	8705509	8747570	20	-0.4285	NEUTRAL	NA	2	"RPL27A,ST5"
TCGA.AG.3891.01A	11	8706234	17098674	530	-0.061	NEUTRAL	NA	51	"ADM,AKIP1,AMPD3,ARNTL,ASCL3,BTBD10,C11orf16,C11orf58,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYP2R1,DENND5A,DKK3,EIF4G2,FAR1,GALNT18,INSC,IPO7,LOC102724957,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,NRIP3,PARVA,PDE3B,PLEKHA7,PSMA1,PTH,RASSF10,RNF141,RPL27A,RPS13,RRAS2,SBF2,SCUBE2,SOX6,SPON1,ST5,SWAP70,TEAD1,TMEM41B,TMEM9B,USP47,WEE1,ZBED5,ZNF143"
TCGA.AG.3909.01A	11	8719040	8977708	29	-0.1814	NEUTRAL	NA	5	"AKIP1,ASCL3,C11orf16,ST5,TMEM9B"
TCGA.AA.A00N.01A	11	8720424	8933000	16	0.2543	NEUTRAL	NA	2	"AKIP1,ST5"
TCGA.AG.3906.01A	11	8734110	8977708	21	0.2105	NEUTRAL	NA	5	"AKIP1,ASCL3,C11orf16,ST5,TMEM9B"
TCGA.AA.A01Q.01A	11	8751456	8942816	8	0.0378	NEUTRAL	NA	3	"AKIP1,C11orf16,ST5"
TCGA.A6.3807	11	8784868	70093181	17778	0.0015	NEUTRAL	NA	612	Too-Many
TCGA.AG.A00C.01A	11	8933952	9051411	24	0.3159	NEUTRAL	NA	6	"AKIP1,ASCL3,C11orf16,NRIP3,SCUBE2,TMEM9B"
TCGA.AA.A00F.01A	11	8947023	8969818	6	0.2003	NEUTRAL	NA	3	"ASCL3,C11orf16,TMEM9B"
TCGA.AA.A01Q.01A	11	8974699	9043364	12	-0.2666	NEUTRAL	NA	3	"NRIP3,SCUBE2,TMEM9B"
TCGA.CK.5914.01A	11	9025267	9286457	45	0.2763	NEUTRAL	NA	3	"DENND5A,NRIP3,SCUBE2"
TCGA.AA.A00F.01A	11	9025267	9549020	87	0.176	NEUTRAL	NA	6	"DENND5A,IPO7,NRIP3,SCUBE2,TMEM41B,ZNF143"
TCGA.AG.3909.01A	11	9042550	9047221	3	0.214	NEUTRAL	NA	1	SCUBE2
TCGA.AG.4009.01A	11	9042550	9081907	15	-0.0207	NEUTRAL	NA	1	SCUBE2
TCGA.AG.3906.01A	11	9042550	9746168	94	0.2549	NEUTRAL	NA	7	"DENND5A,IPO7,SCUBE2,SWAP70,TMEM41B,WEE1,ZNF143"
TCGA.AA.A01Q.01A	11	9047221	9546770	83	0.218	NEUTRAL	NA	5	"DENND5A,IPO7,SCUBE2,TMEM41B,ZNF143"
TCGA.AG.A00C.01A	11	9052253	9229092	38	-0.2066	NEUTRAL	NA	2	"DENND5A,SCUBE2"
TCGA.G4.6314	11	9063536	11570894	1067	0.212	NEUTRAL	NA	19	"ADM,AMPD3,CSNK2A3,CTR9,DENND5A,EIF4G2,GALNT18,IPO7,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SCUBE2,SWAP70,TMEM41B,WEE1,ZBED5,ZNF143"
TCGA.AG.4009.01A	11	9163438	9549020	62	0.0294	NEUTRAL	NA	4	"DENND5A,IPO7,TMEM41B,ZNF143"
TCGA.AA.A00Q.01A	11	9199627	9771362	69	0.2203	NEUTRAL	NA	6	"DENND5A,IPO7,SWAP70,TMEM41B,WEE1,ZNF143"
TCGA.AA.A00D.01A	11	9229092	9771362	63	0.3445	NEUTRAL	NA	6	"DENND5A,IPO7,SWAP70,TMEM41B,WEE1,ZNF143"
TCGA.AZ.4684.01A	11	9286457	9519205	38	-0.4376	NEUTRAL	NA	4	"DENND5A,IPO7,TMEM41B,ZNF143"
TCGA.DM.A28M.01A	11	9304943	9519205	37	-0.512	NEUTRAL	NA	3	"IPO7,TMEM41B,ZNF143"
TCGA.AA.A00N.01A	11	9304943	9595449	44	-0.1751	NEUTRAL	NA	4	"IPO7,TMEM41B,WEE1,ZNF143"
TCGA.AG.A00C.01A	11	9304943	9771362	59	0.1739	NEUTRAL	NA	5	"IPO7,SWAP70,TMEM41B,WEE1,ZNF143"
TCGA.AA.A00A.01A	11	9307950	9771362	61	0.3576	NEUTRAL	NA	5	"IPO7,SWAP70,TMEM41B,WEE1,ZNF143"
TCGA.AG.3909.01A	11	9321094	9500960	27	-0.0376	NEUTRAL	NA	3	"IPO7,TMEM41B,ZNF143"
TCGA.CK.5914.01A	11	9335856	9549020	37	-0.2514	NEUTRAL	NA	3	"IPO7,TMEM41B,ZNF143"
TCGA.AA.A010.01A	11	9450034	9496041	15	0.1325	NEUTRAL	NA	2	"IPO7,ZNF143"
TCGA.A6.3808.01A	11	9466597	9850856	49	-0.3731	NEUTRAL	NA	5	"IPO7,SBF2,SWAP70,WEE1,ZNF143"
TCGA.DM.A28M.01A	11	9522591	9595449	7	-0.125	NEUTRAL	NA	2	"WEE1,ZNF143"
TCGA.AA.3509.01A	11	9522591	11913465	162	0.0806	NEUTRAL	NA	16	"ADM,AMPD3,CSNK2A3,CTR9,EIF4G2,GALNT18,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SWAP70,USP47,WEE1,ZBED5,ZNF143"
TCGA.AZ.4684.01A	11	9522591	11913465	162	0.2318	NEUTRAL	NA	16	"ADM,AMPD3,CSNK2A3,CTR9,EIF4G2,GALNT18,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SWAP70,USP47,WEE1,ZBED5,ZNF143"
TCGA.AA.A01Q.01A	11	9549020	9603032	5	-0.3771	NEUTRAL	NA	2	"WEE1,ZNF143"
TCGA.AG.A01W.01A	11	9554011	13344761	254	0.0727	NEUTRAL	NA	22	"ADM,AMPD3,ARNTL,CSNK2A3,CTR9,DKK3,EIF4G2,GALNT18,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,PARVA,RASSF10,RNF141,SBF2,SWAP70,TEAD1,USP47,WEE1,ZBED5"
TCGA.CM.5349	11	9568462	9811698	79	-0.0645	NEUTRAL	NA	3	"SBF2,SWAP70,WEE1"
TCGA.AA.A00L.01A	11	9597434	15261931	287	0.0561	NEUTRAL	NA	34	"ADM,AMPD3,ARNTL,BTBD10,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYP2R1,DKK3,EIF4G2,FAR1,GALNT18,INSC,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,PARVA,PDE3B,PSMA1,PTH,RASSF10,RNF141,RRAS2,SBF2,SPON1,SWAP70,TEAD1,USP47,WEE1,ZBED5"
TCGA.AG.A008.01A	11	9603032	9609958	4	0.2635	NEUTRAL	NA	1	WEE1
TCGA.DM.A28M.01A	11	9603032	11926924	155	-0.1176	NEUTRAL	NA	15	"ADM,AMPD3,CSNK2A3,CTR9,EIF4G2,GALNT18,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SWAP70,USP47,WEE1,ZBED5"
TCGA.AG.3909.01A	11	9606756	9761681	11	0.2267	NEUTRAL	NA	2	"SWAP70,WEE1"
TCGA.AA.A01Q.01A	11	9606756	10800199	107	0.1919	NEUTRAL	NA	10	"ADM,AMPD3,CTR9,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SWAP70,WEE1"
TCGA.AG.4009.01A	11	9607984	9803007	15	-0.3714	NEUTRAL	NA	3	"SBF2,SWAP70,WEE1"
TCGA.AA.A010.01A	11	9685700	9803007	14	-0.3614	NEUTRAL	NA	2	"SBF2,SWAP70"
TCGA.AA.A00N.01A	11	9685700	9805850	15	-0.0682	NEUTRAL	NA	2	"SBF2,SWAP70"
TCGA.CK.5914.01A	11	9685700	10800199	120	0.0359	NEUTRAL	NA	9	"ADM,AMPD3,CTR9,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SWAP70"
TCGA.AA.A00F.01A	11	9715665	10800199	100	0.1468	NEUTRAL	NA	9	"ADM,AMPD3,CTR9,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SWAP70"
TCGA.AG.A008.01A	11	9715665	18044293	513	-0.2784	NEUTRAL	NA	49	"ABCC8,ADM,AMPD3,ARNTL,BTBD10,C11orf58,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYP2R1,DKK3,EIF4G2,FAR1,GALNT18,INSC,KCNC1,KCNJ11,LOC102724957,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,MYOD1,NCR3LG1,NUCB2,OTOG,PARVA,PDE3B,PIK3C2A,PLEKHA7,PSMA1,PTH,RASSF10,RNF141,RPS13,RRAS2,SBF2,SERGEF,SOX6,SPON1,SWAP70,TEAD1,TPH1,USH1C,USP47,ZBED5"
TCGA.AG.3906.01A	11	9749553	10820500	118	-0.0881	NEUTRAL	NA	10	"ADM,AMPD3,CTR9,EIF4G2,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SWAP70"
TCGA.AG.3909.01A	11	9801947	9989850	27	0.3404	NEUTRAL	NA	1	SBF2
TCGA.AA.A00D.01A	11	9801947	10011002	28	-0.1825	NEUTRAL	NA	1	SBF2
TCGA.AA.A00Q.01A	11	9801947	10011002	28	-0.0782	NEUTRAL	NA	1	SBF2
TCGA.AG.A00C.01A	11	9801947	10800199	108	-0.1711	NEUTRAL	NA	8	"ADM,AMPD3,CTR9,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2"
TCGA.AA.A00A.01A	11	9801947	13030646	162	0.0393	NEUTRAL	NA	18	"ADM,AMPD3,CSNK2A3,CTR9,DKK3,EIF4G2,GALNT18,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,PARVA,RNF141,SBF2,TEAD1,USP47,ZBED5"
TCGA.AG.4009.01A	11	9805850	10215395	37	0.0015	NEUTRAL	NA	1	SBF2
TCGA.CM.5349	11	9813307	43571404	12566	0.1699	NEUTRAL	NA	143	Too-Many
TCGA.AA.3850	11	9871015	11116591	510	0.17475	NEUTRAL	NA	10	"ADM,AMPD3,CTR9,EIF4G2,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,ZBED5"
TCGA.A6.4105	11	9872812	28402217	7382	0.0266	NEUTRAL	NA	95	"ABCC8,ADM,AMPD3,ANO3,ANO5,ARNTL,BBOX1,BDNF,BTBD10,C11orf58,CALCA,CALCB,CCDC179,CCDC34,COPB1,CSNK2A3,CSRP3,CTR9,CYP2R1,DBX1,DKK3,E2F8,EIF4G2,FANCF,FAR1,FIBIN,GALNT18,GAS2,GTF2H1,HPS5,HTATIP2,IGSF22,INSC,KCNC1,KCNJ11,KIF18A,LDHA,LDHAL6A,LDHC,LGR4,LIN7C,LOC102724957,LUZP2,LYVE1,METTL15,MICAL2,MICALCL,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MRVI1,MTRNR2L8,MUC15,MYOD1,NAV2,NCR3LG1,NELL1,NUCB2,OTOG,PARVA,PDE3B,PIK3C2A,PLEKHA7,PRMT3,PSMA1,PTH,PTPN5,RASSF10,RNF141,RPS13,RRAS2,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SBF2,SERGEF,SLC17A6,SLC5A12,SLC6A5,SOX6,SPON1,SPTY2D1,SVIP,TEAD1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,USP47,ZBED5,ZDHHC13"
TCGA.AG.3909.01A	11	10011002	10483024	17	-0.0113	NEUTRAL	NA	3	"ADM,AMPD3,SBF2"
TCGA.AA.A00D.01A	11	10013925	10049951	7	0.3313	NEUTRAL	NA	1	SBF2
TCGA.AA.A00Q.01A	11	10049951	17565738	364	-0.1213	NEUTRAL	NA	43	"ABCC8,ADM,AMPD3,ARNTL,BTBD10,C11orf58,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYP2R1,DKK3,EIF4G2,FAR1,GALNT18,INSC,KCNJ11,LOC102724957,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,NCR3LG1,NUCB2,PARVA,PDE3B,PIK3C2A,PLEKHA7,PSMA1,PTH,RASSF10,RNF141,RPS13,RRAS2,SBF2,SOX6,SPON1,TEAD1,USH1C,USP47,ZBED5"
TCGA.AA.A00D.01A	11	10051265	10540529	23	-0.1546	NEUTRAL	NA	5	"ADM,AMPD3,MTRNR2L8,RNF141,SBF2"
TCGA.AA.A00N.01A	11	10327228	10483024	6	-0.358	NEUTRAL	NA	2	"ADM,AMPD3"
TCGA.AG.4009.01A	11	10503572	15212197	287	0.0686	NEUTRAL	NA	30	"AMPD3,ARNTL,BTBD10,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYP2R1,DKK3,EIF4G2,FAR1,GALNT18,INSC,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,PARVA,PDE3B,PSMA1,PTH,RASSF10,RNF141,RRAS2,SPON1,TEAD1,USP47,ZBED5"
TCGA.AG.3909.01A	11	10527258	10581315	8	-0.4917	NEUTRAL	NA	4	"AMPD3,LYVE1,MTRNR2L8,RNF141"
TCGA.AA.A00N.01A	11	10527258	10581995	9	-0.4863	NEUTRAL	NA	4	"AMPD3,LYVE1,MTRNR2L8,RNF141"
TCGA.AG.A015.01A	11	10536422	45893591	1394	-0.1617	NEUTRAL	NA	154	Too-Many
TCGA.AA.A00D.01A	11	10546692	10874373	44	0.1955	NEUTRAL	NA	6	"CTR9,EIF4G2,LYVE1,MRVI1,RNF141,ZBED5"
TCGA.AY.A71X	11	10577396	54940341	13953	-0.0241	NEUTRAL	NA	207	Too-Many
TCGA.NH.A6GA	11	10664032	116728276	32903	0.0154	NEUTRAL	NA	867	Too-Many
TCGA.AA.A02K.01A	11	10673544	13031812	142	-0.1943	NEUTRAL	NA	13	"CSNK2A3,CTR9,DKK3,EIF4G2,GALNT18,MICAL2,MICALCL,MRVI1,PARVA,RASSF10,TEAD1,USP47,ZBED5"
TCGA.AA.A00N.01A	11	10774182	10800199	20	-0.1184	NEUTRAL	NA	1	CTR9
TCGA.AG.3909.01A	11	10774182	10800199	20	-0.021	NEUTRAL	NA	1	CTR9
TCGA.AG.A011.01A	11	10784937	17554739	383	-0.3346	NEUTRAL	NA	36	"ABCC8,ARNTL,BTBD10,C11orf58,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYP2R1,DKK3,EIF4G2,FAR1,GALNT18,INSC,KCNJ11,LOC102724957,MICAL2,MICALCL,NCR3LG1,NUCB2,PARVA,PDE3B,PIK3C2A,PLEKHA7,PSMA1,PTH,RASSF10,RPS13,RRAS2,SOX6,SPON1,TEAD1,USH1C,USP47,ZBED5"
TCGA.AA.3529	11	10786174	57270508	14477	0.0021	NEUTRAL	NA	264	Too-Many
TCGA.AA.A01Q.01A	11	10819294	10828721	12	-0.3703	NEUTRAL	NA	1	EIF4G2
TCGA.AG.3906.01A	11	10821059	10874992	11	-0.3972	NEUTRAL	NA	2	"EIF4G2,ZBED5"
TCGA.AA.3982	11	10866026	10918278	22	-0.1648	NEUTRAL	NA	1	ZBED5
TCGA.AA.A01Q.01A	11	10874373	11989902	19	0.305	NEUTRAL	NA	5	"CSNK2A3,DKK3,GALNT18,USP47,ZBED5"
TCGA.AA.A00D.01A	11	10874992	15261931	162	-0.1597	NEUTRAL	NA	23	"ARNTL,BTBD10,CALCA,CALCB,COPB1,CSNK2A3,CYP2R1,DKK3,FAR1,GALNT18,INSC,MICAL2,MICALCL,PARVA,PDE3B,PSMA1,PTH,RASSF10,RRAS2,SPON1,TEAD1,USP47,ZBED5"
TCGA.AG.A00C.01A	11	10874992	18017301	377	-0.1355	NEUTRAL	NA	38	"ABCC8,ARNTL,BTBD10,C11orf58,CALCA,CALCB,COPB1,CSNK2A3,CYP2R1,DKK3,FAR1,GALNT18,INSC,KCNC1,KCNJ11,LOC102724957,MICAL2,MICALCL,MYOD1,NCR3LG1,NUCB2,OTOG,PARVA,PDE3B,PIK3C2A,PLEKHA7,PSMA1,PTH,RASSF10,RPS13,RRAS2,SERGEF,SOX6,SPON1,TEAD1,USH1C,USP47,ZBED5"
TCGA.AA.3982	11	10919086	11119227	129	0.2936	NEUTRAL	NA	0	None
TCGA.AA.3850	11	11163548	11374928	174	0.23015	NEUTRAL	NA	2	"CSNK2A3,GALNT18"
TCGA.AA.3982	11	11163548	12590115	896	0.3608	NEUTRAL	NA	7	"CSNK2A3,DKK3,GALNT18,MICAL2,MICALCL,PARVA,USP47"
TCGA.EI.7004	11	11253767	19079032	3034	0.0214	NEUTRAL	NA	58	"ABCC8,ARNTL,BTBD10,C11orf58,CALCA,CALCB,COPB1,CSNK2A3,CYP2R1,DKK3,FAR1,GALNT18,GTF2H1,HPS5,IGSF22,INSC,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,LOC102724957,MICAL2,MICALCL,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MYOD1,NCR3LG1,NUCB2,OTOG,PARVA,PDE3B,PIK3C2A,PLEKHA7,PSMA1,PTH,PTPN5,RASSF10,RPS13,RRAS2,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SOX6,SPON1,SPTY2D1,TEAD1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,USP47"
TCGA.AA.A00F.01A	11	11292654	11470241	10	-0.2195	NEUTRAL	NA	2	"CSNK2A3,GALNT18"
TCGA.AG.3906.01A	11	11292654	11941649	18	-0.0502	NEUTRAL	NA	3	"CSNK2A3,GALNT18,USP47"
TCGA.AA.3850	11	11388499	11607270	186	0.28585	NEUTRAL	NA	1	GALNT18
TCGA.BM.6198	11	11471292	28522534	6626	-0.43155	NEUTRAL	NA	84	"ABCC8,ANO3,ANO5,ARNTL,BBOX1,BDNF,BTBD10,C11orf58,CALCA,CALCB,CCDC179,CCDC34,COPB1,CSRP3,CYP2R1,DBX1,DKK3,E2F8,FANCF,FAR1,FIBIN,GALNT18,GAS2,GTF2H1,HPS5,HTATIP2,IGSF22,INSC,KCNC1,KCNJ11,KIF18A,LDHA,LDHAL6A,LDHC,LGR4,LIN7C,LOC102724957,LUZP2,METTL15,MICAL2,MICALCL,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MUC15,MYOD1,NAV2,NCR3LG1,NELL1,NUCB2,OTOG,PARVA,PDE3B,PIK3C2A,PLEKHA7,PRMT3,PSMA1,PTH,PTPN5,RASSF10,RPS13,RRAS2,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SLC17A6,SLC5A12,SLC6A5,SOX6,SPON1,SPTY2D1,SVIP,TEAD1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,USP47,ZDHHC13"
TCGA.AA.3850	11	11610012	11984853	143	-0.07395	NEUTRAL	NA	3	"DKK3,GALNT18,USP47"
TCGA.AA.A00N.01A	11	11642869	11926924	8	0.3257	NEUTRAL	NA	2	"GALNT18,USP47"
TCGA.CK.5914.01A	11	11642869	14264821	132	0.2926	NEUTRAL	NA	13	"ARNTL,BTBD10,DKK3,FAR1,GALNT18,MICAL2,MICALCL,PARVA,PTH,RASSF10,SPON1,TEAD1,USP47"
TCGA.F4.6459	11	11773611	25079195	5306	-0.0437	NEUTRAL	NA	72	"ABCC8,ANO5,ARNTL,BTBD10,C11orf58,CALCA,CALCB,CCDC179,COPB1,CSRP3,CYP2R1,DBX1,DKK3,E2F8,FANCF,FAR1,GAS2,GTF2H1,HPS5,HTATIP2,IGSF22,INSC,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,LOC102724957,LUZP2,MICAL2,MICALCL,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MYOD1,NAV2,NCR3LG1,NELL1,NUCB2,OTOG,PARVA,PDE3B,PIK3C2A,PLEKHA7,PRMT3,PSMA1,PTH,PTPN5,RASSF10,RPS13,RRAS2,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SLC17A6,SLC6A5,SOX6,SPON1,SPTY2D1,SVIP,TEAD1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,USP47,ZDHHC13"
TCGA.AA.A010.01A	11	11971880	11977541	4	-0.4762	NEUTRAL	NA	1	USP47
TCGA.AG.3906.01A	11	11971880	17352862	272	-0.0691	NEUTRAL	NA	27	"ARNTL,BTBD10,C11orf58,CALCA,CALCB,COPB1,CYP2R1,DKK3,FAR1,INSC,LOC102724957,MICAL2,MICALCL,NUCB2,PARVA,PDE3B,PIK3C2A,PLEKHA7,PSMA1,PTH,RASSF10,RPS13,RRAS2,SOX6,SPON1,TEAD1,USP47"
TCGA.AA.3509.01A	11	11976413	13407187	81	-0.1754	NEUTRAL	NA	8	"ARNTL,DKK3,MICAL2,MICALCL,PARVA,RASSF10,TEAD1,USP47"
TCGA.AZ.4684.01A	11	11976413	13407187	81	-0.0132	NEUTRAL	NA	8	"ARNTL,DKK3,MICAL2,MICALCL,PARVA,RASSF10,TEAD1,USP47"
TCGA.DM.A28M.01A	11	11976413	13743256	99	-0.1344	NEUTRAL	NA	11	"ARNTL,BTBD10,DKK3,FAR1,MICAL2,MICALCL,PARVA,PTH,RASSF10,TEAD1,USP47"
TCGA.AA.A00F.01A	11	11986024	20139638	482	0.1665	NEUTRAL	NA	59	"ABCC8,ARNTL,BTBD10,C11orf58,CALCA,CALCB,COPB1,CSRP3,CYP2R1,DKK3,E2F8,FAR1,GTF2H1,HPS5,IGSF22,INSC,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,LOC102724957,MICAL2,MICALCL,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MYOD1,NAV2,NCR3LG1,NUCB2,OTOG,PARVA,PDE3B,PIK3C2A,PLEKHA7,PSMA1,PTH,PTPN5,RASSF10,RPS13,RRAS2,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SOX6,SPON1,SPTY2D1,TEAD1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,ZDHHC13"
TCGA.AA.3850	11	11991474	12327307	249	0.32685	NEUTRAL	NA	3	"DKK3,MICAL2,MICALCL"
TCGA.AA.A01Q.01A	11	12020186	12283991	28	-0.3592	NEUTRAL	NA	2	"DKK3,MICAL2"
TCGA.CM.4752	11	12071279	134944769	39310	-0.0064	NEUTRAL	NA	1029	Too-Many
TCGA.F4.6460	11	12192470	79648378	19016	0.0586	NEUTRAL	NA	681	Too-Many
TCGA.AA.3697	11	12234495	134944769	39172	0.0439	NEUTRAL	NA	1029	Too-Many
TCGA.D5.5539	11	12304840	13919849	731	-0.3958	NEUTRAL	NA	8	"ARNTL,BTBD10,FAR1,MICALCL,PARVA,PTH,RASSF10,TEAD1"
TCGA.AA.A01Q.01A	11	12315076	14992605	109	0.1269	NEUTRAL	NA	15	"ARNTL,BTBD10,CALCA,COPB1,CYP2R1,FAR1,MICALCL,PARVA,PDE3B,PSMA1,PTH,RASSF10,RRAS2,SPON1,TEAD1"
TCGA.AA.3850	11	12340504	12566916	124	0.26885	NEUTRAL	NA	2	"MICALCL,PARVA"
TCGA.AA.3982	11	12598928	13142079	268	0.2795	NEUTRAL	NA	2	"RASSF10,TEAD1"
TCGA.AA.3850	11	12641624	13142079	255	0.17715	NEUTRAL	NA	2	"RASSF10,TEAD1"
TCGA.AA.3989	11	12844300	51563635	12666	-0.0048	NEUTRAL	NA	195	Too-Many
TCGA.AA.3982	11	13147294	13155777	6	-0.4641	NEUTRAL	NA	0	None
TCGA.AA.3850	11	13154669	15809704	870	-0.03985	NEUTRAL	NA	14	"ARNTL,BTBD10,CALCA,CALCB,COPB1,CYP2R1,FAR1,INSC,LOC102724957,PDE3B,PSMA1,PTH,RRAS2,SPON1"
TCGA.AA.3982	11	13157777	13260180	81	0.3055	NEUTRAL	NA	0	None
TCGA.D5.5538	11	13187976	16670196	1065	0.0331	NEUTRAL	NA	15	"ARNTL,BTBD10,CALCA,CALCB,COPB1,CYP2R1,FAR1,INSC,LOC102724957,PDE3B,PSMA1,PTH,RRAS2,SOX6,SPON1"
TCGA.AA.3982	11	13277931	13927331	221	0.2322	NEUTRAL	NA	4	"ARNTL,BTBD10,FAR1,PTH"
TCGA.AG.A01W.01A	11	13364682	14491666	63	-0.0281	NEUTRAL	NA	7	"ARNTL,BTBD10,COPB1,FAR1,PTH,RRAS2,SPON1"
TCGA.AA.A00A.01A	11	13386997	134257391	6289	0.0407	NEUTRAL	NA	1024	Too-Many
TCGA.AA.A02K.01A	11	13402654	34180792	1020	-0.2019	NEUTRAL	NA	104	Too-Many
TCGA.D5.5539	11	13919998	134944769	38374	-0.0382	NEUTRAL	NA	1020	Too-Many
TCGA.AA.3982	11	13938801	15739188	507	0.1513	NEUTRAL	NA	10	"CALCA,CALCB,COPB1,CYP2R1,INSC,LOC102724957,PDE3B,PSMA1,RRAS2,SPON1"
TCGA.AA.3844	11	13938801	16006472	653	-0.1375	NEUTRAL	NA	11	"CALCA,CALCB,COPB1,CYP2R1,INSC,LOC102724957,PDE3B,PSMA1,RRAS2,SOX6,SPON1"
TCGA.AA.3509.01A	11	13984412	14541746	49	-0.0026	NEUTRAL	NA	4	"COPB1,PSMA1,RRAS2,SPON1"
TCGA.AZ.4684.01A	11	13984412	14665614	51	0.1647	NEUTRAL	NA	5	"COPB1,PDE3B,PSMA1,RRAS2,SPON1"
TCGA.DM.A28M.01A	11	13984412	14665614	51	-0.0588	NEUTRAL	NA	5	"COPB1,PDE3B,PSMA1,RRAS2,SPON1"
TCGA.AG.3909.01A	11	14101398	15133964	74	-0.0083	NEUTRAL	NA	8	"CALCA,CALCB,COPB1,CYP2R1,PDE3B,PSMA1,RRAS2,SPON1"
TCGA.CK.5914.01A	11	14276045	14498417	24	-0.1771	NEUTRAL	NA	3	"COPB1,RRAS2,SPON1"
TCGA.A6.3808.01A	11	14277156	14540465	40	-0.4443	NEUTRAL	NA	4	"COPB1,PSMA1,RRAS2,SPON1"
TCGA.CK.5914.01A	11	14541746	14810625	6	0.3178	NEUTRAL	NA	2	"PDE3B,PSMA1"
TCGA.AA.A010.01A	11	14632421	14907271	21	-0.0745	NEUTRAL	NA	3	"CYP2R1,PDE3B,PSMA1"
TCGA.AG.A01W.01A	11	14821900	15224003	30	-0.0531	NEUTRAL	NA	5	"CALCA,CALCB,CYP2R1,INSC,PDE3B"
TCGA.CK.5914.01A	11	14825463	14865341	8	-0.2919	NEUTRAL	NA	1	PDE3B
TCGA.DM.A28M.01A	11	14839701	14899628	12	-0.0892	NEUTRAL	NA	2	"CYP2R1,PDE3B"
TCGA.AZ.4684.01A	11	14913520	18309413	276	0.128	NEUTRAL	NA	28	"ABCC8,C11orf58,CALCA,CALCB,CYP2R1,HPS5,INSC,KCNC1,KCNJ11,LOC102724957,MRGPRX3,MRGPRX4,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,RPS13,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SOX6,TPH1,USH1C"
TCGA.DM.A28M.01A	11	14913520	19169094	394	-0.1764	NEUTRAL	NA	41	"ABCC8,C11orf58,CALCA,CALCB,CYP2R1,GTF2H1,HPS5,IGSF22,INSC,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,LOC102724957,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,PTPN5,RPS13,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SOX6,SPTY2D1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,ZDHHC13"
TCGA.G4.6314	11	14971804	17809723	925	0.1892	NEUTRAL	NA	18	"ABCC8,C11orf58,CALCA,CALCB,INSC,KCNC1,KCNJ11,LOC102724957,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,RPS13,SERGEF,SOX6,USH1C"
TCGA.AA.3968	11	15443680	74568264	16187	0.0201	NEUTRAL	NA	621	Too-Many
TCGA.AA.A03J	11	15717286	134944769	37137	-0.3072	NEUTRAL	NA	1011	Too-Many
TCGA.AA.3982	11	15742864	16659347	269	-0.3064	NEUTRAL	NA	1	SOX6
TCGA.AG.A01Y	11	15832813	15985571	79	0.3458	NEUTRAL	NA	0	None
TCGA.AA.3941	11	15839140	16011728	83	-0.2776	NEUTRAL	NA	1	SOX6
TCGA.AA.3850	11	15840594	16023323	89	0.14135	NEUTRAL	NA	1	SOX6
TCGA.AG.A01W.01A	11	15950884	16732958	21	0.3368	NEUTRAL	NA	1	SOX6
TCGA.AA.A01Q.01A	11	15994333	16816025	24	0.1204	NEUTRAL	NA	3	"C11orf58,PLEKHA7,SOX6"
TCGA.AG.4009.01A	11	15994333	17352862	82	0.0024	NEUTRAL	NA	6	"C11orf58,NUCB2,PIK3C2A,PLEKHA7,RPS13,SOX6"
TCGA.AZ.4323	11	16041155	16487064	80	-0.432	NEUTRAL	NA	1	SOX6
TCGA.AA.3977	11	16129776	16474546	63	-0.0363	NEUTRAL	NA	1	SOX6
TCGA.AA.3941	11	16485250	18159168	525	-0.1523	NEUTRAL	NA	17	"ABCC8,C11orf58,KCNC1,KCNJ11,MRGPRX3,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,RPS13,SAAL1,SERGEF,SOX6,TPH1,USH1C"
TCGA.AA.3977	11	16485250	78833534	17004	0.0234	NEUTRAL	NA	662	Too-Many
TCGA.AA.3811	11	16486893	16670196	29	0.0048	NEUTRAL	NA	1	SOX6
TCGA.AZ.4323	11	16492117	134944769	37495	-0.0786	NEUTRAL	NA	1010	Too-Many
TCGA.AA.3844	11	16595762	20840725	1816	0.0103	NEUTRAL	NA	43	"ABCC8,C11orf58,CSRP3,DBX1,E2F8,GTF2H1,HPS5,HTATIP2,IGSF22,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MYOD1,NAV2,NCR3LG1,NELL1,NUCB2,OTOG,PIK3C2A,PLEKHA7,PRMT3,PTPN5,RPS13,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SLC6A5,SPTY2D1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,ZDHHC13"
TCGA.AA.3982	11	16667833	20746767	1743	0.2784	NEUTRAL	NA	43	"ABCC8,C11orf58,CSRP3,DBX1,E2F8,GTF2H1,HPS5,HTATIP2,IGSF22,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MYOD1,NAV2,NCR3LG1,NELL1,NUCB2,OTOG,PIK3C2A,PLEKHA7,PRMT3,PTPN5,RPS13,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SLC6A5,SPTY2D1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,ZDHHC13"
TCGA.AA.3811	11	16709349	17834206	390	0.3466	NEUTRAL	NA	13	"ABCC8,C11orf58,KCNC1,KCNJ11,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,RPS13,SERGEF,USH1C"
TCGA.AA.3850	11	16709349	18161458	498	0.27605	NEUTRAL	NA	16	"ABCC8,C11orf58,KCNC1,KCNJ11,MRGPRX3,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,RPS13,SAAL1,SERGEF,TPH1,USH1C"
TCGA.D5.5538	11	16709349	18989395	788	0.3708	NEUTRAL	NA	33	"ABCC8,C11orf58,GTF2H1,HPS5,IGSF22,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX3,MRGPRX4,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,PTPN5,RPS13,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SPTY2D1,TMEM86A,TPH1,TSG101,UEVLD,USH1C"
TCGA.AA.A00D.01A	11	16760261	18010115	130	-0.0497	NEUTRAL	NA	13	"ABCC8,C11orf58,KCNC1,KCNJ11,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,RPS13,SERGEF,USH1C"
TCGA.AA.A00L.01A	11	16766092	18655683	251	0.1439	NEUTRAL	NA	29	"ABCC8,C11orf58,GTF2H1,HPS5,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,MRGPRX3,MRGPRX4,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,RPS13,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SPTY2D1,TPH1,TSG101,UEVLD,USH1C"
TCGA.AG.A01W.01A	11	16767172	17055241	22	-0.0059	NEUTRAL	NA	2	"C11orf58,PLEKHA7"
TCGA.AA.3509.01A	11	16769573	18309413	237	-0.0502	NEUTRAL	NA	22	"ABCC8,C11orf58,HPS5,KCNC1,KCNJ11,MRGPRX3,MRGPRX4,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,PLEKHA7,RPS13,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,TPH1,USH1C"
TCGA.AG.3611.01A	11	16810666	16863052	13	0.0722	NEUTRAL	NA	1	PLEKHA7
TCGA.AA.A00N.01A	11	16816417	16837672	6	-0.4043	NEUTRAL	NA	1	PLEKHA7
TCGA.AG.3909.01A	11	16816417	16837672	6	-0.3782	NEUTRAL	NA	1	PLEKHA7
TCGA.AA.A01Q.01A	11	16838327	17190174	41	0.2086	NEUTRAL	NA	3	"PIK3C2A,PLEKHA7,RPS13"
TCGA.AA.A010.01A	11	16863052	17096954	10	-0.1133	NEUTRAL	NA	2	"PLEKHA7,RPS13"
TCGA.AG.3611.01A	11	16872687	17414520	40	0.3237	NEUTRAL	NA	7	"ABCC8,KCNJ11,NCR3LG1,NUCB2,PIK3C2A,PLEKHA7,RPS13"
TCGA.AG.3909.01A	11	16892597	17096954	4	-0.0174	NEUTRAL	NA	2	"PLEKHA7,RPS13"
TCGA.CK.5914.01A	11	16892597	17157981	28	-0.4379	NEUTRAL	NA	3	"PIK3C2A,PLEKHA7,RPS13"
TCGA.AA.A00N.01A	11	16892597	17336879	42	0.2303	NEUTRAL	NA	4	"NUCB2,PIK3C2A,PLEKHA7,RPS13"
TCGA.A6.3808.01A	11	17035476	17416668	50	-0.4817	NEUTRAL	NA	7	"ABCC8,KCNJ11,NCR3LG1,NUCB2,PIK3C2A,PLEKHA7,RPS13"
TCGA.AG.A01W.01A	11	17067840	17092438	12	-0.2968	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	17095577	17373255	33	0.0994	NEUTRAL	NA	3	"NUCB2,PIK3C2A,RPS13"
TCGA.AG.3909.01A	11	17098674	17336879	37	0.2809	NEUTRAL	NA	3	"NUCB2,PIK3C2A,RPS13"
TCGA.AG.3891.01A	11	17111273	17126678	9	0.351	NEUTRAL	NA	1	PIK3C2A
TCGA.AG.3891.01A	11	17131942	45832286	1081	-0.1007	NEUTRAL	NA	120	Too-Many
TCGA.D5.6536	11	17157365	17831999	246	-0.0734	NEUTRAL	NA	10	"ABCC8,KCNC1,KCNJ11,MYOD1,NCR3LG1,NUCB2,OTOG,PIK3C2A,SERGEF,USH1C"
TCGA.AA.A010.01A	11	17167165	17352862	17	-0.3806	NEUTRAL	NA	2	"NUCB2,PIK3C2A"
TCGA.CK.5914.01A	11	17190174	17419834	23	-0.0392	NEUTRAL	NA	5	"ABCC8,KCNJ11,NCR3LG1,NUCB2,PIK3C2A"
TCGA.AG.3909.01A	11	17351657	17408426	4	-0.0385	NEUTRAL	NA	3	"KCNJ11,NCR3LG1,NUCB2"
TCGA.AG.A01W.01A	11	17373684	17476234	36	-0.2783	NEUTRAL	NA	3	"ABCC8,KCNJ11,NCR3LG1"
TCGA.AA.A01Q.01A	11	17408426	17484938	35	-0.1672	NEUTRAL	NA	2	"ABCC8,KCNJ11"
TCGA.AG.3611.01A	11	17415176	18111685	98	-0.0184	NEUTRAL	NA	8	"ABCC8,KCNC1,MYOD1,OTOG,SAAL1,SERGEF,TPH1,USH1C"
TCGA.AA.A00N.01A	11	17417107	17436012	15	0.1991	NEUTRAL	NA	1	ABCC8
TCGA.AG.4009.01A	11	17418476	18269422	99	-0.0514	NEUTRAL	NA	13	"ABCC8,KCNC1,MRGPRX3,MRGPRX4,MYOD1,OTOG,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,TPH1,USH1C"
TCGA.AG.3906.01A	11	17434167	17522556	23	0.2109	NEUTRAL	NA	2	"ABCC8,USH1C"
TCGA.AA.A010.01A	11	17436770	17527326	27	-0.0543	NEUTRAL	NA	2	"ABCC8,USH1C"
TCGA.AM.5820	11	17445025	17504362	38	0.0799	NEUTRAL	NA	1	ABCC8
TCGA.AA.A00N.01A	11	17470012	17630616	65	0.0055	NEUTRAL	NA	3	"ABCC8,OTOG,USH1C"
TCGA.AG.A01W.01A	11	17479153	18687501	165	-0.0297	NEUTRAL	NA	22	"ABCC8,GTF2H1,HPS5,KCNC1,LDHA,LDHAL6A,LDHC,MRGPRX3,MRGPRX4,MYOD1,OTOG,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SPTY2D1,TPH1,TSG101,UEVLD,USH1C"
TCGA.AG.3909.01A	11	17491601	17650642	34	0.2483	NEUTRAL	NA	3	"ABCC8,OTOG,USH1C"
TCGA.AG.A01Y	11	17520964	20903892	1592	-0.0434	NEUTRAL	NA	35	"CSRP3,DBX1,E2F8,GTF2H1,HPS5,HTATIP2,IGSF22,KCNC1,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MYOD1,NAV2,NELL1,OTOG,PRMT3,PTPN5,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SLC6A5,SPTY2D1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,ZDHHC13"
TCGA.AG.3906.01A	11	17522969	18269422	65	-0.068	NEUTRAL	NA	12	"KCNC1,MRGPRX3,MRGPRX4,MYOD1,OTOG,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,TPH1,USH1C"
TCGA.CK.5914.01A	11	17542377	17741328	63	-0.1178	NEUTRAL	NA	3	"MYOD1,OTOG,USH1C"
TCGA.AA.A01Q.01A	11	17565738	17653588	22	0.3741	NEUTRAL	NA	2	"OTOG,USH1C"
TCGA.AG.A011.01A	11	17631173	46625030	1060	0.0201	NEUTRAL	NA	126	Too-Many
TCGA.CM.6165.01A	11	17634136	17667070	16	0.3346	NEUTRAL	NA	1	OTOG
TCGA.AG.3909.01A	11	17741328	18025968	14	-0.2318	NEUTRAL	NA	3	"KCNC1,MYOD1,SERGEF"
TCGA.AA.A01Q.01A	11	17741328	18062142	26	-0.2662	NEUTRAL	NA	4	"KCNC1,MYOD1,SERGEF,TPH1"
TCGA.AA.A010.01A	11	17741328	18261406	44	-0.0418	NEUTRAL	NA	10	"KCNC1,MRGPRX3,MRGPRX4,MYOD1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,TPH1"
TCGA.AA.A00Q.01A	11	17741328	44286352	833	-0.102	NEUTRAL	NA	106	Too-Many
TCGA.CM.6165.01A	11	17741328	61026115	2065	0.0084	NEUTRAL	NA	305	Too-Many
TCGA.AA.3811	11	17834578	21056065	1572	0.0904	NEUTRAL	NA	31	"CSRP3,DBX1,E2F8,GTF2H1,HPS5,HTATIP2,IGSF22,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,NAV2,NELL1,PRMT3,PTPN5,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SLC6A5,SPTY2D1,TMEM86A,TPH1,TSG101,UEVLD,ZDHHC13"
TCGA.AM.5820	11	17835355	18123629	93	0.1153	NEUTRAL	NA	3	"SAAL1,SERGEF,TPH1"
TCGA.AA.A00N.01A	11	17899692	18017301	5	0.3607	NEUTRAL	NA	1	SERGEF
TCGA.AA.A00D.01A	11	18014428	18054804	14	0.3437	NEUTRAL	NA	2	"SERGEF,TPH1"
TCGA.AG.A008.01A	11	18045382	18051046	5	0.1988	NEUTRAL	NA	1	TPH1
TCGA.AG.A008.01A	11	18054804	63988461	2448	-0.2059	NEUTRAL	NA	383	Too-Many
TCGA.AA.A00D.01A	11	18057497	18387285	57	0.0975	NEUTRAL	NA	10	"GTF2H1,HPS5,MRGPRX3,MRGPRX4,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,TPH1"
TCGA.CK.5914.01A	11	18062142	18194795	13	-0.096	NEUTRAL	NA	4	"MRGPRX3,MRGPRX4,SAAL1,TPH1"
TCGA.AA.A00N.01A	11	18101894	18110836	5	0.2147	NEUTRAL	NA	1	SAAL1
TCGA.AG.3909.01A	11	18101894	18290725	20	0.1192	NEUTRAL	NA	7	"MRGPRX3,MRGPRX4,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1"
TCGA.AG.A00C.01A	11	18101894	18387285	55	0.0648	NEUTRAL	NA	9	"GTF2H1,HPS5,MRGPRX3,MRGPRX4,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1"
TCGA.AA.A01Q.01A	11	18101894	19250979	140	0.1042	NEUTRAL	NA	23	"CSRP3,E2F8,GTF2H1,HPS5,IGSF22,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,PTPN5,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SPTY2D1,TMEM86A,TSG101,UEVLD,ZDHHC13"
TCGA.AG.3611.01A	11	18113731	18610079	91	0.314	NEUTRAL	NA	14	"GTF2H1,HPS5,LDHA,LDHAL6A,LDHC,MRGPRX3,MRGPRX4,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,TSG101,UEVLD"
TCGA.AA.A00N.01A	11	18127407	18269422	10	0.2598	NEUTRAL	NA	6	"MRGPRX3,MRGPRX4,SAA2,SAA2-SAA4,SAA4,SAAL1"
TCGA.AM.5820	11	18135996	18276222	71	0.1831	NEUTRAL	NA	5	"MRGPRX3,MRGPRX4,SAA2,SAA2-SAA4,SAA4"
TCGA.AA.3850	11	18173806	18357179	76	0.14165	NEUTRAL	NA	7	"GTF2H1,HPS5,MRGPRX4,SAA1,SAA2,SAA2-SAA4,SAA4"
TCGA.AG.3598	11	18174375	134944769	37036	-0.0102	NEUTRAL	NA	993	Too-Many
TCGA.AA.3941	11	18193468	18861891	207	-0.0139	NEUTRAL	NA	16	"GTF2H1,HPS5,IGSF22,LDHA,LDHAL6A,LDHC,MRGPRX4,PTPN5,SAA1,SAA2,SAA2-SAA4,SAA4,SPTY2D1,TMEM86A,TSG101,UEVLD"
TCGA.AM.5820	11	18276335	18732845	98	-0.2521	NEUTRAL	NA	11	"GTF2H1,HPS5,IGSF22,LDHA,LDHAL6A,LDHC,SAA1,SPTY2D1,TMEM86A,TSG101,UEVLD"
TCGA.AG.4009.01A	11	18308106	18318297	8	-0.4437	NEUTRAL	NA	1	HPS5
TCGA.AG.3909.01A	11	18309413	18354585	17	-0.0469	NEUTRAL	NA	2	"GTF2H1,HPS5"
TCGA.CK.5914.01A	11	18312942	18357251	17	-0.1878	NEUTRAL	NA	2	"GTF2H1,HPS5"
TCGA.AZ.4684.01A	11	18312942	18496966	45	-0.3245	NEUTRAL	NA	5	"GTF2H1,HPS5,LDHA,LDHAL6A,LDHC"
TCGA.AA.3509.01A	11	18312942	18600212	69	-0.3862	NEUTRAL	NA	7	"GTF2H1,HPS5,LDHA,LDHAL6A,LDHC,TSG101,UEVLD"
TCGA.AG.3906.01A	11	18314385	20136121	176	0.0631	NEUTRAL	NA	17	"CSRP3,E2F8,GTF2H1,HPS5,IGSF22,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX2,NAV2,PTPN5,SPTY2D1,TMEM86A,TSG101,UEVLD,ZDHHC13"
TCGA.AA.A010.01A	11	18316529	18330456	9	-0.0634	NEUTRAL	NA	1	HPS5
TCGA.AG.4009.01A	11	18319056	31811473	453	-0.0883	NEUTRAL	NA	50	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,CSRP3,DBX1,DCDC1,DCDC5,DNAJC24,E2F8,ELP4,FANCF,FIBIN,FSHB,GAS2,GTF2H1,HPS5,HTATIP2,IGSF22,IMMP1L,KCNA4,KIF18A,LDHA,LDHAL6A,LDHC,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MRGPRX1,MRGPRX2,MUC15,NAV2,NELL1,PAX6,PRMT3,PTPN5,SLC17A6,SLC5A12,SLC6A5,SPTY2D1,SVIP,TMEM86A,TSG101,UEVLD,ZDHHC13"
TCGA.AA.A00N.01A	11	18326908	18332890	5	0.0277	NEUTRAL	NA	1	HPS5
TCGA.CK.5914.01A	11	18359649	18387285	10	0.2695	NEUTRAL	NA	1	GTF2H1
TCGA.CK.5914.01A	11	18451272	18741246	58	-0.4748	NEUTRAL	NA	7	"IGSF22,LDHAL6A,LDHC,SPTY2D1,TMEM86A,TSG101,UEVLD"
TCGA.AG.3909.01A	11	18496966	18566144	17	0.0105	NEUTRAL	NA	3	"LDHAL6A,TSG101,UEVLD"
TCGA.AA.A00N.01A	11	18497883	18655683	31	0.2702	NEUTRAL	NA	4	"LDHAL6A,SPTY2D1,TSG101,UEVLD"
TCGA.AZ.4684.01A	11	18497883	19077575	69	0.0202	NEUTRAL	NA	9	"IGSF22,LDHAL6A,MRGPRX1,MRGPRX2,PTPN5,SPTY2D1,TMEM86A,TSG101,UEVLD"
TCGA.AA.A02E.01A	11	18500245	46667373	940	-0.1203	NEUTRAL	NA	111	Too-Many
TCGA.AG.A00C.01A	11	18502037	18655683	28	-0.0865	NEUTRAL	NA	3	"SPTY2D1,TSG101,UEVLD"
TCGA.AA.A00D.01A	11	18557897	19213832	41	-0.1399	NEUTRAL	NA	9	"CSRP3,IGSF22,MRGPRX1,MRGPRX2,PTPN5,SPTY2D1,TMEM86A,UEVLD,ZDHHC13"
TCGA.AA.3509.01A	11	18610079	19138711	46	-0.02	NEUTRAL	NA	8	"IGSF22,MRGPRX1,MRGPRX2,PTPN5,SPTY2D1,TMEM86A,UEVLD,ZDHHC13"
TCGA.AG.A01W.01A	11	18696003	18711633	12	-0.2209	NEUTRAL	NA	0	None
TCGA.AG.A00C.01A	11	18722463	18743051	14	0.261	NEUTRAL	NA	2	"IGSF22,TMEM86A"
TCGA.AG.3611.01A	11	18723072	31484682	326	0.0938	NEUTRAL	NA	40	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,CSRP3,DBX1,DCDC1,DCDC5,DNAJC24,E2F8,FANCF,FIBIN,FSHB,GAS2,HTATIP2,IGSF22,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MRGPRX1,MRGPRX2,MUC15,NAV2,NELL1,PRMT3,PTPN5,SLC17A6,SLC5A12,SLC6A5,SVIP,TMEM86A,ZDHHC13"
TCGA.AA.A00L.01A	11	18730937	33779995	436	-0.0765	NEUTRAL	NA	55	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,C11orf91,CCDC179,CCDC34,CCDC73,CD59,CSRP3,CSTF3,DBX1,DCDC1,DCDC5,DEPDC7,DNAJC24,E2F8,EIF3M,ELP4,FANCF,FBXO3,FIBIN,FSHB,GAS2,HIPK3,HTATIP2,IGSF22,IMMP1L,KCNA4,KIAA1549L,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MRGPRX1,MRGPRX2,MUC15,NAV2,NELL1,PAX6,PRMT3,PRRG4,PTPN5,QSER1,RCN1,SLC17A6,SLC5A12,SLC6A5,SVIP,TCP11L1,WT1,ZDHHC13"
TCGA.AM.5820	11	18737951	20138962	819	0.13	NEUTRAL	NA	8	"CSRP3,E2F8,IGSF22,MRGPRX1,MRGPRX2,NAV2,PTPN5,ZDHHC13"
TCGA.CK.5914.01A	11	18743051	18755066	9	-0.0952	NEUTRAL	NA	2	"IGSF22,PTPN5"
TCGA.AG.A00C.01A	11	18743427	19250979	42	-0.256	NEUTRAL	NA	7	"CSRP3,E2F8,IGSF22,MRGPRX1,MRGPRX2,PTPN5,ZDHHC13"
TCGA.AA.3850	11	18866535	19056931	91	-0.32275	NEUTRAL	NA	1	MRGPRX1
TCGA.CK.5914.01A	11	18955350	19167711	5	-0.1369	NEUTRAL	NA	3	"MRGPRX1,MRGPRX2,ZDHHC13"
TCGA.AA.3685	11	18960114	134944769	36884	0.1157	NEUTRAL	NA	976	Too-Many
TCGA.RU.A8FL	11	18972151	34081217	5426	0.2207	NEUTRAL	NA	54	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,C11orf91,CAPRIN1,CCDC179,CCDC34,CCDC73,CD59,CSRP3,CSTF3,DBX1,DCDC1,DCDC5,DEPDC7,DNAJC24,E2F8,EIF3M,ELP4,FANCF,FBXO3,FIBIN,FSHB,GAS2,HIPK3,HTATIP2,IMMP1L,KCNA4,KIAA1549L,KIF18A,LGR4,LIN7C,LMO2,LUZP2,METTL15,MPPED2,MRGPRX2,MUC15,NAV2,NELL1,PAX6,PRMT3,PRRG4,QSER1,RCN1,SLC17A6,SLC5A12,SLC6A5,SVIP,TCP11L1,WT1,ZDHHC13"
TCGA.D5.6898	11	18972151	67601073	13345	0.181	NEUTRAL	NA	507	Too-Many
TCGA.AA.3858	11	18972151	126880541	33524	0.1416	NEUTRAL	NA	946	Too-Many
TCGA.EI.6506	11	18972151	134944769	36782	-0.0019	NEUTRAL	NA	976	Too-Many
TCGA.A6.6653	11	18972359	44656785	9402	-0.0052	NEUTRAL	NA	84	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,ANO3,ANO5,API5,APIP,ARL14EP,BBOX1,BDNF,C11orf74,C11orf91,C11orf96,CAPRIN1,CAT,CCDC179,CCDC34,CCDC73,CD44,CD59,CD82,COMMD9,CSRP3,CSTF3,DBX1,DCDC1,DCDC5,DEPDC7,DNAJC24,E2F8,EHF,EIF3M,ELF5,ELP4,EXT2,FANCF,FBXO3,FIBIN,FJX1,FSHB,GAS2,HIPK3,HSD17B12,HTATIP2,IMMP1L,KCNA4,KIAA1549L,KIF18A,LDLRAD3,LGR4,LIN7C,LMO2,LRRC4C,LUZP2,METTL15,MPPED2,MRGPRX2,MUC15,NAT10,NAV2,NELL1,PAMR1,PAX6,PDHX,PRMT3,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC17A6,SLC1A2,SLC5A12,SLC6A5,SVIP,TCP11L1,TRAF6,TRIM44,TTC17,WT1,ZDHHC13"
TCGA.AZ.6600	11	18974293	134944769	36835	-0.0287	NEUTRAL	NA	976	Too-Many
TCGA.D5.5538	11	18990319	81252707	17324	-0.0017	NEUTRAL	NA	628	Too-Many
TCGA.AA.3941	11	19056841	19183923	49	-0.251	NEUTRAL	NA	2	"MRGPRX2,ZDHHC13"
TCGA.AA.3850	11	19057766	19134042	34	0.20855	NEUTRAL	NA	1	MRGPRX2
TCGA.EI.7004	11	19082978	19167849	37	0.3589	NEUTRAL	NA	1	ZDHHC13
TCGA.AG.A01W.01A	11	19130289	19160732	12	-0.2115	NEUTRAL	NA	1	ZDHHC13
TCGA.AA.3850	11	19134821	19182569	12	-0.38265	NEUTRAL	NA	1	ZDHHC13
TCGA.AG.A01W.01A	11	19163025	19820929	19	0.2523	NEUTRAL	NA	4	"CSRP3,E2F8,NAV2,ZDHHC13"
TCGA.AA.A010.01A	11	19164474	19913931	40	-0.1045	NEUTRAL	NA	4	"CSRP3,E2F8,NAV2,ZDHHC13"
TCGA.DM.A28M.01A	11	19177293	89531360	4922	-0.1119	NEUTRAL	NA	657	Too-Many
TCGA.EI.7004	11	19178664	51195050	10448	0.0105	NEUTRAL	NA	142	Too-Many
TCGA.AZ.4684.01A	11	19186564	20691211	107	0.06	NEUTRAL	NA	9	"CSRP3,DBX1,E2F8,HTATIP2,NAV2,NELL1,PRMT3,SLC6A5,ZDHHC13"
TCGA.AA.3850	11	19187015	20836299	938	0.13415	NEUTRAL	NA	9	"CSRP3,DBX1,E2F8,HTATIP2,NAV2,NELL1,PRMT3,SLC6A5,ZDHHC13"
TCGA.AA.3941	11	19188121	20836299	936	-0.2916	NEUTRAL	NA	9	"CSRP3,DBX1,E2F8,HTATIP2,NAV2,NELL1,PRMT3,SLC6A5,ZDHHC13"
TCGA.AA.3509.01A	11	19194218	20699441	105	-0.0899	NEUTRAL	NA	9	"CSRP3,DBX1,E2F8,HTATIP2,NAV2,NELL1,PRMT3,SLC6A5,ZDHHC13"
TCGA.AG.3909.01A	11	19246155	19252140	5	-0.4168	NEUTRAL	NA	1	E2F8
TCGA.AA.A00D.01A	11	19246155	19890416	15	0.2108	NEUTRAL	NA	2	"E2F8,NAV2"
TCGA.AA.A01Q.01A	11	19251734	19890416	12	-0.3791	NEUTRAL	NA	2	"E2F8,NAV2"
TCGA.G4.6314	11	19252106	134944769	36727	0.184	NEUTRAL	NA	973	Too-Many
TCGA.AG.A01J.01A	11	19261564	47594450	1082	0.0392	NEUTRAL	NA	120	Too-Many
TCGA.AA.A01V	11	19580232	134944769	36476	0.0052	NEUTRAL	NA	972	Too-Many
TCGA.AG.3909.01A	11	19735205	19905774	6	-0.2183	NEUTRAL	NA	1	NAV2
TCGA.AG.A01W.01A	11	19847028	20046219	21	-0.1468	NEUTRAL	NA	1	NAV2
TCGA.AA.A00D.01A	11	19901367	20178546	39	-0.2909	NEUTRAL	NA	2	"DBX1,NAV2"
TCGA.AG.A00C.01A	11	19901367	20181463	41	-0.3241	NEUTRAL	NA	2	"DBX1,NAV2"
TCGA.AA.A01Q.01A	11	19901367	34163217	430	0.054	NEUTRAL	NA	51	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,C11orf91,CAPRIN1,CCDC179,CCDC34,CCDC73,CD59,CSTF3,DBX1,DCDC1,DCDC5,DEPDC7,DNAJC24,EIF3M,ELP4,FANCF,FBXO3,FIBIN,FSHB,GAS2,HIPK3,HTATIP2,IMMP1L,KCNA4,KIAA1549L,KIF18A,LGR4,LIN7C,LMO2,LUZP2,METTL15,MPPED2,MUC15,NAT10,NAV2,NELL1,PAX6,PRMT3,PRRG4,QSER1,RCN1,SLC17A6,SLC5A12,SLC6A5,SVIP,TCP11L1,WT1"
TCGA.AH.6549.01A	11	20005621	134257391	7655	0.0962	NEUTRAL	NA	972	Too-Many
TCGA.AG.A01W.01A	11	20055639	20585088	44	0.2326	NEUTRAL	NA	4	"DBX1,HTATIP2,NAV2,PRMT3"
TCGA.AA.A010.01A	11	20075606	20104509	10	-0.0686	NEUTRAL	NA	1	NAV2
TCGA.AA.3930.01A	11	20113704	20529823	35	-0.2339	NEUTRAL	NA	4	"DBX1,HTATIP2,NAV2,PRMT3"
TCGA.AG.3906.01A	11	20139638	20621123	26	-0.2392	NEUTRAL	NA	5	"DBX1,HTATIP2,NAV2,PRMT3,SLC6A5"
TCGA.AM.5820	11	20150776	30255866	3604	0.0115	NEUTRAL	NA	25	"ANO3,ANO5,BBOX1,BDNF,CCDC179,CCDC34,DBX1,FANCF,FIBIN,FSHB,GAS2,HTATIP2,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MUC15,NELL1,PRMT3,SLC17A6,SLC5A12,SLC6A5,SVIP"
TCGA.AA.A00N.01A	11	20177711	20385307	5	-0.3074	NEUTRAL	NA	2	"DBX1,HTATIP2"
TCGA.CK.5914.01A	11	20177711	20385307	5	0.1082	NEUTRAL	NA	2	"DBX1,HTATIP2"
TCGA.AA.A00D.01A	11	20180690	20625790	25	0.2424	NEUTRAL	NA	4	"DBX1,HTATIP2,PRMT3,SLC6A5"
TCGA.AG.A00C.01A	11	20385751	20649479	29	0.1204	NEUTRAL	NA	3	"HTATIP2,PRMT3,SLC6A5"
TCGA.AA.A010.01A	11	20413680	20628978	18	-0.067	NEUTRAL	NA	2	"PRMT3,SLC6A5"
TCGA.CK.5914.01A	11	20419074	20906939	31	0.0259	NEUTRAL	NA	3	"NELL1,PRMT3,SLC6A5"
TCGA.AA.A00F.01A	11	20419074	27360321	146	0.0133	NEUTRAL	NA	16	"ANO3,ANO5,BBOX1,CCDC179,CCDC34,FANCF,FIBIN,GAS2,LUZP2,MUC15,NELL1,PRMT3,SLC17A6,SLC5A12,SLC6A5,SVIP"
TCGA.AG.3909.01A	11	20429445	27362887	155	0.2133	NEUTRAL	NA	16	"ANO3,ANO5,BBOX1,CCDC179,CCDC34,FANCF,FIBIN,GAS2,LUZP2,MUC15,NELL1,PRMT3,SLC17A6,SLC5A12,SLC6A5,SVIP"
TCGA.AG.A01W.01A	11	20585555	21207417	26	-0.0676	NEUTRAL	NA	2	"NELL1,SLC6A5"
TCGA.AA.3930.01A	11	20621123	20636207	6	0.1498	NEUTRAL	NA	1	SLC6A5
TCGA.AA.A00N.01A	11	20621123	20906939	21	-0.4821	NEUTRAL	NA	2	"NELL1,SLC6A5"
TCGA.AG.3906.01A	11	20622713	20676208	15	0.1976	NEUTRAL	NA	1	SLC6A5
TCGA.AA.A00D.01A	11	20628511	30601746	201	-0.2137	NEUTRAL	NA	24	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,FANCF,FIBIN,FSHB,GAS2,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,NELL1,SLC17A6,SLC5A12,SLC6A5,SVIP"
TCGA.AG.A00C.01A	11	20652190	22833317	69	-0.2725	NEUTRAL	NA	6	"ANO5,FANCF,GAS2,NELL1,SLC17A6,SLC6A5"
TCGA.AA.3930.01A	11	20652190	46367005	814	-0.0011	NEUTRAL	NA	90	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,ANO3,ANO5,API5,APIP,ARL14EP,BBOX1,BDNF,C11orf74,C11orf91,C11orf94,C11orf96,CAPRIN1,CAT,CCDC179,CCDC34,CCDC73,CD44,CD59,CD82,CHST1,COMMD9,CREB3L1,CRY2,CSTF3,DCDC1,DCDC5,DEPDC7,DGKZ,DNAJC24,EHF,EIF3M,ELF5,ELP4,EXT2,FANCF,FBXO3,FIBIN,FJX1,FSHB,GAS2,GYLTL1B,HIPK3,HSD17B12,IMMP1L,KCNA4,KIAA1549L,KIF18A,LDLRAD3,LGR4,LIN7C,LMO2,LRRC4C,LUZP2,MAPK8IP1,METTL15,MPPED2,MUC15,NAT10,NELL1,PAMR1,PAX6,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC17A6,SLC1A2,SLC35C1,SLC5A12,SLC6A5,SVIP,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,WT1"
TCGA.AG.A00Y.01A	11	20691211	31814938	244	-0.19	NEUTRAL	NA	29	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,DCDC1,DCDC5,DNAJC24,ELP4,FANCF,FIBIN,FSHB,GAS2,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,NELL1,PAX6,SLC17A6,SLC5A12,SVIP"
TCGA.AA.3982	11	20747035	31063900	3618	-0.3051	NEUTRAL	NA	24	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,DCDC5,FANCF,FIBIN,FSHB,GAS2,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AA.A010.01A	11	20805179	22283638	33	-0.453	NEUTRAL	NA	2	"ANO5,NELL1"
TCGA.AG.3906.01A	11	20805179	45827352	701	-0.0534	NEUTRAL	NA	81	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,ANO3,ANO5,API5,APIP,ARL14EP,BBOX1,BDNF,C11orf74,C11orf91,C11orf96,CAPRIN1,CAT,CCDC179,CCDC34,CCDC73,CD44,CD59,CD82,CHST1,COMMD9,CSTF3,DCDC1,DCDC5,DEPDC7,DNAJC24,EHF,EIF3M,ELF5,ELP4,EXT2,FANCF,FBXO3,FIBIN,FJX1,FSHB,GAS2,HIPK3,HSD17B12,IMMP1L,KCNA4,KIAA1549L,KIF18A,LDLRAD3,LGR4,LIN7C,LMO2,LRRC4C,LUZP2,METTL15,MPPED2,MUC15,NAT10,NELL1,PAMR1,PAX6,PDHX,PRDM11,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC17A6,SLC1A2,SLC35C1,SLC5A12,SVIP,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,WT1"
TCGA.AA.3844	11	20841755	31796559	3654	-0.4962	NEUTRAL	NA	28	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,DCDC1,DCDC5,DNAJC24,ELP4,FANCF,FIBIN,FSHB,GAS2,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AA.3867	11	20967910	26997314	2330	-0.1062	NEUTRAL	NA	11	"ANO3,ANO5,CCDC179,FANCF,GAS2,LUZP2,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AA.3811	11	21056519	31079118	3407	-0.3982	NEUTRAL	NA	24	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,DCDC5,FANCF,FIBIN,FSHB,GAS2,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AG.A01W.01A	11	21348927	28308521	172	0.2184	NEUTRAL	NA	19	"ANO3,ANO5,BBOX1,BDNF,CCDC179,CCDC34,FANCF,FIBIN,GAS2,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AG.3883	11	22056004	26250998	1538	-0.3451	NEUTRAL	NA	7	"ANO5,CCDC179,FANCF,GAS2,LUZP2,SLC17A6,SVIP"
TCGA.CL.4957	11	22216275	22418379	61	-0.2854	NEUTRAL	NA	2	"ANO5,SLC17A6"
TCGA.CK.5914.01A	11	22291811	31812251	216	0.1157	NEUTRAL	NA	28	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,DCDC1,DCDC5,DNAJC24,ELP4,FANCF,FIBIN,FSHB,GAS2,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,PAX6,SLC17A6,SLC5A12,SVIP"
TCGA.CL.4957	11	22422502	28447141	2101	-0.0055	NEUTRAL	NA	16	"ANO3,BBOX1,BDNF,CCDC179,CCDC34,FANCF,FIBIN,GAS2,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MUC15,SLC5A12,SVIP"
TCGA.AA.3831	11	22473141	62064714	10781	0.0036	NEUTRAL	NA	296	Too-Many
TCGA.AA.A00N.01A	11	22696384	25004624	19	-0.248	NEUTRAL	NA	4	"CCDC179,GAS2,LUZP2,SVIP"
TCGA.D5.6924	11	23189087	23673140	216	-0.4019	NEUTRAL	NA	0	None
TCGA.D5.6924	11	23673753	134944769	34539	-0.1223	NEUTRAL	NA	960	Too-Many
TCGA.5M.AAT5	11	24251261	94878089	19479	0.0063	NEUTRAL	NA	675	Too-Many
TCGA.A6.2686	11	24455175	134944769	34353	-0.0313	NEUTRAL	NA	960	Too-Many
TCGA.DY.A1DC	11	24517242	25249320	279	0.0467	NEUTRAL	NA	1	LUZP2
TCGA.DC.6160.01A	11	24716286	26420004	11	0.3602	NEUTRAL	NA	2	"ANO3,LUZP2"
TCGA.AG.A00C.01A	11	24750693	27136947	59	-0.2788	NEUTRAL	NA	6	"ANO3,BBOX1,FIBIN,LUZP2,MUC15,SLC5A12"
TCGA.AA.A010.01A	11	24750693	31454960	168	-0.013	NEUTRAL	NA	20	"ANO3,ARL14EP,BBOX1,BDNF,CCDC34,DCDC1,DCDC5,DNAJC24,FIBIN,FSHB,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,SLC5A12"
TCGA.CA.6715	11	24800057	134944769	34074	-0.0103	NEUTRAL	NA	960	Too-Many
TCGA.F4.6459	11	25086508	122607363	29039	-0.0359	NEUTRAL	NA	861	Too-Many
TCGA.AF.2692	11	25144878	44670498	6688	0.0693	NEUTRAL	NA	67	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,ANO3,API5,APIP,ARL14EP,BBOX1,BDNF,C11orf74,C11orf91,C11orf96,CAPRIN1,CAT,CCDC34,CCDC73,CD44,CD59,CD82,COMMD9,CSTF3,DCDC1,DCDC5,DEPDC7,DNAJC24,EHF,EIF3M,ELF5,ELP4,EXT2,FBXO3,FIBIN,FJX1,FSHB,HIPK3,HSD17B12,IMMP1L,KCNA4,KIAA1549L,KIF18A,LDLRAD3,LGR4,LIN7C,LMO2,LRRC4C,METTL15,MPPED2,MUC15,NAT10,PAMR1,PAX6,PDHX,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,SLC5A12,TCP11L1,TRAF6,TRIM44,TTC17,WT1"
TCGA.DY.A1DC	11	25287388	26751041	610	0.0159	NEUTRAL	NA	3	"ANO3,MUC15,SLC5A12"
TCGA.D5.6930	11	25581710	31164998	1732	-0.0061	NEUTRAL	NA	16	"ANO3,ARL14EP,BBOX1,BDNF,CCDC34,DCDC5,FIBIN,FSHB,KCNA4,KIF18A,LGR4,LIN7C,METTL15,MPPED2,MUC15,SLC5A12"
TCGA.CK.4947	11	25671656	26327362	293	-0.4063	NEUTRAL	NA	0	None
TCGA.EF.5830	11	25684595	134944769	33877	0.0014	NEUTRAL	NA	959	Too-Many
TCGA.DM.A0XF	11	25700469	27779649	787	0.3337	NEUTRAL	NA	9	"ANO3,BBOX1,BDNF,CCDC34,FIBIN,LGR4,LIN7C,MUC15,SLC5A12"
TCGA.AG.3883	11	26252727	134944769	33725	0.1111	NEUTRAL	NA	959	Too-Many
TCGA.CK.4947	11	26336791	134944769	33615	-0.0136	NEUTRAL	NA	959	Too-Many
TCGA.DC.6160.01A	11	26421822	49930504	1168	0.0883	NEUTRAL	NA	124	Too-Many
TCGA.DY.A1DC	11	26843291	48652197	6916	0	NEUTRAL	NA	118	Too-Many
TCGA.AA.3867	11	27001333	27980880	305	0.1925	NEUTRAL	NA	6	"BBOX1,BDNF,CCDC34,FIBIN,LGR4,LIN7C"
TCGA.AG.A00C.01A	11	27141154	28042690	37	0.1349	NEUTRAL	NA	6	"BBOX1,BDNF,CCDC34,KIF18A,LGR4,LIN7C"
TCGA.AA.A00F.01A	11	27362206	27523299	26	0.3196	NEUTRAL	NA	3	"CCDC34,LGR4,LIN7C"
TCGA.AG.3909.01A	11	27397785	27695559	20	0.0382	NEUTRAL	NA	3	"BDNF,LGR4,LIN7C"
TCGA.G4.6626	11	27461778	29134741	352	0.0374	NEUTRAL	NA	5	"BDNF,KIF18A,LGR4,LIN7C,METTL15"
TCGA.AA.3695	11	27505676	80344862	13335	0.0261	NEUTRAL	NA	604	Too-Many
TCGA.AA.A00F.01A	11	27528180	31484682	63	-0.0127	NEUTRAL	NA	12	"ARL14EP,BDNF,DCDC1,DCDC5,DNAJC24,FSHB,IMMP1L,KCNA4,KIF18A,LIN7C,METTL15,MPPED2"
TCGA.DM.A0XF	11	27781978	134944769	33148	-0.0115	NEUTRAL	NA	950	Too-Many
TCGA.AA.3867	11	27992041	31789113	932	-0.071	NEUTRAL	NA	11	"ARL14EP,DCDC1,DCDC5,DNAJC24,ELP4,FSHB,IMMP1L,KCNA4,KIF18A,METTL15,MPPED2"
TCGA.AG.3909.01A	11	28042690	31804921	79	0.2969	NEUTRAL	NA	11	"ARL14EP,DCDC1,DCDC5,DNAJC24,ELP4,FSHB,IMMP1L,KCNA4,KIF18A,METTL15,MPPED2"
TCGA.AG.A00C.01A	11	28045236	31804921	78	-0.2237	NEUTRAL	NA	11	"ARL14EP,DCDC1,DCDC5,DNAJC24,ELP4,FSHB,IMMP1L,KCNA4,KIF18A,METTL15,MPPED2"
TCGA.CK.4948.01B	11	28104371	94926557	4911	0.0587	NEUTRAL	NA	666	Too-Many
TCGA.SS.A7HO	11	28376976	134944769	33036	0.017	NEUTRAL	NA	948	Too-Many
TCGA.CL.4957	11	28456860	28762523	84	-0.353	NEUTRAL	NA	0	None
TCGA.BM.6198	11	28534897	61438533	8491	0.08445	NEUTRAL	NA	264	Too-Many
TCGA.A6.4105	11	28641061	39966520	3819	0.0265	NEUTRAL	NA	45	"ABTB2,APIP,ARL14EP,C11orf74,C11orf91,CAPRIN1,CAT,CCDC73,CD44,CD59,COMMD9,CSTF3,DCDC1,DCDC5,DEPDC7,DNAJC24,EHF,EIF3M,ELF5,ELP4,FBXO3,FJX1,FSHB,HIPK3,IMMP1L,KCNA4,KIAA1549L,LDLRAD3,LMO2,MPPED2,NAT10,PAMR1,PAX6,PDHX,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,TCP11L1,TRAF6,TRIM44,WT1"
TCGA.CL.4957	11	28775910	55306150	6781	-0.0473	NEUTRAL	NA	120	Too-Many
TCGA.DC.6154	11	28979317	44844096	5553	0.3037	NEUTRAL	NA	57	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,ARL14EP,C11orf74,C11orf91,C11orf96,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,COMMD9,CSTF3,DCDC1,DCDC5,DEPDC7,DNAJC24,EHF,EIF3M,ELF5,ELP4,EXT2,FBXO3,FJX1,FSHB,HIPK3,HSD17B12,IMMP1L,KCNA4,KIAA1549L,LDLRAD3,LMO2,LRRC4C,MPPED2,NAT10,PAMR1,PAX6,PDHX,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,TCP11L1,TRAF6,TRIM44,TSPAN18,TTC17,WT1"
TCGA.AA.3819	11	28979317	112299843	23840	0.0072	NEUTRAL	NA	752	Too-Many
TCGA.AG.A01Y	11	29127094	58847175	7632	0.0021	NEUTRAL	NA	207	Too-Many
TCGA.G4.6626	11	29175394	84536917	14465	0.0179	NEUTRAL	NA	608	Too-Many
TCGA.G4.6322	11	29814399	134944769	32654	-0.0134	NEUTRAL	NA	948	Too-Many
TCGA.AG.A01W.01A	11	29988793	30473393	12	-0.2589	NEUTRAL	NA	4	"ARL14EP,FSHB,KCNA4,MPPED2"
TCGA.DM.A285	11	30028282	134944769	32519	0.094	NEUTRAL	NA	948	Too-Many
TCGA.AM.5821	11	30082006	134942625	32474	0.0107	NEUTRAL	NA	947	Too-Many
TCGA.AM.5820	11	30426236	46330982	5672	0.0307	NEUTRAL	NA	66	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,C11orf74,C11orf91,C11orf94,C11orf96,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CHST1,COMMD9,CREB3L1,CRY2,CSTF3,DCDC1,DCDC5,DEPDC7,DNAJC24,EHF,EIF3M,ELF5,ELP4,EXT2,FBXO3,FJX1,GYLTL1B,HIPK3,HSD17B12,IMMP1L,KIAA1549L,LDLRAD3,LMO2,LRRC4C,MAPK8IP1,MPPED2,NAT10,PAMR1,PAX6,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,SLC35C1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,WT1"
TCGA.AG.A01W.01A	11	30514118	32069363	78	0.2588	NEUTRAL	NA	7	"DCDC1,DCDC5,DNAJC24,ELP4,IMMP1L,MPPED2,PAX6"
TCGA.AA.3982	11	31066466	32300457	312	0.1817	NEUTRAL	NA	6	"DCDC1,DNAJC24,ELP4,IMMP1L,PAX6,RCN1"
TCGA.AA.3811	11	31082535	34174295	858	0.0618	NEUTRAL	NA	23	"ABTB2,C11orf91,CAPRIN1,CCDC73,CD59,CSTF3,DCDC1,DEPDC7,DNAJC24,EIF3M,ELP4,FBXO3,HIPK3,IMMP1L,KIAA1549L,LMO2,NAT10,PAX6,PRRG4,QSER1,RCN1,TCP11L1,WT1"
TCGA.AA.3941	11	31087792	36600231	2098	-0.2668	NEUTRAL	NA	38	"ABTB2,APIP,C11orf91,CAPRIN1,CAT,CCDC73,CD44,CD59,COMMD9,CSTF3,DCDC1,DEPDC7,DNAJC24,EHF,EIF3M,ELF5,ELP4,FBXO3,FJX1,HIPK3,IMMP1L,KIAA1549L,LDLRAD3,LMO2,NAT10,PAMR1,PAX6,PDHX,PRR5L,PRRG4,QSER1,RAG1,RCN1,SLC1A2,TCP11L1,TRAF6,TRIM44,WT1"
TCGA.D5.6930	11	31173242	134944769	32162	-0.0077	NEUTRAL	NA	943	Too-Many
TCGA.AA.A00D.01A	11	31312153	34938166	205	0.0358	NEUTRAL	NA	28	"ABTB2,APIP,C11orf91,CAPRIN1,CAT,CCDC73,CD59,CSTF3,DCDC1,DEPDC7,DNAJC24,EHF,EIF3M,ELF5,ELP4,FBXO3,HIPK3,IMMP1L,KIAA1549L,LMO2,NAT10,PAX6,PDHX,PRRG4,QSER1,RCN1,TCP11L1,WT1"
TCGA.CK.4952.01A	11	31768827	102519184	5096	-0.0706	NEUTRAL	NA	676	Too-Many
TCGA.AA.3850	11	31775395	32066780	102	0.13205	NEUTRAL	NA	2	"ELP4,PAX6"
TCGA.AA.3867	11	31796559	36963842	2161	0.2547	NEUTRAL	NA	37	"ABTB2,APIP,C11orf74,C11orf91,CAPRIN1,CAT,CCDC73,CD44,CD59,COMMD9,CSTF3,DEPDC7,EHF,EIF3M,ELF5,ELP4,FBXO3,FJX1,HIPK3,KIAA1549L,LDLRAD3,LMO2,NAT10,PAMR1,PAX6,PDHX,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,TCP11L1,TRAF6,TRIM44,WT1"
TCGA.AA.3844	11	31802356	36752331	2073	-0.0023	NEUTRAL	NA	37	"ABTB2,APIP,C11orf74,C11orf91,CAPRIN1,CAT,CCDC73,CD44,CD59,COMMD9,CSTF3,DEPDC7,EHF,EIF3M,ELF5,ELP4,FBXO3,FJX1,HIPK3,KIAA1549L,LDLRAD3,LMO2,NAT10,PAMR1,PAX6,PDHX,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,TCP11L1,TRAF6,TRIM44,WT1"
TCGA.AA.3509.01A	11	31804921	32617456	38	-0.283	NEUTRAL	NA	5	"EIF3M,ELP4,PAX6,RCN1,WT1"
TCGA.AZ.4684.01A	11	31804921	32617456	38	-0.1226	NEUTRAL	NA	5	"EIF3M,ELP4,PAX6,RCN1,WT1"
TCGA.AG.3611.01A	11	31811473	31823071	7	-0.2814	NEUTRAL	NA	1	PAX6
TCGA.CK.5914.01A	11	31814938	32452024	23	-0.3584	NEUTRAL	NA	3	"PAX6,RCN1,WT1"
TCGA.AG.A00Y.01A	11	31815525	44296859	424	0.0803	NEUTRAL	NA	46	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,C11orf74,C11orf91,C11orf96,CAPRIN1,CAT,CCDC73,CD44,CD59,COMMD9,CSTF3,DEPDC7,EHF,EIF3M,ELF5,EXT2,FBXO3,FJX1,HIPK3,HSD17B12,KIAA1549L,LDLRAD3,LMO2,LRRC4C,NAT10,PAMR1,PAX6,PDHX,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,TCP11L1,TRAF6,TRIM44,TTC17,WT1"
TCGA.AG.3909.01A	11	31824201	32450006	15	0.0467	NEUTRAL	NA	3	"PAX6,RCN1,WT1"
TCGA.AA.A010.01A	11	31824201	32462578	22	-0.2513	NEUTRAL	NA	3	"PAX6,RCN1,WT1"
TCGA.A6.3810.01A	11	31824201	48171455	964	-0.2835	NEUTRAL	NA	94	"ABTB2,ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,APIP,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf74,C11orf91,C11orf94,C11orf96,C1QTNF4,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CELF1,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,CSTF3,DDB2,DEPDC7,DGKZ,EHF,EIF3M,ELF5,EXT2,F2,FAM180B,FBXO3,FJX1,FNBP4,GYLTL1B,HARBI1,HIPK3,HSD17B12,KBTBD4,KIAA1549L,LDLRAD3,LMO2,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NAT10,NDUFS3,NR1H3,NUP160,PACSIN3,PAMR1,PAX6,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,PSMC3,PTPMT1,PTPRJ,QSER1,RAG1,RAG2,RAPSN,RCN1,SLC1A2,SLC35C1,SLC39A13,SPI1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,WT1,ZNF408"
TCGA.AG.3611.01A	11	31824201	48510307	829	0.2566	NEUTRAL	NA	100	"ABTB2,ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,APIP,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf74,C11orf91,C11orf94,C11orf96,C1QTNF4,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CELF1,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,CSTF3,DDB2,DEPDC7,DGKZ,EHF,EIF3M,ELF5,EXT2,F2,FAM180B,FBXO3,FJX1,FNBP4,GYLTL1B,HARBI1,HIPK3,HSD17B12,KBTBD4,KIAA1549L,LDLRAD3,LMO2,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NAT10,NDUFS3,NR1H3,NUP160,OR4B1,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PACSIN3,PAMR1,PAX6,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,PSMC3,PTPMT1,PTPRJ,QSER1,RAG1,RAG2,RAPSN,RCN1,SLC1A2,SLC35C1,SLC39A13,SPI1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,WT1,ZNF408"
TCGA.AA.3850	11	32070502	32088182	15	-0.06375	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	32075250	32395661	13	-0.2716	NEUTRAL	NA	1	RCN1
TCGA.AA.3850	11	32090553	32253285	81	0.31925	NEUTRAL	NA	1	RCN1
TCGA.AG.4009.01A	11	32118701	34139698	163	-0.0537	NEUTRAL	NA	17	"C11orf91,CAPRIN1,CCDC73,CD59,CSTF3,DEPDC7,EIF3M,FBXO3,HIPK3,KIAA1549L,LMO2,NAT10,PRRG4,QSER1,RCN1,TCP11L1,WT1"
TCGA.AF.3914.01A	11	32118701	45893591	473	0.0644	NEUTRAL	NA	53	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,C11orf74,C11orf91,C11orf96,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CHST1,COMMD9,CRY2,CSTF3,DEPDC7,EHF,EIF3M,ELF5,EXT2,FBXO3,FJX1,HIPK3,HSD17B12,KIAA1549L,LDLRAD3,LMO2,LRRC4C,NAT10,PAMR1,PDHX,PRDM11,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,SLC35C1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,WT1"
TCGA.D5.6534	11	32132670	37616054	2215	0.1964	NEUTRAL	NA	34	"ABTB2,APIP,C11orf74,C11orf91,CAPRIN1,CAT,CCDC73,CD44,CD59,COMMD9,CSTF3,DEPDC7,EHF,EIF3M,ELF5,FBXO3,FJX1,HIPK3,KIAA1549L,LDLRAD3,LMO2,NAT10,PAMR1,PDHX,PRR5L,PRRG4,QSER1,RAG1,RAG2,SLC1A2,TCP11L1,TRAF6,TRIM44,WT1"
TCGA.G4.6299	11	32239539	48303324	5443	-0.0578	NEUTRAL	NA	95	"ABTB2,ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,APIP,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf74,C11orf91,C11orf94,C11orf96,C1QTNF4,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CELF1,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,CSTF3,DDB2,DEPDC7,DGKZ,EHF,EIF3M,ELF5,EXT2,F2,FAM180B,FBXO3,FJX1,FNBP4,GYLTL1B,HARBI1,HIPK3,HSD17B12,KBTBD4,KIAA1549L,LDLRAD3,LMO2,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NAT10,NDUFS3,NR1H3,NUP160,OR4B1,OR4X1,OR4X2,PACSIN3,PAMR1,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,PSMC3,PTPMT1,PTPRJ,QSER1,RAG1,RAG2,RAPSN,SLC1A2,SLC35C1,SLC39A13,SPI1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,WT1,ZNF408"
TCGA.AA.3850	11	32271314	32300457	11	0.34015	NEUTRAL	NA	0	None
TCGA.AA.3850	11	32322196	34594610	754	0.33315	NEUTRAL	NA	19	"ABTB2,C11orf91,CAPRIN1,CAT,CCDC73,CD59,CSTF3,DEPDC7,EIF3M,ELF5,FBXO3,HIPK3,KIAA1549L,LMO2,NAT10,PRRG4,QSER1,TCP11L1,WT1"
TCGA.AG.A01W.01A	11	32406042	33752480	136	0.1245	NEUTRAL	NA	12	"C11orf91,CCDC73,CD59,CSTF3,DEPDC7,EIF3M,HIPK3,KIAA1549L,PRRG4,QSER1,TCP11L1,WT1"
TCGA.AA.A00F.01A	11	32410566	32605355	12	0.0676	NEUTRAL	NA	2	"EIF3M,WT1"
TCGA.AG.A00C.01A	11	32410566	32997860	56	0.001	NEUTRAL	NA	5	"CCDC73,EIF3M,PRRG4,QSER1,WT1"
TCGA.AA.A00N.01A	11	32622194	32781628	20	0.1801	NEUTRAL	NA	2	"CCDC73,EIF3M"
TCGA.CK.5914.01A	11	32623777	33037448	38	-0.0886	NEUTRAL	NA	5	"CCDC73,DEPDC7,EIF3M,PRRG4,QSER1"
TCGA.AG.3909.01A	11	32624305	32781628	16	0.3034	NEUTRAL	NA	2	"CCDC73,EIF3M"
TCGA.AA.A010.01A	11	32632627	32860351	19	0.1776	NEUTRAL	NA	2	"CCDC73,PRRG4"
TCGA.AZ.4684.01A	11	32674647	45955467	484	0.2272	NEUTRAL	NA	55	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,C11orf74,C11orf91,C11orf94,C11orf96,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CHST1,COMMD9,CRY2,CSTF3,DEPDC7,EHF,ELF5,EXT2,FBXO3,FJX1,GYLTL1B,HIPK3,HSD17B12,KIAA1549L,LDLRAD3,LMO2,LRRC4C,MAPK8IP1,NAT10,PAMR1,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,QSER1,RAG1,RAG2,SLC1A2,SLC35C1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17"
TCGA.AA.3509.01A	11	32674647	47594450	816	0.0456	NEUTRAL	NA	82	"ABTB2,ACCS,ACCSL,ACP2,ALKBH3,ALX4,AMBRA1,API5,APIP,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf74,C11orf91,C11orf94,C11orf96,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CELF1,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,CSTF3,DDB2,DEPDC7,DGKZ,EHF,ELF5,EXT2,F2,FBXO3,FJX1,GYLTL1B,HARBI1,HIPK3,HSD17B12,KBTBD4,KIAA1549L,LDLRAD3,LMO2,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MYBPC3,NAT10,NR1H3,PACSIN3,PAMR1,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,PSMC3,PTPMT1,QSER1,RAG1,RAG2,RAPSN,SLC1A2,SLC35C1,SLC39A13,SPI1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,ZNF408"
TCGA.A6.3808.01A	11	32781628	34113406	116	-0.2298	NEUTRAL	NA	13	"C11orf91,CAPRIN1,CCDC73,CD59,CSTF3,DEPDC7,FBXO3,HIPK3,KIAA1549L,LMO2,PRRG4,QSER1,TCP11L1"
TCGA.AA.3861.01A	11	32781628	47807957	847	-0.1852	NEUTRAL	NA	89	"ABTB2,ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,APIP,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf74,C11orf91,C11orf94,C11orf96,C1QTNF4,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CELF1,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,CSTF3,DDB2,DEPDC7,DGKZ,EHF,ELF5,EXT2,F2,FAM180B,FBXO3,FJX1,FNBP4,GYLTL1B,HARBI1,HIPK3,HSD17B12,KBTBD4,KIAA1549L,LDLRAD3,LMO2,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NAT10,NDUFS3,NR1H3,NUP160,PACSIN3,PAMR1,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,PSMC3,PTPMT1,QSER1,RAG1,RAG2,RAPSN,SLC1A2,SLC35C1,SLC39A13,SPI1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,ZNF408"
TCGA.AA.3862.01A	11	32781628	47807957	852	-0.0703	NEUTRAL	NA	89	"ABTB2,ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,APIP,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf74,C11orf91,C11orf94,C11orf96,C1QTNF4,CAPRIN1,CAT,CCDC73,CD44,CD59,CD82,CELF1,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,CSTF3,DDB2,DEPDC7,DGKZ,EHF,ELF5,EXT2,F2,FAM180B,FBXO3,FJX1,FNBP4,GYLTL1B,HARBI1,HIPK3,HSD17B12,KBTBD4,KIAA1549L,LDLRAD3,LMO2,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NAT10,NDUFS3,NR1H3,NUP160,PACSIN3,PAMR1,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PRRG4,PSMC3,PTPMT1,QSER1,RAG1,RAG2,RAPSN,SLC1A2,SLC35C1,SLC39A13,SPI1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,ZNF408"
TCGA.AA.A00N.01A	11	32874792	32956250	6	0.1222	NEUTRAL	NA	2	"PRRG4,QSER1"
TCGA.AG.3909.01A	11	32874792	32997860	15	0.2697	NEUTRAL	NA	2	"PRRG4,QSER1"
TCGA.AA.A00N.01A	11	32990545	33037448	5	0.1615	NEUTRAL	NA	2	"DEPDC7,QSER1"
TCGA.AA.A010.01A	11	33065278	33080454	5	-0.1401	NEUTRAL	NA	1	TCP11L1
TCGA.AG.3909.01A	11	33076091	33374634	39	0.2649	NEUTRAL	NA	3	"CSTF3,HIPK3,TCP11L1"
TCGA.CK.5914.01A	11	33078634	33127066	20	-0.3396	NEUTRAL	NA	2	"CSTF3,TCP11L1"
TCGA.AA.A00F.01A	11	33083024	33620319	40	0.1301	NEUTRAL	NA	4	"CSTF3,HIPK3,KIAA1549L,TCP11L1"
TCGA.AG.A00C.01A	11	33083024	47843577	796	-0.0457	NEUTRAL	NA	85	"ABTB2,ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,APIP,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf74,C11orf91,C11orf94,C11orf96,C1QTNF4,CAPRIN1,CAT,CD44,CD59,CD82,CELF1,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,CSTF3,DDB2,DGKZ,EHF,ELF5,EXT2,F2,FAM180B,FBXO3,FJX1,FNBP4,GYLTL1B,HARBI1,HIPK3,HSD17B12,KBTBD4,KIAA1549L,LDLRAD3,LMO2,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NAT10,NDUFS3,NR1H3,NUP160,PACSIN3,PAMR1,PDHX,PEX16,PHF21A,PRDM11,PRR5L,PSMC3,PTPMT1,RAG1,RAG2,RAPSN,SLC1A2,SLC35C1,SLC39A13,SPI1,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,ZNF408"
TCGA.AA.A010.01A	11	33124604	33363067	13	-0.2095	NEUTRAL	NA	2	"CSTF3,HIPK3"
TCGA.CK.5914.01A	11	33129401	33572536	22	0.149	NEUTRAL	NA	3	"CSTF3,HIPK3,KIAA1549L"
TCGA.G4.6306	11	33435124	134944769	31670	-0.0184	NEUTRAL	NA	928	Too-Many
TCGA.AG.3909.01A	11	33667235	33743868	8	0.1534	NEUTRAL	NA	3	"C11orf91,CD59,KIAA1549L"
TCGA.CK.5914.01A	11	33667235	34133572	39	-0.132	NEUTRAL	NA	7	"C11orf91,CAPRIN1,CD59,FBXO3,KIAA1549L,LMO2,NAT10"
TCGA.AA.A00L.01A	11	33790356	34073920	7	-0.4423	NEUTRAL	NA	3	"CAPRIN1,FBXO3,LMO2"
TCGA.AG.3909.01A	11	33795903	34130233	19	0.203	NEUTRAL	NA	4	"CAPRIN1,FBXO3,LMO2,NAT10"
TCGA.AG.A01W.01A	11	33837428	34111098	31	-0.2021	NEUTRAL	NA	2	"CAPRIN1,LMO2"
TCGA.AA.A00L.01A	11	34107563	34163217	30	0.1493	NEUTRAL	NA	2	"CAPRIN1,NAT10"
TCGA.AA.A00F.01A	11	34107563	46896960	481	0.1509	NEUTRAL	NA	55	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,AMBRA1,API5,APIP,ARHGAP1,ATG13,C11orf74,C11orf94,C11orf96,CAPRIN1,CAT,CD44,CD82,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,DGKZ,EHF,ELF5,EXT2,F2,FJX1,GYLTL1B,HARBI1,HSD17B12,LDLRAD3,LRP4,LRRC4C,MAPK8IP1,MDK,NAT10,PAMR1,PDHX,PEX16,PHF21A,PRDM11,PRR5L,RAG1,RAG2,SLC1A2,SLC35C1,SYT13,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,ZNF408"
TCGA.AA.A010.01A	11	34111689	45117303	306	0.3291	NEUTRAL	NA	33	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,C11orf74,C11orf96,CAPRIN1,CAT,CD44,CD82,COMMD9,EHF,ELF5,EXT2,FJX1,HSD17B12,LDLRAD3,LRRC4C,NAT10,PAMR1,PDHX,PRR5L,RAG1,RAG2,SLC1A2,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17"
TCGA.RU.A8FL	11	34113670	34916784	413	-0.456	NEUTRAL	NA	7	"ABTB2,APIP,CAPRIN1,CAT,EHF,ELF5,NAT10"
TCGA.AG.A01W.01A	11	34124158	44242964	244	0.0961	NEUTRAL	NA	28	"ABTB2,ACCS,ACCSL,ALKBH3,API5,APIP,C11orf74,C11orf96,CAT,CD44,COMMD9,EHF,ELF5,EXT2,FJX1,HSD17B12,LDLRAD3,LRRC4C,NAT10,PAMR1,PDHX,PRR5L,RAG1,RAG2,SLC1A2,TRAF6,TRIM44,TTC17"
TCGA.AG.4009.01A	11	34143954	34533022	53	0.2427	NEUTRAL	NA	4	"ABTB2,CAT,ELF5,NAT10"
TCGA.AA.A00J.01A	11	34154534	57085227	795	0.0066	NEUTRAL	NA	143	Too-Many
TCGA.CK.5914.01A	11	34163217	34533022	41	-0.2365	NEUTRAL	NA	4	"ABTB2,CAT,ELF5,NAT10"
TCGA.AG.3909.01A	11	34163762	34999599	59	-0.0732	NEUTRAL	NA	7	"ABTB2,APIP,CAT,EHF,ELF5,NAT10,PDHX"
TCGA.AA.A00L.01A	11	34175771	46564771	353	-0.0228	NEUTRAL	NA	46	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,AMBRA1,API5,APIP,C11orf74,C11orf94,C11orf96,CAT,CD44,CD82,CHRM4,CHST1,COMMD9,CREB3L1,CRY2,DGKZ,EHF,ELF5,EXT2,FJX1,GYLTL1B,HSD17B12,LDLRAD3,LRRC4C,MAPK8IP1,MDK,PAMR1,PDHX,PEX16,PHF21A,PRDM11,PRR5L,RAG1,RAG2,SLC1A2,SLC35C1,SYT13,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17"
TCGA.AA.A02K.01A	11	34189399	45893613	284	-0.2027	NEUTRAL	NA	36	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,C11orf74,C11orf96,CAT,CD44,CD82,CHST1,COMMD9,CRY2,EHF,ELF5,EXT2,FJX1,HSD17B12,LDLRAD3,LRRC4C,PAMR1,PDHX,PRDM11,PRR5L,RAG1,RAG2,SLC1A2,SLC35C1,SYT13,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17"
TCGA.AA.A01Q.01A	11	34194691	44296859	221	0.1735	NEUTRAL	NA	28	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,C11orf74,C11orf96,CAT,CD44,COMMD9,EHF,ELF5,EXT2,FJX1,HSD17B12,LDLRAD3,LRRC4C,PAMR1,PDHX,PRR5L,RAG1,RAG2,SLC1A2,TRAF6,TRIM44,TTC17"
TCGA.AA.3811	11	34370235	36618453	1156	0.0349	NEUTRAL	NA	18	"ABTB2,APIP,C11orf74,CAT,CD44,COMMD9,EHF,ELF5,FJX1,LDLRAD3,PAMR1,PDHX,PRR5L,RAG1,RAG2,SLC1A2,TRAF6,TRIM44"
TCGA.AA.3850	11	34602360	34675078	42	0.16985	NEUTRAL	NA	1	EHF
TCGA.AG.3731	11	34607889	34969639	199	0.3599	NEUTRAL	NA	3	"APIP,EHF,PDHX"
TCGA.AG.4009.01A	11	34664127	35250625	40	0.0054	NEUTRAL	NA	4	"APIP,CD44,EHF,PDHX"
TCGA.CK.5914.01A	11	34664127	43702327	154	0.3564	NEUTRAL	NA	19	"API5,APIP,C11orf74,CD44,COMMD9,EHF,FJX1,HSD17B12,LDLRAD3,LRRC4C,PAMR1,PDHX,PRR5L,RAG1,RAG2,SLC1A2,TRAF6,TRIM44,TTC17"
TCGA.AA.3850	11	34706223	34901122	94	-0.09545	NEUTRAL	NA	0	None
TCGA.AF.2693	11	34741787	35196410	233	-0.4737	NEUTRAL	NA	3	"APIP,CD44,PDHX"
TCGA.AA.3982	11	34888762	34909674	15	0.2681	NEUTRAL	NA	1	APIP
TCGA.AA.3982	11	34914359	35588907	401	0.1503	NEUTRAL	NA	5	"APIP,CD44,PAMR1,PDHX,SLC1A2"
TCGA.AA.3850	11	34914359	35834513	473	-0.00375	NEUTRAL	NA	7	"APIP,CD44,FJX1,PAMR1,PDHX,SLC1A2,TRIM44"
TCGA.RU.A8FL	11	34918374	38454420	1410	0.2366	NEUTRAL	NA	14	"APIP,C11orf74,CD44,COMMD9,FJX1,LDLRAD3,PAMR1,PDHX,PRR5L,RAG1,RAG2,SLC1A2,TRAF6,TRIM44"
TCGA.AG.3731	11	34975066	134944769	30984	0.0021	NEUTRAL	NA	916	Too-Many
TCGA.AA.A00D.01A	11	34988140	40137410	91	-0.2481	NEUTRAL	NA	14	"C11orf74,CD44,COMMD9,FJX1,LDLRAD3,LRRC4C,PAMR1,PDHX,PRR5L,RAG1,RAG2,SLC1A2,TRAF6,TRIM44"
TCGA.DM.A1HB	11	35196410	59032627	5568	-0.0187	NEUTRAL	NA	178	Too-Many
TCGA.AF.2693	11	35200915	55091267	4632	0.0248	NEUTRAL	NA	85	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf74,C11orf94,C11orf96,C1QTNF4,CD44,CD82,CELF1,CHRM4,CHST1,CKAP5,COMMD9,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FJX1,FNBP4,FOLH1,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LDLRAD3,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4A47,OR4A5,OR4B1,OR4C12,OR4C13,OR4C3,OR4C45,OR4C46,OR4S1,OR4X1,OR4X2,PACSIN3,PAMR1,PEX16,PHF21A,PRDM11,PRR5L,PSMC3,PTPMT1,PTPRJ,RAG1,RAG2,RAPSN,SLC1A2,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TRAF6,TRIM44,TRIM48,TRIM49B,TRIM64C,TSPAN18,TTC17,ZNF408"
TCGA.AG.4009.01A	11	35282388	35338874	10	0.2763	NEUTRAL	NA	1	SLC1A2
TCGA.AG.4009.01A	11	35453946	35640178	12	-0.0783	NEUTRAL	NA	2	"FJX1,PAMR1"
TCGA.AA.3982	11	35594633	35852468	68	0.1337	NEUTRAL	NA	2	"FJX1,TRIM44"
TCGA.AG.3909.01A	11	35640178	35706748	4	-0.4386	NEUTRAL	NA	2	"FJX1,TRIM44"
TCGA.AG.4009.01A	11	35706748	45117303	161	0.0938	NEUTRAL	NA	21	"ACCS,ACCSL,ALKBH3,ALX4,API5,C11orf74,C11orf96,CD82,COMMD9,EXT2,HSD17B12,LDLRAD3,LRRC4C,PRR5L,RAG1,RAG2,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17"
TCGA.AA.3850	11	35844929	36510617	355	0.27285	NEUTRAL	NA	4	"COMMD9,LDLRAD3,PRR5L,TRAF6"
TCGA.AA.3982	11	35853090	36600231	375	0.3289	NEUTRAL	NA	5	"COMMD9,LDLRAD3,PRR5L,RAG1,TRAF6"
TCGA.AG.3909.01A	11	36511338	45919588	169	0.1439	NEUTRAL	NA	23	"ACCS,ACCSL,ALKBH3,ALX4,API5,C11orf74,C11orf96,CD82,CHST1,CRY2,EXT2,HSD17B12,LRRC4C,MAPK8IP1,PRDM11,RAG1,RAG2,SLC35C1,SYT13,TP53I11,TRAF6,TSPAN18,TTC17"
TCGA.AA.3850	11	36513785	36600231	23	-0.00665	NEUTRAL	NA	2	"RAG1,TRAF6"
TCGA.AA.3982	11	36600515	36918596	136	-0.2111	NEUTRAL	NA	3	"C11orf74,RAG1,RAG2"
TCGA.AA.3811	11	36618674	43142228	2129	-0.463	NEUTRAL	NA	3	"C11orf74,LRRC4C,RAG2"
TCGA.AA.3850	11	36621594	36628603	6	-0.08815	NEUTRAL	NA	1	C11orf74
TCGA.A6.A56B	11	36634733	36658873	11	0.1535	NEUTRAL	NA	1	C11orf74
TCGA.AA.3850	11	36658873	37051497	155	-0.33395	NEUTRAL	NA	1	C11orf74
TCGA.AA.3488	11	36745880	37150669	176	0.0282	NEUTRAL	NA	0	None
TCGA.AA.3844	11	36757077	43287398	2125	-0.5015	NEUTRAL	NA	1	LRRC4C
TCGA.AA.3982	11	36937055	43242586	2036	-0.27	NEUTRAL	NA	1	LRRC4C
TCGA.AA.3867	11	36967259	42942711	1905	-0.1141	NEUTRAL	NA	1	LRRC4C
TCGA.AF.A56K	11	37080654	37184979	59	0.3472	NEUTRAL	NA	0	None
TCGA.AA.3488	11	37153879	47752774	3261	0.3101	NEUTRAL	NA	56	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,TTC17,ZNF408"
TCGA.AF.A56K	11	37189730	134944769	29808	-0.0376	NEUTRAL	NA	903	Too-Many
TCGA.AG.3881	11	37252049	41039509	1065	-0.3617	NEUTRAL	NA	1	LRRC4C
TCGA.AG.A02N	11	37258836	39514182	538	0.3472	NEUTRAL	NA	0	None
TCGA.NH.A6GC	11	37304102	37401615	27	0.3229	NEUTRAL	NA	0	None
TCGA.AG.3890	11	37400374	37616054	44	-0.3331	NEUTRAL	NA	0	None
TCGA.NH.A6GC	11	37426626	37767812	92	-0.2702	NEUTRAL	NA	0	None
TCGA.CK.5913	11	37427872	38250921	205	-0.3517	NEUTRAL	NA	0	None
TCGA.AG.3890	11	37623210	126934146	26380	0.0153	NEUTRAL	NA	873	Too-Many
TCGA.NH.A6GC	11	37768476	46256155	2927	0.1301	NEUTRAL	NA	23	"ACCS,ACCSL,ALKBH3,ALX4,API5,C11orf94,C11orf96,CD82,CHST1,CRY2,EXT2,GYLTL1B,HSD17B12,LRRC4C,MAPK8IP1,PEX16,PHF21A,PRDM11,SLC35C1,SYT13,TP53I11,TSPAN18,TTC17"
TCGA.CK.5913	11	38263887	134944769	29602	-0.0105	NEUTRAL	NA	903	Too-Many
TCGA.D5.6931	11	38269836	38758049	137	-0.3596	NEUTRAL	NA	0	None
TCGA.AF.6655	11	38346043	41743039	1068	-0.4771	NEUTRAL	NA	1	LRRC4C
TCGA.RU.A8FL	11	38458095	38461256	5	-0.5069	NEUTRAL	NA	0	None
TCGA.RU.A8FL	11	38468112	56256863	3660	0.1827	NEUTRAL	NA	111	Too-Many
TCGA.A6.6654	11	38758049	66329731	5874	-0.1019	NEUTRAL	NA	393	Too-Many
TCGA.D5.6931	11	38788614	134944769	29419	-0.0079	NEUTRAL	NA	903	Too-Many
TCGA.AA.3875	11	39241704	54934709	3167	0.1549	NEUTRAL	NA	72	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,FOLH1,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4A47,OR4A5,OR4B1,OR4C12,OR4C13,OR4C3,OR4C45,OR4C46,OR4S1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TRIM49B,TRIM64C,TSPAN18,TTC17,ZNF408"
TCGA.AG.A02N	11	39520460	134944769	29307	-0.0035	NEUTRAL	NA	903	Too-Many
TCGA.D5.6534	11	39852727	78364512	8349	0.0694	NEUTRAL	NA	555	Too-Many
TCGA.A6.4105	11	39981537	40702354	258	-0.4475	NEUTRAL	NA	1	LRRC4C
TCGA.A6.4105	11	40708558	134944769	28931	0.0153	NEUTRAL	NA	903	Too-Many
TCGA.AG.3881	11	41040490	51205161	2532	0.0257	NEUTRAL	NA	70	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,FOLH1,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4A47,OR4B1,OR4C12,OR4C13,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TRIM49B,TRIM64C,TSPAN18,TTC17,ZNF408"
TCGA.CM.6170	11	41175224	44171455	1115	0.0947	NEUTRAL	NA	9	"ACCS,ACCSL,ALKBH3,API5,C11orf96,EXT2,HSD17B12,LRRC4C,TTC17"
TCGA.AF.6655	11	41766542	48459589	2018	-0.0355	NEUTRAL	NA	63	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4B1,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,TTC17,ZNF408"
TCGA.D5.6536	11	42440335	43551571	404	-0.0049	NEUTRAL	NA	2	"API5,TTC17"
TCGA.CM.6172	11	42543008	42579350	11	-0.4788	NEUTRAL	NA	0	None
TCGA.CM.6172	11	42583695	58636665	2967	-0.0162	NEUTRAL	NA	160	Too-Many
TCGA.AA.3680	11	42704202	89962733	11451	0.0086	NEUTRAL	NA	592	Too-Many
TCGA.AA.3867	11	42947539	48260740	1535	0.2715	NEUTRAL	NA	58	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4B1,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,TTC17,ZNF408"
TCGA.AA.3811	11	43156911	43927289	236	0.0522	NEUTRAL	NA	4	"ALKBH3,API5,HSD17B12,TTC17"
TCGA.AA.3941	11	43242586	44267656	342	-0.3012	NEUTRAL	NA	8	"ACCS,ACCSL,ALKBH3,API5,C11orf96,EXT2,HSD17B12,TTC17"
TCGA.AA.3982	11	43242742	43855071	165	0.2878	NEUTRAL	NA	3	"API5,HSD17B12,TTC17"
TCGA.AA.3850	11	43275619	43821987	144	0.16825	NEUTRAL	NA	3	"API5,HSD17B12,TTC17"
TCGA.AA.3844	11	43290349	48293930	1413	0.1394	NEUTRAL	NA	60	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4B1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,TTC17,ZNF408"
TCGA.AA.A00D.01A	11	43333636	43411185	16	0.3045	NEUTRAL	NA	2	"API5,TTC17"
TCGA.AA.A00D.01A	11	43412968	55035811	546	-0.0266	NEUTRAL	NA	71	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,FOLH1,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4A47,OR4A5,OR4B1,OR4C12,OR4C13,OR4C3,OR4C45,OR4C46,OR4S1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TRIM48,TRIM49B,TRIM64C,TSPAN18,TTC17,ZNF408"
TCGA.D5.6536	11	43553885	56046899	1903	0.3662	NEUTRAL	NA	99	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,FOLH1,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5T1,OR5T2,OR5T3,OR5W2,OR8H2,OR8H3,OR8I2,OR8J3,OR8K5,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TRIM48,TRIM49B,TRIM51,TRIM64C,TSPAN18,ZNF408"
TCGA.CM.5349	11	43575765	134944769	27867	-0.4628	NEUTRAL	NA	900	Too-Many
TCGA.CK.5914.01A	11	43772404	43876223	9	-0.0824	NEUTRAL	NA	1	HSD17B12
TCGA.AA.3850	11	43867651	48260740	1242	0.32925	NEUTRAL	NA	56	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4B1,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,ZNF408"
TCGA.AA.3864	11	43867651	74046974	5810	0.1242	NEUTRAL	NA	504	Too-Many
TCGA.AA.3811	11	43928857	48199896	1194	0.3324	NEUTRAL	NA	54	"ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,ZNF408"
TCGA.A6.A56B	11	43934120	44246498	135	0.3182	NEUTRAL	NA	5	"ACCS,ACCSL,ALKBH3,C11orf96,EXT2"
TCGA.CK.5914.01A	11	44069585	45868719	81	0.0518	NEUTRAL	NA	12	"ACCS,ACCSL,ALX4,CD82,CHST1,CRY2,EXT2,PRDM11,SLC35C1,SYT13,TP53I11,TSPAN18"
TCGA.F4.6461	11	44146849	91782609	11486	-0.0209	NEUTRAL	NA	585	Too-Many
TCGA.AA.3982	11	44210638	44267656	19	-0.1133	NEUTRAL	NA	1	EXT2
TCGA.CM.6170	11	44244676	44668373	195	0.0165	NEUTRAL	NA	3	"ALX4,CD82,EXT2"
TCGA.AG.A01W.01A	11	44245574	45073880	25	-0.3481	NEUTRAL	NA	5	"ALX4,CD82,EXT2,TP53I11,TSPAN18"
TCGA.AA.3941	11	44280089	48205377	1047	1.00E-04	NEUTRAL	NA	49	"ACP2,AGBL2,ALX4,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,ZNF408"
TCGA.AG.A02X.01A	11	44626855	48366861	476	0.1167	NEUTRAL	NA	53	"ACP2,AGBL2,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4B1,OR4C3,OR4S1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,ZNF408"
TCGA.CM.6170	11	44669479	44723870	35	-0.4601	NEUTRAL	NA	0	None
TCGA.AF.2692	11	44701347	48380903	904	0.0629	NEUTRAL	NA	53	"ACP2,AGBL2,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C1QTNF4,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4B1,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,ZNF408"
TCGA.A6.6653	11	44710933	46330982	605	-0.0473	NEUTRAL	NA	13	"C11orf94,CHST1,CREB3L1,CRY2,GYLTL1B,MAPK8IP1,PEX16,PHF21A,PRDM11,SLC35C1,SYT13,TP53I11,TSPAN18"
TCGA.CM.6170	11	44724338	134944769	27401	0.0442	NEUTRAL	NA	892	Too-Many
TCGA.DC.6154	11	44849274	134944769	27269	0.3743	NEUTRAL	NA	892	Too-Many
TCGA.AA.A00Q.01A	11	44940717	46396125	89	-0.123	NEUTRAL	NA	14	"C11orf94,CHST1,CREB3L1,CRY2,DGKZ,GYLTL1B,MAPK8IP1,PEX16,PHF21A,PRDM11,SLC35C1,SYT13,TP53I11,TSPAN18"
TCGA.AG.A01W.01A	11	45182781	45850189	23	-0.1596	NEUTRAL	NA	4	"CHST1,PRDM11,SLC35C1,SYT13"
TCGA.AG.4009.01A	11	45226199	45882349	16	0.1911	NEUTRAL	NA	5	"CHST1,CRY2,PRDM11,SLC35C1,SYT13"
TCGA.AA.A01Q.01A	11	45265622	45893591	21	0.0691	NEUTRAL	NA	4	"CHST1,CRY2,SLC35C1,SYT13"
TCGA.AA.A00N.01A	11	45671281	45975028	55	-0.4257	NEUTRAL	NA	8	"C11orf94,CHST1,CRY2,GYLTL1B,MAPK8IP1,PEX16,PHF21A,SLC35C1"
TCGA.AG.3906.01A	11	45832286	45893591	11	0.2746	NEUTRAL	NA	2	"CRY2,SLC35C1"
TCGA.AG.3891.01A	11	45868719	47592976	350	0.2002	NEUTRAL	NA	32	"ACP2,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,CELF1,CHRM4,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,F2,GYLTL1B,HARBI1,LRP4,MADD,MAPK8IP1,MDK,MYBPC3,NR1H3,PACSIN3,PEX16,PHF21A,PSMC3,PTPMT1,RAPSN,SLC39A13,SPI1,ZNF408"
TCGA.CK.5914.01A	11	45877496	45959661	45	-0.4541	NEUTRAL	NA	6	"C11orf94,CRY2,GYLTL1B,MAPK8IP1,PEX16,PHF21A"
TCGA.AG.4009.01A	11	45883559	45893591	7	-0.4142	NEUTRAL	NA	1	CRY2
TCGA.AG.A01W.01A	11	45884650	46289110	39	0.0702	NEUTRAL	NA	6	"C11orf94,CRY2,GYLTL1B,MAPK8IP1,PEX16,PHF21A"
TCGA.A6.3808.01A	11	45893591	46387875	62	-0.271	NEUTRAL	NA	8	"C11orf94,CREB3L1,CRY2,DGKZ,GYLTL1B,MAPK8IP1,PEX16,PHF21A"
TCGA.AA.A01F.01A	11	45919588	45926260	8	0.1946	NEUTRAL	NA	1	MAPK8IP1
TCGA.AA.A01F.01A	11	45927150	46105656	34	-0.2435	NEUTRAL	NA	5	"C11orf94,GYLTL1B,MAPK8IP1,PEX16,PHF21A"
TCGA.AG.3906.01A	11	45931587	45967339	21	0.2553	NEUTRAL	NA	3	"GYLTL1B,PEX16,PHF21A"
TCGA.AA.A02K.01A	11	45932395	46329362	33	-0.2311	NEUTRAL	NA	4	"CREB3L1,GYLTL1B,PEX16,PHF21A"
TCGA.AG.3909.01A	11	45935318	46332531	35	0.2241	NEUTRAL	NA	4	"CREB3L1,GYLTL1B,PEX16,PHF21A"
TCGA.AG.A015.01A	11	45935629	57069911	511	-0.168	NEUTRAL	NA	104	Too-Many
TCGA.AG.4009.01A	11	45938935	46342228	32	-0.1788	NEUTRAL	NA	4	"CREB3L1,GYLTL1B,PEX16,PHF21A"
TCGA.AA.A010.01A	11	45938935	46354775	37	-0.4643	NEUTRAL	NA	5	"CREB3L1,DGKZ,GYLTL1B,PEX16,PHF21A"
TCGA.AF.3914.01A	11	45938935	57085227	547	-0.0327	NEUTRAL	NA	104	Too-Many
TCGA.AA.A01Q.01A	11	45947541	46354775	25	0.262	NEUTRAL	NA	4	"CREB3L1,DGKZ,GYLTL1B,PHF21A"
TCGA.AZ.4684.01A	11	45967339	47594450	329	0.0807	NEUTRAL	NA	28	"ACP2,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,CELF1,CHRM4,CKAP5,CREB3L1,DDB2,DGKZ,F2,HARBI1,KBTBD4,LRP4,MADD,MDK,MYBPC3,NR1H3,PACSIN3,PHF21A,PSMC3,PTPMT1,RAPSN,SLC39A13,SPI1,ZNF408"
TCGA.AG.3906.01A	11	45970376	46332531	14	-0.2097	NEUTRAL	NA	2	"CREB3L1,PHF21A"
TCGA.A6.A56B	11	46231997	46543523	33	0.1548	NEUTRAL	NA	5	"AMBRA1,CHRM4,CREB3L1,DGKZ,MDK"
TCGA.NH.A6GC	11	46260506	134944769	26799	-0.1207	NEUTRAL	NA	880	Too-Many
TCGA.AA.A02K.01A	11	46331494	46367020	8	0.2886	NEUTRAL	NA	2	"CREB3L1,DGKZ"
TCGA.AG.3906.01A	11	46333824	46399676	14	0.3194	NEUTRAL	NA	2	"CREB3L1,DGKZ"
TCGA.AG.A01W.01A	11	46375545	46521342	14	0.0365	NEUTRAL	NA	4	"AMBRA1,CHRM4,DGKZ,MDK"
TCGA.AA.A02K.01A	11	46387771	46399960	16	-0.2657	NEUTRAL	NA	1	DGKZ
TCGA.AA.3930.01A	11	46387875	46406668	20	-0.4573	NEUTRAL	NA	3	"CHRM4,DGKZ,MDK"
TCGA.AA.A01F.01A	11	46389182	46397816	9	0.1914	NEUTRAL	NA	1	DGKZ
TCGA.AA.3980.01A	11	46389494	46430015	18	-0.2798	NEUTRAL	NA	4	"AMBRA1,CHRM4,DGKZ,MDK"
TCGA.AG.4009.01A	11	46398595	46431776	9	-0.3186	NEUTRAL	NA	4	"AMBRA1,CHRM4,DGKZ,MDK"
TCGA.AA.A01F.01A	11	46399676	47376738	217	-0.2721	NEUTRAL	NA	20	"ACP2,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,CHRM4,CKAP5,DDB2,DGKZ,F2,HARBI1,LRP4,MADD,MDK,MYBPC3,NR1H3,PACSIN3,SPI1,ZNF408"
TCGA.AA.A01Q.01A	11	46404932	46419003	3	-0.0385	NEUTRAL	NA	3	"AMBRA1,CHRM4,MDK"
TCGA.AA.A02K.01A	11	46407021	46717479	48	-0.1601	NEUTRAL	NA	5	"AMBRA1,ARHGAP1,ATG13,CHRM4,HARBI1"
TCGA.A6.3808.01A	11	46419003	47380356	241	0.0783	NEUTRAL	NA	17	"ACP2,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,CKAP5,DDB2,F2,HARBI1,LRP4,MADD,MYBPC3,NR1H3,PACSIN3,SPI1,ZNF408"
TCGA.AA.A00Q.01A	11	46419003	57004239	436	-0.0617	NEUTRAL	NA	96	"ACP2,AGBL2,AMBRA1,APLNR,ARFGAP2,ARHGAP1,ATG13,C11orf49,C1QTNF4,CELF1,CKAP5,DDB2,F2,FAM180B,FNBP4,FOLH1,HARBI1,KBTBD4,LRP4,LRRC55,MADD,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PACSIN3,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC39A13,SPI1,TRIM48,TRIM49B,TRIM51,TRIM64C,ZNF408"
TCGA.AA.3930.01A	11	46419003	70263078	2742	0.1447	NEUTRAL	NA	434	Too-Many
TCGA.AM.5820	11	46422685	47157676	72	-0.1093	NEUTRAL	NA	9	"AMBRA1,ARHGAP1,ATG13,C11orf49,CKAP5,F2,HARBI1,LRP4,ZNF408"
TCGA.AG.3906.01A	11	46431776	46637096	19	-0.003	NEUTRAL	NA	2	"AMBRA1,HARBI1"
TCGA.AA.3980.01A	11	46431776	134257391	6697	0.0909	NEUTRAL	NA	876	Too-Many
TCGA.AG.4009.01A	11	46439426	46842683	98	0.1759	NEUTRAL	NA	7	"AMBRA1,ARHGAP1,ATG13,CKAP5,F2,HARBI1,ZNF408"
TCGA.A6.6653	11	46449652	90008162	10073	-0.0088	NEUTRAL	NA	566	Too-Many
TCGA.AA.A010.01A	11	46454985	46515633	5	-0.22	NEUTRAL	NA	1	AMBRA1
TCGA.AG.A01W.01A	11	46522038	46717109	50	-0.3313	NEUTRAL	NA	4	"AMBRA1,ARHGAP1,ATG13,HARBI1"
TCGA.AA.A00L.01A	11	46565492	46750163	47	0.2745	NEUTRAL	NA	6	"AMBRA1,ARHGAP1,ATG13,F2,HARBI1,ZNF408"
TCGA.F5.6813	11	46578399	56396019	904	-0.027	NEUTRAL	NA	88	"ACP2,AGBL2,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C1QTNF4,CELF1,CKAP5,DDB2,F2,FAM180B,FNBP4,FOLH1,HARBI1,KBTBD4,LRP4,MADD,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,PACSIN3,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC39A13,SPI1,TRIM48,TRIM49B,TRIM51,TRIM64C,ZNF408"
TCGA.AA.A01Q.01A	11	46625030	46742276	37	-0.0172	NEUTRAL	NA	5	"ARHGAP1,ATG13,F2,HARBI1,ZNF408"
TCGA.AA.A010.01A	11	46665820	46693747	16	0.1386	NEUTRAL	NA	1	ATG13
TCGA.AA.A02E.01A	11	46680891	73611268	2502	-0.355	NEUTRAL	NA	471	Too-Many
TCGA.AG.3906.01A	11	46686358	46842683	71	0.0238	NEUTRAL	NA	5	"ARHGAP1,ATG13,CKAP5,F2,ZNF408"
TCGA.CK.5914.01A	11	46690947	46744713	23	-0.2788	NEUTRAL	NA	4	"ARHGAP1,ATG13,F2,ZNF408"
TCGA.AA.A02K.01A	11	46724518	55029680	380	-0.1784	NEUTRAL	NA	42	"ACP2,AGBL2,ARFGAP2,C11orf49,C1QTNF4,CELF1,CKAP5,DDB2,F2,FAM180B,FNBP4,FOLH1,KBTBD4,LRP4,MADD,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4A47,OR4A5,OR4B1,OR4C12,OR4C13,OR4C3,OR4C45,OR4C46,OR4S1,OR4X1,OR4X2,PACSIN3,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC39A13,SPI1,TRIM48,TRIM49B,TRIM64C,ZNF408"
TCGA.AG.A00H.01A	11	46725872	47303099	134	0.066	NEUTRAL	NA	11	"ACP2,ARFGAP2,C11orf49,CKAP5,DDB2,F2,LRP4,MADD,NR1H3,PACSIN3,ZNF408"
TCGA.AG.A01W.01A	11	46738701	46871069	50	-0.0389	NEUTRAL	NA	2	"CKAP5,F2"
TCGA.AA.A01Q.01A	11	46744713	46839811	44	0.3466	NEUTRAL	NA	2	"CKAP5,F2"
TCGA.AA.A00L.01A	11	46750940	46907586	57	-0.0142	NEUTRAL	NA	3	"CKAP5,F2,LRP4"
TCGA.AA.A010.01A	11	46760532	46842683	39	0.0638	NEUTRAL	NA	2	"CKAP5,F2"
TCGA.CK.5914.01A	11	46798937	46831240	15	0.1346	NEUTRAL	NA	1	CKAP5
TCGA.A6.A56B	11	46821077	50520258	477	0.3384	NEUTRAL	NA	37	"ACP2,AGBL2,ARFGAP2,C11orf49,C1QTNF4,CELF1,CKAP5,DDB2,FAM180B,FNBP4,FOLH1,KBTBD4,LRP4,MADD,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4A47,OR4B1,OR4C12,OR4C13,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PACSIN3,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC39A13,SPI1,TRIM49B,TRIM64C"
TCGA.CK.5914.01A	11	46832507	46886602	8	-0.1649	NEUTRAL	NA	2	"CKAP5,LRP4"
TCGA.AA.A01Q.01A	11	46842683	47159157	37	-0.0317	NEUTRAL	NA	3	"C11orf49,CKAP5,LRP4"
TCGA.AG.3906.01A	11	46880483	46903205	15	0.2841	NEUTRAL	NA	1	LRP4
TCGA.AG.4009.01A	11	46880483	46910915	18	-0.4187	NEUTRAL	NA	1	LRP4
TCGA.AA.A00F.01A	11	46897980	46903205	4	-0.1734	NEUTRAL	NA	1	LRP4
TCGA.AA.A00F.01A	11	46905385	47843577	199	0.2886	NEUTRAL	NA	23	"ACP2,AGBL2,ARFGAP2,C11orf49,C1QTNF4,CELF1,DDB2,FAM180B,FNBP4,KBTBD4,LRP4,MADD,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,PACSIN3,PSMC3,PTPMT1,RAPSN,SLC39A13,SPI1"
TCGA.AA.A00L.01A	11	46910915	46924303	15	-0.452	NEUTRAL	NA	1	LRP4
TCGA.AG.3909.01A	11	46911503	47178557	20	-0.0327	NEUTRAL	NA	2	"C11orf49,LRP4"
TCGA.CK.5914.01A	11	46911503	47305697	74	-0.3204	NEUTRAL	NA	8	"ACP2,ARFGAP2,C11orf49,DDB2,LRP4,MADD,NR1H3,PACSIN3"
TCGA.AG.A011.01A	11	46911503	64888933	1481	0.0699	NEUTRAL	NA	298	Too-Many
TCGA.AG.A01W.01A	11	46914860	47157529	25	0.0765	NEUTRAL	NA	2	"C11orf49,LRP4"
TCGA.AG.4009.01A	11	46958283	47187780	12	0.1328	NEUTRAL	NA	2	"ARFGAP2,C11orf49"
TCGA.AG.3906.01A	11	46958283	47362467	87	0.2578	NEUTRAL	NA	8	"ACP2,ARFGAP2,C11orf49,DDB2,MADD,MYBPC3,NR1H3,PACSIN3"
TCGA.AA.A00L.01A	11	46958283	59522993	510	0.0159	NEUTRAL	NA	142	Too-Many
TCGA.AA.A010.01A	11	47008721	47187780	11	-0.1332	NEUTRAL	NA	2	"ARFGAP2,C11orf49"
TCGA.AM.5820	11	47162603	47315273	26	0.2473	NEUTRAL	NA	7	"ACP2,ARFGAP2,C11orf49,DDB2,MADD,NR1H3,PACSIN3"
TCGA.AA.A01Q.01A	11	47176673	47201700	21	-0.4985	NEUTRAL	NA	3	"ARFGAP2,C11orf49,PACSIN3"
TCGA.AG.4009.01A	11	47188313	47204005	13	-0.3526	NEUTRAL	NA	2	"ARFGAP2,PACSIN3"
TCGA.AG.3909.01A	11	47198038	47238402	10	-0.0468	NEUTRAL	NA	3	"ARFGAP2,DDB2,PACSIN3"
TCGA.AA.A01Q.01A	11	47201997	47282755	21	0.0663	NEUTRAL	NA	4	"ACP2,DDB2,NR1H3,PACSIN3"
TCGA.AA.A010.01A	11	47236639	47281345	17	0.3295	NEUTRAL	NA	3	"ACP2,DDB2,NR1H3"
TCGA.AG.4009.01A	11	47236639	47281345	17	0.2277	NEUTRAL	NA	3	"ACP2,DDB2,NR1H3"
TCGA.AG.A01W.01A	11	47246010	47257069	9	0.3686	NEUTRAL	NA	1	DDB2
TCGA.AA.A029.01A	11	47256087	64883912	1387	-0.3629	NEUTRAL	NA	293	Too-Many
TCGA.AG.A01W.01A	11	47259651	47262274	4	-0.2936	NEUTRAL	NA	2	"ACP2,DDB2"
TCGA.AG.A01W.01A	11	47263032	47311669	26	0.2417	NEUTRAL	NA	3	"ACP2,MADD,NR1H3"
TCGA.AG.4009.01A	11	47281932	47289768	5	-0.3655	NEUTRAL	NA	1	NR1H3
TCGA.AA.A010.01A	11	47281932	47360049	47	-0.1642	NEUTRAL	NA	3	"MADD,MYBPC3,NR1H3"
TCGA.AG.3909.01A	11	47283421	47303099	11	-0.4449	NEUTRAL	NA	2	"MADD,NR1H3"
TCGA.AG.4009.01A	11	47303099	47317431	15	-0.2478	NEUTRAL	NA	1	MADD
TCGA.AA.A00N.01A	11	47303890	47310924	8	-0.2357	NEUTRAL	NA	1	MADD
TCGA.AA.A01Q.01A	11	47303890	47345756	21	-0.2285	NEUTRAL	NA	1	MADD
TCGA.AG.A00H.01A	11	47305697	110479642	3960	0.0123	NEUTRAL	NA	640	Too-Many
TCGA.AA.A02H.01A	11	47306980	47317431	10	-0.2283	NEUTRAL	NA	1	MADD
TCGA.AA.A00N.01A	11	47311376	47353606	18	0.2523	NEUTRAL	NA	2	"MADD,MYBPC3"
TCGA.AG.A01W.01A	11	47313122	47426850	46	-0.2142	NEUTRAL	NA	3	"MADD,MYBPC3,SPI1"
TCGA.AM.5820	11	47320984	47339168	5	-0.3752	NEUTRAL	NA	1	MADD
TCGA.AG.4009.01A	11	47330094	47372753	27	0.1511	NEUTRAL	NA	2	"MADD,MYBPC3"
TCGA.AA.A02H.01A	11	47333236	47600393	52	-0.0171	NEUTRAL	NA	9	"CELF1,KBTBD4,MADD,MYBPC3,PSMC3,PTPMT1,RAPSN,SLC39A13,SPI1"
TCGA.CK.5914.01A	11	47345173	47470325	56	-0.325	NEUTRAL	NA	6	"MADD,MYBPC3,PSMC3,RAPSN,SLC39A13,SPI1"
TCGA.AA.A01Q.01A	11	47354090	47399785	9	0.2413	NEUTRAL	NA	2	"MYBPC3,SPI1"
TCGA.AA.A00N.01A	11	47360815	47399785	19	0.1094	NEUTRAL	NA	2	"MYBPC3,SPI1"
TCGA.AG.4009.01A	11	47397137	47446660	12	0.0129	NEUTRAL	NA	3	"PSMC3,SLC39A13,SPI1"
TCGA.AG.3725	11	47404313	134944769	26660	0	NEUTRAL	NA	859	Too-Many
TCGA.AA.A01F.01A	11	47431619	47440355	7	-0.0899	NEUTRAL	NA	2	"PSMC3,SLC39A13"
TCGA.AA.A00N.01A	11	47431619	47447372	14	-0.4499	NEUTRAL	NA	2	"PSMC3,SLC39A13"
TCGA.A6.3808.01A	11	47431619	47640341	47	0.0205	NEUTRAL	NA	10	"C1QTNF4,CELF1,FAM180B,KBTBD4,MTCH2,NDUFS3,PSMC3,PTPMT1,RAPSN,SLC39A13"
TCGA.AM.5820	11	47442892	49945281	322	0.009	NEUTRAL	NA	23	"AGBL2,C1QTNF4,CELF1,FAM180B,FNBP4,FOLH1,KBTBD4,MTCH2,NDUFS3,NUP160,OR4A47,OR4B1,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PSMC3,PTPMT1,PTPRJ,RAPSN,TRIM49B,TRIM64C"
TCGA.AA.A01Q.01A	11	47447692	47510337	20	0.1864	NEUTRAL	NA	3	"CELF1,PSMC3,RAPSN"
TCGA.AA.A010.01A	11	47447692	47587188	21	0.122	NEUTRAL	NA	4	"CELF1,PSMC3,PTPMT1,RAPSN"
TCGA.AG.A01W.01A	11	47450312	47596906	28	0.0478	NEUTRAL	NA	4	"CELF1,KBTBD4,PTPMT1,RAPSN"
TCGA.AG.3906.01A	11	47462648	47591205	19	0.1134	NEUTRAL	NA	3	"CELF1,PTPMT1,RAPSN"
TCGA.AG.4009.01A	11	47493735	47587188	13	0.0489	NEUTRAL	NA	2	"CELF1,PTPMT1"
TCGA.AA.A01F.01A	11	47493735	47861903	81	-0.2452	NEUTRAL	NA	10	"AGBL2,C1QTNF4,CELF1,FAM180B,FNBP4,KBTBD4,MTCH2,NDUFS3,NUP160,PTPMT1"
TCGA.AA.3509.01A	11	47597095	47640341	9	-0.3245	NEUTRAL	NA	5	"C1QTNF4,FAM180B,KBTBD4,MTCH2,NDUFS3"
TCGA.AZ.4684.01A	11	47597095	47840872	76	-0.4017	NEUTRAL	NA	8	"AGBL2,C1QTNF4,FAM180B,FNBP4,KBTBD4,MTCH2,NDUFS3,NUP160"
TCGA.AG.3909.01A	11	47600393	47843577	74	0.2125	NEUTRAL	NA	8	"AGBL2,C1QTNF4,FAM180B,FNBP4,KBTBD4,MTCH2,NDUFS3,NUP160"
TCGA.AG.A01W.01A	11	47600801	47688455	27	-0.5008	NEUTRAL	NA	5	"AGBL2,C1QTNF4,FAM180B,MTCH2,NDUFS3"
TCGA.AA.A02H.01A	11	47602025	47834829	66	-0.4243	NEUTRAL	NA	7	"AGBL2,C1QTNF4,FAM180B,FNBP4,MTCH2,NDUFS3,NUP160"
TCGA.CK.5914.01A	11	47611333	47720951	25	-0.0412	NEUTRAL	NA	3	"AGBL2,C1QTNF4,MTCH2"
TCGA.AG.3891.01A	11	47611333	48181435	95	0.3398	NEUTRAL	NA	6	"AGBL2,C1QTNF4,FNBP4,MTCH2,NUP160,PTPRJ"
TCGA.AG.4009.01A	11	47611333	48266657	100	0.1741	NEUTRAL	NA	8	"AGBL2,C1QTNF4,FNBP4,MTCH2,NUP160,OR4B1,OR4X2,PTPRJ"
TCGA.AA.A01Q.01A	11	47611333	57004239	174	0.0916	NEUTRAL	NA	71	"AGBL2,APLNR,C1QTNF4,FNBP4,FOLH1,LRRC55,MTCH2,NUP160,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PTPRJ,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AG.3906.01A	11	47647168	48185880	94	0.2768	NEUTRAL	NA	5	"AGBL2,FNBP4,MTCH2,NUP160,PTPRJ"
TCGA.AA.A010.01A	11	47652059	47657024	5	-0.2738	NEUTRAL	NA	1	MTCH2
TCGA.AA.A00N.01A	11	47663884	47869362	65	-0.1507	NEUTRAL	NA	4	"AGBL2,FNBP4,MTCH2,NUP160"
TCGA.A6.3808.01A	11	47663884	51515235	120	-0.141	NEUTRAL	NA	18	"AGBL2,FNBP4,FOLH1,MTCH2,NUP160,OR4A47,OR4A5,OR4B1,OR4C12,OR4C13,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PTPRJ,TRIM49B,TRIM64C"
TCGA.AG.A01W.01A	11	47692344	47712137	10	-0.0342	NEUTRAL	NA	1	AGBL2
TCGA.AA.3509.01A	11	47703471	48238325	81	-0.3202	NEUTRAL	NA	4	"AGBL2,FNBP4,NUP160,PTPRJ"
TCGA.AG.A01W.01A	11	47743386	56512935	163	0.0908	NEUTRAL	NA	65	"FNBP4,FOLH1,NUP160,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PTPRJ,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AA.A01I.01A	11	47745533	57089225	174	0.0174	NEUTRAL	NA	69	"APLNR,FNBP4,FOLH1,LRRC55,NUP160,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PTPRJ,TNKS1BP1,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AA.3488	11	47773517	106233169	15721	0.0095	NEUTRAL	NA	606	Too-Many
TCGA.CK.5914.01A	11	47809705	47859040	23	7.00E-04	NEUTRAL	NA	1	NUP160
TCGA.AA.A02H.01A	11	47837024	48181435	32	-0.0381	NEUTRAL	NA	2	"NUP160,PTPRJ"
TCGA.AG.A01J.01A	11	47840872	62334820	751	-0.0011	NEUTRAL	NA	183	Too-Many
TCGA.AZ.4684.01A	11	47843239	48266657	33	0.0509	NEUTRAL	NA	4	"NUP160,OR4B1,OR4X2,PTPRJ"
TCGA.AG.3909.01A	11	47857151	47869753	7	-0.3984	NEUTRAL	NA	1	NUP160
TCGA.AG.A00C.01A	11	47869753	55606196	75	-0.2173	NEUTRAL	NA	30	"FOLH1,NUP160,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5D13,OR5D14,OR5D18,OR5L1,OR5L2,PTPRJ,TRIM48,TRIM49B,TRIM64C"
TCGA.AA.A00F.01A	11	47869753	57004239	113	0.0516	NEUTRAL	NA	67	"APLNR,FOLH1,LRRC55,NUP160,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PTPRJ,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AY.4071	11	48011368	134944769	26483	-0.2017	NEUTRAL	NA	846	Too-Many
TCGA.A6.5661	11	48054793	60559804	1862	0.1471	NEUTRAL	NA	138	Too-Many
TCGA.AA.A01F.01A	11	48142538	60636571	432	-0.3178	NEUTRAL	NA	141	Too-Many
TCGA.AG.3891.01A	11	48184970	56467852	93	-0.2935	NEUTRAL	NA	60	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,PTPRJ,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AA.A02H.01A	11	48184970	56756342	92	0.3441	NEUTRAL	NA	63	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PTPRJ,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.A6.3810.01A	11	48185880	57004239	101	-0.1209	NEUTRAL	NA	66	"APLNR,FOLH1,LRRC55,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PTPRJ,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AG.3906.01A	11	48188709	56954727	97	-0.1887	NEUTRAL	NA	65	"FOLH1,LRRC55,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PTPRJ,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AG.3909.01A	11	48188709	57004239	99	0.2549	NEUTRAL	NA	66	"APLNR,FOLH1,LRRC55,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,PTPRJ,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AA.3811	11	48203983	48293930	38	0.0221	NEUTRAL	NA	3	"OR4B1,OR4X1,OR4X2"
TCGA.AA.3941	11	48218483	48268481	19	-0.2803	NEUTRAL	NA	2	"OR4B1,OR4X2"
TCGA.AA.3867	11	48268481	56603001	726	-0.0373	NEUTRAL	NA	60	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AA.3982	11	48269263	56840988	791	-0.413	NEUTRAL	NA	61	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AG.4009.01A	11	48285375	49227590	23	-0.1719	NEUTRAL	NA	8	"FOLH1,OR4A47,OR4C3,OR4C45,OR4S1,OR4X1,TRIM49B,TRIM64C"
TCGA.AA.3811	11	48297664	56603001	709	-0.478	NEUTRAL	NA	59	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.G4.6299	11	48319805	48430399	9	0.2466	NEUTRAL	NA	3	"OR4C3,OR4C45,OR4S1"
TCGA.AG.A02X.01A	11	48373685	72945193	2246	-0.4339	NEUTRAL	NA	428	Too-Many
TCGA.AF.2692	11	48430399	88642080	9579	-0.412	NEUTRAL	NA	516	Too-Many
TCGA.AF.6655	11	48463393	49033762	52	-0.4254	NEUTRAL	NA	1	OR4A47
TCGA.AG.A00Y.01A	11	48510307	56950048	88	-0.3262	NEUTRAL	NA	58	"FOLH1,LRRC55,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.DY.A1DC	11	48929920	50474277	172	0.0023	NEUTRAL	NA	5	"FOLH1,OR4C12,OR4C13,TRIM49B,TRIM64C"
TCGA.AF.6655	11	49034632	96909502	12207	-0.0179	NEUTRAL	NA	560	Too-Many
TCGA.CK.5914.01A	11	49204661	49227590	6	-0.4713	NEUTRAL	NA	1	FOLH1
TCGA.AG.4009.01A	11	49229803	55339552	14	0.2475	NEUTRAL	NA	9	"FOLH1,OR4A15,OR4A16,OR4A5,OR4C12,OR4C13,OR4C15,OR4C46,TRIM48"
TCGA.AG.4015	11	49520944	50751357	119	-0.4237	NEUTRAL	NA	2	"OR4C12,OR4C13"
TCGA.DM.A1D0	11	49571230	62448575	2152	0.0083	NEUTRAL	NA	183	Too-Many
TCGA.DC.6160.01A	11	49959645	133762601	6356	-0.4541	NEUTRAL	NA	826	Too-Many
TCGA.AA.A010.01A	11	49973928	56756342	67	-0.0588	NEUTRAL	NA	52	"OR10AG1,OR4A15,OR4A16,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM51"
TCGA.AM.5820	11	49977366	50222686	34	-0.506	NEUTRAL	NA	1	OR4C12
TCGA.AG.A020	11	50124060	50141310	9	-0.1692	NEUTRAL	NA	0	None
TCGA.AM.5820	11	50234121	59223387	1198	0.0557	NEUTRAL	NA	99	"APLNR,BTBD18,C11orf31,CLP1,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GLYAT,GLYATL1,GLYATL2,LPXN,LRRC55,MED19,MPEG1,OR10AG1,OR10Q1,OR10W1,OR1S1,OR1S2,OR4A15,OR4A16,OR4A5,OR4C11,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,OR5A1,OR5A2,OR5AK2,OR5AN1,OR5AP2,OR5AR1,OR5AS1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR6Q1,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,OR9I1,OR9Q1,OR9Q2,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,TRIM48,TRIM51,UBE2L6,YPEL4,ZDHHC5,ZFP91"
TCGA.AF.A56N	11	50300220	51267020	39	-0.3411	NEUTRAL	NA	0	None
TCGA.A6.A56B	11	50523889	65460956	2531	0.0081	NEUTRAL	NA	283	Too-Many
TCGA.AD.6888	11	50523889	134944769	26277	-0.0119	NEUTRAL	NA	833	Too-Many
TCGA.AF.6136	11	50750723	76712614	5060	-0.3822	NEUTRAL	NA	464	Too-Many
TCGA.AG.A020	11	51192869	56239957	360	-0.0939	NEUTRAL	NA	41	"OR10AG1,OR4A15,OR4A16,OR4A5,OR4C11,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M3,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,TRIM48,TRIM51"
TCGA.DT.5265	11	51192869	61286691	1730	-0.4963	NEUTRAL	NA	149	Too-Many
TCGA.A6.2678	11	51192869	134944769	26285	0.0241	NEUTRAL	NA	833	Too-Many
TCGA.AG.4015	11	51192869	134944769	26209	0.0039	NEUTRAL	NA	833	Too-Many
TCGA.AG.3881	11	51221601	55506547	153	-0.3936	NEUTRAL	NA	11	"OR4A15,OR4A16,OR4A5,OR4C11,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,TRIM48"
TCGA.EI.7004	11	51267020	51492587	28	-0.0102	NEUTRAL	NA	1	OR4A5
TCGA.DY.A1DC	11	51267020	51563635	31	0.0623	NEUTRAL	NA	2	"OR4A5,OR4C46"
TCGA.AF.A56N	11	51267671	134944769	26222	-0.0092	NEUTRAL	NA	833	Too-Many
TCGA.EI.7004	11	51503004	57597273	690	-0.3969	NEUTRAL	NA	72	"APLNR,BTBD18,C11orf31,CLP1,CTNND1,LRRC55,MED19,OR10AG1,OR4A15,OR4A16,OR4C11,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,TRIM48,TRIM51,UBE2L6,YPEL4,ZDHHC5"
TCGA.G5.6233	11	51538029	134944769	26256	0	NEUTRAL	NA	831	Too-Many
TCGA.AA.3989	11	54835634	100217434	13250	0.0132	NEUTRAL	NA	554	Too-Many
TCGA.DY.A0XA	11	54858307	77641464	5205	-0.3407	NEUTRAL	NA	473	Too-Many
TCGA.AA.3530	11	54858307	134944769	26194	0.0376	NEUTRAL	NA	831	Too-Many
TCGA.DY.A1DC	11	54935588	56211772	304	-0.0391	NEUTRAL	NA	37	"OR10AG1,OR4A15,OR4A16,OR4C11,OR4C15,OR4C16,OR4C6,OR4P4,OR4S2,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,TRIM48,TRIM51"
TCGA.AA.3875	11	54935588	134944769	26263	-0.1752	NEUTRAL	NA	831	Too-Many
TCGA.AY.A71X	11	55030214	68729544	2928	-0.4591	NEUTRAL	NA	376	Too-Many
TCGA.AA.A02K.01A	11	55032510	55036666	4	0.3184	NEUTRAL	NA	1	TRIM48
TCGA.EI.6509	11	55084192	55608260	126	0.0202	NEUTRAL	NA	14	"OR4A15,OR4A16,OR4C11,OR4C15,OR4C16,OR4C6,OR4P4,OR4S2,OR5D13,OR5D14,OR5D16,OR5D18,OR5L1,OR5L2"
TCGA.AF.2693	11	55093882	134944769	26229	-0.3844	NEUTRAL	NA	830	Too-Many
TCGA.AA.A02K.01A	11	55110641	58352256	247	-0.0927	NEUTRAL	NA	85	"APLNR,BTBD18,C11orf31,CLP1,CTNND1,LPXN,LRRC55,MED19,OR10AG1,OR10Q1,OR10W1,OR1S1,OR1S2,OR4A15,OR4A16,OR4C11,OR4C15,OR4C16,OR4C6,OR4P4,OR4S2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR6Q1,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,OR9I1,OR9Q1,OR9Q2,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,TRIM51,UBE2L6,YPEL4,ZDHHC5,ZFP91"
TCGA.CK.5914.01A	11	55135318	55652993	17	0.2657	NEUTRAL	NA	14	"OR4A15,OR4C11,OR4C15,OR4C16,OR4C6,OR4P4,OR4S2,OR5D13,OR5D14,OR5D16,OR5D18,OR5L1,OR5L2,TRIM51"
TCGA.CL.4957	11	55312532	134944769	26180	-0.3906	NEUTRAL	NA	828	Too-Many
TCGA.AG.4009.01A	11	55370907	55418392	4	-0.5025	NEUTRAL	NA	3	"OR4C11,OR4P4,OR4S2"
TCGA.AG.4009.01A	11	55432631	56510296	48	0.1744	NEUTRAL	NA	39	"OR10AG1,OR4C6,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G9,TRIM51"
TCGA.AG.3881	11	55508166	57480622	556	0.0081	NEUTRAL	NA	59	"APLNR,CLP1,LRRC55,MED19,OR10AG1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,TRIM51,UBE2L6,YPEL4,ZDHHC5"
TCGA.5M.AAT4	11	55590295	134944769	26106	0.1071	NEUTRAL	NA	818	Too-Many
TCGA.AG.A00C.01A	11	55652993	55657367	5	0.3408	NEUTRAL	NA	1	TRIM51
TCGA.AA.A00D.01A	11	55652993	57575595	160	0.0109	NEUTRAL	NA	56	"APLNR,BTBD18,C11orf31,CLP1,CTNND1,LRRC55,MED19,OR10AG1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5F1,OR5I1,OR5J2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,TRIM51,UBE2L6,YPEL4,ZDHHC5"
TCGA.CK.5914.01A	11	55653619	57003309	44	0.0541	NEUTRAL	NA	36	"APLNR,LRRC55,OR10AG1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5F1,OR5I1,OR5J2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM51"
TCGA.A6.3808.01A	11	55657367	57004239	42	-0.272	NEUTRAL	NA	36	"APLNR,LRRC55,OR10AG1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5F1,OR5I1,OR5J2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM51"
TCGA.AG.A00C.01A	11	55681132	57004239	41	-0.2218	NEUTRAL	NA	35	"APLNR,LRRC55,OR10AG1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5F1,OR5I1,OR5J2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9"
TCGA.CK.6748	11	55746635	134944769	26023	-0.4343	NEUTRAL	NA	812	Too-Many
TCGA.G4.6299	11	55864160	56920689	310	0.3177	NEUTRAL	NA	27	"OR5AK2,OR5AP2,OR5AR1,OR5J2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR8H1,OR8H2,OR8H3,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9"
TCGA.AA.A01D.01A	11	55904237	67225825	1492	-0.4544	NEUTRAL	NA	327	Too-Many
TCGA.DY.A1DC	11	56242353	80941619	6269	-0.0282	NEUTRAL	NA	444	Too-Many
TCGA.AG.A020	11	56248135	65302440	2149	-0.112	NEUTRAL	NA	233	Too-Many
TCGA.RU.A8FL	11	56261868	134944769	25904	-0.0971	NEUTRAL	NA	791	Too-Many
TCGA.AG.3891.01A	11	56508443	61725601	604	0.0527	NEUTRAL	NA	109	Too-Many
TCGA.AA.3845	11	56510219	57957021	414	-0.492	NEUTRAL	NA	27	"APLNR,BTBD18,C11orf31,CLP1,CTNND1,LRRC55,MED19,OR5AK2,OR6Q1,OR9G4,OR9I1,OR9Q1,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5"
TCGA.AA.3844	11	56622716	60456898	1047	-0.1403	NEUTRAL	NA	72	"APLNR,BTBD18,C11orf31,CLP1,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,LRRC55,MED19,MPEG1,MRPL16,MS4A1,MS4A12,MS4A13,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AK2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,P2RX3,PATL1,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,STX3,TCN1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5,ZFP91"
TCGA.AA.3811	11	56622716	60499282	1055	0.036	NEUTRAL	NA	73	"APLNR,BTBD18,C11orf31,CLP1,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,LRRC55,MED19,MPEG1,MRPL16,MS4A1,MS4A12,MS4A13,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AK2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,P2RX3,PATL1,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,STX3,TCN1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5,ZFP91"
TCGA.AA.3867	11	56622716	79372388	5505	0.2756	NEUTRAL	NA	435	Too-Many
TCGA.CI.6622	11	56641111	134944769	25767	-0.0043	NEUTRAL	NA	783	Too-Many
TCGA.AG.A01W.01A	11	56705956	57317997	124	-0.2493	NEUTRAL	NA	13	"APLNR,LRRC55,OR5AK2,P2RX3,PRG2,PRG3,RTN4RL2,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TNKS1BP1"
TCGA.AA.3982	11	56841618	57968685	318	0.3468	NEUTRAL	NA	26	"APLNR,BTBD18,C11orf31,CLP1,CTNND1,LRRC55,MED19,OR6Q1,OR9I1,OR9Q1,OR9Q2,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5"
TCGA.AA.3850	11	56877998	57781314	217	0.28775	NEUTRAL	NA	22	"APLNR,BTBD18,C11orf31,CLP1,CTNND1,LRRC55,MED19,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5"
TCGA.G4.6299	11	56922270	56933838	11	-0.3091	NEUTRAL	NA	0	None
TCGA.G4.6299	11	56940533	100302505	12739	0.2975	NEUTRAL	NA	505	Too-Many
TCGA.AA.A02H.01A	11	56949408	57089225	17	-0.2626	NEUTRAL	NA	3	"APLNR,LRRC55,TNKS1BP1"
TCGA.AZ.4684.01A	11	56949408	61957687	664	0.1673	NEUTRAL	NA	109	Too-Many
TCGA.AA.3862.01A	11	56950048	57183999	54	-0.3838	NEUTRAL	NA	8	"APLNR,LRRC55,P2RX3,PRG2,PRG3,SLC43A3,SSRP1,TNKS1BP1"
TCGA.AA.3509.01A	11	56950048	60971532	448	0.085	NEUTRAL	NA	85	"APLNR,BTBD18,C11orf31,CCDC86,CD5,CD6,CLP1,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,LRRC55,MED19,MPEG1,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,P2RX3,PATL1,PGA3,PRG2,PRG3,PRPF19,PTGDR2,RTN4RL2,SERPING1,SLC15A3,SLC43A1,SLC43A3,SMTNL1,SSRP1,STX3,TCN1,TIMM10,TMEM109,TMEM132A,TMX2,TNKS1BP1,UBE2L6,VPS37C,YPEL4,ZDHHC5,ZFP91,ZP1"
TCGA.AA.3861.01A	11	56950048	62259165	664	-0.1324	NEUTRAL	NA	117	Too-Many
TCGA.AD.6901	11	56950217	134944769	25636	-0.2753	NEUTRAL	NA	782	Too-Many
TCGA.AG.A00Y.01A	11	56954727	60695106	379	0.2152	NEUTRAL	NA	80	"APLNR,BTBD18,C11orf31,CCDC86,CLP1,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,LRRC55,MED19,MPEG1,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,P2RX3,PATL1,PRG2,PRG3,PRPF19,PTGDR2,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,STX3,TCN1,TIMM10,TMEM109,TMEM132A,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5,ZFP91,ZP1"
TCGA.AG.3906.01A	11	57003309	57509026	115	0.254	NEUTRAL	NA	19	"APLNR,C11orf31,CLP1,MED19,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5"
TCGA.AA.A017.01A	11	57003309	57563943	117	-0.4937	NEUTRAL	NA	21	"APLNR,BTBD18,C11orf31,CLP1,CTNND1,MED19,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5"
TCGA.A6.3810.01A	11	57067948	57077092	8	0.213	NEUTRAL	NA	1	TNKS1BP1
TCGA.AA.A00N.01A	11	57067948	57089225	12	-0.4899	NEUTRAL	NA	1	TNKS1BP1
TCGA.AA.A010.01A	11	57067948	57089225	12	-0.0724	NEUTRAL	NA	1	TNKS1BP1
TCGA.AA.A00Q.01A	11	57067948	57115593	30	-0.4537	NEUTRAL	NA	3	"P2RX3,SSRP1,TNKS1BP1"
TCGA.AG.A00C.01A	11	57067948	57296138	71	0.2424	NEUTRAL	NA	9	"P2RX3,PRG2,PRG3,RTN4RL2,SLC43A1,SLC43A3,SSRP1,TIMM10,TNKS1BP1"
TCGA.AA.A00F.01A	11	57067948	57507534	111	0.3538	NEUTRAL	NA	17	"CLP1,MED19,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5"
TCGA.AG.4009.01A	11	57075852	57079977	4	0.0481	NEUTRAL	NA	1	TNKS1BP1
TCGA.AG.A015.01A	11	57075852	57079977	4	0.2108	NEUTRAL	NA	1	TNKS1BP1
TCGA.A6.3808.01A	11	57076227	58345407	166	-0.0756	NEUTRAL	NA	34	"BTBD18,C11orf31,CLP1,CTNND1,LPXN,MED19,OR10Q1,OR10W1,OR1S1,OR1S2,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5"
TCGA.A6.3810.01A	11	57079977	134257391	6316	-0.2931	NEUTRAL	NA	780	Too-Many
TCGA.AG.A015.01A	11	57085227	62300564	620	-0.2072	NEUTRAL	NA	115	Too-Many
TCGA.AG.4009.01A	11	57097498	57263456	49	0.0615	NEUTRAL	NA	7	"P2RX3,PRG2,PRG3,RTN4RL2,SLC43A1,SLC43A3,SSRP1"
TCGA.AF.3914.01A	11	57099090	62346021	664	-0.0523	NEUTRAL	NA	116	Too-Many
TCGA.AA.A02H.01A	11	57101888	57574355	99	-0.167	NEUTRAL	NA	19	"BTBD18,C11orf31,CLP1,CTNND1,MED19,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,UBE2L6,YPEL4,ZDHHC5"
TCGA.AA.A01I.01A	11	57114011	57137310	11	-0.2994	NEUTRAL	NA	1	P2RX3
TCGA.AG.3909.01A	11	57114011	57183999	24	0.3204	NEUTRAL	NA	4	"P2RX3,PRG2,PRG3,SLC43A3"
TCGA.AA.A01Q.01A	11	57114824	57182445	24	0.2831	NEUTRAL	NA	4	"P2RX3,PRG2,PRG3,SLC43A3"
TCGA.CK.5914.01A	11	57114824	57185180	26	0.1498	NEUTRAL	NA	4	"P2RX3,PRG2,PRG3,SLC43A3"
TCGA.AA.A010.01A	11	57114824	57228267	32	0.1783	NEUTRAL	NA	5	"P2RX3,PRG2,PRG3,RTN4RL2,SLC43A3"
TCGA.AA.A00Q.01A	11	57116041	57505808	82	-0.0779	NEUTRAL	NA	15	"CLP1,MED19,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,TIMM10,TMX2,UBE2L6,YPEL4,ZDHHC5"
TCGA.AA.A01I.01A	11	57155210	60669809	326	-0.1083	NEUTRAL	NA	72	"BTBD18,C11orf31,CCDC86,CLP1,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,MED19,MPEG1,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,PATL1,PRG2,PRPF19,PTGDR2,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,STX3,TCN1,TIMM10,TMX2,UBE2L6,YPEL4,ZDHHC5,ZFP91,ZP1"
TCGA.AA.A00J.01A	11	57175217	61083718	373	0.0994	NEUTRAL	NA	82	"BTBD18,C11orf31,CCDC86,CD5,CD6,CLP1,CNTF,CTNND1,DDB1,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,MED19,MPEG1,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,PATL1,PGA3,PGA4,PGA5,PRPF19,PTGDR2,RTN4RL2,SERPING1,SLC15A3,SLC43A1,SLC43A3,SMTNL1,STX3,TCN1,TIMM10,TMEM109,TMEM132A,TMX2,UBE2L6,VPS37C,VWCE,YPEL4,ZDHHC5,ZFP91,ZP1"
TCGA.AA.3967.01A	11	57175217	62105401	590	-0.1585	NEUTRAL	NA	108	Too-Many
TCGA.AA.3862.01A	11	57185180	62259165	616	-0.007	NEUTRAL	NA	110	Too-Many
TCGA.AA.A010.01A	11	57235033	57265176	11	-0.3916	NEUTRAL	NA	2	"RTN4RL2,SLC43A1"
TCGA.D5.6923	11	57252861	134944769	25546	0.0356	NEUTRAL	NA	773	Too-Many
TCGA.AA.A01Q.01A	11	57268214	59577269	149	0.0835	NEUTRAL	NA	48	"BTBD18,C11orf31,CLP1,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GLYAT,GLYATL1,GLYATL2,LPXN,MED19,MPEG1,MRPL16,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,PATL1,SERPING1,SLC43A1,SMTNL1,STX3,TIMM10,TMX2,UBE2L6,YPEL4,ZDHHC5,ZFP91"
TCGA.AA.3529	11	57284714	110494873	15942	0.3518	NEUTRAL	NA	550	Too-Many
TCGA.CK.5914.01A	11	57296138	57408619	21	0.1924	NEUTRAL	NA	4	"SERPING1,SMTNL1,TIMM10,UBE2L6"
TCGA.AG.A00C.01A	11	57297526	57313954	7	-0.2699	NEUTRAL	NA	2	"SMTNL1,TIMM10"
TCGA.AG.A00C.01A	11	57317391	57509026	37	0.3755	NEUTRAL	NA	9	"C11orf31,CLP1,MED19,SERPING1,SMTNL1,TMX2,UBE2L6,YPEL4,ZDHHC5"
TCGA.AG.A01W.01A	11	57319606	58073775	45	0.1132	NEUTRAL	NA	18	"BTBD18,C11orf31,CLP1,CTNND1,MED19,OR10Q1,OR10W1,OR1S1,OR1S2,OR6Q1,OR9I1,OR9Q1,OR9Q2,SERPING1,TMX2,UBE2L6,YPEL4,ZDHHC5"
TCGA.AG.4009.01A	11	57408619	57480064	21	-0.0959	NEUTRAL	NA	5	"CLP1,MED19,TMX2,YPEL4,ZDHHC5"
TCGA.CK.5914.01A	11	57440525	57480064	15	0.0776	NEUTRAL	NA	3	"MED19,TMX2,ZDHHC5"
TCGA.AG.3909.01A	11	57455931	57467301	9	0.2387	NEUTRAL	NA	1	ZDHHC5
TCGA.AA.A010.01A	11	57479385	57513096	13	0.0424	NEUTRAL	NA	4	"BTBD18,C11orf31,MED19,TMX2"
TCGA.AG.3881	11	57481017	62101764	1274	-0.3536	NEUTRAL	NA	96	"BEST1,BTBD18,C11orf31,CCDC86,CD5,CD6,CNTF,CPSF7,CTNND1,CYB561A3,DAGLA,DDB1,DTX4,FADS1,FADS2,FADS3,FAM111A,FAM111B,FEN1,FTH1,GIF,GLYAT,GLYATL1,GLYATL2,INCENP,LPXN,LRRC10B,MPEG1,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,MYRF,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,PATL1,PGA3,PGA4,PGA5,PPP1R32,PRPF19,PTGDR2,RAB3IL1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,STX3,SYT7,TCN1,TKFC,TMEM109,TMEM132A,TMEM138,TMEM216,TMEM258,TMX2,VPS37C,VWCE,ZFP91,ZP1"
TCGA.AG.4009.01A	11	57505014	59348876	108	0.3219	NEUTRAL	NA	35	"BTBD18,C11orf31,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GLYAT,GLYATL1,GLYATL2,LPXN,MPEG1,OR10Q1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,TMX2,ZFP91"
TCGA.AA.A00F.01A	11	57509026	58322264	27	0.0226	NEUTRAL	NA	17	"BTBD18,C11orf31,CTNND1,LPXN,OR10Q1,OR10W1,OR1S1,OR1S2,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2"
TCGA.CK.5914.01A	11	57558900	58322264	41	0.2897	NEUTRAL	NA	15	"CTNND1,LPXN,OR10Q1,OR10W1,OR1S1,OR1S2,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2"
TCGA.AG.A00C.01A	11	57558900	58891605	74	-0.1709	NEUTRAL	NA	21	"CNTF,CTNND1,FAM111B,GLYAT,GLYATL1,GLYATL2,LPXN,OR10Q1,OR10W1,OR1S1,OR1S2,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,ZFP91"
TCGA.AG.3906.01A	11	57558900	58919756	78	-0.0738	NEUTRAL	NA	22	"CNTF,CTNND1,FAM111A,FAM111B,GLYAT,GLYATL1,GLYATL2,LPXN,OR10Q1,OR10W1,OR1S1,OR1S2,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,ZFP91"
TCGA.AA.A017.01A	11	57569168	62302473	493	-0.0508	NEUTRAL	NA	96	"AHNAK,ASRGL1,BEST1,CCDC86,CD5,CD6,CNTF,CPSF7,CTNND1,CYB561A3,DAGLA,DDB1,DTX4,FADS1,FADS2,FADS3,FAM111A,FAM111B,FEN1,FTH1,GIF,GLYAT,GLYATL1,GLYATL2,INCENP,LPXN,LRRC10B,MPEG1,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,MYRF,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,PATL1,PGA3,PGA4,PGA5,PPP1R32,PRPF19,PTGDR2,RAB3IL1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,STX3,SYT7,TCN1,TKFC,TMEM109,TMEM132A,TMEM138,TMEM216,TMEM258,VPS37C,VWCE,ZFP91,ZP1"
TCGA.AA.A010.01A	11	57571042	57957931	19	0.0802	NEUTRAL	NA	5	"CTNND1,OR6Q1,OR9I1,OR9Q1,OR9Q2"
TCGA.AA.3850	11	57792476	57854730	29	0.23735	NEUTRAL	NA	2	"OR6Q1,OR9Q1"
TCGA.AA.A00D.01A	11	57798378	58169921	14	-0.3919	NEUTRAL	NA	9	"OR10Q1,OR10W1,OR1S1,OR1S2,OR5B17,OR6Q1,OR9I1,OR9Q1,OR9Q2"
TCGA.AA.A00Q.01A	11	57798378	60468297	180	-0.0809	NEUTRAL	NA	50	"CNTF,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,MPEG1,MRPL16,MS4A1,MS4A12,MS4A13,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,OSBP,PATL1,STX3,TCN1,ZFP91"
TCGA.AA.3850	11	57859737	60395209	705	-0.27035	NEUTRAL	NA	48	"CNTF,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,MPEG1,MRPL16,MS4A1,MS4A12,MS4A13,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,OOSP2,OR10Q1,OR10V1,OR10W1,OR1S1,OR1S2,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR9I1,OR9Q1,OR9Q2,OSBP,PATL1,STX3,TCN1,ZFP91"
TCGA.CK.5915	11	57891196	134944769	25426	0.1148	NEUTRAL	NA	758	Too-Many
TCGA.AA.3845	11	57968685	134944769	25401	0.0091	NEUTRAL	NA	756	Too-Many
TCGA.AA.3982	11	57969052	59184191	296	-0.1542	NEUTRAL	NA	20	"CNTF,DTX4,FAM111A,FAM111B,GLYAT,GLYATL1,GLYATL2,LPXN,MPEG1,OR10Q1,OR10W1,OR1S1,OR1S2,OR5AN1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,ZFP91"
TCGA.AA.A010.01A	11	57995357	58352242	19	0.1552	NEUTRAL	NA	9	"LPXN,OR10Q1,OR10W1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,ZFP91"
TCGA.EI.7004	11	58111082	58178586	34	-0.3477	NEUTRAL	NA	2	"OR5B17,OR5B3"
TCGA.AG.A01W.01A	11	58146774	60810333	285	-0.028	NEUTRAL	NA	51	"CCDC86,CD6,CNTF,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,MPEG1,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10V1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B2,OR5B21,OR5B3,OSBP,PATL1,PRPF19,PTGDR2,SLC15A3,STX3,TCN1,TMEM109,TMEM132A,ZFP91,ZP1"
TCGA.AA.A00N.01A	11	58169921	58322264	10	0.255	NEUTRAL	NA	5	"LPXN,OR5B12,OR5B2,OR5B21,OR5B3"
TCGA.AA.A00D.01A	11	58170546	60064659	124	-0.0267	NEUTRAL	NA	33	"CNTF,DTX4,FAM111A,FAM111B,GIF,GLYAT,GLYATL1,GLYATL2,LPXN,MPEG1,MRPL16,MS4A2,MS4A3,MS4A4A,MS4A6A,OOSP2,OR10V1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OR5B12,OR5B2,OR5B21,OR5B3,OSBP,PATL1,STX3,TCN1,ZFP91"
TCGA.EI.7004	11	58185335	58566704	71	0.0986	NEUTRAL	NA	7	"CNTF,GLYAT,LPXN,OR5B12,OR5B2,OR5B21,ZFP91"
TCGA.AA.A02K.01A	11	58377252	58390198	10	-0.4425	NEUTRAL	NA	2	"CNTF,ZFP91"
TCGA.AA.A00F.01A	11	58377264	58723071	24	0.1226	NEUTRAL	NA	5	"CNTF,GLYAT,GLYATL1,GLYATL2,ZFP91"
TCGA.AA.A00N.01A	11	58377264	58723071	26	0.349	NEUTRAL	NA	5	"CNTF,GLYAT,GLYATL1,GLYATL2,ZFP91"
TCGA.DC.5337	11	58381122	134944769	25216	-0.0022	NEUTRAL	NA	746	Too-Many
TCGA.AA.A02K.01A	11	58391459	59377828	55	-0.0841	NEUTRAL	NA	16	"CNTF,DTX4,FAM111A,FAM111B,GLYAT,GLYATL1,GLYATL2,MPEG1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OSBP"
TCGA.EI.7004	11	58598011	58669420	20	-0.4236	NEUTRAL	NA	1	GLYATL2
TCGA.AG.3909.01A	11	58601865	58606948	4	-0.3647	NEUTRAL	NA	1	GLYATL2
TCGA.AA.A010.01A	11	58601865	58916290	15	0.3738	NEUTRAL	NA	4	"FAM111A,FAM111B,GLYATL1,GLYATL2"
TCGA.CK.5914.01A	11	58601865	58958527	22	-0.4913	NEUTRAL	NA	5	"DTX4,FAM111A,FAM111B,GLYATL1,GLYATL2"
TCGA.AA.A02H.01A	11	58601865	59377802	47	0.1525	NEUTRAL	NA	14	"DTX4,FAM111A,FAM111B,GLYATL1,GLYATL2,MPEG1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OSBP"
TCGA.EI.7004	11	58670552	62838068	1078	-0.0054	NEUTRAL	NA	107	Too-Many
TCGA.AG.3909.01A	11	58710776	58723071	7	0.2946	NEUTRAL	NA	1	GLYATL1
TCGA.A6.3808.01A	11	58722196	59480357	58	-0.1806	NEUTRAL	NA	14	"DTX4,FAM111A,FAM111B,GLYATL1,MPEG1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OSBP,PATL1"
TCGA.AG.A01Y	11	58855018	58891291	4	0.3733	NEUTRAL	NA	1	FAM111B
TCGA.F5.6813	11	58905335	134944769	25174	-0.0015	NEUTRAL	NA	740	Too-Many
TCGA.AA.A00N.01A	11	58940032	58958527	5	-0.1196	NEUTRAL	NA	1	DTX4
TCGA.AG.3906.01A	11	58940032	58972137	9	0.3646	NEUTRAL	NA	1	DTX4
TCGA.AG.A00C.01A	11	58940032	59282937	19	-0.1749	NEUTRAL	NA	9	"DTX4,MPEG1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1"
TCGA.AA.A00F.01A	11	58949173	62652602	549	0.3087	NEUTRAL	NA	101	Too-Many
TCGA.AA.A010.01A	11	58967105	59348876	16	0.0674	NEUTRAL	NA	10	"DTX4,MPEG1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OSBP"
TCGA.AG.3906.01A	11	58978150	59271011	8	-0.0131	NEUTRAL	NA	6	"MPEG1,OR4D10,OR4D6,OR5A1,OR5A2,OR5AN1"
TCGA.DM.A1HB	11	59053461	81461365	5597	0.0301	NEUTRAL	NA	389	Too-Many
TCGA.AA.3982	11	59189911	60527921	377	0.1875	NEUTRAL	NA	27	"GIF,MRPL16,MS4A1,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10V1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OSBP,PATL1,STX3,TCN1"
TCGA.AA.3941	11	59190649	60335963	336	-0.3882	NEUTRAL	NA	24	"GIF,MRPL16,MS4A1,MS4A12,MS4A13,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,OOSP2,OR10V1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OSBP,PATL1,STX3,TCN1"
TCGA.AM.5820	11	59224143	59519394	61	-0.3372	NEUTRAL	NA	7	"OR10V1,OR4D10,OR4D11,OR4D6,OR4D9,OSBP,PATL1"
TCGA.AG.3906.01A	11	59282336	59361483	8	0.284	NEUTRAL	NA	2	"OR4D9,OSBP"
TCGA.AG.4009.01A	11	59361035	59369075	6	-0.1728	NEUTRAL	NA	1	OSBP
TCGA.AA.A02K.01A	11	59382740	59434286	18	0.1962	NEUTRAL	NA	2	"OSBP,PATL1"
TCGA.AG.3906.01A	11	59422974	60558409	113	0.0457	NEUTRAL	NA	21	"GIF,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,OR10V1,PATL1,STX3,TCN1"
TCGA.AA.A00N.01A	11	59436314	59540638	4	-0.3066	NEUTRAL	NA	3	"OR10V1,PATL1,STX3"
TCGA.CK.5914.01A	11	59436314	59577269	15	-0.1755	NEUTRAL	NA	4	"MRPL16,OR10V1,PATL1,STX3"
TCGA.AA.A010.01A	11	59436314	59862980	50	0.2586	NEUTRAL	NA	9	"GIF,MRPL16,MS4A2,MS4A3,OOSP2,OR10V1,PATL1,STX3,TCN1"
TCGA.AG.4009.01A	11	59480357	59575122	12	0.2308	NEUTRAL	NA	3	"MRPL16,OR10V1,STX3"
TCGA.AG.3909.01A	11	59480357	59577269	13	0.1235	NEUTRAL	NA	3	"MRPL16,OR10V1,STX3"
TCGA.AA.A02K.01A	11	59480371	62259154	427	-0.1194	NEUTRAL	NA	63	"AHNAK,ASRGL1,BEST1,CCDC86,CD5,CD6,CPSF7,CYB561A3,DAGLA,DDB1,FADS1,FADS2,FADS3,FEN1,FTH1,GIF,INCENP,LRRC10B,MRPL16,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,MYRF,OOSP2,OR10V1,PGA3,PGA4,PGA5,PPP1R32,PRPF19,PTGDR2,RAB3IL1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,STX3,SYT7,TCN1,TKFC,TMEM109,TMEM132A,TMEM138,TMEM216,TMEM258,VPS37C,VWCE,ZP1"
TCGA.AM.5820	11	59519409	60499282	299	-0.0034	NEUTRAL	NA	17	"GIF,MRPL16,MS4A1,MS4A12,MS4A13,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8,OOSP2,STX3,TCN1"
TCGA.AA.A00L.01A	11	59540638	59596891	14	0.2856	NEUTRAL	NA	3	"GIF,MRPL16,STX3"
TCGA.AG.A00C.01A	11	59540638	59622098	24	-0.1742	NEUTRAL	NA	4	"GIF,MRPL16,STX3,TCN1"
TCGA.AA.A00N.01A	11	59554458	59562794	7	0.3268	NEUTRAL	NA	1	STX3
TCGA.AA.A02H.01A	11	59557929	59810895	29	0.2067	NEUTRAL	NA	5	"GIF,MRPL16,OOSP2,STX3,TCN1"
TCGA.AA.A00L.01A	11	59599101	64875011	939	0.0275	NEUTRAL	NA	151	Too-Many
TCGA.AG.4009.01A	11	59603234	60198222	61	0.2076	NEUTRAL	NA	11	"GIF,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,OOSP2,TCN1"
TCGA.AA.A01Q.01A	11	59622098	60231693	59	0.1982	NEUTRAL	NA	11	"MS4A1,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,OOSP2,TCN1"
TCGA.AG.A00C.01A	11	59623290	59949032	29	0.0884	NEUTRAL	NA	5	"MS4A2,MS4A3,MS4A6A,OOSP2,TCN1"
TCGA.AA.A00N.01A	11	59633808	59814367	5	-0.0953	NEUTRAL	NA	2	"OOSP2,TCN1"
TCGA.AF.6672	11	59720415	134944769	24980	-0.4191	NEUTRAL	NA	723	Too-Many
TCGA.CK.5914.01A	11	59810895	59862980	16	-0.4729	NEUTRAL	NA	3	"MS4A2,MS4A3,OOSP2"
TCGA.AA.A02H.01A	11	59812093	59862980	15	-0.5092	NEUTRAL	NA	3	"MS4A2,MS4A3,OOSP2"
TCGA.AG.3909.01A	11	59857113	59949032	12	0.0691	NEUTRAL	NA	2	"MS4A2,MS4A6A"
TCGA.DC.6158	11	59875476	60615913	248	0.0587	NEUTRAL	NA	13	"CCDC86,MS4A1,MS4A10,MS4A12,MS4A13,MS4A14,MS4A15,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,MS4A8"
TCGA.CK.5914.01A	11	59939580	60197127	28	0.2685	NEUTRAL	NA	6	"MS4A14,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7"
TCGA.AG.A00C.01A	11	60048068	60201187	25	-0.1903	NEUTRAL	NA	5	"MS4A14,MS4A4A,MS4A5,MS4A6E,MS4A7"
TCGA.AA.A02H.01A	11	60059670	60152519	11	-0.1293	NEUTRAL	NA	3	"MS4A4A,MS4A6E,MS4A7"
TCGA.AA.A00D.01A	11	60068411	60165286	15	-0.4551	NEUTRAL	NA	4	"MS4A14,MS4A4A,MS4A6E,MS4A7"
TCGA.AA.A010.01A	11	60150608	60199811	14	-0.073	NEUTRAL	NA	3	"MS4A14,MS4A5,MS4A7"
TCGA.AA.A00D.01A	11	60167816	60468297	26	0.0398	NEUTRAL	NA	6	"MS4A1,MS4A12,MS4A13,MS4A14,MS4A5,MS4A8"
TCGA.AG.3909.01A	11	60197127	60201187	4	-0.0759	NEUTRAL	NA	1	MS4A5
TCGA.AA.A02H.01A	11	60197127	60235673	11	0.1942	NEUTRAL	NA	2	"MS4A1,MS4A5"
TCGA.AG.4009.01A	11	60199811	60235673	9	-0.2617	NEUTRAL	NA	2	"MS4A1,MS4A5"
TCGA.AG.A00C.01A	11	60215100	62348937	340	0.1194	NEUTRAL	NA	52	"AHNAK,ASRGL1,BEST1,CCDC86,CD5,CD6,CPSF7,CYB561A3,DAGLA,DDB1,EEF1G,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MS4A1,MS4A10,MS4A12,MS4A13,MS4A15,MS4A5,MS4A8,MYRF,PGA3,PGA4,PGA5,PPP1R32,PRPF19,PTGDR2,RAB3IL1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,SYT7,TKFC,TMEM109,TMEM132A,TMEM138,TMEM216,TMEM258,TUT1,VPS37C,VWCE,ZP1"
TCGA.AA.A010.01A	11	60229811	60309921	17	-0.4839	NEUTRAL	NA	3	"MS4A1,MS4A12,MS4A13"
TCGA.AA.A01Q.01A	11	60233355	60292643	12	-0.2936	NEUTRAL	NA	3	"MS4A1,MS4A12,MS4A13"
TCGA.AG.4009.01A	11	60291297	60296785	3	-0.3598	NEUTRAL	NA	1	MS4A13
TCGA.AA.A01Q.01A	11	60296785	60482442	7	0.1556	NEUTRAL	NA	2	"MS4A13,MS4A8"
TCGA.AG.3909.01A	11	60296785	60642935	32	0.3466	NEUTRAL	NA	7	"CCDC86,MS4A10,MS4A13,MS4A15,MS4A8,PTGDR2,ZP1"
TCGA.AA.A02H.01A	11	60309921	60558409	13	0.0811	NEUTRAL	NA	4	"MS4A10,MS4A13,MS4A15,MS4A8"
TCGA.AG.4009.01A	11	60309921	60567240	18	0.3604	NEUTRAL	NA	4	"MS4A10,MS4A13,MS4A15,MS4A8"
TCGA.CK.5914.01A	11	60309921	60666582	37	0.215	NEUTRAL	NA	8	"CCDC86,MS4A10,MS4A13,MS4A15,MS4A8,PRPF19,PTGDR2,ZP1"
TCGA.AA.3941	11	60357881	60366670	8	0.0061	NEUTRAL	NA	0	None
TCGA.AA.3941	11	60383466	60508998	21	-0.3082	NEUTRAL	NA	1	MS4A8
TCGA.AA.3850	11	60400153	62816079	600	0.36625	NEUTRAL	NA	76	"AHNAK,ASRGL1,B3GAT3,BEST1,BSCL2,C11orf98,CCDC86,CD5,CD6,CHRM1,CPSF7,CYB561A3,DAGLA,DDB1,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,INCENP,INTS5,LBHD1,LRRC10B,LRRN4CL,METTL12,MS4A10,MS4A15,MS4A8,MTA2,MYRF,NXF1,PGA3,PGA4,PGA5,POLR2G,PPP1R32,PRPF19,PTGDR2,RAB3IL1,ROM1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,SLC22A6,SLC22A8,SLC3A2,STX5,SYT7,TAF6L,TKFC,TMEM109,TMEM132A,TMEM138,TMEM179B,TMEM216,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,VPS37C,VWCE,WDR74,ZBTB3,ZP1"
TCGA.CM.6172	11	60417360	61516909	260	-0.1076	NEUTRAL	NA	28	"CCDC86,CD5,CD6,CPSF7,CYB561A3,DAGLA,DDB1,LRRC10B,MS4A10,MS4A15,MS4A8,PGA3,PGA4,PGA5,PPP1R32,PRPF19,PTGDR2,SDHAF2,SLC15A3,SYT7,TKFC,TMEM109,TMEM132A,TMEM138,TMEM216,VPS37C,VWCE,ZP1"
TCGA.A6.2683	11	60430626	134944769	24765	-0.2297	NEUTRAL	NA	711	Too-Many
TCGA.AA.3844	11	60461495	74046974	2802	0.1955	NEUTRAL	NA	315	Too-Many
TCGA.AA.A00N.01A	11	60468297	60658586	32	0.1759	NEUTRAL	NA	7	"CCDC86,MS4A10,MS4A15,MS4A8,PRPF19,PTGDR2,ZP1"
TCGA.AA.A00D.01A	11	60470802	60562980	14	-0.3915	NEUTRAL	NA	3	"MS4A10,MS4A15,MS4A8"
TCGA.AM.5820	11	60508897	60693814	72	0.3456	NEUTRAL	NA	8	"CCDC86,MS4A10,MS4A15,PRPF19,PTGDR2,TMEM109,TMEM132A,ZP1"
TCGA.AA.3811	11	60508897	62848366	593	0.3606	NEUTRAL	NA	76	"AHNAK,ASRGL1,B3GAT3,BEST1,BSCL2,C11orf98,CCDC86,CD5,CD6,CHRM1,CPSF7,CYB561A3,DAGLA,DDB1,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,INCENP,INTS5,LBHD1,LRRC10B,LRRN4CL,METTL12,MS4A10,MS4A15,MTA2,MYRF,NXF1,PGA3,PGA4,PGA5,POLR2G,PPP1R32,PRPF19,PTGDR2,RAB3IL1,ROM1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,SLC22A24,SLC22A6,SLC22A8,SLC3A2,STX5,SYT7,TAF6L,TKFC,TMEM109,TMEM132A,TMEM138,TMEM179B,TMEM216,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,VPS37C,VWCE,WDR74,ZBTB3,ZP1"
TCGA.AA.3941	11	60517886	62816079	582	0.03	NEUTRAL	NA	75	"AHNAK,ASRGL1,B3GAT3,BEST1,BSCL2,C11orf98,CCDC86,CD5,CD6,CHRM1,CPSF7,CYB561A3,DAGLA,DDB1,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,INCENP,INTS5,LBHD1,LRRC10B,LRRN4CL,METTL12,MS4A10,MS4A15,MTA2,MYRF,NXF1,PGA3,PGA4,PGA5,POLR2G,PPP1R32,PRPF19,PTGDR2,RAB3IL1,ROM1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,SLC22A6,SLC22A8,SLC3A2,STX5,SYT7,TAF6L,TKFC,TMEM109,TMEM132A,TMEM138,TMEM179B,TMEM216,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,VPS37C,VWCE,WDR74,ZBTB3,ZP1"
TCGA.AA.A01Q.01A	11	60534958	61098978	125	-0.3488	NEUTRAL	NA	17	"CCDC86,CD5,CD6,DDB1,MS4A10,MS4A15,PGA3,PGA4,PGA5,PRPF19,PTGDR2,SLC15A3,TMEM109,TMEM132A,VPS37C,VWCE,ZP1"
TCGA.AA.A00Q.01A	11	60557827	60891295	70	-0.2443	NEUTRAL	NA	10	"CCDC86,CD5,CD6,MS4A10,PRPF19,PTGDR2,SLC15A3,TMEM109,TMEM132A,ZP1"
TCGA.A6.5665	11	60559851	80245588	4809	-0.31	NEUTRAL	NA	361	Too-Many
TCGA.A6.2672	11	60559851	80280364	4818	-0.3477	NEUTRAL	NA	361	Too-Many
TCGA.AA.A00D.01A	11	60565819	60637753	11	-0.0276	NEUTRAL	NA	4	"CCDC86,MS4A10,PTGDR2,ZP1"
TCGA.AA.3982	11	60566826	60648732	40	0.2448	NEUTRAL	NA	4	"CCDC86,MS4A10,PTGDR2,ZP1"
TCGA.A6.3808.01A	11	60567240	61026115	81	-0.324	NEUTRAL	NA	15	"CCDC86,CD5,CD6,MS4A10,PGA3,PGA4,PGA5,PRPF19,PTGDR2,SLC15A3,TMEM109,TMEM132A,VPS37C,VWCE,ZP1"
TCGA.AG.4009.01A	11	60609546	60619986	5	-0.5007	NEUTRAL	NA	2	"CCDC86,PTGDR2"
TCGA.AA.A02H.01A	11	60609546	60637753	8	0.127	NEUTRAL	NA	3	"CCDC86,PTGDR2,ZP1"
TCGA.AG.3906.01A	11	60635015	60671152	18	0.1107	NEUTRAL	NA	2	"PRPF19,ZP1"
TCGA.AG.4009.01A	11	60635015	60671152	17	0.1741	NEUTRAL	NA	2	"PRPF19,ZP1"
TCGA.AA.A01F.01A	11	60636958	60658586	7	0.0766	NEUTRAL	NA	2	"PRPF19,ZP1"
TCGA.AA.A00D.01A	11	60638383	60642935	4	-0.4771	NEUTRAL	NA	1	ZP1
TCGA.AG.3909.01A	11	60658586	60785224	39	-0.4172	NEUTRAL	NA	5	"CD6,PRPF19,SLC15A3,TMEM109,TMEM132A"
TCGA.AA.A00D.01A	11	60658586	60786657	40	0.0959	NEUTRAL	NA	5	"CD6,PRPF19,SLC15A3,TMEM109,TMEM132A"
TCGA.AA.A01F.01A	11	60665281	60689286	12	-0.3301	NEUTRAL	NA	2	"PRPF19,TMEM109"
TCGA.CK.5914.01A	11	60668003	60781352	34	-0.4127	NEUTRAL	NA	5	"CD6,PRPF19,SLC15A3,TMEM109,TMEM132A"
TCGA.AA.A02H.01A	11	60668003	61015854	46	-0.2143	NEUTRAL	NA	10	"CD5,CD6,PGA3,PGA4,PGA5,PRPF19,SLC15A3,TMEM109,TMEM132A,VPS37C"
TCGA.AA.A01I.01A	11	60670870	62760682	413	-0.3631	NEUTRAL	NA	70	"AHNAK,ASRGL1,B3GAT3,BEST1,BSCL2,C11orf98,CD5,CD6,CHRM1,CPSF7,CYB561A3,DAGLA,DDB1,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,INCENP,INTS5,LBHD1,LRRC10B,LRRN4CL,METTL12,MTA2,MYRF,NXF1,PGA3,PGA4,PGA5,POLR2G,PPP1R32,PRPF19,RAB3IL1,ROM1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,SLC22A6,SLC22A8,SLC3A2,STX5,SYT7,TAF6L,TKFC,TMEM109,TMEM132A,TMEM138,TMEM179B,TMEM216,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,VPS37C,VWCE,WDR74,ZBTB3"
TCGA.A6.2681	11	60693218	61033226	101	-0.4472	NEUTRAL	NA	9	"CD5,CD6,PGA3,PGA4,PGA5,SLC15A3,TMEM132A,VPS37C,VWCE"
TCGA.AA.A01F.01A	11	60694687	60699109	5	0.1212	NEUTRAL	NA	1	TMEM132A
TCGA.AA.A00O.01A	11	60697942	71706449	1455	-0.2421	NEUTRAL	NA	274	Too-Many
TCGA.AA.A01F.01A	11	60700985	61109853	86	-0.3612	NEUTRAL	NA	11	"CD5,CD6,DDB1,PGA3,PGA4,PGA5,SLC15A3,TKFC,TMEM132A,VPS37C,VWCE"
TCGA.AM.5820	11	60703075	61261017	126	0.0333	NEUTRAL	NA	17	"CD5,CD6,CPSF7,CYB561A3,DDB1,PGA3,PGA4,PGA5,PPP1R32,SDHAF2,SLC15A3,TKFC,TMEM132A,TMEM138,TMEM216,VPS37C,VWCE"
TCGA.AG.A00Y.01A	11	60713973	62186497	228	0.3054	NEUTRAL	NA	35	"ASRGL1,BEST1,CD5,CD6,CPSF7,CYB561A3,DAGLA,DDB1,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MYRF,PGA3,PGA4,PGA5,PPP1R32,RAB3IL1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC15A3,SYT7,TKFC,TMEM138,TMEM216,TMEM258,VPS37C,VWCE"
TCGA.AA.A01K.01A	11	60713973	71946661	1498	-0.5068	NEUTRAL	NA	282	Too-Many
TCGA.AG.3906.01A	11	60739265	61197537	102	0.073	NEUTRAL	NA	13	"CD5,CD6,CPSF7,CYB561A3,DDB1,PGA3,PGA4,PGA5,TKFC,TMEM138,TMEM216,VPS37C,VWCE"
TCGA.CK.5914.01A	11	60783143	60906154	19	0.0794	NEUTRAL	NA	3	"CD5,CD6,VPS37C"
TCGA.AG.3909.01A	11	60785711	60906154	15	0.1095	NEUTRAL	NA	3	"CD5,CD6,VPS37C"
TCGA.AG.A01W.01A	11	60814826	60827875	8	0.3446	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	60837874	60858689	13	-0.0159	NEUTRAL	NA	0	None
TCGA.AA.A00D.01A	11	60870009	61017376	18	-0.3142	NEUTRAL	NA	5	"CD5,PGA3,PGA4,PGA5,VPS37C"
TCGA.AG.A01W.01A	11	60888398	60954156	16	-0.0771	NEUTRAL	NA	2	"CD5,VPS37C"
TCGA.DC.6158	11	60942715	63044991	474	-0.2916	NEUTRAL	NA	65	"AHNAK,ASRGL1,B3GAT3,BEST1,BSCL2,C11orf98,CHRM1,CPSF7,CYB561A3,DAGLA,DDB1,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,INCENP,INTS5,LBHD1,LRRC10B,LRRN4CL,METTL12,MTA2,MYRF,NXF1,PGA3,PGA4,PGA5,POLR2G,PPP1R32,RAB3IL1,ROM1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC3A2,STX5,SYT7,TAF6L,TKFC,TMEM138,TMEM179B,TMEM216,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,VWCE,WDR74,ZBTB3"
TCGA.AG.3611.01A	11	60970968	61026115	5	0.0698	NEUTRAL	NA	4	"PGA3,PGA4,PGA5,VWCE"
TCGA.AA.3509.01A	11	61015854	61957687	213	-0.0751	NEUTRAL	NA	23	"BEST1,CPSF7,CYB561A3,DAGLA,DDB1,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MYRF,PGA5,PPP1R32,RAB3IL1,SDHAF2,SYT7,TKFC,TMEM138,TMEM216,TMEM258,VWCE"
TCGA.AA.A00D.01A	11	61018562	71949066	1542	0.1027	NEUTRAL	NA	276	Too-Many
TCGA.AG.A01N.01A	11	61018562	134257391	5082	-0.0096	NEUTRAL	NA	696	Too-Many
TCGA.AA.A02H.01A	11	61026115	62848354	351	-0.3195	NEUTRAL	NA	61	"AHNAK,ASRGL1,B3GAT3,BEST1,BSCL2,C11orf98,CHRM1,CPSF7,CYB561A3,DAGLA,DDB1,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,INCENP,INTS5,LBHD1,LRRC10B,LRRN4CL,METTL12,MTA2,MYRF,NXF1,POLR2G,PPP1R32,RAB3IL1,ROM1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC22A24,SLC22A6,SLC22A8,SLC3A2,STX5,SYT7,TAF6L,TKFC,TMEM138,TMEM179B,TMEM216,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,VWCE,WDR74,ZBTB3"
TCGA.CM.6165.01A	11	61031933	61036343	4	0.296	NEUTRAL	NA	1	VWCE
TCGA.AA.A00Q.01A	11	61031933	61300424	86	-0.1441	NEUTRAL	NA	11	"CPSF7,CYB561A3,DDB1,LRRC10B,PPP1R32,SDHAF2,SYT7,TKFC,TMEM138,TMEM216,VWCE"
TCGA.AG.3909.01A	11	61032383	61044032	7	-0.0207	NEUTRAL	NA	1	VWCE
TCGA.CK.5914.01A	11	61032383	61121206	52	-0.1125	NEUTRAL	NA	4	"CYB561A3,DDB1,TKFC,VWCE"
TCGA.CM.6165.01A	11	61039088	134257391	5850	-0.0319	NEUTRAL	NA	695	Too-Many
TCGA.AG.3611.01A	11	61044032	61058699	8	-0.277	NEUTRAL	NA	1	VWCE
TCGA.A6.2681	11	61046875	61534009	81	0.0471	NEUTRAL	NA	13	"CPSF7,CYB561A3,DAGLA,DDB1,LRRC10B,MYRF,PPP1R32,SDHAF2,SYT7,TKFC,TMEM138,TMEM216,VWCE"
TCGA.AG.4009.01A	11	61053749	61083718	15	-0.0634	NEUTRAL	NA	2	"DDB1,VWCE"
TCGA.AA.A01C.01A	11	61070471	61161339	37	-0.2108	NEUTRAL	NA	5	"CYB561A3,DDB1,TKFC,TMEM138,TMEM216"
TCGA.AA.A00N.01A	11	61100313	61123961	18	0.183	NEUTRAL	NA	3	"CYB561A3,DDB1,TKFC"
TCGA.AA.A01Q.01A	11	61100313	61277029	45	0.1678	NEUTRAL	NA	9	"CPSF7,CYB561A3,DDB1,LRRC10B,PPP1R32,SDHAF2,TKFC,TMEM138,TMEM216"
TCGA.A6.3808.01A	11	61109853	61290515	47	-0.3992	NEUTRAL	NA	9	"CPSF7,CYB561A3,LRRC10B,PPP1R32,SDHAF2,SYT7,TKFC,TMEM138,TMEM216"
TCGA.AA.A01F.01A	11	61110762	61112690	4	0.1609	NEUTRAL	NA	1	TKFC
TCGA.AA.A01F.01A	11	61113181	63979075	428	-0.2948	NEUTRAL	NA	80	"AHNAK,ASRGL1,ATL3,B3GAT3,BEST1,BSCL2,C11orf84,C11orf95,C11orf98,CHRM1,COX8A,CPSF7,CYB561A3,DAGLA,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FERMT3,FLRT1,FTH1,GANAB,GNG3,HNRNPUL2,HRASLS2,HRASLS5,INCENP,INTS5,LBHD1,LGALS12,LRRC10B,LRRN4CL,MACROD1,MARK2,METTL12,MTA2,MYRF,NAA40,NXF1,OTUB1,PLA2G16,POLR2G,PPP1R32,RAB3IL1,RARRES3,RCOR2,ROM1,RTN3,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STIP1,STX5,SYT7,TAF6L,TKFC,TMEM138,TMEM179B,TMEM216,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AG.3909.01A	11	61131811	61205474	18	-0.1751	NEUTRAL	NA	4	"CPSF7,SDHAF2,TMEM138,TMEM216"
TCGA.AA.A01C.01A	11	61178388	62348937	172	-0.0337	NEUTRAL	NA	26	"AHNAK,ASRGL1,BEST1,CPSF7,DAGLA,EEF1G,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MYRF,PPP1R32,RAB3IL1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SYT7,TMEM258,TUT1"
TCGA.AG.4009.01A	11	61179203	61205045	9	-0.2156	NEUTRAL	NA	2	"CPSF7,SDHAF2"
TCGA.AG.A01W.01A	11	61244164	62051746	139	-0.0193	NEUTRAL	NA	18	"BEST1,DAGLA,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MYRF,PPP1R32,RAB3IL1,SCGB1D1,SCGB1D2,SCGB2A1,SCGB2A2,SYT7,TMEM258"
TCGA.CK.5914.01A	11	61249235	61276450	11	0.2916	NEUTRAL	NA	2	"LRRC10B,PPP1R32"
TCGA.AA.A00N.01A	11	61276450	61559910	55	-0.2889	NEUTRAL	NA	5	"DAGLA,LRRC10B,MYRF,SYT7,TMEM258"
TCGA.CK.5914.01A	11	61277029	61907645	111	-0.5054	NEUTRAL	NA	13	"BEST1,DAGLA,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MYRF,RAB3IL1,SYT7,TMEM258"
TCGA.AG.3909.01A	11	61290515	61300424	5	0.1013	NEUTRAL	NA	1	SYT7
TCGA.AG.4009.01A	11	61291252	61323526	6	-0.3752	NEUTRAL	NA	1	SYT7
TCGA.AG.3909.01A	11	61318799	61580674	50	-0.3893	NEUTRAL	NA	6	"DAGLA,FADS1,FEN1,MYRF,SYT7,TMEM258"
TCGA.AM.5820	11	61408448	61430987	6	-0.3304	NEUTRAL	NA	0	None
TCGA.BM.6198	11	61442812	127701007	21519	-0.43315	NEUTRAL	NA	654	Too-Many
TCGA.AG.4009.01A	11	61487574	61643293	58	0.3608	NEUTRAL	NA	7	"DAGLA,FADS1,FADS2,FADS3,FEN1,MYRF,TMEM258"
TCGA.A6.3808.01A	11	61496353	62565933	284	-0.3965	NEUTRAL	NA	43	"AHNAK,ASRGL1,B3GAT3,BEST1,BSCL2,C11orf98,DAGLA,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,INCENP,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,MYRF,NXF1,POLR2G,RAB3IL1,ROM1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,TAF6L,TMEM179B,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,ZBTB3"
TCGA.AA.A00Q.01A	11	61502303	62751783	263	-0.1955	NEUTRAL	NA	48	"AHNAK,ASRGL1,B3GAT3,BEST1,BSCL2,C11orf98,CHRM1,DAGLA,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,INCENP,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,MYRF,NXF1,POLR2G,RAB3IL1,ROM1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SLC22A6,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AG.3906.01A	11	61547261	61569838	14	-0.1121	NEUTRAL	NA	4	"FADS1,FEN1,MYRF,TMEM258"
TCGA.A6.2681	11	61549457	63755960	505	-0.4846	NEUTRAL	NA	66	"AHNAK,ASRGL1,ATL3,B3GAT3,BEST1,BSCL2,C11orf84,C11orf95,C11orf98,CHRM1,COX8A,EEF1G,EML3,FADS1,FADS2,FADS3,FEN1,FTH1,GANAB,GNG3,HNRNPUL2,HRASLS2,HRASLS5,INCENP,INTS5,LBHD1,LGALS12,LRRN4CL,MARK2,METTL12,MTA2,MYRF,NAA40,NXF1,OTUB1,PLA2G16,POLR2G,RAB3IL1,RARRES3,RCOR2,ROM1,RTN3,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TMEM258,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AG.3906.01A	11	61570271	61897253	40	0.2741	NEUTRAL	NA	7	"BEST1,FADS1,FADS2,FADS3,FTH1,INCENP,RAB3IL1"
TCGA.AA.A00N.01A	11	61582575	61723200	32	0.0772	NEUTRAL	NA	5	"BEST1,FADS1,FADS2,FADS3,RAB3IL1"
TCGA.AA.A010.01A	11	61605220	61643293	12	-0.3	NEUTRAL	NA	2	"FADS2,FADS3"
TCGA.AG.4009.01A	11	61644924	61732792	20	-0.3011	NEUTRAL	NA	4	"BEST1,FADS3,FTH1,RAB3IL1"
TCGA.AM.5820	11	61698487	63664095	452	0.0238	NEUTRAL	NA	55	"AHNAK,ASRGL1,ATL3,B3GAT3,BEST1,BSCL2,C11orf84,C11orf95,C11orf98,CHRM1,EEF1G,EML3,FTH1,GANAB,GNG3,HNRNPUL2,HRASLS2,HRASLS5,INCENP,INTS5,LBHD1,LGALS12,LRRN4CL,MARK2,METTL12,MTA2,NXF1,PLA2G16,POLR2G,RARRES3,ROM1,RTN3,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AA.A010.01A	11	61719232	61732792	12	-0.0691	NEUTRAL	NA	2	"BEST1,FTH1"
TCGA.AG.3909.01A	11	61719232	61912407	20	-0.4899	NEUTRAL	NA	3	"BEST1,FTH1,INCENP"
TCGA.AG.A023.01A	11	61732412	62372518	89	-0.2759	NEUTRAL	NA	14	"AHNAK,ASRGL1,EEF1G,EML3,FTH1,INCENP,MTA2,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,TUT1"
TCGA.AA.A00N.01A	11	61734736	61919237	16	-0.3141	NEUTRAL	NA	2	"FTH1,INCENP"
TCGA.AA.A01Q.01A	11	61895606	62105401	30	0.3055	NEUTRAL	NA	7	"ASRGL1,INCENP,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2"
TCGA.AG.3891.01A	11	61895606	62156568	31	0.0624	NEUTRAL	NA	7	"ASRGL1,INCENP,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2"
TCGA.AG.3906.01A	11	61905233	61957687	11	-0.4635	NEUTRAL	NA	1	INCENP
TCGA.CK.5914.01A	11	61908126	62066376	24	0.3174	NEUTRAL	NA	6	"INCENP,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2"
TCGA.AG.3906.01A	11	61959481	62159549	20	0.1052	NEUTRAL	NA	6	"ASRGL1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2"
TCGA.AZ.4684.01A	11	61959481	62284199	26	-0.3548	NEUTRAL	NA	8	"AHNAK,ASRGL1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2"
TCGA.AA.3982	11	61972910	62069364	58	0.2146	NEUTRAL	NA	4	"SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2"
TCGA.AG.4009.01A	11	62037620	62066376	6	-0.1693	NEUTRAL	NA	2	"SCGB1D4,SCGB2A2"
TCGA.AA.A00N.01A	11	62038323	62361297	50	-0.3895	NEUTRAL	NA	8	"AHNAK,ASRGL1,EEF1G,MTA2,SCGB1A1,SCGB1D4,SCGB2A2,TUT1"
TCGA.AG.A01W.01A	11	62122086	62145855	22	-0.1389	NEUTRAL	NA	1	ASRGL1
TCGA.AA.A01Q.01A	11	62123759	62505746	110	-0.4775	NEUTRAL	NA	21	"AHNAK,ASRGL1,B3GAT3,BSCL2,C11orf98,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,ROM1,SCGB1A1,TTC9C,TUT1,UBXN1,UQCC3"
TCGA.AA.3967.01A	11	62123759	62594561	165	0.2266	NEUTRAL	NA	28	"AHNAK,ASRGL1,B3GAT3,BSCL2,C11orf98,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,NXF1,POLR2G,ROM1,SCGB1A1,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,ZBTB3"
TCGA.AG.3881	11	62140068	67031967	755	-0.287	NEUTRAL	NA	174	Too-Many
TCGA.AG.3878	11	62143851	134944769	24319	0.0142	NEUTRAL	NA	668	Too-Many
TCGA.AG.3909.01A	11	62156568	62361297	42	0.3655	NEUTRAL	NA	6	"AHNAK,ASRGL1,EEF1G,MTA2,SCGB1A1,TUT1"
TCGA.AA.3509.01A	11	62156568	62847340	204	-0.063	NEUTRAL	NA	33	"AHNAK,ASRGL1,B3GAT3,BSCL2,C11orf98,CHRM1,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,NXF1,POLR2G,ROM1,SCGB1A1,SLC22A6,SLC22A8,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AG.3611.01A	11	62159549	62299925	18	-0.2175	NEUTRAL	NA	3	"AHNAK,ASRGL1,SCGB1A1"
TCGA.AG.A01W.01A	11	62170532	62188848	4	0.1918	NEUTRAL	NA	1	SCGB1A1
TCGA.AG.3906.01A	11	62186497	62387927	69	0.355	NEUTRAL	NA	8	"AHNAK,B3GAT3,EEF1G,EML3,MTA2,ROM1,SCGB1A1,TUT1"
TCGA.AG.A01W.01A	11	62226461	62252846	18	0.038	NEUTRAL	NA	1	AHNAK
TCGA.CK.5914.01A	11	62259165	62334820	22	0.2143	NEUTRAL	NA	2	"AHNAK,EEF1G"
TCGA.AZ.4684.01A	11	62284706	62847340	195	0.0283	NEUTRAL	NA	31	"AHNAK,B3GAT3,BSCL2,C11orf98,CHRM1,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,NXF1,POLR2G,ROM1,SLC22A6,SLC22A8,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AA.A010.01A	11	62285328	62298168	10	-0.2927	NEUTRAL	NA	1	AHNAK
TCGA.AA.A02K.01A	11	62298169	63662655	265	-0.069	NEUTRAL	NA	45	"AHNAK,ATL3,B3GAT3,BSCL2,C11orf84,C11orf95,C11orf98,CHRM1,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,HRASLS2,HRASLS5,INTS5,LBHD1,LGALS12,LRRN4CL,MARK2,METTL12,MTA2,NXF1,PLA2G16,POLR2G,RARRES3,ROM1,RTN3,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AA.A010.01A	11	62299264	62348937	19	0.0726	NEUTRAL	NA	3	"AHNAK,EEF1G,TUT1"
TCGA.AA.A00J.01A	11	62302473	134257391	4226	0.0337	NEUTRAL	NA	666	Too-Many
TCGA.AG.A01W.01A	11	62305912	62318280	10	0.3288	NEUTRAL	NA	1	AHNAK
TCGA.AG.A01W.01A	11	62324324	62359717	15	0.0618	NEUTRAL	NA	2	"EEF1G,TUT1"
TCGA.AA.3831	11	62337202	73632693	2192	0.0219	NEUTRAL	NA	262	Too-Many
TCGA.AF.3914.01A	11	62348531	62553690	107	-0.3841	NEUTRAL	NA	20	"B3GAT3,BSCL2,C11orf98,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,POLR2G,ROM1,TAF6L,TTC9C,TUT1,UBXN1,UQCC3,ZBTB3"
TCGA.AA.A01C.01A	11	62356452	62490041	80	-0.4349	NEUTRAL	NA	16	"B3GAT3,BSCL2,C11orf98,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,ROM1,TUT1,UBXN1,UQCC3"
TCGA.AG.4009.01A	11	62362401	62406418	45	-0.3544	NEUTRAL	NA	5	"B3GAT3,EML3,GANAB,MTA2,ROM1"
TCGA.AG.A015.01A	11	62365734	62502807	73	-0.2652	NEUTRAL	NA	16	"B3GAT3,BSCL2,C11orf98,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,ROM1,TTC9C,UBXN1,UQCC3"
TCGA.AA.A010.01A	11	62371144	62389278	18	-0.2024	NEUTRAL	NA	3	"B3GAT3,EML3,ROM1"
TCGA.AG.A023.01A	11	62378631	65792597	659	-0.1732	NEUTRAL	NA	132	Too-Many
TCGA.AG.A01J.01A	11	62396194	62556454	65	-0.3275	NEUTRAL	NA	16	"BSCL2,C11orf98,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,POLR2G,TAF6L,TMEM179B,TTC9C,UBXN1,UQCC3,ZBTB3"
TCGA.AG.4009.01A	11	62406783	62439199	11	0.1925	NEUTRAL	NA	6	"C11orf98,GANAB,INTS5,LBHD1,METTL12,UQCC3"
TCGA.AG.3906.01A	11	62413955	62445759	12	-0.0215	NEUTRAL	NA	7	"C11orf98,GANAB,INTS5,LBHD1,METTL12,UBXN1,UQCC3"
TCGA.AA.3861.01A	11	62433284	64323513	336	-0.1077	NEUTRAL	NA	60	"ATL3,BAD,BSCL2,C11orf84,C11orf95,CCDC88B,CHRM1,COX8A,DNAJC4,ESRRA,FERMT3,FKBP2,FLRT1,GNG3,GPR137,HNRNPUL2,HRASLS2,HRASLS5,KCNK4,LBHD1,LGALS12,LRRN4CL,MACROD1,MARK2,METTL12,NAA40,NUDT22,NXF1,OTUB1,PLA2G16,PLCB3,POLR2G,PPP1R14B,PRDX5,RARRES3,RCOR2,RPS6KA4,RTN3,SLC22A10,SLC22A11,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STIP1,STX5,TAF6L,TEX40,TMEM179B,TMEM223,TRMT112,TRPT1,TTC9C,UBXN1,UQCC3,VEGFB,WDR74,ZBTB3"
TCGA.AA.3862.01A	11	62433284	64323513	349	0.1307	NEUTRAL	NA	60	"ATL3,BAD,BSCL2,C11orf84,C11orf95,CCDC88B,CHRM1,COX8A,DNAJC4,ESRRA,FERMT3,FKBP2,FLRT1,GNG3,GPR137,HNRNPUL2,HRASLS2,HRASLS5,KCNK4,LBHD1,LGALS12,LRRN4CL,MACROD1,MARK2,METTL12,NAA40,NUDT22,NXF1,OTUB1,PLA2G16,PLCB3,POLR2G,PPP1R14B,PRDX5,RARRES3,RCOR2,RPS6KA4,RTN3,SLC22A10,SLC22A11,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STIP1,STX5,TAF6L,TEX40,TMEM179B,TMEM223,TRMT112,TRPT1,TTC9C,UBXN1,UQCC3,VEGFB,WDR74,ZBTB3"
TCGA.AG.A01W.01A	11	62433717	62508384	10	-0.286	NEUTRAL	NA	9	"BSCL2,GNG3,HNRNPUL2,LBHD1,LRRN4CL,METTL12,TTC9C,UBXN1,UQCC3"
TCGA.AG.4009.01A	11	62444150	62502807	27	-0.3974	NEUTRAL	NA	6	"BSCL2,GNG3,HNRNPUL2,LRRN4CL,TTC9C,UBXN1"
TCGA.AG.3909.01A	11	62494054	62543239	12	0.0618	NEUTRAL	NA	5	"HNRNPUL2,POLR2G,TAF6L,TTC9C,ZBTB3"
TCGA.AG.A00C.01A	11	62494054	62545403	14	0.0426	NEUTRAL	NA	5	"HNRNPUL2,POLR2G,TAF6L,TTC9C,ZBTB3"
TCGA.AA.A010.01A	11	62494054	62594561	41	-0.2526	NEUTRAL	NA	9	"HNRNPUL2,NXF1,POLR2G,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,ZBTB3"
TCGA.AA.A01C.01A	11	62494054	62677161	53	-0.4612	NEUTRAL	NA	12	"CHRM1,HNRNPUL2,NXF1,POLR2G,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,WDR74,ZBTB3"
TCGA.AG.4009.01A	11	62505746	62543239	9	0.3649	NEUTRAL	NA	4	"POLR2G,TAF6L,TTC9C,ZBTB3"
TCGA.D5.6538	11	62505999	134944769	24226	-0.0361	NEUTRAL	NA	648	Too-Many
TCGA.AG.A01W.01A	11	62517266	62607261	12	0.0866	NEUTRAL	NA	8	"NXF1,POLR2G,STX5,TAF6L,TMEM179B,TMEM223,WDR74,ZBTB3"
TCGA.AG.3906.01A	11	62519583	62594561	35	0.2654	NEUTRAL	NA	7	"NXF1,POLR2G,STX5,TAF6L,TMEM179B,TMEM223,ZBTB3"
TCGA.AA.A01Q.01A	11	62530297	62553690	11	-0.292	NEUTRAL	NA	2	"POLR2G,TAF6L"
TCGA.AG.A015.01A	11	62543239	62602884	31	-0.0592	NEUTRAL	NA	6	"NXF1,STX5,TAF6L,TMEM179B,TMEM223,WDR74"
TCGA.AG.4009.01A	11	62543798	62553690	6	-0.1899	NEUTRAL	NA	1	TAF6L
TCGA.AG.A00Y.01A	11	62549302	62561678	9	0.226	NEUTRAL	NA	4	"NXF1,TAF6L,TMEM179B,TMEM223"
TCGA.AG.A01J.01A	11	62565933	62655570	24	-0.3637	NEUTRAL	NA	4	"NXF1,SLC3A2,STX5,WDR74"
TCGA.AG.A00Y.01A	11	62567747	78154655	1920	0.2743	NEUTRAL	NA	293	Too-Many
TCGA.AA.A004.01A	11	62570854	62751783	28	-0.3049	NEUTRAL	NA	6	"CHRM1,NXF1,SLC22A6,SLC3A2,STX5,WDR74"
TCGA.AG.4009.01A	11	62591584	62603140	9	0.3525	NEUTRAL	NA	2	"STX5,WDR74"
TCGA.AG.3909.01A	11	62591584	62652602	16	-0.3378	NEUTRAL	NA	3	"SLC3A2,STX5,WDR74"
TCGA.AA.A00N.01A	11	62591584	62655570	19	-0.4744	NEUTRAL	NA	3	"SLC3A2,STX5,WDR74"
TCGA.AF.3914.01A	11	62591584	63413946	100	0.1424	NEUTRAL	NA	16	"ATL3,CHRM1,HRASLS2,HRASLS5,LGALS12,PLA2G16,RARRES3,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STX5,WDR74"
TCGA.AA.A01Q.01A	11	62591584	63520474	84	0.1621	NEUTRAL	NA	17	"ATL3,CHRM1,HRASLS2,HRASLS5,LGALS12,PLA2G16,RARRES3,RTN3,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STX5,WDR74"
TCGA.AG.3906.01A	11	62600405	63413946	95	-0.1189	NEUTRAL	NA	15	"ATL3,CHRM1,HRASLS2,HRASLS5,LGALS12,PLA2G16,RARRES3,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,WDR74"
TCGA.AA.3967.01A	11	62600405	76834687	1938	-0.1261	NEUTRAL	NA	274	Too-Many
TCGA.AG.3909.01A	11	62655570	62677161	2	0.1582	NEUTRAL	NA	2	"CHRM1,SLC3A2"
TCGA.AA.A00F.01A	11	62655570	63233574	43	0.0349	NEUTRAL	NA	9	"CHRM1,HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2"
TCGA.AA.A017.01A	11	62677161	62751783	9	0.0806	NEUTRAL	NA	2	"CHRM1,SLC22A6"
TCGA.AG.A01J.01A	11	62677161	62902110	20	0.0653	NEUTRAL	NA	4	"CHRM1,SLC22A24,SLC22A6,SLC22A8"
TCGA.AG.A015.01A	11	62677161	65403617	501	-0.1086	NEUTRAL	NA	86	"ARL2,ATG2A,ATL3,BAD,BATF2,C11orf84,C11orf85,C11orf95,CAPN1,CCDC88B,CDC42BPG,CDC42EP2,CDCA5,CHRM1,COX8A,DNAJC4,DPF2,EHBP1L1,EHD1,ESRRA,FAM89B,FAU,FERMT3,FKBP2,FLRT1,FRMD8,GPHA2,GPR137,HRASLS2,HRASLS5,KCNK4,KCNK7,LGALS12,LTBP3,MACROD1,MAP3K11,MAP4K2,MARK2,MEN1,MRPL49,NAA40,NAALADL1,NRXN2,NUDT22,OTUB1,PCNXL3,PLA2G16,PLCB3,POLA2,PPP1R14B,PPP2R5B,PRDX5,PYGM,RARRES3,RASGRP2,RCOR2,RPS6KA4,RTN3,SAC3D1,SCYL1,SF1,SLC22A10,SLC22A11,SLC22A12,SLC22A20,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC25A45,SNX15,SPDYC,SSSCA1,STIP1,SYVN1,TEX40,TIGD3,TM7SF2,TMEM262,TRMT112,TRPT1,VEGFB,VPS51,ZFPL1,ZNHIT2"
TCGA.AA.A01C.01A	11	62744218	62902110	20	0.2011	NEUTRAL	NA	3	"SLC22A24,SLC22A6,SLC22A8"
TCGA.AG.A00C.01A	11	62744565	63233574	48	-0.2229	NEUTRAL	NA	7	"HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9"
TCGA.AG.3891.01A	11	62744565	63283697	61	-0.087	NEUTRAL	NA	8	"HRASLS5,LGALS12,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9"
TCGA.AG.A025.01A	11	62748425	62751783	5	-0.1112	NEUTRAL	NA	1	SLC22A6
TCGA.AA.A00Q.01A	11	62760682	63138555	25	0.222	NEUTRAL	NA	5	"SLC22A10,SLC22A24,SLC22A25,SLC22A8,SLC22A9"
TCGA.AA.A01I.01A	11	62761996	62902110	11	0.2274	NEUTRAL	NA	2	"SLC22A24,SLC22A8"
TCGA.AA.3982	11	62817082	63230908	95	0.0111	NEUTRAL	NA	5	"HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AA.3850	11	62817082	63231258	96	-0.32475	NEUTRAL	NA	5	"HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.EI.7004	11	62847160	63995301	206	0.3652	NEUTRAL	NA	24	"ATL3,C11orf84,C11orf95,COX8A,FERMT3,FLRT1,HRASLS2,HRASLS5,LGALS12,MACROD1,MARK2,NAA40,NUDT22,OTUB1,PLA2G16,RARRES3,RCOR2,RTN3,SLC22A10,SLC22A24,SLC22A25,SLC22A9,STIP1,TRPT1"
TCGA.AG.4009.01A	11	62848354	63486134	72	0.2814	NEUTRAL	NA	11	"ATL3,HRASLS2,HRASLS5,LGALS12,PLA2G16,RARRES3,RTN3,SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AA.3811	11	62848697	63233995	90	-0.0165	NEUTRAL	NA	5	"HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AA.A010.01A	11	62863416	63230954	32	-0.4736	NEUTRAL	NA	5	"HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AG.A01W.01A	11	62987501	63168177	33	0.0783	NEUTRAL	NA	3	"SLC22A10,SLC22A25,SLC22A9"
TCGA.DC.6158	11	63050217	63334217	64	0.0391	NEUTRAL	NA	6	"HRASLS2,HRASLS5,LGALS12,RARRES3,SLC22A10,SLC22A9"
TCGA.AA.A02H.01A	11	63064775	63066938	3	-0.3442	NEUTRAL	NA	1	SLC22A10
TCGA.AA.A00Q.01A	11	63141067	65994939	612	-0.1169	NEUTRAL	NA	105	Too-Many
TCGA.AA.A017.01A	11	63175535	134257391	4445	-0.0614	NEUTRAL	NA	632	Too-Many
TCGA.AA.A02H.01A	11	63176096	73611268	1222	-0.2244	NEUTRAL	NA	229	Too-Many
TCGA.AA.3509.01A	11	63177206	76234151	2043	-0.0751	NEUTRAL	NA	260	Too-Many
TCGA.AZ.4684.01A	11	63177206	78523135	2284	0.0596	NEUTRAL	NA	284	Too-Many
TCGA.AA.A01I.01A	11	63230954	63282993	13	0.3007	NEUTRAL	NA	2	"HRASLS5,LGALS12"
TCGA.AG.A01J.01A	11	63230954	63967374	89	-0.3197	NEUTRAL	NA	17	"ATL3,C11orf84,C11orf95,COX8A,FLRT1,HRASLS2,HRASLS5,LGALS12,MACROD1,MARK2,NAA40,OTUB1,PLA2G16,RARRES3,RCOR2,RTN3,STIP1"
TCGA.AA.A01C.01A	11	63230954	73717922	1428	-0.183	NEUTRAL	NA	231	Too-Many
TCGA.AA.3941	11	63231375	78045070	3147	0.0344	NEUTRAL	NA	281	Too-Many
TCGA.AG.A00C.01A	11	63235781	63275979	5	0.2601	NEUTRAL	NA	2	"HRASLS5,LGALS12"
TCGA.AG.3909.01A	11	63235781	63682195	68	0.0845	NEUTRAL	NA	11	"ATL3,C11orf84,C11orf95,HRASLS2,HRASLS5,LGALS12,MARK2,PLA2G16,RARRES3,RCOR2,RTN3"
TCGA.AA.A00F.01A	11	63235781	64606896	278	0.3705	NEUTRAL	NA	43	"ATL3,BAD,C11orf84,C11orf95,CCDC88B,CDC42BPG,COX8A,DNAJC4,ESRRA,FERMT3,FKBP2,FLRT1,GPR137,HRASLS2,HRASLS5,KCNK4,LGALS12,MACROD1,MAP4K2,MARK2,MEN1,NAA40,NRXN2,NUDT22,OTUB1,PLA2G16,PLCB3,PPP1R14B,PRDX5,PYGM,RARRES3,RASGRP2,RCOR2,RPS6KA4,RTN3,SF1,SLC22A11,SLC22A12,STIP1,TEX40,TRMT112,TRPT1,VEGFB"
TCGA.AG.A01W.01A	11	63242730	63430120	29	-0.1736	NEUTRAL	NA	6	"ATL3,HRASLS2,HRASLS5,LGALS12,PLA2G16,RARRES3"
TCGA.AA.3811	11	63244772	74046974	2105	0.3705	NEUTRAL	NA	235	Too-Many
TCGA.CK.5914.01A	11	63256295	63449068	37	0.0483	NEUTRAL	NA	7	"ATL3,HRASLS2,HRASLS5,LGALS12,PLA2G16,RARRES3,RTN3"
TCGA.AG.A00C.01A	11	63276260	63283697	7	-0.2325	NEUTRAL	NA	1	LGALS12
TCGA.AG.A025.01A	11	63277198	65380470	457	-0.2428	NEUTRAL	NA	77	"ARL2,ATG2A,ATL3,BAD,BATF2,C11orf84,C11orf85,C11orf95,CAPN1,CCDC88B,CDC42BPG,CDC42EP2,CDCA5,COX8A,DNAJC4,DPF2,EHBP1L1,EHD1,ESRRA,FAM89B,FAU,FERMT3,FKBP2,FLRT1,FRMD8,GPHA2,GPR137,HRASLS2,KCNK4,KCNK7,LGALS12,LTBP3,MACROD1,MAP3K11,MAP4K2,MARK2,MEN1,MRPL49,NAA40,NAALADL1,NRXN2,NUDT22,OTUB1,PLA2G16,PLCB3,POLA2,PPP1R14B,PPP2R5B,PRDX5,PYGM,RARRES3,RASGRP2,RCOR2,RPS6KA4,RTN3,SAC3D1,SCYL1,SF1,SLC22A11,SLC22A12,SLC22A20,SLC25A45,SNX15,SPDYC,SSSCA1,STIP1,SYVN1,TEX40,TIGD3,TM7SF2,TMEM262,TRMT112,TRPT1,VEGFB,VPS51,ZFPL1,ZNHIT2"
TCGA.AA.A01I.01A	11	63283697	134257391	4569	-0.1762	NEUTRAL	NA	630	Too-Many
TCGA.AG.3891.01A	11	63304249	63411590	19	0.1792	NEUTRAL	NA	4	"ATL3,HRASLS2,PLA2G16,RARRES3"
TCGA.AG.A00C.01A	11	63304249	64359032	165	0.2403	NEUTRAL	NA	34	"ATL3,BAD,C11orf84,C11orf95,CCDC88B,COX8A,DNAJC4,ESRRA,FERMT3,FKBP2,FLRT1,GPR137,HRASLS2,KCNK4,MACROD1,MARK2,NAA40,NUDT22,OTUB1,PLA2G16,PLCB3,PPP1R14B,PRDX5,RARRES3,RCOR2,RPS6KA4,RTN3,SLC22A11,SLC22A12,STIP1,TEX40,TRMT112,TRPT1,VEGFB"
TCGA.A6.3808.01A	11	63325863	63675655	53	0.0369	NEUTRAL	NA	7	"ATL3,C11orf84,C11orf95,HRASLS2,MARK2,PLA2G16,RTN3"
TCGA.DC.6158	11	63343321	64197116	131	-0.4041	NEUTRAL	NA	30	"ATL3,BAD,C11orf84,C11orf95,CCDC88B,COX8A,DNAJC4,ESRRA,FERMT3,FKBP2,FLRT1,GPR137,KCNK4,MACROD1,MARK2,NAA40,NUDT22,OTUB1,PLA2G16,PLCB3,PPP1R14B,PRDX5,RCOR2,RPS6KA4,RTN3,STIP1,TEX40,TRMT112,TRPT1,VEGFB"
TCGA.AF.3914.01A	11	63419356	63521057	10	-0.2645	NEUTRAL	NA	2	"ATL3,RTN3"
TCGA.AG.A01W.01A	11	63440340	63523320	16	-0.2628	NEUTRAL	NA	1	RTN3
TCGA.CK.5914.01A	11	63472262	63782639	59	-0.4028	NEUTRAL	NA	9	"C11orf84,C11orf95,COX8A,MACROD1,MARK2,NAA40,OTUB1,RCOR2,RTN3"
TCGA.AG.4009.01A	11	63517426	63682195	28	-0.3947	NEUTRAL	NA	5	"C11orf84,C11orf95,MARK2,RCOR2,RTN3"
TCGA.AA.A004.01A	11	63517426	63919716	43	-0.2016	NEUTRAL	NA	10	"C11orf84,C11orf95,COX8A,FLRT1,MACROD1,MARK2,NAA40,OTUB1,RCOR2,RTN3"
TCGA.AA.A02K.01A	11	63662982	63683764	19	-0.4333	NEUTRAL	NA	2	"MARK2,RCOR2"
TCGA.AM.5820	11	63664881	71303995	1587	0.2804	NEUTRAL	NA	188	Too-Many
TCGA.AF.3914.01A	11	63706471	63918682	18	0.0643	NEUTRAL	NA	5	"COX8A,FLRT1,MACROD1,NAA40,OTUB1"
TCGA.AA.A02K.01A	11	63706472	63970884	34	0.1044	NEUTRAL	NA	6	"COX8A,FLRT1,MACROD1,NAA40,OTUB1,STIP1"
TCGA.AG.3906.01A	11	63713263	63764295	10	0.2051	NEUTRAL	NA	3	"COX8A,NAA40,OTUB1"
TCGA.AG.3909.01A	11	63713263	63782639	12	-0.3078	NEUTRAL	NA	4	"COX8A,MACROD1,NAA40,OTUB1"
TCGA.AG.4009.01A	11	63713263	63995000	40	0.1329	NEUTRAL	NA	9	"COX8A,FERMT3,FLRT1,MACROD1,NAA40,NUDT22,OTUB1,STIP1,TRPT1"
TCGA.AG.A01W.01A	11	63731366	64166628	118	0.1607	NEUTRAL	NA	22	"BAD,CCDC88B,COX8A,DNAJC4,ESRRA,FERMT3,FKBP2,FLRT1,GPR137,KCNK4,MACROD1,NUDT22,OTUB1,PLCB3,PPP1R14B,PRDX5,RPS6KA4,STIP1,TEX40,TRMT112,TRPT1,VEGFB"
TCGA.A6.2681	11	63759140	68820875	729	0.0118	NEUTRAL	NA	166	Too-Many
TCGA.AG.3906.01A	11	63766778	63883700	3	-0.2927	NEUTRAL	NA	2	"FLRT1,MACROD1"
TCGA.AF.3914.01A	11	63963090	63987653	15	0.0046	NEUTRAL	NA	2	"FERMT3,STIP1"
TCGA.AA.A004.01A	11	63970875	134128362	4209	-0.1373	NEUTRAL	NA	612	Too-Many
TCGA.AA.A02K.01A	11	63971472	76886367	1911	-0.1244	NEUTRAL	NA	250	Too-Many
TCGA.AG.3909.01A	11	63978486	64081690	55	-0.1943	NEUTRAL	NA	13	"BAD,DNAJC4,ESRRA,FERMT3,FKBP2,GPR137,KCNK4,NUDT22,PLCB3,PPP1R14B,TEX40,TRPT1,VEGFB"
TCGA.AG.A01J.01A	11	63979075	66974939	621	-0.2046	NEUTRAL	NA	120	Too-Many
TCGA.AA.A01F.01A	11	63986672	64004584	17	0.1921	NEUTRAL	NA	5	"DNAJC4,FERMT3,NUDT22,TRPT1,VEGFB"
TCGA.AG.A008.01A	11	63992008	126134860	4375	-0.1975	NEUTRAL	NA	578	Too-Many
TCGA.AA.A01F.01A	11	64009851	64427754	93	-0.1366	NEUTRAL	NA	15	"BAD,CCDC88B,ESRRA,FKBP2,GPR137,KCNK4,NRXN2,PLCB3,PPP1R14B,PRDX5,RPS6KA4,SLC22A11,SLC22A12,TEX40,TRMT112"
TCGA.CK.5914.01A	11	64012164	64507457	135	-0.474	NEUTRAL	NA	15	"BAD,CCDC88B,ESRRA,GPR137,KCNK4,NRXN2,PLCB3,PPP1R14B,PRDX5,RASGRP2,RPS6KA4,SLC22A11,SLC22A12,TEX40,TRMT112"
TCGA.AF.3914.01A	11	64023811	64044334	15	-0.1691	NEUTRAL	NA	2	"BAD,PLCB3"
TCGA.AG.3891.01A	11	64033331	64374621	63	0.0171	NEUTRAL	NA	13	"BAD,CCDC88B,ESRRA,GPR137,KCNK4,NRXN2,PLCB3,PRDX5,RPS6KA4,SLC22A11,SLC22A12,TEX40,TRMT112"
TCGA.EI.7004	11	64039997	107844199	13551	-0.006	NEUTRAL	NA	371	Too-Many
TCGA.AA.A01Q.01A	11	64064313	64367139	55	-0.2924	NEUTRAL	NA	9	"CCDC88B,ESRRA,KCNK4,PRDX5,RPS6KA4,SLC22A11,SLC22A12,TEX40,TRMT112"
TCGA.AG.4009.01A	11	64081690	64135567	23	-0.2016	NEUTRAL	NA	5	"CCDC88B,ESRRA,PRDX5,RPS6KA4,TRMT112"
TCGA.AF.3914.01A	11	64089011	64137655	22	-0.2792	NEUTRAL	NA	3	"CCDC88B,PRDX5,RPS6KA4"
TCGA.AA.A00N.01A	11	64107668	64457813	73	-0.2628	NEUTRAL	NA	5	"CCDC88B,NRXN2,RPS6KA4,SLC22A11,SLC22A12"
TCGA.AG.3906.01A	11	64109434	64374621	35	-0.0057	NEUTRAL	NA	5	"CCDC88B,NRXN2,RPS6KA4,SLC22A11,SLC22A12"
TCGA.AG.3909.01A	11	64126639	64418735	35	-0.2806	NEUTRAL	NA	4	"NRXN2,RPS6KA4,SLC22A11,SLC22A12"
TCGA.AG.4009.01A	11	64137655	64360857	13	0.3484	NEUTRAL	NA	3	"RPS6KA4,SLC22A11,SLC22A12"
TCGA.AF.3914.01A	11	64138744	64368160	16	0.3348	NEUTRAL	NA	3	"RPS6KA4,SLC22A11,SLC22A12"
TCGA.AA.A010.01A	11	64216965	64367139	17	0.3646	NEUTRAL	NA	2	"SLC22A11,SLC22A12"
TCGA.AG.A01W.01A	11	64281780	64290912	6	-0.2065	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	64291592	64329635	21	0.2001	NEUTRAL	NA	1	SLC22A11
TCGA.AG.A01W.01A	11	64330234	64360126	15	-0.2103	NEUTRAL	NA	2	"SLC22A11,SLC22A12"
TCGA.AG.A01W.01A	11	64360449	64451800	36	0.3237	NEUTRAL	NA	2	"NRXN2,SLC22A12"
TCGA.AG.4009.01A	11	64366243	64419500	13	-0.4249	NEUTRAL	NA	2	"NRXN2,SLC22A12"
TCGA.AG.A00C.01A	11	64367139	66475581	576	0.2654	NEUTRAL	NA	94	"ACTN3,AP5B1,ARL2,ATG2A,B4GAT1,BANF1,BATF2,BBS1,BRMS1,C11orf68,C11orf85,CAPN1,CATSPER1,CCDC85B,CCDC87,CCS,CD248,CDC42BPG,CDC42EP2,CDCA5,CFL1,CNIH2,CST6,CTSF,CTSW,DPF2,DPP3,DRAP1,EFEMP2,EHBP1L1,EHD1,EIF1AD,FAM89B,FAU,FIBP,FOSL1,FRMD8,GAL3ST3,GPHA2,KAT5,KCNK7,KLC2,LTBP3,MAP3K11,MAP4K2,MEN1,MRPL11,MRPL49,MUS81,NAALADL1,NPAS4,NRXN2,OVOL1,PACS1,PCNXL3,PELI3,POLA2,PPP2R5B,PYGM,RAB1B,RASGRP2,RBM14,RBM14-RBM4,RBM4,RBM4B,RELA,RIN1,RNASEH2C,SAC3D1,SART1,SCYL1,SF1,SF3B2,SIPA1,SLC22A12,SLC22A20,SLC25A45,SLC29A2,SNX15,SNX32,SPDYC,SPTBN2,SSSCA1,SYVN1,TIGD3,TM7SF2,TMEM151A,TMEM262,TSGA10IP,VPS51,YIF1A,ZDHHC24,ZFPL1,ZNHIT2"
TCGA.AA.A010.01A	11	64367809	64390228	6	-0.4202	NEUTRAL	NA	2	"NRXN2,SLC22A12"
TCGA.AF.3914.01A	11	64368894	64559330	62	-0.3447	NEUTRAL	NA	6	"MAP4K2,NRXN2,PYGM,RASGRP2,SF1,SLC22A12"
TCGA.AG.3891.01A	11	64390228	64534320	45	0.3475	NEUTRAL	NA	4	"NRXN2,PYGM,RASGRP2,SF1"
TCGA.AA.3861.01A	11	64415653	66515799	634	-0.1246	NEUTRAL	NA	94	"ACTN3,AP5B1,ARL2,ATG2A,B4GAT1,BANF1,BATF2,BBS1,BRMS1,C11orf68,C11orf80,C11orf85,CAPN1,CATSPER1,CCDC85B,CCDC87,CCS,CD248,CDC42BPG,CDC42EP2,CDCA5,CFL1,CNIH2,CST6,CTSF,CTSW,DPF2,DPP3,DRAP1,EFEMP2,EHBP1L1,EHD1,EIF1AD,FAM89B,FAU,FIBP,FOSL1,FRMD8,GAL3ST3,GPHA2,KAT5,KCNK7,KLC2,LTBP3,MAP3K11,MAP4K2,MEN1,MRPL11,MRPL49,MUS81,NAALADL1,NPAS4,NRXN2,OVOL1,PACS1,PCNXL3,PELI3,POLA2,PPP2R5B,PYGM,RAB1B,RASGRP2,RBM14,RBM14-RBM4,RBM4,RBM4B,RELA,RIN1,RNASEH2C,SAC3D1,SART1,SCYL1,SF1,SF3B2,SIPA1,SLC22A20,SLC25A45,SLC29A2,SNX15,SNX32,SPDYC,SPTBN2,SSSCA1,SYVN1,TIGD3,TM7SF2,TMEM151A,TMEM262,TSGA10IP,VPS51,YIF1A,ZDHHC24,ZFPL1,ZNHIT2"
TCGA.AA.3862.01A	11	64415653	66612290	667	0.0997	NEUTRAL	NA	95	"ACTN3,AP5B1,ARL2,ATG2A,B4GAT1,BANF1,BATF2,BBS1,BRMS1,C11orf68,C11orf80,C11orf85,CAPN1,CATSPER1,CCDC85B,CCDC87,CCS,CD248,CDC42BPG,CDC42EP2,CDCA5,CFL1,CNIH2,CST6,CTSF,CTSW,DPF2,DPP3,DRAP1,EFEMP2,EHBP1L1,EHD1,EIF1AD,FAM89B,FAU,FIBP,FOSL1,FRMD8,GAL3ST3,GPHA2,KAT5,KCNK7,KLC2,LTBP3,MAP3K11,MAP4K2,MEN1,MRPL11,MRPL49,MUS81,NAALADL1,NPAS4,NRXN2,OVOL1,PACS1,PCNXL3,PELI3,POLA2,PPP2R5B,PYGM,RAB1B,RASGRP2,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RELA,RIN1,RNASEH2C,SAC3D1,SART1,SCYL1,SF1,SF3B2,SIPA1,SLC22A20,SLC25A45,SLC29A2,SNX15,SNX32,SPDYC,SPTBN2,SSSCA1,SYVN1,TIGD3,TM7SF2,TMEM151A,TMEM262,TSGA10IP,VPS51,YIF1A,ZDHHC24,ZFPL1,ZNHIT2"
TCGA.AG.4009.01A	11	64427754	64453077	6	0.3653	NEUTRAL	NA	1	NRXN2
TCGA.AA.A010.01A	11	64427754	64457813	7	-0.4518	NEUTRAL	NA	1	NRXN2
TCGA.AA.A01F.01A	11	64428278	64502976	14	-0.5033	NEUTRAL	NA	2	"NRXN2,RASGRP2"
TCGA.AG.4009.01A	11	64457813	64504173	9	-0.3119	NEUTRAL	NA	2	"NRXN2,RASGRP2"
TCGA.AG.3909.01A	11	64460234	65108385	218	-0.2603	NEUTRAL	NA	32	"ARL2,ATG2A,BATF2,C11orf85,CAPN1,CDC42BPG,CDC42EP2,CDCA5,DPF2,EHD1,FAU,GPHA2,MAP4K2,MEN1,MRPL49,NAALADL1,NRXN2,POLA2,PPP2R5B,PYGM,RASGRP2,SAC3D1,SF1,SLC22A20,SNX15,SPDYC,SYVN1,TM7SF2,TMEM262,VPS51,ZFPL1,ZNHIT2"
TCGA.AA.A01Q.01A	11	64480461	64503326	8	-0.1246	NEUTRAL	NA	2	"NRXN2,RASGRP2"
TCGA.AA.A01F.01A	11	64503326	64522700	20	-0.059	NEUTRAL	NA	2	"PYGM,RASGRP2"
TCGA.CK.5914.01A	11	64521304	64535548	12	-0.4884	NEUTRAL	NA	2	"PYGM,SF1"
TCGA.AA.A01F.01A	11	64525203	64535037	7	-0.4028	NEUTRAL	NA	2	"PYGM,SF1"
TCGA.AA.A01Q.01A	11	64532819	64535548	5	-0.0234	NEUTRAL	NA	1	SF1
TCGA.AG.A01W.01A	11	64538189	64571993	16	0.0028	NEUTRAL	NA	3	"MAP4K2,MEN1,SF1"
TCGA.AA.A01F.01A	11	64543870	64575312	19	-0.0917	NEUTRAL	NA	3	"MAP4K2,MEN1,SF1"
TCGA.CK.5914.01A	11	64556993	64700590	78	-0.453	NEUTRAL	NA	6	"ATG2A,CDC42BPG,EHD1,MAP4K2,MEN1,PPP2R5B"
TCGA.AF.3914.01A	11	64577105	64641853	24	-0.2676	NEUTRAL	NA	3	"CDC42BPG,EHD1,MEN1"
TCGA.AG.3891.01A	11	64577105	65003832	138	0.1312	NEUTRAL	NA	24	"ARL2,ATG2A,BATF2,C11orf85,CAPN1,CDC42BPG,CDCA5,EHD1,FAU,GPHA2,MEN1,MRPL49,NAALADL1,PPP2R5B,SAC3D1,SLC22A20,SNX15,SPDYC,SYVN1,TM7SF2,TMEM262,VPS51,ZFPL1,ZNHIT2"
TCGA.AG.4009.01A	11	64591887	64603549	13	0.0793	NEUTRAL	NA	1	CDC42BPG
TCGA.AA.A01F.01A	11	64596936	64604180	11	-0.1463	NEUTRAL	NA	1	CDC42BPG
TCGA.AG.4009.01A	11	64604180	64622777	6	-0.2566	NEUTRAL	NA	2	"CDC42BPG,EHD1"
TCGA.AA.A01F.01A	11	64606124	64609074	5	0.3117	NEUTRAL	NA	1	CDC42BPG
TCGA.AG.A01W.01A	11	64608701	71405076	1024	0.0345	NEUTRAL	NA	155	Too-Many
TCGA.AG.3906.01A	11	64609074	65003832	113	-0.0465	NEUTRAL	NA	23	"ARL2,ATG2A,BATF2,C11orf85,CAPN1,CDC42BPG,CDCA5,EHD1,FAU,GPHA2,MRPL49,NAALADL1,PPP2R5B,SAC3D1,SLC22A20,SNX15,SPDYC,SYVN1,TM7SF2,TMEM262,VPS51,ZFPL1,ZNHIT2"
TCGA.AA.A01F.01A	11	64621798	65714313	239	-0.2112	NEUTRAL	NA	53	"AP5B1,ARL2,ATG2A,BATF2,C11orf68,C11orf85,CAPN1,CCDC85B,CDC42EP2,CDCA5,CFL1,CTSW,DPF2,DRAP1,EFEMP2,EHBP1L1,EHD1,FAM89B,FAU,FIBP,FOSL1,FRMD8,GPHA2,KAT5,KCNK7,LTBP3,MAP3K11,MRPL49,MUS81,NAALADL1,OVOL1,PCNXL3,POLA2,PPP2R5B,RELA,RNASEH2C,SAC3D1,SCYL1,SIPA1,SLC22A20,SLC25A45,SNX15,SNX32,SPDYC,SSSCA1,SYVN1,TIGD3,TM7SF2,TMEM262,TSGA10IP,VPS51,ZFPL1,ZNHIT2"
TCGA.AA.A00F.01A	11	64621798	71952097	909	0.3404	NEUTRAL	NA	169	Too-Many
TCGA.AA.A010.01A	11	64641853	65101286	155	0.0711	NEUTRAL	NA	25	"ARL2,ATG2A,BATF2,C11orf85,CAPN1,CDC42EP2,CDCA5,DPF2,EHD1,FAU,GPHA2,MRPL49,NAALADL1,POLA2,PPP2R5B,SAC3D1,SLC22A20,SNX15,SPDYC,SYVN1,TM7SF2,TMEM262,VPS51,ZFPL1,ZNHIT2"
TCGA.DM.A1D7	11	64659836	74895212	2132	-0.4217	NEUTRAL	NA	201	Too-Many
TCGA.AA.A01Q.01A	11	64679274	65628176	215	-0.2514	NEUTRAL	NA	44	"AP5B1,ARL2,ATG2A,BATF2,C11orf85,CAPN1,CDC42EP2,CDCA5,CFL1,DPF2,EHBP1L1,FAM89B,FAU,FRMD8,GPHA2,KAT5,KCNK7,LTBP3,MAP3K11,MRPL49,MUS81,NAALADL1,OVOL1,PCNXL3,POLA2,PPP2R5B,RELA,RNASEH2C,SAC3D1,SCYL1,SIPA1,SLC22A20,SLC25A45,SNX15,SNX32,SPDYC,SSSCA1,SYVN1,TIGD3,TM7SF2,TMEM262,VPS51,ZFPL1,ZNHIT2"
TCGA.AF.3914.01A	11	64707098	65298059	142	-0.2058	NEUTRAL	NA	25	"ARL2,BATF2,C11orf85,CAPN1,CDC42EP2,CDCA5,DPF2,FAU,FRMD8,MRPL49,NAALADL1,POLA2,SAC3D1,SCYL1,SLC22A20,SLC25A45,SNX15,SPDYC,SYVN1,TIGD3,TM7SF2,TMEM262,VPS51,ZFPL1,ZNHIT2"
TCGA.CK.5914.01A	11	64781622	65036094	92	-0.4404	NEUTRAL	NA	17	"ARL2,CAPN1,CDCA5,FAU,MRPL49,NAALADL1,POLA2,SAC3D1,SLC22A20,SNX15,SPDYC,SYVN1,TM7SF2,TMEM262,VPS51,ZFPL1,ZNHIT2"
TCGA.AG.4009.01A	11	64785799	64815439	14	-0.3757	NEUTRAL	NA	4	"ARL2,NAALADL1,SAC3D1,SNX15"
TCGA.AG.4009.01A	11	64876740	64891926	14	-0.1274	NEUTRAL	NA	5	"FAU,MRPL49,TM7SF2,VPS51,ZNHIT2"
TCGA.AA.A00L.01A	11	64884757	65977796	219	-0.0543	NEUTRAL	NA	46	"AP5B1,BANF1,C11orf68,CAPN1,CATSPER1,CCDC85B,CDC42EP2,CFL1,CST6,CTSW,DPF2,DRAP1,EFEMP2,EHBP1L1,EIF1AD,FAM89B,FAU,FIBP,FOSL1,FRMD8,GAL3ST3,KAT5,KCNK7,LTBP3,MAP3K11,MRPL49,MUS81,OVOL1,PACS1,PCNXL3,POLA2,RELA,RNASEH2C,SART1,SCYL1,SF3B2,SIPA1,SLC22A20,SLC25A45,SNX32,SPDYC,SSSCA1,SYVN1,TIGD3,TSGA10IP,ZNHIT2"
TCGA.AA.A029.01A	11	64889771	73675904	915	-0.4271	NEUTRAL	NA	169	Too-Many
TCGA.AG.A011.01A	11	64891926	65055145	40	0.3773	NEUTRAL	NA	6	"CAPN1,MRPL49,POLA2,SLC22A20,SPDYC,SYVN1"
TCGA.AG.4009.01A	11	64937622	64955826	10	-0.4211	NEUTRAL	NA	2	"CAPN1,SPDYC"
TCGA.AG.4009.01A	11	64972107	65064562	28	0.2888	NEUTRAL	NA	3	"CAPN1,POLA2,SLC22A20"
TCGA.AG.3906.01A	11	65004124	65149305	36	0.3422	NEUTRAL	NA	5	"CDC42EP2,DPF2,POLA2,SLC25A45,TIGD3"
TCGA.CK.5914.01A	11	65043341	65064562	14	0.1183	NEUTRAL	NA	1	POLA2
TCGA.AG.A011.01A	11	65056439	134257391	4277	0.0456	NEUTRAL	NA	566	Too-Many
TCGA.AA.A010.01A	11	65143871	65149305	4	-0.4575	NEUTRAL	NA	1	SLC25A45
TCGA.AG.3891.01A	11	65143871	65172298	12	0.1775	NEUTRAL	NA	2	"FRMD8,SLC25A45"
TCGA.AG.4009.01A	11	65143871	65172298	12	0.2767	NEUTRAL	NA	2	"FRMD8,SLC25A45"
TCGA.AA.A010.01A	11	65154450	65292598	11	0.3453	NEUTRAL	NA	2	"FRMD8,SCYL1"
TCGA.AG.3906.01A	11	65154450	65294203	11	-0.0392	NEUTRAL	NA	2	"FRMD8,SCYL1"
TCGA.AG.3909.01A	11	65154450	65479690	84	-0.18	NEUTRAL	NA	12	"EHBP1L1,FAM89B,FRMD8,KAT5,KCNK7,LTBP3,MAP3K11,PCNXL3,RELA,SCYL1,SIPA1,SSSCA1"
TCGA.AG.3891.01A	11	65300112	65340836	23	0.3676	NEUTRAL	NA	4	"FAM89B,LTBP3,SCYL1,SSSCA1"
TCGA.AG.A01L.01A	11	65308342	65412379	37	0.1219	NEUTRAL	NA	8	"EHBP1L1,FAM89B,KCNK7,LTBP3,MAP3K11,PCNXL3,SIPA1,SSSCA1"
TCGA.AG.3891.01A	11	65365790	65408375	28	0.1475	NEUTRAL	NA	3	"MAP3K11,PCNXL3,SIPA1"
TCGA.AG.3906.01A	11	65373189	65403617	21	0.2607	NEUTRAL	NA	2	"MAP3K11,PCNXL3"
TCGA.AF.3914.01A	11	65374749	66239788	239	-0.5142	NEUTRAL	NA	40	"AP5B1,B4GAT1,BANF1,BRMS1,C11orf68,CATSPER1,CCDC85B,CD248,CFL1,CNIH2,CST6,CTSW,DRAP1,EFEMP2,EIF1AD,FIBP,FOSL1,GAL3ST3,KAT5,KLC2,MAP3K11,MRPL11,MUS81,NPAS4,OVOL1,PACS1,PCNXL3,PELI3,RAB1B,RELA,RIN1,RNASEH2C,SART1,SF3B2,SIPA1,SLC29A2,SNX32,TMEM151A,TSGA10IP,YIF1A"
TCGA.AG.A025.01A	11	65385391	65638609	57	-0.021	NEUTRAL	NA	11	"AP5B1,CFL1,EFEMP2,KAT5,MUS81,OVOL1,PCNXL3,RELA,RNASEH2C,SIPA1,SNX32"
TCGA.AG.A015.01A	11	65423096	65715445	63	0.0075	NEUTRAL	NA	16	"AP5B1,C11orf68,CCDC85B,CFL1,CTSW,DRAP1,EFEMP2,FIBP,FOSL1,KAT5,MUS81,OVOL1,RELA,RNASEH2C,SNX32,TSGA10IP"
TCGA.AG.A01L.01A	11	65429121	65487548	9	-0.2787	NEUTRAL	NA	3	"KAT5,RELA,RNASEH2C"
TCGA.AG.3906.01A	11	65479690	65488008	9	-0.4578	NEUTRAL	NA	2	"KAT5,RNASEH2C"
TCGA.AG.3891.01A	11	65479690	65623076	25	0.0675	NEUTRAL	NA	6	"AP5B1,CFL1,KAT5,OVOL1,RNASEH2C,SNX32"
TCGA.AG.3909.01A	11	65488008	65562527	7	-0.1928	NEUTRAL	NA	3	"AP5B1,OVOL1,RNASEH2C"
TCGA.AG.4009.01A	11	65545309	65628176	19	-0.5086	NEUTRAL	NA	5	"AP5B1,CFL1,MUS81,OVOL1,SNX32"
TCGA.AG.A01L.01A	11	65545309	65688301	43	0.2799	NEUTRAL	NA	12	"AP5B1,C11orf68,CCDC85B,CFL1,CTSW,DRAP1,EFEMP2,FIBP,FOSL1,MUS81,OVOL1,SNX32"
TCGA.AG.3906.01A	11	65547070	65630533	18	0.2096	NEUTRAL	NA	5	"AP5B1,CFL1,MUS81,OVOL1,SNX32"
TCGA.AG.3909.01A	11	65628176	65746046	49	-0.2734	NEUTRAL	NA	10	"C11orf68,CCDC85B,CTSW,DRAP1,EFEMP2,FIBP,FOSL1,MUS81,SART1,TSGA10IP"
TCGA.AG.A025.01A	11	65648839	126134860	3898	-0.1005	NEUTRAL	NA	507	Too-Many
TCGA.DC.6158	11	65653308	66066663	75	-0.0348	NEUTRAL	NA	19	"BANF1,C11orf68,CATSPER1,CCDC85B,CNIH2,CST6,DRAP1,EIF1AD,FIBP,FOSL1,GAL3ST3,KLC2,PACS1,RAB1B,SART1,SF3B2,TMEM151A,TSGA10IP,YIF1A"
TCGA.AG.4009.01A	11	65661447	65688750	8	-0.5145	NEUTRAL	NA	3	"C11orf68,DRAP1,FOSL1"
TCGA.CK.5914.01A	11	65688750	65729200	9	0.1732	NEUTRAL	NA	3	"DRAP1,SART1,TSGA10IP"
TCGA.AG.A01L.01A	11	65688750	65743825	14	-0.3806	NEUTRAL	NA	3	"DRAP1,SART1,TSGA10IP"
TCGA.AA.A01Q.01A	11	65688750	65746046	13	0.1981	NEUTRAL	NA	3	"DRAP1,SART1,TSGA10IP"
TCGA.AG.3891.01A	11	65688750	65786295	27	-0.1021	NEUTRAL	NA	7	"BANF1,CATSPER1,CST6,DRAP1,EIF1AD,SART1,TSGA10IP"
TCGA.AA.A010.01A	11	65713108	65746046	19	0.0678	NEUTRAL	NA	2	"SART1,TSGA10IP"
TCGA.AG.4009.01A	11	65713108	65746046	14	0.1268	NEUTRAL	NA	2	"SART1,TSGA10IP"
TCGA.AG.3906.01A	11	65713108	65790271	28	0.0853	NEUTRAL	NA	6	"BANF1,CATSPER1,CST6,EIF1AD,SART1,TSGA10IP"
TCGA.CK.5914.01A	11	65731532	65746046	11	-0.4625	NEUTRAL	NA	1	SART1
TCGA.AG.A015.01A	11	65743825	66010336	56	-0.1072	NEUTRAL	NA	8	"BANF1,CATSPER1,CST6,EIF1AD,GAL3ST3,PACS1,SART1,SF3B2"
TCGA.AG.A01L.01A	11	65744447	65787574	14	0.2747	NEUTRAL	NA	5	"BANF1,CATSPER1,CST6,EIF1AD,SART1"
TCGA.AA.A01Q.01A	11	65766033	66010336	56	-0.4536	NEUTRAL	NA	7	"BANF1,CATSPER1,CST6,EIF1AD,GAL3ST3,PACS1,SF3B2"
TCGA.AA.A01F.01A	11	65767496	134252583	3454	-0.3117	NEUTRAL	NA	534	Too-Many
TCGA.AG.4009.01A	11	65786295	65826269	16	-0.3878	NEUTRAL	NA	3	"CATSPER1,GAL3ST3,SF3B2"
TCGA.AG.3909.01A	11	65786295	66189584	92	-0.2424	NEUTRAL	NA	15	"B4GAT1,BRMS1,CATSPER1,CD248,CNIH2,GAL3ST3,KLC2,NPAS4,PACS1,RAB1B,RIN1,SF3B2,SLC29A2,TMEM151A,YIF1A"
TCGA.AG.A01L.01A	11	65788926	65830443	19	-0.2847	NEUTRAL	NA	3	"CATSPER1,GAL3ST3,SF3B2"
TCGA.AG.A023.01A	11	65824262	73745549	784	-0.201	NEUTRAL	NA	130	Too-Many
TCGA.AG.A01L.01A	11	65830824	65836099	3	0.2393	NEUTRAL	NA	1	SF3B2
TCGA.AA.A010.01A	11	65837906	66001208	14	0.2921	NEUTRAL	NA	1	PACS1
TCGA.AA.A00N.01A	11	65837906	66010336	21	0.1414	NEUTRAL	NA	1	PACS1
TCGA.A6.A56B	11	65949673	77852106	2657	-0.0123	NEUTRAL	NA	175	Too-Many
TCGA.AG.A01L.01A	11	65960913	65999596	11	-0.2869	NEUTRAL	NA	1	PACS1
TCGA.AG.3906.01A	11	65960913	66029234	22	0.0897	NEUTRAL	NA	2	"KLC2,PACS1"
TCGA.CK.5914.01A	11	65960913	66190603	78	-0.4624	NEUTRAL	NA	12	"B4GAT1,BRMS1,CD248,CNIH2,KLC2,NPAS4,PACS1,RAB1B,RIN1,SLC29A2,TMEM151A,YIF1A"
TCGA.AA.A00Q.01A	11	65997968	66045872	25	-0.5074	NEUTRAL	NA	4	"CNIH2,KLC2,PACS1,RAB1B"
TCGA.AA.A00L.01A	11	65999596	66113961	52	-0.1683	NEUTRAL	NA	10	"B4GAT1,BRMS1,CD248,CNIH2,KLC2,PACS1,RAB1B,RIN1,TMEM151A,YIF1A"
TCGA.AG.A01L.01A	11	66000381	66113961	43	0.1524	NEUTRAL	NA	10	"B4GAT1,BRMS1,CD248,CNIH2,KLC2,PACS1,RAB1B,RIN1,TMEM151A,YIF1A"
TCGA.AA.A010.01A	11	66001561	66010336	7	-0.3383	NEUTRAL	NA	1	PACS1
TCGA.AA.A02W.01A	11	66003304	117061307	2698	0.0603	NEUTRAL	NA	360	Too-Many
TCGA.AA.A00Q.01A	11	66049663	66294083	77	-0.2092	NEUTRAL	NA	13	"B4GAT1,BBS1,BRMS1,CD248,CNIH2,DPP3,MRPL11,NPAS4,PELI3,RIN1,SLC29A2,TMEM151A,YIF1A"
TCGA.AG.A015.01A	11	66052056	66325153	85	-0.069	NEUTRAL	NA	14	"ACTN3,B4GAT1,BBS1,BRMS1,CD248,DPP3,MRPL11,NPAS4,PELI3,RIN1,SLC29A2,TMEM151A,YIF1A,ZDHHC24"
TCGA.AG.3602	11	66064849	134944769	23518	0	NEUTRAL	NA	522	Too-Many
TCGA.DC.6158	11	66066992	66804094	70	-0.3037	NEUTRAL	NA	26	"ACTN3,B4GAT1,BBS1,BRMS1,C11orf80,C11orf86,CCDC87,CCS,CD248,CTSF,DPP3,LRFN4,MRPL11,NPAS4,PC,PELI3,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RIN1,SLC29A2,SPTBN2,SYT12,ZDHHC24"
TCGA.AG.3891.01A	11	66082173	71903170	659	0.1645	NEUTRAL	NA	100	"ACTN3,ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANAPC15,ANKRD13D,ANO1,B4GAT1,BBS1,BRMS1,C11orf24,C11orf80,C11orf86,CABP2,CABP4,CARNS1,CCDC87,CCND1,CCS,CD248,CDK2AP2,CHKA,CLCF1,CORO1B,CPT1A,CTSF,CTTN,DEFB108B,DHCR7,DPP3,FADD,FAM86C1,FGF19,FGF3,FGF4,FOLR1,FOLR3,GAL,GPR152,GSTP1,IGHMBP2,IL18BP,KDM2A,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRFN4,LRP5,LRTOMT,MRGPRD,MRGPRF,MRPL11,MRPL21,MTL5,MYEOV,NADSYN1,NDUFS8,NDUFV1,NPAS4,NUDT8,NUMA1,ORAOV1,PC,PELI3,PITPNM1,POLD4,PPFIA1,PPP1CA,PPP6R3,PTPRCAP,RAD9A,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RHOD,RIN1,RNF121,RPS6KB2,SHANK2,SLC29A2,SPTBN2,SSH3,SUV420H1,SYT12,TBC1D10C,TBX10,TCIRG1,TMEM134,TPCN2,UNC93B1,ZDHHC24,ZNF705E"
TCGA.AA.A00L.01A	11	66130855	66138659	9	0.3103	NEUTRAL	NA	1	SLC29A2
TCGA.AG.4009.01A	11	66130855	66188609	10	-0.045	NEUTRAL	NA	2	"NPAS4,SLC29A2"
TCGA.AG.A01L.01A	11	66130855	66193355	15	-0.2362	NEUTRAL	NA	2	"NPAS4,SLC29A2"
TCGA.AA.A01Q.01A	11	66130855	66330220	71	-0.4476	NEUTRAL	NA	8	"ACTN3,BBS1,DPP3,MRPL11,NPAS4,PELI3,SLC29A2,ZDHHC24"
TCGA.AG.3906.01A	11	66133349	66206052	19	0.0244	NEUTRAL	NA	3	"MRPL11,NPAS4,SLC29A2"
TCGA.AA.A010.01A	11	66135961	66206052	16	-0.4331	NEUTRAL	NA	3	"MRPL11,NPAS4,SLC29A2"
TCGA.AA.A00L.01A	11	66188609	66252592	21	-0.1438	NEUTRAL	NA	4	"DPP3,MRPL11,NPAS4,PELI3"
TCGA.AG.A01L.01A	11	66203428	66243040	11	0.3078	NEUTRAL	NA	2	"MRPL11,PELI3"
TCGA.CK.5914.01A	11	66206052	66260501	16	-0.461	NEUTRAL	NA	3	"DPP3,MRPL11,PELI3"
TCGA.D5.6932	11	66222136	134944769	23561	0.0088	NEUTRAL	NA	515	Too-Many
TCGA.AG.3909.01A	11	66239788	66260501	12	0.035	NEUTRAL	NA	2	"DPP3,PELI3"
TCGA.AF.3914.01A	11	66240695	66321461	37	0.1301	NEUTRAL	NA	5	"ACTN3,BBS1,DPP3,PELI3,ZDHHC24"
TCGA.AG.3906.01A	11	66241198	66335418	50	0.1188	NEUTRAL	NA	6	"ACTN3,BBS1,CTSF,DPP3,PELI3,ZDHHC24"
TCGA.AG.A01L.01A	11	66249625	66325153	36	-0.2224	NEUTRAL	NA	4	"ACTN3,BBS1,DPP3,ZDHHC24"
TCGA.AA.A00L.01A	11	66253994	66299069	24	0.268	NEUTRAL	NA	2	"BBS1,DPP3"
TCGA.AA.A00N.01A	11	66258693	66313143	25	0.3235	NEUTRAL	NA	3	"BBS1,DPP3,ZDHHC24"
TCGA.AA.A010.01A	11	66258693	66314377	26	0.2875	NEUTRAL	NA	4	"ACTN3,BBS1,DPP3,ZDHHC24"
TCGA.CK.5914.01A	11	66260957	66314377	23	0.0714	NEUTRAL	NA	4	"ACTN3,BBS1,DPP3,ZDHHC24"
TCGA.AA.A00L.01A	11	66299369	66330220	12	-0.0472	NEUTRAL	NA	3	"ACTN3,BBS1,ZDHHC24"
TCGA.CK.5914.01A	11	66318658	67810797	310	-0.4833	NEUTRAL	NA	46	"ACTN3,ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANKRD13D,C11orf80,C11orf86,CABP2,CABP4,CARNS1,CCDC87,CCS,CDK2AP2,CLCF1,CORO1B,CTSF,GPR152,GSTP1,KDM2A,LRFN4,NDUFS8,NDUFV1,NUDT8,PC,PITPNM1,POLD4,PPP1CA,PTPRCAP,RAD9A,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RHOD,RPS6KB2,SPTBN2,SSH3,SYT12,TBC1D10C,TBX10,TCIRG1,TMEM134,UNC93B1"
TCGA.AG.4009.01A	11	66321461	66331342	11	-0.4622	NEUTRAL	NA	2	"ACTN3,CTSF"
TCGA.A6.3808.01A	11	66324562	67250578	222	-0.4838	NEUTRAL	NA	33	"ACTN3,ADRBK1,AIP,ANKRD13D,C11orf80,C11orf86,CABP4,CARNS1,CCDC87,CCS,CLCF1,CORO1B,CTSF,GPR152,KDM2A,LRFN4,PC,POLD4,PPP1CA,PTPRCAP,RAD9A,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RHOD,RPS6KB2,SPTBN2,SSH3,SYT12,TBC1D10C,TMEM134"
TCGA.AA.A00Q.01A	11	66331342	66613320	57	-0.3178	NEUTRAL	NA	10	"C11orf80,CCDC87,CCS,CTSF,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,SPTBN2"
TCGA.A6.6654	11	66335307	134944769	23543	-0.0891	NEUTRAL	NA	510	Too-Many
TCGA.AA.A00L.01A	11	66335418	66482656	43	-0.076	NEUTRAL	NA	8	"CCDC87,CCS,CTSF,RBM14,RBM14-RBM4,RBM4,RBM4B,SPTBN2"
TCGA.AG.A015.01A	11	66357900	67208564	145	-0.0851	NEUTRAL	NA	27	"ADRBK1,ANKRD13D,C11orf80,C11orf86,CARNS1,CCDC87,CCS,CLCF1,CORO1B,KDM2A,LRFN4,PC,POLD4,PPP1CA,PTPRCAP,RAD9A,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RHOD,RPS6KB2,SPTBN2,SSH3,SYT12,TBC1D10C"
TCGA.AG.A01L.01A	11	66358275	71195311	440	-0.0501	NEUTRAL	NA	70	"ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANKRD13D,ANO1,C11orf24,C11orf80,C11orf86,CABP2,CABP4,CARNS1,CCDC87,CCND1,CCS,CDK2AP2,CHKA,CLCF1,CORO1B,CPT1A,CTTN,DHCR7,FADD,FGF19,FGF3,FGF4,GAL,GPR152,GSTP1,IGHMBP2,KDM2A,LRFN4,LRP5,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,NADSYN1,NDUFS8,NDUFV1,NUDT8,ORAOV1,PC,PITPNM1,POLD4,PPFIA1,PPP1CA,PPP6R3,PTPRCAP,RAD9A,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RHOD,RPS6KB2,SHANK2,SPTBN2,SSH3,SUV420H1,SYT12,TBC1D10C,TBX10,TCIRG1,TMEM134,TPCN2,UNC93B1"
TCGA.AA.A01Q.01A	11	66366558	66436048	10	0.1989	NEUTRAL	NA	5	"CCS,RBM14,RBM14-RBM4,RBM4,RBM4B"
TCGA.AF.3914.01A	11	66366558	66444122	13	-0.0312	NEUTRAL	NA	5	"CCS,RBM14,RBM14-RBM4,RBM4,RBM4B"
TCGA.AG.4009.01A	11	66367903	66384145	3	-0.0896	NEUTRAL	NA	3	"CCS,RBM14,RBM14-RBM4"
TCGA.AA.A010.01A	11	66372762	66460441	23	0.2827	NEUTRAL	NA	6	"CCS,RBM14,RBM14-RBM4,RBM4,RBM4B,SPTBN2"
TCGA.AG.3906.01A	11	66372762	66478016	36	-0.1198	NEUTRAL	NA	6	"CCS,RBM14,RBM14-RBM4,RBM4,RBM4B,SPTBN2"
TCGA.AG.A020	11	66389685	70229170	767	-0.2019	NEUTRAL	NA	64	"ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANKRD13D,ANO1,C11orf24,C11orf80,C11orf86,CABP2,CABP4,CARNS1,CCND1,CDK2AP2,CHKA,CLCF1,CORO1B,CPT1A,FADD,FGF19,FGF3,FGF4,GAL,GPR152,GSTP1,IGHMBP2,KDM2A,LRFN4,LRP5,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,NDUFS8,NDUFV1,NUDT8,ORAOV1,PC,PITPNM1,POLD4,PPFIA1,PPP1CA,PPP6R3,PTPRCAP,RAD9A,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RHOD,RPS6KB2,SPTBN2,SSH3,SUV420H1,SYT12,TBC1D10C,TBX10,TCIRG1,TMEM134,TPCN2,UNC93B1"
TCGA.AA.A01Q.01A	11	66444122	66461638	15	-0.3494	NEUTRAL	NA	2	"RBM4B,SPTBN2"
TCGA.AA.A010.01A	11	66461210	66475581	12	-0.5082	NEUTRAL	NA	1	SPTBN2
TCGA.AG.3909.01A	11	66472022	67353528	152	-0.0889	NEUTRAL	NA	29	"ADRBK1,AIP,ANKRD13D,C11orf80,C11orf86,CABP2,CABP4,CARNS1,CDK2AP2,CLCF1,CORO1B,GPR152,GSTP1,KDM2A,LRFN4,PC,PITPNM1,POLD4,PPP1CA,PTPRCAP,RAD9A,RCE1,RHOD,RPS6KB2,SPTBN2,SSH3,SYT12,TBC1D10C,TMEM134"
TCGA.AA.A01Q.01A	11	66473148	67034170	49	-0.2607	NEUTRAL	NA	10	"ADRBK1,C11orf80,C11orf86,KDM2A,LRFN4,PC,RCE1,RHOD,SPTBN2,SYT12"
TCGA.AG.4009.01A	11	66476333	66589064	17	0.0724	NEUTRAL	NA	2	"C11orf80,SPTBN2"
TCGA.AA.A00L.01A	11	66483274	66631238	16	-0.4855	NEUTRAL	NA	5	"C11orf80,LRFN4,PC,RCE1,SPTBN2"
TCGA.AF.3914.01A	11	66488508	66589064	10	-0.1914	NEUTRAL	NA	2	"C11orf80,SPTBN2"
TCGA.AA.3861.01A	11	66526454	68660316	301	-0.4357	NEUTRAL	NA	46	"ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANKRD13D,C11orf24,C11orf80,C11orf86,CABP2,CABP4,CARNS1,CDK2AP2,CHKA,CLCF1,CORO1B,CPT1A,GAL,GPR152,GSTP1,KDM2A,LRFN4,LRP5,MRPL21,MTL5,NDUFS8,NDUFV1,NUDT8,PC,PITPNM1,POLD4,PPP1CA,PPP6R3,PTPRCAP,RAD9A,RCE1,RHOD,RPS6KB2,SSH3,SUV420H1,SYT12,TBC1D10C,TBX10,TCIRG1,TMEM134,UNC93B1"
TCGA.AG.A00C.01A	11	66563707	66807300	31	-0.0592	NEUTRAL	NA	6	"C11orf80,C11orf86,LRFN4,PC,RCE1,SYT12"
TCGA.AF.3914.01A	11	66589986	67413126	170	-0.4302	NEUTRAL	NA	32	"ACY3,ADRBK1,AIP,ANKRD13D,C11orf80,C11orf86,CABP2,CABP4,CARNS1,CDK2AP2,CLCF1,CORO1B,GPR152,GSTP1,KDM2A,LRFN4,NDUFV1,NUDT8,PC,PITPNM1,POLD4,PPP1CA,PTPRCAP,RAD9A,RCE1,RHOD,RPS6KB2,SSH3,SYT12,TBC1D10C,TBX10,TMEM134"
TCGA.AA.3862.01A	11	66612915	68772766	320	-0.1777	NEUTRAL	NA	48	"ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANKRD13D,C11orf24,C11orf86,CABP2,CABP4,CARNS1,CDK2AP2,CHKA,CLCF1,CORO1B,CPT1A,GAL,GPR152,GSTP1,IGHMBP2,KDM2A,LRFN4,LRP5,MRGPRD,MRGPRF,MRPL21,MTL5,NDUFS8,NDUFV1,NUDT8,PC,PITPNM1,POLD4,PPP1CA,PPP6R3,PTPRCAP,RAD9A,RCE1,RHOD,RPS6KB2,SSH3,SUV420H1,SYT12,TBC1D10C,TBX10,TCIRG1,TMEM134,UNC93B1"
TCGA.AA.A00Q.01A	11	66616330	67235444	96	-0.0234	NEUTRAL	NA	21	"ADRBK1,ANKRD13D,C11orf86,CABP4,CARNS1,CLCF1,CORO1B,GPR152,KDM2A,LRFN4,PC,POLD4,PPP1CA,PTPRCAP,RAD9A,RHOD,RPS6KB2,SSH3,SYT12,TBC1D10C,TMEM134"
TCGA.AG.4009.01A	11	66625239	67022305	38	-0.1363	NEUTRAL	NA	6	"C11orf86,KDM2A,LRFN4,PC,RHOD,SYT12"
TCGA.AA.A00N.01A	11	66633616	66974939	26	-0.0174	NEUTRAL	NA	5	"C11orf86,KDM2A,PC,RHOD,SYT12"
TCGA.AA.A00L.01A	11	66633616	67817904	155	-0.0884	NEUTRAL	NA	34	"ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANKRD13D,C11orf86,CABP2,CABP4,CARNS1,CDK2AP2,CLCF1,CORO1B,GPR152,GSTP1,KDM2A,NDUFS8,NDUFV1,NUDT8,PC,PITPNM1,POLD4,PPP1CA,PTPRCAP,RAD9A,RHOD,RPS6KB2,SSH3,SYT12,TBC1D10C,TBX10,TCIRG1,TMEM134,UNC93B1"
TCGA.AG.A00C.01A	11	66811062	67250578	81	0.1722	NEUTRAL	NA	19	"ADRBK1,AIP,ANKRD13D,CABP4,CARNS1,CLCF1,CORO1B,GPR152,KDM2A,POLD4,PPP1CA,PTPRCAP,RAD9A,RHOD,RPS6KB2,SSH3,SYT12,TBC1D10C,TMEM134"
TCGA.AA.A010.01A	11	66812027	66998990	19	-0.1968	NEUTRAL	NA	3	"KDM2A,RHOD,SYT12"
TCGA.EI.6509	11	66894299	67611218	88	-0.0914	NEUTRAL	NA	26	"ACY3,ADRBK1,AIP,ALDH3B2,ANKRD13D,CABP2,CABP4,CARNS1,CDK2AP2,CLCF1,CORO1B,GPR152,GSTP1,KDM2A,NDUFV1,NUDT8,PITPNM1,POLD4,PPP1CA,PTPRCAP,RAD9A,RPS6KB2,SSH3,TBC1D10C,TBX10,TMEM134"
TCGA.AG.A01J.01A	11	66986708	73662072	550	-0.133	NEUTRAL	NA	93	"ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANAPC15,ANKRD13D,ANO1,ARAP1,ARHGEF17,ATG16L2,C11orf24,CABP2,CABP4,CARNS1,CCND1,CDK2AP2,CHKA,CLCF1,CLPB,COA4,CORO1B,CPT1A,CTTN,DEFB108B,DHCR7,DNAJB13,FADD,FAM168A,FAM86C1,FCHSD2,FGF19,FGF3,FGF4,FOLR1,FOLR2,FOLR3,GAL,GPR152,GSTP1,IGHMBP2,IL18BP,INPPL1,KDM2A,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRP5,LRTOMT,MRGPRD,MRGPRF,MRPL21,MRPL48,MTL5,MYEOV,NADSYN1,NDUFS8,NDUFV1,NUDT8,NUMA1,ORAOV1,P2RY2,P2RY6,PAAF1,PDE2A,PHOX2A,PITPNM1,PLEKHB1,POLD4,PPFIA1,PPP1CA,PPP6R3,PTPRCAP,RAB6A,RAD9A,RELT,RNF121,RPS6KB2,SHANK2,SSH3,STARD10,SUV420H1,TBC1D10C,TBX10,TCIRG1,TMEM134,TPCN2,UNC93B1,ZNF705E"
TCGA.AG.3881	11	67038611	82332097	4491	0.0257	NEUTRAL	NA	146	Too-Many
TCGA.AA.A01Q.01A	11	67066945	67077241	12	-0.5022	NEUTRAL	NA	2	"ANKRD13D,SSH3"
TCGA.AA.A01Q.01A	11	67079021	67134914	7	-0.151	NEUTRAL	NA	3	"CLCF1,POLD4,SSH3"
TCGA.AA.A00N.01A	11	67132599	67821384	148	-0.4707	NEUTRAL	NA	26	"ACY3,AIP,ALDH3B1,ALDH3B2,CABP2,CABP4,CARNS1,CDK2AP2,CHKA,CLCF1,CORO1B,GPR152,GSTP1,NDUFS8,NDUFV1,NUDT8,PITPNM1,PPP1CA,PTPRCAP,RAD9A,RPS6KB2,TBC1D10C,TBX10,TCIRG1,TMEM134,UNC93B1"
TCGA.AA.A01Q.01A	11	67176850	67250578	26	-0.3008	NEUTRAL	NA	9	"AIP,CABP4,CARNS1,CORO1B,GPR152,PTPRCAP,RPS6KB2,TBC1D10C,TMEM134"
TCGA.AG.A015.01A	11	67209861	67289352	21	-0.4842	NEUTRAL	NA	8	"AIP,CABP2,CABP4,CDK2AP2,CORO1B,GPR152,PITPNM1,TMEM134"
TCGA.AG.3605.01A	11	67218745	134078715	86	-0.3855	NEUTRAL	NA	476	Too-Many
TCGA.AA.A01D.01A	11	67234755	113236938	2139	-0.0792	NEUTRAL	NA	286	Too-Many
TCGA.AA.A00Q.01A	11	67236442	67274784	18	0.35	NEUTRAL	NA	4	"AIP,CDK2AP2,PITPNM1,TMEM134"
TCGA.AG.A00C.01A	11	67254430	67267143	8	-0.3946	NEUTRAL	NA	2	"AIP,PITPNM1"
TCGA.AA.A01Q.01A	11	67254430	67353528	28	0.3565	NEUTRAL	NA	5	"AIP,CABP2,CDK2AP2,GSTP1,PITPNM1"
TCGA.AG.3906.01A	11	67261167	71903170	369	-0.0507	NEUTRAL	NA	56	"ACY3,ALDH3B1,ALDH3B2,ANAPC15,ANO1,C11orf24,CABP2,CCND1,CDK2AP2,CHKA,CPT1A,CTTN,DEFB108B,DHCR7,FADD,FAM86C1,FGF19,FGF3,FGF4,FOLR1,FOLR3,GAL,GSTP1,IGHMBP2,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRP5,LRTOMT,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,NADSYN1,NDUFS8,NDUFV1,NUDT8,NUMA1,ORAOV1,PITPNM1,PPFIA1,PPP6R3,RNF121,SHANK2,SUV420H1,TBX10,TCIRG1,TPCN2,UNC93B1,ZNF705E"
TCGA.AG.A00C.01A	11	67269301	68453020	114	0.0815	NEUTRAL	NA	19	"ACY3,ALDH3B1,ALDH3B2,C11orf24,CABP2,CDK2AP2,CHKA,GAL,GSTP1,LRP5,NDUFS8,NDUFV1,NUDT8,PITPNM1,PPP6R3,SUV420H1,TBX10,TCIRG1,UNC93B1"
TCGA.AG.4009.01A	11	67286522	67351888	4	0.3463	NEUTRAL	NA	2	"CABP2,GSTP1"
TCGA.AA.A00Q.01A	11	67286522	68772766	169	-0.0916	NEUTRAL	NA	23	"ACY3,ALDH3B1,ALDH3B2,C11orf24,CABP2,CHKA,CPT1A,GAL,GSTP1,IGHMBP2,LRP5,MRGPRD,MRGPRF,MRPL21,MTL5,NDUFS8,NDUFV1,NUDT8,PPP6R3,SUV420H1,TBX10,TCIRG1,UNC93B1"
TCGA.AA.A010.01A	11	67287236	67374414	11	0.2232	NEUTRAL	NA	3	"CABP2,GSTP1,NDUFV1"
TCGA.A6.3808.01A	11	67287236	68772766	197	-0.3096	NEUTRAL	NA	23	"ACY3,ALDH3B1,ALDH3B2,C11orf24,CABP2,CHKA,CPT1A,GAL,GSTP1,IGHMBP2,LRP5,MRGPRD,MRGPRF,MRPL21,MTL5,NDUFS8,NDUFV1,NUDT8,PPP6R3,SUV420H1,TBX10,TCIRG1,UNC93B1"
TCGA.AG.A015.01A	11	67351888	71723893	303	-0.0782	NEUTRAL	NA	48	"ACY3,ALDH3B1,ALDH3B2,ANO1,C11orf24,CCND1,CHKA,CPT1A,CTTN,DEFB108B,DHCR7,FADD,FAM86C1,FGF19,FGF3,FGF4,GAL,GSTP1,IGHMBP2,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LOC100129216,LRP5,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,NADSYN1,NDUFS8,NDUFV1,NUDT8,NUMA1,ORAOV1,PPFIA1,PPP6R3,RNF121,SHANK2,SUV420H1,TBX10,TCIRG1,TPCN2,UNC93B1,ZNF705E"
TCGA.AG.3909.01A	11	67379559	67803693	32	-0.43	NEUTRAL	NA	8	"ACY3,ALDH3B1,ALDH3B2,NDUFS8,NDUFV1,NUDT8,TBX10,UNC93B1"
TCGA.AA.A01Q.01A	11	67401612	67838150	41	-0.1307	NEUTRAL	NA	8	"ACY3,ALDH3B1,ALDH3B2,CHKA,NDUFS8,TBX10,TCIRG1,UNC93B1"
TCGA.AG.4009.01A	11	67410143	68380460	92	0.288	NEUTRAL	NA	11	"ACY3,ALDH3B1,ALDH3B2,C11orf24,CHKA,LRP5,NDUFS8,PPP6R3,SUV420H1,TCIRG1,UNC93B1"
TCGA.CI.6624	11	67428931	134944769	23442	0.2192	NEUTRAL	NA	470	Too-Many
TCGA.AF.3914.01A	11	67430699	71932492	361	0.026	NEUTRAL	NA	49	"ALDH3B1,ALDH3B2,ANAPC15,ANO1,C11orf24,CCND1,CHKA,CPT1A,CTTN,DEFB108B,DHCR7,FADD,FAM86C1,FGF19,FGF3,FGF4,FOLR1,FOLR2,FOLR3,GAL,IGHMBP2,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRP5,LRTOMT,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,NADSYN1,NDUFS8,NUMA1,ORAOV1,PPFIA1,PPP6R3,RNF121,SHANK2,SUV420H1,TCIRG1,TPCN2,UNC93B1,ZNF705E"
TCGA.AA.A010.01A	11	67763045	67799557	17	-0.5119	NEUTRAL	NA	3	"ALDH3B1,NDUFS8,UNC93B1"
TCGA.AA.A010.01A	11	67800338	67817904	13	0.3004	NEUTRAL	NA	2	"NDUFS8,TCIRG1"
TCGA.AG.3909.01A	11	67808712	68131163	35	0.1439	NEUTRAL	NA	5	"C11orf24,CHKA,LRP5,SUV420H1,TCIRG1"
TCGA.CK.5914.01A	11	67811561	67837609	14	-0.0892	NEUTRAL	NA	2	"CHKA,TCIRG1"
TCGA.AA.A00L.01A	11	67821384	68772766	123	0.2091	NEUTRAL	NA	12	"C11orf24,CHKA,CPT1A,GAL,IGHMBP2,LRP5,MRGPRD,MRGPRF,MRPL21,MTL5,PPP6R3,SUV420H1"
TCGA.AA.A01Q.01A	11	67842143	68031100	15	0.2997	NEUTRAL	NA	3	"C11orf24,CHKA,SUV420H1"
TCGA.AA.A00N.01A	11	67842143	68216280	40	-0.2038	NEUTRAL	NA	4	"C11orf24,CHKA,LRP5,SUV420H1"
TCGA.DC.6158	11	67854631	69572683	433	-0.2869	NEUTRAL	NA	17	"C11orf24,CCND1,CHKA,CPT1A,FGF19,GAL,IGHMBP2,LRP5,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,ORAOV1,PPP6R3,SUV420H1,TPCN2"
TCGA.D5.6898	11	68014749	68303628	39	0.1415	NEUTRAL	NA	3	"C11orf24,LRP5,PPP6R3"
TCGA.CK.5914.01A	11	68029106	68216280	25	-0.3335	NEUTRAL	NA	2	"C11orf24,LRP5"
TCGA.AA.A010.01A	11	68029106	68318533	29	0.1289	NEUTRAL	NA	3	"C11orf24,LRP5,PPP6R3"
TCGA.AG.3909.01A	11	68133041	68216280	18	-0.4767	NEUTRAL	NA	1	LRP5
TCGA.AA.A01Q.01A	11	68213853	68452345	24	0.0833	NEUTRAL	NA	3	"GAL,LRP5,PPP6R3"
TCGA.AG.3909.01A	11	68305086	68369279	17	0.3675	NEUTRAL	NA	1	PPP6R3
TCGA.CK.5914.01A	11	68305086	68452345	25	0.0471	NEUTRAL	NA	2	"GAL,PPP6R3"
TCGA.AG.4009.01A	11	68453020	68540693	19	-0.2466	NEUTRAL	NA	3	"CPT1A,GAL,MTL5"
TCGA.AA.A010.01A	11	68453020	69062785	78	0.121	NEUTRAL	NA	9	"CPT1A,GAL,IGHMBP2,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,TPCN2"
TCGA.AG.3909.01A	11	68453020	69465837	81	-0.4478	NEUTRAL	NA	10	"CCND1,CPT1A,GAL,IGHMBP2,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,TPCN2"
TCGA.AG.A00C.01A	11	68525058	69462735	62	0.1336	NEUTRAL	NA	8	"CCND1,CPT1A,IGHMBP2,MRGPRD,MRGPRF,MRPL21,MYEOV,TPCN2"
TCGA.AA.A00N.01A	11	68527646	69465837	67	-0.4204	NEUTRAL	NA	8	"CCND1,CPT1A,IGHMBP2,MRGPRD,MRGPRF,MRPL21,MYEOV,TPCN2"
TCGA.AA.3861.01A	11	68660796	68772766	21	0.2573	NEUTRAL	NA	4	"IGHMBP2,MRGPRD,MRGPRF,MRPL21"
TCGA.AG.4009.01A	11	68747483	68855285	23	0.1942	NEUTRAL	NA	3	"MRGPRD,MRGPRF,TPCN2"
TCGA.AA.A00Q.01A	11	68777247	69489881	33	-0.4298	NEUTRAL	NA	5	"CCND1,MRGPRF,MYEOV,ORAOV1,TPCN2"
TCGA.A6.2681	11	68827625	68947692	60	-0.4549	NEUTRAL	NA	1	TPCN2
TCGA.AA.A00L.01A	11	68830302	71906268	169	0.1655	NEUTRAL	NA	31	"ANAPC15,ANO1,CCND1,CTTN,DEFB108B,DHCR7,FADD,FAM86C1,FGF19,FGF3,FGF4,FOLR1,FOLR3,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRTOMT,MYEOV,NADSYN1,NUMA1,ORAOV1,PPFIA1,RNF121,SHANK2,TPCN2,ZNF705E"
TCGA.AA.3862.01A	11	68855285	75905564	657	-0.1011	NEUTRAL	NA	78	"ANAPC15,ANO1,ARAP1,ARHGEF17,ARRB1,ATG16L2,C2CD3,CCND1,CHRDL2,CLPB,COA4,CTTN,DEFB108B,DGAT2,DHCR7,DNAJB13,FADD,FAM168A,FAM86C1,FCHSD2,FGF19,FGF3,FGF4,FOLR1,FOLR2,FOLR3,GDPD5,IL18BP,INPPL1,KCNE3,KLHL35,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LIPT2,LOC100129216,LRTOMT,MAP6,MOGAT2,MRPL48,MYEOV,NADSYN1,NEU3,NUMA1,OR2AT4,ORAOV1,P2RY2,P2RY6,P4HA3,PAAF1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPFIA1,PPME1,RAB6A,RELT,RNF121,RNF169,RPS3,SERPINH1,SHANK2,SLCO2B1,SPCS2,STARD10,TPBGL,TPCN2,UCP2,UCP3,UVRAG,WNT11,XRRA1,ZNF705E"
TCGA.AA.3860	11	68897274	73080404	1092	0.0304	NEUTRAL	NA	42	"ANAPC15,ANO1,ARAP1,ARHGEF17,ATG16L2,CCND1,CLPB,CTTN,DEFB108B,DHCR7,FADD,FAM86C1,FCHSD2,FGF19,FGF3,FGF4,FOLR1,FOLR2,FOLR3,IL18BP,INPPL1,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRTOMT,MYEOV,NADSYN1,NUMA1,ORAOV1,P2RY2,P2RY6,PDE2A,PHOX2A,PPFIA1,RNF121,SHANK2,STARD10,ZNF705E"
TCGA.AY.A71X	11	68926521	110671663	13616	-0.4022	NEUTRAL	NA	230	Too-Many
TCGA.A6.2681	11	68957019	70895312	584	0.032	NEUTRAL	NA	11	"ANO1,CCND1,CTTN,FADD,FGF19,FGF3,FGF4,MYEOV,ORAOV1,PPFIA1,SHANK2"
TCGA.AA.3861.01A	11	69458553	70031659	38	-0.4505	NEUTRAL	NA	6	"ANO1,CCND1,FGF19,FGF3,FGF4,ORAOV1"
TCGA.AA.A00N.01A	11	69489881	71548396	147	-0.4042	NEUTRAL	NA	19	"ANO1,CTTN,DEFB108B,DHCR7,FADD,FAM86C1,FGF19,FGF3,FGF4,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,NADSYN1,ORAOV1,PPFIA1,SHANK2,ZNF705E"
TCGA.AG.3909.01A	11	69514023	69995761	15	0.2964	NEUTRAL	NA	4	"ANO1,FGF19,FGF3,FGF4"
TCGA.AA.A00Q.01A	11	69514023	70268977	40	0.1635	NEUTRAL	NA	7	"ANO1,CTTN,FADD,FGF19,FGF3,FGF4,PPFIA1"
TCGA.DC.6158	11	69629198	69661333	13	-0.3576	NEUTRAL	NA	1	FGF3
TCGA.AA.A01Q.01A	11	69633501	70253349	30	-0.0174	NEUTRAL	NA	5	"ANO1,CTTN,FADD,FGF3,PPFIA1"
TCGA.DC.6158	11	69806082	70140425	117	-0.3288	NEUTRAL	NA	3	"ANO1,FADD,PPFIA1"
TCGA.AG.A00C.01A	11	69933809	76834687	629	0.0128	NEUTRAL	NA	80	"ACER3,ANAPC15,ANO1,ARAP1,ARHGEF17,ARRB1,ATG16L2,B3GNT6,C11orf30,C2CD3,CAPN5,CHRDL2,CLPB,COA4,CTTN,DEFB108B,DGAT2,DHCR7,DNAJB13,FADD,FAM168A,FAM86C1,FCHSD2,FOLR1,FOLR2,FOLR3,GDPD5,IL18BP,INPPL1,KCNE3,KLHL35,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LIPT2,LOC100129216,LOC100506127,LRRC32,LRTOMT,MAP6,MOGAT2,MRPL48,NADSYN1,NEU3,NUMA1,OMP,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPFIA1,PPME1,PRKRIR,RAB6A,RELT,RNF121,RNF169,RPS3,SERPINH1,SHANK2,SLCO2B1,SPCS2,STARD10,TPBGL,TSKU,UCP2,UCP3,UVRAG,WNT11,XRRA1,ZNF705E"
TCGA.AA.A010.01A	11	69970388	71548396	129	0.1786	NEUTRAL	NA	15	"ANO1,CTTN,DEFB108B,DHCR7,FADD,FAM86C1,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,NADSYN1,PPFIA1,SHANK2,ZNF705E"
TCGA.AG.3909.01A	11	69998460	70281092	55	-0.3322	NEUTRAL	NA	4	"ANO1,CTTN,FADD,PPFIA1"
TCGA.AG.4009.01A	11	70002992	70049565	10	0.3383	NEUTRAL	NA	2	"ANO1,FADD"
TCGA.A6.3807	11	70096584	78612720	2101	0.3779	NEUTRAL	NA	96	"AAMDC,ACER3,ALG8,ANAPC15,AQP11,ARAP1,ARHGEF17,ARRB1,ATG16L2,B3GNT6,C11orf30,C2CD3,CAPN5,CHRDL2,CLNS1A,CLPB,COA4,CTTN,DEFB108B,DGAT2,DHCR7,DNAJB13,FAM168A,FAM86C1,FCHSD2,FOLR1,FOLR2,FOLR3,GAB2,GDPD4,GDPD5,IL18BP,INPPL1,INTS4,KCNE3,KCTD14,KCTD21,KLHL35,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LIPT2,LOC100129216,LOC100506127,LRRC32,LRTOMT,MAP6,MOGAT2,MRPL48,MYO7A,NADSYN1,NARS2,NDUFC2,NDUFC2-KCTD14,NEU3,NUMA1,OMP,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PAK1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPFIA1,PPME1,PRKRIR,RAB6A,RELT,RNF121,RNF169,RPS3,RSF1,SERPINH1,SHANK2,SLCO2B1,SPCS2,STARD10,TENM4,THRSP,TPBGL,TSKU,UCP2,UCP3,USP35,UVRAG,WNT11,XRRA1,ZNF705E"
TCGA.AA.3930.01A	11	70268977	71728691	100	0.0322	NEUTRAL	NA	16	"CTTN,DEFB108B,DHCR7,FAM86C1,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LOC100129216,NADSYN1,NUMA1,RNF121,SHANK2,ZNF705E"
TCGA.AA.A00Q.01A	11	70271375	71822165	97	-0.2431	NEUTRAL	NA	19	"ANAPC15,CTTN,DEFB108B,DHCR7,FAM86C1,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRTOMT,NADSYN1,NUMA1,RNF121,SHANK2,ZNF705E"
TCGA.DC.6158	11	70307799	70795264	152	-0.2836	NEUTRAL	NA	1	SHANK2
TCGA.A6.3808.01A	11	70348250	71212277	46	0.2429	NEUTRAL	NA	3	"DHCR7,NADSYN1,SHANK2"
TCGA.CK.4951	11	70542983	134944769	22650	-0.0006	NEUTRAL	NA	442	Too-Many
TCGA.DC.6158	11	70881880	71209952	164	-0.2525	NEUTRAL	NA	3	"DHCR7,NADSYN1,SHANK2"
TCGA.DM.A1D8	11	70881880	134944769	22628	0.2781	NEUTRAL	NA	442	Too-Many
TCGA.A6.2681	11	70915330	77666486	1595	0.0302	NEUTRAL	NA	84	"AAMDC,ACER3,ANAPC15,AQP11,ARAP1,ARHGEF17,ARRB1,ATG16L2,B3GNT6,C11orf30,C2CD3,CAPN5,CHRDL2,CLNS1A,CLPB,COA4,DEFB108B,DGAT2,DHCR7,DNAJB13,FAM168A,FAM86C1,FCHSD2,FOLR1,FOLR2,FOLR3,GDPD4,GDPD5,IL18BP,INPPL1,INTS4,KCNE3,KLHL35,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LIPT2,LOC100129216,LOC100506127,LRRC32,LRTOMT,MAP6,MOGAT2,MRPL48,MYO7A,NADSYN1,NEU3,NUMA1,OMP,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PAK1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPME1,PRKRIR,RAB6A,RELT,RNF121,RNF169,RPS3,RSF1,SERPINH1,SHANK2,SLCO2B1,SPCS2,STARD10,TPBGL,TSKU,UCP2,UCP3,UVRAG,WNT11,XRRA1,ZNF705E"
TCGA.AA.3667	11	70927424	71543707	188	0.1432	NEUTRAL	NA	10	"DHCR7,FAM86C1,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,NADSYN1,SHANK2,ZNF705E"
TCGA.D5.6898	11	71053384	74465575	741	0.1479	NEUTRAL	NA	50	"ANAPC15,ARAP1,ARHGEF17,ATG16L2,C2CD3,CHRDL2,CLPB,COA4,DEFB108B,DHCR7,DNAJB13,FAM168A,FAM86C1,FCHSD2,FOLR1,FOLR2,FOLR3,IL18BP,INPPL1,KCNE3,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LIPT2,LOC100129216,LRTOMT,MRPL48,NADSYN1,NUMA1,P2RY2,P2RY6,P4HA3,PAAF1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPME1,RAB6A,RELT,RNF121,RNF169,STARD10,UCP2,UCP3,ZNF705E"
TCGA.DT.5265	11	71109915	71845540	170	0.056	NEUTRAL	NA	17	"ANAPC15,DEFB108B,DHCR7,FAM86C1,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRTOMT,NADSYN1,NUMA1,RNF121,ZNF705E"
TCGA.CK.5914.01A	11	71212277	71822165	69	-0.0471	NEUTRAL	NA	16	"ANAPC15,DEFB108B,FAM86C1,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRTOMT,NADSYN1,NUMA1,RNF121,ZNF705E"
TCGA.AA.A01Q.01A	11	71212277	71940087	67	0.1893	NEUTRAL	NA	20	"ANAPC15,DEFB108B,FAM86C1,FOLR1,FOLR2,FOLR3,IL18BP,INPPL1,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRTOMT,NADSYN1,NUMA1,RNF121,ZNF705E"
TCGA.AG.A01L.01A	11	71238326	71510573	13	-0.3793	NEUTRAL	NA	6	"FAM86C1,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9"
TCGA.DC.6158	11	71291489	73198493	311	-0.3051	NEUTRAL	NA	27	"ANAPC15,ARAP1,ARHGEF17,ATG16L2,CLPB,DEFB108B,FAM168A,FAM86C1,FCHSD2,FOLR1,FOLR2,FOLR3,IL18BP,INPPL1,KRTAP5-11,LAMTOR1,LOC100129216,LRTOMT,NUMA1,P2RY2,P2RY6,PDE2A,PHOX2A,RELT,RNF121,STARD10,ZNF705E"
TCGA.AM.5820	11	71360189	72282923	158	-0.0682	NEUTRAL	NA	16	"ANAPC15,CLPB,DEFB108B,FAM86C1,FOLR1,FOLR2,FOLR3,IL18BP,INPPL1,LAMTOR1,LOC100129216,LRTOMT,NUMA1,PHOX2A,RNF121,ZNF705E"
TCGA.AG.A01W.01A	11	71412927	71580819	25	-0.3827	NEUTRAL	NA	3	"DEFB108B,FAM86C1,ZNF705E"
TCGA.A6.5661	11	71523317	72872387	222	0.2378	NEUTRAL	NA	20	"ANAPC15,ARAP1,ATG16L2,CLPB,DEFB108B,FCHSD2,FOLR1,FOLR2,FOLR3,IL18BP,INPPL1,LAMTOR1,LOC100129216,LRTOMT,NUMA1,PDE2A,PHOX2A,RNF121,STARD10,ZNF705E"
TCGA.AG.A01L.01A	11	71544182	71714891	16	0.0363	NEUTRAL	NA	5	"DEFB108B,IL18BP,LOC100129216,NUMA1,RNF121"
TCGA.AA.3667	11	71550002	71600785	11	-0.4814	NEUTRAL	NA	1	LOC100129216
TCGA.AG.3727	11	71574400	105846386	11406	-0.0007	NEUTRAL	NA	186	Too-Many
TCGA.AA.3850	11	71626088	78833534	1829	0.27385	NEUTRAL	NA	82	"AAMDC,ACER3,ALG8,ANAPC15,AQP11,ARAP1,ARHGEF17,ARRB1,ATG16L2,B3GNT6,C11orf30,C2CD3,CAPN5,CHRDL2,CLNS1A,CLPB,COA4,DGAT2,DNAJB13,FAM168A,FCHSD2,FOLR1,FOLR2,FOLR3,GAB2,GDPD4,GDPD5,IL18BP,INPPL1,INTS4,KCNE3,KCTD14,KCTD21,KLHL35,LAMTOR1,LIPT2,LOC100506127,LRRC32,LRTOMT,MAP6,MOGAT2,MRPL48,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,NEU3,NUMA1,OMP,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PAK1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPME1,PRKRIR,RAB6A,RELT,RNF121,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,STARD10,TENM4,THRSP,TPBGL,TSKU,UCP2,UCP3,USP35,UVRAG,WNT11,XRRA1"
TCGA.AA.3667	11	71626088	134944769	22445	0.0119	NEUTRAL	NA	430	Too-Many
TCGA.AG.A01W.01A	11	71628393	71977803	36	-0.0265	NEUTRAL	NA	11	"ANAPC15,FOLR1,FOLR2,FOLR3,IL18BP,INPPL1,LAMTOR1,LRTOMT,NUMA1,PHOX2A,RNF121"
TCGA.AA.3861.01A	11	71640059	75905564	498	-0.2609	NEUTRAL	NA	55	"ANAPC15,ARAP1,ARHGEF17,ARRB1,ATG16L2,C2CD3,CHRDL2,CLPB,COA4,DGAT2,DNAJB13,FAM168A,FCHSD2,FOLR1,FOLR2,FOLR3,GDPD5,IL18BP,INPPL1,KCNE3,KLHL35,LAMTOR1,LIPT2,LRTOMT,MAP6,MOGAT2,MRPL48,NEU3,NUMA1,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPME1,RAB6A,RELT,RNF121,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,STARD10,TPBGL,UCP2,UCP3,UVRAG,WNT11,XRRA1"
TCGA.AG.3909.01A	11	71668191	71746868	34	0.3508	NEUTRAL	NA	3	"IL18BP,NUMA1,RNF121"
TCGA.A6.3808.01A	11	71693766	72018173	84	-0.1164	NEUTRAL	NA	12	"ANAPC15,CLPB,FOLR1,FOLR2,FOLR3,IL18BP,INPPL1,LAMTOR1,LRTOMT,NUMA1,PHOX2A,RNF121"
TCGA.AA.A00O.01A	11	71707219	118959739	2489	0.0497	NEUTRAL	NA	303	Too-Many
TCGA.AG.A01L.01A	11	71715635	71939167	40	-0.4002	NEUTRAL	NA	8	"ANAPC15,FOLR1,FOLR2,FOLR3,INPPL1,LAMTOR1,LRTOMT,NUMA1"
TCGA.AA.A00N.01A	11	71719682	71822165	33	-0.4449	NEUTRAL	NA	4	"ANAPC15,LAMTOR1,LRTOMT,NUMA1"
TCGA.AG.A015.01A	11	71727402	71929590	28	-0.4887	NEUTRAL	NA	7	"ANAPC15,FOLR1,FOLR2,FOLR3,LAMTOR1,LRTOMT,NUMA1"
TCGA.AA.3930.01A	11	71746868	71932492	27	0.2869	NEUTRAL	NA	7	"ANAPC15,FOLR1,FOLR2,FOLR3,LAMTOR1,LRTOMT,NUMA1"
TCGA.AG.3909.01A	11	71800074	71822165	11	-0.3964	NEUTRAL	NA	3	"ANAPC15,LAMTOR1,LRTOMT"
TCGA.A6.5656	11	71836277	134944769	22280	-0.0171	NEUTRAL	NA	424	Too-Many
TCGA.AA.A00Q.01A	11	71849988	71948166	21	0.0399	NEUTRAL	NA	4	"FOLR1,FOLR2,FOLR3,INPPL1"
TCGA.DT.5265	11	71867166	71995638	12	0.0862	NEUTRAL	NA	4	"FOLR1,FOLR2,INPPL1,PHOX2A"
TCGA.AA.A010.01A	11	71903170	71906268	2	-0.4254	NEUTRAL	NA	1	FOLR1
TCGA.CK.5914.01A	11	71929590	71939760	5	-0.1544	NEUTRAL	NA	2	"FOLR2,INPPL1"
TCGA.AG.3909.01A	11	71929590	71952097	18	-0.3157	NEUTRAL	NA	3	"FOLR2,INPPL1,PHOX2A"
TCGA.AA.A00L.01A	11	71929590	72005019	21	-0.4553	NEUTRAL	NA	4	"CLPB,FOLR2,INPPL1,PHOX2A"
TCGA.AG.A015.01A	11	71931872	71939760	4	0.0615	NEUTRAL	NA	2	"FOLR2,INPPL1"
TCGA.AA.3930.01A	11	71939167	71954822	18	-0.4817	NEUTRAL	NA	2	"INPPL1,PHOX2A"
TCGA.AG.3891.01A	11	71946115	72292857	29	-0.0121	NEUTRAL	NA	4	"CLPB,INPPL1,PDE2A,PHOX2A"
TCGA.AA.A01Q.01A	11	71946661	72319649	46	0.0636	NEUTRAL	NA	4	"CLPB,INPPL1,PDE2A,PHOX2A"
TCGA.AA.A01K.01A	11	71948166	75907508	356	-0.1736	NEUTRAL	NA	46	"ARAP1,ARHGEF17,ARRB1,ATG16L2,C2CD3,CHRDL2,CLPB,COA4,DGAT2,DNAJB13,FAM168A,FCHSD2,GDPD5,INPPL1,KCNE3,KLHL35,LIPT2,MAP6,MOGAT2,MRPL48,NEU3,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPME1,RAB6A,RELT,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,STARD10,TPBGL,UCP2,UCP3,UVRAG,WNT11,XRRA1"
TCGA.AA.A00Q.01A	11	71949066	73019656	104	-0.3905	NEUTRAL	NA	10	"ARAP1,ATG16L2,CLPB,FCHSD2,INPPL1,P2RY2,P2RY6,PDE2A,PHOX2A,STARD10"
TCGA.AA.A00D.01A	11	71952097	72145094	18	-0.4202	NEUTRAL	NA	2	"CLPB,PHOX2A"
TCGA.AG.A015.01A	11	71952097	72300165	32	-0.2373	NEUTRAL	NA	3	"CLPB,PDE2A,PHOX2A"
TCGA.AG.3906.01A	11	71952097	73022432	107	-0.022	NEUTRAL	NA	10	"ARAP1,ARHGEF17,ATG16L2,CLPB,FCHSD2,P2RY2,P2RY6,PDE2A,PHOX2A,STARD10"
TCGA.DT.5265	11	71998324	72320974	73	-0.5139	NEUTRAL	NA	2	"CLPB,PDE2A"
TCGA.AA.A00F.01A	11	72004363	72145094	17	-0.0605	NEUTRAL	NA	1	CLPB
TCGA.AF.3914.01A	11	72004363	72288400	18	0.2474	NEUTRAL	NA	2	"CLPB,PDE2A"
TCGA.AA.3930.01A	11	72004363	85584199	821	0.0872	NEUTRAL	NA	85	"AAMDC,ACER3,ALG8,ANKRD42,AQP11,ARAP1,ARHGEF17,ARRB1,ATG16L2,B3GNT6,C11orf30,C2CD3,CAPN5,CCDC83,CCDC89,CCDC90B,CHRDL2,CLNS1A,CLPB,COA4,CREBZF,DDIAS,DGAT2,DLG2,DNAJB13,FAM168A,FAM181B,FCHSD2,GAB2,GDPD4,GDPD5,INTS4,KCNE3,KCTD14,KCTD21,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MRPL48,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,NEU3,OMP,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PAK1,PCF11,PDE2A,PGM2L1,PLEKHB1,POLD3,PPME1,PRCP,PRKRIR,RAB30,RAB6A,RELT,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,STARD10,SYTL2,TENM4,THRSP,TMEM126A,TMEM126B,TPBGL,TSKU,UCP2,UCP3,USP35,UVRAG,WNT11,XRRA1"
TCGA.AG.A01L.01A	11	72004363	93470183	984	-0.1115	NEUTRAL	NA	116	Too-Many
TCGA.AA.A00L.01A	11	72005317	77475612	457	0.0093	NEUTRAL	NA	59	"ACER3,AQP11,ARAP1,ARHGEF17,ARRB1,ATG16L2,B3GNT6,C11orf30,C2CD3,CAPN5,CHRDL2,CLNS1A,CLPB,COA4,DGAT2,DNAJB13,FAM168A,FCHSD2,GDPD4,GDPD5,KCNE3,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MRPL48,MYO7A,NEU3,OMP,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PAK1,PDE2A,PGM2L1,PLEKHB1,POLD3,PPME1,PRKRIR,RAB6A,RELT,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,STARD10,TPBGL,TSKU,UCP2,UCP3,UVRAG,WNT11,XRRA1"
TCGA.AG.A01W.01A	11	72169620	72784060	64	0.1867	NEUTRAL	NA	5	"ARAP1,ATG16L2,FCHSD2,PDE2A,STARD10"
TCGA.AA.A010.01A	11	72287632	72326043	25	-0.064	NEUTRAL	NA	1	PDE2A
TCGA.AG.3909.01A	11	72288400	72397070	24	0.0797	NEUTRAL	NA	2	"ARAP1,PDE2A"
TCGA.AA.A00D.01A	11	72288400	73712417	143	0.0405	NEUTRAL	NA	18	"ARAP1,ARHGEF17,ATG16L2,COA4,DNAJB13,FAM168A,FCHSD2,MRPL48,P2RY2,P2RY6,PAAF1,PDE2A,PLEKHB1,RAB6A,RELT,STARD10,UCP2,UCP3"
TCGA.AA.A00F.01A	11	72288400	74013376	192	0.254	NEUTRAL	NA	21	"ARAP1,ARHGEF17,ATG16L2,C2CD3,COA4,DNAJB13,FAM168A,FCHSD2,MRPL48,P2RY2,P2RY6,P4HA3,PAAF1,PDE2A,PLEKHB1,PPME1,RAB6A,RELT,STARD10,UCP2,UCP3"
TCGA.CK.5914.01A	11	72289229	72302284	18	-0.3632	NEUTRAL	NA	1	PDE2A
TCGA.AG.3891.01A	11	72293446	72396650	17	-0.3816	NEUTRAL	NA	2	"ARAP1,PDE2A"
TCGA.AF.3914.01A	11	72300165	73008134	76	0.0039	NEUTRAL	NA	7	"ARAP1,ATG16L2,FCHSD2,P2RY2,P2RY6,PDE2A,STARD10"
TCGA.AA.A00N.01A	11	72307568	72397070	11	0.1634	NEUTRAL	NA	2	"ARAP1,PDE2A"
TCGA.AG.4009.01A	11	72308517	72326043	3	0.3157	NEUTRAL	NA	1	PDE2A
TCGA.DT.5265	11	72322178	75904136	798	0.0448	NEUTRAL	NA	43	"ARAP1,ARHGEF17,ARRB1,ATG16L2,C2CD3,CHRDL2,COA4,DGAT2,DNAJB13,FAM168A,FCHSD2,GDPD5,KCNE3,KLHL35,LIPT2,MAP6,MOGAT2,MRPL48,NEU3,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PDE2A,PGM2L1,PLEKHB1,POLD3,PPME1,RAB6A,RELT,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,STARD10,TPBGL,UCP2,UCP3,UVRAG,WNT11,XRRA1"
TCGA.CK.5914.01A	11	72379262	72535035	42	-0.4711	NEUTRAL	NA	4	"ARAP1,ATG16L2,PDE2A,STARD10"
TCGA.AA.A010.01A	11	72385115	72465930	30	0.2563	NEUTRAL	NA	3	"ARAP1,PDE2A,STARD10"
TCGA.AG.A015.01A	11	72396650	74421842	232	-0.1371	NEUTRAL	NA	25	"ARAP1,ARHGEF17,ATG16L2,C2CD3,CHRDL2,COA4,DNAJB13,FAM168A,FCHSD2,KCNE3,LIPT2,MRPL48,P2RY2,P2RY6,P4HA3,PAAF1,PGM2L1,PLEKHB1,POLD3,PPME1,RAB6A,RELT,STARD10,UCP2,UCP3"
TCGA.AG.3891.01A	11	72397070	72527731	33	0.2313	NEUTRAL	NA	3	"ARAP1,ATG16L2,STARD10"
TCGA.AA.A00N.01A	11	72398418	72560772	53	-0.4433	NEUTRAL	NA	4	"ARAP1,ATG16L2,FCHSD2,STARD10"
TCGA.AG.3909.01A	11	72398418	73118527	91	-0.2441	NEUTRAL	NA	9	"ARAP1,ARHGEF17,ATG16L2,FAM168A,FCHSD2,P2RY2,P2RY6,RELT,STARD10"
TCGA.AA.A01Q.01A	11	72425178	72945193	35	0.058	NEUTRAL	NA	5	"ARAP1,ATG16L2,FCHSD2,P2RY2,STARD10"
TCGA.AG.4009.01A	11	72425178	73021987	39	0.1304	NEUTRAL	NA	7	"ARAP1,ARHGEF17,ATG16L2,FCHSD2,P2RY2,P2RY6,STARD10"
TCGA.AM.5820	11	72464524	72528972	8	0.1226	NEUTRAL	NA	2	"ATG16L2,STARD10"
TCGA.AA.A010.01A	11	72525449	72578863	21	-0.2717	NEUTRAL	NA	2	"ATG16L2,FCHSD2"
TCGA.AG.3891.01A	11	72528752	72536298	6	-0.2836	NEUTRAL	NA	1	ATG16L2
TCGA.CK.5914.01A	11	72535738	72598473	16	0.1248	NEUTRAL	NA	2	"ATG16L2,FCHSD2"
TCGA.AG.3891.01A	11	72537182	73022432	28	0.1576	NEUTRAL	NA	5	"ARHGEF17,ATG16L2,FCHSD2,P2RY2,P2RY6"
TCGA.AM.5820	11	72551034	72861887	23	-0.3439	NEUTRAL	NA	1	FCHSD2
TCGA.AA.A00N.01A	11	72578863	72794666	12	0.2176	NEUTRAL	NA	1	FCHSD2
TCGA.AA.A010.01A	11	72726794	73022432	12	-0.1648	NEUTRAL	NA	4	"ARHGEF17,FCHSD2,P2RY2,P2RY6"
TCGA.AG.A01W.01A	11	72796176	73394846	60	-0.2092	NEUTRAL	NA	8	"ARHGEF17,FAM168A,FCHSD2,P2RY2,P2RY6,PLEKHB1,RAB6A,RELT"
TCGA.AM.5820	11	72865827	73124440	67	0.35	NEUTRAL	NA	5	"ARHGEF17,FAM168A,P2RY2,P2RY6,RELT"
TCGA.A6.5661	11	72880398	80292459	2301	-0.2579	NEUTRAL	NA	65	"AAMDC,ACER3,ALG8,AQP11,ARHGEF17,ARRB1,B3GNT6,C11orf30,C2CD3,CAPN5,CHRDL2,CLNS1A,COA4,DGAT2,DNAJB13,FAM168A,GAB2,GDPD4,GDPD5,INTS4,KCNE3,KCTD14,KCTD21,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MRPL48,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,NEU3,OMP,OR2AT4,P2RY2,P2RY6,P4HA3,PAAF1,PAK1,PGM2L1,PLEKHB1,POLD3,PPME1,PRKRIR,RAB6A,RELT,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,TENM4,THRSP,TPBGL,TSKU,UCP2,UCP3,USP35,UVRAG,WNT11,XRRA1"
TCGA.AA.A01Q.01A	11	72946688	73022432	6	-0.5084	NEUTRAL	NA	3	"ARHGEF17,P2RY2,P2RY6"
TCGA.AG.A02X.01A	11	73019656	73680241	70	-0.2633	NEUTRAL	NA	9	"ARHGEF17,COA4,DNAJB13,FAM168A,MRPL48,PAAF1,PLEKHB1,RAB6A,RELT"
TCGA.AA.A00Q.01A	11	73021987	85342693	475	-0.0391	NEUTRAL	NA	72	"AAMDC,ACER3,ALG8,ANKRD42,AQP11,ARHGEF17,ARRB1,B3GNT6,C11orf30,C2CD3,CAPN5,CCDC90B,CHRDL2,CLNS1A,COA4,DDIAS,DGAT2,DLG2,DNAJB13,FAM168A,FAM181B,GAB2,GDPD4,GDPD5,INTS4,KCNE3,KCTD14,KCTD21,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MRPL48,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,NEU3,OMP,OR2AT4,P4HA3,PAAF1,PAK1,PCF11,PGM2L1,PLEKHB1,POLD3,PPME1,PRCP,PRKRIR,RAB30,RAB6A,RELT,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,TENM4,THRSP,TMEM126B,TPBGL,TSKU,UCP2,UCP3,USP35,UVRAG,WNT11,XRRA1"
TCGA.AG.3891.01A	11	73073037	73076746	8	0.3139	NEUTRAL	NA	1	ARHGEF17
TCGA.AF.3914.01A	11	73076394	73602103	43	0.1578	NEUTRAL	NA	8	"ARHGEF17,COA4,FAM168A,MRPL48,PAAF1,PLEKHB1,RAB6A,RELT"
TCGA.AG.3891.01A	11	73078598	73179387	14	-0.0612	NEUTRAL	NA	3	"ARHGEF17,FAM168A,RELT"
TCGA.AA.A010.01A	11	73100113	73179387	14	-0.1206	NEUTRAL	NA	2	"FAM168A,RELT"
TCGA.AG.3906.01A	11	73101562	73371747	18	-0.2165	NEUTRAL	NA	3	"FAM168A,PLEKHB1,RELT"
TCGA.AG.4009.01A	11	73101562	73589748	35	0.3471	NEUTRAL	NA	7	"COA4,FAM168A,MRPL48,PAAF1,PLEKHB1,RAB6A,RELT"
TCGA.CK.5914.01A	11	73103207	73106140	5	-0.1601	NEUTRAL	NA	1	RELT
TCGA.AG.3909.01A	11	73120569	73589748	30	0.3358	NEUTRAL	NA	6	"COA4,FAM168A,MRPL48,PAAF1,PLEKHB1,RAB6A"
TCGA.AM.5820	11	73125247	73351284	36	-0.1832	NEUTRAL	NA	1	FAM168A
TCGA.DC.6158	11	73245157	73541424	56	-0.3909	NEUTRAL	NA	4	"FAM168A,MRPL48,PLEKHB1,RAB6A"
TCGA.CK.5914.01A	11	73357562	73587989	26	0.0848	NEUTRAL	NA	5	"COA4,MRPL48,PAAF1,PLEKHB1,RAB6A"
TCGA.AG.3891.01A	11	73359998	73714857	50	0.2917	NEUTRAL	NA	8	"COA4,DNAJB13,MRPL48,PAAF1,PLEKHB1,RAB6A,UCP2,UCP3"
TCGA.AA.A01Q.01A	11	73359998	74911237	142	0.1636	NEUTRAL	NA	22	"C2CD3,CHRDL2,COA4,DNAJB13,KCNE3,LIPT2,MRPL48,NEU3,OR2AT4,P4HA3,PAAF1,PGM2L1,PLEKHB1,POLD3,PPME1,RAB6A,RNF169,SLCO2B1,SPCS2,UCP2,UCP3,XRRA1"
TCGA.AG.3906.01A	11	73372459	73584150	17	0.112	NEUTRAL	NA	4	"COA4,MRPL48,PLEKHB1,RAB6A"
TCGA.AM.5820	11	73377349	73632693	49	-0.409	NEUTRAL	NA	4	"COA4,MRPL48,PAAF1,RAB6A"
TCGA.AA.A00N.01A	11	73388875	73536711	12	-0.2504	NEUTRAL	NA	2	"MRPL48,RAB6A"
TCGA.AG.A01W.01A	11	73395559	74029218	89	0.1074	NEUTRAL	NA	10	"C2CD3,COA4,DNAJB13,MRPL48,P4HA3,PAAF1,PPME1,RAB6A,UCP2,UCP3"
TCGA.AA.3860	11	73417671	82435413	3079	0.0121	NEUTRAL	NA	59	"AAMDC,ACER3,ALG8,AQP11,ARRB1,B3GNT6,C11orf30,C2CD3,CAPN5,CHRDL2,CLNS1A,COA4,DGAT2,DNAJB13,GAB2,GDPD4,GDPD5,INTS4,KCNE3,KCTD14,KCTD21,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MRPL48,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,NEU3,OMP,OR2AT4,P4HA3,PAAF1,PAK1,PGM2L1,POLD3,PPME1,PRKRIR,RAB6A,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,TENM4,THRSP,TPBGL,TSKU,UCP2,UCP3,USP35,UVRAG,WNT11,XRRA1"
TCGA.AA.A010.01A	11	73589748	73611268	5	-0.363	NEUTRAL	NA	1	PAAF1
TCGA.AA.A00N.01A	11	73620427	73712417	20	-0.4597	NEUTRAL	NA	4	"DNAJB13,PAAF1,UCP2,UCP3"
TCGA.CK.5914.01A	11	73620427	73712417	20	-0.4405	NEUTRAL	NA	4	"DNAJB13,PAAF1,UCP2,UCP3"
TCGA.AF.3914.01A	11	73620427	74013376	82	-0.0261	NEUTRAL	NA	7	"C2CD3,DNAJB13,P4HA3,PAAF1,PPME1,UCP2,UCP3"
TCGA.AA.A02H.01A	11	73620427	102576293	1083	0.1121	NEUTRAL	NA	141	Too-Many
TCGA.AA.A02E.01A	11	73620427	111715274	1608	-0.1261	NEUTRAL	NA	192	Too-Many
TCGA.DC.6158	11	73632693	73741398	28	-0.3774	NEUTRAL	NA	5	"C2CD3,DNAJB13,PAAF1,UCP2,UCP3"
TCGA.AA.A010.01A	11	73635624	73675904	6	-0.3353	NEUTRAL	NA	2	"DNAJB13,PAAF1"
TCGA.AG.3909.01A	11	73662072	73715482	16	0.0179	NEUTRAL	NA	3	"DNAJB13,UCP2,UCP3"
TCGA.AG.3906.01A	11	73662072	74351558	104	-0.1132	NEUTRAL	NA	10	"C2CD3,DNAJB13,KCNE3,LIPT2,P4HA3,PGM2L1,POLD3,PPME1,UCP2,UCP3"
TCGA.AG.4009.01A	11	73669314	73997236	72	0.246	NEUTRAL	NA	6	"C2CD3,DNAJB13,P4HA3,PPME1,UCP2,UCP3"
TCGA.AG.A01J.01A	11	73669314	107506314	1346	0.1149	NEUTRAL	NA	165	Too-Many
TCGA.AA.A029.01A	11	73677131	108380302	1469	-0.0776	NEUTRAL	NA	175	Too-Many
TCGA.AM.5820	11	73678944	75524795	510	0.0856	NEUTRAL	NA	26	"ARRB1,C2CD3,CHRDL2,DGAT2,DNAJB13,GDPD5,KCNE3,KLHL35,LIPT2,MAP6,MOGAT2,NEU3,OR2AT4,P4HA3,PGM2L1,POLD3,PPME1,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,UCP2,UCP3,XRRA1"
TCGA.CA.5796	11	73678944	134944769	22003	0.0012	NEUTRAL	NA	403	Too-Many
TCGA.CK.5914.01A	11	73714857	73717922	5	0.0107	NEUTRAL	NA	1	UCP3
TCGA.AA.A00D.01A	11	73714857	73814616	24	-0.2677	NEUTRAL	NA	2	"C2CD3,UCP3"
TCGA.AG.A02X.01A	11	73715482	102993526	1177	-0.24	NEUTRAL	NA	146	Too-Many
TCGA.AG.3891.01A	11	73715482	110134638	1559	-0.115	NEUTRAL	NA	177	Too-Many
TCGA.AA.A01C.01A	11	73745549	74049466	60	0.1342	NEUTRAL	NA	4	"C2CD3,P4HA3,PGM2L1,PPME1"
TCGA.AG.A023.01A	11	73748472	111369281	1531	0.0505	NEUTRAL	NA	183	Too-Many
TCGA.AA.A010.01A	11	73785271	73801841	5	0.0369	NEUTRAL	NA	1	C2CD3
TCGA.AA.A010.01A	11	73803413	73834023	13	-0.4927	NEUTRAL	NA	1	C2CD3
TCGA.CK.5914.01A	11	73814616	73820028	3	0.0118	NEUTRAL	NA	1	C2CD3
TCGA.AG.3909.01A	11	73817375	73820028	2	0.1143	NEUTRAL	NA	1	C2CD3
TCGA.AA.A00D.01A	11	73817375	73872422	11	0.1671	NEUTRAL	NA	1	C2CD3
TCGA.AG.3909.01A	11	73872422	73881719	3	-0.028	NEUTRAL	NA	1	C2CD3
TCGA.AA.A00D.01A	11	73879382	73997236	13	-0.2047	NEUTRAL	NA	3	"C2CD3,P4HA3,PPME1"
TCGA.AG.4009.01A	11	74000061	74015287	4	-0.1413	NEUTRAL	NA	1	P4HA3
TCGA.AG.3909.01A	11	74000061	74022416	5	-0.1706	NEUTRAL	NA	1	P4HA3
TCGA.CK.5914.01A	11	74000061	74315710	24	-0.4904	NEUTRAL	NA	5	"KCNE3,LIPT2,P4HA3,PGM2L1,POLD3"
TCGA.AA.A00D.01A	11	74000061	74336405	27	0.3556	NEUTRAL	NA	5	"KCNE3,LIPT2,P4HA3,PGM2L1,POLD3"
TCGA.DC.6158	11	74015598	75403958	386	-0.1924	NEUTRAL	NA	19	"ARRB1,CHRDL2,GDPD5,KCNE3,KLHL35,LIPT2,MAP6,NEU3,OR2AT4,P4HA3,PGM2L1,POLD3,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,XRRA1"
TCGA.AA.3844	11	74052263	77045255	826	0.1354	NEUTRAL	NA	34	"ACER3,ARRB1,B3GNT6,C11orf30,CAPN5,CHRDL2,DGAT2,GDPD4,GDPD5,KCNE3,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MYO7A,NEU3,OMP,OR2AT4,PAK1,PGM2L1,POLD3,PRKRIR,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,TSKU,UVRAG,WNT11,XRRA1"
TCGA.AA.3811	11	74052263	79369736	1652	0.2419	NEUTRAL	NA	49	"AAMDC,ACER3,ALG8,AQP11,ARRB1,B3GNT6,C11orf30,CAPN5,CHRDL2,CLNS1A,DGAT2,GAB2,GDPD4,GDPD5,INTS4,KCNE3,KCTD14,KCTD21,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,NEU3,OMP,OR2AT4,PAK1,PGM2L1,POLD3,PRKRIR,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,TENM4,THRSP,TPBGL,TSKU,USP35,UVRAG,WNT11,XRRA1"
TCGA.AA.3864	11	74052263	100217434	8951	-0.0598	NEUTRAL	NA	120	Too-Many
TCGA.AA.A01C.01A	11	74056507	82996864	429	0.0208	NEUTRAL	NA	56	"AAMDC,ACER3,ALG8,ANKRD42,AQP11,ARRB1,B3GNT6,C11orf30,CAPN5,CCDC90B,CHRDL2,CLNS1A,DDIAS,DGAT2,FAM181B,GAB2,GDPD4,GDPD5,INTS4,KCNE3,KCTD14,KCTD21,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,NEU3,OMP,OR2AT4,PAK1,PCF11,PGM2L1,POLD3,PRCP,PRKRIR,RAB30,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,TENM4,THRSP,TPBGL,TSKU,USP35,UVRAG,WNT11,XRRA1"
TCGA.AG.3909.01A	11	74079482	74407490	19	-0.0242	NEUTRAL	NA	5	"CHRDL2,KCNE3,LIPT2,PGM2L1,POLD3"
TCGA.AA.3831	11	74094137	134944769	21947	-0.0004	NEUTRAL	NA	397	Too-Many
TCGA.AA.A00F.01A	11	74109045	75727812	113	0.1657	NEUTRAL	NA	21	"ARRB1,CHRDL2,DGAT2,GDPD5,KCNE3,KLHL35,LIPT2,MAP6,MOGAT2,NEU3,OR2AT4,PGM2L1,POLD3,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,UVRAG,XRRA1"
TCGA.AF.3914.01A	11	74168250	75046082	84	0.1333	NEUTRAL	NA	12	"ARRB1,CHRDL2,KCNE3,LIPT2,NEU3,OR2AT4,POLD3,RNF169,SLCO2B1,SPCS2,TPBGL,XRRA1"
TCGA.AG.A01W.01A	11	74178255	76548083	195	0.016	NEUTRAL	NA	26	"ARRB1,C11orf30,CHRDL2,DGAT2,GDPD5,KCNE3,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,NEU3,OR2AT4,POLD3,PRKRIR,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,TSKU,UVRAG,WNT11,XRRA1"
TCGA.CK.5914.01A	11	74322486	74799745	53	0.1231	NEUTRAL	NA	6	"CHRDL2,NEU3,POLD3,RNF169,SPCS2,XRRA1"
TCGA.AA.A00D.01A	11	74340215	77602338	221	-0.0773	NEUTRAL	NA	36	"AAMDC,ACER3,AQP11,ARRB1,B3GNT6,C11orf30,CAPN5,CHRDL2,CLNS1A,DGAT2,GDPD4,GDPD5,INTS4,KLHL35,LOC100506127,LRRC32,MAP6,MOGAT2,MYO7A,NEU3,OMP,OR2AT4,PAK1,POLD3,PRKRIR,RNF169,RPS3,RSF1,SERPINH1,SLCO2B1,SPCS2,TPBGL,TSKU,UVRAG,WNT11,XRRA1"
TCGA.AG.4009.01A	11	74407490	74441795	10	0.0269	NEUTRAL	NA	1	CHRDL2
TCGA.AG.3909.01A	11	74429725	74546584	8	0.208	NEUTRAL	NA	2	"CHRDL2,RNF169"
TCGA.AG.3906.01A	11	74500641	74874989	31	-0.2418	NEUTRAL	NA	6	"NEU3,OR2AT4,RNF169,SLCO2B1,SPCS2,XRRA1"
TCGA.AG.A015.01A	11	74500641	76886376	174	-0.0876	NEUTRAL	NA	27	"ACER3,ARRB1,B3GNT6,C11orf30,CAPN5,DGAT2,GDPD5,KLHL35,LOC100506127,LRRC32,MAP6,MOGAT2,MYO7A,NEU3,OMP,OR2AT4,PRKRIR,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,TSKU,UVRAG,WNT11,XRRA1"
TCGA.F5.6812	11	74631701	134888810	21728	0.2902	NEUTRAL	NA	391	Too-Many
TCGA.AG.3909.01A	11	74676766	74799745	6	-0.0137	NEUTRAL	NA	2	"NEU3,SPCS2"
TCGA.AG.3906.01A	11	74876785	75000968	24	0.0873	NEUTRAL	NA	3	"ARRB1,SLCO2B1,TPBGL"
TCGA.DM.A1D7	11	74901600	134944769	21733	-0.0061	NEUTRAL	NA	387	Too-Many
TCGA.AA.A01Q.01A	11	74913892	75115668	24	-0.2904	NEUTRAL	NA	4	"ARRB1,RPS3,SLCO2B1,TPBGL"
TCGA.CK.5914.01A	11	74982658	76091738	87	0.0443	NEUTRAL	NA	11	"ARRB1,DGAT2,GDPD5,KLHL35,MAP6,MOGAT2,PRKRIR,RPS3,SERPINH1,UVRAG,WNT11"
TCGA.AG.3898	11	75090099	134944769	21604	-0.0169	NEUTRAL	NA	384	Too-Many
TCGA.AG.3909.01A	11	75136398	75188627	16	0.1051	NEUTRAL	NA	2	"GDPD5,KLHL35"
TCGA.AF.3914.01A	11	75147933	111631491	1468	0.0282	NEUTRAL	NA	169	Too-Many
TCGA.AG.4009.01A	11	75150869	76731268	88	0.2327	NEUTRAL	NA	13	"ACER3,C11orf30,DGAT2,GDPD5,LOC100506127,LRRC32,MAP6,MOGAT2,PRKRIR,SERPINH1,TSKU,UVRAG,WNT11"
TCGA.AA.A00N.01A	11	75152156	75188627	12	0.2842	NEUTRAL	NA	1	GDPD5
TCGA.AG.3906.01A	11	75152674	76751174	89	-0.0779	NEUTRAL	NA	14	"ACER3,B3GNT6,C11orf30,DGAT2,GDPD5,LOC100506127,LRRC32,MAP6,MOGAT2,PRKRIR,SERPINH1,TSKU,UVRAG,WNT11"
TCGA.AA.A010.01A	11	75167735	76709740	84	0.2578	NEUTRAL	NA	13	"ACER3,C11orf30,DGAT2,GDPD5,LOC100506127,LRRC32,MAP6,MOGAT2,PRKRIR,SERPINH1,TSKU,UVRAG,WNT11"
TCGA.AA.A01Q.01A	11	75316832	75851728	31	0.0577	NEUTRAL	NA	4	"DGAT2,MAP6,MOGAT2,UVRAG"
TCGA.AA.A00N.01A	11	75479990	76234151	46	-0.119	NEUTRAL	NA	6	"C11orf30,DGAT2,LOC100506127,PRKRIR,UVRAG,WNT11"
TCGA.AG.3909.01A	11	75501640	77692478	187	0.0617	NEUTRAL	NA	20	"AAMDC,ACER3,AQP11,B3GNT6,C11orf30,CAPN5,CLNS1A,DGAT2,GDPD4,INTS4,LOC100506127,LRRC32,MYO7A,OMP,PAK1,PRKRIR,RSF1,TSKU,UVRAG,WNT11"
TCGA.AM.5820	11	75533804	75852447	42	-0.228	NEUTRAL	NA	1	UVRAG
TCGA.DC.6158	11	75543260	75709832	21	-0.3742	NEUTRAL	NA	1	UVRAG
TCGA.D5.6898	11	75640225	93962658	6194	0.1604	NEUTRAL	NA	79	"AAMDC,ACER3,ALG8,ANKRD42,AQP11,B3GNT6,C11orf30,C11orf54,C11orf73,CAPN5,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CEP295,CHORDC1,CLNS1A,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FAT3,FOLH1B,FZD4,GAB2,GDPD4,GRM5,HEPHL1,INTS4,KCTD14,KCTD21,LOC100506127,LRRC32,ME3,MED17,MTNR1B,MYO7A,NAALAD2,NARS2,NDUFC2,NDUFC2-KCTD14,NOX4,OMP,PAK1,PANX1,PCF11,PICALM,PRCP,PRKRIR,PRSS23,RAB30,RAB38,RSF1,SLC36A4,SMCO4,SYTL2,TAF1D,TENM4,THRSP,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TSKU,TYR,UBTFL1,USP35,UVRAG,VSTM5,WNT11"
TCGA.DC.6158	11	75841352	79075851	1041	-0.3102	NEUTRAL	NA	29	"AAMDC,ACER3,ALG8,AQP11,B3GNT6,C11orf30,CAPN5,CLNS1A,GAB2,GDPD4,INTS4,KCTD14,KCTD21,LOC100506127,LRRC32,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,OMP,PAK1,PRKRIR,RSF1,TENM4,THRSP,TSKU,USP35,UVRAG,WNT11"
TCGA.AM.5820	11	75853929	76038169	76	0.3612	NEUTRAL	NA	2	"UVRAG,WNT11"
TCGA.AM.5820	11	76044789	76244492	37	-0.2582	NEUTRAL	NA	3	"C11orf30,LOC100506127,PRKRIR"
TCGA.AA.A01Q.01A	11	76066584	76260949	23	0.1536	NEUTRAL	NA	3	"C11orf30,LOC100506127,PRKRIR"
TCGA.AA.3861.01A	11	76066584	77594830	149	-0.3632	NEUTRAL	NA	17	"AAMDC,ACER3,AQP11,B3GNT6,C11orf30,CAPN5,CLNS1A,GDPD4,INTS4,LOC100506127,LRRC32,MYO7A,OMP,PAK1,PRKRIR,RSF1,TSKU"
TCGA.AA.3862.01A	11	76066584	77594830	151	-0.2808	NEUTRAL	NA	17	"AAMDC,ACER3,AQP11,B3GNT6,C11orf30,CAPN5,CLNS1A,GDPD4,INTS4,LOC100506127,LRRC32,MYO7A,OMP,PAK1,PRKRIR,RSF1,TSKU"
TCGA.AA.A01K.01A	11	76066584	93544977	600	-0.2116	NEUTRAL	NA	74	"AAMDC,ACER3,ALG8,ANKRD42,AQP11,B3GNT6,C11orf30,C11orf54,C11orf73,CAPN5,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CEP295,CHORDC1,CLNS1A,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FAT3,FOLH1B,FZD4,GAB2,GDPD4,GRM5,INTS4,KCTD14,KCTD21,LOC100506127,LRRC32,ME3,MED17,MTNR1B,MYO7A,NAALAD2,NARS2,NDUFC2,NDUFC2-KCTD14,NOX4,OMP,PAK1,PCF11,PICALM,PRCP,PRKRIR,PRSS23,RAB30,RAB38,RSF1,SLC36A4,SMCO4,SYTL2,TAF1D,TENM4,THRSP,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TSKU,TYR,UBTFL1,USP35"
TCGA.AA.A00F.01A	11	76169210	94926557	540	0.1706	NEUTRAL	NA	89	"AAMDC,ACER3,ALG8,AMOTL1,ANKRD42,ANKRD49,AQP11,B3GNT6,C11orf30,C11orf54,C11orf73,C11orf97,CAPN5,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CEP295,CHORDC1,CLNS1A,CREBZF,CTSC,CWC15,DDIAS,DLG2,EED,ENDOD1,FAM181B,FAT3,FOLH1B,FUT4,FZD4,GAB2,GDPD4,GPR83,GRM5,HEPHL1,INTS4,IZUMO1R,KCTD14,KCTD21,KDM4D,KDM4E,LRRC32,ME3,MED17,MRE11A,MTNR1B,MYO7A,NAALAD2,NARS2,NDUFC2,NDUFC2-KCTD14,NOX4,OMP,PAK1,PANX1,PCF11,PICALM,PIWIL4,PRCP,PRSS23,RAB30,RAB38,RSF1,SESN3,SLC36A4,SMCO4,SRSF8,SYTL2,TAF1D,TENM4,THRSP,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TSKU,TYR,UBTFL1,USP35,VSTM5"
TCGA.AA.3509.01A	11	76246922	77671952	160	0.0028	NEUTRAL	NA	15	"AAMDC,ACER3,AQP11,B3GNT6,C11orf30,CAPN5,CLNS1A,GDPD4,INTS4,LRRC32,MYO7A,OMP,PAK1,RSF1,TSKU"
TCGA.AM.5820	11	76251817	76514419	114	0.3002	NEUTRAL	NA	3	"C11orf30,LRRC32,TSKU"
TCGA.AA.3968	11	76264748	76518549	114	-0.358	NEUTRAL	NA	2	"LRRC32,TSKU"
TCGA.AA.A01Q.01A	11	76370640	76506674	4	-0.5125	NEUTRAL	NA	2	"LRRC32,TSKU"
TCGA.CK.5914.01A	11	76370640	76701499	9	-0.4256	NEUTRAL	NA	3	"ACER3,LRRC32,TSKU"
TCGA.AA.A00N.01A	11	76370640	76908484	61	-0.1389	NEUTRAL	NA	7	"ACER3,B3GNT6,CAPN5,LRRC32,MYO7A,OMP,TSKU"
TCGA.AM.5820	11	76516667	76747624	57	-0.175	NEUTRAL	NA	2	"ACER3,B3GNT6"
TCGA.AA.A01Q.01A	11	76572004	76751174	12	0.3667	NEUTRAL	NA	2	"ACER3,B3GNT6"
TCGA.AG.A01W.01A	11	76586124	92263638	533	0.0621	NEUTRAL	NA	61	"AAMDC,ACER3,ALG8,ANKRD42,AQP11,B3GNT6,C11orf73,CAPN5,CCDC81,CCDC83,CCDC89,CCDC90B,CHORDC1,CLNS1A,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FAT3,FOLH1B,FZD4,GAB2,GDPD4,GRM5,INTS4,KCTD14,KCTD21,ME3,MYO7A,NAALAD2,NARS2,NDUFC2,NDUFC2-KCTD14,NOX4,OMP,PAK1,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,RSF1,SYTL2,TENM4,THRSP,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,USP35"
TCGA.AA.A010.01A	11	76726013	76841593	20	-0.3965	NEUTRAL	NA	5	"ACER3,B3GNT6,CAPN5,MYO7A,OMP"
TCGA.AF.6136	11	76728267	79222313	842	0.1896	NEUTRAL	NA	22	"AAMDC,ACER3,ALG8,AQP11,B3GNT6,CAPN5,CLNS1A,GAB2,GDPD4,INTS4,KCTD14,KCTD21,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,OMP,PAK1,RSF1,TENM4,THRSP,USP35"
TCGA.AG.4009.01A	11	76750546	76869295	19	-0.3445	NEUTRAL	NA	4	"B3GNT6,CAPN5,MYO7A,OMP"
TCGA.CK.5914.01A	11	76750546	76919422	56	-0.4465	NEUTRAL	NA	4	"B3GNT6,CAPN5,MYO7A,OMP"
TCGA.A6.6648	11	76752247	76837551	24	-0.161	NEUTRAL	NA	3	"B3GNT6,CAPN5,OMP"
TCGA.AG.3906.01A	11	76833599	77884840	134	0.0734	NEUTRAL	NA	15	"AAMDC,ALG8,AQP11,CAPN5,CLNS1A,GDPD4,INTS4,KCTD14,KCTD21,MYO7A,NDUFC2,NDUFC2-KCTD14,PAK1,RSF1,THRSP"
TCGA.A6.6648	11	76847912	134944769	21192	0.1674	NEUTRAL	NA	366	Too-Many
TCGA.AA.A010.01A	11	76853707	77043727	63	0.2744	NEUTRAL	NA	3	"GDPD4,MYO7A,PAK1"
TCGA.AA.A01Q.01A	11	76867659	94353995	497	0.1224	NEUTRAL	NA	75	"AAMDC,ALG8,ANKRD42,ANKRD49,AQP11,C11orf54,C11orf73,C11orf97,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CEP295,CHORDC1,CLNS1A,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FAT3,FOLH1B,FUT4,FZD4,GAB2,GDPD4,GPR83,GRM5,HEPHL1,INTS4,IZUMO1R,KCTD14,KCTD21,ME3,MED17,MRE11A,MTNR1B,MYO7A,NAALAD2,NARS2,NDUFC2,NDUFC2-KCTD14,NOX4,PAK1,PANX1,PCF11,PICALM,PIWIL4,PRCP,PRSS23,RAB30,RAB38,RSF1,SLC36A4,SMCO4,SYTL2,TAF1D,TENM4,THRSP,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,USP35,VSTM5"
TCGA.AG.4009.01A	11	76870434	77884840	124	0.3553	NEUTRAL	NA	14	"AAMDC,ALG8,AQP11,CLNS1A,GDPD4,INTS4,KCTD14,KCTD21,MYO7A,NDUFC2,NDUFC2-KCTD14,PAK1,RSF1,THRSP"
TCGA.AG.A00C.01A	11	76877053	89450546	447	-0.0994	NEUTRAL	NA	47	"AAMDC,ALG8,ANKRD42,AQP11,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CLNS1A,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FOLH1B,FZD4,GAB2,GDPD4,GRM5,INTS4,KCTD14,KCTD21,ME3,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,NOX4,PAK1,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,RSF1,SYTL2,TENM4,THRSP,TMEM126A,TMEM126B,TMEM135,TRIM77,TYR,USP35"
TCGA.AG.A015.01A	11	76903069	96106494	697	-0.1819	NEUTRAL	NA	87	"AAMDC,ALG8,AMOTL1,ANKRD42,ANKRD49,AQP11,C11orf54,C11orf73,C11orf97,CCDC67,CCDC81,CCDC82,CCDC83,CCDC89,CCDC90B,CEP295,CEP57,CHORDC1,CLNS1A,CREBZF,CTSC,CWC15,DDIAS,DLG2,EED,ENDOD1,FAM181B,FAM76B,FAT3,FOLH1B,FUT4,FZD4,GAB2,GDPD4,GPR83,GRM5,HEPHL1,INTS4,IZUMO1R,KCTD14,KCTD21,KDM4D,KDM4E,MAML2,ME3,MED17,MRE11A,MTMR2,MTNR1B,MYO7A,NAALAD2,NARS2,NDUFC2,NDUFC2-KCTD14,NOX4,PAK1,PANX1,PCF11,PICALM,PIWIL4,PRCP,PRSS23,RAB30,RAB38,RSF1,SESN3,SLC36A4,SMCO4,SRSF8,SYTL2,TAF1D,TENM4,THRSP,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,USP35,VSTM5"
TCGA.AA.A02K.01A	11	76905353	102651187	925	-0.0855	NEUTRAL	NA	105	Too-Many
TCGA.A6.3808.01A	11	76905369	77594830	77	0.3519	NEUTRAL	NA	8	"AAMDC,AQP11,CLNS1A,GDPD4,INTS4,MYO7A,PAK1,RSF1"
TCGA.AA.A00N.01A	11	76909493	77629815	82	0.365	NEUTRAL	NA	8	"AAMDC,AQP11,CLNS1A,GDPD4,INTS4,MYO7A,PAK1,RSF1"
TCGA.CM.6168	11	76917219	134944769	21162	-0.0023	NEUTRAL	NA	366	Too-Many
TCGA.CK.5914.01A	11	76919694	77048322	25	0.2418	NEUTRAL	NA	3	"GDPD4,MYO7A,PAK1"
TCGA.AA.3967.01A	11	76928244	89537387	428	-0.2796	NEUTRAL	NA	47	"AAMDC,ALG8,ANKRD42,AQP11,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CLNS1A,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FOLH1B,FZD4,GAB2,GDPD4,GRM5,INTS4,KCTD14,KCTD21,ME3,NARS2,NDUFC2,NDUFC2-KCTD14,NOX4,PAK1,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,RSF1,SYTL2,TENM4,THRSP,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM77,TYR,USP35"
TCGA.AM.5820	11	76939914	113972347	12731	0.0054	NEUTRAL	NA	180	Too-Many
TCGA.AA.3982	11	76968372	77151220	45	-0.0229	NEUTRAL	NA	2	"GDPD4,PAK1"
TCGA.AA.A010.01A	11	77085311	77335981	10	0.1612	NEUTRAL	NA	3	"AQP11,CLNS1A,PAK1"
TCGA.CK.5914.01A	11	77085311	77920483	84	0.0677	NEUTRAL	NA	13	"AAMDC,ALG8,AQP11,CLNS1A,INTS4,KCTD14,KCTD21,NDUFC2,NDUFC2-KCTD14,PAK1,RSF1,THRSP,USP35"
TCGA.AA.3844	11	77095802	79046387	640	-0.0021	NEUTRAL	NA	16	"AAMDC,ALG8,AQP11,CLNS1A,GAB2,INTS4,KCTD14,KCTD21,NARS2,NDUFC2,NDUFC2-KCTD14,PAK1,RSF1,TENM4,THRSP,USP35"
TCGA.AA.A00L.01A	11	77531534	77838377	44	0.3393	NEUTRAL	NA	8	"AAMDC,ALG8,INTS4,KCTD14,NDUFC2,NDUFC2-KCTD14,RSF1,THRSP"
TCGA.AG.3611.01A	11	77531534	78467798	75	-0.3186	NEUTRAL	NA	13	"AAMDC,ALG8,GAB2,INTS4,KCTD14,KCTD21,NARS2,NDUFC2,NDUFC2-KCTD14,RSF1,TENM4,THRSP,USP35"
TCGA.AA.A00D.01A	11	77602675	77838377	37	0.2486	NEUTRAL	NA	6	"ALG8,INTS4,KCTD14,NDUFC2,NDUFC2-KCTD14,THRSP"
TCGA.DY.A0XA	11	77666486	134944769	21024	0.2282	NEUTRAL	NA	359	Too-Many
TCGA.A6.2681	11	77671280	79358612	714	-0.4852	NEUTRAL	NA	11	"ALG8,GAB2,INTS4,KCTD14,KCTD21,NARS2,NDUFC2,NDUFC2-KCTD14,TENM4,THRSP,USP35"
TCGA.AA.3862.01A	11	77671315	82985635	141	0.1818	NEUTRAL	NA	18	"ALG8,ANKRD42,CCDC90B,DDIAS,FAM181B,GAB2,INTS4,KCTD14,KCTD21,NARS2,NDUFC2,NDUFC2-KCTD14,PCF11,PRCP,RAB30,TENM4,THRSP,USP35"
TCGA.AA.3861.01A	11	77814963	88059468	307	-0.1625	NEUTRAL	NA	30	"ALG8,ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FZD4,GAB2,KCTD21,ME3,NARS2,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,SYTL2,TENM4,TMEM126A,TMEM126B,TMEM135,USP35"
TCGA.AA.A00D.01A	11	77850486	77991595	13	-0.1711	NEUTRAL	NA	4	"ALG8,GAB2,KCTD21,USP35"
TCGA.AA.3509.01A	11	77850486	88300174	301	0.2086	NEUTRAL	NA	31	"ALG8,ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FZD4,GAB2,GRM5,KCTD21,ME3,NARS2,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,SYTL2,TENM4,TMEM126A,TMEM126B,TMEM135,USP35"
TCGA.AA.A00L.01A	11	77850486	107920570	730	-0.0203	NEUTRAL	NA	120	Too-Many
TCGA.AG.4009.01A	11	77918543	89431527	316	0.2653	NEUTRAL	NA	32	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FOLH1B,FZD4,GAB2,GRM5,ME3,NARS2,NOX4,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,SYTL2,TENM4,TMEM126A,TMEM126B,TMEM135,TYR,USP35"
TCGA.AG.3906.01A	11	77930266	107431443	954	-0.0673	NEUTRAL	NA	112	Too-Many
TCGA.AA.3941	11	78058720	79226997	551	-0.2978	NEUTRAL	NA	3	"GAB2,NARS2,TENM4"
TCGA.AA.A00N.01A	11	78147669	78383027	18	-0.3334	NEUTRAL	NA	2	"NARS2,TENM4"
TCGA.AG.3909.01A	11	78147669	78387149	19	-0.2829	NEUTRAL	NA	2	"NARS2,TENM4"
TCGA.CK.5914.01A	11	78147669	78399047	20	-0.4669	NEUTRAL	NA	2	"NARS2,TENM4"
TCGA.AA.A00D.01A	11	78147669	78443310	17	0.2764	NEUTRAL	NA	2	"NARS2,TENM4"
TCGA.AG.A00Y.01A	11	78176894	111385492	1163	-0.0631	NEUTRAL	NA	133	Too-Many
TCGA.AA.3982	11	78202387	78831806	302	0.2527	NEUTRAL	NA	2	"NARS2,TENM4"
TCGA.A6.5667	11	78353083	134601011	20677	0.2543	NEUTRAL	NA	349	Too-Many
TCGA.D5.6534	11	78367247	78395188	9	-0.4541	NEUTRAL	NA	1	TENM4
TCGA.D5.6534	11	78396038	81497906	1482	0.1859	NEUTRAL	NA	1	TENM4
TCGA.CK.5914.01A	11	78412532	78437073	7	0.3235	NEUTRAL	NA	1	TENM4
TCGA.AA.A00D.01A	11	78449448	89882147	232	-0.0697	NEUTRAL	NA	38	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FOLH1B,FZD4,GRM5,ME3,NAALAD2,NOX4,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,SYTL2,TENM4,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AA.A00N.01A	11	78482017	82868431	37	0.3365	NEUTRAL	NA	6	"DDIAS,FAM181B,PCF11,PRCP,RAB30,TENM4"
TCGA.CK.5914.01A	11	78565099	82564190	18	0.1378	NEUTRAL	NA	3	"FAM181B,PRCP,TENM4"
TCGA.A6.3807	11	78624207	134944769	20641	0.0694	NEUTRAL	NA	349	Too-Many
TCGA.G4.6625	11	78643341	129830795	18484	0.0767	NEUTRAL	NA	330	Too-Many
TCGA.AA.3982	11	78857682	79453053	314	0.2219	NEUTRAL	NA	1	TENM4
TCGA.AA.3977	11	78857682	112837877	11695	-0.0721	NEUTRAL	NA	154	Too-Many
TCGA.AA.3850	11	78861960	79365419	275	0.10735	NEUTRAL	NA	1	TENM4
TCGA.AA.3844	11	79052959	79365419	165	-0.053	NEUTRAL	NA	1	TENM4
TCGA.DC.6158	11	79077235	79128380	39	0.0474	NEUTRAL	NA	1	TENM4
TCGA.AG.3909.01A	11	79113041	82644215	18	0.3268	NEUTRAL	NA	4	"DDIAS,FAM181B,PRCP,TENM4"
TCGA.DC.6158	11	79128400	81726748	1144	-0.3148	NEUTRAL	NA	1	TENM4
TCGA.AF.6136	11	79226027	81896530	1164	-0.2743	NEUTRAL	NA	0	None
TCGA.A6.2681	11	79359379	94848742	5350	-0.0029	NEUTRAL	NA	63	"AMOTL1,ANKRD42,ANKRD49,C11orf54,C11orf73,C11orf97,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CEP295,CHORDC1,CREBZF,CTSC,CWC15,DDIAS,DLG2,EED,ENDOD1,FAM181B,FAT3,FOLH1B,FUT4,FZD4,GPR83,GRM5,HEPHL1,IZUMO1R,KDM4D,KDM4E,ME3,MED17,MRE11A,MTNR1B,NAALAD2,NOX4,PANX1,PCF11,PICALM,PIWIL4,PRCP,PRSS23,RAB30,RAB38,SLC36A4,SMCO4,SRSF8,SYTL2,TAF1D,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,VSTM5"
TCGA.AA.3844	11	79365549	107412127	9781	-0.3781	NEUTRAL	NA	109	Too-Many
TCGA.AA.3811	11	79372388	82221177	1196	-0.3259	NEUTRAL	NA	0	None
TCGA.AA.3867	11	79374976	83664514	1656	-0.0222	NEUTRAL	NA	8	"ANKRD42,CCDC90B,DDIAS,DLG2,FAM181B,PCF11,PRCP,RAB30"
TCGA.A6.2685	11	79396635	134944769	20264	-0.0031	NEUTRAL	NA	348	Too-Many
TCGA.AA.3968	11	79445772	86963937	2680	0.0714	NEUTRAL	NA	22	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,DDIAS,DLG2,EED,FAM181B,FZD4,ME3,PCF11,PICALM,PRCP,PRSS23,RAB30,SYTL2,TMEM126A,TMEM126B,TMEM135"
TCGA.AA.3982	11	79466811	85267365	2078	-0.2603	NEUTRAL	NA	8	"ANKRD42,CCDC90B,DDIAS,DLG2,FAM181B,PCF11,PRCP,RAB30"
TCGA.F4.6460	11	79648500	81399971	809	-0.2604	NEUTRAL	NA	0	None
TCGA.A6.5665	11	80247444	93253902	4343	0.2089	NEUTRAL	NA	43	"ANKRD42,C11orf73,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CHORDC1,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FAT3,FOLH1B,FZD4,GRM5,ME3,MTNR1B,NAALAD2,NOX4,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,SLC36A4,SMCO4,SYTL2,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.A6.2672	11	80282363	112589596	10905	0.1575	NEUTRAL	NA	152	Too-Many
TCGA.A6.5661	11	80295639	112068592	10723	0.1568	NEUTRAL	NA	150	Too-Many
TCGA.AA.3695	11	80351717	80458926	42	-0.329	NEUTRAL	NA	0	None
TCGA.AA.3695	11	80462333	134944769	19864	-0.0002	NEUTRAL	NA	348	Too-Many
TCGA.DT.5265	11	80481379	81793836	583	0.1244	NEUTRAL	NA	0	None
TCGA.NH.A6GB	11	80537335	80615665	39	0.0242	NEUTRAL	NA	0	None
TCGA.NH.A6GB	11	80703966	80758125	29	-0.0761	NEUTRAL	NA	0	None
TCGA.NH.A6GB	11	80932826	134944769	19631	-0.033	NEUTRAL	NA	348	Too-Many
TCGA.DY.A1DC	11	80982031	81458966	227	0.0211	NEUTRAL	NA	0	None
TCGA.D5.5538	11	81378102	134944769	19408	-0.0004	NEUTRAL	NA	348	Too-Many
TCGA.F4.6460	11	81402695	91952282	3374	0.0966	NEUTRAL	NA	38	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CHORDC1,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FOLH1B,FZD4,GRM5,ME3,NAALAD2,NOX4,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,SYTL2,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.DM.A1HB	11	81474348	108829357	9064	-0.0374	NEUTRAL	NA	121	Too-Many
TCGA.DY.A1DC	11	81474374	81538167	42	0.0507	NEUTRAL	NA	0	None
TCGA.A6.6142	11	81524660	134944769	19364	0.1651	NEUTRAL	NA	348	Too-Many
TCGA.D5.6534	11	81524660	134944769	19300	0.2012	NEUTRAL	NA	348	Too-Many
TCGA.DY.A1DC	11	81608443	81807218	74	0.0169	NEUTRAL	NA	0	None
TCGA.AA.3850	11	81650210	81760104	42	-0.23515	NEUTRAL	NA	0	None
TCGA.AG.4021	11	81685128	95184354	4442	0.0309	NEUTRAL	NA	64	"AMOTL1,ANKRD42,ANKRD49,C11orf54,C11orf73,C11orf97,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CEP295,CHORDC1,CREBZF,CTSC,CWC15,DDIAS,DLG2,EED,ENDOD1,FAM181B,FAT3,FOLH1B,FUT4,FZD4,GPR83,GRM5,HEPHL1,IZUMO1R,KDM4D,KDM4E,ME3,MED17,MRE11A,MTNR1B,NAALAD2,NOX4,PANX1,PCF11,PICALM,PIWIL4,PRCP,PRSS23,RAB30,RAB38,SESN3,SLC36A4,SMCO4,SRSF8,SYTL2,TAF1D,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,VSTM5"
TCGA.DC.6158	11	81775949	81794241	8	-0.3148	NEUTRAL	NA	0	None
TCGA.DT.5265	11	81794012	82824133	345	-0.4619	NEUTRAL	NA	4	"DDIAS,FAM181B,PRCP,RAB30"
TCGA.DY.A1DC	11	81889959	84152032	735	0.0262	NEUTRAL	NA	8	"ANKRD42,CCDC90B,DDIAS,DLG2,FAM181B,PCF11,PRCP,RAB30"
TCGA.AA.3850	11	81896530	82053536	62	-0.46635	NEUTRAL	NA	0	None
TCGA.AF.6136	11	81898807	86183852	1286	0.0679	NEUTRAL	NA	19	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,DDIAS,DLG2,EED,FAM181B,ME3,PCF11,PICALM,PRCP,RAB30,SYTL2,TMEM126A,TMEM126B"
TCGA.DC.6158	11	82017935	82025476	3	-0.0986	NEUTRAL	NA	0	None
TCGA.DC.6158	11	82053536	95427872	4446	-0.2924	NEUTRAL	NA	64	"AMOTL1,ANKRD42,ANKRD49,C11orf54,C11orf73,C11orf97,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CEP295,CHORDC1,CREBZF,CTSC,CWC15,DDIAS,DLG2,EED,ENDOD1,FAM181B,FAT3,FOLH1B,FUT4,FZD4,GPR83,GRM5,HEPHL1,IZUMO1R,KDM4D,KDM4E,ME3,MED17,MRE11A,MTNR1B,NAALAD2,NOX4,PANX1,PCF11,PICALM,PIWIL4,PRCP,PRSS23,RAB30,RAB38,SESN3,SLC36A4,SMCO4,SRSF8,SYTL2,TAF1D,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,VSTM5"
TCGA.AA.3850	11	82093498	82313623	73	-0.25415	NEUTRAL	NA	0	None
TCGA.AA.3811	11	82223527	83581940	418	0.0241	NEUTRAL	NA	8	"ANKRD42,CCDC90B,DDIAS,DLG2,FAM181B,PCF11,PRCP,RAB30"
TCGA.AA.3850	11	82324064	83065899	213	0.12995	NEUTRAL	NA	7	"ANKRD42,CCDC90B,DDIAS,FAM181B,PCF11,PRCP,RAB30"
TCGA.AG.3881	11	82332238	134944769	19071	-0.2976	NEUTRAL	NA	348	Too-Many
TCGA.AA.3941	11	82365019	82560809	53	-0.2609	NEUTRAL	NA	2	"FAM181B,PRCP"
TCGA.AA.3941	11	82565902	82961057	101	-0.1261	NEUTRAL	NA	5	"ANKRD42,DDIAS,PCF11,PRCP,RAB30"
TCGA.CK.5914.01A	11	82570972	83172991	47	-0.3524	NEUTRAL	NA	7	"ANKRD42,CCDC90B,DDIAS,DLG2,PCF11,PRCP,RAB30"
TCGA.AG.3909.01A	11	82693180	82868431	5	-0.2283	NEUTRAL	NA	2	"PCF11,RAB30"
TCGA.G4.6315	11	82860714	134944769	18916	-0.1924	NEUTRAL	NA	344	Too-Many
TCGA.AG.3909.01A	11	82879811	82893996	8	-0.2111	NEUTRAL	NA	1	PCF11
TCGA.AG.3909.01A	11	82895691	85347041	55	0.3067	NEUTRAL	NA	5	"ANKRD42,CCDC90B,DLG2,PCF11,TMEM126B"
TCGA.AA.3862.01A	11	82989722	86176083	140	-0.5	NEUTRAL	NA	13	"C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,DLG2,EED,ME3,PICALM,SYTL2,TMEM126A,TMEM126B"
TCGA.AA.3850	11	83065930	84172073	375	-0.48265	NEUTRAL	NA	1	DLG2
TCGA.AA.A010.01A	11	83172991	85309633	32	-0.2935	NEUTRAL	NA	1	DLG2
TCGA.AA.3811	11	83585780	85364555	514	-0.3247	NEUTRAL	NA	3	"DLG2,TMEM126A,TMEM126B"
TCGA.AA.3867	11	83665359	83683775	16	-0.4983	NEUTRAL	NA	1	DLG2
TCGA.AA.3867	11	83683789	84165250	154	-0.0271	NEUTRAL	NA	1	DLG2
TCGA.DY.A1DG	11	83784486	106614751	7830	-0.0145	NEUTRAL	NA	100	"AASDHPPT,AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,BIRC2,BIRC3,C11orf54,C11orf70,C11orf73,C11orf97,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC67,CCDC81,CCDC82,CCDC83,CCDC89,CEP126,CEP295,CEP57,CHORDC1,CNTN5,CREBZF,CTSC,CWC15,DCUN1D5,DDI1,DLG2,DYNC2H1,EED,ENDOD1,FAM76B,FAT3,FOLH1B,FUT4,FZD4,GPR83,GRIA4,GRM5,GUCY1A2,HEPHL1,IZUMO1R,JRKL,KBTBD3,KDM4D,KDM4E,MAML2,ME3,MED17,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MSANTD4,MTMR2,MTNR1B,NAALAD2,NOX4,PANX1,PDGFD,PGR,PICALM,PIWIL4,PRSS23,RAB38,SESN3,SLC36A4,SMCO4,SRSF8,SYTL2,TAF1D,TMEM123,TMEM126A,TMEM126B,TMEM133,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TRPC6,TYR,UBTFL1,VSTM5,YAP1"
TCGA.DY.A1DC	11	84179550	87435340	1055	0.0377	NEUTRAL	NA	15	"C11orf73,CCDC81,CCDC83,CCDC89,CREBZF,DLG2,EED,FZD4,ME3,PICALM,PRSS23,SYTL2,TMEM126A,TMEM126B,TMEM135"
TCGA.AA.3867	11	84183434	109859853	8587	0.022	NEUTRAL	NA	115	Too-Many
TCGA.G4.6626	11	84546911	84878531	136	-0.5059	NEUTRAL	NA	1	DLG2
TCGA.AA.A00N.01A	11	84822646	85361256	9	-0.0982	NEUTRAL	NA	3	"DLG2,TMEM126A,TMEM126B"
TCGA.G4.6626	11	84897731	104993408	7020	0.2031	NEUTRAL	NA	94	"AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,BIRC2,BIRC3,C11orf54,C11orf70,C11orf73,C11orf97,CARD16,CARD17,CASP1,CASP12,CASP4,CASP5,CCDC67,CCDC81,CCDC82,CCDC83,CCDC89,CEP126,CEP295,CEP57,CHORDC1,CNTN5,CREBZF,CTSC,CWC15,DCUN1D5,DDI1,DLG2,DYNC2H1,EED,ENDOD1,FAM76B,FAT3,FOLH1B,FUT4,FZD4,GPR83,GRM5,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,ME3,MED17,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MTMR2,MTNR1B,NAALAD2,NOX4,PANX1,PDGFD,PGR,PICALM,PIWIL4,PRSS23,RAB38,SESN3,SLC36A4,SMCO4,SRSF8,SYTL2,TAF1D,TMEM123,TMEM126A,TMEM126B,TMEM133,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TRPC6,TYR,UBTFL1,VSTM5,YAP1"
TCGA.AA.3850	11	85018111	87281494	747	0.07595	NEUTRAL	NA	15	"C11orf73,CCDC81,CCDC83,CCDC89,CREBZF,DLG2,EED,FZD4,ME3,PICALM,PRSS23,SYTL2,TMEM126A,TMEM126B,TMEM135"
TCGA.AA.3941	11	85245771	87220985	694	-0.2566	NEUTRAL	NA	15	"C11orf73,CCDC81,CCDC83,CCDC89,CREBZF,DLG2,EED,FZD4,ME3,PICALM,PRSS23,SYTL2,TMEM126A,TMEM126B,TMEM135"
TCGA.AA.3982	11	85287943	87083151	638	0.2653	NEUTRAL	NA	15	"C11orf73,CCDC81,CCDC83,CCDC89,CREBZF,DLG2,EED,FZD4,ME3,PICALM,PRSS23,SYTL2,TMEM126A,TMEM126B,TMEM135"
TCGA.AA.A01C.01A	11	85342693	93170692	273	0.1064	NEUTRAL	NA	34	"C11orf73,CCDC67,CCDC81,CCDC83,CCDC89,CHORDC1,CREBZF,CTSC,EED,FAT3,FOLH1B,FZD4,GRM5,ME3,MTNR1B,NAALAD2,NOX4,PICALM,PRSS23,RAB38,SLC36A4,SYTL2,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AA.A00Q.01A	11	85345113	85468621	30	-0.3931	NEUTRAL	NA	5	"CCDC89,CREBZF,SYTL2,TMEM126A,TMEM126B"
TCGA.AA.3811	11	85374024	87083151	626	0.1733	NEUTRAL	NA	12	"C11orf73,CCDC81,CCDC83,CCDC89,CREBZF,EED,FZD4,ME3,PICALM,PRSS23,SYTL2,TMEM135"
TCGA.CK.5914.01A	11	85374943	86382763	100	0.0392	NEUTRAL	NA	9	"C11orf73,CCDC81,CCDC83,CCDC89,CREBZF,EED,ME3,PICALM,SYTL2"
TCGA.DM.A288	11	85395651	134944769	18125	-0.0046	NEUTRAL	NA	337	Too-Many
TCGA.AG.3909.01A	11	85396019	85956225	54	0.2049	NEUTRAL	NA	5	"CCDC83,CCDC89,EED,PICALM,SYTL2"
TCGA.AA.3527	11	85557158	134944769	18129	0.0091	NEUTRAL	NA	335	Too-Many
TCGA.AA.A00Q.01A	11	85576113	112103831	857	-0.045	NEUTRAL	NA	138	Too-Many
TCGA.AA.A00N.01A	11	85670000	85956225	21	0.2496	NEUTRAL	NA	2	"EED,PICALM"
TCGA.AA.3930.01A	11	85685703	85742461	18	-0.0276	NEUTRAL	NA	1	PICALM
TCGA.AA.3930.01A	11	85779643	85967381	6	-0.426	NEUTRAL	NA	2	"EED,PICALM"
TCGA.AA.3930.01A	11	85968501	86382763	41	0.1208	NEUTRAL	NA	4	"C11orf73,CCDC81,EED,ME3"
TCGA.AA.A00N.01A	11	85975193	86176083	33	0.0163	NEUTRAL	NA	4	"C11orf73,CCDC81,EED,ME3"
TCGA.AG.3909.01A	11	85977098	86382763	37	0.2997	NEUTRAL	NA	4	"C11orf73,CCDC81,EED,ME3"
TCGA.AA.A010.01A	11	86103555	86119122	6	-0.395	NEUTRAL	NA	1	CCDC81
TCGA.AF.6136	11	86188151	87165438	405	-0.2786	NEUTRAL	NA	4	"FZD4,ME3,PRSS23,TMEM135"
TCGA.AA.3862.01A	11	86198332	88337855	47	0.1706	NEUTRAL	NA	7	"CTSC,FZD4,GRM5,ME3,PRSS23,RAB38,TMEM135"
TCGA.DT.5265	11	86373816	88758590	906	0.0942	NEUTRAL	NA	7	"CTSC,FZD4,GRM5,ME3,PRSS23,RAB38,TMEM135"
TCGA.AA.3930.01A	11	86518654	89402528	71	-0.1694	NEUTRAL	NA	9	"CTSC,FOLH1B,FZD4,GRM5,NOX4,PRSS23,RAB38,TMEM135,TYR"
TCGA.AA.A00N.01A	11	86665856	87032226	16	0.0259	NEUTRAL	NA	2	"FZD4,TMEM135"
TCGA.CK.5914.01A	11	86665856	89450546	80	0.2113	NEUTRAL	NA	9	"CTSC,FOLH1B,FZD4,GRM5,NOX4,RAB38,TMEM135,TRIM77,TYR"
TCGA.AA.A010.01A	11	86665856	89537387	85	0.1955	NEUTRAL	NA	10	"CTSC,FOLH1B,FZD4,GRM5,NOX4,RAB38,TMEM135,TRIM49,TRIM77,TYR"
TCGA.AG.3909.01A	11	86665856	89880481	88	0.2082	NEUTRAL	NA	17	"CTSC,FOLH1B,FZD4,GRM5,NAALAD2,NOX4,RAB38,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AA.3968	11	86964597	95748460	2997	-0.4943	NEUTRAL	NA	47	"AMOTL1,ANKRD49,C11orf54,C11orf97,CCDC67,CEP295,CEP57,CHORDC1,CTSC,CWC15,ENDOD1,FAM76B,FAT3,FOLH1B,FUT4,GPR83,GRM5,HEPHL1,IZUMO1R,KDM4D,KDM4E,MAML2,MED17,MRE11A,MTMR2,MTNR1B,NAALAD2,NOX4,PANX1,PIWIL4,RAB38,SESN3,SLC36A4,SMCO4,SRSF8,TAF1D,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,VSTM5"
TCGA.AA.3982	11	87090724	92012551	1544	-0.3713	NEUTRAL	NA	16	"CHORDC1,CTSC,FOLH1B,GRM5,NAALAD2,NOX4,RAB38,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AA.3811	11	87090724	93166367	1942	-0.3185	NEUTRAL	NA	20	"CCDC67,CHORDC1,CTSC,FAT3,FOLH1B,GRM5,MTNR1B,NAALAD2,NOX4,RAB38,SLC36A4,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AF.6136	11	87167744	90075634	805	0.018	NEUTRAL	NA	16	"CHORDC1,CTSC,FOLH1B,GRM5,NAALAD2,NOX4,RAB38,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AG.A01Y	11	87206137	93423236	2007	0.0057	NEUTRAL	NA	22	"CCDC67,CEP295,CHORDC1,CTSC,FAT3,FOLH1B,GRM5,MTNR1B,NAALAD2,NOX4,RAB38,SLC36A4,SMCO4,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.DY.A1DC	11	87453026	87600006	53	0.0171	NEUTRAL	NA	0	None
TCGA.DY.A1DC	11	87618138	100155499	4334	0.0078	NEUTRAL	NA	49	"AMOTL1,ANKRD49,C11orf54,C11orf97,CCDC67,CCDC82,CEP295,CEP57,CHORDC1,CNTN5,CTSC,CWC15,ENDOD1,FAM76B,FAT3,FOLH1B,FUT4,GPR83,GRM5,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,MED17,MRE11A,MTMR2,MTNR1B,NAALAD2,NOX4,PANX1,PIWIL4,RAB38,SESN3,SLC36A4,SMCO4,SRSF8,TAF1D,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,VSTM5"
TCGA.A6.A56B	11	87678241	134944769	17225	0.2964	NEUTRAL	NA	326	Too-Many
TCGA.AA.3712	11	88380386	134944769	17072	-0.4154	NEUTRAL	NA	324	Too-Many
TCGA.AF.2692	11	88683753	134944769	16948	-0.4244	NEUTRAL	NA	324	Too-Many
TCGA.DT.5265	11	88761806	116574583	9612	-0.4787	NEUTRAL	NA	147	Too-Many
TCGA.AF.2691	11	88876844	134944769	16904	-0.1401	NEUTRAL	NA	323	Too-Many
TCGA.AA.3930.01A	11	89403519	89431527	11	0.3146	NEUTRAL	NA	1	FOLH1B
TCGA.A6.3808.01A	11	89407235	89450546	15	-0.5051	NEUTRAL	NA	2	"FOLH1B,TRIM77"
TCGA.AA.3930.01A	11	89443420	92532245	53	-0.2201	NEUTRAL	NA	11	"CHORDC1,FAT3,NAALAD2,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,UBTFL1"
TCGA.AG.4009.01A	11	89531360	89730283	7	-0.1645	NEUTRAL	NA	5	"TRIM49,TRIM49D1,TRIM49D2,TRIM64,TRIM64B"
TCGA.CK.5914.01A	11	89531360	89883623	20	-0.2182	NEUTRAL	NA	8	"NAALAD2,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,UBTFL1"
TCGA.AG.A00C.01A	11	89531360	89951227	38	0.2166	NEUTRAL	NA	9	"CHORDC1,NAALAD2,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,UBTFL1"
TCGA.AG.4009.01A	11	89819172	89868725	4	0.3686	NEUTRAL	NA	2	"NAALAD2,UBTFL1"
TCGA.AA.A010.01A	11	89819172	89938577	24	-0.4799	NEUTRAL	NA	3	"CHORDC1,NAALAD2,UBTFL1"
TCGA.AA.3967.01A	11	89819172	93212125	85	-0.35	NEUTRAL	NA	8	"CCDC67,CHORDC1,FAT3,MTNR1B,NAALAD2,SLC36A4,SMCO4,UBTFL1"
TCGA.A6.3808.01A	11	89819901	93103212	75	0.0786	NEUTRAL	NA	7	"CCDC67,CHORDC1,FAT3,MTNR1B,NAALAD2,SLC36A4,UBTFL1"
TCGA.DM.A28M.01A	11	89867871	134257391	2772	-0.1201	NEUTRAL	NA	312	Too-Many
TCGA.AG.4009.01A	11	89880481	89943632	22	-0.1766	NEUTRAL	NA	2	"CHORDC1,NAALAD2"
TCGA.AA.A00D.01A	11	89883623	89914772	12	0.3734	NEUTRAL	NA	1	NAALAD2
TCGA.AA.A00D.01A	11	89916034	89938577	6	-0.0973	NEUTRAL	NA	2	"CHORDC1,NAALAD2"
TCGA.AA.A00N.01A	11	89916034	89939304	7	-0.2833	NEUTRAL	NA	2	"CHORDC1,NAALAD2"
TCGA.AA.A010.01A	11	89939304	94731690	212	0.283	NEUTRAL	NA	23	"AMOTL1,ANKRD49,C11orf54,C11orf97,CCDC67,CEP295,CHORDC1,CWC15,FAT3,FUT4,GPR83,HEPHL1,IZUMO1R,KDM4D,MED17,MRE11A,MTNR1B,PANX1,PIWIL4,SLC36A4,SMCO4,TAF1D,VSTM5"
TCGA.AG.4009.01A	11	89944366	111369281	815	0.271	NEUTRAL	NA	94	"AASDHPPT,ACAT1,ALKBH8,AMOTL1,ANGPTL5,ANKRD49,ARHGAP20,ARHGAP42,ATM,BIRC2,BIRC3,BTG4,C11orf53,C11orf54,C11orf65,C11orf70,C11orf87,C11orf97,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC67,CCDC82,CEP126,CEP295,CEP57,CHORDC1,CNTN5,COLCA1,COLCA2,CUL5,CWC15,CWF19L2,DCUN1D5,DDI1,DDX10,DYNC2H1,ELMOD1,ENDOD1,EXPH5,FAM76B,FAT3,FDX1,FUT4,GPR83,GRIA4,GUCY1A2,HEPHL1,IZUMO1R,JRKL,KBTBD3,KDELC2,KDM4D,KDM4E,MAML2,MED17,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MSANTD4,MTMR2,MTNR1B,NPAT,PANX1,PDGFD,PGR,PIWIL4,POU2AF1,RAB39A,RDX,SESN3,SLC35F2,SLC36A4,SLN,SMCO4,SRSF8,TAF1D,TMEM123,TMEM133,TRPC6,VSTM5,YAP1,ZC3H12C"
TCGA.AA.3509.01A	11	89951227	93432406	70	0.3153	NEUTRAL	NA	7	"CCDC67,CEP295,CHORDC1,FAT3,MTNR1B,SLC36A4,SMCO4"
TCGA.AG.A00C.01A	11	89955994	93472335	64	-0.094	NEUTRAL	NA	8	"CCDC67,CEP295,CHORDC1,FAT3,MTNR1B,SLC36A4,SMCO4,TAF1D"
TCGA.A6.6653	11	90038375	119344818	10321	0.0015	NEUTRAL	NA	198	Too-Many
TCGA.AF.6136	11	90082674	134944769	16699	-0.3375	NEUTRAL	NA	310	Too-Many
TCGA.CK.5912	11	91352620	134944769	16231	0.0262	NEUTRAL	NA	310	Too-Many
TCGA.F4.6461	11	91783749	116764581	8910	-0.4693	NEUTRAL	NA	140	Too-Many
TCGA.AA.3850	11	91866698	91956924	36	-0.12125	NEUTRAL	NA	0	None
TCGA.F4.6460	11	91954749	91973527	15	-0.4672	NEUTRAL	NA	0	None
TCGA.F4.6460	11	91978987	108475819	5766	0.1012	NEUTRAL	NA	82	"AASDHPPT,ACAT1,ALKBH8,AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,ATM,BIRC2,BIRC3,C11orf54,C11orf65,C11orf70,C11orf97,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC67,CCDC82,CEP126,CEP295,CEP57,CNTN5,CUL5,CWC15,CWF19L2,DCUN1D5,DDI1,DYNC2H1,ELMOD1,ENDOD1,EXPH5,FAM76B,FAT3,FUT4,GPR83,GRIA4,GUCY1A2,HEPHL1,IZUMO1R,JRKL,KBTBD3,KDELC2,KDM4D,KDM4E,MAML2,MED17,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MSANTD4,MTMR2,MTNR1B,NPAT,PANX1,PDGFD,PGR,PIWIL4,RAB39A,SESN3,SLC35F2,SLC36A4,SLN,SMCO4,SRSF8,TAF1D,TMEM123,TMEM133,TRPC6,VSTM5,YAP1"
TCGA.AA.3850	11	92000573	92865744	325	-0.15075	NEUTRAL	NA	2	"FAT3,MTNR1B"
TCGA.AA.3982	11	92015938	96559936	1632	0.0706	NEUTRAL	NA	32	"AMOTL1,ANKRD49,C11orf54,C11orf97,CCDC67,CCDC82,CEP295,CEP57,CWC15,ENDOD1,FAM76B,FAT3,FUT4,GPR83,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,MED17,MRE11A,MTMR2,MTNR1B,PANX1,PIWIL4,SESN3,SLC36A4,SMCO4,SRSF8,TAF1D,VSTM5"
TCGA.AA.A00D.01A	11	92085242	92714631	9	-0.2361	NEUTRAL	NA	2	"FAT3,MTNR1B"
TCGA.AG.A01W.01A	11	92521305	93056357	31	0.2324	NEUTRAL	NA	3	"FAT3,MTNR1B,SLC36A4"
TCGA.AA.3930.01A	11	92538279	92714631	20	0.1317	NEUTRAL	NA	2	"FAT3,MTNR1B"
TCGA.AG.3909.01A	11	92590333	93088496	21	-0.2955	NEUTRAL	NA	4	"CCDC67,FAT3,MTNR1B,SLC36A4"
TCGA.AA.A00N.01A	11	92590333	93913897	108	-0.0773	NEUTRAL	NA	12	"C11orf54,CCDC67,CEP295,FAT3,HEPHL1,MED17,MTNR1B,PANX1,SLC36A4,SMCO4,TAF1D,VSTM5"
TCGA.CK.5914.01A	11	92623650	92914808	10	0.3646	NEUTRAL	NA	3	"FAT3,MTNR1B,SLC36A4"
TCGA.AA.A00D.01A	11	92881686	92915955	8	0.1592	NEUTRAL	NA	1	SLC36A4
TCGA.AA.3930.01A	11	92881686	93472335	54	-0.1682	NEUTRAL	NA	5	"CCDC67,CEP295,SLC36A4,SMCO4,TAF1D"
TCGA.CK.5914.01A	11	92915955	93461849	41	-0.2163	NEUTRAL	NA	4	"CCDC67,CEP295,SLC36A4,SMCO4"
TCGA.AA.A00D.01A	11	92917555	93472335	12	-0.4992	NEUTRAL	NA	5	"CCDC67,CEP295,SLC36A4,SMCO4,TAF1D"
TCGA.AA.3850	11	92941752	92965636	5	0.35575	NEUTRAL	NA	0	None
TCGA.AA.3850	11	92996839	93957404	336	0.04645	NEUTRAL	NA	9	"C11orf54,CCDC67,CEP295,HEPHL1,MED17,PANX1,SMCO4,TAF1D,VSTM5"
TCGA.AG.A01W.01A	11	93056770	93071035	7	-0.2911	NEUTRAL	NA	1	CCDC67
TCGA.AG.A01W.01A	11	93072006	93109850	14	0.1654	NEUTRAL	NA	1	CCDC67
TCGA.AG.3909.01A	11	93090075	93462562	18	0.2439	NEUTRAL	NA	3	"CCDC67,CEP295,SMCO4"
TCGA.AG.A01W.01A	11	93110957	93174610	16	-0.3976	NEUTRAL	NA	1	CCDC67
TCGA.AA.3811	11	93170128	94908657	674	0.0968	NEUTRAL	NA	23	"AMOTL1,ANKRD49,C11orf54,C11orf97,CCDC67,CEP295,CWC15,ENDOD1,FUT4,GPR83,HEPHL1,IZUMO1R,KDM4D,KDM4E,MED17,MRE11A,PANX1,PIWIL4,SESN3,SMCO4,SRSF8,TAF1D,VSTM5"
TCGA.AG.A01W.01A	11	93180296	93440273	10	0.2057	NEUTRAL	NA	2	"CEP295,SMCO4"
TCGA.AA.A01C.01A	11	93212125	93528026	22	-0.4747	NEUTRAL	NA	5	"C11orf54,CEP295,MED17,SMCO4,TAF1D"
TCGA.AA.3967.01A	11	93429842	93534961	25	0.312	NEUTRAL	NA	4	"C11orf54,CEP295,MED17,TAF1D"
TCGA.AZ.4684.01A	11	93435585	93778792	38	-0.0904	NEUTRAL	NA	6	"C11orf54,CEP295,HEPHL1,MED17,TAF1D,VSTM5"
TCGA.AA.3509.01A	11	93435585	94178920	72	-0.0859	NEUTRAL	NA	10	"C11orf54,CEP295,GPR83,HEPHL1,IZUMO1R,MED17,MRE11A,PANX1,TAF1D,VSTM5"
TCGA.AG.A01W.01A	11	93443142	93455192	5	-0.1765	NEUTRAL	NA	1	CEP295
TCGA.AG.A01W.01A	11	93458763	102524383	365	0.1877	NEUTRAL	NA	41	"AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,BIRC2,BIRC3,C11orf54,C11orf70,C11orf97,CCDC82,CEP126,CEP295,CEP57,CNTN5,CWC15,ENDOD1,FAM76B,FUT4,GPR83,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,MED17,MMP20,MMP7,MRE11A,MTMR2,PANX1,PGR,PIWIL4,SESN3,SRSF8,TAF1D,TMEM123,TMEM133,TRPC6,VSTM5,YAP1"
TCGA.AG.3909.01A	11	93469276	93480486	6	-0.4177	NEUTRAL	NA	2	"C11orf54,TAF1D"
TCGA.AA.3862.01A	11	93471243	118242177	1423	-0.0837	NEUTRAL	NA	157	Too-Many
TCGA.AA.3861.01A	11	93471243	134257391	2633	-0.1353	NEUTRAL	NA	304	Too-Many
TCGA.AG.A00C.01A	11	93480486	93534961	14	0.3634	NEUTRAL	NA	2	"C11orf54,MED17"
TCGA.AA.A00D.01A	11	93480486	95555016	103	0.0314	NEUTRAL	NA	21	"AMOTL1,ANKRD49,C11orf54,C11orf97,CEP57,CWC15,ENDOD1,FAM76B,FUT4,GPR83,HEPHL1,IZUMO1R,KDM4D,KDM4E,MED17,MRE11A,PANX1,PIWIL4,SESN3,SRSF8,VSTM5"
TCGA.AG.3909.01A	11	93526847	93530653	4	-0.4294	NEUTRAL	NA	1	MED17
TCGA.AA.A01C.01A	11	93529554	111618612	769	0.158	NEUTRAL	NA	89	"AASDHPPT,ACAT1,ALKBH8,AMOTL1,ANGPTL5,ANKRD49,ARHGAP20,ARHGAP42,ATM,BIRC2,BIRC3,BTG4,C11orf53,C11orf65,C11orf70,C11orf87,C11orf88,C11orf97,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC82,CEP126,CEP57,CNTN5,COLCA1,COLCA2,CUL5,CWC15,CWF19L2,DCUN1D5,DDI1,DDX10,DYNC2H1,ELMOD1,ENDOD1,EXPH5,FAM76B,FDX1,FUT4,GPR83,GRIA4,GUCY1A2,HEPHL1,IZUMO1R,JRKL,KBTBD3,KDELC2,KDM4D,KDM4E,LAYN,MAML2,MED17,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MSANTD4,MTMR2,NPAT,PANX1,PDGFD,PGR,PIWIL4,POU2AF1,PPP2R1B,RAB39A,RDX,SESN3,SIK2,SLC35F2,SLN,SRSF8,TMEM123,TMEM133,TRPC6,VSTM5,YAP1,ZC3H12C"
TCGA.CK.5914.01A	11	93530653	94223948	58	0.258	NEUTRAL	NA	7	"GPR83,HEPHL1,IZUMO1R,MED17,MRE11A,PANX1,VSTM5"
TCGA.AA.3930.01A	11	93534961	102487491	302	-0.0432	NEUTRAL	NA	38	"AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,BIRC2,BIRC3,C11orf70,C11orf97,CCDC82,CEP126,CEP57,CNTN5,CWC15,ENDOD1,FAM76B,FUT4,GPR83,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,MED17,MMP20,MMP7,MRE11A,MTMR2,PANX1,PGR,PIWIL4,SESN3,SRSF8,TMEM123,TMEM133,TRPC6,VSTM5,YAP1"
TCGA.AG.3909.01A	11	93534961	102936973	336	0.1865	NEUTRAL	NA	46	"AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,BIRC2,BIRC3,C11orf70,C11orf97,CCDC82,CEP126,CEP57,CNTN5,CWC15,DCUN1D5,ENDOD1,FAM76B,FUT4,GPR83,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,MED17,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MTMR2,PANX1,PGR,PIWIL4,SESN3,SRSF8,TMEM123,TMEM133,TRPC6,VSTM5,YAP1"
TCGA.AA.3967.01A	11	93540637	99426872	160	-0.3734	NEUTRAL	NA	25	"AMOTL1,ANKRD49,C11orf97,CCDC82,CEP57,CNTN5,CWC15,ENDOD1,FAM76B,FUT4,GPR83,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,MED17,MRE11A,MTMR2,PANX1,PIWIL4,SESN3,SRSF8,VSTM5"
TCGA.AG.A00C.01A	11	93540637	108302423	650	-0.1224	NEUTRAL	NA	72	"AASDHPPT,ACAT1,ALKBH8,AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,ATM,BIRC2,BIRC3,C11orf65,C11orf70,C11orf97,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC82,CEP126,CEP57,CNTN5,CUL5,CWC15,CWF19L2,DCUN1D5,DDI1,DYNC2H1,ELMOD1,ENDOD1,FAM76B,FUT4,GPR83,GRIA4,GUCY1A2,HEPHL1,IZUMO1R,JRKL,KBTBD3,KDM4D,KDM4E,MAML2,MED17,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MSANTD4,MTMR2,NPAT,PANX1,PDGFD,PGR,PIWIL4,RAB39A,SESN3,SLC35F2,SLN,SRSF8,TMEM123,TMEM133,TRPC6,VSTM5,YAP1"
TCGA.AG.A01L.01A	11	93540637	120345217	1673	-0.1444	NEUTRAL	NA	196	Too-Many
TCGA.A6.5665	11	93704459	133548060	14789	-0.0207	NEUTRAL	NA	290	Too-Many
TCGA.AA.A01K.01A	11	93754483	118827007	1401	0.1046	NEUTRAL	NA	165	Too-Many
TCGA.AZ.4684.01A	11	93796657	94908632	103	0.3572	NEUTRAL	NA	16	"AMOTL1,ANKRD49,C11orf97,CWC15,ENDOD1,FUT4,GPR83,HEPHL1,IZUMO1R,KDM4D,KDM4E,MRE11A,PANX1,PIWIL4,SESN3,SRSF8"
TCGA.AA.3850	11	93961924	94441065	198	0.00755	NEUTRAL	NA	7	"ANKRD49,C11orf97,FUT4,GPR83,IZUMO1R,MRE11A,PIWIL4"
TCGA.D5.6898	11	93964451	94212497	79	-0.4068	NEUTRAL	NA	3	"GPR83,IZUMO1R,MRE11A"
TCGA.AA.A00N.01A	11	94113278	94163038	6	-0.3734	NEUTRAL	NA	2	"GPR83,MRE11A"
TCGA.D5.6898	11	94213154	100711481	2429	0.1636	NEUTRAL	NA	20	"AMOTL1,ANKRD49,ARHGAP42,C11orf97,CCDC82,CEP57,CNTN5,CWC15,ENDOD1,FAM76B,FUT4,JRKL,KDM4D,KDM4E,MAML2,MRE11A,MTMR2,PIWIL4,SESN3,SRSF8"
TCGA.CK.5914.01A	11	94316562	94603826	30	0.2412	NEUTRAL	NA	2	"AMOTL1,PIWIL4"
TCGA.AA.3850	11	94521572	95242216	285	0.00985	NEUTRAL	NA	7	"AMOTL1,CWC15,ENDOD1,KDM4D,KDM4E,SESN3,SRSF8"
TCGA.AA.A01Q.01A	11	94800382	111965512	547	0.0925	NEUTRAL	NA	86	"AASDHPPT,ACAT1,ALG9,ALKBH8,ANGPTL5,ARHGAP20,ARHGAP42,ATM,BIRC2,BIRC3,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf70,C11orf87,C11orf88,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC82,CEP126,CEP57,CNTN5,COLCA1,COLCA2,CRYAB,CUL5,CWF19L2,DCUN1D5,DDI1,DDX10,DIXDC1,DLAT,DYNC2H1,ELMOD1,ENDOD1,EXPH5,FAM76B,FDX1,FDXACB1,GRIA4,GUCY1A2,HSPB2,JRKL,KBTBD3,KDELC2,LAYN,MAML2,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MSANTD4,MTMR2,NPAT,PDGFD,PGR,PIH1D2,POU2AF1,PPP2R1B,RAB39A,RDX,SDHD,SESN3,SIK2,SLC35F2,SLN,SRSF8,TIMM8B,TMEM123,TMEM133,TRPC6,YAP1,ZC3H12C"
TCGA.CK.5914.01A	11	94823083	94906366	3	7.00E-04	NEUTRAL	NA	2	"ENDOD1,SESN3"
TCGA.AA.A00N.01A	11	94823083	95504673	12	0.038	NEUTRAL	NA	3	"ENDOD1,FAM76B,SESN3"
TCGA.A6.2681	11	94858418	125853558	11134	-0.4806	NEUTRAL	NA	248	Too-Many
TCGA.5M.AAT5	11	94879317	134944769	14941	6.00E-04	NEUTRAL	NA	285	Too-Many
TCGA.AA.3811	11	94944959	96239440	522	0.1124	NEUTRAL	NA	7	"CCDC82,CEP57,FAM76B,JRKL,MAML2,MTMR2,SESN3"
TCGA.AG.4021	11	95188530	134944769	14829	-3.00E-04	NEUTRAL	NA	284	Too-Many
TCGA.AA.3850	11	95259618	95374812	56	-0.24135	NEUTRAL	NA	0	None
TCGA.AA.3850	11	95407336	95565839	48	-0.14325	NEUTRAL	NA	2	"CEP57,FAM76B"
TCGA.DC.6158	11	95441806	107869215	4301	-0.2785	NEUTRAL	NA	49	"AASDHPPT,ALKBH8,ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC82,CEP126,CEP57,CNTN5,CWF19L2,DCUN1D5,DDI1,DYNC2H1,ELMOD1,FAM76B,GRIA4,GUCY1A2,JRKL,KBTBD3,MAML2,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MSANTD4,MTMR2,PDGFD,PGR,RAB39A,SLC35F2,SLN,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.CK.5914.01A	11	95504673	95512970	5	-0.0939	NEUTRAL	NA	1	FAM76B
TCGA.CK.4948.01B	11	95516262	134257391	2528	0.0613	NEUTRAL	NA	284	Too-Many
TCGA.CK.5914.01A	11	95522508	95555016	8	0.0387	NEUTRAL	NA	2	"CEP57,FAM76B"
TCGA.CK.5914.01A	11	95555645	96074497	24	0.3622	NEUTRAL	NA	3	"CEP57,MAML2,MTMR2"
TCGA.AA.A00D.01A	11	95555645	101761963	54	-0.205	NEUTRAL	NA	11	"ANGPTL5,ARHGAP42,CCDC82,CEP57,CNTN5,JRKL,MAML2,MTMR2,PGR,TMEM133,TRPC6"
TCGA.AA.3850	11	95583994	95780450	69	0.03425	NEUTRAL	NA	2	"MAML2,MTMR2"
TCGA.AG.3611.01A	11	95656982	96092110	6	-0.1886	NEUTRAL	NA	3	"CCDC82,MAML2,MTMR2"
TCGA.AA.3968	11	95756411	97625083	623	0.2973	NEUTRAL	NA	3	"CCDC82,JRKL,MAML2"
TCGA.AA.3850	11	95824617	96066651	129	0.06815	NEUTRAL	NA	1	MAML2
TCGA.AA.3811	11	96243188	100468734	1494	-0.3323	NEUTRAL	NA	1	CNTN5
TCGA.AA.3982	11	96562904	100449302	1453	-0.2672	NEUTRAL	NA	1	CNTN5
TCGA.AF.6655	11	96922958	99421039	899	-0.4954	NEUTRAL	NA	1	CNTN5
TCGA.AA.3968	11	97632968	134944769	13976	-0.4545	NEUTRAL	NA	278	Too-Many
TCGA.AF.6655	11	99423134	133303818	12603	-0.0217	NEUTRAL	NA	268	Too-Many
TCGA.EI.6508	11	99489013	102563299	1147	0.042	NEUTRAL	NA	15	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CEP126,CNTN5,MMP20,MMP27,MMP7,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AA.A010.01A	11	99690228	101340099	58	-0.3231	NEUTRAL	NA	5	"ARHGAP42,CNTN5,PGR,TMEM133,TRPC6"
TCGA.AG.A015.01A	11	99715536	102651171	134	-0.1666	NEUTRAL	NA	17	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CEP126,CNTN5,MMP10,MMP20,MMP27,MMP7,MMP8,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AA.A00F.01A	11	100095372	102199611	58	0.3614	NEUTRAL	NA	10	"ANGPTL5,ARHGAP42,BIRC3,C11orf70,CEP126,CNTN5,PGR,TMEM133,TRPC6,YAP1"
TCGA.DY.A1DC	11	100183384	104719592	1631	0.017	NEUTRAL	NA	25	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CEP126,CNTN5,DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,PDGFD,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AY.4070	11	100200416	133934412	12488	0.1321	NEUTRAL	NA	270	Too-Many
TCGA.AA.3864	11	100228728	104620210	1587	-0.0785	NEUTRAL	NA	25	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CEP126,CNTN5,DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,PDGFD,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AA.3989	11	100234648	104879627	1695	-0.0204	NEUTRAL	NA	27	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CASP12,CASP4,CASP5,CEP126,DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,PDGFD,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AA.3842	11	100242349	134944769	12971	0.0592	NEUTRAL	NA	277	Too-Many
TCGA.G4.6299	11	100314739	104412287	1528	0.0156	NEUTRAL	NA	24	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CEP126,DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,PDGFD,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AA.3850	11	100428942	101228511	353	-0.14545	NEUTRAL	NA	3	"ARHGAP42,PGR,TMEM133"
TCGA.AA.3982	11	100451994	104048401	1369	0.0158	NEUTRAL	NA	24	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CEP126,DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,PDGFD,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AA.3811	11	100470935	104013459	1354	-0.0802	NEUTRAL	NA	24	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CEP126,DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,PDGFD,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.D5.6898	11	100720107	134944769	12771	0.1521	NEUTRAL	NA	277	Too-Many
TCGA.AA.3870	11	101191165	134944769	12585	0.0242	NEUTRAL	NA	274	Too-Many
TCGA.AA.3850	11	101272875	101765042	193	-0.36535	NEUTRAL	NA	2	"ANGPTL5,TRPC6"
TCGA.AA.3967.01A	11	101323648	103019202	167	-0.2744	NEUTRAL	NA	19	"ANGPTL5,BIRC2,BIRC3,C11orf70,CEP126,DCUN1D5,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,TMEM123,TRPC6,YAP1"
TCGA.CK.5914.01A	11	101362246	101765561	5	0.0275	NEUTRAL	NA	2	"ANGPTL5,TRPC6"
TCGA.AA.A00N.01A	11	101761963	101984843	27	-0.0432	NEUTRAL	NA	4	"ANGPTL5,C11orf70,CEP126,YAP1"
TCGA.AA.A00D.01A	11	101765561	102272609	44	0.2552	NEUTRAL	NA	7	"ANGPTL5,BIRC2,BIRC3,C11orf70,CEP126,TMEM123,YAP1"
TCGA.AA.3850	11	101770359	102633133	259	0.14235	NEUTRAL	NA	11	"ANGPTL5,BIRC2,BIRC3,C11orf70,CEP126,MMP20,MMP27,MMP7,MMP8,TMEM123,YAP1"
TCGA.CK.5914.01A	11	101785967	101984843	19	-0.331	NEUTRAL	NA	4	"ANGPTL5,C11orf70,CEP126,YAP1"
TCGA.AA.A00F.01A	11	102233595	102593112	37	0.3743	NEUTRAL	NA	6	"BIRC2,MMP20,MMP27,MMP7,MMP8,TMEM123"
TCGA.CK.5914.01A	11	102323214	102477214	11	0.3222	NEUTRAL	NA	3	"MMP20,MMP7,TMEM123"
TCGA.AA.A00D.01A	11	102391475	103086423	77	-0.0715	NEUTRAL	NA	11	"DCUN1D5,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8"
TCGA.CK.5914.01A	11	102479636	102487491	4	-0.3596	NEUTRAL	NA	1	MMP20
TCGA.CK.5914.01A	11	102495876	102595433	19	0.3443	NEUTRAL	NA	3	"MMP20,MMP27,MMP8"
TCGA.AA.3930.01A	11	102495876	102643546	22	0.2773	NEUTRAL	NA	4	"MMP10,MMP20,MMP27,MMP8"
TCGA.AG.A01W.01A	11	102562134	102585761	12	0.0988	NEUTRAL	NA	2	"MMP27,MMP8"
TCGA.AA.A010.01A	11	102562460	102593112	17	-0.2147	NEUTRAL	NA	2	"MMP27,MMP8"
TCGA.AA.A00N.01A	11	102584041	102649892	17	-0.2635	NEUTRAL	NA	2	"MMP10,MMP8"
TCGA.AA.A02H.01A	11	102585235	102649892	15	-0.289	NEUTRAL	NA	2	"MMP10,MMP8"
TCGA.AH.6644	11	102596479	134205992	11735	-0.3877	NEUTRAL	NA	261	Too-Many
TCGA.AG.A01W.01A	11	102609937	104326816	43	0.227	NEUTRAL	NA	9	"DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP3,PDGFD"
TCGA.G4.6317	11	102619491	134944769	12121	-0.3225	NEUTRAL	NA	262	Too-Many
TCGA.AA.3850	11	102635237	104722190	751	-0.48415	NEUTRAL	NA	9	"DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP3,PDGFD"
TCGA.AA.3930.01A	11	102645878	116968822	867	-0.0316	NEUTRAL	NA	92	"AASDHPPT,ACAT1,ALG9,ALKBH8,ANKK1,APOA1,APOA4,APOA5,APOC3,ARHGAP20,ATM,BCO2,BTG4,BUD13,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf71,C11orf87,C11orf88,CADM1,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CLDN25,COLCA1,COLCA2,CRYAB,CUL5,CWF19L2,DCUN1D5,DDI1,DDX10,DIXDC1,DLAT,DRD2,DYNC2H1,ELMOD1,EXPH5,FDX1,FDXACB1,GRIA4,GUCY1A2,HSPB2,HTR3A,HTR3B,IL18,KBTBD3,KDELC2,LAYN,MMP1,MMP10,MMP12,MMP13,MMP3,MSANTD4,NCAM1,NNMT,NPAT,NXPE1,NXPE2,NXPE4,PDGFD,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RAB39A,RBM7,RDX,REXO2,SDHD,SIK2,SIK3,SLC35F2,SLN,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZC3H12C,ZPR1,ZW10"
TCGA.AA.A010.01A	11	102647295	102736516	25	-0.0064	NEUTRAL	NA	4	"MMP1,MMP10,MMP12,MMP3"
TCGA.CK.5914.01A	11	102649892	102712838	19	0.0223	NEUTRAL	NA	3	"MMP1,MMP10,MMP3"
TCGA.AA.A02H.01A	11	102651171	107506314	233	0.3429	NEUTRAL	NA	24	"AASDHPPT,ALKBH8,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CWF19L2,DCUN1D5,DDI1,DYNC2H1,ELMOD1,GRIA4,GUCY1A2,KBTBD3,MMP1,MMP10,MMP12,MMP13,MMP3,MSANTD4,PDGFD"
TCGA.AG.A015.01A	11	102661095	102668672	9	0.3628	NEUTRAL	NA	1	MMP1
TCGA.AA.A00F.01A	11	102661095	102936973	30	0.3615	NEUTRAL	NA	5	"DCUN1D5,MMP1,MMP12,MMP13,MMP3"
TCGA.AA.A02K.01A	11	102661096	102666147	6	-0.431	NEUTRAL	NA	1	MMP1
TCGA.AA.A02K.01A	11	102667349	114278129	753	-0.0859	NEUTRAL	NA	79	"AASDHPPT,ACAT1,ALG9,ALKBH8,ANKK1,ARHGAP20,ATM,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf71,C11orf87,C11orf88,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CLDN25,COLCA1,COLCA2,CRYAB,CUL5,CWF19L2,DCUN1D5,DDI1,DDX10,DIXDC1,DLAT,DRD2,DYNC2H1,ELMOD1,EXPH5,FDX1,FDXACB1,GRIA4,GUCY1A2,HSPB2,HTR3A,HTR3B,IL18,KBTBD3,KDELC2,LAYN,MMP1,MMP12,MMP13,MMP3,MSANTD4,NCAM1,NNMT,NPAT,PDGFD,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RAB39A,RBM7,RDX,SDHD,SIK2,SLC35F2,SLN,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZC3H12C,ZW10"
TCGA.CK.4952.01A	11	102679015	133762601	2202	-0.0315	NEUTRAL	NA	251	Too-Many
TCGA.AG.A015.01A	11	102706820	118404506	1065	-0.1779	NEUTRAL	NA	117	Too-Many
TCGA.CK.5914.01A	11	102745516	102936973	13	0.2521	NEUTRAL	NA	3	"DCUN1D5,MMP12,MMP13"
TCGA.AA.A010.01A	11	102814953	102826019	9	-0.4933	NEUTRAL	NA	1	MMP13
TCGA.AA.A010.01A	11	102984229	103031614	24	0.1455	NEUTRAL	NA	1	DYNC2H1
TCGA.AG.A02X.01A	11	102995782	103041568	20	0.2175	NEUTRAL	NA	1	DYNC2H1
TCGA.CK.5914.01A	11	102999590	108047673	245	0.2235	NEUTRAL	NA	24	"AASDHPPT,ACAT1,ALKBH8,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CUL5,CWF19L2,DDI1,DYNC2H1,ELMOD1,GRIA4,GUCY1A2,KBTBD3,MSANTD4,NPAT,PDGFD,RAB39A,SLC35F2,SLN"
TCGA.AG.3909.01A	11	103006210	111229486	382	0.2446	NEUTRAL	NA	38	"AASDHPPT,ACAT1,ALKBH8,ARHGAP20,ATM,C11orf53,C11orf65,C11orf87,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,COLCA1,COLCA2,CUL5,CWF19L2,DDI1,DDX10,DYNC2H1,ELMOD1,EXPH5,FDX1,GRIA4,GUCY1A2,KBTBD3,KDELC2,MSANTD4,NPAT,PDGFD,POU2AF1,RAB39A,RDX,SLC35F2,SLN,ZC3H12C"
TCGA.AA.A010.01A	11	103033707	103306617	57	-0.3412	NEUTRAL	NA	1	DYNC2H1
TCGA.AG.A02X.01A	11	103043794	104901015	86	-0.0858	NEUTRAL	NA	7	"CASP1,CASP12,CASP4,CASP5,DDI1,DYNC2H1,PDGFD"
TCGA.AA.3956	11	103388804	104063279	309	-0.1005	NEUTRAL	NA	2	"DDI1,PDGFD"
TCGA.AA.3522	11	103640046	109041201	1664	-0.3246	NEUTRAL	NA	28	"AASDHPPT,ACAT1,ALKBH8,ATM,C11orf65,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CUL5,CWF19L2,DDI1,DDX10,ELMOD1,EXPH5,GRIA4,GUCY1A2,KBTBD3,KDELC2,MSANTD4,NPAT,PDGFD,RAB39A,SLC35F2,SLN"
TCGA.AA.A00D.01A	11	103780371	104915924	38	-0.3318	NEUTRAL	NA	7	"CARD16,CASP1,CASP12,CASP4,CASP5,DDI1,PDGFD"
TCGA.AA.A00F.01A	11	103780371	106888428	77	0.2375	NEUTRAL	NA	14	"AASDHPPT,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,DDI1,GRIA4,GUCY1A2,KBTBD3,MSANTD4,PDGFD"
TCGA.AA.3967.01A	11	103780371	132307066	1965	-0.2242	NEUTRAL	NA	245	Too-Many
TCGA.AA.3811	11	104014517	107412127	1032	-0.4108	NEUTRAL	NA	15	"AASDHPPT,ALKBH8,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CWF19L2,GRIA4,GUCY1A2,KBTBD3,MSANTD4,PDGFD"
TCGA.AA.3982	11	104050258	107297789	979	-0.3335	NEUTRAL	NA	13	"AASDHPPT,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CWF19L2,GRIA4,GUCY1A2,KBTBD3,MSANTD4"
TCGA.AG.A01W.01A	11	104327797	105274169	36	-0.0093	NEUTRAL	NA	7	"CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5"
TCGA.AA.3864	11	104622610	104877926	100	-0.1983	NEUTRAL	NA	3	"CASP12,CASP4,CASP5"
TCGA.G4.6299	11	104681689	104866416	77	-0.0669	NEUTRAL	NA	3	"CASP12,CASP4,CASP5"
TCGA.DY.A1DC	11	104747316	134944769	11331	-0.0251	NEUTRAL	NA	253	Too-Many
TCGA.AA.A010.01A	11	104815443	105804426	48	-0.1639	NEUTRAL	NA	7	"CARD16,CARD17,CARD18,CASP1,CASP4,CASP5,GRIA4"
TCGA.G4.6299	11	104866460	105226270	118	0.357	NEUTRAL	NA	5	"CARD16,CARD17,CARD18,CASP1,CASP5"
TCGA.AA.3989	11	104885146	112806417	2402	0.0024	NEUTRAL	NA	55	"AASDHPPT,ACAT1,ALG9,ALKBH8,ARHGAP20,ATM,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf87,C11orf88,CARD16,CARD17,CARD18,CASP1,CASP5,COLCA1,COLCA2,CRYAB,CUL5,CWF19L2,DDX10,DIXDC1,DLAT,ELMOD1,EXPH5,FDX1,FDXACB1,GRIA4,GUCY1A2,HSPB2,IL18,KBTBD3,KDELC2,LAYN,MSANTD4,NPAT,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RAB39A,RDX,SDHD,SIK2,SLC35F2,SLN,TEX12,TIMM8B,ZC3H12C"
TCGA.AA.3864	11	104885146	134944769	11263	0.0662	NEUTRAL	NA	251	Too-Many
TCGA.AG.A02X.01A	11	104901844	107578533	81	0.2349	NEUTRAL	NA	13	"AASDHPPT,ALKBH8,CARD16,CARD17,CARD18,CASP1,CWF19L2,ELMOD1,GRIA4,GUCY1A2,KBTBD3,MSANTD4,SLN"
TCGA.AG.3611.01A	11	104904898	104972041	8	-0.4381	NEUTRAL	NA	3	"CARD16,CARD17,CASP1"
TCGA.AA.A00D.01A	11	104970048	107219636	45	-0.0636	NEUTRAL	NA	8	"AASDHPPT,CARD17,CARD18,CWF19L2,GRIA4,GUCY1A2,KBTBD3,MSANTD4"
TCGA.G4.6626	11	105005912	120878915	5510	-0.4126	NEUTRAL	NA	142	Too-Many
TCGA.G4.6299	11	105230059	109997853	1351	-0.0149	NEUTRAL	NA	21	"AASDHPPT,ACAT1,ALKBH8,ATM,C11orf65,C11orf87,CUL5,CWF19L2,DDX10,ELMOD1,EXPH5,GRIA4,GUCY1A2,KBTBD3,KDELC2,MSANTD4,NPAT,RAB39A,SLC35F2,SLN,ZC3H12C"
TCGA.AG.A01W.01A	11	105279699	107011525	64	0.3275	NEUTRAL	NA	5	"AASDHPPT,GRIA4,GUCY1A2,KBTBD3,MSANTD4"
TCGA.AA.A010.01A	11	105962003	107506314	47	-0.1724	NEUTRAL	NA	5	"AASDHPPT,ALKBH8,CWF19L2,ELMOD1,GUCY1A2"
TCGA.AA.3488	11	106235010	134944769	10928	-0.4663	NEUTRAL	NA	242	Too-Many
TCGA.DY.A1DG	11	106629570	134944769	10783	-0.0521	NEUTRAL	NA	242	Too-Many
TCGA.AG.3611.01A	11	106888428	109294402	144	-0.5113	NEUTRAL	NA	16	"ACAT1,ALKBH8,ATM,C11orf65,C11orf87,CUL5,CWF19L2,DDX10,ELMOD1,EXPH5,GUCY1A2,KDELC2,NPAT,RAB39A,SLC35F2,SLN"
TCGA.AG.A01W.01A	11	107023397	112786612	420	-0.2041	NEUTRAL	NA	45	"ACAT1,ALG9,ALKBH8,ARHGAP20,ATM,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf87,C11orf88,COLCA1,COLCA2,CRYAB,CUL5,CWF19L2,DDX10,DIXDC1,DLAT,ELMOD1,EXPH5,FDX1,FDXACB1,HSPB2,IL18,KDELC2,LAYN,NPAT,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RAB39A,RDX,SDHD,SIK2,SLC35F2,SLN,TEX12,TIMM8B,ZC3H12C"
TCGA.AA.3850	11	107045632	107287648	77	-0.09045	NEUTRAL	NA	1	CWF19L2
TCGA.AA.A00F.01A	11	107197585	111608125	215	-0.3131	NEUTRAL	NA	28	"ACAT1,ALKBH8,ARHGAP20,ATM,BTG4,C11orf53,C11orf65,C11orf87,C11orf88,COLCA1,COLCA2,CUL5,CWF19L2,DDX10,ELMOD1,EXPH5,FDX1,KDELC2,LAYN,NPAT,POU2AF1,PPP2R1B,RAB39A,RDX,SIK2,SLC35F2,SLN,ZC3H12C"
TCGA.AA.A00D.01A	11	107224240	107431443	16	-0.4473	NEUTRAL	NA	2	"ALKBH8,CWF19L2"
TCGA.AA.3982	11	107307087	107381764	32	0.1816	NEUTRAL	NA	2	"ALKBH8,CWF19L2"
TCGA.AA.3850	11	107307087	107459483	67	-0.18775	NEUTRAL	NA	2	"ALKBH8,CWF19L2"
TCGA.AA.3982	11	107399760	107416993	11	-0.1016	NEUTRAL	NA	1	ALKBH8
TCGA.AA.3811	11	107416611	109085821	463	0.1764	NEUTRAL	NA	13	"ACAT1,ALKBH8,ATM,C11orf65,CUL5,DDX10,ELMOD1,EXPH5,KDELC2,NPAT,RAB39A,SLC35F2,SLN"
TCGA.AA.3844	11	107416611	134944769	10514	-0.0302	NEUTRAL	NA	240	Too-Many
TCGA.AA.3982	11	107419340	108570493	289	0.3523	NEUTRAL	NA	13	"ACAT1,ALKBH8,ATM,C11orf65,CUL5,DDX10,ELMOD1,EXPH5,KDELC2,NPAT,RAB39A,SLC35F2,SLN"
TCGA.AA.3941	11	107434705	108546467	277	-0.1054	NEUTRAL	NA	13	"ACAT1,ALKBH8,ATM,C11orf65,CUL5,DDX10,ELMOD1,EXPH5,KDELC2,NPAT,RAB39A,SLC35F2,SLN"
TCGA.AG.3906.01A	11	107462442	108064618	65	0.18	NEUTRAL	NA	7	"ACAT1,CUL5,ELMOD1,NPAT,RAB39A,SLC35F2,SLN"
TCGA.AA.3850	11	107462894	108503671	254	0.34395	NEUTRAL	NA	11	"ACAT1,ATM,C11orf65,CUL5,ELMOD1,EXPH5,KDELC2,NPAT,RAB39A,SLC35F2,SLN"
TCGA.AA.3509.01A	11	107506314	107578533	8	-0.1865	NEUTRAL	NA	2	"ELMOD1,SLN"
TCGA.AZ.4684.01A	11	107506314	114273495	521	0.1087	NEUTRAL	NA	57	"ACAT1,ALG9,ANKK1,ARHGAP20,ATM,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf71,C11orf87,C11orf88,CLDN25,COLCA1,COLCA2,CRYAB,CUL5,DDX10,DIXDC1,DLAT,DRD2,ELMOD1,EXPH5,FDX1,FDXACB1,HSPB2,HTR3A,HTR3B,IL18,KDELC2,LAYN,NCAM1,NNMT,NPAT,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RAB39A,RBM7,RDX,SDHD,SIK2,SLC35F2,SLN,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZC3H12C,ZW10"
TCGA.AA.A010.01A	11	107518177	111612242	248	0.2588	NEUTRAL	NA	26	"ACAT1,ARHGAP20,ATM,BTG4,C11orf53,C11orf65,C11orf87,C11orf88,COLCA1,COLCA2,CUL5,DDX10,ELMOD1,EXPH5,FDX1,KDELC2,LAYN,NPAT,POU2AF1,PPP2R1B,RAB39A,RDX,SIK2,SLC35F2,SLN,ZC3H12C"
TCGA.AA.A02H.01A	11	107518177	134252583	1885	-0.1023	NEUTRAL	NA	239	Too-Many
TCGA.AG.A01J.01A	11	107518177	134257391	1905	-0.1462	NEUTRAL	NA	239	Too-Many
TCGA.A6.3808.01A	11	107520999	117278591	700	0.0786	NEUTRAL	NA	76	"ACAT1,ALG9,ANKK1,APOA1,APOA4,APOA5,APOC3,ARHGAP20,ATM,BACE1,BCO2,BTG4,BUD13,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf71,C11orf87,C11orf88,CADM1,CEP164,CLDN25,COLCA1,COLCA2,CRYAB,CUL5,DDX10,DIXDC1,DLAT,DRD2,ELMOD1,EXPH5,FDX1,FDXACB1,HSPB2,HTR3A,HTR3B,IL18,KDELC2,LAYN,NCAM1,NNMT,NPAT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RAB39A,RBM7,RDX,REXO2,RNF214,SDHD,SIDT2,SIK2,SIK3,SLC35F2,SLN,TAGLN,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZC3H12C,ZPR1,ZW10"
TCGA.AA.A00D.01A	11	107578533	111953657	254	0.0672	NEUTRAL	NA	35	"ACAT1,ALG9,ARHGAP20,ATM,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf87,C11orf88,COLCA1,COLCA2,CRYAB,CUL5,DDX10,DIXDC1,DLAT,EXPH5,FDX1,FDXACB1,HSPB2,KDELC2,LAYN,NPAT,PIH1D2,POU2AF1,PPP2R1B,RAB39A,RDX,SIK2,SLC35F2,SLN,ZC3H12C"
TCGA.AG.A02X.01A	11	107663302	123471118	1311	-0.3232	NEUTRAL	NA	144	Too-Many
TCGA.EI.7004	11	107858026	127701007	7351	-0.3609	NEUTRAL	NA	205	Too-Many
TCGA.AA.A00L.01A	11	107923355	108099865	30	0.3728	NEUTRAL	NA	4	"ACAT1,ATM,CUL5,NPAT"
TCGA.AA.A00N.01A	11	107965070	107992279	7	-0.2245	NEUTRAL	NA	2	"ACAT1,CUL5"
TCGA.DC.6158	11	107986343	134944769	10333	-0.3115	NEUTRAL	NA	234	Too-Many
TCGA.AA.A00N.01A	11	108013143	108029616	5	-0.2745	NEUTRAL	NA	2	"ACAT1,NPAT"
TCGA.AA.A00N.01A	11	108031575	110561211	152	0.3722	NEUTRAL	NA	11	"ARHGAP20,ATM,C11orf65,C11orf87,DDX10,EXPH5,FDX1,KDELC2,NPAT,RDX,ZC3H12C"
TCGA.AG.3906.01A	11	108067981	108256576	61	-0.0906	NEUTRAL	NA	3	"ATM,C11orf65,NPAT"
TCGA.AA.A00L.01A	11	108106385	110486199	122	0.0641	NEUTRAL	NA	10	"ARHGAP20,ATM,C11orf65,C11orf87,DDX10,EXPH5,FDX1,KDELC2,RDX,ZC3H12C"
TCGA.CK.5914.01A	11	108114668	108126930	9	0.0218	NEUTRAL	NA	1	ATM
TCGA.CK.5914.01A	11	108141746	108225470	40	0.2884	NEUTRAL	NA	1	ATM
TCGA.CK.5914.01A	11	108235772	111383608	98	-0.1632	NEUTRAL	NA	15	"ARHGAP20,ATM,BTG4,C11orf53,C11orf65,C11orf87,COLCA1,COLCA2,DDX10,EXPH5,FDX1,KDELC2,POU2AF1,RDX,ZC3H12C"
TCGA.AG.3906.01A	11	108263905	108412340	19	0.2689	NEUTRAL	NA	3	"C11orf65,EXPH5,KDELC2"
TCGA.AG.A00C.01A	11	108332159	108464098	16	0.2462	NEUTRAL	NA	3	"C11orf65,EXPH5,KDELC2"
TCGA.AA.A029.01A	11	108380914	108544176	9	-0.3102	NEUTRAL	NA	2	"DDX10,EXPH5"
TCGA.AG.3906.01A	11	108464098	111612725	100	-0.0853	NEUTRAL	NA	16	"ARHGAP20,BTG4,C11orf53,C11orf87,C11orf88,COLCA1,COLCA2,DDX10,EXPH5,FDX1,LAYN,POU2AF1,PPP2R1B,RDX,SIK2,ZC3H12C"
TCGA.F4.6460	11	108475979	134944769	10271	-0.344	NEUTRAL	NA	228	Too-Many
TCGA.AA.3850	11	108508776	108924250	131	-0.12105	NEUTRAL	NA	1	DDX10
TCGA.AG.A00C.01A	11	108535889	110561211	55	-0.1864	NEUTRAL	NA	6	"ARHGAP20,C11orf87,DDX10,FDX1,RDX,ZC3H12C"
TCGA.AA.3982	11	108571341	109322913	230	-0.0507	NEUTRAL	NA	2	"C11orf87,DDX10"
TCGA.AA.A029.01A	11	108577419	134257391	1731	-0.3171	NEUTRAL	NA	228	Too-Many
TCGA.AA.3509.01A	11	108593703	114314520	372	-0.0035	NEUTRAL	NA	47	"ALG9,ANKK1,ARHGAP20,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf71,C11orf87,C11orf88,CLDN25,COLCA1,COLCA2,CRYAB,DDX10,DIXDC1,DLAT,DRD2,FDX1,FDXACB1,HSPB2,HTR3A,HTR3B,IL18,LAYN,NCAM1,NNMT,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RBM7,RDX,REXO2,SDHD,SIK2,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZC3H12C,ZW10"
TCGA.DM.A1HB	11	108853663	134944769	9940	0.0192	NEUTRAL	NA	227	Too-Many
TCGA.AA.3522	11	109042095	110033645	263	-0.0104	NEUTRAL	NA	2	"C11orf87,ZC3H12C"
TCGA.AA.3811	11	109096367	109864037	183	-0.2713	NEUTRAL	NA	1	C11orf87
TCGA.AA.3956	11	109254578	134944769	10007	0.045	NEUTRAL	NA	227	Too-Many
TCGA.AG.A01Y	11	109255485	134944769	9993	-0.0655	NEUTRAL	NA	227	Too-Many
TCGA.AA.3982	11	109358597	109864037	120	-0.2271	NEUTRAL	NA	0	None
TCGA.AA.3867	11	109864037	132390234	8769	0.2029	NEUTRAL	NA	216	Too-Many
TCGA.AA.3982	11	109868835	110446225	191	0.3038	NEUTRAL	NA	3	"FDX1,RDX,ZC3H12C"
TCGA.AA.3811	11	109868835	123623702	5201	0.1621	NEUTRAL	NA	135	Too-Many
TCGA.AA.3850	11	109869252	110505720	205	0.17605	NEUTRAL	NA	4	"ARHGAP20,FDX1,RDX,ZC3H12C"
TCGA.AA.3941	11	109962431	112822794	962	-0.3561	NEUTRAL	NA	30	"ALG9,ARHGAP20,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf88,COLCA1,COLCA2,CRYAB,DIXDC1,DLAT,FDX1,FDXACB1,HSPB2,IL18,LAYN,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RDX,SDHD,SIK2,TEX12,TIMM8B,ZC3H12C"
TCGA.G4.6299	11	110002060	110091644	33	0.3341	NEUTRAL	NA	2	"RDX,ZC3H12C"
TCGA.AG.3611.01A	11	110007381	110118380	7	-0.1249	NEUTRAL	NA	2	"RDX,ZC3H12C"
TCGA.AA.3522	11	110035261	115867322	2147	-0.3449	NEUTRAL	NA	49	"ALG9,ANKK1,ARHGAP20,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf71,C11orf88,CADM1,CLDN25,COLCA1,COLCA2,CRYAB,DIXDC1,DLAT,DRD2,FDX1,FDXACB1,HSPB2,HTR3A,HTR3B,IL18,LAYN,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RBM7,RDX,REXO2,SDHD,SIK2,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZC3H12C,ZW10"
TCGA.G4.6299	11	110091773	110445650	111	-0.0746	NEUTRAL	NA	2	"FDX1,RDX"
TCGA.AG.3891.01A	11	110135465	110306521	4	0.3261	NEUTRAL	NA	2	"FDX1,RDX"
TCGA.AA.3558	11	110304602	131175324	8041	-0.0084	NEUTRAL	NA	212	Too-Many
TCGA.AG.3891.01A	11	110327591	111622831	64	-0.1516	NEUTRAL	NA	11	"ARHGAP20,BTG4,C11orf53,C11orf88,COLCA1,COLCA2,FDX1,LAYN,POU2AF1,PPP2R1B,SIK2"
TCGA.G4.6299	11	110446225	110706204	106	0.348	NEUTRAL	NA	1	ARHGAP20
TCGA.AA.3982	11	110449204	110639772	61	-0.3138	NEUTRAL	NA	1	ARHGAP20
TCGA.AA.A00L.01A	11	110494838	111384105	20	-0.4141	NEUTRAL	NA	6	"ARHGAP20,BTG4,C11orf53,COLCA1,COLCA2,POU2AF1"
TCGA.AA.3529	11	110504043	134944769	9672	0.0031	NEUTRAL	NA	223	Too-Many
TCGA.AA.3850	11	110642924	110995970	173	-0.04715	NEUTRAL	NA	0	None
TCGA.AA.3982	11	110642924	110995970	174	0.1295	NEUTRAL	NA	0	None
TCGA.G4.6299	11	110706939	110871106	65	-0.0468	NEUTRAL	NA	0	None
TCGA.G4.6299	11	110873411	111094595	109	0.3389	NEUTRAL	NA	0	None
TCGA.AA.3982	11	111036105	112826866	561	0.2835	NEUTRAL	NA	26	"ALG9,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf88,COLCA1,COLCA2,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2,IL18,LAYN,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,SDHD,SIK2,TEX12,TIMM8B"
TCGA.AA.3850	11	111039344	112806417	554	0.16345	NEUTRAL	NA	26	"ALG9,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf88,COLCA1,COLCA2,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2,IL18,LAYN,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,SDHD,SIK2,TEX12,TIMM8B"
TCGA.AY.A71X	11	111056614	134944769	9417	-0.4798	NEUTRAL	NA	222	Too-Many
TCGA.G4.6299	11	111096942	114219049	1132	-0.0602	NEUTRAL	NA	38	"ALG9,ANKK1,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf88,CLDN25,COLCA1,COLCA2,CRYAB,DIXDC1,DLAT,DRD2,FDXACB1,HSPB2,HTR3A,HTR3B,IL18,LAYN,NCAM1,NNMT,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,SDHD,SIK2,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZW10"
TCGA.AG.A00C.01A	11	111152076	111582906	35	0.2244	NEUTRAL	NA	8	"BTG4,C11orf53,C11orf88,COLCA1,COLCA2,LAYN,POU2AF1,SIK2"
TCGA.AG.A023.01A	11	111384105	117062930	385	-0.2605	NEUTRAL	NA	49	"ALG9,ANKK1,APOA1,APOA4,APOA5,APOC3,BCO2,BUD13,C11orf1,C11orf52,C11orf57,C11orf71,C11orf88,CADM1,CLDN25,CRYAB,DIXDC1,DLAT,DRD2,FDXACB1,HSPB2,HTR3A,HTR3B,IL18,LAYN,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PIH1D2,PLET1,PPP2R1B,PTS,RBM7,REXO2,SDHD,SIDT2,SIK2,SIK3,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZPR1,ZW10"
TCGA.AA.A00L.01A	11	111385492	118391472	538	0.0748	NEUTRAL	NA	72	"ALG9,AMICA1,ANKK1,APOA1,APOA4,APOA5,APOC3,ATP5L,BACE1,BCO2,BUD13,C11orf1,C11orf52,C11orf57,C11orf71,C11orf88,CADM1,CD3D,CD3E,CD3G,CEP164,CLDN25,CRYAB,DIXDC1,DLAT,DRD2,DSCAML1,FDXACB1,FXYD2,FXYD6,FXYD6-FXYD2,HSPB2,HTR3A,HTR3B,IL10RA,IL18,KMT2A,LAYN,MPZL2,MPZL3,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,PIH1D2,PLET1,PPP2R1B,PTS,RBM7,REXO2,RNF214,SCN2B,SCN4B,SDHD,SIDT2,SIK2,SIK3,TAGLN,TEX12,TIMM8B,TMPRSS13,TMPRSS4,TMPRSS5,TTC12,UBE4A,USP28,ZBTB16,ZPR1,ZW10"
TCGA.AG.A00Y.01A	11	111386165	134257391	1737	0.273	NEUTRAL	NA	217	Too-Many
TCGA.AG.3909.01A	11	111420295	111491018	7	-0.1498	NEUTRAL	NA	2	"LAYN,SIK2"
TCGA.AG.4009.01A	11	111425875	111618612	23	0.2545	NEUTRAL	NA	3	"LAYN,PPP2R1B,SIK2"
TCGA.AG.3909.01A	11	111558693	111608125	13	0.2876	NEUTRAL	NA	2	"PPP2R1B,SIK2"
TCGA.AG.A00C.01A	11	111590472	111594193	5	-0.438	NEUTRAL	NA	1	SIK2
TCGA.AG.A00C.01A	11	111597635	111921944	77	0.2788	NEUTRAL	NA	10	"ALG9,C11orf1,C11orf52,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2,PPP2R1B,SIK2"
TCGA.AG.3909.01A	11	111612242	111624130	7	-0.1277	NEUTRAL	NA	1	PPP2R1B
TCGA.AA.A00F.01A	11	111612242	111914122	35	-0.0115	NEUTRAL	NA	9	"ALG9,C11orf1,C11orf52,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2,PPP2R1B"
TCGA.AG.4009.01A	11	111622831	111636945	10	-0.307	NEUTRAL	NA	1	PPP2R1B
TCGA.AA.A00N.01A	11	111636945	111724337	10	0.3522	NEUTRAL	NA	2	"ALG9,PPP2R1B"
TCGA.AG.3909.01A	11	111636945	111724337	10	0.2553	NEUTRAL	NA	2	"ALG9,PPP2R1B"
TCGA.AA.A01C.01A	11	111636945	111731215	12	-0.033	NEUTRAL	NA	2	"ALG9,PPP2R1B"
TCGA.CK.5914.01A	11	111636945	111731215	12	0.0869	NEUTRAL	NA	2	"ALG9,PPP2R1B"
TCGA.AG.3891.01A	11	111636945	111781029	27	0.0567	NEUTRAL	NA	5	"ALG9,C11orf1,CRYAB,FDXACB1,PPP2R1B"
TCGA.AG.4009.01A	11	111657069	111866741	46	0.2157	NEUTRAL	NA	7	"ALG9,C11orf1,C11orf52,CRYAB,DIXDC1,FDXACB1,HSPB2"
TCGA.AF.3914.01A	11	111657069	116640790	290	0.0433	NEUTRAL	NA	37	"ALG9,ANKK1,BCO2,BUD13,C11orf1,C11orf52,C11orf57,C11orf71,CADM1,CLDN25,CRYAB,DIXDC1,DLAT,DRD2,FDXACB1,HSPB2,HTR3A,HTR3B,IL18,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PIH1D2,PLET1,PTS,RBM7,REXO2,SDHD,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZW10"
TCGA.AG.3906.01A	11	111706840	117089736	362	-0.0243	NEUTRAL	NA	47	"ALG9,ANKK1,APOA1,APOA4,APOA5,APOC3,BCO2,BUD13,C11orf1,C11orf52,C11orf57,C11orf71,CADM1,CLDN25,CRYAB,DIXDC1,DLAT,DRD2,FDXACB1,HSPB2,HTR3A,HTR3B,IL18,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,PIH1D2,PLET1,PTS,RBM7,REXO2,SDHD,SIDT2,SIK3,TAGLN,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZPR1,ZW10"
TCGA.AA.A02E.01A	11	111731215	113614476	166	-0.4686	NEUTRAL	NA	23	"ALG9,ANKK1,BCO2,C11orf1,C11orf52,C11orf57,CRYAB,DIXDC1,DLAT,DRD2,FDXACB1,HSPB2,IL18,NCAM1,PIH1D2,PLET1,PTS,SDHD,TEX12,TIMM8B,TMPRSS5,TTC12,ZW10"
TCGA.AA.A01C.01A	11	111735839	111747563	7	-0.4917	NEUTRAL	NA	2	"ALG9,FDXACB1"
TCGA.AA.A01C.01A	11	111753072	118626061	614	-0.0711	NEUTRAL	NA	73	"AMICA1,ANKK1,APOA1,APOA4,APOA5,APOC3,ARCN1,ATP5L,BACE1,BCO2,BUD13,C11orf1,C11orf52,C11orf57,C11orf71,CADM1,CD3D,CD3E,CD3G,CEP164,CLDN25,CRYAB,DDX6,DIXDC1,DLAT,DRD2,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,HSPB2,HTR3A,HTR3B,IFT46,IL10RA,IL18,KMT2A,MPZL2,MPZL3,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,PHLDB1,PIH1D2,PLET1,PTS,RBM7,REXO2,RNF214,SCN2B,SCN4B,SDHD,SIDT2,SIK3,TAGLN,TEX12,TIMM8B,TMEM25,TMPRSS13,TMPRSS4,TMPRSS5,TREH,TTC12,TTC36,UBE4A,USP28,ZBTB16,ZPR1,ZW10"
TCGA.AG.3891.01A	11	111794971	116797893	305	-0.0687	NEUTRAL	NA	38	"ANKK1,APOA1,APOA4,APOA5,APOC3,BCO2,BUD13,C11orf52,C11orf57,C11orf71,CADM1,CLDN25,DIXDC1,DLAT,DRD2,HTR3A,HTR3B,IL18,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PIH1D2,PLET1,PTS,RBM7,REXO2,SDHD,SIK3,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZPR1,ZW10"
TCGA.AG.4009.01A	11	111887365	111916539	12	-0.1757	NEUTRAL	NA	2	"DIXDC1,DLAT"
TCGA.AA.A00F.01A	11	111915807	111959539	20	-0.3242	NEUTRAL	NA	5	"C11orf57,DLAT,PIH1D2,SDHD,TIMM8B"
TCGA.AG.3909.01A	11	111916539	112020744	25	0.2884	NEUTRAL	NA	6	"C11orf57,DLAT,IL18,PIH1D2,SDHD,TIMM8B"
TCGA.AG.A00C.01A	11	111930629	111965512	20	-0.221	NEUTRAL	NA	5	"C11orf57,DLAT,PIH1D2,SDHD,TIMM8B"
TCGA.AG.A00H.01A	11	111946237	134257391	1596	-0.0581	NEUTRAL	NA	204	Too-Many
TCGA.AA.A00D.01A	11	111956000	111959539	4	-0.5045	NEUTRAL	NA	2	"SDHD,TIMM8B"
TCGA.AA.A00F.01A	11	111965512	113209427	33	0.0452	NEUTRAL	NA	8	"BCO2,IL18,NCAM1,PLET1,PTS,SDHD,TEX12,TTC12"
TCGA.AA.A00D.01A	11	111965512	113209984	37	0.3249	NEUTRAL	NA	8	"BCO2,IL18,NCAM1,PLET1,PTS,SDHD,TEX12,TTC12"
TCGA.AA.A00N.01A	11	112014317	112065325	13	-0.4645	NEUTRAL	NA	3	"BCO2,IL18,TEX12"
TCGA.AG.A00C.01A	11	112014317	112070374	14	0.1969	NEUTRAL	NA	3	"BCO2,IL18,TEX12"
TCGA.AG.3909.01A	11	112024224	112065325	10	-0.4771	NEUTRAL	NA	3	"BCO2,IL18,TEX12"
TCGA.AA.A01Q.01A	11	112039922	113236938	49	-0.2215	NEUTRAL	NA	6	"BCO2,NCAM1,PLET1,PTS,TEX12,TTC12"
TCGA.A6.5661	11	112071293	134944769	9142	-0.3158	NEUTRAL	NA	199	Too-Many
TCGA.AG.4009.01A	11	112099300	112126074	6	-0.4718	NEUTRAL	NA	2	"PLET1,PTS"
TCGA.AA.A00N.01A	11	112119474	112832272	5	-0.3904	NEUTRAL	NA	2	"NCAM1,PLET1"
TCGA.AG.3909.01A	11	112126074	112832272	2	-0.4972	NEUTRAL	NA	2	"NCAM1,PLET1"
TCGA.EI.6513	11	112199789	134944769	9134	-0.0318	NEUTRAL	NA	196	Too-Many
TCGA.AA.3819	11	112347110	134944769	9081	0.0136	NEUTRAL	NA	196	Too-Many
TCGA.A6.2672	11	112590519	134944769	8938	-0.2473	NEUTRAL	NA	196	Too-Many
TCGA.AA.3850	11	112809651	112838511	10	-0.26255	NEUTRAL	NA	1	NCAM1
TCGA.AA.3989	11	112809651	112847205	20	-0.4417	NEUTRAL	NA	1	NCAM1
TCGA.AA.3977	11	112847205	134944769	8830	0.0659	NEUTRAL	NA	196	Too-Many
TCGA.AA.3989	11	112851176	134944769	8855	0.054	NEUTRAL	NA	196	Too-Many
TCGA.AA.3850	11	112869053	114291258	608	0.24225	NEUTRAL	NA	14	"ANKK1,C11orf71,CLDN25,DRD2,HTR3A,HTR3B,NCAM1,NNMT,RBM7,TMPRSS5,TTC12,USP28,ZBTB16,ZW10"
TCGA.AA.3982	11	112878546	114630292	710	0.29	NEUTRAL	NA	18	"ANKK1,C11orf71,CLDN25,DRD2,HTR3A,HTR3B,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,RBM7,REXO2,TMPRSS5,TTC12,USP28,ZBTB16,ZW10"
TCGA.AA.3941	11	112937244	116035803	1239	-0.3027	NEUTRAL	NA	19	"ANKK1,C11orf71,CADM1,CLDN25,DRD2,HTR3A,HTR3B,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,RBM7,REXO2,TMPRSS5,TTC12,USP28,ZBTB16,ZW10"
TCGA.AZ.4614	11	112961665	134944769	8714	-0.0175	NEUTRAL	NA	196	Too-Many
TCGA.AG.A01W.01A	11	113064118	116167466	140	-0.2243	NEUTRAL	NA	19	"ANKK1,C11orf71,CADM1,CLDN25,DRD2,HTR3A,HTR3B,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,RBM7,REXO2,TMPRSS5,TTC12,USP28,ZBTB16,ZW10"
TCGA.AG.A00C.01A	11	113073087	113105707	13	-0.3094	NEUTRAL	NA	1	NCAM1
TCGA.AG.3909.01A	11	113073087	113133520	19	0.3197	NEUTRAL	NA	1	NCAM1
TCGA.CK.5914.01A	11	113102326	113803618	112	0.1306	NEUTRAL	NA	9	"ANKK1,CLDN25,DRD2,HTR3B,NCAM1,TMPRSS5,TTC12,USP28,ZW10"
TCGA.AA.A00N.01A	11	113106973	113145938	9	-0.2084	NEUTRAL	NA	1	NCAM1
TCGA.AG.A00C.01A	11	113106973	118770694	546	0.0069	NEUTRAL	NA	60	"AMICA1,ANKK1,APOA1,APOA4,APOA5,APOC3,ARCN1,ATP5L,BACE1,BCL9L,BUD13,C11orf71,CADM1,CD3D,CD3E,CD3G,CEP164,CLDN25,CXCR5,DDX6,DRD2,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,HTR3A,HTR3B,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,PHLDB1,RBM7,REXO2,RNF214,SCN2B,SCN4B,SIDT2,SIK3,TAGLN,TMEM25,TMPRSS13,TMPRSS4,TMPRSS5,TREH,TTC12,TTC36,UBE4A,USP28,ZBTB16,ZPR1,ZW10"
TCGA.AG.3909.01A	11	113140878	113200575	8	-0.4617	NEUTRAL	NA	2	"NCAM1,TTC12"
TCGA.AG.4009.01A	11	113186912	113230597	17	0.1179	NEUTRAL	NA	1	TTC12
TCGA.AA.A00Q.01A	11	113186912	114398496	111	-0.0941	NEUTRAL	NA	15	"ANKK1,C11orf71,CLDN25,DRD2,HTR3A,HTR3B,NNMT,NXPE1,RBM7,REXO2,TMPRSS5,TTC12,USP28,ZBTB16,ZW10"
TCGA.AA.A010.01A	11	113193973	113209984	8	-0.0647	NEUTRAL	NA	1	TTC12
TCGA.AG.3909.01A	11	113205626	113779990	85	0.2075	NEUTRAL	NA	8	"ANKK1,CLDN25,DRD2,HTR3B,TMPRSS5,TTC12,USP28,ZW10"
TCGA.AA.A00F.01A	11	113209984	116633227	125	-0.3352	NEUTRAL	NA	19	"ANKK1,BUD13,C11orf71,CADM1,CLDN25,DRD2,HTR3A,HTR3B,NNMT,NXPE1,NXPE2,NXPE4,RBM7,REXO2,TMPRSS5,TTC12,USP28,ZBTB16,ZW10"
TCGA.AA.A00N.01A	11	113211319	113239108	13	0.3656	NEUTRAL	NA	1	TTC12
TCGA.AA.A00D.01A	11	113211319	113618941	28	-0.1984	NEUTRAL	NA	5	"ANKK1,DRD2,TMPRSS5,TTC12,ZW10"
TCGA.AA.A01Q.01A	11	113269634	116649611	117	0.1213	NEUTRAL	NA	19	"ANKK1,BUD13,C11orf71,CADM1,CLDN25,DRD2,HTR3A,HTR3B,NNMT,NXPE1,NXPE2,NXPE4,RBM7,REXO2,TMPRSS5,USP28,ZBTB16,ZPR1,ZW10"
TCGA.AA.A01D.01A	11	113270258	118965656	548	-0.03	NEUTRAL	NA	68	"AMICA1,ANKK1,APOA1,APOA4,APOA5,APOC3,ARCN1,ATP5L,BACE1,BCL9L,BUD13,C11orf71,CADM1,CCDC84,CD3D,CD3E,CD3G,CEP164,CLDN25,CXCR5,DDX6,DRD2,DSCAML1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,H2AFX,HMBS,HTR3A,HTR3B,HYOU1,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,NNMT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,PHLDB1,RBM7,REXO2,RNF214,RPS25,SCN2B,SCN4B,SIDT2,SIK3,SLC37A4,TAGLN,TMEM25,TMPRSS13,TMPRSS4,TMPRSS5,TRAPPC4,TREH,TTC36,UBE4A,UPK2,USP28,VPS11,ZBTB16,ZPR1,ZW10"
TCGA.AG.4009.01A	11	113561512	113779990	49	0.3093	NEUTRAL	NA	5	"CLDN25,HTR3B,TMPRSS5,USP28,ZW10"
TCGA.AA.A010.01A	11	113604377	113816572	49	0.2961	NEUTRAL	NA	4	"CLDN25,HTR3B,USP28,ZW10"
TCGA.AA.A02E.01A	11	113618216	113779990	35	-0.0734	NEUTRAL	NA	4	"CLDN25,HTR3B,USP28,ZW10"
TCGA.AA.A00D.01A	11	113628347	113677197	14	0.2689	NEUTRAL	NA	3	"CLDN25,USP28,ZW10"
TCGA.AA.A00N.01A	11	113677197	113723175	17	0.1039	NEUTRAL	NA	1	USP28
TCGA.AA.A00D.01A	11	113679022	113802032	20	-0.0512	NEUTRAL	NA	2	"HTR3B,USP28"
TCGA.AA.A02E.01A	11	113813657	118266997	319	-0.0989	NEUTRAL	NA	41	"AMICA1,APOA1,APOA4,APOA5,APOC3,BACE1,BUD13,C11orf71,CADM1,CD3D,CD3E,CD3G,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,HTR3A,HTR3B,IL10RA,MPZL2,MPZL3,NNMT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,RBM7,REXO2,RNF214,SCN2B,SCN4B,SIDT2,SIK3,TAGLN,TMPRSS13,TMPRSS4,UBE4A,ZBTB16,ZPR1"
TCGA.CK.5914.01A	11	113934006	114271340	13	0.05	NEUTRAL	NA	4	"C11orf71,NNMT,RBM7,ZBTB16"
TCGA.AA.A00D.01A	11	113934006	116629753	46	-0.1177	NEUTRAL	NA	10	"BUD13,C11orf71,CADM1,NNMT,NXPE1,NXPE2,NXPE4,RBM7,REXO2,ZBTB16"
TCGA.AG.4009.01A	11	113934006	116640790	50	0.3023	NEUTRAL	NA	10	"BUD13,C11orf71,CADM1,NNMT,NXPE1,NXPE2,NXPE4,RBM7,REXO2,ZBTB16"
TCGA.AM.5820	11	113974925	114069754	71	0.3651	NEUTRAL	NA	1	ZBTB16
TCGA.AM.5820	11	114071813	115473080	526	0.0737	NEUTRAL	NA	9	"C11orf71,CADM1,NNMT,NXPE1,NXPE2,NXPE4,RBM7,REXO2,ZBTB16"
TCGA.G4.6299	11	114221114	115231040	380	0.2885	NEUTRAL	NA	7	"C11orf71,CADM1,NXPE1,NXPE2,NXPE4,RBM7,REXO2"
TCGA.AG.3909.01A	11	114272389	114310199	5	-0.2083	NEUTRAL	NA	2	"RBM7,REXO2"
TCGA.AA.A00N.01A	11	114272389	114320521	11	-0.2614	NEUTRAL	NA	2	"RBM7,REXO2"
TCGA.EI.6508	11	114291258	134944769	8244	-0.059	NEUTRAL	NA	182	Too-Many
TCGA.AA.3850	11	114298394	114843467	198	-0.12485	NEUTRAL	NA	4	"NXPE1,NXPE2,NXPE4,REXO2"
TCGA.AA.A02K.01A	11	114318478	118527342	409	-0.0506	NEUTRAL	NA	42	"AMICA1,APOA1,APOA4,APOA5,APOC3,ARCN1,ATP5L,BACE1,BUD13,CADM1,CD3D,CD3E,CD3G,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,PHLDB1,REXO2,RNF214,SCN2B,SCN4B,SIDT2,SIK3,TAGLN,TMEM25,TMPRSS13,TMPRSS4,TTC36,UBE4A,ZPR1"
TCGA.AA.A010.01A	11	114392648	116658146	49	-0.0466	NEUTRAL	NA	6	"BUD13,CADM1,NXPE1,NXPE2,NXPE4,ZPR1"
TCGA.AA.3509.01A	11	114452381	117074884	106	-0.0547	NEUTRAL	NA	13	"APOA1,APOA4,APOA5,APOC3,BUD13,CADM1,NXPE2,NXPE4,PAFAH1B2,SIDT2,SIK3,TAGLN,ZPR1"
TCGA.AZ.4684.01A	11	114452381	117074884	106	0.0667	NEUTRAL	NA	13	"APOA1,APOA4,APOA5,APOC3,BUD13,CADM1,NXPE2,NXPE4,PAFAH1B2,SIDT2,SIK3,TAGLN,ZPR1"
TCGA.AA.3982	11	114643238	115091118	191	0.2679	NEUTRAL	NA	1	CADM1
TCGA.AA.3850	11	114847579	115083347	97	0.26235	NEUTRAL	NA	1	CADM1
TCGA.AA.3680	11	114916449	134944769	8037	0.0113	NEUTRAL	NA	178	Too-Many
TCGA.AA.A00Q.01A	11	115047155	118769476	363	-0.1981	NEUTRAL	NA	42	"AMICA1,APOA1,APOA4,APOA5,APOC3,ARCN1,ATP5L,BACE1,BCL9L,BUD13,CADM1,CD3D,CD3E,CD3G,CEP164,CXCR5,DDX6,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,PAFAH1B2,PCSK7,PHLDB1,RNF214,SCN2B,SCN4B,SIDT2,SIK3,TAGLN,TMEM25,TMPRSS13,TMPRSS4,TREH,TTC36,UBE4A,ZPR1"
TCGA.AA.3850	11	115098435	115165312	31	0.16335	NEUTRAL	NA	1	CADM1
TCGA.AA.3982	11	115098435	115264991	54	0.0527	NEUTRAL	NA	1	CADM1
TCGA.AA.3966	11	115173264	134944769	7906	0.0539	NEUTRAL	NA	178	Too-Many
TCGA.G4.6299	11	115240580	117449496	901	-0.0943	NEUTRAL	NA	16	"APOA1,APOA4,APOA5,APOC3,BACE1,BUD13,CADM1,CEP164,DSCAML1,PAFAH1B2,PCSK7,RNF214,SIDT2,SIK3,TAGLN,ZPR1"
TCGA.AA.3982	11	115271198	116158334	368	0.2772	NEUTRAL	NA	1	CADM1
TCGA.AA.3850	11	115339614	115845450	205	0.20625	NEUTRAL	NA	1	CADM1
TCGA.AM.5820	11	115480731	116511027	487	0.1562	NEUTRAL	NA	0	None
TCGA.AA.3522	11	115867671	117571031	719	-0.0097	NEUTRAL	NA	15	"APOA1,APOA4,APOA5,APOC3,BACE1,BUD13,CEP164,DSCAML1,PAFAH1B2,PCSK7,RNF214,SIDT2,SIK3,TAGLN,ZPR1"
TCGA.AA.3850	11	115904368	120869569	1919	0.33425	NEUTRAL	NA	72	"ABCG4,AMICA1,APOA1,APOA4,APOA5,APOC3,ARCN1,ARHGEF12,ATP5L,BACE1,BCL9L,BUD13,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CD3D,CD3E,CD3G,CEP164,CXCR5,DDX6,DPAGT1,DSCAML1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,GRIK4,H2AFX,HINFP,HMBS,HYOU1,IFT46,IL10RA,KMT2A,MCAM,MFRP,MPZL2,MPZL3,NLRX1,OAF,PAFAH1B2,PCSK7,PDZD3,PHLDB1,POU2F3,PVRL1,RNF214,RNF26,RPS25,SCN2B,SCN4B,SIDT2,SIK3,SLC37A4,TAGLN,THY1,TMEM136,TMEM25,TMPRSS13,TMPRSS4,TRAPPC4,TREH,TRIM29,TTC36,UBE4A,UPK2,USP2,VPS11,ZPR1"
TCGA.AA.3941	11	116035923	120869569	1849	-0.0133	NEUTRAL	NA	72	"ABCG4,AMICA1,APOA1,APOA4,APOA5,APOC3,ARCN1,ARHGEF12,ATP5L,BACE1,BCL9L,BUD13,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CD3D,CD3E,CD3G,CEP164,CXCR5,DDX6,DPAGT1,DSCAML1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,GRIK4,H2AFX,HINFP,HMBS,HYOU1,IFT46,IL10RA,KMT2A,MCAM,MFRP,MPZL2,MPZL3,NLRX1,OAF,PAFAH1B2,PCSK7,PDZD3,PHLDB1,POU2F3,PVRL1,RNF214,RNF26,RPS25,SCN2B,SCN4B,SIDT2,SIK3,SLC37A4,TAGLN,THY1,TMEM136,TMEM25,TMPRSS13,TMPRSS4,TRAPPC4,TREH,TRIM29,TTC36,UBE4A,UPK2,USP2,VPS11,ZPR1"
TCGA.AG.A01W.01A	11	116206449	116239548	13	-0.3974	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	116246194	116474042	13	0.0118	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	116528318	118565300	477	-0.4169	NEUTRAL	NA	38	"AMICA1,APOA1,APOA4,APOA5,APOC3,ARCN1,ATP5L,BACE1,BUD13,CD3D,CD3E,CD3G,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,PAFAH1B2,PCSK7,PHLDB1,RNF214,SCN2B,SCN4B,SIDT2,SIK3,TAGLN,TMEM25,TMPRSS13,TMPRSS4,TREH,TTC36,UBE4A,ZPR1"
TCGA.DT.5265	11	116575554	117331278	228	0.0872	NEUTRAL	NA	15	"APOA1,APOA4,APOA5,APOC3,BACE1,BUD13,CEP164,DSCAML1,PAFAH1B2,PCSK7,RNF214,SIDT2,SIK3,TAGLN,ZPR1"
TCGA.AM.5820	11	116599825	116684766	37	-0.0825	NEUTRAL	NA	3	"APOA5,BUD13,ZPR1"
TCGA.AG.3909.01A	11	116627806	116633227	6	-0.305	NEUTRAL	NA	1	BUD13
TCGA.CK.5914.01A	11	116627806	116643497	9	-0.2349	NEUTRAL	NA	1	BUD13
TCGA.AA.A00D.01A	11	116631404	116658146	17	0.2435	NEUTRAL	NA	2	"BUD13,ZPR1"
TCGA.AA.A00F.01A	11	116636034	116658498	16	0.2016	NEUTRAL	NA	2	"BUD13,ZPR1"
TCGA.AG.4009.01A	11	116649611	116658146	13	-0.3452	NEUTRAL	NA	1	ZPR1
TCGA.AA.A01Q.01A	11	116658146	116691543	5	0.3057	NEUTRAL	NA	3	"APOA4,APOA5,ZPR1"
TCGA.CK.5914.01A	11	116658498	116717071	12	-0.3001	NEUTRAL	NA	6	"APOA1,APOA4,APOA5,APOC3,SIK3,ZPR1"
TCGA.AA.A00D.01A	11	116658498	116734367	20	-0.1543	NEUTRAL	NA	6	"APOA1,APOA4,APOA5,APOC3,SIK3,ZPR1"
TCGA.AF.3914.01A	11	116660816	117098880	72	0.0466	NEUTRAL	NA	9	"APOA1,APOA4,APOA5,APOC3,PAFAH1B2,PCSK7,SIDT2,SIK3,TAGLN"
TCGA.AA.A00F.01A	11	116660816	118842586	339	-0.2584	NEUTRAL	NA	41	"AMICA1,APOA1,APOA4,APOA5,APOC3,ARCN1,ATP5L,BACE1,BCL9L,CD3D,CD3E,CD3G,CEP164,CXCR5,DDX6,DSCAML1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,PAFAH1B2,PCSK7,PHLDB1,RNF214,SCN2B,SCN4B,SIDT2,SIK3,TAGLN,TMEM25,TMPRSS13,TMPRSS4,TREH,TTC36,UBE4A,UPK2"
TCGA.AA.A01Q.01A	11	116693333	116718145	9	-0.2045	NEUTRAL	NA	4	"APOA1,APOA4,APOC3,SIK3"
TCGA.AM.5820	11	116711973	116758453	19	0.1192	NEUTRAL	NA	1	SIK3
TCGA.AA.A01Q.01A	11	116719788	117052495	28	0.3513	NEUTRAL	NA	3	"PAFAH1B2,SIDT2,SIK3"
TCGA.AM.5820	11	116758692	117044602	65	-0.2463	NEUTRAL	NA	2	"PAFAH1B2,SIK3"
TCGA.AA.A00D.01A	11	116764603	116827615	6	-0.0272	NEUTRAL	NA	1	SIK3
TCGA.F4.6461	11	116766898	134944769	7189	-0.0208	NEUTRAL	NA	171	Too-Many
TCGA.AA.A010.01A	11	116767882	117038110	12	-0.1792	NEUTRAL	NA	2	"PAFAH1B2,SIK3"
TCGA.AG.3891.01A	11	116824720	117104940	45	0.2505	NEUTRAL	NA	6	"PAFAH1B2,PCSK7,RNF214,SIDT2,SIK3,TAGLN"
TCGA.CK.5914.01A	11	116827615	117100111	44	-0.2887	NEUTRAL	NA	5	"PAFAH1B2,PCSK7,SIDT2,SIK3,TAGLN"
TCGA.AA.3544	11	116989967	117571031	213	0.0012	NEUTRAL	NA	8	"BACE1,CEP164,DSCAML1,PAFAH1B2,PCSK7,RNF214,SIDT2,TAGLN"
TCGA.AA.3930.01A	11	117023116	118527341	317	0.2734	NEUTRAL	NA	30	"AMICA1,ARCN1,ATP5L,BACE1,CD3D,CD3E,CD3G,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,PAFAH1B2,PCSK7,PHLDB1,RNF214,SCN2B,SCN4B,SIDT2,TAGLN,TMEM25,TMPRSS13,TMPRSS4,TTC36,UBE4A"
TCGA.AA.A01Q.01A	11	117053198	117060633	8	-0.1304	NEUTRAL	NA	1	SIDT2
TCGA.AA.A00D.01A	11	117056814	117864662	116	-0.0841	NEUTRAL	NA	12	"BACE1,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IL10RA,PCSK7,RNF214,SIDT2,TAGLN,TMPRSS13"
TCGA.AA.A02W.01A	11	117063818	134257391	1323	0.0587	NEUTRAL	NA	169	Too-Many
TCGA.AG.A023.01A	11	117066471	117267765	64	-0.2113	NEUTRAL	NA	6	"BACE1,CEP164,PCSK7,RNF214,SIDT2,TAGLN"
TCGA.AA.3815.01A	11	117066471	126133760	1054	0.0298	NEUTRAL	NA	134	Too-Many
TCGA.AA.A010.01A	11	117073981	117079563	8	-0.1494	NEUTRAL	NA	2	"PCSK7,TAGLN"
TCGA.AA.A01Q.01A	11	117076661	117262884	41	-0.0307	NEUTRAL	NA	4	"BACE1,CEP164,PCSK7,RNF214"
TCGA.AG.4009.01A	11	117077359	117089736	5	-0.076	NEUTRAL	NA	1	PCSK7
TCGA.AZ.4684.01A	11	117089140	117109365	12	0.0742	NEUTRAL	NA	2	"PCSK7,RNF214"
TCGA.AA.3509.01A	11	117089140	120918243	602	-0.1036	NEUTRAL	NA	63	"ABCG4,AMICA1,ARCN1,ARHGEF12,ATP5L,BACE1,BCL9L,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CD3D,CD3E,CD3G,CEP164,CXCR5,DDX6,DPAGT1,DSCAML1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,GRIK4,H2AFX,HINFP,HMBS,HYOU1,IFT46,IL10RA,KMT2A,MCAM,MFRP,MPZL2,MPZL3,NLRX1,OAF,PCSK7,PDZD3,PHLDB1,POU2F3,PVRL1,RNF214,RNF26,RPS25,SCN2B,SCN4B,SLC37A4,TBCEL,THY1,TMEM136,TMEM25,TMPRSS13,TMPRSS4,TRAPPC4,TREH,TRIM29,TTC36,UBE4A,UPK2,USP2,VPS11"
TCGA.AM.5820	11	117102306	117889447	325	0.2009	NEUTRAL	NA	10	"BACE1,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IL10RA,PCSK7,RNF214,TMPRSS13"
TCGA.AG.4009.01A	11	117150586	117214840	19	0.2606	NEUTRAL	NA	3	"BACE1,CEP164,RNF214"
TCGA.AA.A010.01A	11	117150586	117234092	23	-0.2308	NEUTRAL	NA	3	"BACE1,CEP164,RNF214"
TCGA.AG.3906.01A	11	117150586	117257907	29	0.1553	NEUTRAL	NA	3	"BACE1,CEP164,RNF214"
TCGA.AF.3914.01A	11	117150586	117299026	46	-0.0397	NEUTRAL	NA	4	"BACE1,CEP164,DSCAML1,RNF214"
TCGA.AG.3891.01A	11	117150586	118827877	300	0.132	NEUTRAL	NA	31	"AMICA1,ARCN1,ATP5L,BACE1,BCL9L,CD3D,CD3E,CD3G,CEP164,CXCR5,DDX6,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,PHLDB1,RNF214,SCN2B,SCN4B,TMEM25,TMPRSS13,TMPRSS4,TREH,TTC36,UBE4A,UPK2"
TCGA.AZ.4684.01A	11	117152319	118550205	281	0.0452	NEUTRAL	NA	27	"AMICA1,ARCN1,ATP5L,BACE1,CD3D,CD3E,CD3G,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,PHLDB1,RNF214,SCN2B,SCN4B,TMEM25,TMPRSS13,TMPRSS4,TREH,TTC36,UBE4A"
TCGA.AG.3906.01A	11	117261444	117860106	68	-0.0954	NEUTRAL	NA	7	"CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IL10RA,TMPRSS13"
TCGA.AA.A01Q.01A	11	117263175	117710432	50	-0.3755	NEUTRAL	NA	5	"CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2"
TCGA.CK.5914.01A	11	117265581	117691303	43	0.0445	NEUTRAL	NA	4	"CEP164,DSCAML1,FXYD2,FXYD6-FXYD2"
TCGA.AG.3909.01A	11	117282474	117691303	34	7.00E-04	NEUTRAL	NA	4	"CEP164,DSCAML1,FXYD2,FXYD6-FXYD2"
TCGA.AG.A023.01A	11	117282474	118889459	256	-0.1191	NEUTRAL	NA	33	"AMICA1,ARCN1,ATP5L,BCL9L,CCDC84,CD3D,CD3E,CD3G,CEP164,CXCR5,DDX6,DSCAML1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,IFT46,IL10RA,KMT2A,MPZL2,MPZL3,PHLDB1,RPS25,SCN2B,SCN4B,TMEM25,TMPRSS13,TMPRSS4,TRAPPC4,TREH,TTC36,UBE4A,UPK2"
TCGA.AF.3914.01A	11	117306320	118186163	104	0.0728	NEUTRAL	NA	13	"AMICA1,CD3E,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IL10RA,MPZL2,MPZL3,SCN2B,SCN4B,TMPRSS13,TMPRSS4"
TCGA.DT.5265	11	117347399	117536135	94	-0.0053	NEUTRAL	NA	1	DSCAML1
TCGA.G4.6299	11	117451093	117646329	92	0.2131	NEUTRAL	NA	1	DSCAML1
TCGA.AA.3522	11	117585217	119798817	709	0.0192	NEUTRAL	NA	52	"ABCG4,AMICA1,ARCN1,ATP5L,BCL9L,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CD3D,CD3E,CD3G,CXCR5,DDX6,DPAGT1,DSCAML1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,H2AFX,HINFP,HMBS,HYOU1,IFT46,IL10RA,KMT2A,MCAM,MFRP,MPZL2,MPZL3,NLRX1,PDZD3,PHLDB1,PVRL1,RNF26,RPS25,SCN2B,SCN4B,SLC37A4,THY1,TMEM25,TMPRSS13,TMPRSS4,TRAPPC4,TREH,TTC36,UBE4A,UPK2,USP2,VPS11"
TCGA.AA.3544	11	117585217	121837453	1577	0.03	NEUTRAL	NA	62	"ABCG4,AMICA1,ARCN1,ARHGEF12,ATP5L,BCL9L,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CD3D,CD3E,CD3G,CXCR5,DDX6,DPAGT1,DSCAML1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,GRIK4,H2AFX,HINFP,HMBS,HYOU1,IFT46,IL10RA,KMT2A,MCAM,MFRP,MPZL2,MPZL3,NLRX1,OAF,PDZD3,PHLDB1,POU2F3,PVRL1,RNF26,RPS25,SC5D,SCN2B,SCN4B,SLC37A4,SORL1,TBCEL,TECTA,THY1,TMEM136,TMEM25,TMPRSS13,TMPRSS4,TRAPPC4,TREH,TRIM29,TTC36,UBE4A,UPK2,USP2,VPS11"
TCGA.G4.6299	11	117646353	125114540	2825	-0.0748	NEUTRAL	NA	111	Too-Many
TCGA.AA.A010.01A	11	117647467	117713383	12	-0.0245	NEUTRAL	NA	4	"DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2"
TCGA.DM.A28E	11	117661099	134944769	6883	-0.0095	NEUTRAL	NA	163	Too-Many
TCGA.AA.A01Q.01A	11	117710961	118007688	28	0.1683	NEUTRAL	NA	6	"FXYD6,FXYD6-FXYD2,IL10RA,SCN4B,TMPRSS13,TMPRSS4"
TCGA.AG.3909.01A	11	117859060	117869433	6	-0.4017	NEUTRAL	NA	1	IL10RA
TCGA.AG.3906.01A	11	117863909	118175595	47	0.1534	NEUTRAL	NA	8	"AMICA1,CD3E,IL10RA,MPZL2,MPZL3,SCN2B,SCN4B,TMPRSS4"
TCGA.AA.A00D.01A	11	117866254	118133116	41	-0.3543	NEUTRAL	NA	7	"AMICA1,IL10RA,MPZL2,MPZL3,SCN2B,SCN4B,TMPRSS4"
TCGA.AM.5820	11	117891383	117909100	19	-0.3496	NEUTRAL	NA	0	None
TCGA.AM.5820	11	117909798	118001606	70	0.0979	NEUTRAL	NA	1	TMPRSS4
TCGA.AA.A010.01A	11	117978437	118047022	17	0.1943	NEUTRAL	NA	3	"SCN2B,SCN4B,TMPRSS4"
TCGA.AG.4009.01A	11	117988526	118015724	5	0.0346	NEUTRAL	NA	2	"SCN4B,TMPRSS4"
TCGA.AG.3909.01A	11	118007688	118037565	5	-0.4504	NEUTRAL	NA	2	"SCN2B,SCN4B"
TCGA.AA.A01Q.01A	11	118037565	118468395	129	0.233	NEUTRAL	NA	14	"AMICA1,ARCN1,ATP5L,CD3D,CD3E,CD3G,IFT46,KMT2A,MPZL2,MPZL3,SCN2B,TMEM25,TTC36,UBE4A"
TCGA.AM.5820	11	118056721	118459268	89	-0.1703	NEUTRAL	NA	13	"AMICA1,ARCN1,ATP5L,CD3D,CD3E,CD3G,IFT46,KMT2A,MPZL2,MPZL3,TMEM25,TTC36,UBE4A"
TCGA.AA.A010.01A	11	118074126	118134738	17	0.1436	NEUTRAL	NA	3	"AMICA1,MPZL2,MPZL3"
TCGA.F5.6465	11	118080132	134944769	6668	-0.0327	NEUTRAL	NA	154	Too-Many
TCGA.AA.A00D.01A	11	118133626	118770694	130	0.1058	NEUTRAL	NA	16	"ARCN1,ATP5L,BCL9L,CD3D,CD3E,CD3G,CXCR5,DDX6,IFT46,KMT2A,MPZL2,PHLDB1,TMEM25,TREH,TTC36,UBE4A"
TCGA.AG.4009.01A	11	118175595	118186163	8	0.1002	NEUTRAL	NA	1	CD3E
TCGA.CK.5914.01A	11	118177912	118352454	47	0.0321	NEUTRAL	NA	6	"ATP5L,CD3D,CD3E,CD3G,KMT2A,UBE4A"
TCGA.AG.4009.01A	11	118209808	118221249	9	-0.3003	NEUTRAL	NA	2	"CD3D,CD3G"
TCGA.AG.3909.01A	11	118209808	118352454	38	0.1985	NEUTRAL	NA	5	"ATP5L,CD3D,CD3G,KMT2A,UBE4A"
TCGA.A6.3808.01A	11	118210096	118882594	163	-0.1765	NEUTRAL	NA	17	"ARCN1,ATP5L,BCL9L,CCDC84,CD3D,CD3G,CXCR5,DDX6,FOXR1,IFT46,KMT2A,PHLDB1,TMEM25,TREH,TTC36,UBE4A,UPK2"
TCGA.AF.3914.01A	11	118215097	118770694	136	0.1237	NEUTRAL	NA	13	"ARCN1,ATP5L,BCL9L,CD3G,CXCR5,DDX6,IFT46,KMT2A,PHLDB1,TMEM25,TREH,TTC36,UBE4A"
TCGA.AG.3906.01A	11	118220417	118344365	28	0.0878	NEUTRAL	NA	4	"ATP5L,CD3G,KMT2A,UBE4A"
TCGA.AG.4009.01A	11	118222263	118382603	56	0.2897	NEUTRAL	NA	4	"ATP5L,CD3G,KMT2A,UBE4A"
TCGA.AA.A010.01A	11	118235755	118898886	171	0.0755	NEUTRAL	NA	18	"ARCN1,ATP5L,BCL9L,CCDC84,CXCR5,DDX6,FOXR1,IFT46,KMT2A,PHLDB1,RPS25,SLC37A4,TMEM25,TRAPPC4,TREH,TTC36,UBE4A,UPK2"
TCGA.AA.3862.01A	11	118243175	119027001	234	0.2853	NEUTRAL	NA	26	"ABCG4,ARCN1,ATP5L,BCL9L,C2CD2L,CCDC84,CXCR5,DDX6,DPAGT1,FOXR1,H2AFX,HINFP,HMBS,HYOU1,IFT46,KMT2A,PHLDB1,RPS25,SLC37A4,TMEM25,TRAPPC4,TREH,TTC36,UBE4A,UPK2,VPS11"
TCGA.AG.3906.01A	11	118347480	118366929	17	-0.2718	NEUTRAL	NA	1	KMT2A
TCGA.AG.3909.01A	11	118353072	118391472	29	-0.0769	NEUTRAL	NA	1	KMT2A
TCGA.AG.3906.01A	11	118368599	118398172	19	0.1351	NEUTRAL	NA	1	KMT2A
TCGA.CK.5914.01A	11	118369971	118502602	51	-0.3547	NEUTRAL	NA	6	"ARCN1,IFT46,KMT2A,PHLDB1,TMEM25,TTC36"
TCGA.AG.4009.01A	11	118390290	118416748	15	-0.0727	NEUTRAL	NA	4	"IFT46,KMT2A,TMEM25,TTC36"
TCGA.AA.A00L.01A	11	118391974	118404506	9	-0.2789	NEUTRAL	NA	3	"KMT2A,TMEM25,TTC36"
TCGA.AG.3906.01A	11	118399307	118403595	4	-0.4146	NEUTRAL	NA	2	"TMEM25,TTC36"
TCGA.AG.3906.01A	11	118404095	118528962	40	0.1705	NEUTRAL	NA	5	"ARCN1,IFT46,PHLDB1,TMEM25,TREH"
TCGA.AG.3909.01A	11	118415580	118430432	11	-0.0364	NEUTRAL	NA	2	"IFT46,TMEM25"
TCGA.AA.A00L.01A	11	118415580	118754588	40	0.3647	NEUTRAL	NA	7	"ARCN1,CXCR5,DDX6,IFT46,PHLDB1,TMEM25,TREH"
TCGA.AG.A015.01A	11	118416449	118769082	57	-0.1973	NEUTRAL	NA	8	"ARCN1,BCL9L,CXCR5,DDX6,IFT46,PHLDB1,TMEM25,TREH"
TCGA.AG.4009.01A	11	118422434	118486709	19	0.3069	NEUTRAL	NA	3	"ARCN1,IFT46,PHLDB1"
TCGA.AA.A01Q.01A	11	118471288	118527341	18	-0.3025	NEUTRAL	NA	2	"ARCN1,PHLDB1"
TCGA.AM.5820	11	118477366	120227441	575	0.2597	NEUTRAL	NA	35	"ABCG4,ARHGEF12,BCL9L,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CXCR5,DDX6,DPAGT1,FOXR1,H2AFX,HINFP,HMBS,HYOU1,MCAM,MFRP,NLRX1,OAF,PDZD3,PHLDB1,POU2F3,PVRL1,RNF26,RPS25,SLC37A4,THY1,TMEM136,TRAPPC4,TREH,TRIM29,UPK2,USP2,VPS11"
TCGA.CK.5914.01A	11	118506073	118842586	49	0.0624	NEUTRAL	NA	7	"BCL9L,CXCR5,DDX6,FOXR1,PHLDB1,TREH,UPK2"
TCGA.AA.A00N.01A	11	118512944	118527341	8	-0.0143	NEUTRAL	NA	1	PHLDB1
TCGA.AG.3909.01A	11	118514481	118828757	45	0.2814	NEUTRAL	NA	6	"BCL9L,CXCR5,DDX6,PHLDB1,TREH,UPK2"
TCGA.AA.3930.01A	11	118528962	118550205	10	-0.2407	NEUTRAL	NA	1	TREH
TCGA.AA.A02K.01A	11	118528963	118533535	8	-0.4683	NEUTRAL	NA	1	TREH
TCGA.AG.3906.01A	11	118529329	118533564	8	-0.4185	NEUTRAL	NA	1	TREH
TCGA.AA.A01Q.01A	11	118529594	118766067	7	0.198	NEUTRAL	NA	3	"CXCR5,DDX6,TREH"
TCGA.AA.A02K.01A	11	118550193	126137404	754	-0.0123	NEUTRAL	NA	105	Too-Many
TCGA.AG.4009.01A	11	118550205	118919722	64	0.1734	NEUTRAL	NA	11	"BCL9L,CCDC84,CXCR5,DDX6,FOXR1,HYOU1,RPS25,SLC37A4,TRAPPC4,TREH,UPK2"
TCGA.AG.A01W.01A	11	118608357	118735421	33	-0.2405	NEUTRAL	NA	1	DDX6
TCGA.AA.A00N.01A	11	118625371	118635889	8	0.0532	NEUTRAL	NA	1	DDX6
TCGA.AZ.4684.01A	11	118625371	118888627	44	-0.3302	NEUTRAL	NA	7	"BCL9L,CCDC84,CXCR5,DDX6,FOXR1,RPS25,UPK2"
TCGA.AA.3930.01A	11	118625371	118899915	57	0.2788	NEUTRAL	NA	9	"BCL9L,CCDC84,CXCR5,DDX6,FOXR1,RPS25,SLC37A4,TRAPPC4,UPK2"
TCGA.AG.3906.01A	11	118625371	118899915	54	0.115	NEUTRAL	NA	9	"BCL9L,CCDC84,CXCR5,DDX6,FOXR1,RPS25,SLC37A4,TRAPPC4,UPK2"
TCGA.AA.A01C.01A	11	118630609	119057151	135	-0.3344	NEUTRAL	NA	19	"ABCG4,BCL9L,C2CD2L,CCDC84,CXCR5,DDX6,DPAGT1,FOXR1,H2AFX,HINFP,HMBS,HYOU1,NLRX1,PDZD3,RPS25,SLC37A4,TRAPPC4,UPK2,VPS11"
TCGA.AA.A00N.01A	11	118638890	118842586	21	-0.317	NEUTRAL	NA	5	"BCL9L,CXCR5,DDX6,FOXR1,UPK2"
TCGA.AA.3518	11	118743285	126009499	2779	0.0331	NEUTRAL	NA	100	"ABCG4,ACRV1,ARHGEF12,BCL9L,BLID,BSX,C11orf63,C1QTNF5,C2CD2L,CBL,CCDC15,CCDC153,CCDC84,CDON,CHEK1,CLMP,CRTAM,CXCR5,DDX25,DPAGT1,EI24,ESAM,FEZ1,FOXR1,GRAMD1B,GRIK4,H2AFX,HEPACAM,HEPN1,HINFP,HMBS,HSPA8,HYLS1,HYOU1,LOC403312,MCAM,MFRP,MSANTD2,NLRX1,NRGN,OAF,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PDZD3,PKNOX2,POU2F3,PUS3,PVRL1,RNF26,ROBO3,ROBO4,RPS25,SC5D,SCN3B,SIAE,SLC37A2,SLC37A4,SORL1,SPA17,STT3A,TBCEL,TBRG1,TECTA,THY1,TMEM136,TMEM218,TMEM225,TRAPPC4,TRIM29,UBASH3B,UPK2,USP2,VPS11,VSIG2,VWA5A,ZNF202"
TCGA.AA.A00L.01A	11	118764268	118851150	18	-0.1164	NEUTRAL	NA	4	"BCL9L,CXCR5,FOXR1,UPK2"
TCGA.AA.A00D.01A	11	118771338	118842586	11	-0.3078	NEUTRAL	NA	3	"BCL9L,FOXR1,UPK2"
TCGA.AF.3914.01A	11	118771338	118869674	16	-0.4006	NEUTRAL	NA	4	"BCL9L,CCDC84,FOXR1,UPK2"
TCGA.AG.A00C.01A	11	118771338	120201065	207	0.2915	NEUTRAL	NA	30	"ABCG4,BCL9L,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,DPAGT1,FOXR1,H2AFX,HINFP,HMBS,HYOU1,MCAM,MFRP,NLRX1,OAF,PDZD3,POU2F3,PVRL1,RNF26,RPS25,SLC37A4,THY1,TMEM136,TRAPPC4,TRIM29,UPK2,USP2,VPS11"
TCGA.AA.A01Q.01A	11	118827007	118851150	9	0.3442	NEUTRAL	NA	2	"FOXR1,UPK2"
TCGA.AG.A015.01A	11	118827007	120976508	266	-0.2075	NEUTRAL	NA	33	"ABCG4,ARHGEF12,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,DPAGT1,FOXR1,GRIK4,H2AFX,HINFP,HMBS,HYOU1,MCAM,MFRP,NLRX1,OAF,PDZD3,POU2F3,PVRL1,RNF26,RPS25,SLC37A4,TBCEL,TECTA,THY1,TMEM136,TRAPPC4,TRIM29,UPK2,USP2,VPS11"
TCGA.AA.A00Q.01A	11	118827541	118926728	44	-0.1482	NEUTRAL	NA	7	"CCDC84,FOXR1,HYOU1,RPS25,SLC37A4,TRAPPC4,UPK2"
TCGA.AA.A01K.01A	11	118827541	119243400	157	-0.4722	NEUTRAL	NA	23	"ABCG4,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,DPAGT1,FOXR1,H2AFX,HINFP,HMBS,HYOU1,MCAM,MFRP,NLRX1,PDZD3,RNF26,RPS25,SLC37A4,TRAPPC4,UPK2,USP2,VPS11"
TCGA.AA.A00F.01A	11	118849452	118918922	25	0.1245	NEUTRAL	NA	6	"CCDC84,FOXR1,HYOU1,RPS25,SLC37A4,TRAPPC4"
TCGA.AA.A00L.01A	11	118851844	118918922	23	0.3725	NEUTRAL	NA	6	"CCDC84,FOXR1,HYOU1,RPS25,SLC37A4,TRAPPC4"
TCGA.AA.A01Q.01A	11	118851844	118955674	44	-0.4023	NEUTRAL	NA	8	"CCDC84,FOXR1,HMBS,HYOU1,RPS25,SLC37A4,TRAPPC4,VPS11"
TCGA.AG.3611.01A	11	118868886	118888914	12	-0.3081	NEUTRAL	NA	2	"CCDC84,RPS25"
TCGA.AF.3914.01A	11	118881406	118898886	21	0.1567	NEUTRAL	NA	4	"CCDC84,RPS25,SLC37A4,TRAPPC4"
TCGA.AZ.4684.01A	11	118888914	120331324	226	0.0933	NEUTRAL	NA	27	"ABCG4,ARHGEF12,C1QTNF5,C2CD2L,CBL,CCDC153,DPAGT1,H2AFX,HINFP,HMBS,HYOU1,MCAM,MFRP,NLRX1,OAF,PDZD3,POU2F3,PVRL1,RNF26,RPS25,SLC37A4,THY1,TMEM136,TRAPPC4,TRIM29,USP2,VPS11"
TCGA.CM.6675	11	118892276	134944769	6503	-0.0044	NEUTRAL	NA	132	Too-Many
TCGA.AG.A023.01A	11	118892419	134244457	981	-0.1176	NEUTRAL	NA	131	Too-Many
TCGA.AG.3909.01A	11	118896630	118955674	36	-0.2773	NEUTRAL	NA	4	"HMBS,HYOU1,SLC37A4,VPS11"
TCGA.AF.3914.01A	11	118899915	118922479	13	-0.2781	NEUTRAL	NA	2	"HYOU1,SLC37A4"
TCGA.AA.A00D.01A	11	118917056	122720768	285	-0.0581	NEUTRAL	NA	32	"ABCG4,ARHGEF12,BLID,C1QTNF5,C2CD2L,CBL,CCDC153,CRTAM,DPAGT1,GRIK4,H2AFX,HINFP,HMBS,HYOU1,MCAM,MFRP,NLRX1,OAF,PDZD3,POU2F3,PVRL1,RNF26,SC5D,SORL1,TBCEL,TECTA,THY1,TMEM136,TRIM29,UBASH3B,USP2,VPS11"
TCGA.AA.A00L.01A	11	118919135	119044166	63	-0.1116	NEUTRAL	NA	9	"ABCG4,C2CD2L,DPAGT1,H2AFX,HINFP,HMBS,HYOU1,NLRX1,VPS11"
TCGA.AA.A00F.01A	11	118919135	122928943	300	-0.2366	NEUTRAL	NA	35	"ABCG4,ARHGEF12,BLID,BSX,C11orf63,C1QTNF5,C2CD2L,CBL,CCDC153,CRTAM,DPAGT1,GRIK4,H2AFX,HINFP,HMBS,HSPA8,HYOU1,MCAM,MFRP,NLRX1,OAF,PDZD3,POU2F3,PVRL1,RNF26,SC5D,SORL1,TBCEL,TECTA,THY1,TMEM136,TRIM29,UBASH3B,USP2,VPS11"
TCGA.AG.4009.01A	11	118920238	119031544	64	-0.4863	NEUTRAL	NA	8	"ABCG4,C2CD2L,DPAGT1,H2AFX,HINFP,HMBS,HYOU1,VPS11"
TCGA.AF.3914.01A	11	118938528	119243400	119	-0.3229	NEUTRAL	NA	16	"ABCG4,C1QTNF5,C2CD2L,CBL,CCDC153,DPAGT1,H2AFX,HINFP,HMBS,MCAM,MFRP,NLRX1,PDZD3,RNF26,USP2,VPS11"
TCGA.AG.3906.01A	11	118948179	118997618	29	0.1153	NEUTRAL	NA	6	"C2CD2L,DPAGT1,H2AFX,HINFP,HMBS,VPS11"
TCGA.AA.A010.01A	11	118955674	119155930	79	-0.424	NEUTRAL	NA	10	"ABCG4,C2CD2L,CBL,CCDC153,DPAGT1,H2AFX,HINFP,HMBS,NLRX1,PDZD3"
TCGA.AG.3891.01A	11	118955674	119170184	78	0.2109	NEUTRAL	NA	10	"ABCG4,C2CD2L,CBL,CCDC153,DPAGT1,H2AFX,HINFP,HMBS,NLRX1,PDZD3"
TCGA.AA.3930.01A	11	118958890	134257391	1031	0.0559	NEUTRAL	NA	128	Too-Many
TCGA.AA.A00Q.01A	11	118959290	124016535	343	-0.1342	NEUTRAL	NA	49	"ABCG4,ARHGEF12,BLID,BSX,C11orf63,C1QTNF5,C2CD2L,CBL,CCDC153,CLMP,CRTAM,DPAGT1,GRAMD1B,GRIK4,H2AFX,HINFP,HMBS,HSPA8,MCAM,MFRP,NLRX1,OAF,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8D4,PDZD3,POU2F3,PVRL1,RNF26,SC5D,SCN3B,SORL1,TBCEL,TECTA,THY1,TMEM136,TMEM225,TRIM29,UBASH3B,USP2,VWA5A,ZNF202"
TCGA.AA.A00O.01A	11	118965656	134257391	925	-0.0143	NEUTRAL	NA	127	Too-Many
TCGA.AA.A01D.01A	11	118970925	119229414	82	-0.1179	NEUTRAL	NA	13	"ABCG4,C1QTNF5,C2CD2L,CBL,CCDC153,DPAGT1,HINFP,MCAM,MFRP,NLRX1,PDZD3,RNF26,USP2"
TCGA.AA.A01Q.01A	11	118972168	119004742	17	-0.2367	NEUTRAL	NA	3	"C2CD2L,DPAGT1,HINFP"
TCGA.CK.5914.01A	11	118982970	119149173	54	-0.3125	NEUTRAL	NA	7	"ABCG4,C2CD2L,CBL,CCDC153,HINFP,NLRX1,PDZD3"
TCGA.AG.3909.01A	11	118986728	119004742	8	0.2284	NEUTRAL	NA	2	"C2CD2L,HINFP"
TCGA.DT.5265	11	119004685	129494363	4139	-0.5081	NEUTRAL	NA	102	Too-Many
TCGA.AA.3862.01A	11	119027551	122669596	266	-0.303	NEUTRAL	NA	24	"ABCG4,ARHGEF12,BLID,C1QTNF5,CBL,CCDC153,GRIK4,MCAM,MFRP,NLRX1,OAF,PDZD3,POU2F3,PVRL1,RNF26,SC5D,SORL1,TBCEL,TECTA,THY1,TMEM136,TRIM29,UBASH3B,USP2"
TCGA.AG.4009.01A	11	119042047	119170184	34	0.2084	NEUTRAL	NA	4	"CBL,CCDC153,NLRX1,PDZD3"
TCGA.AA.A01Q.01A	11	119043565	119061382	16	-0.2071	NEUTRAL	NA	3	"CCDC153,NLRX1,PDZD3"
TCGA.AA.A00N.01A	11	119043565	119155930	32	0.0748	NEUTRAL	NA	4	"CBL,CCDC153,NLRX1,PDZD3"
TCGA.AA.A00L.01A	11	119045144	119180514	32	0.254	NEUTRAL	NA	5	"CBL,CCDC153,MCAM,NLRX1,PDZD3"
TCGA.AG.3909.01A	11	119051824	119227848	47	0.241	NEUTRAL	NA	9	"C1QTNF5,CBL,CCDC153,MCAM,MFRP,NLRX1,PDZD3,RNF26,USP2"
TCGA.AA.A01C.01A	11	119057949	134257391	904	-0.0175	NEUTRAL	NA	121	Too-Many
TCGA.AA.A02E.01A	11	119059035	126141300	576	-0.2044	NEUTRAL	NA	87	"ACRV1,ARHGEF12,BLID,BSX,C11orf63,C1QTNF5,CBL,CCDC15,CCDC153,CDON,CHEK1,CLMP,CRTAM,DDX25,EI24,ESAM,FAM118B,FEZ1,FOXRED1,GRAMD1B,GRIK4,HEPACAM,HEPN1,HSPA8,HYLS1,LOC403312,MCAM,MFRP,MSANTD2,NRGN,OAF,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PDZD3,PKNOX2,POU2F3,PUS3,PVRL1,RNF26,ROBO3,ROBO4,RPUSD4,SC5D,SCN3B,SIAE,SLC37A2,SORL1,SPA17,SRPR,STT3A,TBCEL,TBRG1,TECTA,THY1,TMEM136,TMEM218,TMEM225,TRIM29,UBASH3B,USP2,VSIG2,VWA5A,ZNF202"
TCGA.AA.A01Q.01A	11	119063811	119510534	54	0.1327	NEUTRAL	NA	9	"C1QTNF5,CBL,CCDC153,MCAM,MFRP,PVRL1,RNF26,THY1,USP2"
TCGA.AG.3906.01A	11	119103188	119170184	15	-0.05	NEUTRAL	NA	1	CBL
TCGA.CK.5914.01A	11	119155629	119170184	7	0.3737	NEUTRAL	NA	1	CBL
TCGA.AG.4009.01A	11	119180514	119229735	24	-0.4066	NEUTRAL	NA	5	"C1QTNF5,MCAM,MFRP,RNF26,USP2"
TCGA.AA.A00L.01A	11	119181019	123755925	245	0.0059	NEUTRAL	NA	30	"ARHGEF12,BLID,BSX,C11orf63,C1QTNF5,CLMP,CRTAM,GRAMD1B,GRIK4,HSPA8,MCAM,MFRP,OAF,OR6M1,OR6X1,POU2F3,PVRL1,RNF26,SC5D,SCN3B,SORL1,TBCEL,TECTA,THY1,TMEM136,TMEM225,TRIM29,UBASH3B,USP2,ZNF202"
TCGA.AG.3891.01A	11	119185812	123624241	283	-0.0567	NEUTRAL	NA	27	"ARHGEF12,BLID,BSX,C11orf63,C1QTNF5,CLMP,CRTAM,GRAMD1B,GRIK4,HSPA8,MCAM,MFRP,OAF,POU2F3,PVRL1,RNF26,SC5D,SCN3B,SORL1,TBCEL,TECTA,THY1,TMEM136,TRIM29,UBASH3B,USP2,ZNF202"
TCGA.AG.3906.01A	11	119205841	119216516	10	0.3514	NEUTRAL	NA	3	"C1QTNF5,MFRP,RNF26"
TCGA.AG.3906.01A	11	119227848	120007929	29	0.0052	NEUTRAL	NA	4	"PVRL1,THY1,TRIM29,USP2"
TCGA.CK.5914.01A	11	119234522	120168965	32	-0.0028	NEUTRAL	NA	6	"OAF,POU2F3,PVRL1,THY1,TRIM29,USP2"
TCGA.AA.A01D.01A	11	119243400	124623575	329	0.0463	NEUTRAL	NA	53	"ARHGEF12,BLID,BSX,C11orf63,CLMP,CRTAM,ESAM,GRAMD1B,GRIK4,HSPA8,NRGN,OAF,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,POU2F3,PVRL1,SC5D,SCN3B,SIAE,SORL1,SPA17,TBCEL,TBRG1,TECTA,THY1,TMEM136,TMEM225,TRIM29,UBASH3B,USP2,VSIG2,VWA5A,ZNF202"
TCGA.AA.A00N.01A	11	119290076	120180087	36	0.3537	NEUTRAL	NA	5	"OAF,POU2F3,PVRL1,THY1,TRIM29"
TCGA.AF.3914.01A	11	119290076	124561539	329	0.1015	NEUTRAL	NA	49	"ARHGEF12,BLID,BSX,C11orf63,CLMP,CRTAM,GRAMD1B,GRIK4,HSPA8,OAF,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,POU2F3,PVRL1,SC5D,SCN3B,SIAE,SORL1,SPA17,TBCEL,TBRG1,TECTA,THY1,TMEM136,TMEM225,TRIM29,UBASH3B,VWA5A,ZNF202"
TCGA.AA.A01K.01A	11	119290076	134115307	786	0.1083	NEUTRAL	NA	108	Too-Many
TCGA.A6.6653	11	119408795	134944769	6392	-0.0246	NEUTRAL	NA	112	Too-Many
TCGA.AG.A01W.01A	11	119693100	119807644	16	0.1598	NEUTRAL	NA	0	None
TCGA.AA.3522	11	119798933	122321062	1021	-0.3413	NEUTRAL	NA	11	"ARHGEF12,BLID,GRIK4,OAF,POU2F3,SC5D,SORL1,TBCEL,TECTA,TMEM136,TRIM29"
TCGA.AG.A01W.01A	11	119813168	120421574	48	-0.3502	NEUTRAL	NA	6	"ARHGEF12,GRIK4,OAF,POU2F3,TMEM136,TRIM29"
TCGA.AA.3982	11	120025242	120048154	6	-0.2774	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	11	120096341	120291415	23	-0.1602	NEUTRAL	NA	4	"ARHGEF12,OAF,POU2F3,TMEM136"
TCGA.AA.A010.01A	11	120139860	120180087	8	-0.3269	NEUTRAL	NA	1	POU2F3
TCGA.AG.3906.01A	11	120139860	121023541	91	-0.0768	NEUTRAL	NA	6	"ARHGEF12,GRIK4,POU2F3,TBCEL,TECTA,TMEM136"
TCGA.AA.A01Q.01A	11	120168965	124543473	248	0.1727	NEUTRAL	NA	44	"ARHGEF12,BLID,BSX,C11orf63,CLMP,CRTAM,GRAMD1B,GRIK4,HSPA8,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,POU2F3,SC5D,SCN3B,SIAE,SORL1,TBCEL,TBRG1,TECTA,TMEM136,TMEM225,UBASH3B,VWA5A,ZNF202"
TCGA.AG.A00C.01A	11	120207869	123488957	209	-0.1754	NEUTRAL	NA	14	"ARHGEF12,BLID,BSX,C11orf63,CLMP,CRTAM,GRAMD1B,GRIK4,HSPA8,SC5D,SORL1,TBCEL,TECTA,UBASH3B"
TCGA.AM.5820	11	120231617	120365027	37	-0.2637	NEUTRAL	NA	1	ARHGEF12
TCGA.AA.3982	11	120269307	120890822	277	0.3749	NEUTRAL	NA	2	"ARHGEF12,GRIK4"
TCGA.CK.5914.01A	11	120276757	120530967	40	0.219	NEUTRAL	NA	2	"ARHGEF12,GRIK4"
TCGA.AG.4009.01A	11	120292440	122726373	155	0.3581	NEUTRAL	NA	9	"ARHGEF12,BLID,CRTAM,GRIK4,SC5D,SORL1,TBCEL,TECTA,UBASH3B"
TCGA.AA.A010.01A	11	120317105	120348888	20	-0.1451	NEUTRAL	NA	1	ARHGEF12
TCGA.AZ.4684.01A	11	120335895	120916351	33	-0.1959	NEUTRAL	NA	3	"ARHGEF12,GRIK4,TBCEL"
TCGA.AG.A01L.01A	11	120346008	120811009	20	0.1679	NEUTRAL	NA	2	"ARHGEF12,GRIK4"
TCGA.AM.5820	11	120373528	133765366	5478	0.0898	NEUTRAL	NA	97	"ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,BLID,BSX,C11orf44,C11orf45,C11orf63,CCDC15,CDON,CHEK1,CLMP,CRTAM,DCPS,DDX25,EI24,ESAM,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GRAMD1B,GRIK4,HEPACAM,HEPN1,HSPA8,HYLS1,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NFRKB,NRGN,NTM,OPCML,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SC5D,SCN3B,SIAE,SLC37A2,SNX19,SORL1,SPA17,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TBCEL,TBRG1,TECTA,TIRAP,TMEM218,TMEM225,TMEM45B,TP53AIP1,UBASH3B,VSIG2,VWA5A,ZBTB44,ZNF202"
TCGA.AG.A01W.01A	11	120423454	120435851	5	0.1921	NEUTRAL	NA	1	GRIK4
TCGA.AG.A01W.01A	11	120462660	120489426	6	-0.3917	NEUTRAL	NA	1	GRIK4
TCGA.AG.A01W.01A	11	120536056	123129480	148	-0.1699	NEUTRAL	NA	12	"BLID,BSX,C11orf63,CLMP,CRTAM,GRIK4,HSPA8,SC5D,SORL1,TBCEL,TECTA,UBASH3B"
TCGA.AG.A01L.01A	11	120823537	121028508	26	-0.2846	NEUTRAL	NA	3	"GRIK4,TBCEL,TECTA"
TCGA.AA.A010.01A	11	120831571	120973355	13	-0.2329	NEUTRAL	NA	2	"GRIK4,TBCEL"
TCGA.AG.3909.01A	11	120852778	121348790	37	0.1228	NEUTRAL	NA	5	"GRIK4,SC5D,SORL1,TBCEL,TECTA"
TCGA.AA.3850	11	120877785	120910722	8	-0.33165	NEUTRAL	NA	1	TBCEL
TCGA.AA.3941	11	120877785	123742297	1102	-0.2858	NEUTRAL	NA	16	"BLID,BSX,C11orf63,CLMP,CRTAM,GRAMD1B,HSPA8,OR6M1,OR6X1,SC5D,SCN3B,SORL1,TBCEL,TECTA,UBASH3B,ZNF202"
TCGA.G4.6626	11	120889544	134944769	5737	0.1518	NEUTRAL	NA	105	Too-Many
TCGA.AA.3982	11	120905550	120965686	15	-0.4842	NEUTRAL	NA	1	TBCEL
TCGA.AA.3509.01A	11	120929007	134257391	813	-0.0376	NEUTRAL	NA	105	Too-Many
TCGA.AA.3850	11	120935368	120976412	10	-0.21295	NEUTRAL	NA	2	"TBCEL,TECTA"
TCGA.AA.3982	11	120968461	123515704	997	0.2854	NEUTRAL	NA	12	"BLID,BSX,C11orf63,CLMP,CRTAM,GRAMD1B,HSPA8,SC5D,SCN3B,SORL1,TECTA,UBASH3B"
TCGA.AZ.4684.01A	11	120973355	121490425	69	0.1764	NEUTRAL	NA	3	"SC5D,SORL1,TECTA"
TCGA.AA.3850	11	120976427	121076937	57	0.30515	NEUTRAL	NA	1	TECTA
TCGA.CK.5914.01A	11	120989024	121348790	25	-0.1731	NEUTRAL	NA	3	"SC5D,SORL1,TECTA"
TCGA.AG.A015.01A	11	121023541	121058494	8	-0.1197	NEUTRAL	NA	1	TECTA
TCGA.AG.3906.01A	11	121028508	121174058	12	-0.4552	NEUTRAL	NA	2	"SC5D,TECTA"
TCGA.AA.A00N.01A	11	121028508	121367561	21	-0.3397	NEUTRAL	NA	3	"SC5D,SORL1,TECTA"
TCGA.AA.3850	11	121077372	121129411	23	-0.45765	NEUTRAL	NA	0	None
TCGA.AA.3850	11	121136603	121837453	269	0.16445	NEUTRAL	NA	2	"SC5D,SORL1"
TCGA.AG.A01L.01A	11	121174058	124743947	226	-0.1673	NEUTRAL	NA	44	"BLID,BSX,C11orf63,CLMP,CRTAM,ESAM,GRAMD1B,HSPA8,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,ROBO3,SC5D,SCN3B,SIAE,SORL1,SPA17,TBRG1,TMEM225,UBASH3B,VSIG2,VWA5A,ZNF202"
TCGA.AG.A015.01A	11	121174058	125489858	333	-0.2409	NEUTRAL	NA	55	"BLID,BSX,C11orf63,CCDC15,CLMP,CRTAM,EI24,ESAM,FEZ1,GRAMD1B,HEPACAM,HEPN1,HSPA8,LOC403312,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PKNOX2,ROBO3,ROBO4,SC5D,SCN3B,SIAE,SLC37A2,SORL1,SPA17,STT3A,TBRG1,TMEM218,TMEM225,UBASH3B,VSIG2,VWA5A,ZNF202"
TCGA.AG.3906.01A	11	121175023	122726373	71	0.0093	NEUTRAL	NA	5	"BLID,CRTAM,SC5D,SORL1,UBASH3B"
TCGA.AG.3909.01A	11	121475784	121481728	5	0.1417	NEUTRAL	NA	1	SORL1
TCGA.CK.5914.01A	11	121475784	121483392	6	-0.4265	NEUTRAL	NA	1	SORL1
TCGA.AZ.4684.01A	11	121491751	123479329	73	-0.1395	NEUTRAL	NA	9	"BLID,BSX,C11orf63,CLMP,CRTAM,GRAMD1B,HSPA8,SORL1,UBASH3B"
TCGA.AA.3850	11	121988235	122314281	110	-0.06635	NEUTRAL	NA	0	None
TCGA.AA.3522	11	122328328	123815154	617	0.0263	NEUTRAL	NA	15	"BSX,C11orf63,CLMP,CRTAM,GRAMD1B,HSPA8,OR4D5,OR6M1,OR6T1,OR6X1,OR8D4,SCN3B,TMEM225,UBASH3B,ZNF202"
TCGA.AA.3850	11	122367643	122394828	12	-0.49825	NEUTRAL	NA	0	None
TCGA.AA.3850	11	122403462	123601932	512	0.33215	NEUTRAL	NA	9	"BSX,C11orf63,CLMP,CRTAM,GRAMD1B,HSPA8,SCN3B,UBASH3B,ZNF202"
TCGA.F4.6459	11	122627441	134944769	5101	-0.0603	NEUTRAL	NA	100	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,BSX,C11orf44,C11orf45,C11orf63,CCDC15,CDON,CHEK1,CLMP,CRTAM,DCPS,DDX25,EI24,ESAM,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,GRAMD1B,HEPACAM,HEPN1,HSPA8,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NCAPD3,NFRKB,NRGN,NTM,OPCML,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SCN3B,SIAE,SLC37A2,SNX19,SPA17,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TBRG1,THYN1,TIRAP,TMEM218,TMEM225,TMEM45B,TP53AIP1,UBASH3B,VPS26B,VSIG2,VWA5A,ZBTB44,ZNF202"
TCGA.AA.3862.01A	11	122671858	124908310	217	0.2687	NEUTRAL	NA	45	"BSX,C11orf63,CCDC15,CLMP,CRTAM,ESAM,GRAMD1B,HEPACAM,HEPN1,HSPA8,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,ROBO3,ROBO4,SCN3B,SIAE,SPA17,TBRG1,TMEM225,UBASH3B,VSIG2,VWA5A,ZNF202"
TCGA.CK.5914.01A	11	122709176	122849921	22	0.0379	NEUTRAL	NA	3	"BSX,C11orf63,CRTAM"
TCGA.AG.3909.01A	11	122720768	122827146	17	0.2944	NEUTRAL	NA	2	"C11orf63,CRTAM"
TCGA.AA.A00D.01A	11	122722350	122829929	18	0.2706	NEUTRAL	NA	2	"C11orf63,CRTAM"
TCGA.AG.4009.01A	11	122733111	122775819	9	-0.1733	NEUTRAL	NA	2	"C11orf63,CRTAM"
TCGA.AA.A00N.01A	11	122733111	123471118	41	-0.2902	NEUTRAL	NA	6	"BSX,C11orf63,CLMP,CRTAM,GRAMD1B,HSPA8"
TCGA.AA.A010.01A	11	122795564	122829929	6	-0.3516	NEUTRAL	NA	1	C11orf63
TCGA.AG.4009.01A	11	122795564	124545133	116	0.3283	NEUTRAL	NA	34	"BSX,C11orf63,CLMP,GRAMD1B,HSPA8,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,SCN3B,SIAE,SPA17,TBRG1,TMEM225,VWA5A,ZNF202"
TCGA.AG.3906.01A	11	122805101	123601198	54	-0.0213	NEUTRAL	NA	7	"BSX,C11orf63,CLMP,GRAMD1B,HSPA8,SCN3B,ZNF202"
TCGA.AG.3909.01A	11	122828030	122931831	14	-0.3854	NEUTRAL	NA	3	"BSX,C11orf63,HSPA8"
TCGA.AA.A00D.01A	11	122928400	125483942	174	-0.1052	NEUTRAL	NA	48	"CCDC15,CLMP,EI24,ESAM,FEZ1,GRAMD1B,HEPACAM,HEPN1,HSPA8,LOC403312,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PKNOX2,ROBO3,ROBO4,SCN3B,SIAE,SLC37A2,SPA17,STT3A,TBRG1,TMEM218,TMEM225,VSIG2,VWA5A,ZNF202"
TCGA.AA.A00F.01A	11	122929158	122931831	7	0.2703	NEUTRAL	NA	1	HSPA8
TCGA.CK.5914.01A	11	122944130	123454934	10	-0.2382	NEUTRAL	NA	2	"CLMP,GRAMD1B"
TCGA.AA.A00F.01A	11	122944130	125648372	191	-0.2356	NEUTRAL	NA	51	"ACRV1,CCDC15,CHEK1,CLMP,EI24,ESAM,FEZ1,GRAMD1B,HEPACAM,HEPN1,LOC403312,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PKNOX2,ROBO3,ROBO4,SCN3B,SIAE,SLC37A2,SPA17,STT3A,TBRG1,TMEM218,TMEM225,VSIG2,VWA5A,ZNF202"
TCGA.A6.3808.01A	11	122944130	126126454	325	0.2073	NEUTRAL	NA	59	"ACRV1,CCDC15,CDON,CHEK1,CLMP,DDX25,EI24,ESAM,FAM118B,FEZ1,GRAMD1B,HEPACAM,HEPN1,HYLS1,LOC403312,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PUS3,ROBO3,ROBO4,RPUSD4,SCN3B,SIAE,SLC37A2,SPA17,STT3A,TBRG1,TMEM218,TMEM225,VSIG2,VWA5A,ZNF202"
TCGA.AG.A01W.01A	11	123181285	123694322	36	0.3127	NEUTRAL	NA	5	"GRAMD1B,OR6M1,OR6X1,SCN3B,ZNF202"
TCGA.AG.A02X.01A	11	123474087	134257391	628	0.1192	NEUTRAL	NA	94	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ESAM,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,GRAMD1B,HEPACAM,HEPN1,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NCAPD3,NFRKB,NRGN,NTM,OPCML,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SCN3B,SIAE,SLC37A2,SNX19,SPA17,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TBRG1,THYN1,TIRAP,TMEM218,TMEM225,TMEM45B,TP53AIP1,VPS26B,VSIG2,VWA5A,ZBTB44,ZNF202"
TCGA.AZ.4684.01A	11	123480454	124828991	155	0.1858	NEUTRAL	NA	39	"CCDC15,ESAM,GRAMD1B,HEPACAM,HEPN1,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,ROBO3,ROBO4,SCN3B,SIAE,SPA17,TBRG1,TMEM225,VSIG2,VWA5A,ZNF202"
TCGA.AG.A00C.01A	11	123489354	123624241	15	0.1824	NEUTRAL	NA	3	"GRAMD1B,SCN3B,ZNF202"
TCGA.AG.3909.01A	11	123489798	123516258	5	0.3033	NEUTRAL	NA	2	"GRAMD1B,SCN3B"
TCGA.CK.5914.01A	11	123489798	124487153	58	0.1251	NEUTRAL	NA	27	"GRAMD1B,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,SCN3B,TMEM225,VWA5A,ZNF202"
TCGA.AA.3982	11	123520151	123540959	13	-0.1418	NEUTRAL	NA	1	SCN3B
TCGA.AG.3909.01A	11	123524384	123624241	8	-0.2801	NEUTRAL	NA	2	"SCN3B,ZNF202"
TCGA.AA.A00N.01A	11	123524384	123777202	14	-0.0994	NEUTRAL	NA	6	"OR6M1,OR6X1,OR8D4,SCN3B,TMEM225,ZNF202"
TCGA.AA.3982	11	123601915	124093171	214	-0.0001	NEUTRAL	NA	13	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8D4,TMEM225,VWA5A,ZNF202"
TCGA.AA.3850	11	123602015	123762270	57	-0.15645	NEUTRAL	NA	4	"OR6M1,OR6X1,TMEM225,ZNF202"
TCGA.AG.3906.01A	11	123624241	124012284	26	-0.3546	NEUTRAL	NA	12	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8D4,TMEM225,VWA5A"
TCGA.AA.3811	11	123626735	124247074	289	-0.2915	NEUTRAL	NA	16	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,TMEM225,VWA5A"
TCGA.AG.A00C.01A	11	123676109	123777202	6	-0.2767	NEUTRAL	NA	3	"OR6M1,OR8D4,TMEM225"
TCGA.AA.A010.01A	11	123676109	123908775	13	-0.3062	NEUTRAL	NA	10	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR8D4,TMEM225"
TCGA.AG.A01W.01A	11	123757457	124272769	86	-0.1316	NEUTRAL	NA	16	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6T1,OR8B2,OR8B3,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,VWA5A"
TCGA.AA.3850	11	123777301	124086421	145	-0.01995	NEUTRAL	NA	9	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6T1,OR8D4,VWA5A"
TCGA.AA.3522	11	123821414	126389257	969	-0.3229	NEUTRAL	NA	55	"ACRV1,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ESAM,FAM118B,FEZ1,FOXRED1,HEPACAM,HEPN1,HYLS1,KIRREL3,LOC403312,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PUS3,ROBO3,ROBO4,RPUSD4,SIAE,SLC37A2,SPA17,SRPR,ST3GAL4,STT3A,TBRG1,TIRAP,TMEM218,VSIG2,VWA5A"
TCGA.AA.A00L.01A	11	123908775	124767558	86	-0.0325	NEUTRAL	NA	23	"ESAM,MSANTD2,NRGN,OR10G7,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8G1,OR8G2,OR8G5,PANX3,ROBO3,ROBO4,SIAE,SPA17,TBRG1,VSIG2,VWA5A"
TCGA.AG.A00C.01A	11	123993628	124543473	46	-0.2696	NEUTRAL	NA	15	"OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8G1,OR8G2,OR8G5,PANX3,SIAE,TBRG1,VWA5A"
TCGA.AG.3891.01A	11	124007229	134257391	596	-0.1307	NEUTRAL	NA	80	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ESAM,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,HEPACAM,HEPN1,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NCAPD3,NFRKB,NRGN,NTM,OPCML,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SIAE,SLC37A2,SNX19,SPA17,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TBRG1,THYN1,TIRAP,TMEM218,TMEM45B,TP53AIP1,VPS26B,VSIG2,VWA5A,ZBTB44"
TCGA.AA.A010.01A	11	124012284	124439935	17	-0.1223	NEUTRAL	NA	11	"OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8G1,OR8G2,OR8G5,VWA5A"
TCGA.AG.3906.01A	11	124013117	124615392	41	-0.0939	NEUTRAL	NA	17	"NRGN,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8G1,OR8G2,OR8G5,PANX3,SIAE,SPA17,TBRG1,VWA5A"
TCGA.AA.3982	11	124115142	124232608	70	-0.2961	NEUTRAL	NA	4	"OR8D1,OR8D2,OR8G1,OR8G5"
TCGA.AA.3866	11	124115142	134944769	4454	0.0762	NEUTRAL	NA	78	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ESAM,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,HEPACAM,HEPN1,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NCAPD3,NFRKB,NRGN,NTM,OPCML,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8G1,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SIAE,SLC37A2,SNX19,SPA17,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TBRG1,THYN1,TIRAP,TMEM218,TMEM45B,TP53AIP1,VPS26B,VSIG2,ZBTB44"
TCGA.AA.3982	11	124247186	124377196	50	-0.0118	NEUTRAL	NA	4	"OR8B2,OR8B3,OR8B4,OR8B8"
TCGA.AA.3811	11	124247186	126708661	938	0.2277	NEUTRAL	NA	44	"ACRV1,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ESAM,FAM118B,FEZ1,FOXRED1,HEPACAM,HEPN1,HYLS1,KIRREL3,LOC403312,MSANTD2,NRGN,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PUS3,ROBO3,ROBO4,RPUSD4,SIAE,SLC37A2,SPA17,SRPR,ST3GAL4,STT3A,TBRG1,TIRAP,TMEM218,VSIG2"
TCGA.AA.A00Q.01A	11	124266259	134257391	457	-0.1148	NEUTRAL	NA	73	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ESAM,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,HEPACAM,HEPN1,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NCAPD3,NFRKB,NRGN,NTM,OPCML,OR8A1,OR8B12,OR8B3,OR8B4,OR8B8,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SIAE,SLC37A2,SNX19,SPA17,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TBRG1,THYN1,TIRAP,TMEM218,TMEM45B,TP53AIP1,VPS26B,VSIG2,ZBTB44"
TCGA.AA.3850	11	124285734	124470425	61	-0.05375	NEUTRAL	NA	4	"OR8A1,OR8B12,OR8B4,OR8B8"
TCGA.AG.A01W.01A	11	124294836	124438406	25	0.3115	NEUTRAL	NA	2	"OR8B12,OR8B8"
TCGA.AA.3941	11	124383994	124872016	142	-0.1565	NEUTRAL	NA	15	"CCDC15,ESAM,HEPACAM,HEPN1,MSANTD2,NRGN,OR8A1,OR8B12,PANX3,ROBO3,ROBO4,SIAE,SPA17,TBRG1,VSIG2"
TCGA.AA.3982	11	124383994	134944769	4313	0.2581	NEUTRAL	NA	70	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ESAM,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,HEPACAM,HEPN1,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NCAPD3,NFRKB,NRGN,NTM,OPCML,OR8A1,OR8B12,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SIAE,SLC37A2,SNX19,SPA17,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TBRG1,THYN1,TIRAP,TMEM218,TMEM45B,TP53AIP1,VPS26B,VSIG2,ZBTB44"
TCGA.AG.A01W.01A	11	124451807	124457299	8	-0.2089	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	124458854	124477187	9	0.3263	NEUTRAL	NA	0	None
TCGA.AA.3850	11	124478324	124820524	101	0.30315	NEUTRAL	NA	12	"ESAM,HEPACAM,HEPN1,MSANTD2,NRGN,PANX3,ROBO3,ROBO4,SIAE,SPA17,TBRG1,VSIG2"
TCGA.CK.5914.01A	11	124489145	124746982	60	-0.4589	NEUTRAL	NA	9	"ESAM,MSANTD2,NRGN,PANX3,ROBO3,SIAE,SPA17,TBRG1,VSIG2"
TCGA.AG.3909.01A	11	124500247	124543473	14	0.0843	NEUTRAL	NA	2	"SIAE,TBRG1"
TCGA.AA.A010.01A	11	124545133	124615392	6	-0.1392	NEUTRAL	NA	3	"NRGN,SIAE,SPA17"
TCGA.AA.A01Q.01A	11	124545133	124626425	16	-0.3448	NEUTRAL	NA	5	"ESAM,NRGN,SIAE,SPA17,VSIG2"
TCGA.AG.A00C.01A	11	124545133	124971049	92	0.1969	NEUTRAL	NA	13	"CCDC15,ESAM,HEPACAM,HEPN1,MSANTD2,NRGN,ROBO3,ROBO4,SIAE,SLC37A2,SPA17,TMEM218,VSIG2"
TCGA.AG.4009.01A	11	124551219	124615392	4	-0.0582	NEUTRAL	NA	2	"NRGN,SPA17"
TCGA.AA.A01Q.01A	11	124628198	125848142	115	0.0499	NEUTRAL	NA	24	"ACRV1,CCDC15,CDON,CHEK1,DDX25,EI24,ESAM,FEZ1,HEPACAM,HEPN1,HYLS1,LOC403312,MSANTD2,PATE1,PATE2,PATE3,PATE4,PKNOX2,PUS3,ROBO3,ROBO4,SLC37A2,STT3A,TMEM218"
TCGA.AA.A01D.01A	11	124637053	134252583	495	-0.0922	NEUTRAL	NA	61	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,HEPACAM,HEPN1,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NCAPD3,NFRKB,NTM,OPCML,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SLC37A2,SNX19,SPATA19,SRPR,ST14,ST3GAL4,STT3A,THYN1,TIRAP,TMEM218,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AF.3914.01A	11	124642822	124767558	40	0.14	NEUTRAL	NA	3	"MSANTD2,ROBO3,ROBO4"
TCGA.AG.3906.01A	11	124642822	124805763	46	0.1042	NEUTRAL	NA	5	"HEPACAM,HEPN1,MSANTD2,ROBO3,ROBO4"
TCGA.AG.4009.01A	11	124644568	124767558	35	0.1842	NEUTRAL	NA	3	"MSANTD2,ROBO3,ROBO4"
TCGA.AG.A01W.01A	11	124726369	124995818	45	-0.0995	NEUTRAL	NA	7	"CCDC15,HEPACAM,HEPN1,ROBO3,ROBO4,SLC37A2,TMEM218"
TCGA.AA.A010.01A	11	124739307	124971049	74	0.1464	NEUTRAL	NA	7	"CCDC15,HEPACAM,HEPN1,ROBO3,ROBO4,SLC37A2,TMEM218"
TCGA.CK.5914.01A	11	124747363	124767558	20	0.0639	NEUTRAL	NA	2	"ROBO3,ROBO4"
TCGA.AA.A00N.01A	11	124748177	124757580	10	-0.4446	NEUTRAL	NA	2	"ROBO3,ROBO4"
TCGA.AG.A01L.01A	11	124751043	126137071	169	-0.1544	NEUTRAL	NA	25	"ACRV1,CCDC15,CDON,CHEK1,DDX25,EI24,FAM118B,FEZ1,HEPACAM,HEPN1,HYLS1,LOC403312,PATE1,PATE2,PATE3,PATE4,PKNOX2,PUS3,ROBO3,ROBO4,RPUSD4,SLC37A2,SRPR,STT3A,TMEM218"
TCGA.AG.3909.01A	11	124754701	124951638	43	-0.0616	NEUTRAL	NA	5	"CCDC15,HEPACAM,HEPN1,ROBO4,SLC37A2"
TCGA.CK.5914.01A	11	124793587	124955274	31	-0.2758	NEUTRAL	NA	3	"CCDC15,HEPACAM,SLC37A2"
TCGA.AA.A00L.01A	11	124805763	125482835	42	-0.0932	NEUTRAL	NA	9	"CCDC15,EI24,FEZ1,HEPACAM,LOC403312,PKNOX2,SLC37A2,STT3A,TMEM218"
TCGA.AA.3850	11	124822168	124932018	16	-0.50805	NEUTRAL	NA	1	CCDC15
TCGA.AG.3906.01A	11	124824579	124971986	32	-0.2697	NEUTRAL	NA	3	"CCDC15,SLC37A2,TMEM218"
TCGA.AG.4009.01A	11	124824579	124971986	30	0.2371	NEUTRAL	NA	3	"CCDC15,SLC37A2,TMEM218"
TCGA.AF.3914.01A	11	124824579	134026850	403	0.0353	NEUTRAL	NA	50	"ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,NCAPD3,NFRKB,NTM,OPCML,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,RPUSD4,SLC37A2,SNX19,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TIRAP,TMEM218,TMEM45B,TP53AIP1,ZBTB44"
TCGA.AA.3862.01A	11	124908770	134257391	506	-0.2861	NEUTRAL	NA	56	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,DCPS,DDX25,EI24,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,NCAPD3,NFRKB,NTM,OPCML,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,RPUSD4,SLC37A2,SNX19,SPATA19,SRPR,ST14,ST3GAL4,STT3A,THYN1,TIRAP,TMEM218,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.3941	11	124932018	125590844	248	-0.0608	NEUTRAL	NA	9	"ACRV1,CHEK1,EI24,FEZ1,LOC403312,PKNOX2,SLC37A2,STT3A,TMEM218"
TCGA.AA.3850	11	124939233	124986091	29	0.30395	NEUTRAL	NA	2	"SLC37A2,TMEM218"
TCGA.AZ.4684.01A	11	124948961	134257391	498	0.0551	NEUTRAL	NA	55	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CDON,CHEK1,DCPS,DDX25,EI24,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,NCAPD3,NFRKB,NTM,OPCML,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,RPUSD4,SLC37A2,SNX19,SPATA19,SRPR,ST14,ST3GAL4,STT3A,THYN1,TIRAP,TMEM218,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.3611.01A	11	124971049	125490585	27	-0.4641	NEUTRAL	NA	6	"EI24,FEZ1,LOC403312,PKNOX2,STT3A,TMEM218"
TCGA.AG.A00C.01A	11	124971986	125351378	19	-0.1995	NEUTRAL	NA	3	"FEZ1,PKNOX2,TMEM218"
TCGA.AA.3850	11	124986354	124997520	9	-0.30045	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	125018876	125274468	27	-0.1192	NEUTRAL	NA	1	PKNOX2
TCGA.G4.6299	11	125117107	125621219	162	0.2309	NEUTRAL	NA	8	"ACRV1,CHEK1,EI24,FEZ1,LOC403312,PATE1,PKNOX2,STT3A"
TCGA.AG.3906.01A	11	125221144	125488251	43	0.0613	NEUTRAL	NA	5	"EI24,FEZ1,LOC403312,PKNOX2,STT3A"
TCGA.AG.A01W.01A	11	125283291	125631682	37	-0.0911	NEUTRAL	NA	8	"ACRV1,CHEK1,EI24,FEZ1,LOC403312,PATE1,PKNOX2,STT3A"
TCGA.AG.4009.01A	11	125323970	125333326	4	0.3651	NEUTRAL	NA	1	FEZ1
TCGA.AA.A00N.01A	11	125333326	125365176	4	-0.3093	NEUTRAL	NA	2	"FEZ1,LOC403312"
TCGA.AG.4009.01A	11	125351378	125451066	10	-0.2345	NEUTRAL	NA	3	"EI24,FEZ1,LOC403312"
TCGA.AG.4009.01A	11	125452227	125648372	41	0.3016	NEUTRAL	NA	6	"ACRV1,CHEK1,EI24,PATE1,PATE2,STT3A"
TCGA.AA.A00N.01A	11	125453409	125482835	13	-0.4439	NEUTRAL	NA	2	"EI24,STT3A"
TCGA.AG.3909.01A	11	125453409	125483942	14	-0.1226	NEUTRAL	NA	2	"EI24,STT3A"
TCGA.AG.A00C.01A	11	125453409	125505277	22	0.2632	NEUTRAL	NA	3	"CHEK1,EI24,STT3A"
TCGA.AA.A010.01A	11	125475487	125490585	11	0.0537	NEUTRAL	NA	1	STT3A
TCGA.AG.3909.01A	11	125488251	125513967	11	-0.5034	NEUTRAL	NA	2	"CHEK1,STT3A"
TCGA.AG.3906.01A	11	125489858	125505277	7	-0.4693	NEUTRAL	NA	2	"CHEK1,STT3A"
TCGA.AG.A015.01A	11	125490585	125513967	9	0.2559	NEUTRAL	NA	2	"CHEK1,STT3A"
TCGA.AG.3611.01A	11	125496599	125513967	8	-0.1003	NEUTRAL	NA	1	CHEK1
TCGA.AG.A00C.01A	11	125507291	125763643	19	-0.1509	NEUTRAL	NA	8	"ACRV1,CHEK1,HYLS1,PATE1,PATE2,PATE3,PATE4,PUS3"
TCGA.AG.3906.01A	11	125507291	126146929	79	-0.0247	NEUTRAL	NA	14	"ACRV1,CDON,CHEK1,DDX25,FAM118B,FOXRED1,HYLS1,PATE1,PATE2,PATE3,PATE4,PUS3,RPUSD4,SRPR"
TCGA.AA.A00N.01A	11	125513674	125708183	23	0.3481	NEUTRAL	NA	6	"ACRV1,CHEK1,PATE1,PATE2,PATE3,PATE4"
TCGA.CK.5914.01A	11	125513967	125708183	22	0.2959	NEUTRAL	NA	6	"ACRV1,CHEK1,PATE1,PATE2,PATE3,PATE4"
TCGA.AG.A015.01A	11	125514355	126126454	56	-0.2889	NEUTRAL	NA	12	"ACRV1,CDON,CHEK1,DDX25,FAM118B,HYLS1,PATE1,PATE2,PATE3,PATE4,PUS3,RPUSD4"
TCGA.AA.A010.01A	11	125523594	125550553	6	0.0791	NEUTRAL	NA	2	"ACRV1,CHEK1"
TCGA.AA.A00L.01A	11	125523594	126081333	47	-0.0768	NEUTRAL	NA	11	"ACRV1,CDON,CHEK1,DDX25,HYLS1,PATE1,PATE2,PATE3,PATE4,PUS3,RPUSD4"
TCGA.AA.A00D.01A	11	125542446	125831567	21	-0.0316	NEUTRAL	NA	10	"ACRV1,CDON,CHEK1,DDX25,HYLS1,PATE1,PATE2,PATE3,PATE4,PUS3"
TCGA.AA.3850	11	125592122	125680692	33	-0.28035	NEUTRAL	NA	3	"PATE1,PATE2,PATE3"
TCGA.G4.6299	11	125635017	126641530	435	-0.0952	NEUTRAL	NA	15	"CDON,DCPS,DDX25,FAM118B,FOXRED1,HYLS1,KIRREL3,PATE2,PATE3,PATE4,PUS3,RPUSD4,SRPR,ST3GAL4,TIRAP"
TCGA.AA.A010.01A	11	125647238	125660356	6	0.2724	NEUTRAL	NA	2	"PATE2,PATE3"
TCGA.AG.A01W.01A	11	125649983	125651186	4	-0.2387	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	11	125665938	127838565	37	-0.3699	NEUTRAL	NA	13	"CDON,DCPS,DDX25,FAM118B,FOXRED1,HYLS1,KIRREL3,PATE4,PUS3,RPUSD4,SRPR,ST3GAL4,TIRAP"
TCGA.AA.3850	11	125698653	126701536	452	0.36415	NEUTRAL	NA	13	"CDON,DCPS,DDX25,FAM118B,FOXRED1,HYLS1,KIRREL3,PATE4,PUS3,RPUSD4,SRPR,ST3GAL4,TIRAP"
TCGA.AA.A00F.01A	11	125703183	125769212	5	0.144	NEUTRAL	NA	3	"HYLS1,PATE4,PUS3"
TCGA.AA.3941	11	125706001	126695459	447	0.0333	NEUTRAL	NA	13	"CDON,DCPS,DDX25,FAM118B,FOXRED1,HYLS1,KIRREL3,PATE4,PUS3,RPUSD4,SRPR,ST3GAL4,TIRAP"
TCGA.AA.A010.01A	11	125769212	126074078	33	-0.1375	NEUTRAL	NA	5	"CDON,DDX25,HYLS1,PUS3,RPUSD4"
TCGA.AG.4009.01A	11	125786870	125791096	3	-0.1843	NEUTRAL	NA	1	DDX25
TCGA.AG.3909.01A	11	125786870	125831567	6	-0.2031	NEUTRAL	NA	2	"CDON,DDX25"
TCGA.CK.5914.01A	11	125786870	125831567	6	-0.2426	NEUTRAL	NA	2	"CDON,DDX25"
TCGA.AG.A00C.01A	11	125791096	126145975	50	-1.00E-04	NEUTRAL	NA	6	"CDON,DDX25,FAM118B,FOXRED1,RPUSD4,SRPR"
TCGA.AG.4009.01A	11	125792649	126145173	48	0.3772	NEUTRAL	NA	6	"CDON,DDX25,FAM118B,FOXRED1,RPUSD4,SRPR"
TCGA.AA.A00F.01A	11	125830786	129746564	117	-0.2455	NEUTRAL	NA	19	"ARHGAP32,BARX2,C11orf45,CDON,DCPS,ETS1,FAM118B,FLI1,FOXRED1,KCNJ1,KCNJ5,KIRREL3,NFRKB,RPUSD4,SRPR,ST3GAL4,TIRAP,TMEM45B,TP53AIP1"
TCGA.AA.A00D.01A	11	125848142	125891096	16	-0.4055	NEUTRAL	NA	1	CDON
TCGA.A6.2681	11	125855465	134944769	3834	0.003	NEUTRAL	NA	39	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CDON,DCPS,ETS1,FAM118B,FLI1,FOXRED1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,RPUSD4,SNX19,SPATA19,SRPR,ST14,ST3GAL4,THYN1,TIRAP,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.A00N.01A	11	125893236	126124168	11	-0.4218	NEUTRAL	NA	3	"CDON,FAM118B,RPUSD4"
TCGA.AA.A00D.01A	11	125893236	134257391	290	0.0544	NEUTRAL	NA	39	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CDON,DCPS,ETS1,FAM118B,FLI1,FOXRED1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,RPUSD4,SNX19,SPATA19,SRPR,ST14,ST3GAL4,THYN1,TIRAP,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.3518	11	126012785	126833560	380	0.3568	NEUTRAL	NA	8	"DCPS,FAM118B,FOXRED1,KIRREL3,RPUSD4,SRPR,ST3GAL4,TIRAP"
TCGA.AG.3909.01A	11	126073361	126314827	55	-0.2597	NEUTRAL	NA	8	"DCPS,FAM118B,FOXRED1,KIRREL3,RPUSD4,SRPR,ST3GAL4,TIRAP"
TCGA.CK.5914.01A	11	126074078	126131262	11	-0.1761	NEUTRAL	NA	2	"FAM118B,RPUSD4"
TCGA.AA.A010.01A	11	126104843	126176413	31	-0.2853	NEUTRAL	NA	5	"DCPS,FAM118B,FOXRED1,SRPR,TIRAP"
TCGA.AA.A00L.01A	11	126104843	126283353	43	0.2416	NEUTRAL	NA	6	"DCPS,FAM118B,FOXRED1,SRPR,ST3GAL4,TIRAP"
TCGA.AG.A008.01A	11	126135605	126163476	20	0.171	NEUTRAL	NA	3	"FOXRED1,SRPR,TIRAP"
TCGA.AG.3611.01A	11	126136636	126147321	15	-0.3236	NEUTRAL	NA	2	"FOXRED1,SRPR"
TCGA.AG.A025.01A	11	126138532	134257391	330	-0.2164	NEUTRAL	NA	36	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,DCPS,ETS1,FLI1,FOXRED1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,SRPR,ST14,ST3GAL4,THYN1,TIRAP,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.A01L.01A	11	126145173	134257391	321	-0.0899	NEUTRAL	NA	35	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,DCPS,ETS1,FLI1,FOXRED1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,ST3GAL4,THYN1,TIRAP,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.4009.01A	11	126145641	126276338	13	-0.0819	NEUTRAL	NA	4	"DCPS,FOXRED1,ST3GAL4,TIRAP"
TCGA.AA.3815.01A	11	126145641	134257391	347	-0.0424	NEUTRAL	NA	35	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,DCPS,ETS1,FLI1,FOXRED1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,ST3GAL4,THYN1,TIRAP,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.A02E.01A	11	126145975	134257391	309	-0.3718	NEUTRAL	NA	35	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,DCPS,ETS1,FLI1,FOXRED1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,ST3GAL4,THYN1,TIRAP,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.A00C.01A	11	126146929	126147321	2	-0.358	NEUTRAL	NA	1	FOXRED1
TCGA.AG.3906.01A	11	126147321	126305124	23	0.3057	NEUTRAL	NA	5	"DCPS,FOXRED1,KIRREL3,ST3GAL4,TIRAP"
TCGA.AG.A015.01A	11	126147321	129753904	105	-0.1903	NEUTRAL	NA	15	"ARHGAP32,BARX2,C11orf45,DCPS,ETS1,FLI1,FOXRED1,KCNJ1,KCNJ5,KIRREL3,NFRKB,ST3GAL4,TIRAP,TMEM45B,TP53AIP1"
TCGA.A6.3808.01A	11	126160737	126299032	21	0.2069	NEUTRAL	NA	4	"DCPS,KIRREL3,ST3GAL4,TIRAP"
TCGA.AG.A00C.01A	11	126160737	126316607	25	0.3326	NEUTRAL	NA	4	"DCPS,KIRREL3,ST3GAL4,TIRAP"
TCGA.AA.A01Q.01A	11	126163476	126283803	16	-0.4052	NEUTRAL	NA	3	"DCPS,ST3GAL4,TIRAP"
TCGA.AG.A008.01A	11	126173969	126333034	25	-0.1939	NEUTRAL	NA	3	"DCPS,KIRREL3,ST3GAL4"
TCGA.AA.A02K.01A	11	126201249	126870299	30	0.0189	NEUTRAL	NA	3	"DCPS,KIRREL3,ST3GAL4"
TCGA.AA.A00N.01A	11	126201261	133402093	217	0.0107	NEUTRAL	NA	23	"ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,C11orf44,C11orf45,DCPS,ETS1,FLI1,KCNJ1,KCNJ5,KIRREL3,NFRKB,NTM,OPCML,PRDM10,SNX19,ST14,ST3GAL4,TMEM45B,TP53AIP1,ZBTB44"
TCGA.CK.5914.01A	11	126213155	126326206	22	-0.1159	NEUTRAL	NA	3	"DCPS,KIRREL3,ST3GAL4"
TCGA.AH.6897	11	126278562	134944769	3659	0.2734	NEUTRAL	NA	32	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,ST3GAL4,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.A00L.01A	11	126283803	129830729	88	0.0077	NEUTRAL	NA	13	"ARHGAP32,BARX2,C11orf45,ETS1,FLI1,KCNJ1,KCNJ5,KIRREL3,NFRKB,PRDM10,ST3GAL4,TMEM45B,TP53AIP1"
TCGA.AA.A01Q.01A	11	126294423	130057981	105	0.0817	NEUTRAL	NA	14	"APLP2,ARHGAP32,BARX2,C11orf45,ETS1,FLI1,KCNJ1,KCNJ5,KIRREL3,NFRKB,PRDM10,ST14,TMEM45B,TP53AIP1"
TCGA.AG.3906.01A	11	126306658	134182223	274	-0.0484	NEUTRAL	NA	29	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.A6.3808.01A	11	126314827	134257391	316	0.2238	NEUTRAL	NA	31	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.4009.01A	11	126318887	129743610	67	0.2632	NEUTRAL	NA	11	"ARHGAP32,BARX2,C11orf45,ETS1,FLI1,KCNJ1,KCNJ5,KIRREL3,NFRKB,TMEM45B,TP53AIP1"
TCGA.AG.A00C.01A	11	126318887	134252583	292	0.0356	NEUTRAL	NA	31	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.3522	11	126390057	134944769	3617	0.0299	NEUTRAL	NA	31	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.A008.01A	11	126391168	128675196	20	-0.4674	NEUTRAL	NA	3	"ETS1,FLI1,KIRREL3"
TCGA.G4.6299	11	126646484	127895886	524	0.2848	NEUTRAL	NA	1	KIRREL3
TCGA.NH.A6GA	11	126701536	134944769	3441	-0.0191	NEUTRAL	NA	31	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.3850	11	126702153	127165952	229	-0.03685	NEUTRAL	NA	1	KIRREL3
TCGA.AA.3811	11	126709399	128477917	709	-0.0754	NEUTRAL	NA	2	"ETS1,KIRREL3"
TCGA.AA.3941	11	126711505	126783877	27	-0.1806	NEUTRAL	NA	1	KIRREL3
TCGA.AA.3518	11	126833893	134944769	3371	0.009	NEUTRAL	NA	31	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.3858	11	126885798	134944769	3353	0.2039	NEUTRAL	NA	30	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.3890	11	126938630	134944769	3313	-0.0089	NEUTRAL	NA	30	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.3727	11	127043295	134944769	3274	-0.0161	NEUTRAL	NA	30	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.3850	11	127173530	128144863	341	-0.41415	NEUTRAL	NA	0	None
TCGA.AH.6643	11	127504075	134944769	3067	-0.3932	NEUTRAL	NA	30	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.EI.7004	11	127705342	128375223	254	0.0507	NEUTRAL	NA	1	ETS1
TCGA.BM.6198	11	127705342	134944769	3019	0.03745	NEUTRAL	NA	30	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.A020	11	127771015	132067015	1756	-0.108	NEUTRAL	NA	19	"ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,C11orf44,C11orf45,ETS1,FLI1,KCNJ1,KCNJ5,NFRKB,NTM,PRDM10,SNX19,ST14,TMEM45B,TP53AIP1,ZBTB44"
TCGA.AG.A01W.01A	11	127855260	128312576	26	-0.0511	NEUTRAL	NA	0	None
TCGA.G4.6299	11	128132006	130669044	893	0.2574	NEUTRAL	NA	17	"ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,C11orf44,C11orf45,ETS1,FLI1,KCNJ1,KCNJ5,NFRKB,PRDM10,ST14,TMEM45B,TP53AIP1,ZBTB44"
TCGA.AA.3941	11	128150038	128277234	58	-0.0991	NEUTRAL	NA	0	None
TCGA.AA.3850	11	128150038	128986326	374	0.18655	NEUTRAL	NA	7	"ARHGAP32,C11orf45,ETS1,FLI1,KCNJ1,KCNJ5,TP53AIP1"
TCGA.AA.3941	11	128287849	128930044	298	-0.1518	NEUTRAL	NA	7	"ARHGAP32,C11orf45,ETS1,FLI1,KCNJ1,KCNJ5,TP53AIP1"
TCGA.AA.A010.01A	11	128332214	128360300	7	-0.2134	NEUTRAL	NA	1	ETS1
TCGA.AA.A02K.01A	11	128332215	128680315	19	-0.292	NEUTRAL	NA	2	"ETS1,FLI1"
TCGA.AG.A01W.01A	11	128343982	128751090	25	0.3615	NEUTRAL	NA	3	"ETS1,FLI1,KCNJ1"
TCGA.EI.7004	11	128378910	134944769	2759	-0.344	NEUTRAL	NA	30	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.3811	11	128478325	128929165	213	0.2512	NEUTRAL	NA	6	"ARHGAP32,C11orf45,FLI1,KCNJ1,KCNJ5,TP53AIP1"
TCGA.CK.5914.01A	11	128637966	128846392	19	-0.368	NEUTRAL	NA	6	"ARHGAP32,C11orf45,FLI1,KCNJ1,KCNJ5,TP53AIP1"
TCGA.AG.3909.01A	11	128642630	130064488	114	-0.0323	NEUTRAL	NA	12	"APLP2,ARHGAP32,BARX2,C11orf45,FLI1,KCNJ1,KCNJ5,NFRKB,PRDM10,ST14,TMEM45B,TP53AIP1"
TCGA.AG.A008.01A	11	128677015	134253553	275	-0.1497	NEUTRAL	NA	29	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AA.A02K.01A	11	128709013	134257392	303	-0.0116	NEUTRAL	NA	28	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.AG.A01W.01A	11	128811820	133301974	158	-0.0051	NEUTRAL	NA	15	"ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,C11orf44,NFRKB,NTM,OPCML,PRDM10,SNX19,ST14,TMEM45B,TP53AIP1,ZBTB44"
TCGA.AA.A010.01A	11	128846392	128936579	14	-0.3361	NEUTRAL	NA	1	ARHGAP32
TCGA.CK.5914.01A	11	128848617	128963473	14	0.3218	NEUTRAL	NA	1	ARHGAP32
TCGA.AA.3811	11	128989827	134944769	2492	0.1221	NEUTRAL	NA	24	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,TMEM45B,VPS26B,ZBTB44"
TCGA.CK.5914.01A	11	128993287	130078267	88	-0.38	NEUTRAL	NA	7	"APLP2,ARHGAP32,BARX2,NFRKB,PRDM10,ST14,TMEM45B"
TCGA.AA.3941	11	128998079	130747230	555	-0.053	NEUTRAL	NA	12	"ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,C11orf44,NFRKB,PRDM10,SNX19,ST14,TMEM45B,ZBTB44"
TCGA.AA.3850	11	128998079	131688044	1052	0.22405	NEUTRAL	NA	13	"ADAMTS15,ADAMTS8,APLP2,ARHGAP32,BARX2,C11orf44,NFRKB,NTM,PRDM10,SNX19,ST14,TMEM45B,ZBTB44"
TCGA.DT.5265	11	129494658	131565963	837	0.0957	NEUTRAL	NA	11	"ADAMTS15,ADAMTS8,APLP2,C11orf44,NFRKB,NTM,PRDM10,SNX19,ST14,TMEM45B,ZBTB44"
TCGA.AG.4009.01A	11	129743976	129775486	20	-0.1059	NEUTRAL	NA	2	"NFRKB,PRDM10"
TCGA.AA.A00F.01A	11	129747153	129775486	15	0.0928	NEUTRAL	NA	2	"NFRKB,PRDM10"
TCGA.AG.A015.01A	11	129762572	134176969	177	-0.1168	NEUTRAL	NA	19	"ACAD8,ADAMTS15,ADAMTS8,APLP2,C11orf44,GLB1L3,IGSF9B,JAM3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,VPS26B,ZBTB44"
TCGA.AG.4009.01A	11	129780340	134076445	144	0.2489	NEUTRAL	NA	14	"ADAMTS15,ADAMTS8,APLP2,C11orf44,IGSF9B,JAM3,NCAPD3,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,ZBTB44"
TCGA.AA.A00F.01A	11	129780340	134257391	175	-0.1597	NEUTRAL	NA	20	"ACAD8,ADAMTS15,ADAMTS8,APLP2,B3GAT1,C11orf44,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,VPS26B,ZBTB44"
TCGA.AA.A00L.01A	11	129979283	130068821	29	0.3711	NEUTRAL	NA	2	"APLP2,ST14"
TCGA.AA.A01Q.01A	11	130058418	130079350	14	-0.5085	NEUTRAL	NA	1	ST14
TCGA.AA.A00L.01A	11	130069829	134257391	133	-0.0015	NEUTRAL	NA	18	"ACAD8,ADAMTS15,ADAMTS8,B3GAT1,C11orf44,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,NTM,OPCML,SNX19,SPATA19,ST14,THYN1,VPS26B,ZBTB44"
TCGA.AG.3909.01A	11	130078267	131781334	33	-0.1861	NEUTRAL	NA	7	"ADAMTS15,ADAMTS8,C11orf44,NTM,SNX19,ST14,ZBTB44"
TCGA.CK.5914.01A	11	130079350	133402093	53	0.1179	NEUTRAL	NA	8	"ADAMTS15,ADAMTS8,C11orf44,NTM,OPCML,SNX19,ST14,ZBTB44"
TCGA.AA.A01Q.01A	11	130130791	134115307	98	0.0719	NEUTRAL	NA	12	"ADAMTS15,ADAMTS8,C11orf44,IGSF9B,JAM3,NCAPD3,NTM,OPCML,SNX19,SPATA19,VPS26B,ZBTB44"
TCGA.AA.A010.01A	11	130318849	133402093	38	0.2047	NEUTRAL	NA	5	"ADAMTS15,C11orf44,NTM,OPCML,SNX19"
TCGA.G4.6299	11	130674668	134896147	1968	-0.0625	NEUTRAL	NA	13	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,NTM,OPCML,SNX19,SPATA19,THYN1,VPS26B"
TCGA.AA.3941	11	130748130	133492935	1326	-0.3883	NEUTRAL	NA	3	"NTM,OPCML,SNX19"
TCGA.AA.3850	11	131726845	134944769	1420	0.13415	NEUTRAL	NA	12	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,NTM,OPCML,SPATA19,THYN1,VPS26B"
TCGA.AA.3967.01A	11	132398904	134257391	123	-0.5105	NEUTRAL	NA	11	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,OPCML,SPATA19,THYN1,VPS26B"
TCGA.AA.3867	11	132399271	134925450	1082	0.1328	NEUTRAL	NA	11	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,OPCML,SPATA19,THYN1,VPS26B"
TCGA.AG.3909.01A	11	132812784	134027792	35	-0.4595	NEUTRAL	NA	5	"IGSF9B,JAM3,NCAPD3,OPCML,SPATA19"
TCGA.AG.A01W.01A	11	133319299	133762602	102	0.2176	NEUTRAL	NA	2	"OPCML,SPATA19"
TCGA.AA.3558	11	133451541	134944769	633	-0.104	NEUTRAL	NA	10	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,SPATA19,THYN1,VPS26B"
TCGA.AA.3941	11	133495290	134608078	438	-0.0567	NEUTRAL	NA	10	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,SPATA19,THYN1,VPS26B"
TCGA.AG.3575	11	133687573	134299329	201	0.3313	NEUTRAL	NA	10	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,SPATA19,THYN1,VPS26B"
TCGA.AM.5820	11	133839124	134235864	113	0.0693	NEUTRAL	NA	7	"ACAD8,GLB1L2,GLB1L3,JAM3,NCAPD3,THYN1,VPS26B"
TCGA.AA.A00N.01A	11	134018962	134073592	22	0.0659	NEUTRAL	NA	2	"JAM3,NCAPD3"
TCGA.AG.3909.01A	11	134028173	134080122	22	0.1487	NEUTRAL	NA	1	NCAPD3
TCGA.AF.3914.01A	11	134029745	134244812	80	-0.1812	NEUTRAL	NA	6	"ACAD8,GLB1L2,GLB1L3,NCAPD3,THYN1,VPS26B"
TCGA.CK.5914.01A	11	134047066	134076445	13	0.2109	NEUTRAL	NA	1	NCAPD3
TCGA.AG.4009.01A	11	134078715	134243562	57	-0.4691	NEUTRAL	NA	6	"ACAD8,GLB1L2,GLB1L3,NCAPD3,THYN1,VPS26B"
TCGA.AA.A010.01A	11	134114815	134162975	27	-0.4346	NEUTRAL	NA	4	"ACAD8,GLB1L3,THYN1,VPS26B"
TCGA.AA.A01K.01A	11	134118268	134252583	48	-0.3945	NEUTRAL	NA	5	"ACAD8,B3GAT1,GLB1L2,GLB1L3,THYN1"
TCGA.AA.A01Q.01A	11	134130910	134212611	9	-0.0959	NEUTRAL	NA	3	"ACAD8,GLB1L2,GLB1L3"
TCGA.AA.A004.01A	11	134134732	134252583	32	0.0458	NEUTRAL	NA	4	"ACAD8,B3GAT1,GLB1L2,GLB1L3"
TCGA.AG.3909.01A	11	134176969	134182669	6	0.2912	NEUTRAL	NA	1	GLB1L3
TCGA.AA.A00N.01A	11	134179482	134184173	8	0.0235	NEUTRAL	NA	1	GLB1L3
TCGA.AH.6644	11	134208907	134944769	368	-0.088	NEUTRAL	NA	2	"B3GAT1,GLB1L2"
TCGA.AG.A015.01A	11	134212611	134252583	17	0.0848	NEUTRAL	NA	2	"B3GAT1,GLB1L2"
TCGA.AG.3906.01A	11	134237097	134257391	15	0.0461	NEUTRAL	NA	2	"B3GAT1,GLB1L2"
TCGA.AG.4009.01A	11	134243992	134257391	7	-0.0488	NEUTRAL	NA	2	"B3GAT1,GLB1L2"
TCGA.AM.5820	11	134293442	134944769	334	0.192	NEUTRAL	NA	0	None
TCGA.AG.3575	11	134300920	134944769	325	0.3087	NEUTRAL	NA	0	None
TCGA.D5.7000	11	134409651	134585055	93	-0.0313	NEUTRAL	NA	0	None
TCGA.D5.7000	11	134607870	134944769	175	-0.0767	NEUTRAL	NA	0	None
TCGA.A6.5667	11	134608078	134944769	174	0.1376	NEUTRAL	NA	0	None
TCGA.AA.3941	11	134615425	134944769	172	-0.2714	NEUTRAL	NA	0	None
TCGA.DM.A28F	11	134818567	134944769	58	0.3781	NEUTRAL	NA	0	None
TCGA.F5.6812	11	134891346	134944769	24	0.0519	NEUTRAL	NA	0	None
TCGA.G4.6299	11	134900468	134944769	20	0.2757	NEUTRAL	NA	0	None
TCGA.WS.AB45	11	134905780	134944769	17	-0.2813	NEUTRAL	NA	0	None
TCGA.T9.A92H	11	134926753	134944769	11	0.2002	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	46275	2576601	244	-0.2605	NEUTRAL	NA	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AG.A036.01A	12	46275	6842575	771	-0.1814	NEUTRAL	NA	64	"ACRBP,ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD9,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LPAR5,LRTM2,LTBR,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,PARP11,PIANP,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.DC.6160.01A	12	117653	150477	10	-0.3254	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	12	117653	10464203	1301	0.3668	NEUTRAL	NA	136	Too-Many
TCGA.F5.6811.01A	12	117653	21067014	1804	0.0105	NEUTRAL	NA	215	Too-Many
TCGA.DC.6160.01A	12	170494	132288755	10023	0.0681	NEUTRAL	NA	978	Too-Many
TCGA.AA.A02K.01A	12	176014	311858	25	0.3401	NEUTRAL	NA	2	"IQSEC3,SLC6A12"
TCGA.RU.A8FL	12	192219	225698	11	-0.0662	NEUTRAL	NA	1	IQSEC3
TCGA.AA.3976	12	192219	250129	18	0.2947	NEUTRAL	NA	1	IQSEC3
TCGA.A6.2678	12	192219	258417	28	-0.1183	NEUTRAL	NA	1	IQSEC3
TCGA.AF.3911	12	192219	263838	35	0.111	NEUTRAL	NA	1	IQSEC3
TCGA.3L.AA1B	12	192219	310570	49	-0.2005	NEUTRAL	NA	2	"IQSEC3,SLC6A12"
TCGA.AA.3819	12	192219	417632	87	-0.0084	NEUTRAL	NA	4	"IQSEC3,KDM5A,SLC6A12,SLC6A13"
TCGA.AG.3881	12	192219	771676	209	-0.2833	NEUTRAL	NA	7	"B4GALNT3,CCDC77,IQSEC3,KDM5A,NINJ2,SLC6A12,SLC6A13"
TCGA.DY.A1DD	12	192219	1042102	274	0.013	NEUTRAL	NA	9	"B4GALNT3,CCDC77,IQSEC3,KDM5A,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1"
TCGA.D5.6539	12	192219	1165725	300	0.2302	NEUTRAL	NA	10	"B4GALNT3,CCDC77,ERC1,IQSEC3,KDM5A,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1"
TCGA.AA.3530	12	192219	1888672	490	0.1937	NEUTRAL	NA	13	"ADIPOR2,B4GALNT3,CCDC77,ERC1,FBXL14,IQSEC3,KDM5A,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AG.3591	12	192219	2235627	641	-0.2669	NEUTRAL	NA	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AH.6644	12	192219	2235627	638	-0.0741	NEUTRAL	NA	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.D5.6532	12	192219	2235627	640	-0.0165	NEUTRAL	NA	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.NH.A50U	12	192219	3163546	965	0.3472	NEUTRAL	NA	24	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TULP3,WNK1,WNT5B"
TCGA.CK.6748	12	192219	3303132	1025	0.3086	NEUTRAL	NA	25	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.A6.6652	12	192219	4543486	1606	-0.0102	NEUTRAL	NA	32	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,PARP11,PRMT8,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.DC.4745	12	192219	4871454	1727	-0.0724	NEUTRAL	NA	38	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AZ.4323	12	192219	5032639	1812	0.3558	NEUTRAL	NA	40	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AG.3584	12	192219	5176840	1924	-0.0578	NEUTRAL	NA	41	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AA.3811	12	192219	5209047	1946	0.1558	NEUTRAL	NA	41	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.CM.5862	12	192219	5818281	2323	-0.2043	NEUTRAL	NA	43	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.G4.6322	12	192219	6325717	2552	-0.0282	NEUTRAL	NA	45	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD9,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,VWF,WNK1,WNT5B"
TCGA.CA.6715	12	192219	6885075	2661	-0.0098	NEUTRAL	NA	67	"ACRBP,ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD9,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,PARP11,PIANP,PLEKHG6,PRMT8,PTMS,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.G4.6626	12	192219	6926362	2696	-0.054	NEUTRAL	NA	68	"ACRBP,ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,PARP11,PIANP,PLEKHG6,PRMT8,PTMS,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AF.6655	12	192219	7120835	2734	-0.0254	NEUTRAL	NA	83	"ACRBP,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AA.A01T	12	192219	7368181	2770	0.077	NEUTRAL	NA	89	"ACRBP,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AA.3850	12	192219	7462683	2793	0.26375	NEUTRAL	NA	90	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.F4.6461	12	192219	7799138	2862	-0.0336	NEUTRAL	NA	92	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.A6.2686	12	192219	7970720	2897	0.2899	NEUTRAL	NA	99	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,APOBEC1,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4C,CLSTN3,COPS7A,CRACR2A,DCP1B,DPPA3,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC2A14,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.DC.6158	12	192219	7970720	2893	-0.2155	NEUTRAL	NA	99	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,APOBEC1,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4C,CLSTN3,COPS7A,CRACR2A,DCP1B,DPPA3,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC2A14,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AF.3913	12	192219	8017817	2902	-0.0365	NEUTRAL	NA	99	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,APOBEC1,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4C,CLSTN3,COPS7A,CRACR2A,DCP1B,DPPA3,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC2A14,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.A6.5661	12	192219	8762962	3064	-0.2737	NEUTRAL	NA	110	Too-Many
TCGA.EI.6508	12	192219	8976779	3097	-0.0349	NEUTRAL	NA	113	Too-Many
TCGA.AA.3532	12	192219	9265795	3201	0.3127	NEUTRAL	NA	117	Too-Many
TCGA.CM.6677	12	192219	9306994	3199	0.0038	NEUTRAL	NA	118	Too-Many
TCGA.AA.A03J	12	192219	9579108	3223	0.0806	NEUTRAL	NA	118	Too-Many
TCGA.QL.A97D	12	192219	9743798	3313	0.1587	NEUTRAL	NA	118	Too-Many
TCGA.4N.A93T	12	192219	9888552	3382	-0.0774	NEUTRAL	NA	121	Too-Many
TCGA.DC.6157	12	192219	10399107	3551	-0.1073	NEUTRAL	NA	135	Too-Many
TCGA.AF.4110	12	192219	10876804	3748	0.2527	NEUTRAL	NA	145	Too-Many
TCGA.AA.3989	12	192219	10893991	3752	0.0737	NEUTRAL	NA	145	Too-Many
TCGA.AA.3488	12	192219	10914096	3761	0.0153	NEUTRAL	NA	145	Too-Many
TCGA.AA.3982	12	192219	10926232	3761	0.1601	NEUTRAL	NA	145	Too-Many
TCGA.G4.6586	12	192219	11380186	3856	-0.024	NEUTRAL	NA	163	Too-Many
TCGA.A6.2671	12	192219	11504090	3881	-0.2747	NEUTRAL	NA	165	Too-Many
TCGA.AA.3556	12	192219	11504090	3862	-0.0245	NEUTRAL	NA	165	Too-Many
TCGA.CI.6620	12	192219	11504090	3877	-0.4584	NEUTRAL	NA	165	Too-Many
TCGA.D5.6898	12	192219	11504090	3874	-0.3409	NEUTRAL	NA	165	Too-Many
TCGA.DM.A1DA	12	192219	11504090	3883	-0.1375	NEUTRAL	NA	165	Too-Many
TCGA.AA.3867	12	192219	11519427	3876	-0.0571	NEUTRAL	NA	166	Too-Many
TCGA.F5.6702	12	192219	11519427	3871	-0.1496	NEUTRAL	NA	166	Too-Many
TCGA.CM.5864	12	192219	11608775	3910	0.3616	NEUTRAL	NA	167	Too-Many
TCGA.A6.6653	12	192219	11899972	4031	-0.0189	NEUTRAL	NA	168	Too-Many
TCGA.AA.3977	12	192219	12058410	4124	0.099	NEUTRAL	NA	168	Too-Many
TCGA.A6.5662	12	192219	12440377	4253	0.0641	NEUTRAL	NA	170	Too-Many
TCGA.DC.4749	12	192219	12922322	4419	-0.0312	NEUTRAL	NA	177	Too-Many
TCGA.EI.6883	12	192219	12942889	4410	0.0042	NEUTRAL	NA	177	Too-Many
TCGA.CA.5254	12	192219	13229305	4520	-0.0363	NEUTRAL	NA	182	Too-Many
TCGA.G4.6302	12	192219	13269864	4544	-0.0117	NEUTRAL	NA	183	Too-Many
TCGA.CA.5255	12	192219	13331337	4544	0.1313	NEUTRAL	NA	183	Too-Many
TCGA.G4.6315	12	192219	15598978	5467	-0.1855	NEUTRAL	NA	200	Too-Many
TCGA.G4.6295	12	192219	15984818	5571	0.0103	NEUTRAL	NA	201	Too-Many
TCGA.AF.2692	12	192219	17749250	6078	-0.4342	NEUTRAL	NA	206	Too-Many
TCGA.CK.6746	12	192219	20130962	6844	0.0133	NEUTRAL	NA	212	Too-Many
TCGA.AZ.4614	12	192219	20235252	6808	-0.0194	NEUTRAL	NA	212	Too-Many
TCGA.D5.6535	12	192219	20957568	7122	-0.3446	NEUTRAL	NA	214	Too-Many
TCGA.AA.3872	12	192219	21076144	7145	0.076	NEUTRAL	NA	215	Too-Many
TCGA.AA.3858	12	192219	23809852	8020	-0.0682	NEUTRAL	NA	232	Too-Many
TCGA.F4.6463	12	192219	24433067	8246	-0.0057	NEUTRAL	NA	232	Too-Many
TCGA.QG.A5YW	12	192219	24920665	8386	-0.0461	NEUTRAL	NA	232	Too-Many
TCGA.AG.3575	12	192219	25447752	8693	-0.0024	NEUTRAL	NA	238	Too-Many
TCGA.AF.A56K	12	192219	25994226	8883	-0.0345	NEUTRAL	NA	239	Too-Many
TCGA.DT.5265	12	192219	26595457	9175	0.1108	NEUTRAL	NA	243	Too-Many
TCGA.F5.6465	12	192219	26704126	9237	-0.0194	NEUTRAL	NA	243	Too-Many
TCGA.D5.6926	12	192219	27718759	9527	-0.1433	NEUTRAL	NA	252	Too-Many
TCGA.G4.6314	12	192219	27788020	9598	0.1243	NEUTRAL	NA	252	Too-Many
TCGA.CM.6170	12	192219	28493730	9799	-0.1992	NEUTRAL	NA	258	Too-Many
TCGA.DY.A1DC	12	192219	29091851	10022	0.0048	NEUTRAL	NA	258	Too-Many
TCGA.D5.6533	12	192219	29135807	10053	-0.2079	NEUTRAL	NA	258	Too-Many
TCGA.CA.5797	12	192219	30235580	10512	0.005	NEUTRAL	NA	262	Too-Many
TCGA.AG.A020	12	192219	30409748	10636	0.0434	NEUTRAL	NA	262	Too-Many
TCGA.QG.A5YX	12	192219	31095780	10885	-0.0089	NEUTRAL	NA	265	Too-Many
TCGA.AA.3841	12	192219	31113610	11002	0.0281	NEUTRAL	NA	265	Too-Many
TCGA.F5.6863	12	192219	31129129	10979	-0.0053	NEUTRAL	NA	265	Too-Many
TCGA.AG.3725	12	192219	31261697	11050	0.0043	NEUTRAL	NA	266	Too-Many
TCGA.DM.A28K	12	192219	31346517	11039	0.0047	NEUTRAL	NA	266	Too-Many
TCGA.AA.3516	12	192219	31906671	11222	0.0054	NEUTRAL	NA	270	Too-Many
TCGA.AA.3693	12	192219	31906671	11242	0.0209	NEUTRAL	NA	270	Too-Many
TCGA.AG.3581	12	192219	31906671	11238	0.0044	NEUTRAL	NA	270	Too-Many
TCGA.DC.5337	12	192219	31906671	11190	-0.004	NEUTRAL	NA	270	Too-Many
TCGA.A6.2681	12	192219	33185987	11736	-0.4847	NEUTRAL	NA	277	Too-Many
TCGA.AA.3986	12	192219	33285052	11767	0.0052	NEUTRAL	NA	277	Too-Many
TCGA.AG.3885	12	192219	33293906	11780	-0.0152	NEUTRAL	NA	277	Too-Many
TCGA.DM.A1HA	12	192219	33302437	11783	-0.0091	NEUTRAL	NA	277	Too-Many
TCGA.G4.6299	12	192219	33865196	11952	-0.0312	NEUTRAL	NA	278	Too-Many
TCGA.CA.6716	12	192219	33871869	11933	0.0157	NEUTRAL	NA	278	Too-Many
TCGA.AG.A01Y	12	192219	34337878	11991	0.0296	NEUTRAL	NA	279	Too-Many
TCGA.AA.3712	12	192219	34341237	12033	0.2768	NEUTRAL	NA	279	Too-Many
TCGA.AA.3666	12	192219	34460561	12057	-0.416	NEUTRAL	NA	279	Too-Many
TCGA.AD.6963	12	192219	34474791	12043	0.3292	NEUTRAL	NA	279	Too-Many
TCGA.CM.6679	12	192219	34760330	12031	-0.39145	NEUTRAL	NA	279	Too-Many
TCGA.AA.3812	12	192219	37857750	12074	0.2665	NEUTRAL	NA	279	Too-Many
TCGA.AA.3949	12	192219	37857750	12057	0.1565	NEUTRAL	NA	279	Too-Many
TCGA.BM.6198	12	192219	38502840	12101	0.02425	NEUTRAL	NA	279	Too-Many
TCGA.EI.6507	12	192219	43200915	13530	0.3476	NEUTRAL	NA	294	Too-Many
TCGA.F5.6464	12	192219	43499351	13662	-0.0106	NEUTRAL	NA	294	Too-Many
TCGA.DC.6155	12	192219	44034671	13757	-0.3742	NEUTRAL	NA	295	Too-Many
TCGA.AG.3742	12	192219	44250799	13778	-0.0064	NEUTRAL	NA	299	Too-Many
TCGA.CI.6624	12	192219	44315761	13874	0.0961	NEUTRAL	NA	299	Too-Many
TCGA.SS.A7HO	12	192219	44388399	13921	-0.3061	NEUTRAL	NA	299	Too-Many
TCGA.AA.3860	12	192219	44736012	13996	0.0258	NEUTRAL	NA	299	Too-Many
TCGA.AU.6004	12	192219	47613283	14640	0.0094	NEUTRAL	NA	309	Too-Many
TCGA.DM.A1HB	12	192219	53191936	15956	-0.0028	NEUTRAL	NA	421	Too-Many
TCGA.A6.6654	12	192219	54754863	16595	0.0752	NEUTRAL	NA	465	Too-Many
TCGA.D5.6929	12	192219	55525831	16868	0.2517	NEUTRAL	NA	478	Too-Many
TCGA.QG.A5Z1	12	192219	57064544	17044	0.0602	NEUTRAL	NA	537	Too-Many
TCGA.AA.3864	12	192219	57729888	17254	0.0231	NEUTRAL	NA	555	Too-Many
TCGA.AG.4008	12	192219	61131420	18115	0.0356	NEUTRAL	NA	583	Too-Many
TCGA.AU.3779	12	192219	64173010	19170	0.0451	NEUTRAL	NA	589	Too-Many
TCGA.AA.3544	12	192219	65644423	19501	1.00E-04	NEUTRAL	NA	600	Too-Many
TCGA.EI.7004	12	192219	69466940	20897	0.0076	NEUTRAL	NA	619	Too-Many
TCGA.AA.3846	12	192219	69480074	20913	0	NEUTRAL	NA	619	Too-Many
TCGA.D5.5539	12	192219	69902185	21059	-0.017	NEUTRAL	NA	623	Too-Many
TCGA.CM.6675	12	192219	71246303	21578	0.0143	NEUTRAL	NA	632	Too-Many
TCGA.AG.3732	12	192219	72899887	22074	0.0224	NEUTRAL	NA	641	Too-Many
TCGA.AA.3870	12	192219	73705091	22348	0	NEUTRAL	NA	641	Too-Many
TCGA.AA.3502	12	192219	76110348	22970	0.05	NEUTRAL	NA	648	Too-Many
TCGA.AA.3842	12	192219	78346578	23757	0.062	NEUTRAL	NA	656	Too-Many
TCGA.A6.A56B	12	192219	79130632	23901	0.0239	NEUTRAL	NA	656	Too-Many
TCGA.AA.3968	12	192219	80828112	24406	0.0344	NEUTRAL	NA	660	Too-Many
TCGA.A6.2677	12	192219	83166955	22955	-0.0847	NEUTRAL	NA	669	Too-Many
TCGA.AA.3531	12	192219	83268607	25094	0.0049	NEUTRAL	NA	669	Too-Many
TCGA.AA.3955	12	192219	83856753	25263	0.0033	NEUTRAL	NA	669	Too-Many
TCGA.AA.A03F	12	192219	85749312	25753	0.0461	NEUTRAL	NA	673	Too-Many
TCGA.AA.3494	12	192219	93958077	27879	0.2719	NEUTRAL	NA	701	Too-Many
TCGA.AY.5543	12	192219	94227000	27782	0.013	NEUTRAL	NA	703	Too-Many
TCGA.AA.3492	12	192219	101536560	30519	0.005	NEUTRAL	NA	736	Too-Many
TCGA.AY.A71X	12	192219	103495150	31132	0.0067	NEUTRAL	NA	752	Too-Many
TCGA.AA.3851	12	192219	103856907	31207	0.3185	NEUTRAL	NA	753	Too-Many
TCGA.A6.2672	12	192219	108515531	33048	0.0585	NEUTRAL	NA	783	Too-Many
TCGA.A6.5665	12	192219	108696849	33197	0.085	NEUTRAL	NA	785	Too-Many
TCGA.AA.3549	12	192219	110260701	33759	0.019	NEUTRAL	NA	806	Too-Many
TCGA.A6.A567	12	192219	112817782	33860	-0.1007	NEUTRAL	NA	838	Too-Many
TCGA.F5.6812	12	192219	113124576	34087	-0.1593	NEUTRAL	NA	840	Too-Many
TCGA.AA.3966	12	192219	113979529	34330	0.0723	NEUTRAL	NA	856	Too-Many
TCGA.G5.6572	12	192219	114615783	34676	-0.0183	NEUTRAL	NA	857	Too-Many
TCGA.EI.6510	12	192219	114628139	34681	0.3522	NEUTRAL	NA	857	Too-Many
TCGA.D5.6924	12	192219	118625250	36421	0.074	NEUTRAL	NA	874	Too-Many
TCGA.AA.3979	12	192219	121048934	37076	-0.0607	NEUTRAL	NA	897	Too-Many
TCGA.DY.A1DF	12	192219	121859918	37459	-0.5026	NEUTRAL	NA	910	Too-Many
TCGA.AA.3664	12	192219	122494844	37567	0.0098	NEUTRAL	NA	920	Too-Many
TCGA.EI.7002	12	192219	129228885	39969	0.2252	NEUTRAL	NA	968	Too-Many
TCGA.F4.6704	12	192219	129231075	39997	-0.0401	NEUTRAL	NA	968	Too-Many
TCGA.EI.6509	12	192219	129334813	40119	-0.1053	NEUTRAL	NA	969	Too-Many
TCGA.AA.3681	12	192219	131558361	41307	0.3373	NEUTRAL	NA	977	Too-Many
TCGA.AZ.4681	12	192219	132009175	41467	-0.0028	NEUTRAL	NA	977	Too-Many
TCGA.4T.AA8H	12	192219	133777644	41755	0.3572	NEUTRAL	NA	1001	Too-Many
TCGA.5M.AAT4	12	192219	133777644	41759	-0.0886	NEUTRAL	NA	1001	Too-Many
TCGA.5M.AAT5	12	192219	133777644	41758	-0.0011	NEUTRAL	NA	1001	Too-Many
TCGA.5M.AAT6	12	192219	133777644	41753	0.0093	NEUTRAL	NA	1001	Too-Many
TCGA.5M.AATA	12	192219	133777644	41734	0.0075	NEUTRAL	NA	1001	Too-Many
TCGA.5M.AATE	12	192219	133777644	41761	-0.0592	NEUTRAL	NA	1001	Too-Many
TCGA.A6.2674	12	192219	133777644	41748	0	NEUTRAL	NA	1001	Too-Many
TCGA.A6.2675	12	192219	133777644	41467	-0.0153	NEUTRAL	NA	1001	Too-Many
TCGA.A6.2679	12	192219	133777644	41725	0.1533	NEUTRAL	NA	1001	Too-Many
TCGA.A6.2680	12	192219	133777644	41697	-0.0238	NEUTRAL	NA	1001	Too-Many
TCGA.A6.2682	12	192219	133777644	41028	0.1096	NEUTRAL	NA	1001	Too-Many
TCGA.A6.2683	12	192219	133777644	41720	0	NEUTRAL	NA	1001	Too-Many
TCGA.A6.2684	12	192219	133777644	38404	0	NEUTRAL	NA	1001	Too-Many
TCGA.A6.2685	12	192219	133777644	41690	0	NEUTRAL	NA	1001	Too-Many
TCGA.A6.3809	12	192219	133777644	38407	0.3436	NEUTRAL	NA	1001	Too-Many
TCGA.A6.4105	12	192219	133777644	41768	0.2805	NEUTRAL	NA	1001	Too-Many
TCGA.A6.4107	12	192219	133777644	41742	0.0674	NEUTRAL	NA	1001	Too-Many
TCGA.A6.5656	12	192219	133777644	41604	0.0007	NEUTRAL	NA	1001	Too-Many
TCGA.A6.5657	12	192219	133777644	41676	0	NEUTRAL	NA	1001	Too-Many
TCGA.A6.5659	12	192219	133777644	38356	-0.076	NEUTRAL	NA	1001	Too-Many
TCGA.A6.5660	12	192219	133777644	41611	-0.0395	NEUTRAL	NA	1001	Too-Many
TCGA.A6.5664	12	192219	133777644	41667	0.2488	NEUTRAL	NA	1001	Too-Many
TCGA.A6.5666	12	192219	133777644	41716	-0.0009	NEUTRAL	NA	1001	Too-Many
TCGA.A6.5667	12	192219	133777644	41738	-0.0123	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6137	12	192219	133777644	41767	-0.0166	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6138	12	192219	133777644	41765	-0.0068	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6140	12	192219	133777644	41770	-0.0318	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6141	12	192219	133777644	41730	-0.0023	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6142	12	192219	133777644	41758	0.1098	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6648	12	192219	133777644	41761	-0.0014	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6649	12	192219	133777644	41758	0.0082	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6650	12	192219	133777644	38364	0.3291	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6651	12	192219	133777644	41594	0.1296	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6781	12	192219	133777644	38339	0	NEUTRAL	NA	1001	Too-Many
TCGA.A6.6782	12	192219	133777644	41608	-0.0786	NEUTRAL	NA	1001	Too-Many
TCGA.A6.A565	12	192219	133777644	41501	-0.0002	NEUTRAL	NA	1001	Too-Many
TCGA.A6.A566	12	192219	133777644	41443	0.2663	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3489	12	192219	133777644	41621	-0.0135	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3495	12	192219	133777644	41742	0	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3496	12	192219	133777644	41629	-0.002	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3510	12	192219	133777644	41727	0.0013	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3511	12	192219	133777644	41677	-0.0403	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3514	12	192219	133777644	41739	0	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3517	12	192219	133777644	41723	0.0073	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3518	12	192219	133777644	41665	-0.0002	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3519	12	192219	133777644	41751	0.0004	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3522	12	192219	133777644	41737	0.0039	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3526	12	192219	133777644	41745	0	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3527	12	192219	133777644	41742	-0.002	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3529	12	192219	133777644	41745	0.349	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3543	12	192219	133777644	41728	0.0162	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3548	12	192219	133777644	41775	-0.2411	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3555	12	192219	133777644	41771	0.0074	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3558	12	192219	133777644	41758	0.0342	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3560	12	192219	133777644	41765	0.0844	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3561	12	192219	133777644	41766	0.008	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3655	12	192219	133777644	41750	0	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3662	12	192219	133777644	41751	0.0004	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3663	12	192219	133777644	41642	0.0021	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3667	12	192219	133777644	41782	-0.0066	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3673	12	192219	133777644	41775	-0.1171	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3675	12	192219	133777644	41780	0.0042	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3678	12	192219	133777644	41777	0.0071	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3679	12	192219	133777644	41767	0	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3684	12	192219	133777644	41772	-0.0014	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3692	12	192219	133777644	41779	0	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3695	12	192219	133777644	41779	-0.0072	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3697	12	192219	133777644	41728	0.0048	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3710	12	192219	133777644	41738	0.3219	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3713	12	192219	133777644	41736	0.0048	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3814	12	192219	133777644	41779	0.3103	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3821	12	192219	133777644	41696	-0.0039	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3831	12	192219	133777644	41712	0.0087	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3833	12	192219	133777644	41782	0	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3837	12	192219	133777644	41783	0.0161	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3845	12	192219	133777644	41691	0.3732	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3848	12	192219	133777644	41785	0.0134	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3852	12	192219	133777644	41783	0.3578	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3854	12	192219	133777644	41780	-0.0434	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3855	12	192219	133777644	41688	0.0158	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3856	12	192219	133777644	41786	1.00E-04	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3866	12	192219	133777644	41739	-0.1987	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3869	12	192219	133777644	41723	-0.0356	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3875	12	192219	133777644	41782	0.0129	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3877	12	192219	133777644	41741	0.0028	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3947	12	192219	133777644	41682	0.0009	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3950	12	192219	133777644	41734	0.279	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3956	12	192219	133777644	41709	0	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3971	12	192219	133777644	41738	-0.0062	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3972	12	192219	133777644	41735	-0.3078	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3973	12	192219	133777644	41740	0.0073	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3975	12	192219	133777644	41696	0.0054	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3994	12	192219	133777644	41691	0.0034	NEUTRAL	NA	1001	Too-Many
TCGA.AA.A01P	12	192219	133777644	41689	0.0047	NEUTRAL	NA	1001	Too-Many
TCGA.AA.A01R	12	192219	133777644	41739	0.0133	NEUTRAL	NA	1001	Too-Many
TCGA.AA.A01S	12	192219	133777644	41743	0.00945	NEUTRAL	NA	1001	Too-Many
TCGA.AA.A01V	12	192219	133777644	41747	0.0112	NEUTRAL	NA	1001	Too-Many
TCGA.AA.A01X	12	192219	133777644	41691	0.0063	NEUTRAL	NA	1001	Too-Many
TCGA.AA.A01Z	12	192219	133777644	41732	0.0097	NEUTRAL	NA	1001	Too-Many
TCGA.AD.5900	12	192219	133777644	41701	0.3252	NEUTRAL	NA	1001	Too-Many
TCGA.AD.6548	12	192219	133777644	41620	0.0054	NEUTRAL	NA	1001	Too-Many
TCGA.AD.6888	12	192219	133777644	41720	-0.0036	NEUTRAL	NA	1001	Too-Many
TCGA.AD.6889	12	192219	133777644	41715	0.0007	NEUTRAL	NA	1001	Too-Many
TCGA.AD.6890	12	192219	133777644	41710	-0.0002	NEUTRAL	NA	1001	Too-Many
TCGA.AD.6895	12	192219	133777644	41702	0.0046	NEUTRAL	NA	1001	Too-Many
TCGA.AD.6899	12	192219	133777644	41643	-0.0653	NEUTRAL	NA	1001	Too-Many
TCGA.AD.6901	12	192219	133777644	41640	-0.2117	NEUTRAL	NA	1001	Too-Many
TCGA.AD.6964	12	192219	133777644	41711	0.0083	NEUTRAL	NA	1001	Too-Many
TCGA.AD.A5EJ	12	192219	133777644	41550	-0.0023	NEUTRAL	NA	1001	Too-Many
TCGA.AD.A5EK	12	192219	133777644	41526	-0.0298	NEUTRAL	NA	1001	Too-Many
TCGA.AF.2687	12	192219	133777644	41628	0.0483	NEUTRAL	NA	1001	Too-Many
TCGA.AF.2689	12	192219	133777644	41738	-0.0088	NEUTRAL	NA	1001	Too-Many
TCGA.AF.2690	12	192219	133777644	41764	0	NEUTRAL	NA	1001	Too-Many
TCGA.AF.2691	12	192219	133777644	41751	-0.1382	NEUTRAL	NA	1001	Too-Many
TCGA.AF.5654	12	192219	133777644	41660	0.3715	NEUTRAL	NA	1001	Too-Many
TCGA.AF.6136	12	192219	133777644	41702	-0.2228	NEUTRAL	NA	1001	Too-Many
TCGA.AF.A56L	12	192219	133777644	41660	0.003	NEUTRAL	NA	1001	Too-Many
TCGA.AF.A56N	12	192219	133777644	41655	0.0189	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3580	12	192219	133777644	41752	0.007	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3583	12	192219	133777644	40622	0.0079	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3592	12	192219	133777644	41776	0.0034	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3598	12	192219	133777644	41650	0.0127	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3599	12	192219	133777644	41736	0.0128	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3612	12	192219	133777644	41537	0	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3727	12	192219	133777644	41787	0.0178	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3728	12	192219	133777644	41785	-0.2677	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3878	12	192219	133777644	41781	0	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3882	12	192219	133777644	41774	0.0125	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3883	12	192219	133777644	41779	0.2588	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3890	12	192219	133777644	41621	0.0188	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3892	12	192219	133777644	41619	0.0021	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3893	12	192219	133777644	41417	0.0112	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3894	12	192219	133777644	41638	0.0025	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3896	12	192219	133777644	41650	0.2639	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3898	12	192219	133777644	41599	-0.1086	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3901	12	192219	133777644	41640	0.0041	NEUTRAL	NA	1001	Too-Many
TCGA.AG.3902	12	192219	133777644	41638	-0.0014	NEUTRAL	NA	1001	Too-Many
TCGA.AG.4022	12	192219	133777644	41764	0.012	NEUTRAL	NA	1001	Too-Many
TCGA.AH.6544	12	192219	133777644	41708	-0.2043	NEUTRAL	NA	1001	Too-Many
TCGA.AH.6547	12	192219	133777644	41710	-0.0027	NEUTRAL	NA	1001	Too-Many
TCGA.AH.6643	12	192219	133777644	41688	-0.0223	NEUTRAL	NA	1001	Too-Many
TCGA.AH.6897	12	192219	133777644	41667	0.004	NEUTRAL	NA	1001	Too-Many
TCGA.AH.6903	12	192219	133777644	41669	0.0047	NEUTRAL	NA	1001	Too-Many
TCGA.AM.5821	12	192219	133777644	41617	0.3558	NEUTRAL	NA	1001	Too-Many
TCGA.AY.4070	12	192219	133777644	41548	0.0254	NEUTRAL	NA	1001	Too-Many
TCGA.AY.4071	12	192219	133777644	41530	-0.0078	NEUTRAL	NA	1001	Too-Many
TCGA.AY.6196	12	192219	133777644	41279	-0.0313	NEUTRAL	NA	1001	Too-Many
TCGA.AY.6197	12	192219	133777644	40797	0.0069	NEUTRAL	NA	1001	Too-Many
TCGA.AY.6386	12	192219	133777644	41740	0.0012	NEUTRAL	NA	1001	Too-Many
TCGA.AY.A69D	12	192219	133777644	41710	0.0118	NEUTRAL	NA	1001	Too-Many
TCGA.AY.A8YK	12	192219	133777644	41761	0.1897	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.4308	12	192219	133777644	41746	0.0049	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.4315	12	192219	133777644	41719	0.0026	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.4615	12	192219	133777644	41740	0.0438	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.4616	12	192219	133777644	41642	0.0046	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.4682	12	192219	133777644	41753	0.0042	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.5403	12	192219	133777644	41707	-0.0091	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.5407	12	192219	133777644	41761	0.0244	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.6599	12	192219	133777644	41766	0.1131	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.6600	12	192219	133777644	41742	0.025	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.6601	12	192219	133777644	41762	0.0034	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.6603	12	192219	133777644	41678	0.011	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.6605	12	192219	133777644	41627	0.008	NEUTRAL	NA	1001	Too-Many
TCGA.AZ.6608	12	192219	133777644	41638	0.3666	NEUTRAL	NA	1001	Too-Many
TCGA.CA.5256	12	192219	133777644	41434	-0.3123	NEUTRAL	NA	1001	Too-Many
TCGA.CA.5796	12	192219	133777644	41684	-0.0099	NEUTRAL	NA	1001	Too-Many
TCGA.CA.6717	12	192219	133777644	41615	0.0041	NEUTRAL	NA	1001	Too-Many
TCGA.CA.6718	12	192219	133777644	41624	0.0022	NEUTRAL	NA	1001	Too-Many
TCGA.CA.6719	12	192219	133777644	41639	-0.0127	NEUTRAL	NA	1001	Too-Many
TCGA.CI.6619	12	192219	133777644	41698	0	NEUTRAL	NA	1001	Too-Many
TCGA.CI.6621	12	192219	133777644	41685	0	NEUTRAL	NA	1001	Too-Many
TCGA.CI.6622	12	192219	133777644	41677	0.0012	NEUTRAL	NA	1001	Too-Many
TCGA.CI.6623	12	192219	133777644	41703	-0.1287	NEUTRAL	NA	1001	Too-Many
TCGA.CK.4947	12	192219	133777644	41704	0	NEUTRAL	NA	1001	Too-Many
TCGA.CK.4950	12	192219	133777644	41374	0.2812	NEUTRAL	NA	1001	Too-Many
TCGA.CK.4951	12	192219	133777644	41555	0.006	NEUTRAL	NA	1001	Too-Many
TCGA.CK.5912	12	192219	133777644	41656	-0.2978	NEUTRAL	NA	1001	Too-Many
TCGA.CK.5915	12	192219	133777644	41678	0.125	NEUTRAL	NA	1001	Too-Many
TCGA.CK.5916	12	192219	133777644	41670	0.0048	NEUTRAL	NA	1001	Too-Many
TCGA.CK.6747	12	192219	133777644	41615	0	NEUTRAL	NA	1001	Too-Many
TCGA.CK.6751	12	192219	133777644	41519	-0.0008	NEUTRAL	NA	1001	Too-Many
TCGA.CL.4957	12	192219	133777644	41775	0.0639	NEUTRAL	NA	1001	Too-Many
TCGA.CL.5918	12	192219	133777644	41670	-0.0319	NEUTRAL	NA	1001	Too-Many
TCGA.CM.4743	12	192219	133777644	41756	-0.0025	NEUTRAL	NA	1001	Too-Many
TCGA.CM.4746	12	192219	133777644	41729	-0.0009	NEUTRAL	NA	1001	Too-Many
TCGA.CM.4747	12	192219	133777644	41735	0.2284	NEUTRAL	NA	1001	Too-Many
TCGA.CM.4748	12	192219	133777644	41747	-0.0031	NEUTRAL	NA	1001	Too-Many
TCGA.CM.4752	12	192219	133777644	41716	-0.0373	NEUTRAL	NA	1001	Too-Many
TCGA.CM.5341	12	192219	133777644	41735	-0.1919	NEUTRAL	NA	1001	Too-Many
TCGA.CM.5344	12	192219	133777644	41749	0.0365	NEUTRAL	NA	1001	Too-Many
TCGA.CM.5348	12	192219	133777644	41747	-0.0013	NEUTRAL	NA	1001	Too-Many
TCGA.CM.5860	12	192219	133777644	41681	0.2435	NEUTRAL	NA	1001	Too-Many
TCGA.CM.5861	12	192219	133777644	41715	-0.0009	NEUTRAL	NA	1001	Too-Many
TCGA.CM.5863	12	192219	133777644	41696	0.1325	NEUTRAL	NA	1001	Too-Many
TCGA.CM.5868	12	192219	133777644	41705	-0.0219	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6161	12	192219	133777644	41694	-0.0423	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6162	12	192219	133777644	41621	0	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6163	12	192219	133777644	41606	-0.2529	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6164	12	192219	133777644	41709	-0.1777	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6167	12	192219	133777644	41727	-0.001	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6168	12	192219	133777644	41728	0	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6169	12	192219	133777644	41498	0.1095	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6674	12	192219	133777644	41656	0.002	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6676	12	192219	133777644	41632	0.0721	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6678	12	192219	133777644	41675	0.2438	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6680	12	192219	133777644	41685	-0.0617	NEUTRAL	NA	1001	Too-Many
TCGA.D5.5537	12	192219	133777644	41651	-0.0232	NEUTRAL	NA	1001	Too-Many
TCGA.D5.5538	12	192219	133777644	41719	-0.0008	NEUTRAL	NA	1001	Too-Many
TCGA.D5.5540	12	192219	133777644	41743	0.0105	NEUTRAL	NA	1001	Too-Many
TCGA.D5.5541	12	192219	133777644	41742	0.0127	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6530	12	192219	133777644	41759	0.0002	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6531	12	192219	133777644	41743	0.3255	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6534	12	192219	133777644	41643	0.0043	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6536	12	192219	133777644	41759	0.0099	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6538	12	192219	133777644	41733	-0.0175	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6540	12	192219	133777644	41673	0.0004	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6920	12	192219	133777644	41654	0.0024	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6922	12	192219	133777644	41657	0	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6923	12	192219	133777644	41638	0	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6927	12	192219	133777644	41672	0.0016	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6928	12	192219	133777644	41668	0.1732	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6930	12	192219	133777644	41657	0.0022	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6931	12	192219	133777644	41647	0.2944	NEUTRAL	NA	1001	Too-Many
TCGA.D5.6932	12	192219	133777644	41658	-0.238	NEUTRAL	NA	1001	Too-Many
TCGA.D5.7000	12	192219	133777644	41570	0.3762	NEUTRAL	NA	1001	Too-Many
TCGA.DC.5869	12	192219	133777644	41659	-0.0566	NEUTRAL	NA	1001	Too-Many
TCGA.DC.6154	12	192219	133777644	41657	0	NEUTRAL	NA	1001	Too-Many
TCGA.DC.6681	12	192219	133777644	41684	0.0039	NEUTRAL	NA	1001	Too-Many
TCGA.DC.6682	12	192219	133777644	41708	0.0781	NEUTRAL	NA	1001	Too-Many
TCGA.DC.6683	12	192219	133777644	41670	0.1535	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A0XF	12	192219	133777644	41758	0.0004	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A1D0	12	192219	133777644	41529	0.009	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A1D4	12	192219	133777644	41763	0.0058	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A1D6	12	192219	133777644	41758	0.0432	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A1D8	12	192219	133777644	41684	-0.2445	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A1D9	12	192219	133777644	41729	6.00E-04	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A280	12	192219	133777644	41670	-0.0063	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A285	12	192219	133777644	41663	-0.0232	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A288	12	192219	133777644	41667	-0.0448	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A28A	12	192219	133777644	41690	0.0086	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A28C	12	192219	133777644	41701	-0.0002	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A28E	12	192219	133777644	41655	0.0078	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A28F	12	192219	133777644	41688	-0.0165	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A28G	12	192219	133777644	41706	0.0563	NEUTRAL	NA	1001	Too-Many
TCGA.DM.A28H	12	192219	133777644	41696	0.0057	NEUTRAL	NA	1001	Too-Many
TCGA.EF.5830	12	192219	133777644	41681	-0.0244	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6506	12	192219	133777644	41695	0	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6511	12	192219	133777644	41735	0.0064	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6512	12	192219	133777644	41761	0.2697	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6513	12	192219	133777644	41767	0.0051	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6514	12	192219	133777644	41703	-0.1221	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6881	12	192219	133777644	41669	-0.2198	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6882	12	192219	133777644	41668	0.0083	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6884	12	192219	133777644	41634	0.0027	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6885	12	192219	133777644	41650	0.2294	NEUTRAL	NA	1001	Too-Many
TCGA.EI.6917	12	192219	133777644	41628	-0.0015	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6460	12	192219	133777644	41752	-0.2392	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6569	12	192219	133777644	41760	0.0032	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6570	12	192219	133777644	41765	-0.001	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6703	12	192219	133777644	41698	0.0854	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6806	12	192219	133777644	41573	-0.0004	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6807	12	192219	133777644	41646	-0.1899	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6808	12	192219	133777644	41681	0.0211	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6854	12	192219	133777644	41654	0.0102	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6855	12	192219	133777644	41643	0.0024	NEUTRAL	NA	1001	Too-Many
TCGA.F4.6856	12	192219	133777644	41667	0.0027	NEUTRAL	NA	1001	Too-Many
TCGA.F5.6571	12	192219	133777644	41691	-0.0288	NEUTRAL	NA	1001	Too-Many
TCGA.F5.6810	12	192219	133777644	41696	-0.07	NEUTRAL	NA	1001	Too-Many
TCGA.F5.6813	12	192219	133777644	41706	0.0001	NEUTRAL	NA	1001	Too-Many
TCGA.F5.6814	12	192219	133777644	41668	0.0036	NEUTRAL	NA	1001	Too-Many
TCGA.F5.6861	12	192219	133777644	41645	0	NEUTRAL	NA	1001	Too-Many
TCGA.F5.6864	12	192219	133777644	41670	-0.0503	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6293	12	192219	133777644	41735	-0.0073	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6294	12	192219	133777644	41767	-0.0259	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6297	12	192219	133777644	41771	0.0518	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6298	12	192219	133777644	41762	0.0044	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6303	12	192219	133777644	41762	-0.0972	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6304	12	192219	133777644	41671	-0.0024	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6307	12	192219	133777644	41767	0.0453	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6309	12	192219	133777644	41686	0.0105	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6310	12	192219	133777644	41741	-0.018	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6311	12	192219	133777644	41769	-0.0126	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6317	12	192219	133777644	41733	-0.3034	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6320	12	192219	133777644	41771	0	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6321	12	192219	133777644	41764	0.0032	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6323	12	192219	133777644	41770	0.2098	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6588	12	192219	133777644	41762	0.0059	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6625	12	192219	133777644	41754	-0.0209	NEUTRAL	NA	1001	Too-Many
TCGA.G4.6628	12	192219	133777644	41675	0.0097	NEUTRAL	NA	1001	Too-Many
TCGA.G5.6235	12	192219	133777644	41773	0	NEUTRAL	NA	1001	Too-Many
TCGA.NH.A50T	12	192219	133777644	41521	0.0059	NEUTRAL	NA	1001	Too-Many
TCGA.NH.A50V	12	192219	133777644	41530	0.0026	NEUTRAL	NA	1001	Too-Many
TCGA.NH.A5IV	12	192219	133777644	41675	-0.0015	NEUTRAL	NA	1001	Too-Many
TCGA.NH.A6GA	12	192219	133777644	41708	-0.0007	NEUTRAL	NA	1001	Too-Many
TCGA.NH.A6GB	12	192219	133777644	41744	0.196	NEUTRAL	NA	1001	Too-Many
TCGA.NH.A6GC	12	192219	133777644	41722	-0.0088	NEUTRAL	NA	1001	Too-Many
TCGA.NH.A8F8	12	192219	133777644	41763	-0.0234	NEUTRAL	NA	1001	Too-Many
TCGA.QG.A5YV	12	192219	133777644	41492	0.0138	NEUTRAL	NA	1001	Too-Many
TCGA.QG.A5Z2	12	192219	133777644	41420	0.0013	NEUTRAL	NA	1001	Too-Many
TCGA.T9.A92H	12	192219	133777644	41750	0.0323	NEUTRAL	NA	1001	Too-Many
TCGA.WS.AB45	12	192219	133777644	41734	0.0014	NEUTRAL	NA	1001	Too-Many
TCGA.RU.A8FL	12	229346	300499	35	-0.3876	NEUTRAL	NA	2	"IQSEC3,SLC6A12"
TCGA.AA.A00D.01A	12	247392	266656	4	-0.1503	NEUTRAL	NA	1	IQSEC3
TCGA.AG.4009.01A	12	247392	280216	10	-0.1159	NEUTRAL	NA	1	IQSEC3
TCGA.AG.3891.01A	12	247392	307026	17	-0.3177	NEUTRAL	NA	2	"IQSEC3,SLC6A12"
TCGA.AG.A00C.01A	12	247392	331649	25	0.0487	NEUTRAL	NA	3	"IQSEC3,SLC6A12,SLC6A13"
TCGA.AA.A00L.01A	12	247392	416569	39	-0.0172	NEUTRAL	NA	4	"IQSEC3,KDM5A,SLC6A12,SLC6A13"
TCGA.AA.A00A.01A	12	247392	443355	40	0.0638	NEUTRAL	NA	4	"IQSEC3,KDM5A,SLC6A12,SLC6A13"
TCGA.AA.3967.01A	12	247392	1904405	170	-0.0065	NEUTRAL	NA	14	"ADIPOR2,B4GALNT3,CACNA2D4,CCDC77,ERC1,FBXL14,IQSEC3,KDM5A,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AG.A00Y.01A	12	247392	2224348	207	0.0373	NEUTRAL	NA	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AA.3930.01A	12	247392	2676707	232	-0.0152	NEUTRAL	NA	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AA.A00Q.01A	12	247392	2717670	164	0.2124	NEUTRAL	NA	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AG.3906.01A	12	247392	2800029	258	-0.1242	NEUTRAL	NA	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AA.A01F.01A	12	247392	2912269	172	-0.254	NEUTRAL	NA	18	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,FKBP4,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AA.A017.01A	12	247392	2921878	244	0	NEUTRAL	NA	19	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,FKBP4,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AA.A029.01A	12	247392	2968343	261	0.2333	NEUTRAL	NA	21	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.A6.3808.01A	12	247392	3390870	333	0.0207	NEUTRAL	NA	25	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AA.A02E.01A	12	247392	5153265	406	-0.2829	NEUTRAL	NA	41	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AA.3861.01A	12	247392	6055224	475	0.1445	NEUTRAL	NA	43	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AG.A01L.01A	12	247392	6094688	463	0.0807	NEUTRAL	NA	44	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,VWF,WNK1,WNT5B"
TCGA.AA.3862.01A	12	247392	6103549	495	-0.065	NEUTRAL	NA	44	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,VWF,WNK1,WNT5B"
TCGA.AG.A016.01A	12	247392	6422767	506	-0.1245	NEUTRAL	NA	46	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD9,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,VWF,WNK1,WNT5B"
TCGA.AG.A032.01A	12	247392	6672195	572	-0.1057	NEUTRAL	NA	57	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD9,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,IFFO1,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,LTBR,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B"
TCGA.AG.A02X.01A	12	247392	6709396	618	0.1233	NEUTRAL	NA	58	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD9,CHD4,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,IFFO1,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,LTBR,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B"
TCGA.AA.A01I.01A	12	247392	6972966	709	-0.0116	NEUTRAL	NA	73	"ACRBP,ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PIANP,PLEKHG6,PRMT8,PTMS,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AA.3815.01A	12	247392	7063979	799	0.0164	NEUTRAL	NA	80	"ACRBP,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AA.A024.01A	12	247392	7074776	776	0.0148	NEUTRAL	NA	81	"ACRBP,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AA.A01K.01A	12	247392	7361571	794	-0.1223	NEUTRAL	NA	89	"ACRBP,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AA.3509.01A	12	247392	7476840	901	-0.0419	NEUTRAL	NA	90	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AZ.4684.01A	12	247392	7476840	901	0.0039	NEUTRAL	NA	90	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.CK.4948.01B	12	247392	7655028	933	0.1361	NEUTRAL	NA	92	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.A6.3810.01A	12	247392	8377359	1007	-0.0922	NEUTRAL	NA	106	Too-Many
TCGA.DM.A28M.01A	12	247392	8618043	1010	0.1659	NEUTRAL	NA	107	Too-Many
TCGA.AA.A02H.01A	12	247392	9074145	992	-0.1733	NEUTRAL	NA	114	Too-Many
TCGA.AA.A01C.01A	12	247392	9094995	1034	-0.1578	NEUTRAL	NA	115	Too-Many
TCGA.AG.A023.01A	12	247392	9098787	1031	-0.215	NEUTRAL	NA	115	Too-Many
TCGA.AG.A01J.01A	12	247392	9225217	1039	-0.2481	NEUTRAL	NA	117	Too-Many
TCGA.AG.A025.01A	12	247392	9581668	1136	-0.2198	NEUTRAL	NA	118	Too-Many
TCGA.AG.A01N.01A	12	247392	9596081	1121	-0.3238	NEUTRAL	NA	118	Too-Many
TCGA.AG.A00H.01A	12	247392	10871664	1253	-0.1278	NEUTRAL	NA	145	Too-Many
TCGA.CM.4750.01A	12	247392	11420087	1362	-0.1134	NEUTRAL	NA	164	Too-Many
TCGA.AG.A02G.01A	12	247392	13215739	1395	0.2184	NEUTRAL	NA	182	Too-Many
TCGA.DM.A282.01A	12	247392	28544190	2259	8.00E-04	NEUTRAL	NA	258	Too-Many
TCGA.AA.A00J.01A	12	247392	31256481	1902	0.0428	NEUTRAL	NA	266	Too-Many
TCGA.AA.A02R.01A	12	247392	49224200	2916	0.3326	NEUTRAL	NA	333	Too-Many
TCGA.AG.A015.01A	12	247392	49521699	3081	0.2877	NEUTRAL	NA	346	Too-Many
TCGA.AA.A01D.01A	12	247392	53877646	3794	-0.0843	NEUTRAL	NA	446	Too-Many
TCGA.AA.A02F.01A	12	247392	58114517	4599	0.032	NEUTRAL	NA	570	Too-Many
TCGA.AG.A011.01A	12	247392	105303383	6853	0.0358	NEUTRAL	NA	765	Too-Many
TCGA.AA.A02W.01A	12	247392	113633332	7746	0.0753	NEUTRAL	NA	850	Too-Many
TCGA.AA.A00O.01A	12	247392	120597612	8057	-0.051	NEUTRAL	NA	884	Too-Many
TCGA.AA.A00Z.01A	12	247392	130892224	173	-0.2994	NEUTRAL	NA	974	Too-Many
TCGA.AG.3605.01A	12	247392	130892224	192	-0.1935	NEUTRAL	NA	974	Too-Many
TCGA.AA.3980.01A	12	247392	133778682	9966	-0.151	NEUTRAL	NA	1001	Too-Many
TCGA.AA.A004.01A	12	247392	133778682	8880	-0.1781	NEUTRAL	NA	1001	Too-Many
TCGA.AA.A02J.01A	12	247392	133778682	8891	-0.0993	NEUTRAL	NA	1001	Too-Many
TCGA.AH.6549.01A	12	247392	133778682	9998	0.2158	NEUTRAL	NA	1001	Too-Many
TCGA.AY.A54L.01A	12	247392	133778682	10022	-0.1016	NEUTRAL	NA	1001	Too-Many
TCGA.CM.6165.01A	12	247392	133778682	10038	-0.01	NEUTRAL	NA	1001	Too-Many
TCGA.AA.3976	12	250238	23449063	7886	0	NEUTRAL	NA	231	Too-Many
TCGA.A6.2678	12	261085	79345580	24058	0.0058	NEUTRAL	NA	657	Too-Many
TCGA.AF.3911	12	268353	37857750	12036	0.347	NEUTRAL	NA	279	Too-Many
TCGA.AA.A00D.01A	12	271042	313688	18	0.3689	NEUTRAL	NA	2	"IQSEC3,SLC6A12"
TCGA.AG.A008.01A	12	280216	49224200	3020	0.0911	NEUTRAL	NA	333	Too-Many
TCGA.RU.A8FL	12	301427	34341237	11979	-0.0602	NEUTRAL	NA	278	Too-Many
TCGA.AA.A00K.01A	12	302393	6697454	499	0.3606	NEUTRAL	NA	57	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD9,CHD4,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,IFFO1,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,LTBR,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B"
TCGA.AG.3891.01A	12	307925	645334	61	-0.0216	NEUTRAL	NA	5	"B4GALNT3,CCDC77,KDM5A,SLC6A12,SLC6A13"
TCGA.AA.A02K.01A	12	313700	1895094	151	0.0992	NEUTRAL	NA	12	"ADIPOR2,B4GALNT3,CCDC77,ERC1,FBXL14,KDM5A,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.3L.AA1B	12	318706	133777644	41683	0.1576	NEUTRAL	NA	1000	Too-Many
TCGA.AA.A00D.01A	12	318892	437961	20	-0.1313	NEUTRAL	NA	3	"KDM5A,SLC6A12,SLC6A13"
TCGA.AA.A00N.01A	12	330085	333141	5	0.263	NEUTRAL	NA	1	SLC6A13
TCGA.AA.A010.01A	12	330085	406180	19	-0.1804	NEUTRAL	NA	2	"KDM5A,SLC6A13"
TCGA.AF.3914.01A	12	330085	6861399	663	-0.0413	NEUTRAL	NA	63	"ACRBP,ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD9,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,IFFO1,ING4,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LPAR5,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,PARP11,PIANP,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AG.4009.01A	12	330505	1675844	132	-0.0419	NEUTRAL	NA	9	"B4GALNT3,CCDC77,ERC1,FBXL14,KDM5A,NINJ2,RAD52,SLC6A13,WNK1"
TCGA.AG.A00C.01A	12	332246	459759	31	-0.3172	NEUTRAL	NA	2	"KDM5A,SLC6A13"
TCGA.AA.A01Q.01A	12	335505	660038	32	0.1637	NEUTRAL	NA	4	"B4GALNT3,CCDC77,KDM5A,SLC6A13"
TCGA.AM.5820	12	351466	646299	90	-0.1193	NEUTRAL	NA	4	"B4GALNT3,CCDC77,KDM5A,SLC6A13"
TCGA.AA.A010.01A	12	416080	537884	28	0.3168	NEUTRAL	NA	2	"CCDC77,KDM5A"
TCGA.AA.3819	12	421393	673853	78	0.3489	NEUTRAL	NA	4	"B4GALNT3,CCDC77,KDM5A,NINJ2"
TCGA.CK.5914.01A	12	422174	939128	56	-0.1012	NEUTRAL	NA	5	"B4GALNT3,CCDC77,KDM5A,NINJ2,WNK1"
TCGA.AA.A00N.01A	12	443355	475063	8	0.1671	NEUTRAL	NA	1	KDM5A
TCGA.AG.3909.01A	12	443355	2721019	189	0.0591	NEUTRAL	NA	14	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,KDM5A,LRTM2,NINJ2,RAD52,WNK1,WNT5B"
TCGA.AG.A00C.01A	12	461329	922758	40	0.086	NEUTRAL	NA	5	"B4GALNT3,CCDC77,KDM5A,NINJ2,WNK1"
TCGA.AA.A00D.01A	12	569491	1192303	58	0.0095	NEUTRAL	NA	5	"B4GALNT3,ERC1,NINJ2,RAD52,WNK1"
TCGA.AA.A00A.01A	12	653456	1192303	55	0.0363	NEUTRAL	NA	5	"B4GALNT3,ERC1,NINJ2,RAD52,WNK1"
TCGA.AA.A00L.01A	12	653456	6640454	427	0.0411	NEUTRAL	NA	49	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCND2,CD27,CD9,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,ITFG2,KCNA1,KCNA5,KCNA6,LRTM2,LTBR,MRPL51,NCAPD2,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SCNN1A,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B"
TCGA.AM.5820	12	657070	728709	39	0.3534	NEUTRAL	NA	2	"B4GALNT3,NINJ2"
TCGA.AA.A01Q.01A	12	661177	675069	11	-0.4044	NEUTRAL	NA	2	"B4GALNT3,NINJ2"
TCGA.AG.3891.01A	12	661177	2757566	163	-0.0801	NEUTRAL	NA	12	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,LRTM2,NINJ2,RAD52,WNK1,WNT5B"
TCGA.AA.3819	12	674176	133777644	41611	0.0025	NEUTRAL	NA	995	Too-Many
TCGA.AM.5820	12	735503	1590692	205	-0.2575	NEUTRAL	NA	4	"ERC1,NINJ2,RAD52,WNK1"
TCGA.AA.A01Q.01A	12	772467	2800029	110	0.2784	NEUTRAL	NA	11	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,LRTM2,NINJ2,RAD52,WNK1,WNT5B"
TCGA.AG.A026	12	801259	10343092	3342	-0.0471	NEUTRAL	NA	127	Too-Many
TCGA.CM.4744.01A	12	862680	24365291	1907	0.3715	NEUTRAL	NA	225	Too-Many
TCGA.AG.A00C.01A	12	936166	999551	23	-0.3518	NEUTRAL	NA	1	WNK1
TCGA.CK.5914.01A	12	966295	1017603	27	0.3544	NEUTRAL	NA	1	WNK1
TCGA.AG.A00C.01A	12	1003666	2968343	165	-0.0472	NEUTRAL	NA	14	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,ITFG2,LRTM2,NRIP2,RAD52,WNK1,WNT5B"
TCGA.CK.5914.01A	12	1022491	2055322	80	-0.1753	NEUTRAL	NA	8	"ADIPOR2,CACNA2D4,DCP1B,ERC1,FBXL14,LRTM2,RAD52,WNT5B"
TCGA.A6.3807	12	1181324	1436977	51	0.199	NEUTRAL	NA	1	ERC1
TCGA.AA.A00D.01A	12	1480972	7050495	512	0.0455	NEUTRAL	NA	69	"ACRBP,ADIPOR2,AKAP3,ANO2,ATN1,C12orf4,CACNA1C,CACNA2D4,CCND2,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,CRACR2A,DCP1B,DYRK4,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,ITFG2,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NOP2,NRIP2,NTF3,P3H3,PARP11,PIANP,PLEKHG6,PRMT8,PTMS,RAD51AP1,RHNO1,SCNN1A,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNT5B,ZNF384"
TCGA.AM.5820	12	1590757	2887875	503	0.1775	NEUTRAL	NA	8	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,LRTM2,WNT5B"
TCGA.AA.A00N.01A	12	1599210	2912269	122	-0.3901	NEUTRAL	NA	9	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,FKBP4,LRTM2,WNT5B"
TCGA.AA.A00A.01A	12	1675844	6619182	324	0.004	NEUTRAL	NA	44	"ADIPOR2,AKAP3,ANO2,C12orf4,CACNA1C,CACNA2D4,CCND2,CD27,CD9,CRACR2A,DCP1B,DYRK4,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,ITFG2,KCNA1,KCNA5,KCNA6,LRTM2,LTBR,MRPL51,NCAPD2,NDUFA9,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RHNO1,SCNN1A,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNT5B"
TCGA.AG.4009.01A	12	1748851	2102378	48	-0.1568	NEUTRAL	NA	5	"ADIPOR2,CACNA2D4,DCP1B,LRTM2,WNT5B"
TCGA.AA.3844	12	1888672	1890588	5	-0.2601	NEUTRAL	NA	1	ADIPOR2
TCGA.AA.3530	12	1893169	5210760	1448	0.1762	NEUTRAL	NA	29	"ADIPOR2,AKAP3,C12orf4,CACNA1C,CACNA2D4,CCND2,CRACR2A,DCP1B,DYRK4,FGF23,FGF6,FKBP4,FOXM1,GALNT8,ITFG2,KCNA1,KCNA5,KCNA6,LRTM2,NDUFA9,NRIP2,PARP11,PRMT8,RAD51AP1,RHNO1,TEAD4,TIGAR,TSPAN9,TULP3"
TCGA.AA.A010.01A	12	1902770	2800029	99	0.2479	NEUTRAL	NA	4	"CACNA1C,CACNA2D4,DCP1B,LRTM2"
TCGA.AA.A02K.01A	12	1902781	1906538	4	-0.4952	NEUTRAL	NA	1	CACNA2D4
TCGA.AA.A02K.01A	12	1908781	2762963	77	0.1492	NEUTRAL	NA	4	"CACNA1C,CACNA2D4,DCP1B,LRTM2"
TCGA.CM.6166	12	1985155	114615783	34187	0.3764	NEUTRAL	NA	843	Too-Many
TCGA.AG.3731	12	2020044	2021699	3	-0.4001	NEUTRAL	NA	1	CACNA2D4
TCGA.AA.3967.01A	12	2027363	2774698	49	-0.0196	NEUTRAL	NA	3	"CACNA1C,CACNA2D4,DCP1B"
TCGA.CK.5914.01A	12	2102378	3600743	120	-0.3742	NEUTRAL	NA	11	"CACNA1C,DCP1B,FKBP4,FOXM1,ITFG2,NRIP2,PRMT8,RHNO1,TEAD4,TSPAN9,TULP3"
TCGA.AG.4009.01A	12	2107020	2775801	41	0.2844	NEUTRAL	NA	2	"CACNA1C,DCP1B"
TCGA.AG.3591	12	2260753	37913468	11436	-0.2064	NEUTRAL	NA	263	Too-Many
TCGA.D5.6532	12	2260753	77619330	22808	0.0001	NEUTRAL	NA	639	Too-Many
TCGA.AH.6644	12	2260753	133777644	41020	-0.0253	NEUTRAL	NA	985	Too-Many
TCGA.AA.3952	12	2502057	2502571	3	-0.0062	NEUTRAL	NA	1	CACNA1C
TCGA.AF.2693	12	2514230	3156721	211	0.0048	NEUTRAL	NA	8	"CACNA1C,FKBP4,FOXM1,ITFG2,NRIP2,RHNO1,TEAD4,TULP3"
TCGA.AG.A01W.01A	12	2613012	2779224	28	-0.1192	NEUTRAL	NA	1	CACNA1C
TCGA.AA.3930.01A	12	2690725	2775801	25	0.375	NEUTRAL	NA	1	CACNA1C
TCGA.AG.3891.01A	12	2760703	2797605	17	-0.4637	NEUTRAL	NA	1	CACNA1C
TCGA.AG.A00Y.01A	12	2774698	7295433	576	0.263	NEUTRAL	NA	72	"ACRBP,AKAP3,ANO2,ATN1,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CCND2,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DYRK4,EMG1,ENO2,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,ITFG2,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NOP2,NRIP2,NTF3,P3H3,PARP11,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RBP5,RHNO1,SCNN1A,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,ZNF384"
TCGA.AG.3909.01A	12	2775801	2931909	29	-0.1771	NEUTRAL	NA	3	"CACNA1C,FKBP4,ITFG2"
TCGA.AA.A02K.01A	12	2775814	2943767	38	0.1556	NEUTRAL	NA	4	"CACNA1C,FKBP4,ITFG2,NRIP2"
TCGA.AA.3930.01A	12	2778048	2795282	10	-0.1888	NEUTRAL	NA	1	CACNA1C
TCGA.AG.4009.01A	12	2778048	2800029	12	-0.2058	NEUTRAL	NA	1	CACNA1C
TCGA.AA.A00Q.01A	12	2783601	2912269	11	0.3309	NEUTRAL	NA	2	"CACNA1C,FKBP4"
TCGA.AA.3967.01A	12	2791679	2908207	9	-0.1742	NEUTRAL	NA	2	"CACNA1C,FKBP4"
TCGA.DY.A1DD	12	2797070	133777644	40886	0.0158	NEUTRAL	NA	985	Too-Many
TCGA.AG.A01W.01A	12	2845783	6541061	335	-0.3715	NEUTRAL	NA	32	"AKAP3,ANO2,C12orf4,CCND2,CD9,CRACR2A,DYRK4,FGF23,FGF6,FKBP4,FOXM1,GALNT8,ITFG2,KCNA1,KCNA5,KCNA6,LTBR,NDUFA9,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RHNO1,SCNN1A,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VWF"
TCGA.AM.5820	12	2891435	3083669	41	-0.1189	NEUTRAL	NA	7	"FKBP4,FOXM1,ITFG2,NRIP2,RHNO1,TEAD4,TULP3"
TCGA.AA.A01Q.01A	12	2910245	3103883	40	-0.0725	NEUTRAL	NA	7	"FKBP4,FOXM1,ITFG2,NRIP2,RHNO1,TEAD4,TULP3"
TCGA.AG.4009.01A	12	2912269	2943756	16	0.2014	NEUTRAL	NA	3	"FKBP4,ITFG2,NRIP2"
TCGA.AG.3891.01A	12	2912269	3149231	47	0.3294	NEUTRAL	NA	7	"FKBP4,FOXM1,ITFG2,NRIP2,RHNO1,TEAD4,TULP3"
TCGA.AA.A00Q.01A	12	2921878	2943756	15	-0.0855	NEUTRAL	NA	2	"ITFG2,NRIP2"
TCGA.AA.A00N.01A	12	2921878	4881594	164	0.2587	NEUTRAL	NA	20	"AKAP3,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,FOXM1,GALNT8,ITFG2,NDUFA9,NRIP2,PARP11,PRMT8,RAD51AP1,RHNO1,TEAD4,TIGAR,TSPAN9,TULP3"
TCGA.AA.A010.01A	12	2926336	2937451	12	-0.5118	NEUTRAL	NA	2	"ITFG2,NRIP2"
TCGA.AG.3906.01A	12	2926999	3048438	34	0.3508	NEUTRAL	NA	5	"FOXM1,ITFG2,NRIP2,RHNO1,TULP3"
TCGA.AA.A017.01A	12	2929222	6755953	362	-0.0955	NEUTRAL	NA	42	"ACRBP,AKAP3,ANO2,C12orf4,CCND2,CD27,CD9,CHD4,CRACR2A,DYRK4,FGF23,FGF6,FOXM1,GALNT8,GAPDH,IFFO1,ITFG2,KCNA1,KCNA5,KCNA6,LPAR5,LTBR,MRPL51,NCAPD2,NDUFA9,NOP2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RHNO1,SCNN1A,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF"
TCGA.AA.A01F.01A	12	2936720	7249005	480	-0.2833	NEUTRAL	NA	67	"ACRBP,AKAP3,ANO2,ATN1,C12orf4,C12orf57,C1R,C1RL,C1S,CCND2,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,CRACR2A,DYRK4,EMG1,ENO2,FGF23,FGF6,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NOP2,NRIP2,NTF3,P3H3,PARP11,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RHNO1,SCNN1A,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,ZNF384"
TCGA.F4.6809	12	2961265	133777644	40775	0.0075	NEUTRAL	NA	981	Too-Many
TCGA.AA.A00Q.01A	12	2967822	3103883	23	0.2941	NEUTRAL	NA	4	"FOXM1,RHNO1,TEAD4,TULP3"
TCGA.AG.3909.01A	12	2981231	2997065	4	-0.4753	NEUTRAL	NA	2	"FOXM1,RHNO1"
TCGA.AG.4009.01A	12	2997065	3805911	45	0.1932	NEUTRAL	NA	6	"CRACR2A,PRMT8,RHNO1,TEAD4,TSPAN9,TULP3"
TCGA.AG.A00C.01A	12	3018619	6062612	166	-0.1277	NEUTRAL	NA	22	"AKAP3,ANO2,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,PARP11,PRMT8,RAD51AP1,TEAD4,TIGAR,TSPAN9,TULP3,VWF"
TCGA.AA.A029.01A	12	3043574	9596081	808	0.1481	NEUTRAL	NA	96	"A2M,A2ML1,ACRBP,ACSM4,AICDA,AKAP3,ANO2,APOBEC1,ATN1,C12orf4,C12orf57,C1R,C1RL,C1S,C3AR1,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLSTN3,COPS7A,CRACR2A,DPPA3,DYRK4,EMG1,ENO2,FAM90A1,FGF23,FGF6,FOXJ2,GALNT8,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,KCNA1,KCNA5,KCNA6,KLRG1,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,M6PR,MFAP5,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NDUFA9,NECAP1,NOP2,NTF3,P3H3,PARP11,PEX5,PHB2,PHC1,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,PZP,RAD51AP1,RBP5,RIMKLB,SCNN1A,SLC2A14,SLC2A3,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,ZNF384,ZNF705A"
TCGA.AM.5820	12	3083708	5415849	1146	0.1554	NEUTRAL	NA	18	"AKAP3,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,PARP11,PRMT8,RAD51AP1,TEAD4,TIGAR,TSPAN9"
TCGA.AG.3906.01A	12	3103883	3923151	36	-0.0193	NEUTRAL	NA	5	"CRACR2A,PARP11,PRMT8,TEAD4,TSPAN9"
TCGA.AA.A00Q.01A	12	3120106	3392160	16	-0.3076	NEUTRAL	NA	2	"TEAD4,TSPAN9"
TCGA.AA.A010.01A	12	3130962	3390870	9	0.1037	NEUTRAL	NA	2	"TEAD4,TSPAN9"
TCGA.AA.3967.01A	12	3147097	6181449	184	-0.0837	NEUTRAL	NA	21	"AKAP3,ANO2,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,PARP11,PRMT8,RAD51AP1,TEAD4,TIGAR,TSPAN9,VWF"
TCGA.AA.A02K.01A	12	3147098	6121175	173	0.1224	NEUTRAL	NA	21	"AKAP3,ANO2,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,PARP11,PRMT8,RAD51AP1,TEAD4,TIGAR,TSPAN9,VWF"
TCGA.AA.3930.01A	12	3149231	7310529	549	0.2039	NEUTRAL	NA	65	"ACRBP,AKAP3,ANO2,ATN1,C12orf4,C12orf57,C1R,C1RL,C1S,CCND2,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DYRK4,EMG1,ENO2,FGF23,FGF6,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NOP2,NTF3,P3H3,PARP11,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RBP5,SCNN1A,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,USP5,VAMP1,VWF,ZNF384"
TCGA.AF.2693	12	3163546	5074337	878	0.3727	NEUTRAL	NA	16	"AKAP3,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA6,NDUFA9,PARP11,PRMT8,RAD51AP1,TIGAR,TSPAN9"
TCGA.CK.6748	12	3303398	19827309	5674	0.0039	NEUTRAL	NA	188	Too-Many
TCGA.AG.3891.01A	12	3310293	4614448	52	-0.0349	NEUTRAL	NA	9	"C12orf4,CCND2,CRACR2A,FGF23,FGF6,PARP11,PRMT8,TIGAR,TSPAN9"
TCGA.AA.A00Q.01A	12	3600743	7260810	446	0.0261	NEUTRAL	NA	61	"ACRBP,AKAP3,ANO2,ATN1,C12orf4,C12orf57,C1R,C1RL,C1S,CCND2,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,CRACR2A,DYRK4,EMG1,ENO2,FGF23,FGF6,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NOP2,NTF3,P3H3,PARP11,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,SCNN1A,SPSB2,TAPBPL,TIGAR,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AA.A01Q.01A	12	3736550	6062612	110	0.0981	NEUTRAL	NA	18	"AKAP3,ANO2,C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,PARP11,RAD51AP1,TIGAR,VWF"
TCGA.CK.5914.01A	12	3768679	4719269	60	-0.1233	NEUTRAL	NA	9	"C12orf4,CCND2,CRACR2A,DYRK4,FGF23,FGF6,PARP11,RAD51AP1,TIGAR"
TCGA.AG.4015	12	3932626	4757354	365	-0.4405	NEUTRAL	NA	9	"AKAP3,C12orf4,CCND2,DYRK4,FGF23,FGF6,PARP11,RAD51AP1,TIGAR"
TCGA.AG.3909.01A	12	3935280	4667971	42	-0.1102	NEUTRAL	NA	7	"C12orf4,CCND2,FGF23,FGF6,PARP11,RAD51AP1,TIGAR"
TCGA.AG.3881	12	4368351	4374372	4	-0.3669	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	12	4397956	4881594	72	-0.0993	NEUTRAL	NA	10	"AKAP3,C12orf4,CCND2,DYRK4,FGF23,FGF6,GALNT8,NDUFA9,RAD51AP1,TIGAR"
TCGA.AG.3906.01A	12	4430352	5744267	88	-0.1947	NEUTRAL	NA	14	"AKAP3,ANO2,C12orf4,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,RAD51AP1,TIGAR"
TCGA.AA.3524	12	4436832	5747293	727	-0.0428	NEUTRAL	NA	14	"AKAP3,ANO2,C12orf4,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,RAD51AP1,TIGAR"
TCGA.NH.A50U	12	4560027	5356928	436	-0.4627	NEUTRAL	NA	9	"AKAP3,C12orf4,DYRK4,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,RAD51AP1"
TCGA.DY.A0XA	12	4710599	8750284	1402	-0.0551	NEUTRAL	NA	75	"ACRBP,ACSM4,AKAP3,ANO2,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,C3AR1,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLSTN3,COPS7A,DPPA3,DYRK4,EMG1,ENO2,FAM90A1,FOXJ2,GALNT8,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NDUFA9,NECAP1,NOP2,NTF3,P3H3,PEX5,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SLC2A14,SLC2A3,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384,ZNF705A"
TCGA.CK.5914.01A	12	4721692	4919171	28	0.2339	NEUTRAL	NA	5	"AKAP3,DYRK4,GALNT8,KCNA6,NDUFA9"
TCGA.AA.3844	12	4768353	4779350	8	-0.2424	NEUTRAL	NA	1	NDUFA9
TCGA.A6.3807	12	4822914	133777644	39806	-0.373	NEUTRAL	NA	964	Too-Many
TCGA.AG.3909.01A	12	4829814	4881594	11	0.3368	NEUTRAL	NA	1	GALNT8
TCGA.DC.4745	12	4882666	26269046	7310	-0.0379	NEUTRAL	NA	202	Too-Many
TCGA.AG.3611.01A	12	4920291	6105126	33	0.2674	NEUTRAL	NA	6	"ANO2,KCNA1,KCNA5,KCNA6,NTF3,VWF"
TCGA.A6.3808.01A	12	4920291	7174910	399	0.1729	NEUTRAL	NA	46	"ACRBP,ANO2,ATN1,C12orf57,C1S,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,NTF3,P3H3,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AZ.4323	12	5034564	30344314	8753	0.0495	NEUTRAL	NA	222	Too-Many
TCGA.AF.2693	12	5074934	6935630	854	-0.0312	NEUTRAL	NA	29	"ACRBP,ANO2,CD27,CD4,CD9,CHD4,COPS7A,GAPDH,GPR162,IFFO1,ING4,KCNA5,LAG3,LPAR5,LTBR,MLF2,MRPL51,NCAPD2,NOP2,NTF3,PIANP,PLEKHG6,PTMS,SCNN1A,TAPBPL,TNFRSF1A,VAMP1,VWF,ZNF384"
TCGA.AG.3584	12	5186828	133777644	39824	0.0103	NEUTRAL	NA	960	Too-Many
TCGA.CM.5349	12	5196204	5196906	3	-0.4866	NEUTRAL	NA	0	None
TCGA.AA.3844	12	5213570	5243538	19	-0.3862	NEUTRAL	NA	0	None
TCGA.AA.3941	12	5235861	5244856	11	-0.4865	NEUTRAL	NA	0	None
TCGA.AA.3811	12	5244293	6073519	479	0.0338	NEUTRAL	NA	3	"ANO2,NTF3,VWF"
TCGA.AA.3530	12	5244293	6164454	532	0.1118	NEUTRAL	NA	3	"ANO2,NTF3,VWF"
TCGA.CM.5349	12	5244856	24433479	6267	0.3028	NEUTRAL	NA	191	Too-Many
TCGA.AA.3941	12	5248598	6065069	477	0.337	NEUTRAL	NA	3	"ANO2,NTF3,VWF"
TCGA.AA.3660	12	5444246	6044880	338	0.0002	NEUTRAL	NA	2	"ANO2,NTF3"
TCGA.CK.5914.01A	12	5541413	6031759	28	0.2929	NEUTRAL	NA	2	"ANO2,NTF3"
TCGA.D5.6541	12	5561199	133777644	39591	2.00E-04	NEUTRAL	NA	960	Too-Many
TCGA.NH.A50U	12	5582118	5894057	191	0.2875	NEUTRAL	NA	2	"ANO2,NTF3"
TCGA.AM.5820	12	5599645	7535955	619	0.1513	NEUTRAL	NA	50	"ACRBP,ACSM4,ANO2,ATN1,C12orf57,C1R,C1RL,C1S,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,NTF3,P3H3,PEX5,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AG.4009.01A	12	5603401	6031759	26	0.1848	NEUTRAL	NA	2	"ANO2,NTF3"
TCGA.AG.3891.01A	12	5603401	6153437	61	-0.1133	NEUTRAL	NA	3	"ANO2,NTF3,VWF"
TCGA.AA.A02E.01A	12	5672443	7084811	344	-0.4944	NEUTRAL	NA	40	"ACRBP,ANO2,ATN1,C12orf57,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.G5.6641	12	5730223	8848928	800	-0.0068	NEUTRAL	NA	69	"ACRBP,ACSM4,AICDA,ANO2,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,C3AR1,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLSTN3,COPS7A,DPPA3,EMG1,ENO2,FAM90A1,FOXJ2,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MFAP5,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NECAP1,NOP2,P3H3,PEX5,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SLC2A14,SLC2A3,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384,ZNF705A"
TCGA.AG.3906.01A	12	5756829	5939527	11	0.1606	NEUTRAL	NA	1	ANO2
TCGA.AZ.6606	12	5777044	9500498	958	-0.0111	NEUTRAL	NA	76	"A2M,A2ML1,ACRBP,ACSM4,AICDA,ANO2,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,C3AR1,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLSTN3,COPS7A,DPPA3,EMG1,ENO2,FAM90A1,FOXJ2,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,KLRG1,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,M6PR,MFAP5,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NECAP1,NOP2,P3H3,PEX5,PHB2,PHC1,PIANP,PLEKHG6,PTMS,PTPN6,PZP,RBP5,RIMKLB,SCNN1A,SLC2A14,SLC2A3,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384,ZNF705A"
TCGA.CM.5862	12	5818633	6537496	270	0.2909	NEUTRAL	NA	7	"ANO2,CD9,LTBR,PLEKHG6,SCNN1A,TNFRSF1A,VWF"
TCGA.NH.A50U	12	5894443	19294984	4158	-0.4571	NEUTRAL	NA	169	Too-Many
TCGA.AG.3906.01A	12	5941581	6161662	40	-0.2369	NEUTRAL	NA	2	"ANO2,VWF"
TCGA.AA.3660	12	6062877	9533882	843	0.0376	NEUTRAL	NA	75	"A2M,A2ML1,ACRBP,ACSM4,AICDA,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,C3AR1,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLSTN3,COPS7A,DPPA3,EMG1,ENO2,FAM90A1,FOXJ2,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,KLRG1,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,M6PR,MFAP5,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NECAP1,NOP2,P3H3,PEX5,PHB2,PHC1,PIANP,PLEKHG6,PTMS,PTPN6,PZP,RBP5,RIMKLB,SCNN1A,SLC2A14,SLC2A3,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384,ZNF705A"
TCGA.AG.A00C.01A	12	6076605	6120796	14	-0.4818	NEUTRAL	NA	1	VWF
TCGA.AG.4009.01A	12	6076605	6346883	50	0.019	NEUTRAL	NA	2	"CD9,VWF"
TCGA.AA.3811	12	6078124	7316028	310	0.3653	NEUTRAL	NA	45	"ACRBP,ATN1,C12orf57,C1R,C1RL,C1S,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.CK.5914.01A	12	6121188	6334540	32	-0.005	NEUTRAL	NA	2	"CD9,VWF"
TCGA.AA.A01Q.01A	12	6121188	6345303	36	-0.1074	NEUTRAL	NA	2	"CD9,VWF"
TCGA.AG.3909.01A	12	6121188	6427415	43	0.1405	NEUTRAL	NA	3	"CD9,PLEKHG6,VWF"
TCGA.AG.A00C.01A	12	6121188	6435547	44	-0.1338	NEUTRAL	NA	3	"CD9,PLEKHG6,VWF"
TCGA.AA.A02K.01A	12	6122601	6134700	8	-0.2412	NEUTRAL	NA	1	VWF
TCGA.AG.A01L.01A	12	6134699	7249005	327	0.0589	NEUTRAL	NA	43	"ACRBP,ATN1,C12orf57,C1R,C1RL,C1S,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AA.3862.01A	12	6135035	7899828	442	0.119	NEUTRAL	NA	53	"ACRBP,ACSM4,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4C,CLSTN3,COPS7A,DPPA3,EMG1,ENO2,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PEX5,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AA.A02K.01A	12	6135036	6554542	70	0.1591	NEUTRAL	NA	7	"CD27,CD9,LTBR,PLEKHG6,SCNN1A,TNFRSF1A,VWF"
TCGA.AA.3861.01A	12	6138479	7521924	398	0.3137	NEUTRAL	NA	48	"ACRBP,ACSM4,ATN1,C12orf57,C1R,C1RL,C1S,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PEX5,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AG.3891.01A	12	6155836	6964535	234	0.1952	NEUTRAL	NA	30	"ACRBP,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PIANP,PLEKHG6,PTMS,SCNN1A,TAPBPL,TNFRSF1A,USP5,VAMP1,VWF,ZNF384"
TCGA.AG.3906.01A	12	6166975	6464896	43	0.167	NEUTRAL	NA	5	"CD9,PLEKHG6,SCNN1A,TNFRSF1A,VWF"
TCGA.AA.3530	12	6168833	7316028	259	0.3781	NEUTRAL	NA	45	"ACRBP,ATN1,C12orf57,C1R,C1RL,C1S,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,RBP5,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AA.3967.01A	12	6182738	7174910	313	0.3152	NEUTRAL	NA	41	"ACRBP,ATN1,C12orf57,C1S,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PHB2,PIANP,PLEKHG6,PTMS,PTPN6,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AD.6965	12	6202607	129228885	37443	-0.0665	NEUTRAL	NA	925	Too-Many
TCGA.AA.A010.01A	12	6219493	6471206	40	-0.2193	NEUTRAL	NA	5	"CD9,PLEKHG6,SCNN1A,TNFRSF1A,VWF"
TCGA.G4.6322	12	6331580	15609076	2916	0.0138	NEUTRAL	NA	156	Too-Many
TCGA.AG.A016.01A	12	6424121	6499808	32	0.1923	NEUTRAL	NA	4	"LTBR,PLEKHG6,SCNN1A,TNFRSF1A"
TCGA.AG.A00C.01A	12	6436378	6499808	27	0.2215	NEUTRAL	NA	4	"LTBR,PLEKHG6,SCNN1A,TNFRSF1A"
TCGA.AG.4009.01A	12	6450873	6483507	10	-0.3599	NEUTRAL	NA	2	"SCNN1A,TNFRSF1A"
TCGA.AG.3906.01A	12	6471206	6499808	11	-0.3489	NEUTRAL	NA	2	"LTBR,SCNN1A"
TCGA.AA.A01Q.01A	12	6493481	6567790	19	0.298	NEUTRAL	NA	3	"CD27,LTBR,TAPBPL"
TCGA.AG.4009.01A	12	6493481	6579598	26	0.2888	NEUTRAL	NA	4	"CD27,LTBR,TAPBPL,VAMP1"
TCGA.CM.5862	12	6537543	6791347	59	-0.2207	NEUTRAL	NA	13	"ACRBP,CD27,CHD4,GAPDH,IFFO1,ING4,LPAR5,MRPL51,NCAPD2,NOP2,TAPBPL,VAMP1,ZNF384"
TCGA.AG.A00C.01A	12	6554245	6571907	13	-0.2941	NEUTRAL	NA	3	"CD27,TAPBPL,VAMP1"
TCGA.AG.A016.01A	12	6554245	6626534	29	-0.2559	NEUTRAL	NA	5	"CD27,MRPL51,NCAPD2,TAPBPL,VAMP1"
TCGA.AG.3906.01A	12	6554245	6861399	134	0.1243	NEUTRAL	NA	16	"ACRBP,CD27,CHD4,COPS7A,GAPDH,IFFO1,ING4,LPAR5,MLF2,MRPL51,NCAPD2,NOP2,PIANP,TAPBPL,VAMP1,ZNF384"
TCGA.AA.A02K.01A	12	6559300	6562645	7	-0.2073	NEUTRAL	NA	2	"CD27,TAPBPL"
TCGA.AA.A02K.01A	12	6566565	7354296	299	0.1127	NEUTRAL	NA	39	"ACRBP,ATN1,C12orf57,C1R,C1RL,C1S,CD4,CDCA3,CHD4,CLSTN3,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PEX5,PHB2,PIANP,PTMS,PTPN6,RBP5,SPSB2,TAPBPL,TPI1,USP5,VAMP1,ZNF384"
TCGA.AA.A01Q.01A	12	6569972	6638931	28	-0.242	NEUTRAL	NA	4	"MRPL51,NCAPD2,TAPBPL,VAMP1"
TCGA.AG.3909.01A	12	6569972	6650631	36	-0.49	NEUTRAL	NA	6	"GAPDH,IFFO1,MRPL51,NCAPD2,TAPBPL,VAMP1"
TCGA.AG.A00C.01A	12	6573558	7177122	247	0.2446	NEUTRAL	NA	33	"ACRBP,ATN1,C12orf57,C1S,CD4,CDCA3,CHD4,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,MLF2,MRPL51,NCAPD2,NOP2,P3H3,PHB2,PIANP,PTMS,PTPN6,SPSB2,TPI1,USP5,VAMP1,ZNF384"
TCGA.AG.4009.01A	12	6601390	6650631	29	-0.1886	NEUTRAL	NA	4	"GAPDH,IFFO1,MRPL51,NCAPD2"
TCGA.CK.5914.01A	12	6618823	6638633	18	-0.0384	NEUTRAL	NA	1	NCAPD2
TCGA.AA.A010.01A	12	6618823	6664372	33	-0.435	NEUTRAL	NA	3	"GAPDH,IFFO1,NCAPD2"
TCGA.AG.A016.01A	12	6630135	6669253	25	0.2182	NEUTRAL	NA	4	"GAPDH,IFFO1,NCAPD2,NOP2"
TCGA.AA.A00A.01A	12	6631955	7653698	271	0.0207	NEUTRAL	NA	39	"ACRBP,ACSM4,ATN1,C12orf57,C1R,C1RL,C1S,CD163,CD163L1,CD4,CDCA3,CHD4,CLSTN3,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,MLF2,NCAPD2,NOP2,P3H3,PEX5,PHB2,PIANP,PTMS,PTPN6,RBP5,SPSB2,TPI1,USP5,ZNF384"
TCGA.AA.A00L.01A	12	6643917	6670778	15	-0.4024	NEUTRAL	NA	3	"GAPDH,IFFO1,NOP2"
TCGA.AG.3909.01A	12	6670778	6704447	23	-0.0258	NEUTRAL	NA	2	"CHD4,NOP2"
TCGA.AA.A01Q.01A	12	6670778	6779864	52	-0.3191	NEUTRAL	NA	6	"ACRBP,CHD4,ING4,LPAR5,NOP2,ZNF384"
TCGA.AG.A016.01A	12	6670778	7125527	191	-0.1907	NEUTRAL	NA	27	"ACRBP,ATN1,C12orf57,CD4,CDCA3,CHD4,COPS7A,EMG1,ENO2,GNB3,GPR162,ING4,LAG3,LPAR5,LPCAT3,LRRC23,MLF2,NOP2,P3H3,PHB2,PIANP,PTMS,PTPN6,SPSB2,TPI1,USP5,ZNF384"
TCGA.AA.A00L.01A	12	6672195	6878708	72	0.1602	NEUTRAL	NA	10	"ACRBP,CHD4,COPS7A,ING4,LPAR5,MLF2,NOP2,PIANP,PTMS,ZNF384"
TCGA.AG.A032.01A	12	6676944	7973766	299	-0.0953	NEUTRAL	NA	43	"ACRBP,ACSM4,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,CD163,CD163L1,CD4,CDCA3,CHD4,CLEC4C,CLSTN3,COPS7A,DPPA3,EMG1,ENO2,GDF3,GNB3,GPR162,ING4,LAG3,LPAR5,LPCAT3,LRRC23,MLF2,NANOG,NANOGNB,NOP2,P3H3,PEX5,PHB2,PIANP,PTMS,PTPN6,RBP5,SLC2A14,SPSB2,TPI1,USP5,ZNF384"
TCGA.AA.A010.01A	12	6682192	6711495	26	-0.4962	NEUTRAL	NA	1	CHD4
TCGA.AG.4009.01A	12	6682192	6729244	28	-0.0627	NEUTRAL	NA	2	"CHD4,LPAR5"
TCGA.AA.3524	12	6683286	6935630	50	-0.0287	NEUTRAL	NA	12	"ACRBP,CD4,CHD4,COPS7A,GPR162,ING4,LAG3,LPAR5,MLF2,PIANP,PTMS,ZNF384"
TCGA.AG.A02X.01A	12	6709710	6972966	102	-0.1185	NEUTRAL	NA	16	"ACRBP,CD4,CDCA3,CHD4,COPS7A,GNB3,GPR162,ING4,LAG3,LPAR5,MLF2,P3H3,PIANP,PTMS,USP5,ZNF384"
TCGA.AA.A010.01A	12	6715389	6857914	41	0.0452	NEUTRAL	NA	8	"ACRBP,CHD4,COPS7A,ING4,LPAR5,MLF2,PIANP,ZNF384"
TCGA.AG.A01W.01A	12	6722200	6756672	14	-0.3332	NEUTRAL	NA	2	"ACRBP,LPAR5"
TCGA.AG.4009.01A	12	6730085	6788553	25	0.2621	NEUTRAL	NA	4	"ACRBP,ING4,LPAR5,ZNF384"
TCGA.AA.A017.01A	12	6760293	6973907	81	-0.4646	NEUTRAL	NA	13	"CD4,CDCA3,COPS7A,GNB3,GPR162,ING4,LAG3,MLF2,P3H3,PIANP,PTMS,USP5,ZNF384"
TCGA.AA.A01Q.01A	12	6781478	6857914	18	0.0832	NEUTRAL	NA	4	"COPS7A,MLF2,PIANP,ZNF384"
TCGA.AG.3909.01A	12	6804112	6886915	28	-0.4379	NEUTRAL	NA	5	"COPS7A,LAG3,MLF2,PIANP,PTMS"
TCGA.AG.A01W.01A	12	6805574	6826167	16	-0.2209	NEUTRAL	NA	1	PIANP
TCGA.AG.4009.01A	12	6833785	6859311	10	0.0813	NEUTRAL	NA	2	"COPS7A,MLF2"
TCGA.AG.A01W.01A	12	6844111	6921150	32	-0.3523	NEUTRAL	NA	4	"CD4,LAG3,MLF2,PTMS"
TCGA.AG.A036.01A	12	6844533	38551841	1907	-0.1871	NEUTRAL	NA	215	Too-Many
TCGA.AA.3939.01A	12	6857914	6884402	14	0.3222	NEUTRAL	NA	3	"LAG3,MLF2,PTMS"
TCGA.AG.4009.01A	12	6859819	6861399	4	-0.3473	NEUTRAL	NA	1	MLF2
TCGA.AA.A00L.01A	12	6879048	6887362	9	-0.3918	NEUTRAL	NA	2	"LAG3,PTMS"
TCGA.AG.3909.01A	12	6887362	6934602	11	0.2523	NEUTRAL	NA	3	"CD4,GPR162,LAG3"
TCGA.AA.A00N.01A	12	6887362	6948113	22	-0.3375	NEUTRAL	NA	4	"CD4,GPR162,LAG3,P3H3"
TCGA.AG.4009.01A	12	6887362	7024958	60	-0.3202	NEUTRAL	NA	11	"CD4,CDCA3,ENO2,GNB3,GPR162,LAG3,LRRC23,P3H3,SPSB2,TPI1,USP5"
TCGA.AA.A01Q.01A	12	6909233	6950683	17	0.0092	NEUTRAL	NA	4	"CD4,GNB3,GPR162,P3H3"
TCGA.AA.A00L.01A	12	6909233	7021917	49	0.1541	NEUTRAL	NA	9	"CD4,CDCA3,GNB3,GPR162,LRRC23,P3H3,SPSB2,TPI1,USP5"
TCGA.AG.A01W.01A	12	6931391	6939287	6	-0.1164	NEUTRAL	NA	2	"GPR162,P3H3"
TCGA.AG.3906.01A	12	6935831	7016431	44	0.2166	NEUTRAL	NA	8	"CDCA3,GNB3,GPR162,LRRC23,P3H3,SPSB2,TPI1,USP5"
TCGA.AG.A01W.01A	12	6940038	6962057	20	-0.4921	NEUTRAL	NA	4	"CDCA3,GNB3,P3H3,USP5"
TCGA.AF.3914.01A	12	6942715	7351575	143	-0.0459	NEUTRAL	NA	20	"ATN1,C12orf57,C1R,C1RL,C1S,CDCA3,CLSTN3,EMG1,ENO2,GNB3,LPCAT3,LRRC23,P3H3,PEX5,PHB2,PTPN6,RBP5,SPSB2,TPI1,USP5"
TCGA.AG.A01W.01A	12	6962803	7140083	20	-0.1176	NEUTRAL	NA	11	"ATN1,C12orf57,EMG1,ENO2,LPCAT3,LRRC23,PHB2,PTPN6,SPSB2,TPI1,USP5"
TCGA.AG.3891.01A	12	6965839	7355977	124	0.1246	NEUTRAL	NA	17	"ATN1,C12orf57,C1R,C1RL,C1S,CLSTN3,EMG1,ENO2,LPCAT3,LRRC23,PEX5,PHB2,PTPN6,RBP5,SPSB2,TPI1,USP5"
TCGA.AA.A017.01A	12	6974282	7172357	64	0.0065	NEUTRAL	NA	12	"ATN1,C12orf57,C1S,EMG1,ENO2,LPCAT3,LRRC23,PHB2,PTPN6,SPSB2,TPI1,USP5"
TCGA.AA.A01I.01A	12	6975095	96411250	5515	0.1879	NEUTRAL	NA	646	Too-Many
TCGA.AG.A02X.01A	12	6978039	7074776	39	-0.2858	NEUTRAL	NA	8	"ATN1,C12orf57,ENO2,LRRC23,PHB2,PTPN6,SPSB2,TPI1"
TCGA.AG.4015	12	6992121	10469024	904	-0.3868	NEUTRAL	NA	61	"A2M,A2ML1,ACSM4,AICDA,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,C3AR1,CD163,CD163L1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,CLSTN3,DPPA3,EMG1,ENO2,FAM90A1,FOXJ2,GABARAPL1,GDF3,KLRB1,KLRD1,KLRF1,KLRF2,KLRG1,LPCAT3,LRRC23,M6PR,MFAP5,NANOG,NANOGNB,NECAP1,OLR1,PEX5,PHB2,PHC1,PTPN6,PZP,RBP5,RIMKLB,SLC2A14,SLC2A3,TMEM52B,ZNF705A"
TCGA.AA.A00L.01A	12	7023008	7047613	15	-0.1943	NEUTRAL	NA	3	"ATN1,ENO2,LRRC23"
TCGA.G4.6626	12	7028393	13845204	2187	-0.0061	NEUTRAL	NA	109	Too-Many
TCGA.AA.A01Q.01A	12	7044728	7054887	10	-0.4469	NEUTRAL	NA	2	"ATN1,C12orf57"
TCGA.AA.A00L.01A	12	7047942	7303093	54	0.2424	NEUTRAL	NA	11	"ATN1,C12orf57,C1R,C1RL,C1S,CLSTN3,EMG1,LPCAT3,PHB2,PTPN6,RBP5"
TCGA.AG.4009.01A	12	7053249	7260810	53	0.2113	NEUTRAL	NA	8	"C12orf57,C1R,C1RL,C1S,EMG1,LPCAT3,PHB2,PTPN6"
TCGA.AA.A00N.01A	12	7053599	7072797	13	-0.0084	NEUTRAL	NA	2	"C12orf57,PTPN6"
TCGA.AA.A01Q.01A	12	7061138	7169085	13	0.0703	NEUTRAL	NA	5	"C1S,EMG1,LPCAT3,PHB2,PTPN6"
TCGA.AG.3906.01A	12	7061138	7260810	49	-0.0877	NEUTRAL	NA	7	"C1R,C1RL,C1S,EMG1,LPCAT3,PHB2,PTPN6"
TCGA.AA.3815.01A	12	7064813	7080040	18	-0.3256	NEUTRAL	NA	3	"EMG1,PHB2,PTPN6"
TCGA.AA.A010.01A	12	7065248	7177122	39	-0.1318	NEUTRAL	NA	5	"C1S,EMG1,LPCAT3,PHB2,PTPN6"
TCGA.AG.A02X.01A	12	7075532	48547099	2161	0.2583	NEUTRAL	NA	240	Too-Many
TCGA.AG.3881	12	7075881	7964028	180	0.3061	NEUTRAL	NA	18	"ACSM4,APOBEC1,C1R,C1RL,C1S,CD163,CD163L1,CLEC4C,CLSTN3,DPPA3,EMG1,GDF3,LPCAT3,NANOG,NANOGNB,PEX5,PHB2,RBP5"
TCGA.AA.A024.01A	12	7078611	26809179	1272	-0.0336	NEUTRAL	NA	163	Too-Many
TCGA.AA.A02E.01A	12	7086286	7310056	47	-0.0647	NEUTRAL	NA	6	"C1R,C1RL,C1S,CLSTN3,LPCAT3,RBP5"
TCGA.CK.5914.01A	12	7087456	7342952	51	0.1502	NEUTRAL	NA	7	"C1R,C1RL,C1S,CLSTN3,LPCAT3,PEX5,RBP5"
TCGA.AA.3815.01A	12	7090116	8329547	172	0.0788	NEUTRAL	NA	23	"ACSM4,APOBEC1,C1R,C1RL,C1S,C3AR1,CD163,CD163L1,CLEC4A,CLEC4C,CLSTN3,DPPA3,FOXJ2,GDF3,LPCAT3,NANOG,NANOGNB,NECAP1,PEX5,RBP5,SLC2A14,SLC2A3,ZNF705A"
TCGA.CM.5862	12	7120835	133777644	38960	-0.1671	NEUTRAL	NA	919	Too-Many
TCGA.AA.A00N.01A	12	7125527	7174910	10	-0.0265	NEUTRAL	NA	2	"C1S,LPCAT3"
TCGA.AA.A00D.01A	12	7125527	7310529	41	-0.2069	NEUTRAL	NA	6	"C1R,C1RL,C1S,CLSTN3,LPCAT3,RBP5"
TCGA.AF.6655	12	7165113	15604804	2728	-0.5065	NEUTRAL	NA	117	Too-Many
TCGA.AG.A016.01A	12	7169085	7244883	17	0.2285	NEUTRAL	NA	2	"C1R,C1S"
TCGA.AA.A00K.01A	12	7169085	7653698	89	0.2156	NEUTRAL	NA	9	"ACSM4,C1R,C1RL,C1S,CD163,CD163L1,CLSTN3,PEX5,RBP5"
TCGA.AA.A01Q.01A	12	7169741	7174910	8	-0.3932	NEUTRAL	NA	1	C1S
TCGA.AA.A01Q.01A	12	7175701	7261644	12	0.3311	NEUTRAL	NA	3	"C1R,C1RL,C1S"
TCGA.AA.3967.01A	12	7175701	43769829	1837	-0.0513	NEUTRAL	NA	212	Too-Many
TCGA.AG.A01W.01A	12	7234200	7252822	13	0.131	NEUTRAL	NA	2	"C1R,C1RL"
TCGA.AG.A016.01A	12	7249005	33592258	1610	-0.1753	NEUTRAL	NA	193	Too-Many
TCGA.AG.A01L.01A	12	7252230	7310056	22	-0.2278	NEUTRAL	NA	3	"C1RL,CLSTN3,RBP5"
TCGA.AA.A017.01A	12	7252230	7362597	37	-0.34	NEUTRAL	NA	4	"C1RL,CLSTN3,PEX5,RBP5"
TCGA.AA.A00Q.01A	12	7261644	7343402	24	-0.3784	NEUTRAL	NA	4	"C1RL,CLSTN3,PEX5,RBP5"
TCGA.AG.3906.01A	12	7276647	7295433	15	0.2571	NEUTRAL	NA	2	"CLSTN3,RBP5"
TCGA.AA.A01Q.01A	12	7276647	7303093	18	-0.4448	NEUTRAL	NA	2	"CLSTN3,RBP5"
TCGA.AG.A00C.01A	12	7277173	7295433	14	-0.1472	NEUTRAL	NA	2	"CLSTN3,RBP5"
TCGA.AG.3909.01A	12	7294662	7361571	21	-0.1909	NEUTRAL	NA	2	"CLSTN3,PEX5"
TCGA.AG.4009.01A	12	7301578	7310056	5	0.2725	NEUTRAL	NA	1	CLSTN3
TCGA.AG.3906.01A	12	7301578	7653698	62	-0.2046	NEUTRAL	NA	5	"ACSM4,CD163,CD163L1,CLSTN3,PEX5"
TCGA.AG.A00Y.01A	12	7301578	7656167	64	-0.3159	NEUTRAL	NA	5	"ACSM4,CD163,CD163L1,CLSTN3,PEX5"
TCGA.A6.3808.01A	12	7301578	7848027	70	0.2724	NEUTRAL	NA	7	"ACSM4,APOBEC1,CD163,CD163L1,CLSTN3,GDF3,PEX5"
TCGA.AA.A01F.01A	12	7301578	8073982	83	-0.3116	NEUTRAL	NA	13	"ACSM4,APOBEC1,CD163,CD163L1,CLEC4C,CLSTN3,DPPA3,GDF3,NANOG,NANOGNB,PEX5,SLC2A14,SLC2A3"
TCGA.AA.A00L.01A	12	7303494	7362597	18	-0.3906	NEUTRAL	NA	2	"CLSTN3,PEX5"
TCGA.AA.A01Q.01A	12	7303494	11338547	375	0.1258	NEUTRAL	NA	75	"A2M,A2ML1,ACSM4,AICDA,APOBEC1,C3AR1,CD163,CD163L1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,CLSTN3,DPPA3,FAM90A1,FOXJ2,GABARAPL1,GDF3,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,NANOG,NANOGNB,NECAP1,OLR1,PEX5,PHC1,PRH1,PRH2,PRR4,PZP,RIMKLB,SLC2A14,SLC2A3,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3,ZNF705A"
TCGA.AG.A01L.01A	12	7310529	8693275	145	0.0744	NEUTRAL	NA	22	"ACSM4,APOBEC1,C3AR1,CD163,CD163L1,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLSTN3,DPPA3,FAM90A1,FOXJ2,GDF3,NANOG,NANOGNB,NECAP1,PEX5,SLC2A14,SLC2A3,ZNF705A"
TCGA.AA.3811	12	7317701	7798402	99	-0.0521	NEUTRAL	NA	4	"ACSM4,CD163,CD163L1,PEX5"
TCGA.AA.3530	12	7317701	10914096	997	0.0844	NEUTRAL	NA	57	"A2M,A2ML1,ACSM4,AICDA,APOBEC1,C3AR1,CD163,CD163L1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,DPPA3,FAM90A1,FOXJ2,GABARAPL1,GDF3,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,NANOG,NANOGNB,NECAP1,OLR1,PEX5,PHC1,PZP,RIMKLB,SLC2A14,SLC2A3,STYK1,TMEM52B,YBX3,ZNF705A"
TCGA.AG.A00C.01A	12	7342952	7362597	15	0.3074	NEUTRAL	NA	1	PEX5
TCGA.AG.3611.01A	12	7342952	7459087	16	0.1598	NEUTRAL	NA	2	"ACSM4,PEX5"
TCGA.AA.A00D.01A	12	7342952	7476840	19	0.2764	NEUTRAL	NA	2	"ACSM4,PEX5"
TCGA.AA.3930.01A	12	7342952	7649384	54	-0.2244	NEUTRAL	NA	4	"ACSM4,CD163,CD163L1,PEX5"
TCGA.AA.A00Q.01A	12	7343775	9356316	218	0.2263	NEUTRAL	NA	30	"A2M,A2ML1,ACSM4,AICDA,APOBEC1,C3AR1,CD163,CD163L1,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,DPPA3,FAM90A1,FOXJ2,GDF3,KLRG1,M6PR,MFAP5,NANOG,NANOGNB,NECAP1,PEX5,PHC1,PZP,RIMKLB,SLC2A14,SLC2A3,ZNF705A"
TCGA.AF.3914.01A	12	7355977	26220480	1160	-0.0158	NEUTRAL	NA	152	Too-Many
TCGA.AA.A02K.01A	12	7355999	8248567	110	0.1665	NEUTRAL	NA	15	"ACSM4,APOBEC1,C3AR1,CD163,CD163L1,CLEC4C,DPPA3,FOXJ2,GDF3,NANOG,NANOGNB,NECAP1,PEX5,SLC2A14,SLC2A3"
TCGA.AG.3891.01A	12	7360218	7656167	49	-0.2523	NEUTRAL	NA	4	"ACSM4,CD163,CD163L1,PEX5"
TCGA.AG.A01W.01A	12	7360964	7531589	34	0.0847	NEUTRAL	NA	3	"ACSM4,CD163L1,PEX5"
TCGA.AA.A02E.01A	12	7361036	7656167	47	0.3258	NEUTRAL	NA	4	"ACSM4,CD163,CD163L1,PEX5"
TCGA.AA.A01K.01A	12	7362292	48536536	2046	0.2176	NEUTRAL	NA	231	Too-Many
TCGA.AA.A00F.01A	12	7362597	7559117	17	0.1682	NEUTRAL	NA	3	"ACSM4,CD163L1,PEX5"
TCGA.AF.2693	12	7368181	7694016	65	-0.0321	NEUTRAL	NA	4	"ACSM4,CD163,CD163L1,PEX5"
TCGA.AA.A01T	12	7375271	133777644	38964	-0.24	NEUTRAL	NA	912	Too-Many
TCGA.AA.3941	12	7384604	7774027	79	0.0347	NEUTRAL	NA	3	"ACSM4,CD163,CD163L1"
TCGA.AA.3844	12	7412350	7798564	77	0.2419	NEUTRAL	NA	3	"ACSM4,CD163,CD163L1"
TCGA.AA.A00L.01A	12	7456901	7509944	7	0.1378	NEUTRAL	NA	2	"ACSM4,CD163L1"
TCGA.AA.A010.01A	12	7456901	7521446	15	0.0037	NEUTRAL	NA	2	"ACSM4,CD163L1"
TCGA.AG.4009.01A	12	7456901	7559117	25	-0.0237	NEUTRAL	NA	2	"ACSM4,CD163L1"
TCGA.AG.A00C.01A	12	7456901	7559117	25	-0.4701	NEUTRAL	NA	2	"ACSM4,CD163L1"
TCGA.AA.3939.01A	12	7473259	7640431	32	0.1124	NEUTRAL	NA	3	"ACSM4,CD163,CD163L1"
TCGA.AA.3850	12	7480127	7785032	62	-0.38225	NEUTRAL	NA	3	"ACSM4,CD163,CD163L1"
TCGA.AA.A00D.01A	12	7509944	7656167	32	-0.2911	NEUTRAL	NA	2	"CD163,CD163L1"
TCGA.AA.A00L.01A	12	7519778	7653698	29	-0.398	NEUTRAL	NA	2	"CD163,CD163L1"
TCGA.AG.A01W.01A	12	7538894	7600895	7	-0.2863	NEUTRAL	NA	1	CD163L1
TCGA.AG.A00C.01A	12	7584992	7596608	4	0.111	NEUTRAL	NA	1	CD163L1
TCGA.AG.A00C.01A	12	7632413	7656167	14	-0.3517	NEUTRAL	NA	1	CD163
TCGA.AA.A00F.01A	12	7632413	8197304	54	0.1901	NEUTRAL	NA	10	"APOBEC1,CD163,CLEC4C,DPPA3,FOXJ2,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AG.4009.01A	12	7632413	10854510	396	-0.1205	NEUTRAL	NA	54	"A2M,A2ML1,AICDA,APOBEC1,C3AR1,CD163,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,DPPA3,FAM90A1,FOXJ2,GABARAPL1,GDF3,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,NANOG,NANOGNB,NECAP1,OLR1,PHC1,PZP,RIMKLB,SLC2A14,SLC2A3,STYK1,TMEM52B,YBX3,ZNF705A"
TCGA.AA.3509.01A	12	7635212	8377359	82	-0.2285	NEUTRAL	NA	15	"APOBEC1,C3AR1,CD163,CLEC4A,CLEC4C,DPPA3,FAM90A1,FOXJ2,GDF3,NANOG,NANOGNB,NECAP1,SLC2A14,SLC2A3,ZNF705A"
TCGA.AA.3930.01A	12	7651435	8211281	55	0.2814	NEUTRAL	NA	11	"APOBEC1,C3AR1,CD163,CLEC4C,DPPA3,FOXJ2,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AA.A00A.01A	12	7655028	8192397	38	0.2795	NEUTRAL	NA	10	"APOBEC1,CD163,CLEC4C,DPPA3,FOXJ2,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AG.3906.01A	12	7655028	8195215	43	0.376	NEUTRAL	NA	10	"APOBEC1,CD163,CLEC4C,DPPA3,FOXJ2,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AA.A00L.01A	12	7655028	9009712	102	0.2392	NEUTRAL	NA	22	"A2ML1,AICDA,APOBEC1,C3AR1,CD163,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,DPPA3,FAM90A1,FOXJ2,GDF3,MFAP5,NANOG,NANOGNB,NECAP1,RIMKLB,SLC2A14,SLC2A3,ZNF705A"
TCGA.CK.4948.01B	12	7656167	7883354	14	-0.204	NEUTRAL	NA	5	"APOBEC1,CD163,CLEC4C,DPPA3,GDF3"
TCGA.AF.2693	12	7719030	7761239	17	-0.425	NEUTRAL	NA	0	None
TCGA.AF.2693	12	7771447	7922445	41	-0.0238	NEUTRAL	NA	5	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOGNB"
TCGA.AA.3850	12	7788159	7815750	13	0.28395	NEUTRAL	NA	1	APOBEC1
TCGA.AA.3811	12	7798425	8245644	101	0.3617	NEUTRAL	NA	11	"APOBEC1,C3AR1,CLEC4C,DPPA3,FOXJ2,GDF3,NANOG,NANOGNB,NECAP1,SLC2A14,SLC2A3"
TCGA.AG.A00C.01A	12	7802106	7945508	19	0.2963	NEUTRAL	NA	6	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB"
TCGA.AZ.4684.01A	12	7802106	7984152	30	-0.5072	NEUTRAL	NA	7	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB,SLC2A14"
TCGA.AA.A00D.01A	12	7802106	8086375	35	0.3498	NEUTRAL	NA	8	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AG.3909.01A	12	7802106	8808363	100	0.0346	NEUTRAL	NA	19	"AICDA,APOBEC1,C3AR1,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,DPPA3,FAM90A1,FOXJ2,GDF3,MFAP5,NANOG,NANOGNB,NECAP1,SLC2A14,SLC2A3,ZNF705A"
TCGA.AG.A00Y.01A	12	7802106	9075189	147	0.2433	NEUTRAL	NA	22	"A2ML1,AICDA,APOBEC1,C3AR1,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,DPPA3,FAM90A1,FOXJ2,GDF3,MFAP5,NANOG,NANOGNB,NECAP1,PHC1,RIMKLB,SLC2A14,SLC2A3,ZNF705A"
TCGA.F4.6461	12	7803645	10480732	746	-0.4882	NEUTRAL	NA	44	"A2M,A2ML1,AICDA,APOBEC1,C3AR1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,DPPA3,FAM90A1,FOXJ2,GABARAPL1,GDF3,KLRB1,KLRD1,KLRF1,KLRF2,KLRG1,M6PR,MFAP5,NANOG,NANOGNB,NECAP1,OLR1,PHC1,PZP,RIMKLB,SLC2A14,SLC2A3,TMEM52B,ZNF705A"
TCGA.AA.A010.01A	12	7883354	7922980	7	-0.5073	NEUTRAL	NA	2	"CLEC4C,NANOGNB"
TCGA.CK.4948.01B	12	7889978	18892021	778	0.2035	NEUTRAL	NA	115	Too-Many
TCGA.AA.A017.01A	12	7898907	8925869	90	-0.4025	NEUTRAL	NA	17	"AICDA,C3AR1,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,FAM90A1,FOXJ2,MFAP5,NANOG,NANOGNB,NECAP1,RIMKLB,SLC2A14,SLC2A3,ZNF705A"
TCGA.AG.A00C.01A	12	7947017	7985273	10	-0.1826	NEUTRAL	NA	2	"NANOG,SLC2A14"
TCGA.AG.3881	12	7970720	8477954	99	-0.3178	NEUTRAL	NA	8	"C3AR1,CLEC4A,FAM90A1,FOXJ2,NECAP1,SLC2A14,SLC2A3,ZNF705A"
TCGA.AZ.4684.01A	12	7985273	8612163	44	0.0795	NEUTRAL	NA	9	"C3AR1,CLEC4A,CLEC6A,FAM90A1,FOXJ2,NECAP1,SLC2A14,SLC2A3,ZNF705A"
TCGA.AM.5820	12	8008131	52202023	12868	-0.0446	NEUTRAL	NA	293	Too-Many
TCGA.F4.6805	12	8070814	11421720	941	0.0021	NEUTRAL	NA	65	"A2M,A2ML1,AICDA,C3AR1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,FAM90A1,FOXJ2,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,NECAP1,OLR1,PHC1,PRB3,PRH1,PRH2,PRR4,PZP,RIMKLB,SLC2A3,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3,ZNF705A"
TCGA.AG.A00C.01A	12	8073982	8197304	14	0.2031	NEUTRAL	NA	2	"FOXJ2,SLC2A3"
TCGA.AG.A032.01A	12	8073982	9353852	202	-0.1648	NEUTRAL	NA	19	"A2M,A2ML1,AICDA,C3AR1,CLEC4A,CLEC4D,CLEC4E,CLEC6A,FAM90A1,FOXJ2,KLRG1,M6PR,MFAP5,NECAP1,PHC1,PZP,RIMKLB,SLC2A3,ZNF705A"
TCGA.CK.5914.01A	12	8075366	8866414	72	-0.4743	NEUTRAL	NA	13	"AICDA,C3AR1,CLEC4A,CLEC4D,CLEC4E,CLEC6A,FAM90A1,FOXJ2,MFAP5,NECAP1,RIMKLB,SLC2A3,ZNF705A"
TCGA.AA.3861.01A	12	8085535	10541288	309	0.2713	NEUTRAL	NA	39	"A2M,A2ML1,AICDA,C3AR1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,FAM90A1,FOXJ2,GABARAPL1,KLRB1,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MFAP5,NECAP1,OLR1,PHC1,PZP,RIMKLB,SLC2A3,TMEM52B,ZNF705A"
TCGA.AG.3891.01A	12	8085535	11338547	381	-0.1149	NEUTRAL	NA	63	"A2M,A2ML1,AICDA,C3AR1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,FAM90A1,FOXJ2,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,NECAP1,OLR1,PHC1,PRH1,PRH2,PRR4,PZP,RIMKLB,SLC2A3,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3,ZNF705A"
TCGA.AA.3862.01A	12	8085535	15035036	602	0.0768	NEUTRAL	NA	96	"A2M,A2ML1,AICDA,APOLD1,ART4,ATF7IP,BCL2L14,C12orf60,C3AR1,CD69,CDKN1B,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,CREBL2,DDX47,DUSP16,EMP1,ETV6,FAM90A1,FOXJ2,GABARAPL1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,LOH12CR1,LRP6,M6PR,MAGOHB,MANSC1,MFAP5,MGP,NECAP1,OLR1,PHC1,PLBD1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PZP,RIMKLB,SLC2A3,SMCO3,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,WBP11,YBX3,ZNF705A"
TCGA.AA.A00D.01A	12	8088527	16035591	564	-0.0869	NEUTRAL	NA	103	Too-Many
TCGA.DC.6158	12	8116895	133777644	38708	-0.1992	NEUTRAL	NA	901	Too-Many
TCGA.AA.3850	12	8166717	8295147	39	0.26835	NEUTRAL	NA	4	"C3AR1,CLEC4A,FOXJ2,NECAP1"
TCGA.A6.2686	12	8167540	131075165	38089	0.2338	NEUTRAL	NA	874	Too-Many
TCGA.AG.A01W.01A	12	8167685	8656527	36	-0.3067	NEUTRAL	NA	7	"C3AR1,CLEC4A,CLEC6A,FAM90A1,FOXJ2,NECAP1,ZNF705A"
TCGA.AA.A01F.01A	12	8192397	57572095	3212	-0.322	NEUTRAL	NA	450	Too-Many
TCGA.AA.A00A.01A	12	8195215	19285268	587	-7.00E-04	NEUTRAL	NA	111	Too-Many
TCGA.AG.3906.01A	12	8196241	8757843	49	-0.095	NEUTRAL	NA	10	"AICDA,C3AR1,CLEC4A,CLEC4D,CLEC4E,CLEC6A,FAM90A1,FOXJ2,NECAP1,ZNF705A"
TCGA.AA.A00K.01A	12	8197304	31435599	1130	0.2797	NEUTRAL	NA	167	Too-Many
TCGA.AA.A00N.01A	12	8200486	9161975	123	0.2379	NEUTRAL	NA	16	"A2ML1,AICDA,C3AR1,CLEC4A,CLEC4D,CLEC4E,CLEC6A,FAM90A1,FOXJ2,KLRG1,M6PR,MFAP5,NECAP1,PHC1,RIMKLB,ZNF705A"
TCGA.AG.A00C.01A	12	8200486	9161975	123	-0.2141	NEUTRAL	NA	16	"A2ML1,AICDA,C3AR1,CLEC4A,CLEC4D,CLEC4E,CLEC6A,FAM90A1,FOXJ2,KLRG1,M6PR,MFAP5,NECAP1,PHC1,RIMKLB,ZNF705A"
TCGA.AA.A00F.01A	12	8200486	16035591	550	-0.1079	NEUTRAL	NA	102	Too-Many
TCGA.AA.3930.01A	12	8211756	8693275	37	-0.0654	NEUTRAL	NA	8	"C3AR1,CLEC4A,CLEC4D,CLEC4E,CLEC6A,FAM90A1,NECAP1,ZNF705A"
TCGA.D5.6539	12	8212571	17531519	3051	0.0212	NEUTRAL	NA	105	Too-Many
TCGA.AA.3811	12	8246401	10909411	792	-0.0508	NEUTRAL	NA	43	"A2M,A2ML1,AICDA,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,FAM90A1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,NECAP1,OLR1,PHC1,PZP,RIMKLB,STYK1,TMEM52B,YBX3,ZNF705A"
TCGA.AA.A02K.01A	12	8276418	8377360	13	-0.0947	NEUTRAL	NA	3	"CLEC4A,FAM90A1,ZNF705A"
TCGA.AA.3941	12	8309380	8343960	5	-0.514	NEUTRAL	NA	1	ZNF705A
TCGA.AA.3850	12	8343960	8619561	39	0.18095	NEUTRAL	NA	2	"CLEC6A,FAM90A1"
TCGA.AA.3524	12	8366600	11504090	894	0.0132	NEUTRAL	NA	60	"A2M,A2ML1,AICDA,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,FAM90A1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,OLR1,PHC1,PRB3,PRB4,PRH1,PRH2,PRR4,PZP,RIMKLB,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.AA.3815.01A	12	8377359	133778682	8884	0.0087	NEUTRAL	NA	896	Too-Many
TCGA.AG.3881	12	8488288	11504090	883	0.3151	NEUTRAL	NA	59	"A2M,A2ML1,AICDA,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,OLR1,PHC1,PRB3,PRB4,PRH1,PRH2,PRR4,PZP,RIMKLB,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.A6.3810.01A	12	8608622	8618043	4	0.3303	NEUTRAL	NA	1	CLEC6A
TCGA.AA.A02K.01A	12	8608623	9021666	68	0.1365	NEUTRAL	NA	7	"A2ML1,AICDA,CLEC4D,CLEC4E,CLEC6A,MFAP5,RIMKLB"
TCGA.AA.3844	12	8622598	8705405	19	-0.0277	NEUTRAL	NA	3	"CLEC4D,CLEC4E,CLEC6A"
TCGA.A6.3810.01A	12	8628671	50146212	2477	-0.1005	NEUTRAL	NA	253	Too-Many
TCGA.DM.A28M.01A	12	8670723	25672765	1044	0.3596	NEUTRAL	NA	132	Too-Many
TCGA.DM.A1D7	12	8673276	9376350	195	0.2154	NEUTRAL	NA	11	"A2M,A2ML1,AICDA,CLEC4D,CLEC4E,KLRG1,M6PR,MFAP5,PHC1,PZP,RIMKLB"
TCGA.AZ.4684.01A	12	8687207	9027498	60	-0.1941	NEUTRAL	NA	5	"A2ML1,AICDA,CLEC4E,MFAP5,RIMKLB"
TCGA.AA.3509.01A	12	8687207	9070264	61	-0.2402	NEUTRAL	NA	6	"A2ML1,AICDA,CLEC4E,MFAP5,PHC1,RIMKLB"
TCGA.AA.3850	12	8687811	9621532	263	0.21415	NEUTRAL	NA	10	"A2M,A2ML1,AICDA,CLEC4E,KLRG1,M6PR,MFAP5,PHC1,PZP,RIMKLB"
TCGA.AA.3844	12	8709586	10909411	713	0.3703	NEUTRAL	NA	36	"A2M,A2ML1,AICDA,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,MFAP5,OLR1,PHC1,PZP,RIMKLB,STYK1,TMEM52B,YBX3"
TCGA.AG.A01L.01A	12	8756810	8804172	9	-0.3818	NEUTRAL	NA	2	"AICDA,MFAP5"
TCGA.AA.A010.01A	12	8756810	8925869	19	-0.4829	NEUTRAL	NA	3	"AICDA,MFAP5,RIMKLB"
TCGA.AA.3930.01A	12	8756810	9091852	68	0.2264	NEUTRAL	NA	5	"A2ML1,AICDA,MFAP5,PHC1,RIMKLB"
TCGA.AG.3906.01A	12	8759453	9087670	61	0.3089	NEUTRAL	NA	5	"A2ML1,AICDA,MFAP5,PHC1,RIMKLB"
TCGA.A6.5661	12	8780136	30967207	7804	0.1761	NEUTRAL	NA	154	Too-Many
TCGA.AG.A01L.01A	12	8806969	9004353	29	-0.077	NEUTRAL	NA	3	"A2ML1,MFAP5,RIMKLB"
TCGA.AG.3909.01A	12	8813376	8987180	12	0.3775	NEUTRAL	NA	3	"A2ML1,MFAP5,RIMKLB"
TCGA.CK.5914.01A	12	8902441	9086883	48	0.0258	NEUTRAL	NA	3	"A2ML1,PHC1,RIMKLB"
TCGA.AG.A01W.01A	12	8974288	30797585	1320	-0.2061	NEUTRAL	NA	151	Too-Many
TCGA.AA.A010.01A	12	8975187	8982263	4	0.0997	NEUTRAL	NA	1	A2ML1
TCGA.AA.A02E.01A	12	9000117	11338547	291	-0.1286	NEUTRAL	NA	50	"A2M,A2ML1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,OLR1,PHC1,PRH1,PRH2,PRR4,PZP,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.AA.A017.01A	12	9000117	133778682	8071	-0.0674	NEUTRAL	NA	889	Too-Many
TCGA.AG.A01L.01A	12	9009712	9085121	19	-0.0433	NEUTRAL	NA	2	"A2ML1,PHC1"
TCGA.AA.A00L.01A	12	9013428	9356316	75	-0.1133	NEUTRAL	NA	6	"A2M,A2ML1,KLRG1,M6PR,PHC1,PZP"
TCGA.AA.A010.01A	12	9020785	9027498	5	0.0242	NEUTRAL	NA	1	A2ML1
TCGA.AG.3909.01A	12	9070264	9098787	20	-9.00E-04	NEUTRAL	NA	2	"M6PR,PHC1"
TCGA.AA.3509.01A	12	9072324	18238509	586	0.2483	NEUTRAL	NA	94	"A2M,APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CD69,CDKN1B,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GABARAPL1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,LMO3,LOH12CR1,LRP6,M6PR,MAGOHB,MANSC1,MGP,MGST1,OLR1,PDE6H,PHC1,PLBD1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,PZP,RERG,RERGL,SLC15A5,SMCO3,SMIM10L1,STRAP,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,WBP11,YBX3"
TCGA.AA.A02H.01A	12	9075189	9246012	40	0.3403	NEUTRAL	NA	4	"A2M,KLRG1,M6PR,PHC1"
TCGA.AG.A00Y.01A	12	9082992	30906301	1247	-0.1694	NEUTRAL	NA	151	Too-Many
TCGA.AA.A02K.01A	12	9083021	19475474	673	0.0764	NEUTRAL	NA	98	"A2M,APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CAPZA3,CD69,CDKN1B,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GABARAPL1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,LMO3,LOH12CR1,LRP6,M6PR,MAGOHB,MANSC1,MGP,MGST1,OLR1,PDE6H,PHC1,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,PZP,RERG,RERGL,SLC15A5,SMCO3,SMIM10L1,STRAP,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,WBP11,YBX3"
TCGA.AA.A010.01A	12	9086449	9161975	18	-0.3401	NEUTRAL	NA	3	"KLRG1,M6PR,PHC1"
TCGA.CK.5914.01A	12	9087670	9098787	11	-0.488	NEUTRAL	NA	2	"M6PR,PHC1"
TCGA.AG.3906.01A	12	9089413	10321626	169	-0.1647	NEUTRAL	NA	20	"A2M,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,KLRB1,KLRF1,KLRF2,KLRG1,M6PR,OLR1,PHC1,PZP"
TCGA.AA.3930.01A	12	9094365	21422432	732	-0.0582	NEUTRAL	NA	104	Too-Many
TCGA.AG.A01L.01A	12	9094995	21391865	711	0.0451	NEUTRAL	NA	103	Too-Many
TCGA.AA.A01C.01A	12	9097966	9573936	82	-0.1181	NEUTRAL	NA	4	"A2M,KLRG1,M6PR,PZP"
TCGA.AG.A023.01A	12	9142173	9572536	76	0.0686	NEUTRAL	NA	3	"A2M,KLRG1,PZP"
TCGA.AA.A010.01A	12	9223028	9242456	12	-0.3275	NEUTRAL	NA	1	A2M
TCGA.AG.A00C.01A	12	9223028	10251360	138	-0.2488	NEUTRAL	NA	15	"A2M,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC9A,CLECL1,KLRB1,KLRF1,KLRF2,PZP"
TCGA.AG.A01J.01A	12	9227109	49047779	1886	0.0512	NEUTRAL	NA	213	Too-Many
TCGA.AA.A00N.01A	12	9242922	9305669	25	-0.0457	NEUTRAL	NA	2	"A2M,PZP"
TCGA.AA.A02H.01A	12	9247552	9913288	79	0.0532	NEUTRAL	NA	6	"A2M,CD69,CLEC2D,CLECL1,KLRB1,PZP"
TCGA.AA.A010.01A	12	9258784	9310314	18	0.0543	NEUTRAL	NA	2	"A2M,PZP"
TCGA.AA.3941	12	9258820	11555010	687	0.0569	NEUTRAL	NA	51	"A2M,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,MAGOHB,OLR1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PZP,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.AG.3909.01A	12	9262834	9303188	7	-0.2336	NEUTRAL	NA	2	"A2M,PZP"
TCGA.CK.5914.01A	12	9265914	10251360	122	-0.0704	NEUTRAL	NA	15	"A2M,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC9A,CLECL1,KLRB1,KLRF1,KLRF2,PZP"
TCGA.AA.3532	12	9271834	11495091	674	-0.04	NEUTRAL	NA	48	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,MAGOHB,OLR1,PRB3,PRB4,PRH1,PRH2,PRR4,PZP,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.AG.3909.01A	12	9304153	9360798	32	0.2824	NEUTRAL	NA	1	PZP
TCGA.CM.6677	12	9309994	45704184	10985	-0.292	NEUTRAL	NA	185	Too-Many
TCGA.DY.A0XA	12	9357576	10298164	323	-0.0159	NEUTRAL	NA	15	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,KLRB1,KLRF1,KLRF2,PZP"
TCGA.AA.A00L.01A	12	9360798	9822275	15	0.2737	NEUTRAL	NA	2	"KLRB1,PZP"
TCGA.AG.A032.01A	12	9360798	21604960	652	-0.1472	NEUTRAL	NA	103	Too-Many
TCGA.AG.3909.01A	12	9392100	9573936	6	-0.0495	NEUTRAL	NA	0	None
TCGA.AA.A00N.01A	12	9392100	10365687	103	-0.0766	NEUTRAL	NA	17	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRF1,KLRF2,OLR1,TMEM52B"
TCGA.AG.3909.01A	12	9577084	9596081	11	-0.4417	NEUTRAL	NA	0	None
TCGA.AA.A01C.01A	12	9580191	10228073	60	0.1037	NEUTRAL	NA	13	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC9A,CLECL1,KLRB1,KLRF1,KLRF2"
TCGA.AG.A023.01A	12	9580191	40761429	1404	0.0461	NEUTRAL	NA	168	Too-Many
TCGA.AG.A025.01A	12	9583133	11338547	168	0.0029	NEUTRAL	NA	44	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,MAGOHB,OLR1,PRH1,PRH2,PRR4,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.AA.3850	12	9626771	11567910	589	-0.28905	NEUTRAL	NA	49	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,MAGOHB,OLR1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.AA.A03J	12	9735685	46573315	10979	0.1441	NEUTRAL	NA	186	Too-Many
TCGA.AG.3909.01A	12	9747818	10251360	57	0.034	NEUTRAL	NA	13	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC9A,CLECL1,KLRB1,KLRF1,KLRF2"
TCGA.AA.A00Q.01A	12	9747818	14943378	341	0.1236	NEUTRAL	NA	73	"APOLD1,ATF7IP,BCL2L14,CD69,CDKN1B,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,CREBL2,DDX47,DUSP16,EMP1,ETV6,GABARAPL1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,LOH12CR1,LRP6,MAGOHB,MANSC1,OLR1,PLBD1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,WBP11,YBX3"
TCGA.AG.A01N.01A	12	9747818	40928780	1409	-0.0892	NEUTRAL	NA	169	Too-Many
TCGA.AA.A00L.01A	12	9833482	16035591	421	-0.0766	NEUTRAL	NA	83	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CD69,CDKN1B,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,CREBL2,DDX47,DUSP16,EMP1,EPS8,ERP27,ETV6,GABARAPL1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,LOH12CR1,LRP6,MAGOHB,MANSC1,MGP,OLR1,PDE6H,PLBD1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,RERG,SMCO3,SMIM10L1,STRAP,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,WBP11,YBX3"
TCGA.4N.A93T	12	9894662	23966614	4691	-0.469	NEUTRAL	NA	111	Too-Many
TCGA.AZ.6606	12	9937036	9993451	16	0.121	NEUTRAL	NA	1	KLRF1
TCGA.AZ.6606	12	10064016	10143497	48	-0.0061	NEUTRAL	NA	2	"CLEC12A,CLEC2A"
TCGA.AA.A010.01A	12	10145695	18892021	485	0.2682	NEUTRAL	NA	83	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CAPZA3,CDKN1B,CLEC12B,CLEC1A,CLEC1B,CLEC7A,CLEC9A,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GABARAPL1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRK1,LMO3,LOH12CR1,LRP6,MAGOHB,MANSC1,MGP,MGST1,OLR1,PDE6H,PIK3C2G,PLBD1,PLCZ1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,RERG,RERGL,SLC15A5,SMCO3,SMIM10L1,STRAP,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,WBP11,YBX3"
TCGA.AA.A01C.01A	12	10233794	10370605	21	-0.2668	NEUTRAL	NA	5	"CLEC1A,CLEC7A,GABARAPL1,OLR1,TMEM52B"
TCGA.AG.A00C.01A	12	10271020	10282532	7	0.2064	NEUTRAL	NA	1	CLEC7A
TCGA.CK.5914.01A	12	10271020	10532248	32	-0.4796	NEUTRAL	NA	7	"CLEC7A,GABARAPL1,KLRC4-KLRK1,KLRD1,KLRK1,OLR1,TMEM52B"
TCGA.AA.A02H.01A	12	10271020	10541288	33	-0.2647	NEUTRAL	NA	7	"CLEC7A,GABARAPL1,KLRC4-KLRK1,KLRD1,KLRK1,OLR1,TMEM52B"
TCGA.AG.A00C.01A	12	10312492	10342463	10	-0.1854	NEUTRAL	NA	2	"OLR1,TMEM52B"
TCGA.AG.3909.01A	12	10319282	10572936	33	0.244	NEUTRAL	NA	8	"GABARAPL1,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRK1,OLR1,TMEM52B"
TCGA.AG.A026	12	10350032	10926488	205	-0.4111	NEUTRAL	NA	11	"GABARAPL1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRK1,MAGOHB,STYK1,YBX3"
TCGA.AA.3660	12	10367885	10520992	60	-0.0922	NEUTRAL	NA	2	"GABARAPL1,KLRD1"
TCGA.AG.3906.01A	12	10370605	26220480	781	-0.0919	NEUTRAL	NA	106	Too-Many
TCGA.DC.6157	12	10410776	133777644	37768	-0.0293	NEUTRAL	NA	866	Too-Many
TCGA.AG.A00C.01A	12	10460584	12356117	142	-0.3214	NEUTRAL	NA	35	"BCL2L14,ETV6,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRK1,LRP6,MAGOHB,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,YBX3"
TCGA.AA.A01C.01A	12	10460584	31545499	1099	0.1063	NEUTRAL	NA	133	Too-Many
TCGA.AZ.6606	12	10518099	133777644	38020	-0.0175	NEUTRAL	NA	865	Too-Many
TCGA.AA.3660	12	10524823	11482757	242	0.3406	NEUTRAL	NA	29	"KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRK1,MAGOHB,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,YBX3"
TCGA.AG.3909.01A	12	10587020	10763194	17	0.0958	NEUTRAL	NA	3	"KLRC1,KLRC2,MAGOHB"
TCGA.AA.A02H.01A	12	10587020	11338547	61	0.1027	NEUTRAL	NA	22	"KLRC1,KLRC2,MAGOHB,PRH1,PRH2,PRR4,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,YBX3"
TCGA.AA.3861.01A	12	10602438	56631320	3346	0.2609	NEUTRAL	NA	380	Too-Many
TCGA.CK.5914.01A	12	10603044	10777198	15	-0.1801	NEUTRAL	NA	3	"KLRC1,MAGOHB,STYK1"
TCGA.F4.6461	12	10653896	29228283	6450	-0.4688	NEUTRAL	NA	116	Too-Many
TCGA.AZ.4684.01A	12	10762408	20832967	448	-0.2703	NEUTRAL	NA	71	"AEBP2,APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CAPZA3,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LMO3,LOH12CR1,LRP6,MAGOHB,MANSC1,MGP,MGST1,PDE3A,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,RERG,RERGL,SLC15A5,SMCO3,SMIM10L1,STRAP,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,WBP11,YBX3"
TCGA.CK.5914.01A	12	10780195	10865760	10	0.2475	NEUTRAL	NA	2	"STYK1,YBX3"
TCGA.AG.3909.01A	12	10853818	10862459	4	0.0598	NEUTRAL	NA	1	YBX3
TCGA.AG.3909.01A	12	10865760	10958603	6	-0.4506	NEUTRAL	NA	2	"TAS2R7,YBX3"
TCGA.AG.4009.01A	12	10871664	12814088	102	-0.0579	NEUTRAL	NA	31	"BCL2L14,CREBL2,DUSP16,ETV6,GPR19,LOH12CR1,LRP6,MANSC1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,YBX3"
TCGA.AF.4110	12	10880240	16616739	2029	-0.1623	NEUTRAL	NA	60	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LOH12CR1,LRP6,MANSC1,MGP,MGST1,PDE6H,PLBD1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,RERG,SLC15A5,SMCO3,SMIM10L1,STRAP,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,WBP11"
TCGA.AA.3989	12	10894662	10938287	22	-0.4693	NEUTRAL	NA	0	None
TCGA.AA.3488	12	10925794	133777644	37971	-0.0098	NEUTRAL	NA	856	Too-Many
TCGA.AG.A026	12	10926658	12274934	449	0.0336	NEUTRAL	NA	25	"BCL2L14,ETV6,LRP6,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9"
TCGA.AA.3982	12	10928178	11526288	114	-0.285	NEUTRAL	NA	21	"PRB1,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9"
TCGA.AA.3844	12	10930394	11504090	109	0.2421	NEUTRAL	NA	20	"PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9"
TCGA.AA.3811	12	10930394	11523564	112	-0.2361	NEUTRAL	NA	21	"PRB1,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9"
TCGA.AA.3530	12	10938287	133777644	37900	0.0154	NEUTRAL	NA	856	Too-Many
TCGA.DY.A0XA	12	10938287	133777644	37944	-0.0376	NEUTRAL	NA	856	Too-Many
TCGA.AA.3989	12	10942032	20721128	3276	-0.0006	NEUTRAL	NA	68	"AEBP2,APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CAPZA3,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LMO3,LOH12CR1,LRP6,MANSC1,MGP,MGST1,PDE3A,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,RERG,RERGL,SLC15A5,SMCO3,SMIM10L1,STRAP,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,WBP11"
TCGA.AG.A00H.01A	12	10954215	48084263	1527	0.1024	NEUTRAL	NA	165	Too-Many
TCGA.AG.3891.01A	12	11420087	11548334	19	-0.4865	NEUTRAL	NA	4	"PRB1,PRB2,PRB3,PRB4"
TCGA.CM.4750.01A	12	11420612	11905367	20	0.2742	NEUTRAL	NA	5	"ETV6,PRB1,PRB2,PRB3,PRB4"
TCGA.CI.6620	12	11526288	16273614	1757	-0.4031	NEUTRAL	NA	37	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LOH12CR1,LRP6,MANSC1,MGP,PDE6H,PLBD1,PRB2,PTPRO,RERG,SMCO3,STRAP,WBP11"
TCGA.CK.5914.01A	12	11547350	12419546	41	0.2047	NEUTRAL	NA	4	"BCL2L14,ETV6,LRP6,PRB2"
TCGA.AA.A02E.01A	12	11547350	19475203	347	-0.0773	NEUTRAL	NA	45	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CAPZA3,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LMO3,LOH12CR1,LRP6,MANSC1,MGP,MGST1,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PRB2,PTPRO,RERG,RERGL,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AA.A01Q.01A	12	11547350	26274961	612	0.0889	NEUTRAL	NA	75	"ABCC9,AEBP2,APOLD1,ARHGDIB,ART4,ATF7IP,BCAT1,BCL2L14,BHLHE41,C12orf60,C12orf77,C2CD5,CAPZA3,CASC1,CDKN1B,CMAS,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETNK1,ETV6,GOLT1B,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,GYS2,H2AFJ,HEBP1,HIST4H4,IAPP,KCNJ8,KIAA1467,KRAS,LDHB,LMNTD1,LMO3,LOH12CR1,LRMP,LRP6,LYRM5,MANSC1,MGP,MGST1,PDE3A,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PRB2,PTPRO,PYROXD1,RASSF8,RECQL,RERG,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO3,SOX5,SPX,ST8SIA1,STRAP,WBP11"
TCGA.AA.3524	12	11553367	13541312	817	0.0108	NEUTRAL	NA	17	"APOLD1,BCL2L14,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,ETV6,GPR19,GPRC5A,GPRC5D,GSG1,HEBP1,KIAA1467,LOH12CR1,LRP6,MANSC1"
TCGA.DM.A1DA	12	11553367	33293906	7892	-0.1121	NEUTRAL	NA	110	Too-Many
TCGA.A6.2671	12	11553367	133777644	37828	-0.2631	NEUTRAL	NA	834	Too-Many
TCGA.AA.3532	12	11553367	133777644	37854	0.1197	NEUTRAL	NA	834	Too-Many
TCGA.F5.6702	12	11553367	133777644	37728	-0.1254	NEUTRAL	NA	834	Too-Many
TCGA.D5.6898	12	11555010	16075809	1700	-0.2899	NEUTRAL	NA	36	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LOH12CR1,LRP6,MANSC1,MGP,PDE6H,PLBD1,PTPRO,RERG,SMCO3,STRAP,WBP11"
TCGA.AA.3867	12	11555010	28525196	5925	-0.1884	NEUTRAL	NA	91	"ABCC9,AEBP2,APOLD1,ARHGDIB,ARNTL2,ART4,ASUN,ATF7IP,BCAT1,BCL2L14,BHLHE41,C12orf60,C12orf71,C12orf77,C2CD5,CAPZA3,CASC1,CCDC91,CDKN1B,CMAS,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETNK1,ETV6,FGFR1OP2,GOLT1B,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,GYS2,H2AFJ,HEBP1,HIST4H4,IAPP,ITPR2,KCNJ8,KIAA1467,KLHL42,KRAS,LDHB,LMNTD1,LMO3,LOH12CR1,LRMP,LRP6,LYRM5,MANSC1,MANSC4,MED21,MGP,MGST1,MRPS35,PDE3A,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PTPRO,PYROXD1,RASSF8,RECQL,REP15,RERG,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SMCO3,SOX5,SPX,SSPN,ST8SIA1,STK38L,STRAP,TM7SF3,WBP11"
TCGA.AA.3556	12	11555010	133777644	37783	-0.0736	NEUTRAL	NA	834	Too-Many
TCGA.AA.3811	12	11564510	14737359	1292	0.0916	NEUTRAL	NA	20	"APOLD1,ATF7IP,BCL2L14,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,HEBP1,KIAA1467,LOH12CR1,LRP6,MANSC1,PLBD1"
TCGA.AA.3941	12	11564510	15023490	1364	0.3726	NEUTRAL	NA	27	"APOLD1,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LOH12CR1,LRP6,MANSC1,PLBD1,SMCO3,WBP11"
TCGA.AA.3982	12	11567910	14751271	1291	0.0903	NEUTRAL	NA	20	"APOLD1,ATF7IP,BCL2L14,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,HEBP1,KIAA1467,LOH12CR1,LRP6,MANSC1,PLBD1"
TCGA.AA.3850	12	11586162	12111262	266	0.13875	NEUTRAL	NA	1	ETV6
TCGA.CM.5864	12	11621348	133777644	37781	0.0099	NEUTRAL	NA	834	Too-Many
TCGA.AA.3660	12	11639062	12657194	414	0.3298	NEUTRAL	NA	6	"BCL2L14,DUSP16,ETV6,LOH12CR1,LRP6,MANSC1"
TCGA.AG.3891.01A	12	11802982	12974125	66	-0.074	NEUTRAL	NA	11	"APOLD1,BCL2L14,CDKN1B,CREBL2,DDX47,DUSP16,ETV6,GPR19,LOH12CR1,LRP6,MANSC1"
TCGA.AA.A02H.01A	12	11802982	19475203	346	0.1485	NEUTRAL	NA	44	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CAPZA3,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LMO3,LOH12CR1,LRP6,MANSC1,MGP,MGST1,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PTPRO,RERG,RERGL,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AG.A025.01A	12	11802982	48081622	1488	0.047	NEUTRAL	NA	143	Too-Many
TCGA.F4.6805	12	11870106	15145618	1306	0.0039	NEUTRAL	NA	31	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LOH12CR1,LRP6,MANSC1,MGP,PDE6H,PLBD1,SMCO3,WBP11"
TCGA.CM.4750.01A	12	11992042	133778682	8640	-0.1224	NEUTRAL	NA	834	Too-Many
TCGA.CK.5913	12	12033569	133777644	37595	0.0027	NEUTRAL	NA	834	Too-Many
TCGA.AA.A00N.01A	12	12038811	12279618	13	-0.0137	NEUTRAL	NA	3	"BCL2L14,ETV6,LRP6"
TCGA.AA.3977	12	12059451	12082446	7	-0.4821	NEUTRAL	NA	0	None
TCGA.AA.3977	12	12085776	133777644	37528	0.0143	NEUTRAL	NA	833	Too-Many
TCGA.AA.3850	12	12114779	13134371	340	0.36865	NEUTRAL	NA	13	"APOLD1,BCL2L14,CDKN1B,CREBL2,DDX47,DUSP16,GPR19,GPRC5A,GPRC5D,HEBP1,LOH12CR1,LRP6,MANSC1"
TCGA.AG.3731	12	12136522	14068696	848	-0.3065	NEUTRAL	NA	17	"APOLD1,BCL2L14,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,HEBP1,KIAA1467,LOH12CR1,LRP6,MANSC1"
TCGA.AG.3909.01A	12	12243647	12277450	7	-0.4457	NEUTRAL	NA	2	"BCL2L14,LRP6"
TCGA.AG.3909.01A	12	12278190	12510318	26	0.2185	NEUTRAL	NA	3	"LOH12CR1,LRP6,MANSC1"
TCGA.AG.A00C.01A	12	12397174	12938530	24	0.1624	NEUTRAL	NA	8	"APOLD1,CDKN1B,CREBL2,DUSP16,GPR19,LOH12CR1,LRP6,MANSC1"
TCGA.G5.6641	12	12561987	12834893	98	0.0583	NEUTRAL	NA	4	"CREBL2,DUSP16,GPR19,LOH12CR1"
TCGA.A6.5662	12	12606210	34553794	7713	0.0014	NEUTRAL	NA	108	Too-Many
TCGA.G5.6641	12	12838607	18851533	1990	-0.3262	NEUTRAL	NA	35	"APOLD1,ARHGDIB,ART4,ATF7IP,C12orf60,CDKN1B,DDX47,DERA,EMP1,EPS8,ERP27,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LMO3,MGP,MGST1,PDE6H,PIK3C2G,PLBD1,PLCZ1,PTPRO,RERG,RERGL,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AG.4009.01A	12	12873952	12974125	7	-0.1539	NEUTRAL	NA	3	"APOLD1,CDKN1B,DDX47"
TCGA.A6.6653	12	12902010	48181777	10541	0.0096	NEUTRAL	NA	138	Too-Many
TCGA.DC.4749	12	12927726	14291299	670	-0.4901	NEUTRAL	NA	9	"APOLD1,DDX47,EMP1,GPRC5A,GPRC5D,GRIN2B,GSG1,HEBP1,KIAA1467"
TCGA.AA.A00N.01A	12	12939794	13364401	46	0.1181	NEUTRAL	NA	8	"APOLD1,DDX47,EMP1,GPRC5A,GPRC5D,GSG1,HEBP1,KIAA1467"
TCGA.AG.3909.01A	12	12939794	14927394	115	0.2938	NEUTRAL	NA	14	"APOLD1,ATF7IP,DDX47,EMP1,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,PLBD1"
TCGA.AG.A00C.01A	12	12939794	15823727	197	-0.2699	NEUTRAL	NA	25	"APOLD1,ARHGDIB,ART4,ATF7IP,C12orf60,DDX47,EMP1,EPS8,ERP27,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,MGP,PDE6H,PLBD1,PTPRO,RERG,SMCO3,WBP11"
TCGA.AG.4009.01A	12	12974533	13128195	17	0.1535	NEUTRAL	NA	4	"DDX47,GPRC5A,GPRC5D,HEBP1"
TCGA.EI.6883	12	13004410	83671725	20724	0.0038	NEUTRAL	NA	491	Too-Many
TCGA.CK.5914.01A	12	13061183	14927394	103	0.3564	NEUTRAL	NA	12	"ATF7IP,EMP1,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,PLBD1"
TCGA.AG.3891.01A	12	13061183	19501295	278	-0.1761	NEUTRAL	NA	33	"ARHGDIB,ART4,ATF7IP,C12orf60,CAPZA3,DERA,EMP1,EPS8,ERP27,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LMO3,MGP,MGST1,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PTPRO,RERG,RERGL,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AA.3850	12	13148490	13559366	216	0.09575	NEUTRAL	NA	4	"EMP1,GSG1,HEBP1,KIAA1467"
TCGA.AG.4009.01A	12	13208448	13240035	14	0.0098	NEUTRAL	NA	2	"GSG1,KIAA1467"
TCGA.AG.4009.01A	12	13240809	13256326	6	-0.4407	NEUTRAL	NA	1	GSG1
TCGA.G4.6302	12	13270402	13336366	18	-0.3721	NEUTRAL	NA	0	None
TCGA.G4.6302	12	13336582	15609076	909	0.0132	NEUTRAL	NA	17	"ARHGDIB,ART4,ATF7IP,C12orf60,EMP1,ERP27,GRIN2B,GUCY2C,H2AFJ,HIST4H4,MGP,PDE6H,PLBD1,PTPRO,RERG,SMCO3,WBP11"
TCGA.CA.5255	12	13336582	133777644	37088	0.1695	NEUTRAL	NA	818	Too-Many
TCGA.AG.4009.01A	12	13364401	14018741	18	0.1676	NEUTRAL	NA	2	"EMP1,GRIN2B"
TCGA.AA.3850	12	13559575	14205272	351	-0.21995	NEUTRAL	NA	1	GRIN2B
TCGA.AA.3844	12	13638305	13671042	18	-0.247	NEUTRAL	NA	0	None
TCGA.AA.3844	12	13676365	15119103	501	0.3429	NEUTRAL	NA	13	"ARHGDIB,ART4,ATF7IP,C12orf60,ERP27,GRIN2B,GUCY2C,H2AFJ,HIST4H4,MGP,PLBD1,SMCO3,WBP11"
TCGA.CA.5254	12	13738987	133777644	36807	0.3228	NEUTRAL	NA	817	Too-Many
TCGA.AA.3688	12	13820304	133777644	36905	-0.0192	NEUTRAL	NA	817	Too-Many
TCGA.G4.6626	12	13893864	20335640	1989	0.0396	NEUTRAL	NA	28	"AEBP2,ARHGDIB,ART4,ATF7IP,C12orf60,CAPZA3,DERA,EPS8,ERP27,GRIN2B,GUCY2C,H2AFJ,HIST4H4,LMO3,MGP,MGST1,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PTPRO,RERG,RERGL,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AG.3731	12	14071005	14465588	119	0.1082	NEUTRAL	NA	1	GRIN2B
TCGA.AA.3850	12	14214635	14737359	116	0.30945	NEUTRAL	NA	2	"ATF7IP,PLBD1"
TCGA.AG.A026	12	14261514	14836304	136	0.0447	NEUTRAL	NA	3	"ATF7IP,GUCY2C,PLBD1"
TCGA.DC.4749	12	14299144	133777644	36682	0	NEUTRAL	NA	816	Too-Many
TCGA.AG.3731	12	14465975	15223229	224	-0.2915	NEUTRAL	NA	13	"ARHGDIB,ART4,ATF7IP,C12orf60,ERP27,GUCY2C,H2AFJ,HIST4H4,MGP,PDE6H,PLBD1,SMCO3,WBP11"
TCGA.AA.3939.01A	12	14576861	14609480	7	-0.2263	NEUTRAL	NA	1	ATF7IP
TCGA.AG.4009.01A	12	14576861	14849139	51	-0.1288	NEUTRAL	NA	3	"ATF7IP,GUCY2C,PLBD1"
TCGA.AA.3811	12	14751271	19065220	1252	-0.3281	NEUTRAL	NA	23	"ARHGDIB,ART4,C12orf60,CAPZA3,DERA,EPS8,ERP27,GUCY2C,H2AFJ,HIST4H4,LMO3,MGP,MGST1,PDE6H,PIK3C2G,PLCZ1,PTPRO,RERG,RERGL,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AA.3982	12	14757697	30884091	5682	-0.264	NEUTRAL	NA	77	"ABCC9,AEBP2,ARHGDIB,ARNTL2,ART4,ASUN,BCAT1,BHLHE41,C12orf60,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,DERA,EPS8,ERGIC2,ERP27,ETNK1,FAR2,FGFR1OP2,GOLT1B,GUCY2C,GYS2,H2AFJ,HIST4H4,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LMO3,LRMP,LYRM5,MANSC4,MED21,MGP,MGST1,MRPS35,OVCH1,PDE3A,PDE6H,PIK3C2G,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PTPRO,PYROXD1,RASSF8,RECQL,REP15,RERG,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SMCO3,SOX5,SPX,SSPN,ST8SIA1,STK38L,STRAP,TM7SF3,TMTC1,WBP11"
TCGA.AA.3850	12	14838468	16580196	555	-0.25625	NEUTRAL	NA	18	"ARHGDIB,ART4,C12orf60,DERA,EPS8,ERP27,GUCY2C,H2AFJ,HIST4H4,MGP,MGST1,PDE6H,PTPRO,RERG,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AG.4009.01A	12	14923665	14958915	15	0.2001	NEUTRAL	NA	5	"C12orf60,H2AFJ,HIST4H4,SMCO3,WBP11"
TCGA.AA.A00N.01A	12	14927953	14982283	17	-0.0853	NEUTRAL	NA	5	"ART4,C12orf60,H2AFJ,SMCO3,WBP11"
TCGA.AG.3909.01A	12	14927953	14982283	15	-0.4492	NEUTRAL	NA	5	"ART4,C12orf60,H2AFJ,SMCO3,WBP11"
TCGA.CK.5914.01A	12	14939959	14952515	9	-0.172	NEUTRAL	NA	1	WBP11
TCGA.AA.A00Q.01A	12	14944051	15475602	36	-0.1548	NEUTRAL	NA	10	"ARHGDIB,ART4,C12orf60,ERP27,MGP,PDE6H,PTPRO,RERG,SMCO3,WBP11"
TCGA.AG.A026	12	14959390	16487484	492	0.0954	NEUTRAL	NA	13	"ARHGDIB,ART4,C12orf60,DERA,EPS8,ERP27,MGP,PDE6H,PTPRO,RERG,SLC15A5,SMCO3,STRAP"
TCGA.AG.4009.01A	12	14975873	18576848	117	-0.0509	NEUTRAL	NA	16	"ARHGDIB,ART4,C12orf60,DERA,EPS8,ERP27,LMO3,MGP,MGST1,PDE6H,PIK3C2G,PTPRO,RERG,RERGL,SLC15A5,STRAP"
TCGA.AA.3941	12	15023556	19081767	1184	-0.2409	NEUTRAL	NA	16	"ARHGDIB,CAPZA3,DERA,EPS8,ERP27,LMO3,MGP,MGST1,PDE6H,PIK3C2G,PLCZ1,PTPRO,RERG,RERGL,SLC15A5,STRAP"
TCGA.AA.3862.01A	12	15035847	31131434	794	-0.2228	NEUTRAL	NA	71	"ABCC9,AEBP2,ARHGDIB,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,DERA,EPS8,ERGIC2,ERP27,ETNK1,FAR2,FGFR1OP2,GOLT1B,GYS2,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LMO3,LRMP,LYRM5,MANSC4,MED21,MGP,MGST1,MRPS35,OVCH1,PDE3A,PDE6H,PIK3C2G,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PTPRO,PYROXD1,RASSF8,RECQL,REP15,RERG,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,STRAP,TM7SF3,TMTC1,TSPAN11"
TCGA.CK.5914.01A	12	15067626	15087762	5	-0.2882	NEUTRAL	NA	1	ERP27
TCGA.AA.3844	12	15125619	15236298	50	0.2331	NEUTRAL	NA	1	PDE6H
TCGA.AA.3844	12	15252139	15616543	111	0.3199	NEUTRAL	NA	2	"PTPRO,RERG"
TCGA.CK.5914.01A	12	15261996	15370322	4	-0.4663	NEUTRAL	NA	1	RERG
TCGA.F4.6805	12	15267954	26749830	3866	-0.0057	NEUTRAL	NA	45	"ABCC9,AEBP2,BCAT1,BHLHE41,C12orf77,C2CD5,CAPZA3,CASC1,CMAS,DERA,EPS8,ETNK1,GOLT1B,GYS2,IAPP,ITPR2,KCNJ8,KRAS,LDHB,LMNTD1,LMO3,LRMP,LYRM5,MGST1,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PTPRO,PYROXD1,RASSF8,RECQL,RERG,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,SSPN,ST8SIA1,STRAP"
TCGA.AA.3524	12	15297358	48269409	9611	0.0124	NEUTRAL	NA	117	Too-Many
TCGA.AG.3611.01A	12	15475602	15656790	6	0.2194	NEUTRAL	NA	1	PTPRO
TCGA.AG.3731	12	15563706	19738944	1202	-0.2901	NEUTRAL	NA	13	"AEBP2,CAPZA3,DERA,EPS8,LMO3,MGST1,PIK3C2G,PLCZ1,PLEKHA5,PTPRO,RERGL,SLC15A5,STRAP"
TCGA.AF.6655	12	15609076	32661217	6078	0.0192	NEUTRAL	NA	75	"ABCC9,AEBP2,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,DDX11,DENND5B,DERA,EPS8,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IPO8,ITPR2,KCNJ8,KIAA1551,KLHL42,KRAS,LDHB,LMNTD1,LMO3,LRMP,LYRM5,MANSC4,MED21,METTL20,MGST1,MRPS35,OVCH1,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PTPRO,PYROXD1,RASSF8,RECQL,REP15,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,STRAP,TM7SF3,TMTC1,TSPAN11"
TCGA.G4.6586	12	15609076	133777644	36294	0.0052	NEUTRAL	NA	802	Too-Many
TCGA.G4.6322	12	15618897	21545011	1811	0.0261	NEUTRAL	NA	20	"AEBP2,CAPZA3,DERA,EPS8,IAPP,LMO3,MGST1,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PTPRO,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,STRAP"
TCGA.G4.6302	12	15618897	133777644	36282	0.002	NEUTRAL	NA	802	Too-Many
TCGA.G4.6315	12	15618897	133777644	36295	-0.1839	NEUTRAL	NA	802	Too-Many
TCGA.AA.A00Q.01A	12	15636880	19406854	84	0.1105	NEUTRAL	NA	12	"CAPZA3,DERA,EPS8,LMO3,MGST1,PIK3C2G,PLCZ1,PLEKHA5,PTPRO,RERGL,SLC15A5,STRAP"
TCGA.AA.3844	12	15641830	16568803	272	0.3358	NEUTRAL	NA	6	"DERA,EPS8,MGST1,PTPRO,SLC15A5,STRAP"
TCGA.AG.A00C.01A	12	15834102	16516711	23	0.0817	NEUTRAL	NA	5	"DERA,EPS8,MGST1,SLC15A5,STRAP"
TCGA.CK.4952.01A	12	15942036	25289434	405	0.0952	NEUTRAL	NA	36	"ABCC9,AEBP2,BCAT1,C12orf77,C2CD5,CAPZA3,CASC1,CMAS,DERA,EPS8,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,LMO3,LRMP,MGST1,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PYROXD1,RECQL,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,ST8SIA1,STRAP"
TCGA.AA.A00L.01A	12	16036468	16510495	12	0.3142	NEUTRAL	NA	4	"DERA,MGST1,SLC15A5,STRAP"
TCGA.AA.A00F.01A	12	16036468	16516711	13	0.2677	NEUTRAL	NA	4	"DERA,MGST1,SLC15A5,STRAP"
TCGA.CK.5914.01A	12	16036468	18658209	50	-0.2797	NEUTRAL	NA	7	"DERA,LMO3,MGST1,PIK3C2G,RERGL,SLC15A5,STRAP"
TCGA.G4.6295	12	16059861	133777644	36183	0.0058	NEUTRAL	NA	799	Too-Many
TCGA.D5.6898	12	16080648	41238248	7219	-0.0026	NEUTRAL	NA	86	"ABCC9,ABCD2,AEBP2,ALG10,ALG10B,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf40,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,CNTN1,CPNE8,DDX11,DENND5B,DERA,DNM1L,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IPO8,ITPR2,KCNJ8,KIAA1551,KIF21A,KLHL42,KRAS,LDHB,LMNTD1,LMO3,LRMP,LRRK2,LYRM5,MANSC4,MED21,METTL20,MGST1,MRPS35,MUC19,OVCH1,PDE3A,PIK3C2G,PKP2,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,RERGL,SLC15A5,SLC2A13,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AG.3909.01A	12	16109842	18641375	36	0.1854	NEUTRAL	NA	6	"DERA,LMO3,MGST1,PIK3C2G,RERGL,SLC15A5"
TCGA.AG.A026	12	16509065	16742386	86	-0.5022	NEUTRAL	NA	2	"LMO3,MGST1"
TCGA.AA.A00D.01A	12	16516711	18892021	26	-0.2237	NEUTRAL	NA	6	"CAPZA3,LMO3,MGST1,PIK3C2G,PLCZ1,RERGL"
TCGA.AA.A00L.01A	12	16516711	19285268	31	-0.1344	NEUTRAL	NA	7	"CAPZA3,LMO3,MGST1,PIK3C2G,PLCZ1,PLEKHA5,RERGL"
TCGA.AA.3844	12	16571447	19081767	683	-0.0003	NEUTRAL	NA	5	"CAPZA3,LMO3,PIK3C2G,PLCZ1,RERGL"
TCGA.AA.3660	12	16603112	18236022	433	-0.0755	NEUTRAL	NA	2	"LMO3,RERGL"
TCGA.AF.4110	12	16618688	39173473	6480	0.3081	NEUTRAL	NA	76	"ABCC9,AEBP2,ALG10,ALG10B,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IPO8,ITPR2,KCNJ8,KIAA1551,KLHL42,KRAS,LDHB,LMNTD1,LMO3,LRMP,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,PDE3A,PIK3C2G,PKP2,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,RERGL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AG.A00C.01A	12	16704129	18576848	24	-0.3782	NEUTRAL	NA	3	"LMO3,PIK3C2G,RERGL"
TCGA.AA.A00F.01A	12	16704129	19473456	35	-0.1692	NEUTRAL	NA	6	"CAPZA3,LMO3,PIK3C2G,PLCZ1,PLEKHA5,RERGL"
TCGA.AG.A026	12	16743164	16960999	57	0.132	NEUTRAL	NA	1	LMO3
TCGA.AG.A026	12	16964951	18252059	337	-0.5016	NEUTRAL	NA	1	RERGL
TCGA.CI.6620	12	17293444	31402689	5166	0.3598	NEUTRAL	NA	60	"ABCC9,AEBP2,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,DDX11,ERGIC2,ETNK1,FAR2,FGFR1OP2,GOLT1B,GYS2,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,OVCH1,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,RERGL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.D5.6539	12	17625604	28295322	3729	-0.0196	NEUTRAL	NA	51	"ABCC9,AEBP2,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPZA3,CASC1,CMAS,ETNK1,FGFR1OP2,GOLT1B,GYS2,IAPP,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,RERGL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3"
TCGA.AF.2692	12	17757179	133777644	35686	0.0486	NEUTRAL	NA	795	Too-Many
TCGA.CA.6715	12	17760572	72184746	15814	0.0169	NEUTRAL	NA	432	Too-Many
TCGA.DM.A1D7	12	18111572	27800882	3426	0.1449	NEUTRAL	NA	46	"ABCC9,AEBP2,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPZA3,CASC1,CMAS,ETNK1,FGFR1OP2,GOLT1B,GYS2,IAPP,ITPR2,KCNJ8,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MED21,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PPFIBP1,PYROXD1,RASSF8,RECQL,RERGL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3"
TCGA.AG.A026	12	18252201	31107954	4773	0.0554	NEUTRAL	NA	58	"ABCC9,AEBP2,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,ERGIC2,ETNK1,FAR2,FGFR1OP2,GOLT1B,GYS2,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,OVCH1,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.AG.A00C.01A	12	18641375	18691038	7	0.2571	NEUTRAL	NA	1	PIK3C2G
TCGA.CK.5914.01A	12	18691038	19475203	40	0.0954	NEUTRAL	NA	4	"CAPZA3,PIK3C2G,PLCZ1,PLEKHA5"
TCGA.AG.4009.01A	12	18691038	22778066	274	-0.0884	NEUTRAL	NA	23	"ABCC9,AEBP2,C2CD5,CAPZA3,CMAS,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SPX,ST8SIA1"
TCGA.AG.A00C.01A	12	18699207	18840996	11	-0.3707	NEUTRAL	NA	2	"PIK3C2G,PLCZ1"
TCGA.AG.A00C.01A	12	18847806	18854369	4	0.2829	NEUTRAL	NA	1	PLCZ1
TCGA.AG.A00C.01A	12	18858063	19440365	18	-0.2437	NEUTRAL	NA	3	"CAPZA3,PLCZ1,PLEKHA5"
TCGA.AA.3509.01A	12	18892021	20832967	51	-0.1347	NEUTRAL	NA	4	"AEBP2,CAPZA3,PDE3A,PLEKHA5"
TCGA.AA.3811	12	19065270	19873950	299	0.0746	NEUTRAL	NA	2	"AEBP2,PLEKHA5"
TCGA.AA.3850	12	19086892	19841658	273	0.17315	NEUTRAL	NA	2	"AEBP2,PLEKHA5"
TCGA.CK.4948.01B	12	19282682	19406854	4	-0.2271	NEUTRAL	NA	1	PLEKHA5
TCGA.AG.3909.01A	12	19285268	19436207	9	-0.0968	NEUTRAL	NA	1	PLEKHA5
TCGA.AA.A00L.01A	12	19406854	19506769	16	0.247	NEUTRAL	NA	1	PLEKHA5
TCGA.AA.A010.01A	12	19406854	26231930	345	0.1967	NEUTRAL	NA	30	"ABCC9,AEBP2,BCAT1,C12orf77,C2CD5,CASC1,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,KRAS,LDHB,LMNTD1,LRMP,LYRM5,PDE3A,PLEKHA5,PYROXD1,RASSF8,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,ST8SIA1"
TCGA.CK.4948.01B	12	19407930	28111396	524	0.2448	NEUTRAL	NA	47	"ABCC9,AEBP2,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CASC1,CMAS,ETNK1,FGFR1OP2,GOLT1B,GYS2,IAPP,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,PDE3A,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3"
TCGA.AG.A00C.01A	12	19473456	19626133	14	0.0994	NEUTRAL	NA	2	"AEBP2,PLEKHA5"
TCGA.AA.A00F.01A	12	19501295	21639391	115	-0.1516	NEUTRAL	NA	11	"AEBP2,IAPP,PDE3A,PLEKHA5,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1"
TCGA.AG.3909.01A	12	19506769	21654772	127	0.1891	NEUTRAL	NA	12	"AEBP2,GOLT1B,IAPP,PDE3A,PLEKHA5,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1"
TCGA.AA.A00N.01A	12	19512329	19626133	7	-0.1309	NEUTRAL	NA	2	"AEBP2,PLEKHA5"
TCGA.AA.A00Q.01A	12	19522588	21051314	42	0.1217	NEUTRAL	NA	5	"AEBP2,PDE3A,PLEKHA5,SLCO1B3,SLCO1C1"
TCGA.AA.A00D.01A	12	19522588	22199219	187	-0.0986	NEUTRAL	NA	18	"ABCC9,AEBP2,CMAS,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PLEKHA5,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SPX"
TCGA.AA.A00L.01A	12	19522588	22688169	221	-0.0872	NEUTRAL	NA	20	"ABCC9,AEBP2,C2CD5,CMAS,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PLEKHA5,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SPX,ST8SIA1"
TCGA.AA.A00A.01A	12	19522588	31944675	513	0.0302	NEUTRAL	NA	61	"ABCC9,AEBP2,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,DDX11,DENND5B,ERGIC2,ETNK1,FAM60A,FAR2,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,PDE3A,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.AG.3891.01A	12	19592631	26208235	314	-0.2679	NEUTRAL	NA	29	"ABCC9,AEBP2,BCAT1,C12orf77,C2CD5,CASC1,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,KRAS,LDHB,LMNTD1,LRMP,LYRM5,PDE3A,PYROXD1,RASSF8,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,ST8SIA1"
TCGA.AA.A02K.01A	12	19615397	31540491	705	0.0696	NEUTRAL	NA	57	"ABCC9,AEBP2,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,DDX11,DENND5B,ERGIC2,ETNK1,FAM60A,FAR2,FGFR1OP2,GOLT1B,GYS2,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,OVCH1,PDE3A,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.CK.5914.01A	12	19626133	20854224	24	0.3584	NEUTRAL	NA	3	"AEBP2,PDE3A,SLCO1C1"
TCGA.AA.A02E.01A	12	19626133	30884230	594	-0.023	NEUTRAL	NA	53	"ABCC9,AEBP2,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,ERGIC2,ETNK1,FAR2,FGFR1OP2,GOLT1B,GYS2,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,OVCH1,PDE3A,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1"
TCGA.AA.A00N.01A	12	19646717	20709528	8	0.3123	NEUTRAL	NA	2	"AEBP2,PDE3A"
TCGA.AG.A00C.01A	12	19646717	21661280	120	-0.3174	NEUTRAL	NA	11	"AEBP2,GOLT1B,IAPP,PDE3A,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1"
TCGA.AA.A02H.01A	12	19667558	27126937	389	0.2478	NEUTRAL	NA	35	"ABCC9,AEBP2,ASUN,BCAT1,BHLHE41,C12orf77,C2CD5,CASC1,CMAS,ETNK1,FGFR1OP2,GOLT1B,GYS2,IAPP,ITPR2,KCNJ8,KRAS,LDHB,LMNTD1,LRMP,LYRM5,PDE3A,PYROXD1,RASSF8,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,SSPN,ST8SIA1,TM7SF3"
TCGA.CK.6748	12	19827459	33196436	5021	0.329	NEUTRAL	NA	65	"ABCC9,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,DDX11,DENND5B,DNM1L,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IPO8,ITPR2,KCNJ8,KIAA1551,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,PDE3A,PKP2,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AA.3844	12	19836625	20235038	184	0.187	NEUTRAL	NA	0	None
TCGA.AA.3850	12	19845166	23899592	1340	-0.45635	NEUTRAL	NA	20	"ABCC9,C2CD5,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,ST8SIA1"
TCGA.AA.3941	12	19872153	24414759	1502	-0.2114	NEUTRAL	NA	20	"ABCC9,C2CD5,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,ST8SIA1"
TCGA.AA.3811	12	19874511	24895576	1692	-0.3407	NEUTRAL	NA	20	"ABCC9,C2CD5,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,ST8SIA1"
TCGA.G5.6641	12	20037425	20626442	206	-0.1305	NEUTRAL	NA	1	PDE3A
TCGA.AA.3952	12	20230356	20280026	15	0.0428	NEUTRAL	NA	0	None
TCGA.AA.3844	12	20238865	20672962	140	0.0652	NEUTRAL	NA	1	PDE3A
TCGA.AZ.4614	12	20240324	133777644	34434	0	NEUTRAL	NA	789	Too-Many
TCGA.G4.6626	12	20341457	23520490	994	-0.0123	NEUTRAL	NA	19	"ABCC9,C2CD5,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SPX,ST8SIA1"
TCGA.CK.6746	12	20501999	133777644	34691	0.0046	NEUTRAL	NA	789	Too-Many
TCGA.AA.3844	12	20734893	21076144	96	0.1518	NEUTRAL	NA	3	"PDE3A,SLCO1B3,SLCO1C1"
TCGA.AA.3989	12	20734893	21076144	96	-0.0677	NEUTRAL	NA	3	"PDE3A,SLCO1B3,SLCO1C1"
TCGA.AZ.4684.01A	12	20852462	21174343	31	0.2649	NEUTRAL	NA	3	"SLCO1B3,SLCO1B7,SLCO1C1"
TCGA.D5.6535	12	20962278	133777644	34640	0.015	NEUTRAL	NA	787	Too-Many
TCGA.F5.6811.01A	12	21098601	79506008	4366	0.0299	NEUTRAL	NA	442	Too-Many
TCGA.AA.3844	12	21099271	26723738	2080	0.2245	NEUTRAL	NA	28	"ABCC9,BCAT1,BHLHE41,C12orf77,C2CD5,CASC1,CMAS,ETNK1,GOLT1B,GYS2,IAPP,ITPR2,KCNJ8,KRAS,LDHB,LMNTD1,LRMP,LYRM5,PYROXD1,RASSF8,RECQL,SLCO1A2,SLCO1B1,SLCO1B7,SOX5,SPX,SSPN,ST8SIA1"
TCGA.AA.3989	12	21099271	67686931	13066	0.0161	NEUTRAL	NA	394	Too-Many
TCGA.AA.3872	12	21099271	76272676	15901	0	NEUTRAL	NA	433	Too-Many
TCGA.AG.4021	12	21126850	22174951	321	0.0342	NEUTRAL	NA	12	"ABCC9,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B7,SPX"
TCGA.CK.5914.01A	12	21220188	21654772	60	0.1769	NEUTRAL	NA	7	"GOLT1B,IAPP,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B7"
TCGA.AA.A00Q.01A	12	21294449	21623076	43	0.1901	NEUTRAL	NA	5	"IAPP,PYROXD1,RECQL,SLCO1A2,SLCO1B1"
TCGA.QL.A97D	12	21377457	71789501	14605	0.1559	NEUTRAL	NA	417	Too-Many
TCGA.AA.3939.01A	12	21427353	21454053	8	-0.0792	NEUTRAL	NA	1	SLCO1A2
TCGA.AZ.4684.01A	12	21427353	22837753	154	0.2018	NEUTRAL	NA	14	"ABCC9,C2CD5,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PYROXD1,RECQL,SLCO1A2,SPX,ST8SIA1"
TCGA.AG.A01L.01A	12	21457310	21668536	37	-0.0378	NEUTRAL	NA	5	"GOLT1B,IAPP,PYROXD1,RECQL,SLCO1A2"
TCGA.AA.3930.01A	12	21467465	31435599	564	-0.0501	NEUTRAL	NA	50	"ABCC9,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,DDX11,ERGIC2,ETNK1,FAM60A,FAR2,FGFR1OP2,GOLT1B,GYS2,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.G5.6641	12	21531436	22097830	173	-0.1551	NEUTRAL	NA	10	"ABCC9,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PYROXD1,RECQL,SLCO1A2,SPX"
TCGA.AA.A00N.01A	12	21593281	21630685	19	0.2795	NEUTRAL	NA	2	"PYROXD1,RECQL"
TCGA.AG.A032.01A	12	21608049	34178761	633	0.1757	NEUTRAL	NA	60	"ABCC9,ALG10,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,DDX11,DENND5B,DNM1L,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IPO8,ITPR2,KCNJ8,KIAA1551,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AA.A00Q.01A	12	21623876	21693294	25	-0.2131	NEUTRAL	NA	5	"GOLT1B,GYS2,PYROXD1,RECQL,SPX"
TCGA.G4.6322	12	21637224	99218242	22602	-0.0169	NEUTRAL	NA	507	Too-Many
TCGA.AA.A00F.01A	12	21643084	21693294	16	0.2223	NEUTRAL	NA	4	"GOLT1B,GYS2,RECQL,SPX"
TCGA.AG.A00C.01A	12	21665173	21711967	13	0.2966	NEUTRAL	NA	3	"GOLT1B,GYS2,SPX"
TCGA.AG.A01L.01A	12	21689858	50189271	1436	0.052	NEUTRAL	NA	137	Too-Many
TCGA.AG.3909.01A	12	21693294	21757359	14	0.0707	NEUTRAL	NA	1	GYS2
TCGA.CK.5914.01A	12	21693294	25260744	154	0.1194	NEUTRAL	NA	12	"ABCC9,BCAT1,C12orf77,C2CD5,CMAS,ETNK1,GYS2,KCNJ8,LDHB,LRMP,SOX5,ST8SIA1"
TCGA.AA.A00Q.01A	12	21695377	27181201	213	0.107	NEUTRAL	NA	24	"ABCC9,ASUN,BCAT1,BHLHE41,C12orf77,C2CD5,CASC1,CMAS,ETNK1,FGFR1OP2,GYS2,ITPR2,KCNJ8,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MED21,RASSF8,SOX5,SSPN,ST8SIA1,TM7SF3"
TCGA.AA.A00F.01A	12	21695377	27841931	268	-0.0858	NEUTRAL	NA	29	"ABCC9,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CASC1,CMAS,ETNK1,FGFR1OP2,GYS2,ITPR2,KCNJ8,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MED21,PPFIBP1,RASSF8,SMCO2,SOX5,SSPN,ST8SIA1,STK38L,TM7SF3"
TCGA.AG.A00C.01A	12	21712545	40715820	724	-0.2207	NEUTRAL	NA	63	"ABCC9,ABCD2,ALG10,ALG10B,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf40,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GYS2,H3F3C,IPO8,ITPR2,KCNJ8,KIAA1551,KIF21A,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LRRK2,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,RASSF8,REP15,SLC2A13,SMCO2,SOX5,SSPN,ST8SIA1,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AG.3881	12	21716740	22733729	273	0.0114	NEUTRAL	NA	7	"ABCC9,C2CD5,CMAS,GYS2,KCNJ8,LDHB,ST8SIA1"
TCGA.NH.A50U	12	21729095	22700847	258	0.2986	NEUTRAL	NA	7	"ABCC9,C2CD5,CMAS,GYS2,KCNJ8,LDHB,ST8SIA1"
TCGA.AG.3909.01A	12	21788439	21926239	9	-0.381	NEUTRAL	NA	2	"KCNJ8,LDHB"
TCGA.AG.3909.01A	12	21953928	22199219	39	0.2625	NEUTRAL	NA	2	"ABCC9,CMAS"
TCGA.AG.3909.01A	12	22354447	22666173	22	0.3534	NEUTRAL	NA	2	"C2CD5,ST8SIA1"
TCGA.AA.A00D.01A	12	22354447	22837753	37	-0.0624	NEUTRAL	NA	3	"C2CD5,ETNK1,ST8SIA1"
TCGA.AG.3909.01A	12	22670888	22837753	16	-0.3645	NEUTRAL	NA	2	"C2CD5,ETNK1"
TCGA.AA.A00N.01A	12	22676308	22837753	15	-0.4542	NEUTRAL	NA	2	"C2CD5,ETNK1"
TCGA.AA.A00L.01A	12	22696952	24102415	24	-0.4694	NEUTRAL	NA	3	"C2CD5,ETNK1,SOX5"
TCGA.AF.2693	12	23163452	23493160	108	0.0307	NEUTRAL	NA	0	None
TCGA.AA.3976	12	23457172	133777644	33824	0.274	NEUTRAL	NA	770	Too-Many
TCGA.G4.6626	12	23528256	24771640	460	-0.3946	NEUTRAL	NA	1	SOX5
TCGA.AG.3909.01A	12	23687101	25002668	24	0.3133	NEUTRAL	NA	2	"BCAT1,SOX5"
TCGA.AG.4009.01A	12	23687101	26274961	80	-0.0656	NEUTRAL	NA	10	"BCAT1,BHLHE41,C12orf77,CASC1,KRAS,LMNTD1,LRMP,LYRM5,RASSF8,SOX5"
TCGA.AA.3509.01A	12	23687101	28122280	253	0.13	NEUTRAL	NA	26	"ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,CASC1,FGFR1OP2,ITPR2,KLHL42,KRAS,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SOX5,SSPN,STK38L,TM7SF3"
TCGA.AZ.4684.01A	12	23687101	28122280	253	-0.3109	NEUTRAL	NA	26	"ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,CASC1,FGFR1OP2,ITPR2,KLHL42,KRAS,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SOX5,SSPN,STK38L,TM7SF3"
TCGA.AA.3858	12	23830820	133777644	33746	-0.0779	NEUTRAL	NA	770	Too-Many
TCGA.4N.A93T	12	23979981	37913468	4000	-0.0064	NEUTRAL	NA	48	"ALG10,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf71,C12orf77,CAPRIN2,CASC1,CCDC91,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,H3F3C,IPO8,ITPR2,KIAA1551,KLHL42,KRAS,LMNTD1,LRMP,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SOX5,SSPN,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AA.A00D.01A	12	24102415	27234891	99	8.00E-04	NEUTRAL	NA	17	"ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,CASC1,FGFR1OP2,ITPR2,KRAS,LMNTD1,LRMP,LYRM5,MED21,RASSF8,SOX5,SSPN,TM7SF3"
TCGA.AG.4021	12	24323240	24710423	161	-0.0138	NEUTRAL	NA	1	SOX5
TCGA.AA.A00L.01A	12	24365291	26274961	48	-0.0411	NEUTRAL	NA	10	"BCAT1,BHLHE41,C12orf77,CASC1,KRAS,LMNTD1,LRMP,LYRM5,RASSF8,SOX5"
TCGA.AF.2693	12	24395201	24396943	3	0.3361	NEUTRAL	NA	1	SOX5
TCGA.AA.3941	12	24414935	28230915	1513	0.223	NEUTRAL	NA	26	"ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,CASC1,FGFR1OP2,ITPR2,KLHL42,KRAS,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SOX5,SSPN,STK38L,TM7SF3"
TCGA.F4.6463	12	24433479	133777644	33511	0.3059	NEUTRAL	NA	770	Too-Many
TCGA.CM.5349	12	24435420	133777644	33509	-0.0096	NEUTRAL	NA	770	Too-Many
TCGA.AA.3850	12	24436552	28214311	1492	-0.01535	NEUTRAL	NA	26	"ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,CASC1,FGFR1OP2,ITPR2,KLHL42,KRAS,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SOX5,SSPN,STK38L,TM7SF3"
TCGA.AA.3660	12	24447569	24857132	158	-0.2495	NEUTRAL	NA	1	SOX5
TCGA.AA.3952	12	24686058	25982440	547	0.0447	NEUTRAL	NA	8	"BCAT1,C12orf77,CASC1,KRAS,LMNTD1,LRMP,LYRM5,SOX5"
TCGA.G4.6626	12	24771966	133777644	33384	-0.039	NEUTRAL	NA	769	Too-Many
TCGA.AA.3811	12	24898708	25590599	316	-0.0034	NEUTRAL	NA	6	"BCAT1,C12orf77,CASC1,KRAS,LRMP,LYRM5"
TCGA.QG.A5YW	12	24928158	133777644	33153	-0.0577	NEUTRAL	NA	769	Too-Many
TCGA.AG.4021	12	24930538	24979394	34	-0.1745	NEUTRAL	NA	1	BCAT1
TCGA.AG.4021	12	24981266	26425855	612	0.2337	NEUTRAL	NA	10	"BCAT1,BHLHE41,C12orf77,CASC1,KRAS,LMNTD1,LRMP,LYRM5,RASSF8,SSPN"
TCGA.AG.3909.01A	12	25147150	26274961	51	0.2669	NEUTRAL	NA	8	"BHLHE41,C12orf77,CASC1,KRAS,LMNTD1,LRMP,LYRM5,RASSF8"
TCGA.A6.6652	12	25223990	133777644	33157	-0.0011	NEUTRAL	NA	767	Too-Many
TCGA.AA.3660	12	25247705	25338273	24	-0.3411	NEUTRAL	NA	2	"CASC1,LRMP"
TCGA.CK.5914.01A	12	25261452	26274961	36	-0.3327	NEUTRAL	NA	6	"BHLHE41,CASC1,KRAS,LMNTD1,LYRM5,RASSF8"
TCGA.CK.4952.01A	12	25547885	70314711	3787	0.3725	NEUTRAL	NA	390	Too-Many
TCGA.AA.3811	12	25593415	25739372	69	-0.4295	NEUTRAL	NA	1	LMNTD1
TCGA.DM.A28M.01A	12	25705752	40944221	657	0.3402	NEUTRAL	NA	49	"ABCD2,ALG10,ALG10B,AMN1,ARNTL2,ASUN,BHLHE41,BICD1,C12orf40,C12orf71,CAPRIN2,CCDC91,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,H3F3C,IPO8,ITPR2,KIAA1551,KIF21A,KLHL42,LMNTD1,LRRK2,MANSC4,MED21,METTL20,MRPS35,MUC19,OVCH1,PKP2,PPFIBP1,PTHLH,RASSF8,REP15,SLC2A13,SMCO2,SSPN,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AA.3811	12	25739419	31261697	2238	-0.0847	NEUTRAL	NA	28	"ARNTL2,ASUN,BHLHE41,C12orf71,CAPRIN2,CCDC91,DDX11,ERGIC2,FAR2,FGFR1OP2,IPO8,ITPR2,KLHL42,LMNTD1,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SSPN,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.AA.3660	12	25789332	25860099	30	-0.0756	NEUTRAL	NA	1	LMNTD1
TCGA.AF.A56K	12	25997992	71789449	12888	-0.0011	NEUTRAL	NA	394	Too-Many
TCGA.AG.3575	12	26285544	133777644	32725	0.0114	NEUTRAL	NA	760	Too-Many
TCGA.AG.3891.01A	12	26348638	31435599	312	-0.1541	NEUTRAL	NA	26	"ARNTL2,ASUN,C12orf71,CAPRIN2,CCDC91,DDX11,ERGIC2,FAM60A,FAR2,FGFR1OP2,IPO8,ITPR2,KLHL42,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,SMCO2,SSPN,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.AA.A01Q.01A	12	26348638	40708957	407	0.1122	NEUTRAL	NA	45	"ABCD2,ALG10,ALG10B,AMN1,ARNTL2,ASUN,BICD1,C12orf40,C12orf71,CAPRIN2,CCDC91,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,H3F3C,IPO8,ITPR2,KIAA1551,KIF21A,KLHL42,LRRK2,MANSC4,MED21,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,REP15,SLC2A13,SMCO2,SSPN,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AA.A010.01A	12	26377169	26784752	37	-0.0068	NEUTRAL	NA	2	"ITPR2,SSPN"
TCGA.AG.3906.01A	12	26377169	31256189	308	-0.0288	NEUTRAL	NA	25	"ARNTL2,ASUN,C12orf71,CAPRIN2,CCDC91,DDX11,ERGIC2,FAR2,FGFR1OP2,IPO8,ITPR2,KLHL42,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,SMCO2,SSPN,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.AG.4009.01A	12	26377169	44180170	675	-0.1315	NEUTRAL	NA	56	"ABCD2,ADAMTS20,ALG10,ALG10B,AMN1,ARNTL2,ASUN,BICD1,C12orf40,C12orf71,CAPRIN2,CCDC91,CNTN1,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,GXYLT1,H3F3C,IPO8,IRAK4,ITPR2,KIAA1551,KIF21A,KLHL42,LRRK2,MANSC4,MED21,METTL20,MRPS35,MUC19,OVCH1,PDZRN4,PKP2,PPFIBP1,PPHLN1,PRICKLE1,PTHLH,PUS7L,REP15,SLC2A13,SMCO2,SSPN,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YAF2,YARS2,ZCRB1"
TCGA.AF.3914.01A	12	26377169	44189361	680	-0.0076	NEUTRAL	NA	57	"ABCD2,ADAMTS20,ALG10,ALG10B,AMN1,ARNTL2,ASUN,BICD1,C12orf40,C12orf71,CAPRIN2,CCDC91,CNTN1,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,GXYLT1,H3F3C,IPO8,IRAK4,ITPR2,KIAA1551,KIF21A,KLHL42,LRRK2,MANSC4,MED21,METTL20,MRPS35,MUC19,OVCH1,PDZRN4,PKP2,PPFIBP1,PPHLN1,PRICKLE1,PTHLH,PUS7L,REP15,SLC2A13,SMCO2,SSPN,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,TWF1,YAF2,YARS2,ZCRB1"
TCGA.AG.4021	12	26426170	28856942	849	-0.3793	NEUTRAL	NA	16	"ARNTL2,ASUN,C12orf71,CCDC91,FGFR1OP2,ITPR2,KLHL42,MANSC4,MED21,MRPS35,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,TM7SF3"
TCGA.AA.3660	12	26487518	26819878	164	0.2385	NEUTRAL	NA	1	ITPR2
TCGA.CK.5914.01A	12	26492287	27075495	65	0.2591	NEUTRAL	NA	2	"ASUN,ITPR2"
TCGA.AA.A00L.01A	12	26493088	33559754	303	0.0683	NEUTRAL	NA	36	"AMN1,ARNTL2,ASUN,BICD1,C12orf71,CAPRIN2,CCDC91,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,H3F3C,IPO8,ITPR2,KIAA1551,KLHL42,MANSC4,MED21,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AA.3952	12	26567439	26949648	161	0.0345	NEUTRAL	NA	1	ITPR2
TCGA.DT.5265	12	26597032	26741733	62	-0.4343	NEUTRAL	NA	1	ITPR2
TCGA.DT.5265	12	26749830	133777644	32472	0.0223	NEUTRAL	NA	759	Too-Many
TCGA.F4.6805	12	26752483	33583390	2632	-0.4167	NEUTRAL	NA	36	"AMN1,ARNTL2,ASUN,BICD1,C12orf71,CAPRIN2,CCDC91,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,H3F3C,IPO8,ITPR2,KIAA1551,KLHL42,MANSC4,MED21,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AA.A024.01A	12	26816571	48141287	808	-0.0101	NEUTRAL	NA	70	"ABCD2,ADAMTS20,ALG10,ALG10B,AMIGO2,AMN1,ANO6,ARID2,ARNTL2,ASUN,BICD1,C12orf40,C12orf71,CAPRIN2,CCDC91,CNTN1,CPNE8,DBX2,DDX11,DENND5B,DNM1L,ENDOU,ERGIC2,FAM60A,FAR2,FGD4,FGFR1OP2,GXYLT1,H3F3C,IPO8,IRAK4,ITPR2,KIAA1551,KIF21A,KLHL42,LRRK2,MANSC4,MED21,METTL20,MRPS35,MUC19,NELL2,OVCH1,PCED1B,PDZRN4,PKP2,PPFIBP1,PPHLN1,PRICKLE1,PTHLH,PUS7L,RAPGEF3,REP15,RPAP3,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SMCO2,STK38L,SYT10,TM7SF3,TMEM117,TMTC1,TSPAN11,TWF1,YAF2,YARS2,ZCRB1"
TCGA.AA.A010.01A	12	26834809	27455049	54	-0.0046	NEUTRAL	NA	7	"ASUN,C12orf71,FGFR1OP2,ITPR2,MED21,STK38L,TM7SF3"
TCGA.AA.3660	12	26847247	29002085	700	-0.1251	NEUTRAL	NA	16	"ARNTL2,ASUN,C12orf71,CCDC91,FGFR1OP2,ITPR2,KLHL42,MANSC4,MED21,MRPS35,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,TM7SF3"
TCGA.AA.A00N.01A	12	26943039	27475064	52	-0.2807	NEUTRAL	NA	7	"ASUN,C12orf71,FGFR1OP2,ITPR2,MED21,STK38L,TM7SF3"
TCGA.AG.3909.01A	12	26943039	27475064	52	-0.0874	NEUTRAL	NA	7	"ASUN,C12orf71,FGFR1OP2,ITPR2,MED21,STK38L,TM7SF3"
TCGA.F5.6465	12	27016564	133777644	32426	-0.0154	NEUTRAL	NA	758	Too-Many
TCGA.CK.5914.01A	12	27107040	27132675	10	0.3473	NEUTRAL	NA	2	"FGFR1OP2,TM7SF3"
TCGA.AG.3726	12	27123039	133777644	32387	0.0067	NEUTRAL	NA	756	Too-Many
TCGA.AA.A02H.01A	12	27128378	27542070	34	-0.3343	NEUTRAL	NA	5	"ARNTL2,C12orf71,MED21,STK38L,TM7SF3"
TCGA.CK.5914.01A	12	27133443	27475064	25	-0.4229	NEUTRAL	NA	4	"C12orf71,MED21,STK38L,TM7SF3"
TCGA.AG.3731	12	27184481	27475720	76	-0.2532	NEUTRAL	NA	2	"C12orf71,STK38L"
TCGA.DY.A1DG	12	27457965	33753652	2470	-0.4727	NEUTRAL	NA	30	"AMN1,ARNTL2,BICD1,CAPRIN2,CCDC91,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,H3F3C,IPO8,KIAA1551,KLHL42,MANSC4,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,SYT10,TMTC1,TSPAN11,YARS2"
TCGA.AG.3731	12	27480523	30235580	1063	0.0673	NEUTRAL	NA	13	"ARNTL2,CCDC91,ERGIC2,FAR2,KLHL42,MANSC4,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,SMCO2,TMTC1"
TCGA.AA.A00D.01A	12	27521158	39711837	275	-0.0136	NEUTRAL	NA	33	"ALG10,ALG10B,AMN1,ARNTL2,BICD1,CAPRIN2,CCDC91,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,H3F3C,IPO8,KIAA1551,KIF21A,KLHL42,MANSC4,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,REP15,SMCO2,SYT10,TMTC1,TSPAN11,YARS2"
TCGA.CK.5914.01A	12	27533158	27654845	21	0.0367	NEUTRAL	NA	2	"ARNTL2,SMCO2"
TCGA.D5.6926	12	27718776	58234261	7824	0.1279	NEUTRAL	NA	329	Too-Many
TCGA.AA.A010.01A	12	27786261	27835268	21	-0.1511	NEUTRAL	NA	1	PPFIBP1
TCGA.G4.6314	12	27797904	33293906	2184	-0.3224	NEUTRAL	NA	26	"AMN1,BICD1,CAPRIN2,CCDC91,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,H3F3C,IPO8,KIAA1551,KLHL42,MANSC4,METTL20,MRPS35,OVCH1,PKP2,PPFIBP1,PTHLH,REP15,TMTC1,TSPAN11,YARS2"
TCGA.AA.A00Q.01A	12	27820070	48075452	573	0.1338	NEUTRAL	NA	59	"ABCD2,ADAMTS20,ALG10,ALG10B,AMIGO2,AMN1,ANO6,ARID2,BICD1,C12orf40,CAPRIN2,CCDC91,CNTN1,CPNE8,DBX2,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,GXYLT1,H3F3C,IPO8,IRAK4,KIAA1551,KIF21A,KLHL42,LRRK2,MANSC4,METTL20,MRPS35,MUC19,NELL2,OVCH1,PCED1B,PDZRN4,PKP2,PPFIBP1,PPHLN1,PRICKLE1,PTHLH,PUS7L,REP15,RPAP3,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SYT10,TMEM117,TMTC1,TSPAN11,TWF1,YAF2,YARS2,ZCRB1"
TCGA.AA.A010.01A	12	27840267	27849476	6	0.2983	NEUTRAL	NA	2	"PPFIBP1,REP15"
TCGA.AA.A00F.01A	12	27844660	27876942	8	0.2612	NEUTRAL	NA	3	"MRPS35,PPFIBP1,REP15"
TCGA.AA.A00N.01A	12	27867642	28122280	16	-0.4276	NEUTRAL	NA	4	"KLHL42,MANSC4,MRPS35,PTHLH"
TCGA.CK.5914.01A	12	27867642	28412240	18	-0.3423	NEUTRAL	NA	5	"CCDC91,KLHL42,MANSC4,MRPS35,PTHLH"
TCGA.AG.3909.01A	12	27888348	29509262	39	0.2248	NEUTRAL	NA	7	"CCDC91,ERGIC2,FAR2,KLHL42,MANSC4,MRPS35,PTHLH"
TCGA.AA.A00F.01A	12	27888348	40728782	304	-0.1299	NEUTRAL	NA	33	"ABCD2,ALG10,ALG10B,AMN1,BICD1,C12orf40,CAPRIN2,CCDC91,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,H3F3C,IPO8,KIAA1551,KIF21A,KLHL42,LRRK2,MANSC4,METTL20,MRPS35,OVCH1,PKP2,PTHLH,SLC2A13,SYT10,TMTC1,TSPAN11,YARS2"
TCGA.AA.3844	12	28059186	30724940	1153	0.2131	NEUTRAL	NA	6	"CCDC91,ERGIC2,FAR2,OVCH1,PTHLH,TMTC1"
TCGA.NH.A50U	12	28059473	28536707	141	0.2804	NEUTRAL	NA	2	"CCDC91,PTHLH"
TCGA.AA.3941	12	28234022	28617225	93	-0.2894	NEUTRAL	NA	1	CCDC91
TCGA.D5.6539	12	28297446	29671843	517	0.3198	NEUTRAL	NA	5	"CCDC91,ERGIC2,FAR2,OVCH1,TMTC1"
TCGA.AA.A010.01A	12	28410066	30786980	81	-0.1119	NEUTRAL	NA	6	"CCDC91,ERGIC2,FAR2,IPO8,OVCH1,TMTC1"
TCGA.NH.A8F7	12	28480891	133777644	31869	5.00E-04	NEUTRAL	NA	744	Too-Many
TCGA.CM.6170	12	28507191	29579645	424	-0.5058	NEUTRAL	NA	3	"CCDC91,ERGIC2,FAR2"
TCGA.AZ.4684.01A	12	28636935	30893898	103	-0.0653	NEUTRAL	NA	7	"CAPRIN2,CCDC91,ERGIC2,FAR2,IPO8,OVCH1,TMTC1"
TCGA.DM.A282.01A	12	28636935	62696524	3048	0.0065	NEUTRAL	NA	328	Too-Many
TCGA.AA.3867	12	28651914	38661267	2274	-0.1179	NEUTRAL	NA	22	"ALG10,AMN1,BICD1,CAPRIN2,CCDC91,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,H3F3C,IPO8,KIAA1551,METTL20,OVCH1,PKP2,SYT10,TMTC1,TSPAN11,YARS2"
TCGA.AA.3941	12	28657884	29093523	200	-0.1247	NEUTRAL	NA	1	CCDC91
TCGA.AA.3850	12	28658478	29093523	198	-0.40965	NEUTRAL	NA	1	CCDC91
TCGA.CK.4948.01B	12	28701968	29519744	22	0.2392	NEUTRAL	NA	3	"CCDC91,ERGIC2,FAR2"
TCGA.NH.A50U	12	28860928	29053840	83	0.2803	NEUTRAL	NA	0	None
TCGA.NH.A50U	12	29066620	29916838	366	-0.3993	NEUTRAL	NA	4	"ERGIC2,FAR2,OVCH1,TMTC1"
TCGA.DY.A1DC	12	29112513	41163971	2716	0.0094	NEUTRAL	NA	30	"ABCD2,ALG10,ALG10B,AMN1,BICD1,C12orf40,CAPRIN2,CNTN1,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,H3F3C,IPO8,KIAA1551,KIF21A,LRRK2,METTL20,MUC19,OVCH1,PKP2,SLC2A13,SYT10,TMTC1,TSPAN11,YARS2"
TCGA.AA.3941	12	29114499	29419459	120	-0.0876	NEUTRAL	NA	1	FAR2
TCGA.AA.3850	12	29122649	30670846	738	-0.23335	NEUTRAL	NA	4	"ERGIC2,FAR2,OVCH1,TMTC1"
TCGA.D5.6533	12	29139099	29692365	220	-0.1807	NEUTRAL	NA	4	"ERGIC2,FAR2,OVCH1,TMTC1"
TCGA.AF.2693	12	29205344	133777644	31634	0.003	NEUTRAL	NA	743	Too-Many
TCGA.F4.6461	12	29231462	111311928	23668	0.0096	NEUTRAL	NA	566	Too-Many
TCGA.AA.3941	12	29420084	30724940	646	0.1014	NEUTRAL	NA	4	"ERGIC2,FAR2,OVCH1,TMTC1"
TCGA.CK.5914.01A	12	29423345	29485496	10	-0.3524	NEUTRAL	NA	1	FAR2
TCGA.CK.5914.01A	12	29486565	30814068	67	0.3108	NEUTRAL	NA	5	"ERGIC2,FAR2,IPO8,OVCH1,TMTC1"
TCGA.AG.3909.01A	12	29510504	29524409	6	-0.313	NEUTRAL	NA	1	ERGIC2
TCGA.CM.6170	12	29581775	133777644	31523	-0.2043	NEUTRAL	NA	741	Too-Many
TCGA.CK.4948.01B	12	29586637	57431282	2617	0.1661	NEUTRAL	NA	286	Too-Many
TCGA.D5.6539	12	29674019	29981705	123	-0.1568	NEUTRAL	NA	1	TMTC1
TCGA.DM.A1D7	12	29851718	89252666	16106	0.0434	NEUTRAL	NA	420	Too-Many
TCGA.NH.A50U	12	29923714	60870825	7821	0.2407	NEUTRAL	NA	322	Too-Many
TCGA.D5.6539	12	29999298	31071148	555	-0.1525	NEUTRAL	NA	2	"CAPRIN2,IPO8"
TCGA.CA.5797	12	30244033	133777644	31218	0.0658	NEUTRAL	NA	739	Too-Many
TCGA.AG.3731	12	30247972	31390639	574	0.0599	NEUTRAL	NA	4	"CAPRIN2,DDX11,IPO8,TSPAN11"
TCGA.AG.A020	12	30411086	133777644	31058	0.0253	NEUTRAL	NA	739	Too-Many
TCGA.AG.3881	12	30461250	31024016	258	0.0502	NEUTRAL	NA	2	"CAPRIN2,IPO8"
TCGA.AA.3850	12	30677177	33244231	942	0.34115	NEUTRAL	NA	15	"AMN1,BICD1,CAPRIN2,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,IPO8,KIAA1551,METTL20,PKP2,TSPAN11,YARS2"
TCGA.AA.A02H.01A	12	30805864	30843374	17	-0.1061	NEUTRAL	NA	1	IPO8
TCGA.CK.5914.01A	12	30815214	31144734	40	-0.1352	NEUTRAL	NA	3	"CAPRIN2,IPO8,TSPAN11"
TCGA.AG.3909.01A	12	30822070	31255115	52	-0.2725	NEUTRAL	NA	4	"CAPRIN2,DDX11,IPO8,TSPAN11"
TCGA.AA.A00N.01A	12	30826888	31242293	40	-0.495	NEUTRAL	NA	4	"CAPRIN2,DDX11,IPO8,TSPAN11"
TCGA.D5.6533	12	30846628	133777644	30782	-0.2145	NEUTRAL	NA	739	Too-Many
TCGA.AA.A010.01A	12	30883093	31106880	8	-0.2271	NEUTRAL	NA	2	"CAPRIN2,TSPAN11"
TCGA.AA.A02H.01A	12	30886518	38713911	141	-0.2767	NEUTRAL	NA	17	"ALG10,ALG10B,AMN1,BICD1,CAPRIN2,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,PKP2,SYT10,TSPAN11,YARS2"
TCGA.AA.3982	12	30888338	31049102	89	0.2326	NEUTRAL	NA	1	CAPRIN2
TCGA.AA.3509.01A	12	30903940	33529703	134	-0.1429	NEUTRAL	NA	15	"AMN1,BICD1,CAPRIN2,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,PKP2,SYT10,TSPAN11,YARS2"
TCGA.AA.3844	12	31054859	31055178	3	-0.5073	NEUTRAL	NA	0	None
TCGA.AA.3982	12	31054859	31070499	9	-0.4964	NEUTRAL	NA	0	None
TCGA.AA.3982	12	31071148	31182259	70	0.2959	NEUTRAL	NA	1	TSPAN11
TCGA.D5.6539	12	31074981	31510001	167	-0.2015	NEUTRAL	NA	3	"DDX11,FAM60A,TSPAN11"
TCGA.AG.A00Y.01A	12	31106880	33003671	121	0.1957	NEUTRAL	NA	13	"AMN1,BICD1,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,PKP2,TSPAN11,YARS2"
TCGA.AG.A026	12	31111617	31156500	39	-0.4724	NEUTRAL	NA	1	TSPAN11
TCGA.AA.3841	12	31115345	31171027	41	0.3038	NEUTRAL	NA	1	TSPAN11
TCGA.AG.A01W.01A	12	31132131	31183229	35	-0.3401	NEUTRAL	NA	1	TSPAN11
TCGA.F5.6863	12	31132478	133777644	30677	-0.005	NEUTRAL	NA	737	Too-Many
TCGA.QG.A5YX	12	31146634	133777644	30461	-0.0405	NEUTRAL	NA	737	Too-Many
TCGA.AG.A026	12	31161002	34244928	983	0.0615	NEUTRAL	NA	14	"ALG10,AMN1,BICD1,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,PKP2,SYT10,YARS2"
TCGA.AA.3841	12	31172896	31200441	12	-0.4223	NEUTRAL	NA	0	None
TCGA.AA.3982	12	31184033	31373340	38	-0.4146	NEUTRAL	NA	1	DDX11
TCGA.AG.3881	12	31184033	31406871	70	0.0579	NEUTRAL	NA	1	DDX11
TCGA.AG.A01W.01A	12	31189056	31203042	9	0.1549	NEUTRAL	NA	0	None
TCGA.AA.3841	12	31201716	63623152	8010	0.051	NEUTRAL	NA	323	Too-Many
TCGA.AA.A00N.01A	12	31242769	33592258	124	0.2675	NEUTRAL	NA	13	"AMN1,BICD1,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,PKP2,SYT10,YARS2"
TCGA.AA.A010.01A	12	31244616	31256481	14	0.1141	NEUTRAL	NA	1	DDX11
TCGA.CK.5914.01A	12	31249519	31256481	9	0.1026	NEUTRAL	NA	1	DDX11
TCGA.AG.3909.01A	12	31255816	40499013	203	0.2603	NEUTRAL	NA	20	"ABCD2,ALG10,ALG10B,AMN1,BICD1,C12orf40,CPNE8,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,KIF21A,METTL20,PKP2,SLC2A13,SYT10,YARS2"
TCGA.AG.3906.01A	12	31256481	31632506	25	0.2664	NEUTRAL	NA	3	"DDX11,DENND5B,FAM60A"
TCGA.AA.3844	12	31308760	31360639	12	-0.3672	NEUTRAL	NA	0	None
TCGA.AA.3952	12	31348926	133777644	30666	-0.1133	NEUTRAL	NA	735	Too-Many
TCGA.AA.3811	12	31360639	33265577	681	0.2192	NEUTRAL	NA	11	"AMN1,BICD1,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,PKP2,YARS2"
TCGA.AA.3982	12	31373393	32133525	249	0.3079	NEUTRAL	NA	6	"AMN1,DENND5B,FAM60A,H3F3C,KIAA1551,METTL20"
TCGA.A6.5661	12	31390639	48117706	3807	0.0743	NEUTRAL	NA	45	"ABCD2,ADAMTS20,ALG10,ALG10B,AMIGO2,AMN1,ANO6,ARID2,BICD1,C12orf40,CNTN1,CPNE8,DBX2,DENND5B,DNM1L,ENDOU,FAM60A,FGD4,GXYLT1,H3F3C,IRAK4,KIAA1551,KIF21A,LRRK2,METTL20,MUC19,NELL2,PCED1B,PDZRN4,PKP2,PPHLN1,PRICKLE1,PUS7L,RPAP3,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SYT10,TMEM117,TWF1,YAF2,YARS2,ZCRB1"
TCGA.AG.3731	12	31390902	32922005	543	-0.2945	NEUTRAL	NA	10	"AMN1,BICD1,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,YARS2"
TCGA.CI.6620	12	31406808	133777644	30595	0	NEUTRAL	NA	735	Too-Many
TCGA.DM.A28K	12	31406808	133777644	30581	0.0004	NEUTRAL	NA	735	Too-Many
TCGA.AG.3725	12	31410283	133777644	30609	0.0016	NEUTRAL	NA	735	Too-Many
TCGA.AA.A00J.01A	12	31435599	48380068	541	0.2736	NEUTRAL	NA	51	"ABCD2,ADAMTS20,ALG10,ALG10B,AMIGO2,AMN1,ANO6,ARID2,BICD1,C12orf40,CNTN1,COL2A1,CPNE8,DBX2,DENND5B,DNM1L,ENDOU,FAM60A,FGD4,GXYLT1,H3F3C,HDAC7,IRAK4,KIAA1551,KIF21A,LRRK2,METTL20,MUC19,NELL2,PCED1B,PDZRN4,PKP2,PPHLN1,PRICKLE1,PUS7L,RAPGEF3,RPAP3,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SYT10,TMEM106C,TMEM117,TWF1,VDR,YAF2,YARS2,ZCRB1"
TCGA.AA.3930.01A	12	31440527	32260228	39	0.2273	NEUTRAL	NA	7	"AMN1,BICD1,DENND5B,FAM60A,H3F3C,KIAA1551,METTL20"
TCGA.AG.3891.01A	12	31440527	32458583	41	0.1946	NEUTRAL	NA	7	"AMN1,BICD1,DENND5B,FAM60A,H3F3C,KIAA1551,METTL20"
TCGA.AA.3862.01A	12	31440527	56631320	2262	0.0441	NEUTRAL	NA	255	Too-Many
TCGA.CK.5914.01A	12	31450959	31595679	16	0.2381	NEUTRAL	NA	2	"DENND5B,FAM60A"
TCGA.AG.A01W.01A	12	31523762	37000219	101	-0.4008	NEUTRAL	NA	12	"ALG10,AMN1,BICD1,DENND5B,DNM1L,FGD4,H3F3C,KIAA1551,METTL20,PKP2,SYT10,YARS2"
TCGA.D5.6539	12	31542190	31906671	90	-0.0939	NEUTRAL	NA	3	"AMN1,DENND5B,METTL20"
TCGA.AA.A02K.01A	12	31568243	50031501	936	0.0707	NEUTRAL	NA	90	"ABCD2,ADAMTS20,ADCY6,ALG10,ALG10B,AMIGO2,AMN1,ANO6,ANP32D,ARF3,ARID2,ASB8,BICD1,C12orf40,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CNTN1,COL2A1,CPNE8,DBX2,DDN,DDX23,DENND5B,DHH,DNAJC22,DNM1L,ENDOU,FAM186B,FGD4,FKBP11,GXYLT1,H1FNT,H3F3C,HDAC7,IRAK4,KANSL2,KCNH3,KIAA1551,KIF21A,KMT2D,LALBA,LMBR1L,LRRK2,MCRS1,METTL20,MUC19,NELL2,OR10AD1,OR8S1,PCED1B,PDZRN4,PFKM,PKP2,PPHLN1,PRICKLE1,PRKAG1,PRPF40B,PRPH,PUS7L,RAPGEF3,RHEBL1,RND1,RPAP3,SCAF11,SENP1,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SPATS2,SYT10,TMEM106C,TMEM117,TROAP,TUBA1A,TUBA1B,TUBA1C,TWF1,VDR,WNT1,WNT10B,YAF2,YARS2,ZCRB1,ZNF641"
TCGA.AA.A01C.01A	12	31586039	54792332	1730	-0.0806	NEUTRAL	NA	201	Too-Many
TCGA.CK.5914.01A	12	31600456	31820569	8	-0.4756	NEUTRAL	NA	2	"DENND5B,METTL20"
TCGA.DC.4745	12	31612183	32957376	497	0.0008	NEUTRAL	NA	10	"AMN1,BICD1,DENND5B,DNM1L,FGD4,H3F3C,KIAA1551,METTL20,PKP2,YARS2"
TCGA.AZ.4323	12	31631818	37857750	900	0.3327	NEUTRAL	NA	12	"ALG10,AMN1,BICD1,DENND5B,DNM1L,FGD4,H3F3C,KIAA1551,METTL20,PKP2,SYT10,YARS2"
TCGA.AG.3906.01A	12	31648697	42716143	270	-0.0729	NEUTRAL	NA	25	"ABCD2,ALG10,ALG10B,AMN1,BICD1,C12orf40,CNTN1,CPNE8,DENND5B,DNM1L,FGD4,GXYLT1,H3F3C,KIAA1551,KIF21A,LRRK2,METTL20,MUC19,PDZRN4,PKP2,SLC2A13,SYT10,YAF2,YARS2,ZCRB1"
TCGA.AA.A02E.01A	12	31814838	48137262	496	-0.0462	NEUTRAL	NA	44	"ABCD2,ADAMTS20,ALG10,ALG10B,AMIGO2,AMN1,ANO6,ARID2,BICD1,C12orf40,CNTN1,CPNE8,DBX2,DNM1L,ENDOU,FGD4,GXYLT1,H3F3C,IRAK4,KIAA1551,KIF21A,LRRK2,METTL20,MUC19,NELL2,PCED1B,PDZRN4,PKP2,PPHLN1,PRICKLE1,PUS7L,RAPGEF3,RPAP3,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SYT10,TMEM117,TWF1,YAF2,YARS2,ZCRB1"
TCGA.CK.5914.01A	12	31825177	32260228	12	-0.1425	NEUTRAL	NA	4	"AMN1,BICD1,H3F3C,KIAA1551"
TCGA.AA.3693	12	31909907	33711563	664	0.0792	NEUTRAL	NA	8	"BICD1,DNM1L,FGD4,H3F3C,KIAA1551,PKP2,SYT10,YARS2"
TCGA.AG.3887	12	31925071	40394254	1258	0.3714	NEUTRAL	NA	15	"ABCD2,ALG10,ALG10B,BICD1,C12orf40,CPNE8,DNM1L,FGD4,H3F3C,KIAA1551,KIF21A,PKP2,SLC2A13,SYT10,YARS2"
TCGA.D5.6539	12	31925071	132008388	30196	-0.0349	NEUTRAL	NA	707	Too-Many
TCGA.AA.3516	12	31925071	133777644	30472	0.0055	NEUTRAL	NA	731	Too-Many
TCGA.AG.3581	12	31925071	133777644	30516	0.0085	NEUTRAL	NA	731	Too-Many
TCGA.DC.5337	12	31925071	133777644	30391	-0.0016	NEUTRAL	NA	731	Too-Many
TCGA.AA.A00A.01A	12	32133868	32875313	38	0.324	NEUTRAL	NA	4	"BICD1,DNM1L,FGD4,KIAA1551"
TCGA.AA.3982	12	32140097	32531538	177	0.285	NEUTRAL	NA	2	"BICD1,KIAA1551"
TCGA.AG.3881	12	32206696	32312546	56	0.069	NEUTRAL	NA	1	BICD1
TCGA.CK.5914.01A	12	32369141	32530421	10	0.3173	NEUTRAL	NA	1	BICD1
TCGA.AA.3930.01A	12	32369141	43945583	406	-0.1327	NEUTRAL	NA	23	"ABCD2,ADAMTS20,ALG10,ALG10B,BICD1,C12orf40,CNTN1,CPNE8,DNM1L,FGD4,GXYLT1,KIF21A,LRRK2,MUC19,PDZRN4,PKP2,PPHLN1,PRICKLE1,SLC2A13,SYT10,YAF2,YARS2,ZCRB1"
TCGA.AG.3891.01A	12	32480373	48152235	499	-0.1801	NEUTRAL	NA	40	"ABCD2,ADAMTS20,ALG10,ALG10B,AMIGO2,ANO6,ARID2,BICD1,C12orf40,CNTN1,CPNE8,DBX2,DNM1L,ENDOU,FGD4,GXYLT1,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PCED1B,PDZRN4,PKP2,PPHLN1,PRICKLE1,PUS7L,RAPGEF3,RPAP3,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SYT10,TMEM117,TWF1,YAF2,YARS2,ZCRB1"
TCGA.AA.3982	12	32545351	33115929	196	0.2952	NEUTRAL	NA	4	"DNM1L,FGD4,PKP2,YARS2"
TCGA.AG.4015	12	32746330	32875405	45	-0.4803	NEUTRAL	NA	2	"DNM1L,FGD4"
TCGA.CK.5914.01A	12	32777270	40734049	180	0.1119	NEUTRAL	NA	13	"ABCD2,ALG10,ALG10B,C12orf40,CPNE8,DNM1L,FGD4,KIF21A,LRRK2,PKP2,SLC2A13,SYT10,YARS2"
TCGA.AG.4015	12	32879345	50473432	3797	-0.1999	NEUTRAL	NA	93	"ABCD2,ADAMTS20,ADCY6,ALG10,ALG10B,AMIGO2,ANO6,ANP32D,AQP2,AQP5,AQP6,ARF3,ARID2,ASB8,ASIC1,BCDIN3D,C12orf40,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CNTN1,COL2A1,CPNE8,DBX2,DDN,DDX23,DHH,DNAJC22,DNM1L,ENDOU,FAIM2,FAM186B,FKBP11,FMNL3,GXYLT1,H1FNT,HDAC7,IRAK4,KANSL2,KCNH3,KIF21A,KMT2D,LALBA,LMBR1L,LRRK2,MCRS1,MUC19,NCKAP5L,NELL2,OR10AD1,OR8S1,PCED1B,PDZRN4,PFKM,PKP2,PPHLN1,PRICKLE1,PRKAG1,PRPF40B,PRPH,PUS7L,RACGAP1,RAPGEF3,RHEBL1,RND1,RPAP3,SCAF11,SENP1,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SPATS2,SYT10,TMBIM6,TMEM106C,TMEM117,TROAP,TUBA1A,TUBA1B,TUBA1C,TWF1,VDR,WNT1,WNT10B,YAF2,YARS2,ZCRB1,ZNF641"
TCGA.AA.A00A.01A	12	32883899	57958171	2154	0.0425	NEUTRAL	NA	290	Too-Many
TCGA.AA.A00K.01A	12	32906843	48177835	423	0.1947	NEUTRAL	NA	39	"ABCD2,ADAMTS20,ALG10,ALG10B,AMIGO2,ANO6,ARID2,C12orf40,CNTN1,CPNE8,DBX2,ENDOU,GXYLT1,HDAC7,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PCED1B,PDZRN4,PKP2,PPHLN1,PRICKLE1,PUS7L,RAPGEF3,RPAP3,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SYT10,TMEM117,TWF1,YAF2,YARS2,ZCRB1"
TCGA.AG.3881	12	32909845	133777644	30139	0.0529	NEUTRAL	NA	725	Too-Many
TCGA.AG.3731	12	32923053	59279659	6121	0.0589	NEUTRAL	NA	306	Too-Many
TCGA.AG.A00Y.01A	12	33021809	45725041	311	-0.3261	NEUTRAL	NA	26	"ABCD2,ADAMTS20,ALG10,ALG10B,ANO6,C12orf40,CNTN1,CPNE8,DBX2,GXYLT1,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PDZRN4,PKP2,PPHLN1,PRICKLE1,PUS7L,SLC2A13,SYT10,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.3982	12	33117949	33148738	16	-0.0977	NEUTRAL	NA	0	None
TCGA.AA.3715	12	33118154	53191936	4580	0.3652	NEUTRAL	NA	144	Too-Many
TCGA.AA.3982	12	33172879	33246359	26	0.2015	NEUTRAL	NA	0	None
TCGA.AA.3660	12	33196436	37857750	330	-0.1427	NEUTRAL	NA	2	"ALG10,SYT10"
TCGA.A6.2681	12	33196436	133777644	30008	0.1614	NEUTRAL	NA	724	Too-Many
TCGA.CK.6748	12	33200496	37880477	330	0.0293	NEUTRAL	NA	2	"ALG10,SYT10"
TCGA.AA.3941	12	33247385	34553794	303	-0.1999	NEUTRAL	NA	2	"ALG10,SYT10"
TCGA.AA.3811	12	33266611	47426532	2923	-0.2688	NEUTRAL	NA	30	"ABCD2,ADAMTS20,ALG10,ALG10B,ANO6,ARID2,C12orf40,CNTN1,CPNE8,DBX2,GXYLT1,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PDZRN4,PPHLN1,PRICKLE1,PUS7L,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SYT10,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.3844	12	33267122	42297966	1474	0.0554	NEUTRAL	NA	12	"ABCD2,ALG10,ALG10B,C12orf40,CNTN1,CPNE8,KIF21A,LRRK2,MUC19,PDZRN4,SLC2A13,SYT10"
TCGA.AA.3680	12	33303292	133777644	30000	0.001	NEUTRAL	NA	724	Too-Many
TCGA.AA.3982	12	33303865	33691009	122	-0.1262	NEUTRAL	NA	1	SYT10
TCGA.AA.3986	12	33312196	38655231	343	-0.0004	NEUTRAL	NA	2	"ALG10,SYT10"
TCGA.G4.6314	12	33312196	40099913	637	-0.3458	NEUTRAL	NA	7	"ABCD2,ALG10,ALG10B,C12orf40,CPNE8,KIF21A,SYT10"
TCGA.DM.A1DA	12	33312196	116311651	23878	-0.1246	NEUTRAL	NA	582	Too-Many
TCGA.AG.3885	12	33312196	133777644	29982	-0.0274	NEUTRAL	NA	724	Too-Many
TCGA.DM.A1HA	12	33312196	133777644	29979	-0.0097	NEUTRAL	NA	724	Too-Many
TCGA.F4.6805	12	33586880	133777644	29829	0.0071	NEUTRAL	NA	724	Too-Many
TCGA.AA.3693	12	33736807	68779412	8848	0.0163	NEUTRAL	NA	336	Too-Many
TCGA.DY.A1DG	12	33754657	133777644	29841	0.0081	NEUTRAL	NA	723	Too-Many
TCGA.CA.6716	12	33877395	67203338	8023	-0.2881	NEUTRAL	NA	330	Too-Many
TCGA.AF.6672	12	34256891	34680712	45	0.2435	NEUTRAL	NA	0	None
TCGA.AG.A026	12	34281700	34346430	12	0.092	NEUTRAL	NA	0	None
TCGA.AG.A01Y	12	34341237	34553794	30	-0.4331	NEUTRAL	NA	0	None
TCGA.RU.A8FL	12	34343751	34760330	37	-0.3824	NEUTRAL	NA	0	None
TCGA.AA.3712	12	34343751	133777644	29729	0.0029	NEUTRAL	NA	722	Too-Many
TCGA.G5.6233	12	34346430	34388768	10	-0.3328	NEUTRAL	NA	0	None
TCGA.AG.A026	12	34362751	34758265	33	-0.4213	NEUTRAL	NA	0	None
TCGA.D5.6537	12	34364212	34680712	28	-0.0043	NEUTRAL	NA	0	None
TCGA.AA.3666	12	34461110	133777644	29730	-0.0173	NEUTRAL	NA	722	Too-Many
TCGA.AD.6963	12	34482899	50366299	3363	-0.0313	NEUTRAL	NA	85	"ABCD2,ADAMTS20,ADCY6,ALG10B,AMIGO2,ANO6,ANP32D,AQP2,AQP5,ARF3,ARID2,ASB8,BCDIN3D,C12orf40,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CNTN1,COL2A1,CPNE8,DBX2,DDN,DDX23,DHH,DNAJC22,ENDOU,FAIM2,FAM186B,FKBP11,FMNL3,GXYLT1,H1FNT,HDAC7,IRAK4,KANSL2,KCNH3,KIF21A,KMT2D,LALBA,LMBR1L,LRRK2,MCRS1,MUC19,NCKAP5L,NELL2,OR10AD1,OR8S1,PCED1B,PDZRN4,PFKM,PPHLN1,PRICKLE1,PRKAG1,PRPF40B,PRPH,PUS7L,RAPGEF3,RHEBL1,RND1,RPAP3,SCAF11,SENP1,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SPATS2,TMBIM6,TMEM106C,TMEM117,TROAP,TUBA1A,TUBA1B,TUBA1C,TWF1,VDR,WNT1,WNT10B,YAF2,ZCRB1,ZNF641"
TCGA.AG.A01Y	12	34615718	71464671	9657	0.0283	NEUTRAL	NA	353	Too-Many
TCGA.AG.A026	12	34759582	38565635	45	0.1226	NEUTRAL	NA	0	None
TCGA.RU.A8FL	12	34775884	107817499	20831	-0.0484	NEUTRAL	NA	501	Too-Many
TCGA.CM.6679	12	34775884	133777644	29592	0.00055	NEUTRAL	NA	722	Too-Many
TCGA.G5.6641	12	34835836	43419496	1565	0.2303	NEUTRAL	NA	15	"ABCD2,ALG10B,C12orf40,CNTN1,CPNE8,GXYLT1,KIF21A,LRRK2,MUC19,PDZRN4,PPHLN1,PRICKLE1,SLC2A13,YAF2,ZCRB1"
TCGA.AF.6655	12	34835836	66763166	7742	0.02	NEUTRAL	NA	329	Too-Many
TCGA.AF.3913	12	34835836	113115999	21987	-0.0621	NEUTRAL	NA	561	Too-Many
TCGA.AG.A01W.01A	12	37333932	46661319	488	0.1677	NEUTRAL	NA	26	"ABCD2,ADAMTS20,ALG10B,ANO6,ARID2,C12orf40,CNTN1,CPNE8,DBX2,GXYLT1,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PDZRN4,PPHLN1,PRICKLE1,PUS7L,SCAF11,SLC2A13,SLC38A1,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AF.6672	12	37857750	133777644	29642	-0.0567	NEUTRAL	NA	722	Too-Many
TCGA.D5.6529	12	37857750	133777644	29690	0.2089	NEUTRAL	NA	722	Too-Many
TCGA.AF.3911	12	37880477	78395972	11727	0.034	NEUTRAL	NA	377	Too-Many
TCGA.AZ.4323	12	37880477	133777644	29587	0.0389	NEUTRAL	NA	722	Too-Many
TCGA.CK.6748	12	37890873	42234777	1130	0.3305	NEUTRAL	NA	10	"ABCD2,ALG10B,C12orf40,CNTN1,CPNE8,KIF21A,LRRK2,MUC19,PDZRN4,SLC2A13"
TCGA.EI.6508	12	37890873	67262771	7957	0.0136	NEUTRAL	NA	329	Too-Many
TCGA.AA.3949	12	37940820	38105608	9	0.2727	NEUTRAL	NA	0	None
TCGA.AG.4021	12	37940820	38655231	51	-0.0294	NEUTRAL	NA	0	None
TCGA.AG.3591	12	37940820	43813851	1686	0.1511	NEUTRAL	NA	16	"ABCD2,ADAMTS20,ALG10B,C12orf40,CNTN1,CPNE8,GXYLT1,KIF21A,LRRK2,MUC19,PDZRN4,PPHLN1,PRICKLE1,SLC2A13,YAF2,ZCRB1"
TCGA.AA.3812	12	37940820	133777644	29705	0.2647	NEUTRAL	NA	722	Too-Many
TCGA.4N.A93T	12	37961767	133777644	29682	-0.0424	NEUTRAL	NA	722	Too-Many
TCGA.AA.3949	12	38353815	133777644	29641	0.1509	NEUTRAL	NA	722	Too-Many
TCGA.AA.3685	12	38385511	133777644	29688	-0.1961	NEUTRAL	NA	722	Too-Many
TCGA.BM.6198	12	38504528	38783936	59	0.31795	NEUTRAL	NA	1	ALG10B
TCGA.AG.A026	12	38571219	39537102	230	0.3625	NEUTRAL	NA	2	"ALG10B,CPNE8"
TCGA.AG.A036.01A	12	38631278	61400210	2624	0.1917	NEUTRAL	NA	304	Too-Many
TCGA.AG.4021	12	38684120	47613069	2631	0.0377	NEUTRAL	NA	30	"ABCD2,ADAMTS20,ALG10B,AMIGO2,ANO6,ARID2,C12orf40,CNTN1,CPNE8,DBX2,GXYLT1,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PCED1B,PDZRN4,PPHLN1,PRICKLE1,PUS7L,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.3986	12	38684120	133777644	29604	0	NEUTRAL	NA	722	Too-Many
TCGA.AG.A032.01A	12	38710668	39708940	30	-0.1705	NEUTRAL	NA	3	"ALG10B,CPNE8,KIF21A"
TCGA.AG.3611.01A	12	38710668	42554354	159	-0.3189	NEUTRAL	NA	12	"ABCD2,ALG10B,C12orf40,CNTN1,CPNE8,GXYLT1,KIF21A,LRRK2,MUC19,PDZRN4,SLC2A13,YAF2"
TCGA.AA.A00L.01A	12	38713911	39711837	31	-0.0015	NEUTRAL	NA	3	"ALG10B,CPNE8,KIF21A"
TCGA.BM.6198	12	38801481	40244670	294	0.00185	NEUTRAL	NA	5	"ABCD2,C12orf40,CPNE8,KIF21A,SLC2A13"
TCGA.D5.6537	12	38900426	39433976	136	0.0255	NEUTRAL	NA	1	CPNE8
TCGA.AA.3850	12	39028852	41118671	577	-0.44245	NEUTRAL	NA	8	"ABCD2,C12orf40,CNTN1,CPNE8,KIF21A,LRRK2,MUC19,SLC2A13"
TCGA.AA.3867	12	39044360	60490364	5896	-0.1063	NEUTRAL	NA	303	Too-Many
TCGA.AA.3941	12	39045327	40857213	449	-0.182	NEUTRAL	NA	7	"ABCD2,C12orf40,CPNE8,KIF21A,LRRK2,MUC19,SLC2A13"
TCGA.AA.A02H.01A	12	39047646	42554354	170	0.3432	NEUTRAL	NA	11	"ABCD2,C12orf40,CNTN1,CPNE8,GXYLT1,KIF21A,LRRK2,MUC19,PDZRN4,SLC2A13,YAF2"
TCGA.AG.A016.01A	12	39047646	48380548	473	-0.1546	NEUTRAL	NA	37	"ABCD2,ADAMTS20,AMIGO2,ANO6,ARID2,C12orf40,CNTN1,COL2A1,CPNE8,DBX2,ENDOU,GXYLT1,HDAC7,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PCED1B,PDZRN4,PPHLN1,PRICKLE1,PUS7L,RAPGEF3,RPAP3,SCAF11,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SLC48A1,TMEM106C,TMEM117,TWF1,VDR,YAF2,ZCRB1"
TCGA.CM.4744.01A	12	39155877	133778682	7494	-0.0417	NEUTRAL	NA	721	Too-Many
TCGA.AF.4110	12	39177404	133777644	29505	-0.1807	NEUTRAL	NA	721	Too-Many
TCGA.AA.3660	12	39498878	41445955	567	-0.1113	NEUTRAL	NA	7	"ABCD2,C12orf40,CNTN1,KIF21A,LRRK2,MUC19,SLC2A13"
TCGA.AG.A026	12	39541511	133777644	29386	0	NEUTRAL	NA	720	Too-Many
TCGA.AA.A00L.01A	12	39713668	39761638	22	-0.4445	NEUTRAL	NA	1	KIF21A
TCGA.AG.A032.01A	12	39719582	43824108	181	-0.1211	NEUTRAL	NA	14	"ABCD2,ADAMTS20,C12orf40,CNTN1,GXYLT1,KIF21A,LRRK2,MUC19,PDZRN4,PPHLN1,PRICKLE1,SLC2A13,YAF2,ZCRB1"
TCGA.AA.A00L.01A	12	39763529	40722111	57	-0.1237	NEUTRAL	NA	5	"ABCD2,C12orf40,KIF21A,LRRK2,SLC2A13"
TCGA.AA.A00D.01A	12	39763529	40734049	59	-0.1207	NEUTRAL	NA	5	"ABCD2,C12orf40,KIF21A,LRRK2,SLC2A13"
TCGA.AA.A00N.01A	12	40034676	40223856	15	0.0668	NEUTRAL	NA	2	"C12orf40,SLC2A13"
TCGA.AA.A010.01A	12	40040114	40631764	25	-0.0551	NEUTRAL	NA	3	"C12orf40,LRRK2,SLC2A13"
TCGA.G4.6314	12	40130739	116382645	23291	0.0107	NEUTRAL	NA	575	Too-Many
TCGA.DC.4745	12	40296739	43284014	1105	-0.058	NEUTRAL	NA	10	"CNTN1,GXYLT1,LRRK2,MUC19,PDZRN4,PPHLN1,PRICKLE1,SLC2A13,YAF2,ZCRB1"
TCGA.AG.3887	12	40395820	133777644	29124	0.0014	NEUTRAL	NA	717	Too-Many
TCGA.AA.A00N.01A	12	40637312	40651010	5	0.3288	NEUTRAL	NA	1	LRRK2
TCGA.AG.3909.01A	12	40643579	40728782	29	0.1799	NEUTRAL	NA	1	LRRK2
TCGA.AA.A010.01A	12	40668383	40839274	61	0.1029	NEUTRAL	NA	2	"LRRK2,MUC19"
TCGA.AA.A01Q.01A	12	40713743	40760767	16	-0.4537	NEUTRAL	NA	1	LRRK2
TCGA.AG.A00C.01A	12	40716930	40761429	14	0.2421	NEUTRAL	NA	1	LRRK2
TCGA.AA.A00N.01A	12	40722111	40728782	2	-0.0445	NEUTRAL	NA	1	LRRK2
TCGA.AA.A00F.01A	12	40734049	40760767	10	0.2947	NEUTRAL	NA	1	LRRK2
TCGA.AA.A00L.01A	12	40753045	42706822	47	-0.0509	NEUTRAL	NA	7	"CNTN1,GXYLT1,LRRK2,MUC19,PDZRN4,YAF2,ZCRB1"
TCGA.CK.5914.01A	12	40760767	40840252	29	0.1496	NEUTRAL	NA	2	"LRRK2,MUC19"
TCGA.AA.A00F.01A	12	40761429	41966114	37	-0.2036	NEUTRAL	NA	4	"CNTN1,LRRK2,MUC19,PDZRN4"
TCGA.AG.3909.01A	12	40761429	42491665	41	0.2873	NEUTRAL	NA	5	"CNTN1,GXYLT1,LRRK2,MUC19,PDZRN4"
TCGA.AA.A01Q.01A	12	40761429	46321838	202	-0.0045	NEUTRAL	NA	19	"ADAMTS20,ANO6,ARID2,CNTN1,DBX2,GXYLT1,IRAK4,LRRK2,MUC19,NELL2,PDZRN4,PPHLN1,PRICKLE1,PUS7L,SCAF11,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AZ.4684.01A	12	40829848	40943336	57	0.2623	NEUTRAL	NA	1	MUC19
TCGA.AA.A00D.01A	12	40837886	42711540	45	-0.092	NEUTRAL	NA	6	"CNTN1,GXYLT1,MUC19,PDZRN4,YAF2,ZCRB1"
TCGA.A6.3808.01A	12	40857188	40942320	39	-0.5031	NEUTRAL	NA	1	MUC19
TCGA.AA.3941	12	40892328	42163048	505	-0.4934	NEUTRAL	NA	3	"CNTN1,MUC19,PDZRN4"
TCGA.AA.A00N.01A	12	40933311	40944221	17	0.065	NEUTRAL	NA	1	MUC19
TCGA.AG.A00C.01A	12	40935376	42499598	37	-0.3453	NEUTRAL	NA	4	"CNTN1,GXYLT1,MUC19,PDZRN4"
TCGA.AA.A010.01A	12	40948501	40959870	12	-0.0606	NEUTRAL	NA	1	MUC19
TCGA.DM.A28M.01A	12	40952967	44189361	133	0.3365	NEUTRAL	NA	12	"ADAMTS20,CNTN1,GXYLT1,IRAK4,MUC19,PDZRN4,PPHLN1,PRICKLE1,PUS7L,TWF1,YAF2,ZCRB1"
TCGA.CK.5914.01A	12	40962725	41312394	6	0.1142	NEUTRAL	NA	2	"CNTN1,MUC19"
TCGA.DY.A1DC	12	41198927	44984954	1232	0.0101	NEUTRAL	NA	13	"ADAMTS20,CNTN1,GXYLT1,IRAK4,NELL2,PDZRN4,PPHLN1,PRICKLE1,PUS7L,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.D5.6898	12	41238427	43871228	938	-0.3454	NEUTRAL	NA	8	"ADAMTS20,CNTN1,GXYLT1,PDZRN4,PPHLN1,PRICKLE1,YAF2,ZCRB1"
TCGA.AG.A023.01A	12	41302166	42481541	32	0.3227	NEUTRAL	NA	3	"CNTN1,GXYLT1,PDZRN4"
TCGA.AG.A01N.01A	12	41302166	48081622	255	-0.1063	NEUTRAL	NA	23	"ADAMTS20,AMIGO2,ANO6,ARID2,CNTN1,DBX2,GXYLT1,IRAK4,NELL2,PCED1B,PDZRN4,PPHLN1,PRICKLE1,PUS7L,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.A010.01A	12	41312394	42512762	35	-0.1579	NEUTRAL	NA	3	"CNTN1,GXYLT1,PDZRN4"
TCGA.AZ.4684.01A	12	41410455	46233095	172	0.2636	NEUTRAL	NA	16	"ADAMTS20,ANO6,ARID2,CNTN1,DBX2,GXYLT1,IRAK4,NELL2,PDZRN4,PPHLN1,PRICKLE1,PUS7L,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.CM.6172	12	41719525	44529059	986	-0.4881	NEUTRAL	NA	11	"ADAMTS20,GXYLT1,IRAK4,PDZRN4,PPHLN1,PRICKLE1,PUS7L,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.3850	12	41990207	42490950	206	-0.26035	NEUTRAL	NA	1	GXYLT1
TCGA.AA.3982	12	41993516	46945694	1459	-0.1811	NEUTRAL	NA	17	"ADAMTS20,ANO6,ARID2,DBX2,GXYLT1,IRAK4,NELL2,PPHLN1,PRICKLE1,PUS7L,SCAF11,SLC38A1,SLC38A2,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.3941	12	42163836	42490950	128	0.0428	NEUTRAL	NA	1	GXYLT1
TCGA.CK.6748	12	42234848	133777644	28510	0.0079	NEUTRAL	NA	712	Too-Many
TCGA.AG.A023.01A	12	42491274	45059235	109	-0.0622	NEUTRAL	NA	11	"ADAMTS20,GXYLT1,IRAK4,NELL2,PPHLN1,PRICKLE1,PUS7L,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.3850	12	42498399	43181273	218	0.23995	NEUTRAL	NA	5	"GXYLT1,PPHLN1,PRICKLE1,YAF2,ZCRB1"
TCGA.AG.3909.01A	12	42499598	42523507	4	-0.4618	NEUTRAL	NA	1	GXYLT1
TCGA.CK.5914.01A	12	42499598	42711540	12	-0.3016	NEUTRAL	NA	3	"GXYLT1,YAF2,ZCRB1"
TCGA.AG.A00C.01A	12	42503336	43763062	34	0.0609	NEUTRAL	NA	6	"ADAMTS20,GXYLT1,PPHLN1,PRICKLE1,YAF2,ZCRB1"
TCGA.AA.A00N.01A	12	42512762	42726406	13	-0.3162	NEUTRAL	NA	4	"GXYLT1,PPHLN1,YAF2,ZCRB1"
TCGA.AA.A00F.01A	12	42554354	42748904	13	0.2143	NEUTRAL	NA	3	"PPHLN1,YAF2,ZCRB1"
TCGA.AG.3909.01A	12	42554354	42839728	20	0.1275	NEUTRAL	NA	3	"PPHLN1,YAF2,ZCRB1"
TCGA.AA.A02H.01A	12	42555368	43777354	35	-0.2432	NEUTRAL	NA	5	"ADAMTS20,PPHLN1,PRICKLE1,YAF2,ZCRB1"
TCGA.AG.3611.01A	12	42555368	50052175	578	0.0251	NEUTRAL	NA	68	"ADAMTS20,ADCY6,AMIGO2,ANO6,ANP32D,ARF3,ARID2,ASB8,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DBX2,DDN,DDX23,DHH,DNAJC22,ENDOU,FAM186B,FKBP11,FMNL3,H1FNT,HDAC7,IRAK4,KANSL2,KCNH3,KMT2D,LALBA,LMBR1L,MCRS1,NELL2,OR10AD1,OR8S1,PCED1B,PFKM,PPHLN1,PRICKLE1,PRKAG1,PRPF40B,PRPH,PUS7L,RAPGEF3,RHEBL1,RND1,RPAP3,SCAF11,SENP1,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SPATS2,TMEM106C,TMEM117,TROAP,TUBA1A,TUBA1B,TUBA1C,TWF1,VDR,WNT1,WNT10B,YAF2,ZCRB1,ZNF641"
TCGA.AA.A00L.01A	12	42707443	42836391	15	0.3121	NEUTRAL	NA	2	"PPHLN1,ZCRB1"
TCGA.AA.A00F.01A	12	42768648	42839728	8	-0.212	NEUTRAL	NA	1	PPHLN1
TCGA.CK.5914.01A	12	42768648	43771116	23	-0.3346	NEUTRAL	NA	3	"ADAMTS20,PPHLN1,PRICKLE1"
TCGA.AA.A00D.01A	12	42768648	44171949	65	-0.1501	NEUTRAL	NA	5	"ADAMTS20,IRAK4,PPHLN1,PRICKLE1,PUS7L"
TCGA.AG.3906.01A	12	42778672	48145145	237	-0.1152	NEUTRAL	NA	20	"ADAMTS20,AMIGO2,ANO6,ARID2,DBX2,ENDOU,IRAK4,NELL2,PCED1B,PPHLN1,PRICKLE1,PUS7L,RAPGEF3,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4,TMEM117,TWF1"
TCGA.AA.A00L.01A	12	42839728	48111848	195	-0.1282	NEUTRAL	NA	19	"ADAMTS20,AMIGO2,ANO6,ARID2,DBX2,ENDOU,IRAK4,NELL2,PCED1B,PPHLN1,PRICKLE1,PUS7L,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4,TMEM117,TWF1"
TCGA.AA.A00F.01A	12	42840320	42866148	8	0.1698	NEUTRAL	NA	2	"PPHLN1,PRICKLE1"
TCGA.AG.3909.01A	12	42840320	42866148	8	-0.4762	NEUTRAL	NA	2	"PPHLN1,PRICKLE1"
TCGA.AA.3844	12	43120090	43597223	207	0.1321	NEUTRAL	NA	0	None
TCGA.AA.3941	12	43131532	43307404	92	0.0637	NEUTRAL	NA	0	None
TCGA.AA.3850	12	43183969	43307835	60	-0.18235	NEUTRAL	NA	0	None
TCGA.AA.3660	12	43223553	44914714	495	-0.1512	NEUTRAL	NA	6	"ADAMTS20,IRAK4,NELL2,PUS7L,TMEM117,TWF1"
TCGA.AA.3941	12	43307835	45422235	603	-0.2452	NEUTRAL	NA	7	"ADAMTS20,DBX2,IRAK4,NELL2,PUS7L,TMEM117,TWF1"
TCGA.AA.3850	12	43361129	43417973	25	-0.02535	NEUTRAL	NA	0	None
TCGA.G5.6641	12	43427307	54998213	3062	0.2867	NEUTRAL	NA	178	Too-Many
TCGA.F5.6464	12	43503453	46514299	784	-0.3792	NEUTRAL	NA	10	"ADAMTS20,ANO6,ARID2,DBX2,IRAK4,NELL2,PUS7L,SCAF11,TMEM117,TWF1"
TCGA.AA.3850	12	43539968	43605691	23	0.05375	NEUTRAL	NA	0	None
TCGA.AA.3844	12	43609899	45487649	502	0.1314	NEUTRAL	NA	7	"ADAMTS20,DBX2,IRAK4,NELL2,PUS7L,TMEM117,TWF1"
TCGA.AA.3850	12	43615648	44378313	215	-0.30345	NEUTRAL	NA	5	"ADAMTS20,IRAK4,PUS7L,TMEM117,TWF1"
TCGA.AG.3909.01A	12	43747960	43856647	25	0.1916	NEUTRAL	NA	1	ADAMTS20
TCGA.AA.A00F.01A	12	43747960	44177415	52	-0.1709	NEUTRAL	NA	3	"ADAMTS20,IRAK4,PUS7L"
TCGA.AG.A00C.01A	12	43769155	44136222	37	-0.4394	NEUTRAL	NA	2	"ADAMTS20,PUS7L"
TCGA.AA.A010.01A	12	43777354	43826070	10	-0.204	NEUTRAL	NA	1	ADAMTS20
TCGA.CK.5914.01A	12	43777354	43856647	18	0.103	NEUTRAL	NA	1	ADAMTS20
TCGA.AG.3591	12	43819297	48001769	1142	-0.1992	NEUTRAL	NA	15	"ADAMTS20,AMIGO2,ANO6,ARID2,DBX2,IRAK4,NELL2,PCED1B,PUS7L,SCAF11,SLC38A1,SLC38A2,SLC38A4,TMEM117,TWF1"
TCGA.AA.A010.01A	12	43826415	43856647	8	0.2604	NEUTRAL	NA	1	ADAMTS20
TCGA.AG.A032.01A	12	43833374	46233095	99	-0.0997	NEUTRAL	NA	9	"ADAMTS20,ANO6,ARID2,DBX2,IRAK4,NELL2,PUS7L,TMEM117,TWF1"
TCGA.AG.3909.01A	12	43858377	43945583	10	-0.3008	NEUTRAL	NA	1	ADAMTS20
TCGA.AA.A02H.01A	12	43858377	44537279	39	-0.1757	NEUTRAL	NA	5	"ADAMTS20,IRAK4,PUS7L,TMEM117,TWF1"
TCGA.D5.6898	12	43878321	133777644	27931	-0.0208	NEUTRAL	NA	707	Too-Many
TCGA.AA.A00N.01A	12	43925792	43945583	3	-0.4579	NEUTRAL	NA	1	ADAMTS20
TCGA.CK.5914.01A	12	43925792	44177415	20	-0.1896	NEUTRAL	NA	3	"ADAMTS20,IRAK4,PUS7L"
TCGA.DC.6155	12	44039646	45234988	303	0.2553	NEUTRAL	NA	5	"IRAK4,NELL2,PUS7L,TMEM117,TWF1"
TCGA.AA.3930.01A	12	44124127	44164981	10	0.1471	NEUTRAL	NA	2	"IRAK4,PUS7L"
TCGA.AA.3967.01A	12	44124127	53693495	1295	0.1499	NEUTRAL	NA	144	Too-Many
TCGA.AG.A00C.01A	12	44139798	44167719	8	-0.0818	NEUTRAL	NA	2	"IRAK4,PUS7L"
TCGA.AG.3909.01A	12	44139798	44180170	13	-0.0047	NEUTRAL	NA	2	"IRAK4,PUS7L"
TCGA.AA.A00N.01A	12	44161887	44176063	8	-0.0912	NEUTRAL	NA	1	IRAK4
TCGA.AA.A010.01A	12	44165976	44781831	23	-0.3523	NEUTRAL	NA	3	"IRAK4,TMEM117,TWF1"
TCGA.AA.3930.01A	12	44171949	49578753	494	0.1061	NEUTRAL	NA	51	"ADCY6,AMIGO2,ANO6,ANP32D,ARF3,ARID2,ASB8,C12orf54,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DBX2,DDN,DDX23,DHH,ENDOU,FKBP11,H1FNT,HDAC7,IRAK4,KANSL2,KMT2D,LALBA,LMBR1L,NELL2,OR10AD1,OR8S1,PCED1B,PFKM,PRKAG1,RAPGEF3,RHEBL1,RND1,RPAP3,SCAF11,SENP1,SLC38A1,SLC38A2,SLC38A4,SLC48A1,TMEM106C,TMEM117,TUBA1A,TUBA1B,TWF1,VDR,WNT1,WNT10B,ZNF641"
TCGA.AA.A00F.01A	12	44180170	44238417	10	0.3264	NEUTRAL	NA	3	"IRAK4,TMEM117,TWF1"
TCGA.DM.A28M.01A	12	44193154	46754842	111	0.3305	NEUTRAL	NA	9	"ANO6,ARID2,DBX2,NELL2,SCAF11,SLC38A1,SLC38A2,TMEM117,TWF1"
TCGA.AF.3914.01A	12	44238417	45814826	48	-0.0368	NEUTRAL	NA	4	"ANO6,DBX2,NELL2,TMEM117"
TCGA.CI.6624	12	44336374	44580710	56	-0.3255	NEUTRAL	NA	1	TMEM117
TCGA.AG.3909.01A	12	44337966	45173396	21	0.2856	NEUTRAL	NA	2	"NELL2,TMEM117"
TCGA.AG.A00C.01A	12	44337966	45268980	23	-0.2593	NEUTRAL	NA	2	"NELL2,TMEM117"
TCGA.AA.A00D.01A	12	44337966	45417450	26	-0.2639	NEUTRAL	NA	3	"DBX2,NELL2,TMEM117"
TCGA.AA.A00F.01A	12	44337966	46321838	75	-0.1814	NEUTRAL	NA	6	"ANO6,ARID2,DBX2,NELL2,SCAF11,TMEM117"
TCGA.AG.4009.01A	12	44337966	48091329	133	-0.1129	NEUTRAL	NA	12	"AMIGO2,ANO6,ARID2,DBX2,NELL2,PCED1B,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4,TMEM117"
TCGA.SS.A7HO	12	44398253	58993363	3761	0.3223	NEUTRAL	NA	283	Too-Many
TCGA.CM.6172	12	44548456	50966979	1547	0.3033	NEUTRAL	NA	77	"ADCY6,AMIGO2,ANO6,ANP32D,AQP2,AQP5,AQP6,ARF3,ARID2,ASB8,ASIC1,BCDIN3D,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CERS5,COL2A1,COX14,DBX2,DDN,DDX23,DHH,DIP2B,DNAJC22,ENDOU,FAIM2,FAM186A,FAM186B,FKBP11,FMNL3,GPD1,H1FNT,HDAC7,KANSL2,KCNH3,KMT2D,LALBA,LARP4,LIMA1,LMBR1L,MCRS1,NCKAP5L,NELL2,OR10AD1,OR8S1,PCED1B,PFKM,PRKAG1,PRPF40B,PRPH,RACGAP1,RAPGEF3,RHEBL1,RND1,RPAP3,SCAF11,SENP1,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SMARCD1,SPATS2,TMBIM6,TMEM106C,TMEM117,TROAP,TUBA1A,TUBA1B,TUBA1C,VDR,WNT1,WNT10B,ZNF641"
TCGA.EI.6507	12	44580710	126124202	24500	0.3456	NEUTRAL	NA	669	Too-Many
TCGA.CI.6624	12	44583824	133777644	27747	0.045	NEUTRAL	NA	703	Too-Many
TCGA.CK.5914.01A	12	44605026	46754842	105	0.1664	NEUTRAL	NA	8	"ANO6,ARID2,DBX2,NELL2,SCAF11,SLC38A1,SLC38A2,TMEM117"
TCGA.AA.A02H.01A	12	44605026	48080516	124	0.3731	NEUTRAL	NA	12	"AMIGO2,ANO6,ARID2,DBX2,NELL2,PCED1B,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4,TMEM117"
TCGA.AG.3742	12	44729861	133777644	27583	-0.0071	NEUTRAL	NA	703	Too-Many
TCGA.AA.3860	12	44835345	74416561	8472	0.0401	NEUTRAL	NA	342	Too-Many
TCGA.DY.A1DC	12	45014251	58522300	3401	0.0119	NEUTRAL	NA	282	Too-Many
TCGA.AA.3850	12	45035990	47282530	559	-0.20745	NEUTRAL	NA	8	"ANO6,ARID2,DBX2,NELL2,SCAF11,SLC38A1,SLC38A2,SLC38A4"
TCGA.AA.3660	12	45045536	45930696	232	-0.2228	NEUTRAL	NA	3	"ANO6,DBX2,NELL2"
TCGA.AG.A023.01A	12	45097462	48082847	114	0.2269	NEUTRAL	NA	11	"AMIGO2,ANO6,ARID2,DBX2,NELL2,PCED1B,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4"
TCGA.AG.3909.01A	12	45209742	45567476	8	-0.3606	NEUTRAL	NA	2	"DBX2,NELL2"
TCGA.AG.A00C.01A	12	45269543	45725041	8	0.1242	NEUTRAL	NA	3	"ANO6,DBX2,NELL2"
TCGA.AA.3941	12	45427984	46945694	374	0.2339	NEUTRAL	NA	6	"ANO6,ARID2,DBX2,SCAF11,SLC38A1,SLC38A2"
TCGA.AA.A00D.01A	12	45429753	45725041	7	0.3607	NEUTRAL	NA	2	"ANO6,DBX2"
TCGA.BM.6198	12	45518177	51208121	1339	-0.09215	NEUTRAL	NA	75	"ADCY6,AMIGO2,ANO6,ANP32D,AQP2,AQP5,AQP6,ARF3,ARID2,ASB8,ASIC1,ATF1,BCDIN3D,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CERS5,COL2A1,COX14,DDN,DDX23,DHH,DIP2B,DNAJC22,ENDOU,FAIM2,FAM186A,FAM186B,FKBP11,FMNL3,GPD1,H1FNT,HDAC7,KANSL2,KCNH3,KMT2D,LALBA,LARP4,LIMA1,LMBR1L,MCRS1,NCKAP5L,OR10AD1,OR8S1,PCED1B,PFKM,PRKAG1,PRPF40B,PRPH,RACGAP1,RAPGEF3,RHEBL1,RND1,RPAP3,SCAF11,SENP1,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SMARCD1,SPATS2,TMBIM6,TMEM106C,TROAP,TUBA1A,TUBA1B,TUBA1C,VDR,WNT1,WNT10B,ZNF641"
TCGA.AG.3909.01A	12	45695739	46633410	65	0.3775	NEUTRAL	NA	4	"ANO6,ARID2,SCAF11,SLC38A1"
TCGA.CM.6677	12	45715286	49582691	1046	0.2153	NEUTRAL	NA	46	"ADCY6,AMIGO2,ANO6,ANP32D,ARF3,ARID2,ASB8,C12orf54,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DDN,DDX23,DHH,ENDOU,FKBP11,H1FNT,HDAC7,KANSL2,KMT2D,LALBA,LMBR1L,OR10AD1,OR8S1,PCED1B,PFKM,PRKAG1,RAPGEF3,RHEBL1,RND1,RPAP3,SCAF11,SENP1,SLC38A1,SLC38A2,SLC38A4,SLC48A1,TMEM106C,TUBA1A,TUBA1B,VDR,WNT1,WNT10B,ZNF641"
TCGA.AA.A00D.01A	12	45740751	46298665	34	-0.1126	NEUTRAL	NA	2	"ANO6,ARID2"
TCGA.AG.A00C.01A	12	45740751	46598034	56	-0.2273	NEUTRAL	NA	4	"ANO6,ARID2,SCAF11,SLC38A1"
TCGA.AG.A00Y.01A	12	45744390	46758832	66	-0.2429	NEUTRAL	NA	5	"ANO6,ARID2,SCAF11,SLC38A1,SLC38A2"
TCGA.AA.3660	12	45931515	68648621	6352	0.3543	NEUTRAL	NA	311	Too-Many
TCGA.AA.A010.01A	12	46169773	47163016	62	0.067	NEUTRAL	NA	5	"ARID2,SCAF11,SLC38A1,SLC38A2,SLC38A4"
TCGA.AF.3914.01A	12	46205164	47186699	66	-0.0139	NEUTRAL	NA	5	"ARID2,SCAF11,SLC38A1,SLC38A2,SLC38A4"
TCGA.AG.A032.01A	12	46254543	48143136	91	-0.0714	NEUTRAL	NA	10	"AMIGO2,ARID2,ENDOU,PCED1B,RAPGEF3,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4"
TCGA.AA.A00N.01A	12	46338988	46367890	8	0.2625	NEUTRAL	NA	1	SCAF11
TCGA.F5.6464	12	46514888	133777644	27318	-0.0201	NEUTRAL	NA	697	Too-Many
TCGA.DC.4745	12	46515808	133777644	27316	-0.086	NEUTRAL	NA	697	Too-Many
TCGA.AA.3844	12	46556417	47342875	180	0.2881	NEUTRAL	NA	3	"SLC38A1,SLC38A2,SLC38A4"
TCGA.AA.A03J	12	46579449	133777644	26709	0.1149	NEUTRAL	NA	697	Too-Many
TCGA.AG.A014.01A	12	46591466	48272714	103	-0.4519	NEUTRAL	NA	11	"AMIGO2,ENDOU,HDAC7,PCED1B,RAPGEF3,RPAP3,SLC38A1,SLC38A2,SLC38A4,SLC48A1,VDR"
TCGA.AG.A00C.01A	12	46599823	48370834	117	0.1021	NEUTRAL	NA	13	"AMIGO2,COL2A1,ENDOU,HDAC7,PCED1B,RAPGEF3,RPAP3,SLC38A1,SLC38A2,SLC38A4,SLC48A1,TMEM106C,VDR"
TCGA.AG.A01W.01A	12	46661784	46666336	11	-0.4886	NEUTRAL	NA	1	SLC38A1
TCGA.AG.A01W.01A	12	46676551	47507629	115	0.0175	NEUTRAL	NA	4	"AMIGO2,PCED1B,SLC38A2,SLC38A4"
TCGA.AA.A01Q.01A	12	46754842	47472190	24	-0.2992	NEUTRAL	NA	3	"AMIGO2,SLC38A2,SLC38A4"
TCGA.AA.A00F.01A	12	46754842	49227023	230	0.1048	NEUTRAL	NA	28	"ADCY6,AMIGO2,ANP32D,ASB8,C12orf54,CACNB3,CCDC184,CCNT1,COL2A1,DDX23,ENDOU,H1FNT,HDAC7,KANSL2,LALBA,OR10AD1,OR8S1,PCED1B,PFKM,RAPGEF3,RPAP3,SENP1,SLC38A2,SLC38A4,SLC48A1,TMEM106C,VDR,ZNF641"
TCGA.AG.A02G.01A	12	46760588	49228076	221	0.2693	NEUTRAL	NA	28	"ADCY6,AMIGO2,ANP32D,ASB8,C12orf54,CACNB3,CCDC184,CCNT1,COL2A1,DDX23,ENDOU,H1FNT,HDAC7,KANSL2,LALBA,OR10AD1,OR8S1,PCED1B,PFKM,RAPGEF3,RPAP3,SENP1,SLC38A2,SLC38A4,SLC48A1,TMEM106C,VDR,ZNF641"
TCGA.DM.A28M.01A	12	46760857	60173206	2318	0.1577	NEUTRAL	NA	278	Too-Many
TCGA.AG.A00Y.01A	12	46764257	48383470	116	0.1725	NEUTRAL	NA	12	"AMIGO2,COL2A1,ENDOU,HDAC7,PCED1B,RAPGEF3,RPAP3,SLC38A2,SLC38A4,SLC48A1,TMEM106C,VDR"
TCGA.AA.A00D.01A	12	46764910	51857346	628	0.0669	NEUTRAL	NA	85	"ADCY6,AMIGO2,ANP32D,AQP2,AQP5,AQP6,ARF3,ASB8,ASIC1,ATF1,BCDIN3D,BIN2,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CELA1,CERS5,COL2A1,COX14,CSRNP2,DAZAP2,DDN,DDX23,DHH,DIP2B,DNAJC22,ENDOU,FAIM2,FAM186A,FAM186B,FKBP11,FMNL3,GALNT6,GPD1,H1FNT,HDAC7,HIGD1C,KANSL2,KCNH3,KMT2D,LALBA,LARP4,LETMD1,LIMA1,LMBR1L,MCRS1,METTL7A,NCKAP5L,OR10AD1,OR8S1,PCED1B,PFKM,POU6F1,PRKAG1,PRPF40B,PRPH,RACGAP1,RAPGEF3,RHEBL1,RND1,RPAP3,SENP1,SLC11A2,SLC38A2,SLC38A4,SLC48A1,SLC4A8,SMAGP,SMARCD1,SPATS2,TFCP2,TMBIM6,TMEM106C,TMPRSS12,TROAP,TUBA1A,TUBA1B,TUBA1C,VDR,WNT1,WNT10B,ZNF641"
TCGA.AA.3941	12	46958227	47426060	124	-0.2351	NEUTRAL	NA	1	SLC38A4
TCGA.AA.3982	12	46984369	47469222	137	-0.2164	NEUTRAL	NA	1	SLC38A4
TCGA.AG.3909.01A	12	47160436	48075452	22	0.2665	NEUTRAL	NA	4	"AMIGO2,PCED1B,RPAP3,SLC38A4"
TCGA.AA.A00N.01A	12	47160436	48084263	25	0.0535	NEUTRAL	NA	4	"AMIGO2,PCED1B,RPAP3,SLC38A4"
TCGA.CK.5914.01A	12	47160436	48084263	26	0.3299	NEUTRAL	NA	4	"AMIGO2,PCED1B,RPAP3,SLC38A4"
TCGA.AA.3850	12	47290148	55261052	2152	0.31475	NEUTRAL	NA	168	Too-Many
TCGA.DC.6155	12	47367110	54496165	1938	0.2717	NEUTRAL	NA	153	Too-Many
TCGA.AA.3811	12	47428977	55409681	2172	0.2372	NEUTRAL	NA	169	Too-Many
TCGA.AA.3982	12	47476226	52489860	1152	0.2479	NEUTRAL	NA	90	"ACVR1B,ACVRL1,ADCY6,ANKRD33,ANP32D,AQP2,AQP5,AQP6,ARF3,ASB8,ASIC1,ATF1,ATG101,BCDIN3D,BIN2,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CELA1,CERS5,COL2A1,COX14,CSRNP2,DAZAP2,DDN,DDX23,DHH,DIP2B,DNAJC22,ENDOU,FAIM2,FAM186A,FAM186B,FIGNL2,FKBP11,FMNL3,GALNT6,GPD1,GRASP,H1FNT,HDAC7,HIGD1C,KANSL2,KCNH3,KMT2D,LALBA,LARP4,LETMD1,LIMA1,LMBR1L,MCRS1,METTL7A,NCKAP5L,NR4A1,OR10AD1,OR8S1,PCED1B,PFKM,POU6F1,PRKAG1,PRPF40B,PRPH,RACGAP1,RAPGEF3,RHEBL1,RND1,RPAP3,SCN8A,SENP1,SLC11A2,SLC48A1,SLC4A8,SMAGP,SMARCD1,SPATS2,TFCP2,TMBIM6,TMEM106C,TMPRSS12,TROAP,TUBA1A,TUBA1B,TUBA1C,VDR,WNT1,WNT10B,ZNF641"
TCGA.AG.A01W.01A	12	47510489	47620962	34	-0.3076	NEUTRAL	NA	1	PCED1B
TCGA.AA.A01Q.01A	12	47628797	48091329	14	0.1971	NEUTRAL	NA	2	"PCED1B,RPAP3"
TCGA.AA.A010.01A	12	47628797	48151660	46	0.0212	NEUTRAL	NA	4	"ENDOU,PCED1B,RAPGEF3,RPAP3"
TCGA.AF.3914.01A	12	47628797	49162669	202	0.0948	NEUTRAL	NA	23	"ADCY6,ANP32D,ASB8,C12orf54,CCDC184,CCNT1,COL2A1,ENDOU,H1FNT,HDAC7,KANSL2,LALBA,OR10AD1,OR8S1,PCED1B,PFKM,RAPGEF3,RPAP3,SENP1,SLC48A1,TMEM106C,VDR,ZNF641"
TCGA.AG.4021	12	47631228	133777644	26952	0.0127	NEUTRAL	NA	692	Too-Many
TCGA.AU.6004	12	47631228	133777644	26824	-0.0079	NEUTRAL	NA	692	Too-Many
TCGA.AG.A01W.01A	12	47646134	47679073	9	0.1858	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	47682902	47708838	14	-0.4309	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	47710282	47719246	9	-0.0347	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	47720557	47725933	8	-0.46	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	47729681	47735254	9	0.043	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	47745100	47774214	9	-0.1951	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	47807957	50486284	440	-0.0927	NEUTRAL	NA	59	"ADCY6,ANP32D,AQP2,AQP5,AQP6,ARF3,ASB8,ASIC1,BCDIN3D,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DDN,DDX23,DHH,DNAJC22,ENDOU,FAIM2,FAM186B,FKBP11,FMNL3,H1FNT,HDAC7,KANSL2,KCNH3,KMT2D,LALBA,LMBR1L,MCRS1,NCKAP5L,OR10AD1,OR8S1,PFKM,PRKAG1,PRPF40B,PRPH,RACGAP1,RAPGEF3,RHEBL1,RND1,RPAP3,SENP1,SLC48A1,SMARCD1,SPATS2,TMBIM6,TMEM106C,TROAP,TUBA1A,TUBA1B,TUBA1C,VDR,WNT1,WNT10B,ZNF641"
TCGA.AG.3591	12	48004736	72360263	7104	0.1487	NEUTRAL	NA	331	Too-Many
TCGA.AA.A00Q.01A	12	48080516	48151660	38	-0.3524	NEUTRAL	NA	3	"ENDOU,RAPGEF3,RPAP3"
TCGA.AG.3909.01A	12	48080516	48195962	57	-0.4369	NEUTRAL	NA	5	"ENDOU,HDAC7,RAPGEF3,RPAP3,SLC48A1"
TCGA.AA.A02H.01A	12	48081622	57180862	1707	-0.2093	NEUTRAL	NA	231	Too-Many
TCGA.AA.3509.01A	12	48082847	50746456	578	-0.0532	NEUTRAL	NA	64	"ADCY6,ANP32D,AQP2,AQP5,AQP6,ARF3,ASB8,ASIC1,BCDIN3D,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CERS5,COL2A1,COX14,DDN,DDX23,DHH,DNAJC22,ENDOU,FAIM2,FAM186A,FAM186B,FKBP11,FMNL3,GPD1,H1FNT,HDAC7,KANSL2,KCNH3,KMT2D,LALBA,LIMA1,LMBR1L,MCRS1,NCKAP5L,OR10AD1,OR8S1,PFKM,PRKAG1,PRPF40B,PRPH,RACGAP1,RAPGEF3,RHEBL1,RND1,RPAP3,SENP1,SLC48A1,SMARCD1,SPATS2,TMBIM6,TMEM106C,TROAP,TUBA1A,TUBA1B,TUBA1C,VDR,WNT1,WNT10B,ZNF641"
TCGA.AZ.4684.01A	12	48082847	50794701	582	0.0027	NEUTRAL	NA	65	"ADCY6,ANP32D,AQP2,AQP5,AQP6,ARF3,ASB8,ASIC1,BCDIN3D,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,CERS5,COL2A1,COX14,DDN,DDX23,DHH,DNAJC22,ENDOU,FAIM2,FAM186A,FAM186B,FKBP11,FMNL3,GPD1,H1FNT,HDAC7,KANSL2,KCNH3,KMT2D,LALBA,LARP4,LIMA1,LMBR1L,MCRS1,NCKAP5L,OR10AD1,OR8S1,PFKM,PRKAG1,PRPF40B,PRPH,RACGAP1,RAPGEF3,RHEBL1,RND1,RPAP3,SENP1,SLC48A1,SMARCD1,SPATS2,TMBIM6,TMEM106C,TROAP,TUBA1A,TUBA1B,TUBA1C,VDR,WNT1,WNT10B,ZNF641"
TCGA.AG.A025.01A	12	48082847	57926290	1987	-0.2912	NEUTRAL	NA	254	Too-Many
TCGA.AG.A01N.01A	12	48082847	58193577	2098	-0.3373	NEUTRAL	NA	270	Too-Many
TCGA.AG.A023.01A	12	48084263	49221371	184	-0.1412	NEUTRAL	NA	23	"ADCY6,ANP32D,ASB8,C12orf54,CACNB3,CCDC184,CCNT1,COL2A1,ENDOU,H1FNT,HDAC7,KANSL2,LALBA,OR10AD1,OR8S1,PFKM,RAPGEF3,RPAP3,SENP1,SLC48A1,TMEM106C,VDR,ZNF641"
TCGA.CK.5914.01A	12	48090012	48272714	67	-0.3516	NEUTRAL	NA	6	"ENDOU,HDAC7,RAPGEF3,RPAP3,SLC48A1,VDR"
TCGA.AG.4009.01A	12	48095245	48145514	29	0.2201	NEUTRAL	NA	3	"ENDOU,RAPGEF3,RPAP3"
TCGA.AA.A01Q.01A	12	48095245	48172764	33	-0.3448	NEUTRAL	NA	4	"ENDOU,RAPGEF3,RPAP3,SLC48A1"
TCGA.AG.A00H.01A	12	48104548	48141287	16	0.0699	NEUTRAL	NA	2	"ENDOU,RAPGEF3"
TCGA.AA.A00N.01A	12	48110032	48272714	59	-0.0421	NEUTRAL	NA	5	"ENDOU,HDAC7,RAPGEF3,SLC48A1,VDR"
TCGA.AA.A00L.01A	12	48119073	48151660	22	0.1689	NEUTRAL	NA	2	"ENDOU,RAPGEF3"
TCGA.A6.5661	12	48119831	55054193	1804	-0.3487	NEUTRAL	NA	163	Too-Many
TCGA.AA.A02E.01A	12	48141287	57572095	1781	-0.404	NEUTRAL	NA	239	Too-Many
TCGA.AG.4009.01A	12	48152235	48191872	19	-0.3841	NEUTRAL	NA	3	"HDAC7,RAPGEF3,SLC48A1"
TCGA.AA.A00L.01A	12	48173896	48179504	6	-0.3351	NEUTRAL	NA	2	"HDAC7,SLC48A1"
TCGA.AA.A00Q.01A	12	48173896	49412423	211	-0.0106	NEUTRAL	NA	29	"ADCY6,ANP32D,ARF3,ASB8,C12orf54,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DDN,DDX23,FKBP11,H1FNT,HDAC7,KANSL2,LALBA,OR10AD1,OR8S1,PFKM,PRKAG1,RND1,SENP1,SLC48A1,TMEM106C,VDR,WNT1,WNT10B,ZNF641"
TCGA.AG.3891.01A	12	48179504	48370583	35	0.1456	NEUTRAL	NA	4	"COL2A1,HDAC7,TMEM106C,VDR"
TCGA.AA.A00L.01A	12	48180321	48547099	94	0.2072	NEUTRAL	NA	7	"ASB8,COL2A1,HDAC7,PFKM,SENP1,TMEM106C,VDR"
TCGA.AG.A032.01A	12	48180321	49312028	176	-0.1328	NEUTRAL	NA	22	"ADCY6,ANP32D,ASB8,C12orf54,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DDX23,H1FNT,HDAC7,KANSL2,LALBA,OR10AD1,OR8S1,PFKM,RND1,SENP1,TMEM106C,VDR,ZNF641"
TCGA.AA.A00K.01A	12	48181454	48380068	57	0.0055	NEUTRAL	NA	4	"COL2A1,HDAC7,TMEM106C,VDR"
TCGA.AG.A00H.01A	12	48182991	49578753	264	-0.1712	NEUTRAL	NA	34	"ADCY6,ANP32D,ARF3,ASB8,C12orf54,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DDN,DDX23,DHH,FKBP11,H1FNT,HDAC7,KANSL2,KMT2D,LALBA,LMBR1L,OR10AD1,OR8S1,PFKM,PRKAG1,RHEBL1,RND1,SENP1,TMEM106C,TUBA1A,TUBA1B,VDR,WNT1,WNT10B,ZNF641"
TCGA.AA.A01Q.01A	12	48188925	48357978	16	-0.3413	NEUTRAL	NA	3	"HDAC7,TMEM106C,VDR"
TCGA.AA.A024.01A	12	48191872	49496626	265	0.1375	NEUTRAL	NA	32	"ADCY6,ANP32D,ARF3,ASB8,C12orf54,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DDN,DDX23,DHH,FKBP11,H1FNT,HDAC7,KANSL2,KMT2D,LALBA,LMBR1L,OR10AD1,OR8S1,PFKM,PRKAG1,RHEBL1,RND1,SENP1,TMEM106C,VDR,WNT1,WNT10B,ZNF641"
TCGA.AG.4009.01A	12	48192332	48596135	92	0.2044	NEUTRAL	NA	9	"ASB8,CCDC184,COL2A1,HDAC7,OR10AD1,PFKM,SENP1,TMEM106C,VDR"
TCGA.A6.6653	12	48201316	130298707	25719	0	NEUTRAL	NA	658	Too-Many
TCGA.AA.A010.01A	12	48238488	48249366	4	-0.4989	NEUTRAL	NA	1	VDR
TCGA.AG.3909.01A	12	48238488	48539295	86	0.2146	NEUTRAL	NA	5	"COL2A1,PFKM,SENP1,TMEM106C,VDR"
TCGA.AA.A010.01A	12	48250871	48370222	16	0.2361	NEUTRAL	NA	3	"COL2A1,TMEM106C,VDR"
TCGA.AG.3906.01A	12	48250871	48393670	47	-0.1138	NEUTRAL	NA	3	"COL2A1,TMEM106C,VDR"
TCGA.AG.A014.01A	12	48357978	49950925	301	0.1463	NEUTRAL	NA	39	"ADCY6,ANP32D,ARF3,ASB8,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DDN,DDX23,DHH,DNAJC22,FKBP11,H1FNT,KANSL2,KCNH3,KMT2D,LALBA,LMBR1L,OR10AD1,OR8S1,PFKM,PRKAG1,PRPH,RHEBL1,RND1,SENP1,SPATS2,TMEM106C,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B,ZNF641"
TCGA.CK.5914.01A	12	48367830	48388133	36	-0.1756	NEUTRAL	NA	1	COL2A1
TCGA.AA.A01Q.01A	12	48369048	48397986	39	-0.3108	NEUTRAL	NA	1	COL2A1
TCGA.AG.3891.01A	12	48370834	48378757	17	-0.2602	NEUTRAL	NA	1	COL2A1
TCGA.AG.A00C.01A	12	48371055	48380548	15	-0.3514	NEUTRAL	NA	1	COL2A1
TCGA.AG.3891.01A	12	48379252	49072770	84	0.0532	NEUTRAL	NA	13	"ANP32D,ASB8,C12orf54,CCDC184,COL2A1,H1FNT,KANSL2,LALBA,OR10AD1,OR8S1,PFKM,SENP1,ZNF641"
TCGA.AG.A00C.01A	12	48381357	49948072	279	0.1924	NEUTRAL	NA	38	"ADCY6,ANP32D,ARF3,ASB8,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,COL2A1,DDN,DDX23,DHH,DNAJC22,FKBP11,H1FNT,KANSL2,KCNH3,KMT2D,LALBA,LMBR1L,OR10AD1,OR8S1,PFKM,PRKAG1,PRPH,RHEBL1,RND1,SENP1,SPATS2,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B,ZNF641"
TCGA.AA.A010.01A	12	48386590	48468090	21	-0.0856	NEUTRAL	NA	2	"COL2A1,SENP1"
TCGA.AG.A016.01A	12	48387176	48737436	51	-0.2005	NEUTRAL	NA	8	"ASB8,CCDC184,COL2A1,H1FNT,OR10AD1,PFKM,SENP1,ZNF641"
TCGA.AA.A00N.01A	12	48397986	48477327	13	0.2433	NEUTRAL	NA	2	"COL2A1,SENP1"
TCGA.AG.3906.01A	12	48439048	48491745	15	0.2537	NEUTRAL	NA	1	SENP1
TCGA.AG.A00Y.01A	12	48439048	58143163	1989	0.3102	NEUTRAL	NA	256	Too-Many
TCGA.CK.5914.01A	12	48468090	48516532	7	-0.2697	NEUTRAL	NA	2	"PFKM,SENP1"
TCGA.AG.3906.01A	12	48495167	48596135	25	-0.0647	NEUTRAL	NA	5	"ASB8,CCDC184,OR10AD1,PFKM,SENP1"
TCGA.AA.A01Q.01A	12	48516532	49162669	56	0.1374	NEUTRAL	NA	13	"ADCY6,ANP32D,ASB8,C12orf54,CCDC184,CCNT1,H1FNT,KANSL2,LALBA,OR10AD1,OR8S1,PFKM,ZNF641"
TCGA.A6.3808.01A	12	48535500	49960127	263	-0.2467	NEUTRAL	NA	37	"ADCY6,ANP32D,ARF3,ASB8,C12orf54,C1QL4,CACNB3,CCDC184,CCDC65,CCNT1,DDN,DDX23,DHH,DNAJC22,FKBP11,H1FNT,KANSL2,KCNH3,KMT2D,LALBA,LMBR1L,MCRS1,OR10AD1,OR8S1,PFKM,PRKAG1,PRPH,RHEBL1,RND1,SPATS2,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B,ZNF641"
TCGA.AA.A00N.01A	12	48537466	48543107	5	-0.2555	NEUTRAL	NA	2	"ASB8,PFKM"
TCGA.AA.A01K.01A	12	48537466	49226187	76	-0.2559	NEUTRAL	NA	15	"ADCY6,ANP32D,ASB8,C12orf54,CACNB3,CCDC184,CCNT1,DDX23,H1FNT,KANSL2,LALBA,OR10AD1,OR8S1,PFKM,ZNF641"
TCGA.CK.5914.01A	12	48537466	49308170	97	-0.4465	NEUTRAL	NA	17	"ADCY6,ANP32D,ASB8,C12orf54,CACNB3,CCDC184,CCDC65,CCNT1,DDX23,H1FNT,KANSL2,LALBA,OR10AD1,OR8S1,PFKM,RND1,ZNF641"
TCGA.AA.3524	12	48541756	133777644	26635	-0.0025	NEUTRAL	NA	682	Too-Many
TCGA.AG.3909.01A	12	48543107	49110259	45	-0.4185	NEUTRAL	NA	11	"ANP32D,ASB8,C12orf54,CCDC184,CCNT1,H1FNT,KANSL2,LALBA,OR10AD1,OR8S1,ZNF641"
TCGA.AA.A029.01A	12	48544933	58008062	1851	0.0488	NEUTRAL	NA	248	Too-Many
TCGA.AA.A00L.01A	12	48577864	48921648	20	-0.323	NEUTRAL	NA	7	"ANP32D,C12orf54,CCDC184,H1FNT,OR10AD1,OR8S1,ZNF641"
TCGA.AG.A02X.01A	12	48577864	57870604	1808	0.0185	NEUTRAL	NA	239	Too-Many
TCGA.AA.A010.01A	12	48736807	48866421	8	-0.3097	NEUTRAL	NA	1	ZNF641
TCGA.AG.A016.01A	12	48738331	48962256	17	0.1134	NEUTRAL	NA	5	"ANP32D,C12orf54,LALBA,OR8S1,ZNF641"
TCGA.AG.3906.01A	12	48740979	49086812	28	-0.0401	NEUTRAL	NA	7	"ANP32D,C12orf54,CCNT1,KANSL2,LALBA,OR8S1,ZNF641"
TCGA.AG.4009.01A	12	48919413	49212638	40	-0.1329	NEUTRAL	NA	6	"ADCY6,CACNB3,CCNT1,KANSL2,LALBA,OR8S1"
TCGA.AA.A00N.01A	12	48961679	49217079	39	-0.2656	NEUTRAL	NA	5	"ADCY6,CACNB3,CCNT1,KANSL2,LALBA"
TCGA.AA.A00L.01A	12	48961679	49221371	37	0.1062	NEUTRAL	NA	5	"ADCY6,CACNB3,CCNT1,KANSL2,LALBA"
TCGA.AG.A016.01A	12	48962828	49165526	24	-0.3528	NEUTRAL	NA	4	"ADCY6,CCNT1,KANSL2,LALBA"
TCGA.AG.A01J.01A	12	49048170	58347334	1942	-0.243	NEUTRAL	NA	253	Too-Many
TCGA.AG.3906.01A	12	49089481	49110259	7	0.2781	NEUTRAL	NA	1	CCNT1
TCGA.AA.A01Q.01A	12	49164528	49212638	14	-0.3743	NEUTRAL	NA	2	"ADCY6,CACNB3"
TCGA.AG.A016.01A	12	49166080	49392815	66	0.0111	NEUTRAL	NA	10	"ADCY6,ARF3,CACNB3,CCDC65,DDN,DDX23,FKBP11,RND1,WNT1,WNT10B"
TCGA.AG.3906.01A	12	49217079	49220775	8	0.206	NEUTRAL	NA	1	CACNB3
TCGA.AA.A00L.01A	12	49224200	49251740	16	-0.3403	NEUTRAL	NA	2	"DDX23,RND1"
TCGA.AA.A02R.01A	12	49227023	53679676	835	0.3342	NEUTRAL	NA	105	Too-Many
TCGA.AG.A02G.01A	12	49231677	49448992	78	0.1093	NEUTRAL	NA	10	"ARF3,CCDC65,DDN,DDX23,FKBP11,KMT2D,PRKAG1,RND1,WNT1,WNT10B"
TCGA.AG.A008.01A	12	49239309	56397380	1268	0.1319	NEUTRAL	NA	176	Too-Many
TCGA.AF.3914.01A	12	49239309	57873465	1780	-0.0965	NEUTRAL	NA	227	Too-Many
TCGA.AG.4009.01A	12	49251740	49363825	25	0.1355	NEUTRAL	NA	5	"ARF3,CCDC65,FKBP11,RND1,WNT10B"
TCGA.AA.A01Q.01A	12	49251740	50283821	218	-0.176	NEUTRAL	NA	29	"ARF3,BCDIN3D,C1QL4,CCDC65,DDN,DHH,DNAJC22,FAIM2,FAM186B,FKBP11,FMNL3,KCNH3,KMT2D,LMBR1L,MCRS1,NCKAP5L,PRKAG1,PRPF40B,PRPH,RHEBL1,RND1,SPATS2,TMBIM6,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B"
TCGA.AA.A00F.01A	12	49251740	53215626	629	0.0706	NEUTRAL	NA	90	"ACVR1B,ACVRL1,ANKRD33,AQP2,AQP5,AQP6,ARF3,ASIC1,ATF1,ATG101,BCDIN3D,BIN2,C12orf80,C1QL4,CCDC65,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DDN,DHH,DIP2B,DNAJC22,FAIM2,FAM186A,FAM186B,FIGNL2,FKBP11,FMNL3,GALNT6,GPD1,GRASP,HIGD1C,KCNH3,KMT2D,KRT1,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT79,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LARP4,LETMD1,LIMA1,LMBR1L,MCRS1,METTL7A,NCKAP5L,NR4A1,POU6F1,PRKAG1,PRPF40B,PRPH,RACGAP1,RHEBL1,RND1,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,SPATS2,TFCP2,TMBIM6,TMPRSS12,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B"
TCGA.AA.A010.01A	12	49254743	49310702	8	0.1674	NEUTRAL	NA	2	"CCDC65,RND1"
TCGA.AG.3906.01A	12	49254743	49392815	31	0.2444	NEUTRAL	NA	7	"ARF3,CCDC65,DDN,FKBP11,RND1,WNT1,WNT10B"
TCGA.AA.A00L.01A	12	49254743	50297469	198	0.0988	NEUTRAL	NA	29	"ARF3,BCDIN3D,C1QL4,CCDC65,DDN,DHH,DNAJC22,FAIM2,FAM186B,FKBP11,FMNL3,KCNH3,KMT2D,LMBR1L,MCRS1,NCKAP5L,PRKAG1,PRPF40B,PRPH,RHEBL1,RND1,SPATS2,TMBIM6,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B"
TCGA.AG.A023.01A	12	49315781	49448992	59	-0.1981	NEUTRAL	NA	7	"ARF3,DDN,FKBP11,KMT2D,PRKAG1,WNT1,WNT10B"
TCGA.CK.5914.01A	12	49317933	49390496	16	-0.2476	NEUTRAL	NA	5	"ARF3,DDN,FKBP11,WNT1,WNT10B"
TCGA.AG.3891.01A	12	49317933	50146704	204	0.1791	NEUTRAL	NA	24	"ARF3,C1QL4,DDN,DHH,DNAJC22,FAM186B,FKBP11,FMNL3,KCNH3,KMT2D,LMBR1L,MCRS1,PRKAG1,PRPF40B,PRPH,RHEBL1,SPATS2,TMBIM6,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B"
TCGA.AA.A010.01A	12	49332681	49392815	15	0.0494	NEUTRAL	NA	4	"ARF3,DDN,WNT1,WNT10B"
TCGA.AG.A032.01A	12	49333743	75905245	2499	-0.0926	NEUTRAL	NA	312	Too-Many
TCGA.AG.4009.01A	12	49373244	49398253	10	-0.4334	NEUTRAL	NA	3	"DDN,PRKAG1,WNT1"
TCGA.AG.A016.01A	12	49396654	49580046	72	-0.4034	NEUTRAL	NA	7	"DHH,KMT2D,LMBR1L,PRKAG1,RHEBL1,TUBA1A,TUBA1B"
TCGA.AG.4009.01A	12	49398697	49438526	27	0.0302	NEUTRAL	NA	2	"KMT2D,PRKAG1"
TCGA.AG.3906.01A	12	49412423	49433008	18	0.0187	NEUTRAL	NA	2	"KMT2D,PRKAG1"
TCGA.AA.A010.01A	12	49412423	49433577	20	-0.311	NEUTRAL	NA	2	"KMT2D,PRKAG1"
TCGA.AA.A00N.01A	12	49418584	49440382	23	-0.203	NEUTRAL	NA	1	KMT2D
TCGA.CK.5914.01A	12	49419948	49433577	14	-0.269	NEUTRAL	NA	1	KMT2D
TCGA.AA.A00Q.01A	12	49448043	51888681	369	0.0741	NEUTRAL	NA	49	"AQP2,AQP5,AQP6,ASIC1,ATF1,BCDIN3D,BIN2,C1QL4,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DHH,DIP2B,DNAJC22,FAIM2,FAM186A,FAM186B,FMNL3,GALNT6,GPD1,HIGD1C,KCNH3,KMT2D,LARP4,LETMD1,LIMA1,LMBR1L,MCRS1,METTL7A,NCKAP5L,POU6F1,PRPF40B,PRPH,RACGAP1,RHEBL1,SLC11A2,SLC4A8,SMAGP,SMARCD1,SPATS2,TFCP2,TMBIM6,TMPRSS12,TROAP,TUBA1A,TUBA1B,TUBA1C"
TCGA.AG.A02G.01A	12	49460697	53878019	860	0.2027	NEUTRAL	NA	104	Too-Many
TCGA.AG.A023.01A	12	49462763	51495676	324	-0.1173	NEUTRAL	NA	41	"AQP2,AQP5,AQP6,ASIC1,ATF1,BCDIN3D,C1QL4,CERS5,COX14,CSRNP2,DHH,DIP2B,DNAJC22,FAIM2,FAM186A,FAM186B,FMNL3,GPD1,HIGD1C,KCNH3,LARP4,LETMD1,LIMA1,LMBR1L,MCRS1,METTL7A,NCKAP5L,PRPF40B,PRPH,RACGAP1,RHEBL1,SLC11A2,SMARCD1,SPATS2,TFCP2,TMBIM6,TMPRSS12,TROAP,TUBA1A,TUBA1B,TUBA1C"
TCGA.AG.3906.01A	12	49462763	52309779	447	0.0972	NEUTRAL	NA	52	"ACVRL1,ANKRD33,AQP2,AQP5,AQP6,ASIC1,ATF1,BCDIN3D,BIN2,C1QL4,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DHH,DIP2B,DNAJC22,FAIM2,FAM186A,FAM186B,FIGNL2,FMNL3,GALNT6,GPD1,HIGD1C,KCNH3,LARP4,LETMD1,LIMA1,LMBR1L,MCRS1,METTL7A,NCKAP5L,POU6F1,PRPF40B,PRPH,RACGAP1,RHEBL1,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,SPATS2,TFCP2,TMBIM6,TMPRSS12,TROAP,TUBA1A,TUBA1B,TUBA1C"
TCGA.AA.A010.01A	12	49483632	49504206	16	-0.2458	NEUTRAL	NA	2	"DHH,LMBR1L"
TCGA.AG.4009.01A	12	49483632	49504206	15	0.1316	NEUTRAL	NA	2	"DHH,LMBR1L"
TCGA.AA.A024.01A	12	49500720	52824296	525	0.0117	NEUTRAL	NA	64	"ACVR1B,ACVRL1,ANKRD33,AQP2,AQP5,AQP6,ASIC1,ATF1,ATG101,BCDIN3D,BIN2,C12orf80,C1QL4,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DIP2B,DNAJC22,FAIM2,FAM186A,FAM186B,FIGNL2,FMNL3,GALNT6,GPD1,GRASP,HIGD1C,KCNH3,KRT7,KRT75,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LARP4,LETMD1,LIMA1,LMBR1L,MCRS1,METTL7A,NCKAP5L,NR4A1,POU6F1,PRPF40B,PRPH,RACGAP1,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,SPATS2,TFCP2,TMBIM6,TMPRSS12,TROAP,TUBA1A,TUBA1B,TUBA1C"
TCGA.AG.4009.01A	12	49521699	49943202	52	-0.4101	NEUTRAL	NA	9	"C1QL4,DNAJC22,KCNH3,PRPH,SPATS2,TROAP,TUBA1A,TUBA1B,TUBA1C"
TCGA.AG.A016.01A	12	49582660	49948072	42	-0.0592	NEUTRAL	NA	8	"C1QL4,DNAJC22,KCNH3,PRPH,SPATS2,TROAP,TUBA1A,TUBA1C"
TCGA.AG.A00H.01A	12	49582660	56638077	1253	-0.1382	NEUTRAL	NA	176	Too-Many
TCGA.CM.6677	12	49598802	55920313	1683	-0.2961	NEUTRAL	NA	142	Too-Many
TCGA.AA.A010.01A	12	49658878	49854707	28	-0.1822	NEUTRAL	NA	6	"C1QL4,DNAJC22,PRPH,SPATS2,TROAP,TUBA1C"
TCGA.AA.3930.01A	12	49666009	50026291	73	0.0703	NEUTRAL	NA	10	"C1QL4,DNAJC22,FAM186B,KCNH3,MCRS1,PRPF40B,PRPH,SPATS2,TROAP,TUBA1C"
TCGA.AA.A01K.01A	12	49725291	53877393	794	-0.0841	NEUTRAL	NA	97	"AAAS,ACVR1B,ACVRL1,AMHR2,ANKRD33,AQP2,AQP5,AQP6,ASIC1,ATF1,ATG101,BCDIN3D,BIN2,C12orf10,C12orf80,C1QL4,CELA1,CERS5,COX14,CSAD,CSRNP2,DAZAP2,DIP2B,DNAJC22,EIF4B,ESPL1,FAIM2,FAM186A,FAM186B,FIGNL2,FMNL3,GALNT6,GPD1,GRASP,HIGD1C,IGFBP6,ITGB7,KCNH3,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LARP4,LETMD1,LIMA1,MAP3K12,MCRS1,METTL7A,MFSD5,NCKAP5L,NR4A1,PCBP2,PFDN5,POU6F1,PRPF40B,PRR13,RACGAP1,RARG,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,SOAT2,SP1,SP7,SPATS2,SPRYD3,TFCP2,TMBIM6,TMPRSS12,TNS2,TROAP,ZNF740"
TCGA.AA.A00N.01A	12	49854707	49893841	7	0.1304	NEUTRAL	NA	1	SPATS2
TCGA.AG.3909.01A	12	49854707	49959813	34	0.047	NEUTRAL	NA	3	"KCNH3,MCRS1,SPATS2"
TCGA.CK.5914.01A	12	49890588	50366920	124	-0.0638	NEUTRAL	NA	13	"AQP2,AQP5,AQP6,BCDIN3D,FAIM2,FAM186B,FMNL3,KCNH3,MCRS1,NCKAP5L,PRPF40B,SPATS2,TMBIM6"
TCGA.AA.A00N.01A	12	49936472	49956755	16	-0.1764	NEUTRAL	NA	2	"KCNH3,MCRS1"
TCGA.AG.4009.01A	12	49943823	50410379	120	-0.0529	NEUTRAL	NA	13	"AQP2,AQP5,AQP6,BCDIN3D,FAIM2,FAM186B,FMNL3,KCNH3,MCRS1,NCKAP5L,PRPF40B,RACGAP1,TMBIM6"
TCGA.AG.A00C.01A	12	49949355	49996921	20	-0.0994	NEUTRAL	NA	3	"FAM186B,KCNH3,MCRS1"
TCGA.AG.A014.01A	12	49951425	58157822	1699	-0.2727	NEUTRAL	NA	222	Too-Many
TCGA.AG.A016.01A	12	49952368	52387722	380	-0.0746	NEUTRAL	NA	41	"ACVR1B,ACVRL1,ANKRD33,AQP2,AQP5,AQP6,ASIC1,ATF1,BCDIN3D,BIN2,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DIP2B,FAIM2,FAM186A,FAM186B,FIGNL2,FMNL3,GALNT6,GPD1,HIGD1C,LARP4,LETMD1,LIMA1,MCRS1,METTL7A,NCKAP5L,POU6F1,PRPF40B,RACGAP1,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,TFCP2,TMBIM6,TMPRSS12"
TCGA.AA.A00N.01A	12	49957174	50197673	74	0.3157	NEUTRAL	NA	6	"FAM186B,FMNL3,MCRS1,NCKAP5L,PRPF40B,TMBIM6"
TCGA.AA.A010.01A	12	49959813	49993203	7	0.2799	NEUTRAL	NA	2	"FAM186B,MCRS1"
TCGA.A6.3808.01A	12	49960421	50860695	184	0.2266	NEUTRAL	NA	20	"AQP2,AQP5,AQP6,ASIC1,BCDIN3D,CERS5,COX14,FAIM2,FAM186A,FAM186B,FMNL3,GPD1,LARP4,LIMA1,MCRS1,NCKAP5L,PRPF40B,RACGAP1,SMARCD1,TMBIM6"
TCGA.AA.A010.01A	12	49993845	50037417	23	-0.0776	NEUTRAL	NA	3	"FAM186B,FMNL3,PRPF40B"
TCGA.AG.3909.01A	12	49996921	50031500	16	0.0086	NEUTRAL	NA	2	"FAM186B,PRPF40B"
TCGA.AG.A00C.01A	12	49998058	50031500	15	0.2587	NEUTRAL	NA	2	"FAM186B,PRPF40B"
TCGA.AA.3930.01A	12	50026579	50045676	24	-0.2245	NEUTRAL	NA	2	"FMNL3,PRPF40B"
TCGA.AG.A00C.01A	12	50035664	50410379	82	-0.0361	NEUTRAL	NA	10	"AQP2,AQP5,AQP6,BCDIN3D,FAIM2,FMNL3,NCKAP5L,PRPF40B,RACGAP1,TMBIM6"
TCGA.AA.A02K.01A	12	50035665	50055700	24	-0.3648	NEUTRAL	NA	2	"FMNL3,PRPF40B"
TCGA.AA.3930.01A	12	50046992	50236620	34	0.1509	NEUTRAL	NA	4	"BCDIN3D,FMNL3,NCKAP5L,TMBIM6"
TCGA.AA.A02K.01A	12	50059557	50453543	66	-0.0482	NEUTRAL	NA	10	"AQP2,AQP5,AQP6,ASIC1,BCDIN3D,FAIM2,FMNL3,NCKAP5L,RACGAP1,TMBIM6"
TCGA.AG.3909.01A	12	50185594	50291722	22	-0.17	NEUTRAL	NA	3	"BCDIN3D,FAIM2,NCKAP5L"
TCGA.A6.3810.01A	12	50185594	54379006	819	-0.2866	NEUTRAL	NA	96	"AAAS,ACVR1B,ACVRL1,AMHR2,ANKRD33,AQP2,AQP5,AQP6,ASIC1,ATF1,ATF7,ATG101,ATP5G2,BCDIN3D,BIN2,C12orf10,C12orf80,CALCOCO1,CELA1,CERS5,COX14,CSAD,CSRNP2,DAZAP2,DIP2B,EIF4B,ESPL1,FAIM2,FAM186A,FIGNL2,GALNT6,GPD1,GRASP,HIGD1C,HOXC10,HOXC11,HOXC12,HOXC13,IGFBP6,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LARP4,LETMD1,LIMA1,MAP3K12,METTL7A,MFSD5,NCKAP5L,NPFF,NR4A1,PCBP2,PFDN5,POU6F1,PRR13,RACGAP1,RARG,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,SOAT2,SP1,SP7,SPRYD3,TARBP2,TFCP2,TMPRSS12,TNS2,ZNF740"
TCGA.AG.3891.01A	12	50186190	50236620	10	0.1381	NEUTRAL	NA	2	"BCDIN3D,NCKAP5L"
TCGA.AA.A00N.01A	12	50232255	50358724	23	-0.3567	NEUTRAL	NA	4	"AQP2,AQP5,BCDIN3D,FAIM2"
TCGA.AG.3611.01A	12	50232255	52281942	249	0.1128	NEUTRAL	NA	33	"ANKRD33,AQP2,AQP5,AQP6,ASIC1,ATF1,BCDIN3D,BIN2,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DIP2B,FAIM2,FAM186A,FIGNL2,GALNT6,GPD1,HIGD1C,LARP4,LETMD1,LIMA1,METTL7A,POU6F1,RACGAP1,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,TFCP2,TMPRSS12"
TCGA.AA.3930.01A	12	50264249	50291237	9	-0.3359	NEUTRAL	NA	1	FAIM2
TCGA.AG.3891.01A	12	50264249	50355784	16	-0.2091	NEUTRAL	NA	3	"AQP2,AQP5,FAIM2"
TCGA.AG.A01L.01A	12	50290752	53671577	627	0.0648	NEUTRAL	NA	76	"ACVR1B,ACVRL1,ANKRD33,AQP2,AQP5,AQP6,ASIC1,ATF1,ATG101,BIN2,C12orf80,CELA1,CERS5,COX14,CSAD,CSRNP2,DAZAP2,DIP2B,EIF4B,ESPL1,FAIM2,FAM186A,FIGNL2,GALNT6,GPD1,GRASP,HIGD1C,IGFBP6,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LARP4,LETMD1,LIMA1,METTL7A,MFSD5,NR4A1,POU6F1,RACGAP1,RARG,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,SOAT2,SPRYD3,TFCP2,TMPRSS12,TNS2,ZNF740"
TCGA.AA.3930.01A	12	50291722	51493397	187	0.167	NEUTRAL	NA	22	"AQP2,AQP5,AQP6,ASIC1,ATF1,CERS5,COX14,CSRNP2,DIP2B,FAIM2,FAM186A,GPD1,HIGD1C,LARP4,LETMD1,LIMA1,METTL7A,RACGAP1,SLC11A2,SMARCD1,TFCP2,TMPRSS12"
TCGA.AA.A01Q.01A	12	50294866	50358724	11	-0.3912	NEUTRAL	NA	3	"AQP2,AQP5,FAIM2"
TCGA.AA.A00L.01A	12	50344622	50368479	12	-0.3833	NEUTRAL	NA	3	"AQP2,AQP5,AQP6"
TCGA.AG.3891.01A	12	50357235	52827581	378	0.1694	NEUTRAL	NA	45	"ACVR1B,ACVRL1,ANKRD33,AQP5,AQP6,ASIC1,ATF1,ATG101,BIN2,C12orf80,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DIP2B,FAM186A,FIGNL2,GALNT6,GPD1,GRASP,HIGD1C,KRT7,KRT75,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LARP4,LETMD1,LIMA1,METTL7A,NR4A1,POU6F1,RACGAP1,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,TFCP2,TMPRSS12"
TCGA.AA.A00N.01A	12	50366920	50410379	18	0.1224	NEUTRAL	NA	2	"AQP6,RACGAP1"
TCGA.AA.A01Q.01A	12	50366920	50410379	18	0.0539	NEUTRAL	NA	2	"AQP6,RACGAP1"
TCGA.AA.A00L.01A	12	50369237	55038442	786	0.0433	NEUTRAL	NA	110	Too-Many
TCGA.AA.A010.01A	12	50390802	50410379	9	-0.1724	NEUTRAL	NA	1	RACGAP1
TCGA.CK.5914.01A	12	50410379	50472187	6	-0.41	NEUTRAL	NA	2	"ASIC1,RACGAP1"
TCGA.AA.A01Q.01A	12	50452500	50472187	5	-0.4401	NEUTRAL	NA	1	ASIC1
TCGA.AA.A02K.01A	12	50470948	50492460	17	0.2854	NEUTRAL	NA	2	"ASIC1,SMARCD1"
TCGA.AA.A010.01A	12	50474823	52174401	247	0.3513	NEUTRAL	NA	25	"ASIC1,ATF1,BIN2,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DIP2B,FAM186A,GALNT6,GPD1,HIGD1C,LARP4,LETMD1,LIMA1,METTL7A,POU6F1,SCN8A,SLC11A2,SLC4A8,SMAGP,SMARCD1,TFCP2,TMPRSS12"
TCGA.AG.4015	12	50482920	50807569	45	0.3278	NEUTRAL	NA	7	"CERS5,COX14,FAM186A,GPD1,LARP4,LIMA1,SMARCD1"
TCGA.AG.4009.01A	12	50488182	51115018	72	0.0016	NEUTRAL	NA	8	"CERS5,COX14,DIP2B,FAM186A,GPD1,LARP4,LIMA1,SMARCD1"
TCGA.CK.5914.01A	12	50492479	51442100	124	0.1812	NEUTRAL	NA	14	"ATF1,CERS5,COX14,DIP2B,FAM186A,GPD1,HIGD1C,LARP4,LETMD1,LIMA1,METTL7A,SLC11A2,SMARCD1,TMPRSS12"
TCGA.AA.A00N.01A	12	50497757	50744064	34	0.1297	NEUTRAL	NA	5	"CERS5,COX14,FAM186A,GPD1,LIMA1"
TCGA.AG.A00C.01A	12	50497757	54645774	729	0.0654	NEUTRAL	NA	94	"AAAS,ACVR1B,ACVRL1,AMHR2,ANKRD33,ATF1,ATF7,ATG101,ATP5G2,BIN2,C12orf10,C12orf80,CALCOCO1,CBX5,CELA1,CERS5,COX14,CSAD,CSRNP2,DAZAP2,DIP2B,EIF4B,ESPL1,FAM186A,FIGNL2,GALNT6,GPD1,GRASP,HIGD1C,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,IGFBP6,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LARP4,LETMD1,LIMA1,MAP3K12,METTL7A,MFSD5,NPFF,NR4A1,PCBP2,PFDN5,POU6F1,PRR13,RARG,SCN8A,SLC11A2,SLC4A8,SMAGP,SMUG1,SOAT2,SP1,SP7,SPRYD3,TARBP2,TFCP2,TMPRSS12,TNS2,ZNF740"
TCGA.AA.A02K.01A	12	50497758	50503158	8	-0.2329	NEUTRAL	NA	1	GPD1
TCGA.AG.3909.01A	12	50500024	50503193	5	-0.3393	NEUTRAL	NA	1	GPD1
TCGA.AA.A01Q.01A	12	50500024	50513775	6	-0.2933	NEUTRAL	NA	2	"COX14,GPD1"
TCGA.AG.3909.01A	12	50513775	50848046	32	0.2968	NEUTRAL	NA	5	"CERS5,COX14,FAM186A,LARP4,LIMA1"
TCGA.AA.A02K.01A	12	50513810	51739530	178	0.193	NEUTRAL	NA	19	"ATF1,BIN2,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DIP2B,FAM186A,HIGD1C,LARP4,LETMD1,LIMA1,METTL7A,POU6F1,SLC11A2,SMAGP,TFCP2,TMPRSS12"
TCGA.AA.A01Q.01A	12	50524280	51734978	130	0.2048	NEUTRAL	NA	18	"ATF1,BIN2,CELA1,CERS5,CSRNP2,DAZAP2,DIP2B,FAM186A,HIGD1C,LARP4,LETMD1,LIMA1,METTL7A,POU6F1,SLC11A2,SMAGP,TFCP2,TMPRSS12"
TCGA.AG.A01W.01A	12	50593151	50673990	16	-0.3065	NEUTRAL	NA	1	LIMA1
TCGA.AG.A01W.01A	12	50734419	50851459	8	0.031	NEUTRAL	NA	2	"FAM186A,LARP4"
TCGA.AA.A00N.01A	12	50746456	50790054	4	-0.1495	NEUTRAL	NA	1	FAM186A
TCGA.AG.A015.01A	12	50847216	51590507	103	0.3401	NEUTRAL	NA	11	"ATF1,CSRNP2,DIP2B,HIGD1C,LARP4,LETMD1,METTL7A,POU6F1,SLC11A2,TFCP2,TMPRSS12"
TCGA.AG.3909.01A	12	50854881	50856333	2	-0.1308	NEUTRAL	NA	1	LARP4
TCGA.AA.A00N.01A	12	50856333	51019708	6	-0.1709	NEUTRAL	NA	2	"DIP2B,LARP4"
TCGA.AG.4015	12	50860862	121168244	21710	-0.3048	NEUTRAL	NA	528	Too-Many
TCGA.AZ.4684.01A	12	50867730	55040823	818	5.00E-04	NEUTRAL	NA	101	Too-Many
TCGA.AA.3509.01A	12	50869281	54855823	758	-0.0319	NEUTRAL	NA	96	"AAAS,ACVR1B,ACVRL1,AMHR2,ANKRD33,ATF1,ATF7,ATG101,ATP5G2,BIN2,C12orf10,C12orf80,CALCOCO1,CBX5,CELA1,COPZ1,CSAD,CSRNP2,DAZAP2,DIP2B,EIF4B,ESPL1,FIGNL2,GALNT6,GPR84,GRASP,GTSF1,HIGD1C,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,IGFBP6,ITGA5,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LARP4,LETMD1,MAP3K12,METTL7A,MFSD5,NFE2,NPFF,NR4A1,PCBP2,PFDN5,POU6F1,PRR13,RARG,SCN8A,SLC11A2,SLC4A8,SMAGP,SMUG1,SOAT2,SP1,SP7,SPRYD3,TARBP2,TFCP2,TMPRSS12,TNS2,ZNF385A,ZNF740"
TCGA.A6.3808.01A	12	50898892	53699682	582	0.1645	NEUTRAL	NA	65	"ACVR1B,ACVRL1,ANKRD33,ATF1,ATG101,BIN2,C12orf10,C12orf80,CELA1,CSAD,CSRNP2,DAZAP2,DIP2B,EIF4B,ESPL1,FIGNL2,GALNT6,GRASP,HIGD1C,IGFBP6,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LETMD1,METTL7A,MFSD5,NR4A1,PFDN5,POU6F1,RARG,SCN8A,SLC11A2,SLC4A8,SMAGP,SOAT2,SPRYD3,TFCP2,TMPRSS12,TNS2,ZNF740"
TCGA.AG.A01W.01A	12	50915175	50995292	23	-0.1255	NEUTRAL	NA	1	DIP2B
TCGA.AG.A01W.01A	12	50995893	51065092	23	0.3406	NEUTRAL	NA	1	DIP2B
TCGA.AG.3909.01A	12	51019708	51461425	74	0.3771	NEUTRAL	NA	8	"ATF1,CSRNP2,DIP2B,HIGD1C,LETMD1,METTL7A,SLC11A2,TMPRSS12"
TCGA.AG.A01W.01A	12	51075020	51113838	17	-0.38	NEUTRAL	NA	1	DIP2B
TCGA.AG.4009.01A	12	51116945	51173879	13	-0.2772	NEUTRAL	NA	2	"ATF1,DIP2B"
TCGA.AG.A01W.01A	12	51127205	51199863	27	0.2162	NEUTRAL	NA	2	"ATF1,DIP2B"
TCGA.AA.A00N.01A	12	51127862	51398521	32	0.2007	NEUTRAL	NA	6	"ATF1,DIP2B,HIGD1C,METTL7A,SLC11A2,TMPRSS12"
TCGA.AG.4009.01A	12	51189645	51640479	64	0.0154	NEUTRAL	NA	11	"ATF1,CSRNP2,DAZAP2,HIGD1C,LETMD1,METTL7A,POU6F1,SLC11A2,SMAGP,TFCP2,TMPRSS12"
TCGA.BM.6198	12	51219700	64633671	3718	-0.05595	NEUTRAL	NA	216	Too-Many
TCGA.AG.A01W.01A	12	51251359	51475410	61	-0.051	NEUTRAL	NA	6	"CSRNP2,HIGD1C,LETMD1,METTL7A,SLC11A2,TMPRSS12"
TCGA.AA.A00N.01A	12	51399094	51632602	35	-0.0699	NEUTRAL	NA	6	"CSRNP2,DAZAP2,LETMD1,POU6F1,SLC11A2,TFCP2"
TCGA.CK.5914.01A	12	51453089	51632602	26	-0.1222	NEUTRAL	NA	5	"CSRNP2,DAZAP2,LETMD1,POU6F1,TFCP2"
TCGA.AG.3909.01A	12	51467589	51632602	23	-0.049	NEUTRAL	NA	4	"CSRNP2,DAZAP2,POU6F1,TFCP2"
TCGA.AG.A01W.01A	12	51487084	51528562	24	-0.4868	NEUTRAL	NA	1	TFCP2
TCGA.AG.A023.01A	12	51500254	53877393	512	-0.1641	NEUTRAL	NA	64	"AAAS,ACVR1B,ACVRL1,AMHR2,ANKRD33,ATG101,BIN2,C12orf10,C12orf80,CELA1,CSAD,DAZAP2,EIF4B,ESPL1,FIGNL2,GALNT6,GRASP,IGFBP6,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,MAP3K12,MFSD5,NR4A1,PCBP2,PFDN5,POU6F1,PRR13,RARG,SCN8A,SLC4A8,SMAGP,SOAT2,SP1,SP7,SPRYD3,TFCP2,TNS2,ZNF740"
TCGA.AA.3930.01A	12	51502887	52773575	184	0.2494	NEUTRAL	NA	24	"ACVR1B,ACVRL1,ANKRD33,ATG101,BIN2,C12orf80,CELA1,DAZAP2,FIGNL2,GALNT6,GRASP,KRT7,KRT80,KRT81,KRT83,KRT84,KRT85,KRT86,NR4A1,POU6F1,SCN8A,SLC4A8,SMAGP,TFCP2"
TCGA.AG.A01W.01A	12	51577483	51580073	5	-0.0254	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	51630750	51720136	18	-0.2761	NEUTRAL	NA	3	"BIN2,DAZAP2,SMAGP"
TCGA.AG.A015.01A	12	51632602	51640479	6	-0.1634	NEUTRAL	NA	2	"DAZAP2,SMAGP"
TCGA.AG.3909.01A	12	51640479	51723418	17	-0.1913	NEUTRAL	NA	4	"BIN2,CELA1,DAZAP2,SMAGP"
TCGA.AG.A015.01A	12	51662949	51696429	11	0.3007	NEUTRAL	NA	2	"BIN2,SMAGP"
TCGA.AG.4009.01A	12	51681855	52182416	74	0.0441	NEUTRAL	NA	5	"BIN2,CELA1,GALNT6,SCN8A,SLC4A8"
TCGA.AA.A00N.01A	12	51685352	51723418	12	-0.2618	NEUTRAL	NA	2	"BIN2,CELA1"
TCGA.CK.5914.01A	12	51685352	52188128	78	0.1341	NEUTRAL	NA	5	"BIN2,CELA1,GALNT6,SCN8A,SLC4A8"
TCGA.AG.A015.01A	12	51696797	51737497	9	-0.0188	NEUTRAL	NA	2	"BIN2,CELA1"
TCGA.AG.A01W.01A	12	51729149	51738320	13	0.1548	NEUTRAL	NA	1	CELA1
TCGA.AG.3909.01A	12	51733593	52215997	67	0.3719	NEUTRAL	NA	5	"CELA1,FIGNL2,GALNT6,SCN8A,SLC4A8"
TCGA.AA.A01Q.01A	12	51736332	51754456	10	-0.3963	NEUTRAL	NA	2	"CELA1,GALNT6"
TCGA.AG.A01W.01A	12	51739050	51780767	18	-0.3722	NEUTRAL	NA	2	"CELA1,GALNT6"
TCGA.AA.A02K.01A	12	51740319	51757886	8	-0.2167	NEUTRAL	NA	2	"CELA1,GALNT6"
TCGA.AA.A01Q.01A	12	51757868	52145119	33	0.2719	NEUTRAL	NA	3	"GALNT6,SCN8A,SLC4A8"
TCGA.AG.A015.01A	12	51757868	52710642	119	0.2475	NEUTRAL	NA	16	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,FIGNL2,GALNT6,GRASP,KRT7,KRT80,KRT81,KRT83,KRT86,NR4A1,SCN8A,SLC4A8"
TCGA.AA.A02K.01A	12	51759168	53433869	315	0.1548	NEUTRAL	NA	39	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,EIF4B,FIGNL2,GALNT6,GRASP,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,NR4A1,SCN8A,SLC4A8"
TCGA.AG.A01W.01A	12	51781046	51841115	21	0.2948	NEUTRAL	NA	2	"GALNT6,SLC4A8"
TCGA.AG.A01W.01A	12	51850065	51957835	46	-0.0677	NEUTRAL	NA	1	SLC4A8
TCGA.AA.A00D.01A	12	51863381	51888681	10	-0.4534	NEUTRAL	NA	1	SLC4A8
TCGA.AD.6963	12	51879825	133777644	26011	-0.0347	NEUTRAL	NA	612	Too-Many
TCGA.AA.A00D.01A	12	51890759	52789461	104	0.0549	NEUTRAL	NA	18	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,FIGNL2,GRASP,KRT7,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,NR4A1,SCN8A,SLC4A8"
TCGA.AG.A01W.01A	12	51959755	51970085	10	0.2897	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	51970842	51977872	9	-0.287	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	52008156	52937514	111	-0.2577	NEUTRAL	NA	22	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,FIGNL2,GRASP,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT75,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,NR4A1,SCN8A"
TCGA.AG.4009.01A	12	52183013	52470549	38	-0.4816	NEUTRAL	NA	8	"ACVR1B,ACVRL1,ANKRD33,ATG101,FIGNL2,GRASP,NR4A1,SCN8A"
TCGA.F4.6459	12	52227497	62531411	2879	-0.0478	NEUTRAL	NA	192	Too-Many
TCGA.AM.5820	12	52246935	53245590	510	0.2953	NEUTRAL	NA	32	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,GRASP,KRT1,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,NR4A1"
TCGA.AA.A010.01A	12	52281942	52312722	13	-0.1393	NEUTRAL	NA	2	"ACVRL1,ANKRD33"
TCGA.AA.A00Q.01A	12	52281942	52681739	55	-0.0707	NEUTRAL	NA	10	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,GRASP,KRT7,KRT80,KRT81,NR4A1"
TCGA.AG.3611.01A	12	52282312	53162459	189	-0.1591	NEUTRAL	NA	28	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,GRASP,KRT1,KRT2,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,NR4A1"
TCGA.CK.5914.01A	12	52377732	52826793	91	-0.3178	NEUTRAL	NA	14	"ACVR1B,ATG101,C12orf80,GRASP,KRT7,KRT75,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,NR4A1"
TCGA.AG.A016.01A	12	52407871	53671577	328	-0.1117	NEUTRAL	NA	42	"ATG101,C12orf80,CSAD,EIF4B,ESPL1,GRASP,IGFBP6,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,MFSD5,NR4A1,RARG,SOAT2,SPRYD3,TNS2,ZNF740"
TCGA.AG.3906.01A	12	52448061	52639145	22	0.3484	NEUTRAL	NA	5	"ATG101,C12orf80,KRT7,KRT80,NR4A1"
TCGA.AA.3982	12	52516350	55079988	880	0.2766	NEUTRAL	NA	76	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,C12orf80,CALCOCO1,CBX5,COPZ1,CSAD,DCD,EIF4B,ESPL1,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,IGFBP6,ITGA5,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT7,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LACRT,MAP3K12,MFSD5,NCKAP1L,NFE2,NPFF,PCBP2,PDE1B,PFDN5,PPP1R1A,PRR13,RARG,SMUG1,SOAT2,SP1,SP7,SPRYD3,TARBP2,TNS2,ZNF385A,ZNF740"
TCGA.AG.4009.01A	12	52565135	52627041	9	0.3159	NEUTRAL	NA	3	"C12orf80,KRT7,KRT80"
TCGA.AA.A010.01A	12	52565135	52826793	72	0.2503	NEUTRAL	NA	10	"C12orf80,KRT7,KRT75,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86"
TCGA.AG.3906.01A	12	52641898	52776171	37	-0.1672	NEUTRAL	NA	6	"KRT7,KRT81,KRT83,KRT84,KRT85,KRT86"
TCGA.AA.A01Q.01A	12	52680834	52708388	15	-0.0322	NEUTRAL	NA	3	"KRT81,KRT83,KRT86"
TCGA.AG.4009.01A	12	52680834	52788708	36	0.1322	NEUTRAL	NA	6	"KRT81,KRT82,KRT83,KRT84,KRT85,KRT86"
TCGA.AA.A00Q.01A	12	52698986	52758715	19	-0.4559	NEUTRAL	NA	3	"KRT83,KRT85,KRT86"
TCGA.AA.A00Q.01A	12	52760788	52909500	48	-2.00E-04	NEUTRAL	NA	8	"KRT5,KRT6A,KRT6B,KRT6C,KRT75,KRT82,KRT84,KRT85"
TCGA.AG.A015.01A	12	52771778	53242284	153	0.2469	NEUTRAL	NA	19	"KRT1,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT82,KRT84"
TCGA.AA.3930.01A	12	52774095	52797445	15	-0.2379	NEUTRAL	NA	2	"KRT82,KRT84"
TCGA.AG.3906.01A	12	52776722	52826793	20	0.0728	NEUTRAL	NA	3	"KRT75,KRT82,KRT84"
TCGA.AG.3909.01A	12	52788708	52799643	9	-0.391	NEUTRAL	NA	1	KRT82
TCGA.AG.4009.01A	12	52789461	52822099	11	-0.2612	NEUTRAL	NA	2	"KRT75,KRT82"
TCGA.AA.A00D.01A	12	52789754	53292177	137	-0.3036	NEUTRAL	NA	19	"KRT1,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT82"
TCGA.AA.A00N.01A	12	52799643	52826793	9	-0.0016	NEUTRAL	NA	2	"KRT75,KRT82"
TCGA.AA.3930.01A	12	52799643	55248820	525	0.226	NEUTRAL	NA	69	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,CALCOCO1,CBX5,COPZ1,CSAD,DCD,EIF4B,ESPL1,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,IGFBP6,ITGA5,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT72,KRT73,KRT74,KRT75,KRT76,KRT77,KRT78,KRT79,KRT8,KRT82,LACRT,MAP3K12,MFSD5,MUCL1,NCKAP1L,NFE2,NPFF,PCBP2,PDE1B,PFDN5,PPP1R1A,PRR13,RARG,SMUG1,SOAT2,SP1,SP7,SPRYD3,TARBP2,TNS2,ZNF385A,ZNF740"
TCGA.AA.A01Q.01A	12	52818274	52826793	8	-0.2105	NEUTRAL	NA	1	KRT75
TCGA.AG.3909.01A	12	52818274	52844171	15	0.3632	NEUTRAL	NA	2	"KRT6B,KRT75"
TCGA.AG.4009.01A	12	52822385	52965658	48	0.2411	NEUTRAL	NA	7	"KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT74,KRT75"
TCGA.AA.A024.01A	12	52825273	53041909	70	-0.3523	NEUTRAL	NA	10	"KRT2,KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT72,KRT73,KRT74,KRT75"
TCGA.AG.3906.01A	12	52827581	52908697	21	-0.43	NEUTRAL	NA	5	"KRT5,KRT6A,KRT6B,KRT6C,KRT75"
TCGA.CK.5914.01A	12	52827581	53070050	73	0.0776	NEUTRAL	NA	11	"KRT1,KRT2,KRT5,KRT6A,KRT6B,KRT6C,KRT71,KRT72,KRT73,KRT74,KRT75"
TCGA.AG.3891.01A	12	52840972	52882159	15	-0.3687	NEUTRAL	NA	3	"KRT6A,KRT6B,KRT6C"
TCGA.AG.3891.01A	12	52883678	53428349	136	0.0835	NEUTRAL	NA	17	"EIF4B,KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT71,KRT72,KRT73,KRT74,KRT76,KRT77,KRT78,KRT79,KRT8"
TCGA.AA.A01Q.01A	12	52909500	53292177	105	-0.1116	NEUTRAL	NA	14	"KRT1,KRT2,KRT3,KRT4,KRT5,KRT71,KRT72,KRT73,KRT74,KRT76,KRT77,KRT78,KRT79,KRT8"
TCGA.AG.3906.01A	12	52909500	53345852	120	0.0356	NEUTRAL	NA	15	"KRT1,KRT18,KRT2,KRT3,KRT4,KRT5,KRT71,KRT72,KRT73,KRT74,KRT76,KRT77,KRT78,KRT79,KRT8"
TCGA.AA.A00Q.01A	12	52910369	53170484	72	-0.3251	NEUTRAL	NA	9	"KRT1,KRT2,KRT5,KRT71,KRT72,KRT73,KRT74,KRT76,KRT77"
TCGA.AG.4009.01A	12	52966188	53096674	43	-0.2112	NEUTRAL	NA	6	"KRT1,KRT2,KRT72,KRT73,KRT74,KRT77"
TCGA.AG.A01W.01A	12	52972389	53064428	19	-0.4226	NEUTRAL	NA	3	"KRT2,KRT72,KRT73"
TCGA.AA.A00N.01A	12	52979724	53045325	26	-0.0086	NEUTRAL	NA	3	"KRT2,KRT72,KRT73"
TCGA.AG.3909.01A	12	52979724	53045325	26	0.1178	NEUTRAL	NA	3	"KRT2,KRT72,KRT73"
TCGA.AA.A010.01A	12	53007465	53096674	28	0.3662	NEUTRAL	NA	4	"KRT1,KRT2,KRT73,KRT77"
TCGA.AA.A024.01A	12	53042738	56418798	578	0.0672	NEUTRAL	NA	93	"AAAS,AMHR2,ATF7,ATP5G2,BLOC1S1,C12orf10,CALCOCO1,CBX5,CD63,CDK2,COPZ1,CSAD,DCD,DGKA,DNAJC14,EIF4B,ESPL1,GDF11,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,IGFBP6,IKZF4,ITGA5,ITGA7,ITGB7,KRT1,KRT18,KRT2,KRT3,KRT4,KRT76,KRT77,KRT78,KRT79,KRT8,LACRT,MAP3K12,METTL7B,MFSD5,MMP19,MUCL1,NCKAP1L,NEUROD4,NFE2,NPFF,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,ORMDL2,PCBP2,PDE1B,PFDN5,PMEL,PPP1R1A,PRR13,RAB5B,RARG,RDH5,SARNP,SMUG1,SOAT2,SP1,SP7,SPRYD3,SUOX,TARBP2,TESPA1,TNS2,WIBG,ZNF385A,ZNF740"
TCGA.AG.A01W.01A	12	53071213	53084706	11	0.177	NEUTRAL	NA	2	"KRT1,KRT77"
TCGA.CK.5914.01A	12	53073494	53200816	27	-0.2772	NEUTRAL	NA	5	"KRT1,KRT3,KRT4,KRT76,KRT77"
TCGA.AG.A01W.01A	12	53139073	53145067	6	0.1714	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	53151215	53256002	37	-0.3656	NEUTRAL	NA	5	"KRT3,KRT4,KRT76,KRT78,KRT79"
TCGA.AG.4009.01A	12	53162459	53241679	39	0.2601	NEUTRAL	NA	5	"KRT3,KRT4,KRT76,KRT78,KRT79"
TCGA.AG.3611.01A	12	53163250	54069785	237	0.1344	NEUTRAL	NA	31	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,CSAD,EIF4B,ESPL1,IGFBP6,ITGB7,KRT18,KRT3,KRT4,KRT76,KRT78,KRT79,KRT8,MAP3K12,MFSD5,NPFF,PCBP2,PFDN5,PRR13,RARG,SOAT2,SP1,SP7,SPRYD3,TARBP2,TNS2,ZNF740"
TCGA.AA.A00N.01A	12	53184542	53187866	7	-0.4245	NEUTRAL	NA	1	KRT3
TCGA.AG.3909.01A	12	53184542	53200816	9	0.035	NEUTRAL	NA	2	"KRT3,KRT4"
TCGA.AA.3715	12	53201127	133777644	25483	0.3459	NEUTRAL	NA	580	Too-Many
TCGA.DM.A1HB	12	53202182	131569104	24545	0.0037	NEUTRAL	NA	556	Too-Many
TCGA.AA.A00Q.01A	12	53215626	56982669	690	-0.037	NEUTRAL	NA	112	Too-Many
TCGA.AA.A00F.01A	12	53216050	53242284	15	-0.3085	NEUTRAL	NA	2	"KRT78,KRT79"
TCGA.AA.A010.01A	12	53237850	53400178	23	0.0991	NEUTRAL	NA	4	"EIF4B,KRT18,KRT78,KRT8"
TCGA.AG.4009.01A	12	53242284	53298401	9	0.0063	NEUTRAL	NA	2	"KRT78,KRT8"
TCGA.AM.5820	12	53245903	130908021	24704	0.0023	NEUTRAL	NA	550	Too-Many
TCGA.AG.3909.01A	12	53292177	53461907	54	-0.0388	NEUTRAL	NA	5	"EIF4B,KRT18,KRT8,SPRYD3,TNS2"
TCGA.AA.A00F.01A	12	53292177	53517782	53	0.2044	NEUTRAL	NA	7	"EIF4B,IGFBP6,KRT18,KRT8,SOAT2,SPRYD3,TNS2"
TCGA.CK.5914.01A	12	53294320	53428349	21	-0.1188	NEUTRAL	NA	3	"EIF4B,KRT18,KRT8"
TCGA.AA.A01Q.01A	12	53294320	53512600	53	-0.333	NEUTRAL	NA	7	"EIF4B,IGFBP6,KRT18,KRT8,SOAT2,SPRYD3,TNS2"
TCGA.AA.A00D.01A	12	53294320	54105691	197	0.0955	NEUTRAL	NA	27	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,CALCOCO1,CSAD,EIF4B,ESPL1,IGFBP6,ITGB7,KRT18,KRT8,MAP3K12,MFSD5,NPFF,PCBP2,PFDN5,PRR13,RARG,SOAT2,SP1,SP7,SPRYD3,TARBP2,TNS2,ZNF740"
TCGA.AG.A01W.01A	12	53311738	53446054	11	-0.2979	NEUTRAL	NA	4	"EIF4B,KRT18,KRT8,TNS2"
TCGA.AG.4009.01A	12	53342907	53456354	40	-0.3816	NEUTRAL	NA	4	"EIF4B,KRT18,KRT8,TNS2"
TCGA.AG.A015.01A	12	53343336	53433876	20	0.1789	NEUTRAL	NA	3	"EIF4B,KRT18,KRT8"
TCGA.AG.3906.01A	12	53346454	53427548	9	0.3626	NEUTRAL	NA	2	"EIF4B,KRT18"
TCGA.AA.A02K.01A	12	53442882	53455582	17	-0.3087	NEUTRAL	NA	1	TNS2
TCGA.AG.A01W.01A	12	53446575	54376308	47	0.2312	NEUTRAL	NA	27	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,CALCOCO1,CSAD,ESPL1,HOXC11,HOXC12,HOXC13,IGFBP6,ITGB7,MAP3K12,MFSD5,NPFF,PCBP2,PFDN5,PRR13,RARG,SOAT2,SP1,SP7,SPRYD3,TARBP2,TNS2,ZNF740"
TCGA.AA.A02K.01A	12	53455882	53675255	85	0.2327	NEUTRAL	NA	10	"CSAD,ESPL1,IGFBP6,ITGB7,MFSD5,RARG,SOAT2,SPRYD3,TNS2,ZNF740"
TCGA.AG.4009.01A	12	53456826	53499285	16	0.0551	NEUTRAL	NA	4	"IGFBP6,SOAT2,SPRYD3,TNS2"
TCGA.AG.A015.01A	12	53459569	53689583	96	0.3166	NEUTRAL	NA	10	"CSAD,ESPL1,IGFBP6,ITGB7,MFSD5,PFDN5,RARG,SOAT2,SPRYD3,ZNF740"
TCGA.AG.3906.01A	12	53459569	54756394	240	0.2103	NEUTRAL	NA	38	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,CALCOCO1,CBX5,COPZ1,CSAD,ESPL1,GPR84,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,IGFBP6,ITGB7,MAP3K12,MFSD5,NFE2,NPFF,PCBP2,PFDN5,PRR13,RARG,SMUG1,SOAT2,SP1,SP7,SPRYD3,TARBP2,ZNF740"
TCGA.AA.A010.01A	12	53470880	53554862	26	0.1493	NEUTRAL	NA	4	"CSAD,IGFBP6,SOAT2,SPRYD3"
TCGA.AG.3891.01A	12	53499654	53567437	22	0.0188	NEUTRAL	NA	2	"CSAD,SOAT2"
TCGA.AG.3909.01A	12	53512860	53517782	6	-0.4527	NEUTRAL	NA	1	SOAT2
TCGA.AA.A00F.01A	12	53552244	53565068	8	-0.1895	NEUTRAL	NA	1	CSAD
TCGA.AG.3909.01A	12	53552244	53567437	11	0.3641	NEUTRAL	NA	1	CSAD
TCGA.AG.4009.01A	12	53552244	53594040	30	-0.3356	NEUTRAL	NA	3	"CSAD,ITGB7,ZNF740"
TCGA.AA.A00F.01A	12	53565625	54676047	175	0.1247	NEUTRAL	NA	32	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,CALCOCO1,CBX5,CSAD,ESPL1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGB7,MAP3K12,MFSD5,NPFF,PCBP2,PFDN5,PRR13,RARG,SMUG1,SP1,SP7,TARBP2,ZNF740"
TCGA.AG.3891.01A	12	53581233	53839720	91	0.2895	NEUTRAL	NA	12	"AAAS,AMHR2,C12orf10,ESPL1,ITGB7,MFSD5,PFDN5,PRR13,RARG,SP1,SP7,ZNF740"
TCGA.AG.4009.01A	12	53646613	53723133	53	0.2484	NEUTRAL	NA	6	"AAAS,C12orf10,ESPL1,MFSD5,PFDN5,SP7"
TCGA.CK.5914.01A	12	53666488	53824914	63	-0.2959	NEUTRAL	NA	7	"AAAS,AMHR2,C12orf10,ESPL1,PFDN5,SP1,SP7"
TCGA.AG.A016.01A	12	53673465	53682832	9	0.3571	NEUTRAL	NA	1	ESPL1
TCGA.AG.A01L.01A	12	53673465	53689947	21	0.3464	NEUTRAL	NA	2	"ESPL1,PFDN5"
TCGA.AA.A02K.01A	12	53676032	53684575	9	-0.3333	NEUTRAL	NA	1	ESPL1
TCGA.AA.A01Q.01A	12	53681764	54338745	109	-0.0647	NEUTRAL	NA	16	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,CALCOCO1,ESPL1,HOXC13,MAP3K12,NPFF,PCBP2,PFDN5,PRR13,SP1,SP7,TARBP2"
TCGA.AG.A016.01A	12	53683817	53689947	12	-0.2449	NEUTRAL	NA	2	"ESPL1,PFDN5"
TCGA.AA.A02K.01A	12	53685448	56346131	365	0.0996	NEUTRAL	NA	68	"AAAS,AMHR2,ATF7,ATP5G2,BLOC1S1,C12orf10,CALCOCO1,CBX5,CD63,COPZ1,DCD,DGKA,DNAJC14,ESPL1,GDF11,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,ITGA7,LACRT,MAP3K12,METTL7B,MMP19,MUCL1,NCKAP1L,NEUROD4,NFE2,NPFF,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,ORMDL2,PCBP2,PDE1B,PFDN5,PPP1R1A,PRR13,RDH5,SARNP,SMUG1,SP1,SP7,TARBP2,TESPA1,WIBG,ZNF385A"
TCGA.AA.A02R.01A	12	53687018	125450166	4876	0.3628	NEUTRAL	NA	528	Too-Many
TCGA.AG.A015.01A	12	53689947	53715077	19	-0.1115	NEUTRAL	NA	3	"AAAS,C12orf10,PFDN5"
TCGA.AG.A01L.01A	12	53691570	53723133	20	-0.3354	NEUTRAL	NA	4	"AAAS,C12orf10,PFDN5,SP7"
TCGA.A6.3808.01A	12	53700416	54069785	85	-0.2477	NEUTRAL	NA	12	"AAAS,AMHR2,ATF7,ATP5G2,C12orf10,MAP3K12,NPFF,PCBP2,PRR13,SP1,SP7,TARBP2"
TCGA.AA.A010.01A	12	53703337	53775925	14	-0.3975	NEUTRAL	NA	3	"AAAS,SP1,SP7"
TCGA.AG.A016.01A	12	53703337	56197383	295	-0.1957	NEUTRAL	NA	60	"AAAS,AMHR2,ATF7,ATP5G2,BLOC1S1,CALCOCO1,CBX5,CD63,COPZ1,DCD,GDF11,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,ITGA7,LACRT,MAP3K12,METTL7B,MUCL1,NCKAP1L,NEUROD4,NFE2,NPFF,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PCBP2,PDE1B,PPP1R1A,PRR13,RDH5,SARNP,SMUG1,SP1,SP7,TARBP2,TESPA1,ZNF385A"
TCGA.AA.A00N.01A	12	53708035	53824914	25	-0.3785	NEUTRAL	NA	4	"AAAS,AMHR2,SP1,SP7"
TCGA.AG.3909.01A	12	53709452	53775925	7	-0.4786	NEUTRAL	NA	3	"AAAS,SP1,SP7"
TCGA.AA.3967.01A	12	53709452	54852805	156	0.2913	NEUTRAL	NA	30	"AAAS,AMHR2,ATF7,ATP5G2,CALCOCO1,CBX5,COPZ1,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,MAP3K12,NFE2,NPFF,PCBP2,PRR13,SMUG1,SP1,SP7,TARBP2,ZNF385A"
TCGA.AG.A015.01A	12	53721881	56197383	284	0.2403	NEUTRAL	NA	59	"AMHR2,ATF7,ATP5G2,BLOC1S1,CALCOCO1,CBX5,CD63,COPZ1,DCD,GDF11,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,ITGA7,LACRT,MAP3K12,METTL7B,MUCL1,NCKAP1L,NEUROD4,NFE2,NPFF,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PCBP2,PDE1B,PPP1R1A,PRR13,RDH5,SARNP,SMUG1,SP1,SP7,TARBP2,TESPA1,ZNF385A"
TCGA.AG.4009.01A	12	53775421	53860941	25	-0.3272	NEUTRAL	NA	4	"AMHR2,PCBP2,PRR13,SP1"
TCGA.AG.A01L.01A	12	53775421	54936308	181	-0.0246	NEUTRAL	NA	29	"AMHR2,ATF7,ATP5G2,CALCOCO1,CBX5,COPZ1,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,MAP3K12,NCKAP1L,NFE2,NPFF,PCBP2,PRR13,SMUG1,SP1,TARBP2,ZNF385A"
TCGA.AG.3909.01A	12	53800317	53824914	11	0.3531	NEUTRAL	NA	2	"AMHR2,SP1"
TCGA.AA.A010.01A	12	53836419	53879802	25	0.2116	NEUTRAL	NA	3	"MAP3K12,PCBP2,PRR13"
TCGA.AG.4009.01A	12	53861507	54118821	54	0.1978	NEUTRAL	NA	7	"ATF7,ATP5G2,CALCOCO1,MAP3K12,NPFF,PCBP2,TARBP2"
TCGA.AG.3891.01A	12	53873108	54676815	83	0.2715	NEUTRAL	NA	19	"ATF7,ATP5G2,CALCOCO1,CBX5,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,MAP3K12,NPFF,PCBP2,SMUG1,TARBP2"
TCGA.AG.A023.01A	12	53878813	56212772	244	-0.0051	NEUTRAL	NA	55	"ATF7,ATP5G2,BLOC1S1,CALCOCO1,CBX5,CD63,COPZ1,DCD,GDF11,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,ITGA7,LACRT,MAP3K12,METTL7B,MUCL1,NCKAP1L,NEUROD4,NFE2,NPFF,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,ORMDL2,PDE1B,PPP1R1A,RDH5,SARNP,SMUG1,TARBP2,TESPA1,ZNF385A"
TCGA.AA.A01K.01A	12	53878813	56331145	271	0.0034	NEUTRAL	NA	59	"ATF7,ATP5G2,BLOC1S1,CALCOCO1,CBX5,CD63,COPZ1,DCD,DGKA,DNAJC14,GDF11,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,ITGA7,LACRT,MAP3K12,METTL7B,MMP19,MUCL1,NCKAP1L,NEUROD4,NFE2,NPFF,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,ORMDL2,PDE1B,PPP1R1A,RDH5,SARNP,SMUG1,TARBP2,TESPA1,WIBG,ZNF385A"
TCGA.AA.A01D.01A	12	53879802	56086591	208	-0.1738	NEUTRAL	NA	49	"ATF7,ATP5G2,CALCOCO1,CBX5,COPZ1,DCD,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,ITGA7,LACRT,MAP3K12,METTL7B,MUCL1,NCKAP1L,NEUROD4,NFE2,NPFF,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PDE1B,PPP1R1A,SMUG1,TARBP2,TESPA1,ZNF385A"
TCGA.AG.A02G.01A	12	53880679	133778682	5282	0.2337	NEUTRAL	NA	556	Too-Many
TCGA.CK.5914.01A	12	53895131	54118821	42	0.1907	NEUTRAL	NA	5	"ATF7,ATP5G2,CALCOCO1,NPFF,TARBP2"
TCGA.AG.3909.01A	12	53898127	53900512	6	-0.408	NEUTRAL	NA	2	"NPFF,TARBP2"
TCGA.AA.A00N.01A	12	53910951	54348707	34	0.0878	NEUTRAL	NA	4	"ATF7,ATP5G2,CALCOCO1,HOXC13"
TCGA.AA.A010.01A	12	53928278	54333242	26	0.2776	NEUTRAL	NA	4	"ATF7,ATP5G2,CALCOCO1,HOXC13"
TCGA.AG.3611.01A	12	54105691	54577408	36	-0.2211	NEUTRAL	NA	11	"CALCOCO1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,SMUG1"
TCGA.AA.A00D.01A	12	54106837	54117345	11	-0.356	NEUTRAL	NA	1	CALCOCO1
TCGA.A6.3808.01A	12	54117345	54893092	85	0.1451	NEUTRAL	NA	20	"CALCOCO1,CBX5,COPZ1,GPR84,GTSF1,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,ITGA5,NCKAP1L,NFE2,SMUG1,ZNF385A"
TCGA.AA.A00D.01A	12	54118407	54676047	27	0.2343	NEUTRAL	NA	13	"CALCOCO1,CBX5,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,SMUG1"
TCGA.AG.A01W.01A	12	54376920	54497634	35	-0.3426	NEUTRAL	NA	6	"HOXC10,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9"
TCGA.A6.3810.01A	12	54423387	56661538	405	-0.2972	NEUTRAL	NA	66	"ANKRD52,BLOC1S1,CBX5,CD63,CDK2,COPZ1,COQ10A,DCD,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,GPR84,GTSF1,HNRNPA1,HOXC4,HOXC5,HOXC6,IKZF4,ITGA5,ITGA7,LACRT,METTL7B,MMP19,MUCL1,MYL6,MYL6B,NABP2,NCKAP1L,NEUROD4,NFE2,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,ORMDL2,PA2G4,PDE1B,PMEL,PPP1R1A,RAB5B,RDH5,RNF41,RPL41,RPS26,SARNP,SLC39A5,SMARCC2,SMUG1,SUOX,TESPA1,WIBG,ZC3H10,ZNF385A"
TCGA.AA.A010.01A	12	54427690	54448597	4	-0.4291	NEUTRAL	NA	2	"HOXC4,HOXC5"
TCGA.AA.A01Q.01A	12	54447658	54651258	8	-0.2995	NEUTRAL	NA	3	"CBX5,HOXC4,SMUG1"
TCGA.DC.6155	12	54508760	60130422	1396	-0.3577	NEUTRAL	NA	123	Too-Many
TCGA.AG.3909.01A	12	54575828	54651258	6	-0.1088	NEUTRAL	NA	2	"CBX5,SMUG1"
TCGA.AA.A00N.01A	12	54575828	54677968	14	-0.1214	NEUTRAL	NA	3	"CBX5,HNRNPA1,SMUG1"
TCGA.AG.4009.01A	12	54575828	54744204	24	0.2179	NEUTRAL	NA	5	"CBX5,COPZ1,HNRNPA1,NFE2,SMUG1"
TCGA.AG.A01W.01A	12	54581790	54808322	92	-0.2694	NEUTRAL	NA	8	"CBX5,COPZ1,GPR84,HNRNPA1,ITGA5,NFE2,SMUG1,ZNF385A"
TCGA.AG.3611.01A	12	54635487	54743324	15	0.3757	NEUTRAL	NA	4	"CBX5,COPZ1,HNRNPA1,NFE2"
TCGA.AG.A00C.01A	12	54651258	54688867	11	-0.3005	NEUTRAL	NA	3	"CBX5,HNRNPA1,NFE2"
TCGA.AA.A00F.01A	12	54686146	54718885	3	-0.4542	NEUTRAL	NA	2	"COPZ1,NFE2"
TCGA.CK.5914.01A	12	54686146	54764010	13	0.2216	NEUTRAL	NA	4	"COPZ1,GPR84,NFE2,ZNF385A"
TCGA.AA.A010.01A	12	54730948	54744204	8	-0.4578	NEUTRAL	NA	1	COPZ1
TCGA.AA.A01Q.01A	12	54730948	54778160	15	-0.2488	NEUTRAL	NA	3	"COPZ1,GPR84,ZNF385A"
TCGA.AA.A00D.01A	12	54730948	54894292	44	0.1356	NEUTRAL	NA	6	"COPZ1,GPR84,GTSF1,ITGA5,NCKAP1L,ZNF385A"
TCGA.AG.A00C.01A	12	54730948	54977974	83	0.203	NEUTRAL	NA	8	"COPZ1,GPR84,GTSF1,ITGA5,NCKAP1L,PDE1B,PPP1R1A,ZNF385A"
TCGA.AA.A00F.01A	12	54730948	55024610	81	0.1094	NEUTRAL	NA	8	"COPZ1,GPR84,GTSF1,ITGA5,NCKAP1L,PDE1B,PPP1R1A,ZNF385A"
TCGA.AG.3611.01A	12	54744204	56143286	141	-0.026	NEUTRAL	NA	34	"BLOC1S1,CD63,COPZ1,DCD,GDF11,GPR84,GTSF1,ITGA5,ITGA7,LACRT,METTL7B,MUCL1,NCKAP1L,NEUROD4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PDE1B,PPP1R1A,RDH5,TESPA1,ZNF385A"
TCGA.AG.4009.01A	12	54756394	54769590	6	-0.4798	NEUTRAL	NA	2	"GPR84,ZNF385A"
TCGA.CK.5914.01A	12	54764700	54902141	37	-0.2993	NEUTRAL	NA	4	"GTSF1,ITGA5,NCKAP1L,ZNF385A"
TCGA.AG.3906.01A	12	54790017	54962931	56	0.2347	NEUTRAL	NA	4	"GTSF1,ITGA5,NCKAP1L,PDE1B"
TCGA.AG.4009.01A	12	54790017	54963282	57	-0.1084	NEUTRAL	NA	4	"GTSF1,ITGA5,NCKAP1L,PDE1B"
TCGA.AG.3891.01A	12	54792332	55248820	81	0.2224	NEUTRAL	NA	8	"DCD,GTSF1,ITGA5,LACRT,MUCL1,NCKAP1L,PDE1B,PPP1R1A"
TCGA.AA.A01C.01A	12	54796702	55025480	66	-0.2306	NEUTRAL	NA	6	"GTSF1,ITGA5,LACRT,NCKAP1L,PDE1B,PPP1R1A"
TCGA.AA.A010.01A	12	54798449	56109852	127	-0.2217	NEUTRAL	NA	28	"BLOC1S1,DCD,GTSF1,ITGA5,ITGA7,LACRT,METTL7B,MUCL1,NCKAP1L,NEUROD4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PDE1B,PPP1R1A,TESPA1"
TCGA.A6.6654	12	54802871	133777644	25058	0.1353	NEUTRAL	NA	534	Too-Many
TCGA.AA.A01Q.01A	12	54802966	54894292	13	0.0126	NEUTRAL	NA	3	"GTSF1,ITGA5,NCKAP1L"
TCGA.AG.3909.01A	12	54812728	54902141	13	0.0741	NEUTRAL	NA	3	"GTSF1,ITGA5,NCKAP1L"
TCGA.AG.A01W.01A	12	54840591	54849856	8	-0.2945	NEUTRAL	NA	1	GTSF1
TCGA.AG.A01W.01A	12	54850142	54869366	19	0.119	NEUTRAL	NA	1	GTSF1
TCGA.AA.3967.01A	12	54854112	54960707	35	-0.0831	NEUTRAL	NA	3	"GTSF1,NCKAP1L,PDE1B"
TCGA.AA.3509.01A	12	54864923	55040823	56	-0.1073	NEUTRAL	NA	6	"DCD,GTSF1,LACRT,NCKAP1L,PDE1B,PPP1R1A"
TCGA.AG.A01W.01A	12	54890298	54917222	14	-0.4702	NEUTRAL	NA	1	NCKAP1L
TCGA.AA.A00D.01A	12	54901564	56030649	72	-0.1975	NEUTRAL	NA	22	"DCD,LACRT,MUCL1,NCKAP1L,NEUROD4,OR10A7,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PDE1B,PPP1R1A,TESPA1"
TCGA.AA.A01Q.01A	12	54925897	54929896	3	0.0541	NEUTRAL	NA	1	NCKAP1L
TCGA.AG.3909.01A	12	54925897	54976942	23	0.0172	NEUTRAL	NA	3	"NCKAP1L,PDE1B,PPP1R1A"
TCGA.CK.5914.01A	12	54925897	54976942	23	-0.2365	NEUTRAL	NA	3	"NCKAP1L,PDE1B,PPP1R1A"
TCGA.AG.A01W.01A	12	54927494	54932795	6	-0.2766	NEUTRAL	NA	1	NCKAP1L
TCGA.AA.A01Q.01A	12	54930691	54970323	14	-0.3685	NEUTRAL	NA	2	"NCKAP1L,PDE1B"
TCGA.AG.A01W.01A	12	54933313	54937823	9	0.2866	NEUTRAL	NA	1	NCKAP1L
TCGA.AG.A01W.01A	12	54947122	55297395	121	-0.3953	NEUTRAL	NA	5	"DCD,LACRT,MUCL1,PDE1B,PPP1R1A"
TCGA.AA.3967.01A	12	54962931	58110183	758	0.2885	NEUTRAL	NA	100	"ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CNPY2,COQ10A,CS,DCD,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LACRT,LRP1,MARS,MBD6,METTL7B,MIP,MMP19,MUCL1,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NEUROD4,NXPH4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,ORMDL2,OS9,PA2G4,PAN2,PDE1B,PIP4K2C,PMEL,PPP1R1A,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TESPA1,TIMELESS,TMEM194A,WIBG,ZBTB39,ZC3H10"
TCGA.AG.4009.01A	12	54963976	54977974	14	-0.4105	NEUTRAL	NA	2	"PDE1B,PPP1R1A"
TCGA.AG.A01L.01A	12	54966335	56212772	101	0.0299	NEUTRAL	NA	30	"BLOC1S1,CD63,DCD,GDF11,ITGA7,LACRT,METTL7B,MUCL1,NEUROD4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,ORMDL2,PDE1B,PPP1R1A,RDH5,SARNP,TESPA1"
TCGA.AA.A01Q.01A	12	54970977	56075500	38	0.164	NEUTRAL	NA	23	"DCD,LACRT,METTL7B,MUCL1,NEUROD4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PDE1B,PPP1R1A,TESPA1"
TCGA.AA.3844	12	54977870	56004900	321	0.2815	NEUTRAL	NA	20	"DCD,LACRT,MUCL1,NEUROD4,OR10A7,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,PPP1R1A,TESPA1"
TCGA.AG.4009.01A	12	55024610	55758943	34	0.0514	NEUTRAL	NA	12	"DCD,LACRT,MUCL1,NEUROD4,OR10A7,OR6C1,OR6C3,OR6C6,OR6C74,OR6C75,OR9K2,TESPA1"
TCGA.AG.A00C.01A	12	55024610	55758943	34	-0.2635	NEUTRAL	NA	12	"DCD,LACRT,MUCL1,NEUROD4,OR10A7,OR6C1,OR6C3,OR6C6,OR6C74,OR6C75,OR9K2,TESPA1"
TCGA.AA.A00F.01A	12	55025480	55758943	26	-0.2039	NEUTRAL	NA	12	"DCD,LACRT,MUCL1,NEUROD4,OR10A7,OR6C1,OR6C3,OR6C6,OR6C74,OR6C75,OR9K2,TESPA1"
TCGA.AG.3906.01A	12	55025978	55039341	6	0.3056	NEUTRAL	NA	2	"DCD,LACRT"
TCGA.AA.A00L.01A	12	55038903	56030649	29	-0.3118	NEUTRAL	NA	18	"DCD,MUCL1,NEUROD4,OR10A7,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AG.3906.01A	12	55040823	55251900	6	-0.0131	NEUTRAL	NA	2	"DCD,MUCL1"
TCGA.A6.5661	12	55054600	92878335	10841	0.2141	NEUTRAL	NA	221	Too-Many
TCGA.AA.3982	12	55080861	56022982	265	-0.2078	NEUTRAL	NA	17	"MUCL1,NEUROD4,OR10A7,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AA.3941	12	55221358	56004900	232	-0.1582	NEUTRAL	NA	17	"MUCL1,NEUROD4,OR10A7,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AG.3891.01A	12	55250512	55886117	28	-0.185	NEUTRAL	NA	14	"MUCL1,NEUROD4,OR10A7,OR6C1,OR6C2,OR6C3,OR6C6,OR6C65,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AA.3930.01A	12	55250512	55944970	29	-0.137	NEUTRAL	NA	15	"MUCL1,NEUROD4,OR10A7,OR6C1,OR6C2,OR6C3,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AG.A01W.01A	12	55316139	55319985	4	0.2829	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	55322459	55351764	11	-0.3556	NEUTRAL	NA	1	TESPA1
TCGA.AG.3906.01A	12	55354901	55758943	21	-0.3099	NEUTRAL	NA	9	"NEUROD4,OR10A7,OR6C1,OR6C3,OR6C6,OR6C74,OR6C75,OR9K2,TESPA1"
TCGA.AA.3696	12	55385394	55397735	13	0.0351	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	55396746	55683942	32	0.0763	NEUTRAL	NA	4	"NEUROD4,OR10A7,OR6C74,OR9K2"
TCGA.AA.3811	12	55411715	56004900	146	-0.2461	NEUTRAL	NA	15	"NEUROD4,OR10A7,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2"
TCGA.CK.5914.01A	12	55420207	56094634	37	-0.0156	NEUTRAL	NA	18	"ITGA7,METTL7B,NEUROD4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2"
TCGA.AG.3909.01A	12	55422065	56030649	17	0.1695	NEUTRAL	NA	15	"NEUROD4,OR10A7,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2"
TCGA.D5.6929	12	55539158	133777644	24802	-0.0272	NEUTRAL	NA	523	Too-Many
TCGA.AG.A01W.01A	12	55692377	55717869	13	-0.3889	NEUTRAL	NA	1	OR6C1
TCGA.AG.A01W.01A	12	55718436	55743158	14	0.0182	NEUTRAL	NA	1	OR6C3
TCGA.AG.A01W.01A	12	55771146	55788167	20	-0.1888	NEUTRAL	NA	0	None
TCGA.AG.3906.01A	12	55794302	56082580	12	-0.0316	NEUTRAL	NA	10	"ITGA7,METTL7B,OR10P1,OR2AP1,OR6C2,OR6C4,OR6C65,OR6C68,OR6C70,OR6C76"
TCGA.AA.A00N.01A	12	55794302	56092446	22	-0.0392	NEUTRAL	NA	10	"ITGA7,METTL7B,OR10P1,OR2AP1,OR6C2,OR6C4,OR6C65,OR6C68,OR6C70,OR6C76"
TCGA.AG.A00C.01A	12	55794302	56420535	114	0.1772	NEUTRAL	NA	25	"BLOC1S1,CD63,CDK2,DGKA,DNAJC14,GDF11,IKZF4,ITGA7,METTL7B,MMP19,OR10P1,OR2AP1,OR6C2,OR6C4,OR6C65,OR6C68,OR6C70,OR6C76,ORMDL2,PMEL,RAB5B,RDH5,SARNP,SUOX,WIBG"
TCGA.AA.A00F.01A	12	55794302	56717561	237	0.1646	NEUTRAL	NA	42	"ANKRD52,BLOC1S1,CD63,CDK2,CNPY2,COQ10A,CS,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,IKZF4,ITGA7,METTL7B,MMP19,MYL6,MYL6B,NABP2,OR10P1,OR2AP1,OR6C2,OR6C4,OR6C65,OR6C68,OR6C70,OR6C76,ORMDL2,PA2G4,PAN2,PMEL,RAB5B,RDH5,RNF41,RPL41,RPS26,SARNP,SLC39A5,SMARCC2,SUOX,WIBG,ZC3H10"
TCGA.AG.A01W.01A	12	55870837	55886486	23	0.0478	NEUTRAL	NA	1	OR6C68
TCGA.AG.A01W.01A	12	55888037	55924901	21	-0.1917	NEUTRAL	NA	0	None
TCGA.CM.6677	12	55933640	58208163	394	0.213	NEUTRAL	NA	90	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,AVIL,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CDK4,CNPY2,COQ10A,CS,CYP27B1,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,METTL7B,MIP,MMP19,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,OR10P1,OR2AP1,OR6C4,ORMDL2,OS9,PA2G4,PAN2,PIP4K2C,PMEL,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,TSFM,TSPAN31,WIBG,ZBTB39,ZC3H10"
TCGA.AG.A01W.01A	12	55935981	56152527	35	-0.3299	NEUTRAL	NA	10	"BLOC1S1,CD63,GDF11,ITGA7,METTL7B,OR10P1,OR2AP1,OR6C4,RDH5,SARNP"
TCGA.AG.3891.01A	12	55944970	56511186	152	0.2718	NEUTRAL	NA	24	"BLOC1S1,CD63,CDK2,DGKA,DNAJC14,ERBB3,GDF11,IKZF4,ITGA7,METTL7B,MMP19,OR10P1,OR2AP1,OR6C4,ORMDL2,PA2G4,PMEL,RAB5B,RDH5,RPL41,RPS26,SARNP,SUOX,WIBG"
TCGA.AA.3811	12	56011100	58369932	406	0.2975	NEUTRAL	NA	90	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,AVIL,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CDK4,CNPY2,COQ10A,CS,CTDSP2,CYP27B1,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,METTL7B,MIP,MMP19,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,OR10P1,ORMDL2,OS9,PA2G4,PAN2,PIP4K2C,PMEL,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,TSFM,TSPAN31,WIBG,XRCC6BP1,ZBTB39,ZC3H10"
TCGA.AA.3982	12	56026711	58350630	399	0.3286	NEUTRAL	NA	90	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,AVIL,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CDK4,CNPY2,COQ10A,CS,CTDSP2,CYP27B1,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,METTL7B,MIP,MMP19,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,OR10P1,ORMDL2,OS9,PA2G4,PAN2,PIP4K2C,PMEL,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,TSFM,TSPAN31,WIBG,XRCC6BP1,ZBTB39,ZC3H10"
TCGA.AA.3930.01A	12	56030649	56583087	209	0.2219	NEUTRAL	NA	27	"BLOC1S1,CD63,CDK2,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,IKZF4,ITGA7,METTL7B,MMP19,MYL6,MYL6B,OR10P1,ORMDL2,PA2G4,PMEL,RAB5B,RDH5,RPL41,RPS26,SARNP,SMARCC2,SUOX,WIBG,ZC3H10"
TCGA.AA.3509.01A	12	56030649	57058496	389	-0.0638	NEUTRAL	NA	46	"ANKRD52,APOF,ATP5B,BAZ2A,BLOC1S1,CD63,CDK2,CNPY2,COQ10A,CS,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,GLS2,IKZF4,IL23A,ITGA7,METTL7B,MIP,MMP19,MYL6,MYL6B,NABP2,OR10P1,ORMDL2,PA2G4,PAN2,PMEL,PTGES3,RAB5B,RBMS2,RDH5,RNF41,RPL41,RPS26,SARNP,SLC39A5,SMARCC2,SPRYD4,STAT2,SUOX,TIMELESS,WIBG,ZC3H10"
TCGA.AZ.4684.01A	12	56030649	57058496	389	-0.0186	NEUTRAL	NA	46	"ANKRD52,APOF,ATP5B,BAZ2A,BLOC1S1,CD63,CDK2,CNPY2,COQ10A,CS,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,GLS2,IKZF4,IL23A,ITGA7,METTL7B,MIP,MMP19,MYL6,MYL6B,NABP2,OR10P1,ORMDL2,PA2G4,PAN2,PMEL,PTGES3,RAB5B,RBMS2,RDH5,RNF41,RPL41,RPS26,SARNP,SLC39A5,SMARCC2,SPRYD4,STAT2,SUOX,TIMELESS,WIBG,ZC3H10"
TCGA.AG.4009.01A	12	56075500	56110667	23	0.1216	NEUTRAL	NA	3	"BLOC1S1,ITGA7,METTL7B"
TCGA.AA.A00D.01A	12	56075500	56553708	165	0.1463	NEUTRAL	NA	25	"BLOC1S1,CD63,CDK2,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,IKZF4,ITGA7,METTL7B,MMP19,MYL6,MYL6B,ORMDL2,PA2G4,PMEL,RAB5B,RDH5,RPL41,RPS26,SARNP,SUOX,WIBG,ZC3H10"
TCGA.AA.A00L.01A	12	56075500	62981804	771	0.0834	NEUTRAL	NA	94	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,AVIL,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CDK4,CNPY2,COQ10A,CS,CTDSP2,CYP27B1,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,FAM19A2,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LRIG3,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,METTL7B,MIP,MMP19,MON2,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,ORMDL2,OS9,PA2G4,PAN2,PIP4K2C,PMEL,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC16A7,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,TSFM,TSPAN31,USP15,WIBG,XRCC6BP1,ZBTB39,ZC3H10"
TCGA.AA.A01Q.01A	12	56077549	56122004	33	-0.4259	NEUTRAL	NA	5	"BLOC1S1,CD63,ITGA7,METTL7B,RDH5"
TCGA.AA.A01C.01A	12	56081718	58194870	741	-0.3224	NEUTRAL	NA	86	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,AVIL,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CDK4,CNPY2,COQ10A,CS,CYP27B1,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,MIP,MMP19,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,ORMDL2,OS9,PA2G4,PAN2,PIP4K2C,PMEL,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,TSFM,TSPAN31,WIBG,ZBTB39,ZC3H10"
TCGA.AG.3906.01A	12	56086591	56120927	28	0.2516	NEUTRAL	NA	4	"BLOC1S1,CD63,ITGA7,RDH5"
TCGA.AA.A01D.01A	12	56090643	56680304	233	-0.3081	NEUTRAL	NA	31	"ANKRD52,BLOC1S1,CD63,CDK2,COQ10A,CS,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,IKZF4,ITGA7,MMP19,MYL6,MYL6B,NABP2,ORMDL2,PA2G4,PMEL,RAB5B,RDH5,RNF41,RPL41,RPS26,SARNP,SLC39A5,SMARCC2,SUOX,WIBG,ZC3H10"
TCGA.A6.3808.01A	12	56110667	57032869	356	-0.222	NEUTRAL	NA	42	"ANKRD52,APOF,ATP5B,BAZ2A,BLOC1S1,CD63,CDK2,CNPY2,COQ10A,CS,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,GLS2,IKZF4,IL23A,MIP,MMP19,MYL6,MYL6B,NABP2,ORMDL2,PA2G4,PAN2,PMEL,RAB5B,RBMS2,RDH5,RNF41,RPL41,RPS26,SARNP,SLC39A5,SMARCC2,SPRYD4,STAT2,SUOX,TIMELESS,WIBG,ZC3H10"
TCGA.G5.6641	12	56115882	68340821	3426	0.2555	NEUTRAL	NA	115	Too-Many
TCGA.AA.A01Q.01A	12	56137092	56320799	33	0.3176	NEUTRAL	NA	6	"DNAJC14,GDF11,MMP19,ORMDL2,SARNP,WIBG"
TCGA.AG.4009.01A	12	56137092	56572188	158	0.092	NEUTRAL	NA	21	"CDK2,DGKA,DNAJC14,ERBB3,ESYT1,GDF11,IKZF4,MMP19,MYL6,MYL6B,ORMDL2,PA2G4,PMEL,RAB5B,RPL41,RPS26,SARNP,SMARCC2,SUOX,WIBG,ZC3H10"
TCGA.CK.5914.01A	12	56142379	56215719	17	0.0429	NEUTRAL	NA	4	"DNAJC14,GDF11,ORMDL2,SARNP"
TCGA.AG.A01W.01A	12	56153607	56157177	8	0.2141	NEUTRAL	NA	1	SARNP
TCGA.AG.A01W.01A	12	56157459	56184214	11	-0.2495	NEUTRAL	NA	1	SARNP
TCGA.AA.A010.01A	12	56182792	56194562	7	-0.2482	NEUTRAL	NA	1	SARNP
TCGA.AA.A00N.01A	12	56182792	56321428	34	0.0339	NEUTRAL	NA	5	"DNAJC14,MMP19,ORMDL2,SARNP,WIBG"
TCGA.AG.3906.01A	12	56182792	56437819	78	0.1434	NEUTRAL	NA	12	"CDK2,DGKA,DNAJC14,IKZF4,MMP19,ORMDL2,PMEL,RAB5B,RPS26,SARNP,SUOX,WIBG"
TCGA.AG.3909.01A	12	56184275	56215719	12	0.2558	NEUTRAL	NA	3	"DNAJC14,ORMDL2,SARNP"
TCGA.AG.A01W.01A	12	56191697	56206575	12	0.2633	NEUTRAL	NA	1	SARNP
TCGA.AG.A01W.01A	12	56207541	56291904	55	-0.3761	NEUTRAL	NA	4	"DNAJC14,MMP19,ORMDL2,SARNP"
TCGA.AG.A015.01A	12	56211378	56236475	18	-0.2393	NEUTRAL	NA	4	"DNAJC14,MMP19,ORMDL2,SARNP"
TCGA.AG.3611.01A	12	56212772	75905245	1172	0.0523	NEUTRAL	NA	149	Too-Many
TCGA.AG.A01L.01A	12	56213085	56236475	16	-0.3154	NEUTRAL	NA	3	"DNAJC14,MMP19,ORMDL2"
TCGA.AG.A023.01A	12	56215719	56537344	117	-0.2168	NEUTRAL	NA	15	"CDK2,DGKA,DNAJC14,ERBB3,ESYT1,IKZF4,MMP19,PA2G4,PMEL,RAB5B,RPL41,RPS26,SUOX,WIBG,ZC3H10"
TCGA.AG.3909.01A	12	56216128	56221895	5	-0.2033	NEUTRAL	NA	1	DNAJC14
TCGA.AG.3909.01A	12	56230888	56236083	7	0.2578	NEUTRAL	NA	1	MMP19
TCGA.CK.5914.01A	12	56232342	56321428	10	0.3412	NEUTRAL	NA	2	"MMP19,WIBG"
TCGA.AG.A01W.01A	12	56292930	56296793	9	0.2775	NEUTRAL	NA	1	WIBG
TCGA.AG.A01L.01A	12	56295648	56347411	20	0.0287	NEUTRAL	NA	2	"DGKA,WIBG"
TCGA.AG.A016.01A	12	56297116	56331145	4	0.1288	NEUTRAL	NA	2	"DGKA,WIBG"
TCGA.AG.A01W.01A	12	56300231	56428525	45	-0.2651	NEUTRAL	NA	7	"CDK2,DGKA,IKZF4,PMEL,RAB5B,SUOX,WIBG"
TCGA.AA.A01Q.01A	12	56330231	56397380	40	-0.5055	NEUTRAL	NA	5	"CDK2,DGKA,PMEL,RAB5B,SUOX"
TCGA.AG.A016.01A	12	56331702	56346511	13	-0.179	NEUTRAL	NA	1	DGKA
TCGA.AG.3909.01A	12	56332929	56363207	24	-0.1867	NEUTRAL	NA	3	"CDK2,DGKA,PMEL"
TCGA.AA.A00N.01A	12	56332929	56365263	26	-0.2836	NEUTRAL	NA	3	"CDK2,DGKA,PMEL"
TCGA.AA.A01K.01A	12	56333831	56708585	181	-0.26	NEUTRAL	NA	22	"ANKRD52,CDK2,CNPY2,COQ10A,CS,DGKA,ERBB3,ESYT1,IKZF4,MYL6,MYL6B,NABP2,PA2G4,PMEL,RAB5B,RNF41,RPL41,RPS26,SLC39A5,SMARCC2,SUOX,ZC3H10"
TCGA.AA.A02K.01A	12	56346477	56355052	9	-0.2862	NEUTRAL	NA	2	"DGKA,PMEL"
TCGA.AG.A016.01A	12	56347118	56359670	10	0.1651	NEUTRAL	NA	2	"DGKA,PMEL"
TCGA.AG.A01L.01A	12	56359670	56482295	31	-0.0695	NEUTRAL	NA	7	"CDK2,ERBB3,IKZF4,PMEL,RAB5B,RPS26,SUOX"
TCGA.AG.A015.01A	12	56359670	56563864	91	0.1016	NEUTRAL	NA	14	"CDK2,ERBB3,ESYT1,IKZF4,MYL6,MYL6B,PA2G4,PMEL,RAB5B,RPL41,RPS26,SMARCC2,SUOX,ZC3H10"
TCGA.AA.A02K.01A	12	56359671	57595259	435	0.0862	NEUTRAL	NA	46	"ANKRD52,APOF,ATP5B,BAZ2A,CDK2,CNPY2,COQ10A,CS,ERBB3,ESYT1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,LRP1,MIP,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,PA2G4,PAN2,PMEL,PRIM1,PTGES3,RAB5B,RBMS2,RDH16,RNF41,RPL41,RPS26,SDR9C7,SLC39A5,SMARCC2,SPRYD4,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,ZBTB39,ZC3H10"
TCGA.AG.A016.01A	12	56360746	56385829	11	-0.4797	NEUTRAL	NA	2	"CDK2,RAB5B"
TCGA.AG.A016.01A	12	56395940	56418798	5	0.1846	NEUTRAL	NA	2	"IKZF4,SUOX"
TCGA.AG.A008.01A	12	56415220	56418798	3	-0.4273	NEUTRAL	NA	1	IKZF4
TCGA.AA.A00N.01A	12	56415220	56474027	13	0.2738	NEUTRAL	NA	3	"ERBB3,IKZF4,RPS26"
TCGA.CK.5914.01A	12	56418798	56474027	11	0.0942	NEUTRAL	NA	3	"ERBB3,IKZF4,RPS26"
TCGA.AA.A024.01A	12	56420535	56426922	4	-0.4001	NEUTRAL	NA	1	IKZF4
TCGA.AG.A016.01A	12	56420535	56563261	74	-0.3485	NEUTRAL	NA	10	"ERBB3,ESYT1,IKZF4,MYL6,MYL6B,PA2G4,RPL41,RPS26,SMARCC2,ZC3H10"
TCGA.AG.A008.01A	12	56420535	58120805	596	0.1647	NEUTRAL	NA	63	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,B4GALNT1,BAZ2A,CNPY2,COQ10A,CS,DCTN2,DDIT3,DTX3,ERBB3,ESYT1,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,KIF5A,LRP1,MARS,MBD6,MIP,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,OS9,PA2G4,PAN2,PIP4K2C,PRIM1,PTGES3,R3HDM2,RBMS2,RDH16,RNF41,RPL41,RPS26,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,TAC3,TIMELESS,TMEM194A,ZBTB39,ZC3H10"
TCGA.AG.A00C.01A	12	56421513	56437819	8	-0.179	NEUTRAL	NA	2	"IKZF4,RPS26"
TCGA.AA.A024.01A	12	56428313	56482295	10	0.1815	NEUTRAL	NA	3	"ERBB3,IKZF4,RPS26"
TCGA.AG.A01W.01A	12	56429183	56454661	18	0.2381	NEUTRAL	NA	2	"IKZF4,RPS26"
TCGA.AA.A01Q.01A	12	56436160	56567438	72	-0.3765	NEUTRAL	NA	9	"ERBB3,ESYT1,MYL6,MYL6B,PA2G4,RPL41,RPS26,SMARCC2,ZC3H10"
TCGA.AG.A01W.01A	12	56460250	56477881	8	-0.3945	NEUTRAL	NA	1	ERBB3
TCGA.AA.A010.01A	12	56477497	56490250	14	-0.3702	NEUTRAL	NA	1	ERBB3
TCGA.AG.A00C.01A	12	56477497	56525482	37	0.3101	NEUTRAL	NA	5	"ERBB3,ESYT1,PA2G4,RPL41,ZC3H10"
TCGA.AG.A01W.01A	12	56479805	56490820	10	0.2128	NEUTRAL	NA	1	ERBB3
TCGA.AG.3906.01A	12	56486774	56506542	24	0.2644	NEUTRAL	NA	2	"ERBB3,PA2G4"
TCGA.AG.A01L.01A	12	56487089	57011137	236	-0.0641	NEUTRAL	NA	25	"ANKRD52,APOF,BAZ2A,CNPY2,COQ10A,CS,ERBB3,ESYT1,GLS2,IL23A,MIP,MYL6,MYL6B,NABP2,PA2G4,PAN2,RBMS2,RNF41,RPL41,SLC39A5,SMARCC2,SPRYD4,STAT2,TIMELESS,ZC3H10"
TCGA.AA.A024.01A	12	56488980	56815471	171	0.2142	NEUTRAL	NA	20	"ANKRD52,APOF,CNPY2,COQ10A,CS,ERBB3,ESYT1,IL23A,MYL6,MYL6B,NABP2,PA2G4,PAN2,RNF41,RPL41,SLC39A5,SMARCC2,STAT2,TIMELESS,ZC3H10"
TCGA.AA.A010.01A	12	56490817	56548858	38	0.223	NEUTRAL	NA	6	"ERBB3,ESYT1,MYL6B,PA2G4,RPL41,ZC3H10"
TCGA.AG.A01W.01A	12	56493240	56495962	3	-0.5115	NEUTRAL	NA	1	ERBB3
TCGA.AG.A01W.01A	12	56503601	57552582	16	0.0855	NEUTRAL	NA	39	"ANKRD52,APOF,ATP5B,BAZ2A,CNPY2,COQ10A,CS,ESYT1,GLS2,GPR182,HSD17B6,IL23A,LRP1,MIP,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,PA2G4,PAN2,PRIM1,PTGES3,RBMS2,RDH16,RNF41,RPL41,SDR9C7,SLC39A5,SMARCC2,SPRYD4,STAT2,STAT6,TAC3,TIMELESS,TMEM194A,ZBTB39,ZC3H10"
TCGA.AG.3906.01A	12	56510487	56525482	8	-0.2367	NEUTRAL	NA	3	"ESYT1,RPL41,ZC3H10"
TCGA.AG.3891.01A	12	56514327	56525482	5	-0.1249	NEUTRAL	NA	2	"ESYT1,ZC3H10"
TCGA.AG.3909.01A	12	56522083	56637528	68	-0.147	NEUTRAL	NA	8	"ANKRD52,ESYT1,MYL6,MYL6B,NABP2,RNF41,SLC39A5,SMARCC2"
TCGA.AG.A00C.01A	12	56525983	56565037	29	-0.1566	NEUTRAL	NA	4	"ESYT1,MYL6,MYL6B,SMARCC2"
TCGA.AG.3891.01A	12	56525983	56567438	33	0.3241	NEUTRAL	NA	4	"ESYT1,MYL6,MYL6B,SMARCC2"
TCGA.AG.3906.01A	12	56525983	56568386	34	0.2795	NEUTRAL	NA	4	"ESYT1,MYL6,MYL6B,SMARCC2"
TCGA.CK.5914.01A	12	56530487	56567438	29	-0.3971	NEUTRAL	NA	4	"ESYT1,MYL6,MYL6B,SMARCC2"
TCGA.AA.A010.01A	12	56549161	56559115	11	-0.2963	NEUTRAL	NA	3	"MYL6,MYL6B,SMARCC2"
TCGA.AG.A023.01A	12	56552108	133778682	4823	-0.1056	NEUTRAL	NA	485	Too-Many
TCGA.AA.A00D.01A	12	56554323	56566711	12	-0.3037	NEUTRAL	NA	2	"MYL6,SMARCC2"
TCGA.AG.A016.01A	12	56563864	56575734	13	0.0168	NEUTRAL	NA	1	SMARCC2
TCGA.AG.A00C.01A	12	56565423	56704978	72	0.3447	NEUTRAL	NA	8	"ANKRD52,CNPY2,COQ10A,CS,NABP2,RNF41,SLC39A5,SMARCC2"
TCGA.AA.A00D.01A	12	56567438	56722011	62	0.1887	NEUTRAL	NA	9	"ANKRD52,CNPY2,COQ10A,CS,NABP2,PAN2,RNF41,SLC39A5,SMARCC2"
TCGA.CK.5914.01A	12	56583087	56636914	19	-0.0855	NEUTRAL	NA	5	"ANKRD52,NABP2,RNF41,SLC39A5,SMARCC2"
TCGA.AA.A00N.01A	12	56583087	56645738	29	-0.3984	NEUTRAL	NA	5	"ANKRD52,NABP2,RNF41,SLC39A5,SMARCC2"
TCGA.AA.A01Q.01A	12	56583087	56718756	49	-0.1655	NEUTRAL	NA	9	"ANKRD52,CNPY2,COQ10A,CS,NABP2,PAN2,RNF41,SLC39A5,SMARCC2"
TCGA.AG.A015.01A	12	56600182	56604044	4	-0.4486	NEUTRAL	NA	1	RNF41
TCGA.AG.4009.01A	12	56600182	56641827	24	0.1251	NEUTRAL	NA	4	"ANKRD52,NABP2,RNF41,SLC39A5"
TCGA.AG.3906.01A	12	56604044	57108086	176	0.2225	NEUTRAL	NA	20	"ANKRD52,APOF,ATP5B,BAZ2A,CNPY2,COQ10A,CS,GLS2,IL23A,MIP,NABP2,NACA,PAN2,PTGES3,RBMS2,RNF41,SLC39A5,SPRYD4,STAT2,TIMELESS"
TCGA.AG.A015.01A	12	56607700	56630666	12	0.2438	NEUTRAL	NA	3	"NABP2,RNF41,SLC39A5"
TCGA.AA.A010.01A	12	56618603	56642506	22	-0.0689	NEUTRAL	NA	3	"ANKRD52,NABP2,SLC39A5"
TCGA.AA.3930.01A	12	56618603	57108086	181	0.2857	NEUTRAL	NA	19	"ANKRD52,APOF,ATP5B,BAZ2A,CNPY2,COQ10A,CS,GLS2,IL23A,MIP,NABP2,NACA,PAN2,PTGES3,RBMS2,SLC39A5,SPRYD4,STAT2,TIMELESS"
TCGA.AG.A016.01A	12	56626446	56630666	6	-0.1493	NEUTRAL	NA	1	SLC39A5
TCGA.AG.A015.01A	12	56631320	56642506	11	-0.2069	NEUTRAL	NA	2	"ANKRD52,SLC39A5"
TCGA.AG.A016.01A	12	56641226	56704257	28	0.0136	NEUTRAL	NA	4	"ANKRD52,CNPY2,COQ10A,CS"
TCGA.AG.A00H.01A	12	56641226	57066460	152	-0.2822	NEUTRAL	NA	16	"ANKRD52,APOF,ATP5B,BAZ2A,CNPY2,COQ10A,CS,GLS2,IL23A,MIP,PAN2,PTGES3,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.AG.A015.01A	12	56645738	56716859	34	0.3021	NEUTRAL	NA	5	"ANKRD52,CNPY2,COQ10A,CS,PAN2"
TCGA.AG.3891.01A	12	56649519	56661538	5	-0.0393	NEUTRAL	NA	2	"ANKRD52,COQ10A"
TCGA.AG.3891.01A	12	56662793	57108086	143	0.3559	NEUTRAL	NA	16	"APOF,ATP5B,BAZ2A,CNPY2,COQ10A,CS,GLS2,IL23A,MIP,NACA,PAN2,PTGES3,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.AG.4009.01A	12	56667319	56679650	7	-0.3449	NEUTRAL	NA	1	CS
TCGA.AG.4009.01A	12	56680304	57011137	112	0.2392	NEUTRAL	NA	12	"APOF,BAZ2A,CNPY2,CS,GLS2,IL23A,MIP,PAN2,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.AG.A016.01A	12	56704693	56749866	38	-0.5145	NEUTRAL	NA	4	"CNPY2,IL23A,PAN2,STAT2"
TCGA.AG.A00C.01A	12	56708585	57032058	109	-0.0643	NEUTRAL	NA	12	"APOF,ATP5B,BAZ2A,CNPY2,GLS2,IL23A,MIP,PAN2,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.A6.3810.01A	12	56708585	133778682	5322	-0.2993	NEUTRAL	NA	477	Too-Many
TCGA.AA.A01D.01A	12	56713354	133778682	4608	-0.1186	NEUTRAL	NA	476	Too-Many
TCGA.AA.A01K.01A	12	56715807	57897969	321	-0.0848	NEUTRAL	NA	35	"APOF,ARHGAP9,ATP5B,BAZ2A,GLI1,GLS2,GPR182,HSD17B6,IL23A,INHBC,INHBE,LRP1,MARS,MIP,MYO1A,NAB2,NACA,NDUFA4L2,NXPH4,PAN2,PRIM1,PTGES3,R3HDM2,RBMS2,RDH16,SDR9C7,SHMT2,SPRYD4,STAC3,STAT2,STAT6,TAC3,TIMELESS,TMEM194A,ZBTB39"
TCGA.AG.A015.01A	12	56717561	56721727	8	-0.2742	NEUTRAL	NA	1	PAN2
TCGA.AA.A00F.01A	12	56718127	56823851	40	-0.1473	NEUTRAL	NA	5	"APOF,IL23A,PAN2,STAT2,TIMELESS"
TCGA.AG.3909.01A	12	56718756	56722011	7	0.3202	NEUTRAL	NA	1	PAN2
TCGA.AA.A01Q.01A	12	56719072	57008801	83	0.2089	NEUTRAL	NA	10	"APOF,BAZ2A,GLS2,IL23A,MIP,PAN2,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.CK.5914.01A	12	56720046	56827126	43	0.1047	NEUTRAL	NA	5	"APOF,IL23A,PAN2,STAT2,TIMELESS"
TCGA.AG.A015.01A	12	56722011	57066460	106	0.1753	NEUTRAL	NA	12	"APOF,ATP5B,BAZ2A,GLS2,IL23A,MIP,PAN2,PTGES3,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.AA.A00D.01A	12	56726546	56827506	38	-0.1739	NEUTRAL	NA	5	"APOF,IL23A,PAN2,STAT2,TIMELESS"
TCGA.AG.A016.01A	12	56750193	57064004	83	-0.1866	NEUTRAL	NA	10	"APOF,ATP5B,BAZ2A,GLS2,MIP,PTGES3,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.AG.3909.01A	12	56756430	56827506	18	0.2376	NEUTRAL	NA	2	"APOF,TIMELESS"
TCGA.AA.A024.01A	12	56821983	57038515	70	0.1175	NEUTRAL	NA	7	"ATP5B,BAZ2A,GLS2,MIP,RBMS2,SPRYD4,TIMELESS"
TCGA.AA.A00F.01A	12	56824609	56915777	26	0.1944	NEUTRAL	NA	5	"GLS2,MIP,RBMS2,SPRYD4,TIMELESS"
TCGA.AA.A00D.01A	12	56845015	56915777	20	0.371	NEUTRAL	NA	4	"GLS2,MIP,RBMS2,SPRYD4"
TCGA.CK.5914.01A	12	56881703	57029871	35	0.1722	NEUTRAL	NA	3	"BAZ2A,GLS2,RBMS2"
TCGA.AA.A00D.01A	12	56956151	56982669	10	-0.2311	NEUTRAL	NA	1	RBMS2
TCGA.AA.A00F.01A	12	56956151	56995403	12	-0.164	NEUTRAL	NA	2	"BAZ2A,RBMS2"
TCGA.AA.A00D.01A	12	56994423	57180862	30	0.2967	NEUTRAL	NA	6	"ATP5B,BAZ2A,HSD17B6,NACA,PRIM1,PTGES3"
TCGA.AA.A010.01A	12	56997076	57004142	10	-0.1427	NEUTRAL	NA	1	BAZ2A
TCGA.AA.A00N.01A	12	56999577	57029871	12	-0.155	NEUTRAL	NA	1	BAZ2A
TCGA.AG.3909.01A	12	56999984	57029871	11	0.2509	NEUTRAL	NA	1	BAZ2A
TCGA.AA.A01Q.01A	12	57038903	57388944	26	0.1727	NEUTRAL	NA	8	"ATP5B,GPR182,HSD17B6,NACA,PRIM1,PTGES3,RDH16,SDR9C7"
TCGA.CK.5914.01A	12	57039569	57108086	12	-0.0648	NEUTRAL	NA	3	"ATP5B,NACA,PTGES3"
TCGA.AG.4009.01A	12	57039569	57144805	26	-0.042	NEUTRAL	NA	4	"ATP5B,NACA,PRIM1,PTGES3"
TCGA.AG.A01L.01A	12	57058174	57108086	10	-0.3265	NEUTRAL	NA	2	"NACA,PTGES3"
TCGA.AG.3909.01A	12	57059923	57066460	4	-0.3105	NEUTRAL	NA	1	PTGES3
TCGA.AA.A010.01A	12	57064004	57066460	3	-0.4716	NEUTRAL	NA	1	PTGES3
TCGA.QG.A5Z1	12	57065712	112715323	16735	-0.3362	NEUTRAL	NA	302	Too-Many
TCGA.AA.A00F.01A	12	57066460	57167589	9	0.0824	NEUTRAL	NA	4	"HSD17B6,NACA,PRIM1,PTGES3"
TCGA.AA.3862.01A	12	57081695	63954275	514	-0.0158	NEUTRAL	NA	53	"AGAP2,ARHGAP9,ARHGEF25,AVIL,AVPR1A,B4GALNT1,CDK4,CTDSP2,CYP27B1,DCTN2,DDIT3,DPY19L2,DTX3,FAM19A2,GLI1,GPR182,HSD17B6,INHBC,INHBE,KIF5A,LRIG3,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,MON2,MYO1A,NAB2,NACA,NDUFA4L2,NXPH4,OS9,PIP4K2C,PPM1H,PRIM1,PTGES3,R3HDM2,RDH16,SDR9C7,SHMT2,SLC16A7,SLC26A10,STAC3,STAT6,TAC3,TMEM194A,TSFM,TSPAN31,USP15,XRCC6BP1,ZBTB39"
TCGA.AG.A015.01A	12	57106250	57109677	5	-0.3877	NEUTRAL	NA	1	NACA
TCGA.AG.A00C.01A	12	57106250	57127881	11	-0.2662	NEUTRAL	NA	2	"NACA,PRIM1"
TCGA.AG.3891.01A	12	57109677	57118174	6	-0.4507	NEUTRAL	NA	1	NACA
TCGA.AG.A00H.01A	12	57109677	57180862	20	-0.1794	NEUTRAL	NA	3	"HSD17B6,NACA,PRIM1"
TCGA.AG.A016.01A	12	57109677	57535120	84	-0.1585	NEUTRAL	NA	13	"GPR182,HSD17B6,LRP1,MYO1A,NAB2,NACA,PRIM1,RDH16,SDR9C7,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AG.A01L.01A	12	57109677	57637558	162	0.0973	NEUTRAL	NA	17	"GPR182,HSD17B6,LRP1,MYO1A,NAB2,NACA,NDUFA4L2,NXPH4,PRIM1,RDH16,SDR9C7,SHMT2,STAC3,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AG.A015.01A	12	57112010	57501907	81	0.3511	NEUTRAL	NA	12	"GPR182,HSD17B6,MYO1A,NAB2,NACA,PRIM1,RDH16,SDR9C7,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AA.A024.01A	12	57112010	57567526	101	0.0198	NEUTRAL	NA	13	"GPR182,HSD17B6,LRP1,MYO1A,NAB2,NACA,PRIM1,RDH16,SDR9C7,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AG.3909.01A	12	57113203	57132167	6	0.0676	NEUTRAL	NA	2	"NACA,PRIM1"
TCGA.CK.5914.01A	12	57113203	57180862	19	-0.5061	NEUTRAL	NA	3	"HSD17B6,NACA,PRIM1"
TCGA.A6.3808.01A	12	57114573	57592978	135	0.2479	NEUTRAL	NA	13	"GPR182,HSD17B6,LRP1,MYO1A,NAB2,NACA,PRIM1,RDH16,SDR9C7,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AA.3930.01A	12	57118174	57570864	104	0.2224	NEUTRAL	NA	13	"GPR182,HSD17B6,LRP1,MYO1A,NAB2,NACA,PRIM1,RDH16,SDR9C7,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AA.A010.01A	12	57125412	57145942	12	0.0901	NEUTRAL	NA	1	PRIM1
TCGA.AG.3891.01A	12	57125412	57167589	13	0.2648	NEUTRAL	NA	2	"HSD17B6,PRIM1"
TCGA.AG.3906.01A	12	57127881	57167589	12	0.1587	NEUTRAL	NA	2	"HSD17B6,PRIM1"
TCGA.AA.A00Q.01A	12	57180862	57556123	75	0.0026	NEUTRAL	NA	11	"GPR182,HSD17B6,LRP1,MYO1A,NAB2,RDH16,SDR9C7,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AA.3509.01A	12	57180862	58347334	403	-0.0814	NEUTRAL	NA	42	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CTDSP2,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,GPR182,HSD17B6,INHBC,INHBE,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,MYO1A,NAB2,NDUFA4L2,NXPH4,OS9,PIP4K2C,R3HDM2,RDH16,SDR9C7,SHMT2,SLC26A10,STAC3,STAT6,TAC3,TMEM194A,TSFM,TSPAN31,XRCC6BP1,ZBTB39"
TCGA.AZ.4684.01A	12	57180862	62715207	434	-0.0121	NEUTRAL	NA	46	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CTDSP2,CYP27B1,DCTN2,DDIT3,DTX3,FAM19A2,GLI1,GPR182,HSD17B6,INHBC,INHBE,KIF5A,LRIG3,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,MYO1A,NAB2,NDUFA4L2,NXPH4,OS9,PIP4K2C,R3HDM2,RDH16,SDR9C7,SHMT2,SLC16A7,SLC26A10,STAC3,STAT6,TAC3,TMEM194A,TSFM,TSPAN31,USP15,XRCC6BP1,ZBTB39"
TCGA.AG.A00C.01A	12	57317569	57345776	5	-0.1381	NEUTRAL	NA	2	"RDH16,SDR9C7"
TCGA.AG.3891.01A	12	57317569	57350917	8	0.0218	NEUTRAL	NA	2	"RDH16,SDR9C7"
TCGA.AG.3906.01A	12	57317569	57350917	8	-0.0165	NEUTRAL	NA	2	"RDH16,SDR9C7"
TCGA.AA.A00F.01A	12	57317569	57389852	7	-0.1562	NEUTRAL	NA	3	"GPR182,RDH16,SDR9C7"
TCGA.AA.A00N.01A	12	57317569	57409441	16	-0.0675	NEUTRAL	NA	5	"GPR182,RDH16,SDR9C7,TAC3,ZBTB39"
TCGA.CK.5914.01A	12	57317569	57422487	17	0.142	NEUTRAL	NA	6	"GPR182,MYO1A,RDH16,SDR9C7,TAC3,ZBTB39"
TCGA.AA.A00D.01A	12	57317569	57441755	34	-0.3013	NEUTRAL	NA	6	"GPR182,MYO1A,RDH16,SDR9C7,TAC3,ZBTB39"
TCGA.AA.A010.01A	12	57323137	57350917	7	-0.0799	NEUTRAL	NA	2	"RDH16,SDR9C7"
TCGA.AG.A00C.01A	12	57346599	57407056	10	0.3335	NEUTRAL	NA	4	"GPR182,RDH16,TAC3,ZBTB39"
TCGA.AG.A00H.01A	12	57388944	57409441	8	-0.2992	NEUTRAL	NA	3	"GPR182,TAC3,ZBTB39"
TCGA.AA.A02H.01A	12	57388944	57430521	16	0.1154	NEUTRAL	NA	4	"GPR182,MYO1A,TAC3,ZBTB39"
TCGA.AA.A00K.01A	12	57388944	57605223	126	0.102	NEUTRAL	NA	8	"GPR182,LRP1,MYO1A,NAB2,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AA.A00F.01A	12	57396556	57407056	5	0.2449	NEUTRAL	NA	2	"TAC3,ZBTB39"
TCGA.AG.4009.01A	12	57409441	57472375	30	-0.0059	NEUTRAL	NA	3	"MYO1A,TAC3,TMEM194A"
TCGA.AA.A01Q.01A	12	57409441	57484921	32	0.1657	NEUTRAL	NA	4	"MYO1A,NAB2,TAC3,TMEM194A"
TCGA.AA.A00F.01A	12	57409441	57574911	80	-0.0602	NEUTRAL	NA	6	"LRP1,MYO1A,NAB2,STAT6,TAC3,TMEM194A"
TCGA.AG.A00C.01A	12	57409441	57596927	104	-0.0589	NEUTRAL	NA	6	"LRP1,MYO1A,NAB2,STAT6,TAC3,TMEM194A"
TCGA.AG.3906.01A	12	57422487	57571179	70	0.2391	NEUTRAL	NA	5	"LRP1,MYO1A,NAB2,STAT6,TMEM194A"
TCGA.AG.3891.01A	12	57422487	57882338	179	0.1941	NEUTRAL	NA	15	"ARHGAP9,GLI1,INHBC,INHBE,LRP1,MARS,MYO1A,NAB2,NDUFA4L2,NXPH4,R3HDM2,SHMT2,STAC3,STAT6,TMEM194A"
TCGA.AA.A010.01A	12	57430031	57501907	45	-0.3146	NEUTRAL	NA	4	"MYO1A,NAB2,STAT6,TMEM194A"
TCGA.AG.3909.01A	12	57453625	57456875	3	0.3209	NEUTRAL	NA	1	TMEM194A
TCGA.AA.A00N.01A	12	57453625	57500958	28	-0.2461	NEUTRAL	NA	3	"NAB2,STAT6,TMEM194A"
TCGA.AA.A00D.01A	12	57453625	97957564	1419	-0.0074	NEUTRAL	NA	176	Too-Many
TCGA.CK.4948.01B	12	57456875	57651736	122	0.1325	NEUTRAL	NA	9	"LRP1,NAB2,NDUFA4L2,NXPH4,R3HDM2,SHMT2,STAC3,STAT6,TMEM194A"
TCGA.AG.3909.01A	12	57457802	57472375	5	0.0745	NEUTRAL	NA	1	TMEM194A
TCGA.AA.A02H.01A	12	57457802	59307994	340	-0.3765	NEUTRAL	NA	36	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CTDSP2,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,LRIG3,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,NAB2,NDUFA4L2,NXPH4,OS9,PIP4K2C,R3HDM2,SHMT2,SLC26A10,STAC3,STAT6,TMEM194A,TSFM,TSPAN31,XRCC6BP1"
TCGA.CK.5914.01A	12	57458374	57493518	16	-0.1695	NEUTRAL	NA	3	"NAB2,STAT6,TMEM194A"
TCGA.AA.A01Q.01A	12	57486189	57560665	34	-0.3884	NEUTRAL	NA	3	"LRP1,NAB2,STAT6"
TCGA.AG.A00H.01A	12	57486628	57552156	24	0.2179	NEUTRAL	NA	3	"LRP1,NAB2,STAT6"
TCGA.AG.4009.01A	12	57496581	57501907	9	-0.1242	NEUTRAL	NA	1	STAT6
TCGA.AG.3909.01A	12	57498195	57500958	6	0.0258	NEUTRAL	NA	1	STAT6
TCGA.CM.6172	12	57512469	133777644	24472	-0.189	NEUTRAL	NA	452	Too-Many
TCGA.AG.4009.01A	12	57532190	57554638	10	0.3106	NEUTRAL	NA	1	LRP1
TCGA.AG.A015.01A	12	57532190	57561167	14	-0.0693	NEUTRAL	NA	1	LRP1
TCGA.AA.A00Q.01A	12	57556594	57586581	27	-0.3319	NEUTRAL	NA	1	LRP1
TCGA.CK.5914.01A	12	57561167	57572095	9	-0.1449	NEUTRAL	NA	1	LRP1
TCGA.AA.A00N.01A	12	57561167	57572656	10	0.0797	NEUTRAL	NA	1	LRP1
TCGA.AG.A015.01A	12	57562875	57569675	5	0.3261	NEUTRAL	NA	1	LRP1
TCGA.AA.3939.01A	12	57566901	57604941	51	0.2056	NEUTRAL	NA	1	LRP1
TCGA.AG.3909.01A	12	57569214	57574911	11	-0.3977	NEUTRAL	NA	1	LRP1
TCGA.AG.A016.01A	12	57570864	57638647	58	0.0806	NEUTRAL	NA	5	"LRP1,NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.AA.3930.01A	12	57571179	57591291	26	-0.1314	NEUTRAL	NA	1	LRP1
TCGA.AG.A00H.01A	12	57571179	57630741	55	0.2847	NEUTRAL	NA	4	"LRP1,NDUFA4L2,NXPH4,SHMT2"
TCGA.AA.A024.01A	12	57571179	58109511	210	0.2037	NEUTRAL	NA	21	"ARHGAP9,ARHGEF25,B4GALNT1,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,LRP1,MARS,MBD6,NDUFA4L2,NXPH4,OS9,PIP4K2C,R3HDM2,SHMT2,SLC26A10,STAC3"
TCGA.AA.A010.01A	12	57572095	57581002	13	-0.1553	NEUTRAL	NA	1	LRP1
TCGA.AG.3906.01A	12	57572095	57581002	13	-0.2026	NEUTRAL	NA	1	LRP1
TCGA.AA.A01F.01A	12	57572656	57605223	45	-0.0017	NEUTRAL	NA	1	LRP1
TCGA.AA.A00N.01A	12	57573063	57642793	64	-0.4629	NEUTRAL	NA	5	"LRP1,NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.AG.4009.01A	12	57577130	57589419	15	0.3108	NEUTRAL	NA	1	LRP1
TCGA.AA.A00F.01A	12	57577130	57640547	56	0.2091	NEUTRAL	NA	5	"LRP1,NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.AG.3906.01A	12	57584557	57596152	20	0.3043	NEUTRAL	NA	1	LRP1
TCGA.AA.A00Q.01A	12	57586917	57649724	53	-0.0958	NEUTRAL	NA	6	"LRP1,NDUFA4L2,NXPH4,R3HDM2,SHMT2,STAC3"
TCGA.AG.4009.01A	12	57590718	57624557	26	-0.1902	NEUTRAL	NA	3	"LRP1,NXPH4,SHMT2"
TCGA.AA.3930.01A	12	57591922	57637834	35	0.1794	NEUTRAL	NA	5	"LRP1,NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.AG.3909.01A	12	57596152	57642793	32	0.03	NEUTRAL	NA	5	"LRP1,NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.AA.A02K.01A	12	57596153	57598844	4	-0.4581	NEUTRAL	NA	1	LRP1
TCGA.AG.A00C.01A	12	57598164	57641844	28	0.298	NEUTRAL	NA	5	"LRP1,NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.AA.A02K.01A	12	57599157	57604922	8	0.0292	NEUTRAL	NA	1	LRP1
TCGA.AG.A015.01A	12	57602467	57630741	19	0.3775	NEUTRAL	NA	4	"LRP1,NDUFA4L2,NXPH4,SHMT2"
TCGA.CK.5914.01A	12	57610685	57642793	20	-0.3139	NEUTRAL	NA	4	"NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.AA.A01F.01A	12	57610685	123310891	3118	-0.3131	NEUTRAL	NA	385	Too-Many
TCGA.AA.A02K.01A	12	57610725	57637549	13	-0.3571	NEUTRAL	NA	4	"NDUFA4L2,NXPH4,SHMT2,STAC3"
TCGA.AA.A01Q.01A	12	57624557	57642793	17	-0.2294	NEUTRAL	NA	3	"NDUFA4L2,SHMT2,STAC3"
TCGA.AG.4009.01A	12	57625216	57861760	39	0.1194	NEUTRAL	NA	7	"GLI1,INHBC,INHBE,NDUFA4L2,R3HDM2,SHMT2,STAC3"
TCGA.AA.A02K.01A	12	57637825	96330170	1681	0.0533	NEUTRAL	NA	162	Too-Many
TCGA.AG.A015.01A	12	57637834	57861068	29	-0.0053	NEUTRAL	NA	5	"GLI1,INHBC,INHBE,R3HDM2,STAC3"
TCGA.AG.A01L.01A	12	57637834	57861068	30	-0.2814	NEUTRAL	NA	5	"GLI1,INHBC,INHBE,R3HDM2,STAC3"
TCGA.AG.A00H.01A	12	57637834	58195892	204	-0.4937	NEUTRAL	NA	26	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,MARCH9,MARS,MBD6,METTL1,METTL21B,OS9,PIP4K2C,R3HDM2,SLC26A10,STAC3,TSFM,TSPAN31"
TCGA.AG.3906.01A	12	57640547	57881824	46	0.2803	NEUTRAL	NA	7	"ARHGAP9,GLI1,INHBC,INHBE,MARS,R3HDM2,STAC3"
TCGA.AA.A00F.01A	12	57641844	57677555	16	-0.1787	NEUTRAL	NA	2	"R3HDM2,STAC3"
TCGA.AG.A00C.01A	12	57642452	57677555	15	-0.2138	NEUTRAL	NA	2	"R3HDM2,STAC3"
TCGA.AA.A00Q.01A	12	57650145	57677555	10	0.2653	NEUTRAL	NA	1	R3HDM2
TCGA.AA.A010.01A	12	57650145	57704010	21	0.1331	NEUTRAL	NA	1	R3HDM2
TCGA.CK.4948.01B	12	57666187	78552925	1022	0.2226	NEUTRAL	NA	102	Too-Many
TCGA.AA.3930.01A	12	57674090	58201938	213	0.2244	NEUTRAL	NA	25	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,MARCH9,MARS,MBD6,METTL1,METTL21B,OS9,PIP4K2C,R3HDM2,SLC26A10,TSFM,TSPAN31"
TCGA.AA.A00N.01A	12	57682600	57849867	14	0.1932	NEUTRAL	NA	3	"INHBC,INHBE,R3HDM2"
TCGA.CK.5914.01A	12	57686301	57858419	16	0.1548	NEUTRAL	NA	4	"GLI1,INHBC,INHBE,R3HDM2"
TCGA.AG.3909.01A	12	57689150	57843022	5	0.0942	NEUTRAL	NA	2	"INHBC,R3HDM2"
TCGA.AG.A00C.01A	12	57691043	58145236	163	0.3686	NEUTRAL	NA	19	"AGAP2,ARHGAP9,ARHGEF25,B4GALNT1,CDK4,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,MARS,MBD6,OS9,PIP4K2C,R3HDM2,SLC26A10,TSPAN31"
TCGA.AA.3861.01A	12	57693820	63954275	312	0.2975	NEUTRAL	NA	35	"AGAP2,ARHGAP9,ARHGEF25,AVIL,AVPR1A,B4GALNT1,CDK4,CTDSP2,CYP27B1,DCTN2,DDIT3,DPY19L2,DTX3,FAM19A2,GLI1,INHBC,INHBE,KIF5A,LRIG3,MARCH9,MARS,MBD6,METTL1,METTL21B,MON2,OS9,PIP4K2C,PPM1H,R3HDM2,SLC16A7,SLC26A10,TSFM,TSPAN31,USP15,XRCC6BP1"
TCGA.AA.3864	12	57763519	58440859	129	0.2332	NEUTRAL	NA	26	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CTDSP2,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,MARCH9,MARS,MBD6,METTL1,METTL21B,OS9,PIP4K2C,SLC26A10,TSFM,TSPAN31,XRCC6BP1"
TCGA.AA.A00Q.01A	12	57828639	57866269	15	-0.309	NEUTRAL	NA	4	"ARHGAP9,GLI1,INHBC,INHBE"
TCGA.AA.A010.01A	12	57828639	57881824	31	-0.5091	NEUTRAL	NA	5	"ARHGAP9,GLI1,INHBC,INHBE,MARS"
TCGA.AA.A00F.01A	12	57828639	58168360	161	0.2589	NEUTRAL	NA	22	"AGAP2,ARHGAP9,ARHGEF25,B4GALNT1,CDK4,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,MARCH9,MARS,MBD6,METTL1,METTL21B,OS9,PIP4K2C,SLC26A10,TSPAN31"
TCGA.AG.A016.01A	12	57828639	133778682	4532	-0.1238	NEUTRAL	NA	446	Too-Many
TCGA.A6.3808.01A	12	57859971	58159740	170	-0.2258	NEUTRAL	NA	18	"AGAP2,ARHGAP9,ARHGEF25,B4GALNT1,CDK4,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,KIF5A,MARCH9,MARS,MBD6,OS9,PIP4K2C,SLC26A10,TSPAN31"
TCGA.AG.A01L.01A	12	57861760	57870356	11	0.2276	NEUTRAL	NA	2	"ARHGAP9,GLI1"
TCGA.AG.4009.01A	12	57863195	57881824	16	-0.2205	NEUTRAL	NA	3	"ARHGAP9,GLI1,MARS"
TCGA.AA.A00Q.01A	12	57867339	57974732	59	0.1215	NEUTRAL	NA	6	"ARHGAP9,DCTN2,DDIT3,KIF5A,MARS,MBD6"
TCGA.AG.A02X.01A	12	57870909	58200102	165	-0.3458	NEUTRAL	NA	21	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CYP27B1,DCTN2,DDIT3,DTX3,KIF5A,MARCH9,MARS,MBD6,METTL1,METTL21B,OS9,PIP4K2C,SLC26A10,TSFM,TSPAN31"
TCGA.AG.A015.01A	12	57871273	57897969	12	-0.0047	NEUTRAL	NA	2	"ARHGAP9,MARS"
TCGA.AG.A01L.01A	12	57873465	57894063	8	0.0683	NEUTRAL	NA	2	"ARHGAP9,MARS"
TCGA.AG.A01L.01A	12	57918037	57922669	8	0.0122	NEUTRAL	NA	1	MBD6
TCGA.AA.A01Q.01A	12	57919080	57975211	29	-0.21	NEUTRAL	NA	3	"DCTN2,KIF5A,MBD6"
TCGA.AF.3914.01A	12	57921239	57924416	4	0.1513	NEUTRAL	NA	2	"DCTN2,MBD6"
TCGA.AG.4009.01A	12	57925773	57929251	7	-0.3107	NEUTRAL	NA	1	DCTN2
TCGA.AG.A015.01A	12	57925773	57929485	8	-0.2856	NEUTRAL	NA	1	DCTN2
TCGA.AG.A01L.01A	12	57926290	93162722	1300	0.0333	NEUTRAL	NA	135	Too-Many
TCGA.AG.A025.01A	12	57928812	58191613	129	-0.4755	NEUTRAL	NA	17	"AGAP2,ARHGEF25,AVIL,B4GALNT1,CDK4,CYP27B1,DCTN2,DTX3,KIF5A,MARCH9,METTL1,METTL21B,OS9,PIP4K2C,SLC26A10,TSFM,TSPAN31"
TCGA.AG.4009.01A	12	57929485	57989654	31	0.1646	NEUTRAL	NA	3	"DCTN2,KIF5A,PIP4K2C"
TCGA.AG.3891.01A	12	57929485	58004313	42	0.1476	NEUTRAL	NA	5	"ARHGEF25,DCTN2,DTX3,KIF5A,PIP4K2C"
TCGA.AG.3906.01A	12	57929485	58109511	71	0.2392	NEUTRAL	NA	8	"ARHGEF25,B4GALNT1,DCTN2,DTX3,KIF5A,OS9,PIP4K2C,SLC26A10"
TCGA.AF.3914.01A	12	57939747	57989654	31	0.0762	NEUTRAL	NA	3	"DCTN2,KIF5A,PIP4K2C"
TCGA.AG.A015.01A	12	57939747	58002272	39	0.1947	NEUTRAL	NA	4	"DCTN2,DTX3,KIF5A,PIP4K2C"
TCGA.AA.A010.01A	12	57939747	58090016	73	-0.1496	NEUTRAL	NA	8	"ARHGEF25,B4GALNT1,DCTN2,DTX3,KIF5A,OS9,PIP4K2C,SLC26A10"
TCGA.AA.A00N.01A	12	57940728	57975211	23	-0.4535	NEUTRAL	NA	2	"DCTN2,KIF5A"
TCGA.CK.5914.01A	12	57940728	57975633	24	0.0869	NEUTRAL	NA	2	"DCTN2,KIF5A"
TCGA.AG.3909.01A	12	57944027	57975211	22	-0.0169	NEUTRAL	NA	1	KIF5A
TCGA.AA.A01K.01A	12	57968829	57989654	15	-0.0013	NEUTRAL	NA	2	"KIF5A,PIP4K2C"
TCGA.AA.A00Q.01A	12	57975211	58025700	40	-0.1805	NEUTRAL	NA	6	"ARHGEF25,B4GALNT1,DTX3,KIF5A,PIP4K2C,SLC26A10"
TCGA.AA.A00A.01A	12	57975633	69096439	408	0.0392	NEUTRAL	NA	53	"AGAP2,ARHGEF25,AVIL,AVPR1A,B4GALNT1,C12orf56,C12orf66,CAND1,CDK4,CTDSP2,CYP27B1,DPY19L2,DTX3,DYRK2,FAM19A2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KIF5A,LEMD3,LLPH,LOC100129940,LRIG3,MARCH9,MDM1,METTL1,METTL21B,MON2,MSRB3,NUP107,OS9,PIP4K2C,PPM1H,RAP1B,RASSF3,SLC16A7,SLC26A10,SRGAP1,TBC1D30,TBK1,TMBIM4,TMEM5,TSFM,TSPAN31,USP15,WIF1,XPOT,XRCC6BP1"
TCGA.AA.A029.01A	12	58009265	58195892	75	-0.1445	NEUTRAL	NA	13	"AGAP2,ARHGEF25,AVIL,B4GALNT1,CDK4,CYP27B1,MARCH9,METTL1,METTL21B,OS9,SLC26A10,TSFM,TSPAN31"
TCGA.AG.A015.01A	12	58014022	106804585	2171	0.2909	NEUTRAL	NA	207	Too-Many
TCGA.AG.3891.01A	12	58014680	58109511	18	0.1112	NEUTRAL	NA	3	"B4GALNT1,OS9,SLC26A10"
TCGA.AF.3914.01A	12	58014680	58122044	30	-0.2554	NEUTRAL	NA	4	"AGAP2,B4GALNT1,OS9,SLC26A10"
TCGA.AG.4009.01A	12	58015014	58120805	25	-0.2833	NEUTRAL	NA	4	"AGAP2,B4GALNT1,OS9,SLC26A10"
TCGA.AA.A01K.01A	12	58020517	58195892	67	-0.3686	NEUTRAL	NA	11	"AGAP2,AVIL,B4GALNT1,CDK4,CYP27B1,MARCH9,METTL1,METTL21B,OS9,TSFM,TSPAN31"
TCGA.CK.5914.01A	12	58025700	58110183	7	0.294	NEUTRAL	NA	2	"B4GALNT1,OS9"
TCGA.AG.3909.01A	12	58087914	58139477	29	0.2923	NEUTRAL	NA	3	"AGAP2,OS9,TSPAN31"
TCGA.AA.A00Q.01A	12	58087914	91572072	897	0.1126	NEUTRAL	NA	122	Too-Many
TCGA.AA.A02F.01A	12	58123385	133778682	4116	0.0358	NEUTRAL	NA	431	Too-Many
TCGA.AA.3967.01A	12	58128329	58204562	49	0.3282	NEUTRAL	NA	9	"AGAP2,AVIL,CDK4,CYP27B1,MARCH9,METTL1,METTL21B,TSFM,TSPAN31"
TCGA.AG.A00Y.01A	12	58144402	93285362	1230	-0.1788	NEUTRAL	NA	126	Too-Many
TCGA.AG.A00C.01A	12	58151844	58168360	15	0.1291	NEUTRAL	NA	4	"CYP27B1,MARCH9,METTL1,METTL21B"
TCGA.AG.A008.01A	12	58151844	80765723	895	0.0864	NEUTRAL	NA	87	"ATXN7L3B,AVIL,AVPR1A,BBS10,BEST3,C12orf56,C12orf66,CAND1,CAPS2,CCT2,CNOT2,CPM,CPSF6,CSRP2,CTDSP2,CYP27B1,DPY19L2,DYRK2,E2F7,FAM19A2,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNC2,KCNMB4,KRR1,LEMD3,LGR5,LLPH,LOC100129940,LRIG3,LRRC10,LYZ,MARCH9,MDM1,MDM2,METTL1,METTL21B,MON2,MSRB3,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPM1H,PPP1R12A,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,SLC16A7,SLC35E3,SRGAP1,SYT1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMEM5,TPH2,TRHDE,TSFM,TSPAN8,USP15,WIF1,XPOT,XRCC6BP1,YEATS4,ZDHHC17,ZFC3H1"
TCGA.AG.3891.01A	12	58157406	58193577	21	0.1455	NEUTRAL	NA	5	"AVIL,CYP27B1,METTL1,METTL21B,TSFM"
TCGA.AG.4009.01A	12	58157406	64784044	195	-0.093	NEUTRAL	NA	19	"AVIL,AVPR1A,C12orf56,C12orf66,CTDSP2,CYP27B1,DPY19L2,FAM19A2,LRIG3,METTL1,METTL21B,MON2,PPM1H,SLC16A7,SRGAP1,TMEM5,TSFM,USP15,XRCC6BP1"
TCGA.CK.5914.01A	12	58158112	58193577	21	-0.4705	NEUTRAL	NA	5	"AVIL,CYP27B1,METTL1,METTL21B,TSFM"
TCGA.AA.A024.01A	12	58158505	133778682	4475	0.0205	NEUTRAL	NA	427	Too-Many
TCGA.AA.A01Q.01A	12	58165747	104133121	1520	0.0641	NEUTRAL	NA	179	Too-Many
TCGA.AF.3914.01A	12	58165747	104709508	2008	-0.0427	NEUTRAL	NA	188	Too-Many
TCGA.AG.3909.01A	12	58174006	58186715	5	-0.051	NEUTRAL	NA	2	"METTL21B,TSFM"
TCGA.AA.A00F.01A	12	58174006	59283741	36	-0.1499	NEUTRAL	NA	6	"AVIL,CTDSP2,LRIG3,METTL21B,TSFM,XRCC6BP1"
TCGA.AG.A00C.01A	12	58174006	64669059	177	-0.1421	NEUTRAL	NA	17	"AVIL,AVPR1A,C12orf56,C12orf66,CTDSP2,DPY19L2,FAM19A2,LRIG3,METTL21B,MON2,PPM1H,SLC16A7,SRGAP1,TMEM5,TSFM,USP15,XRCC6BP1"
TCGA.AA.A010.01A	12	58176515	64784044	187	0.1708	NEUTRAL	NA	16	"AVIL,AVPR1A,C12orf56,C12orf66,CTDSP2,DPY19L2,FAM19A2,LRIG3,MON2,PPM1H,SLC16A7,SRGAP1,TMEM5,TSFM,USP15,XRCC6BP1"
TCGA.AG.3906.01A	12	58189938	64724680	175	-0.0717	NEUTRAL	NA	16	"AVIL,AVPR1A,C12orf56,C12orf66,CTDSP2,DPY19L2,FAM19A2,LRIG3,MON2,PPM1H,SLC16A7,SRGAP1,TMEM5,TSFM,USP15,XRCC6BP1"
TCGA.AG.A025.01A	12	58193577	133778682	4400	-0.1229	NEUTRAL	NA	424	Too-Many
TCGA.CK.5914.01A	12	58194870	58335436	21	0.3172	NEUTRAL	NA	3	"AVIL,CTDSP2,TSFM"
TCGA.AG.3891.01A	12	58194870	102419726	1811	-0.1463	NEUTRAL	NA	169	Too-Many
TCGA.AG.A01N.01A	12	58194870	108910713	2214	-0.1108	NEUTRAL	NA	209	Too-Many
TCGA.AA.A00N.01A	12	58195892	60173206	48	0.1124	NEUTRAL	NA	6	"AVIL,CTDSP2,LRIG3,SLC16A7,TSFM,XRCC6BP1"
TCGA.AA.A01C.01A	12	58195892	64198977	137	0.1331	NEUTRAL	NA	13	"AVIL,AVPR1A,CTDSP2,DPY19L2,FAM19A2,LRIG3,MON2,PPM1H,SLC16A7,TMEM5,TSFM,USP15,XRCC6BP1"
TCGA.AG.A00H.01A	12	58197000	65856888	254	0.2471	NEUTRAL	NA	23	"AVIL,AVPR1A,C12orf56,C12orf66,CTDSP2,DPY19L2,FAM19A2,GNS,LEMD3,LRIG3,MON2,MSRB3,PPM1H,RASSF3,SLC16A7,SRGAP1,TBC1D30,TBK1,TMEM5,USP15,WIF1,XPOT,XRCC6BP1"
TCGA.AA.A01K.01A	12	58197000	120593366	3251	0.1154	NEUTRAL	NA	306	Too-Many
TCGA.AG.A02X.01A	12	58201067	133778682	4377	0.1436	NEUTRAL	NA	423	Too-Many
TCGA.AA.3930.01A	12	58203328	64174750	132	-0.0829	NEUTRAL	NA	12	"AVIL,AVPR1A,CTDSP2,DPY19L2,FAM19A2,LRIG3,MON2,PPM1H,SLC16A7,TMEM5,USP15,XRCC6BP1"
TCGA.AA.3967.01A	12	58206963	64678389	159	-0.0993	NEUTRAL	NA	15	"AVIL,AVPR1A,C12orf56,C12orf66,CTDSP2,DPY19L2,FAM19A2,LRIG3,MON2,PPM1H,SLC16A7,SRGAP1,TMEM5,USP15,XRCC6BP1"
TCGA.AA.A02E.01A	12	58209694	120518644	3248	-0.1809	NEUTRAL	NA	304	Too-Many
TCGA.AG.3909.01A	12	58220767	64040978	116	0.1048	NEUTRAL	NA	10	"AVPR1A,CTDSP2,DPY19L2,FAM19A2,LRIG3,MON2,PPM1H,SLC16A7,USP15,XRCC6BP1"
TCGA.CM.6677	12	58222671	85688344	8315	-0.2707	NEUTRAL	NA	94	"ACSS3,ALX1,ATXN7L3B,AVPR1A,BBS10,BEST3,C12orf56,C12orf66,CAND1,CAPS2,CCDC59,CCT2,CNOT2,CPM,CPSF6,CSRP2,CTDSP2,DPY19L2,DYRK2,E2F7,FAM19A2,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNC2,KCNMB4,KRR1,LEMD3,LGR5,LIN7A,LLPH,LOC100129940,LRIG3,LRRC10,LRRIQ1,LYZ,MDM1,MDM2,METTL25,MON2,MSRB3,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPM1H,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,SLC16A7,SLC35E3,SLC6A15,SRGAP1,SYT1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMEM5,TMTC2,TPH2,TRHDE,TSPAN19,TSPAN8,USP15,WIF1,XPOT,XRCC6BP1,YEATS4,ZDHHC17,ZFC3H1"
TCGA.D5.6926	12	58256009	96957560	11669	-0.208	NEUTRAL	NA	141	Too-Many
TCGA.AA.3941	12	58349256	58463699	29	0.0219	NEUTRAL	NA	1	XRCC6BP1
TCGA.AA.3850	12	58349256	58497487	49	-0.32945	NEUTRAL	NA	1	XRCC6BP1
TCGA.AA.3509.01A	12	58350433	62715207	31	0.3135	NEUTRAL	NA	5	"FAM19A2,LRIG3,SLC16A7,USP15,XRCC6BP1"
TCGA.AG.A01J.01A	12	58350433	109196032	2219	0.0364	NEUTRAL	NA	212	Too-Many
TCGA.AA.3844	12	58369932	58522300	58	0.3267	NEUTRAL	NA	0	None
TCGA.AA.3982	12	58369932	59622402	476	-0.2105	NEUTRAL	NA	1	LRIG3
TCGA.AA.3811	12	58374945	72393574	4598	-0.1444	NEUTRAL	NA	59	"AVPR1A,BEST3,C12orf56,C12orf66,CAND1,CCT2,CNOT2,CPM,CPSF6,DPY19L2,DYRK2,FAM19A2,FRS2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNMB4,LEMD3,LGR5,LLPH,LOC100129940,LRIG3,LRRC10,LYZ,MDM1,MDM2,MON2,MSRB3,MYRFL,NUP107,PPM1H,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,SLC16A7,SLC35E3,SRGAP1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMEM5,TPH2,TSPAN8,USP15,WIF1,XPOT,YEATS4,ZFC3H1"
TCGA.AA.3864	12	58461763	83856551	7821	-0.0767	NEUTRAL	NA	88	"ACSS3,ATXN7L3B,AVPR1A,BBS10,BEST3,C12orf56,C12orf66,CAND1,CAPS2,CCDC59,CCT2,CNOT2,CPM,CPSF6,CSRP2,DPY19L2,DYRK2,E2F7,FAM19A2,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNC2,KCNMB4,KRR1,LEMD3,LGR5,LIN7A,LLPH,LOC100129940,LRIG3,LRRC10,LYZ,MDM1,MDM2,METTL25,MON2,MSRB3,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPM1H,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,SLC16A7,SLC35E3,SRGAP1,SYT1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMEM5,TMTC2,TPH2,TRHDE,TSPAN8,USP15,WIF1,XPOT,YEATS4,ZDHHC17,ZFC3H1"
TCGA.AA.3850	12	58522300	58525281	4	-0.24465	NEUTRAL	NA	0	None
TCGA.AA.3941	12	58534767	58883506	155	0.0535	NEUTRAL	NA	0	None
TCGA.AA.3844	12	58534767	59785042	448	0.2354	NEUTRAL	NA	1	LRIG3
TCGA.AA.3850	12	58551296	58801026	96	-0.05995	NEUTRAL	NA	0	None
TCGA.DY.A1DC	12	58551296	73014057	4691	0.04	NEUTRAL	NA	60	"AVPR1A,BEST3,C12orf56,C12orf66,CAND1,CCT2,CNOT2,CPM,CPSF6,DPY19L2,DYRK2,FAM19A2,FRS2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNMB4,LEMD3,LGR5,LLPH,LOC100129940,LRIG3,LRRC10,LYZ,MDM1,MDM2,MON2,MSRB3,MYRFL,NUP107,PPM1H,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,SLC16A7,SLC35E3,SRGAP1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMEM5,TPH2,TRHDE,TSPAN8,USP15,WIF1,XPOT,YEATS4,ZFC3H1"
TCGA.AA.3941	12	58884221	62536273	1039	-0.5007	NEUTRAL	NA	3	"FAM19A2,LRIG3,SLC16A7"
TCGA.SS.A7HO	12	58994104	116104030	17815	-0.2944	NEUTRAL	NA	278	Too-Many
TCGA.CL.5917	12	59152364	62462935	911	0.0552	NEUTRAL	NA	3	"FAM19A2,LRIG3,SLC16A7"
TCGA.CK.5914.01A	12	59266305	59284410	15	0.2485	NEUTRAL	NA	1	LRIG3
TCGA.AG.3731	12	59280827	59435109	58	0.376	NEUTRAL	NA	1	LRIG3
TCGA.AA.A00F.01A	12	59284410	59307994	3	0.2895	NEUTRAL	NA	1	LRIG3
TCGA.AG.3731	12	59435542	112094434	16187	0.0692	NEUTRAL	NA	248	Too-Many
TCGA.AA.3844	12	59800580	62536273	745	-0.1011	NEUTRAL	NA	2	"FAM19A2,SLC16A7"
TCGA.AA.A00F.01A	12	60098536	64536056	103	-0.1494	NEUTRAL	NA	9	"AVPR1A,DPY19L2,FAM19A2,MON2,PPM1H,SLC16A7,SRGAP1,TMEM5,USP15"
TCGA.AA.A02H.01A	12	60098536	65136912	183	0.2107	NEUTRAL	NA	15	"AVPR1A,C12orf56,C12orf66,DPY19L2,FAM19A2,GNS,MON2,PPM1H,RASSF3,SLC16A7,SRGAP1,TBK1,TMEM5,USP15,XPOT"
TCGA.AG.A01W.01A	12	60433633	62464996	92	-0.0788	NEUTRAL	NA	1	FAM19A2
TCGA.NH.A50U	12	60880557	133777644	23530	0.25	NEUTRAL	NA	418	Too-Many
TCGA.DC.6155	12	61300872	61996850	206	0.2438	NEUTRAL	NA	0	None
TCGA.AG.A036.01A	12	61417490	62240513	8	-0.0848	NEUTRAL	NA	1	FAM19A2
TCGA.AA.3867	12	61701251	98074017	11156	-0.2259	NEUTRAL	NA	139	Too-Many
TCGA.DC.6155	12	62006000	93523366	9261	-0.3386	NEUTRAL	NA	115	Too-Many
TCGA.AG.A036.01A	12	62249230	87024568	1046	0.2066	NEUTRAL	NA	93	"ACSS3,ALX1,ATXN7L3B,AVPR1A,BBS10,BEST3,C12orf56,C12orf66,CAND1,CAPS2,CCDC59,CCT2,CNOT2,CPM,CPSF6,CSRP2,DPY19L2,DYRK2,E2F7,FAM19A2,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNC2,KCNMB4,KRR1,LEMD3,LGR5,LIN7A,LLPH,LOC100129940,LRRC10,LRRIQ1,LYZ,MDM1,MDM2,METTL25,MGAT4C,MON2,MSRB3,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NTS,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPM1H,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,RASSF9,SLC35E3,SLC6A15,SRGAP1,SYT1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMEM5,TMTC2,TPH2,TRHDE,TSPAN19,TSPAN8,USP15,WIF1,XPOT,YEATS4,ZDHHC17,ZFC3H1"
TCGA.CL.5917	12	62464333	76462611	4478	0.0045	NEUTRAL	NA	67	"ATXN7L3B,AVPR1A,BEST3,C12orf56,C12orf66,CAND1,CAPS2,CCT2,CNOT2,CPM,CPSF6,DPY19L2,DYRK2,FAM19A2,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNC2,KCNMB4,KRR1,LEMD3,LGR5,LLPH,LOC100129940,LRRC10,LYZ,MDM1,MDM2,MON2,MSRB3,MYRFL,NAP1L1,NUP107,PHLDA1,PPM1H,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,SLC35E3,SRGAP1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMEM5,TPH2,TRHDE,TSPAN8,USP15,WIF1,XPOT,YEATS4,ZFC3H1"
TCGA.AG.A01W.01A	12	62482091	63736027	101	-0.3721	NEUTRAL	NA	5	"AVPR1A,FAM19A2,MON2,PPM1H,USP15"
TCGA.AA.3982	12	62526331	71227310	2957	-0.0522	NEUTRAL	NA	49	"AVPR1A,BEST3,C12orf56,C12orf66,CAND1,CCT2,CNOT2,CPM,CPSF6,DPY19L2,DYRK2,FAM19A2,FRS2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNMB4,LEMD3,LLPH,LOC100129940,LRRC10,LYZ,MDM1,MDM2,MON2,MSRB3,MYRFL,NUP107,PPM1H,PTPRB,PTPRR,RAB3IP,RAP1B,RASSF3,SLC35E3,SRGAP1,TBC1D30,TBK1,TMBIM4,TMEM5,USP15,WIF1,XPOT,YEATS4"
TCGA.AA.3850	12	62535299	62660482	39	0.04595	NEUTRAL	NA	2	"FAM19A2,USP15"
TCGA.AA.3941	12	62537379	71282121	2977	0.1959	NEUTRAL	NA	49	"AVPR1A,BEST3,C12orf56,C12orf66,CAND1,CCT2,CNOT2,CPM,CPSF6,DPY19L2,DYRK2,FAM19A2,FRS2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNMB4,LEMD3,LLPH,LOC100129940,LRRC10,LYZ,MDM1,MDM2,MON2,MSRB3,MYRFL,NUP107,PPM1H,PTPRB,PTPRR,RAB3IP,RAP1B,RASSF3,SLC35E3,SRGAP1,TBC1D30,TBK1,TMBIM4,TMEM5,USP15,WIF1,XPOT,YEATS4"
TCGA.AA.3844	12	62537379	72412700	3356	0.3229	NEUTRAL	NA	57	"AVPR1A,BEST3,C12orf56,C12orf66,CAND1,CCT2,CNOT2,CPM,CPSF6,DPY19L2,DYRK2,FAM19A2,FRS2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNMB4,LEMD3,LGR5,LLPH,LOC100129940,LRRC10,LYZ,MDM1,MDM2,MON2,MSRB3,MYRFL,NUP107,PPM1H,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,SLC35E3,SRGAP1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMEM5,TPH2,TSPAN8,USP15,WIF1,XPOT,YEATS4,ZFC3H1"
TCGA.F4.6459	12	62538147	62657665	34	-0.4318	NEUTRAL	NA	2	"FAM19A2,USP15"
TCGA.F4.6459	12	62658227	133777644	23050	-0.0449	NEUTRAL	NA	417	Too-Many
TCGA.AA.3850	12	62672755	62817735	19	-0.25855	NEUTRAL	NA	1	USP15
TCGA.DM.A282.01A	12	62786826	133778682	4691	-0.0032	NEUTRAL	NA	417	Too-Many
TCGA.AA.3850	12	62818480	63335171	197	0.18475	NEUTRAL	NA	2	"MON2,PPM1H"
TCGA.AA.A00N.01A	12	62860977	62902053	8	-0.2509	NEUTRAL	NA	1	MON2
TCGA.AZ.4684.01A	12	62877901	64198977	70	0.3222	NEUTRAL	NA	5	"AVPR1A,DPY19L2,MON2,PPM1H,TMEM5"
TCGA.AA.3509.01A	12	62877901	68720219	294	0.1412	NEUTRAL	NA	29	"AVPR1A,C12orf56,C12orf66,CAND1,DPY19L2,DYRK2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LEMD3,LLPH,LOC100129940,MDM1,MON2,MSRB3,PPM1H,RASSF3,SRGAP1,TBC1D30,TBK1,TMBIM4,TMEM5,WIF1,XPOT"
TCGA.CK.5914.01A	12	62918248	64040978	57	0.2185	NEUTRAL	NA	4	"AVPR1A,DPY19L2,MON2,PPM1H"
TCGA.DM.A28M.01A	12	62919702	102576310	1811	0.3143	NEUTRAL	NA	163	Too-Many
TCGA.AG.4008	12	62921061	64920956	552	0.0449	NEUTRAL	NA	10	"AVPR1A,C12orf56,C12orf66,DPY19L2,MON2,PPM1H,SRGAP1,TBK1,TMEM5,XPOT"
TCGA.AA.A00N.01A	12	62958969	62972214	5	0.0219	NEUTRAL	NA	1	MON2
TCGA.AA.A00L.01A	12	62986319	63964487	8	-0.3993	NEUTRAL	NA	4	"AVPR1A,DPY19L2,MON2,PPM1H"
TCGA.DM.A1DB	12	63238591	63895153	264	-0.0204	NEUTRAL	NA	2	"AVPR1A,PPM1H"
TCGA.AA.3850	12	63335312	63446416	51	-0.49175	NEUTRAL	NA	0	None
TCGA.AA.3850	12	63455346	64454526	246	-0.13915	NEUTRAL	NA	4	"AVPR1A,DPY19L2,SRGAP1,TMEM5"
TCGA.AA.3841	12	63628263	133777644	22713	0.0172	NEUTRAL	NA	413	Too-Many
TCGA.AG.A01W.01A	12	63742485	64507995	27	0.1169	NEUTRAL	NA	3	"DPY19L2,SRGAP1,TMEM5"
TCGA.G5.6233	12	63753383	133777644	22669	-0.1428	NEUTRAL	NA	413	Too-Many
TCGA.AA.A00L.01A	12	64055077	95867939	888	-0.0504	NEUTRAL	NA	123	Too-Many
TCGA.AA.3861.01A	12	64061877	69050844	236	0.3204	NEUTRAL	NA	27	"C12orf56,C12orf66,CAND1,DPY19L2,DYRK2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LEMD3,LLPH,LOC100129940,MDM1,MSRB3,RAP1B,RASSF3,SRGAP1,TBC1D30,TBK1,TMBIM4,TMEM5,WIF1,XPOT"
TCGA.AA.3862.01A	12	64061877	69050844	236	0.0034	NEUTRAL	NA	27	"C12orf56,C12orf66,CAND1,DPY19L2,DYRK2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LEMD3,LLPH,LOC100129940,MDM1,MSRB3,RAP1B,RASSF3,SRGAP1,TBC1D30,TBK1,TMBIM4,TMEM5,WIF1,XPOT"
TCGA.AU.3779	12	64174679	133777644	22578	-0.3315	NEUTRAL	NA	412	Too-Many
TCGA.AZ.4684.01A	12	64202405	64858102	60	-0.2792	NEUTRAL	NA	6	"C12orf56,C12orf66,SRGAP1,TBK1,TMEM5,XPOT"
TCGA.AA.3930.01A	12	64410705	64609461	19	-0.1629	NEUTRAL	NA	2	"C12orf66,SRGAP1"
TCGA.AA.A01C.01A	12	64436568	64811764	34	0.1331	NEUTRAL	NA	4	"C12orf56,C12orf66,SRGAP1,XPOT"
TCGA.AG.A01W.01A	12	64518504	67565792	156	-0.4072	NEUTRAL	NA	18	"C12orf56,C12orf66,GNS,GRIP1,HELB,HMGA2,IRAK3,LEMD3,LLPH,LOC100129940,MSRB3,RASSF3,SRGAP1,TBC1D30,TBK1,TMBIM4,WIF1,XPOT"
TCGA.AG.3909.01A	12	64587621	64615736	3	-0.3345	NEUTRAL	NA	1	C12orf66
TCGA.AA.A00N.01A	12	64587621	64746634	13	0.1657	NEUTRAL	NA	2	"C12orf56,C12orf66"
TCGA.CK.5914.01A	12	64587621	64784044	14	-0.054	NEUTRAL	NA	2	"C12orf56,C12orf66"
TCGA.AA.A00F.01A	12	64587621	64858102	27	0.3098	NEUTRAL	NA	4	"C12orf56,C12orf66,TBK1,XPOT"
TCGA.AA.3930.01A	12	64615736	65449801	75	0.2325	NEUTRAL	NA	8	"C12orf56,C12orf66,GNS,RASSF3,TBC1D30,TBK1,WIF1,XPOT"
TCGA.BM.6198	12	64634600	83324053	5855	-0.45515	NEUTRAL	NA	77	"ACSS3,ATXN7L3B,BBS10,BEST3,C12orf56,CAND1,CAPS2,CCDC59,CCT2,CNOT2,CPM,CPSF6,CSRP2,DYRK2,E2F7,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNC2,KCNMB4,KRR1,LEMD3,LGR5,LIN7A,LLPH,LOC100129940,LRRC10,LYZ,MDM1,MDM2,METTL25,MSRB3,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,SLC35E3,SYT1,TBC1D15,TBC1D30,TBK1,THAP2,TMBIM4,TMEM19,TMTC2,TPH2,TRHDE,TSPAN8,WIF1,XPOT,YEATS4,ZDHHC17,ZFC3H1"
TCGA.AG.A00C.01A	12	64671423	64858102	32	0.3452	NEUTRAL	NA	3	"C12orf56,TBK1,XPOT"
TCGA.AA.3967.01A	12	64679706	65016236	46	0.348	NEUTRAL	NA	4	"C12orf56,RASSF3,TBK1,XPOT"
TCGA.AG.A014.01A	12	64724680	64849603	26	-0.0942	NEUTRAL	NA	3	"C12orf56,TBK1,XPOT"
TCGA.AG.3906.01A	12	64746634	64828527	20	0.3491	NEUTRAL	NA	2	"C12orf56,XPOT"
TCGA.AG.3909.01A	12	64810465	64838782	19	-0.3012	NEUTRAL	NA	1	XPOT
TCGA.CK.5914.01A	12	64812615	64829329	15	-0.1331	NEUTRAL	NA	1	XPOT
TCGA.AG.3906.01A	12	64829329	66610894	85	-0.0056	NEUTRAL	NA	13	"GNS,HMGA2,IRAK3,LEMD3,LLPH,LOC100129940,MSRB3,RASSF3,TBC1D30,TBK1,TMBIM4,WIF1,XPOT"
TCGA.AA.A01C.01A	12	64858102	68696388	149	0.0376	NEUTRAL	NA	20	"CAND1,DYRK2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LEMD3,LLPH,LOC100129940,MDM1,MSRB3,RASSF3,TBC1D30,TBK1,TMBIM4,WIF1"
TCGA.AA.A00F.01A	12	64860679	65856888	64	-0.0978	NEUTRAL	NA	7	"GNS,LEMD3,MSRB3,RASSF3,TBC1D30,TBK1,WIF1"
TCGA.AZ.4684.01A	12	64860679	68720219	164	0.3524	NEUTRAL	NA	20	"CAND1,DYRK2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LEMD3,LLPH,LOC100129940,MDM1,MSRB3,RASSF3,TBC1D30,TBK1,TMBIM4,WIF1"
TCGA.AG.A00C.01A	12	64860679	70091389	259	-0.087	NEUTRAL	NA	32	"BEST3,CAND1,CCT2,CPM,CPSF6,DYRK2,FRS2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LEMD3,LLPH,LOC100129940,LRRC10,LYZ,MDM1,MDM2,MSRB3,NUP107,RAP1B,RASSF3,SLC35E3,TBC1D30,TBK1,TMBIM4,WIF1,YEATS4"
TCGA.AG.4009.01A	12	64868002	65471478	41	-0.0333	NEUTRAL	NA	5	"GNS,RASSF3,TBC1D30,TBK1,WIF1"
TCGA.AG.3909.01A	12	64868002	66517568	65	0.2204	NEUTRAL	NA	10	"GNS,HMGA2,LEMD3,LLPH,LOC100129940,MSRB3,RASSF3,TBC1D30,TBK1,WIF1"
TCGA.CK.5914.01A	12	64868002	66517568	69	0.166	NEUTRAL	NA	10	"GNS,HMGA2,LEMD3,LLPH,LOC100129940,MSRB3,RASSF3,TBC1D30,TBK1,WIF1"
TCGA.AA.A010.01A	12	64883773	65856888	56	0.2669	NEUTRAL	NA	7	"GNS,LEMD3,MSRB3,RASSF3,TBC1D30,TBK1,WIF1"
TCGA.AA.3967.01A	12	65078520	66547073	55	-0.083	NEUTRAL	NA	10	"GNS,HMGA2,LEMD3,LLPH,LOC100129940,MSRB3,RASSF3,TBC1D30,TMBIM4,WIF1"
TCGA.AA.3850	12	65271763	65732300	126	-0.09995	NEUTRAL	NA	4	"LEMD3,MSRB3,TBC1D30,WIF1"
TCGA.AA.3930.01A	12	65456212	105550967	1914	-0.0431	NEUTRAL	NA	170	Too-Many
TCGA.AA.A02H.01A	12	65456212	108941624	1972	0.1275	NEUTRAL	NA	189	Too-Many
TCGA.AG.4009.01A	12	65604633	66547073	27	-0.3116	NEUTRAL	NA	6	"HMGA2,LEMD3,LLPH,LOC100129940,MSRB3,TMBIM4"
TCGA.AA.3850	12	65759521	66979711	380	0.00275	NEUTRAL	NA	8	"GRIP1,HELB,HMGA2,IRAK3,LLPH,LOC100129940,MSRB3,TMBIM4"
TCGA.AA.A010.01A	12	66218999	66563586	15	-0.3309	NEUTRAL	NA	4	"HMGA2,LLPH,LOC100129940,TMBIM4"
TCGA.AA.A00F.01A	12	66221737	66641448	15	0.27	NEUTRAL	NA	5	"HMGA2,IRAK3,LLPH,LOC100129940,TMBIM4"
TCGA.AG.A00H.01A	12	66221737	66773013	41	-0.1993	NEUTRAL	NA	7	"GRIP1,HELB,HMGA2,IRAK3,LLPH,LOC100129940,TMBIM4"
TCGA.A6.3808.01A	12	66547073	70188872	200	0.1926	NEUTRAL	NA	23	"BEST3,CAND1,CCT2,CPM,CPSF6,DYRK2,FRS2,GRIP1,HELB,IFNG,IL22,IL26,IRAK3,LRRC10,LYZ,MDM1,MDM2,NUP107,RAB3IP,RAP1B,SLC35E3,TMBIM4,YEATS4"
TCGA.AG.3909.01A	12	66597474	66641448	10	-0.248	NEUTRAL	NA	1	IRAK3
TCGA.AA.3967.01A	12	66597474	66787957	31	0.2878	NEUTRAL	NA	3	"GRIP1,HELB,IRAK3"
TCGA.AA.A010.01A	12	66696335	67706344	51	0.3145	NEUTRAL	NA	3	"CAND1,GRIP1,HELB"
TCGA.CK.5914.01A	12	66696335	68709821	72	0.1195	NEUTRAL	NA	8	"CAND1,DYRK2,GRIP1,HELB,IFNG,IL22,IL26,MDM1"
TCGA.AA.A00F.01A	12	66696335	76424299	309	-0.0401	NEUTRAL	NA	43	"ATXN7L3B,BEST3,CAND1,CAPS2,CCT2,CNOT2,CPM,CPSF6,DYRK2,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,GRIP1,HELB,IFNG,IL22,IL26,KCNC2,KCNMB4,KRR1,LGR5,LRRC10,LYZ,MDM1,MDM2,MYRFL,NUP107,PHLDA1,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,SLC35E3,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,YEATS4,ZFC3H1"
TCGA.AG.3906.01A	12	66696335	80665391	565	-0.0617	NEUTRAL	NA	54	"ATXN7L3B,BBS10,BEST3,CAND1,CAPS2,CCT2,CNOT2,CPM,CPSF6,CSRP2,DYRK2,E2F7,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,GRIP1,HELB,IFNG,IL22,IL26,KCNC2,KCNMB4,KRR1,LGR5,LRRC10,LYZ,MDM1,MDM2,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPP1R12A,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,SLC35E3,SYT1,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,YEATS4,ZDHHC17,ZFC3H1"
TCGA.AG.4009.01A	12	66696335	104496700	1685	-0.0904	NEUTRAL	NA	154	Too-Many
TCGA.AF.6655	12	66770378	67488531	319	-0.509	NEUTRAL	NA	1	GRIP1
TCGA.AG.A00H.01A	12	66786076	68696388	48	0.3602	NEUTRAL	NA	7	"CAND1,DYRK2,GRIP1,IFNG,IL22,IL26,MDM1"
TCGA.AA.3967.01A	12	66800011	99175812	1200	-0.0495	NEUTRAL	NA	120	Too-Many
TCGA.AA.3850	12	66979949	67636060	318	-0.44905	NEUTRAL	NA	1	GRIP1
TCGA.CA.6716	12	67206669	75633500	2823	-0.0097	NEUTRAL	NA	35	"ATXN7L3B,BEST3,CAND1,CCT2,CNOT2,CPM,CPSF6,DYRK2,FRS2,IFNG,IL22,IL26,KCNC2,KCNMB4,LGR5,LRRC10,LYZ,MDM1,MDM2,MYRFL,NUP107,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,SLC35E3,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,YEATS4,ZFC3H1"
TCGA.AG.4008	12	67276201	71223605	1584	-0.0614	NEUTRAL	NA	24	"BEST3,CAND1,CCT2,CNOT2,CPM,CPSF6,DYRK2,FRS2,IFNG,IL22,IL26,KCNMB4,LRRC10,LYZ,MDM1,MDM2,MYRFL,NUP107,PTPRB,PTPRR,RAB3IP,RAP1B,SLC35E3,YEATS4"
TCGA.G4.6299	12	67291484	129105436	19942	-0.0353	NEUTRAL	NA	360	Too-Many
TCGA.EI.6508	12	67375016	133777644	21665	0.0018	NEUTRAL	NA	393	Too-Many
TCGA.AF.6655	12	67493176	133777644	21577	-0.0137	NEUTRAL	NA	393	Too-Many
TCGA.AA.3850	12	67644729	68738673	502	-0.10715	NEUTRAL	NA	6	"CAND1,DYRK2,IFNG,IL22,IL26,MDM1"
TCGA.AG.3909.01A	12	67675699	68549086	17	0.1028	NEUTRAL	NA	3	"CAND1,DYRK2,IFNG"
TCGA.AA.3989	12	67705911	83845663	5043	-0.0271	NEUTRAL	NA	61	"ACSS3,ATXN7L3B,BBS10,BEST3,CAND1,CAPS2,CCDC59,CCT2,CNOT2,CPM,CPSF6,CSRP2,DYRK2,E2F7,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,IFNG,IL22,IL26,KCNC2,KCNMB4,KRR1,LGR5,LIN7A,LRRC10,LYZ,MDM1,MDM2,METTL25,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RAP1B,SLC35E3,SYT1,TBC1D15,THAP2,TMEM19,TMTC2,TPH2,TRHDE,TSPAN8,YEATS4,ZDHHC17,ZFC3H1"
TCGA.AG.A01W.01A	12	67933052	68377657	48	-0.3296	NEUTRAL	NA	1	DYRK2
TCGA.AG.A01W.01A	12	68464728	68999292	10	-0.0526	NEUTRAL	NA	4	"IFNG,IL22,IL26,MDM1"
TCGA.AA.3660	12	68652531	73604503	1686	0.0107	NEUTRAL	NA	28	"BEST3,CCT2,CNOT2,CPM,CPSF6,FRS2,KCNMB4,LGR5,LRRC10,LYZ,MDM1,MDM2,MYRFL,NUP107,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,SLC35E3,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,YEATS4,ZFC3H1"
TCGA.AG.3909.01A	12	68696388	68708769	3	-0.1102	NEUTRAL	NA	1	MDM1
TCGA.AG.A00H.01A	12	68707226	69979987	88	-0.4001	NEUTRAL	NA	11	"CCT2,CPM,CPSF6,FRS2,LYZ,MDM1,MDM2,NUP107,RAP1B,SLC35E3,YEATS4"
TCGA.AA.A01C.01A	12	68707226	69981273	89	-0.3326	NEUTRAL	NA	11	"CCT2,CPM,CPSF6,FRS2,LYZ,MDM1,MDM2,NUP107,RAP1B,SLC35E3,YEATS4"
TCGA.AA.3509.01A	12	68724860	70149156	109	-0.2223	NEUTRAL	NA	14	"BEST3,CCT2,CPM,CPSF6,FRS2,LRRC10,LYZ,MDM1,MDM2,NUP107,RAB3IP,RAP1B,SLC35E3,YEATS4"
TCGA.AZ.4684.01A	12	68724860	70149156	109	-0.182	NEUTRAL	NA	14	"BEST3,CCT2,CPM,CPSF6,FRS2,LRRC10,LYZ,MDM1,MDM2,NUP107,RAB3IP,RAP1B,SLC35E3,YEATS4"
TCGA.CK.5914.01A	12	68725916	69125336	27	-0.0023	NEUTRAL	NA	3	"MDM1,NUP107,RAP1B"
TCGA.AA.3850	12	68739118	70156050	498	0.23745	NEUTRAL	NA	13	"BEST3,CCT2,CPM,CPSF6,FRS2,LRRC10,LYZ,MDM2,NUP107,RAB3IP,RAP1B,SLC35E3,YEATS4"
TCGA.AA.3693	12	68810009	126841608	18067	-0.0031	NEUTRAL	NA	353	Too-Many
TCGA.AA.3544	12	68841275	80968399	3699	-0.0061	NEUTRAL	NA	47	"ATXN7L3B,BBS10,BEST3,CAPS2,CCT2,CNOT2,CPM,CPSF6,CSRP2,E2F7,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KRR1,LGR5,LRRC10,LYZ,MDM2,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RAP1B,SLC35E3,SYT1,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,YEATS4,ZDHHC17,ZFC3H1"
TCGA.AG.A01W.01A	12	69022099	82050073	559	-0.1419	NEUTRAL	NA	52	"ACSS3,ATXN7L3B,BBS10,BEST3,CAPS2,CCT2,CNOT2,CPM,CPSF6,CSRP2,E2F7,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KRR1,LGR5,LIN7A,LRRC10,LYZ,MDM2,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RAP1B,SLC35E3,SYT1,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,YEATS4,ZDHHC17,ZFC3H1"
TCGA.AG.3909.01A	12	69042462	69115591	21	0.3704	NEUTRAL	NA	2	"NUP107,RAP1B"
TCGA.AA.3861.01A	12	69080748	83324172	644	0.0027	NEUTRAL	NA	54	"ACSS3,ATXN7L3B,BBS10,BEST3,CAPS2,CCDC59,CCT2,CNOT2,CPM,CPSF6,CSRP2,E2F7,FRS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KRR1,LGR5,LIN7A,LRRC10,LYZ,MDM2,METTL25,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NUP107,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,SLC35E3,SYT1,TBC1D15,THAP2,TMEM19,TMTC2,TPH2,TRHDE,TSPAN8,YEATS4,ZDHHC17,ZFC3H1"
TCGA.AA.3862.01A	12	69080748	112479774	2490	-0.26	NEUTRAL	NA	221	Too-Many
TCGA.AG.3909.01A	12	69119485	69218090	22	-0.418	NEUTRAL	NA	3	"MDM2,NUP107,SLC35E3"
TCGA.AA.A00A.01A	12	69250167	120151975	2276	0.0531	NEUTRAL	NA	263	Too-Many
TCGA.AA.A010.01A	12	69326418	69962744	21	-0.461	NEUTRAL	NA	5	"CPM,CPSF6,FRS2,LYZ,YEATS4"
TCGA.AG.3909.01A	12	69326418	69994989	38	-0.4876	NEUTRAL	NA	6	"CCT2,CPM,CPSF6,FRS2,LYZ,YEATS4"
TCGA.EI.7004	12	69468329	70543231	435	0.304	NEUTRAL	NA	9	"BEST3,CCT2,CPSF6,FRS2,LRRC10,LYZ,MYRFL,RAB3IP,YEATS4"
TCGA.AA.3846	12	69484228	70064145	233	-0.4488	NEUTRAL	NA	7	"BEST3,CCT2,CPSF6,FRS2,LRRC10,LYZ,YEATS4"
TCGA.D5.5539	12	69905128	70156050	113	-0.3676	NEUTRAL	NA	5	"BEST3,CCT2,FRS2,LRRC10,RAB3IP"
TCGA.DM.A1DB	12	69927855	133777644	20652	-0.0239	NEUTRAL	NA	379	Too-Many
TCGA.AG.A00H.01A	12	69980479	82748227	488	0.1245	NEUTRAL	NA	44	"ACSS3,ATXN7L3B,BBS10,BEST3,CAPS2,CCDC59,CCT2,CNOT2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KRR1,LGR5,LIN7A,LRRC10,MYF5,MYF6,MYRFL,NAP1L1,NAV3,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,SYT1,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,ZDHHC17,ZFC3H1"
TCGA.AA.A01C.01A	12	69981652	109717449	1901	0.0799	NEUTRAL	NA	176	Too-Many
TCGA.AG.A014.01A	12	70065169	70133552	8	0.3399	NEUTRAL	NA	2	"BEST3,RAB3IP"
TCGA.AA.3846	12	70066279	133777644	20565	-0.0031	NEUTRAL	NA	376	Too-Many
TCGA.D5.5539	12	70180359	133777644	20515	-0.029	NEUTRAL	NA	375	Too-Many
TCGA.AA.A010.01A	12	70193938	70704628	6	0.3023	NEUTRAL	NA	3	"CNOT2,MYRFL,RAB3IP"
TCGA.AA.3850	12	70236491	70401148	93	0.20595	NEUTRAL	NA	1	MYRFL
TCGA.CK.4952.01A	12	70315438	91846865	689	0.1165	NEUTRAL	NA	64	"ACSS3,ALX1,ATP2B1,ATXN7L3B,BBS10,C12orf29,C12orf50,CAPS2,CCDC59,CCER1,CEP290,CNOT2,CSRP2,DCN,DUSP6,E2F7,EPYC,GALNT4,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KERA,KITLG,KRR1,LGR5,LIN7A,LRRIQ1,LUM,METTL25,MGAT4C,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NTS,OSBPL8,OTOGL,PAWR,PHLDA1,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RASSF9,SLC6A15,SYT1,TBC1D15,THAP2,TMEM19,TMTC2,TMTC3,TPH2,TRHDE,TSPAN19,TSPAN8,ZDHHC17,ZFC3H1"
TCGA.AA.3850	12	70403305	70669547	73	-0.20655	NEUTRAL	NA	1	CNOT2
TCGA.EI.7004	12	70554994	87670212	4745	-0.0962	NEUTRAL	NA	48	"ACSS3,ALX1,ATXN7L3B,BBS10,CAPS2,CCDC59,CNOT2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KRR1,LGR5,LIN7A,LRRIQ1,METTL25,MGAT4C,MYF5,MYF6,NAP1L1,NAV3,NTS,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RASSF9,SLC6A15,SYT1,TBC1D15,THAP2,TMEM19,TMTC2,TPH2,TRHDE,TSPAN19,TSPAN8,ZDHHC17,ZFC3H1"
TCGA.AA.A00N.01A	12	70671933	70793937	15	-0.3901	NEUTRAL	NA	2	"CNOT2,KCNMB4"
TCGA.AG.3909.01A	12	70671933	72058226	116	0.2616	NEUTRAL	NA	8	"CNOT2,KCNMB4,LGR5,PTPRB,PTPRR,THAP2,TSPAN8,ZFC3H1"
TCGA.AG.A00C.01A	12	70671933	72058226	116	-0.1818	NEUTRAL	NA	8	"CNOT2,KCNMB4,LGR5,PTPRB,PTPRR,THAP2,TSPAN8,ZFC3H1"
TCGA.AA.3850	12	70674654	71095450	173	-0.00335	NEUTRAL	NA	4	"CNOT2,KCNMB4,PTPRB,PTPRR"
TCGA.CK.5914.01A	12	70732185	72041465	105	0.2037	NEUTRAL	NA	7	"CNOT2,KCNMB4,LGR5,PTPRB,PTPRR,TSPAN8,ZFC3H1"
TCGA.AA.A010.01A	12	70793937	70918199	4	-0.1504	NEUTRAL	NA	2	"KCNMB4,PTPRB"
TCGA.AA.A010.01A	12	70946529	70949618	3	0.1904	NEUTRAL	NA	1	PTPRB
TCGA.AA.A010.01A	12	70953115	71960143	49	-0.1049	NEUTRAL	NA	4	"LGR5,PTPRB,PTPRR,TSPAN8"
TCGA.AG.4008	12	71226783	71864844	232	-0.4768	NEUTRAL	NA	3	"LGR5,PTPRR,TSPAN8"
TCGA.AA.3941	12	71282385	76056024	1300	-0.4165	NEUTRAL	NA	17	"ATXN7L3B,CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,LGR5,PTPRR,RAB21,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,ZFC3H1"
TCGA.AA.3982	12	71357538	72742655	433	-0.2876	NEUTRAL	NA	9	"LGR5,RAB21,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,ZFC3H1"
TCGA.AA.A00N.01A	12	71519044	71833844	8	-0.1859	NEUTRAL	NA	2	"LGR5,TSPAN8"
TCGA.AG.A01Y	12	71686652	133777644	19898	-0.0117	NEUTRAL	NA	368	Too-Many
TCGA.AF.A56K	12	71808005	133777644	19869	-0.0364	NEUTRAL	NA	368	Too-Many
TCGA.QL.A97D	12	71814619	133777644	19912	0.0924	NEUTRAL	NA	368	Too-Many
TCGA.AG.4008	12	71869890	78640350	2024	0.0301	NEUTRAL	NA	23	"ATXN7L3B,BBS10,CAPS2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,LGR5,NAP1L1,NAV3,OSBPL8,PHLDA1,RAB21,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,ZDHHC17,ZFC3H1"
TCGA.AG.A00C.01A	12	72067981	72167694	11	0.2762	NEUTRAL	NA	3	"RAB21,THAP2,TMEM19"
TCGA.AG.3909.01A	12	72090179	72175747	8	-0.1892	NEUTRAL	NA	2	"RAB21,TMEM19"
TCGA.CK.5914.01A	12	72167694	75685464	64	0.2596	NEUTRAL	NA	7	"ATXN7L3B,CAPS2,KCNC2,RAB21,TBC1D15,TPH2,TRHDE"
TCGA.AG.A00C.01A	12	72175747	76442130	91	-0.2512	NEUTRAL	NA	13	"ATXN7L3B,CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,NAP1L1,PHLDA1,RAB21,TBC1D15,TPH2,TRHDE"
TCGA.AA.A010.01A	12	72175747	80648814	258	0.0147	NEUTRAL	NA	23	"ATXN7L3B,BBS10,CAPS2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,NAP1L1,NAV3,OSBPL8,OTOGL,PAWR,PHLDA1,PPP1R12A,RAB21,SYT1,TBC1D15,TPH2,TRHDE,ZDHHC17"
TCGA.AG.3909.01A	12	72176295	75444720	54	0.3363	NEUTRAL	NA	6	"ATXN7L3B,KCNC2,RAB21,TBC1D15,TPH2,TRHDE"
TCGA.AG.3591	12	72361407	75242260	714	-0.1993	NEUTRAL	NA	3	"ATXN7L3B,TPH2,TRHDE"
TCGA.AA.3811	12	72394298	76043061	923	-0.5125	NEUTRAL	NA	9	"ATXN7L3B,CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,TPH2,TRHDE"
TCGA.AA.3844	12	72413008	76043061	909	-0.0106	NEUTRAL	NA	9	"ATXN7L3B,CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,TPH2,TRHDE"
TCGA.DY.A1DC	12	73090373	73417262	76	0.0316	NEUTRAL	NA	0	None
TCGA.G5.6641	12	73275078	133777644	19473	0.0211	NEUTRAL	NA	360	Too-Many
TCGA.DY.A1DC	12	73449363	75146984	378	0.0489	NEUTRAL	NA	1	ATXN7L3B
TCGA.AA.3660	12	73617279	75849109	530	0.3745	NEUTRAL	NA	5	"ATXN7L3B,CAPS2,GLIPR1L1,GLIPR1L2,KCNC2"
TCGA.AA.3870	12	73732984	83845663	2907	-0.0671	NEUTRAL	NA	28	"ACSS3,ATXN7L3B,BBS10,CAPS2,CCDC59,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,LIN7A,METTL25,MYF5,MYF6,NAP1L1,NAV3,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRQ,SYT1,TMTC2,ZDHHC17"
TCGA.DY.A1DC	12	75168410	75547077	107	0.0922	NEUTRAL	NA	1	KCNC2
TCGA.AG.3591	12	75255087	75633500	112	0.2003	NEUTRAL	NA	1	KCNC2
TCGA.DY.A1DC	12	75598779	78909651	1158	0.0379	NEUTRAL	NA	14	"BBS10,CAPS2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,NAP1L1,NAV3,OSBPL8,PHLDA1,ZDHHC17"
TCGA.AG.3909.01A	12	75601055	75683380	5	-0.0578	NEUTRAL	NA	2	"CAPS2,KCNC2"
TCGA.AG.3591	12	75636465	79253403	1231	-0.1982	NEUTRAL	NA	13	"BBS10,CAPS2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KRR1,NAP1L1,NAV3,OSBPL8,PHLDA1,ZDHHC17"
TCGA.AG.3909.01A	12	75728482	75905245	23	0.2689	NEUTRAL	NA	5	"CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KRR1"
TCGA.CK.5914.01A	12	75741351	76461099	33	0.303	NEUTRAL	NA	7	"CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KRR1,NAP1L1,PHLDA1"
TCGA.AA.3660	12	75850084	87043047	3152	-0.0108	NEUTRAL	NA	30	"ACSS3,ALX1,BBS10,CCDC59,CSRP2,E2F7,GLIPR1,KRR1,LIN7A,LRRIQ1,METTL25,MGAT4C,MYF5,MYF6,NAP1L1,NAV3,NTS,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SYT1,TMTC2,TSPAN19,ZDHHC17"
TCGA.AA.3850	12	75903190	76291887	180	-0.30495	NEUTRAL	NA	1	KRR1
TCGA.AA.3811	12	76045410	76672816	259	0.1867	NEUTRAL	NA	2	"NAP1L1,PHLDA1"
TCGA.AA.3982	12	76057631	77492337	458	0.016	NEUTRAL	NA	7	"BBS10,CSRP2,E2F7,NAP1L1,OSBPL8,PHLDA1,ZDHHC17"
TCGA.AA.3941	12	76057631	77505360	462	0.2474	NEUTRAL	NA	7	"BBS10,CSRP2,E2F7,NAP1L1,OSBPL8,PHLDA1,ZDHHC17"
TCGA.AA.3844	12	76288991	76291887	4	0.1127	NEUTRAL	NA	0	None
TCGA.AA.3872	12	76291555	83856695	2208	-0.1051	NEUTRAL	NA	21	"ACSS3,BBS10,CCDC59,CSRP2,E2F7,LIN7A,METTL25,MYF5,MYF6,NAP1L1,NAV3,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRQ,SYT1,TMTC2,ZDHHC17"
TCGA.AA.3850	12	76295969	76723616	144	0.22515	NEUTRAL	NA	2	"NAP1L1,PHLDA1"
TCGA.AG.3611.01A	12	76424299	76467934	14	-0.3975	NEUTRAL	NA	2	"NAP1L1,PHLDA1"
TCGA.AG.3909.01A	12	76424299	76467934	14	-0.3322	NEUTRAL	NA	2	"NAP1L1,PHLDA1"
TCGA.AA.A00F.01A	12	76442130	76467934	13	0.2759	NEUTRAL	NA	1	NAP1L1
TCGA.AG.A00C.01A	12	76442918	76467934	12	0.232	NEUTRAL	NA	1	NAP1L1
TCGA.AA.3502	12	76444509	133777644	18606	0.0375	NEUTRAL	NA	352	Too-Many
TCGA.AA.3811	12	76676533	83845663	2068	-0.3091	NEUTRAL	NA	19	"ACSS3,BBS10,CCDC59,CSRP2,E2F7,LIN7A,METTL25,MYF5,MYF6,NAV3,OSBPL8,OTOGL,PAWR,PPFIA2,PPP1R12A,PTPRQ,SYT1,TMTC2,ZDHHC17"
TCGA.AG.3909.01A	12	76739552	88391762	329	0.1855	NEUTRAL	NA	27	"ACSS3,ALX1,BBS10,C12orf50,CCDC59,CSRP2,E2F7,LIN7A,LRRIQ1,METTL25,MGAT4C,MYF5,MYF6,NAV3,NTS,OSBPL8,OTOGL,PAWR,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SYT1,TMTC2,TSPAN19,ZDHHC17"
TCGA.AG.3611.01A	12	76739552	95867939	399	0.2009	NEUTRAL	NA	61	"ACSS3,ALX1,ATP2B1,BBS10,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC59,CCER1,CEP290,CEP83,CLLU1,CLLU1OS,CRADD,CSRP2,DCN,DUSP6,E2F7,EEA1,EPYC,FGD6,GALNT4,KERA,KITLG,LIN7A,LRRIQ1,LUM,METAP2,METTL25,MGAT4C,MRPL42,MYF5,MYF6,NAV3,NDUFA12,NR2C1,NTS,NUDT4,OSBPL8,OTOGL,PAWR,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SOCS2,SYT1,TMCC3,TMTC2,TMTC3,TSPAN19,UBE2N,VEZT,ZDHHC17"
TCGA.AG.A00C.01A	12	76739552	96273370	645	-0.1943	NEUTRAL	NA	65	"ACSS3,ALX1,ATP2B1,BBS10,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC38,CCDC59,CCER1,CEP290,CEP83,CLLU1,CLLU1OS,CRADD,CSRP2,DCN,DUSP6,E2F7,EEA1,EPYC,FGD6,GALNT4,KERA,KITLG,LIN7A,LRRIQ1,LUM,METAP2,METTL25,MGAT4C,MRPL42,MYF5,MYF6,NAV3,NDUFA12,NR2C1,NTN4,NTS,NUDT4,OSBPL8,OTOGL,PAWR,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SNRPF,SOCS2,SYT1,TMCC3,TMTC2,TMTC3,TSPAN19,UBE2N,USP44,VEZT,ZDHHC17"
TCGA.AA.A00F.01A	12	76739552	96275201	431	-0.1128	NEUTRAL	NA	65	"ACSS3,ALX1,ATP2B1,BBS10,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC38,CCDC59,CCER1,CEP290,CEP83,CLLU1,CLLU1OS,CRADD,CSRP2,DCN,DUSP6,E2F7,EEA1,EPYC,FGD6,GALNT4,KERA,KITLG,LIN7A,LRRIQ1,LUM,METAP2,METTL25,MGAT4C,MRPL42,MYF5,MYF6,NAV3,NDUFA12,NR2C1,NTN4,NTS,NUDT4,OSBPL8,OTOGL,PAWR,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SNRPF,SOCS2,SYT1,TMCC3,TMTC2,TMTC3,TSPAN19,UBE2N,USP44,VEZT,ZDHHC17"
TCGA.CK.5914.01A	12	76741904	77191164	26	0.1808	NEUTRAL	NA	3	"BBS10,OSBPL8,ZDHHC17"
TCGA.CA.6716	12	76786348	91789655	3946	-0.2862	NEUTRAL	NA	40	"ACSS3,ALX1,ATP2B1,C12orf29,C12orf50,CCDC59,CCER1,CEP290,CSRP2,DCN,DUSP6,E2F7,EPYC,GALNT4,KERA,KITLG,LIN7A,LRRIQ1,LUM,METTL25,MGAT4C,MYF5,MYF6,NAV3,NTS,OSBPL8,OTOGL,PAWR,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SYT1,TMTC2,TMTC3,TSPAN19,ZDHHC17"
TCGA.AA.3850	12	76825825	77315272	102	0.14535	NEUTRAL	NA	3	"CSRP2,OSBPL8,ZDHHC17"
TCGA.CK.5914.01A	12	77253272	77423564	8	0.199	NEUTRAL	NA	2	"CSRP2,E2F7"
TCGA.AA.3850	12	77319054	77505360	82	-0.18985	NEUTRAL	NA	1	E2F7
TCGA.AA.3844	12	77442003	79214455	665	0.0727	NEUTRAL	NA	2	"E2F7,NAV3"
TCGA.AA.3982	12	77494858	83845663	1859	-0.4611	NEUTRAL	NA	14	"ACSS3,CCDC59,LIN7A,METTL25,MYF5,MYF6,NAV3,OTOGL,PAWR,PPFIA2,PPP1R12A,PTPRQ,SYT1,TMTC2"
TCGA.AA.3941	12	77511308	83845663	1855	-0.3675	NEUTRAL	NA	14	"ACSS3,CCDC59,LIN7A,METTL25,MYF5,MYF6,NAV3,OTOGL,PAWR,PPFIA2,PPP1R12A,PTPRQ,SYT1,TMTC2"
TCGA.D5.6532	12	77634904	133777644	18278	-0.0189	NEUTRAL	NA	346	Too-Many
TCGA.CK.5914.01A	12	78225191	78520866	18	0.1608	NEUTRAL	NA	1	NAV3
TCGA.AF.3911	12	78396275	79394992	306	-0.3819	NEUTRAL	NA	2	"NAV3,SYT1"
TCGA.AA.3509.01A	12	78593098	80184269	23	0.1201	NEUTRAL	NA	4	"NAV3,PAWR,PPP1R12A,SYT1"
TCGA.CK.4948.01B	12	78604161	102576310	1088	0.2564	NEUTRAL	NA	93	"ACSS3,ACTR6,ALX1,AMDHD1,ANKS1B,ANO4,APAF1,ARL1,ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC38,CCDC53,CCDC59,CCER1,CDK17,CEP290,CEP83,CFAP54,CHPT1,CLLU1,CLLU1OS,CRADD,DCN,DEPDC4,DRAM1,DUSP6,EEA1,ELK3,EPYC,FAM71C,FGD6,GALNT4,GAS2L3,GNPTAB,HAL,IKBIP,KERA,KITLG,LIN7A,LRRIQ1,LTA4H,LUM,METAP2,METTL25,MGAT4C,MRPL42,MYBPC1,MYF5,MYF6,NAV3,NDUFA12,NEDD1,NR1H4,NR2C1,NTN4,NTS,NUDT4,NUP37,OTOGL,PARPBP,PAWR,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SCYL2,SLC17A8,SLC25A3,SLC5A8,SLC6A15,SNRPF,SOCS2,SPIC,SYCP3,SYT1,TMCC3,TMPO,TMTC2,TMTC3,TSPAN19,UBE2N,UHRF1BP1L,USP44,UTP20,VEZT"
TCGA.DY.A1DC	12	78959254	80834658	437	0.0291	NEUTRAL	NA	4	"OTOGL,PAWR,PPP1R12A,SYT1"
TCGA.CA.6715	12	79109020	80014372	222	0.0057	NEUTRAL	NA	2	"PAWR,SYT1"
TCGA.A6.A56B	12	79133646	133777644	17625	-0.4502	NEUTRAL	NA	345	Too-Many
TCGA.AA.3844	12	79237678	82447767	852	0.1187	NEUTRAL	NA	10	"ACSS3,LIN7A,MYF5,MYF6,OTOGL,PAWR,PPFIA2,PPP1R12A,PTPRQ,SYT1"
TCGA.AG.3591	12	79260006	79442836	53	0.198	NEUTRAL	NA	1	SYT1
TCGA.AF.3911	12	79398100	133777644	17655	-0.0145	NEUTRAL	NA	345	Too-Many
TCGA.AG.3591	12	79449406	82919863	903	-0.181	NEUTRAL	NA	12	"ACSS3,CCDC59,LIN7A,METTL25,MYF5,MYF6,OTOGL,PAWR,PPFIA2,PPP1R12A,PTPRQ,SYT1"
TCGA.A6.2678	12	79522623	83268607	965	0.037	NEUTRAL	NA	13	"ACSS3,CCDC59,LIN7A,METTL25,MYF5,MYF6,OTOGL,PAWR,PPFIA2,PPP1R12A,PTPRQ,SYT1,TMTC2"
TCGA.F5.6811.01A	12	79537277	132288755	3835	0.0098	NEUTRAL	NA	322	Too-Many
TCGA.CK.5914.01A	12	79679535	80328458	38	0.2408	NEUTRAL	NA	3	"PAWR,PPP1R12A,SYT1"
TCGA.AA.3842	12	79775247	133777644	17548	0.0523	NEUTRAL	NA	345	Too-Many
TCGA.AG.4008	12	79913244	111819588	9687	0.0282	NEUTRAL	NA	170	Too-Many
TCGA.CK.5914.01A	12	80633070	80648814	6	-0.4601	NEUTRAL	NA	1	OTOGL
TCGA.CK.5914.01A	12	80722388	81675026	93	0.1519	NEUTRAL	NA	7	"ACSS3,LIN7A,MYF5,MYF6,OTOGL,PPFIA2,PTPRQ"
TCGA.AG.3906.01A	12	80726714	100717261	724	-0.0524	NEUTRAL	NA	73	"ACSS3,ACTR6,ALX1,AMDHD1,ANKS1B,APAF1,ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC38,CCDC59,CCER1,CDK17,CEP290,CEP83,CFAP54,CLLU1,CLLU1OS,CRADD,DCN,DEPDC4,DUSP6,EEA1,ELK3,EPYC,FAM71C,FGD6,GALNT4,HAL,IKBIP,KERA,KITLG,LIN7A,LRRIQ1,LTA4H,LUM,METAP2,METTL25,MGAT4C,MRPL42,MYF5,MYF6,NDUFA12,NEDD1,NR2C1,NTN4,NTS,NUDT4,OTOGL,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PTPRQ,RASSF9,SCYL2,SLC25A3,SLC6A15,SNRPF,SOCS2,TMCC3,TMPO,TMTC2,TMTC3,TSPAN19,UBE2N,UHRF1BP1L,USP44,VEZT"
TCGA.AA.A010.01A	12	80730235	100660679	771	0.1184	NEUTRAL	NA	72	"ACSS3,ACTR6,ALX1,AMDHD1,ANKS1B,APAF1,ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC38,CCDC59,CCER1,CDK17,CEP290,CEP83,CFAP54,CLLU1,CLLU1OS,CRADD,DCN,DEPDC4,DUSP6,EEA1,ELK3,EPYC,FAM71C,FGD6,GALNT4,HAL,IKBIP,KERA,KITLG,LIN7A,LRRIQ1,LTA4H,LUM,METAP2,METTL25,MGAT4C,MRPL42,MYF5,MYF6,NDUFA12,NEDD1,NR2C1,NTN4,NTS,NUDT4,OTOGL,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PTPRQ,RASSF9,SLC25A3,SLC6A15,SNRPF,SOCS2,TMCC3,TMPO,TMTC2,TMTC3,TSPAN19,UBE2N,UHRF1BP1L,USP44,VEZT"
TCGA.AG.A008.01A	12	80770846	81110896	6	-0.4134	NEUTRAL	NA	4	"MYF5,MYF6,OTOGL,PTPRQ"
TCGA.AA.3968	12	80829549	108014345	8562	-0.4191	NEUTRAL	NA	120	Too-Many
TCGA.DY.A1DC	12	80849579	80880677	12	0.0976	NEUTRAL	NA	1	PTPRQ
TCGA.DY.A1DC	12	80902637	83447666	709	0.0068	NEUTRAL	NA	9	"ACSS3,CCDC59,LIN7A,METTL25,MYF5,MYF6,PPFIA2,PTPRQ,TMTC2"
TCGA.AG.A008.01A	12	81112077	133778682	3545	0.1341	NEUTRAL	NA	339	Too-Many
TCGA.CK.5914.01A	12	81833711	82751970	9	-0.1895	NEUTRAL	NA	2	"CCDC59,PPFIA2"
TCGA.AA.3844	12	82458324	83845663	368	0.1473	NEUTRAL	NA	3	"CCDC59,METTL25,TMTC2"
TCGA.AG.A00H.01A	12	82780541	96411250	451	0.1175	NEUTRAL	NA	51	"ALX1,AMDHD1,ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC38,CCER1,CEP290,CEP83,CLLU1,CLLU1OS,CRADD,DCN,DUSP6,EEA1,EPYC,FGD6,GALNT4,HAL,KERA,KITLG,LRRIQ1,LTA4H,LUM,METAP2,METTL25,MGAT4C,MRPL42,NDUFA12,NR2C1,NTN4,NTS,NUDT4,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,RASSF9,SLC6A15,SNRPF,SOCS2,TMCC3,TMTC2,TMTC3,TSPAN19,UBE2N,USP44,VEZT"
TCGA.CK.5914.01A	12	82870384	88496607	121	0.0851	NEUTRAL	NA	12	"ALX1,C12orf29,C12orf50,CEP290,LRRIQ1,METTL25,MGAT4C,NTS,RASSF9,SLC6A15,TMTC2,TSPAN19"
TCGA.AG.3591	12	82932019	88249512	1250	0.1775	NEUTRAL	NA	8	"ALX1,LRRIQ1,MGAT4C,NTS,RASSF9,SLC6A15,TMTC2,TSPAN19"
TCGA.AA.3860	12	83190086	133777644	16685	0.0168	NEUTRAL	NA	333	Too-Many
TCGA.A6.2677	12	83197610	133777644	15434	-0.1257	NEUTRAL	NA	333	Too-Many
TCGA.A6.2678	12	83274173	133777644	16647	-0.009	NEUTRAL	NA	333	Too-Many
TCGA.AA.3531	12	83274173	133777644	16644	-0.0136	NEUTRAL	NA	333	Too-Many
TCGA.BM.6198	12	83324455	93961109	2783	0.03895	NEUTRAL	NA	33	"ALX1,ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCER1,CEP290,CLLU1,CLLU1OS,DCN,DUSP6,EEA1,EPYC,GALNT4,KERA,KITLG,LRRIQ1,LUM,MGAT4C,MRPL42,NTS,NUDT4,PLEKHG7,POC1B,POC1B-GALNT4,RASSF9,SLC6A15,TMTC2,TMTC3,TSPAN19,UBE2N"
TCGA.DY.A1DC	12	83476424	83828875	100	-0.0127	NEUTRAL	NA	1	TMTC2
TCGA.AG.A01W.01A	12	83779525	84754035	52	0.2392	NEUTRAL	NA	0	None
TCGA.AA.3870	12	83859924	106306002	7055	-0.0137	NEUTRAL	NA	101	Too-Many
TCGA.AA.3864	12	83859924	133777644	16424	0.0454	NEUTRAL	NA	332	Too-Many
TCGA.AA.3872	12	83859924	133777644	16460	-0.0728	NEUTRAL	NA	332	Too-Many
TCGA.AA.3955	12	83859924	133777644	16463	0.0199	NEUTRAL	NA	332	Too-Many
TCGA.AA.3989	12	83859924	133777644	16464	0.039	NEUTRAL	NA	332	Too-Many
TCGA.AA.3811	12	83871769	84805715	243	-0.3427	NEUTRAL	NA	0	None
TCGA.AA.3844	12	83875439	89638451	1295	0.0109	NEUTRAL	NA	12	"ALX1,C12orf29,C12orf50,CEP290,KITLG,LRRIQ1,MGAT4C,NTS,RASSF9,SLC6A15,TMTC3,TSPAN19"
TCGA.DY.A1DC	12	83885507	85449464	417	0.0141	NEUTRAL	NA	3	"LRRIQ1,SLC6A15,TSPAN19"
TCGA.EI.6883	12	84382649	87195184	616	0.0032	NEUTRAL	NA	7	"ALX1,LRRIQ1,MGAT4C,NTS,RASSF9,SLC6A15,TSPAN19"
TCGA.AG.A01W.01A	12	84897178	93067272	213	0.1984	NEUTRAL	NA	26	"ALX1,ATP2B1,BTG1,C12orf29,C12orf50,C12orf79,CCER1,CEP290,CLLU1,CLLU1OS,DCN,DUSP6,EPYC,GALNT4,KERA,KITLG,LRRIQ1,LUM,MGAT4C,NTS,POC1B,POC1B-GALNT4,RASSF9,SLC6A15,TMTC3,TSPAN19"
TCGA.DY.A1DC	12	85471015	85734516	39	0.1576	NEUTRAL	NA	2	"ALX1,LRRIQ1"
TCGA.CM.6677	12	85693036	89995465	944	-0.0358	NEUTRAL	NA	14	"ALX1,ATP2B1,C12orf29,C12orf50,CEP290,DUSP6,GALNT4,KITLG,MGAT4C,NTS,POC1B,POC1B-GALNT4,RASSF9,TMTC3"
TCGA.AA.3941	12	85754639	86024736	57	-0.5065	NEUTRAL	NA	0	None
TCGA.DY.A1DC	12	85754639	87195184	275	0.0178	NEUTRAL	NA	3	"MGAT4C,NTS,RASSF9"
TCGA.AA.A03F	12	85756684	133777644	15984	0.0328	NEUTRAL	NA	328	Too-Many
TCGA.CA.6715	12	85818782	93812200	2068	0.0253	NEUTRAL	NA	27	"ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCER1,CEP290,CLLU1,CLLU1OS,DCN,DUSP6,EEA1,EPYC,GALNT4,KERA,KITLG,LUM,MGAT4C,NTS,NUDT4,PLEKHG7,POC1B,POC1B-GALNT4,RASSF9,TMTC3,UBE2N"
TCGA.AA.3811	12	86010754	92857559	1752	-0.3114	NEUTRAL	NA	22	"ATP2B1,BTG1,C12orf29,C12orf50,C12orf79,CCER1,CEP290,CLLU1,CLLU1OS,DCN,DUSP6,EPYC,GALNT4,KERA,KITLG,LUM,MGAT4C,NTS,POC1B,POC1B-GALNT4,RASSF9,TMTC3"
TCGA.AA.3941	12	86046653	86359979	100	0.1688	NEUTRAL	NA	2	"NTS,RASSF9"
TCGA.AG.A036.01A	12	87026928	88442992	56	-0.2014	NEUTRAL	NA	4	"C12orf29,C12orf50,CEP290,MGAT4C"
TCGA.AA.3660	12	87046311	91107612	954	0.3469	NEUTRAL	NA	11	"ATP2B1,C12orf29,C12orf50,CEP290,DUSP6,GALNT4,KITLG,MGAT4C,POC1B,POC1B-GALNT4,TMTC3"
TCGA.DY.A1DC	12	87242637	87376536	25	0.0752	NEUTRAL	NA	0	None
TCGA.DY.A1DC	12	87451658	91068208	873	0.0428	NEUTRAL	NA	10	"ATP2B1,C12orf29,C12orf50,CEP290,DUSP6,GALNT4,KITLG,POC1B,POC1B-GALNT4,TMTC3"
TCGA.AA.3941	12	87491052	87999390	104	-0.4677	NEUTRAL	NA	0	None
TCGA.EI.7004	12	87673591	133777644	15590	0.1762	NEUTRAL	NA	325	Too-Many
TCGA.AA.3941	12	88012598	88212944	33	-0.3561	NEUTRAL	NA	0	None
TCGA.AA.3941	12	88234603	88347199	30	-0.2958	NEUTRAL	NA	0	None
TCGA.AG.3591	12	88266611	93428690	1506	-0.2164	NEUTRAL	NA	22	"ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCER1,CEP290,CLLU1,CLLU1OS,DCN,DUSP6,EEA1,EPYC,GALNT4,KERA,KITLG,LUM,PLEKHG7,POC1B,POC1B-GALNT4,TMTC3"
TCGA.AA.3941	12	88362791	91440206	786	-0.2492	NEUTRAL	NA	12	"ATP2B1,C12orf29,C12orf50,CCER1,CEP290,DUSP6,EPYC,GALNT4,KITLG,POC1B,POC1B-GALNT4,TMTC3"
TCGA.AA.3861.01A	12	88374019	112479774	1776	0.0753	NEUTRAL	NA	160	Too-Many
TCGA.AG.3909.01A	12	88420228	88447379	12	-0.3937	NEUTRAL	NA	3	"C12orf29,C12orf50,CEP290"
TCGA.AG.3909.01A	12	88448072	89885665	80	0.2205	NEUTRAL	NA	5	"CEP290,DUSP6,KITLG,POC1B,TMTC3"
TCGA.CK.5914.01A	12	88500450	88548043	23	-0.3784	NEUTRAL	NA	2	"CEP290,TMTC3"
TCGA.AG.A036.01A	12	88508846	102937458	865	0.1976	NEUTRAL	NA	72	"ACTR6,AMDHD1,ANKS1B,ANO4,APAF1,ARL1,ATP2B1,BTG1,C12orf74,C12orf79,CCDC38,CCDC53,CCER1,CDK17,CEP290,CEP83,CFAP54,CHPT1,CLLU1,CLLU1OS,CRADD,DCN,DEPDC4,DRAM1,DUSP6,EEA1,ELK3,EPYC,FAM71C,FGD6,GALNT4,GAS2L3,GNPTAB,HAL,IGF1,IKBIP,KERA,KITLG,LTA4H,LUM,METAP2,MRPL42,MYBPC1,NDUFA12,NEDD1,NR1H4,NR2C1,NTN4,NUDT4,NUP37,PARPBP,PLEKHG7,PLXNC1,PMCH,POC1B,POC1B-GALNT4,SCYL2,SLC17A8,SLC25A3,SLC5A8,SNRPF,SOCS2,SPIC,SYCP3,TMCC3,TMPO,TMTC3,UBE2N,UHRF1BP1L,USP44,UTP20,VEZT"
TCGA.CK.5914.01A	12	88553844	89865893	30	0.2353	NEUTRAL	NA	4	"DUSP6,KITLG,POC1B,TMTC3"
TCGA.DM.A1D7	12	89255079	92939696	1148	0.3202	NEUTRAL	NA	14	"ATP2B1,BTG1,C12orf79,CCER1,CLLU1,CLLU1OS,DCN,DUSP6,EPYC,GALNT4,KERA,LUM,POC1B,POC1B-GALNT4"
TCGA.AA.3844	12	89642334	89664676	13	-0.3478	NEUTRAL	NA	0	None
TCGA.AA.3844	12	89669784	90561307	211	0.3105	NEUTRAL	NA	5	"ATP2B1,DUSP6,GALNT4,POC1B,POC1B-GALNT4"
TCGA.CK.5914.01A	12	89919564	93206729	73	0.368	NEUTRAL	NA	15	"ATP2B1,BTG1,C12orf74,C12orf79,CCER1,CLLU1,CLLU1OS,DCN,EEA1,EPYC,KERA,LUM,PLEKHG7,POC1B,POC1B-GALNT4"
TCGA.AG.3909.01A	12	89984721	96292112	234	0.2081	NEUTRAL	NA	30	"ATP2B1,BTG1,C12orf74,C12orf79,CCDC38,CCER1,CEP83,CLLU1,CLLU1OS,CRADD,DCN,EEA1,EPYC,FGD6,KERA,LUM,METAP2,MRPL42,NDUFA12,NR2C1,NTN4,NUDT4,PLEKHG7,PLXNC1,SNRPF,SOCS2,TMCC3,UBE2N,USP44,VEZT"
TCGA.CM.6677	12	89995731	96255306	2112	-0.298	NEUTRAL	NA	29	"ATP2B1,BTG1,C12orf74,C12orf79,CCER1,CEP83,CLLU1,CLLU1OS,CRADD,DCN,EEA1,EPYC,FGD6,KERA,LUM,METAP2,MRPL42,NDUFA12,NR2C1,NTN4,NUDT4,PLEKHG7,PLXNC1,SNRPF,SOCS2,TMCC3,UBE2N,USP44,VEZT"
TCGA.AA.3844	12	90561449	91444891	257	0.0206	NEUTRAL	NA	3	"CCER1,EPYC,KERA"
TCGA.DY.A1DC	12	91091254	91444891	105	0.0754	NEUTRAL	NA	3	"CCER1,EPYC,KERA"
TCGA.AA.3660	12	91111928	91593036	137	-0.0162	NEUTRAL	NA	5	"CCER1,DCN,EPYC,KERA,LUM"
TCGA.AA.3844	12	91452183	91458758	8	-0.2911	NEUTRAL	NA	0	None
TCGA.AA.3941	12	91479221	91589552	21	-0.3674	NEUTRAL	NA	2	"DCN,LUM"
TCGA.AA.3844	12	91479221	91614785	30	0.0969	NEUTRAL	NA	2	"DCN,LUM"
TCGA.DY.A1DC	12	91479221	133777644	14647	-0.0299	NEUTRAL	NA	312	Too-Many
TCGA.CL.5917	12	91544965	133777644	14625	-0.0261	NEUTRAL	NA	311	Too-Many
TCGA.AA.3660	12	91596869	95694605	1489	0.3616	NEUTRAL	NA	19	"BTG1,C12orf74,C12orf79,CEP83,CLLU1,CLLU1OS,CRADD,EEA1,FGD6,MRPL42,NDUFA12,NR2C1,NUDT4,PLEKHG7,PLXNC1,SOCS2,TMCC3,UBE2N,VEZT"
TCGA.AA.3941	12	91606394	91614785	6	-0.0666	NEUTRAL	NA	0	None
TCGA.AA.3941	12	91658029	92462800	282	-0.2766	NEUTRAL	NA	1	C12orf79
TCGA.AA.3844	12	91660468	92129613	141	0.1604	NEUTRAL	NA	0	None
TCGA.CA.6716	12	91789863	93972869	710	0.0104	NEUTRAL	NA	11	"BTG1,C12orf74,C12orf79,CLLU1,CLLU1OS,EEA1,MRPL42,NUDT4,PLEKHG7,SOCS2,UBE2N"
TCGA.AA.3844	12	92160198	92339111	81	0.129	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	12	92296203	97749886	320	0.3583	NEUTRAL	NA	31	"AMDHD1,BTG1,C12orf74,C12orf79,CCDC38,CDK17,CEP83,CFAP54,CLLU1,CLLU1OS,CRADD,EEA1,ELK3,FGD6,HAL,LTA4H,METAP2,MRPL42,NDUFA12,NEDD1,NR2C1,NTN4,NUDT4,PLEKHG7,PLXNC1,SNRPF,SOCS2,TMCC3,UBE2N,USP44,VEZT"
TCGA.AA.3850	12	92404233	93189056	330	-0.15645	NEUTRAL	NA	7	"BTG1,C12orf74,C12orf79,CLLU1,CLLU1OS,EEA1,PLEKHG7"
TCGA.AA.3941	12	92464664	92689172	79	0.354	NEUTRAL	NA	2	"BTG1,C12orf79"
TCGA.AA.3982	12	92464664	114483426	7203	0.0455	NEUTRAL	NA	166	Too-Many
TCGA.AA.3941	12	92699888	92705203	6	-0.5054	NEUTRAL	NA	0	None
TCGA.AA.3941	12	92786262	92794172	10	-0.5084	NEUTRAL	NA	0	None
TCGA.AA.3941	12	92802123	92840473	29	0.2573	NEUTRAL	NA	2	"CLLU1,CLLU1OS"
TCGA.AA.A00Q.01A	12	92816277	108685587	941	0.1736	NEUTRAL	NA	92	"ACTR6,ALDH1L2,AMDHD1,ANKS1B,ANO4,APAF1,APPL2,ARL1,ASCL1,ASCL4,BTBD11,C12orf42,C12orf45,C12orf73,C12orf74,C12orf75,CCDC38,CCDC53,CDK17,CEP83,CFAP54,CHPT1,CHST11,CKAP4,CLLU1,CLLU1OS,CMKLR1,CRADD,CRY1,DEPDC4,DRAM1,EEA1,EID3,ELK3,FAM71C,FGD6,GAS2L3,GLT8D2,GNPTAB,HAL,HCFC2,HSP90B1,IGF1,IKBIP,KIAA1033,LTA4H,METAP2,MRPL42,MTERF2,MYBPC1,NDUFA12,NEDD1,NFYB,NR1H4,NR2C1,NT5DC3,NTN4,NUAK1,NUDT4,NUP37,PAH,PARPBP,PLEKHG7,PLXNC1,PMCH,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SCYL2,SLC17A8,SLC25A3,SLC41A2,SLC5A8,SNRPF,SOCS2,SPIC,STAB2,SYCP3,TCP11L2,TDG,TMCC3,TMEM263,TMPO,TXNRD1,UBE2N,UHRF1BP1L,USP44,UTP20,VEZT,WSCD2"
TCGA.AA.3941	12	92857559	93011710	89	0.2187	NEUTRAL	NA	0	None
TCGA.AA.3811	12	92858995	116162119	7941	0.0301	NEUTRAL	NA	164	Too-Many
TCGA.A6.5661	12	92885900	133777644	14145	-0.2837	NEUTRAL	NA	306	Too-Many
TCGA.DM.A1D7	12	92942033	94990087	700	0.0247	NEUTRAL	NA	11	"C12orf74,CEP83,CRADD,EEA1,MRPL42,NUDT4,PLEKHG7,PLXNC1,SOCS2,TMCC3,UBE2N"
TCGA.AG.A01W.01A	12	93087024	93253447	34	-0.2032	NEUTRAL	NA	3	"C12orf74,EEA1,PLEKHG7"
TCGA.CK.5914.01A	12	93209928	94617978	41	-0.09	NEUTRAL	NA	7	"CRADD,EEA1,MRPL42,NUDT4,PLXNC1,SOCS2,UBE2N"
TCGA.AZ.4684.01A	12	93219904	96052843	145	-0.13	NEUTRAL	NA	16	"CEP83,CRADD,EEA1,FGD6,METAP2,MRPL42,NDUFA12,NR2C1,NTN4,NUDT4,PLXNC1,SOCS2,TMCC3,UBE2N,USP44,VEZT"
TCGA.AG.A01L.01A	12	93219904	101480431	439	0.0592	NEUTRAL	NA	39	"ACTR6,AMDHD1,ANKS1B,ANO4,APAF1,CCDC38,CDK17,CEP83,CFAP54,CRADD,DEPDC4,EEA1,ELK3,FAM71C,FGD6,GAS2L3,HAL,IKBIP,LTA4H,METAP2,MRPL42,NDUFA12,NEDD1,NR1H4,NR2C1,NTN4,NUDT4,PLXNC1,SCYL2,SLC17A8,SLC25A3,SNRPF,SOCS2,TMCC3,TMPO,UBE2N,UHRF1BP1L,USP44,VEZT"
TCGA.AA.3509.01A	12	93250997	96052843	137	-0.1996	NEUTRAL	NA	16	"CEP83,CRADD,EEA1,FGD6,METAP2,MRPL42,NDUFA12,NR2C1,NTN4,NUDT4,PLXNC1,SOCS2,TMCC3,UBE2N,USP44,VEZT"
TCGA.AA.3850	12	93381267	94890010	522	0.15355	NEUTRAL	NA	7	"CEP83,CRADD,MRPL42,NUDT4,PLXNC1,SOCS2,UBE2N"
TCGA.AG.3591	12	93436118	128251785	11745	0.1078	NEUTRAL	NA	269	Too-Many
TCGA.AG.A01W.01A	12	93496261	99937893	365	0.0225	NEUTRAL	NA	29	"AMDHD1,ANKS1B,APAF1,CCDC38,CDK17,CEP83,CFAP54,CRADD,ELK3,FGD6,HAL,IKBIP,LTA4H,METAP2,MRPL42,NDUFA12,NEDD1,NR2C1,NTN4,NUDT4,PLXNC1,SLC25A3,SNRPF,SOCS2,TMCC3,TMPO,UBE2N,USP44,VEZT"
TCGA.AG.3602	12	93673390	133777644	13864	0.0194	NEUTRAL	NA	303	Too-Many
TCGA.AG.A00Y.01A	12	93789186	96260822	139	0.051	NEUTRAL	NA	16	"CEP83,CRADD,FGD6,METAP2,MRPL42,NDUFA12,NR2C1,NTN4,NUDT4,PLXNC1,SNRPF,SOCS2,TMCC3,UBE2N,USP44,VEZT"
TCGA.AA.3494	12	93958656	103358664	3217	-0.0722	NEUTRAL	NA	51	"ACTR6,AMDHD1,ANKS1B,ANO4,APAF1,ARL1,ASCL1,CCDC38,CCDC53,CDK17,CEP83,CFAP54,CHPT1,CRADD,DEPDC4,DRAM1,ELK3,FAM71C,FGD6,GAS2L3,GNPTAB,HAL,IGF1,IKBIP,LTA4H,METAP2,MYBPC1,NDUFA12,NEDD1,NR1H4,NR2C1,NTN4,NUP37,PAH,PARPBP,PLXNC1,PMCH,SCYL2,SLC17A8,SLC25A3,SLC5A8,SNRPF,SOCS2,SPIC,SYCP3,TMCC3,TMPO,UHRF1BP1L,USP44,UTP20,VEZT"
TCGA.BM.6198	12	93972869	133777644	13863	-0.47245	NEUTRAL	NA	299	Too-Many
TCGA.CA.6716	12	93975847	101045000	2436	-0.2962	NEUTRAL	NA	33	"ACTR6,AMDHD1,ANKS1B,APAF1,CCDC38,CDK17,CEP83,CFAP54,CRADD,DEPDC4,ELK3,FAM71C,FGD6,GAS2L3,HAL,IKBIP,LTA4H,METAP2,NDUFA12,NEDD1,NR1H4,NR2C1,NTN4,PLXNC1,SCYL2,SLC17A8,SLC25A3,SNRPF,TMCC3,TMPO,UHRF1BP1L,USP44,VEZT"
TCGA.AY.5543	12	94273961	133777644	13646	-0.0183	NEUTRAL	NA	298	Too-Many
TCGA.AA.3941	12	94409531	94885548	191	0.32	NEUTRAL	NA	2	"CEP83,PLXNC1"
TCGA.CK.5914.01A	12	94620329	94688190	16	0.319	NEUTRAL	NA	1	PLXNC1
TCGA.DC.6155	12	94698879	130486602	12460	-0.4294	NEUTRAL	NA	268	Too-Many
TCGA.CK.5914.01A	12	94725462	95434202	25	0.1982	NEUTRAL	NA	4	"CEP83,NDUFA12,NR2C1,TMCC3"
TCGA.DM.A1D7	12	94992457	102994982	2643	0.2936	NEUTRAL	NA	45	"ACTR6,AMDHD1,ANKS1B,ANO4,APAF1,ARL1,CCDC38,CCDC53,CDK17,CFAP54,CHPT1,DEPDC4,DRAM1,ELK3,FAM71C,FGD6,GAS2L3,GNPTAB,HAL,IGF1,IKBIP,LTA4H,METAP2,MYBPC1,NDUFA12,NEDD1,NR1H4,NR2C1,NTN4,NUP37,PARPBP,PMCH,SCYL2,SLC17A8,SLC25A3,SLC5A8,SNRPF,SPIC,SYCP3,TMCC3,TMPO,UHRF1BP1L,USP44,UTP20,VEZT"
TCGA.AA.3850	12	95104523	96255703	438	0.36735	NEUTRAL	NA	8	"FGD6,METAP2,NDUFA12,NR2C1,NTN4,SNRPF,USP44,VEZT"
TCGA.AA.3544	12	95117607	124339406	9403	0.0215	NEUTRAL	NA	250	Too-Many
TCGA.AG.A014.01A	12	95422126	133778682	3070	-0.4004	NEUTRAL	NA	294	Too-Many
TCGA.AA.A00N.01A	12	95442797	95451278	3	-0.1867	NEUTRAL	NA	1	NR2C1
TCGA.CK.5914.01A	12	95442797	96282174	76	-0.2218	NEUTRAL	NA	8	"CCDC38,FGD6,METAP2,NR2C1,NTN4,SNRPF,USP44,VEZT"
TCGA.AA.A00N.01A	12	95483305	96284558	67	0.0491	NEUTRAL	NA	7	"CCDC38,FGD6,METAP2,NTN4,SNRPF,USP44,VEZT"
TCGA.AA.3660	12	95699928	95863504	73	-0.0934	NEUTRAL	NA	0	None
TCGA.AA.3660	12	95864164	97024188	414	0.3359	NEUTRAL	NA	11	"AMDHD1,CCDC38,CDK17,CFAP54,ELK3,HAL,LTA4H,METAP2,NTN4,SNRPF,USP44"
TCGA.AG.3611.01A	12	95906540	96660813	79	0.3547	NEUTRAL	NA	9	"AMDHD1,CCDC38,ELK3,HAL,LTA4H,METAP2,NTN4,SNRPF,USP44"
TCGA.AA.A00L.01A	12	95907411	96076431	10	0.0892	NEUTRAL	NA	3	"METAP2,NTN4,USP44"
TCGA.AA.3509.01A	12	96059549	100453581	213	0.1323	NEUTRAL	NA	17	"AMDHD1,ANKS1B,APAF1,CCDC38,CDK17,CFAP54,ELK3,FAM71C,HAL,IKBIP,LTA4H,NEDD1,NTN4,SLC25A3,SNRPF,TMPO,UHRF1BP1L"
TCGA.AZ.4684.01A	12	96059549	100478245	217	0.1607	NEUTRAL	NA	17	"AMDHD1,ANKS1B,APAF1,CCDC38,CDK17,CFAP54,ELK3,FAM71C,HAL,IKBIP,LTA4H,NEDD1,NTN4,SLC25A3,SNRPF,TMPO,UHRF1BP1L"
TCGA.AA.A00L.01A	12	96077267	96350435	27	-0.1835	NEUTRAL	NA	4	"AMDHD1,CCDC38,NTN4,SNRPF"
TCGA.CM.6677	12	96255703	99443256	1142	0.0203	NEUTRAL	NA	14	"AMDHD1,ANKS1B,APAF1,CCDC38,CDK17,CFAP54,ELK3,HAL,IKBIP,LTA4H,NEDD1,SLC25A3,SNRPF,TMPO"
TCGA.AA.3850	12	96264534	96832935	203	0.26715	NEUTRAL	NA	6	"AMDHD1,CCDC38,CDK17,ELK3,HAL,LTA4H"
TCGA.AG.A00Y.01A	12	96271957	104033853	516	-0.0415	NEUTRAL	NA	40	"ACTR6,AMDHD1,ANKS1B,ANO4,APAF1,ARL1,ASCL1,C12orf42,CCDC38,CCDC53,CDK17,CFAP54,CHPT1,DEPDC4,DRAM1,ELK3,FAM71C,GAS2L3,GNPTAB,HAL,IGF1,IKBIP,LTA4H,MYBPC1,NEDD1,NR1H4,NUP37,PAH,PARPBP,PMCH,SCYL2,SLC17A8,SLC25A3,SLC5A8,SPIC,STAB2,SYCP3,TMPO,UHRF1BP1L,UTP20"
TCGA.AA.A00F.01A	12	96282174	96367959	17	0.341	NEUTRAL	NA	3	"AMDHD1,CCDC38,HAL"
TCGA.AA.A00L.01A	12	96354129	98909619	99	0.0585	NEUTRAL	NA	8	"AMDHD1,CDK17,CFAP54,ELK3,HAL,LTA4H,NEDD1,TMPO"
TCGA.AA.A02K.01A	12	96370146	115120638	1787	0.1164	NEUTRAL	NA	143	Too-Many
TCGA.AA.A00F.01A	12	96370151	99548029	139	-0.0156	NEUTRAL	NA	11	"ANKS1B,APAF1,CDK17,CFAP54,ELK3,HAL,IKBIP,LTA4H,NEDD1,SLC25A3,TMPO"
TCGA.AA.A00N.01A	12	96371680	96422796	30	-0.1689	NEUTRAL	NA	2	"HAL,LTA4H"
TCGA.AG.3909.01A	12	96371680	96429092	31	-0.0414	NEUTRAL	NA	2	"HAL,LTA4H"
TCGA.AG.A00C.01A	12	96371680	98989495	102	-0.1178	NEUTRAL	NA	8	"CDK17,CFAP54,ELK3,HAL,LTA4H,NEDD1,SLC25A3,TMPO"
TCGA.CK.5914.01A	12	96389413	96640701	22	-0.1033	NEUTRAL	NA	3	"ELK3,HAL,LTA4H"
TCGA.AG.A00H.01A	12	96414792	122284717	2137	-0.0837	NEUTRAL	NA	200	Too-Many
TCGA.AA.A01I.01A	12	96414792	124144364	2469	-0.0052	NEUTRAL	NA	236	Too-Many
TCGA.CK.5914.01A	12	96676235	97158806	39	-0.0244	NEUTRAL	NA	2	"CDK17,CFAP54"
TCGA.AG.3611.01A	12	96704783	99097101	81	0.2378	NEUTRAL	NA	7	"APAF1,CDK17,CFAP54,IKBIP,NEDD1,SLC25A3,TMPO"
TCGA.AA.3844	12	96948162	98772974	710	0.1314	NEUTRAL	NA	2	"CFAP54,NEDD1"
TCGA.AA.3850	12	96948162	104008917	2250	-0.23175	NEUTRAL	NA	34	"ACTR6,ANKS1B,ANO4,APAF1,ARL1,ASCL1,C12orf42,CCDC53,CFAP54,CHPT1,DEPDC4,DRAM1,FAM71C,GAS2L3,GNPTAB,IGF1,IKBIP,MYBPC1,NEDD1,NR1H4,NUP37,PAH,PARPBP,PMCH,SCYL2,SLC17A8,SLC25A3,SLC5A8,SPIC,STAB2,SYCP3,TMPO,UHRF1BP1L,UTP20"
TCGA.AA.3941	12	96948162	104008917	2245	0.0011	NEUTRAL	NA	34	"ACTR6,ANKS1B,ANO4,APAF1,ARL1,ASCL1,C12orf42,CCDC53,CFAP54,CHPT1,DEPDC4,DRAM1,FAM71C,GAS2L3,GNPTAB,IGF1,IKBIP,MYBPC1,NEDD1,NR1H4,NUP37,PAH,PARPBP,PMCH,SCYL2,SLC17A8,SLC25A3,SLC5A8,SPIC,STAB2,SYCP3,TMPO,UHRF1BP1L,UTP20"
TCGA.D5.6926	12	96962428	99532474	917	0.1313	NEUTRAL	NA	7	"ANKS1B,APAF1,CFAP54,IKBIP,NEDD1,SLC25A3,TMPO"
TCGA.AA.3660	12	97031856	98593723	640	-0.0462	NEUTRAL	NA	2	"CFAP54,NEDD1"
TCGA.AG.3909.01A	12	97303482	98987720	26	-0.105	NEUTRAL	NA	3	"NEDD1,SLC25A3,TMPO"
TCGA.CK.4952.01A	12	97971018	99244494	72	-0.0314	NEUTRAL	NA	5	"ANKS1B,APAF1,IKBIP,SLC25A3,TMPO"
TCGA.AA.3867	12	98082218	133777644	12188	-0.0654	NEUTRAL	NA	279	Too-Many
TCGA.EI.6883	12	98772974	104591931	1805	0.0076	NEUTRAL	NA	39	"ACTR6,ANKS1B,ANO4,APAF1,ARL1,ASCL1,C12orf42,C12orf73,CCDC53,CHPT1,DEPDC4,DRAM1,FAM71C,GAS2L3,GLT8D2,GNPTAB,HCFC2,HSP90B1,IGF1,IKBIP,MYBPC1,NFYB,NR1H4,NT5DC3,NUP37,PAH,PARPBP,PMCH,SCYL2,SLC17A8,SLC25A3,SLC5A8,SPIC,STAB2,SYCP3,TDG,TMPO,UHRF1BP1L,UTP20"
TCGA.AA.3660	12	98785168	101566835	763	0.0304	NEUTRAL	NA	15	"ACTR6,ANKS1B,ANO4,APAF1,DEPDC4,FAM71C,GAS2L3,IKBIP,NR1H4,SCYL2,SLC17A8,SLC25A3,SLC5A8,TMPO,UHRF1BP1L"
TCGA.CK.5914.01A	12	98909619	98987720	10	-0.257	NEUTRAL	NA	2	"SLC25A3,TMPO"
TCGA.AA.A00D.01A	12	98909619	99074033	32	0.3542	NEUTRAL	NA	4	"APAF1,IKBIP,SLC25A3,TMPO"
TCGA.AA.A00N.01A	12	98921612	98987720	9	-0.3741	NEUTRAL	NA	2	"SLC25A3,TMPO"
TCGA.AA.A00L.01A	12	98987720	100904534	115	0.045	NEUTRAL	NA	11	"ACTR6,ANKS1B,APAF1,DEPDC4,FAM71C,IKBIP,NR1H4,SCYL2,SLC17A8,SLC25A3,UHRF1BP1L"
TCGA.AA.A00N.01A	12	99071166	99120941	14	0.009	NEUTRAL	NA	1	APAF1
TCGA.AG.A00C.01A	12	99074033	100583594	71	-0.165	NEUTRAL	NA	4	"ANKS1B,APAF1,FAM71C,UHRF1BP1L"
TCGA.AG.3909.01A	12	99076904	99120941	12	0.0414	NEUTRAL	NA	1	APAF1
TCGA.AA.A00D.01A	12	99076904	100551717	44	-0.1054	NEUTRAL	NA	4	"ANKS1B,APAF1,FAM71C,UHRF1BP1L"
TCGA.CK.5914.01A	12	99093171	100583594	68	0.178	NEUTRAL	NA	4	"ANKS1B,APAF1,FAM71C,UHRF1BP1L"
TCGA.AG.3611.01A	12	99100216	100200162	14	-0.0967	NEUTRAL	NA	3	"ANKS1B,APAF1,FAM71C"
TCGA.AA.3967.01A	12	99192651	100377832	24	-0.4157	NEUTRAL	NA	2	"ANKS1B,FAM71C"
TCGA.AA.3844	12	99401273	100286391	248	0.0923	NEUTRAL	NA	2	"ANKS1B,FAM71C"
TCGA.CM.6677	12	99444431	102923512	964	-0.285	NEUTRAL	NA	24	"ACTR6,ANKS1B,ANO4,ARL1,CCDC53,CHPT1,DEPDC4,DRAM1,FAM71C,GAS2L3,GNPTAB,IGF1,MYBPC1,NR1H4,NUP37,PARPBP,PMCH,SCYL2,SLC17A8,SLC5A8,SPIC,SYCP3,UHRF1BP1L,UTP20"
TCGA.D5.6926	12	99537212	100157864	166	-0.2448	NEUTRAL	NA	2	"ANKS1B,FAM71C"
TCGA.CA.6715	12	99676629	133777644	11687	-0.0069	NEUTRAL	NA	275	Too-Many
TCGA.AA.A00F.01A	12	100041906	100431372	4	-0.4617	NEUTRAL	NA	3	"ANKS1B,FAM71C,UHRF1BP1L"
TCGA.G4.6322	12	100140622	133777644	11600	-0.0211	NEUTRAL	NA	274	Too-Many
TCGA.D5.6926	12	100166934	133777644	11569	0.1043	NEUTRAL	NA	274	Too-Many
TCGA.AG.A01W.01A	12	100198115	100229929	18	-0.3796	NEUTRAL	NA	1	ANKS1B
TCGA.AG.A01W.01A	12	100235371	100260319	12	0.3246	NEUTRAL	NA	1	ANKS1B
TCGA.AG.A01W.01A	12	100260622	100547307	44	-0.0785	NEUTRAL	NA	2	"ANKS1B,UHRF1BP1L"
TCGA.AA.3844	12	100286817	101354492	274	0.3678	NEUTRAL	NA	9	"ACTR6,ANKS1B,ANO4,DEPDC4,GAS2L3,NR1H4,SCYL2,SLC17A8,UHRF1BP1L"
TCGA.AA.3967.01A	12	100431372	131487683	2736	0.1438	NEUTRAL	NA	249	Too-Many
TCGA.AA.A00F.01A	12	100433337	100551274	24	-0.1276	NEUTRAL	NA	1	UHRF1BP1L
TCGA.AG.3611.01A	12	100497631	101720812	129	0.2599	NEUTRAL	NA	10	"ACTR6,ANO4,DEPDC4,GAS2L3,NR1H4,SCYL2,SLC17A8,SLC5A8,UHRF1BP1L,UTP20"
TCGA.AG.A01W.01A	12	100549431	100585610	18	0.3051	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	12	100551717	100583594	2	-9.00E-04	NEUTRAL	NA	0	None
TCGA.AA.A00F.01A	12	100551717	100717261	26	0.2767	NEUTRAL	NA	3	"ACTR6,DEPDC4,SCYL2"
TCGA.AG.A01W.01A	12	100588185	100634580	12	-0.0115	NEUTRAL	NA	1	ACTR6
TCGA.AG.A00C.01A	12	100594597	100709309	23	0.3579	NEUTRAL	NA	3	"ACTR6,DEPDC4,SCYL2"
TCGA.AA.A00D.01A	12	100594597	100751128	32	0.3248	NEUTRAL	NA	4	"ACTR6,DEPDC4,SCYL2,SLC17A8"
TCGA.AA.3509.01A	12	100657588	102576310	250	0.0537	NEUTRAL	NA	18	"ANO4,ARL1,CCDC53,CHPT1,DEPDC4,DRAM1,GAS2L3,GNPTAB,MYBPC1,NR1H4,NUP37,PARPBP,SCYL2,SLC17A8,SLC5A8,SPIC,SYCP3,UTP20"
TCGA.AZ.4684.01A	12	100657588	102576310	250	0.0981	NEUTRAL	NA	18	"ANO4,ARL1,CCDC53,CHPT1,DEPDC4,DRAM1,GAS2L3,GNPTAB,MYBPC1,NR1H4,NUP37,PARPBP,SCYL2,SLC17A8,SLC5A8,SPIC,SYCP3,UTP20"
TCGA.AG.A01W.01A	12	100665015	101100441	51	-0.0242	NEUTRAL	NA	4	"GAS2L3,NR1H4,SCYL2,SLC17A8"
TCGA.AG.3909.01A	12	100708238	102091593	179	0.1773	NEUTRAL	NA	11	"ANO4,ARL1,CHPT1,GAS2L3,MYBPC1,NR1H4,SCYL2,SLC17A8,SLC5A8,SPIC,UTP20"
TCGA.AA.A00N.01A	12	100709309	100934440	28	-0.0329	NEUTRAL	NA	3	"NR1H4,SCYL2,SLC17A8"
TCGA.AG.A00C.01A	12	100711531	100930239	25	-0.0622	NEUTRAL	NA	3	"NR1H4,SCYL2,SLC17A8"
TCGA.AA.A010.01A	12	100717261	101595890	74	0.0239	NEUTRAL	NA	6	"ANO4,GAS2L3,NR1H4,SCYL2,SLC17A8,SLC5A8"
TCGA.AA.A00F.01A	12	100720363	102091593	169	-0.0842	NEUTRAL	NA	11	"ANO4,ARL1,CHPT1,GAS2L3,MYBPC1,NR1H4,SCYL2,SLC17A8,SLC5A8,SPIC,UTP20"
TCGA.CK.5914.01A	12	100774431	100904534	13	0.1534	NEUTRAL	NA	2	"NR1H4,SLC17A8"
TCGA.AA.A00D.01A	12	100774431	104125284	288	-0.0139	NEUTRAL	NA	22	"ANO4,ARL1,ASCL1,C12orf42,CCDC53,CHPT1,DRAM1,GAS2L3,GNPTAB,IGF1,MYBPC1,NR1H4,NUP37,PAH,PARPBP,PMCH,SLC17A8,SLC5A8,SPIC,STAB2,SYCP3,UTP20"
TCGA.AA.A00L.01A	12	100956992	102076321	142	0.1216	NEUTRAL	NA	8	"ANO4,ARL1,GAS2L3,MYBPC1,NR1H4,SLC5A8,SPIC,UTP20"
TCGA.CK.5914.01A	12	100988595	101514251	32	0.3747	NEUTRAL	NA	2	"ANO4,GAS2L3"
TCGA.AG.A00C.01A	12	100994143	102078135	146	-0.232	NEUTRAL	NA	7	"ANO4,ARL1,GAS2L3,MYBPC1,SLC5A8,SPIC,UTP20"
TCGA.CA.6716	12	101045577	104963912	1407	0.0416	NEUTRAL	NA	29	"ANO4,ARL1,ASCL1,C12orf42,C12orf73,CCDC53,CHPT1,CHST11,DRAM1,EID3,GLT8D2,GNPTAB,HCFC2,HSP90B1,IGF1,MYBPC1,NFYB,NT5DC3,NUP37,PAH,PARPBP,PMCH,SLC5A8,SPIC,STAB2,SYCP3,TDG,TXNRD1,UTP20"
TCGA.AG.A01W.01A	12	101235183	102558005	40	0.1633	NEUTRAL	NA	13	"ANO4,ARL1,CCDC53,CHPT1,DRAM1,GNPTAB,MYBPC1,NUP37,PARPBP,SLC5A8,SPIC,SYCP3,UTP20"
TCGA.AA.3844	12	101368023	101525163	53	0.3631	NEUTRAL	NA	1	ANO4
TCGA.AG.3906.01A	12	101433681	102064042	123	-0.0589	NEUTRAL	NA	6	"ANO4,ARL1,MYBPC1,SLC5A8,SPIC,UTP20"
TCGA.CK.5914.01A	12	101520615	102023175	90	-0.1392	NEUTRAL	NA	6	"ANO4,ARL1,MYBPC1,SLC5A8,SPIC,UTP20"
TCGA.AA.3844	12	101533065	101621876	34	0.2174	NEUTRAL	NA	1	SLC5A8
TCGA.AA.A00N.01A	12	101551010	101584196	10	0.1077	NEUTRAL	NA	1	SLC5A8
TCGA.AG.A01L.01A	12	101584196	110815200	881	0.0733	NEUTRAL	NA	78	"ACACB,ALDH1L2,ALKBH2,ANAPC7,ANKRD13A,APPL2,ARL1,ASCL1,ASCL4,ATP2A2,BTBD11,C12orf42,C12orf45,C12orf73,C12orf75,C12orf76,CCDC53,CHPT1,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,DAO,DRAM1,EID3,FAM222A,FICD,FOXN4,GIT2,GLT8D2,GLTP,GNPTAB,HCFC2,HSP90B1,IFT81,IGF1,ISCU,KCTD10,KIAA1033,MMAB,MTERF2,MVK,MYBPC1,MYO1H,NFYB,NT5DC3,NUAK1,NUP37,PAH,PARPBP,PMCH,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,SELPLG,SLC41A2,SLC5A8,SPIC,SSH1,STAB2,SVOP,SYCP3,TCHP,TCP11L2,TDG,TMEM119,TMEM263,TRPV4,TXNRD1,UBE3B,UNG,USP30,UTP20,WSCD2"
TCGA.AA.3660	12	101646795	102827440	325	0.0445	NEUTRAL	NA	13	"ARL1,CCDC53,CHPT1,DRAM1,GNPTAB,IGF1,MYBPC1,NUP37,PARPBP,PMCH,SPIC,SYCP3,UTP20"
TCGA.AA.3492	12	101787607	133777644	11140	0.0039	NEUTRAL	NA	263	Too-Many
TCGA.AG.3611.01A	12	102008220	110009418	598	0.257	NEUTRAL	NA	63	"ACACB,ALDH1L2,ALKBH2,APPL2,ASCL1,ASCL4,BTBD11,C12orf42,C12orf45,C12orf73,C12orf75,CCDC53,CHPT1,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,DAO,DRAM1,EID3,FICD,FOXN4,GLT8D2,GNPTAB,HCFC2,HSP90B1,IGF1,ISCU,KCTD10,KIAA1033,MMAB,MTERF2,MYBPC1,MYO1H,NFYB,NT5DC3,NUAK1,NUP37,PAH,PARPBP,PMCH,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,SELPLG,SLC41A2,SSH1,STAB2,SVOP,SYCP3,TCP11L2,TDG,TMEM119,TMEM263,TXNRD1,UBE3B,UNG,USP30,WSCD2"
TCGA.CK.5914.01A	12	102046872	102056119	4	-0.2886	NEUTRAL	NA	1	MYBPC1
TCGA.CK.5914.01A	12	102057167	102069023	6	0.157	NEUTRAL	NA	1	MYBPC1
TCGA.AG.3906.01A	12	102067154	102110448	10	0.3697	NEUTRAL	NA	2	"CHPT1,MYBPC1"
TCGA.CK.5914.01A	12	102071011	102125304	15	-0.1974	NEUTRAL	NA	3	"CHPT1,MYBPC1,SYCP3"
TCGA.AA.A00L.01A	12	102078135	102140883	17	-0.3453	NEUTRAL	NA	4	"CHPT1,GNPTAB,MYBPC1,SYCP3"
TCGA.AA.A00F.01A	12	102107830	102147098	16	0.3082	NEUTRAL	NA	3	"CHPT1,GNPTAB,SYCP3"
TCGA.AG.A00C.01A	12	102107830	102150973	17	0.3147	NEUTRAL	NA	3	"CHPT1,GNPTAB,SYCP3"
TCGA.AG.3906.01A	12	102113853	104514958	216	-0.0192	NEUTRAL	NA	20	"ASCL1,C12orf42,C12orf73,CCDC53,CHPT1,DRAM1,GLT8D2,GNPTAB,HCFC2,HSP90B1,IGF1,NFYB,NT5DC3,NUP37,PAH,PARPBP,PMCH,STAB2,SYCP3,TDG"
TCGA.AA.A010.01A	12	102125304	104383135	194	0.3606	NEUTRAL	NA	17	"ASCL1,C12orf42,C12orf73,CCDC53,DRAM1,GLT8D2,GNPTAB,HSP90B1,IGF1,NT5DC3,NUP37,PAH,PARPBP,PMCH,STAB2,SYCP3,TDG"
TCGA.CK.5914.01A	12	102133082	102158273	11	-0.272	NEUTRAL	NA	2	"GNPTAB,SYCP3"
TCGA.AG.3909.01A	12	102142823	102155305	7	-0.0437	NEUTRAL	NA	1	GNPTAB
TCGA.AA.A00L.01A	12	102142823	104179076	133	0.0378	NEUTRAL	NA	12	"ASCL1,C12orf42,CCDC53,DRAM1,GNPTAB,IGF1,NT5DC3,NUP37,PAH,PARPBP,PMCH,STAB2"
TCGA.AA.A00F.01A	12	102150973	108954569	395	-0.041	NEUTRAL	NA	44	"ALDH1L2,APPL2,ASCL1,ASCL4,BTBD11,C12orf42,C12orf45,C12orf73,C12orf75,CCDC53,CHST11,CKAP4,CMKLR1,CRY1,DRAM1,EID3,FICD,GLT8D2,GNPTAB,HCFC2,HSP90B1,IGF1,KIAA1033,MTERF2,NFYB,NT5DC3,NUAK1,NUP37,PAH,PARPBP,PMCH,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,SLC41A2,STAB2,TCP11L2,TDG,TMEM263,TXNRD1,WSCD2"
TCGA.AG.A00C.01A	12	102151291	103988133	80	-0.2058	NEUTRAL	NA	11	"ASCL1,C12orf42,CCDC53,DRAM1,GNPTAB,IGF1,NUP37,PAH,PARPBP,PMCH,STAB2"
TCGA.CK.5914.01A	12	102159848	102455639	26	0.3522	NEUTRAL	NA	3	"CCDC53,DRAM1,GNPTAB"
TCGA.AA.3844	12	102416947	104008917	484	0.204	NEUTRAL	NA	9	"ASCL1,C12orf42,CCDC53,IGF1,NUP37,PAH,PARPBP,PMCH,STAB2"
TCGA.AG.3891.01A	12	102468110	104697664	181	-0.0228	NEUTRAL	NA	17	"ASCL1,C12orf42,C12orf73,EID3,GLT8D2,HCFC2,HSP90B1,IGF1,NFYB,NT5DC3,NUP37,PAH,PARPBP,PMCH,STAB2,TDG,TXNRD1"
TCGA.AG.3909.01A	12	102542066	104015755	42	0.3664	NEUTRAL	NA	7	"ASCL1,C12orf42,IGF1,PAH,PARPBP,PMCH,STAB2"
TCGA.CK.5914.01A	12	102547600	102576310	6	-0.0387	NEUTRAL	NA	1	PARPBP
TCGA.AG.A01W.01A	12	102578180	102608302	15	-0.0558	NEUTRAL	NA	2	"PARPBP,PMCH"
TCGA.AG.A01W.01A	12	102610661	102643951	15	-0.4085	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	102655546	102898736	50	-0.1651	NEUTRAL	NA	1	IGF1
TCGA.DM.A28M.01A	12	102796213	105255012	187	0.2049	NEUTRAL	NA	16	"ASCL1,C12orf42,C12orf73,CHST11,EID3,GLT8D2,HCFC2,HSP90B1,IGF1,NFYB,NT5DC3,PAH,SLC41A2,STAB2,TDG,TXNRD1"
TCGA.AZ.4684.01A	12	102796213	105501508	218	0.0965	NEUTRAL	NA	19	"ALDH1L2,ASCL1,C12orf42,C12orf45,C12orf73,CHST11,EID3,GLT8D2,HCFC2,HSP90B1,IGF1,KIAA1033,NFYB,NT5DC3,PAH,SLC41A2,STAB2,TDG,TXNRD1"
TCGA.AA.3509.01A	12	102796213	109727904	553	-0.0058	NEUTRAL	NA	50	"ACACB,ALDH1L2,ALKBH2,APPL2,ASCL1,ASCL4,BTBD11,C12orf42,C12orf45,C12orf73,C12orf75,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,DAO,EID3,FICD,FOXN4,GLT8D2,HCFC2,HSP90B1,IGF1,ISCU,KIAA1033,MTERF2,NFYB,NT5DC3,NUAK1,PAH,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,SELPLG,SLC41A2,SSH1,STAB2,SVOP,TCP11L2,TDG,TMEM119,TMEM263,TXNRD1,UNG,USP30,WSCD2"
TCGA.CK.4948.01B	12	102869370	133778682	2848	0.1134	NEUTRAL	NA	252	Too-Many
TCGA.AG.A01W.01A	12	102900676	104075086	116	0.1253	NEUTRAL	NA	4	"ASCL1,C12orf42,PAH,STAB2"
TCGA.CM.6677	12	102928703	103800958	317	0.0834	NEUTRAL	NA	3	"ASCL1,C12orf42,PAH"
TCGA.AG.A036.01A	12	102982448	132288804	2736	-0.1698	NEUTRAL	NA	228	Too-Many
TCGA.DM.A1D7	12	102995191	113936371	3401	0.0115	NEUTRAL	NA	106	Too-Many
TCGA.CK.5914.01A	12	103288476	104025334	15	0.0497	NEUTRAL	NA	4	"ASCL1,C12orf42,PAH,STAB2"
TCGA.AA.3494	12	103362186	133777644	10647	0.2376	NEUTRAL	NA	249	Too-Many
TCGA.AA.3660	12	103529959	103834557	104	-0.0188	NEUTRAL	NA	1	C12orf42
TCGA.CM.6677	12	103800980	113573236	3075	-0.2928	NEUTRAL	NA	94	"ACACB,ACAD10,ALDH1L2,ALDH2,ALKBH2,ANAPC7,ANKRD13A,APPL2,ARPC3,ASCL4,ATP2A2,ATXN2,BRAP,BTBD11,C12orf42,C12orf45,C12orf73,C12orf75,C12orf76,CCDC63,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,CUX2,DAO,DTX1,EID3,ERP29,FAM109A,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLT8D2,GLTP,GPN3,HCFC2,HECTD4,HSP90B1,HVCN1,IFT81,ISCU,KCTD10,KIAA1033,MAPKAPK5,MMAB,MTERF2,MVK,MYL2,MYO1H,NAA25,NFYB,NT5DC3,NUAK1,OAS1,OAS2,OAS3,POLR3B,PPP1CC,PPTC7,PRDM4,PTPN11,PWP1,RAD9B,RASAL1,RFX4,RIC8B,RPH3A,RPL6,SART3,SELPLG,SH2B3,SLC41A2,SSH1,STAB2,SVOP,TCHP,TCP11L2,TCTN1,TDG,TMEM116,TMEM119,TMEM263,TRAFD1,TRPV4,TXNRD1,UBE3B,UNG,USP30,VPS29,WSCD2"
TCGA.AA.3660	12	103836145	107446840	1505	0.3441	NEUTRAL	NA	27	"ALDH1L2,APPL2,C12orf42,C12orf45,C12orf73,C12orf75,CHST11,CKAP4,CRY1,EID3,GLT8D2,HCFC2,HSP90B1,KIAA1033,MTERF2,NFYB,NT5DC3,NUAK1,POLR3B,RFX4,RIC8B,SLC41A2,STAB2,TCP11L2,TDG,TMEM263,TXNRD1"
TCGA.AA.3851	12	103864859	133777644	10482	-0.0825	NEUTRAL	NA	249	Too-Many
TCGA.AY.A71X	12	103893600	121126379	5968	-0.0503	NEUTRAL	NA	146	Too-Many
TCGA.AG.A00C.01A	12	104014197	104054400	13	0.2631	NEUTRAL	NA	1	STAB2
TCGA.AA.3850	12	104015925	106113319	922	0.22775	NEUTRAL	NA	17	"ALDH1L2,APPL2,C12orf45,C12orf73,C12orf75,CHST11,EID3,GLT8D2,HCFC2,HSP90B1,KIAA1033,NFYB,NT5DC3,SLC41A2,STAB2,TDG,TXNRD1"
TCGA.AG.A00C.01A	12	104056617	104529127	113	-0.0992	NEUTRAL	NA	8	"C12orf73,GLT8D2,HCFC2,HSP90B1,NFYB,NT5DC3,STAB2,TDG"
TCGA.CK.5914.01A	12	104060000	104107370	23	-0.1437	NEUTRAL	NA	1	STAB2
TCGA.AG.A01W.01A	12	104106132	111071909	763	-0.1386	NEUTRAL	NA	68	"ACACB,ALDH1L2,ALKBH2,ANAPC7,ANKRD13A,APPL2,ARPC3,ASCL4,ATP2A2,BTBD11,C12orf45,C12orf73,C12orf75,C12orf76,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,DAO,EID3,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLT8D2,GLTP,GPN3,HCFC2,HSP90B1,IFT81,ISCU,KCTD10,KIAA1033,MMAB,MTERF2,MVK,MYO1H,NFYB,NT5DC3,NUAK1,POLR3B,PPTC7,PRDM4,PWP1,RAD9B,RFX4,RIC8B,SART3,SELPLG,SLC41A2,SSH1,STAB2,SVOP,TCHP,TCP11L2,TCTN1,TDG,TMEM119,TMEM263,TRPV4,TXNRD1,UBE3B,UNG,USP30,VPS29,WSCD2"
TCGA.AA.A00D.01A	12	104126784	104156005	16	-0.4327	NEUTRAL	NA	1	STAB2
TCGA.AA.A00D.01A	12	104157243	104324219	15	-0.0471	NEUTRAL	NA	3	"HSP90B1,NT5DC3,STAB2"
TCGA.CK.5914.01A	12	104174013	104324219	13	0.1261	NEUTRAL	NA	2	"HSP90B1,NT5DC3"
TCGA.AA.A00N.01A	12	104174013	104326028	15	0.3378	NEUTRAL	NA	2	"HSP90B1,NT5DC3"
TCGA.AA.A01Q.01A	12	104174013	109185834	289	0.1342	NEUTRAL	NA	38	"ALDH1L2,APPL2,ASCL4,BTBD11,C12orf45,C12orf73,C12orf75,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,EID3,FICD,GLT8D2,HCFC2,HSP90B1,ISCU,KIAA1033,MTERF2,NFYB,NT5DC3,NUAK1,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,SELPLG,SLC41A2,SSH1,TCP11L2,TDG,TMEM119,TMEM263,TXNRD1,WSCD2"
TCGA.AA.A00D.01A	12	104325267	104492074	43	0.3174	NEUTRAL	NA	5	"C12orf73,GLT8D2,HCFC2,HSP90B1,TDG"
TCGA.AG.3909.01A	12	104325267	104681032	55	-0.0901	NEUTRAL	NA	7	"C12orf73,GLT8D2,HCFC2,HSP90B1,NFYB,TDG,TXNRD1"
TCGA.AA.A00N.01A	12	104326584	104682662	58	-0.344	NEUTRAL	NA	7	"C12orf73,GLT8D2,HCFC2,HSP90B1,NFYB,TDG,TXNRD1"
TCGA.AG.A00Y.01A	12	104332081	106461093	149	-0.1055	NEUTRAL	NA	16	"ALDH1L2,APPL2,C12orf45,C12orf73,C12orf75,CHST11,EID3,GLT8D2,HCFC2,HSP90B1,KIAA1033,NFYB,NUAK1,SLC41A2,TDG,TXNRD1"
TCGA.CK.5914.01A	12	104350359	104682662	45	-0.0205	NEUTRAL	NA	6	"C12orf73,GLT8D2,HCFC2,NFYB,TDG,TXNRD1"
TCGA.AA.A00L.01A	12	104380739	113900958	878	0.1122	NEUTRAL	NA	99	"ACACB,ACAD10,ALDH1L2,ALDH2,ALKBH2,ANAPC7,ANKRD13A,APPL2,ARPC3,ASCL4,ATP2A2,ATXN2,BRAP,BTBD11,C12orf45,C12orf75,C12orf76,CCDC42B,CCDC63,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,CUX2,DAO,DDX54,DTX1,EID3,ERP29,FAM109A,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLT8D2,GLTP,GPN3,HCFC2,HECTD4,HVCN1,IFT81,IQCD,ISCU,KCTD10,KIAA1033,LHX5,MAPKAPK5,MMAB,MTERF2,MVK,MYL2,MYO1H,NAA25,NFYB,NUAK1,OAS1,OAS2,OAS3,PLBD2,POLR3B,PPP1CC,PPTC7,PRDM4,PTPN11,PWP1,RAD9B,RASAL1,RFX4,RIC8B,RITA1,RPH3A,RPL6,SART3,SDS,SDSL,SELPLG,SH2B3,SLC41A2,SLC8B1,SSH1,SVOP,TCHP,TCP11L2,TCTN1,TDG,TMEM116,TMEM119,TMEM263,TPCN1,TRAFD1,TRPV4,TXNRD1,UBE3B,UNG,USP30,VPS29,WSCD2"
TCGA.AA.A010.01A	12	104387128	104496700	22	-0.3065	NEUTRAL	NA	2	"GLT8D2,HCFC2"
TCGA.AA.A00D.01A	12	104495699	110371757	415	-0.0157	NEUTRAL	NA	50	"ACACB,ALDH1L2,ALKBH2,APPL2,ASCL4,BTBD11,C12orf45,C12orf75,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,DAO,EID3,FAM222A,FICD,FOXN4,GIT2,GLTP,HCFC2,ISCU,KCTD10,KIAA1033,MMAB,MTERF2,MVK,MYO1H,NFYB,NUAK1,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,SELPLG,SLC41A2,SSH1,SVOP,TCHP,TCP11L2,TMEM119,TMEM263,TRPV4,TXNRD1,UBE3B,UNG,USP30,WSCD2"
TCGA.AG.A00C.01A	12	104645293	104681032	3	-0.4427	NEUTRAL	NA	1	TXNRD1
TCGA.AG.3906.01A	12	104651746	104706970	7	0.0785	NEUTRAL	NA	2	"EID3,TXNRD1"
TCGA.AG.3909.01A	12	104720067	105280054	15	0.0676	NEUTRAL	NA	3	"CHST11,SLC41A2,TXNRD1"
TCGA.AG.3891.01A	12	104721291	105519780	52	-0.009	NEUTRAL	NA	6	"ALDH1L2,C12orf45,CHST11,KIAA1033,SLC41A2,TXNRD1"
TCGA.AG.3906.01A	12	104727961	104995626	5	0.2198	NEUTRAL	NA	2	"CHST11,TXNRD1"
TCGA.CK.5914.01A	12	104727961	105501508	42	-0.1981	NEUTRAL	NA	6	"ALDH1L2,C12orf45,CHST11,KIAA1033,SLC41A2,TXNRD1"
TCGA.AG.4009.01A	12	104727961	108105841	198	-0.0798	NEUTRAL	NA	19	"ALDH1L2,APPL2,BTBD11,C12orf45,C12orf75,CHST11,CKAP4,CRY1,KIAA1033,MTERF2,NUAK1,POLR3B,PWP1,RFX4,RIC8B,SLC41A2,TCP11L2,TMEM263,TXNRD1"
TCGA.AA.A00N.01A	12	104732889	105282764	12	0.3643	NEUTRAL	NA	3	"CHST11,SLC41A2,TXNRD1"
TCGA.AG.A00C.01A	12	104742065	105280054	10	-0.192	NEUTRAL	NA	3	"CHST11,SLC41A2,TXNRD1"
TCGA.AA.A010.01A	12	104851141	108105841	209	0.09	NEUTRAL	NA	18	"ALDH1L2,APPL2,BTBD11,C12orf45,C12orf75,CHST11,CKAP4,CRY1,KIAA1033,MTERF2,NUAK1,POLR3B,PWP1,RFX4,RIC8B,SLC41A2,TCP11L2,TMEM263"
TCGA.CA.6716	12	104970235	105845158	380	-0.3653	NEUTRAL	NA	7	"ALDH1L2,APPL2,C12orf45,C12orf75,CHST11,KIAA1033,SLC41A2"
TCGA.AF.3914.01A	12	104995626	133778682	2493	-0.0366	NEUTRAL	NA	238	Too-Many
TCGA.AG.3906.01A	12	105150719	108135957	196	-0.0696	NEUTRAL	NA	19	"ALDH1L2,APPL2,BTBD11,C12orf45,C12orf75,CHST11,CKAP4,CRY1,KIAA1033,MTERF2,NUAK1,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SLC41A2,TCP11L2,TMEM263"
TCGA.AG.3732	12	105167286	133777644	9870	-0.003	NEUTRAL	NA	237	Too-Many
TCGA.AA.3941	12	105168764	106294364	469	0.2679	NEUTRAL	NA	6	"ALDH1L2,APPL2,C12orf45,C12orf75,KIAA1033,SLC41A2"
TCGA.AG.3909.01A	12	105418138	105443638	10	0.256	NEUTRAL	NA	1	ALDH1L2
TCGA.AG.A00C.01A	12	105418138	105458991	17	-0.255	NEUTRAL	NA	1	ALDH1L2
TCGA.AA.A00N.01A	12	105418138	105460297	18	0.2711	NEUTRAL	NA	1	ALDH1L2
TCGA.AG.3909.01A	12	105445851	105467602	11	-0.0519	NEUTRAL	NA	1	ALDH1L2
TCGA.AG.A00C.01A	12	105460297	105520890	14	0.3077	NEUTRAL	NA	2	"ALDH1L2,KIAA1033"
TCGA.AG.3909.01A	12	105514852	105536193	9	-0.1924	NEUTRAL	NA	1	KIAA1033
TCGA.AG.3891.01A	12	105520890	105568044	21	-0.3053	NEUTRAL	NA	2	"APPL2,KIAA1033"
TCGA.AG.A00C.01A	12	105527500	108954817	190	-0.1358	NEUTRAL	NA	20	"APPL2,ASCL4,BTBD11,C12orf75,CKAP4,CMKLR1,CRY1,FICD,KIAA1033,MTERF2,NUAK1,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,TCP11L2,TMEM263,WSCD2"
TCGA.CK.5914.01A	12	105531617	105536857	5	-0.2239	NEUTRAL	NA	1	KIAA1033
TCGA.AG.3909.01A	12	105536857	106532145	38	0.3719	NEUTRAL	NA	4	"APPL2,C12orf75,KIAA1033,NUAK1"
TCGA.CK.5914.01A	12	105538013	105591494	21	0.3738	NEUTRAL	NA	2	"APPL2,KIAA1033"
TCGA.DM.A28M.01A	12	105540773	133778682	2608	0.1376	NEUTRAL	NA	234	Too-Many
TCGA.AZ.4684.01A	12	105546071	122964687	1734	-0.1106	NEUTRAL	NA	161	Too-Many
TCGA.AA.3930.01A	12	105553731	105570614	8	-0.4686	NEUTRAL	NA	2	"APPL2,KIAA1033"
TCGA.AG.3891.01A	12	105569766	112103393	617	0.1198	NEUTRAL	NA	62	"ACACB,ALKBH2,ANAPC7,ANKRD13A,APPL2,ARPC3,ASCL4,ATP2A2,ATXN2,BRAP,BTBD11,C12orf75,C12orf76,CCDC63,CKAP4,CMKLR1,CORO1C,CRY1,CUX2,DAO,FAM109A,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLTP,GPN3,HVCN1,IFT81,ISCU,KCTD10,MMAB,MTERF2,MVK,MYL2,MYO1H,NUAK1,POLR3B,PPP1CC,PPTC7,PRDM4,PWP1,RAD9B,RFX4,RIC8B,SART3,SELPLG,SH2B3,SSH1,SVOP,TCHP,TCP11L2,TCTN1,TMEM119,TMEM263,TRPV4,UBE3B,UNG,USP30,VPS29,WSCD2"
TCGA.AA.3930.01A	12	105582024	133778682	2541	0.1638	NEUTRAL	NA	233	Too-Many
TCGA.CK.5914.01A	12	105593122	106773758	41	-0.2756	NEUTRAL	NA	6	"APPL2,C12orf75,CKAP4,NUAK1,POLR3B,TCP11L2"
TCGA.AA.A00N.01A	12	105601697	105761161	10	-0.1503	NEUTRAL	NA	2	"APPL2,C12orf75"
TCGA.CA.6716	12	105845485	107253482	596	0.0282	NEUTRAL	NA	6	"CKAP4,NUAK1,POLR3B,RFX4,RIC8B,TCP11L2"
TCGA.AA.3850	12	106113789	106367489	147	-0.29535	NEUTRAL	NA	0	None
TCGA.AA.3941	12	106317264	108808022	994	0.3298	NEUTRAL	NA	15	"ASCL4,BTBD11,CKAP4,CMKLR1,CRY1,MTERF2,NUAK1,POLR3B,PRDM4,PWP1,RFX4,RIC8B,TCP11L2,TMEM263,WSCD2"
TCGA.AA.3870	12	106317264	133777644	9400	0.0436	NEUTRAL	NA	231	Too-Many
TCGA.AA.3850	12	106367577	108855523	969	0.11145	NEUTRAL	NA	15	"ASCL4,BTBD11,CKAP4,CMKLR1,CRY1,MTERF2,NUAK1,POLR3B,PRDM4,PWP1,RFX4,RIC8B,TCP11L2,TMEM263,WSCD2"
TCGA.AG.A011.01A	12	106460553	109610020	226	0.0895	NEUTRAL	NA	28	"ACACB,ALKBH2,ASCL4,BTBD11,CKAP4,CMKLR1,CORO1C,CRY1,DAO,FICD,ISCU,MTERF2,NUAK1,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,SELPLG,SSH1,SVOP,TCP11L2,TMEM119,TMEM263,UNG,USP30,WSCD2"
TCGA.AG.A032.01A	12	106460553	133778682	2167	-0.0691	NEUTRAL	NA	231	Too-Many
TCGA.AG.A00Y.01A	12	106464515	133778682	2293	0.3088	NEUTRAL	NA	231	Too-Many
TCGA.AA.A00N.01A	12	106500166	106773758	22	-0.3377	NEUTRAL	NA	4	"CKAP4,NUAK1,POLR3B,TCP11L2"
TCGA.EI.6883	12	106566173	114399156	2084	-0.0066	NEUTRAL	NA	86	"ACACB,ACAD10,ALDH2,ALKBH2,ANAPC7,ANKRD13A,ARPC3,ASCL4,ATP2A2,ATXN2,BRAP,BTBD11,C12orf76,CCDC42B,CCDC63,CKAP4,CMKLR1,CORO1C,CRY1,CUX2,DAO,DDX54,DTX1,ERP29,FAM109A,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,IQCD,ISCU,KCTD10,LHX5,MAPKAPK5,MMAB,MTERF2,MVK,MYL2,MYO1H,NAA25,OAS1,OAS2,OAS3,PLBD2,POLR3B,PPP1CC,PPTC7,PRDM4,PTPN11,PWP1,RAD9B,RASAL1,RBM19,RFX4,RIC8B,RITA1,RPH3A,RPL6,SART3,SDS,SDSL,SELPLG,SH2B3,SLC8B1,SSH1,SVOP,TCHP,TCP11L2,TCTN1,TMEM116,TMEM119,TMEM263,TPCN1,TRAFD1,TRPV4,UBE3B,UNG,USP30,VPS29,WSCD2"
TCGA.AG.3909.01A	12	106632765	106770116	17	-0.1935	NEUTRAL	NA	3	"CKAP4,POLR3B,TCP11L2"
TCGA.AG.3909.01A	12	106771993	107279650	49	0.3726	NEUTRAL	NA	3	"POLR3B,RFX4,RIC8B"
TCGA.CK.5914.01A	12	106786760	108603851	108	0.1377	NEUTRAL	NA	11	"ASCL4,BTBD11,CRY1,MTERF2,POLR3B,PRDM4,PWP1,RFX4,RIC8B,TMEM263,WSCD2"
TCGA.AG.A015.01A	12	107002567	110815200	403	0.2985	NEUTRAL	NA	40	"ACACB,ALKBH2,ANAPC7,ANKRD13A,ASCL4,ATP2A2,BTBD11,C12orf76,CMKLR1,CORO1C,CRY1,DAO,FAM222A,FICD,FOXN4,GIT2,GLTP,IFT81,ISCU,KCTD10,MMAB,MTERF2,MVK,MYO1H,PRDM4,PWP1,RFX4,RIC8B,SART3,SELPLG,SSH1,SVOP,TCHP,TMEM119,TMEM263,TRPV4,UBE3B,UNG,USP30,WSCD2"
TCGA.CA.6716	12	107270947	115769757	2548	-0.2696	NEUTRAL	NA	84	"ACACB,ACAD10,ALDH2,ALKBH2,ANAPC7,ANKRD13A,ARPC3,ASCL4,ATP2A2,ATXN2,BRAP,BTBD11,C12orf76,CCDC42B,CCDC63,CMKLR1,CORO1C,CRY1,CUX2,DAO,DDX54,DTX1,ERP29,FAM109A,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,IQCD,ISCU,KCTD10,LHX5,MAPKAPK5,MMAB,MTERF2,MVK,MYL2,MYO1H,NAA25,OAS1,OAS2,OAS3,PLBD2,PPP1CC,PPTC7,PRDM4,PTPN11,PWP1,RAD9B,RASAL1,RBM19,RIC8B,RITA1,RPH3A,RPL6,SART3,SDS,SDSL,SELPLG,SH2B3,SLC8B1,SSH1,SVOP,TBX3,TBX5,TCHP,TCTN1,TMEM116,TMEM119,TMEM263,TPCN1,TRAFD1,TRPV4,UBE3B,UNG,USP30,VPS29,WSCD2"
TCGA.AA.3660	12	107452784	108873871	613	-0.0027	NEUTRAL	NA	7	"ASCL4,BTBD11,CMKLR1,CRY1,PRDM4,PWP1,WSCD2"
TCGA.RU.A8FL	12	107840892	125240994	5203	-0.1281	NEUTRAL	NA	182	Too-Many
TCGA.AA.3968	12	108017672	130141149	7592	0.0244	NEUTRAL	NA	192	Too-Many
TCGA.AG.3906.01A	12	108168956	109703989	145	-0.046	NEUTRAL	NA	16	"ACACB,ALKBH2,ASCL4,CMKLR1,CORO1C,DAO,FICD,ISCU,SART3,SELPLG,SSH1,SVOP,TMEM119,UNG,USP30,WSCD2"
TCGA.A6.2672	12	108516001	131190442	7949	-0.3575	NEUTRAL	NA	191	Too-Many
TCGA.AG.4009.01A	12	108589558	109016824	36	0.1861	NEUTRAL	NA	7	"CMKLR1,FICD,ISCU,SART3,SELPLG,TMEM119,WSCD2"
TCGA.A6.5665	12	108720351	130201127	7328	-0.2568	NEUTRAL	NA	187	Too-Many
TCGA.AA.3660	12	108874216	111527374	534	0.3323	NEUTRAL	NA	41	"ACACB,ALKBH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,C12orf76,CCDC63,CORO1C,CUX2,DAO,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLTP,GPN3,HVCN1,IFT81,ISCU,KCTD10,MMAB,MVK,MYL2,MYO1H,PPP1CC,PPTC7,RAD9B,SART3,SELPLG,SSH1,SVOP,TCHP,TCTN1,TMEM119,TRPV4,UBE3B,UNG,USP30,VPS29"
TCGA.AA.A00Q.01A	12	108910713	108929088	10	-0.3694	NEUTRAL	NA	2	"FICD,SART3"
TCGA.CK.5914.01A	12	108910713	108954817	21	0.0032	NEUTRAL	NA	2	"FICD,SART3"
TCGA.AG.3909.01A	12	108910713	109211986	48	-0.5095	NEUTRAL	NA	7	"CORO1C,FICD,ISCU,SART3,SELPLG,SSH1,TMEM119"
TCGA.AG.A01N.01A	12	108912140	133778682	2156	-0.342	NEUTRAL	NA	216	Too-Many
TCGA.AA.A010.01A	12	108923870	108942812	13	-0.1571	NEUTRAL	NA	1	SART3
TCGA.AA.A00Q.01A	12	108930243	108941624	8	0.1629	NEUTRAL	NA	1	SART3
TCGA.AA.A00Q.01A	12	108942812	109211986	30	-0.1588	NEUTRAL	NA	6	"CORO1C,ISCU,SART3,SELPLG,SSH1,TMEM119"
TCGA.AA.A02H.01A	12	108942812	133778682	2034	-0.2401	NEUTRAL	NA	215	Too-Many
TCGA.AA.A00F.01A	12	108954817	109052473	13	0.2895	NEUTRAL	NA	5	"CORO1C,ISCU,SART3,SELPLG,TMEM119"
TCGA.CK.5914.01A	12	108957816	109211986	27	-0.4796	NEUTRAL	NA	5	"CORO1C,ISCU,SELPLG,SSH1,TMEM119"
TCGA.AA.A029.01A	12	109016824	133778682	1999	0.0174	NEUTRAL	NA	212	Too-Many
TCGA.AG.A00C.01A	12	109052473	109332554	37	-0.1147	NEUTRAL	NA	4	"CORO1C,DAO,SSH1,SVOP"
TCGA.AA.A00F.01A	12	109055758	115120600	658	0.0212	NEUTRAL	NA	69	"ACACB,ACAD10,ALDH2,ALKBH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC42B,CCDC63,CORO1C,CUX2,DAO,DDX54,DTX1,ERP29,FAM109A,FAM216A,FAM222A,FOXN4,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,IQCD,KCTD10,LHX5,MAPKAPK5,MMAB,MVK,MYL2,MYO1H,NAA25,OAS1,OAS2,OAS3,PLBD2,PPP1CC,PPTC7,PTPN11,RAD9B,RASAL1,RBM19,RITA1,RPH3A,RPL6,SDS,SDSL,SH2B3,SLC8B1,SSH1,SVOP,TBX3,TBX5,TCHP,TCTN1,TMEM116,TPCN1,TRAFD1,TRPV4,UBE3B,UNG,USP30,VPS29"
TCGA.AA.A00N.01A	12	109071999	109246337	18	0.0348	NEUTRAL	NA	2	"CORO1C,SSH1"
TCGA.AG.4009.01A	12	109094848	109605659	58	0.1222	NEUTRAL	NA	8	"ACACB,ALKBH2,CORO1C,DAO,SSH1,SVOP,UNG,USP30"
TCGA.AG.A01J.01A	12	109201360	133778682	2041	-0.2651	NEUTRAL	NA	210	Too-Many
TCGA.AA.A00Q.01A	12	109216993	109522721	26	0.2677	NEUTRAL	NA	4	"DAO,SSH1,SVOP,USP30"
TCGA.AA.A01Q.01A	12	109230635	109962179	116	0.0127	NEUTRAL	NA	11	"ACACB,ALKBH2,DAO,FOXN4,KCTD10,MYO1H,SSH1,SVOP,UBE3B,UNG,USP30"
TCGA.CK.5914.01A	12	109494450	109536121	16	-0.3353	NEUTRAL	NA	3	"ALKBH2,UNG,USP30"
TCGA.AG.A00C.01A	12	109494450	109577193	21	0.3208	NEUTRAL	NA	3	"ALKBH2,UNG,USP30"
TCGA.AA.A00N.01A	12	109505282	109536121	14	-0.444	NEUTRAL	NA	3	"ALKBH2,UNG,USP30"
TCGA.AA.A00Q.01A	12	109523445	109605659	14	-0.1597	NEUTRAL	NA	4	"ACACB,ALKBH2,UNG,USP30"
TCGA.CK.5914.01A	12	109577193	109870652	74	0.3689	NEUTRAL	NA	3	"ACACB,FOXN4,MYO1H"
TCGA.AG.A00C.01A	12	109604639	109998800	113	-0.1588	NEUTRAL	NA	6	"ACACB,FOXN4,KCTD10,MMAB,MYO1H,UBE3B"
TCGA.AG.4009.01A	12	109609560	109631393	10	-0.1496	NEUTRAL	NA	1	ACACB
TCGA.AA.A00Q.01A	12	109609560	109702009	42	0.2426	NEUTRAL	NA	1	ACACB
TCGA.AG.A011.01A	12	109611900	110454129	171	-0.232	NEUTRAL	NA	13	"ACACB,ANKRD13A,FAM222A,FOXN4,GIT2,GLTP,KCTD10,MMAB,MVK,MYO1H,TCHP,TRPV4,UBE3B"
TCGA.AG.4009.01A	12	109634766	109723101	36	0.2981	NEUTRAL	NA	2	"ACACB,FOXN4"
TCGA.AA.A00Q.01A	12	109702863	109994786	39	-0.1329	NEUTRAL	NA	6	"ACACB,FOXN4,KCTD10,MMAB,MYO1H,UBE3B"
TCGA.AG.3906.01A	12	109717449	109876307	26	0.3582	NEUTRAL	NA	2	"FOXN4,MYO1H"
TCGA.AA.A01C.01A	12	109719181	112620835	423	-0.3324	NEUTRAL	NA	40	"ACAD10,ALDH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC63,CUX2,ERP29,FAM109A,FAM216A,FAM222A,FOXN4,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,KCTD10,MAPKAPK5,MMAB,MVK,MYL2,MYO1H,NAA25,PPP1CC,PPTC7,RAD9B,SH2B3,TCHP,TCTN1,TMEM116,TRAFD1,TRPV4,UBE3B,VPS29"
TCGA.AG.4009.01A	12	109724424	109841738	7	-0.2008	NEUTRAL	NA	2	"FOXN4,MYO1H"
TCGA.AG.4009.01A	12	109843698	109972344	54	0.252	NEUTRAL	NA	3	"KCTD10,MYO1H,UBE3B"
TCGA.AG.3909.01A	12	109872779	109898404	16	-0.291	NEUTRAL	NA	2	"KCTD10,MYO1H"
TCGA.CK.5914.01A	12	109872779	109999523	47	-0.1563	NEUTRAL	NA	4	"KCTD10,MMAB,MYO1H,UBE3B"
TCGA.AG.3906.01A	12	109877409	109994786	40	-0.0783	NEUTRAL	NA	4	"KCTD10,MMAB,MYO1H,UBE3B"
TCGA.AA.3509.01A	12	109884896	122720286	1350	-0.1621	NEUTRAL	NA	127	Too-Many
TCGA.AG.3909.01A	12	109907292	109972344	26	0.3557	NEUTRAL	NA	2	"KCTD10,UBE3B"
TCGA.A6.3808.01A	12	109972344	110503571	93	-0.1368	NEUTRAL	NA	10	"ANKRD13A,C12orf76,FAM222A,GIT2,GLTP,MMAB,MVK,TCHP,TRPV4,UBE3B"
TCGA.AA.A010.01A	12	109994786	110028996	17	-0.3777	NEUTRAL	NA	2	"MMAB,MVK"
TCGA.AG.4009.01A	12	109994786	110028996	15	-0.4548	NEUTRAL	NA	2	"MMAB,MVK"
TCGA.AG.3909.01A	12	109994786	110034179	16	-0.4529	NEUTRAL	NA	2	"MMAB,MVK"
TCGA.AG.3906.01A	12	109996834	112130472	265	0.1841	NEUTRAL	NA	29	"ACAD10,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC63,CUX2,FAM109A,FAM216A,FAM222A,GIT2,GLTP,GPN3,HVCN1,IFT81,MMAB,MVK,MYL2,PPP1CC,PPTC7,RAD9B,SH2B3,TCHP,TCTN1,TRPV4,VPS29"
TCGA.AA.A00Q.01A	12	109996834	113543467	391	0.2122	NEUTRAL	NA	44	"ACAD10,ALDH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC63,CUX2,DTX1,ERP29,FAM109A,FAM216A,FAM222A,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,MAPKAPK5,MMAB,MVK,MYL2,NAA25,OAS1,OAS2,OAS3,PPP1CC,PPTC7,PTPN11,RAD9B,RASAL1,RPH3A,RPL6,SH2B3,TCHP,TCTN1,TMEM116,TRAFD1,TRPV4,VPS29"
TCGA.AA.A00N.01A	12	109999523	110418713	64	-0.0887	NEUTRAL	NA	7	"FAM222A,GIT2,GLTP,MMAB,MVK,TCHP,TRPV4"
TCGA.AG.A00C.01A	12	110002853	110028545	9	0.349	NEUTRAL	NA	2	"MMAB,MVK"
TCGA.AG.3611.01A	12	110011104	110019153	5	-0.2222	NEUTRAL	NA	2	"MMAB,MVK"
TCGA.AG.3611.01A	12	110023780	110841292	117	0.3525	NEUTRAL	NA	11	"ANAPC7,ANKRD13A,ATP2A2,C12orf76,FAM222A,GIT2,GLTP,IFT81,MVK,TCHP,TRPV4"
TCGA.CK.5914.01A	12	110028545	110503571	77	-0.1779	NEUTRAL	NA	8	"ANKRD13A,C12orf76,FAM222A,GIT2,GLTP,MVK,TCHP,TRPV4"
TCGA.AG.A00C.01A	12	110028996	110252229	21	-0.2212	NEUTRAL	NA	3	"FAM222A,MVK,TRPV4"
TCGA.AG.4009.01A	12	110032813	110783789	105	-0.1491	NEUTRAL	NA	10	"ANKRD13A,ATP2A2,C12orf76,FAM222A,GIT2,GLTP,IFT81,MVK,TCHP,TRPV4"
TCGA.AG.3909.01A	12	110181891	110318040	23	0.3584	NEUTRAL	NA	3	"FAM222A,GLTP,TRPV4"
TCGA.AA.A01Q.01A	12	110221378	113495948	368	0.0983	NEUTRAL	NA	40	"ACAD10,ALDH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC63,CUX2,DTX1,ERP29,FAM109A,FAM216A,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,MAPKAPK5,MYL2,NAA25,OAS1,OAS2,OAS3,PPP1CC,PPTC7,PTPN11,RAD9B,RPH3A,RPL6,SH2B3,TCHP,TCTN1,TMEM116,TRAFD1,TRPV4,VPS29"
TCGA.AG.A00C.01A	12	110290311	112229844	257	0.1139	NEUTRAL	NA	26	"ACAD10,ALDH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC63,CUX2,FAM109A,FAM216A,GIT2,GLTP,GPN3,HVCN1,IFT81,MYL2,PPP1CC,PPTC7,RAD9B,SH2B3,TCHP,TCTN1,VPS29"
TCGA.AA.A010.01A	12	110348828	110405070	19	0.3511	NEUTRAL	NA	2	"GIT2,TCHP"
TCGA.AA.A00D.01A	12	110376138	110390850	7	-0.391	NEUTRAL	NA	1	GIT2
TCGA.AA.A00D.01A	12	110397605	110503571	28	0.1738	NEUTRAL	NA	3	"ANKRD13A,C12orf76,GIT2"
TCGA.AA.A010.01A	12	110418713	110468413	18	-0.4138	NEUTRAL	NA	2	"ANKRD13A,GIT2"
TCGA.AG.3909.01A	12	110418713	110734363	43	-0.1775	NEUTRAL	NA	5	"ANKRD13A,ATP2A2,C12orf76,GIT2,IFT81"
TCGA.AG.A011.01A	12	110456103	133778682	1855	0.0973	NEUTRAL	NA	192	Too-Many
TCGA.AA.A010.01A	12	110600677	110655854	8	-0.0305	NEUTRAL	NA	1	IFT81
TCGA.AA.A00N.01A	12	110628673	110760740	11	-0.2019	NEUTRAL	NA	2	"ATP2A2,IFT81"
TCGA.CK.5914.01A	12	110630370	110826289	31	0	NEUTRAL	NA	3	"ANAPC7,ATP2A2,IFT81"
TCGA.A6.3808.01A	12	110719547	113132792	349	-0.181	NEUTRAL	NA	28	"ACAD10,ALDH2,ANAPC7,ARPC3,ATP2A2,ATXN2,BRAP,CCDC63,CUX2,ERP29,FAM109A,FAM216A,GPN3,HECTD4,HVCN1,MAPKAPK5,MYL2,NAA25,PPP1CC,PPTC7,PTPN11,RAD9B,RPL6,SH2B3,TCTN1,TMEM116,TRAFD1,VPS29"
TCGA.AA.A00D.01A	12	110760740	113837352	360	0.0625	NEUTRAL	NA	42	"ACAD10,ALDH2,ANAPC7,ARPC3,ATP2A2,ATXN2,BRAP,CCDC42B,CCDC63,CUX2,DDX54,DTX1,ERP29,FAM109A,FAM216A,GPN3,HECTD4,HVCN1,IQCD,MAPKAPK5,MYL2,NAA25,OAS1,OAS2,OAS3,PLBD2,PPP1CC,PPTC7,PTPN11,RAD9B,RASAL1,RITA1,RPH3A,RPL6,SDS,SH2B3,SLC8B1,TCTN1,TMEM116,TPCN1,TRAFD1,VPS29"
TCGA.AG.3909.01A	12	110813820	110834039	9	0.0627	NEUTRAL	NA	1	ANAPC7
TCGA.AG.A01L.01A	12	110819540	110910804	22	-0.3091	NEUTRAL	NA	4	"ANAPC7,ARPC3,FAM216A,GPN3"
TCGA.AG.A015.01A	12	110819540	110959935	41	-0.0353	NEUTRAL	NA	6	"ANAPC7,ARPC3,FAM216A,GPN3,RAD9B,VPS29"
TCGA.AG.3909.01A	12	110910804	110937248	9	-0.1338	NEUTRAL	NA	2	"FAM216A,VPS29"
TCGA.AG.A01L.01A	12	110922833	110952807	14	-0.0238	NEUTRAL	NA	3	"FAM216A,RAD9B,VPS29"
TCGA.AG.4009.01A	12	110922833	111098929	42	0.0576	NEUTRAL	NA	6	"FAM216A,HVCN1,PPTC7,RAD9B,TCTN1,VPS29"
TCGA.AA.A00N.01A	12	110937248	111098929	39	0.2365	NEUTRAL	NA	5	"HVCN1,PPTC7,RAD9B,TCTN1,VPS29"
TCGA.AG.3909.01A	12	110941549	111087161	30	0.2247	NEUTRAL	NA	4	"HVCN1,PPTC7,RAD9B,TCTN1"
TCGA.CK.5914.01A	12	110950557	111318882	45	-0.1667	NEUTRAL	NA	6	"CCDC63,HVCN1,PPP1CC,PPTC7,RAD9B,TCTN1"
TCGA.AG.A015.01A	12	110968293	120148800	667	0.3026	NEUTRAL	NA	63	"ACAD10,ALDH2,ATXN2,BRAP,C12orf49,CCDC42B,CCDC60,CCDC63,CIT,CUX2,DDX54,DTX1,ERP29,FAM109A,FBXO21,FBXW8,HECTD4,HRK,HSPB8,HVCN1,IQCD,KSR2,LHX5,MAP1LC3B2,MAPKAPK5,MED13L,MYL2,NAA25,NOS1,OAS1,OAS2,OAS3,PEBP1,PLBD2,PPP1CC,PPTC7,PRKAB1,PTPN11,RAD9B,RASAL1,RBM19,RFC5,RITA1,RNFT2,RPH3A,RPL6,SDS,SDSL,SH2B3,SLC8B1,SRRM4,SUDS3,TAOK3,TBX3,TBX5,TCTN1,TESC,TMEM116,TMEM233,TPCN1,TRAFD1,VSIG10,WSB2"
TCGA.AG.A01L.01A	12	110968293	122284717	976	0.0632	NEUTRAL	NA	99	"ACAD10,ACADS,ALDH2,ANAPC5,ATXN2,BRAP,C12orf43,C12orf49,CABP1,CAMKK2,CCDC42B,CCDC60,CCDC63,CCDC64,CIT,COQ5,COX6A1,CUX2,DDX54,DTX1,DYNLL1,ERP29,FAM109A,FBXO21,FBXW8,GATC,GCN1L1,HECTD4,HNF1A,HPD,HRK,HSPB8,HVCN1,IQCD,KDM2B,KSR2,LHX5,MAP1LC3B2,MAPKAPK5,MED13L,MLEC,MORN3,MSI1,MYL2,NAA25,NOS1,OAS1,OAS2,OAS3,OASL,ORAI1,P2RX4,P2RX7,PEBP1,PLA2G1B,PLBD2,POP5,PPP1CC,PPTC7,PRKAB1,PTPN11,PXN,RAB35,RAD9B,RASAL1,RBM19,RFC5,RHOF,RITA1,RNF10,RNF34,RNFT2,RPH3A,RPL6,RPLP0,SDS,SDSL,SETD1B,SH2B3,SIRT4,SLC8B1,SPPL3,SRRM4,SRSF9,SUDS3,TAOK3,TBX3,TBX5,TCTN1,TESC,TMEM116,TMEM120B,TMEM233,TPCN1,TRAFD1,TRIAP1,UNC119B,VSIG10,WSB2"
TCGA.AG.A01W.01A	12	111094810	112218101	198	-0.048	NEUTRAL	NA	11	"ACAD10,ALDH2,ATXN2,BRAP,CCDC63,CUX2,FAM109A,HVCN1,MYL2,PPP1CC,SH2B3"
TCGA.AG.3909.01A	12	111120943	111317672	12	-0.2717	NEUTRAL	NA	3	"CCDC63,HVCN1,PPP1CC"
TCGA.AG.4009.01A	12	111120943	111336690	16	-0.2647	NEUTRAL	NA	3	"CCDC63,HVCN1,PPP1CC"
TCGA.AA.A010.01A	12	111158826	112590469	173	0.0639	NEUTRAL	NA	15	"ACAD10,ALDH2,ATXN2,BRAP,CCDC63,CUX2,ERP29,FAM109A,MAPKAPK5,MYL2,NAA25,PPP1CC,SH2B3,TMEM116,TRAFD1"
TCGA.CK.5914.01A	12	111321786	111923530	43	0.3368	NEUTRAL	NA	6	"ATXN2,CCDC63,CUX2,FAM109A,MYL2,SH2B3"
TCGA.AG.4009.01A	12	111342342	111902416	32	0.1409	NEUTRAL	NA	6	"ATXN2,CCDC63,CUX2,FAM109A,MYL2,SH2B3"
TCGA.AG.3909.01A	12	111744678	111926259	23	0.2571	NEUTRAL	NA	4	"ATXN2,CUX2,FAM109A,SH2B3"
TCGA.AG.4009.01A	12	111907860	111926259	6	-0.139	NEUTRAL	NA	1	ATXN2
TCGA.AG.3909.01A	12	111958630	112110416	14	0.3053	NEUTRAL	NA	2	"ATXN2,BRAP"
TCGA.AG.4009.01A	12	111958630	112110416	14	-0.0132	NEUTRAL	NA	2	"ATXN2,BRAP"
TCGA.CK.5914.01A	12	111990067	112103393	11	0.3356	NEUTRAL	NA	2	"ATXN2,BRAP"
TCGA.AG.4008	12	112062874	133777644	7695	0.0065	NEUTRAL	NA	172	Too-Many
TCGA.AG.3909.01A	12	112116938	112228189	27	-0.4229	NEUTRAL	NA	3	"ACAD10,ALDH2,BRAP"
TCGA.AG.3891.01A	12	112167558	115109599	349	0.0755	NEUTRAL	NA	29	"ACAD10,ALDH2,CCDC42B,DDX54,DTX1,ERP29,HECTD4,IQCD,LHX5,MAPKAPK5,NAA25,OAS1,OAS2,OAS3,PLBD2,PTPN11,RASAL1,RBM19,RITA1,RPH3A,RPL6,SDS,SDSL,SLC8B1,TBX3,TBX5,TMEM116,TPCN1,TRAFD1"
TCGA.AG.4009.01A	12	112174618	112720873	136	-0.0746	NEUTRAL	NA	8	"ACAD10,ALDH2,ERP29,HECTD4,MAPKAPK5,NAA25,TMEM116,TRAFD1"
TCGA.AG.3906.01A	12	112182480	117612409	416	-0.0409	NEUTRAL	NA	37	"ACAD10,ALDH2,C12orf49,CCDC42B,DDX54,DTX1,ERP29,FBXO21,FBXW8,HECTD4,HRK,IQCD,LHX5,MAP1LC3B2,MAPKAPK5,MED13L,NAA25,OAS1,OAS2,OAS3,PLBD2,PTPN11,RASAL1,RBM19,RITA1,RNFT2,RPH3A,RPL6,SDS,SDSL,SLC8B1,TBX3,TBX5,TESC,TMEM116,TPCN1,TRAFD1"
TCGA.AG.A01W.01A	12	112221919	112360024	35	-0.4324	NEUTRAL	NA	2	"ALDH2,MAPKAPK5"
TCGA.AA.A00N.01A	12	112228189	112642273	89	-0.0745	NEUTRAL	NA	7	"ALDH2,ERP29,HECTD4,MAPKAPK5,NAA25,TMEM116,TRAFD1"
TCGA.CK.5914.01A	12	112229060	112371638	24	0.2802	NEUTRAL	NA	3	"ALDH2,MAPKAPK5,TMEM116"
TCGA.AG.3909.01A	12	112229060	112374914	25	0.367	NEUTRAL	NA	3	"ALDH2,MAPKAPK5,TMEM116"
TCGA.AG.A00C.01A	12	112230374	112241614	4	-0.4318	NEUTRAL	NA	1	ALDH2
TCGA.AG.A00C.01A	12	112247263	112646251	81	0.0095	NEUTRAL	NA	7	"ALDH2,ERP29,HECTD4,MAPKAPK5,NAA25,TMEM116,TRAFD1"
TCGA.CK.5914.01A	12	112374449	112642273	64	-0.1837	NEUTRAL	NA	5	"ERP29,HECTD4,NAA25,TMEM116,TRAFD1"
TCGA.AG.3909.01A	12	112375901	112467306	6	-0.2182	NEUTRAL	NA	3	"ERP29,NAA25,TMEM116"
TCGA.AG.3731	12	112448484	133777644	7715	0.0177	NEUTRAL	NA	168	Too-Many
TCGA.AG.3909.01A	12	112470990	112525437	20	0.2272	NEUTRAL	NA	1	NAA25
TCGA.AA.3862.01A	12	112480860	113565547	184	0.3241	NEUTRAL	NA	11	"DTX1,HECTD4,NAA25,OAS1,OAS2,OAS3,PTPN11,RASAL1,RPH3A,RPL6,TRAFD1"
TCGA.F4.6461	12	112509676	114022917	350	-0.0194	NEUTRAL	NA	21	"CCDC42B,DDX54,DTX1,HECTD4,IQCD,LHX5,NAA25,OAS1,OAS2,OAS3,PLBD2,PTPN11,RASAL1,RITA1,RPH3A,RPL6,SDS,SDSL,SLC8B1,TPCN1,TRAFD1"
TCGA.AG.3909.01A	12	112528503	112646251	36	-0.2472	NEUTRAL	NA	3	"HECTD4,NAA25,TRAFD1"
TCGA.AA.A01C.01A	12	112621970	120590998	539	-0.0227	NEUTRAL	NA	47	"C12orf49,CCDC42B,CCDC60,CCDC64,CIT,DDX54,DTX1,FBXO21,FBXW8,GCN1L1,HECTD4,HRK,HSPB8,IQCD,KSR2,LHX5,MAP1LC3B2,MED13L,NOS1,OAS1,OAS2,OAS3,PEBP1,PLBD2,PRKAB1,PTPN11,RAB35,RASAL1,RBM19,RFC5,RITA1,RNFT2,RPH3A,RPL6,SDS,SDSL,SLC8B1,SRRM4,SUDS3,TAOK3,TBX3,TBX5,TESC,TMEM233,TPCN1,VSIG10,WSB2"
TCGA.AG.A00C.01A	12	112647781	112743821	39	-0.2642	NEUTRAL	NA	1	HECTD4
TCGA.CK.5914.01A	12	112677635	112743821	24	-0.021	NEUTRAL	NA	1	HECTD4
TCGA.QG.A5Z1	12	112740314	133777644	7602	-0.0632	NEUTRAL	NA	164	Too-Many
TCGA.AG.A01W.01A	12	112745364	113323964	31	-0.2825	NEUTRAL	NA	4	"HECTD4,PTPN11,RPH3A,RPL6"
TCGA.A6.A567	12	112817846	133777644	7618	-0.4049	NEUTRAL	NA	164	Too-Many
TCGA.AG.3909.01A	12	112843121	112846417	7	-0.3084	NEUTRAL	NA	1	RPL6
TCGA.AA.A00N.01A	12	112856822	113285449	18	0.2605	NEUTRAL	NA	2	"PTPN11,RPH3A"
TCGA.AG.3909.01A	12	112884043	112924281	9	0.3459	NEUTRAL	NA	1	PTPN11
TCGA.CK.5914.01A	12	112884043	113132792	14	0.179	NEUTRAL	NA	1	PTPN11
TCGA.AG.A00C.01A	12	112884043	113446842	63	-0.1965	NEUTRAL	NA	5	"OAS1,OAS2,OAS3,PTPN11,RPH3A"
TCGA.AG.4009.01A	12	112893707	113875640	154	0.1398	NEUTRAL	NA	16	"CCDC42B,DDX54,DTX1,IQCD,OAS1,OAS2,OAS3,PLBD2,PTPN11,RASAL1,RITA1,RPH3A,SDS,SDSL,SLC8B1,TPCN1"
TCGA.AG.3909.01A	12	112926182	112942482	4	-0.1778	NEUTRAL	NA	1	PTPN11
TCGA.AA.3941	12	112999062	113120652	33	0.2677	NEUTRAL	NA	0	None
TCGA.F5.6812	12	113125310	133777644	7604	0.146	NEUTRAL	NA	161	Too-Many
TCGA.AA.3850	12	113163492	114536294	500	0.31285	NEUTRAL	NA	17	"CCDC42B,DDX54,DTX1,IQCD,LHX5,OAS1,OAS2,OAS3,PLBD2,RASAL1,RBM19,RITA1,RPH3A,SDS,SDSL,SLC8B1,TPCN1"
TCGA.AG.3611.01A	12	113266063	124322951	852	0.3513	NEUTRAL	NA	116	Too-Many
TCGA.AG.A01W.01A	12	113325931	115964061	70	0.1619	NEUTRAL	NA	19	"CCDC42B,DDX54,DTX1,IQCD,LHX5,OAS1,OAS2,OAS3,PLBD2,RASAL1,RBM19,RITA1,RPH3A,SDS,SDSL,SLC8B1,TBX3,TBX5,TPCN1"
TCGA.AG.3909.01A	12	113354287	113388470	10	0.1328	NEUTRAL	NA	2	"OAS1,OAS3"
TCGA.AA.A010.01A	12	113416375	113436019	5	0.3082	NEUTRAL	NA	1	OAS2
TCGA.AG.A00C.01A	12	113448132	113664506	37	0.182	NEUTRAL	NA	8	"CCDC42B,DDX54,DTX1,IQCD,OAS2,RASAL1,RITA1,TPCN1"
TCGA.CK.5914.01A	12	113448132	113731027	75	-0.3853	NEUTRAL	NA	8	"CCDC42B,DDX54,DTX1,IQCD,OAS2,RASAL1,RITA1,TPCN1"
TCGA.AA.A00N.01A	12	113495948	113664506	51	-0.4356	NEUTRAL	NA	7	"CCDC42B,DDX54,DTX1,IQCD,RASAL1,RITA1,TPCN1"
TCGA.AG.3909.01A	12	113531293	113731027	61	-0.3906	NEUTRAL	NA	7	"CCDC42B,DDX54,DTX1,IQCD,RASAL1,RITA1,TPCN1"
TCGA.AA.A00Q.01A	12	113544891	113729348	52	-0.2058	NEUTRAL	NA	6	"CCDC42B,DDX54,IQCD,RASAL1,RITA1,TPCN1"
TCGA.AA.A01Q.01A	12	113553432	113707529	32	-0.2085	NEUTRAL	NA	6	"CCDC42B,DDX54,IQCD,RASAL1,RITA1,TPCN1"
TCGA.AA.3861.01A	12	113554836	120222717	395	-0.0648	NEUTRAL	NA	36	"C12orf49,CCDC42B,CCDC60,CIT,DDX54,FBXO21,FBXW8,HRK,HSPB8,IQCD,KSR2,LHX5,MAP1LC3B2,MED13L,NOS1,PEBP1,PLBD2,PRKAB1,RASAL1,RBM19,RFC5,RITA1,RNFT2,SDS,SDSL,SLC8B1,SRRM4,SUDS3,TAOK3,TBX3,TBX5,TESC,TMEM233,TPCN1,VSIG10,WSB2"
TCGA.AA.3862.01A	12	113565850	120222717	393	-0.3524	NEUTRAL	NA	36	"C12orf49,CCDC42B,CCDC60,CIT,DDX54,FBXO21,FBXW8,HRK,HSPB8,IQCD,KSR2,LHX5,MAP1LC3B2,MED13L,NOS1,PEBP1,PLBD2,PRKAB1,RASAL1,RBM19,RFC5,RITA1,RNFT2,SDS,SDSL,SLC8B1,SRRM4,SUDS3,TAOK3,TBX3,TBX5,TESC,TMEM233,TPCN1,VSIG10,WSB2"
TCGA.CM.6677	12	113578202	117830478	1804	0.188	NEUTRAL	NA	22	"C12orf49,CCDC42B,DDX54,FBXO21,FBXW8,HRK,IQCD,LHX5,MAP1LC3B2,MED13L,NOS1,PLBD2,RBM19,RITA1,RNFT2,SDS,SDSL,SLC8B1,TBX3,TBX5,TESC,TPCN1"
TCGA.AG.A00C.01A	12	113698134	114823225	86	-0.1685	NEUTRAL	NA	8	"LHX5,PLBD2,RBM19,SDS,SDSL,SLC8B1,TBX5,TPCN1"
TCGA.AA.A02W.01A	12	113698134	133778682	1376	0.06	NEUTRAL	NA	151	Too-Many
TCGA.AA.A00N.01A	12	113710384	113742071	22	-0.3567	NEUTRAL	NA	2	"SLC8B1,TPCN1"
TCGA.AA.A00Q.01A	12	113729635	113905069	42	0.2096	NEUTRAL	NA	6	"LHX5,PLBD2,SDS,SDSL,SLC8B1,TPCN1"
TCGA.CK.5914.01A	12	113733717	113754302	8	0.3766	NEUTRAL	NA	2	"SLC8B1,TPCN1"
TCGA.AA.A01Q.01A	12	113733717	113796364	13	-0.1991	NEUTRAL	NA	2	"SLC8B1,TPCN1"
TCGA.CK.5914.01A	12	113754680	113837352	22	-0.0078	NEUTRAL	NA	3	"PLBD2,SDS,SLC8B1"
TCGA.AA.A01Q.01A	12	113806869	113875640	24	0.3166	NEUTRAL	NA	3	"PLBD2,SDS,SDSL"
TCGA.AA.A00D.01A	12	113865736	114793294	36	-0.3256	NEUTRAL	NA	4	"LHX5,RBM19,SDSL,TBX5"
TCGA.AA.A01Q.01A	12	113900958	114390270	22	-0.4124	NEUTRAL	NA	2	"LHX5,RBM19"
TCGA.CK.5914.01A	12	113905069	114823225	31	0.2048	NEUTRAL	NA	3	"LHX5,RBM19,TBX5"
TCGA.AA.3549	12	113960794	115069164	591	0.0388	NEUTRAL	NA	2	"RBM19,TBX5"
TCGA.DM.A1D7	12	113961740	133777644	7388	-0.0145	NEUTRAL	NA	145	Too-Many
TCGA.AG.4009.01A	12	114260980	114803865	26	0.1736	NEUTRAL	NA	2	"RBM19,TBX5"
TCGA.AA.A00L.01A	12	114260980	120159067	215	-0.0078	NEUTRAL	NA	25	"C12orf49,CCDC60,CIT,FBXO21,FBXW8,HRK,HSPB8,KSR2,MAP1LC3B2,MED13L,NOS1,PEBP1,PRKAB1,RBM19,RFC5,RNFT2,SRRM4,SUDS3,TAOK3,TBX3,TBX5,TESC,TMEM233,VSIG10,WSB2"
TCGA.AA.A00Q.01A	12	114282424	123351631	526	0.09	NEUTRAL	NA	81	"ACADS,ANAPC5,B3GNT4,BCL7A,C12orf43,C12orf49,CABP1,CAMKK2,CCDC60,CCDC62,CCDC64,CIT,CLIP1,COQ5,COX6A1,DENR,DIABLO,DYNLL1,FBXO21,FBXW8,GATC,GCN1L1,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,HRK,HSPB8,IL31,KDM2B,KNTC1,KSR2,LRRC43,MAP1LC3B2,MED13L,MLEC,MLXIP,MORN3,MSI1,NOS1,OASL,ORAI1,P2RX4,P2RX7,PEBP1,PLA2G1B,POP5,PRKAB1,PSMD9,PXN,RAB35,RBM19,RFC5,RHOF,RNF10,RNF34,RNFT2,RPLP0,RSRC2,SETD1B,SIRT4,SPPL3,SRRM4,SRSF9,SUDS3,TAOK3,TBX3,TBX5,TESC,TMEM120B,TMEM233,TRIAP1,UNC119B,VPS33A,VPS37B,VSIG10,WDR66,WSB2,ZCCHC8"
TCGA.AA.3660	12	114344062	118085127	1739	0.3312	NEUTRAL	NA	13	"C12orf49,FBXO21,FBXW8,HRK,KSR2,MAP1LC3B2,MED13L,NOS1,RBM19,RNFT2,TBX3,TBX5,TESC"
TCGA.AA.A01Q.01A	12	114392878	114803865	9	0.2917	NEUTRAL	NA	2	"RBM19,TBX5"
TCGA.AA.3982	12	114487581	115551933	515	0.0535	NEUTRAL	NA	2	"TBX3,TBX5"
TCGA.AA.3850	12	114536856	114575812	48	-0.45675	NEUTRAL	NA	0	None
TCGA.AA.3941	12	114537192	114575812	47	-0.3959	NEUTRAL	NA	0	None
TCGA.AA.3966	12	114569486	133777644	7057	0.0472	NEUTRAL	NA	144	Too-Many
TCGA.AA.3850	12	114576722	114779997	132	-0.04975	NEUTRAL	NA	0	None
TCGA.AA.3941	12	114576722	114967740	213	0.2899	NEUTRAL	NA	1	TBX5
TCGA.CM.6166	12	114616916	133777644	7018	0.3294	NEUTRAL	NA	144	Too-Many
TCGA.G5.6572	12	114616916	133777644	7000	-0.0354	NEUTRAL	NA	144	Too-Many
TCGA.EI.6510	12	114640717	133777644	6997	0.3179	NEUTRAL	NA	144	Too-Many
TCGA.AA.3850	12	114781012	114959584	78	0.20275	NEUTRAL	NA	1	TBX5
TCGA.AA.A00D.01A	12	114803865	116418504	24	0.0993	NEUTRAL	NA	3	"MED13L,TBX3,TBX5"
TCGA.AA.3850	12	114967740	115414844	172	0.30225	NEUTRAL	NA	1	TBX3
TCGA.AA.A010.01A	12	115114080	117273711	54	-0.2679	NEUTRAL	NA	5	"C12orf49,MAP1LC3B2,MED13L,RNFT2,TBX3"
TCGA.F4.6461	12	115154435	133777644	6754	-0.0274	NEUTRAL	NA	142	Too-Many
TCGA.AA.3941	12	115304295	115548898	106	0.2584	NEUTRAL	NA	0	None
TCGA.AA.3850	12	115418009	115546777	58	0.00545	NEUTRAL	NA	0	None
TCGA.AA.A02K.01A	12	115456805	116434779	18	-0.1567	NEUTRAL	NA	1	MED13L
TCGA.AA.3982	12	115558736	115697432	90	0.0963	NEUTRAL	NA	0	None
TCGA.AA.3941	12	115558736	115716843	98	0.271	NEUTRAL	NA	0	None
TCGA.AA.3850	12	115572902	115624208	22	0.20955	NEUTRAL	NA	0	None
TCGA.AA.3850	12	115629902	115716843	62	0.13415	NEUTRAL	NA	0	None
TCGA.AA.3850	12	115732991	116059682	204	0.18875	NEUTRAL	NA	0	None
TCGA.AA.3941	12	115732991	116162119	268	0.3144	NEUTRAL	NA	0	None
TCGA.AA.3844	12	115734721	116161118	266	0.3773	NEUTRAL	NA	0	None
TCGA.AA.3982	12	115734721	116161118	266	0.0427	NEUTRAL	NA	0	None
TCGA.CA.6716	12	115772031	133777644	6478	0.0195	NEUTRAL	NA	142	Too-Many
TCGA.AG.A01W.01A	12	115968697	118450757	149	-0.1815	NEUTRAL	NA	10	"C12orf49,FBXO21,FBXW8,HRK,KSR2,MAP1LC3B2,MED13L,NOS1,RNFT2,TESC"
TCGA.AA.3850	12	116070104	116155852	49	0.03165	NEUTRAL	NA	0	None
TCGA.SS.A7HO	12	116113904	133777644	6259	-0.3313	NEUTRAL	NA	142	Too-Many
TCGA.AA.3850	12	116160539	116228264	63	-0.44905	NEUTRAL	NA	0	None
TCGA.AA.3941	12	116167463	116252879	84	0.0515	NEUTRAL	NA	0	None
TCGA.AA.3982	12	116167463	116252879	85	-0.0802	NEUTRAL	NA	0	None
TCGA.AA.3844	12	116167463	116638444	216	0.3632	NEUTRAL	NA	1	MED13L
TCGA.AA.3811	12	116167463	119328786	1199	0.0871	NEUTRAL	NA	16	"C12orf49,FBXO21,FBXW8,HRK,KSR2,MAP1LC3B2,MED13L,NOS1,PEBP1,RFC5,RNFT2,SUDS3,TAOK3,TESC,VSIG10,WSB2"
TCGA.AA.3850	12	116228373	116252879	29	0.22095	NEUTRAL	NA	0	None
TCGA.AA.3982	12	116252944	119328786	1115	0.1659	NEUTRAL	NA	16	"C12orf49,FBXO21,FBXW8,HRK,KSR2,MAP1LC3B2,MED13L,NOS1,PEBP1,RFC5,RNFT2,SUDS3,TAOK3,TESC,VSIG10,WSB2"
TCGA.AA.3850	12	116281801	116539383	91	0.01965	NEUTRAL	NA	1	MED13L
TCGA.DM.A1DA	12	116314775	133777644	6090	-0.2014	NEUTRAL	NA	142	Too-Many
TCGA.AA.3549	12	116382645	124360116	2083	0.0715	NEUTRAL	NA	97	"ABCB9,ACADS,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,C12orf43,C12orf49,C12orf65,CABP1,CAMKK2,CCDC60,CCDC62,CCDC64,CDK2AP1,CIT,CLIP1,COQ5,COX6A1,DDX55,DENR,DIABLO,DNAH10,DYNLL1,EIF2B1,FBXO21,FBXW8,GATC,GCN1L1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,HRK,HSPB8,IL31,KDM2B,KNTC1,KSR2,LRRC43,MAP1LC3B2,MED13L,MLEC,MLXIP,MORN3,MPHOSPH9,MSI1,NOS1,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PEBP1,PITPNM2,PLA2G1B,POP5,PRKAB1,PSMD9,PXN,RAB35,RFC5,RHOF,RILPL1,RILPL2,RNF10,RNF34,RNFT2,RPLP0,RSRC2,SBNO1,SETD1B,SETD8,SIRT4,SNRNP35,SPPL3,SRRM4,SRSF9,SUDS3,TAOK3,TCTN2,TESC,TMED2,TMEM120B,TMEM233,TRIAP1,UNC119B,VPS33A,VPS37B,VSIG10,WDR66,WSB2,ZCCHC8"
TCGA.G4.6314	12	116387209	117207207	225	-0.308	NEUTRAL	NA	4	"C12orf49,MAP1LC3B2,MED13L,RNFT2"
TCGA.AG.A00C.01A	12	116399020	116675250	32	-0.28	NEUTRAL	NA	1	MED13L
TCGA.AA.A00F.01A	12	116399020	116714824	33	-0.2613	NEUTRAL	NA	1	MED13L
TCGA.AA.A01Q.01A	12	116399020	117160834	39	0.2051	NEUTRAL	NA	3	"C12orf49,MAP1LC3B2,MED13L"
TCGA.AG.3891.01A	12	116399020	117615278	72	-0.1432	NEUTRAL	NA	8	"C12orf49,FBXO21,FBXW8,HRK,MAP1LC3B2,MED13L,RNFT2,TESC"
TCGA.AG.4009.01A	12	116399020	117627000	73	-0.1864	NEUTRAL	NA	8	"C12orf49,FBXO21,FBXW8,HRK,MAP1LC3B2,MED13L,RNFT2,TESC"
TCGA.AA.A00D.01A	12	116420141	116714824	24	-0.3334	NEUTRAL	NA	1	MED13L
TCGA.AA.A02K.01A	12	116440758	118828885	161	0.1046	NEUTRAL	NA	16	"C12orf49,FBXO21,FBXW8,HRK,KSR2,MAP1LC3B2,MED13L,NOS1,PEBP1,RFC5,RNFT2,SUDS3,TAOK3,TESC,VSIG10,WSB2"
TCGA.CM.6675	12	116529834	133777644	6018	-0.0093	NEUTRAL	NA	142	Too-Many
TCGA.AF.3913	12	116536920	133777644	6001	-0.0572	NEUTRAL	NA	142	Too-Many
TCGA.CK.5914.01A	12	116549179	117513034	37	0.0167	NEUTRAL	NA	7	"C12orf49,FBXW8,HRK,MAP1LC3B2,MED13L,RNFT2,TESC"
TCGA.AA.3850	12	116603725	126671029	3005	0.30785	NEUTRAL	NA	108	Too-Many
TCGA.AG.3909.01A	12	116675250	117627000	44	-0.1661	NEUTRAL	NA	8	"C12orf49,FBXO21,FBXW8,HRK,MAP1LC3B2,MED13L,RNFT2,TESC"
TCGA.AA.A00N.01A	12	116714824	117655800	49	-0.1942	NEUTRAL	NA	9	"C12orf49,FBXO21,FBXW8,HRK,MAP1LC3B2,MED13L,NOS1,RNFT2,TESC"
TCGA.AG.A00C.01A	12	116972385	117627000	40	0.1037	NEUTRAL	NA	7	"C12orf49,FBXO21,FBXW8,HRK,MAP1LC3B2,RNFT2,TESC"
TCGA.AA.A00D.01A	12	116972385	118588770	68	0.1026	NEUTRAL	NA	14	"C12orf49,FBXO21,FBXW8,HRK,KSR2,MAP1LC3B2,NOS1,PEBP1,RFC5,RNFT2,TAOK3,TESC,VSIG10,WSB2"
TCGA.AA.A00F.01A	12	116972385	133778682	977	0.1192	NEUTRAL	NA	141	Too-Many
TCGA.AA.A01Q.01A	12	117175578	117627000	35	-0.2236	NEUTRAL	NA	6	"C12orf49,FBXO21,FBXW8,HRK,RNFT2,TESC"
TCGA.G4.6314	12	117209664	133777644	5828	-0.001	NEUTRAL	NA	139	Too-Many
TCGA.AG.3891.01A	12	117628014	118298068	49	-0.0033	NEUTRAL	NA	3	"FBXO21,KSR2,NOS1"
TCGA.AG.A00C.01A	12	117653021	118298068	48	-0.3368	NEUTRAL	NA	2	"KSR2,NOS1"
TCGA.AG.4009.01A	12	117653021	118474106	62	0.2077	NEUTRAL	NA	4	"KSR2,NOS1,RFC5,WSB2"
TCGA.AG.3906.01A	12	117655800	117969395	38	0.0666	NEUTRAL	NA	2	"KSR2,NOS1"
TCGA.CM.6677	12	117834742	118720268	371	-0.3379	NEUTRAL	NA	6	"KSR2,PEBP1,RFC5,TAOK3,VSIG10,WSB2"
TCGA.AA.3844	12	117941623	117945844	5	-0.3967	NEUTRAL	NA	1	KSR2
TCGA.AG.3906.01A	12	117977497	118105252	6	-0.4539	NEUTRAL	NA	1	KSR2
TCGA.CK.5914.01A	12	118016866	118650663	48	-0.0525	NEUTRAL	NA	6	"KSR2,PEBP1,RFC5,TAOK3,VSIG10,WSB2"
TCGA.AA.3660	12	118085525	119606757	544	-0.0337	NEUTRAL	NA	8	"KSR2,PEBP1,RFC5,SRRM4,SUDS3,TAOK3,VSIG10,WSB2"
TCGA.AG.3906.01A	12	118198815	118468936	14	0.1437	NEUTRAL	NA	2	"KSR2,RFC5"
TCGA.AG.3891.01A	12	118405851	118490076	18	0.3441	NEUTRAL	NA	3	"KSR2,RFC5,WSB2"
TCGA.AG.A00C.01A	12	118405851	118599546	33	0.2298	NEUTRAL	NA	6	"KSR2,PEBP1,RFC5,TAOK3,VSIG10,WSB2"
TCGA.AA.A01Q.01A	12	118456808	118480608	15	-0.2259	NEUTRAL	NA	2	"RFC5,WSB2"
TCGA.AG.3909.01A	12	118468936	118651778	31	0.2227	NEUTRAL	NA	5	"PEBP1,RFC5,TAOK3,VSIG10,WSB2"
TCGA.AA.A00N.01A	12	118468936	118671448	34	0.0525	NEUTRAL	NA	5	"PEBP1,RFC5,TAOK3,VSIG10,WSB2"
TCGA.AG.4009.01A	12	118476042	118519882	11	-0.5025	NEUTRAL	NA	2	"VSIG10,WSB2"
TCGA.AA.A01Q.01A	12	118480927	120616379	111	0.2743	NEUTRAL	NA	14	"CCDC60,CCDC64,CIT,GCN1L1,HSPB8,PEBP1,PRKAB1,RAB35,SRRM4,SUDS3,TAOK3,TMEM233,VSIG10,WSB2"
TCGA.AG.3891.01A	12	118511462	122181486	378	0.1747	NEUTRAL	NA	43	"ACADS,ANAPC5,C12orf43,CABP1,CAMKK2,CCDC60,CCDC64,CIT,COQ5,COX6A1,DYNLL1,GATC,GCN1L1,HNF1A,HSPB8,KDM2B,MLEC,MORN3,MSI1,OASL,ORAI1,P2RX4,P2RX7,PEBP1,PLA2G1B,POP5,PRKAB1,PXN,RAB35,RNF10,RNF34,RPLP0,SIRT4,SPPL3,SRRM4,SRSF9,SUDS3,TAOK3,TMEM120B,TMEM233,TRIAP1,UNC119B,VSIG10"
TCGA.AG.4009.01A	12	118533301	118651778	16	-0.001	NEUTRAL	NA	3	"PEBP1,TAOK3,VSIG10"
TCGA.AG.3906.01A	12	118533301	118671448	17	-0.0979	NEUTRAL	NA	3	"PEBP1,TAOK3,VSIG10"
TCGA.AG.A01W.01A	12	118606740	118694920	29	-0.218	NEUTRAL	NA	1	TAOK3
TCGA.AG.A00C.01A	12	118610210	118639054	6	-0.3604	NEUTRAL	NA	1	TAOK3
TCGA.AG.A00C.01A	12	118650663	118693201	9	0.1813	NEUTRAL	NA	1	TAOK3
TCGA.AA.A00D.01A	12	118650663	120159067	50	0.08	NEUTRAL	NA	8	"CCDC60,CIT,HSPB8,PRKAB1,SRRM4,SUDS3,TAOK3,TMEM233"
TCGA.AG.3909.01A	12	118671448	118828884	12	-0.4255	NEUTRAL	NA	2	"SUDS3,TAOK3"
TCGA.AG.A01W.01A	12	118725345	119077102	47	-0.0748	NEUTRAL	NA	2	"SUDS3,TAOK3"
TCGA.CM.6677	12	118725732	133777644	5222	0.0173	NEUTRAL	NA	128	Too-Many
TCGA.D5.6924	12	118791290	133777644	5228	0.0502	NEUTRAL	NA	128	Too-Many
TCGA.AA.A010.01A	12	118817902	118852099	10	-0.052	NEUTRAL	NA	1	SUDS3
TCGA.AG.3906.01A	12	118817902	124393760	795	0.1643	NEUTRAL	NA	82	"ABCB9,ACADS,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,C12orf43,C12orf65,CABP1,CAMKK2,CCDC60,CCDC62,CCDC64,CDK2AP1,CIT,CLIP1,COQ5,COX6A1,DDX55,DENR,DIABLO,DNAH10,DYNLL1,EIF2B1,GATC,GCN1L1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,HSPB8,IL31,KDM2B,KNTC1,LRRC43,MLEC,MLXIP,MORN3,MPHOSPH9,MSI1,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PLA2G1B,POP5,PRKAB1,PSMD9,PXN,RAB35,RHOF,RILPL1,RILPL2,RNF10,RNF34,RPLP0,RSRC2,SBNO1,SETD1B,SETD8,SIRT4,SNRNP35,SPPL3,SRRM4,SRSF9,SUDS3,TCTN2,TMED2,TMEM120B,TMEM233,TRIAP1,UNC119B,VPS33A,VPS37B,WDR66,ZCCHC8"
TCGA.CK.5914.01A	12	118827640	120794668	179	0.0041	NEUTRAL	NA	15	"CCDC60,CCDC64,CIT,GCN1L1,HSPB8,MSI1,PLA2G1B,PRKAB1,PXN,RAB35,RPLP0,SIRT4,SRRM4,SUDS3,TMEM233"
TCGA.AG.A00C.01A	12	118838422	118848867	4	0.0869	NEUTRAL	NA	1	SUDS3
TCGA.AG.4009.01A	12	118838422	120613886	139	0.1267	NEUTRAL	NA	10	"CCDC60,CCDC64,CIT,GCN1L1,HSPB8,PRKAB1,RAB35,SRRM4,SUDS3,TMEM233"
TCGA.AA.A02K.01A	12	118838423	119419642	6	-0.3601	NEUTRAL	NA	2	"SRRM4,SUDS3"
TCGA.AG.A00C.01A	12	118852099	119583149	9	-0.3804	NEUTRAL	NA	2	"SRRM4,SUDS3"
TCGA.AA.3941	12	118889286	119328786	176	0.183	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	119078597	119086485	9	0.2666	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	119090340	119096207	4	-0.2456	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	119105709	119146347	16	-0.0797	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	12	119249827	119642057	60	-0.1831	NEUTRAL	NA	2	"HSPB8,SRRM4"
TCGA.AA.3844	12	119322540	119369343	18	-0.3095	NEUTRAL	NA	0	None
TCGA.AA.3941	12	119333413	120062824	290	0.3523	NEUTRAL	NA	4	"CCDC60,HSPB8,SRRM4,TMEM233"
TCGA.AA.3811	12	119335123	120062824	287	0.0197	NEUTRAL	NA	4	"CCDC60,HSPB8,SRRM4,TMEM233"
TCGA.AA.3982	12	119335123	125712080	1537	0.3019	NEUTRAL	NA	91	"AACS,ABCB9,ACADS,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,BRI3BP,C12orf43,C12orf65,CABP1,CAMKK2,CCDC60,CCDC62,CCDC64,CCDC92,CDK2AP1,CIT,CLIP1,COQ5,COX6A1,DDX55,DENR,DHX37,DIABLO,DNAH10,DYNLL1,EIF2B1,FAM101A,GATC,GCN1L1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,HSPB8,IL31,KDM2B,KNTC1,LRRC43,MLEC,MLXIP,MORN3,MPHOSPH9,MSI1,NCOR2,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PLA2G1B,POP5,PRKAB1,PSMD9,PXN,RAB35,RHOF,RILPL1,RILPL2,RNF10,RNF34,RPLP0,RSRC2,SBNO1,SCARB1,SETD1B,SETD8,SIRT4,SNRNP35,SPPL3,SRRM4,SRSF9,TCTN2,TMED2,TMEM120B,TMEM233,TRIAP1,UBC,UNC119B,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AA.A02K.01A	12	119539990	122231005	367	0.0547	NEUTRAL	NA	40	"ACADS,ANAPC5,C12orf43,CABP1,CAMKK2,CCDC60,CCDC64,CIT,COQ5,COX6A1,DYNLL1,GATC,GCN1L1,HNF1A,HSPB8,KDM2B,MLEC,MORN3,MSI1,OASL,ORAI1,P2RX4,P2RX7,PLA2G1B,POP5,PRKAB1,PXN,RAB35,RHOF,RNF10,RNF34,RPLP0,SIRT4,SPPL3,SRRM4,SRSF9,TMEM120B,TMEM233,TRIAP1,UNC119B"
TCGA.AG.3909.01A	12	119588785	119631456	7	-0.4142	NEUTRAL	NA	2	"HSPB8,SRRM4"
TCGA.AG.A00C.01A	12	119588785	119866429	9	0.112	NEUTRAL	NA	3	"CCDC60,HSPB8,SRRM4"
TCGA.AA.3660	12	119610484	126750529	1940	0.3318	NEUTRAL	NA	91	"AACS,ABCB9,ACADS,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,BRI3BP,C12orf43,C12orf65,CABP1,CAMKK2,CCDC60,CCDC62,CCDC64,CCDC92,CDK2AP1,CIT,CLIP1,COQ5,COX6A1,DDX55,DENR,DHX37,DIABLO,DNAH10,DYNLL1,EIF2B1,FAM101A,GATC,GCN1L1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,HSPB8,IL31,KDM2B,KNTC1,LRRC43,MLEC,MLXIP,MORN3,MPHOSPH9,MSI1,NCOR2,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PLA2G1B,POP5,PRKAB1,PSMD9,PXN,RAB35,RHOF,RILPL1,RILPL2,RNF10,RNF34,RPLP0,RSRC2,SBNO1,SCARB1,SETD1B,SETD8,SIRT4,SNRNP35,SPPL3,SRSF9,TCTN2,TMED2,TMEM120B,TMEM132B,TMEM233,TRIAP1,UBC,UNC119B,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AG.A01W.01A	12	119661298	120362007	94	-0.2609	NEUTRAL	NA	4	"CCDC60,CIT,PRKAB1,TMEM233"
TCGA.AG.A00C.01A	12	119909772	119978379	12	-0.239	NEUTRAL	NA	1	CCDC60
TCGA.AA.3811	12	120077615	126019725	1386	0.3212	NEUTRAL	NA	89	"AACS,ABCB9,ACADS,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,BRI3BP,C12orf43,C12orf65,CABP1,CAMKK2,CCDC62,CCDC64,CCDC92,CDK2AP1,CIT,CLIP1,COQ5,COX6A1,DDX55,DENR,DHX37,DIABLO,DNAH10,DYNLL1,EIF2B1,FAM101A,GATC,GCN1L1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,IL31,KDM2B,KNTC1,LRRC43,MLEC,MLXIP,MORN3,MPHOSPH9,MSI1,NCOR2,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PLA2G1B,POP5,PRKAB1,PSMD9,PXN,RAB35,RHOF,RILPL1,RILPL2,RNF10,RNF34,RPLP0,RSRC2,SBNO1,SCARB1,SETD1B,SETD8,SIRT4,SNRNP35,SPPL3,SRSF9,TCTN2,TMED2,TMEM120B,TMEM132B,TMEM233,TRIAP1,UBC,UNC119B,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AG.A00C.01A	12	120106013	120151975	21	0.1868	NEUTRAL	NA	2	"CIT,PRKAB1"
TCGA.AG.A015.01A	12	120150962	120210566	19	0.1633	NEUTRAL	NA	1	CIT
TCGA.AA.A00A.01A	12	120156010	120220271	19	-0.2954	NEUTRAL	NA	1	CIT
TCGA.AG.A00C.01A	12	120156010	120530767	39	-0.1483	NEUTRAL	NA	2	"CCDC64,CIT"
TCGA.AA.A00L.01A	12	120166275	120221661	16	-0.3153	NEUTRAL	NA	1	CIT
TCGA.AA.A00A.01A	12	120221661	133277784	779	0.1	NEUTRAL	NA	110	Too-Many
TCGA.AA.A00D.01A	12	120222717	122763292	229	0.1351	NEUTRAL	NA	47	"ACADS,ANAPC5,B3GNT4,BCL7A,C12orf43,CABP1,CAMKK2,CCDC64,CIT,CLIP1,COQ5,COX6A1,DIABLO,DYNLL1,GATC,GCN1L1,HNF1A,HPD,IL31,KDM2B,LRRC43,MLEC,MLXIP,MORN3,MSI1,OASL,ORAI1,P2RX4,P2RX7,PLA2G1B,POP5,PSMD9,PXN,RAB35,RHOF,RNF10,RNF34,RPLP0,SETD1B,SIRT4,SPPL3,SRSF9,TMEM120B,TRIAP1,UNC119B,VPS33A,WDR66"
TCGA.AA.A00L.01A	12	120222717	122821152	259	0.1446	NEUTRAL	NA	47	"ACADS,ANAPC5,B3GNT4,BCL7A,C12orf43,CABP1,CAMKK2,CCDC64,CIT,CLIP1,COQ5,COX6A1,DIABLO,DYNLL1,GATC,GCN1L1,HNF1A,HPD,IL31,KDM2B,LRRC43,MLEC,MLXIP,MORN3,MSI1,OASL,ORAI1,P2RX4,P2RX7,PLA2G1B,POP5,PSMD9,PXN,RAB35,RHOF,RNF10,RNF34,RPLP0,SETD1B,SIRT4,SPPL3,SRSF9,TMEM120B,TRIAP1,UNC119B,VPS33A,WDR66"
TCGA.AA.A00N.01A	12	120240961	120569682	27	0.0761	NEUTRAL	NA	4	"CCDC64,CIT,GCN1L1,RAB35"
TCGA.AG.A015.01A	12	120240961	120607923	57	0.2757	NEUTRAL	NA	4	"CCDC64,CIT,GCN1L1,RAB35"
TCGA.AA.3862.01A	12	120240961	121438821	172	0.2762	NEUTRAL	NA	23	"ACADS,CABP1,CCDC64,CIT,COQ5,COX6A1,DYNLL1,GATC,GCN1L1,HNF1A,MLEC,MSI1,PLA2G1B,POP5,PXN,RAB35,RNF10,RPLP0,SIRT4,SPPL3,SRSF9,TRIAP1,UNC119B"
TCGA.AG.A01W.01A	12	120375288	120761981	52	-0.1325	NEUTRAL	NA	7	"CCDC64,GCN1L1,PLA2G1B,PXN,RAB35,RPLP0,SIRT4"
TCGA.AZ.6607	12	120475423	133777644	4630	0.103	NEUTRAL	NA	120	Too-Many
TCGA.AG.3909.01A	12	120518644	120536578	5	-0.4784	NEUTRAL	NA	2	"CCDC64,RAB35"
TCGA.EI.6883	12	120546926	125354102	1036	0.025	NEUTRAL	NA	80	"ABCB9,ACADS,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,C12orf43,C12orf65,CABP1,CAMKK2,CCDC62,CCDC92,CDK2AP1,CLIP1,COQ5,COX6A1,DDX55,DENR,DIABLO,DNAH10,DYNLL1,EIF2B1,FAM101A,GATC,GCN1L1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,IL31,KDM2B,KNTC1,LRRC43,MLEC,MLXIP,MORN3,MPHOSPH9,MSI1,NCOR2,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PLA2G1B,POP5,PSMD9,PXN,RAB35,RHOF,RILPL1,RILPL2,RNF10,RNF34,RPLP0,RSRC2,SBNO1,SCARB1,SETD1B,SETD8,SIRT4,SNRNP35,SPPL3,SRSF9,TCTN2,TMED2,TMEM120B,TRIAP1,UNC119B,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AG.A00C.01A	12	120565612	120621331	45	-0.2568	NEUTRAL	NA	1	GCN1L1
TCGA.A6.3808.01A	12	120568957	123046396	436	-0.1236	NEUTRAL	NA	47	"ACADS,ANAPC5,B3GNT4,BCL7A,C12orf43,CABP1,CAMKK2,CLIP1,COQ5,COX6A1,DIABLO,DYNLL1,GATC,GCN1L1,HNF1A,HPD,IL31,KDM2B,KNTC1,LRRC43,MLEC,MLXIP,MORN3,MSI1,OASL,ORAI1,P2RX4,P2RX7,PLA2G1B,POP5,PSMD9,PXN,RHOF,RNF10,RNF34,RPLP0,RSRC2,SETD1B,SIRT4,SPPL3,SRSF9,TMEM120B,TRIAP1,UNC119B,VPS33A,WDR66,ZCCHC8"
TCGA.AA.A010.01A	12	120582088	120783907	58	0.1442	NEUTRAL	NA	6	"GCN1L1,MSI1,PLA2G1B,PXN,RPLP0,SIRT4"
TCGA.AA.A01C.01A	12	120591501	133778682	1053	-0.2753	NEUTRAL	NA	118	Too-Many
TCGA.AA.A01K.01A	12	120597612	133778682	974	-0.2875	NEUTRAL	NA	118	Too-Many
TCGA.AA.A00O.01A	12	120600600	133778682	962	-0.2658	NEUTRAL	NA	118	Too-Many
TCGA.AG.A015.01A	12	120611407	120622588	10	-0.2741	NEUTRAL	NA	1	GCN1L1
TCGA.AG.4009.01A	12	120615198	120622588	5	-0.324	NEUTRAL	NA	1	GCN1L1
TCGA.AG.A00C.01A	12	120621863	121176873	85	0.3035	NEUTRAL	NA	18	"ACADS,CABP1,COQ5,COX6A1,DYNLL1,GATC,GCN1L1,MLEC,MSI1,PLA2G1B,POP5,PXN,RNF10,RPLP0,SIRT4,SRSF9,TRIAP1,UNC119B"
TCGA.AG.3909.01A	12	120628063	121125059	73	-0.2324	NEUTRAL	NA	16	"CABP1,COQ5,COX6A1,DYNLL1,GATC,GCN1L1,MLEC,MSI1,PLA2G1B,POP5,PXN,RNF10,RPLP0,SIRT4,SRSF9,TRIAP1"
TCGA.AG.A015.01A	12	120628063	122107203	188	0.2292	NEUTRAL	NA	30	"ACADS,ANAPC5,C12orf43,CABP1,CAMKK2,COQ5,COX6A1,DYNLL1,GATC,GCN1L1,HNF1A,KDM2B,MLEC,MORN3,MSI1,OASL,ORAI1,P2RX4,P2RX7,PLA2G1B,POP5,PXN,RNF10,RNF34,RPLP0,SIRT4,SPPL3,SRSF9,TRIAP1,UNC119B"
TCGA.AA.A01Q.01A	12	120634581	121125059	69	-0.1264	NEUTRAL	NA	15	"CABP1,COQ5,COX6A1,DYNLL1,GATC,MLEC,MSI1,PLA2G1B,POP5,PXN,RNF10,RPLP0,SIRT4,SRSF9,TRIAP1"
TCGA.AG.4009.01A	12	120638473	120785192	17	0.0326	NEUTRAL	NA	5	"MSI1,PLA2G1B,PXN,RPLP0,SIRT4"
TCGA.AG.A01W.01A	12	120811095	121001125	33	-0.3498	NEUTRAL	NA	7	"COQ5,COX6A1,DYNLL1,GATC,RNF10,SRSF9,TRIAP1"
TCGA.AG.4009.01A	12	120875883	121098834	40	-0.0963	NEUTRAL	NA	9	"CABP1,COQ5,COX6A1,DYNLL1,GATC,POP5,RNF10,SRSF9,TRIAP1"
TCGA.AA.A010.01A	12	120907198	121018920	26	0.3302	NEUTRAL	NA	5	"COQ5,DYNLL1,POP5,RNF10,SRSF9"
TCGA.AA.A01Q.01A	12	121163625	121176298	7	-0.1949	NEUTRAL	NA	1	ACADS
TCGA.AG.3909.01A	12	121174741	121176873	7	-0.1714	NEUTRAL	NA	1	ACADS
TCGA.AG.4009.01A	12	121175131	122658354	188	0.0223	NEUTRAL	NA	23	"ACADS,ANAPC5,BCL7A,C12orf43,CAMKK2,HNF1A,HPD,IL31,KDM2B,LRRC43,MLXIP,MORN3,OASL,ORAI1,P2RX4,P2RX7,PSMD9,RHOF,RNF34,SETD1B,SPPL3,TMEM120B,WDR66"
TCGA.CK.5914.01A	12	121175588	121176873	5	-0.1854	NEUTRAL	NA	1	ACADS
TCGA.AA.A01Q.01A	12	121176634	122692881	145	0.0681	NEUTRAL	NA	25	"ACADS,ANAPC5,B3GNT4,BCL7A,C12orf43,CAMKK2,DIABLO,HNF1A,HPD,IL31,KDM2B,LRRC43,MLXIP,MORN3,OASL,ORAI1,P2RX4,P2RX7,PSMD9,RHOF,RNF34,SETD1B,SPPL3,TMEM120B,WDR66"
TCGA.AG.A01W.01A	12	121177725	121286240	37	0.0347	NEUTRAL	NA	2	"ACADS,SPPL3"
TCGA.AG.4015	12	121181061	125054768	775	-0.1677	NEUTRAL	NA	60	"ABCB9,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,C12orf43,C12orf65,CAMKK2,CCDC62,CCDC92,CDK2AP1,CLIP1,DDX55,DENR,DIABLO,DNAH10,EIF2B1,FAM101A,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HNF1A,HPD,IL31,KDM2B,KNTC1,LRRC43,MLXIP,MORN3,MPHOSPH9,NCOR2,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PSMD9,RHOF,RILPL1,RILPL2,RNF34,RSRC2,SBNO1,SETD1B,SETD8,SNRNP35,SPPL3,TCTN2,TMED2,TMEM120B,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AA.A010.01A	12	121202737	121248563	10	0.1	NEUTRAL	NA	1	SPPL3
TCGA.AA.A00N.01A	12	121202737	121465359	26	0.3263	NEUTRAL	NA	4	"C12orf43,HNF1A,OASL,SPPL3"
TCGA.AG.A00C.01A	12	121202737	121686372	49	-0.1289	NEUTRAL	NA	7	"C12orf43,CAMKK2,HNF1A,OASL,P2RX4,P2RX7,SPPL3"
TCGA.CK.5914.01A	12	121248563	121465359	17	-0.2471	NEUTRAL	NA	4	"C12orf43,HNF1A,OASL,SPPL3"
TCGA.AA.3861.01A	12	121441914	124798701	614	-0.0035	NEUTRAL	NA	57	"ABCB9,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,C12orf43,C12orf65,CAMKK2,CCDC62,CCDC92,CDK2AP1,CLIP1,DDX55,DENR,DIABLO,DNAH10,EIF2B1,FAM101A,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KDM2B,KNTC1,LRRC43,MLXIP,MORN3,MPHOSPH9,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PSMD9,RHOF,RILPL1,RILPL2,RNF34,RSRC2,SBNO1,SETD1B,SETD8,SNRNP35,TCTN2,TMED2,TMEM120B,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AA.3862.01A	12	121441914	124798701	620	-0.1957	NEUTRAL	NA	57	"ABCB9,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,C12orf43,C12orf65,CAMKK2,CCDC62,CCDC92,CDK2AP1,CLIP1,DDX55,DENR,DIABLO,DNAH10,EIF2B1,FAM101A,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KDM2B,KNTC1,LRRC43,MLXIP,MORN3,MPHOSPH9,OASL,OGFOD2,ORAI1,P2RX4,P2RX7,PITPNM2,PSMD9,RHOF,RILPL1,RILPL2,RNF34,RSRC2,SBNO1,SETD1B,SETD8,SNRNP35,TCTN2,TMED2,TMEM120B,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AY.A71X	12	121464970	133777644	4416	-0.0704	NEUTRAL	NA	97	"AACS,ABCB9,ADGRD1,ANAPC5,ANKLE2,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,BRI3BP,C12orf65,CAMKK2,CCDC62,CCDC92,CDK2AP1,CHFR,CLIP1,DDX51,DDX55,DENR,DHX37,DIABLO,DNAH10,EIF2B1,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KDM2B,KNTC1,LRCOL1,LRRC43,MLXIP,MMP17,MORN3,MPHOSPH9,NCOR2,NOC4L,OASL,OGFOD2,ORAI1,P2RX2,P2RX4,P2RX7,PGAM5,PITPNM2,PIWIL1,POLE,PSMD9,PUS1,PXMP2,RAN,RHOF,RILPL1,RILPL2,RIMBP2,RNF34,RSRC2,SBNO1,SCARB1,SETD1B,SETD8,SFSWAP,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM120B,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF664,ZNF664-FAM101A,ZNF84,ZNF891"
TCGA.AG.A01W.01A	12	121621327	121665481	30	0.2757	NEUTRAL	NA	2	"P2RX4,P2RX7"
TCGA.AA.A010.01A	12	121654885	121666300	4	-0.3746	NEUTRAL	NA	1	P2RX4
TCGA.AG.3909.01A	12	121654885	122284717	92	-0.2285	NEUTRAL	NA	11	"ANAPC5,CAMKK2,HPD,KDM2B,MORN3,ORAI1,P2RX4,RHOF,RNF34,SETD1B,TMEM120B"
TCGA.CK.5914.01A	12	121654885	122413129	138	-0.2436	NEUTRAL	NA	13	"ANAPC5,CAMKK2,HPD,KDM2B,MORN3,ORAI1,P2RX4,PSMD9,RHOF,RNF34,SETD1B,TMEM120B,WDR66"
TCGA.AA.A00N.01A	12	121654885	122685365	174	-0.3032	NEUTRAL	NA	17	"ANAPC5,BCL7A,CAMKK2,HPD,IL31,KDM2B,LRRC43,MLXIP,MORN3,ORAI1,P2RX4,PSMD9,RHOF,RNF34,SETD1B,TMEM120B,WDR66"
TCGA.AG.A01W.01A	12	121665952	121876845	29	-0.2717	NEUTRAL	NA	5	"ANAPC5,CAMKK2,KDM2B,P2RX4,RNF34"
TCGA.AG.A00C.01A	12	121687546	124288216	477	0.1773	NEUTRAL	NA	49	"ABCB9,ANAPC5,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,C12orf65,CAMKK2,CCDC62,CDK2AP1,CLIP1,DDX55,DENR,DIABLO,DNAH10,EIF2B1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KDM2B,KNTC1,LRRC43,MLXIP,MORN3,MPHOSPH9,OGFOD2,ORAI1,PITPNM2,PSMD9,RHOF,RILPL1,RILPL2,RNF34,RSRC2,SBNO1,SETD1B,SETD8,SNRNP35,TCTN2,TMED2,TMEM120B,VPS33A,VPS37B,WDR66,ZCCHC8"
TCGA.AA.A010.01A	12	121764861	122199502	55	-0.1363	NEUTRAL	NA	6	"ANAPC5,KDM2B,MORN3,ORAI1,RNF34,TMEM120B"
TCGA.AG.A01W.01A	12	121917565	122032025	21	-0.0461	NEUTRAL	NA	1	KDM2B
TCGA.AG.A01W.01A	12	122051216	122217119	16	-0.0488	NEUTRAL	NA	4	"MORN3,ORAI1,RHOF,TMEM120B"
TCGA.AG.A015.01A	12	122181486	122199502	5	-0.5145	NEUTRAL	NA	1	TMEM120B
TCGA.AG.3891.01A	12	122199502	123307843	218	0.3133	NEUTRAL	NA	22	"B3GNT4,BCL7A,CCDC62,CLIP1,DENR,DIABLO,HCAR1,HCAR2,HCAR3,HPD,IL31,KNTC1,LRRC43,MLXIP,PSMD9,RHOF,RSRC2,SETD1B,TMEM120B,VPS33A,WDR66,ZCCHC8"
TCGA.AG.A015.01A	12	122208744	133778682	817	0.2954	NEUTRAL	NA	88	"AACS,ABCB9,ADGRD1,ANKLE2,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,BRI3BP,C12orf65,CCDC62,CCDC92,CDK2AP1,CHFR,CLIP1,DDX51,DDX55,DENR,DHX37,DIABLO,DNAH10,EIF2B1,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KNTC1,LRCOL1,LRRC43,MLXIP,MMP17,MPHOSPH9,NCOR2,NOC4L,OGFOD2,P2RX2,PGAM5,PITPNM2,PIWIL1,POLE,PSMD9,PUS1,PXMP2,RAN,RHOF,RILPL1,RILPL2,RIMBP2,RSRC2,SBNO1,SCARB1,SETD1B,SETD8,SFSWAP,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM120B,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF664,ZNF664-FAM101A,ZNF84,ZNF891"
TCGA.AA.A02K.01A	12	122243716	123332995	232	0.1044	NEUTRAL	NA	21	"B3GNT4,BCL7A,CCDC62,CLIP1,DENR,DIABLO,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KNTC1,LRRC43,MLXIP,PSMD9,RSRC2,SETD1B,VPS33A,WDR66,ZCCHC8"
TCGA.AG.A00H.01A	12	122295207	123067222	148	-0.3321	NEUTRAL	NA	14	"B3GNT4,BCL7A,CLIP1,DIABLO,HPD,IL31,KNTC1,LRRC43,MLXIP,PSMD9,RSRC2,VPS33A,WDR66,ZCCHC8"
TCGA.AG.A01L.01A	12	122295608	132546654	697	0.1205	NEUTRAL	NA	66	"AACS,ABCB9,ADGRD1,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,BRI3BP,C12orf65,CCDC62,CCDC92,CDK2AP1,CLIP1,DDX55,DENR,DHX37,DIABLO,DNAH10,EIF2B1,EP400,FAM101A,FZD10,GLT1D1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KNTC1,LRRC43,MLXIP,MMP17,MPHOSPH9,NCOR2,OGFOD2,PITPNM2,PIWIL1,PSMD9,PUS1,RAN,RILPL1,RILPL2,RIMBP2,RSRC2,SBNO1,SCARB1,SETD8,SFSWAP,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AG.A01W.01A	12	122304127	122400761	30	-0.3181	NEUTRAL	NA	3	"HPD,PSMD9,WDR66"
TCGA.AG.3909.01A	12	122413129	122658354	26	-0.2029	NEUTRAL	NA	5	"BCL7A,IL31,LRRC43,MLXIP,WDR66"
TCGA.AG.A01W.01A	12	122466311	122802732	79	-0.1995	NEUTRAL	NA	8	"B3GNT4,BCL7A,CLIP1,DIABLO,IL31,LRRC43,MLXIP,VPS33A"
TCGA.AA.A010.01A	12	122710437	122729089	8	-0.5008	NEUTRAL	NA	2	"DIABLO,VPS33A"
TCGA.AG.3909.01A	12	122717347	123006653	58	0.0619	NEUTRAL	NA	4	"CLIP1,RSRC2,VPS33A,ZCCHC8"
TCGA.AA.A01Q.01A	12	122717347	123259148	52	0.1783	NEUTRAL	NA	10	"CCDC62,CLIP1,DENR,HCAR1,HCAR2,HCAR3,KNTC1,RSRC2,VPS33A,ZCCHC8"
TCGA.AG.4009.01A	12	122723112	122825280	25	-0.0985	NEUTRAL	NA	2	"CLIP1,VPS33A"
TCGA.AA.3509.01A	12	122723112	122964687	37	-0.4711	NEUTRAL	NA	3	"CLIP1,VPS33A,ZCCHC8"
TCGA.AA.A00N.01A	12	122729089	122821152	21	0.065	NEUTRAL	NA	2	"CLIP1,VPS33A"
TCGA.CK.5914.01A	12	122750807	122967122	31	-0.2067	NEUTRAL	NA	3	"CLIP1,VPS33A,ZCCHC8"
TCGA.AA.A010.01A	12	122817497	123058809	58	0.0931	NEUTRAL	NA	4	"CLIP1,KNTC1,RSRC2,ZCCHC8"
TCGA.AG.A01W.01A	12	122818052	129859080	278	-0.0495	NEUTRAL	NA	45	"AACS,ABCB9,ARL6IP4,ATP6V0A2,BRI3BP,C12orf65,CCDC62,CCDC92,CDK2AP1,CLIP1,DDX55,DENR,DHX37,DNAH10,EIF2B1,FAM101A,GLT1D1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,KNTC1,MPHOSPH9,NCOR2,OGFOD2,PITPNM2,RILPL1,RILPL2,RSRC2,SBNO1,SCARB1,SETD8,SLC15A4,SNRNP35,TCTN2,TMED2,TMEM132B,TMEM132C,TMEM132D,UBC,VPS37B,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AA.A00D.01A	12	122819123	129467436	326	0.1625	NEUTRAL	NA	44	"AACS,ABCB9,ARL6IP4,ATP6V0A2,BRI3BP,C12orf65,CCDC62,CCDC92,CDK2AP1,CLIP1,DDX55,DENR,DHX37,DNAH10,EIF2B1,FAM101A,GLT1D1,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,KNTC1,MPHOSPH9,NCOR2,OGFOD2,PITPNM2,RILPL1,RILPL2,RSRC2,SBNO1,SCARB1,SETD8,SLC15A4,SNRNP35,TCTN2,TMED2,TMEM132B,TMEM132C,UBC,VPS37B,ZCCHC8,ZNF664,ZNF664-FAM101A"
TCGA.AA.A00L.01A	12	122825280	123200079	24	-0.2028	NEUTRAL	NA	6	"CLIP1,HCAR2,HCAR3,KNTC1,RSRC2,ZCCHC8"
TCGA.AG.4009.01A	12	122861917	123249796	84	-0.1622	NEUTRAL	NA	8	"CLIP1,DENR,HCAR1,HCAR2,HCAR3,KNTC1,RSRC2,ZCCHC8"
TCGA.AZ.4684.01A	12	122973872	123310891	93	-0.4987	NEUTRAL	NA	8	"CCDC62,DENR,HCAR1,HCAR2,HCAR3,KNTC1,RSRC2,ZCCHC8"
TCGA.CK.5914.01A	12	122992727	123047133	25	-0.0529	NEUTRAL	NA	2	"KNTC1,RSRC2"
TCGA.AA.A00N.01A	12	123005867	123041880	17	0.3227	NEUTRAL	NA	2	"KNTC1,RSRC2"
TCGA.AG.3909.01A	12	123011311	123065087	27	0.3771	NEUTRAL	NA	2	"KNTC1,RSRC2"
TCGA.AA.A00N.01A	12	123046396	123062167	10	-0.2267	NEUTRAL	NA	1	KNTC1
TCGA.CK.5914.01A	12	123052766	123062167	8	-0.4888	NEUTRAL	NA	1	KNTC1
TCGA.AG.3909.01A	12	123067222	123460868	82	-0.306	NEUTRAL	NA	10	"ABCB9,CCDC62,DENR,HCAR1,HCAR2,HCAR3,HIP1R,KNTC1,OGFOD2,VPS37B"
TCGA.AG.A00H.01A	12	123071180	125575930	343	-0.1065	NEUTRAL	NA	37	"AACS,ABCB9,ARL6IP4,ATP6V0A2,BRI3BP,C12orf65,CCDC62,CCDC92,CDK2AP1,DDX55,DENR,DHX37,DNAH10,EIF2B1,FAM101A,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,KNTC1,MPHOSPH9,NCOR2,OGFOD2,PITPNM2,RILPL1,RILPL2,SBNO1,SCARB1,SETD8,SNRNP35,TCTN2,TMED2,UBC,VPS37B,ZNF664,ZNF664-FAM101A"
TCGA.CK.5914.01A	12	123087084	123214417	20	-0.0123	NEUTRAL	NA	4	"HCAR1,HCAR2,HCAR3,KNTC1"
TCGA.AA.A00N.01A	12	123097607	123214417	14	0.0189	NEUTRAL	NA	4	"HCAR1,HCAR2,HCAR3,KNTC1"
TCGA.AA.A00L.01A	12	123213827	125397553	246	0.1632	NEUTRAL	NA	31	"ABCB9,ARL6IP4,ATP6V0A2,C12orf65,CCDC62,CCDC92,CDK2AP1,DDX55,DENR,DNAH10,EIF2B1,FAM101A,GTF2H3,HCAR1,HIP1R,MPHOSPH9,NCOR2,OGFOD2,PITPNM2,RILPL1,RILPL2,SBNO1,SCARB1,SETD8,SNRNP35,TCTN2,TMED2,UBC,VPS37B,ZNF664,ZNF664-FAM101A"
TCGA.AG.4009.01A	12	123251985	123355385	34	-0.5057	NEUTRAL	NA	4	"CCDC62,DENR,HIP1R,VPS37B"
TCGA.AA.A01Q.01A	12	123262019	123646615	74	-0.3488	NEUTRAL	NA	8	"ABCB9,ARL6IP4,CCDC62,HIP1R,MPHOSPH9,OGFOD2,PITPNM2,VPS37B"
TCGA.AG.3891.01A	12	123310891	123518997	57	0.0074	NEUTRAL	NA	7	"ABCB9,ARL6IP4,CCDC62,HIP1R,OGFOD2,PITPNM2,VPS37B"
TCGA.AA.A01F.01A	12	123332550	123346175	16	0.319	NEUTRAL	NA	1	HIP1R
TCGA.AA.3509.01A	12	123332550	123648467	69	-0.0806	NEUTRAL	NA	7	"ABCB9,ARL6IP4,HIP1R,MPHOSPH9,OGFOD2,PITPNM2,VPS37B"
TCGA.AZ.4684.01A	12	123332550	123648467	69	-0.0738	NEUTRAL	NA	7	"ABCB9,ARL6IP4,HIP1R,MPHOSPH9,OGFOD2,PITPNM2,VPS37B"
TCGA.AA.A02K.01A	12	123333274	123351612	17	-0.3497	NEUTRAL	NA	2	"HIP1R,VPS37B"
TCGA.CK.5914.01A	12	123338552	123485564	51	-0.3224	NEUTRAL	NA	6	"ABCB9,ARL6IP4,HIP1R,OGFOD2,PITPNM2,VPS37B"
TCGA.AA.A00N.01A	12	123339381	123518997	56	-0.2909	NEUTRAL	NA	6	"ABCB9,ARL6IP4,HIP1R,OGFOD2,PITPNM2,VPS37B"
TCGA.AA.A010.01A	12	123340317	123355385	14	-0.2197	NEUTRAL	NA	2	"HIP1R,VPS37B"
TCGA.AA.A01F.01A	12	123351631	123444142	15	-0.4018	NEUTRAL	NA	2	"ABCB9,VPS37B"
TCGA.AA.A02K.01A	12	123352967	123466962	22	0.0552	NEUTRAL	NA	4	"ABCB9,ARL6IP4,OGFOD2,VPS37B"
TCGA.AA.A00Q.01A	12	123352972	123430521	10	-0.426	NEUTRAL	NA	2	"ABCB9,VPS37B"
TCGA.AA.A010.01A	12	123433132	123518997	32	-0.3355	NEUTRAL	NA	4	"ABCB9,ARL6IP4,OGFOD2,PITPNM2"
TCGA.AA.A00Q.01A	12	123433132	131490488	332	0.1468	NEUTRAL	NA	40	"AACS,ABCB9,ADGRD1,ARL6IP4,ATP6V0A2,BRI3BP,C12orf65,CCDC92,CDK2AP1,DDX55,DHX37,DNAH10,EIF2B1,FAM101A,FZD10,GLT1D1,GTF2H3,MPHOSPH9,NCOR2,OGFOD2,PITPNM2,PIWIL1,RAN,RILPL1,RILPL2,RIMBP2,SBNO1,SCARB1,SETD8,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM132B,TMEM132C,TMEM132D,UBC,ZNF664,ZNF664-FAM101A"
TCGA.AG.3909.01A	12	123461151	123705867	43	0.2395	NEUTRAL	NA	4	"ARL6IP4,MPHOSPH9,OGFOD2,PITPNM2"
TCGA.AA.A01F.01A	12	123465664	123481833	14	0.2172	NEUTRAL	NA	2	"ARL6IP4,PITPNM2"
TCGA.AA.A02K.01A	12	123470597	123481834	11	-0.4737	NEUTRAL	NA	1	PITPNM2
TCGA.AA.A02K.01A	12	123485263	133779879	710	0.1467	NEUTRAL	NA	61	"AACS,ADGRD1,ANKLE2,ATP6V0A2,BRI3BP,C12orf65,CCDC92,CDK2AP1,CHFR,DDX51,DDX55,DHX37,DNAH10,EIF2B1,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,GTF2H3,LRCOL1,MMP17,MPHOSPH9,NCOR2,NOC4L,P2RX2,PGAM5,PITPNM2,PIWIL1,POLE,PUS1,PXMP2,RAN,RILPL1,RILPL2,RIMBP2,SBNO1,SCARB1,SETD8,SFSWAP,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF664,ZNF664-FAM101A,ZNF84,ZNF891"
TCGA.AA.A01F.01A	12	123485279	132270961	341	-0.2694	NEUTRAL	NA	38	"AACS,ADGRD1,ATP6V0A2,BRI3BP,C12orf65,CCDC92,CDK2AP1,DDX55,DHX37,DNAH10,EIF2B1,FAM101A,FZD10,GLT1D1,GTF2H3,MPHOSPH9,NCOR2,PITPNM2,PIWIL1,RAN,RILPL1,RILPL2,RIMBP2,SBNO1,SCARB1,SETD8,SFSWAP,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM132B,TMEM132C,TMEM132D,UBC,ZNF664,ZNF664-FAM101A"
TCGA.AG.4009.01A	12	123485564	123518997	7	0.072	NEUTRAL	NA	1	PITPNM2
TCGA.AG.4009.01A	12	123641327	123661186	9	-0.4998	NEUTRAL	NA	1	MPHOSPH9
TCGA.AG.3891.01A	12	123641327	124383178	187	0.3513	NEUTRAL	NA	15	"ATP6V0A2,C12orf65,CDK2AP1,DDX55,DNAH10,EIF2B1,GTF2H3,MPHOSPH9,RILPL1,RILPL2,SBNO1,SETD8,SNRNP35,TCTN2,TMED2"
TCGA.AA.A01Q.01A	12	123647534	123868664	47	0.0964	NEUTRAL	NA	4	"C12orf65,CDK2AP1,MPHOSPH9,SBNO1"
TCGA.AZ.4684.01A	12	123649801	124288216	152	-0.4456	NEUTRAL	NA	15	"ATP6V0A2,C12orf65,CDK2AP1,DDX55,DNAH10,EIF2B1,GTF2H3,MPHOSPH9,RILPL1,RILPL2,SBNO1,SETD8,SNRNP35,TCTN2,TMED2"
TCGA.AA.3509.01A	12	123649801	124305076	157	-0.5008	NEUTRAL	NA	15	"ATP6V0A2,C12orf65,CDK2AP1,DDX55,DNAH10,EIF2B1,GTF2H3,MPHOSPH9,RILPL1,RILPL2,SBNO1,SETD8,SNRNP35,TCTN2,TMED2"
TCGA.AA.A00N.01A	12	123651165	123702891	12	-0.022	NEUTRAL	NA	1	MPHOSPH9
TCGA.CK.5914.01A	12	123651165	123702891	12	-0.2169	NEUTRAL	NA	1	MPHOSPH9
TCGA.AA.A010.01A	12	123661186	123705867	12	-0.1439	NEUTRAL	NA	1	MPHOSPH9
TCGA.AG.4009.01A	12	123664428	123738194	12	0.1012	NEUTRAL	NA	2	"C12orf65,MPHOSPH9"
TCGA.AA.A00N.01A	12	123751680	123789077	5	-0.316	NEUTRAL	NA	2	"CDK2AP1,SBNO1"
TCGA.AG.4009.01A	12	123780403	123834807	25	0.0812	NEUTRAL	NA	1	SBNO1
TCGA.AA.A00N.01A	12	123793816	123820893	17	0.3239	NEUTRAL	NA	1	SBNO1
TCGA.AA.A010.01A	12	123795543	123804400	5	-0.4073	NEUTRAL	NA	1	SBNO1
TCGA.AA.A010.01A	12	123811922	123834807	10	-0.1755	NEUTRAL	NA	1	SBNO1
TCGA.AA.A01Q.01A	12	123889384	124421573	104	-0.0261	NEUTRAL	NA	12	"ATP6V0A2,CCDC92,DDX55,DNAH10,EIF2B1,GTF2H3,RILPL1,RILPL2,SETD8,SNRNP35,TCTN2,TMED2"
TCGA.AG.4009.01A	12	123900364	124184203	60	0.151	NEUTRAL	NA	8	"DDX55,EIF2B1,GTF2H3,RILPL1,RILPL2,SNRNP35,TCTN2,TMED2"
TCGA.AA.A00N.01A	12	123915018	123944344	3	-0.2265	NEUTRAL	NA	2	"RILPL2,SNRNP35"
TCGA.A6.3808.01A	12	123957035	124383178	129	0.2001	NEUTRAL	NA	8	"ATP6V0A2,DDX55,DNAH10,EIF2B1,GTF2H3,RILPL1,TCTN2,TMED2"
TCGA.CK.5914.01A	12	124118021	124156006	13	-0.0338	NEUTRAL	NA	3	"EIF2B1,GTF2H3,TCTN2"
TCGA.AG.3909.01A	12	124118021	124236798	42	-0.2522	NEUTRAL	NA	4	"ATP6V0A2,EIF2B1,GTF2H3,TCTN2"
TCGA.AA.A00N.01A	12	124143997	124171335	8	0.3606	NEUTRAL	NA	2	"GTF2H3,TCTN2"
TCGA.AA.A01I.01A	12	124158115	133778682	459	-0.1399	NEUTRAL	NA	48	"AACS,ADGRD1,ANKLE2,ATP6V0A2,BRI3BP,CCDC92,CHFR,DDX51,DHX37,DNAH10,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NCOR2,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SCARB1,SFSWAP,SLC15A4,STX2,TCTN2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF664,ZNF664-FAM101A,ZNF84,ZNF891"
TCGA.AA.A010.01A	12	124171335	124270241	40	0.0093	NEUTRAL	NA	3	"ATP6V0A2,DNAH10,TCTN2"
TCGA.AG.4009.01A	12	124256101	124270241	7	-0.2823	NEUTRAL	NA	1	DNAH10
TCGA.AG.3909.01A	12	124270241	124285801	7	-0.1891	NEUTRAL	NA	1	DNAH10
TCGA.AG.4009.01A	12	124272302	124383178	42	0.1751	NEUTRAL	NA	1	DNAH10
TCGA.CK.5914.01A	12	124289339	124371642	32	0.0537	NEUTRAL	NA	1	DNAH10
TCGA.AG.A00C.01A	12	124289339	124403176	44	-0.1821	NEUTRAL	NA	1	DNAH10
TCGA.AZ.4684.01A	12	124289339	133778682	549	-0.103	NEUTRAL	NA	46	"AACS,ADGRD1,ANKLE2,BRI3BP,CCDC92,CHFR,DDX51,DHX37,DNAH10,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NCOR2,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SCARB1,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF664,ZNF664-FAM101A,ZNF84,ZNF891"
TCGA.AA.3509.01A	12	124311215	130963419	249	-0.153	NEUTRAL	NA	19	"AACS,BRI3BP,CCDC92,DHX37,DNAH10,FAM101A,FZD10,GLT1D1,NCOR2,PIWIL1,RIMBP2,SCARB1,SLC15A4,TMEM132B,TMEM132C,TMEM132D,UBC,ZNF664,ZNF664-FAM101A"
TCGA.AG.3611.01A	12	124335408	124796348	9	-0.0846	NEUTRAL	NA	5	"CCDC92,DNAH10,FAM101A,ZNF664,ZNF664-FAM101A"
TCGA.CK.5914.01A	12	124377732	125613829	142	-0.4764	NEUTRAL	NA	11	"AACS,BRI3BP,CCDC92,DHX37,DNAH10,FAM101A,NCOR2,SCARB1,UBC,ZNF664,ZNF664-FAM101A"
TCGA.AG.4009.01A	12	124387438	124882598	44	-0.1975	NEUTRAL	NA	6	"CCDC92,DNAH10,FAM101A,NCOR2,ZNF664,ZNF664-FAM101A"
TCGA.AG.3891.01A	12	124387438	124979654	61	-0.1537	NEUTRAL	NA	6	"CCDC92,DNAH10,FAM101A,NCOR2,ZNF664,ZNF664-FAM101A"
TCGA.AA.A00N.01A	12	124393760	124403176	8	-0.1092	NEUTRAL	NA	1	DNAH10
TCGA.AG.3909.01A	12	124395041	124414162	13	-0.4168	NEUTRAL	NA	1	DNAH10
TCGA.AG.3906.01A	12	124395041	124941584	48	-0.3297	NEUTRAL	NA	6	"CCDC92,DNAH10,FAM101A,NCOR2,ZNF664,ZNF664-FAM101A"
TCGA.AA.A010.01A	12	124403176	124911131	61	-0.1077	NEUTRAL	NA	6	"CCDC92,DNAH10,FAM101A,NCOR2,ZNF664,ZNF664-FAM101A"
TCGA.AG.A00C.01A	12	124408263	124957446	34	0.2233	NEUTRAL	NA	6	"CCDC92,DNAH10,FAM101A,NCOR2,ZNF664,ZNF664-FAM101A"
TCGA.AA.A01Q.01A	12	124427231	125626610	66	-0.4714	NEUTRAL	NA	10	"AACS,BRI3BP,CCDC92,DHX37,FAM101A,NCOR2,SCARB1,UBC,ZNF664,ZNF664-FAM101A"
TCGA.A6.6780	12	124441879	129473905	2352	-0.0329	NEUTRAL	NA	14	"AACS,BRI3BP,CCDC92,DHX37,FAM101A,GLT1D1,NCOR2,SCARB1,SLC15A4,TMEM132B,TMEM132C,UBC,ZNF664,ZNF664-FAM101A"
TCGA.AA.A00N.01A	12	124496693	124970937	52	-0.3629	NEUTRAL	NA	4	"FAM101A,NCOR2,ZNF664,ZNF664-FAM101A"
TCGA.AG.3909.01A	12	124496693	125613829	88	-0.1986	NEUTRAL	NA	9	"AACS,BRI3BP,DHX37,FAM101A,NCOR2,SCARB1,UBC,ZNF664,ZNF664-FAM101A"
TCGA.AG.3611.01A	12	124798701	133454089	346	0.2531	NEUTRAL	NA	36	"AACS,ADGRD1,ANKLE2,BRI3BP,CHFR,DDX51,DHX37,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NCOR2,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SCARB1,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,ZNF664-FAM101A"
TCGA.A6.3808.01A	12	124832338	132391962	238	0.1276	NEUTRAL	NA	20	"AACS,ADGRD1,BRI3BP,DHX37,FZD10,GLT1D1,MMP17,NCOR2,PIWIL1,RAN,RIMBP2,SCARB1,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1"
TCGA.AG.4009.01A	12	124885010	125302049	24	0.3649	NEUTRAL	NA	2	"NCOR2,SCARB1"
TCGA.AA.A010.01A	12	124914109	124979654	10	0.261	NEUTRAL	NA	1	NCOR2
TCGA.AA.3862.01A	12	124934289	132498015	234	-0.2002	NEUTRAL	NA	22	"AACS,ADGRD1,BRI3BP,DHX37,EP400,FZD10,GLT1D1,MMP17,NCOR2,PIWIL1,PUS1,RAN,RIMBP2,SCARB1,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1"
TCGA.AA.3861.01A	12	124934289	132626348	266	0.1724	NEUTRAL	NA	23	"AACS,ADGRD1,BRI3BP,DDX51,DHX37,EP400,FZD10,GLT1D1,MMP17,NCOR2,PIWIL1,PUS1,RAN,RIMBP2,SCARB1,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1"
TCGA.AG.3906.01A	12	124957446	126138084	71	0.0242	NEUTRAL	NA	7	"AACS,BRI3BP,DHX37,NCOR2,SCARB1,TMEM132B,UBC"
TCGA.AG.A00C.01A	12	124968094	125302049	14	-0.2678	NEUTRAL	NA	2	"NCOR2,SCARB1"
TCGA.AG.4015	12	125059926	125141714	41	0.1395	NEUTRAL	NA	0	None
TCGA.AG.4015	12	125152349	127307650	986	-0.2134	NEUTRAL	NA	6	"AACS,BRI3BP,DHX37,SCARB1,TMEM132B,UBC"
TCGA.RU.A8FL	12	125246992	132527126	3516	-0.1636	NEUTRAL	NA	21	"AACS,ADGRD1,BRI3BP,DHX37,EP400,FZD10,GLT1D1,MMP17,PIWIL1,PUS1,RAN,RIMBP2,SCARB1,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1"
TCGA.AG.3891.01A	12	125267177	125587487	48	0.249	NEUTRAL	NA	5	"AACS,BRI3BP,DHX37,SCARB1,UBC"
TCGA.AA.A010.01A	12	125396208	125449417	17	0.2633	NEUTRAL	NA	2	"DHX37,UBC"
TCGA.AG.4009.01A	12	125396208	125560999	34	-0.2854	NEUTRAL	NA	4	"AACS,BRI3BP,DHX37,UBC"
TCGA.AG.A00C.01A	12	125396208	125613829	42	0.2714	NEUTRAL	NA	4	"AACS,BRI3BP,DHX37,UBC"
TCGA.AA.A00L.01A	12	125397908	125441526	9	-0.3744	NEUTRAL	NA	2	"DHX37,UBC"
TCGA.AA.3549	12	125423205	133777644	3574	-0.0314	NEUTRAL	NA	38	"AACS,ADGRD1,ANKLE2,BRI3BP,CHFR,DDX51,DHX37,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A00N.01A	12	125432290	125613829	40	-0.3468	NEUTRAL	NA	3	"AACS,BRI3BP,DHX37"
TCGA.AA.A00L.01A	12	125444811	129467436	55	0.1889	NEUTRAL	NA	7	"AACS,BRI3BP,DHX37,GLT1D1,SLC15A4,TMEM132B,TMEM132C"
TCGA.AA.A02R.01A	12	125453108	133778682	282	0.2634	NEUTRAL	NA	38	"AACS,ADGRD1,ANKLE2,BRI3BP,CHFR,DDX51,DHX37,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AG.4009.01A	12	125570824	130184313	48	-0.012	NEUTRAL	NA	6	"AACS,GLT1D1,SLC15A4,TMEM132B,TMEM132C,TMEM132D"
TCGA.AG.3891.01A	12	125591635	130963419	79	-0.1493	NEUTRAL	NA	9	"AACS,FZD10,GLT1D1,PIWIL1,RIMBP2,SLC15A4,TMEM132B,TMEM132C,TMEM132D"
TCGA.AG.A00H.01A	12	125591635	133778682	292	-0.044	NEUTRAL	NA	36	"AACS,ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AG.A00C.01A	12	125618482	129283767	16	-0.434	NEUTRAL	NA	4	"AACS,SLC15A4,TMEM132B,TMEM132C"
TCGA.AA.3982	12	125712448	128760709	1531	-0.0652	NEUTRAL	NA	2	"TMEM132B,TMEM132C"
TCGA.AA.3941	12	125818999	126671029	422	0.2922	NEUTRAL	NA	1	TMEM132B
TCGA.AA.A01Q.01A	12	125833959	130926396	65	-0.0348	NEUTRAL	NA	8	"FZD10,GLT1D1,PIWIL1,RIMBP2,SLC15A4,TMEM132B,TMEM132C,TMEM132D"
TCGA.AA.3811	12	126020030	133777644	3341	0.0295	NEUTRAL	NA	35	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.EI.6507	12	126129191	133777644	3293	0.2959	NEUTRAL	NA	35	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.EI.6883	12	126209165	126589449	207	-0.0063	NEUTRAL	NA	0	None
TCGA.AA.3544	12	126605750	133777644	3047	-0.0608	NEUTRAL	NA	34	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3850	12	126671929	127249168	279	-0.15565	NEUTRAL	NA	0	None
TCGA.AA.3941	12	126671929	127251113	283	0.0052	NEUTRAL	NA	0	None
TCGA.AA.3660	12	126752942	128134168	666	-0.4775	NEUTRAL	NA	0	None
TCGA.AA.3693	12	126857260	133777644	2926	-0.0441	NEUTRAL	NA	34	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.EI.6883	12	127122195	127302964	97	-0.0289	NEUTRAL	NA	0	None
TCGA.AA.3850	12	127249541	128797862	796	0.11415	NEUTRAL	NA	1	TMEM132C
TCGA.AA.3941	12	127259520	129939108	1434	0.3519	NEUTRAL	NA	4	"GLT1D1,SLC15A4,TMEM132C,TMEM132D"
TCGA.AG.4015	12	127317494	127350758	19	0.0107	NEUTRAL	NA	0	None
TCGA.AG.4015	12	127354927	127555733	104	-0.2188	NEUTRAL	NA	0	None
TCGA.AG.4015	12	127569677	127612985	13	0.0834	NEUTRAL	NA	0	None
TCGA.AA.3660	12	128135007	128710298	316	-0.0168	NEUTRAL	NA	0	None
TCGA.AG.3591	12	128254984	129585112	733	-0.2914	NEUTRAL	NA	4	"GLT1D1,SLC15A4,TMEM132C,TMEM132D"
TCGA.AG.4015	12	128390773	132237749	2022	-0.0374	NEUTRAL	NA	11	"ADGRD1,FZD10,GLT1D1,PIWIL1,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132C,TMEM132D"
TCGA.AA.3660	12	128710846	129539328	445	0.3101	NEUTRAL	NA	3	"GLT1D1,SLC15A4,TMEM132C"
TCGA.AA.3982	12	128761299	133777644	1945	0.2274	NEUTRAL	NA	34	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3850	12	128809026	129586394	417	0.35395	NEUTRAL	NA	4	"GLT1D1,SLC15A4,TMEM132C,TMEM132D"
TCGA.CK.5914.01A	12	129153920	130963419	66	-0.3533	NEUTRAL	NA	7	"FZD10,GLT1D1,PIWIL1,RIMBP2,SLC15A4,TMEM132C,TMEM132D"
TCGA.AD.6965	12	129233987	133777644	1693	-0.075	NEUTRAL	NA	33	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.EI.7002	12	129233987	133777644	1694	0.1956	NEUTRAL	NA	33	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.F4.6704	12	129233987	133777644	1694	-0.198	NEUTRAL	NA	33	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A00N.01A	12	129278689	129563051	18	-0.4893	NEUTRAL	NA	3	"GLT1D1,SLC15A4,TMEM132D"
TCGA.AG.A00C.01A	12	129285362	133778682	284	0.0959	NEUTRAL	NA	33	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AG.3906.01A	12	129293893	129383735	6	0.1006	NEUTRAL	NA	2	"GLT1D1,SLC15A4"
TCGA.AG.3909.01A	12	129293893	129569004	15	-0.295	NEUTRAL	NA	3	"GLT1D1,SLC15A4,TMEM132D"
TCGA.EI.6509	12	129348769	133777644	1643	-0.168	NEUTRAL	NA	32	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3660	12	129547124	129796483	165	-0.0593	NEUTRAL	NA	1	TMEM132D
TCGA.AA.A00L.01A	12	129558373	130647470	11	-0.3264	NEUTRAL	NA	2	"FZD10,TMEM132D"
TCGA.AG.3591	12	129585298	133777644	1517	0.082	NEUTRAL	NA	31	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3850	12	129591143	130490616	516	0.14125	NEUTRAL	NA	1	TMEM132D
TCGA.AA.3660	12	129946770	131202550	685	0.0399	NEUTRAL	NA	4	"FZD10,PIWIL1,RIMBP2,TMEM132D"
TCGA.AA.3941	12	129956631	130490616	282	0.3608	NEUTRAL	NA	1	TMEM132D
TCGA.AA.3968	12	130147509	133777644	1161	-0.0163	NEUTRAL	NA	31	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.A6.6653	12	130332477	131749558	686	-0.0475	NEUTRAL	NA	7	"ADGRD1,FZD10,PIWIL1,RAN,RIMBP2,STX2,TMEM132D"
TCGA.AA.A00D.01A	12	130387748	133778682	260	0.2097	NEUTRAL	NA	31	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3850	12	130492008	133777644	1000	0.37465	NEUTRAL	NA	30	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AG.A01W.01A	12	130764533	130836915	14	-0.2312	NEUTRAL	NA	1	PIWIL1
TCGA.AA.A00L.01A	12	130827076	132379500	98	0.1661	NEUTRAL	NA	8	"ADGRD1,MMP17,PIWIL1,RAN,RIMBP2,SFSWAP,STX2,ULK1"
TCGA.AG.3909.01A	12	130839060	130906949	17	0.0395	NEUTRAL	NA	2	"PIWIL1,RIMBP2"
TCGA.AA.A00N.01A	12	130839060	130963419	27	-0.4645	NEUTRAL	NA	2	"PIWIL1,RIMBP2"
TCGA.AG.4009.01A	12	130845704	131291476	27	-0.0463	NEUTRAL	NA	3	"PIWIL1,RIMBP2,STX2"
TCGA.AG.A01W.01A	12	130849516	131080168	56	0.215	NEUTRAL	NA	2	"PIWIL1,RIMBP2"
TCGA.AA.A010.01A	12	130855674	131276387	19	0.3418	NEUTRAL	NA	3	"PIWIL1,RIMBP2,STX2"
TCGA.AM.5820	12	130908436	131202550	143	0.3147	NEUTRAL	NA	1	RIMBP2
TCGA.A6.2686	12	131076872	131748538	286	-0.4065	NEUTRAL	NA	3	"ADGRD1,RAN,STX2"
TCGA.AG.A01W.01A	12	131082403	131105395	10	-0.276	NEUTRAL	NA	0	None
TCGA.AM.5820	12	131202989	131467768	98	0.0006	NEUTRAL	NA	3	"ADGRD1,RAN,STX2"
TCGA.AA.3660	12	131260514	131748538	197	0.0044	NEUTRAL	NA	3	"ADGRD1,RAN,STX2"
TCGA.AG.3891.01A	12	131276387	131360119	12	0.2836	NEUTRAL	NA	2	"RAN,STX2"
TCGA.AA.3509.01A	12	131356530	133778682	286	-0.1139	NEUTRAL	NA	26	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,RAN,SFSWAP,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AG.3906.01A	12	131438952	131498706	12	-0.3251	NEUTRAL	NA	1	ADGRD1
TCGA.AG.3891.01A	12	131438952	131623670	23	-0.2252	NEUTRAL	NA	1	ADGRD1
TCGA.AG.4009.01A	12	131438952	132505682	79	-0.2404	NEUTRAL	NA	6	"ADGRD1,EP400,MMP17,PUS1,SFSWAP,ULK1"
TCGA.AG.3909.01A	12	131438952	132511929	81	-0.4122	NEUTRAL	NA	6	"ADGRD1,EP400,MMP17,PUS1,SFSWAP,ULK1"
TCGA.AM.5820	12	131472078	132617806	382	0.3548	NEUTRAL	NA	6	"ADGRD1,EP400,MMP17,PUS1,SFSWAP,ULK1"
TCGA.AA.3967.01A	12	131488683	132198565	17	-0.4424	NEUTRAL	NA	2	"ADGRD1,SFSWAP"
TCGA.AA.A00Q.01A	12	131498706	132195728	14	-0.3063	NEUTRAL	NA	2	"ADGRD1,SFSWAP"
TCGA.AA.3681	12	131558564	131573890	16	-0.5055	NEUTRAL	NA	1	ADGRD1
TCGA.AA.3681	12	131576001	133777644	448	0.2924	NEUTRAL	NA	25	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.DM.A1HB	12	131576001	133777644	434	0.0565	NEUTRAL	NA	25	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AG.A01W.01A	12	131718984	132288804	121	-0.0644	NEUTRAL	NA	1	SFSWAP
TCGA.A6.2686	12	131749558	131813803	10	0.3397	NEUTRAL	NA	0	None
TCGA.AA.3660	12	131749558	133254444	316	0.3499	NEUTRAL	NA	12	"DDX51,EP400,FBRSL1,GALNT9,LRCOL1,MMP17,NOC4L,P2RX2,POLE,PUS1,SFSWAP,ULK1"
TCGA.A6.6653	12	131773965	133777644	370	-0.0866	NEUTRAL	NA	24	"ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.A6.2686	12	131825137	133777644	360	0.2619	NEUTRAL	NA	24	"ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.D5.6539	12	132022206	133777644	261	-0.0948	NEUTRAL	NA	24	"ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AZ.4681	12	132034227	133777644	258	0.0306	NEUTRAL	NA	24	"ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A01Q.01A	12	132195728	132380106	28	-0.2758	NEUTRAL	NA	3	"MMP17,SFSWAP,ULK1"
TCGA.AG.3891.01A	12	132195728	132398875	30	0.0642	NEUTRAL	NA	3	"MMP17,SFSWAP,ULK1"
TCGA.AA.A00Q.01A	12	132198565	133295296	144	0.1998	NEUTRAL	NA	14	"DDX51,EP400,FBRSL1,GALNT9,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1"
TCGA.AA.3967.01A	12	132199317	133295296	152	0.093	NEUTRAL	NA	14	"DDX51,EP400,FBRSL1,GALNT9,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1"
TCGA.AG.3906.01A	12	132238874	132335443	15	-0.4646	NEUTRAL	NA	2	"MMP17,SFSWAP"
TCGA.AG.4015	12	132243927	133777644	165	-0.4172	NEUTRAL	NA	24	"ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,SFSWAP,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A01F.01A	12	132281741	132423670	21	0.0329	NEUTRAL	NA	4	"MMP17,PUS1,SFSWAP,ULK1"
TCGA.AA.A00L.01A	12	132380106	132428008	18	-0.2706	NEUTRAL	NA	2	"PUS1,ULK1"
TCGA.AG.3906.01A	12	132380106	132688003	65	-0.1573	NEUTRAL	NA	6	"DDX51,EP400,GALNT9,NOC4L,PUS1,ULK1"
TCGA.AA.A01Q.01A	12	132391367	132472203	24	0.3492	NEUTRAL	NA	3	"EP400,PUS1,ULK1"
TCGA.AG.3891.01A	12	132416668	132546654	41	-0.1191	NEUTRAL	NA	2	"EP400,PUS1"
TCGA.AA.A01F.01A	12	132425837	132547134	41	-0.2311	NEUTRAL	NA	2	"EP400,PUS1"
TCGA.AA.A00L.01A	12	132445123	132534820	35	0.2129	NEUTRAL	NA	1	EP400
TCGA.AA.A010.01A	12	132445123	132588534	45	0.3598	NEUTRAL	NA	1	EP400
TCGA.AA.A01Q.01A	12	132474468	132561001	38	-0.299	NEUTRAL	NA	1	EP400
TCGA.AA.A00L.01A	12	132537629	133202654	26	-0.114	NEUTRAL	NA	8	"DDX51,EP400,FBRSL1,GALNT9,LRCOL1,NOC4L,P2RX2,POLE"
TCGA.AG.3891.01A	12	132547134	132685622	20	-0.4046	NEUTRAL	NA	4	"DDX51,EP400,GALNT9,NOC4L"
TCGA.AA.A01F.01A	12	132549192	133202654	22	0.0974	NEUTRAL	NA	8	"DDX51,EP400,FBRSL1,GALNT9,LRCOL1,NOC4L,P2RX2,POLE"
TCGA.AG.3909.01A	12	132561904	133241847	43	-0.1367	NEUTRAL	NA	8	"DDX51,EP400,FBRSL1,GALNT9,LRCOL1,NOC4L,P2RX2,POLE"
TCGA.RU.A8FL	12	132570197	133459269	97	-0.2464	NEUTRAL	NA	12	"ANKLE2,CHFR,DDX51,FBRSL1,GALNT9,GOLGA3,LRCOL1,NOC4L,P2RX2,PGAM5,POLE,PXMP2"
TCGA.AA.3862.01A	12	132593090	133778682	141	-0.2755	NEUTRAL	NA	19	"ANKLE2,CHFR,DDX51,FBRSL1,GALNT9,GOLGA3,LRCOL1,NOC4L,P2RX2,PGAM5,POLE,PXMP2,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3939.01A	12	132624931	133197798	36	0.034	NEUTRAL	NA	6	"DDX51,FBRSL1,GALNT9,LRCOL1,NOC4L,P2RX2"
TCGA.AA.A010.01A	12	132681615	132862819	10	-0.0118	NEUTRAL	NA	1	GALNT9
TCGA.A6.3808.01A	12	132681615	133281141	74	-0.1111	NEUTRAL	NA	6	"FBRSL1,GALNT9,LRCOL1,P2RX2,POLE,PXMP2"
TCGA.AG.3891.01A	12	132688003	133732051	105	0.0777	NEUTRAL	NA	16	"ANKLE2,CHFR,FBRSL1,GALNT9,GOLGA3,LRCOL1,P2RX2,PGAM5,POLE,PXMP2,ZNF10,ZNF140,ZNF26,ZNF605,ZNF84,ZNF891"
TCGA.AA.3861.01A	12	133150868	133778682	111	0.0131	NEUTRAL	NA	16	"ANKLE2,CHFR,FBRSL1,GOLGA3,LRCOL1,P2RX2,PGAM5,POLE,PXMP2,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A01Q.01A	12	133195402	133657820	96	-0.4363	NEUTRAL	NA	11	"ANKLE2,CHFR,GOLGA3,P2RX2,PGAM5,POLE,PXMP2,ZNF140,ZNF26,ZNF605,ZNF84"
TCGA.AG.A01L.01A	12	133202654	133778682	100	0.0965	NEUTRAL	NA	13	"ANKLE2,CHFR,GOLGA3,PGAM5,POLE,PXMP2,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AM.5820	12	133203296	133434502	57	0.2734	NEUTRAL	NA	6	"ANKLE2,CHFR,GOLGA3,PGAM5,POLE,PXMP2"
TCGA.AG.4009.01A	12	133208892	133250134	27	-0.0546	NEUTRAL	NA	1	POLE
TCGA.AA.A00L.01A	12	133208892	133281141	40	0.28	NEUTRAL	NA	2	"POLE,PXMP2"
TCGA.AA.A01F.01A	12	133208892	133778682	94	-0.2474	NEUTRAL	NA	13	"ANKLE2,CHFR,GOLGA3,PGAM5,POLE,PXMP2,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A00N.01A	12	133209219	133251934	27	0.0687	NEUTRAL	NA	1	POLE
TCGA.AG.3906.01A	12	133218724	133317942	39	0.075	NEUTRAL	NA	4	"ANKLE2,PGAM5,POLE,PXMP2"
TCGA.AA.3939.01A	12	133225478	133272431	28	0.3622	NEUTRAL	NA	2	"POLE,PXMP2"
TCGA.AG.4009.01A	12	133251934	133257147	8	-0.4292	NEUTRAL	NA	1	POLE
TCGA.AG.3909.01A	12	133277784	133350711	15	-0.0837	NEUTRAL	NA	4	"ANKLE2,GOLGA3,PGAM5,PXMP2"
TCGA.AA.A00A.01A	12	133281141	133384437	22	-0.2407	NEUTRAL	NA	4	"ANKLE2,GOLGA3,PGAM5,PXMP2"
TCGA.AA.3939.01A	12	133291394	133306246	5	-0.4152	NEUTRAL	NA	2	"ANKLE2,PGAM5"
TCGA.AA.A00L.01A	12	133291394	133357334	9	-0.4094	NEUTRAL	NA	3	"ANKLE2,GOLGA3,PGAM5"
TCGA.AG.4009.01A	12	133306246	133778682	57	-0.262	NEUTRAL	NA	10	"ANKLE2,CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.A6.3808.01A	12	133310934	133778682	59	-0.1885	NEUTRAL	NA	10	"ANKLE2,CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3967.01A	12	133319692	133778682	54	0.0662	NEUTRAL	NA	10	"ANKLE2,CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A00Q.01A	12	133349639	133383712	18	-0.2037	NEUTRAL	NA	1	GOLGA3
TCGA.AA.A00L.01A	12	133358834	133778682	47	0.1099	NEUTRAL	NA	9	"CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A010.01A	12	133360700	133438006	27	-0.3511	NEUTRAL	NA	2	"CHFR,GOLGA3"
TCGA.AG.3906.01A	12	133360700	133778682	40	-0.0439	NEUTRAL	NA	9	"CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A00Q.01A	12	133384437	133764428	33	0.1432	NEUTRAL	NA	9	"CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A00A.01A	12	133384799	133778682	30	0.1409	NEUTRAL	NA	9	"CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AM.5820	12	133434552	133777644	32	-0.1113	NEUTRAL	NA	8	"CHFR,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A010.01A	12	133463735	133509569	3	-0.4459	NEUTRAL	NA	2	"CHFR,ZNF605"
TCGA.RU.A8FL	12	133464499	133777644	26	-0.0029	NEUTRAL	NA	7	"ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AG.3611.01A	12	133501942	133778682	9	0.0237	NEUTRAL	NA	7	"ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AG.3909.01A	12	133509569	133778682	12	0.0093	NEUTRAL	NA	7	"ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A010.01A	12	133682048	133764428	7	0.2241	NEUTRAL	NA	4	"ZNF10,ZNF140,ZNF268,ZNF891"
TCGA.AA.A00N.01A	12	133682048	133778682	10	0.1658	NEUTRAL	NA	4	"ZNF10,ZNF140,ZNF268,ZNF891"
TCGA.CK.5914.01A	12	133682048	133778682	10	-0.005	NEUTRAL	NA	4	"ZNF10,ZNF140,ZNF268,ZNF891"
TCGA.AG.3891.01A	12	133758504	133778682	5	-0.3611	NEUTRAL	NA	1	ZNF268
TCGA.AA.A010.01A	12	133768023	133778682	3	-0.4171	NEUTRAL	NA	1	ZNF268
TCGA.AG.A01W.01A	13	18221863	20229557	118	0.0728	NEUTRAL	NA	3	"MPHOSPH8,TPTE2,TUBA3C"
TCGA.AG.A036.01A	13	18221863	112780937	3158	0.2024	NEUTRAL	NA	288	Too-Many
TCGA.CK.4952.01A	13	18498070	34414906	897	-0.0616	NEUTRAL	NA	80	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DC.6160.01A	13	18498070	114107413	3389	0.3007	NEUTRAL	NA	302	Too-Many
TCGA.AG.A026	13	19212261	19238082	5	-0.1648	NEUTRAL	NA	0	None
TCGA.DY.A0XA	13	19212261	19238082	5	-0.1372	NEUTRAL	NA	0	None
TCGA.5M.AAT5	13	19212261	19257567	7	0.247	NEUTRAL	NA	0	None
TCGA.AU.3779	13	19212261	19257567	7	-0.4117	NEUTRAL	NA	0	None
TCGA.DM.A28F	13	19212261	19257567	7	-0.3377	NEUTRAL	NA	0	None
TCGA.AA.3844	13	19212261	19294775	12	-0.1095	NEUTRAL	NA	0	None
TCGA.A6.2675	13	19212261	19307315	16	-0.0001	NEUTRAL	NA	0	None
TCGA.CM.5348	13	19212261	19311240	17	0.2911	NEUTRAL	NA	0	None
TCGA.RU.A8FL	13	19212261	19426561	24	0.2685	NEUTRAL	NA	0	None
TCGA.AZ.4308	13	19212261	19487048	34	0.3558	NEUTRAL	NA	0	None
TCGA.AG.3583	13	19212261	19576379	61	0.3211	NEUTRAL	NA	0	None
TCGA.AF.6655	13	19212261	19581841	62	0.1395	NEUTRAL	NA	0	None
TCGA.CM.5349	13	19212261	19581841	62	0.0948	NEUTRAL	NA	0	None
TCGA.G4.6299	13	19212261	19581841	62	0.2011	NEUTRAL	NA	0	None
TCGA.A6.6648	13	19212261	19590335	66	0.209	NEUTRAL	NA	0	None
TCGA.AA.3532	13	19212261	19700782	119	0.2313	NEUTRAL	NA	0	None
TCGA.QL.A97D	13	19212261	19759646	159	0.2621	NEUTRAL	NA	1	TUBA3C
TCGA.F5.6465	13	19212261	19834618	173	0.2947	NEUTRAL	NA	1	TUBA3C
TCGA.AA.3982	13	19212261	19889996	188	0.2401	NEUTRAL	NA	1	TUBA3C
TCGA.AA.3864	13	19212261	19894204	189	0.0453	NEUTRAL	NA	1	TUBA3C
TCGA.AA.3850	13	19212261	19906654	198	0.02955	NEUTRAL	NA	1	TUBA3C
TCGA.AA.3811	13	19212261	19909256	203	0.3263	NEUTRAL	NA	1	TUBA3C
TCGA.AG.3731	13	19212261	19947613	213	-0.4279	NEUTRAL	NA	1	TUBA3C
TCGA.G4.6294	13	19212261	19982161	230	0.377	NEUTRAL	NA	1	TUBA3C
TCGA.AA.3712	13	19212261	19986471	232	-0.0707	NEUTRAL	NA	1	TUBA3C
TCGA.D5.6923	13	19212261	20109716	246	-0.1763	NEUTRAL	NA	2	"TPTE2,TUBA3C"
TCGA.AA.3488	13	19212261	20488154	300	-0.0355	NEUTRAL	NA	5	"MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM5"
TCGA.DY.A1DG	13	19212261	21053455	520	-0.0072	NEUTRAL	NA	10	"CRYL1,GJA3,GJB2,GJB6,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.DM.A1D0	13	19212261	21398978	600	0.369	NEUTRAL	NA	14	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,MPHOSPH8,N6AMT2,PSPC1,TPTE2,TUBA3C,XPO4,ZMYM2,ZMYM5"
TCGA.G5.6641	13	19212261	21915113	758	0.1448	NEUTRAL	NA	18	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZMYM2,ZMYM5"
TCGA.AA.3977	13	19212261	22316049	872	0.1152	NEUTRAL	NA	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.EI.7004	13	19212261	22620280	1039	-0.34	NEUTRAL	NA	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.QG.A5YX	13	19212261	22653198	1059	-0.005	NEUTRAL	NA	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DC.6683	13	19212261	22668806	1073	0.2872	NEUTRAL	NA	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3968	13	19212261	22891550	1221	0.3493	NEUTRAL	NA	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.EI.6508	13	19212261	23754377	1570	-0.0244	NEUTRAL	NA	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3875	13	19212261	24266890	1812	-0.371	NEUTRAL	NA	24	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3833	13	19212261	25977958	2571	0.0087	NEUTRAL	NA	38	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.3591	13	19212261	26017623	2596	-0.2098	NEUTRAL	NA	38	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.3883	13	19212261	26675539	2871	0.3549	NEUTRAL	NA	39	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.D5.5539	13	19212261	26709459	2886	0.2258	NEUTRAL	NA	39	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.4021	13	19212261	26850637	2949	-0.0011	NEUTRAL	NA	41	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3979	13	19212261	27256101	3085	-0.0111	NEUTRAL	NA	42	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AF.2693	13	19212261	27344132	3138	-0.0157	NEUTRAL	NA	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.D5.6533	13	19212261	27469767	3199	0.3439	NEUTRAL	NA	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.CM.4743	13	19212261	27479900	3219	-0.3296	NEUTRAL	NA	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3819	13	19212261	27481898	3224	0.0067	NEUTRAL	NA	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3519	13	19212261	27512364	3243	0.2421	NEUTRAL	NA	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AF.5654	13	19212261	27513305	3239	-0.0141	NEUTRAL	NA	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3696	13	19212261	27523025	3256	0.0029	NEUTRAL	NA	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3531	13	19212261	27603768	3314	0.2736	NEUTRAL	NA	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.A6.5667	13	19212261	27921500	3423	0.3003	NEUTRAL	NA	46	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DC.4749	13	19212261	28191894	3535	0.3063	NEUTRAL	NA	49	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DC.6157	13	19212261	29245420	3918	0.3642	NEUTRAL	NA	58	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.CM.6675	13	19212261	29436414	4022	-0.0007	NEUTRAL	NA	59	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SPATA13,TNFRSF19,TPTE2,TUBA3C,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3518	13	19212261	31025633	4728	-0.0054	NEUTRAL	NA	63	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,KATNAL1,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3680	13	19212261	32477205	5396	-0.0027	NEUTRAL	NA	71	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.G4.6295	13	19212261	33387498	5649	0.3027	NEUTRAL	NA	77	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.G4.6626	13	19212261	33792940	5906	0.306	NEUTRAL	NA	79	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.CK.5915	13	19212261	35188268	6479	-0.2602	NEUTRAL	NA	80	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3845	13	19212261	35721106	6605	0.013	NEUTRAL	NA	81	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.A6.6649	13	19212261	37849501	7367	0.1495	NEUTRAL	NA	95	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CRYL1,CSNK1A1L,DCLK1,EXOSC8,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SERTM1,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3866	13	19212261	37878696	7379	0.2594	NEUTRAL	NA	95	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CRYL1,CSNK1A1L,DCLK1,EXOSC8,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SERTM1,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DM.A0XD	13	19212261	38769015	7745	-0.0106	NEUTRAL	NA	97	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CRYL1,CSNK1A1L,DCLK1,EXOSC8,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,POSTN,PSPC1,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SERTM1,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,TPTE2,TRPC4,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3664	13	19212261	39309519	7994	-0.0168	NEUTRAL	NA	99	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CRYL1,CSNK1A1L,DCLK1,EXOSC8,FGF9,FLT1,FLT3,FREM2,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,POSTN,PSPC1,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SERTM1,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,TPTE2,TRPC4,TUBA3C,UBL3,UFM1,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AM.5820	13	19212261	39941596	8251	-0.0311	NEUTRAL	NA	103	Too-Many
TCGA.5M.AAT4	13	19212261	41961174	8945	0.0465	NEUTRAL	NA	113	Too-Many
TCGA.CM.4747	13	19212261	41984741	8939	0.3774	NEUTRAL	NA	113	Too-Many
TCGA.AG.A01Y	13	19212261	42137446	8996	-0.0132	NEUTRAL	NA	114	Too-Many
TCGA.DM.A1D8	13	19212261	42814099	9239	0.0631	NEUTRAL	NA	116	Too-Many
TCGA.AA.3848	13	19212261	45464856	10344	0.0865	NEUTRAL	NA	127	Too-Many
TCGA.AZ.4315	13	19212261	45752205	10378	-0.0152	NEUTRAL	NA	130	Too-Many
TCGA.F4.6461	13	19212261	46154255	10466	-0.0025	NEUTRAL	NA	135	Too-Many
TCGA.AY.6196	13	19212261	47597446	10938	-0.086	NEUTRAL	NA	145	Too-Many
TCGA.F5.6814	13	19212261	48452460	11410	-0.0571	NEUTRAL	NA	145	Too-Many
TCGA.DT.5265	13	19212261	55083956	13193	-0.4758	NEUTRAL	NA	187	Too-Many
TCGA.G4.6322	13	19212261	56519744	13541	0.0166	NEUTRAL	NA	187	Too-Many
TCGA.AD.6888	13	19212261	57182856	13651	-0.0103	NEUTRAL	NA	187	Too-Many
TCGA.DC.6682	13	19212261	58405902	13825	0.078	NEUTRAL	NA	193	Too-Many
TCGA.AG.3732	13	19212261	61620716	14831	0.0589	NEUTRAL	NA	195	Too-Many
TCGA.AA.A022	13	19212261	63358936	15280	0.0413	NEUTRAL	NA	196	Too-Many
TCGA.A6.4105	13	19212261	64224204	15525	0.0987	NEUTRAL	NA	196	Too-Many
TCGA.WS.AB45	13	19212261	64442700	15554	0.0044	NEUTRAL	NA	196	Too-Many
TCGA.AA.3950	13	19212261	64978685	15709	-0.0092	NEUTRAL	NA	196	Too-Many
TCGA.DM.A1D9	13	19212261	65125023	15747	-0.0039	NEUTRAL	NA	196	Too-Many
TCGA.AA.3673	13	19212261	65432789	15861	0.2235	NEUTRAL	NA	196	Too-Many
TCGA.EI.6885	13	19212261	66686295	16143	0.0239	NEUTRAL	NA	196	Too-Many
TCGA.AA.3966	13	19212261	68095174	16583	0.0256	NEUTRAL	NA	197	Too-Many
TCGA.DM.A1HB	13	19212261	68108292	16303	-0.0158	NEUTRAL	NA	197	Too-Many
TCGA.DM.A280	13	19212261	69235365	16825	0.2341	NEUTRAL	NA	197	Too-Many
TCGA.AD.5900	13	19212261	70292963	17165	-0.003	NEUTRAL	NA	198	Too-Many
TCGA.AA.3986	13	19212261	70804395	17362	0.3492	NEUTRAL	NA	198	Too-Many
TCGA.AA.A01S	13	19212261	71285665	17549	-0.01375	NEUTRAL	NA	198	Too-Many
TCGA.CA.5254	13	19212261	72511248	17846	0.1678	NEUTRAL	NA	199	Too-Many
TCGA.D5.6930	13	19212261	72944938	18082	-0.0064	NEUTRAL	NA	199	Too-Many
TCGA.DM.A0XF	13	19212261	73503846	18308	-0.0002	NEUTRAL	NA	203	Too-Many
TCGA.A6.6137	13	19212261	73577727	18340	0.2627	NEUTRAL	NA	203	Too-Many
TCGA.AA.3952	13	19212261	73604518	18327	-0.012	NEUTRAL	NA	203	Too-Many
TCGA.AD.6895	13	19212261	73604518	18317	0.0148	NEUTRAL	NA	203	Too-Many
TCGA.AA.3870	13	19212261	74601934	18753	0.3562	NEUTRAL	NA	205	Too-Many
TCGA.AA.3989	13	19212261	74601934	18754	0.3236	NEUTRAL	NA	205	Too-Many
TCGA.F4.6807	13	19212261	74735829	18783	0.32	NEUTRAL	NA	205	Too-Many
TCGA.BM.6198	13	19212261	80778952	21090	0.02585	NEUTRAL	NA	222	Too-Many
TCGA.AA.A01T	13	19212261	82135915	21454	0.3084	NEUTRAL	NA	223	Too-Many
TCGA.AZ.6601	13	19212261	83899651	21925	-0.0075	NEUTRAL	NA	223	Too-Many
TCGA.F4.6809	13	19212261	86756036	22763	0.3111	NEUTRAL	NA	225	Too-Many
TCGA.A6.2686	13	19212261	87284410	22894	-0.0602	NEUTRAL	NA	225	Too-Many
TCGA.DC.6155	13	19212261	90424244	23504	0.0261	NEUTRAL	NA	226	Too-Many
TCGA.AH.6897	13	19212261	93331052	24565	0.2699	NEUTRAL	NA	227	Too-Many
TCGA.A6.5661	13	19212261	95451270	25367	0.0721	NEUTRAL	NA	232	Too-Many
TCGA.A6.2672	13	19212261	95474945	25329	0.3243	NEUTRAL	NA	232	Too-Many
TCGA.DM.A1D7	13	19212261	95551069	25469	0.2668	NEUTRAL	NA	232	Too-Many
TCGA.AF.2689	13	19212261	95614922	25494	0.2564	NEUTRAL	NA	232	Too-Many
TCGA.AA.3522	13	19212261	95627009	25502	0.0231	NEUTRAL	NA	232	Too-Many
TCGA.AA.3956	13	19212261	97333863	26023	0.3027	NEUTRAL	NA	238	Too-Many
TCGA.A6.6653	13	19212261	100591942	27228	0.0006	NEUTRAL	NA	252	Too-Many
TCGA.AA.3949	13	19212261	105806799	29561	0.1304	NEUTRAL	NA	269	Too-Many
TCGA.AZ.6605	13	19212261	108774155	30891	0.3476	NEUTRAL	NA	273	Too-Many
TCGA.CM.6164	13	19212261	109592064	31399	0.2021	NEUTRAL	NA	277	Too-Many
TCGA.DC.5869	13	19212261	110338481	31684	0.3257	NEUTRAL	NA	277	Too-Many
TCGA.DM.A28K	13	19212261	110672967	31811	0.0479	NEUTRAL	NA	278	Too-Many
TCGA.A6.5665	13	19212261	110848916	31926	0.0513	NEUTRAL	NA	279	Too-Many
TCGA.AD.6890	13	19212261	111584452	32369	0.1434	NEUTRAL	NA	285	Too-Many
TCGA.AM.5821	13	19212261	115086043	33385	-0.0291	NEUTRAL	NA	314	Too-Many
TCGA.3L.AA1B	13	19212261	115106995	33463	0.2017	NEUTRAL	NA	314	Too-Many
TCGA.5M.AAT6	13	19212261	115106995	33465	0.1718	NEUTRAL	NA	314	Too-Many
TCGA.5M.AATA	13	19212261	115106995	33440	0.0125	NEUTRAL	NA	314	Too-Many
TCGA.A6.2677	13	19212261	115106995	30499	1.00E-04	NEUTRAL	NA	314	Too-Many
TCGA.A6.2682	13	19212261	115106995	32875	0.1826	NEUTRAL	NA	314	Too-Many
TCGA.A6.2684	13	19212261	115106995	30480	0.0073	NEUTRAL	NA	314	Too-Many
TCGA.A6.2685	13	19212261	115106995	33443	-0.0023	NEUTRAL	NA	314	Too-Many
TCGA.A6.3809	13	19212261	115106995	30494	-0.0167	NEUTRAL	NA	314	Too-Many
TCGA.A6.5657	13	19212261	115106995	33404	0.0473	NEUTRAL	NA	314	Too-Many
TCGA.A6.5664	13	19212261	115106995	33377	-0.0301	NEUTRAL	NA	314	Too-Many
TCGA.A6.6141	13	19212261	115106995	33450	0.0139	NEUTRAL	NA	314	Too-Many
TCGA.A6.6651	13	19212261	115106995	33298	0.2481	NEUTRAL	NA	314	Too-Many
TCGA.A6.6654	13	19212261	115106995	33388	0.3307	NEUTRAL	NA	314	Too-Many
TCGA.A6.6780	13	19212261	115106995	33380	-0.0141	NEUTRAL	NA	314	Too-Many
TCGA.A6.6781	13	19212261	115106995	30444	0.0053	NEUTRAL	NA	314	Too-Many
TCGA.A6.A565	13	19212261	115106995	33266	0.0103	NEUTRAL	NA	314	Too-Many
TCGA.A6.A566	13	19212261	115106995	33205	-0.0087	NEUTRAL	NA	314	Too-Many
TCGA.AA.3489	13	19212261	115106995	33358	0.1797	NEUTRAL	NA	314	Too-Many
TCGA.AA.3492	13	19212261	115106995	33468	-0.0094	NEUTRAL	NA	314	Too-Many
TCGA.AA.3494	13	19212261	115106995	33464	0.0403	NEUTRAL	NA	314	Too-Many
TCGA.AA.3495	13	19212261	115106995	33467	0.2789	NEUTRAL	NA	314	Too-Many
TCGA.AA.3502	13	19212261	115106995	33465	0.0119	NEUTRAL	NA	314	Too-Many
TCGA.AA.3510	13	19212261	115106995	33459	-0.0033	NEUTRAL	NA	314	Too-Many
TCGA.AA.3514	13	19212261	115106995	33458	-0.0157	NEUTRAL	NA	314	Too-Many
TCGA.AA.3516	13	19212261	115106995	33422	-0.0146	NEUTRAL	NA	314	Too-Many
TCGA.AA.3526	13	19212261	115106995	33453	0.0042	NEUTRAL	NA	314	Too-Many
TCGA.AA.3529	13	19212261	115106995	33452	-0.0197	NEUTRAL	NA	314	Too-Many
TCGA.AA.3555	13	19212261	115106995	33485	-0.0085	NEUTRAL	NA	314	Too-Many
TCGA.AA.3556	13	19212261	115106995	33380	-0.1757	NEUTRAL	NA	314	Too-Many
TCGA.AA.3560	13	19212261	115106995	33479	0.2056	NEUTRAL	NA	314	Too-Many
TCGA.AA.3655	13	19212261	115106995	33469	0.048	NEUTRAL	NA	314	Too-Many
TCGA.AA.3663	13	19212261	115106995	33394	-0.0094	NEUTRAL	NA	314	Too-Many
TCGA.AA.3675	13	19212261	115106995	33491	-0.0107	NEUTRAL	NA	314	Too-Many
TCGA.AA.3678	13	19212261	115106995	33490	-0.0147	NEUTRAL	NA	314	Too-Many
TCGA.AA.3684	13	19212261	115106995	33494	0.1084	NEUTRAL	NA	314	Too-Many
TCGA.AA.3692	13	19212261	115106995	33488	0.014	NEUTRAL	NA	314	Too-Many
TCGA.AA.3695	13	19212261	115106995	33497	0.1735	NEUTRAL	NA	314	Too-Many
TCGA.AA.3710	13	19212261	115106995	33458	-0.0137	NEUTRAL	NA	314	Too-Many
TCGA.AA.3713	13	19212261	115106995	33459	0.0105	NEUTRAL	NA	314	Too-Many
TCGA.AA.3715	13	19212261	115106995	33492	0.089	NEUTRAL	NA	314	Too-Many
TCGA.AA.3821	13	19212261	115106995	33432	-0.0142	NEUTRAL	NA	314	Too-Many
TCGA.AA.3831	13	19212261	115106995	33452	-0.007	NEUTRAL	NA	314	Too-Many
TCGA.AA.3837	13	19212261	115106995	33496	-0.0082	NEUTRAL	NA	314	Too-Many
TCGA.AA.3851	13	19212261	115106995	33454	-0.0096	NEUTRAL	NA	314	Too-Many
TCGA.AA.3852	13	19212261	115106995	33499	0.0029	NEUTRAL	NA	314	Too-Many
TCGA.AA.3854	13	19212261	115106995	33498	-0.0408	NEUTRAL	NA	314	Too-Many
TCGA.AA.3856	13	19212261	115106995	33499	0.2545	NEUTRAL	NA	314	Too-Many
TCGA.AA.3869	13	19212261	115106995	33449	0.3695	NEUTRAL	NA	314	Too-Many
TCGA.AA.3877	13	19212261	115106995	33469	-0.0247	NEUTRAL	NA	314	Too-Many
TCGA.AA.3947	13	19212261	115106995	33422	-0.0022	NEUTRAL	NA	314	Too-Many
TCGA.AA.3971	13	19212261	115106995	33458	0.3129	NEUTRAL	NA	314	Too-Many
TCGA.AA.3984	13	19212261	115106995	33434	-0.0293	NEUTRAL	NA	314	Too-Many
TCGA.AA.A01P	13	19212261	115106995	33438	0.0093	NEUTRAL	NA	314	Too-Many
TCGA.AA.A01R	13	19212261	115106995	33468	0.0012	NEUTRAL	NA	314	Too-Many
TCGA.AA.A01V	13	19212261	115106995	33466	-0.0117	NEUTRAL	NA	314	Too-Many
TCGA.AA.A01X	13	19212261	115106995	33406	-0.0074	NEUTRAL	NA	314	Too-Many
TCGA.AA.A01Z	13	19212261	115106995	33455	-0.0091	NEUTRAL	NA	314	Too-Many
TCGA.AA.A02O	13	19212261	115106995	33470	0.0051	NEUTRAL	NA	314	Too-Many
TCGA.AA.A03F	13	19212261	115106995	33468	0.0326	NEUTRAL	NA	314	Too-Many
TCGA.AA.A03J	13	19212261	115106995	32819	0.3484	NEUTRAL	NA	314	Too-Many
TCGA.AD.6548	13	19212261	115106995	33354	0.101	NEUTRAL	NA	314	Too-Many
TCGA.AD.6889	13	19212261	115106995	33423	0.0246	NEUTRAL	NA	314	Too-Many
TCGA.AD.6964	13	19212261	115106995	33427	0.028	NEUTRAL	NA	314	Too-Many
TCGA.AD.A5EJ	13	19212261	115106995	33273	0.0026	NEUTRAL	NA	314	Too-Many
TCGA.AF.2687	13	19212261	115106995	33382	0.1983	NEUTRAL	NA	314	Too-Many
TCGA.AF.2690	13	19212261	115106995	33474	0.2064	NEUTRAL	NA	314	Too-Many
TCGA.AF.6672	13	19212261	115106995	33398	0.3706	NEUTRAL	NA	314	Too-Many
TCGA.AF.A56L	13	19212261	115106995	33392	0.2908	NEUTRAL	NA	314	Too-Many
TCGA.AG.3574	13	19212261	115106995	33482	-0.0185	NEUTRAL	NA	314	Too-Many
TCGA.AG.3580	13	19212261	115106995	33476	-0.0151	NEUTRAL	NA	314	Too-Many
TCGA.AG.3581	13	19212261	115106995	33473	0.3785	NEUTRAL	NA	314	Too-Many
TCGA.AG.3584	13	19212261	115106995	33471	-0.0069	NEUTRAL	NA	314	Too-Many
TCGA.AG.3598	13	19212261	115106995	33396	-0.009	NEUTRAL	NA	314	Too-Many
TCGA.AG.3599	13	19212261	115106995	33443	-0.0162	NEUTRAL	NA	314	Too-Many
TCGA.AG.3726	13	19212261	115106995	33482	-0.0209	NEUTRAL	NA	314	Too-Many
TCGA.AG.3878	13	19212261	115106995	33497	-0.0321	NEUTRAL	NA	314	Too-Many
TCGA.AG.3881	13	19212261	115106995	33491	0.0173	NEUTRAL	NA	314	Too-Many
TCGA.AG.3890	13	19212261	115106995	33378	0.2094	NEUTRAL	NA	314	Too-Many
TCGA.AG.3892	13	19212261	115106995	33385	-0.0016	NEUTRAL	NA	314	Too-Many
TCGA.AG.3898	13	19212261	115106995	33373	-0.0093	NEUTRAL	NA	314	Too-Many
TCGA.AG.3901	13	19212261	115106995	33394	0	NEUTRAL	NA	314	Too-Many
TCGA.AG.3902	13	19212261	115106995	33389	0.2685	NEUTRAL	NA	314	Too-Many
TCGA.AG.4008	13	19212261	115106995	33266	0.3656	NEUTRAL	NA	314	Too-Many
TCGA.AG.A020	13	19212261	115106995	33427	-0.1072	NEUTRAL	NA	314	Too-Many
TCGA.AG.A02N	13	19212261	115106995	33438	-0.0065	NEUTRAL	NA	314	Too-Many
TCGA.AH.6544	13	19212261	115106995	33389	0.2628	NEUTRAL	NA	314	Too-Many
TCGA.AH.6547	13	19212261	115106995	33411	0.0721	NEUTRAL	NA	314	Too-Many
TCGA.AH.6643	13	19212261	115106995	33388	0.3247	NEUTRAL	NA	314	Too-Many
TCGA.AH.6903	13	19212261	115106995	33394	-0.0001	NEUTRAL	NA	314	Too-Many
TCGA.AU.6004	13	19212261	115106995	33208	0.0098	NEUTRAL	NA	314	Too-Many
TCGA.AY.6386	13	19212261	115106995	33461	0.0069	NEUTRAL	NA	314	Too-Many
TCGA.AY.A69D	13	19212261	115106995	33459	0.0043	NEUTRAL	NA	314	Too-Many
TCGA.AY.A71X	13	19212261	115106995	33468	0.0147	NEUTRAL	NA	314	Too-Many
TCGA.AZ.4323	13	19212261	115106995	33327	0.1613	NEUTRAL	NA	314	Too-Many
TCGA.AZ.4614	13	19212261	115106995	33117	0.0096	NEUTRAL	NA	314	Too-Many
TCGA.AZ.4615	13	19212261	115106995	33461	-0.0044	NEUTRAL	NA	314	Too-Many
TCGA.AZ.4616	13	19212261	115106995	33366	0.1056	NEUTRAL	NA	314	Too-Many
TCGA.AZ.5407	13	19212261	115106995	33474	0.0491	NEUTRAL	NA	314	Too-Many
TCGA.AZ.6599	13	19212261	115106995	33473	0.028	NEUTRAL	NA	314	Too-Many
TCGA.AZ.6607	13	19212261	115106995	33358	-0.37	NEUTRAL	NA	314	Too-Many
TCGA.CA.5255	13	19212261	115106995	33346	0.1329	NEUTRAL	NA	314	Too-Many
TCGA.CA.5256	13	19212261	115106995	33244	0.0188	NEUTRAL	NA	314	Too-Many
TCGA.CA.5796	13	19212261	115106995	33425	-0.0254	NEUTRAL	NA	314	Too-Many
TCGA.CA.5797	13	19212261	115106995	33451	-0.3887	NEUTRAL	NA	314	Too-Many
TCGA.CA.6716	13	19212261	115106995	33393	0.0174	NEUTRAL	NA	314	Too-Many
TCGA.CA.6717	13	19212261	115106995	33322	0.0084	NEUTRAL	NA	314	Too-Many
TCGA.CA.6718	13	19212261	115106995	33356	-0.0058	NEUTRAL	NA	314	Too-Many
TCGA.CA.6719	13	19212261	115106995	33359	0.2725	NEUTRAL	NA	314	Too-Many
TCGA.CI.6619	13	19212261	115106995	33401	0.3394	NEUTRAL	NA	314	Too-Many
TCGA.CI.6620	13	19212261	115106995	33382	-0.0044	NEUTRAL	NA	314	Too-Many
TCGA.CI.6621	13	19212261	115106995	33394	0.1563	NEUTRAL	NA	314	Too-Many
TCGA.CK.4950	13	19212261	115106995	33199	0.003	NEUTRAL	NA	314	Too-Many
TCGA.CK.4951	13	19212261	115106995	33319	-0.0038	NEUTRAL	NA	314	Too-Many
TCGA.CK.5913	13	19212261	115106995	33433	-0.0095	NEUTRAL	NA	314	Too-Many
TCGA.CK.5916	13	19212261	115106995	33425	0.0018	NEUTRAL	NA	314	Too-Many
TCGA.CK.6746	13	19212261	115106995	33373	-0.0018	NEUTRAL	NA	314	Too-Many
TCGA.CK.6747	13	19212261	115106995	33327	0.0279	NEUTRAL	NA	314	Too-Many
TCGA.CK.6751	13	19212261	115106995	33254	-0.0111	NEUTRAL	NA	314	Too-Many
TCGA.CM.4746	13	19212261	115106995	33457	0.0531	NEUTRAL	NA	314	Too-Many
TCGA.CM.4748	13	19212261	115106995	33465	0.0088	NEUTRAL	NA	314	Too-Many
TCGA.CM.5341	13	19212261	115106995	33460	0.2105	NEUTRAL	NA	314	Too-Many
TCGA.CM.5861	13	19212261	115106995	33445	0.0007	NEUTRAL	NA	314	Too-Many
TCGA.CM.5863	13	19212261	115106995	33410	-0.0118	NEUTRAL	NA	314	Too-Many
TCGA.CM.6161	13	19212261	115106995	33420	0.3429	NEUTRAL	NA	314	Too-Many
TCGA.CM.6162	13	19212261	115106995	33344	0.0207	NEUTRAL	NA	314	Too-Many
TCGA.CM.6166	13	19212261	115106995	33483	-0.0145	NEUTRAL	NA	314	Too-Many
TCGA.CM.6167	13	19212261	115106995	33464	0.1955	NEUTRAL	NA	314	Too-Many
TCGA.CM.6168	13	19212261	115106995	33474	0.3641	NEUTRAL	NA	314	Too-Many
TCGA.CM.6171	13	19212261	115106995	33477	0.0218	NEUTRAL	NA	314	Too-Many
TCGA.CM.6674	13	19212261	115106995	33367	0.0038	NEUTRAL	NA	314	Too-Many
TCGA.CM.6676	13	19212261	115106995	33331	0.2453	NEUTRAL	NA	314	Too-Many
TCGA.CM.6677	13	19212261	115106995	33323	0.3782	NEUTRAL	NA	314	Too-Many
TCGA.CM.6680	13	19212261	115106995	33406	0.0029	NEUTRAL	NA	314	Too-Many
TCGA.D5.5537	13	19212261	115106995	33381	0	NEUTRAL	NA	314	Too-Many
TCGA.D5.6529	13	19212261	115106995	33472	0.0291	NEUTRAL	NA	314	Too-Many
TCGA.D5.6530	13	19212261	115106995	33471	0.0185	NEUTRAL	NA	314	Too-Many
TCGA.D5.6535	13	19212261	115106995	33475	0.3498	NEUTRAL	NA	314	Too-Many
TCGA.D5.6539	13	19212261	115106995	33383	0.2409	NEUTRAL	NA	314	Too-Many
TCGA.D5.6540	13	19212261	115106995	33396	-0.0126	NEUTRAL	NA	314	Too-Many
TCGA.D5.6541	13	19212261	115106995	33471	0.0667	NEUTRAL	NA	314	Too-Many
TCGA.D5.6898	13	19212261	115106995	33397	0.2928	NEUTRAL	NA	314	Too-Many
TCGA.D5.6920	13	19212261	115106995	33379	0.0025	NEUTRAL	NA	314	Too-Many
TCGA.D5.6924	13	19212261	115106995	33391	0.1936	NEUTRAL	NA	314	Too-Many
TCGA.D5.6927	13	19212261	115106995	33401	-0.0066	NEUTRAL	NA	314	Too-Many
TCGA.D5.6928	13	19212261	115106995	33395	0.0182	NEUTRAL	NA	314	Too-Many
TCGA.D5.6931	13	19212261	115106995	33377	0.2937	NEUTRAL	NA	314	Too-Many
TCGA.D5.7000	13	19212261	115106995	33308	0.3579	NEUTRAL	NA	314	Too-Many
TCGA.DC.5337	13	19212261	115106995	33338	0.0815	NEUTRAL	NA	314	Too-Many
TCGA.DC.6681	13	19212261	115106995	33393	0.0745	NEUTRAL	NA	314	Too-Many
TCGA.DM.A1D6	13	19212261	115106995	33459	0.0951	NEUTRAL	NA	314	Too-Many
TCGA.DM.A1DB	13	19212261	115106995	33456	-0.0098	NEUTRAL	NA	314	Too-Many
TCGA.DM.A288	13	19212261	115106995	33375	0.3705	NEUTRAL	NA	314	Too-Many
TCGA.DM.A28C	13	19212261	115106995	33392	0.0216	NEUTRAL	NA	314	Too-Many
TCGA.DM.A28G	13	19212261	115106995	33398	0.0416	NEUTRAL	NA	314	Too-Many
TCGA.DM.A28H	13	19212261	115106995	33401	-0.0205	NEUTRAL	NA	314	Too-Many
TCGA.EI.6506	13	19212261	115106995	33423	0.2923	NEUTRAL	NA	314	Too-Many
TCGA.EI.6507	13	19212261	115106995	33476	0.0053	NEUTRAL	NA	314	Too-Many
TCGA.EI.6511	13	19212261	115106995	33453	0.3766	NEUTRAL	NA	314	Too-Many
TCGA.EI.6882	13	19212261	115106995	33398	-0.0094	NEUTRAL	NA	314	Too-Many
TCGA.EI.6883	13	19212261	115106995	33391	0.339	NEUTRAL	NA	314	Too-Many
TCGA.EI.6917	13	19212261	115106995	33367	0.0145	NEUTRAL	NA	314	Too-Many
TCGA.F4.6463	13	19212261	115106995	33467	0.0215	NEUTRAL	NA	314	Too-Many
TCGA.F4.6569	13	19212261	115106995	33480	0.0183	NEUTRAL	NA	314	Too-Many
TCGA.F4.6703	13	19212261	115106995	33405	0.0159	NEUTRAL	NA	314	Too-Many
TCGA.F4.6704	13	19212261	115106995	33408	-0.0769	NEUTRAL	NA	314	Too-Many
TCGA.F4.6805	13	19212261	115106995	33404	-0.0052	NEUTRAL	NA	314	Too-Many
TCGA.F4.6806	13	19212261	115106995	33308	0.2034	NEUTRAL	NA	314	Too-Many
TCGA.F4.6808	13	19212261	115106995	33400	0.2731	NEUTRAL	NA	314	Too-Many
TCGA.F4.6854	13	19212261	115106995	33391	0.3718	NEUTRAL	NA	314	Too-Many
TCGA.F4.6855	13	19212261	115106995	33389	0.2896	NEUTRAL	NA	314	Too-Many
TCGA.F4.6856	13	19212261	115106995	33400	-0.0085	NEUTRAL	NA	314	Too-Many
TCGA.F5.6861	13	19212261	115106995	33384	0.0561	NEUTRAL	NA	314	Too-Many
TCGA.G4.6298	13	19212261	115106995	33471	0.3063	NEUTRAL	NA	314	Too-Many
TCGA.G4.6302	13	19212261	115106995	33472	0.0007	NEUTRAL	NA	314	Too-Many
TCGA.G4.6304	13	19212261	115106995	33393	0.012	NEUTRAL	NA	314	Too-Many
TCGA.G4.6307	13	19212261	115106995	33472	-0.0021	NEUTRAL	NA	314	Too-Many
TCGA.G4.6309	13	19212261	115106995	33398	-0.0097	NEUTRAL	NA	314	Too-Many
TCGA.G4.6315	13	19212261	115106995	33479	0.0366	NEUTRAL	NA	314	Too-Many
TCGA.G4.6317	13	19212261	115106995	33481	0.1301	NEUTRAL	NA	314	Too-Many
TCGA.G4.6321	13	19212261	115106995	33470	0.0019	NEUTRAL	NA	314	Too-Many
TCGA.G4.6323	13	19212261	115106995	33479	0.0068	NEUTRAL	NA	314	Too-Many
TCGA.G4.6588	13	19212261	115106995	33472	0.0137	NEUTRAL	NA	314	Too-Many
TCGA.G4.6625	13	19212261	115106995	33466	0.2687	NEUTRAL	NA	314	Too-Many
TCGA.G4.6628	13	19212261	115106995	33380	-0.01	NEUTRAL	NA	314	Too-Many
TCGA.NH.A50U	13	19212261	115106995	33459	0.0052	NEUTRAL	NA	314	Too-Many
TCGA.NH.A5IV	13	19212261	115106995	33402	-0.0167	NEUTRAL	NA	314	Too-Many
TCGA.NH.A6GA	13	19212261	115106995	33442	0.0474	NEUTRAL	NA	314	Too-Many
TCGA.NH.A6GC	13	19212261	115106995	33440	-0.0019	NEUTRAL	NA	314	Too-Many
TCGA.QG.A5YW	13	19212261	115106995	33268	0.2473	NEUTRAL	NA	314	Too-Many
TCGA.QG.A5Z2	13	19212261	115106995	33199	0.0137	NEUTRAL	NA	314	Too-Many
TCGA.AG.A026	13	19254915	19408094	16	0.2755	NEUTRAL	NA	0	None
TCGA.AA.3530	13	19257567	37858888	7362	0.0607	NEUTRAL	NA	95	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CRYL1,CSNK1A1L,DCLK1,EXOSC8,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SERTM1,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DM.A28F	13	19260564	19576379	54	0.2664	NEUTRAL	NA	0	None
TCGA.AU.3779	13	19260564	66064192	15963	0.2339	NEUTRAL	NA	196	Too-Many
TCGA.A6.2675	13	19311240	74601934	18621	0.256	NEUTRAL	NA	205	Too-Many
TCGA.RU.A8FL	13	19438806	19913340	181	-0.1695	NEUTRAL	NA	1	TUBA3C
TCGA.AG.A026	13	19450904	19576379	35	0.2221	NEUTRAL	NA	0	None
TCGA.AA.3844	13	19595390	19611202	10	-0.3074	NEUTRAL	NA	0	None
TCGA.DM.A28F	13	19599043	20100786	167	0.242	NEUTRAL	NA	2	"TPTE2,TUBA3C"
TCGA.AG.A01N.01A	13	19600070	20242500	38	-0.2405	NEUTRAL	NA	3	"MPHOSPH8,TPTE2,TUBA3C"
TCGA.AG.3891.01A	13	19600070	20304332	44	0.2985	NEUTRAL	NA	4	"MPHOSPH8,PSPC1,TPTE2,TUBA3C"
TCGA.AG.3906.01A	13	19600070	20315661	45	0.3488	NEUTRAL	NA	4	"MPHOSPH8,PSPC1,TPTE2,TUBA3C"
TCGA.AZ.4684.01A	13	19600070	20593660	61	0.1825	NEUTRAL	NA	6	"MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AG.A00C.01A	13	19600070	20716068	79	0.3291	NEUTRAL	NA	7	"GJA3,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AA.A01K.01A	13	19600070	21086535	85	-0.2132	NEUTRAL	NA	10	"CRYL1,GJA3,GJB2,GJB6,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AA.A010.01A	13	19600070	21237610	112	0.1106	NEUTRAL	NA	11	"CRYL1,GJA3,GJB2,GJB6,IFT88,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AA.A02F.01A	13	19600070	22246020	177	0.0994	NEUTRAL	NA	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.A01Q.01A	13	19600070	25043990	194	0.0595	NEUTRAL	NA	30	"C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PARP4,PSPC1,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AY.A54L.01A	13	19600070	25077731	303	0.2618	NEUTRAL	NA	30	"C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PARP4,PSPC1,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.A011.01A	13	19600070	27216361	441	0.0696	NEUTRAL	NA	42	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.CK.4948.01B	13	19600070	31548917	678	0.3499	NEUTRAL	NA	68	"ALOX5AP,AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,IFT88,IL17D,KATNAL1,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DM.A28M.01A	13	19600070	31548917	676	-0.1607	NEUTRAL	NA	68	"ALOX5AP,AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,IFT88,IL17D,KATNAL1,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3815.01A	13	19600070	35684898	906	-0.0357	NEUTRAL	NA	81	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.A00K.01A	13	19600070	45563742	1039	-0.0437	NEUTRAL	NA	129	Too-Many
TCGA.AG.A008.01A	13	19600070	45911456	1358	0.1222	NEUTRAL	NA	132	Too-Many
TCGA.AA.A02J.01A	13	19600070	49781216	1546	-0.0803	NEUTRAL	NA	154	Too-Many
TCGA.AH.6549.01A	13	19600070	73637892	2072	0.2493	NEUTRAL	NA	204	Too-Many
TCGA.AA.A00J.01A	13	19600070	77670407	1651	0.0188	NEUTRAL	NA	215	Too-Many
TCGA.AG.A023.01A	13	19600070	103346670	2631	0.2777	NEUTRAL	NA	262	Too-Many
TCGA.AA.A01I.01A	13	19600070	110960171	2784	0.1839	NEUTRAL	NA	280	Too-Many
TCGA.AA.A029.01A	13	19600070	111111086	2797	-0.1185	NEUTRAL	NA	280	Too-Many
TCGA.AG.A025.01A	13	19600070	111944418	2894	0.3564	NEUTRAL	NA	286	Too-Many
TCGA.AG.A01J.01A	13	19600070	113460481	2904	-8.00E-04	NEUTRAL	NA	292	Too-Many
TCGA.AA.A024.01A	13	19600070	113477612	2985	-0.0175	NEUTRAL	NA	292	Too-Many
TCGA.AA.A00Z.01A	13	19600070	113801645	57	-0.3252	NEUTRAL	NA	295	Too-Many
TCGA.AA.3980.01A	13	19600070	114757914	3334	0.088	NEUTRAL	NA	311	Too-Many
TCGA.AA.A004.01A	13	19600070	115089311	3040	0.0824	NEUTRAL	NA	314	Too-Many
TCGA.AA.A00O.01A	13	19600070	115089311	3069	0.0061	NEUTRAL	NA	314	Too-Many
TCGA.AA.A02R.01A	13	19600070	115089311	3069	-0.0886	NEUTRAL	NA	314	Too-Many
TCGA.AF.3914.01A	13	19600070	115089311	3174	0.1044	NEUTRAL	NA	314	Too-Many
TCGA.CM.4744.01A	13	19600070	115089311	3399	0.2215	NEUTRAL	NA	314	Too-Many
TCGA.CM.4750.01A	13	19600070	115089311	3401	0.3411	NEUTRAL	NA	314	Too-Many
TCGA.DM.A282.01A	13	19600070	115089311	3393	0.0011	NEUTRAL	NA	314	Too-Many
TCGA.AA.A00A.01A	13	19600942	19755840	6	-0.213	NEUTRAL	NA	1	TUBA3C
TCGA.AA.A00Q.01A	13	19600942	19755840	6	0.1541	NEUTRAL	NA	1	TUBA3C
TCGA.AG.3611.01A	13	19600942	21742135	89	0.327	NEUTRAL	NA	17	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MPHOSPH8,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZMYM2,ZMYM5"
TCGA.G4.6299	13	19602538	19738995	70	0.1663	NEUTRAL	NA	0	None
TCGA.CM.5349	13	19611202	19707908	47	0.1042	NEUTRAL	NA	0	None
TCGA.AF.6655	13	19622142	115106995	33289	0.3504	NEUTRAL	NA	314	Too-Many
TCGA.AG.A026	13	19625103	19626533	5	-0.2478	NEUTRAL	NA	0	None
TCGA.AG.A026	13	19626674	19722800	39	0.3572	NEUTRAL	NA	0	None
TCGA.AG.3728	13	19703656	19756062	37	0.317	NEUTRAL	NA	1	TUBA3C
TCGA.CM.5349	13	19721349	19745250	24	-0.3215	NEUTRAL	NA	0	None
TCGA.AA.3662	13	19723510	19759646	28	0.257	NEUTRAL	NA	1	TUBA3C
TCGA.AG.A026	13	19723510	19759646	29	-0.0361	NEUTRAL	NA	1	TUBA3C
TCGA.F4.6460	13	19724494	19745095	16	0.3072	NEUTRAL	NA	0	None
TCGA.A6.6648	13	19730551	115106995	33344	0.2597	NEUTRAL	NA	314	Too-Many
TCGA.G4.6299	13	19745250	27906256	3269	0.2839	NEUTRAL	NA	46	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.CM.5349	13	19746191	115106995	33318	0.2179	NEUTRAL	NA	314	Too-Many
TCGA.AA.3867	13	19839603	19839758	3	-0.3995	NEUTRAL	NA	0	None
TCGA.F5.6465	13	19842531	115106995	33304	0.3597	NEUTRAL	NA	313	Too-Many
TCGA.AA.3941	13	19890897	19913340	18	-0.5002	NEUTRAL	NA	0	None
TCGA.AA.3844	13	19894204	19951337	26	0.0581	NEUTRAL	NA	0	None
TCGA.AA.3850	13	19913340	34373297	5956	0.18335	NEUTRAL	NA	78	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3864	13	19926966	30344281	4225	0.0733	NEUTRAL	NA	61	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TNFRSF19,TPTE2,UBL3,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.3731	13	19948419	40242370	8197	0.0016	NEUTRAL	NA	103	Too-Many
TCGA.AA.A00A.01A	13	19997154	46357479	1081	0.0643	NEUTRAL	NA	136	Too-Many
TCGA.AA.A02K.01A	13	19997155	22255162	181	0.3141	NEUTRAL	NA	20	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3712	13	20024648	20356997	57	0.3472	NEUTRAL	NA	3	"MPHOSPH8,PSPC1,TPTE2"
TCGA.D5.6923	13	20110194	78611928	19971	0.2617	NEUTRAL	NA	217	Too-Many
TCGA.DM.A28F	13	20153515	24161030	1501	0.3512	NEUTRAL	NA	22	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,TNFRSF19,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.A01L.01A	13	20207858	20222510	4	0.1892	NEUTRAL	NA	1	MPHOSPH8
TCGA.AG.3909.01A	13	20216207	20233105	5	0.0909	NEUTRAL	NA	1	MPHOSPH8
TCGA.AA.A00N.01A	13	20233105	20325364	14	0.3613	NEUTRAL	NA	2	"MPHOSPH8,PSPC1"
TCGA.AA.3862.01A	13	20235790	103504477	2808	0.1345	NEUTRAL	NA	266	Too-Many
TCGA.AA.3861.01A	13	20237157	99520122	2560	-0.1363	NEUTRAL	NA	245	Too-Many
TCGA.AG.A01N.01A	13	20277283	20425780	15	-0.3861	NEUTRAL	NA	2	"PSPC1,ZMYM5"
TCGA.AG.3605.01A	13	20279755	113801645	65	-0.1472	NEUTRAL	NA	292	Too-Many
TCGA.AG.A01W.01A	13	20314988	20451784	8	0.1042	NEUTRAL	NA	2	"PSPC1,ZMYM5"
TCGA.CK.5914.01A	13	20346345	20567191	9	0.3698	NEUTRAL	NA	3	"PSPC1,ZMYM2,ZMYM5"
TCGA.AY.A8YK	13	20364908	25513210	2108	0.1863	NEUTRAL	NA	29	"ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MRPL57,N6AMT2,PARP4,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.A6.3808.01A	13	20412812	24860856	208	-0.1186	NEUTRAL	NA	24	"C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MRPL57,N6AMT2,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.A01W.01A	13	20517825	25491988	310	0.0651	NEUTRAL	NA	28	"ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MRPL57,N6AMT2,PARP4,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,XPO4,ZDHHC20,ZMYM2"
TCGA.AG.3906.01A	13	20567191	21553789	87	0.3251	NEUTRAL	NA	10	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,N6AMT2,XPO4,ZMYM2"
TCGA.AG.3891.01A	13	20567191	21555558	88	0.2485	NEUTRAL	NA	10	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,N6AMT2,XPO4,ZMYM2"
TCGA.AG.A01N.01A	13	20567191	110845127	2741	-0.1384	NEUTRAL	NA	274	Too-Many
TCGA.AA.A00N.01A	13	20626333	20641387	8	0.2454	NEUTRAL	NA	1	ZMYM2
TCGA.AG.3909.01A	13	20656139	20659935	4	0.2349	NEUTRAL	NA	1	ZMYM2
TCGA.AZ.4684.01A	13	20656884	21373273	52	0.3083	NEUTRAL	NA	9	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,N6AMT2,XPO4,ZMYM2"
TCGA.AA.3712	13	20658552	20769711	40	0.2833	NEUTRAL	NA	3	"GJA3,GJB2,ZMYM2"
TCGA.CK.5914.01A	13	20763000	20987370	5	-0.3238	NEUTRAL	NA	3	"CRYL1,GJB2,GJB6"
TCGA.AG.3909.01A	13	21063472	24455782	153	0.3005	NEUTRAL	NA	16	"CRYL1,FGF9,IFT88,IL17D,LATS2,MICU2,MIPEP,MRPL57,N6AMT2,SACS,SAP18,SGCG,SKA3,TNFRSF19,XPO4,ZDHHC20"
TCGA.AA.A01K.01A	13	21148470	111175975	2720	0.1275	NEUTRAL	NA	271	Too-Many
TCGA.AA.A010.01A	13	21278091	21476754	29	0.1505	NEUTRAL	NA	3	"IL17D,N6AMT2,XPO4"
TCGA.CK.5914.01A	13	21303172	21311806	3	-0.4824	NEUTRAL	NA	1	N6AMT2
TCGA.AA.A00L.01A	13	21331564	21619802	11	0.304	NEUTRAL	NA	3	"LATS2,N6AMT2,XPO4"
TCGA.AA.A00N.01A	13	21417882	21442708	4	0.2823	NEUTRAL	NA	1	XPO4
TCGA.AZ.4684.01A	13	21429739	23903492	63	0.2178	NEUTRAL	NA	10	"FGF9,LATS2,MICU2,MRPL57,SACS,SAP18,SGCG,SKA3,XPO4,ZDHHC20"
TCGA.AA.A00N.01A	13	21476754	21714988	11	-0.4583	NEUTRAL	NA	3	"LATS2,SAP18,XPO4"
TCGA.AA.3712	13	21496535	22861920	586	0.3078	NEUTRAL	NA	7	"FGF9,LATS2,MICU2,MRPL57,SAP18,SKA3,ZDHHC20"
TCGA.AG.3906.01A	13	21619802	38928308	900	0.2798	NEUTRAL	NA	84	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CSNK1A1L,DCLK1,EXOSC8,FGF9,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,POSTN,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SERTM1,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,TRPC4,UBL3,UFM1,URAD,USP12,USPL1,WASF3,ZAR1L,ZDHHC20"
TCGA.CK.5912	13	21696700	23056290	589	0.2665	NEUTRAL	NA	6	"FGF9,MICU2,MRPL57,SAP18,SKA3,ZDHHC20"
TCGA.CK.5914.01A	13	21733982	21952772	11	-0.243	NEUTRAL	NA	3	"MRPL57,SKA3,ZDHHC20"
TCGA.AA.3548	13	21777767	21800227	12	0.1452	NEUTRAL	NA	0	None
TCGA.DM.A1D0	13	21865737	26475347	2009	-0.002	NEUTRAL	NA	20	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,FGF9,MICU2,MIPEP,MTMR6,NUPL1,PABPC3,PARP4,RNF17,SACS,SGCG,SPATA13,TNFRSF19,ZDHHC20"
TCGA.G5.6641	13	21915641	23357135	642	-0.1748	NEUTRAL	NA	3	"FGF9,MICU2,ZDHHC20"
TCGA.AA.A00N.01A	13	21950703	25060267	128	-0.0425	NEUTRAL	NA	12	"C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,FGF9,MICU2,MIPEP,PARP4,SACS,SGCG,SPATA13,TNFRSF19,ZDHHC20"
TCGA.AA.A010.01A	13	21950703	25894630	229	0.261	NEUTRAL	NA	19	"AMER2,ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,FGF9,MICU2,MIPEP,MTMR6,NUPL1,PABPC3,PARP4,RNF17,SACS,SGCG,SPATA13,TNFRSF19,ZDHHC20"
TCGA.AG.3891.01A	13	21987774	28588549	336	0.2165	NEUTRAL	NA	37	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FGF9,FLT3,GPR12,GSX1,GTF3A,LNX2,MICU2,MIPEP,MTIF3,MTMR6,NUPL1,PABPC3,PARP4,PDX1,POLR1D,RASL11A,RNF17,RNF6,RPL21,SACS,SGCG,SHISA2,SPATA13,TNFRSF19,URAD,USP12,WASF3,ZDHHC20"
TCGA.AG.A01L.01A	13	22084094	22096678	4	0.1816	NEUTRAL	NA	1	MICU2
TCGA.AG.3611.01A	13	22140930	28611285	288	0.2767	NEUTRAL	NA	36	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FGF9,FLT3,GPR12,GSX1,GTF3A,LNX2,MICU2,MIPEP,MTIF3,MTMR6,NUPL1,PABPC3,PARP4,PDX1,POLR1D,RASL11A,RNF17,RNF6,RPL21,SACS,SGCG,SHISA2,SPATA13,TNFRSF19,URAD,USP12,WASF3"
TCGA.AA.3679	13	22160860	22455693	123	-0.1145	NEUTRAL	NA	2	"FGF9,MICU2"
TCGA.AA.3982	13	22321689	22724817	227	0.3128	NEUTRAL	NA	0	None
TCGA.AA.3977	13	22321689	24485861	1024	0.0267	NEUTRAL	NA	6	"C1QTNF9B,C1QTNF9B-AS1,MIPEP,SACS,SGCG,TNFRSF19"
TCGA.AF.A56N	13	22571064	23524963	427	0.2757	NEUTRAL	NA	0	None
TCGA.EI.7004	13	22620465	23366746	363	-0.0376	NEUTRAL	NA	0	None
TCGA.QG.A5YX	13	22661665	23483329	366	-0.0192	NEUTRAL	NA	0	None
TCGA.DC.6683	13	22673869	25666238	1378	0.2886	NEUTRAL	NA	12	"ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,MIPEP,PARP4,RNF17,SACS,SGCG,SPATA13,TNFRSF19"
TCGA.AA.3941	13	22726361	22763096	24	0.2508	NEUTRAL	NA	0	None
TCGA.AA.3982	13	22726361	22780736	33	-0.024	NEUTRAL	NA	0	None
TCGA.AA.3982	13	22780778	22866230	62	0.3319	NEUTRAL	NA	0	None
TCGA.AA.3712	13	22862628	24723931	868	0.0018	NEUTRAL	NA	7	"C1QTNF9B,C1QTNF9B-AS1,MIPEP,SACS,SGCG,SPATA13,TNFRSF19"
TCGA.AA.3941	13	22866523	22952101	30	0.1193	NEUTRAL	NA	0	None
TCGA.AA.3982	13	22866523	22980190	45	0.0202	NEUTRAL	NA	0	None
TCGA.AA.3982	13	22998575	23691050	285	0.2294	NEUTRAL	NA	0	None
TCGA.CK.5912	13	23341902	23868509	234	0.1399	NEUTRAL	NA	1	SGCG
TCGA.G5.6641	13	23365588	47908375	9797	0.1505	NEUTRAL	NA	124	Too-Many
TCGA.EI.7004	13	23371473	25740255	1081	-0.3826	NEUTRAL	NA	14	"AMER2,ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,MIPEP,PABPC3,PARP4,RNF17,SACS,SGCG,SPATA13,TNFRSF19"
TCGA.AA.3941	13	23372120	23375460	4	-0.4345	NEUTRAL	NA	0	None
TCGA.AA.3941	13	23556614	23568196	10	0.276	NEUTRAL	NA	0	None
TCGA.AA.3941	13	23586808	23625372	18	0.3034	NEUTRAL	NA	0	None
TCGA.AA.3982	13	23697920	27731793	1811	0.3461	NEUTRAL	NA	23	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,GPR12,MIPEP,MTMR6,NUPL1,PABPC3,PARP4,RNF17,RNF6,SACS,SGCG,SHISA2,SPATA13,TNFRSF19,USP12,WASF3"
TCGA.AA.3968	13	23699574	23989737	133	0.3537	NEUTRAL	NA	2	"SACS,SGCG"
TCGA.AG.A02X.01A	13	23777792	27690614	278	0.235	NEUTRAL	NA	23	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,GPR12,MIPEP,MTMR6,NUPL1,PABPC3,PARP4,RNF17,RNF6,SACS,SGCG,SHISA2,SPATA13,TNFRSF19,USP12,WASF3"
TCGA.AA.A00L.01A	13	23894754	23939266	18	-0.1189	NEUTRAL	NA	2	"SACS,SGCG"
TCGA.EI.6508	13	23911747	26789410	1277	-0.0091	NEUTRAL	NA	18	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CENPJ,MIPEP,MTMR6,NUPL1,PABPC3,PARP4,RNF17,RNF6,SACS,SHISA2,SPATA13,TNFRSF19"
TCGA.DC.4745	13	23981274	23982484	5	-0.1541	NEUTRAL	NA	1	SACS
TCGA.DM.A0X9	13	24027250	24044545	16	-0.1657	NEUTRAL	NA	0	None
TCGA.DM.A28F	13	24161498	24352219	96	-0.0128	NEUTRAL	NA	2	"MIPEP,TNFRSF19"
TCGA.AA.3875	13	24268220	28550577	1880	-0.0542	NEUTRAL	NA	29	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,GPR12,GSX1,GTF3A,LNX2,MIPEP,MTIF3,MTMR6,NUPL1,PABPC3,PARP4,PDX1,POLR1D,RASL11A,RNF17,RNF6,RPL21,SHISA2,SPATA13,USP12,WASF3"
TCGA.AA.3844	13	24485861	24492952	11	-0.121	NEUTRAL	NA	0	None
TCGA.AA.3977	13	24492952	30344281	2523	0.0978	NEUTRAL	NA	35	"AMER2,ATP12A,ATP8A2,C1QTNF9,CDK8,CDX2,CENPJ,FLT1,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,MTMR6,MTUS2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SHISA2,SLC46A3,SLC7A1,SPATA13,UBL3,URAD,USP12,WASF3"
TCGA.DM.A28F	13	24614313	28131502	1545	0.3218	NEUTRAL	NA	22	"AMER2,ATP12A,ATP8A2,C1QTNF9,CDK8,CENPJ,GPR12,GTF3A,LNX2,MTIF3,MTMR6,NUPL1,PABPC3,PARP4,RASL11A,RNF17,RNF6,RPL21,SHISA2,SPATA13,USP12,WASF3"
TCGA.CK.5912	13	24761446	24844855	68	0.2918	NEUTRAL	NA	1	SPATA13
TCGA.AG.3909.01A	13	24863109	24895106	9	-0.297	NEUTRAL	NA	2	"C1QTNF9,SPATA13"
TCGA.DY.A0XA	13	24925727	24963370	14	0.0507	NEUTRAL	NA	0	None
TCGA.AA.A01Q.01A	13	25049570	25285432	33	-0.303	NEUTRAL	NA	2	"ATP12A,PARP4"
TCGA.AG.3909.01A	13	25058740	25067696	5	0.1769	NEUTRAL	NA	1	PARP4
TCGA.A6.3808.01A	13	25285432	41791214	877	0.2469	NEUTRAL	NA	82	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,COG6,CSNK1A1L,DCLK1,ELF1,EXOSC8,FLT1,FLT3,FOXO1,FREM2,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KBTBD6,KBTBD7,KL,LHFP,LNX2,MAB21L1,MEDAG,MRPS31,MTIF3,MTMR6,MTRF1,MTUS2,N4BP2L1,N4BP2L2,NBEA,NHLRC3,NUPL1,PABPC3,PAN3,PDS5B,PDX1,POLR1D,POMP,POSTN,PROSER1,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SERTM1,SHISA2,SLC25A15,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPG20,STARD13,STOML3,SUPT20H,TEX26,TRPC4,UBL3,UFM1,URAD,USP12,USPL1,WASF3,WBP4,ZAR1L"
TCGA.AA.A00N.01A	13	25338290	25355970	6	-0.1554	NEUTRAL	NA	1	RNF17
TCGA.AG.A00C.01A	13	25338290	25453297	34	0.2785	NEUTRAL	NA	1	RNF17
TCGA.AA.A01Q.01A	13	25338290	99083265	1787	0.0535	NEUTRAL	NA	213	Too-Many
TCGA.AA.3712	13	25361849	26206514	308	0.0118	NEUTRAL	NA	7	"AMER2,ATP8A2,CENPJ,MTMR6,NUPL1,PABPC3,RNF17"
TCGA.CK.5914.01A	13	25436795	25744175	26	0.0819	NEUTRAL	NA	4	"AMER2,CENPJ,PABPC3,RNF17"
TCGA.AG.3909.01A	13	25451097	25458060	4	-0.0172	NEUTRAL	NA	2	"CENPJ,RNF17"
TCGA.AA.A00Q.01A	13	25457296	45563742	781	0.3536	NEUTRAL	NA	97	"AKAP11,ALG5,ALOX5AP,AMER2,ATP8A2,B3GALTL,BRCA2,CCDC122,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,COG6,CSNK1A1L,DCLK1,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,EXOSC8,FAM216B,FLT1,FLT3,FOXO1,FREM2,FRY,GPALPP1,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KBTBD6,KBTBD7,KL,LACC1,LHFP,LNX2,MAB21L1,MEDAG,MRPS31,MTIF3,MTMR6,MTRF1,MTUS2,N4BP2L1,N4BP2L2,NAA16,NBEA,NHLRC3,NUFIP1,NUPL1,PABPC3,PAN3,PDS5B,PDX1,POLR1D,POMP,POSTN,PROSER1,RASL11A,RFC3,RFXAP,RGCC,RNF6,RPL21,RXFP2,SERP2,SERTM1,SHISA2,SLC25A15,SLC46A3,SLC7A1,SMAD9,SMIM2,SOHLH2,SPG20,STARD13,STOML3,SUPT20H,TEX26,TNFSF11,TRPC4,TSC22D1,UBL3,UFM1,URAD,USP12,USPL1,VWA8,WASF3,WBP4,ZAR1L"
TCGA.AG.A00C.01A	13	25670295	27828291	106	0.336	NEUTRAL	NA	12	"AMER2,ATP8A2,CDK8,GPR12,MTMR6,NUPL1,PABPC3,RNF6,RPL21,SHISA2,USP12,WASF3"
TCGA.AG.3909.01A	13	25672705	25744175	3	0.0614	NEUTRAL	NA	1	AMER2
TCGA.AA.A00N.01A	13	25715624	26114403	42	-0.0666	NEUTRAL	NA	4	"AMER2,ATP8A2,MTMR6,NUPL1"
TCGA.EI.7004	13	25754086	27467431	720	0.0025	NEUTRAL	NA	8	"ATP8A2,CDK8,GPR12,MTMR6,NUPL1,RNF6,SHISA2,WASF3"
TCGA.AG.3909.01A	13	25839930	25875860	6	0.3025	NEUTRAL	NA	2	"MTMR6,NUPL1"
TCGA.AG.A01L.01A	13	25848157	25893385	9	0.3314	NEUTRAL	NA	2	"MTMR6,NUPL1"
TCGA.AG.3909.01A	13	25881922	25887004	3	-0.3418	NEUTRAL	NA	1	NUPL1
TCGA.AA.3833	13	25981162	27454040	631	-0.0209	NEUTRAL	NA	6	"ATP8A2,CDK8,GPR12,RNF6,SHISA2,WASF3"
TCGA.AG.3591	13	26022596	36058065	4067	0.1481	NEUTRAL	NA	45	"ALOX5AP,ATP8A2,B3GALTL,BRCA2,CDK8,CDX2,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MAB21L1,MEDAG,MTIF3,MTUS2,N4BP2L1,N4BP2L2,NBEA,PAN3,PDS5B,PDX1,POLR1D,POMP,RASL11A,RFC3,RNF6,RPL21,RXFP2,SHISA2,SLC46A3,SLC7A1,STARD13,TEX26,UBL3,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.F5.6571	13	26079626	26080760	4	-0.1044	NEUTRAL	NA	1	ATP8A2
TCGA.AA.A010.01A	13	26116040	27259773	55	0.363	NEUTRAL	NA	5	"ATP8A2,CDK8,RNF6,SHISA2,WASF3"
TCGA.AG.A01W.01A	13	26157787	27476143	46	0.2044	NEUTRAL	NA	6	"ATP8A2,CDK8,GPR12,RNF6,SHISA2,WASF3"
TCGA.AA.3712	13	26228313	26555547	141	0.3194	NEUTRAL	NA	1	ATP8A2
TCGA.AG.3883	13	26681197	26806640	65	-0.0454	NEUTRAL	NA	1	RNF6
TCGA.AG.3883	13	26816237	35709446	3680	0.311	NEUTRAL	NA	41	"ALOX5AP,B3GALTL,BRCA2,CDK8,CDX2,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MEDAG,MTIF3,MTUS2,N4BP2L1,N4BP2L2,NBEA,PAN3,PDS5B,PDX1,POLR1D,POMP,RASL11A,RFC3,RPL21,RXFP2,SLC46A3,SLC7A1,STARD13,TEX26,UBL3,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.AG.3909.01A	13	27239133	27333928	10	0.2194	NEUTRAL	NA	2	"GPR12,WASF3"
TCGA.AG.A011.01A	13	27239133	29607973	131	0.3501	NEUTRAL	NA	19	"CDX2,FLT1,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,MTUS2,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,URAD,USP12,WASF3"
TCGA.AA.3833	13	27466077	34316190	2899	-0.01	NEUTRAL	NA	36	"ALOX5AP,B3GALTL,BRCA2,CDX2,FLT1,FLT3,FRY,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MEDAG,MTIF3,MTUS2,N4BP2L1,N4BP2L2,PAN3,PDS5B,PDX1,POLR1D,POMP,RASL11A,RPL21,RXFP2,SLC46A3,SLC7A1,STARD13,TEX26,UBL3,URAD,USP12,USPL1,ZAR1L"
TCGA.EI.7004	13	27469767	28346301	394	0.286	NEUTRAL	NA	7	"GTF3A,LNX2,MTIF3,POLR1D,RASL11A,RPL21,USP12"
TCGA.CM.4743	13	27480042	115106995	30248	0.0337	NEUTRAL	NA	271	Too-Many
TCGA.AG.A01W.01A	13	27508035	27649940	13	-0.0365	NEUTRAL	NA	1	USP12
TCGA.AA.3696	13	27544633	115106995	30219	0.0062	NEUTRAL	NA	271	Too-Many
TCGA.AF.5654	13	27551702	115106995	30111	-0.0096	NEUTRAL	NA	271	Too-Many
TCGA.AA.3519	13	27608866	115106995	30143	0.2556	NEUTRAL	NA	271	Too-Many
TCGA.AA.3531	13	27619961	29506174	718	0.2852	NEUTRAL	NA	16	"CDX2,FLT1,FLT3,GSX1,GTF3A,LNX2,MTIF3,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,URAD,USP12"
TCGA.AA.3819	13	27619961	50421854	8589	-0.0128	NEUTRAL	NA	120	Too-Many
TCGA.AA.3979	13	27643134	115106995	30049	-0.0266	NEUTRAL	NA	271	Too-Many
TCGA.AA.A010.01A	13	27643398	30857712	172	0.2736	NEUTRAL	NA	20	"CDX2,FLT1,FLT3,GSX1,GTF3A,KATNAL1,LNX2,MTIF3,MTUS2,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,SLC7A1,UBL3,URAD,USP12"
TCGA.AA.3844	13	27720561	27738504	8	-0.1415	NEUTRAL	NA	1	USP12
TCGA.AA.3982	13	27732155	27738504	6	-0.4151	NEUTRAL	NA	1	USP12
TCGA.AA.3860	13	27740940	27741129	3	-0.3761	NEUTRAL	NA	1	USP12
TCGA.AG.A01W.01A	13	27760080	33295991	330	0.1491	NEUTRAL	NA	33	"ALOX5AP,B3GALTL,BRCA2,CDX2,FLT1,FLT3,FRY,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,LNX2,MEDAG,MTIF3,MTUS2,N4BP2L1,N4BP2L2,PAN3,PDS5B,PDX1,POLR1D,POMP,RASL11A,RPL21,RXFP2,SLC46A3,SLC7A1,TEX26,UBL3,URAD,USPL1,ZAR1L"
TCGA.CK.5914.01A	13	27827849	28014084	17	0.0158	NEUTRAL	NA	4	"GTF3A,MTIF3,RASL11A,RPL21"
TCGA.G4.6299	13	27910085	31465339	1541	-0.0704	NEUTRAL	NA	20	"ALOX5AP,CDX2,FLT1,FLT3,GSX1,GTF3A,HMGB1,KATNAL1,LNX2,MTIF3,MTUS2,PAN3,PDX1,POLR1D,POMP,SLC46A3,SLC7A1,UBL3,URAD,USPL1"
TCGA.AG.A00C.01A	13	28122425	29041002	83	0.2892	NEUTRAL	NA	9	"CDX2,FLT1,FLT3,GSX1,LNX2,PAN3,PDX1,POLR1D,URAD"
TCGA.AA.3982	13	28124680	28235238	37	0.0391	NEUTRAL	NA	2	"LNX2,POLR1D"
TCGA.AG.3909.01A	13	28196974	28578142	12	-0.1909	NEUTRAL	NA	6	"CDX2,FLT3,GSX1,PDX1,POLR1D,URAD"
TCGA.AA.3844	13	28208422	28219718	10	-0.0733	NEUTRAL	NA	1	POLR1D
TCGA.AA.3982	13	28236651	28460657	109	0.3665	NEUTRAL	NA	2	"GSX1,POLR1D"
TCGA.AA.3875	13	28555259	38292499	3925	-0.3445	NEUTRAL	NA	44	"ALG5,ALOX5AP,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,FLT1,FLT3,FRY,HMGB1,HSPH1,KATNAL1,KL,MAB21L1,MEDAG,MTUS2,N4BP2L1,N4BP2L2,NBEA,PAN3,PDS5B,POMP,POSTN,RFC3,RFXAP,RXFP2,SERTM1,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPG20,STARD13,SUPT20H,TEX26,TRPC4,UBL3,URAD,USPL1,ZAR1L"
TCGA.DM.A28F	13	28562900	36728243	3316	0.3284	NEUTRAL	NA	29	"ALOX5AP,B3GALTL,BRCA2,DCLK1,FLT1,FLT3,FRY,HMGB1,HSPH1,KATNAL1,KL,MAB21L1,MEDAG,MTUS2,N4BP2L1,N4BP2L2,NBEA,PAN3,PDS5B,POMP,RFC3,RXFP2,SLC46A3,SLC7A1,STARD13,TEX26,UBL3,USPL1,ZAR1L"
TCGA.AA.A00N.01A	13	28588549	29233222	68	0.3728	NEUTRAL	NA	4	"FLT1,FLT3,PAN3,POMP"
TCGA.AG.3611.01A	13	28635957	99379004	1641	0.2743	NEUTRAL	NA	192	Too-Many
TCGA.AA.3982	13	28661612	30344281	709	0.2869	NEUTRAL	NA	8	"FLT1,FLT3,MTUS2,PAN3,POMP,SLC46A3,SLC7A1,UBL3"
TCGA.AG.3891.01A	13	28750588	28880766	18	0.0991	NEUTRAL	NA	2	"FLT1,PAN3"
TCGA.AA.3712	13	28786478	33566164	1994	-0.0332	NEUTRAL	NA	22	"ALOX5AP,B3GALTL,BRCA2,FLT1,FRY,HMGB1,HSPH1,KATNAL1,MEDAG,MTUS2,N4BP2L1,N4BP2L2,PAN3,PDS5B,POMP,RXFP2,SLC46A3,SLC7A1,TEX26,UBL3,USPL1,ZAR1L"
TCGA.AG.3891.01A	13	28882936	29291907	37	0.3741	NEUTRAL	NA	3	"FLT1,POMP,SLC46A3"
TCGA.AG.A02X.01A	13	28895548	28896915	3	-0.4189	NEUTRAL	NA	1	FLT1
TCGA.AA.3860	13	29007729	114271714	29519	0.0168	NEUTRAL	NA	249	Too-Many
TCGA.AG.3909.01A	13	29041617	29291907	12	-0.4095	NEUTRAL	NA	3	"FLT1,POMP,SLC46A3"
TCGA.DC.6157	13	29253955	29756156	168	-0.1563	NEUTRAL	NA	2	"MTUS2,SLC46A3"
TCGA.AY.A54L.01A	13	29275002	115089311	2800	0.2075	NEUTRAL	NA	256	Too-Many
TCGA.F4.6459	13	29410881	104565164	24987	0.0897	NEUTRAL	NA	210	Too-Many
TCGA.AA.3531	13	29529499	43163640	5329	0.2364	NEUTRAL	NA	59	"AKAP11,ALG5,ALOX5AP,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,COG6,CSNK1A1L,DCLK1,DGKH,ELF1,EXOSC8,FOXO1,FREM2,FRY,HMGB1,HSPH1,KATNAL1,KBTBD6,KBTBD7,KL,LHFP,MAB21L1,MEDAG,MRPS31,MTRF1,MTUS2,N4BP2L1,N4BP2L2,NAA16,NBEA,NHLRC3,PDS5B,POSTN,PROSER1,RFC3,RFXAP,RGCC,RXFP2,SERTM1,SLC25A15,SLC7A1,SMAD9,SOHLH2,SPG20,STARD13,STOML3,SUPT20H,TEX26,TNFSF11,TRPC4,UBL3,UFM1,USPL1,VWA8,WBP4,ZAR1L"
TCGA.AA.A00N.01A	13	29598768	30815049	43	0.3017	NEUTRAL	NA	4	"KATNAL1,MTUS2,SLC7A1,UBL3"
TCGA.AG.3891.01A	13	29598768	30857712	41	0.0877	NEUTRAL	NA	4	"KATNAL1,MTUS2,SLC7A1,UBL3"
TCGA.AG.A00C.01A	13	29598768	30857712	42	0.225	NEUTRAL	NA	4	"KATNAL1,MTUS2,SLC7A1,UBL3"
TCGA.AG.A011.01A	13	29674893	36006369	318	0.0205	NEUTRAL	NA	22	"ALOX5AP,B3GALTL,BRCA2,FRY,HMGB1,HSPH1,KATNAL1,KL,MEDAG,MTUS2,N4BP2L1,N4BP2L2,NBEA,PDS5B,RFC3,RXFP2,SLC7A1,STARD13,TEX26,UBL3,USPL1,ZAR1L"
TCGA.DC.4749	13	29698636	115106995	29366	0.3318	NEUTRAL	NA	255	Too-Many
TCGA.DC.6157	13	29757565	30271527	269	0.3737	NEUTRAL	NA	2	"MTUS2,SLC7A1"
TCGA.AG.A02X.01A	13	29898703	113730253	2394	0.1948	NEUTRAL	NA	234	Too-Many
TCGA.A6.5667	13	29936513	115106995	29229	0.2925	NEUTRAL	NA	255	Too-Many
TCGA.EI.7004	13	30187008	30783451	277	0.2957	NEUTRAL	NA	2	"KATNAL1,UBL3"
TCGA.AA.3982	13	30351265	30456622	39	0.1549	NEUTRAL	NA	1	UBL3
TCGA.AA.3864	13	30351265	37850705	2918	-0.0106	NEUTRAL	NA	34	"ALG5,ALOX5AP,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,FRY,HMGB1,HSPH1,KATNAL1,KL,MAB21L1,MEDAG,N4BP2L1,N4BP2L2,NBEA,PDS5B,RFC3,RFXAP,RXFP2,SERTM1,SMAD9,SOHLH2,SPG20,STARD13,SUPT20H,TEX26,UBL3,USPL1,ZAR1L"
TCGA.AA.3977	13	30351265	37858888	2920	0.0071	NEUTRAL	NA	34	"ALG5,ALOX5AP,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,FRY,HMGB1,HSPH1,KATNAL1,KL,MAB21L1,MEDAG,N4BP2L1,N4BP2L2,NBEA,PDS5B,RFC3,RFXAP,RXFP2,SERTM1,SMAD9,SOHLH2,SPG20,STARD13,SUPT20H,TEX26,UBL3,USPL1,ZAR1L"
TCGA.AA.3982	13	30759034	30810299	21	-0.1722	NEUTRAL	NA	1	KATNAL1
TCGA.EI.7004	13	30797290	31893029	495	-0.009	NEUTRAL	NA	8	"ALOX5AP,B3GALTL,HMGB1,HSPH1,KATNAL1,MEDAG,TEX26,USPL1"
TCGA.D5.6926	13	30829945	115106995	28726	0.2712	NEUTRAL	NA	252	Too-Many
TCGA.CK.5914.01A	13	30854149	31195864	8	-0.2669	NEUTRAL	NA	3	"HMGB1,KATNAL1,USPL1"
TCGA.AA.3518	13	31096629	115106995	28650	-0.0077	NEUTRAL	NA	250	Too-Many
TCGA.AF.2693	13	31118531	32540046	636	0.3618	NEUTRAL	NA	7	"ALOX5AP,B3GALTL,HSPH1,MEDAG,RXFP2,TEX26,USPL1"
TCGA.AA.3982	13	31130893	31231960	38	0.1332	NEUTRAL	NA	1	USPL1
TCGA.AA.A010.01A	13	31195230	32363207	72	-0.0355	NEUTRAL	NA	7	"ALOX5AP,B3GALTL,HSPH1,MEDAG,RXFP2,TEX26,USPL1"
TCGA.AA.A00N.01A	13	31216723	31715227	29	-0.3048	NEUTRAL	NA	5	"ALOX5AP,HSPH1,MEDAG,TEX26,USPL1"
TCGA.CK.5914.01A	13	31491489	31548917	11	0.2628	NEUTRAL	NA	2	"MEDAG,TEX26"
TCGA.CK.5912	13	31529067	31716794	136	0.1327	NEUTRAL	NA	2	"HSPH1,TEX26"
TCGA.CM.5348	13	31578219	115106995	28450	0.3025	NEUTRAL	NA	246	Too-Many
TCGA.AG.3891.01A	13	31711143	53602920	1181	0.1784	NEUTRAL	NA	119	Too-Many
TCGA.AA.3982	13	31715554	31726177	6	-0.2975	NEUTRAL	NA	1	HSPH1
TCGA.AG.3909.01A	13	31722089	31803288	13	-0.0515	NEUTRAL	NA	2	"B3GALTL,HSPH1"
TCGA.DM.A28M.01A	13	31728721	38143382	377	-0.0063	NEUTRAL	NA	28	"ALG5,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,FRY,HSPH1,KL,MAB21L1,N4BP2L1,N4BP2L2,NBEA,PDS5B,POSTN,RFC3,RFXAP,RXFP2,SERTM1,SMAD9,SOHLH2,SPG20,STARD13,SUPT20H,ZAR1L"
TCGA.CK.4948.01B	13	31728721	101143817	2020	0.2937	NEUTRAL	NA	187	Too-Many
TCGA.AA.3982	13	31733944	31763866	10	0.3059	NEUTRAL	NA	1	HSPH1
TCGA.AA.3982	13	31812246	31906140	26	-0.0888	NEUTRAL	NA	1	B3GALTL
TCGA.AG.A00C.01A	13	31843281	36006369	227	0.2113	NEUTRAL	NA	12	"B3GALTL,BRCA2,FRY,KL,N4BP2L1,N4BP2L2,NBEA,PDS5B,RFC3,RXFP2,STARD13,ZAR1L"
TCGA.EI.7004	13	31905448	32389331	195	-0.4206	NEUTRAL	NA	2	"B3GALTL,RXFP2"
TCGA.AA.3982	13	31911821	32011165	41	0.3493	NEUTRAL	NA	0	None
TCGA.AA.3844	13	31989434	32083269	40	0.2227	NEUTRAL	NA	0	None
TCGA.AA.3982	13	32011356	32108712	39	-0.0912	NEUTRAL	NA	0	None
TCGA.AA.3844	13	32086119	32143319	22	-0.1925	NEUTRAL	NA	0	None
TCGA.AA.3968	13	32112347	33221201	363	0.0212	NEUTRAL	NA	7	"BRCA2,FRY,N4BP2L1,N4BP2L2,PDS5B,RXFP2,ZAR1L"
TCGA.AA.3982	13	32143319	34376914	896	0.2245	NEUTRAL	NA	9	"BRCA2,FRY,KL,N4BP2L1,N4BP2L2,PDS5B,RXFP2,STARD13,ZAR1L"
TCGA.AA.3844	13	32145296	35473955	1311	0.3292	NEUTRAL	NA	10	"BRCA2,FRY,KL,N4BP2L1,N4BP2L2,PDS5B,RFC3,RXFP2,STARD13,ZAR1L"
TCGA.AA.A00D.01A	13	32313716	32869327	21	0.2801	NEUTRAL	NA	2	"FRY,RXFP2"
TCGA.EI.7004	13	32392751	33169696	246	-0.005	NEUTRAL	NA	6	"BRCA2,FRY,N4BP2L1,N4BP2L2,PDS5B,ZAR1L"
TCGA.AG.4021	13	32504938	76070770	13956	-0.09	NEUTRAL	NA	135	Too-Many
TCGA.AA.A010.01A	13	32729617	32753765	9	-0.2282	NEUTRAL	NA	1	FRY
TCGA.AG.3909.01A	13	32863732	32906362	11	0.0891	NEUTRAL	NA	3	"BRCA2,FRY,ZAR1L"
TCGA.CK.5914.01A	13	32877964	32920899	17	0.3594	NEUTRAL	NA	2	"BRCA2,ZAR1L"
TCGA.AA.A010.01A	13	32944491	33252923	32	-0.169	NEUTRAL	NA	4	"BRCA2,N4BP2L1,N4BP2L2,PDS5B"
TCGA.AG.3909.01A	13	32968812	32981805	8	0.1201	NEUTRAL	NA	2	"BRCA2,N4BP2L1"
TCGA.AA.A00D.01A	13	33091922	36445329	57	0.2733	NEUTRAL	NA	8	"DCLK1,KL,MAB21L1,N4BP2L2,NBEA,PDS5B,RFC3,STARD13"
TCGA.EI.7004	13	33174224	84323544	16400	-0.3727	NEUTRAL	NA	147	Too-Many
TCGA.AG.3909.01A	13	33270939	33320068	10	0.1074	NEUTRAL	NA	1	PDS5B
TCGA.AA.A010.01A	13	33320068	33629167	14	-0.2692	NEUTRAL	NA	2	"KL,PDS5B"
TCGA.AA.A02K.01A	13	33344752	33590542	4	0.2196	NEUTRAL	NA	1	PDS5B
TCGA.G4.6295	13	33414171	57749718	8086	0.3231	NEUTRAL	NA	115	Too-Many
TCGA.AA.3712	13	33566221	115106995	27723	0.3088	NEUTRAL	NA	237	Too-Many
TCGA.AA.3968	13	33728831	35709446	759	0.2405	NEUTRAL	NA	3	"NBEA,RFC3,STARD13"
TCGA.AA.3941	13	33746528	33754515	8	-0.1875	NEUTRAL	NA	1	STARD13
TCGA.AA.3680	13	33783620	115106995	27594	-0.0109	NEUTRAL	NA	236	Too-Many
TCGA.AA.3811	13	33856613	94934929	19267	0.1551	NEUTRAL	NA	150	Too-Many
TCGA.AF.2693	13	33901160	36651791	1013	-0.0134	NEUTRAL	NA	5	"DCLK1,MAB21L1,NBEA,RFC3,STARD13"
TCGA.G4.6626	13	34150827	35905593	612	0.3062	NEUTRAL	NA	3	"NBEA,RFC3,STARD13"
TCGA.AF.A56N	13	34193250	34198436	3	-0.4904	NEUTRAL	NA	1	STARD13
TCGA.AA.3681	13	34317470	34318208	3	-0.4382	NEUTRAL	NA	0	None
TCGA.AA.3833	13	34318604	115106995	27384	0.0082	NEUTRAL	NA	235	Too-Many
TCGA.AA.3850	13	34374838	39901621	2084	-0.40365	NEUTRAL	NA	23	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,FREM2,MAB21L1,NBEA,NHLRC3,POSTN,PROSER1,RFC3,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,STOML3,SUPT20H,TRPC4,UFM1"
TCGA.AA.3982	13	34377266	39901621	2077	-0.0866	NEUTRAL	NA	23	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,FREM2,MAB21L1,NBEA,NHLRC3,POSTN,PROSER1,RFC3,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,STOML3,SUPT20H,TRPC4,UFM1"
TCGA.AA.A02K.01A	13	34392263	99087793	1627	-6.00E-04	NEUTRAL	NA	165	Too-Many
TCGA.AG.3909.01A	13	34395220	35619044	12	0.3392	NEUTRAL	NA	2	"NBEA,RFC3"
TCGA.AA.3930.01A	13	34397990	36244987	68	0.2015	NEUTRAL	NA	3	"MAB21L1,NBEA,RFC3"
TCGA.AF.A56N	13	34587421	34653330	25	0.1912	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	13	34589530	34629169	7	-0.1432	NEUTRAL	NA	0	None
TCGA.A6.2678	13	34658644	50520855	5651	0.0773	NEUTRAL	NA	84	"AKAP11,ALG5,ARL11,CAB39L,CCDC122,CCDC169,CCDC169-SOHLH2,CCNA1,CDADC1,COG3,COG6,CPB2,CSNK1A1L,CYSLTR2,DCLK1,DGKH,DNAJC15,EBPL,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,EXOSC8,FAM216B,FNDC3A,FOXO1,FREM2,GPALPP1,GTF2F2,HTR2A,ITM2B,KBTBD6,KBTBD7,KCTD4,KIAA0226L,KPNA3,LACC1,LCP1,LHFP,LPAR6,LRCH1,LRRC63,MAB21L1,MED4,MLNR,MRPS31,MTRF1,NAA16,NBEA,NHLRC3,NUDT15,NUFIP1,PHF11,POSTN,PROSER1,RB1,RCBTB1,RCBTB2,RFXAP,RGCC,SERP2,SERTM1,SETDB2,SIAH3,SLC25A15,SLC25A30,SMAD9,SMIM2,SOHLH2,SPERT,SPG20,SPRYD7,STOML3,SUCLA2,SUPT20H,TNFSF11,TPT1,TRPC4,TSC22D1,UFM1,VWA8,WBP4,ZC3H13"
TCGA.AF.A56N	13	34743713	115106995	27100	0.2878	NEUTRAL	NA	234	Too-Many
TCGA.AA.3941	13	34867289	35930743	291	0.3439	NEUTRAL	NA	1	NBEA
TCGA.RU.A8FL	13	34896430	38523095	1348	-0.0693	NEUTRAL	NA	17	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,MAB21L1,NBEA,POSTN,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H,TRPC4"
TCGA.AG.A01W.01A	13	35022568	39132897	217	0.2469	NEUTRAL	NA	18	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,MAB21L1,NBEA,POSTN,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H,TRPC4,UFM1"
TCGA.CK.4952.01A	13	35118344	114107413	2441	-0.1119	NEUTRAL	NA	222	Too-Many
TCGA.AA.3844	13	35474136	36172281	141	-0.0825	NEUTRAL	NA	2	"MAB21L1,NBEA"
TCGA.AA.A010.01A	13	35615063	35926267	36	-0.4047	NEUTRAL	NA	1	NBEA
TCGA.AA.3815.01A	13	35697569	113798146	2286	-0.0673	NEUTRAL	NA	215	Too-Many
TCGA.AA.3968	13	35719791	64140826	8874	-0.4707	NEUTRAL	NA	116	Too-Many
TCGA.AG.3883	13	35719791	72476987	11278	-0.0109	NEUTRAL	NA	119	Too-Many
TCGA.AA.3845	13	35766255	115106995	26805	-0.0357	NEUTRAL	NA	234	Too-Many
TCGA.G4.6626	13	35927726	63679701	8740	-0.108	NEUTRAL	NA	116	Too-Many
TCGA.AA.3846	13	35929486	35967346	15	0.151	NEUTRAL	NA	1	NBEA
TCGA.AA.3941	13	35942175	36182940	81	0.0861	NEUTRAL	NA	2	"MAB21L1,NBEA"
TCGA.CK.5914.01A	13	36026202	36050714	5	-0.0685	NEUTRAL	NA	2	"MAB21L1,NBEA"
TCGA.AG.A011.01A	13	36026202	36140995	8	-0.3921	NEUTRAL	NA	2	"MAB21L1,NBEA"
TCGA.AG.3591	13	36058610	39137783	1253	-0.1958	NEUTRAL	NA	17	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,NBEA,POSTN,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H,TRPC4,UFM1"
TCGA.AA.A010.01A	13	36124577	36220344	10	0.0976	NEUTRAL	NA	1	NBEA
TCGA.AG.A00C.01A	13	36124577	36445329	33	0.1086	NEUTRAL	NA	2	"DCLK1,NBEA"
TCGA.AG.A011.01A	13	36158018	114502278	2157	0.0345	NEUTRAL	NA	227	Too-Many
TCGA.AA.3844	13	36172685	36582060	231	0.3122	NEUTRAL	NA	2	"DCLK1,NBEA"
TCGA.AA.3941	13	36214562	36220323	7	0.137	NEUTRAL	NA	1	NBEA
TCGA.CK.5914.01A	13	36225921	36244987	7	0.2248	NEUTRAL	NA	1	NBEA
TCGA.AA.3941	13	36311117	36329286	9	0.0528	NEUTRAL	NA	0	None
TCGA.F5.6702	13	36318380	91663912	17157	0.3709	NEUTRAL	NA	144	Too-Many
TCGA.AA.A010.01A	13	36348625	37578587	80	-0.1393	NEUTRAL	NA	11	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,DCLK1,EXOSC8,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20"
TCGA.AA.3941	13	36455224	36467314	11	0.0021	NEUTRAL	NA	1	DCLK1
TCGA.AA.A00N.01A	13	36521445	36900695	23	-0.1508	NEUTRAL	NA	5	"CCDC169,CCDC169-SOHLH2,DCLK1,SOHLH2,SPG20"
TCGA.AA.3844	13	36589023	36642258	15	-0.2704	NEUTRAL	NA	1	DCLK1
TCGA.AA.3941	13	36615121	36642022	6	-0.4311	NEUTRAL	NA	1	DCLK1
TCGA.AA.3844	13	36642281	37070419	140	0.3299	NEUTRAL	NA	6	"CCDC169,CCDC169-SOHLH2,CCNA1,DCLK1,SOHLH2,SPG20"
TCGA.AG.3909.01A	13	36699922	37401763	30	0.0139	NEUTRAL	NA	8	"CCDC169,CCDC169-SOHLH2,CCNA1,DCLK1,RFXAP,SERTM1,SOHLH2,SPG20"
TCGA.DM.A28F	13	36740421	38384013	639	0.3655	NEUTRAL	NA	14	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,EXOSC8,POSTN,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H,TRPC4"
TCGA.AF.2693	13	36744909	36749755	4	0.0029	NEUTRAL	NA	2	"CCDC169-SOHLH2,SOHLH2"
TCGA.AF.2693	13	36805706	38596232	682	0.1782	NEUTRAL	NA	13	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,EXOSC8,POSTN,RFXAP,SERTM1,SMAD9,SPG20,SUPT20H,TRPC4"
TCGA.AG.3594	13	36865376	46441538	3570	0.0068	NEUTRAL	NA	53	"AKAP11,ALG5,CCDC122,CCDC169,CCDC169-SOHLH2,CCNA1,COG3,COG6,CSNK1A1L,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,ERICH6B,EXOSC8,FAM216B,FOXO1,FREM2,GPALPP1,GTF2F2,KBTBD6,KBTBD7,KCTD4,LACC1,LHFP,MRPS31,MTRF1,NAA16,NHLRC3,NUFIP1,POSTN,PROSER1,RFXAP,RGCC,SERP2,SERTM1,SIAH3,SLC25A15,SLC25A30,SMAD9,SMIM2,SPERT,SPG20,STOML3,SUPT20H,TNFSF11,TPT1,TRPC4,TSC22D1,UFM1,VWA8,WBP4"
TCGA.AG.4009.01A	13	36900695	37401763	18	-0.3271	NEUTRAL	NA	4	"CCNA1,RFXAP,SERTM1,SPG20"
TCGA.AA.3844	13	37082320	37232468	79	-0.101	NEUTRAL	NA	0	None
TCGA.AA.3941	13	37119109	37335320	86	0.3741	NEUTRAL	NA	1	SERTM1
TCGA.AA.A00N.01A	13	37269179	37546067	17	0.2892	NEUTRAL	NA	4	"ALG5,RFXAP,SERTM1,SMAD9"
TCGA.AG.4009.01A	13	37422762	37618168	39	0.1746	NEUTRAL	NA	4	"ALG5,EXOSC8,SMAD9,SUPT20H"
TCGA.AG.3909.01A	13	37559712	37586302	17	-0.2354	NEUTRAL	NA	3	"ALG5,EXOSC8,SUPT20H"
TCGA.AG.3909.01A	13	37591334	37614522	13	0.3605	NEUTRAL	NA	1	SUPT20H
TCGA.AA.A010.01A	13	37607566	41345069	131	0.3002	NEUTRAL	NA	13	"COG6,CSNK1A1L,FOXO1,FREM2,LHFP,MRPS31,NHLRC3,POSTN,PROSER1,STOML3,SUPT20H,TRPC4,UFM1"
TCGA.AG.3909.01A	13	37618168	37678793	8	-0.3234	NEUTRAL	NA	2	"CSNK1A1L,SUPT20H"
TCGA.AA.A00D.01A	13	37678793	38923990	32	0.2451	NEUTRAL	NA	4	"CSNK1A1L,POSTN,TRPC4,UFM1"
TCGA.AA.3844	13	37680195	37858999	61	0.0317	NEUTRAL	NA	0	None
TCGA.AA.3496	13	37738582	39128441	581	-0.0391	NEUTRAL	NA	3	"POSTN,TRPC4,UFM1"
TCGA.AA.3941	13	37749544	39196145	607	0.099	NEUTRAL	NA	3	"POSTN,TRPC4,UFM1"
TCGA.AA.3846	13	37858999	37864797	4	-0.4448	NEUTRAL	NA	0	None
TCGA.A6.6649	13	37863208	51535020	4866	0.2604	NEUTRAL	NA	73	"AKAP11,ARL11,CAB39L,CCDC122,CDADC1,COG3,COG6,CPB2,CYSLTR2,DGKH,DLEU7,DNAJC15,EBPL,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM216B,FNDC3A,FOXO1,FREM2,GPALPP1,GTF2F2,HTR2A,ITM2B,KBTBD6,KBTBD7,KCNRG,KCTD4,KIAA0226L,KPNA3,LACC1,LCP1,LHFP,LPAR6,LRCH1,LRRC63,MED4,MLNR,MRPS31,MTRF1,NAA16,NHLRC3,NUDT15,NUFIP1,PHF11,POSTN,PROSER1,RB1,RCBTB1,RCBTB2,RGCC,RNASEH2B,SERP2,SETDB2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,SPRYD7,STOML3,SUCLA2,TNFSF11,TPT1,TRIM13,TRPC4,TSC22D1,UFM1,VWA8,WBP4,ZC3H13"
TCGA.AA.3864	13	37864917	38358631	258	-0.1261	NEUTRAL	NA	2	"POSTN,TRPC4"
TCGA.AA.3844	13	37864917	39088804	519	0.0304	NEUTRAL	NA	3	"POSTN,TRPC4,UFM1"
TCGA.AA.3530	13	37865144	115106995	26050	-0.0534	NEUTRAL	NA	219	Too-Many
TCGA.AA.3977	13	37881140	102481380	20552	-0.0587	NEUTRAL	NA	165	Too-Many
TCGA.AA.3866	13	37881140	115106995	26073	0.1906	NEUTRAL	NA	219	Too-Many
TCGA.AG.A00C.01A	13	38138590	38923990	30	0.0735	NEUTRAL	NA	3	"POSTN,TRPC4,UFM1"
TCGA.DM.A28M.01A	13	38151826	79233118	1218	-0.0432	NEUTRAL	NA	125	Too-Many
TCGA.AA.3875	13	38295579	42079409	1372	0.0348	NEUTRAL	NA	18	"COG6,ELF1,FOXO1,FREM2,KBTBD6,KBTBD7,LHFP,MRPS31,MTRF1,NAA16,NHLRC3,PROSER1,RGCC,SLC25A15,STOML3,TRPC4,UFM1,WBP4"
TCGA.AA.3846	13	38360727	38382808	18	0.065	NEUTRAL	NA	1	TRPC4
TCGA.AA.3864	13	38363216	48015334	3623	-0.014	NEUTRAL	NA	49	"AKAP11,CCDC122,COG3,COG6,CPB2,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM216B,FOXO1,FREM2,GPALPP1,GTF2F2,HTR2A,KBTBD6,KBTBD7,KCTD4,KIAA0226L,LACC1,LCP1,LHFP,LRCH1,LRRC63,MRPS31,MTRF1,NAA16,NHLRC3,NUFIP1,PROSER1,RGCC,SERP2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,STOML3,TNFSF11,TPT1,TRPC4,TSC22D1,UFM1,VWA8,WBP4,ZC3H13"
TCGA.DM.A28F	13	38403965	39317052	333	0.357	NEUTRAL	NA	3	"FREM2,TRPC4,UFM1"
TCGA.AA.3548	13	38516780	38522036	3	-0.4557	NEUTRAL	NA	0	None
TCGA.AA.3697	13	38569241	38827977	102	0.2166	NEUTRAL	NA	0	None
TCGA.AF.2693	13	38607540	39189008	220	-0.1917	NEUTRAL	NA	1	UFM1
TCGA.DM.A0XD	13	38814601	73469332	10461	-0.0002	NEUTRAL	NA	106	Too-Many
TCGA.AG.4009.01A	13	38923990	38934840	5	-0.3841	NEUTRAL	NA	1	UFM1
TCGA.RU.A8FL	13	38927887	39189008	87	-0.0262	NEUTRAL	NA	1	UFM1
TCGA.AG.3909.01A	13	38928308	39271782	10	-0.2598	NEUTRAL	NA	2	"FREM2,UFM1"
TCGA.CK.5914.01A	13	38928308	39271782	10	0.1991	NEUTRAL	NA	2	"FREM2,UFM1"
TCGA.AA.3844	13	39094287	48015334	3373	0.3708	NEUTRAL	NA	47	"AKAP11,CCDC122,COG3,COG6,CPB2,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM216B,FOXO1,FREM2,GPALPP1,GTF2F2,HTR2A,KBTBD6,KBTBD7,KCTD4,KIAA0226L,LACC1,LCP1,LHFP,LRCH1,LRRC63,MRPS31,MTRF1,NAA16,NHLRC3,NUFIP1,PROSER1,RGCC,SERP2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,STOML3,TNFSF11,TPT1,TSC22D1,VWA8,WBP4,ZC3H13"
TCGA.AG.A01W.01A	13	39137162	39166721	8	-0.2004	NEUTRAL	NA	0	None
TCGA.AG.3591	13	39141335	39207474	29	0.2116	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	13	39171602	39688904	11	0.2017	NEUTRAL	NA	4	"FREM2,NHLRC3,PROSER1,STOML3"
TCGA.AF.2693	13	39195568	40090741	402	0.3743	NEUTRAL	NA	5	"FREM2,LHFP,NHLRC3,PROSER1,STOML3"
TCGA.AG.3591	13	39210777	39272077	26	-0.3085	NEUTRAL	NA	1	FREM2
TCGA.AG.3906.01A	13	39261462	41515040	93	0.1694	NEUTRAL	NA	10	"COG6,ELF1,FOXO1,FREM2,LHFP,MRPS31,NHLRC3,PROSER1,SLC25A15,STOML3"
TCGA.AG.3591	13	39274899	39317052	24	0.0998	NEUTRAL	NA	1	FREM2
TCGA.AG.3591	13	39323405	39343821	11	-0.4224	NEUTRAL	NA	1	FREM2
TCGA.AG.A00C.01A	13	39343698	39585465	27	0.0772	NEUTRAL	NA	3	"FREM2,PROSER1,STOML3"
TCGA.AG.3591	13	39346442	39420922	31	0.3307	NEUTRAL	NA	1	FREM2
TCGA.AG.3591	13	39421415	39490460	38	-0.1308	NEUTRAL	NA	1	FREM2
TCGA.AA.A00D.01A	13	39431985	39550625	16	0.2363	NEUTRAL	NA	2	"FREM2,STOML3"
TCGA.AG.3909.01A	13	39435551	39452930	8	0.2792	NEUTRAL	NA	1	FREM2
TCGA.AG.3591	13	39494765	39529225	26	0.2473	NEUTRAL	NA	0	None
TCGA.AG.3591	13	39533010	52402177	4375	-0.1839	NEUTRAL	NA	74	"AKAP11,ARL11,CAB39L,CCDC122,CDADC1,COG3,COG6,CPB2,CYSLTR2,DGKH,DHRS12,DLEU7,DNAJC15,EBPL,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM124A,FAM216B,FNDC3A,FOXO1,GPALPP1,GTF2F2,HTR2A,INTS6,ITM2B,KBTBD6,KBTBD7,KCNRG,KCTD4,KIAA0226L,KPNA3,LACC1,LCP1,LHFP,LPAR6,LRCH1,LRRC63,MED4,MLNR,MRPS31,MTRF1,NAA16,NHLRC3,NUDT15,NUFIP1,PHF11,PROSER1,RB1,RCBTB1,RCBTB2,RGCC,RNASEH2B,SERP2,SERPINE3,SETDB2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,SPRYD7,STOML3,SUCLA2,TNFSF11,TPT1,TRIM13,TSC22D1,VWA8,WBP4,WDFY2,ZC3H13"
TCGA.AG.3909.01A	13	39596409	39598555	3	-0.1231	NEUTRAL	NA	1	PROSER1
TCGA.CK.5914.01A	13	39600367	39621773	13	-0.0934	NEUTRAL	NA	2	"NHLRC3,PROSER1"
TCGA.DM.A28F	13	39666232	39980288	141	0.2827	NEUTRAL	NA	1	LHFP
TCGA.AG.A01W.01A	13	39701356	48727948	473	0.183	NEUTRAL	NA	46	"AKAP11,CCDC122,COG3,COG6,CPB2,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM216B,FOXO1,GPALPP1,GTF2F2,HTR2A,KBTBD6,KBTBD7,KCTD4,KIAA0226L,LACC1,LCP1,LHFP,LRCH1,LRRC63,MED4,MRPS31,MTRF1,NAA16,NUDT15,NUFIP1,RGCC,SERP2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,SUCLA2,TNFSF11,TPT1,TSC22D1,VWA8,WBP4,ZC3H13"
TCGA.AA.3850	13	39911093	42140339	771	0.09465	NEUTRAL	NA	12	"COG6,ELF1,FOXO1,KBTBD6,KBTBD7,LHFP,MRPS31,MTRF1,NAA16,RGCC,SLC25A15,WBP4"
TCGA.AA.3982	13	39911093	47568155	2811	0.2084	NEUTRAL	NA	43	"AKAP11,CCDC122,COG3,COG6,CPB2,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM216B,FOXO1,GPALPP1,GTF2F2,HTR2A,KBTBD6,KBTBD7,KCTD4,KIAA0226L,LACC1,LCP1,LHFP,LRCH1,LRRC63,MRPS31,MTRF1,NAA16,NUFIP1,RGCC,SERP2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,TNFSF11,TPT1,TSC22D1,VWA8,WBP4,ZC3H13"
TCGA.AA.A00N.01A	13	39918036	40239161	7	-0.3661	NEUTRAL	NA	2	"COG6,LHFP"
TCGA.DM.A28F	13	40007198	41015301	453	0.3484	NEUTRAL	NA	2	"COG6,LHFP"
TCGA.AA.A00N.01A	13	40251555	41495571	33	0.2779	NEUTRAL	NA	4	"COG6,FOXO1,MRPS31,SLC25A15"
TCGA.AG.3731	13	40252189	41722829	489	-0.3135	NEUTRAL	NA	7	"COG6,ELF1,FOXO1,KBTBD6,MRPS31,SLC25A15,WBP4"
TCGA.AM.5820	13	40252189	110984038	23667	-0.0238	NEUTRAL	NA	177	Too-Many
TCGA.AF.2693	13	40471840	42177530	567	0.3562	NEUTRAL	NA	11	"ELF1,FOXO1,KBTBD6,KBTBD7,MRPS31,MTRF1,NAA16,RGCC,SLC25A15,VWA8,WBP4"
TCGA.DM.A28F	13	41025529	41039976	9	0.1512	NEUTRAL	NA	0	None
TCGA.DM.A28F	13	41058856	44731061	1309	0.3631	NEUTRAL	NA	21	"AKAP11,CCDC122,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,FAM216B,FOXO1,KBTBD6,KBTBD7,LACC1,MRPS31,MTRF1,NAA16,RGCC,SLC25A15,SMIM2,TNFSF11,VWA8,WBP4"
TCGA.AZ.4684.01A	13	41239713	41656812	33	0.1347	NEUTRAL	NA	5	"ELF1,FOXO1,MRPS31,SLC25A15,WBP4"
TCGA.AA.A010.01A	13	41367299	41507564	9	-0.4777	NEUTRAL	NA	2	"ELF1,SLC25A15"
TCGA.AG.4009.01A	13	41367299	41532942	15	-0.1099	NEUTRAL	NA	2	"ELF1,SLC25A15"
TCGA.AG.3909.01A	13	41495571	41646869	15	-0.3718	NEUTRAL	NA	2	"ELF1,WBP4"
TCGA.CK.5914.01A	13	41507564	41766290	19	0.11	NEUTRAL	NA	4	"ELF1,KBTBD6,KBTBD7,WBP4"
TCGA.AG.3906.01A	13	41556057	45985439	223	0.3344	NEUTRAL	NA	26	"AKAP11,CCDC122,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,FAM216B,GPALPP1,GTF2F2,KBTBD6,KBTBD7,KCTD4,LACC1,MTRF1,NAA16,NUFIP1,RGCC,SERP2,SLC25A30,SMIM2,TNFSF11,TPT1,TSC22D1,VWA8,WBP4"
TCGA.AG.3909.01A	13	41650153	42164725	42	0.3422	NEUTRAL	NA	7	"KBTBD6,KBTBD7,MTRF1,NAA16,RGCC,VWA8,WBP4"
TCGA.AG.A00C.01A	13	41704574	42439810	68	0.3208	NEUTRAL	NA	6	"KBTBD6,KBTBD7,MTRF1,NAA16,RGCC,VWA8"
TCGA.AG.3731	13	41726730	60371110	5589	0.022	NEUTRAL	NA	84	"AKAP11,ALG11,ARL11,ATP7B,CAB39L,CCDC122,CCDC70,CDADC1,CKAP2,COG3,CPB2,CYSLTR2,DGKH,DHRS12,DIAPH3,DLEU7,DNAJC15,EBPL,ENOX1,EPSTI1,ERICH6B,ESD,FAM124A,FAM216B,FNDC3A,GPALPP1,GTF2F2,HNRNPA1L2,HTR2A,INTS6,ITM2B,KBTBD7,KCNRG,KCTD4,KIAA0226L,KPNA3,LACC1,LCP1,LECT1,LPAR6,LRCH1,LRRC63,MED4,MLNR,MTRF1,NAA16,NEK3,NEK5,NUDT15,NUFIP1,OLFM4,PCDH17,PCDH8,PHF11,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RB1,RCBTB1,RCBTB2,RGCC,RNASEH2B,SERP2,SERPINE3,SETDB2,SIAH3,SLC25A30,SMIM2,SPERT,SPRYD7,SUCLA2,SUGT1,THSD1,TNFSF11,TPT1,TRIM13,TSC22D1,UTP14C,VPS36,VWA8,WDFY2,ZC3H13"
TCGA.CK.5914.01A	13	41890925	41910735	8	0.2909	NEUTRAL	NA	1	NAA16
TCGA.AA.A00N.01A	13	41910735	42032392	14	0.3202	NEUTRAL	NA	2	"NAA16,RGCC"
TCGA.5M.AAT4	13	41969552	41987445	17	-0.4725	NEUTRAL	NA	0	None
TCGA.CM.4747	13	41985001	47860279	2251	0.0103	NEUTRAL	NA	32	"AKAP11,CCDC122,COG3,CPB2,DGKH,DNAJC15,ENOX1,EPSTI1,ERICH6B,ESD,FAM216B,GPALPP1,GTF2F2,HTR2A,KCTD4,KIAA0226L,LACC1,LCP1,LRCH1,LRRC63,NUFIP1,RGCC,SERP2,SIAH3,SLC25A30,SMIM2,SPERT,TNFSF11,TPT1,TSC22D1,VWA8,ZC3H13"
TCGA.5M.AAT4	13	42018429	115106995	24501	-0.017	NEUTRAL	NA	201	Too-Many
TCGA.CK.5914.01A	13	42040919	42149825	6	0.0155	NEUTRAL	NA	2	"RGCC,VWA8"
TCGA.D5.5539	13	42043669	42234915	90	-0.356	NEUTRAL	NA	2	"RGCC,VWA8"
TCGA.AA.3875	13	42079964	115106995	24506	-0.3632	NEUTRAL	NA	200	Too-Many
TCGA.AA.3850	13	42141769	42399539	86	-0.40915	NEUTRAL	NA	1	VWA8
TCGA.AA.A010.01A	13	42263462	42461286	29	-0.0049	NEUTRAL	NA	1	VWA8
TCGA.AA.3850	13	42400078	42697806	88	0.07705	NEUTRAL	NA	2	"DGKH,VWA8"
TCGA.AG.4009.01A	13	42442431	42481670	7	-0.5081	NEUTRAL	NA	1	VWA8
TCGA.CK.5914.01A	13	42442431	42622863	10	0.1585	NEUTRAL	NA	2	"DGKH,VWA8"
TCGA.AG.A00C.01A	13	42524024	44432865	82	0.3427	NEUTRAL	NA	9	"AKAP11,CCDC122,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,TNFSF11,VWA8"
TCGA.AG.3575	13	42656840	115106995	24316	-0.0082	NEUTRAL	NA	199	Too-Many
TCGA.AA.3850	13	42703681	43202624	200	0.03255	NEUTRAL	NA	3	"AKAP11,DGKH,TNFSF11"
TCGA.AA.A010.01A	13	42763121	43180616	31	-0.4043	NEUTRAL	NA	3	"AKAP11,DGKH,TNFSF11"
TCGA.AA.3496	13	42915653	43614506	305	0.0442	NEUTRAL	NA	4	"DNAJC15,EPSTI1,FAM216B,TNFSF11"
TCGA.AA.A00D.01A	13	43174879	44443413	42	0.3126	NEUTRAL	NA	6	"CCDC122,DNAJC15,ENOX1,EPSTI1,FAM216B,TNFSF11"
TCGA.AA.3850	13	43203295	43426585	114	-0.48495	NEUTRAL	NA	1	FAM216B
TCGA.AA.3850	13	43433612	43989184	268	0.07065	NEUTRAL	NA	3	"DNAJC15,ENOX1,EPSTI1"
TCGA.AG.3909.01A	13	43986000	45149837	20	-0.4256	NEUTRAL	NA	6	"CCDC122,ENOX1,LACC1,SERP2,SMIM2,TSC22D1"
TCGA.CK.5914.01A	13	43986938	45149837	21	0.2344	NEUTRAL	NA	6	"CCDC122,ENOX1,LACC1,SERP2,SMIM2,TSC22D1"
TCGA.AA.3850	13	43996673	44441833	198	-0.31145	NEUTRAL	NA	2	"CCDC122,ENOX1"
TCGA.AA.3850	13	44450221	44739928	93	-0.16425	NEUTRAL	NA	3	"CCDC122,LACC1,SMIM2"
TCGA.F5.6864	13	44478192	56717668	3586	-0.0152	NEUTRAL	NA	63	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,COG3,CPB2,CYSLTR2,DHRS12,DLEU7,EBPL,ERICH6B,ESD,FAM124A,FNDC3A,GPALPP1,GTF2F2,HNRNPA1L2,HTR2A,INTS6,ITM2B,KCNRG,KCTD4,KIAA0226L,KPNA3,LCP1,LECT1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NEK3,NEK5,NUDT15,NUFIP1,OLFM4,PCDH8,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERP2,SERPINE3,SETDB2,SIAH3,SLC25A30,SMIM2,SPERT,SPRYD7,SUCLA2,SUGT1,THSD1,TPT1,TRIM13,TSC22D1,UTP14C,VPS36,WDFY2,ZC3H13"
TCGA.AA.3664	13	44519490	44538412	10	0.1407	NEUTRAL	NA	0	None
TCGA.AA.3850	13	44742425	47486936	957	0.15945	NEUTRAL	NA	20	"COG3,CPB2,ERICH6B,ESD,GPALPP1,GTF2F2,HTR2A,KCTD4,KIAA0226L,LCP1,LRCH1,LRRC63,NUFIP1,SERP2,SIAH3,SLC25A30,SPERT,TPT1,TSC22D1,ZC3H13"
TCGA.DM.A28F	13	44751611	48078168	1210	0.352	NEUTRAL	NA	20	"COG3,CPB2,ERICH6B,ESD,GPALPP1,GTF2F2,HTR2A,KCTD4,KIAA0226L,LCP1,LRCH1,LRRC63,NUFIP1,SERP2,SIAH3,SLC25A30,SPERT,TPT1,TSC22D1,ZC3H13"
TCGA.AG.4009.01A	13	44953717	45149837	7	-0.3688	NEUTRAL	NA	2	"SERP2,TSC22D1"
TCGA.AA.3848	13	45474981	115106995	23148	0.0656	NEUTRAL	NA	187	Too-Many
TCGA.AG.A00C.01A	13	45515299	45857560	26	0.3399	NEUTRAL	NA	4	"GPALPP1,GTF2F2,KCTD4,NUFIP1"
TCGA.AA.A010.01A	13	45515299	46039124	46	0.3645	NEUTRAL	NA	7	"COG3,GPALPP1,GTF2F2,KCTD4,NUFIP1,SLC25A30,TPT1"
TCGA.RU.A8FL	13	45724052	48337636	1004	-0.0471	NEUTRAL	NA	16	"COG3,CPB2,ERICH6B,ESD,GTF2F2,HTR2A,KCTD4,KIAA0226L,LCP1,LRCH1,LRRC63,SIAH3,SLC25A30,SPERT,TPT1,ZC3H13"
TCGA.CK.5914.01A	13	45911456	46077329	32	-0.0067	NEUTRAL	NA	3	"COG3,SLC25A30,TPT1"
TCGA.AA.A00Q.01A	13	45911456	47297304	115	0.2731	NEUTRAL	NA	12	"COG3,CPB2,ERICH6B,KIAA0226L,LCP1,LRCH1,LRRC63,SIAH3,SLC25A30,SPERT,TPT1,ZC3H13"
TCGA.AG.4009.01A	13	45964842	46039124	12	0.3631	NEUTRAL	NA	2	"COG3,SLC25A30"
TCGA.AG.4009.01A	13	46050299	46070250	12	-0.4466	NEUTRAL	NA	1	COG3
TCGA.A6.3808.01A	13	46056495	101756599	1279	0.268	NEUTRAL	NA	125	Too-Many
TCGA.AA.A00K.01A	13	46065508	49951049	215	-0.1713	NEUTRAL	NA	24	"CAB39L,CDADC1,COG3,CPB2,CYSLTR2,ERICH6B,ESD,FNDC3A,HTR2A,ITM2B,KIAA0226L,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NUDT15,RB1,RCBTB2,SIAH3,SPERT,SUCLA2,ZC3H13"
TCGA.AG.A00C.01A	13	46077329	46722443	51	0.3121	NEUTRAL	NA	7	"COG3,CPB2,ERICH6B,LCP1,SIAH3,SPERT,ZC3H13"
TCGA.AG.3906.01A	13	46077329	52606399	360	0.308	NEUTRAL	NA	44	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,COG3,CPB2,CYSLTR2,DHRS12,DLEU7,EBPL,ERICH6B,ESD,FAM124A,FNDC3A,HTR2A,INTS6,ITM2B,KCNRG,KIAA0226L,KPNA3,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NUDT15,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SIAH3,SPERT,SPRYD7,SUCLA2,TRIM13,UTP14C,WDFY2,ZC3H13"
TCGA.AA.A00N.01A	13	46083780	46287305	25	0.0953	NEUTRAL	NA	3	"COG3,ERICH6B,SPERT"
TCGA.AG.A008.01A	13	46092854	103382553	1272	0.0956	NEUTRAL	NA	130	Too-Many
TCGA.F4.6461	13	46154515	47809994	692	-0.4582	NEUTRAL	NA	11	"CPB2,ERICH6B,ESD,HTR2A,KIAA0226L,LCP1,LRCH1,LRRC63,SIAH3,SPERT,ZC3H13"
TCGA.CK.5914.01A	13	46276464	46277601	3	-0.0626	NEUTRAL	NA	1	SPERT
TCGA.G4.6311	13	46415074	98527273	15816	0.2136	NEUTRAL	NA	105	Too-Many
TCGA.AA.A010.01A	13	46531231	46594536	16	-0.2914	NEUTRAL	NA	1	ZC3H13
TCGA.AA.A00A.01A	13	46537915	46616245	15	-0.3776	NEUTRAL	NA	1	ZC3H13
TCGA.AA.A00D.01A	13	46539367	46616245	14	0.0259	NEUTRAL	NA	1	ZC3H13
TCGA.AZ.4315	13	46591988	115106995	22788	-0.002	NEUTRAL	NA	177	Too-Many
TCGA.AA.A00N.01A	13	46594536	46722443	23	-0.0085	NEUTRAL	NA	3	"CPB2,LCP1,ZC3H13"
TCGA.CK.5914.01A	13	46619052	46661841	12	0.056	NEUTRAL	NA	2	"CPB2,ZC3H13"
TCGA.AA.A00A.01A	13	46619052	53001091	336	0.0718	NEUTRAL	NA	44	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CPB2,CYSLTR2,DHRS12,DLEU7,EBPL,ESD,FAM124A,FNDC3A,HTR2A,INTS6,ITM2B,KCNRG,KIAA0226L,KPNA3,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NEK3,NEK5,NUDT15,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUCLA2,THSD1,TRIM13,UTP14C,VPS36,WDFY2,ZC3H13"
TCGA.CK.5914.01A	13	46716390	46787111	13	0.1246	NEUTRAL	NA	2	"LCP1,LRRC63"
TCGA.AA.A00N.01A	13	46801661	46820620	4	-0.1656	NEUTRAL	NA	1	LRRC63
TCGA.AG.A00C.01A	13	46801661	46935549	9	0.1457	NEUTRAL	NA	2	"KIAA0226L,LRRC63"
TCGA.AF.2693	13	46859943	46922580	29	0.3092	NEUTRAL	NA	1	KIAA0226L
TCGA.DM.A1D8	13	46919150	88311499	12286	0.0774	NEUTRAL	NA	84	"ALG11,ARL11,ATP7B,BORA,CAB39L,CCDC70,CDADC1,CKAP2,CLN5,COMMD6,CYSLTR2,DACH1,DHRS12,DIAPH3,DIS3,DLEU7,EBPL,EDNRB,ESD,FAM124A,FBXL3,FNDC3A,HNRNPA1L2,HTR2A,INTS6,IRG1,ITM2B,KCNRG,KCTD12,KIAA0226L,KLF12,KLF5,KLHL1,KPNA3,LECT1,LMO7,LMO7DN,LPAR6,LRCH1,MED4,MLNR,MYCBP2,MZT1,NDFIP2,NEK3,NEK5,NUDT15,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PHF11,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RB1,RBM26,RCBTB1,RCBTB2,RNASEH2B,RNF219,SCEL,SERPINE3,SETDB2,SLAIN1,SLITRK1,SLITRK6,SPRY2,SPRYD7,SUCLA2,SUGT1,TBC1D4,TDRD3,THSD1,TRIM13,UCHL3,UTP14C,VPS36,WDFY2"
TCGA.AF.2693	13	46928783	46950331	9	-0.4981	NEUTRAL	NA	1	KIAA0226L
TCGA.AA.A00N.01A	13	46933584	47224299	10	-0.2369	NEUTRAL	NA	2	"KIAA0226L,LRCH1"
TCGA.AF.2693	13	46957552	47083757	17	0.2366	NEUTRAL	NA	1	KIAA0226L
TCGA.DC.6683	13	47201607	109721967	20532	0.2918	NEUTRAL	NA	135	Too-Many
TCGA.AG.A00C.01A	13	47224299	48542683	33	0.229	NEUTRAL	NA	4	"ESD,HTR2A,LRCH1,SUCLA2"
TCGA.AA.A010.01A	13	47260018	47408924	25	-0.2929	NEUTRAL	NA	3	"ESD,HTR2A,LRCH1"
TCGA.AA.A00Q.01A	13	47302944	49705226	85	-0.0938	NEUTRAL	NA	12	"CYSLTR2,ESD,FNDC3A,HTR2A,ITM2B,LPAR6,LRCH1,MED4,NUDT15,RB1,RCBTB2,SUCLA2"
TCGA.AA.A00N.01A	13	47345505	47351542	3	0.0802	NEUTRAL	NA	1	ESD
TCGA.AA.A00N.01A	13	47354040	48923044	42	-0.3038	NEUTRAL	NA	7	"ESD,HTR2A,ITM2B,MED4,NUDT15,RB1,SUCLA2"
TCGA.AF.2693	13	47398351	47573615	99	0.0781	NEUTRAL	NA	1	HTR2A
TCGA.AA.3941	13	47561104	48274370	316	0.1796	NEUTRAL	NA	0	None
TCGA.AA.3982	13	47569000	48275411	315	-0.1359	NEUTRAL	NA	0	None
TCGA.AF.2693	13	47574725	47834215	123	-0.4981	NEUTRAL	NA	0	None
TCGA.AY.6196	13	47603959	73843868	7277	-0.4035	NEUTRAL	NA	59	"ALG11,ARL11,ATP7B,BORA,CAB39L,CCDC70,CDADC1,CKAP2,CYSLTR2,DACH1,DHRS12,DIAPH3,DIS3,DLEU7,EBPL,FAM124A,FNDC3A,HNRNPA1L2,INTS6,ITM2B,KCNRG,KLF5,KLHL1,KPNA3,LECT1,LPAR6,MED4,MLNR,MZT1,NEK3,NEK5,NUDT15,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PHF11,PIBF1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUCLA2,SUGT1,TDRD3,THSD1,TRIM13,UTP14C,VPS36,WDFY2"
TCGA.F4.6461	13	47810393	52762668	1393	0.0035	NEUTRAL	NA	34	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CYSLTR2,DHRS12,DLEU7,EBPL,FAM124A,FNDC3A,INTS6,ITM2B,KCNRG,KPNA3,LPAR6,MED4,MLNR,NEK3,NEK5,NUDT15,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUCLA2,TRIM13,UTP14C,WDFY2"
TCGA.CM.4747	13	47862886	115106995	22266	0.3423	NEUTRAL	NA	169	Too-Many
TCGA.AF.2693	13	47863040	47906088	20	-0.331	NEUTRAL	NA	0	None
TCGA.AA.3864	13	48033887	115106995	22142	-0.0671	NEUTRAL	NA	169	Too-Many
TCGA.AA.3850	13	48274370	49256703	258	0.15385	NEUTRAL	NA	8	"CYSLTR2,ITM2B,LPAR6,MED4,NUDT15,RB1,RCBTB2,SUCLA2"
TCGA.AA.3982	13	48284031	49471046	333	0.2181	NEUTRAL	NA	8	"CYSLTR2,ITM2B,LPAR6,MED4,NUDT15,RB1,RCBTB2,SUCLA2"
TCGA.F5.6814	13	48467866	115106995	21982	-0.0658	NEUTRAL	NA	169	Too-Many
TCGA.AF.2693	13	48607045	48647826	10	0.3747	NEUTRAL	NA	1	NUDT15
TCGA.CK.5914.01A	13	48615019	48667616	9	0.0812	NEUTRAL	NA	2	"MED4,NUDT15"
TCGA.AA.A010.01A	13	48667616	48953717	21	-0.2478	NEUTRAL	NA	3	"ITM2B,MED4,RB1"
TCGA.AA.3496	13	48674134	50189998	388	-0.0596	NEUTRAL	NA	12	"CAB39L,CDADC1,CYSLTR2,FNDC3A,ITM2B,LPAR6,MLNR,PHF11,RB1,RCBTB1,RCBTB2,SETDB2"
TCGA.AG.A01W.01A	13	48731437	50816362	114	0.004	NEUTRAL	NA	18	"ARL11,CAB39L,CDADC1,CYSLTR2,EBPL,FNDC3A,ITM2B,KCNRG,KPNA3,LPAR6,MLNR,PHF11,RB1,RCBTB1,RCBTB2,SETDB2,SPRYD7,TRIM13"
TCGA.AG.A00C.01A	13	48919164	50050595	87	0.3279	NEUTRAL	NA	9	"CAB39L,CDADC1,CYSLTR2,FNDC3A,LPAR6,MLNR,RB1,RCBTB2,SETDB2"
TCGA.AA.A00N.01A	13	49027100	49054089	10	-0.4351	NEUTRAL	NA	1	RB1
TCGA.CK.5914.01A	13	49027100	49095954	22	0.3111	NEUTRAL	NA	2	"RB1,RCBTB2"
TCGA.AA.A010.01A	13	49095954	49765124	22	-0.128	NEUTRAL	NA	3	"CYSLTR2,FNDC3A,RCBTB2"
TCGA.AA.3850	13	49258468	49493647	95	-0.38265	NEUTRAL	NA	1	CYSLTR2
TCGA.CK.5915	13	49413467	115106995	21755	-0.2433	NEUTRAL	NA	161	Too-Many
TCGA.AA.3941	13	49435503	49439180	9	-0.4762	NEUTRAL	NA	0	None
TCGA.AA.3982	13	49479228	53924430	1131	0.2408	NEUTRAL	NA	34	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,DHRS12,DLEU7,EBPL,FAM124A,FNDC3A,HNRNPA1L2,INTS6,KCNRG,KPNA3,LECT1,MLNR,NEK3,NEK5,OLFM4,PCDH8,PHF11,RCBTB1,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUGT1,THSD1,TRIM13,UTP14C,VPS36,WDFY2"
TCGA.AA.3850	13	49495711	53651273	1043	0.13285	NEUTRAL	NA	34	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,DHRS12,DLEU7,EBPL,FAM124A,FNDC3A,HNRNPA1L2,INTS6,KCNRG,KPNA3,LECT1,MLNR,NEK3,NEK5,OLFM4,PCDH8,PHF11,RCBTB1,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUGT1,THSD1,TRIM13,UTP14C,VPS36,WDFY2"
TCGA.AA.A010.01A	13	49794432	50265361	63	0.1065	NEUTRAL	NA	8	"ARL11,CAB39L,CDADC1,EBPL,MLNR,PHF11,RCBTB1,SETDB2"
TCGA.AA.A02J.01A	13	49822954	115089311	1492	-0.0857	NEUTRAL	NA	159	Too-Many
TCGA.CK.5914.01A	13	49933802	50096111	22	-0.0232	NEUTRAL	NA	3	"CAB39L,PHF11,SETDB2"
TCGA.AA.A00K.01A	13	50025936	50505107	57	0.2317	NEUTRAL	NA	7	"ARL11,EBPL,KPNA3,PHF11,RCBTB1,SETDB2,SPRYD7"
TCGA.AA.A01C.01A	13	50064936	51501518	53	-0.0588	NEUTRAL	NA	11	"ARL11,DLEU7,EBPL,KCNRG,KPNA3,PHF11,RCBTB1,RNASEH2B,SETDB2,SPRYD7,TRIM13"
TCGA.AA.A00N.01A	13	50092107	51503584	59	-0.4287	NEUTRAL	NA	10	"ARL11,DLEU7,EBPL,KCNRG,KPNA3,PHF11,RCBTB1,RNASEH2B,SPRYD7,TRIM13"
TCGA.AG.A00C.01A	13	50097276	52548822	123	0.3289	NEUTRAL	NA	17	"ARL11,ATP7B,CCDC70,DHRS12,DLEU7,EBPL,FAM124A,INTS6,KCNRG,KPNA3,PHF11,RCBTB1,RNASEH2B,SERPINE3,SPRYD7,TRIM13,WDFY2"
TCGA.AA.A010.01A	13	50293832	51819399	44	-0.1087	NEUTRAL	NA	7	"DLEU7,FAM124A,KCNRG,KPNA3,RNASEH2B,SPRYD7,TRIM13"
TCGA.AA.A00Q.01A	13	50307076	52373622	74	0.2491	NEUTRAL	NA	11	"DHRS12,DLEU7,FAM124A,INTS6,KCNRG,KPNA3,RNASEH2B,SERPINE3,SPRYD7,TRIM13,WDFY2"
TCGA.AA.A00K.01A	13	50586054	52330421	58	-0.1581	NEUTRAL	NA	8	"DLEU7,FAM124A,INTS6,KCNRG,RNASEH2B,SERPINE3,TRIM13,WDFY2"
TCGA.AA.3819	13	50634665	115106995	21546	-0.0214	NEUTRAL	NA	148	Too-Many
TCGA.AA.3973	13	50799671	50818762	3	-0.2735	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	13	50819124	51483353	63	0.2291	NEUTRAL	NA	1	DLEU7
TCGA.CK.5912	13	50895364	51438801	214	0.2929	NEUTRAL	NA	1	DLEU7
TCGA.AG.A01W.01A	13	51484488	53784056	90	-0.1499	NEUTRAL	NA	20	"ALG11,ATP7B,CCDC70,CKAP2,DHRS12,FAM124A,HNRNPA1L2,INTS6,LECT1,NEK3,NEK5,OLFM4,PCDH8,RNASEH2B,SERPINE3,SUGT1,THSD1,UTP14C,VPS36,WDFY2"
TCGA.AA.A00D.01A	13	51590254	51969389	27	0.2354	NEUTRAL	NA	3	"FAM124A,INTS6,SERPINE3"
TCGA.AA.3941	13	51754948	51768775	7	-0.0918	NEUTRAL	NA	0	None
TCGA.AA.3941	13	51929303	52073128	29	0.2787	NEUTRAL	NA	2	"INTS6,SERPINE3"
TCGA.AA.A010.01A	13	51956131	51969389	5	-0.035	NEUTRAL	NA	1	INTS6
TCGA.AG.3909.01A	13	52345325	52373622	7	-0.4327	NEUTRAL	NA	1	DHRS12
TCGA.AA.A00K.01A	13	52348029	53240895	69	0.1599	NEUTRAL	NA	12	"ALG11,ATP7B,CCDC70,CKAP2,DHRS12,HNRNPA1L2,NEK3,NEK5,SUGT1,THSD1,UTP14C,VPS36"
TCGA.AA.A01C.01A	13	52351140	52523750	14	0.2218	NEUTRAL	NA	3	"ATP7B,CCDC70,DHRS12"
TCGA.AA.A02H.01A	13	52364091	53047926	83	0.1121	NEUTRAL	NA	10	"ALG11,ATP7B,CCDC70,CKAP2,DHRS12,NEK3,NEK5,THSD1,UTP14C,VPS36"
TCGA.AG.3591	13	52407604	62074765	2547	0.1812	NEUTRAL	NA	23	"ALG11,ATP7B,CCDC70,CKAP2,DIAPH3,HNRNPA1L2,LECT1,NEK3,NEK5,OLFM4,PCDH17,PCDH20,PCDH8,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,SUGT1,TDRD3,THSD1,UTP14C,VPS36"
TCGA.AA.A01C.01A	13	52585351	53042349	58	0.0515	NEUTRAL	NA	8	"ALG11,ATP7B,CKAP2,NEK3,NEK5,THSD1,UTP14C,VPS36"
TCGA.CK.5914.01A	13	52593032	53049041	61	0.0913	NEUTRAL	NA	7	"ALG11,CKAP2,NEK3,NEK5,THSD1,UTP14C,VPS36"
TCGA.AA.3548	13	52601052	115106995	20916	0.0013	NEUTRAL	NA	139	Too-Many
TCGA.AG.4009.01A	13	52606399	52667162	10	-0.4738	NEUTRAL	NA	2	"NEK5,UTP14C"
TCGA.AG.3909.01A	13	52639494	53240895	64	-0.3479	NEUTRAL	NA	7	"CKAP2,HNRNPA1L2,NEK3,NEK5,SUGT1,THSD1,VPS36"
TCGA.AG.3906.01A	13	52701450	52976610	17	0.1751	NEUTRAL	NA	3	"NEK3,NEK5,THSD1"
TCGA.AA.A010.01A	13	52717981	53001091	17	-0.2011	NEUTRAL	NA	3	"NEK3,THSD1,VPS36"
TCGA.F4.6461	13	52763161	55255618	688	-0.4639	NEUTRAL	NA	8	"CKAP2,HNRNPA1L2,LECT1,OLFM4,PCDH8,SUGT1,THSD1,VPS36"
TCGA.AG.4009.01A	13	52971319	53039379	18	-0.3644	NEUTRAL	NA	3	"CKAP2,THSD1,VPS36"
TCGA.AA.A00A.01A	13	53007744	53261842	27	0.3535	NEUTRAL	NA	4	"CKAP2,HNRNPA1L2,SUGT1,VPS36"
TCGA.AG.4009.01A	13	53042349	53049041	3	0.2764	NEUTRAL	NA	1	CKAP2
TCGA.AG.3906.01A	13	53047926	73589991	151	0.1978	NEUTRAL	NA	22	"BORA,CKAP2,DACH1,DIAPH3,DIS3,HNRNPA1L2,KLHL1,LECT1,MZT1,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PIBF1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,SUGT1,TDRD3"
TCGA.D5.6533	13	53199836	72167136	5189	0.2708	NEUTRAL	NA	17	"DACH1,DIAPH3,HNRNPA1L2,KLHL1,LECT1,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,SUGT1,TDRD3"
TCGA.AA.A010.01A	13	53216602	77570007	242	0.0951	NEUTRAL	NA	31	"BORA,CLN5,COMMD6,DACH1,DIAPH3,DIS3,HNRNPA1L2,IRG1,KCTD12,KLF12,KLF5,KLHL1,LECT1,LMO7,LMO7DN,MZT1,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PIBF1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,SUGT1,TBC1D4,TDRD3,UCHL3"
TCGA.AA.A00N.01A	13	53239759	53420680	15	-0.2642	NEUTRAL	NA	3	"LECT1,PCDH8,SUGT1"
TCGA.AG.A00C.01A	13	53239759	72204656	88	0.162	NEUTRAL	NA	16	"DACH1,DIAPH3,KLHL1,LECT1,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,SUGT1,TDRD3"
TCGA.AA.A00K.01A	13	53250339	115089311	1176	-0.0942	NEUTRAL	NA	131	Too-Many
TCGA.AA.A00A.01A	13	53277709	115089311	1173	0.0216	NEUTRAL	NA	130	Too-Many
TCGA.AA.A00Q.01A	13	53298081	53608434	10	0.0497	NEUTRAL	NA	3	"LECT1,OLFM4,PCDH8"
TCGA.AG.3909.01A	13	53307302	53420680	7	-0.2451	NEUTRAL	NA	2	"LECT1,PCDH8"
TCGA.AA.A00Q.01A	13	53616003	96285430	407	0.3277	NEUTRAL	NA	49	"ABCC4,BORA,CLDN10,CLN5,COMMD6,DACH1,DCT,DIAPH3,DIS3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,OLFM4,PCDH17,PCDH20,PCDH9,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TDRD3,TGDS,UCHL3"
TCGA.AA.3850	13	53673744	53924430	76	-0.11365	NEUTRAL	NA	0	None
TCGA.AA.3941	13	53928245	56685869	715	-0.0866	NEUTRAL	NA	0	None
TCGA.AA.3982	13	53928245	59168418	1178	-0.422	NEUTRAL	NA	6	"PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.AA.3844	13	53936097	59824998	1406	-0.0539	NEUTRAL	NA	6	"PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.QG.A5Z1	13	53970077	54066313	29	-0.4276	NEUTRAL	NA	0	None
TCGA.DY.A1DF	13	54794354	55868212	279	0.3321	NEUTRAL	NA	0	None
TCGA.AG.3891.01A	13	54886069	73589991	120	-0.0331	NEUTRAL	NA	16	"BORA,DACH1,DIAPH3,DIS3,KLHL1,MZT1,PCDH17,PCDH20,PCDH9,PIBF1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.DT.5265	13	55090261	58491015	650	0.1046	NEUTRAL	NA	6	"PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.AA.3488	13	55121513	96300871	12610	0.2754	NEUTRAL	NA	48	"ABCC4,BORA,CLDN10,CLN5,COMMD6,DACH1,DCT,DIAPH3,DIS3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH17,PCDH20,PCDH9,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TDRD3,TGDS,UCHL3"
TCGA.F4.6461	13	55256338	115106995	20169	0.0269	NEUTRAL	NA	127	Too-Many
TCGA.AA.3697	13	55384563	59168418	738	0.2846	NEUTRAL	NA	6	"PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.AF.2693	13	56202655	56275806	18	0.1987	NEUTRAL	NA	0	None
TCGA.AF.2693	13	56382379	56389984	3	0.2104	NEUTRAL	NA	0	None
TCGA.AA.3941	13	56788048	59246293	456	-0.028	NEUTRAL	NA	6	"PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.A6.A56B	13	56962694	78707672	6640	0.3098	NEUTRAL	NA	31	"BORA,CLN5,COMMD6,DACH1,DIAPH3,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,PCDH17,PCDH20,PCDH9,PIBF1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,SCEL,SLAIN1,TBC1D4,TDRD3,UCHL3"
TCGA.F5.6864	13	57026859	81308124	7595	-0.0138	NEUTRAL	NA	36	"BORA,CLN5,COMMD6,DACH1,DIAPH3,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH17,PCDH20,PCDH9,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,TDRD3,UCHL3"
TCGA.AG.A01W.01A	13	57104635	114107384	1394	0.1995	NEUTRAL	NA	115	Too-Many
TCGA.CM.6675	13	57296274	115106995	19727	-0.0458	NEUTRAL	NA	127	Too-Many
TCGA.5M.AAT5	13	57763750	57806674	4	-0.3684	NEUTRAL	NA	0	None
TCGA.G4.6295	13	57816905	100342589	13390	0.3014	NEUTRAL	NA	60	"ABCC4,BORA,CLDN10,CLN5,CLYBL,COMMD6,DACH1,DCT,DIAPH3,DIS3,DNAJC3,DOCK9,DZIP1,EDNRB,FARP1,FBXL3,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MBNL2,MYCBP2,MZT1,NDFIP2,OXGR1,PCDH17,PCDH20,PCDH9,PIBF1,POU4F1,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TBC1D4,TDRD3,TGDS,TM9SF2,UBAC2,UCHL3,UGGT2"
TCGA.AA.3867	13	57926558	57944355	5	-0.3159	NEUTRAL	NA	0	None
TCGA.DC.6682	13	58406122	58687180	70	-0.4617	NEUTRAL	NA	0	None
TCGA.F5.6863	13	58591106	58597029	3	-0.2932	NEUTRAL	NA	0	None
TCGA.DC.6682	13	58694866	61437935	895	0.0145	NEUTRAL	NA	2	"DIAPH3,TDRD3"
TCGA.5M.AAT5	13	59096548	115106995	19469	0.0179	NEUTRAL	NA	121	Too-Many
TCGA.AA.3982	13	59170845	61603380	843	0.0159	NEUTRAL	NA	2	"DIAPH3,TDRD3"
TCGA.AA.3850	13	59256838	61434515	761	-0.19245	NEUTRAL	NA	2	"DIAPH3,TDRD3"
TCGA.AA.3844	13	59844495	61519592	583	0.2456	NEUTRAL	NA	2	"DIAPH3,TDRD3"
TCGA.AF.2693	13	60071580	60260480	71	0.0415	NEUTRAL	NA	1	DIAPH3
TCGA.AG.3731	13	60417406	62321072	594	-0.3037	NEUTRAL	NA	3	"DIAPH3,PCDH20,TDRD3"
TCGA.EI.6508	13	60845065	112352357	18171	-0.0032	NEUTRAL	NA	93	"ABCC4,ABHD13,ANKRD10,ARGLU1,ARHGEF7,BIVM,BIVM-ERCC5,BORA,CARKD,CARS2,CCDC168,CLDN10,CLN5,CLYBL,COL4A1,COL4A2,COMMD6,DACH1,DAOA,DCT,DIS3,DNAJC3,DOCK9,DZIP1,EDNRB,EFNB2,ERCC5,FAM155A,FARP1,FBXL3,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,ING1,IPO5,IRG1,IRS2,ITGBL1,KCTD12,KDELC1,KLF12,KLF5,KLHL1,LIG4,LMO7,LMO7DN,MBNL2,METTL21C,MYCBP2,MYO16,MZT1,NALCN,NDFIP2,OXGR1,PCCA,PCDH20,PCDH9,PIBF1,POU4F1,RAB20,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TBC1D4,TDRD3,TEX29,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UCHL3,UGGT2,ZIC2,ZIC5"
TCGA.DC.6682	13	61510731	67141557	1471	-0.0097	NEUTRAL	NA	2	"PCDH20,PCDH9"
TCGA.AA.3844	13	61521918	68095174	1742	-0.1006	NEUTRAL	NA	2	"PCDH20,PCDH9"
TCGA.AA.3982	13	61604735	68125619	1732	-0.3931	NEUTRAL	NA	2	"PCDH20,PCDH9"
TCGA.AA.3941	13	61612739	63381409	431	-0.0518	NEUTRAL	NA	1	PCDH20
TCGA.AG.3732	13	61629963	61864237	85	-0.3782	NEUTRAL	NA	0	None
TCGA.AG.3732	13	61866408	71784620	2728	0.0954	NEUTRAL	NA	3	"KLHL1,PCDH20,PCDH9"
TCGA.AA.A00D.01A	13	61989118	70681318	16	0.1736	NEUTRAL	NA	3	"KLHL1,PCDH20,PCDH9"
TCGA.AG.3591	13	62075518	65092588	739	-0.1604	NEUTRAL	NA	0	None
TCGA.AA.3664	13	62160543	115106995	18442	0.3437	NEUTRAL	NA	118	Too-Many
TCGA.AG.3731	13	62322747	85303349	7229	0.0195	NEUTRAL	NA	28	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH9,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SPRY2,TBC1D4,UCHL3"
TCGA.F5.6571	13	62429393	63753854	279	-0.0813	NEUTRAL	NA	0	None
TCGA.AA.3697	13	62895217	63679701	157	0.2126	NEUTRAL	NA	0	None
TCGA.AF.2693	13	62917186	62927506	5	0.2126	NEUTRAL	NA	0	None
TCGA.AA.3941	13	63384964	68122237	1298	-0.0621	NEUTRAL	NA	1	PCDH9
TCGA.G4.6626	13	63680949	115106995	18102	0.1827	NEUTRAL	NA	118	Too-Many
TCGA.AA.3968	13	64152806	73108278	2703	-0.1194	NEUTRAL	NA	3	"DACH1,KLHL1,PCDH9"
TCGA.A6.4105	13	64244495	69550114	1453	0.0872	NEUTRAL	NA	1	PCDH9
TCGA.WS.AB45	13	64453790	115106995	17900	-0.0022	NEUTRAL	NA	118	Too-Many
TCGA.AG.A026	13	64825172	64925017	25	-0.2859	NEUTRAL	NA	0	None
TCGA.AZ.4308	13	64864421	65179585	87	0.3708	NEUTRAL	NA	0	None
TCGA.AA.3950	13	64980804	115106995	17742	-0.049	NEUTRAL	NA	118	Too-Many
TCGA.AG.3591	13	65113645	65282661	53	0.1895	NEUTRAL	NA	0	None
TCGA.DM.A1D9	13	65198160	69065523	1034	-0.0617	NEUTRAL	NA	1	PCDH9
TCGA.AG.3591	13	65300617	72653544	2166	-0.1542	NEUTRAL	NA	3	"DACH1,KLHL1,PCDH9"
TCGA.AA.3673	13	65469454	115106995	17628	0.2122	NEUTRAL	NA	118	Too-Many
TCGA.AU.3779	13	66066817	70839181	1410	-0.4821	NEUTRAL	NA	2	"KLHL1,PCDH9"
TCGA.AA.A022	13	66285495	82878080	5618	0.0665	NEUTRAL	NA	27	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH9,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AF.2693	13	66588890	66653438	23	0.2248	NEUTRAL	NA	0	None
TCGA.EI.6885	13	66696658	68313673	479	-0.3041	NEUTRAL	NA	1	PCDH9
TCGA.DC.6682	13	67536415	83460588	5359	0.339	NEUTRAL	NA	27	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH9,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AF.2693	13	67728011	67735156	6	0.3614	NEUTRAL	NA	1	PCDH9
TCGA.DM.A1HB	13	68110916	71275420	924	-0.0947	NEUTRAL	NA	1	KLHL1
TCGA.AA.3966	13	68122237	69690557	429	0.0256	NEUTRAL	NA	0	None
TCGA.AA.3982	13	68147595	73020351	1539	-0.3835	NEUTRAL	NA	2	"DACH1,KLHL1"
TCGA.AA.3941	13	68150964	73093912	1564	-0.0056	NEUTRAL	NA	2	"DACH1,KLHL1"
TCGA.AA.3844	13	68150964	73466998	1690	0.0191	NEUTRAL	NA	6	"BORA,DACH1,DIS3,KLHL1,MZT1,PIBF1"
TCGA.F5.6464	13	68207008	68491816	59	0.1937	NEUTRAL	NA	0	None
TCGA.EI.6885	13	68316409	115106995	16766	0.0215	NEUTRAL	NA	117	Too-Many
TCGA.SS.A7HO	13	68394997	68458781	16	-0.0691	NEUTRAL	NA	0	None
TCGA.AF.2693	13	68533308	68960953	67	0.2255	NEUTRAL	NA	0	None
TCGA.AF.2693	13	69069935	69875265	297	0.2346	NEUTRAL	NA	0	None
TCGA.DM.A1D9	13	69143630	115106995	16630	-0.0063	NEUTRAL	NA	117	Too-Many
TCGA.DM.A280	13	69269118	82033545	4544	0.2286	NEUTRAL	NA	26	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.A6.4105	13	69618493	72944938	1111	0.1227	NEUTRAL	NA	2	"DACH1,KLHL1"
TCGA.AF.2693	13	70171214	70964902	277	0.2435	NEUTRAL	NA	1	KLHL1
TCGA.AD.5900	13	70294288	78589551	3077	0.355	NEUTRAL	NA	21	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,PIBF1,SCEL,SLAIN1,TBC1D4,UCHL3"
TCGA.AA.3966	13	70298946	115106995	16266	0.0577	NEUTRAL	NA	117	Too-Many
TCGA.CA.6715	13	70767092	70767963	4	-0.3119	NEUTRAL	NA	0	None
TCGA.AA.3986	13	70824108	83935839	4547	0.3388	NEUTRAL	NA	25	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AU.3779	13	70844570	77416711	2560	0.2048	NEUTRAL	NA	12	"BORA,COMMD6,DACH1,DIS3,KLF12,KLF5,LMO7,LMO7DN,MZT1,PIBF1,TBC1D4,UCHL3"
TCGA.AF.2693	13	71181118	71196601	8	0.0726	NEUTRAL	NA	0	None
TCGA.DM.A1HB	13	71280318	84255614	4398	-0.031	NEUTRAL	NA	25	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AG.3732	13	71797918	115106995	15716	-0.4784	NEUTRAL	NA	116	Too-Many
TCGA.AG.3893	13	72037485	72400564	68	0.2013	NEUTRAL	NA	1	DACH1
TCGA.D5.6533	13	72196335	72277307	15	-0.1493	NEUTRAL	NA	1	DACH1
TCGA.AG.3909.01A	13	72255890	73346280	27	0.0885	NEUTRAL	NA	4	"BORA,DACH1,DIS3,MZT1"
TCGA.D5.6533	13	72277890	90695735	5895	0.3284	NEUTRAL	NA	28	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SPRY2,TBC1D4,UCHL3"
TCGA.CA.5254	13	72514632	73420058	401	-0.1771	NEUTRAL	NA	4	"BORA,DIS3,MZT1,PIBF1"
TCGA.AG.3591	13	72656239	75804473	1269	0.2126	NEUTRAL	NA	6	"BORA,DIS3,KLF12,KLF5,MZT1,PIBF1"
TCGA.A6.4105	13	72954493	115106995	15352	0.1037	NEUTRAL	NA	115	Too-Many
TCGA.D5.6930	13	72954493	115106995	15309	-0.0018	NEUTRAL	NA	115	Too-Many
TCGA.AA.3982	13	73020784	94973270	7080	-0.154	NEUTRAL	NA	29	"BORA,CLN5,COMMD6,DIS3,EDNRB,FBXL3,GPC5,GPC6,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SPRY2,TBC1D4,UCHL3"
TCGA.AA.3850	13	73065847	76608728	1416	-0.21815	NEUTRAL	NA	11	"BORA,COMMD6,DIS3,KLF12,KLF5,LMO7,LMO7DN,MZT1,PIBF1,TBC1D4,UCHL3"
TCGA.AA.3968	13	73113645	73134376	7	0.3703	NEUTRAL	NA	0	None
TCGA.AA.3968	13	73134911	73174133	15	-0.0276	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	13	73355715	73372035	5	0.1796	NEUTRAL	NA	2	"DIS3,PIBF1"
TCGA.T9.A92H	13	73420058	115106995	15164	0.0368	NEUTRAL	NA	112	Too-Many
TCGA.CA.5254	13	73435206	73609010	29	0.2786	NEUTRAL	NA	1	PIBF1
TCGA.DM.A0XF	13	73533588	74395491	343	0.3779	NEUTRAL	NA	3	"KLF12,KLF5,PIBF1"
TCGA.AG.A00C.01A	13	73649795	77459259	75	0.2142	NEUTRAL	NA	8	"COMMD6,KCTD12,KLF12,KLF5,LMO7,LMO7DN,TBC1D4,UCHL3"
TCGA.AH.6549.01A	13	73649795	78337217	210	-0.1009	NEUTRAL	NA	14	"CLN5,COMMD6,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,SCEL,SLAIN1,TBC1D4,UCHL3"
TCGA.AG.3891.01A	13	73649795	98116442	417	0.1104	NEUTRAL	NA	38	"ABCC4,CLDN10,CLN5,COMMD6,DCT,DNAJC3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,HS6ST3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MBNL2,MYCBP2,NDFIP2,OXGR1,POU4F1,RAP2A,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3,UGGT2"
TCGA.AG.3906.01A	13	73649795	98116442	414	0.3	NEUTRAL	NA	38	"ABCC4,CLDN10,CLN5,COMMD6,DCT,DNAJC3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,HS6ST3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MBNL2,MYCBP2,NDFIP2,OXGR1,POU4F1,RAP2A,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3,UGGT2"
TCGA.AA.3844	13	73825333	94916601	6792	0.1076	NEUTRAL	NA	24	"CLN5,COMMD6,EDNRB,FBXL3,GPC5,GPC6,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SPRY2,TBC1D4,UCHL3"
TCGA.AY.6196	13	73846691	85471551	3898	-0.012	NEUTRAL	NA	20	"CLN5,COMMD6,EDNRB,FBXL3,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SPRY2,TBC1D4,UCHL3"
TCGA.DM.A28F	13	73857708	108727148	12521	0.3586	NEUTRAL	NA	69	"ABCC4,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLN5,CLYBL,COMMD6,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EDNRB,EFNB2,ERCC5,FAM155A,FARP1,FBXL3,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,IRG1,ITGBL1,KCTD12,KDELC1,KLF12,LMO7,LMO7DN,MBNL2,METTL21C,MYCBP2,NALCN,NDFIP2,OXGR1,PCCA,POU4F1,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TBC1D4,TEX30,TGDS,TM9SF2,TMTC4,TPP2,UBAC2,UCHL3,UGGT2,ZIC2,ZIC5"
TCGA.DM.A0XD	13	74008196	95717497	7027	-0.0055	NEUTRAL	NA	29	"ABCC4,CLN5,COMMD6,DCT,EDNRB,FBXL3,GPC5,GPC6,GPR180,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3"
TCGA.CA.5254	13	74077480	81206026	2660	0.173	NEUTRAL	NA	19	"CLN5,COMMD6,EDNRB,FBXL3,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AA.3952	13	74084942	86470956	4170	-0.0392	NEUTRAL	NA	21	"CLN5,COMMD6,EDNRB,FBXL3,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK6,SPRY2,TBC1D4,UCHL3"
TCGA.AA.A00D.01A	13	74269587	75868942	9	0.1582	NEUTRAL	NA	2	"KLF12,TBC1D4"
TCGA.DM.A0XF	13	74396750	115106995	14804	-0.0056	NEUTRAL	NA	110	Too-Many
TCGA.AA.3972	13	74603914	74605073	3	-0.3279	NEUTRAL	NA	1	KLF12
TCGA.AF.2693	13	74603914	74605073	3	-0.2407	NEUTRAL	NA	1	KLF12
TCGA.AA.3870	13	74611940	82077927	2671	0.3398	NEUTRAL	NA	19	"CLN5,COMMD6,EDNRB,FBXL3,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AA.3989	13	74611940	115106995	14706	0.2641	NEUTRAL	NA	110	Too-Many
TCGA.A6.2675	13	74727536	97167151	7137	0.281	NEUTRAL	NA	33	"ABCC4,CLDN10,CLN5,COMMD6,DCT,DNAJC3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,HS6ST3,IRG1,KCTD12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3,UGGT2"
TCGA.F4.6807	13	74736489	86988609	3992	-0.4466	NEUTRAL	NA	20	"CLN5,COMMD6,EDNRB,FBXL3,IRG1,KCTD12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK6,SPRY2,TBC1D4,UCHL3"
TCGA.AF.2693	13	74839562	75121839	136	0.2087	NEUTRAL	NA	0	None
TCGA.AA.A01S	13	75021502	87594566	4010	-0.01595	NEUTRAL	NA	20	"CLN5,COMMD6,EDNRB,FBXL3,IRG1,KCTD12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK6,SPRY2,TBC1D4,UCHL3"
TCGA.A6.6137	13	75207895	115106995	14430	0.2628	NEUTRAL	NA	109	Too-Many
TCGA.AF.2693	13	75474405	75585201	40	0.0631	NEUTRAL	NA	0	None
TCGA.AD.6895	13	75796833	115106995	14206	0.0227	NEUTRAL	NA	109	Too-Many
TCGA.AG.3591	13	75810213	111510608	13142	-0.1641	NEUTRAL	NA	79	"ABCC4,ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CLDN10,CLN5,CLYBL,COL4A1,COL4A2,COMMD6,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EDNRB,EFNB2,ERCC5,FAM155A,FARP1,FBXL3,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,ING1,IPO5,IRG1,IRS2,ITGBL1,KCTD12,KDELC1,LIG4,LMO7,LMO7DN,MBNL2,METTL21C,MYCBP2,MYO16,NALCN,NDFIP2,OXGR1,PCCA,POU4F1,RAB20,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TBC1D4,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UCHL3,UGGT2,ZIC2,ZIC5"
TCGA.AA.A00D.01A	13	76381565	77531113	26	0.3075	NEUTRAL	NA	4	"IRG1,KCTD12,LMO7,LMO7DN"
TCGA.AF.2693	13	76655991	76731801	45	-0.0859	NEUTRAL	NA	0	None
TCGA.AA.3850	13	76656984	78455940	608	-0.27415	NEUTRAL	NA	7	"CLN5,FBXL3,IRG1,KCTD12,MYCBP2,SCEL,SLAIN1"
TCGA.AG.4021	13	77053394	115106995	13682	-0.1002	NEUTRAL	NA	104	Too-Many
TCGA.AG.3909.01A	13	77459259	77526587	3	0.3109	NEUTRAL	NA	1	KCTD12
TCGA.AG.4009.01A	13	77459259	77595626	10	-0.0974	NEUTRAL	NA	4	"CLN5,FBXL3,IRG1,KCTD12"
TCGA.CK.5914.01A	13	77569146	77595626	7	-0.1158	NEUTRAL	NA	2	"CLN5,FBXL3"
TCGA.AA.A010.01A	13	77625083	77655932	19	-0.2151	NEUTRAL	NA	1	MYCBP2
TCGA.AA.A00J.01A	13	77695461	115089311	992	-0.0232	NEUTRAL	NA	100	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EDNRB,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYCBP2,MYO16,NALCN,NDFIP2,OXGR1,PCCA,PCID2,POU4F1,PROZ,RAB20,RAP2A,RASA3,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,SPRY2,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.CK.5914.01A	13	77739356	77750584	7	0.2232	NEUTRAL	NA	1	MYCBP2
TCGA.AA.3930.01A	13	77765777	77831759	14	0.0706	NEUTRAL	NA	1	MYCBP2
TCGA.AA.A010.01A	13	77791928	78218300	50	-0.1021	NEUTRAL	NA	2	"MYCBP2,SCEL"
TCGA.CK.5914.01A	13	78208450	78218300	5	0.0139	NEUTRAL	NA	1	SCEL
TCGA.A6.6140	13	78210310	86937281	2671	-0.0171	NEUTRAL	NA	10	"EDNRB,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK6,SPRY2"
TCGA.AH.6549.01A	13	78470530	100193761	378	0.2284	NEUTRAL	NA	34	"ABCC4,CLDN10,DCT,DNAJC3,DOCK9,DZIP1,EDNRB,FARP1,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,MBNL2,NDFIP2,OXGR1,POU4F1,RAP2A,RBM26,RNF113B,RNF219,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TGDS,TM9SF2,UBAC2,UGGT2"
TCGA.AF.2693	13	78522426	115106995	13219	0.0083	NEUTRAL	NA	97	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EDNRB,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,NDFIP2,OXGR1,PCCA,PCID2,POU4F1,PROZ,RAB20,RAP2A,RASA3,RBM26,RNF113B,RNF219,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,SPRY2,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AD.5900	13	78603570	80507714	701	0.0236	NEUTRAL	NA	4	"NDFIP2,POU4F1,RBM26,RNF219"
TCGA.D5.6923	13	78612753	78636790	4	-0.3622	NEUTRAL	NA	0	None
TCGA.D5.6923	13	78646241	86321089	2382	0.2347	NEUTRAL	NA	6	"NDFIP2,POU4F1,RBM26,RNF219,SLITRK1,SPRY2"
TCGA.A6.A56B	13	78708063	92423426	3965	-0.0039	NEUTRAL	NA	9	"GPC5,NDFIP2,POU4F1,RBM26,RNF219,SLITRK1,SLITRK5,SLITRK6,SPRY2"
TCGA.AA.3850	13	78920065	81006954	738	-0.25165	NEUTRAL	NA	5	"NDFIP2,POU4F1,RBM26,RNF219,SPRY2"
TCGA.A6.2681	13	78940423	83074795	1277	0.3076	NEUTRAL	NA	5	"NDFIP2,POU4F1,RBM26,RNF219,SPRY2"
TCGA.AA.A00N.01A	13	79175498	79889020	9	-0.5091	NEUTRAL	NA	2	"POU4F1,RNF219"
TCGA.AG.3896	13	79181331	83935839	1389	-0.0034	NEUTRAL	NA	4	"NDFIP2,RBM26,RNF219,SPRY2"
TCGA.AA.A010.01A	13	79209193	98043538	208	0.0907	NEUTRAL	NA	21	"ABCC4,CLDN10,DCT,DNAJC3,DZIP1,GPC5,GPC6,GPR180,HS6ST3,MBNL2,NDFIP2,OXGR1,RBM26,RNF219,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TGDS,UGGT2"
TCGA.DM.A28M.01A	13	79928525	115089311	1082	-0.1377	NEUTRAL	NA	94	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,NDFIP2,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RBM26,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,SPRY2,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AG.4015	13	80428110	98527273	5458	-0.041	NEUTRAL	NA	19	"ABCC4,CLDN10,DCT,DNAJC3,DZIP1,GPC5,GPC6,GPR180,HS6ST3,MBNL2,OXGR1,RAP2A,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TGDS,UGGT2"
TCGA.AD.5900	13	80543369	80912100	149	0.3546	NEUTRAL	NA	1	SPRY2
TCGA.BM.6198	13	80785027	101801931	6574	-0.41425	NEUTRAL	NA	36	"ABCC4,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,FARP1,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,MBNL2,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TGDS,TM9SF2,TMTC4,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.QG.A5YX	13	80877661	115106995	12250	-0.0171	NEUTRAL	NA	92	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,SPRY2,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AD.5900	13	80914774	115106995	12334	0.0065	NEUTRAL	NA	92	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,SPRY2,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3697	13	81137355	81606744	128	0.2954	NEUTRAL	NA	0	None
TCGA.CA.5254	13	81231377	85303220	1080	0.2005	NEUTRAL	NA	1	SLITRK1
TCGA.G4.6314	13	81651626	115106995	12156	-0.3284	NEUTRAL	NA	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3941	13	81990515	94973270	3838	0.0886	NEUTRAL	NA	5	"GPC5,GPC6,SLITRK1,SLITRK5,SLITRK6"
TCGA.F5.6864	13	82072944	84342854	609	-0.0065	NEUTRAL	NA	0	None
TCGA.DM.A280	13	82075591	115106995	11989	0.2396	NEUTRAL	NA	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.F5.6571	13	82081149	82088953	10	0.168	NEUTRAL	NA	0	None
TCGA.AA.3870	13	82082701	115106995	12025	0.3618	NEUTRAL	NA	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.A01T	13	82137070	86953914	1355	0.0058	NEUTRAL	NA	2	"SLITRK1,SLITRK6"
TCGA.AA.3930.01A	13	82264305	92345393	11	-0.1901	NEUTRAL	NA	4	"GPC5,SLITRK1,SLITRK5,SLITRK6"
TCGA.AU.3779	13	82668714	94091261	3304	0.2338	NEUTRAL	NA	5	"GPC5,GPC6,SLITRK1,SLITRK5,SLITRK6"
TCGA.A6.2681	13	83185043	86613387	1041	0.2758	NEUTRAL	NA	2	"SLITRK1,SLITRK6"
TCGA.AG.3883	13	83294194	115106995	11722	0.0507	NEUTRAL	NA	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.DC.6682	13	83465958	83811936	99	0.0446	NEUTRAL	NA	0	None
TCGA.G4.6322	13	83741221	115106995	11599	0	NEUTRAL	NA	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.DC.6682	13	83817129	87317977	1022	-0.4507	NEUTRAL	NA	2	"SLITRK1,SLITRK6"
TCGA.AZ.6601	13	83903521	84490717	145	-0.3487	NEUTRAL	NA	1	SLITRK1
TCGA.AG.3896	13	83956170	87428271	1016	-0.004	NEUTRAL	NA	2	"SLITRK1,SLITRK6"
TCGA.AA.3986	13	83956170	114847012	11475	0.3448	NEUTRAL	NA	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.D5.5540	13	84109167	84141706	20	-0.4193	NEUTRAL	NA	0	None
TCGA.DM.A1HB	13	84306612	85006610	171	-0.0779	NEUTRAL	NA	1	SLITRK1
TCGA.EI.7004	13	84342854	110672967	9838	-0.053	NEUTRAL	NA	55	"ABCC4,ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,IRS2,ITGBL1,KDELC1,LIG4,MBNL2,METTL21C,MYO16,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AZ.6601	13	84498283	115106995	11401	-0.0061	NEUTRAL	NA	90	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.DM.A1HB	13	85036596	115106995	11038	-0.0184	NEUTRAL	NA	90	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.F5.6864	13	85078527	92868371	2202	-0.0212	NEUTRAL	NA	3	"GPC5,SLITRK5,SLITRK6"
TCGA.AG.3731	13	85307410	90441757	1335	-0.298	NEUTRAL	NA	2	"SLITRK5,SLITRK6"
TCGA.AY.6196	13	85482242	109864436	9100	-0.0243	NEUTRAL	NA	53	"ABCC4,ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,LIG4,MBNL2,METTL21C,MYO16,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,SLITRK5,SLITRK6,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.A022	13	85616002	115106995	11032	0.0554	NEUTRAL	NA	90	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.D5.6923	13	86326951	115106995	10768	0.2498	NEUTRAL	NA	90	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3693	13	86449036	86470956	6	0.2723	NEUTRAL	NA	0	None
TCGA.F4.6809	13	86758376	115106995	10633	-0.0017	NEUTRAL	NA	89	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.A01T	13	86956786	115106995	10646	0.2958	NEUTRAL	NA	89	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.F4.6807	13	87005616	115106995	10605	0.3211	NEUTRAL	NA	89	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.DC.6682	13	87319742	87668960	61	-0.1288	NEUTRAL	NA	0	None
TCGA.AG.3896	13	87430249	115106995	10496	0.3146	NEUTRAL	NA	89	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.A01S	13	87668960	107884508	7565	-0.02375	NEUTRAL	NA	48	"ABCC4,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.DC.6682	13	87669474	87703217	8	0.3634	NEUTRAL	NA	0	None
TCGA.DC.6682	13	87703309	88276790	93	-0.1606	NEUTRAL	NA	0	None
TCGA.DC.6682	13	88280941	88496805	47	-0.4587	NEUTRAL	NA	1	SLITRK5
TCGA.DM.A1D8	13	88326176	89706537	321	-0.2951	NEUTRAL	NA	1	SLITRK5
TCGA.CK.5914.01A	13	88327594	92002803	3	-0.4369	NEUTRAL	NA	1	SLITRK5
TCGA.DC.6682	13	88500920	115106995	10313	0.0527	NEUTRAL	NA	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3697	13	88539102	88896804	81	0.3164	NEUTRAL	NA	0	None
TCGA.AA.3697	13	88940539	89241405	84	0.2297	NEUTRAL	NA	0	None
TCGA.AA.3952	13	88958935	115106995	10231	-0.0108	NEUTRAL	NA	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.DM.A1D8	13	89706838	115106995	10030	0.0352	NEUTRAL	NA	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.DC.6155	13	90425964	90884270	167	-0.3526	NEUTRAL	NA	0	None
TCGA.AG.3731	13	90457023	115106995	9837	0.0062	NEUTRAL	NA	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.A6.2686	13	90572254	108932116	7390	-0.3255	NEUTRAL	NA	50	"ABCC4,ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,LIG4,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.D5.6533	13	90700795	95158378	1585	-0.3267	NEUTRAL	NA	3	"DCT,GPC5,GPC6"
TCGA.DC.6155	13	90890620	115106995	9626	0.0029	NEUTRAL	NA	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.F5.6702	13	92133608	105274763	5103	0.3633	NEUTRAL	NA	43	"ABCC4,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,ERCC5,FARP1,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.A6.A56B	13	92502204	92601195	23	-0.0104	NEUTRAL	NA	1	GPC5
TCGA.A6.A56B	13	92762052	115106995	9028	-0.0107	NEUTRAL	NA	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.F5.6864	13	92875465	100312962	2683	0.3524	NEUTRAL	NA	26	"ABCC4,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,FARP1,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,MBNL2,OXGR1,RAP2A,RNF113B,SLC15A1,SOX21,STK24,TGDS,TM9SF2,UBAC2,UGGT2"
TCGA.AH.6897	13	93359631	115106995	8827	0.2777	NEUTRAL	NA	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.CA.5254	13	93724497	95351821	655	0.1573	NEUTRAL	NA	4	"DCT,GPC6,GPR180,TGDS"
TCGA.AA.3697	13	93918532	107738980	5671	0.2869	NEUTRAL	NA	45	"ABCC4,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DAOA,DCT,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,FARP1,FGF14,GGACT,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,SOX21,STK24,TEX30,TGDS,TM9SF2,TMTC4,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.3667	13	94050925	94081147	17	0.3447	NEUTRAL	NA	1	GPC6
TCGA.AU.3779	13	94108111	99266780	1811	0.1474	NEUTRAL	NA	18	"ABCC4,CLDN10,DCT,DNAJC3,DZIP1,FARP1,GPC6,GPR180,HS6ST3,IPO5,MBNL2,OXGR1,RAP2A,RNF113B,SOX21,STK24,TGDS,UGGT2"
TCGA.AA.3850	13	94974629	95103045	58	-0.04555	NEUTRAL	NA	2	"DCT,GPC6"
TCGA.AA.3982	13	94974629	97204925	766	0.2783	NEUTRAL	NA	11	"ABCC4,CLDN10,DCT,DNAJC3,DZIP1,GPC6,GPR180,HS6ST3,SOX21,TGDS,UGGT2"
TCGA.AA.3850	13	95103273	95400863	101	0.35505	NEUTRAL	NA	4	"DCT,GPR180,SOX21,TGDS"
TCGA.AG.3909.01A	13	95226973	95235321	8	0.2929	NEUTRAL	NA	1	TGDS
TCGA.AG.3909.01A	13	95243061	95264396	6	-0.3114	NEUTRAL	NA	2	"GPR180,TGDS"
TCGA.CK.5914.01A	13	95243061	95264396	6	0.0639	NEUTRAL	NA	2	"GPR180,TGDS"
TCGA.AG.3909.01A	13	95271384	95686850	8	0.3045	NEUTRAL	NA	3	"ABCC4,GPR180,SOX21"
TCGA.AA.3850	13	95407650	95718487	159	0.00965	NEUTRAL	NA	1	ABCC4
TCGA.AA.3681	13	95559340	95573431	12	0.1923	NEUTRAL	NA	0	None
TCGA.A6.2672	13	95575724	110851807	6491	0.2197	NEUTRAL	NA	47	"ABCC4,ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,COL4A1,DAOA,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPR18,GPR183,HS6ST3,IPO5,IRS2,ITGBL1,KDELC1,LIG4,MBNL2,METTL21C,MYO16,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,STK24,TEX30,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.A6.5661	13	95575724	110862302	6505	-0.2376	NEUTRAL	NA	47	"ABCC4,ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,COL4A1,DAOA,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPR18,GPR183,HS6ST3,IPO5,IRS2,ITGBL1,KDELC1,LIG4,MBNL2,METTL21C,MYO16,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,STK24,TEX30,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.3522	13	95636193	115106995	7933	0.0248	NEUTRAL	NA	82	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AF.2689	13	95636193	115106995	7933	0.2462	NEUTRAL	NA	82	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AZ.4684.01A	13	95723879	96453978	62	0.2827	NEUTRAL	NA	5	"ABCC4,CLDN10,DNAJC3,DZIP1,UGGT2"
TCGA.DM.A0XD	13	95808917	107071099	4600	-0.0153	NEUTRAL	NA	38	"ABCC4,BIVM,BIVM-ERCC5,CCDC168,CLDN10,CLYBL,DAOA,DNAJC3,DOCK9,DZIP1,ERCC5,FARP1,FGF14,GGACT,GPR18,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,MBNL2,METTL21C,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,STK24,TEX30,TM9SF2,TMTC4,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.3850	13	96176680	96472036	51	0.15265	NEUTRAL	NA	4	"CLDN10,DNAJC3,DZIP1,UGGT2"
TCGA.AG.3909.01A	13	96272093	99092877	115	0.3055	NEUTRAL	NA	10	"DNAJC3,DZIP1,FARP1,HS6ST3,IPO5,MBNL2,OXGR1,RAP2A,RNF113B,UGGT2"
TCGA.AA.A00Q.01A	13	96293498	96361464	4	-0.1978	NEUTRAL	NA	2	"DNAJC3,DZIP1"
TCGA.AA.A00N.01A	13	96375449	96555060	28	0.1621	NEUTRAL	NA	2	"DNAJC3,UGGT2"
TCGA.DM.A1D7	13	96435950	110039904	5771	0.2696	NEUTRAL	NA	42	"ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLYBL,DAOA,DNAJC3,DOCK9,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPR18,GPR183,HS6ST3,IPO5,ITGBL1,KDELC1,LIG4,MBNL2,METTL21C,MYO16,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC10A2,SLC15A1,STK24,TEX30,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.3850	13	96476781	97639413	272	-0.33605	NEUTRAL	NA	3	"HS6ST3,OXGR1,UGGT2"
TCGA.CK.5914.01A	13	96577881	96592169	4	-0.2119	NEUTRAL	NA	1	UGGT2
TCGA.A6.2675	13	97181595	115106995	7403	-0.0109	NEUTRAL	NA	77	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3982	13	97205717	97645967	109	-0.151	NEUTRAL	NA	2	"HS6ST3,OXGR1"
TCGA.AA.3844	13	97293453	97399013	20	-0.4734	NEUTRAL	NA	1	HS6ST3
TCGA.AA.3955	13	97293453	97399013	20	-0.0022	NEUTRAL	NA	1	HS6ST3
TCGA.AA.3973	13	97328170	97376922	10	0.3266	NEUTRAL	NA	1	HS6ST3
TCGA.AA.3975	13	97338026	97343283	4	0.0711	NEUTRAL	NA	1	HS6ST3
TCGA.AA.3968	13	97338026	97376922	7	-0.2592	NEUTRAL	NA	1	HS6ST3
TCGA.AA.3844	13	97400814	97599328	65	0.3288	NEUTRAL	NA	1	HS6ST3
TCGA.AA.3956	13	97400814	115106995	7404	0.3452	NEUTRAL	NA	77	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3844	13	97615816	97639413	6	-0.4741	NEUTRAL	NA	1	OXGR1
TCGA.AA.3850	13	97645269	98495164	283	0.04745	NEUTRAL	NA	3	"MBNL2,OXGR1,RAP2A"
TCGA.AA.3982	13	97646093	101802099	1530	0.3779	NEUTRAL	NA	20	"CLYBL,DOCK9,FARP1,GGACT,GPR18,GPR183,IPO5,MBNL2,NALCN,OXGR1,PCCA,RAP2A,RNF113B,SLC15A1,STK24,TM9SF2,TMTC4,UBAC2,ZIC2,ZIC5"
TCGA.AA.A00L.01A	13	97995231	98634735	12	0.1379	NEUTRAL	NA	3	"IPO5,MBNL2,RAP2A"
TCGA.AA.3941	13	98266146	98271910	4	-0.3768	NEUTRAL	NA	0	None
TCGA.AA.3850	13	98502728	101721701	1209	0.32125	NEUTRAL	NA	17	"CLYBL,DOCK9,FARP1,GGACT,GPR18,GPR183,IPO5,NALCN,PCCA,RNF113B,SLC15A1,STK24,TM9SF2,TMTC4,UBAC2,ZIC2,ZIC5"
TCGA.CI.6622	13	98527273	98530795	6	-0.2521	NEUTRAL	NA	0	None
TCGA.AZ.5403	13	98530123	98530795	5	-0.4774	NEUTRAL	NA	0	None
TCGA.G4.6311	13	98538298	112967323	6511	0.2203	NEUTRAL	NA	47	"ABHD13,ANKRD10,ARGLU1,ARHGEF7,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CLYBL,COL4A1,COL4A2,DAOA,DOCK9,EFNB2,ERCC5,FAM155A,FARP1,FGF14,GGACT,GPR18,GPR183,ING1,IPO5,IRS2,ITGBL1,KDELC1,LIG4,METTL21C,MYO16,NALCN,PCCA,RAB20,RNF113B,SLC10A2,SLC15A1,SOX1,STK24,TEX29,TEX30,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,ZIC2,ZIC5"
TCGA.AG.4015	13	98538298	115106995	7029	-0.0255	NEUTRAL	NA	73	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AZ.4684.01A	13	98621971	101735395	236	0.3484	NEUTRAL	NA	17	"CLYBL,DOCK9,FARP1,GGACT,GPR18,GPR183,IPO5,NALCN,PCCA,RNF113B,SLC15A1,STK24,TM9SF2,TMTC4,UBAC2,ZIC2,ZIC5"
TCGA.AG.3891.01A	13	98645114	100537189	164	0.2587	NEUTRAL	NA	11	"CLYBL,DOCK9,FARP1,GPR18,GPR183,IPO5,RNF113B,SLC15A1,STK24,TM9SF2,UBAC2"
TCGA.AG.3906.01A	13	98649732	99853648	126	0.3278	NEUTRAL	NA	7	"DOCK9,FARP1,IPO5,RNF113B,SLC15A1,STK24,UBAC2"
TCGA.AA.A010.01A	13	98652753	98673937	13	-0.3374	NEUTRAL	NA	1	IPO5
TCGA.CK.5914.01A	13	99087803	99171459	19	0.1071	NEUTRAL	NA	2	"FARP1,STK24"
TCGA.AA.A02K.01A	13	99091046	99098884	6	-0.4706	NEUTRAL	NA	1	FARP1
TCGA.AA.A02K.01A	13	99100432	103514334	306	0.0249	NEUTRAL	NA	25	"BIVM,BIVM-ERCC5,CCDC168,CLYBL,DOCK9,ERCC5,FARP1,FGF14,GGACT,GPR18,GPR183,ITGBL1,KDELC1,METTL21C,NALCN,PCCA,SLC15A1,STK24,TEX30,TM9SF2,TMTC4,TPP2,UBAC2,ZIC2,ZIC5"
TCGA.AA.A01Q.01A	13	99336930	100523144	56	0.1982	NEUTRAL	NA	7	"CLYBL,DOCK9,GPR18,GPR183,SLC15A1,TM9SF2,UBAC2"
TCGA.AA.A010.01A	13	99354657	99378336	13	-0.1323	NEUTRAL	NA	1	SLC15A1
TCGA.AG.3611.01A	13	99481579	99629986	6	-0.1076	NEUTRAL	NA	1	DOCK9
TCGA.AA.A00Q.01A	13	99483585	115089311	624	0.3652	NEUTRAL	NA	68	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AA.A010.01A	13	99532089	99853648	28	0.3319	NEUTRAL	NA	2	"DOCK9,UBAC2"
TCGA.AG.3909.01A	13	99853077	99896720	5	-0.345	NEUTRAL	NA	1	UBAC2
TCGA.CK.5914.01A	13	99853648	99907082	5	0.068	NEUTRAL	NA	2	"GPR18,UBAC2"
TCGA.AG.3611.01A	13	99853648	114774800	580	0.2144	NEUTRAL	NA	64	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,ZIC2,ZIC5"
TCGA.AA.A00N.01A	13	99947262	100537189	33	0.2567	NEUTRAL	NA	4	"CLYBL,GPR183,TM9SF2,UBAC2"
TCGA.AG.3906.01A	13	99947262	100543531	33	0.2727	NEUTRAL	NA	4	"CLYBL,GPR183,TM9SF2,UBAC2"
TCGA.AH.6549.01A	13	100196075	107862881	228	-0.0888	NEUTRAL	NA	23	"ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLYBL,DAOA,EFNB2,ERCC5,FAM155A,FGF14,GGACT,ITGBL1,KDELC1,METTL21C,NALCN,PCCA,SLC10A2,TEX30,TM9SF2,TMTC4,TPP2,ZIC2,ZIC5"
TCGA.F5.6864	13	100316134	105183838	2143	-0.0193	NEUTRAL	NA	18	"BIVM,BIVM-ERCC5,CCDC168,CLYBL,ERCC5,FGF14,GGACT,ITGBL1,KDELC1,METTL21C,NALCN,PCCA,SLC10A2,TEX30,TMTC4,TPP2,ZIC2,ZIC5"
TCGA.G4.6295	13	100366470	115106995	6342	0.3027	NEUTRAL	NA	63	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GGACT,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UPF3A,ZIC2,ZIC5"
TCGA.AG.4009.01A	13	100517020	100537189	4	0.173	NEUTRAL	NA	1	CLYBL
TCGA.AG.3909.01A	13	100543531	100635052	4	-0.2664	NEUTRAL	NA	3	"CLYBL,ZIC2,ZIC5"
TCGA.AA.A00N.01A	13	100543531	100945394	20	-0.49	NEUTRAL	NA	4	"CLYBL,PCCA,ZIC2,ZIC5"
TCGA.A6.6653	13	100593547	100751207	25	-0.4807	NEUTRAL	NA	3	"PCCA,ZIC2,ZIC5"
TCGA.AA.A01Q.01A	13	100741335	101288779	31	0.0189	NEUTRAL	NA	3	"GGACT,PCCA,TMTC4"
TCGA.AA.A010.01A	13	100741335	101294416	38	0.1089	NEUTRAL	NA	3	"GGACT,PCCA,TMTC4"
TCGA.A6.6653	13	100751904	115106995	6215	0.0026	NEUTRAL	NA	60	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GGACT,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UPF3A"
TCGA.AG.3891.01A	13	100755079	103381840	126	0.1412	NEUTRAL	NA	9	"CCDC168,FGF14,GGACT,ITGBL1,METTL21C,NALCN,PCCA,TMTC4,TPP2"
TCGA.AG.3906.01A	13	100755079	111546421	348	0.2622	NEUTRAL	NA	31	"ABHD13,ANKRD10,ARGLU1,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,COL4A1,COL4A2,DAOA,EFNB2,ERCC5,FAM155A,FGF14,GGACT,ING1,IRS2,ITGBL1,KDELC1,LIG4,METTL21C,MYO16,NALCN,PCCA,RAB20,SLC10A2,TEX30,TMTC4,TNFSF13B,TPP2"
TCGA.CK.4948.01B	13	101167654	101322525	20	-0.0493	NEUTRAL	NA	3	"GGACT,PCCA,TMTC4"
TCGA.CK.5914.01A	13	101167654	101322525	20	0.363	NEUTRAL	NA	3	"GGACT,PCCA,TMTC4"
TCGA.CA.5254	13	101285638	113525494	5723	-0.0138	NEUTRAL	NA	36	"ABHD13,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,COL4A1,COL4A2,DAOA,EFNB2,ERCC5,FAM155A,FGF14,ING1,IRS2,ITGBL1,KDELC1,LIG4,METTL21C,MYO16,NALCN,RAB20,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TMTC4,TNFSF13B,TPP2,TUBGCP3"
TCGA.AG.4009.01A	13	101287009	101308577	6	0.0782	NEUTRAL	NA	1	TMTC4
TCGA.AA.A00N.01A	13	101287009	101322525	10	-0.3649	NEUTRAL	NA	1	TMTC4
TCGA.AG.4009.01A	13	101315166	101322525	4	-0.4065	NEUTRAL	NA	1	TMTC4
TCGA.AA.3844	13	101406319	102185193	413	0.3037	NEUTRAL	NA	2	"ITGBL1,NALCN"
TCGA.AA.3811	13	101426948	109585697	3980	0.1814	NEUTRAL	NA	20	"ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,DAOA,EFNB2,ERCC5,FAM155A,FGF14,ITGBL1,KDELC1,LIG4,METTL21C,MYO16,NALCN,SLC10A2,TEX30,TNFSF13B,TPP2"
TCGA.AA.3941	13	101539647	101553194	8	0.1255	NEUTRAL	NA	0	None
TCGA.AA.A00D.01A	13	101707615	101717714	5	-0.3055	NEUTRAL	NA	1	NALCN
TCGA.CK.4948.01B	13	101707615	109817212	210	0.2786	NEUTRAL	NA	20	"ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,DAOA,EFNB2,ERCC5,FAM155A,FGF14,ITGBL1,KDELC1,LIG4,METTL21C,MYO16,NALCN,SLC10A2,TEX30,TNFSF13B,TPP2"
TCGA.AA.3861.01A	13	101710242	103504477	127	-0.3734	NEUTRAL	NA	11	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,FGF14,ITGBL1,KDELC1,METTL21C,NALCN,TEX30,TPP2"
TCGA.AA.A01Q.01A	13	101720221	103346670	83	0.0301	NEUTRAL	NA	5	"FGF14,ITGBL1,METTL21C,NALCN,TPP2"
TCGA.AA.3850	13	101724688	102089667	179	-0.26465	NEUTRAL	NA	1	NALCN
TCGA.AA.A010.01A	13	101725886	103330545	78	-0.1578	NEUTRAL	NA	4	"FGF14,ITGBL1,NALCN,TPP2"
TCGA.BM.6198	13	101802099	115106995	5808	-0.02365	NEUTRAL	NA	57	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TMCO3,TMEM255B,TNFSF13B,TPP2,TUBGCP3,UPF3A"
TCGA.AA.3982	13	101803460	102474736	312	-0.0799	NEUTRAL	NA	3	"FGF14,ITGBL1,NALCN"
TCGA.DY.A1DG	13	101813044	102634634	379	0.192	NEUTRAL	NA	3	"FGF14,ITGBL1,NALCN"
TCGA.AA.3941	13	102084485	103180588	514	0.1973	NEUTRAL	NA	2	"FGF14,ITGBL1"
TCGA.AA.3850	13	102098131	102439277	151	-0.38955	NEUTRAL	NA	2	"FGF14,ITGBL1"
TCGA.AA.3867	13	102189124	102200117	5	-0.2255	NEUTRAL	NA	1	ITGBL1
TCGA.AA.3844	13	102205298	102481380	116	0.1617	NEUTRAL	NA	2	"FGF14,ITGBL1"
TCGA.AA.3844	13	102495452	103076944	282	0.0664	NEUTRAL	NA	1	FGF14
TCGA.AA.3977	13	102495452	105805905	1583	-0.1093	NEUTRAL	NA	10	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,FGF14,KDELC1,METTL21C,SLC10A2,TEX30,TPP2"
TCGA.AA.3850	13	102518689	103378853	414	-0.31895	NEUTRAL	NA	3	"FGF14,METTL21C,TPP2"
TCGA.AA.3982	13	102521658	102661604	71	-0.0959	NEUTRAL	NA	1	FGF14
TCGA.DY.A1DG	13	102636269	103143156	241	-0.3928	NEUTRAL	NA	1	FGF14
TCGA.AA.3982	13	102664846	103084806	203	-0.1291	NEUTRAL	NA	1	FGF14
TCGA.AA.3982	13	103095153	103387545	136	0.2109	NEUTRAL	NA	3	"CCDC168,METTL21C,TPP2"
TCGA.DY.A1DG	13	103154398	103378472	108	-0.447	NEUTRAL	NA	2	"METTL21C,TPP2"
TCGA.AA.A01Q.01A	13	103381840	103449137	23	-0.3494	NEUTRAL	NA	3	"CCDC168,KDELC1,TEX30"
TCGA.AG.3891.01A	13	103382553	103399590	7	-0.2996	NEUTRAL	NA	1	CCDC168
TCGA.AA.A00N.01A	13	103383950	103402443	10	-0.3448	NEUTRAL	NA	1	CCDC168
TCGA.AG.4009.01A	13	103388359	103459650	21	-0.1314	NEUTRAL	NA	5	"BIVM,BIVM-ERCC5,CCDC168,KDELC1,TEX30"
TCGA.DY.A1DG	13	103394002	103491626	39	-0.3251	NEUTRAL	NA	5	"BIVM,BIVM-ERCC5,CCDC168,KDELC1,TEX30"
TCGA.AA.3850	13	103397029	103980911	318	-0.16185	NEUTRAL	NA	7	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,KDELC1,SLC10A2,TEX30"
TCGA.AG.A008.01A	13	103399590	115089311	482	0.2187	NEUTRAL	NA	52	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AG.3891.01A	13	103400949	113814280	347	0.115	NEUTRAL	NA	34	"ABHD13,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,COL4A1,COL4A2,DAOA,EFNB2,ERCC5,F10,F7,FAM155A,ING1,IRS2,KDELC1,LIG4,MCF2L,MYO16,PROZ,RAB20,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TNFSF13B,TUBGCP3"
TCGA.AA.3982	13	103406218	103640216	120	0.3242	NEUTRAL	NA	6	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,KDELC1,TEX30"
TCGA.CK.5914.01A	13	103418703	103468731	17	-0.0965	NEUTRAL	NA	4	"BIVM,BIVM-ERCC5,KDELC1,TEX30"
TCGA.AG.A023.01A	13	103418703	111938464	224	0.2236	NEUTRAL	NA	23	"ABHD13,ANKRD10,ARGLU1,ARHGEF7,BIVM,BIVM-ERCC5,CARKD,CARS2,COL4A1,COL4A2,DAOA,EFNB2,ERCC5,FAM155A,ING1,IRS2,KDELC1,LIG4,MYO16,RAB20,SLC10A2,TEX30,TNFSF13B"
TCGA.AA.A01Q.01A	13	103450817	111160234	131	0.0893	NEUTRAL	NA	16	"ABHD13,ARGLU1,BIVM,BIVM-ERCC5,COL4A1,COL4A2,DAOA,EFNB2,ERCC5,FAM155A,IRS2,KDELC1,LIG4,MYO16,SLC10A2,TNFSF13B"
TCGA.AG.3909.01A	13	103468731	103483898	5	0.33	NEUTRAL	NA	2	"BIVM,BIVM-ERCC5"
TCGA.AA.A00N.01A	13	103468731	103491872	8	-0.1203	NEUTRAL	NA	2	"BIVM,BIVM-ERCC5"
TCGA.DY.A1DG	13	103494181	115106995	5028	0.2608	NEUTRAL	NA	48	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM-ERCC5,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,ERCC5,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.A02K.01A	13	103518001	103698472	8	-0.3207	NEUTRAL	NA	3	"BIVM-ERCC5,ERCC5,SLC10A2"
TCGA.AA.3941	13	103640216	103856739	116	0.28	NEUTRAL	NA	1	SLC10A2
TCGA.AA.3982	13	103641252	105806953	1043	-0.1845	NEUTRAL	NA	1	SLC10A2
TCGA.AA.A010.01A	13	103698433	106142144	10	-0.1158	NEUTRAL	NA	2	"DAOA,SLC10A2"
TCGA.AA.3862.01A	13	103698433	114504589	451	-0.0743	NEUTRAL	NA	40	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,SLC10A2,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3"
TCGA.AA.3861.01A	13	103698433	115048261	488	-0.4797	NEUTRAL	NA	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.A02K.01A	13	103701593	115089282	503	0.1234	NEUTRAL	NA	46	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SLC10A2,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.3844	13	103762694	103833354	23	-0.0729	NEUTRAL	NA	0	None
TCGA.AA.3844	13	103833543	110713816	3291	0.2416	NEUTRAL	NA	9	"ABHD13,ARGLU1,DAOA,EFNB2,FAM155A,IRS2,LIG4,MYO16,TNFSF13B"
TCGA.AA.3941	13	103976609	106195918	1046	0.0977	NEUTRAL	NA	1	DAOA
TCGA.DM.A1HA	13	104708033	104952143	110	-0.0996	NEUTRAL	NA	0	None
TCGA.AU.3779	13	105263351	115106995	4160	-0.152	NEUTRAL	NA	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.F5.6702	13	105318904	115106995	4115	0.3647	NEUTRAL	NA	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.3681	13	105805905	105807582	8	-0.1154	NEUTRAL	NA	0	None
TCGA.AA.3982	13	105810792	110293030	2172	0.073	NEUTRAL	NA	8	"ABHD13,ARGLU1,DAOA,EFNB2,FAM155A,LIG4,MYO16,TNFSF13B"
TCGA.AA.3949	13	105810792	115106995	3893	0.1645	NEUTRAL	NA	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.3977	13	105810792	115106995	3884	0.0417	NEUTRAL	NA	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.3850	13	106206418	108049827	869	-0.07495	NEUTRAL	NA	3	"ARGLU1,EFNB2,FAM155A"
TCGA.AA.3941	13	106654537	106674328	15	-0.1535	NEUTRAL	NA	0	None
TCGA.DM.A0XD	13	107166693	115106995	3179	-0.0194	NEUTRAL	NA	44	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AG.4009.01A	13	107187164	107219903	6	-0.3704	NEUTRAL	NA	2	"ARGLU1,EFNB2"
TCGA.AG.3909.01A	13	107187164	108881540	13	-0.2778	NEUTRAL	NA	5	"ABHD13,ARGLU1,EFNB2,FAM155A,LIG4"
TCGA.CK.5914.01A	13	107187164	108886098	17	0.2972	NEUTRAL	NA	5	"ABHD13,ARGLU1,EFNB2,FAM155A,LIG4"
TCGA.AA.3941	13	107398896	107403516	6	-0.3833	NEUTRAL	NA	0	None
TCGA.AA.3941	13	108056113	108062761	9	-0.457	NEUTRAL	NA	1	FAM155A
TCGA.AA.3941	13	108072514	108169071	48	0.1743	NEUTRAL	NA	1	FAM155A
TCGA.AH.6549.01A	13	108183458	115089311	498	0.2355	NEUTRAL	NA	42	"ABHD13,ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.3850	13	108273945	108314780	25	-0.12715	NEUTRAL	NA	1	FAM155A
TCGA.AA.3850	13	108325119	108612792	129	-0.12675	NEUTRAL	NA	1	FAM155A
TCGA.AA.A01S	13	108356328	110984038	1257	-0.00515	NEUTRAL	NA	8	"ABHD13,COL4A1,COL4A2,FAM155A,IRS2,LIG4,MYO16,TNFSF13B"
TCGA.AA.3850	13	108630969	109472147	425	-0.13145	NEUTRAL	NA	4	"ABHD13,LIG4,MYO16,TNFSF13B"
TCGA.DM.A28F	13	108747224	108970235	100	0.3459	NEUTRAL	NA	3	"ABHD13,LIG4,TNFSF13B"
TCGA.AZ.6605	13	108774956	108775336	4	-0.288	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	13	108860839	109858947	47	0.2129	NEUTRAL	NA	4	"ABHD13,LIG4,MYO16,TNFSF13B"
TCGA.DM.A28F	13	108989815	109496927	284	0.365	NEUTRAL	NA	1	MYO16
TCGA.A6.2686	13	109135529	115106995	2292	-0.265	NEUTRAL	NA	38	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.3850	13	109478591	109518577	30	-0.38205	NEUTRAL	NA	1	MYO16
TCGA.AA.3941	13	109480555	109518577	29	0.3609	NEUTRAL	NA	1	MYO16
TCGA.DM.A28F	13	109505139	115106995	2079	0.3415	NEUTRAL	NA	38	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.3850	13	109550560	109888566	158	0.00545	NEUTRAL	NA	1	MYO16
TCGA.AZ.4684.01A	13	109772680	111932594	146	0.3195	NEUTRAL	NA	10	"ANKRD10,ARHGEF7,CARKD,CARS2,COL4A1,COL4A2,ING1,IRS2,MYO16,RAB20"
TCGA.AY.6196	13	109865958	110672967	349	0.2841	NEUTRAL	NA	1	IRS2
TCGA.AA.3850	13	109907416	115106995	1897	0.34125	NEUTRAL	NA	37	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.CK.4948.01B	13	110434350	115089311	451	0.0729	NEUTRAL	NA	37	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AY.6196	13	110678774	111530372	471	0.272	NEUTRAL	NA	6	"CARKD,CARS2,COL4A1,COL4A2,ING1,RAB20"
TCGA.EI.7004	13	110678774	115106995	1556	-0.1623	NEUTRAL	NA	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.DM.A28K	13	110681211	115106995	1552	0.0457	NEUTRAL	NA	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.A010.01A	13	110804644	110821950	9	0.1026	NEUTRAL	NA	1	COL4A1
TCGA.AG.A01N.01A	13	110847355	115089311	341	-0.4749	NEUTRAL	NA	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.A6.2672	13	110852475	115106995	1469	-0.3687	NEUTRAL	NA	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.A02F.01A	13	110861115	115089311	275	0.1301	NEUTRAL	NA	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.A02E.01A	13	110863976	113854698	194	0.2856	NEUTRAL	NA	19	"ANKRD10,ARHGEF7,ATP11A,ATP11AUN,CARKD,CARS2,COL4A1,COL4A2,F10,F7,ING1,MCF2L,PCID2,PROZ,RAB20,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.AA.3844	13	110922721	110945974	16	0.2598	NEUTRAL	NA	1	COL4A1
TCGA.AM.5820	13	110984608	114978472	1367	0.2554	NEUTRAL	NA	32	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3"
TCGA.AA.A01I.01A	13	111009759	115089311	310	-0.0872	NEUTRAL	NA	35	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.CK.5914.01A	13	111082196	111092068	8	-0.1191	NEUTRAL	NA	1	COL4A2
TCGA.AG.3909.01A	13	111084588	111806199	65	-0.2886	NEUTRAL	NA	7	"ANKRD10,ARHGEF7,CARKD,CARS2,COL4A2,ING1,RAB20"
TCGA.A6.3808.01A	13	111111086	113724335	179	-0.2785	NEUTRAL	NA	14	"ANKRD10,ARHGEF7,ATP11A,ATP11AUN,CARKD,CARS2,COL4A2,ING1,MCF2L,RAB20,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.AA.A00N.01A	13	111125264	111267990	21	0.1534	NEUTRAL	NA	3	"CARKD,COL4A2,RAB20"
TCGA.AA.3939.01A	13	111147639	113477612	117	0.354	NEUTRAL	NA	13	"ANKRD10,ARHGEF7,ATP11A,ATP11AUN,CARKD,CARS2,COL4A2,ING1,RAB20,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.AA.A01C.01A	13	111164243	115089311	287	0.322	NEUTRAL	NA	35	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.A010.01A	13	111175975	111335381	21	0.0498	NEUTRAL	NA	3	"CARKD,CARS2,RAB20"
TCGA.AA.A01Q.01A	13	111175975	113487147	107	-0.2575	NEUTRAL	NA	12	"ANKRD10,ARHGEF7,ATP11A,ATP11AUN,CARKD,CARS2,ING1,RAB20,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.DM.A1D7	13	111192506	115106995	1203	0.2302	NEUTRAL	NA	34	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.A01K.01A	13	111274591	115089311	252	-0.4549	NEUTRAL	NA	33	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AG.4009.01A	13	111353768	111562918	11	-0.3485	NEUTRAL	NA	3	"ANKRD10,CARS2,ING1"
TCGA.DC.6683	13	111378651	115106995	1135	0.2886	NEUTRAL	NA	30	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AG.3591	13	111514746	115106995	1091	0.1199	NEUTRAL	NA	30	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AY.6196	13	111533337	115106995	1076	-0.2102	NEUTRAL	NA	30	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AG.3906.01A	13	111558329	113223414	54	-0.0761	NEUTRAL	NA	6	"ANKRD10,ARHGEF7,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.AA.A00N.01A	13	111567024	112297421	30	-0.2282	NEUTRAL	NA	3	"ANKRD10,ARHGEF7,TEX29"
TCGA.AA.3667	13	111588966	111590027	3	-0.4737	NEUTRAL	NA	0	None
TCGA.AD.6890	13	111592779	115106995	1055	0.1145	NEUTRAL	NA	29	"ADPRHL1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AG.3887	13	111592779	115106995	1056	0.3784	NEUTRAL	NA	29	"ADPRHL1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.F4.6459	13	111664291	112782326	422	-0.0874	NEUTRAL	NA	3	"ARHGEF7,SOX1,TEX29"
TCGA.CM.6164	13	111853047	115106995	951	0.1562	NEUTRAL	NA	29	"ADPRHL1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AG.3909.01A	13	111927007	113176586	33	-0.1394	NEUTRAL	NA	5	"ARHGEF7,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.AZ.4684.01A	13	111935438	113478622	61	0.0044	NEUTRAL	NA	7	"ARHGEF7,ATP11A,ATP11AUN,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.AG.A023.01A	13	111940647	115089311	226	-0.2213	NEUTRAL	NA	29	"ADPRHL1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AG.A025.01A	13	111955286	115089311	248	-0.0488	NEUTRAL	NA	29	"ADPRHL1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.CK.5914.01A	13	111996359	112725514	8	-0.3943	NEUTRAL	NA	2	"SOX1,TEX29"
TCGA.F5.6464	13	112550568	112608849	42	-0.0047	NEUTRAL	NA	0	None
TCGA.CM.4752	13	112564064	115106995	682	-0.1864	NEUTRAL	NA	27	"ADPRHL1,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.EI.6508	13	112564064	115106995	682	-0.0848	NEUTRAL	NA	27	"ADPRHL1,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AG.A036.01A	13	112783466	112817926	15	-0.133	NEUTRAL	NA	0	None
TCGA.AG.A036.01A	13	112819031	114107384	173	0.2076	NEUTRAL	NA	14	"ADPRHL1,ATP11A,ATP11AUN,CUL4A,F10,F7,GRTP1,LAMP1,LOC101928841,MCF2L,PCID2,PROZ,SPACA7,TUBGCP3"
TCGA.AA.A00N.01A	13	113030648	113212478	27	-0.0169	NEUTRAL	NA	2	"SPACA7,TUBGCP3"
TCGA.AA.A010.01A	13	113030648	113516704	58	0.2432	NEUTRAL	NA	4	"ATP11A,ATP11AUN,SPACA7,TUBGCP3"
TCGA.CK.5914.01A	13	113047285	115011400	272	0.0745	NEUTRAL	NA	24	"ADPRHL1,ATP11A,ATP11AUN,ATP4B,CDC16,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SPACA7,TFDP1,TMCO3,TMEM255B,TUBGCP3"
TCGA.F4.6459	13	113105674	113271910	59	-0.0084	NEUTRAL	NA	1	TUBGCP3
TCGA.AG.3909.01A	13	113181225	113439397	16	0.2854	NEUTRAL	NA	3	"ATP11A,ATP11AUN,TUBGCP3"
TCGA.AG.3906.01A	13	113333646	114265248	135	0.326	NEUTRAL	NA	15	"ADPRHL1,ATP11A,ATP11AUN,CUL4A,DCUN1D2,F10,F7,GRTP1,LAMP1,LOC101928841,MCF2L,PCID2,PROZ,TFDP1,TMCO3"
TCGA.AG.3909.01A	13	113459249	113798146	65	-0.4712	NEUTRAL	NA	4	"ATP11A,F10,F7,MCF2L"
TCGA.AG.A01J.01A	13	113473567	115089311	184	-0.2144	NEUTRAL	NA	23	"ADPRHL1,ATP11A,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AZ.4684.01A	13	113479695	113814280	83	0.3282	NEUTRAL	NA	5	"ATP11A,F10,F7,MCF2L,PROZ"
TCGA.AA.3939.01A	13	113480970	113798146	75	0.3499	NEUTRAL	NA	4	"ATP11A,F10,F7,MCF2L"
TCGA.AA.A024.01A	13	113480970	114312296	142	0.0278	NEUTRAL	NA	15	"ADPRHL1,ATP11A,ATP4B,CUL4A,DCUN1D2,F10,F7,GRTP1,LAMP1,LOC101928841,MCF2L,PCID2,PROZ,TFDP1,TMCO3"
TCGA.AA.A01Q.01A	13	113571352	114203701	112	-0.166	NEUTRAL	NA	12	"ADPRHL1,CUL4A,DCUN1D2,F10,F7,GRTP1,LAMP1,LOC101928841,MCF2L,PCID2,PROZ,TMCO3"
TCGA.AG.4009.01A	13	113698987	113893695	60	-0.0055	NEUTRAL	NA	6	"CUL4A,F10,F7,MCF2L,PCID2,PROZ"
TCGA.AG.A02X.01A	13	113771779	115089311	148	-0.0163	NEUTRAL	NA	21	"ADPRHL1,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AA.3939.01A	13	113801645	113819299	9	-0.4122	NEUTRAL	NA	2	"F10,PROZ"
TCGA.F4.6459	13	113811477	115106995	249	-0.125	NEUTRAL	NA	19	"ADPRHL1,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AA.3815.01A	13	113812923	115089311	157	-0.1138	NEUTRAL	NA	19	"ADPRHL1,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AZ.4684.01A	13	113815173	113973752	41	-0.1341	NEUTRAL	NA	4	"CUL4A,LAMP1,PCID2,PROZ"
TCGA.AA.3939.01A	13	113824688	115089311	160	0.3308	NEUTRAL	NA	19	"ADPRHL1,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AA.A00N.01A	13	113862844	114107502	38	-0.354	NEUTRAL	NA	6	"ADPRHL1,CUL4A,GRTP1,LAMP1,LOC101928841,PCID2"
TCGA.AA.A02E.01A	13	113873209	115089311	107	0.196	NEUTRAL	NA	17	"ADPRHL1,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AA.A010.01A	13	113883695	114526317	86	-0.3402	NEUTRAL	NA	12	"ADPRHL1,ATP4B,CUL4A,DCUN1D2,GAS6,GRK1,GRTP1,LAMP1,LOC101928841,TFDP1,TMCO3,TMEM255B"
TCGA.AG.3909.01A	13	113960752	115089311	117	-0.3838	NEUTRAL	NA	16	"ADPRHL1,ATP4B,CDC16,CHAMP1,DCUN1D2,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AG.3891.01A	13	113973752	114292086	41	0.2348	NEUTRAL	NA	7	"ADPRHL1,DCUN1D2,GRTP1,LAMP1,LOC101928841,TFDP1,TMCO3"
TCGA.AZ.4684.01A	13	113974618	114806437	99	0.1708	NEUTRAL	NA	13	"ADPRHL1,ATP4B,DCUN1D2,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,RASA3,TFDP1,TMCO3,TMEM255B"
TCGA.AG.A00H.01A	13	113979873	115089311	92	0.2806	NEUTRAL	NA	15	"ADPRHL1,ATP4B,CDC16,CHAMP1,DCUN1D2,GAS6,GRK1,GRTP1,LINC00452,LOC101928841,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AF.2691	13	114011885	114086781	15	-0.094	NEUTRAL	NA	3	"ADPRHL1,GRTP1,LOC101928841"
TCGA.AA.3842	13	114086781	115106995	182	0.1058	NEUTRAL	NA	13	"ADPRHL1,ATP4B,CDC16,CHAMP1,DCUN1D2,GAS6,GRK1,LINC00452,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AA.3681	13	114257909	115106995	125	-0.0682	NEUTRAL	NA	10	"ATP4B,CDC16,CHAMP1,GAS6,GRK1,LINC00452,RASA3,TFDP1,TMEM255B,UPF3A"
TCGA.AA.3860	13	114272885	114302501	7	-0.5129	NEUTRAL	NA	1	TFDP1
TCGA.AG.3906.01A	13	114277445	115009284	58	-0.1727	NEUTRAL	NA	8	"ATP4B,CDC16,GAS6,GRK1,LINC00452,RASA3,TFDP1,TMEM255B"
TCGA.AG.3891.01A	13	114294397	115004385	51	-0.1435	NEUTRAL	NA	8	"ATP4B,CDC16,GAS6,GRK1,LINC00452,RASA3,TFDP1,TMEM255B"
TCGA.AA.3860	13	114302621	115106995	108	0.0501	NEUTRAL	NA	9	"ATP4B,CDC16,CHAMP1,GAS6,GRK1,LINC00452,RASA3,TMEM255B,UPF3A"
TCGA.AA.A01Q.01A	13	114321650	115089311	68	-0.1305	NEUTRAL	NA	8	"CDC16,CHAMP1,GAS6,GRK1,LINC00452,RASA3,TMEM255B,UPF3A"
TCGA.AA.A01S	13	114468002	115106995	103	-0.02625	NEUTRAL	NA	7	"CDC16,CHAMP1,GAS6,LINC00452,RASA3,TMEM255B,UPF3A"
TCGA.AG.A011.01A	13	114503757	114535271	5	-0.4742	NEUTRAL	NA	2	"GAS6,TMEM255B"
TCGA.AG.4009.01A	13	114514679	115089311	53	-0.0749	NEUTRAL	NA	7	"CDC16,CHAMP1,GAS6,LINC00452,RASA3,TMEM255B,UPF3A"
TCGA.AG.A011.01A	13	114541007	115089311	39	0.243	NEUTRAL	NA	6	"CDC16,CHAMP1,GAS6,LINC00452,RASA3,UPF3A"
TCGA.AA.3980.01A	13	114761959	115009284	26	-0.3725	NEUTRAL	NA	2	"CDC16,RASA3"
TCGA.AG.3611.01A	13	114776589	115037607	32	-0.0949	NEUTRAL	NA	2	"CDC16,RASA3"
TCGA.AZ.4684.01A	13	114817489	115064274	25	-0.308	NEUTRAL	NA	3	"CDC16,RASA3,UPF3A"
TCGA.AA.A024.01A	13	114839148	115089311	24	0.1511	NEUTRAL	NA	4	"CDC16,CHAMP1,RASA3,UPF3A"
TCGA.AM.5820	13	114984882	115106995	21	-0.1147	NEUTRAL	NA	3	"CDC16,CHAMP1,UPF3A"
TCGA.AG.3891.01A	13	115004807	115089311	21	0.3589	NEUTRAL	NA	3	"CDC16,CHAMP1,UPF3A"
TCGA.AA.3980.01A	13	115010325	115089311	18	0.0334	NEUTRAL	NA	3	"CDC16,CHAMP1,UPF3A"
TCGA.AG.3906.01A	13	115010325	115089311	17	0.3696	NEUTRAL	NA	3	"CDC16,CHAMP1,UPF3A"
TCGA.AG.3611.01A	13	115048261	115089311	7	0.2637	NEUTRAL	NA	2	"CHAMP1,UPF3A"
TCGA.CK.5914.01A	13	115048261	115089311	7	-0.1985	NEUTRAL	NA	2	"CHAMP1,UPF3A"
TCGA.AG.A01Y	13	115075316	115106995	4	0.0517	NEUTRAL	NA	1	CHAMP1
TCGA.AG.3882	13	115086043	115106995	2	-0.0185	NEUTRAL	NA	1	CHAMP1
TCGA.AG.A01W.01A	14	18447545	19864390	37	0.2661	NEUTRAL	NA	2	"OR11H12,POTEG"
TCGA.AG.A036.01A	14	18447545	106353795	5672	-0.1712	NEUTRAL	NA	588	Too-Many
TCGA.F5.6811.01A	14	18447557	44785659	1491	-0.3633	NEUTRAL	NA	193	Too-Many
TCGA.DC.6160.01A	14	18447557	105440430	5522	0.0555	NEUTRAL	NA	574	Too-Many
TCGA.CK.4952.01A	14	18447557	106353796	5594	-0.1066	NEUTRAL	NA	588	Too-Many
TCGA.AA.A02K.01A	14	19377545	105692386	5500	-0.3556	NEUTRAL	NA	580	Too-Many
TCGA.AZ.4684.01A	14	19377557	19558943	4	0.1874	NEUTRAL	NA	2	"OR11H12,POTEG"
TCGA.AF.3914.01A	14	19377557	20010070	5	-0.307	NEUTRAL	NA	3	"OR11H12,POTEG,POTEM"
TCGA.AG.A015.01A	14	19377557	20710924	22	-0.2139	NEUTRAL	NA	18	"OR11G2,OR11H12,OR11H2,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM"
TCGA.AA.A00D.01A	14	19377557	20757749	17	0.0354	NEUTRAL	NA	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AA.A02H.01A	14	19377557	20760095	24	0.237	NEUTRAL	NA	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AG.3909.01A	14	19377557	20763830	25	0.1765	NEUTRAL	NA	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AA.A02E.01A	14	19377557	20764481	26	-0.2008	NEUTRAL	NA	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AA.3930.01A	14	19377557	20768798	29	-0.2348	NEUTRAL	NA	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AG.A01N.01A	14	19377557	20769945	30	0.1154	NEUTRAL	NA	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.CK.5914.01A	14	19377557	20773970	33	-0.0176	NEUTRAL	NA	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AG.A01L.01A	14	19377557	20794549	35	0.3459	NEUTRAL	NA	21	"CCNB1IP1,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AA.3967.01A	14	19377557	20811727	37	-0.1885	NEUTRAL	NA	21	"CCNB1IP1,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AA.A01Q.01A	14	19377557	20840844	35	0.0921	NEUTRAL	NA	23	"CCNB1IP1,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,PARP2,POTEG,POTEM,TEP1,TTC5"
TCGA.AG.A02G.01A	14	19377557	21462912	131	-0.3556	NEUTRAL	NA	42	"ANG,APEX1,CCNB1IP1,EDDM3A,EDDM3B,KLHL33,METTL17,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR6S1,OSGEP,PARP2,PNP,POTEG,POTEM,RNASE1,RNASE10,RNASE11,RNASE12,RNASE2,RNASE3,RNASE4,RNASE6,RNASE9,TEP1,TMEM55B,TTC5"
TCGA.AG.3906.01A	14	19377557	21547003	169	0.1647	NEUTRAL	NA	49	"ANG,APEX1,ARHGEF40,CCNB1IP1,EDDM3A,EDDM3B,KLHL33,METTL17,NDRG2,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR6S1,OSGEP,PARP2,PNP,POTEG,POTEM,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,SLC39A2,TEP1,TMEM55B,TPPP2,TTC5"
TCGA.AA.A00A.01A	14	19377557	21623084	166	0.1843	NEUTRAL	NA	51	"ANG,APEX1,ARHGEF40,CCNB1IP1,EDDM3A,EDDM3B,KLHL33,METTL17,NDRG2,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR6S1,OSGEP,PARP2,PNP,POTEG,POTEM,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,SLC39A2,TEP1,TMEM253,TMEM55B,TPPP2,TTC5,ZNF219"
TCGA.AA.A01F.01A	14	19377557	21897086	193	-0.336	NEUTRAL	NA	56	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,NDRG2,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,PARP2,PNP,POTEG,POTEM,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TPPP2,TTC5,ZNF219"
TCGA.AA.A00F.01A	14	19377557	21990819	220	-0.1406	NEUTRAL	NA	60	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,PARP2,PNP,POTEG,POTEM,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.A01I.01A	14	19377557	23389819	356	-0.2789	NEUTRAL	NA	73	"ABHD4,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,NDRG2,OR10G2,OR10G3,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,OXA1L,PARP2,PNP,POTEG,POTEM,PRMT5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SLC7A7,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.A023.01A	14	19377557	23389819	356	-0.1484	NEUTRAL	NA	73	"ABHD4,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,NDRG2,OR10G2,OR10G3,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,OXA1L,PARP2,PNP,POTEG,POTEM,PRMT5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SLC7A7,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3611.01A	14	19377557	23398304	282	0.0973	NEUTRAL	NA	73	"ABHD4,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,NDRG2,OR10G2,OR10G3,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,OXA1L,PARP2,PNP,POTEG,POTEM,PRMT5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SLC7A7,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3862.01A	14	19377557	23518187	407	0.152	NEUTRAL	NA	79	"ABHD4,AJUBA,ANG,APEX1,ARHGEF40,C14orf93,CCNB1IP1,CDH24,CHD8,DAD1,EDDM3A,EDDM3B,HAUS4,HNRNPC,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,NDRG2,OR10G2,OR10G3,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,OXA1L,PARP2,PNP,POTEG,POTEM,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SLC7A7,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.A032.01A	14	19377557	23852384	454	-0.4655	NEUTRAL	NA	94	"ABHD4,ACIN1,AJUBA,ANG,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,NDRG2,OR10G2,OR10G3,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,POTEG,POTEM,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3605.01A	14	19377557	24035232	21	-0.2901	NEUTRAL	NA	99	"ABHD4,ACIN1,AJUBA,ANG,AP1G2,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,MYH7,NDRG2,NGDN,OR10G2,OR10G3,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,POTEG,POTEM,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,THTPA,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZFHX2,ZNF219"
TCGA.AG.A014.01A	14	19377557	24842360	775	0.279	NEUTRAL	NA	135	Too-Many
TCGA.A6.3810.01A	14	19377557	24906202	864	-0.3073	NEUTRAL	NA	138	Too-Many
TCGA.CK.4948.01B	14	19377557	34931265	1110	-0.073	NEUTRAL	NA	162	Too-Many
TCGA.AA.3509.01A	14	19377557	34993876	1107	-0.0123	NEUTRAL	NA	163	Too-Many
TCGA.AG.A011.01A	14	19377557	35872308	1121	0.0651	NEUTRAL	NA	172	Too-Many
TCGA.AG.A008.01A	14	19377557	53385794	1819	0.152	NEUTRAL	NA	239	Too-Many
TCGA.DM.A28M.01A	14	19377557	54903035	1942	0.1714	NEUTRAL	NA	243	Too-Many
TCGA.AA.3861.01A	14	19377557	64447350	2444	0.0464	NEUTRAL	NA	300	Too-Many
TCGA.AA.A02F.01A	14	19377557	75469991	3138	0.0334	NEUTRAL	NA	395	Too-Many
TCGA.AA.A024.01A	14	19377557	93117917	4136	0.0083	NEUTRAL	NA	470	Too-Many
TCGA.AA.3939.01A	14	19377557	104462028	5174	-0.1984	NEUTRAL	NA	562	Too-Many
TCGA.AA.A00K.01A	14	19377557	107178790	4384	0.2279	NEUTRAL	NA	588	Too-Many
TCGA.AA.3815.01A	14	19377557	107282751	5431	-0.0019	NEUTRAL	NA	588	Too-Many
TCGA.AA.3980.01A	14	19377557	107282751	5527	-0.1574	NEUTRAL	NA	588	Too-Many
TCGA.AA.A004.01A	14	19377557	107282751	4820	-0.1374	NEUTRAL	NA	588	Too-Many
TCGA.AA.A017.01A	14	19377557	107282751	4919	-0.4846	NEUTRAL	NA	588	Too-Many
TCGA.AA.A01C.01A	14	19377557	107282751	5037	-0.056	NEUTRAL	NA	588	Too-Many
TCGA.AA.A01D.01A	14	19377557	107282751	4792	0.109	NEUTRAL	NA	588	Too-Many
TCGA.AA.A029.01A	14	19377557	107282751	4887	-0.2259	NEUTRAL	NA	588	Too-Many
TCGA.AA.A02J.01A	14	19377557	107282751	4776	-0.0637	NEUTRAL	NA	588	Too-Many
TCGA.AA.A02R.01A	14	19377557	107282751	4841	-0.0544	NEUTRAL	NA	588	Too-Many
TCGA.AA.A02W.01A	14	19377557	107282751	4946	0.0935	NEUTRAL	NA	588	Too-Many
TCGA.AG.A00H.01A	14	19377557	107282751	4990	-0.4323	NEUTRAL	NA	588	Too-Many
TCGA.AG.A016.01A	14	19377557	107282751	5019	-0.1241	NEUTRAL	NA	588	Too-Many
TCGA.AG.A02X.01A	14	19377557	107282751	5035	0.1404	NEUTRAL	NA	588	Too-Many
TCGA.AY.A54L.01A	14	19377557	107282751	5594	-0.089	NEUTRAL	NA	588	Too-Many
TCGA.CM.4744.01A	14	19377557	107282751	5597	-0.0511	NEUTRAL	NA	588	Too-Many
TCGA.CM.4750.01A	14	19377557	107282751	5600	-0.1153	NEUTRAL	NA	588	Too-Many
TCGA.CM.6165.01A	14	19377557	107282751	5600	-0.0198	NEUTRAL	NA	588	Too-Many
TCGA.DM.A282.01A	14	19377557	107282751	5595	-0.002	NEUTRAL	NA	588	Too-Many
TCGA.AG.A01W.01A	14	19892810	20580961	109	-0.2479	NEUTRAL	NA	12	"OR11H2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4Q3,POTEM"
TCGA.AA.A010.01A	14	20215595	20710924	15	-0.1562	NEUTRAL	NA	14	"OR11G2,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3"
TCGA.AA.A00Q.01A	14	20215595	23874235	410	-0.1088	NEUTRAL	NA	90	"ABHD4,ACIN1,AJUBA,ANG,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.A6.3808.01A	14	20215595	24901722	854	-0.1416	NEUTRAL	NA	134	Too-Many
TCGA.AH.6549.01A	14	20215595	107282751	5567	-0.3989	NEUTRAL	NA	584	Too-Many
TCGA.DM.A1HB	14	20224002	20264018	4	0.3041	NEUTRAL	NA	1	OR4M1
TCGA.AA.3952	14	20224002	20281463	5	-0.4993	NEUTRAL	NA	2	"OR4M1,OR4N2"
TCGA.AA.3516	14	20224002	20310922	7	-0.0245	NEUTRAL	NA	2	"OR4M1,OR4N2"
TCGA.AF.2690	14	20224002	20348471	10	-0.4898	NEUTRAL	NA	3	"OR4K2,OR4M1,OR4N2"
TCGA.AA.3558	14	20224002	20362819	11	-0.4316	NEUTRAL	NA	3	"OR4K2,OR4M1,OR4N2"
TCGA.AG.3584	14	20224002	20362819	11	-0.4599	NEUTRAL	NA	3	"OR4K2,OR4M1,OR4N2"
TCGA.DT.5265	14	20224002	20362819	11	-0.3341	NEUTRAL	NA	3	"OR4K2,OR4M1,OR4N2"
TCGA.A6.6648	14	20224002	20389720	11	-0.1929	NEUTRAL	NA	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AA.3518	14	20224002	20389720	12	0.0785	NEUTRAL	NA	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.EI.6511	14	20224002	20389720	12	-0.3139	NEUTRAL	NA	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.F5.6864	14	20224002	20389720	12	-0.4732	NEUTRAL	NA	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AY.6196	14	20224002	20417540	12	-0.4816	NEUTRAL	NA	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AF.6655	14	20224002	20419258	14	-0.2459	NEUTRAL	NA	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.D5.6539	14	20224002	20424925	17	-0.4558	NEUTRAL	NA	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AZ.6599	14	20224002	20433043	22	0.3656	NEUTRAL	NA	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AF.2693	14	20224002	20521059	43	0.1041	NEUTRAL	NA	8	"OR4K1,OR4K13,OR4K14,OR4K15,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AA.3941	14	20224002	20636771	74	-0.3347	NEUTRAL	NA	11	"OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5"
TCGA.AA.3982	14	20224002	20732545	117	-0.3518	NEUTRAL	NA	14	"OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5"
TCGA.AA.3844	14	20224002	20796877	137	-0.24	NEUTRAL	NA	16	"CCNB1IP1,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,TTC5"
TCGA.AA.3524	14	20224002	21150107	333	-0.4955	NEUTRAL	NA	28	"APEX1,CCNB1IP1,KLHL33,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR6S1,OSGEP,PARP2,PNP,RNASE10,RNASE11,RNASE12,RNASE9,TEP1,TMEM55B,TTC5"
TCGA.AG.3901	14	20224002	21460159	462	0.0387	NEUTRAL	NA	37	"ANG,APEX1,CCNB1IP1,EDDM3A,EDDM3B,KLHL33,METTL17,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR6S1,OSGEP,PARP2,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE2,RNASE3,RNASE4,RNASE6,RNASE9,TEP1,TMEM55B,TTC5"
TCGA.AA.3560	14	20224002	22261183	704	-0.2031	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3837	14	20224002	22261183	705	0.0458	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3855	14	20224002	22261183	704	0.0534	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3976	14	20224002	22261183	704	-0.4333	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3575	14	20224002	22261183	705	-0.0026	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3885	14	20224002	22267490	706	-0.0606	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3850	14	20224002	22338140	741	0.19235	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3599	14	20224002	22343129	746	0.1036	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3556	14	20224002	22354102	756	-0.1155	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3685	14	20224002	22368850	757	-0.1532	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3841	14	20224002	22368850	758	-0.2994	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3696	14	20224002	22377372	765	-0.0126	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3852	14	20224002	22377372	764	0.3709	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3678	14	20224002	22377904	766	-0.4906	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3692	14	20224002	22378707	767	0.0585	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3856	14	20224002	22390184	783	0.0701	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3902	14	20224002	22397142	792	0.0333	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3580	14	20224002	22410619	797	0.0618	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3728	14	20224002	22413784	799	0.0437	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3955	14	20224002	22427925	806	0.1294	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3881	14	20224002	22428363	804	0.0624	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3966	14	20224002	22450155	811	0.0967	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3543	14	20224002	22454286	812	0.1037	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AY.A8YK	14	20224002	22466883	815	-0.4168	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3858	14	20224002	22476389	822	0.011	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3544	14	20224002	22478960	824	0.1067	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3673	14	20224002	22478960	822	-0.009	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3675	14	20224002	22478960	823	0.0612	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3679	14	20224002	22479596	825	0.0657	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.EI.6509	14	20224002	22481704	830	-0.0441	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.A02Y	14	20224002	22481789	831	0.0095	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3866	14	20224002	22514388	841	0.1473	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.RU.A8FL	14	20224002	22534989	846	-0.0182	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3872	14	20224002	22549609	853	0.0243	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3846	14	20224002	22553001	854	-0.3323	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3680	14	20224002	22561465	854	0.0711	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3725	14	20224002	22576413	868	0.0036	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.A6.2683	14	20224002	22580761	873	-0.2819	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3831	14	20224002	22613689	905	0.0915	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3971	14	20224002	22613689	902	-0.3987	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3842	14	20224002	22617414	908	-0.0055	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3870	14	20224002	22617414	906	0.0816	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3968	14	20224002	22617414	907	-0.2757	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3845	14	20224002	22623631	909	0.0896	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3950	14	20224002	22623631	909	0.1121	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3684	14	20224002	22626947	911	0.0627	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3821	14	20224002	22626947	912	0.0595	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3877	14	20224002	22626947	911	0.0733	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3949	14	20224002	22626947	911	0.0886	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3984	14	20224002	22626947	910	0.1359	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3710	14	20224002	22628153	912	0.0793	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3869	14	20224002	22628153	912	0.1207	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3875	14	20224002	22630151	914	-0.0759	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.A6.6137	14	20224002	22717253	964	0.029	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3529	14	20224002	22895874	1048	0.0037	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AZ.4614	14	20224002	22895874	1038	-0.0999	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.A6.6649	14	20224002	23076905	1151	0.1759	NEUTRAL	NA	60	"ABHD4,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.A6.6141	14	20224002	23091695	1152	-0.001	NEUTRAL	NA	60	"ABHD4,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AY.A71X	14	20224002	23092104	1152	0.0469	NEUTRAL	NA	60	"ABHD4,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AF.A56L	14	20224002	23094844	1152	-0.1098	NEUTRAL	NA	60	"ABHD4,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.DM.A28C	14	20224002	23841176	1341	0.0101	NEUTRAL	NA	86	"ABHD4,ACIN1,AJUBA,ANG,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,DAD1,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.CK.6747	14	20224002	24033069	1406	0.0338	NEUTRAL	NA	94	"ABHD4,ACIN1,AJUBA,ANG,AP1G2,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,MYH7,NDRG2,NGDN,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,THTPA,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZFHX2,ZNF219"
TCGA.A6.2686	14	20224002	24121330	1441	0.0291	NEUTRAL	NA	96	"ABHD4,ACIN1,AJUBA,ANG,AP1G2,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,DHRS2,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,JPH4,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,MYH7,NDRG2,NGDN,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,THTPA,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZFHX2,ZNF219"
TCGA.A6.6142	14	20224002	24425057	1550	-0.28	NEUTRAL	NA	97	"ABHD4,ACIN1,AJUBA,ANG,AP1G2,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,DHRS2,DHRS4,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,JPH4,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,MYH7,NDRG2,NGDN,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,THTPA,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZFHX2,ZNF219"
TCGA.AA.3492	14	20224002	24425057	1552	0.0381	NEUTRAL	NA	97	"ABHD4,ACIN1,AJUBA,ANG,AP1G2,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,DHRS2,DHRS4,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,JPH4,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,MYH7,NDRG2,NGDN,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,THTPA,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZFHX2,ZNF219"
TCGA.D5.6924	14	20224002	24425057	1550	-0.2765	NEUTRAL	NA	97	"ABHD4,ACIN1,AJUBA,ANG,AP1G2,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,DHRS2,DHRS4,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,JPH4,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,MYH7,NDRG2,NGDN,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,THTPA,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZFHX2,ZNF219"
TCGA.DM.A285	14	20224002	26581908	2338	-0.5095	NEUTRAL	NA	139	Too-Many
TCGA.F5.6465	14	20224002	28128593	2814	-0.0012	NEUTRAL	NA	140	Too-Many
TCGA.AD.6965	14	20224002	28339742	2844	0.0651	NEUTRAL	NA	140	Too-Many
TCGA.QL.A97D	14	20224002	28629230	2918	-0.1133	NEUTRAL	NA	140	Too-Many
TCGA.A6.5667	14	20224002	28740797	2932	0.0973	NEUTRAL	NA	140	Too-Many
TCGA.A6.2681	14	20224002	29430123	3095	0.1063	NEUTRAL	NA	141	Too-Many
TCGA.AA.3986	14	20224002	32414264	3813	0.027	NEUTRAL	NA	152	Too-Many
TCGA.AF.6672	14	20224002	32653526	3888	-0.3941	NEUTRAL	NA	153	Too-Many
TCGA.AD.6901	14	20224002	33281500	4139	-0.2695	NEUTRAL	NA	154	Too-Many
TCGA.EI.6512	14	20224002	33535923	4277	0.242	NEUTRAL	NA	155	Too-Many
TCGA.DM.A1D8	14	20224002	33616635	4313	-0.4157	NEUTRAL	NA	155	Too-Many
TCGA.D5.7000	14	20224002	33820907	4416	0.0098	NEUTRAL	NA	155	Too-Many
TCGA.CK.6748	14	20224002	35806968	5166	-0.3901	NEUTRAL	NA	166	Too-Many
TCGA.AA.3712	14	20224002	36241713	5251	0.0267	NEUTRAL	NA	169	Too-Many
TCGA.F4.6856	14	20224002	37176927	5604	0.0106	NEUTRAL	NA	176	Too-Many
TCGA.NH.A6GC	14	20224002	39870142	6369	0.3493	NEUTRAL	NA	187	Too-Many
TCGA.AA.3526	14	20224002	39964334	6402	-0.015	NEUTRAL	NA	187	Too-Many
TCGA.DM.A28F	14	20224002	40187570	6452	0.0083	NEUTRAL	NA	187	Too-Many
TCGA.F4.6704	14	20224002	41606898	6891	0.173	NEUTRAL	NA	187	Too-Many
TCGA.DC.4749	14	20224002	45185839	7841	-0.4429	NEUTRAL	NA	189	Too-Many
TCGA.F4.6459	14	20224002	45878044	7943	0.0159	NEUTRAL	NA	196	Too-Many
TCGA.G4.6307	14	20224002	45878044	7940	0.303	NEUTRAL	NA	196	Too-Many
TCGA.G4.6320	14	20224002	45878044	7943	0.0091	NEUTRAL	NA	196	Too-Many
TCGA.CM.4748	14	20224002	47052373	8211	0.0015	NEUTRAL	NA	196	Too-Many
TCGA.G4.6317	14	20224002	47696064	8387	0.0327	NEUTRAL	NA	198	Too-Many
TCGA.AZ.5403	14	20224002	54612798	10667	0.0388	NEUTRAL	NA	236	Too-Many
TCGA.QG.A5YW	14	20224002	57200393	11631	0.3335	NEUTRAL	NA	253	Too-Many
TCGA.DM.A1HA	14	20224002	60082403	12713	0.0353	NEUTRAL	NA	273	Too-Many
TCGA.F4.6807	14	20224002	61000491	12854	0.0095	NEUTRAL	NA	278	Too-Many
TCGA.DC.4745	14	20224002	64130694	13932	-0.0356	NEUTRAL	NA	293	Too-Many
TCGA.F5.6814	14	20224002	66755046	14624	0.029	NEUTRAL	NA	311	Too-Many
TCGA.AF.5654	14	20224002	68632825	14974	0.0003	NEUTRAL	NA	326	Too-Many
TCGA.EI.7002	14	20224002	68736470	15012	-0.4537	NEUTRAL	NA	326	Too-Many
TCGA.DC.6681	14	20224002	68805450	15042	0.0186	NEUTRAL	NA	326	Too-Many
TCGA.A6.2679	14	20224002	71172235	15904	-0.063	NEUTRAL	NA	347	Too-Many
TCGA.A6.5661	14	20224002	72467630	16232	0.035	NEUTRAL	NA	351	Too-Many
TCGA.CM.6675	14	20224002	73188700	16628	0.0144	NEUTRAL	NA	352	Too-Many
TCGA.DM.A0XF	14	20224002	73213813	16674	-0.496	NEUTRAL	NA	352	Too-Many
TCGA.AF.A56K	14	20224002	73689718	16788	-0.0082	NEUTRAL	NA	356	Too-Many
TCGA.AY.6197	14	20224002	75101707	16790	0.0144	NEUTRAL	NA	382	Too-Many
TCGA.EI.6883	14	20224002	76519804	17516	-0.0016	NEUTRAL	NA	403	Too-Many
TCGA.A6.2682	14	20224002	77435050	17609	0.0051	NEUTRAL	NA	408	Too-Many
TCGA.DM.A28H	14	20224002	79993105	18886	0.0067	NEUTRAL	NA	428	Too-Many
TCGA.AZ.4681	14	20224002	81005358	19260	-0.0055	NEUTRAL	NA	430	Too-Many
TCGA.DY.A1DC	14	20224002	81519861	19369	0.0142	NEUTRAL	NA	431	Too-Many
TCGA.CM.5341	14	20224002	83328788	19984	0.0273	NEUTRAL	NA	434	Too-Many
TCGA.G4.6586	14	20224002	84017913	20257	0.0066	NEUTRAL	NA	434	Too-Many
TCGA.G4.6322	14	20224002	88009623	21530	0.0179	NEUTRAL	NA	435	Too-Many
TCGA.A6.2677	14	20224002	90187569	20260	-0.0178	NEUTRAL	NA	444	Too-Many
TCGA.D5.6536	14	20224002	90915365	22477	0.0061	NEUTRAL	NA	450	Too-Many
TCGA.G4.6321	14	20224002	92388308	22905	-0.0047	NEUTRAL	NA	459	Too-Many
TCGA.AM.5820	14	20224002	92957015	23127	-0.0079	NEUTRAL	NA	464	Too-Many
TCGA.F4.6570	14	20224002	95063716	23931	0.0113	NEUTRAL	NA	494	Too-Many
TCGA.G5.6235	14	20224002	95063716	23933	-0.2105	NEUTRAL	NA	494	Too-Many
TCGA.AA.3989	14	20224002	98196332	25282	-0.2687	NEUTRAL	NA	510	Too-Many
TCGA.G4.6302	14	20224002	98237765	25306	0	NEUTRAL	NA	510	Too-Many
TCGA.AF.3913	14	20224002	100607359	26350	-0.0449	NEUTRAL	NA	519	Too-Many
TCGA.5M.AAT4	14	20224002	101910777	26792	-0.0451	NEUTRAL	NA	528	Too-Many
TCGA.DM.A1D9	14	20224002	104668825	27282	-0.3719	NEUTRAL	NA	559	Too-Many
TCGA.3L.AA1B	14	20224002	107285436	27538	-0.0582	NEUTRAL	NA	583	Too-Many
TCGA.4T.AA8H	14	20224002	107285436	27538	-0.0093	NEUTRAL	NA	583	Too-Many
TCGA.5M.AAT6	14	20224002	107285436	27535	-0.0006	NEUTRAL	NA	583	Too-Many
TCGA.5M.AATA	14	20224002	107285436	27521	-0.4666	NEUTRAL	NA	583	Too-Many
TCGA.5M.AATE	14	20224002	107285436	27541	-0.3463	NEUTRAL	NA	583	Too-Many
TCGA.A6.2672	14	20224002	107285436	27457	-0.0604	NEUTRAL	NA	583	Too-Many
TCGA.A6.2680	14	20224002	107285436	27504	-0.3585	NEUTRAL	NA	583	Too-Many
TCGA.A6.2684	14	20224002	107285436	25230	-0.0338	NEUTRAL	NA	583	Too-Many
TCGA.A6.2685	14	20224002	107285436	27505	-0.0002	NEUTRAL	NA	583	Too-Many
TCGA.A6.3809	14	20224002	107285436	25229	0	NEUTRAL	NA	583	Too-Many
TCGA.A6.4105	14	20224002	107285436	27556	-0.2696	NEUTRAL	NA	583	Too-Many
TCGA.A6.4107	14	20224002	107285436	27533	-0.1971	NEUTRAL	NA	583	Too-Many
TCGA.A6.5659	14	20224002	107285436	25193	-0.0702	NEUTRAL	NA	583	Too-Many
TCGA.A6.5660	14	20224002	107285436	27452	-0.046	NEUTRAL	NA	583	Too-Many
TCGA.A6.5664	14	20224002	107285436	27490	-0.001	NEUTRAL	NA	583	Too-Many
TCGA.A6.5665	14	20224002	107285436	27472	-0.0346	NEUTRAL	NA	583	Too-Many
TCGA.A6.5666	14	20224002	107285436	27515	0	NEUTRAL	NA	583	Too-Many
TCGA.A6.6650	14	20224002	107285436	25193	-0.4904	NEUTRAL	NA	583	Too-Many
TCGA.A6.6651	14	20224002	107285436	27450	-0.0871	NEUTRAL	NA	583	Too-Many
TCGA.A6.6654	14	20224002	107285436	27472	-0.0923	NEUTRAL	NA	583	Too-Many
TCGA.A6.6781	14	20224002	107285436	25176	0.0008	NEUTRAL	NA	583	Too-Many
TCGA.A6.6782	14	20224002	107285436	27460	-0.4937	NEUTRAL	NA	583	Too-Many
TCGA.A6.A565	14	20224002	107285436	27355	-0.0068	NEUTRAL	NA	583	Too-Many
TCGA.A6.A566	14	20224002	107285436	27320	0.0063	NEUTRAL	NA	583	Too-Many
TCGA.A6.A56B	14	20224002	107285436	27378	-0.0042	NEUTRAL	NA	583	Too-Many
TCGA.AA.3488	14	20224002	107285436	27537	-0.473	NEUTRAL	NA	583	Too-Many
TCGA.AA.3494	14	20224002	107285436	27535	-0.0011	NEUTRAL	NA	583	Too-Many
TCGA.AA.3495	14	20224002	107285436	27537	-0.0069	NEUTRAL	NA	583	Too-Many
TCGA.AA.3496	14	20224002	107285436	27463	-0.0116	NEUTRAL	NA	583	Too-Many
TCGA.AA.3502	14	20224002	107285436	27537	-0.0014	NEUTRAL	NA	583	Too-Many
TCGA.AA.3510	14	20224002	107285436	27533	-0.0022	NEUTRAL	NA	583	Too-Many
TCGA.AA.3514	14	20224002	107285436	27542	-0.0084	NEUTRAL	NA	583	Too-Many
TCGA.AA.3522	14	20224002	107285436	27537	0.0085	NEUTRAL	NA	583	Too-Many
TCGA.AA.3527	14	20224002	107285436	27539	-0.0009	NEUTRAL	NA	583	Too-Many
TCGA.AA.3531	14	20224002	107285436	27540	-0.5038	NEUTRAL	NA	583	Too-Many
TCGA.AA.3532	14	20224002	107285436	27538	-0.0083	NEUTRAL	NA	583	Too-Many
TCGA.AA.3534	14	20224002	107285436	27542	-0.0063	NEUTRAL	NA	583	Too-Many
TCGA.AA.3655	14	20224002	107285436	27547	-0.002	NEUTRAL	NA	583	Too-Many
TCGA.AA.3660	14	20224002	107285436	27543	0.2698	NEUTRAL	NA	583	Too-Many
TCGA.AA.3662	14	20224002	107285436	27545	-0.0057	NEUTRAL	NA	583	Too-Many
TCGA.AA.3663	14	20224002	107285436	27481	0.0007	NEUTRAL	NA	583	Too-Many
TCGA.AA.3697	14	20224002	107285436	27528	-0.2957	NEUTRAL	NA	583	Too-Many
TCGA.AA.3713	14	20224002	107285436	27536	0	NEUTRAL	NA	583	Too-Many
TCGA.AA.3994	14	20224002	107285436	27515	-0.0191	NEUTRAL	NA	583	Too-Many
TCGA.AA.A01P	14	20224002	107285436	27513	0	NEUTRAL	NA	583	Too-Many
TCGA.AA.A01R	14	20224002	107285436	27538	0.0012	NEUTRAL	NA	583	Too-Many
TCGA.AA.A01S	14	20224002	107285436	27540	-0.00805	NEUTRAL	NA	583	Too-Many
TCGA.AA.A01V	14	20224002	107285436	27537	0.0118	NEUTRAL	NA	583	Too-Many
TCGA.AA.A01X	14	20224002	107285436	27511	-0.3745	NEUTRAL	NA	583	Too-Many
TCGA.AA.A01Z	14	20224002	107285436	27532	-0.0033	NEUTRAL	NA	583	Too-Many
TCGA.AA.A022	14	20224002	107285436	27505	0.0068	NEUTRAL	NA	583	Too-Many
TCGA.AA.A03F	14	20224002	107285436	27531	-0.0034	NEUTRAL	NA	583	Too-Many
TCGA.AA.A03J	14	20224002	107285436	26991	-0.3022	NEUTRAL	NA	583	Too-Many
TCGA.AD.5900	14	20224002	107285436	27487	0	NEUTRAL	NA	583	Too-Many
TCGA.AD.6548	14	20224002	107285436	27462	-0.0048	NEUTRAL	NA	583	Too-Many
TCGA.AD.6888	14	20224002	107285436	27518	-0.0074	NEUTRAL	NA	583	Too-Many
TCGA.AD.6889	14	20224002	107285436	27511	0	NEUTRAL	NA	583	Too-Many
TCGA.AD.6890	14	20224002	107285436	27514	0.1178	NEUTRAL	NA	583	Too-Many
TCGA.AD.6895	14	20224002	107285436	27517	-0.0014	NEUTRAL	NA	583	Too-Many
TCGA.AD.6899	14	20224002	107285436	27464	-0.0954	NEUTRAL	NA	583	Too-Many
TCGA.AD.6963	14	20224002	107285436	27521	-0.2401	NEUTRAL	NA	583	Too-Many
TCGA.AD.6964	14	20224002	107285436	27512	0.0006	NEUTRAL	NA	583	Too-Many
TCGA.AD.A5EJ	14	20224002	107285436	27380	0.0034	NEUTRAL	NA	583	Too-Many
TCGA.AD.A5EK	14	20224002	107285436	27354	-0.035	NEUTRAL	NA	583	Too-Many
TCGA.AF.2687	14	20224002	107285436	27476	-0.0047	NEUTRAL	NA	583	Too-Many
TCGA.AF.2691	14	20224002	107285436	27541	0.0249	NEUTRAL	NA	583	Too-Many
TCGA.AF.3911	14	20224002	107285436	27542	-0.4546	NEUTRAL	NA	583	Too-Many
TCGA.AF.4110	14	20224002	107285436	27544	0.0228	NEUTRAL	NA	583	Too-Many
TCGA.AF.6136	14	20224002	107285436	27509	0.2052	NEUTRAL	NA	583	Too-Many
TCGA.AG.3592	14	20224002	107285436	27552	-0.488	NEUTRAL	NA	583	Too-Many
TCGA.AG.3612	14	20224002	107285436	27388	0.0416	NEUTRAL	NA	583	Too-Many
TCGA.AG.3732	14	20224002	107285436	27454	0.0147	NEUTRAL	NA	583	Too-Many
TCGA.AG.3887	14	20224002	107285436	27460	0.0037	NEUTRAL	NA	583	Too-Many
TCGA.AG.3890	14	20224002	107285436	27467	-0.3402	NEUTRAL	NA	583	Too-Many
TCGA.AG.3892	14	20224002	107285436	27473	0.0008	NEUTRAL	NA	583	Too-Many
TCGA.AG.3894	14	20224002	107285436	27476	0.0016	NEUTRAL	NA	583	Too-Many
TCGA.AG.3896	14	20224002	107285436	27489	-0.0011	NEUTRAL	NA	583	Too-Many
TCGA.AG.4008	14	20224002	107285436	27390	-0.2428	NEUTRAL	NA	583	Too-Many
TCGA.AG.4015	14	20224002	107285436	27478	-0.4543	NEUTRAL	NA	583	Too-Many
TCGA.AG.4022	14	20224002	107285436	27553	-0.0446	NEUTRAL	NA	583	Too-Many
TCGA.AG.A020	14	20224002	107285436	27512	-0.0499	NEUTRAL	NA	583	Too-Many
TCGA.AG.A02N	14	20224002	107285436	27521	0.0058	NEUTRAL	NA	583	Too-Many
TCGA.AH.6544	14	20224002	107285436	27499	-0.2775	NEUTRAL	NA	583	Too-Many
TCGA.AH.6547	14	20224002	107285436	27513	-0.0053	NEUTRAL	NA	583	Too-Many
TCGA.AH.6643	14	20224002	107285436	27502	-0.0638	NEUTRAL	NA	583	Too-Many
TCGA.AH.6644	14	20224002	107285436	27480	-0.0158	NEUTRAL	NA	583	Too-Many
TCGA.AH.6897	14	20224002	107285436	27492	-0.0034	NEUTRAL	NA	583	Too-Many
TCGA.AH.6903	14	20224002	107285436	27493	0.0058	NEUTRAL	NA	583	Too-Many
TCGA.AU.6004	14	20224002	107285436	27366	-0.0071	NEUTRAL	NA	583	Too-Many
TCGA.AY.4070	14	20224002	107285436	27439	0.0039	NEUTRAL	NA	583	Too-Many
TCGA.AY.4071	14	20224002	107285436	27428	-0.3908	NEUTRAL	NA	583	Too-Many
TCGA.AY.6386	14	20224002	107285436	27535	0	NEUTRAL	NA	583	Too-Many
TCGA.AY.A69D	14	20224002	107285436	27523	-0.322	NEUTRAL	NA	583	Too-Many
TCGA.AZ.4315	14	20224002	107285436	27531	0.004	NEUTRAL	NA	583	Too-Many
TCGA.AZ.4323	14	20224002	107285436	27458	-0.0863	NEUTRAL	NA	583	Too-Many
TCGA.AZ.4615	14	20224002	107285436	27532	0.0196	NEUTRAL	NA	583	Too-Many
TCGA.AZ.4616	14	20224002	107285436	27470	0.0032	NEUTRAL	NA	583	Too-Many
TCGA.AZ.4682	14	20224002	107285436	27533	-0.1723	NEUTRAL	NA	583	Too-Many
TCGA.AZ.5407	14	20224002	107285436	27553	0	NEUTRAL	NA	583	Too-Many
TCGA.AZ.6598	14	20224002	107285436	27564	-0.0008	NEUTRAL	NA	583	Too-Many
TCGA.AZ.6600	14	20224002	107285436	27538	-0.0396	NEUTRAL	NA	583	Too-Many
TCGA.AZ.6601	14	20224002	107285436	27558	0.0017	NEUTRAL	NA	583	Too-Many
TCGA.AZ.6605	14	20224002	107285436	27465	-0.166	NEUTRAL	NA	583	Too-Many
TCGA.AZ.6606	14	20224002	107285436	27466	-0.0008	NEUTRAL	NA	583	Too-Many
TCGA.AZ.6607	14	20224002	107285436	27483	0.095	NEUTRAL	NA	583	Too-Many
TCGA.BM.6198	14	20224002	107285436	27556	-0.43765	NEUTRAL	NA	583	Too-Many
TCGA.CA.5254	14	20224002	107285436	27477	0.1067	NEUTRAL	NA	583	Too-Many
TCGA.CA.5255	14	20224002	107285436	27471	-0.1983	NEUTRAL	NA	583	Too-Many
TCGA.CA.5256	14	20224002	107285436	27347	-0.3188	NEUTRAL	NA	583	Too-Many
TCGA.CA.5796	14	20224002	107285436	27497	-0.008	NEUTRAL	NA	583	Too-Many
TCGA.CA.5797	14	20224002	107285436	27510	0.0252	NEUTRAL	NA	583	Too-Many
TCGA.CA.6716	14	20224002	107285436	27503	-0.2755	NEUTRAL	NA	583	Too-Many
TCGA.CA.6717	14	20224002	107285436	27442	0	NEUTRAL	NA	583	Too-Many
TCGA.CA.6718	14	20224002	107285436	27475	0.0076	NEUTRAL	NA	583	Too-Many
TCGA.CA.6719	14	20224002	107285436	27470	0.1922	NEUTRAL	NA	583	Too-Many
TCGA.CI.6619	14	20224002	107285436	27508	-0.1572	NEUTRAL	NA	583	Too-Many
TCGA.CI.6620	14	20224002	107285436	27492	-0.4542	NEUTRAL	NA	583	Too-Many
TCGA.CI.6621	14	20224002	107285436	27504	0.0269	NEUTRAL	NA	583	Too-Many
TCGA.CI.6623	14	20224002	107285436	27515	-0.4251	NEUTRAL	NA	583	Too-Many
TCGA.CI.6624	14	20224002	107285436	27498	-0.1492	NEUTRAL	NA	583	Too-Many
TCGA.CK.4947	14	20224002	107285436	27506	-0.0089	NEUTRAL	NA	583	Too-Many
TCGA.CK.4950	14	20224002	107285436	27310	-0.0128	NEUTRAL	NA	583	Too-Many
TCGA.CK.4951	14	20224002	107285436	27440	0.003	NEUTRAL	NA	583	Too-Many
TCGA.CK.5913	14	20224002	107285436	27511	0.0002	NEUTRAL	NA	583	Too-Many
TCGA.CK.5915	14	20224002	107285436	27490	0.1206	NEUTRAL	NA	583	Too-Many
TCGA.CK.5916	14	20224002	107285436	27478	-0.0025	NEUTRAL	NA	583	Too-Many
TCGA.CK.6746	14	20224002	107285436	27481	0.0011	NEUTRAL	NA	583	Too-Many
TCGA.CK.6751	14	20224002	107285436	27402	-0.0021	NEUTRAL	NA	583	Too-Many
TCGA.CL.4957	14	20224002	107285436	27559	-0.3927	NEUTRAL	NA	583	Too-Many
TCGA.CL.5917	14	20224002	107285436	27481	0	NEUTRAL	NA	583	Too-Many
TCGA.CM.4743	14	20224002	107285436	27537	-0.0023	NEUTRAL	NA	583	Too-Many
TCGA.CM.4746	14	20224002	107285436	27534	0	NEUTRAL	NA	583	Too-Many
TCGA.CM.4747	14	20224002	107285436	27528	-0.402	NEUTRAL	NA	583	Too-Many
TCGA.CM.4752	14	20224002	107285436	27530	-0.0073	NEUTRAL	NA	583	Too-Many
TCGA.CM.5344	14	20224002	107285436	27537	0.0228	NEUTRAL	NA	583	Too-Many
TCGA.CM.5348	14	20224002	107285436	27532	-0.011	NEUTRAL	NA	583	Too-Many
TCGA.CM.5349	14	20224002	107285436	27538	-0.0149	NEUTRAL	NA	583	Too-Many
TCGA.CM.5860	14	20224002	107285436	27495	-0.0316	NEUTRAL	NA	583	Too-Many
TCGA.CM.5861	14	20224002	107285436	27512	-0.0044	NEUTRAL	NA	583	Too-Many
TCGA.CM.5862	14	20224002	107285436	27490	0	NEUTRAL	NA	583	Too-Many
TCGA.CM.5863	14	20224002	107285436	27506	0.098	NEUTRAL	NA	583	Too-Many
TCGA.CM.5864	14	20224002	107285436	27486	0.1847	NEUTRAL	NA	583	Too-Many
TCGA.CM.5868	14	20224002	107285436	27501	-0.3564	NEUTRAL	NA	583	Too-Many
TCGA.CM.6161	14	20224002	107285436	27501	-0.0363	NEUTRAL	NA	583	Too-Many
TCGA.CM.6162	14	20224002	107285436	27434	-0.0043	NEUTRAL	NA	583	Too-Many
TCGA.CM.6163	14	20224002	107285436	27434	-0.395	NEUTRAL	NA	583	Too-Many
TCGA.CM.6164	14	20224002	107285436	27505	-0.2769	NEUTRAL	NA	583	Too-Many
TCGA.CM.6166	14	20224002	107285436	27543	-0.0216	NEUTRAL	NA	583	Too-Many
TCGA.CM.6167	14	20224002	107285436	27537	-0.0124	NEUTRAL	NA	583	Too-Many
TCGA.CM.6168	14	20224002	107285436	27534	-0.0024	NEUTRAL	NA	583	Too-Many
TCGA.CM.6169	14	20224002	107285436	27363	-0.0912	NEUTRAL	NA	583	Too-Many
TCGA.CM.6171	14	20224002	107285436	27547	-0.0046	NEUTRAL	NA	583	Too-Many
TCGA.CM.6674	14	20224002	107285436	27483	-0.0033	NEUTRAL	NA	583	Too-Many
TCGA.CM.6676	14	20224002	107285436	27451	-0.1044	NEUTRAL	NA	583	Too-Many
TCGA.CM.6677	14	20224002	107285436	27448	0.0069	NEUTRAL	NA	583	Too-Many
TCGA.CM.6678	14	20224002	107285436	27487	0.1782	NEUTRAL	NA	583	Too-Many
TCGA.CM.6679	14	20224002	107285436	27461	-0.39395	NEUTRAL	NA	583	Too-Many
TCGA.CM.6680	14	20224002	107285436	27501	-0.0597	NEUTRAL	NA	583	Too-Many
TCGA.D5.5537	14	20224002	107285436	27484	-0.4009	NEUTRAL	NA	583	Too-Many
TCGA.D5.5539	14	20224002	107285436	27503	0.2372	NEUTRAL	NA	583	Too-Many
TCGA.D5.5541	14	20224002	107285436	27541	-0.0236	NEUTRAL	NA	583	Too-Many
TCGA.D5.6529	14	20224002	107285436	27556	0	NEUTRAL	NA	583	Too-Many
TCGA.D5.6530	14	20224002	107285436	27555	-0.0015	NEUTRAL	NA	583	Too-Many
TCGA.D5.6531	14	20224002	107285436	27551	-0.0113	NEUTRAL	NA	583	Too-Many
TCGA.D5.6534	14	20224002	107285436	27482	0.0038	NEUTRAL	NA	583	Too-Many
TCGA.D5.6535	14	20224002	107285436	27553	-0.3822	NEUTRAL	NA	583	Too-Many
TCGA.D5.6537	14	20224002	107285436	27407	-0.0051	NEUTRAL	NA	583	Too-Many
TCGA.D5.6538	14	20224002	107285436	27539	0.357	NEUTRAL	NA	583	Too-Many
TCGA.D5.6540	14	20224002	107285436	27493	-0.0047	NEUTRAL	NA	583	Too-Many
TCGA.D5.6541	14	20224002	107285436	27551	-0.0071	NEUTRAL	NA	583	Too-Many
TCGA.D5.6898	14	20224002	107285436	27498	-0.0434	NEUTRAL	NA	583	Too-Many
TCGA.D5.6920	14	20224002	107285436	27482	0	NEUTRAL	NA	583	Too-Many
TCGA.D5.6922	14	20224002	107285436	27486	0.0028	NEUTRAL	NA	583	Too-Many
TCGA.D5.6923	14	20224002	107285436	27478	-0.0041	NEUTRAL	NA	583	Too-Many
TCGA.D5.6926	14	20224002	107285436	27498	0.0047	NEUTRAL	NA	583	Too-Many
TCGA.D5.6927	14	20224002	107285436	27492	-0.0036	NEUTRAL	NA	583	Too-Many
TCGA.D5.6928	14	20224002	107285436	27494	-0.0113	NEUTRAL	NA	583	Too-Many
TCGA.D5.6929	14	20224002	107285436	27500	-0.0288	NEUTRAL	NA	583	Too-Many
TCGA.D5.6930	14	20224002	107285436	27487	-0.0007	NEUTRAL	NA	583	Too-Many
TCGA.DC.5337	14	20224002	107285436	27440	-0.0069	NEUTRAL	NA	583	Too-Many
TCGA.DC.5869	14	20224002	107285436	27474	-0.2757	NEUTRAL	NA	583	Too-Many
TCGA.DC.6154	14	20224002	107285436	27489	-0.0048	NEUTRAL	NA	583	Too-Many
TCGA.DC.6155	14	20224002	107285436	27427	-0.3811	NEUTRAL	NA	583	Too-Many
TCGA.DC.6157	14	20224002	107285436	27301	-0.4111	NEUTRAL	NA	583	Too-Many
TCGA.DC.6158	14	20224002	107285436	27458	-0.2996	NEUTRAL	NA	583	Too-Many
TCGA.DC.6682	14	20224002	107285436	27513	-0.1595	NEUTRAL	NA	583	Too-Many
TCGA.DC.6683	14	20224002	107285436	27483	-0.3308	NEUTRAL	NA	583	Too-Many
TCGA.DM.A0X9	14	20224002	107285436	27539	-0.0023	NEUTRAL	NA	583	Too-Many
TCGA.DM.A0XD	14	20224002	107285436	27437	0.0033	NEUTRAL	NA	583	Too-Many
TCGA.DM.A1D0	14	20224002	107285436	27413	-0.0195	NEUTRAL	NA	583	Too-Many
TCGA.DM.A1D4	14	20224002	107285436	27552	0.0044	NEUTRAL	NA	583	Too-Many
TCGA.DM.A1D7	14	20224002	107285436	27554	-0.059	NEUTRAL	NA	583	Too-Many
TCGA.DM.A1DA	14	20224002	107285436	27543	-0.1189	NEUTRAL	NA	583	Too-Many
TCGA.DM.A280	14	20224002	107285436	27489	-0.0013	NEUTRAL	NA	583	Too-Many
TCGA.DM.A288	14	20224002	107285436	27472	-0.5126	NEUTRAL	NA	583	Too-Many
TCGA.DM.A28A	14	20224002	107285436	27503	0.0007	NEUTRAL	NA	583	Too-Many
TCGA.DM.A28G	14	20224002	107285436	27512	-0.0076	NEUTRAL	NA	583	Too-Many
TCGA.DM.A28K	14	20224002	107285436	27477	-0.0032	NEUTRAL	NA	583	Too-Many
TCGA.DY.A0XA	14	20224002	107285436	27531	-0.0149	NEUTRAL	NA	583	Too-Many
TCGA.DY.A1H8	14	20224002	107285436	27552	0.0007	NEUTRAL	NA	583	Too-Many
TCGA.EF.5830	14	20224002	107285436	27485	0.0036	NEUTRAL	NA	583	Too-Many
TCGA.EI.6506	14	20224002	107285436	27501	-0.3818	NEUTRAL	NA	583	Too-Many
TCGA.EI.6507	14	20224002	107285436	27548	0.007	NEUTRAL	NA	583	Too-Many
TCGA.EI.6510	14	20224002	107285436	27500	-0.0295	NEUTRAL	NA	583	Too-Many
TCGA.EI.6514	14	20224002	107285436	27523	-0.5054	NEUTRAL	NA	583	Too-Many
TCGA.EI.6882	14	20224002	107285436	27495	0.007	NEUTRAL	NA	583	Too-Many
TCGA.EI.6884	14	20224002	107285436	27468	-0.2848	NEUTRAL	NA	583	Too-Many
TCGA.EI.6917	14	20224002	107285436	27478	-0.0029	NEUTRAL	NA	583	Too-Many
TCGA.F4.6461	14	20224002	107285436	27485	0	NEUTRAL	NA	583	Too-Many
TCGA.F4.6463	14	20224002	107285436	27544	-0.0083	NEUTRAL	NA	583	Too-Many
TCGA.F4.6569	14	20224002	107285436	27563	1.00E-04	NEUTRAL	NA	583	Too-Many
TCGA.F4.6703	14	20224002	107285436	27505	-0.0527	NEUTRAL	NA	583	Too-Many
TCGA.F4.6805	14	20224002	107285436	27497	-0.0055	NEUTRAL	NA	583	Too-Many
TCGA.F4.6806	14	20224002	107285436	27432	-0.24	NEUTRAL	NA	583	Too-Many
TCGA.F4.6808	14	20224002	107285436	27505	-0.151	NEUTRAL	NA	583	Too-Many
TCGA.F4.6809	14	20224002	107285436	27495	-0.4472	NEUTRAL	NA	583	Too-Many
TCGA.F4.6855	14	20224002	107285436	27474	0.0033	NEUTRAL	NA	583	Too-Many
TCGA.F5.6464	14	20224002	107285436	27549	-0.0204	NEUTRAL	NA	583	Too-Many
TCGA.F5.6702	14	20224002	107285436	27429	-0.0368	NEUTRAL	NA	583	Too-Many
TCGA.F5.6810	14	20224002	107285436	27506	-0.4576	NEUTRAL	NA	583	Too-Many
TCGA.F5.6813	14	20224002	107285436	27515	0	NEUTRAL	NA	583	Too-Many
TCGA.F5.6861	14	20224002	107285436	27485	-0.0159	NEUTRAL	NA	583	Too-Many
TCGA.F5.6863	14	20224002	107285436	27497	-0.1177	NEUTRAL	NA	583	Too-Many
TCGA.G4.6293	14	20224002	107285436	27522	-0.0033	NEUTRAL	NA	583	Too-Many
TCGA.G4.6295	14	20224002	107285436	27554	-0.3873	NEUTRAL	NA	583	Too-Many
TCGA.G4.6297	14	20224002	107285436	27546	-0.1437	NEUTRAL	NA	583	Too-Many
TCGA.G4.6298	14	20224002	107285436	27549	-5.00E-04	NEUTRAL	NA	583	Too-Many
TCGA.G4.6303	14	20224002	107285436	27559	-0.019	NEUTRAL	NA	583	Too-Many
TCGA.G4.6304	14	20224002	107285436	27495	0.0001	NEUTRAL	NA	583	Too-Many
TCGA.G4.6306	14	20224002	107285436	27545	-0.0014	NEUTRAL	NA	583	Too-Many
TCGA.G4.6309	14	20224002	107285436	27493	0.0031	NEUTRAL	NA	583	Too-Many
TCGA.G4.6310	14	20224002	107285436	27539	-0.0289	NEUTRAL	NA	583	Too-Many
TCGA.G4.6311	14	20224002	107285436	27554	-0.0293	NEUTRAL	NA	583	Too-Many
TCGA.G4.6314	14	20224002	107285436	27557	-0.0055	NEUTRAL	NA	583	Too-Many
TCGA.G4.6315	14	20224002	107285436	27553	-0.2016	NEUTRAL	NA	583	Too-Many
TCGA.G4.6323	14	20224002	107285436	27552	-0.0004	NEUTRAL	NA	583	Too-Many
TCGA.G4.6588	14	20224002	107285436	27556	0.0021	NEUTRAL	NA	583	Too-Many
TCGA.G4.6625	14	20224002	107285436	27551	-0.193	NEUTRAL	NA	583	Too-Many
TCGA.G4.6628	14	20224002	107285436	27490	-0.0046	NEUTRAL	NA	583	Too-Many
TCGA.G5.6233	14	20224002	107285436	27557	-0.132	NEUTRAL	NA	583	Too-Many
TCGA.G5.6572	14	20224002	107285436	27493	-0.0183	NEUTRAL	NA	583	Too-Many
TCGA.G5.6641	14	20224002	107285436	27493	-0.1331	NEUTRAL	NA	583	Too-Many
TCGA.NH.A50U	14	20224002	107285436	27542	0.0199	NEUTRAL	NA	583	Too-Many
TCGA.NH.A5IV	14	20224002	107285436	27495	0.0091	NEUTRAL	NA	583	Too-Many
TCGA.NH.A6GA	14	20224002	107285436	27519	0.0233	NEUTRAL	NA	583	Too-Many
TCGA.QG.A5YX	14	20224002	107285436	27313	-0.0197	NEUTRAL	NA	583	Too-Many
TCGA.QG.A5Z1	14	20224002	107285436	27295	-0.0064	NEUTRAL	NA	583	Too-Many
TCGA.QG.A5Z2	14	20224002	107285436	27330	-0.0023	NEUTRAL	NA	583	Too-Many
TCGA.WS.AB45	14	20224002	107285436	27530	0.0003	NEUTRAL	NA	583	Too-Many
TCGA.AA.3860	14	20226768	20417540	12	-0.4236	NEUTRAL	NA	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AA.3681	14	20226768	20823211	146	0.0476	NEUTRAL	NA	17	"CCNB1IP1,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,PARP2,TTC5"
TCGA.A6.6653	14	20226768	20957765	226	0.0615	NEUTRAL	NA	23	"APEX1,CCNB1IP1,KLHL33,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OSGEP,PARP2,PNP,TEP1,TMEM55B,TTC5"
TCGA.AA.3864	14	20226768	22343129	740	0.1278	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3715	14	20226768	22368850	757	0.0379	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3833	14	20226768	22368850	757	0.0246	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3848	14	20226768	22375930	760	0.0607	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3812	14	20226768	22376026	763	0.0398	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3726	14	20226768	22392982	788	0.0599	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3878	14	20226768	22427925	806	0.0218	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3549	14	20226768	22561465	853	0.0469	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3882	14	20226768	22575577	868	-0.2969	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3664	14	20226768	22590876	878	0.1338	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.DY.A1DD	14	20226768	22791070	1010	0.057	NEUTRAL	NA	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.DM.A1DB	14	20226768	32470965	3843	0.0281	NEUTRAL	NA	152	Too-Many
TCGA.AA.3956	14	20226768	35990467	5222	-0.4852	NEUTRAL	NA	167	Too-Many
TCGA.AA.3818	14	20226768	57627269	11866	-0.0064	NEUTRAL	NA	254	Too-Many
TCGA.A6.2675	14	20226768	107285436	27350	-0.0182	NEUTRAL	NA	583	Too-Many
TCGA.AA.3666	14	20226768	107285436	27560	-0.4505	NEUTRAL	NA	583	Too-Many
TCGA.AF.2689	14	20226768	107285436	27529	-0.396	NEUTRAL	NA	583	Too-Many
TCGA.G4.6299	14	20226768	107285436	27551	-0.033	NEUTRAL	NA	583	Too-Many
TCGA.QG.A5YV	14	20226768	107285436	27333	0.007	NEUTRAL	NA	583	Too-Many
TCGA.AA.3517	14	20232625	107285436	27517	-0.3155	NEUTRAL	NA	583	Too-Many
TCGA.AA.A00J.01A	14	20248511	20837466	31	-0.0944	NEUTRAL	NA	18	"CCNB1IP1,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,PARP2,TEP1,TTC5"
TCGA.AA.3695	14	20264018	22393147	788	0.0462	NEUTRAL	NA	57	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3731	14	20264018	69166037	15259	0.0623	NEUTRAL	NA	325	Too-Many
TCGA.AA.3952	14	20292852	22386785	777	0.098	NEUTRAL	NA	57	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3973	14	20292852	22454286	807	0.1015	NEUTRAL	NA	57	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.A6.3807	14	20292852	22455613	809	-0.2723	NEUTRAL	NA	57	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3574	14	20348471	20858173	157	0.0485	NEUTRAL	NA	15	"CCNB1IP1,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,PARP2,TEP1,TTC5"
TCGA.AA.3977	14	20348471	22546344	839	0.1323	NEUTRAL	NA	55	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3489	14	20348471	107285436	27459	-0.0315	NEUTRAL	NA	580	Too-Many
TCGA.AA.3947	14	20362819	22276051	699	0.0444	NEUTRAL	NA	55	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3854	14	20362819	22454286	804	0.0545	NEUTRAL	NA	55	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3814	14	20362819	22478960	814	0.0222	NEUTRAL	NA	55	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3867	14	20362819	22561465	845	0.0316	NEUTRAL	NA	55	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AF.2690	14	20362819	56941363	11544	0.1913	NEUTRAL	NA	249	Too-Many
TCGA.EI.7004	14	20362819	107285436	27476	0.0028	NEUTRAL	NA	580	Too-Many
TCGA.AG.3584	14	20389720	22377372	754	0.0339	NEUTRAL	NA	55	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3594	14	20389720	22496582	826	0.0979	NEUTRAL	NA	55	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3558	14	20389720	22613689	893	0.3145	NEUTRAL	NA	55	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.DT.5265	14	20389720	107285436	27499	-0.0156	NEUTRAL	NA	580	Too-Many
TCGA.F5.6812	14	20389720	107285436	27484	-0.4361	NEUTRAL	NA	580	Too-Many
TCGA.A6.6648	14	20417540	20943503	206	0.1663	NEUTRAL	NA	18	"APEX1,CCNB1IP1,KLHL33,OR11G2,OR11H4,OR11H6,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OSGEP,PARP2,PNP,TEP1,TMEM55B,TTC5"
TCGA.CI.6622	14	20417540	21165478	331	0.0088	NEUTRAL	NA	25	"ANG,APEX1,CCNB1IP1,KLHL33,OR11G2,OR11H4,OR11H6,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR6S1,OSGEP,PARP2,PNP,RNASE10,RNASE11,RNASE12,RNASE4,RNASE9,TEP1,TMEM55B,TTC5"
TCGA.AA.3548	14	20417540	22481823	820	0.0557	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3555	14	20417540	22565072	851	0.1024	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.4021	14	20417540	22607501	881	0.0621	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3811	14	20417540	22613460	889	1.00E-04	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3583	14	20417540	22616833	874	0.0898	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AF.2692	14	20417540	22628153	900	-0.2614	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.F5.6864	14	20417540	30692050	3385	0.0122	NEUTRAL	NA	137	Too-Many
TCGA.F4.6460	14	20417540	46249190	8002	-0.2397	NEUTRAL	NA	191	Too-Many
TCGA.EI.6511	14	20417540	100723576	26424	0.0032	NEUTRAL	NA	516	Too-Many
TCGA.D5.6931	14	20417540	107285436	27476	0.0096	NEUTRAL	NA	578	Too-Many
TCGA.EI.6885	14	20417540	107285436	27481	0.2278	NEUTRAL	NA	578	Too-Many
TCGA.AA.3860	14	20419258	22478960	810	0.0974	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3516	14	20419258	22479811	812	0.0307	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AY.6196	14	20419258	91257873	22343	0	NEUTRAL	NA	446	Too-Many
TCGA.NH.A50T	14	20419258	107285436	27347	-0.2911	NEUTRAL	NA	578	Too-Many
TCGA.AF.6655	14	20420150	22637042	909	0.0218	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.A6.6780	14	20422582	24601317	1554	0.0541	NEUTRAL	NA	100	"ABHD4,ACIN1,AJUBA,ANG,AP1G2,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,CPNE6,DAD1,DCAF11,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EDDM3A,EDDM3B,EFS,FITM1,HAUS4,HNRNPC,HOMEZ,IL25,JPH4,KLHL33,LRP10,LRRC16B,METTL17,METTL3,MMP14,MRPL52,MYH6,MYH7,NDRG2,NGDN,NRL,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PCK2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,THTPA,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZFHX2,ZNF219"
TCGA.AA.3518	14	20422582	107285436	27480	-0.0037	NEUTRAL	NA	578	Too-Many
TCGA.AM.5821	14	20422582	107285436	27437	0.0079	NEUTRAL	NA	578	Too-Many
TCGA.AA.3561	14	20424925	20487106	14	-0.4895	NEUTRAL	NA	2	"OR4K14,OR4K15"
TCGA.A6.2674	14	20424925	20796877	121	0.286	NEUTRAL	NA	11	"CCNB1IP1,OR11G2,OR11H4,OR11H6,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,TTC5"
TCGA.A6.5657	14	20424925	21357146	420	-0.0026	NEUTRAL	NA	29	"ANG,APEX1,CCNB1IP1,EDDM3A,EDDM3B,KLHL33,OR11G2,OR11H4,OR11H6,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR6S1,OSGEP,PARP2,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE4,RNASE6,RNASE9,TEP1,TMEM55B,TTC5"
TCGA.DM.A1D6	14	20424925	73643058	16807	0.0625	NEUTRAL	NA	351	Too-Many
TCGA.AG.3883	14	20425910	22378541	750	-0.224	NEUTRAL	NA	53	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.CM.6170	14	20425910	23079729	1135	-0.4684	NEUTRAL	NA	55	"ABHD4,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K15,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.D5.6539	14	20425910	97990799	25143	-0.0085	NEUTRAL	NA	505	Too-Many
TCGA.AG.3898	14	20425910	107285436	27451	-0.1474	NEUTRAL	NA	578	Too-Many
TCGA.AG.A026	14	20425910	107285436	27502	-0.5103	NEUTRAL	NA	578	Too-Many
TCGA.AZ.6599	14	20456321	107285436	27542	0.005	NEUTRAL	NA	577	Too-Many
TCGA.DM.A1HB	14	20482918	22607501	852	0.0397	NEUTRAL	NA	52	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K14,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3891.01A	14	20528205	23043956	289	-0.2583	NEUTRAL	NA	51	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AZ.4684.01A	14	20585535	25102073	870	-0.0117	NEUTRAL	NA	129	Too-Many
TCGA.AG.A01W.01A	14	20595873	20614311	5	0.2816	NEUTRAL	NA	1	OR4N5
TCGA.AG.A01W.01A	14	20616123	20625941	12	-0.377	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	20626774	20771905	15	0.2149	NEUTRAL	NA	4	"OR11G2,OR11H4,OR11H6,TTC5"
TCGA.AA.A00N.01A	14	20665486	20839325	35	-0.4196	NEUTRAL	NA	7	"CCNB1IP1,OR11G2,OR11H4,OR11H6,PARP2,TEP1,TTC5"
TCGA.AA.3982	14	20747194	22130427	539	0.2313	NEUTRAL	NA	43	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.A015.01A	14	20757749	20779677	11	0.14	NEUTRAL	NA	2	"CCNB1IP1,TTC5"
TCGA.AA.A02H.01A	14	20763434	20811727	13	-0.4886	NEUTRAL	NA	2	"CCNB1IP1,TTC5"
TCGA.AG.3909.01A	14	20764481	20822236	18	-0.4764	NEUTRAL	NA	3	"CCNB1IP1,PARP2,TTC5"
TCGA.AA.3930.01A	14	20769945	23755055	439	0.2183	NEUTRAL	NA	66	"ABHD4,ACIN1,AJUBA,ANG,APEX1,ARHGEF40,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,DAD1,EDDM3A,EDDM3B,HAUS4,HNRNPC,HOMEZ,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OR6S1,OSGEP,OXA1L,PARP2,PNP,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.A025.01A	14	20769945	24808934	754	-0.3683	NEUTRAL	NA	115	Too-Many
TCGA.AG.A00Y.01A	14	20769945	24880245	763	0.2418	NEUTRAL	NA	117	Too-Many
TCGA.AG.A01J.01A	14	20773970	24788901	717	-0.3453	NEUTRAL	NA	114	Too-Many
TCGA.AA.A010.01A	14	20781580	20794549	3	-0.2558	NEUTRAL	NA	1	CCNB1IP1
TCGA.AG.A015.01A	14	20781580	21462077	99	-0.3287	NEUTRAL	NA	22	"ANG,APEX1,CCNB1IP1,EDDM3A,EDDM3B,KLHL33,METTL17,OR6S1,OSGEP,PARP2,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE2,RNASE3,RNASE4,RNASE6,RNASE9,TEP1,TMEM55B"
TCGA.AA.A00L.01A	14	20784388	25042824	677	-0.3692	NEUTRAL	NA	121	Too-Many
TCGA.AA.3844	14	20802314	22343129	609	0.1159	NEUTRAL	NA	42	"ANG,APEX1,ARHGEF40,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,ZNF219"
TCGA.A6.2674	14	20809490	22580761	733	0.1819	NEUTRAL	NA	42	"ANG,APEX1,ARHGEF40,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,ZNF219"
TCGA.AG.A01L.01A	14	20811727	20822941	9	-0.3965	NEUTRAL	NA	1	PARP2
TCGA.AG.4009.01A	14	20811727	20876003	57	-0.0484	NEUTRAL	NA	2	"PARP2,TEP1"
TCGA.AA.3967.01A	14	20813040	21555123	142	0.0928	NEUTRAL	NA	28	"ANG,APEX1,ARHGEF40,EDDM3A,EDDM3B,KLHL33,METTL17,NDRG2,OR6S1,OSGEP,PARP2,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,SLC39A2,TEP1,TMEM55B,TPPP2"
TCGA.AG.A01N.01A	14	20818662	21702064	153	-0.3482	NEUTRAL	NA	32	"ANG,APEX1,ARHGEF40,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,NDRG2,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,SLC39A2,TEP1,TMEM253,TMEM55B,TPPP2,ZNF219"
TCGA.AG.3909.01A	14	20822941	20840844	11	0.0888	NEUTRAL	NA	2	"PARP2,TEP1"
TCGA.AA.A00D.01A	14	20822941	20863559	34	0.1143	NEUTRAL	NA	2	"PARP2,TEP1"
TCGA.AG.A01L.01A	14	20823851	21853783	191	0.0964	NEUTRAL	NA	35	"ANG,APEX1,ARHGEF40,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,NDRG2,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TPPP2,ZNF219"
TCGA.AA.3681	14	20824858	22478960	673	0.1122	NEUTRAL	NA	42	"ANG,APEX1,ARHGEF40,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,ZNF219"
TCGA.AG.A01W.01A	14	20825922	20911295	42	-0.4074	NEUTRAL	NA	3	"KLHL33,PARP2,TEP1"
TCGA.AA.3530	14	20827796	22613460	748	-0.3128	NEUTRAL	NA	41	"ANG,APEX1,ARHGEF40,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OR6S1,OSGEP,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,ZNF219"
TCGA.CK.5914.01A	14	20836567	20896960	44	0.0442	NEUTRAL	NA	1	TEP1
TCGA.AA.A00J.01A	14	20839325	20851619	19	0.2396	NEUTRAL	NA	1	TEP1
TCGA.AA.A01K.01A	14	20848346	20872791	26	-0.4978	NEUTRAL	NA	1	TEP1
TCGA.AA.A01Q.01A	14	20854195	20923737	28	0.0227	NEUTRAL	NA	4	"APEX1,KLHL33,OSGEP,TEP1"
TCGA.AA.A00N.01A	14	20856027	20872791	14	0.2387	NEUTRAL	NA	1	TEP1
TCGA.AG.3909.01A	14	20856027	20897669	19	0.1836	NEUTRAL	NA	2	"KLHL33,TEP1"
TCGA.AA.A00J.01A	14	20856027	89338622	3227	0.0557	NEUTRAL	NA	426	Too-Many
TCGA.AG.A00C.01A	14	20874345	20940439	17	-0.0419	NEUTRAL	NA	6	"APEX1,KLHL33,OSGEP,PNP,TEP1,TMEM55B"
TCGA.AA.A010.01A	14	20915317	21161773	27	-0.0523	NEUTRAL	NA	11	"ANG,APEX1,OR6S1,OSGEP,PNP,RNASE10,RNASE11,RNASE12,RNASE4,RNASE9,TMEM55B"
TCGA.AA.A01Q.01A	14	20928817	21561650	83	-0.0469	NEUTRAL	NA	24	"ANG,ARHGEF40,EDDM3A,EDDM3B,METTL17,NDRG2,OR6S1,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,SLC39A2,TMEM55B,TPPP2,ZNF219"
TCGA.CK.5914.01A	14	20937593	21571246	86	-0.3587	NEUTRAL	NA	24	"ANG,ARHGEF40,EDDM3A,EDDM3B,METTL17,NDRG2,OR6S1,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,SLC39A2,TMEM253,TPPP2,ZNF219"
TCGA.AG.A01W.01A	14	20941009	20999144	16	-0.0087	NEUTRAL	NA	2	"PNP,RNASE10"
TCGA.AG.3909.01A	14	20942601	21486542	38	-0.0233	NEUTRAL	NA	17	"ANG,EDDM3A,EDDM3B,METTL17,NDRG2,OR6S1,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE2,RNASE3,RNASE4,RNASE6,RNASE9,SLC39A2"
TCGA.AA.A01K.01A	14	20944496	21458392	18	-0.293	NEUTRAL	NA	15	"ANG,EDDM3A,EDDM3B,METTL17,OR6S1,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE2,RNASE3,RNASE4,RNASE6,RNASE9"
TCGA.A6.6648	14	20947267	20992496	29	-0.3212	NEUTRAL	NA	1	RNASE10
TCGA.AA.3979	14	20988086	22581277	628	0.2515	NEUTRAL	NA	34	"ANG,ARHGEF40,CHD8,EDDM3A,EDDM3B,HNRNPC,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OR6S1,RAB2B,RNASE1,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TMEM253,TOX4,TPPP2,ZNF219"
TCGA.A6.6648	14	20992858	23079729	907	0.1763	NEUTRAL	NA	36	"ABHD4,ANG,ARHGEF40,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OR6S1,RAB2B,RNASE1,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TMEM253,TOX4,TPPP2,ZNF219"
TCGA.AG.A01W.01A	14	21000285	21012819	5	-0.3932	NEUTRAL	NA	0	None
TCGA.A6.6653	14	21004036	21146583	81	-0.0279	NEUTRAL	NA	4	"OR6S1,RNASE11,RNASE12,RNASE9"
TCGA.AG.A01W.01A	14	21014477	21026599	6	0.0212	NEUTRAL	NA	1	RNASE9
TCGA.AG.4009.01A	14	21024611	21486542	34	-0.317	NEUTRAL	NA	15	"ANG,EDDM3A,EDDM3B,METTL17,NDRG2,OR6S1,RNASE1,RNASE11,RNASE12,RNASE2,RNASE3,RNASE4,RNASE6,RNASE9,SLC39A2"
TCGA.AG.A01W.01A	14	21027155	21160248	19	-0.4957	NEUTRAL	NA	6	"ANG,OR6S1,RNASE11,RNASE12,RNASE4,RNASE9"
TCGA.AA.3524	14	21153298	23854271	1013	-0.1383	NEUTRAL	NA	61	"ABHD4,ACIN1,AJUBA,ANG,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CHD8,CMTM5,DAD1,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TMEM253,TOX4,TPPP2,ZNF219"
TCGA.AG.A01W.01A	14	21171855	22008331	90	0.0992	NEUTRAL	NA	25	"ARHGEF40,CHD8,EDDM3A,EDDM3B,HNRNPC,METTL17,METTL3,NDRG2,OR5AU1,RAB2B,RNASE1,RNASE13,RNASE2,RNASE3,RNASE6,RNASE7,RNASE8,RPGRIP1,SALL2,SLC39A2,SUPT16H,TMEM253,TOX4,TPPP2,ZNF219"
TCGA.CI.6622	14	21178397	95477758	23761	0.0004	NEUTRAL	NA	466	Too-Many
TCGA.A6.6653	14	21203004	23081925	801	0.0869	NEUTRAL	NA	30	"ABHD4,ARHGEF40,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,RAB2B,RNASE1,RNASE13,RNASE2,RNASE3,RNASE6,RNASE7,RNASE8,RPGRIP1,SALL2,SLC39A2,SUPT16H,TMEM253,TOX4,TPPP2,ZNF219"
TCGA.AA.A00N.01A	14	21238303	21486103	24	0.1417	NEUTRAL	NA	8	"EDDM3B,METTL17,NDRG2,RNASE1,RNASE2,RNASE3,RNASE6,SLC39A2"
TCGA.A6.5657	14	21424717	21689712	97	0.0318	NEUTRAL	NA	12	"ARHGEF40,HNRNPC,METTL17,NDRG2,OR5AU1,RNASE13,RNASE7,RNASE8,SLC39A2,TMEM253,TPPP2,ZNF219"
TCGA.AA.A010.01A	14	21463994	21502000	24	0.1472	NEUTRAL	NA	5	"METTL17,NDRG2,RNASE13,SLC39A2,TPPP2"
TCGA.AF.3914.01A	14	21469068	21490189	11	-0.2651	NEUTRAL	NA	2	"NDRG2,SLC39A2"
TCGA.AG.3901	14	21479454	22420836	337	0.0863	NEUTRAL	NA	20	"ARHGEF40,CHD8,HNRNPC,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,RAB2B,RNASE13,RNASE7,RNASE8,RPGRIP1,SALL2,SUPT16H,TMEM253,TOX4,TPPP2,ZNF219"
TCGA.AG.A00C.01A	14	21486542	21561650	41	-0.1659	NEUTRAL	NA	7	"ARHGEF40,NDRG2,RNASE13,RNASE7,RNASE8,TPPP2,ZNF219"
TCGA.AG.A015.01A	14	21486901	107282751	4850	-0.1559	NEUTRAL	NA	545	Too-Many
TCGA.AF.3914.01A	14	21490504	21526032	10	0.1649	NEUTRAL	NA	5	"NDRG2,RNASE13,RNASE7,RNASE8,TPPP2"
TCGA.AG.3909.01A	14	21500029	21544471	11	-0.4635	NEUTRAL	NA	6	"ARHGEF40,NDRG2,RNASE13,RNASE7,RNASE8,TPPP2"
TCGA.AG.3909.01A	14	21546282	21789971	37	-0.0465	NEUTRAL	NA	6	"ARHGEF40,HNRNPC,OR5AU1,RPGRIP1,TMEM253,ZNF219"
TCGA.AF.3914.01A	14	21547003	21798361	43	0.2147	NEUTRAL	NA	6	"ARHGEF40,HNRNPC,OR5AU1,RPGRIP1,TMEM253,ZNF219"
TCGA.AG.A02G.01A	14	21558748	21863917	64	-0.4532	NEUTRAL	NA	7	"CHD8,HNRNPC,OR5AU1,RPGRIP1,SUPT16H,TMEM253,ZNF219"
TCGA.AA.3967.01A	14	21560024	24900629	630	0.0196	NEUTRAL	NA	89	"ABHD4,ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHD8,CHMP4A,CIDEB,CMTM5,CPNE6,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,HAUS4,HNRNPC,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,METTL3,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,OR10G2,OR10G3,OR4E2,OR5AU1,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RAB2B,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,RPGRIP1,SALL2,SLC22A17,SLC7A7,SLC7A8,SUPT16H,TGM1,THTPA,TINF2,TM9SF1,TMEM253,TOX4,TSSK4,ZFHX2,ZNF219"
TCGA.AA.A01Q.01A	14	21569975	23299044	89	0.3066	NEUTRAL	NA	18	"ABHD4,CHD8,DAD1,HNRNPC,METTL3,OR10G2,OR10G3,OR4E2,OR5AU1,OXA1L,RAB2B,RPGRIP1,SALL2,SLC7A7,SUPT16H,TMEM253,TOX4,ZNF219"
TCGA.AA.A010.01A	14	21623084	21681067	4	-0.2878	NEUTRAL	NA	2	"HNRNPC,OR5AU1"
TCGA.AG.4009.01A	14	21623084	23043956	117	-0.1867	NEUTRAL	NA	13	"CHD8,DAD1,HNRNPC,METTL3,OR10G2,OR10G3,OR4E2,OR5AU1,RAB2B,RPGRIP1,SALL2,SUPT16H,TOX4"
TCGA.AG.3906.01A	14	21623084	23503876	206	0.1472	NEUTRAL	NA	26	"ABHD4,AJUBA,C14orf93,CHD8,DAD1,HAUS4,HNRNPC,LRP10,METTL3,MMP14,MRPL52,OR10G2,OR10G3,OR4E2,OR5AU1,OXA1L,PRMT5,PSMB5,RAB2B,RBM23,REM2,RPGRIP1,SALL2,SLC7A7,SUPT16H,TOX4"
TCGA.A6.5657	14	21697940	23092104	609	-0.0097	NEUTRAL	NA	13	"ABHD4,CHD8,DAD1,HNRNPC,METTL3,OR10G2,OR10G3,OR4E2,RAB2B,RPGRIP1,SALL2,SUPT16H,TOX4"
TCGA.AG.A00C.01A	14	21756088	21789376	12	-0.0697	NEUTRAL	NA	1	RPGRIP1
TCGA.AA.A00N.01A	14	21779952	21841442	36	0.3703	NEUTRAL	NA	2	"RPGRIP1,SUPT16H"
TCGA.AG.A01N.01A	14	21785827	21826432	21	-0.3142	NEUTRAL	NA	2	"RPGRIP1,SUPT16H"
TCGA.CK.5914.01A	14	21793351	21899876	62	0.1095	NEUTRAL	NA	3	"CHD8,RPGRIP1,SUPT16H"
TCGA.AF.3914.01A	14	21802712	23445598	170	-0.1276	NEUTRAL	NA	22	"ABHD4,AJUBA,CHD8,DAD1,HAUS4,LRP10,METTL3,MMP14,MRPL52,OR10G2,OR10G3,OR4E2,OXA1L,PRMT5,RAB2B,RBM23,REM2,RPGRIP1,SALL2,SLC7A7,SUPT16H,TOX4"
TCGA.AA.A01K.01A	14	21811156	23075291	95	-0.2098	NEUTRAL	NA	12	"ABHD4,CHD8,DAD1,METTL3,OR10G2,OR10G3,OR4E2,RAB2B,RPGRIP1,SALL2,SUPT16H,TOX4"
TCGA.AG.3574	14	21811629	22536070	277	0.1736	NEUTRAL	NA	10	"CHD8,METTL3,OR10G2,OR10G3,OR4E2,RAB2B,RPGRIP1,SALL2,SUPT16H,TOX4"
TCGA.AA.A00A.01A	14	21820815	31542049	606	0.2403	NEUTRAL	NA	98	"ABHD4,ACIN1,ADCY4,AJUBA,AP1G2,AP4S1,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHD8,CHMP4A,CIDEB,CMA1,CMTM5,COCH,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,FOXG1,G2E3,GMPR2,GZMB,GZMH,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,METTL3,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NOVA1,NRL,NYNRIN,OR10G2,OR10G3,OR4E2,OXA1L,PABPN1,PCK2,PPP1R3E,PRKD1,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RAB2B,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SALL2,SCFD1,SDR39U1,SLC22A17,SLC7A7,SLC7A8,STRN3,STXBP6,SUPT16H,TGM1,THTPA,TINF2,TM9SF1,TOX4,TSSK4,ZFHX2"
TCGA.AG.A01N.01A	14	21837333	23244615	91	-0.0631	NEUTRAL	NA	13	"ABHD4,CHD8,DAD1,METTL3,OR10G2,OR10G3,OR4E2,OXA1L,RAB2B,SALL2,SLC7A7,SUPT16H,TOX4"
TCGA.AA.A02H.01A	14	21851955	21861224	7	-0.0617	NEUTRAL	NA	2	"CHD8,SUPT16H"
TCGA.AA.A02H.01A	14	21861594	21897086	25	-0.4355	NEUTRAL	NA	1	CHD8
TCGA.AG.A02G.01A	14	21868094	23791358	191	-0.514	NEUTRAL	NA	34	"ABHD4,ACIN1,AJUBA,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CHD8,DAD1,HAUS4,HOMEZ,LRP10,METTL3,MMP14,MRPL52,OR10G2,OR10G3,OR4E2,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNF212B,SALL2,SLC7A7,SLC7A8,TOX4"
TCGA.AG.A01L.01A	14	21873331	24572670	366	0.0809	NEUTRAL	NA	53	"ABHD4,ACIN1,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CHD8,CMTM5,CPNE6,DAD1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,HAUS4,HOMEZ,IL25,JPH4,LRP10,LRRC16B,METTL3,MMP14,MRPL52,MYH6,MYH7,NGDN,NRL,OR10G2,OR10G3,OR4E2,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNF212B,SALL2,SLC22A17,SLC7A7,SLC7A8,THTPA,TOX4,ZFHX2"
TCGA.AA.A01F.01A	14	21957302	24838665	445	-0.2829	NEUTRAL	NA	78	"ABHD4,ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CHMP4A,CIDEB,CMTM5,CPNE6,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,METTL3,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,OR10G2,OR10G3,OR4E2,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SALL2,SLC22A17,SLC7A7,SLC7A8,TGM1,THTPA,TINF2,TM9SF1,TOX4,TSSK4,ZFHX2"
TCGA.AG.3909.01A	14	21960429	22997416	20	0.1825	NEUTRAL	NA	6	"METTL3,OR10G2,OR10G3,OR4E2,SALL2,TOX4"
TCGA.CK.5914.01A	14	21960855	23282077	46	-0.016	NEUTRAL	NA	10	"ABHD4,DAD1,METTL3,OR10G2,OR10G3,OR4E2,OXA1L,SALL2,SLC7A7,TOX4"
TCGA.AA.A02H.01A	14	21979218	23299044	35	-0.4049	NEUTRAL	NA	9	"ABHD4,DAD1,METTL3,OR10G2,OR10G3,OR4E2,OXA1L,SALL2,SLC7A7"
TCGA.AG.A01W.01A	14	22014077	22028245	10	-0.4578	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	22029261	22081896	46	-0.1396	NEUTRAL	NA	1	OR10G3
TCGA.AG.A01W.01A	14	22082799	22145132	13	0.1899	NEUTRAL	NA	2	"OR10G2,OR4E2"
TCGA.AA.3982	14	22135351	22342441	88	-0.0576	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	22148442	22381419	25	-0.2563	NEUTRAL	NA	0	None
TCGA.AA.3560	14	22267490	22607501	189	0.1281	NEUTRAL	NA	0	None
TCGA.AG.3575	14	22267490	22617414	203	0.2687	NEUTRAL	NA	0	None
TCGA.AA.3976	14	22267490	22631884	209	-0.1096	NEUTRAL	NA	0	None
TCGA.AA.3975	14	22267490	22988570	393	-0.2834	NEUTRAL	NA	0	None
TCGA.AG.3885	14	22268267	22617414	202	0.2929	NEUTRAL	NA	0	None
TCGA.AG.3598	14	22278737	22978774	380	-0.3962	NEUTRAL	NA	0	None
TCGA.AA.3941	14	22340126	22422975	65	-0.369	NEUTRAL	NA	0	None
TCGA.AA.3864	14	22343145	22373340	15	-0.4148	NEUTRAL	NA	0	None
TCGA.AA.3556	14	22368850	22983222	335	0.3086	NEUTRAL	NA	0	None
TCGA.AA.3688	14	22368850	22997832	343	-0.2093	NEUTRAL	NA	0	None
TCGA.AA.3833	14	22368901	22592993	124	0.3216	NEUTRAL	NA	0	None
TCGA.AA.3685	14	22368901	22613689	147	0.1595	NEUTRAL	NA	0	None
TCGA.AA.3715	14	22368901	22617432	151	0.3258	NEUTRAL	NA	0	None
TCGA.AA.3841	14	22368901	22658312	179	0.0236	NEUTRAL	NA	0	None
TCGA.AA.3982	14	22373340	22546344	92	-0.1823	NEUTRAL	NA	0	None
TCGA.AA.3844	14	22373340	22561465	95	-0.0888	NEUTRAL	NA	0	None
TCGA.AA.3864	14	22374398	22613689	143	0.1698	NEUTRAL	NA	0	None
TCGA.AA.3812	14	22377372	22427925	43	0.3653	NEUTRAL	NA	0	None
TCGA.AG.3581	14	22377372	22978774	331	-0.0617	NEUTRAL	NA	0	None
TCGA.AA.3696	14	22377904	22576413	106	0.3432	NEUTRAL	NA	0	None
TCGA.AA.3678	14	22378541	22617432	143	-0.1226	NEUTRAL	NA	0	None
TCGA.AG.3883	14	22378707	22613689	138	0.1055	NEUTRAL	NA	0	None
TCGA.AA.3692	14	22378796	22575577	101	0.3397	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	22382280	22415700	11	0.277	NEUTRAL	NA	0	None
TCGA.AA.3850	14	22408803	22698623	160	0.03445	NEUTRAL	NA	0	None
TCGA.AG.3727	14	22413784	22983222	298	-0.1813	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	22422286	22445208	9	-0.2964	NEUTRAL	NA	0	None
TCGA.AA.3812	14	22428363	22459449	10	-0.1194	NEUTRAL	NA	0	None
TCGA.AA.3693	14	22455613	22576147	56	-0.399	NEUTRAL	NA	0	None
TCGA.AA.3819	14	22455613	22628153	99	-0.2351	NEUTRAL	NA	0	None
TCGA.AA.3973	14	22455613	22652361	116	0.353	NEUTRAL	NA	0	None
TCGA.AA.3667	14	22455613	22658312	123	-0.2876	NEUTRAL	NA	0	None
TCGA.AG.3591	14	22458694	22975727	270	0.0562	NEUTRAL	NA	0	None
TCGA.A6.3807	14	22458694	22978774	277	0.087	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	22459916	22526915	29	-0.082	NEUTRAL	NA	0	None
TCGA.EI.6509	14	22481789	22959825	245	0.2393	NEUTRAL	NA	0	None
TCGA.RU.A8FL	14	22536070	22959825	227	0.213	NEUTRAL	NA	0	None
TCGA.AA.3982	14	22549609	24099374	570	0.3343	NEUTRAL	NA	37	"ABHD4,ACIN1,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CMTM5,DAD1,EFS,HAUS4,HOMEZ,IL25,JPH4,LRP10,MMP14,MRPL52,MYH6,MYH7,NGDN,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A7,SLC7A8,THTPA,ZFHX2"
TCGA.AA.3846	14	22553955	22978774	239	0.1326	NEUTRAL	NA	0	None
TCGA.AA.3972	14	22562098	22978774	239	-0.2469	NEUTRAL	NA	0	None
TCGA.AG.3882	14	22576147	22607364	24	0.2449	NEUTRAL	NA	0	None
TCGA.AA.3693	14	22576413	22607501	24	-0.0336	NEUTRAL	NA	0	None
TCGA.AG.3725	14	22580569	22922237	184	0.2426	NEUTRAL	NA	0	None
TCGA.A6.2674	14	22581070	22971590	210	-0.3281	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	22588048	22861184	49	-0.0898	NEUTRAL	NA	0	None
TCGA.AA.3941	14	22601930	22607364	7	-0.3708	NEUTRAL	NA	0	None
TCGA.AA.3844	14	22605155	22613689	18	-0.1884	NEUTRAL	NA	0	None
TCGA.AA.3860	14	22605745	22615464	18	0.3488	NEUTRAL	NA	0	None
TCGA.AA.3833	14	22606971	22623631	20	0.1887	NEUTRAL	NA	0	None
TCGA.AG.3882	14	22607501	22623631	18	-0.1878	NEUTRAL	NA	0	None
TCGA.AG.4021	14	22611311	22612287	9	-0.4267	NEUTRAL	NA	0	None
TCGA.AA.3549	14	22611311	22613689	11	-0.0179	NEUTRAL	NA	0	None
TCGA.AA.3812	14	22611311	22613689	11	0.0915	NEUTRAL	NA	0	None
TCGA.AA.3848	14	22611311	22613689	11	0.0833	NEUTRAL	NA	0	None
TCGA.AA.3544	14	22611311	22617414	14	0.0146	NEUTRAL	NA	0	None
TCGA.AA.3854	14	22611311	22617432	15	0.1933	NEUTRAL	NA	0	None
TCGA.AA.3681	14	22611311	22626947	18	0.0255	NEUTRAL	NA	0	None
TCGA.AA.3837	14	22611420	22612287	8	-0.4678	NEUTRAL	NA	0	None
TCGA.AA.3675	14	22611420	22613689	10	0.2153	NEUTRAL	NA	0	None
TCGA.AG.3574	14	22611466	22613689	9	-0.0177	NEUTRAL	NA	0	None
TCGA.AG.4021	14	22613460	107285436	26609	0.0108	NEUTRAL	NA	525	Too-Many
TCGA.AA.3530	14	22613689	22988570	194	0.1503	NEUTRAL	NA	0	None
TCGA.AA.3811	14	22613689	24117610	534	0.3023	NEUTRAL	NA	38	"ABHD4,ACIN1,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CMTM5,DAD1,DHRS2,EFS,HAUS4,HOMEZ,IL25,JPH4,LRP10,MMP14,MRPL52,MYH6,MYH7,NGDN,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A7,SLC7A8,THTPA,ZFHX2"
TCGA.AA.3560	14	22615464	22946379	165	0.3245	NEUTRAL	NA	0	None
TCGA.AA.3844	14	22615464	23939431	472	0.3146	NEUTRAL	NA	33	"ABHD4,ACIN1,AJUBA,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CMTM5,DAD1,EFS,HAUS4,HOMEZ,IL25,LRP10,MMP14,MRPL52,MYH6,MYH7,NGDN,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A7,SLC7A8"
TCGA.DM.A1HB	14	22615464	88415499	20351	-0.0062	NEUTRAL	NA	378	Too-Many
TCGA.AA.3968	14	22617432	22978774	187	0.1969	NEUTRAL	NA	0	None
TCGA.AA.3678	14	22619917	22946219	160	0.1724	NEUTRAL	NA	0	None
TCGA.AG.3882	14	22626947	22975727	177	0.2052	NEUTRAL	NA	0	None
TCGA.AA.3693	14	22628153	22946379	158	-0.033	NEUTRAL	NA	0	None
TCGA.AF.2692	14	22630151	22966417	164	0.2953	NEUTRAL	NA	0	None
TCGA.AA.3819	14	22630151	22969650	166	0.0895	NEUTRAL	NA	0	None
TCGA.AA.3976	14	22633667	22950490	156	0.1475	NEUTRAL	NA	0	None
TCGA.AF.6655	14	22647534	107285436	26573	-0.0174	NEUTRAL	NA	525	Too-Many
TCGA.AA.3667	14	22662855	22946219	132	0.0883	NEUTRAL	NA	0	None
TCGA.AA.3841	14	22662855	22978774	158	0.3081	NEUTRAL	NA	0	None
TCGA.A6.6137	14	22732477	41606881	5929	0.0141	NEUTRAL	NA	129	Too-Many
TCGA.DY.A1DD	14	22797560	107285436	26532	-0.0128	NEUTRAL	NA	525	Too-Many
TCGA.AA.3941	14	22838629	22843577	3	-0.4982	NEUTRAL	NA	0	None
TCGA.AA.3685	14	22843436	22851241	7	-0.0663	NEUTRAL	NA	0	None
TCGA.AA.3715	14	22843436	22851241	7	0.0307	NEUTRAL	NA	0	None
TCGA.AA.3858	14	22843436	22851241	7	0.093	NEUTRAL	NA	0	None
TCGA.AG.3885	14	22843436	22851241	7	0.1317	NEUTRAL	NA	0	None
TCGA.AA.3856	14	22851064	22851241	3	-0.2434	NEUTRAL	NA	0	None
TCGA.AA.3685	14	22855144	22978774	68	0.35	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	22898318	22939742	32	-0.1828	NEUTRAL	NA	0	None
TCGA.AZ.4614	14	22900919	23020705	67	0.1904	NEUTRAL	NA	0	None
TCGA.AA.3529	14	22922368	43948698	6455	-0.0068	NEUTRAL	NA	130	Too-Many
TCGA.AG.3725	14	22922368	107285436	26474	-0.0068	NEUTRAL	NA	525	Too-Many
TCGA.AA.3856	14	22946379	22970326	14	0.2914	NEUTRAL	NA	0	None
TCGA.AA.3667	14	22946379	22978774	26	-0.2283	NEUTRAL	NA	0	None
TCGA.AA.3678	14	22946379	22978774	26	-0.1598	NEUTRAL	NA	0	None
TCGA.AA.3673	14	22946379	22983222	27	0.2666	NEUTRAL	NA	0	None
TCGA.AA.3864	14	22946379	57066166	10534	-0.0549	NEUTRAL	NA	195	Too-Many
TCGA.AG.3883	14	22947281	22978515	22	0.1294	NEUTRAL	NA	0	None
TCGA.AA.3854	14	22947281	22978576	23	0.3598	NEUTRAL	NA	0	None
TCGA.AA.3693	14	22947281	22978759	24	-0.2969	NEUTRAL	NA	0	None
TCGA.AA.3812	14	22947281	22978774	25	0.3258	NEUTRAL	NA	0	None
TCGA.AA.3681	14	22947281	23824535	266	0.2671	NEUTRAL	NA	27	"ABHD4,ACIN1,AJUBA,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,DAD1,HAUS4,HOMEZ,LRP10,MMP14,MRPL52,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A7,SLC7A8"
TCGA.AA.3560	14	22947281	37234137	4577	-0.2252	NEUTRAL	NA	118	Too-Many
TCGA.AA.3833	14	22947281	52208016	8732	0.0196	NEUTRAL	NA	164	Too-Many
TCGA.AA.3952	14	22947902	23047865	72	0.1682	NEUTRAL	NA	1	DAD1
TCGA.AA.3845	14	22947902	107285436	26429	-0.0014	NEUTRAL	NA	525	Too-Many
TCGA.AA.3949	14	22950490	25248292	737	0.1184	NEUTRAL	NA	80	"ABHD4,ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,GZMB,GZMH,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A7,SLC7A8,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.3973	14	22953606	22978774	22	0.3355	NEUTRAL	NA	0	None
TCGA.AA.3976	14	22953606	22988021	24	-0.1651	NEUTRAL	NA	0	None
TCGA.AA.3680	14	22953606	107285436	26490	0.0049	NEUTRAL	NA	525	Too-Many
TCGA.AA.3869	14	22953606	107285436	26452	0.0169	NEUTRAL	NA	525	Too-Many
TCGA.AG.A01W.01A	14	22955926	22959974	8	-0.3259	NEUTRAL	NA	0	None
TCGA.AG.3583	14	22966417	22978774	19	0.2872	NEUTRAL	NA	0	None
TCGA.AG.3594	14	22966417	34953426	3954	0.0101	NEUTRAL	NA	99	"ABHD4,ACIN1,ADCY4,AJUBA,AKAP6,AP1G2,AP4S1,ARHGAP5,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,COCH,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,DTD2,EFS,EGLN3,EMC9,FITM1,FOXG1,G2E3,GMPR2,GPR33,GZMB,GZMH,HAUS4,HEATR5A,HECTD1,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NOVA1,NPAS3,NRL,NUBPL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRKD1,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SCFD1,SDR39U1,SLC22A17,SLC7A7,SLC7A8,SPTSSA,STRN3,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.3516	14	22966417	81225435	18244	-0.0077	NEUTRAL	NA	372	Too-Many
TCGA.RU.A8FL	14	22966417	83160908	18828	-0.0642	NEUTRAL	NA	376	Too-Many
TCGA.EI.6509	14	22966417	107285436	26477	-0.0766	NEUTRAL	NA	525	Too-Many
TCGA.AF.2692	14	22966661	22983222	19	-0.0133	NEUTRAL	NA	0	None
TCGA.AA.3852	14	22966661	107285436	26486	0.3498	NEUTRAL	NA	525	Too-Many
TCGA.A6.2683	14	22968853	107285436	26445	-0.3145	NEUTRAL	NA	525	Too-Many
TCGA.AA.3548	14	22969650	107285436	26479	-0.0122	NEUTRAL	NA	525	Too-Many
TCGA.AA.3971	14	22970255	107285436	26451	-0.4946	NEUTRAL	NA	525	Too-Many
TCGA.AA.A02Y	14	22970255	107285436	26446	-0.0022	NEUTRAL	NA	525	Too-Many
TCGA.AG.3901	14	22970255	107285436	26410	0.0293	NEUTRAL	NA	525	Too-Many
TCGA.AA.3696	14	22971264	22978774	12	0.3411	NEUTRAL	NA	0	None
TCGA.AA.3715	14	22971264	22988570	15	0.3125	NEUTRAL	NA	0	None
TCGA.AA.3856	14	22971264	107285436	26484	0.0035	NEUTRAL	NA	525	Too-Many
TCGA.AA.3858	14	22971264	107285436	26479	-0.0303	NEUTRAL	NA	525	Too-Many
TCGA.A6.2674	14	22974255	107285436	26458	0.156	NEUTRAL	NA	525	Too-Many
TCGA.AA.3866	14	22975699	46837111	7056	0	NEUTRAL	NA	138	Too-Many
TCGA.AA.3544	14	22975727	107285436	26480	-0.0004	NEUTRAL	NA	525	Too-Many
TCGA.AA.3860	14	22977221	25256968	722	0.0661	NEUTRAL	NA	80	"ABHD4,ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,GZMB,GZMH,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A7,SLC7A8,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AG.3882	14	22977221	34451266	3737	-0.3537	NEUTRAL	NA	98	"ABHD4,ACIN1,ADCY4,AJUBA,AKAP6,AP1G2,AP4S1,ARHGAP5,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,COCH,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,DTD2,EFS,EGLN3,EMC9,FITM1,FOXG1,G2E3,GMPR2,GPR33,GZMB,GZMH,HAUS4,HEATR5A,HECTD1,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NOVA1,NPAS3,NRL,NUBPL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRKD1,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SCFD1,SDR39U1,SLC22A17,SLC7A7,SLC7A8,STRN3,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.3831	14	22977221	50024138	7970	0.0089	NEUTRAL	NA	140	Too-Many
TCGA.AG.3881	14	22977221	69949095	14422	0.0579	NEUTRAL	NA	275	Too-Many
TCGA.AA.3664	14	22977221	107285436	26480	0.0019	NEUTRAL	NA	525	Too-Many
TCGA.AA.3966	14	22977221	107285436	26438	0.0713	NEUTRAL	NA	525	Too-Many
TCGA.AA.3977	14	22977248	55855006	9934	-0.0342	NEUTRAL	NA	191	Too-Many
TCGA.AA.3692	14	22977248	107285436	26472	0.0141	NEUTRAL	NA	525	Too-Many
TCGA.AA.3870	14	22978334	94010764	22344	-0.0356	NEUTRAL	NA	418	Too-Many
TCGA.AA.3695	14	22978576	107283008	26472	0.014	NEUTRAL	NA	525	Too-Many
TCGA.AG.3883	14	22978576	107285436	26472	-0.2974	NEUTRAL	NA	525	Too-Many
TCGA.AG.3902	14	22978759	25781744	969	0.021	NEUTRAL	NA	81	"ABHD4,ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,GZMB,GZMH,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A7,SLC7A8,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.3854	14	22978759	63211349	12550	-0.0009	NEUTRAL	NA	231	Too-Many
TCGA.AA.3867	14	22978774	23284167	138	0.0934	NEUTRAL	NA	4	"ABHD4,DAD1,OXA1L,SLC7A7"
TCGA.AG.3726	14	22978774	41468932	5748	-0.005	NEUTRAL	NA	129	Too-Many
TCGA.AA.3841	14	22983222	41606898	5815	-0.4056	NEUTRAL	NA	129	Too-Many
TCGA.AA.3846	14	22983222	46301798	6911	-0.4176	NEUTRAL	NA	138	Too-Many
TCGA.A6.3807	14	22983222	54056981	9312	-0.3667	NEUTRAL	NA	177	Too-Many
TCGA.AG.3584	14	22983222	57563518	10755	-0.0316	NEUTRAL	NA	196	Too-Many
TCGA.AA.3558	14	22983222	69110529	14135	0.1978	NEUTRAL	NA	268	Too-Many
TCGA.AA.3679	14	22983222	69704661	14359	-1.00E-04	NEUTRAL	NA	272	Too-Many
TCGA.AA.3696	14	22983222	99178142	24742	-0.03	NEUTRAL	NA	453	Too-Many
TCGA.AA.3543	14	22983222	107285436	26430	-0.0035	NEUTRAL	NA	525	Too-Many
TCGA.AA.3549	14	22983222	107285436	26470	-0.0182	NEUTRAL	NA	525	Too-Many
TCGA.AA.3555	14	22983222	107285436	26464	0.0037	NEUTRAL	NA	525	Too-Many
TCGA.AA.3678	14	22983222	107285436	26472	-0.4919	NEUTRAL	NA	525	Too-Many
TCGA.AA.3684	14	22983222	107285436	26464	-0.0061	NEUTRAL	NA	525	Too-Many
TCGA.AA.3685	14	22983222	107285436	26469	-0.2022	NEUTRAL	NA	525	Too-Many
TCGA.AA.3812	14	22983222	107285436	26467	-0.0022	NEUTRAL	NA	525	Too-Many
TCGA.AA.3821	14	22983222	107285436	26409	-0.0133	NEUTRAL	NA	525	Too-Many
TCGA.AA.3842	14	22983222	107285436	26433	-0.1498	NEUTRAL	NA	525	Too-Many
TCGA.AA.3851	14	22983222	107285436	26406	0.2982	NEUTRAL	NA	525	Too-Many
TCGA.AA.3877	14	22983222	107285436	26441	-0.009	NEUTRAL	NA	525	Too-Many
TCGA.AA.3947	14	22983222	107285436	26410	0	NEUTRAL	NA	525	Too-Many
TCGA.AA.3950	14	22983222	107285436	26438	0.0032	NEUTRAL	NA	525	Too-Many
TCGA.AA.3968	14	22983222	107285436	26432	-0.4243	NEUTRAL	NA	525	Too-Many
TCGA.AA.3973	14	22983222	107285436	26440	0.0083	NEUTRAL	NA	525	Too-Many
TCGA.AA.3984	14	22983222	107285436	26400	0.0019	NEUTRAL	NA	525	Too-Many
TCGA.AG.3583	14	22983222	107285436	25771	-0.0191	NEUTRAL	NA	525	Too-Many
TCGA.AG.3885	14	22983222	107285436	26461	-0.1091	NEUTRAL	NA	525	Too-Many
TCGA.AA.3556	14	22988021	33549936	3187	-0.1493	NEUTRAL	NA	97	"ABHD4,ACIN1,ADCY4,AJUBA,AKAP6,AP1G2,AP4S1,ARHGAP5,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,COCH,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,DTD2,EFS,EMC9,FITM1,FOXG1,G2E3,GMPR2,GPR33,GZMB,GZMH,HAUS4,HEATR5A,HECTD1,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NOVA1,NPAS3,NRL,NUBPL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRKD1,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SCFD1,SDR39U1,SLC22A17,SLC7A7,SLC7A8,STRN3,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AG.3728	14	22988021	107145271	26437	0.0801	NEUTRAL	NA	525	Too-Many
TCGA.AA.3673	14	22988021	107285436	26469	-0.0831	NEUTRAL	NA	525	Too-Many
TCGA.AA.3837	14	22988021	107285436	26469	5.00E-04	NEUTRAL	NA	525	Too-Many
TCGA.AF.2692	14	22988021	107285436	26459	-0.4045	NEUTRAL	NA	525	Too-Many
TCGA.AG.3575	14	22988021	107285436	26467	-0.0636	NEUTRAL	NA	525	Too-Many
TCGA.AY.A8YK	14	22988021	107285436	26448	-0.44	NEUTRAL	NA	525	Too-Many
TCGA.AA.3979	14	22988570	23304093	137	0.0742	NEUTRAL	NA	5	"ABHD4,DAD1,MRPL52,OXA1L,SLC7A7"
TCGA.AA.3675	14	22988570	107285436	26465	0.0006	NEUTRAL	NA	525	Too-Many
TCGA.AA.3814	14	22988570	107285436	26470	-0.0323	NEUTRAL	NA	525	Too-Many
TCGA.AA.3976	14	22988570	107285436	26429	-0.492	NEUTRAL	NA	525	Too-Many
TCGA.AG.3580	14	22988570	107285436	26460	0.006	NEUTRAL	NA	525	Too-Many
TCGA.AA.3530	14	22993719	24170288	365	-0.1773	NEUTRAL	NA	38	"ABHD4,ACIN1,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CMTM5,DAD1,DHRS2,EFS,HAUS4,HOMEZ,IL25,JPH4,LRP10,MMP14,MRPL52,MYH6,MYH7,NGDN,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A7,SLC7A8,THTPA,ZFHX2"
TCGA.AA.3715	14	22993719	107285436	26465	-0.0004	NEUTRAL	NA	525	Too-Many
TCGA.AA.3848	14	22993719	107285436	26465	0.0048	NEUTRAL	NA	525	Too-Many
TCGA.AA.3955	14	22993719	107285436	26434	0.0018	NEUTRAL	NA	525	Too-Many
TCGA.AA.3855	14	22997832	107285436	26410	0	NEUTRAL	NA	525	Too-Many
TCGA.AA.3941	14	22999541	23002683	5	-0.1479	NEUTRAL	NA	0	None
TCGA.AA.3872	14	22999557	25159486	661	0.1488	NEUTRAL	NA	80	"ABHD4,ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,GZMB,GZMH,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A7,SLC7A8,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.3875	14	22999557	35837214	4092	-0.1913	NEUTRAL	NA	108	Too-Many
TCGA.AA.3710	14	22999557	107285436	26438	-0.0049	NEUTRAL	NA	525	Too-Many
TCGA.AG.3574	14	23002683	107285436	26456	-0.0056	NEUTRAL	NA	525	Too-Many
TCGA.AG.3878	14	23002683	107285436	26460	0.0112	NEUTRAL	NA	525	Too-Many
TCGA.AG.3599	14	23004709	67671292	13672	0.0076	NEUTRAL	NA	255	Too-Many
TCGA.AG.A01W.01A	14	23008673	23600510	68	-0.1249	NEUTRAL	NA	20	"ABHD4,ACIN1,AJUBA,C14orf119,C14orf93,CDH24,CEBPE,DAD1,HAUS4,LRP10,MMP14,MRPL52,OXA1L,PRMT5,PSMB11,PSMB5,RBM23,REM2,SLC7A7,SLC7A8"
TCGA.AG.3909.01A	14	23016408	23078581	8	-0.4742	NEUTRAL	NA	2	"ABHD4,DAD1"
TCGA.AZ.4614	14	23027377	77435050	16633	-0.1631	NEUTRAL	NA	350	Too-Many
TCGA.A6.6649	14	23077540	23122599	26	-0.2736	NEUTRAL	NA	1	ABHD4
TCGA.AG.3891.01A	14	23078581	23522654	90	-0.0746	NEUTRAL	NA	15	"ABHD4,AJUBA,C14orf93,CDH24,HAUS4,LRP10,MMP14,MRPL52,OXA1L,PRMT5,PSMB11,PSMB5,RBM23,REM2,SLC7A7"
TCGA.A6.6648	14	23081925	23114910	21	-0.441	NEUTRAL	NA	0	None
TCGA.A6.5657	14	23099389	107285436	26320	-0.0009	NEUTRAL	NA	523	Too-Many
TCGA.AF.A56L	14	23099389	107285436	26310	-0.1886	NEUTRAL	NA	523	Too-Many
TCGA.AY.A71X	14	23099684	93400860	22154	-0.0011	NEUTRAL	NA	408	Too-Many
TCGA.A6.6648	14	23120535	25270334	647	0.105	NEUTRAL	NA	78	"ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,GZMB,GZMH,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A7,SLC7A8,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.A6.6649	14	23129206	28545379	1718	0.2335	NEUTRAL	NA	80	"ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,GZMB,GZMH,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NOVA1,NRL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A7,SLC7A8,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.A6.6653	14	23129206	34874000	3842	0.008	NEUTRAL	NA	96	"ACIN1,ADCY4,AJUBA,AKAP6,AP1G2,AP4S1,ARHGAP5,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,COCH,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,DTD2,EFS,EGLN3,EMC9,FITM1,FOXG1,G2E3,GMPR2,GPR33,GZMB,GZMH,HAUS4,HEATR5A,HECTD1,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NOVA1,NPAS3,NRL,NUBPL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRKD1,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SCFD1,SDR39U1,SLC22A17,SLC7A7,SLC7A8,STRN3,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.A6.6141	14	23130096	107285436	26361	0.0021	NEUTRAL	NA	523	Too-Many
TCGA.AG.4009.01A	14	23235702	23424240	66	-0.0999	NEUTRAL	NA	9	"HAUS4,LRP10,MMP14,MRPL52,OXA1L,PRMT5,RBM23,REM2,SLC7A7"
TCGA.AA.A01K.01A	14	23236430	23247950	14	-0.1351	NEUTRAL	NA	2	"OXA1L,SLC7A7"
TCGA.CK.5914.01A	14	23299044	23420732	50	-0.4151	NEUTRAL	NA	7	"HAUS4,LRP10,MMP14,MRPL52,PRMT5,RBM23,REM2"
TCGA.AA.A01Q.01A	14	23302561	23314433	10	-0.4963	NEUTRAL	NA	2	"MMP14,MRPL52"
TCGA.AG.A00C.01A	14	23302561	23354413	19	-0.1086	NEUTRAL	NA	4	"LRP10,MMP14,MRPL52,REM2"
TCGA.AA.A01Q.01A	14	23314898	23612247	85	-0.1057	NEUTRAL	NA	15	"ACIN1,AJUBA,C14orf119,C14orf93,CDH24,CEBPE,HAUS4,LRP10,MMP14,PRMT5,PSMB11,PSMB5,RBM23,REM2,SLC7A8"
TCGA.AA.3867	14	23319171	24947966	455	0.0651	NEUTRAL	NA	70	"ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMTM5,CPNE6,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A8,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AG.A00C.01A	14	23355183	23419484	26	-0.5109	NEUTRAL	NA	4	"HAUS4,PRMT5,RBM23,REM2"
TCGA.AG.A01N.01A	14	23355775	24911876	458	-0.4681	NEUTRAL	NA	69	"ACIN1,ADCY4,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMTM5,CPNE6,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,HAUS4,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,PABPN1,PCK2,PPP1R3E,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A8,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AG.A023.01A	14	23393189	77928933	3107	-0.0701	NEUTRAL	NA	353	Too-Many
TCGA.AA.A01I.01A	14	23393189	107282751	4622	-0.1836	NEUTRAL	NA	516	Too-Many
TCGA.AA.3979	14	23404322	23766590	70	0.2462	NEUTRAL	NA	13	"ACIN1,AJUBA,C14orf119,C14orf93,CDH24,CEBPE,HAUS4,HOMEZ,PPP1R3E,PSMB11,PSMB5,RNF212B,SLC7A8"
TCGA.AA.A010.01A	14	23416313	23467584	20	-0.5021	NEUTRAL	NA	3	"AJUBA,C14orf93,HAUS4"
TCGA.AG.A00C.01A	14	23420732	23566826	48	-0.1892	NEUTRAL	NA	8	"ACIN1,AJUBA,C14orf119,C14orf93,CDH24,HAUS4,PSMB11,PSMB5"
TCGA.AG.3611.01A	14	23442605	23467584	13	0.1132	NEUTRAL	NA	2	"AJUBA,C14orf93"
TCGA.CK.5914.01A	14	23465185	23530241	19	-0.1921	NEUTRAL	NA	5	"ACIN1,C14orf93,CDH24,PSMB11,PSMB5"
TCGA.AG.3611.01A	14	23495251	23511407	4	-0.2481	NEUTRAL	NA	2	"PSMB11,PSMB5"
TCGA.AG.3611.01A	14	23518187	24612558	245	0.0417	NEUTRAL	NA	34	"ACIN1,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,CDH24,CEBPE,CMTM5,CPNE6,DCAF11,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,HOMEZ,IL25,JPH4,LRRC16B,MYH6,MYH7,NGDN,NRL,PABPN1,PCK2,PPP1R3E,PSME1,RNF212B,SLC22A17,SLC7A8,THTPA,ZFHX2"
TCGA.AA.3862.01A	14	23518804	36094516	796	-0.2109	NEUTRAL	NA	96	"ACIN1,ADCY4,AKAP6,AP1G2,AP4S1,ARHGAP5,BAZ1A,BCL2L2,BCL2L2-PABPN1,C14orf119,CBLN3,CDH24,CEBPE,CFL2,CHMP4A,CIDEB,CMA1,CMTM5,COCH,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,DTD2,EAPP,EFS,EGLN3,EMC9,FAM177A1,FITM1,FOXG1,G2E3,GMPR2,GPR33,GZMB,GZMH,HEATR5A,HECTD1,HOMEZ,IL25,INSM2,IPO4,IRF9,JPH4,KHNYN,KIAA0391,LRRC16B,LTB4R,LTB4R2,MDP1,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NFKBIA,NGDN,NOP9,NOVA1,NPAS3,NRL,NUBPL,NYNRIN,PABPN1,PCK2,PPP1R3E,PPP2R3C,PRKD1,PSMA6,PSME1,PSME2,RABGGTA,RALGAPA1,REC8,RIPK3,RNF212B,RNF31,SCFD1,SDR39U1,SLC22A17,SLC7A8,SNX6,SPTSSA,SRP54,STRN3,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AG.3891.01A	14	23523349	23538663	13	0.3629	NEUTRAL	NA	2	"ACIN1,CDH24"
TCGA.AG.4009.01A	14	23538663	23559139	7	-0.4042	NEUTRAL	NA	1	ACIN1
TCGA.CK.5914.01A	14	23538663	23559690	10	-0.2143	NEUTRAL	NA	1	ACIN1
TCGA.AG.3906.01A	14	23538663	23777983	27	0.1191	NEUTRAL	NA	9	"ACIN1,BCL2L2,BCL2L2-PABPN1,C14orf119,CEBPE,HOMEZ,PPP1R3E,RNF212B,SLC7A8"
TCGA.AF.3914.01A	14	23538663	24601408	230	-0.2578	NEUTRAL	NA	31	"ACIN1,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,CEBPE,CMTM5,CPNE6,DCAF11,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,FITM1,HOMEZ,IL25,JPH4,LRRC16B,MYH6,MYH7,NGDN,NRL,PABPN1,PCK2,PPP1R3E,RNF212B,SLC22A17,SLC7A8,THTPA,ZFHX2"
TCGA.AG.3891.01A	14	23547328	23794379	31	-0.2119	NEUTRAL	NA	10	"ACIN1,BCL2L2,BCL2L2-PABPN1,C14orf119,CEBPE,HOMEZ,PABPN1,PPP1R3E,RNF212B,SLC7A8"
TCGA.AA.A010.01A	14	23559139	23569466	8	-0.1467	NEUTRAL	NA	2	"ACIN1,C14orf119"
TCGA.AG.4009.01A	14	23559690	23744732	18	0.0334	NEUTRAL	NA	6	"ACIN1,C14orf119,CEBPE,HOMEZ,RNF212B,SLC7A8"
TCGA.CK.5914.01A	14	23586668	23790712	32	0.0387	NEUTRAL	NA	8	"BCL2L2,BCL2L2-PABPN1,CEBPE,HOMEZ,PABPN1,PPP1R3E,RNF212B,SLC7A8"
TCGA.AG.A01W.01A	14	23635910	23704856	52	0.0845	NEUTRAL	NA	1	SLC7A8
TCGA.AA.A010.01A	14	23709508	23713471	3	0.0908	NEUTRAL	NA	1	RNF212B
TCGA.AA.A00N.01A	14	23709508	23790712	18	-0.3889	NEUTRAL	NA	6	"BCL2L2,BCL2L2-PABPN1,HOMEZ,PABPN1,PPP1R3E,RNF212B"
TCGA.AG.A01W.01A	14	23721763	23854672	78	-0.2512	NEUTRAL	NA	11	"BCL2L2,BCL2L2-PABPN1,CMTM5,EFS,HOMEZ,IL25,MYH6,PABPN1,PPP1R3E,RNF212B,SLC22A17"
TCGA.AA.3930.01A	14	23776935	23865855	46	-0.1711	NEUTRAL	NA	8	"BCL2L2,BCL2L2-PABPN1,CMTM5,EFS,IL25,MYH6,PABPN1,SLC22A17"
TCGA.AA.3979	14	23778697	25438795	604	0.0067	NEUTRAL	NA	58	"ADCY4,AP1G2,BCL2L2,BCL2L2-PABPN1,CBLN3,CHMP4A,CIDEB,CMA1,CMTM5,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,GZMB,GZMH,IL25,IPO4,IRF9,JPH4,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,PABPN1,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,SLC22A17,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.A01Q.01A	14	23790712	23820913	14	-0.3536	NEUTRAL	NA	3	"BCL2L2-PABPN1,PABPN1,SLC22A17"
TCGA.AG.A00C.01A	14	23791358	23901614	84	-0.2524	NEUTRAL	NA	8	"BCL2L2-PABPN1,CMTM5,EFS,IL25,MYH6,MYH7,PABPN1,SLC22A17"
TCGA.AG.A02G.01A	14	23794379	23902754	82	-0.4402	NEUTRAL	NA	8	"BCL2L2-PABPN1,CMTM5,EFS,IL25,MYH6,MYH7,PABPN1,SLC22A17"
TCGA.CK.5914.01A	14	23815827	23890124	66	-0.2543	NEUTRAL	NA	6	"CMTM5,EFS,IL25,MYH6,MYH7,SLC22A17"
TCGA.AG.3906.01A	14	23816293	24533408	157	0.1422	NEUTRAL	NA	16	"AP1G2,CMTM5,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,IL25,JPH4,LRRC16B,MYH6,MYH7,NGDN,SLC22A17,THTPA,ZFHX2"
TCGA.AA.3681	14	23825712	98484206	24087	-0.0101	NEUTRAL	NA	425	Too-Many
TCGA.AG.3891.01A	14	23828519	24113986	106	-0.2865	NEUTRAL	NA	11	"AP1G2,CMTM5,DHRS2,EFS,IL25,JPH4,MYH6,MYH7,NGDN,THTPA,ZFHX2"
TCGA.AG.4009.01A	14	23844796	23866125	26	-0.3125	NEUTRAL	NA	3	"CMTM5,IL25,MYH6"
TCGA.DM.A28C	14	23850901	67335424	13367	0.0125	NEUTRAL	NA	224	Too-Many
TCGA.AG.A032.01A	14	23855090	24708983	236	-0.394	NEUTRAL	NA	32	"AP1G2,CHMP4A,CPNE6,DCAF11,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,IPO4,IRF9,JPH4,LRRC16B,MDP1,MYH6,MYH7,NEDD8,NEDD8-MDP1,NGDN,NRL,PCK2,PSME1,PSME2,REC8,RNF31,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AG.A01W.01A	14	23857426	24113275	67	0.1471	NEUTRAL	NA	8	"AP1G2,DHRS2,JPH4,MYH6,MYH7,NGDN,THTPA,ZFHX2"
TCGA.AA.A010.01A	14	23858087	23873910	19	-0.0211	NEUTRAL	NA	1	MYH6
TCGA.AA.A00N.01A	14	23863300	23900063	43	-0.5136	NEUTRAL	NA	2	"MYH6,MYH7"
TCGA.AG.3909.01A	14	23865452	23900063	42	-0.1675	NEUTRAL	NA	2	"MYH6,MYH7"
TCGA.AA.3930.01A	14	23866125	23881970	14	0.285	NEUTRAL	NA	2	"MYH6,MYH7"
TCGA.AG.4009.01A	14	23866690	23939190	45	0.106	NEUTRAL	NA	3	"MYH6,MYH7,NGDN"
TCGA.AA.A01Q.01A	14	23871623	23946382	46	-0.1183	NEUTRAL	NA	3	"MYH6,MYH7,NGDN"
TCGA.CK.5914.01A	14	23891342	23900063	14	0.2974	NEUTRAL	NA	1	MYH7
TCGA.AA.A00Q.01A	14	23894459	30107637	308	-0.1837	NEUTRAL	NA	53	"ADCY4,AP1G2,CBLN3,CHMP4A,CIDEB,CMA1,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,FOXG1,GMPR2,GZMB,GZMH,IPO4,IRF9,JPH4,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NOVA1,NRL,NYNRIN,PCK2,PRKD1,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.3524	14	23897506	23955126	22	-0.2038	NEUTRAL	NA	2	"MYH7,NGDN"
TCGA.AA.3930.01A	14	23902244	24677123	183	0.0919	NEUTRAL	NA	25	"AP1G2,CPNE6,DCAF11,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,IPO4,IRF9,JPH4,LRRC16B,MYH7,NGDN,NRL,PCK2,PSME1,PSME2,REC8,RNF31,THTPA,TM9SF1,TSSK4,ZFHX2"
TCGA.CK.5914.01A	14	23939190	23947134	7	0.2029	NEUTRAL	NA	1	NGDN
TCGA.AG.4009.01A	14	23940053	24025945	7	-0.2497	NEUTRAL	NA	3	"NGDN,THTPA,ZFHX2"
TCGA.AG.A02G.01A	14	23940053	107282751	4485	-0.4035	NEUTRAL	NA	493	Too-Many
TCGA.AA.3844	14	23942534	24417398	175	-0.049	NEUTRAL	NA	6	"AP1G2,DHRS2,JPH4,NGDN,THTPA,ZFHX2"
TCGA.AA.A010.01A	14	23947134	24035232	15	-0.4997	NEUTRAL	NA	4	"AP1G2,NGDN,THTPA,ZFHX2"
TCGA.AG.A00C.01A	14	23947134	24040959	19	-0.1884	NEUTRAL	NA	5	"AP1G2,JPH4,NGDN,THTPA,ZFHX2"
TCGA.AA.3524	14	23960757	27800462	1342	-0.2686	NEUTRAL	NA	49	"ADCY4,AP1G2,CBLN3,CHMP4A,CIDEB,CMA1,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,GZMB,GZMH,IPO4,IRF9,JPH4,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NOVA1,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.3850	14	23964202	25183180	383	0.16375	NEUTRAL	NA	47	"ADCY4,AP1G2,CBLN3,CHMP4A,CIDEB,CMA1,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,GZMB,GZMH,IPO4,IRF9,JPH4,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.A00N.01A	14	24025945	24046312	20	-0.5104	NEUTRAL	NA	3	"AP1G2,JPH4,THTPA"
TCGA.AA.A010.01A	14	24036313	24040959	4	-0.0614	NEUTRAL	NA	2	"AP1G2,JPH4"
TCGA.AA.A01Q.01A	14	24036313	24040959	4	-0.1573	NEUTRAL	NA	2	"AP1G2,JPH4"
TCGA.AG.3909.01A	14	24036313	24422947	14	-0.0726	NEUTRAL	NA	4	"AP1G2,DHRS2,DHRS4,JPH4"
TCGA.AA.A01Q.01A	14	24044867	24506905	24	0.2179	NEUTRAL	NA	5	"DHRS2,DHRS4,DHRS4L1,DHRS4L2,JPH4"
TCGA.CK.5914.01A	14	24046312	24424206	11	0.1849	NEUTRAL	NA	3	"DHRS2,DHRS4,JPH4"
TCGA.CK.6747	14	24052282	107285436	26039	-0.0064	NEUTRAL	NA	488	Too-Many
TCGA.AA.3982	14	24101431	24529889	135	-0.0115	NEUTRAL	NA	5	"DHRS2,DHRS4,DHRS4L1,DHRS4L2,LRRC16B"
TCGA.AG.4009.01A	14	24108033	24436391	14	-0.0139	NEUTRAL	NA	2	"DHRS2,DHRS4"
TCGA.AA.3811	14	24119860	24529889	122	-0.1261	NEUTRAL	NA	4	"DHRS4,DHRS4L1,DHRS4L2,LRRC16B"
TCGA.A6.2686	14	24129226	107285436	26069	0.1674	NEUTRAL	NA	487	Too-Many
TCGA.AA.3530	14	24258980	24954165	192	-0.1886	NEUTRAL	NA	38	"ADCY4,CBLN3,CHMP4A,CIDEB,CPNE6,DCAF11,DHRS1,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,IPO4,IRF9,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.AA.3844	14	24423581	24953749	144	0.2533	NEUTRAL	NA	38	"ADCY4,CBLN3,CHMP4A,CIDEB,CPNE6,DCAF11,DHRS1,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,IPO4,IRF9,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.CK.5914.01A	14	24429072	24506905	14	-0.4849	NEUTRAL	NA	3	"DHRS4,DHRS4L1,DHRS4L2"
TCGA.AG.A00C.01A	14	24435440	24899886	240	-0.2682	NEUTRAL	NA	37	"ADCY4,CBLN3,CHMP4A,CIDEB,CPNE6,DCAF11,DHRS1,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,IPO4,IRF9,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.A6.6142	14	24489234	107285436	26001	-0.3207	NEUTRAL	NA	485	Too-Many
TCGA.AA.3492	14	24489234	107285436	25980	-0.0014	NEUTRAL	NA	485	Too-Many
TCGA.AF.2693	14	24489234	107285436	25991	0.0099	NEUTRAL	NA	485	Too-Many
TCGA.D5.6924	14	24489234	107285436	25941	-0.2999	NEUTRAL	NA	485	Too-Many
TCGA.AG.4009.01A	14	24505673	24530658	23	-0.3301	NEUTRAL	NA	2	"DHRS4L1,LRRC16B"
TCGA.AG.3891.01A	14	24506905	24977331	249	-0.2906	NEUTRAL	NA	37	"ADCY4,CBLN3,CHMP4A,CIDEB,CMA1,CPNE6,DCAF11,DHRS1,DHRS4L1,EMC9,FITM1,GMPR2,IPO4,IRF9,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.AA.A01Q.01A	14	24511822	24605394	67	-0.3915	NEUTRAL	NA	8	"CPNE6,DCAF11,DHRS4L1,FITM1,LRRC16B,NRL,PCK2,PSME1"
TCGA.AA.A010.01A	14	24511822	24635288	101	-0.2336	NEUTRAL	NA	12	"CPNE6,DCAF11,DHRS4L1,EMC9,FITM1,IRF9,LRRC16B,NRL,PCK2,PSME1,PSME2,RNF31"
TCGA.AA.A00N.01A	14	24521316	24568210	43	-0.4933	NEUTRAL	NA	4	"CPNE6,LRRC16B,NRL,PCK2"
TCGA.CK.5914.01A	14	24525457	24542666	22	-0.4219	NEUTRAL	NA	2	"CPNE6,LRRC16B"
TCGA.AG.3909.01A	14	24525457	24551626	32	-0.3328	NEUTRAL	NA	3	"CPNE6,LRRC16B,NRL"
TCGA.AA.3811	14	24539762	24947827	128	0.2513	NEUTRAL	NA	34	"ADCY4,CBLN3,CHMP4A,CIDEB,CPNE6,DCAF11,DHRS1,EMC9,FITM1,GMPR2,IPO4,IRF9,KHNYN,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.AA.3982	14	24539762	24954165	137	0.3299	NEUTRAL	NA	34	"ADCY4,CBLN3,CHMP4A,CIDEB,CPNE6,DCAF11,DHRS1,EMC9,FITM1,GMPR2,IPO4,IRF9,KHNYN,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.CK.5914.01A	14	24544965	24568210	11	-0.4166	NEUTRAL	NA	3	"CPNE6,NRL,PCK2"
TCGA.AG.3906.01A	14	24566089	24769152	130	0.097	NEUTRAL	NA	22	"CHMP4A,DCAF11,DHRS1,EMC9,FITM1,GMPR2,IPO4,IRF9,MDP1,NEDD8,NEDD8-MDP1,NOP9,PCK2,PSME1,PSME2,RABGGTA,REC8,RNF31,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.AG.4009.01A	14	24571925	24601408	17	-0.3283	NEUTRAL	NA	3	"DCAF11,FITM1,PCK2"
TCGA.AG.A01L.01A	14	24584762	24587609	6	-0.3591	NEUTRAL	NA	1	DCAF11
TCGA.AG.A01L.01A	14	24587896	107282751	4425	0.1785	NEUTRAL	NA	480	Too-Many
TCGA.AA.A00N.01A	14	24590522	24605394	5	-0.3306	NEUTRAL	NA	3	"DCAF11,FITM1,PSME1"
TCGA.AA.A01Q.01A	14	24615690	24629478	9	0.1201	NEUTRAL	NA	2	"PSME2,RNF31"
TCGA.AG.3611.01A	14	24620292	53145084	918	0.0684	NEUTRAL	NA	122	Too-Many
TCGA.AF.3914.01A	14	24624319	107282751	4568	-0.2004	NEUTRAL	NA	475	Too-Many
TCGA.AG.4009.01A	14	24632559	24642141	7	-0.345	NEUTRAL	NA	2	"IRF9,REC8"
TCGA.AA.A01Q.01A	14	24642141	24769152	59	-0.1523	NEUTRAL	NA	14	"CHMP4A,DHRS1,GMPR2,IPO4,MDP1,NEDD8,NEDD8-MDP1,NOP9,RABGGTA,REC8,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.AG.4009.01A	14	24644696	24731252	57	-0.0454	NEUTRAL	NA	11	"CHMP4A,GMPR2,IPO4,MDP1,NEDD8,NEDD8-MDP1,REC8,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.AG.3909.01A	14	24675078	24701373	14	0.1429	NEUTRAL	NA	5	"CHMP4A,MDP1,NEDD8,NEDD8-MDP1,TSSK4"
TCGA.AA.3930.01A	14	24701373	24884430	99	0.1341	NEUTRAL	NA	15	"ADCY4,CIDEB,DHRS1,GMPR2,LTB4R,LTB4R2,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NYNRIN,RABGGTA,RIPK3,TGM1,TINF2"
TCGA.AG.3605.01A	14	24707403	101347007	77	-0.358	NEUTRAL	NA	410	Too-Many
TCGA.AG.3909.01A	14	24711124	24735578	14	-0.0304	NEUTRAL	NA	3	"RABGGTA,TGM1,TINF2"
TCGA.CK.5914.01A	14	24711124	24769152	30	-0.104	NEUTRAL	NA	5	"DHRS1,NOP9,RABGGTA,TGM1,TINF2"
TCGA.AG.A032.01A	14	24711124	74762525	2424	-0.4729	NEUTRAL	NA	258	Too-Many
TCGA.AA.A02E.01A	14	24779786	34904355	278	-0.4538	NEUTRAL	NA	33	"ADCY4,AKAP6,AP4S1,ARHGAP5,CBLN3,CIDEB,CMA1,COCH,CTSG,DTD2,EGLN3,FOXG1,G2E3,GPR33,GZMB,GZMH,HEATR5A,HECTD1,KHNYN,LTB4R,LTB4R2,NFATC4,NOVA1,NPAS3,NUBPL,NYNRIN,PRKD1,RIPK3,SCFD1,SDR39U1,SPTSSA,STRN3,STXBP6"
TCGA.CK.5914.01A	14	24791230	24910833	54	-0.3487	NEUTRAL	NA	7	"ADCY4,CBLN3,KHNYN,NFATC4,NYNRIN,RIPK3,SDR39U1"
TCGA.AG.A01J.01A	14	24791230	107282751	4190	-0.0721	NEUTRAL	NA	456	Too-Many
TCGA.AG.3906.01A	14	24800177	24846801	22	0.038	NEUTRAL	NA	3	"ADCY4,NFATC4,RIPK3"
TCGA.AA.A010.01A	14	24800964	24803663	3	0.0724	NEUTRAL	NA	1	ADCY4
TCGA.AA.A01Q.01A	14	24808174	24906202	27	-0.2453	NEUTRAL	NA	5	"CBLN3,KHNYN,NFATC4,NYNRIN,RIPK3"
TCGA.AA.A00N.01A	14	24808174	24910833	34	-0.4551	NEUTRAL	NA	6	"CBLN3,KHNYN,NFATC4,NYNRIN,RIPK3,SDR39U1"
TCGA.AA.A02H.01A	14	24836213	34904355	252	-0.2186	NEUTRAL	NA	28	"AKAP6,AP4S1,ARHGAP5,CBLN3,CMA1,COCH,CTSG,DTD2,EGLN3,FOXG1,G2E3,GPR33,GZMB,GZMH,HEATR5A,HECTD1,KHNYN,NFATC4,NOVA1,NPAS3,NUBPL,NYNRIN,PRKD1,SCFD1,SDR39U1,SPTSSA,STRN3,STXBP6"
TCGA.AG.A025.01A	14	24836213	50362994	719	0.061	NEUTRAL	NA	79	"AKAP6,AP4S1,ARF6,ARHGAP5,BAZ1A,BRMS1L,C14orf28,CBLN3,CFL2,CLEC14A,CMA1,COCH,CTAGE5,CTSG,DNAAF2,DTD2,EAPP,EGLN3,FAM177A1,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FOXG1,FSCB,G2E3,GEMIN2,GPR33,GZMB,GZMH,HEATR5A,HECTD1,INSM2,KHNYN,KIAA0391,KLHDC1,KLHDC2,KLHL28,LRFN5,LRR1,MBIP,MDGA2,MGAT2,MIA2,MIPOL1,MIS18BP1,NEMF,NFATC4,NFKBIA,NKX2-1,NKX2-8,NOVA1,NPAS3,NUBPL,NYNRIN,PAX9,PNN,POLE2,PPP2R3C,PRKD1,PRPF39,PSMA6,RALGAPA1,RPL10L,RPL36AL,RPS29,SCFD1,SDR39U1,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,STRN3,STXBP6,TRAPPC6B"
TCGA.AA.A010.01A	14	24837476	24868413	11	0.2354	NEUTRAL	NA	2	"NFATC4,NYNRIN"
TCGA.AA.A01F.01A	14	24841640	24906202	21	0.0806	NEUTRAL	NA	4	"CBLN3,KHNYN,NFATC4,NYNRIN"
TCGA.AG.A014.01A	14	24842854	107282751	4231	0.0447	NEUTRAL	NA	454	Too-Many
TCGA.AA.3930.01A	14	24896958	26949136	43	-0.3353	NEUTRAL	NA	9	"CBLN3,CMA1,CTSG,GZMB,GZMH,KHNYN,NOVA1,SDR39U1,STXBP6"
TCGA.AA.3967.01A	14	24901722	39556086	460	-0.3624	NEUTRAL	NA	49	"AKAP6,AP4S1,ARHGAP5,BAZ1A,BRMS1L,CFL2,CLEC14A,CMA1,COCH,CTSG,DTD2,EAPP,EGLN3,FAM177A1,FOXA1,FOXG1,G2E3,GPR33,GZMB,GZMH,HEATR5A,HECTD1,INSM2,KHNYN,KIAA0391,MBIP,MIPOL1,NFKBIA,NKX2-1,NKX2-8,NOVA1,NPAS3,NUBPL,PAX9,PPP2R3C,PRKD1,PSMA6,RALGAPA1,SCFD1,SDR39U1,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,STRN3,STXBP6"
TCGA.AG.A00Y.01A	14	24901722	50606619	718	-0.1612	NEUTRAL	NA	78	"AKAP6,AP4S1,ARF6,ARHGAP5,BAZ1A,BRMS1L,C14orf28,CFL2,CLEC14A,CMA1,COCH,CTAGE5,CTSG,DNAAF2,DTD2,EAPP,EGLN3,FAM177A1,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FOXG1,FSCB,G2E3,GEMIN2,GPR33,GZMB,GZMH,HEATR5A,HECTD1,INSM2,KHNYN,KIAA0391,KLHDC1,KLHDC2,KLHL28,LRFN5,LRR1,MBIP,MDGA2,MGAT2,MIA2,MIPOL1,MIS18BP1,NEMF,NFKBIA,NKX2-1,NKX2-8,NOVA1,NPAS3,NUBPL,PAX9,PNN,POLE2,PPP2R3C,PRKD1,PRPF39,PSMA6,RALGAPA1,RPL10L,RPL36AL,RPS29,SCFD1,SDR39U1,SEC23A,SFTA3,SLC25A21,SNX6,SOS2,SPTSSA,SRP54,SSTR1,STRN3,STXBP6,TRAPPC6B,VCPKMT"
TCGA.A6.3810.01A	14	24909279	27066498	36	0.0646	NEUTRAL	NA	8	"CMA1,CTSG,GZMB,GZMH,KHNYN,NOVA1,SDR39U1,STXBP6"
TCGA.AA.A01F.01A	14	24909279	104515930	3593	-0.3014	NEUTRAL	NA	425	Too-Many
TCGA.AA.A01K.01A	14	24911876	101493388	3673	-0.3058	NEUTRAL	NA	395	Too-Many
TCGA.AA.3811	14	24947966	25626410	309	-0.1771	NEUTRAL	NA	5	"CMA1,CTSG,GZMB,GZMH,STXBP6"
TCGA.AA.3867	14	24950823	26895665	775	-0.1965	NEUTRAL	NA	5	"CMA1,CTSG,GZMB,GZMH,STXBP6"
TCGA.AA.3844	14	24953852	25626148	300	-0.1528	NEUTRAL	NA	5	"CMA1,CTSG,GZMB,GZMH,STXBP6"
TCGA.AA.3941	14	24954201	25193475	75	0.3257	NEUTRAL	NA	4	"CMA1,CTSG,GZMB,GZMH"
TCGA.AA.3982	14	24954201	25618700	296	-0.112	NEUTRAL	NA	5	"CMA1,CTSG,GZMB,GZMH,STXBP6"
TCGA.AA.A010.01A	14	24974684	24977331	5	-0.2912	NEUTRAL	NA	1	CMA1
TCGA.AG.4009.01A	14	24974684	38678556	424	-0.4413	NEUTRAL	NA	45	"AKAP6,AP4S1,ARHGAP5,BAZ1A,BRMS1L,CFL2,CMA1,COCH,CTSG,DTD2,EAPP,EGLN3,FAM177A1,FOXA1,FOXG1,G2E3,GPR33,GZMB,GZMH,HEATR5A,HECTD1,INSM2,KIAA0391,MBIP,MIPOL1,NFKBIA,NKX2-1,NKX2-8,NOVA1,NPAS3,NUBPL,PAX9,PPP2R3C,PRKD1,PSMA6,RALGAPA1,SCFD1,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,STRN3,STXBP6"
TCGA.AG.A01N.01A	14	24974684	93177961	3263	-0.1816	NEUTRAL	NA	332	Too-Many
TCGA.AG.3906.01A	14	25042824	31405660	100	-0.2136	NEUTRAL	NA	11	"COCH,CTSG,FOXG1,G2E3,GZMB,GZMH,NOVA1,PRKD1,SCFD1,STRN3,STXBP6"
TCGA.AA.3872	14	25159683	47417587	6535	-0.1861	NEUTRAL	NA	60	"AKAP6,AP4S1,ARHGAP5,BAZ1A,BRMS1L,C14orf28,CFL2,CLEC14A,COCH,CTAGE5,DTD2,EAPP,EGLN3,FAM177A1,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FOXG1,FSCB,G2E3,GEMIN2,GPR33,HEATR5A,HECTD1,INSM2,KIAA0391,KLHL28,LRFN5,MBIP,MDGA2,MIA2,MIPOL1,MIS18BP1,NFKBIA,NKX2-1,NKX2-8,NOVA1,NPAS3,NUBPL,PAX9,PNN,PPP2R3C,PRKD1,PRPF39,PSMA6,RALGAPA1,RPL10L,SCFD1,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,STRN3,STXBP6,TRAPPC6B"
TCGA.AA.3941	14	25212874	25314752	63	0.2472	NEUTRAL	NA	1	STXBP6
TCGA.AA.3949	14	25249821	25271814	17	-0.2911	NEUTRAL	NA	0	None
TCGA.AA.3860	14	25259952	25271814	14	-0.4313	NEUTRAL	NA	0	None
TCGA.AA.3949	14	25272925	28004629	956	-0.0645	NEUTRAL	NA	2	"NOVA1,STXBP6"
TCGA.AA.3860	14	25272925	29442812	1272	0.3539	NEUTRAL	NA	3	"FOXG1,NOVA1,STXBP6"
TCGA.A6.6648	14	25272925	41606898	5082	0.1386	NEUTRAL	NA	49	"AKAP6,AP4S1,ARHGAP5,BAZ1A,BRMS1L,CFL2,CLEC14A,COCH,CTAGE5,DTD2,EAPP,EGLN3,FAM177A1,FBXO33,FOXA1,FOXG1,G2E3,GEMIN2,GPR33,HEATR5A,HECTD1,INSM2,KIAA0391,MBIP,MIA2,MIPOL1,NFKBIA,NKX2-1,NKX2-8,NOVA1,NPAS3,NUBPL,PAX9,PNN,PPP2R3C,PRKD1,PSMA6,RALGAPA1,SCFD1,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,STRN3,STXBP6,TRAPPC6B"
TCGA.AA.A010.01A	14	25281848	27066498	12	-0.172	NEUTRAL	NA	2	"NOVA1,STXBP6"
TCGA.AA.A01Q.01A	14	25281848	65055848	1399	0.1405	NEUTRAL	NA	164	Too-Many
TCGA.AA.3941	14	25317300	25340848	22	-0.3292	NEUTRAL	NA	1	STXBP6
TCGA.AA.3941	14	25347521	25559822	102	0.3249	NEUTRAL	NA	1	STXBP6
TCGA.AA.3941	14	25561402	29945852	1225	-0.4248	NEUTRAL	NA	2	"FOXG1,NOVA1"
TCGA.AG.3902	14	25783772	99321122	23772	-0.0091	NEUTRAL	NA	372	Too-Many
TCGA.DM.A285	14	26587736	107285436	25158	0.1168	NEUTRAL	NA	444	Too-Many
TCGA.AA.3867	14	26898614	30139224	797	-0.486	NEUTRAL	NA	3	"FOXG1,NOVA1,PRKD1"
TCGA.AG.3909.01A	14	26917113	31344064	62	0.0931	NEUTRAL	NA	6	"COCH,FOXG1,G2E3,NOVA1,PRKD1,SCFD1"
TCGA.AA.3930.01A	14	27064567	34985528	211	0.013	NEUTRAL	NA	19	"AKAP6,AP4S1,ARHGAP5,COCH,DTD2,EAPP,EGLN3,FOXG1,G2E3,GPR33,HEATR5A,HECTD1,NOVA1,NPAS3,NUBPL,PRKD1,SCFD1,SPTSSA,STRN3"
TCGA.A6.3808.01A	14	27064567	36158995	329	-0.3652	NEUTRAL	NA	30	"AKAP6,AP4S1,ARHGAP5,BAZ1A,CFL2,COCH,DTD2,EAPP,EGLN3,FAM177A1,FOXG1,G2E3,GPR33,HEATR5A,HECTD1,INSM2,KIAA0391,NFKBIA,NOVA1,NPAS3,NUBPL,PPP2R3C,PRKD1,PSMA6,RALGAPA1,SCFD1,SNX6,SPTSSA,SRP54,STRN3"
TCGA.AA.3524	14	27869440	31686695	892	-0.2167	NEUTRAL	NA	8	"AP4S1,COCH,FOXG1,G2E3,HECTD1,PRKD1,SCFD1,STRN3"
TCGA.AA.3949	14	28038606	107285436	24740	0.0061	NEUTRAL	NA	443	Too-Many
TCGA.F5.6465	14	28137309	28529305	77	-0.4761	NEUTRAL	NA	0	None
TCGA.AD.6965	14	28370249	101554838	23762	0.0325	NEUTRAL	NA	388	Too-Many
TCGA.F5.6465	14	28539430	30676158	497	0.0231	NEUTRAL	NA	2	"FOXG1,PRKD1"
TCGA.A6.6649	14	28550187	32722586	1014	0.2786	NEUTRAL	NA	13	"AP4S1,ARHGAP5,COCH,DTD2,FOXG1,G2E3,GPR33,HEATR5A,HECTD1,NUBPL,PRKD1,SCFD1,STRN3"
TCGA.QL.A97D	14	28686691	107285436	24616	-0.1494	NEUTRAL	NA	443	Too-Many
TCGA.AG.A01W.01A	14	29171768	30146799	18	-0.0419	NEUTRAL	NA	2	"FOXG1,PRKD1"
TCGA.AG.3893	14	29192420	107285436	24293	-0.2587	NEUTRAL	NA	443	Too-Many
TCGA.A6.3810.01A	14	29236455	34931265	209	-0.2209	NEUTRAL	NA	17	"AKAP6,AP4S1,ARHGAP5,COCH,DTD2,EGLN3,FOXG1,G2E3,GPR33,HEATR5A,HECTD1,NPAS3,NUBPL,PRKD1,SCFD1,SPTSSA,STRN3"
TCGA.A6.2681	14	29442812	29734438	62	-0.436	NEUTRAL	NA	0	None
TCGA.AA.3860	14	29457758	33482255	1154	0.0332	NEUTRAL	NA	14	"AKAP6,AP4S1,ARHGAP5,COCH,DTD2,G2E3,GPR33,HEATR5A,HECTD1,NPAS3,NUBPL,PRKD1,SCFD1,STRN3"
TCGA.A6.2681	14	29736837	60689549	9668	0.0748	NEUTRAL	NA	134	Too-Many
TCGA.AA.3982	14	29896922	30697646	223	-0.2725	NEUTRAL	NA	1	PRKD1
TCGA.AA.3941	14	29962751	31274943	360	0.0343	NEUTRAL	NA	3	"G2E3,PRKD1,SCFD1"
TCGA.CK.5914.01A	14	30046413	31077047	27	0.3146	NEUTRAL	NA	2	"G2E3,PRKD1"
TCGA.AA.A00Q.01A	14	30132868	51111411	621	0.2859	NEUTRAL	NA	75	"AKAP6,AP4S1,ARF6,ARHGAP5,ATL1,ATP5S,BAZ1A,BRMS1L,C14orf28,CDKL1,CFL2,CLEC14A,COCH,CTAGE5,DNAAF2,DTD2,EAPP,EGLN3,FAM177A1,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FSCB,G2E3,GEMIN2,GPR33,HEATR5A,HECTD1,INSM2,KIAA0391,KLHDC1,KLHDC2,KLHL28,L2HGDH,LRFN5,LRR1,MAP4K5,MBIP,MDGA2,MGAT2,MIA2,MIPOL1,MIS18BP1,NEMF,NFKBIA,NKX2-1,NKX2-8,NPAS3,NUBPL,PAX9,PNN,POLE2,PPP2R3C,PRKD1,PRPF39,PSMA6,RALGAPA1,RPL10L,RPL36AL,RPS29,SAV1,SCFD1,SEC23A,SFTA3,SLC25A21,SNX6,SOS2,SPTSSA,SRP54,SSTR1,STRN3,TRAPPC6B,VCPKMT"
TCGA.AA.3867	14	30145431	107285436	24267	-0.1344	NEUTRAL	NA	442	Too-Many
TCGA.AG.A01W.01A	14	30151124	30475404	49	0.2821	NEUTRAL	NA	1	PRKD1
TCGA.AG.A01W.01A	14	30486010	30996202	79	-0.115	NEUTRAL	NA	0	None
TCGA.AA.3979	14	30669762	31936684	301	0.0143	NEUTRAL	NA	8	"AP4S1,COCH,DTD2,G2E3,HEATR5A,HECTD1,SCFD1,STRN3"
TCGA.F5.6465	14	30676838	31294407	181	-0.496	NEUTRAL	NA	2	"G2E3,SCFD1"
TCGA.F5.6864	14	30692839	30701040	8	-0.2945	NEUTRAL	NA	0	None
TCGA.F5.6864	14	30701535	31309220	163	0.3201	NEUTRAL	NA	2	"G2E3,SCFD1"
TCGA.AA.3982	14	30706025	31318178	165	-0.1805	NEUTRAL	NA	2	"G2E3,SCFD1"
TCGA.AA.3811	14	30706025	32337996	365	-0.0962	NEUTRAL	NA	10	"AP4S1,COCH,DTD2,G2E3,GPR33,HEATR5A,HECTD1,NUBPL,SCFD1,STRN3"
TCGA.AA.3844	14	30735709	33043002	644	-0.104	NEUTRAL	NA	12	"AKAP6,AP4S1,ARHGAP5,COCH,DTD2,G2E3,GPR33,HEATR5A,HECTD1,NUBPL,SCFD1,STRN3"
TCGA.AA.3850	14	30765186	31292671	147	-0.26595	NEUTRAL	NA	2	"G2E3,SCFD1"
TCGA.AA.A00L.01A	14	31050203	35343661	149	-0.2391	NEUTRAL	NA	19	"AKAP6,AP4S1,ARHGAP5,BAZ1A,CFL2,COCH,DTD2,EAPP,EGLN3,G2E3,GPR33,HEATR5A,HECTD1,NPAS3,NUBPL,SCFD1,SNX6,SPTSSA,STRN3"
TCGA.AG.3891.01A	14	31061482	31067661	4	0.0811	NEUTRAL	NA	1	G2E3
TCGA.AA.A010.01A	14	31061482	32319268	144	0.3155	NEUTRAL	NA	10	"AP4S1,COCH,DTD2,G2E3,GPR33,HEATR5A,HECTD1,NUBPL,SCFD1,STRN3"
TCGA.AG.3891.01A	14	31070936	34904355	175	-0.4576	NEUTRAL	NA	15	"AKAP6,AP4S1,ARHGAP5,COCH,DTD2,EGLN3,G2E3,GPR33,HEATR5A,HECTD1,NPAS3,NUBPL,SCFD1,SPTSSA,STRN3"
TCGA.CK.5914.01A	14	31081363	31099636	6	-0.4369	NEUTRAL	NA	2	"G2E3,SCFD1"
TCGA.AG.A01W.01A	14	31100350	33974107	53	0.1888	NEUTRAL	NA	12	"AKAP6,AP4S1,ARHGAP5,COCH,DTD2,GPR33,HEATR5A,HECTD1,NPAS3,NUBPL,SCFD1,STRN3"
TCGA.CK.5914.01A	14	31103101	31144133	11	0.0507	NEUTRAL	NA	1	SCFD1
TCGA.AA.3850	14	31293347	32334615	208	0.25645	NEUTRAL	NA	8	"AP4S1,COCH,DTD2,GPR33,HEATR5A,HECTD1,NUBPL,STRN3"
TCGA.F5.6465	14	31307570	33379061	633	0.0249	NEUTRAL	NA	10	"AKAP6,AP4S1,ARHGAP5,COCH,DTD2,GPR33,HEATR5A,HECTD1,NUBPL,STRN3"
TCGA.F5.6864	14	31316653	31548341	52	-0.0331	NEUTRAL	NA	3	"AP4S1,COCH,STRN3"
TCGA.AA.3982	14	31325194	31995736	120	0.2691	NEUTRAL	NA	7	"AP4S1,COCH,DTD2,GPR33,HEATR5A,HECTD1,STRN3"
TCGA.AG.3909.01A	14	31358774	35786422	223	0.2212	NEUTRAL	NA	22	"AKAP6,AP4S1,ARHGAP5,BAZ1A,CFL2,COCH,DTD2,EAPP,EGLN3,FAM177A1,GPR33,HEATR5A,HECTD1,KIAA0391,NPAS3,NUBPL,PPP2R3C,PSMA6,SNX6,SPTSSA,SRP54,STRN3"
TCGA.CK.5914.01A	14	31374574	34998517	141	0.108	NEUTRAL	NA	13	"AKAP6,AP4S1,ARHGAP5,DTD2,EAPP,EGLN3,GPR33,HEATR5A,HECTD1,NPAS3,NUBPL,SPTSSA,STRN3"
TCGA.AZ.4684.01A	14	31380199	32319268	96	-0.1301	NEUTRAL	NA	7	"AP4S1,DTD2,GPR33,HEATR5A,HECTD1,NUBPL,STRN3"
TCGA.AG.3906.01A	14	31416269	34204372	111	0.1305	NEUTRAL	NA	10	"AKAP6,AP4S1,ARHGAP5,DTD2,GPR33,HEATR5A,HECTD1,NPAS3,NUBPL,STRN3"
TCGA.AA.A00A.01A	14	31549716	31642340	5	-0.2175	NEUTRAL	NA	2	"AP4S1,HECTD1"
TCGA.AG.A00C.01A	14	31917328	32034140	4	0.0604	NEUTRAL	NA	3	"DTD2,GPR33,NUBPL"
TCGA.AA.3982	14	31997912	32337996	79	-0.0281	NEUTRAL	NA	1	NUBPL
TCGA.AA.A010.01A	14	32328255	34931265	40	-0.4189	NEUTRAL	NA	6	"AKAP6,ARHGAP5,EGLN3,NPAS3,NUBPL,SPTSSA"
TCGA.AA.3982	14	32344076	33045393	279	-0.0356	NEUTRAL	NA	2	"AKAP6,ARHGAP5"
TCGA.AA.3811	14	32347352	32826729	191	-0.0539	NEUTRAL	NA	2	"AKAP6,ARHGAP5"
TCGA.AA.3850	14	32361610	32536430	86	0.15165	NEUTRAL	NA	0	None
TCGA.AA.3986	14	32416704	67193022	10894	-0.0081	NEUTRAL	NA	160	Too-Many
TCGA.AA.3850	14	32553017	34235696	867	-0.39715	NEUTRAL	NA	3	"AKAP6,ARHGAP5,NPAS3"
TCGA.AZ.4684.01A	14	32586304	33004712	7	-0.2329	NEUTRAL	NA	2	"AKAP6,ARHGAP5"
TCGA.AF.6672	14	32667288	107285436	23615	0.2733	NEUTRAL	NA	430	Too-Many
TCGA.AA.3811	14	32831039	34232422	766	-0.4145	NEUTRAL	NA	2	"AKAP6,NPAS3"
TCGA.AA.3941	14	32863518	33041490	70	0.1458	NEUTRAL	NA	1	AKAP6
TCGA.AA.3941	14	33041820	33217829	77	-0.3294	NEUTRAL	NA	1	AKAP6
TCGA.AA.3844	14	33045393	33205500	67	-0.5129	NEUTRAL	NA	1	AKAP6
TCGA.CM.6172	14	33173383	107285436	23441	-0.0123	NEUTRAL	NA	430	Too-Many
TCGA.AZ.4684.01A	14	33204837	34904355	21	0.0594	NEUTRAL	NA	4	"AKAP6,EGLN3,NPAS3,SPTSSA"
TCGA.AA.3844	14	33205783	33623517	197	-0.151	NEUTRAL	NA	2	"AKAP6,NPAS3"
TCGA.AA.3982	14	33225985	33623517	193	-0.0251	NEUTRAL	NA	2	"AKAP6,NPAS3"
TCGA.DM.A1DB	14	33237373	41081449	2599	0.0165	NEUTRAL	NA	34	"AKAP6,BAZ1A,BRMS1L,CFL2,CLEC14A,CTAGE5,EAPP,EGLN3,FAM177A1,FBXO33,FOXA1,GEMIN2,INSM2,KIAA0391,MBIP,MIA2,MIPOL1,NFKBIA,NKX2-1,NKX2-8,NPAS3,PAX9,PNN,PPP2R3C,PSMA6,RALGAPA1,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,TRAPPC6B"
TCGA.AD.6901	14	33297554	107285436	23320	-0.3004	NEUTRAL	NA	430	Too-Many
TCGA.F5.6465	14	33455084	33525950	37	-0.4379	NEUTRAL	NA	1	NPAS3
TCGA.F5.6465	14	33526473	42355770	2846	0.0155	NEUTRAL	NA	34	"BAZ1A,BRMS1L,CFL2,CLEC14A,CTAGE5,EAPP,EGLN3,FAM177A1,FBXO33,FOXA1,GEMIN2,INSM2,KIAA0391,LRFN5,MBIP,MIA2,MIPOL1,NFKBIA,NKX2-1,NKX2-8,NPAS3,PAX9,PNN,PPP2R3C,PSMA6,RALGAPA1,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,TRAPPC6B"
TCGA.EI.6512	14	33538668	67791251	10509	0.2215	NEUTRAL	NA	160	Too-Many
TCGA.AA.3941	14	33571229	33907268	223	-0.3618	NEUTRAL	NA	1	NPAS3
TCGA.DM.A1D8	14	33617211	107285436	23208	-0.0026	NEUTRAL	NA	429	Too-Many
TCGA.AA.3982	14	33625684	34239295	415	-0.3328	NEUTRAL	NA	1	NPAS3
TCGA.AA.3844	14	33625684	37489007	1472	-0.1363	NEUTRAL	NA	22	"BAZ1A,BRMS1L,CFL2,EAPP,EGLN3,FAM177A1,INSM2,KIAA0391,MBIP,NFKBIA,NKX2-1,NKX2-8,NPAS3,PAX9,PPP2R3C,PSMA6,RALGAPA1,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54"
TCGA.D5.7000	14	33827378	107285436	23002	-0.0014	NEUTRAL	NA	429	Too-Many
TCGA.AA.3941	14	33934914	33970529	24	0.1936	NEUTRAL	NA	1	NPAS3
TCGA.AA.3941	14	34012841	34247093	137	0.1054	NEUTRAL	NA	1	NPAS3
TCGA.AA.3556	14	34025229	105088608	22708	-0.1576	NEUTRAL	NA	407	Too-Many
TCGA.AG.A01W.01A	14	34144534	34646210	58	-0.1147	NEUTRAL	NA	2	"EGLN3,NPAS3"
TCGA.A6.6649	14	34199637	34202266	3	-0.1686	NEUTRAL	NA	1	NPAS3
TCGA.AA.3811	14	34232710	36574068	630	-0.0316	NEUTRAL	NA	16	"BAZ1A,BRMS1L,CFL2,EAPP,EGLN3,FAM177A1,INSM2,KIAA0391,NFKBIA,NPAS3,PPP2R3C,PSMA6,RALGAPA1,SNX6,SPTSSA,SRP54"
TCGA.AA.3850	14	34239295	34919348	282	0.19535	NEUTRAL	NA	3	"EGLN3,NPAS3,SPTSSA"
TCGA.AA.3982	14	34241222	36487407	584	0.1754	NEUTRAL	NA	16	"BAZ1A,BRMS1L,CFL2,EAPP,EGLN3,FAM177A1,INSM2,KIAA0391,NFKBIA,NPAS3,PPP2R3C,PSMA6,RALGAPA1,SNX6,SPTSSA,SRP54"
TCGA.AG.3906.01A	14	34396114	34419610	4	-0.0836	NEUTRAL	NA	1	EGLN3
TCGA.AG.3882	14	34451955	38930053	1338	0.2637	NEUTRAL	NA	24	"BAZ1A,BRMS1L,CFL2,CLEC14A,EAPP,FAM177A1,FOXA1,INSM2,KIAA0391,MBIP,MIPOL1,NFKBIA,NKX2-1,NKX2-8,PAX9,PPP2R3C,PSMA6,RALGAPA1,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1"
TCGA.AG.3591	14	34516579	43061435	2426	-0.1493	NEUTRAL	NA	32	"BAZ1A,BRMS1L,CFL2,CLEC14A,CTAGE5,EAPP,FAM177A1,FBXO33,FOXA1,GEMIN2,INSM2,KIAA0391,LRFN5,MBIP,MIA2,MIPOL1,NFKBIA,NKX2-1,NKX2-8,PAX9,PNN,PPP2R3C,PSMA6,RALGAPA1,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,TRAPPC6B"
TCGA.AG.A01W.01A	14	34719601	38625828	148	0.2063	NEUTRAL	NA	22	"BAZ1A,BRMS1L,CFL2,EAPP,FAM177A1,FOXA1,INSM2,KIAA0391,MBIP,MIPOL1,NFKBIA,NKX2-1,NKX2-8,PAX9,PPP2R3C,PSMA6,RALGAPA1,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54"
TCGA.A6.6653	14	34890702	35063315	23	-0.4265	NEUTRAL	NA	3	"EAPP,SNX6,SPTSSA"
TCGA.AZ.4684.01A	14	34931265	35786422	91	-0.3678	NEUTRAL	NA	10	"BAZ1A,CFL2,EAPP,FAM177A1,KIAA0391,PPP2R3C,PSMA6,SNX6,SPTSSA,SRP54"
TCGA.AG.3891.01A	14	34985528	35032272	7	-0.1882	NEUTRAL	NA	2	"EAPP,SNX6"
TCGA.CK.4948.01B	14	34985528	35072511	14	-0.3842	NEUTRAL	NA	2	"EAPP,SNX6"
TCGA.AA.A010.01A	14	34985528	35482991	53	0.3162	NEUTRAL	NA	5	"BAZ1A,CFL2,EAPP,SNX6,SRP54"
TCGA.AG.A00C.01A	14	34998517	35036865	6	0.0747	NEUTRAL	NA	2	"EAPP,SNX6"
TCGA.AA.3509.01A	14	34998517	35786422	88	-0.4834	NEUTRAL	NA	9	"BAZ1A,CFL2,EAPP,FAM177A1,KIAA0391,PPP2R3C,PSMA6,SNX6,SRP54"
TCGA.AG.3891.01A	14	35036865	35066702	6	0.3231	NEUTRAL	NA	1	SNX6
TCGA.A6.6653	14	35063467	73011884	11557	0.0026	NEUTRAL	NA	193	Too-Many
TCGA.AG.3891.01A	14	35072511	35871553	77	-0.1765	NEUTRAL	NA	9	"BAZ1A,CFL2,FAM177A1,KIAA0391,NFKBIA,PPP2R3C,PSMA6,SNX6,SRP54"
TCGA.A6.3810.01A	14	35074780	50044452	389	-0.2655	NEUTRAL	NA	41	"BAZ1A,BRMS1L,C14orf28,CFL2,CLEC14A,CTAGE5,FAM177A1,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FSCB,GEMIN2,INSM2,KIAA0391,KLHL28,LRFN5,MBIP,MDGA2,MIA2,MIPOL1,MIS18BP1,NFKBIA,NKX2-1,NKX2-8,PAX9,PNN,PPP2R3C,PRPF39,PSMA6,RALGAPA1,RPL10L,RPS29,SEC23A,SFTA3,SLC25A21,SNX6,SRP54,SSTR1,TRAPPC6B"
TCGA.CK.4948.01B	14	35074780	56101197	938	-0.0248	NEUTRAL	NA	93	"ABHD12B,ARF6,ATG14,ATL1,ATP5S,BAZ1A,BMP4,BRMS1L,C14orf166,C14orf28,CDKL1,CDKN3,CFL2,CGRRF1,CLEC14A,CNIH1,CTAGE5,DDHD1,DLGAP5,DNAAF2,ERO1L,FAM177A1,FAM179B,FANCM,FBXO33,FBXO34,FERMT2,FKBP3,FOXA1,FRMD6,FSCB,GCH1,GEMIN2,GMFB,GNG2,GNPNAT1,GPR137C,INSM2,KIAA0391,KLHDC1,KLHDC2,KLHL28,KTN1,L2HGDH,LGALS3,LRFN5,LRR1,MAP4K5,MAPK1IP1L,MBIP,MDGA2,MGAT2,MIA2,MIPOL1,MIS18BP1,NEMF,NFKBIA,NID2,NIN,NKX2-1,NKX2-8,PAX9,PNN,POLE2,PPP2R3C,PRPF39,PSMA6,PSMC6,PTGDR,PTGER2,PYGL,RALGAPA1,RPL10L,RPL36AL,RPS29,SAMD4A,SAV1,SEC23A,SFTA3,SLC25A21,SNX6,SOCS4,SOS2,SRP54,SSTR1,STYX,TBPL2,TMX1,TRAPPC6B,TRIM9,TXNDC16,VCPKMT,WDHD1"
TCGA.AG.3906.01A	14	35078807	39736594	231	0.0745	NEUTRAL	NA	28	"BAZ1A,BRMS1L,CFL2,CLEC14A,CTAGE5,FAM177A1,FOXA1,GEMIN2,INSM2,KIAA0391,MBIP,MIA2,MIPOL1,NFKBIA,NKX2-1,NKX2-8,PAX9,PNN,PPP2R3C,PSMA6,RALGAPA1,SEC23A,SFTA3,SLC25A21,SNX6,SRP54,SSTR1,TRAPPC6B"
TCGA.AG.3594	14	35135124	95089866	18893	0.0108	NEUTRAL	NA	336	Too-Many
TCGA.AA.3930.01A	14	35182064	36339554	131	0.0976	NEUTRAL	NA	11	"BAZ1A,BRMS1L,CFL2,FAM177A1,INSM2,KIAA0391,NFKBIA,PPP2R3C,PSMA6,RALGAPA1,SRP54"
TCGA.AA.A00N.01A	14	35183645	35254956	14	0.3626	NEUTRAL	NA	2	"BAZ1A,CFL2"
TCGA.AA.A00N.01A	14	35261932	35596658	45	-0.1459	NEUTRAL	NA	5	"BAZ1A,FAM177A1,KIAA0391,PPP2R3C,SRP54"
TCGA.AA.A00L.01A	14	35465868	35786422	45	0.1452	NEUTRAL	NA	5	"FAM177A1,KIAA0391,PPP2R3C,PSMA6,SRP54"
TCGA.AA.A00A.01A	14	35578978	36225991	60	0.3418	NEUTRAL	NA	6	"INSM2,KIAA0391,NFKBIA,PPP2R3C,PSMA6,RALGAPA1"
TCGA.AA.3850	14	35604349	35630561	7	-0.40085	NEUTRAL	NA	1	KIAA0391
TCGA.CK.5914.01A	14	35649826	35786422	11	0.3077	NEUTRAL	NA	2	"KIAA0391,PSMA6"
TCGA.AA.A02H.01A	14	35777161	36197561	41	-0.1299	NEUTRAL	NA	4	"INSM2,NFKBIA,PSMA6,RALGAPA1"
TCGA.AA.A010.01A	14	35777161	36989215	80	0.0289	NEUTRAL	NA	8	"BRMS1L,INSM2,MBIP,NFKBIA,NKX2-1,PSMA6,RALGAPA1,SFTA3"
TCGA.AA.3875	14	35844944	35925522	25	0.2334	NEUTRAL	NA	1	NFKBIA
TCGA.CK.5914.01A	14	35871196	36142064	26	-0.3781	NEUTRAL	NA	3	"INSM2,NFKBIA,RALGAPA1"
TCGA.AG.A011.01A	14	35872844	36124971	17	0.3463	NEUTRAL	NA	3	"INSM2,NFKBIA,RALGAPA1"
TCGA.AA.3875	14	35928835	93403865	18120	-0.184	NEUTRAL	NA	302	Too-Many
TCGA.AA.3850	14	35973453	40133699	1218	-0.22615	NEUTRAL	NA	20	"BRMS1L,CLEC14A,CTAGE5,FBXO33,FOXA1,GEMIN2,INSM2,MBIP,MIA2,MIPOL1,NKX2-1,NKX2-8,PAX9,PNN,RALGAPA1,SEC23A,SFTA3,SLC25A21,SSTR1,TRAPPC6B"
TCGA.AA.3956	14	35998385	37489007	571	-0.0045	NEUTRAL	NA	9	"BRMS1L,INSM2,MBIP,NKX2-1,NKX2-8,PAX9,RALGAPA1,SFTA3,SLC25A21"
TCGA.AA.A00L.01A	14	36008696	36339554	51	-0.0796	NEUTRAL	NA	2	"BRMS1L,RALGAPA1"
TCGA.AG.3909.01A	14	36039772	39721974	153	0.117	NEUTRAL	NA	17	"BRMS1L,CLEC14A,FOXA1,GEMIN2,MBIP,MIA2,MIPOL1,NKX2-1,NKX2-8,PAX9,PNN,RALGAPA1,SEC23A,SFTA3,SLC25A21,SSTR1,TRAPPC6B"
TCGA.AG.A011.01A	14	36128295	91744224	2751	0.0532	NEUTRAL	NA	287	Too-Many
TCGA.A6.3808.01A	14	36190877	47770584	275	0.0997	NEUTRAL	NA	30	"BRMS1L,C14orf28,CLEC14A,CTAGE5,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FSCB,GEMIN2,KLHL28,LRFN5,MBIP,MDGA2,MIA2,MIPOL1,MIS18BP1,NKX2-1,NKX2-8,PAX9,PNN,PRPF39,RALGAPA1,RPL10L,SEC23A,SFTA3,SLC25A21,SSTR1,TRAPPC6B"
TCGA.AA.3862.01A	14	36190877	58897299	984	-0.2607	NEUTRAL	NA	98	"ABHD12B,ACTR10,AP5M1,ARF6,ARID4A,ATG14,ATL1,ATP5S,BMP4,BRMS1L,C14orf105,C14orf166,C14orf28,C14orf37,CDKL1,CDKN3,CGRRF1,CLEC14A,CNIH1,CTAGE5,DDHD1,DLGAP5,DNAAF2,ERO1L,EXOC5,FAM179B,FANCM,FBXO33,FBXO34,FERMT2,FKBP3,FOXA1,FRMD6,FSCB,GCH1,GEMIN2,GMFB,GNG2,GNPNAT1,GPR137C,KIAA0586,KLHDC1,KLHDC2,KLHL28,KTN1,L2HGDH,LGALS3,LRFN5,LRR1,MAP4K5,MAPK1IP1L,MBIP,MDGA2,MGAT2,MIA2,MIPOL1,MIS18BP1,NAA30,NEMF,NID2,NIN,NKX2-1,NKX2-8,OTX2,PAX9,PELI2,PNN,POLE2,PRPF39,PSMA3,PSMC6,PTGDR,PTGER2,PYGL,RALGAPA1,RPL10L,RPL36AL,RPS29,SAMD4A,SAV1,SEC23A,SFTA3,SLC25A21,SLC35F4,SOCS4,SOS2,SSTR1,STYX,TBPL2,TIMM9,TMEM260,TMX1,TOMM20L,TRAPPC6B,TRIM9,TXNDC16,VCPKMT,WDHD1"
TCGA.AA.3712	14	36242165	107285436	22302	-0.394	NEUTRAL	NA	415	Too-Many
TCGA.AA.A02H.01A	14	36244794	39532472	69	-0.171	NEUTRAL	NA	13	"BRMS1L,CLEC14A,FOXA1,MBIP,MIPOL1,NKX2-1,NKX2-8,PAX9,RALGAPA1,SEC23A,SFTA3,SLC25A21,SSTR1"
TCGA.AA.3941	14	36428278	36487407	45	0.3104	NEUTRAL	NA	0	None
TCGA.AA.3982	14	36488300	37489007	473	-0.1314	NEUTRAL	NA	6	"MBIP,NKX2-1,NKX2-8,PAX9,SFTA3,SLC25A21"
TCGA.AA.3941	14	36582419	36673255	27	-0.0656	NEUTRAL	NA	0	None
TCGA.AA.3811	14	36705393	37490516	387	-0.2183	NEUTRAL	NA	6	"MBIP,NKX2-1,NKX2-8,PAX9,SFTA3,SLC25A21"
TCGA.CK.5914.01A	14	36768241	36946127	10	0.0822	NEUTRAL	NA	2	"MBIP,SFTA3"
TCGA.AA.3930.01A	14	36768241	39534061	71	-0.2263	NEUTRAL	NA	11	"CLEC14A,FOXA1,MBIP,MIPOL1,NKX2-1,NKX2-8,PAX9,SEC23A,SFTA3,SLC25A21,SSTR1"
TCGA.AA.A00A.01A	14	36780738	37145354	13	-0.0742	NEUTRAL	NA	5	"MBIP,NKX2-1,NKX2-8,PAX9,SFTA3"
TCGA.AA.3941	14	36802008	36814263	3	-0.4498	NEUTRAL	NA	0	None
TCGA.AA.3941	14	36816367	37375206	300	0.3572	NEUTRAL	NA	5	"NKX2-1,NKX2-8,PAX9,SFTA3,SLC25A21"
TCGA.CK.5914.01A	14	36989215	38311353	42	0.1963	NEUTRAL	NA	6	"FOXA1,MIPOL1,NKX2-1,NKX2-8,PAX9,SLC25A21"
TCGA.AA.A010.01A	14	37145354	38016042	22	-0.1044	NEUTRAL	NA	3	"MIPOL1,PAX9,SLC25A21"
TCGA.AA.A00L.01A	14	37149794	38311353	35	-0.2705	NEUTRAL	NA	3	"FOXA1,MIPOL1,SLC25A21"
TCGA.F4.6856	14	37183613	37258703	52	-0.4709	NEUTRAL	NA	1	SLC25A21
TCGA.F4.6856	14	37261410	107285436	21841	-0.0042	NEUTRAL	NA	408	Too-Many
TCGA.AA.3941	14	37378444	37409394	14	-0.3953	NEUTRAL	NA	1	SLC25A21
TCGA.AA.3941	14	37413523	37477842	37	0.2654	NEUTRAL	NA	1	SLC25A21
TCGA.AA.3941	14	37490927	39472900	501	0.0085	NEUTRAL	NA	5	"CLEC14A,FOXA1,MIPOL1,SLC25A21,SSTR1"
TCGA.AA.3956	14	37490927	85772935	14947	-0.0084	NEUTRAL	NA	259	Too-Many
TCGA.AA.3982	14	37494898	38846948	332	-0.2341	NEUTRAL	NA	5	"CLEC14A,FOXA1,MIPOL1,SLC25A21,SSTR1"
TCGA.AA.3811	14	37494898	38987228	364	-0.4216	NEUTRAL	NA	5	"CLEC14A,FOXA1,MIPOL1,SLC25A21,SSTR1"
TCGA.AA.3844	14	37494898	38987228	364	-0.3473	NEUTRAL	NA	5	"CLEC14A,FOXA1,MIPOL1,SLC25A21,SSTR1"
TCGA.F5.6864	14	37594371	37868529	48	-0.0176	NEUTRAL	NA	2	"MIPOL1,SLC25A21"
TCGA.F5.6864	14	37874649	61790993	7135	0.3496	NEUTRAL	NA	109	Too-Many
TCGA.AA.3560	14	37894401	107285436	21653	-0.0164	NEUTRAL	NA	407	Too-Many
TCGA.AA.A00N.01A	14	38016042	38265945	6	-0.2583	NEUTRAL	NA	2	"FOXA1,MIPOL1"
TCGA.AA.A010.01A	14	38265449	39736594	65	0.2748	NEUTRAL	NA	8	"CLEC14A,CTAGE5,GEMIN2,MIA2,PNN,SEC23A,SSTR1,TRAPPC6B"
TCGA.AG.A01W.01A	14	38630396	38714204	21	-0.3717	NEUTRAL	NA	1	SSTR1
TCGA.CK.5914.01A	14	38678556	39769140	61	-0.3834	NEUTRAL	NA	8	"CLEC14A,CTAGE5,GEMIN2,MIA2,PNN,SEC23A,SSTR1,TRAPPC6B"
TCGA.AG.A01W.01A	14	38773040	44675055	90	0.2337	NEUTRAL	NA	8	"CTAGE5,FBXO33,GEMIN2,LRFN5,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AA.3982	14	38861499	38987228	28	-0.4202	NEUTRAL	NA	0	None
TCGA.AG.3882	14	38940507	47708285	2229	-0.32	NEUTRAL	NA	18	"C14orf28,CTAGE5,FAM179B,FANCM,FBXO33,FKBP3,FSCB,GEMIN2,KLHL28,LRFN5,MDGA2,MIA2,MIS18BP1,PNN,PRPF39,RPL10L,SEC23A,TRAPPC6B"
TCGA.AA.3982	14	38998523	39432505	120	-0.3286	NEUTRAL	NA	0	None
TCGA.AA.3844	14	38998523	40139007	275	-0.1815	NEUTRAL	NA	7	"CTAGE5,FBXO33,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AA.3811	14	39228630	40133548	215	-0.1161	NEUTRAL	NA	7	"CTAGE5,FBXO33,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.DY.A1DF	14	39263055	107285436	21311	-0.0638	NEUTRAL	NA	403	Too-Many
TCGA.AA.3982	14	39438910	39912161	102	0.2154	NEUTRAL	NA	7	"CTAGE5,FBXO33,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AA.A00L.01A	14	39502390	39816860	68	0.0029	NEUTRAL	NA	6	"CTAGE5,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AG.3891.01A	14	39502390	56746377	751	-0.4239	NEUTRAL	NA	72	"ABHD12B,ARF6,ATG14,ATL1,ATP5S,BMP4,C14orf166,C14orf28,CDKL1,CDKN3,CGRRF1,CNIH1,CTAGE5,DDHD1,DLGAP5,DNAAF2,ERO1L,FAM179B,FANCM,FBXO33,FBXO34,FERMT2,FKBP3,FRMD6,FSCB,GCH1,GEMIN2,GMFB,GNG2,GNPNAT1,GPR137C,KLHDC1,KLHDC2,KLHL28,KTN1,L2HGDH,LGALS3,LRFN5,LRR1,MAP4K5,MAPK1IP1L,MDGA2,MGAT2,MIA2,MIS18BP1,NEMF,NID2,NIN,PELI2,PNN,POLE2,PRPF39,PSMC6,PTGDR,PTGER2,PYGL,RPL10L,RPL36AL,RPS29,SAMD4A,SAV1,SEC23A,SOCS4,SOS2,STYX,TBPL2,TMX1,TRAPPC6B,TRIM9,TXNDC16,VCPKMT,WDHD1"
TCGA.AA.3509.01A	14	39532472	39709732	36	-0.4436	NEUTRAL	NA	5	"GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AZ.4684.01A	14	39534061	39748460	42	-0.3285	NEUTRAL	NA	6	"CTAGE5,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AA.3930.01A	14	39536330	39703272	32	0.2664	NEUTRAL	NA	5	"GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AG.4009.01A	14	39556086	39736594	35	-0.2952	NEUTRAL	NA	6	"CTAGE5,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AG.A00C.01A	14	39556086	39764077	41	-0.2466	NEUTRAL	NA	6	"CTAGE5,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AA.3967.01A	14	39560644	39748460	36	-0.0278	NEUTRAL	NA	6	"CTAGE5,GEMIN2,MIA2,PNN,SEC23A,TRAPPC6B"
TCGA.AA.A00N.01A	14	39583479	39717095	27	-0.094	NEUTRAL	NA	4	"GEMIN2,MIA2,PNN,TRAPPC6B"
TCGA.AA.A02H.01A	14	39703272	45657978	113	-0.1753	NEUTRAL	NA	11	"C14orf28,CTAGE5,FAM179B,FANCM,FBXO33,FKBP3,FSCB,KLHL28,LRFN5,MIA2,PRPF39"
TCGA.AA.3930.01A	14	39706079	39796091	25	-0.1622	NEUTRAL	NA	2	"CTAGE5,MIA2"
TCGA.AA.3509.01A	14	39716149	45581519	80	0.2143	NEUTRAL	NA	9	"C14orf28,CTAGE5,FAM179B,FBXO33,FSCB,KLHL28,LRFN5,MIA2,PRPF39"
TCGA.AZ.4684.01A	14	39760162	45581519	73	0.3172	NEUTRAL	NA	8	"C14orf28,CTAGE5,FAM179B,FBXO33,FSCB,KLHL28,LRFN5,PRPF39"
TCGA.AA.3967.01A	14	39760162	66083762	1266	-0.3494	NEUTRAL	NA	126	Too-Many
TCGA.AG.3909.01A	14	39769140	44976386	29	0.1617	NEUTRAL	NA	4	"CTAGE5,FBXO33,FSCB,LRFN5"
TCGA.CK.5914.01A	14	39771291	39784803	7	0.0837	NEUTRAL	NA	1	CTAGE5
TCGA.AG.3906.01A	14	39772617	58605466	759	0.0097	NEUTRAL	NA	75	"ABHD12B,AP5M1,ARF6,ATG14,ATL1,ATP5S,BMP4,C14orf105,C14orf166,C14orf28,C14orf37,CDKL1,CDKN3,CGRRF1,CNIH1,CTAGE5,DDHD1,DLGAP5,DNAAF2,ERO1L,EXOC5,FAM179B,FANCM,FBXO33,FBXO34,FERMT2,FKBP3,FRMD6,FSCB,GCH1,GMFB,GNG2,GNPNAT1,GPR137C,KLHDC1,KLHDC2,KLHL28,KTN1,L2HGDH,LGALS3,LRFN5,LRR1,MAP4K5,MAPK1IP1L,MDGA2,MGAT2,MIS18BP1,NAA30,NEMF,NID2,NIN,OTX2,PELI2,POLE2,PRPF39,PSMC6,PTGDR,PTGER2,PYGL,RPL10L,RPL36AL,RPS29,SAMD4A,SAV1,SLC35F4,SOCS4,SOS2,STYX,TBPL2,TMEM260,TMX1,TRIM9,TXNDC16,VCPKMT,WDHD1"
TCGA.AA.A010.01A	14	39784803	45515729	47	0.2272	NEUTRAL	NA	7	"C14orf28,CTAGE5,FAM179B,FBXO33,FSCB,KLHL28,LRFN5"
TCGA.CK.5914.01A	14	39868672	44976386	13	-0.1576	NEUTRAL	NA	3	"FBXO33,FSCB,LRFN5"
TCGA.NH.A6GC	14	39871016	39983127	26	-0.0341	NEUTRAL	NA	1	FBXO33
TCGA.AA.3930.01A	14	39900779	44974375	9	-0.4576	NEUTRAL	NA	3	"FBXO33,FSCB,LRFN5"
TCGA.AA.3941	14	39915779	40133548	48	0.2196	NEUTRAL	NA	0	None
TCGA.AA.3982	14	39915779	40133548	48	-0.2208	NEUTRAL	NA	0	None
TCGA.NH.A6GC	14	40007183	54624541	4267	0.3317	NEUTRAL	NA	49	"ABHD12B,ARF6,ATL1,ATP5S,BMP4,C14orf166,C14orf28,CDKL1,DDHD1,DNAAF2,ERO1L,FAM179B,FANCM,FERMT2,FKBP3,FRMD6,FSCB,GNG2,GNPNAT1,GPR137C,KLHDC1,KLHDC2,KLHL28,L2HGDH,LRFN5,LRR1,MAP4K5,MDGA2,MGAT2,MIS18BP1,NEMF,NID2,NIN,POLE2,PRPF39,PSMC6,PTGDR,PTGER2,PYGL,RPL10L,RPL36AL,RPS29,SAV1,SOS2,STYX,TMX1,TRIM9,TXNDC16,VCPKMT"
TCGA.AA.3941	14	40133699	47417587	1856	-0.4381	NEUTRAL	NA	11	"C14orf28,FAM179B,FANCM,FKBP3,FSCB,KLHL28,LRFN5,MDGA2,MIS18BP1,PRPF39,RPL10L"
TCGA.DM.A28F	14	40208974	40347549	46	-0.5059	NEUTRAL	NA	0	None
TCGA.DM.A28F	14	40348045	45673578	1396	0.0106	NEUTRAL	NA	9	"C14orf28,FAM179B,FANCM,FKBP3,FSCB,KLHL28,LRFN5,MIS18BP1,PRPF39"
TCGA.AA.3524	14	41265597	107285436	20744	-0.0295	NEUTRAL	NA	396	Too-Many
TCGA.AG.3726	14	41472097	57627269	5018	-0.0094	NEUTRAL	NA	67	"ABHD12B,ARF6,ATG14,ATL1,ATP5S,BMP4,C14orf166,C14orf28,CDKL1,CDKN3,CGRRF1,CNIH1,DDHD1,DLGAP5,DNAAF2,ERO1L,FAM179B,FANCM,FBXO34,FERMT2,FKBP3,FRMD6,FSCB,GCH1,GMFB,GNG2,GNPNAT1,GPR137C,KLHDC1,KLHDC2,KLHL28,KTN1,L2HGDH,LGALS3,LRFN5,LRR1,MAP4K5,MAPK1IP1L,MDGA2,MGAT2,MIS18BP1,NEMF,NID2,NIN,OTX2,PELI2,POLE2,PRPF39,PSMC6,PTGDR,PTGER2,PYGL,RPL10L,RPL36AL,RPS29,SAMD4A,SAV1,SOCS4,SOS2,STYX,TBPL2,TMEM260,TMX1,TRIM9,TXNDC16,VCPKMT,WDHD1"
TCGA.A6.6137	14	41653976	107285436	20652	0.001	NEUTRAL	NA	396	Too-Many
TCGA.AA.3841	14	41670101	48243040	1647	-0.4956	NEUTRAL	NA	11	"C14orf28,FAM179B,FANCM,FKBP3,FSCB,KLHL28,LRFN5,MDGA2,MIS18BP1,PRPF39,RPL10L"
TCGA.A6.6648	14	41670101	69242845	8405	0.1336	NEUTRAL	NA	139	Too-Many
TCGA.F4.6704	14	41670101	107285436	20616	0.1673	NEUTRAL	NA	396	Too-Many
TCGA.DM.A1DB	14	42252672	107285436	20496	0.0053	NEUTRAL	NA	396	Too-Many
TCGA.F5.6465	14	42363126	42791902	99	-0.4657	NEUTRAL	NA	1	LRFN5
TCGA.F5.6465	14	42822115	43422907	181	0.0303	NEUTRAL	NA	0	None
TCGA.AG.3591	14	43083556	107285436	20265	-0.1909	NEUTRAL	NA	395	Too-Many
TCGA.F5.6465	14	43430441	43551197	33	-0.4859	NEUTRAL	NA	0	None
TCGA.F5.6465	14	43560106	51803505	2148	0.0264	NEUTRAL	NA	33	"ABHD12B,ARF6,ATL1,ATP5S,C14orf28,CDKL1,DNAAF2,FAM179B,FANCM,FKBP3,FSCB,KLHDC1,KLHDC2,KLHL28,L2HGDH,LRR1,MAP4K5,MDGA2,MGAT2,MIS18BP1,NEMF,NIN,POLE2,PRPF39,PYGL,RPL10L,RPL36AL,RPS29,SAV1,SOS2,TMX1,TRIM9,VCPKMT"
TCGA.AA.3529	14	43949918	44220722	47	-0.4936	NEUTRAL	NA	0	None
TCGA.AA.3529	14	44223957	67379014	7173	-0.0081	NEUTRAL	NA	124	Too-Many
TCGA.AG.A01W.01A	14	44675975	44692827	5	-0.4868	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	44693614	44757266	25	0.2229	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	44762862	44771649	6	-0.4762	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	44774720	55203668	564	0.0853	NEUTRAL	NA	53	"ABHD12B,ARF6,ATL1,ATP5S,BMP4,C14orf166,C14orf28,CDKL1,CDKN3,CGRRF1,CNIH1,DDHD1,DNAAF2,ERO1L,FAM179B,FANCM,FERMT2,FKBP3,FRMD6,FSCB,GMFB,GNG2,GNPNAT1,GPR137C,KLHDC1,KLHDC2,KLHL28,L2HGDH,LRR1,MAP4K5,MDGA2,MGAT2,MIS18BP1,NEMF,NID2,NIN,POLE2,PRPF39,PSMC6,PTGDR,PTGER2,PYGL,RPL10L,RPL36AL,RPS29,SAMD4A,SAV1,SOS2,STYX,TMX1,TRIM9,TXNDC16,VCPKMT"
TCGA.AA.3930.01A	14	44976386	45374519	5	0.0193	NEUTRAL	NA	2	"C14orf28,FSCB"
TCGA.AG.A00C.01A	14	44976386	45374519	5	-0.1051	NEUTRAL	NA	2	"C14orf28,FSCB"
TCGA.DC.4749	14	45207564	107285436	19702	-0.4974	NEUTRAL	NA	394	Too-Many
TCGA.AA.3930.01A	14	45398201	45478109	13	-0.4086	NEUTRAL	NA	2	"FAM179B,KLHL28"
TCGA.AG.3909.01A	14	45398201	45521587	20	0.3239	NEUTRAL	NA	2	"FAM179B,KLHL28"
TCGA.CK.5914.01A	14	45398201	47324190	90	-0.1437	NEUTRAL	NA	8	"FAM179B,FANCM,FKBP3,KLHL28,MDGA2,MIS18BP1,PRPF39,RPL10L"
TCGA.AA.A00L.01A	14	45464900	62229128	818	-0.2288	NEUTRAL	NA	96	"ABHD12B,ACTR10,AP5M1,ARF6,ARID4A,ATG14,ATL1,ATP5S,BMP4,C14orf105,C14orf166,C14orf37,C14orf39,CCDC175,CDKL1,CDKN3,CGRRF1,CNIH1,DAAM1,DACT1,DDHD1,DHRS7,DLGAP5,DNAAF2,ERO1L,EXOC5,FAM179B,FANCM,FBXO34,FERMT2,FKBP3,FRMD6,GCH1,GMFB,GNG2,GNPNAT1,GPR135,GPR137C,HIF1A,JKAMP,KIAA0586,KLHDC1,KLHDC2,KTN1,L2HGDH,L3HYPDH,LGALS3,LRR1,MAP4K5,MAPK1IP1L,MDGA2,MGAT2,MIS18BP1,MNAT1,NAA30,NEMF,NID2,NIN,OTX2,PCNXL4,PELI2,POLE2,PPM1A,PRKCH,PRPF39,PSMA3,PSMC6,PTGDR,PTGER2,PYGL,RPL10L,RPL36AL,RPS29,RTN1,SAMD4A,SAV1,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SOCS4,SOS2,STYX,TBPL2,TIMM9,TMEM260,TMEM30B,TMX1,TOMM20L,TRIM9,TRMT5,TXNDC16,VCPKMT,WDHD1"
TCGA.AA.3930.01A	14	45481130	45701888	68	-0.0298	NEUTRAL	NA	5	"FAM179B,FANCM,FKBP3,MIS18BP1,PRPF39"
TCGA.AG.A00C.01A	14	45497332	45636114	42	-0.4913	NEUTRAL	NA	4	"FAM179B,FANCM,FKBP3,PRPF39"
TCGA.AG.3909.01A	14	45523582	45618013	30	-0.3505	NEUTRAL	NA	4	"FAM179B,FANCM,FKBP3,PRPF39"
TCGA.AG.4009.01A	14	45583372	45715909	46	-0.3413	NEUTRAL	NA	4	"FANCM,FKBP3,MIS18BP1,PRPF39"
TCGA.AA.3509.01A	14	45585329	47314917	48	0.0507	NEUTRAL	NA	5	"FANCM,FKBP3,MDGA2,MIS18BP1,RPL10L"
TCGA.AZ.4684.01A	14	45585329	47314917	48	0.1521	NEUTRAL	NA	5	"FANCM,FKBP3,MDGA2,MIS18BP1,RPL10L"
TCGA.AG.3909.01A	14	45620553	45701888	29	0.3017	NEUTRAL	NA	2	"FANCM,MIS18BP1"
TCGA.AA.A00N.01A	14	45628287	45639755	4	0.1593	NEUTRAL	NA	1	FANCM
TCGA.AA.A00N.01A	14	45693149	45696828	3	0.0554	NEUTRAL	NA	1	MIS18BP1
TCGA.AA.A02H.01A	14	45701888	107282751	3538	-0.3813	NEUTRAL	NA	388	Too-Many
TCGA.AA.3930.01A	14	45704978	50044452	23	-0.3971	NEUTRAL	NA	4	"MDGA2,MIS18BP1,RPL10L,RPS29"
TCGA.DM.A28F	14	45846460	81044613	11329	-0.0164	NEUTRAL	NA	234	Too-Many
TCGA.F4.6459	14	45897410	107285436	19614	-0.03	NEUTRAL	NA	387	Too-Many
TCGA.G4.6320	14	45897410	107285436	19609	-0.0061	NEUTRAL	NA	387	Too-Many
TCGA.F4.6460	14	46361471	107285436	19515	-0.3111	NEUTRAL	NA	387	Too-Many
TCGA.AA.3846	14	46491827	70151932	7481	-0.3826	NEUTRAL	NA	140	Too-Many
TCGA.AA.3866	14	46837138	47410981	151	-0.3209	NEUTRAL	NA	2	"MDGA2,RPL10L"
TCGA.CK.6748	14	46994307	107285436	19324	-0.4258	NEUTRAL	NA	387	Too-Many
TCGA.AA.A00D.01A	14	47120267	47770584	5	-0.1162	NEUTRAL	NA	2	"MDGA2,RPL10L"
TCGA.AG.3909.01A	14	47120267	50065688	19	0.217	NEUTRAL	NA	4	"LRR1,MDGA2,RPL10L,RPS29"
TCGA.CK.5914.01A	14	47389167	47770584	9	-0.0405	NEUTRAL	NA	1	MDGA2
TCGA.CM.4748	14	47395359	107285436	19247	0.0036	NEUTRAL	NA	386	Too-Many
TCGA.AA.3872	14	47421179	107285436	19228	-0.0256	NEUTRAL	NA	386	Too-Many
TCGA.AA.3982	14	47421399	49761382	635	-0.442	NEUTRAL	NA	1	MDGA2
TCGA.AA.3844	14	47421399	49782333	648	-0.4767	NEUTRAL	NA	1	MDGA2
TCGA.AA.3530	14	47421399	86443260	12723	-0.473	NEUTRAL	NA	238	Too-Many
TCGA.AA.3941	14	47423973	49775666	641	-0.2322	NEUTRAL	NA	1	MDGA2
TCGA.AA.3866	14	47423973	71337621	7684	-0.1437	NEUTRAL	NA	151	Too-Many
TCGA.AG.3882	14	47722553	105473902	19028	-0.0474	NEUTRAL	NA	373	Too-Many
TCGA.G4.6317	14	47722553	107285436	19163	0.0354	NEUTRAL	NA	386	Too-Many
TCGA.CK.5914.01A	14	48143667	50065688	6	-0.4521	NEUTRAL	NA	3	"LRR1,MDGA2,RPS29"
TCGA.AA.3509.01A	14	48143667	50895888	163	-0.3368	NEUTRAL	NA	17	"ARF6,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MAP4K5,MDGA2,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SOS2,VCPKMT"
TCGA.AA.3841	14	48286587	107285436	18998	-0.3843	NEUTRAL	NA	385	Too-Many
TCGA.F5.6811.01A	14	49120038	105163176	3950	-0.364	NEUTRAL	NA	364	Too-Many
TCGA.AA.3982	14	49762002	51835120	649	0.1385	NEUTRAL	NA	23	"ABHD12B,ARF6,ATL1,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MAP4K5,MGAT2,NEMF,NIN,POLE2,PYGL,RPL36AL,RPS29,SAV1,SOS2,TMX1,TRIM9,VCPKMT"
TCGA.AA.3941	14	49776561	50016187	103	0.3663	NEUTRAL	NA	0	None
TCGA.AA.3850	14	49782067	49957270	83	0.00345	NEUTRAL	NA	0	None
TCGA.AA.3844	14	49783781	50881953	321	0.0921	NEUTRAL	NA	15	"ARF6,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SOS2,VCPKMT"
TCGA.AA.3811	14	49821857	78774134	9492	-0.1046	NEUTRAL	NA	229	Too-Many
TCGA.AG.A00C.01A	14	50044452	50862392	146	-0.2614	NEUTRAL	NA	15	"ARF6,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SOS2,VCPKMT"
TCGA.AZ.4684.01A	14	50044452	50864251	155	-0.2522	NEUTRAL	NA	15	"ARF6,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SOS2,VCPKMT"
TCGA.AA.3930.01A	14	50050288	56114688	557	0.0426	NEUTRAL	NA	53	"ABHD12B,ARF6,ATG14,ATL1,ATP5S,BMP4,C14orf166,CDKL1,CDKN3,CGRRF1,CNIH1,DDHD1,DLGAP5,DNAAF2,ERO1L,FBXO34,FERMT2,FRMD6,GCH1,GMFB,GNG2,GNPNAT1,GPR137C,KLHDC1,KLHDC2,KTN1,L2HGDH,LGALS3,LRR1,MAP4K5,MAPK1IP1L,MGAT2,NEMF,NID2,NIN,POLE2,PSMC6,PTGDR,PTGER2,PYGL,RPL36AL,RPS29,SAMD4A,SAV1,SOCS4,SOS2,STYX,TBPL2,TMX1,TRIM9,TXNDC16,VCPKMT,WDHD1"
TCGA.A6.3810.01A	14	50094682	60069713	774	-0.2372	NEUTRAL	NA	71	"ABHD12B,ACTR10,AP5M1,ARF6,ARID4A,ATG14,ATL1,ATP5S,BMP4,C14orf105,C14orf166,C14orf37,CCDC175,CDKL1,CDKN3,CGRRF1,CNIH1,DAAM1,DACT1,DDHD1,DLGAP5,DNAAF2,ERO1L,EXOC5,FBXO34,FERMT2,FRMD6,GCH1,GMFB,GNG2,GNPNAT1,GPR135,GPR137C,JKAMP,KIAA0586,KLHDC1,KLHDC2,KTN1,L2HGDH,L3HYPDH,LGALS3,MAP4K5,MAPK1IP1L,NAA30,NEMF,NID2,NIN,OTX2,PELI2,POLE2,PSMA3,PSMC6,PTGDR,PTGER2,PYGL,RTN1,SAMD4A,SAV1,SLC35F4,SOCS4,SOS2,STYX,TBPL2,TIMM9,TMEM260,TMX1,TOMM20L,TRIM9,TXNDC16,VCPKMT,WDHD1"
TCGA.AG.3909.01A	14	50100598	50176934	19	-0.2573	NEUTRAL	NA	3	"DNAAF2,KLHDC1,POLE2"
TCGA.AA.A010.01A	14	50120665	50235140	26	-0.4832	NEUTRAL	NA	3	"KLHDC1,KLHDC2,POLE2"
TCGA.AA.A00N.01A	14	50154790	50235140	15	0.0039	NEUTRAL	NA	3	"KLHDC1,KLHDC2,POLE2"
TCGA.CK.5914.01A	14	50154790	50235140	15	0.0831	NEUTRAL	NA	3	"KLHDC1,KLHDC2,POLE2"
TCGA.AG.3909.01A	14	50190530	50218277	9	0.3291	NEUTRAL	NA	1	KLHDC1
TCGA.AG.3909.01A	14	50246272	50249531	5	-0.3718	NEUTRAL	NA	1	KLHDC2
TCGA.AG.3909.01A	14	50251316	50272697	11	-0.0833	NEUTRAL	NA	1	NEMF
TCGA.CK.5914.01A	14	50251316	50272697	11	-0.1826	NEUTRAL	NA	1	NEMF
TCGA.AA.A010.01A	14	50262462	50655167	56	0.1386	NEUTRAL	NA	4	"ARF6,NEMF,SOS2,VCPKMT"
TCGA.AG.3909.01A	14	50298705	50576327	18	-0.3236	NEUTRAL	NA	3	"ARF6,NEMF,VCPKMT"
TCGA.AG.4009.01A	14	50300096	50846775	72	-0.3549	NEUTRAL	NA	7	"ARF6,ATP5S,CDKL1,L2HGDH,NEMF,SOS2,VCPKMT"
TCGA.AG.A025.01A	14	50472290	77257598	1927	-0.0251	NEUTRAL	NA	199	Too-Many
TCGA.AG.3909.01A	14	50596623	50760783	28	0.2999	NEUTRAL	NA	2	"L2HGDH,SOS2"
TCGA.CK.5914.01A	14	50597192	50889780	60	-0.1544	NEUTRAL	NA	5	"ATP5S,CDKL1,L2HGDH,MAP4K5,SOS2"
TCGA.AA.A00N.01A	14	50605279	50750539	25	0.2936	NEUTRAL	NA	2	"L2HGDH,SOS2"
TCGA.AA.3831	14	50616877	73164421	7453	0.0002	NEUTRAL	NA	143	Too-Many
TCGA.AG.A00Y.01A	14	50619741	50789190	25	-0.0544	NEUTRAL	NA	3	"ATP5S,L2HGDH,SOS2"
TCGA.AA.A010.01A	14	50732035	50883061	36	0.2061	NEUTRAL	NA	3	"ATP5S,CDKL1,L2HGDH"
TCGA.AG.3909.01A	14	50768693	50883061	28	-0.4255	NEUTRAL	NA	3	"ATP5S,CDKL1,L2HGDH"
TCGA.A6.5667	14	50798036	55855006	1808	0.0794	NEUTRAL	NA	37	"ABHD12B,ATG14,ATL1,BMP4,C14orf166,CDKL1,CDKN3,CGRRF1,CNIH1,DDHD1,DLGAP5,ERO1L,FBXO34,FERMT2,FRMD6,GCH1,GMFB,GNG2,GNPNAT1,GPR137C,LGALS3,MAP4K5,MAPK1IP1L,NID2,NIN,PSMC6,PTGDR,PTGER2,PYGL,SAMD4A,SAV1,SOCS4,STYX,TMX1,TRIM9,TXNDC16,WDHD1"
TCGA.AG.A00Y.01A	14	50811643	107282751	3501	0.0019	NEUTRAL	NA	371	Too-Many
TCGA.AZ.4684.01A	14	50877147	56101197	386	0.1284	NEUTRAL	NA	38	"ABHD12B,ATG14,ATL1,BMP4,C14orf166,CDKN3,CGRRF1,CNIH1,DDHD1,DLGAP5,ERO1L,FBXO34,FERMT2,FRMD6,GCH1,GMFB,GNG2,GNPNAT1,GPR137C,KTN1,LGALS3,MAP4K5,MAPK1IP1L,NID2,NIN,PSMC6,PTGDR,PTGER2,PYGL,SAMD4A,SAV1,SOCS4,STYX,TBPL2,TMX1,TRIM9,TXNDC16,WDHD1"
TCGA.AG.4009.01A	14	50883061	51273396	73	-0.3789	NEUTRAL	NA	4	"ATL1,MAP4K5,NIN,SAV1"
TCGA.AA.A010.01A	14	50886683	50933251	21	-0.5035	NEUTRAL	NA	1	MAP4K5
TCGA.AA.3509.01A	14	50911721	53110229	182	0.1561	NEUTRAL	NA	17	"ABHD12B,ATL1,C14orf166,ERO1L,FRMD6,GNG2,GPR137C,MAP4K5,NID2,NIN,PTGDR,PTGER2,PYGL,SAV1,TMX1,TRIM9,TXNDC16"
TCGA.AA.A010.01A	14	50935321	51219197	39	0.2338	NEUTRAL	NA	4	"ATL1,MAP4K5,NIN,SAV1"
TCGA.AA.3850	14	50948318	51185458	53	0.21235	NEUTRAL	NA	3	"ATL1,MAP4K5,SAV1"
TCGA.AA.3844	14	50988917	72425990	6932	-0.075	NEUTRAL	NA	138	Too-Many
TCGA.CK.5914.01A	14	50998609	53173849	184	-0.0288	NEUTRAL	NA	17	"ABHD12B,ATL1,C14orf166,ERO1L,FRMD6,GNG2,GPR137C,MAP4K5,NID2,NIN,PTGDR,PTGER2,PYGL,SAV1,TMX1,TRIM9,TXNDC16"
TCGA.AA.A00A.01A	14	51098908	51259381	31	0.0715	NEUTRAL	NA	3	"ATL1,NIN,SAV1"
TCGA.AA.A00Q.01A	14	51131860	51259381	27	-0.2485	NEUTRAL	NA	2	"NIN,SAV1"
TCGA.AA.A00D.01A	14	51134542	51259381	27	0.0673	NEUTRAL	NA	2	"NIN,SAV1"
TCGA.AA.3850	14	51195364	62527862	4012	-0.03125	NEUTRAL	NA	72	"ABHD12B,ACTR10,AP5M1,ARID4A,ATG14,BMP4,C14orf105,C14orf166,C14orf37,C14orf39,CCDC175,CDKN3,CGRRF1,CNIH1,DAAM1,DACT1,DDHD1,DHRS7,DLGAP5,ERO1L,EXOC5,FBXO34,FERMT2,FRMD6,GCH1,GMFB,GNG2,GNPNAT1,GPR135,GPR137C,HIF1A,JKAMP,KIAA0586,KTN1,L3HYPDH,LGALS3,MAPK1IP1L,MNAT1,NAA30,NID2,NIN,OTX2,PCNXL4,PELI2,PPM1A,PRKCH,PSMA3,PSMC6,PTGDR,PTGER2,PYGL,RTN1,SAMD4A,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SOCS4,STYX,SYT16,TBPL2,TIMM9,TMEM260,TMEM30B,TMX1,TOMM20L,TRIM9,TRMT5,TXNDC16,WDHD1"
TCGA.AA.A00Q.01A	14	51273396	51445980	31	0.1823	NEUTRAL	NA	4	"ABHD12B,NIN,PYGL,TRIM9"
TCGA.AG.3909.01A	14	51288570	51355520	8	-0.4679	NEUTRAL	NA	2	"ABHD12B,NIN"
TCGA.AG.4009.01A	14	51353286	53570383	174	-0.4636	NEUTRAL	NA	18	"ABHD12B,C14orf166,DDHD1,ERO1L,FERMT2,FRMD6,GNG2,GNPNAT1,GPR137C,NID2,PSMC6,PTGDR,PTGER2,PYGL,STYX,TMX1,TRIM9,TXNDC16"
TCGA.AG.3909.01A	14	51368538	52433227	52	0.3443	NEUTRAL	NA	6	"ABHD12B,FRMD6,GNG2,PYGL,TMX1,TRIM9"
TCGA.AA.A00N.01A	14	51370049	51390639	16	0.3406	NEUTRAL	NA	2	"ABHD12B,PYGL"
TCGA.AA.A010.01A	14	51370742	52985841	99	0.3436	NEUTRAL	NA	11	"ABHD12B,C14orf166,FRMD6,GNG2,NID2,PTGDR,PTGER2,PYGL,TMX1,TRIM9,TXNDC16"
TCGA.AA.A00Q.01A	14	51448548	52793912	55	-0.1154	NEUTRAL	NA	8	"C14orf166,FRMD6,GNG2,NID2,PTGDR,PTGER2,TMX1,TRIM9"
TCGA.AA.3941	14	51541051	52005569	200	0.3294	NEUTRAL	NA	3	"FRMD6,TMX1,TRIM9"
TCGA.AA.3982	14	51839614	52421030	316	-0.1403	NEUTRAL	NA	2	"FRMD6,GNG2"
TCGA.AA.3941	14	52014010	52140054	79	0.2209	NEUTRAL	NA	1	FRMD6
TCGA.F5.6465	14	52171090	107285436	17772	-0.0227	NEUTRAL	NA	362	Too-Many
TCGA.AA.3941	14	52178890	52416411	115	0.2758	NEUTRAL	NA	2	"FRMD6,GNG2"
TCGA.AA.3833	14	52235220	107285436	17755	-0.0117	NEUTRAL	NA	361	Too-Many
TCGA.AA.3982	14	52425505	56817008	1587	-0.008	NEUTRAL	NA	30	"ATG14,BMP4,C14orf166,CDKN3,CGRRF1,CNIH1,DDHD1,DLGAP5,ERO1L,FBXO34,FERMT2,GCH1,GMFB,GNG2,GNPNAT1,GPR137C,KTN1,LGALS3,MAPK1IP1L,NID2,PELI2,PSMC6,PTGDR,PTGER2,SAMD4A,SOCS4,STYX,TBPL2,TXNDC16,WDHD1"
TCGA.AG.3909.01A	14	52477567	53174976	61	0.0303	NEUTRAL	NA	7	"ERO1L,GPR137C,NID2,PSMC6,PTGDR,PTGER2,TXNDC16"
TCGA.AA.3941	14	52567360	52979949	171	0.3665	NEUTRAL	NA	3	"PTGDR,PTGER2,TXNDC16"
TCGA.A6.6649	14	52715485	54451301	573	0.1472	NEUTRAL	NA	11	"BMP4,DDHD1,ERO1L,FERMT2,GNPNAT1,GPR137C,PSMC6,PTGDR,PTGER2,STYX,TXNDC16"
TCGA.AA.A00Q.01A	14	52899000	65233325	651	0.2169	NEUTRAL	NA	77	"ACTR10,AKAP5,AP5M1,ARID4A,ATG14,BMP4,C14orf105,C14orf37,C14orf39,CCDC175,CDKN3,CGRRF1,CNIH1,DAAM1,DACT1,DDHD1,DHRS7,DLGAP5,ERO1L,ESR2,EXOC5,FBXO34,FERMT2,GCH1,GMFB,GNPNAT1,GPHB5,GPR135,GPR137C,HIF1A,HSPA2,JKAMP,KCNH5,KIAA0586,KTN1,L3HYPDH,LGALS3,MAPK1IP1L,MNAT1,MTHFD1,NAA30,OTX2,PCNXL4,PELI2,PLEKHG3,PPM1A,PPP1R36,PPP2R5E,PRKCH,PSMA3,PSMC6,RHOJ,RTN1,SAMD4A,SGPP1,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SOCS4,SPTB,STYX,SYNE2,SYT16,TBPL2,TIMM9,TMEM260,TMEM30B,TOMM20L,TRMT5,TXNDC16,WDHD1,WDR89,ZBTB1,ZBTB25"
TCGA.AA.A010.01A	14	53019819	54868168	78	0.0301	NEUTRAL	NA	9	"BMP4,CDKN3,DDHD1,ERO1L,FERMT2,GNPNAT1,GPR137C,PSMC6,STYX"
TCGA.A6.3808.01A	14	53100498	56083187	187	-0.358	NEUTRAL	NA	23	"ATG14,BMP4,CDKN3,CGRRF1,CNIH1,DDHD1,DLGAP5,ERO1L,FBXO34,FERMT2,GCH1,GMFB,GNPNAT1,GPR137C,KTN1,LGALS3,MAPK1IP1L,PSMC6,SAMD4A,SOCS4,STYX,TBPL2,WDHD1"
TCGA.AA.3509.01A	14	53112855	53226340	31	-0.4763	NEUTRAL	NA	3	"ERO1L,PSMC6,STYX"
TCGA.AG.A00C.01A	14	53138288	53251164	30	-0.3514	NEUTRAL	NA	4	"ERO1L,GNPNAT1,PSMC6,STYX"
TCGA.AG.3611.01A	14	53148988	53175442	6	-0.3999	NEUTRAL	NA	2	"ERO1L,PSMC6"
TCGA.AG.3611.01A	14	53177754	55493381	116	0.0361	NEUTRAL	NA	13	"BMP4,CDKN3,CGRRF1,CNIH1,DDHD1,FERMT2,GCH1,GMFB,GNPNAT1,PSMC6,SAMD4A,STYX,WDHD1"
TCGA.AA.A00N.01A	14	53197123	53237687	10	-0.1385	NEUTRAL	NA	1	STYX
TCGA.AG.3909.01A	14	53197123	53237687	10	0.0878	NEUTRAL	NA	1	STYX
TCGA.CK.5914.01A	14	53197123	54863694	45	0.0894	NEUTRAL	NA	6	"BMP4,CDKN3,DDHD1,FERMT2,GNPNAT1,STYX"
TCGA.AA.3509.01A	14	53235533	54907909	47	0.1066	NEUTRAL	NA	7	"BMP4,CDKN3,CNIH1,DDHD1,FERMT2,GNPNAT1,STYX"
TCGA.AG.3909.01A	14	53325047	53570383	25	0.2779	NEUTRAL	NA	2	"DDHD1,FERMT2"
TCGA.AA.A00D.01A	14	53325047	54868168	29	0.3426	NEUTRAL	NA	4	"BMP4,CDKN3,DDHD1,FERMT2"
TCGA.AG.A008.01A	14	53417079	53522361	5	-0.1712	NEUTRAL	NA	2	"DDHD1,FERMT2"
TCGA.AA.A00A.01A	14	53417079	54863694	16	0.0835	NEUTRAL	NA	4	"BMP4,CDKN3,DDHD1,FERMT2"
TCGA.AG.A008.01A	14	53525157	107282751	3296	0.1374	NEUTRAL	NA	349	Too-Many
TCGA.AA.3941	14	53791310	53797490	6	-0.3161	NEUTRAL	NA	0	None
TCGA.AA.3941	14	53837042	54660414	306	0.1089	NEUTRAL	NA	1	BMP4
TCGA.AG.A00C.01A	14	54416738	54950341	19	-0.1239	NEUTRAL	NA	4	"BMP4,CDKN3,CNIH1,GMFB"
TCGA.NH.A6GC	14	54635001	62719834	2756	0.3289	NEUTRAL	NA	52	"ACTR10,AP5M1,ARID4A,ATG14,C14orf105,C14orf37,C14orf39,CCDC175,CDKN3,CGRRF1,CNIH1,DAAM1,DACT1,DHRS7,DLGAP5,EXOC5,FBXO34,GCH1,GMFB,GPR135,HIF1A,JKAMP,KIAA0586,KTN1,L3HYPDH,LGALS3,MAPK1IP1L,MNAT1,NAA30,OTX2,PCNXL4,PELI2,PPM1A,PRKCH,PSMA3,RTN1,SAMD4A,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SOCS4,SYT16,TBPL2,TIMM9,TMEM260,TMEM30B,TOMM20L,TRMT5,WDHD1"
TCGA.AZ.5403	14	54635001	107285436	16828	-0.0127	NEUTRAL	NA	347	Too-Many
TCGA.CK.5914.01A	14	54866562	54950341	18	-0.5018	NEUTRAL	NA	3	"CDKN3,CNIH1,GMFB"
TCGA.A6.3807	14	54889412	58720967	1460	-0.0003	NEUTRAL	NA	25	"ACTR10,AP5M1,ATG14,C14orf105,C14orf37,CGRRF1,CNIH1,DLGAP5,EXOC5,FBXO34,GCH1,GMFB,KTN1,LGALS3,MAPK1IP1L,NAA30,OTX2,PELI2,PSMA3,SAMD4A,SLC35F4,SOCS4,TBPL2,TMEM260,WDHD1"
TCGA.AA.A010.01A	14	54907909	58599761	218	0.2125	NEUTRAL	NA	23	"AP5M1,ATG14,C14orf105,C14orf37,CGRRF1,CNIH1,DLGAP5,EXOC5,FBXO34,GCH1,GMFB,KTN1,LGALS3,MAPK1IP1L,NAA30,OTX2,PELI2,SAMD4A,SLC35F4,SOCS4,TBPL2,TMEM260,WDHD1"
TCGA.AG.4009.01A	14	54947535	58563443	206	-0.3843	NEUTRAL	NA	22	"AP5M1,ATG14,C14orf105,C14orf37,CGRRF1,DLGAP5,EXOC5,FBXO34,GCH1,GMFB,KTN1,LGALS3,MAPK1IP1L,NAA30,OTX2,PELI2,SAMD4A,SLC35F4,SOCS4,TBPL2,TMEM260,WDHD1"
TCGA.DM.A28M.01A	14	54950341	56103112	110	0.1297	NEUTRAL	NA	13	"ATG14,CGRRF1,DLGAP5,FBXO34,GCH1,GMFB,KTN1,LGALS3,MAPK1IP1L,SAMD4A,SOCS4,TBPL2,WDHD1"
TCGA.AA.A00N.01A	14	54955545	55215486	11	0.1668	NEUTRAL	NA	3	"CGRRF1,GMFB,SAMD4A"
TCGA.AG.3909.01A	14	54955545	55467199	42	0.2926	NEUTRAL	NA	5	"CGRRF1,GCH1,GMFB,SAMD4A,WDHD1"
TCGA.CK.5914.01A	14	54976671	55480151	49	0.2045	NEUTRAL	NA	4	"CGRRF1,GCH1,SAMD4A,WDHD1"
TCGA.AA.3509.01A	14	55203770	56083187	93	-0.2228	NEUTRAL	NA	11	"ATG14,DLGAP5,FBXO34,GCH1,KTN1,LGALS3,MAPK1IP1L,SAMD4A,SOCS4,TBPL2,WDHD1"
TCGA.AG.A01W.01A	14	55220472	57130369	64	0.1756	NEUTRAL	NA	13	"ATG14,DLGAP5,FBXO34,GCH1,KTN1,LGALS3,MAPK1IP1L,PELI2,SAMD4A,SOCS4,TBPL2,TMEM260,WDHD1"
TCGA.AA.A00N.01A	14	55462283	55474971	6	-0.1001	NEUTRAL	NA	1	WDHD1
TCGA.AG.3909.01A	14	55467556	55647874	33	-0.2193	NEUTRAL	NA	5	"DLGAP5,LGALS3,MAPK1IP1L,SOCS4,WDHD1"
TCGA.AG.3611.01A	14	55509783	55615022	5	-0.245	NEUTRAL	NA	4	"DLGAP5,LGALS3,MAPK1IP1L,SOCS4"
TCGA.CK.5914.01A	14	55529289	55878310	36	-0.2169	NEUTRAL	NA	5	"ATG14,DLGAP5,FBXO34,LGALS3,MAPK1IP1L"
TCGA.AA.A00N.01A	14	55615022	55878310	29	0.1722	NEUTRAL	NA	3	"ATG14,DLGAP5,FBXO34"
TCGA.AG.3611.01A	14	55617440	55650261	16	0.3551	NEUTRAL	NA	1	DLGAP5
TCGA.AG.3909.01A	14	55649033	55878310	14	0.3318	NEUTRAL	NA	3	"ATG14,DLGAP5,FBXO34"
TCGA.AG.3611.01A	14	55655613	59835320	189	0.0205	NEUTRAL	NA	22	"ACTR10,AP5M1,ARID4A,ATG14,C14orf105,C14orf37,DAAM1,DACT1,DLGAP5,EXOC5,FBXO34,KIAA0586,KTN1,NAA30,OTX2,PELI2,PSMA3,SLC35F4,TBPL2,TIMM9,TMEM260,TOMM20L"
TCGA.AA.3977	14	55863828	57066166	581	0.0657	NEUTRAL	NA	5	"ATG14,KTN1,PELI2,TBPL2,TMEM260"
TCGA.A6.5667	14	55863828	107285436	16497	0.055	NEUTRAL	NA	335	Too-Many
TCGA.AG.3909.01A	14	55907064	57714317	81	0.2724	NEUTRAL	NA	6	"EXOC5,KTN1,OTX2,PELI2,TBPL2,TMEM260"
TCGA.CK.5914.01A	14	56083187	56142493	36	0.2673	NEUTRAL	NA	1	KTN1
TCGA.AA.3509.01A	14	56084631	56101197	6	0.365	NEUTRAL	NA	1	KTN1
TCGA.AA.3941	14	56092718	56819576	374	0.363	NEUTRAL	NA	2	"KTN1,PELI2"
TCGA.CK.4948.01B	14	56103112	56107593	7	0.3618	NEUTRAL	NA	1	KTN1
TCGA.CK.4948.01B	14	56108343	56126306	13	0.0298	NEUTRAL	NA	1	KTN1
TCGA.DM.A28M.01A	14	56113610	57676619	53	0.3584	NEUTRAL	NA	5	"EXOC5,KTN1,OTX2,PELI2,TMEM260"
TCGA.AA.3509.01A	14	56113610	58604706	96	0.3754	NEUTRAL	NA	10	"AP5M1,C14orf105,C14orf37,EXOC5,KTN1,NAA30,OTX2,PELI2,SLC35F4,TMEM260"
TCGA.AA.3930.01A	14	56115457	107282751	3419	-0.4725	NEUTRAL	NA	333	Too-Many
TCGA.CK.4948.01B	14	56128249	57046603	20	0.2904	NEUTRAL	NA	3	"KTN1,PELI2,TMEM260"
TCGA.A6.6649	14	56488393	57054103	316	-0.1436	NEUTRAL	NA	2	"PELI2,TMEM260"
TCGA.AA.3941	14	56842607	57042803	111	0.3324	NEUTRAL	NA	0	None
TCGA.AA.3982	14	56842607	57066166	121	-0.0497	NEUTRAL	NA	1	TMEM260
TCGA.AF.2690	14	56993405	67667509	3185	0.1907	NEUTRAL	NA	61	"ACTR10,AKAP5,AP5M1,ARID4A,C14orf105,C14orf37,C14orf39,CCDC175,CHURC1,CHURC1-FNTB,DAAM1,DACT1,DHRS7,ESR2,EXOC5,FAM71D,FNTB,FUT8,GPHB5,GPHN,GPR135,GPX2,HIF1A,HSPA2,JKAMP,KCNH5,KIAA0586,L3HYPDH,MAX,MNAT1,MTHFD1,NAA30,OTX2,PCNXL4,PLEKHG3,PPM1A,PPP1R36,PPP2R5E,PRKCH,PSMA3,RAB15,RHOJ,RTN1,SGPP1,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SPTB,SYNE2,SYT16,TIMM9,TMEM260,TMEM30B,TOMM20L,TRMT5,WDR89,ZBTB1,ZBTB25"
TCGA.AA.A00N.01A	14	57046603	57735255	36	0.3454	NEUTRAL	NA	3	"EXOC5,OTX2,TMEM260"
TCGA.CK.4948.01B	14	57051633	60752296	224	-0.018	NEUTRAL	NA	24	"ACTR10,AP5M1,ARID4A,C14orf105,C14orf37,CCDC175,DAAM1,DACT1,DHRS7,EXOC5,GPR135,JKAMP,KIAA0586,L3HYPDH,NAA30,OTX2,PCNXL4,PPM1A,PSMA3,RTN1,SLC35F4,TIMM9,TMEM260,TOMM20L"
TCGA.AG.3891.01A	14	57051633	77491738	1489	-0.3892	NEUTRAL	NA	157	Too-Many
TCGA.A6.6649	14	57065773	57130786	34	-0.1969	NEUTRAL	NA	1	TMEM260
TCGA.AA.3864	14	57069274	98196332	13610	0.049	NEUTRAL	NA	258	Too-Many
TCGA.AA.3977	14	57069274	99550541	14397	0.0475	NEUTRAL	NA	259	Too-Many
TCGA.CK.5914.01A	14	57070491	57113924	13	-0.0311	NEUTRAL	NA	1	TMEM260
TCGA.AA.3982	14	57071003	58306984	444	-0.0473	NEUTRAL	NA	7	"AP5M1,C14orf105,EXOC5,NAA30,OTX2,SLC35F4,TMEM260"
TCGA.AA.3941	14	57072998	62377773	1676	0.3332	NEUTRAL	NA	35	"ACTR10,AP5M1,ARID4A,C14orf105,C14orf37,C14orf39,CCDC175,DAAM1,DACT1,DHRS7,EXOC5,GPR135,HIF1A,JKAMP,KIAA0586,L3HYPDH,MNAT1,NAA30,OTX2,PCNXL4,PPM1A,PRKCH,PSMA3,RTN1,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,TIMM9,TMEM260,TMEM30B,TOMM20L,TRMT5"
TCGA.AG.A01W.01A	14	57133142	62918511	324	-0.244	NEUTRAL	NA	35	"ACTR10,AP5M1,ARID4A,C14orf105,C14orf37,C14orf39,CCDC175,DAAM1,DACT1,DHRS7,EXOC5,GPR135,HIF1A,JKAMP,KIAA0586,L3HYPDH,MNAT1,NAA30,OTX2,PCNXL4,PPM1A,PRKCH,PSMA3,RTN1,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SYT16,TIMM9,TMEM30B,TOMM20L,TRMT5"
TCGA.QG.A5YW	14	57204058	57665760	178	-0.4553	NEUTRAL	NA	1	OTX2
TCGA.A6.6649	14	57235558	58823032	528	-0.1615	NEUTRAL	NA	10	"ACTR10,AP5M1,ARID4A,C14orf105,C14orf37,EXOC5,NAA30,OTX2,PSMA3,SLC35F4"
TCGA.AG.3584	14	57564524	107285436	15703	0.309	NEUTRAL	NA	329	Too-Many
TCGA.AG.3726	14	57629538	67107590	2841	0.0113	NEUTRAL	NA	58	"ACTR10,AKAP5,AP5M1,ARID4A,C14orf105,C14orf37,C14orf39,CCDC175,CHURC1,CHURC1-FNTB,DAAM1,DACT1,DHRS7,ESR2,EXOC5,FNTB,FUT8,GPHB5,GPHN,GPR135,GPX2,HIF1A,HSPA2,JKAMP,KCNH5,KIAA0586,L3HYPDH,MAX,MNAT1,MTHFD1,NAA30,PCNXL4,PLEKHG3,PPM1A,PPP1R36,PPP2R5E,PRKCH,PSMA3,RAB15,RHOJ,RTN1,SGPP1,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SPTB,SYNE2,SYT16,TIMM9,TMEM30B,TOMM20L,TRMT5,WDR89,ZBTB1,ZBTB25"
TCGA.AA.3818	14	57629538	87597424	9537	-0.0068	NEUTRAL	NA	181	Too-Many
TCGA.QG.A5YW	14	57668858	107285436	15578	0.2714	NEUTRAL	NA	329	Too-Many
TCGA.DM.A28M.01A	14	57696410	60908724	204	0.2152	NEUTRAL	NA	23	"ACTR10,AP5M1,ARID4A,C14orf105,C14orf37,C14orf39,CCDC175,DAAM1,DACT1,DHRS7,EXOC5,GPR135,JKAMP,KIAA0586,L3HYPDH,NAA30,PCNXL4,PPM1A,PSMA3,RTN1,SLC35F4,TIMM9,TOMM20L"
TCGA.AG.3909.01A	14	57735973	57866497	10	-0.4965	NEUTRAL	NA	2	"AP5M1,NAA30"
TCGA.CK.5914.01A	14	57735973	57948239	14	-0.2297	NEUTRAL	NA	3	"AP5M1,C14orf105,NAA30"
TCGA.AA.A00D.01A	14	57938026	58605466	17	0.1972	NEUTRAL	NA	3	"C14orf105,C14orf37,SLC35F4"
TCGA.CK.5914.01A	14	57949725	58563443	15	0.3515	NEUTRAL	NA	3	"C14orf105,C14orf37,SLC35F4"
TCGA.AA.3982	14	58315475	60141948	634	-0.0065	NEUTRAL	NA	15	"ACTR10,ARID4A,C14orf37,CCDC175,DAAM1,DACT1,GPR135,JKAMP,KIAA0586,L3HYPDH,PSMA3,RTN1,SLC35F4,TIMM9,TOMM20L"
TCGA.AG.3909.01A	14	58598182	58681916	10	-0.094	NEUTRAL	NA	2	"ACTR10,C14orf37"
TCGA.CK.5914.01A	14	58598182	58910660	63	-0.4647	NEUTRAL	NA	7	"ACTR10,ARID4A,C14orf37,KIAA0586,PSMA3,TIMM9,TOMM20L"
TCGA.AZ.4684.01A	14	58669523	58954578	74	-0.1811	NEUTRAL	NA	6	"ACTR10,ARID4A,KIAA0586,PSMA3,TIMM9,TOMM20L"
TCGA.AG.3906.01A	14	58680294	93172789	2039	0.0061	NEUTRAL	NA	206	Too-Many
TCGA.AG.3909.01A	14	58686360	58738525	15	0.3654	NEUTRAL	NA	2	"ACTR10,PSMA3"
TCGA.AA.A010.01A	14	58690279	64669482	373	0.0337	NEUTRAL	NA	35	"ACTR10,ARID4A,C14orf39,CCDC175,DAAM1,DACT1,DHRS7,GPHB5,GPR135,HIF1A,JKAMP,KCNH5,KIAA0586,L3HYPDH,MNAT1,PCNXL4,PPM1A,PPP2R5E,PRKCH,PSMA3,RHOJ,RTN1,SGPP1,SIX1,SIX4,SIX6,SLC38A6,SNAPC1,SYNE2,SYT16,TIMM9,TMEM30B,TOMM20L,TRMT5,WDR89"
TCGA.AA.A00N.01A	14	58697057	58738525	13	0.3226	NEUTRAL	NA	2	"ACTR10,PSMA3"
TCGA.AA.3509.01A	14	58770161	60631856	127	0.0348	NEUTRAL	NA	13	"ARID4A,CCDC175,DAAM1,DACT1,DHRS7,GPR135,JKAMP,KIAA0586,L3HYPDH,PCNXL4,RTN1,TIMM9,TOMM20L"
TCGA.AA.A00N.01A	14	58785198	58796673	5	-0.0731	NEUTRAL	NA	1	ARID4A
TCGA.AG.3909.01A	14	58785198	58862946	19	0.3149	NEUTRAL	NA	2	"ARID4A,TOMM20L"
TCGA.AG.3909.01A	14	58878563	59014457	31	0.3441	NEUTRAL	NA	2	"KIAA0586,TIMM9"
TCGA.AG.4009.01A	14	58896020	59014457	28	-0.3104	NEUTRAL	NA	1	KIAA0586
TCGA.CK.5914.01A	14	58915031	59014457	24	0.0881	NEUTRAL	NA	1	KIAA0586
TCGA.A6.3808.01A	14	58937284	60631856	83	0.3493	NEUTRAL	NA	10	"CCDC175,DAAM1,DACT1,DHRS7,GPR135,JKAMP,KIAA0586,L3HYPDH,PCNXL4,RTN1"
TCGA.AA.3862.01A	14	58937284	64447350	231	-0.4948	NEUTRAL	NA	30	"C14orf39,CCDC175,DAAM1,DACT1,DHRS7,GPHB5,GPR135,HIF1A,JKAMP,KCNH5,KIAA0586,L3HYPDH,MNAT1,PCNXL4,PPM1A,PPP2R5E,PRKCH,RHOJ,RTN1,SGPP1,SIX1,SIX4,SIX6,SLC38A6,SNAPC1,SYNE2,SYT16,TMEM30B,TRMT5,WDR89"
TCGA.AZ.4684.01A	14	58955322	60756473	81	0.2174	NEUTRAL	NA	11	"CCDC175,DAAM1,DACT1,DHRS7,GPR135,JKAMP,KIAA0586,L3HYPDH,PCNXL4,PPM1A,RTN1"
TCGA.AG.4009.01A	14	59113969	64488006	228	-0.4658	NEUTRAL	NA	29	"C14orf39,CCDC175,DAAM1,DACT1,DHRS7,GPHB5,GPR135,HIF1A,JKAMP,KCNH5,L3HYPDH,MNAT1,PCNXL4,PPM1A,PPP2R5E,PRKCH,RHOJ,RTN1,SGPP1,SIX1,SIX4,SIX6,SLC38A6,SNAPC1,SYNE2,SYT16,TMEM30B,TRMT5,WDR89"
TCGA.AG.3611.01A	14	59930438	60097095	12	-0.3504	NEUTRAL	NA	5	"CCDC175,GPR135,JKAMP,L3HYPDH,RTN1"
TCGA.CK.5914.01A	14	59930438	61519021	97	-0.278	NEUTRAL	NA	15	"C14orf39,CCDC175,DHRS7,GPR135,JKAMP,L3HYPDH,MNAT1,PCNXL4,PPM1A,RTN1,SIX1,SIX4,SIX6,SLC38A6,TRMT5"
TCGA.AG.3909.01A	14	59950520	60938066	51	-0.0877	NEUTRAL	NA	8	"C14orf39,CCDC175,DHRS7,JKAMP,L3HYPDH,PCNXL4,PPM1A,RTN1"
TCGA.AA.A00N.01A	14	60063388	61451387	71	-0.237	NEUTRAL	NA	11	"C14orf39,DHRS7,MNAT1,PCNXL4,PPM1A,RTN1,SIX1,SIX4,SIX6,SLC38A6,TRMT5"
TCGA.A6.3810.01A	14	60070518	60337077	8	0.1856	NEUTRAL	NA	1	RTN1
TCGA.AA.3982	14	60149258	61369025	221	-0.1718	NEUTRAL	NA	9	"C14orf39,DHRS7,MNAT1,PCNXL4,PPM1A,RTN1,SIX1,SIX4,SIX6"
TCGA.AG.3611.01A	14	60193605	88862427	1379	0.0683	NEUTRAL	NA	167	Too-Many
TCGA.A6.3810.01A	14	60574310	107282751	3311	-0.2953	NEUTRAL	NA	310	Too-Many
TCGA.A6.2681	14	60705468	92236058	10019	-0.4903	NEUTRAL	NA	182	Too-Many
TCGA.CK.4948.01B	14	60756473	60938066	14	0.3571	NEUTRAL	NA	2	"C14orf39,PPM1A"
TCGA.A6.3807	14	60799833	107285436	14624	-0.3653	NEUTRAL	NA	307	Too-Many
TCGA.DM.A28M.01A	14	60938066	66190813	374	0.1592	NEUTRAL	NA	35	"AKAP5,C14orf39,CHURC1,CHURC1-FNTB,ESR2,FNTB,FUT8,GPHB5,GPX2,HIF1A,HSPA2,KCNH5,MAX,MNAT1,MTHFD1,PLEKHG3,PPP1R36,PPP2R5E,PRKCH,RAB15,RHOJ,SGPP1,SIX1,SIX4,SIX6,SLC38A6,SNAPC1,SPTB,SYNE2,SYT16,TMEM30B,TRMT5,WDR89,ZBTB1,ZBTB25"
TCGA.CK.4948.01B	14	60944961	65568191	365	-0.0422	NEUTRAL	NA	34	"AKAP5,C14orf39,CHURC1,CHURC1-FNTB,ESR2,FNTB,GPHB5,GPX2,HIF1A,HSPA2,KCNH5,MAX,MNAT1,MTHFD1,PLEKHG3,PPP1R36,PPP2R5E,PRKCH,RAB15,RHOJ,SGPP1,SIX1,SIX4,SIX6,SLC38A6,SNAPC1,SPTB,SYNE2,SYT16,TMEM30B,TRMT5,WDR89,ZBTB1,ZBTB25"
TCGA.F4.6807	14	61001494	78788990	5603	-0.4544	NEUTRAL	NA	149	Too-Many
TCGA.A6.6649	14	61072874	62200517	376	-0.1405	NEUTRAL	NA	8	"HIF1A,MNAT1,PRKCH,SIX1,SIX4,SLC38A6,TMEM30B,TRMT5"
TCGA.AG.3909.01A	14	61189918	61451387	18	-0.2101	NEUTRAL	NA	4	"MNAT1,SIX4,SLC38A6,TRMT5"
TCGA.AA.3982	14	61382746	62523147	411	0.0938	NEUTRAL	NA	8	"HIF1A,MNAT1,PRKCH,SLC38A6,SNAPC1,SYT16,TMEM30B,TRMT5"
TCGA.AG.3909.01A	14	61482567	61857931	15	0.0949	NEUTRAL	NA	3	"PRKCH,SLC38A6,TMEM30B"
TCGA.CK.5914.01A	14	61550223	62203566	24	0.3195	NEUTRAL	NA	4	"HIF1A,PRKCH,SLC38A6,TMEM30B"
TCGA.AA.3509.01A	14	61550223	64988211	231	-0.167	NEUTRAL	NA	18	"AKAP5,ESR2,GPHB5,HIF1A,KCNH5,MTHFD1,PPP2R5E,PRKCH,RHOJ,SGPP1,SLC38A6,SNAPC1,SYNE2,SYT16,TMEM30B,WDR89,ZBTB1,ZBTB25"
TCGA.AZ.4684.01A	14	61550223	64988211	231	-0.0892	NEUTRAL	NA	18	"AKAP5,ESR2,GPHB5,HIF1A,KCNH5,MTHFD1,PPP2R5E,PRKCH,RHOJ,SGPP1,SLC38A6,SNAPC1,SYNE2,SYT16,TMEM30B,WDR89,ZBTB1,ZBTB25"
TCGA.AA.A00N.01A	14	62016386	62188200	4	-0.2102	NEUTRAL	NA	2	"HIF1A,PRKCH"
TCGA.AG.3909.01A	14	62016386	62567100	29	-0.2542	NEUTRAL	NA	4	"HIF1A,PRKCH,SNAPC1,SYT16"
TCGA.A6.3808.01A	14	62193387	63851122	47	0.1518	NEUTRAL	NA	7	"GPHB5,HIF1A,KCNH5,PPP2R5E,RHOJ,SNAPC1,SYT16"
TCGA.CK.5914.01A	14	62204798	63179318	23	-0.3488	NEUTRAL	NA	4	"HIF1A,KCNH5,SNAPC1,SYT16"
TCGA.AA.A00L.01A	14	62233542	62261618	9	0.2658	NEUTRAL	NA	1	SNAPC1
TCGA.AA.3941	14	62378644	62477089	23	-0.0848	NEUTRAL	NA	1	SYT16
TCGA.AA.A00N.01A	14	62462691	62567100	6	-0.0452	NEUTRAL	NA	1	SYT16
TCGA.AA.A00A.01A	14	62462691	63174224	5	-0.2006	NEUTRAL	NA	2	"KCNH5,SYT16"
TCGA.AA.A00D.01A	14	62462691	63848727	22	0.1739	NEUTRAL	NA	5	"GPHB5,KCNH5,PPP2R5E,RHOJ,SYT16"
TCGA.AA.A00L.01A	14	62462691	73542955	629	-0.2417	NEUTRAL	NA	68	"ACTN1,ADAM20,ADAM21,AKAP5,ARG2,ATP6V1D,CCDC177,CHURC1,CHURC1-FNTB,COX16,DCAF4,DCAF5,DPF3,EIF2S1,ERH,ESR2,EXD2,FAM71D,FNTB,FUT8,GALNT16,GPHB5,GPHN,GPX2,HSPA2,KCNH5,MAP3K9,MAX,MED6,MPP5,MTHFD1,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHG3,PLEKHH1,PPP1R36,PPP2R5E,RAB15,RAD51B,RBM25,RDH11,RDH12,RGS6,RHOJ,SGPP1,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SPTB,SRSF5,SUSD6,SYNE2,SYNJ2BP,SYNJ2BP-COX16,SYT16,TMEM229B,TTC9,VTI1B,WDR89,ZBTB1,ZBTB25,ZFP36L1,ZFYVE1,ZFYVE26"
TCGA.AA.3982	14	62527862	62924314	158	-0.2157	NEUTRAL	NA	1	SYT16
TCGA.AA.3941	14	62527862	63495216	383	-0.2223	NEUTRAL	NA	2	"KCNH5,SYT16"
TCGA.A6.6649	14	62705136	62792457	30	-0.0537	NEUTRAL	NA	0	None
TCGA.NH.A6GC	14	62721561	62792457	23	0.0054	NEUTRAL	NA	0	None
TCGA.NH.A6GC	14	62796719	107285436	14067	0.3021	NEUTRAL	NA	295	Too-Many
TCGA.AG.A01W.01A	14	62931646	63504134	18	-0.146	NEUTRAL	NA	1	KCNH5
TCGA.A6.6649	14	62933076	66213464	938	-0.1378	NEUTRAL	NA	23	"AKAP5,CHURC1,CHURC1-FNTB,ESR2,FNTB,FUT8,GPHB5,GPX2,HSPA2,KCNH5,MAX,MTHFD1,PLEKHG3,PPP1R36,PPP2R5E,RAB15,RHOJ,SGPP1,SPTB,SYNE2,WDR89,ZBTB1,ZBTB25"
TCGA.AA.3982	14	62937341	62942817	6	-0.342	NEUTRAL	NA	0	None
TCGA.AA.3982	14	62949681	63739314	278	-0.2636	NEUTRAL	NA	2	"KCNH5,RHOJ"
TCGA.AG.3909.01A	14	63174224	64490933	70	0.3432	NEUTRAL	NA	7	"GPHB5,KCNH5,PPP2R5E,RHOJ,SGPP1,SYNE2,WDR89"
TCGA.AA.3854	14	63214687	107285436	13920	0.0175	NEUTRAL	NA	295	Too-Many
TCGA.AA.A00A.01A	14	63246406	64194010	31	0.3768	NEUTRAL	NA	6	"GPHB5,KCNH5,PPP2R5E,RHOJ,SGPP1,WDR89"
TCGA.AA.3850	14	63498894	63671233	47	0.02725	NEUTRAL	NA	2	"KCNH5,RHOJ"
TCGA.AG.A01W.01A	14	63513029	64304108	173	-0.3799	NEUTRAL	NA	5	"GPHB5,PPP2R5E,RHOJ,SGPP1,WDR89"
TCGA.AA.3850	14	63699770	66199138	655	0.35295	NEUTRAL	NA	22	"AKAP5,CHURC1,CHURC1-FNTB,ESR2,FNTB,FUT8,GPHB5,GPX2,HSPA2,MAX,MTHFD1,PLEKHG3,PPP1R36,PPP2R5E,RAB15,RHOJ,SGPP1,SPTB,SYNE2,WDR89,ZBTB1,ZBTB25"
TCGA.AA.3982	14	63740440	63871586	68	0.1869	NEUTRAL	NA	3	"GPHB5,PPP2R5E,RHOJ"
TCGA.AA.3941	14	63867139	63892843	10	-0.0367	NEUTRAL	NA	1	PPP2R5E
TCGA.AA.3982	14	63888321	68564710	1108	0.1745	NEUTRAL	NA	35	"AKAP5,ARG2,ATP6V1D,CHURC1,CHURC1-FNTB,EIF2S1,ESR2,FAM71D,FNTB,FUT8,GPHN,GPX2,HSPA2,MAX,MPP5,MTHFD1,PIGH,PLEK2,PLEKHG3,PLEKHH1,PPP1R36,PPP2R5E,RAB15,RAD51B,RDH11,RDH12,SGPP1,SPTB,SYNE2,TMEM229B,VTI1B,WDR89,ZBTB1,ZBTB25,ZFYVE26"
TCGA.F5.6864	14	63962769	107285436	13617	-0.0333	NEUTRAL	NA	292	Too-Many
TCGA.AG.A01W.01A	14	64305449	64311560	7	0.2706	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	64315576	64638726	51	-0.483	NEUTRAL	NA	1	SYNE2
TCGA.CK.5914.01A	14	64375837	64476667	28	0.1689	NEUTRAL	NA	1	SYNE2
TCGA.AA.A00D.01A	14	64408363	64522625	6	0.0753	NEUTRAL	NA	1	SYNE2
TCGA.AA.A00A.01A	14	64416492	64518293	2	-0.3618	NEUTRAL	NA	1	SYNE2
TCGA.CK.5914.01A	14	64483139	64488537	5	-0.3444	NEUTRAL	NA	1	SYNE2
TCGA.AG.3909.01A	14	64491593	64522625	9	-0.503	NEUTRAL	NA	1	SYNE2
TCGA.CK.5914.01A	14	64522625	64568600	18	-0.2872	NEUTRAL	NA	1	SYNE2
TCGA.AG.4009.01A	14	64529432	64628743	37	-0.4973	NEUTRAL	NA	1	SYNE2
TCGA.CK.5914.01A	14	64574191	64636899	26	0.1632	NEUTRAL	NA	1	SYNE2
TCGA.EI.6508	14	64613472	107285436	13521	-0.0301	NEUTRAL	NA	289	Too-Many
TCGA.AA.3861.01A	14	64625978	64924885	63	0.1013	NEUTRAL	NA	4	"ESR2,MTHFD1,SYNE2,ZBTB25"
TCGA.AG.3909.01A	14	64631956	64636899	4	-0.0282	NEUTRAL	NA	1	SYNE2
TCGA.CK.5914.01A	14	64641645	64921423	55	-0.2741	NEUTRAL	NA	4	"ESR2,MTHFD1,SYNE2,ZBTB25"
TCGA.AA.3862.01A	14	64656747	101004277	2265	-0.3736	NEUTRAL	NA	232	Too-Many
TCGA.AG.4009.01A	14	64675429	64892446	35	-0.2779	NEUTRAL	NA	3	"ESR2,MTHFD1,SYNE2"
TCGA.AG.3909.01A	14	64716227	64749315	6	-0.3612	NEUTRAL	NA	1	ESR2
TCGA.AG.3909.01A	14	64855067	64924885	25	0.2206	NEUTRAL	NA	2	"MTHFD1,ZBTB25"
TCGA.AA.A010.01A	14	64896829	64911345	8	-0.1394	NEUTRAL	NA	1	MTHFD1
TCGA.AG.A00C.01A	14	64914886	65220218	38	-0.2366	NEUTRAL	NA	8	"AKAP5,HSPA2,MTHFD1,PLEKHG3,PPP1R36,SPTB,ZBTB1,ZBTB25"
TCGA.AG.4009.01A	14	64988616	65198769	19	-0.4395	NEUTRAL	NA	4	"HSPA2,PLEKHG3,PPP1R36,ZBTB1"
TCGA.AA.3861.01A	14	64990536	93263736	1696	-0.1958	NEUTRAL	NA	168	Too-Many
TCGA.AG.A01W.01A	14	65007501	66717223	38	-0.1061	NEUTRAL	NA	11	"CHURC1,CHURC1-FNTB,FNTB,FUT8,GPX2,HSPA2,MAX,PLEKHG3,PPP1R36,RAB15,SPTB"
TCGA.AA.3509.01A	14	65007521	66028230	93	-0.0749	NEUTRAL	NA	11	"CHURC1,CHURC1-FNTB,FNTB,FUT8,GPX2,HSPA2,MAX,PLEKHG3,PPP1R36,RAB15,SPTB"
TCGA.AZ.4684.01A	14	65007521	66083762	95	-0.0376	NEUTRAL	NA	11	"CHURC1,CHURC1-FNTB,FNTB,FUT8,GPX2,HSPA2,MAX,PLEKHG3,PPP1R36,RAB15,SPTB"
TCGA.AA.A010.01A	14	65017623	65237565	33	-0.0041	NEUTRAL	NA	3	"PLEKHG3,PPP1R36,SPTB"
TCGA.AA.A00N.01A	14	65041146	65220218	21	-0.4737	NEUTRAL	NA	3	"PLEKHG3,PPP1R36,SPTB"
TCGA.AA.A01Q.01A	14	65194349	65268903	43	-0.4193	NEUTRAL	NA	2	"PLEKHG3,SPTB"
TCGA.CK.5914.01A	14	65220218	65268903	28	-0.1275	NEUTRAL	NA	1	SPTB
TCGA.A6.3808.01A	14	65220218	73988928	592	0.3053	NEUTRAL	NA	57	"ACTN1,ADAM20,ADAM21,ARG2,ATP6V1D,C14orf169,CCDC177,CHURC1,CHURC1-FNTB,COX16,DCAF4,DCAF5,DPF3,EIF2S1,ERH,EXD2,FAM71D,FNTB,FUT8,GALNT16,GPHN,GPX2,HEATR4,MAP3K9,MAX,MED6,MPP5,NUMB,PAPLN,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHH1,PSEN1,RAB15,RAD51B,RBM25,RDH11,RDH12,RGS6,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SPTB,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TMEM229B,TTC9,VTI1B,ZFP36L1,ZFYVE1,ZFYVE26"
TCGA.AG.4009.01A	14	65233325	65289613	29	-0.0556	NEUTRAL	NA	1	SPTB
TCGA.AA.A00Q.01A	14	65233978	65270278	27	-0.3751	NEUTRAL	NA	1	SPTB
TCGA.AA.A01Q.01A	14	65270278	67147808	44	0.1869	NEUTRAL	NA	9	"CHURC1,CHURC1-FNTB,FNTB,FUT8,GPHN,GPX2,MAX,RAB15,SPTB"
TCGA.AA.A00Q.01A	14	65271605	67759187	72	0.1146	NEUTRAL	NA	11	"CHURC1,CHURC1-FNTB,FAM71D,FNTB,FUT8,GPHN,GPX2,MAX,MPP5,RAB15,SPTB"
TCGA.AG.4009.01A	14	65381132	67784071	76	-0.3775	NEUTRAL	NA	10	"CHURC1,CHURC1-FNTB,FAM71D,FNTB,FUT8,GPHN,GPX2,MAX,MPP5,RAB15"
TCGA.CK.5914.01A	14	65507469	67790397	71	-0.1747	NEUTRAL	NA	7	"CHURC1-FNTB,FAM71D,FNTB,FUT8,GPHN,MAX,MPP5"
TCGA.AG.A00C.01A	14	65544470	67147808	15	-0.3278	NEUTRAL	NA	3	"FUT8,GPHN,MAX"
TCGA.CK.4948.01B	14	65568939	67490270	29	0.2148	NEUTRAL	NA	3	"FUT8,GPHN,MAX"
TCGA.AA.3941	14	65931657	67564209	337	0.2407	NEUTRAL	NA	2	"FUT8,GPHN"
TCGA.AA.A010.01A	14	66028230	66958741	15	-0.4859	NEUTRAL	NA	1	FUT8
TCGA.AG.3909.01A	14	66199900	67790397	43	0.2005	NEUTRAL	NA	4	"FAM71D,FUT8,GPHN,MPP5"
TCGA.AA.3850	14	66219516	66855986	216	0.09755	NEUTRAL	NA	0	None
TCGA.A6.6649	14	66250231	107285436	13079	-0.1693	NEUTRAL	NA	272	Too-Many
TCGA.F5.6814	14	66755236	67119891	58	-0.3501	NEUTRAL	NA	1	GPHN
TCGA.AG.A01W.01A	14	66815640	66848958	7	-0.114	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	66853247	66879799	9	0.3331	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	14	66882192	70337121	283	-0.355	NEUTRAL	NA	27	"ACTN1,ARG2,ATP6V1D,CCDC177,DCAF5,EIF2S1,ERH,EXD2,FAM71D,GALNT16,GPHN,MPP5,PIGH,PLEK2,PLEKHD1,PLEKHH1,RAD51B,RDH11,RDH12,SLC10A1,SLC39A9,SRSF5,SUSD6,TMEM229B,VTI1B,ZFP36L1,ZFYVE26"
TCGA.AA.A010.01A	14	66964775	67431871	11	0.2405	NEUTRAL	NA	1	GPHN
TCGA.AA.3850	14	67003872	67545887	54	0.01065	NEUTRAL	NA	1	GPHN
TCGA.AG.3726	14	67119891	67667401	67	-0.4638	NEUTRAL	NA	2	"FAM71D,GPHN"
TCGA.F5.6814	14	67120431	107285436	12813	0.0044	NEUTRAL	NA	272	Too-Many
TCGA.AA.3986	14	67235721	73493194	2073	0.0367	NEUTRAL	NA	43	"ACTN1,ADAM20,ADAM21,ARG2,ATP6V1D,CCDC177,COX16,DCAF4,DCAF5,DPF3,EIF2S1,ERH,EXD2,FAM71D,GALNT16,GPHN,MAP3K9,MED6,MPP5,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHH1,RAD51B,RDH11,RDH12,RGS6,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TMEM229B,TTC9,VTI1B,ZFP36L1,ZFYVE1,ZFYVE26"
TCGA.AA.A01Q.01A	14	67431871	67790397	33	0.1779	NEUTRAL	NA	3	"FAM71D,GPHN,MPP5"
TCGA.CK.4948.01B	14	67525319	107282751	2867	-0.0737	NEUTRAL	NA	272	Too-Many
TCGA.DM.A28C	14	67533272	107285436	12780	-0.02	NEUTRAL	NA	272	Too-Many
TCGA.AA.3850	14	67554119	68571583	242	0.27935	NEUTRAL	NA	15	"ARG2,ATP6V1D,EIF2S1,FAM71D,GPHN,MPP5,PIGH,PLEK2,PLEKHH1,RAD51B,RDH11,RDH12,TMEM229B,VTI1B,ZFYVE26"
TCGA.AA.3509.01A	14	67631832	71511823	330	-0.0295	NEUTRAL	NA	38	"ACTN1,ADAM20,ADAM21,ARG2,ATP6V1D,CCDC177,COX16,DCAF5,EIF2S1,ERH,EXD2,FAM71D,GALNT16,GPHN,MAP3K9,MED6,MPP5,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHH1,RAD51B,RDH11,RDH12,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TMEM229B,TTC9,VTI1B,ZFP36L1,ZFYVE26"
TCGA.DM.A28M.01A	14	67631832	92264087	1479	0.1967	NEUTRAL	NA	147	Too-Many
TCGA.AZ.4684.01A	14	67646255	71462411	316	0.0376	NEUTRAL	NA	38	"ACTN1,ADAM20,ADAM21,ARG2,ATP6V1D,CCDC177,COX16,DCAF5,EIF2S1,ERH,EXD2,FAM71D,GALNT16,GPHN,MAP3K9,MED6,MPP5,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHH1,RAD51B,RDH11,RDH12,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TMEM229B,TTC9,VTI1B,ZFP36L1,ZFYVE26"
TCGA.AA.3967.01A	14	67664832	68038421	52	-0.2474	NEUTRAL	NA	7	"ATP6V1D,EIF2S1,FAM71D,MPP5,PLEK2,PLEKHH1,TMEM229B"
TCGA.AG.3726	14	67667509	107285436	12772	-0.0018	NEUTRAL	NA	271	Too-Many
TCGA.AF.2690	14	67668562	73936596	2112	-0.1955	NEUTRAL	NA	46	"ACTN1,ADAM20,ADAM21,ARG2,ATP6V1D,CCDC177,COX16,DCAF4,DCAF5,DPF3,EIF2S1,ERH,EXD2,FAM71D,GALNT16,MAP3K9,MED6,MPP5,NUMB,PAPLN,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHH1,PSEN1,RAD51B,RBM25,RDH11,RDH12,RGS6,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TMEM229B,TTC9,VTI1B,ZFP36L1,ZFYVE1,ZFYVE26"
TCGA.AG.3599	14	67679017	84464364	5604	-0.3391	NEUTRAL	NA	122	Too-Many
TCGA.AA.3529	14	67761854	107285436	12756	-0.0082	NEUTRAL	NA	270	Too-Many
TCGA.AA.A01Q.01A	14	67799450	67819619	9	-0.1739	NEUTRAL	NA	2	"ATP6V1D,MPP5"
TCGA.AA.A00Q.01A	14	67805291	67819619	8	-0.0693	NEUTRAL	NA	1	ATP6V1D
TCGA.AG.3909.01A	14	67826308	68046390	36	0.0946	NEUTRAL	NA	5	"ATP6V1D,EIF2S1,PLEK2,PLEKHH1,TMEM229B"
TCGA.AA.A01Q.01A	14	67826308	73406463	318	0.1923	NEUTRAL	NA	39	"ACTN1,ADAM20,ADAM21,ARG2,ATP6V1D,CCDC177,COX16,DCAF4,DCAF5,DPF3,EIF2S1,ERH,EXD2,GALNT16,MAP3K9,MED6,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHH1,RAD51B,RDH11,RDH12,RGS6,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TMEM229B,TTC9,VTI1B,ZFP36L1,ZFYVE26"
TCGA.CK.5914.01A	14	67841124	67857324	9	-0.1686	NEUTRAL	NA	2	"EIF2S1,PLEK2"
TCGA.AG.4009.01A	14	67847349	68038421	20	-0.3623	NEUTRAL	NA	4	"EIF2S1,PLEK2,PLEKHH1,TMEM229B"
TCGA.AA.A00Q.01A	14	67857324	73445529	319	0.0355	NEUTRAL	NA	38	"ACTN1,ADAM20,ADAM21,ARG2,CCDC177,COX16,DCAF4,DCAF5,DPF3,ERH,EXD2,GALNT16,MAP3K9,MED6,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHH1,RAD51B,RDH11,RDH12,RGS6,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TMEM229B,TTC9,VTI1B,ZFP36L1,ZFYVE1,ZFYVE26"
TCGA.CK.5914.01A	14	68023939	68056754	25	-0.1666	NEUTRAL	NA	2	"PIGH,PLEKHH1"
TCGA.AG.4009.01A	14	68038802	68048735	13	0.1015	NEUTRAL	NA	1	PLEKHH1
TCGA.AA.3967.01A	14	68045834	89082083	1129	-0.3088	NEUTRAL	NA	124	Too-Many
TCGA.AG.4009.01A	14	68050410	69588887	115	-0.2726	NEUTRAL	NA	11	"ACTN1,ARG2,DCAF5,PIGH,PLEKHH1,RAD51B,RDH11,RDH12,VTI1B,ZFP36L1,ZFYVE26"
TCGA.AG.3909.01A	14	68108855	68159604	17	0.0151	NEUTRAL	NA	3	"ARG2,RDH11,VTI1B"
TCGA.CK.5914.01A	14	68108855	68193681	24	-0.1126	NEUTRAL	NA	4	"ARG2,RDH11,RDH12,VTI1B"
TCGA.AG.3909.01A	14	68252556	68282438	15	-0.3431	NEUTRAL	NA	1	ZFYVE26
TCGA.CK.5914.01A	14	68252556	68352539	20	-0.1308	NEUTRAL	NA	2	"RAD51B,ZFYVE26"
TCGA.AA.A00N.01A	14	68252556	69351444	40	-0.0453	NEUTRAL	NA	4	"ACTN1,RAD51B,ZFP36L1,ZFYVE26"
TCGA.AG.3909.01A	14	68290216	68963780	11	0.3587	NEUTRAL	NA	1	RAD51B
TCGA.AA.3561	14	68290371	107285436	12584	-0.408	NEUTRAL	NA	258	Too-Many
TCGA.AA.3941	14	68459776	68571583	9	0.0865	NEUTRAL	NA	1	RAD51B
TCGA.AA.3982	14	68583627	72569992	1327	0.1554	NEUTRAL	NA	26	"ACTN1,ADAM20,ADAM21,CCDC177,COX16,DCAF5,ERH,EXD2,GALNT16,MAP3K9,MED6,PCNX,PLEKHD1,RAD51B,RGS6,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TTC9,ZFP36L1"
TCGA.AA.3850	14	68595834	78764904	3475	0.28425	NEUTRAL	NA	102	Too-Many
TCGA.EI.6512	14	68700096	84447421	5350	0.2094	NEUTRAL	NA	109	Too-Many
TCGA.DC.6681	14	68816932	107285436	12449	-0.0187	NEUTRAL	NA	258	Too-Many
TCGA.EI.7002	14	68851315	107285436	12432	-0.4953	NEUTRAL	NA	258	Too-Many
TCGA.CK.5914.01A	14	68944352	69351444	16	-0.1387	NEUTRAL	NA	3	"ACTN1,RAD51B,ZFP36L1"
TCGA.AG.3581	14	69155626	107281979	12298	-0.0362	NEUTRAL	NA	257	Too-Many
TCGA.AG.3731	14	69167648	107285436	12290	-0.3774	NEUTRAL	NA	257	Too-Many
TCGA.AF.5654	14	69222483	107285436	12217	0.0026	NEUTRAL	NA	257	Too-Many
TCGA.A6.6648	14	69250914	70069671	227	-0.1736	NEUTRAL	NA	9	"ACTN1,CCDC177,DCAF5,ERH,EXD2,GALNT16,PLEKHD1,SLC39A9,ZFP36L1"
TCGA.AG.3909.01A	14	69256202	69351444	14	-0.4207	NEUTRAL	NA	2	"ACTN1,ZFP36L1"
TCGA.AA.A010.01A	14	69541998	69707549	15	-0.392	NEUTRAL	NA	2	"DCAF5,EXD2"
TCGA.AG.4009.01A	14	69791360	69866038	18	0.0414	NEUTRAL	NA	3	"ERH,GALNT16,SLC39A9"
TCGA.AG.4009.01A	14	69890761	70512646	33	-0.3052	NEUTRAL	NA	8	"CCDC177,PLEKHD1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6"
TCGA.AG.3881	14	69949186	103331589	11519	-0.2353	NEUTRAL	NA	207	Too-Many
TCGA.A6.6648	14	70084053	71148690	371	0.1187	NEUTRAL	NA	12	"ADAM20,ADAM21,COX16,MED6,SLC10A1,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TTC9"
TCGA.AG.A00C.01A	14	70234837	70252777	9	-0.1412	NEUTRAL	NA	2	"SLC10A1,SRSF5"
TCGA.AA.A00D.01A	14	70263500	73445529	146	0.2873	NEUTRAL	NA	17	"ADAM20,ADAM21,COX16,DCAF4,DPF3,MAP3K9,MED6,PCNX,RGS6,SIPA1L1,SLC10A1,SLC8A3,SMOC1,SYNJ2BP,SYNJ2BP-COX16,TTC9,ZFYVE1"
TCGA.AA.3558	14	70435507	77225408	2190	0.2214	NEUTRAL	NA	67	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ADAM20,ADAM21,ALDH6A1,AREL1,BATF,C14orf1,C14orf169,CCDC176,COQ6,COX16,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,HEATR4,IFT43,ISCA2,JDP2,LIN52,LTBP2,MAP3K9,MED6,MLH3,NEK9,NPC2,NUMB,PAPLN,PCNX,PGF,PNMA1,PROX2,PSEN1,PTGR2,RBM25,RGS6,RPS6KL1,SIPA1L1,SLC8A3,SMOC1,SYNDIG1L,SYNJ2BP,SYNJ2BP-COX16,TGFB3,TMED10,TTC9,TTLL5,VRTN,VSX2,YLPM1,ZC2HC1C,ZFYVE1,ZNF410"
TCGA.AG.A01W.01A	14	70444295	71261099	56	-0.005	NEUTRAL	NA	10	"ADAM20,ADAM21,COX16,MAP3K9,MED6,SLC8A3,SMOC1,SYNJ2BP,SYNJ2BP-COX16,TTC9"
TCGA.AG.4009.01A	14	70515477	70530498	6	0.1728	NEUTRAL	NA	1	SLC8A3
TCGA.AA.A00N.01A	14	70518687	71134253	27	0.2695	NEUTRAL	NA	8	"ADAM20,ADAM21,COX16,MED6,SLC8A3,SYNJ2BP,SYNJ2BP-COX16,TTC9"
TCGA.AG.3909.01A	14	70518687	73238394	120	0.367	NEUTRAL	NA	13	"ADAM20,ADAM21,COX16,DPF3,MAP3K9,MED6,PCNX,RGS6,SIPA1L1,SLC8A3,SYNJ2BP,SYNJ2BP-COX16,TTC9"
TCGA.AA.A010.01A	14	70522434	72127977	83	0.1925	NEUTRAL	NA	11	"ADAM20,ADAM21,COX16,MAP3K9,MED6,PCNX,SIPA1L1,SLC8A3,SYNJ2BP,SYNJ2BP-COX16,TTC9"
TCGA.AG.4009.01A	14	70633319	71137733	23	-0.3697	NEUTRAL	NA	8	"ADAM20,ADAM21,COX16,MED6,SLC8A3,SYNJ2BP,SYNJ2BP-COX16,TTC9"
TCGA.AA.3846	14	70640390	107285436	11771	-0.3947	NEUTRAL	NA	244	Too-Many
TCGA.CK.5914.01A	14	71108808	73464487	120	0.2957	NEUTRAL	NA	8	"DCAF4,DPF3,MAP3K9,PCNX,RGS6,SIPA1L1,TTC9,ZFYVE1"
TCGA.A6.6648	14	71172012	107285436	11637	0.3084	NEUTRAL	NA	236	Too-Many
TCGA.AG.4009.01A	14	71197050	71227722	10	0.036	NEUTRAL	NA	1	MAP3K9
TCGA.AG.4009.01A	14	71267347	72152040	46	-0.5119	NEUTRAL	NA	3	"MAP3K9,PCNX,SIPA1L1"
TCGA.AA.3866	14	71339185	76957340	1735	0.1432	NEUTRAL	NA	57	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ALDH6A1,AREL1,BATF,C14orf1,C14orf169,CCDC176,COQ6,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,HEATR4,IFT43,ISCA2,JDP2,LIN52,LTBP2,MLH3,NEK9,NPC2,NUMB,PAPLN,PCNX,PGF,PNMA1,PROX2,PSEN1,PTGR2,RBM25,RGS6,RPS6KL1,SIPA1L1,SYNDIG1L,TGFB3,TMED10,TTLL5,VRTN,VSX2,YLPM1,ZC2HC1C,ZFYVE1,ZNF410"
TCGA.AA.3509.01A	14	71517332	73988928	161	-0.0946	NEUTRAL	NA	12	"C14orf169,DCAF4,DPF3,HEATR4,NUMB,PAPLN,PCNX,PSEN1,RBM25,RGS6,SIPA1L1,ZFYVE1"
TCGA.AZ.4684.01A	14	71517332	79423534	744	-7.00E-04	NEUTRAL	NA	80	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ADCK1,AHSA1,ALDH6A1,ALKBH1,ANGEL1,AREL1,BATF,C14orf1,C14orf169,C14orf178,CCDC176,CIPC,COQ6,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,GSTZ1,HEATR4,IFT43,IRF2BPL,ISCA2,ISM2,JDP2,LIN52,LRRC74A,LTBP2,MLH3,NEK9,NGB,NOXRED1,NPC2,NRXN3,NUMB,PAPLN,PCNX,PGF,PNMA1,POMT2,PROX2,PSEN1,PTGR2,RBM25,RGS6,RPS6KL1,SAMD15,SIPA1L1,SLIRP,SNW1,SPTLC2,SYNDIG1L,TGFB3,TMED10,TMED8,TMEM63C,TTLL5,VASH1,VIPAS39,VRTN,VSX2,YLPM1,ZC2HC1C,ZDHHC22,ZFYVE1,ZNF410"
TCGA.AG.4009.01A	14	72165657	73614673	77	-0.1592	NEUTRAL	NA	7	"DCAF4,DPF3,PSEN1,RBM25,RGS6,SIPA1L1,ZFYVE1"
TCGA.AA.3844	14	72438374	72572213	90	-0.0636	NEUTRAL	NA	1	RGS6
TCGA.A6.5661	14	72468404	79026434	2315	-0.4164	NEUTRAL	NA	78	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ADCK1,AHSA1,ALDH6A1,ALKBH1,ANGEL1,AREL1,BATF,C14orf1,C14orf169,C14orf178,CCDC176,CIPC,COQ6,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,GSTZ1,HEATR4,IFT43,IRF2BPL,ISCA2,ISM2,JDP2,LIN52,LRRC74A,LTBP2,MLH3,NEK9,NGB,NOXRED1,NPC2,NRXN3,NUMB,PAPLN,PGF,PNMA1,POMT2,PROX2,PSEN1,PTGR2,RBM25,RGS6,RPS6KL1,SAMD15,SLIRP,SNW1,SPTLC2,SYNDIG1L,TGFB3,TMED10,TMED8,TMEM63C,TTLL5,VASH1,VIPAS39,VRTN,VSX2,YLPM1,ZC2HC1C,ZDHHC22,ZFYVE1,ZNF410"
TCGA.AA.3844	14	72578650	72989639	250	-0.1143	NEUTRAL	NA	1	RGS6
TCGA.AA.3982	14	72579935	78602933	2049	0.2538	NEUTRAL	NA	77	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ADCK1,AHSA1,ALDH6A1,ALKBH1,ANGEL1,AREL1,BATF,C14orf1,C14orf169,C14orf178,CCDC176,CIPC,COQ6,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,GSTZ1,HEATR4,IFT43,IRF2BPL,ISCA2,ISM2,JDP2,LIN52,LRRC74A,LTBP2,MLH3,NEK9,NGB,NOXRED1,NPC2,NUMB,PAPLN,PGF,PNMA1,POMT2,PROX2,PSEN1,PTGR2,RBM25,RGS6,RPS6KL1,SAMD15,SLIRP,SNW1,SPTLC2,SYNDIG1L,TGFB3,TMED10,TMED8,TMEM63C,TTLL5,VASH1,VIPAS39,VRTN,VSX2,YLPM1,ZC2HC1C,ZDHHC22,ZFYVE1,ZNF410"
TCGA.AA.3941	14	72675538	72687806	7	-0.3841	NEUTRAL	NA	1	RGS6
TCGA.G4.6294	14	72726895	107285436	11134	-0.0506	NEUTRAL	NA	233	Too-Many
TCGA.AG.A01W.01A	14	72786406	72859543	30	-0.2378	NEUTRAL	NA	1	RGS6
TCGA.AA.3844	14	72995813	78602933	1807	0.1625	NEUTRAL	NA	77	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ADCK1,AHSA1,ALDH6A1,ALKBH1,ANGEL1,AREL1,BATF,C14orf1,C14orf169,C14orf178,CCDC176,CIPC,COQ6,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,GSTZ1,HEATR4,IFT43,IRF2BPL,ISCA2,ISM2,JDP2,LIN52,LRRC74A,LTBP2,MLH3,NEK9,NGB,NOXRED1,NPC2,NUMB,PAPLN,PGF,PNMA1,POMT2,PROX2,PSEN1,PTGR2,RBM25,RGS6,RPS6KL1,SAMD15,SLIRP,SNW1,SPTLC2,SYNDIG1L,TGFB3,TMED10,TMED8,TMEM63C,TTLL5,VASH1,VIPAS39,VRTN,VSX2,YLPM1,ZC2HC1C,ZDHHC22,ZFYVE1,ZNF410"
TCGA.A6.6653	14	73024298	107285436	10955	-0.0217	NEUTRAL	NA	233	Too-Many
TCGA.AG.A01W.01A	14	73027521	73565572	103	-0.4297	NEUTRAL	NA	5	"DCAF4,DPF3,RBM25,RGS6,ZFYVE1"
TCGA.AA.3831	14	73218823	98490568	8741	0.0034	NEUTRAL	NA	159	Too-Many
TCGA.AG.A00C.01A	14	73360679	76966955	474	-0.497	NEUTRAL	NA	54	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ALDH6A1,AREL1,BATF,C14orf1,C14orf169,CCDC176,COQ6,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,HEATR4,IFT43,ISCA2,JDP2,LIN52,LTBP2,MLH3,NEK9,NPC2,NUMB,PAPLN,PGF,PNMA1,PROX2,PSEN1,PTGR2,RBM25,RPS6KL1,SYNDIG1L,TGFB3,TMED10,TTLL5,VRTN,VSX2,YLPM1,ZC2HC1C,ZFYVE1,ZNF410"
TCGA.AA.A01Q.01A	14	73406876	73422189	8	-0.4745	NEUTRAL	NA	1	DCAF4
TCGA.AA.A01Q.01A	14	73423055	74969885	216	0.0645	NEUTRAL	NA	30	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ALDH6A1,C14orf169,CCDC176,COQ6,DCAF4,DNAL1,ELMSAN1,ENTPD5,FAM161B,HEATR4,ISCA2,LIN52,LTBP2,NPC2,NUMB,PAPLN,PNMA1,PSEN1,PTGR2,RBM25,SYNDIG1L,VRTN,VSX2,ZFYVE1,ZNF410"
TCGA.AG.3909.01A	14	73437549	73578813	25	0.3694	NEUTRAL	NA	2	"RBM25,ZFYVE1"
TCGA.AA.A00N.01A	14	73490742	73578205	15	0.0217	NEUTRAL	NA	2	"RBM25,ZFYVE1"
TCGA.AA.3986	14	73546743	107285436	10734	0.0111	NEUTRAL	NA	229	Too-Many
TCGA.AA.A00N.01A	14	73578813	74036438	69	-0.4795	NEUTRAL	NA	8	"ACOT1,ACOT2,C14orf169,HEATR4,NUMB,PAPLN,PSEN1,RBM25"
TCGA.AG.3909.01A	14	73580956	73822334	43	-0.1331	NEUTRAL	NA	4	"NUMB,PAPLN,PSEN1,RBM25"
TCGA.AA.A00L.01A	14	73586377	73659302	6	-0.3666	NEUTRAL	NA	2	"PSEN1,RBM25"
TCGA.AG.A01W.01A	14	73601053	76036709	299	-0.3422	NEUTRAL	NA	43	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ALDH6A1,AREL1,BATF,C14orf169,CCDC176,COQ6,DLST,DNAL1,EIF2B2,ELMSAN1,ENTPD5,FAM161B,FCF1,FOS,HEATR4,ISCA2,JDP2,LIN52,LTBP2,MLH3,NEK9,NPC2,NUMB,PAPLN,PGF,PNMA1,PROX2,PSEN1,PTGR2,RPS6KL1,SYNDIG1L,TMED10,VRTN,VSX2,YLPM1,ZC2HC1C,ZNF410"
TCGA.AA.A00L.01A	14	73664722	73685805	5	0.2389	NEUTRAL	NA	1	PSEN1
TCGA.AG.4009.01A	14	73678430	73718679	7	-0.5078	NEUTRAL	NA	2	"PAPLN,PSEN1"
TCGA.AA.A00D.01A	14	73685805	73730877	18	0.2613	NEUTRAL	NA	2	"PAPLN,PSEN1"
TCGA.CK.5914.01A	14	73685805	74036438	57	-0.1657	NEUTRAL	NA	7	"ACOT1,ACOT2,C14orf169,HEATR4,NUMB,PAPLN,PSEN1"
TCGA.AA.A00Q.01A	14	73685805	74960765	170	0.0785	NEUTRAL	NA	26	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ALDH6A1,C14orf169,CCDC176,COQ6,DNAL1,ELMSAN1,ENTPD5,FAM161B,HEATR4,ISCA2,LIN52,NPC2,NUMB,PAPLN,PNMA1,PSEN1,PTGR2,SYNDIG1L,VRTN,VSX2,ZNF410"
TCGA.AA.A00A.01A	14	73685805	75247087	214	0.3764	NEUTRAL	NA	30	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ALDH6A1,AREL1,C14orf169,CCDC176,COQ6,DNAL1,ELMSAN1,ENTPD5,FAM161B,FCF1,HEATR4,ISCA2,LIN52,LTBP2,NPC2,NUMB,PAPLN,PNMA1,PSEN1,PTGR2,SYNDIG1L,VRTN,VSX2,YLPM1,ZNF410"
TCGA.AA.A00L.01A	14	73711300	90650404	733	-0.2796	NEUTRAL	NA	91	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ADCK1,AHSA1,ALDH6A1,ALKBH1,ANGEL1,AREL1,BATF,C14orf1,C14orf169,C14orf178,CCDC176,CEP128,CIPC,COQ6,DIO2,DLST,DNAL1,EFCAB11,EIF2B2,ELMSAN1,EML5,ENTPD5,ESRRB,FAM161B,FCF1,FLRT2,FLVCR2,FOS,FOXN3,GALC,GPATCH2L,GPR65,GSTZ1,GTF2A1,HEATR4,IFT43,IRF2BPL,ISCA2,ISM2,JDP2,KCNK10,KCNK13,LIN52,LRRC74A,LTBP2,MLH3,NEK9,NGB,NOXRED1,NPC2,NRXN3,NUMB,PAPLN,PGF,PNMA1,POMT2,PROX2,PTGR2,PTPN21,RPS6KL1,SAMD15,SEL1L,SLIRP,SNW1,SPATA7,SPTLC2,STON2,SYNDIG1L,TDP1,TGFB3,TMED10,TMED8,TMEM63C,TSHR,TTC8,TTLL5,VASH1,VIPAS39,VRTN,VSX2,YLPM1,ZC2HC1C,ZC3H14,ZDHHC22,ZNF410"
TCGA.AG.4009.01A	14	73719340	73822334	26	-0.1669	NEUTRAL	NA	2	"NUMB,PAPLN"
TCGA.AF.A56K	14	73729783	107285436	10660	-0.0944	NEUTRAL	NA	227	Too-Many
TCGA.DM.A1D6	14	73814683	107285436	10674	0.0099	NEUTRAL	NA	226	Too-Many
TCGA.AF.2690	14	73943190	81159294	2432	0.176	NEUTRAL	NA	72	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ADCK1,AHSA1,ALDH6A1,ALKBH1,ANGEL1,AREL1,BATF,C14orf1,C14orf169,C14orf178,CCDC176,CEP128,CIPC,COQ6,DIO2,DLST,DNAL1,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,GSTZ1,HEATR4,IFT43,IRF2BPL,ISCA2,ISM2,JDP2,LIN52,LRRC74A,LTBP2,MLH3,NEK9,NGB,NOXRED1,NPC2,NRXN3,PGF,PNMA1,POMT2,PROX2,PTGR2,RPS6KL1,SAMD15,SLIRP,SNW1,SPTLC2,SYNDIG1L,TGFB3,TMED10,TMED8,TMEM63C,TTLL5,VASH1,VIPAS39,VRTN,VSX2,YLPM1,ZC2HC1C,ZDHHC22,ZNF410"
TCGA.AA.A010.01A	14	73958241	74036438	20	-0.4262	NEUTRAL	NA	4	"ACOT1,ACOT2,C14orf169,HEATR4"
TCGA.AA.3509.01A	14	74009745	79423534	581	-0.1044	NEUTRAL	NA	69	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ADCK1,AHSA1,ALDH6A1,ALKBH1,ANGEL1,AREL1,BATF,C14orf1,C14orf178,CCDC176,CIPC,COQ6,DLST,DNAL1,EIF2B2,ELMSAN1,ENTPD5,ESRRB,FAM161B,FCF1,FLVCR2,FOS,GPATCH2L,GSTZ1,HEATR4,IFT43,IRF2BPL,ISCA2,ISM2,JDP2,LIN52,LRRC74A,LTBP2,MLH3,NEK9,NGB,NOXRED1,NPC2,NRXN3,PGF,PNMA1,POMT2,PROX2,PTGR2,RPS6KL1,SAMD15,SLIRP,SNW1,SPTLC2,SYNDIG1L,TGFB3,TMED10,TMED8,TMEM63C,TTLL5,VASH1,VIPAS39,VRTN,VSX2,YLPM1,ZC2HC1C,ZDHHC22,ZNF410"
TCGA.AA.A010.01A	14	74083787	74205234	22	-0.4607	NEUTRAL	NA	4	"ACOT6,DNAL1,ELMSAN1,PNMA1"
TCGA.AA.A00N.01A	14	74111656	74340679	23	-0.479	NEUTRAL	NA	4	"DNAL1,ELMSAN1,PNMA1,PTGR2"
TCGA.AG.4009.01A	14	74325498	75329239	185	-0.2397	NEUTRAL	NA	19	"ABCD4,ALDH6A1,AREL1,CCDC176,COQ6,ENTPD5,FAM161B,FCF1,ISCA2,LIN52,LTBP2,NPC2,PROX2,PTGR2,SYNDIG1L,VRTN,VSX2,YLPM1,ZNF410"
TCGA.AA.A00N.01A	14	74360468	74727275	74	-0.2703	NEUTRAL	NA	8	"ALDH6A1,CCDC176,COQ6,ENTPD5,FAM161B,LIN52,VSX2,ZNF410"
TCGA.CK.5914.01A	14	74364774	74486133	39	0.16	NEUTRAL	NA	5	"CCDC176,COQ6,ENTPD5,FAM161B,ZNF410"
TCGA.AG.3909.01A	14	74364774	74976745	110	0.0638	NEUTRAL	NA	14	"ABCD4,ALDH6A1,CCDC176,COQ6,ENTPD5,FAM161B,ISCA2,LIN52,LTBP2,NPC2,SYNDIG1L,VRTN,VSX2,ZNF410"
TCGA.AA.A010.01A	14	74436666	74454567	12	-0.1547	NEUTRAL	NA	1	ENTPD5
TCGA.AA.A010.01A	14	74507242	74535516	13	-0.1109	NEUTRAL	NA	2	"ALDH6A1,CCDC176"
TCGA.CK.5914.01A	14	74522250	74976745	69	-0.1468	NEUTRAL	NA	10	"ABCD4,ALDH6A1,CCDC176,ISCA2,LIN52,LTBP2,NPC2,SYNDIG1L,VRTN,VSX2"
TCGA.A6.3808.01A	14	74522250	76088385	227	-0.0207	NEUTRAL	NA	27	"ABCD4,ACYP1,ALDH6A1,AREL1,BATF,CCDC176,DLST,EIF2B2,FCF1,FLVCR2,FOS,ISCA2,JDP2,LIN52,LTBP2,MLH3,NEK9,NPC2,PGF,PROX2,RPS6KL1,SYNDIG1L,TMED10,VRTN,VSX2,YLPM1,ZC2HC1C"
TCGA.AA.A00N.01A	14	74753102	74973850	38	0.2341	NEUTRAL	NA	6	"ABCD4,ISCA2,LTBP2,NPC2,SYNDIG1L,VRTN"
TCGA.AG.A032.01A	14	74766213	107282751	1776	-0.4064	NEUTRAL	NA	207	Too-Many
TCGA.AA.A00Q.01A	14	74961502	75070293	34	-0.2419	NEUTRAL	NA	2	"ISCA2,LTBP2"
TCGA.AA.A00D.01A	14	74967547	75151146	37	0.0777	NEUTRAL	NA	2	"AREL1,LTBP2"
TCGA.AA.A01Q.01A	14	74970174	75078115	30	-0.2646	NEUTRAL	NA	1	LTBP2
TCGA.CK.5914.01A	14	74977898	75348592	66	0.3022	NEUTRAL	NA	5	"AREL1,FCF1,LTBP2,PROX2,YLPM1"
TCGA.AA.A010.01A	14	75070293	75282881	37	0.2578	NEUTRAL	NA	4	"AREL1,FCF1,LTBP2,YLPM1"
TCGA.AA.A00Q.01A	14	75078115	92548602	694	0.1129	NEUTRAL	NA	80	"ACYP1,ADCK1,AHSA1,ALKBH1,ANGEL1,AREL1,ATXN3,BATF,C14orf1,C14orf159,C14orf178,CALM1,CATSPERB,CCDC88C,CEP128,CIPC,DIO2,DLST,EFCAB11,EIF2B2,EML5,ESRRB,FBLN5,FCF1,FLRT2,FLVCR2,FOS,FOXN3,GALC,GPATCH2L,GPR65,GPR68,GSTZ1,GTF2A1,IFT43,IRF2BPL,ISM2,JDP2,KCNK10,KCNK13,LRRC74A,LTBP2,MLH3,NEK9,NGB,NOXRED1,NRDE2,NRXN3,PGF,POMT2,PROX2,PSMC1,PTPN21,RPS6KA5,RPS6KL1,SAMD15,SEL1L,SLIRP,SMEK1,SNW1,SPATA7,SPTLC2,STON2,TC2N,TDP1,TGFB3,TMED10,TMED8,TMEM63C,TRIP11,TSHR,TTC7B,TTC8,TTLL5,VASH1,VIPAS39,YLPM1,ZC2HC1C,ZC3H14,ZDHHC22"
TCGA.AY.6197	14	75121352	95063716	6580	-0.0112	NEUTRAL	NA	112	Too-Many
TCGA.AA.A01Q.01A	14	75130376	75348592	18	0.3138	NEUTRAL	NA	4	"AREL1,FCF1,PROX2,YLPM1"
TCGA.AA.A00A.01A	14	75248010	75348592	5	-0.3148	NEUTRAL	NA	2	"PROX2,YLPM1"
TCGA.AA.A010.01A	14	75283237	75349210	13	-0.3836	NEUTRAL	NA	3	"DLST,PROX2,YLPM1"
TCGA.AA.A01Q.01A	14	75349210	75421807	29	-0.4724	NEUTRAL	NA	3	"DLST,PGF,RPS6KL1"
TCGA.AA.A00A.01A	14	75349210	90756536	514	0.3684	NEUTRAL	NA	63	"ACYP1,ADCK1,AHSA1,ALKBH1,ANGEL1,BATF,C14orf1,C14orf178,CEP128,CIPC,DIO2,DLST,EFCAB11,EIF2B2,EML5,ESRRB,FLRT2,FLVCR2,FOS,FOXN3,GALC,GPATCH2L,GPR65,GSTZ1,GTF2A1,IFT43,IRF2BPL,ISM2,JDP2,KCNK10,KCNK13,LRRC74A,MLH3,NEK9,NGB,NOXRED1,NRDE2,NRXN3,PGF,POMT2,PSMC1,PTPN21,RPS6KL1,SAMD15,SEL1L,SLIRP,SNW1,SPATA7,SPTLC2,STON2,TDP1,TGFB3,TMED10,TMED8,TMEM63C,TSHR,TTC8,TTLL5,VASH1,VIPAS39,ZC2HC1C,ZC3H14,ZDHHC22"
TCGA.AA.A00N.01A	14	75368852	75504989	31	-0.2148	NEUTRAL	NA	5	"DLST,EIF2B2,MLH3,PGF,RPS6KL1"
TCGA.AA.A010.01A	14	75373220	75387933	10	0.2529	NEUTRAL	NA	1	RPS6KL1
TCGA.AG.4009.01A	14	75373220	75643041	63	-0.3226	NEUTRAL	NA	8	"ACYP1,EIF2B2,MLH3,NEK9,PGF,RPS6KL1,TMED10,ZC2HC1C"
TCGA.CK.5914.01A	14	75373674	75509045	32	-0.2713	NEUTRAL	NA	4	"EIF2B2,MLH3,PGF,RPS6KL1"
TCGA.AG.3909.01A	14	75374088	75508284	28	-0.4136	NEUTRAL	NA	4	"EIF2B2,MLH3,PGF,RPS6KL1"
TCGA.AA.A01Q.01A	14	75469666	76219171	87	0.1668	NEUTRAL	NA	12	"ACYP1,BATF,C14orf1,EIF2B2,FLVCR2,FOS,JDP2,MLH3,NEK9,TMED10,TTLL5,ZC2HC1C"
TCGA.AA.A010.01A	14	75469666	77229113	140	0.2588	NEUTRAL	NA	17	"ACYP1,BATF,C14orf1,EIF2B2,ESRRB,FLVCR2,FOS,GPATCH2L,IFT43,JDP2,MLH3,NEK9,TGFB3,TMED10,TTLL5,VASH1,ZC2HC1C"
TCGA.AA.A02F.01A	14	75474380	77928933	223	0.0996	NEUTRAL	NA	31	"ACYP1,AHSA1,ANGEL1,BATF,C14orf1,CIPC,EIF2B2,ESRRB,FLVCR2,FOS,GPATCH2L,GSTZ1,IFT43,IRF2BPL,JDP2,LRRC74A,MLH3,NEK9,NGB,NOXRED1,POMT2,SAMD15,TGFB3,TMED10,TMED8,TMEM63C,TTLL5,VASH1,VIPAS39,ZC2HC1C,ZDHHC22"
TCGA.CK.5914.01A	14	75544154	75576340	14	-0.052	NEUTRAL	NA	2	"NEK9,ZC2HC1C"
TCGA.AG.3909.01A	14	75551225	75580857	16	-0.0315	NEUTRAL	NA	1	NEK9
TCGA.CK.5914.01A	14	75593394	76135712	31	-0.0926	NEUTRAL	NA	8	"BATF,C14orf1,FLVCR2,FOS,JDP2,NEK9,TMED10,TTLL5"
TCGA.AG.3909.01A	14	75614302	75745636	4	-0.1218	NEUTRAL	NA	2	"FOS,TMED10"
TCGA.A6.6780	14	75707331	99150230	8490	-0.0112	NEUTRAL	NA	115	Too-Many
TCGA.AG.4009.01A	14	75904582	76446853	56	-0.375	NEUTRAL	NA	6	"BATF,C14orf1,FLVCR2,JDP2,TGFB3,TTLL5"
TCGA.AG.3909.01A	14	75904582	76966955	84	0.3015	NEUTRAL	NA	9	"BATF,C14orf1,ESRRB,FLVCR2,GPATCH2L,IFT43,JDP2,TGFB3,TTLL5"
TCGA.A6.2679	14	76028679	107285436	10088	-0.0367	NEUTRAL	NA	185	Too-Many
TCGA.AA.A00N.01A	14	76117861	76147843	6	-0.426	NEUTRAL	NA	2	"C14orf1,TTLL5"
TCGA.AG.A01W.01A	14	76298877	76367249	19	-0.199	NEUTRAL	NA	1	TTLL5
TCGA.AG.A01W.01A	14	76402016	76562142	5	0.3377	NEUTRAL	NA	3	"IFT43,TGFB3,TTLL5"
TCGA.AA.A01Q.01A	14	76431891	77319507	52	0.07	NEUTRAL	NA	7	"ANGEL1,ESRRB,GPATCH2L,IFT43,LRRC74A,TGFB3,VASH1"
TCGA.AG.4009.01A	14	76452060	76966955	28	-0.0901	NEUTRAL	NA	3	"ESRRB,GPATCH2L,IFT43"
TCGA.CK.5914.01A	14	76620671	77924472	144	-0.0598	NEUTRAL	NA	17	"AHSA1,ANGEL1,CIPC,ESRRB,GPATCH2L,GSTZ1,IRF2BPL,LRRC74A,NGB,NOXRED1,POMT2,SAMD15,TMED8,TMEM63C,VASH1,VIPAS39,ZDHHC22"
TCGA.AA.3941	14	76638357	76729154	33	0.2092	NEUTRAL	NA	1	GPATCH2L
TCGA.A6.3808.01A	14	76667994	77686293	51	-0.2161	NEUTRAL	NA	9	"ANGEL1,CIPC,ESRRB,GPATCH2L,IRF2BPL,LRRC74A,TMEM63C,VASH1,ZDHHC22"
TCGA.AG.A01W.01A	14	76857172	76980338	37	-0.1932	NEUTRAL	NA	1	ESRRB
TCGA.AA.3866	14	76961616	92491022	5210	-0.2357	NEUTRAL	NA	56	"ADCK1,AHSA1,ALKBH1,ANGEL1,C14orf159,C14orf178,CALM1,CATSPERB,CCDC88C,CEP128,CIPC,DIO2,EFCAB11,EML5,ESRRB,FBLN5,FLRT2,FOXN3,GALC,GPR65,GPR68,GSTZ1,GTF2A1,IRF2BPL,ISM2,KCNK10,KCNK13,LRRC74A,NGB,NOXRED1,NRDE2,NRXN3,POMT2,PSMC1,PTPN21,RPS6KA5,SAMD15,SEL1L,SLIRP,SMEK1,SNW1,SPATA7,SPTLC2,STON2,TC2N,TDP1,TMED8,TMEM63C,TRIP11,TSHR,TTC7B,TTC8,VASH1,VIPAS39,ZC3H14,ZDHHC22"
TCGA.AG.A01W.01A	14	77000637	90770032	394	-0.2861	NEUTRAL	NA	44	"ADCK1,AHSA1,ALKBH1,ANGEL1,C14orf178,CEP128,CIPC,DIO2,EFCAB11,EML5,FLRT2,FOXN3,GALC,GPR65,GSTZ1,GTF2A1,IRF2BPL,ISM2,KCNK10,KCNK13,LRRC74A,NGB,NOXRED1,NRDE2,NRXN3,POMT2,PSMC1,PTPN21,SAMD15,SEL1L,SLIRP,SNW1,SPATA7,SPTLC2,STON2,TDP1,TMED8,TMEM63C,TSHR,TTC8,VASH1,VIPAS39,ZC3H14,ZDHHC22"
TCGA.AA.3558	14	77234763	77637303	157	0.2306	NEUTRAL	NA	6	"ANGEL1,CIPC,IRF2BPL,LRRC74A,VASH1,ZDHHC22"
TCGA.AG.A00C.01A	14	77236260	77294586	16	-0.179	NEUTRAL	NA	3	"ANGEL1,LRRC74A,VASH1"
TCGA.AA.A010.01A	14	77236260	77336380	29	-0.3917	NEUTRAL	NA	3	"ANGEL1,LRRC74A,VASH1"
TCGA.EI.6883	14	77267381	78556037	505	0.0183	NEUTRAL	NA	21	"ADCK1,AHSA1,ALKBH1,ANGEL1,C14orf178,CIPC,GSTZ1,IRF2BPL,ISM2,LRRC74A,NGB,NOXRED1,POMT2,SAMD15,SLIRP,SNW1,SPTLC2,TMED8,TMEM63C,VIPAS39,ZDHHC22"
TCGA.AG.A025.01A	14	77272722	93482974	683	-0.0181	NEUTRAL	NA	63	"ADCK1,AHSA1,ALKBH1,ANGEL1,ATXN3,C14orf159,C14orf178,CALM1,CATSPERB,CCDC88C,CEP128,CHGA,CIPC,CPSF2,DIO2,EFCAB11,EML5,FBLN5,FLRT2,FOXN3,GALC,GOLGA5,GPR65,GPR68,GSTZ1,GTF2A1,IRF2BPL,ISM2,ITPK1,KCNK10,KCNK13,LGMN,LRRC74A,NDUFB1,NGB,NOXRED1,NRDE2,NRXN3,POMT2,PSMC1,PTPN21,RIN3,RPS6KA5,SAMD15,SEL1L,SLC24A4,SLIRP,SMEK1,SNW1,SPATA7,SPTLC2,STON2,TC2N,TDP1,TMED8,TMEM63C,TRIP11,TSHR,TTC7B,TTC8,VIPAS39,ZC3H14,ZDHHC22"
TCGA.AA.A00N.01A	14	77302503	77817968	79	-0.1451	NEUTRAL	NA	9	"CIPC,GSTZ1,IRF2BPL,LRRC74A,NGB,POMT2,TMED8,TMEM63C,ZDHHC22"
TCGA.AG.A00C.01A	14	77336380	77605507	9	-0.1435	NEUTRAL	NA	4	"CIPC,IRF2BPL,LRRC74A,ZDHHC22"
TCGA.A6.2682	14	77460234	107285436	9451	0.0187	NEUTRAL	NA	175	Too-Many
TCGA.AZ.4614	14	77460234	107285436	9527	-0.1194	NEUTRAL	NA	175	Too-Many
TCGA.AA.A01Q.01A	14	77491738	77755051	22	-0.358	NEUTRAL	NA	6	"CIPC,IRF2BPL,NGB,POMT2,TMEM63C,ZDHHC22"
TCGA.AG.3891.01A	14	77572002	77605507	5	-0.0307	NEUTRAL	NA	2	"CIPC,ZDHHC22"
TCGA.AA.3558	14	77637751	77660508	13	-0.2138	NEUTRAL	NA	1	TMEM63C
TCGA.AA.3558	14	77660637	107285436	9531	0.1735	NEUTRAL	NA	172	Too-Many
TCGA.AG.3891.01A	14	77704973	93179094	631	-0.4075	NEUTRAL	NA	55	"ADCK1,AHSA1,ALKBH1,ATXN3,C14orf159,C14orf178,CALM1,CATSPERB,CCDC88C,CEP128,CPSF2,DIO2,EFCAB11,EML5,FBLN5,FLRT2,FOXN3,GALC,GPR65,GPR68,GSTZ1,GTF2A1,ISM2,KCNK10,KCNK13,LGMN,NDUFB1,NGB,NOXRED1,NRDE2,NRXN3,POMT2,PSMC1,PTPN21,RIN3,RPS6KA5,SAMD15,SEL1L,SLC24A4,SLIRP,SMEK1,SNW1,SPATA7,SPTLC2,STON2,TC2N,TDP1,TMED8,TMEM63C,TRIP11,TSHR,TTC7B,TTC8,VIPAS39,ZC3H14"
TCGA.AA.A010.01A	14	77709197	77718083	8	-0.034	NEUTRAL	NA	1	TMEM63C
TCGA.A6.3808.01A	14	77715607	81046641	154	0.2689	NEUTRAL	NA	19	"ADCK1,AHSA1,ALKBH1,C14orf178,CEP128,DIO2,GSTZ1,ISM2,NGB,NOXRED1,NRXN3,POMT2,SAMD15,SLIRP,SNW1,SPTLC2,TMED8,TMEM63C,VIPAS39"
TCGA.AG.A00C.01A	14	77718083	77915587	58	-0.3058	NEUTRAL	NA	8	"GSTZ1,NGB,NOXRED1,POMT2,SAMD15,TMED8,TMEM63C,VIPAS39"
TCGA.AG.3909.01A	14	77732496	77757604	13	-0.2201	NEUTRAL	NA	2	"NGB,POMT2"
TCGA.AA.A010.01A	14	77746673	77908855	50	-0.1409	NEUTRAL	NA	6	"GSTZ1,NOXRED1,POMT2,SAMD15,TMED8,VIPAS39"
TCGA.AA.A01Q.01A	14	77757604	90756536	318	0.1208	NEUTRAL	NA	36	"ADCK1,AHSA1,ALKBH1,C14orf178,CEP128,DIO2,EFCAB11,EML5,FLRT2,FOXN3,GALC,GPR65,GSTZ1,GTF2A1,ISM2,KCNK10,KCNK13,NOXRED1,NRDE2,NRXN3,POMT2,PSMC1,PTPN21,SAMD15,SEL1L,SLIRP,SNW1,SPATA7,SPTLC2,STON2,TDP1,TMED8,TSHR,TTC8,VIPAS39,ZC3H14"
TCGA.AG.3909.01A	14	77772632	77793124	4	-0.2907	NEUTRAL	NA	2	"GSTZ1,POMT2"
TCGA.AG.3909.01A	14	77894663	77987741	34	-0.0393	NEUTRAL	NA	4	"AHSA1,ISM2,SPTLC2,VIPAS39"
TCGA.AA.A00N.01A	14	77895987	78189486	53	0.2736	NEUTRAL	NA	7	"AHSA1,ALKBH1,ISM2,SLIRP,SNW1,SPTLC2,VIPAS39"
TCGA.AG.4009.01A	14	77900128	78197284	52	-0.3984	NEUTRAL	NA	7	"AHSA1,ALKBH1,ISM2,SLIRP,SNW1,SPTLC2,VIPAS39"
TCGA.AA.A010.01A	14	77909382	81662425	124	0.311	NEUTRAL	NA	14	"ADCK1,AHSA1,ALKBH1,C14orf178,CEP128,DIO2,GTF2A1,ISM2,NRXN3,SLIRP,SNW1,SPTLC2,TSHR,VIPAS39"
TCGA.AA.A02F.01A	14	77934409	107282751	1363	0.0471	NEUTRAL	NA	164	Too-Many
TCGA.AG.A023.01A	14	77934724	107282751	1457	-0.1304	NEUTRAL	NA	164	Too-Many
TCGA.CK.5914.01A	14	77935378	78285271	41	-0.1279	NEUTRAL	NA	8	"ADCK1,AHSA1,ALKBH1,C14orf178,ISM2,SLIRP,SNW1,SPTLC2"
TCGA.AA.3979	14	77991259	78184660	66	0.14	NEUTRAL	NA	4	"ALKBH1,SLIRP,SNW1,SPTLC2"
TCGA.AG.3909.01A	14	78177121	78201221	9	0.0332	NEUTRAL	NA	2	"SLIRP,SNW1"
TCGA.AG.A00C.01A	14	78197284	78288723	13	-0.2809	NEUTRAL	NA	3	"ADCK1,C14orf178,SNW1"
TCGA.AG.3909.01A	14	78227327	78288723	5	0.2565	NEUTRAL	NA	3	"ADCK1,C14orf178,SNW1"
TCGA.AG.4009.01A	14	78234700	81651822	68	-0.347	NEUTRAL	NA	7	"ADCK1,C14orf178,CEP128,DIO2,GTF2A1,NRXN3,TSHR"
TCGA.AA.A00D.01A	14	78285271	88651886	102	0.2211	NEUTRAL	NA	12	"ADCK1,CEP128,DIO2,FLRT2,GALC,GPR65,GTF2A1,KCNK10,NRXN3,SEL1L,STON2,TSHR"
TCGA.AA.3844	14	78606823	78766813	79	0.0057	NEUTRAL	NA	0	None
TCGA.AA.3982	14	78614847	78766813	75	0.1137	NEUTRAL	NA	0	None
TCGA.AA.3941	14	78733543	78745405	7	-0.1385	NEUTRAL	NA	0	None
TCGA.AA.3850	14	78766813	81185224	847	-0.47455	NEUTRAL	NA	3	"CEP128,DIO2,NRXN3"
TCGA.AA.3982	14	78768795	78977081	94	-0.302	NEUTRAL	NA	1	NRXN3
TCGA.AA.3844	14	78768795	81416353	906	-0.4179	NEUTRAL	NA	3	"CEP128,DIO2,NRXN3"
TCGA.AA.3941	14	78768795	88560748	3222	-0.1675	NEUTRAL	NA	10	"CEP128,DIO2,FLRT2,GALC,GPR65,GTF2A1,NRXN3,SEL1L,STON2,TSHR"
TCGA.F4.6807	14	78790092	82966969	1346	-0.0102	NEUTRAL	NA	7	"CEP128,DIO2,GTF2A1,NRXN3,SEL1L,STON2,TSHR"
TCGA.AA.3982	14	78987049	88619967	3134	-0.383	NEUTRAL	NA	10	"CEP128,DIO2,FLRT2,GALC,GPR65,GTF2A1,NRXN3,SEL1L,STON2,TSHR"
TCGA.A6.5661	14	79026815	93375879	4710	0.0176	NEUTRAL	NA	40	"ATXN3,C14orf159,CALM1,CATSPERB,CCDC88C,CEP128,CPSF2,DIO2,EFCAB11,EML5,FBLN5,FLRT2,FOXN3,GALC,GOLGA5,GPR65,GPR68,GTF2A1,KCNK10,KCNK13,LGMN,NDUFB1,NRDE2,NRXN3,PSMC1,PTPN21,RIN3,RPS6KA5,SEL1L,SLC24A4,SMEK1,SPATA7,STON2,TC2N,TDP1,TRIP11,TSHR,TTC7B,TTC8,ZC3H14"
TCGA.AA.3509.01A	14	79432331	88904243	121	0.3026	NEUTRAL	NA	12	"CEP128,DIO2,FLRT2,GALC,GPR65,GTF2A1,KCNK10,NRXN3,SEL1L,SPATA7,STON2,TSHR"
TCGA.AZ.4684.01A	14	79432331	89016561	139	0.3702	NEUTRAL	NA	13	"CEP128,DIO2,FLRT2,GALC,GPR65,GTF2A1,KCNK10,NRXN3,PTPN21,SEL1L,SPATA7,STON2,TSHR"
TCGA.EI.6883	14	79618749	80381976	270	-0.0019	NEUTRAL	NA	1	NRXN3
TCGA.AG.3909.01A	14	79746627	88434650	92	0.2736	NEUTRAL	NA	9	"CEP128,DIO2,FLRT2,GALC,GTF2A1,NRXN3,SEL1L,STON2,TSHR"
TCGA.DM.A28H	14	80244113	107285436	8508	-0.0153	NEUTRAL	NA	156	Too-Many
TCGA.EI.6883	14	80545827	81193828	183	0.0235	NEUTRAL	NA	2	"CEP128,DIO2"
TCGA.AZ.4681	14	81141221	89575812	2686	-0.0543	NEUTRAL	NA	14	"CEP128,EML5,FLRT2,GALC,GPR65,GTF2A1,KCNK10,PTPN21,SEL1L,SPATA7,STON2,TSHR,TTC8,ZC3H14"
TCGA.AF.2690	14	81160247	107285436	8224	-0.2465	NEUTRAL	NA	154	Too-Many
TCGA.AA.3850	14	81188772	82395564	371	0.01645	NEUTRAL	NA	5	"CEP128,GTF2A1,SEL1L,STON2,TSHR"
TCGA.AA.3516	14	81230039	95900493	4971	-0.3242	NEUTRAL	NA	70	"ASB2,ATXN3,BTBD7,C14orf142,C14orf159,CALM1,CATSPERB,CCDC88C,CEP128,CHGA,CLMN,COX8C,CPSF2,DDX24,DICER1,EFCAB11,EML5,FAM181A,FBLN5,FLRT2,FOXN3,GALC,GOLGA5,GPR65,GPR68,GSC,GTF2A1,IFI27,IFI27L1,IFI27L2,ITPK1,KCNK10,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,OTUB2,PPP4R4,PRIMA1,PSMC1,PTPN21,RIN3,RPS6KA5,SEL1L,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SLC24A4,SMEK1,SPATA7,STON2,SYNE3,TC2N,TDP1,TMEM251,TRIP11,TSHR,TTC7B,TTC8,UBR7,UNC79,ZC3H14"
TCGA.DM.A28F	14	81270156	107285436	8188	-0.035	NEUTRAL	NA	154	Too-Many
TCGA.CK.5914.01A	14	81372277	81670196	21	0.0434	NEUTRAL	NA	3	"CEP128,GTF2A1,TSHR"
TCGA.AA.3844	14	81420773	82172703	231	-0.1036	NEUTRAL	NA	4	"GTF2A1,SEL1L,STON2,TSHR"
TCGA.A6.3808.01A	14	81646550	93179094	449	0.1237	NEUTRAL	NA	35	"ATXN3,C14orf159,CALM1,CATSPERB,CCDC88C,CPSF2,EFCAB11,EML5,FBLN5,FLRT2,FOXN3,GALC,GPR65,GPR68,GTF2A1,KCNK10,KCNK13,LGMN,NDUFB1,NRDE2,PSMC1,PTPN21,RIN3,RPS6KA5,SEL1L,SLC24A4,SMEK1,SPATA7,STON2,TC2N,TDP1,TRIP11,TTC7B,TTC8,ZC3H14"
TCGA.AG.4009.01A	14	81736901	90798125	208	-0.4457	NEUTRAL	NA	17	"EFCAB11,EML5,FLRT2,FOXN3,GALC,GPR65,KCNK10,KCNK13,NRDE2,PSMC1,PTPN21,SEL1L,SPATA7,STON2,TDP1,TTC8,ZC3H14"
TCGA.CK.5914.01A	14	81943295	86092189	24	-0.1554	NEUTRAL	NA	2	"FLRT2,SEL1L"
TCGA.AA.3844	14	82180303	82384078	74	-0.1503	NEUTRAL	NA	0	None
TCGA.DY.A1DC	14	82870109	83304671	150	0.0282	NEUTRAL	NA	0	None
TCGA.F4.6807	14	82967102	83018769	21	-0.4908	NEUTRAL	NA	0	None
TCGA.F4.6807	14	83022949	107285436	7665	-0.0022	NEUTRAL	NA	149	Too-Many
TCGA.RU.A8FL	14	83170656	86477555	1161	-0.483	NEUTRAL	NA	1	FLRT2
TCGA.DY.A1DC	14	83312833	84996754	555	-5.00E-04	NEUTRAL	NA	0	None
TCGA.CM.5341	14	83337241	107285436	7543	0.0197	NEUTRAL	NA	149	Too-Many
TCGA.G4.6626	14	83467714	107285436	7506	-0.0632	NEUTRAL	NA	149	Too-Many
TCGA.EI.6883	14	83822725	84253908	121	-0.0562	NEUTRAL	NA	0	None
TCGA.AA.3526	14	83879413	107285436	7352	-0.0015	NEUTRAL	NA	149	Too-Many
TCGA.G4.6586	14	84059819	89574192	1748	0.0094	NEUTRAL	NA	9	"EML5,FLRT2,GALC,GPR65,KCNK10,PTPN21,SPATA7,TTC8,ZC3H14"
TCGA.EI.6883	14	84257069	84339970	31	0.0941	NEUTRAL	NA	0	None
TCGA.EI.6883	14	84352957	85391269	305	-0.0419	NEUTRAL	NA	0	None
TCGA.EI.6512	14	84459399	107285436	7159	0.2089	NEUTRAL	NA	149	Too-Many
TCGA.AG.3599	14	84467549	107285436	7154	0.0023	NEUTRAL	NA	149	Too-Many
TCGA.DY.A1DC	14	85016628	85790091	229	-0.0234	NEUTRAL	NA	0	None
TCGA.AA.3956	14	85776035	102691853	6164	-0.4419	NEUTRAL	NA	99	"AK7,ASB2,ATG2B,ATXN3,BCL11B,BDKRB1,BDKRB2,BEGAIN,BTBD7,C14orf132,C14orf142,C14orf159,C14orf177,CALM1,CATSPERB,CCDC85C,CCDC88C,CCNK,CHGA,CLMN,COX8C,CPSF2,CYP46A1,DDX24,DEGS2,DICER1,DIO3,DLK1,DYNC1H1,EFCAB11,EML1,EML5,EVL,FAM181A,FBLN5,FLRT2,FOXN3,GALC,GLRX5,GOLGA5,GPR65,GPR68,GSC,GSKIP,HHIPL1,HSP90AA1,IFI27,IFI27L1,IFI27L2,ITPK1,KCNK10,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,OTUB2,PAPOLA,PPP2R5C,PPP4R4,PRIMA1,PSMC1,PTPN21,RIN3,RPS6KA5,RTL1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SLC24A4,SLC25A29,SLC25A47,SMEK1,SPATA7,SYNE3,TC2N,TCL1A,TCL1B,TDP1,TMEM251,TRIP11,TTC7B,TTC8,UBR7,UNC79,VRK1,WARS,WDR20,WDR25,YY1,ZC3H14"
TCGA.DY.A1DC	14	85874557	105085076	6545	-0.0449	NEUTRAL	NA	127	Too-Many
TCGA.RU.A8FL	14	86478121	107285436	6481	-0.1376	NEUTRAL	NA	148	Too-Many
TCGA.EI.6883	14	86607434	86691434	22	-0.0011	NEUTRAL	NA	0	None
TCGA.EI.6883	14	87022227	87103696	16	-0.0187	NEUTRAL	NA	0	None
TCGA.EI.6883	14	87243662	87307716	22	0.0743	NEUTRAL	NA	0	None
TCGA.AA.3818	14	87612281	107285436	6151	-0.0062	NEUTRAL	NA	148	Too-Many
TCGA.AA.A00N.01A	14	88401055	88904243	39	-0.1662	NEUTRAL	NA	4	"GALC,GPR65,KCNK10,SPATA7"
TCGA.DM.A1HB	14	88428543	107285436	5764	0.0336	NEUTRAL	NA	148	Too-Many
TCGA.AA.3530	14	88433659	107285436	5883	-0.3276	NEUTRAL	NA	148	Too-Many
TCGA.AG.3909.01A	14	88442683	89044302	54	-0.1644	NEUTRAL	NA	6	"GALC,GPR65,KCNK10,PTPN21,SPATA7,ZC3H14"
TCGA.CK.5914.01A	14	88442683	89044302	55	-0.2172	NEUTRAL	NA	6	"GALC,GPR65,KCNK10,PTPN21,SPATA7,ZC3H14"
TCGA.AA.A010.01A	14	88448481	88904243	28	0.2229	NEUTRAL	NA	4	"GALC,GPR65,KCNK10,SPATA7"
TCGA.AA.3811	14	88473177	107285436	5876	-0.1026	NEUTRAL	NA	147	Too-Many
TCGA.AA.3850	14	88560748	93913431	1730	0.32845	NEUTRAL	NA	39	"ATXN3,BTBD7,C14orf142,C14orf159,CALM1,CATSPERB,CCDC88C,CHGA,COX8C,CPSF2,EFCAB11,EML5,FBLN5,FOXN3,GOLGA5,GPR68,ITPK1,KCNK10,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,PSMC1,PTPN21,RIN3,RPS6KA5,SLC24A4,SMEK1,SPATA7,TC2N,TDP1,TMEM251,TRIP11,TTC7B,TTC8,UBR7,UNC79,ZC3H14"
TCGA.AA.3982	14	88620788	98982671	3967	0.1821	NEUTRAL	NA	73	"AK7,ASB2,ATG2B,ATXN3,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf159,CALM1,CATSPERB,CCDC88C,CHGA,CLMN,COX8C,CPSF2,DDX24,DICER1,EFCAB11,EML5,FAM181A,FBLN5,FOXN3,GLRX5,GOLGA5,GPR68,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,ITPK1,KCNK10,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,OTUB2,PAPOLA,PPP4R4,PRIMA1,PSMC1,PTPN21,RIN3,RPS6KA5,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SLC24A4,SMEK1,SPATA7,SYNE3,TC2N,TCL1A,TCL1B,TDP1,TMEM251,TRIP11,TTC7B,TTC8,UBR7,UNC79,VRK1,ZC3H14"
TCGA.AA.3844	14	88626242	97252355	3203	0.1148	NEUTRAL	NA	72	"AK7,ASB2,ATG2B,ATXN3,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf159,CALM1,CATSPERB,CCDC88C,CHGA,CLMN,COX8C,CPSF2,DDX24,DICER1,EFCAB11,EML5,FAM181A,FBLN5,FOXN3,GLRX5,GOLGA5,GPR68,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,ITPK1,KCNK10,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,OTUB2,PAPOLA,PPP4R4,PRIMA1,PSMC1,PTPN21,RIN3,RPS6KA5,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SLC24A4,SMEK1,SPATA7,SYNE3,TC2N,TCL1A,TCL1B,TDP1,TMEM251,TRIP11,TTC7B,TTC8,UBR7,UNC79,ZC3H14"
TCGA.AG.3611.01A	14	88904243	90398821	59	0.0656	NEUTRAL	NA	7	"EFCAB11,EML5,FOXN3,PTPN21,SPATA7,TTC8,ZC3H14"
TCGA.EI.6883	14	88933359	100258443	4491	-0.004	NEUTRAL	NA	78	"AK7,ASB2,ATG2B,ATXN3,BCL11B,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf159,C14orf177,CALM1,CATSPERB,CCDC85C,CCDC88C,CCNK,CHGA,CLMN,COX8C,CPSF2,CYP46A1,DDX24,DICER1,EFCAB11,EML5,FAM181A,FBLN5,FOXN3,GLRX5,GOLGA5,GPR68,GSC,GSKIP,HHIPL1,IFI27,IFI27L1,IFI27L2,ITPK1,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,OTUB2,PAPOLA,PPP4R4,PRIMA1,PSMC1,PTPN21,RIN3,RPS6KA5,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SLC24A4,SMEK1,SYNE3,TC2N,TCL1A,TCL1B,TDP1,TMEM251,TRIP11,TTC7B,TTC8,UBR7,UNC79,VRK1,ZC3H14"
TCGA.AA.3509.01A	14	88934429	93673599	416	-0.0974	NEUTRAL	NA	34	"ATXN3,C14orf142,C14orf159,CALM1,CATSPERB,CCDC88C,CHGA,CPSF2,EFCAB11,EML5,FBLN5,FOXN3,GOLGA5,GPR68,ITPK1,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,PSMC1,PTPN21,RIN3,RPS6KA5,SLC24A4,SMEK1,TC2N,TDP1,TMEM251,TRIP11,TTC7B,TTC8,UBR7,ZC3H14"
TCGA.AA.A00N.01A	14	88963514	89029399	9	-0.2206	NEUTRAL	NA	2	"PTPN21,ZC3H14"
TCGA.AG.A00C.01A	14	89029935	89063018	10	-0.235	NEUTRAL	NA	1	ZC3H14
TCGA.AZ.4684.01A	14	89061093	89647008	67	0.3225	NEUTRAL	NA	4	"EML5,FOXN3,TTC8,ZC3H14"
TCGA.AG.3909.01A	14	89061093	90398821	73	0.3624	NEUTRAL	NA	5	"EFCAB11,EML5,FOXN3,TTC8,ZC3H14"
TCGA.AA.A010.01A	14	89069125	93154223	345	0.1936	NEUTRAL	NA	25	"ATXN3,C14orf159,CALM1,CATSPERB,CCDC88C,CPSF2,EFCAB11,EML5,FBLN5,FOXN3,GPR68,KCNK13,NDUFB1,NRDE2,PSMC1,RIN3,RPS6KA5,SLC24A4,SMEK1,TC2N,TDP1,TRIP11,TTC7B,TTC8,ZC3H14"
TCGA.CK.5914.01A	14	89151337	89154578	3	-0.3674	NEUTRAL	NA	1	EML5
TCGA.CK.5914.01A	14	89160609	89192838	10	0.3299	NEUTRAL	NA	1	EML5
TCGA.AA.A00N.01A	14	89210301	89307717	9	-0.0401	NEUTRAL	NA	2	"EML5,TTC8"
TCGA.AA.3967.01A	14	89291005	105995135	1292	-0.2874	NEUTRAL	NA	141	Too-Many
TCGA.G4.6322	14	89525993	103879186	5198	-0.0343	NEUTRAL	NA	103	Too-Many
TCGA.G4.6586	14	89581570	107285436	5552	-0.0444	NEUTRAL	NA	140	Too-Many
TCGA.AZ.4681	14	89582037	107285436	5537	0.0283	NEUTRAL	NA	140	Too-Many
TCGA.AZ.4684.01A	14	89656661	92258703	182	-0.0449	NEUTRAL	NA	15	"C14orf159,CALM1,CATSPERB,CCDC88C,EFCAB11,FOXN3,GPR68,KCNK13,NRDE2,PSMC1,RPS6KA5,SMEK1,TC2N,TDP1,TTC7B"
TCGA.AA.A00N.01A	14	89816969	90738567	36	-0.4035	NEUTRAL	NA	5	"EFCAB11,FOXN3,KCNK13,PSMC1,TDP1"
TCGA.CK.5914.01A	14	89816969	90863479	53	-0.1611	NEUTRAL	NA	7	"CALM1,EFCAB11,FOXN3,KCNK13,NRDE2,PSMC1,TDP1"
TCGA.AG.3611.01A	14	90416362	90420878	3	-0.5086	NEUTRAL	NA	1	EFCAB11
TCGA.AG.3909.01A	14	90416362	90442056	8	-0.2931	NEUTRAL	NA	2	"EFCAB11,TDP1"
TCGA.AG.3611.01A	14	90429412	101193352	704	0.0159	NEUTRAL	NA	82	"AK7,ASB2,ATG2B,ATXN3,BCL11B,BDKRB1,BDKRB2,BEGAIN,BTBD7,C14orf132,C14orf142,C14orf159,C14orf177,CALM1,CATSPERB,CCDC85C,CCDC88C,CCNK,CHGA,CLMN,COX8C,CPSF2,CYP46A1,DDX24,DEGS2,DICER1,DLK1,EML1,EVL,FAM181A,FBLN5,GLRX5,GOLGA5,GPR68,GSC,GSKIP,HHIPL1,IFI27,IFI27L1,IFI27L2,ITPK1,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,OTUB2,PAPOLA,PPP4R4,PRIMA1,PSMC1,RIN3,RPS6KA5,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SLC24A4,SLC25A29,SLC25A47,SMEK1,SYNE3,TC2N,TCL1A,TCL1B,TDP1,TMEM251,TRIP11,TTC7B,UBR7,UNC79,VRK1,WARS,WDR25,YY1"
TCGA.AG.3909.01A	14	90446834	90650404	11	0.3289	NEUTRAL	NA	2	"KCNK13,TDP1"
TCGA.AA.A00L.01A	14	90722877	90738567	11	0.2672	NEUTRAL	NA	1	PSMC1
TCGA.AG.3909.01A	14	90744630	90798125	16	0.2827	NEUTRAL	NA	1	NRDE2
TCGA.AA.A00N.01A	14	90744630	90863479	17	0.3446	NEUTRAL	NA	2	"CALM1,NRDE2"
TCGA.AA.A00L.01A	14	90744630	92549423	162	-0.218	NEUTRAL	NA	13	"ATXN3,C14orf159,CALM1,CATSPERB,CCDC88C,FBLN5,GPR68,NRDE2,RPS6KA5,SMEK1,TC2N,TRIP11,TTC7B"
TCGA.AA.A00A.01A	14	90758991	90863479	10	-0.1605	NEUTRAL	NA	2	"CALM1,NRDE2"
TCGA.AG.A01W.01A	14	90833356	91542039	95	-0.3463	NEUTRAL	NA	3	"CALM1,RPS6KA5,TTC7B"
TCGA.D5.6536	14	90918434	91589786	204	-0.2949	NEUTRAL	NA	3	"C14orf159,RPS6KA5,TTC7B"
TCGA.CK.5914.01A	14	91007665	91744224	53	0.29	NEUTRAL	NA	5	"C14orf159,CCDC88C,GPR68,RPS6KA5,TTC7B"
TCGA.AG.4009.01A	14	91007665	91757287	55	-0.2619	NEUTRAL	NA	5	"C14orf159,CCDC88C,GPR68,RPS6KA5,TTC7B"
TCGA.AA.A00N.01A	14	91007665	91975802	94	0.2278	NEUTRAL	NA	6	"C14orf159,CCDC88C,GPR68,RPS6KA5,SMEK1,TTC7B"
TCGA.AA.A01Q.01A	14	91044423	92343804	109	0.1923	NEUTRAL	NA	9	"C14orf159,CATSPERB,CCDC88C,FBLN5,GPR68,RPS6KA5,SMEK1,TC2N,TTC7B"
TCGA.AY.6196	14	91267974	107285436	4889	-0.1889	NEUTRAL	NA	133	Too-Many
TCGA.D5.6536	14	91593300	107285436	4869	-0.0366	NEUTRAL	NA	131	Too-Many
TCGA.AG.A01W.01A	14	91667036	92743340	92	-0.2145	NEUTRAL	NA	11	"ATXN3,C14orf159,CATSPERB,CCDC88C,CPSF2,FBLN5,GPR68,NDUFB1,SMEK1,TC2N,TRIP11"
TCGA.AG.4009.01A	14	91760470	91809883	16	0.0996	NEUTRAL	NA	1	CCDC88C
TCGA.AG.A011.01A	14	91781957	107282751	1110	0.0629	NEUTRAL	NA	129	Too-Many
TCGA.AG.3909.01A	14	91806181	91951959	18	0.2646	NEUTRAL	NA	2	"CCDC88C,SMEK1"
TCGA.AG.4009.01A	14	91825922	93151295	138	-0.3136	NEUTRAL	NA	11	"ATXN3,CATSPERB,CCDC88C,CPSF2,FBLN5,NDUFB1,RIN3,SLC24A4,SMEK1,TC2N,TRIP11"
TCGA.CK.5914.01A	14	91883907	93175969	144	0.0814	NEUTRAL	NA	12	"ATXN3,CATSPERB,CCDC88C,CPSF2,FBLN5,LGMN,NDUFB1,RIN3,SLC24A4,SMEK1,TC2N,TRIP11"
TCGA.AG.3909.01A	14	92074591	92279989	31	0.3741	NEUTRAL	NA	2	"CATSPERB,TC2N"
TCGA.A6.2681	14	92248058	107285436	4690	0.1042	NEUTRAL	NA	126	Too-Many
TCGA.AZ.4684.01A	14	92336541	93730094	154	-0.1339	NEUTRAL	NA	16	"ATXN3,BTBD7,C14orf142,CHGA,CPSF2,FBLN5,GOLGA5,ITPK1,LGMN,MOAP1,NDUFB1,RIN3,SLC24A4,TMEM251,TRIP11,UBR7"
TCGA.DM.A28M.01A	14	92336541	94595807	249	0.1342	NEUTRAL	NA	26	"ASB2,ATXN3,BTBD7,C14orf142,CHGA,COX8C,CPSF2,DDX24,FAM181A,FBLN5,GOLGA5,IFI27,IFI27L1,IFI27L2,ITPK1,LGMN,MOAP1,NDUFB1,OTUB2,PRIMA1,RIN3,SLC24A4,TMEM251,TRIP11,UBR7,UNC79"
TCGA.AA.A01Q.01A	14	92347589	92409232	8	-0.3178	NEUTRAL	NA	1	FBLN5
TCGA.AG.A01Y	14	92383998	92389464	6	-0.4717	NEUTRAL	NA	1	FBLN5
TCGA.G4.6321	14	92390619	107285436	4639	-0.0106	NEUTRAL	NA	125	Too-Many
TCGA.AG.3909.01A	14	92403283	92549423	31	0.285	NEUTRAL	NA	3	"ATXN3,FBLN5,TRIP11"
TCGA.AA.A01Q.01A	14	92413477	92627966	50	0.2802	NEUTRAL	NA	5	"ATXN3,CPSF2,FBLN5,NDUFB1,TRIP11"
TCGA.AA.3866	14	92503575	94681173	759	0.1391	NEUTRAL	NA	26	"ASB2,ATXN3,BTBD7,C14orf142,CHGA,COX8C,CPSF2,DDX24,FAM181A,GOLGA5,IFI27,IFI27L1,IFI27L2,ITPK1,LGMN,MOAP1,NDUFB1,OTUB2,PPP4R4,PRIMA1,RIN3,SLC24A4,TMEM251,TRIP11,UBR7,UNC79"
TCGA.AA.A00Q.01A	14	92549423	92627966	23	0.3218	NEUTRAL	NA	3	"ATXN3,CPSF2,NDUFB1"
TCGA.AA.A00L.01A	14	92555028	92625359	20	0.1821	NEUTRAL	NA	3	"ATXN3,CPSF2,NDUFB1"
TCGA.AG.3909.01A	14	92555028	92792193	24	-0.2144	NEUTRAL	NA	4	"ATXN3,CPSF2,NDUFB1,SLC24A4"
TCGA.AA.A00N.01A	14	92608459	93154223	37	0.3635	NEUTRAL	NA	3	"CPSF2,RIN3,SLC24A4"
TCGA.AA.A00D.01A	14	92627406	93142782	28	0.2397	NEUTRAL	NA	3	"CPSF2,RIN3,SLC24A4"
TCGA.AA.A00L.01A	14	92627406	93649510	70	-0.3302	NEUTRAL	NA	8	"CHGA,CPSF2,GOLGA5,ITPK1,LGMN,MOAP1,RIN3,SLC24A4"
TCGA.AG.A01W.01A	14	92778335	93587280	84	-0.1987	NEUTRAL	NA	6	"CHGA,GOLGA5,ITPK1,LGMN,RIN3,SLC24A4"
TCGA.AA.A00Q.01A	14	92790167	93151295	27	-0.2284	NEUTRAL	NA	2	"RIN3,SLC24A4"
TCGA.AA.A01Q.01A	14	92790167	93305653	51	-0.1891	NEUTRAL	NA	4	"GOLGA5,LGMN,RIN3,SLC24A4"
TCGA.AM.5820	14	92967923	93191882	100	0.2742	NEUTRAL	NA	2	"LGMN,RIN3"
TCGA.AG.3909.01A	14	93117917	93723489	65	-0.3496	NEUTRAL	NA	10	"BTBD7,C14orf142,CHGA,GOLGA5,ITPK1,LGMN,MOAP1,RIN3,TMEM251,UBR7"
TCGA.AA.A024.01A	14	93125466	107282751	1013	0.0213	NEUTRAL	NA	119	Too-Many
TCGA.AG.A00C.01A	14	93151295	93686586	49	-0.3341	NEUTRAL	NA	9	"C14orf142,CHGA,GOLGA5,ITPK1,LGMN,MOAP1,RIN3,TMEM251,UBR7"
TCGA.AA.A00Q.01A	14	93170587	94173038	110	0.1935	NEUTRAL	NA	11	"BTBD7,C14orf142,CHGA,COX8C,GOLGA5,ITPK1,LGMN,MOAP1,TMEM251,UBR7,UNC79"
TCGA.AG.3891.01A	14	93180103	93198946	6	0.3387	NEUTRAL	NA	1	LGMN
TCGA.AG.A01N.01A	14	93185041	99865007	368	-0.1399	NEUTRAL	NA	48	"AK7,ASB2,ATG2B,BCL11B,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf177,CHGA,CLMN,COX8C,DDX24,DICER1,FAM181A,GLRX5,GOLGA5,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,ITPK1,LGMN,MOAP1,OTUB2,PAPOLA,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SYNE3,TCL1A,TCL1B,TMEM251,UBR7,UNC79,VRK1"
TCGA.AM.5820	14	93194325	93352943	51	-0.0982	NEUTRAL	NA	2	"GOLGA5,LGMN"
TCGA.AG.4009.01A	14	93198946	99931990	382	-0.3856	NEUTRAL	NA	48	"AK7,ASB2,ATG2B,BCL11B,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf177,CHGA,CLMN,COX8C,DDX24,DICER1,FAM181A,GLRX5,GOLGA5,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,ITPK1,LGMN,MOAP1,OTUB2,PAPOLA,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SYNE3,TCL1A,TCL1B,TMEM251,UBR7,UNC79,VRK1"
TCGA.AG.3891.01A	14	93263736	93649510	28	-0.4186	NEUTRAL	NA	4	"CHGA,GOLGA5,ITPK1,MOAP1"
TCGA.AG.3906.01A	14	93263736	99976467	390	-0.0797	NEUTRAL	NA	48	"AK7,ASB2,ATG2B,BCL11B,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf177,CCNK,CHGA,CLMN,COX8C,DDX24,DICER1,FAM181A,GLRX5,GOLGA5,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,ITPK1,MOAP1,OTUB2,PAPOLA,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SYNE3,TCL1A,TCL1B,TMEM251,UBR7,UNC79,VRK1"
TCGA.CK.5914.01A	14	93282559	93305653	7	0.3456	NEUTRAL	NA	1	GOLGA5
TCGA.AA.3861.01A	14	93301857	100819977	476	-0.2443	NEUTRAL	NA	58	"AK7,ASB2,ATG2B,BCL11B,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf177,CCDC85C,CCNK,CHGA,CLMN,COX8C,CYP46A1,DDX24,DEGS2,DICER1,EML1,EVL,FAM181A,GLRX5,GOLGA5,GSC,GSKIP,HHIPL1,IFI27,IFI27L1,IFI27L2,ITPK1,MOAP1,OTUB2,PAPOLA,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,TMEM251,UBR7,UNC79,VRK1,WARS,YY1"
TCGA.A6.5661	14	93376703	107285436	4215	-0.4974	NEUTRAL	NA	116	Too-Many
TCGA.AY.A71X	14	93400878	93494499	26	-0.4681	NEUTRAL	NA	2	"CHGA,ITPK1"
TCGA.AA.3875	14	93407770	93761912	87	0.1732	NEUTRAL	NA	6	"BTBD7,C14orf142,ITPK1,MOAP1,TMEM251,UBR7"
TCGA.AY.A71X	14	93505959	107285436	4195	-0.0906	NEUTRAL	NA	115	Too-Many
TCGA.AA.A01Q.01A	14	93581360	94187743	72	0.1616	NEUTRAL	NA	9	"BTBD7,C14orf142,COX8C,ITPK1,MOAP1,PRIMA1,TMEM251,UBR7,UNC79"
TCGA.AM.5820	14	93588130	94171858	111	-0.0964	NEUTRAL	NA	7	"BTBD7,C14orf142,COX8C,MOAP1,TMEM251,UBR7,UNC79"
TCGA.AG.A01W.01A	14	93615084	93845845	47	-0.1195	NEUTRAL	NA	7	"BTBD7,C14orf142,COX8C,MOAP1,TMEM251,UBR7,UNC79"
TCGA.AG.3891.01A	14	93651694	93686586	11	0.016	NEUTRAL	NA	3	"C14orf142,TMEM251,UBR7"
TCGA.AA.A010.01A	14	93673137	99880146	358	0.2406	NEUTRAL	NA	42	"AK7,ASB2,ATG2B,BCL11B,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf177,CLMN,COX8C,DDX24,DICER1,FAM181A,GLRX5,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,OTUB2,PAPOLA,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SYNE3,TCL1A,TCL1B,UBR7,UNC79,VRK1"
TCGA.AG.3891.01A	14	93688588	95934111	219	-0.5069	NEUTRAL	NA	27	"ASB2,BTBD7,CLMN,COX8C,DDX24,DICER1,FAM181A,GSC,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,UBR7,UNC79"
TCGA.AG.A025.01A	14	93693234	107282751	942	-0.1489	NEUTRAL	NA	111	Too-Many
TCGA.AA.3509.01A	14	93708587	94642328	105	0.0525	NEUTRAL	NA	12	"ASB2,BTBD7,COX8C,DDX24,FAM181A,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,UNC79"
TCGA.CK.5914.01A	14	93708587	96829114	279	0.2246	NEUTRAL	NA	33	"ASB2,ATG2B,BDKRB1,BDKRB2,BTBD7,C14orf132,CLMN,COX8C,DDX24,DICER1,FAM181A,GLRX5,GSC,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,TCL1A,TCL1B,UNC79"
TCGA.AA.A00L.01A	14	93708587	96909024	266	-0.2559	NEUTRAL	NA	35	"AK7,ASB2,ATG2B,BDKRB1,BDKRB2,BTBD7,C14orf132,CLMN,COX8C,DDX24,DICER1,FAM181A,GLRX5,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,TCL1A,TCL1B,UNC79"
TCGA.AA.A00D.01A	14	93714774	95905319	202	0.3585	NEUTRAL	NA	26	"ASB2,BTBD7,CLMN,COX8C,DDX24,DICER1,FAM181A,GSC,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,UNC79"
TCGA.AA.3875	14	93762161	107285436	4140	-0.1825	NEUTRAL	NA	110	Too-Many
TCGA.AG.A01W.01A	14	93850075	94981979	83	-0.4654	NEUTRAL	NA	17	"ASB2,DDX24,FAM181A,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA6,SERPINA9,UNC79"
TCGA.AA.3850	14	93923415	94160520	41	-0.19745	NEUTRAL	NA	1	UNC79
TCGA.AA.3870	14	94014016	94096936	17	-0.4587	NEUTRAL	NA	1	UNC79
TCGA.AA.3870	14	94099541	107285436	4084	0.0444	NEUTRAL	NA	108	Too-Many
TCGA.AZ.4684.01A	14	94139650	94642328	55	-0.0345	NEUTRAL	NA	10	"ASB2,DDX24,FAM181A,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,UNC79"
TCGA.AM.5820	14	94174317	94279140	40	0.3151	NEUTRAL	NA	1	PRIMA1
TCGA.AA.A00Q.01A	14	94187743	94640751	44	-0.1238	NEUTRAL	NA	9	"ASB2,DDX24,FAM181A,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1"
TCGA.AG.3909.01A	14	94187743	94708579	54	-0.0527	NEUTRAL	NA	9	"ASB2,DDX24,FAM181A,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1"
TCGA.AA.A00N.01A	14	94203539	94545341	31	-0.2069	NEUTRAL	NA	5	"ASB2,DDX24,FAM181A,OTUB2,PRIMA1"
TCGA.AM.5820	14	94284202	94295087	10	-0.3445	NEUTRAL	NA	0	None
TCGA.AM.5820	14	94295458	97643736	1558	0.1877	NEUTRAL	NA	33	"AK7,ASB2,ATG2B,BDKRB1,BDKRB2,C14orf132,CLMN,DDX24,DICER1,FAM181A,GLRX5,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,OTUB2,PAPOLA,PPP4R4,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,TCL1A,TCL1B,VRK1"
TCGA.AA.A01Q.01A	14	94519324	99931990	246	-0.0055	NEUTRAL	NA	33	"AK7,ATG2B,BCL11B,BDKRB1,BDKRB2,C14orf132,C14orf177,CLMN,DDX24,DICER1,GLRX5,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,PAPOLA,PPP4R4,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SYNE3,TCL1A,TCL1B,VRK1"
TCGA.AA.A00Q.01A	14	94642328	95905319	105	0.1426	NEUTRAL	NA	15	"CLMN,DICER1,GSC,PPP4R4,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3"
TCGA.AA.3941	14	94653927	94712433	13	-0.4452	NEUTRAL	NA	1	PPP4R4
TCGA.AA.3866	14	94690164	103361735	3331	-0.1334	NEUTRAL	NA	56	"AK7,ANKRD9,ATG2B,BCL11B,BDKRB1,BDKRB2,BEGAIN,C14orf132,C14orf177,CCDC85C,CCNK,CINP,CLMN,CYP46A1,DEGS2,DICER1,DIO3,DLK1,DYNC1H1,EML1,EVL,GLRX5,GSC,GSKIP,HHIPL1,HSP90AA1,MOK,PAPOLA,PPP2R5C,PPP4R4,RCOR1,RTL1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SETD3,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,TECPR2,TRAF3,VRK1,WARS,WDR20,WDR25,YY1,ZNF839"
TCGA.AG.3909.01A	14	94710913	94772357	20	0.2538	NEUTRAL	NA	3	"PPP4R4,SERPINA10,SERPINA6"
TCGA.AA.3850	14	94712433	97244454	1210	0.30605	NEUTRAL	NA	25	"AK7,ATG2B,BDKRB1,BDKRB2,C14orf132,CLMN,DICER1,GLRX5,GSC,GSKIP,PAPOLA,PPP4R4,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,TCL1A,TCL1B"
TCGA.AA.3509.01A	14	94744922	95657854	66	0.0359	NEUTRAL	NA	14	"CLMN,DICER1,GSC,PPP4R4,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9"
TCGA.AZ.4684.01A	14	94744922	96781460	132	0.0894	NEUTRAL	NA	22	"ATG2B,BDKRB1,BDKRB2,C14orf132,CLMN,DICER1,GLRX5,GSC,PPP4R4,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,TCL1A,TCL1B"
TCGA.DM.A28M.01A	14	94754571	96795770	139	0.1222	NEUTRAL	NA	21	"ATG2B,BDKRB1,BDKRB2,C14orf132,CLMN,DICER1,GLRX5,GSC,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,TCL1A,TCL1B"
TCGA.AY.6197	14	95073430	107285436	3546	-0.0321	NEUTRAL	NA	89	"ADSSL1,AHNAK2,AK7,AKT1,AMN,ANKRD9,APOPT1,ASPG,ATG2B,BAG5,BCL11B,BDKRB1,BDKRB2,BEGAIN,BRF1,BTBD6,C14orf132,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CLMN,CRIP1,CRIP2,CYP46A1,DEGS2,DICER1,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GLRX5,GPR132,GSC,GSKIP,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PAPOLA,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SERPINA3,SETD3,SIVA1,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.F4.6570	14	95073430	107285436	3623	-0.0491	NEUTRAL	NA	89	"ADSSL1,AHNAK2,AK7,AKT1,AMN,ANKRD9,APOPT1,ASPG,ATG2B,BAG5,BCL11B,BDKRB1,BDKRB2,BEGAIN,BRF1,BTBD6,C14orf132,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CLMN,CRIP1,CRIP2,CYP46A1,DEGS2,DICER1,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GLRX5,GPR132,GSC,GSKIP,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PAPOLA,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SERPINA3,SETD3,SIVA1,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.G5.6235	14	95073430	107285436	3621	-0.2854	NEUTRAL	NA	89	"ADSSL1,AHNAK2,AK7,AKT1,AMN,ANKRD9,APOPT1,ASPG,ATG2B,BAG5,BCL11B,BDKRB1,BDKRB2,BEGAIN,BRF1,BTBD6,C14orf132,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CLMN,CRIP1,CRIP2,CYP46A1,DEGS2,DICER1,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GLRX5,GPR132,GSC,GSKIP,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PAPOLA,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SERPINA3,SETD3,SIVA1,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.A6.3808.01A	14	95078653	101335355	313	-0.0229	NEUTRAL	NA	33	"AK7,ATG2B,BCL11B,BDKRB1,BDKRB2,BEGAIN,C14orf132,C14orf177,CCDC85C,CCNK,CLMN,CYP46A1,DEGS2,DICER1,DLK1,EML1,EVL,GLRX5,GSC,GSKIP,HHIPL1,PAPOLA,SERPINA3,SETD3,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,VRK1,WARS,WDR25,YY1"
TCGA.AG.3909.01A	14	95088638	96829114	112	0.231	NEUTRAL	NA	12	"ATG2B,BDKRB1,BDKRB2,C14orf132,CLMN,DICER1,GLRX5,GSC,SERPINA3,SYNE3,TCL1A,TCL1B"
TCGA.AG.3594	14	95095620	107285436	3606	-0.0267	NEUTRAL	NA	88	"ADSSL1,AHNAK2,AK7,AKT1,AMN,ANKRD9,APOPT1,ASPG,ATG2B,BAG5,BCL11B,BDKRB1,BDKRB2,BEGAIN,BRF1,BTBD6,C14orf132,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CLMN,CRIP1,CRIP2,CYP46A1,DEGS2,DICER1,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GLRX5,GPR132,GSC,GSKIP,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PAPOLA,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.A01W.01A	14	95222507	100065861	222	-0.2648	NEUTRAL	NA	20	"AK7,ATG2B,BCL11B,BDKRB1,BDKRB2,C14orf132,C14orf177,CCDC85C,CCNK,CLMN,DICER1,GLRX5,GSC,GSKIP,PAPOLA,SETD3,SYNE3,TCL1A,TCL1B,VRK1"
TCGA.CI.6622	14	95480923	107285436	3383	-0.0258	NEUTRAL	NA	87	"ADSSL1,AHNAK2,AK7,AKT1,AMN,ANKRD9,APOPT1,ASPG,ATG2B,BAG5,BCL11B,BDKRB1,BDKRB2,BEGAIN,BRF1,BTBD6,C14orf132,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CLMN,CRIP1,CRIP2,CYP46A1,DEGS2,DICER1,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GLRX5,GPR132,GSKIP,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PAPOLA,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3509.01A	14	95884121	96781460	54	0.0224	NEUTRAL	NA	8	"ATG2B,BDKRB1,BDKRB2,C14orf132,GLRX5,SYNE3,TCL1A,TCL1B"
TCGA.AA.A00D.01A	14	95905992	95941963	11	-0.0678	NEUTRAL	NA	1	SYNE3
TCGA.AA.A00Q.01A	14	95905992	95941963	11	-0.3624	NEUTRAL	NA	1	SYNE3
TCGA.AA.3516	14	95907062	107285436	3219	-0.2565	NEUTRAL	NA	85	"ADSSL1,AHNAK2,AK7,AKT1,AMN,ANKRD9,APOPT1,ASPG,ATG2B,BAG5,BCL11B,BDKRB1,BDKRB2,BEGAIN,BRF1,BTBD6,C14orf132,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GLRX5,GPR132,GSKIP,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PAPOLA,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,SYNE3,TCL1A,TCL1B,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.A00A.01A	14	95912199	96010237	9	-0.1308	NEUTRAL	NA	2	"GLRX5,SYNE3"
TCGA.AG.3891.01A	14	95941963	96152753	10	0.0099	NEUTRAL	NA	3	"GLRX5,SYNE3,TCL1B"
TCGA.AA.A00N.01A	14	96001385	96180291	15	-0.511	NEUTRAL	NA	3	"GLRX5,TCL1A,TCL1B"
TCGA.AA.A00Q.01A	14	96010237	102360771	251	0.1196	NEUTRAL	NA	31	"AK7,ATG2B,BCL11B,BDKRB1,BDKRB2,BEGAIN,C14orf132,C14orf177,CCDC85C,CCNK,CYP46A1,DEGS2,DIO3,DLK1,EML1,EVL,GLRX5,GSKIP,HHIPL1,PAPOLA,PPP2R5C,RTL1,SETD3,SLC25A29,SLC25A47,TCL1A,TCL1B,VRK1,WARS,WDR25,YY1"
TCGA.AG.3891.01A	14	96157055	96875135	54	-0.4794	NEUTRAL	NA	8	"AK7,ATG2B,BDKRB1,BDKRB2,C14orf132,GSKIP,TCL1A,TCL1B"
TCGA.AA.3941	14	96766879	96852070	12	-0.0348	NEUTRAL	NA	2	"ATG2B,GSKIP"
TCGA.AG.A00C.01A	14	96794979	96986375	33	-0.3764	NEUTRAL	NA	4	"AK7,ATG2B,GSKIP,PAPOLA"
TCGA.AA.A00N.01A	14	96807812	96829114	6	-0.1287	NEUTRAL	NA	1	ATG2B
TCGA.DM.A28M.01A	14	96810950	96991607	28	0.0836	NEUTRAL	NA	4	"AK7,ATG2B,GSKIP,PAPOLA"
TCGA.AA.3509.01A	14	96848603	97000773	29	-0.3687	NEUTRAL	NA	3	"AK7,GSKIP,PAPOLA"
TCGA.AZ.4684.01A	14	96858452	97000773	27	-0.3269	NEUTRAL	NA	2	"AK7,PAPOLA"
TCGA.AG.3891.01A	14	96887137	96938968	10	0.089	NEUTRAL	NA	1	AK7
TCGA.CK.5914.01A	14	96904139	96994230	19	0.0434	NEUTRAL	NA	2	"AK7,PAPOLA"
TCGA.AG.3909.01A	14	96904139	99931990	63	0.2503	NEUTRAL	NA	6	"AK7,BCL11B,C14orf177,PAPOLA,SETD3,VRK1"
TCGA.AA.A00N.01A	14	96909024	96997765	19	0.0374	NEUTRAL	NA	2	"AK7,PAPOLA"
TCGA.AA.A00L.01A	14	96912812	96991607	15	0.1689	NEUTRAL	NA	2	"AK7,PAPOLA"
TCGA.AG.3891.01A	14	96944762	100615268	117	-0.4537	NEUTRAL	NA	13	"AK7,BCL11B,C14orf177,CCDC85C,CCNK,CYP46A1,DEGS2,EML1,EVL,HHIPL1,PAPOLA,SETD3,VRK1"
TCGA.AA.A00L.01A	14	96993730	101004277	134	-0.1771	NEUTRAL	NA	18	"BCL11B,BEGAIN,C14orf177,CCDC85C,CCNK,CYP46A1,DEGS2,EML1,EVL,HHIPL1,PAPOLA,SETD3,SLC25A29,SLC25A47,VRK1,WARS,WDR25,YY1"
TCGA.F4.6854	14	97239215	107285436	2628	-0.0376	NEUTRAL	NA	74	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3850	14	97244597	99137466	869	0.00095	NEUTRAL	NA	1	VRK1
TCGA.AA.3844	14	97255289	99328625	982	-0.2018	NEUTRAL	NA	2	"C14orf177,VRK1"
TCGA.AA.3941	14	97255678	98982671	764	0.3267	NEUTRAL	NA	1	VRK1
TCGA.AA.3509.01A	14	97342339	107282751	888	-0.2209	NEUTRAL	NA	74	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.DM.A28M.01A	14	97411334	107282751	888	0.1136	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AM.5820	14	97907194	101375424	1420	0.1696	NEUTRAL	NA	18	"BCL11B,BEGAIN,C14orf177,CCDC85C,CCNK,CYP46A1,DEGS2,DLK1,EML1,EVL,HHIPL1,RTL1,SETD3,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.D5.6539	14	98028427	107285436	2326	-0.0645	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.A6.2677	14	98127723	107285436	2171	-0.0522	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3864	14	98217463	107285436	2247	0.1237	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3989	14	98217463	107285436	2251	-0.2281	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.G4.6302	14	98242942	107285436	2230	-0.029	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3681	14	98495274	107285436	2124	0.0298	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3831	14	98495274	107285436	2124	0.0132	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3982	14	98985567	99029311	30	-0.3574	NEUTRAL	NA	0	None
TCGA.AA.3941	14	98987471	99012061	18	0.1265	NEUTRAL	NA	0	None
TCGA.AA.3982	14	99038426	99550193	330	0.1428	NEUTRAL	NA	1	C14orf177
TCGA.AA.3850	14	99137634	107285436	1755	0.34595	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.A6.6780	14	99150917	107285436	1744	0.0298	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.CK.5914.01A	14	99183382	99929793	17	0.1025	NEUTRAL	NA	3	"BCL11B,C14orf177,SETD3"
TCGA.AZ.4684.01A	14	99183382	107282751	883	-0.1482	NEUTRAL	NA	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3696	14	99190094	99662500	294	-0.1314	NEUTRAL	NA	1	BCL11B
TCGA.AG.3902	14	99326915	107285436	1639	0.0342	NEUTRAL	NA	72	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3844	14	99329867	101385354	689	0.1899	NEUTRAL	NA	17	"BCL11B,BEGAIN,CCDC85C,CCNK,CYP46A1,DEGS2,DLK1,EML1,EVL,HHIPL1,RTL1,SETD3,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AA.3977	14	99554643	107285436	1482	0.1835	NEUTRAL	NA	72	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3982	14	99560184	101385354	536	0.3137	NEUTRAL	NA	17	"BCL11B,BEGAIN,CCDC85C,CCNK,CYP46A1,DEGS2,DLK1,EML1,EVL,HHIPL1,RTL1,SETD3,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AA.A00N.01A	14	99640457	99880146	12	0.1797	NEUTRAL	NA	2	"BCL11B,SETD3"
TCGA.AA.3696	14	99667686	107285436	1426	-0.0376	NEUTRAL	NA	72	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.A01N.01A	14	99866385	107282751	587	-0.4074	NEUTRAL	NA	71	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BEGAIN,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.A00C.01A	14	99925420	100191673	29	-0.3232	NEUTRAL	NA	5	"CCDC85C,CCNK,CYP46A1,HHIPL1,SETD3"
TCGA.AA.A010.01A	14	99976467	100118523	9	0.0071	NEUTRAL	NA	3	"CCDC85C,CCNK,HHIPL1"
TCGA.AA.A00N.01A	14	99976467	100406283	51	-0.3809	NEUTRAL	NA	5	"CCDC85C,CCNK,CYP46A1,EML1,HHIPL1"
TCGA.CK.5914.01A	14	99976467	102322981	159	-0.3898	NEUTRAL	NA	17	"BEGAIN,CCDC85C,CCNK,CYP46A1,DEGS2,DIO3,DLK1,EML1,EVL,HHIPL1,PPP2R5C,RTL1,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AG.3909.01A	14	100134502	100405497	34	-0.235	NEUTRAL	NA	3	"CYP46A1,EML1,HHIPL1"
TCGA.AG.3906.01A	14	100165743	100613059	44	-0.0935	NEUTRAL	NA	4	"CYP46A1,DEGS2,EML1,EVL"
TCGA.AA.A01Q.01A	14	100166308	100728609	50	-0.0947	NEUTRAL	NA	5	"CYP46A1,DEGS2,EML1,EVL,YY1"
TCGA.AA.A010.01A	14	100192463	100625785	41	0.1817	NEUTRAL	NA	4	"CYP46A1,DEGS2,EML1,EVL"
TCGA.AG.4009.01A	14	100317142	100705575	37	-0.2927	NEUTRAL	NA	4	"DEGS2,EML1,EVL,YY1"
TCGA.AG.A01W.01A	14	100388430	100561601	13	-0.3891	NEUTRAL	NA	2	"EML1,EVL"
TCGA.AG.A01W.01A	14	100576169	101530226	50	-0.2958	NEUTRAL	NA	10	"BEGAIN,DEGS2,DLK1,EVL,RTL1,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AG.3909.01A	14	100598988	102449738	103	-0.2425	NEUTRAL	NA	13	"BEGAIN,DEGS2,DIO3,DLK1,DYNC1H1,EVL,PPP2R5C,RTL1,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AG.3891.01A	14	100705575	101011270	31	-0.0094	NEUTRAL	NA	6	"BEGAIN,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AG.A00C.01A	14	100728609	101198341	31	-0.1434	NEUTRAL	NA	7	"BEGAIN,DLK1,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AA.A01Q.01A	14	100741014	102378688	89	-0.4828	NEUTRAL	NA	10	"BEGAIN,DIO3,DLK1,PPP2R5C,RTL1,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AG.4009.01A	14	100826843	100950284	6	-0.3738	NEUTRAL	NA	2	"WARS,WDR25"
TCGA.AG.3906.01A	14	100835384	101533020	51	-0.183	NEUTRAL	NA	5	"BEGAIN,DLK1,RTL1,WARS,WDR25"
TCGA.AA.A00A.01A	14	100995358	101507645	30	0.0205	NEUTRAL	NA	4	"BEGAIN,DLK1,RTL1,WDR25"
TCGA.AG.3611.01A	14	101194665	101522490	36	-0.2826	NEUTRAL	NA	2	"DLK1,RTL1"
TCGA.AG.3891.01A	14	101194665	101533020	44	-0.4852	NEUTRAL	NA	2	"DLK1,RTL1"
TCGA.AM.5820	14	101383167	101464983	17	-0.2292	NEUTRAL	NA	0	None
TCGA.AA.3941	14	101395705	101464983	14	-0.3497	NEUTRAL	NA	0	None
TCGA.AA.3982	14	101429567	101464983	9	-0.3184	NEUTRAL	NA	0	None
TCGA.AA.3982	14	101467521	101603434	73	0.3201	NEUTRAL	NA	0	None
TCGA.AA.3844	14	101467521	106000230	853	0.2272	NEUTRAL	NA	55	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.4009.01A	14	101489611	102384131	44	-0.309	NEUTRAL	NA	2	"DIO3,PPP2R5C"
TCGA.AA.A00L.01A	14	101493094	102504805	86	0.05	NEUTRAL	NA	3	"DIO3,DYNC1H1,PPP2R5C"
TCGA.AG.A00C.01A	14	101509270	102457817	43	-0.4401	NEUTRAL	NA	3	"DIO3,DYNC1H1,PPP2R5C"
TCGA.AA.A010.01A	14	101512736	101526894	12	0.1393	NEUTRAL	NA	0	None
TCGA.AG.3611.01A	14	101526037	107178790	358	0.0925	NEUTRAL	NA	55	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.A01W.01A	14	101544237	101558790	13	-0.2496	NEUTRAL	NA	0	None
TCGA.AD.6965	14	101567723	107285436	880	0.0778	NEUTRAL	NA	55	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.A01W.01A	14	101576276	101769741	31	0.0663	NEUTRAL	NA	0	None
TCGA.AA.3982	14	101607350	101628377	6	-0.3788	NEUTRAL	NA	0	None
TCGA.AA.3982	14	101629470	101698464	37	0.2522	NEUTRAL	NA	0	None
TCGA.AM.5820	14	101679254	101685439	10	-0.1365	NEUTRAL	NA	0	None
TCGA.AA.3982	14	101718024	101762040	22	0.2246	NEUTRAL	NA	0	None
TCGA.AM.5820	14	101720668	101911710	66	0.1233	NEUTRAL	NA	0	None
TCGA.AA.3982	14	101787428	106008644	705	0.367	NEUTRAL	NA	55	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.A01W.01A	14	101891808	102433320	40	-0.3724	NEUTRAL	NA	3	"DIO3,DYNC1H1,PPP2R5C"
TCGA.AA.3862.01A	14	102026586	104165674	252	-0.0154	NEUTRAL	NA	24	"AMN,ANKRD9,APOPT1,BAG5,CDC42BPB,CINP,CKB,DIO3,DYNC1H1,EIF5,EXOC3L4,HSP90AA1,KLC1,MARK3,MOK,PPP2R5C,RCOR1,TECPR2,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZNF839"
TCGA.AG.3906.01A	14	102027794	102880922	112	0.0947	NEUTRAL	NA	9	"CINP,DIO3,DYNC1H1,HSP90AA1,MOK,PPP2R5C,TECPR2,WDR20,ZNF839"
TCGA.AG.3891.01A	14	102027794	103363581	145	-0.1386	NEUTRAL	NA	12	"ANKRD9,CINP,DIO3,DYNC1H1,HSP90AA1,MOK,PPP2R5C,RCOR1,TECPR2,TRAF3,WDR20,ZNF839"
TCGA.AM.5820	14	102121996	104543267	422	0.0277	NEUTRAL	NA	28	"AMN,ANKRD9,APOPT1,BAG5,C14orf2,CDC42BPB,CINP,CKB,DYNC1H1,EIF5,EXOC3L4,HSP90AA1,KLC1,MARK3,MOK,PPP1R13B,PPP2R5C,RCOR1,RD3L,TDRD9,TECPR2,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZFYVE21,ZNF839"
TCGA.AA.A01Q.01A	14	102384131	102486198	36	0.0062	NEUTRAL	NA	2	"DYNC1H1,PPP2R5C"
TCGA.CK.5914.01A	14	102391428	102507882	50	-0.1881	NEUTRAL	NA	2	"DYNC1H1,PPP2R5C"
TCGA.AG.A01W.01A	14	102439297	102922059	58	-0.0055	NEUTRAL	NA	7	"CINP,DYNC1H1,HSP90AA1,MOK,TECPR2,WDR20,ZNF839"
TCGA.AG.3909.01A	14	102452006	102506551	40	0.3597	NEUTRAL	NA	1	DYNC1H1
TCGA.AA.A010.01A	14	102460479	102468822	7	0.0277	NEUTRAL	NA	1	DYNC1H1
TCGA.AG.4009.01A	14	102460479	102516745	46	-0.2143	NEUTRAL	NA	1	DYNC1H1
TCGA.AA.A00Q.01A	14	102468822	103388981	110	0.0634	NEUTRAL	NA	10	"ANKRD9,CINP,DYNC1H1,HSP90AA1,MOK,RCOR1,TECPR2,TRAF3,WDR20,ZNF839"
TCGA.AA.A00Z.01A	14	102500286	105267853	10	-0.1134	NEUTRAL	NA	36	"ADSSL1,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,C14orf180,C14orf2,CDC42BPB,CINP,CKB,DYNC1H1,EIF5,EXOC3L4,HSP90AA1,INF2,KIF26A,KLC1,MARK3,MOK,PPP1R13B,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.3605.01A	14	102500286	106235964	13	-0.0518	NEUTRAL	NA	53	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.A00L.01A	14	102505721	102674923	26	-0.2785	NEUTRAL	NA	3	"DYNC1H1,HSP90AA1,WDR20"
TCGA.AG.3909.01A	14	102506935	102516356	9	-0.2237	NEUTRAL	NA	1	DYNC1H1
TCGA.AG.A00C.01A	14	102516745	102552506	10	0.1445	NEUTRAL	NA	2	"DYNC1H1,HSP90AA1"
TCGA.AG.3909.01A	14	102568185	102661233	5	-0.3853	NEUTRAL	NA	2	"HSP90AA1,WDR20"
TCGA.AG.A00C.01A	14	102568185	103404380	68	-0.3448	NEUTRAL	NA	11	"AMN,ANKRD9,CDC42BPB,CINP,HSP90AA1,MOK,RCOR1,TECPR2,TRAF3,WDR20,ZNF839"
TCGA.AG.4009.01A	14	102568185	103571025	95	-0.3692	NEUTRAL	NA	12	"AMN,ANKRD9,CDC42BPB,CINP,EXOC3L4,HSP90AA1,MOK,RCOR1,TECPR2,TRAF3,WDR20,ZNF839"
TCGA.AA.A010.01A	14	102605540	102771213	16	0.3127	NEUTRAL	NA	3	"HSP90AA1,MOK,WDR20"
TCGA.AA.3861.01A	14	102605540	106329338	380	-0.3555	NEUTRAL	NA	52	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.3956	14	102695692	107128563	561	0.1714	NEUTRAL	NA	50	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,EIF5,EXOC3L4,GPR132,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.EI.6883	14	102698398	107285436	601	0.0128	NEUTRAL	NA	50	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,EIF5,EXOC3L4,GPR132,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.A01Q.01A	14	102717119	103371543	54	-4.00E-04	NEUTRAL	NA	7	"ANKRD9,CINP,MOK,RCOR1,TECPR2,TRAF3,ZNF839"
TCGA.AG.3909.01A	14	102717119	103418796	66	-0.1931	NEUTRAL	NA	9	"AMN,ANKRD9,CDC42BPB,CINP,MOK,RCOR1,TECPR2,TRAF3,ZNF839"
TCGA.AA.A00L.01A	14	102717119	104027080	112	-0.1762	NEUTRAL	NA	16	"AMN,ANKRD9,BAG5,CDC42BPB,CINP,CKB,EIF5,EXOC3L4,MARK3,MOK,RCOR1,TECPR2,TNFAIP2,TRAF3,TRMT61A,ZNF839"
TCGA.AA.A010.01A	14	102802133	102825759	7	-0.4219	NEUTRAL	NA	2	"CINP,ZNF839"
TCGA.AG.3906.01A	14	102891314	102918683	11	-0.3953	NEUTRAL	NA	1	TECPR2
TCGA.AG.3906.01A	14	102931430	103363581	21	0.0948	NEUTRAL	NA	4	"ANKRD9,RCOR1,TECPR2,TRAF3"
TCGA.AG.A01W.01A	14	103055908	103068656	5	0.3514	NEUTRAL	NA	1	RCOR1
TCGA.CK.5914.01A	14	103167544	103192783	9	0.2038	NEUTRAL	NA	1	RCOR1
TCGA.AA.A010.01A	14	103173650	103400002	25	0.1766	NEUTRAL	NA	4	"AMN,CDC42BPB,RCOR1,TRAF3"
TCGA.AG.A01W.01A	14	103223123	103277843	19	0.0858	NEUTRAL	NA	1	TRAF3
TCGA.AG.A01W.01A	14	103278714	103293704	6	-0.4191	NEUTRAL	NA	1	TRAF3
TCGA.AA.3866	14	103362016	105473902	373	0.2255	NEUTRAL	NA	31	"ADSSL1,AHNAK2,AKT1,AMN,APOPT1,ASPG,BAG5,C14orf180,C14orf2,C14orf79,CDC42BPB,CEP170B,CKB,EIF5,EXOC3L4,INF2,KIF26A,KLC1,MARK3,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TMEM179,TNFAIP2,TRAF3,TRMT61A,XRCC3,ZBTB42,ZFYVE21"
TCGA.AG.3906.01A	14	103369555	103449926	22	-0.3179	NEUTRAL	NA	3	"AMN,CDC42BPB,TRAF3"
TCGA.AG.3891.01A	14	103416061	103601507	34	-0.2328	NEUTRAL	NA	3	"CDC42BPB,EXOC3L4,TNFAIP2"
TCGA.AG.A00C.01A	14	103418796	103807266	40	-0.1384	NEUTRAL	NA	4	"CDC42BPB,EIF5,EXOC3L4,TNFAIP2"
TCGA.AA.A01Q.01A	14	103425946	104381356	83	-0.4706	NEUTRAL	NA	14	"APOPT1,BAG5,C14orf2,CDC42BPB,CKB,EIF5,EXOC3L4,KLC1,MARK3,PPP1R13B,TNFAIP2,TRMT61A,XRCC3,ZFYVE21"
TCGA.AA.A00Q.01A	14	103429348	103802134	33	-0.0732	NEUTRAL	NA	4	"CDC42BPB,EIF5,EXOC3L4,TNFAIP2"
TCGA.AG.3906.01A	14	103452784	103573072	8	0.1242	NEUTRAL	NA	2	"CDC42BPB,EXOC3L4"
TCGA.AG.A01W.01A	14	103456964	103552024	19	-0.4777	NEUTRAL	NA	1	CDC42BPB
TCGA.AG.3909.01A	14	103470211	103871364	25	-0.3691	NEUTRAL	NA	5	"CDC42BPB,EIF5,EXOC3L4,MARK3,TNFAIP2"
TCGA.AG.A01W.01A	14	103554135	105425367	242	-0.0119	NEUTRAL	NA	27	"ADSSL1,AHNAK2,AKT1,APOPT1,ASPG,BAG5,C14orf180,C14orf2,CEP170B,CKB,EIF5,EXOC3L4,INF2,KIF26A,KLC1,MARK3,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TMEM179,TNFAIP2,TRMT61A,XRCC3,ZBTB42,ZFYVE21"
TCGA.AA.A00Q.01A	14	103802977	105212526	84	0.3071	NEUTRAL	NA	19	"ADSSL1,APOPT1,ASPG,BAG5,C14orf180,C14orf2,CKB,EIF5,INF2,KIF26A,KLC1,MARK3,PPP1R13B,RD3L,TDRD9,TMEM179,TRMT61A,XRCC3,ZFYVE21"
TCGA.CM.6675	14	103841017	107285436	382	0.0568	NEUTRAL	NA	38	"ADSSL1,AHNAK2,AKT1,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDCA4,CEP170B,CKB,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,KLC1,MARK3,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,TRMT61A,XRCC3,ZBTB42,ZFYVE21"
TCGA.AG.3891.01A	14	103852293	104481030	81	-0.1813	NEUTRAL	NA	12	"APOPT1,BAG5,C14orf2,CKB,KLC1,MARK3,PPP1R13B,RD3L,TDRD9,TRMT61A,XRCC3,ZFYVE21"
TCGA.AG.4009.01A	14	103852293	105422873	157	-0.4013	NEUTRAL	NA	24	"ADSSL1,AHNAK2,AKT1,APOPT1,ASPG,BAG5,C14orf180,C14orf2,CEP170B,CKB,INF2,KIF26A,KLC1,MARK3,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TMEM179,TRMT61A,XRCC3,ZBTB42,ZFYVE21"
TCGA.AG.3906.01A	14	103852293	106110804	201	0.0186	NEUTRAL	NA	38	"ADSSL1,AHNAK2,AKT1,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDCA4,CEP170B,CKB,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,KLC1,MARK3,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,TRMT61A,XRCC3,ZBTB42,ZFYVE21"
TCGA.AA.A00N.01A	14	103871364	103958107	14	0.3012	NEUTRAL	NA	1	MARK3
TCGA.CK.5914.01A	14	103871364	103988626	22	-0.1084	NEUTRAL	NA	2	"CKB,MARK3"
TCGA.AG.A00C.01A	14	103966426	104381356	51	-0.2167	NEUTRAL	NA	10	"APOPT1,BAG5,C14orf2,CKB,KLC1,MARK3,PPP1R13B,TRMT61A,XRCC3,ZFYVE21"
TCGA.AA.A010.01A	14	104029249	104263671	48	-0.175	NEUTRAL	NA	5	"APOPT1,KLC1,PPP1R13B,XRCC3,ZFYVE21"
TCGA.AA.A00L.01A	14	104037933	104145671	15	0.2824	NEUTRAL	NA	2	"APOPT1,KLC1"
TCGA.DC.4745	14	104054571	107285436	343	-0.0446	NEUTRAL	NA	34	"ADSSL1,AHNAK2,AKT1,APOPT1,ASPG,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,KLC1,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,XRCC3,ZBTB42,ZFYVE21"
TCGA.AA.A00L.01A	14	104151248	104199271	10	-0.3806	NEUTRAL	NA	3	"KLC1,XRCC3,ZFYVE21"
TCGA.AA.3862.01A	14	104166928	106329338	255	-0.4889	NEUTRAL	NA	33	"ADSSL1,AHNAK2,AKT1,ASPG,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,KLC1,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,XRCC3,ZBTB42,ZFYVE21"
TCGA.AG.3909.01A	14	104245030	105054035	32	0.3012	NEUTRAL	NA	7	"ASPG,C14orf180,C14orf2,KIF26A,PPP1R13B,RD3L,TDRD9"
TCGA.AA.A00L.01A	14	104378921	104490863	19	0.0651	NEUTRAL	NA	3	"C14orf2,RD3L,TDRD9"
TCGA.AA.A00N.01A	14	104394820	104429379	3	-0.2877	NEUTRAL	NA	2	"RD3L,TDRD9"
TCGA.AA.A010.01A	14	104421954	104552052	33	0.3086	NEUTRAL	NA	2	"ASPG,TDRD9"
TCGA.AA.A01Q.01A	14	104441678	105196244	32	0.1289	NEUTRAL	NA	7	"ADSSL1,ASPG,C14orf180,INF2,KIF26A,TDRD9,TMEM179"
TCGA.CK.5914.01A	14	104452507	104518281	26	0.2576	NEUTRAL	NA	1	TDRD9
TCGA.AA.A00L.01A	14	104491864	107178790	116	-0.2783	NEUTRAL	NA	27	"ADSSL1,AHNAK2,AKT1,ASPG,BRF1,BTBD6,C14orf180,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,MTA1,NUDT14,PACS2,PLD4,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,ZBTB42"
TCGA.AA.A01F.01A	14	104518281	105920521	74	-0.0438	NEUTRAL	NA	23	"ADSSL1,AHNAK2,AKT1,ASPG,BRF1,BTBD6,C14orf180,C14orf79,CDCA4,CEP170B,GPR132,INF2,JAG2,KIF26A,MTA1,NUDT14,PACS2,PLD4,SIVA1,TDRD9,TEX22,TMEM179,ZBTB42"
TCGA.AA.A00N.01A	14	104559781	105423698	135	-0.344	NEUTRAL	NA	12	"ADSSL1,AHNAK2,AKT1,ASPG,C14orf180,CEP170B,INF2,KIF26A,PLD4,SIVA1,TMEM179,ZBTB42"
TCGA.AA.A010.01A	14	104633183	105054863	16	-0.3386	NEUTRAL	NA	2	"C14orf180,KIF26A"
TCGA.DM.A1D9	14	104673220	107285436	253	0.2499	NEUTRAL	NA	24	"ADSSL1,AHNAK2,AKT1,BRF1,BTBD6,C14orf180,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,INF2,JAG2,MTA1,NUDT14,PACS2,PLD4,SIVA1,TEX22,TMEM121,TMEM179,ZBTB42"
TCGA.AG.A00C.01A	14	105054035	105405571	34	-0.2105	NEUTRAL	NA	10	"ADSSL1,AHNAK2,AKT1,C14orf180,CEP170B,INF2,PLD4,SIVA1,TMEM179,ZBTB42"
TCGA.AG.3909.01A	14	105054541	105409458	48	-0.2283	NEUTRAL	NA	10	"ADSSL1,AHNAK2,AKT1,C14orf180,CEP170B,INF2,PLD4,SIVA1,TMEM179,ZBTB42"
TCGA.AA.3556	14	105090554	105402417	28	0.0783	NEUTRAL	NA	7	"ADSSL1,AKT1,CEP170B,INF2,PLD4,SIVA1,ZBTB42"
TCGA.AA.A00A.01A	14	105205593	107034732	59	0.0889	NEUTRAL	NA	21	"ADSSL1,AHNAK2,AKT1,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,PLD4,SIVA1,TEX22,TMEM121,ZBTB42"
TCGA.AA.A00Q.01A	14	105213213	105246396	14	-0.2054	NEUTRAL	NA	3	"ADSSL1,AKT1,SIVA1"
TCGA.A6.3808.01A	14	105221926	105258861	14	0.3379	NEUTRAL	NA	2	"AKT1,SIVA1"
TCGA.F5.6811.01A	14	105241763	106353796	122	-0.3561	NEUTRAL	NA	19	"AHNAK2,AKT1,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,PLD4,TEX22,TMEM121,ZBTB42"
TCGA.AA.A00Q.01A	14	105258861	107282751	71	0.3056	NEUTRAL	NA	19	"AHNAK2,AKT1,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,PLD4,TEX22,TMEM121,ZBTB42"
TCGA.AA.A010.01A	14	105359271	105399055	13	-0.1348	NEUTRAL	NA	2	"CEP170B,PLD4"
TCGA.AA.3556	14	105407797	107285436	151	-0.2469	NEUTRAL	NA	15	"AHNAK2,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,TEX22,TMEM121"
TCGA.CK.5914.01A	14	105408879	105414755	12	0.2317	NEUTRAL	NA	1	AHNAK2
TCGA.AG.3909.01A	14	105409761	105452762	21	0.1815	NEUTRAL	NA	2	"AHNAK2,C14orf79"
TCGA.AG.A00C.01A	14	105422873	106067719	42	-0.3315	NEUTRAL	NA	15	"AHNAK2,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,TEX22,TMEM121"
TCGA.AG.A01W.01A	14	105428006	106353795	74	-0.3022	NEUTRAL	NA	15	"AHNAK2,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,TEX22,TMEM121"
TCGA.DC.6160.01A	14	105441314	106353796	72	0.3468	NEUTRAL	NA	15	"AHNAK2,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,TEX22,TMEM121"
TCGA.AA.3866	14	105477506	106000230	61	-0.1158	NEUTRAL	NA	13	"BRF1,BTBD6,C14orf80,CDCA4,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,TEX22,TMEM121"
TCGA.AG.3882	14	105477506	107285436	140	-0.3558	NEUTRAL	NA	13	"BRF1,BTBD6,C14orf80,CDCA4,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,TEX22,TMEM121"
TCGA.AA.A00N.01A	14	105609015	105687947	26	-0.2701	NEUTRAL	NA	3	"BRF1,JAG2,NUDT14"
TCGA.AA.A01Q.01A	14	105609015	105707552	24	0.3178	NEUTRAL	NA	3	"BRF1,JAG2,NUDT14"
TCGA.AG.3909.01A	14	105615065	105676815	6	0.3117	NEUTRAL	NA	3	"BRF1,JAG2,NUDT14"
TCGA.AG.3909.01A	14	105677417	105856220	22	-0.3151	NEUTRAL	NA	3	"BRF1,BTBD6,PACS2"
TCGA.AA.3939.01A	14	105707552	107282751	184	-0.3486	NEUTRAL	NA	9	"BRF1,BTBD6,C14orf80,CRIP1,CRIP2,MTA1,PACS2,TEX22,TMEM121"
TCGA.AA.A02K.01A	14	105707553	106370315	108	-0.2286	NEUTRAL	NA	9	"BRF1,BTBD6,C14orf80,CRIP1,CRIP2,MTA1,PACS2,TEX22,TMEM121"
TCGA.AA.A01Q.01A	14	105715181	105860854	28	-0.4538	NEUTRAL	NA	3	"BRF1,BTBD6,PACS2"
TCGA.AG.3909.01A	14	105858904	106054399	14	0.2872	NEUTRAL	NA	7	"C14orf80,CRIP1,CRIP2,MTA1,PACS2,TEX22,TMEM121"
TCGA.AA.A01Q.01A	14	105904946	107178790	40	0.3369	NEUTRAL	NA	5	"C14orf80,CRIP1,CRIP2,MTA1,TMEM121"
TCGA.AA.A01F.01A	14	105924560	107178790	13	-0.2976	NEUTRAL	NA	5	"C14orf80,CRIP1,CRIP2,MTA1,TMEM121"
TCGA.AA.A00N.01A	14	105931379	106388358	97	-0.2267	NEUTRAL	NA	5	"C14orf80,CRIP1,CRIP2,MTA1,TMEM121"
TCGA.AA.3844	14	106008644	107285436	79	-0.1771	NEUTRAL	NA	0	None
TCGA.AA.3941	14	106008644	107285436	79	0.3373	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	14	106053257	106725551	74	-0.1963	NEUTRAL	NA	0	None
TCGA.A6.3808.01A	14	106066422	106110804	10	0.2482	NEUTRAL	NA	0	None
TCGA.AA.3982	14	106078689	107285436	78	-0.0324	NEUTRAL	NA	0	None
TCGA.AA.3866	14	106194762	107285436	76	-0.1331	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	14	106232196	107282751	112	0.1207	NEUTRAL	NA	0	None
TCGA.AG.3906.01A	14	106306656	107034732	71	-0.2567	NEUTRAL	NA	0	None
TCGA.AA.3967.01A	14	106329338	107282751	84	-0.3624	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	14	106356981	106405602	18	0.125	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	14	106372998	106518482	18	0.1933	NEUTRAL	NA	0	None
TCGA.AA.A02K.01A	14	106382615	106791088	26	-0.1552	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	14	106573323	107282751	50	0.2436	NEUTRAL	NA	0	None
TCGA.AM.5820	14	106715488	107285436	72	0.0685	NEUTRAL	NA	0	None
TCGA.AA.A00N.01A	14	106725551	106829672	10	0.2544	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	14	106725551	106829672	10	0.0667	NEUTRAL	NA	0	None
TCGA.AA.A02K.01A	14	106829673	106993967	11	0.0388	NEUTRAL	NA	0	None
TCGA.G4.6322	14	106846440	107285436	70	-0.0419	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	14	106962962	107282751	22	0.3358	NEUTRAL	NA	0	None
TCGA.AG.3881	14	106973707	107285436	68	-0.3434	NEUTRAL	NA	0	None
TCGA.AA.A02K.01A	14	106994155	107282750	18	-0.2875	NEUTRAL	NA	0	None
TCGA.AA.3956	14	107133195	107285436	46	-0.1915	NEUTRAL	NA	0	None
TCGA.AG.3728	14	107177930	107285436	30	0.0986	NEUTRAL	NA	0	None
TCGA.5M.AAT4	14	107240990	107285436	11	0.1227	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	15	18429883	21361986	89	0.3315	NEUTRAL	NA	4	"GOLGA6L6,POTEB,POTEB2,POTEB3"
TCGA.AG.A036.01A	15	18429883	100279871	6156	-0.1671	NEUTRAL	NA	552	Too-Many
TCGA.CK.4952.01A	15	18848557	30237885	398	-0.066	NEUTRAL	NA	31	"APBA2,ATP10A,CYFIP1,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TJP1,TUBGCP5,UBE3A"
TCGA.F5.6811.01A	15	18848557	60092490	3150	-0.3403	NEUTRAL	NA	265	Too-Many
TCGA.DC.6160.01A	15	18848557	100279870	6162	0.0856	NEUTRAL	NA	552	Too-Many
TCGA.NH.A8F7	15	20143408	20192010	6	0.0877	NEUTRAL	NA	0	None
TCGA.SS.A7HO	15	20143408	20192010	6	0.0838	NEUTRAL	NA	0	None
TCGA.D5.6929	15	20143408	20550685	8	0.0636	NEUTRAL	NA	0	None
TCGA.NH.A50U	15	20143408	20550685	8	-0.3638	NEUTRAL	NA	0	None
TCGA.AF.2689	15	20143408	20573343	10	-0.0014	NEUTRAL	NA	0	None
TCGA.G4.6299	15	20143408	20947077	12	0.3414	NEUTRAL	NA	1	GOLGA6L6
TCGA.NH.A6GA	15	20143408	21909390	13	-0.4083	NEUTRAL	NA	4	"GOLGA6L6,POTEB,POTEB2,POTEB3"
TCGA.AA.3667	15	20143408	22582901	18	-0.4524	NEUTRAL	NA	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.3941	15	20143408	22582901	16	-0.3601	NEUTRAL	NA	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.DM.A28A	15	20143408	22765682	19	0.2547	NEUTRAL	NA	8	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.CM.5862	15	20143408	22777874	21	0.0139	NEUTRAL	NA	8	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.CL.5917	15	20143408	23226253	104	0.0892	NEUTRAL	NA	12	"CYFIP1,GOLGA6L1,GOLGA6L22,GOLGA6L6,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.3697	15	20143408	24198151	320	-0.427	NEUTRAL	NA	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AF.3911	15	20143408	24198151	321	-0.502	NEUTRAL	NA	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.D5.6535	15	20143408	24382442	383	-0.3626	NEUTRAL	NA	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AZ.5403	15	20143408	24386622	384	-0.2579	NEUTRAL	NA	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.DY.A0XA	15	20143408	24669744	424	0.0116	NEUTRAL	NA	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.CL.5918	15	20143408	24727230	426	0.0851	NEUTRAL	NA	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.EI.6882	15	20143408	24788340	429	-0.0124	NEUTRAL	NA	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.3989	15	20143408	25385629	612	0.0593	NEUTRAL	NA	19	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5"
TCGA.AA.3844	15	20143408	25385992	606	-0.1965	NEUTRAL	NA	19	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5"
TCGA.BM.6198	15	20143408	25453743	638	0.06395	NEUTRAL	NA	19	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5"
TCGA.CM.5348	15	20143408	25618232	667	-0.0561	NEUTRAL	NA	20	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.EI.6506	15	20143408	25667759	668	-0.0031	NEUTRAL	NA	20	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AG.4008	15	20143408	26938314	1261	-0.4026	NEUTRAL	NA	22	"ATP10A,CYFIP1,GABRB3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AG.3732	15	20143408	27379406	1403	0.0305	NEUTRAL	NA	24	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AA.3851	15	20143408	27682850	1491	-0.1363	NEUTRAL	NA	24	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AA.3712	15	20143408	29247028	1810	-0.4393	NEUTRAL	NA	28	"APBA2,ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.DM.A288	15	20143408	30369913	2199	-0.2683	NEUTRAL	NA	31	"APBA2,ATP10A,CYFIP1,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TJP1,TUBGCP5,UBE3A"
TCGA.EI.6511	15	20143408	30369913	2203	0.0236	NEUTRAL	NA	31	"APBA2,ATP10A,CYFIP1,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TJP1,TUBGCP5,UBE3A"
TCGA.AA.3666	15	20143408	31331133	2287	-0.5009	NEUTRAL	NA	39	"APBA2,ARHGAP11B,ATP10A,CHRFAM7A,CYFIP1,FAM189A1,FAN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AY.A71X	15	20143408	31515211	2371	-0.0349	NEUTRAL	NA	40	"APBA2,ARHGAP11B,ATP10A,CHRFAM7A,CYFIP1,FAM189A1,FAN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,LOC283710,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AF.6136	15	20143408	33720622	3104	-0.1039	NEUTRAL	NA	51	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,CYFIP1,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,OTUD7A,POTEB,POTEB2,POTEB3,RYR3,SCG5,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AH.6544	15	20143408	33908315	3226	-0.2994	NEUTRAL	NA	51	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,CYFIP1,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,OTUD7A,POTEB,POTEB2,POTEB3,RYR3,SCG5,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.A6.5659	15	20143408	34984990	3314	-0.1844	NEUTRAL	NA	63	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AA.3850	15	20143408	35380591	3774	0.14875	NEUTRAL	NA	67	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.3982	15	20143408	35397369	3773	-0.1478	NEUTRAL	NA	67	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.G4.6322	15	20143408	37539806	4545	-0.0083	NEUTRAL	NA	70	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.CM.5864	15	20143408	38100672	4700	-0.1097	NEUTRAL	NA	70	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.3L.AA1B	15	20143408	38538824	4861	0.1308	NEUTRAL	NA	71	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.CA.6719	15	20143408	38799368	4925	-0.3949	NEUTRAL	NA	74	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RASGRP1,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.3811	15	20143408	40058874	5541	-0.0924	NEUTRAL	NA	78	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,C15orf53,C15orf54,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RASGRP1,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.3869	15	20143408	40192917	5598	-0.4674	NEUTRAL	NA	79	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,C15orf53,C15orf54,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RASGRP1,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.3872	15	20143408	40387970	5655	-0.2649	NEUTRAL	NA	82	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,BMF,C15orf41,C15orf53,C15orf54,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EIF2AK4,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RASGRP1,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.3519	15	20143408	40884718	5776	-0.0458	NEUTRAL	NA	97	"ACTC1,ANKRD63,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,CHRFAM7A,CHRM5,CHRNA7,CHST14,CYFIP1,DISP2,DPH6,EIF2AK4,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,HERC2,INAFM2,IVD,KATNBL1,KLF13,KNSTRN,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PAK6,PGBD4,PHGR1,PLCB2,POTEB,POTEB2,POTEB3,RASGRP1,RPUSD2,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.D5.6531	15	20143408	40889823	5777	-0.2676	NEUTRAL	NA	98	"ACTC1,ANKRD63,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,CASC5,CHRFAM7A,CHRM5,CHRNA7,CHST14,CYFIP1,DISP2,DPH6,EIF2AK4,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,HERC2,INAFM2,IVD,KATNBL1,KLF13,KNSTRN,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PAK6,PGBD4,PHGR1,PLCB2,POTEB,POTEB2,POTEB3,RASGRP1,RPUSD2,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.3680	15	20143408	40915893	5787	-0.0076	NEUTRAL	NA	98	"ACTC1,ANKRD63,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,CASC5,CHRFAM7A,CHRM5,CHRNA7,CHST14,CYFIP1,DISP2,DPH6,EIF2AK4,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,HERC2,INAFM2,IVD,KATNBL1,KLF13,KNSTRN,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PAK6,PGBD4,PHGR1,PLCB2,POTEB,POTEB2,POTEB3,RASGRP1,RPUSD2,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.3819	15	20143408	41053249	5802	-0.011	NEUTRAL	NA	100	"ACTC1,ANKRD63,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,CASC5,CHRFAM7A,CHRM5,CHRNA7,CHST14,CYFIP1,DISP2,DPH6,EIF2AK4,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,HERC2,INAFM2,IVD,KATNBL1,KLF13,KNSTRN,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PAK6,PGBD4,PHGR1,PLCB2,POTEB,POTEB2,POTEB3,RAD51,RASGRP1,RMDN3,RPUSD2,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.DC.4745	15	20143408	41588871	5882	-0.0341	NEUTRAL	NA	113	Too-Many
TCGA.AG.3727	15	20143408	42528675	6114	0.0032	NEUTRAL	NA	133	Too-Many
TCGA.AY.4070	15	20143408	42785136	6146	-0.3439	NEUTRAL	NA	136	Too-Many
TCGA.CI.6622	15	20143408	47513252	7142	-0.0001	NEUTRAL	NA	189	Too-Many
TCGA.DM.A1D6	15	20143408	54247332	9391	0.0353	NEUTRAL	NA	231	Too-Many
TCGA.AA.3864	15	20143408	54580785	9520	0.0044	NEUTRAL	NA	232	Too-Many
TCGA.AA.3852	15	20143408	57394107	10313	-0.0118	NEUTRAL	NA	247	Too-Many
TCGA.F5.6864	15	20143408	57413775	10287	-0.0006	NEUTRAL	NA	247	Too-Many
TCGA.AA.3875	15	20143408	59666991	11325	-0.006	NEUTRAL	NA	261	Too-Many
TCGA.A6.2675	15	20143408	60951443	11718	-0.3208	NEUTRAL	NA	269	Too-Many
TCGA.AF.3913	15	20143408	60984519	11776	-0.0451	NEUTRAL	NA	269	Too-Many
TCGA.A6.6782	15	20143408	61684204	12202	-0.3062	NEUTRAL	NA	269	Too-Many
TCGA.AG.3592	15	20143408	61877102	12365	-0.4813	NEUTRAL	NA	269	Too-Many
TCGA.AA.3518	15	20143408	63056537	12832	-0.0201	NEUTRAL	NA	273	Too-Many
TCGA.G4.6303	15	20143408	63995422	13218	-0.3944	NEUTRAL	NA	282	Too-Many
TCGA.AG.3731	15	20143408	64017322	13221	-0.0247	NEUTRAL	NA	282	Too-Many
TCGA.CK.5913	15	20143408	64260943	13268	-0.0106	NEUTRAL	NA	283	Too-Many
TCGA.QG.A5Z1	15	20143408	66816182	13653	0.0685	NEUTRAL	NA	321	Too-Many
TCGA.G4.6626	15	20143408	66915564	13828	-0.3738	NEUTRAL	NA	322	Too-Many
TCGA.AG.3881	15	20143408	67319107	14035	-0.3064	NEUTRAL	NA	323	Too-Many
TCGA.A6.5662	15	20143408	67467506	14090	0.0185	NEUTRAL	NA	324	Too-Many
TCGA.F4.6461	15	20143408	70520076	15028	-0.005	NEUTRAL	NA	343	Too-Many
TCGA.A6.6649	15	20143408	72462164	15640	0.2028	NEUTRAL	NA	353	Too-Many
TCGA.AA.3681	15	20143408	73007892	15719	0.0135	NEUTRAL	NA	361	Too-Many
TCGA.AG.4022	15	20143408	74898418	16170	-0.0317	NEUTRAL	NA	381	Too-Many
TCGA.DY.A1DG	15	20143408	77133321	16493	-0.5046	NEUTRAL	NA	416	Too-Many
TCGA.AA.3856	15	20143408	81406487	17919	-0.3734	NEUTRAL	NA	454	Too-Many
TCGA.DC.6681	15	20143408	82306196	18121	-0.0014	NEUTRAL	NA	458	Too-Many
TCGA.CA.5254	15	20143408	85251712	18548	0.0949	NEUTRAL	NA	483	Too-Many
TCGA.CI.6620	15	20143408	86123987	18800	0.0148	NEUTRAL	NA	488	Too-Many
TCGA.F5.6812	15	20143408	86123987	18802	-0.4322	NEUTRAL	NA	488	Too-Many
TCGA.DY.A1DC	15	20143408	88493893	19910	-0.3952	NEUTRAL	NA	491	Too-Many
TCGA.AA.3994	15	20143408	88759837	20044	-0.0067	NEUTRAL	NA	491	Too-Many
TCGA.AH.6643	15	20143408	88977319	20095	-0.2816	NEUTRAL	NA	491	Too-Many
TCGA.CI.6623	15	20143408	90755513	20669	-0.4239	NEUTRAL	NA	518	Too-Many
TCGA.AA.3867	15	20143408	94362413	22293	-0.0863	NEUTRAL	NA	540	Too-Many
TCGA.F4.6808	15	20143408	94486046	22308	-0.2876	NEUTRAL	NA	540	Too-Many
TCGA.AA.3956	15	20143408	96098892	23013	0.0328	NEUTRAL	NA	541	Too-Many
TCGA.G5.6233	15	20143408	100377045	24632	-0.1433	NEUTRAL	NA	552	Too-Many
TCGA.AG.4021	15	20143408	100974314	24891	-0.0083	NEUTRAL	NA	554	Too-Many
TCGA.D5.6539	15	20143408	101332972	25004	-0.082	NEUTRAL	NA	556	Too-Many
TCGA.A6.6141	15	20143408	101634363	25181	-0.0042	NEUTRAL	NA	558	Too-Many
TCGA.AA.3531	15	20143408	101927072	25317	-0.0297	NEUTRAL	NA	562	Too-Many
TCGA.4T.AA8H	15	20143408	102400036	25506	-0.0078	NEUTRAL	NA	566	Too-Many
TCGA.5M.AAT4	15	20143408	102400036	25505	-0.4918	NEUTRAL	NA	566	Too-Many
TCGA.5M.AAT5	15	20143408	102400036	25504	-0.1476	NEUTRAL	NA	566	Too-Many
TCGA.5M.AAT6	15	20143408	102400036	25504	0.0063	NEUTRAL	NA	566	Too-Many
TCGA.5M.AATA	15	20143408	102400036	25487	-0.0471	NEUTRAL	NA	566	Too-Many
TCGA.A6.2672	15	20143408	102400036	25405	-0.1561	NEUTRAL	NA	566	Too-Many
TCGA.A6.2674	15	20143408	102400036	25502	-0.1887	NEUTRAL	NA	566	Too-Many
TCGA.A6.2683	15	20143408	102400036	25485	-0.437	NEUTRAL	NA	566	Too-Many
TCGA.A6.2684	15	20143408	102400036	23490	-0.0218	NEUTRAL	NA	566	Too-Many
TCGA.A6.3807	15	20143408	102400036	25394	-0.3815	NEUTRAL	NA	566	Too-Many
TCGA.A6.4105	15	20143408	102400036	25510	-0.0011	NEUTRAL	NA	566	Too-Many
TCGA.A6.5657	15	20143408	102400036	25458	-0.0144	NEUTRAL	NA	566	Too-Many
TCGA.A6.5660	15	20143408	102400036	25424	-0.5069	NEUTRAL	NA	566	Too-Many
TCGA.A6.5661	15	20143408	102400036	25445	-0.1867	NEUTRAL	NA	566	Too-Many
TCGA.A6.5664	15	20143408	102400036	25441	0.0037	NEUTRAL	NA	566	Too-Many
TCGA.A6.5665	15	20143408	102400036	25456	-0.1188	NEUTRAL	NA	566	Too-Many
TCGA.A6.5666	15	20143408	102400036	25487	0.0107	NEUTRAL	NA	566	Too-Many
TCGA.A6.5667	15	20143408	102400036	25491	-0.2092	NEUTRAL	NA	566	Too-Many
TCGA.A6.6137	15	20143408	102400036	25512	0.006	NEUTRAL	NA	566	Too-Many
TCGA.A6.6140	15	20143408	102400036	25512	-0.0046	NEUTRAL	NA	566	Too-Many
TCGA.A6.6142	15	20143408	102400036	25506	-0.2715	NEUTRAL	NA	566	Too-Many
TCGA.A6.6648	15	20143408	102400036	25509	-0.0117	NEUTRAL	NA	566	Too-Many
TCGA.A6.6651	15	20143408	102400036	25416	-0.0655	NEUTRAL	NA	566	Too-Many
TCGA.A6.6652	15	20143408	102400036	25507	-0.0085	NEUTRAL	NA	566	Too-Many
TCGA.A6.6653	15	20143408	102400036	25503	-0.0292	NEUTRAL	NA	566	Too-Many
TCGA.A6.6654	15	20143408	102400036	25442	0.0549	NEUTRAL	NA	566	Too-Many
TCGA.A6.6781	15	20143408	102400036	23469	-0.009	NEUTRAL	NA	566	Too-Many
TCGA.A6.A565	15	20143408	102400036	25328	-0.0169	NEUTRAL	NA	566	Too-Many
TCGA.A6.A566	15	20143408	102400036	25259	0.0081	NEUTRAL	NA	566	Too-Many
TCGA.AA.3489	15	20143408	102400036	25426	-0.2246	NEUTRAL	NA	566	Too-Many
TCGA.AA.3496	15	20143408	102400036	25429	0.0058	NEUTRAL	NA	566	Too-Many
TCGA.AA.3514	15	20143408	102400036	25494	-0.0002	NEUTRAL	NA	566	Too-Many
TCGA.AA.3516	15	20143408	102400036	25459	0.0104	NEUTRAL	NA	566	Too-Many
TCGA.AA.3522	15	20143408	102400036	25493	-0.3739	NEUTRAL	NA	566	Too-Many
TCGA.AA.3524	15	20143408	102400036	25484	-0.0077	NEUTRAL	NA	566	Too-Many
TCGA.AA.3526	15	20143408	102400036	25503	-0.0194	NEUTRAL	NA	566	Too-Many
TCGA.AA.3527	15	20143408	102400036	25490	-0.0137	NEUTRAL	NA	566	Too-Many
TCGA.AA.3529	15	20143408	102400036	25495	-0.0229	NEUTRAL	NA	566	Too-Many
TCGA.AA.3530	15	20143408	102400036	25456	0.0659	NEUTRAL	NA	566	Too-Many
TCGA.AA.3543	15	20143408	102400036	25482	-0.013	NEUTRAL	NA	566	Too-Many
TCGA.AA.3555	15	20143408	102400036	25518	-0.0017	NEUTRAL	NA	566	Too-Many
TCGA.AA.3556	15	20143408	102400036	25447	-0.1813	NEUTRAL	NA	566	Too-Many
TCGA.AA.3558	15	20143408	102400036	25512	-0.0065	NEUTRAL	NA	566	Too-Many
TCGA.AA.3561	15	20143408	102400036	25511	-0.0018	NEUTRAL	NA	566	Too-Many
TCGA.AA.3655	15	20143408	102400036	25497	-0.007	NEUTRAL	NA	566	Too-Many
TCGA.AA.3660	15	20143408	102400036	25500	-0.0104	NEUTRAL	NA	566	Too-Many
TCGA.AA.3662	15	20143408	102400036	25504	-0.0946	NEUTRAL	NA	566	Too-Many
TCGA.AA.3664	15	20143408	102400036	25521	0.0041	NEUTRAL	NA	566	Too-Many
TCGA.AA.3675	15	20143408	102400036	25512	0.0073	NEUTRAL	NA	566	Too-Many
TCGA.AA.3679	15	20143408	102400036	25511	-0.0052	NEUTRAL	NA	566	Too-Many
TCGA.AA.3684	15	20143408	102400036	25513	0.1944	NEUTRAL	NA	566	Too-Many
TCGA.AA.3685	15	20143408	102400036	25522	-0.2029	NEUTRAL	NA	566	Too-Many
TCGA.AA.3688	15	20143408	102400036	25524	-0.2751	NEUTRAL	NA	566	Too-Many
TCGA.AA.3692	15	20143408	102400036	25518	-0.2203	NEUTRAL	NA	566	Too-Many
TCGA.AA.3695	15	20143408	102400036	25524	-0.3961	NEUTRAL	NA	566	Too-Many
TCGA.AA.3696	15	20143408	102400036	25522	-0.0079	NEUTRAL	NA	566	Too-Many
TCGA.AA.3710	15	20143408	102400036	25494	-0.0237	NEUTRAL	NA	566	Too-Many
TCGA.AA.3713	15	20143408	102400036	25489	-0.0008	NEUTRAL	NA	566	Too-Many
TCGA.AA.3715	15	20143408	102400036	25519	0.0012	NEUTRAL	NA	566	Too-Many
TCGA.AA.3812	15	20143408	102400036	25522	-0.004	NEUTRAL	NA	566	Too-Many
TCGA.AA.3814	15	20143408	102400036	25521	-0.0172	NEUTRAL	NA	566	Too-Many
TCGA.AA.3818	15	20143408	102400036	25518	-0.0191	NEUTRAL	NA	566	Too-Many
TCGA.AA.3821	15	20143408	102400036	25471	-0.0231	NEUTRAL	NA	566	Too-Many
TCGA.AA.3833	15	20143408	102400036	25518	-0.0195	NEUTRAL	NA	566	Too-Many
TCGA.AA.3837	15	20143408	102400036	25521	-0.2993	NEUTRAL	NA	566	Too-Many
TCGA.AA.3841	15	20143408	102400036	25524	-0.3916	NEUTRAL	NA	566	Too-Many
TCGA.AA.3842	15	20143408	102400036	25500	-0.4198	NEUTRAL	NA	566	Too-Many
TCGA.AA.3846	15	20143408	102400036	25488	-0.3927	NEUTRAL	NA	566	Too-Many
TCGA.AA.3855	15	20143408	102400036	25456	-0.0307	NEUTRAL	NA	566	Too-Many
TCGA.AA.3858	15	20143408	102400036	25519	-0.0963	NEUTRAL	NA	566	Too-Many
TCGA.AA.3860	15	20143408	102400036	25510	0.0219	NEUTRAL	NA	566	Too-Many
TCGA.AA.3866	15	20143408	102400036	25495	-0.1785	NEUTRAL	NA	566	Too-Many
TCGA.AA.3877	15	20143408	102400036	25489	-0.0033	NEUTRAL	NA	566	Too-Many
TCGA.AA.3947	15	20143408	102400036	25469	0.003	NEUTRAL	NA	566	Too-Many
TCGA.AA.3949	15	20143408	102400036	25493	0.027	NEUTRAL	NA	566	Too-Many
TCGA.AA.3955	15	20143408	102400036	25491	-0.0452	NEUTRAL	NA	566	Too-Many
TCGA.AA.3966	15	20143408	102400036	25480	-0.1903	NEUTRAL	NA	566	Too-Many
TCGA.AA.3968	15	20143408	102400036	25486	-0.3505	NEUTRAL	NA	566	Too-Many
TCGA.AA.3971	15	20143408	102400036	25492	0.0016	NEUTRAL	NA	566	Too-Many
TCGA.AA.3972	15	20143408	102400036	25497	-0.4268	NEUTRAL	NA	566	Too-Many
TCGA.AA.3976	15	20143408	102400036	25491	-0.0561	NEUTRAL	NA	566	Too-Many
TCGA.AA.3984	15	20143408	102400036	25477	0.0094	NEUTRAL	NA	566	Too-Many
TCGA.AA.3986	15	20143408	102400036	25489	0.0062	NEUTRAL	NA	566	Too-Many
TCGA.AD.5900	15	20143408	102400036	25470	-0.0073	NEUTRAL	NA	566	Too-Many
TCGA.AD.6548	15	20143408	102400036	25429	-0.0104	NEUTRAL	NA	566	Too-Many
TCGA.AD.6888	15	20143408	102400036	25476	-0.0117	NEUTRAL	NA	566	Too-Many
TCGA.AD.6889	15	20143408	102400036	25481	-0.0165	NEUTRAL	NA	566	Too-Many
TCGA.AD.6890	15	20143408	102400036	25480	-0.0079	NEUTRAL	NA	566	Too-Many
TCGA.AD.6895	15	20143408	102400036	25472	-0.0109	NEUTRAL	NA	566	Too-Many
TCGA.AD.6899	15	20143408	102400036	25421	-0.2504	NEUTRAL	NA	566	Too-Many
TCGA.AD.6901	15	20143408	102400036	25440	-0.2974	NEUTRAL	NA	566	Too-Many
TCGA.AD.6963	15	20143408	102400036	25483	-0.231	NEUTRAL	NA	566	Too-Many
TCGA.AD.6964	15	20143408	102400036	25474	-0.0116	NEUTRAL	NA	566	Too-Many
TCGA.AD.6965	15	20143408	102400036	25447	-0.0697	NEUTRAL	NA	566	Too-Many
TCGA.AD.A5EJ	15	20143408	102400036	25335	-0.0075	NEUTRAL	NA	566	Too-Many
TCGA.AF.2687	15	20143408	102400036	25434	-0.232	NEUTRAL	NA	566	Too-Many
TCGA.AF.2690	15	20143408	102400036	25516	0.0043	NEUTRAL	NA	566	Too-Many
TCGA.AF.2691	15	20143408	102400036	25503	-0.1582	NEUTRAL	NA	566	Too-Many
TCGA.AF.2692	15	20143408	102400036	25519	-0.2305	NEUTRAL	NA	566	Too-Many
TCGA.AF.2693	15	20143408	102400036	25499	-0.0144	NEUTRAL	NA	566	Too-Many
TCGA.AF.4110	15	20143408	102400036	25499	-0.2787	NEUTRAL	NA	566	Too-Many
TCGA.AF.5654	15	20143408	102400036	25443	0	NEUTRAL	NA	566	Too-Many
TCGA.AF.6655	15	20143408	102400036	25449	-0.016	NEUTRAL	NA	566	Too-Many
TCGA.AF.6672	15	20143408	102400036	25459	-0.4032	NEUTRAL	NA	566	Too-Many
TCGA.AF.A56K	15	20143408	102400036	25445	-0.0605	NEUTRAL	NA	566	Too-Many
TCGA.AF.A56L	15	20143408	102400036	25451	-0.2011	NEUTRAL	NA	566	Too-Many
TCGA.AG.3574	15	20143408	102400036	25519	-0.0075	NEUTRAL	NA	566	Too-Many
TCGA.AG.3575	15	20143408	102400036	25517	-0.0069	NEUTRAL	NA	566	Too-Many
TCGA.AG.3580	15	20143408	102400036	25505	-0.0007	NEUTRAL	NA	566	Too-Many
TCGA.AG.3581	15	20143408	102400036	25517	-0.0142	NEUTRAL	NA	566	Too-Many
TCGA.AG.3583	15	20143408	102400036	24745	-0.2987	NEUTRAL	NA	566	Too-Many
TCGA.AG.3594	15	20143408	102400036	25509	0.012	NEUTRAL	NA	566	Too-Many
TCGA.AG.3599	15	20143408	102400036	25487	-0.0021	NEUTRAL	NA	566	Too-Many
TCGA.AG.3602	15	20143408	102400036	25359	0.0081	NEUTRAL	NA	566	Too-Many
TCGA.AG.3725	15	20143408	102400036	25477	-0.4929	NEUTRAL	NA	566	Too-Many
TCGA.AG.3726	15	20143408	102400036	25504	-0.0028	NEUTRAL	NA	566	Too-Many
TCGA.AG.3728	15	20143408	102400036	25524	-0.3175	NEUTRAL	NA	566	Too-Many
TCGA.AG.3878	15	20143408	102400036	25517	0.0206	NEUTRAL	NA	566	Too-Many
TCGA.AG.3882	15	20143408	102400036	25521	-0.3775	NEUTRAL	NA	566	Too-Many
TCGA.AG.3885	15	20143408	102400036	25517	-0.0127	NEUTRAL	NA	566	Too-Many
TCGA.AG.3887	15	20143408	102400036	25417	-0.0042	NEUTRAL	NA	566	Too-Many
TCGA.AG.3892	15	20143408	102400036	25431	-0.0032	NEUTRAL	NA	566	Too-Many
TCGA.AG.3894	15	20143408	102400036	25440	-0.0035	NEUTRAL	NA	566	Too-Many
TCGA.AG.3896	15	20143408	102400036	25445	-0.0003	NEUTRAL	NA	566	Too-Many
TCGA.AG.3898	15	20143408	102400036	25416	-0.0025	NEUTRAL	NA	566	Too-Many
TCGA.AG.3901	15	20143408	102400036	25443	-0.2881	NEUTRAL	NA	566	Too-Many
TCGA.AG.3902	15	20143408	102400036	25437	-0.0359	NEUTRAL	NA	566	Too-Many
TCGA.AG.4015	15	20143408	102400036	25436	-0.4586	NEUTRAL	NA	566	Too-Many
TCGA.AG.A020	15	20143408	102400036	25475	-0.0499	NEUTRAL	NA	566	Too-Many
TCGA.AG.A02N	15	20143408	102400036	25483	0.0072	NEUTRAL	NA	566	Too-Many
TCGA.AH.6547	15	20143408	102400036	25469	-0.0084	NEUTRAL	NA	566	Too-Many
TCGA.AH.6897	15	20143408	102400036	25452	0.0044	NEUTRAL	NA	566	Too-Many
TCGA.AM.5821	15	20143408	102400036	25429	0.0157	NEUTRAL	NA	566	Too-Many
TCGA.AU.3779	15	20143408	102400036	25498	-0.2387	NEUTRAL	NA	566	Too-Many
TCGA.AY.6197	15	20143408	102400036	24895	0.0001	NEUTRAL	NA	566	Too-Many
TCGA.AY.6386	15	20143408	102400036	25490	-0.0017	NEUTRAL	NA	566	Too-Many
TCGA.AY.A69D	15	20143408	102400036	25467	-0.3251	NEUTRAL	NA	566	Too-Many
TCGA.AY.A8YK	15	20143408	102400036	25494	-0.4344	NEUTRAL	NA	566	Too-Many
TCGA.AZ.4323	15	20143408	102400036	25406	0.018	NEUTRAL	NA	566	Too-Many
TCGA.AZ.4616	15	20143408	102400036	25429	-0.0355	NEUTRAL	NA	566	Too-Many
TCGA.AZ.5407	15	20143408	102400036	25503	-0.1759	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6598	15	20143408	102400036	25509	-0.0041	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6599	15	20143408	102400036	25514	-0.0157	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6600	15	20143408	102400036	25481	0.0138	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6601	15	20143408	102400036	25514	-0.0063	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6603	15	20143408	102400036	25451	-0.2106	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6605	15	20143408	102400036	25434	-0.1624	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6606	15	20143408	102400036	25421	0.0073	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6607	15	20143408	102400036	25441	-0.2643	NEUTRAL	NA	566	Too-Many
TCGA.AZ.6608	15	20143408	102400036	25418	-0.0346	NEUTRAL	NA	566	Too-Many
TCGA.CA.5255	15	20143408	102400036	25432	-0.0113	NEUTRAL	NA	566	Too-Many
TCGA.CA.5796	15	20143408	102400036	25468	0.0109	NEUTRAL	NA	566	Too-Many
TCGA.CA.5797	15	20143408	102400036	25485	0.0427	NEUTRAL	NA	566	Too-Many
TCGA.CA.6716	15	20143408	102400036	25454	-0.2686	NEUTRAL	NA	566	Too-Many
TCGA.CA.6718	15	20143408	102400036	25427	-0.0044	NEUTRAL	NA	566	Too-Many
TCGA.CI.6619	15	20143408	102400036	25466	-0.1553	NEUTRAL	NA	566	Too-Many
TCGA.CK.4947	15	20143408	102400036	25464	-0.0131	NEUTRAL	NA	566	Too-Many
TCGA.CK.4950	15	20143408	102400036	25264	-0.0396	NEUTRAL	NA	566	Too-Many
TCGA.CK.5912	15	20143408	102400036	25432	-0.1253	NEUTRAL	NA	566	Too-Many
TCGA.CK.5915	15	20143408	102400036	25461	-0.2496	NEUTRAL	NA	566	Too-Many
TCGA.CK.5916	15	20143408	102400036	25451	5.00E-04	NEUTRAL	NA	566	Too-Many
TCGA.CK.6747	15	20143408	102400036	25415	-0.0129	NEUTRAL	NA	566	Too-Many
TCGA.CK.6748	15	20143408	102400036	25466	-0.4335	NEUTRAL	NA	566	Too-Many
TCGA.CK.6751	15	20143408	102400036	25355	6.00E-04	NEUTRAL	NA	566	Too-Many
TCGA.CL.4957	15	20143408	102400036	25507	0.0015	NEUTRAL	NA	566	Too-Many
TCGA.CM.4743	15	20143408	102400036	25502	-0.0213	NEUTRAL	NA	566	Too-Many
TCGA.CM.5349	15	20143408	102400036	25493	0.1057	NEUTRAL	NA	566	Too-Many
TCGA.CM.5860	15	20143408	102400036	25461	-0.0297	NEUTRAL	NA	566	Too-Many
TCGA.CM.5861	15	20143408	102400036	25478	-0.0033	NEUTRAL	NA	566	Too-Many
TCGA.CM.5863	15	20143408	102400036	25468	0.0611	NEUTRAL	NA	566	Too-Many
TCGA.CM.5868	15	20143408	102400036	25463	-0.3413	NEUTRAL	NA	566	Too-Many
TCGA.CM.6161	15	20143408	102400036	25466	0.2772	NEUTRAL	NA	566	Too-Many
TCGA.CM.6162	15	20143408	102400036	25419	-0.0143	NEUTRAL	NA	566	Too-Many
TCGA.CM.6163	15	20143408	102400036	25425	-0.4104	NEUTRAL	NA	566	Too-Many
TCGA.CM.6164	15	20143408	102400036	25473	-0.2102	NEUTRAL	NA	566	Too-Many
TCGA.CM.6166	15	20143408	102400036	25505	-0.0202	NEUTRAL	NA	566	Too-Many
TCGA.CM.6167	15	20143408	102400036	25497	-0.0139	NEUTRAL	NA	566	Too-Many
TCGA.CM.6168	15	20143408	102400036	25498	0.0021	NEUTRAL	NA	566	Too-Many
TCGA.CM.6169	15	20143408	102400036	25333	0.0111	NEUTRAL	NA	566	Too-Many
TCGA.CM.6171	15	20143408	102400036	25509	-0.012	NEUTRAL	NA	566	Too-Many
TCGA.CM.6172	15	20143408	102400036	25514	-0.0029	NEUTRAL	NA	566	Too-Many
TCGA.CM.6674	15	20143408	102400036	25443	-0.0023	NEUTRAL	NA	566	Too-Many
TCGA.CM.6678	15	20143408	102400036	25448	-0.163	NEUTRAL	NA	566	Too-Many
TCGA.CM.6680	15	20143408	102400036	25460	-0.1351	NEUTRAL	NA	566	Too-Many
TCGA.D5.5537	15	20143408	102400036	25442	-1.00E-04	NEUTRAL	NA	566	Too-Many
TCGA.D5.5539	15	20143408	102400036	25479	-0.0495	NEUTRAL	NA	566	Too-Many
TCGA.D5.5540	15	20143408	102400036	25503	-0.0089	NEUTRAL	NA	566	Too-Many
TCGA.D5.5541	15	20143408	102400036	25502	-0.0526	NEUTRAL	NA	566	Too-Many
TCGA.D5.6529	15	20143408	102400036	25507	-0.2365	NEUTRAL	NA	566	Too-Many
TCGA.D5.6530	15	20143408	102400036	25507	-0.0126	NEUTRAL	NA	566	Too-Many
TCGA.D5.6532	15	20143408	102400036	25489	-0.0008	NEUTRAL	NA	566	Too-Many
TCGA.D5.6536	15	20143408	102400036	25504	-0.0477	NEUTRAL	NA	566	Too-Many
TCGA.D5.6537	15	20143408	102400036	25354	-0.0185	NEUTRAL	NA	566	Too-Many
TCGA.D5.6540	15	20143408	102400036	25443	0.0082	NEUTRAL	NA	566	Too-Many
TCGA.D5.6541	15	20143408	102400036	25501	-0.058	NEUTRAL	NA	566	Too-Many
TCGA.D5.6898	15	20143408	102400036	25455	-0.308	NEUTRAL	NA	566	Too-Many
TCGA.D5.6920	15	20143408	102400036	25445	-0.0033	NEUTRAL	NA	566	Too-Many
TCGA.D5.6922	15	20143408	102400036	25439	-0.4168	NEUTRAL	NA	566	Too-Many
TCGA.D5.6924	15	20143408	102400036	25452	-0.0296	NEUTRAL	NA	566	Too-Many
TCGA.D5.6926	15	20143408	102400036	25456	-0.2056	NEUTRAL	NA	566	Too-Many
TCGA.D5.6927	15	20143408	102400036	25456	0.0022	NEUTRAL	NA	566	Too-Many
TCGA.D5.6928	15	20143408	102400036	25454	-0.0148	NEUTRAL	NA	566	Too-Many
TCGA.D5.6930	15	20143408	102400036	25445	0.0019	NEUTRAL	NA	566	Too-Many
TCGA.D5.6931	15	20143408	102400036	25441	-0.0014	NEUTRAL	NA	566	Too-Many
TCGA.D5.7000	15	20143408	102400036	25389	-0.0033	NEUTRAL	NA	566	Too-Many
TCGA.DC.4749	15	20143408	102400036	25512	-0.0157	NEUTRAL	NA	566	Too-Many
TCGA.DC.5869	15	20143408	102400036	25431	-0.2417	NEUTRAL	NA	566	Too-Many
TCGA.DC.6154	15	20143408	102400036	25455	-0.0364	NEUTRAL	NA	566	Too-Many
TCGA.DC.6155	15	20143408	102400036	25380	-0.4033	NEUTRAL	NA	566	Too-Many
TCGA.DC.6157	15	20143408	102400036	25260	-0.4093	NEUTRAL	NA	566	Too-Many
TCGA.DC.6158	15	20143408	102400036	25423	-0.0795	NEUTRAL	NA	566	Too-Many
TCGA.DC.6682	15	20143408	102400036	25468	-0.1526	NEUTRAL	NA	566	Too-Many
TCGA.DM.A0X9	15	20143408	102400036	25494	-0.009	NEUTRAL	NA	566	Too-Many
TCGA.DM.A0XD	15	20143408	102400036	25418	-0.0038	NEUTRAL	NA	566	Too-Many
TCGA.DM.A0XF	15	20143408	102400036	25501	-0.049	NEUTRAL	NA	566	Too-Many
TCGA.DM.A1D7	15	20143408	102400036	25507	-0.19	NEUTRAL	NA	566	Too-Many
TCGA.DM.A1D8	15	20143408	102400036	25471	-0.4596	NEUTRAL	NA	566	Too-Many
TCGA.DM.A1DA	15	20143408	102400036	25490	-0.1395	NEUTRAL	NA	566	Too-Many
TCGA.DM.A1HB	15	20143408	102400036	24920	0.0142	NEUTRAL	NA	566	Too-Many
TCGA.DM.A280	15	20143408	102400036	25448	0.0015	NEUTRAL	NA	566	Too-Many
TCGA.DM.A28C	15	20143408	102400036	25468	-0.0132	NEUTRAL	NA	566	Too-Many
TCGA.DM.A28E	15	20143408	102400036	25430	0.0046	NEUTRAL	NA	566	Too-Many
TCGA.DM.A28G	15	20143408	102400036	25466	0.0039	NEUTRAL	NA	566	Too-Many
TCGA.DM.A28H	15	20143408	102400036	25457	0.0101	NEUTRAL	NA	566	Too-Many
TCGA.DM.A28K	15	20143408	102400036	25432	0.0049	NEUTRAL	NA	566	Too-Many
TCGA.DT.5265	15	20143408	102400036	25468	0.0597	NEUTRAL	NA	566	Too-Many
TCGA.DY.A1H8	15	20143408	102400036	25503	0.0071	NEUTRAL	NA	566	Too-Many
TCGA.EI.6507	15	20143408	102400036	25497	0.0013	NEUTRAL	NA	566	Too-Many
TCGA.EI.6509	15	20143408	102400036	25511	0.0009	NEUTRAL	NA	566	Too-Many
TCGA.EI.6510	15	20143408	102400036	25464	0.0043	NEUTRAL	NA	566	Too-Many
TCGA.EI.6512	15	20143408	102400036	25509	-0.0167	NEUTRAL	NA	566	Too-Many
TCGA.EI.6514	15	20143408	102400036	25467	-0.5119	NEUTRAL	NA	566	Too-Many
TCGA.EI.6884	15	20143408	102400036	25429	-0.2821	NEUTRAL	NA	566	Too-Many
TCGA.EI.6885	15	20143408	102400036	25449	-0.3185	NEUTRAL	NA	566	Too-Many
TCGA.EI.6917	15	20143408	102400036	25434	-0.0233	NEUTRAL	NA	566	Too-Many
TCGA.EI.7004	15	20143408	102400036	25448	0.2863	NEUTRAL	NA	566	Too-Many
TCGA.F4.6459	15	20143408	102400036	25509	-0.0272	NEUTRAL	NA	566	Too-Many
TCGA.F4.6460	15	20143408	102400036	25510	-0.3222	NEUTRAL	NA	566	Too-Many
TCGA.F4.6463	15	20143408	102400036	25504	-0.0205	NEUTRAL	NA	566	Too-Many
TCGA.F4.6569	15	20143408	102400036	25513	-0.0116	NEUTRAL	NA	566	Too-Many
TCGA.F4.6703	15	20143408	102400036	25459	-0.1265	NEUTRAL	NA	566	Too-Many
TCGA.F4.6704	15	20143408	102400036	25464	-0.3236	NEUTRAL	NA	566	Too-Many
TCGA.F4.6805	15	20143408	102400036	25459	-0.0018	NEUTRAL	NA	566	Too-Many
TCGA.F4.6807	15	20143408	102400036	25435	-0.4698	NEUTRAL	NA	566	Too-Many
TCGA.F4.6809	15	20143408	102400036	25453	-0.4343	NEUTRAL	NA	566	Too-Many
TCGA.F4.6855	15	20143408	102400036	25435	-0.3906	NEUTRAL	NA	566	Too-Many
TCGA.F4.6856	15	20143408	102400036	25460	0.0087	NEUTRAL	NA	566	Too-Many
TCGA.F5.6464	15	20143408	102400036	25513	0.1133	NEUTRAL	NA	566	Too-Many
TCGA.F5.6465	15	20143408	102400036	25514	-0.0189	NEUTRAL	NA	566	Too-Many
TCGA.F5.6702	15	20143408	102400036	25387	-0.1399	NEUTRAL	NA	566	Too-Many
TCGA.F5.6810	15	20143408	102400036	25463	-0.0567	NEUTRAL	NA	566	Too-Many
TCGA.F5.6814	15	20143408	102400036	25455	-0.0184	NEUTRAL	NA	566	Too-Many
TCGA.F5.6861	15	20143408	102400036	25439	0.0038	NEUTRAL	NA	566	Too-Many
TCGA.F5.6863	15	20143408	102400036	25457	0.0419	NEUTRAL	NA	566	Too-Many
TCGA.G4.6293	15	20143408	102400036	25487	-0.0167	NEUTRAL	NA	566	Too-Many
TCGA.G4.6295	15	20143408	102400036	25510	-0.3917	NEUTRAL	NA	566	Too-Many
TCGA.G4.6297	15	20143408	102400036	25500	0.1168	NEUTRAL	NA	566	Too-Many
TCGA.G4.6298	15	20143408	102400036	25501	-0.0025	NEUTRAL	NA	566	Too-Many
TCGA.G4.6302	15	20143408	102400036	25502	-0.0214	NEUTRAL	NA	566	Too-Many
TCGA.G4.6304	15	20143408	102400036	25459	-0.0064	NEUTRAL	NA	566	Too-Many
TCGA.G4.6306	15	20143408	102400036	25493	-0.0288	NEUTRAL	NA	566	Too-Many
TCGA.G4.6307	15	20143408	102400036	25507	-0.4202	NEUTRAL	NA	566	Too-Many
TCGA.G4.6309	15	20143408	102400036	25463	0.0069	NEUTRAL	NA	566	Too-Many
TCGA.G4.6311	15	20143408	102400036	25506	-0.0141	NEUTRAL	NA	566	Too-Many
TCGA.G4.6314	15	20143408	102400036	25501	-0.0058	NEUTRAL	NA	566	Too-Many
TCGA.G4.6315	15	20143408	102400036	25507	-0.1834	NEUTRAL	NA	566	Too-Many
TCGA.G4.6320	15	20143408	102400036	25509	0.0079	NEUTRAL	NA	566	Too-Many
TCGA.G4.6321	15	20143408	102400036	25503	-0.001	NEUTRAL	NA	566	Too-Many
TCGA.G4.6323	15	20143408	102400036	25508	-0.0042	NEUTRAL	NA	566	Too-Many
TCGA.G4.6588	15	20143408	102400036	25505	-0.0074	NEUTRAL	NA	566	Too-Many
TCGA.G4.6625	15	20143408	102400036	25510	-0.2093	NEUTRAL	NA	566	Too-Many
TCGA.G4.6628	15	20143408	102400036	25452	0.0087	NEUTRAL	NA	566	Too-Many
TCGA.G5.6235	15	20143408	102400036	25516	-0.0026	NEUTRAL	NA	566	Too-Many
TCGA.G5.6572	15	20143408	102400036	25445	-0.0022	NEUTRAL	NA	566	Too-Many
TCGA.G5.6641	15	20143408	102400036	25449	-0.1809	NEUTRAL	NA	566	Too-Many
TCGA.NH.A50T	15	20143408	102400036	25324	-0.0087	NEUTRAL	NA	566	Too-Many
TCGA.NH.A5IV	15	20143408	102400036	25466	0.0197	NEUTRAL	NA	566	Too-Many
TCGA.NH.A6GC	15	20143408	102400036	25474	-0.4951	NEUTRAL	NA	566	Too-Many
TCGA.NH.A8F8	15	20143408	102400036	25505	-0.0002	NEUTRAL	NA	566	Too-Many
TCGA.QG.A5YV	15	20143408	102400036	25323	-0.0149	NEUTRAL	NA	566	Too-Many
TCGA.QG.A5YW	15	20143408	102400036	25352	-0.508	NEUTRAL	NA	566	Too-Many
TCGA.QG.A5YX	15	20143408	102400036	25265	-0.0408	NEUTRAL	NA	566	Too-Many
TCGA.QG.A5Z2	15	20143408	102400036	25286	-0.0139	NEUTRAL	NA	566	Too-Many
TCGA.WS.AB45	15	20143408	102400036	25487	-0.0013	NEUTRAL	NA	566	Too-Many
TCGA.A6.6780	15	20143650	20192010	5	-0.0092	NEUTRAL	NA	0	None
TCGA.AH.6903	15	20143650	20549877	6	0.2144	NEUTRAL	NA	0	None
TCGA.F4.6570	15	20143650	20573343	9	0.0265	NEUTRAL	NA	0	None
TCGA.AA.A022	15	20143650	22582901	17	0.1499	NEUTRAL	NA	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.3502	15	20143650	30369913	2205	-0.0334	NEUTRAL	NA	31	"APBA2,ATP10A,CYFIP1,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TJP1,TUBGCP5,UBE3A"
TCGA.AA.3977	15	20143650	33282843	2858	0.0499	NEUTRAL	NA	50	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,CYFIP1,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,OTUD7A,POTEB,POTEB2,POTEB3,SCG5,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.A6.2671	15	20143650	33553752	3004	0.0318	NEUTRAL	NA	50	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,CYFIP1,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,OTUD7A,POTEB,POTEB2,POTEB3,SCG5,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.D5.6923	15	20143650	34719934	3544	-0.0748	NEUTRAL	NA	62	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.A6.2686	15	20143650	48038763	7399	-0.0065	NEUTRAL	NA	189	Too-Many
TCGA.CM.4752	15	20143650	55135961	9753	-0.2734	NEUTRAL	NA	232	Too-Many
TCGA.CM.6679	15	20143650	55135961	9729	-0.17195	NEUTRAL	NA	232	Too-Many
TCGA.CA.6715	15	20143650	71901444	15417	0.0021	NEUTRAL	NA	349	Too-Many
TCGA.AA.3517	15	20143650	85531520	18672	0.0011	NEUTRAL	NA	487	Too-Many
TCGA.AA.A01R	15	20143650	98627682	23937	-0.0009	NEUTRAL	NA	544	Too-Many
TCGA.AG.A01Y	15	20143650	100244592	24513	-0.0139	NEUTRAL	NA	551	Too-Many
TCGA.A6.2679	15	20143650	102400036	25481	-0.3168	NEUTRAL	NA	566	Too-Many
TCGA.A6.2680	15	20143650	102400036	25462	-0.0155	NEUTRAL	NA	566	Too-Many
TCGA.A6.2682	15	20143650	102400036	25040	-0.0132	NEUTRAL	NA	566	Too-Many
TCGA.A6.2685	15	20143650	102400036	25442	-0.0091	NEUTRAL	NA	566	Too-Many
TCGA.A6.4107	15	20143650	102400036	25488	-0.4242	NEUTRAL	NA	566	Too-Many
TCGA.AA.3492	15	20143650	102400036	25490	-0.0039	NEUTRAL	NA	566	Too-Many
TCGA.AA.3494	15	20143650	102400036	25494	-0.4757	NEUTRAL	NA	566	Too-Many
TCGA.AA.3495	15	20143650	102400036	25492	-0.0075	NEUTRAL	NA	566	Too-Many
TCGA.AA.3510	15	20143650	102400036	25484	-0.0116	NEUTRAL	NA	566	Too-Many
TCGA.AA.3663	15	20143650	102400036	25470	0	NEUTRAL	NA	566	Too-Many
TCGA.AA.3845	15	20143650	102400036	25476	0.0169	NEUTRAL	NA	566	Too-Many
TCGA.AA.3950	15	20143650	102400036	25489	0.025	NEUTRAL	NA	566	Too-Many
TCGA.AA.A01P	15	20143650	102400036	25470	0.0001	NEUTRAL	NA	566	Too-Many
TCGA.AA.A01S	15	20143650	102400036	25492	0.00755	NEUTRAL	NA	566	Too-Many
TCGA.AA.A01V	15	20143650	102400036	25491	0.0194	NEUTRAL	NA	566	Too-Many
TCGA.AA.A01X	15	20143650	102400036	25455	-0.3664	NEUTRAL	NA	566	Too-Many
TCGA.AA.A02O	15	20143650	102400036	25492	0.0014	NEUTRAL	NA	566	Too-Many
TCGA.AA.A02Y	15	20143650	102400036	25485	0.0088	NEUTRAL	NA	566	Too-Many
TCGA.AA.A03F	15	20143650	102400036	25491	0.0028	NEUTRAL	NA	566	Too-Many
TCGA.AA.A03J	15	20143650	102400036	24936	0.0095	NEUTRAL	NA	566	Too-Many
TCGA.AD.A5EK	15	20143650	102400036	25327	0	NEUTRAL	NA	566	Too-Many
TCGA.AG.3598	15	20143650	102400036	25441	-0.0034	NEUTRAL	NA	566	Too-Many
TCGA.AG.3890	15	20143650	102400036	25421	-0.2532	NEUTRAL	NA	566	Too-Many
TCGA.AU.6004	15	20143650	102400036	25361	-0.0237	NEUTRAL	NA	566	Too-Many
TCGA.AZ.4308	15	20143650	102400036	25497	-0.0113	NEUTRAL	NA	566	Too-Many
TCGA.AZ.4315	15	20143650	102400036	25480	-0.013	NEUTRAL	NA	566	Too-Many
TCGA.AZ.4614	15	20143650	102400036	25208	0.098	NEUTRAL	NA	566	Too-Many
TCGA.AZ.4615	15	20143650	102400036	25476	0.0114	NEUTRAL	NA	566	Too-Many
TCGA.AZ.4682	15	20143650	102400036	25496	-0.015	NEUTRAL	NA	566	Too-Many
TCGA.CA.5256	15	20143650	102400036	25301	-0.3162	NEUTRAL	NA	566	Too-Many
TCGA.CI.6621	15	20143650	102400036	25456	-0.2605	NEUTRAL	NA	566	Too-Many
TCGA.CK.4951	15	20143650	102400036	25398	-0.0062	NEUTRAL	NA	566	Too-Many
TCGA.CM.4746	15	20143650	102400036	25487	-0.0124	NEUTRAL	NA	566	Too-Many
TCGA.CM.4747	15	20143650	102400036	25484	-0.4299	NEUTRAL	NA	566	Too-Many
TCGA.CM.4748	15	20143650	102400036	25493	-0.0141	NEUTRAL	NA	566	Too-Many
TCGA.CM.6676	15	20143650	102400036	25419	-0.216	NEUTRAL	NA	566	Too-Many
TCGA.G4.6586	15	20143650	102400036	25510	-0.0143	NEUTRAL	NA	566	Too-Many
TCGA.AA.A02K.01A	15	20169869	28493647	241	0.3185	NEUTRAL	NA	26	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,HERC2,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AG.3883	15	20180944	97566853	23613	0.0183	NEUTRAL	NA	543	Too-Many
TCGA.CM.5344	15	20180944	102400036	25492	0.0342	NEUTRAL	NA	566	Too-Many
TCGA.G4.6310	15	20549877	70827350	15169	-0.1085	NEUTRAL	NA	343	Too-Many
TCGA.DC.5337	15	20549877	102400036	25383	-0.0055	NEUTRAL	NA	566	Too-Many
TCGA.EI.6508	15	20573343	47513252	7153	0.0011	NEUTRAL	NA	189	Too-Many
TCGA.AF.3914.01A	15	20588543	21051245	13	0.2216	NEUTRAL	NA	4	"GOLGA6L6,POTEB,POTEB2,POTEB3"
TCGA.AA.A00D.01A	15	20588543	22413660	5	-0.4131	NEUTRAL	NA	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AG.3891.01A	15	20588543	22413660	17	-0.3622	NEUTRAL	NA	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.CK.5914.01A	15	20588543	22833478	19	0.2838	NEUTRAL	NA	9	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.A00A.01A	15	20588543	22835844	5	0.0707	NEUTRAL	NA	9	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AG.3909.01A	15	20588543	22869863	35	-0.3921	NEUTRAL	NA	9	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AG.A023.01A	15	20588543	22925745	36	-0.2476	NEUTRAL	NA	10	"CYFIP1,GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.A01K.01A	15	20588543	22998390	57	-0.3417	NEUTRAL	NA	10	"CYFIP1,GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.A01Q.01A	15	20588543	23062209	60	-0.1874	NEUTRAL	NA	12	"CYFIP1,GOLGA6L1,GOLGA6L22,GOLGA6L6,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AG.A00C.01A	15	20588543	25200104	85	0.1092	NEUTRAL	NA	19	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5"
TCGA.AG.3611.01A	15	20588543	26107748	99	0.1095	NEUTRAL	NA	21	"ATP10A,CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AA.3861.01A	15	20588543	28370102	178	0.097	NEUTRAL	NA	26	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,HERC2,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AA.3862.01A	15	20588543	28370102	179	-0.1592	NEUTRAL	NA	26	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,HERC2,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AA.3930.01A	15	20588543	29386407	249	-0.0879	NEUTRAL	NA	28	"APBA2,ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AA.A01I.01A	15	20588543	29993759	258	-0.1756	NEUTRAL	NA	31	"APBA2,ATP10A,CYFIP1,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TJP1,TUBGCP5,UBE3A"
TCGA.AG.A015.01A	15	20588543	34118816	477	-0.1221	NEUTRAL	NA	51	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,CYFIP1,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,OTUD7A,POTEB,POTEB2,POTEB3,RYR3,SCG5,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AA.3509.01A	15	20588543	35256362	651	-0.1177	NEUTRAL	NA	66	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AA.A01F.01A	15	20588543	35673989	369	-0.2564	NEUTRAL	NA	68	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.A00K.01A	15	20588543	41339555	605	0.2804	NEUTRAL	NA	111	Too-Many
TCGA.A6.3810.01A	15	20588543	41828647	1145	-0.2954	NEUTRAL	NA	120	Too-Many
TCGA.AA.A02R.01A	15	20588543	42103348	1071	-0.0859	NEUTRAL	NA	123	Too-Many
TCGA.AG.A02G.01A	15	20588543	42146928	1155	-0.4603	NEUTRAL	NA	127	Too-Many
TCGA.AA.A02F.01A	15	20588543	43020101	1247	-0.0042	NEUTRAL	NA	141	Too-Many
TCGA.AA.3980.01A	15	20588543	43831617	1668	-0.4908	NEUTRAL	NA	155	Too-Many
TCGA.AH.6549.01A	15	20588543	43888016	1694	-0.4176	NEUTRAL	NA	156	Too-Many
TCGA.AG.A011.01A	15	20588543	43927253	1561	-0.286	NEUTRAL	NA	158	Too-Many
TCGA.AG.A016.01A	15	20588543	45398993	1772	-0.0985	NEUTRAL	NA	177	Too-Many
TCGA.AG.A025.01A	15	20588543	45562381	1854	-0.1749	NEUTRAL	NA	182	Too-Many
TCGA.AA.3939.01A	15	20588543	62176289	3063	-0.2072	NEUTRAL	NA	270	Too-Many
TCGA.AG.A01N.01A	15	20588543	101427737	5587	-0.2268	NEUTRAL	NA	557	Too-Many
TCGA.AA.A01D.01A	15	20588543	102358378	5402	-0.0758	NEUTRAL	NA	565	Too-Many
TCGA.AA.3815.01A	15	20588543	102462347	6021	0.0076	NEUTRAL	NA	567	Too-Many
TCGA.AA.A004.01A	15	20588543	102462347	5418	-0.0947	NEUTRAL	NA	567	Too-Many
TCGA.AA.A00J.01A	15	20588543	102462347	4463	0.0736	NEUTRAL	NA	567	Too-Many
TCGA.AA.A00O.01A	15	20588543	102462347	5538	-0.0561	NEUTRAL	NA	567	Too-Many
TCGA.AA.A017.01A	15	20588543	102462347	5513	-0.4825	NEUTRAL	NA	567	Too-Many
TCGA.AA.A01C.01A	15	20588543	102462347	5676	-0.279	NEUTRAL	NA	567	Too-Many
TCGA.AA.A024.01A	15	20588543	102462347	5839	0.0092	NEUTRAL	NA	567	Too-Many
TCGA.AA.A029.01A	15	20588543	102462347	5493	-0.2432	NEUTRAL	NA	567	Too-Many
TCGA.AA.A02E.01A	15	20588543	102462347	5569	-0.2926	NEUTRAL	NA	567	Too-Many
TCGA.AA.A02J.01A	15	20588543	102462347	5390	-0.059	NEUTRAL	NA	567	Too-Many
TCGA.AA.A02W.01A	15	20588543	102462347	5597	-0.2859	NEUTRAL	NA	567	Too-Many
TCGA.AG.A008.01A	15	20588543	102462347	5781	-0.2262	NEUTRAL	NA	567	Too-Many
TCGA.AG.A00H.01A	15	20588543	102462347	5617	-0.4127	NEUTRAL	NA	567	Too-Many
TCGA.AG.A014.01A	15	20588543	102462347	5656	-0.0786	NEUTRAL	NA	567	Too-Many
TCGA.AG.A01J.01A	15	20588543	102462347	5571	-0.4392	NEUTRAL	NA	567	Too-Many
TCGA.AG.A01L.01A	15	20588543	102462347	5698	-0.0948	NEUTRAL	NA	567	Too-Many
TCGA.AG.A032.01A	15	20588543	102462347	5551	-0.4427	NEUTRAL	NA	567	Too-Many
TCGA.AY.A54L.01A	15	20588543	102462347	6154	-0.0949	NEUTRAL	NA	567	Too-Many
TCGA.CM.4744.01A	15	20588543	102462347	6158	-0.0664	NEUTRAL	NA	567	Too-Many
TCGA.CM.4750.01A	15	20588543	102462347	6158	0.0298	NEUTRAL	NA	567	Too-Many
TCGA.DM.A282.01A	15	20588543	102462347	6145	-0.0084	NEUTRAL	NA	567	Too-Many
TCGA.AA.A02H.01A	15	20643883	40661002	809	-0.0586	NEUTRAL	NA	91	"ACTC1,ANKRD63,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DISP2,DPH6,EIF2AK4,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,HERC2,INAFM2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PAK6,PGBD4,PHGR1,PLCB2,POTEB,POTEB2,POTEB3,RASGRP1,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AG.3906.01A	15	20662885	23931981	72	-0.0282	NEUTRAL	NA	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AG.4009.01A	15	20666513	22928080	29	-0.2988	NEUTRAL	NA	10	"CYFIP1,GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.A010.01A	15	20740049	22833478	7	-0.4476	NEUTRAL	NA	9	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AF.3914.01A	15	21063473	22850870	14	-0.3518	NEUTRAL	NA	8	"GOLGA6L1,GOLGA6L22,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AG.A01W.01A	15	21482521	39063214	927	0.3631	NEUTRAL	NA	74	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,C15orf53,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RASGRP1,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.G4.6299	15	21909390	57618846	10340	-0.03	NEUTRAL	NA	246	Too-Many
TCGA.NH.A6GA	15	22410342	25427207	610	0.0187	NEUTRAL	NA	13	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,SNRPN,SNURF,TUBGCP5"
TCGA.AG.3605.01A	15	22413660	90903778	116	-0.2578	NEUTRAL	NA	516	Too-Many
TCGA.AA.A00Z.01A	15	22413660	92669251	104	-0.332	NEUTRAL	NA	529	Too-Many
TCGA.DC.6683	15	22422347	24372611	362	-0.3369	NEUTRAL	NA	10	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,TUBGCP5"
TCGA.AA.3831	15	22558424	102400036	25478	-0.0206	NEUTRAL	NA	560	Too-Many
TCGA.NH.A6GB	15	22558424	102400036	25483	-0.0379	NEUTRAL	NA	560	Too-Many
TCGA.EI.6513	15	22560361	23226467	91	-0.0044	NEUTRAL	NA	6	"CYFIP1,GOLGA6L1,GOLGA6L22,NIPA1,NIPA2,TUBGCP5"
TCGA.DY.A1DF	15	22765682	23226467	86	0.3451	NEUTRAL	NA	4	"CYFIP1,NIPA1,NIPA2,TUBGCP5"
TCGA.A6.6138	15	22765682	24376621	364	-0.5108	NEUTRAL	NA	9	"CYFIP1,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,TUBGCP5"
TCGA.EI.7002	15	22765682	25417123	605	-0.2453	NEUTRAL	NA	12	"CYFIP1,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,SNRPN,SNURF,TUBGCP5"
TCGA.AA.3532	15	22765682	27890490	1581	-0.3002	NEUTRAL	NA	17	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.AG.3584	15	22765682	30239088	2147	-0.0806	NEUTRAL	NA	24	"APBA2,ATP10A,CYFIP1,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,SNRPN,SNURF,TJP1,TUBGCP5,UBE3A"
TCGA.CK.6746	15	22765682	30369913	2181	-0.0392	NEUTRAL	NA	24	"APBA2,ATP10A,CYFIP1,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,GOLGA8M,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,SNRPN,SNURF,TJP1,TUBGCP5,UBE3A"
TCGA.AA.A01Z	15	22765682	31699839	2408	-0.0318	NEUTRAL	NA	34	"APBA2,ARHGAP11B,ATP10A,CHRFAM7A,CYFIP1,FAM189A1,FAN1,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,KLF13,LOC283710,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AA.3667	15	22765682	39448233	5259	-0.0746	NEUTRAL	NA	68	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,C15orf53,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L2,GOLGA6L22,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OTUD7A,PGBD4,RASGRP1,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AF.2689	15	22765682	63042260	12811	-0.0173	NEUTRAL	NA	266	Too-Many
TCGA.AA.3854	15	22765682	66136683	13569	-0.3165	NEUTRAL	NA	306	Too-Many
TCGA.SS.A7HO	15	22765682	66720725	13751	0.0366	NEUTRAL	NA	311	Too-Many
TCGA.NH.A50U	15	22765682	67347685	14033	-0.3424	NEUTRAL	NA	316	Too-Many
TCGA.NH.A8F7	15	22765682	100541775	24591	0.0002	NEUTRAL	NA	546	Too-Many
TCGA.A6.2681	15	22765682	102400036	25475	-0.4888	NEUTRAL	NA	559	Too-Many
TCGA.A6.3809	15	22765682	102400036	23487	-0.0068	NEUTRAL	NA	559	Too-Many
TCGA.A6.6650	15	22765682	102400036	23458	-0.4709	NEUTRAL	NA	559	Too-Many
TCGA.AA.3952	15	22765682	102400036	25477	0.0479	NEUTRAL	NA	559	Too-Many
TCGA.AH.6644	15	22765682	102400036	25429	-0.0217	NEUTRAL	NA	559	Too-Many
TCGA.AH.6903	15	22765682	102400036	25436	0	NEUTRAL	NA	559	Too-Many
TCGA.CI.6624	15	22765682	102400036	25431	-0.0632	NEUTRAL	NA	559	Too-Many
TCGA.F4.6570	15	22765682	102400036	25493	-0.013	NEUTRAL	NA	559	Too-Many
TCGA.F4.6806	15	22765682	102400036	25377	-0.0144	NEUTRAL	NA	559	Too-Many
TCGA.DM.A28A	15	22766684	62452241	12544	-0.0515	NEUTRAL	NA	264	Too-Many
TCGA.CA.6717	15	22766684	102400036	25390	-0.0054	NEUTRAL	NA	559	Too-Many
TCGA.D5.6534	15	22766820	102400036	25416	0.0417	NEUTRAL	NA	559	Too-Many
TCGA.CK.4948.01B	15	22833478	48056000	2040	-0.2032	NEUTRAL	NA	182	Too-Many
TCGA.AG.3891.01A	15	22835844	22939124	27	0.123	NEUTRAL	NA	2	"CYFIP1,TUBGCP5"
TCGA.AA.A00D.01A	15	22835844	41508854	629	0.1008	NEUTRAL	NA	105	Too-Many
TCGA.CK.5914.01A	15	22853687	22869863	9	-0.1444	NEUTRAL	NA	1	TUBGCP5
TCGA.AF.3914.01A	15	22853687	23810898	51	0.2769	NEUTRAL	NA	7	"CYFIP1,GOLGA6L2,GOLGA6L22,MKRN3,NIPA1,NIPA2,TUBGCP5"
TCGA.AG.4009.01A	15	22928382	23261002	36	0.2314	NEUTRAL	NA	3	"CYFIP1,NIPA1,NIPA2"
TCGA.AA.A00Q.01A	15	22940681	25958814	59	0.3179	NEUTRAL	NA	13	"ATP10A,CYFIP1,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,SNRPN,SNURF,UBE3A"
TCGA.AG.3891.01A	15	22940681	28277162	123	-0.1405	NEUTRAL	NA	17	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OCA2,SNRPN,SNURF,UBE3A"
TCGA.AG.A02X.01A	15	22997736	42371688	1134	-0.2854	NEUTRAL	NA	122	Too-Many
TCGA.AG.A023.01A	15	22997736	102462347	5511	-0.1	NEUTRAL	NA	559	Too-Many
TCGA.AA.A01K.01A	15	23002839	28200266	85	-0.2867	NEUTRAL	NA	17	"ATP10A,CYFIP1,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OCA2,SNRPN,SNURF,UBE3A"
TCGA.AA.A010.01A	15	23060764	23810898	6	-0.0706	NEUTRAL	NA	4	"GOLGA6L2,GOLGA6L22,MKRN3,NIPA1"
TCGA.CM.5862	15	23226467	102400036	25340	-0.1803	NEUTRAL	NA	555	Too-Many
TCGA.AA.3941	15	23744171	24288323	228	0.3752	NEUTRAL	NA	3	"MAGEL2,MKRN3,NDN"
TCGA.AA.A00L.01A	15	23810898	24924458	6	-0.4672	NEUTRAL	NA	4	"MAGEL2,MKRN3,NDN,NPAP1"
TCGA.AA.A01Q.01A	15	23810898	25620601	20	0.1349	NEUTRAL	NA	7	"MAGEL2,MKRN3,NDN,NPAP1,SNRPN,SNURF,UBE3A"
TCGA.CL.5917	15	23877410	102400036	25251	-0.0459	NEUTRAL	NA	552	Too-Many
TCGA.AF.3911	15	24208909	34719934	3227	-0.5022	NEUTRAL	NA	46	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA8A,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MTMR10,NDNL2,NOP10,NPAP1,NUTM1,OCA2,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,UBE3A"
TCGA.AA.3697	15	24208909	63995422	12876	-0.4761	NEUTRAL	NA	266	Too-Many
TCGA.AA.3941	15	24296571	24386622	29	0	NEUTRAL	NA	0	None
TCGA.D5.6535	15	24454385	47518806	6773	-0.3397	NEUTRAL	NA	173	Too-Many
TCGA.AZ.5403	15	24457586	102400036	25076	-0.2473	NEUTRAL	NA	550	Too-Many
TCGA.AA.3941	15	24503659	25385656	209	0.2776	NEUTRAL	NA	3	"NPAP1,SNRPN,SNURF"
TCGA.CL.5918	15	24731871	85083605	18131	-0.4403	NEUTRAL	NA	463	Too-Many
TCGA.DC.6683	15	24809849	68029179	13763	-0.3303	NEUTRAL	NA	312	Too-Many
TCGA.CK.5914.01A	15	25200104	28459799	136	-0.2652	NEUTRAL	NA	9	"ATP10A,GABRA5,GABRB3,GABRG3,HERC2,OCA2,SNRPN,SNURF,UBE3A"
TCGA.AF.3914.01A	15	25200104	34634151	480	0.1193	NEUTRAL	NA	42	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,MTMR10,NDNL2,NOP10,OCA2,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,UBE3A"
TCGA.AG.4009.01A	15	25207211	26866422	44	0.067	NEUTRAL	NA	5	"ATP10A,GABRB3,SNRPN,SNURF,UBE3A"
TCGA.AG.A00C.01A	15	25207211	26866422	43	-0.2494	NEUTRAL	NA	5	"ATP10A,GABRB3,SNRPN,SNURF,UBE3A"
TCGA.A6.3808.01A	15	25220476	28267586	81	1.00E-04	NEUTRAL	NA	8	"ATP10A,GABRA5,GABRB3,GABRG3,OCA2,SNRPN,SNURF,UBE3A"
TCGA.DY.A0XA	15	25380655	26219568	359	-0.033	NEUTRAL	NA	2	"ATP10A,UBE3A"
TCGA.AA.3844	15	25415167	33390189	2291	-0.0607	NEUTRAL	NA	31	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MTMR10,NDNL2,OCA2,OTUD7A,SCG5,TJP1,TRPM1,UBE3A"
TCGA.AA.3989	15	25415167	54506144	8891	0.0159	NEUTRAL	NA	213	Too-Many
TCGA.NH.A6GA	15	25430080	25486616	21	-0.3693	NEUTRAL	NA	0	None
TCGA.EI.7002	15	25433304	102400036	24830	-0.2928	NEUTRAL	NA	547	Too-Many
TCGA.BM.6198	15	25460965	81014620	17107	-0.44305	NEUTRAL	NA	432	Too-Many
TCGA.NH.A6GA	15	25489375	27918622	969	-0.042	NEUTRAL	NA	5	"ATP10A,GABRA5,GABRB3,GABRG3,UBE3A"
TCGA.AA.A01Q.01A	15	25650538	26107748	20	-0.338	NEUTRAL	NA	2	"ATP10A,UBE3A"
TCGA.EI.6506	15	25673815	25696529	7	-0.4667	NEUTRAL	NA	1	UBE3A
TCGA.EI.6506	15	25718874	25777256	31	-0.3941	NEUTRAL	NA	0	None
TCGA.EI.6506	15	25781674	102400036	24748	-0.0023	NEUTRAL	NA	546	Too-Many
TCGA.CM.5348	15	25826063	31177475	1466	-0.0261	NEUTRAL	NA	16	"APBA2,ARHGAP11B,ATP10A,CHRFAM7A,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,NDNL2,OCA2,TJP1"
TCGA.AA.A00Q.01A	15	25961839	26107748	9	-0.0842	NEUTRAL	NA	1	ATP10A
TCGA.EI.6513	15	26053437	26054924	4	-0.4614	NEUTRAL	NA	1	ATP10A
TCGA.DM.A285	15	26153908	102400036	24512	-0.2357	NEUTRAL	NA	545	Too-Many
TCGA.A6.5656	15	26621228	26719238	55	-0.1021	NEUTRAL	NA	0	None
TCGA.DY.A0XA	15	26766745	27431956	231	-0.0234	NEUTRAL	NA	3	"GABRA5,GABRB3,GABRG3"
TCGA.AA.A01Q.01A	15	26792950	28259934	28	0.2196	NEUTRAL	NA	4	"GABRA5,GABRB3,GABRG3,OCA2"
TCGA.AG.3611.01A	15	26792950	30663248	119	-0.3333	NEUTRAL	NA	12	"APBA2,CHRFAM7A,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA8J,GOLGA8M,HERC2,NDNL2,OCA2,TJP1"
TCGA.AA.A00N.01A	15	26866422	28388967	65	-0.3557	NEUTRAL	NA	5	"GABRA5,GABRB3,GABRG3,HERC2,OCA2"
TCGA.AG.4008	15	26950086	102400036	24085	-0.3624	NEUTRAL	NA	545	Too-Many
TCGA.A6.5656	15	26996980	27538885	193	0.0232	NEUTRAL	NA	3	"GABRA5,GABRB3,GABRG3"
TCGA.AG.A00C.01A	15	27114342	28397794	62	0.0201	NEUTRAL	NA	4	"GABRA5,GABRG3,HERC2,OCA2"
TCGA.AG.4009.01A	15	27159894	28277162	36	-0.0871	NEUTRAL	NA	3	"GABRA5,GABRG3,OCA2"
TCGA.DY.A0XA	15	27496342	53704580	7678	0.0111	NEUTRAL	NA	207	Too-Many
TCGA.AA.3488	15	27793836	102400036	23961	-0.4454	NEUTRAL	NA	542	Too-Many
TCGA.NH.A6GA	15	27928793	102400036	23866	0.0198	NEUTRAL	NA	542	Too-Many
TCGA.AA.3532	15	28031517	44851243	4757	-0.0446	NEUTRAL	NA	146	Too-Many
TCGA.AA.A01K.01A	15	28228454	45713193	1650	-0.2046	NEUTRAL	NA	160	Too-Many
TCGA.AA.A01Q.01A	15	28261201	28375617	19	-0.2964	NEUTRAL	NA	2	"HERC2,OCA2"
TCGA.AG.3891.01A	15	28366447	29385249	76	-0.3186	NEUTRAL	NA	3	"APBA2,GOLGA8M,HERC2"
TCGA.AG.4009.01A	15	28369132	34553073	381	0.0632	NEUTRAL	NA	33	"APBA2,ARHGAP11A,ARHGAP11B,AVEN,CHRFAM7A,CHRM5,CHRNA7,EMC4,EMC7,FAM189A1,FAN1,FMN1,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,MTMR10,NDNL2,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,TJP1,TRPM1"
TCGA.AA.A01Q.01A	15	28377218	34628572	202	0.1969	NEUTRAL	NA	33	"APBA2,ARHGAP11A,ARHGAP11B,AVEN,CHRFAM7A,CHRM5,CHRNA7,EMC4,EMC7,FAM189A1,FAN1,FMN1,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,MTMR10,NDNL2,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,TJP1,TRPM1"
TCGA.AG.A00C.01A	15	28408208	28422087	8	-0.4785	NEUTRAL	NA	1	HERC2
TCGA.AG.A00C.01A	15	28422512	28473327	19	-0.0896	NEUTRAL	NA	1	HERC2
TCGA.AA.A00N.01A	15	28474294	28483257	7	-0.0628	NEUTRAL	NA	1	HERC2
TCGA.AG.A00C.01A	15	28474294	28544501	27	0.2427	NEUTRAL	NA	1	HERC2
TCGA.CK.5914.01A	15	28491000	30927673	81	-0.2851	NEUTRAL	NA	11	"APBA2,ARHGAP11B,CHRFAM7A,FAM189A1,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,NDNL2,TJP1"
TCGA.AA.A00N.01A	15	28510735	28517310	5	-0.0745	NEUTRAL	NA	1	HERC2
TCGA.AG.3909.01A	15	28517310	30659569	50	-0.3802	NEUTRAL	NA	8	"APBA2,CHRFAM7A,FAM189A1,GOLGA8J,GOLGA8M,HERC2,NDNL2,TJP1"
TCGA.AG.A00C.01A	15	28632762	29367067	5	-0.4661	NEUTRAL	NA	2	"APBA2,GOLGA8M"
TCGA.AA.3712	15	29247533	102400036	23699	-0.0053	NEUTRAL	NA	539	Too-Many
TCGA.AA.3861.01A	15	29367067	30112650	45	-0.2151	NEUTRAL	NA	4	"APBA2,FAM189A1,NDNL2,TJP1"
TCGA.AA.3862.01A	15	29368190	30112650	45	-0.1603	NEUTRAL	NA	4	"APBA2,FAM189A1,NDNL2,TJP1"
TCGA.AG.A00C.01A	15	29368190	30927673	47	0.0046	NEUTRAL	NA	9	"APBA2,ARHGAP11B,CHRFAM7A,FAM189A1,GOLGA8H,GOLGA8J,GOLGA8R,NDNL2,TJP1"
TCGA.AG.3891.01A	15	29386407	35274918	382	-0.0438	NEUTRAL	NA	40	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,AVEN,CHRFAM7A,CHRM5,CHRNA7,EMC4,EMC7,FAM189A1,FAN1,FMN1,GJD2,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,KATNBL1,KLF13,LOC283710,LPCAT4,MTMR10,NDNL2,NOP10,NUTM1,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,TJP1,TRPM1,ZNF770"
TCGA.AA.3930.01A	15	29397533	41812572	844	0.0777	NEUTRAL	NA	93	"ACTC1,ANKRD63,APBA2,AQR,ARHGAP11A,ARHGAP11B,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHRFAM7A,CHRM5,CHRNA7,CHST14,DISP2,DLL4,DNAJC17,DPH6,EIF2AK4,EMC4,EMC7,EXD1,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GCHFR,GJD2,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,INAFM2,INO80,ITPKA,IVD,KATNBL1,KLF13,KNSTRN,LOC283710,LPCAT4,LTK,MEIS2,MTMR10,NDNL2,NDUFAF1,NOP10,NUSAP1,NUTM1,OIP5,OTUD7A,PAK6,PGBD4,PHGR1,PLCB2,PPP1R14D,RAD51,RASGRP1,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,RYR3,SCG5,SLC12A6,SPINT1,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,VPS18,ZFYVE19,ZNF770"
TCGA.AA.A02K.01A	15	29406049	32450582	126	0.2838	NEUTRAL	NA	16	"APBA2,ARHGAP11B,CHRFAM7A,CHRNA7,FAM189A1,FAN1,GOLGA8H,GOLGA8J,GOLGA8R,KLF13,LOC283710,MTMR10,NDNL2,OTUD7A,TJP1,TRPM1"
TCGA.AA.A00N.01A	15	29428527	30659569	36	0.3132	NEUTRAL	NA	5	"CHRFAM7A,FAM189A1,GOLGA8J,NDNL2,TJP1"
TCGA.A6.3808.01A	15	29443909	30112650	31	0.1049	NEUTRAL	NA	3	"FAM189A1,NDNL2,TJP1"
TCGA.A6.5656	15	29530482	29682966	72	-0.0699	NEUTRAL	NA	2	"FAM189A1,NDNL2"
TCGA.A6.A56B	15	29726087	30355949	199	-0.4621	NEUTRAL	NA	2	"FAM189A1,TJP1"
TCGA.AA.A01I.01A	15	30000721	45393348	1486	-0.201	NEUTRAL	NA	147	Too-Many
TCGA.CK.4952.01A	15	30247411	100279870	5762	-0.0768	NEUTRAL	NA	522	Too-Many
TCGA.D5.6538	15	30281104	31791462	278	0.326	NEUTRAL	NA	11	"ARHGAP11B,CHRFAM7A,FAN1,GOLGA8H,GOLGA8J,GOLGA8R,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.AG.3611.01A	15	30664308	30927673	6	0.2292	NEUTRAL	NA	4	"ARHGAP11B,CHRFAM7A,GOLGA8H,GOLGA8R"
TCGA.A6.5656	15	30930499	32511554	464	-0.0417	NEUTRAL	NA	8	"ARHGAP11B,CHRNA7,FAN1,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.DM.A288	15	30930499	67224534	11723	0.3613	NEUTRAL	NA	288	Too-Many
TCGA.CK.6746	15	31012793	43834317	4081	0.02	NEUTRAL	NA	119	Too-Many
TCGA.EI.6513	15	31062379	47518806	4951	0.0478	NEUTRAL	NA	153	Too-Many
TCGA.CM.5348	15	31179533	36929368	2099	0.2962	NEUTRAL	NA	33	"ACTC1,AQR,ARHGAP11A,AVEN,C15orf41,CHRM5,CHRNA7,DPH6,EMC4,EMC7,FAN1,FMN1,GJD2,GOLGA8A,GOLGA8B,GOLGA8K,GOLGA8N,GOLGA8O,GREM1,KATNBL1,KLF13,LOC283710,LPCAT4,MTMR10,NOP10,NUTM1,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,TRPM1,ZNF770"
TCGA.AG.3611.01A	15	31196857	44624133	960	-0.259	NEUTRAL	NA	132	Too-Many
TCGA.AA.3861.01A	15	31200274	31822882	63	-0.4401	NEUTRAL	NA	6	"FAN1,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.AG.A00C.01A	15	31206032	34610714	260	-0.1206	NEUTRAL	NA	22	"ARHGAP11A,AVEN,CHRM5,CHRNA7,EMC4,EMC7,FAN1,FMN1,GOLGA8K,GOLGA8N,GOLGA8O,GREM1,KATNBL1,KLF13,LOC283710,MTMR10,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,TRPM1"
TCGA.AA.A00N.01A	15	31217283	31795847	55	0.0523	NEUTRAL	NA	6	"FAN1,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.CK.5914.01A	15	31217283	33066437	90	-0.1626	NEUTRAL	NA	14	"ARHGAP11A,CHRNA7,FAN1,FMN1,GOLGA8K,GOLGA8N,GOLGA8O,GREM1,KLF13,LOC283710,MTMR10,OTUD7A,SCG5,TRPM1"
TCGA.AG.3909.01A	15	31233646	31369018	42	-0.4809	NEUTRAL	NA	3	"FAN1,MTMR10,TRPM1"
TCGA.AA.A00A.01A	15	31253057	32323084	17	-0.0203	NEUTRAL	NA	6	"CHRNA7,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.AA.3666	15	31642988	63895735	10789	-0.4298	NEUTRAL	NA	241	Too-Many
TCGA.AG.3909.01A	15	31664161	31947247	11	0.2671	NEUTRAL	NA	2	"KLF13,OTUD7A"
TCGA.D5.6538	15	31791708	31820908	12	-0.1844	NEUTRAL	NA	1	OTUD7A
TCGA.EI.6511	15	31930336	32931903	160	0.0331	NEUTRAL	NA	6	"ARHGAP11A,CHRNA7,GOLGA8K,GOLGA8N,GOLGA8O,OTUD7A"
TCGA.AA.A00N.01A	15	32322755	33024481	29	-0.3009	NEUTRAL	NA	7	"ARHGAP11A,CHRNA7,GOLGA8K,GOLGA8N,GOLGA8O,GREM1,SCG5"
TCGA.AA.A02K.01A	15	32451717	32912258	6	-0.3159	NEUTRAL	NA	5	"ARHGAP11A,CHRNA7,GOLGA8K,GOLGA8N,GOLGA8O"
TCGA.AA.A02K.01A	15	32915645	42961306	1091	0.2758	NEUTRAL	NA	94	"ACTC1,ANKRD63,AQR,ARHGAP11A,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CAPN3,CASC5,CHAC1,CHP1,CHRM5,CHST14,DISP2,DLL4,DNAJC17,DPH6,EHD4,EIF2AK4,EMC4,EMC7,EXD1,FAM98B,FMN1,FSIP1,GANC,GCHFR,GJD2,GOLGA8A,GOLGA8B,GPR176,GREM1,HAUS2,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KATNBL1,KNSTRN,LPCAT4,LRRC57,LTK,MAPKBP1,MEIS2,MGA,NDUFAF1,NOP10,NUSAP1,NUTM1,OIP5,PAK6,PGBD4,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPP1R14D,RAD51,RASGRP1,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,RYR3,SCG5,SLC12A6,SNAP23,SPINT1,SPRED1,SPTBN5,SRP14,STARD9,THBS1,TMCO5A,TMEM87A,TYRO3,VPS18,VPS39,ZFYVE19,ZNF106,ZNF770"
TCGA.AA.3502	15	32931903	102400036	22810	-0.0201	NEUTRAL	NA	520	Too-Many
TCGA.D5.6929	15	32932097	42179423	3284	-0.0234	NEUTRAL	NA	81	"ACTC1,ANKRD63,AQR,ARHGAP11A,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHRM5,CHST14,DISP2,DLL4,DNAJC17,DPH6,EIF2AK4,EMC4,EMC7,EXD1,FAM98B,FMN1,FSIP1,GCHFR,GJD2,GOLGA8A,GOLGA8B,GPR176,GREM1,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KATNBL1,KNSTRN,LPCAT4,LTK,MAPKBP1,MEIS2,MGA,NDUFAF1,NOP10,NUSAP1,NUTM1,OIP5,PAK6,PGBD4,PHGR1,PLA2G4B,PLCB2,PPP1R14D,RAD51,RASGRP1,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,RYR3,SCG5,SLC12A6,SPINT1,SPRED1,SPTBN5,SRP14,THBS1,TMCO5A,TYRO3,VPS18,ZFYVE19,ZNF770"
TCGA.EI.6511	15	32932097	89763602	17754	-0.5038	NEUTRAL	NA	455	Too-Many
TCGA.AG.3909.01A	15	32935755	34135635	116	-0.0569	NEUTRAL	NA	4	"FMN1,GREM1,RYR3,SCG5"
TCGA.A6.3808.01A	15	32935755	34393755	140	0.3607	NEUTRAL	NA	7	"AVEN,CHRM5,EMC7,FMN1,GREM1,RYR3,SCG5"
TCGA.AA.3862.01A	15	32935755	41648200	663	-0.3636	NEUTRAL	NA	68	"ACTC1,ANKRD63,AQR,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHRM5,CHST14,DISP2,DLL4,DNAJC17,DPH6,EIF2AK4,EMC4,EMC7,EXD1,FAM98B,FMN1,FSIP1,GCHFR,GJD2,GOLGA8A,GOLGA8B,GPR176,GREM1,INAFM2,INO80,IVD,KATNBL1,KNSTRN,LPCAT4,MEIS2,NOP10,NUSAP1,NUTM1,OIP5,PAK6,PGBD4,PHGR1,PLCB2,PPP1R14D,RAD51,RASGRP1,RHOV,RMDN3,RPUSD2,RYR3,SCG5,SLC12A6,SPINT1,SPRED1,SRP14,THBS1,TMCO5A,VPS18,ZFYVE19,ZNF770"
TCGA.AA.3861.01A	15	32935755	43852604	1255	-0.1503	NEUTRAL	NA	108	Too-Many
TCGA.AA.A00L.01A	15	33261188	34077831	16	-0.0651	NEUTRAL	NA	2	"FMN1,RYR3"
TCGA.AA.A00A.01A	15	33261188	34129782	13	-0.2907	NEUTRAL	NA	2	"FMN1,RYR3"
TCGA.AA.3977	15	33304133	33390189	42	0.0577	NEUTRAL	NA	1	FMN1
TCGA.AA.3977	15	33397024	45013397	3510	0.0447	NEUTRAL	NA	124	Too-Many
TCGA.AA.3844	15	33403590	33782241	224	-0.0609	NEUTRAL	NA	2	"FMN1,RYR3"
TCGA.AF.6136	15	33720649	35395637	670	0.2471	NEUTRAL	NA	17	"ACTC1,AQR,AVEN,CHRM5,EMC4,EMC7,GJD2,GOLGA8A,GOLGA8B,KATNBL1,LPCAT4,NOP10,NUTM1,PGBD4,RYR3,SLC12A6,ZNF770"
TCGA.AA.A010.01A	15	33795785	33923352	21	-0.0479	NEUTRAL	NA	1	RYR3
TCGA.AA.3844	15	33795949	33821981	16	-0.0317	NEUTRAL	NA	1	RYR3
TCGA.AA.3941	15	33839193	33908315	59	0.1056	NEUTRAL	NA	1	RYR3
TCGA.AA.3844	15	33839193	34719934	375	0.0191	NEUTRAL	NA	12	"AVEN,CHRM5,EMC4,EMC7,GOLGA8A,KATNBL1,LPCAT4,NOP10,NUTM1,PGBD4,RYR3,SLC12A6"
TCGA.AH.6544	15	33913803	102400036	22230	-0.2615	NEUTRAL	NA	516	Too-Many
TCGA.AG.3906.01A	15	34115135	34135635	12	-0.1441	NEUTRAL	NA	1	RYR3
TCGA.AG.A015.01A	15	34129051	34652270	81	-0.2264	NEUTRAL	NA	11	"AVEN,CHRM5,EMC4,EMC7,KATNBL1,LPCAT4,NOP10,NUTM1,PGBD4,RYR3,SLC12A6"
TCGA.CK.5914.01A	15	34135635	35085405	100	-0.3443	NEUTRAL	NA	15	"ACTC1,AVEN,CHRM5,EMC4,EMC7,GJD2,GOLGA8A,GOLGA8B,KATNBL1,LPCAT4,NOP10,NUTM1,PGBD4,RYR3,SLC12A6"
TCGA.AG.3909.01A	15	34137044	34553073	62	-0.3554	NEUTRAL	NA	8	"AVEN,CHRM5,EMC4,EMC7,KATNBL1,PGBD4,RYR3,SLC12A6"
TCGA.A6.3808.01A	15	34446777	37388443	129	0.1222	NEUTRAL	NA	15	"ACTC1,AQR,C15orf41,DPH6,EMC4,GJD2,GOLGA8A,GOLGA8B,KATNBL1,LPCAT4,MEIS2,NOP10,NUTM1,SLC12A6,ZNF770"
TCGA.AA.A010.01A	15	34455709	34534263	16	-0.3664	NEUTRAL	NA	3	"EMC4,KATNBL1,SLC12A6"
TCGA.AA.A01Q.01A	15	34634151	37386657	48	-0.2369	NEUTRAL	NA	12	"ACTC1,AQR,C15orf41,DPH6,GJD2,GOLGA8A,GOLGA8B,LPCAT4,MEIS2,NOP10,NUTM1,ZNF770"
TCGA.AG.3906.01A	15	34640151	34657743	17	0.1496	NEUTRAL	NA	2	"LPCAT4,NUTM1"
TCGA.AA.A00Q.01A	15	34651740	35182369	18	0.0152	NEUTRAL	NA	6	"ACTC1,AQR,GJD2,GOLGA8A,GOLGA8B,LPCAT4"
TCGA.AA.A00L.01A	15	34652270	35176687	19	-0.0559	NEUTRAL	NA	6	"ACTC1,AQR,GJD2,GOLGA8A,GOLGA8B,LPCAT4"
TCGA.AF.3914.01A	15	34673675	35086830	13	-0.3946	NEUTRAL	NA	4	"ACTC1,GJD2,GOLGA8A,GOLGA8B"
TCGA.AA.A010.01A	15	34673675	35212496	33	0.1604	NEUTRAL	NA	5	"ACTC1,AQR,GJD2,GOLGA8A,GOLGA8B"
TCGA.AG.A00C.01A	15	34673675	35224472	36	-0.1978	NEUTRAL	NA	5	"ACTC1,AQR,GJD2,GOLGA8A,GOLGA8B"
TCGA.AG.A015.01A	15	34673675	40710299	281	-0.1642	NEUTRAL	NA	32	"ACTC1,ANKRD63,AQR,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,DISP2,DPH6,EIF2AK4,FAM98B,FSIP1,GJD2,GOLGA8A,GOLGA8B,GPR176,INAFM2,IVD,KNSTRN,MEIS2,PAK6,PHGR1,PLCB2,RASGRP1,SPRED1,SRP14,THBS1,TMCO5A,ZNF770"
TCGA.AA.3844	15	34763615	39601512	1788	-0.2972	NEUTRAL	NA	14	"ACTC1,AQR,C15orf41,C15orf53,C15orf54,DPH6,FAM98B,GJD2,GOLGA8B,MEIS2,RASGRP1,SPRED1,TMCO5A,ZNF770"
TCGA.D5.6923	15	34800594	47513252	3597	-0.0538	NEUTRAL	NA	127	Too-Many
TCGA.AF.3911	15	34870222	102400036	21955	-0.4836	NEUTRAL	NA	503	Too-Many
TCGA.AA.3941	15	34897131	35077785	129	0.0889	NEUTRAL	NA	1	GJD2
TCGA.A6.5659	15	34985413	49325080	3871	-0.4921	NEUTRAL	NA	136	Too-Many
TCGA.AG.4009.01A	15	35086830	35212496	23	-0.1374	NEUTRAL	NA	2	"ACTC1,AQR"
TCGA.AA.A00N.01A	15	35086830	35219185	24	0.345	NEUTRAL	NA	2	"ACTC1,AQR"
TCGA.AY.6196	15	35113776	71295191	11431	-0.0717	NEUTRAL	NA	282	Too-Many
TCGA.AF.3914.01A	15	35148951	35230877	27	-0.014	NEUTRAL	NA	1	AQR
TCGA.AG.3906.01A	15	35219185	35256362	12	0.0917	NEUTRAL	NA	1	AQR
TCGA.AG.4009.01A	15	35245003	37328986	31	-0.0806	NEUTRAL	NA	5	"AQR,C15orf41,DPH6,MEIS2,ZNF770"
TCGA.AF.3914.01A	15	35252899	37375924	31	0.0453	NEUTRAL	NA	5	"AQR,C15orf41,DPH6,MEIS2,ZNF770"
TCGA.AA.3509.01A	15	35261680	38803765	66	0.3287	NEUTRAL	NA	9	"AQR,C15orf41,DPH6,FAM98B,MEIS2,RASGRP1,SPRED1,TMCO5A,ZNF770"
TCGA.AZ.4684.01A	15	35261680	38811443	70	-0.0941	NEUTRAL	NA	9	"AQR,C15orf41,DPH6,FAM98B,MEIS2,RASGRP1,SPRED1,TMCO5A,ZNF770"
TCGA.AA.A00L.01A	15	35273622	40397996	91	0.3669	NEUTRAL	NA	16	"BMF,C15orf41,C15orf53,C15orf54,DPH6,EIF2AK4,FAM98B,FSIP1,GPR176,MEIS2,RASGRP1,SPRED1,SRP14,THBS1,TMCO5A,ZNF770"
TCGA.AA.3850	15	35381486	39856206	1694	-0.39165	NEUTRAL	NA	9	"C15orf41,C15orf53,C15orf54,DPH6,FAM98B,MEIS2,RASGRP1,SPRED1,TMCO5A"
TCGA.AF.6136	15	35397369	102400036	21691	-0.04	NEUTRAL	NA	499	Too-Many
TCGA.AA.3941	15	35421930	37816499	844	-0.2186	NEUTRAL	NA	3	"C15orf41,DPH6,MEIS2"
TCGA.AG.3891.01A	15	35664277	37242487	25	-0.2958	NEUTRAL	NA	3	"C15orf41,DPH6,MEIS2"
TCGA.AA.A010.01A	15	35664277	37328986	27	0.2443	NEUTRAL	NA	3	"C15orf41,DPH6,MEIS2"
TCGA.AG.A00C.01A	15	35664277	37375924	27	-0.1733	NEUTRAL	NA	3	"C15orf41,DPH6,MEIS2"
TCGA.CK.5914.01A	15	35664277	37375924	28	0.0275	NEUTRAL	NA	3	"C15orf41,DPH6,MEIS2"
TCGA.AA.A00Q.01A	15	35742835	37390121	16	0.2116	NEUTRAL	NA	3	"C15orf41,DPH6,MEIS2"
TCGA.AA.A01Z	15	35768350	36648329	318	-0.0485	NEUTRAL	NA	1	DPH6
TCGA.D5.6538	15	35837296	52990945	4917	0.3665	NEUTRAL	NA	162	Too-Many
TCGA.CM.5348	15	36933882	37778550	281	-0.4442	NEUTRAL	NA	2	"C15orf41,MEIS2"
TCGA.AG.3891.01A	15	37328986	38243186	18	0.0879	NEUTRAL	NA	2	"MEIS2,TMCO5A"
TCGA.AA.A01Q.01A	15	37387694	40544474	93	0.1017	NEUTRAL	NA	16	"BMF,BUB1B,C15orf53,C15orf54,C15orf56,EIF2AK4,FAM98B,FSIP1,GPR176,MEIS2,PAK6,RASGRP1,SPRED1,SRP14,THBS1,TMCO5A"
TCGA.AA.A01Z	15	37716071	38442831	226	0.0127	NEUTRAL	NA	1	TMCO5A
TCGA.CM.5348	15	37779635	47112037	2454	-0.0148	NEUTRAL	NA	118	Too-Many
TCGA.AA.3941	15	37828472	39601512	698	0.0147	NEUTRAL	NA	6	"C15orf53,C15orf54,FAM98B,RASGRP1,SPRED1,TMCO5A"
TCGA.AG.3906.01A	15	38228473	38235484	8	-0.2408	NEUTRAL	NA	1	TMCO5A
TCGA.AG.3909.01A	15	38228473	39544329	42	-0.2742	NEUTRAL	NA	6	"C15orf53,C15orf54,FAM98B,RASGRP1,SPRED1,TMCO5A"
TCGA.AG.A00C.01A	15	38228473	39544329	42	-0.281	NEUTRAL	NA	6	"C15orf53,C15orf54,FAM98B,RASGRP1,SPRED1,TMCO5A"
TCGA.AF.3914.01A	15	38228473	39873993	43	-0.0581	NEUTRAL	NA	7	"C15orf53,C15orf54,FAM98B,RASGRP1,SPRED1,THBS1,TMCO5A"
TCGA.AA.A010.01A	15	38228473	40226365	78	0.1318	NEUTRAL	NA	10	"C15orf53,C15orf54,EIF2AK4,FAM98B,FSIP1,GPR176,RASGRP1,SPRED1,THBS1,TMCO5A"
TCGA.AG.4009.01A	15	38228473	40564388	142	-0.0057	NEUTRAL	NA	15	"BMF,BUB1B,C15orf53,C15orf54,C15orf56,EIF2AK4,FAM98B,FSIP1,GPR176,PAK6,RASGRP1,SPRED1,SRP14,THBS1,TMCO5A"
TCGA.RU.A8FL	15	38228972	40265502	854	-0.4853	NEUTRAL	NA	10	"C15orf53,C15orf54,EIF2AK4,FAM98B,FSIP1,GPR176,RASGRP1,SPRED1,THBS1,TMCO5A"
TCGA.AA.A01F.01A	15	38234335	41762424	246	-0.2478	NEUTRAL	NA	47	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DISP2,DLL4,DNAJC17,EIF2AK4,EXD1,FAM98B,FSIP1,GCHFR,GPR176,INAFM2,INO80,IVD,KNSTRN,NDUFAF1,NUSAP1,OIP5,PAK6,PHGR1,PLCB2,PPP1R14D,RAD51,RASGRP1,RHOV,RMDN3,RPUSD2,RTF1,SPINT1,SPRED1,SRP14,THBS1,TMCO5A,VPS18,ZFYVE19"
TCGA.AG.3891.01A	15	38545306	40226365	65	-0.186	NEUTRAL	NA	9	"C15orf53,C15orf54,EIF2AK4,FAM98B,FSIP1,GPR176,RASGRP1,SPRED1,THBS1"
TCGA.3L.AA1B	15	38546981	44133889	1462	-0.4028	NEUTRAL	NA	95	"ADAL,ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CAPN3,CASC5,CATSPER2,CCNDBP1,CDAN1,CHAC1,CHP1,CHST14,CKMT1A,CKMT1B,DISP2,DLL4,DNAJC17,EHD4,EIF2AK4,ELL3,EPB42,EXD1,FAM98B,FSIP1,GANC,GCHFR,GPR176,HAUS2,HYPK,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LCMT2,LRRC57,LTK,MAP1A,MAPKBP1,MFAP1,MGA,NDUFAF1,NUSAP1,OIP5,PAK6,PDIA3,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPIP5K1,PPP1R14D,RAD51,RASGRP1,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SERF2,SERINC4,SNAP23,SPINT1,SPRED1,SPTBN5,SRP14,STARD9,STRC,TGM5,TGM7,THBS1,TMEM62,TMEM87A,TP53BP1,TTBK2,TUBGCP4,TYRO3,UBR1,VPS18,VPS39,WDR76,ZFYVE19,ZNF106,ZSCAN29"
TCGA.A6.3808.01A	15	38614425	40897227	212	0.0271	NEUTRAL	NA	27	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,CASC5,CHST14,DISP2,EIF2AK4,FAM98B,FSIP1,GPR176,INAFM2,IVD,KNSTRN,PAK6,PHGR1,PLCB2,RASGRP1,RPUSD2,SPRED1,SRP14,THBS1"
TCGA.CA.6719	15	38799586	75077366	11213	-0.0179	NEUTRAL	NA	313	Too-Many
TCGA.AA.3509.01A	15	38804936	40865677	188	-0.0365	NEUTRAL	NA	24	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,CHST14,DISP2,EIF2AK4,FSIP1,GPR176,INAFM2,IVD,KNSTRN,PAK6,PHGR1,PLCB2,RASGRP1,RPUSD2,SRP14,THBS1"
TCGA.AA.A01Z	15	38985421	41119184	817	0.0391	NEUTRAL	NA	31	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CASC5,CHST14,DISP2,DNAJC17,EIF2AK4,FSIP1,GCHFR,GPR176,INAFM2,IVD,KNSTRN,PAK6,PHGR1,PLCB2,PPP1R14D,RAD51,RMDN3,RPUSD2,SRP14,THBS1,ZFYVE19"
TCGA.AA.A00Q.01A	15	38990332	39882029	12	-0.1736	NEUTRAL	NA	3	"C15orf53,C15orf54,THBS1"
TCGA.AG.A01W.01A	15	39063640	39560020	92	-0.0079	NEUTRAL	NA	1	C15orf54
TCGA.AA.3667	15	39449002	39498372	31	-0.3834	NEUTRAL	NA	0	None
TCGA.AA.3667	15	39498641	61708175	6974	-0.0355	NEUTRAL	NA	194	Too-Many
TCGA.A6.A56B	15	39568380	41819997	571	-0.3998	NEUTRAL	NA	44	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DISP2,DLL4,DNAJC17,EIF2AK4,EXD1,FSIP1,GCHFR,GPR176,INAFM2,INO80,ITPKA,IVD,KNSTRN,LTK,NDUFAF1,NUSAP1,OIP5,PAK6,PHGR1,PLCB2,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SPINT1,SRP14,THBS1,VPS18,ZFYVE19"
TCGA.AG.A01W.01A	15	39593088	39616388	20	-0.3268	NEUTRAL	NA	0	None
TCGA.AA.3982	15	39601512	40510315	345	-0.1873	NEUTRAL	NA	8	"BMF,BUB1B,EIF2AK4,FSIP1,GPR176,PAK6,SRP14,THBS1"
TCGA.AA.3844	15	39602379	46244826	1433	0.0728	NEUTRAL	NA	112	Too-Many
TCGA.AG.A01W.01A	15	39640580	39841579	40	0.1273	NEUTRAL	NA	0	None
TCGA.AA.3941	15	39646222	39769639	43	0.2663	NEUTRAL	NA	0	None
TCGA.AA.3941	15	39786974	40175963	164	0.2826	NEUTRAL	NA	3	"FSIP1,GPR176,THBS1"
TCGA.AA.3850	15	39867506	40292089	159	0.11045	NEUTRAL	NA	4	"EIF2AK4,FSIP1,GPR176,THBS1"
TCGA.CK.5914.01A	15	39873993	40556960	102	-0.1799	NEUTRAL	NA	9	"BMF,BUB1B,C15orf56,EIF2AK4,FSIP1,GPR176,PAK6,SRP14,THBS1"
TCGA.AG.A00C.01A	15	39873993	41535804	308	0.1346	NEUTRAL	NA	37	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DISP2,DLL4,DNAJC17,EIF2AK4,EXD1,FSIP1,GCHFR,GPR176,INAFM2,INO80,IVD,KNSTRN,PAK6,PHGR1,PLCB2,PPP1R14D,RAD51,RHOV,RMDN3,RPUSD2,SPINT1,SRP14,THBS1,VPS18,ZFYVE19"
TCGA.AG.A01W.01A	15	39879258	39915904	31	-0.1182	NEUTRAL	NA	2	"FSIP1,THBS1"
TCGA.AF.3914.01A	15	39879498	40311247	56	-0.0575	NEUTRAL	NA	4	"EIF2AK4,FSIP1,GPR176,THBS1"
TCGA.AA.A00Q.01A	15	39882670	42503828	399	0.3085	NEUTRAL	NA	57	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DISP2,DLL4,DNAJC17,EHD4,EIF2AK4,EXD1,FSIP1,GCHFR,GPR176,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,PAK6,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SPINT1,SPTBN5,SRP14,THBS1,TMEM87A,TYRO3,VPS18,VPS39,ZFYVE19"
TCGA.AA.3811	15	40059510	42579109	559	0.2681	NEUTRAL	NA	57	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DISP2,DLL4,DNAJC17,EHD4,EIF2AK4,EXD1,FSIP1,GANC,GCHFR,GPR176,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,PAK6,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SPINT1,SPTBN5,SRP14,TMEM87A,TYRO3,VPS18,VPS39,ZFYVE19"
TCGA.AA.3869	15	40198301	100974314	19282	-0.0036	NEUTRAL	NA	476	Too-Many
TCGA.AG.A01W.01A	15	40229832	40235883	7	-0.3274	NEUTRAL	NA	1	EIF2AK4
TCGA.AG.3906.01A	15	40231684	40284307	16	-0.282	NEUTRAL	NA	1	EIF2AK4
TCGA.AG.3891.01A	15	40231684	40557996	70	0.0952	NEUTRAL	NA	6	"BMF,BUB1B,C15orf56,EIF2AK4,PAK6,SRP14"
TCGA.AA.A010.01A	15	40265067	40544474	59	0.2488	NEUTRAL	NA	6	"BMF,BUB1B,C15orf56,EIF2AK4,PAK6,SRP14"
TCGA.RU.A8FL	15	40269842	40519707	67	0.2345	NEUTRAL	NA	5	"BMF,BUB1B,EIF2AK4,PAK6,SRP14"
TCGA.AG.A01W.01A	15	40340370	40343532	3	-0.3478	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	15	40347390	40430768	26	0.3716	NEUTRAL	NA	1	BMF
TCGA.AF.3914.01A	15	40383937	40655874	62	-0.114	NEUTRAL	NA	10	"ANKRD63,BMF,BUB1B,C15orf52,C15orf56,DISP2,INAFM2,PAK6,PHGR1,PLCB2"
TCGA.AG.A01W.01A	15	40431469	40485324	18	-0.022	NEUTRAL	NA	1	BUB1B
TCGA.AA.A00N.01A	15	40453348	40501817	16	0.3576	NEUTRAL	NA	1	BUB1B
TCGA.AG.3909.01A	15	40453348	40544474	23	-0.3262	NEUTRAL	NA	3	"BUB1B,C15orf56,PAK6"
TCGA.AG.A01W.01A	15	40507462	40745217	45	-0.017	NEUTRAL	NA	12	"ANKRD63,BAHD1,BUB1B,C15orf52,C15orf56,DISP2,INAFM2,IVD,KNSTRN,PAK6,PHGR1,PLCB2"
TCGA.AA.3982	15	40519707	42573066	424	0.1036	NEUTRAL	NA	51	"ANKRD63,BAHD1,C15orf52,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DISP2,DLL4,DNAJC17,EHD4,EXD1,GANC,GCHFR,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,PAK6,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SPINT1,SPTBN5,TMEM87A,TYRO3,VPS18,VPS39,ZFYVE19"
TCGA.RU.A8FL	15	40529129	40673123	36	-0.0198	NEUTRAL	NA	8	"ANKRD63,C15orf52,C15orf56,DISP2,INAFM2,PAK6,PHGR1,PLCB2"
TCGA.AA.A01Q.01A	15	40556960	40710299	37	-0.2636	NEUTRAL	NA	9	"ANKRD63,C15orf52,DISP2,INAFM2,IVD,KNSTRN,PAK6,PHGR1,PLCB2"
TCGA.AA.A00L.01A	15	40556960	40912801	46	0.2935	NEUTRAL	NA	14	"ANKRD63,BAHD1,C15orf52,C15orf57,CASC5,CHST14,DISP2,INAFM2,IVD,KNSTRN,PAK6,PHGR1,PLCB2,RPUSD2"
TCGA.AG.3891.01A	15	40564388	40565515	3	-0.2907	NEUTRAL	NA	1	PAK6
TCGA.AG.3891.01A	15	40566325	41364000	190	0.262	NEUTRAL	NA	27	"ANKRD63,BAHD1,C15orf52,C15orf57,C15orf62,CASC5,CHAC1,CHST14,DISP2,DLL4,DNAJC17,GCHFR,INAFM2,INO80,IVD,KNSTRN,PAK6,PHGR1,PLCB2,PPP1R14D,RAD51,RHOV,RMDN3,RPUSD2,SPINT1,VPS18,ZFYVE19"
TCGA.AG.A00Y.01A	15	40588484	45389386	955	-0.2035	NEUTRAL	NA	91	"ADAL,B2M,BAHD1,C15orf43,C15orf52,C15orf57,C15orf62,CAPN3,CASC4,CASC5,CATSPER2,CCNDBP1,CDAN1,CHAC1,CHP1,CHST14,CKMT1A,CKMT1B,CTDSPL2,DISP2,DLL4,DNAJC17,DUOX2,EHD4,EIF3J,ELL3,EPB42,EXD1,FRMD5,GANC,GCHFR,HAUS2,HYPK,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LCMT2,LRRC57,LTK,MAP1A,MAPKBP1,MFAP1,MGA,NDUFAF1,NUSAP1,OIP5,PATL2,PDIA3,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPIP5K1,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SERF2,SERINC4,SNAP23,SORD,SPG11,SPINT1,SPTBN5,STARD9,STRC,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TRIM69,TTBK2,TUBGCP4,TYRO3,UBR1,VPS18,VPS39,WDR76,ZFYVE19,ZNF106,ZSCAN29"
TCGA.AA.3872	15	40606483	40915893	77	0.1505	NEUTRAL	NA	11	"BAHD1,C15orf52,C15orf57,CASC5,CHST14,DISP2,INAFM2,IVD,KNSTRN,PHGR1,RPUSD2"
TCGA.AG.3906.01A	15	40661002	40703726	17	-0.4112	NEUTRAL	NA	3	"DISP2,IVD,KNSTRN"
TCGA.AG.4009.01A	15	40675017	40710299	21	0.212	NEUTRAL	NA	2	"IVD,KNSTRN"
TCGA.AF.3914.01A	15	40675017	41641249	189	0.0119	NEUTRAL	NA	24	"BAHD1,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DLL4,DNAJC17,EXD1,GCHFR,INO80,IVD,KNSTRN,NUSAP1,OIP5,PPP1R14D,RAD51,RHOV,RMDN3,RPUSD2,SPINT1,VPS18,ZFYVE19"
TCGA.AA.A02H.01A	15	40678546	45436182	937	-0.2202	NEUTRAL	NA	89	"ADAL,B2M,BAHD1,C15orf43,C15orf57,C15orf62,CAPN3,CASC4,CASC5,CATSPER2,CCNDBP1,CDAN1,CHAC1,CHP1,CHST14,CKMT1A,CKMT1B,CTDSPL2,DLL4,DNAJC17,DUOX1,DUOX2,DUOXA1,DUOXA2,EHD4,EIF3J,ELL3,EPB42,EXD1,FRMD5,GANC,GCHFR,HAUS2,HYPK,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LCMT2,LRRC57,LTK,MAP1A,MAPKBP1,MFAP1,MGA,NDUFAF1,NUSAP1,OIP5,PATL2,PDIA3,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PPIP5K1,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SERF2,SERINC4,SNAP23,SORD,SPG11,SPINT1,SPTBN5,STARD9,STRC,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TRIM69,TTBK2,TUBGCP4,TYRO3,UBR1,VPS18,VPS39,WDR76,ZFYVE19,ZNF106,ZSCAN29"
TCGA.AG.3906.01A	15	40705148	40763401	11	0.2678	NEUTRAL	NA	3	"BAHD1,CHST14,IVD"
TCGA.AG.A01W.01A	15	40748598	40775183	13	0.3062	NEUTRAL	NA	2	"BAHD1,CHST14"
TCGA.AG.A015.01A	15	40763401	40897227	10	-0.4263	NEUTRAL	NA	4	"C15orf57,CASC5,CHST14,RPUSD2"
TCGA.AG.A01W.01A	15	40796110	41083274	61	-0.1396	NEUTRAL	NA	8	"C15orf57,C15orf62,CASC5,DNAJC17,GCHFR,RAD51,RMDN3,RPUSD2"
TCGA.AG.4009.01A	15	40846158	41108127	71	0.152	NEUTRAL	NA	10	"C15orf57,C15orf62,CASC5,DNAJC17,GCHFR,PPP1R14D,RAD51,RMDN3,RPUSD2,ZFYVE19"
TCGA.AA.A01Q.01A	15	40846158	41148042	53	-0.0265	NEUTRAL	NA	11	"C15orf57,C15orf62,CASC5,DNAJC17,GCHFR,PPP1R14D,RAD51,RMDN3,RPUSD2,SPINT1,ZFYVE19"
TCGA.AA.A00N.01A	15	40856883	40907466	11	-0.1662	NEUTRAL	NA	3	"C15orf57,CASC5,RPUSD2"
TCGA.AA.3519	15	40885106	102400036	19726	-0.3327	NEUTRAL	NA	469	Too-Many
TCGA.AG.A015.01A	15	40898524	40943622	16	-0.0471	NEUTRAL	NA	1	CASC5
TCGA.AG.3909.01A	15	40898524	40949505	20	-0.2777	NEUTRAL	NA	1	CASC5
TCGA.AA.A010.01A	15	40903591	41043573	38	0.0085	NEUTRAL	NA	3	"CASC5,RAD51,RMDN3"
TCGA.D5.6531	15	40905556	61684204	6481	0.2224	NEUTRAL	NA	172	Too-Many
TCGA.AZ.4684.01A	15	40911082	40920221	4	-0.1548	NEUTRAL	NA	1	CASC5
TCGA.AA.A00N.01A	15	40911082	40937802	9	0.3512	NEUTRAL	NA	1	CASC5
TCGA.AG.3906.01A	15	40920756	41032280	29	-0.2325	NEUTRAL	NA	3	"CASC5,RAD51,RMDN3"
TCGA.AA.A00N.01A	15	40939137	40947075	5	-0.0757	NEUTRAL	NA	1	CASC5
TCGA.AG.A015.01A	15	40949505	41067696	28	0.0967	NEUTRAL	NA	6	"C15orf62,CASC5,DNAJC17,GCHFR,RAD51,RMDN3"
TCGA.AA.3509.01A	15	41010964	41341448	86	-0.0804	NEUTRAL	NA	13	"C15orf62,CHAC1,DLL4,DNAJC17,GCHFR,INO80,PPP1R14D,RAD51,RHOV,RMDN3,SPINT1,VPS18,ZFYVE19"
TCGA.CK.5914.01A	15	41029775	41148931	42	-0.0551	NEUTRAL	NA	7	"C15orf62,DNAJC17,GCHFR,PPP1R14D,RMDN3,SPINT1,ZFYVE19"
TCGA.AA.A00L.01A	15	41030639	41319742	56	0.3685	NEUTRAL	NA	12	"C15orf62,CHAC1,DLL4,DNAJC17,GCHFR,INO80,PPP1R14D,RHOV,RMDN3,SPINT1,VPS18,ZFYVE19"
TCGA.A6.3808.01A	15	41030639	41384193	93	0.0355	NEUTRAL	NA	12	"C15orf62,CHAC1,DLL4,DNAJC17,GCHFR,INO80,PPP1R14D,RHOV,RMDN3,SPINT1,VPS18,ZFYVE19"
TCGA.AG.3909.01A	15	41068341	41120553	16	-0.0773	NEUTRAL	NA	3	"DNAJC17,PPP1R14D,ZFYVE19"
TCGA.AG.A015.01A	15	41068341	41829101	151	-0.2341	NEUTRAL	NA	18	"CHAC1,CHP1,DLL4,DNAJC17,EXD1,INO80,ITPKA,LTK,NDUFAF1,NUSAP1,OIP5,PPP1R14D,RHOV,RPAP1,RTF1,SPINT1,VPS18,ZFYVE19"
TCGA.AA.3819	15	41071714	85842080	12957	0.0009	NEUTRAL	NA	385	Too-Many
TCGA.AG.A01W.01A	15	41100739	41536036	138	0.0137	NEUTRAL	NA	10	"CHAC1,CHP1,DLL4,EXD1,INO80,PPP1R14D,RHOV,SPINT1,VPS18,ZFYVE19"
TCGA.AG.3906.01A	15	41101279	41601912	85	-0.3074	NEUTRAL	NA	11	"CHAC1,CHP1,DLL4,EXD1,INO80,OIP5,PPP1R14D,RHOV,SPINT1,VPS18,ZFYVE19"
TCGA.AG.4009.01A	15	41120553	41247522	25	-0.4071	NEUTRAL	NA	6	"CHAC1,DLL4,PPP1R14D,RHOV,SPINT1,VPS18"
TCGA.AA.A00N.01A	15	41136704	41247522	28	-0.5053	NEUTRAL	NA	5	"CHAC1,DLL4,RHOV,SPINT1,VPS18"
TCGA.AA.A010.01A	15	41165214	41221843	10	0.1903	NEUTRAL	NA	3	"DLL4,RHOV,VPS18"
TCGA.AA.A00N.01A	15	41272439	41379708	31	0.3305	NEUTRAL	NA	1	INO80
TCGA.AA.A010.01A	15	41272439	41379708	31	0.21	NEUTRAL	NA	1	INO80
TCGA.AG.3909.01A	15	41272439	41554912	47	-0.2596	NEUTRAL	NA	3	"CHP1,EXD1,INO80"
TCGA.AA.A01Q.01A	15	41272439	41570918	50	0.3317	NEUTRAL	NA	3	"CHP1,EXD1,INO80"
TCGA.CK.5914.01A	15	41272439	41570918	50	0.0279	NEUTRAL	NA	3	"CHP1,EXD1,INO80"
TCGA.AG.4009.01A	15	41272439	41571459	50	0.1336	NEUTRAL	NA	3	"CHP1,EXD1,INO80"
TCGA.AA.3509.01A	15	41342108	41772762	72	-0.4997	NEUTRAL	NA	7	"CHP1,EXD1,INO80,NDUFAF1,NUSAP1,OIP5,RTF1"
TCGA.AA.3967.01A	15	41371862	41870124	110	-0.115	NEUTRAL	NA	11	"CHP1,EXD1,INO80,ITPKA,LTK,NDUFAF1,NUSAP1,OIP5,RPAP1,RTF1,TYRO3"
TCGA.AA.A00N.01A	15	41384193	41554912	17	-0.3364	NEUTRAL	NA	3	"CHP1,EXD1,INO80"
TCGA.AG.A01W.01A	15	41571125	41836091	51	-0.4982	NEUTRAL	NA	8	"CHP1,ITPKA,LTK,NDUFAF1,NUSAP1,OIP5,RPAP1,RTF1"
TCGA.AA.A01Q.01A	15	41571459	42120253	111	-0.1026	NEUTRAL	NA	11	"CHP1,ITPKA,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,RPAP1,RTF1,TYRO3"
TCGA.AA.A010.01A	15	41601912	41650310	11	-0.2628	NEUTRAL	NA	2	"NUSAP1,OIP5"
TCGA.AG.3906.01A	15	41605423	41772762	32	0.135	NEUTRAL	NA	4	"NDUFAF1,NUSAP1,OIP5,RTF1"
TCGA.AG.4009.01A	15	41624461	41648200	6	0.0937	NEUTRAL	NA	2	"NUSAP1,OIP5"
TCGA.CK.5914.01A	15	41624461	41663708	9	-0.0846	NEUTRAL	NA	2	"NUSAP1,OIP5"
TCGA.AG.3909.01A	15	41634522	41667859	8	-0.1066	NEUTRAL	NA	1	NUSAP1
TCGA.AA.3862.01A	15	41650310	42117385	126	0.239	NEUTRAL	NA	9	"ITPKA,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,RPAP1,RTF1,TYRO3"
TCGA.AA.A010.01A	15	41709267	41749829	4	-0.1319	NEUTRAL	NA	1	RTF1
TCGA.AA.A01Z	15	41730245	56384638	4231	0.0086	NEUTRAL	NA	127	Too-Many
TCGA.CK.5914.01A	15	41730481	41766758	8	0.0777	NEUTRAL	NA	1	RTF1
TCGA.AG.3909.01A	15	41745099	41758292	4	-0.1339	NEUTRAL	NA	1	RTF1
TCGA.AG.4009.01A	15	41745099	41772762	15	-0.0268	NEUTRAL	NA	1	RTF1
TCGA.AA.A01F.01A	15	41763321	102462347	3811	0.1184	NEUTRAL	NA	451	Too-Many
TCGA.AA.3509.01A	15	41785576	44093270	666	-0.0857	NEUTRAL	NA	47	"ADAL,CAPN3,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,EHD4,ELL3,EPB42,GANC,HAUS2,HYPK,ITPKA,JMJD7,JMJD7-PLA2G4B,LCMT2,LRRC57,LTK,MAP1A,MAPKBP1,MGA,PDIA3,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PPIP5K1,RPAP1,SERF2,SERINC4,SNAP23,SPTBN5,STARD9,STRC,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TTBK2,TUBGCP4,TYRO3,UBR1,VPS39,ZNF106,ZSCAN29"
TCGA.AM.5820	15	41790986	67129985	8015	-0.0175	NEUTRAL	NA	206	Too-Many
TCGA.AG.4009.01A	15	41793609	41796192	3	-0.4427	NEUTRAL	NA	2	"ITPKA,LTK"
TCGA.AA.A00D.01A	15	41793609	42749134	244	-0.0411	NEUTRAL	NA	19	"CAPN3,EHD4,GANC,ITPKA,JMJD7,JMJD7-PLA2G4B,LTK,MAPKBP1,MGA,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,RPAP1,SPTBN5,TMEM87A,TYRO3,VPS39,ZNF106"
TCGA.AG.3909.01A	15	41794553	41801178	8	-0.3076	NEUTRAL	NA	2	"ITPKA,LTK"
TCGA.AA.A00L.01A	15	41794965	41805790	11	0.1986	NEUTRAL	NA	2	"ITPKA,LTK"
TCGA.AG.A00C.01A	15	41797894	42434151	173	0.0498	NEUTRAL	NA	13	"EHD4,JMJD7,JMJD7-PLA2G4B,LTK,MAPKBP1,MGA,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,RPAP1,SPTBN5,TYRO3"
TCGA.AG.4009.01A	15	41801178	41829101	23	-0.2243	NEUTRAL	NA	2	"LTK,RPAP1"
TCGA.AA.A00N.01A	15	41803310	41961066	42	-0.2587	NEUTRAL	NA	4	"LTK,MGA,RPAP1,TYRO3"
TCGA.AG.3909.01A	15	41803975	41853318	23	0.0917	NEUTRAL	NA	3	"LTK,RPAP1,TYRO3"
TCGA.CK.5914.01A	15	41812572	42067423	61	-0.0785	NEUTRAL	NA	4	"MAPKBP1,MGA,RPAP1,TYRO3"
TCGA.AG.3906.01A	15	41814936	41853318	17	0.148	NEUTRAL	NA	2	"RPAP1,TYRO3"
TCGA.A6.3808.01A	15	41815932	42116627	81	-0.1383	NEUTRAL	NA	4	"MAPKBP1,MGA,RPAP1,TYRO3"
TCGA.AA.3930.01A	15	41819088	42116627	79	0.2388	NEUTRAL	NA	4	"MAPKBP1,MGA,RPAP1,TYRO3"
TCGA.AA.A00K.01A	15	41819088	102462347	3821	0.3355	NEUTRAL	NA	448	Too-Many
TCGA.A6.3810.01A	15	41829101	41870124	18	0.127	NEUTRAL	NA	2	"RPAP1,TYRO3"
TCGA.AG.A01W.01A	15	41840886	41856211	14	0.1402	NEUTRAL	NA	1	TYRO3
TCGA.AG.A015.01A	15	41853318	41870124	17	0.2985	NEUTRAL	NA	1	TYRO3
TCGA.AA.A00L.01A	15	41853318	42067423	25	0.2131	NEUTRAL	NA	3	"MAPKBP1,MGA,TYRO3"
TCGA.AG.3891.01A	15	41870124	44119173	585	0.1118	NEUTRAL	NA	46	"ADAL,CAPN3,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,EHD4,ELL3,EPB42,GANC,HAUS2,HYPK,JMJD7,JMJD7-PLA2G4B,LCMT2,LRRC57,MAP1A,MAPKBP1,MFAP1,MGA,PDIA3,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PPIP5K1,SERF2,SERINC4,SNAP23,SPTBN5,STARD9,STRC,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TTBK2,TUBGCP4,TYRO3,UBR1,VPS39,WDR76,ZNF106,ZSCAN29"
TCGA.AG.A01W.01A	15	41884575	42644010	63	-0.2363	NEUTRAL	NA	13	"EHD4,GANC,JMJD7,JMJD7-PLA2G4B,MAPKBP1,MGA,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,SPTBN5,TMEM87A,VPS39"
TCGA.AG.4009.01A	15	41961066	42058530	24	0.0758	NEUTRAL	NA	1	MGA
TCGA.AF.3914.01A	15	41961066	43021223	303	0.0269	NEUTRAL	NA	20	"CAPN3,CDAN1,EHD4,GANC,HAUS2,JMJD7,JMJD7-PLA2G4B,LRRC57,MAPKBP1,MGA,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,SNAP23,SPTBN5,STARD9,TMEM87A,VPS39,ZNF106"
TCGA.AG.A015.01A	15	41961066	74912333	2987	-0.1451	NEUTRAL	NA	261	Too-Many
TCGA.A6.3810.01A	15	41961066	102462347	5031	-0.2421	NEUTRAL	NA	446	Too-Many
TCGA.AG.3909.01A	15	41983731	42041297	15	-0.2184	NEUTRAL	NA	1	MGA
TCGA.AA.A010.01A	15	42032102	42049912	6	0.1576	NEUTRAL	NA	1	MGA
TCGA.AA.A00N.01A	15	42046583	42282289	121	-0.3663	NEUTRAL	NA	8	"EHD4,JMJD7,JMJD7-PLA2G4B,MAPKBP1,MGA,PLA2G4B,PLA2G4E,SPTBN5"
TCGA.AG.4009.01A	15	42067423	42146928	49	0.3621	NEUTRAL	NA	5	"JMJD7,JMJD7-PLA2G4B,MAPKBP1,PLA2G4B,SPTBN5"
TCGA.AG.3909.01A	15	42091965	42111724	19	-0.0409	NEUTRAL	NA	1	MAPKBP1
TCGA.AA.A010.01A	15	42091965	42114125	22	0.2825	NEUTRAL	NA	1	MAPKBP1
TCGA.AA.A02R.01A	15	42107447	102462347	4366	-0.0502	NEUTRAL	NA	445	Too-Many
TCGA.CK.5914.01A	15	42110155	42201860	87	-0.5085	NEUTRAL	NA	6	"EHD4,JMJD7,JMJD7-PLA2G4B,MAPKBP1,PLA2G4B,SPTBN5"
TCGA.AA.A00L.01A	15	42114125	42298170	31	0.2603	NEUTRAL	NA	7	"EHD4,JMJD7,JMJD7-PLA2G4B,MAPKBP1,PLA2G4B,PLA2G4E,SPTBN5"
TCGA.AA.3930.01A	15	42117385	42171885	51	-0.2254	NEUTRAL	NA	5	"JMJD7,JMJD7-PLA2G4B,MAPKBP1,PLA2G4B,SPTBN5"
TCGA.AA.3862.01A	15	42120253	43852604	470	-0.1936	NEUTRAL	NA	32	"ADAL,CAPN3,CCNDBP1,CDAN1,EHD4,EPB42,GANC,HAUS2,JMJD7,JMJD7-PLA2G4B,LCMT2,LRRC57,MAP1A,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PPIP5K1,SNAP23,SPTBN5,STARD9,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TTBK2,TUBGCP4,UBR1,VPS39,ZNF106,ZSCAN29"
TCGA.AA.A01Q.01A	15	42126891	42137807	15	-0.4365	NEUTRAL	NA	3	"JMJD7,JMJD7-PLA2G4B,PLA2G4B"
TCGA.AA.A010.01A	15	42127716	42299885	94	-0.1659	NEUTRAL	NA	6	"EHD4,JMJD7,JMJD7-PLA2G4B,PLA2G4B,PLA2G4E,SPTBN5"
TCGA.AA.A01Q.01A	15	42143028	42363975	22	0.2737	NEUTRAL	NA	4	"EHD4,PLA2G4D,PLA2G4E,SPTBN5"
TCGA.AG.3909.01A	15	42143028	42379761	72	-0.5134	NEUTRAL	NA	4	"EHD4,PLA2G4D,PLA2G4E,SPTBN5"
TCGA.AG.4009.01A	15	42147381	42299885	43	-0.1731	NEUTRAL	NA	3	"EHD4,PLA2G4E,SPTBN5"
TCGA.DC.4745	15	42149471	57878810	4588	0.1385	NEUTRAL	NA	122	Too-Many
TCGA.AG.A02G.01A	15	42153555	75641210	3013	-0.4318	NEUTRAL	NA	275	Too-Many
TCGA.AA.3930.01A	15	42172310	43852604	423	0.116	NEUTRAL	NA	29	"ADAL,CAPN3,CCNDBP1,CDAN1,EHD4,EPB42,GANC,HAUS2,LCMT2,LRRC57,MAP1A,PLA2G4D,PLA2G4E,PLA2G4F,PPIP5K1,SNAP23,SPTBN5,STARD9,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TTBK2,TUBGCP4,UBR1,VPS39,ZNF106,ZSCAN29"
TCGA.A6.3808.01A	15	42180076	42727534	165	0.2669	NEUTRAL	NA	10	"CAPN3,EHD4,GANC,PLA2G4D,PLA2G4E,PLA2G4F,SPTBN5,TMEM87A,VPS39,ZNF106"
TCGA.D5.6929	15	42186481	102400036	19500	-0.0298	NEUTRAL	NA	439	Too-Many
TCGA.CK.5914.01A	15	42211361	42379761	41	-0.1357	NEUTRAL	NA	3	"EHD4,PLA2G4D,PLA2G4E"
TCGA.AA.A00N.01A	15	42284914	42386559	31	0.1843	NEUTRAL	NA	2	"PLA2G4D,PLA2G4E"
TCGA.AG.4009.01A	15	42302255	42853421	158	0.1618	NEUTRAL	NA	11	"CAPN3,GANC,HAUS2,LRRC57,PLA2G4D,PLA2G4E,PLA2G4F,SNAP23,TMEM87A,VPS39,ZNF106"
TCGA.AA.A01Q.01A	15	42364422	42379451	11	-0.3769	NEUTRAL	NA	1	PLA2G4D
TCGA.AA.A01Q.01A	15	42379761	45392893	519	0.1408	NEUTRAL	NA	48	"ADAL,B2M,C15orf43,CAPN3,CASC4,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,CTDSPL2,DUOX2,EIF3J,ELL3,EPB42,FRMD5,GANC,HAUS2,HYPK,LCMT2,LRRC57,MAP1A,MFAP1,PATL2,PDIA3,PLA2G4D,PLA2G4F,PPIP5K1,SERF2,SERINC4,SNAP23,SORD,SPG11,STARD9,STRC,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TRIM69,TTBK2,TUBGCP4,UBR1,VPS39,WDR76,ZNF106,ZSCAN29"
TCGA.AG.3909.01A	15	42386559	42455482	21	0.0431	NEUTRAL	NA	3	"PLA2G4D,PLA2G4F,VPS39"
TCGA.AG.A02X.01A	15	42439274	43891305	348	-0.3379	NEUTRAL	NA	26	"ADAL,CAPN3,CCNDBP1,CDAN1,CKMT1B,EPB42,GANC,HAUS2,LCMT2,LRRC57,MAP1A,PLA2G4F,PPIP5K1,SNAP23,STARD9,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TTBK2,TUBGCP4,UBR1,VPS39,ZNF106,ZSCAN29"
TCGA.AG.A00C.01A	15	42455482	43270015	163	-0.0315	NEUTRAL	NA	12	"CAPN3,CDAN1,GANC,HAUS2,LRRC57,SNAP23,STARD9,TMEM87A,TTBK2,UBR1,VPS39,ZNF106"
TCGA.AG.3909.01A	15	42455782	42635218	57	-0.3023	NEUTRAL	NA	3	"GANC,TMEM87A,VPS39"
TCGA.AA.3850	15	42502017	42579947	16	0.11275	NEUTRAL	NA	2	"GANC,TMEM87A"
TCGA.CK.5914.01A	15	42503828	42584883	25	-0.2096	NEUTRAL	NA	2	"GANC,TMEM87A"
TCGA.AA.3811	15	42584060	46244826	661	0.153	NEUTRAL	NA	55	"ADAL,B2M,BLOC1S6,C15orf43,C15orf48,CAPN3,CASC4,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EIF3J,ELL3,EPB42,FRMD5,GANC,GATM,HAUS2,HYPK,LCMT2,LRRC57,MAP1A,MFAP1,PATL2,PDIA3,PPIP5K1,SERF2,SERINC4,SHF,SLC28A2,SLC30A4,SNAP23,SORD,SPATA5L1,SPG11,SQRDL,STARD9,STRC,TGM5,TGM7,TMEM62,TP53BP1,TRIM69,TTBK2,TUBGCP4,UBR1,WDR76,ZNF106,ZSCAN29"
TCGA.AA.3850	15	42585437	46161792	622	0.29525	NEUTRAL	NA	55	"ADAL,B2M,BLOC1S6,C15orf43,C15orf48,CAPN3,CASC4,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EIF3J,ELL3,EPB42,FRMD5,GANC,GATM,HAUS2,HYPK,LCMT2,LRRC57,MAP1A,MFAP1,PATL2,PDIA3,PPIP5K1,SERF2,SERINC4,SHF,SLC28A2,SLC30A4,SNAP23,SORD,SPATA5L1,SPG11,SQRDL,STARD9,STRC,TGM5,TGM7,TMEM62,TP53BP1,TRIM69,TTBK2,TUBGCP4,UBR1,WDR76,ZNF106,ZSCAN29"
TCGA.AA.3982	15	42585437	46242726	659	-0.0474	NEUTRAL	NA	55	"ADAL,B2M,BLOC1S6,C15orf43,C15orf48,CAPN3,CASC4,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EIF3J,ELL3,EPB42,FRMD5,GANC,GATM,HAUS2,HYPK,LCMT2,LRRC57,MAP1A,MFAP1,PATL2,PDIA3,PPIP5K1,SERF2,SERINC4,SHF,SLC28A2,SLC30A4,SNAP23,SORD,SPATA5L1,SPG11,SQRDL,STARD9,STRC,TGM5,TGM7,TMEM62,TP53BP1,TRIM69,TTBK2,TUBGCP4,UBR1,WDR76,ZNF106,ZSCAN29"
TCGA.AA.A00Q.01A	15	42600372	43237476	98	0.3384	NEUTRAL	NA	10	"CAPN3,CDAN1,GANC,HAUS2,LRRC57,SNAP23,STARD9,TTBK2,UBR1,ZNF106"
TCGA.AG.3909.01A	15	42637892	42703861	27	0.1698	NEUTRAL	NA	2	"CAPN3,GANC"
TCGA.AG.A01W.01A	15	42663267	42679916	10	-0.0372	NEUTRAL	NA	1	CAPN3
TCGA.AG.A01W.01A	15	42685463	42712979	13	-0.4569	NEUTRAL	NA	2	"CAPN3,ZNF106"
TCGA.CK.5914.01A	15	42702564	42731184	16	0.2267	NEUTRAL	NA	2	"CAPN3,ZNF106"
TCGA.AG.3909.01A	15	42709434	42749134	19	-0.173	NEUTRAL	NA	1	ZNF106
TCGA.AG.A01W.01A	15	42728340	42736549	4	0.0281	NEUTRAL	NA	1	ZNF106
TCGA.A6.3808.01A	15	42729403	43501465	141	-0.4483	NEUTRAL	NA	11	"CCNDBP1,CDAN1,EPB42,HAUS2,LRRC57,SNAP23,STARD9,TMEM62,TTBK2,UBR1,ZNF106"
TCGA.AG.A01W.01A	15	42749216	43354838	123	-0.0578	NEUTRAL	NA	8	"CDAN1,HAUS2,LRRC57,SNAP23,STARD9,TTBK2,UBR1,ZNF106"
TCGA.AY.4070	15	42815732	102400036	19248	0	NEUTRAL	NA	430	Too-Many
TCGA.AA.3872	15	42815879	63831983	7014	-0.2617	NEUTRAL	NA	144	Too-Many
TCGA.AA.A02K.01A	15	42966595	42986677	10	-0.1066	NEUTRAL	NA	1	STARD9
TCGA.A6.A56B	15	42971514	43620072	81	-0.4804	NEUTRAL	NA	10	"CCNDBP1,CDAN1,EPB42,LCMT2,STARD9,TGM5,TGM7,TMEM62,TTBK2,UBR1"
TCGA.AA.A00N.01A	15	43016642	43044175	23	-0.4709	NEUTRAL	NA	2	"CDAN1,TTBK2"
TCGA.AA.A00D.01A	15	43016642	43237476	25	-0.0807	NEUTRAL	NA	3	"CDAN1,TTBK2,UBR1"
TCGA.AA.A00L.01A	15	43016642	43244424	26	0.1662	NEUTRAL	NA	3	"CDAN1,TTBK2,UBR1"
TCGA.AA.A02F.01A	15	43024478	89007914	3394	0.0769	NEUTRAL	NA	352	Too-Many
TCGA.CK.5914.01A	15	43029154	43262685	23	0.0389	NEUTRAL	NA	3	"CDAN1,TTBK2,UBR1"
TCGA.AA.A00N.01A	15	43067346	43268867	21	0.3719	NEUTRAL	NA	2	"TTBK2,UBR1"
TCGA.AG.4009.01A	15	43067346	43277016	24	0.002	NEUTRAL	NA	2	"TTBK2,UBR1"
TCGA.AF.3914.01A	15	43067346	43873149	193	-0.0631	NEUTRAL	NA	14	"ADAL,CCNDBP1,EPB42,LCMT2,MAP1A,PPIP5K1,TGM5,TGM7,TMEM62,TP53BP1,TTBK2,TUBGCP4,UBR1,ZSCAN29"
TCGA.AA.A010.01A	15	43075600	43276057	21	0.2034	NEUTRAL	NA	2	"TTBK2,UBR1"
TCGA.AA.A00N.01A	15	43270015	43276057	2	-0.4426	NEUTRAL	NA	1	UBR1
TCGA.CK.5914.01A	15	43313426	43352181	21	-0.2221	NEUTRAL	NA	1	UBR1
TCGA.AG.A00C.01A	15	43316980	43348495	15	0.0473	NEUTRAL	NA	1	UBR1
TCGA.AG.4009.01A	15	43318717	43430758	26	-0.478	NEUTRAL	NA	2	"TMEM62,UBR1"
TCGA.AA.A00Q.01A	15	43360058	43584127	64	0.2113	NEUTRAL	NA	6	"CCNDBP1,EPB42,TGM5,TGM7,TMEM62,UBR1"
TCGA.AA.A010.01A	15	43362981	43427660	7	0.1637	NEUTRAL	NA	2	"TMEM62,UBR1"
TCGA.AA.A010.01A	15	43470753	43500377	20	0.1021	NEUTRAL	NA	3	"CCNDBP1,EPB42,TMEM62"
TCGA.G4.6294	15	43473152	102400036	19260	-0.0329	NEUTRAL	NA	423	Too-Many
TCGA.AG.4009.01A	15	43482211	43495273	10	-0.2864	NEUTRAL	NA	2	"CCNDBP1,EPB42"
TCGA.AG.A01W.01A	15	43489811	43685878	24	-0.2141	NEUTRAL	NA	7	"ADAL,EPB42,LCMT2,TGM5,TGM7,TUBGCP4,ZSCAN29"
TCGA.CK.5914.01A	15	43493990	43548719	21	-0.4391	NEUTRAL	NA	2	"EPB42,TGM5"
TCGA.AG.A00C.01A	15	43493990	43701805	73	0.12	NEUTRAL	NA	8	"ADAL,EPB42,LCMT2,TGM5,TGM7,TP53BP1,TUBGCP4,ZSCAN29"
TCGA.AG.4009.01A	15	43498501	43508418	9	0.0406	NEUTRAL	NA	1	EPB42
TCGA.AA.A00D.01A	15	43499407	43621006	34	-0.0515	NEUTRAL	NA	4	"EPB42,LCMT2,TGM5,TGM7"
TCGA.AA.A010.01A	15	43500835	43548719	16	0.3662	NEUTRAL	NA	2	"EPB42,TGM5"
TCGA.AG.4009.01A	15	43512886	43527627	5	-0.3032	NEUTRAL	NA	2	"EPB42,TGM5"
TCGA.AG.3909.01A	15	43527627	43574664	14	-0.1966	NEUTRAL	NA	2	"TGM5,TGM7"
TCGA.AG.4009.01A	15	43530985	43890360	98	0.1337	NEUTRAL	NA	10	"ADAL,CKMT1B,LCMT2,MAP1A,PPIP5K1,TGM5,TGM7,TP53BP1,TUBGCP4,ZSCAN29"
TCGA.CK.5914.01A	15	43552222	43574664	8	0.2336	NEUTRAL	NA	2	"TGM5,TGM7"
TCGA.A6.3808.01A	15	43579426	43678367	32	-0.3921	NEUTRAL	NA	5	"ADAL,LCMT2,TGM7,TUBGCP4,ZSCAN29"
TCGA.A6.A56B	15	43620442	45273869	230	0.0359	NEUTRAL	NA	27	"ADAL,B2M,C15orf43,CASC4,CATSPER2,CKMT1A,CKMT1B,CTDSPL2,EIF3J,ELL3,FRMD5,HYPK,LCMT2,MAP1A,MFAP1,PATL2,PDIA3,PPIP5K1,SERF2,SERINC4,SPG11,STRC,TP53BP1,TRIM69,TUBGCP4,WDR76,ZSCAN29"
TCGA.AA.A00A.01A	15	43653244	43696564	8	-0.11	NEUTRAL	NA	2	"TUBGCP4,ZSCAN29"
TCGA.AA.A00D.01A	15	43653244	43696564	8	0.0383	NEUTRAL	NA	2	"TUBGCP4,ZSCAN29"
TCGA.AA.A00L.01A	15	43653244	43724362	22	0.1823	NEUTRAL	NA	3	"TP53BP1,TUBGCP4,ZSCAN29"
TCGA.AA.A00Q.01A	15	43653244	43826865	41	0.1931	NEUTRAL	NA	5	"MAP1A,PPIP5K1,TP53BP1,TUBGCP4,ZSCAN29"
TCGA.CK.5914.01A	15	43675459	43739007	30	0.297	NEUTRAL	NA	2	"TP53BP1,TUBGCP4"
TCGA.AG.3909.01A	15	43687232	43730468	22	-0.1165	NEUTRAL	NA	2	"TP53BP1,TUBGCP4"
TCGA.AA.A010.01A	15	43689362	43701805	11	0.0744	NEUTRAL	NA	2	"TP53BP1,TUBGCP4"
TCGA.AA.A00D.01A	15	43699551	43738558	15	-0.3716	NEUTRAL	NA	1	TP53BP1
TCGA.AG.A00C.01A	15	43705300	43720212	8	-0.4336	NEUTRAL	NA	1	TP53BP1
TCGA.AA.A00N.01A	15	43720212	43739007	6	0.3715	NEUTRAL	NA	1	TP53BP1
TCGA.AG.A00C.01A	15	43724362	43902458	47	0.2447	NEUTRAL	NA	5	"CKMT1B,MAP1A,PPIP5K1,STRC,TP53BP1"
TCGA.AG.A01W.01A	15	43738414	48337843	283	0.1234	NEUTRAL	NA	37	"B2M,BLOC1S6,C15orf43,C15orf48,CASC4,CATSPER2,CKMT1A,CKMT1B,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EIF3J,ELL3,FRMD5,GATM,HYPK,MAP1A,MFAP1,PATL2,PDIA3,PPIP5K1,SEMA6D,SERF2,SERINC4,SHF,SLC28A2,SLC30A4,SORD,SPATA5L1,SPG11,SQRDL,STRC,TP53BP1,TRIM69,WDR76"
TCGA.AA.A00N.01A	15	43739539	43748598	3	-0.4147	NEUTRAL	NA	1	TP53BP1
TCGA.AA.A00D.01A	15	43739539	43927876	36	0.2144	NEUTRAL	NA	6	"CATSPER2,CKMT1B,MAP1A,PPIP5K1,STRC,TP53BP1"
TCGA.AA.A00N.01A	15	43784460	43909587	39	-0.3546	NEUTRAL	NA	5	"CKMT1B,MAP1A,PPIP5K1,STRC,TP53BP1"
TCGA.AA.A00L.01A	15	43813585	43826865	5	0.1804	NEUTRAL	NA	2	"MAP1A,PPIP5K1"
TCGA.CK.5914.01A	15	43819334	43873149	7	0.0287	NEUTRAL	NA	2	"MAP1A,PPIP5K1"
TCGA.AA.3980.01A	15	43850981	44038696	41	-0.1726	NEUTRAL	NA	6	"CATSPER2,CKMT1A,CKMT1B,PDIA3,PPIP5K1,STRC"
TCGA.AG.4009.01A	15	43890975	43940068	30	-0.2492	NEUTRAL	NA	3	"CATSPER2,CKMT1B,STRC"
TCGA.CK.5914.01A	15	43892146	43927876	23	0.1164	NEUTRAL	NA	2	"CATSPER2,STRC"
TCGA.AA.3930.01A	15	43892146	45707743	309	0.1159	NEUTRAL	NA	28	"B2M,C15orf43,CASC4,CATSPER2,CKMT1A,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EIF3J,ELL3,FRMD5,GATM,HYPK,MFAP1,PATL2,PDIA3,SERF2,SERINC4,SHF,SLC28A2,SORD,SPATA5L1,SPG11,STRC,TRIM69,WDR76"
TCGA.AF.3914.01A	15	43892417	45388054	191	0.043	NEUTRAL	NA	21	"B2M,C15orf43,CASC4,CATSPER2,CKMT1A,CTDSPL2,DUOX2,EIF3J,ELL3,FRMD5,HYPK,MFAP1,PATL2,PDIA3,SERF2,SERINC4,SORD,SPG11,STRC,TRIM69,WDR76"
TCGA.AG.A02X.01A	15	43892713	91500783	3780	-0.3034	NEUTRAL	NA	375	Too-Many
TCGA.AH.6549.01A	15	43900034	84659797	3480	-0.4107	NEUTRAL	NA	321	Too-Many
TCGA.AG.A00C.01A	15	43903053	43991124	18	-0.1936	NEUTRAL	NA	3	"CATSPER2,CKMT1A,STRC"
TCGA.AA.3861.01A	15	43990190	68599913	2112	-0.0831	NEUTRAL	NA	176	Too-Many
TCGA.A6.3808.01A	15	43990789	44581181	75	-0.4132	NEUTRAL	NA	10	"CASC4,CKMT1A,ELL3,FRMD5,HYPK,MFAP1,PDIA3,SERF2,SERINC4,WDR76"
TCGA.AA.3862.01A	15	43990789	102462347	4313	-0.2624	NEUTRAL	NA	409	Too-Many
TCGA.CK.6746	15	43991013	102400036	19153	0.0104	NEUTRAL	NA	408	Too-Many
TCGA.AG.A011.01A	15	44038696	60646294	1248	-0.336	NEUTRAL	NA	108	Too-Many
TCGA.AA.3980.01A	15	44043709	55670440	988	-0.4969	NEUTRAL	NA	78	"AP4E1,ARPP19,ATP8B4,B2M,BCL2L10,BLOC1S6,C15orf43,C15orf48,CASC4,CCPG1,CEP152,COPS2,CTDSPL2,CTXN2,CYP19A1,DMXL2,DTWD1,DUOX1,DUOX2,DUOXA1,DUOXA2,DUT,EID1,EIF3J,ELL3,FAM214A,FAM227B,FBN1,FGF7,FRMD5,GABPB1,GALK2,GATM,GLDN,GNB5,HDC,HYPK,LEO1,LYSMD2,MAPK6,MFAP1,MYEF2,MYO5A,MYO5C,ONECUT1,PATL2,PDIA3,PIGB,PIGBOS1,RAB27A,RSL24D1,SCG3,SECISBP2L,SEMA6D,SERF2,SERINC4,SHC4,SHF,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SORD,SPATA5L1,SPG11,SPPL2A,SQRDL,TMOD2,TMOD3,TNFAIP8L3,TRIM69,TRPM7,UNC13C,USP50,USP8,WDR72,WDR76"
TCGA.AG.4009.01A	15	44045975	44581181	64	0.2884	NEUTRAL	NA	9	"CASC4,ELL3,FRMD5,HYPK,MFAP1,PDIA3,SERF2,SERINC4,WDR76"
TCGA.AY.4071	15	44058633	56960625	3905	0.1953	NEUTRAL	NA	87	"AP4E1,ARPP19,ATP8B4,B2M,BCL2L10,BLOC1S6,C15orf43,C15orf48,C15orf65,CASC4,CCPG1,CEP152,COPS2,CTDSPL2,CTXN2,CYP19A1,DMXL2,DTWD1,DUOX1,DUOX2,DUOXA1,DUOXA2,DUT,DYX1C1,EID1,EIF3J,ELL3,FAM214A,FAM227B,FBN1,FGF7,FRMD5,GABPB1,GALK2,GATM,GLDN,GNB5,HDC,HYPK,LEO1,LYSMD2,MAPK6,MFAP1,MNS1,MYEF2,MYO5A,MYO5C,NEDD4,ONECUT1,PATL2,PDIA3,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RFX7,RSL24D1,SCG3,SECISBP2L,SEMA6D,SERF2,SERINC4,SHC4,SHF,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SORD,SPATA5L1,SPG11,SPPL2A,SQRDL,TEX9,TMOD2,TMOD3,TNFAIP8L3,TRIM69,TRPM7,UNC13C,USP50,USP8,WDR72,WDR76,ZNF280D"
TCGA.CM.5864	15	44063858	102400036	19149	-0.093	NEUTRAL	NA	407	Too-Many
TCGA.AA.A00D.01A	15	44065264	44149117	35	0.3327	NEUTRAL	NA	6	"ELL3,HYPK,MFAP1,SERF2,SERINC4,WDR76"
TCGA.AA.A00Q.01A	15	44066353	44084479	6	-0.2087	NEUTRAL	NA	2	"ELL3,SERF2"
TCGA.AG.3909.01A	15	44068634	44093270	15	-0.4086	NEUTRAL	NA	4	"ELL3,HYPK,SERF2,SERINC4"
TCGA.AG.A00C.01A	15	44068634	44093270	15	0.0387	NEUTRAL	NA	4	"ELL3,HYPK,SERF2,SERINC4"
TCGA.AA.A00N.01A	15	44068634	44134596	32	-0.4028	NEUTRAL	NA	6	"ELL3,HYPK,MFAP1,SERF2,SERINC4,WDR76"
TCGA.AG.A00C.01A	15	44093670	44143238	16	0.3717	NEUTRAL	NA	3	"HYPK,MFAP1,WDR76"
TCGA.AA.3509.01A	15	44093670	44884477	77	-0.4592	NEUTRAL	NA	8	"CASC4,CTDSPL2,EIF3J,FRMD5,HYPK,MFAP1,SPG11,WDR76"
TCGA.AG.3909.01A	15	44134596	44941024	82	-0.2854	NEUTRAL	NA	6	"CASC4,CTDSPL2,EIF3J,FRMD5,SPG11,WDR76"
TCGA.3L.AA1B	15	44134921	102400036	19168	0.1196	NEUTRAL	NA	401	Too-Many
TCGA.AA.A00N.01A	15	44136047	44791872	38	0.2816	NEUTRAL	NA	4	"CASC4,CTDSPL2,FRMD5,WDR76"
TCGA.AG.3891.01A	15	44149117	45567582	199	0.1068	NEUTRAL	NA	17	"B2M,C15orf43,CASC4,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EIF3J,FRMD5,PATL2,SHF,SLC28A2,SORD,SPG11,TRIM69,WDR76"
TCGA.AG.A00C.01A	15	44149117	45695151	208	0.042	NEUTRAL	NA	19	"B2M,C15orf43,CASC4,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EIF3J,FRMD5,GATM,PATL2,SHF,SLC28A2,SORD,SPATA5L1,SPG11,TRIM69,WDR76"
TCGA.AA.A00D.01A	15	44150817	44581181	17	-0.0717	NEUTRAL	NA	3	"CASC4,FRMD5,WDR76"
TCGA.AY.A71X	15	44491603	102400036	19109	-0.0248	NEUTRAL	NA	399	Too-Many
TCGA.AG.4009.01A	15	44615119	44846701	23	-0.1135	NEUTRAL	NA	3	"CASC4,CTDSPL2,EIF3J"
TCGA.CK.5914.01A	15	44615119	45335433	97	-0.1166	NEUTRAL	NA	9	"B2M,C15orf43,CASC4,CTDSPL2,EIF3J,PATL2,SORD,SPG11,TRIM69"
TCGA.AG.3611.01A	15	44629923	44695074	5	0.3365	NEUTRAL	NA	1	CASC4
TCGA.AG.3611.01A	15	44705483	50596126	458	-0.3975	NEUTRAL	NA	41	"ATP8B4,B2M,BLOC1S6,C15orf43,C15orf48,CASC4,CEP152,COPS2,CTDSPL2,CTXN2,DTWD1,DUOX1,DUOX2,DUOXA1,DUOXA2,DUT,EID1,EIF3J,FAM227B,FBN1,FGF7,GABPB1,GALK2,GATM,HDC,MYEF2,PATL2,SECISBP2L,SEMA6D,SHC4,SHF,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SORD,SPATA5L1,SPG11,SQRDL,TRIM69"
TCGA.A6.3808.01A	15	44849640	44958538	45	-0.5008	NEUTRAL	NA	3	"EIF3J,PATL2,SPG11"
TCGA.AG.4009.01A	15	44849640	45364473	66	0.109	NEUTRAL	NA	7	"B2M,C15orf43,EIF3J,PATL2,SORD,SPG11,TRIM69"
TCGA.AA.A00N.01A	15	44852429	44856748	4	-0.0405	NEUTRAL	NA	2	"EIF3J,SPG11"
TCGA.AA.A00D.01A	15	44858001	45567582	142	-0.0095	NEUTRAL	NA	12	"B2M,C15orf43,DUOX1,DUOX2,DUOXA1,DUOXA2,PATL2,SHF,SLC28A2,SORD,SPG11,TRIM69"
TCGA.AA.3509.01A	15	44887425	48056000	206	-0.0474	NEUTRAL	NA	19	"B2M,BLOC1S6,C15orf43,C15orf48,DUOX1,DUOX2,DUOXA1,DUOXA2,GATM,PATL2,SEMA6D,SHF,SLC28A2,SLC30A4,SORD,SPATA5L1,SPG11,SQRDL,TRIM69"
TCGA.AA.A00L.01A	15	44955538	45248870	13	0.2663	NEUTRAL	NA	4	"B2M,PATL2,SPG11,TRIM69"
TCGA.AG.3909.01A	15	44955538	45398271	42	-0.2696	NEUTRAL	NA	7	"B2M,C15orf43,DUOX2,PATL2,SORD,SPG11,TRIM69"
TCGA.AA.A00N.01A	15	44964176	45389812	37	0.3778	NEUTRAL	NA	6	"B2M,C15orf43,DUOX2,PATL2,SORD,TRIM69"
TCGA.A6.2678	15	44973787	102400036	19074	-0.066	NEUTRAL	NA	394	Too-Many
TCGA.AA.3977	15	45014660	45072081	24	-0.2642	NEUTRAL	NA	1	TRIM69
TCGA.AA.3977	15	45079366	46265914	322	0.149	NEUTRAL	NA	14	"BLOC1S6,C15orf43,C15orf48,DUOX1,DUOX2,DUOXA1,DUOXA2,GATM,SHF,SLC28A2,SLC30A4,SORD,SPATA5L1,SQRDL"
TCGA.AA.3848	15	45190795	102400036	19021	-0.1604	NEUTRAL	NA	392	Too-Many
TCGA.A6.A56B	15	45317914	52539672	2139	0.3147	NEUTRAL	NA	51	"AP4E1,ATP8B4,BCL2L10,BLOC1S6,C15orf48,CEP152,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUOX1,DUOX2,DUOXA1,DUOXA2,DUT,EID1,FAM227B,FBN1,FGF7,GABPB1,GALK2,GATM,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MYEF2,MYO5C,SCG3,SECISBP2L,SEMA6D,SHC4,SHF,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SORD,SPATA5L1,SPPL2A,SQRDL,TMOD2,TMOD3,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AG.4009.01A	15	45365516	45393348	13	-0.1894	NEUTRAL	NA	2	"DUOX2,SORD"
TCGA.AA.A00L.01A	15	45387137	45697516	94	0.2406	NEUTRAL	NA	8	"DUOX1,DUOX2,DUOXA1,DUOXA2,GATM,SHF,SLC28A2,SPATA5L1"
TCGA.AA.A010.01A	15	45390131	45402848	18	-0.16	NEUTRAL	NA	1	DUOX2
TCGA.AG.A00Y.01A	15	45391529	102462347	3954	-0.4072	NEUTRAL	NA	391	Too-Many
TCGA.CK.5914.01A	15	45396113	45470351	64	-0.3738	NEUTRAL	NA	5	"DUOX1,DUOX2,DUOXA1,DUOXA2,SHF"
TCGA.AA.A01I.01A	15	45397804	62148434	1114	-0.1247	NEUTRAL	NA	94	"ADAM10,ALDH1A2,ANXA2,AP4E1,AQP9,ARPP19,ATP8B4,BCL2L10,BLOC1S6,BNIP2,C15orf48,C15orf65,CCNB2,CCPG1,CEP152,CGNL1,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUOX1,DUOX2,DUOXA1,DUOXA2,DUT,DYX1C1,EID1,FAM214A,FAM227B,FAM63B,FAM81A,FBN1,FGF7,FOXB1,GABPB1,GALK2,GATM,GCNT3,GCOM1,GLDN,GNB5,GTF2A2,HDC,ICE2,LDHAL6B,LEO1,LIPC,LYSMD2,MAPK6,MNS1,MYEF2,MYO1E,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RORA,RSL24D1,SCG3,SECISBP2L,SEMA6D,SHC4,SHF,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SLTM,SPATA5L1,SPPL2A,SQRDL,TCF12,TEX9,TMOD2,TMOD3,TNFAIP8L3,TRPM7,UNC13C,USP50,USP8,VPS13C,WDR72,ZNF280D"
TCGA.AA.A010.01A	15	45403277	45409317	10	0.3723	NEUTRAL	NA	2	"DUOX2,DUOXA2"
TCGA.AF.3914.01A	15	45407929	45447952	36	-0.0137	NEUTRAL	NA	3	"DUOX1,DUOXA1,DUOXA2"
TCGA.AG.A016.01A	15	45411314	45658551	60	-0.0534	NEUTRAL	NA	5	"DUOX1,DUOXA1,GATM,SHF,SLC28A2"
TCGA.AG.4009.01A	15	45415027	45444446	23	-0.2305	NEUTRAL	NA	2	"DUOX1,DUOXA1"
TCGA.AA.A02H.01A	15	45437052	45697516	46	0.1196	NEUTRAL	NA	5	"DUOX1,GATM,SHF,SLC28A2,SPATA5L1"
TCGA.AG.3906.01A	15	45442778	45470351	16	0.2514	NEUTRAL	NA	2	"DUOX1,SHF"
TCGA.AF.3914.01A	15	45465723	63351715	1217	-0.0191	NEUTRAL	NA	94	"ADAM10,ALDH1A2,ANXA2,AP4E1,AQP9,ARPP19,ATP8B4,BCL2L10,BLOC1S6,BNIP2,C15orf48,C15orf65,C2CD4A,C2CD4B,CCNB2,CCPG1,CEP152,CGNL1,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUT,DYX1C1,EID1,FAM214A,FAM227B,FAM63B,FAM81A,FBN1,FGF7,FOXB1,GABPB1,GALK2,GATM,GCNT3,GCOM1,GLDN,GNB5,GTF2A2,HDC,ICE2,LDHAL6B,LEO1,LIPC,LYSMD2,MAPK6,MNS1,MYEF2,MYO1E,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RORA,RSL24D1,SCG3,SECISBP2L,SEMA6D,SHC4,SHF,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SLTM,SPATA5L1,SPPL2A,SQRDL,TCF12,TEX9,TLN2,TMOD2,TMOD3,TNFAIP8L3,TPM1,TRPM7,UNC13C,USP50,USP8,VPS13C,WDR72,ZNF280D"
TCGA.AA.A00N.01A	15	45490998	45564820	15	0.0429	NEUTRAL	NA	2	"SHF,SLC28A2"
TCGA.AG.3909.01A	15	45490998	45564820	15	-0.2564	NEUTRAL	NA	2	"SHF,SLC28A2"
TCGA.CK.5914.01A	15	45490998	45564820	15	0.285	NEUTRAL	NA	2	"SHF,SLC28A2"
TCGA.AG.4009.01A	15	45545354	45567582	15	1.00E-04	NEUTRAL	NA	1	SLC28A2
TCGA.AA.A01Q.01A	15	45545354	50540394	300	0.0696	NEUTRAL	NA	26	"ATP8B4,BLOC1S6,C15orf48,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,GATM,HDC,MYEF2,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SPATA5L1,SQRDL"
TCGA.AG.A025.01A	15	45567582	102462347	3889	-0.0903	NEUTRAL	NA	386	Too-Many
TCGA.EI.6882	15	45571385	102400036	18893	0.0131	NEUTRAL	NA	384	Too-Many
TCGA.AG.3891.01A	15	45654256	45695151	10	-0.3398	NEUTRAL	NA	2	"GATM,SPATA5L1"
TCGA.AG.A016.01A	15	45668802	62944187	1125	-0.099	NEUTRAL	NA	91	"ADAM10,ALDH1A2,ANXA2,AP4E1,AQP9,ARPP19,ATP8B4,BCL2L10,BLOC1S6,BNIP2,C15orf48,C15orf65,C2CD4A,C2CD4B,CCNB2,CCPG1,CEP152,CGNL1,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUT,DYX1C1,EID1,FAM214A,FAM227B,FAM63B,FAM81A,FBN1,FGF7,FOXB1,GABPB1,GALK2,GATM,GCNT3,GCOM1,GLDN,GNB5,GTF2A2,HDC,ICE2,LDHAL6B,LEO1,LIPC,LYSMD2,MAPK6,MNS1,MYEF2,MYO1E,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RORA,RSL24D1,SCG3,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5,SLC27A2,SLC30A4,SLTM,SPATA5L1,SPPL2A,SQRDL,TCF12,TEX9,TLN2,TMOD2,TMOD3,TNFAIP8L3,TRPM7,UNC13C,USP50,USP8,VPS13C,WDR72,ZNF280D"
TCGA.AG.4009.01A	15	45694581	60641226	1000	-0.0209	NEUTRAL	NA	84	"ADAM10,ALDH1A2,ANXA2,AP4E1,AQP9,ARPP19,ATP8B4,BCL2L10,BLOC1S6,BNIP2,C15orf48,C15orf65,CCNB2,CCPG1,CEP152,CGNL1,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUT,DYX1C1,EID1,FAM214A,FAM227B,FAM63B,FAM81A,FBN1,FGF7,FOXB1,GABPB1,GALK2,GCNT3,GCOM1,GLDN,GNB5,GTF2A2,HDC,LDHAL6B,LEO1,LIPC,LYSMD2,MAPK6,MNS1,MYEF2,MYO1E,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RSL24D1,SCG3,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5,SLC27A2,SLC30A4,SLTM,SPATA5L1,SPPL2A,SQRDL,TCF12,TEX9,TMOD2,TMOD3,TNFAIP8L3,TRPM7,UNC13C,USP50,USP8,WDR72,ZNF280D"
TCGA.AG.3891.01A	15	45697516	48431119	51	0.0634	NEUTRAL	NA	7	"BLOC1S6,C15orf48,SEMA6D,SLC24A5,SLC30A4,SPATA5L1,SQRDL"
TCGA.AA.A02H.01A	15	45702518	45954126	24	-0.2911	NEUTRAL	NA	5	"BLOC1S6,C15orf48,SLC30A4,SPATA5L1,SQRDL"
TCGA.AA.3930.01A	15	45709425	48053109	34	0.3569	NEUTRAL	NA	6	"BLOC1S6,C15orf48,SEMA6D,SLC30A4,SPATA5L1,SQRDL"
TCGA.AA.A00N.01A	15	45777313	48055191	30	-0.2509	NEUTRAL	NA	4	"BLOC1S6,SEMA6D,SLC30A4,SQRDL"
TCGA.AG.3909.01A	15	45777313	48624412	84	-0.3879	NEUTRAL	NA	9	"BLOC1S6,CTXN2,DUT,MYEF2,SEMA6D,SLC12A1,SLC24A5,SLC30A4,SQRDL"
TCGA.AG.A00C.01A	15	45777313	52545477	541	-0.0947	NEUTRAL	NA	41	"AP4E1,ATP8B4,BCL2L10,BLOC1S6,CEP152,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GABPB1,GALK2,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MYEF2,MYO5C,SCG3,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5,SLC27A2,SLC30A4,SPPL2A,SQRDL,TMOD2,TMOD3,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AA.A01K.01A	15	45777313	102462347	3706	-0.1055	NEUTRAL	NA	382	Too-Many
TCGA.AA.A00D.01A	15	45814110	45980469	15	0.182	NEUTRAL	NA	3	"BLOC1S6,SLC30A4,SQRDL"
TCGA.CK.5914.01A	15	45847659	45983102	16	0.0717	NEUTRAL	NA	2	"BLOC1S6,SQRDL"
TCGA.AA.A00L.01A	15	45951090	48551347	61	0.276	NEUTRAL	NA	6	"CTXN2,MYEF2,SEMA6D,SLC12A1,SLC24A5,SQRDL"
TCGA.AA.A02H.01A	15	45962063	48460801	41	0.3507	NEUTRAL	NA	4	"MYEF2,SEMA6D,SLC24A5,SQRDL"
TCGA.AA.A00D.01A	15	45981190	48441168	25	-0.1963	NEUTRAL	NA	4	"MYEF2,SEMA6D,SLC24A5,SQRDL"
TCGA.AA.3941	15	46171249	46244826	38	0.1098	NEUTRAL	NA	0	None
TCGA.AA.3844	15	46251388	50297885	1303	-0.4029	NEUTRAL	NA	17	"ATP8B4,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,MYEF2,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5"
TCGA.AA.3811	15	46251388	50343983	1317	-0.3551	NEUTRAL	NA	17	"ATP8B4,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,MYEF2,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5"
TCGA.AA.3977	15	46275018	46466909	39	-0.0672	NEUTRAL	NA	0	None
TCGA.AA.3851	15	46487891	102400036	18664	-0.0431	NEUTRAL	NA	378	Too-Many
TCGA.AA.3977	15	46528390	47178693	244	-0.1098	NEUTRAL	NA	0	None
TCGA.CM.5348	15	47116647	47642992	146	-0.4887	NEUTRAL	NA	1	SEMA6D
TCGA.AA.3977	15	47186393	47890349	253	-0.1526	NEUTRAL	NA	1	SEMA6D
TCGA.EI.6508	15	47525660	64516483	6188	0.0261	NEUTRAL	NA	100	"ADAM10,ALDH1A2,ANXA2,AP4E1,APH1B,AQP9,ARPP19,ATP8B4,BCL2L10,BNIP2,C15orf65,C2CD4A,C2CD4B,CA12,CCNB2,CCPG1,CEP152,CGNL1,COPS2,CSNK1G1,CTXN2,CYP19A1,DAPK2,DMXL2,DTWD1,DUT,DYX1C1,EID1,FAM214A,FAM227B,FAM63B,FAM81A,FAM96A,FBN1,FBXL22,FGF7,FOXB1,GABPB1,GALK2,GCNT3,GCOM1,GLDN,GNB5,GTF2A2,HDC,HERC1,ICE2,LACTB,LDHAL6B,LEO1,LIPC,LYSMD2,MAPK6,MNS1,MYEF2,MYO1E,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PPIB,PRTG,PYGO1,RAB27A,RAB8B,RFX7,RNF111,RORA,RPS27L,RSL24D1,SCG3,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5,SLC27A2,SLTM,SNX1,SNX22,SPPL2A,TCF12,TEX9,TLN2,TMOD2,TMOD3,TNFAIP8L3,TPM1,TRPM7,UNC13C,USP3,USP50,USP8,VPS13C,WDR72,ZNF280D"
TCGA.D5.6923	15	47525660	66283699	6429	-0.0417	NEUTRAL	NA	127	Too-Many
TCGA.EI.6513	15	47525660	67303986	6859	0.0389	NEUTRAL	NA	135	Too-Many
TCGA.D5.6535	15	47525660	81986162	10901	-0.3419	NEUTRAL	NA	270	Too-Many
TCGA.CI.6622	15	47525660	102400036	18305	0.0009	NEUTRAL	NA	378	Too-Many
TCGA.D5.5538	15	47558849	57094723	3072	0.0166	NEUTRAL	NA	58	"AP4E1,ARPP19,ATP8B4,BCL2L10,C15orf65,CCPG1,CEP152,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUT,DYX1C1,EID1,FAM214A,FAM227B,FBN1,FGF7,GABPB1,GALK2,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MNS1,MYEF2,MYO5A,MYO5C,NEDD4,ONECUT1,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RFX7,RSL24D1,SCG3,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5,SLC27A2,SPPL2A,TEX9,TMOD2,TMOD3,TNFAIP8L3,TRPM7,UNC13C,USP50,USP8,WDR72,ZNF280D"
TCGA.CM.5348	15	47643794	49137178	571	0.2927	NEUTRAL	NA	9	"CEP152,CTXN2,DUT,FBN1,MYEF2,SEMA6D,SHC4,SLC12A1,SLC24A5"
TCGA.AA.3941	15	47645443	50355625	887	-0.0704	NEUTRAL	NA	17	"ATP8B4,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,MYEF2,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5"
TCGA.AA.3850	15	47645891	50189302	820	-0.29495	NEUTRAL	NA	17	"ATP8B4,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,MYEF2,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5"
TCGA.AA.3977	15	47892020	54580785	2206	-0.0073	NEUTRAL	NA	44	"AP4E1,ARPP19,ATP8B4,BCL2L10,CEP152,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUT,EID1,FAM214A,FAM227B,FBN1,FGF7,GABPB1,GALK2,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MYEF2,MYO5A,MYO5C,ONECUT1,SCG3,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5,SLC27A2,SPPL2A,TMOD2,TMOD3,TNFAIP8L3,TRPM7,UNC13C,USP50,USP8,WDR72"
TCGA.AA.3680	15	47999708	102400036	18129	-0.0099	NEUTRAL	NA	378	Too-Many
TCGA.A6.2686	15	48042145	88428701	12501	0.0201	NEUTRAL	NA	303	Too-Many
TCGA.AZ.4684.01A	15	48051948	48494260	37	0.3099	NEUTRAL	NA	4	"CTXN2,MYEF2,SEMA6D,SLC24A5"
TCGA.AA.3930.01A	15	48053807	48413195	11	-0.0186	NEUTRAL	NA	2	"SEMA6D,SLC24A5"
TCGA.CK.4948.01B	15	48056788	48493456	29	0.1717	NEUTRAL	NA	4	"CTXN2,MYEF2,SEMA6D,SLC24A5"
TCGA.AA.A022	15	48089934	102400036	18032	-0.0036	NEUTRAL	NA	377	Too-Many
TCGA.AG.A01W.01A	15	48342674	48563708	21	-0.4241	NEUTRAL	NA	4	"CTXN2,MYEF2,SLC12A1,SLC24A5"
TCGA.AA.3930.01A	15	48414002	48450929	16	-0.3785	NEUTRAL	NA	2	"MYEF2,SLC24A5"
TCGA.AG.3891.01A	15	48433282	48494260	18	-0.4623	NEUTRAL	NA	3	"CTXN2,MYEF2,SLC24A5"
TCGA.AA.A00D.01A	15	48443246	48458100	9	0.2074	NEUTRAL	NA	1	MYEF2
TCGA.AA.3930.01A	15	48451773	57837768	793	0.0285	NEUTRAL	NA	58	"AP4E1,ARPP19,ATP8B4,BCL2L10,C15orf65,CCPG1,CEP152,CGNL1,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUT,DYX1C1,EID1,FAM214A,FAM227B,FBN1,FGF7,GABPB1,GALK2,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MNS1,MYEF2,MYO5A,MYO5C,NEDD4,ONECUT1,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RFX7,RSL24D1,SCG3,SECISBP2L,SHC4,SLC12A1,SLC27A2,SPPL2A,TCF12,TEX9,TMOD2,TMOD3,TNFAIP8L3,TRPM7,UNC13C,USP50,USP8,WDR72,ZNF280D"
TCGA.CK.5914.01A	15	48458100	48703145	39	-0.2837	NEUTRAL	NA	5	"CTXN2,DUT,FBN1,MYEF2,SLC12A1"
TCGA.AA.A010.01A	15	48458100	49254588	137	0.231	NEUTRAL	NA	8	"CEP152,CTXN2,DUT,EID1,FBN1,MYEF2,SHC4,SLC12A1"
TCGA.AA.A00D.01A	15	48459476	48551347	20	-0.2599	NEUTRAL	NA	3	"CTXN2,MYEF2,SLC12A1"
TCGA.AA.3509.01A	15	48460801	50474598	220	0.3333	NEUTRAL	NA	16	"ATP8B4,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,MYEF2,SECISBP2L,SHC4,SLC12A1,SLC27A2"
TCGA.AA.A00N.01A	15	48470236	48494260	3	0.0726	NEUTRAL	NA	2	"CTXN2,MYEF2"
TCGA.CK.4948.01B	15	48494260	48704736	35	-0.1975	NEUTRAL	NA	4	"CTXN2,DUT,FBN1,SLC12A1"
TCGA.AA.A02H.01A	15	48499900	48628164	27	-0.0313	NEUTRAL	NA	2	"DUT,SLC12A1"
TCGA.AZ.4684.01A	15	48499900	50474598	216	-0.1302	NEUTRAL	NA	14	"ATP8B4,CEP152,COPS2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,SECISBP2L,SHC4,SLC12A1,SLC27A2"
TCGA.AG.3891.01A	15	48499900	60297125	938	-0.006	NEUTRAL	NA	74	"ADAM10,ALDH1A2,AP4E1,AQP9,ARPP19,ATP8B4,BCL2L10,BNIP2,C15orf65,CCNB2,CCPG1,CEP152,CGNL1,COPS2,CYP19A1,DMXL2,DTWD1,DUT,DYX1C1,EID1,FAM214A,FAM227B,FAM63B,FAM81A,FBN1,FGF7,FOXB1,GABPB1,GALK2,GCNT3,GCOM1,GLDN,GNB5,GTF2A2,HDC,LDHAL6B,LEO1,LIPC,LYSMD2,MAPK6,MNS1,MYO1E,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RSL24D1,SCG3,SECISBP2L,SHC4,SLC12A1,SLC27A2,SLTM,SPPL2A,TCF12,TEX9,TMOD2,TMOD3,TNFAIP8L3,TRPM7,UNC13C,USP50,USP8,WDR72,ZNF280D"
TCGA.AG.A01W.01A	15	48569274	48625908	16	0.1205	NEUTRAL	NA	2	"DUT,SLC12A1"
TCGA.AA.A00N.01A	15	48577256	48624412	9	-0.1541	NEUTRAL	NA	2	"DUT,SLC12A1"
TCGA.AA.A02H.01A	15	48633424	49135584	90	0.3033	NEUTRAL	NA	4	"CEP152,DUT,FBN1,SHC4"
TCGA.AG.A01W.01A	15	48641138	48815564	42	-0.1855	NEUTRAL	NA	1	FBN1
TCGA.AG.3909.01A	15	48703145	48748794	23	0.0629	NEUTRAL	NA	1	FBN1
TCGA.AA.A00D.01A	15	48703145	50601851	191	-0.1133	NEUTRAL	NA	14	"ATP8B4,CEP152,COPS2,DTWD1,EID1,FAM227B,FBN1,FGF7,GABPB1,GALK2,HDC,SECISBP2L,SHC4,SLC27A2"
TCGA.AA.A00L.01A	15	48704736	50601851	192	0.3759	NEUTRAL	NA	14	"ATP8B4,CEP152,COPS2,DTWD1,EID1,FAM227B,FBN1,FGF7,GABPB1,GALK2,HDC,SECISBP2L,SHC4,SLC27A2"
TCGA.CK.4948.01B	15	48707681	48738855	18	0.1806	NEUTRAL	NA	1	FBN1
TCGA.CK.4948.01B	15	48740943	102462347	4026	-0.1684	NEUTRAL	NA	373	Too-Many
TCGA.AG.3909.01A	15	48752388	49309684	86	-0.3038	NEUTRAL	NA	5	"CEP152,EID1,FBN1,SECISBP2L,SHC4"
TCGA.CK.5914.01A	15	48775964	48791112	12	-0.1141	NEUTRAL	NA	1	FBN1
TCGA.AA.A02K.01A	15	48782000	48788249	6	0.1079	NEUTRAL	NA	1	FBN1
TCGA.AA.A02K.01A	15	48789426	77154707	2492	-0.3724	NEUTRAL	NA	222	Too-Many
TCGA.AG.A01W.01A	15	48816085	49596516	73	0.1391	NEUTRAL	NA	7	"CEP152,COPS2,EID1,FBN1,GALK2,SECISBP2L,SHC4"
TCGA.DM.A28F	15	48850484	102400036	17794	-0.0395	NEUTRAL	NA	372	Too-Many
TCGA.CK.5914.01A	15	49037040	49149847	25	0.1181	NEUTRAL	NA	2	"CEP152,SHC4"
TCGA.CM.5348	15	49137281	71785188	7646	-0.0538	NEUTRAL	NA	153	Too-Many
TCGA.AA.A02H.01A	15	49143319	49182878	9	-0.4214	NEUTRAL	NA	2	"EID1,SHC4"
TCGA.CK.5914.01A	15	49182878	50549570	107	0.0819	NEUTRAL	NA	10	"ATP8B4,COPS2,DTWD1,FAM227B,FGF7,GALK2,HDC,SECISBP2L,SHC4,SLC27A2"
TCGA.AA.A02H.01A	15	49217025	49288517	4	0.0177	NEUTRAL	NA	2	"SECISBP2L,SHC4"
TCGA.A6.5659	15	49334116	102400036	16272	-0.1636	NEUTRAL	NA	368	Too-Many
TCGA.AG.3909.01A	15	49421628	49627556	23	-0.3683	NEUTRAL	NA	3	"COPS2,FAM227B,GALK2"
TCGA.AA.A02H.01A	15	49431695	49437115	3	0.1129	NEUTRAL	NA	1	COPS2
TCGA.AA.A02H.01A	15	49493326	75694163	2093	0.0288	NEUTRAL	NA	203	Too-Many
TCGA.AG.A01W.01A	15	49626682	49761219	8	0.3421	NEUTRAL	NA	2	"FAM227B,FGF7"
TCGA.AG.A01W.01A	15	49761946	50355005	98	-0.1112	NEUTRAL	NA	4	"ATP8B4,DTWD1,FAM227B,FGF7"
TCGA.AA.A010.01A	15	49924319	50193262	11	-0.4029	NEUTRAL	NA	2	"ATP8B4,DTWD1"
TCGA.AG.3909.01A	15	49935522	50399098	28	-0.3066	NEUTRAL	NA	2	"ATP8B4,DTWD1"
TCGA.AG.3906.01A	15	50152354	51669573	161	0.0657	NEUTRAL	NA	12	"AP4E1,ATP8B4,CYP19A1,GABPB1,GLDN,HDC,SLC27A2,SPPL2A,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AA.3844	15	50300611	53257893	853	-0.0045	NEUTRAL	NA	26	"AP4E1,ARPP19,ATP8B4,BCL2L10,CYP19A1,DMXL2,FAM214A,GABPB1,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MYO5A,MYO5C,ONECUT1,SCG3,SLC27A2,SPPL2A,TMOD2,TMOD3,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AA.3811	15	50352560	52102255	450	0.0813	NEUTRAL	NA	16	"AP4E1,ATP8B4,CYP19A1,DMXL2,GABPB1,GLDN,HDC,LYSMD2,SCG3,SLC27A2,SPPL2A,TMOD2,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AG.A01W.01A	15	50356551	52706279	114	0.1864	NEUTRAL	NA	23	"AP4E1,ATP8B4,BCL2L10,CYP19A1,DMXL2,GABPB1,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MYO5A,MYO5C,SCG3,SLC27A2,SPPL2A,TMOD2,TMOD3,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AA.3941	15	50364539	50457857	37	0.2587	NEUTRAL	NA	1	ATP8B4
TCGA.AA.3850	15	50364539	53179008	781	0.23185	NEUTRAL	NA	26	"AP4E1,ARPP19,ATP8B4,BCL2L10,CYP19A1,DMXL2,FAM214A,GABPB1,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MYO5A,MYO5C,ONECUT1,SCG3,SLC27A2,SPPL2A,TMOD2,TMOD3,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AA.A010.01A	15	50399098	50497389	5	-0.4752	NEUTRAL	NA	2	"ATP8B4,SLC27A2"
TCGA.AA.3982	15	50418524	53240823	805	-0.1074	NEUTRAL	NA	25	"AP4E1,ARPP19,BCL2L10,CYP19A1,DMXL2,FAM214A,GABPB1,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MYO5A,MYO5C,ONECUT1,SCG3,SLC27A2,SPPL2A,TMOD2,TMOD3,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AA.3509.01A	15	50489650	50903282	72	-0.1285	NEUTRAL	NA	6	"GABPB1,HDC,SLC27A2,TRPM7,USP50,USP8"
TCGA.AG.3909.01A	15	50497389	50535308	9	-0.1207	NEUTRAL	NA	2	"HDC,SLC27A2"
TCGA.AG.3909.01A	15	50570780	50601851	8	-0.2682	NEUTRAL	NA	1	GABPB1
TCGA.CK.5914.01A	15	50570780	50836735	33	-0.0041	NEUTRAL	NA	3	"GABPB1,USP50,USP8"
TCGA.AA.A01Q.01A	15	50570780	64446538	764	0.1315	NEUTRAL	NA	79	"ADAM10,ALDH1A2,ANXA2,AP4E1,APH1B,AQP9,ARPP19,BCL2L10,BNIP2,C15orf65,C2CD4A,C2CD4B,CA12,CCNB2,CCPG1,CGNL1,CYP19A1,DAPK2,DMXL2,DYX1C1,FAM214A,FAM63B,FAM81A,FAM96A,FBXL22,FOXB1,GABPB1,GCNT3,GCOM1,GLDN,GNB5,GTF2A2,HERC1,ICE2,LACTB,LDHAL6B,LEO1,LIPC,LYSMD2,MAPK6,MNS1,MYO1E,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RAB8B,RFX7,RNF111,RORA,RPS27L,RSL24D1,SCG3,SLTM,SNX1,SNX22,SPPL2A,TCF12,TEX9,TLN2,TMOD2,TMOD3,TNFAIP8L3,TPM1,TRPM7,UNC13C,USP3,USP50,USP8,VPS13C,WDR72,ZNF280D"
TCGA.AG.3611.01A	15	50601851	51039645	31	-0.0875	NEUTRAL	NA	5	"GABPB1,SPPL2A,TRPM7,USP50,USP8"
TCGA.AA.A00D.01A	15	50731221	51285517	50	0.3292	NEUTRAL	NA	5	"AP4E1,SPPL2A,TRPM7,USP50,USP8"
TCGA.AG.3909.01A	15	50763802	51040838	67	-0.3413	NEUTRAL	NA	4	"SPPL2A,TRPM7,USP50,USP8"
TCGA.CK.5914.01A	15	50838600	50940867	32	-0.4779	NEUTRAL	NA	2	"TRPM7,USP50"
TCGA.CK.5914.01A	15	50949897	51217268	22	0.0232	NEUTRAL	NA	3	"AP4E1,SPPL2A,TRPM7"
TCGA.AA.A010.01A	15	50949897	51514476	45	-0.4315	NEUTRAL	NA	5	"AP4E1,CYP19A1,SPPL2A,TNFAIP8L3,TRPM7"
TCGA.AG.3611.01A	15	51040257	52200889	112	-0.3389	NEUTRAL	NA	10	"AP4E1,CYP19A1,DMXL2,GLDN,LYSMD2,SCG3,SPPL2A,TMOD2,TMOD3,TNFAIP8L3"
TCGA.AA.3509.01A	15	51216063	51768769	50	-0.0174	NEUTRAL	NA	5	"AP4E1,CYP19A1,DMXL2,GLDN,TNFAIP8L3"
TCGA.A6.3808.01A	15	51216063	59205671	538	0.3392	NEUTRAL	NA	45	"ADAM10,ALDH1A2,AP4E1,AQP9,ARPP19,BCL2L10,C15orf65,CCPG1,CGNL1,CYP19A1,DMXL2,DYX1C1,FAM214A,FAM63B,GCOM1,GLDN,GNB5,LEO1,LIPC,LYSMD2,MAPK6,MNS1,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RSL24D1,SCG3,SLTM,TCF12,TEX9,TMOD2,TMOD3,TNFAIP8L3,UNC13C,WDR72,ZNF280D"
TCGA.AG.3909.01A	15	51221159	52011553	85	-0.2436	NEUTRAL	NA	6	"AP4E1,CYP19A1,DMXL2,GLDN,SCG3,TNFAIP8L3"
TCGA.AA.A00D.01A	15	51289471	51980406	68	-0.0128	NEUTRAL	NA	6	"AP4E1,CYP19A1,DMXL2,GLDN,SCG3,TNFAIP8L3"
TCGA.AG.3906.01A	15	51675552	51973892	48	-0.2412	NEUTRAL	NA	3	"DMXL2,GLDN,SCG3"
TCGA.AA.3941	15	51685649	52153396	97	0.1949	NEUTRAL	NA	6	"DMXL2,GLDN,LYSMD2,SCG3,TMOD2,TMOD3"
TCGA.CK.5914.01A	15	51692349	51806616	30	-0.1975	NEUTRAL	NA	2	"DMXL2,GLDN"
TCGA.AZ.4684.01A	15	51758354	51984345	34	0.2698	NEUTRAL	NA	2	"DMXL2,SCG3"
TCGA.AA.A010.01A	15	51809233	52005474	23	0.1796	NEUTRAL	NA	2	"DMXL2,SCG3"
TCGA.AA.3509.01A	15	51860621	51984345	8	0.2719	NEUTRAL	NA	2	"DMXL2,SCG3"
TCGA.CK.5914.01A	15	51974644	52058587	13	-0.4327	NEUTRAL	NA	3	"LYSMD2,SCG3,TMOD2"
TCGA.AG.3906.01A	15	51974644	52563901	95	0.2043	NEUTRAL	NA	9	"BCL2L10,GNB5,LEO1,LYSMD2,MAPK6,MYO5C,SCG3,TMOD2,TMOD3"
TCGA.AA.3509.01A	15	51988035	52571657	95	-0.3223	NEUTRAL	NA	9	"BCL2L10,GNB5,LEO1,LYSMD2,MAPK6,MYO5C,SCG3,TMOD2,TMOD3"
TCGA.CK.5914.01A	15	52060427	52161395	10	-0.0802	NEUTRAL	NA	2	"TMOD2,TMOD3"
TCGA.AA.A010.01A	15	52069086	56216771	283	0.1386	NEUTRAL	NA	23	"ARPP19,BCL2L10,C15orf65,CCPG1,DYX1C1,FAM214A,GNB5,LEO1,MAPK6,MYO5A,MYO5C,NEDD4,ONECUT1,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RSL24D1,TMOD2,TMOD3,UNC13C,WDR72"
TCGA.AA.3811	15	52103818	53240823	372	0.0381	NEUTRAL	NA	11	"ARPP19,BCL2L10,FAM214A,GNB5,LEO1,MAPK6,MYO5A,MYO5C,ONECUT1,TMOD2,TMOD3"
TCGA.AG.3909.01A	15	52192301	55677766	212	-0.3563	NEUTRAL	NA	17	"ARPP19,BCL2L10,CCPG1,FAM214A,GNB5,LEO1,MAPK6,MYO5A,MYO5C,ONECUT1,PIGB,PIGBOS1,RAB27A,RSL24D1,TMOD3,UNC13C,WDR72"
TCGA.AA.A00N.01A	15	52230321	52356537	18	0.3016	NEUTRAL	NA	2	"LEO1,MAPK6"
TCGA.AG.3611.01A	15	52230321	52404395	20	-0.0645	NEUTRAL	NA	3	"BCL2L10,LEO1,MAPK6"
TCGA.CK.5914.01A	15	52230321	52529642	51	0.0238	NEUTRAL	NA	5	"BCL2L10,GNB5,LEO1,MAPK6,MYO5C"
TCGA.AA.A00D.01A	15	52230321	59910396	320	0.0075	NEUTRAL	NA	42	"ADAM10,ALDH1A2,AQP9,ARPP19,BCL2L10,C15orf65,CCNB2,CCPG1,CGNL1,DYX1C1,FAM214A,FAM63B,FAM81A,GCNT3,GCOM1,GNB5,LDHAL6B,LEO1,LIPC,MAPK6,MNS1,MYO1E,MYO5A,MYO5C,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RSL24D1,SLTM,TCF12,TEX9,UNC13C,WDR72,ZNF280D"
TCGA.AG.3611.01A	15	52414868	55742399	62	-0.3768	NEUTRAL	NA	15	"ARPP19,C15orf65,CCPG1,DYX1C1,FAM214A,GNB5,MYO5A,MYO5C,ONECUT1,PIGB,PIGBOS1,RAB27A,RSL24D1,UNC13C,WDR72"
TCGA.AA.A00N.01A	15	52425524	52553037	39	0.235	NEUTRAL	NA	2	"GNB5,MYO5C"
TCGA.AA.A00A.01A	15	52427768	52720578	12	0.0171	NEUTRAL	NA	3	"GNB5,MYO5A,MYO5C"
TCGA.AA.A00L.01A	15	52446109	53889227	23	0.1066	NEUTRAL	NA	7	"ARPP19,FAM214A,GNB5,MYO5A,MYO5C,ONECUT1,WDR72"
TCGA.A6.A56B	15	52541542	74537752	7386	0.0132	NEUTRAL	NA	152	Too-Many
TCGA.AA.3509.01A	15	52574937	54542422	84	0.1505	NEUTRAL	NA	7	"ARPP19,FAM214A,MYO5A,MYO5C,ONECUT1,UNC13C,WDR72"
TCGA.CK.5914.01A	15	52605845	55611402	120	0.2041	NEUTRAL	NA	10	"ARPP19,FAM214A,MYO5A,ONECUT1,PIGB,PIGBOS1,RAB27A,RSL24D1,UNC13C,WDR72"
TCGA.AG.3906.01A	15	52605845	60646294	442	-0.0157	NEUTRAL	NA	41	"ADAM10,ALDH1A2,ANXA2,AQP9,ARPP19,BNIP2,C15orf65,CCNB2,CCPG1,CGNL1,DYX1C1,FAM214A,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,LDHAL6B,LIPC,MNS1,MYO1E,MYO5A,MYZAP,NEDD4,ONECUT1,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RSL24D1,SLTM,TCF12,TEX9,UNC13C,WDR72,ZNF280D"
TCGA.AG.A00C.01A	15	52606264	52720578	37	-0.2814	NEUTRAL	NA	1	MYO5A
TCGA.AA.A00N.01A	15	52611280	52629944	7	0.1539	NEUTRAL	NA	1	MYO5A
TCGA.AZ.4684.01A	15	52688466	54542422	52	-0.1939	NEUTRAL	NA	6	"ARPP19,FAM214A,MYO5A,ONECUT1,UNC13C,WDR72"
TCGA.AA.A00N.01A	15	52700195	52725322	6	0.3107	NEUTRAL	NA	1	MYO5A
TCGA.AG.A00C.01A	15	52725322	52885733	7	0.245	NEUTRAL	NA	3	"ARPP19,FAM214A,MYO5A"
TCGA.AG.A00C.01A	15	52892287	55681496	94	-0.1908	NEUTRAL	NA	9	"CCPG1,FAM214A,ONECUT1,PIGB,PIGBOS1,RAB27A,RSL24D1,UNC13C,WDR72"
TCGA.AA.A00N.01A	15	52893225	53815368	11	0.1577	NEUTRAL	NA	3	"FAM214A,ONECUT1,WDR72"
TCGA.AA.3941	15	52895014	53003815	35	-0.0225	NEUTRAL	NA	1	FAM214A
TCGA.AA.3941	15	53181940	53215146	20	-0.236	NEUTRAL	NA	0	None
TCGA.AA.3850	15	53181940	55394954	980	-0.49185	NEUTRAL	NA	2	"UNC13C,WDR72"
TCGA.AA.3811	15	53241226	55394954	943	-0.3556	NEUTRAL	NA	2	"UNC13C,WDR72"
TCGA.AA.3941	15	53252239	54506144	581	-0.2193	NEUTRAL	NA	2	"UNC13C,WDR72"
TCGA.AG.A01W.01A	15	53261671	54177526	94	-0.1166	NEUTRAL	NA	1	WDR72
TCGA.AA.3844	15	53272551	55394954	930	-0.4362	NEUTRAL	NA	2	"UNC13C,WDR72"
TCGA.AA.A00A.01A	15	54025142	54792991	5	-0.1953	NEUTRAL	NA	2	"UNC13C,WDR72"
TCGA.AA.3941	15	54510156	54575215	38	-0.0555	NEUTRAL	NA	1	UNC13C
TCGA.AA.3989	15	54523021	54580785	38	-0.0251	NEUTRAL	NA	1	UNC13C
TCGA.AG.A01W.01A	15	54535848	59935740	262	0.0287	NEUTRAL	NA	33	"ADAM10,ALDH1A2,AQP9,C15orf65,CCNB2,CCPG1,CGNL1,DYX1C1,FAM63B,FAM81A,GCNT3,GCOM1,GTF2A2,LDHAL6B,LIPC,MNS1,MYO1E,MYZAP,NEDD4,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RSL24D1,SLTM,TCF12,TEX9,UNC13C,ZNF280D"
TCGA.AA.3989	15	54590361	54705901	35	-0.2313	NEUTRAL	NA	1	UNC13C
TCGA.AA.3977	15	54590361	55394954	301	-0.1486	NEUTRAL	NA	1	UNC13C
TCGA.AA.3864	15	54590361	87189319	9760	0.1031	NEUTRAL	NA	259	Too-Many
TCGA.AA.3941	15	54637574	54896954	76	-0.219	NEUTRAL	NA	1	UNC13C
TCGA.AA.3989	15	54714482	87938182	10117	0.0759	NEUTRAL	NA	259	Too-Many
TCGA.AA.A00N.01A	15	54914473	55677766	34	0.2084	NEUTRAL	NA	6	"CCPG1,PIGB,PIGBOS1,RAB27A,RSL24D1,UNC13C"
TCGA.AA.3941	15	54956058	55351558	175	-0.1467	NEUTRAL	NA	0	None
TCGA.CM.5341	15	55021070	102400036	15790	-0.4906	NEUTRAL	NA	334	Too-Many
TCGA.CM.4752	15	55136774	93562522	12082	-0.2744	NEUTRAL	NA	307	Too-Many
TCGA.CM.6679	15	55266444	102400036	15640	-0.19305	NEUTRAL	NA	334	Too-Many
TCGA.AA.3850	15	55400871	56484287	270	0.21885	NEUTRAL	NA	11	"C15orf65,CCPG1,DYX1C1,NEDD4,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RFX7,RSL24D1"
TCGA.AA.3982	15	55400871	79867841	7404	-0.0765	NEUTRAL	NA	211	Too-Many
TCGA.AA.3844	15	55400871	86663549	9216	0.0216	NEUTRAL	NA	257	Too-Many
TCGA.AA.3811	15	55400871	86778024	9265	0.0842	NEUTRAL	NA	258	Too-Many
TCGA.AA.3977	15	55400871	94361808	12413	0.104	NEUTRAL	NA	308	Too-Many
TCGA.AA.3509.01A	15	55483110	56390252	90	-0.1807	NEUTRAL	NA	11	"C15orf65,CCPG1,DYX1C1,NEDD4,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RFX7,RSL24D1"
TCGA.CK.5914.01A	15	55612442	55933269	42	-0.5102	NEUTRAL	NA	6	"C15orf65,CCPG1,DYX1C1,PIGB,PRTG,PYGO1"
TCGA.AA.3980.01A	15	55677766	55710291	3	0.2896	NEUTRAL	NA	3	"C15orf65,CCPG1,DYX1C1"
TCGA.AA.3980.01A	15	55722821	77317546	1930	-0.4742	NEUTRAL	NA	180	Too-Many
TCGA.AG.A00C.01A	15	55783274	56161748	43	-0.0962	NEUTRAL	NA	4	"DYX1C1,NEDD4,PRTG,PYGO1"
TCGA.AG.3909.01A	15	55790357	57976566	146	-0.2853	NEUTRAL	NA	12	"CGNL1,DYX1C1,GCOM1,MNS1,MYZAP,NEDD4,PRTG,PYGO1,RFX7,TCF12,TEX9,ZNF280D"
TCGA.AG.3611.01A	15	55790357	101112072	2530	-0.2348	NEUTRAL	NA	317	Too-Many
TCGA.CK.5914.01A	15	55964596	56436543	45	-0.0563	NEUTRAL	NA	3	"NEDD4,PRTG,RFX7"
TCGA.AG.A00C.01A	15	56164557	56394312	13	0.2664	NEUTRAL	NA	2	"NEDD4,RFX7"
TCGA.AA.A00A.01A	15	56385556	56665584	4	-0.2472	NEUTRAL	NA	2	"RFX7,TEX9"
TCGA.DM.A28M.01A	15	56395703	56723522	18	-0.1031	NEUTRAL	NA	3	"MNS1,RFX7,TEX9"
TCGA.AG.A00C.01A	15	56395703	57931599	89	-0.1612	NEUTRAL	NA	8	"CGNL1,GCOM1,MNS1,MYZAP,RFX7,TCF12,TEX9,ZNF280D"
TCGA.AA.A010.01A	15	56434939	60297125	245	0.3185	NEUTRAL	NA	24	"ADAM10,ALDH1A2,AQP9,BNIP2,CCNB2,CGNL1,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,LDHAL6B,LIPC,MNS1,MYO1E,MYZAP,POLR2M,RFX7,RNF111,SLTM,TCF12,TEX9,ZNF280D"
TCGA.CK.5914.01A	15	56471386	58476142	112	0.3519	NEUTRAL	NA	11	"ALDH1A2,AQP9,CGNL1,GCOM1,MNS1,MYZAP,POLR2M,RFX7,TCF12,TEX9,ZNF280D"
TCGA.AA.3850	15	56484362	56968120	102	-0.26555	NEUTRAL	NA	4	"MNS1,RFX7,TEX9,ZNF280D"
TCGA.DM.A28M.01A	15	56748555	62146606	268	-0.5057	NEUTRAL	NA	26	"ADAM10,ALDH1A2,ANXA2,AQP9,BNIP2,CCNB2,CGNL1,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,ICE2,LDHAL6B,LIPC,MNS1,MYO1E,MYZAP,POLR2M,RNF111,RORA,SLTM,TCF12,VPS13C,ZNF280D"
TCGA.AA.3532	15	56770816	90074485	10348	-0.2388	NEUTRAL	NA	259	Too-Many
TCGA.AY.4071	15	56967023	102400036	15210	-0.4099	NEUTRAL	NA	321	Too-Many
TCGA.AZ.4684.01A	15	56969727	62147022	256	-0.4136	NEUTRAL	NA	25	"ADAM10,ALDH1A2,ANXA2,AQP9,BNIP2,CCNB2,CGNL1,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,ICE2,LDHAL6B,LIPC,MYO1E,MYZAP,POLR2M,RNF111,RORA,SLTM,TCF12,VPS13C,ZNF280D"
TCGA.AA.3509.01A	15	56981191	62147022	253	0.0122	NEUTRAL	NA	25	"ADAM10,ALDH1A2,ANXA2,AQP9,BNIP2,CCNB2,CGNL1,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,ICE2,LDHAL6B,LIPC,MYO1E,MYZAP,POLR2M,RNF111,RORA,SLTM,TCF12,VPS13C,ZNF280D"
TCGA.AA.3850	15	57002274	57778323	225	0.26145	NEUTRAL	NA	3	"CGNL1,TCF12,ZNF280D"
TCGA.AA.3852	15	57402689	59513563	941	-0.3284	NEUTRAL	NA	15	"ADAM10,ALDH1A2,AQP9,CCNB2,CGNL1,FAM63B,GCOM1,LDHAL6B,LIPC,MYO1E,MYZAP,POLR2M,RNF111,SLTM,TCF12"
TCGA.AG.3893	15	57488766	102400036	15055	-0.338	NEUTRAL	NA	320	Too-Many
TCGA.G4.6299	15	57619701	102400036	15149	0.2964	NEUTRAL	NA	319	Too-Many
TCGA.D5.5538	15	57654705	102400036	15115	-0.0061	NEUTRAL	NA	319	Too-Many
TCGA.AA.3850	15	57787147	58089175	191	0.25415	NEUTRAL	NA	4	"CGNL1,GCOM1,MYZAP,POLR2M"
TCGA.DC.4745	15	57879309	102400036	14968	-0.1671	NEUTRAL	NA	318	Too-Many
TCGA.AA.3930.01A	15	57931599	62176289	216	0.0693	NEUTRAL	NA	22	"ADAM10,ALDH1A2,ANXA2,AQP9,BNIP2,CCNB2,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,ICE2,LDHAL6B,LIPC,MYO1E,MYZAP,POLR2M,RNF111,RORA,SLTM,VPS13C"
TCGA.AG.A00C.01A	15	57953588	58006717	6	0.3647	NEUTRAL	NA	3	"GCOM1,MYZAP,POLR2M"
TCGA.AA.3850	15	58090522	58630239	284	-0.06465	NEUTRAL	NA	2	"ALDH1A2,AQP9"
TCGA.AG.3909.01A	15	58247333	58853046	25	-0.1081	NEUTRAL	NA	3	"ALDH1A2,AQP9,LIPC"
TCGA.AG.A00C.01A	15	58247333	59063543	43	-0.2409	NEUTRAL	NA	5	"ADAM10,ALDH1A2,AQP9,FAM63B,LIPC"
TCGA.G4.6322	15	58577162	73671516	4978	-0.013	NEUTRAL	NA	111	Too-Many
TCGA.AA.3850	15	58634767	60142339	550	0.33355	NEUTRAL	NA	12	"ADAM10,BNIP2,CCNB2,FAM63B,FAM81A,GCNT3,GTF2A2,LDHAL6B,LIPC,MYO1E,RNF111,SLTM"
TCGA.CK.5914.01A	15	58724176	59146631	34	-0.2877	NEUTRAL	NA	3	"ADAM10,FAM63B,LIPC"
TCGA.AA.A00N.01A	15	59009739	59225556	30	-0.0892	NEUTRAL	NA	3	"ADAM10,FAM63B,SLTM"
TCGA.F5.6864	15	59046162	60856695	629	0.0132	NEUTRAL	NA	14	"ANXA2,BNIP2,CCNB2,FAM63B,FAM81A,FOXB1,GCNT3,GTF2A2,ICE2,LDHAL6B,MYO1E,RNF111,RORA,SLTM"
TCGA.AG.A00C.01A	15	59080032	59224517	26	0.1582	NEUTRAL	NA	2	"FAM63B,SLTM"
TCGA.CK.5914.01A	15	59172161	59487612	52	0.1768	NEUTRAL	NA	4	"CCNB2,MYO1E,RNF111,SLTM"
TCGA.A6.3808.01A	15	59209077	60907041	119	-0.3811	NEUTRAL	NA	13	"ANXA2,BNIP2,CCNB2,FAM81A,FOXB1,GCNT3,GTF2A2,ICE2,LDHAL6B,MYO1E,RNF111,RORA,SLTM"
TCGA.AG.A00C.01A	15	59322985	59931250	59	-0.1556	NEUTRAL	NA	7	"CCNB2,FAM81A,GCNT3,GTF2A2,LDHAL6B,MYO1E,RNF111"
TCGA.AG.3909.01A	15	59429521	59470553	10	0.1248	NEUTRAL	NA	1	MYO1E
TCGA.AG.3909.01A	15	59480280	59934293	30	-0.45	NEUTRAL	NA	5	"FAM81A,GCNT3,GTF2A2,LDHAL6B,MYO1E"
TCGA.CK.5914.01A	15	59510043	59784419	13	0.3463	NEUTRAL	NA	2	"FAM81A,MYO1E"
TCGA.AA.3852	15	59515766	102400036	14267	-0.0239	NEUTRAL	NA	306	Too-Many
TCGA.AA.3875	15	59667686	60019663	127	0.343	NEUTRAL	NA	4	"BNIP2,FAM81A,GCNT3,GTF2A2"
TCGA.CK.5914.01A	15	59799365	59934293	9	-0.0844	NEUTRAL	NA	3	"FAM81A,GCNT3,GTF2A2"
TCGA.AG.A00C.01A	15	59934293	60728288	29	0.2411	NEUTRAL	NA	5	"ANXA2,BNIP2,FOXB1,GTF2A2,ICE2"
TCGA.AA.A00D.01A	15	59970058	63349135	187	0.0095	NEUTRAL	NA	10	"ANXA2,BNIP2,C2CD4A,C2CD4B,FOXB1,ICE2,RORA,TLN2,TPM1,VPS13C"
TCGA.AA.A00N.01A	15	59981282	60644532	7	-0.1196	NEUTRAL	NA	3	"ANXA2,BNIP2,FOXB1"
TCGA.CK.5914.01A	15	59981282	60644532	7	0.1411	NEUTRAL	NA	3	"ANXA2,BNIP2,FOXB1"
TCGA.AA.3875	15	60023323	84764240	7139	0.0129	NEUTRAL	NA	212	Too-Many
TCGA.AA.3678	15	60034316	102400036	14064	-0.0085	NEUTRAL	NA	301	Too-Many
TCGA.AG.A01W.01A	15	60044209	61676636	149	0.1157	NEUTRAL	NA	4	"ANXA2,FOXB1,ICE2,RORA"
TCGA.F5.6811.01A	15	60093352	60147104	11	0.135	NEUTRAL	NA	0	None
TCGA.AA.3850	15	60142483	62380594	1054	-0.03905	NEUTRAL	NA	6	"ANXA2,C2CD4A,FOXB1,ICE2,RORA,VPS13C"
TCGA.F5.6811.01A	15	60147783	100279870	2978	-0.3225	NEUTRAL	NA	287	Too-Many
TCGA.AG.3727	15	60309441	102400036	13947	0.0212	NEUTRAL	NA	300	Too-Many
TCGA.AA.3544	15	60444990	102400036	13898	0.0064	NEUTRAL	NA	300	Too-Many
TCGA.AG.3891.01A	15	60639759	60644532	5	-0.4715	NEUTRAL	NA	1	ANXA2
TCGA.AG.3909.01A	15	60639759	60644532	5	-0.3732	NEUTRAL	NA	1	ANXA2
TCGA.AG.3891.01A	15	60646294	62176289	52	0.0282	NEUTRAL	NA	4	"ANXA2,ICE2,RORA,VPS13C"
TCGA.AG.A011.01A	15	60648056	60715781	7	0.1566	NEUTRAL	NA	2	"ANXA2,ICE2"
TCGA.AG.3906.01A	15	60678170	62176289	46	-0.0181	NEUTRAL	NA	4	"ANXA2,ICE2,RORA,VPS13C"
TCGA.AA.A00N.01A	15	60689991	60748804	11	0.1787	NEUTRAL	NA	2	"ANXA2,ICE2"
TCGA.CK.5914.01A	15	60689991	60907041	27	-0.0605	NEUTRAL	NA	3	"ANXA2,ICE2,RORA"
TCGA.AG.4009.01A	15	60715781	62949963	120	-0.0819	NEUTRAL	NA	6	"C2CD4A,C2CD4B,ICE2,RORA,TLN2,VPS13C"
TCGA.AG.A011.01A	15	60720640	102462347	2809	-0.2838	NEUTRAL	NA	300	Too-Many
TCGA.AF.A56N	15	60731501	102400036	13748	-0.0084	NEUTRAL	NA	299	Too-Many
TCGA.AG.A00C.01A	15	60734608	63132640	164	-0.2144	NEUTRAL	NA	6	"C2CD4A,C2CD4B,ICE2,RORA,TLN2,VPS13C"
TCGA.AA.A00N.01A	15	60789623	60797666	6	0.0326	NEUTRAL	NA	1	RORA
TCGA.AG.3909.01A	15	60789623	62336342	97	-0.4349	NEUTRAL	NA	2	"RORA,VPS13C"
TCGA.AA.A010.01A	15	60884535	62202383	26	-0.3861	NEUTRAL	NA	2	"RORA,VPS13C"
TCGA.DY.A0XA	15	60923428	87285346	7602	-0.012	NEUTRAL	NA	222	Too-Many
TCGA.AF.3913	15	61269244	64448459	1340	-0.0285	NEUTRAL	NA	19	"APH1B,C2CD4A,C2CD4B,CA12,DAPK2,FAM96A,FBXL22,HERC1,LACTB,PPIB,RAB8B,RORA,RPS27L,SNX1,SNX22,TLN2,TPM1,USP3,VPS13C"
TCGA.A6.6780	15	61286953	102400036	13463	0.0181	NEUTRAL	NA	298	Too-Many
TCGA.F5.6864	15	61407065	61463030	34	0.0542	NEUTRAL	NA	1	RORA
TCGA.A6.2675	15	61462980	62346055	387	-0.3269	NEUTRAL	NA	2	"RORA,VPS13C"
TCGA.A6.6782	15	61700657	102400036	13195	-0.2429	NEUTRAL	NA	297	Too-Many
TCGA.D5.6531	15	61700657	102400036	13234	0.1645	NEUTRAL	NA	297	Too-Many
TCGA.AG.A01W.01A	15	61702024	61843320	70	0.1876	NEUTRAL	NA	0	None
TCGA.AA.3667	15	61741729	102400036	13230	-0.0266	NEUTRAL	NA	297	Too-Many
TCGA.AG.A01W.01A	15	61853932	62191789	19	-0.3143	NEUTRAL	NA	1	VPS13C
TCGA.AG.3592	15	61879563	102400036	13149	-0.021	NEUTRAL	NA	297	Too-Many
TCGA.CM.6675	15	61896477	94496298	9949	0.0372	NEUTRAL	NA	271	Too-Many
TCGA.F5.6864	15	61922204	66958811	1458	-0.0078	NEUTRAL	NA	53	"ANKDD1A,APH1B,C2CD4A,C2CD4B,CA12,CILP,CLPX,CSNK1G1,DAPK2,DENND4A,DIS3L,DPP8,FAM96A,FBXL22,HACD3,HERC1,IGDCC3,IGDCC4,KBTBD13,KIAA0101,LACTB,LCTL,MAP2K1,MEGF11,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,PPIB,RAB11A,RAB8B,RASL12,RBPMS2,RPL4,RPS27L,SLC24A1,SLC51B,SNAPC5,SNX1,SNX22,SPG21,TIPIN,TLN2,TPM1,TRIP4,UBAP1L,USP3,VPS13C,VWA9,ZNF609,ZWILCH"
TCGA.DM.A28M.01A	15	62147022	62327117	78	0.0049	NEUTRAL	NA	1	VPS13C
TCGA.AA.A00N.01A	15	62170756	62176289	5	-0.1008	NEUTRAL	NA	1	VPS13C
TCGA.CK.5914.01A	15	62182332	62203992	5	-0.1764	NEUTRAL	NA	1	VPS13C
TCGA.AG.3891.01A	15	62182332	62255985	36	-0.3423	NEUTRAL	NA	1	VPS13C
TCGA.AG.A01W.01A	15	62197329	62216767	13	-0.0045	NEUTRAL	NA	1	VPS13C
TCGA.AA.A010.01A	15	62203992	62210288	5	0.2402	NEUTRAL	NA	1	VPS13C
TCGA.AG.3906.01A	15	62214100	62242495	15	-0.3233	NEUTRAL	NA	1	VPS13C
TCGA.AA.3930.01A	15	62217615	91504800	2608	0.1155	NEUTRAL	NA	262	Too-Many
TCGA.AA.A010.01A	15	62223252	62320491	45	0.1823	NEUTRAL	NA	1	VPS13C
TCGA.CK.5914.01A	15	62226376	62237897	5	0.1513	NEUTRAL	NA	1	VPS13C
TCGA.AA.3939.01A	15	62226376	62362656	53	-0.5086	NEUTRAL	NA	2	"C2CD4A,VPS13C"
TCGA.AG.A01W.01A	15	62235928	62251124	5	0.1114	NEUTRAL	NA	1	VPS13C
TCGA.AG.3906.01A	15	62243117	64983583	305	-0.0321	NEUTRAL	NA	23	"APH1B,C2CD4A,C2CD4B,CA12,CSNK1G1,DAPK2,FAM96A,FBXL22,HERC1,KIAA0101,LACTB,OAZ2,PPIB,RAB8B,RPS27L,SNX1,SNX22,TLN2,TPM1,TRIP4,USP3,VPS13C,ZNF609"
TCGA.AG.3891.01A	15	62256916	65222978	325	0.0386	NEUTRAL	NA	27	"ANKDD1A,APH1B,C2CD4A,C2CD4B,CA12,CSNK1G1,DAPK2,FAM96A,FBXL22,HERC1,KIAA0101,LACTB,OAZ2,PIF1,PLEKHO2,PPIB,RAB8B,RBPMS2,RPS27L,SNX1,SNX22,TLN2,TPM1,TRIP4,USP3,VPS13C,ZNF609"
TCGA.AG.A01W.01A	15	62259553	62901482	57	-0.1756	NEUTRAL	NA	3	"C2CD4A,C2CD4B,VPS13C"
TCGA.CK.5914.01A	15	62264785	62359812	28	0.3326	NEUTRAL	NA	2	"C2CD4A,VPS13C"
TCGA.AA.3509.01A	15	62273489	62302619	9	-0.4229	NEUTRAL	NA	1	VPS13C
TCGA.AA.A01I.01A	15	62273489	63351715	79	-0.2518	NEUTRAL	NA	5	"C2CD4A,C2CD4B,TLN2,TPM1,VPS13C"
TCGA.AA.A00N.01A	15	62315563	62999236	30	-0.4646	NEUTRAL	NA	4	"C2CD4A,C2CD4B,TLN2,VPS13C"
TCGA.A6.3808.01A	15	62327117	67358492	604	-0.1207	NEUTRAL	NA	55	"ANKDD1A,APH1B,C2CD4A,C2CD4B,CA12,CILP,CLPX,CSNK1G1,DAPK2,DENND4A,DIS3L,DPP8,FAM96A,FBXL22,HACD3,HERC1,IGDCC3,IGDCC4,KBTBD13,KIAA0101,LACTB,LCTL,MAP2K1,MEGF11,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,PPIB,RAB11A,RAB8B,RASL12,RBPMS2,RPL4,RPS27L,SLC24A1,SLC51B,SMAD3,SMAD6,SNAPC5,SNX1,SNX22,SPG21,TIPIN,TLN2,TPM1,TRIP4,UBAP1L,USP3,VPS13C,VWA9,ZNF609,ZWILCH"
TCGA.AA.3509.01A	15	62333448	66416190	523	-0.0492	NEUTRAL	NA	46	"ANKDD1A,APH1B,C2CD4A,C2CD4B,CA12,CILP,CLPX,CSNK1G1,DAPK2,DENND4A,DPP8,FAM96A,FBXL22,HACD3,HERC1,IGDCC3,IGDCC4,KBTBD13,KIAA0101,LACTB,MEGF11,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,PPIB,RAB11A,RAB8B,RASL12,RBPMS2,RPS27L,SLC24A1,SLC51B,SNX1,SNX22,SPG21,TLN2,TPM1,TRIP4,UBAP1L,USP3,VPS13C,VWA9,ZNF609"
TCGA.AZ.4684.01A	15	62333448	66416190	523	-0.4964	NEUTRAL	NA	46	"ANKDD1A,APH1B,C2CD4A,C2CD4B,CA12,CILP,CLPX,CSNK1G1,DAPK2,DENND4A,DPP8,FAM96A,FBXL22,HACD3,HERC1,IGDCC3,IGDCC4,KBTBD13,KIAA0101,LACTB,MEGF11,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,PPIB,RAB11A,RAB8B,RASL12,RBPMS2,RPS27L,SLC24A1,SLC51B,SNX1,SNX22,SPG21,TLN2,TPM1,TRIP4,UBAP1L,USP3,VPS13C,VWA9,ZNF609"
TCGA.AG.3909.01A	15	62352427	62967366	10	-0.0696	NEUTRAL	NA	4	"C2CD4A,C2CD4B,TLN2,VPS13C"
TCGA.D5.6538	15	62354569	65672129	984	0.3245	NEUTRAL	NA	37	"ANKDD1A,APH1B,C2CD4A,C2CD4B,CA12,CILP,CLPX,CSNK1G1,DAPK2,FAM96A,FBXL22,HERC1,IGDCC3,KBTBD13,KIAA0101,LACTB,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,PPIB,RAB8B,RASL12,RBPMS2,RPS27L,SLC51B,SNX1,SNX22,SPG21,TLN2,TPM1,TRIP4,UBAP1L,USP3,ZNF609"
TCGA.AA.3850	15	62382732	86818770	6615	0.25525	NEUTRAL	NA	219	Too-Many
TCGA.DM.A28A	15	62454836	102400036	12888	0.2227	NEUTRAL	NA	295	Too-Many
TCGA.CK.5914.01A	15	62456069	62978793	10	0.0035	NEUTRAL	NA	2	"C2CD4B,TLN2"
TCGA.AA.3939.01A	15	62456069	102462347	2934	-0.219	NEUTRAL	NA	296	Too-Many
TCGA.AA.A010.01A	15	62939479	62999236	17	0.3513	NEUTRAL	NA	1	TLN2
TCGA.AG.A016.01A	15	62965958	90144479	2126	-0.0866	NEUTRAL	NA	233	Too-Many
TCGA.AG.4009.01A	15	62994179	63017148	10	-0.2012	NEUTRAL	NA	1	TLN2
TCGA.CK.5914.01A	15	63009726	63363230	49	0.1111	NEUTRAL	NA	2	"TLN2,TPM1"
TCGA.AG.4009.01A	15	63019247	63363230	43	0.0977	NEUTRAL	NA	2	"TLN2,TPM1"
TCGA.AG.A01W.01A	15	63042966	63408279	62	-0.1919	NEUTRAL	NA	2	"TLN2,TPM1"
TCGA.AF.2689	15	63043876	63105654	45	0.3674	NEUTRAL	NA	1	TLN2
TCGA.AA.3518	15	63105654	102400036	12583	0.0152	NEUTRAL	NA	294	Too-Many
TCGA.AF.2689	15	63111364	81080924	4892	0.0034	NEUTRAL	NA	180	Too-Many
TCGA.A6.5656	15	63320533	102400036	12448	5.00E-04	NEUTRAL	NA	293	Too-Many
TCGA.AG.A00C.01A	15	63336189	63619292	36	0.2871	NEUTRAL	NA	6	"APH1B,CA12,LACTB,RAB8B,RPS27L,TPM1"
TCGA.AA.A010.01A	15	63349135	63449501	20	-0.2802	NEUTRAL	NA	3	"LACTB,RPS27L,TPM1"
TCGA.AF.3914.01A	15	63354354	64429704	157	-0.0541	NEUTRAL	NA	12	"APH1B,CA12,DAPK2,FAM96A,FBXL22,HERC1,LACTB,RAB8B,RPS27L,SNX1,TPM1,USP3"
TCGA.AA.A01I.01A	15	63354354	102462347	2619	-0.1917	NEUTRAL	NA	294	Too-Many
TCGA.AG.A01W.01A	15	63408755	63490405	29	0.1573	NEUTRAL	NA	3	"LACTB,RAB8B,RPS27L"
TCGA.CK.5914.01A	15	63449501	63916309	48	-0.1356	NEUTRAL	NA	7	"APH1B,CA12,FBXL22,HERC1,RAB8B,RPS27L,USP3"
TCGA.AG.A01W.01A	15	63508919	63643578	36	-0.4078	NEUTRAL	NA	3	"APH1B,CA12,RAB8B"
TCGA.AA.A00D.01A	15	63569774	65257612	149	0.0182	NEUTRAL	NA	20	"ANKDD1A,APH1B,CA12,CSNK1G1,DAPK2,FAM96A,FBXL22,HERC1,KIAA0101,OAZ2,PIF1,PLEKHO2,PPIB,RBPMS2,SNX1,SNX22,SPG21,TRIP4,USP3,ZNF609"
TCGA.AG.4009.01A	15	63597765	63866208	20	0.0156	NEUTRAL	NA	3	"APH1B,CA12,USP3"
TCGA.AG.A00C.01A	15	63620214	63855064	16	-0.2221	NEUTRAL	NA	2	"CA12,USP3"
TCGA.AA.A00N.01A	15	63630991	63862615	17	0.2812	NEUTRAL	NA	2	"CA12,USP3"
TCGA.AG.3909.01A	15	63630991	64275701	105	-0.2118	NEUTRAL	NA	5	"CA12,DAPK2,FBXL22,HERC1,USP3"
TCGA.AG.A01W.01A	15	63649443	65260587	165	-0.0914	NEUTRAL	NA	19	"ANKDD1A,CA12,CSNK1G1,DAPK2,FAM96A,FBXL22,HERC1,KIAA0101,OAZ2,PIF1,PLEKHO2,PPIB,RBPMS2,SNX1,SNX22,SPG21,TRIP4,USP3,ZNF609"
TCGA.AA.A01Z	15	63660171	65936469	433	0.0254	NEUTRAL	NA	34	"ANKDD1A,CA12,CILP,CLPX,CSNK1G1,DAPK2,DPP8,FAM96A,FBXL22,HACD3,HERC1,IGDCC3,IGDCC4,KBTBD13,KIAA0101,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,PPIB,RASL12,RBPMS2,SLC24A1,SLC51B,SNX1,SNX22,SPG21,TRIP4,UBAP1L,USP3,VWA9,ZNF609"
TCGA.AA.A010.01A	15	63796885	63862615	9	-0.2199	NEUTRAL	NA	1	USP3
TCGA.AG.A00C.01A	15	63862615	63893475	7	0.305	NEUTRAL	NA	2	"FBXL22,USP3"
TCGA.AA.A00A.01A	15	63889559	64056255	8	-0.3401	NEUTRAL	NA	2	"FBXL22,HERC1"
TCGA.AA.A00L.01A	15	63889559	64200660	21	0.0093	NEUTRAL	NA	3	"DAPK2,FBXL22,HERC1"
TCGA.AG.4009.01A	15	63893475	64048585	70	-0.1309	NEUTRAL	NA	2	"FBXL22,HERC1"
TCGA.AG.A00C.01A	15	63901228	65236795	180	-0.0669	NEUTRAL	NA	15	"ANKDD1A,CSNK1G1,DAPK2,FAM96A,HERC1,KIAA0101,OAZ2,PIF1,PLEKHO2,PPIB,RBPMS2,SNX1,SNX22,TRIP4,ZNF609"
TCGA.CK.5914.01A	15	63918136	64263573	75	0.3584	NEUTRAL	NA	2	"DAPK2,HERC1"
TCGA.AA.A010.01A	15	63937140	64995141	136	0.3554	NEUTRAL	NA	11	"CSNK1G1,DAPK2,FAM96A,HERC1,KIAA0101,OAZ2,PPIB,SNX1,SNX22,TRIP4,ZNF609"
TCGA.G4.6303	15	64017322	66832190	575	-0.085	NEUTRAL	NA	40	"ANKDD1A,CILP,CLPX,CSNK1G1,DAPK2,DENND4A,DIS3L,DPP8,FAM96A,HACD3,HERC1,IGDCC3,IGDCC4,KBTBD13,KIAA0101,MAP2K1,MEGF11,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,PPIB,RAB11A,RASL12,RBPMS2,RPL4,SLC24A1,SLC51B,SNAPC5,SNX1,SNX22,SPG21,TIPIN,TRIP4,UBAP1L,VWA9,ZNF609,ZWILCH"
TCGA.AG.4009.01A	15	64050327	64275701	13	0.3037	NEUTRAL	NA	2	"DAPK2,HERC1"
TCGA.CK.5913	15	64268364	88499184	6666	-0.0044	NEUTRAL	NA	209	Too-Many
TCGA.CK.5914.01A	15	64275701	65214078	99	-0.2369	NEUTRAL	NA	14	"ANKDD1A,CSNK1G1,DAPK2,FAM96A,KIAA0101,OAZ2,PIF1,PLEKHO2,PPIB,RBPMS2,SNX1,SNX22,TRIP4,ZNF609"
TCGA.AG.4009.01A	15	64332318	64429704	20	-0.1393	NEUTRAL	NA	3	"DAPK2,FAM96A,SNX1"
TCGA.AA.A00L.01A	15	64429704	64464060	12	-0.1662	NEUTRAL	NA	4	"CSNK1G1,PPIB,SNX1,SNX22"
TCGA.AG.3731	15	64433895	102400036	12167	0.0148	NEUTRAL	NA	282	Too-Many
TCGA.AA.3666	15	64439531	101558688	11823	-0.451	NEUTRAL	NA	273	Too-Many
TCGA.AA.A00Q.01A	15	64445392	64452251	7	-0.3667	NEUTRAL	NA	2	"PPIB,SNX22"
TCGA.AA.A00A.01A	15	64445392	64454193	8	-0.0173	NEUTRAL	NA	2	"PPIB,SNX22"
TCGA.AF.3914.01A	15	64448885	64995141	45	-0.1271	NEUTRAL	NA	7	"CSNK1G1,KIAA0101,OAZ2,PPIB,SNX22,TRIP4,ZNF609"
TCGA.AA.A00Q.01A	15	64454193	66587278	208	0.3526	NEUTRAL	NA	30	"ANKDD1A,CILP,CLPX,CSNK1G1,DENND4A,DIS3L,DPP8,HACD3,IGDCC3,IGDCC4,KBTBD13,KIAA0101,MEGF11,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,PPIB,RAB11A,RASL12,RBPMS2,SLC24A1,SLC51B,SPG21,TRIP4,UBAP1L,VWA9,ZNF609"
TCGA.AA.A01Q.01A	15	64455013	65040588	39	0.3034	NEUTRAL	NA	7	"CSNK1G1,KIAA0101,OAZ2,PPIB,RBPMS2,TRIP4,ZNF609"
TCGA.AG.4009.01A	15	64464060	65043698	45	-0.0233	NEUTRAL	NA	6	"CSNK1G1,KIAA0101,OAZ2,RBPMS2,TRIP4,ZNF609"
TCGA.AG.3909.01A	15	64464060	65054536	48	-0.2077	NEUTRAL	NA	6	"CSNK1G1,KIAA0101,OAZ2,RBPMS2,TRIP4,ZNF609"
TCGA.AA.A00N.01A	15	64495229	65043698	46	0.3375	NEUTRAL	NA	6	"CSNK1G1,KIAA0101,OAZ2,RBPMS2,TRIP4,ZNF609"
TCGA.AG.A026	15	64627302	101722524	11851	-0.0045	NEUTRAL	NA	272	Too-Many
TCGA.AF.3913	15	64736286	102400036	12085	-0.0156	NEUTRAL	NA	277	Too-Many
TCGA.A6.2675	15	64795462	66977803	473	-0.4037	NEUTRAL	NA	32	"ANKDD1A,CILP,CLPX,DENND4A,DIS3L,DPP8,HACD3,IGDCC3,IGDCC4,KBTBD13,LCTL,MAP2K1,MEGF11,MTFMT,OAZ2,PARP16,PDCD7,PIF1,PLEKHO2,RAB11A,RASL12,RBPMS2,RPL4,SLC24A1,SLC51B,SNAPC5,SPG21,TIPIN,UBAP1L,VWA9,ZNF609,ZWILCH"
TCGA.EI.6508	15	64936785	102400036	12109	-0.0062	NEUTRAL	NA	276	Too-Many
TCGA.AA.A00A.01A	15	65043698	65255912	25	0.2838	NEUTRAL	NA	5	"ANKDD1A,PIF1,PLEKHO2,RBPMS2,SPG21"
TCGA.AA.A00L.01A	15	65108455	65114428	7	0.0534	NEUTRAL	NA	1	PIF1
TCGA.AA.A010.01A	15	65115936	65266903	25	0.1084	NEUTRAL	NA	4	"ANKDD1A,PIF1,PLEKHO2,SPG21"
TCGA.AG.3909.01A	15	65115936	65275775	26	-0.2321	NEUTRAL	NA	4	"ANKDD1A,PIF1,PLEKHO2,SPG21"
TCGA.AA.A01Q.01A	15	65115936	65343798	28	0.2314	NEUTRAL	NA	6	"ANKDD1A,MTFMT,PIF1,PLEKHO2,SLC51B,SPG21"
TCGA.AG.4009.01A	15	65115936	65347210	36	-0.2573	NEUTRAL	NA	7	"ANKDD1A,MTFMT,PIF1,PLEKHO2,RASL12,SLC51B,SPG21"
TCGA.AG.3906.01A	15	65140772	65226284	12	0.0871	NEUTRAL	NA	2	"ANKDD1A,PLEKHO2"
TCGA.AF.3914.01A	15	65147080	65628111	85	-0.0845	NEUTRAL	NA	13	"ANKDD1A,CILP,CLPX,IGDCC3,KBTBD13,MTFMT,PARP16,PDCD7,PLEKHO2,RASL12,SLC51B,SPG21,UBAP1L"
TCGA.AA.A00L.01A	15	65214078	65255912	12	0.1235	NEUTRAL	NA	2	"ANKDD1A,SPG21"
TCGA.AG.3891.01A	15	65223638	65255912	8	-0.3055	NEUTRAL	NA	2	"ANKDD1A,SPG21"
TCGA.AG.3906.01A	15	65255912	65357487	22	0.188	NEUTRAL	NA	4	"MTFMT,RASL12,SLC51B,SPG21"
TCGA.AG.A00C.01A	15	65255912	65472331	41	0.3059	NEUTRAL	NA	8	"CLPX,KBTBD13,MTFMT,PDCD7,RASL12,SLC51B,SPG21,UBAP1L"
TCGA.CK.5914.01A	15	65255912	66171953	182	-0.1415	NEUTRAL	NA	18	"CILP,CLPX,DENND4A,DPP8,HACD3,IGDCC3,IGDCC4,KBTBD13,MTFMT,PARP16,PDCD7,RAB11A,RASL12,SLC24A1,SLC51B,SPG21,UBAP1L,VWA9"
TCGA.AG.3891.01A	15	65257612	75761060	998	0.1134	NEUTRAL	NA	108	Too-Many
TCGA.AA.A00D.01A	15	65261555	65472331	31	0.3647	NEUTRAL	NA	8	"CLPX,KBTBD13,MTFMT,PDCD7,RASL12,SLC51B,SPG21,UBAP1L"
TCGA.AG.A01W.01A	15	65282156	66859408	129	-0.0704	NEUTRAL	NA	26	"CILP,CLPX,DENND4A,DIS3L,DPP8,HACD3,IGDCC3,IGDCC4,KBTBD13,LCTL,MAP2K1,MEGF11,MTFMT,PARP16,PDCD7,RAB11A,RASL12,RPL4,SLC24A1,SLC51B,SNAPC5,SPG21,TIPIN,UBAP1L,VWA9,ZWILCH"
TCGA.AA.A00N.01A	15	65321715	65472331	33	-0.3998	NEUTRAL	NA	7	"CLPX,KBTBD13,MTFMT,PDCD7,RASL12,SLC51B,UBAP1L"
TCGA.AA.A01Q.01A	15	65345257	65421350	10	-0.3807	NEUTRAL	NA	5	"KBTBD13,PDCD7,RASL12,SLC51B,UBAP1L"
TCGA.AA.A01Q.01A	15	65425268	65628111	41	0.1705	NEUTRAL	NA	5	"CILP,CLPX,IGDCC3,PARP16,PDCD7"
TCGA.AG.4009.01A	15	65425268	65628111	38	0.13	NEUTRAL	NA	5	"CILP,CLPX,IGDCC3,PARP16,PDCD7"
TCGA.AG.3906.01A	15	65443120	65804671	74	0.2303	NEUTRAL	NA	6	"CILP,CLPX,DPP8,IGDCC3,IGDCC4,PARP16"
TCGA.AA.A00A.01A	15	65471234	65703311	45	0.1771	NEUTRAL	NA	5	"CILP,CLPX,IGDCC3,IGDCC4,PARP16"
TCGA.AA.A00D.01A	15	65477351	69695873	300	0.0267	NEUTRAL	NA	37	"AAGAB,ANP32A,C15orf61,CALML4,CILP,CLN6,CLPX,CORO2B,DENND4A,DIS3L,DPP8,FEM1B,GLCE,HACD3,IGDCC3,IGDCC4,IQCH,ITGA11,LCTL,MAP2K1,MAP2K5,MEGF11,NOX5,PAQR5,PARP16,PIAS1,RAB11A,RPL4,SKOR1,SLC24A1,SMAD3,SMAD6,SNAPC5,SPESP1,TIPIN,VWA9,ZWILCH"
TCGA.AG.A00C.01A	15	65489038	65676357	27	-0.0755	NEUTRAL	NA	4	"CILP,IGDCC3,IGDCC4,PARP16"
TCGA.AA.3697	15	65489687	102400036	12018	-0.4636	NEUTRAL	NA	262	Too-Many
TCGA.AG.3909.01A	15	65496589	65578543	11	0.1817	NEUTRAL	NA	2	"CILP,PARP16"
TCGA.AA.3872	15	65539863	71349044	1774	-0.067	NEUTRAL	NA	42	"AAGAB,ANP32A,C15orf61,CALML4,CLN6,CORO2B,DENND4A,DIS3L,DPP8,FEM1B,GLCE,HACD3,IGDCC3,IGDCC4,IQCH,ITGA11,KIF23,LARP6,LCTL,LRRC49,MAP2K1,MAP2K5,MEGF11,NOX5,PAQR5,PARP16,PIAS1,RAB11A,RPL4,RPLP1,SKOR1,SLC24A1,SMAD3,SMAD6,SNAPC5,SPESP1,THAP10,TIPIN,TLE3,UACA,VWA9,ZWILCH"
TCGA.AA.A010.01A	15	65551695	65627017	15	0.0143	NEUTRAL	NA	2	"IGDCC3,PARP16"
TCGA.AA.A00L.01A	15	65667387	65703311	20	0.0124	NEUTRAL	NA	2	"IGDCC3,IGDCC4"
TCGA.AA.A00N.01A	15	65689132	65746554	9	-0.1191	NEUTRAL	NA	2	"DPP8,IGDCC4"
TCGA.AG.3909.01A	15	65693097	65792917	20	-0.2755	NEUTRAL	NA	2	"DPP8,IGDCC4"
TCGA.AF.3914.01A	15	65694649	68118337	245	0.0078	NEUTRAL	NA	22	"AAGAB,C15orf61,DENND4A,DIS3L,DPP8,HACD3,IGDCC4,IQCH,LCTL,MAP2K1,MAP2K5,MEGF11,RAB11A,RPL4,SKOR1,SLC24A1,SMAD3,SMAD6,SNAPC5,TIPIN,VWA9,ZWILCH"
TCGA.D5.6538	15	65723581	66791257	257	0.2849	NEUTRAL	NA	11	"DENND4A,DIS3L,DPP8,HACD3,MAP2K1,MEGF11,RAB11A,SLC24A1,SNAPC5,TIPIN,VWA9"
TCGA.AA.A01Q.01A	15	65739175	66777311	89	0.1995	NEUTRAL	NA	10	"DENND4A,DIS3L,DPP8,HACD3,MAP2K1,MEGF11,RAB11A,SLC24A1,TIPIN,VWA9"
TCGA.AG.A00C.01A	15	65739175	69681984	341	-0.0719	NEUTRAL	NA	32	"AAGAB,ANP32A,C15orf61,CALML4,CLN6,CORO2B,DENND4A,DIS3L,DPP8,FEM1B,GLCE,HACD3,IQCH,ITGA11,LCTL,MAP2K1,MAP2K5,MEGF11,NOX5,PAQR5,PIAS1,RAB11A,RPL4,SKOR1,SLC24A1,SMAD3,SMAD6,SNAPC5,SPESP1,TIPIN,VWA9,ZWILCH"
TCGA.AG.4009.01A	15	65739175	72462155	495	0.0196	NEUTRAL	NA	45	"AAGAB,ANP32A,C15orf61,CALML4,CLN6,CORO2B,CT62,DENND4A,DIS3L,DPP8,FEM1B,GLCE,GRAMD2,HACD3,IQCH,ITGA11,KIF23,LARP6,LCTL,LRRC49,MAP2K1,MAP2K5,MEGF11,MYO9A,NOX5,NR2E3,PAQR5,PIAS1,RAB11A,RPL4,RPLP1,SENP8,SKOR1,SLC24A1,SMAD3,SMAD6,SNAPC5,SPESP1,THAP10,THSD4,TIPIN,TLE3,UACA,VWA9,ZWILCH"
TCGA.AA.A00N.01A	15	65748513	65782490	11	0.312	NEUTRAL	NA	1	DPP8
TCGA.AG.3906.01A	15	65807911	72462155	479	-0.014	NEUTRAL	NA	45	"AAGAB,ANP32A,C15orf61,CALML4,CLN6,CORO2B,CT62,DENND4A,DIS3L,DPP8,FEM1B,GLCE,GRAMD2,HACD3,IQCH,ITGA11,KIF23,LARP6,LCTL,LRRC49,MAP2K1,MAP2K5,MEGF11,MYO9A,NOX5,NR2E3,PAQR5,PIAS1,RAB11A,RPL4,RPLP1,SENP8,SKOR1,SLC24A1,SMAD3,SMAD6,SNAPC5,SPESP1,THAP10,THSD4,TIPIN,TLE3,UACA,VWA9,ZWILCH"
TCGA.AA.A00N.01A	15	65822925	65883884	15	0.1973	NEUTRAL	NA	2	"HACD3,VWA9"
TCGA.AG.3909.01A	15	65843936	65874226	12	-0.2855	NEUTRAL	NA	2	"HACD3,VWA9"
TCGA.AG.3909.01A	15	65916977	66777311	88	-0.1975	NEUTRAL	NA	7	"DENND4A,DIS3L,MAP2K1,MEGF11,RAB11A,SLC24A1,TIPIN"
TCGA.AA.A00A.01A	15	65930394	66161843	4	-0.2478	NEUTRAL	NA	3	"DENND4A,RAB11A,SLC24A1"
TCGA.AG.3732	15	66253116	102400036	11869	-0.0025	NEUTRAL	NA	252	Too-Many
TCGA.AA.3509.01A	15	66420592	66832388	62	-0.4484	NEUTRAL	NA	7	"DIS3L,MAP2K1,MEGF11,RPL4,SNAPC5,TIPIN,ZWILCH"
TCGA.AA.A00N.01A	15	66587278	67555406	100	0.1034	NEUTRAL	NA	11	"AAGAB,DIS3L,IQCH,LCTL,MAP2K1,RPL4,SMAD3,SMAD6,SNAPC5,TIPIN,ZWILCH"
TCGA.CK.5914.01A	15	66633440	68582514	166	-0.0953	NEUTRAL	NA	17	"AAGAB,C15orf61,CALML4,CLN6,FEM1B,IQCH,LCTL,MAP2K1,MAP2K5,PIAS1,RPL4,SKOR1,SMAD3,SMAD6,SNAPC5,TIPIN,ZWILCH"
TCGA.SS.A7HO	15	66727596	102400036	11735	0.0261	NEUTRAL	NA	249	Too-Many
TCGA.AA.A01Q.01A	15	66779526	66794903	13	-0.3486	NEUTRAL	NA	3	"MAP2K1,RPL4,SNAPC5"
TCGA.AA.A010.01A	15	66815963	66843959	14	0.1227	NEUTRAL	NA	2	"LCTL,ZWILCH"
TCGA.AA.3509.01A	15	66838874	71272395	274	0.0467	NEUTRAL	NA	27	"AAGAB,ANP32A,C15orf61,CALML4,CLN6,CORO2B,FEM1B,GLCE,IQCH,ITGA11,KIF23,LARP6,LCTL,LRRC49,MAP2K5,NOX5,PAQR5,PIAS1,RPLP1,SKOR1,SMAD3,SMAD6,SPESP1,THAP10,TLE3,UACA,ZWILCH"
TCGA.AZ.4684.01A	15	66838874	71272395	274	-0.4073	NEUTRAL	NA	27	"AAGAB,ANP32A,C15orf61,CALML4,CLN6,CORO2B,FEM1B,GLCE,IQCH,ITGA11,KIF23,LARP6,LCTL,LRRC49,MAP2K5,NOX5,PAQR5,PIAS1,RPLP1,SKOR1,SMAD3,SMAD6,SPESP1,THAP10,TLE3,UACA,ZWILCH"
TCGA.G4.6303	15	66845165	84321047	4691	-0.4353	NEUTRAL	NA	155	Too-Many
TCGA.AG.3909.01A	15	66856191	67459064	9	-0.1067	NEUTRAL	NA	3	"LCTL,SMAD3,SMAD6"
TCGA.G4.6626	15	66921962	78506244	2947	-0.4124	NEUTRAL	NA	105	Too-Many
TCGA.AA.A00A.01A	15	67003945	67482724	11	0.2181	NEUTRAL	NA	2	"SMAD3,SMAD6"
TCGA.AA.A01Q.01A	15	67003945	67482724	11	-0.3822	NEUTRAL	NA	2	"SMAD3,SMAD6"
TCGA.DM.A288	15	67224700	67438585	139	-0.4017	NEUTRAL	NA	1	SMAD3
TCGA.D5.6923	15	67341809	97947626	9632	-0.0182	NEUTRAL	NA	220	Too-Many
TCGA.EI.6513	15	67383286	77608956	2477	0.0252	NEUTRAL	NA	97	"AAGAB,ADPGK,ANP32A,ARID3B,ARIH1,BBS4,C15orf27,C15orf39,C15orf59,C15orf61,CALML4,CCDC33,CD276,CELF6,CLK3,CLN6,COMMD4,CORO2B,COX5A,CPLX3,CSK,CSPG4,CT62,CYP11A1,CYP1A1,CYP1A2,EDC3,ETFA,FAM219B,FBXO22,FEM1B,GLCE,GOLGA6A,GOLGA6B,GOLGA6C,GOLGA6D,GRAMD2,HCN4,HEXA,IMP3,IQCH,ISL2,ISLR,ISLR2,ITGA11,KIF23,LARP6,LMAN1L,LOXL1,LRRC49,MAN2C1,MAP2K5,MPI,MYO9A,NEIL1,NEO1,NOX5,NPTN,NR2E3,NRG4,ODF3L1,PAQR5,PARP6,PEAK1,PIAS1,PKM,PML,PPCDC,PSTPIP1,PTPN9,RCN2,REC114,RPLP1,RPP25,SCAMP2,SCAMP5,SCAPER,SEMA7A,SENP8,SIN3A,SKOR1,SMAD3,SNUPN,SNX33,SPESP1,STOML1,STRA6,TBC1D21,THAP10,THSD4,TLE3,TMEM202,TSPAN3,UACA,UBE2Q2,UBL7,ULK3"
TCGA.DM.A288	15	67441763	91874282	6974	0.3741	NEUTRAL	NA	211	Too-Many
TCGA.NH.A50U	15	67458638	102400036	11386	-0.4522	NEUTRAL	NA	243	Too-Many
TCGA.AA.A01Z	15	67494822	69370052	511	0.0158	NEUTRAL	NA	14	"AAGAB,ANP32A,C15orf61,CALML4,CLN6,CORO2B,FEM1B,IQCH,ITGA11,MAP2K5,NOX5,PIAS1,SKOR1,SPESP1"
TCGA.AM.5820	15	67524949	68072274	111	-0.1582	NEUTRAL	NA	4	"AAGAB,C15orf61,IQCH,MAP2K5"
TCGA.A6.5662	15	67534850	102400036	11333	0.0467	NEUTRAL	NA	242	Too-Many
TCGA.AG.3909.01A	15	67546832	67786574	22	-0.2029	NEUTRAL	NA	2	"AAGAB,IQCH"
TCGA.AA.A01Q.01A	15	67547203	68119447	46	0.1841	NEUTRAL	NA	5	"AAGAB,C15orf61,IQCH,MAP2K5,SKOR1"
TCGA.AA.A010.01A	15	67629263	67786574	17	0.0644	NEUTRAL	NA	1	IQCH
TCGA.QG.A5Z1	15	67736022	102400036	11209	0.0473	NEUTRAL	NA	241	Too-Many
TCGA.AA.A00N.01A	15	67782272	67813586	4	-0.441	NEUTRAL	NA	2	"C15orf61,IQCH"
TCGA.AA.A010.01A	15	67855568	68121461	25	-0.0185	NEUTRAL	NA	2	"MAP2K5,SKOR1"
TCGA.AG.3909.01A	15	67878150	68118337	18	-0.3157	NEUTRAL	NA	2	"MAP2K5,SKOR1"
TCGA.DC.6683	15	68036851	86123987	4602	0.0162	NEUTRAL	NA	161	Too-Many
TCGA.F5.6864	15	68124150	102400036	11225	0.0891	NEUTRAL	NA	238	Too-Many
TCGA.AG.3909.01A	15	68125465	68501935	21	-0.394	NEUTRAL	NA	4	"CALML4,CLN6,PIAS1,SKOR1"
TCGA.AA.A01Q.01A	15	68125465	73594899	302	0.1391	NEUTRAL	NA	35	"ADPGK,ANP32A,ARIH1,BBS4,CALML4,CELF6,CLN6,CORO2B,CT62,FEM1B,GLCE,GOLGA6B,GRAMD2,HEXA,ITGA11,KIF23,LARP6,LRRC49,MYO9A,NEO1,NOX5,NR2E3,PAQR5,PARP6,PIAS1,PKM,RPLP1,SENP8,SKOR1,SPESP1,THAP10,THSD4,TLE3,TMEM202,UACA"
TCGA.AA.A00N.01A	15	68126029	68504006	23	0.3372	NEUTRAL	NA	4	"CALML4,CLN6,PIAS1,SKOR1"
TCGA.AA.A010.01A	15	68126029	68582514	28	0.0321	NEUTRAL	NA	5	"CALML4,CLN6,FEM1B,PIAS1,SKOR1"
TCGA.AM.5820	15	68148861	74164030	1740	0.0801	NEUTRAL	NA	39	"ADPGK,ANP32A,ARIH1,BBS4,C15orf59,CALML4,CD276,CELF6,CLN6,CORO2B,CT62,FEM1B,GLCE,GOLGA6B,GRAMD2,HCN4,HEXA,ITGA11,KIF23,LARP6,LRRC49,MYO9A,NEO1,NOX5,NPTN,NR2E3,PAQR5,PARP6,PIAS1,PKM,REC114,RPLP1,SENP8,SPESP1,THAP10,THSD4,TLE3,TMEM202,UACA"
TCGA.AF.3914.01A	15	68378627	72432914	249	0.05	NEUTRAL	NA	23	"ANP32A,CALML4,CLN6,CORO2B,CT62,FEM1B,GLCE,ITGA11,KIF23,LARP6,LRRC49,MYO9A,NOX5,NR2E3,PAQR5,PIAS1,RPLP1,SENP8,SPESP1,THAP10,THSD4,TLE3,UACA"
TCGA.A6.2675	15	68480886	102400036	11099	-0.3374	NEUTRAL	NA	236	Too-Many
TCGA.AG.3909.01A	15	68595335	69076686	43	0.2278	NEUTRAL	NA	3	"ANP32A,CORO2B,ITGA11"
TCGA.AA.A00L.01A	15	69072360	69340114	21	-0.0789	NEUTRAL	NA	3	"ANP32A,NOX5,SPESP1"
TCGA.AA.A00N.01A	15	69079715	69681984	29	-0.1056	NEUTRAL	NA	5	"ANP32A,GLCE,NOX5,PAQR5,SPESP1"
TCGA.CK.5914.01A	15	69079715	69681984	28	0.1405	NEUTRAL	NA	5	"ANP32A,GLCE,NOX5,PAQR5,SPESP1"
TCGA.AA.A00A.01A	15	69222923	69706711	28	0.2949	NEUTRAL	NA	5	"GLCE,KIF23,NOX5,PAQR5,SPESP1"
TCGA.AA.3861.01A	15	69237901	83455214	1146	-0.1489	NEUTRAL	NA	131	Too-Many
TCGA.AG.3909.01A	15	69318830	69681984	22	-0.3045	NEUTRAL	NA	3	"GLCE,NOX5,PAQR5"
TCGA.AA.A01Z	15	69634518	75306862	1500	0.0347	NEUTRAL	NA	56	"ADPGK,ARID3B,ARIH1,BBS4,C15orf59,CCDC33,CD276,CELF6,CLK3,COX5A,CPLX3,CSK,CT62,CYP11A1,CYP1A1,CYP1A2,EDC3,FAM219B,GOLGA6A,GOLGA6B,GRAMD2,HCN4,HEXA,ISLR,ISLR2,KIF23,LARP6,LMAN1L,LOXL1,LRRC49,MPI,MYO9A,NEO1,NPTN,NR2E3,PAQR5,PARP6,PKM,PML,REC114,RPLP1,RPP25,SCAMP2,SCAMP5,SEMA7A,SENP8,STOML1,STRA6,TBC1D21,THAP10,THSD4,TLE3,TMEM202,UACA,UBL7,ULK3"
TCGA.AA.A010.01A	15	69652355	70952426	54	0.2462	NEUTRAL	NA	5	"KIF23,PAQR5,RPLP1,TLE3,UACA"
TCGA.AG.A01W.01A	15	70296753	70335823	12	-0.1067	NEUTRAL	NA	0	None
TCGA.AA.A00D.01A	15	70344664	74005185	218	0.0061	NEUTRAL	NA	25	"ADPGK,ARIH1,BBS4,CD276,CELF6,CT62,GOLGA6B,GRAMD2,HCN4,HEXA,LARP6,LRRC49,MYO9A,NEO1,NPTN,NR2E3,PARP6,PKM,REC114,SENP8,THAP10,THSD4,TLE3,TMEM202,UACA"
TCGA.AG.A00C.01A	15	70346770	71124372	32	-0.1186	NEUTRAL	NA	3	"LARP6,TLE3,UACA"
TCGA.AG.3909.01A	15	70348589	71143922	34	-0.379	NEUTRAL	NA	3	"LARP6,TLE3,UACA"
TCGA.AA.A01T	15	70508017	102400036	10431	-0.2274	NEUTRAL	NA	223	Too-Many
TCGA.F4.6461	15	70542019	72023633	495	-0.0248	NEUTRAL	NA	6	"CT62,LARP6,LRRC49,THAP10,THSD4,UACA"
TCGA.G4.6310	15	70832660	71045467	43	0.2676	NEUTRAL	NA	1	UACA
TCGA.AA.A010.01A	15	70956949	71341751	40	-0.2841	NEUTRAL	NA	4	"LARP6,LRRC49,THAP10,UACA"
TCGA.G4.6310	15	71058519	102400036	10276	-0.1594	NEUTRAL	NA	222	Too-Many
TCGA.AG.A00C.01A	15	71128597	71203803	10	0.3015	NEUTRAL	NA	3	"LARP6,LRRC49,THAP10"
TCGA.AG.3909.01A	15	71203803	72104323	33	-0.3364	NEUTRAL	NA	4	"CT62,LRRC49,NR2E3,THSD4"
TCGA.AG.A00C.01A	15	71211361	72494778	91	-0.1168	NEUTRAL	NA	8	"CT62,GRAMD2,LRRC49,MYO9A,NR2E3,PKM,SENP8,THSD4"
TCGA.CK.5914.01A	15	71229054	72549639	117	0.1532	NEUTRAL	NA	9	"CT62,GRAMD2,LRRC49,MYO9A,NR2E3,PARP6,PKM,SENP8,THSD4"
TCGA.AY.6196	15	71309592	71641907	85	0.2464	NEUTRAL	NA	3	"CT62,LRRC49,THSD4"
TCGA.AA.3509.01A	15	71341751	72208663	54	0.0543	NEUTRAL	NA	5	"CT62,LRRC49,MYO9A,NR2E3,THSD4"
TCGA.AZ.4684.01A	15	71341751	102462347	2122	-0.4699	NEUTRAL	NA	221	Too-Many
TCGA.AA.A010.01A	15	71447140	72050194	15	0.0696	NEUTRAL	NA	1	THSD4
TCGA.AY.6196	15	71645662	102400036	10052	0.1504	NEUTRAL	NA	218	Too-Many
TCGA.EF.5830	15	71721925	102400036	10080	-0.4828	NEUTRAL	NA	218	Too-Many
TCGA.AA.3560	15	71828347	72082623	143	0.1924	NEUTRAL	NA	1	THSD4
TCGA.AG.A01W.01A	15	71960742	71968380	8	-0.1683	NEUTRAL	NA	1	THSD4
TCGA.CA.6715	15	71962285	102400036	9923	0.0031	NEUTRAL	NA	218	Too-Many
TCGA.CM.5348	15	71998915	76505905	836	0.2292	NEUTRAL	NA	65	"ADPGK,ARID3B,ARIH1,BBS4,C15orf27,C15orf39,C15orf59,CCDC33,CD276,CELF6,CLK3,COMMD4,COX5A,CPLX3,CSK,CSPG4,CYP11A1,CYP1A1,CYP1A2,EDC3,FAM219B,FBXO22,GOLGA6A,GOLGA6B,GOLGA6C,GOLGA6D,GRAMD2,HCN4,HEXA,IMP3,ISLR,ISLR2,LMAN1L,LOXL1,MAN2C1,MPI,MYO9A,NEIL1,NEO1,NPTN,NR2E3,NRG4,ODF3L1,PARP6,PKM,PML,PPCDC,PTPN9,REC114,RPP25,SCAMP2,SCAMP5,SEMA7A,SENP8,SIN3A,SNUPN,SNX33,STOML1,STRA6,TBC1D21,THSD4,TMEM202,UBE2Q2,UBL7,ULK3"
TCGA.F4.6461	15	72031762	74664850	563	-0.0655	NEUTRAL	NA	30	"ADPGK,ARIH1,BBS4,C15orf59,CCDC33,CD276,CELF6,CYP11A1,GOLGA6A,GOLGA6B,GRAMD2,HCN4,HEXA,ISLR,ISLR2,LOXL1,MYO9A,NEO1,NPTN,NR2E3,PARP6,PKM,PML,REC114,SENP8,STOML1,STRA6,TBC1D21,THSD4,TMEM202"
TCGA.AA.A00N.01A	15	72057351	72106313	10	-0.4898	NEUTRAL	NA	2	"NR2E3,THSD4"
TCGA.AA.A010.01A	15	72106313	72197211	26	-0.0784	NEUTRAL	NA	2	"MYO9A,NR2E3"
TCGA.AG.A01W.01A	15	72111926	72427294	59	0.0464	NEUTRAL	NA	2	"MYO9A,SENP8"
TCGA.AG.3909.01A	15	72120188	72499022	60	-0.3506	NEUTRAL	NA	4	"GRAMD2,MYO9A,PKM,SENP8"
TCGA.AA.3509.01A	15	72270465	75909727	472	-0.0332	NEUTRAL	NA	55	"ADPGK,ARID3B,ARIH1,BBS4,C15orf39,C15orf59,CCDC33,CD276,CELF6,CLK3,COMMD4,COX5A,CPLX3,CSK,CYP11A1,CYP1A1,CYP1A2,EDC3,FAM219B,GOLGA6A,GOLGA6B,GOLGA6C,GOLGA6D,GRAMD2,HCN4,HEXA,ISLR,ISLR2,LMAN1L,LOXL1,MAN2C1,MPI,MYO9A,NEIL1,NEO1,NPTN,PARP6,PKM,PML,PPCDC,PTPN9,REC114,RPP25,SCAMP2,SCAMP5,SEMA7A,SENP8,SIN3A,SNUPN,STOML1,STRA6,TBC1D21,TMEM202,UBL7,ULK3"
TCGA.AA.A00N.01A	15	72431928	72460045	10	0.1054	NEUTRAL	NA	2	"GRAMD2,SENP8"
TCGA.AA.A010.01A	15	72431928	72462155	13	-0.2794	NEUTRAL	NA	2	"GRAMD2,SENP8"
TCGA.AG.A01W.01A	15	72446673	72498149	13	-0.3921	NEUTRAL	NA	2	"GRAMD2,PKM"
TCGA.AF.3914.01A	15	72455560	74473081	208	-0.1216	NEUTRAL	NA	24	"ADPGK,ARIH1,BBS4,C15orf59,CD276,CELF6,GOLGA6A,GOLGA6B,GRAMD2,HCN4,HEXA,ISLR,ISLR2,LOXL1,NEO1,NPTN,PARP6,PKM,PML,REC114,STOML1,STRA6,TBC1D21,TMEM202"
TCGA.AG.A00C.01A	15	72495336	72597014	34	0.3319	NEUTRAL	NA	3	"CELF6,PARP6,PKM"
TCGA.AG.A01W.01A	15	72525434	72535895	9	-0.0317	NEUTRAL	NA	1	PARP6
TCGA.CK.5914.01A	15	72550329	72837124	40	-0.434	NEUTRAL	NA	5	"ARIH1,CELF6,HEXA,PARP6,TMEM202"
TCGA.AG.3906.01A	15	72579588	74836311	222	0.0879	NEUTRAL	NA	26	"ADPGK,ARID3B,ARIH1,BBS4,C15orf59,CCDC33,CD276,CELF6,CYP11A1,GOLGA6A,GOLGA6B,HCN4,HEXA,ISLR,ISLR2,LOXL1,NEO1,NPTN,PML,REC114,SEMA7A,STOML1,STRA6,TBC1D21,TMEM202,UBL7"
TCGA.AA.A010.01A	15	72581153	73996489	120	0.163	NEUTRAL	NA	12	"ADPGK,ARIH1,BBS4,CD276,CELF6,GOLGA6B,HCN4,HEXA,NEO1,NPTN,REC114,TMEM202"
TCGA.AA.A00N.01A	15	72581432	72668014	19	0.3273	NEUTRAL	NA	2	"CELF6,HEXA"
TCGA.AG.3909.01A	15	72597014	74000641	114	-0.3366	NEUTRAL	NA	12	"ADPGK,ARIH1,BBS4,CD276,CELF6,GOLGA6B,HCN4,HEXA,NEO1,NPTN,REC114,TMEM202"
TCGA.AG.4009.01A	15	72608147	74425065	154	-0.15	NEUTRAL	NA	19	"ADPGK,ARIH1,BBS4,C15orf59,CD276,CELF6,GOLGA6A,GOLGA6B,HCN4,HEXA,ISLR2,LOXL1,NEO1,NPTN,PML,REC114,STOML1,TBC1D21,TMEM202"
TCGA.AG.A00C.01A	15	72611940	74967253	242	-0.1227	NEUTRAL	NA	28	"ADPGK,ARID3B,ARIH1,BBS4,C15orf59,CCDC33,CD276,CELF6,CLK3,CYP11A1,EDC3,GOLGA6A,GOLGA6B,HCN4,HEXA,ISLR,ISLR2,LOXL1,NEO1,NPTN,PML,REC114,SEMA7A,STOML1,STRA6,TBC1D21,TMEM202,UBL7"
TCGA.CK.5914.01A	15	72847569	74558997	160	0.0338	NEUTRAL	NA	19	"ADPGK,ARIH1,BBS4,C15orf59,CCDC33,CD276,GOLGA6A,GOLGA6B,HCN4,ISLR,ISLR2,LOXL1,NEO1,NPTN,PML,REC114,STOML1,STRA6,TBC1D21"
TCGA.AA.3681	15	73010783	77875267	892	-0.4886	NEUTRAL	NA	61	"ADPGK,ARID3B,BBS4,C15orf27,C15orf39,C15orf59,CCDC33,CD276,CLK3,COMMD4,COX5A,CPLX3,CSK,CSPG4,CYP11A1,CYP1A1,CYP1A2,EDC3,ETFA,FAM219B,FBXO22,GOLGA6A,GOLGA6C,GOLGA6D,HCN4,HMG20A,IMP3,ISL2,ISLR,ISLR2,LMAN1L,LOXL1,MAN2C1,MPI,NEIL1,NEO1,NPTN,NRG4,ODF3L1,PEAK1,PML,PPCDC,PSTPIP1,PTPN9,RCN2,REC114,RPP25,SCAMP2,SCAMP5,SCAPER,SEMA7A,SIN3A,SNUPN,SNX33,STOML1,STRA6,TBC1D21,TSPAN3,UBE2Q2,UBL7,ULK3"
TCGA.AG.A01W.01A	15	73035338	73127956	11	-0.2196	NEUTRAL	NA	1	ADPGK
TCGA.AG.A01W.01A	15	73337944	73419045	12	-0.4291	NEUTRAL	NA	1	NEO1
TCGA.A6.6649	15	73348185	102400036	9684	0.1975	NEUTRAL	NA	204	Too-Many
TCGA.AG.A01W.01A	15	73447861	74419623	110	0.1988	NEUTRAL	NA	11	"C15orf59,CD276,GOLGA6A,HCN4,LOXL1,NEO1,NPTN,PML,REC114,STOML1,TBC1D21"
TCGA.AA.A01Q.01A	15	73614792	75108460	163	-0.1999	NEUTRAL	NA	24	"ARID3B,C15orf59,CCDC33,CD276,CLK3,CSK,CYP11A1,CYP1A1,CYP1A2,EDC3,GOLGA6A,HCN4,ISLR,ISLR2,LMAN1L,LOXL1,NPTN,PML,REC114,SEMA7A,STOML1,STRA6,TBC1D21,UBL7"
TCGA.AA.A00Q.01A	15	74032231	74472371	41	-0.0317	NEUTRAL	NA	9	"C15orf59,GOLGA6A,ISLR,ISLR2,LOXL1,PML,STOML1,STRA6,TBC1D21"
TCGA.AG.3909.01A	15	74043279	74181326	11	0.358	NEUTRAL	NA	2	"C15orf59,TBC1D21"
TCGA.AM.5820	15	74172152	74628890	115	0.3555	NEUTRAL	NA	9	"CCDC33,GOLGA6A,ISLR,ISLR2,LOXL1,PML,STOML1,STRA6,TBC1D21"
TCGA.AA.A00D.01A	15	74181326	78526716	339	0.0547	NEUTRAL	NA	59	"ACSBG1,ARID3B,C15orf27,C15orf39,CCDC33,CIB2,CLK3,COMMD4,COX5A,CPLX3,CSK,CSPG4,CYP11A1,CYP1A1,CYP1A2,EDC3,ETFA,FAM219B,FBXO22,GOLGA6A,GOLGA6C,GOLGA6D,HMG20A,IDH3A,IMP3,ISL2,ISLR,ISLR2,LINGO1,LMAN1L,LOXL1,MAN2C1,MPI,NEIL1,NRG4,ODF3L1,PEAK1,PML,PPCDC,PSTPIP1,PTPN9,RCN2,RPP25,SCAMP2,SCAMP5,SCAPER,SEMA7A,SH2D7,SIN3A,SNUPN,SNX33,STOML1,STRA6,TBC1D21,TBC1D2B,TSPAN3,UBE2Q2,UBL7,ULK3"
TCGA.AG.3909.01A	15	74219075	74277622	10	-0.4734	NEUTRAL	NA	2	"LOXL1,STOML1"
TCGA.AA.A00N.01A	15	74241753	74336522	20	-0.301	NEUTRAL	NA	3	"LOXL1,PML,STOML1"
TCGA.AA.A010.01A	15	74284381	74428151	18	0.1419	NEUTRAL	NA	4	"GOLGA6A,ISLR2,PML,STOML1"
TCGA.AG.3909.01A	15	74363209	74640204	47	0.0275	NEUTRAL	NA	6	"CCDC33,CYP11A1,GOLGA6A,ISLR,ISLR2,STRA6"
TCGA.AG.4009.01A	15	74467173	74706858	49	0.3317	NEUTRAL	NA	5	"CCDC33,CYP11A1,ISLR,SEMA7A,STRA6"
TCGA.AA.A00Q.01A	15	74473081	75630950	136	0.2915	NEUTRAL	NA	25	"ARID3B,C15orf39,CCDC33,CLK3,COMMD4,COX5A,CPLX3,CSK,CYP11A1,CYP1A1,CYP1A2,EDC3,FAM219B,GOLGA6C,GOLGA6D,LMAN1L,MPI,PPCDC,RPP25,SCAMP2,SCAMP5,SEMA7A,STRA6,UBL7,ULK3"
TCGA.AF.3914.01A	15	74477272	75112325	105	0.0349	NEUTRAL	NA	12	"ARID3B,CCDC33,CLK3,CSK,CYP11A1,CYP1A1,CYP1A2,EDC3,LMAN1L,SEMA7A,STRA6,UBL7"
TCGA.A6.A56B	15	74545641	98296475	7679	-0.4682	NEUTRAL	NA	167	Too-Many
TCGA.AM.5820	15	74634368	75936697	131	0.0629	NEUTRAL	NA	29	"ARID3B,C15orf39,CLK3,COMMD4,COX5A,CPLX3,CSK,CYP11A1,CYP1A1,CYP1A2,EDC3,FAM219B,GOLGA6C,GOLGA6D,IMP3,LMAN1L,MAN2C1,MPI,NEIL1,PPCDC,PTPN9,RPP25,SCAMP2,SCAMP5,SEMA7A,SIN3A,SNUPN,UBL7,ULK3"
TCGA.CK.5914.01A	15	74642413	74967253	47	-0.1635	NEUTRAL	NA	6	"ARID3B,CLK3,CYP11A1,EDC3,SEMA7A,UBL7"
TCGA.AA.A010.01A	15	74702913	75047090	54	-0.1813	NEUTRAL	NA	7	"ARID3B,CLK3,CYP1A1,CYP1A2,EDC3,SEMA7A,UBL7"
TCGA.A6.3808.01A	15	74704234	75968439	202	-0.2961	NEUTRAL	NA	30	"ARID3B,C15orf39,CLK3,COMMD4,COX5A,CPLX3,CSK,CSPG4,CYP1A1,CYP1A2,EDC3,FAM219B,GOLGA6C,GOLGA6D,IMP3,LMAN1L,MAN2C1,MPI,NEIL1,PPCDC,PTPN9,RPP25,SCAMP2,SCAMP5,SEMA7A,SIN3A,SNUPN,SNX33,UBL7,ULK3"
TCGA.AG.4009.01A	15	74708095	75094625	54	-0.1759	NEUTRAL	NA	8	"ARID3B,CLK3,CSK,CYP1A1,CYP1A2,EDC3,SEMA7A,UBL7"
TCGA.AA.A00N.01A	15	74741905	75113395	55	-0.1934	NEUTRAL	NA	8	"ARID3B,CLK3,CSK,CYP1A1,CYP1A2,EDC3,LMAN1L,UBL7"
TCGA.AG.A015.01A	15	74914408	75129490	41	0.1729	NEUTRAL	NA	8	"CLK3,CPLX3,CSK,CYP1A1,CYP1A2,EDC3,LMAN1L,ULK3"
TCGA.AG.4022	15	74920531	102400036	9336	-0.0522	NEUTRAL	NA	185	Too-Many
TCGA.AG.A00C.01A	15	75012793	75304977	57	0.2896	NEUTRAL	NA	12	"COX5A,CPLX3,CSK,CYP1A1,CYP1A2,FAM219B,LMAN1L,MPI,RPP25,SCAMP2,SCAMP5,ULK3"
TCGA.AG.3906.01A	15	75042052	75108791	14	-0.3019	NEUTRAL	NA	3	"CSK,CYP1A2,LMAN1L"
TCGA.CA.6719	15	75107879	102400036	9298	-0.3848	NEUTRAL	NA	180	Too-Many
TCGA.AG.A01W.01A	15	75109850	76261863	67	0.2694	NEUTRAL	NA	26	"C15orf39,COMMD4,COX5A,CPLX3,CSPG4,FAM219B,FBXO22,GOLGA6C,GOLGA6D,IMP3,LMAN1L,MAN2C1,MPI,NEIL1,NRG4,ODF3L1,PPCDC,PTPN9,RPP25,SCAMP2,SCAMP5,SIN3A,SNUPN,SNX33,UBE2Q2,ULK3"
TCGA.AA.3872	15	75109973	87938182	3533	-0.1787	NEUTRAL	NA	104	Too-Many
TCGA.AF.3914.01A	15	75122424	75656303	75	-0.3813	NEUTRAL	NA	15	"C15orf39,COMMD4,COX5A,CPLX3,FAM219B,GOLGA6C,GOLGA6D,MAN2C1,MPI,NEIL1,PPCDC,RPP25,SCAMP2,SCAMP5,ULK3"
TCGA.AA.A01Q.01A	15	75129490	75221405	28	-0.2504	NEUTRAL	NA	5	"COX5A,FAM219B,MPI,SCAMP2,ULK3"
TCGA.AG.A015.01A	15	75130413	90135226	952	-0.149	NEUTRAL	NA	117	Too-Many
TCGA.AG.3906.01A	15	75131270	75648890	53	-0.3459	NEUTRAL	NA	14	"C15orf39,COMMD4,COX5A,FAM219B,GOLGA6C,GOLGA6D,MAN2C1,MPI,NEIL1,PPCDC,RPP25,SCAMP2,SCAMP5,ULK3"
TCGA.AA.A010.01A	15	75165477	75249208	20	0.13	NEUTRAL	NA	5	"COX5A,FAM219B,MPI,RPP25,SCAMP2"
TCGA.AA.A00N.01A	15	75248284	75628334	20	0.3324	NEUTRAL	NA	6	"C15orf39,GOLGA6C,GOLGA6D,PPCDC,RPP25,SCAMP5"
TCGA.AA.A01Q.01A	15	75248284	75632005	19	0.1517	NEUTRAL	NA	7	"C15orf39,COMMD4,GOLGA6C,GOLGA6D,PPCDC,RPP25,SCAMP5"
TCGA.CK.5914.01A	15	75248696	75630372	20	0.2196	NEUTRAL	NA	7	"C15orf39,COMMD4,GOLGA6C,GOLGA6D,PPCDC,RPP25,SCAMP5"
TCGA.AG.4009.01A	15	75304098	75341433	11	0.1944	NEUTRAL	NA	2	"PPCDC,SCAMP5"
TCGA.AG.A00C.01A	15	75308896	75722480	59	-0.0154	NEUTRAL	NA	9	"C15orf39,COMMD4,GOLGA6C,GOLGA6D,MAN2C1,NEIL1,PPCDC,SCAMP5,SIN3A"
TCGA.AA.A010.01A	15	75320608	75660772	39	0.2739	NEUTRAL	NA	7	"C15orf39,COMMD4,GOLGA6C,GOLGA6D,MAN2C1,NEIL1,PPCDC"
TCGA.AG.4009.01A	15	75498410	75656789	28	-0.4059	NEUTRAL	NA	6	"C15orf39,COMMD4,GOLGA6C,GOLGA6D,MAN2C1,NEIL1"
TCGA.AA.A00N.01A	15	75630372	75686979	36	-0.3089	NEUTRAL	NA	4	"COMMD4,MAN2C1,NEIL1,SIN3A"
TCGA.CK.5914.01A	15	75630652	75672927	30	-0.4554	NEUTRAL	NA	4	"COMMD4,MAN2C1,NEIL1,SIN3A"
TCGA.AA.A00Q.01A	15	75631274	75681953	30	-0.0561	NEUTRAL	NA	4	"COMMD4,MAN2C1,NEIL1,SIN3A"
TCGA.AA.A01Q.01A	15	75641210	75658802	20	-0.4148	NEUTRAL	NA	2	"MAN2C1,NEIL1"
TCGA.AG.A02G.01A	15	75645913	78825510	261	-0.4695	NEUTRAL	NA	32	"ACSBG1,C15orf27,CIB2,CRABP1,CSPG4,DNAJA4,ETFA,FBXO22,HMG20A,HYKK,IDH3A,IMP3,IREB2,ISL2,LINGO1,MAN2C1,NEIL1,NRG4,ODF3L1,PEAK1,PSTPIP1,PTPN9,RCN2,SCAPER,SH2D7,SIN3A,SNUPN,SNX33,TBC1D2B,TSPAN3,UBE2Q2,WDR61"
TCGA.AF.3914.01A	15	75656789	89821865	883	-0.0162	NEUTRAL	NA	101	Too-Many
TCGA.AG.4009.01A	15	75658802	75722480	21	0.1625	NEUTRAL	NA	2	"MAN2C1,SIN3A"
TCGA.AA.A01Q.01A	15	75659800	78557051	178	0.0131	NEUTRAL	NA	27	"ACSBG1,C15orf27,CIB2,CSPG4,DNAJA4,ETFA,FBXO22,HMG20A,IDH3A,IMP3,ISL2,LINGO1,MAN2C1,NRG4,ODF3L1,PEAK1,PSTPIP1,PTPN9,RCN2,SCAPER,SH2D7,SIN3A,SNUPN,SNX33,TBC1D2B,TSPAN3,UBE2Q2"
TCGA.CK.5914.01A	15	75673923	75762085	18	0.2188	NEUTRAL	NA	2	"PTPN9,SIN3A"
TCGA.AA.A00Q.01A	15	75684582	85610218	519	0.3589	NEUTRAL	NA	85	"ABHD17C,ACSBG1,ADAMTS7,ADAMTSL3,ALPK3,ANKRD34C,AP3B2,ARNT2,BCL2A1,BNC1,BTBD1,C15orf26,C15orf27,C15orf40,CEMIP,CHRNA3,CHRNA5,CHRNB4,CIB2,CPEB1,CRABP1,CSPG4,CTSH,DNAJA4,EFTUD1,ETFA,FAH,FAM103A1,FBXO22,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HDGFRP3,HMG20A,HOMER2,HYKK,IDH3A,IL16,IMP3,IREB2,ISL2,KIAA1024,LINGO1,MESDC1,MESDC2,MEX3B,MORF4L1,MTHFS,NMB,NRG4,ODF3L1,PDE8A,PEAK1,PSMA4,PSTPIP1,PTPN9,RASGRF1,RCN2,RPS17,SAXO2,SCAPER,SEC11A,SH2D7,SH3GL3,SIN3A,SLC28A1,SNUPN,SNX33,ST20,ST20-MTHFS,STARD5,TBC1D2B,TM6SF1,TMC3,TMED3,TSPAN3,UBE2Q2,UBE2Q2L,WDR61,WDR73,WHAMM,ZFAND6,ZNF592,ZSCAN2"
TCGA.AA.A010.01A	15	75692341	75722480	10	0.1877	NEUTRAL	NA	1	SIN3A
TCGA.AA.A02H.01A	15	75699352	76016494	37	-0.4285	NEUTRAL	NA	7	"CSPG4,IMP3,ODF3L1,PTPN9,SIN3A,SNUPN,SNX33"
TCGA.F4.6461	15	75718668	80614966	1345	-0.0082	NEUTRAL	NA	47	"ACSBG1,ADAMTS7,ANKRD34C,BCL2A1,C15orf27,CHRNA3,CHRNA5,CHRNB4,CIB2,CRABP1,CSPG4,CTSH,DNAJA4,ETFA,FAH,FBXO22,HMG20A,HYKK,IDH3A,IMP3,IREB2,ISL2,KIAA1024,LINGO1,MORF4L1,MTHFS,NRG4,ODF3L1,PEAK1,PSMA4,PSTPIP1,PTPN9,RASGRF1,RCN2,SCAPER,SH2D7,SIN3A,SNUPN,SNX33,ST20,ST20-MTHFS,TBC1D2B,TMED3,TSPAN3,UBE2Q2,WDR61,ZFAND6"
TCGA.AG.4009.01A	15	75809562	76584712	73	0.03	NEUTRAL	NA	11	"C15orf27,CSPG4,ETFA,FBXO22,IMP3,NRG4,ODF3L1,PTPN9,SNUPN,SNX33,UBE2Q2"
TCGA.CK.5914.01A	15	75809562	76646252	88	-0.2753	NEUTRAL	NA	13	"C15orf27,CSPG4,ETFA,FBXO22,IMP3,ISL2,NRG4,ODF3L1,PTPN9,SCAPER,SNUPN,SNX33,UBE2Q2"
TCGA.AA.A00N.01A	15	75815411	76165719	37	-0.5002	NEUTRAL	NA	7	"CSPG4,IMP3,ODF3L1,PTPN9,SNUPN,SNX33,UBE2Q2"
TCGA.AG.A00C.01A	15	75819421	78790327	216	0.0697	NEUTRAL	NA	28	"ACSBG1,C15orf27,CIB2,CRABP1,CSPG4,DNAJA4,ETFA,FBXO22,HMG20A,IDH3A,IMP3,IREB2,ISL2,LINGO1,NRG4,ODF3L1,PEAK1,PSTPIP1,PTPN9,RCN2,SCAPER,SH2D7,SNUPN,SNX33,TBC1D2B,TSPAN3,UBE2Q2,WDR61"
TCGA.AA.A010.01A	15	75897428	76135996	27	0.193	NEUTRAL	NA	6	"CSPG4,IMP3,ODF3L1,SNUPN,SNX33,UBE2Q2"
TCGA.AG.3891.01A	15	75931918	86814795	723	0.0544	NEUTRAL	NA	85	"ABHD17C,ACSBG1,ADAMTS7,ADAMTSL3,AGBL1,AKAP13,ALPK3,ANKRD34C,AP3B2,ARNT2,BCL2A1,BNC1,BTBD1,C15orf26,C15orf27,C15orf40,CEMIP,CHRNA3,CHRNA5,CHRNB4,CIB2,CPEB1,CRABP1,CSPG4,CTSH,DNAJA4,EFTUD1,ETFA,FAH,FAM103A1,FBXO22,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HDGFRP3,HMG20A,HOMER2,HYKK,IDH3A,IL16,IMP3,IREB2,ISL2,KIAA1024,KLHL25,LINGO1,MESDC1,MESDC2,MEX3B,MORF4L1,MTHFS,NMB,NRG4,ODF3L1,PDE8A,PEAK1,PSMA4,PSTPIP1,RASGRF1,RCN2,RPS17,SAXO2,SCAPER,SEC11A,SH2D7,SH3GL3,SLC28A1,SNX33,ST20,ST20-MTHFS,STARD5,TBC1D2B,TM6SF1,TMC3,TMED3,TSPAN3,UBE2Q2,UBE2Q2L,WDR61,WDR73,WHAMM,ZFAND6,ZNF592,ZSCAN2"
TCGA.A6.3808.01A	15	76004961	76673677	62	-0.1614	NEUTRAL	NA	9	"C15orf27,CSPG4,ETFA,FBXO22,ISL2,NRG4,ODF3L1,SCAPER,UBE2Q2"
TCGA.AA.A02H.01A	15	76017412	76426522	27	0.2116	NEUTRAL	NA	5	"C15orf27,FBXO22,NRG4,ODF3L1,UBE2Q2"
TCGA.AM.5820	15	76064899	76439741	82	-0.1612	NEUTRAL	NA	4	"C15orf27,FBXO22,NRG4,UBE2Q2"
TCGA.AA.A00N.01A	15	76168470	76467851	26	0.2309	NEUTRAL	NA	4	"C15orf27,FBXO22,NRG4,UBE2Q2"
TCGA.G4.6322	15	76290041	95411104	6451	-0.0113	NEUTRAL	NA	130	Too-Many
TCGA.AG.A01W.01A	15	76422857	77018454	92	0.2086	NEUTRAL	NA	4	"C15orf27,ETFA,ISL2,SCAPER"
TCGA.AA.A02H.01A	15	76429996	76696844	26	-0.2543	NEUTRAL	NA	4	"C15orf27,ETFA,ISL2,SCAPER"
TCGA.AM.5820	15	76513552	77786902	187	-0.034	NEUTRAL	NA	8	"ETFA,HMG20A,ISL2,PEAK1,PSTPIP1,RCN2,SCAPER,TSPAN3"
TCGA.CM.5348	15	76528830	102400036	9114	0.2759	NEUTRAL	NA	153	Too-Many
TCGA.CK.5914.01A	15	76668466	77154720	27	0.3662	NEUTRAL	NA	1	SCAPER
TCGA.AG.4009.01A	15	76673677	78790327	140	-0.0808	NEUTRAL	NA	16	"ACSBG1,CIB2,CRABP1,DNAJA4,HMG20A,IDH3A,IREB2,LINGO1,PEAK1,PSTPIP1,RCN2,SCAPER,SH2D7,TBC1D2B,TSPAN3,WDR61"
TCGA.AA.A010.01A	15	76726382	77092542	19	0.3379	NEUTRAL	NA	1	SCAPER
TCGA.AA.A02H.01A	15	76726382	81440629	301	0.328	NEUTRAL	NA	40	"ABHD17C,ACSBG1,ADAMTS7,ANKRD34C,ARNT2,BCL2A1,C15orf26,CEMIP,CHRNA3,CHRNA5,CHRNB4,CIB2,CRABP1,CTSH,DNAJA4,FAH,HMG20A,HYKK,IDH3A,IREB2,KIAA1024,LINGO1,MESDC1,MESDC2,MORF4L1,MTHFS,PEAK1,PSMA4,PSTPIP1,RASGRF1,RCN2,SCAPER,SH2D7,ST20,ST20-MTHFS,TBC1D2B,TMED3,TSPAN3,WDR61,ZFAND6"
TCGA.AG.A01W.01A	15	77041489	77071041	7	-0.3874	NEUTRAL	NA	1	SCAPER
TCGA.AG.A01W.01A	15	77075071	79403356	142	0.2617	NEUTRAL	NA	25	"ACSBG1,ADAMTS7,CHRNA3,CHRNA5,CHRNB4,CIB2,CRABP1,CTSH,DNAJA4,HMG20A,HYKK,IDH3A,IREB2,LINGO1,MORF4L1,PEAK1,PSMA4,PSTPIP1,RASGRF1,RCN2,SCAPER,SH2D7,TBC1D2B,TSPAN3,WDR61"
TCGA.AA.A010.01A	15	77096824	77329337	26	-0.3136	NEUTRAL	NA	3	"PSTPIP1,RCN2,SCAPER"
TCGA.DY.A1DG	15	77143512	100394055	8134	-0.0099	NEUTRAL	NA	137	Too-Many
TCGA.AA.A02K.01A	15	77176103	77348390	25	0.1344	NEUTRAL	NA	4	"PSTPIP1,RCN2,SCAPER,TSPAN3"
TCGA.AA.A00N.01A	15	77240724	77329337	16	-0.2108	NEUTRAL	NA	2	"PSTPIP1,RCN2"
TCGA.CK.5914.01A	15	77287842	78557051	85	0.1735	NEUTRAL	NA	11	"ACSBG1,CIB2,DNAJA4,HMG20A,IDH3A,LINGO1,PEAK1,PSTPIP1,SH2D7,TBC1D2B,TSPAN3"
TCGA.AG.3909.01A	15	77317546	78403469	43	-0.1182	NEUTRAL	NA	8	"CIB2,HMG20A,LINGO1,PEAK1,PSTPIP1,SH2D7,TBC1D2B,TSPAN3"
TCGA.AA.3980.01A	15	77322794	77339145	5	0.2449	NEUTRAL	NA	2	"PSTPIP1,TSPAN3"
TCGA.AA.3980.01A	15	77344667	102462347	1446	-0.491	NEUTRAL	NA	149	Too-Many
TCGA.AA.A010.01A	15	77363169	78322319	28	-0.0879	NEUTRAL	NA	5	"HMG20A,LINGO1,PEAK1,TBC1D2B,TSPAN3"
TCGA.A6.3808.01A	15	77363169	78780515	102	0.1171	NEUTRAL	NA	13	"ACSBG1,CIB2,CRABP1,DNAJA4,HMG20A,IDH3A,IREB2,LINGO1,PEAK1,SH2D7,TBC1D2B,TSPAN3,WDR61"
TCGA.AA.A02K.01A	15	77363170	81214303	277	-0.062	NEUTRAL	NA	34	"ABHD17C,ACSBG1,ADAMTS7,ANKRD34C,ARNT2,BCL2A1,CEMIP,CHRNA3,CHRNA5,CHRNB4,CIB2,CRABP1,CTSH,DNAJA4,FAH,HMG20A,HYKK,IDH3A,IREB2,KIAA1024,LINGO1,MORF4L1,MTHFS,PEAK1,PSMA4,RASGRF1,SH2D7,ST20,ST20-MTHFS,TBC1D2B,TMED3,TSPAN3,WDR61,ZFAND6"
TCGA.AA.A00A.01A	15	77406840	77472704	4	-0.4114	NEUTRAL	NA	1	PEAK1
TCGA.AG.3881	15	77535784	102400036	8963	-0.2982	NEUTRAL	NA	147	Too-Many
TCGA.AA.3509.01A	15	77764041	101009536	1323	-0.039	NEUTRAL	NA	134	Too-Many
TCGA.EI.6513	15	77803659	102400036	8932	0.0105	NEUTRAL	NA	145	Too-Many
TCGA.AM.5820	15	78304735	78692430	138	0.2092	NEUTRAL	NA	8	"ACSBG1,CIB2,CRABP1,DNAJA4,IDH3A,SH2D7,TBC1D2B,WDR61"
TCGA.AA.A00N.01A	15	78305158	78441683	23	0.2798	NEUTRAL	NA	3	"CIB2,SH2D7,TBC1D2B"
TCGA.AA.A010.01A	15	78423446	78461219	10	-0.3606	NEUTRAL	NA	2	"CIB2,IDH3A"
TCGA.AG.3909.01A	15	78486217	78557051	5	0.1312	NEUTRAL	NA	2	"ACSBG1,DNAJA4"
TCGA.AG.3906.01A	15	78500297	79066915	71	-0.4653	NEUTRAL	NA	11	"ACSBG1,ADAMTS7,CHRNA3,CHRNA5,CHRNB4,CRABP1,DNAJA4,HYKK,IREB2,PSMA4,WDR61"
TCGA.G4.6626	15	78507315	102400036	8734	0.1875	NEUTRAL	NA	140	Too-Many
TCGA.AA.A00A.01A	15	78582243	78730602	9	0.303	NEUTRAL	NA	3	"CRABP1,IREB2,WDR61"
TCGA.AA.A01Q.01A	15	78632764	79265595	90	-0.065	NEUTRAL	NA	11	"ADAMTS7,CHRNA3,CHRNA5,CHRNB4,CRABP1,CTSH,HYKK,IREB2,MORF4L1,PSMA4,RASGRF1"
TCGA.AA.A01Z	15	78657376	92501071	4504	0.0177	NEUTRAL	NA	105	Too-Many
TCGA.AM.5820	15	78695910	79023819	88	-0.0784	NEUTRAL	NA	6	"CHRNA3,CHRNA5,CHRNB4,HYKK,IREB2,PSMA4"
TCGA.AA.A00N.01A	15	78755217	78782727	15	-0.2737	NEUTRAL	NA	1	IREB2
TCGA.AG.4009.01A	15	78805384	79183774	43	-0.3923	NEUTRAL	NA	7	"ADAMTS7,CHRNA3,CHRNA5,CHRNB4,HYKK,MORF4L1,PSMA4"
TCGA.AG.A02G.01A	15	78837937	102462347	1231	-0.5057	NEUTRAL	NA	135	Too-Many
TCGA.AG.A00C.01A	15	78873101	79254433	48	0.2056	NEUTRAL	NA	7	"ADAMTS7,CHRNA3,CHRNA5,CHRNB4,CTSH,MORF4L1,RASGRF1"
TCGA.CK.5914.01A	15	78878908	81134277	151	-0.1705	NEUTRAL	NA	19	"ABHD17C,ADAMTS7,ANKRD34C,ARNT2,BCL2A1,CEMIP,CHRNA3,CHRNA5,CHRNB4,CTSH,FAH,KIAA1024,MORF4L1,MTHFS,RASGRF1,ST20,ST20-MTHFS,TMED3,ZFAND6"
TCGA.AA.A00D.01A	15	78882116	79090242	19	0.0368	NEUTRAL	NA	4	"ADAMTS7,CHRNA3,CHRNA5,CHRNB4"
TCGA.AA.A010.01A	15	78910885	79189301	45	0.0924	NEUTRAL	NA	4	"ADAMTS7,CHRNA3,CHRNB4,MORF4L1"
TCGA.AA.A00N.01A	15	78917438	79264145	58	-0.3702	NEUTRAL	NA	5	"ADAMTS7,CHRNB4,CTSH,MORF4L1,RASGRF1"
TCGA.AG.3909.01A	15	79056001	81426629	154	-0.4294	NEUTRAL	NA	18	"ABHD17C,ADAMTS7,ANKRD34C,ARNT2,BCL2A1,CEMIP,CTSH,FAH,KIAA1024,MESDC1,MESDC2,MORF4L1,MTHFS,RASGRF1,ST20,ST20-MTHFS,TMED3,ZFAND6"
TCGA.AG.3906.01A	15	79068478	79092534	8	0.038	NEUTRAL	NA	1	ADAMTS7
TCGA.AM.5820	15	79080233	91339414	3940	0.0405	NEUTRAL	NA	89	"ABHD17C,ABHD2,ACAN,ADAMTS7,ADAMTSL3,AEN,AGBL1,AKAP13,ALPK3,ANKRD34C,ANPEP,AP3B2,AP3S2,ARNT2,ARPIN,BCL2A1,BLM,BNC1,BTBD1,C15orf26,C15orf38-AP3S2,C15orf40,CEMIP,CIB1,CPEB1,CRTC3,CTSH,DET1,EFTUD1,FAH,FAM103A1,FANCI,FSD2,GDPGP1,GOLGA6L10,GOLGA6L4,GOLGA6L9,HAPLN3,HDGFRP3,HOMER2,IDH2,IL16,IQGAP1,ISG20,KIAA1024,KIF7,KLHL25,MESDC1,MESDC2,MESP1,MESP2,MEX3B,MFGE8,MORF4L1,MRPL46,MRPS11,MTHFS,NGRN,NMB,NTRK3,PDE8A,PEX11A,PLIN1,POLG,RASGRF1,RHCG,RLBP1,RPS17,SAXO2,SEC11A,SEMA4B,SH3GL3,SLC28A1,ST20,ST20-MTHFS,STARD5,TICRR,TM6SF1,TMC3,TMED3,UBE2Q2L,WDR73,WDR93,WHAMM,ZFAND6,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AG.4009.01A	15	79184506	79350669	41	0.2327	NEUTRAL	NA	3	"CTSH,MORF4L1,RASGRF1"
TCGA.AA.A00D.01A	15	79189301	83499299	151	-0.0469	NEUTRAL	NA	31	"ABHD17C,ANKRD34C,AP3B2,ARNT2,BCL2A1,C15orf26,CEMIP,CPEB1,CTSH,EFTUD1,FAH,FSD2,GOLGA6L10,GOLGA6L9,IL16,KIAA1024,MESDC1,MESDC2,MEX3B,MORF4L1,MTHFS,RASGRF1,RPS17,SAXO2,ST20,ST20-MTHFS,STARD5,TMC3,TMED3,WHAMM,ZFAND6"
TCGA.A6.3808.01A	15	79214411	83447480	250	0.3023	NEUTRAL	NA	29	"ABHD17C,ANKRD34C,AP3B2,ARNT2,BCL2A1,C15orf26,CEMIP,CPEB1,CTSH,EFTUD1,FAH,FSD2,GOLGA6L10,GOLGA6L9,IL16,KIAA1024,MESDC1,MESDC2,MEX3B,MTHFS,RASGRF1,RPS17,SAXO2,ST20,ST20-MTHFS,STARD5,TMC3,TMED3,ZFAND6"
TCGA.AG.A00C.01A	15	79264145	81235239	107	-0.1389	NEUTRAL	NA	13	"ABHD17C,ANKRD34C,ARNT2,BCL2A1,CEMIP,FAH,KIAA1024,MTHFS,RASGRF1,ST20,ST20-MTHFS,TMED3,ZFAND6"
TCGA.AA.A01Q.01A	15	79317608	81212393	77	0.0106	NEUTRAL	NA	13	"ABHD17C,ANKRD34C,ARNT2,BCL2A1,CEMIP,FAH,KIAA1024,MTHFS,RASGRF1,ST20,ST20-MTHFS,TMED3,ZFAND6"
TCGA.AG.4009.01A	15	79356715	80415001	20	-0.1573	NEUTRAL	NA	9	"ANKRD34C,BCL2A1,KIAA1024,MTHFS,RASGRF1,ST20,ST20-MTHFS,TMED3,ZFAND6"
TCGA.AA.3941	15	79894529	80637748	316	0.3647	NEUTRAL	NA	6	"BCL2A1,FAH,MTHFS,ST20,ST20-MTHFS,ZFAND6"
TCGA.AA.3982	15	79894529	86892976	1911	-0.1252	NEUTRAL	NA	47	"ABHD17C,ADAMTSL3,AGBL1,AKAP13,ALPK3,AP3B2,ARNT2,BCL2A1,BNC1,BTBD1,C15orf26,C15orf40,CEMIP,CPEB1,EFTUD1,FAH,FAM103A1,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HDGFRP3,HOMER2,IL16,KLHL25,MESDC1,MESDC2,MEX3B,MTHFS,NMB,PDE8A,RPS17,SAXO2,SEC11A,SH3GL3,SLC28A1,ST20,ST20-MTHFS,STARD5,TM6SF1,TMC3,UBE2Q2L,WDR73,WHAMM,ZFAND6,ZNF592,ZSCAN2"
TCGA.AG.A01W.01A	15	80317667	81142221	34	0.0606	NEUTRAL	NA	5	"ABHD17C,ARNT2,CEMIP,FAH,ZFAND6"
TCGA.AG.4009.01A	15	80423475	81274251	64	0.2635	NEUTRAL	NA	6	"ABHD17C,ARNT2,CEMIP,FAH,MESDC2,ZFAND6"
TCGA.BM.6198	15	81014955	102400036	7765	0.05885	NEUTRAL	NA	116	Too-Many
TCGA.AF.2689	15	81083214	81279355	85	-0.3936	NEUTRAL	NA	2	"CEMIP,MESDC2"
TCGA.AA.A010.01A	15	81134277	81201397	13	0.2871	NEUTRAL	NA	1	CEMIP
TCGA.AA.A01Q.01A	15	81213309	81241086	14	-0.4608	NEUTRAL	NA	1	CEMIP
TCGA.CK.5914.01A	15	81213309	81294595	18	-0.044	NEUTRAL	NA	3	"CEMIP,MESDC1,MESDC2"
TCGA.AA.A02K.01A	15	81216908	81241087	12	-0.4177	NEUTRAL	NA	1	CEMIP
TCGA.AG.A01W.01A	15	81231656	81245961	8	-0.1475	NEUTRAL	NA	1	CEMIP
TCGA.AG.A01W.01A	15	81248585	81567396	44	0.2539	NEUTRAL	NA	4	"C15orf26,IL16,MESDC1,MESDC2"
TCGA.AA.A01Q.01A	15	81271508	89828286	308	0.1152	NEUTRAL	NA	50	"ABHD2,ACAN,ADAMTSL3,AEN,AGBL1,AKAP13,ALPK3,AP3B2,BNC1,BTBD1,C15orf26,C15orf40,CPEB1,DET1,EFTUD1,FAM103A1,FANCI,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HAPLN3,HDGFRP3,HOMER2,IL16,ISG20,KLHL25,MESDC1,MESDC2,MEX3B,MFGE8,MRPL46,MRPS11,NMB,NTRK3,PDE8A,RLBP1,RPS17,SAXO2,SEC11A,SH3GL3,SLC28A1,STARD5,TM6SF1,TMC3,UBE2Q2L,WDR73,WHAMM,ZNF592,ZSCAN2"
TCGA.AA.A02K.01A	15	81271509	85149687	237	-0.0964	NEUTRAL	NA	28	"ADAMTSL3,AP3B2,BNC1,BTBD1,C15orf26,C15orf40,CPEB1,EFTUD1,FAM103A1,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HDGFRP3,HOMER2,IL16,MESDC1,MESDC2,MEX3B,RPS17,SAXO2,SH3GL3,STARD5,TM6SF1,TMC3,UBE2Q2L,WHAMM,ZSCAN2"
TCGA.AG.4009.01A	15	81281893	81557948	12	-0.3496	NEUTRAL	NA	4	"C15orf26,IL16,MESDC1,MESDC2"
TCGA.AF.2689	15	81285874	89529438	2488	-0.0271	NEUTRAL	NA	46	"ACAN,ADAMTSL3,AEN,AGBL1,AKAP13,ALPK3,AP3B2,BNC1,BTBD1,C15orf26,C15orf40,CPEB1,DET1,EFTUD1,FAM103A1,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HAPLN3,HDGFRP3,HOMER2,IL16,ISG20,KLHL25,MESDC1,MEX3B,MFGE8,MRPL46,MRPS11,NMB,NTRK3,PDE8A,RPS17,SAXO2,SEC11A,SH3GL3,SLC28A1,STARD5,TM6SF1,TMC3,UBE2Q2L,WDR73,WHAMM,ZNF592,ZSCAN2"
TCGA.AG.A00C.01A	15	81296351	82533574	71	-0.2017	NEUTRAL	NA	6	"C15orf26,EFTUD1,IL16,MEX3B,STARD5,TMC3"
TCGA.AA.3856	15	81420649	102400036	7603	0.2167	NEUTRAL	NA	112	Too-Many
TCGA.F4.6461	15	81465978	87622062	1656	0.0029	NEUTRAL	NA	35	"ADAMTSL3,AGBL1,AKAP13,ALPK3,AP3B2,BNC1,BTBD1,C15orf40,CPEB1,EFTUD1,FAM103A1,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HDGFRP3,HOMER2,IL16,KLHL25,MEX3B,NMB,PDE8A,RPS17,SAXO2,SEC11A,SH3GL3,SLC28A1,STARD5,TM6SF1,TMC3,UBE2Q2L,WDR73,WHAMM,ZNF592,ZSCAN2"
TCGA.AG.3909.01A	15	81517722	82530680	62	-0.2146	NEUTRAL	NA	5	"EFTUD1,IL16,MEX3B,STARD5,TMC3"
TCGA.AG.4009.01A	15	81561831	81641748	33	0.1734	NEUTRAL	NA	3	"IL16,STARD5,TMC3"
TCGA.AG.A01W.01A	15	81572505	81582500	5	-0.1762	NEUTRAL	NA	1	IL16
TCGA.CK.5914.01A	15	81600894	81636216	17	-0.1	NEUTRAL	NA	3	"IL16,STARD5,TMC3"
TCGA.AA.A00L.01A	15	81616290	83501981	24	0.0769	NEUTRAL	NA	12	"AP3B2,CPEB1,EFTUD1,FSD2,GOLGA6L10,GOLGA6L9,MEX3B,RPS17,SAXO2,STARD5,TMC3,WHAMM"
TCGA.AG.4009.01A	15	81644004	82574438	32	-0.0801	NEUTRAL	NA	4	"EFTUD1,MEX3B,SAXO2,TMC3"
TCGA.AA.A010.01A	15	81660560	83832698	119	-0.2244	NEUTRAL	NA	17	"AP3B2,BTBD1,C15orf40,CPEB1,EFTUD1,FAM103A1,FSD2,GOLGA6L10,GOLGA6L9,HDGFRP3,HOMER2,MEX3B,RPS17,SAXO2,TM6SF1,TMC3,WHAMM"
TCGA.AA.3941	15	81691073	82034530	86	-0.0809	NEUTRAL	NA	0	None
TCGA.D5.6535	15	82008312	102400036	7434	-0.3444	NEUTRAL	NA	108	Too-Many
TCGA.DC.6681	15	82306384	83358387	122	-0.4425	NEUTRAL	NA	8	"AP3B2,CPEB1,EFTUD1,GOLGA6L10,GOLGA6L9,MEX3B,RPS17,SAXO2"
TCGA.AG.A00C.01A	15	82544974	83357848	35	0.2645	NEUTRAL	NA	7	"AP3B2,CPEB1,EFTUD1,GOLGA6L10,GOLGA6L9,RPS17,SAXO2"
TCGA.CK.5914.01A	15	82544974	83561395	66	-0.2841	NEUTRAL	NA	10	"AP3B2,CPEB1,EFTUD1,FSD2,GOLGA6L10,GOLGA6L9,HOMER2,RPS17,SAXO2,WHAMM"
TCGA.AG.3906.01A	15	83215135	83222576	6	0.1287	NEUTRAL	NA	1	CPEB1
TCGA.AG.4009.01A	15	83215135	83240072	9	0.267	NEUTRAL	NA	1	CPEB1
TCGA.AA.A00N.01A	15	83224572	83561395	55	-0.272	NEUTRAL	NA	5	"AP3B2,CPEB1,FSD2,HOMER2,WHAMM"
TCGA.AG.4009.01A	15	83295927	83358091	22	-0.4529	NEUTRAL	NA	2	"AP3B2,CPEB1"
TCGA.AG.A00C.01A	15	83358091	83561395	27	-0.0263	NEUTRAL	NA	4	"AP3B2,FSD2,HOMER2,WHAMM"
TCGA.DC.6681	15	83366295	102400036	7207	-0.0047	NEUTRAL	NA	101	Too-Many
TCGA.D5.6538	15	83380837	90334239	2297	0.338	NEUTRAL	NA	46	"ABHD2,ACAN,ADAMTSL3,AEN,AGBL1,AKAP13,ALPK3,ANPEP,BNC1,BTBD1,C15orf40,DET1,FAM103A1,FANCI,FSD2,GOLGA6L4,HAPLN3,HDGFRP3,HOMER2,ISG20,KIF7,KLHL25,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NMB,NTRK3,PDE8A,PEX11A,PLIN1,POLG,RHCG,RLBP1,SEC11A,SH3GL3,SLC28A1,TICRR,TM6SF1,UBE2Q2L,WDR73,WDR93,WHAMM,ZNF592,ZSCAN2"
TCGA.AG.4009.01A	15	83428082	83447480	8	0.0577	NEUTRAL	NA	1	FSD2
TCGA.AG.3909.01A	15	83428082	83478460	12	-0.0025	NEUTRAL	NA	2	"FSD2,WHAMM"
TCGA.AG.4009.01A	15	83451508	83495129	6	-0.4383	NEUTRAL	NA	2	"FSD2,WHAMM"
TCGA.AG.4009.01A	15	83495454	83561395	10	0.1271	NEUTRAL	NA	2	"HOMER2,WHAMM"
TCGA.A6.3808.01A	15	83499299	91298014	569	0.1765	NEUTRAL	NA	58	"ABHD2,ACAN,ADAMTSL3,AEN,AGBL1,AKAP13,ALPK3,ANPEP,AP3S2,ARPIN,BLM,BNC1,BTBD1,C15orf38-AP3S2,C15orf40,CIB1,CRTC3,DET1,FAM103A1,FANCI,GDPGP1,GOLGA6L4,HAPLN3,HDGFRP3,HOMER2,IDH2,IQGAP1,ISG20,KIF7,KLHL25,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NTRK3,PDE8A,PEX11A,PLIN1,POLG,RHCG,RLBP1,SEC11A,SEMA4B,SH3GL3,SLC28A1,TICRR,TM6SF1,UBE2Q2L,WDR73,WDR93,WHAMM,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AA.3861.01A	15	83501981	102462347	994	-0.1311	NEUTRAL	NA	100	"ABHD2,ACAN,ADAMTS17,ADAMTSL3,AEN,AGBL1,AKAP13,ALDH1A3,ALPK3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,BNC1,BTBD1,C15orf32,C15orf38-AP3S2,C15orf40,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM103A1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,GOLGA6L4,HAPLN3,HDDC3,HDGFRP3,HOMER2,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NR2F2,NTRK3,OR4F15,OR4F4,OR4F6,PCSK6,PDE8A,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEC11A,SEMA4B,SH3GL3,SLC28A1,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TM6SF1,TTC23,UBE2Q2L,UNC45A,VIMP,VPS33B,WDR73,WDR93,WHAMM,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AG.A00C.01A	15	83657734	83805211	22	0.3475	NEUTRAL	NA	4	"BTBD1,C15orf40,FAM103A1,TM6SF1"
TCGA.AG.4009.01A	15	83657734	83936833	32	-0.4403	NEUTRAL	NA	6	"BNC1,BTBD1,C15orf40,FAM103A1,HDGFRP3,TM6SF1"
TCGA.CK.5914.01A	15	83735466	83790658	6	-0.4549	NEUTRAL	NA	2	"BTBD1,TM6SF1"
TCGA.AG.3909.01A	15	83735466	84553801	39	-0.4176	NEUTRAL	NA	6	"ADAMTSL3,BNC1,BTBD1,HDGFRP3,SH3GL3,TM6SF1"
TCGA.CK.5914.01A	15	83791487	84568344	40	0.1556	NEUTRAL	NA	5	"ADAMTSL3,BNC1,HDGFRP3,SH3GL3,TM6SF1"
TCGA.AA.A00D.01A	15	83793383	91560984	550	0.044	NEUTRAL	NA	61	"ABHD2,ACAN,ADAMTSL3,AEN,AGBL1,AKAP13,ALPK3,ANPEP,AP3S2,ARPIN,BLM,BNC1,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,GOLGA6L4,HAPLN3,HDDC3,HDGFRP3,IDH2,IQGAP1,ISG20,KIF7,KLHL25,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NTRK3,PDE8A,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEC11A,SEMA4B,SH3GL3,SLC28A1,TICRR,TM6SF1,UBE2Q2L,UNC45A,VPS33B,WDR73,WDR93,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AA.A00N.01A	15	83805211	84539506	30	0.2076	NEUTRAL	NA	5	"ADAMTSL3,BNC1,HDGFRP3,SH3GL3,TM6SF1"
TCGA.AG.A00C.01A	15	83807935	84442248	22	-0.1619	NEUTRAL	NA	4	"ADAMTSL3,BNC1,HDGFRP3,SH3GL3"
TCGA.DM.A1D4	15	83991290	102400036	7112	-0.0024	NEUTRAL	NA	91	"ABHD2,ACAN,ADAMTS17,ADAMTSL3,AEN,AGBL1,AKAP13,ALDH1A3,ALPK3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,GOLGA6L4,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PDE8A,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEC11A,SEMA4B,SH3GL3,SLC28A1,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UBE2Q2L,UNC45A,VIMP,VPS33B,WDR73,WDR93,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AA.A010.01A	15	84116212	85382172	75	-0.1018	NEUTRAL	NA	10	"ADAMTSL3,ALPK3,GOLGA6L4,NMB,SEC11A,SH3GL3,UBE2Q2L,WDR73,ZNF592,ZSCAN2"
TCGA.AG.4009.01A	15	84159524	85159476	41	0.0128	NEUTRAL	NA	5	"ADAMTSL3,GOLGA6L4,SH3GL3,UBE2Q2L,ZSCAN2"
TCGA.G4.6303	15	84321428	87353488	966	-0.0558	NEUTRAL	NA	14	"ADAMTSL3,AGBL1,AKAP13,ALPK3,GOLGA6L4,KLHL25,NMB,PDE8A,SEC11A,SLC28A1,UBE2Q2L,WDR73,ZNF592,ZSCAN2"
TCGA.AA.3941	15	84349088	85103070	109	0.1354	NEUTRAL	NA	3	"ADAMTSL3,GOLGA6L4,UBE2Q2L"
TCGA.DM.A1D6	15	84417315	102400036	7003	0.0209	NEUTRAL	NA	90	"ABHD2,ACAN,ADAMTS17,ADAMTSL3,AEN,AGBL1,AKAP13,ALDH1A3,ALPK3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,GOLGA6L4,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PDE8A,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEC11A,SEMA4B,SLC28A1,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UBE2Q2L,UNC45A,VIMP,VPS33B,WDR73,WDR93,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AG.A00C.01A	15	84473383	84539506	5	0.3155	NEUTRAL	NA	1	ADAMTSL3
TCGA.AG.A00C.01A	15	84553801	85147108	22	-0.3105	NEUTRAL	NA	4	"ADAMTSL3,GOLGA6L4,UBE2Q2L,ZSCAN2"
TCGA.AG.3909.01A	15	84558821	84705540	19	0.0496	NEUTRAL	NA	1	ADAMTSL3
TCGA.CK.5914.01A	15	84651036	84705540	10	0.3139	NEUTRAL	NA	1	ADAMTSL3
TCGA.AH.6549.01A	15	84683294	90969305	442	0.2622	NEUTRAL	NA	47	"ABHD2,ACAN,ADAMTSL3,AEN,AGBL1,AKAP13,ALPK3,ANPEP,AP3S2,ARPIN,C15orf38-AP3S2,CIB1,DET1,FANCI,GDPGP1,GOLGA6L4,HAPLN3,IDH2,IQGAP1,ISG20,KIF7,KLHL25,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NTRK3,PDE8A,PEX11A,PLIN1,POLG,RHCG,RLBP1,SEC11A,SEMA4B,SLC28A1,TICRR,UBE2Q2L,WDR73,WDR93,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AA.3875	15	84792082	91829617	2507	0.0287	NEUTRAL	NA	57	"ABHD2,ACAN,AEN,AGBL1,AKAP13,ALPK3,ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,GOLGA6L4,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,KLHL25,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NTRK3,PDE8A,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEC11A,SEMA4B,SLC28A1,SV2B,TICRR,UBE2Q2L,UNC45A,VPS33B,WDR73,WDR93,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AA.3560	15	84952633	102400036	6923	0.1561	NEUTRAL	NA	87	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,AKAP13,ALDH1A3,ALPK3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PDE8A,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEC11A,SEMA4B,SLC28A1,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR73,WDR93,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.CL.5918	15	85091286	102400036	6896	0.1138	NEUTRAL	NA	87	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,AKAP13,ALDH1A3,ALPK3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NMB,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PDE8A,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEC11A,SEMA4B,SLC28A1,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR73,WDR93,ZNF592,ZNF710,ZNF774,ZSCAN2"
TCGA.AA.A02K.01A	15	85159483	85213185	17	0.1485	NEUTRAL	NA	4	"NMB,SEC11A,WDR73,ZSCAN2"
TCGA.AG.4009.01A	15	85163791	85370665	27	-0.3274	NEUTRAL	NA	6	"ALPK3,NMB,SEC11A,WDR73,ZNF592,ZSCAN2"
TCGA.AA.A02K.01A	15	85213899	102462348	914	-0.0728	NEUTRAL	NA	85	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,AKAP13,ALDH1A3,ALPK3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F4,OR4F6,PCSK6,PDE8A,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEC11A,SEMA4B,SLC28A1,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF592,ZNF710,ZNF774"
TCGA.CK.5914.01A	15	85234718	85345087	10	0.0732	NEUTRAL	NA	2	"SEC11A,ZNF592"
TCGA.AG.3909.01A	15	85234718	85360060	11	0.1315	NEUTRAL	NA	3	"ALPK3,SEC11A,ZNF592"
TCGA.AG.A00C.01A	15	85234718	89021051	149	-0.1942	NEUTRAL	NA	11	"AGBL1,AKAP13,ALPK3,KLHL25,MRPL46,MRPS11,NTRK3,PDE8A,SEC11A,SLC28A1,ZNF592"
TCGA.CA.5254	15	85277485	86023537	180	-0.486	NEUTRAL	NA	5	"AKAP13,ALPK3,PDE8A,SLC28A1,ZNF592"
TCGA.AG.3906.01A	15	85325860	89169403	153	-0.0711	NEUTRAL	NA	12	"AEN,AGBL1,AKAP13,ALPK3,DET1,KLHL25,MRPL46,MRPS11,NTRK3,PDE8A,SLC28A1,ZNF592"
TCGA.AG.4009.01A	15	85382172	89021051	135	0.124	NEUTRAL	NA	9	"AGBL1,AKAP13,ALPK3,KLHL25,MRPL46,MRPS11,NTRK3,PDE8A,SLC28A1"
TCGA.CK.5914.01A	15	85411300	86273692	66	0.3553	NEUTRAL	NA	4	"AKAP13,ALPK3,PDE8A,SLC28A1"
TCGA.AG.3909.01A	15	85411300	89011162	122	-0.117	NEUTRAL	NA	9	"AGBL1,AKAP13,ALPK3,KLHL25,MRPL46,MRPS11,NTRK3,PDE8A,SLC28A1"
TCGA.AA.3517	15	85532240	86159261	165	0.223	NEUTRAL	NA	2	"AKAP13,PDE8A"
TCGA.AA.A010.01A	15	85607533	85669388	18	0.0064	NEUTRAL	NA	1	PDE8A
TCGA.AA.A00Q.01A	15	85656547	89761744	118	0.1907	NEUTRAL	NA	15	"ABHD2,ACAN,AEN,AGBL1,AKAP13,DET1,HAPLN3,ISG20,KLHL25,MFGE8,MRPL46,MRPS11,NTRK3,PDE8A,RLBP1"
TCGA.AA.3819	15	85938849	90144943	1775	-0.0038	NEUTRAL	NA	18	"ABHD2,ACAN,AEN,AGBL1,AKAP13,DET1,FANCI,HAPLN3,ISG20,KLHL25,MFGE8,MRPL46,MRPS11,NTRK3,POLG,RHCG,RLBP1,TICRR"
TCGA.CA.5254	15	86029596	102400036	6691	0.0996	NEUTRAL	NA	79	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,AKAP13,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.CI.6620	15	86128491	102400036	6650	0.023	NEUTRAL	NA	79	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,AKAP13,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.F5.6812	15	86128491	102400036	6650	-0.4309	NEUTRAL	NA	79	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,AKAP13,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.DC.6683	15	86128640	102400036	6650	0.0154	NEUTRAL	NA	79	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,AKAP13,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3517	15	86159691	102400036	6642	0.0063	NEUTRAL	NA	79	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,AKAP13,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,KLHL25,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.A010.01A	15	86205552	88524409	58	0.0553	NEUTRAL	NA	4	"AGBL1,AKAP13,KLHL25,NTRK3"
TCGA.AA.A00L.01A	15	86283389	90170159	147	0.3675	NEUTRAL	NA	18	"ABHD2,ACAN,AEN,AGBL1,AKAP13,DET1,FANCI,HAPLN3,ISG20,KLHL25,MFGE8,MRPL46,MRPS11,NTRK3,POLG,RHCG,RLBP1,TICRR"
TCGA.AA.3941	15	86657091	88468930	856	-0.1615	NEUTRAL	NA	2	"AGBL1,NTRK3"
TCGA.A6.2671	15	86660719	102400036	6408	0.0693	NEUTRAL	NA	77	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3844	15	86668479	88628773	901	-0.3219	NEUTRAL	NA	2	"AGBL1,NTRK3"
TCGA.DM.A1HA	15	86775728	87346848	305	0.0318	NEUTRAL	NA	1	AGBL1
TCGA.AA.3811	15	86778248	88436599	783	-0.3213	NEUTRAL	NA	2	"AGBL1,NTRK3"
TCGA.AA.3850	15	86820738	88436599	759	-0.41365	NEUTRAL	NA	2	"AGBL1,NTRK3"
TCGA.AG.3891.01A	15	86822832	88483807	15	-0.3823	NEUTRAL	NA	2	"AGBL1,NTRK3"
TCGA.AA.3864	15	87200465	88036358	408	-0.1925	NEUTRAL	NA	1	AGBL1
TCGA.AG.A01W.01A	15	87215572	87251389	14	-0.0992	NEUTRAL	NA	1	AGBL1
TCGA.G4.6303	15	87354668	88811329	631	-0.4173	NEUTRAL	NA	2	"AGBL1,NTRK3"
TCGA.DM.A1HA	15	87496456	102400036	5971	0	NEUTRAL	NA	77	"ABHD2,ACAN,ADAMTS17,AEN,AGBL1,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.A01W.01A	15	87535289	87591835	11	-0.0492	NEUTRAL	NA	1	AGBL1
TCGA.AG.A01W.01A	15	87657084	87671128	17	-0.2379	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	15	87672645	87967848	33	0.316	NEUTRAL	NA	0	None
TCGA.AA.3872	15	87945273	88423050	201	-0.3546	NEUTRAL	NA	1	NTRK3
TCGA.AA.3989	15	87945273	102400036	5784	0.0509	NEUTRAL	NA	76	"ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.A01W.01A	15	88013686	88435759	63	0.2009	NEUTRAL	NA	1	NTRK3
TCGA.AA.3864	15	88040399	92139578	1431	0.1407	NEUTRAL	NA	44	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NTRK3,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEMA4B,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3982	15	88069697	89079671	408	-0.2126	NEUTRAL	NA	4	"DET1,MRPL46,MRPS11,NTRK3"
TCGA.F4.6461	15	88327130	96813246	3460	-0.0174	NEUTRAL	NA	51	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf32,C15orf38-AP3S2,CHD2,CIB1,CRTC3,DET1,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MCTP2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NTRK3,PEX11A,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,ST8SIA2,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.DY.A0XA	15	88405041	94776929	2546	-0.0116	NEUTRAL	NA	50	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf32,C15orf38-AP3S2,CHD2,CIB1,CRTC3,DET1,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NTRK3,PEX11A,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,ST8SIA2,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3872	15	88428701	90393807	674	-0.0848	NEUTRAL	NA	24	"ABHD2,ACAN,AEN,ANPEP,AP3S2,C15orf38-AP3S2,DET1,FANCI,HAPLN3,ISG20,KIF7,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NTRK3,PEX11A,PLIN1,POLG,RHCG,RLBP1,TICRR,WDR93"
TCGA.A6.2686	15	88432170	102400036	5573	-0.3441	NEUTRAL	NA	76	"ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3850	15	88436616	89083313	251	0.19775	NEUTRAL	NA	4	"DET1,MRPL46,MRPS11,NTRK3"
TCGA.AA.3811	15	88436616	94048685	2246	0.1348	NEUTRAL	NA	50	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf32,C15orf38-AP3S2,CHD2,CIB1,CRTC3,DET1,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NTRK3,PEX11A,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,ST8SIA2,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.DY.A1DC	15	88498140	102400036	5528	0.1259	NEUTRAL	NA	76	"ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.3891.01A	15	88522535	89834797	98	0.032	NEUTRAL	NA	12	"ABHD2,ACAN,AEN,DET1,FANCI,HAPLN3,ISG20,MFGE8,MRPL46,MRPS11,NTRK3,RLBP1"
TCGA.AG.A01W.01A	15	88576418	88609898	13	-0.0655	NEUTRAL	NA	1	NTRK3
TCGA.AA.3844	15	88629093	93516426	1860	0.0723	NEUTRAL	NA	49	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf32,C15orf38-AP3S2,CHD2,CIB1,CRTC3,DET1,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NTRK3,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEMA4B,SLCO3A1,ST8SIA2,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3870	15	88638005	93110129	1698	0.1187	NEUTRAL	NA	47	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf32,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NTRK3,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEMA4B,SLCO3A1,ST8SIA2,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3994	15	88763152	102400036	5431	-0.0068	NEUTRAL	NA	76	"ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.CK.5914.01A	15	88799089	89056150	12	-0.2011	NEUTRAL	NA	4	"DET1,MRPL46,MRPS11,NTRK3"
TCGA.G4.6303	15	88814131	91894755	1033	-0.0934	NEUTRAL	NA	43	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEMA4B,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.A01W.01A	15	88831699	98833764	352	0.3404	NEUTRAL	NA	53	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,ARRDC4,BLM,C15orf32,C15orf38-AP3S2,CHD2,CIB1,CRTC3,DET1,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MCTP2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,PEX11A,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SPATA8,ST8SIA2,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.A02H.01A	15	89007914	92705955	413	0.3603	NEUTRAL	NA	44	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEMA4B,SLCO3A1,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.A02F.01A	15	89015811	102462347	650	0.0253	NEUTRAL	NA	75	"ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPS11,NGRN,NR2F2,OR4F15,OR4F4,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.4009.01A	15	89056150	89079453	5	-0.4633	NEUTRAL	NA	1	DET1
TCGA.AG.A00C.01A	15	89056150	89452981	39	0.1933	NEUTRAL	NA	6	"ACAN,AEN,DET1,HAPLN3,ISG20,MFGE8"
TCGA.AA.3982	15	89080973	91586579	773	0.0725	NEUTRAL	NA	40	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,NGRN,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEMA4B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.4009.01A	15	89151287	89728605	40	0.0318	NEUTRAL	NA	6	"ABHD2,ACAN,AEN,HAPLN3,ISG20,MFGE8"
TCGA.AA.A00N.01A	15	89155006	89198598	7	0.2424	NEUTRAL	NA	2	"AEN,ISG20"
TCGA.AG.3909.01A	15	89155006	89422151	27	-0.4794	NEUTRAL	NA	4	"ACAN,AEN,HAPLN3,ISG20"
TCGA.CK.5914.01A	15	89155006	89828286	67	-0.1634	NEUTRAL	NA	8	"ABHD2,ACAN,AEN,FANCI,HAPLN3,ISG20,MFGE8,RLBP1"
TCGA.AG.3906.01A	15	89172406	89392698	13	-0.4287	NEUTRAL	NA	3	"ACAN,AEN,ISG20"
TCGA.AG.3906.01A	15	89394977	89828286	50	0.0811	NEUTRAL	NA	6	"ABHD2,ACAN,FANCI,HAPLN3,MFGE8,RLBP1"
TCGA.AF.2689	15	89559615	102400036	5154	-0.0107	NEUTRAL	NA	67	"ABHD2,ADAMTS17,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HDDC3,IDH2,IGF1R,IQGAP1,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,NGRN,NR2F2,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.3909.01A	15	89659509	89734284	7	0.0128	NEUTRAL	NA	1	ABHD2
TCGA.AG.A00C.01A	15	89659509	89762148	16	-0.327	NEUTRAL	NA	2	"ABHD2,RLBP1"
TCGA.AA.A00N.01A	15	89762148	89811583	9	-0.0013	NEUTRAL	NA	2	"FANCI,RLBP1"
TCGA.EI.6511	15	89769904	102400036	5075	-0.0108	NEUTRAL	NA	65	"ADAMTS17,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HDDC3,IDH2,IGF1R,IQGAP1,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,NGRN,NR2F2,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.A00C.01A	15	89790820	91560133	353	0.1631	NEUTRAL	NA	32	"ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,FANCI,FES,FURIN,GDPGP1,HDDC3,IDH2,IQGAP1,KIF7,MAN2A2,MESP1,MESP2,NGRN,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,SEMA4B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.4009.01A	15	89801870	89817377	9	-0.1318	NEUTRAL	NA	1	FANCI
TCGA.DM.A28M.01A	15	89804769	89847024	22	-0.1397	NEUTRAL	NA	1	FANCI
TCGA.AA.A010.01A	15	89811583	89848826	20	-0.4938	NEUTRAL	NA	1	FANCI
TCGA.AA.A01Q.01A	15	89833387	89860578	18	-0.3536	NEUTRAL	NA	2	"FANCI,POLG"
TCGA.AA.A00N.01A	15	89859934	90152002	41	-0.2363	NEUTRAL	NA	4	"FANCI,POLG,RHCG,TICRR"
TCGA.AG.3891.01A	15	89859934	90176875	57	0.0684	NEUTRAL	NA	5	"FANCI,KIF7,POLG,RHCG,TICRR"
TCGA.AG.3909.01A	15	89861723	89871626	12	-0.182	NEUTRAL	NA	1	POLG
TCGA.AA.A01Q.01A	15	89861723	89873265	14	0.2614	NEUTRAL	NA	1	POLG
TCGA.AG.3906.01A	15	89861723	89873265	14	0.291	NEUTRAL	NA	1	POLG
TCGA.CK.5914.01A	15	89861723	90248726	80	-0.1444	NEUTRAL	NA	7	"KIF7,PEX11A,PLIN1,POLG,RHCG,TICRR,WDR93"
TCGA.AA.A010.01A	15	89864929	89911195	13	-0.4563	NEUTRAL	NA	1	POLG
TCGA.AA.A00Q.01A	15	89866991	90229613	52	0.1136	NEUTRAL	NA	6	"KIF7,PEX11A,PLIN1,POLG,RHCG,TICRR"
TCGA.AG.3906.01A	15	89876298	90176875	40	0.0336	NEUTRAL	NA	4	"KIF7,POLG,RHCG,TICRR"
TCGA.AA.A01Q.01A	15	89876298	90210145	35	-0.2044	NEUTRAL	NA	5	"KIF7,PLIN1,POLG,RHCG,TICRR"
TCGA.AG.4009.01A	15	90015927	90039554	10	0.3653	NEUTRAL	NA	1	RHCG
TCGA.AF.3914.01A	15	90015927	91438606	234	-0.1384	NEUTRAL	NA	24	"ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,FES,FURIN,GDPGP1,IDH2,IQGAP1,KIF7,MESP1,MESP2,NGRN,PEX11A,PLIN1,RHCG,SEMA4B,TICRR,WDR93,ZNF710,ZNF774"
TCGA.AA.3532	15	90095776	91202600	309	0.2279	NEUTRAL	NA	20	"ANPEP,AP3S2,ARPIN,C15orf38-AP3S2,CIB1,CRTC3,GDPGP1,IDH2,IQGAP1,KIF7,MESP1,MESP2,NGRN,PEX11A,PLIN1,SEMA4B,TICRR,WDR93,ZNF710,ZNF774"
TCGA.AG.4009.01A	15	90118778	90176354	29	-0.4937	NEUTRAL	NA	2	"KIF7,TICRR"
TCGA.AG.A015.01A	15	90137599	90213220	34	0.1933	NEUTRAL	NA	3	"KIF7,PLIN1,TICRR"
TCGA.AA.3819	15	90146910	90305616	33	0.345	NEUTRAL	NA	6	"KIF7,MESP1,PEX11A,PLIN1,TICRR,WDR93"
TCGA.AA.A00A.01A	15	90171600	90212700	17	0.0276	NEUTRAL	NA	2	"KIF7,PLIN1"
TCGA.AA.A00L.01A	15	90171600	90212700	18	-0.3399	NEUTRAL	NA	2	"KIF7,PLIN1"
TCGA.AA.A00N.01A	15	90171600	90771765	97	-0.2835	NEUTRAL	NA	13	"ANPEP,AP3S2,ARPIN,C15orf38-AP3S2,IDH2,KIF7,MESP1,MESP2,PEX11A,PLIN1,SEMA4B,WDR93,ZNF710"
TCGA.AG.3909.01A	15	90172575	90280777	35	-0.2937	NEUTRAL	NA	4	"KIF7,PEX11A,PLIN1,WDR93"
TCGA.AG.3906.01A	15	90210145	91358310	162	0.1201	NEUTRAL	NA	19	"ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,GDPGP1,IDH2,IQGAP1,MESP1,MESP2,NGRN,PEX11A,PLIN1,SEMA4B,WDR93,ZNF710,ZNF774"
TCGA.AG.3891.01A	15	90210786	90214678	4	-0.4564	NEUTRAL	NA	1	PLIN1
TCGA.AA.A01Q.01A	15	90210786	90293315	27	0.2335	NEUTRAL	NA	4	"MESP1,PEX11A,PLIN1,WDR93"
TCGA.AG.3891.01A	15	90216414	91560984	256	0.254	NEUTRAL	NA	27	"ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,FES,FURIN,GDPGP1,HDDC3,IDH2,IQGAP1,MAN2A2,MESP1,MESP2,NGRN,PEX11A,PLIN1,PRC1,RCCD1,SEMA4B,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.A015.01A	15	90216414	101569141	481	-0.1549	NEUTRAL	NA	52	"ADAMTS17,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CIB1,CRTC3,FAM169B,FAM174B,FES,FURIN,GDPGP1,HDDC3,IDH2,IGF1R,IQGAP1,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,NGRN,NR2F2,PEX11A,PGPEP1L,PLIN1,PRC1,RCCD1,RGMA,SEMA4B,SLCO3A1,SPATA8,ST8SIA2,SV2B,SYNM,TTC23,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.A016.01A	15	90216414	102462347	558	-0.1315	NEUTRAL	NA	61	"ADAMTS17,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,FAM169B,FAM174B,FES,FURIN,GDPGP1,HDDC3,IDH2,IGF1R,IQGAP1,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,NGRN,NR2F2,OR4F15,OR4F4,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,PRC1,RCCD1,RGMA,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.4009.01A	15	90227011	90276187	14	0.0023	NEUTRAL	NA	2	"PEX11A,WDR93"
TCGA.AA.A010.01A	15	90233758	90437051	40	-0.4498	NEUTRAL	NA	7	"ANPEP,AP3S2,C15orf38-AP3S2,MESP1,MESP2,PEX11A,WDR93"
TCGA.CK.5914.01A	15	90278676	90321285	8	-0.0347	NEUTRAL	NA	3	"MESP1,MESP2,WDR93"
TCGA.AG.4009.01A	15	90278676	90814379	69	-0.3209	NEUTRAL	NA	13	"ANPEP,AP3S2,ARPIN,C15orf38-AP3S2,CIB1,GDPGP1,IDH2,MESP1,MESP2,NGRN,SEMA4B,WDR93,ZNF710"
TCGA.AA.3819	15	90313056	102400036	4930	-0.0015	NEUTRAL	NA	56	"ADAMTS17,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,FAM169B,FAM174B,FES,FURIN,GDPGP1,HDDC3,IDH2,IGF1R,IQGAP1,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP2,NGRN,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,PRC1,RCCD1,RGMA,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TM2D3,TTC23,UNC45A,VIMP,VPS33B,ZNF710,ZNF774"
TCGA.AA.A01Q.01A	15	90328529	90801948	52	-0.3673	NEUTRAL	NA	9	"ANPEP,AP3S2,ARPIN,C15orf38-AP3S2,CIB1,GDPGP1,IDH2,SEMA4B,ZNF710"
TCGA.AA.A010.01A	15	90444931	91030669	79	0.0501	NEUTRAL	NA	10	"ARPIN,C15orf38-AP3S2,CIB1,GDPGP1,IDH2,IQGAP1,NGRN,SEMA4B,ZNF710,ZNF774"
TCGA.AA.A00Q.01A	15	90610322	90630316	8	0.0164	NEUTRAL	NA	2	"IDH2,ZNF710"
TCGA.CI.6623	15	90756121	102400036	4798	-0.0332	NEUTRAL	NA	49	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,BLM,C15orf32,CERS3,CHD2,CHSY1,CIB1,CRTC3,FAM169B,FAM174B,FES,FURIN,GDPGP1,HDDC3,IGF1R,IQGAP1,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,NGRN,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,PRC1,RCCD1,RGMA,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TM2D3,TTC23,UNC45A,VIMP,VPS33B,ZNF774"
TCGA.AA.A01Q.01A	15	90808893	91354396	74	0.2254	NEUTRAL	NA	5	"BLM,CRTC3,IQGAP1,NGRN,ZNF774"
TCGA.AG.4009.01A	15	90897845	91358310	72	0.0562	NEUTRAL	NA	4	"BLM,CRTC3,IQGAP1,ZNF774"
TCGA.AG.3909.01A	15	90969305	91027410	25	-0.1679	NEUTRAL	NA	1	IQGAP1
TCGA.AH.6549.01A	15	90972808	102462347	503	-0.023	NEUTRAL	NA	45	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,BLM,C15orf32,CERS3,CHD2,CHSY1,CRTC3,FAM169B,FAM174B,FES,FURIN,HDDC3,IGF1R,IQGAP1,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,NR2F2,OR4F15,OR4F4,OR4F6,PCSK6,PGPEP1L,PRC1,RCCD1,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TM2D3,TTC23,UNC45A,VIMP,VPS33B"
TCGA.AA.A00N.01A	15	91030669	91185115	20	-0.1848	NEUTRAL	NA	2	"CRTC3,IQGAP1"
TCGA.CK.5914.01A	15	91037896	91347355	34	-0.0558	NEUTRAL	NA	3	"BLM,CRTC3,IQGAP1"
TCGA.AA.3532	15	91202664	102400036	4663	-0.2403	NEUTRAL	NA	42	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,BLM,C15orf32,CERS3,CHD2,CHSY1,FAM169B,FAM174B,FES,FURIN,HDDC3,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,PRC1,RCCD1,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TM2D3,TTC23,UNC45A,VIMP,VPS33B"
TCGA.AG.3909.01A	15	91292610	91341391	15	-0.164	NEUTRAL	NA	1	BLM
TCGA.AA.A010.01A	15	91337356	91358310	7	0.0291	NEUTRAL	NA	1	BLM
TCGA.AM.5820	15	91352926	91508802	49	0.2967	NEUTRAL	NA	7	"BLM,FES,FURIN,HDDC3,MAN2A2,RCCD1,UNC45A"
TCGA.AA.A00Q.01A	15	91354396	102462347	347	0.3433	NEUTRAL	NA	43	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,BLM,C15orf32,CERS3,CHD2,CHSY1,FAM169B,FAM174B,FES,FURIN,HDDC3,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,NR2F2,OR4F15,OR4F4,OR4F6,PCSK6,PGPEP1L,PRC1,RCCD1,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TM2D3,TTC23,UNC45A,VIMP,VPS33B"
TCGA.AA.A01Q.01A	15	91358310	91544577	89	-0.3941	NEUTRAL	NA	9	"BLM,FES,FURIN,HDDC3,MAN2A2,PRC1,RCCD1,UNC45A,VPS33B"
TCGA.AA.3872	15	91418296	94361808	1419	-0.1689	NEUTRAL	NA	15	"C15orf32,CHD2,FAM174B,FES,FURIN,HDDC3,MAN2A2,PRC1,RCCD1,RGMA,SLCO3A1,ST8SIA2,SV2B,UNC45A,VPS33B"
TCGA.AA.A00A.01A	15	91418954	91493680	53	0.1666	NEUTRAL	NA	5	"FES,FURIN,HDDC3,MAN2A2,UNC45A"
TCGA.AG.3909.01A	15	91419458	91436327	18	-0.1453	NEUTRAL	NA	2	"FES,FURIN"
TCGA.AH.6643	15	91441206	91671190	96	-0.2943	NEUTRAL	NA	7	"HDDC3,MAN2A2,PRC1,RCCD1,SV2B,UNC45A,VPS33B"
TCGA.AF.3914.01A	15	91449094	95022138	173	0.0196	NEUTRAL	NA	14	"C15orf32,CHD2,FAM174B,HDDC3,MAN2A2,MCTP2,PRC1,RCCD1,RGMA,SLCO3A1,ST8SIA2,SV2B,UNC45A,VPS33B"
TCGA.AG.4009.01A	15	91455725	91491341	21	-0.0997	NEUTRAL	NA	3	"HDDC3,MAN2A2,UNC45A"
TCGA.AG.3906.01A	15	91459302	92459174	75	0.2583	NEUTRAL	NA	8	"HDDC3,MAN2A2,PRC1,RCCD1,SLCO3A1,SV2B,UNC45A,VPS33B"
TCGA.AA.A010.01A	15	91475213	91478776	3	0.2371	NEUTRAL	NA	2	"HDDC3,UNC45A"
TCGA.AM.5820	15	91509591	102400036	4575	0.0192	NEUTRAL	NA	35	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,C15orf32,CERS3,CHD2,CHSY1,FAM169B,FAM174B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,PRC1,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TM2D3,TTC23,VIMP,VPS33B"
TCGA.A6.3808.01A	15	91512628	101043829	245	0.3219	NEUTRAL	NA	23	"ADAMTS17,ARRDC4,C15orf32,CERS3,CHD2,FAM169B,FAM174B,IGF1R,LRRC28,LYSMD4,MCTP2,MEF2A,NR2F2,PGPEP1L,PRC1,RGMA,SLCO3A1,SPATA8,ST8SIA2,SV2B,SYNM,TTC23,VPS33B"
TCGA.AG.3909.01A	15	91537545	91560984	21	-0.3771	NEUTRAL	NA	2	"PRC1,VPS33B"
TCGA.CK.5914.01A	15	91537545	91560984	21	-0.3914	NEUTRAL	NA	2	"PRC1,VPS33B"
TCGA.AA.A010.01A	15	91537545	91809774	28	-0.0645	NEUTRAL	NA	3	"PRC1,SV2B,VPS33B"
TCGA.AG.4009.01A	15	91542158	95022138	112	-0.012	NEUTRAL	NA	9	"C15orf32,CHD2,FAM174B,MCTP2,RGMA,SLCO3A1,ST8SIA2,SV2B,VPS33B"
TCGA.AA.A01Q.01A	15	91545239	98504052	117	0.2039	NEUTRAL	NA	12	"ARRDC4,C15orf32,CHD2,FAM174B,MCTP2,NR2F2,RGMA,SLCO3A1,SPATA8,ST8SIA2,SV2B,VPS33B"
TCGA.AG.A00C.01A	15	91560984	95022138	94	-0.2078	NEUTRAL	NA	9	"C15orf32,CHD2,FAM174B,MCTP2,RGMA,SLCO3A1,ST8SIA2,SV2B,VPS33B"
TCGA.AA.A00D.01A	15	91565330	92937258	23	-0.3589	NEUTRAL	NA	4	"SLCO3A1,ST8SIA2,SV2B,VPS33B"
TCGA.AG.3909.01A	15	91565330	93015351	28	0.0453	NEUTRAL	NA	5	"C15orf32,SLCO3A1,ST8SIA2,SV2B,VPS33B"
TCGA.AG.3891.01A	15	91565330	95022138	95	-0.0979	NEUTRAL	NA	9	"C15orf32,CHD2,FAM174B,MCTP2,RGMA,SLCO3A1,ST8SIA2,SV2B,VPS33B"
TCGA.CK.5914.01A	15	91565330	95022138	99	0.1981	NEUTRAL	NA	9	"C15orf32,CHD2,FAM174B,MCTP2,RGMA,SLCO3A1,ST8SIA2,SV2B,VPS33B"
TCGA.AA.3982	15	91588546	91849013	138	-0.1657	NEUTRAL	NA	1	SV2B
TCGA.AA.3850	15	91631300	91849013	112	0.14365	NEUTRAL	NA	1	SV2B
TCGA.AA.3941	15	91687158	91863317	101	0.3488	NEUTRAL	NA	1	SV2B
TCGA.AA.A00A.01A	15	91795018	92937258	21	0.2009	NEUTRAL	NA	3	"SLCO3A1,ST8SIA2,SV2B"
TCGA.AA.A00L.01A	15	91832704	92937258	13	0.1213	NEUTRAL	NA	3	"SLCO3A1,ST8SIA2,SV2B"
TCGA.AA.3930.01A	15	91832704	102462347	318	-0.0087	NEUTRAL	NA	34	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,C15orf32,CERS3,CHD2,CHSY1,FAM169B,FAM174B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F4,OR4F6,PCSK6,PGPEP1L,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3850	15	91849171	92262759	162	-0.14185	NEUTRAL	NA	0	None
TCGA.AA.3875	15	91863296	102400036	4419	-0.0062	NEUTRAL	NA	32	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,C15orf32,CERS3,CHD2,CHSY1,FAM169B,FAM174B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3982	15	91871203	91950748	39	-0.1825	NEUTRAL	NA	0	None
TCGA.AA.3941	15	91871203	92135417	102	0.2572	NEUTRAL	NA	0	None
TCGA.DM.A288	15	91876226	102400036	4397	0.0433	NEUTRAL	NA	32	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,C15orf32,CERS3,CHD2,CHSY1,FAM169B,FAM174B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.G4.6303	15	91895075	102400036	4397	-0.397	NEUTRAL	NA	32	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,C15orf32,CERS3,CHD2,CHSY1,FAM169B,FAM174B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3982	15	91966203	92041863	21	-0.071	NEUTRAL	NA	0	None
TCGA.AA.3982	15	92058728	92089217	14	-0.3556	NEUTRAL	NA	0	None
TCGA.AH.6643	15	92083294	102400036	4326	-0.2631	NEUTRAL	NA	32	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,C15orf32,CERS3,CHD2,CHSY1,FAM169B,FAM174B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,RGMA,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3982	15	92094728	92135417	20	0.1351	NEUTRAL	NA	0	None
TCGA.AA.3982	15	92151160	93980095	921	-0.0461	NEUTRAL	NA	6	"C15orf32,CHD2,FAM174B,RGMA,SLCO3A1,ST8SIA2"
TCGA.AA.3864	15	92151160	94361808	1101	0.0986	NEUTRAL	NA	6	"C15orf32,CHD2,FAM174B,RGMA,SLCO3A1,ST8SIA2"
TCGA.AA.3850	15	92274796	92719831	227	0.29695	NEUTRAL	NA	1	SLCO3A1
TCGA.AG.3906.01A	15	92638059	95022138	80	-0.1174	NEUTRAL	NA	7	"C15orf32,CHD2,FAM174B,MCTP2,RGMA,SLCO3A1,ST8SIA2"
TCGA.AA.3850	15	92720599	92788872	46	-0.23025	NEUTRAL	NA	0	None
TCGA.AA.3941	15	92730537	92742010	10	-0.2377	NEUTRAL	NA	0	None
TCGA.AA.3941	15	92767076	92771919	10	-0.4	NEUTRAL	NA	0	None
TCGA.AA.3850	15	92789317	94048685	652	0.26725	NEUTRAL	NA	5	"C15orf32,CHD2,FAM174B,RGMA,ST8SIA2"
TCGA.AA.A02H.01A	15	92973234	93492132	21	-0.0516	NEUTRAL	NA	4	"C15orf32,CHD2,FAM174B,ST8SIA2"
TCGA.AA.A00D.01A	15	92973234	93563195	44	0.1766	NEUTRAL	NA	4	"C15orf32,CHD2,FAM174B,ST8SIA2"
TCGA.AG.3909.01A	15	93016131	100537551	148	-0.5057	NEUTRAL	NA	17	"ADAMTS17,ARRDC4,C15orf32,CHD2,FAM169B,FAM174B,IGF1R,LRRC28,LYSMD4,MCTP2,MEF2A,NR2F2,PGPEP1L,RGMA,SPATA8,SYNM,TTC23"
TCGA.AA.A010.01A	15	93043511	95022138	67	0.0831	NEUTRAL	NA	5	"C15orf32,CHD2,FAM174B,MCTP2,RGMA"
TCGA.AA.3870	15	93111804	94361808	607	0.083	NEUTRAL	NA	3	"CHD2,FAM174B,RGMA"
TCGA.AA.A01Z	15	93454381	99186978	2365	-0.0149	NEUTRAL	NA	7	"ARRDC4,CHD2,FAM169B,MCTP2,NR2F2,RGMA,SPATA8"
TCGA.AA.3941	15	93499384	93526002	6	-0.4808	NEUTRAL	NA	1	CHD2
TCGA.AA.3844	15	93530414	93978413	267	0.137	NEUTRAL	NA	2	"CHD2,RGMA"
TCGA.AA.A02H.01A	15	93540185	99442656	57	0.001	NEUTRAL	NA	8	"ARRDC4,CHD2,FAM169B,IGF1R,MCTP2,NR2F2,RGMA,SPATA8"
TCGA.CM.4752	15	93576981	102400036	3634	-0.3347	NEUTRAL	NA	27	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,RGMA,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3844	15	93978890	98516751	1798	-0.2862	NEUTRAL	NA	4	"ARRDC4,MCTP2,NR2F2,SPATA8"
TCGA.AA.3982	15	93986588	98599760	1801	-0.3874	NEUTRAL	NA	4	"ARRDC4,MCTP2,NR2F2,SPATA8"
TCGA.AA.3850	15	94054391	95664777	662	-0.13195	NEUTRAL	NA	1	MCTP2
TCGA.AA.3811	15	94054391	98033767	1542	-0.2062	NEUTRAL	NA	3	"MCTP2,NR2F2,SPATA8"
TCGA.AA.3941	15	94111716	96140572	849	0.0723	NEUTRAL	NA	1	MCTP2
TCGA.AA.3977	15	94365843	96143558	740	-0.0275	NEUTRAL	NA	1	MCTP2
TCGA.AA.3870	15	94365843	102400036	3192	0.0331	NEUTRAL	NA	26	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3872	15	94365843	102400036	3193	-0.233	NEUTRAL	NA	26	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3867	15	94368496	100389550	2316	-0.1699	NEUTRAL	NA	12	"ARRDC4,FAM169B,IGF1R,LRRC28,LYSMD4,MCTP2,MEF2A,NR2F2,PGPEP1L,SPATA8,SYNM,TTC23"
TCGA.AA.3864	15	94368496	102400036	3188	0.0337	NEUTRAL	NA	26	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.F4.6808	15	94493227	102400036	3152	0.2562	NEUTRAL	NA	26	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.CM.6675	15	94664198	102400036	3075	-0.005	NEUTRAL	NA	26	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.DY.A0XA	15	94827884	95445106	287	-0.0267	NEUTRAL	NA	1	MCTP2
TCGA.AA.A00D.01A	15	94841536	100942869	102	-0.0652	NEUTRAL	NA	14	"ADAMTS17,ARRDC4,CERS3,FAM169B,IGF1R,LRRC28,LYSMD4,MCTP2,MEF2A,NR2F2,PGPEP1L,SPATA8,SYNM,TTC23"
TCGA.G4.6322	15	95412778	96049675	242	-0.4529	NEUTRAL	NA	0	None
TCGA.AA.3850	15	95689068	96017443	131	-0.24745	NEUTRAL	NA	0	None
TCGA.AA.3681	15	95905163	95925097	10	-0.0055	NEUTRAL	NA	0	None
TCGA.AA.3850	15	96031559	96176301	72	-0.42305	NEUTRAL	NA	0	None
TCGA.DY.A0XA	15	96071820	97146882	448	-0.0607	NEUTRAL	NA	1	NR2F2
TCGA.AA.3941	15	96150589	97392990	474	0.2596	NEUTRAL	NA	2	"NR2F2,SPATA8"
TCGA.AA.3977	15	96155530	102400036	2444	0.0456	NEUTRAL	NA	25	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3956	15	96156367	98033767	664	-0.0572	NEUTRAL	NA	2	"NR2F2,SPATA8"
TCGA.AA.3850	15	96179022	96228257	31	0.16775	NEUTRAL	NA	0	None
TCGA.AA.3850	15	96269312	97172251	357	0.03465	NEUTRAL	NA	1	NR2F2
TCGA.F4.6461	15	96816025	97637471	268	-0.4813	NEUTRAL	NA	2	"NR2F2,SPATA8"
TCGA.AG.A00C.01A	15	96869460	98513790	13	0.2705	NEUTRAL	NA	3	"ARRDC4,NR2F2,SPATA8"
TCGA.CK.5914.01A	15	96869460	100514575	83	-0.2918	NEUTRAL	NA	12	"ADAMTS17,ARRDC4,FAM169B,IGF1R,LRRC28,LYSMD4,MEF2A,NR2F2,PGPEP1L,SPATA8,SYNM,TTC23"
TCGA.G4.6322	15	96992994	97852009	256	-0.4562	NEUTRAL	NA	1	SPATA8
TCGA.AA.3850	15	97188056	97257324	15	-0.46765	NEUTRAL	NA	0	None
TCGA.AA.3850	15	97259984	97404046	58	0.08895	NEUTRAL	NA	1	SPATA8
TCGA.AG.3906.01A	15	97326834	101188501	112	-0.0892	NEUTRAL	NA	14	"ADAMTS17,ARRDC4,ASB7,CERS3,FAM169B,IGF1R,LINS,LRRC28,LYSMD4,MEF2A,PGPEP1L,SPATA8,SYNM,TTC23"
TCGA.AF.3914.01A	15	97326834	102462347	217	0.0169	NEUTRAL	NA	25	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F4,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AG.3891.01A	15	97326834	102462347	216	-0.084	NEUTRAL	NA	25	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F4,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3941	15	97393882	97992681	179	-0.0277	NEUTRAL	NA	0	None
TCGA.AA.3850	15	97404192	98617240	402	-0.39985	NEUTRAL	NA	1	ARRDC4
TCGA.DY.A0XA	15	97515297	102400036	1933	-0.0222	NEUTRAL	NA	23	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AG.3883	15	97587546	102400036	1902	-0.315	NEUTRAL	NA	23	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.F4.6461	15	97643333	102400036	1873	-0.0056	NEUTRAL	NA	23	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.G4.6322	15	97853441	102400036	1833	-0.0208	NEUTRAL	NA	23	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3811	15	98044495	98394437	144	-0.2722	NEUTRAL	NA	0	None
TCGA.AA.3956	15	98075719	102400036	1770	0.0567	NEUTRAL	NA	23	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3941	15	98116930	98255915	53	-0.0615	NEUTRAL	NA	0	None
TCGA.AA.3941	15	98267327	98701021	181	0.154	NEUTRAL	NA	1	ARRDC4
TCGA.A6.A56B	15	98296740	99396693	451	-0.017	NEUTRAL	NA	3	"ARRDC4,FAM169B,IGF1R"
TCGA.AA.3811	15	98400379	102400036	1629	0.13	NEUTRAL	NA	23	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.A01Q.01A	15	98508767	99679535	34	-0.1862	NEUTRAL	NA	6	"ARRDC4,FAM169B,IGF1R,PGPEP1L,SYNM,TTC23"
TCGA.AG.A00C.01A	15	98514293	101041830	94	-0.1796	NEUTRAL	NA	11	"ADAMTS17,ARRDC4,CERS3,FAM169B,IGF1R,LRRC28,LYSMD4,MEF2A,PGPEP1L,SYNM,TTC23"
TCGA.AA.3844	15	98520675	102400036	1584	0.0503	NEUTRAL	NA	22	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3982	15	98607815	102400036	1570	-0.0408	NEUTRAL	NA	22	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.3850	15	98621447	98779000	89	0.16515	NEUTRAL	NA	0	None
TCGA.AA.3850	15	98795669	100319297	570	0.29525	NEUTRAL	NA	8	"FAM169B,IGF1R,LRRC28,LYSMD4,MEF2A,PGPEP1L,SYNM,TTC23"
TCGA.AG.4009.01A	15	98982812	100271944	65	-0.0658	NEUTRAL	NA	8	"FAM169B,IGF1R,LRRC28,LYSMD4,MEF2A,PGPEP1L,SYNM,TTC23"
TCGA.AA.A010.01A	15	98982812	101188501	108	0.2915	NEUTRAL	NA	12	"ADAMTS17,ASB7,CERS3,FAM169B,IGF1R,LINS,LRRC28,LYSMD4,MEF2A,PGPEP1L,SYNM,TTC23"
TCGA.D5.6923	15	99023967	102400036	1364	-0.0246	NEUTRAL	NA	22	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AG.A01W.01A	15	99341215	99372992	8	0.203	NEUTRAL	NA	1	IGF1R
TCGA.A6.A56B	15	99398707	99904270	207	-0.4068	NEUTRAL	NA	5	"IGF1R,LRRC28,PGPEP1L,SYNM,TTC23"
TCGA.AA.A02H.01A	15	99465330	102462347	184	-0.1208	NEUTRAL	NA	22	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F4,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.A00A.01A	15	99491751	99671675	5	-0.1986	NEUTRAL	NA	3	"IGF1R,PGPEP1L,SYNM"
TCGA.AG.A01W.01A	15	99535096	100279871	63	0.3563	NEUTRAL	NA	6	"LRRC28,LYSMD4,MEF2A,PGPEP1L,SYNM,TTC23"
TCGA.AG.A02X.01A	15	99666864	102462347	170	-0.4123	NEUTRAL	NA	20	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.A01Q.01A	15	99696303	101169603	59	0.1718	NEUTRAL	NA	8	"ADAMTS17,ASB7,CERS3,LINS,LRRC28,LYSMD4,MEF2A,TTC23"
TCGA.DY.A1DG	15	100395540	102400036	876	0.3078	NEUTRAL	NA	14	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.3867	15	100401124	102400036	870	-0.0299	NEUTRAL	NA	14	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.3850	15	100424604	102319741	852	0.33695	NEUTRAL	NA	12	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.CK.5914.01A	15	100516203	101120416	37	0.2897	NEUTRAL	NA	3	"ADAMTS17,CERS3,LINS"
TCGA.NH.A8F7	15	100544428	102400036	815	-0.0052	NEUTRAL	NA	14	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AG.3909.01A	15	100589015	100801653	13	0.1342	NEUTRAL	NA	1	ADAMTS17
TCGA.A6.A56B	15	100650940	101332972	325	-0.0277	NEUTRAL	NA	4	"ADAMTS17,ASB7,CERS3,LINS"
TCGA.AG.4009.01A	15	100673381	101041830	19	0.0067	NEUTRAL	NA	2	"ADAMTS17,CERS3"
TCGA.AG.3909.01A	15	100802498	101043829	14	-0.3648	NEUTRAL	NA	2	"ADAMTS17,CERS3"
TCGA.AG.4021	15	100980993	102400036	598	-0.0019	NEUTRAL	NA	13	"ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.A00D.01A	15	100996056	102263253	67	0.2484	NEUTRAL	NA	11	"ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.3509.01A	15	101041830	102462347	122	-0.1342	NEUTRAL	NA	14	"ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.3869	15	101050526	102400036	550	-0.0562	NEUTRAL	NA	13	"ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AG.4009.01A	15	101109426	101188501	9	-0.4223	NEUTRAL	NA	2	"ASB7,LINS"
TCGA.AG.A00C.01A	15	101109426	101775330	54	0.1044	NEUTRAL	NA	5	"ALDH1A3,ASB7,CHSY1,LINS,LRRK1"
TCGA.A6.3808.01A	15	101109426	102462347	120	-0.3914	NEUTRAL	NA	13	"ALDH1A3,ASB7,CHSY1,LINS,LRRK1,OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.3941	15	101120962	101134296	10	-0.214	NEUTRAL	NA	1	LINS
TCGA.AG.3611.01A	15	101169603	102462347	57	-0.286	NEUTRAL	NA	12	"ALDH1A3,ASB7,CHSY1,LRRK1,OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.A6.A56B	15	101363268	102400036	428	-0.5142	NEUTRAL	NA	10	"ALDH1A3,CHSY1,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.D5.6539	15	101363268	102400036	431	0.2091	NEUTRAL	NA	10	"ALDH1A3,CHSY1,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AG.A01N.01A	15	101434112	102462347	97	-0.4086	NEUTRAL	NA	11	"ALDH1A3,CHSY1,LRRK1,OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.A00N.01A	15	101513967	101569141	17	0.2893	NEUTRAL	NA	1	LRRK1
TCGA.AG.3906.01A	15	101523683	101983731	65	-0.1894	NEUTRAL	NA	5	"CHSY1,LRRK1,PCSK6,SNRPA1,VIMP"
TCGA.AG.4009.01A	15	101549015	101586186	14	0.0739	NEUTRAL	NA	1	LRRK1
TCGA.AA.3666	15	101559135	102400036	343	-0.0233	NEUTRAL	NA	9	"CHSY1,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AG.4009.01A	15	101588647	101853365	30	-0.38	NEUTRAL	NA	5	"CHSY1,LRRK1,PCSK6,SNRPA1,VIMP"
TCGA.AA.A01Q.01A	15	101605565	102201874	28	-0.3343	NEUTRAL	NA	7	"CHSY1,LRRK1,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.A6.6141	15	101715447	102400036	273	-0.02	NEUTRAL	NA	8	"CHSY1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AG.A015.01A	15	101717584	102462347	58	-0.1784	NEUTRAL	NA	9	"CHSY1,OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.A010.01A	15	101833233	102462347	51	0.2976	NEUTRAL	NA	7	"OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3"
TCGA.AG.A00C.01A	15	101833233	102462347	47	0.0243	NEUTRAL	NA	7	"OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3"
TCGA.AA.A00N.01A	15	101835251	102182631	24	-0.0415	NEUTRAL	NA	3	"PCSK6,SNRPA1,TM2D3"
TCGA.CK.5914.01A	15	101835251	102462347	49	-0.4659	NEUTRAL	NA	7	"OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3"
TCGA.AG.3909.01A	15	101845421	101866530	7	0.09	NEUTRAL	NA	1	PCSK6
TCGA.AG.4009.01A	15	101862669	102462347	41	-0.014	NEUTRAL	NA	6	"OR4F15,OR4F4,OR4F6,PCSK6,TARSL2,TM2D3"
TCGA.AA.3531	15	101929824	102400036	179	0.0143	NEUTRAL	NA	5	"OR4F15,OR4F6,PCSK6,TARSL2,TM2D3"
TCGA.AA.A00N.01A	15	102211642	102245817	8	-0.3448	NEUTRAL	NA	1	TARSL2
TCGA.AA.A01Q.01A	15	102211642	102462347	16	0.1156	NEUTRAL	NA	4	"OR4F15,OR4F4,OR4F6,TARSL2"
TCGA.AG.3909.01A	15	102264267	102462347	4	-0.1516	NEUTRAL	NA	4	"OR4F15,OR4F4,OR4F6,TARSL2"
TCGA.AA.3941	15	102334856	102400036	16	-0.2108	NEUTRAL	NA	2	"OR4F15,OR4F6"
TCGA.CK.4952.01A	16	4374	88669717	6839	-0.0966	NEUTRAL	NA	766	Too-Many
TCGA.DC.6160.01A	16	4374	88669717	6839	-0.0062	NEUTRAL	NA	766	Too-Many
TCGA.F5.6811.01A	16	7555	1359956	380	-0.3341	NEUTRAL	NA	56	"ARHGDIG,AXIN1,C16orf13,C1QTNF8,CACNA1H,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SSTR5,STUB1,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,UBE2I,WDR24,WDR90,WFIKKN1"
TCGA.AG.A01W.01A	16	37384	538958	109	0.2203	NEUTRAL	NA	21	"ARHGDIG,AXIN1,DECR2,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,MRPL28,NME4,NPRL3,PDIA2,POLR3K,RAB11FIP3,RGS11,RHBDF1,SNRNP25,TMEM8A"
TCGA.AG.A036.01A	16	37384	88669706	6674	0.2006	NEUTRAL	NA	766	Too-Many
TCGA.A6.3810.01A	16	64374	74198	6	0.3279	NEUTRAL	NA	0	None
TCGA.AA.A00N.01A	16	64374	74198	6	-0.1132	NEUTRAL	NA	0	None
TCGA.AA.3509.01A	16	64374	1877234	549	-0.1518	NEUTRAL	NA	78	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAHD1,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGH,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,METRN,MPG,MRPL28,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NPRL3,NUBP2,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.AZ.4684.01A	16	64374	1877234	549	-0.0804	NEUTRAL	NA	78	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAHD1,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGH,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,METRN,MPG,MRPL28,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NPRL3,NUBP2,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.CK.5914.01A	16	64374	4492966	1139	-0.2746	NEUTRAL	NA	167	Too-Many
TCGA.DM.A28M.01A	16	64374	14935140	1680	-0.1488	NEUTRAL	NA	230	Too-Many
TCGA.CK.4948.01B	16	64374	19191666	2018	0.0742	NEUTRAL	NA	255	Too-Many
TCGA.CM.6165.01A	16	64374	71969214	5622	-0.1079	NEUTRAL	NA	667	Too-Many
TCGA.AH.6549.01A	16	64374	90142216	6793	-0.0131	NEUTRAL	NA	806	Too-Many
TCGA.AY.A54L.01A	16	64374	90142216	6820	0.1527	NEUTRAL	NA	806	Too-Many
TCGA.CM.4744.01A	16	64374	90142216	6840	0.1899	NEUTRAL	NA	806	Too-Many
TCGA.DM.A282.01A	16	64374	90142216	6816	7.00E-04	NEUTRAL	NA	806	Too-Many
TCGA.CM.4750.01A	16	67555	90142216	6835	0.1706	NEUTRAL	NA	806	Too-Many
TCGA.AA.3861.01A	16	72880	188111	35	-0.1458	NEUTRAL	NA	5	"MPG,NPRL3,POLR3K,RHBDF1,SNRNP25"
TCGA.AA.3939.01A	16	72880	541084	116	-0.0528	NEUTRAL	NA	21	"ARHGDIG,AXIN1,DECR2,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,MRPL28,NME4,NPRL3,PDIA2,POLR3K,RAB11FIP3,RGS11,RHBDF1,SNRNP25,TMEM8A"
TCGA.AA.3815.01A	16	72880	90142216	6295	0.0328	NEUTRAL	NA	806	Too-Many
TCGA.AA.3980.01A	16	72880	90142216	6590	0.1317	NEUTRAL	NA	806	Too-Many
TCGA.AA.3862.01A	16	74198	148126	24	0.1922	NEUTRAL	NA	5	"MPG,NPRL3,POLR3K,RHBDF1,SNRNP25"
TCGA.F4.6459	16	91009	361872	61	-0.0593	NEUTRAL	NA	16	"ARHGDIG,AXIN1,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,NPRL3,PDIA2,POLR3K,RGS11,RHBDF1,SNRNP25"
TCGA.D5.5541	16	91009	731724	109	-0.1304	NEUTRAL	NA	34	"ARHGDIG,AXIN1,C16orf13,CAPN15,DECR2,FAM195A,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LUC7L,MPG,MRPL28,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,SNRNP25,STUB1,TMEM8A,WDR90,WFIKKN1"
TCGA.F5.6465	16	91009	731770	110	-0.0631	NEUTRAL	NA	34	"ARHGDIG,AXIN1,C16orf13,CAPN15,DECR2,FAM195A,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LUC7L,MPG,MRPL28,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,SNRNP25,STUB1,TMEM8A,WDR90,WFIKKN1"
TCGA.CK.6747	16	91009	1007762	147	-0.0601	NEUTRAL	NA	47	"ARHGDIG,AXIN1,C16orf13,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.CM.6170	16	91009	1007762	148	-0.1016	NEUTRAL	NA	47	"ARHGDIG,AXIN1,C16orf13,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.5M.AATE	16	91009	1073514	155	0.1385	NEUTRAL	NA	48	"ARHGDIG,AXIN1,C16orf13,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.AG.A01Y	16	91009	1073514	155	-0.1799	NEUTRAL	NA	48	"ARHGDIG,AXIN1,C16orf13,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.5M.AAT4	16	91009	1252598	175	-0.1301	NEUTRAL	NA	51	"ARHGDIG,AXIN1,C16orf13,C1QTNF8,CACNA1H,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SSTR5,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.AG.4008	16	91009	1852774	270	0.0412	NEUTRAL	NA	76	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,METRN,MPG,MRPL28,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NPRL3,NUBP2,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.5M.AAT5	16	91009	1889820	280	0.0441	NEUTRAL	NA	79	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAHD1,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGH,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,MEIOB,METRN,MPG,MRPL28,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NPRL3,NUBP2,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.AA.3952	16	91009	1919450	297	-0.4991	NEUTRAL	NA	79	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAHD1,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGH,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,MEIOB,METRN,MPG,MRPL28,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NPRL3,NUBP2,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.AA.3966	16	91009	2368168	352	-0.1224	NEUTRAL	NA	106	Too-Many
TCGA.AA.3488	16	91009	2415929	362	0.2186	NEUTRAL	NA	106	Too-Many
TCGA.G4.6626	16	91009	3115627	456	-0.4245	NEUTRAL	NA	136	Too-Many
TCGA.AG.3612	16	91009	3205394	468	-0.1462	NEUTRAL	NA	139	Too-Many
TCGA.AA.3697	16	91009	3556483	583	0.3269	NEUTRAL	NA	153	Too-Many
TCGA.AA.3666	16	91009	3575269	587	-0.1847	NEUTRAL	NA	153	Too-Many
TCGA.T9.A92H	16	91009	5122783	1012	-0.3471	NEUTRAL	NA	187	Too-Many
TCGA.AA.3560	16	91009	5255873	1039	0.1139	NEUTRAL	NA	188	Too-Many
TCGA.AF.2692	16	91009	5264785	1041	-0.388	NEUTRAL	NA	188	Too-Many
TCGA.DM.A1D8	16	91009	5311538	1059	-0.0157	NEUTRAL	NA	188	Too-Many
TCGA.AG.3592	16	91009	5355666	1067	-0.0981	NEUTRAL	NA	188	Too-Many
TCGA.AG.3896	16	91009	5355666	1064	0.1593	NEUTRAL	NA	188	Too-Many
TCGA.D5.6535	16	91009	5360633	1068	0.251	NEUTRAL	NA	188	Too-Many
TCGA.AG.3726	16	91009	5378784	1082	0.0554	NEUTRAL	NA	188	Too-Many
TCGA.DM.A1D0	16	91009	5441124	1104	0.0521	NEUTRAL	NA	188	Too-Many
TCGA.DY.A1DF	16	91009	5446205	1120	-0.0374	NEUTRAL	NA	188	Too-Many
TCGA.A6.6140	16	91009	5454822	1122	0.1971	NEUTRAL	NA	188	Too-Many
TCGA.F4.6809	16	91009	5463912	1125	0.3305	NEUTRAL	NA	188	Too-Many
TCGA.AG.A026	16	91009	5506408	1148	-0.0785	NEUTRAL	NA	188	Too-Many
TCGA.AA.3968	16	91009	5509479	1149	0.0883	NEUTRAL	NA	188	Too-Many
TCGA.AZ.4681	16	91009	5571747	1189	0.0598	NEUTRAL	NA	188	Too-Many
TCGA.A6.3807	16	91009	5588528	1205	-0.3351	NEUTRAL	NA	188	Too-Many
TCGA.CK.6748	16	91009	5646707	1270	-0.0183	NEUTRAL	NA	188	Too-Many
TCGA.AA.3522	16	91009	5686847	1299	-0.0022	NEUTRAL	NA	188	Too-Many
TCGA.AG.A02N	16	91009	5740529	1339	0.0457	NEUTRAL	NA	188	Too-Many
TCGA.AD.A5EK	16	91009	5751368	1351	-0.0889	NEUTRAL	NA	188	Too-Many
TCGA.AA.3947	16	91009	5759268	1367	0.0631	NEUTRAL	NA	188	Too-Many
TCGA.A6.2683	16	91009	5772479	1375	0.2311	NEUTRAL	NA	188	Too-Many
TCGA.AA.3664	16	91009	5794311	1402	0.0407	NEUTRAL	NA	188	Too-Many
TCGA.CK.6746	16	91009	5809181	1404	-0.0049	NEUTRAL	NA	188	Too-Many
TCGA.A6.2678	16	91009	5856150	1447	-0.0152	NEUTRAL	NA	188	Too-Many
TCGA.CA.5254	16	91009	5856150	1446	0.258	NEUTRAL	NA	188	Too-Many
TCGA.AA.3549	16	91009	5928900	1498	0.0727	NEUTRAL	NA	188	Too-Many
TCGA.CM.6678	16	91009	5947891	1510	-0.1782	NEUTRAL	NA	188	Too-Many
TCGA.G4.6586	16	91009	5949779	1512	-0.0678	NEUTRAL	NA	188	Too-Many
TCGA.AA.3518	16	91009	5995815	1546	0.0678	NEUTRAL	NA	188	Too-Many
TCGA.DC.4745	16	91009	6023891	1572	-0.1254	NEUTRAL	NA	188	Too-Many
TCGA.AG.3885	16	91009	6046396	1584	0.3163	NEUTRAL	NA	188	Too-Many
TCGA.CM.4743	16	91009	6065481	1598	-0.0532	NEUTRAL	NA	188	Too-Many
TCGA.EI.6513	16	91009	6066395	1603	-0.0505	NEUTRAL	NA	188	Too-Many
TCGA.AA.3818	16	91009	6077369	1609	-0.0063	NEUTRAL	NA	189	Too-Many
TCGA.DM.A1HB	16	91009	6078180	1558	0.0392	NEUTRAL	NA	189	Too-Many
TCGA.G4.6294	16	91009	6078180	1610	-0.1382	NEUTRAL	NA	189	Too-Many
TCGA.QG.A5YV	16	91009	6092692	1612	-0.1201	NEUTRAL	NA	189	Too-Many
TCGA.AY.6386	16	91009	6097062	1620	-0.0535	NEUTRAL	NA	189	Too-Many
TCGA.AA.3492	16	91009	6122713	1646	0.0349	NEUTRAL	NA	189	Too-Many
TCGA.AA.3685	16	91009	6161003	1680	-0.2568	NEUTRAL	NA	189	Too-Many
TCGA.AF.3913	16	91009	6161119	1675	-0.0035	NEUTRAL	NA	189	Too-Many
TCGA.A6.6137	16	91009	6163837	1686	-0.0427	NEUTRAL	NA	189	Too-Many
TCGA.AZ.4614	16	91009	6182614	1684	-0.1305	NEUTRAL	NA	189	Too-Many
TCGA.DY.A1DD	16	91009	6182614	1712	-0.0185	NEUTRAL	NA	189	Too-Many
TCGA.AA.A02Y	16	91009	6186395	1708	-0.0007	NEUTRAL	NA	189	Too-Many
TCGA.AA.3511	16	91009	6186576	1713	0.0051	NEUTRAL	NA	189	Too-Many
TCGA.AA.A02O	16	91009	6188570	1713	-0.0177	NEUTRAL	NA	189	Too-Many
TCGA.EI.6512	16	91009	6188570	1713	0.2765	NEUTRAL	NA	189	Too-Many
TCGA.AA.3971	16	91009	6215041	1725	0.371	NEUTRAL	NA	189	Too-Many
TCGA.AA.3543	16	91009	6216254	1725	0.0256	NEUTRAL	NA	189	Too-Many
TCGA.CA.6715	16	91009	6216643	1726	-0.0163	NEUTRAL	NA	189	Too-Many
TCGA.AA.3502	16	91009	6222706	1731	-0.0355	NEUTRAL	NA	189	Too-Many
TCGA.AG.3898	16	91009	6238152	1734	0.076	NEUTRAL	NA	189	Too-Many
TCGA.AZ.6599	16	91009	6263632	1747	-0.1123	NEUTRAL	NA	189	Too-Many
TCGA.AA.3877	16	91009	6264036	1748	0.0248	NEUTRAL	NA	189	Too-Many
TCGA.AZ.6606	16	91009	6264036	1748	0.0353	NEUTRAL	NA	189	Too-Many
TCGA.A6.6653	16	91009	6267863	1752	-0.0385	NEUTRAL	NA	189	Too-Many
TCGA.AZ.4308	16	91009	6268840	1751	-0.0369	NEUTRAL	NA	189	Too-Many
TCGA.A6.2686	16	91009	6281174	1758	0.0196	NEUTRAL	NA	189	Too-Many
TCGA.AA.3949	16	91009	6285090	1763	0.091	NEUTRAL	NA	189	Too-Many
TCGA.AG.3887	16	91009	6285090	1760	-0.0173	NEUTRAL	NA	189	Too-Many
TCGA.CM.6169	16	91009	6301107	1766	-0.1713	NEUTRAL	NA	189	Too-Many
TCGA.AZ.6605	16	91009	6306930	1784	0.2519	NEUTRAL	NA	189	Too-Many
TCGA.AA.3956	16	91009	6311381	1791	0.309	NEUTRAL	NA	189	Too-Many
TCGA.AA.A01P	16	91009	6313027	1791	-0.0401	NEUTRAL	NA	189	Too-Many
TCGA.AZ.6607	16	91009	6321976	1799	-0.1795	NEUTRAL	NA	189	Too-Many
TCGA.A6.6648	16	91009	6337518	1807	-0.0631	NEUTRAL	NA	189	Too-Many
TCGA.A6.2681	16	91009	6338472	1813	0.1236	NEUTRAL	NA	189	Too-Many
TCGA.AA.3848	16	91009	6338472	1815	0.2729	NEUTRAL	NA	189	Too-Many
TCGA.A6.4105	16	91009	6344504	1816	-0.1616	NEUTRAL	NA	189	Too-Many
TCGA.A6.4107	16	91009	6356186	1824	0.2052	NEUTRAL	NA	189	Too-Many
TCGA.AY.4070	16	91009	6356186	1821	-0.2217	NEUTRAL	NA	189	Too-Many
TCGA.A6.6782	16	91009	6380634	1840	0.0635	NEUTRAL	NA	189	Too-Many
TCGA.DY.A1H8	16	91009	6385881	1851	-0.0039	NEUTRAL	NA	189	Too-Many
TCGA.F4.6460	16	91009	6385881	1850	-0.4017	NEUTRAL	NA	189	Too-Many
TCGA.AA.3869	16	91009	6388798	1850	0.3357	NEUTRAL	NA	189	Too-Many
TCGA.AA.3688	16	91009	6391873	1857	0.2338	NEUTRAL	NA	189	Too-Many
TCGA.EI.6509	16	91009	6391873	1857	-0.0383	NEUTRAL	NA	189	Too-Many
TCGA.AA.3713	16	91009	6392825	1853	-0.0301	NEUTRAL	NA	189	Too-Many
TCGA.D5.6540	16	91009	6392825	1853	0.0008	NEUTRAL	NA	189	Too-Many
TCGA.AY.6197	16	91009	6396372	1813	-0.0289	NEUTRAL	NA	189	Too-Many
TCGA.A6.2674	16	91009	6397436	1862	-0.1667	NEUTRAL	NA	189	Too-Many
TCGA.QL.A97D	16	91009	6400687	1859	-0.1982	NEUTRAL	NA	189	Too-Many
TCGA.SS.A7HO	16	91009	6400687	1863	-0.0199	NEUTRAL	NA	189	Too-Many
TCGA.AF.A56K	16	91009	6404836	1864	-0.0869	NEUTRAL	NA	189	Too-Many
TCGA.AY.A71X	16	91009	6408153	1866	-0.0685	NEUTRAL	NA	189	Too-Many
TCGA.AU.6004	16	91009	6415496	1865	-0.1148	NEUTRAL	NA	189	Too-Many
TCGA.CK.6751	16	91009	6415895	1867	-0.0089	NEUTRAL	NA	189	Too-Many
TCGA.QG.A5Z1	16	91009	6431933	1883	-0.0593	NEUTRAL	NA	189	Too-Many
TCGA.AF.4110	16	91009	6449388	1904	-0.0921	NEUTRAL	NA	189	Too-Many
TCGA.AA.A022	16	91009	6452535	1908	-0.0123	NEUTRAL	NA	189	Too-Many
TCGA.AA.3684	16	91009	6463662	1922	0.2004	NEUTRAL	NA	189	Too-Many
TCGA.AA.3660	16	91009	6472751	1927	-0.038	NEUTRAL	NA	189	Too-Many
TCGA.QG.A5YX	16	91009	6481457	1916	-0.1619	NEUTRAL	NA	189	Too-Many
TCGA.AA.3842	16	91009	6481585	1934	0.0998	NEUTRAL	NA	189	Too-Many
TCGA.AY.6196	16	91009	6489158	1912	-0.1443	NEUTRAL	NA	189	Too-Many
TCGA.D5.6536	16	91009	6489262	1936	-0.0268	NEUTRAL	NA	189	Too-Many
TCGA.AG.3893	16	91009	6495490	1931	-0.0478	NEUTRAL	NA	189	Too-Many
TCGA.CM.4752	16	91009	6495490	1944	0.1578	NEUTRAL	NA	189	Too-Many
TCGA.DY.A1DG	16	91009	6496332	1949	-0.0371	NEUTRAL	NA	189	Too-Many
TCGA.AA.A01V	16	91009	6505290	1950	0.0389	NEUTRAL	NA	189	Too-Many
TCGA.A6.2679	16	91009	6509670	1956	0.1723	NEUTRAL	NA	189	Too-Many
TCGA.AU.3779	16	91009	6509670	1954	-0.4101	NEUTRAL	NA	189	Too-Many
TCGA.AG.4015	16	91009	6531617	1961	0.0049	NEUTRAL	NA	189	Too-Many
TCGA.CK.4951	16	91009	6531617	1960	0.0062	NEUTRAL	NA	189	Too-Many
TCGA.D5.5539	16	91009	6534368	1963	0.1585	NEUTRAL	NA	189	Too-Many
TCGA.F5.6464	16	91009	6551088	1982	-0.0725	NEUTRAL	NA	189	Too-Many
TCGA.AG.3728	16	91009	6554252	1988	0.0536	NEUTRAL	NA	189	Too-Many
TCGA.4N.A93T	16	91009	6566663	1999	-0.0702	NEUTRAL	NA	189	Too-Many
TCGA.AA.A01R	16	91009	6570963	1999	-0.0095	NEUTRAL	NA	189	Too-Many
TCGA.AF.2689	16	91009	6588851	2030	0.2621	NEUTRAL	NA	189	Too-Many
TCGA.AF.2693	16	91009	6606587	2044	-0.0702	NEUTRAL	NA	189	Too-Many
TCGA.AG.3883	16	91009	6611882	2049	0.0454	NEUTRAL	NA	189	Too-Many
TCGA.F4.6808	16	91009	6611882	2047	-0.0596	NEUTRAL	NA	189	Too-Many
TCGA.A6.5656	16	91009	6619914	2042	-0.0348	NEUTRAL	NA	189	Too-Many
TCGA.F4.6570	16	91009	6636604	2064	-0.072	NEUTRAL	NA	189	Too-Many
TCGA.NH.A50U	16	91009	6636604	2062	-0.4261	NEUTRAL	NA	189	Too-Many
TCGA.AA.3841	16	91009	6649034	2078	0.2106	NEUTRAL	NA	189	Too-Many
TCGA.NH.A50V	16	91009	6649324	2072	-0.0393	NEUTRAL	NA	189	Too-Many
TCGA.AA.A03F	16	91009	6653812	2087	-0.0155	NEUTRAL	NA	189	Too-Many
TCGA.BM.6198	16	91009	6664719	2099	-0.03165	NEUTRAL	NA	189	Too-Many
TCGA.D5.6533	16	91009	6665696	2095	0.1207	NEUTRAL	NA	189	Too-Many
TCGA.AA.3693	16	91009	6668587	2108	0.0348	NEUTRAL	NA	189	Too-Many
TCGA.AZ.4616	16	91009	6670612	2106	0.0948	NEUTRAL	NA	189	Too-Many
TCGA.EI.6514	16	91009	6698817	2126	0.1682	NEUTRAL	NA	189	Too-Many
TCGA.G5.6233	16	91009	6710972	2140	-0.2158	NEUTRAL	NA	189	Too-Many
TCGA.AG.3881	16	91009	6712185	2143	-0.2381	NEUTRAL	NA	189	Too-Many
TCGA.AF.A56N	16	91009	6763792	2183	-0.0007	NEUTRAL	NA	189	Too-Many
TCGA.AA.3875	16	91009	6767191	2196	0.0326	NEUTRAL	NA	189	Too-Many
TCGA.AA.3821	16	91009	6782735	2203	-0.0331	NEUTRAL	NA	189	Too-Many
TCGA.AG.3602	16	91009	6809810	2218	0.0227	NEUTRAL	NA	189	Too-Many
TCGA.F4.6805	16	91009	6812291	2240	0.2983	NEUTRAL	NA	189	Too-Many
TCGA.AZ.6598	16	91009	6948174	2336	-0.0544	NEUTRAL	NA	189	Too-Many
TCGA.AA.3695	16	91009	6954273	2343	0.0386	NEUTRAL	NA	189	Too-Many
TCGA.AZ.4682	16	91009	7480145	2783	-0.0339	NEUTRAL	NA	189	Too-Many
TCGA.CM.5344	16	91009	8335158	3410	-0.2481	NEUTRAL	NA	189	Too-Many
TCGA.AF.2691	16	91009	9083366	3804	0.0002	NEUTRAL	NA	196	Too-Many
TCGA.AA.3864	16	91009	10579079	4645	0.0923	NEUTRAL	NA	199	Too-Many
TCGA.A6.6780	16	91009	11981342	5232	0.0128	NEUTRAL	NA	218	Too-Many
TCGA.AA.3858	16	91009	13564980	6031	0.0254	NEUTRAL	NA	222	Too-Many
TCGA.5M.AATA	16	91009	19075190	7266	-0.4619	NEUTRAL	NA	252	Too-Many
TCGA.AA.3527	16	91009	22409144	8040	0.3122	NEUTRAL	NA	293	Too-Many
TCGA.D5.6529	16	91009	22625635	8044	-0.2523	NEUTRAL	NA	294	Too-Many
TCGA.G4.6299	16	91009	26132094	9184	-0.1178	NEUTRAL	NA	318	Too-Many
TCGA.G4.6303	16	91009	26976148	9581	0.0742	NEUTRAL	NA	318	Too-Many
TCGA.AG.3890	16	91009	29151298	10045	0.1361	NEUTRAL	NA	348	Too-Many
TCGA.DM.A1D7	16	91009	29230194	10097	0.0586	NEUTRAL	NA	348	Too-Many
TCGA.AF.3911	16	91009	29345439	10113	-0.0481	NEUTRAL	NA	348	Too-Many
TCGA.EI.6511	16	91009	29345439	10109	-0.0103	NEUTRAL	NA	348	Too-Many
TCGA.D5.6532	16	91009	29412502	10111	-0.026	NEUTRAL	NA	348	Too-Many
TCGA.AA.3812	16	91009	30607150	10197	0.0124	NEUTRAL	NA	395	Too-Many
TCGA.F4.6461	16	91009	33828053	10319	-0.0284	NEUTRAL	NA	441	Too-Many
TCGA.AA.3870	16	91009	34197817	10344	0.3567	NEUTRAL	NA	441	Too-Many
TCGA.EI.6508	16	91009	34365857	10375	-0.0217	NEUTRAL	NA	441	Too-Many
TCGA.AA.3972	16	91009	34410954	10373	0.0284	NEUTRAL	NA	441	Too-Many
TCGA.AA.3867	16	91009	34421700	10376	0.2682	NEUTRAL	NA	441	Too-Many
TCGA.AA.3989	16	91009	34437588	10383	0.0948	NEUTRAL	NA	441	Too-Many
TCGA.AA.3975	16	91009	34441794	10372	0.0225	NEUTRAL	NA	441	Too-Many
TCGA.AA.3976	16	91009	34471297	10382	0.3073	NEUTRAL	NA	441	Too-Many
TCGA.A6.2671	16	91009	35205716	10428	0.1185	NEUTRAL	NA	441	Too-Many
TCGA.D5.6539	16	91009	48271461	10610	0.2353	NEUTRAL	NA	453	Too-Many
TCGA.AA.A01S	16	91009	54407803	12782	-0.00565	NEUTRAL	NA	478	Too-Many
TCGA.D5.5538	16	91009	54407803	12782	-0.0223	NEUTRAL	NA	478	Too-Many
TCGA.AA.3558	16	91009	55903308	13496	0.0692	NEUTRAL	NA	486	Too-Many
TCGA.AA.3494	16	91009	56359844	13640	-0.0301	NEUTRAL	NA	487	Too-Many
TCGA.AF.A56L	16	91009	56899539	13740	0.0924	NEUTRAL	NA	504	Too-Many
TCGA.CA.6719	16	91009	57136206	13847	0.2392	NEUTRAL	NA	508	Too-Many
TCGA.DM.A1HA	16	91009	59973460	14732	-0.0026	NEUTRAL	NA	542	Too-Many
TCGA.AZ.4315	16	91009	62624381	15422	-0.0157	NEUTRAL	NA	544	Too-Many
TCGA.AA.3973	16	91009	63421171	15676	0.0659	NEUTRAL	NA	544	Too-Many
TCGA.AA.3667	16	91009	63698272	15774	0.0312	NEUTRAL	NA	544	Too-Many
TCGA.AA.3531	16	91009	69894162	17374	0.0026	NEUTRAL	NA	639	Too-Many
TCGA.AA.3692	16	91009	70806673	17496	0.0146	NEUTRAL	NA	653	Too-Many
TCGA.AG.3727	16	91009	70814786	17505	0.0252	NEUTRAL	NA	653	Too-Many
TCGA.AA.3530	16	91009	70823632	17460	0.1073	NEUTRAL	NA	653	Too-Many
TCGA.A6.6652	16	91009	70836369	17510	-0.0273	NEUTRAL	NA	653	Too-Many
TCGA.AA.3548	16	91009	70842096	17513	0.0868	NEUTRAL	NA	654	Too-Many
TCGA.AA.3675	16	91009	70842096	17512	0.0156	NEUTRAL	NA	654	Too-Many
TCGA.AA.3712	16	91009	70842096	17508	0.229	NEUTRAL	NA	654	Too-Many
TCGA.AA.3814	16	91009	70842096	17511	0.3443	NEUTRAL	NA	654	Too-Many
TCGA.AA.3819	16	91009	70842096	17512	0.0155	NEUTRAL	NA	654	Too-Many
TCGA.AZ.6600	16	91009	70842096	17492	-0.0101	NEUTRAL	NA	654	Too-Many
TCGA.G4.6625	16	91009	70842096	17507	0.056	NEUTRAL	NA	654	Too-Many
TCGA.CM.6676	16	91009	70846070	17455	0.0152	NEUTRAL	NA	654	Too-Many
TCGA.AG.3594	16	91009	70850892	17497	0.0189	NEUTRAL	NA	654	Too-Many
TCGA.F4.6806	16	91009	70850892	17428	-0.0223	NEUTRAL	NA	654	Too-Many
TCGA.G4.6306	16	91009	70855478	17503	0.3746	NEUTRAL	NA	654	Too-Many
TCGA.AG.4022	16	91009	70869420	17518	0.258	NEUTRAL	NA	654	Too-Many
TCGA.AA.3856	16	91009	70874791	17524	0.2394	NEUTRAL	NA	654	Too-Many
TCGA.AG.3584	16	91009	70874791	17521	-0.0208	NEUTRAL	NA	654	Too-Many
TCGA.AA.3681	16	91009	70883844	17523	0.0209	NEUTRAL	NA	654	Too-Many
TCGA.AA.3837	16	91009	70883844	17526	-0.2857	NEUTRAL	NA	654	Too-Many
TCGA.DM.A1D4	16	91009	70958507	17547	-0.0062	NEUTRAL	NA	654	Too-Many
TCGA.AG.3580	16	91009	70963727	17543	0.0215	NEUTRAL	NA	654	Too-Many
TCGA.AA.3673	16	91009	70999656	17567	0.1573	NEUTRAL	NA	654	Too-Many
TCGA.AA.3678	16	91009	70999656	17566	0.0032	NEUTRAL	NA	654	Too-Many
TCGA.AA.3831	16	91009	70999656	17539	0.0139	NEUTRAL	NA	654	Too-Many
TCGA.AA.3854	16	91009	71001137	17568	0.024	NEUTRAL	NA	654	Too-Many
TCGA.AG.3878	16	91009	71001137	17571	0.0631	NEUTRAL	NA	654	Too-Many
TCGA.AA.3833	16	91009	71018470	17573	-0.0198	NEUTRAL	NA	654	Too-Many
TCGA.NH.A5IV	16	91009	71142396	17562	0.0181	NEUTRAL	NA	654	Too-Many
TCGA.AG.3731	16	91009	75110817	18788	-0.0484	NEUTRAL	NA	684	Too-Many
TCGA.D5.6530	16	91009	77819473	20029	-0.0343	NEUTRAL	NA	703	Too-Many
TCGA.A6.6138	16	91009	77896020	20104	0	NEUTRAL	NA	704	Too-Many
TCGA.AA.3715	16	91009	78087729	20241	0.0162	NEUTRAL	NA	705	Too-Many
TCGA.DM.A1DA	16	91009	78148743	20258	-0.1769	NEUTRAL	NA	706	Too-Many
TCGA.QG.A5Z2	16	91009	78236070	20155	-0.0407	NEUTRAL	NA	706	Too-Many
TCGA.DM.A0XD	16	91009	78538759	20459	-0.0161	NEUTRAL	NA	706	Too-Many
TCGA.AA.3516	16	91009	78541354	20507	0.0013	NEUTRAL	NA	706	Too-Many
TCGA.AA.3663	16	91009	78634050	20583	-0.0074	NEUTRAL	NA	706	Too-Many
TCGA.AA.3845	16	91009	78653521	20591	0.0312	NEUTRAL	NA	706	Too-Many
TCGA.DM.A0X9	16	91009	78902323	20867	-0.0343	NEUTRAL	NA	706	Too-Many
TCGA.G4.6628	16	91009	78935729	20859	-0.0096	NEUTRAL	NA	706	Too-Many
TCGA.EI.6507	16	91009	78940746	20908	-0.0197	NEUTRAL	NA	706	Too-Many
TCGA.AY.4071	16	91009	79793260	21471	0.2248	NEUTRAL	NA	707	Too-Many
TCGA.AA.3696	16	91009	79880393	21663	-0.0017	NEUTRAL	NA	707	Too-Many
TCGA.AA.3556	16	91009	80535457	22076	-0.0062	NEUTRAL	NA	707	Too-Many
TCGA.AA.3524	16	91009	82833826	23587	-0.033	NEUTRAL	NA	723	Too-Many
TCGA.AG.3598	16	91009	83170416	23814	0.0127	NEUTRAL	NA	723	Too-Many
TCGA.CM.6168	16	91009	84905541	25145	-0.009	NEUTRAL	NA	741	Too-Many
TCGA.CM.5349	16	91009	86000462	25570	-0.0531	NEUTRAL	NA	750	Too-Many
TCGA.CA.5256	16	91009	90158837	26871	0.0052	NEUTRAL	NA	806	Too-Many
TCGA.3L.AA1B	16	91009	90163274	27108	-0.1085	NEUTRAL	NA	806	Too-Many
TCGA.4T.AA8H	16	91009	90163274	27105	-0.0276	NEUTRAL	NA	806	Too-Many
TCGA.5M.AAT6	16	91009	90163274	27089	-0.0015	NEUTRAL	NA	806	Too-Many
TCGA.A6.2682	16	91009	90163274	26652	-0.0042	NEUTRAL	NA	806	Too-Many
TCGA.A6.5664	16	91009	90163274	27038	-0.011	NEUTRAL	NA	806	Too-Many
TCGA.A6.5667	16	91009	90163274	27100	0.175	NEUTRAL	NA	806	Too-Many
TCGA.A6.6141	16	91009	90163274	27098	-0.0239	NEUTRAL	NA	806	Too-Many
TCGA.A6.6649	16	91009	90163274	27116	-0.1243	NEUTRAL	NA	806	Too-Many
TCGA.A6.6651	16	91009	90163274	27014	-0.0906	NEUTRAL	NA	806	Too-Many
TCGA.A6.6654	16	91009	90163274	27052	0.2858	NEUTRAL	NA	806	Too-Many
TCGA.A6.A565	16	91009	90163274	26934	-0.094	NEUTRAL	NA	806	Too-Many
TCGA.A6.A567	16	91009	90163274	26935	-0.1086	NEUTRAL	NA	806	Too-Many
TCGA.A6.A56B	16	91009	90163274	26970	-0.0356	NEUTRAL	NA	806	Too-Many
TCGA.AA.3495	16	91009	90163274	27088	0.0022	NEUTRAL	NA	806	Too-Many
TCGA.AA.3496	16	91009	90163274	27021	0.0225	NEUTRAL	NA	806	Too-Many
TCGA.AA.3510	16	91009	90163274	27086	0.0038	NEUTRAL	NA	806	Too-Many
TCGA.AA.3514	16	91009	90163274	27091	0.0121	NEUTRAL	NA	806	Too-Many
TCGA.AA.3517	16	91009	90163274	27072	-0.0002	NEUTRAL	NA	806	Too-Many
TCGA.AA.3519	16	91009	90163274	27104	-0.015	NEUTRAL	NA	806	Too-Many
TCGA.AA.3526	16	91009	90163274	27099	-0.0128	NEUTRAL	NA	806	Too-Many
TCGA.AA.3529	16	91009	90163274	27085	-0.0275	NEUTRAL	NA	806	Too-Many
TCGA.AA.3532	16	91009	90163274	27096	0.2923	NEUTRAL	NA	806	Too-Many
TCGA.AA.3534	16	91009	90163274	27099	-0.0191	NEUTRAL	NA	806	Too-Many
TCGA.AA.3544	16	91009	90163274	27123	0.0129	NEUTRAL	NA	806	Too-Many
TCGA.AA.3555	16	91009	90163274	27120	-0.0009	NEUTRAL	NA	806	Too-Many
TCGA.AA.3561	16	91009	90163274	27119	-0.0053	NEUTRAL	NA	806	Too-Many
TCGA.AA.3655	16	91009	90163274	27103	-0.0184	NEUTRAL	NA	806	Too-Many
TCGA.AA.3662	16	91009	90163274	27094	-0.0494	NEUTRAL	NA	806	Too-Many
TCGA.AA.3680	16	91009	90163274	27124	0.0114	NEUTRAL	NA	806	Too-Many
TCGA.AA.3710	16	91009	90163274	27107	-0.0231	NEUTRAL	NA	806	Too-Many
TCGA.AA.3851	16	91009	90163274	27087	0.2906	NEUTRAL	NA	806	Too-Many
TCGA.AA.3852	16	91009	90163274	27125	-0.0285	NEUTRAL	NA	806	Too-Many
TCGA.AA.3855	16	91009	90163274	27033	-0.0122	NEUTRAL	NA	806	Too-Many
TCGA.AA.3950	16	91009	90163274	27096	0.036	NEUTRAL	NA	806	Too-Many
TCGA.AA.3977	16	91009	90163274	27035	0.0827	NEUTRAL	NA	806	Too-Many
TCGA.AA.3984	16	91009	90163274	27079	-0.0339	NEUTRAL	NA	806	Too-Many
TCGA.AA.3986	16	91009	90163274	27095	0.0159	NEUTRAL	NA	806	Too-Many
TCGA.AA.3994	16	91009	90163274	27072	-0.0061	NEUTRAL	NA	806	Too-Many
TCGA.AA.A01X	16	91009	90163274	27053	0.0351	NEUTRAL	NA	806	Too-Many
TCGA.AA.A03J	16	91009	90163274	26550	0.2364	NEUTRAL	NA	806	Too-Many
TCGA.AD.6548	16	91009	90163274	27029	-0.0329	NEUTRAL	NA	806	Too-Many
TCGA.AD.A5EJ	16	91009	90163274	26972	-0.0291	NEUTRAL	NA	806	Too-Many
TCGA.AF.2687	16	91009	90163274	27050	0	NEUTRAL	NA	806	Too-Many
TCGA.AF.2690	16	91009	90163274	27115	-0.0076	NEUTRAL	NA	806	Too-Many
TCGA.AG.3574	16	91009	90163274	27108	0.0041	NEUTRAL	NA	806	Too-Many
TCGA.AG.3575	16	91009	90163274	27117	-0.0177	NEUTRAL	NA	806	Too-Many
TCGA.AG.3581	16	91009	90163274	27107	-0.0191	NEUTRAL	NA	806	Too-Many
TCGA.AG.3583	16	91009	90163274	26246	-0.0089	NEUTRAL	NA	806	Too-Many
TCGA.AG.3591	16	91009	90163274	27118	-0.217	NEUTRAL	NA	806	Too-Many
TCGA.AG.3599	16	91009	90163274	27087	0.0039	NEUTRAL	NA	806	Too-Many
TCGA.AG.3882	16	91009	90163274	27120	0.0206	NEUTRAL	NA	806	Too-Many
TCGA.AG.3892	16	91009	90163274	27030	-0.0078	NEUTRAL	NA	806	Too-Many
TCGA.AG.3894	16	91009	90163274	27027	-0.0096	NEUTRAL	NA	806	Too-Many
TCGA.AG.3901	16	91009	90163274	27043	-0.0098	NEUTRAL	NA	806	Too-Many
TCGA.AG.3902	16	91009	90163274	27038	0.0101	NEUTRAL	NA	806	Too-Many
TCGA.AG.4021	16	91009	90163274	27068	-0.032	NEUTRAL	NA	806	Too-Many
TCGA.AG.A020	16	91009	90163274	27084	-0.0226	NEUTRAL	NA	806	Too-Many
TCGA.AY.A69D	16	91009	90163274	27034	-0.3422	NEUTRAL	NA	806	Too-Many
TCGA.AZ.4323	16	91009	90163274	27005	0.0416	NEUTRAL	NA	806	Too-Many
TCGA.AZ.5407	16	91009	90163274	27106	-0.0314	NEUTRAL	NA	806	Too-Many
TCGA.AZ.6601	16	91009	90163274	27113	-0.0112	NEUTRAL	NA	806	Too-Many
TCGA.AZ.6603	16	91009	90163274	27063	0.2564	NEUTRAL	NA	806	Too-Many
TCGA.CA.5255	16	91009	90163274	27031	-0.028	NEUTRAL	NA	806	Too-Many
TCGA.CA.6716	16	91009	90163274	27067	0.0264	NEUTRAL	NA	806	Too-Many
TCGA.CA.6717	16	91009	90163274	27016	-0.0242	NEUTRAL	NA	806	Too-Many
TCGA.CA.6718	16	91009	90163274	27037	-0.0238	NEUTRAL	NA	806	Too-Many
TCGA.CL.4957	16	91009	90163274	27118	0.0372	NEUTRAL	NA	806	Too-Many
TCGA.CM.4746	16	91009	90163274	27074	-0.0113	NEUTRAL	NA	806	Too-Many
TCGA.CM.4747	16	91009	90163274	27078	-0.031	NEUTRAL	NA	806	Too-Many
TCGA.CM.4748	16	91009	90163274	27096	-0.0063	NEUTRAL	NA	806	Too-Many
TCGA.CM.5341	16	91009	90163274	27084	0.0157	NEUTRAL	NA	806	Too-Many
TCGA.CM.5863	16	91009	90163274	27076	-0.0203	NEUTRAL	NA	806	Too-Many
TCGA.CM.6167	16	91009	90163274	27095	0.1682	NEUTRAL	NA	806	Too-Many
TCGA.CM.6171	16	91009	90163274	27121	-0.0387	NEUTRAL	NA	806	Too-Many
TCGA.CM.6674	16	91009	90163274	27059	-0.0213	NEUTRAL	NA	806	Too-Many
TCGA.CM.6675	16	91009	90163274	27045	0.0032	NEUTRAL	NA	806	Too-Many
TCGA.CM.6677	16	91009	90163274	26987	-0.0031	NEUTRAL	NA	806	Too-Many
TCGA.CM.6679	16	91009	90163274	27013	0.28045	NEUTRAL	NA	806	Too-Many
TCGA.CM.6680	16	91009	90163274	27068	0.0254	NEUTRAL	NA	806	Too-Many
TCGA.D5.6531	16	91009	90163274	27111	-0.258	NEUTRAL	NA	806	Too-Many
TCGA.D5.6541	16	91009	90163274	27112	-0.0304	NEUTRAL	NA	806	Too-Many
TCGA.DM.A0XF	16	91009	90163274	27099	0.1821	NEUTRAL	NA	806	Too-Many
TCGA.DY.A0XA	16	91009	90163274	27083	0.0211	NEUTRAL	NA	806	Too-Many
TCGA.DY.A1DC	16	91009	90163274	27058	-0.0335	NEUTRAL	NA	806	Too-Many
TCGA.EI.6506	16	91009	90163274	27054	-0.0264	NEUTRAL	NA	806	Too-Many
TCGA.EI.6510	16	91009	90163274	27075	-0.0183	NEUTRAL	NA	806	Too-Many
TCGA.F4.6463	16	91009	90163274	27095	-0.0468	NEUTRAL	NA	806	Too-Many
TCGA.F4.6569	16	91009	90163274	27117	-0.0347	NEUTRAL	NA	806	Too-Many
TCGA.F4.6703	16	91009	90163274	27078	0.0272	NEUTRAL	NA	806	Too-Many
TCGA.F4.6807	16	91009	90163274	27036	-0.008	NEUTRAL	NA	806	Too-Many
TCGA.G4.6293	16	91009	90163274	27082	-0.0506	NEUTRAL	NA	806	Too-Many
TCGA.G4.6309	16	91009	90163274	27063	-0.0174	NEUTRAL	NA	806	Too-Many
TCGA.G4.6588	16	91009	90163274	27107	-0.0478	NEUTRAL	NA	806	Too-Many
TCGA.G5.6235	16	91009	90163274	27118	-0.0354	NEUTRAL	NA	806	Too-Many
TCGA.NH.A50T	16	91009	90163274	26952	-0.3341	NEUTRAL	NA	806	Too-Many
TCGA.NH.A6GA	16	91009	90163274	27096	-0.0097	NEUTRAL	NA	806	Too-Many
TCGA.NH.A6GB	16	91009	90163274	27107	0.0228	NEUTRAL	NA	806	Too-Many
TCGA.NH.A8F7	16	91009	90163274	26977	-0.002	NEUTRAL	NA	806	Too-Many
TCGA.NH.A8F8	16	91009	90163274	27100	-0.0052	NEUTRAL	NA	806	Too-Many
TCGA.QG.A5YW	16	91009	90163274	26973	-0.0824	NEUTRAL	NA	806	Too-Many
TCGA.RU.A8FL	16	91009	90163274	27109	-0.1257	NEUTRAL	NA	806	Too-Many
TCGA.WS.AB45	16	91009	90163274	27092	-0.0242	NEUTRAL	NA	806	Too-Many
TCGA.AM.5821	16	94807	1161809	165	0.265	NEUTRAL	NA	50	"ARHGDIG,AXIN1,C16orf13,C1QTNF8,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SSTR5,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.CL.5917	16	94807	1852774	271	0.0629	NEUTRAL	NA	76	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,METRN,MPG,MRPL28,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NPRL3,NUBP2,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.F5.6863	16	94807	3366512	517	0.1709	NEUTRAL	NA	145	Too-Many
TCGA.F5.6812	16	94807	4877552	918	-0.0535	NEUTRAL	NA	181	Too-Many
TCGA.DM.A28A	16	94807	5282313	1053	-0.0448	NEUTRAL	NA	188	Too-Many
TCGA.CK.5913	16	94807	5285519	1058	0.0088	NEUTRAL	NA	188	Too-Many
TCGA.DM.A28F	16	94807	5425167	1111	-0.0343	NEUTRAL	NA	188	Too-Many
TCGA.EI.7002	16	94807	5479167	1134	-0.0491	NEUTRAL	NA	188	Too-Many
TCGA.AD.6901	16	94807	5755822	1361	-0.0335	NEUTRAL	NA	188	Too-Many
TCGA.DC.6681	16	94807	5785306	1391	-0.0665	NEUTRAL	NA	188	Too-Many
TCGA.AF.6672	16	94807	5804159	1398	-0.0092	NEUTRAL	NA	188	Too-Many
TCGA.EF.5830	16	94807	5827014	1416	0.0664	NEUTRAL	NA	188	Too-Many
TCGA.CK.5916	16	94807	6029561	1568	-0.0533	NEUTRAL	NA	188	Too-Many
TCGA.CM.6163	16	94807	6054490	1580	-0.202	NEUTRAL	NA	188	Too-Many
TCGA.AH.6903	16	94807	6065481	1596	0.0221	NEUTRAL	NA	188	Too-Many
TCGA.D5.6930	16	94807	6106259	1622	-0.0047	NEUTRAL	NA	189	Too-Many
TCGA.D5.6926	16	94807	6186576	1709	-0.0133	NEUTRAL	NA	189	Too-Many
TCGA.F4.6855	16	94807	6225026	1728	0.0201	NEUTRAL	NA	189	Too-Many
TCGA.CA.5796	16	94807	6238084	1733	0.0385	NEUTRAL	NA	189	Too-Many
TCGA.DC.6682	16	94807	6238152	1739	-0.3894	NEUTRAL	NA	189	Too-Many
TCGA.AG.3742	16	94807	6241182	1722	-0.0203	NEUTRAL	NA	189	Too-Many
TCGA.G4.6310	16	94807	6305101	1776	0.2009	NEUTRAL	NA	189	Too-Many
TCGA.CM.5860	16	94807	6313027	1790	0.2224	NEUTRAL	NA	189	Too-Many
TCGA.DM.A28K	16	94807	6315930	1793	0.0114	NEUTRAL	NA	189	Too-Many
TCGA.CM.5348	16	94807	6331740	1800	0.1966	NEUTRAL	NA	189	Too-Many
TCGA.F5.6813	16	94807	6331740	1798	0.0194	NEUTRAL	NA	189	Too-Many
TCGA.AH.6644	16	94807	6356186	1822	0.3474	NEUTRAL	NA	189	Too-Many
TCGA.F4.6856	16	94807	6382433	1845	0.0135	NEUTRAL	NA	189	Too-Many
TCGA.CM.5861	16	94807	6404836	1866	-0.0214	NEUTRAL	NA	189	Too-Many
TCGA.AH.6544	16	94807	6415895	1869	-0.0279	NEUTRAL	NA	189	Too-Many
TCGA.AZ.5403	16	94807	6463662	1914	0.1388	NEUTRAL	NA	189	Too-Many
TCGA.A6.6781	16	94807	6466782	1788	-0.0796	NEUTRAL	NA	189	Too-Many
TCGA.A6.2675	16	94807	6485237	1926	0.1683	NEUTRAL	NA	189	Too-Many
TCGA.AD.6899	16	94807	6495490	1941	-0.1608	NEUTRAL	NA	189	Too-Many
TCGA.AF.5654	16	94807	6505290	1946	0.0121	NEUTRAL	NA	189	Too-Many
TCGA.CI.6623	16	94807	6512732	1955	0.0322	NEUTRAL	NA	189	Too-Many
TCGA.F5.6864	16	94807	6516904	1957	-0.035	NEUTRAL	NA	189	Too-Many
TCGA.G4.6314	16	94807	6520152	1956	-0.021	NEUTRAL	NA	189	Too-Many
TCGA.DC.6155	16	94807	6531428	1954	-0.13	NEUTRAL	NA	189	Too-Many
TCGA.A6.5659	16	94807	6531617	1818	0.3245	NEUTRAL	NA	189	Too-Many
TCGA.G4.6323	16	94807	6531617	1959	0.0412	NEUTRAL	NA	189	Too-Many
TCGA.AF.6655	16	94807	6538985	1966	0.2455	NEUTRAL	NA	189	Too-Many
TCGA.CM.5862	16	94807	6587246	2020	-0.1362	NEUTRAL	NA	189	Too-Many
TCGA.D5.6920	16	94807	6606587	2038	-0.0165	NEUTRAL	NA	189	Too-Many
TCGA.G5.6572	16	94807	6724105	2147	-0.0092	NEUTRAL	NA	189	Too-Many
TCGA.EI.6882	16	94807	6782735	2207	-0.0085	NEUTRAL	NA	189	Too-Many
TCGA.DM.A28H	16	94807	6793932	2211	0.0024	NEUTRAL	NA	189	Too-Many
TCGA.AY.5543	16	94807	6807705	2209	0.3207	NEUTRAL	NA	189	Too-Many
TCGA.AH.6643	16	94807	6985996	2367	-0.0271	NEUTRAL	NA	189	Too-Many
TCGA.AD.6965	16	94807	7148536	2470	0.0435	NEUTRAL	NA	189	Too-Many
TCGA.G4.6320	16	94807	7198476	2527	0.1448	NEUTRAL	NA	189	Too-Many
TCGA.D5.6923	16	94807	7546025	2848	-0.0519	NEUTRAL	NA	189	Too-Many
TCGA.G4.6307	16	94807	8047957	3231	0.2659	NEUTRAL	NA	189	Too-Many
TCGA.G4.6322	16	94807	12728586	5637	-0.0197	NEUTRAL	NA	220	Too-Many
TCGA.A6.2677	16	94807	20082591	7034	-0.2552	NEUTRAL	NA	264	Too-Many
TCGA.AD.6888	16	94807	22625635	8033	-0.0584	NEUTRAL	NA	294	Too-Many
TCGA.D5.6922	16	94807	27476547	9781	-0.0124	NEUTRAL	NA	324	Too-Many
TCGA.CM.6166	16	94807	29128461	10078	-0.0385	NEUTRAL	NA	348	Too-Many
TCGA.A6.6650	16	94807	30320306	9405	-0.0475	NEUTRAL	NA	381	Too-Many
TCGA.D5.6538	16	94807	30928969	10208	-0.0892	NEUTRAL	NA	407	Too-Many
TCGA.D5.6927	16	94807	34437588	10372	0.0056	NEUTRAL	NA	441	Too-Many
TCGA.F5.6571	16	94807	34441794	10374	-0.0074	NEUTRAL	NA	441	Too-Many
TCGA.A6.5660	16	94807	55795047	13439	0.3286	NEUTRAL	NA	484	Too-Many
TCGA.CI.6619	16	94807	62028274	15257	-0.0143	NEUTRAL	NA	544	Too-Many
TCGA.D5.6932	16	94807	62955906	15513	0.0412	NEUTRAL	NA	544	Too-Many
TCGA.EI.6885	16	94807	70806673	17464	-0.0047	NEUTRAL	NA	653	Too-Many
TCGA.D5.6929	16	94807	70842096	17480	0.2397	NEUTRAL	NA	654	Too-Many
TCGA.DM.A28C	16	94807	70842096	17487	-0.0191	NEUTRAL	NA	654	Too-Many
TCGA.G4.6295	16	94807	70842096	17502	0.0126	NEUTRAL	NA	654	Too-Many
TCGA.AH.6547	16	94807	70855478	17499	-0.0131	NEUTRAL	NA	654	Too-Many
TCGA.A6.3809	16	94807	70859683	16215	-0.0284	NEUTRAL	NA	654	Too-Many
TCGA.CI.6621	16	94807	70874791	17499	-0.0393	NEUTRAL	NA	654	Too-Many
TCGA.CM.6164	16	94807	70891235	17505	0.0096	NEUTRAL	NA	654	Too-Many
TCGA.CM.6161	16	94807	70928413	17512	-0.1232	NEUTRAL	NA	654	Too-Many
TCGA.D5.6924	16	94807	71001137	17534	-0.0365	NEUTRAL	NA	654	Too-Many
TCGA.EI.7004	16	94807	72871204	17948	-0.0123	NEUTRAL	NA	674	Too-Many
TCGA.CA.5797	16	94807	78599151	20593	0.2121	NEUTRAL	NA	706	Too-Many
TCGA.AD.6964	16	94807	78645312	20608	-0.0343	NEUTRAL	NA	706	Too-Many
TCGA.F5.6814	16	94807	78665807	20607	-0.0952	NEUTRAL	NA	706	Too-Many
TCGA.AH.6897	16	94807	79011251	20943	-0.0177	NEUTRAL	NA	706	Too-Many
TCGA.DM.A288	16	94807	80287252	21878	-0.0018	NEUTRAL	NA	707	Too-Many
TCGA.DC.5869	16	94807	90158837	27050	0.1043	NEUTRAL	NA	806	Too-Many
TCGA.A6.2680	16	94807	90163274	27063	0.2212	NEUTRAL	NA	806	Too-Many
TCGA.A6.2684	16	94807	90163274	25116	-0.0387	NEUTRAL	NA	806	Too-Many
TCGA.A6.5657	16	94807	90163274	27061	-0.0379	NEUTRAL	NA	806	Too-Many
TCGA.A6.5662	16	94807	90163274	27048	0.0513	NEUTRAL	NA	806	Too-Many
TCGA.A6.5666	16	94807	90163274	27094	0.0198	NEUTRAL	NA	806	Too-Many
TCGA.A6.A566	16	94807	90163274	26892	0.0044	NEUTRAL	NA	806	Too-Many
TCGA.AA.3489	16	94807	90163274	27027	0.0055	NEUTRAL	NA	806	Too-Many
TCGA.AD.5900	16	94807	90163274	27064	-0.0305	NEUTRAL	NA	806	Too-Many
TCGA.AD.6889	16	94807	90163274	27085	-0.0541	NEUTRAL	NA	806	Too-Many
TCGA.AD.6890	16	94807	90163274	27085	-0.0302	NEUTRAL	NA	806	Too-Many
TCGA.AD.6895	16	94807	90163274	27088	-0.0481	NEUTRAL	NA	806	Too-Many
TCGA.AD.6963	16	94807	90163274	27092	0.0953	NEUTRAL	NA	806	Too-Many
TCGA.AF.6136	16	94807	90163274	27087	0.1833	NEUTRAL	NA	806	Too-Many
TCGA.CI.6620	16	94807	90163274	27062	-0.0035	NEUTRAL	NA	806	Too-Many
TCGA.CI.6624	16	94807	90163274	27062	0.0295	NEUTRAL	NA	806	Too-Many
TCGA.CK.4947	16	94807	90163274	27082	-0.0392	NEUTRAL	NA	806	Too-Many
TCGA.CK.4950	16	94807	90163274	26832	-0.0627	NEUTRAL	NA	806	Too-Many
TCGA.CK.5915	16	94807	90163274	27057	-0.2665	NEUTRAL	NA	806	Too-Many
TCGA.CL.5918	16	94807	90163274	27055	-0.0147	NEUTRAL	NA	806	Too-Many
TCGA.CM.5864	16	94807	90163274	27066	-0.023	NEUTRAL	NA	806	Too-Many
TCGA.CM.5868	16	94807	90163274	27079	0.2235	NEUTRAL	NA	806	Too-Many
TCGA.CM.6162	16	94807	90163274	27035	-0.0452	NEUTRAL	NA	806	Too-Many
TCGA.D5.5537	16	94807	90163274	27046	-0.0004	NEUTRAL	NA	806	Too-Many
TCGA.D5.6534	16	94807	90163274	27053	0.0268	NEUTRAL	NA	806	Too-Many
TCGA.D5.6537	16	94807	90163274	26981	-0.0537	NEUTRAL	NA	806	Too-Many
TCGA.D5.6898	16	94807	90163274	27064	-0.0141	NEUTRAL	NA	806	Too-Many
TCGA.D5.6928	16	94807	90163274	27065	-0.0278	NEUTRAL	NA	806	Too-Many
TCGA.D5.6931	16	94807	90163274	27056	-0.0219	NEUTRAL	NA	806	Too-Many
TCGA.D5.7000	16	94807	90163274	26976	-0.0208	NEUTRAL	NA	806	Too-Many
TCGA.DC.5337	16	94807	90163274	26993	-0.0117	NEUTRAL	NA	806	Too-Many
TCGA.DC.6157	16	94807	90163274	26845	-0.0723	NEUTRAL	NA	806	Too-Many
TCGA.DC.6158	16	94807	90163274	27031	-0.0319	NEUTRAL	NA	806	Too-Many
TCGA.DC.6683	16	94807	90163274	27058	0.2622	NEUTRAL	NA	806	Too-Many
TCGA.DM.A280	16	94807	90163274	27073	0.0152	NEUTRAL	NA	806	Too-Many
TCGA.DM.A285	16	94807	90163274	27063	-0.0018	NEUTRAL	NA	806	Too-Many
TCGA.DM.A28E	16	94807	90163274	27034	-0.014	NEUTRAL	NA	806	Too-Many
TCGA.DM.A28G	16	94807	90163274	27084	0.0023	NEUTRAL	NA	806	Too-Many
TCGA.DT.5265	16	94807	90163274	27087	-0.0415	NEUTRAL	NA	806	Too-Many
TCGA.EI.6881	16	94807	90163274	27065	-0.0078	NEUTRAL	NA	806	Too-Many
TCGA.EI.6884	16	94807	90163274	27039	-0.0041	NEUTRAL	NA	806	Too-Many
TCGA.EI.6917	16	94807	90163274	27030	-0.0516	NEUTRAL	NA	806	Too-Many
TCGA.F4.6704	16	94807	90163274	27070	0.116	NEUTRAL	NA	806	Too-Many
TCGA.F4.6854	16	94807	90163274	27062	-0.0035	NEUTRAL	NA	806	Too-Many
TCGA.F5.6702	16	94807	90163274	27004	0.1591	NEUTRAL	NA	806	Too-Many
TCGA.F5.6861	16	94807	90163274	27045	0.0022	NEUTRAL	NA	806	Too-Many
TCGA.G4.6297	16	94807	90163274	27102	0.0986	NEUTRAL	NA	806	Too-Many
TCGA.G4.6298	16	94807	90163274	27102	-0.0098	NEUTRAL	NA	806	Too-Many
TCGA.G4.6302	16	94807	90163274	27096	-0.0152	NEUTRAL	NA	806	Too-Many
TCGA.G4.6304	16	94807	90163274	27060	-0.026	NEUTRAL	NA	806	Too-Many
TCGA.G4.6311	16	94807	90163274	27104	0.2097	NEUTRAL	NA	806	Too-Many
TCGA.G4.6315	16	94807	90163274	27114	-0.0014	NEUTRAL	NA	806	Too-Many
TCGA.G4.6317	16	94807	90163274	27111	0	NEUTRAL	NA	806	Too-Many
TCGA.G4.6321	16	94807	90163274	27113	-0.0092	NEUTRAL	NA	806	Too-Many
TCGA.G5.6641	16	94807	90163274	27060	-0.0895	NEUTRAL	NA	806	Too-Many
TCGA.AG.3909.01A	16	97383	112529	13	-0.2519	NEUTRAL	NA	3	"POLR3K,RHBDF1,SNRNP25"
TCGA.AG.3891.01A	16	97383	419037	66	0.2966	NEUTRAL	NA	17	"ARHGDIG,AXIN1,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,MRPL28,NPRL3,PDIA2,POLR3K,RGS11,RHBDF1,SNRNP25"
TCGA.AA.A029.01A	16	97383	1476093	88	-0.4004	NEUTRAL	NA	61	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SSTR5,STUB1,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.AA.A00L.01A	16	97383	1575881	180	0.1639	NEUTRAL	NA	66	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,DECR2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,IFT140,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SSTR5,STUB1,TELO2,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.AA.A02W.01A	16	97383	2314528	235	-0.3442	NEUTRAL	NA	105	Too-Many
TCGA.AG.A01N.01A	16	97383	2485739	299	0.0385	NEUTRAL	NA	107	Too-Many
TCGA.AG.A011.01A	16	97383	2489312	298	0.0295	NEUTRAL	NA	107	Too-Many
TCGA.AG.A00C.01A	16	97383	2550845	374	0.0676	NEUTRAL	NA	110	Too-Many
TCGA.AA.A00O.01A	16	97383	2810315	252	-0.0287	NEUTRAL	NA	117	Too-Many
TCGA.AA.A00A.01A	16	97383	3556273	379	0.2764	NEUTRAL	NA	153	Too-Many
TCGA.AA.A01D.01A	16	97383	3558285	282	-0.4592	NEUTRAL	NA	153	Too-Many
TCGA.AA.A01I.01A	16	97383	4873769	567	-0.4091	NEUTRAL	NA	181	Too-Many
TCGA.AG.3611.01A	16	97383	5135601	690	0.3411	NEUTRAL	NA	188	Too-Many
TCGA.AA.A02E.01A	16	97383	5145487	604	-0.363	NEUTRAL	NA	188	Too-Many
TCGA.AG.A023.01A	16	97383	8732885	618	-0.2912	NEUTRAL	NA	191	Too-Many
TCGA.AG.A016.01A	16	97383	8734913	710	0.3394	NEUTRAL	NA	191	Too-Many
TCGA.AA.3967.01A	16	97383	11051590	1174	0.1814	NEUTRAL	NA	206	Too-Many
TCGA.AA.A00K.01A	16	97383	15802606	938	0.3769	NEUTRAL	NA	240	Too-Many
TCGA.AG.A015.01A	16	97383	16234982	1170	0.3134	NEUTRAL	NA	242	Too-Many
TCGA.AA.A017.01A	16	97383	19873107	1268	-0.1456	NEUTRAL	NA	263	Too-Many
TCGA.AF.3914.01A	16	97383	28878652	2510	0.1195	NEUTRAL	NA	342	Too-Many
TCGA.AG.A008.01A	16	97383	29845007	2405	0.1635	NEUTRAL	NA	363	Too-Many
TCGA.AG.3906.01A	16	97383	30092526	2407	0.0891	NEUTRAL	NA	376	Too-Many
TCGA.AA.A01F.01A	16	97383	67964593	3480	0.154	NEUTRAL	NA	605	Too-Many
TCGA.AG.A00Y.01A	16	97383	70502725	4420	0.3321	NEUTRAL	NA	648	Too-Many
TCGA.AA.A02F.01A	16	97383	84129165	4469	-0.0098	NEUTRAL	NA	729	Too-Many
TCGA.AA.A00J.01A	16	97383	90128319	4825	0.1064	NEUTRAL	NA	806	Too-Many
TCGA.A6.3810.01A	16	97383	90142216	6900	-0.13	NEUTRAL	NA	806	Too-Many
TCGA.AA.A004.01A	16	97383	90142216	4979	-0.175	NEUTRAL	NA	806	Too-Many
TCGA.AA.A01C.01A	16	97383	90142216	5564	0.2076	NEUTRAL	NA	806	Too-Many
TCGA.AA.A024.01A	16	97383	90142216	5748	0.062	NEUTRAL	NA	806	Too-Many
TCGA.AA.A02H.01A	16	97383	90142216	5160	-0.1483	NEUTRAL	NA	806	Too-Many
TCGA.AA.A02J.01A	16	97383	90142216	4875	-0.0804	NEUTRAL	NA	806	Too-Many
TCGA.AA.A02R.01A	16	97383	90142216	4993	-0.0667	NEUTRAL	NA	806	Too-Many
TCGA.AG.A00H.01A	16	97383	90142216	5379	-0.0914	NEUTRAL	NA	806	Too-Many
TCGA.AG.A01J.01A	16	97383	90142216	5265	-0.1409	NEUTRAL	NA	806	Too-Many
TCGA.AG.A01L.01A	16	97383	90142216	5549	0.1659	NEUTRAL	NA	806	Too-Many
TCGA.AG.A025.01A	16	97383	90142216	5646	-0.208	NEUTRAL	NA	806	Too-Many
TCGA.AG.A02X.01A	16	97383	90142216	5534	0.073	NEUTRAL	NA	806	Too-Many
TCGA.AG.A032.01A	16	97383	90142216	5098	0.2502	NEUTRAL	NA	806	Too-Many
TCGA.AA.A02K.01A	16	97384	105729	6	0.0633	NEUTRAL	NA	2	"POLR3K,SNRNP25"
TCGA.AA.A00N.01A	16	110430	239925	33	-0.26	NEUTRAL	NA	9	"HBA1,HBA2,HBM,HBQ1,HBZ,LUC7L,MPG,NPRL3,RHBDF1"
TCGA.AG.3909.01A	16	113543	848690	123	0.3105	NEUTRAL	NA	43	"ARHGDIG,AXIN1,C16orf13,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.AG.3732	16	114534	31937595	10303	0.0024	NEUTRAL	NA	435	Too-Many
TCGA.AZ.4615	16	115071	6488115	1930	-0.0087	NEUTRAL	NA	187	Too-Many
TCGA.AA.A02K.01A	16	135350	704978	132	0.0944	NEUTRAL	NA	27	"ARHGDIG,AXIN1,C16orf13,CAPN15,DECR2,FAM195A,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,MRPL28,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,PRR35,RAB11FIP3,RAB40C,RGS11,TMEM8A,WDR90,WFIKKN1"
TCGA.AG.4009.01A	16	142547	338082	40	-0.3572	NEUTRAL	NA	12	"ARHGDIG,AXIN1,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,NPRL3,PDIA2,RGS11"
TCGA.AA.3862.01A	16	150331	1872245	336	-0.4504	NEUTRAL	NA	73	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGH,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,METRN,MRPL28,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NPRL3,NUBP2,PDIA2,PIGQ,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDL1,RHOT2,RPUSD1,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.AM.5820	16	155357	300640	24	-0.0485	NEUTRAL	NA	8	"HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,NPRL3"
TCGA.AA.A01Q.01A	16	223432	419037	36	-0.1926	NEUTRAL	NA	10	"ARHGDIG,AXIN1,HBA1,HBA2,HBQ1,ITFG3,LUC7L,MRPL28,PDIA2,RGS11"
TCGA.AA.A00N.01A	16	309950	1642130	414	-0.4595	NEUTRAL	NA	56	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,DECR2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,IFT140,ITFG3,JMJD8,LMF1,METRN,MRPL28,MSLN,NARFL,NHLRC4,NME4,PDIA2,PIGQ,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDL1,RHOT2,RPUSD1,SOX8,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.AG.3891.01A	16	422574	1872245	237	-0.0309	NEUTRAL	NA	60	"BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGH,HAGHL,HN1L,IFT140,IGFALS,JMJD8,LMF1,MAPK8IP3,METRN,MRPS34,MSLN,NARFL,NHLRC4,NME3,NME4,NUBP2,PIGQ,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RHBDL1,RHOT2,RPUSD1,SOX8,SPSB3,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.DM.A1D9	16	441808	6520152	1888	0.005	NEUTRAL	NA	171	Too-Many
TCGA.AA.A010.01A	16	475996	541084	7	-0.4118	NEUTRAL	NA	1	RAB11FIP3
TCGA.AA.A01Q.01A	16	475996	848933	69	0.0629	NEUTRAL	NA	25	"C16orf13,CAPN15,CCDC78,CHTF18,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,JMJD8,METRN,MSLN,NARFL,NHLRC4,PIGQ,PRR35,RAB11FIP3,RAB40C,RHBDL1,RHOT2,RPUSD1,STUB1,WDR24,WDR90,WFIKKN1"
TCGA.AA.3939.01A	16	546740	1400761	175	-0.4617	NEUTRAL	NA	38	"BAIAP3,C16orf13,C1QTNF8,CACNA1H,CAPN15,CCDC78,CHTF18,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,JMJD8,LMF1,METRN,MSLN,NARFL,NHLRC4,PIGQ,PRR25,PRR35,RAB11FIP3,RAB40C,RHBDL1,RHOT2,RPUSD1,SOX8,SSTR5,STUB1,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,WDR24,WDR90,WFIKKN1"
TCGA.D5.5540	16	556800	90163274	27016	-0.0158	NEUTRAL	NA	786	Too-Many
TCGA.AM.5820	16	650787	655261	4	0.3209	NEUTRAL	NA	1	RAB40C
TCGA.AA.A02K.01A	16	706275	819412	51	-0.2883	NEUTRAL	NA	13	"CCDC78,FAM173A,FBXL16,HAGHL,JMJD8,METRN,MSLN,NARFL,RHBDL1,RHOT2,STUB1,WDR24,WDR90"
TCGA.F5.6465	16	751872	34197817	10245	0.3262	NEUTRAL	NA	406	Too-Many
TCGA.D5.5541	16	772841	1007460	34	-0.15	NEUTRAL	NA	9	"CCDC78,CHTF18,GNG13,HAGHL,LMF1,MSLN,NARFL,PRR25,RPUSD1"
TCGA.AA.A02K.01A	16	820815	1872838	241	0.118	NEUTRAL	NA	35	"BAIAP3,C16orf91,C1QTNF8,CACNA1H,CCDC154,CHTF18,CLCN7,CRAMP1L,EME2,GNG13,GNPTG,HAGH,HN1L,IFT140,IGFALS,LMF1,MAPK8IP3,MRPS34,NME3,NUBP2,PRR25,PTX4,RPUSD1,SOX8,SPSB3,SSTR5,TELO2,TMEM204,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL"
TCGA.AA.A010.01A	16	855474	942943	10	-0.4336	NEUTRAL	NA	2	"LMF1,PRR25"
TCGA.AG.4009.01A	16	855474	1392490	36	-0.2765	NEUTRAL	NA	12	"BAIAP3,C1QTNF8,CACNA1H,LMF1,PRR25,SOX8,SSTR5,TPSAB1,TPSB2,TPSD1,TPSG1,UBE2I"
TCGA.AG.3909.01A	16	855474	1575881	81	-0.1104	NEUTRAL	NA	21	"BAIAP3,C16orf91,C1QTNF8,CACNA1H,CCDC154,CLCN7,GNPTG,IFT140,LMF1,PRR25,PTX4,SOX8,SSTR5,TELO2,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL"
TCGA.CM.6170	16	1016056	1251280	26	-0.3868	NEUTRAL	NA	5	"C1QTNF8,CACNA1H,LMF1,SOX8,SSTR5"
TCGA.5M.AATE	16	1073551	1273802	23	-0.14	NEUTRAL	NA	4	"C1QTNF8,CACNA1H,SSTR5,TPSG1"
TCGA.AG.A01Y	16	1089948	1836254	110	-0.1441	NEUTRAL	NA	27	"BAIAP3,C16orf91,C1QTNF8,CACNA1H,CCDC154,CLCN7,CRAMP1L,EME2,GNPTG,HN1L,IFT140,MAPK8IP3,MRPS34,NME3,NUBP2,PTX4,SPSB3,SSTR5,TELO2,TMEM204,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL"
TCGA.CK.6747	16	1119945	6858922	2101	-0.0341	NEUTRAL	NA	141	Too-Many
TCGA.D5.5541	16	1234870	6731057	1983	-0.0638	NEUTRAL	NA	139	Too-Many
TCGA.CM.6170	16	1252598	52310526	11877	0.0845	NEUTRAL	NA	420	Too-Many
TCGA.5M.AATE	16	1320592	1692658	69	0.1541	NEUTRAL	NA	13	"BAIAP3,C16orf91,CCDC154,CLCN7,CRAMP1L,GNPTG,IFT140,PTX4,TELO2,TMEM204,TSR3,UBE2I,UNKL"
TCGA.5M.AAT4	16	1335620	6291618	1586	-0.0434	NEUTRAL	NA	134	Too-Many
TCGA.AA.A01Q.01A	16	1363987	2105361	178	-0.2982	NEUTRAL	NA	39	"BAIAP3,C16orf91,CCDC154,CLCN7,CRAMP1L,EME2,FAHD1,GFER,GNPTG,HAGH,HN1L,HS3ST6,IFT140,IGFALS,MAPK8IP3,MEIOB,MRPS34,MSRB1,NDUFB10,NME3,NOXO1,NPW,NTHL1,NUBP2,PTX4,RNF151,RPL3L,RPS2,SLC9A3R2,SPSB3,SYNGR3,TBL3,TELO2,TMEM204,TSC2,TSR3,UBE2I,UNKL,ZNF598"
TCGA.AA.3939.01A	16	1401647	90142216	6215	0.136	NEUTRAL	NA	749	Too-Many
TCGA.F5.6811.01A	16	1403798	13948925	1223	-0.371	NEUTRAL	NA	164	Too-Many
TCGA.AM.5821	16	1404725	90163274	26831	0.0266	NEUTRAL	NA	748	Too-Many
TCGA.AA.3930.01A	16	1411684	14766416	1161	-0.3776	NEUTRAL	NA	169	Too-Many
TCGA.AA.3979	16	1426586	34421700	10143	0.0098	NEUTRAL	NA	382	Too-Many
TCGA.AG.4009.01A	16	1504339	1621360	34	6.00E-04	NEUTRAL	NA	5	"CLCN7,IFT140,PTX4,TELO2,TMEM204"
TCGA.AM.5820	16	1521555	1542686	10	0.2452	NEUTRAL	NA	2	"CLCN7,PTX4"
TCGA.AG.A01W.01A	16	1524237	1642985	24	-0.2369	NEUTRAL	NA	5	"CLCN7,IFT140,PTX4,TELO2,TMEM204"
TCGA.AA.A010.01A	16	1547311	1575881	21	-0.1929	NEUTRAL	NA	2	"IFT140,TELO2"
TCGA.AA.A01Z	16	1585114	2911319	197	0.0854	NEUTRAL	NA	58	"ABCA3,AMDHD2,ATP6V0C,BRICD5,C16orf59,CASKIN1,CCNF,CEMP1,CRAMP1L,DNASE1L2,E4F1,ECI1,EME2,FAHD1,GFER,HAGH,HN1L,HS3ST6,IFT140,IGFALS,KCTD5,MAPK8IP3,MEIOB,MLST8,MRPS34,MSRB1,NDUFB10,NME3,NOXO1,NPW,NTHL1,NTN3,NUBP2,PDPK1,PGP,PKD1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,RAB26,RNF151,RNPS1,RPL3L,RPS2,SLC9A3R2,SPSB3,SRRM2,SYNGR3,TBC1D24,TBL3,TCEB2,TMEM204,TRAF7,TSC2,ZG16B,ZNF598"
TCGA.AM.5820	16	1593842	1765212	36	0.2079	NEUTRAL	NA	5	"CRAMP1L,HN1L,IFT140,MAPK8IP3,TMEM204"
TCGA.AA.A010.01A	16	1604744	1621360	7	-0.4348	NEUTRAL	NA	2	"IFT140,TMEM204"
TCGA.AA.A00L.01A	16	1637891	1884207	29	0.1075	NEUTRAL	NA	13	"CRAMP1L,EME2,FAHD1,HAGH,HN1L,IFT140,IGFALS,MAPK8IP3,MEIOB,MRPS34,NME3,NUBP2,SPSB3"
TCGA.AA.3861.01A	16	1637891	14940396	1039	-0.2132	NEUTRAL	NA	164	Too-Many
TCGA.AG.A01W.01A	16	1645166	1817256	53	0.3729	NEUTRAL	NA	4	"CRAMP1L,HN1L,IFT140,MAPK8IP3"
TCGA.AG.3909.01A	16	1691118	2115469	102	-0.1481	NEUTRAL	NA	27	"CRAMP1L,EME2,FAHD1,GFER,HAGH,HN1L,HS3ST6,IGFALS,MAPK8IP3,MEIOB,MRPS34,MSRB1,NDUFB10,NME3,NOXO1,NPW,NTHL1,NUBP2,RNF151,RPL3L,RPS2,SLC9A3R2,SPSB3,SYNGR3,TBL3,TSC2,ZNF598"
TCGA.AA.A00N.01A	16	1811164	1872829	34	-0.3798	NEUTRAL	NA	8	"EME2,HAGH,IGFALS,MAPK8IP3,MRPS34,NME3,NUBP2,SPSB3"
TCGA.AG.A01W.01A	16	1824209	1933032	17	-0.4038	NEUTRAL	NA	7	"EME2,FAHD1,HAGH,IGFALS,MEIOB,NUBP2,SPSB3"
TCGA.CL.5917	16	1858014	5837834	1155	0.3759	NEUTRAL	NA	112	Too-Many
TCGA.AG.3891.01A	16	1872829	2158206	74	0.2407	NEUTRAL	NA	19	"FAHD1,GFER,HAGH,HS3ST6,MEIOB,MSRB1,NDUFB10,NOXO1,NPW,NTHL1,PKD1,RNF151,RPL3L,RPS2,SLC9A3R2,SYNGR3,TBL3,TSC2,ZNF598"
TCGA.AA.3862.01A	16	1872829	14738207	1005	-0.0438	NEUTRAL	NA	150	Too-Many
TCGA.AM.5820	16	1889820	1946750	25	-0.2483	NEUTRAL	NA	2	"FAHD1,MEIOB"
TCGA.AA.3952	16	1925333	6792418	1913	-0.5136	NEUTRAL	NA	110	Too-Many
TCGA.AG.A01W.01A	16	1934772	1963986	22	0.1579	NEUTRAL	NA	1	HS3ST6
TCGA.5M.AAT5	16	1947258	6739583	1854	0.0174	NEUTRAL	NA	110	Too-Many
TCGA.5M.AATE	16	1947334	6356689	1519	0.1446	NEUTRAL	NA	110	Too-Many
TCGA.AA.A00L.01A	16	1961564	2339428	100	0.1455	NEUTRAL	NA	27	"ABCA3,BRICD5,CASKIN1,DNASE1L2,E4F1,ECI1,GFER,HS3ST6,MLST8,MSRB1,NDUFB10,NOXO1,NPW,NTHL1,PGP,PKD1,RAB26,RNF151,RNPS1,RPL3L,RPS2,SLC9A3R2,SYNGR3,TBL3,TRAF7,TSC2,ZNF598"
TCGA.AA.3509.01A	16	1961564	14041424	1065	-0.144	NEUTRAL	NA	144	Too-Many
TCGA.AZ.4684.01A	16	1961564	20803292	1643	-0.1187	NEUTRAL	NA	195	Too-Many
TCGA.AA.A02K.01A	16	2009589	2018420	12	0.1087	NEUTRAL	NA	3	"NDUFB10,RNF151,RPS2"
TCGA.AA.A02K.01A	16	2023985	2079542	43	-0.1771	NEUTRAL	NA	7	"GFER,NOXO1,NPW,SLC9A3R2,SYNGR3,TBL3,ZNF598"
TCGA.AG.4008	16	2025205	6362228	1503	0.0183	NEUTRAL	NA	104	Too-Many
TCGA.AG.A01W.01A	16	2036113	2161216	52	0.1743	NEUTRAL	NA	8	"GFER,NPW,NTHL1,PKD1,SLC9A3R2,SYNGR3,TSC2,ZNF598"
TCGA.AA.A02K.01A	16	2086294	2220577	59	0.2332	NEUTRAL	NA	6	"NTHL1,PKD1,RAB26,SLC9A3R2,TRAF7,TSC2"
TCGA.AG.4009.01A	16	2087778	2130137	23	0.0598	NEUTRAL	NA	3	"NTHL1,SLC9A3R2,TSC2"
TCGA.AA.A01Q.01A	16	2108727	2124152	12	0.1712	NEUTRAL	NA	1	TSC2
TCGA.AG.3909.01A	16	2120420	2376341	81	0.3091	NEUTRAL	NA	13	"ABCA3,BRICD5,CASKIN1,DNASE1L2,E4F1,ECI1,MLST8,PGP,PKD1,RAB26,RNPS1,TRAF7,TSC2"
TCGA.AA.A01K.01A	16	2127547	84623669	4694	-0.0389	NEUTRAL	NA	645	Too-Many
TCGA.AG.4009.01A	16	2131548	2221503	13	-0.2927	NEUTRAL	NA	4	"PKD1,RAB26,TRAF7,TSC2"
TCGA.AG.A01W.01A	16	2171745	2197005	10	0.2704	NEUTRAL	NA	1	PKD1
TCGA.AA.A01Q.01A	16	2199895	2222428	11	-0.3166	NEUTRAL	NA	2	"RAB26,TRAF7"
TCGA.AA.A02K.01A	16	2221215	2238992	17	-0.3896	NEUTRAL	NA	2	"CASKIN1,TRAF7"
TCGA.AA.A01Q.01A	16	2229617	2482913	58	-0.1932	NEUTRAL	NA	10	"ABCA3,BRICD5,CASKIN1,CCNF,DNASE1L2,E4F1,ECI1,MLST8,PGP,RNPS1"
TCGA.AG.A01W.01A	16	2233052	3840663	327	0.0457	NEUTRAL	NA	61	"ABCA3,AMDHD2,ATP6V0C,BRICD5,C16orf59,C16orf90,CASKIN1,CCDC64B,CCNF,CEMP1,CLDN6,CLDN9,CLUAP1,CREBBP,DNASE1,DNASE1L2,E4F1,ECI1,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KCTD5,KREMEN2,MEFV,MLST8,MMP25,MTRNR2L4,NAA60,NLRC3,NTN3,OR1F1,OR2C1,PAQR4,PDPK1,PGP,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,RNPS1,SLX4,SRRM2,TBC1D24,TCEB2,THOC6,TIGD7,TNFRSF12A,TRAP1,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AG.A01Y	16	2237548	34410568	10020	-0.0493	NEUTRAL	NA	344	Too-Many
TCGA.AA.A02K.01A	16	2240037	2279521	11	0.084	NEUTRAL	NA	5	"BRICD5,CASKIN1,E4F1,MLST8,PGP"
TCGA.AG.3891.01A	16	2279551	4815518	410	0.1834	NEUTRAL	NA	76	"ABCA3,ADCY9,AMDHD2,ANKS3,ATP6V0C,C16orf59,C16orf71,C16orf90,C16orf96,CCDC64B,CCNF,CDIP1,CEMP1,CLDN6,CLDN9,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,DNASE1L2,E4F1,ECI1,FLYWCH1,FLYWCH2,GLIS2,HCFC1R1,HMOX2,IL32,KCTD5,KREMEN2,MEFV,MGRN1,MMP25,MTRNR2L4,NAA60,NLRC3,NMRAL1,NTN3,NUDT16L1,OR1F1,OR2C1,PAM16,PAQR4,PDPK1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,RNPS1,SLX4,SRL,SRRM2,TBC1D24,TCEB2,TFAP4,THOC6,TIGD7,TNFRSF12A,TRAP1,UBALD1,VASN,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF500,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AA.A02K.01A	16	2282181	2286777	6	-0.4318	NEUTRAL	NA	2	"DNASE1L2,E4F1"
TCGA.AG.3605.01A	16	2286776	69418472	144	0.2211	NEUTRAL	NA	532	Too-Many
TCGA.AA.A02K.01A	16	2288324	3273863	199	0.1292	NEUTRAL	NA	39	"ABCA3,AMDHD2,ATP6V0C,C16orf59,CCDC64B,CCNF,CEMP1,CLDN6,CLDN9,DNASE1L2,ECI1,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KCTD5,KREMEN2,MMP25,NTN3,OR1F1,PAQR4,PDPK1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,RNPS1,SRRM2,TBC1D24,TCEB2,THOC6,TNFRSF12A,ZG16B,ZNF200,ZNF205,ZNF213,ZSCAN10"
TCGA.AA.A010.01A	16	2321713	2479399	32	-0.1558	NEUTRAL	NA	2	"ABCA3,CCNF"
TCGA.AA.A02W.01A	16	2328905	18531903	922	0.1945	NEUTRAL	NA	143	Too-Many
TCGA.AG.4009.01A	16	2333135	2367617	16	0.1603	NEUTRAL	NA	1	ABCA3
TCGA.AA.A00N.01A	16	2345593	2479399	16	0.3614	NEUTRAL	NA	2	"ABCA3,CCNF"
TCGA.AM.5820	16	2369070	2645964	31	-0.1481	NEUTRAL	NA	9	"ABCA3,AMDHD2,ATP6V0C,C16orf59,CCNF,CEMP1,NTN3,PDPK1,TBC1D24"
TCGA.AA.3966	16	2369070	3251627	138	0.1208	NEUTRAL	NA	34	"ABCA3,AMDHD2,ATP6V0C,C16orf59,CCDC64B,CCNF,CEMP1,CLDN6,CLDN9,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KCTD5,KREMEN2,MMP25,NTN3,PAQR4,PDPK1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,SRRM2,TBC1D24,TCEB2,THOC6,TNFRSF12A,ZG16B,ZNF205,ZNF213,ZSCAN10"
TCGA.AA.3844	16	2375030	2445479	16	0.2642	NEUTRAL	NA	1	ABCA3
TCGA.AA.3488	16	2443769	6116417	1277	0.0571	NEUTRAL	NA	83	"ADCY9,ALG1,AMDHD2,ANKS3,ATP6V0C,C16orf59,C16orf71,C16orf89,C16orf90,C16orf96,CCDC64B,CCNF,CDIP1,CEMP1,CLDN6,CLDN9,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,EEF2KMT,FLYWCH1,FLYWCH2,GLIS2,GLYR1,HCFC1R1,HMOX2,IL32,KCTD5,KREMEN2,MEFV,MGRN1,MMP25,MTRNR2L4,NAA60,NAGPA,NLRC3,NMRAL1,NTN3,NUDT16L1,OR1F1,OR2C1,PAM16,PAQR4,PDPK1,PKMYT1,PPL,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,RBFOX1,ROGDI,SEC14L5,SEPT12,SLX4,SMIM22,SRL,SRRM2,TBC1D24,TCEB2,TFAP4,THOC6,TIGD7,TNFRSF12A,TRAP1,UBALD1,UBN1,VASN,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF500,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.EI.6883	16	2465989	2845637	31	0.1013	NEUTRAL	NA	13	"AMDHD2,ATP6V0C,C16orf59,CCNF,CEMP1,KCTD5,NTN3,PDPK1,PRSS27,PRSS33,SRRM2,TBC1D24,TCEB2"
TCGA.AG.3909.01A	16	2481093	3366874	149	-0.3165	NEUTRAL	NA	39	"AMDHD2,ATP6V0C,C16orf59,CCDC64B,CCNF,CEMP1,CLDN6,CLDN9,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KCTD5,KREMEN2,MEFV,MMP25,NTN3,OR1F1,PAQR4,PDPK1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,SRRM2,TBC1D24,TCEB2,THOC6,TIGD7,TNFRSF12A,ZG16B,ZNF200,ZNF205,ZNF213,ZNF263,ZNF75A,ZSCAN10"
TCGA.AA.A00L.01A	16	2481093	3556273	149	0.2652	NEUTRAL	NA	47	"AMDHD2,ATP6V0C,C16orf59,C16orf90,CCDC64B,CCNF,CEMP1,CLDN6,CLDN9,CLUAP1,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KCTD5,KREMEN2,MEFV,MMP25,MTRNR2L4,NAA60,NTN3,OR1F1,OR2C1,PAQR4,PDPK1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,SRRM2,TBC1D24,TCEB2,THOC6,TIGD7,TNFRSF12A,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AG.A01N.01A	16	2489687	90142216	5207	0.1582	NEUTRAL	NA	700	Too-Many
TCGA.AG.A011.01A	16	2493612	3071528	65	0.3302	NEUTRAL	NA	25	"AMDHD2,ATP6V0C,C16orf59,CCNF,CEMP1,CLDN6,CLDN9,FLYWCH1,FLYWCH2,KCTD5,KREMEN2,NTN3,PAQR4,PDPK1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,SRRM2,TBC1D24,TCEB2,TNFRSF12A,ZG16B"
TCGA.AA.A00Z.01A	16	2510880	66955959	131	0.1924	NEUTRAL	NA	454	Too-Many
TCGA.A6.3808.01A	16	2546099	4382244	306	-0.3014	NEUTRAL	NA	53	"ADCY9,AMDHD2,ATP6V0C,C16orf90,CCDC64B,CEMP1,CLDN6,CLDN9,CLUAP1,CREBBP,DNASE1,FLYWCH1,FLYWCH2,GLIS2,HCFC1R1,IL32,KCTD5,KREMEN2,MEFV,MMP25,MTRNR2L4,NAA60,NLRC3,OR1F1,OR2C1,PAQR4,PDPK1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,SLX4,SRL,SRRM2,TBC1D24,TCEB2,TFAP4,THOC6,TIGD7,TNFRSF12A,TRAP1,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AG.A00C.01A	16	2569212	3593370	147	0.3421	NEUTRAL	NA	44	"AMDHD2,ATP6V0C,C16orf90,CCDC64B,CEMP1,CLDN6,CLDN9,CLUAP1,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KCTD5,KREMEN2,MEFV,MMP25,MTRNR2L4,NAA60,NLRC3,OR1F1,OR2C1,PAQR4,PDPK1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,SRRM2,TCEB2,THOC6,TIGD7,TNFRSF12A,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AG.4009.01A	16	2607692	2757217	12	-0.0896	NEUTRAL	NA	2	"KCTD5,PDPK1"
TCGA.AA.A010.01A	16	2627367	2806319	17	-0.5061	NEUTRAL	NA	4	"KCTD5,PDPK1,PRSS27,SRRM2"
TCGA.AA.A00O.01A	16	2811545	5122894	309	0.3203	NEUTRAL	NA	71	"ADCY9,ALG1,ANKS3,C16orf71,C16orf89,C16orf90,C16orf96,CCDC64B,CDIP1,CLDN6,CLDN9,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,FLYWCH1,FLYWCH2,GLIS2,GLYR1,HCFC1R1,HMOX2,IL32,KREMEN2,MEFV,MGRN1,MMP25,MTRNR2L4,NAA60,NAGPA,NLRC3,NMRAL1,NUDT16L1,OR1F1,OR2C1,PAM16,PAQR4,PKMYT1,PPL,PRSS21,PRSS22,PRSS33,PRSS41,ROGDI,SEC14L5,SEPT12,SLX4,SMIM22,SRL,SRRM2,TCEB2,TFAP4,THOC6,TIGD7,TNFRSF12A,TRAP1,UBALD1,UBN1,VASN,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF500,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AM.5820	16	2845637	2992113	35	0.2154	NEUTRAL	NA	6	"FLYWCH1,FLYWCH2,PRSS21,PRSS22,PRSS41,ZG16B"
TCGA.AA.A01Q.01A	16	2854896	4322606	199	-0.2307	NEUTRAL	NA	42	"ADCY9,C16orf90,CCDC64B,CLDN6,CLDN9,CLUAP1,CREBBP,DNASE1,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KREMEN2,MEFV,MMP25,MTRNR2L4,NAA60,NLRC3,OR1F1,OR2C1,PAQR4,PKMYT1,PRSS21,PRSS22,PRSS41,SLX4,SRL,TFAP4,THOC6,TIGD7,TNFRSF12A,TRAP1,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AA.A010.01A	16	2867204	2881766	8	-0.2103	NEUTRAL	NA	2	"PRSS21,ZG16B"
TCGA.AG.4009.01A	16	2903042	2998607	12	0.2065	NEUTRAL	NA	3	"FLYWCH1,FLYWCH2,PRSS22"
TCGA.AG.A011.01A	16	3073205	66657260	3324	0.0553	NEUTRAL	NA	423	Too-Many
TCGA.EI.6883	16	3123685	4245908	323	-0.0883	NEUTRAL	NA	24	"ADCY9,C16orf90,CLUAP1,CREBBP,DNASE1,MEFV,MTRNR2L4,NAA60,NLRC3,OR1F1,OR2C1,SLX4,SRL,TIGD7,TRAP1,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.G4.6626	16	3134264	6030332	1117	-0.391	NEUTRAL	NA	52	"ADCY9,ALG1,ANKS3,C16orf71,C16orf89,C16orf90,C16orf96,CDIP1,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,EEF2KMT,GLIS2,GLYR1,HMOX2,MEFV,MGRN1,MTRNR2L4,NAA60,NAGPA,NLRC3,NMRAL1,NUDT16L1,OR1F1,OR2C1,PAM16,PPL,ROGDI,SEC14L5,SEPT12,SLX4,SMIM22,SRL,TFAP4,TIGD7,TRAP1,UBALD1,UBN1,VASN,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF500,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AA.A010.01A	16	3139100	4291947	176	0.1399	NEUTRAL	NA	24	"ADCY9,C16orf90,CLUAP1,CREBBP,DNASE1,MEFV,MTRNR2L4,NAA60,NLRC3,OR1F1,OR2C1,SLX4,SRL,TIGD7,TRAP1,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AG.4009.01A	16	3139842	3169225	11	-0.3028	NEUTRAL	NA	2	"ZNF205,ZSCAN10"
TCGA.AA.3966	16	3252778	5460522	634	-0.1917	NEUTRAL	NA	49	"ADCY9,ALG1,ANKS3,C16orf71,C16orf89,C16orf90,C16orf96,CDIP1,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,EEF2KMT,GLIS2,GLYR1,HMOX2,MEFV,MGRN1,MTRNR2L4,NAA60,NAGPA,NLRC3,NMRAL1,NUDT16L1,OR1F1,OR2C1,PAM16,PPL,ROGDI,SEC14L5,SEPT12,SLX4,SMIM22,SRL,TFAP4,TIGD7,TRAP1,UBALD1,UBN1,VASN,ZNF174,ZNF200,ZNF263,ZNF500,ZNF597,ZNF75A,ZSCAN32"
TCGA.AA.A02K.01A	16	3333768	4642261	213	0.1509	NEUTRAL	NA	29	"ADCY9,C16orf90,C16orf96,CDIP1,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,GLIS2,HMOX2,MTRNR2L4,NAA60,NLRC3,NMRAL1,OR2C1,PAM16,SLX4,SRL,TFAP4,TIGD7,TRAP1,VASN,ZNF174,ZNF263,ZNF597,ZNF75A,ZSCAN32"
TCGA.AG.4009.01A	16	3363024	4311762	128	0.0189	NEUTRAL	NA	17	"ADCY9,C16orf90,CLUAP1,CREBBP,DNASE1,MTRNR2L4,NAA60,NLRC3,OR2C1,SLX4,SRL,TFAP4,TRAP1,ZNF174,ZNF597,ZNF75A,ZSCAN32"
TCGA.AG.3909.01A	16	3367162	3633071	50	0.2906	NEUTRAL	NA	11	"C16orf90,CLUAP1,MTRNR2L4,NAA60,NLRC3,OR2C1,SLX4,ZNF174,ZNF597,ZNF75A,ZSCAN32"
TCGA.F5.6863	16	3538872	6844991	1682	0.1938	NEUTRAL	NA	38	"ADCY9,ALG1,ANKS3,C16orf71,C16orf89,C16orf90,C16orf96,CDIP1,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,EEF2KMT,GLIS2,GLYR1,HMOX2,MGRN1,NAGPA,NLRC3,NMRAL1,NUDT16L1,PAM16,PPL,RBFOX1,ROGDI,SEC14L5,SEPT12,SLX4,SMIM22,SRL,TFAP4,TRAP1,UBALD1,UBN1,VASN,ZNF500"
TCGA.AA.3697	16	3560900	83909040	23958	0	NEUTRAL	NA	572	Too-Many
TCGA.AA.A01D.01A	16	3562334	84797640	4400	-0.0702	NEUTRAL	NA	588	Too-Many
TCGA.AA.A00N.01A	16	3580517	3817670	70	-0.243	NEUTRAL	NA	6	"CLUAP1,CREBBP,DNASE1,NLRC3,SLX4,TRAP1"
TCGA.AG.A00C.01A	16	3594186	4764015	152	0.0065	NEUTRAL	NA	22	"ADCY9,ANKS3,C16orf96,CDIP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,GLIS2,HMOX2,MGRN1,NLRC3,NMRAL1,NUDT16L1,PAM16,SLX4,SRL,TFAP4,TRAP1,UBALD1,VASN"
TCGA.AA.A00A.01A	16	3632316	8891389	240	0.3333	NEUTRAL	NA	39	"ABAT,ADCY9,ALG1,ANKS3,C16orf71,C16orf89,C16orf96,CDIP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,DNASE1,EEF2KMT,GLIS2,GLYR1,HMOX2,METTL22,MGRN1,NAGPA,NMRAL1,NUDT16L1,PAM16,PPL,RBFOX1,ROGDI,SEC14L5,SEPT12,SLX4,SMIM22,SRL,TFAP4,TMEM114,TMEM186,TRAP1,UBALD1,UBN1,VASN,ZNF500"
TCGA.AG.3909.01A	16	3706592	3794847	28	0.0109	NEUTRAL	NA	3	"CREBBP,DNASE1,TRAP1"
TCGA.AA.A029.01A	16	3799565	68110480	3392	-0.2913	NEUTRAL	NA	456	Too-Many
TCGA.AA.3666	16	3896364	6338472	1157	-0.3188	NEUTRAL	NA	32	"ADCY9,ALG1,ANKS3,C16orf71,C16orf89,C16orf96,CDIP1,CORO7,CORO7-PAM16,CREBBP,DNAJA3,EEF2KMT,GLIS2,GLYR1,HMOX2,MGRN1,NAGPA,NMRAL1,NUDT16L1,PAM16,PPL,RBFOX1,ROGDI,SEC14L5,SEPT12,SMIM22,SRL,TFAP4,UBALD1,UBN1,VASN,ZNF500"
TCGA.AA.A00N.01A	16	3929774	4524015	74	-0.3571	NEUTRAL	NA	11	"ADCY9,CORO7,CORO7-PAM16,CREBBP,DNAJA3,GLIS2,NMRAL1,PAM16,SRL,TFAP4,VASN"
TCGA.AG.3909.01A	16	4015794	4310072	17	-0.2401	NEUTRAL	NA	3	"ADCY9,SRL,TFAP4"
TCGA.AA.A00L.01A	16	4163710	4457454	29	0.1772	NEUTRAL	NA	8	"ADCY9,CORO7,CORO7-PAM16,GLIS2,PAM16,SRL,TFAP4,VASN"
TCGA.AG.A01W.01A	16	4182106	4231948	6	-0.4802	NEUTRAL	NA	0	None
TCGA.EI.6883	16	4246438	5075632	213	0.3323	NEUTRAL	NA	26	"ANKS3,C16orf71,C16orf96,CDIP1,CORO7,CORO7-PAM16,DNAJA3,GLIS2,GLYR1,HMOX2,MGRN1,NAGPA,NMRAL1,NUDT16L1,PAM16,PPL,ROGDI,SEC14L5,SEPT12,SMIM22,SRL,TFAP4,UBALD1,UBN1,VASN,ZNF500"
TCGA.AG.A01W.01A	16	4248021	4333154	14	0.143	NEUTRAL	NA	2	"SRL,TFAP4"
TCGA.AG.3909.01A	16	4310419	4383296	7	0.2627	NEUTRAL	NA	2	"GLIS2,TFAP4"
TCGA.AG.A01W.01A	16	4345092	4464028	38	-0.3366	NEUTRAL	NA	5	"CORO7,CORO7-PAM16,GLIS2,PAM16,VASN"
TCGA.AG.3612	16	4395240	70883844	16600	-0.0178	NEUTRAL	NA	492	Too-Many
TCGA.AA.A010.01A	16	4430887	4463258	10	-0.1669	NEUTRAL	NA	3	"CORO7,CORO7-PAM16,VASN"
TCGA.AG.3909.01A	16	4430887	4882725	93	0.2454	NEUTRAL	NA	18	"ANKS3,C16orf71,C16orf96,CDIP1,CORO7,CORO7-PAM16,DNAJA3,GLYR1,HMOX2,MGRN1,NMRAL1,NUDT16L1,ROGDI,SEPT12,SMIM22,UBALD1,VASN,ZNF500"
TCGA.AA.A01Q.01A	16	4430887	4933364	109	-0.2213	NEUTRAL	NA	20	"ANKS3,C16orf71,C16orf96,CDIP1,CORO7,CORO7-PAM16,DNAJA3,GLYR1,HMOX2,MGRN1,NMRAL1,NUDT16L1,PPL,ROGDI,SEPT12,SMIM22,UBALD1,UBN1,VASN,ZNF500"
TCGA.AG.4009.01A	16	4431858	4733171	42	0.0249	NEUTRAL	NA	10	"C16orf96,CDIP1,CORO7,CORO7-PAM16,DNAJA3,HMOX2,MGRN1,NMRAL1,UBALD1,VASN"
TCGA.AA.A01Z	16	4439130	4500121	11	0.0319	NEUTRAL	NA	3	"CORO7,CORO7-PAM16,DNAJA3"
TCGA.A6.3808.01A	16	4445217	5127880	195	0.0225	NEUTRAL	NA	23	"ALG1,ANKS3,C16orf71,C16orf89,C16orf96,CDIP1,CORO7,CORO7-PAM16,DNAJA3,GLYR1,HMOX2,MGRN1,NAGPA,NMRAL1,NUDT16L1,PPL,ROGDI,SEC14L5,SEPT12,SMIM22,UBALD1,UBN1,ZNF500"
TCGA.AG.A01W.01A	16	4495469	4584688	21	0.1606	NEUTRAL	NA	4	"CDIP1,DNAJA3,HMOX2,NMRAL1"
TCGA.AA.A01Z	16	4549582	5494942	295	-0.0151	NEUTRAL	NA	20	"ALG1,ANKS3,C16orf71,C16orf89,C16orf96,CDIP1,EEF2KMT,GLYR1,HMOX2,MGRN1,NAGPA,NUDT16L1,PPL,ROGDI,SEC14L5,SEPT12,SMIM22,UBALD1,UBN1,ZNF500"
TCGA.AA.A00L.01A	16	4559395	8891711	131	0.3154	NEUTRAL	NA	26	"ABAT,ALG1,ANKS3,C16orf71,C16orf89,C16orf96,CDIP1,EEF2KMT,GLYR1,HMOX2,METTL22,MGRN1,NAGPA,NUDT16L1,PMM2,PPL,RBFOX1,ROGDI,SEC14L5,SEPT12,SMIM22,TMEM114,TMEM186,UBALD1,UBN1,ZNF500"
TCGA.AG.A01W.01A	16	4589231	4676193	19	-0.2792	NEUTRAL	NA	3	"C16orf96,MGRN1,UBALD1"
TCGA.AA.A00N.01A	16	4621515	4748400	43	-0.1878	NEUTRAL	NA	5	"ANKS3,C16orf96,MGRN1,NUDT16L1,UBALD1"
TCGA.CK.5914.01A	16	4621515	5057305	139	-0.0967	NEUTRAL	NA	14	"ANKS3,C16orf71,C16orf96,GLYR1,MGRN1,NUDT16L1,PPL,ROGDI,SEC14L5,SEPT12,SMIM22,UBALD1,UBN1,ZNF500"
TCGA.AA.A010.01A	16	4628882	4827760	62	-0.2495	NEUTRAL	NA	8	"ANKS3,C16orf71,C16orf96,MGRN1,NUDT16L1,SEPT12,UBALD1,ZNF500"
TCGA.AA.A02K.01A	16	4643171	4644687	3	-0.4405	NEUTRAL	NA	1	C16orf96
TCGA.AA.A02K.01A	16	4649230	4732784	18	0.0018	NEUTRAL	NA	3	"C16orf96,MGRN1,UBALD1"
TCGA.AG.A01W.01A	16	4692128	13936987	403	-0.1666	NEUTRAL	NA	50	"ABAT,ALG1,ANKS3,ATF7IP2,C16orf71,C16orf72,C16orf89,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EEF2KMT,EMP2,GLYR1,GRIN2A,GSPT1,LITAF,METTL22,MGRN1,NAGPA,NUBP1,NUDT16L1,PMM2,PPL,PRM1,PRM2,PRM3,RBFOX1,RMI2,ROGDI,RSL1D1,SEC14L5,SEPT12,SHISA9,SMIM22,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,UBN1,USP7,ZC3H7A,ZNF500"
TCGA.AA.A02K.01A	16	4733162	4755059	13	-0.3594	NEUTRAL	NA	3	"ANKS3,MGRN1,NUDT16L1"
TCGA.AG.4009.01A	16	4764015	4790172	8	-0.2694	NEUTRAL	NA	2	"ANKS3,C16orf71"
TCGA.AA.A02K.01A	16	4764016	19883132	890	0.2211	NEUTRAL	NA	89	"ABAT,ABCC1,ABCC6,ALG1,ANKS3,ARL6IP1,ATF7IP2,BFAR,C16orf45,C16orf62,C16orf71,C16orf72,C16orf89,CARHSP1,CCP110,CIITA,CLEC16A,CLEC19A,COQ7,CPPED1,DEXI,EEF2KMT,EMP2,ERCC4,FOPNL,GDE1,GLYR1,GPRC5B,GRIN2A,GSPT1,IQCK,ITPRIPL2,KIAA0430,KNOP1,LITAF,METTL22,MKL2,MPV17L,MYH11,NAGPA,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PMM2,PPL,PRM1,PRM2,PRM3,RBFOX1,RMI2,ROGDI,RPS15A,RRN3,RSL1D1,SEC14L5,SEPT12,SHISA9,SMG1,SMIM22,SNN,SNX29,SOCS1,SYT17,TEKT5,TMC5,TMC7,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,UBN1,USP7,XYLT1,ZC3H7A,ZNF500"
TCGA.AG.4009.01A	16	4792997	4827760	10	0.0588	NEUTRAL	NA	3	"C16orf71,SEPT12,ZNF500"
TCGA.AG.3891.01A	16	4861612	12618512	339	0.2248	NEUTRAL	NA	40	"ABAT,ALG1,ATF7IP2,C16orf72,C16orf89,CARHSP1,CIITA,CLEC16A,DEXI,EEF2KMT,EMP2,GLYR1,GRIN2A,GSPT1,LITAF,METTL22,NAGPA,NUBP1,PMM2,PPL,PRM1,PRM2,PRM3,RBFOX1,RMI2,RSL1D1,SEC14L5,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,UBN1,USP7,ZC3H7A"
TCGA.AG.3909.01A	16	4895028	5081697	52	-0.1853	NEUTRAL	NA	5	"GLYR1,NAGPA,PPL,SEC14L5,UBN1"
TCGA.AA.A01I.01A	16	4895028	15813402	496	-0.2608	NEUTRAL	NA	60	"ABAT,ALG1,ATF7IP2,BFAR,C16orf45,C16orf72,C16orf89,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EEF2KMT,EMP2,ERCC4,GLYR1,GRIN2A,GSPT1,KIAA0430,LITAF,METTL22,MKL2,MPV17L,MYH11,NAGPA,NDE1,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PMM2,PPL,PRM1,PRM2,PRM3,RBFOX1,RMI2,RRN3,RSL1D1,SEC14L5,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,UBN1,USP7,ZC3H7A"
TCGA.F5.6812	16	4895037	6782735	1285	-0.0239	NEUTRAL	NA	9	"ALG1,C16orf89,EEF2KMT,GLYR1,NAGPA,PPL,RBFOX1,SEC14L5,UBN1"
TCGA.AG.A00C.01A	16	4918768	4941763	16	0.1803	NEUTRAL	NA	2	"PPL,UBN1"
TCGA.AG.4009.01A	16	4918768	11647347	244	0.0663	NEUTRAL	NA	32	"ABAT,ALG1,ATF7IP2,C16orf72,C16orf89,CARHSP1,CIITA,CLEC16A,DEXI,EEF2KMT,EMP2,GRIN2A,LITAF,METTL22,NAGPA,NUBP1,PMM2,PPL,PRM1,PRM2,PRM3,RBFOX1,RMI2,SEC14L5,SOCS1,TEKT5,TMEM114,TMEM186,TNP2,TVP23A,UBN1,USP7"
TCGA.AA.A00Q.01A	16	4933364	5125342	29	0.0956	NEUTRAL	NA	5	"ALG1,C16orf89,NAGPA,PPL,SEC14L5"
TCGA.AA.A01Q.01A	16	4940135	5083246	24	-0.3136	NEUTRAL	NA	3	"NAGPA,PPL,SEC14L5"
TCGA.AA.A00N.01A	16	4940135	7101985	56	-0.0781	NEUTRAL	NA	7	"ALG1,C16orf89,EEF2KMT,NAGPA,PPL,RBFOX1,SEC14L5"
TCGA.AG.A00C.01A	16	4944421	4960804	9	-0.4835	NEUTRAL	NA	1	PPL
TCGA.AG.A00C.01A	16	5009270	9857024	114	0.0662	NEUTRAL	NA	15	"ABAT,ALG1,C16orf72,C16orf89,CARHSP1,EEF2KMT,GRIN2A,METTL22,NAGPA,PMM2,RBFOX1,SEC14L5,TMEM114,TMEM186,USP7"
TCGA.EI.6883	16	5077451	6692979	1126	-0.1002	NEUTRAL	NA	5	"ALG1,C16orf89,EEF2KMT,NAGPA,RBFOX1"
TCGA.AA.A01Q.01A	16	5094328	15977855	362	-0.0181	NEUTRAL	NA	56	"ABAT,ALG1,ATF7IP2,BFAR,C16orf45,C16orf72,C16orf89,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EEF2KMT,EMP2,ERCC4,FOPNL,GRIN2A,GSPT1,KIAA0430,LITAF,METTL22,MKL2,MPV17L,MYH11,NDE1,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RRN3,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AG.3909.01A	16	5112454	5145487	12	-0.176	NEUTRAL	NA	3	"ALG1,C16orf89,EEF2KMT"
TCGA.AA.A00O.01A	16	5125342	87436491	4419	-0.1178	NEUTRAL	NA	571	Too-Many
TCGA.AA.3811	16	5225216	59325325	13464	0.1697	NEUTRAL	NA	354	Too-Many
TCGA.AA.3866	16	5247683	6597698	1004	0.1854	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3982	16	5247768	6163123	649	0.335	NEUTRAL	NA	1	RBFOX1
TCGA.AF.2692	16	5269252	9083366	2762	-0.0276	NEUTRAL	NA	8	"ABAT,CARHSP1,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.CK.5913	16	5300646	5697394	252	0.3772	NEUTRAL	NA	0	None
TCGA.DM.A1D8	16	5322633	7585141	1807	-0.4629	NEUTRAL	NA	1	RBFOX1
TCGA.D5.6535	16	5361794	5532878	104	-0.0772	NEUTRAL	NA	0	None
TCGA.DM.A28A	16	5376506	6715195	1063	-0.1736	NEUTRAL	NA	1	RBFOX1
TCGA.A6.5661	16	5381052	59192837	13344	-0.3459	NEUTRAL	NA	354	Too-Many
TCGA.AG.3726	16	5381998	6321976	717	-0.0193	NEUTRAL	NA	1	RBFOX1
TCGA.A6.6140	16	5460522	5765073	254	-0.3579	NEUTRAL	NA	0	None
TCGA.F4.6809	16	5464315	90163274	25939	0.0426	NEUTRAL	NA	618	Too-Many
TCGA.AA.3560	16	5483426	5665455	149	0.1246	NEUTRAL	NA	0	None
TCGA.AA.3968	16	5509503	5920510	339	-0.4105	NEUTRAL	NA	0	None
TCGA.AA.A01Z	16	5516061	5872558	307	0.0083	NEUTRAL	NA	0	None
TCGA.D5.6535	16	5539007	5741353	172	-0.4713	NEUTRAL	NA	0	None
TCGA.AZ.4681	16	5576080	62630401	14229	0.0018	NEUTRAL	NA	356	Too-Many
TCGA.A6.3807	16	5588922	6552164	771	-0.0199	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2685	16	5608412	5689603	79	0.0825	NEUTRAL	NA	0	None
TCGA.CK.6748	16	5650597	5723569	54	-0.4446	NEUTRAL	NA	0	None
TCGA.F5.6810	16	5650597	6018603	292	-0.1393	NEUTRAL	NA	0	None
TCGA.CK.5913	16	5703710	5789201	85	-0.2627	NEUTRAL	NA	0	None
TCGA.EI.7002	16	5703710	6270716	444	-0.014	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3896	16	5717323	6610702	722	-0.0251	NEUTRAL	NA	1	RBFOX1
TCGA.CK.6748	16	5725266	5783730	65	-0.0315	NEUTRAL	NA	0	None
TCGA.D5.6535	16	5741463	6177739	357	-0.0621	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2685	16	5747274	6107553	279	-0.3181	NEUTRAL	NA	1	RBFOX1
TCGA.AD.A5EK	16	5752109	6216643	376	-0.4299	NEUTRAL	NA	1	RBFOX1
TCGA.AD.6901	16	5758184	6766823	824	-0.5143	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3947	16	5759754	7896312	1781	-0.4149	NEUTRAL	NA	1	RBFOX1
TCGA.A6.6140	16	5772479	79018165	19613	0.1915	NEUTRAL	NA	518	Too-Many
TCGA.A6.2683	16	5773287	6202205	344	-0.4481	NEUTRAL	NA	1	RBFOX1
TCGA.CK.6748	16	5784106	6311381	404	-0.4511	NEUTRAL	NA	1	RBFOX1
TCGA.AF.6672	16	5805976	6225026	332	-0.4362	NEUTRAL	NA	1	RBFOX1
TCGA.CL.5917	16	5839805	6167330	261	-0.0214	NEUTRAL	NA	1	RBFOX1
TCGA.CK.6746	16	5854166	6297504	326	-0.0321	NEUTRAL	NA	1	RBFOX1
TCGA.CA.5254	16	5858933	5984224	97	-0.1356	NEUTRAL	NA	0	None
TCGA.EF.5830	16	5918206	6897764	805	-0.0512	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3968	16	5923235	78319633	18856	0.0314	NEUTRAL	NA	518	Too-Many
TCGA.AA.3549	16	5931070	6512137	460	-0.3361	NEUTRAL	NA	1	RBFOX1
TCGA.T9.A92H	16	5942215	6112243	130	0.2883	NEUTRAL	NA	1	RBFOX1
TCGA.CM.6678	16	5949301	6876540	768	-0.4694	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3664	16	5951331	6362640	317	-0.0801	NEUTRAL	NA	1	RBFOX1
TCGA.DY.A1DF	16	5969864	6357059	292	0.0311	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A1D0	16	5969926	70901175	15899	-0.0079	NEUTRAL	NA	466	Too-Many
TCGA.CA.5254	16	5986664	6372545	299	0.276	NEUTRAL	NA	1	RBFOX1
TCGA.AA.A01Z	16	6005852	6128519	97	-0.0261	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6586	16	6005852	6377254	288	-0.0211	NEUTRAL	NA	1	RBFOX1
TCGA.F5.6810	16	6020794	90163274	25521	0.2618	NEUTRAL	NA	618	Too-Many
TCGA.CK.5916	16	6030332	6267056	176	0.3254	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3885	16	6046711	6356689	244	-0.0793	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3818	16	6077548	6109220	24	-0.4072	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3560	16	6077548	6835413	654	-0.3008	NEUTRAL	NA	1	RBFOX1
TCGA.DC.6681	16	6085402	90163274	25462	-0.0446	NEUTRAL	NA	618	Too-Many
TCGA.A6.2685	16	6109220	6215041	94	0.0197	NEUTRAL	NA	1	RBFOX1
TCGA.CM.4743	16	6109220	6232038	107	-0.0423	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A1HB	16	6109220	11011727	3157	0.0161	NEUTRAL	NA	16	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,EMP2,GRIN2A,METTL22,NUBP1,PMM2,RBFOX1,TEKT5,TMEM114,TMEM186,TVP23A,USP7"
TCGA.AA.3818	16	6110250	6466251	295	-0.1255	NEUTRAL	NA	1	RBFOX1
TCGA.QG.A5YV	16	6120884	6552266	340	-0.13	NEUTRAL	NA	1	RBFOX1
TCGA.T9.A92H	16	6144647	6180805	33	-0.3422	NEUTRAL	NA	1	RBFOX1
TCGA.EI.6513	16	6155228	6538985	295	-0.0479	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3844	16	6161793	6415496	192	-0.0097	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A28F	16	6162145	6469279	243	-0.0332	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3982	16	6163837	6167330	7	-0.4541	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6166790	6177574	12	0.04445	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3982	16	6167495	6321976	109	0.195	NEUTRAL	NA	1	RBFOX1
TCGA.CL.5917	16	6167495	69228851	15547	0.3693	NEUTRAL	NA	440	Too-Many
TCGA.D5.6535	16	6180374	6253877	44	-0.397	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6182614	6224659	24	0.27955	NEUTRAL	NA	1	RBFOX1
TCGA.D5.6926	16	6188503	6578168	293	-0.4845	NEUTRAL	NA	1	RBFOX1
TCGA.EI.6512	16	6191061	6570963	284	-0.1488	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3522	16	6191061	90163274	25378	-0.0111	NEUTRAL	NA	618	Too-Many
TCGA.A6.2685	16	6215487	6408153	145	-0.3961	NEUTRAL	NA	1	RBFOX1
TCGA.AD.A5EK	16	6221275	6264036	19	-0.0622	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6225026	6308163	54	-0.27215	NEUTRAL	NA	1	RBFOX1
TCGA.AG.A026	16	6231875	6973048	630	-0.4468	NEUTRAL	NA	1	RBFOX1
TCGA.AF.6672	16	6231875	15661813	4775	-0.0202	NEUTRAL	NA	49	"ABAT,ATF7IP2,BFAR,C16orf45,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,GRIN2A,GSPT1,LITAF,METTL22,MKL2,MPV17L,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RRN3,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AG.3898	16	6238958	6313107	54	-0.2577	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3518	16	6250970	6462230	176	-0.0498	NEUTRAL	NA	1	RBFOX1
TCGA.CK.5916	16	6267863	6802377	473	-0.0209	NEUTRAL	NA	1	RBFOX1
TCGA.AY.A8YK	16	6275458	6285090	10	-0.2	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3492	16	6275458	70836369	15746	0.0035	NEUTRAL	NA	465	Too-Many
TCGA.DC.4749	16	6291018	6464447	159	-0.0398	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3949	16	6291018	6464893	160	-0.5055	NEUTRAL	NA	1	RBFOX1
TCGA.AY.A8YK	16	6291018	6739583	396	0.3426	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6626	16	6301107	6357059	53	-0.4064	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3488	16	6305101	6355299	44	-0.0255	NEUTRAL	NA	1	RBFOX1
TCGA.CK.6746	16	6306113	6408153	89	-0.0213	NEUTRAL	NA	1	RBFOX1
TCGA.AZ.6605	16	6306988	6415895	89	-0.2953	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6310	16	6307708	6385881	63	-0.0068	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6309615	6331740	15	0.21175	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2678	16	6310232	51080213	9750	-0.0125	NEUTRAL	NA	280	Too-Many
TCGA.AA.3956	16	6312951	6356689	34	-0.1403	NEUTRAL	NA	1	RBFOX1
TCGA.CM.5860	16	6313107	6382433	53	-0.2244	NEUTRAL	NA	1	RBFOX1
TCGA.AD.A5EK	16	6330855	6396372	59	-0.2518	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3726	16	6330855	6457069	115	-0.3792	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3982	16	6330855	6902584	502	-0.1598	NEUTRAL	NA	1	RBFOX1
TCGA.CM.5348	16	6334990	6478897	128	-0.4145	NEUTRAL	NA	1	RBFOX1
TCGA.AA.A02O	16	6334990	6564547	195	-0.2979	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3877	16	6337518	6782735	406	-0.0258	NEUTRAL	NA	1	RBFOX1
TCGA.A6.6648	16	6337760	6632887	252	-0.3617	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2681	16	6340644	6420925	71	-0.2499	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3848	16	6340644	6485237	123	-0.2058	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6344504	6582545	197	0.02735	NEUTRAL	NA	1	RBFOX1
TCGA.A6.4105	16	6344587	6392825	42	-0.4763	NEUTRAL	NA	1	RBFOX1
TCGA.AZ.6606	16	6354918	6534772	146	-0.0271	NEUTRAL	NA	1	RBFOX1
TCGA.AH.6644	16	6356689	6469279	103	-0.1697	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3956	16	6357059	6531617	139	-0.5051	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3885	16	6357059	6591470	205	-0.513	NEUTRAL	NA	1	RBFOX1
TCGA.5M.AATE	16	6369135	90163274	25275	0.1652	NEUTRAL	NA	618	Too-Many
TCGA.A6.6782	16	6380695	6512137	112	-0.3401	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6310	16	6387347	6408153	21	-0.3955	NEUTRAL	NA	1	RBFOX1
TCGA.AY.6386	16	6387347	90163274	25252	-0.0339	NEUTRAL	NA	618	Too-Many
TCGA.AA.3869	16	6391873	6931013	473	-0.5053	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3688	16	6392350	6903126	449	-0.2009	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3713	16	6393039	6478897	73	-0.4873	NEUTRAL	NA	1	RBFOX1
TCGA.CA.5796	16	6396372	90163274	25209	0.0225	NEUTRAL	NA	618	Too-Many
TCGA.AG.3742	16	6413743	6549888	108	-0.0519	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2685	16	6413743	6710468	267	0.2469	NEUTRAL	NA	1	RBFOX1
TCGA.DY.A1DD	16	6415496	90163274	25233	-0.0083	NEUTRAL	NA	618	Too-Many
TCGA.AA.3844	16	6415895	6531617	92	0.2669	NEUTRAL	NA	1	RBFOX1
TCGA.A6.4105	16	6417176	6427825	18	-0.4233	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3966	16	6417205	6556441	112	-0.1945	NEUTRAL	NA	1	RBFOX1
TCGA.AZ.6605	16	6417717	6604181	162	-0.4771	NEUTRAL	NA	1	RBFOX1
TCGA.CK.6751	16	6417717	6636604	186	-0.0356	NEUTRAL	NA	1	RBFOX1
TCGA.CA.6715	16	6417717	90163274	25118	-0.0156	NEUTRAL	NA	618	Too-Many
TCGA.CM.5860	16	6421228	6585694	133	-0.2563	NEUTRAL	NA	1	RBFOX1
TCGA.EI.7002	16	6421228	6865107	385	-0.0308	NEUTRAL	NA	1	RBFOX1
TCGA.A6.6142	16	6425580	14709857	4580	-0.024	NEUTRAL	NA	37	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,GRIN2A,GSPT1,LITAF,METTL22,MKL2,NUBP1,PARN,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AZ.6599	16	6428238	90163274	25223	-0.0458	NEUTRAL	NA	618	Too-Many
TCGA.DY.A1DF	16	6431933	6731057	259	-0.0239	NEUTRAL	NA	1	RBFOX1
TCGA.AU.6004	16	6439861	6576391	102	-0.3207	NEUTRAL	NA	1	RBFOX1
TCGA.5M.AAT4	16	6448437	6523141	58	-0.1024	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3592	16	6456558	6570963	88	-0.4436	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3726	16	6458442	6481606	20	0.0042	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3684	16	6463705	6559254	71	-0.2133	NEUTRAL	NA	1	RBFOX1
TCGA.AZ.5403	16	6463705	6758094	262	-0.3359	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3949	16	6466251	6496332	23	0.2095	NEUTRAL	NA	1	RBFOX1
TCGA.SS.A7HO	16	6469279	6516904	33	-0.0325	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3713	16	6481457	6646539	143	-0.0427	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3679	16	6481457	6685321	193	-0.152	NEUTRAL	NA	1	RBFOX1
TCGA.CM.5348	16	6481457	6981821	438	0.2522	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2675	16	6487548	6552266	49	-0.2651	NEUTRAL	NA	1	RBFOX1
TCGA.AY.6196	16	6489262	6789365	271	-0.4511	NEUTRAL	NA	1	RBFOX1
TCGA.AA.A02Y	16	6491191	6572048	57	0.0483	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3511	16	6491297	78454521	18453	-0.0028	NEUTRAL	NA	518	Too-Many
TCGA.CM.5861	16	6495490	6619914	103	-0.0389	NEUTRAL	NA	1	RBFOX1
TCGA.CK.6748	16	6496332	6581745	63	-0.3885	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3949	16	6502764	6658686	145	-0.4495	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3848	16	6505290	6512732	8	-0.0511	NEUTRAL	NA	1	RBFOX1
TCGA.CK.5913	16	6508154	6560525	40	-0.2904	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2686	16	6509008	6653898	133	-0.2023	NEUTRAL	NA	1	RBFOX1
TCGA.AH.6903	16	6512137	90163274	25100	-0.0044	NEUTRAL	NA	618	Too-Many
TCGA.AA.3549	16	6512732	75898713	16995	0.0373	NEUTRAL	NA	510	Too-Many
TCGA.AG.A02N	16	6516904	71065310	15606	-0.0011	NEUTRAL	NA	466	Too-Many
TCGA.AA.3518	16	6531428	6564547	34	-0.0241	NEUTRAL	NA	1	RBFOX1
TCGA.DC.6155	16	6531617	6607677	79	-0.4588	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3844	16	6534368	6663391	130	-0.4657	NEUTRAL	NA	1	RBFOX1
TCGA.A6.5659	16	6534368	6800960	238	-0.181	NEUTRAL	NA	1	RBFOX1
TCGA.D5.5539	16	6534601	6583487	50	-0.3552	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A28F	16	6547043	6744218	190	-0.0302	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3666	16	6548831	6699354	158	-0.3155	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3955	16	6550757	6744218	181	0.1331	NEUTRAL	NA	1	RBFOX1
TCGA.F5.6464	16	6552164	6627458	73	-0.4554	NEUTRAL	NA	1	RBFOX1
TCGA.A6.3807	16	6552266	6597420	51	-0.4767	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3728	16	6556053	7093810	443	-0.3267	NEUTRAL	NA	1	RBFOX1
TCGA.SS.A7HO	16	6559254	6658686	104	0.0049	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3684	16	6560525	70836369	15519	0.1754	NEUTRAL	NA	465	Too-Many
TCGA.DM.A1D9	16	6564333	90163274	25089	-0.0104	NEUTRAL	NA	618	Too-Many
TCGA.EI.6509	16	6564547	6591470	35	-0.0628	NEUTRAL	NA	1	RBFOX1
TCGA.CA.5254	16	6570963	26807421	7463	0.2649	NEUTRAL	NA	130	Too-Many
TCGA.AG.3592	16	6572048	6591470	32	0.0197	NEUTRAL	NA	1	RBFOX1
TCGA.DC.6154	16	6572048	6758433	184	0.0374	NEUTRAL	NA	1	RBFOX1
TCGA.AY.6197	16	6576200	13750285	4046	-0.0196	NEUTRAL	NA	34	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,GRIN2A,GSPT1,LITAF,METTL22,NUBP1,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AU.6004	16	6577629	6610702	41	0.0783	NEUTRAL	NA	1	RBFOX1
TCGA.AA.A022	16	6585645	6610702	30	-0.0176	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6585694	6586657	6	-0.48195	NEUTRAL	NA	1	RBFOX1
TCGA.4N.A93T	16	6586366	6813286	222	-0.0432	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6586875	6595897	9	0.34355	NEUTRAL	NA	1	RBFOX1
TCGA.D5.6540	16	6587246	90163274	25046	-0.0134	NEUTRAL	NA	618	Too-Many
TCGA.A6.2681	16	6591470	6756337	149	-0.0255	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6596180	6611882	15	-0.38485	NEUTRAL	NA	1	RBFOX1
TCGA.AA.A01Z	16	6606328	6678339	76	0.0378	NEUTRAL	NA	1	RBFOX1
TCGA.CK.5913	16	6606328	6710468	96	-0.0276	NEUTRAL	NA	1	RBFOX1
TCGA.AZ.6605	16	6606328	7041468	360	-0.1585	NEUTRAL	NA	1	RBFOX1
TCGA.D5.6920	16	6607677	6708811	91	-0.38	NEUTRAL	NA	1	RBFOX1
TCGA.AU.6004	16	6611882	6807673	183	-0.4723	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	6618259	6692595	78	0.22535	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A28K	16	6618259	70842096	15422	-0.0103	NEUTRAL	NA	466	Too-Many
TCGA.G4.6323	16	6619914	6665696	52	0.0072	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3887	16	6619914	90163274	24969	-0.0236	NEUTRAL	NA	618	Too-Many
TCGA.A6.2679	16	6621231	90163274	25030	0.1933	NEUTRAL	NA	618	Too-Many
TCGA.AG.3883	16	6626498	7190896	469	-0.051	NEUTRAL	NA	1	RBFOX1
TCGA.AY.A71X	16	6626498	57780155	12004	-0.0463	NEUTRAL	NA	337	Too-Many
TCGA.CK.6748	16	6632614	6698817	74	-0.0192	NEUTRAL	NA	1	RBFOX1
TCGA.F5.6464	16	6632614	6828219	202	-0.0502	NEUTRAL	NA	1	RBFOX1
TCGA.AZ.4614	16	6635105	78905502	18585	-0.1356	NEUTRAL	NA	518	Too-Many
TCGA.CK.5912	16	6636119	6925780	252	-0.0204	NEUTRAL	NA	1	RBFOX1
TCGA.F4.6856	16	6646972	78197910	18190	-0.0009	NEUTRAL	NA	518	Too-Many
TCGA.AA.3841	16	6649115	6692595	48	-0.3973	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3842	16	6653812	11065306	2789	0.0575	NEUTRAL	NA	18	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,DEXI,EMP2,GRIN2A,METTL22,NUBP1,PMM2,RBFOX1,TEKT5,TMEM114,TMEM186,TVP23A,USP7"
TCGA.AG.3898	16	6658311	6755678	86	-0.004	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3949	16	6663391	90163274	24995	0.0446	NEUTRAL	NA	618	Too-Many
TCGA.CM.6163	16	6666819	6699354	32	-0.1627	NEUTRAL	NA	1	RBFOX1
TCGA.A6.3807	16	6667554	9101608	1700	-0.3978	NEUTRAL	NA	8	"ABAT,CARHSP1,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.AG.4015	16	6670612	78901768	18714	0.0032	NEUTRAL	NA	518	Too-Many
TCGA.D5.6926	16	6670612	90163274	24965	0.0015	NEUTRAL	NA	618	Too-Many
TCGA.AZ.4616	16	6675579	6820959	140	0.1258	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3846	16	6675579	6846270	156	-0.504	NEUTRAL	NA	1	RBFOX1
TCGA.CM.5862	16	6675912	7033747	283	-0.1325	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2675	16	6682150	7107355	308	-0.1984	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2674	16	6682150	7132742	339	-0.3952	NEUTRAL	NA	1	RBFOX1
TCGA.QG.A5Z1	16	6682202	27376909	7566	-0.013	NEUTRAL	NA	134	Too-Many
TCGA.A6.6648	16	6684027	23280054	6124	-0.0212	NEUTRAL	NA	109	Too-Many
TCGA.EI.6509	16	6692595	86770923	24090	-0.0132	NEUTRAL	NA	566	Too-Many
TCGA.AA.3850	16	6692979	6774695	74	-0.28365	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3841	16	6692979	6960775	226	0.0459	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3592	16	6692979	90163274	24981	0.2626	NEUTRAL	NA	618	Too-Many
TCGA.EI.6512	16	6697124	6734597	30	-0.3372	NEUTRAL	NA	1	RBFOX1
TCGA.DY.A1DG	16	6697561	21309964	5825	-0.0214	NEUTRAL	NA	94	"ABAT,ABCC1,ABCC6,ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,ATF7IP2,BFAR,C16orf45,C16orf62,C16orf72,CARHSP1,CCP110,CIITA,CLEC16A,CLEC19A,COQ7,CPPED1,CRYM,DCUN1D3,DEXI,DNAH3,EMP2,ERCC4,ERI2,FOPNL,GDE1,GP2,GPR139,GPRC5B,GRIN2A,GSPT1,IQCK,ITPRIPL2,KIAA0430,KNOP1,LITAF,LOC81691,LYRM1,METTL22,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,NUBP1,PARN,PDILT,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RPS15A,RRN3,RSL1D1,SHISA9,SMG1,SNN,SNX29,SOCS1,SYT17,TEKT5,THUMPD1,TMC5,TMC7,TMEM114,TMEM159,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,UMOD,USP7,XYLT1,ZC3H7A,ZP2"
TCGA.AF.6655	16	6698817	22421320	5904	0.1942	NEUTRAL	NA	105	Too-Many
TCGA.EI.6514	16	6699260	7144122	334	-0.4707	NEUTRAL	NA	1	RBFOX1
TCGA.DY.A1H8	16	6699260	29230194	7962	0.0027	NEUTRAL	NA	160	Too-Many
TCGA.F5.6864	16	6699354	90163274	24939	-0.0164	NEUTRAL	NA	618	Too-Many
TCGA.AA.A022	16	6706075	6792418	83	-0.0225	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2686	16	6706075	57406018	11794	0	NEUTRAL	NA	325	Too-Many
TCGA.D5.6920	16	6708995	90163274	24925	-0.01	NEUTRAL	NA	618	Too-Many
TCGA.A6.2685	16	6710940	6737911	24	-0.3572	NEUTRAL	NA	1	RBFOX1
TCGA.EI.6883	16	6712185	9813548	2090	-0.0785	NEUTRAL	NA	9	"ABAT,C16orf72,CARHSP1,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.A6.6782	16	6717742	78916838	18675	0.0338	NEUTRAL	NA	518	Too-Many
TCGA.G4.6323	16	6730940	90163274	24962	0.0622	NEUTRAL	NA	618	Too-Many
TCGA.AU.3779	16	6734550	29851737	7993	-0.4012	NEUTRAL	NA	175	Too-Many
TCGA.D5.6536	16	6735136	6748741	10	-0.0099	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2685	16	6739583	90163274	24883	0.3408	NEUTRAL	NA	618	Too-Many
TCGA.QG.A5YV	16	6739583	90163274	24787	-0.0696	NEUTRAL	NA	618	Too-Many
TCGA.AY.A8YK	16	6744218	6835413	99	-0.1997	NEUTRAL	NA	1	RBFOX1
TCGA.SS.A7HO	16	6744218	6846270	105	-0.0555	NEUTRAL	NA	1	RBFOX1
TCGA.BM.6198	16	6744218	70930636	15380	0.00105	NEUTRAL	NA	466	Too-Many
TCGA.A6.5656	16	6755678	78822568	18524	-0.0105	NEUTRAL	NA	518	Too-Many
TCGA.F4.6808	16	6758379	21389969	5762	-0.026	NEUTRAL	NA	94	"ABAT,ABCC1,ABCC6,ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,ATF7IP2,BFAR,C16orf45,C16orf62,C16orf72,CARHSP1,CCP110,CIITA,CLEC16A,CLEC19A,COQ7,CPPED1,CRYM,DCUN1D3,DEXI,DNAH3,EMP2,ERCC4,ERI2,FOPNL,GDE1,GP2,GPR139,GPRC5B,GRIN2A,GSPT1,IQCK,ITPRIPL2,KIAA0430,KNOP1,LITAF,LOC81691,LYRM1,METTL22,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,NUBP1,PARN,PDILT,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RPS15A,RRN3,RSL1D1,SHISA9,SMG1,SNN,SNX29,SOCS1,SYT17,TEKT5,THUMPD1,TMC5,TMC7,TMEM114,TMEM159,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,UMOD,USP7,XYLT1,ZC3H7A,ZP2"
TCGA.AZ.5403	16	6758379	90163274	24899	0.187	NEUTRAL	NA	618	Too-Many
TCGA.CK.6751	16	6766823	90163274	24782	-0.0083	NEUTRAL	NA	618	Too-Many
TCGA.AD.6901	16	6767191	90163274	24866	0	NEUTRAL	NA	618	Too-Many
TCGA.AA.A02Y	16	6774695	6808029	34	-0.0038	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3875	16	6774695	34441794	8192	0.0273	NEUTRAL	NA	253	Too-Many
TCGA.D5.5539	16	6778199	6827653	55	-0.3355	NEUTRAL	NA	1	RBFOX1
TCGA.G5.6233	16	6778689	90163274	24913	-0.1615	NEUTRAL	NA	618	Too-Many
TCGA.EI.6512	16	6778779	6900307	95	-0.4301	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A28A	16	6778779	90163274	24878	-0.0244	NEUTRAL	NA	618	Too-Many
TCGA.AA.3850	16	6781829	6798094	15	0.13815	NEUTRAL	NA	1	RBFOX1
TCGA.AA.A01R	16	6782278	90163274	24889	-0.0104	NEUTRAL	NA	618	Too-Many
TCGA.CI.6623	16	6782735	90163274	24874	0.0087	NEUTRAL	NA	618	Too-Many
TCGA.F5.6812	16	6789365	7073998	203	-0.4194	NEUTRAL	NA	1	RBFOX1
TCGA.AY.6196	16	6789940	21605966	5676	-0.0632	NEUTRAL	NA	95	"ABAT,ABCC1,ABCC6,ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,ATF7IP2,BFAR,C16orf45,C16orf62,C16orf72,CARHSP1,CCP110,CIITA,CLEC16A,CLEC19A,COQ7,CPPED1,CRYM,DCUN1D3,DEXI,DNAH3,EMP2,ERCC4,ERI2,FOPNL,GDE1,GP2,GPR139,GPRC5B,GRIN2A,GSPT1,IQCK,ITPRIPL2,KIAA0430,KNOP1,LITAF,LOC81691,LYRM1,METTL22,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NPIPB3,NTAN1,NUBP1,PARN,PDILT,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RPS15A,RRN3,RSL1D1,SHISA9,SMG1,SNN,SNX29,SOCS1,SYT17,TEKT5,THUMPD1,TMC5,TMC7,TMEM114,TMEM159,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,UMOD,USP7,XYLT1,ZC3H7A,ZP2"
TCGA.F4.6460	16	6793932	6813286	28	-0.0451	NEUTRAL	NA	1	RBFOX1
TCGA.CM.5860	16	6793932	6813911	30	-0.4198	NEUTRAL	NA	1	RBFOX1
TCGA.AD.6899	16	6793932	90163274	24828	-0.0673	NEUTRAL	NA	618	Too-Many
TCGA.F5.6813	16	6796803	6887688	67	-0.4692	NEUTRAL	NA	1	RBFOX1
TCGA.G5.6572	16	6796803	90163274	24851	-0.0072	NEUTRAL	NA	618	Too-Many
TCGA.G4.6314	16	6796865	6887688	65	-0.2881	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A28F	16	6798094	6927384	98	0.021	NEUTRAL	NA	1	RBFOX1
TCGA.EI.6513	16	6802326	6811304	15	0.0387	NEUTRAL	NA	1	RBFOX1
TCGA.A6.5659	16	6802326	90163274	23019	0.374	NEUTRAL	NA	618	Too-Many
TCGA.AA.3850	16	6805912	6926396	91	0.12785	NEUTRAL	NA	1	RBFOX1
TCGA.AU.6004	16	6807705	78843983	18443	-0.0597	NEUTRAL	NA	518	Too-Many
TCGA.AY.5543	16	6808012	6916450	83	-0.0146	NEUTRAL	NA	1	RBFOX1
TCGA.CK.5916	16	6810811	6814458	10	-0.125	NEUTRAL	NA	1	RBFOX1
TCGA.AD.A5EK	16	6810811	6910061	74	-0.4459	NEUTRAL	NA	1	RBFOX1
TCGA.F4.6805	16	6812647	90163274	24821	-0.0098	NEUTRAL	NA	618	Too-Many
TCGA.CM.5860	16	6814458	6890528	40	-0.022	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A28H	16	6814458	62028274	13014	-0.0017	NEUTRAL	NA	356	Too-Many
TCGA.EI.6513	16	6815337	7006427	135	-0.0237	NEUTRAL	NA	1	RBFOX1
TCGA.AF.2689	16	6817374	90163274	24850	0.2595	NEUTRAL	NA	618	Too-Many
TCGA.NH.A50U	16	6817374	90163274	24865	-0.4433	NEUTRAL	NA	618	Too-Many
TCGA.AA.3821	16	6820897	70842096	15237	-0.0267	NEUTRAL	NA	466	Too-Many
TCGA.AZ.4616	16	6824822	7132742	207	-0.3822	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3713	16	6828219	90163274	24845	-0.0266	NEUTRAL	NA	618	Too-Many
TCGA.CK.6748	16	6833885	71018470	15286	-0.0206	NEUTRAL	NA	466	Too-Many
TCGA.CM.4752	16	6835389	7132998	200	-0.071	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3877	16	6835389	90163274	24849	0.0007	NEUTRAL	NA	618	Too-Many
TCGA.AA.3679	16	6835677	6950106	78	-0.1252	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6310	16	6835677	6999202	114	-0.4683	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3560	16	6835677	90163274	24852	0.1549	NEUTRAL	NA	618	Too-Many
TCGA.AH.6644	16	6840764	6969294	100	-0.4607	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3893	16	6844991	70850892	15110	0.0091	NEUTRAL	NA	466	Too-Many
TCGA.AA.A02O	16	6844991	90163274	24829	-0.0266	NEUTRAL	NA	618	Too-Many
TCGA.AA.3955	16	6846270	7047356	138	-0.1144	NEUTRAL	NA	1	RBFOX1
TCGA.D5.5539	16	6858922	6959036	79	0.277	NEUTRAL	NA	1	RBFOX1
TCGA.AA.A02Y	16	6858922	7213616	283	0.0282	NEUTRAL	NA	1	RBFOX1
TCGA.5M.AAT4	16	6858922	12655967	3295	-0.0634	NEUTRAL	NA	32	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,DEXI,EMP2,GRIN2A,GSPT1,LITAF,METTL22,NUBP1,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RSL1D1,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AA.3966	16	6858922	35205716	8168	-0.2122	NEUTRAL	NA	253	Too-Many
TCGA.G4.6586	16	6858922	78607348	18344	-0.0331	NEUTRAL	NA	518	Too-Many
TCGA.CK.5916	16	6859491	6914357	44	0.0096	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3518	16	6864818	18727231	4941	-0.0067	NEUTRAL	NA	60	"ABAT,ABCC1,ABCC6,ATF7IP2,BFAR,C16orf45,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,FOPNL,GRIN2A,GSPT1,KIAA0430,LITAF,METTL22,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RRN3,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,XYLT1,ZC3H7A"
TCGA.AA.A03F	16	6864818	85927078	23223	-0.0052	NEUTRAL	NA	561	Too-Many
TCGA.AG.3898	16	6865107	90163274	24749	0.0235	NEUTRAL	NA	618	Too-Many
TCGA.F5.6863	16	6867750	90163274	24798	0.2158	NEUTRAL	NA	618	Too-Many
TCGA.DY.A1DF	16	6868510	85978124	23278	0	NEUTRAL	NA	562	Too-Many
TCGA.D5.5541	16	6868510	90163274	24829	-0.034	NEUTRAL	NA	618	Too-Many
TCGA.AA.3664	16	6868872	7366368	412	-0.0958	NEUTRAL	NA	1	RBFOX1
TCGA.AF.4110	16	6868872	69045861	14957	0	NEUTRAL	NA	436	Too-Many
TCGA.AA.A01V	16	6868872	90163274	24809	0.0216	NEUTRAL	NA	618	Too-Many
TCGA.AA.3666	16	6873787	7183344	237	-0.2947	NEUTRAL	NA	1	RBFOX1
TCGA.F4.6570	16	6876457	90163274	24835	-0.0362	NEUTRAL	NA	618	Too-Many
TCGA.AH.6544	16	6876854	22421320	5752	-0.0037	NEUTRAL	NA	105	Too-Many
TCGA.AZ.6607	16	6876854	90163274	24774	-0.1851	NEUTRAL	NA	618	Too-Many
TCGA.CM.6678	16	6876854	90163274	24777	-0.1556	NEUTRAL	NA	618	Too-Many
TCGA.AG.4008	16	6882473	90163274	24668	0.0297	NEUTRAL	NA	618	Too-Many
TCGA.G4.6314	16	6888834	10304270	2273	0.0177	NEUTRAL	NA	10	"ABAT,C16orf72,CARHSP1,GRIN2A,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.F5.6813	16	6888834	50900310	9155	0.0025	NEUTRAL	NA	280	Too-Many
TCGA.F5.6464	16	6890528	6969670	81	-0.4606	NEUTRAL	NA	1	RBFOX1
TCGA.CM.5860	16	6891364	7033747	110	-0.3687	NEUTRAL	NA	1	RBFOX1
TCGA.A6.6137	16	6891497	55225082	10860	-0.0076	NEUTRAL	NA	291	Too-Many
TCGA.AA.A022	16	6892506	90163274	24755	-0.019	NEUTRAL	NA	618	Too-Many
TCGA.AG.3881	16	6894474	90163274	24826	-0.2715	NEUTRAL	NA	618	Too-Many
TCGA.D5.6536	16	6897635	90163274	24823	-0.0169	NEUTRAL	NA	618	Too-Many
TCGA.AA.3982	16	6903080	7376800	390	0.2541	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2672	16	6905071	70883844	15166	-0.2139	NEUTRAL	NA	466	Too-Many
TCGA.AA.3688	16	6905071	90163274	24819	0.2301	NEUTRAL	NA	618	Too-Many
TCGA.DC.6154	16	6909570	6931013	21	0.0781	NEUTRAL	NA	1	RBFOX1
TCGA.CM.6163	16	6909570	16049632	4302	-0.0045	NEUTRAL	NA	54	"ABAT,ABCC1,ATF7IP2,BFAR,C16orf45,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,FOPNL,GRIN2A,GSPT1,KIAA0430,LITAF,METTL22,MKL2,MPV17L,MYH11,NDE1,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RRN3,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AA.A01Z	16	6914357	7284058	310	-0.0141	NEUTRAL	NA	1	RBFOX1
TCGA.AY.5543	16	6925780	34197817	7977	0.3568	NEUTRAL	NA	253	Too-Many
TCGA.AG.3885	16	6925780	62877063	13212	0.2934	NEUTRAL	NA	356	Too-Many
TCGA.CM.5861	16	6925780	70836369	15187	-0.0034	NEUTRAL	NA	465	Too-Many
TCGA.AA.3543	16	6925780	78544423	18208	0.0211	NEUTRAL	NA	518	Too-Many
TCGA.AY.4070	16	6926319	90163274	24666	-0.1017	NEUTRAL	NA	618	Too-Many
TCGA.A6.4107	16	6926396	70990984	15231	0.2339	NEUTRAL	NA	466	Too-Many
TCGA.AA.3850	16	6927384	6950274	23	-0.48825	NEUTRAL	NA	1	RBFOX1
TCGA.QG.A5YX	16	6927911	90163274	24595	-0.0873	NEUTRAL	NA	618	Too-Many
TCGA.AA.3866	16	6928069	9693675	1823	0.2229	NEUTRAL	NA	9	"ABAT,C16orf72,CARHSP1,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.F4.6855	16	6930541	90163274	24723	0.0022	NEUTRAL	NA	618	Too-Many
TCGA.AA.3956	16	6934453	7093810	101	-0.178	NEUTRAL	NA	1	RBFOX1
TCGA.CK.5913	16	6934453	7109008	105	-0.0471	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3685	16	6934453	90163274	24796	-0.2124	NEUTRAL	NA	618	Too-Many
TCGA.AA.3869	16	6934453	90163274	24756	0.323	NEUTRAL	NA	618	Too-Many
TCGA.CM.4743	16	6934453	90163274	24770	-0.0444	NEUTRAL	NA	618	Too-Many
TCGA.AZ.6606	16	6939481	90163274	24697	0.0108	NEUTRAL	NA	618	Too-Many
TCGA.AA.3502	16	6948174	70842096	15162	-0.0261	NEUTRAL	NA	466	Too-Many
TCGA.CK.4951	16	6949725	7006427	46	0.042	NEUTRAL	NA	1	RBFOX1
TCGA.AZ.4615	16	6949725	78819226	18422	-0.0113	NEUTRAL	NA	518	Too-Many
TCGA.NH.A50V	16	6950274	90163274	24627	-0.0388	NEUTRAL	NA	618	Too-Many
TCGA.AA.3850	16	6954273	7149351	136	0.25435	NEUTRAL	NA	1	RBFOX1
TCGA.A6.4105	16	6957156	90163274	24772	-0.0771	NEUTRAL	NA	618	Too-Many
TCGA.AA.3695	16	6958847	70842096	15168	0.0201	NEUTRAL	NA	466	Too-Many
TCGA.D5.5539	16	6959488	7109008	87	-0.102	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3896	16	6965040	7133247	102	-0.3243	NEUTRAL	NA	1	RBFOX1
TCGA.AF.2693	16	6969294	90163274	24748	-0.0332	NEUTRAL	NA	618	Too-Many
TCGA.AH.6644	16	6969670	7505028	446	0.0405	NEUTRAL	NA	1	RBFOX1
TCGA.EI.6512	16	6973048	7146268	104	-0.4579	NEUTRAL	NA	1	RBFOX1
TCGA.F5.6464	16	6973048	70836369	15137	-0.0423	NEUTRAL	NA	465	Too-Many
TCGA.AG.A026	16	6974618	51753957	9432	-0.0269	NEUTRAL	NA	281	Too-Many
TCGA.A6.6781	16	6981821	78776032	16958	-0.0366	NEUTRAL	NA	518	Too-Many
TCGA.AG.3602	16	6981821	90163274	24601	0.0331	NEUTRAL	NA	618	Too-Many
TCGA.AF.5654	16	6989148	7087533	49	-0.014	NEUTRAL	NA	1	RBFOX1
TCGA.5M.AAT5	16	6989148	90163274	24729	0.0122	NEUTRAL	NA	618	Too-Many
TCGA.AG.3742	16	6999202	7093810	55	-0.0593	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3660	16	6999911	7146656	98	-0.2042	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6310	16	6999911	7209246	167	-0.0454	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3818	16	7005333	90163274	24738	-0.0111	NEUTRAL	NA	618	Too-Many
TCGA.CK.4951	16	7007858	7269416	219	-0.4552	NEUTRAL	NA	1	RBFOX1
TCGA.CK.6747	16	7009581	90163274	24635	-0.0191	NEUTRAL	NA	618	Too-Many
TCGA.DC.6682	16	7010775	90163274	24705	-0.3923	NEUTRAL	NA	618	Too-Many
TCGA.AA.3848	16	7012471	34441794	8005	0.0236	NEUTRAL	NA	253	Too-Many
TCGA.CM.6169	16	7015769	90163274	24558	-0.1141	NEUTRAL	NA	618	Too-Many
TCGA.AF.A56K	16	7030308	90163274	24655	0.0186	NEUTRAL	NA	618	Too-Many
TCGA.CM.5860	16	7034267	90163274	24678	0.2458	NEUTRAL	NA	618	Too-Many
TCGA.D5.6533	16	7034267	90163274	24633	0.141	NEUTRAL	NA	618	Too-Many
TCGA.AA.A01P	16	7036047	90163274	24674	-0.0178	NEUTRAL	NA	618	Too-Many
TCGA.CK.6746	16	7039420	7561458	457	-0.0408	NEUTRAL	NA	1	RBFOX1
TCGA.AD.A5EK	16	7039597	90163274	24569	-0.0702	NEUTRAL	NA	618	Too-Many
TCGA.AZ.6605	16	7045132	90163274	24628	0.2692	NEUTRAL	NA	618	Too-Many
TCGA.AA.3971	16	7052773	90163274	24691	0.3504	NEUTRAL	NA	618	Too-Many
TCGA.A6.2681	16	7063996	7093810	24	-0.143	NEUTRAL	NA	1	RBFOX1
TCGA.D5.6535	16	7063996	7465747	362	-0.0705	NEUTRAL	NA	1	RBFOX1
TCGA.4N.A93T	16	7063996	90163274	24710	-0.0396	NEUTRAL	NA	618	Too-Many
TCGA.AZ.4308	16	7063996	90163274	24687	-0.0171	NEUTRAL	NA	618	Too-Many
TCGA.EI.6513	16	7069055	8329115	990	-0.0188	NEUTRAL	NA	1	RBFOX1
TCGA.AZ.6598	16	7070642	70898911	15121	-0.025	NEUTRAL	NA	466	Too-Many
TCGA.AF.A56N	16	7074090	90163274	24649	0.0156	NEUTRAL	NA	618	Too-Many
TCGA.F5.6812	16	7074090	90163274	24654	0.1285	NEUTRAL	NA	618	Too-Many
TCGA.G4.6626	16	7087472	8312932	973	-0.3633	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3693	16	7087472	27594179	7387	0.0323	NEUTRAL	NA	137	Too-Many
TCGA.A6.2681	16	7095569	7200593	104	0.1937	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3956	16	7095569	7240743	140	0.2412	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6294	16	7095569	7361522	257	-0.025	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3728	16	7095569	70836369	15082	0.0382	NEUTRAL	NA	465	Too-Many
TCGA.AA.A02E.01A	16	7101985	84118547	4290	-0.0221	NEUTRAL	NA	541	Too-Many
TCGA.T9.A92H	16	7107355	9290748	1435	-0.3621	NEUTRAL	NA	9	"ABAT,C16orf72,CARHSP1,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.A6.2675	16	7107726	70814357	14972	0.2004	NEUTRAL	NA	465	Too-Many
TCGA.D5.5539	16	7112695	7576646	431	0.2152	NEUTRAL	NA	1	RBFOX1
TCGA.A6.5665	16	7113412	70883844	15061	-0.1984	NEUTRAL	NA	466	Too-Many
TCGA.AH.6643	16	7122873	88039149	24262	-0.0153	NEUTRAL	NA	575	Too-Many
TCGA.D5.6930	16	7131613	34441794	7917	-0.0069	NEUTRAL	NA	253	Too-Many
TCGA.AZ.4616	16	7132998	78538354	18023	0.1043	NEUTRAL	NA	518	Too-Many
TCGA.A6.2674	16	7132998	90163274	24646	-0.0251	NEUTRAL	NA	618	Too-Many
TCGA.A6.2683	16	7138504	88781039	24389	0.3177	NEUTRAL	NA	584	Too-Many
TCGA.AG.3896	16	7138504	90163274	24581	0.1502	NEUTRAL	NA	618	Too-Many
TCGA.EI.6514	16	7145566	70850892	15019	0.2232	NEUTRAL	NA	466	Too-Many
TCGA.EI.6512	16	7146309	7713922	538	-0.0473	NEUTRAL	NA	1	RBFOX1
TCGA.CM.4752	16	7146476	7213616	79	-0.0779	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A28F	16	7146656	25626275	6462	-0.033	NEUTRAL	NA	129	Too-Many
TCGA.QL.A97D	16	7148536	7158605	13	-0.1735	NEUTRAL	NA	1	RBFOX1
TCGA.AD.6965	16	7151570	13126470	3340	0.0472	NEUTRAL	NA	34	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,GRIN2A,GSPT1,LITAF,METTL22,NUBP1,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.CK.5916	16	7154180	90163274	24584	-0.024	NEUTRAL	NA	618	Too-Many
TCGA.CK.5913	16	7156381	78588570	18101	-0.0175	NEUTRAL	NA	518	Too-Many
TCGA.QL.A97D	16	7158725	8001777	729	0.3479	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	7160394	7165412	14	0.33375	NEUTRAL	NA	1	RBFOX1
TCGA.DC.6155	16	7161947	90163274	24513	-0.0734	NEUTRAL	NA	618	Too-Many
TCGA.AF.5654	16	7167885	90163274	24554	-0.0031	NEUTRAL	NA	618	Too-Many
TCGA.AA.3850	16	7170958	7185151	9	-0.27935	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3952	16	7175777	24547517	6131	-0.5097	NEUTRAL	NA	122	Too-Many
TCGA.EI.7002	16	7175777	62574465	12893	-0.015	NEUTRAL	NA	356	Too-Many
TCGA.SS.A7HO	16	7183989	79059168	18517	-0.0143	NEUTRAL	NA	518	Too-Many
TCGA.AA.3850	16	7186901	7242240	56	0.24625	NEUTRAL	NA	1	RBFOX1
TCGA.AF.3913	16	7197485	19049377	4720	-0.0499	NEUTRAL	NA	64	"ABAT,ABCC1,ABCC6,ARL6IP1,ATF7IP2,BFAR,C16orf45,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,FOPNL,GRIN2A,GSPT1,KIAA0430,LITAF,METTL22,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RPS15A,RRN3,RSL1D1,SHISA9,SMG1,SNN,SNX29,SOCS1,TEKT5,TMC7,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,XYLT1,ZC3H7A"
TCGA.A6.6653	16	7198197	7211690	15	-0.0406	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6320	16	7200593	7306907	114	-0.5054	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2681	16	7201421	7337939	140	-0.247	NEUTRAL	NA	1	RBFOX1
TCGA.DC.4745	16	7208394	90163274	24576	-0.0917	NEUTRAL	NA	618	Too-Many
TCGA.CM.4752	16	7214559	7402353	156	-0.4342	NEUTRAL	NA	1	RBFOX1
TCGA.AG.3742	16	7227734	90163274	24360	-0.0102	NEUTRAL	NA	618	Too-Many
TCGA.AG.3883	16	7230642	30772039	7643	0.0505	NEUTRAL	NA	215	Too-Many
TCGA.AA.3956	16	7240800	7397850	132	-0.4785	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3850	16	7243755	7288267	47	-0.03085	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3660	16	7255665	90163274	24519	-0.0189	NEUTRAL	NA	618	Too-Many
TCGA.AA.3666	16	7260431	63766073	13204	-0.1358	NEUTRAL	NA	356	Too-Many
TCGA.CK.4951	16	7272559	90163274	24389	-0.0029	NEUTRAL	NA	618	Too-Many
TCGA.AA.3850	16	7291267	7296883	11	-0.03655	NEUTRAL	NA	1	RBFOX1
TCGA.G4.6320	16	7307109	70854380	14865	0.1462	NEUTRAL	NA	466	Too-Many
TCGA.AA.3850	16	7313355	7735934	365	0.09645	NEUTRAL	NA	1	RBFOX1
TCGA.AA.A01Z	16	7325682	7786087	411	-0.0355	NEUTRAL	NA	1	RBFOX1
TCGA.EF.5830	16	7340428	90163274	24401	0	NEUTRAL	NA	618	Too-Many
TCGA.A6.6653	16	7342776	16001083	3937	-0.0179	NEUTRAL	NA	53	"ABAT,ATF7IP2,BFAR,C16orf45,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,FOPNL,GRIN2A,GSPT1,KIAA0430,LITAF,METTL22,MKL2,MPV17L,MYH11,NDE1,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RRN3,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.G4.6294	16	7381105	10787524	2071	-0.01	NEUTRAL	NA	13	"ABAT,ATF7IP2,C16orf72,CARHSP1,EMP2,GRIN2A,METTL22,PMM2,RBFOX1,TEKT5,TMEM114,TMEM186,USP7"
TCGA.AG.3611.01A	16	7382947	7743245	11	-0.0365	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3982	16	7389909	7736409	323	0.2633	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2681	16	7397795	7771745	362	-0.3144	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3956	16	7398028	51771623	9106	0.2393	NEUTRAL	NA	281	Too-Many
TCGA.CM.4752	16	7403078	7476724	72	-0.0964	NEUTRAL	NA	1	RBFOX1
TCGA.CM.5862	16	7441343	90163274	24353	-0.1272	NEUTRAL	NA	618	Too-Many
TCGA.CM.5348	16	7461976	7624830	167	-0.1737	NEUTRAL	NA	1	RBFOX1
TCGA.D5.6535	16	7467488	7666199	187	-0.489	NEUTRAL	NA	1	RBFOX1
TCGA.CM.4752	16	7492976	90163274	24284	0.0446	NEUTRAL	NA	618	Too-Many
TCGA.AZ.4682	16	7494364	90163274	24297	-0.0078	NEUTRAL	NA	618	Too-Many
TCGA.AA.3841	16	7497459	34470703	7592	0.1924	NEUTRAL	NA	253	Too-Many
TCGA.AA.3488	16	7560979	9891129	1422	-0.0098	NEUTRAL	NA	10	"ABAT,C16orf72,CARHSP1,GRIN2A,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.EI.6882	16	7561332	78371607	17500	0.005	NEUTRAL	NA	518	Too-Many
TCGA.D5.5539	16	7576967	7607111	34	-0.4368	NEUTRAL	NA	1	RBFOX1
TCGA.DM.A1D8	16	7587395	8902869	875	-0.0148	NEUTRAL	NA	6	"ABAT,METTL22,PMM2,RBFOX1,TMEM114,TMEM186"
TCGA.D5.5539	16	7609440	70846070	14589	0.2318	NEUTRAL	NA	466	Too-Many
TCGA.CM.5348	16	7625510	77762881	17069	0.1718	NEUTRAL	NA	515	Too-Many
TCGA.D5.6923	16	7632944	90163274	24119	-0.0153	NEUTRAL	NA	618	Too-Many
TCGA.D5.6535	16	7666390	31421416	7320	0.2524	NEUTRAL	NA	240	Too-Many
TCGA.AA.3664	16	7690522	78843515	17835	-0.0035	NEUTRAL	NA	518	Too-Many
TCGA.EI.6512	16	7717327	70869420	14512	0.2882	NEUTRAL	NA	466	Too-Many
TCGA.CK.6746	16	7730341	90163274	24040	-0.0057	NEUTRAL	NA	618	Too-Many
TCGA.AA.3850	16	7743746	7776123	43	0.00635	NEUTRAL	NA	1	RBFOX1
TCGA.AA.3982	16	7743746	7802156	61	0.2732	NEUTRAL	NA	1	RBFOX1
TCGA.A6.2681	16	7772248	78501802	17400	0.151	NEUTRAL	NA	517	Too-Many
TCGA.AA.3982	16	7817527	7896312	59	0.2424	NEUTRAL	NA	0	None
TCGA.AA.3850	16	7837452	7906259	46	-0.05065	NEUTRAL	NA	0	None
TCGA.AA.3947	16	7906044	90163274	23915	0.005	NEUTRAL	NA	617	Too-Many
TCGA.AA.3850	16	7910871	8280085	204	0.11845	NEUTRAL	NA	0	None
TCGA.AA.3982	16	7910871	8326842	238	0.2849	NEUTRAL	NA	0	None
TCGA.QL.A97D	16	8008305	8261638	141	-0.1395	NEUTRAL	NA	0	None
TCGA.G4.6307	16	8051012	8608536	379	-0.45	NEUTRAL	NA	1	TMEM114
TCGA.F4.6459	16	8070660	24572945	5403	-0.0314	NEUTRAL	NA	122	Too-Many
TCGA.AA.A01Z	16	8155493	10002808	1040	0.0285	NEUTRAL	NA	9	"ABAT,C16orf72,CARHSP1,GRIN2A,METTL22,PMM2,TMEM114,TMEM186,USP7"
TCGA.QL.A97D	16	8262542	8291345	10	0.1229	NEUTRAL	NA	0	None
TCGA.AA.A02Y	16	8293281	83501211	20816	0.0028	NEUTRAL	NA	534	Too-Many
TCGA.G4.6626	16	8313048	47084351	7112	0.2041	NEUTRAL	NA	259	Too-Many
TCGA.QL.A97D	16	8326544	29182369	6692	0.1431	NEUTRAL	NA	159	Too-Many
TCGA.EI.6513	16	8329677	34584076	6993	-0.0094	NEUTRAL	NA	252	Too-Many
TCGA.AA.3982	16	8330326	10797412	1363	0.3544	NEUTRAL	NA	12	"ABAT,ATF7IP2,C16orf72,CARHSP1,EMP2,GRIN2A,METTL22,PMM2,TEKT5,TMEM114,TMEM186,USP7"
TCGA.AA.3850	16	8330326	51695051	8375	0.23675	NEUTRAL	NA	280	Too-Many
TCGA.CM.5344	16	8336679	30914625	6798	0.2339	NEUTRAL	NA	218	Too-Many
TCGA.G4.6310	16	8418046	50641707	7874	0.2295	NEUTRAL	NA	276	Too-Many
TCGA.G4.6307	16	8609968	70842096	13895	0.2765	NEUTRAL	NA	465	Too-Many
TCGA.AG.A023.01A	16	8738383	57778274	2708	-0.1496	NEUTRAL	NA	335	Too-Many
TCGA.A6.3808.01A	16	8829544	14932255	313	0.0393	NEUTRAL	NA	39	"ABAT,ATF7IP2,BFAR,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,GRIN2A,GSPT1,LITAF,MKL2,NOMO1,NPIPA2,NPIPA3,NUBP1,PARN,PLA2G10,PMM2,PRM1,PRM2,PRM3,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AG.A016.01A	16	8839808	14334055	254	0.3519	NEUTRAL	NA	33	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,GRIN2A,GSPT1,LITAF,MKL2,NUBP1,PMM2,PRM1,PRM2,PRM3,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AA.A00N.01A	16	8906801	9185895	33	-0.1715	NEUTRAL	NA	4	"C16orf72,CARHSP1,PMM2,USP7"
TCGA.AA.A010.01A	16	9004546	10031788	26	-0.3403	NEUTRAL	NA	3	"C16orf72,GRIN2A,USP7"
TCGA.AA.A00L.01A	16	9017055	10524480	19	0.2413	NEUTRAL	NA	4	"ATF7IP2,C16orf72,GRIN2A,USP7"
TCGA.DM.A1D8	16	9032963	27075868	5843	-0.019	NEUTRAL	NA	123	Too-Many
TCGA.AF.2691	16	9085747	9183899	26	-0.4871	NEUTRAL	NA	0	None
TCGA.A6.3807	16	9102387	10689576	903	-0.0233	NEUTRAL	NA	4	"ATF7IP2,C16orf72,EMP2,GRIN2A"
TCGA.AF.2692	16	9162213	28169056	6183	0.0216	NEUTRAL	NA	131	Too-Many
TCGA.AF.2691	16	9198986	16049632	2787	-0.0008	NEUTRAL	NA	46	"ABCC1,ATF7IP2,BFAR,C16orf45,C16orf72,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,FOPNL,GRIN2A,GSPT1,KIAA0430,LITAF,MKL2,MPV17L,MYH11,NDE1,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PRM1,PRM2,PRM3,RMI2,RRN3,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TNFRSF17,TNP2,TVP23A,TXNDC11,ZC3H7A"
TCGA.DM.A1DB	16	9476344	71188798	13615	-0.0122	NEUTRAL	NA	457	Too-Many
TCGA.AA.3941	16	9548863	9604536	36	0.0865	NEUTRAL	NA	0	None
TCGA.AA.3872	16	9563976	9693675	102	0.3275	NEUTRAL	NA	0	None
TCGA.AA.3866	16	9707264	10288261	393	0.2214	NEUTRAL	NA	1	GRIN2A
TCGA.AG.A00C.01A	16	9857575	10840948	34	-0.2384	NEUTRAL	NA	5	"ATF7IP2,EMP2,GRIN2A,NUBP1,TEKT5"
TCGA.AA.3488	16	9894521	10045724	55	-0.3059	NEUTRAL	NA	1	GRIN2A
TCGA.F4.6460	16	9939476	90163274	22819	0.3037	NEUTRAL	NA	609	Too-Many
TCGA.AA.3488	16	10052439	90163274	22753	0.0098	NEUTRAL	NA	609	Too-Many
TCGA.AA.3941	16	10092001	10096869	8	-0.4999	NEUTRAL	NA	1	GRIN2A
TCGA.CK.5914.01A	16	10273808	11650329	97	0.3507	NEUTRAL	NA	16	"ATF7IP2,CIITA,CLEC16A,DEXI,EMP2,GRIN2A,LITAF,NUBP1,PRM1,PRM2,PRM3,RMI2,SOCS1,TEKT5,TNP2,TVP23A"
TCGA.EI.6883	16	10341140	10473816	43	0.0532	NEUTRAL	NA	0	None
TCGA.AZ.6608	16	10391697	10403427	6	-0.4788	NEUTRAL	NA	0	None
TCGA.EI.6883	16	10492467	11006542	214	0.3347	NEUTRAL	NA	6	"ATF7IP2,CIITA,EMP2,NUBP1,TEKT5,TVP23A"
TCGA.G4.6314	16	10559262	14759767	1820	0.016	NEUTRAL	NA	28	"ATF7IP2,BFAR,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,GSPT1,LITAF,MKL2,NUBP1,PARN,PRM1,PRM2,PRM3,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TNFRSF17,TNP2,TVP23A,TXNDC11,ZC3H7A"
TCGA.AA.3864	16	10582623	10588543	7	-0.5057	NEUTRAL	NA	0	None
TCGA.AA.3864	16	10591886	50800646	6714	0.1441	NEUTRAL	NA	269	Too-Many
TCGA.A6.3807	16	10689746	19093439	2560	0.2592	NEUTRAL	NA	53	"ABCC1,ABCC6,ARL6IP1,BFAR,C16orf45,CIITA,CLEC16A,COQ7,CPPED1,DEXI,ERCC4,FOPNL,GSPT1,KIAA0430,LITAF,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PRM1,PRM2,PRM3,RMI2,RPS15A,RRN3,RSL1D1,SHISA9,SMG1,SNN,SNX29,SOCS1,TEKT5,TMC7,TNFRSF17,TNP2,TVP23A,TXNDC11,XYLT1,ZC3H7A"
TCGA.G4.6294	16	10797412	70779143	12725	-0.0283	NEUTRAL	NA	452	Too-Many
TCGA.AA.3941	16	10798646	10819053	6	-0.1302	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	16	10840948	11051590	35	0.0368	NEUTRAL	NA	5	"CIITA,CLEC16A,DEXI,NUBP1,TVP23A"
TCGA.AG.A00C.01A	16	10846425	11001076	25	0.3571	NEUTRAL	NA	3	"CIITA,NUBP1,TVP23A"
TCGA.AA.A00N.01A	16	10912250	11650329	59	0.1881	NEUTRAL	NA	11	"CIITA,CLEC16A,DEXI,LITAF,PRM1,PRM2,PRM3,RMI2,SOCS1,TNP2,TVP23A"
TCGA.AA.A00Q.01A	16	10995292	11001076	7	-0.2645	NEUTRAL	NA	1	CIITA
TCGA.AA.A00Q.01A	16	11002834	11214423	11	0.3476	NEUTRAL	NA	3	"CIITA,CLEC16A,DEXI"
TCGA.AG.A00C.01A	16	11002834	11791930	48	-0.0246	NEUTRAL	NA	12	"CIITA,CLEC16A,DEXI,LITAF,PRM1,PRM2,PRM3,RMI2,SNN,SOCS1,TNP2,TXNDC11"
TCGA.EI.6883	16	11008261	11734316	321	-0.097	NEUTRAL	NA	10	"CIITA,CLEC16A,DEXI,LITAF,PRM1,PRM2,PRM3,RMI2,SOCS1,TNP2"
TCGA.DM.A1HB	16	11015905	70855632	12377	0.0075	NEUTRAL	NA	451	Too-Many
TCGA.AZ.6608	16	11037737	11149171	45	0.0335	NEUTRAL	NA	1	CLEC16A
TCGA.AA.A010.01A	16	11051590	11073161	8	-0.1486	NEUTRAL	NA	1	CLEC16A
TCGA.AA.3967.01A	16	11219787	18809985	399	0.2782	NEUTRAL	NA	45	"ABCC1,ABCC6,ARL6IP1,BFAR,C16orf45,CLEC16A,CPPED1,ERCC4,FOPNL,GSPT1,KIAA0430,LITAF,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,PARN,PDXDC1,PLA2G10,PRM1,PRM2,PRM3,RMI2,RPS15A,RRN3,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TNFRSF17,TNP2,TXNDC11,XYLT1,ZC3H7A"
TCGA.EI.6883	16	11734641	12435027	231	0.3022	NEUTRAL	NA	7	"GSPT1,RSL1D1,SNN,SNX29,TNFRSF17,TXNDC11,ZC3H7A"
TCGA.CK.5914.01A	16	11769915	11852240	16	-0.2539	NEUTRAL	NA	3	"SNN,TXNDC11,ZC3H7A"
TCGA.AG.4009.01A	16	11781676	11827796	8	-0.0608	NEUTRAL	NA	1	TXNDC11
TCGA.AG.A00C.01A	16	11794266	11944089	32	0.3561	NEUTRAL	NA	3	"RSL1D1,TXNDC11,ZC3H7A"
TCGA.AG.3909.01A	16	11815383	11856475	11	0.0886	NEUTRAL	NA	2	"TXNDC11,ZC3H7A"
TCGA.AG.4009.01A	16	11829825	11876090	22	-0.4464	NEUTRAL	NA	2	"TXNDC11,ZC3H7A"
TCGA.CK.5914.01A	16	11855221	11933535	19	0.201	NEUTRAL	NA	2	"RSL1D1,ZC3H7A"
TCGA.AG.4009.01A	16	11931604	14766416	100	-0.0056	NEUTRAL	NA	11	"BFAR,CPPED1,ERCC4,GSPT1,MKL2,PARN,PLA2G10,RSL1D1,SHISA9,SNX29,TNFRSF17"
TCGA.AA.A010.01A	16	11931604	14965408	126	0.2616	NEUTRAL	NA	14	"BFAR,CPPED1,ERCC4,GSPT1,MKL2,NOMO1,NPIPA2,NPIPA3,PARN,PLA2G10,RSL1D1,SHISA9,SNX29,TNFRSF17"
TCGA.AA.A00N.01A	16	11945215	11980306	7	0.1099	NEUTRAL	NA	2	"GSPT1,RSL1D1"
TCGA.AG.A00C.01A	16	11945215	11984857	9	-0.0615	NEUTRAL	NA	2	"GSPT1,RSL1D1"
TCGA.A6.6780	16	12083344	71600536	12434	0.0027	NEUTRAL	NA	440	Too-Many
TCGA.AA.A01Z	16	12094148	90163274	21824	-0.0015	NEUTRAL	NA	587	Too-Many
TCGA.AA.A00A.01A	16	12121137	14013995	9	-0.0095	NEUTRAL	NA	3	"CPPED1,SHISA9,SNX29"
TCGA.AG.A00C.01A	16	12121137	15802606	192	0.1235	NEUTRAL	NA	21	"BFAR,C16orf45,CPPED1,ERCC4,KIAA0430,MKL2,MPV17L,MYH11,NDE1,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,PARN,PDXDC1,PLA2G10,RRN3,SHISA9,SNX29"
TCGA.EI.6883	16	12435781	52301821	6629	-0.0395	NEUTRAL	NA	251	Too-Many
TCGA.AG.3725	16	12648057	12654503	8	-0.2623	NEUTRAL	NA	1	SNX29
TCGA.AG.3891.01A	16	12662312	14354738	32	-0.102	NEUTRAL	NA	5	"CPPED1,ERCC4,MKL2,SHISA9,SNX29"
TCGA.5M.AAT4	16	12671031	90123731	21510	-0.1752	NEUTRAL	NA	586	Too-Many
TCGA.G4.6322	16	12873899	65674726	10740	-0.0187	NEUTRAL	NA	325	Too-Many
TCGA.AA.3982	16	12893818	13742099	396	0.2823	NEUTRAL	NA	2	"CPPED1,SHISA9"
TCGA.T9.A92H	16	12932527	13525137	261	-0.3959	NEUTRAL	NA	1	SHISA9
TCGA.AA.3866	16	13002358	34471297	4616	0.3665	NEUTRAL	NA	220	Too-Many
TCGA.AD.6965	16	13130273	70859683	11669	0.0394	NEUTRAL	NA	433	Too-Many
TCGA.AA.3858	16	13591196	70883844	11475	0.02	NEUTRAL	NA	432	Too-Many
TCGA.AA.3982	16	13747575	13791464	37	-0.0717	NEUTRAL	NA	0	None
TCGA.AY.6197	16	13764740	77591852	13362	-0.0201	NEUTRAL	NA	480	Too-Many
TCGA.AA.3982	16	13795866	14053830	166	0.2519	NEUTRAL	NA	1	ERCC4
TCGA.AG.A01W.01A	16	13939084	14555365	26	0.2391	NEUTRAL	NA	3	"ERCC4,MKL2,PARN"
TCGA.AA.A00N.01A	16	14015840	14031569	9	-0.4487	NEUTRAL	NA	1	ERCC4
TCGA.F5.6811.01A	16	14141917	14673917	48	-0.0159	NEUTRAL	NA	2	"MKL2,PARN"
TCGA.AA.3982	16	14206748	14361316	38	0.3382	NEUTRAL	NA	1	MKL2
TCGA.AG.A02G.01A	16	14234416	90142216	4524	-0.0839	NEUTRAL	NA	583	Too-Many
TCGA.AA.3509.01A	16	14312630	19873107	475	-0.2289	NEUTRAL	NA	40	"ABCC1,ABCC6,ARL6IP1,BFAR,C16orf45,C16orf62,CCP110,CLEC19A,COQ7,FOPNL,GDE1,GPRC5B,IQCK,ITPRIPL2,KIAA0430,KNOP1,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,PARN,PDXDC1,PLA2G10,RPS15A,RRN3,SMG1,SYT17,TMC5,TMC7,XYLT1"
TCGA.AA.A00N.01A	16	14351887	15068967	63	-0.1243	NEUTRAL	NA	9	"BFAR,MKL2,NOMO1,NPIPA1,NPIPA2,NPIPA3,PARN,PDXDC1,PLA2G10"
TCGA.AG.3891.01A	16	14397764	22314206	760	0.223	NEUTRAL	NA	68	"ABCC1,ABCC6,ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,BFAR,C16orf45,C16orf52,C16orf62,CCP110,CLEC19A,COQ7,CRYM,DCUN1D3,DNAH3,EEF2K,ERI2,FOPNL,GDE1,GP2,GPR139,GPRC5B,IGSF6,IQCK,ITPRIPL2,KIAA0430,KNOP1,LOC81691,LYRM1,METTL9,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NPIPB3,NTAN1,OTOA,PARN,PDILT,PDXDC1,PDZD9,PLA2G10,POLR3E,RPS15A,RRN3,SMG1,SYT17,THUMPD1,TMC5,TMC7,TMEM159,UMOD,UQCRC2,VWA3A,XYLT1,ZP2"
TCGA.AG.A01W.01A	16	14556944	15666080	141	-0.1826	NEUTRAL	NA	13	"BFAR,C16orf45,MPV17L,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,PARN,PDXDC1,PLA2G10,RRN3"
TCGA.AG.A016.01A	16	14755717	15091590	31	0.1132	NEUTRAL	NA	7	"BFAR,NOMO1,NPIPA1,NPIPA2,NPIPA3,PDXDC1,PLA2G10"
TCGA.CM.6172	16	14759767	90163274	20656	0.2768	NEUTRAL	NA	581	Too-Many
TCGA.F5.6811.01A	16	14839756	14890404	25	-0.3459	NEUTRAL	NA	2	"NPIPA2,NPIPA3"
TCGA.F5.6811.01A	16	14896302	15397255	49	-0.029	NEUTRAL	NA	5	"NOMO1,NPIPA1,NTAN1,PDXDC1,RRN3"
TCGA.AG.4009.01A	16	14951057	14982903	19	-0.1313	NEUTRAL	NA	1	NOMO1
TCGA.DM.A28M.01A	16	14960363	16330741	207	-0.2134	NEUTRAL	NA	15	"ABCC1,ABCC6,C16orf45,FOPNL,KIAA0430,MPV17L,MYH11,NDE1,NOMO1,NOMO3,NPIPA1,NPIPA5,NTAN1,PDXDC1,RRN3"
TCGA.AG.4009.01A	16	14988801	15173823	39	-0.459	NEUTRAL	NA	5	"NOMO1,NPIPA1,NTAN1,PDXDC1,RRN3"
TCGA.CK.5914.01A	16	15091590	15501667	48	-0.0495	NEUTRAL	NA	5	"MPV17L,NPIPA5,NTAN1,PDXDC1,RRN3"
TCGA.AG.3909.01A	16	15092178	15129259	17	0.1579	NEUTRAL	NA	1	PDXDC1
TCGA.AA.3861.01A	16	15102589	15141299	22	-0.2347	NEUTRAL	NA	2	"NTAN1,PDXDC1"
TCGA.AA.3862.01A	16	15102589	15141299	22	-0.0416	NEUTRAL	NA	2	"NTAN1,PDXDC1"
TCGA.AA.3930.01A	16	15122680	15187950	32	-0.2217	NEUTRAL	NA	3	"NTAN1,PDXDC1,RRN3"
TCGA.AA.A010.01A	16	15125555	15135420	11	-0.5024	NEUTRAL	NA	2	"NTAN1,PDXDC1"
TCGA.AA.A00N.01A	16	15127113	15129823	4	0.3768	NEUTRAL	NA	1	PDXDC1
TCGA.AG.3909.01A	16	15129823	15156995	11	-0.2883	NEUTRAL	NA	3	"NTAN1,PDXDC1,RRN3"
TCGA.AG.3909.01A	16	15159029	15179449	11	0.2918	NEUTRAL	NA	2	"PDXDC1,RRN3"
TCGA.AG.A016.01A	16	15166779	15680522	19	0.1863	NEUTRAL	NA	5	"C16orf45,MPV17L,NPIPA5,PDXDC1,RRN3"
TCGA.AA.A010.01A	16	15173823	15186319	7	-0.1234	NEUTRAL	NA	2	"PDXDC1,RRN3"
TCGA.AG.4009.01A	16	15177343	15661778	12	-0.1064	NEUTRAL	NA	5	"C16orf45,MPV17L,NPIPA5,PDXDC1,RRN3"
TCGA.AA.A00N.01A	16	15177343	15711159	30	0.0623	NEUTRAL	NA	6	"C16orf45,KIAA0430,MPV17L,NPIPA5,PDXDC1,RRN3"
TCGA.A6.3808.01A	16	15187950	15802606	46	-0.2415	NEUTRAL	NA	8	"C16orf45,KIAA0430,MPV17L,MYH11,NDE1,NPIPA5,PDXDC1,RRN3"
TCGA.F5.6811.01A	16	15402114	30116044	1357	-0.3558	NEUTRAL	NA	144	Too-Many
TCGA.AA.3861.01A	16	15489754	15787968	42	0.3643	NEUTRAL	NA	4	"C16orf45,KIAA0430,MPV17L,NDE1"
TCGA.G4.6314	16	15491126	30507338	3711	0.0121	NEUTRAL	NA	155	Too-Many
TCGA.AF.6672	16	15675636	19300348	846	-0.4196	NEUTRAL	NA	20	"ABCC1,ABCC6,ARL6IP1,C16orf45,CLEC19A,COQ7,FOPNL,ITPRIPL2,KIAA0430,MYH11,NDE1,NOMO2,NOMO3,NPIPA7,NPIPA8,RPS15A,SMG1,SYT17,TMC7,XYLT1"
TCGA.AG.4009.01A	16	15694253	15719247	16	0.0131	NEUTRAL	NA	1	KIAA0430
TCGA.AG.A01W.01A	16	15720894	15728166	7	-0.0424	NEUTRAL	NA	1	KIAA0430
TCGA.AG.3909.01A	16	15724147	15732896	7	-0.2903	NEUTRAL	NA	1	KIAA0430
TCGA.AG.4009.01A	16	15732896	15771609	4	-0.1448	NEUTRAL	NA	2	"KIAA0430,NDE1"
TCGA.AG.A01W.01A	16	15765105	16151890	47	-0.2711	NEUTRAL	NA	4	"ABCC1,FOPNL,MYH11,NDE1"
TCGA.AG.4009.01A	16	15781205	16305976	99	0.2271	NEUTRAL	NA	5	"ABCC1,ABCC6,FOPNL,MYH11,NDE1"
TCGA.AA.3862.01A	16	15787968	16286637	94	-0.3657	NEUTRAL	NA	5	"ABCC1,ABCC6,FOPNL,MYH11,NDE1"
TCGA.AA.A00Q.01A	16	15808716	15813967	6	-0.2018	NEUTRAL	NA	2	"MYH11,NDE1"
TCGA.AA.A00K.01A	16	15808716	15818011	9	-0.4934	NEUTRAL	NA	2	"MYH11,NDE1"
TCGA.AA.A00A.01A	16	15808716	15853401	25	0.0406	NEUTRAL	NA	2	"MYH11,NDE1"
TCGA.AG.A00C.01A	16	15808716	15878464	32	-0.2185	NEUTRAL	NA	2	"MYH11,NDE1"
TCGA.AA.A00D.01A	16	15808716	15931713	36	-0.0469	NEUTRAL	NA	2	"MYH11,NDE1"
TCGA.AA.A01I.01A	16	15818011	18806749	132	-0.3773	NEUTRAL	NA	12	"ABCC1,ABCC6,ARL6IP1,FOPNL,MYH11,NDE1,NOMO2,NOMO3,NPIPA7,NPIPA8,RPS15A,XYLT1"
TCGA.AA.A00K.01A	16	15818484	15838959	9	-0.0498	NEUTRAL	NA	2	"MYH11,NDE1"
TCGA.AG.A016.01A	16	15831277	15854360	13	0.0643	NEUTRAL	NA	1	MYH11
TCGA.AA.A00K.01A	16	15841385	19062986	123	0.3456	NEUTRAL	NA	13	"ABCC1,ABCC6,ARL6IP1,FOPNL,MYH11,NOMO2,NOMO3,NPIPA7,NPIPA8,RPS15A,SMG1,TMC7,XYLT1"
TCGA.AG.A00C.01A	16	15880436	15977855	8	0.3136	NEUTRAL	NA	2	"FOPNL,MYH11"
TCGA.AG.3909.01A	16	15961239	15977855	4	-0.4502	NEUTRAL	NA	1	FOPNL
TCGA.AA.A00A.01A	16	15982342	16276614	17	-0.0916	NEUTRAL	NA	3	"ABCC1,ABCC6,FOPNL"
TCGA.AG.A00C.01A	16	15982342	16297260	53	-0.227	NEUTRAL	NA	3	"ABCC1,ABCC6,FOPNL"
TCGA.AA.A00D.01A	16	15982342	18568977	67	0.1131	NEUTRAL	NA	8	"ABCC1,ABCC6,FOPNL,NOMO2,NOMO3,NPIPA7,NPIPA8,XYLT1"
TCGA.A6.6653	16	16005567	16083371	22	-0.5042	NEUTRAL	NA	1	ABCC1
TCGA.A6.6653	16	16098161	16140040	20	-0.4611	NEUTRAL	NA	1	ABCC1
TCGA.CM.6163	16	16105481	90163274	20398	0	NEUTRAL	NA	565	Too-Many
TCGA.AA.3861.01A	16	16130287	16286637	43	-0.0504	NEUTRAL	NA	2	"ABCC1,ABCC6"
TCGA.A6.6653	16	16140509	20018550	922	-0.023	NEUTRAL	NA	22	"ABCC1,ABCC6,ARL6IP1,C16orf62,CCP110,CLEC19A,COQ7,GDE1,GPRC5B,IQCK,ITPRIPL2,KNOP1,NOMO2,NOMO3,NPIPA7,NPIPA8,RPS15A,SMG1,SYT17,TMC5,TMC7,XYLT1"
TCGA.AF.2691	16	16141822	90163274	20446	0.012	NEUTRAL	NA	565	Too-Many
TCGA.AA.A00N.01A	16	16196442	16208652	4	-0.3819	NEUTRAL	NA	1	ABCC1
TCGA.AG.A015.01A	16	16243969	16346247	29	-0.1184	NEUTRAL	NA	2	"ABCC6,NOMO3"
TCGA.AG.A016.01A	16	16251468	18812669	71	-0.0375	NEUTRAL	NA	8	"ABCC6,ARL6IP1,NOMO2,NOMO3,NPIPA7,NPIPA8,RPS15A,XYLT1"
TCGA.AG.A01W.01A	16	16257038	18717487	41	-0.2815	NEUTRAL	NA	6	"ABCC6,NOMO2,NOMO3,NPIPA7,NPIPA8,XYLT1"
TCGA.AA.A00A.01A	16	16278752	17352856	20	0.3018	NEUTRAL	NA	5	"ABCC6,NOMO3,NPIPA7,NPIPA8,XYLT1"
TCGA.AA.A010.01A	16	16302555	16367649	18	-0.2861	NEUTRAL	NA	2	"ABCC6,NOMO3"
TCGA.AG.A00C.01A	16	16302555	16367649	18	0.1735	NEUTRAL	NA	2	"ABCC6,NOMO3"
TCGA.AA.A00N.01A	16	16305976	16367649	18	-0.0435	NEUTRAL	NA	2	"ABCC6,NOMO3"
TCGA.CK.5914.01A	16	16313382	16346247	8	-0.1993	NEUTRAL	NA	2	"ABCC6,NOMO3"
TCGA.AG.3909.01A	16	16315377	16336971	3	-0.1175	NEUTRAL	NA	2	"ABCC6,NOMO3"
TCGA.AG.4009.01A	16	16338887	18887407	79	-0.0275	NEUTRAL	NA	8	"ARL6IP1,NOMO2,NOMO3,NPIPA7,NPIPA8,RPS15A,SMG1,XYLT1"
TCGA.AG.A015.01A	16	16349528	57741320	2249	0.3258	NEUTRAL	NA	281	Too-Many
TCGA.AA.3982	16	16633360	17122767	86	0.3049	NEUTRAL	NA	0	None
TCGA.AG.3726	16	16633360	22409144	1311	0.3074	NEUTRAL	NA	49	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,C16orf52,C16orf62,CCP110,CDR2,CLEC19A,COQ7,CRYM,DCUN1D3,DNAH3,EEF2K,ERI2,GDE1,GP2,GPR139,GPRC5B,IGSF6,IQCK,ITPRIPL2,KNOP1,LOC81691,LYRM1,METTL9,NOMO2,NPIPA7,NPIPA8,NPIPB3,OTOA,PDILT,PDZD9,POLR3E,RPS15A,SMG1,SYT17,THUMPD1,TMC5,TMC7,TMEM159,UMOD,UQCRC2,VWA3A,XYLT1,ZP2"
TCGA.T9.A92H	16	16633571	18266539	501	0.2303	NEUTRAL	NA	1	XYLT1
TCGA.AA.3941	16	17123846	17131749	8	-0.4732	NEUTRAL	NA	0	None
TCGA.AG.A00C.01A	16	17202565	17451787	11	-0.3446	NEUTRAL	NA	1	XYLT1
TCGA.AA.A01Q.01A	16	17451787	20395960	186	0.0428	NEUTRAL	NA	23	"ARL6IP1,C16orf62,CCP110,CLEC19A,COQ7,GDE1,GP2,GPR139,GPRC5B,IQCK,ITPRIPL2,KNOP1,NOMO2,NPIPA7,NPIPA8,PDILT,RPS15A,SMG1,SYT17,TMC5,TMC7,UMOD,XYLT1"
TCGA.AG.A00C.01A	16	18531903	19067817	77	0.0586	NEUTRAL	NA	5	"ARL6IP1,NOMO2,RPS15A,SMG1,TMC7"
TCGA.AA.A00N.01A	16	18535766	18560795	9	0.2089	NEUTRAL	NA	1	NOMO2
TCGA.AG.3909.01A	16	18568977	18809985	10	-0.4987	NEUTRAL	NA	3	"ARL6IP1,NOMO2,RPS15A"
TCGA.AG.A01W.01A	16	18756868	18764256	5	-0.148	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	18776971	19637101	127	-0.2524	NEUTRAL	NA	12	"ARL6IP1,C16orf62,CCP110,CLEC19A,COQ7,GDE1,ITPRIPL2,RPS15A,SMG1,SYT17,TMC5,TMC7"
TCGA.DM.A28M.01A	16	18796004	61689327	2611	-0.1575	NEUTRAL	NA	296	Too-Many
TCGA.AA.3518	16	18808402	22421320	802	0.0249	NEUTRAL	NA	44	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,C16orf52,C16orf62,CCP110,CDR2,CLEC19A,COQ7,CRYM,DCUN1D3,DNAH3,EEF2K,ERI2,GDE1,GP2,GPR139,GPRC5B,IGSF6,IQCK,ITPRIPL2,KNOP1,LOC81691,LYRM1,METTL9,NPIPB3,OTOA,PDILT,PDZD9,POLR3E,SMG1,SYT17,THUMPD1,TMC5,TMC7,TMEM159,UMOD,UQCRC2,VWA3A,ZP2"
TCGA.AA.A00N.01A	16	18812669	18828564	7	-0.1588	NEUTRAL	NA	2	"ARL6IP1,SMG1"
TCGA.AA.A00A.01A	16	18812669	18861231	8	-0.1199	NEUTRAL	NA	2	"ARL6IP1,SMG1"
TCGA.AA.3967.01A	16	18812669	18864885	28	-0.3446	NEUTRAL	NA	2	"ARL6IP1,SMG1"
TCGA.AA.A00D.01A	16	18812669	18864885	13	-0.1118	NEUTRAL	NA	2	"ARL6IP1,SMG1"
TCGA.AA.A01I.01A	16	18812669	56435603	1891	-0.1909	NEUTRAL	NA	239	Too-Many
TCGA.AG.A016.01A	16	18820833	67304594	2613	0.367	NEUTRAL	NA	330	Too-Many
TCGA.AA.3967.01A	16	18865940	29814048	979	0.1755	NEUTRAL	NA	109	Too-Many
TCGA.AG.4009.01A	16	18893450	19020457	6	-0.4734	NEUTRAL	NA	2	"SMG1,TMC7"
TCGA.AA.A00N.01A	16	18895392	19067817	19	0.1119	NEUTRAL	NA	2	"SMG1,TMC7"
TCGA.A6.3808.01A	16	18937221	19027735	3	-0.3811	NEUTRAL	NA	2	"SMG1,TMC7"
TCGA.AG.4009.01A	16	19027735	19089353	20	0.0642	NEUTRAL	NA	2	"COQ7,TMC7"
TCGA.AA.3861.01A	16	19027735	31896433	1441	-0.0095	NEUTRAL	NA	186	Too-Many
TCGA.AA.3862.01A	16	19027735	53635958	1869	0.1179	NEUTRAL	NA	225	Too-Many
TCGA.A6.3808.01A	16	19032919	29810265	995	0.2138	NEUTRAL	NA	108	Too-Many
TCGA.5M.AATA	16	19082100	22377002	756	0.0026	NEUTRAL	NA	41	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,C16orf52,C16orf62,CCP110,CDR2,CLEC19A,COQ7,CRYM,DCUN1D3,DNAH3,EEF2K,ERI2,GDE1,GP2,GPR139,GPRC5B,IGSF6,IQCK,ITPRIPL2,KNOP1,LOC81691,LYRM1,METTL9,NPIPB3,OTOA,PDILT,PDZD9,POLR3E,SYT17,THUMPD1,TMC5,TMEM159,UMOD,UQCRC2,VWA3A,ZP2"
TCGA.A6.3807	16	19095451	24017171	1139	-0.3802	NEUTRAL	NA	56	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,C16orf52,C16orf62,CCP110,CDR2,CHP2,CLEC19A,COG7,CRYM,DCTN5,DCUN1D3,DNAH3,EARS2,EEF2K,ERI2,ERN2,GDE1,GGA2,GP2,GPR139,GPRC5B,HS3ST2,IGSF6,IQCK,ITPRIPL2,KNOP1,LOC81691,LYRM1,METTL9,NDUFAB1,NPIPB3,NPIPB5,OTOA,PALB2,PDILT,PDZD9,PLK1,POLR3E,PRKCB,SCNN1B,SCNN1G,SYT17,THUMPD1,TMC5,TMEM159,UBFD1,UMOD,UQCRC2,USP31,VWA3A,ZP2"
TCGA.AG.3909.01A	16	19125746	19235958	9	0.3604	NEUTRAL	NA	2	"ITPRIPL2,SYT17"
TCGA.AA.A00D.01A	16	19125746	19509168	27	0.3149	NEUTRAL	NA	4	"CLEC19A,ITPRIPL2,SYT17,TMC5"
TCGA.CK.5914.01A	16	19179880	19235958	7	0.1269	NEUTRAL	NA	1	SYT17
TCGA.AA.A010.01A	16	19179880	21969792	363	0.2832	NEUTRAL	NA	33	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,C16orf62,CCP110,CLEC19A,CRYM,DCUN1D3,DNAH3,ERI2,GDE1,GP2,GPR139,GPRC5B,IGSF6,IQCK,KNOP1,LOC81691,LYRM1,METTL9,NPIPB3,OTOA,PDILT,SYT17,THUMPD1,TMC5,TMEM159,UMOD,UQCRC2,ZP2"
TCGA.AA.A00N.01A	16	19184705	19235958	5	0.1814	NEUTRAL	NA	1	SYT17
TCGA.AG.4009.01A	16	19191666	20337607	105	0.0444	NEUTRAL	NA	11	"C16orf62,CCP110,CLEC19A,GDE1,GP2,GPR139,GPRC5B,IQCK,KNOP1,SYT17,TMC5"
TCGA.AG.A00C.01A	16	19191666	20395960	122	-0.0063	NEUTRAL	NA	13	"C16orf62,CCP110,CLEC19A,GDE1,GP2,GPR139,GPRC5B,IQCK,KNOP1,PDILT,SYT17,TMC5,UMOD"
TCGA.AA.3941	16	19211273	19246523	11	0.1402	NEUTRAL	NA	1	SYT17
TCGA.AF.6672	16	19300698	34197817	2986	-0.0149	NEUTRAL	NA	186	Too-Many
TCGA.CK.4948.01B	16	19460817	19883086	86	0.1112	NEUTRAL	NA	7	"C16orf62,CCP110,GDE1,GPRC5B,IQCK,KNOP1,TMC5"
TCGA.AA.A00N.01A	16	19503415	19562468	25	-0.4139	NEUTRAL	NA	3	"CCP110,GDE1,TMC5"
TCGA.AG.3909.01A	16	19518965	19562468	18	-0.0192	NEUTRAL	NA	2	"CCP110,GDE1"
TCGA.CK.5914.01A	16	19539167	19562468	15	-0.3087	NEUTRAL	NA	1	CCP110
TCGA.AA.A00K.01A	16	19553896	56855364	1704	0.3133	NEUTRAL	NA	245	Too-Many
TCGA.CK.5914.01A	16	19566959	19883490	47	0.3521	NEUTRAL	NA	4	"C16orf62,GPRC5B,IQCK,KNOP1"
TCGA.AG.3909.01A	16	19711661	19725428	5	0.0627	NEUTRAL	NA	2	"C16orf62,KNOP1"
TCGA.AA.A00N.01A	16	19711661	19883490	17	-0.4194	NEUTRAL	NA	4	"C16orf62,GPRC5B,IQCK,KNOP1"
TCGA.AG.A01W.01A	16	19790633	20609770	81	-0.0745	NEUTRAL	NA	9	"ACSM2A,ACSM2B,ACSM5,GP2,GPR139,GPRC5B,IQCK,PDILT,UMOD"
TCGA.AA.3509.01A	16	19883086	20807644	100	0.0895	NEUTRAL	NA	12	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ERI2,GP2,GPR139,GPRC5B,PDILT,THUMPD1,UMOD"
TCGA.AA.A02K.01A	16	20043100	20335111	12	-0.0356	NEUTRAL	NA	2	"GP2,GPR139"
TCGA.A6.6653	16	20077868	29234042	2491	-0.0191	NEUTRAL	NA	85	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,APOBR,AQP8,ARHGAP17,ATP2A1,ATXN2L,C16orf52,C16orf82,CACNG3,CCDC101,CD19,CDR2,CHP2,CLN3,COG7,CRYM,DCTN5,DCUN1D3,DNAH3,EARS2,EEF2K,EIF3C,EIF3CL,ERI2,ERN2,GGA2,GP2,GPR139,GSG1L,GTF3C1,HS3ST2,HS3ST4,IGSF6,IL21R,IL27,IL4R,KDM8,KIAA0556,LAT,LCMT1,LOC81691,LYRM1,METTL9,NDUFAB1,NFATC2IP,NPIPB3,NPIPB5,NPIPB6,NPIPB9,NSMCE1,NUPR1,OTOA,PALB2,PDILT,PDZD9,PLK1,POLR3E,PRKCB,RABEP2,RBBP6,SBK1,SCNN1B,SCNN1G,SH2B1,SLC5A11,SPNS1,SULT1A1,SULT1A2,THUMPD1,TMEM159,TNRC6A,TUFM,UBFD1,UMOD,UQCRC2,USP31,VWA3A,XPO6,ZKSCAN2,ZP2"
TCGA.A6.2677	16	20083692	70850892	9175	0.2831	NEUTRAL	NA	391	Too-Many
TCGA.AA.A02K.01A	16	20337636	30620799	1051	0.3164	NEUTRAL	NA	132	Too-Many
TCGA.AG.4009.01A	16	20344570	20355294	6	0.3548	NEUTRAL	NA	1	UMOD
TCGA.AA.A017.01A	16	20344570	21208754	181	0.1615	NEUTRAL	NA	14	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,DCUN1D3,DNAH3,ERI2,LOC81691,LYRM1,PDILT,THUMPD1,TMEM159,UMOD"
TCGA.CK.4948.01B	16	20344570	90142216	4719	0.1308	NEUTRAL	NA	541	Too-Many
TCGA.AG.3909.01A	16	20347932	20376695	11	0.3685	NEUTRAL	NA	2	"PDILT,UMOD"
TCGA.AA.A00N.01A	16	20348596	20395960	16	-0.4544	NEUTRAL	NA	2	"PDILT,UMOD"
TCGA.AG.4009.01A	16	20357410	20976119	121	0.0011	NEUTRAL	NA	13	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,DCUN1D3,DNAH3,ERI2,LOC81691,LYRM1,PDILT,THUMPD1,UMOD"
TCGA.AA.A00D.01A	16	20387343	20792973	60	0.1586	NEUTRAL	NA	8	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ERI2,PDILT,THUMPD1"
TCGA.AG.A00C.01A	16	20410373	20476797	15	-0.3065	NEUTRAL	NA	3	"ACSM2A,ACSM5,PDILT"
TCGA.AA.A01Q.01A	16	20435186	20986508	106	0.2644	NEUTRAL	NA	11	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,DCUN1D3,DNAH3,ERI2,LOC81691,LYRM1,THUMPD1"
TCGA.AA.A00N.01A	16	20480786	20563415	18	-0.4467	NEUTRAL	NA	2	"ACSM2A,ACSM2B"
TCGA.AG.A00C.01A	16	20480786	20575964	22	0.0781	NEUTRAL	NA	2	"ACSM2A,ACSM2B"
TCGA.AG.3909.01A	16	20486943	20557658	11	0.1978	NEUTRAL	NA	2	"ACSM2A,ACSM2B"
TCGA.AG.A00C.01A	16	20634752	20696463	12	-0.4575	NEUTRAL	NA	1	ACSM1
TCGA.AG.A01W.01A	16	20655694	20780935	45	0.1974	NEUTRAL	NA	3	"ACSM1,ACSM3,THUMPD1"
TCGA.CK.5914.01A	16	20702268	20835714	32	-0.0127	NEUTRAL	NA	5	"ACSM1,ACSM3,ERI2,LOC81691,THUMPD1"
TCGA.AG.A00C.01A	16	20702268	20986508	61	-0.0723	NEUTRAL	NA	8	"ACSM1,ACSM3,DCUN1D3,DNAH3,ERI2,LOC81691,LYRM1,THUMPD1"
TCGA.AG.3909.01A	16	20748151	20750168	3	-0.4061	NEUTRAL	NA	1	THUMPD1
TCGA.AA.A00N.01A	16	20797352	20803292	5	0.022	NEUTRAL	NA	2	"ACSM3,ERI2"
TCGA.AG.3909.01A	16	20807644	20833034	14	0.1461	NEUTRAL	NA	3	"ACSM3,ERI2,LOC81691"
TCGA.AA.3509.01A	16	20812473	28634384	662	-0.113	NEUTRAL	NA	65	"ANKS4B,APOBR,AQP8,ARHGAP17,C16orf52,C16orf82,CACNG3,CCDC101,CDR2,CHP2,CLN3,COG7,CRYM,DCTN5,DCUN1D3,DNAH3,EARS2,EEF2K,EIF3C,EIF3CL,ERI2,ERN2,GGA2,GSG1L,GTF3C1,HS3ST2,HS3ST4,IGSF6,IL21R,IL27,IL4R,KDM8,KIAA0556,LCMT1,LOC81691,LYRM1,METTL9,NDUFAB1,NPIPB3,NPIPB5,NPIPB6,NSMCE1,NUPR1,OTOA,PALB2,PDZD9,PLK1,POLR3E,PRKCB,RBBP6,SBK1,SCNN1B,SCNN1G,SLC5A11,SULT1A1,SULT1A2,TMEM159,TNRC6A,UBFD1,UQCRC2,USP31,VWA3A,XPO6,ZKSCAN2,ZP2"
TCGA.AZ.4684.01A	16	20812473	90142216	4613	-0.0604	NEUTRAL	NA	533	Too-Many
TCGA.AG.A01W.01A	16	20834333	20898115	17	-0.2708	NEUTRAL	NA	2	"DCUN1D3,LOC81691"
TCGA.AA.A00D.01A	16	20851025	20986508	25	0.3005	NEUTRAL	NA	4	"DCUN1D3,DNAH3,LOC81691,LYRM1"
TCGA.AG.A01W.01A	16	20919008	20945802	6	-0.1861	NEUTRAL	NA	2	"DNAH3,LYRM1"
TCGA.AG.A01W.01A	16	20949858	20970466	9	0.3112	NEUTRAL	NA	1	DNAH3
TCGA.AG.A01W.01A	16	20973196	21117557	34	-0.2156	NEUTRAL	NA	1	DNAH3
TCGA.AG.3909.01A	16	20990603	21014377	8	-0.058	NEUTRAL	NA	1	DNAH3
TCGA.CK.5914.01A	16	20994005	21014377	7	-0.1373	NEUTRAL	NA	1	DNAH3
TCGA.AG.A00C.01A	16	21008553	21122899	31	-0.1027	NEUTRAL	NA	1	DNAH3
TCGA.AA.A01Q.01A	16	21008553	21289364	69	0.3125	NEUTRAL	NA	5	"ANKS4B,CRYM,DNAH3,TMEM159,ZP2"
TCGA.AG.4009.01A	16	21014377	23497975	254	0.0279	NEUTRAL	NA	23	"ANKS4B,C16orf52,CDR2,COG7,CRYM,DNAH3,EEF2K,GGA2,HS3ST2,IGSF6,METTL9,NPIPB3,NPIPB5,OTOA,PDZD9,POLR3E,SCNN1B,SCNN1G,TMEM159,UQCRC2,USP31,VWA3A,ZP2"
TCGA.AA.A00D.01A	16	21035878	21288702	63	0.2518	NEUTRAL	NA	5	"ANKS4B,CRYM,DNAH3,TMEM159,ZP2"
TCGA.AG.A01W.01A	16	21118344	21168894	15	0.181	NEUTRAL	NA	1	DNAH3
TCGA.AG.A00C.01A	16	21123273	21185323	16	0.2681	NEUTRAL	NA	2	"DNAH3,TMEM159"
TCGA.AG.A01W.01A	16	21177548	21671812	45	-0.2115	NEUTRAL	NA	7	"ANKS4B,CRYM,IGSF6,METTL9,NPIPB3,TMEM159,ZP2"
TCGA.AG.A00C.01A	16	21190735	21278845	19	-0.1987	NEUTRAL	NA	4	"ANKS4B,CRYM,TMEM159,ZP2"
TCGA.AA.A017.01A	16	21270054	70688399	2652	-0.1004	NEUTRAL	NA	370	Too-Many
TCGA.AF.3913	16	21273091	29128461	2130	-0.0047	NEUTRAL	NA	67	"APOBR,AQP8,ARHGAP17,ATP2A1,ATXN2L,C16orf52,C16orf82,CACNG3,CCDC101,CD19,CDR2,CHP2,CLN3,COG7,CRYM,DCTN5,EARS2,EEF2K,EIF3C,EIF3CL,ERN2,GGA2,GSG1L,GTF3C1,HS3ST2,HS3ST4,IGSF6,IL21R,IL27,IL4R,KDM8,KIAA0556,LAT,LCMT1,METTL9,NDUFAB1,NFATC2IP,NPIPB3,NPIPB5,NPIPB6,NPIPB9,NSMCE1,NUPR1,OTOA,PALB2,PDZD9,PLK1,POLR3E,PRKCB,RABEP2,RBBP6,SBK1,SCNN1B,SCNN1G,SH2B1,SLC5A11,SPNS1,SULT1A1,SULT1A2,TNRC6A,TUFM,UBFD1,UQCRC2,USP31,VWA3A,XPO6,ZKSCAN2"
TCGA.F4.6808	16	21605966	79036735	13015	0.0058	NEUTRAL	NA	423	Too-Many
TCGA.AY.6196	16	21620269	22625635	80	0.2833	NEUTRAL	NA	11	"C16orf52,CDR2,EEF2K,IGSF6,METTL9,NPIPB5,OTOA,PDZD9,POLR3E,UQCRC2,VWA3A"
TCGA.AG.A01W.01A	16	21679272	21894937	12	0.2644	NEUTRAL	NA	1	OTOA
TCGA.AG.A00C.01A	16	21689785	23573898	188	-0.0121	NEUTRAL	NA	17	"C16orf52,CDR2,COG7,EARS2,EEF2K,GGA2,HS3ST2,NPIPB5,OTOA,PDZD9,POLR3E,SCNN1B,SCNN1G,UBFD1,UQCRC2,USP31,VWA3A"
TCGA.AA.A00D.01A	16	21690260	23404505	117	0.2648	NEUTRAL	NA	14	"C16orf52,CDR2,COG7,EEF2K,HS3ST2,NPIPB5,OTOA,PDZD9,POLR3E,SCNN1B,SCNN1G,UQCRC2,USP31,VWA3A"
TCGA.AG.A01W.01A	16	21899338	21914009	6	-0.1289	NEUTRAL	NA	0	None
TCGA.DM.A1D6	16	21947786	22289597	37	0.0749	NEUTRAL	NA	5	"C16orf52,EEF2K,PDZD9,UQCRC2,VWA3A"
TCGA.AG.A01W.01A	16	22011380	22237599	60	-0.3193	NEUTRAL	NA	4	"C16orf52,EEF2K,PDZD9,VWA3A"
TCGA.DY.A1DG	16	22052002	22712978	56	0.0321	NEUTRAL	NA	6	"C16orf52,CDR2,EEF2K,NPIPB5,POLR3E,VWA3A"
TCGA.AA.A010.01A	16	22103864	22126619	7	0.0753	NEUTRAL	NA	1	VWA3A
TCGA.AA.A010.01A	16	22149644	22166838	11	0.1629	NEUTRAL	NA	1	VWA3A
TCGA.AG.A01W.01A	16	22241627	23111133	30	0.3629	NEUTRAL	NA	6	"CDR2,EEF2K,HS3ST2,NPIPB5,POLR3E,USP31"
TCGA.AA.A00N.01A	16	22295157	22328241	11	0.0481	NEUTRAL	NA	2	"EEF2K,POLR3E"
TCGA.AG.3909.01A	16	22295157	22334112	13	0.0751	NEUTRAL	NA	2	"EEF2K,POLR3E"
TCGA.DM.A1D6	16	22296462	24338108	548	-0.3151	NEUTRAL	NA	20	"CACNG3,CDR2,CHP2,COG7,DCTN5,EARS2,EEF2K,ERN2,GGA2,HS3ST2,NDUFAB1,NPIPB5,PALB2,PLK1,POLR3E,PRKCB,SCNN1B,SCNN1G,UBFD1,USP31"
TCGA.AA.3930.01A	16	22314206	23221034	47	0.2166	NEUTRAL	NA	6	"CDR2,HS3ST2,NPIPB5,POLR3E,SCNN1G,USP31"
TCGA.AG.3891.01A	16	22316401	23119316	40	-0.1515	NEUTRAL	NA	5	"CDR2,HS3ST2,NPIPB5,POLR3E,USP31"
TCGA.AA.A010.01A	16	22339771	22376171	7	-0.289	NEUTRAL	NA	2	"CDR2,POLR3E"
TCGA.AG.3909.01A	16	22358247	22385490	5	0.2971	NEUTRAL	NA	1	CDR2
TCGA.AA.A02W.01A	16	22376171	23563469	80	0.1079	NEUTRAL	NA	9	"CDR2,COG7,EARS2,GGA2,HS3ST2,NPIPB5,SCNN1B,SCNN1G,USP31"
TCGA.5M.AATA	16	22390260	23177765	190	-0.4079	NEUTRAL	NA	3	"HS3ST2,NPIPB5,USP31"
TCGA.AA.3527	16	22647296	70833948	9456	0.3172	NEUTRAL	NA	359	Too-Many
TCGA.AY.6196	16	22703861	90163274	18849	0.1131	NEUTRAL	NA	512	Too-Many
TCGA.AG.3726	16	22712978	24274390	484	0.3022	NEUTRAL	NA	16	"CACNG3,CHP2,COG7,DCTN5,EARS2,ERN2,GGA2,HS3ST2,NDUFAB1,PALB2,PLK1,PRKCB,SCNN1B,SCNN1G,UBFD1,USP31"
TCGA.AF.6655	16	22712978	70927077	9476	0.1972	NEUTRAL	NA	360	Too-Many
TCGA.AA.3518	16	22712978	78497939	12375	-0.0038	NEUTRAL	NA	412	Too-Many
TCGA.AD.6888	16	22712978	90163274	19051	-0.0393	NEUTRAL	NA	512	Too-Many
TCGA.D5.6529	16	22712978	90163274	19055	-0.2315	NEUTRAL	NA	512	Too-Many
TCGA.DY.A1DG	16	22718385	70842096	9459	0.3297	NEUTRAL	NA	360	Too-Many
TCGA.AH.6544	16	22723663	71143486	9528	0	NEUTRAL	NA	360	Too-Many
TCGA.AA.A010.01A	16	23096134	23226393	21	-0.1673	NEUTRAL	NA	2	"SCNN1G,USP31"
TCGA.AG.A01W.01A	16	23112944	29721564	503	-0.1908	NEUTRAL	NA	61	"APOBR,AQP8,ARHGAP17,ATP2A1,ATXN2L,BOLA2,BOLA2B,C16orf82,CACNG3,CCDC101,CD19,CHP2,CLN3,COG7,DCTN5,EARS2,EIF3C,EIF3CL,ERN2,GGA2,GSG1L,GTF3C1,HS3ST4,IL21R,IL27,IL4R,KDM8,KIAA0556,LAT,LCMT1,NDUFAB1,NFATC2IP,NPIPB6,NPIPB9,NSMCE1,NUPR1,PALB2,PLK1,PRKCB,QPRT,RABEP2,RBBP6,SBK1,SCNN1B,SCNN1G,SH2B1,SLC5A11,SLX1A,SLX1B,SPN,SPNS1,SULT1A1,SULT1A2,SULT1A3,SULT1A4,TNRC6A,TUFM,UBFD1,USP31,XPO6,ZKSCAN2"
TCGA.5M.AATA	16	23191249	23322444	23	0.0787	NEUTRAL	NA	2	"SCNN1B,SCNN1G"
TCGA.AG.3909.01A	16	23197541	23208538	5	0.2203	NEUTRAL	NA	1	SCNN1G
TCGA.AG.3891.01A	16	23197541	28328692	356	0.1528	NEUTRAL	NA	32	"AQP8,ARHGAP17,C16orf82,CACNG3,CHP2,COG7,DCTN5,EARS2,ERN2,GGA2,GSG1L,GTF3C1,HS3ST4,IL21R,IL4R,KDM8,KIAA0556,LCMT1,NDUFAB1,NSMCE1,PALB2,PLK1,PRKCB,RBBP6,SBK1,SCNN1B,SCNN1G,SLC5A11,TNRC6A,UBFD1,XPO6,ZKSCAN2"
TCGA.5M.AATA	16	23324025	24997387	494	0.3347	NEUTRAL	NA	17	"ARHGAP17,CACNG3,CHP2,COG7,DCTN5,EARS2,ERN2,GGA2,NDUFAB1,PALB2,PLK1,PRKCB,RBBP6,SCNN1B,SLC5A11,TNRC6A,UBFD1"
TCGA.AG.3909.01A	16	23388425	23430002	14	-0.2344	NEUTRAL	NA	2	"COG7,SCNN1B"
TCGA.AA.A00D.01A	16	23428246	23497285	19	0.2428	NEUTRAL	NA	2	"COG7,GGA2"
TCGA.AA.A00N.01A	16	23428246	23569272	35	0.2884	NEUTRAL	NA	4	"COG7,EARS2,GGA2,UBFD1"
TCGA.AA.A010.01A	16	23478860	23640463	42	0.0139	NEUTRAL	NA	5	"EARS2,GGA2,NDUFAB1,PALB2,UBFD1"
TCGA.AG.4009.01A	16	23499875	23581749	18	-0.429	NEUTRAL	NA	3	"EARS2,GGA2,UBFD1"
TCGA.AA.A02W.01A	16	23578251	24919234	121	0.2563	NEUTRAL	NA	12	"CACNG3,CHP2,DCTN5,ERN2,NDUFAB1,PALB2,PLK1,PRKCB,RBBP6,SLC5A11,TNRC6A,UBFD1"
TCGA.AG.4009.01A	16	23593549	24046708	54	0.1263	NEUTRAL	NA	7	"CHP2,DCTN5,ERN2,NDUFAB1,PALB2,PLK1,PRKCB"
TCGA.AG.A00C.01A	16	23607406	23649134	12	0.229	NEUTRAL	NA	2	"NDUFAB1,PALB2"
TCGA.AG.3909.01A	16	23607406	23847446	46	0.1185	NEUTRAL	NA	7	"CHP2,DCTN5,ERN2,NDUFAB1,PALB2,PLK1,PRKCB"
TCGA.AG.A00C.01A	16	23652356	23718025	26	-0.1267	NEUTRAL	NA	4	"DCTN5,ERN2,PALB2,PLK1"
TCGA.CK.5914.01A	16	23652356	23722206	29	-9.00E-04	NEUTRAL	NA	4	"DCTN5,ERN2,PALB2,PLK1"
TCGA.AA.A00N.01A	16	23652356	24135104	44	0.0035	NEUTRAL	NA	6	"CHP2,DCTN5,ERN2,PALB2,PLK1,PRKCB"
TCGA.A6.6648	16	23662795	90163274	18795	-0.0347	NEUTRAL	NA	502	Too-Many
TCGA.AA.A00D.01A	16	23695163	24372631	44	0.3422	NEUTRAL	NA	5	"CACNG3,CHP2,ERN2,PLK1,PRKCB"
TCGA.AG.A00C.01A	16	23847446	24557434	24	-0.0844	NEUTRAL	NA	3	"CACNG3,PRKCB,RBBP6"
TCGA.AA.A010.01A	16	23999769	24741067	36	-0.1143	NEUTRAL	NA	4	"CACNG3,PRKCB,RBBP6,TNRC6A"
TCGA.A6.3807	16	24017633	90163274	18581	-0.0036	NEUTRAL	NA	498	Too-Many
TCGA.AG.4009.01A	16	24165997	24557434	15	0.0254	NEUTRAL	NA	3	"CACNG3,PRKCB,RBBP6"
TCGA.AG.3726	16	24275387	27371948	1217	0.0055	NEUTRAL	NA	13	"AQP8,ARHGAP17,C16orf82,CACNG3,HS3ST4,IL4R,KDM8,LCMT1,NSMCE1,RBBP6,SLC5A11,TNRC6A,ZKSCAN2"
TCGA.DM.A1D6	16	24340690	24527549	63	0.0065	NEUTRAL	NA	1	CACNG3
TCGA.CK.5914.01A	16	24551896	24578456	12	-0.4825	NEUTRAL	NA	1	RBBP6
TCGA.AG.3611.01A	16	24557434	24579064	12	0.115	NEUTRAL	NA	1	RBBP6
TCGA.AG.4009.01A	16	24761994	25251086	73	0.0714	NEUTRAL	NA	6	"AQP8,ARHGAP17,LCMT1,SLC5A11,TNRC6A,ZKSCAN2"
TCGA.AG.A00C.01A	16	24769571	24917940	32	-0.1044	NEUTRAL	NA	2	"SLC5A11,TNRC6A"
TCGA.AA.A00D.01A	16	24815979	28601870	180	0.1871	NEUTRAL	NA	25	"APOBR,AQP8,ARHGAP17,C16orf82,CCDC101,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,HS3ST4,IL21R,IL27,IL4R,KDM8,KIAA0556,LCMT1,NPIPB6,NSMCE1,NUPR1,SBK1,SLC5A11,TNRC6A,XPO6,ZKSCAN2"
TCGA.AA.A02W.01A	16	24920244	28919883	246	-0.2702	NEUTRAL	NA	32	"APOBR,AQP8,ARHGAP17,ATP2A1,ATXN2L,C16orf82,CCDC101,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,HS3ST4,IL21R,IL27,IL4R,KDM8,KIAA0556,LCMT1,NPIPB6,NPIPB9,NSMCE1,NUPR1,RABEP2,SBK1,SH2B1,SLC5A11,SULT1A1,SULT1A2,TUFM,XPO6,ZKSCAN2"
TCGA.AG.A00C.01A	16	24953270	25239693	31	-0.0445	NEUTRAL	NA	3	"AQP8,ARHGAP17,LCMT1"
TCGA.5M.AATA	16	25002599	28922148	1319	0.0101	NEUTRAL	NA	31	"APOBR,AQP8,ARHGAP17,ATP2A1,ATXN2L,C16orf82,CCDC101,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,HS3ST4,IL21R,IL27,IL4R,KDM8,KIAA0556,LCMT1,NPIPB6,NPIPB9,NSMCE1,NUPR1,RABEP2,SBK1,SH2B1,SULT1A1,SULT1A2,TUFM,XPO6,ZKSCAN2"
TCGA.AA.A01Q.01A	16	25228303	25239693	6	0.341	NEUTRAL	NA	1	AQP8
TCGA.AA.A01Q.01A	16	25251086	27221403	10	-0.4216	NEUTRAL	NA	4	"C16orf82,HS3ST4,KDM8,ZKSCAN2"
TCGA.CK.5914.01A	16	25251086	27474796	45	0.3739	NEUTRAL	NA	8	"C16orf82,GTF3C1,HS3ST4,IL21R,IL4R,KDM8,NSMCE1,ZKSCAN2"
TCGA.AM.5820	16	25506953	34197817	1445	0.0745	NEUTRAL	NA	124	Too-Many
TCGA.DM.A28F	16	25629358	78463317	11475	0.3301	NEUTRAL	NA	389	Too-Many
TCGA.AG.4009.01A	16	25703727	28157367	115	0.1677	NEUTRAL	NA	10	"C16orf82,GSG1L,GTF3C1,HS3ST4,IL21R,IL4R,KDM8,KIAA0556,NSMCE1,XPO6"
TCGA.AG.A00C.01A	16	25703727	28606672	155	-0.1615	NEUTRAL	NA	20	"APOBR,C16orf82,CCDC101,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,HS3ST4,IL21R,IL27,IL4R,KDM8,KIAA0556,NPIPB6,NSMCE1,NUPR1,SBK1,SULT1A2,XPO6"
TCGA.G4.6303	16	26976217	29841224	569	0.3582	NEUTRAL	NA	45	"APOBR,ATP2A1,ATXN2L,BOLA2,BOLA2B,C16orf54,C16orf82,CCDC101,CD19,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,IL21R,IL27,IL4R,KDM8,KIAA0556,KIF22,LAT,MAZ,MVP,NFATC2IP,NPIPB6,NPIPB9,NSMCE1,NUPR1,PAGR1,PRRT2,QPRT,RABEP2,SBK1,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SULT1A1,SULT1A2,SULT1A3,SULT1A4,TUFM,XPO6,ZG16"
TCGA.DM.A1D8	16	27075914	29848416	508	0.2674	NEUTRAL	NA	45	"APOBR,ATP2A1,ATXN2L,BOLA2,BOLA2B,C16orf54,C16orf82,CCDC101,CD19,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,IL21R,IL27,IL4R,KDM8,KIAA0556,KIF22,LAT,MAZ,MVP,NFATC2IP,NPIPB6,NPIPB9,NSMCE1,NUPR1,PAGR1,PRRT2,QPRT,RABEP2,SBK1,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SULT1A1,SULT1A2,SULT1A3,SULT1A4,TUFM,XPO6,ZG16"
TCGA.CA.5254	16	27233017	35205716	742	0.26	NEUTRAL	NA	122	Too-Many
TCGA.AG.3726	16	27373557	31137711	486	0.3476	NEUTRAL	NA	98	"ALDOA,APOBR,ASPHD1,ATP2A1,ATXN2L,BCKDK,BCL7C,BOLA2,BOLA2B,C16orf54,C16orf92,C16orf93,CCDC101,CD19,CD2BP2,CDIPT,CLN3,CORO1A,CTF1,DCTPP1,DOC2A,EIF3C,EIF3CL,FAM57B,FBRS,FBXL19,GDPD3,GSG1L,GTF3C1,HIRIP3,HSD3B7,IL21R,IL27,IL4R,INO80E,ITGAL,KAT8,KCTD13,KIAA0556,KIF22,LAT,LOC730183,MAPK3,MAZ,MVP,MYLPF,NFATC2IP,NPIPB6,NPIPB9,NUPR1,ORAI3,PAGR1,PHKG2,PPP4C,PRR14,PRRT2,PRSS53,QPRT,RABEP2,RNF40,SBK1,SEPHS2,SEPT1,SETD1A,SEZ6L2,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SRCAP,STX1B,STX4,SULT1A1,SULT1A2,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,TMEM265,TUFM,VKORC1,XPO6,YPEL3,ZG16,ZNF48,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.QG.A5Z1	16	27385479	90163274	17186	-0.0268	NEUTRAL	NA	484	Too-Many
TCGA.DM.A1D6	16	27448400	32482954	561	0.2289	NEUTRAL	NA	116	Too-Many
TCGA.AG.3909.01A	16	27472639	27495480	13	0.0517	NEUTRAL	NA	1	GTF3C1
TCGA.CK.5914.01A	16	27475589	27503612	15	-0.5058	NEUTRAL	NA	1	GTF3C1
TCGA.D5.6922	16	27488193	90163274	17273	0.2549	NEUTRAL	NA	483	Too-Many
TCGA.AA.3693	16	27594424	27890978	84	-0.434	NEUTRAL	NA	2	"GSG1L,KIAA0556"
TCGA.AG.3909.01A	16	27777589	27818744	10	0.0107	NEUTRAL	NA	2	"GSG1L,KIAA0556"
TCGA.AA.A01Q.01A	16	27802639	28550069	35	-0.3425	NEUTRAL	NA	10	"APOBR,CLN3,EIF3C,EIF3CL,GSG1L,IL27,NPIPB6,NUPR1,SBK1,XPO6"
TCGA.AA.3693	16	27895236	70850892	7621	0.0181	NEUTRAL	NA	329	Too-Many
TCGA.AG.4009.01A	16	28163940	28222591	8	-0.2261	NEUTRAL	NA	1	XPO6
TCGA.AF.2692	16	28181846	31593769	296	-0.3239	NEUTRAL	NA	109	Too-Many
TCGA.AG.4009.01A	16	28403036	28506438	11	0.0557	NEUTRAL	NA	4	"APOBR,CLN3,EIF3C,EIF3CL"
TCGA.AG.3891.01A	16	28403036	28518037	18	0.0038	NEUTRAL	NA	5	"APOBR,CLN3,EIF3C,EIF3CL,IL27"
TCGA.AG.4009.01A	16	28549321	28909304	58	-0.2774	NEUTRAL	NA	11	"ATP2A1,ATXN2L,CCDC101,EIF3C,EIF3CL,NPIPB9,NUPR1,SH2B1,SULT1A1,SULT1A2,TUFM"
TCGA.AG.3891.01A	16	28549321	30795157	355	0.3688	NEUTRAL	NA	73	"ALDOA,ASPHD1,ATP2A1,ATXN2L,BOLA2,BOLA2B,C16orf54,C16orf92,C16orf93,CCDC101,CD19,CD2BP2,CDIPT,CORO1A,DCTPP1,DOC2A,EIF3C,EIF3CL,FAM57B,FBRS,GDPD3,HIRIP3,INO80E,ITGAL,KCTD13,KIF22,LAT,LOC730183,MAPK3,MAZ,MVP,MYLPF,NFATC2IP,NPIPB9,NUPR1,PAGR1,PHKG2,PPP4C,PRR14,PRRT2,QPRT,RABEP2,RNF40,SEPHS2,SEPT1,SEZ6L2,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SRCAP,SULT1A1,SULT1A2,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,TMEM265,TUFM,YPEL3,ZG16,ZNF48,ZNF629,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.AG.3909.01A	16	28604584	28734468	9	-0.2689	NEUTRAL	NA	4	"EIF3C,EIF3CL,SULT1A1,SULT1A2"
TCGA.AG.A00C.01A	16	28617103	31234099	431	0.3103	NEUTRAL	NA	90	"ALDOA,ASPHD1,ATP2A1,ATXN2L,BCKDK,BCL7C,BOLA2,BOLA2B,C16orf54,C16orf92,C16orf93,CD19,CD2BP2,CDIPT,CORO1A,CTF1,DCTPP1,DOC2A,EIF3C,EIF3CL,FAM57B,FBRS,FBXL19,FUS,GDPD3,HIRIP3,HSD3B7,INO80E,ITGAL,KAT8,KCTD13,KIF22,LAT,LOC730183,MAPK3,MAZ,MVP,MYLPF,NFATC2IP,NPIPB9,ORAI3,PAGR1,PHKG2,PPP4C,PRR14,PRRT2,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,QPRT,RABEP2,RNF40,SEPHS2,SEPT1,SETD1A,SEZ6L2,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SRCAP,STX1B,STX4,SULT1A1,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,TMEM265,TRIM72,TUFM,VKORC1,YPEL3,ZG16,ZNF48,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.AA.A010.01A	16	28711489	28909304	43	-0.1921	NEUTRAL	NA	7	"ATP2A1,ATXN2L,EIF3C,EIF3CL,NPIPB9,SH2B1,TUFM"
TCGA.AA.3509.01A	16	28734468	29679131	90	-0.0833	NEUTRAL	NA	19	"ATP2A1,ATXN2L,BOLA2,BOLA2B,CD19,EIF3C,EIF3CL,LAT,NFATC2IP,NPIPB9,RABEP2,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4,TUFM"
TCGA.CK.5914.01A	16	28841159	30495106	258	-0.2041	NEUTRAL	NA	51	"ALDOA,ASPHD1,ATP2A1,ATXN2L,BOLA2,BOLA2B,C16orf54,C16orf92,CD19,CD2BP2,CDIPT,CORO1A,DCTPP1,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,ITGAL,KCTD13,KIF22,LAT,MAPK3,MAZ,MVP,MYLPF,NFATC2IP,PAGR1,PPP4C,PRRT2,QPRT,RABEP2,SEPHS2,SEPT1,SEZ6L2,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,TUFM,YPEL3,ZG16,ZNF48,ZNF771"
TCGA.AA.A00N.01A	16	28845338	29830854	107	-0.4992	NEUTRAL	NA	23	"ATP2A1,ATXN2L,BOLA2,BOLA2B,C16orf54,CD19,KIF22,LAT,MAZ,NFATC2IP,PAGR1,PRRT2,QPRT,RABEP2,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4,TUFM,ZG16"
TCGA.AG.3909.01A	16	28855036	29816138	82	-0.2495	NEUTRAL	NA	19	"ATP2A1,BOLA2,BOLA2B,C16orf54,CD19,KIF22,LAT,NFATC2IP,QPRT,RABEP2,SH2B1,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4,TUFM,ZG16"
TCGA.AF.3914.01A	16	28898464	29811197	62	0.2844	NEUTRAL	NA	17	"ATP2A1,BOLA2,BOLA2B,C16orf54,CD19,KIF22,LAT,NFATC2IP,QPRT,RABEP2,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4,ZG16"
TCGA.AA.A010.01A	16	28911925	29681203	55	0.3135	NEUTRAL	NA	13	"ATP2A1,BOLA2,BOLA2B,CD19,LAT,NFATC2IP,RABEP2,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4"
TCGA.AG.4009.01A	16	28911925	29755560	50	0.0718	NEUTRAL	NA	15	"ATP2A1,BOLA2,BOLA2B,C16orf54,CD19,LAT,NFATC2IP,QPRT,RABEP2,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4"
TCGA.AA.A02W.01A	16	28922180	58757603	1410	0.2609	NEUTRAL	NA	199	Too-Many
TCGA.AA.A00L.01A	16	28992761	28997406	9	-0.0387	NEUTRAL	NA	2	"LAT,SPNS1"
TCGA.AA.A00D.01A	16	28993210	28997406	8	-0.2593	NEUTRAL	NA	2	"LAT,SPNS1"
TCGA.AA.A01Q.01A	16	28995056	29859101	39	-0.1219	NEUTRAL	NA	17	"BOLA2,BOLA2B,C16orf54,KIF22,LAT,MAZ,MVP,PAGR1,PRRT2,QPRT,SLX1A,SLX1B,SPN,SPNS1,SULT1A3,SULT1A4,ZG16"
TCGA.AA.A00L.01A	16	28997894	29808187	9	0.3649	NEUTRAL	NA	12	"BOLA2,BOLA2B,C16orf54,KIF22,LAT,QPRT,SLX1A,SLX1B,SPN,SULT1A3,SULT1A4,ZG16"
TCGA.CM.6166	16	29133895	66803096	6860	0.3466	NEUTRAL	NA	208	Too-Many
TCGA.AG.3890	16	29159434	29412502	35	-0.3749	NEUTRAL	NA	0	None
TCGA.QL.A97D	16	29184697	29283703	18	-0.3429	NEUTRAL	NA	0	None
TCGA.A6.6653	16	29250914	30780827	106	-0.319	NEUTRAL	NA	56	"ALDOA,ASPHD1,BOLA2,BOLA2B,C16orf54,C16orf92,C16orf93,CD2BP2,CDIPT,CORO1A,DCTPP1,DOC2A,FAM57B,FBRS,GDPD3,HIRIP3,INO80E,ITGAL,KCTD13,KIF22,LOC730183,MAPK3,MAZ,MVP,MYLPF,PAGR1,PHKG2,PPP4C,PRR14,PRRT2,QPRT,RNF40,SEPHS2,SEPT1,SEZ6L2,SLX1A,SLX1B,SPN,SRCAP,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,TMEM265,YPEL3,ZG16,ZNF48,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.DM.A1D7	16	29251860	90163274	17008	-0.0018	NEUTRAL	NA	458	Too-Many
TCGA.DY.A1H8	16	29251860	90163274	17009	-0.0131	NEUTRAL	NA	458	Too-Many
TCGA.QL.A97D	16	29287977	54265764	2632	0.1668	NEUTRAL	NA	129	Too-Many
TCGA.AF.3911	16	29358350	70874791	7404	0.3057	NEUTRAL	NA	306	Too-Many
TCGA.AG.3890	16	29580610	59353041	4393	0.1222	NEUTRAL	NA	194	Too-Many
TCGA.5M.AATA	16	29638640	30685088	80	-0.4422	NEUTRAL	NA	50	"ALDOA,ASPHD1,BOLA2,BOLA2B,C16orf54,C16orf92,CD2BP2,CDIPT,CORO1A,DCTPP1,DOC2A,FAM57B,FBRS,GDPD3,HIRIP3,INO80E,ITGAL,KCTD13,KIF22,MAPK3,MAZ,MVP,MYLPF,PAGR1,PPP4C,PRR14,PRRT2,QPRT,SEPHS2,SEPT1,SEZ6L2,SLX1A,SLX1B,SPN,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,YPEL3,ZG16,ZNF48,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.AA.3509.01A	16	29705943	46712828	521	-0.0492	NEUTRAL	NA	94	"AHSP,ALDOA,ARMC5,ASPHD1,BCKDK,BCL7C,BOLA2,BOLA2B,C16orf54,C16orf58,C16orf92,C16orf93,CD2BP2,CDIPT,CORO1A,COX6A2,CTF1,DCTPP1,DOC2A,FAM57B,FBRS,FBXL19,FUS,GDPD3,HIRIP3,HSD3B7,INO80E,ITGAD,ITGAL,ITGAM,ITGAX,KAT8,KCTD13,KIF22,LOC730183,MAPK3,MAZ,MVP,MYLPF,ORAI3,PAGR1,PHKG2,PPP4C,PRR14,PRRT2,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,QPRT,RNF40,SEPHS2,SEPT1,SETD1A,SEZ6L2,SHCBP1,SLC5A2,SLX1A,SLX1B,SRCAP,STX1B,STX4,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TGFB1I1,TMEM219,TMEM265,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,TRIM72,VKORC1,VPS35,YPEL3,ZG16,ZNF267,ZNF48,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF720,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785,ZNF843"
TCGA.AG.A01W.01A	16	29777961	29792056	7	0.2567	NEUTRAL	NA	1	ZG16
TCGA.AA.A00L.01A	16	29809678	29825637	9	-0.0373	NEUTRAL	NA	3	"KIF22,MAZ,PRRT2"
TCGA.AF.3914.01A	16	29816138	30099820	96	0.1893	NEUTRAL	NA	19	"ALDOA,ASPHD1,C16orf92,CDIPT,DOC2A,FAM57B,HIRIP3,INO80E,KCTD13,KIF22,MAZ,MVP,PAGR1,PPP4C,PRRT2,SEZ6L2,TAOK2,TBX6,TMEM219"
TCGA.AG.4009.01A	16	29818011	30081124	78	-0.0867	NEUTRAL	NA	16	"ALDOA,ASPHD1,C16orf92,CDIPT,DOC2A,FAM57B,HIRIP3,INO80E,KCTD13,MAZ,MVP,PAGR1,PRRT2,SEZ6L2,TAOK2,TMEM219"
TCGA.AA.3967.01A	16	29820813	50828096	777	0.2261	NEUTRAL	NA	115	Too-Many
TCGA.A6.3808.01A	16	29821348	29873860	22	0.1909	NEUTRAL	NA	5	"CDIPT,MAZ,MVP,PAGR1,PRRT2"
TCGA.AG.A01W.01A	16	29841961	30394099	98	-0.1291	NEUTRAL	NA	30	"ALDOA,ASPHD1,BOLA2,BOLA2B,C16orf92,CD2BP2,CDIPT,CORO1A,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,MAPK3,MVP,MYLPF,PPP4C,SEPT1,SEZ6L2,SLX1A,SLX1B,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,YPEL3,ZNF48"
TCGA.AG.A008.01A	16	29851457	31045070	258	0.1821	NEUTRAL	NA	57	"ALDOA,ASPHD1,BCL7C,BOLA2,BOLA2B,C16orf92,C16orf93,CD2BP2,CDIPT,CORO1A,CTF1,DCTPP1,DOC2A,FAM57B,FBRS,FBXL19,GDPD3,HIRIP3,HSD3B7,INO80E,ITGAL,KCTD13,LOC730183,MAPK3,MVP,MYLPF,ORAI3,PHKG2,PPP4C,PRR14,RNF40,SEPHS2,SEPT1,SETD1A,SEZ6L2,SLX1A,SLX1B,SRCAP,STX1B,STX4,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,TMEM265,YPEL3,ZNF48,ZNF629,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.DM.A1D8	16	29851737	35111584	293	-0.0132	NEUTRAL	NA	85	"AHSP,ALDOA,ARMC5,ASPHD1,BCKDK,BCL7C,BOLA2,BOLA2B,C16orf58,C16orf92,C16orf93,CD2BP2,CDIPT,CORO1A,COX6A2,CTF1,DCTPP1,DOC2A,FAM57B,FBRS,FBXL19,FUS,GDPD3,HIRIP3,HSD3B7,INO80E,ITGAD,ITGAL,ITGAM,ITGAX,KAT8,KCTD13,LOC730183,MAPK3,MVP,MYLPF,ORAI3,PHKG2,PPP4C,PRR14,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RNF40,SEPHS2,SEPT1,SETD1A,SEZ6L2,SLC5A2,SLX1A,SLX1B,SRCAP,STX1B,STX4,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TGFB1I1,TMEM219,TMEM265,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,TRIM72,VKORC1,YPEL3,ZNF267,ZNF48,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF720,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785,ZNF843"
TCGA.AA.A010.01A	16	29857145	29937059	32	0.3251	NEUTRAL	NA	5	"ASPHD1,CDIPT,KCTD13,MVP,SEZ6L2"
TCGA.AU.3779	16	29861446	90163274	16964	-0.0162	NEUTRAL	NA	449	Too-Many
TCGA.AG.3909.01A	16	29872380	29974447	27	-0.2449	NEUTRAL	NA	5	"ASPHD1,CDIPT,KCTD13,SEZ6L2,TMEM219"
TCGA.AA.A00L.01A	16	29883959	30485476	102	0.3086	NEUTRAL	NA	32	"ALDOA,ASPHD1,BOLA2,BOLA2B,C16orf92,CD2BP2,CORO1A,DCTPP1,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,ITGAL,KCTD13,MAPK3,MYLPF,PPP4C,SEPHS2,SEPT1,SEZ6L2,SLX1A,SLX1B,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,YPEL3,ZNF48,ZNF771"
TCGA.AA.A01Q.01A	16	29896860	29982713	18	0.0926	NEUTRAL	NA	4	"ASPHD1,KCTD13,SEZ6L2,TMEM219"
TCGA.AA.A010.01A	16	29974447	30087661	39	-0.3092	NEUTRAL	NA	9	"ALDOA,C16orf92,DOC2A,FAM57B,HIRIP3,INO80E,PPP4C,TAOK2,TMEM219"
TCGA.AA.A01Q.01A	16	29989043	30040694	27	-0.2461	NEUTRAL	NA	6	"C16orf92,DOC2A,FAM57B,HIRIP3,INO80E,TAOK2"
TCGA.A6.3808.01A	16	29996517	30770914	184	-0.0019	NEUTRAL	NA	41	"ALDOA,BOLA2,BOLA2B,C16orf92,C16orf93,CD2BP2,CORO1A,DCTPP1,DOC2A,FAM57B,FBRS,GDPD3,HIRIP3,INO80E,ITGAL,LOC730183,MAPK3,MYLPF,PHKG2,PPP4C,PRR14,SEPHS2,SEPT1,SLX1A,SLX1B,SRCAP,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM265,YPEL3,ZNF48,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.AG.3909.01A	16	30000877	30492713	80	-0.2299	NEUTRAL	NA	28	"ALDOA,BOLA2,BOLA2B,C16orf92,CD2BP2,CORO1A,DCTPP1,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,ITGAL,MAPK3,MYLPF,PPP4C,SEPHS2,SEPT1,SLX1A,SLX1B,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,YPEL3,ZNF48,ZNF771"
TCGA.AY.A8YK	16	30019374	70842096	7336	0.2003	NEUTRAL	NA	289	Too-Many
TCGA.AF.3914.01A	16	30102042	30127971	11	-0.2841	NEUTRAL	NA	4	"GDPD3,MAPK3,TBX6,YPEL3"
TCGA.AA.A010.01A	16	30133108	30134333	2	0.0072	NEUTRAL	NA	1	MAPK3
TCGA.AF.3914.01A	16	30198675	30370501	11	0.2262	NEUTRAL	NA	9	"BOLA2,BOLA2B,CD2BP2,CORO1A,SLX1A,SLX1B,SULT1A3,SULT1A4,TBC1D10B"
TCGA.F5.6811.01A	16	30271770	30490895	61	0.029	NEUTRAL	NA	9	"CD2BP2,DCTPP1,ITGAL,MYLPF,SEPHS2,SEPT1,TBC1D10B,ZNF48,ZNF771"
TCGA.EI.6511	16	30320306	70855632	7339	-0.0094	NEUTRAL	NA	273	Too-Many
TCGA.AG.4009.01A	16	30435545	30484088	4	-0.1369	NEUTRAL	NA	3	"DCTPP1,ITGAL,SEPHS2"
TCGA.AA.A01Q.01A	16	30435545	30731432	67	-0.1321	NEUTRAL	NA	13	"DCTPP1,FBRS,ITGAL,LOC730183,PRR14,SEPHS2,SRCAP,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.AF.3914.01A	16	30440338	30662902	43	0.1258	NEUTRAL	NA	10	"DCTPP1,ITGAL,PRR14,SEPHS2,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.AG.A01W.01A	16	30443290	30590486	34	0.2954	NEUTRAL	NA	6	"ITGAL,SEPHS2,ZNF688,ZNF747,ZNF764,ZNF768"
TCGA.AG.4009.01A	16	30486597	30515439	11	0.2641	NEUTRAL	NA	1	ITGAL
TCGA.AA.A00N.01A	16	30500368	30521661	9	0.252	NEUTRAL	NA	1	ITGAL
TCGA.CK.5914.01A	16	30515439	30731432	61	-0.0664	NEUTRAL	NA	11	"FBRS,ITGAL,LOC730183,PRR14,SRCAP,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.AG.4009.01A	16	30516496	30528247	6	-0.075	NEUTRAL	NA	1	ITGAL
TCGA.AA.A00L.01A	16	30528247	30680391	32	0.1534	NEUTRAL	NA	9	"FBRS,ITGAL,PRR14,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.AG.3909.01A	16	30532766	30722031	36	-0.1791	NEUTRAL	NA	11	"FBRS,ITGAL,LOC730183,PRR14,SRCAP,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.AG.3906.01A	16	30537634	30676005	22	0.1236	NEUTRAL	NA	8	"FBRS,PRR14,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.G4.6303	16	30546487	32483005	158	0.3403	NEUTRAL	NA	46	"AHSP,ARMC5,BCKDK,BCL7C,C16orf58,C16orf93,COX6A2,CTF1,FBRS,FBXL19,FUS,HSD3B7,ITGAD,ITGAM,ITGAX,KAT8,LOC730183,ORAI3,PHKG2,PRR14,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RNF40,SETD1A,SLC5A2,SRCAP,STX1B,STX4,TGFB1I1,TMEM265,TP53TG3D,TRIM72,VKORC1,ZNF267,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF720,ZNF764,ZNF785,ZNF843"
TCGA.AG.A01W.01A	16	30591211	30626348	11	-0.1657	NEUTRAL	NA	2	"ZNF689,ZNF785"
TCGA.AG.4009.01A	16	30593863	30662902	8	0.2344	NEUTRAL	NA	3	"PRR14,ZNF689,ZNF785"
TCGA.AA.A02K.01A	16	30621117	30682985	17	-0.0721	NEUTRAL	NA	3	"FBRS,PRR14,ZNF689"
TCGA.AG.A01W.01A	16	30670303	30880050	43	-0.0916	NEUTRAL	NA	9	"BCL7C,C16orf93,FBRS,LOC730183,PHKG2,RNF40,SRCAP,TMEM265,ZNF629"
TCGA.AA.A02K.01A	16	30683710	30990417	87	0.2931	NEUTRAL	NA	12	"BCL7C,C16orf93,CTF1,FBXL19,LOC730183,ORAI3,PHKG2,RNF40,SETD1A,SRCAP,TMEM265,ZNF629"
TCGA.AG.3906.01A	16	30712073	30749212	27	0.2359	NEUTRAL	NA	1	SRCAP
TCGA.AG.4009.01A	16	30715374	30722031	5	-0.3831	NEUTRAL	NA	1	SRCAP
TCGA.AF.3914.01A	16	30718462	30783154	46	0.2759	NEUTRAL	NA	5	"C16orf93,PHKG2,RNF40,SRCAP,TMEM265"
TCGA.AG.3909.01A	16	30722853	30731432	6	0.2234	NEUTRAL	NA	1	SRCAP
TCGA.AG.4009.01A	16	30722853	30731432	6	-0.1499	NEUTRAL	NA	1	SRCAP
TCGA.AA.A010.01A	16	30731432	30899168	45	-0.0208	NEUTRAL	NA	7	"BCL7C,C16orf93,PHKG2,RNF40,SRCAP,TMEM265,ZNF629"
TCGA.AA.A00D.01A	16	30731987	30736057	7	-0.2456	NEUTRAL	NA	1	SRCAP
TCGA.AA.A00L.01A	16	30731987	30736057	7	0.0461	NEUTRAL	NA	1	SRCAP
TCGA.AG.4009.01A	16	30731987	30770914	23	0.2589	NEUTRAL	NA	4	"C16orf93,PHKG2,SRCAP,TMEM265"
TCGA.5M.AATA	16	30739918	31284321	54	0.3546	NEUTRAL	NA	27	"BCKDK,BCL7C,C16orf93,CTF1,FBXL19,FUS,HSD3B7,ITGAM,KAT8,ORAI3,PHKG2,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RNF40,SETD1A,SRCAP,STX1B,STX4,TMEM265,TRIM72,VKORC1,ZNF629,ZNF646,ZNF668"
TCGA.AA.A01Q.01A	16	30740644	30960559	40	-0.2239	NEUTRAL	NA	10	"BCL7C,C16orf93,CTF1,FBXL19,ORAI3,PHKG2,RNF40,SRCAP,TMEM265,ZNF629"
TCGA.AG.3909.01A	16	30744584	30749212	5	0.2863	NEUTRAL	NA	1	SRCAP
TCGA.CK.5914.01A	16	30744584	31196233	131	-0.2991	NEUTRAL	NA	23	"BCKDK,BCL7C,C16orf93,CTF1,FBXL19,FUS,HSD3B7,KAT8,ORAI3,PHKG2,PRSS36,PRSS53,PRSS8,RNF40,SETD1A,SRCAP,STX1B,STX4,TMEM265,VKORC1,ZNF629,ZNF646,ZNF668"
TCGA.AG.3906.01A	16	30762389	30783154	21	-0.1023	NEUTRAL	NA	3	"C16orf93,PHKG2,RNF40"
TCGA.AG.4009.01A	16	30771577	30783154	13	-0.1183	NEUTRAL	NA	3	"C16orf93,PHKG2,RNF40"
TCGA.AG.3883	16	30780827	78698237	10469	-0.2783	NEUTRAL	NA	303	Too-Many
TCGA.A6.6653	16	30785823	71066842	7375	-0.0266	NEUTRAL	NA	251	Too-Many
TCGA.AG.3909.01A	16	30795157	30953399	14	0.2662	NEUTRAL	NA	4	"BCL7C,CTF1,FBXL19,ZNF629"
TCGA.AG.A01W.01A	16	30911586	31216300	84	0.0114	NEUTRAL	NA	17	"BCKDK,CTF1,FBXL19,FUS,HSD3B7,KAT8,ORAI3,PRSS36,PRSS53,PRSS8,PYCARD,SETD1A,STX1B,STX4,VKORC1,ZNF646,ZNF668"
TCGA.F5.6811.01A	16	30951772	32766480	176	-0.0349	NEUTRAL	NA	34	"AHSP,ARMC5,BCKDK,C16orf58,COX6A2,FBXL19,FUS,HSD3B7,ITGAD,ITGAM,ITGAX,KAT8,ORAI3,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,SETD1A,SLC5A2,STX1B,STX4,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,TRIM72,VKORC1,ZNF267,ZNF646,ZNF668,ZNF720,ZNF843"
TCGA.A6.3808.01A	16	30960559	31234099	100	-0.3027	NEUTRAL	NA	17	"BCKDK,FUS,HSD3B7,KAT8,ORAI3,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,SETD1A,STX1B,STX4,TRIM72,VKORC1,ZNF646,ZNF668"
TCGA.AA.A01Q.01A	16	30975434	30982662	6	-0.3914	NEUTRAL	NA	1	SETD1A
TCGA.AG.3909.01A	16	30975434	31105509	41	-0.0467	NEUTRAL	NA	8	"HSD3B7,PRSS53,SETD1A,STX1B,STX4,VKORC1,ZNF646,ZNF668"
TCGA.AA.A02K.01A	16	30991245	31008223	12	-0.0667	NEUTRAL	NA	3	"HSD3B7,SETD1A,STX1B"
TCGA.AA.A02K.01A	16	31008763	31160373	46	0.3177	NEUTRAL	NA	10	"BCKDK,KAT8,PRSS36,PRSS53,PRSS8,STX1B,STX4,VKORC1,ZNF646,ZNF668"
TCGA.A6.6650	16	31009587	90163274	15643	-0.0255	NEUTRAL	NA	395	Too-Many
TCGA.AA.3860	16	31011182	31310371	31	0.0082	NEUTRAL	NA	15	"BCKDK,FUS,ITGAM,KAT8,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,STX1B,STX4,TRIM72,VKORC1,ZNF646,ZNF668"
TCGA.AA.A01Q.01A	16	31021603	31235490	60	-0.3134	NEUTRAL	NA	14	"BCKDK,FUS,KAT8,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,STX1B,STX4,TRIM72,VKORC1,ZNF646,ZNF668"
TCGA.AF.3914.01A	16	31045070	31095862	13	0.1317	NEUTRAL	NA	4	"PRSS53,STX4,ZNF646,ZNF668"
TCGA.AG.A008.01A	16	31049200	80718406	2448	0.1604	NEUTRAL	NA	297	Too-Many
TCGA.T9.A92H	16	31083025	49057671	595	0.2092	NEUTRAL	NA	43	"ABCC11,ABCC12,AHSP,ARMC5,BCKDK,C16orf58,C16orf87,COX6A2,DNAJA2,FUS,GPT2,ITFG1,ITGAD,ITGAM,ITGAX,KAT8,LONP2,MYLK3,N4BP1,NETO2,ORC6,PHKB,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,SHCBP1,SIAH1,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,TRIM72,VKORC1,VPS35,ZNF267,ZNF646,ZNF668,ZNF720,ZNF843"
TCGA.AG.3909.01A	16	31106663	31196233	27	-0.5119	NEUTRAL	NA	5	"BCKDK,FUS,KAT8,PRSS36,PRSS8"
TCGA.AG.3726	16	31166027	34197817	113	0.0239	NEUTRAL	NA	20	"AHSP,ARMC5,C16orf58,COX6A2,FUS,ITGAD,ITGAM,ITGAX,PYCARD,PYDC1,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,TRIM72,ZNF267,ZNF720,ZNF843"
TCGA.AF.3914.01A	16	31191442	31232131	19	0.0323	NEUTRAL	NA	4	"FUS,PYCARD,PYDC1,TRIM72"
TCGA.AG.3906.01A	16	31195129	31419712	64	0.0513	NEUTRAL	NA	7	"FUS,ITGAD,ITGAM,ITGAX,PYCARD,PYDC1,TRIM72"
TCGA.CK.5914.01A	16	31212866	31234099	7	-0.1977	NEUTRAL	NA	3	"PYCARD,PYDC1,TRIM72"
TCGA.AA.A00N.01A	16	31212866	31235490	9	-0.363	NEUTRAL	NA	3	"PYCARD,PYDC1,TRIM72"
TCGA.AG.3909.01A	16	31212866	31235490	8	-0.1892	NEUTRAL	NA	3	"PYCARD,PYDC1,TRIM72"
TCGA.AA.A02K.01A	16	31230363	90142205	3470	0.1145	NEUTRAL	NA	382	Too-Many
TCGA.AG.A00C.01A	16	31235490	31368301	27	-0.1856	NEUTRAL	NA	3	"ITGAM,ITGAX,TRIM72"
TCGA.AG.4009.01A	16	31235490	31427474	55	0.0309	NEUTRAL	NA	4	"ITGAD,ITGAM,ITGAX,TRIM72"
TCGA.AG.A01W.01A	16	31246915	31327184	34	-0.2553	NEUTRAL	NA	1	ITGAM
TCGA.AG.3891.01A	16	31271298	31429357	56	0.1118	NEUTRAL	NA	3	"ITGAD,ITGAM,ITGAX"
TCGA.AF.3914.01A	16	31272976	31289251	9	-0.0798	NEUTRAL	NA	1	ITGAM
TCGA.AA.A00A.01A	16	31287942	31370982	12	-0.2416	NEUTRAL	NA	2	"ITGAM,ITGAX"
TCGA.5M.AATA	16	31298938	48513823	415	-0.0094	NEUTRAL	NA	30	"ABCC11,ABCC12,AHSP,ARMC5,C16orf58,C16orf87,COX6A2,DNAJA2,GPT2,ITFG1,ITGAD,ITGAM,ITGAX,LONP2,MYLK3,NETO2,ORC6,PHKB,SHCBP1,SIAH1,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF720,ZNF843"
TCGA.AF.3914.01A	16	31308784	31366514	14	0.3481	NEUTRAL	NA	2	"ITGAM,ITGAX"
TCGA.CK.5914.01A	16	31336264	31418799	35	0.1338	NEUTRAL	NA	3	"ITGAD,ITGAM,ITGAX"
TCGA.AG.A01W.01A	16	31344790	33555583	46	0.1488	NEUTRAL	NA	15	"AHSP,ARMC5,C16orf58,COX6A2,ITGAD,ITGAX,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,ZNF267,ZNF720,ZNF843"
TCGA.A6.3808.01A	16	31366514	46731320	120	-0.4756	NEUTRAL	NA	18	"AHSP,ARMC5,C16orf58,COX6A2,ITGAD,ITGAX,ORC6,SHCBP1,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF720,ZNF843"
TCGA.AA.A01Q.01A	16	31366514	48220822	238	-0.0389	NEUTRAL	NA	27	"ABCC11,ABCC12,AHSP,ARMC5,C16orf58,C16orf87,COX6A2,DNAJA2,GPT2,ITFG1,ITGAD,ITGAX,MYLK3,NETO2,ORC6,PHKB,SHCBP1,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF720,ZNF843"
TCGA.AG.3909.01A	16	31367167	31388527	13	-0.21	NEUTRAL	NA	1	ITGAX
TCGA.AA.A00N.01A	16	31367167	31393085	18	-0.0759	NEUTRAL	NA	1	ITGAX
TCGA.AF.3914.01A	16	31367167	31473474	41	-0.1253	NEUTRAL	NA	5	"ARMC5,COX6A2,ITGAD,ITGAX,ZNF843"
TCGA.AG.A00C.01A	16	31370982	46637413	76	0.155	NEUTRAL	NA	16	"AHSP,ARMC5,C16orf58,COX6A2,ITGAD,ITGAX,SHCBP1,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,ZNF267,ZNF720,ZNF843"
TCGA.CK.5914.01A	16	31425721	31539761	43	-0.2399	NEUTRAL	NA	8	"AHSP,ARMC5,C16orf58,COX6A2,ITGAD,SLC5A2,TGFB1I1,ZNF843"
TCGA.D5.6535	16	31444749	34379277	100	-0.3641	NEUTRAL	NA	12	"AHSP,ARMC5,C16orf58,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,ZNF267,ZNF720,ZNF843"
TCGA.AA.3860	16	31444749	70814357	7221	0.0167	NEUTRAL	NA	224	Too-Many
TCGA.AG.3891.01A	16	31470809	31511928	25	0.0858	NEUTRAL	NA	4	"ARMC5,C16orf58,SLC5A2,TGFB1I1"
TCGA.AA.A010.01A	16	31470809	46746541	81	-0.2108	NEUTRAL	NA	15	"AHSP,ARMC5,C16orf58,MYLK3,ORC6,SHCBP1,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF720"
TCGA.AF.3914.01A	16	31487285	54145644	463	-0.056	NEUTRAL	NA	46	"ABCC11,ABCC12,ADCY7,AHSP,AKTIP,BRD7,C16orf58,C16orf78,C16orf87,C16orf97,CBLN1,CHD9,CNEP1R1,CYLD,DNAJA2,FTO,GPT2,HEATR3,ITFG1,LOC643802,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,RBL2,RPGRIP1L,SALL1,SHCBP1,SIAH1,SLC5A2,SNX20,TGFB1I1,TOX3,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF423,ZNF720"
TCGA.AG.3906.01A	16	31494416	46694414	39	-0.1918	NEUTRAL	NA	11	"AHSP,C16orf58,SHCBP1,SLC5A2,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF720"
TCGA.AA.A00Q.01A	16	31497042	31508123	11	0.0129	NEUTRAL	NA	2	"C16orf58,SLC5A2"
TCGA.AG.4009.01A	16	31498594	46655117	35	-0.1927	NEUTRAL	NA	10	"AHSP,C16orf58,SHCBP1,SLC5A2,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,ZNF267,ZNF720"
TCGA.AG.3891.01A	16	31519054	46633711	19	-0.3304	NEUTRAL	NA	9	"AHSP,C16orf58,SHCBP1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,ZNF267,ZNF720"
TCGA.AA.3930.01A	16	31519054	88017619	2937	0.0899	NEUTRAL	NA	330	Too-Many
TCGA.AF.2692	16	31603771	88780022	16568	0	NEUTRAL	NA	337	Too-Many
TCGA.AG.3909.01A	16	31724654	46655117	22	0.0378	NEUTRAL	NA	7	"SHCBP1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,ZNF267,ZNF720"
TCGA.CM.5344	16	32482954	54355168	2410	0.2733	NEUTRAL	NA	40	"ABCC11,ABCC12,ADCY7,AKTIP,BRD7,C16orf78,C16orf87,C16orf97,CBLN1,CHD9,CNEP1R1,CYLD,DNAJA2,FTO,GPT2,HEATR3,IRX3,ITFG1,LOC643802,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,RBL2,RPGRIP1L,SALL1,SHCBP1,SIAH1,SNX20,TOX3,TP53TG3,TP53TG3B,TP53TG3C,VPS35,ZNF423"
TCGA.AF.3913	16	32482954	70842096	7134	0.2657	NEUTRAL	NA	216	Too-Many
TCGA.G4.6299	16	32482954	90163274	16756	-0.0779	NEUTRAL	NA	368	Too-Many
TCGA.AZ.6608	16	33550090	35090199	91	0.1384	NEUTRAL	NA	0	None
TCGA.AA.3952	16	33550090	90163274	16753	-0.0053	NEUTRAL	NA	365	Too-Many
TCGA.G4.6303	16	33550090	90163274	16763	-0.0344	NEUTRAL	NA	365	Too-Many
TCGA.DM.A1D6	16	34197817	70901175	7180	0.0035	NEUTRAL	NA	213	Too-Many
TCGA.CI.6622	16	34197817	90163274	16735	-0.0133	NEUTRAL	NA	365	Too-Many
TCGA.AA.3870	16	34202672	34471297	37	-0.1925	NEUTRAL	NA	0	None
TCGA.F5.6465	16	34202672	35139484	94	-0.2162	NEUTRAL	NA	0	None
TCGA.AY.5543	16	34202672	78916838	10449	-0.0225	NEUTRAL	NA	265	Too-Many
TCGA.AF.6672	16	34202672	81946713	12559	-0.4069	NEUTRAL	NA	278	Too-Many
TCGA.EI.6508	16	34379277	34739570	43	-0.3691	NEUTRAL	NA	0	None
TCGA.AG.A01Y	16	34410954	35112051	64	-0.3588	NEUTRAL	NA	0	None
TCGA.AA.3867	16	34424308	34790433	39	-0.3105	NEUTRAL	NA	0	None
TCGA.AA.3979	16	34424308	34790433	39	-0.4375	NEUTRAL	NA	0	None
TCGA.AA.3955	16	34424308	34814486	45	-0.0459	NEUTRAL	NA	0	None
TCGA.D5.6927	16	34441794	34733875	30	-0.3681	NEUTRAL	NA	0	None
TCGA.AA.3989	16	34441794	46650889	71	-0.265	NEUTRAL	NA	1	SHCBP1
TCGA.AA.3875	16	34470703	34739570	30	-0.4318	NEUTRAL	NA	0	None
TCGA.F5.6571	16	34470703	34757070	31	0.3494	NEUTRAL	NA	0	None
TCGA.AA.3848	16	34470703	34796530	36	-0.3998	NEUTRAL	NA	0	None
TCGA.D5.6930	16	34470703	34796530	36	-0.3195	NEUTRAL	NA	0	None
TCGA.AA.3975	16	34470703	34822370	41	-0.4872	NEUTRAL	NA	0	None
TCGA.AA.3841	16	34471297	34803388	37	-0.2268	NEUTRAL	NA	0	None
TCGA.AA.3679	16	34471297	34814486	39	0.0168	NEUTRAL	NA	0	None
TCGA.AA.3976	16	34479680	34760966	30	-0.2457	NEUTRAL	NA	0	None
TCGA.AA.3866	16	34479680	34790433	32	-0.3665	NEUTRAL	NA	0	None
TCGA.AA.3982	16	34479680	46534976	58	-0.2555	NEUTRAL	NA	0	None
TCGA.EI.6513	16	34592034	34822370	34	-0.3898	NEUTRAL	NA	0	None
TCGA.D5.6927	16	34739570	78588531	10167	-0.0044	NEUTRAL	NA	265	Too-Many
TCGA.EI.6508	16	34757070	53739772	2077	-0.035	NEUTRAL	NA	36	"ABCC11,ABCC12,ADCY7,AKTIP,BRD7,C16orf78,C16orf87,C16orf97,CBLN1,CHD9,CNEP1R1,CYLD,DNAJA2,FTO,GPT2,HEATR3,ITFG1,LOC643802,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,RBL2,RPGRIP1L,SALL1,SHCBP1,SIAH1,SNX20,TOX3,VPS35,ZNF423"
TCGA.AA.3875	16	34757070	70869420	7099	0.0136	NEUTRAL	NA	213	Too-Many
TCGA.AA.3972	16	34760966	52939463	1882	0.002	NEUTRAL	NA	30	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,C16orf87,C16orf97,CBLN1,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,SALL1,SHCBP1,SIAH1,SNX20,TOX3,VPS35,ZNF423"
TCGA.AA.3870	16	34760966	70842096	7088	-0.0089	NEUTRAL	NA	213	Too-Many
TCGA.F5.6571	16	34760966	90163274	16675	0.0002	NEUTRAL	NA	365	Too-Many
TCGA.AA.3976	16	34790370	70854380	7089	0.2994	NEUTRAL	NA	213	Too-Many
TCGA.AA.3867	16	34791790	51748948	1386	0.2684	NEUTRAL	NA	28	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,C16orf87,CBLN1,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,SALL1,SHCBP1,SIAH1,SNX20,VPS35,ZNF423"
TCGA.AA.3979	16	34791790	57706582	3610	0.0095	NEUTRAL	NA	82	"ABCC11,ABCC12,ADCY7,ADGRG1,ADGRG3,ADGRG5,AKTIP,AMFR,ARL2BP,BBS2,BRD7,C16orf78,C16orf87,C16orf97,CAPNS2,CBLN1,CCDC102A,CCL17,CCL22,CES1,CES5A,CETP,CHD9,CIAPIN1,CNEP1R1,COQ9,CPNE2,CX3CL1,CYLD,DNAJA2,DOK4,FAM192A,FTO,GNAO1,GPT2,HEATR3,HERPUD1,IRX3,IRX5,IRX6,ITFG1,LOC643802,LONP2,LPCAT2,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,MYLK3,N4BP1,NETO2,NKD1,NLRC5,NOD2,NUDT21,NUP93,OGFOD1,ORC6,PAPD5,PHKB,PLLP,POLR2C,RBL2,RPGRIP1L,RSPRY1,SALL1,SHCBP1,SIAH1,SLC12A3,SLC6A2,SNX20,TOX3,VPS35,ZNF423"
TCGA.AA.3866	16	34791790	65924368	6177	0.185	NEUTRAL	NA	104	Too-Many
TCGA.AA.3848	16	34796741	51748948	1384	0.0149	NEUTRAL	NA	28	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,C16orf87,CBLN1,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,SALL1,SHCBP1,SIAH1,SNX20,VPS35,ZNF423"
TCGA.D5.6930	16	34796741	70855632	7079	-0.0049	NEUTRAL	NA	213	Too-Many
TCGA.AA.3841	16	34813360	75252305	8409	0.1552	NEUTRAL	NA	246	Too-Many
TCGA.AA.3955	16	34822370	90163274	16674	0.3728	NEUTRAL	NA	365	Too-Many
TCGA.EI.6513	16	34850920	70874791	7089	-0.0179	NEUTRAL	NA	213	Too-Many
TCGA.AA.3975	16	34850920	90163274	16665	-1.00E-04	NEUTRAL	NA	365	Too-Many
TCGA.DM.A1D8	16	35112051	48560940	238	0.2772	NEUTRAL	NA	14	"ABCC11,ABCC12,C16orf87,DNAJA2,GPT2,ITFG1,LONP2,MYLK3,NETO2,ORC6,PHKB,SHCBP1,SIAH1,VPS35"
TCGA.AG.A01Y	16	35112616	81571978	12276	-0.0302	NEUTRAL	NA	277	Too-Many
TCGA.AG.3726	16	35205716	46583024	6	0.1087	NEUTRAL	NA	0	None
TCGA.F5.6465	16	35205716	58471218	3833	0.3268	NEUTRAL	NA	96	"ABCC11,ABCC12,ADCY7,ADGRG1,ADGRG3,ADGRG5,AKTIP,AMFR,ARL2BP,BBS2,BRD7,C16orf78,C16orf87,C16orf97,CAPNS2,CBLN1,CCDC102A,CCDC113,CCL17,CCL22,CES1,CES5A,CETP,CFAP20,CHD9,CIAPIN1,CNEP1R1,CNGB1,COQ9,CPNE2,CSNK2A2,CX3CL1,CYLD,DNAJA2,DOK4,DRC7,FAM192A,FTO,GINS3,GNAO1,GPT2,HEATR3,HERPUD1,IRX3,IRX5,IRX6,ITFG1,KATNB1,KIFC3,LOC388282,LOC643802,LONP2,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,MYLK3,N4BP1,NETO2,NKD1,NLRC5,NOD2,NUDT21,NUP93,OGFOD1,ORC6,PAPD5,PHKB,PLLP,POLR2C,PRSS54,RBL2,RPGRIP1L,RSPRY1,SALL1,SHCBP1,SIAH1,SLC12A3,SLC6A2,SNX20,TEPP,TOX3,USB1,VPS35,ZNF319,ZNF423"
TCGA.F5.6811.01A	16	45173115	60448474	1068	-0.0261	NEUTRAL	NA	102	Too-Many
TCGA.AG.A01W.01A	16	45199666	45422454	53	-0.0089	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	45489005	45555998	13	-0.4059	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	45558896	46287752	58	0.2215	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	46289821	46796778	44	-0.1809	NEUTRAL	NA	4	"MYLK3,ORC6,SHCBP1,VPS35"
TCGA.F4.6461	16	46534976	67628478	6555	-0.0149	NEUTRAL	NA	149	Too-Many
TCGA.A6.2671	16	46534976	90163274	16640	-0.451	NEUTRAL	NA	365	Too-Many
TCGA.AA.3982	16	46539391	51753957	1360	0.3514	NEUTRAL	NA	28	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,C16orf87,CBLN1,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,SALL1,SHCBP1,SIAH1,SNX20,VPS35,ZNF423"
TCGA.AG.3891.01A	16	46637413	49672151	211	0.0324	NEUTRAL	NA	18	"ABCC11,ABCC12,C16orf78,C16orf87,CBLN1,DNAJA2,GPT2,ITFG1,LONP2,MYLK3,N4BP1,NETO2,ORC6,PHKB,SHCBP1,SIAH1,VPS35,ZNF423"
TCGA.AA.3989	16	46651785	48902466	305	0.1093	NEUTRAL	NA	15	"ABCC11,ABCC12,C16orf87,DNAJA2,GPT2,ITFG1,LONP2,MYLK3,N4BP1,NETO2,ORC6,PHKB,SHCBP1,SIAH1,VPS35"
TCGA.AG.3906.01A	16	46695578	46940707	40	0.2194	NEUTRAL	NA	5	"C16orf87,GPT2,MYLK3,ORC6,VPS35"
TCGA.AA.3509.01A	16	46717368	53691348	392	-0.0498	NEUTRAL	NA	34	"ABCC11,ABCC12,ADCY7,AKTIP,BRD7,C16orf78,C16orf87,C16orf97,CBLN1,CHD9,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LOC643802,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,RBL2,RPGRIP1L,SALL1,SIAH1,SNX20,TOX3,VPS35,ZNF423"
TCGA.AA.3861.01A	16	46723560	56602701	550	-0.0411	NEUTRAL	NA	49	"ABCC11,ABCC12,ADCY7,AKTIP,AMFR,BBS2,BRD7,C16orf78,C16orf87,C16orf97,CAPNS2,CBLN1,CES1,CES5A,CHD9,CNEP1R1,CYLD,DNAJA2,FTO,GNAO1,GPT2,HEATR3,IRX3,IRX5,IRX6,ITFG1,LOC643802,LONP2,LPCAT2,MMP2,MT4,MYLK3,N4BP1,NETO2,NKD1,NOD2,NUDT21,OGFOD1,ORC6,PAPD5,PHKB,RBL2,RPGRIP1L,SALL1,SIAH1,SLC6A2,SNX20,TOX3,ZNF423"
TCGA.CK.5914.01A	16	46741545	46992875	30	0.366	NEUTRAL	NA	4	"C16orf87,DNAJA2,GPT2,MYLK3"
TCGA.A6.3808.01A	16	46741545	56436850	501	0.1527	NEUTRAL	NA	44	"ABCC11,ABCC12,ADCY7,AKTIP,AMFR,BRD7,C16orf78,C16orf87,C16orf97,CAPNS2,CBLN1,CES1,CES5A,CHD9,CNEP1R1,CYLD,DNAJA2,FTO,GNAO1,GPT2,HEATR3,IRX3,IRX5,IRX6,ITFG1,LOC643802,LONP2,LPCAT2,MMP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,PAPD5,PHKB,RBL2,RPGRIP1L,SALL1,SIAH1,SLC6A2,SNX20,TOX3,ZNF423"
TCGA.AA.A00N.01A	16	46744502	47497781	61	-0.2752	NEUTRAL	NA	7	"C16orf87,DNAJA2,GPT2,ITFG1,MYLK3,NETO2,PHKB"
TCGA.AG.A00C.01A	16	46746541	48385475	155	0.0115	NEUTRAL	NA	10	"ABCC11,ABCC12,C16orf87,DNAJA2,GPT2,ITFG1,LONP2,MYLK3,NETO2,PHKB"
TCGA.AG.4009.01A	16	46754971	46962768	22	0.0469	NEUTRAL	NA	3	"C16orf87,GPT2,MYLK3"
TCGA.AA.A00D.01A	16	46761127	47156519	33	0.3683	NEUTRAL	NA	5	"C16orf87,DNAJA2,GPT2,MYLK3,NETO2"
TCGA.AG.A01W.01A	16	46799775	53921627	300	0.1151	NEUTRAL	NA	32	"ABCC11,ABCC12,ADCY7,AKTIP,BRD7,C16orf78,C16orf87,C16orf97,CBLN1,CHD9,CNEP1R1,CYLD,DNAJA2,FTO,GPT2,HEATR3,ITFG1,LOC643802,LONP2,N4BP1,NETO2,NKD1,NOD2,PAPD5,PHKB,RBL2,RPGRIP1L,SALL1,SIAH1,SNX20,TOX3,ZNF423"
TCGA.AA.A010.01A	16	46836822	46962768	15	-0.0309	NEUTRAL	NA	2	"C16orf87,GPT2"
TCGA.AA.A010.01A	16	47007343	47143345	4	0.1329	NEUTRAL	NA	2	"DNAJA2,NETO2"
TCGA.CK.5914.01A	16	47007343	48117578	59	0.1922	NEUTRAL	NA	5	"ABCC12,DNAJA2,ITFG1,NETO2,PHKB"
TCGA.G4.6626	16	47094849	90163274	16614	-0.0987	NEUTRAL	NA	358	Too-Many
TCGA.AG.3906.01A	16	47117084	47156519	4	-0.1294	NEUTRAL	NA	1	NETO2
TCGA.AA.A010.01A	16	47252739	48130620	53	0.2542	NEUTRAL	NA	3	"ABCC12,ITFG1,PHKB"
TCGA.AG.4009.01A	16	47252739	50667082	212	-0.0428	NEUTRAL	NA	16	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,CBLN1,CNEP1R1,HEATR3,ITFG1,LONP2,N4BP1,NKD1,PAPD5,PHKB,SIAH1,ZNF423"
TCGA.AG.3906.01A	16	47252739	58327580	858	0.0511	NEUTRAL	NA	87	"ABCC11,ABCC12,ADCY7,ADGRG1,ADGRG3,ADGRG5,AKTIP,AMFR,ARL2BP,BBS2,BRD7,C16orf78,C16orf97,CAPNS2,CBLN1,CCDC102A,CCDC113,CCL17,CCL22,CES1,CES5A,CETP,CFAP20,CHD9,CIAPIN1,CNEP1R1,CNGB1,COQ9,CPNE2,CSNK2A2,CX3CL1,CYLD,DOK4,DRC7,FAM192A,FTO,GNAO1,HEATR3,HERPUD1,IRX3,IRX5,IRX6,ITFG1,KATNB1,KIFC3,LOC388282,LOC643802,LONP2,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,N4BP1,NKD1,NLRC5,NOD2,NUDT21,NUP93,OGFOD1,PAPD5,PHKB,PLLP,POLR2C,PRSS54,RBL2,RPGRIP1L,RSPRY1,SALL1,SIAH1,SLC12A3,SLC6A2,SNX20,TEPP,TOX3,USB1,ZNF319,ZNF423"
TCGA.AG.3726	16	47646423	48085844	58	0.2562	NEUTRAL	NA	1	PHKB
TCGA.AA.A00D.01A	16	48120605	48278288	52	0.0977	NEUTRAL	NA	3	"ABCC11,ABCC12,LONP2"
TCGA.AA.A01Q.01A	16	48221171	48381370	32	0.3262	NEUTRAL	NA	2	"ABCC11,LONP2"
TCGA.CK.5914.01A	16	48248751	48381960	22	0.3012	NEUTRAL	NA	2	"ABCC11,LONP2"
TCGA.AA.A00N.01A	16	48249076	48381960	21	-0.0368	NEUTRAL	NA	2	"ABCC11,LONP2"
TCGA.AG.3909.01A	16	48265687	48296640	7	0.1291	NEUTRAL	NA	2	"ABCC11,LONP2"
TCGA.AA.A010.01A	16	48292482	48381370	10	0.2653	NEUTRAL	NA	1	LONP2
TCGA.AA.A01Q.01A	16	48381960	48399256	6	-0.2148	NEUTRAL	NA	2	"LONP2,SIAH1"
TCGA.AG.3909.01A	16	48395524	48399256	4	-0.4875	NEUTRAL	NA	1	SIAH1
TCGA.AA.A00D.01A	16	48396914	49823331	19	0.2893	NEUTRAL	NA	5	"C16orf78,CBLN1,N4BP1,SIAH1,ZNF423"
TCGA.5M.AATA	16	48523442	90163274	16424	-0.4715	NEUTRAL	NA	351	Too-Many
TCGA.DM.A1D8	16	48571589	70873764	6827	-0.016	NEUTRAL	NA	199	Too-Many
TCGA.AG.A00C.01A	16	48576766	49313268	7	0.1278	NEUTRAL	NA	2	"CBLN1,N4BP1"
TCGA.AG.3909.01A	16	48576766	49314786	8	0.2483	NEUTRAL	NA	2	"CBLN1,N4BP1"
TCGA.CK.5914.01A	16	48576766	49314786	8	0.2185	NEUTRAL	NA	2	"CBLN1,N4BP1"
TCGA.AA.A01Q.01A	16	48576766	49432995	9	0.3244	NEUTRAL	NA	3	"C16orf78,CBLN1,N4BP1"
TCGA.AA.A00N.01A	16	48576766	49823331	23	-0.0479	NEUTRAL	NA	4	"C16orf78,CBLN1,N4BP1,ZNF423"
TCGA.AG.3726	16	48671273	51938564	1191	0.2689	NEUTRAL	NA	13	"ADCY7,BRD7,C16orf78,CBLN1,CNEP1R1,CYLD,HEATR3,NKD1,NOD2,PAPD5,SALL1,SNX20,ZNF423"
TCGA.AA.3989	16	48907299	90163274	16340	0.0549	NEUTRAL	NA	350	Too-Many
TCGA.AA.3812	16	49296609	90163274	16183	-0.0052	NEUTRAL	NA	350	Too-Many
TCGA.AG.A00C.01A	16	49314786	49660037	10	-0.2045	NEUTRAL	NA	3	"C16orf78,CBLN1,ZNF423"
TCGA.AA.A010.01A	16	49407813	50136121	33	0.2757	NEUTRAL	NA	4	"C16orf78,CNEP1R1,HEATR3,ZNF423"
TCGA.AG.3909.01A	16	49525100	50112612	22	-0.1968	NEUTRAL	NA	3	"CNEP1R1,HEATR3,ZNF423"
TCGA.CK.5914.01A	16	49525100	50134092	27	-0.1548	NEUTRAL	NA	3	"CNEP1R1,HEATR3,ZNF423"
TCGA.AA.A01Q.01A	16	49669524	50138833	19	-0.1369	NEUTRAL	NA	3	"CNEP1R1,HEATR3,ZNF423"
TCGA.AG.A00C.01A	16	49669524	50138833	24	0.3679	NEUTRAL	NA	3	"CNEP1R1,HEATR3,ZNF423"
TCGA.AG.3891.01A	16	49764632	50138833	22	0.3509	NEUTRAL	NA	3	"CNEP1R1,HEATR3,ZNF423"
TCGA.AG.3909.01A	16	50117837	50118420	2	0.3572	NEUTRAL	NA	1	HEATR3
TCGA.AA.A00N.01A	16	50117837	50263031	16	-0.3684	NEUTRAL	NA	2	"HEATR3,PAPD5"
TCGA.AG.A00C.01A	16	50245216	50642138	47	-0.0243	NEUTRAL	NA	4	"ADCY7,BRD7,NKD1,PAPD5"
TCGA.AG.3891.01A	16	50245216	57550188	549	0.0366	NEUTRAL	NA	59	"ADCY7,AKTIP,AMFR,ARL2BP,BBS2,BRD7,C16orf97,CAPNS2,CCDC102A,CCL17,CCL22,CES1,CES5A,CETP,CHD9,CIAPIN1,COQ9,CPNE2,CX3CL1,CYLD,DOK4,FAM192A,FTO,GNAO1,HERPUD1,IRX3,IRX5,IRX6,LOC643802,LPCAT2,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NKD1,NLRC5,NOD2,NUDT21,NUP93,OGFOD1,PAPD5,PLLP,POLR2C,RBL2,RPGRIP1L,RSPRY1,SALL1,SLC12A3,SLC6A2,SNX20,TOX3"
TCGA.AG.3909.01A	16	50263031	50664691	46	0.3516	NEUTRAL	NA	4	"ADCY7,BRD7,NKD1,PAPD5"
TCGA.AA.A00D.01A	16	50322051	50345564	17	0.0055	NEUTRAL	NA	1	ADCY7
TCGA.AA.A00Q.01A	16	50322051	50348161	23	0.0925	NEUTRAL	NA	1	ADCY7
TCGA.AA.A01Q.01A	16	50334966	50583282	35	0.0137	NEUTRAL	NA	3	"ADCY7,BRD7,NKD1"
TCGA.AA.A00N.01A	16	50345564	50810039	55	-0.4557	NEUTRAL	NA	6	"ADCY7,BRD7,CYLD,NKD1,NOD2,SNX20"
TCGA.AA.A00Q.01A	16	50402585	50756483	20	0.1642	NEUTRAL	NA	4	"BRD7,NKD1,NOD2,SNX20"
TCGA.AA.A01Q.01A	16	50642138	51185038	28	-0.4248	NEUTRAL	NA	5	"CYLD,NKD1,NOD2,SALL1,SNX20"
TCGA.AG.A00C.01A	16	50655483	50667082	6	-0.424	NEUTRAL	NA	1	NKD1
TCGA.CK.5914.01A	16	50655483	50788183	27	8.00E-04	NEUTRAL	NA	4	"CYLD,NKD1,NOD2,SNX20"
TCGA.G4.6310	16	50661272	70894888	6166	0.2272	NEUTRAL	NA	190	Too-Many
TCGA.AG.3909.01A	16	50666145	50788183	20	-0.4884	NEUTRAL	NA	4	"CYLD,NKD1,NOD2,SNX20"
TCGA.AG.A00C.01A	16	50707300	56443288	232	0.0376	NEUTRAL	NA	23	"AKTIP,AMFR,C16orf97,CAPNS2,CES1,CES5A,CHD9,CYLD,FTO,GNAO1,IRX3,IRX5,IRX6,LOC643802,LPCAT2,MMP2,NOD2,RBL2,RPGRIP1L,SALL1,SLC6A2,SNX20,TOX3"
TCGA.AG.3611.01A	16	50765596	52484138	8	-0.0436	NEUTRAL	NA	5	"C16orf97,CYLD,NOD2,SALL1,TOX3"
TCGA.AG.4009.01A	16	50811684	50830206	12	-0.1541	NEUTRAL	NA	1	CYLD
TCGA.AA.A010.01A	16	50821656	50830206	6	0.2099	NEUTRAL	NA	1	CYLD
TCGA.AA.3967.01A	16	50830206	53348252	44	-0.298	NEUTRAL	NA	5	"C16orf97,CHD9,CYLD,SALL1,TOX3"
TCGA.AA.3864	16	50841794	59921261	3295	0.0789	NEUTRAL	NA	74	"ADGRG1,ADGRG3,ADGRG5,AKTIP,AMFR,ARL2BP,BBS2,C16orf97,CAPNS2,CCDC102A,CCDC113,CCL17,CCL22,CES1,CES5A,CETP,CFAP20,CHD9,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,FTO,GINS3,GNAO1,GOT2,HERPUD1,IRX3,IRX5,IRX6,KATNB1,KIFC3,LOC388282,LOC643802,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,PRSS54,RBL2,RPGRIP1L,RSPRY1,SALL1,SETD6,SLC12A3,SLC38A7,SLC6A2,TEPP,TOX3,USB1,ZNF319"
TCGA.F5.6813	16	50903328	90163274	15654	0.3321	NEUTRAL	NA	338	Too-Many
TCGA.T9.A92H	16	51021558	52352111	560	0.2114	NEUTRAL	NA	2	"C16orf97,SALL1"
TCGA.CK.5914.01A	16	51170995	51185038	4	-0.2593	NEUTRAL	NA	1	SALL1
TCGA.A6.2678	16	51535062	51900479	167	0.0146	NEUTRAL	NA	0	None
TCGA.AA.3941	16	51698585	52865644	484	0.1235	NEUTRAL	NA	2	"C16orf97,TOX3"
TCGA.AA.3848	16	51752050	51773228	14	-0.5093	NEUTRAL	NA	0	None
TCGA.AA.3867	16	51752050	51783550	20	-0.3286	NEUTRAL	NA	0	None
TCGA.AA.3848	16	51774110	82687369	11660	0.001	NEUTRAL	NA	254	Too-Many
TCGA.AA.3982	16	51774309	52653338	368	0.0015	NEUTRAL	NA	2	"C16orf97,TOX3"
TCGA.AA.3956	16	51774309	70927077	5715	0.1719	NEUTRAL	NA	185	Too-Many
TCGA.AA.3867	16	51783980	59445686	2720	0.2478	NEUTRAL	NA	73	"ADGRG1,ADGRG3,ADGRG5,AKTIP,AMFR,ARL2BP,BBS2,C16orf97,CAPNS2,CCDC102A,CCDC113,CCL17,CCL22,CES1,CES5A,CETP,CFAP20,CHD9,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,FTO,GINS3,GNAO1,GOT2,HERPUD1,IRX3,IRX5,IRX6,KATNB1,KIFC3,LOC388282,LOC643802,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,PRSS54,RBL2,RPGRIP1L,RSPRY1,SETD6,SLC12A3,SLC38A7,SLC6A2,TEPP,TOX3,USB1,ZNF319"
TCGA.AG.A026	16	51820822	66920451	5099	-0.0034	NEUTRAL	NA	90	"ADGRG1,ADGRG3,ADGRG5,AKTIP,AMFR,ARL2BP,BBS2,BEAN1,C16orf97,CA7,CAPNS2,CCDC102A,CCDC113,CCDC79,CCL17,CCL22,CDH11,CDH5,CDH8,CES1,CES5A,CETP,CFAP20,CHD9,CIAPIN1,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,DYNC1LI2,FAM192A,FTO,GINS3,GNAO1,GOT2,HERPUD1,IRX3,IRX5,IRX6,KATNB1,KIFC3,LOC388282,LOC643802,LOC729159,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NAE1,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PDP2,PLLP,POLR2C,PRSS54,RBL2,RPGRIP1L,RSPRY1,SETD6,SLC12A3,SLC38A7,SLC6A2,TEPP,TK2,TOX3,USB1,ZNF319"
TCGA.D5.6535	16	52009072	59571672	2667	0.2692	NEUTRAL	NA	73	"ADGRG1,ADGRG3,ADGRG5,AKTIP,AMFR,ARL2BP,BBS2,C16orf97,CAPNS2,CCDC102A,CCDC113,CCL17,CCL22,CES1,CES5A,CETP,CFAP20,CHD9,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,FTO,GINS3,GNAO1,GOT2,HERPUD1,IRX3,IRX5,IRX6,KATNB1,KIFC3,LOC388282,LOC643802,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,PRSS54,RBL2,RPGRIP1L,RSPRY1,SETD6,SLC12A3,SLC38A7,SLC6A2,TEPP,TOX3,USB1,ZNF319"
TCGA.D5.6539	16	52187964	90163274	15098	-0.0359	NEUTRAL	NA	336	Too-Many
TCGA.AA.A010.01A	16	52473095	53504267	59	0.0986	NEUTRAL	NA	4	"CHD9,LOC643802,RBL2,TOX3"
TCGA.AG.4009.01A	16	52473095	53524068	62	-0.2121	NEUTRAL	NA	4	"CHD9,LOC643802,RBL2,TOX3"
TCGA.AA.A01Q.01A	16	52473095	56309791	140	0.0941	NEUTRAL	NA	17	"AKTIP,CAPNS2,CES1,CES5A,CHD9,FTO,GNAO1,IRX3,IRX5,IRX6,LOC643802,LPCAT2,MMP2,RBL2,RPGRIP1L,SLC6A2,TOX3"
TCGA.AG.3611.01A	16	52497799	54966363	64	0.2738	NEUTRAL	NA	9	"AKTIP,CHD9,FTO,IRX3,IRX5,LOC643802,RBL2,RPGRIP1L,TOX3"
TCGA.AA.3850	16	52636364	58885422	2202	0.19645	NEUTRAL	NA	71	"ADGRG1,ADGRG3,ADGRG5,AKTIP,AMFR,ARL2BP,BBS2,CAPNS2,CCDC102A,CCDC113,CCL17,CCL22,CES1,CES5A,CETP,CFAP20,CHD9,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,FTO,GINS3,GNAO1,GOT2,HERPUD1,IRX3,IRX5,IRX6,KATNB1,KIFC3,LOC388282,LOC643802,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,PRSS54,RBL2,RPGRIP1L,RSPRY1,SETD6,SLC12A3,SLC38A7,SLC6A2,TEPP,USB1,ZNF319"
TCGA.AH.6644	16	52641959	90163274	14887	-0.3106	NEUTRAL	NA	335	Too-Many
TCGA.AA.3982	16	52653784	53800953	325	0.29	NEUTRAL	NA	6	"AKTIP,CHD9,FTO,LOC643802,RBL2,RPGRIP1L"
TCGA.EI.6883	16	52924099	56765225	1461	-0.0111	NEUTRAL	NA	32	"AKTIP,AMFR,BBS2,CAPNS2,CES1,CES5A,CHD9,FTO,GNAO1,IRX3,IRX5,IRX6,LOC643802,LPCAT2,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NUDT21,NUP93,OGFOD1,RBL2,RPGRIP1L,SLC6A2"
TCGA.AA.3972	16	52943698	53068467	64	-0.3232	NEUTRAL	NA	0	None
TCGA.A6.6142	16	53007139	90163274	14775	-0.0224	NEUTRAL	NA	335	Too-Many
TCGA.CA.5254	16	53031634	70900110	5175	0.2837	NEUTRAL	NA	183	Too-Many
TCGA.AA.3972	16	53070035	90163274	14740	0	NEUTRAL	NA	335	Too-Many
TCGA.AA.3967.01A	16	53348696	84472752	2239	0.1681	NEUTRAL	NA	265	Too-Many
TCGA.AG.3725	16	53362785	90163274	14684	-0.5134	NEUTRAL	NA	334	Too-Many
TCGA.CK.5914.01A	16	53472911	55539204	83	0.3413	NEUTRAL	NA	8	"AKTIP,FTO,IRX3,IRX5,IRX6,MMP2,RBL2,RPGRIP1L"
TCGA.AG.3909.01A	16	53472911	55579607	90	0.2215	NEUTRAL	NA	9	"AKTIP,FTO,IRX3,IRX5,IRX6,LPCAT2,MMP2,RBL2,RPGRIP1L"
TCGA.AA.A00N.01A	16	53485568	53504267	11	-0.0374	NEUTRAL	NA	1	RBL2
TCGA.AA.A010.01A	16	53513000	53730011	33	-0.4997	NEUTRAL	NA	3	"AKTIP,RBL2,RPGRIP1L"
TCGA.AA.3862.01A	16	53639343	58200487	536	-0.2355	NEUTRAL	NA	59	"ADGRG1,ADGRG3,ADGRG5,AMFR,ARL2BP,BBS2,CAPNS2,CCDC102A,CCL17,CCL22,CES1,CES5A,CETP,CFAP20,CIAPIN1,CNGB1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,FTO,GNAO1,HERPUD1,IRX3,IRX5,IRX6,KATNB1,KIFC3,LOC388282,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,RPGRIP1L,RSPRY1,SLC12A3,SLC6A2,TEPP,USB1,ZNF319"
TCGA.AA.A00N.01A	16	53679540	53708899	11	0.1305	NEUTRAL	NA	1	RPGRIP1L
TCGA.T9.A92H	16	53683584	56377747	1169	0.2203	NEUTRAL	NA	12	"CAPNS2,CES1,CES5A,FTO,GNAO1,IRX3,IRX5,IRX6,LPCAT2,MMP2,RPGRIP1L,SLC6A2"
TCGA.AA.3509.01A	16	53725929	55539204	39	-0.1374	NEUTRAL	NA	6	"FTO,IRX3,IRX5,IRX6,MMP2,RPGRIP1L"
TCGA.AA.A010.01A	16	53734503	54145644	10	0.0884	NEUTRAL	NA	2	"FTO,RPGRIP1L"
TCGA.AA.3982	16	53809246	54520725	335	0.3307	NEUTRAL	NA	2	"FTO,IRX3"
TCGA.AG.A01W.01A	16	54070845	54096716	14	-0.3888	NEUTRAL	NA	1	FTO
TCGA.EI.6508	16	54095864	72146665	5189	-0.0303	NEUTRAL	NA	196	Too-Many
TCGA.AG.A01W.01A	16	54276510	54402285	13	-0.3049	NEUTRAL	NA	1	IRX3
TCGA.QL.A97D	16	54279402	81538841	9984	0.1501	NEUTRAL	NA	241	Too-Many
TCGA.AA.A00L.01A	16	54318090	55527022	20	-0.1733	NEUTRAL	NA	4	"IRX3,IRX5,IRX6,MMP2"
TCGA.AA.A00Q.01A	16	54318522	55362600	9	0.0442	NEUTRAL	NA	3	"IRX3,IRX5,IRX6"
TCGA.CM.5344	16	54355417	70854380	4751	-0.2209	NEUTRAL	NA	176	Too-Many
TCGA.AG.A01W.01A	16	54412740	54466498	17	-0.2495	NEUTRAL	NA	0	None
TCGA.AA.A01S	16	54424970	90163274	14302	-0.00955	NEUTRAL	NA	328	Too-Many
TCGA.D5.5538	16	54424970	90163274	14300	-0.0169	NEUTRAL	NA	328	Too-Many
TCGA.AA.3982	16	54520780	54524224	6	-0.4388	NEUTRAL	NA	0	None
TCGA.AA.3982	16	54537607	55536762	480	0.3403	NEUTRAL	NA	3	"IRX5,IRX6,MMP2"
TCGA.AG.A01W.01A	16	54783599	55005620	22	0.2276	NEUTRAL	NA	1	IRX5
TCGA.AG.3611.01A	16	54966952	55536641	19	-0.1849	NEUTRAL	NA	3	"IRX5,IRX6,MMP2"
TCGA.AF.3914.01A	16	54966952	56435603	90	-0.0318	NEUTRAL	NA	10	"AMFR,CAPNS2,CES1,CES5A,GNAO1,IRX5,IRX6,LPCAT2,MMP2,SLC6A2"
TCGA.AG.A01W.01A	16	55024050	55067409	20	-0.2747	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	55076135	55429014	65	0.2087	NEUTRAL	NA	1	IRX6
TCGA.A6.6137	16	55231739	90163274	13971	-0.0103	NEUTRAL	NA	327	Too-Many
TCGA.AA.A010.01A	16	55358926	56423085	89	-0.0325	NEUTRAL	NA	9	"AMFR,CAPNS2,CES1,CES5A,GNAO1,IRX6,LPCAT2,MMP2,SLC6A2"
TCGA.AG.A01W.01A	16	55430347	55504629	31	-0.3475	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	55526588	55554407	8	0.03	NEUTRAL	NA	2	"LPCAT2,MMP2"
TCGA.AG.4009.01A	16	55527022	55725783	25	-0.1848	NEUTRAL	NA	4	"CAPNS2,LPCAT2,MMP2,SLC6A2"
TCGA.AA.A00L.01A	16	55530806	55837379	34	0.2604	NEUTRAL	NA	5	"CAPNS2,CES1,LPCAT2,MMP2,SLC6A2"
TCGA.AG.3611.01A	16	55539204	56914003	168	0.1507	NEUTRAL	NA	24	"AMFR,BBS2,CAPNS2,CES1,CES5A,GNAO1,LPCAT2,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NUDT21,NUP93,OGFOD1,SLC12A3,SLC6A2"
TCGA.AA.3982	16	55548321	55659337	38	-0.1589	NEUTRAL	NA	2	"CAPNS2,LPCAT2"
TCGA.AG.A01W.01A	16	55566439	55661221	40	-0.468	NEUTRAL	NA	2	"CAPNS2,LPCAT2"
TCGA.AA.3509.01A	16	55571419	61689327	588	-0.029	NEUTRAL	NA	63	"ADGRG1,ADGRG3,ADGRG5,AMFR,ARL2BP,BBS2,CAPNS2,CCDC102A,CCDC113,CCL17,CCL22,CDH8,CES1,CES5A,CETP,CFAP20,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,GINS3,GNAO1,GOT2,HERPUD1,KATNB1,KIFC3,LOC388282,LOC729159,LPCAT2,MMP15,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,PRSS54,RSPRY1,SETD6,SLC12A3,SLC38A7,SLC6A2,TEPP,USB1,ZNF319"
TCGA.AA.3982	16	55659457	56339225	259	0.2641	NEUTRAL	NA	4	"CES1,CES5A,GNAO1,SLC6A2"
TCGA.AG.A01W.01A	16	55672485	55710922	9	-0.1966	NEUTRAL	NA	1	SLC6A2
TCGA.AA.A00Q.01A	16	55690570	55734032	12	0.1792	NEUTRAL	NA	1	SLC6A2
TCGA.AA.A00D.01A	16	55703447	55837379	15	-0.1988	NEUTRAL	NA	2	"CES1,SLC6A2"
TCGA.AG.4009.01A	16	55727874	55897208	27	0.1872	NEUTRAL	NA	3	"CES1,CES5A,SLC6A2"
TCGA.AG.A01W.01A	16	55745652	56044178	48	-0.0908	NEUTRAL	NA	2	"CES1,CES5A"
TCGA.A6.5660	16	55795213	90163274	13610	-0.2956	NEUTRAL	NA	322	Too-Many
TCGA.AA.A00N.01A	16	55844382	55853432	5	-0.1909	NEUTRAL	NA	1	CES1
TCGA.AA.A00D.01A	16	55844382	56435603	39	0.2842	NEUTRAL	NA	4	"AMFR,CES1,CES5A,GNAO1"
TCGA.G4.6314	16	55883760	90163274	13636	0.0008	NEUTRAL	NA	321	Too-Many
TCGA.AG.4009.01A	16	55899843	56226408	6	-0.2559	NEUTRAL	NA	2	"CES5A,GNAO1"
TCGA.AA.3558	16	55907227	66061439	3183	0.0685	NEUTRAL	NA	60	"ADGRG1,ADGRG3,ADGRG5,AMFR,ARL2BP,BBS2,CCDC102A,CCDC113,CCL17,CCL22,CDH11,CDH8,CES5A,CETP,CFAP20,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,GINS3,GNAO1,GOT2,HERPUD1,KATNB1,KIFC3,LOC388282,LOC729159,MMP15,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,PRSS54,RSPRY1,SETD6,SLC12A3,SLC38A7,TEPP,USB1,ZNF319"
TCGA.AG.A01W.01A	16	56166191	56335760	43	-0.175	NEUTRAL	NA	1	GNAO1
TCGA.AG.3909.01A	16	56226109	56370596	6	0.3181	NEUTRAL	NA	1	GNAO1
TCGA.CK.5914.01A	16	56226109	56388740	10	-0.0864	NEUTRAL	NA	1	GNAO1
TCGA.AA.A00N.01A	16	56226109	56623713	64	-0.1649	NEUTRAL	NA	7	"AMFR,BBS2,GNAO1,MT3,MT4,NUDT21,OGFOD1"
TCGA.AG.4009.01A	16	56309791	56423085	14	0.3519	NEUTRAL	NA	2	"AMFR,GNAO1"
TCGA.AG.A01W.01A	16	56353507	56569174	42	-0.3925	NEUTRAL	NA	5	"AMFR,BBS2,GNAO1,NUDT21,OGFOD1"
TCGA.AA.3494	16	56361556	90163274	13454	-0.4704	NEUTRAL	NA	320	Too-Many
TCGA.AA.A00Q.01A	16	56362511	56401301	10	0.1307	NEUTRAL	NA	2	"AMFR,GNAO1"
TCGA.AG.3909.01A	16	56396772	56481650	19	0.314	NEUTRAL	NA	2	"AMFR,NUDT21"
TCGA.AA.A01Q.01A	16	56396772	57068024	158	0.0403	NEUTRAL	NA	20	"AMFR,BBS2,CETP,HERPUD1,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NLRC5,NUDT21,NUP93,OGFOD1,SLC12A3"
TCGA.AA.A01I.01A	16	56441876	57689280	272	-0.1987	NEUTRAL	NA	35	"ADGRG1,ADGRG5,AMFR,ARL2BP,BBS2,CCDC102A,CCL17,CCL22,CETP,CIAPIN1,COQ9,CPNE2,CX3CL1,DOK4,FAM192A,HERPUD1,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,RSPRY1,SLC12A3"
TCGA.AF.3914.01A	16	56441876	58019742	378	0.0756	NEUTRAL	NA	42	"ADGRG1,ADGRG3,ADGRG5,AMFR,ARL2BP,BBS2,CCDC102A,CCL17,CCL22,CETP,CIAPIN1,CNGB1,COQ9,CPNE2,CX3CL1,DOK4,DRC7,FAM192A,HERPUD1,KATNB1,KIFC3,LOC388282,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,RSPRY1,SLC12A3,TEPP"
TCGA.CK.5914.01A	16	56443288	56496398	13	-0.2212	NEUTRAL	NA	3	"AMFR,NUDT21,OGFOD1"
TCGA.AA.A010.01A	16	56480472	56692929	56	0.2662	NEUTRAL	NA	11	"BBS2,MT1A,MT1B,MT1E,MT1F,MT1M,MT2A,MT3,MT4,NUDT21,OGFOD1"
TCGA.AG.4009.01A	16	56480472	56868019	78	-0.0306	NEUTRAL	NA	15	"BBS2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NUDT21,NUP93,OGFOD1"
TCGA.AG.A00C.01A	16	56481650	56531608	19	-0.1335	NEUTRAL	NA	3	"BBS2,NUDT21,OGFOD1"
TCGA.AG.A00C.01A	16	56532302	56717814	45	0.2019	NEUTRAL	NA	12	"BBS2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4"
TCGA.AA.A00D.01A	16	56553617	57181436	147	0.1773	NEUTRAL	NA	18	"BBS2,CETP,CPNE2,HERPUD1,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NLRC5,NUP93,SLC12A3"
TCGA.AA.A00Q.01A	16	56553617	57181436	157	0.2704	NEUTRAL	NA	18	"BBS2,CETP,CPNE2,HERPUD1,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NLRC5,NUP93,SLC12A3"
TCGA.AG.A01W.01A	16	56575649	64970693	172	0.0604	NEUTRAL	NA	53	"ADGRG1,ADGRG3,ADGRG5,ARL2BP,CCDC102A,CCDC113,CCL17,CCL22,CDH8,CETP,CFAP20,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,GINS3,GOT2,HERPUD1,KATNB1,KIFC3,LOC388282,LOC729159,MMP15,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUP93,PLLP,POLR2C,PRSS54,RSPRY1,SETD6,SLC12A3,SLC38A7,TEPP,USB1,ZNF319"
TCGA.AA.A00A.01A	16	56601595	56782129	24	-0.0101	NEUTRAL	NA	12	"MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NUP93"
TCGA.AA.A00L.01A	16	56602701	56792402	29	-0.0296	NEUTRAL	NA	12	"MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NUP93"
TCGA.AA.3861.01A	16	56623432	57465032	196	-0.4371	NEUTRAL	NA	24	"ARL2BP,CCL17,CCL22,CETP,CIAPIN1,CPNE2,CX3CL1,FAM192A,HERPUD1,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,NLRC5,NUP93,PLLP,RSPRY1,SLC12A3"
TCGA.CK.5914.01A	16	56623713	56782129	30	0.1248	NEUTRAL	NA	11	"MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,NUP93"
TCGA.AA.A00N.01A	16	56782129	56792402	2	-0.2433	NEUTRAL	NA	1	NUP93
TCGA.AG.A00C.01A	16	56782129	57200976	124	-0.1363	NEUTRAL	NA	7	"CETP,CPNE2,FAM192A,HERPUD1,NLRC5,NUP93,SLC12A3"
TCGA.CM.6170	16	56787106	90163274	13343	0.0333	NEUTRAL	NA	304	Too-Many
TCGA.AA.A010.01A	16	56839376	56878384	17	0.3228	NEUTRAL	NA	1	NUP93
TCGA.EI.6883	16	56846803	58406705	481	-0.0196	NEUTRAL	NA	34	"ADGRG1,ADGRG3,ADGRG5,ARL2BP,CCDC102A,CCDC113,CCL17,CCL22,CETP,CFAP20,CIAPIN1,CNGB1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,HERPUD1,KATNB1,KIFC3,LOC388282,MMP15,NLRC5,NUP93,PLLP,POLR2C,PRSS54,RSPRY1,SLC12A3,TEPP,USB1,ZNF319"
TCGA.AA.A00K.01A	16	56857567	57238592	119	0.0299	NEUTRAL	NA	8	"CETP,CPNE2,FAM192A,HERPUD1,NLRC5,NUP93,RSPRY1,SLC12A3"
TCGA.AG.4009.01A	16	56868611	57088878	75	0.306	NEUTRAL	NA	5	"CETP,HERPUD1,NLRC5,NUP93,SLC12A3"
TCGA.AG.3909.01A	16	56913427	56976991	20	0.1071	NEUTRAL	NA	2	"HERPUD1,SLC12A3"
TCGA.AA.A00N.01A	16	56914003	56966150	16	0.2142	NEUTRAL	NA	2	"HERPUD1,SLC12A3"
TCGA.AG.3611.01A	16	56924131	68404742	763	0.2088	NEUTRAL	NA	117	Too-Many
TCGA.AF.A56L	16	56947274	90163274	13279	0.0822	NEUTRAL	NA	303	Too-Many
TCGA.CK.5914.01A	16	56969086	56975994	5	-0.2995	NEUTRAL	NA	1	HERPUD1
TCGA.AA.A00N.01A	16	57008937	57054654	7	-0.1277	NEUTRAL	NA	2	"CETP,NLRC5"
TCGA.AA.A00A.01A	16	57017192	57114950	42	0.1294	NEUTRAL	NA	2	"CETP,NLRC5"
TCGA.AA.A01Q.01A	16	57081399	57279212	54	-0.0024	NEUTRAL	NA	5	"ARL2BP,CPNE2,FAM192A,NLRC5,RSPRY1"
TCGA.AA.A010.01A	16	57085395	57103688	13	-0.057	NEUTRAL	NA	1	NLRC5
TCGA.AG.4009.01A	16	57089297	57104410	11	-0.0539	NEUTRAL	NA	1	NLRC5
TCGA.AA.A010.01A	16	57147193	57161692	10	-0.3236	NEUTRAL	NA	1	CPNE2
TCGA.AG.4009.01A	16	57147193	57207588	19	0.132	NEUTRAL	NA	2	"CPNE2,FAM192A"
TCGA.CA.6719	16	57151853	90163274	13189	-0.0408	NEUTRAL	NA	299	Too-Many
TCGA.AG.3909.01A	16	57197846	57272738	19	-0.1132	NEUTRAL	NA	2	"FAM192A,RSPRY1"
TCGA.CK.5914.01A	16	57197846	57710065	103	0.2342	NEUTRAL	NA	15	"ADGRG1,ADGRG3,ADGRG5,ARL2BP,CCDC102A,CCL17,CCL22,CIAPIN1,COQ9,CX3CL1,DOK4,FAM192A,PLLP,POLR2C,RSPRY1"
TCGA.AA.A00Q.01A	16	57269007	57702191	73	0.2151	NEUTRAL	NA	14	"ADGRG1,ADGRG3,ADGRG5,ARL2BP,CCDC102A,CCL17,CCL22,CIAPIN1,COQ9,CX3CL1,DOK4,PLLP,POLR2C,RSPRY1"
TCGA.AG.4009.01A	16	57283655	57295781	6	-0.3004	NEUTRAL	NA	2	"ARL2BP,PLLP"
TCGA.AG.A00C.01A	16	57290787	57465032	15	-0.0509	NEUTRAL	NA	5	"CCL17,CCL22,CIAPIN1,CX3CL1,PLLP"
TCGA.AA.A01Q.01A	16	57290787	57486694	15	0.0816	NEUTRAL	NA	6	"CCL17,CCL22,CIAPIN1,COQ9,CX3CL1,PLLP"
TCGA.AA.A00K.01A	16	57295781	57717797	69	-0.0623	NEUTRAL	NA	12	"ADGRG1,ADGRG3,ADGRG5,CCDC102A,CCL17,CCL22,CIAPIN1,COQ9,CX3CL1,DOK4,PLLP,POLR2C"
TCGA.AA.A00D.01A	16	57392665	58030970	117	0.1943	NEUTRAL	NA	18	"ADGRG1,ADGRG3,ADGRG5,CCDC102A,CCL17,CCL22,CIAPIN1,CNGB1,COQ9,CX3CL1,DOK4,DRC7,KATNB1,KIFC3,LOC388282,POLR2C,TEPP,ZNF319"
TCGA.AG.4009.01A	16	57463031	57499813	18	0.0071	NEUTRAL	NA	3	"CIAPIN1,COQ9,POLR2C"
TCGA.AA.3861.01A	16	57473102	88068868	2115	-0.0397	NEUTRAL	NA	248	Too-Many
TCGA.AA.A010.01A	16	57490394	57496864	8	-0.293	NEUTRAL	NA	2	"COQ9,POLR2C"
TCGA.AA.A01Q.01A	16	57490394	57559761	26	-0.5061	NEUTRAL	NA	4	"CCDC102A,COQ9,DOK4,POLR2C"
TCGA.AG.4009.01A	16	57503047	57554928	16	-0.462	NEUTRAL	NA	3	"CCDC102A,DOK4,POLR2C"
TCGA.AG.A00C.01A	16	57559761	57597721	5	-0.2838	NEUTRAL	NA	2	"ADGRG5,CCDC102A"
TCGA.AG.3909.01A	16	57559761	57604312	10	0.2823	NEUTRAL	NA	2	"ADGRG5,CCDC102A"
TCGA.AG.4009.01A	16	57559761	57684131	13	-0.0212	NEUTRAL	NA	3	"ADGRG1,ADGRG5,CCDC102A"
TCGA.AA.A010.01A	16	57595956	57601355	7	-0.2276	NEUTRAL	NA	1	ADGRG5
TCGA.AG.3891.01A	16	57595956	58545285	164	0.0475	NEUTRAL	NA	18	"ADGRG1,ADGRG3,ADGRG5,CCDC113,CFAP20,CNGB1,CSNK2A2,DRC7,GINS3,KATNB1,KIFC3,LOC388282,MMP15,NDRG4,PRSS54,TEPP,USB1,ZNF319"
TCGA.AA.A00A.01A	16	57600469	58078873	89	0.1266	NEUTRAL	NA	12	"ADGRG1,ADGRG3,ADGRG5,CNGB1,DRC7,KATNB1,KIFC3,LOC388282,MMP15,TEPP,USB1,ZNF319"
TCGA.AG.A00C.01A	16	57684131	57764805	36	-0.2386	NEUTRAL	NA	3	"ADGRG1,ADGRG3,DRC7"
TCGA.AA.A01I.01A	16	57693259	68710254	638	-0.2215	NEUTRAL	NA	101	Too-Many
TCGA.AA.A01Q.01A	16	57710065	57722214	8	0.0672	NEUTRAL	NA	1	ADGRG3
TCGA.AG.4009.01A	16	57712034	57735801	11	0.0955	NEUTRAL	NA	2	"ADGRG3,DRC7"
TCGA.AA.A00K.01A	16	57719547	90128319	1734	0.3455	NEUTRAL	NA	284	Too-Many
TCGA.A6.2686	16	57720964	70842096	3463	0.0051	NEUTRAL	NA	132	Too-Many
TCGA.AG.4009.01A	16	57738737	57771089	12	-0.3178	NEUTRAL	NA	2	"DRC7,KATNB1"
TCGA.AA.A00N.01A	16	57752209	57931254	42	-0.2759	NEUTRAL	NA	5	"CNGB1,DRC7,KATNB1,KIFC3,LOC388282"
TCGA.CK.5914.01A	16	57752209	57938600	46	0.1881	NEUTRAL	NA	5	"CNGB1,DRC7,KATNB1,KIFC3,LOC388282"
TCGA.AG.A00C.01A	16	57771089	57795276	13	0.3009	NEUTRAL	NA	2	"KATNB1,KIFC3"
TCGA.AA.A01Q.01A	16	57771089	57799334	22	-0.3687	NEUTRAL	NA	2	"KATNB1,KIFC3"
TCGA.AG.3909.01A	16	57771089	57799334	20	-0.1478	NEUTRAL	NA	2	"KATNB1,KIFC3"
TCGA.A6.3808.01A	16	57771089	58614520	166	0.2275	NEUTRAL	NA	16	"CCDC113,CFAP20,CNGB1,CNOT1,CSNK2A2,GINS3,KATNB1,KIFC3,LOC388282,MMP15,NDRG4,PRSS54,SETD6,TEPP,USB1,ZNF319"
TCGA.AG.4009.01A	16	57775561	58019742	57	0.2021	NEUTRAL	NA	5	"CNGB1,KATNB1,KIFC3,LOC388282,TEPP"
TCGA.AA.A00Q.01A	16	57775561	58030970	37	0.1736	NEUTRAL	NA	6	"CNGB1,KATNB1,KIFC3,LOC388282,TEPP,ZNF319"
TCGA.AG.A015.01A	16	57775561	67671551	459	0.3485	NEUTRAL	NA	66	"AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,CA7,CBFB,CCDC113,CCDC79,CDH11,CDH16,CDH5,CDH8,CES2,CES3,CES4A,CFAP20,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CNGB1,CNOT1,CSNK2A2,CTCF,DYNC1LI2,E2F4,ELMO3,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GINS3,GOT2,HSD11B2,HSF4,KATNB1,KCTD19,KIAA0895L,KIFC3,LOC388282,LOC729159,LRRC29,LRRC36,MMP15,NAE1,NDRG4,NOL3,PDP2,PLEKHG4,PRSS54,RRAD,SETD6,SLC38A7,SLC9A5,TEPP,TK2,TMEM208,TPPP3,TRADD,USB1,ZDHHC1,ZNF319"
TCGA.AG.A023.01A	16	57788787	90142216	1926	-0.2245	NEUTRAL	NA	282	Too-Many
TCGA.AG.A00C.01A	16	57796005	58742026	157	0.0317	NEUTRAL	NA	17	"CCDC113,CFAP20,CNGB1,CNOT1,CSNK2A2,GINS3,GOT2,KIFC3,LOC388282,MMP15,NDRG4,PRSS54,SETD6,SLC38A7,TEPP,USB1,ZNF319"
TCGA.AA.A01Q.01A	16	57800748	57996395	16	0.3199	NEUTRAL	NA	3	"CNGB1,KIFC3,LOC388282"
TCGA.AY.A71X	16	57834731	88792046	12775	-0.0399	NEUTRAL	NA	248	Too-Many
TCGA.AA.3979	16	57950056	68700758	3022	-0.0143	NEUTRAL	NA	95	"ACD,AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,C16orf86,CA7,CBFB,CCDC113,CCDC79,CDH11,CDH16,CDH3,CDH5,CDH8,CENPT,CES2,CES3,CES4A,CFAP20,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CNGB1,CNOT1,CSNK2A2,CTCF,CTRL,DDX28,DPEP2,DPEP3,DUS2,DYNC1LI2,E2F4,EDC4,ELMO3,ENKD1,ESRP2,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,GINS3,GOT2,HSD11B2,HSF4,KCTD19,KIAA0895L,LCAT,LOC100131303,LOC729159,LRRC29,LRRC36,MMP15,NAE1,NDRG4,NFATC3,NOL3,NRN1L,NUTF2,PARD6A,PDP2,PLA2G15,PLEKHG4,PRMT7,PRSS54,PSKH1,PSMB10,RANBP10,RLTPR,RRAD,SETD6,SLC12A4,SLC38A7,SLC7A6,SLC7A6OS,SLC9A5,SMPD3,TEPP,THAP11,TK2,TMEM208,TPPP3,TRADD,TSNAXIP1,USB1,ZDHHC1,ZFP90,ZNF319"
TCGA.AA.A01Q.01A	16	58010359	58150724	29	-0.459	NEUTRAL	NA	5	"CFAP20,MMP15,TEPP,USB1,ZNF319"
TCGA.AG.3909.01A	16	58010359	58150724	28	0.0422	NEUTRAL	NA	5	"CFAP20,MMP15,TEPP,USB1,ZNF319"
TCGA.AA.A00N.01A	16	58010359	58550117	70	-0.1777	NEUTRAL	NA	11	"CCDC113,CFAP20,CSNK2A2,GINS3,MMP15,NDRG4,PRSS54,SETD6,TEPP,USB1,ZNF319"
TCGA.CK.5914.01A	16	58010359	58564100	79	0.2435	NEUTRAL	NA	12	"CCDC113,CFAP20,CNOT1,CSNK2A2,GINS3,MMP15,NDRG4,PRSS54,SETD6,TEPP,USB1,ZNF319"
TCGA.AA.A010.01A	16	58060203	58077076	8	-0.275	NEUTRAL	NA	1	MMP15
TCGA.AF.3914.01A	16	58075482	58327580	34	0.1408	NEUTRAL	NA	5	"CCDC113,CFAP20,CSNK2A2,MMP15,PRSS54"
TCGA.AG.4009.01A	16	58147845	58201063	10	0.1069	NEUTRAL	NA	2	"CFAP20,CSNK2A2"
TCGA.AA.A01Q.01A	16	58162881	66413191	127	0.1573	NEUTRAL	NA	14	"CCDC113,CDH11,CDH5,CDH8,CFAP20,CNOT1,CSNK2A2,GINS3,GOT2,LOC729159,NDRG4,PRSS54,SETD6,SLC38A7"
TCGA.AA.3862.01A	16	58201063	88688554	1984	0.1046	NEUTRAL	NA	233	Too-Many
TCGA.AG.4009.01A	16	58201540	58230598	6	-0.4831	NEUTRAL	NA	1	CSNK2A2
TCGA.AG.3909.01A	16	58230598	58301332	7	-0.0996	NEUTRAL	NA	2	"CCDC113,CSNK2A2"
TCGA.AG.4009.01A	16	58286589	58327580	13	0.1261	NEUTRAL	NA	2	"CCDC113,PRSS54"
TCGA.F5.6465	16	58472820	59689427	355	0.0205	NEUTRAL	NA	5	"CNOT1,GOT2,NDRG4,SETD6,SLC38A7"
TCGA.AA.A00L.01A	16	58537671	58551892	10	0.0436	NEUTRAL	NA	2	"NDRG4,SETD6"
TCGA.AG.3891.01A	16	58562370	67579247	360	0.1966	NEUTRAL	NA	50	"AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,CA7,CBFB,CCDC79,CDH11,CDH16,CDH5,CDH8,CES2,CES3,CES4A,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CNOT1,DYNC1LI2,E2F4,ELMO3,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GOT2,HSD11B2,HSF4,KCTD19,KIAA0895L,LOC729159,LRRC29,LRRC36,NAE1,NOL3,PDP2,PLEKHG4,RRAD,SLC38A7,SLC9A5,TK2,TMEM208,TPPP3,TRADD,ZDHHC1"
TCGA.AA.A00N.01A	16	58565815	58585015	16	-0.1713	NEUTRAL	NA	1	CNOT1
TCGA.AG.4009.01A	16	58565815	58619192	31	-0.2386	NEUTRAL	NA	1	CNOT1
TCGA.AF.3914.01A	16	58570855	66603792	104	0.0288	NEUTRAL	NA	12	"BEAN1,CDH11,CDH5,CDH8,CKLF,CKLF-CMTM1,CMTM1,CNOT1,GOT2,LOC729159,SLC38A7,TK2"
TCGA.AG.3906.01A	16	58576088	58619192	24	0.0051	NEUTRAL	NA	1	CNOT1
TCGA.AA.A010.01A	16	58580527	58610320	15	-0.3849	NEUTRAL	NA	1	CNOT1
TCGA.AA.A010.01A	16	58612604	58622652	9	0.2397	NEUTRAL	NA	1	CNOT1
TCGA.AG.3906.01A	16	58701262	58757603	19	0.3424	NEUTRAL	NA	2	"GOT2,SLC38A7"
TCGA.AG.4009.01A	16	58742026	58750530	4	-0.0323	NEUTRAL	NA	1	GOT2
TCGA.AA.A010.01A	16	58742026	65038508	33	0.2131	NEUTRAL	NA	4	"CDH11,CDH8,GOT2,LOC729159"
TCGA.AG.A00C.01A	16	58743274	58757603	8	0.3583	NEUTRAL	NA	1	GOT2
TCGA.AA.A00N.01A	16	58743274	58767988	9	-0.5031	NEUTRAL	NA	1	GOT2
TCGA.AG.4009.01A	16	58752058	58757603	5	-0.4682	NEUTRAL	NA	1	GOT2
TCGA.AA.3982	16	58837858	59054457	78	0.2028	NEUTRAL	NA	0	None
TCGA.AA.3982	16	59064895	61631321	721	-0.2245	NEUTRAL	NA	1	LOC729159
TCGA.AA.3941	16	59064895	61744820	751	-0.2205	NEUTRAL	NA	2	"CDH8,LOC729159"
TCGA.AA.3844	16	59144803	65718498	2009	-0.0275	NEUTRAL	NA	3	"CDH11,CDH8,LOC729159"
TCGA.T9.A92H	16	59150173	62783996	1036	0.2489	NEUTRAL	NA	2	"CDH8,LOC729159"
TCGA.A6.5661	16	59194706	65912077	2102	0.1927	NEUTRAL	NA	3	"CDH11,CDH8,LOC729159"
TCGA.AA.3811	16	59334040	65680954	1941	-0.3017	NEUTRAL	NA	3	"CDH11,CDH8,LOC729159"
TCGA.AG.3890	16	59373754	69458368	2754	0.1295	NEUTRAL	NA	92	"ACD,AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,C16orf86,CA7,CBFB,CCDC79,CDH1,CDH11,CDH16,CDH3,CDH5,CDH8,CENPT,CES2,CES3,CES4A,CHTF8,CIRH1A,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,COG8,CTCF,CTRL,DDX28,DPEP2,DPEP3,DUS2,DYNC1LI2,E2F4,EDC4,ELMO3,ENKD1,ESRP2,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,HAS3,HSD11B2,HSF4,KCTD19,KIAA0895L,LCAT,LOC100131303,LOC729159,LRRC29,LRRC36,NAE1,NFATC3,NIP7,NOL3,NRN1L,NUTF2,PARD6A,PDF,PDP2,PLA2G15,PLEKHG4,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,RRAD,SLC12A4,SLC7A6,SLC7A6OS,SLC9A5,SMPD3,SNTB2,TANGO6,TERF2,THAP11,TK2,TMED6,TMEM208,TPPP3,TRADD,TSNAXIP1,VPS4A,ZDHHC1,ZFP90"
TCGA.AA.3867	16	59448266	65500715	1840	-0.0766	NEUTRAL	NA	3	"CDH11,CDH8,LOC729159"
TCGA.D5.6535	16	59572100	90163274	12520	-0.4521	NEUTRAL	NA	264	Too-Many
TCGA.AA.3872	16	59572628	59588970	8	0.0845	NEUTRAL	NA	0	None
TCGA.AA.3872	16	59592916	59915964	107	0.1913	NEUTRAL	NA	0	None
TCGA.F5.6465	16	59691139	60328894	175	0.3658	NEUTRAL	NA	0	None
TCGA.AA.3872	16	59929525	65718498	1758	0.1325	NEUTRAL	NA	3	"CDH11,CDH8,LOC729159"
TCGA.AA.3864	16	59929525	65957818	1906	-0.1337	NEUTRAL	NA	3	"CDH11,CDH8,LOC729159"
TCGA.F5.6465	16	60338862	61092757	232	0.0261	NEUTRAL	NA	1	LOC729159
TCGA.DM.A1HA	16	60434135	90163274	12258	0.0007	NEUTRAL	NA	263	Too-Many
TCGA.F5.6811.01A	16	60492545	88669717	2283	-0.3584	NEUTRAL	NA	223	Too-Many
TCGA.F5.6465	16	61094614	62138110	262	0.3498	NEUTRAL	NA	1	CDH8
TCGA.AA.3982	16	61635397	61744820	29	-0.4751	NEUTRAL	NA	1	CDH8
TCGA.AA.A00D.01A	16	61687464	65038508	22	0.1126	NEUTRAL	NA	2	"CDH11,CDH8"
TCGA.AG.A00C.01A	16	61687464	66413191	24	-0.2624	NEUTRAL	NA	3	"CDH11,CDH5,CDH8"
TCGA.AG.4009.01A	16	61687464	66422190	26	-0.0775	NEUTRAL	NA	3	"CDH11,CDH5,CDH8"
TCGA.AG.3906.01A	16	61687464	66613584	52	0.011	NEUTRAL	NA	9	"BEAN1,CDH11,CDH5,CDH8,CKLF,CKLF-CMTM1,CMTM1,CMTM2,TK2"
TCGA.AA.A02W.01A	16	61687464	90142216	1780	-0.3962	NEUTRAL	NA	263	Too-Many
TCGA.AA.3941	16	61763540	65500715	1187	-0.0809	NEUTRAL	NA	2	"CDH11,CDH8"
TCGA.AA.3982	16	61768980	64807454	919	-0.1688	NEUTRAL	NA	1	CDH8
TCGA.DM.A28M.01A	16	61823203	70916562	907	-0.1396	NEUTRAL	NA	111	Too-Many
TCGA.AA.3850	16	61883948	65598943	1200	-0.49505	NEUTRAL	NA	2	"CDH11,CDH8"
TCGA.DM.A28H	16	62038195	78614450	5328	-0.0116	NEUTRAL	NA	163	Too-Many
TCGA.CI.6619	16	62038195	90163274	11820	0	NEUTRAL	NA	263	Too-Many
TCGA.F5.6465	16	62161234	62778361	190	-0.0692	NEUTRAL	NA	0	None
TCGA.EI.7002	16	62579593	90163274	11672	-0.4743	NEUTRAL	NA	262	Too-Many
TCGA.AZ.4681	16	62633106	85923201	10056	-0.0027	NEUTRAL	NA	205	Too-Many
TCGA.AZ.4315	16	62637739	78222988	4849	-1.00E-04	NEUTRAL	NA	162	Too-Many
TCGA.F5.6465	16	62779884	64139131	415	0.359	NEUTRAL	NA	0	None
TCGA.AG.3885	16	62883357	63024432	45	-0.4273	NEUTRAL	NA	0	None
TCGA.AG.3885	16	63039688	64384868	416	0.2613	NEUTRAL	NA	0	None
TCGA.T9.A92H	16	63079318	63491955	114	0.2231	NEUTRAL	NA	0	None
TCGA.AA.3973	16	63435037	70846070	1824	0.0225	NEUTRAL	NA	110	Too-Many
TCGA.D5.6932	16	63491955	90163274	11387	0.0493	NEUTRAL	NA	262	Too-Many
TCGA.T9.A92H	16	63500047	71225564	1908	-0.325	NEUTRAL	NA	110	Too-Many
TCGA.AA.3667	16	63715558	86787449	10462	0.0138	NEUTRAL	NA	210	Too-Many
TCGA.AA.3666	16	63770083	90163274	11327	0	NEUTRAL	NA	262	Too-Many
TCGA.F5.6465	16	64152155	64619678	177	0.0059	NEUTRAL	NA	0	None
TCGA.AG.3885	16	64388647	64397521	5	-0.4404	NEUTRAL	NA	0	None
TCGA.AG.3885	16	64400751	70874791	1529	0.3214	NEUTRAL	NA	110	Too-Many
TCGA.F5.6465	16	64621019	65289732	250	0.3497	NEUTRAL	NA	1	CDH11
TCGA.AA.3982	16	64825471	65767067	361	-0.0019	NEUTRAL	NA	1	CDH11
TCGA.AA.3509.01A	16	65006756	66514492	20	0.1686	NEUTRAL	NA	3	"BEAN1,CDH11,CDH5"
TCGA.AM.5820	16	65042405	68020062	820	0.1317	NEUTRAL	NA	65	"ACD,AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,C16orf86,CA7,CBFB,CCDC79,CDH11,CDH16,CDH5,CENPT,CES2,CES3,CES4A,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CTCF,CTRL,DPEP3,DYNC1LI2,E2F4,EDC4,ELMO3,ENKD1,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,HSD11B2,HSF4,KCTD19,KIAA0895L,LCAT,LRRC29,LRRC36,NAE1,NOL3,NRN1L,NUTF2,PARD6A,PDP2,PLEKHG4,PSKH1,PSMB10,RANBP10,RLTPR,RRAD,SLC12A4,SLC9A5,THAP11,TK2,TMEM208,TPPP3,TRADD,TSNAXIP1,ZDHHC1"
TCGA.AG.A01W.01A	16	65071940	65149548	12	-0.0413	NEUTRAL	NA	1	CDH11
TCGA.AG.A01W.01A	16	65154475	65179286	9	0.3773	NEUTRAL	NA	1	CDH11
TCGA.AG.A01W.01A	16	65203928	65769367	137	0.1586	NEUTRAL	NA	0	None
TCGA.F5.6465	16	65292138	65504387	58	-0.0529	NEUTRAL	NA	0	None
TCGA.AA.3867	16	65504387	70842096	1114	0.298	NEUTRAL	NA	109	Too-Many
TCGA.F5.6465	16	65505250	68649806	751	0.3068	NEUTRAL	NA	76	"ACD,AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,C16orf86,CA7,CBFB,CCDC79,CDH16,CDH5,CENPT,CES2,CES3,CES4A,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CTCF,CTRL,DDX28,DPEP2,DPEP3,DUS2,DYNC1LI2,E2F4,EDC4,ELMO3,ENKD1,ESRP2,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,HSD11B2,HSF4,KCTD19,KIAA0895L,LCAT,LOC100131303,LRRC29,LRRC36,NAE1,NFATC3,NOL3,NRN1L,NUTF2,PARD6A,PDP2,PLA2G15,PLEKHG4,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,RRAD,SLC12A4,SLC7A6,SLC7A6OS,SLC9A5,SMPD3,THAP11,TK2,TMEM208,TPPP3,TRADD,TSNAXIP1,ZDHHC1,ZFP90"
TCGA.AA.3850	16	65599520	66122315	291	0.01435	NEUTRAL	NA	0	None
TCGA.AA.3811	16	65689129	70833948	1044	0.3093	NEUTRAL	NA	108	Too-Many
TCGA.G4.6322	16	65722079	90163274	10638	-0.0224	NEUTRAL	NA	261	Too-Many
TCGA.AA.3982	16	65767215	66084144	213	0.2858	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	65799669	65857443	31	-0.0415	NEUTRAL	NA	0	None
TCGA.A6.5661	16	65912567	70891235	936	-0.3833	NEUTRAL	NA	109	Too-Many
TCGA.EI.6883	16	65915557	69239041	680	0.0129	NEUTRAL	NA	83	"ACD,AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,C16orf86,CA7,CBFB,CCDC79,CDH1,CDH16,CDH3,CDH5,CENPT,CES2,CES3,CES4A,CHTF8,CIRH1A,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CTCF,CTRL,DDX28,DPEP2,DPEP3,DUS2,DYNC1LI2,E2F4,EDC4,ELMO3,ENKD1,ESRP2,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,HAS3,HSD11B2,HSF4,KCTD19,KIAA0895L,LCAT,LOC100131303,LRRC29,LRRC36,NAE1,NFATC3,NOL3,NRN1L,NUTF2,PARD6A,PDP2,PLA2G15,PLEKHG4,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,RRAD,SLC12A4,SLC7A6,SLC7A6OS,SLC9A5,SMPD3,SNTB2,TANGO6,THAP11,TK2,TMEM208,TPPP3,TRADD,TSNAXIP1,ZDHHC1,ZFP90"
TCGA.AA.3864	16	65957869	71419229	1049	0.1787	NEUTRAL	NA	111	Too-Many
TCGA.AA.3558	16	66065912	90163274	10417	0.0416	NEUTRAL	NA	261	Too-Many
TCGA.AA.3982	16	66086652	66104841	9	0.3242	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	66212075	66236575	8	-0.3515	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	66258661	67892192	249	0.1815	NEUTRAL	NA	56	"ACD,AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,C16orf86,CA7,CBFB,CCDC79,CDH16,CDH5,CENPT,CES2,CES3,CES4A,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CTCF,DYNC1LI2,E2F4,ELMO3,ENKD1,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,HSD11B2,HSF4,KCTD19,KIAA0895L,LRRC29,LRRC36,NAE1,NOL3,NUTF2,PARD6A,PDP2,PLEKHG4,RANBP10,RLTPR,RRAD,SLC9A5,THAP11,TK2,TMEM208,TPPP3,TRADD,TSNAXIP1,ZDHHC1"
TCGA.CK.5914.01A	16	66413191	66670260	42	-0.4822	NEUTRAL	NA	9	"BEAN1,CDH5,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,TK2"
TCGA.AG.3909.01A	16	66420675	66434673	9	0.0442	NEUTRAL	NA	1	CDH5
TCGA.AG.A00C.01A	16	66420675	66434673	9	0.2404	NEUTRAL	NA	1	CDH5
TCGA.AA.A01Q.01A	16	66420675	66757585	40	-0.4431	NEUTRAL	NA	10	"BEAN1,CDH5,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,DYNC1LI2,TK2"
TCGA.AA.A00N.01A	16	66436536	66551640	7	0.1305	NEUTRAL	NA	3	"BEAN1,CDH5,TK2"
TCGA.AG.A00C.01A	16	66436536	66562847	6	-0.2573	NEUTRAL	NA	3	"BEAN1,CDH5,TK2"
TCGA.AA.A010.01A	16	66511449	66613584	21	0.3017	NEUTRAL	NA	6	"BEAN1,CKLF,CKLF-CMTM1,CMTM1,CMTM2,TK2"
TCGA.AG.4009.01A	16	66545824	66570823	7	0.0794	NEUTRAL	NA	1	TK2
TCGA.AA.3509.01A	16	66545824	66788829	42	-0.2743	NEUTRAL	NA	8	"CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,DYNC1LI2,TK2"
TCGA.AG.4009.01A	16	66575723	66603792	8	-0.4894	NEUTRAL	NA	4	"CKLF,CKLF-CMTM1,CMTM1,TK2"
TCGA.A6.3808.01A	16	66582800	67655308	293	-0.251	NEUTRAL	NA	43	"AGRP,ATP6V0D1,B3GNT9,C16orf70,CA7,CBFB,CCDC79,CDH16,CES2,CES3,CES4A,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CTCF,DYNC1LI2,E2F4,ELMO3,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,HSD11B2,HSF4,KCTD19,KIAA0895L,LRRC29,LRRC36,NAE1,NOL3,PDP2,PLEKHG4,RRAD,SLC9A5,TK2,TMEM208,TPPP3,TRADD,ZDHHC1"
TCGA.AG.3909.01A	16	66620848	66670260	10	-0.3507	NEUTRAL	NA	3	"CMTM2,CMTM3,CMTM4"
TCGA.AA.A00L.01A	16	66642161	66646439	4	-0.3236	NEUTRAL	NA	1	CMTM3
TCGA.AG.4009.01A	16	66670260	67174365	97	-0.2314	NEUTRAL	NA	14	"C16orf70,CA7,CBFB,CCDC79,CDH16,CES2,CES3,CES4A,CMTM4,DYNC1LI2,FAM96B,NAE1,PDP2,RRAD"
TCGA.AG.A00C.01A	16	66757585	66803825	12	0.1746	NEUTRAL	NA	2	"CCDC79,DYNC1LI2"
TCGA.AA.A01Q.01A	16	66759682	66887232	32	0.0153	NEUTRAL	NA	4	"CA7,CCDC79,DYNC1LI2,NAE1"
TCGA.AG.3906.01A	16	66806445	66921157	27	-0.06	NEUTRAL	NA	4	"CA7,CCDC79,NAE1,PDP2"
TCGA.AA.3509.01A	16	66811059	70154364	633	-0.0944	NEUTRAL	NA	86	"ACD,AGRP,ATP6V0D1,B3GNT9,C16orf70,C16orf86,CA7,CBFB,CCDC79,CDH1,CDH16,CDH3,CENPT,CES2,CES3,CES4A,CHTF8,CIRH1A,CLEC18A,COG8,CTCF,CTRL,CYB5B,DDX28,DPEP2,DPEP3,DUS2,E2F4,EDC4,ELMO3,ENKD1,ESRP2,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,HAS3,HSD11B2,HSF4,KCTD19,KIAA0895L,LCAT,LOC100131303,LRRC29,LRRC36,NAE1,NFAT5,NFATC3,NIP7,NOB1,NOL3,NQO1,NRN1L,NUTF2,PARD6A,PDF,PDP2,PDPR,PLA2G15,PLEKHG4,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,RRAD,SLC12A4,SLC7A6,SLC7A6OS,SLC9A5,SMPD3,SNTB2,TANGO6,TERF2,THAP11,TMED6,TMEM208,TPPP3,TRADD,TSNAXIP1,VPS4A,WWP2,ZDHHC1,ZFP90"
TCGA.CM.6166	16	66812796	70850892	574	-0.0138	NEUTRAL	NA	99	"AARS,ACD,AGRP,ATP6V0D1,B3GNT9,C16orf70,C16orf86,CA7,CBFB,CCDC79,CDH1,CDH16,CDH3,CENPT,CES2,CES3,CES4A,CHTF8,CIRH1A,CLEC18A,CLEC18C,COG4,COG8,CTCF,CTRL,CYB5B,DDX19A,DDX19B,DDX28,DPEP2,DPEP3,DUS2,E2F4,EDC4,ELMO3,ENKD1,ESRP2,EXOC3L1,EXOSC6,FAM65A,FAM96B,FBXL8,FHOD1,FUK,GFOD2,HAS3,HSD11B2,HSF4,HYDIN,IL34,KCTD19,KIAA0895L,LCAT,LOC100131303,LRRC29,LRRC36,MTSS1L,NAE1,NFAT5,NFATC3,NIP7,NOB1,NOL3,NQO1,NRN1L,NUTF2,PARD6A,PDF,PDP2,PDPR,PLA2G15,PLEKHG4,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,RRAD,SF3B3,SLC12A4,SLC7A6,SLC7A6OS,SLC9A5,SMPD3,SNTB2,ST3GAL2,TANGO6,TERF2,THAP11,TMED6,TMEM208,TPPP3,TRADD,TSNAXIP1,VAC14,VPS4A,WWP2,ZDHHC1,ZFP90"
TCGA.AA.A010.01A	16	66822020	66919391	29	0.0714	NEUTRAL	NA	4	"CA7,CCDC79,NAE1,PDP2"
TCGA.AF.3914.01A	16	66836861	66919391	24	0.0427	NEUTRAL	NA	3	"CA7,NAE1,PDP2"
TCGA.CK.5914.01A	16	66878313	66958691	25	0.2654	NEUTRAL	NA	4	"CA7,CDH16,PDP2,RRAD"
TCGA.AG.3909.01A	16	66880886	67035182	52	0.2439	NEUTRAL	NA	8	"CA7,CDH16,CES2,CES3,CES4A,FAM96B,PDP2,RRAD"
TCGA.AA.A010.01A	16	66921157	66977142	30	-0.4897	NEUTRAL	NA	5	"CDH16,CES2,FAM96B,PDP2,RRAD"
TCGA.AG.A026	16	66939737	67320017	36	-0.3494	NEUTRAL	NA	22	"B3GNT9,C16orf70,CBFB,CDH16,CES2,CES3,CES4A,E2F4,ELMO3,EXOC3L1,FAM96B,FBXL8,FHOD1,HSF4,KIAA0895L,LRRC29,NOL3,PLEKHG4,RRAD,SLC9A5,TMEM208,TRADD"
TCGA.AG.A011.01A	16	66942258	66943842	3	-0.3792	NEUTRAL	NA	1	CDH16
TCGA.AA.A00N.01A	16	66942258	66951850	13	0.1951	NEUTRAL	NA	1	CDH16
TCGA.AG.A00C.01A	16	66942258	69303996	451	0.2181	NEUTRAL	NA	69	"ACD,AGRP,ATP6V0D1,B3GNT9,C16orf70,C16orf86,CBFB,CDH1,CDH16,CDH3,CENPT,CES2,CES3,CES4A,CHTF8,CIRH1A,CTCF,CTRL,DDX28,DPEP2,DPEP3,DUS2,E2F4,EDC4,ELMO3,ENKD1,ESRP2,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,HAS3,HSD11B2,HSF4,KCTD19,KIAA0895L,LCAT,LOC100131303,LRRC29,LRRC36,NFATC3,NOL3,NRN1L,NUTF2,PARD6A,PLA2G15,PLEKHG4,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,RRAD,SLC12A4,SLC7A6,SLC7A6OS,SLC9A5,SMPD3,SNTB2,TANGO6,THAP11,TMEM208,TPPP3,TRADD,TSNAXIP1,ZDHHC1,ZFP90"
TCGA.AG.A011.01A	16	66944153	67418756	153	0.3761	NEUTRAL	NA	24	"B3GNT9,C16orf70,CBFB,CDH16,CES2,CES3,CES4A,E2F4,ELMO3,EXOC3L1,FAM96B,FBXL8,FHOD1,HSF4,KCTD19,KIAA0895L,LRRC29,LRRC36,NOL3,PLEKHG4,RRAD,SLC9A5,TMEM208,TRADD"
TCGA.AG.3906.01A	16	66944153	67683313	204	0.3329	NEUTRAL	NA	32	"AGRP,ATP6V0D1,B3GNT9,C16orf70,CBFB,CDH16,CES2,CES3,CES4A,CTCF,E2F4,ELMO3,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,HSD11B2,HSF4,KCTD19,KIAA0895L,LRRC29,LRRC36,NOL3,PLEKHG4,RLTPR,RRAD,SLC9A5,TMEM208,TPPP3,TRADD,ZDHHC1"
TCGA.CK.5914.01A	16	66966056	67709011	236	-0.1154	NEUTRAL	NA	35	"ACD,AGRP,ATP6V0D1,B3GNT9,C16orf70,C16orf86,CBFB,CES2,CES3,CES4A,CTCF,E2F4,ELMO3,ENKD1,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,HSD11B2,HSF4,KCTD19,KIAA0895L,LRRC29,LRRC36,NOL3,PARD6A,PLEKHG4,RLTPR,SLC9A5,TMEM208,TPPP3,TRADD,ZDHHC1"
TCGA.AF.3914.01A	16	66971898	67035182	22	0.1886	NEUTRAL	NA	3	"CES2,CES3,CES4A"
TCGA.AA.A010.01A	16	66977704	67035182	15	0.2026	NEUTRAL	NA	3	"CES2,CES3,CES4A"
TCGA.AA.A01Q.01A	16	67034524	67144009	12	0.233	NEUTRAL	NA	3	"C16orf70,CBFB,CES4A"
TCGA.AG.3909.01A	16	67036924	67289248	80	-0.3927	NEUTRAL	NA	16	"B3GNT9,C16orf70,CBFB,CES4A,E2F4,ELMO3,EXOC3L1,FBXL8,FHOD1,HSF4,KIAA0895L,LRRC29,NOL3,SLC9A5,TMEM208,TRADD"
TCGA.AF.3914.01A	16	67100538	67174365	11	-0.1295	NEUTRAL	NA	2	"C16orf70,CBFB"
TCGA.AA.A01Q.01A	16	67153957	67213681	25	-0.4076	NEUTRAL	NA	7	"B3GNT9,C16orf70,FBXL8,HSF4,KIAA0895L,NOL3,TRADD"
TCGA.AA.A00L.01A	16	67179209	67241481	28	0.0795	NEUTRAL	NA	11	"B3GNT9,C16orf70,E2F4,ELMO3,EXOC3L1,FBXL8,HSF4,KIAA0895L,LRRC29,NOL3,TRADD"
TCGA.AA.A00N.01A	16	67180905	67761203	187	-0.5027	NEUTRAL	NA	31	"ACD,AGRP,ATP6V0D1,B3GNT9,C16orf70,C16orf86,CTCF,E2F4,ELMO3,ENKD1,EXOC3L1,FAM65A,FBXL8,FHOD1,GFOD2,HSD11B2,HSF4,KCTD19,KIAA0895L,LRRC29,LRRC36,NOL3,PARD6A,PLEKHG4,RANBP10,RLTPR,SLC9A5,TMEM208,TPPP3,TRADD,ZDHHC1"
TCGA.AF.3914.01A	16	67189057	67223465	24	-0.1646	NEUTRAL	NA	6	"EXOC3L1,FBXL8,HSF4,KIAA0895L,NOL3,TRADD"
TCGA.AF.3914.01A	16	67233082	67671551	114	-0.4166	NEUTRAL	NA	15	"AGRP,ATP6V0D1,CTCF,ELMO3,FAM65A,FHOD1,HSD11B2,KCTD19,LRRC29,LRRC36,PLEKHG4,SLC9A5,TMEM208,TPPP3,ZDHHC1"
TCGA.AA.A01Q.01A	16	67233425	67281092	19	-0.4395	NEUTRAL	NA	4	"ELMO3,FHOD1,LRRC29,TMEM208"
TCGA.AG.4009.01A	16	67233425	67281092	20	-0.3108	NEUTRAL	NA	4	"ELMO3,FHOD1,LRRC29,TMEM208"
TCGA.AA.A00Z.01A	16	67236488	86601465	29	-0.2998	NEUTRAL	NA	178	Too-Many
TCGA.AA.A01Q.01A	16	67286426	67304594	10	0.2923	NEUTRAL	NA	1	SLC9A5
TCGA.AG.3909.01A	16	67289649	67433211	55	0.2978	NEUTRAL	NA	6	"KCTD19,LRRC36,PLEKHG4,SLC9A5,TPPP3,ZDHHC1"
TCGA.AA.A00L.01A	16	67298213	67360533	12	0.0219	NEUTRAL	NA	3	"KCTD19,PLEKHG4,SLC9A5"
TCGA.AA.A01Q.01A	16	67313900	67321752	9	-0.4636	NEUTRAL	NA	1	PLEKHG4
TCGA.AG.A026	16	67322856	70827887	518	-1.00E-04	NEUTRAL	NA	73	"AARS,ACD,AGRP,ATP6V0D1,C16orf86,CDH1,CDH3,CENPT,CHTF8,CIRH1A,CLEC18A,CLEC18C,COG4,COG8,CTCF,CTRL,CYB5B,DDX19A,DDX19B,DDX28,DPEP2,DPEP3,DUS2,EDC4,ENKD1,ESRP2,EXOSC6,FAM65A,FUK,GFOD2,HAS3,HSD11B2,IL34,KCTD19,LCAT,LOC100131303,LRRC36,MTSS1L,NFAT5,NFATC3,NIP7,NOB1,NQO1,NRN1L,NUTF2,PARD6A,PDF,PDPR,PLA2G15,PLEKHG4,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,SF3B3,SLC12A4,SLC7A6,SLC7A6OS,SMPD3,SNTB2,ST3GAL2,TANGO6,TERF2,THAP11,TMED6,TPPP3,TSNAXIP1,VAC14,VPS4A,WWP2,ZDHHC1,ZFP90"
TCGA.AG.4009.01A	16	67333219	67415995	17	-0.3377	NEUTRAL	NA	2	"KCTD19,LRRC36"
TCGA.AA.A01Q.01A	16	67412465	67429338	7	-0.1676	NEUTRAL	NA	3	"LRRC36,TPPP3,ZDHHC1"
TCGA.AA.A00L.01A	16	67418756	67579247	33	0.071	NEUTRAL	NA	7	"AGRP,ATP6V0D1,FAM65A,HSD11B2,LRRC36,TPPP3,ZDHHC1"
TCGA.AG.A011.01A	16	67424050	72984327	742	0.0702	NEUTRAL	NA	91	"AARS,ACD,AGRP,AP1G1,ATP6V0D1,ATXN1L,C16orf86,CALB2,CDH1,CDH3,CENPT,CHST4,CHTF8,CIRH1A,CLEC18A,CLEC18C,CMTR2,COG4,COG8,CTCF,CTRL,CYB5B,DDX19A,DDX19B,DDX28,DHODH,DHX38,DPEP2,DPEP3,DUS2,EDC4,ENKD1,ESRP2,EXOSC6,FAM65A,FUK,GFOD2,HAS3,HP,HPR,HSD11B2,HYDIN,IL34,IST1,LCAT,LOC100131303,MARVELD3,MTSS1L,NFAT5,NFATC3,NIP7,NOB1,NQO1,NRN1L,NUTF2,PARD6A,PDF,PDPR,PHLPP2,PKD1L3,PLA2G15,PMFBP1,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,SF3B3,SLC12A4,SLC7A6,SLC7A6OS,SMPD3,SNTB2,ST3GAL2,TANGO6,TAT,TERF2,THAP11,TMED6,TPPP3,TSNAXIP1,TXNL4B,VAC14,VPS4A,WWP2,ZDHHC1,ZFHX3,ZFP90,ZNF19,ZNF23,ZNF821"
TCGA.AA.A01Q.01A	16	67432068	67579247	28	-0.5123	NEUTRAL	NA	5	"AGRP,ATP6V0D1,FAM65A,HSD11B2,ZDHHC1"
TCGA.AG.3909.01A	16	67434848	67579247	25	-0.1725	NEUTRAL	NA	5	"AGRP,ATP6V0D1,FAM65A,HSD11B2,ZDHHC1"
TCGA.AG.4009.01A	16	67476944	67517125	7	0.2737	NEUTRAL	NA	2	"AGRP,ATP6V0D1"
TCGA.AG.4009.01A	16	67644696	67683682	18	-0.2232	NEUTRAL	NA	2	"CTCF,RLTPR"
TCGA.AA.A01Q.01A	16	67644696	67865943	49	0.0249	NEUTRAL	NA	10	"ACD,C16orf86,CENPT,CTCF,ENKD1,GFOD2,PARD6A,RANBP10,RLTPR,TSNAXIP1"
TCGA.AG.3909.01A	16	67688034	67695774	10	0.374	NEUTRAL	NA	3	"ACD,PARD6A,RLTPR"
TCGA.AF.3914.01A	16	67698868	90142216	1712	-0.0229	NEUTRAL	NA	213	Too-Many
TCGA.AG.4009.01A	16	67699947	67857477	19	-3.00E-04	NEUTRAL	NA	5	"C16orf86,ENKD1,GFOD2,RANBP10,TSNAXIP1"
TCGA.AG.A015.01A	16	67701730	67898982	32	0.2807	NEUTRAL	NA	7	"C16orf86,CENPT,GFOD2,NUTF2,RANBP10,THAP11,TSNAXIP1"
TCGA.AG.3906.01A	16	67701730	68269530	118	0.1522	NEUTRAL	NA	21	"C16orf86,CENPT,CTRL,DDX28,DPEP2,DPEP3,DUS2,EDC4,ESRP2,GFOD2,LCAT,LOC100131303,NFATC3,NRN1L,NUTF2,PSKH1,PSMB10,RANBP10,SLC12A4,THAP11,TSNAXIP1"
TCGA.AG.3891.01A	16	67709011	70219746	340	0.288	NEUTRAL	NA	47	"CDH1,CDH3,CENPT,CHTF8,CIRH1A,CLEC18A,CLEC18C,COG8,CTRL,CYB5B,DDX28,DPEP2,DPEP3,DUS2,EDC4,ESRP2,GFOD2,HAS3,LCAT,LOC100131303,NFAT5,NFATC3,NIP7,NOB1,NQO1,NRN1L,NUTF2,PDF,PDPR,PLA2G15,PRMT7,PSKH1,PSMB10,RANBP10,SLC12A4,SLC7A6,SLC7A6OS,SMPD3,SNTB2,TANGO6,TERF2,THAP11,TMED6,TSNAXIP1,VPS4A,WWP2,ZFP90"
TCGA.AA.A00N.01A	16	67761607	67805865	10	0.2991	NEUTRAL	NA	1	RANBP10
TCGA.AG.3909.01A	16	67839284	67865943	17	4.00E-04	NEUTRAL	NA	3	"CENPT,RANBP10,TSNAXIP1"
TCGA.CK.5914.01A	16	67839284	68071890	83	-0.278	NEUTRAL	NA	17	"CENPT,CTRL,DDX28,DPEP2,DPEP3,DUS2,EDC4,LCAT,LOC100131303,NRN1L,NUTF2,PSKH1,PSMB10,RANBP10,SLC12A4,THAP11,TSNAXIP1"
TCGA.AA.A010.01A	16	67854710	67917851	32	-0.4266	NEUTRAL	NA	5	"CENPT,EDC4,NUTF2,THAP11,TSNAXIP1"
TCGA.AG.4009.01A	16	67858434	67917851	29	-0.51	NEUTRAL	NA	5	"CENPT,EDC4,NUTF2,THAP11,TSNAXIP1"
TCGA.AA.A00Q.01A	16	67902177	67917851	13	0.0409	NEUTRAL	NA	2	"EDC4,NUTF2"
TCGA.AG.3909.01A	16	67917851	67919577	3	0.0221	NEUTRAL	NA	2	"EDC4,NRN1L"
TCGA.AA.A010.01A	16	67918745	67977854	14	0.3045	NEUTRAL	NA	6	"CTRL,LCAT,NRN1L,PSKH1,PSMB10,SLC12A4"
TCGA.AG.4009.01A	16	67918745	67991574	24	-0.0953	NEUTRAL	NA	6	"CTRL,LCAT,NRN1L,PSKH1,PSMB10,SLC12A4"
TCGA.AG.A01W.01A	16	67924098	67963616	17	-0.1412	NEUTRAL	NA	2	"CTRL,PSKH1"
TCGA.AA.A01F.01A	16	67965659	67973766	5	-0.3068	NEUTRAL	NA	2	"CTRL,PSMB10"
TCGA.AG.3909.01A	16	67976214	68055431	30	-0.3293	NEUTRAL	NA	6	"DDX28,DPEP2,DPEP3,LCAT,LOC100131303,SLC12A4"
TCGA.AA.A01F.01A	16	67976214	70365597	265	0.1812	NEUTRAL	NA	39	"AARS,CDH1,CDH3,CHTF8,CIRH1A,CLEC18A,CLEC18C,COG8,CYB5B,DDX19B,DDX28,DPEP2,DPEP3,DUS2,ESRP2,EXOSC6,HAS3,LCAT,LOC100131303,NFAT5,NFATC3,NIP7,NOB1,NQO1,PDF,PDPR,PLA2G15,PRMT7,SLC12A4,SLC7A6,SLC7A6OS,SMPD3,SNTB2,TANGO6,TERF2,TMED6,VPS4A,WWP2,ZFP90"
TCGA.AA.A010.01A	16	67978698	67984838	10	-0.3817	NEUTRAL	NA	1	SLC12A4
TCGA.AG.A015.01A	16	68010563	68090210	19	0.3334	NEUTRAL	NA	5	"DDX28,DPEP2,DPEP3,DUS2,LOC100131303"
TCGA.A6.3808.01A	16	68013492	68119538	25	0.3062	NEUTRAL	NA	6	"DDX28,DPEP2,DPEP3,DUS2,LOC100131303,NFATC3"
TCGA.AM.5820	16	68024994	68260082	17	-0.3669	NEUTRAL	NA	5	"DDX28,DPEP2,DUS2,LOC100131303,NFATC3"
TCGA.AA.A010.01A	16	68026826	68087411	5	0.2799	NEUTRAL	NA	4	"DDX28,DPEP2,DUS2,LOC100131303"
TCGA.AG.4009.01A	16	68055431	68248184	24	-0.2548	NEUTRAL	NA	3	"DDX28,DUS2,NFATC3"
TCGA.AA.A01Q.01A	16	68055431	69395258	154	-0.0673	NEUTRAL	NA	23	"CDH1,CDH3,CHTF8,CIRH1A,COG8,DDX28,DUS2,ESRP2,HAS3,NFATC3,NIP7,PDF,PLA2G15,PRMT7,SLC7A6,SLC7A6OS,SMPD3,SNTB2,TANGO6,TERF2,TMED6,VPS4A,ZFP90"
TCGA.AA.A00N.01A	16	68083329	68160299	16	-0.0343	NEUTRAL	NA	2	"DUS2,NFATC3"
TCGA.CK.5914.01A	16	68104795	68355246	45	-0.0605	NEUTRAL	NA	7	"DUS2,ESRP2,NFATC3,PLA2G15,PRMT7,SLC7A6,SLC7A6OS"
TCGA.AG.A015.01A	16	68112614	69965668	201	0.3057	NEUTRAL	NA	27	"CDH1,CDH3,CHTF8,CIRH1A,COG8,CYB5B,DUS2,ESRP2,HAS3,NFAT5,NFATC3,NIP7,NOB1,NQO1,PDF,PLA2G15,PRMT7,SLC7A6,SLC7A6OS,SMPD3,SNTB2,TANGO6,TERF2,TMED6,VPS4A,WWP2,ZFP90"
TCGA.AA.A010.01A	16	68119538	68224648	9	0.264	NEUTRAL	NA	1	NFATC3
TCGA.AA.A029.01A	16	68155959	90142216	1339	-0.3785	NEUTRAL	NA	193	Too-Many
TCGA.AG.3909.01A	16	68191762	68337878	33	-0.0179	NEUTRAL	NA	5	"ESRP2,NFATC3,PLA2G15,SLC7A6,SLC7A6OS"
TCGA.AM.5820	16	68265238	68365954	19	0.1312	NEUTRAL	NA	5	"ESRP2,PLA2G15,PRMT7,SLC7A6,SLC7A6OS"
TCGA.A6.3808.01A	16	68267182	68943072	91	0.2597	NEUTRAL	NA	10	"CDH1,CDH3,ESRP2,PLA2G15,PRMT7,SLC7A6,SLC7A6OS,SMPD3,TANGO6,ZFP90"
TCGA.AG.A01W.01A	16	68302344	68525336	29	0.0138	NEUTRAL	NA	4	"PRMT7,SLC7A6,SLC7A6OS,SMPD3"
TCGA.F4.6461	16	68303409	90163274	10009	-0.0249	NEUTRAL	NA	190	Too-Many
TCGA.AG.4009.01A	16	68321602	68331103	7	-0.4194	NEUTRAL	NA	1	SLC7A6
TCGA.AG.4009.01A	16	68335126	69117337	72	0.0957	NEUTRAL	NA	8	"CDH1,CDH3,PRMT7,SLC7A6,SLC7A6OS,SMPD3,TANGO6,ZFP90"
TCGA.AG.3906.01A	16	68335126	69778726	152	0.1535	NEUTRAL	NA	22	"CDH1,CDH3,CHTF8,CIRH1A,COG8,CYB5B,HAS3,NFAT5,NIP7,NOB1,NQO1,PDF,PRMT7,SLC7A6,SLC7A6OS,SMPD3,SNTB2,TANGO6,TERF2,TMED6,VPS4A,ZFP90"
TCGA.AA.A00N.01A	16	68381459	68712000	22	-0.1576	NEUTRAL	NA	4	"CDH3,PRMT7,SMPD3,ZFP90"
TCGA.AA.A00Q.01A	16	68389587	68404742	8	-0.0773	NEUTRAL	NA	2	"PRMT7,SMPD3"
TCGA.AM.5820	16	68474856	69948496	289	-0.1337	NEUTRAL	NA	20	"CDH1,CDH3,CHTF8,CIRH1A,COG8,CYB5B,HAS3,NFAT5,NIP7,NOB1,NQO1,PDF,SMPD3,SNTB2,TANGO6,TERF2,TMED6,VPS4A,WWP2,ZFP90"
TCGA.AG.A01W.01A	16	68532209	68777238	23	0.0957	NEUTRAL	NA	3	"CDH1,CDH3,ZFP90"
TCGA.AG.3611.01A	16	68597899	88891126	968	0.224	NEUTRAL	NA	156	Too-Many
TCGA.F5.6465	16	68650917	68732976	24	0.0029	NEUTRAL	NA	1	CDH3
TCGA.AA.A01I.01A	16	68713675	70384386	198	-0.329	NEUTRAL	NA	25	"AARS,CDH1,CDH3,CHTF8,CIRH1A,CLEC18A,CLEC18C,COG8,CYB5B,DDX19A,DDX19B,EXOSC6,HAS3,NFAT5,NIP7,NOB1,NQO1,PDF,PDPR,SNTB2,TANGO6,TERF2,TMED6,VPS4A,WWP2"
TCGA.F5.6465	16	68734590	68783670	11	-0.3982	NEUTRAL	NA	1	CDH1
TCGA.F5.6465	16	68795373	69590295	151	-0.0083	NEUTRAL	NA	13	"CDH1,CHTF8,CIRH1A,COG8,CYB5B,HAS3,NIP7,PDF,SNTB2,TANGO6,TERF2,TMED6,VPS4A"
TCGA.AA.A00N.01A	16	68857280	68914395	11	-0.0304	NEUTRAL	NA	2	"CDH1,TANGO6"
TCGA.AG.A01W.01A	16	68860971	69058731	42	-0.1706	NEUTRAL	NA	2	"CDH1,TANGO6"
TCGA.AF.4110	16	69046744	90163274	9870	0.3284	NEUTRAL	NA	183	Too-Many
TCGA.AG.A01W.01A	16	69081665	69129686	19	-0.091	NEUTRAL	NA	1	TANGO6
TCGA.CK.5914.01A	16	69143287	69729002	78	-0.1514	NEUTRAL	NA	12	"CHTF8,CIRH1A,COG8,CYB5B,HAS3,NFAT5,NIP7,PDF,SNTB2,TERF2,TMED6,VPS4A"
TCGA.AG.3909.01A	16	69147297	69177034	11	-0.485	NEUTRAL	NA	3	"CHTF8,CIRH1A,HAS3"
TCGA.AG.4009.01A	16	69177034	69293936	13	-0.2934	NEUTRAL	NA	2	"CIRH1A,SNTB2"
TCGA.AA.A00N.01A	16	69184398	69293936	13	-0.1778	NEUTRAL	NA	2	"CIRH1A,SNTB2"
TCGA.AA.3979	16	69224614	83487593	6914	-0.0079	NEUTRAL	NA	96	"AARS,ADAMTS18,ADAT1,AP1G1,ATMIN,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDH13,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18A,CLEC18B,CLEC18C,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,COG4,COG8,CTRB1,CTRB2,CYB5B,DDX19A,DDX19B,DHODH,DHX38,DYNLRB2,EXOSC6,FA2H,FUK,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSD17B2,HYDIN,IL34,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,MPHOSPH6,MTSS1L,NFAT5,NIP7,NOB1,NPIPB15,NQO1,NUDT7,PDF,PDPR,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SF3B3,SNTB2,ST3GAL2,SYCE1L,TAT,TERF2,TERF2IP,TMED6,TMEM170A,TMEM231,TXNL4B,VAC14,VAT1L,VPS4A,WDR59,WWOX,WWP2,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.CL.5917	16	69238163	70842096	242	-0.0027	NEUTRAL	NA	27	"AARS,CLEC18A,CLEC18C,COG4,COG8,CYB5B,DDX19A,DDX19B,EXOSC6,FUK,HYDIN,IL34,MTSS1L,NFAT5,NIP7,NOB1,NQO1,PDF,PDPR,SF3B3,SNTB2,ST3GAL2,TERF2,TMED6,VAC14,VPS4A,WWP2"
TCGA.AG.3909.01A	16	69317933	69390771	25	-0.4183	NEUTRAL	NA	7	"COG8,NIP7,PDF,SNTB2,TERF2,TMED6,VPS4A"
TCGA.AG.4009.01A	16	69375036	69602323	21	-0.2476	NEUTRAL	NA	5	"CYB5B,NFAT5,NIP7,TERF2,TMED6"
TCGA.AA.A01Q.01A	16	69400721	69951582	40	0.3187	NEUTRAL	NA	6	"CYB5B,NFAT5,NOB1,NQO1,TERF2,WWP2"
TCGA.AG.A00C.01A	16	69458540	72050868	378	0.008	NEUTRAL	NA	34	"AARS,AP1G1,ATXN1L,CALB2,CHST4,CLEC18A,CLEC18C,CMTR2,COG4,CYB5B,DDX19A,DDX19B,DHODH,EXOSC6,FUK,HYDIN,IL34,IST1,MARVELD3,MTSS1L,NFAT5,NOB1,NQO1,PDPR,PHLPP2,PKD1L3,SF3B3,ST3GAL2,TAT,VAC14,WWP2,ZNF19,ZNF23,ZNF821"
TCGA.AG.3890	16	69466274	69509505	11	-0.3988	NEUTRAL	NA	1	CYB5B
TCGA.AG.3890	16	69510469	90163274	9767	0.0984	NEUTRAL	NA	171	Too-Many
TCGA.EI.6883	16	69581671	70859683	189	-0.0337	NEUTRAL	NA	19	"AARS,CLEC18A,CLEC18C,COG4,DDX19A,DDX19B,EXOSC6,FUK,HYDIN,IL34,MTSS1L,NFAT5,NOB1,NQO1,PDPR,SF3B3,ST3GAL2,VAC14,WWP2"
TCGA.F5.6465	16	69605348	70859683	184	0.3408	NEUTRAL	NA	19	"AARS,CLEC18A,CLEC18C,COG4,DDX19A,DDX19B,EXOSC6,FUK,HYDIN,IL34,MTSS1L,NFAT5,NOB1,NQO1,PDPR,SF3B3,ST3GAL2,VAC14,WWP2"
TCGA.AG.4009.01A	16	69660256	70211125	68	0.0976	NEUTRAL	NA	7	"CLEC18A,CLEC18C,NFAT5,NOB1,NQO1,PDPR,WWP2"
TCGA.AA.A010.01A	16	69729002	69760238	6	0.0922	NEUTRAL	NA	2	"NFAT5,NQO1"
TCGA.AG.3906.01A	16	69820857	69965668	15	0.1203	NEUTRAL	NA	1	WWP2
TCGA.AA.A010.01A	16	69833025	70284954	48	0.2956	NEUTRAL	NA	5	"CLEC18A,CLEC18C,EXOSC6,PDPR,WWP2"
TCGA.CK.5914.01A	16	69959273	70161111	21	-0.0467	NEUTRAL	NA	3	"CLEC18A,PDPR,WWP2"
TCGA.AA.A01Q.01A	16	69959273	70516581	71	-0.0845	NEUTRAL	NA	11	"AARS,CLEC18A,CLEC18C,COG4,DDX19A,DDX19B,EXOSC6,FUK,PDPR,ST3GAL2,WWP2"
TCGA.AG.A01W.01A	16	69963540	69981145	10	-0.19	NEUTRAL	NA	1	WWP2
TCGA.AG.3909.01A	16	69964996	70154364	15	-0.2025	NEUTRAL	NA	3	"CLEC18A,PDPR,WWP2"
TCGA.AG.3906.01A	16	69967834	69988209	10	-0.2058	NEUTRAL	NA	2	"CLEC18A,WWP2"
TCGA.AA.3531	16	69968200	70855478	113	0.0695	NEUTRAL	NA	16	"AARS,CLEC18A,CLEC18C,COG4,DDX19A,DDX19B,EXOSC6,FUK,HYDIN,IL34,MTSS1L,PDPR,SF3B3,ST3GAL2,VAC14,WWP2"
TCGA.AG.3906.01A	16	69996823	70219746	19	0.2328	NEUTRAL	NA	3	"CLEC18A,CLEC18C,PDPR"
TCGA.AM.5820	16	70052383	70682693	55	-0.0522	NEUTRAL	NA	11	"AARS,CLEC18C,COG4,DDX19A,DDX19B,EXOSC6,FUK,IL34,PDPR,SF3B3,ST3GAL2"
TCGA.AA.A00N.01A	16	70165156	70211125	15	0.0401	NEUTRAL	NA	2	"CLEC18C,PDPR"
TCGA.AG.3909.01A	16	70190330	70348734	26	0.279	NEUTRAL	NA	5	"AARS,CLEC18C,DDX19B,EXOSC6,PDPR"
TCGA.AA.3509.01A	16	70211125	70310342	21	0.0227	NEUTRAL	NA	3	"AARS,CLEC18C,EXOSC6"
TCGA.CK.5914.01A	16	70219746	70316485	21	-0.242	NEUTRAL	NA	3	"AARS,CLEC18C,EXOSC6"
TCGA.AG.A01W.01A	16	70244147	70260640	8	-0.2878	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	70263601	70568610	72	0.2026	NEUTRAL	NA	8	"AARS,COG4,DDX19A,DDX19B,EXOSC6,FUK,SF3B3,ST3GAL2"
TCGA.AA.A00L.01A	16	70286572	70289584	5	-0.3881	NEUTRAL	NA	1	AARS
TCGA.AG.4009.01A	16	70298833	70333139	11	-0.1577	NEUTRAL	NA	2	"AARS,DDX19B"
TCGA.AG.A015.01A	16	70303509	75664303	495	0.3171	NEUTRAL	NA	54	"AARS,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CMTR2,COG4,CTRB1,CTRB2,DDX19A,DDX19B,DHODH,DHX38,FA2H,FUK,GABARAPL2,GLG1,HP,HPR,HYDIN,IL34,IST1,KARS,LDHD,MARVELD3,MLKL,MTSS1L,NPIPB15,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SF3B3,ST3GAL2,TAT,TMEM170A,TMEM231,TXNL4B,VAC14,WDR59,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.A00N.01A	16	70333139	70359436	7	0.2361	NEUTRAL	NA	1	DDX19B
TCGA.CK.5914.01A	16	70333139	70553507	67	0.2896	NEUTRAL	NA	5	"COG4,DDX19A,DDX19B,FUK,ST3GAL2"
TCGA.AG.4009.01A	16	70346436	70506844	42	0.2695	NEUTRAL	NA	4	"DDX19A,DDX19B,FUK,ST3GAL2"
TCGA.AG.3906.01A	16	70359436	70501733	29	0.3074	NEUTRAL	NA	4	"DDX19A,DDX19B,FUK,ST3GAL2"
TCGA.AA.3509.01A	16	70359436	70819593	120	-0.1101	NEUTRAL	NA	9	"COG4,DDX19A,DDX19B,FUK,IL34,MTSS1L,SF3B3,ST3GAL2,VAC14"
TCGA.AA.A01F.01A	16	70367354	70428848	17	-0.1213	NEUTRAL	NA	3	"DDX19A,DDX19B,ST3GAL2"
TCGA.AA.A00N.01A	16	70384386	70432098	17	0.1784	NEUTRAL	NA	2	"DDX19A,ST3GAL2"
TCGA.AA.A01I.01A	16	70395268	90142216	1154	-0.3235	NEUTRAL	NA	161	Too-Many
TCGA.AG.3909.01A	16	70404105	70524173	32	0.2236	NEUTRAL	NA	4	"COG4,DDX19A,FUK,ST3GAL2"
TCGA.AG.3891.01A	16	70405772	75675412	499	0.0908	NEUTRAL	NA	52	"ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CMTR2,COG4,CTRB1,CTRB2,DDX19A,DHODH,DHX38,FA2H,FUK,GABARAPL2,GLG1,HP,HPR,HYDIN,IL34,IST1,KARS,LDHD,MARVELD3,MLKL,MTSS1L,NPIPB15,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SF3B3,ST3GAL2,TAT,TMEM170A,TMEM231,TXNL4B,VAC14,WDR59,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.A00N.01A	16	70497048	70542241	31	-0.4696	NEUTRAL	NA	2	"COG4,FUK"
TCGA.AA.A010.01A	16	70497048	70543771	33	-0.067	NEUTRAL	NA	2	"COG4,FUK"
TCGA.AG.3906.01A	16	70502725	70517709	17	-0.4019	NEUTRAL	NA	2	"COG4,FUK"
TCGA.AG.4009.01A	16	70509216	70605549	47	0.0065	NEUTRAL	NA	3	"COG4,FUK,SF3B3"
TCGA.AG.A00Y.01A	16	70512137	90142216	1171	0.313	NEUTRAL	NA	159	Too-Many
TCGA.AA.A01Q.01A	16	70517709	70708202	48	0.2523	NEUTRAL	NA	4	"COG4,IL34,MTSS1L,SF3B3"
TCGA.AG.3906.01A	16	70524173	81047672	557	0.0674	NEUTRAL	NA	63	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMTR2,CNTNAP4,COG4,CTRB1,CTRB2,DHODH,DHX38,DYNLRB2,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IL34,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,MTSS1L,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SF3B3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAC14,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.A01F.01A	16	70530119	70713121	49	0.1323	NEUTRAL	NA	4	"COG4,IL34,MTSS1L,SF3B3"
TCGA.AG.A01W.01A	16	70569605	70696451	45	-0.1165	NEUTRAL	NA	3	"IL34,MTSS1L,SF3B3"
TCGA.AA.A00N.01A	16	70688399	70765346	22	-0.4329	NEUTRAL	NA	3	"IL34,MTSS1L,VAC14"
TCGA.CK.5914.01A	16	70688399	70765346	21	-0.298	NEUTRAL	NA	3	"IL34,MTSS1L,VAC14"
TCGA.AG.3909.01A	16	70688399	70778278	14	0.1617	NEUTRAL	NA	3	"IL34,MTSS1L,VAC14"
TCGA.AG.A01W.01A	16	70697358	73044516	76	0.3263	NEUTRAL	NA	23	"AP1G1,ATXN1L,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,MTSS1L,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,VAC14,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.AG.4009.01A	16	70765346	71423615	104	0.0282	NEUTRAL	NA	4	"CALB2,CMTR2,HYDIN,VAC14"
TCGA.AA.A010.01A	16	70765346	71724375	130	0.3499	NEUTRAL	NA	10	"CALB2,CHST4,CMTR2,HYDIN,MARVELD3,PHLPP2,TAT,VAC14,ZNF19,ZNF23"
TCGA.AA.A01F.01A	16	70765346	90128319	889	0.1571	NEUTRAL	NA	154	Too-Many
TCGA.G4.6294	16	70785196	70960989	59	-0.3309	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.AA.A01Q.01A	16	70796746	72827144	158	0.1203	NEUTRAL	NA	22	"AP1G1,ATXN1L,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,VAC14,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.AA.3850	16	70804909	70869420	19	0.19215	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.AM.5820	16	70805348	75236153	1329	-0.0404	NEUTRAL	NA	34	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CLEC18B,CMTR2,DHODH,DHX38,FA2H,GLG1,HP,HPR,HYDIN,IST1,LDHD,MARVELD3,MLKL,NPIPB15,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,TAT,TXNL4B,VAC14,WDR59,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3692	16	70814357	71184897	101	-0.304	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.AA.3982	16	70814786	70873764	17	-0.0081	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.A6.2675	16	70814786	71046894	71	-0.0984	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.EI.6885	16	70814786	71048780	77	-0.3698	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.AG.3727	16	70818628	71184897	99	-0.3269	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.AA.3509.01A	16	70820086	71392644	73	0.3228	NEUTRAL	NA	4	"CALB2,CMTR2,HYDIN,VAC14"
TCGA.AA.3530	16	70827887	70869420	12	-0.2965	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.AG.A026	16	70833948	70904025	28	0.2891	NEUTRAL	NA	2	"HYDIN,VAC14"
TCGA.AA.3811	16	70836369	70869420	10	-0.4854	NEUTRAL	NA	1	HYDIN
TCGA.AA.3844	16	70836369	70869420	10	0.1939	NEUTRAL	NA	1	HYDIN
TCGA.AA.3941	16	70836369	70869420	10	0.2011	NEUTRAL	NA	1	HYDIN
TCGA.AA.3527	16	70836369	71184897	92	0.0032	NEUTRAL	NA	1	HYDIN
TCGA.AA.3684	16	70842096	71184897	93	-0.2365	NEUTRAL	NA	1	HYDIN
TCGA.AG.3728	16	70842096	71184897	93	-0.4478	NEUTRAL	NA	1	HYDIN
TCGA.AA.3492	16	70842096	71191404	93	-0.3917	NEUTRAL	NA	1	HYDIN
TCGA.AA.3866	16	70842096	71230078	102	-0.0369	NEUTRAL	NA	1	HYDIN
TCGA.AA.3712	16	70846070	70960989	38	-0.1672	NEUTRAL	NA	1	HYDIN
TCGA.AA.3814	16	70846070	71001137	54	-0.1394	NEUTRAL	NA	1	HYDIN
TCGA.DY.A1DG	16	70846070	71046894	67	0.0363	NEUTRAL	NA	1	HYDIN
TCGA.AF.3913	16	70846070	71068142	74	-0.1234	NEUTRAL	NA	1	HYDIN
TCGA.AZ.6600	16	70846070	71093624	77	0.2463	NEUTRAL	NA	1	HYDIN
TCGA.AA.3819	16	70846070	71184897	92	-0.38	NEUTRAL	NA	1	HYDIN
TCGA.AA.3846	16	70846070	71184897	92	0.0727	NEUTRAL	NA	1	HYDIN
TCGA.AA.3867	16	70846070	71184897	92	-0.1338	NEUTRAL	NA	1	HYDIN
TCGA.AA.3870	16	70846070	71184897	92	-0.3673	NEUTRAL	NA	1	HYDIN
TCGA.D5.6929	16	70846070	71184897	90	-0.1079	NEUTRAL	NA	1	HYDIN
TCGA.G4.6625	16	70846070	71184897	91	-0.2065	NEUTRAL	NA	1	HYDIN
TCGA.AA.A01T	16	70846070	71191404	92	-0.3805	NEUTRAL	NA	1	HYDIN
TCGA.AA.3502	16	70846070	71196152	92	-0.3573	NEUTRAL	NA	1	HYDIN
TCGA.DM.A28K	16	70846070	71200048	93	0.3655	NEUTRAL	NA	1	HYDIN
TCGA.AA.3548	16	70846070	71202488	97	-0.4416	NEUTRAL	NA	1	HYDIN
TCGA.AA.3821	16	70846070	71202488	95	-0.3798	NEUTRAL	NA	1	HYDIN
TCGA.AY.A8YK	16	70846070	71202488	97	-0.2313	NEUTRAL	NA	1	HYDIN
TCGA.G4.6295	16	70846070	71202488	96	-0.4035	NEUTRAL	NA	1	HYDIN
TCGA.G4.6307	16	70846070	71202488	95	-0.1426	NEUTRAL	NA	1	HYDIN
TCGA.AA.3693	16	70854380	71022528	61	-0.382	NEUTRAL	NA	1	HYDIN
TCGA.AG.3893	16	70854380	71031776	57	-0.3569	NEUTRAL	NA	1	HYDIN
TCGA.CM.6166	16	70854380	71121446	82	-0.3112	NEUTRAL	NA	1	HYDIN
TCGA.D5.6538	16	70854380	71184897	88	0.2393	NEUTRAL	NA	1	HYDIN
TCGA.A6.2677	16	70854380	71225312	88	-0.469	NEUTRAL	NA	1	HYDIN
TCGA.AA.3976	16	70855478	71202488	94	-0.1458	NEUTRAL	NA	1	HYDIN
TCGA.EI.6514	16	70855478	71202488	88	-0.1553	NEUTRAL	NA	1	HYDIN
TCGA.G4.6320	16	70855478	71202488	92	-0.3897	NEUTRAL	NA	1	HYDIN
TCGA.G4.6306	16	70855632	70958507	33	0.0551	NEUTRAL	NA	1	HYDIN
TCGA.AA.3531	16	70855632	71010355	53	-0.365	NEUTRAL	NA	1	HYDIN
TCGA.AH.6547	16	70855632	71157422	85	-0.4023	NEUTRAL	NA	1	HYDIN
TCGA.D5.6930	16	70858120	70958507	32	-0.382	NEUTRAL	NA	1	HYDIN
TCGA.EI.6511	16	70858120	70971110	37	-0.3514	NEUTRAL	NA	1	HYDIN
TCGA.F5.6465	16	70869420	70965285	32	-0.0284	NEUTRAL	NA	1	HYDIN
TCGA.AD.6965	16	70869420	70990984	41	-0.4529	NEUTRAL	NA	1	HYDIN
TCGA.EI.6883	16	70869420	71135471	78	-0.3399	NEUTRAL	NA	1	HYDIN
TCGA.EI.6512	16	70873764	70965285	32	-0.0475	NEUTRAL	NA	1	HYDIN
TCGA.AA.3875	16	70873764	71202488	89	-0.4345	NEUTRAL	NA	1	HYDIN
TCGA.AG.4022	16	70873764	71225312	90	-0.2583	NEUTRAL	NA	1	HYDIN
TCGA.EI.6513	16	70883844	70976360	34	-0.4125	NEUTRAL	NA	1	HYDIN
TCGA.CI.6621	16	70883844	70990191	37	-0.4626	NEUTRAL	NA	1	HYDIN
TCGA.AF.3911	16	70883844	71048301	57	-0.0529	NEUTRAL	NA	1	HYDIN
TCGA.AA.3856	16	70883844	71202488	86	-0.1839	NEUTRAL	NA	1	HYDIN
TCGA.AG.3885	16	70883844	71202488	87	-0.1104	NEUTRAL	NA	1	HYDIN
TCGA.AA.3530	16	70886408	71001137	43	-0.0306	NEUTRAL	NA	1	HYDIN
TCGA.AA.3982	16	70886408	71001137	41	0.1462	NEUTRAL	NA	1	HYDIN
TCGA.AA.3850	16	70886408	71113485	72	0.16985	NEUTRAL	NA	1	HYDIN
TCGA.AA.3844	16	70886408	71366184	133	0.1517	NEUTRAL	NA	2	"CMTR2,HYDIN"
TCGA.AA.3858	16	70894602	71002786	43	-0.2457	NEUTRAL	NA	1	HYDIN
TCGA.AA.3681	16	70894602	90163274	9595	0.0057	NEUTRAL	NA	153	Too-Many
TCGA.DM.A1HB	16	70894888	78700673	3091	-0.0195	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.CM.6164	16	70901175	71142396	57	-0.0547	NEUTRAL	NA	1	HYDIN
TCGA.DM.A1D6	16	70902205	70990984	24	-0.3936	NEUTRAL	NA	1	HYDIN
TCGA.AG.A026	16	70913650	70960989	12	-0.2187	NEUTRAL	NA	1	HYDIN
TCGA.G4.6310	16	70924780	90163274	9571	0.2298	NEUTRAL	NA	153	Too-Many
TCGA.AA.3956	16	70928413	71235685	70	-0.1248	NEUTRAL	NA	1	HYDIN
TCGA.BM.6198	16	70944217	71200048	60	0.36005	NEUTRAL	NA	1	HYDIN
TCGA.AZ.6598	16	70958507	78458616	2894	-0.0095	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AF.6655	16	70958507	90163274	9547	0.1898	NEUTRAL	NA	153	Too-Many
TCGA.D5.6930	16	70960989	70999656	16	0.1078	NEUTRAL	NA	1	HYDIN
TCGA.DM.A1D4	16	70960989	71207878	60	0.2771	NEUTRAL	NA	1	HYDIN
TCGA.DM.A1D0	16	70960989	90163274	9497	-0.0095	NEUTRAL	NA	153	Too-Many
TCGA.G4.6306	16	70960989	90163274	9560	0.3736	NEUTRAL	NA	153	Too-Many
TCGA.AA.3712	16	70963727	90163274	9568	0.2363	NEUTRAL	NA	153	Too-Many
TCGA.G4.6294	16	70963727	90163274	9565	-0.0418	NEUTRAL	NA	153	Too-Many
TCGA.F5.6465	16	70970794	81140154	4919	0.3368	NEUTRAL	NA	62	"ADAMTS18,ADAT1,AP1G1,ATMIN,ATXN1L,BCAR1,C16orf46,C16orf47,CALB2,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,DYNLRB2,FA2H,GABARAPL2,GCSH,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.EI.6512	16	70970794	90163274	9555	0.2832	NEUTRAL	NA	153	Too-Many
TCGA.EI.6511	16	70972132	90163274	9555	-0.0092	NEUTRAL	NA	153	Too-Many
TCGA.DM.A28M.01A	16	70972470	90142216	1380	-0.1858	NEUTRAL	NA	153	Too-Many
TCGA.EI.6513	16	70978361	72059268	279	-0.0269	NEUTRAL	NA	15	"AP1G1,ATXN1L,CALB2,CHST4,CMTR2,DHODH,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,TAT,ZNF19,ZNF23,ZNF821"
TCGA.CI.6621	16	70990984	90163274	9540	-0.0354	NEUTRAL	NA	153	Too-Many
TCGA.DM.A1D6	16	70993263	75224732	1266	0.0313	NEUTRAL	NA	33	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CLEC18B,CMTR2,DHODH,DHX38,FA2H,GLG1,HP,HPR,HYDIN,IST1,LDHD,MARVELD3,MLKL,NPIPB15,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,TAT,TXNL4B,WDR59,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AD.6965	16	70993263	90163274	9537	0.0419	NEUTRAL	NA	153	Too-Many
TCGA.CM.6161	16	70997912	90163274	9542	-0.1199	NEUTRAL	NA	153	Too-Many
TCGA.D5.6930	16	71000597	71029102	12	-0.4338	NEUTRAL	NA	1	HYDIN
TCGA.AA.3982	16	71002686	71184897	37	-0.3896	NEUTRAL	NA	1	HYDIN
TCGA.AA.3531	16	71011390	90163274	9542	0.0097	NEUTRAL	NA	153	Too-Many
TCGA.AA.3814	16	71011390	90163274	9552	0.3352	NEUTRAL	NA	153	Too-Many
TCGA.AA.3530	16	71018470	71113485	25	-0.1131	NEUTRAL	NA	1	HYDIN
TCGA.AA.3854	16	71018470	78574675	3023	0.0088	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3858	16	71022528	90163274	9550	-0.0014	NEUTRAL	NA	153	Too-Many
TCGA.A6.3809	16	71028622	78717588	2896	-0.0286	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3678	16	71028622	90163274	9543	0.2704	NEUTRAL	NA	153	Too-Many
TCGA.AA.3693	16	71028622	90163274	9550	0.0094	NEUTRAL	NA	153	Too-Many
TCGA.AA.3833	16	71028622	90163274	9549	-0.0369	NEUTRAL	NA	153	Too-Many
TCGA.CK.6748	16	71028622	90163274	9530	-0.0116	NEUTRAL	NA	153	Too-Many
TCGA.F4.6806	16	71028622	90163274	9496	-0.017	NEUTRAL	NA	153	Too-Many
TCGA.AA.3831	16	71029102	78527064	2938	0.0002	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.A6.5661	16	71029102	83926345	6991	-0.2613	NEUTRAL	NA	71	"ADAMTS18,ADAT1,AP1G1,ATMIN,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDH13,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSBP1,HSD17B2,HYDIN,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,MPHOSPH6,NPIPB15,NUDT7,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.D5.6930	16	71031776	90163274	9512	-0.0128	NEUTRAL	NA	153	Too-Many
TCGA.AG.3893	16	71046894	90163274	9463	-0.0138	NEUTRAL	NA	153	Too-Many
TCGA.A6.2675	16	71048301	90163274	9478	0.1813	NEUTRAL	NA	153	Too-Many
TCGA.DY.A1DG	16	71048301	90163274	9534	0.3272	NEUTRAL	NA	153	Too-Many
TCGA.AA.3673	16	71048780	71143486	19	-0.0472	NEUTRAL	NA	1	HYDIN
TCGA.A6.2672	16	71048780	83173914	6300	-0.2746	NEUTRAL	NA	70	"ADAMTS18,ADAT1,AP1G1,ATMIN,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDH13,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSD17B2,HYDIN,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,MPHOSPH6,NPIPB15,NUDT7,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3837	16	71048780	90163274	9544	-0.324	NEUTRAL	NA	153	Too-Many
TCGA.AF.3911	16	71048780	90163274	9537	0.2756	NEUTRAL	NA	153	Too-Many
TCGA.EI.6885	16	71049390	90163274	9514	-0.0066	NEUTRAL	NA	153	Too-Many
TCGA.D5.6924	16	71049908	71166555	19	0.0033	NEUTRAL	NA	1	HYDIN
TCGA.A6.5665	16	71066842	83173914	6310	-0.2221	NEUTRAL	NA	70	"ADAMTS18,ADAT1,AP1G1,ATMIN,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDH13,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSD17B2,HYDIN,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,MPHOSPH6,NPIPB15,NUDT7,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AG.A02N	16	71093624	71143486	11	0.0295	NEUTRAL	NA	1	HYDIN
TCGA.AF.3913	16	71093624	76105171	1455	0.2958	NEUTRAL	NA	45	"ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CMTR2,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,NPIPB15,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,WDR59,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3973	16	71095319	75256359	1248	0.0668	NEUTRAL	NA	35	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CLEC18B,CMTR2,CTRB1,CTRB2,DHODH,DHX38,FA2H,GLG1,HP,HPR,HYDIN,IST1,LDHD,MARVELD3,MLKL,NPIPB15,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,TAT,TXNL4B,WDR59,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AZ.6600	16	71095319	90163274	9512	-0.0298	NEUTRAL	NA	153	Too-Many
TCGA.CL.5917	16	71110353	84447056	7271	-0.0155	NEUTRAL	NA	83	"ADAD2,ADAMTS18,ADAT1,AP1G1,ATMIN,ATP2C2,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDH13,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,DNAAF1,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSBP1,HSD17B2,HSDL1,HYDIN,IST1,KARS,KCNG4,LDHD,MAF,MARVELD3,MBTPS1,MLKL,MLYCD,MON1B,MPHOSPH6,NECAB2,NPIPB15,NUDT7,OSGIN1,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SLC38A8,SYCE1L,TAF1C,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WFDC1,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.CK.5914.01A	16	71113750	71317474	13	0.2119	NEUTRAL	NA	2	"CMTR2,HYDIN"
TCGA.CM.6166	16	71135471	90163274	9524	-0.0357	NEUTRAL	NA	153	Too-Many
TCGA.EI.6883	16	71142396	71378300	65	-0.0698	NEUTRAL	NA	2	"CMTR2,HYDIN"
TCGA.AA.3872	16	71142396	82540786	5729	0.3399	NEUTRAL	NA	69	"ADAMTS18,ADAT1,AP1G1,ATMIN,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSD17B2,HYDIN,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,MPHOSPH6,NPIPB15,NUDT7,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.NH.A5IV	16	71166555	78254249	2719	-0.0332	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AH.6547	16	71166555	90163274	9505	-0.0165	NEUTRAL	NA	153	Too-Many
TCGA.AA.3850	16	71184897	71307170	32	-0.04745	NEUTRAL	NA	1	HYDIN
TCGA.AG.A02N	16	71184897	90163274	9508	0.0136	NEUTRAL	NA	153	Too-Many
TCGA.CM.6164	16	71184897	90163274	9505	-0.0018	NEUTRAL	NA	153	Too-Many
TCGA.AA.3982	16	71188798	71366184	54	0.1246	NEUTRAL	NA	2	"CMTR2,HYDIN"
TCGA.AA.3530	16	71188798	73227727	494	0.1735	NEUTRAL	NA	22	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.AA.3870	16	71188798	73594599	683	0.0486	NEUTRAL	NA	22	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.AA.3819	16	71188798	73785860	800	0.0072	NEUTRAL	NA	22	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.AA.3811	16	71188798	74200398	951	0.1119	NEUTRAL	NA	22	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.AA.3867	16	71188798	76317873	1547	0.2347	NEUTRAL	NA	46	"ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,NPIPB15,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,WDR59,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.D5.6929	16	71188798	79020126	3382	0.2412	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3527	16	71188798	90163274	9506	0.3031	NEUTRAL	NA	153	Too-Many
TCGA.AA.3673	16	71188798	90163274	9518	0.1426	NEUTRAL	NA	153	Too-Many
TCGA.AA.3684	16	71188798	90163274	9519	0.1625	NEUTRAL	NA	153	Too-Many
TCGA.AA.3692	16	71188798	90163274	9515	0.0043	NEUTRAL	NA	153	Too-Many
TCGA.AG.3612	16	71188798	90163274	9447	-0.1062	NEUTRAL	NA	153	Too-Many
TCGA.AG.3727	16	71188798	90163274	9519	0.011	NEUTRAL	NA	153	Too-Many
TCGA.AG.3728	16	71188798	90163274	9520	0.0107	NEUTRAL	NA	153	Too-Many
TCGA.AG.3878	16	71188798	90163274	9517	0.0563	NEUTRAL	NA	153	Too-Many
TCGA.G4.6625	16	71188798	90163274	9510	0.057	NEUTRAL	NA	153	Too-Many
TCGA.AG.3580	16	71191404	90163274	9511	-0.0168	NEUTRAL	NA	153	Too-Many
TCGA.AA.3492	16	71196152	78415637	2796	-0.0125	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.A01T	16	71196152	90163274	9497	0.0681	NEUTRAL	NA	153	Too-Many
TCGA.D5.6924	16	71196152	90163274	9493	-0.0362	NEUTRAL	NA	153	Too-Many
TCGA.AA.3502	16	71200048	90163274	9500	-0.0351	NEUTRAL	NA	153	Too-Many
TCGA.DM.A28K	16	71202488	77771651	2403	-5.00E-04	NEUTRAL	NA	50	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,WDR59,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.CM.5861	16	71202488	78704198	3070	-0.0106	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.BM.6198	16	71202488	89409741	9365	-0.00255	NEUTRAL	NA	133	Too-Many
TCGA.A6.6652	16	71202488	90163274	9500	-0.0208	NEUTRAL	NA	153	Too-Many
TCGA.AA.3675	16	71202488	90163274	9514	-0.0037	NEUTRAL	NA	153	Too-Many
TCGA.AH.6544	16	71202488	90163274	9494	-0.0091	NEUTRAL	NA	153	Too-Many
TCGA.DM.A1DB	16	71202488	90163274	9505	-0.0108	NEUTRAL	NA	153	Too-Many
TCGA.DM.A28C	16	71202488	90163274	9498	-0.0361	NEUTRAL	NA	153	Too-Many
TCGA.F5.6464	16	71207878	78505947	2881	-0.0259	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.G4.6295	16	71207878	83888822	6952	0.0041	NEUTRAL	NA	71	"ADAMTS18,ADAT1,AP1G1,ATMIN,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDH13,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSBP1,HSD17B2,HYDIN,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,MPHOSPH6,NPIPB15,NUDT7,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3695	16	71207878	89425677	9370	0.0039	NEUTRAL	NA	133	Too-Many
TCGA.A6.2686	16	71207878	90163274	9489	-0.0081	NEUTRAL	NA	153	Too-Many
TCGA.A6.4107	16	71207878	90163274	9498	0.2167	NEUTRAL	NA	153	Too-Many
TCGA.AA.3548	16	71207878	90163274	9511	0.0654	NEUTRAL	NA	153	Too-Many
TCGA.AA.3821	16	71207878	90163274	9493	-0.0367	NEUTRAL	NA	153	Too-Many
TCGA.AA.3856	16	71207878	90163274	9514	0.2169	NEUTRAL	NA	153	Too-Many
TCGA.AA.3875	16	71207878	90163274	9515	0.0056	NEUTRAL	NA	153	Too-Many
TCGA.AA.3976	16	71207878	90163274	9500	0.2834	NEUTRAL	NA	153	Too-Many
TCGA.AG.3584	16	71207878	90163274	9509	-0.0594	NEUTRAL	NA	153	Too-Many
TCGA.AG.3594	16	71207878	90163274	9511	-0.0085	NEUTRAL	NA	153	Too-Many
TCGA.AG.3885	16	71207878	90163274	9512	0.2751	NEUTRAL	NA	153	Too-Many
TCGA.AY.A8YK	16	71207878	90163274	9493	0.2175	NEUTRAL	NA	153	Too-Many
TCGA.CM.5344	16	71207878	90163274	9508	-0.2369	NEUTRAL	NA	153	Too-Many
TCGA.D5.5539	16	71207878	90163274	9497	0.2188	NEUTRAL	NA	153	Too-Many
TCGA.EI.6514	16	71207878	90163274	9503	0.2443	NEUTRAL	NA	153	Too-Many
TCGA.G4.6307	16	71207878	90163274	9511	0.2808	NEUTRAL	NA	153	Too-Many
TCGA.G4.6320	16	71207878	90163274	9510	0.1534	NEUTRAL	NA	153	Too-Many
TCGA.AG.A026	16	71225312	72214612	252	-0.0258	NEUTRAL	NA	20	"AP1G1,ATXN1L,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZNF19,ZNF23,ZNF821"
TCGA.DM.A1D4	16	71225312	83602154	6686	-0.0201	NEUTRAL	NA	70	"ADAMTS18,ADAT1,AP1G1,ATMIN,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDH13,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSD17B2,HYDIN,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,MPHOSPH6,NPIPB15,NUDT7,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.DM.A1D8	16	71225564	78989934	3348	-0.0122	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.A6.2677	16	71225564	90163274	8840	0.2569	NEUTRAL	NA	153	Too-Many
TCGA.AG.4022	16	71225564	90163274	9509	0.1543	NEUTRAL	NA	153	Too-Many
TCGA.CM.6676	16	71225564	90163274	9471	0.016	NEUTRAL	NA	153	Too-Many
TCGA.T9.A92H	16	71230078	73545937	652	0.253	NEUTRAL	NA	22	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.AA.3866	16	71234988	72078485	223	0.3347	NEUTRAL	NA	15	"AP1G1,ATXN1L,CALB2,CHST4,CMTR2,DHODH,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,TAT,ZNF19,ZNF23,ZNF821"
TCGA.A6.6653	16	71234988	78594170	2994	-0.0334	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3956	16	71236077	73227727	484	0.274	NEUTRAL	NA	22	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.CA.5254	16	71242061	78426067	2804	0.2961	NEUTRAL	NA	53	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.A00N.01A	16	71317474	72050868	129	-0.0518	NEUTRAL	NA	14	"AP1G1,ATXN1L,CALB2,CHST4,CMTR2,DHODH,IST1,MARVELD3,PHLPP2,PKD1L3,TAT,ZNF19,ZNF23,ZNF821"
TCGA.AA.A017.01A	16	71317474	90142216	938	-0.1434	NEUTRAL	NA	152	Too-Many
TCGA.AA.3850	16	71330298	72312726	255	0.35595	NEUTRAL	NA	18	"AP1G1,ATXN1L,CALB2,CHST4,DHODH,DHX38,HP,HPR,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZNF19,ZNF23,ZNF821"
TCGA.AA.3509.01A	16	71406038	74446042	219	-0.1038	NEUTRAL	NA	23	"AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CLEC18B,DHODH,DHX38,HP,HPR,IST1,MARVELD3,NPIPB15,PHLPP2,PKD1L3,PMFBP1,PSMD7,TAT,TXNL4B,ZFHX3,ZNF19,ZNF23,ZNF821"
TCGA.CK.5914.01A	16	71481957	72057970	121	0.0518	NEUTRAL	NA	12	"AP1G1,ATXN1L,CHST4,DHODH,IST1,MARVELD3,PHLPP2,PKD1L3,TAT,ZNF19,ZNF23,ZNF821"
TCGA.AA.3864	16	71497917	73227727	393	0.1248	NEUTRAL	NA	18	"AP1G1,ATXN1L,C16orf47,CHST4,DHODH,DHX38,HP,HPR,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF821"
TCGA.AG.4009.01A	16	71509023	71724375	35	-0.0714	NEUTRAL	NA	5	"CHST4,MARVELD3,PHLPP2,TAT,ZNF19"
TCGA.AA.3982	16	71509587	71509778	3	-0.4603	NEUTRAL	NA	1	ZNF19
TCGA.AA.3982	16	71512579	73545937	549	0.3649	NEUTRAL	NA	18	"AP1G1,ATXN1L,C16orf47,CHST4,DHODH,DHX38,HP,HPR,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF821"
TCGA.AG.4009.01A	16	71736454	71779326	7	-0.3683	NEUTRAL	NA	2	"AP1G1,PHLPP2"
TCGA.AG.4009.01A	16	71780439	71883902	17	-0.0348	NEUTRAL	NA	2	"AP1G1,ATXN1L"
TCGA.AA.A010.01A	16	71784101	71799354	8	0.1013	NEUTRAL	NA	1	AP1G1
TCGA.AA.A010.01A	16	71808323	71893944	10	0.1501	NEUTRAL	NA	3	"AP1G1,ATXN1L,ZNF821"
TCGA.AA.A010.01A	16	71895629	71950922	7	-0.499	NEUTRAL	NA	2	"IST1,ZNF821"
TCGA.AG.4009.01A	16	71949487	72205005	69	0.1027	NEUTRAL	NA	8	"DHODH,DHX38,HP,HPR,IST1,PKD1L3,PMFBP1,TXNL4B"
TCGA.AA.A010.01A	16	71954587	71987983	19	0.2386	NEUTRAL	NA	2	"IST1,PKD1L3"
TCGA.CM.6165.01A	16	72000985	90142216	1233	-0.1161	NEUTRAL	NA	140	Too-Many
TCGA.A6.6780	16	72028538	78487876	2632	-0.0045	NEUTRAL	NA	40	"ADAMTS18,ADAT1,BCAR1,C16orf47,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,KARS,LDHD,MLKL,MON1B,NPIPB15,NUDT7,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNRF1"
TCGA.AG.A00C.01A	16	72054975	72205005	58	-0.2726	NEUTRAL	NA	6	"DHODH,DHX38,HP,HPR,PMFBP1,TXNL4B"
TCGA.AA.A010.01A	16	72088453	72110172	12	0.0493	NEUTRAL	NA	2	"HP,HPR"
TCGA.CK.5914.01A	16	72135387	72142649	11	0.0812	NEUTRAL	NA	1	DHX38
TCGA.AA.3866	16	72137560	90163274	9270	0.2604	NEUTRAL	NA	135	Too-Many
TCGA.AA.A00D.01A	16	72137827	72205005	30	0.0102	NEUTRAL	NA	2	"DHX38,PMFBP1"
TCGA.AA.A00L.01A	16	72164380	72992464	22	0.0052	NEUTRAL	NA	2	"PMFBP1,ZFHX3"
TCGA.AA.3844	16	72187956	72930588	155	0.3016	NEUTRAL	NA	2	"PMFBP1,ZFHX3"
TCGA.AA.A010.01A	16	72198626	72205005	2	-0.3934	NEUTRAL	NA	1	PMFBP1
TCGA.AA.A00N.01A	16	72205005	74447439	35	-0.4749	NEUTRAL	NA	6	"C16orf47,CLEC18B,NPIPB15,PMFBP1,PSMD7,ZFHX3"
TCGA.AG.A026	16	72216937	72373597	47	-0.3464	NEUTRAL	NA	0	None
TCGA.AG.A026	16	72380982	79005750	3059	-0.0008	NEUTRAL	NA	33	"ADAMTS18,ADAT1,BCAR1,C16orf47,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CNTNAP4,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,MON1B,NPIPB15,NUDT7,PSMD7,RFWD3,SYCE1L,TERF2IP,TMEM170A,TMEM231,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNRF1"
TCGA.AA.3850	16	72423680	72887825	77	0.00445	NEUTRAL	NA	1	ZFHX3
TCGA.AG.4009.01A	16	72821036	74446633	27	-0.4686	NEUTRAL	NA	5	"C16orf47,CLEC18B,NPIPB15,PSMD7,ZFHX3"
TCGA.AG.A00C.01A	16	72821036	74678255	63	0.0879	NEUTRAL	NA	7	"C16orf47,CLEC18B,GLG1,NPIPB15,PSMD7,RFWD3,ZFHX3"
TCGA.CK.5914.01A	16	72821036	74773871	90	0.1788	NEUTRAL	NA	9	"C16orf47,CLEC18B,FA2H,GLG1,MLKL,NPIPB15,PSMD7,RFWD3,ZFHX3"
TCGA.AA.A00D.01A	16	72821036	81015350	235	0.314	NEUTRAL	NA	37	"ADAMTS18,ADAT1,BCAR1,C16orf47,CDYL2,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CNTNAP4,CTRB1,CTRB2,DYNLRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MAF,MLKL,MON1B,NPIPB15,NUDT7,PSMD7,RFWD3,SYCE1L,TERF2IP,TMEM170A,TMEM231,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNRF1"
TCGA.AA.A01Q.01A	16	72827466	74447439	27	-0.2571	NEUTRAL	NA	5	"C16orf47,CLEC18B,NPIPB15,PSMD7,ZFHX3"
TCGA.EI.7004	16	72886442	90163274	9107	-0.3747	NEUTRAL	NA	133	Too-Many
TCGA.EI.6508	16	72945119	78218015	2295	0.0096	NEUTRAL	NA	33	"ADAMTS18,ADAT1,BCAR1,C16orf47,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CNTNAP4,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,MON1B,NPIPB15,NUDT7,PSMD7,RFWD3,SYCE1L,TERF2IP,TMEM170A,TMEM231,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNRF1"
TCGA.AG.A011.01A	16	72991297	74334896	4	-0.3737	NEUTRAL	NA	3	"C16orf47,PSMD7,ZFHX3"
TCGA.AG.A01W.01A	16	73048017	73483847	59	-0.0536	NEUTRAL	NA	2	"C16orf47,ZFHX3"
TCGA.EI.6513	16	73132838	90163274	9050	-0.023	NEUTRAL	NA	132	Too-Many
TCGA.AA.3850	16	73233831	73269458	6	-0.49185	NEUTRAL	NA	0	None
TCGA.AA.3864	16	73258620	78561115	2463	0.038	NEUTRAL	NA	31	"ADAMTS18,ADAT1,BCAR1,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CNTNAP4,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,MON1B,NPIPB15,NUDT7,PSMD7,RFWD3,SYCE1L,TERF2IP,TMEM170A,TMEM231,VAT1L,WDR59,WWOX,ZFP1,ZNRF1"
TCGA.AA.3956	16	73258620	90163274	9010	0.2228	NEUTRAL	NA	131	Too-Many
TCGA.AA.3844	16	73269458	74150909	439	0.329	NEUTRAL	NA	0	None
TCGA.AA.3530	16	73269458	90163274	8992	0.1166	NEUTRAL	NA	131	Too-Many
TCGA.AA.3850	16	73331407	73378933	27	-0.04145	NEUTRAL	NA	0	None
TCGA.AA.3850	16	73418502	73481915	46	0.18325	NEUTRAL	NA	0	None
TCGA.AA.3850	16	73503893	73706847	100	0.02695	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	73509270	73557101	10	-0.0815	NEUTRAL	NA	0	None
TCGA.T9.A92H	16	73550342	81104708	4191	-0.3162	NEUTRAL	NA	38	"ADAMTS18,ADAT1,ATMIN,BCAR1,C16orf46,CDYL2,CENPN,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CNTNAP4,CTRB1,CTRB2,DYNLRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MAF,MLKL,MON1B,NPIPB15,NUDT7,PSMD7,RFWD3,SYCE1L,TERF2IP,TMEM170A,TMEM231,VAT1L,WDR59,WWOX,ZFP1,ZNRF1"
TCGA.AA.3982	16	73557061	74200398	289	0.2016	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	73576292	79635401	193	0.3187	NEUTRAL	NA	32	"ADAMTS18,ADAT1,BCAR1,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CNTNAP4,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MAF,MLKL,MON1B,NPIPB15,NUDT7,PSMD7,RFWD3,SYCE1L,TERF2IP,TMEM170A,TMEM231,VAT1L,WDR59,WWOX,ZFP1,ZNRF1"
TCGA.AA.3870	16	73670333	90163274	8792	0.0217	NEUTRAL	NA	131	Too-Many
TCGA.AA.3850	16	73713682	74219988	221	0.04675	NEUTRAL	NA	0	None
TCGA.AA.3819	16	73786037	73810453	19	-0.4565	NEUTRAL	NA	0	None
TCGA.AA.3819	16	73813065	90163274	8700	0.0063	NEUTRAL	NA	131	Too-Many
TCGA.AA.3811	16	74206061	75726135	371	0.3756	NEUTRAL	NA	23	"ADAT1,BCAR1,CFDP1,CHST5,CHST6,CLEC18B,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,NPIPB15,PSMD7,RFWD3,TERF2IP,TMEM170A,TMEM231,WDR59,ZFP1,ZNRF1"
TCGA.AG.3909.01A	16	74333958	74451915	15	-0.1257	NEUTRAL	NA	3	"CLEC18B,NPIPB15,PSMD7"
TCGA.AG.A011.01A	16	74335415	90142216	837	0.0933	NEUTRAL	NA	131	Too-Many
TCGA.A6.3808.01A	16	74336052	75690053	176	-0.1399	NEUTRAL	NA	23	"ADAT1,BCAR1,CFDP1,CHST5,CHST6,CLEC18B,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,NPIPB15,PSMD7,RFWD3,TERF2IP,TMEM170A,TMEM231,WDR59,ZFP1,ZNRF1"
TCGA.AA.A010.01A	16	74425412	74447439	11	-0.2637	NEUTRAL	NA	2	"CLEC18B,NPIPB15"
TCGA.AG.4009.01A	16	74447439	74708846	43	0.0697	NEUTRAL	NA	4	"CLEC18B,GLG1,MLKL,RFWD3"
TCGA.AA.A00N.01A	16	74451915	74678255	37	0.3704	NEUTRAL	NA	3	"CLEC18B,GLG1,RFWD3"
TCGA.AA.A01Q.01A	16	74451915	84005671	296	0.1563	NEUTRAL	NA	50	"ADAMTS18,ADAT1,ATMIN,BCAR1,BCO1,C16orf46,CDH13,CDYL2,CENPN,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CNTNAP4,CTRB1,CTRB2,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HSBP1,HSD17B2,KARS,LDHD,MAF,MLKL,MLYCD,MON1B,MPHOSPH6,NECAB2,NUDT7,OSGIN1,PKD1L2,PLCG2,RFWD3,SDR42E1,SYCE1L,TERF2IP,TMEM170A,TMEM231,VAT1L,WDR59,WWOX,ZFP1,ZNRF1"
TCGA.AA.3509.01A	16	74485901	76311503	161	-0.0701	NEUTRAL	NA	21	"ADAT1,BCAR1,CFDP1,CHST5,CHST6,CNTNAP4,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,RFWD3,TERF2IP,TMEM170A,TMEM231,WDR59,ZFP1,ZNRF1"
TCGA.AG.3909.01A	16	74542691	74773871	29	0.3646	NEUTRAL	NA	4	"FA2H,GLG1,MLKL,RFWD3"
TCGA.AA.A00N.01A	16	74682994	74726187	12	-0.4647	NEUTRAL	NA	2	"MLKL,RFWD3"
TCGA.AG.4009.01A	16	74709166	74760076	11	0.3619	NEUTRAL	NA	2	"FA2H,MLKL"
TCGA.AG.A00C.01A	16	74712741	75690053	96	0.1243	NEUTRAL	NA	18	"ADAT1,BCAR1,CFDP1,CHST5,CHST6,CTRB1,CTRB2,FA2H,GABARAPL2,KARS,LDHD,MLKL,TERF2IP,TMEM170A,TMEM231,WDR59,ZFP1,ZNRF1"
TCGA.AG.4009.01A	16	74761111	81056153	189	-0.1135	NEUTRAL	NA	30	"ADAMTS18,ADAT1,BCAR1,CDYL2,CENPN,CFDP1,CHST5,CHST6,CLEC3A,CMC2,CNTNAP4,CTRB1,CTRB2,DYNLRB2,FA2H,GABARAPL2,KARS,LDHD,MAF,MON1B,NUDT7,SYCE1L,TERF2IP,TMEM170A,TMEM231,VAT1L,WDR59,WWOX,ZFP1,ZNRF1"
TCGA.CK.5914.01A	16	75018790	75498349	43	0.1442	NEUTRAL	NA	9	"BCAR1,CFDP1,CTRB1,CTRB2,LDHD,TMEM170A,WDR59,ZFP1,ZNRF1"
TCGA.AG.3731	16	75116265	75492705	97	0.2999	NEUTRAL	NA	8	"BCAR1,CFDP1,CTRB1,CTRB2,LDHD,TMEM170A,ZFP1,ZNRF1"
TCGA.AG.3909.01A	16	75146224	75276707	19	0.0996	NEUTRAL	NA	5	"BCAR1,CTRB1,CTRB2,LDHD,ZFP1"
TCGA.AA.A00N.01A	16	75146224	75563028	41	-0.2895	NEUTRAL	NA	9	"BCAR1,CFDP1,CHST5,CHST6,CTRB1,CTRB2,LDHD,TMEM170A,ZFP1"
TCGA.DM.A1D6	16	75236153	90163274	8282	-0.0024	NEUTRAL	NA	120	Too-Many
TCGA.AA.3841	16	75263660	88081638	7926	0.1471	NEUTRAL	NA	75	"ADAD2,ADAMTS18,ADAT1,ATMIN,ATP2C2,BANP,BCAR1,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CDH13,CDYL2,CENPN,CFDP1,CHST5,CHST6,CLEC3A,CMC2,CMIP,CNTNAP4,COTL1,COX4I1,CRISPLD2,DNAAF1,DYNLRB2,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GABARAPL2,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IRF8,JPH3,KARS,KCNG4,KIAA0513,KLHDC4,KLHL36,MAF,MAP1LC3B,MBTPS1,MLYCD,MON1B,MPHOSPH6,MTHFSD,NECAB2,NUDT7,OSGIN1,PKD1L2,PLCG2,SDR42E1,SLC38A8,SLC7A5,SYCE1L,TAF1C,TERF2IP,TLDC1,TMEM170A,TMEM231,USP10,VAT1L,WFDC1,WWOX,ZCCHC14,ZDHHC7"
TCGA.AM.5820	16	75308898	75998655	141	-0.1497	NEUTRAL	NA	9	"ADAT1,CFDP1,CHST5,CHST6,GABARAPL2,KARS,TERF2IP,TMEM170A,TMEM231"
TCGA.AA.A010.01A	16	75338924	76571996	66	0.1315	NEUTRAL	NA	10	"ADAT1,CFDP1,CHST5,CHST6,CNTNAP4,GABARAPL2,KARS,TERF2IP,TMEM170A,TMEM231"
TCGA.AA.3973	16	75505045	88081883	7871	0.0517	NEUTRAL	NA	72	"ADAD2,ADAMTS18,ADAT1,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CDH13,CDYL2,CENPN,CHST5,CHST6,CLEC3A,CMC2,CMIP,CNTNAP4,COTL1,COX4I1,CRISPLD2,DNAAF1,DYNLRB2,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GABARAPL2,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IRF8,JPH3,KARS,KCNG4,KIAA0513,KLHDC4,KLHL36,MAF,MAP1LC3B,MBTPS1,MLYCD,MON1B,MPHOSPH6,MTHFSD,NECAB2,NUDT7,OSGIN1,PKD1L2,PLCG2,SDR42E1,SLC38A8,SLC7A5,SYCE1L,TAF1C,TERF2IP,TLDC1,TMEM231,USP10,VAT1L,WFDC1,WWOX,ZCCHC14,ZDHHC7"
TCGA.AG.3731	16	75505045	90163274	8227	-0.0677	NEUTRAL	NA	115	Too-Many
TCGA.CK.5914.01A	16	75512492	75690053	39	-0.2366	NEUTRAL	NA	7	"ADAT1,CHST5,CHST6,GABARAPL2,KARS,TERF2IP,TMEM231"
TCGA.AA.A00N.01A	16	75589675	75663261	17	-0.1269	NEUTRAL	NA	4	"ADAT1,GABARAPL2,KARS,TMEM231"
TCGA.AG.A015.01A	16	75665007	75681744	10	-0.2182	NEUTRAL	NA	2	"KARS,TERF2IP"
TCGA.AG.3891.01A	16	75678142	77225331	30	-0.2306	NEUTRAL	NA	4	"CNTNAP4,KARS,MON1B,TERF2IP"
TCGA.AG.A015.01A	16	75688133	81161324	123	0.2879	NEUTRAL	NA	18	"ADAMTS18,ATMIN,C16orf46,CDYL2,CENPN,CLEC3A,CMC2,CNTNAP4,DYNLRB2,GCSH,MAF,MON1B,NUDT7,PKD1L2,SYCE1L,TERF2IP,VAT1L,WWOX"
TCGA.AA.3844	16	75728074	75872463	24	0.2819	NEUTRAL	NA	0	None
TCGA.AA.3941	16	75728074	77103136	583	0.1891	NEUTRAL	NA	1	CNTNAP4
TCGA.AA.3811	16	75728074	81074799	3500	0.0327	NEUTRAL	NA	14	"ADAMTS18,ATMIN,CDYL2,CENPN,CLEC3A,CMC2,CNTNAP4,DYNLRB2,MAF,MON1B,NUDT7,SYCE1L,VAT1L,WWOX"
TCGA.AA.3850	16	75798378	77573512	887	-0.25945	NEUTRAL	NA	4	"ADAMTS18,CNTNAP4,MON1B,SYCE1L"
TCGA.AA.3844	16	75904513	76290604	191	0.2026	NEUTRAL	NA	0	None
TCGA.AA.3982	16	75955973	77439110	749	0.051	NEUTRAL	NA	4	"ADAMTS18,CNTNAP4,MON1B,SYCE1L"
TCGA.AM.5820	16	76011176	79566149	2427	-0.0157	NEUTRAL	NA	8	"ADAMTS18,CLEC3A,CNTNAP4,MON1B,NUDT7,SYCE1L,VAT1L,WWOX"
TCGA.AF.3913	16	76116062	79189533	2087	0.2315	NEUTRAL	NA	8	"ADAMTS18,CLEC3A,CNTNAP4,MON1B,NUDT7,SYCE1L,VAT1L,WWOX"
TCGA.AG.A00C.01A	16	76311503	76509788	11	-0.3447	NEUTRAL	NA	1	CNTNAP4
TCGA.AA.3867	16	76324005	90163274	7952	0.2335	NEUTRAL	NA	108	Too-Many
TCGA.AA.3844	16	76325825	76444862	79	0.2052	NEUTRAL	NA	1	CNTNAP4
TCGA.AA.3549	16	76418990	77087100	277	0.0252	NEUTRAL	NA	1	CNTNAP4
TCGA.AA.3844	16	76457329	77100931	267	0.0889	NEUTRAL	NA	1	CNTNAP4
TCGA.AG.A00C.01A	16	76513287	76555014	5	0.2971	NEUTRAL	NA	1	CNTNAP4
TCGA.AG.A00C.01A	16	76555919	78056477	47	-0.1606	NEUTRAL	NA	7	"ADAMTS18,CLEC3A,CNTNAP4,MON1B,NUDT7,SYCE1L,VAT1L"
TCGA.AA.3509.01A	16	76587672	81030882	82	-0.0088	NEUTRAL	NA	12	"ADAMTS18,CDYL2,CLEC3A,CMC2,CNTNAP4,DYNLRB2,MAF,MON1B,NUDT7,SYCE1L,VAT1L,WWOX"
TCGA.AA.3844	16	77101054	77277004	95	0.3629	NEUTRAL	NA	2	"MON1B,SYCE1L"
TCGA.AG.3909.01A	16	77225331	77240281	7	-0.3313	NEUTRAL	NA	2	"MON1B,SYCE1L"
TCGA.CK.5914.01A	16	77245964	81015350	65	0.375	NEUTRAL	NA	10	"ADAMTS18,CDYL2,CLEC3A,CMC2,DYNLRB2,MAF,NUDT7,SYCE1L,VAT1L,WWOX"
TCGA.AA.3844	16	77277289	77308334	13	-0.1064	NEUTRAL	NA	0	None
TCGA.AA.3941	16	77277289	77308334	13	-0.0017	NEUTRAL	NA	0	None
TCGA.AG.3891.01A	16	77317802	89643900	621	0.0823	NEUTRAL	NA	88	"ACSF3,ADAD2,ADAMTS18,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDT1,CDYL2,CENPN,CLEC3A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DNAAF1,DYNLRB2,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAF,MAP1LC3B,MBTPS1,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,NUDT7,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPG7,TAF1C,TLDC1,TRAPPC2L,USP10,VAT1L,WFDC1,WWOX,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF469,ZNF778"
TCGA.AA.3982	16	77444372	77479419	33	0.2368	NEUTRAL	NA	1	ADAMTS18
TCGA.AA.3844	16	77444508	80920075	2632	0.3442	NEUTRAL	NA	8	"ADAMTS18,CDYL2,CLEC3A,DYNLRB2,MAF,NUDT7,VAT1L,WWOX"
TCGA.AA.3982	16	77495743	78916838	1119	0.3468	NEUTRAL	NA	4	"CLEC3A,NUDT7,VAT1L,WWOX"
TCGA.AA.3850	16	77576791	83810690	4664	0.13365	NEUTRAL	NA	21	"ATMIN,BCO1,C16orf46,CDH13,CDYL2,CENPN,CLEC3A,CMC2,CMIP,DYNLRB2,GAN,GCSH,HSD17B2,MAF,MPHOSPH6,NUDT7,PKD1L2,PLCG2,SDR42E1,VAT1L,WWOX"
TCGA.AY.6197	16	77596318	82663437	3528	-0.0378	NEUTRAL	NA	21	"ATMIN,BCO1,C16orf46,CDH13,CDYL2,CENPN,CLEC3A,CMC2,CMIP,DYNLRB2,GAN,GCSH,HSD17B2,MAF,MPHOSPH6,NUDT7,PKD1L2,PLCG2,SDR42E1,VAT1L,WWOX"
TCGA.CM.5348	16	77766841	90163274	7100	0.1574	NEUTRAL	NA	104	Too-Many
TCGA.A6.6138	16	77902863	90163274	7014	-0.468	NEUTRAL	NA	103	Too-Many
TCGA.D5.6530	16	78021922	78022829	3	-0.4502	NEUTRAL	NA	0	None
TCGA.DM.A28K	16	78113752	90163274	6841	-0.0132	NEUTRAL	NA	101	Too-Many
TCGA.D5.6530	16	78188799	90163274	6831	-0.0579	NEUTRAL	NA	101	Too-Many
TCGA.AG.A00C.01A	16	78198029	81015350	20	-0.157	NEUTRAL	NA	5	"CDYL2,CMC2,DYNLRB2,MAF,WWOX"
TCGA.F4.6856	16	78198235	78280175	50	-0.2983	NEUTRAL	NA	1	WWOX
TCGA.EI.6508	16	78273029	78905502	544	-0.0392	NEUTRAL	NA	1	WWOX
TCGA.DM.A1DA	16	78273029	90163274	6772	-0.1924	NEUTRAL	NA	101	Too-Many
TCGA.F4.6856	16	78280444	90163274	6760	0.0047	NEUTRAL	NA	101	Too-Many
TCGA.AA.3968	16	78323529	78712616	330	-0.4148	NEUTRAL	NA	1	WWOX
TCGA.AA.3715	16	78348394	90163274	6744	-0.0174	NEUTRAL	NA	101	Too-Many
TCGA.CA.5254	16	78426103	78505905	63	-0.0888	NEUTRAL	NA	1	WWOX
TCGA.D5.6532	16	78432491	78469168	26	0.0259	NEUTRAL	NA	1	WWOX
TCGA.AA.3492	16	78449394	78843515	369	-0.0411	NEUTRAL	NA	1	WWOX
TCGA.AA.3511	16	78454903	78980428	506	-0.492	NEUTRAL	NA	1	WWOX
TCGA.DM.A28F	16	78463511	78599202	164	-0.0727	NEUTRAL	NA	1	WWOX
TCGA.EI.6882	16	78492824	90163274	6642	-0.0191	NEUTRAL	NA	101	Too-Many
TCGA.AZ.4315	16	78497192	90163274	6642	-0.0465	NEUTRAL	NA	101	Too-Many
TCGA.AA.3518	16	78499156	78773273	261	-0.2967	NEUTRAL	NA	1	WWOX
TCGA.A6.2681	16	78502353	78642805	154	-0.4966	NEUTRAL	NA	1	WWOX
TCGA.F5.6464	16	78505991	78706296	192	-0.3327	NEUTRAL	NA	1	WWOX
TCGA.A6.6780	16	78522183	90163274	6592	0.0034	NEUTRAL	NA	101	Too-Many
TCGA.AA.3831	16	78529917	78729623	192	-0.5139	NEUTRAL	NA	1	WWOX
TCGA.CA.5254	16	78533356	78587804	77	-0.0926	NEUTRAL	NA	1	WWOX
TCGA.AZ.4616	16	78538759	78682506	134	-0.4233	NEUTRAL	NA	1	WWOX
TCGA.NH.A5IV	16	78559733	78704318	114	-0.0844	NEUTRAL	NA	1	WWOX
TCGA.AA.3854	16	78578899	78621372	30	-0.3887	NEUTRAL	NA	1	WWOX
TCGA.AA.3864	16	78579461	78713066	97	-0.1524	NEUTRAL	NA	1	WWOX
TCGA.CA.5254	16	78588356	78679044	63	0.2439	NEUTRAL	NA	1	WWOX
TCGA.D5.6927	16	78588570	78934514	306	-0.398	NEUTRAL	NA	1	WWOX
TCGA.CK.5913	16	78591552	78776032	132	-0.4708	NEUTRAL	NA	1	WWOX
TCGA.CA.5797	16	78599202	78751232	107	-0.1389	NEUTRAL	NA	1	WWOX
TCGA.DM.A28F	16	78599678	90066935	6458	0.3198	NEUTRAL	NA	98	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPBD1,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DEF8,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAF,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,WWOX,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AZ.6598	16	78621372	90163274	6496	-0.0375	NEUTRAL	NA	101	Too-Many
TCGA.AA.3854	16	78622687	78693667	45	-0.4318	NEUTRAL	NA	1	WWOX
TCGA.A6.2681	16	78645312	90163274	6475	0.1544	NEUTRAL	NA	101	Too-Many
TCGA.AD.6964	16	78646203	78940403	279	-0.4896	NEUTRAL	NA	1	WWOX
TCGA.F5.6814	16	78666151	78768310	84	-0.4692	NEUTRAL	NA	1	WWOX
TCGA.DM.A28H	16	78681585	82720705	2861	-0.0057	NEUTRAL	NA	18	"ATMIN,BCO1,C16orf46,CDH13,CDYL2,CENPN,CMC2,CMIP,DYNLRB2,GAN,GCSH,HSD17B2,MAF,MPHOSPH6,PKD1L2,PLCG2,SDR42E1,WWOX"
TCGA.AZ.4616	16	78693667	90163274	6436	0.117	NEUTRAL	NA	101	Too-Many
TCGA.AA.3854	16	78693757	88061575	6089	0.0169	NEUTRAL	NA	58	"ADAD2,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CDH13,CDYL2,CENPN,CMC2,CMIP,COTL1,COX4I1,CRISPLD2,DNAAF1,DYNLRB2,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,MAF,MAP1LC3B,MBTPS1,MLYCD,MPHOSPH6,MTHFSD,NECAB2,OSGIN1,PKD1L2,PLCG2,SDR42E1,SLC38A8,SLC7A5,TAF1C,TLDC1,USP10,WFDC1,WWOX,ZCCHC14,ZDHHC7"
TCGA.AA.3543	16	78705400	90163274	6434	-0.0606	NEUTRAL	NA	101	Too-Many
TCGA.G4.6586	16	78711589	78909314	195	-0.0538	NEUTRAL	NA	1	WWOX
TCGA.AA.3968	16	78713066	90163274	6421	0.0051	NEUTRAL	NA	101	Too-Many
TCGA.CA.5254	16	78721760	78934514	206	0.2636	NEUTRAL	NA	1	WWOX
TCGA.AA.3864	16	78728683	78792735	33	-0.23	NEUTRAL	NA	1	WWOX
TCGA.F5.6464	16	78739256	78798235	35	-0.4274	NEUTRAL	NA	1	WWOX
TCGA.AA.3831	16	78739256	90163274	6400	-0.0079	NEUTRAL	NA	101	Too-Many
TCGA.CM.5861	16	78739256	90163274	6403	-0.0127	NEUTRAL	NA	101	Too-Many
TCGA.DM.A1HB	16	78740679	86763201	5333	0.0244	NEUTRAL	NA	49	"ADAD2,ATMIN,ATP2C2,BCO1,C16orf46,C16orf74,CDH13,CDYL2,CENPN,CMC2,CMIP,COTL1,COX4I1,CRISPLD2,DNAAF1,DYNLRB2,EMC8,FAM92B,FOXC2,FOXF1,FOXL1,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IRF8,KCNG4,KIAA0513,KLHL36,MAF,MBTPS1,MLYCD,MPHOSPH6,MTHFSD,NECAB2,OSGIN1,PKD1L2,PLCG2,SDR42E1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,WWOX,ZDHHC7"
TCGA.CA.5797	16	78753264	90163274	6394	0.26	NEUTRAL	NA	101	Too-Many
TCGA.F5.6814	16	78772952	78822568	50	-0.1526	NEUTRAL	NA	1	WWOX
TCGA.AA.3663	16	78776032	90163274	6366	-0.0103	NEUTRAL	NA	101	Too-Many
TCGA.CK.5913	16	78779011	78997055	233	-0.0548	NEUTRAL	NA	1	WWOX
TCGA.AA.3516	16	78795884	78857595	77	-0.4747	NEUTRAL	NA	1	WWOX
TCGA.AA.3864	16	78795884	90163274	6361	0.1189	NEUTRAL	NA	101	Too-Many
TCGA.F5.6464	16	78798366	90163274	6373	-0.0643	NEUTRAL	NA	101	Too-Many
TCGA.DM.A0XD	16	78798759	79081201	309	-0.0945	NEUTRAL	NA	1	WWOX
TCGA.QG.A5Z2	16	78818932	90163274	6286	-0.0904	NEUTRAL	NA	101	Too-Many
TCGA.F5.6814	16	78825221	78951762	142	-0.4885	NEUTRAL	NA	1	WWOX
TCGA.AU.6004	16	78853525	79223011	377	-0.3782	NEUTRAL	NA	1	WWOX
TCGA.AA.3845	16	78854227	90163274	6298	0.0349	NEUTRAL	NA	101	Too-Many
TCGA.AA.3516	16	78858559	90163274	6286	0.0113	NEUTRAL	NA	101	Too-Many
TCGA.A6.6653	16	78869115	81209377	1692	-0.0559	NEUTRAL	NA	10	"ATMIN,C16orf46,CDYL2,CENPN,CMC2,DYNLRB2,GCSH,MAF,PKD1L2,WWOX"
TCGA.A6.3809	16	78875352	90163274	5823	-0.0683	NEUTRAL	NA	101	Too-Many
TCGA.A6.6781	16	78885181	90163274	5792	-0.0517	NEUTRAL	NA	101	Too-Many
TCGA.A6.5656	16	78891710	90163274	6218	-0.008	NEUTRAL	NA	101	Too-Many
TCGA.AG.4015	16	78902323	79100558	196	-0.5139	NEUTRAL	NA	1	WWOX
TCGA.G4.6586	16	78911832	85927078	4640	0.3554	NEUTRAL	NA	44	"ADAD2,ATMIN,ATP2C2,BCO1,C16orf46,C16orf74,CDH13,CDYL2,CENPN,CMC2,CMIP,COTL1,COX4I1,CRISPLD2,DNAAF1,DYNLRB2,EMC8,FAM92B,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,KCNG4,KIAA0513,KLHL36,MAF,MBTPS1,MLYCD,MPHOSPH6,NECAB2,OSGIN1,PKD1L2,PLCG2,SDR42E1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,WWOX,ZDHHC7"
TCGA.AZ.4615	16	78911832	90163274	6223	-0.0276	NEUTRAL	NA	101	Too-Many
TCGA.A6.6782	16	78923643	79128044	206	-0.4013	NEUTRAL	NA	1	WWOX
TCGA.NH.A5IV	16	78931678	90163274	6204	0.0644	NEUTRAL	NA	101	Too-Many
TCGA.AA.3982	16	78932156	78934398	5	-0.293	NEUTRAL	NA	1	WWOX
TCGA.D5.6927	16	78935729	78980428	39	0.0327	NEUTRAL	NA	1	WWOX
TCGA.CA.5254	16	78935729	79215084	270	-0.0478	NEUTRAL	NA	1	WWOX
TCGA.G4.6628	16	78936105	79089884	158	-0.4864	NEUTRAL	NA	1	WWOX
TCGA.AD.6964	16	78940746	90163274	6197	-0.0687	NEUTRAL	NA	101	Too-Many
TCGA.AA.3664	16	78950253	90163274	6204	-0.0428	NEUTRAL	NA	101	Too-Many
TCGA.EI.6507	16	78950253	90163274	6205	-0.0207	NEUTRAL	NA	101	Too-Many
TCGA.F5.6814	16	78960322	79053911	97	-0.4847	NEUTRAL	NA	1	WWOX
TCGA.D5.6927	16	78983478	79147466	157	-0.4203	NEUTRAL	NA	1	WWOX
TCGA.AA.3511	16	78983478	90163274	6157	-0.0309	NEUTRAL	NA	101	Too-Many
TCGA.DM.A1D8	16	78991042	90163274	6142	0.2728	NEUTRAL	NA	101	Too-Many
TCGA.AA.3982	16	78992791	78997055	3	-0.4337	NEUTRAL	NA	1	WWOX
TCGA.AA.3518	16	79002430	79114374	114	0.0208	NEUTRAL	NA	1	WWOX
TCGA.AA.3982	16	79002430	81104708	1482	0.2441	NEUTRAL	NA	8	"ATMIN,C16orf46,CDYL2,CENPN,CMC2,DYNLRB2,MAF,WWOX"
TCGA.A6.6140	16	79018644	79275254	239	-0.2678	NEUTRAL	NA	1	WWOX
TCGA.AY.5543	16	79018644	90148448	6084	-0.0511	NEUTRAL	NA	101	Too-Many
TCGA.D5.6929	16	79020531	79088977	75	-0.1167	NEUTRAL	NA	1	WWOX
TCGA.CK.5913	16	79020779	90163274	6119	-0.0039	NEUTRAL	NA	101	Too-Many
TCGA.F4.6808	16	79039328	79232445	195	-0.2817	NEUTRAL	NA	1	WWOX
TCGA.F5.6814	16	79056755	90163274	6079	-0.0943	NEUTRAL	NA	101	Too-Many
TCGA.SS.A7HO	16	79063672	90163274	6076	-0.0342	NEUTRAL	NA	101	Too-Many
TCGA.DM.A0XD	16	79081740	79167369	68	-0.5034	NEUTRAL	NA	1	WWOX
TCGA.D5.6929	16	79089811	90163274	6034	0.2338	NEUTRAL	NA	101	Too-Many
TCGA.G4.6628	16	79093316	90163274	6037	-0.0235	NEUTRAL	NA	101	Too-Many
TCGA.AG.4015	16	79102112	90163274	6028	-0.0057	NEUTRAL	NA	101	Too-Many
TCGA.AH.6897	16	79102112	90163274	6029	-0.006	NEUTRAL	NA	101	Too-Many
TCGA.AA.3518	16	79114483	79189839	67	-0.3012	NEUTRAL	NA	1	WWOX
TCGA.AG.3883	16	79130573	81209514	1432	-0.3385	NEUTRAL	NA	10	"ATMIN,C16orf46,CDYL2,CENPN,CMC2,DYNLRB2,GCSH,MAF,PKD1L2,WWOX"
TCGA.A6.6782	16	79130573	90163274	5999	0.0664	NEUTRAL	NA	101	Too-Many
TCGA.EI.6508	16	79143982	83654955	3237	-0.0224	NEUTRAL	NA	18	"ATMIN,BCO1,C16orf46,CDH13,CDYL2,CENPN,CMC2,CMIP,DYNLRB2,GAN,GCSH,HSD17B2,MAF,MPHOSPH6,PKD1L2,PLCG2,SDR42E1,WWOX"
TCGA.D5.6927	16	79148864	90163274	5997	0.0039	NEUTRAL	NA	101	Too-Many
TCGA.AA.3492	16	79156221	90163274	5999	0.0116	NEUTRAL	NA	101	Too-Many
TCGA.DM.A0X9	16	79159267	90163274	5993	-0.0363	NEUTRAL	NA	101	Too-Many
TCGA.DM.A0XD	16	79170437	90163274	5968	-0.0282	NEUTRAL	NA	101	Too-Many
TCGA.AA.3679	16	79185392	79268885	79	-0.0235	NEUTRAL	NA	1	WWOX
TCGA.AA.3518	16	79190897	90163274	5941	0.0212	NEUTRAL	NA	101	Too-Many
TCGA.CA.5254	16	79215503	90163274	5922	0.2675	NEUTRAL	NA	101	Too-Many
TCGA.AU.6004	16	79223135	80334927	791	-0.034	NEUTRAL	NA	2	"MAF,WWOX"
TCGA.AZ.4614	16	79227942	82924951	2491	-0.1362	NEUTRAL	NA	18	"ATMIN,BCO1,C16orf46,CDH13,CDYL2,CENPN,CMC2,CMIP,DYNLRB2,GAN,GCSH,HSD17B2,MAF,MPHOSPH6,PKD1L2,PLCG2,SDR42E1,WWOX"
TCGA.AG.A026	16	79227942	90163274	5917	-0.0599	NEUTRAL	NA	101	Too-Many
TCGA.AF.3913	16	79230314	80650804	1027	0.2328	NEUTRAL	NA	4	"CDYL2,DYNLRB2,MAF,WWOX"
TCGA.F4.6808	16	79233388	90163274	5909	-0.0254	NEUTRAL	NA	101	Too-Many
TCGA.AA.3679	16	79269858	90163274	5900	0.3766	NEUTRAL	NA	100	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPBD1,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAF,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.A6.6140	16	79281580	90163274	5892	0.1974	NEUTRAL	NA	100	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPBD1,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAF,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AM.5820	16	79566334	79580886	19	-0.459	NEUTRAL	NA	0	None
TCGA.AM.5820	16	79582675	81194527	1071	0.0393	NEUTRAL	NA	9	"ATMIN,C16orf46,CDYL2,CENPN,CMC2,DYNLRB2,GCSH,MAF,PKD1L2"
TCGA.AA.3941	16	79608617	79612120	8	-0.4372	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	79645092	79758985	33	-0.3576	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	16	79761780	83045885	227	0.1576	NEUTRAL	NA	16	"ATMIN,BCO1,C16orf46,CDH13,CDYL2,CENPN,CMC2,CMIP,DYNLRB2,GAN,GCSH,HSD17B2,MPHOSPH6,PKD1L2,PLCG2,SDR42E1"
TCGA.AA.3941	16	79762066	79993935	174	0.272	NEUTRAL	NA	0	None
TCGA.AY.4071	16	79793765	90163274	5485	-0.1084	NEUTRAL	NA	99	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPBD1,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3696	16	79885100	90163274	5461	-0.0419	NEUTRAL	NA	99	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPBD1,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3941	16	80069527	80329565	169	0.2521	NEUTRAL	NA	0	None
TCGA.AU.6004	16	80337632	90163274	5109	-0.1012	NEUTRAL	NA	99	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPBD1,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3941	16	80433264	80572963	80	0.3144	NEUTRAL	NA	0	None
TCGA.AA.3556	16	80612058	85923201	3319	-0.0308	NEUTRAL	NA	41	"ADAD2,ATMIN,ATP2C2,BCO1,C16orf46,C16orf74,CDH13,CDYL2,CENPN,CMC2,CMIP,COTL1,COX4I1,CRISPLD2,DNAAF1,EMC8,FAM92B,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,KCNG4,KIAA0513,KLHL36,MBTPS1,MLYCD,MPHOSPH6,NECAB2,OSGIN1,PKD1L2,PLCG2,SDR42E1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.AF.3913	16	80655558	83782439	2231	0.2684	NEUTRAL	NA	15	"ATMIN,BCO1,C16orf46,CDH13,CDYL2,CENPN,CMC2,CMIP,GAN,GCSH,HSD17B2,MPHOSPH6,PKD1L2,PLCG2,SDR42E1"
TCGA.AG.3909.01A	16	81030882	81074913	13	-0.4497	NEUTRAL	NA	3	"ATMIN,CENPN,CMC2"
TCGA.AG.4009.01A	16	81087590	83816841	140	0.077	NEUTRAL	NA	11	"BCO1,C16orf46,CDH13,CMIP,GAN,GCSH,HSD17B2,MPHOSPH6,PKD1L2,PLCG2,SDR42E1"
TCGA.AG.A008.01A	16	81087590	90142216	631	0.2082	NEUTRAL	NA	94	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.CK.5914.01A	16	81094759	81095349	3	0.3445	NEUTRAL	NA	1	C16orf46
TCGA.AG.A00C.01A	16	81094759	81097344	4	-0.0741	NEUTRAL	NA	1	C16orf46
TCGA.AG.3906.01A	16	81094759	81694421	74	0.1059	NEUTRAL	NA	6	"BCO1,C16orf46,CMIP,GAN,GCSH,PKD1L2"
TCGA.T9.A92H	16	81104964	82230391	679	0.2396	NEUTRAL	NA	10	"BCO1,C16orf46,CMIP,GAN,GCSH,HSD17B2,MPHOSPH6,PKD1L2,PLCG2,SDR42E1"
TCGA.AG.3909.01A	16	81116449	81134691	5	-0.3673	NEUTRAL	NA	2	"GCSH,PKD1L2"
TCGA.A6.3808.01A	16	81134691	83940555	148	0.1609	NEUTRAL	NA	11	"BCO1,CDH13,CMIP,GAN,HSBP1,HSD17B2,MLYCD,MPHOSPH6,PKD1L2,PLCG2,SDR42E1"
TCGA.F5.6465	16	81140525	81949696	466	-0.0765	NEUTRAL	NA	5	"BCO1,CMIP,GAN,PKD1L2,PLCG2"
TCGA.AA.3509.01A	16	81145746	90142216	827	-0.1697	NEUTRAL	NA	92	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,BCO1,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.A00C.01A	16	81150926	81528989	59	-0.1528	NEUTRAL	NA	4	"BCO1,CMIP,GAN,PKD1L2"
TCGA.AG.A015.01A	16	81164017	81194261	12	-0.2602	NEUTRAL	NA	1	PKD1L2
TCGA.AG.A015.01A	16	81198199	90142216	546	0.3298	NEUTRAL	NA	92	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,BCO1,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AM.5820	16	81208821	81475931	160	-0.0861	NEUTRAL	NA	3	"BCO1,GAN,PKD1L2"
TCGA.A6.6653	16	81209514	81238817	26	-0.4672	NEUTRAL	NA	1	PKD1L2
TCGA.AG.3883	16	81211547	90163274	4589	-0.2714	NEUTRAL	NA	92	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,BCO1,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.A6.6653	16	81238871	87001062	3794	-0.0412	NEUTRAL	NA	40	"ADAD2,ATP2C2,BCO1,C16orf74,CDH13,CMIP,COTL1,COX4I1,CRISPLD2,DNAAF1,EMC8,FAM92B,FOXC2,FOXF1,FOXL1,GAN,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IRF8,KCNG4,KIAA0513,KLHL36,MBTPS1,MLYCD,MPHOSPH6,MTHFSD,NECAB2,OSGIN1,PKD1L2,PLCG2,SDR42E1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.AA.A00N.01A	16	81293229	81528989	21	0.2624	NEUTRAL	NA	3	"BCO1,CMIP,GAN"
TCGA.CK.5914.01A	16	81385136	81925027	41	-0.2018	NEUTRAL	NA	3	"CMIP,GAN,PLCG2"
TCGA.AA.3982	16	81392786	81396037	3	-0.4916	NEUTRAL	NA	1	GAN
TCGA.AM.5820	16	81498295	81683471	106	0.2443	NEUTRAL	NA	1	CMIP
TCGA.AG.A01Y	16	81662446	90163274	4310	-0.0878	NEUTRAL	NA	89	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.3906.01A	16	81697824	81736152	10	-0.4918	NEUTRAL	NA	1	CMIP
TCGA.AG.A00C.01A	16	81726677	83828542	64	-0.1285	NEUTRAL	NA	6	"CDH13,CMIP,HSD17B2,MPHOSPH6,PLCG2,SDR42E1"
TCGA.AG.3906.01A	16	81740555	83842873	61	0.0086	NEUTRAL	NA	7	"CDH13,CMIP,HSBP1,HSD17B2,MPHOSPH6,PLCG2,SDR42E1"
TCGA.AM.5820	16	81741462	83918876	1749	0.0624	NEUTRAL	NA	7	"CDH13,CMIP,HSBP1,HSD17B2,MPHOSPH6,PLCG2,SDR42E1"
TCGA.AF.6672	16	81949284	83980028	1661	-0.0264	NEUTRAL	NA	7	"CDH13,HSBP1,HSD17B2,MLYCD,MPHOSPH6,PLCG2,SDR42E1"
TCGA.F5.6465	16	81955297	85580917	2471	0.3334	NEUTRAL	NA	26	"ADAD2,ATP2C2,CDH13,COTL1,CRISPLD2,DNAAF1,FAM92B,HSBP1,HSD17B2,HSDL1,KCNG4,KIAA0513,KLHL36,MBTPS1,MLYCD,MPHOSPH6,NECAB2,OSGIN1,PLCG2,SDR42E1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.AA.3982	16	81958172	82349547	266	0.2617	NEUTRAL	NA	4	"HSD17B2,MPHOSPH6,PLCG2,SDR42E1"
TCGA.AA.3844	16	81975064	82349547	249	0.3323	NEUTRAL	NA	4	"HSD17B2,MPHOSPH6,PLCG2,SDR42E1"
TCGA.AA.3811	16	81977184	83765356	1474	0.0814	NEUTRAL	NA	5	"CDH13,HSD17B2,MPHOSPH6,PLCG2,SDR42E1"
TCGA.AA.3941	16	82054161	82119099	38	0.0922	NEUTRAL	NA	1	HSD17B2
TCGA.AG.3909.01A	16	82182339	82197639	4	-0.0132	NEUTRAL	NA	1	MPHOSPH6
TCGA.T9.A92H	16	82230814	86774391	3091	-0.3504	NEUTRAL	NA	32	"ADAD2,ATP2C2,C16orf74,CDH13,COTL1,COX4I1,CRISPLD2,DNAAF1,EMC8,FAM92B,FOXC2,FOXF1,FOXL1,GINS2,GSE1,HSBP1,HSDL1,IRF8,KCNG4,KIAA0513,KLHL36,MBTPS1,MLYCD,MTHFSD,NECAB2,OSGIN1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.AA.3941	16	82267213	82276548	12	-0.388	NEUTRAL	NA	0	None
TCGA.AA.3982	16	82371089	83424039	929	0.2067	NEUTRAL	NA	1	CDH13
TCGA.AA.3844	16	82371089	83822304	1290	0.303	NEUTRAL	NA	1	CDH13
TCGA.AA.3872	16	82548076	82795642	243	0.1935	NEUTRAL	NA	1	CDH13
TCGA.AA.3848	16	82837960	83170416	259	-0.0543	NEUTRAL	NA	1	CDH13
TCGA.AY.6197	16	82840302	90163274	3387	-0.0479	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.A01W.01A	16	83077752	85994004	128	0.1901	NEUTRAL	NA	28	"ADAD2,ATP2C2,C16orf74,CDH13,COTL1,COX4I1,CRISPLD2,DNAAF1,EMC8,FAM92B,GINS2,GSE1,HSBP1,HSDL1,IRF8,KCNG4,KIAA0513,KLHL36,MBTPS1,MLYCD,NECAB2,OSGIN1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.A6.5665	16	83177331	83851072	625	-0.1737	NEUTRAL	NA	2	"CDH13,HSBP1"
TCGA.AG.3598	16	83177331	90163274	3211	-0.0676	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.A6.2672	16	83179338	83926345	675	-0.1153	NEUTRAL	NA	2	"CDH13,HSBP1"
TCGA.AA.3848	16	83180144	90163274	3214	0.0214	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3979	16	83614471	90163274	2795	-0.0071	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.DM.A1D4	16	83620633	83621092	4	0.2653	NEUTRAL	NA	1	CDH13
TCGA.DM.A1D4	16	83745974	90163274	2702	-0.0074	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3811	16	83766743	90163274	2676	0.3774	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A02Y	16	83771495	90148448	2661	0.0124	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.EI.6508	16	83774853	89481273	2537	-0.0574	NEUTRAL	NA	64	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDT1,COTL1,COX4I1,CRISPLD2,CTU2,CYBA,DNAAF1,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,RNF166,SLC22A31,SLC38A8,SLC7A5,SNAI3,TAF1C,TLDC1,TRAPPC2L,USP10,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF469,ZNF778"
TCGA.AF.3913	16	83782949	90163274	2634	0.3247	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3524	16	83812346	90163274	2608	-0.0223	NEUTRAL	NA	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.4009.01A	16	83828542	84014404	15	-0.354	NEUTRAL	NA	5	"CDH13,HSBP1,MLYCD,NECAB2,OSGIN1"
TCGA.CK.5914.01A	16	83842241	84012002	15	-0.3204	NEUTRAL	NA	4	"HSBP1,MLYCD,NECAB2,OSGIN1"
TCGA.DM.A28H	16	83851072	90163274	2588	0.0211	NEUTRAL	NA	82	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.G4.6295	16	83892006	90163274	2553	-0.014	NEUTRAL	NA	82	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3697	16	83910505	90097994	2510	-0.2735	NEUTRAL	NA	81	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.3906.01A	16	83940555	84050695	21	0.3734	NEUTRAL	NA	4	"MLYCD,NECAB2,OSGIN1,SLC38A8"
TCGA.AG.A00C.01A	16	83941709	90142216	476	0.1565	NEUTRAL	NA	82	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A00N.01A	16	83948560	84129165	49	0.2199	NEUTRAL	NA	5	"MBTPS1,MLYCD,NECAB2,OSGIN1,SLC38A8"
TCGA.AF.6672	16	83989849	87409265	1959	-0.4392	NEUTRAL	NA	31	"ADAD2,ATP2C2,C16orf74,C16orf95,COTL1,COX4I1,CRISPLD2,DNAAF1,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GINS2,GSE1,HSDL1,IRF8,KCNG4,KIAA0513,KLHL36,MBTPS1,MTHFSD,NECAB2,OSGIN1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.A6.3808.01A	16	84005671	84129165	41	0.2249	NEUTRAL	NA	3	"MBTPS1,NECAB2,SLC38A8"
TCGA.AA.A01Q.01A	16	84012002	84651386	99	-0.1867	NEUTRAL	NA	12	"ADAD2,ATP2C2,COTL1,DNAAF1,HSDL1,KCNG4,MBTPS1,NECAB2,SLC38A8,TAF1C,TLDC1,WFDC1"
TCGA.CK.5914.01A	16	84014404	84135177	41	0.3654	NEUTRAL	NA	3	"MBTPS1,NECAB2,SLC38A8"
TCGA.AG.4009.01A	16	84024048	84030771	4	0.1309	NEUTRAL	NA	1	NECAB2
TCGA.AA.A00Q.01A	16	84027868	84043345	8	0.0521	NEUTRAL	NA	2	"NECAB2,SLC38A8"
TCGA.AA.A010.01A	16	84031761	84063031	10	0.0402	NEUTRAL	NA	2	"NECAB2,SLC38A8"
TCGA.AG.3906.01A	16	84056362	84623669	93	0.0365	NEUTRAL	NA	11	"ADAD2,ATP2C2,COTL1,DNAAF1,HSDL1,KCNG4,MBTPS1,SLC38A8,TAF1C,TLDC1,WFDC1"
TCGA.AM.5820	16	84087137	84716498	372	0.2045	NEUTRAL	NA	11	"ADAD2,ATP2C2,COTL1,DNAAF1,HSDL1,KCNG4,KLHL36,MBTPS1,TAF1C,TLDC1,WFDC1"
TCGA.AG.4009.01A	16	84088007	84135177	22	-0.0786	NEUTRAL	NA	1	MBTPS1
TCGA.AA.A010.01A	16	84124417	84178996	12	-0.494	NEUTRAL	NA	3	"DNAAF1,HSDL1,MBTPS1"
TCGA.AA.A02F.01A	16	84132639	90142216	288	-0.3849	NEUTRAL	NA	78	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.3909.01A	16	84158185	84230214	29	-0.3214	NEUTRAL	NA	4	"ADAD2,DNAAF1,HSDL1,TAF1C"
TCGA.CK.5914.01A	16	84158185	84230214	31	-0.3513	NEUTRAL	NA	4	"ADAD2,DNAAF1,HSDL1,TAF1C"
TCGA.AG.4009.01A	16	84193231	84360421	28	-0.2739	NEUTRAL	NA	5	"ADAD2,DNAAF1,KCNG4,TAF1C,WFDC1"
TCGA.AA.A010.01A	16	84203437	84211298	5	-0.4153	NEUTRAL	NA	1	DNAAF1
TCGA.AA.A00N.01A	16	84228466	85112471	91	0.1512	NEUTRAL	NA	11	"ADAD2,ATP2C2,COTL1,CRISPLD2,KCNG4,KIAA0513,KLHL36,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.CK.5914.01A	16	84255801	85111024	84	0.1202	NEUTRAL	NA	10	"ATP2C2,COTL1,CRISPLD2,KCNG4,KIAA0513,KLHL36,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.A6.3808.01A	16	84270334	85145887	98	0.0373	NEUTRAL	NA	11	"ATP2C2,COTL1,CRISPLD2,FAM92B,KCNG4,KIAA0513,KLHL36,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.AG.4009.01A	16	84432063	84623669	29	0.2344	NEUTRAL	NA	3	"ATP2C2,COTL1,TLDC1"
TCGA.AA.3967.01A	16	84482088	90142216	457	0.162	NEUTRAL	NA	71	"ACSF3,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,IL17C,IRF8,JPH3,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.3909.01A	16	84492674	84531509	11	-0.2474	NEUTRAL	NA	2	"ATP2C2,TLDC1"
TCGA.AG.3909.01A	16	84600404	84888283	25	0.3423	NEUTRAL	NA	4	"COTL1,CRISPLD2,KLHL36,USP10"
TCGA.AA.A01K.01A	16	84684414	90142216	287	-0.4765	NEUTRAL	NA	68	"ACSF3,ANKRD11,APRT,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,IL17C,IRF8,JPH3,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,USP10,VPS9D1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AM.5820	16	84716713	84784289	41	-0.221	NEUTRAL	NA	1	USP10
TCGA.AG.4009.01A	16	84766979	85694725	57	0.227	NEUTRAL	NA	6	"CRISPLD2,FAM92B,GSE1,KIAA0513,USP10,ZDHHC7"
TCGA.AG.3906.01A	16	84766979	85705963	61	-0.0456	NEUTRAL	NA	6	"CRISPLD2,FAM92B,GSE1,KIAA0513,USP10,ZDHHC7"
TCGA.AM.5820	16	84785189	85127567	177	0.216	NEUTRAL	NA	4	"CRISPLD2,KIAA0513,USP10,ZDHHC7"
TCGA.CM.6168	16	84912878	88330512	1662	-0.0594	NEUTRAL	NA	23	"BANP,C16orf74,C16orf95,CA5A,COX4I1,CRISPLD2,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GINS2,GSE1,IRF8,JPH3,KIAA0513,KLHDC4,MAP1LC3B,MTHFSD,SLC7A5,ZCCHC14,ZDHHC7"
TCGA.AA.A010.01A	16	85010671	85694725	34	0.1009	NEUTRAL	NA	4	"FAM92B,GSE1,KIAA0513,ZDHHC7"
TCGA.AG.3909.01A	16	85105377	87393835	70	-0.2128	NEUTRAL	NA	14	"C16orf74,C16orf95,COX4I1,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GINS2,GSE1,IRF8,KIAA0513,MTHFSD"
TCGA.CK.5914.01A	16	85111940	89833501	410	-0.3623	NEUTRAL	NA	55	"ACSF3,ANKRD11,APRT,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CHMP1A,COX4I1,CPNE7,CTU2,CYBA,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GINS2,GSE1,IL17C,IRF8,JPH3,KIAA0513,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MTHFSD,MVD,PABPN1L,PIEZO1,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,TRAPPC2L,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A01Q.01A	16	85143795	85696575	9	0.2954	NEUTRAL	NA	2	"FAM92B,GSE1"
TCGA.F5.6465	16	85594908	85711859	25	-0.0901	NEUTRAL	NA	2	"GINS2,GSE1"
TCGA.AG.4009.01A	16	85696575	88747463	128	-0.2285	NEUTRAL	NA	26	"BANP,C16orf74,C16orf95,CA5A,COX4I1,CYBA,EMC8,FBXO31,FOXC2,FOXF1,FOXL1,GINS2,GSE1,IL17C,IRF8,JPH3,KLHDC4,MAP1LC3B,MTHFSD,MVD,SLC7A5,SNAI3,ZC3H18,ZCCHC14,ZFPM1,ZNF469"
TCGA.AM.5820	16	85696617	87471872	1158	0.245	NEUTRAL	NA	14	"C16orf74,C16orf95,COX4I1,EMC8,FBXO31,FOXC2,FOXF1,FOXL1,GINS2,GSE1,IRF8,MAP1LC3B,MTHFSD,ZCCHC14"
TCGA.AA.A01Q.01A	16	85696968	85712108	8	-0.128	NEUTRAL	NA	2	"GINS2,GSE1"
TCGA.A6.3808.01A	16	85705963	86580114	33	0.0679	NEUTRAL	NA	8	"C16orf74,COX4I1,EMC8,FOXF1,GINS2,GSE1,IRF8,MTHFSD"
TCGA.F5.6465	16	85712104	89898763	1636	0.2912	NEUTRAL	NA	53	"ACSF3,ANKRD11,APRT,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CHMP1A,COX4I1,CPNE7,CTU2,CYBA,DPEP1,EMC8,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GINS2,IL17C,IRF8,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MTHFSD,MVD,PABPN1L,PIEZO1,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TRAPPC2L,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.3906.01A	16	85768723	88713104	110	0.0401	NEUTRAL	NA	22	"BANP,C16orf74,C16orf95,CA5A,COX4I1,CYBA,EMC8,FBXO31,FOXC2,FOXF1,FOXL1,IL17C,IRF8,JPH3,KLHDC4,MAP1LC3B,MTHFSD,SLC7A5,ZC3H18,ZCCHC14,ZFPM1,ZNF469"
TCGA.AA.3556	16	85935796	90163274	1587	-0.056	NEUTRAL	NA	57	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,IL17C,IRF8,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AZ.4681	16	85935796	90163274	1591	0.0588	NEUTRAL	NA	57	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,IL17C,IRF8,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A03F	16	85936977	90163274	1591	0.0046	NEUTRAL	NA	57	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,IL17C,IRF8,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.G4.6586	16	85936977	90163274	1592	0.3056	NEUTRAL	NA	57	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,IL17C,IRF8,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.DY.A1DF	16	85978486	86910193	735	0.288	NEUTRAL	NA	4	"FOXC2,FOXF1,FOXL1,MTHFSD"
TCGA.AG.A01W.01A	16	86459946	86572093	10	-0.1821	NEUTRAL	NA	2	"FOXF1,MTHFSD"
TCGA.AA.A00L.01A	16	86544124	86612323	5	-0.2694	NEUTRAL	NA	4	"FOXC2,FOXF1,FOXL1,MTHFSD"
TCGA.DM.A1HB	16	86771844	90163274	850	0.0634	NEUTRAL	NA	52	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,GALNS,GAS8,IL17C,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.EI.6509	16	86774323	90163274	892	-0.0627	NEUTRAL	NA	52	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,GALNS,GAS8,IL17C,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.T9.A92H	16	86783645	88023916	520	0.2054	NEUTRAL	NA	9	"BANP,C16orf95,CA5A,FBXO31,JPH3,KLHDC4,MAP1LC3B,SLC7A5,ZCCHC14"
TCGA.AA.3667	16	86788807	90163274	885	0.0558	NEUTRAL	NA	52	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,GALNS,GAS8,IL17C,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.DY.A1DF	16	86914741	88043874	449	-0.0278	NEUTRAL	NA	9	"BANP,C16orf95,CA5A,FBXO31,JPH3,KLHDC4,MAP1LC3B,SLC7A5,ZCCHC14"
TCGA.A6.6653	16	87040506	90163274	758	-0.0671	NEUTRAL	NA	52	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,GALNS,GAS8,IL17C,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.A01W.01A	16	87127046	87241891	26	0.239	NEUTRAL	NA	0	None
TCGA.AF.6672	16	87409287	90163274	552	0.0178	NEUTRAL	NA	51	"ACSF3,ANKRD11,APRT,BANP,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,GALNS,GAS8,IL17C,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AM.5820	16	87481031	87627783	43	0.0944	NEUTRAL	NA	1	ZCCHC14
TCGA.AG.3909.01A	16	87525243	88898358	86	0.1361	NEUTRAL	NA	19	"APRT,BANP,CA5A,CDT1,CTU2,CYBA,GALNS,IL17C,JPH3,KLHDC4,MVD,PIEZO1,RNF166,SLC7A5,SNAI3,ZC3H18,ZCCHC14,ZFPM1,ZNF469"
TCGA.AM.5820	16	87638854	87852974	83	0.3721	NEUTRAL	NA	2	"JPH3,KLHDC4"
TCGA.AG.A01W.01A	16	87777437	88150749	43	0.292	NEUTRAL	NA	4	"BANP,CA5A,KLHDC4,SLC7A5"
TCGA.AA.A01Q.01A	16	87902463	87935468	4	0.1596	NEUTRAL	NA	2	"CA5A,SLC7A5"
TCGA.T9.A92H	16	88028129	88127684	33	-0.2289	NEUTRAL	NA	1	BANP
TCGA.AA.3930.01A	16	88037883	90142216	309	-0.1896	NEUTRAL	NA	44	"ACSF3,ANKRD11,APRT,BANP,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,IL17C,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A01Q.01A	16	88039664	88652949	20	0.1845	NEUTRAL	NA	4	"BANP,ZC3H18,ZFPM1,ZNF469"
TCGA.AH.6643	16	88043874	90163274	365	-0.3495	NEUTRAL	NA	44	"ACSF3,ANKRD11,APRT,BANP,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,IL17C,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3854	16	88068011	88255553	37	-0.3741	NEUTRAL	NA	1	BANP
TCGA.DY.A1DF	16	88068011	89375238	209	-0.0873	NEUTRAL	NA	23	"ACSF3,ANKRD11,APRT,BANP,CBFA2T3,CDH15,CDT1,CTU2,CYBA,GALNS,IL17C,LOC100129697,MVD,PABPN1L,PIEZO1,RNF166,SLC22A31,SNAI3,TRAPPC2L,ZC3H18,ZFPM1,ZNF469,ZNF778"
TCGA.AA.3841	16	88081883	88116482	11	-0.3124	NEUTRAL	NA	1	BANP
TCGA.AA.3973	16	88093529	90163274	351	0.1686	NEUTRAL	NA	44	"ACSF3,ANKRD11,APRT,BANP,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,IL17C,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A010.01A	16	88098869	88493837	4	0.0856	NEUTRAL	NA	1	BANP
TCGA.AA.3841	16	88116558	90163274	344	0.3331	NEUTRAL	NA	43	"ACSF3,ANKRD11,APRT,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,IL17C,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.T9.A92H	16	88136667	88171362	6	0.1953	NEUTRAL	NA	0	None
TCGA.T9.A92H	16	88255553	90163274	327	0.2655	NEUTRAL	NA	43	"ACSF3,ANKRD11,APRT,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,IL17C,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3854	16	88261615	90163274	326	0.1539	NEUTRAL	NA	43	"ACSF3,ANKRD11,APRT,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,IL17C,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.A01W.01A	16	88316972	88481496	58	0.1295	NEUTRAL	NA	0	None
TCGA.CM.6168	16	88331639	90163274	310	-0.5122	NEUTRAL	NA	43	"ACSF3,ANKRD11,APRT,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,IL17C,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AG.A01W.01A	16	88574112	88578385	3	-0.4888	NEUTRAL	NA	1	ZFPM1
TCGA.AG.A01W.01A	16	88584740	88637059	18	0.2022	NEUTRAL	NA	2	"ZC3H18,ZFPM1"
TCGA.AM.5820	16	88627516	88773737	30	0.29	NEUTRAL	NA	7	"CTU2,CYBA,IL17C,MVD,RNF166,SNAI3,ZC3H18"
TCGA.AG.A01W.01A	16	88652244	88669706	10	-0.3731	NEUTRAL	NA	1	ZC3H18
TCGA.AA.A010.01A	16	88677649	88747463	31	-0.1241	NEUTRAL	NA	5	"CYBA,IL17C,MVD,SNAI3,ZC3H18"
TCGA.AA.A01Q.01A	16	88677649	88876794	47	0.1332	NEUTRAL	NA	10	"APRT,CDT1,CTU2,CYBA,IL17C,MVD,PIEZO1,RNF166,SNAI3,ZC3H18"
TCGA.CM.5349	16	88712318	90163274	263	-0.1084	NEUTRAL	NA	39	"ACSF3,ANKRD11,APRT,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZNF276,ZNF778"
TCGA.AG.3906.01A	16	88721048	89257727	39	-0.3909	NEUTRAL	NA	14	"ACSF3,APRT,CBFA2T3,CDH15,CDT1,CTU2,GALNS,LOC100129697,MVD,PABPN1L,PIEZO1,RNF166,SNAI3,TRAPPC2L"
TCGA.AA.A01Q.01A	16	88880801	89645217	73	-0.3814	NEUTRAL	NA	14	"ACSF3,ANKRD11,CBFA2T3,CDH15,CPNE7,GALNS,LOC100129697,LOC100287036,PABPN1L,RPL13,SLC22A31,SPG7,TRAPPC2L,ZNF778"
TCGA.AG.3611.01A	16	88893081	89168965	17	-0.17	NEUTRAL	NA	6	"ACSF3,CBFA2T3,GALNS,LOC100129697,PABPN1L,TRAPPC2L"
TCGA.AA.A010.01A	16	88893081	89245792	42	-0.5017	NEUTRAL	NA	7	"ACSF3,CBFA2T3,CDH15,GALNS,LOC100129697,PABPN1L,TRAPPC2L"
TCGA.AG.3909.01A	16	88901570	89603124	50	-0.4845	NEUTRAL	NA	12	"ACSF3,ANKRD11,CBFA2T3,CDH15,GALNS,LOC100129697,LOC100287036,PABPN1L,SLC22A31,SPG7,TRAPPC2L,ZNF778"
TCGA.AG.4009.01A	16	88902112	89383284	42	-0.2454	NEUTRAL	NA	10	"ACSF3,ANKRD11,CBFA2T3,CDH15,GALNS,LOC100129697,PABPN1L,SLC22A31,TRAPPC2L,ZNF778"
TCGA.AY.A71X	16	88904520	90163274	229	-0.1412	NEUTRAL	NA	31	"ACSF3,ANKRD11,CBFA2T3,CDH15,CDK10,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,LOC100129697,LOC100287036,MC1R,PABPN1L,PRDM7,RPL13,SLC22A31,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZNF276,ZNF778"
TCGA.AG.3611.01A	16	89178462	90128319	164	0.1795	NEUTRAL	NA	26	"ACSF3,ANKRD11,CDH15,CDK10,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GAS8,LOC100287036,MC1R,PRDM7,RPL13,SLC22A31,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276,ZNF778"
TCGA.AM.5820	16	89270485	89339498	19	0.112	NEUTRAL	NA	2	"ANKRD11,ZNF778"
TCGA.AG.3906.01A	16	89288464	90142216	150	0.1393	NEUTRAL	NA	23	"ANKRD11,CDK10,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GAS8,LOC100287036,MC1R,PRDM7,RPL13,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276,ZNF778"
TCGA.AA.3862.01A	16	89289524	90142216	177	-0.0368	NEUTRAL	NA	23	"ANKRD11,CDK10,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GAS8,LOC100287036,MC1R,PRDM7,RPL13,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276,ZNF778"
TCGA.AM.5820	16	89376469	89630211	56	0.2583	NEUTRAL	NA	4	"ANKRD11,LOC100287036,RPL13,SPG7"
TCGA.AA.3695	16	89427548	89433469	7	-0.4087	NEUTRAL	NA	1	ANKRD11
TCGA.AA.3695	16	89441122	90163274	137	0.1641	NEUTRAL	NA	21	"ANKRD11,CDK10,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GAS8,MC1R,PRDM7,RPL13,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276"
TCGA.DY.A1DF	16	89484133	90163274	131	-0.0551	NEUTRAL	NA	21	"ANKRD11,CDK10,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GAS8,MC1R,PRDM7,RPL13,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276"
TCGA.BM.6198	16	89541242	90163274	123	0.00925	NEUTRAL	NA	21	"ANKRD11,CDK10,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GAS8,MC1R,PRDM7,RPL13,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276"
TCGA.AG.3909.01A	16	89611005	89858821	76	0.0474	NEUTRAL	NA	11	"CDK10,CHMP1A,CPNE7,DPEP1,FANCA,RPL13,SPATA2L,SPATA33,SPG7,VPS9D1,ZNF276"
TCGA.AG.3891.01A	16	89645217	89735682	13	-0.2709	NEUTRAL	NA	4	"CHMP1A,CPNE7,DPEP1,SPATA33"
TCGA.EI.6508	16	89683837	90163274	87	-0.0338	NEUTRAL	NA	17	"CDK10,CENPBD1,CHMP1A,DBNDD1,DEF8,DPEP1,FANCA,GAS8,MC1R,PRDM7,SPATA2L,SPATA33,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276"
TCGA.AG.3891.01A	16	89755596	90142216	124	0.2729	NEUTRAL	NA	14	"CDK10,CENPBD1,DBNDD1,DEF8,FANCA,GAS8,MC1R,PRDM7,SPATA2L,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276"
TCGA.AA.3861.01A	16	89756926	89880884	54	0.2684	NEUTRAL	NA	5	"CDK10,FANCA,SPATA2L,VPS9D1,ZNF276"
TCGA.AA.A01Q.01A	16	89763690	89865386	40	-0.3188	NEUTRAL	NA	4	"FANCA,SPATA2L,VPS9D1,ZNF276"
TCGA.AG.4009.01A	16	89800300	89869611	31	0.1001	NEUTRAL	NA	2	"FANCA,ZNF276"
TCGA.AA.A010.01A	16	89811327	89828317	7	-0.1239	NEUTRAL	NA	1	FANCA
TCGA.CK.5914.01A	16	89836224	89858821	13	0.3281	NEUTRAL	NA	1	FANCA
TCGA.AA.A010.01A	16	89849240	89858821	5	-0.1661	NEUTRAL	NA	1	FANCA
TCGA.AG.4009.01A	16	89871636	89962363	22	-0.4944	NEUTRAL	NA	3	"FANCA,SPIRE2,TCF25"
TCGA.AA.3861.01A	16	89882243	90142216	69	-0.4592	NEUTRAL	NA	10	"CENPBD1,DBNDD1,DEF8,FANCA,GAS8,MC1R,PRDM7,SPIRE2,TCF25,TUBB3"
TCGA.F5.6465	16	89909400	90163274	52	-0.0466	NEUTRAL	NA	9	"CENPBD1,DBNDD1,DEF8,GAS8,MC1R,PRDM7,SPIRE2,TCF25,TUBB3"
TCGA.AA.A01Q.01A	16	89916665	90128319	59	-0.1196	NEUTRAL	NA	9	"CENPBD1,DBNDD1,DEF8,GAS8,MC1R,PRDM7,SPIRE2,TCF25,TUBB3"
TCGA.CK.5914.01A	16	89916665	90142216	76	-0.2499	NEUTRAL	NA	9	"CENPBD1,DBNDD1,DEF8,GAS8,MC1R,PRDM7,SPIRE2,TCF25,TUBB3"
TCGA.AG.3909.01A	16	89920636	90142216	60	0.1353	NEUTRAL	NA	9	"CENPBD1,DBNDD1,DEF8,GAS8,MC1R,PRDM7,SPIRE2,TCF25,TUBB3"
TCGA.AA.A00L.01A	16	89961408	90037730	24	0.0619	NEUTRAL	NA	5	"CENPBD1,DEF8,MC1R,TCF25,TUBB3"
TCGA.DM.A28F	16	90074084	90163274	31	0.0765	NEUTRAL	NA	3	"DBNDD1,GAS8,PRDM7"
TCGA.AA.3697	16	90103658	90163274	20	-0.0114	NEUTRAL	NA	2	"GAS8,PRDM7"
TCGA.AM.5820	16	90123492	90163274	14	-0.1081	NEUTRAL	NA	1	PRDM7
TCGA.5M.AAT4	16	90124315	90163274	12	0.1293	NEUTRAL	NA	1	PRDM7
TCGA.AA.A00N.01A	17	5960	600590	39	-0.2442	NEUTRAL	NA	6	"C17orf97,DOC2B,FAM101B,LOC100506388,RPH3AL,VPS53"
TCGA.A6.3808.01A	17	5960	1481480	149	-0.1958	NEUTRAL	NA	21	"ABR,BHLHA9,C17orf97,CRK,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,PITPNA,RNMTL1,RPH3AL,SLC43A2,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.AA.3930.01A	17	5960	2246775	290	-0.3227	NEUTRAL	NA	38	"ABR,BHLHA9,C17orf97,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.3862.01A	17	5960	2935613	372	-0.3623	NEUTRAL	NA	43	"ABR,BHLHA9,C17orf97,CLUH,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.3967.01A	17	5960	4851509	760	-0.5053	NEUTRAL	NA	95	"ABR,ALOX15,ANKFY1,ARRB2,ASPA,ATP2A3,BHLHA9,C17orf107,C17orf85,C17orf97,CAMKK1,CHRNE,CLUH,CRK,CTNS,CXCL16,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GLTPD2,GP1BA,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,MED11,METTL16,MINK1,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PELP1,PFN1,PITPNA,PLD2,PRPF8,PSMB6,RAP1GAP2,RILP,RNF167,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC25A11,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TM4SF5,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VMO1,VPS53,WDR81,YWHAE,ZMYND15,ZZEF1"
TCGA.DM.A28M.01A	17	5960	16470603	2360	0.148	NEUTRAL	NA	262	Too-Many
TCGA.AA.3939.01A	17	5960	17707018	2442	0.0709	NEUTRAL	NA	274	Too-Many
TCGA.F5.6811.01A	17	5960	18227097	2672	-0.0171	NEUTRAL	NA	287	Too-Many
TCGA.AH.6549.01A	17	5960	18945073	2764	-0.4074	NEUTRAL	NA	299	Too-Many
TCGA.A6.3810.01A	17	5960	18990987	2798	-0.0208	NEUTRAL	NA	299	Too-Many
TCGA.CK.4948.01B	17	5960	20355074	2935	-0.2913	NEUTRAL	NA	315	Too-Many
TCGA.AA.3980.01A	17	5960	21826060	2943	-0.4796	NEUTRAL	NA	325	Too-Many
TCGA.CK.4952.01A	17	5960	36675121	4919	-0.1303	NEUTRAL	NA	483	Too-Many
TCGA.CM.6165.01A	17	5960	37253108	4453	-0.0878	NEUTRAL	NA	496	Too-Many
TCGA.AA.3815.01A	17	5960	81050855	9716	0.0369	NEUTRAL	NA	1143	Too-Many
TCGA.AY.A54L.01A	17	5960	81051974	10095	-0.0802	NEUTRAL	NA	1143	Too-Many
TCGA.CM.4744.01A	17	5960	81051974	10108	-0.0631	NEUTRAL	NA	1143	Too-Many
TCGA.AG.A01W.01A	17	5965	856049	68	-0.4112	NEUTRAL	NA	11	"C17orf97,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,LOC100506388,NXN,RNMTL1,RPH3AL,VPS53"
TCGA.AA.A02K.01A	17	5965	18286330	2588	-0.3544	NEUTRAL	NA	289	Too-Many
TCGA.AG.A036.01A	17	5965	78645381	9878	-0.1806	NEUTRAL	NA	1078	Too-Many
TCGA.A6.6652	17	6887	38923	8	0.0219	NEUTRAL	NA	1	DOC2B
TCGA.AA.3488	17	6887	95630	20	-0.1287	NEUTRAL	NA	2	"DOC2B,RPH3AL"
TCGA.AM.5820	17	6887	95630	20	-0.0595	NEUTRAL	NA	2	"DOC2B,RPH3AL"
TCGA.AA.3986	17	6887	807504	160	0.1349	NEUTRAL	NA	11	"C17orf97,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,LOC100506388,NXN,RNMTL1,RPH3AL,VPS53"
TCGA.AA.3870	17	6887	840896	170	0.192	NEUTRAL	NA	11	"C17orf97,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,LOC100506388,NXN,RNMTL1,RPH3AL,VPS53"
TCGA.CM.6163	17	6887	1413845	287	-0.0512	NEUTRAL	NA	19	"ABR,BHLHA9,C17orf97,CRK,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,RNMTL1,RPH3AL,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.A6.6650	17	6887	1521544	285	0.229	NEUTRAL	NA	21	"ABR,BHLHA9,C17orf97,CRK,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,PITPNA,RNMTL1,RPH3AL,SLC43A2,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.AA.3867	17	6887	2654151	529	-0.3044	NEUTRAL	NA	42	"ABR,BHLHA9,C17orf97,CLUH,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OVCA2,PAFAH1B1,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.DC.4745	17	6887	3327811	720	-0.0968	NEUTRAL	NA	52	"ABR,BHLHA9,C17orf97,CLUH,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.CK.6748	17	6887	3394214	736	-0.0237	NEUTRAL	NA	55	"ABR,ASPA,BHLHA9,C17orf97,CLUH,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.CI.6621	17	6887	3494360	783	0.0925	NEUTRAL	NA	57	"ABR,ASPA,BHLHA9,C17orf97,CLUH,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.3848	17	6887	3498410	787	-0.2594	NEUTRAL	NA	57	"ABR,ASPA,BHLHA9,C17orf97,CLUH,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.T9.A92H	17	6887	3656365	829	0.0094	NEUTRAL	NA	64	"ABR,ASPA,BHLHA9,C17orf97,CLUH,CRK,CTNS,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.3662	17	6887	3775915	865	-0.5133	NEUTRAL	NA	66	"ABR,ASPA,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.EI.6508	17	6887	4080093	953	0.0472	NEUTRAL	NA	71	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AZ.4682	17	6887	4151819	973	0.0107	NEUTRAL	NA	71	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.QL.A97D	17	6887	4310638	1005	0.1348	NEUTRAL	NA	72	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.CL.4957	17	6887	4494072	1051	0.0145	NEUTRAL	NA	77	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.D5.6536	17	6887	4535384	1059	-0.0584	NEUTRAL	NA	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AH.6643	17	6887	4538499	1058	-0.4508	NEUTRAL	NA	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.A6.A56B	17	6887	4539357	1054	-0.0464	NEUTRAL	NA	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.A6.3807	17	6887	4902957	1119	0.0462	NEUTRAL	NA	100	"ABR,ALOX15,ANKFY1,ARRB2,ASPA,ATP2A3,BHLHA9,C17orf107,C17orf85,C17orf97,CAMKK1,CAMTA2,CHRNE,CLUH,CRK,CTNS,CXCL16,CYB5D2,DOC2B,DPH1,EMC6,ENO3,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GLTPD2,GP1BA,GSG2,HIC1,INCA1,INPP5K,ITGAE,KIF1C,LOC100506388,MED11,METTL16,MINK1,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PELP1,PFN1,PITPNA,PLD2,PRPF8,PSMB6,RAP1GAP2,RILP,RNF167,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC25A11,SLC43A2,SMG6,SMTNL2,SMYD4,SPAG7,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TM4SF5,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VMO1,VPS53,WDR81,YWHAE,ZMYND15,ZZEF1"
TCGA.AA.3966	17	6887	5770669	1384	0.1233	NEUTRAL	NA	115	Too-Many
TCGA.AA.3514	17	6887	6094334	1529	0.038	NEUTRAL	NA	116	Too-Many
TCGA.AF.6672	17	6887	6094334	1525	-0.0052	NEUTRAL	NA	116	Too-Many
TCGA.AY.A8YK	17	6887	6101083	1530	-0.0678	NEUTRAL	NA	116	Too-Many
TCGA.AA.3977	17	6887	6594013	1757	0.2186	NEUTRAL	NA	124	Too-Many
TCGA.F5.6861	17	6887	6604707	1762	-0.0144	NEUTRAL	NA	124	Too-Many
TCGA.AZ.4614	17	6887	6830381	1803	-0.0053	NEUTRAL	NA	127	Too-Many
TCGA.AA.3846	17	6887	7051468	1878	0.3295	NEUTRAL	NA	135	Too-Many
TCGA.D5.6923	17	6887	7051468	1876	0.008	NEUTRAL	NA	135	Too-Many
TCGA.AA.3864	17	6887	8488797	2144	0.2172	NEUTRAL	NA	209	Too-Many
TCGA.A6.2681	17	6887	9047518	2348	0.1464	NEUTRAL	NA	215	Too-Many
TCGA.AG.3890	17	6887	9870231	2699	-0.0373	NEUTRAL	NA	222	Too-Many
TCGA.AA.3560	17	6887	10440379	2946	-0.4583	NEUTRAL	NA	227	Too-Many
TCGA.AA.3549	17	6887	10492160	2958	-0.2277	NEUTRAL	NA	227	Too-Many
TCGA.AG.3574	17	6887	10665349	3006	0.0258	NEUTRAL	NA	231	Too-Many
TCGA.AD.6890	17	6887	11438104	3362	-0.4145	NEUTRAL	NA	233	Too-Many
TCGA.AG.3885	17	6887	11651948	3451	-0.4946	NEUTRAL	NA	234	Too-Many
TCGA.G4.6315	17	6887	12190712	3611	-0.4492	NEUTRAL	NA	236	Too-Many
TCGA.AZ.6601	17	6887	13148335	3989	-0.0794	NEUTRAL	NA	239	Too-Many
TCGA.EI.6885	17	6887	13393881	4096	-0.0162	NEUTRAL	NA	239	Too-Many
TCGA.AA.3955	17	6887	14098276	4390	-0.4246	NEUTRAL	NA	241	Too-Many
TCGA.EI.7004	17	6887	14986405	4831	-0.3702	NEUTRAL	NA	243	Too-Many
TCGA.AF.2689	17	6887	15422431	5031	-0.4203	NEUTRAL	NA	248	Too-Many
TCGA.AA.3856	17	6887	15554277	5038	-0.3839	NEUTRAL	NA	250	Too-Many
TCGA.CI.6620	17	6887	15592761	5037	-0.4774	NEUTRAL	NA	250	Too-Many
TCGA.CM.4747	17	6887	15869556	5069	-0.4704	NEUTRAL	NA	253	Too-Many
TCGA.AA.3842	17	6887	16413608	5159	-0.4589	NEUTRAL	NA	261	Too-Many
TCGA.G4.6297	17	6887	16581800	5195	-0.1548	NEUTRAL	NA	263	Too-Many
TCGA.CA.6719	17	6887	18046289	5483	-0.1957	NEUTRAL	NA	281	Too-Many
TCGA.AY.4070	17	6887	18696072	5541	-0.2524	NEUTRAL	NA	295	Too-Many
TCGA.A6.2685	17	6887	18833061	5583	-0.3251	NEUTRAL	NA	296	Too-Many
TCGA.AH.6644	17	6887	18846524	5590	-0.4143	NEUTRAL	NA	296	Too-Many
TCGA.AA.3814	17	6887	18896296	5611	-0.4874	NEUTRAL	NA	298	Too-Many
TCGA.AA.3712	17	6887	18917914	5608	-0.4637	NEUTRAL	NA	298	Too-Many
TCGA.AZ.6605	17	6887	18917914	5594	-0.3938	NEUTRAL	NA	298	Too-Many
TCGA.D5.6537	17	6887	18917914	5586	-0.0648	NEUTRAL	NA	298	Too-Many
TCGA.3L.AA1B	17	6887	19168911	5610	-0.3821	NEUTRAL	NA	303	Too-Many
TCGA.AZ.5407	17	6887	19307165	5636	-0.2901	NEUTRAL	NA	306	Too-Many
TCGA.AD.6888	17	6887	19310682	5633	-0.3995	NEUTRAL	NA	306	Too-Many
TCGA.A6.5667	17	6887	19671457	5710	-0.4671	NEUTRAL	NA	311	Too-Many
TCGA.AA.3812	17	6887	19969396	5769	0.0016	NEUTRAL	NA	314	Too-Many
TCGA.F5.6810	17	6887	20029900	5775	-0.4942	NEUTRAL	NA	314	Too-Many
TCGA.G4.6298	17	6887	20134288	5791	-0.4792	NEUTRAL	NA	314	Too-Many
TCGA.AA.3695	17	6887	20215351	5811	-0.3744	NEUTRAL	NA	314	Too-Many
TCGA.AZ.6607	17	6887	20215904	5793	-0.4097	NEUTRAL	NA	314	Too-Many
TCGA.D5.6898	17	6887	20221327	5800	-0.3476	NEUTRAL	NA	314	Too-Many
TCGA.G4.6314	17	6887	20221327	5814	-0.3444	NEUTRAL	NA	314	Too-Many
TCGA.D5.6924	17	6887	20522443	5802	-0.3128	NEUTRAL	NA	316	Too-Many
TCGA.DC.6682	17	6887	20630546	5811	-0.4978	NEUTRAL	NA	316	Too-Many
TCGA.AA.3956	17	6887	20665681	5815	-0.3732	NEUTRAL	NA	316	Too-Many
TCGA.AA.3678	17	6887	20752506	5838	-0.5083	NEUTRAL	NA	316	Too-Many
TCGA.G4.6307	17	6887	20817235	5844	-0.45	NEUTRAL	NA	317	Too-Many
TCGA.AA.3679	17	6887	20853294	5854	-0.0335	NEUTRAL	NA	317	Too-Many
TCGA.AA.3837	17	6887	20879720	5858	-0.3049	NEUTRAL	NA	317	Too-Many
TCGA.AA.3841	17	6887	21031068	5896	-0.3731	NEUTRAL	NA	319	Too-Many
TCGA.A6.2680	17	6887	21050157	5887	-0.3963	NEUTRAL	NA	319	Too-Many
TCGA.AA.3872	17	6887	21074152	5890	-0.4805	NEUTRAL	NA	319	Too-Many
TCGA.AG.3881	17	6887	21286437	5935	-0.2766	NEUTRAL	NA	323	Too-Many
TCGA.A6.4105	17	6887	21367903	5942	-0.3801	NEUTRAL	NA	324	Too-Many
TCGA.AZ.4616	17	6887	21516191	5940	-0.3549	NEUTRAL	NA	325	Too-Many
TCGA.D5.6535	17	6887	21516191	5958	-0.3698	NEUTRAL	NA	325	Too-Many
TCGA.G5.6235	17	6887	21516191	5962	-0.3378	NEUTRAL	NA	325	Too-Many
TCGA.F4.6809	17	6887	21527045	5950	-0.4624	NEUTRAL	NA	325	Too-Many
TCGA.G4.6303	17	6887	21527045	5961	-0.4544	NEUTRAL	NA	325	Too-Many
TCGA.AA.3529	17	6887	21552185	5960	-0.0321	NEUTRAL	NA	325	Too-Many
TCGA.EI.6884	17	6887	21552185	5948	-0.289	NEUTRAL	NA	325	Too-Many
TCGA.F4.6805	17	6887	21732692	5959	-0.4978	NEUTRAL	NA	325	Too-Many
TCGA.AG.3902	17	6887	21779837	5956	-0.4372	NEUTRAL	NA	325	Too-Many
TCGA.DC.6154	17	6887	21845700	5967	-0.0477	NEUTRAL	NA	325	Too-Many
TCGA.F4.6807	17	6887	21919683	5969	-0.4885	NEUTRAL	NA	325	Too-Many
TCGA.G4.6320	17	6887	21963241	5991	-0.2203	NEUTRAL	NA	325	Too-Many
TCGA.D5.6922	17	6887	22097292	5987	-0.4529	NEUTRAL	NA	326	Too-Many
TCGA.AD.6963	17	6887	22105109	5993	-0.252	NEUTRAL	NA	326	Too-Many
TCGA.AA.A03J	17	6887	22108782	5845	-0.3039	NEUTRAL	NA	326	Too-Many
TCGA.AA.A02O	17	6887	22145505	6006	-0.017	NEUTRAL	NA	326	Too-Many
TCGA.CM.5868	17	6887	22159898	5997	-0.3438	NEUTRAL	NA	326	Too-Many
TCGA.A6.5665	17	6887	22168794	5996	-0.4363	NEUTRAL	NA	326	Too-Many
TCGA.AA.3681	17	6887	22168794	6007	-0.5022	NEUTRAL	NA	326	Too-Many
TCGA.AF.2690	17	6887	22168794	6010	-0.291	NEUTRAL	NA	326	Too-Many
TCGA.AF.2691	17	6887	22168794	6008	-0.366	NEUTRAL	NA	326	Too-Many
TCGA.AA.3532	17	6887	22170993	6010	-0.2938	NEUTRAL	NA	326	Too-Many
TCGA.A6.5660	17	6887	22217679	5995	-0.1997	NEUTRAL	NA	326	Too-Many
TCGA.CM.6167	17	6887	22217882	6011	-0.2847	NEUTRAL	NA	326	Too-Many
TCGA.5M.AAT4	17	6887	22235649	6011	-0.4974	NEUTRAL	NA	326	Too-Many
TCGA.A6.2675	17	6887	22235649	5985	-0.3809	NEUTRAL	NA	326	Too-Many
TCGA.AA.3994	17	6887	22235649	6001	-0.0242	NEUTRAL	NA	326	Too-Many
TCGA.AG.4008	17	6887	22235649	5972	-0.4261	NEUTRAL	NA	326	Too-Many
TCGA.AG.4015	17	6887	22235649	5994	-0.4721	NEUTRAL	NA	326	Too-Many
TCGA.5M.AATA	17	6887	25313689	6012	-0.463	NEUTRAL	NA	326	Too-Many
TCGA.A6.6137	17	6887	25313689	6016	-0.3934	NEUTRAL	NA	326	Too-Many
TCGA.AA.3495	17	6887	25313689	6012	-0.4919	NEUTRAL	NA	326	Too-Many
TCGA.AA.3851	17	6887	25313689	6009	-0.4689	NEUTRAL	NA	326	Too-Many
TCGA.AA.3866	17	6887	25313689	6010	-0.4557	NEUTRAL	NA	326	Too-Many
TCGA.AA.3875	17	6887	25313689	6017	-0.4181	NEUTRAL	NA	326	Too-Many
TCGA.AA.3971	17	6887	25313689	6011	-0.4772	NEUTRAL	NA	326	Too-Many
TCGA.AG.3883	17	6887	25313689	6018	-0.2813	NEUTRAL	NA	326	Too-Many
TCGA.AH.6897	17	6887	25313689	6005	-0.475	NEUTRAL	NA	326	Too-Many
TCGA.CM.4746	17	6887	25313689	6010	-0.0743	NEUTRAL	NA	326	Too-Many
TCGA.CM.4752	17	6887	25313689	6007	-0.4122	NEUTRAL	NA	326	Too-Many
TCGA.CM.6676	17	6887	25313689	5997	-0.3195	NEUTRAL	NA	326	Too-Many
TCGA.D5.6929	17	6887	25313689	6002	-0.0522	NEUTRAL	NA	326	Too-Many
TCGA.DC.6683	17	6887	25313689	6005	-0.4053	NEUTRAL	NA	326	Too-Many
TCGA.EI.6510	17	6887	25313689	6001	-0.2282	NEUTRAL	NA	326	Too-Many
TCGA.F5.6464	17	6887	25313689	6016	-0.4871	NEUTRAL	NA	326	Too-Many
TCGA.G4.6310	17	6887	25313689	6014	-0.4073	NEUTRAL	NA	326	Too-Many
TCGA.G4.6311	17	6887	25313689	6014	-0.3878	NEUTRAL	NA	326	Too-Many
TCGA.G4.6626	17	6887	25313689	6016	-0.4421	NEUTRAL	NA	326	Too-Many
TCGA.AU.3779	17	6887	25343370	6014	-0.3956	NEUTRAL	NA	326	Too-Many
TCGA.CM.6164	17	6887	25343370	6008	-0.4761	NEUTRAL	NA	326	Too-Many
TCGA.DC.6158	17	6887	25343370	6000	-0.3282	NEUTRAL	NA	326	Too-Many
TCGA.A6.6648	17	6887	25346691	6017	-0.3457	NEUTRAL	NA	326	Too-Many
TCGA.G4.6625	17	6887	25346691	6015	-0.2404	NEUTRAL	NA	326	Too-Many
TCGA.CM.5344	17	6887	25363653	6001	-0.312	NEUTRAL	NA	326	Too-Many
TCGA.D5.6926	17	6887	25363653	6007	-0.5115	NEUTRAL	NA	326	Too-Many
TCGA.AH.6544	17	6887	25396370	6014	-0.3011	NEUTRAL	NA	326	Too-Many
TCGA.CI.6619	17	6887	25402268	6017	-0.1635	NEUTRAL	NA	326	Too-Many
TCGA.D5.5539	17	6887	25404048	6015	-0.4846	NEUTRAL	NA	326	Too-Many
TCGA.AA.3982	17	6887	25472564	6021	-0.0258	NEUTRAL	NA	326	Too-Many
TCGA.AZ.6600	17	6887	25785741	6093	-0.3536	NEUTRAL	NA	327	Too-Many
TCGA.AG.3731	17	6887	26008051	6144	-0.3726	NEUTRAL	NA	329	Too-Many
TCGA.AA.3869	17	6887	26791158	6254	-0.478	NEUTRAL	NA	341	Too-Many
TCGA.F4.6461	17	6887	28676526	6470	-0.1421	NEUTRAL	NA	381	Too-Many
TCGA.G4.6322	17	6887	29843254	6626	-0.0437	NEUTRAL	NA	394	Too-Many
TCGA.A6.6653	17	6887	32808835	7828	-0.0265	NEUTRAL	NA	414	Too-Many
TCGA.AF.2692	17	6887	33878223	8182	-0.4528	NEUTRAL	NA	431	Too-Many
TCGA.AY.A71X	17	6887	34436707	8320	-0.0625	NEUTRAL	NA	449	Too-Many
TCGA.AZ.5403	17	6887	34436707	8316	-0.0305	NEUTRAL	NA	449	Too-Many
TCGA.G4.6299	17	6887	34436707	8327	0.1983	NEUTRAL	NA	449	Too-Many
TCGA.F4.6704	17	6887	34447401	8314	0.0267	NEUTRAL	NA	449	Too-Many
TCGA.DM.A0XF	17	6887	35226985	8488	-0.2713	NEUTRAL	NA	463	Too-Many
TCGA.AA.3811	17	6887	36582435	8766	-0.0184	NEUTRAL	NA	482	Too-Many
TCGA.AA.A01T	17	6887	42647426	9921	-0.2396	NEUTRAL	NA	687	Too-Many
TCGA.F5.6702	17	6887	43183027	10012	-0.2981	NEUTRAL	NA	700	Too-Many
TCGA.CK.5913	17	6887	43549525	10100	-0.0054	NEUTRAL	NA	709	Too-Many
TCGA.F4.6570	17	6887	43554901	10111	-0.0383	NEUTRAL	NA	709	Too-Many
TCGA.AA.3518	17	6887	43779623	10094	0.0132	NEUTRAL	NA	710	Too-Many
TCGA.AA.3818	17	6887	43920241	10201	-0.0338	NEUTRAL	NA	711	Too-Many
TCGA.AA.3526	17	6887	44153521	10276	-0.021	NEUTRAL	NA	715	Too-Many
TCGA.AZ.6599	17	6887	44157596	10277	-0.0703	NEUTRAL	NA	715	Too-Many
TCGA.CK.4947	17	6887	44157596	10259	-0.0418	NEUTRAL	NA	715	Too-Many
TCGA.CM.5860	17	6887	44157596	10264	-0.0301	NEUTRAL	NA	715	Too-Many
TCGA.AA.3530	17	6887	44162283	10245	0.1889	NEUTRAL	NA	715	Too-Many
TCGA.CM.5861	17	6887	44162283	10266	-0.0108	NEUTRAL	NA	715	Too-Many
TCGA.CA.5797	17	6887	44162596	10267	-0.3009	NEUTRAL	NA	715	Too-Many
TCGA.DM.A1HB	17	6887	44162596	10003	0.0325	NEUTRAL	NA	715	Too-Many
TCGA.A6.6141	17	6887	44166454	10282	-0.0381	NEUTRAL	NA	715	Too-Many
TCGA.G4.6302	17	6887	44166603	10290	-0.0148	NEUTRAL	NA	715	Too-Many
TCGA.A6.6780	17	6887	44208143	10268	0.0153	NEUTRAL	NA	715	Too-Many
TCGA.AA.3522	17	6887	44233775	10292	-0.3898	NEUTRAL	NA	715	Too-Many
TCGA.AA.3877	17	6887	44267862	10315	0.017	NEUTRAL	NA	715	Too-Many
TCGA.G5.6233	17	6887	46221009	10632	-0.1729	NEUTRAL	NA	746	Too-Many
TCGA.A6.6654	17	6887	46644160	10697	0	NEUTRAL	NA	749	Too-Many
TCGA.AA.3854	17	6887	49050558	11276	0.0296	NEUTRAL	NA	805	Too-Many
TCGA.AA.3844	17	6887	49694037	11411	0.0885	NEUTRAL	NA	810	Too-Many
TCGA.DC.6681	17	6887	54223231	12968	-0.0299	NEUTRAL	NA	820	Too-Many
TCGA.AA.3558	17	6887	56195245	13765	0.016	NEUTRAL	NA	835	Too-Many
TCGA.AG.3728	17	6887	56195245	13775	-0.0134	NEUTRAL	NA	835	Too-Many
TCGA.QG.A5Z2	17	6887	60789231	14289	-0.0483	NEUTRAL	NA	883	Too-Many
TCGA.AA.3950	17	6887	63003698	14747	0.0584	NEUTRAL	NA	915	Too-Many
TCGA.AD.6901	17	6887	64413921	15148	-0.3336	NEUTRAL	NA	921	Too-Many
TCGA.A6.2672	17	6887	64890986	15376	-0.2686	NEUTRAL	NA	922	Too-Many
TCGA.AG.A020	17	6887	70069543	17125	-0.0176	NEUTRAL	NA	945	Too-Many
TCGA.AM.5821	17	6887	71737075	17783	0.0351	NEUTRAL	NA	955	Too-Many
TCGA.A6.2686	17	6887	77234670	19332	0.3052	NEUTRAL	NA	1063	Too-Many
TCGA.AG.3599	17	6887	77237482	19345	0.0238	NEUTRAL	NA	1063	Too-Many
TCGA.AA.3527	17	6887	77243062	19362	-0.0167	NEUTRAL	NA	1063	Too-Many
TCGA.AG.3901	17	6887	79253577	19848	-0.0352	NEUTRAL	NA	1085	Too-Many
TCGA.AA.3821	17	6887	80958631	20113	0.0775	NEUTRAL	NA	1142	Too-Many
TCGA.AY.A69D	17	6887	81022457	20087	-0.3269	NEUTRAL	NA	1142	Too-Many
TCGA.4T.AA8H	17	6887	81048658	20149	0.3445	NEUTRAL	NA	1143	Too-Many
TCGA.5M.AAT6	17	6887	81048658	20134	0.0166	NEUTRAL	NA	1143	Too-Many
TCGA.A6.2671	17	6887	81048658	20122	-0.2392	NEUTRAL	NA	1143	Too-Many
TCGA.A6.2674	17	6887	81048658	20156	-0.1453	NEUTRAL	NA	1143	Too-Many
TCGA.A6.2679	17	6887	81048658	20141	0.008	NEUTRAL	NA	1143	Too-Many
TCGA.A6.2682	17	6887	81048658	19826	-0.0011	NEUTRAL	NA	1143	Too-Many
TCGA.A6.3809	17	6887	81048658	18735	0.0009	NEUTRAL	NA	1143	Too-Many
TCGA.A6.4107	17	6887	81048658	20137	-0.2923	NEUTRAL	NA	1143	Too-Many
TCGA.A6.5657	17	6887	81048658	20115	-0.1133	NEUTRAL	NA	1143	Too-Many
TCGA.A6.5662	17	6887	81048658	20082	0.0587	NEUTRAL	NA	1143	Too-Many
TCGA.A6.5664	17	6887	81048658	20115	0	NEUTRAL	NA	1143	Too-Many
TCGA.A6.6142	17	6887	81048658	20161	0.2035	NEUTRAL	NA	1143	Too-Many
TCGA.A6.6649	17	6887	81048658	20158	-0.2004	NEUTRAL	NA	1143	Too-Many
TCGA.A6.6651	17	6887	81048658	20089	0.1684	NEUTRAL	NA	1143	Too-Many
TCGA.A6.6781	17	6887	81048658	18670	-0.0253	NEUTRAL	NA	1143	Too-Many
TCGA.A6.A565	17	6887	81048658	19999	-0.0405	NEUTRAL	NA	1143	Too-Many
TCGA.A6.A566	17	6887	81048658	19954	-0.0029	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3489	17	6887	81048658	20097	-0.0384	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3492	17	6887	81048658	20148	0.008	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3502	17	6887	81048658	20137	-0.0337	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3510	17	6887	81048658	20128	-0.0032	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3516	17	6887	81048658	20117	0.0334	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3531	17	6887	81048658	20152	-0.0225	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3534	17	6887	81048658	20155	-0.0139	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3543	17	6887	81048658	20136	0.0101	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3555	17	6887	81048658	20160	0.0162	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3663	17	6887	81048658	20109	0.0045	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3666	17	6887	81048658	20166	-0.428	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3675	17	6887	81048658	20160	0.0191	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3680	17	6887	81048658	20166	0.0219	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3684	17	6887	81048658	20165	0.0136	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3685	17	6887	81048658	20167	-0.223	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3696	17	6887	81048658	20167	0.0007	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3710	17	6887	81048658	20145	0.0019	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3713	17	6887	81048658	20151	-0.011	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3715	17	6887	81048658	20168	0.0292	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3831	17	6887	81048658	20131	-0.0015	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3833	17	6887	81048658	20166	-0.0251	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3845	17	6887	81048658	20126	0.0686	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3852	17	6887	81048658	20169	-0.0219	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3860	17	6887	81048658	20157	0.0417	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3947	17	6887	81048658	20118	0.0343	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3949	17	6887	81048658	20137	0.0646	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3973	17	6887	81048658	20141	0.0771	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3976	17	6887	81048658	20140	-0.4158	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3984	17	6887	81048658	20116	0.0091	NEUTRAL	NA	1143	Too-Many
TCGA.AA.3989	17	6887	81048658	20145	-0.193	NEUTRAL	NA	1143	Too-Many
TCGA.AA.A01P	17	6887	81048658	20137	0	NEUTRAL	NA	1143	Too-Many
TCGA.AA.A01R	17	6887	81048658	20147	0.0187	NEUTRAL	NA	1143	Too-Many
TCGA.AA.A01V	17	6887	81048658	20141	0.0387	NEUTRAL	NA	1143	Too-Many
TCGA.AA.A01X	17	6887	81048658	20115	0.0344	NEUTRAL	NA	1143	Too-Many
TCGA.AA.A022	17	6887	81048658	20104	-0.0129	NEUTRAL	NA	1143	Too-Many
TCGA.AA.A02Y	17	6887	81048658	20133	0.0138	NEUTRAL	NA	1143	Too-Many
TCGA.AA.A03F	17	6887	81048658	20139	0.002	NEUTRAL	NA	1143	Too-Many
TCGA.AD.5900	17	6887	81048658	20110	-0.0332	NEUTRAL	NA	1143	Too-Many
TCGA.AD.6889	17	6887	81048658	20127	-0.0627	NEUTRAL	NA	1143	Too-Many
TCGA.AD.6895	17	6887	81048658	20131	-0.0528	NEUTRAL	NA	1143	Too-Many
TCGA.AD.6899	17	6887	81048658	20086	-0.1849	NEUTRAL	NA	1143	Too-Many
TCGA.AD.6964	17	6887	81048658	20130	-0.0501	NEUTRAL	NA	1143	Too-Many
TCGA.AD.A5EJ	17	6887	81048658	20009	-0.0211	NEUTRAL	NA	1143	Too-Many
TCGA.AF.2687	17	6887	81048658	20114	-0.0169	NEUTRAL	NA	1143	Too-Many
TCGA.AF.3913	17	6887	81048658	20083	-0.0451	NEUTRAL	NA	1143	Too-Many
TCGA.AF.5654	17	6887	81048658	20103	0.0186	NEUTRAL	NA	1143	Too-Many
TCGA.AF.6136	17	6887	81048658	20133	-0.3571	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3580	17	6887	81048658	20155	0.0304	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3583	17	6887	81048658	19500	0.0157	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3592	17	6887	81048658	20164	-0.04	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3612	17	6887	81048658	19989	0.0373	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3878	17	6887	81048658	20168	0.0789	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3882	17	6887	81048658	20161	0.1413	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3887	17	6887	81048658	20062	0	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3892	17	6887	81048658	20087	0.0055	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3894	17	6887	81048658	20093	-0.0033	NEUTRAL	NA	1143	Too-Many
TCGA.AG.3896	17	6887	81048658	20097	-0.0022	NEUTRAL	NA	1143	Too-Many
TCGA.AG.4022	17	6887	81048658	20163	-0.0791	NEUTRAL	NA	1143	Too-Many
TCGA.AG.A02N	17	6887	81048658	20132	0.0166	NEUTRAL	NA	1143	Too-Many
TCGA.AH.6547	17	6887	81048658	20134	0.0049	NEUTRAL	NA	1143	Too-Many
TCGA.AH.6903	17	6887	81048658	20114	-0.002	NEUTRAL	NA	1143	Too-Many
TCGA.AU.6004	17	6887	81048658	20024	-0.0655	NEUTRAL	NA	1143	Too-Many
TCGA.AY.4071	17	6887	81048658	20024	-0.0642	NEUTRAL	NA	1143	Too-Many
TCGA.AY.6196	17	6887	81048658	19905	-0.1134	NEUTRAL	NA	1143	Too-Many
TCGA.AY.6197	17	6887	81048658	19674	-0.0118	NEUTRAL	NA	1143	Too-Many
TCGA.AY.6386	17	6887	81048658	20134	-0.0313	NEUTRAL	NA	1143	Too-Many
TCGA.AZ.4315	17	6887	81048658	20130	-0.0228	NEUTRAL	NA	1143	Too-Many
TCGA.AZ.4323	17	6887	81048658	20068	0.007	NEUTRAL	NA	1143	Too-Many
TCGA.AZ.4615	17	6887	81048658	20138	-0.0034	NEUTRAL	NA	1143	Too-Many
TCGA.AZ.6598	17	6887	81048658	20163	-0.0308	NEUTRAL	NA	1143	Too-Many
TCGA.AZ.6606	17	6887	81048658	20089	0.0257	NEUTRAL	NA	1143	Too-Many
TCGA.BM.6198	17	6887	81048658	20157	-0.47975	NEUTRAL	NA	1143	Too-Many
TCGA.CA.5255	17	6887	81048658	20087	-0.0263	NEUTRAL	NA	1143	Too-Many
TCGA.CA.5796	17	6887	81048658	20105	0.0066	NEUTRAL	NA	1143	Too-Many
TCGA.CA.6716	17	6887	81048658	20118	-0.2573	NEUTRAL	NA	1143	Too-Many
TCGA.CA.6717	17	6887	81048658	20087	-0.0184	NEUTRAL	NA	1143	Too-Many
TCGA.CA.6718	17	6887	81048658	20098	-0.0022	NEUTRAL	NA	1143	Too-Many
TCGA.CI.6623	17	6887	81048658	20133	0.0033	NEUTRAL	NA	1143	Too-Many
TCGA.CI.6624	17	6887	81048658	20115	0.0478	NEUTRAL	NA	1143	Too-Many
TCGA.CK.4950	17	6887	81048658	19974	-0.0686	NEUTRAL	NA	1143	Too-Many
TCGA.CK.4951	17	6887	81048658	20049	0.0072	NEUTRAL	NA	1143	Too-Many
TCGA.CK.5915	17	6887	81048658	20117	-0.2613	NEUTRAL	NA	1143	Too-Many
TCGA.CK.5916	17	6887	81048658	20103	-0.0199	NEUTRAL	NA	1143	Too-Many
TCGA.CK.6746	17	6887	81048658	20101	0.0068	NEUTRAL	NA	1143	Too-Many
TCGA.CK.6747	17	6887	81048658	20072	-0.0361	NEUTRAL	NA	1143	Too-Many
TCGA.CK.6751	17	6887	81048658	20041	-0.0047	NEUTRAL	NA	1143	Too-Many
TCGA.CL.5917	17	6887	81048658	20106	-0.0243	NEUTRAL	NA	1143	Too-Many
TCGA.CM.4743	17	6887	81048658	20149	-0.0391	NEUTRAL	NA	1143	Too-Many
TCGA.CM.4748	17	6887	81048658	20149	-0.0111	NEUTRAL	NA	1143	Too-Many
TCGA.CM.5348	17	6887	81048658	20154	-0.0449	NEUTRAL	NA	1143	Too-Many
TCGA.CM.5349	17	6887	81048658	20155	-0.0588	NEUTRAL	NA	1143	Too-Many
TCGA.CM.5863	17	6887	81048658	20124	0.0494	NEUTRAL	NA	1143	Too-Many
TCGA.CM.5864	17	6887	81048658	20100	-0.1928	NEUTRAL	NA	1143	Too-Many
TCGA.CM.6161	17	6887	81048658	20113	-0.15	NEUTRAL	NA	1143	Too-Many
TCGA.CM.6162	17	6887	81048658	20094	-0.0543	NEUTRAL	NA	1143	Too-Many
TCGA.CM.6168	17	6887	81048658	20149	-0.0149	NEUTRAL	NA	1143	Too-Many
TCGA.CM.6171	17	6887	81048658	20161	-0.0372	NEUTRAL	NA	1143	Too-Many
TCGA.CM.6674	17	6887	81048658	20118	-0.0225	NEUTRAL	NA	1143	Too-Many
TCGA.CM.6677	17	6887	81048658	20070	0.0018	NEUTRAL	NA	1143	Too-Many
TCGA.CM.6678	17	6887	81048658	20108	0.1857	NEUTRAL	NA	1143	Too-Many
TCGA.CM.6680	17	6887	81048658	20118	-0.0458	NEUTRAL	NA	1143	Too-Many
TCGA.D5.5537	17	6887	81048658	20103	-0.3915	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6529	17	6887	81048658	20157	-0.0047	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6530	17	6887	81048658	20154	-0.0419	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6534	17	6887	81048658	20113	-0.2194	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6539	17	6887	81048658	20119	-0.1534	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6540	17	6887	81048658	20112	0.0162	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6920	17	6887	81048658	20109	-0.0132	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6927	17	6887	81048658	20118	0.0125	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6928	17	6887	81048658	20114	-0.0226	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6930	17	6887	81048658	20111	-0.0039	NEUTRAL	NA	1143	Too-Many
TCGA.D5.6931	17	6887	81048658	20107	-0.0119	NEUTRAL	NA	1143	Too-Many
TCGA.D5.7000	17	6887	81048658	20055	0.0011	NEUTRAL	NA	1143	Too-Many
TCGA.DC.5337	17	6887	81048658	20060	-0.0184	NEUTRAL	NA	1143	Too-Many
TCGA.DC.5869	17	6887	81048658	20107	-0.0482	NEUTRAL	NA	1143	Too-Many
TCGA.DC.6155	17	6887	81048658	20062	-0.4382	NEUTRAL	NA	1143	Too-Many
TCGA.DC.6157	17	6887	81048658	19954	-0.0734	NEUTRAL	NA	1143	Too-Many
TCGA.DM.A0X9	17	6887	81048658	20150	-0.0099	NEUTRAL	NA	1143	Too-Many
TCGA.DM.A1D6	17	6887	81048658	20157	-0.0829	NEUTRAL	NA	1143	Too-Many
TCGA.DM.A1D8	17	6887	81048658	20132	-0.4638	NEUTRAL	NA	1143	Too-Many
TCGA.DM.A1DA	17	6887	81048658	20145	-0.1272	NEUTRAL	NA	1143	Too-Many
TCGA.DM.A280	17	6887	81048658	20114	0.0123	NEUTRAL	NA	1143	Too-Many
TCGA.DM.A28C	17	6887	81048658	20129	-0.0466	NEUTRAL	NA	1143	Too-Many
TCGA.DM.A28G	17	6887	81048658	20128	0.0102	NEUTRAL	NA	1143	Too-Many
TCGA.DM.A28K	17	6887	81048658	20105	0.0072	NEUTRAL	NA	1143	Too-Many
TCGA.DY.A1H8	17	6887	81048658	20154	0.0069	NEUTRAL	NA	1143	Too-Many
TCGA.EI.6506	17	6887	81048658	20131	-0.0197	NEUTRAL	NA	1143	Too-Many
TCGA.EI.6507	17	6887	81048658	20160	-0.0138	NEUTRAL	NA	1143	Too-Many
TCGA.EI.6511	17	6887	81048658	20148	-0.0176	NEUTRAL	NA	1143	Too-Many
TCGA.EI.6881	17	6887	81048658	20116	-0.2369	NEUTRAL	NA	1143	Too-Many
TCGA.EI.6882	17	6887	81048658	20118	0.015	NEUTRAL	NA	1143	Too-Many
TCGA.EI.6917	17	6887	81048658	20090	-0.0558	NEUTRAL	NA	1143	Too-Many
TCGA.F4.6459	17	6887	81048658	20158	-0.0588	NEUTRAL	NA	1143	Too-Many
TCGA.F4.6463	17	6887	81048658	20147	-0.0454	NEUTRAL	NA	1143	Too-Many
TCGA.F4.6569	17	6887	81048658	20163	-0.049	NEUTRAL	NA	1143	Too-Many
TCGA.F4.6703	17	6887	81048658	20125	-0.0186	NEUTRAL	NA	1143	Too-Many
TCGA.F4.6806	17	6887	81048658	20049	-0.0229	NEUTRAL	NA	1143	Too-Many
TCGA.F4.6854	17	6887	81048658	20113	-0.0044	NEUTRAL	NA	1143	Too-Many
TCGA.F4.6855	17	6887	81048658	20097	0.0044	NEUTRAL	NA	1143	Too-Many
TCGA.F4.6856	17	6887	81048658	20121	0.0159	NEUTRAL	NA	1143	Too-Many
TCGA.F5.6812	17	6887	81048658	20114	-0.1115	NEUTRAL	NA	1143	Too-Many
TCGA.F5.6814	17	6887	81048658	20113	-0.0859	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6293	17	6887	81048658	20136	-0.0492	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6294	17	6887	81048658	20157	-0.0561	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6304	17	6887	81048658	20120	-0.0341	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6309	17	6887	81048658	20120	0.0131	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6321	17	6887	81048658	20160	0.0067	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6323	17	6887	81048658	20157	-0.0245	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6586	17	6887	81048658	20161	-0.0474	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6588	17	6887	81048658	20154	-0.0378	NEUTRAL	NA	1143	Too-Many
TCGA.G4.6628	17	6887	81048658	20113	0.006	NEUTRAL	NA	1143	Too-Many
TCGA.G5.6572	17	6887	81048658	20117	-0.0093	NEUTRAL	NA	1143	Too-Many
TCGA.G5.6641	17	6887	81048658	20114	0.0349	NEUTRAL	NA	1143	Too-Many
TCGA.NH.A50T	17	6887	81048658	19986	-0.02	NEUTRAL	NA	1143	Too-Many
TCGA.NH.A50U	17	6887	81048658	20151	-0.3722	NEUTRAL	NA	1143	Too-Many
TCGA.NH.A5IV	17	6887	81048658	20122	0.0371	NEUTRAL	NA	1143	Too-Many
TCGA.WS.AB45	17	6887	81048658	20141	-0.0198	NEUTRAL	NA	1143	Too-Many
TCGA.AA.A004.01A	17	13862	21207689	2371	-0.3126	NEUTRAL	NA	322	Too-Many
TCGA.AA.A00Q.01A	17	63577	131506	5	-0.1357	NEUTRAL	NA	1	RPH3AL
TCGA.AA.A00A.01A	17	63577	171035	6	-0.0946	NEUTRAL	NA	1	RPH3AL
TCGA.AG.4009.01A	17	63577	177196	6	-0.1185	NEUTRAL	NA	1	RPH3AL
TCGA.AA.A010.01A	17	63577	260094	9	0.3008	NEUTRAL	NA	2	"LOC100506388,RPH3AL"
TCGA.AA.A01Q.01A	17	63577	455062	16	0.1069	NEUTRAL	NA	5	"C17orf97,FAM101B,LOC100506388,RPH3AL,VPS53"
TCGA.AG.3909.01A	17	63577	465704	17	-0.3302	NEUTRAL	NA	5	"C17orf97,FAM101B,LOC100506388,RPH3AL,VPS53"
TCGA.AG.3891.01A	17	63577	976803	70	-0.265	NEUTRAL	NA	12	"ABR,C17orf97,FAM101B,FAM57A,GEMIN4,GLOD4,LOC100506388,NXN,RNMTL1,RPH3AL,TIMM22,VPS53"
TCGA.AA.A024.01A	17	63577	1687568	183	0.1326	NEUTRAL	NA	28	"ABR,BHLHA9,C17orf97,CRK,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,PITPNA,PRPF8,RILP,RNMTL1,RPH3AL,SCARF1,SERPINF1,SERPINF2,SLC43A2,SMYD4,TIMM22,TLCD2,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AG.A01L.01A	17	63577	2239572	238	-0.4476	NEUTRAL	NA	36	"ABR,BHLHA9,C17orf97,CRK,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.A01F.01A	17	63577	2246775	252	0.1306	NEUTRAL	NA	37	"ABR,BHLHA9,C17orf97,CRK,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AG.A015.01A	17	63577	2246775	232	-0.2408	NEUTRAL	NA	37	"ABR,BHLHA9,C17orf97,CRK,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.A01C.01A	17	63577	4544760	596	-0.292	NEUTRAL	NA	77	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AF.3914.01A	17	63577	4607111	677	-0.2546	NEUTRAL	NA	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PELP1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AG.A025.01A	17	63577	4624197	624	-0.3257	NEUTRAL	NA	79	"ABR,ALOX15,ANKFY1,ARRB2,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PELP1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AG.A008.01A	17	63577	4994749	769	-0.1153	NEUTRAL	NA	101	Too-Many
TCGA.AG.A00C.01A	17	63577	5114049	798	-0.3354	NEUTRAL	NA	105	Too-Many
TCGA.AA.A00D.01A	17	63577	5436561	732	0.1437	NEUTRAL	NA	114	Too-Many
TCGA.AG.3611.01A	17	63577	6441268	790	-0.4655	NEUTRAL	NA	118	Too-Many
TCGA.AG.A00Y.01A	17	63577	12914933	1963	-0.2596	NEUTRAL	NA	238	Too-Many
TCGA.AA.A00L.01A	17	63577	19247040	2160	-0.1864	NEUTRAL	NA	303	Too-Many
TCGA.AA.A017.01A	17	63577	81006295	8177	-0.1504	NEUTRAL	NA	1141	Too-Many
TCGA.AG.A02X.01A	17	63577	81042842	8723	-0.4062	NEUTRAL	NA	1142	Too-Many
TCGA.AA.A00J.01A	17	63577	81050855	7715	0.0991	NEUTRAL	NA	1142	Too-Many
TCGA.AA.A00K.01A	17	63577	81050855	7623	0.3232	NEUTRAL	NA	1142	Too-Many
TCGA.AA.A02W.01A	17	69372	1559675	120	-0.4206	NEUTRAL	NA	23	"ABR,BHLHA9,C17orf97,CRK,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,PITPNA,PRPF8,RILP,RNMTL1,RPH3AL,SCARF1,SLC43A2,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.AG.A016.01A	17	69372	2246775	235	-0.123	NEUTRAL	NA	37	"ABR,BHLHA9,C17orf97,CRK,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AG.A032.01A	17	69372	6553254	826	0.0016	NEUTRAL	NA	121	Too-Many
TCGA.AA.A01D.01A	17	69372	8216760	1330	-0.514	NEUTRAL	NA	202	Too-Many
TCGA.AG.A011.01A	17	69372	21826060	2582	-0.2511	NEUTRAL	NA	324	Too-Many
TCGA.AG.A014.01A	17	69372	21826060	2587	-0.3965	NEUTRAL	NA	324	Too-Many
TCGA.AA.A01K.01A	17	69372	25621341	2443	-0.3737	NEUTRAL	NA	326	Too-Many
TCGA.AA.A02R.01A	17	69372	39882043	4121	-0.0439	NEUTRAL	NA	599	Too-Many
TCGA.AA.A01I.01A	17	69372	39969245	4383	-0.2594	NEUTRAL	NA	602	Too-Many
TCGA.AA.A029.01A	17	69372	81042842	8111	-0.3726	NEUTRAL	NA	1142	Too-Many
TCGA.AG.A02G.01A	17	69372	81051974	8604	-0.1429	NEUTRAL	NA	1142	Too-Many
TCGA.AA.3488	17	102208	21527045	5934	-0.4655	NEUTRAL	NA	324	Too-Many
TCGA.AM.5820	17	119381	175562	15	0.0683	NEUTRAL	NA	1	RPH3AL
TCGA.AA.A00Q.01A	17	169162	2303879	276	0.3371	NEUTRAL	NA	38	"ABR,BHLHA9,C17orf97,CRK,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,MNT,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.A01Q.01A	17	456565	976803	60	-0.3027	NEUTRAL	NA	8	"ABR,FAM57A,GEMIN4,GLOD4,NXN,RNMTL1,TIMM22,VPS53"
TCGA.AG.4009.01A	17	531290	617826	8	-0.2287	NEUTRAL	NA	1	VPS53
TCGA.AG.4009.01A	17	673052	1374313	55	-0.3554	NEUTRAL	NA	10	"ABR,BHLHA9,CRK,GLOD4,MYO1C,NXN,RNMTL1,TIMM22,TUSC5,YWHAE"
TCGA.AA.3870	17	861532	4538499	885	0.1476	NEUTRAL	NA	68	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DPH1,EMC6,GGT6,GSG2,HIC1,INPP5K,ITGAE,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RPA1,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,WDR81,YWHAE,ZZEF1"
TCGA.AA.3986	17	861532	71035612	17405	0.0439	NEUTRAL	NA	937	Too-Many
TCGA.AG.A01W.01A	17	905967	1488799	77	-0.4674	NEUTRAL	NA	9	"ABR,BHLHA9,CRK,INPP5K,MYO1C,PITPNA,SLC43A2,TUSC5,YWHAE"
TCGA.AA.A00N.01A	17	961935	1382673	37	-0.3262	NEUTRAL	NA	6	"ABR,BHLHA9,CRK,MYO1C,TUSC5,YWHAE"
TCGA.AG.3891.01A	17	986713	2808523	248	0.0025	NEUTRAL	NA	31	"ABR,BHLHA9,CLUH,CRK,DPH1,HIC1,INPP5K,METTL16,MNT,MYO1C,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RPA1,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TLCD2,TSR1,TUSC5,WDR81,YWHAE"
TCGA.AA.A01Q.01A	17	1028467	1373427	16	0.0238	NEUTRAL	NA	6	"ABR,BHLHA9,CRK,MYO1C,TUSC5,YWHAE"
TCGA.A6.6652	17	1032276	7560834	1752	-0.0788	NEUTRAL	NA	164	Too-Many
TCGA.CM.5862	17	1238860	81048658	19863	-0.2055	NEUTRAL	NA	1128	Too-Many
TCGA.EI.6512	17	1310246	81048658	19884	-0.0719	NEUTRAL	NA	1127	Too-Many
TCGA.AA.A01Q.01A	17	1374313	1586775	80	-0.4472	NEUTRAL	NA	7	"INPP5K,MYO1C,PITPNA,PRPF8,RILP,SCARF1,SLC43A2"
TCGA.AG.4009.01A	17	1410236	1519809	23	-0.4047	NEUTRAL	NA	3	"INPP5K,PITPNA,SLC43A2"
TCGA.AG.3906.01A	17	1411362	1442117	9	-0.4216	NEUTRAL	NA	2	"INPP5K,PITPNA"
TCGA.AG.3906.01A	17	1444801	1616946	45	0.0931	NEUTRAL	NA	6	"PITPNA,PRPF8,RILP,SCARF1,SLC43A2,TLCD2"
TCGA.CM.6163	17	1445569	34443799	8008	-0.0211	NEUTRAL	NA	430	Too-Many
TCGA.AA.A00N.01A	17	1465748	1552071	27	-0.411	NEUTRAL	NA	4	"PITPNA,RILP,SCARF1,SLC43A2"
TCGA.AG.A01W.01A	17	1489632	1503550	11	0.3709	NEUTRAL	NA	1	SLC43A2
TCGA.AA.3861.01A	17	1494089	1775673	77	0.1281	NEUTRAL	NA	10	"PRPF8,RILP,RPA1,SCARF1,SERPINF1,SERPINF2,SLC43A2,SMYD4,TLCD2,WDR81"
TCGA.AG.A01W.01A	17	1505346	1727229	77	-0.4874	NEUTRAL	NA	9	"PRPF8,RILP,SCARF1,SERPINF1,SERPINF2,SLC43A2,SMYD4,TLCD2,WDR81"
TCGA.AA.A02W.01A	17	1562609	3591879	241	-0.3712	NEUTRAL	NA	39	"ASPA,CLUH,CTNS,DPH1,EMC6,HIC1,METTL16,MNT,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX5,PAFAH1B1,PRPF8,RAP1GAP2,RPA1,RTN4RL1,SERPINF1,SERPINF2,SGSM2,SHPK,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TLCD2,TRPV1,TRPV3,TSR1,WDR81"
TCGA.AG.3909.01A	17	1587718	1650575	10	-0.0689	NEUTRAL	NA	4	"PRPF8,SERPINF2,TLCD2,WDR81"
TCGA.AA.A00Z.01A	17	1616946	7702370	91	-0.2872	NEUTRAL	NA	155	Too-Many
TCGA.AG.3605.01A	17	1616946	70119637	254	-0.1257	NEUTRAL	NA	921	Too-Many
TCGA.AA.A00N.01A	17	1628202	1635913	6	-0.4663	NEUTRAL	NA	1	WDR81
TCGA.AA.A010.01A	17	1628202	1655829	16	-0.0455	NEUTRAL	NA	2	"SERPINF2,WDR81"
TCGA.AG.4009.01A	17	1634009	1839771	43	-0.2134	NEUTRAL	NA	6	"RPA1,RTN4RL1,SERPINF1,SERPINF2,SMYD4,WDR81"
TCGA.AA.A00N.01A	17	1636819	1707873	26	0.2323	NEUTRAL	NA	4	"SERPINF1,SERPINF2,SMYD4,WDR81"
TCGA.AA.A01Q.01A	17	1650575	2265355	81	-0.1002	NEUTRAL	NA	12	"DPH1,HIC1,OVCA2,RPA1,RTN4RL1,SERPINF1,SERPINF2,SGSM2,SMG6,SMYD4,SRR,TSR1"
TCGA.A6.3808.01A	17	1657385	3635625	281	-0.2667	NEUTRAL	NA	38	"ASPA,CLUH,CTNS,DPH1,EMC6,GSG2,HIC1,ITGAE,METTL16,MNT,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX5,PAFAH1B1,RAP1GAP2,RPA1,RTN4RL1,SERPINF1,SERPINF2,SGSM2,SHPK,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TRPV1,TRPV3,TSR1"
TCGA.F4.6460	17	1700081	81048658	19820	-0.3558	NEUTRAL	NA	1115	Too-Many
TCGA.AA.A024.01A	17	1715228	1791920	14	-0.1749	NEUTRAL	NA	2	"RPA1,SMYD4"
TCGA.AA.A00N.01A	17	1715228	1972040	41	-0.3848	NEUTRAL	NA	7	"DPH1,HIC1,OVCA2,RPA1,RTN4RL1,SMG6,SMYD4"
TCGA.AG.A01W.01A	17	1728973	1891096	18	-0.084	NEUTRAL	NA	3	"RPA1,RTN4RL1,SMYD4"
TCGA.AA.A024.01A	17	1839771	2595618	92	0.1278	NEUTRAL	NA	12	"CLUH,DPH1,HIC1,METTL16,MNT,OVCA2,PAFAH1B1,RTN4RL1,SGSM2,SMG6,SRR,TSR1"
TCGA.AG.A01W.01A	17	1891509	2211655	46	-0.4778	NEUTRAL	NA	6	"DPH1,HIC1,OVCA2,RTN4RL1,SMG6,SRR"
TCGA.AG.3906.01A	17	1943495	1968755	4	0.2862	NEUTRAL	NA	4	"DPH1,HIC1,OVCA2,SMG6"
TCGA.AG.3909.01A	17	1959526	2186869	15	-0.0714	NEUTRAL	NA	2	"HIC1,SMG6"
TCGA.AA.3861.01A	17	1959984	2935613	126	-0.1767	NEUTRAL	NA	10	"CLUH,HIC1,METTL16,MNT,PAFAH1B1,RAP1GAP2,SGSM2,SMG6,SRR,TSR1"
TCGA.AG.4009.01A	17	1985066	2147906	7	-0.2909	NEUTRAL	NA	1	SMG6
TCGA.AA.A010.01A	17	2075920	2206903	14	0.1198	NEUTRAL	NA	1	SMG6
TCGA.AG.A01W.01A	17	2212126	2244938	23	0.2309	NEUTRAL	NA	3	"SGSM2,SRR,TSR1"
TCGA.AG.3906.01A	17	2218826	2246775	19	0.2567	NEUTRAL	NA	3	"SGSM2,SRR,TSR1"
TCGA.AG.3909.01A	17	2239281	3352099	98	-0.4402	NEUTRAL	NA	18	"CLUH,METTL16,MNT,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,PAFAH1B1,RAP1GAP2,SGSM2,SPATA22,TSR1"
TCGA.AG.A01L.01A	17	2246775	2279394	12	0.2796	NEUTRAL	NA	1	SGSM2
TCGA.AG.3906.01A	17	2264882	2577317	39	-0.1786	NEUTRAL	NA	4	"METTL16,MNT,PAFAH1B1,SGSM2"
TCGA.AA.A01F.01A	17	2276209	5036184	415	0.1193	NEUTRAL	NA	67	"ALOX15,ANKFY1,ARRB2,ASPA,ATP2A3,C17orf107,C17orf85,CAMKK1,CAMTA2,CHRNE,CLUH,CTNS,CXCL16,CYB5D2,EMC6,ENO3,GGT6,GLTPD2,GP1BA,GSG2,INCA1,ITGAE,KIF1C,MED11,METTL16,MINK1,MNT,MYBBP1A,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,P2RX1,P2RX5,PAFAH1B1,PELP1,PFN1,PLD2,PSMB6,RAP1GAP2,RNF167,SGSM2,SHPK,SLC25A11,SLC52A1,SMTNL2,SPAG7,SPATA22,SPNS2,SPNS3,TAX1BP3,TM4SF5,TRPV1,TRPV3,UBE2G1,USP6,VMO1,ZFP3,ZMYND15,ZNF232,ZZEF1"
TCGA.AA.3930.01A	17	2278804	3558243	145	-0.299	NEUTRAL	NA	22	"ASPA,CLUH,CTNS,METTL16,MNT,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,PAFAH1B1,RAP1GAP2,SGSM2,SHPK,SPATA22,TRPV1,TRPV3"
TCGA.AG.A01L.01A	17	2279969	3618092	142	-0.4827	NEUTRAL	NA	26	"ASPA,CLUH,CTNS,EMC6,ITGAE,METTL16,MNT,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,P2RX5,PAFAH1B1,RAP1GAP2,SGSM2,SHPK,SPATA22,TAX1BP3,TRPV1,TRPV3"
TCGA.AG.A016.01A	17	2282310	4624197	360	-0.0685	NEUTRAL	NA	43	"ALOX15,ANKFY1,ARRB2,ASPA,ATP2A3,C17orf85,CAMKK1,CLUH,CTNS,CYB5D2,EMC6,GGT6,GSG2,ITGAE,METTL16,MNT,MYBBP1A,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,P2RX1,P2RX5,PAFAH1B1,PELP1,RAP1GAP2,SGSM2,SHPK,SMTNL2,SPATA22,SPNS2,SPNS3,TAX1BP3,TRPV1,TRPV3,UBE2G1,ZZEF1"
TCGA.AA.A01Q.01A	17	2290145	2303879	6	-0.5	NEUTRAL	NA	1	MNT
TCGA.AG.A015.01A	17	2290145	4436234	295	-0.1311	NEUTRAL	NA	36	"ANKFY1,ASPA,ATP2A3,C17orf85,CAMKK1,CLUH,CTNS,CYB5D2,EMC6,GSG2,ITGAE,METTL16,MNT,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,P2RX1,P2RX5,PAFAH1B1,RAP1GAP2,SHPK,SPATA22,SPNS2,SPNS3,TAX1BP3,TRPV1,TRPV3,UBE2G1,ZZEF1"
TCGA.D5.6533	17	2336369	3327811	246	0.1284	NEUTRAL	NA	13	"CLUH,METTL16,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1G1,OR3A1,OR3A2,OR3A3,PAFAH1B1,RAP1GAP2"
TCGA.AA.A01Q.01A	17	2541502	2584972	9	0.0876	NEUTRAL	NA	1	PAFAH1B1
TCGA.AG.A01W.01A	17	2551196	3498832	99	-0.3537	NEUTRAL	NA	17	"ASPA,CLUH,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,PAFAH1B1,RAP1GAP2,SPATA22,TRPV1,TRPV3"
TCGA.AZ.4684.01A	17	2573419	3336145	63	-0.5099	NEUTRAL	NA	12	"CLUH,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1G1,OR3A1,OR3A2,OR3A3,PAFAH1B1,RAP1GAP2"
TCGA.AG.3906.01A	17	2579747	2651322	8	0.3422	NEUTRAL	NA	2	"CLUH,PAFAH1B1"
TCGA.AA.A024.01A	17	2651322	3552082	86	0.0339	NEUTRAL	NA	17	"ASPA,CTNS,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,RAP1GAP2,SHPK,SPATA22,TRPV1,TRPV3"
TCGA.AA.3867	17	2678931	21709232	5426	-0.4379	NEUTRAL	NA	283	Too-Many
TCGA.AG.4009.01A	17	2703748	3213616	29	-0.2559	NEUTRAL	NA	8	"OR1A1,OR1A2,OR1D2,OR1D5,OR1G1,OR3A1,OR3A2,RAP1GAP2"
TCGA.AG.3891.01A	17	2860972	3336145	32	-0.4797	NEUTRAL	NA	10	"OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1G1,OR3A1,OR3A2,OR3A3,RAP1GAP2"
TCGA.AA.A010.01A	17	2934158	3421832	33	0.0404	NEUTRAL	NA	14	"ASPA,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,RAP1GAP2,SPATA22,TRPV3"
TCGA.CK.5914.01A	17	2965941	3336145	14	-0.1018	NEUTRAL	NA	9	"OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1G1,OR3A1,OR3A2,OR3A3"
TCGA.AA.3850	17	2978186	3418553	147	0.09145	NEUTRAL	NA	12	"ASPA,OR1A1,OR1A2,OR1D2,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,SPATA22,TRPV3"
TCGA.AG.3891.01A	17	3343404	3552082	52	-0.1155	NEUTRAL	NA	6	"ASPA,CTNS,SHPK,SPATA22,TRPV1,TRPV3"
TCGA.AA.A01Q.01A	17	3349724	3533459	41	-0.098	NEUTRAL	NA	5	"ASPA,SHPK,SPATA22,TRPV1,TRPV3"
TCGA.AA.3862.01A	17	3352099	4496177	283	-0.4335	NEUTRAL	NA	24	"ANKFY1,ASPA,ATP2A3,C17orf85,CAMKK1,CTNS,CYB5D2,EMC6,GGT6,GSG2,ITGAE,MYBBP1A,P2RX1,P2RX5,SHPK,SMTNL2,SPATA22,SPNS2,SPNS3,TAX1BP3,TRPV1,TRPV3,UBE2G1,ZZEF1"
TCGA.AA.3861.01A	17	3352099	8363320	1249	-0.1091	NEUTRAL	NA	155	Too-Many
TCGA.AA.A00Q.01A	17	3352099	9086163	1122	0.1705	NEUTRAL	NA	162	Too-Many
TCGA.AG.4009.01A	17	3392482	3783588	103	-0.2836	NEUTRAL	NA	12	"ASPA,C17orf85,CAMKK1,CTNS,EMC6,GSG2,ITGAE,P2RX5,SHPK,TAX1BP3,TRPV1,TRPV3"
TCGA.CK.6748	17	3394298	20630546	5069	-0.4539	NEUTRAL	NA	262	Too-Many
TCGA.AA.A00N.01A	17	3397592	3539329	39	-0.2279	NEUTRAL	NA	4	"ASPA,SHPK,TRPV1,TRPV3"
TCGA.CI.6621	17	3494867	25343370	5223	-0.3462	NEUTRAL	NA	270	Too-Many
TCGA.AG.A01W.01A	17	3505002	3545866	21	0.3148	NEUTRAL	NA	3	"CTNS,SHPK,TRPV1"
TCGA.AA.A010.01A	17	3543432	3623561	29	-0.4571	NEUTRAL	NA	5	"CTNS,EMC6,ITGAE,P2RX5,TAX1BP3"
TCGA.AA.3848	17	3578646	11105001	2383	-0.3301	NEUTRAL	NA	171	Too-Many
TCGA.AA.A024.01A	17	3582837	3802896	63	-0.0056	NEUTRAL	NA	6	"C17orf85,CAMKK1,GSG2,ITGAE,P2RX1,P2RX5"
TCGA.AA.3930.01A	17	3592749	3717587	39	-0.2579	NEUTRAL	NA	4	"C17orf85,GSG2,ITGAE,P2RX5"
TCGA.AG.3891.01A	17	3593307	3651177	21	0.1667	NEUTRAL	NA	3	"GSG2,ITGAE,P2RX5"
TCGA.AG.3909.01A	17	3593680	3599124	4	0.1017	NEUTRAL	NA	1	P2RX5
TCGA.AA.3850	17	3603912	10324979	2115	0.35495	NEUTRAL	NA	162	Too-Many
TCGA.AG.A01W.01A	17	3605808	3610164	5	0.2733	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	3611100	3794708	58	-0.4221	NEUTRAL	NA	4	"C17orf85,CAMKK1,GSG2,ITGAE"
TCGA.AA.A02W.01A	17	3618092	18874287	1973	-0.324	NEUTRAL	NA	235	Too-Many
TCGA.AA.A010.01A	17	3626529	3643034	10	0.0402	NEUTRAL	NA	2	"GSG2,ITGAE"
TCGA.AG.A01L.01A	17	3632724	4864028	297	-0.478	NEUTRAL	NA	34	"ALOX15,ANKFY1,ARRB2,ATP2A3,C17orf107,C17orf85,CAMKK1,CHRNE,CXCL16,CYB5D2,ENO3,GGT6,GLTPD2,GP1BA,ITGAE,MED11,MINK1,MYBBP1A,P2RX1,PELP1,PFN1,PLD2,PSMB6,RNF167,SLC25A11,SMTNL2,SPAG7,SPNS2,SPNS3,TM4SF5,UBE2G1,VMO1,ZMYND15,ZZEF1"
TCGA.A6.3808.01A	17	3638080	4712394	274	0.3596	NEUTRAL	NA	25	"ALOX15,ANKFY1,ARRB2,ATP2A3,C17orf85,CAMKK1,CXCL16,CYB5D2,GGT6,GLTPD2,ITGAE,MED11,MYBBP1A,P2RX1,PELP1,PLD2,PSMB6,SMTNL2,SPNS2,SPNS3,TM4SF5,UBE2G1,VMO1,ZMYND15,ZZEF1"
TCGA.CK.5912	17	3640306	7656324	1150	-0.3805	NEUTRAL	NA	117	Too-Many
TCGA.AA.A00N.01A	17	3643034	3725200	26	-0.2779	NEUTRAL	NA	2	"C17orf85,ITGAE"
TCGA.AG.3891.01A	17	3653619	3783588	28	-0.1622	NEUTRAL	NA	3	"C17orf85,CAMKK1,ITGAE"
TCGA.CK.5914.01A	17	3664697	3716306	6	0.0456	NEUTRAL	NA	2	"C17orf85,ITGAE"
TCGA.AA.A01Q.01A	17	3664697	3725200	11	0.1388	NEUTRAL	NA	2	"C17orf85,ITGAE"
TCGA.AA.3930.01A	17	3719401	3786649	23	0.0876	NEUTRAL	NA	2	"C17orf85,CAMKK1"
TCGA.AA.A010.01A	17	3721519	3772750	13	-0.0389	NEUTRAL	NA	2	"C17orf85,CAMKK1"
TCGA.AA.A00N.01A	17	3749306	3935383	60	-0.4667	NEUTRAL	NA	5	"ATP2A3,C17orf85,CAMKK1,P2RX1,ZZEF1"
TCGA.AG.3906.01A	17	3775787	3831204	20	0.2094	NEUTRAL	NA	3	"ATP2A3,CAMKK1,P2RX1"
TCGA.AG.3891.01A	17	3785534	3856586	29	0.2174	NEUTRAL	NA	3	"ATP2A3,CAMKK1,P2RX1"
TCGA.AA.3930.01A	17	3787107	4692756	220	-0.4237	NEUTRAL	NA	21	"ALOX15,ANKFY1,ARRB2,ATP2A3,CAMKK1,CXCL16,CYB5D2,GGT6,GLTPD2,MED11,MYBBP1A,P2RX1,PELP1,SMTNL2,SPNS2,SPNS3,TM4SF5,UBE2G1,VMO1,ZMYND15,ZZEF1"
TCGA.AG.A01W.01A	17	3797413	3867415	14	0.1551	NEUTRAL	NA	2	"ATP2A3,P2RX1"
TCGA.AG.4009.01A	17	3806838	3840693	11	-0.4081	NEUTRAL	NA	2	"ATP2A3,P2RX1"
TCGA.AA.A024.01A	17	3807171	4686110	188	0.0054	NEUTRAL	NA	18	"ALOX15,ANKFY1,ARRB2,ATP2A3,CXCL16,CYB5D2,GGT6,MED11,MYBBP1A,P2RX1,PELP1,SMTNL2,SPNS2,SPNS3,TM4SF5,UBE2G1,ZMYND15,ZZEF1"
TCGA.AG.A01W.01A	17	3869665	4006898	47	-0.3451	NEUTRAL	NA	1	ZZEF1
TCGA.AG.3891.01A	17	3910124	4692756	184	-0.2168	NEUTRAL	NA	18	"ALOX15,ANKFY1,ARRB2,CXCL16,CYB5D2,GGT6,GLTPD2,MED11,MYBBP1A,PELP1,SMTNL2,SPNS2,SPNS3,TM4SF5,UBE2G1,VMO1,ZMYND15,ZZEF1"
TCGA.AA.A01Q.01A	17	3912116	4439324	81	0.2183	NEUTRAL	NA	6	"ANKFY1,CYB5D2,SPNS2,SPNS3,UBE2G1,ZZEF1"
TCGA.AG.4009.01A	17	3912871	4109589	72	-0.3045	NEUTRAL	NA	3	"ANKFY1,CYB5D2,ZZEF1"
TCGA.CK.5914.01A	17	3919568	3979934	28	-0.3621	NEUTRAL	NA	1	ZZEF1
TCGA.AG.3909.01A	17	3928171	4045828	41	-0.1699	NEUTRAL	NA	1	ZZEF1
TCGA.CK.5914.01A	17	3981159	4045828	19	0.1589	NEUTRAL	NA	1	ZZEF1
TCGA.AA.A010.01A	17	3981159	4098631	40	0.2518	NEUTRAL	NA	3	"ANKFY1,CYB5D2,ZZEF1"
TCGA.AG.A01W.01A	17	4017776	4033820	13	0.1921	NEUTRAL	NA	1	ZZEF1
TCGA.AG.A01W.01A	17	4034826	4639497	117	-0.3487	NEUTRAL	NA	14	"ALOX15,ANKFY1,ARRB2,CXCL16,CYB5D2,GGT6,MED11,MYBBP1A,PELP1,SMTNL2,SPNS2,SPNS3,UBE2G1,ZZEF1"
TCGA.AA.A00N.01A	17	4047010	4210264	33	-0.2546	NEUTRAL	NA	3	"ANKFY1,CYB5D2,UBE2G1"
TCGA.AG.3906.01A	17	4109589	4692756	110	-0.4042	NEUTRAL	NA	16	"ALOX15,ANKFY1,ARRB2,CXCL16,GGT6,GLTPD2,MED11,MYBBP1A,PELP1,SMTNL2,SPNS2,SPNS3,TM4SF5,UBE2G1,VMO1,ZMYND15"
TCGA.AG.3909.01A	17	4139016	4434295	21	-0.36	NEUTRAL	NA	4	"ANKFY1,SPNS2,SPNS3,UBE2G1"
TCGA.CK.5914.01A	17	4145509	4381801	15	-0.3504	NEUTRAL	NA	3	"ANKFY1,SPNS3,UBE2G1"
TCGA.AG.4009.01A	17	4167132	4448314	31	-0.1274	NEUTRAL	NA	5	"ANKFY1,MYBBP1A,SPNS2,SPNS3,UBE2G1"
TCGA.AA.A010.01A	17	4433875	4586088	54	-0.1463	NEUTRAL	NA	6	"ALOX15,GGT6,MYBBP1A,PELP1,SMTNL2,SPNS2"
TCGA.AG.A015.01A	17	4457063	4463647	6	-0.1487	NEUTRAL	NA	2	"GGT6,MYBBP1A"
TCGA.AA.A01Q.01A	17	4458107	4607111	29	-0.0754	NEUTRAL	NA	5	"ALOX15,GGT6,MYBBP1A,PELP1,SMTNL2"
TCGA.AG.A015.01A	17	4495603	4510626	5	0.2992	NEUTRAL	NA	1	SMTNL2
TCGA.AA.3862.01A	17	4497093	8363320	977	-0.0851	NEUTRAL	NA	132	Too-Many
TCGA.CL.4957	17	4517265	6798377	771	-0.0745	NEUTRAL	NA	50	"AIPL1,ALOX15,ARRB2,C17orf100,C17orf107,C1QBP,CAMTA2,CHRNE,CXCL16,DERL2,DHX33,ENO3,FAM64A,FBXO39,GLTPD2,GP1BA,INCA1,KIAA0753,KIF1C,LOC728392,MED11,MED31,MINK1,MIS12,NLRP1,NUP88,PELP1,PFN1,PITPNM3,PLD2,PSMB6,RABEP1,RNF167,RPAIN,SCIMP,SLC13A5,SLC25A11,SLC52A1,SPAG7,TEKT1,TM4SF5,TXNDC17,USP6,VMO1,WSCD1,XAF1,ZFP3,ZMYND15,ZNF232,ZNF594"
TCGA.AG.A015.01A	17	4534868	4618227	22	-0.3227	NEUTRAL	NA	3	"ALOX15,ARRB2,PELP1"
TCGA.AA.3870	17	4540646	18876595	4540	-0.4908	NEUTRAL	NA	221	Too-Many
TCGA.AH.6643	17	4540646	25402268	4953	-0.4139	NEUTRAL	NA	249	Too-Many
TCGA.D5.6536	17	4540646	81048658	19093	-0.0373	NEUTRAL	NA	1066	Too-Many
TCGA.A6.A56B	17	4550188	7172630	814	-0.0378	NEUTRAL	NA	66	"ACADVL,AIPL1,ALOX12,ARRB2,ASGR1,ASGR2,BCL6B,C17orf100,C17orf107,C17orf49,C1QBP,CAMTA2,CHRNE,CLDN7,CLEC10A,CTDNEP1,CXCL16,DERL2,DHX33,DLG4,DVL2,ELP5,ENO3,FAM64A,FBXO39,GABARAP,GLTPD2,GP1BA,INCA1,KIAA0753,KIF1C,LOC728392,MED11,MED31,MINK1,MIS12,NLRP1,NUP88,PELP1,PFN1,PHF23,PITPNM3,PLD2,PSMB6,RABEP1,RNASEK,RNF167,RPAIN,SCIMP,SLC13A5,SLC16A11,SLC16A13,SLC25A11,SLC52A1,SPAG7,TEKT1,TM4SF5,TXNDC17,USP6,VMO1,WSCD1,XAF1,ZFP3,ZMYND15,ZNF232,ZNF594"
TCGA.AG.A015.01A	17	4623456	4714047	30	-0.1386	NEUTRAL	NA	9	"ARRB2,CXCL16,GLTPD2,MED11,PLD2,PSMB6,TM4SF5,VMO1,ZMYND15"
TCGA.AG.A016.01A	17	4636293	4692756	21	0.1628	NEUTRAL	NA	6	"CXCL16,GLTPD2,MED11,TM4SF5,VMO1,ZMYND15"
TCGA.AG.A025.01A	17	4636293	8633397	939	-0.3919	NEUTRAL	NA	130	Too-Many
TCGA.AA.A01Q.01A	17	4646558	4837240	42	-0.1463	NEUTRAL	NA	10	"C17orf107,CHRNE,GLTPD2,GP1BA,MINK1,PLD2,PSMB6,TM4SF5,VMO1,ZMYND15"
TCGA.AA.3664	17	4660507	72635905	17098	0.0082	NEUTRAL	NA	885	Too-Many
TCGA.AA.A024.01A	17	4692267	7798610	692	0.1047	NEUTRAL	NA	100	"ACADVL,ACAP1,AIPL1,ALOX12,ASGR1,ASGR2,ATP1B2,BCL6B,C17orf100,C17orf107,C17orf49,C17orf74,C1QBP,CAMTA2,CD68,CHD3,CHRNB1,CHRNE,CLDN7,CLEC10A,CTDNEP1,CYB5D1,DERL2,DHX33,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,ENO3,FAM64A,FBXO39,FGF11,FXR2,GABARAP,GLTPD2,GP1BA,GPS2,INCA1,KCTD11,KDM6B,KIAA0753,KIF1C,LOC728392,MED31,MINK1,MIS12,MPDU1,NAA38,NEURL4,NLGN2,NLRP1,NUP88,PFN1,PHF23,PITPNM3,PLD2,PLSCR3,POLR2A,PSMB6,RABEP1,RNASEK,RNF167,RPAIN,SAT2,SCIMP,SENP3,SHBG,SLC13A5,SLC16A11,SLC16A13,SLC25A11,SLC2A4,SLC35G6,SLC52A1,SOX15,SPAG7,SPEM1,TEKT1,TMEM102,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TXNDC17,USP6,WRAP53,WSCD1,XAF1,YBX2,ZBTB4,ZFP3,ZNF232,ZNF594"
TCGA.AA.3930.01A	17	4699449	4725906	18	0.0537	NEUTRAL	NA	2	"PLD2,PSMB6"
TCGA.AG.A016.01A	17	4699958	4722676	15	-0.4469	NEUTRAL	NA	2	"PLD2,PSMB6"
TCGA.AG.3891.01A	17	4699958	4787610	18	0.3547	NEUTRAL	NA	3	"MINK1,PLD2,PSMB6"
TCGA.A6.3808.01A	17	4714047	4725906	12	-0.2132	NEUTRAL	NA	1	PLD2
TCGA.AG.4009.01A	17	4718762	4837240	28	-0.4191	NEUTRAL	NA	5	"C17orf107,CHRNE,GP1BA,MINK1,PLD2"
TCGA.AF.3914.01A	17	4719874	4844156	42	-0.2929	NEUTRAL	NA	7	"C17orf107,CHRNE,GP1BA,MINK1,PLD2,RNF167,SLC25A11"
TCGA.AG.A016.01A	17	4725038	4864028	40	0.0572	NEUTRAL	NA	10	"C17orf107,CHRNE,ENO3,GP1BA,MINK1,PFN1,PLD2,RNF167,SLC25A11,SPAG7"
TCGA.AG.A01W.01A	17	4728395	4800541	45	-0.2564	NEUTRAL	NA	1	MINK1
TCGA.AA.A010.01A	17	4787610	4806244	29	0.1029	NEUTRAL	NA	3	"C17orf107,CHRNE,MINK1"
TCGA.AG.3906.01A	17	4787610	4842317	26	-0.5143	NEUTRAL	NA	5	"C17orf107,CHRNE,GP1BA,MINK1,SLC25A11"
TCGA.AG.A015.01A	17	4787610	4870956	40	-0.1853	NEUTRAL	NA	9	"C17orf107,CHRNE,ENO3,GP1BA,MINK1,PFN1,RNF167,SLC25A11,SPAG7"
TCGA.AG.3891.01A	17	4788154	4844156	29	-0.1729	NEUTRAL	NA	6	"C17orf107,CHRNE,GP1BA,MINK1,RNF167,SLC25A11"
TCGA.AA.3930.01A	17	4799281	4880305	42	-0.1334	NEUTRAL	NA	10	"C17orf107,CAMTA2,CHRNE,ENO3,GP1BA,MINK1,PFN1,RNF167,SLC25A11,SPAG7"
TCGA.A6.3808.01A	17	4800439	4994749	76	0.1614	NEUTRAL	NA	14	"C17orf107,CAMTA2,CHRNE,ENO3,GP1BA,INCA1,KIF1C,MINK1,PFN1,RNF167,SLC25A11,SLC52A1,SPAG7,ZFP3"
TCGA.AG.A01W.01A	17	4826730	4955735	34	-0.2996	NEUTRAL	NA	10	"CAMTA2,ENO3,GP1BA,INCA1,KIF1C,PFN1,RNF167,SLC25A11,SLC52A1,SPAG7"
TCGA.AG.3906.01A	17	4844156	4897654	40	0.1255	NEUTRAL	NA	6	"CAMTA2,ENO3,INCA1,PFN1,RNF167,SPAG7"
TCGA.AG.3891.01A	17	4845638	5009099	62	0.1627	NEUTRAL	NA	10	"CAMTA2,ENO3,INCA1,KIF1C,PFN1,RNF167,SLC52A1,SPAG7,ZFP3,ZNF232"
TCGA.AA.3967.01A	17	4855077	5036771	61	-0.1807	NEUTRAL	NA	9	"CAMTA2,ENO3,INCA1,KIF1C,SLC52A1,SPAG7,USP6,ZFP3,ZNF232"
TCGA.AA.A01Q.01A	17	4862802	4885328	15	-0.2979	NEUTRAL	NA	2	"CAMTA2,SPAG7"
TCGA.AG.4009.01A	17	4870956	4897654	24	-0.4755	NEUTRAL	NA	3	"CAMTA2,INCA1,SPAG7"
TCGA.AG.A015.01A	17	4877633	5012647	39	-0.2168	NEUTRAL	NA	6	"CAMTA2,INCA1,KIF1C,SLC52A1,ZFP3,ZNF232"
TCGA.AA.3930.01A	17	4881767	7100085	308	-0.4634	NEUTRAL	NA	40	"AIPL1,ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,C1QBP,CAMTA2,CLEC10A,DERL2,DHX33,DLG4,FAM64A,FBXO39,INCA1,KIAA0753,KIF1C,LOC728392,MED31,MIS12,NLRP1,NUP88,PITPNM3,RABEP1,RNASEK,RPAIN,SCIMP,SLC13A5,SLC16A11,SLC16A13,SLC52A1,TEKT1,TXNDC17,USP6,WSCD1,XAF1,ZFP3,ZNF232,ZNF594"
TCGA.AG.A016.01A	17	4882992	5033632	38	-0.0242	NEUTRAL	NA	7	"CAMTA2,INCA1,KIF1C,SLC52A1,USP6,ZFP3,ZNF232"
TCGA.AG.A01L.01A	17	4897654	4994749	20	-0.3045	NEUTRAL	NA	4	"INCA1,KIF1C,SLC52A1,ZFP3"
TCGA.A6.3807	17	4906709	21434559	4807	-0.3814	NEUTRAL	NA	226	Too-Many
TCGA.AG.3909.01A	17	4908138	4923770	8	-0.5091	NEUTRAL	NA	1	KIF1C
TCGA.AG.3906.01A	17	4916897	5037175	20	-0.2041	NEUTRAL	NA	5	"KIF1C,SLC52A1,USP6,ZFP3,ZNF232"
TCGA.AA.A00N.01A	17	4923770	4937604	6	-0.3441	NEUTRAL	NA	2	"KIF1C,SLC52A1"
TCGA.AG.A008.01A	17	4996588	5035612	9	0.2782	NEUTRAL	NA	3	"USP6,ZFP3,ZNF232"
TCGA.AG.3891.01A	17	5012201	7297330	368	-0.233	NEUTRAL	NA	52	"ACADVL,ACAP1,AIPL1,ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,C1QBP,CLDN7,CLEC10A,CTDNEP1,DERL2,DHX33,DLG4,DVL2,EIF5A,ELP5,FAM64A,FBXO39,GABARAP,GPS2,KCTD11,KIAA0753,LOC728392,MED31,MIS12,NEURL4,NLRP1,NUP88,PHF23,PITPNM3,PLSCR3,RABEP1,RNASEK,RPAIN,SCIMP,SLC13A5,SLC16A11,SLC16A13,SLC2A4,TEKT1,TMEM95,TNK1,TXNDC17,USP6,WSCD1,XAF1,YBX2,ZNF232,ZNF594"
TCGA.AG.A015.01A	17	5033632	5047945	17	0.2442	NEUTRAL	NA	1	USP6
TCGA.AG.A01L.01A	17	5033907	5045643	15	0.0541	NEUTRAL	NA	1	USP6
TCGA.AG.A016.01A	17	5033907	5048661	17	0.3151	NEUTRAL	NA	1	USP6
TCGA.AG.A008.01A	17	5036184	76447514	7624	-0.1759	NEUTRAL	NA	951	Too-Many
TCGA.AA.A01Q.01A	17	5039121	5440118	82	-0.0486	NEUTRAL	NA	12	"C1QBP,DERL2,DHX33,LOC728392,MIS12,NLRP1,NUP88,RABEP1,RPAIN,SCIMP,USP6,ZNF594"
TCGA.AF.3914.01A	17	5044657	6374444	128	-0.083	NEUTRAL	NA	16	"AIPL1,C1QBP,DERL2,DHX33,FAM64A,LOC728392,MIS12,NLRP1,NUP88,PITPNM3,RABEP1,RPAIN,SCIMP,USP6,WSCD1,ZNF594"
TCGA.AA.A01F.01A	17	5048661	5993610	76	0.0179	NEUTRAL	NA	13	"C1QBP,DERL2,DHX33,LOC728392,MIS12,NLRP1,NUP88,RABEP1,RPAIN,SCIMP,USP6,WSCD1,ZNF594"
TCGA.AG.A015.01A	17	5048661	6364646	116	-0.1944	NEUTRAL	NA	16	"AIPL1,C1QBP,DERL2,DHX33,FAM64A,LOC728392,MIS12,NLRP1,NUP88,PITPNM3,RABEP1,RPAIN,SCIMP,USP6,WSCD1,ZNF594"
TCGA.AG.A016.01A	17	5049269	6364646	116	-0.099	NEUTRAL	NA	16	"AIPL1,C1QBP,DERL2,DHX33,FAM64A,LOC728392,MIS12,NLRP1,NUP88,PITPNM3,RABEP1,RPAIN,SCIMP,USP6,WSCD1,ZNF594"
TCGA.CK.5914.01A	17	5058665	5074829	7	0.0917	NEUTRAL	NA	1	USP6
TCGA.AG.4009.01A	17	5064765	5389339	74	-0.3233	NEUTRAL	NA	9	"C1QBP,DERL2,DHX33,NUP88,RABEP1,RPAIN,SCIMP,USP6,ZNF594"
TCGA.A6.3808.01A	17	5085079	5393368	70	-0.1653	NEUTRAL	NA	9	"C1QBP,DERL2,DHX33,MIS12,NUP88,RABEP1,RPAIN,SCIMP,ZNF594"
TCGA.AG.3909.01A	17	5114049	5298177	28	-0.155	NEUTRAL	NA	3	"NUP88,RABEP1,SCIMP"
TCGA.AA.A00N.01A	17	5124517	5308326	29	0.2564	NEUTRAL	NA	3	"NUP88,RABEP1,SCIMP"
TCGA.CK.5914.01A	17	5284632	5307381	10	-0.2207	NEUTRAL	NA	2	"NUP88,RABEP1"
TCGA.AA.A00N.01A	17	5312022	5323475	6	-0.169	NEUTRAL	NA	2	"NUP88,RPAIN"
TCGA.AG.A00C.01A	17	5335775	5341416	5	0.1257	NEUTRAL	NA	2	"C1QBP,RPAIN"
TCGA.AA.A010.01A	17	5377952	5424793	16	-0.2569	NEUTRAL	NA	4	"DERL2,LOC728392,MIS12,NLRP1"
TCGA.CK.5914.01A	17	5421014	5486967	15	0.2891	NEUTRAL	NA	1	NLRP1
TCGA.AG.3909.01A	17	5433759	5993610	14	0.157	NEUTRAL	NA	2	"NLRP1,WSCD1"
TCGA.AG.4009.01A	17	5433759	6381245	42	-0.006	NEUTRAL	NA	5	"AIPL1,FAM64A,NLRP1,PITPNM3,WSCD1"
TCGA.AA.A00D.01A	17	5437166	5486967	9	-0.4681	NEUTRAL	NA	1	NLRP1
TCGA.AA.3968	17	5606282	5777382	93	-0.4665	NEUTRAL	NA	0	None
TCGA.AA.3966	17	5777022	81048658	18727	0.0893	NEUTRAL	NA	1028	Too-Many
TCGA.AA.A00N.01A	17	5983952	6331631	12	0.1335	NEUTRAL	NA	2	"AIPL1,WSCD1"
TCGA.AA.A01Q.01A	17	5983952	6353276	18	-0.4047	NEUTRAL	NA	3	"AIPL1,FAM64A,WSCD1"
TCGA.AA.A00D.01A	17	5998392	6499450	34	-0.0911	NEUTRAL	NA	5	"AIPL1,FAM64A,KIAA0753,PITPNM3,WSCD1"
TCGA.AY.A8YK	17	6134125	25395690	4482	-0.0742	NEUTRAL	NA	210	Too-Many
TCGA.AA.A01F.01A	17	6350751	6360867	4	-0.203	NEUTRAL	NA	2	"FAM64A,PITPNM3"
TCGA.AA.A01Q.01A	17	6358607	6544351	21	0.0651	NEUTRAL	NA	3	"KIAA0753,PITPNM3,TXNDC17"
TCGA.AA.A00N.01A	17	6367000	6371493	4	-0.0535	NEUTRAL	NA	1	PITPNM3
TCGA.AG.3909.01A	17	6367925	6441268	14	0.2348	NEUTRAL	NA	1	PITPNM3
TCGA.AA.A01F.01A	17	6373553	6428636	11	-0.3176	NEUTRAL	NA	1	PITPNM3
TCGA.AG.A015.01A	17	6380318	7096234	109	-0.1558	NEUTRAL	NA	19	"ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,CLEC10A,DLG4,FBXO39,KIAA0753,MED31,PITPNM3,RNASEK,SLC13A5,SLC16A11,SLC16A13,TEKT1,TXNDC17,XAF1"
TCGA.AG.A016.01A	17	6380318	7111343	117	-0.1152	NEUTRAL	NA	19	"ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,CLEC10A,DLG4,FBXO39,KIAA0753,MED31,PITPNM3,RNASEK,SLC13A5,SLC16A11,SLC16A13,TEKT1,TXNDC17,XAF1"
TCGA.CK.5914.01A	17	6381245	6528034	23	-0.0602	NEUTRAL	NA	2	"KIAA0753,PITPNM3"
TCGA.AF.3914.01A	17	6381830	6704039	57	-0.0483	NEUTRAL	NA	9	"C17orf100,FBXO39,KIAA0753,MED31,PITPNM3,SLC13A5,TEKT1,TXNDC17,XAF1"
TCGA.AG.4009.01A	17	6381830	6900128	63	-0.4373	NEUTRAL	NA	10	"ALOX12,C17orf100,FBXO39,KIAA0753,MED31,PITPNM3,SLC13A5,TEKT1,TXNDC17,XAF1"
TCGA.AA.A00N.01A	17	6387516	6515189	15	0.1348	NEUTRAL	NA	2	"KIAA0753,PITPNM3"
TCGA.AG.A01W.01A	17	6440156	6663195	50	-0.1042	NEUTRAL	NA	7	"C17orf100,KIAA0753,MED31,PITPNM3,SLC13A5,TXNDC17,XAF1"
TCGA.AA.A01F.01A	17	6441268	6553254	8	7.00E-04	NEUTRAL	NA	4	"KIAA0753,MED31,PITPNM3,TXNDC17"
TCGA.AG.3909.01A	17	6483020	6524061	13	-0.4845	NEUTRAL	NA	1	KIAA0753
TCGA.AA.A00D.01A	17	6502498	6690578	32	0.3057	NEUTRAL	NA	7	"C17orf100,FBXO39,KIAA0753,MED31,SLC13A5,TXNDC17,XAF1"
TCGA.AA.3968	17	6512469	6536660	12	-0.2528	NEUTRAL	NA	1	KIAA0753
TCGA.AG.3611.01A	17	6531388	6545510	4	-0.1689	NEUTRAL	NA	2	"KIAA0753,TXNDC17"
TCGA.AG.A00C.01A	17	6531388	6553254	7	0.095	NEUTRAL	NA	3	"KIAA0753,MED31,TXNDC17"
TCGA.AA.3968	17	6538673	6739628	94	0.3699	NEUTRAL	NA	8	"C17orf100,FBXO39,KIAA0753,MED31,SLC13A5,TEKT1,TXNDC17,XAF1"
TCGA.A6.3808.01A	17	6544351	8658779	698	-0.0896	NEUTRAL	NA	91	"ACADVL,ACAP1,ALOX12,ALOX12B,ALOX15B,ALOXE3,ARHGEF15,ASGR1,ASGR2,ATP1B2,AURKB,BCL6B,C17orf100,C17orf49,C17orf59,C17orf74,CCDC42,CD68,CHD3,CHRNB1,CLDN7,CLEC10A,CNTROB,CTC1,CTDNEP1,CYB5D1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FBXO39,FGF11,FXR2,GABARAP,GPS2,GUCY2D,HES7,KCNAB3,KCTD11,KDM6B,KRBA2,MED31,MPDU1,MYH10,NAA38,NDEL1,NEURL4,NLGN2,ODF4,PER1,PFAS,PHF23,PLSCR3,POLR2A,RANGRF,RNASEK,RNF222,RPL26,SAT2,SENP3,SHBG,SLC13A5,SLC16A11,SLC16A13,SLC25A35,SLC2A4,SLC35G6,SOX15,SPDYE4,SPEM1,TEKT1,TMEM102,TMEM107,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,TXNDC17,VAMP2,WRAP53,XAF1,YBX2,ZBTB4"
TCGA.AA.A01F.01A	17	6553613	7106515	70	-0.3368	NEUTRAL	NA	16	"ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,CLEC10A,DLG4,FBXO39,MED31,RNASEK,SLC13A5,SLC16A11,SLC16A13,TEKT1,XAF1"
TCGA.AG.A032.01A	17	6553613	7660360	309	-0.3355	NEUTRAL	NA	59	"ACADVL,ACAP1,ALOX12,ASGR1,ASGR2,ATP1B2,BCL6B,C17orf100,C17orf49,C17orf74,CD68,CHRNB1,CLDN7,CLEC10A,CTDNEP1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FBXO39,FGF11,FXR2,GABARAP,GPS2,KCTD11,MED31,MPDU1,NEURL4,NLGN2,PHF23,PLSCR3,POLR2A,RNASEK,SAT2,SENP3,SHBG,SLC13A5,SLC16A11,SLC16A13,SLC2A4,SLC35G6,SOX15,SPEM1,TEKT1,TMEM102,TMEM256,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,WRAP53,XAF1,YBX2,ZBTB4"
TCGA.AA.A00N.01A	17	6590801	6663678	15	0.1831	NEUTRAL	NA	2	"SLC13A5,XAF1"
TCGA.CK.5914.01A	17	6590801	6899397	29	-0.4654	NEUTRAL	NA	5	"ALOX12,FBXO39,SLC13A5,TEKT1,XAF1"
TCGA.AA.3977	17	6594699	6645257	19	-0.1808	NEUTRAL	NA	1	SLC13A5
TCGA.AA.A01Q.01A	17	6616524	6900128	20	0.2241	NEUTRAL	NA	5	"ALOX12,FBXO39,SLC13A5,TEKT1,XAF1"
TCGA.F5.6861	17	6623171	81048658	18332	-0.0009	NEUTRAL	NA	1019	Too-Many
TCGA.AA.3977	17	6660723	8871415	509	0.1999	NEUTRAL	NA	90	"ACADVL,ACAP1,ALOX12,ALOX12B,ALOX15B,ALOXE3,ARHGEF15,ASGR1,ASGR2,ATP1B2,AURKB,BCL6B,C17orf49,C17orf59,C17orf74,CCDC42,CD68,CHD3,CHRNB1,CLDN7,CLEC10A,CNTROB,CTC1,CTDNEP1,CYB5D1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FBXO39,FGF11,FXR2,GABARAP,GPS2,GUCY2D,HES7,KCNAB3,KCTD11,KDM6B,KRBA2,MFSD6L,MPDU1,MYH10,NAA38,NDEL1,NEURL4,NLGN2,ODF4,PER1,PFAS,PHF23,PIK3R5,PIK3R6,PLSCR3,POLR2A,RANGRF,RNASEK,RNF222,RPL26,SAT2,SENP3,SHBG,SLC16A11,SLC16A13,SLC25A35,SLC2A4,SLC35G6,SOX15,SPDYE4,SPEM1,TEKT1,TMEM102,TMEM107,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,VAMP2,WRAP53,XAF1,YBX2,ZBTB4"
TCGA.AG.A01W.01A	17	6674233	7036952	49	-0.5121	NEUTRAL	NA	11	"ALOX12,ASGR2,BCL6B,C17orf49,CLEC10A,FBXO39,RNASEK,SLC16A11,SLC16A13,TEKT1,XAF1"
TCGA.AA.A00D.01A	17	6733457	7761452	291	0.0752	NEUTRAL	NA	58	"ACADVL,ACAP1,ALOX12,ASGR1,ASGR2,ATP1B2,BCL6B,C17orf49,C17orf74,CD68,CHRNB1,CLDN7,CLEC10A,CTDNEP1,CYB5D1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FGF11,FXR2,GABARAP,GPS2,KCTD11,KDM6B,MPDU1,NAA38,NEURL4,NLGN2,PHF23,PLSCR3,POLR2A,RNASEK,SAT2,SENP3,SHBG,SLC16A11,SLC16A13,SLC2A4,SLC35G6,SOX15,SPEM1,TEKT1,TMEM102,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,WRAP53,YBX2,ZBTB4"
TCGA.AA.3968	17	6775932	7042842	56	-0.4327	NEUTRAL	NA	8	"ALOX12,ASGR2,BCL6B,C17orf49,CLEC10A,RNASEK,SLC16A11,SLC16A13"
TCGA.CL.4957	17	6802288	25313689	4192	-0.4399	NEUTRAL	NA	199	Too-Many
TCGA.AG.A00C.01A	17	6900128	6929724	21	-0.1635	NEUTRAL	NA	4	"ALOX12,BCL6B,C17orf49,RNASEK"
TCGA.AA.A010.01A	17	6901768	6943040	31	-0.1634	NEUTRAL	NA	5	"ALOX12,BCL6B,C17orf49,RNASEK,SLC16A13"
TCGA.AA.A01Q.01A	17	6901768	6943040	20	-0.3776	NEUTRAL	NA	5	"ALOX12,BCL6B,C17orf49,RNASEK,SLC16A13"
TCGA.AG.3611.01A	17	6920877	6940008	4	-0.0316	NEUTRAL	NA	2	"BCL6B,SLC16A13"
TCGA.AG.4009.01A	17	6926953	7137398	57	-0.4448	NEUTRAL	NA	9	"ACADVL,ASGR1,ASGR2,BCL6B,CLEC10A,DLG4,DVL2,SLC16A11,SLC16A13"
TCGA.AF.3914.01A	17	6930272	7147816	61	-0.173	NEUTRAL	NA	12	"ACADVL,ASGR1,ASGR2,BCL6B,CLEC10A,CTDNEP1,DLG4,DVL2,GABARAP,PHF23,SLC16A11,SLC16A13"
TCGA.AG.3611.01A	17	6941460	8348982	467	-0.4469	NEUTRAL	NA	77	"ACADVL,ACAP1,ALOX12B,ALOX15B,ALOXE3,ARHGEF15,ASGR1,ASGR2,ATP1B2,AURKB,C17orf59,C17orf74,CD68,CHD3,CHRNB1,CLDN7,CLEC10A,CNTROB,CTC1,CTDNEP1,CYB5D1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FGF11,FXR2,GABARAP,GPS2,GUCY2D,HES7,KCNAB3,KCTD11,KDM6B,KRBA2,MPDU1,NAA38,NDEL1,NEURL4,NLGN2,ODF4,PER1,PFAS,PHF23,PLSCR3,POLR2A,RANGRF,RNF222,RPL26,SAT2,SENP3,SHBG,SLC16A11,SLC16A13,SLC25A35,SLC2A4,SLC35G6,SOX15,SPEM1,TMEM102,TMEM107,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,VAMP2,WRAP53,YBX2,ZBTB4"
TCGA.AA.A01Q.01A	17	6944950	7100085	23	0.2938	NEUTRAL	NA	5	"ASGR1,ASGR2,CLEC10A,DLG4,SLC16A11"
TCGA.AA.A00N.01A	17	6945677	7100085	26	-0.0767	NEUTRAL	NA	5	"ASGR1,ASGR2,CLEC10A,DLG4,SLC16A11"
TCGA.CK.5914.01A	17	6946579	7080128	15	-0.3525	NEUTRAL	NA	4	"ASGR1,ASGR2,CLEC10A,SLC16A11"
TCGA.AG.A01W.01A	17	7037480	7081376	26	-0.0175	NEUTRAL	NA	1	ASGR1
TCGA.AA.3968	17	7049787	9262181	554	0.376	NEUTRAL	NA	81	"ACADVL,ACAP1,ALOX12B,ALOX15B,ALOXE3,ARHGEF15,ASGR1,ATP1B2,AURKB,C17orf59,C17orf74,CCDC42,CD68,CHD3,CHRNB1,CLDN7,CNTROB,CTC1,CTDNEP1,CYB5D1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FGF11,FXR2,GABARAP,GPS2,GUCY2D,HES7,KCNAB3,KCTD11,KDM6B,KRBA2,MFSD6L,MPDU1,MYH10,NAA38,NDEL1,NEURL4,NLGN2,NTN1,ODF4,PER1,PFAS,PHF23,PIK3R5,PIK3R6,PLSCR3,POLR2A,RANGRF,RNF222,RPL26,SAT2,SENP3,SHBG,SLC25A35,SLC2A4,SLC35G6,SOX15,SPDYE4,SPEM1,STX8,TMEM102,TMEM107,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,VAMP2,WRAP53,YBX2,ZBTB4"
TCGA.AA.3846	17	7065373	8174892	196	-0.3046	NEUTRAL	NA	65	"ACADVL,ACAP1,ALOX12B,ALOX15B,ALOXE3,ASGR1,ATP1B2,AURKB,C17orf59,C17orf74,CD68,CHD3,CHRNB1,CLDN7,CNTROB,CTC1,CTDNEP1,CYB5D1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FGF11,FXR2,GABARAP,GPS2,GUCY2D,HES7,KCNAB3,KCTD11,KDM6B,MPDU1,NAA38,NEURL4,NLGN2,PER1,PFAS,PHF23,PLSCR3,POLR2A,SAT2,SENP3,SHBG,SLC2A4,SLC35G6,SOX15,SPEM1,TMEM102,TMEM107,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,VAMP2,WRAP53,YBX2,ZBTB4"
TCGA.AG.A00C.01A	17	7081747	7368983	139	-0.1824	NEUTRAL	NA	27	"ACADVL,ACAP1,ASGR1,C17orf74,CHRNB1,CLDN7,CTDNEP1,DLG4,DVL2,EIF5A,ELP5,FGF11,GABARAP,GPS2,KCTD11,NEURL4,NLGN2,PHF23,PLSCR3,SLC2A4,SPEM1,TMEM102,TMEM256,TMEM95,TNK1,YBX2,ZBTB4"
TCGA.AA.A010.01A	17	7096234	7123127	15	0.0344	NEUTRAL	NA	2	"ACADVL,DLG4"
TCGA.AG.A01W.01A	17	7096496	7171437	39	-0.0259	NEUTRAL	NA	8	"ACADVL,CLDN7,CTDNEP1,DLG4,DVL2,ELP5,GABARAP,PHF23"
TCGA.AG.A015.01A	17	7096774	7129177	19	0.3778	NEUTRAL	NA	3	"ACADVL,DLG4,DVL2"
TCGA.AA.A01Q.01A	17	7106170	7185184	37	-0.3637	NEUTRAL	NA	9	"ACADVL,CLDN7,CTDNEP1,DLG4,DVL2,ELP5,GABARAP,PHF23,SLC2A4"
TCGA.AA.A01F.01A	17	7123735	7129743	10	0.2011	NEUTRAL	NA	2	"ACADVL,DVL2"
TCGA.AA.3967.01A	17	7129177	7368983	125	-0.3264	NEUTRAL	NA	24	"ACAP1,C17orf74,CHRNB1,CLDN7,CTDNEP1,DVL2,EIF5A,ELP5,FGF11,GABARAP,GPS2,KCTD11,NEURL4,NLGN2,PHF23,PLSCR3,SLC2A4,SPEM1,TMEM102,TMEM256,TMEM95,TNK1,YBX2,ZBTB4"
TCGA.AG.A015.01A	17	7129743	7163676	22	-0.3064	NEUTRAL	NA	6	"CLDN7,CTDNEP1,DVL2,ELP5,GABARAP,PHF23"
TCGA.AA.A01F.01A	17	7130402	7349314	75	-0.2088	NEUTRAL	NA	23	"ACAP1,C17orf74,CHRNB1,CLDN7,CTDNEP1,DVL2,EIF5A,ELP5,FGF11,GABARAP,GPS2,KCTD11,NEURL4,NLGN2,PHF23,PLSCR3,SLC2A4,SPEM1,TMEM102,TMEM256,TMEM95,TNK1,YBX2"
TCGA.AG.A016.01A	17	7132240	7163676	19	-0.2156	NEUTRAL	NA	6	"CLDN7,CTDNEP1,DVL2,ELP5,GABARAP,PHF23"
TCGA.AA.3514	17	7140605	10234590	1013	0.0151	NEUTRAL	NA	84	"ACAP1,ALOX12B,ALOX15B,ALOXE3,ARHGEF15,ATP1B2,AURKB,C17orf59,C17orf74,CCDC42,CD68,CFAP52,CHD3,CHRNB1,CLDN7,CNTROB,CTC1,CTDNEP1,CYB5D1,DHRS7C,DNAH2,EFNB3,EIF4A1,EIF5A,ELP5,FGF11,FXR2,GABARAP,GAS7,GLP2R,GPS2,GUCY2D,HES7,KCNAB3,KCTD11,KDM6B,KRBA2,MFSD6L,MPDU1,MYH10,MYH13,NAA38,NDEL1,NEURL4,NLGN2,NTN1,ODF4,PER1,PFAS,PHF23,PIK3R5,PIK3R6,PLSCR3,POLR2A,RANGRF,RCVRN,RNF222,RPL26,SAT2,SENP3,SHBG,SLC25A35,SLC2A4,SLC35G6,SOX15,SPDYE4,SPEM1,STX8,TMEM102,TMEM107,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,USP43,VAMP2,WRAP53,YBX2,ZBTB4"
TCGA.AA.3930.01A	17	7142484	7329263	97	-0.4063	NEUTRAL	NA	19	"ACAP1,C17orf74,CLDN7,CTDNEP1,EIF5A,ELP5,GABARAP,GPS2,KCTD11,NEURL4,NLGN2,PHF23,PLSCR3,SLC2A4,SPEM1,TMEM256,TMEM95,TNK1,YBX2"
TCGA.AG.3906.01A	17	7144108	7192035	22	-0.0901	NEUTRAL	NA	6	"CLDN7,CTDNEP1,ELP5,GABARAP,SLC2A4,YBX2"
TCGA.AG.A015.01A	17	7165110	7196749	12	0.3757	NEUTRAL	NA	3	"CLDN7,SLC2A4,YBX2"
TCGA.AF.6672	17	7172630	81048658	18240	-0.0221	NEUTRAL	NA	999	Too-Many
TCGA.AG.A01L.01A	17	7186512	7196749	11	0.0404	NEUTRAL	NA	2	"SLC2A4,YBX2"
TCGA.AG.A01W.01A	17	7190232	7238054	23	-0.0772	NEUTRAL	NA	5	"EIF5A,GPS2,NEURL4,SLC2A4,YBX2"
TCGA.AG.3906.01A	17	7192797	7228066	22	0.211	NEUTRAL	NA	4	"EIF5A,GPS2,NEURL4,YBX2"
TCGA.AG.A01L.01A	17	7210302	7217180	7	-0.397	NEUTRAL	NA	2	"EIF5A,GPS2"
TCGA.AG.A015.01A	17	7210302	7221807	12	-0.2148	NEUTRAL	NA	3	"EIF5A,GPS2,NEURL4"
TCGA.AG.A016.01A	17	7210302	7328970	58	-0.0157	NEUTRAL	NA	12	"ACAP1,C17orf74,EIF5A,GPS2,KCTD11,NEURL4,NLGN2,PLSCR3,SPEM1,TMEM256,TMEM95,TNK1"
TCGA.AG.A01L.01A	17	7217590	7229517	14	0.1757	NEUTRAL	NA	2	"GPS2,NEURL4"
TCGA.AA.A01Q.01A	17	7218237	7536480	133	-0.4037	NEUTRAL	NA	28	"ACAP1,C17orf74,CD68,CHRNB1,EIF4A1,FGF11,FXR2,GPS2,KCTD11,MPDU1,NEURL4,NLGN2,PLSCR3,POLR2A,SAT2,SENP3,SHBG,SLC35G6,SOX15,SPEM1,TMEM102,TMEM256,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,ZBTB4"
TCGA.AG.A015.01A	17	7222317	7230728	11	0.2472	NEUTRAL	NA	1	NEURL4
TCGA.AG.3906.01A	17	7228488	7297330	33	-0.2063	NEUTRAL	NA	6	"ACAP1,KCTD11,NEURL4,PLSCR3,TMEM95,TNK1"
TCGA.AG.A01L.01A	17	7230032	7348387	47	-0.3808	NEUTRAL	NA	12	"ACAP1,C17orf74,FGF11,KCTD11,NEURL4,NLGN2,PLSCR3,SPEM1,TMEM102,TMEM256,TMEM95,TNK1"
TCGA.AG.A015.01A	17	7239980	7290635	19	-0.181	NEUTRAL	NA	4	"ACAP1,KCTD11,TMEM95,TNK1"
TCGA.AG.A015.01A	17	7291714	7317635	9	0.3328	NEUTRAL	NA	4	"NLGN2,PLSCR3,TMEM256,TNK1"
TCGA.AG.A015.01A	17	7317984	7350101	17	-0.2463	NEUTRAL	NA	6	"C17orf74,CHRNB1,FGF11,NLGN2,SPEM1,TMEM102"
TCGA.AG.A016.01A	17	7329263	7349314	8	-0.3333	NEUTRAL	NA	4	"C17orf74,CHRNB1,FGF11,TMEM102"
TCGA.AG.3906.01A	17	7329263	7385277	18	-0.0696	NEUTRAL	NA	6	"C17orf74,CHRNB1,FGF11,SLC35G6,TMEM102,ZBTB4"
TCGA.AG.3891.01A	17	7329263	7412804	35	-0.1648	NEUTRAL	NA	7	"C17orf74,CHRNB1,FGF11,POLR2A,SLC35G6,TMEM102,ZBTB4"
TCGA.AF.3914.01A	17	7329263	7462349	45	-0.3936	NEUTRAL	NA	10	"C17orf74,CHRNB1,FGF11,POLR2A,SLC35G6,TMEM102,TNFSF12,TNFSF12-TNFSF13,TNFSF13,ZBTB4"
TCGA.AA.3930.01A	17	7339203	7388034	21	0.0201	NEUTRAL	NA	6	"CHRNB1,FGF11,POLR2A,SLC35G6,TMEM102,ZBTB4"
TCGA.AG.A01W.01A	17	7343031	7356766	14	0.0431	NEUTRAL	NA	2	"CHRNB1,FGF11"
TCGA.AG.A016.01A	17	7358565	7400648	11	-0.413	NEUTRAL	NA	4	"CHRNB1,POLR2A,SLC35G6,ZBTB4"
TCGA.AG.A015.01A	17	7365212	7401347	8	-0.2603	NEUTRAL	NA	3	"POLR2A,SLC35G6,ZBTB4"
TCGA.AA.A01F.01A	17	7365212	21319226	1251	-0.2752	NEUTRAL	NA	163	Too-Many
TCGA.AG.A01L.01A	17	7368983	7468265	35	-0.2902	NEUTRAL	NA	7	"POLR2A,SENP3,SLC35G6,TNFSF12,TNFSF12-TNFSF13,TNFSF13,ZBTB4"
TCGA.AA.A00N.01A	17	7388034	7452450	22	-0.1541	NEUTRAL	NA	3	"POLR2A,TNFSF12,TNFSF12-TNFSF13"
TCGA.AG.A016.01A	17	7401347	7536480	71	-0.0258	NEUTRAL	NA	12	"CD68,EIF4A1,FXR2,MPDU1,POLR2A,SAT2,SENP3,SHBG,SOX15,TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AG.A015.01A	17	7402329	7536480	69	0.015	NEUTRAL	NA	12	"CD68,EIF4A1,FXR2,MPDU1,POLR2A,SAT2,SENP3,SHBG,SOX15,TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AA.A010.01A	17	7405790	7462349	18	-0.0846	NEUTRAL	NA	4	"POLR2A,TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AA.A00A.01A	17	7415080	7463617	13	0.3023	NEUTRAL	NA	4	"POLR2A,TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AG.A01W.01A	17	7415365	7435841	18	-0.079	NEUTRAL	NA	1	POLR2A
TCGA.AA.3930.01A	17	7452450	7534007	55	-0.3292	NEUTRAL	NA	11	"CD68,EIF4A1,FXR2,MPDU1,SAT2,SENP3,SHBG,SOX15,TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AG.A00C.01A	17	7453374	7640367	83	-0.1344	NEUTRAL	NA	16	"ATP1B2,CD68,DNAH2,EFNB3,EIF4A1,FXR2,MPDU1,SAT2,SENP3,SHBG,SOX15,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TP53,WRAP53"
TCGA.AG.3891.01A	17	7453374	7736649	146	-0.0653	NEUTRAL	NA	16	"ATP1B2,CD68,DNAH2,EFNB3,EIF4A1,FXR2,MPDU1,SAT2,SENP3,SHBG,SOX15,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TP53,WRAP53"
TCGA.AA.3967.01A	17	7453374	8195777	341	-0.38	NEUTRAL	NA	38	"ALOX12B,ALOX15B,ALOXE3,ATP1B2,AURKB,C17orf59,CD68,CHD3,CNTROB,CTC1,CYB5D1,DNAH2,EFNB3,EIF4A1,FXR2,GUCY2D,HES7,KCNAB3,KDM6B,MPDU1,NAA38,PER1,PFAS,RANGRF,SAT2,SENP3,SHBG,SLC25A35,SOX15,TMEM107,TMEM88,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TP53,TRAPPC1,VAMP2,WRAP53"
TCGA.AF.3914.01A	17	7487134	7496699	9	0.3627	NEUTRAL	NA	3	"FXR2,MPDU1,SOX15"
TCGA.AF.3914.01A	17	7497179	7611698	39	-0.3897	NEUTRAL	NA	7	"ATP1B2,EFNB3,FXR2,SAT2,SHBG,TP53,WRAP53"
TCGA.AG.3906.01A	17	7497937	7626886	38	-0.2618	NEUTRAL	NA	8	"ATP1B2,DNAH2,EFNB3,FXR2,SAT2,SHBG,TP53,WRAP53"
TCGA.AA.3930.01A	17	7534471	7623013	28	-0.0395	NEUTRAL	NA	6	"ATP1B2,DNAH2,EFNB3,SHBG,TP53,WRAP53"
TCGA.AA.A01Q.01A	17	7554810	7682539	52	0.0315	NEUTRAL	NA	5	"ATP1B2,DNAH2,EFNB3,TP53,WRAP53"
TCGA.AG.A016.01A	17	7556665	7604006	14	-0.4908	NEUTRAL	NA	3	"ATP1B2,TP53,WRAP53"
TCGA.AG.A015.01A	17	7556665	7683939	53	-0.3193	NEUTRAL	NA	5	"ATP1B2,DNAH2,EFNB3,TP53,WRAP53"
TCGA.AG.3909.01A	17	7573889	7592857	8	-0.3554	NEUTRAL	NA	2	"TP53,WRAP53"
TCGA.A6.6652	17	7580051	9479876	554	-0.0694	NEUTRAL	NA	40	"ALOX12B,ALOX15B,ALOXE3,ARHGEF15,AURKB,C17orf59,CCDC42,CHD3,CNTROB,CTC1,CYB5D1,DNAH2,EFNB3,GUCY2D,HES7,KCNAB3,KDM6B,KRBA2,MFSD6L,MYH10,NAA38,NDEL1,NTN1,ODF4,PER1,PFAS,PIK3R5,PIK3R6,RANGRF,RNF222,RPL26,SLC25A35,SPDYE4,STX8,TMEM107,TMEM88,TP53,TRAPPC1,VAMP2,WRAP53"
TCGA.AG.A01W.01A	17	7602509	7610310	8	-0.264	NEUTRAL	NA	2	"EFNB3,WRAP53"
TCGA.AG.A016.01A	17	7604726	7636357	12	-0.0473	NEUTRAL	NA	3	"DNAH2,EFNB3,WRAP53"
TCGA.AG.4009.01A	17	7608878	7733934	69	-0.0964	NEUTRAL	NA	2	"DNAH2,EFNB3"
TCGA.AF.3914.01A	17	7612483	7733934	66	0.0748	NEUTRAL	NA	2	"DNAH2,EFNB3"
TCGA.AA.3930.01A	17	7626886	7668672	17	-0.3789	NEUTRAL	NA	1	DNAH2
TCGA.AG.A01W.01A	17	7630196	7645874	15	-0.2555	NEUTRAL	NA	1	DNAH2
TCGA.AG.3909.01A	17	7630423	7727467	60	-0.2655	NEUTRAL	NA	1	DNAH2
TCGA.AG.A016.01A	17	7637453	7695984	35	-0.2964	NEUTRAL	NA	1	DNAH2
TCGA.CK.5914.01A	17	7643691	7721919	50	-0.4292	NEUTRAL	NA	1	DNAH2
TCGA.AA.A00N.01A	17	7643691	7722508	51	0.2942	NEUTRAL	NA	1	DNAH2
TCGA.AG.A032.01A	17	7663070	14139123	717	-0.4453	NEUTRAL	NA	62	"ADPRM,ALOX12B,ALOX15B,ALOXE3,ARHGAP44,ARHGEF15,AURKB,C17orf59,CCDC42,CFAP52,CHD3,CNTROB,COX10,CTC1,CYB5D1,DHRS7C,DNAH2,DNAH9,ELAC2,GAS7,GLP2R,GUCY2D,HES7,HS3ST3A1,KCNAB3,KDM6B,KRBA2,MAP2K4,MFSD6L,MYH1,MYH10,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,NAA38,NDEL1,NTN1,ODF4,PER1,PFAS,PIK3R5,PIK3R6,PIRT,RANGRF,RCVRN,RNF222,RPL26,SCO1,SHISA6,SLC25A35,SPDYE4,STX8,TMEM107,TMEM220,TMEM88,TRAPPC1,USP43,VAMP2,ZNF18"
TCGA.AA.3930.01A	17	7669584	7684313	14	0.0389	NEUTRAL	NA	1	DNAH2
TCGA.AG.A01W.01A	17	7677406	7700727	12	-0.1392	NEUTRAL	NA	1	DNAH2
TCGA.AA.A01Q.01A	17	7683433	7708563	22	-0.387	NEUTRAL	NA	1	DNAH2
TCGA.AG.A015.01A	17	7684313	7708563	20	0.0108	NEUTRAL	NA	1	DNAH2
TCGA.AG.A01L.01A	17	7689401	7749172	39	-0.5064	NEUTRAL	NA	2	"DNAH2,KDM6B"
TCGA.AA.3930.01A	17	7689401	8216760	242	-0.3916	NEUTRAL	NA	24	"ALOX12B,ALOX15B,ALOXE3,ARHGEF15,AURKB,C17orf59,CHD3,CNTROB,CTC1,CYB5D1,DNAH2,GUCY2D,HES7,KCNAB3,KDM6B,NAA38,PER1,PFAS,RANGRF,SLC25A35,TMEM107,TMEM88,TRAPPC1,VAMP2"
TCGA.AG.A016.01A	17	7697544	7708563	12	-0.0146	NEUTRAL	NA	1	DNAH2
TCGA.AG.A015.01A	17	7710496	7749172	20	-0.3399	NEUTRAL	NA	2	"DNAH2,KDM6B"
TCGA.AG.A016.01A	17	7710496	7749172	20	-0.4688	NEUTRAL	NA	2	"DNAH2,KDM6B"
TCGA.AA.A01Q.01A	17	7710496	7788218	33	0.0509	NEUTRAL	NA	6	"CHD3,CYB5D1,DNAH2,KDM6B,NAA38,TMEM88"
TCGA.AA.A010.01A	17	7719851	7727814	11	-0.4611	NEUTRAL	NA	1	DNAH2
TCGA.AA.A00A.01A	17	7727103	7761452	20	0.0695	NEUTRAL	NA	5	"CYB5D1,DNAH2,KDM6B,NAA38,TMEM88"
TCGA.AG.A00C.01A	17	7733606	7734452	3	-0.0093	NEUTRAL	NA	1	DNAH2
TCGA.AG.A00C.01A	17	7735847	7762689	16	-0.385	NEUTRAL	NA	5	"CYB5D1,DNAH2,KDM6B,NAA38,TMEM88"
TCGA.AG.A01W.01A	17	7747279	7755468	12	-0.141	NEUTRAL	NA	1	KDM6B
TCGA.AG.A015.01A	17	7750716	7754302	4	0.254	NEUTRAL	NA	1	KDM6B
TCGA.AG.A01L.01A	17	7750716	7761452	9	-0.1285	NEUTRAL	NA	4	"CYB5D1,KDM6B,NAA38,TMEM88"
TCGA.AG.3906.01A	17	7755765	7762689	7	0.0196	NEUTRAL	NA	4	"CYB5D1,KDM6B,NAA38,TMEM88"
TCGA.AG.A015.01A	17	7755765	7794227	11	-0.3662	NEUTRAL	NA	5	"CHD3,CYB5D1,KDM6B,NAA38,TMEM88"
TCGA.AG.A016.01A	17	7756269	7798610	16	-0.4376	NEUTRAL	NA	5	"CHD3,CYB5D1,KDM6B,NAA38,TMEM88"
TCGA.AG.3891.01A	17	7762689	7833894	44	0.195	NEUTRAL	NA	4	"CHD3,CYB5D1,KCNAB3,TRAPPC1"
TCGA.AG.A00C.01A	17	7792282	7812419	32	-0.0131	NEUTRAL	NA	1	CHD3
TCGA.AG.A016.01A	17	7800374	7808350	14	0.3129	NEUTRAL	NA	1	CHD3
TCGA.AG.A015.01A	17	7800374	7814730	25	-0.0422	NEUTRAL	NA	1	CHD3
TCGA.AA.A024.01A	17	7802279	28616341	1828	0.0598	NEUTRAL	NA	196	Too-Many
TCGA.AG.A01L.01A	17	7806205	7826732	18	-0.3069	NEUTRAL	NA	2	"CHD3,KCNAB3"
TCGA.AG.A016.01A	17	7808910	7999896	71	-0.1357	NEUTRAL	NA	8	"ALOX12B,ALOX15B,ALOXE3,CHD3,CNTROB,GUCY2D,KCNAB3,TRAPPC1"
TCGA.AG.A00C.01A	17	7813695	8272471	159	-0.3578	NEUTRAL	NA	21	"ALOX12B,ALOX15B,ALOXE3,ARHGEF15,AURKB,C17orf59,CHD3,CNTROB,CTC1,GUCY2D,HES7,KCNAB3,KRBA2,ODF4,PER1,PFAS,RANGRF,SLC25A35,TMEM107,TRAPPC1,VAMP2"
TCGA.AG.3906.01A	17	7829255	7919014	37	-0.3337	NEUTRAL	NA	4	"CNTROB,GUCY2D,KCNAB3,TRAPPC1"
TCGA.AA.A01Q.01A	17	7832463	7840431	11	-0.4153	NEUTRAL	NA	3	"CNTROB,KCNAB3,TRAPPC1"
TCGA.AG.3891.01A	17	7834312	8046593	74	-0.2831	NEUTRAL	NA	8	"ALOX12B,ALOX15B,ALOXE3,CNTROB,GUCY2D,HES7,PER1,TRAPPC1"
TCGA.AA.A00D.01A	17	7834312	8248654	134	0.0531	NEUTRAL	NA	18	"ALOX12B,ALOX15B,ALOXE3,ARHGEF15,AURKB,C17orf59,CNTROB,CTC1,GUCY2D,HES7,ODF4,PER1,PFAS,RANGRF,SLC25A35,TMEM107,TRAPPC1,VAMP2"
TCGA.AF.3914.01A	17	7838258	8007406	52	-0.1656	NEUTRAL	NA	5	"ALOX12B,ALOX15B,ALOXE3,CNTROB,GUCY2D"
TCGA.AG.A015.01A	17	7839632	81042842	7243	-0.1653	NEUTRAL	NA	956	Too-Many
TCGA.AG.3909.01A	17	7842780	7852651	11	-0.0383	NEUTRAL	NA	1	CNTROB
TCGA.AA.A01Q.01A	17	7842780	7906354	12	0.224	NEUTRAL	NA	2	"CNTROB,GUCY2D"
TCGA.AA.A00N.01A	17	7842780	7909689	14	0.0483	NEUTRAL	NA	2	"CNTROB,GUCY2D"
TCGA.AA.A010.01A	17	7842780	7917912	23	-0.2778	NEUTRAL	NA	2	"CNTROB,GUCY2D"
TCGA.AG.4009.01A	17	7846658	7852651	9	-0.4468	NEUTRAL	NA	1	CNTROB
TCGA.CK.5914.01A	17	7846658	7852651	9	-0.1015	NEUTRAL	NA	1	CNTROB
TCGA.AA.A00Z.01A	17	7847742	27993843	69	-0.2236	NEUTRAL	NA	189	Too-Many
TCGA.AG.A01W.01A	17	7847879	8007161	68	-0.2705	NEUTRAL	NA	5	"ALOX12B,ALOX15B,ALOXE3,CNTROB,GUCY2D"
TCGA.D5.6923	17	7888970	81048658	18090	-0.0379	NEUTRAL	NA	955	Too-Many
TCGA.AA.A01Q.01A	17	7907142	7976938	28	-0.2448	NEUTRAL	NA	3	"ALOX12B,ALOX15B,GUCY2D"
TCGA.AA.A00N.01A	17	7916380	7951682	17	-0.0901	NEUTRAL	NA	2	"ALOX15B,GUCY2D"
TCGA.AA.A010.01A	17	7918678	7989315	24	0.3782	NEUTRAL	NA	3	"ALOX12B,ALOX15B,GUCY2D"
TCGA.AG.4009.01A	17	7919014	8006590	21	-0.1582	NEUTRAL	NA	4	"ALOX12B,ALOX15B,ALOXE3,GUCY2D"
TCGA.AG.3906.01A	17	7983090	8050166	27	-0.3204	NEUTRAL	NA	4	"ALOX12B,ALOXE3,HES7,PER1"
TCGA.AA.A010.01A	17	7990597	8027313	17	-0.3863	NEUTRAL	NA	3	"ALOX12B,ALOXE3,HES7"
TCGA.AG.A016.01A	17	8006590	8065558	30	0.1915	NEUTRAL	NA	4	"ALOXE3,HES7,PER1,VAMP2"
TCGA.AG.A01L.01A	17	8011735	8027313	12	-0.0939	NEUTRAL	NA	2	"ALOXE3,HES7"
TCGA.AF.3914.01A	17	8025617	8052570	16	-0.3492	NEUTRAL	NA	2	"HES7,PER1"
TCGA.AG.A01L.01A	17	8044338	8192527	64	-0.5121	NEUTRAL	NA	9	"AURKB,C17orf59,CTC1,PER1,PFAS,RANGRF,SLC25A35,TMEM107,VAMP2"
TCGA.AG.3891.01A	17	8048058	8077789	14	0.1504	NEUTRAL	NA	3	"PER1,TMEM107,VAMP2"
TCGA.AG.3906.01A	17	8050527	8077789	10	0.329	NEUTRAL	NA	3	"PER1,TMEM107,VAMP2"
TCGA.AG.A01W.01A	17	8072183	8138477	42	-0.3559	NEUTRAL	NA	4	"AURKB,C17orf59,CTC1,TMEM107"
TCGA.AG.A016.01A	17	8077454	8472985	112	-0.2033	NEUTRAL	NA	14	"ARHGEF15,AURKB,C17orf59,CTC1,KRBA2,MYH10,NDEL1,ODF4,PFAS,RANGRF,RNF222,RPL26,SLC25A35,TMEM107"
TCGA.AG.3909.01A	17	8079027	8139119	21	-0.4229	NEUTRAL	NA	4	"AURKB,C17orf59,CTC1,TMEM107"
TCGA.AA.A00N.01A	17	8079027	8172251	46	0.0652	NEUTRAL	NA	5	"AURKB,C17orf59,CTC1,PFAS,TMEM107"
TCGA.AG.3891.01A	17	8079027	8194614	49	-0.2955	NEUTRAL	NA	7	"AURKB,C17orf59,CTC1,PFAS,RANGRF,SLC25A35,TMEM107"
TCGA.AA.A01Q.01A	17	8079027	8243363	57	0.0291	NEUTRAL	NA	9	"ARHGEF15,AURKB,C17orf59,CTC1,ODF4,PFAS,RANGRF,SLC25A35,TMEM107"
TCGA.AF.3914.01A	17	8079027	8248949	63	-0.1164	NEUTRAL	NA	9	"ARHGEF15,AURKB,C17orf59,CTC1,ODF4,PFAS,RANGRF,SLC25A35,TMEM107"
TCGA.AG.3906.01A	17	8079027	8285413	69	-0.4982	NEUTRAL	NA	11	"ARHGEF15,AURKB,C17orf59,CTC1,KRBA2,ODF4,PFAS,RANGRF,RPL26,SLC25A35,TMEM107"
TCGA.AA.A010.01A	17	8092348	8093073	2	0.1431	NEUTRAL	NA	1	C17orf59
TCGA.AG.4009.01A	17	8092348	8159861	28	-0.1881	NEUTRAL	NA	4	"AURKB,C17orf59,CTC1,PFAS"
TCGA.A6.A56B	17	8099182	20483881	3732	-0.0238	NEUTRAL	NA	119	Too-Many
TCGA.AG.4009.01A	17	8160125	8219044	27	0.1437	NEUTRAL	NA	4	"ARHGEF15,PFAS,RANGRF,SLC25A35"
TCGA.AA.3846	17	8178327	81048658	18071	0.3037	NEUTRAL	NA	943	Too-Many
TCGA.AG.A01W.01A	17	8184058	10206112	205	-0.4261	NEUTRAL	NA	23	"ARHGEF15,CCDC42,CFAP52,DHRS7C,GAS7,GLP2R,KRBA2,MFSD6L,MYH10,MYH13,NDEL1,NTN1,ODF4,PIK3R5,PIK3R6,RANGRF,RCVRN,RNF222,RPL26,SLC25A35,SPDYE4,STX8,USP43"
TCGA.AA.A00N.01A	17	8192054	8243363	17	-0.4839	NEUTRAL	NA	4	"ARHGEF15,ODF4,RANGRF,SLC25A35"
TCGA.AG.3891.01A	17	8195777	8348982	23	0.0054	NEUTRAL	NA	7	"ARHGEF15,KRBA2,NDEL1,ODF4,RNF222,RPL26,SLC25A35"
TCGA.AA.3967.01A	17	8197729	8280973	18	0.1283	NEUTRAL	NA	5	"ARHGEF15,KRBA2,ODF4,RPL26,SLC25A35"
TCGA.AA.3930.01A	17	8218152	8243363	8	0.2234	NEUTRAL	NA	2	"ARHGEF15,ODF4"
TCGA.AG.4009.01A	17	8221646	8243363	5	-0.1886	NEUTRAL	NA	2	"ARHGEF15,ODF4"
TCGA.AA.A01D.01A	17	8221646	10296166	199	-0.4701	NEUTRAL	NA	22	"ARHGEF15,CCDC42,CFAP52,DHRS7C,GAS7,GLP2R,KRBA2,MFSD6L,MYH10,MYH13,MYH8,NDEL1,NTN1,ODF4,PIK3R5,PIK3R6,RCVRN,RNF222,RPL26,SPDYE4,STX8,USP43"
TCGA.AA.A010.01A	17	8243363	8363320	17	0.0538	NEUTRAL	NA	5	"KRBA2,NDEL1,ODF4,RNF222,RPL26"
TCGA.AA.3930.01A	17	8248654	17707018	770	-0.4627	NEUTRAL	NA	71	"ADORA2B,ADPRM,ARHGAP44,CCDC144A,CCDC42,CDRT1,CDRT15,CDRT4,CENPV,CFAP52,COPS3,COX10,DHRS7C,DNAH9,ELAC2,FLCN,GAS7,GLP2R,HS3ST3A1,HS3ST3B1,KRBA2,LRRC75A,MAP2K4,MED9,MFSD6L,MPRIP,MYH1,MYH10,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,NCOR1,NDEL1,NT5M,NTN1,ODF4,PEMT,PIGL,PIK3R5,PIK3R6,PIRT,PLD6,PMP22,RAI1,RASD1,RCVRN,RNF222,RPL26,SCO1,SHISA6,SPDYE4,STX8,TBC1D26,TEKT3,TMEM220,TNFRSF13B,TRIM16,TRPV2,TTC19,TVP23C,TVP23C-CDRT4,UBB,USP43,ZNF18,ZNF286A,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.A00C.01A	17	8272855	8348982	7	0.2727	NEUTRAL	NA	4	"KRBA2,NDEL1,RNF222,RPL26"
TCGA.AF.3914.01A	17	8347536	8397002	20	0.1442	NEUTRAL	NA	2	"MYH10,NDEL1"
TCGA.AA.A01Q.01A	17	8347536	12819177	395	0.1705	NEUTRAL	NA	31	"ADPRM,ARHGAP44,CCDC42,CFAP52,DHRS7C,DNAH9,GAS7,GLP2R,MAP2K4,MFSD6L,MYH1,MYH10,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,NDEL1,NTN1,PIK3R5,PIK3R6,PIRT,RCVRN,SCO1,SHISA6,SPDYE4,STX8,TMEM220,USP43,ZNF18"
TCGA.AG.A00C.01A	17	8350033	8381614	10	-0.3318	NEUTRAL	NA	2	"MYH10,NDEL1"
TCGA.AG.3891.01A	17	8350033	10369842	240	-0.3553	NEUTRAL	NA	18	"CCDC42,CFAP52,DHRS7C,GAS7,GLP2R,MFSD6L,MYH10,MYH13,MYH4,MYH8,NDEL1,NTN1,PIK3R5,PIK3R6,RCVRN,SPDYE4,STX8,USP43"
TCGA.AG.4009.01A	17	8363320	9515599	104	-0.3252	NEUTRAL	NA	10	"CCDC42,CFAP52,MFSD6L,MYH10,NDEL1,NTN1,PIK3R5,PIK3R6,SPDYE4,STX8"
TCGA.AG.3611.01A	17	8366554	9923057	125	-0.4598	NEUTRAL	NA	15	"CCDC42,CFAP52,DHRS7C,GAS7,GLP2R,MFSD6L,MYH10,NDEL1,NTN1,PIK3R5,PIK3R6,RCVRN,SPDYE4,STX8,USP43"
TCGA.AA.A00A.01A	17	8370197	8416834	21	-0.0062	NEUTRAL	NA	2	"MYH10,NDEL1"
TCGA.AA.A00D.01A	17	8370197	8416834	21	-0.3522	NEUTRAL	NA	2	"MYH10,NDEL1"
TCGA.AA.A00N.01A	17	8370197	8445376	27	-0.0039	NEUTRAL	NA	2	"MYH10,NDEL1"
TCGA.AA.A01C.01A	17	8370197	15645198	506	-0.3393	NEUTRAL	NA	45	"ADPRM,ARHGAP44,CCDC42,CDRT1,CDRT15,CDRT4,CFAP52,COX10,DHRS7C,DNAH9,ELAC2,GAS7,GLP2R,HS3ST3A1,HS3ST3B1,MAP2K4,MFSD6L,MYH1,MYH10,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,NDEL1,NTN1,PIK3R5,PIK3R6,PIRT,PMP22,RCVRN,SCO1,SHISA6,SPDYE4,STX8,TBC1D26,TEKT3,TMEM220,TRIM16,TVP23C,TVP23C-CDRT4,USP43,ZNF18,ZNF286A"
TCGA.AF.3914.01A	17	8398408	8702088	39	-0.3442	NEUTRAL	NA	4	"CCDC42,MFSD6L,MYH10,SPDYE4"
TCGA.AG.A00C.01A	17	8413083	8725110	37	-0.3483	NEUTRAL	NA	5	"CCDC42,MFSD6L,MYH10,PIK3R6,SPDYE4"
TCGA.AA.3862.01A	17	8415717	9745762	119	-0.3534	NEUTRAL	NA	12	"CCDC42,CFAP52,DHRS7C,GLP2R,MFSD6L,MYH10,NTN1,PIK3R5,PIK3R6,SPDYE4,STX8,USP43"
TCGA.AA.3861.01A	17	8415717	10307657	189	-0.3	NEUTRAL	NA	16	"CCDC42,CFAP52,DHRS7C,GAS7,GLP2R,MFSD6L,MYH10,MYH13,MYH8,NTN1,PIK3R5,PIK3R6,RCVRN,SPDYE4,STX8,USP43"
TCGA.AA.A00D.01A	17	8421910	9737078	78	0.0436	NEUTRAL	NA	12	"CCDC42,CFAP52,DHRS7C,GLP2R,MFSD6L,MYH10,NTN1,PIK3R5,PIK3R6,SPDYE4,STX8,USP43"
TCGA.AA.A010.01A	17	8472985	8726654	27	-0.1062	NEUTRAL	NA	5	"CCDC42,MFSD6L,MYH10,PIK3R6,SPDYE4"
TCGA.AG.A016.01A	17	8480512	8647800	10	0.3051	NEUTRAL	NA	2	"CCDC42,MYH10"
TCGA.AA.3864	17	8514140	14413660	2382	0.0804	NEUTRAL	NA	35	"ADPRM,ARHGAP44,CCDC42,CDRT15,CFAP52,COX10,DHRS7C,DNAH9,ELAC2,GAS7,GLP2R,HS3ST3A1,HS3ST3B1,MAP2K4,MFSD6L,MYH1,MYH10,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,NTN1,PIK3R5,PIK3R6,PIRT,RCVRN,SCO1,SHISA6,SPDYE4,STX8,TMEM220,USP43,ZNF18"
TCGA.AA.A00A.01A	17	8633397	8700631	12	0.0454	NEUTRAL	NA	3	"CCDC42,MFSD6L,SPDYE4"
TCGA.AG.A025.01A	17	8638363	36955469	2356	-0.1494	NEUTRAL	NA	281	Too-Many
TCGA.CK.5914.01A	17	8647800	8725842	14	-0.0615	NEUTRAL	NA	4	"CCDC42,MFSD6L,PIK3R6,SPDYE4"
TCGA.AG.A016.01A	17	8656386	9541879	62	-0.2221	NEUTRAL	NA	7	"CFAP52,MFSD6L,NTN1,PIK3R5,PIK3R6,SPDYE4,STX8"
TCGA.AF.3914.01A	17	8706542	9086163	38	0.0388	NEUTRAL	NA	3	"NTN1,PIK3R5,PIK3R6"
TCGA.AA.A00N.01A	17	8730462	9569918	59	0.1724	NEUTRAL	NA	6	"CFAP52,NTN1,PIK3R5,PIK3R6,STX8,USP43"
TCGA.AG.3909.01A	17	8732970	9792718	83	-0.2841	NEUTRAL	NA	8	"CFAP52,DHRS7C,GLP2R,NTN1,PIK3R5,PIK3R6,STX8,USP43"
TCGA.AA.3977	17	8877945	46259253	8316	0.1405	NEUTRAL	NA	532	Too-Many
TCGA.AA.3968	17	9264327	10034414	358	-0.4713	NEUTRAL	NA	7	"CFAP52,DHRS7C,GAS7,GLP2R,RCVRN,STX8,USP43"
TCGA.AF.3914.01A	17	9281817	9536163	16	-0.0067	NEUTRAL	NA	2	"CFAP52,STX8"
TCGA.AA.A010.01A	17	9503344	9586108	16	-0.2591	NEUTRAL	NA	2	"CFAP52,USP43"
TCGA.AG.A01L.01A	17	9546308	9590068	8	-0.0142	NEUTRAL	NA	2	"CFAP52,USP43"
TCGA.AF.3914.01A	17	9569918	15531942	387	-0.1397	NEUTRAL	NA	33	"ADPRM,ARHGAP44,CDRT1,CDRT15,CDRT4,COX10,DHRS7C,DNAH9,ELAC2,GAS7,GLP2R,HS3ST3A1,HS3ST3B1,MAP2K4,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,PIRT,PMP22,RCVRN,SCO1,SHISA6,TEKT3,TMEM220,TRIM16,TVP23C,TVP23C-CDRT4,USP43,ZNF18"
TCGA.AG.4009.01A	17	9583501	10231135	63	-0.1369	NEUTRAL	NA	6	"DHRS7C,GAS7,GLP2R,MYH13,RCVRN,USP43"
TCGA.AG.A016.01A	17	9603430	10212502	48	-0.173	NEUTRAL	NA	6	"DHRS7C,GAS7,GLP2R,MYH13,RCVRN,USP43"
TCGA.CK.5914.01A	17	9694401	10558129	175	-0.2217	NEUTRAL	NA	10	"DHRS7C,GAS7,GLP2R,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,RCVRN"
TCGA.AA.A00D.01A	17	9739640	10584386	160	-0.2676	NEUTRAL	NA	10	"GAS7,GLP2R,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,RCVRN,SCO1"
TCGA.AA.A00Q.01A	17	9801365	9850155	12	-0.2149	NEUTRAL	NA	2	"GAS7,RCVRN"
TCGA.AG.3909.01A	17	9850155	10227292	23	-0.2082	NEUTRAL	NA	2	"GAS7,MYH13"
TCGA.AA.A00Q.01A	17	9862472	15458551	304	0.3761	NEUTRAL	NA	27	"ADPRM,ARHGAP44,CDRT15,CDRT4,COX10,DNAH9,ELAC2,GAS7,HS3ST3A1,HS3ST3B1,MAP2K4,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,PIRT,PMP22,SCO1,SHISA6,TEKT3,TMEM220,TVP23C,TVP23C-CDRT4,ZNF18"
TCGA.AG.3890	17	9870373	22235649	3290	-0.4648	NEUTRAL	NA	105	Too-Many
TCGA.A6.3808.01A	17	9939686	10310038	45	0.2277	NEUTRAL	NA	3	"GAS7,MYH13,MYH8"
TCGA.A6.2681	17	10016615	10051200	17	0.1526	NEUTRAL	NA	1	GAS7
TCGA.AA.3968	17	10035663	10185357	82	0.3524	NEUTRAL	NA	1	GAS7
TCGA.A6.2681	17	10051361	18876595	2806	-0.5066	NEUTRAL	NA	77	"ADORA2B,ADPRM,ALKBH5,ARHGAP44,ATPAF2,CCDC144A,CDRT1,CDRT15,CDRT4,CENPV,COPS3,COX10,DNAH9,DRG2,ELAC2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GAS7,GID4,HS3ST3A1,HS3ST3B1,LGALS9C,LLGL1,LRRC48,LRRC75A,MAP2K4,MED9,MIEF2,MPRIP,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,MYO15A,MYOCD,NCOR1,NT5M,PEMT,PIGL,PIRT,PLD6,PMP22,PRPSAP2,RAI1,RASD1,SCO1,SHISA6,SHMT1,SLC5A10,SMCR8,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM220,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ZNF18,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.3611.01A	17	10101475	10233652	13	-0.1311	NEUTRAL	NA	2	"GAS7,MYH13"
TCGA.AA.3968	17	10185971	10404045	64	-0.5096	NEUTRAL	NA	4	"MYH1,MYH13,MYH4,MYH8"
TCGA.AG.A01W.01A	17	10208342	10244383	11	-0.0394	NEUTRAL	NA	1	MYH13
TCGA.AA.3862.01A	17	10210277	15961184	390	-0.1167	NEUTRAL	NA	34	"ADORA2B,ADPRM,ARHGAP44,CDRT1,CDRT15,CDRT4,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,NCOR1,PIRT,PMP22,SCO1,SHISA6,TBC1D26,TEKT3,TMEM220,TRIM16,TTC19,TVP23C,TVP23C-CDRT4,ZNF18,ZNF286A,ZSWIM7"
TCGA.AG.A016.01A	17	10212897	10223438	8	0.2657	NEUTRAL	NA	1	MYH13
TCGA.AG.A016.01A	17	10224819	18005186	569	-0.1146	NEUTRAL	NA	58	"ADORA2B,ADPRM,ARHGAP44,ATPAF2,CCDC144A,CDRT1,CDRT15,CDRT4,CENPV,COPS3,COX10,DNAH9,DRG2,ELAC2,FLCN,GID4,HS3ST3A1,HS3ST3B1,LRRC48,LRRC75A,MAP2K4,MED9,MPRIP,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,NCOR1,NT5M,PEMT,PIGL,PIRT,PLD6,PMP22,RAI1,RASD1,SCO1,SHISA6,SREBF1,TBC1D26,TEKT3,TMEM220,TNFRSF13B,TOM1L2,TRIM16,TRPV2,TTC19,TVP23C,TVP23C-CDRT4,UBB,ZNF18,ZNF286A,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.3909.01A	17	10231135	10265386	12	0.2037	NEUTRAL	NA	1	MYH13
TCGA.AG.4009.01A	17	10233652	15522293	317	-0.3646	NEUTRAL	NA	27	"ADPRM,ARHGAP44,CDRT1,CDRT15,CDRT4,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,PIRT,PMP22,SCO1,SHISA6,TEKT3,TMEM220,TVP23C,TVP23C-CDRT4,ZNF18"
TCGA.AA.A010.01A	17	10243431	10267616	10	0.3104	NEUTRAL	NA	1	MYH13
TCGA.AG.A01W.01A	17	10253106	10291005	11	0.0547	NEUTRAL	NA	1	MYH13
TCGA.AG.3909.01A	17	10267616	10369842	45	-0.2404	NEUTRAL	NA	3	"MYH13,MYH4,MYH8"
TCGA.AA.A01D.01A	17	10302828	10412750	51	-0.1626	NEUTRAL	NA	3	"MYH1,MYH4,MYH8"
TCGA.AA.3861.01A	17	10309320	15640720	323	0.0525	NEUTRAL	NA	29	"ADPRM,ARHGAP44,CDRT1,CDRT15,CDRT4,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYH1,MYH2,MYH3,MYH4,MYH8,MYOCD,PIRT,PMP22,SCO1,SHISA6,TBC1D26,TEKT3,TMEM220,TRIM16,TVP23C,TVP23C-CDRT4,ZNF18,ZNF286A"
TCGA.A6.3808.01A	17	10312361	10728522	114	-0.4004	NEUTRAL	NA	9	"ADPRM,MYH1,MYH2,MYH3,MYH4,MYH8,PIRT,SCO1,TMEM220"
TCGA.A6.5661	17	10334952	70733679	14472	-0.2158	NEUTRAL	NA	723	Too-Many
TCGA.AG.A01W.01A	17	10336452	10344618	8	0.2477	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	10345111	10372849	20	-0.0112	NEUTRAL	NA	1	MYH4
TCGA.AG.3906.01A	17	10354605	10359751	9	-0.4963	NEUTRAL	NA	1	MYH4
TCGA.AA.3850	17	10361254	10795835	117	0.37825	NEUTRAL	NA	8	"ADPRM,MYH1,MYH2,MYH3,MYH4,PIRT,SCO1,TMEM220"
TCGA.AG.A01W.01A	17	10375666	17150552	438	-0.412	NEUTRAL	NA	44	"ADORA2B,ADPRM,ARHGAP44,CCDC144A,CDRT1,CDRT15,CDRT4,CENPV,COPS3,COX10,DNAH9,ELAC2,FLCN,HS3ST3A1,HS3ST3B1,LRRC75A,MAP2K4,MPRIP,MYH1,MYH2,MYH3,MYOCD,NCOR1,PIGL,PIRT,PLD6,PMP22,SCO1,SHISA6,TBC1D26,TEKT3,TMEM220,TNFRSF13B,TRIM16,TRPV2,TTC19,TVP23C,TVP23C-CDRT4,UBB,ZNF18,ZNF286A,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.A01L.01A	17	10395686	18098218	562	-0.4536	NEUTRAL	NA	57	"ADORA2B,ADPRM,ALKBH5,ARHGAP44,ATPAF2,CCDC144A,CDRT1,CDRT15,CDRT4,CENPV,COPS3,COX10,DNAH9,DRG2,ELAC2,FLCN,GID4,HS3ST3A1,HS3ST3B1,LRRC48,LRRC75A,MAP2K4,MED9,MPRIP,MYH1,MYH2,MYH3,MYO15A,MYOCD,NCOR1,NT5M,PEMT,PIGL,PIRT,PLD6,PMP22,RAI1,RASD1,SCO1,SHISA6,SREBF1,TBC1D26,TEKT3,TMEM220,TNFRSF13B,TOM1L2,TRIM16,TRPV2,TTC19,TVP23C,TVP23C-CDRT4,UBB,ZNF18,ZNF286A,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.A010.01A	17	10401942	10450740	37	0.2233	NEUTRAL	NA	2	"MYH1,MYH2"
TCGA.AG.3909.01A	17	10401942	10584386	63	-0.1289	NEUTRAL	NA	4	"MYH1,MYH2,MYH3,SCO1"
TCGA.AG.3891.01A	17	10406016	15877956	273	-0.4295	NEUTRAL	NA	28	"ADORA2B,ADPRM,ARHGAP44,CDRT1,CDRT15,CDRT4,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYH1,MYH2,MYH3,MYOCD,PIRT,PMP22,SCO1,SHISA6,TBC1D26,TEKT3,TMEM220,TRIM16,TVP23C,TVP23C-CDRT4,ZNF18,ZNF286A"
TCGA.AA.A01D.01A	17	10418098	36476490	1892	-0.3858	NEUTRAL	NA	255	Too-Many
TCGA.AA.A00N.01A	17	10539003	10558129	17	0.356	NEUTRAL	NA	1	MYH3
TCGA.AG.A00C.01A	17	10590017	11513678	16	-0.1318	NEUTRAL	NA	6	"ADPRM,DNAH9,PIRT,SCO1,SHISA6,TMEM220"
TCGA.AA.A010.01A	17	10608247	10728522	9	0.3037	NEUTRAL	NA	3	"ADPRM,PIRT,TMEM220"
TCGA.AA.3968	17	10656580	10944406	133	-0.3181	NEUTRAL	NA	1	PIRT
TCGA.AA.A00N.01A	17	10728522	11584018	26	0.1331	NEUTRAL	NA	3	"DNAH9,PIRT,SHISA6"
TCGA.AA.3941	17	10767129	15098981	1865	0.0477	NEUTRAL	NA	11	"ARHGAP44,CDRT15,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYOCD,SHISA6,ZNF18"
TCGA.AA.3850	17	10796543	15142754	1864	0.08995	NEUTRAL	NA	12	"ARHGAP44,CDRT15,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYOCD,PMP22,SHISA6,ZNF18"
TCGA.AG.3909.01A	17	11520680	11881233	65	-0.0476	NEUTRAL	NA	2	"DNAH9,ZNF18"
TCGA.AA.A00D.01A	17	11520680	15217357	137	-0.1087	NEUTRAL	NA	12	"ARHGAP44,CDRT15,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYOCD,PMP22,TEKT3,ZNF18"
TCGA.CK.5914.01A	17	11583097	12852429	94	-0.1196	NEUTRAL	NA	5	"ARHGAP44,DNAH9,MAP2K4,MYOCD,ZNF18"
TCGA.AG.3574	17	11651948	11909047	73	0.0367	NEUTRAL	NA	2	"DNAH9,ZNF18"
TCGA.AA.3549	17	11921943	15044803	1353	-0.3025	NEUTRAL	NA	8	"ARHGAP44,CDRT15,COX10,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYOCD"
TCGA.AD.6890	17	11956991	16617185	1665	-0.3774	NEUTRAL	NA	29	"ADORA2B,ARHGAP44,CCDC144A,CDRT1,CDRT15,CDRT4,CENPV,COX10,ELAC2,HS3ST3A1,HS3ST3B1,LRRC75A,MAP2K4,MYOCD,NCOR1,PIGL,PMP22,TBC1D26,TEKT3,TRIM16,TRPV2,TTC19,TVP23C,TVP23C-CDRT4,UBB,ZNF286A,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.3909.01A	17	11958156	12852429	34	-0.1621	NEUTRAL	NA	3	"ARHGAP44,MAP2K4,MYOCD"
TCGA.AG.3885	17	12097136	25343370	2455	-0.5	NEUTRAL	NA	90	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ARHGAP44,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT1,CDRT15,CDRT15L2,CDRT4,CENPV,COPS3,COX10,DHRS7B,DRG2,ELAC2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,HS3ST3A1,HS3ST3B1,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,MYOCD,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3968	17	12106353	13495748	571	-0.4139	NEUTRAL	NA	4	"ARHGAP44,ELAC2,HS3ST3A1,MYOCD"
TCGA.G4.6315	17	12190743	12212123	10	0.2004	NEUTRAL	NA	0	None
TCGA.NH.A6GC	17	12212123	81048658	16514	-0.508	NEUTRAL	NA	907	Too-Many
TCGA.G4.6315	17	12223142	21519099	2343	-0.4611	NEUTRAL	NA	89	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ARHGAP44,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT1,CDRT15,CDRT15L2,CDRT4,CENPV,COPS3,COX10,DHRS7B,DRG2,ELAC2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,HS3ST3A1,HS3ST3B1,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,MYOCD,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.3574	17	12851377	81048658	16307	0.0185	NEUTRAL	NA	906	Too-Many
TCGA.AG.A00C.01A	17	12855761	12920113	26	-0.3957	NEUTRAL	NA	2	"ARHGAP44,ELAC2"
TCGA.AA.A01Q.01A	17	12861986	12920113	20	-0.4328	NEUTRAL	NA	2	"ARHGAP44,ELAC2"
TCGA.AA.A00N.01A	17	12877384	12906747	14	0.224	NEUTRAL	NA	2	"ARHGAP44,ELAC2"
TCGA.AA.A01Q.01A	17	12920978	15531942	41	0.2936	NEUTRAL	NA	12	"CDRT1,CDRT15,CDRT4,COX10,ELAC2,HS3ST3A1,HS3ST3B1,PMP22,TEKT3,TRIM16,TVP23C,TVP23C-CDRT4"
TCGA.AG.3909.01A	17	12920978	15603566	53	-0.2675	NEUTRAL	NA	13	"CDRT1,CDRT15,CDRT4,COX10,ELAC2,HS3ST3A1,HS3ST3B1,PMP22,TEKT3,TRIM16,TVP23C,TVP23C-CDRT4,ZNF286A"
TCGA.AZ.6601	17	13157539	81048658	16159	-0.015	NEUTRAL	NA	904	Too-Many
TCGA.AG.A00Y.01A	17	13399519	20217237	632	-0.3497	NEUTRAL	NA	75	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,CCDC144A,CDRT1,CDRT15,CDRT4,CENPV,COPS3,COX10,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,HS3ST3A1,HS3ST3B1,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.EI.6885	17	13473520	81048658	15980	0.0044	NEUTRAL	NA	904	Too-Many
TCGA.AA.3968	17	13703095	14112965	152	-0.4192	NEUTRAL	NA	1	COX10
TCGA.CK.5914.01A	17	14005385	15499789	36	-0.2011	NEUTRAL	NA	9	"CDRT1,CDRT15,CDRT4,COX10,HS3ST3B1,PMP22,TEKT3,TVP23C,TVP23C-CDRT4"
TCGA.AA.A02H.01A	17	14005385	66511499	5108	-0.1254	NEUTRAL	NA	696	Too-Many
TCGA.AA.3955	17	14099741	15554560	643	-0.0269	NEUTRAL	NA	10	"CDRT1,CDRT15,CDRT4,COX10,HS3ST3B1,PMP22,TEKT3,TRIM16,TVP23C,TVP23C-CDRT4"
TCGA.AG.A032.01A	17	14139550	81006295	6250	-0.0273	NEUTRAL	NA	901	Too-Many
TCGA.AA.3968	17	14144979	14266937	52	0.3262	NEUTRAL	NA	1	HS3ST3B1
TCGA.AA.3968	17	14269381	14700189	246	-0.5107	NEUTRAL	NA	0	None
TCGA.AA.3864	17	14424696	21754121	1416	0.17	NEUTRAL	NA	82	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT1,CDRT15L2,CDRT4,CENPV,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3968	17	14702584	15554560	339	0.3273	NEUTRAL	NA	7	"CDRT1,CDRT4,PMP22,TEKT3,TRIM16,TVP23C,TVP23C-CDRT4"
TCGA.AG.3598	17	14931978	46888300	5930	0.0423	NEUTRAL	NA	516	Too-Many
TCGA.EI.7004	17	14986852	15074280	46	0.1035	NEUTRAL	NA	0	None
TCGA.AA.3549	17	15058990	15155056	44	0.1273	NEUTRAL	NA	1	PMP22
TCGA.EI.7004	17	15075243	25313689	1126	-0.3807	NEUTRAL	NA	83	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT1,CDRT15L2,CDRT4,CENPV,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3549	17	15155294	19623350	776	-0.2221	NEUTRAL	NA	67	"ADORA2B,ALDH3A2,ALKBH5,ATPAF2,B9D1,CCDC144A,CDRT1,CDRT4,CENPV,COPS3,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SREBF1,TBC1D26,TBC1D28,TEKT3,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.DC.4745	17	15194474	54163635	8019	-0.1008	NEUTRAL	NA	576	Too-Many
TCGA.AG.3906.01A	17	15217357	15522293	23	-0.3482	NEUTRAL	NA	5	"CDRT1,CDRT4,TEKT3,TVP23C,TVP23C-CDRT4"
TCGA.AA.A00D.01A	17	15222343	16552916	122	0.1841	NEUTRAL	NA	19	"ADORA2B,CDRT1,CDRT4,CENPV,LRRC75A,NCOR1,PIGL,TBC1D26,TEKT3,TRIM16,TRPV2,TTC19,TVP23C,TVP23C-CDRT4,UBB,ZNF286A,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.A00C.01A	17	15343442	21826060	661	-0.4349	NEUTRAL	NA	80	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT1,CDRT15L2,CDRT4,CENPV,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.A010.01A	17	15492268	15516879	9	0.0536	NEUTRAL	NA	1	CDRT1
TCGA.AA.A00N.01A	17	15515984	15586271	12	-0.4539	NEUTRAL	NA	2	"CDRT1,TRIM16"
TCGA.AA.A01Q.01A	17	15534879	15909744	17	-0.2067	NEUTRAL	NA	6	"ADORA2B,TBC1D26,TRIM16,TTC19,ZNF286A,ZSWIM7"
TCGA.AA.A00Q.01A	17	15539313	18862401	326	0.3089	NEUTRAL	NA	48	"ADORA2B,ALKBH5,ATPAF2,CCDC144A,CENPV,COPS3,DRG2,EVPLL,FBXW10,FLCN,FLII,GID4,LGALS9C,LLGL1,LRRC48,LRRC75A,MED9,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,SHMT1,SLC5A10,SMCR8,SREBF1,TBC1D26,TBC1D28,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,UBB,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3968	17	15557529	20665681	784	-0.3947	NEUTRAL	NA	67	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,CCDC144A,CDRT15L2,CENPV,COPS3,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,UBB,ULK2,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3955	17	15557529	21952567	951	-0.3893	NEUTRAL	NA	76	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT15L2,CENPV,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.A00N.01A	17	15638599	15848634	9	-0.2758	NEUTRAL	NA	2	"ADORA2B,TBC1D26"
TCGA.AA.A010.01A	17	15638599	15848634	9	0.3179	NEUTRAL	NA	2	"ADORA2B,TBC1D26"
TCGA.AA.3861.01A	17	15641314	16608428	115	-0.3873	NEUTRAL	NA	13	"ADORA2B,CCDC144A,CENPV,LRRC75A,NCOR1,PIGL,TBC1D26,TRPV2,TTC19,UBB,ZNF287,ZNF624,ZSWIM7"
TCGA.CI.6620	17	15659326	25402268	975	-0.4713	NEUTRAL	NA	74	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT15L2,CENPV,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TRPV2,TTC19,TVP23B,UBB,ULK2,USP22,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3856	17	15685232	18917512	561	-0.355	NEUTRAL	NA	46	"ADORA2B,ALKBH5,ATPAF2,CCDC144A,CENPV,COPS3,DRG2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,LGALS9C,LLGL1,LRRC48,LRRC75A,MED9,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,SHMT1,SLC5A10,SMCR8,SREBF1,TBC1D28,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TRPV2,TTC19,TVP23B,UBB,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.CM.4747	17	15872974	81048658	15069	-0.0397	NEUTRAL	NA	891	Too-Many
TCGA.AG.3891.01A	17	15881309	15909744	10	0.1384	NEUTRAL	NA	2	"TTC19,ZSWIM7"
TCGA.AA.A00N.01A	17	15928311	15930651	3	0.1661	NEUTRAL	NA	1	TTC19
TCGA.AF.3914.01A	17	15928311	15943695	7	0.2209	NEUTRAL	NA	2	"NCOR1,TTC19"
TCGA.AG.3909.01A	17	15928311	15976726	23	-0.3265	NEUTRAL	NA	2	"NCOR1,TTC19"
TCGA.CK.5914.01A	17	15928311	15978799	24	-0.2105	NEUTRAL	NA	2	"NCOR1,TTC19"
TCGA.AA.A01Q.01A	17	15928311	16203148	51	0.2927	NEUTRAL	NA	3	"NCOR1,PIGL,TTC19"
TCGA.AG.3891.01A	17	15928311	18111513	293	-0.2633	NEUTRAL	NA	28	"ALKBH5,ATPAF2,CCDC144A,CENPV,COPS3,DRG2,FLCN,GID4,LRRC48,LRRC75A,MED9,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,RAI1,RASD1,SREBF1,TNFRSF13B,TOM1L2,TRPV2,TTC19,UBB,ZNF287,ZNF624"
TCGA.A6.3808.01A	17	15929827	16593733	96	0.1777	NEUTRAL	NA	10	"CCDC144A,CENPV,LRRC75A,NCOR1,PIGL,TRPV2,TTC19,UBB,ZNF287,ZNF624"
TCGA.AA.A010.01A	17	15938031	16229062	54	0.0987	NEUTRAL	NA	2	"NCOR1,PIGL"
TCGA.AF.3914.01A	17	15947669	16097749	41	-0.3635	NEUTRAL	NA	1	NCOR1
TCGA.AG.4009.01A	17	16055190	16137248	9	-0.4281	NEUTRAL	NA	2	"NCOR1,PIGL"
TCGA.AF.2689	17	16058110	25313689	911	-0.4061	NEUTRAL	NA	71	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT15L2,CENPV,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TRPV2,TVP23B,UBB,ULK2,USP22,ZNF286B,ZNF287,ZNF624"
TCGA.AA.A00N.01A	17	16062022	16455123	42	-0.3585	NEUTRAL	NA	7	"CENPV,LRRC75A,NCOR1,PIGL,TRPV2,UBB,ZNF287"
TCGA.AA.A01Q.01A	17	16216798	16552916	41	-0.2966	NEUTRAL	NA	7	"CENPV,LRRC75A,PIGL,TRPV2,UBB,ZNF287,ZNF624"
TCGA.AA.A010.01A	17	16256301	17494795	139	0.2753	NEUTRAL	NA	16	"CCDC144A,CENPV,COPS3,FLCN,LRRC75A,MED9,MPRIP,NT5M,PEMT,PLD6,RASD1,TNFRSF13B,TRPV2,UBB,ZNF287,ZNF624"
TCGA.AG.4009.01A	17	16285183	17078555	77	-0.2327	NEUTRAL	NA	8	"CCDC144A,LRRC75A,MPRIP,TNFRSF13B,TRPV2,UBB,ZNF287,ZNF624"
TCGA.AF.3914.01A	17	16285183	17080523	81	-0.1725	NEUTRAL	NA	8	"CCDC144A,LRRC75A,MPRIP,TNFRSF13B,TRPV2,UBB,ZNF287,ZNF624"
TCGA.CK.5914.01A	17	16323401	16342409	13	-0.1535	NEUTRAL	NA	1	TRPV2
TCGA.AA.A01C.01A	17	16326744	43348398	3174	-0.159	NEUTRAL	NA	448	Too-Many
TCGA.AA.3842	17	16414855	81048658	14983	-0.4384	NEUTRAL	NA	882	Too-Many
TCGA.AZ.4684.01A	17	16455123	16630792	21	0.1611	NEUTRAL	NA	3	"CCDC144A,ZNF287,ZNF624"
TCGA.AA.3509.01A	17	16455123	16675862	29	-0.1502	NEUTRAL	NA	3	"CCDC144A,ZNF287,ZNF624"
TCGA.DM.A28M.01A	17	16525555	16608428	9	0.363	NEUTRAL	NA	2	"CCDC144A,ZNF624"
TCGA.AG.3909.01A	17	16596250	18144718	214	-0.4963	NEUTRAL	NA	20	"ALKBH5,ATPAF2,CCDC144A,COPS3,DRG2,FLCN,GID4,LLGL1,LRRC48,MED9,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SREBF1,TNFRSF13B,TOM1L2"
TCGA.AA.A00N.01A	17	16608428	16748648	23	-0.438	NEUTRAL	NA	1	CCDC144A
TCGA.DM.A28M.01A	17	16614966	18392201	323	0.166	NEUTRAL	NA	27	"ALKBH5,ATPAF2,CCDC144A,COPS3,DRG2,EVPLL,FLCN,FLII,GID4,LGALS9C,LLGL1,LRRC48,MED9,MIEF2,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SHMT1,SMCR8,SREBF1,TNFRSF13B,TOM1L2,TOP3A"
TCGA.CK.5914.01A	17	16664722	17046818	31	-0.0829	NEUTRAL	NA	3	"CCDC144A,MPRIP,TNFRSF13B"
TCGA.AA.A01Q.01A	17	16747506	16999990	12	0.2941	NEUTRAL	NA	2	"MPRIP,TNFRSF13B"
TCGA.AA.3862.01A	17	16747506	18041422	164	-0.3842	NEUTRAL	NA	17	"ATPAF2,COPS3,DRG2,FLCN,GID4,LRRC48,MED9,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SREBF1,TNFRSF13B,TOM1L2"
TCGA.AA.3861.01A	17	16748648	18074904	192	-0.3267	NEUTRAL	NA	17	"ATPAF2,COPS3,DRG2,FLCN,GID4,LRRC48,MED9,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SREBF1,TNFRSF13B,TOM1L2"
TCGA.AD.6890	17	16763554	21527045	762	-0.4042	NEUTRAL	NA	61	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NATD1,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.G4.6297	17	16763554	22030410	801	-0.2435	NEUTRAL	NA	62	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.AA.3514	17	16801492	81048658	14949	0.0208	NEUTRAL	NA	879	Too-Many
TCGA.AA.A00D.01A	17	16842874	17046818	12	-0.4519	NEUTRAL	NA	2	"MPRIP,TNFRSF13B"
TCGA.NH.A8F8	17	16868560	81048658	14909	0.0022	NEUTRAL	NA	879	Too-Many
TCGA.AA.A00N.01A	17	16892180	16960884	4	-0.4043	NEUTRAL	NA	1	MPRIP
TCGA.AA.A01Q.01A	17	17030018	18034022	122	-0.2956	NEUTRAL	NA	16	"ATPAF2,COPS3,DRG2,FLCN,GID4,LRRC48,MED9,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SREBF1,TOM1L2"
TCGA.AA.A00N.01A	17	17049277	17766006	89	-0.5046	NEUTRAL	NA	11	"COPS3,FLCN,MED9,MPRIP,NT5M,PEMT,PLD6,RAI1,RASD1,SREBF1,TOM1L2"
TCGA.AA.A00D.01A	17	17049277	18692620	176	0.0895	NEUTRAL	NA	30	"ALKBH5,ATPAF2,COPS3,DRG2,EVPLL,FBXW10,FLCN,FLII,GID4,LGALS9C,LLGL1,LRRC48,MED9,MIEF2,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SHMT1,SMCR8,SREBF1,TBC1D28,TOM1L2,TOP3A,TRIM16L,TVP23B,ZNF286B"
TCGA.AG.4009.01A	17	17079704	18082031	148	-0.4703	NEUTRAL	NA	16	"ATPAF2,COPS3,DRG2,FLCN,GID4,LRRC48,MED9,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SREBF1,TOM1L2"
TCGA.AF.3914.01A	17	17106043	18111513	159	-0.2251	NEUTRAL	NA	16	"ALKBH5,ATPAF2,COPS3,DRG2,FLCN,GID4,LRRC48,MED9,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SREBF1,TOM1L2"
TCGA.AG.A01W.01A	17	17167158	17660946	24	0.0659	NEUTRAL	NA	6	"COPS3,MED9,NT5M,PEMT,RAI1,RASD1"
TCGA.AG.A01W.01A	17	17661745	18073941	118	-0.3648	NEUTRAL	NA	8	"ATPAF2,DRG2,GID4,LRRC48,MYO15A,RAI1,SREBF1,TOM1L2"
TCGA.AG.3906.01A	17	17707018	17750902	7	0.2816	NEUTRAL	NA	3	"RAI1,SREBF1,TOM1L2"
TCGA.AA.3930.01A	17	17722327	18043802	77	-0.3815	NEUTRAL	NA	7	"ATPAF2,DRG2,GID4,LRRC48,MYO15A,SREBF1,TOM1L2"
TCGA.AA.3939.01A	17	17722327	33328891	1385	0.0781	NEUTRAL	NA	145	Too-Many
TCGA.AA.A010.01A	17	17740017	17772632	9	-0.4262	NEUTRAL	NA	2	"SREBF1,TOM1L2"
TCGA.CK.5914.01A	17	17750902	17787899	11	0.0329	NEUTRAL	NA	1	TOM1L2
TCGA.AG.3906.01A	17	17752057	18009685	47	-0.4478	NEUTRAL	NA	5	"ATPAF2,DRG2,GID4,LRRC48,TOM1L2"
TCGA.AA.A00N.01A	17	17796947	18195930	149	-0.5145	NEUTRAL	NA	11	"ALKBH5,ATPAF2,DRG2,FLII,GID4,LLGL1,LRRC48,MIEF2,MYO15A,TOM1L2,TOP3A"
TCGA.AA.A010.01A	17	17948399	17991273	7	-0.1356	NEUTRAL	NA	2	"DRG2,GID4"
TCGA.AA.3819	17	17980670	76058681	13543	0.0341	NEUTRAL	NA	764	Too-Many
TCGA.AG.A016.01A	17	18029610	18133238	45	-0.1714	NEUTRAL	NA	3	"ALKBH5,LLGL1,MYO15A"
TCGA.AG.3906.01A	17	18034504	18087511	45	-0.4896	NEUTRAL	NA	2	"ALKBH5,MYO15A"
TCGA.AA.3862.01A	17	18042078	18286774	113	-0.0292	NEUTRAL	NA	9	"ALKBH5,EVPLL,FLII,LLGL1,MIEF2,MYO15A,SHMT1,SMCR8,TOP3A"
TCGA.AA.3930.01A	17	18045346	18180972	73	-0.4815	NEUTRAL	NA	6	"ALKBH5,FLII,LLGL1,MIEF2,MYO15A,TOP3A"
TCGA.AA.A010.01A	17	18046828	18087511	32	-0.3648	NEUTRAL	NA	2	"ALKBH5,MYO15A"
TCGA.CA.6719	17	18051974	27341433	811	0.3173	NEUTRAL	NA	84	"AKAP10,ALDH3A1,ALDH3A2,ALDOC,ALKBH5,B9D1,C17orf51,CCDC144NL,CDRT15L2,DHRS13,DHRS7B,EPN2,ERAL1,EVPLL,FAM222B,FAM83G,FBXW10,FLII,FLOT2,FOXN1,GRAP,GRAPL,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LYRM9,MAP2K3,MAPK7,MFAP4,MIEF2,MTRNR2L1,MYO15A,NARR,NATD1,NEK8,NLK,NOS2,PHF12,PIGS,POLDIP2,PROCA1,PRPSAP2,RAB34,RNF112,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SHMT1,SLC13A2,SLC46A1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPAG5,SPECC1,SUPT6H,TBC1D28,TLCD1,TMEM11,TMEM199,TMEM97,TNFAIP1,TOP3A,TRAF4,TRIM16L,TVP23B,ULK2,UNC119,USP22,VTN,WSB1,ZNF286B"
TCGA.AA.3561	17	18051974	81048658	14656	0.0315	NEUTRAL	NA	863	Too-Many
TCGA.AA.3861.01A	17	18075419	30293090	1048	0.1139	NEUTRAL	NA	117	Too-Many
TCGA.AG.A01W.01A	17	18076478	18118790	32	0.034	NEUTRAL	NA	2	"ALKBH5,MYO15A"
TCGA.AG.A01L.01A	17	18110082	18158441	27	-0.0055	NEUTRAL	NA	3	"ALKBH5,FLII,LLGL1"
TCGA.AG.3891.01A	17	18141719	18395716	70	-0.0284	NEUTRAL	NA	8	"EVPLL,FLII,LGALS9C,LLGL1,MIEF2,SHMT1,SMCR8,TOP3A"
TCGA.AF.3914.01A	17	18152432	18193820	21	-0.4067	NEUTRAL	NA	3	"FLII,MIEF2,TOP3A"
TCGA.AA.A01Q.01A	17	18159775	18194108	14	0.0413	NEUTRAL	NA	3	"FLII,MIEF2,TOP3A"
TCGA.AG.A01L.01A	17	18166360	42158084	2669	-0.5071	NEUTRAL	NA	390	Too-Many
TCGA.AG.A016.01A	17	18180972	18395716	42	-0.1843	NEUTRAL	NA	5	"EVPLL,LGALS9C,SHMT1,SMCR8,TOP3A"
TCGA.AA.A010.01A	17	18193820	18880848	101	0.2087	NEUTRAL	NA	13	"EVPLL,FAM83G,FBXW10,LGALS9C,PRPSAP2,SHMT1,SLC5A10,SMCR8,TBC1D28,TOP3A,TRIM16L,TVP23B,ZNF286B"
TCGA.AA.3930.01A	17	18205151	18525761	44	-0.1827	NEUTRAL	NA	5	"EVPLL,LGALS9C,SHMT1,SMCR8,TOP3A"
TCGA.AF.3914.01A	17	18210142	18219652	6	-0.1977	NEUTRAL	NA	2	"SMCR8,TOP3A"
TCGA.AF.3914.01A	17	18250758	18708766	65	-0.1661	NEUTRAL	NA	8	"EVPLL,FBXW10,LGALS9C,SHMT1,TBC1D28,TRIM16L,TVP23B,ZNF286B"
TCGA.AG.3909.01A	17	18259150	18528409	21	-0.1823	NEUTRAL	NA	3	"EVPLL,LGALS9C,SHMT1"
TCGA.AA.A01Q.01A	17	18284187	18862868	46	0.0713	NEUTRAL	NA	9	"EVPLL,FBXW10,LGALS9C,PRPSAP2,SLC5A10,TBC1D28,TRIM16L,TVP23B,ZNF286B"
TCGA.DM.A282.01A	17	18331668	18397494	13	0.0039	NEUTRAL	NA	1	LGALS9C
TCGA.AA.3509.01A	17	18392201	18511160	11	0.1271	NEUTRAL	NA	1	LGALS9C
TCGA.F5.6811.01A	17	18427447	20295358	229	-0.0554	NEUTRAL	NA	24	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TBC1D28,TRIM16L,TVP23B,ULK2,ZNF286B"
TCGA.AG.A01W.01A	17	18438715	18579266	21	-0.2522	NEUTRAL	NA	2	"TBC1D28,ZNF286B"
TCGA.AA.A02K.01A	17	18486714	18863821	56	-0.2815	NEUTRAL	NA	7	"FBXW10,PRPSAP2,SLC5A10,TBC1D28,TRIM16L,TVP23B,ZNF286B"
TCGA.AG.4009.01A	17	18486722	18528409	10	-0.4968	NEUTRAL	NA	0	None
TCGA.AG.A016.01A	17	18511160	19458858	103	-0.144	NEUTRAL	NA	18	"B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC5A10,TBC1D28,TRIM16L,TVP23B,ZNF286B"
TCGA.DM.A28M.01A	17	18511160	20224598	222	0.1111	NEUTRAL	NA	24	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TBC1D28,TRIM16L,TVP23B,ULK2,ZNF286B"
TCGA.A6.3808.01A	17	18528409	20224598	215	-0.3975	NEUTRAL	NA	24	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TBC1D28,TRIM16L,TVP23B,ULK2,ZNF286B"
TCGA.AA.3862.01A	17	18528409	30302474	971	-0.0331	NEUTRAL	NA	107	Too-Many
TCGA.AA.3930.01A	17	18544318	18855472	39	-0.1313	NEUTRAL	NA	7	"FBXW10,PRPSAP2,SLC5A10,TBC1D28,TRIM16L,TVP23B,ZNF286B"
TCGA.DM.A1HA	17	18562719	81048658	14597	0.0187	NEUTRAL	NA	852	Too-Many
TCGA.AG.3891.01A	17	18565203	18769110	28	-0.1904	NEUTRAL	NA	5	"FBXW10,PRPSAP2,TRIM16L,TVP23B,ZNF286B"
TCGA.AG.4009.01A	17	18609980	18770533	27	-0.2258	NEUTRAL	NA	4	"FBXW10,PRPSAP2,TRIM16L,TVP23B"
TCGA.AG.A01W.01A	17	18625242	20048962	168	-0.2986	NEUTRAL	NA	22	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TRIM16L,TVP23B,ULK2"
TCGA.AG.3909.01A	17	18630829	18671795	13	-0.1398	NEUTRAL	NA	2	"FBXW10,TRIM16L"
TCGA.AA.A00N.01A	17	18673221	18785844	16	-0.4059	NEUTRAL	NA	3	"FBXW10,PRPSAP2,TVP23B"
TCGA.AY.4070	17	18699070	28807449	929	0.0513	NEUTRAL	NA	89	"ABHD15,AKAP10,ALDH3A1,ALDH3A2,ALDOC,ANKRD13B,B9D1,BLMH,C17orf51,CCDC144NL,CDRT15L2,CORO6,CPD,CRYBA1,DHRS13,DHRS7B,EFCAB5,EPN2,ERAL1,FAM222B,FAM83G,FLOT2,FOXN1,GIT1,GOSR1,GRAP,GRAPL,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LGALS9B,LOC388436,LOC79999,LYRM9,MAP2K3,MAPK7,MFAP4,MTRNR2L1,MYO18A,NARR,NATD1,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PRPSAP2,RAB34,RNF112,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC47A1,SLC47A2,SLC5A10,SLC6A4,SPAG5,SPECC1,SSH2,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM11,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,TVP23B,ULK2,UNC119,USP22,VTN,WSB1"
TCGA.AG.3891.01A	17	18770533	18793073	5	0.2874	NEUTRAL	NA	1	PRPSAP2
TCGA.AA.A00D.01A	17	18793073	19463460	50	-0.0194	NEUTRAL	NA	13	"B9D1,EPN2,FAM83G,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC5A10"
TCGA.AG.4009.01A	17	18814364	19231982	29	-0.2023	NEUTRAL	NA	8	"EPN2,FAM83G,GRAP,GRAPL,LOC388436,LOC79999,PRPSAP2,SLC5A10"
TCGA.AG.3891.01A	17	18814364	19232819	30	-0.1506	NEUTRAL	NA	8	"EPN2,FAM83G,GRAP,GRAPL,LOC388436,LOC79999,PRPSAP2,SLC5A10"
TCGA.AF.3914.01A	17	18814364	21081496	191	-0.2217	NEUTRAL	NA	24	"AKAP10,ALDH3A1,ALDH3A2,B9D1,CCDC144NL,CDRT15L2,DHRS7B,EPN2,FAM83G,GRAP,GRAPL,LGALS9B,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,ULK2,USP22"
TCGA.DY.A1DG	17	18833061	19168911	20	0.0711	NEUTRAL	NA	8	"EPN2,FAM83G,GRAP,GRAPL,LOC388436,LOC79999,PRPSAP2,SLC5A10"
TCGA.A6.2685	17	18841589	81048658	14508	-0.0016	NEUTRAL	NA	847	Too-Many
TCGA.AH.6644	17	18848497	81048658	14529	-0.0437	NEUTRAL	NA	847	Too-Many
TCGA.AG.A01J.01A	17	18861944	81042842	6010	-0.1727	NEUTRAL	NA	847	Too-Many
TCGA.AA.A00Q.01A	17	18862868	18923419	11	-0.2591	NEUTRAL	NA	2	"FAM83G,SLC5A10"
TCGA.AA.3930.01A	17	18863820	21826060	223	-0.398	NEUTRAL	NA	29	"AKAP10,ALDH3A1,ALDH3A2,B9D1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,EPN2,FAM83G,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LOC388436,LOC79999,MAP2K3,MAPK7,MFAP4,NATD1,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TMEM11,ULK2,USP22"
TCGA.AA.A00N.01A	17	18882807	19470357	63	-0.38	NEUTRAL	NA	12	"B9D1,EPN2,FAM83G,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,RNF112,SLC47A1,SLC5A10"
TCGA.A6.2681	17	18890761	19594839	86	-0.0611	NEUTRAL	NA	14	"ALDH3A2,B9D1,EPN2,FAM83G,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,RNF112,SLC47A1,SLC47A2,SLC5A10"
TCGA.AA.3870	17	18890761	39896061	3899	0.0809	NEUTRAL	NA	304	Too-Many
TCGA.AA.A02W.01A	17	18891508	26084220	204	-0.2753	NEUTRAL	NA	34	"AKAP10,ALDH3A1,ALDH3A2,B9D1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,EPN2,FAM83G,GRAP,GRAPL,KCNJ12,KCNJ18,KSR1,LGALS9,LGALS9B,LOC388436,LOC79999,MAP2K3,MAPK7,MFAP4,MTRNR2L1,NATD1,NOS2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TMEM11,ULK2,USP22,WSB1"
TCGA.AA.A02K.01A	17	18906814	20217268	151	-0.3242	NEUTRAL	NA	18	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,FAM83G,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,ULK2"
TCGA.AA.3814	17	18917236	81048658	14556	0.3234	NEUTRAL	NA	846	Too-Many
TCGA.AA.3692	17	18917914	19924088	147	0.2025	NEUTRAL	NA	17	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,ULK2"
TCGA.AA.A00Q.01A	17	18925255	19615950	65	0.3317	NEUTRAL	NA	12	"ALDH3A2,B9D1,EPN2,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,RNF112,SLC47A1,SLC47A2"
TCGA.AA.A01Q.01A	17	18925255	19642782	77	-0.1703	NEUTRAL	NA	13	"ALDH3A1,ALDH3A2,B9D1,EPN2,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,RNF112,SLC47A1,SLC47A2"
TCGA.AA.A010.01A	17	18945073	19437204	41	0.3753	NEUTRAL	NA	10	"B9D1,EPN2,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,RNF112,SLC47A1"
TCGA.A6.3810.01A	17	19035908	27044211	477	0.0415	NEUTRAL	NA	55	"AKAP10,ALDH3A1,ALDH3A2,ALDOC,B9D1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,EPN2,FOXN1,GRAPL,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LGALS9B,LOC388436,LOC79999,LYRM9,MAP2K3,MAPK7,MFAP4,MTRNR2L1,NARR,NATD1,NLK,NOS2,PIGS,POLDIP2,PROCA1,RAB34,RNF112,SARM1,SDF2,SEBOX,SGK494,SLC13A2,SLC46A1,SLC47A1,SLC47A2,SPAG5,SPECC1,SUPT6H,TMEM11,TMEM199,TMEM97,TNFAIP1,ULK2,UNC119,USP22,VTN,WSB1"
TCGA.A6.5666	17	19168911	21717444	353	0.3629	NEUTRAL	NA	23	"AKAP10,ALDH3A1,ALDH3A2,B9D1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,EPN2,KCNJ12,KCNJ18,LGALS9B,MAP2K3,MAPK7,MFAP4,NATD1,RNF112,SLC47A1,SLC47A2,SPECC1,TMEM11,ULK2,USP22"
TCGA.AA.3712	17	19168911	25455184	417	0.264	NEUTRAL	NA	24	"AKAP10,ALDH3A1,ALDH3A2,B9D1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,EPN2,KCNJ12,KCNJ18,LGALS9B,MAP2K3,MAPK7,MFAP4,MTRNR2L1,NATD1,RNF112,SLC47A1,SLC47A2,SPECC1,TMEM11,ULK2,USP22"
TCGA.AA.3855	17	19168911	70393079	11667	0.0237	NEUTRAL	NA	644	Too-Many
TCGA.A6.6782	17	19168911	81048658	14489	0.0921	NEUTRAL	NA	841	Too-Many
TCGA.AF.4110	17	19168911	81048658	14541	-0.2131	NEUTRAL	NA	841	Too-Many
TCGA.AZ.6605	17	19168911	81048658	14493	0.0532	NEUTRAL	NA	841	Too-Many
TCGA.3L.AA1B	17	19177062	81048658	14536	0.1117	NEUTRAL	NA	841	Too-Many
TCGA.AH.6549.01A	17	19186392	21825440	201	-0.4185	NEUTRAL	NA	23	"AKAP10,ALDH3A1,ALDH3A2,B9D1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,EPN2,KCNJ12,KCNJ18,LGALS9B,MAP2K3,MAPK7,MFAP4,NATD1,RNF112,SLC47A1,SLC47A2,SPECC1,TMEM11,ULK2,USP22"
TCGA.F4.6808	17	19234474	81048658	14508	0	NEUTRAL	NA	841	Too-Many
TCGA.AG.3891.01A	17	19235119	19315764	20	-0.4756	NEUTRAL	NA	5	"B9D1,EPN2,MAPK7,MFAP4,RNF112"
TCGA.AG.4009.01A	17	19282163	19318837	17	-0.197	NEUTRAL	NA	3	"MAPK7,MFAP4,RNF112"
TCGA.AA.3697	17	19293726	81048658	14514	0.1208	NEUTRAL	NA	837	Too-Many
TCGA.AZ.4682	17	19310064	81048658	14504	0.0091	NEUTRAL	NA	837	Too-Many
TCGA.AZ.5407	17	19310064	81048658	14522	0.1529	NEUTRAL	NA	837	Too-Many
TCGA.AG.3891.01A	17	19316272	19606352	34	-0.06	NEUTRAL	NA	4	"ALDH3A2,RNF112,SLC47A1,SLC47A2"
TCGA.DM.A28F	17	19370706	81048658	14483	0.0431	NEUTRAL	NA	836	Too-Many
TCGA.AA.A010.01A	17	19445658	19576425	23	-0.3185	NEUTRAL	NA	2	"ALDH3A2,SLC47A1"
TCGA.AG.A016.01A	17	19463460	19642782	32	0.1738	NEUTRAL	NA	4	"ALDH3A1,ALDH3A2,SLC47A1,SLC47A2"
TCGA.AD.6888	17	19514755	19584084	18	-0.4964	NEUTRAL	NA	2	"ALDH3A2,SLC47A2"
TCGA.AG.4009.01A	17	19555802	19827672	63	-0.3865	NEUTRAL	NA	5	"AKAP10,ALDH3A1,ALDH3A2,SLC47A2,ULK2"
TCGA.DY.A1DG	17	19559094	21519099	277	-0.5098	NEUTRAL	NA	17	"AKAP10,ALDH3A1,ALDH3A2,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,SLC47A2,SPECC1,TMEM11,ULK2,USP22"
TCGA.AA.3856	17	19559094	81048658	14483	0.2403	NEUTRAL	NA	835	Too-Many
TCGA.DM.A282.01A	17	19561010	81051974	7253	0.0104	NEUTRAL	NA	835	Too-Many
TCGA.AA.A010.01A	17	19578782	19748557	47	0.2624	NEUTRAL	NA	4	"ALDH3A1,ALDH3A2,SLC47A2,ULK2"
TCGA.A6.2681	17	19612495	28604288	792	-0.478	NEUTRAL	NA	71	"ABHD15,AKAP10,ALDH3A1,ALDOC,ANKRD13B,BLMH,C17orf51,CCDC144NL,CDRT15L2,CORO6,CRYBA1,DHRS13,DHRS7B,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LGALS9B,LYRM9,MAP2K3,MTRNR2L1,MYO18A,NARR,NATD1,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC47A2,SLC6A4,SPAG5,SPECC1,SSH2,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM11,TMEM199,TMEM97,TNFAIP1,TP53I13,TRAF4,ULK2,UNC119,USP22,VTN,WSB1"
TCGA.AA.A00L.01A	17	19617091	19646498	12	0.0394	NEUTRAL	NA	2	"ALDH3A1,SLC47A2"
TCGA.AA.A00Q.01A	17	19617091	19685182	17	0.004	NEUTRAL	NA	3	"ALDH3A1,SLC47A2,ULK2"
TCGA.AA.A00D.01A	17	19617091	19700691	22	0.0104	NEUTRAL	NA	3	"ALDH3A1,SLC47A2,ULK2"
TCGA.AG.3891.01A	17	19618380	19680846	13	-0.2096	NEUTRAL	NA	3	"ALDH3A1,SLC47A2,ULK2"
TCGA.A6.5667	17	19673879	20817235	130	0.1113	NEUTRAL	NA	6	"AKAP10,CCDC144NL,CDRT15L2,LGALS9B,SPECC1,ULK2"
TCGA.AG.A016.01A	17	19679590	19698893	8	-0.2601	NEUTRAL	NA	1	ULK2
TCGA.AA.A01Q.01A	17	19679590	21188156	75	0.179	NEUTRAL	NA	11	"AKAP10,CCDC144NL,CDRT15L2,DHRS7B,LGALS9B,MAP2K3,NATD1,SPECC1,TMEM11,ULK2,USP22"
TCGA.AG.3891.01A	17	19683734	19720015	13	-0.5144	NEUTRAL	NA	1	ULK2
TCGA.CK.5914.01A	17	19684252	19713645	11	0.0412	NEUTRAL	NA	1	ULK2
TCGA.AG.A016.01A	17	19699367	19812465	19	0.2467	NEUTRAL	NA	2	"AKAP10,ULK2"
TCGA.AA.A00D.01A	17	19702762	19871654	29	0.3646	NEUTRAL	NA	2	"AKAP10,ULK2"
TCGA.AG.3891.01A	17	19728355	19827672	16	0.013	NEUTRAL	NA	2	"AKAP10,ULK2"
TCGA.AA.A00Q.01A	17	19748557	29159302	482	0.3274	NEUTRAL	NA	75	"ABHD15,AKAP10,ALDOC,ANKRD13B,ATAD5,BLMH,C17orf51,CCDC144NL,CDRT15L2,CORO6,CPD,CRLF3,CRYBA1,DHRS13,DHRS7B,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LGALS9B,LYRM9,MAP2K3,MTRNR2L1,MYO18A,NARR,NATD1,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SPECC1,SSH2,SUPT6H,TAOK1,TBC1D29,TIAF1,TLCD1,TMEM11,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,ULK2,UNC119,USP22,VTN,WSB1"
TCGA.AG.A016.01A	17	19813189	21217404	66	-0.0699	NEUTRAL	NA	10	"AKAP10,CCDC144NL,CDRT15L2,DHRS7B,LGALS9B,MAP2K3,NATD1,SPECC1,TMEM11,USP22"
TCGA.AA.A010.01A	17	19827672	19871654	10	-0.4535	NEUTRAL	NA	1	AKAP10
TCGA.AG.3891.01A	17	19835067	21826060	77	-0.3969	NEUTRAL	NA	13	"AKAP10,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,SPECC1,TMEM11,USP22"
TCGA.AA.A00N.01A	17	19880852	21147372	61	0.3432	NEUTRAL	NA	9	"AKAP10,CCDC144NL,CDRT15L2,DHRS7B,LGALS9B,NATD1,SPECC1,TMEM11,USP22"
TCGA.AA.3692	17	19927698	25313689	258	-0.2003	NEUTRAL	NA	13	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,MTRNR2L1,NATD1,SPECC1,TMEM11,USP22"
TCGA.AA.A00D.01A	17	19999918	21320498	42	-0.094	NEUTRAL	NA	11	"CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,SPECC1,TMEM11,USP22"
TCGA.AG.3909.01A	17	19999918	25930796	84	-0.3867	NEUTRAL	NA	15	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,KSR1,LGALS9B,MAP2K3,MTRNR2L1,NATD1,SPECC1,TMEM11,USP22,WSB1"
TCGA.AG.4009.01A	17	20013693	21319226	64	-0.345	NEUTRAL	NA	11	"CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,SPECC1,TMEM11,USP22"
TCGA.F5.6810	17	20030959	81048658	14360	-0.0199	NEUTRAL	NA	830	Too-Many
TCGA.AG.A01W.01A	17	20071302	23747031	183	-0.0359	NEUTRAL	NA	13	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,MTRNR2L1,NATD1,SPECC1,TMEM11,USP22"
TCGA.A6.5659	17	20086561	81048658	13324	0.1056	NEUTRAL	NA	830	Too-Many
TCGA.CK.5914.01A	17	20135505	20370667	26	-0.0287	NEUTRAL	NA	2	"LGALS9B,SPECC1"
TCGA.G4.6298	17	20148407	81048658	14360	0.0086	NEUTRAL	NA	830	Too-Many
TCGA.AA.3695	17	20215904	25343370	209	0.0023	NEUTRAL	NA	13	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,MTRNR2L1,NATD1,SPECC1,TMEM11,USP22"
TCGA.AZ.6607	17	20216094	39481319	3558	0.1536	NEUTRAL	NA	268	Too-Many
TCGA.F5.6813	17	20218792	37745978	3156	0.0034	NEUTRAL	NA	189	Too-Many
TCGA.AD.6965	17	20218792	77781724	13675	-0.1797	NEUTRAL	NA	752	Too-Many
TCGA.AG.A00Y.01A	17	20224598	81051974	6198	0.2224	NEUTRAL	NA	829	Too-Many
TCGA.DM.A28M.01A	17	20227445	20359827	13	-0.4895	NEUTRAL	NA	1	LGALS9B
TCGA.F5.6811.01A	17	20302060	78645394	7142	0.2698	NEUTRAL	NA	764	Too-Many
TCGA.CK.4948.01B	17	20361468	21454270	50	-0.3244	NEUTRAL	NA	11	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,TMEM11,USP22"
TCGA.AZ.4684.01A	17	20361468	21826060	51	-0.4603	NEUTRAL	NA	11	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,TMEM11,USP22"
TCGA.CM.4750.01A	17	20361468	21826060	52	-0.501	NEUTRAL	NA	11	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,TMEM11,USP22"
TCGA.DM.A28M.01A	17	20361468	29496862	670	0.1602	NEUTRAL	NA	76	"ABHD15,ADAP2,ALDOC,ANKRD13B,ATAD5,BLMH,C17orf51,CCDC144NL,CDRT15L2,CORO6,CPD,CRLF3,CRYBA1,DHRS13,DHRS7B,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LGALS9B,LYRM9,MAP2K3,MTRNR2L1,MYO18A,NARR,NATD1,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM11,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,USP22,VTN,WSB1"
TCGA.AA.A02K.01A	17	20363613	21454228	46	-0.3937	NEUTRAL	NA	11	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,TMEM11,USP22"
TCGA.G4.6314	17	20384919	44162596	4471	0.2456	NEUTRAL	NA	400	Too-Many
TCGA.D5.6898	17	20384919	81048658	14315	0.0323	NEUTRAL	NA	828	Too-Many
TCGA.AA.A010.01A	17	20483048	25639198	58	0.0974	NEUTRAL	NA	12	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,MAP2K3,MTRNR2L1,NATD1,TMEM11,USP22,WSB1"
TCGA.SS.A7HO	17	20522443	55117621	7518	0.0253	NEUTRAL	NA	511	Too-Many
TCGA.D5.6924	17	20593907	81048658	14308	0.1731	NEUTRAL	NA	827	Too-Many
TCGA.AA.3556	17	20608647	21754121	155	0.0324	NEUTRAL	NA	9	"C17orf51,CCDC144NL,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.CM.5341	17	20630546	21519099	143	0.0494	NEUTRAL	NA	9	"C17orf51,CCDC144NL,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.DC.6682	17	20634858	20852832	32	0.104	NEUTRAL	NA	1	CCDC144NL
TCGA.CK.6748	17	20634858	81048658	14316	-0.0131	NEUTRAL	NA	827	Too-Many
TCGA.AG.4021	17	20640933	81048658	14315	-0.0765	NEUTRAL	NA	827	Too-Many
TCGA.DM.A28E	17	20733363	20752506	7	-0.0869	NEUTRAL	NA	0	None
TCGA.AA.3968	17	20736889	21919683	155	-0.4931	NEUTRAL	NA	9	"C17orf51,CCDC144NL,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.DM.A285	17	20741577	20972022	52	0.1209	NEUTRAL	NA	2	"CCDC144NL,USP22"
TCGA.AA.A00L.01A	17	20768684	21188156	14	-0.2268	NEUTRAL	NA	6	"CCDC144NL,DHRS7B,MAP2K3,NATD1,TMEM11,USP22"
TCGA.A6.3808.01A	17	20768684	25958210	75	-0.0772	NEUTRAL	NA	13	"C17orf51,CCDC144NL,DHRS7B,KCNJ12,KCNJ18,KSR1,LGALS9,MAP2K3,MTRNR2L1,NATD1,TMEM11,USP22,WSB1"
TCGA.AA.3678	17	20782356	81048658	14324	0.023	NEUTRAL	NA	827	Too-Many
TCGA.AA.3941	17	20801738	21709232	123	0.3308	NEUTRAL	NA	8	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.G4.6307	17	20834923	81048658	14314	0.2813	NEUTRAL	NA	826	Too-Many
TCGA.AF.2693	17	20851734	20908811	17	-0.0024	NEUTRAL	NA	1	USP22
TCGA.AA.3837	17	20880680	81048658	14311	0.0527	NEUTRAL	NA	826	Too-Many
TCGA.AF.2693	17	20910423	20911172	4	-0.5005	NEUTRAL	NA	1	USP22
TCGA.AF.2693	17	20914155	20934243	15	0.1176	NEUTRAL	NA	1	USP22
TCGA.AF.A56L	17	21005470	37305409	3028	-0.0738	NEUTRAL	NA	178	Too-Many
TCGA.A6.2680	17	21072230	81048658	14242	0.0014	NEUTRAL	NA	825	Too-Many
TCGA.AA.3872	17	21080200	21754121	76	0.3671	NEUTRAL	NA	7	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11"
TCGA.AF.3914.01A	17	21086895	34964647	1115	0.0338	NEUTRAL	NA	145	Too-Many
TCGA.AG.A00H.01A	17	21091977	34954553	1041	-0.2736	NEUTRAL	NA	144	Too-Many
TCGA.DC.6160.01A	17	21147012	35866190	1804	-0.2139	NEUTRAL	NA	149	Too-Many
TCGA.AA.A00N.01A	17	21188156	25948860	47	-0.4391	NEUTRAL	NA	7	"C17orf51,KCNJ12,KCNJ18,KSR1,MAP2K3,MTRNR2L1,WSB1"
TCGA.AA.A01Q.01A	17	21201671	21319226	13	-0.3633	NEUTRAL	NA	3	"KCNJ12,KCNJ18,MAP2K3"
TCGA.AA.A00L.01A	17	21201671	21454270	15	0.294	NEUTRAL	NA	4	"C17orf51,KCNJ12,KCNJ18,MAP2K3"
TCGA.AG.3611.01A	17	21201671	29183944	438	0.2736	NEUTRAL	NA	65	"ABHD15,ALDOC,ANKRD13B,ATAD5,BLMH,C17orf51,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LYRM9,MAP2K3,MTRNR2L1,MYO18A,NARR,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.A004.01A	17	21208300	26676072	81	0.0864	NEUTRAL	NA	15	"C17orf51,IFT20,KCNJ12,KCNJ18,KSR1,LGALS9,LYRM9,MAP2K3,MTRNR2L1,NLK,NOS2,POLDIP2,TMEM97,TNFAIP1,WSB1"
TCGA.AG.3881	17	21294732	81048658	14220	0.0974	NEUTRAL	NA	821	Too-Many
TCGA.AA.A01Q.01A	17	21319873	26092520	29	0.1461	NEUTRAL	NA	8	"C17orf51,KCNJ12,KCNJ18,KSR1,LGALS9,MTRNR2L1,NOS2,WSB1"
TCGA.AG.4009.01A	17	21319873	26684647	97	0.3406	NEUTRAL	NA	15	"C17orf51,IFT20,KCNJ12,KCNJ18,KSR1,LGALS9,LYRM9,MTRNR2L1,NLK,NOS2,POLDIP2,TMEM199,TMEM97,TNFAIP1,WSB1"
TCGA.AG.A01N.01A	17	21319873	80972276	6064	-0.0467	NEUTRAL	NA	820	Too-Many
TCGA.A6.4105	17	21369628	81048658	14214	0.3059	NEUTRAL	NA	819	Too-Many
TCGA.DM.A28H	17	21397963	58701191	8130	-0.0552	NEUTRAL	NA	546	Too-Many
TCGA.A6.3807	17	21496598	81048658	14128	0.0241	NEUTRAL	NA	818	Too-Many
TCGA.F5.6571	17	21519099	22235649	55	0.3325	NEUTRAL	NA	1	MTRNR2L1
TCGA.G5.6235	17	21519099	60742278	8442	0.1624	NEUTRAL	NA	557	Too-Many
TCGA.AZ.4616	17	21519099	67615663	10218	0	NEUTRAL	NA	618	Too-Many
TCGA.CM.6169	17	21519099	78962931	13832	0.0328	NEUTRAL	NA	753	Too-Many
TCGA.AZ.6603	17	21519099	81048658	14168	0.1062	NEUTRAL	NA	818	Too-Many
TCGA.CK.5912	17	21519099	81048658	14155	-0.3162	NEUTRAL	NA	818	Too-Many
TCGA.QG.A5Z1	17	21519099	81048658	14053	-0.0176	NEUTRAL	NA	818	Too-Many
TCGA.AA.3975	17	21527045	22235649	54	-0.0593	NEUTRAL	NA	1	MTRNR2L1
TCGA.5M.AATE	17	21527045	44162596	4319	0.217	NEUTRAL	NA	390	Too-Many
TCGA.AA.3841	17	21527045	44219554	4338	0.0897	NEUTRAL	NA	390	Too-Many
TCGA.D5.5538	17	21527045	62641159	8760	-0.0188	NEUTRAL	NA	589	Too-Many
TCGA.AG.3732	17	21527045	64684264	9335	-0.0081	NEUTRAL	NA	596	Too-Many
TCGA.A6.5667	17	21527045	80374898	14041	0.0871	NEUTRAL	NA	806	Too-Many
TCGA.A6.A567	17	21527045	81048658	14068	-0.0545	NEUTRAL	NA	818	Too-Many
TCGA.DY.A1DG	17	21527045	81048658	14197	0.3338	NEUTRAL	NA	818	Too-Many
TCGA.G4.6315	17	21527045	81048658	14203	0.0074	NEUTRAL	NA	818	Too-Many
TCGA.T9.A92H	17	21527045	81048658	14197	0.0146	NEUTRAL	NA	818	Too-Many
TCGA.DC.6682	17	21552185	32862189	1903	0.0697	NEUTRAL	NA	89	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MTRNR2L1,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.AA.3488	17	21552185	34257068	2284	0.0369	NEUTRAL	NA	116	Too-Many
TCGA.F4.6809	17	21552185	37332962	2961	-0.0363	NEUTRAL	NA	173	Too-Many
TCGA.AA.3679	17	21552185	38423478	3102	0.3639	NEUTRAL	NA	202	Too-Many
TCGA.AD.6890	17	21552185	44162596	4313	0.2346	NEUTRAL	NA	390	Too-Many
TCGA.AA.3693	17	21552185	49908913	5585	0.1009	NEUTRAL	NA	486	Too-Many
TCGA.A6.2683	17	21552185	81048658	14186	0.0695	NEUTRAL	NA	818	Too-Many
TCGA.AA.3511	17	21552185	81048658	14172	0	NEUTRAL	NA	818	Too-Many
TCGA.AG.3726	17	21552185	81048658	14196	0.0297	NEUTRAL	NA	818	Too-Many
TCGA.AZ.4308	17	21552185	81048658	14182	-0.0158	NEUTRAL	NA	818	Too-Many
TCGA.DY.A0XA	17	21552185	81048658	14179	-0.0067	NEUTRAL	NA	818	Too-Many
TCGA.G4.6303	17	21552185	81048658	14198	0.2732	NEUTRAL	NA	818	Too-Many
TCGA.EI.6884	17	21709232	81048658	14152	0.0095	NEUTRAL	NA	818	Too-Many
TCGA.AA.3941	17	21717444	25455184	64	-0.2251	NEUTRAL	NA	1	MTRNR2L1
TCGA.D5.6531	17	21717444	81048658	14189	-0.0188	NEUTRAL	NA	818	Too-Many
TCGA.DM.A285	17	21717444	81048658	14167	0.1612	NEUTRAL	NA	818	Too-Many
TCGA.AA.3496	17	21721971	22105109	36	0.0046	NEUTRAL	NA	1	MTRNR2L1
TCGA.AA.3850	17	21732692	25409525	57	0.01985	NEUTRAL	NA	1	MTRNR2L1
TCGA.F4.6805	17	21736352	81048658	14167	-0.0052	NEUTRAL	NA	818	Too-Many
TCGA.AA.3556	17	21779139	22170993	39	-0.2581	NEUTRAL	NA	1	MTRNR2L1
TCGA.AA.3872	17	21779139	37409864	2965	0.0042	NEUTRAL	NA	176	Too-Many
TCGA.AG.3902	17	21787327	35843049	2641	0.04	NEUTRAL	NA	143	Too-Many
TCGA.AA.3864	17	21793896	39211907	3304	0.1353	NEUTRAL	NA	232	Too-Many
TCGA.CK.4948.01B	17	21825440	29550441	630	0.1879	NEUTRAL	NA	65	"ABHD15,ADAP2,ALDOC,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MTRNR2L1,MYO18A,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.A02K.01A	17	21825441	25958211	30	0.1646	NEUTRAL	NA	4	"KSR1,LGALS9,MTRNR2L1,WSB1"
TCGA.AA.3967.01A	17	21826060	26904653	157	0.0884	NEUTRAL	NA	22	"ALDOC,FOXN1,IFT20,KSR1,LGALS9,LYRM9,MTRNR2L1,NLK,NOS2,PIGS,POLDIP2,SARM1,SEBOX,SLC13A2,SLC46A1,SPAG5,TMEM199,TMEM97,TNFAIP1,UNC119,VTN,WSB1"
TCGA.AH.6549.01A	17	21826060	37783585	1542	0.2833	NEUTRAL	NA	180	Too-Many
TCGA.A6.6138	17	21835271	22171189	35	0.3682	NEUTRAL	NA	1	MTRNR2L1
TCGA.AD.6548	17	21858122	81048658	14133	-0.007	NEUTRAL	NA	818	Too-Many
TCGA.AA.A01Z	17	21909837	26613675	259	0.0178	NEUTRAL	NA	7	"KSR1,LGALS9,LYRM9,MTRNR2L1,NLK,NOS2,WSB1"
TCGA.CA.5254	17	21940583	34211428	2243	0.2872	NEUTRAL	NA	115	Too-Many
TCGA.F4.6807	17	21940583	81048658	14126	0.0091	NEUTRAL	NA	818	Too-Many
TCGA.AA.3979	17	21963241	26164493	199	0.0512	NEUTRAL	NA	5	"KSR1,LGALS9,MTRNR2L1,NOS2,WSB1"
TCGA.AA.3955	17	21963241	81048658	14162	0.0206	NEUTRAL	NA	818	Too-Many
TCGA.G4.6320	17	21984360	81048658	14167	0.0855	NEUTRAL	NA	818	Too-Many
TCGA.AG.A026	17	21991613	27917770	423	-0.0526	NEUTRAL	NA	48	"ABHD15,ALDOC,CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MTRNR2L1,MYO18A,NARR,NEK8,NLK,NOS2,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.3660	17	22019966	81048658	14158	-0.0064	NEUTRAL	NA	818	Too-Many
TCGA.AA.3655	17	22027010	51157760	5968	0.0045	NEUTRAL	NA	486	Too-Many
TCGA.QG.A5YV	17	22030410	81048658	14025	-0.3978	NEUTRAL	NA	817	Too-Many
TCGA.AG.3727	17	22049306	39874074	3502	0.0347	NEUTRAL	NA	273	Too-Many
TCGA.D5.6922	17	22105109	27812224	400	0.2689	NEUTRAL	NA	44	"ALDOC,CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.AZ.6608	17	22105109	81048658	14110	0.0094	NEUTRAL	NA	817	Too-Many
TCGA.G4.6297	17	22105109	81048658	14157	0.0958	NEUTRAL	NA	817	Too-Many
TCGA.DM.A288	17	22108782	25557995	43	-0.0003	NEUTRAL	NA	0	None
TCGA.AD.6963	17	22108782	81048658	14141	0.1725	NEUTRAL	NA	817	Too-Many
TCGA.AA.A03J	17	22120731	66419254	9576	0.0231	NEUTRAL	NA	610	Too-Many
TCGA.CM.6675	17	22121728	45909182	4531	0.2935	NEUTRAL	NA	409	Too-Many
TCGA.AA.3673	17	22168794	26337891	219	0.0609	NEUTRAL	NA	5	"KSR1,LGALS9,LYRM9,NOS2,WSB1"
TCGA.CM.5868	17	22168794	81048658	14115	0.1517	NEUTRAL	NA	817	Too-Many
TCGA.D5.6533	17	22168794	81048658	14113	0.1895	NEUTRAL	NA	817	Too-Many
TCGA.A6.5665	17	22170993	70485721	11295	-0.0637	NEUTRAL	NA	620	Too-Many
TCGA.AA.3544	17	22170993	81048658	14152	0.0398	NEUTRAL	NA	817	Too-Many
TCGA.AA.3548	17	22170993	81048658	14153	0.0173	NEUTRAL	NA	817	Too-Many
TCGA.AA.3681	17	22170993	81048658	14154	0.0438	NEUTRAL	NA	817	Too-Many
TCGA.AF.2690	17	22170993	81048658	14149	0.224	NEUTRAL	NA	817	Too-Many
TCGA.AF.2691	17	22170993	81048658	14146	-5.00E-04	NEUTRAL	NA	817	Too-Many
TCGA.AG.3602	17	22170993	81048658	14066	0.0543	NEUTRAL	NA	817	Too-Many
TCGA.AA.3556	17	22171189	34447401	2317	-0.0076	NEUTRAL	NA	123	Too-Many
TCGA.AA.3532	17	22171189	44153521	4265	0.1685	NEUTRAL	NA	389	Too-Many
TCGA.A6.6138	17	22217679	32240831	1487	0.0177	NEUTRAL	NA	82	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.AA.3956	17	22217882	25544887	27	0.0592	NEUTRAL	NA	0	None
TCGA.AG.3898	17	22217882	36624909	2765	0.0609	NEUTRAL	NA	157	Too-Many
TCGA.DM.A1D0	17	22235649	25343370	3	-0.0258	NEUTRAL	NA	0	None
TCGA.AA.3968	17	22235649	32383815	1562	-0.3629	NEUTRAL	NA	82	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.AF.A56N	17	22235649	34436707	2309	0.0988	NEUTRAL	NA	123	Too-Many
TCGA.AG.3725	17	22235649	38699807	3077	-0.0313	NEUTRAL	NA	207	Too-Many
TCGA.CM.6167	17	22235649	81048658	14140	0.1721	NEUTRAL	NA	817	Too-Many
TCGA.AG.A01W.01A	17	23824807	23899691	21	0.0411	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	23905319	23921968	10	-0.3904	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	23922525	23925595	4	0.2296	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	23942846	24309064	143	0.0033	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	24310141	24460961	38	-0.3642	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	24461554	24929799	56	0.0789	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	24981964	25046538	12	-0.3445	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	25054057	25434000	21	0.1612	NEUTRAL	NA	0	None
TCGA.5M.AAT4	17	25313689	25585819	39	0.1022	NEUTRAL	NA	0	None
TCGA.AG.3581	17	25313689	33100175	1970	0.3567	NEUTRAL	NA	90	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf102,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM132E,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.AG.3890	17	25313689	44153521	4246	0	NEUTRAL	NA	389	Too-Many
TCGA.AG.4008	17	25313689	81048658	14043	0.0845	NEUTRAL	NA	817	Too-Many
TCGA.D5.6535	17	25313689	81048658	14141	0.2666	NEUTRAL	NA	817	Too-Many
TCGA.F5.6571	17	25313689	81048658	14125	-0.0434	NEUTRAL	NA	817	Too-Many
TCGA.AM.5820	17	25343370	25541277	23	0.2673	NEUTRAL	NA	0	None
TCGA.AF.2689	17	25343370	27238074	293	0.121	NEUTRAL	NA	37	"ALDOC,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,NARR,NEK8,NLK,NOS2,PHF12,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.3517	17	25343370	27341433	306	0.0246	NEUTRAL	NA	38	"ALDOC,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,NARR,NEK8,NLK,NOS2,PHF12,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.3875	17	25343370	27760142	384	0.3749	NEUTRAL	NA	44	"ALDOC,CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.EI.6513	17	25343370	29016359	515	-0.0017	NEUTRAL	NA	58	"ABHD15,ALDOC,ANKRD13B,BLMH,CORO6,CPD,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.3866	17	25343370	31072992	861	0.1975	NEUTRAL	NA	79	"ABHD15,ADAP2,ALDOC,ANKRD13B,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.AA.3549	17	25343370	32378512	1558	-0.0353	NEUTRAL	NA	82	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.CM.5341	17	25343370	32418218	1565	0.0791	NEUTRAL	NA	82	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.CI.6622	17	25343370	34447401	2309	-0.0007	NEUTRAL	NA	123	Too-Many
TCGA.AG.3594	17	25343370	35675012	2581	0.0301	NEUTRAL	NA	140	Too-Many
TCGA.AG.3883	17	25343370	36234105	2739	0.0597	NEUTRAL	NA	146	Too-Many
TCGA.AG.3742	17	25343370	36813345	2785	-0.0608	NEUTRAL	NA	158	Too-Many
TCGA.AA.3867	17	25343370	39713917	3463	0.2794	NEUTRAL	NA	267	Too-Many
TCGA.AA.3952	17	25343370	39896061	3489	0.0398	NEUTRAL	NA	274	Too-Many
TCGA.EI.6514	17	25343370	43935630	4183	0.2342	NEUTRAL	NA	386	Too-Many
TCGA.AA.3848	17	25343370	44153521	4263	0.0626	NEUTRAL	NA	389	Too-Many
TCGA.D5.6538	17	25343370	44162283	4264	0.3106	NEUTRAL	NA	389	Too-Many
TCGA.EI.7004	17	25343370	44162596	4258	0.0102	NEUTRAL	NA	389	Too-Many
TCGA.F5.6464	17	25343370	45017858	4381	-0.0689	NEUTRAL	NA	397	Too-Many
TCGA.G4.6626	17	25343370	48305967	5065	0.1589	NEUTRAL	NA	461	Too-Many
TCGA.AA.3667	17	25343370	49689591	5411	0.0498	NEUTRAL	NA	484	Too-Many
TCGA.EI.6508	17	25343370	50127171	5608	0.0189	NEUTRAL	NA	485	Too-Many
TCGA.4N.A93T	17	25343370	52948506	6415	-0.0617	NEUTRAL	NA	487	Too-Many
TCGA.QG.A5YW	17	25343370	57187728	7811	0.2333	NEUTRAL	NA	527	Too-Many
TCGA.D5.5540	17	25343370	58113569	8001	0.0188	NEUTRAL	NA	538	Too-Many
TCGA.CM.6170	17	25343370	59795211	8284	0.019	NEUTRAL	NA	550	Too-Many
TCGA.NH.A6GA	17	25343370	68148810	10328	-0.0283	NEUTRAL	NA	618	Too-Many
TCGA.AG.3893	17	25343370	77243062	13216	0.0394	NEUTRAL	NA	737	Too-Many
TCGA.A6.2675	17	25343370	80117334	13882	0.1395	NEUTRAL	NA	798	Too-Many
TCGA.DM.A28E	17	25343370	81006628	14097	0.0142	NEUTRAL	NA	816	Too-Many
TCGA.AG.3584	17	25343370	81012184	14136	-0.0047	NEUTRAL	NA	816	Too-Many
TCGA.5M.AAT5	17	25343370	81048658	14132	0.0487	NEUTRAL	NA	817	Too-Many
TCGA.5M.AATA	17	25343370	81048658	14113	0.0386	NEUTRAL	NA	817	Too-Many
TCGA.A6.6137	17	25343370	81048658	14146	0.2275	NEUTRAL	NA	817	Too-Many
TCGA.AA.3494	17	25343370	81048658	14131	0.2906	NEUTRAL	NA	817	Too-Many
TCGA.AA.3495	17	25343370	81048658	14129	0.3463	NEUTRAL	NA	817	Too-Many
TCGA.AA.3519	17	25343370	81048658	14142	0.0232	NEUTRAL	NA	817	Too-Many
TCGA.AA.3692	17	25343370	81048658	14146	0.1363	NEUTRAL	NA	817	Too-Many
TCGA.AA.3851	17	25343370	81048658	14133	0.0579	NEUTRAL	NA	817	Too-Many
TCGA.AA.3858	17	25343370	81048658	14148	-0.0349	NEUTRAL	NA	817	Too-Many
TCGA.AA.3971	17	25343370	81048658	14127	0.0315	NEUTRAL	NA	817	Too-Many
TCGA.AD.A5EK	17	25343370	81048658	14022	0.2999	NEUTRAL	NA	817	Too-Many
TCGA.AF.3911	17	25343370	81048658	14143	-0.027	NEUTRAL	NA	817	Too-Many
TCGA.AG.3591	17	25343370	81048658	14144	-0.2321	NEUTRAL	NA	817	Too-Many
TCGA.AY.5543	17	25343370	81048658	14037	-0.0207	NEUTRAL	NA	817	Too-Many
TCGA.AZ.4614	17	25343370	81048658	13971	0.0024	NEUTRAL	NA	817	Too-Many
TCGA.AZ.4681	17	25343370	81048658	14134	0.0356	NEUTRAL	NA	817	Too-Many
TCGA.CA.5256	17	25343370	81048658	14008	0.0183	NEUTRAL	NA	817	Too-Many
TCGA.CL.4957	17	25343370	81048658	14148	0.0026	NEUTRAL	NA	817	Too-Many
TCGA.CM.4752	17	25343370	81048658	14128	0.1793	NEUTRAL	NA	817	Too-Many
TCGA.CM.6679	17	25343370	81048658	14093	-0.02475	NEUTRAL	NA	817	Too-Many
TCGA.DC.4749	17	25343370	81048658	14143	-0.0394	NEUTRAL	NA	817	Too-Many
TCGA.DC.6683	17	25343370	81048658	14115	0.2495	NEUTRAL	NA	817	Too-Many
TCGA.DM.A1D4	17	25343370	81048658	14140	-0.014	NEUTRAL	NA	817	Too-Many
TCGA.DM.A1D7	17	25343370	81048658	14143	-0.0459	NEUTRAL	NA	817	Too-Many
TCGA.DM.A28A	17	25343370	81048658	14119	0.0023	NEUTRAL	NA	817	Too-Many
TCGA.DY.A1DC	17	25343370	81048658	14122	-0.0245	NEUTRAL	NA	817	Too-Many
TCGA.EI.6510	17	25343370	81048658	14131	0.1153	NEUTRAL	NA	817	Too-Many
TCGA.EI.6883	17	25343370	81048658	14104	0.0079	NEUTRAL	NA	817	Too-Many
TCGA.EI.7002	17	25343370	81048658	14112	0.3074	NEUTRAL	NA	817	Too-Many
TCGA.F5.6465	17	25343370	81048658	14144	-0.0475	NEUTRAL	NA	817	Too-Many
TCGA.F5.6864	17	25343370	81048658	14117	0.0894	NEUTRAL	NA	817	Too-Many
TCGA.G4.6306	17	25343370	81048658	14135	-0.0532	NEUTRAL	NA	817	Too-Many
TCGA.G4.6310	17	25343370	81048658	14134	0.2428	NEUTRAL	NA	817	Too-Many
TCGA.G4.6311	17	25343370	81048658	14142	0.2355	NEUTRAL	NA	817	Too-Many
TCGA.AA.3695	17	25346691	29985077	650	0.3263	NEUTRAL	NA	68	"ABHD15,ADAP2,ALDOC,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB11FIP4,RAB34,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.DC.6158	17	25346691	31836992	1246	0.3158	NEUTRAL	NA	82	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.DM.A0XD	17	25346691	32180190	1452	0.0009	NEUTRAL	NA	82	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.DT.5265	17	25346691	42848093	3947	0.1596	NEUTRAL	NA	365	Too-Many
TCGA.AU.3779	17	25346691	70871825	11494	0.1699	NEUTRAL	NA	621	Too-Many
TCGA.D5.6932	17	25346691	71156993	11595	-0.2607	NEUTRAL	NA	621	Too-Many
TCGA.AG.3885	17	25346691	81048658	14138	0.0128	NEUTRAL	NA	817	Too-Many
TCGA.CI.6621	17	25346691	81048658	14124	0.1579	NEUTRAL	NA	817	Too-Many
TCGA.CM.6164	17	25346691	81048658	14119	0.0195	NEUTRAL	NA	817	Too-Many
TCGA.D5.6541	17	25346691	81048658	14142	-0.0275	NEUTRAL	NA	817	Too-Many
TCGA.A6.6140	17	25363653	44162596	4266	0.0022	NEUTRAL	NA	389	Too-Many
TCGA.A6.6648	17	25363653	61945448	8563	0.2155	NEUTRAL	NA	571	Too-Many
TCGA.CM.6172	17	25363653	79253577	13888	-0.0275	NEUTRAL	NA	759	Too-Many
TCGA.G4.6625	17	25363653	81048658	14140	0.0845	NEUTRAL	NA	817	Too-Many
TCGA.CM.5344	17	25388275	81048658	14134	0.2491	NEUTRAL	NA	817	Too-Many
TCGA.D5.6926	17	25388275	81048658	14112	0.0049	NEUTRAL	NA	817	Too-Many
TCGA.AY.A8YK	17	25396145	25483737	16	0.3564	NEUTRAL	NA	0	None
TCGA.DM.A1DB	17	25398036	69598216	10944	0.0213	NEUTRAL	NA	619	Too-Many
TCGA.AH.6544	17	25398036	81048658	14112	0.0169	NEUTRAL	NA	817	Too-Many
TCGA.CL.5918	17	25398527	81048658	14099	0.0003	NEUTRAL	NA	817	Too-Many
TCGA.AF.6655	17	25402268	81048658	14105	-0.0397	NEUTRAL	NA	817	Too-Many
TCGA.AH.6643	17	25404048	34449419	2302	0.1282	NEUTRAL	NA	123	Too-Many
TCGA.A6.6650	17	25404048	81048658	13117	0.0251	NEUTRAL	NA	817	Too-Many
TCGA.CI.6619	17	25404048	81048658	14117	0.1282	NEUTRAL	NA	817	Too-Many
TCGA.CI.6620	17	25404048	81048658	14103	0.0305	NEUTRAL	NA	817	Too-Many
TCGA.D5.5539	17	25409525	44162596	4248	0.2179	NEUTRAL	NA	389	Too-Many
TCGA.A6.A56B	17	25409525	81048658	14014	-0.0011	NEUTRAL	NA	817	Too-Many
TCGA.AG.A01W.01A	17	25438162	25532001	11	-0.3427	NEUTRAL	NA	0	None
TCGA.AA.3712	17	25468599	81048658	14129	0.0195	NEUTRAL	NA	817	Too-Many
TCGA.AA.3941	17	25472213	31526330	1035	0.3471	NEUTRAL	NA	82	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.AA.3850	17	25481291	29671326	558	0.34235	NEUTRAL	NA	67	"ABHD15,ADAP2,ALDOC,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.AF.A56K	17	25487138	70384041	11220	0.2257	NEUTRAL	NA	620	Too-Many
TCGA.AG.A01W.01A	17	25535743	25914296	63	0.071	NEUTRAL	NA	2	"KSR1,WSB1"
TCGA.AM.5820	17	25541571	25600073	25	-0.2378	NEUTRAL	NA	0	None
TCGA.AF.2693	17	25551681	75866928	12958	-0.0283	NEUTRAL	NA	716	Too-Many
TCGA.DM.A288	17	25572046	25644068	20	-0.009	NEUTRAL	NA	1	WSB1
TCGA.5M.AAT4	17	25591469	81048658	14083	0.1339	NEUTRAL	NA	817	Too-Many
TCGA.AM.5820	17	25607691	25888701	59	0.205	NEUTRAL	NA	2	"KSR1,WSB1"
TCGA.AA.3688	17	25607691	33179961	1948	0.0435	NEUTRAL	NA	90	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf102,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM132E,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.AG.A00C.01A	17	25621341	25969215	29	0.1473	NEUTRAL	NA	3	"KSR1,LGALS9,WSB1"
TCGA.AG.3891.01A	17	25621341	26904653	154	0.1713	NEUTRAL	NA	21	"ALDOC,FOXN1,IFT20,KSR1,LGALS9,LYRM9,NLK,NOS2,PIGS,POLDIP2,SARM1,SEBOX,SLC13A2,SLC46A1,SPAG5,TMEM199,TMEM97,TNFAIP1,UNC119,VTN,WSB1"
TCGA.AA.A02E.01A	17	25621341	27284913	291	-0.2609	NEUTRAL	NA	38	"ALDOC,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,NARR,NEK8,NLK,NOS2,PHF12,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.3930.01A	17	25621341	27869532	410	0.1952	NEUTRAL	NA	44	"ALDOC,CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.3509.01A	17	25621341	28659013	528	-0.0617	NEUTRAL	NA	55	"ABHD15,ALDOC,ANKRD13B,BLMH,CORO6,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.AZ.4684.01A	17	25621341	28711970	530	-0.1249	NEUTRAL	NA	56	"ABHD15,ALDOC,ANKRD13B,BLMH,CORO6,CPD,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.AG.A023.01A	17	25621341	42452922	2406	0.0954	NEUTRAL	NA	359	Too-Many
TCGA.AA.3980.01A	17	25621341	80972276	6980	0.1204	NEUTRAL	NA	816	Too-Many
TCGA.AG.A014.01A	17	25621341	81042842	5987	0.2957	NEUTRAL	NA	817	Too-Many
TCGA.AG.A011.01A	17	25621341	81051974	5970	0.0914	NEUTRAL	NA	817	Too-Many
TCGA.CM.4750.01A	17	25621341	81051974	7120	0.1565	NEUTRAL	NA	817	Too-Many
TCGA.AA.A01K.01A	17	25628786	27067793	244	-0.0614	NEUTRAL	NA	31	"ALDOC,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,NARR,NEK8,NLK,NOS2,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,UNC119,VTN,WSB1"
TCGA.CK.5914.01A	17	25637037	25948860	21	0.2063	NEUTRAL	NA	2	"KSR1,WSB1"
TCGA.AG.A016.01A	17	25909675	25970512	20	-0.0412	NEUTRAL	NA	2	"KSR1,LGALS9"
TCGA.AA.A00N.01A	17	25958210	25967906	4	0.0538	NEUTRAL	NA	1	LGALS9
TCGA.AA.A00D.01A	17	25958210	26603853	37	0.2797	NEUTRAL	NA	4	"LGALS9,LYRM9,NLK,NOS2"
TCGA.AA.A02K.01A	17	25965236	26092542	20	-0.2165	NEUTRAL	NA	2	"LGALS9,NOS2"
TCGA.AG.A00C.01A	17	25970512	26099285	17	-0.263	NEUTRAL	NA	2	"LGALS9,NOS2"
TCGA.AG.A016.01A	17	25972258	26885447	109	0.3625	NEUTRAL	NA	17	"FOXN1,IFT20,LGALS9,LYRM9,NLK,NOS2,PIGS,POLDIP2,SARM1,SEBOX,SLC13A2,SLC46A1,TMEM199,TMEM97,TNFAIP1,UNC119,VTN"
TCGA.AA.A02J.01A	17	25973502	81006295	5409	-0.0807	NEUTRAL	NA	814	Too-Many
TCGA.AG.3731	17	26017244	26412823	89	0.0447	NEUTRAL	NA	3	"LYRM9,NLK,NOS2"
TCGA.AY.A8YK	17	26074990	26103033	16	0.3605	NEUTRAL	NA	1	NOS2
TCGA.AA.A02W.01A	17	26087004	81042842	5826	0.1089	NEUTRAL	NA	814	Too-Many
TCGA.AA.3994	17	26089373	32147901	1291	0.0599	NEUTRAL	NA	79	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,ZNF207"
TCGA.AA.A00N.01A	17	26093486	26107746	10	0.2358	NEUTRAL	NA	1	NOS2
TCGA.AA.A01Q.01A	17	26093486	26125677	16	-0.5069	NEUTRAL	NA	1	NOS2
TCGA.CK.5914.01A	17	26093486	26369860	21	-0.0187	NEUTRAL	NA	3	"LYRM9,NLK,NOS2"
TCGA.AA.A02K.01A	17	26093487	26800680	78	0.1962	NEUTRAL	NA	13	"IFT20,LYRM9,NLK,NOS2,POLDIP2,SARM1,SEBOX,SLC13A2,SLC46A1,TMEM199,TMEM97,TNFAIP1,VTN"
TCGA.AG.3909.01A	17	26096489	26107746	7	-0.077	NEUTRAL	NA	1	NOS2
TCGA.AG.A00C.01A	17	26100138	26107746	4	0.1222	NEUTRAL	NA	1	NOS2
TCGA.AY.A8YK	17	26104510	28936802	358	-0.0322	NEUTRAL	NA	55	"ABHD15,ALDOC,ANKRD13B,BLMH,CORO6,CPD,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN"
TCGA.AA.A00O.01A	17	26105669	36943028	1177	-0.102	NEUTRAL	NA	161	Too-Many
TCGA.AA.A00N.01A	17	26109000	26369860	11	-0.4066	NEUTRAL	NA	3	"LYRM9,NLK,NOS2"
TCGA.AM.5820	17	26116847	56700671	7679	0.0708	NEUTRAL	NA	520	Too-Many
TCGA.AA.A010.01A	17	26125677	26671372	31	0.0213	NEUTRAL	NA	6	"IFT20,LYRM9,NLK,NOS2,TMEM97,TNFAIP1"
TCGA.AG.A01W.01A	17	26135280	26533613	54	-0.235	NEUTRAL	NA	2	"LYRM9,NLK"
TCGA.AG.A00C.01A	17	26209543	26603853	14	-0.1883	NEUTRAL	NA	2	"LYRM9,NLK"
TCGA.AA.3673	17	26349997	54163635	6728	-0.3323	NEUTRAL	NA	489	Too-Many
TCGA.AA.3979	17	26349997	78910060	13588	0.0445	NEUTRAL	NA	747	Too-Many
TCGA.AA.A01Q.01A	17	26369860	26603853	12	0.293	NEUTRAL	NA	1	NLK
TCGA.A6.3808.01A	17	26369860	26678638	31	-0.257	NEUTRAL	NA	5	"IFT20,NLK,POLDIP2,TMEM97,TNFAIP1"
TCGA.AG.3731	17	26462137	27077330	60	-0.3728	NEUTRAL	NA	27	"ALDOC,FOXN1,IFT20,KIAA0100,NARR,NEK8,NLK,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN"
TCGA.DM.A288	17	26462137	31610551	875	0.011	NEUTRAL	NA	77	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,LRRC37B,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,ZNF207"
TCGA.AG.A01W.01A	17	26551520	27207894	73	0.1718	NEUTRAL	NA	29	"ALDOC,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,NARR,NEK8,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN"
TCGA.AA.A01Q.01A	17	26653522	27248658	209	-0.3506	NEUTRAL	NA	31	"ALDOC,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,NARR,NEK8,PHF12,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN"
TCGA.AA.A004.01A	17	26680670	26901477	49	0.2475	NEUTRAL	NA	11	"ALDOC,FOXN1,PIGS,POLDIP2,SARM1,SEBOX,SLC13A2,SLC46A1,TMEM199,UNC119,VTN"
TCGA.AA.A00D.01A	17	26695540	26854219	23	0.0895	NEUTRAL	NA	5	"FOXN1,SARM1,SLC13A2,SLC46A1,VTN"
TCGA.AA.A010.01A	17	26699006	26906715	52	0.0463	NEUTRAL	NA	8	"ALDOC,FOXN1,PIGS,SARM1,SLC13A2,SLC46A1,SPAG5,UNC119"
TCGA.A6.3808.01A	17	26699006	27794152	284	-0.1776	NEUTRAL	NA	31	"ALDOC,CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,KIAA0100,MYO18A,NARR,NEK8,NUFIP2,PHF12,PIGS,PIPOX,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TAOK1,TIAF1,TLCD1,TRAF4,UNC119"
TCGA.AA.A01F.01A	17	26708244	26715176	4	-0.0461	NEUTRAL	NA	1	SARM1
TCGA.AG.4009.01A	17	26711385	26729209	7	5.00E-04	NEUTRAL	NA	2	"SARM1,SLC46A1"
TCGA.AG.A00C.01A	17	26727584	26856060	18	-0.0122	NEUTRAL	NA	4	"FOXN1,SARM1,SLC13A2,SLC46A1"
TCGA.AA.A00N.01A	17	26800679	26851474	13	0.3048	NEUTRAL	NA	2	"FOXN1,SLC13A2"
TCGA.AA.A02K.01A	17	26816186	26861313	15	-0.1908	NEUTRAL	NA	2	"FOXN1,SLC13A2"
TCGA.CK.5914.01A	17	26851474	26938534	41	-0.4751	NEUTRAL	NA	6	"ALDOC,FOXN1,PIGS,SGK494,SPAG5,UNC119"
TCGA.AA.A00N.01A	17	26854219	26874601	8	-0.3675	NEUTRAL	NA	2	"FOXN1,UNC119"
TCGA.AG.A00C.01A	17	26861683	27074180	132	0.365	NEUTRAL	NA	16	"ALDOC,FOXN1,KIAA0100,NARR,NEK8,PIGS,PROCA1,RAB34,RPL23A,SDF2,SGK494,SPAG5,SUPT6H,TLCD1,TRAF4,UNC119"
TCGA.AA.A02K.01A	17	26861704	27004692	78	0.2101	NEUTRAL	NA	9	"ALDOC,FOXN1,KIAA0100,PIGS,SDF2,SGK494,SPAG5,SUPT6H,UNC119"
TCGA.AG.4009.01A	17	26874268	26887015	9	-0.358	NEUTRAL	NA	2	"PIGS,UNC119"
TCGA.AG.A016.01A	17	26887015	26904979	9	0.0936	NEUTRAL	NA	3	"ALDOC,PIGS,SPAG5"
TCGA.AG.4009.01A	17	26888422	26913389	17	0.2055	NEUTRAL	NA	3	"ALDOC,PIGS,SPAG5"
TCGA.AG.A016.01A	17	26905643	26913389	9	-0.3645	NEUTRAL	NA	1	SPAG5
TCGA.AA.A004.01A	17	26913389	27008226	57	0.0866	NEUTRAL	NA	5	"KIAA0100,SDF2,SGK494,SPAG5,SUPT6H"
TCGA.AG.A016.01A	17	26918704	26948379	23	0.1432	NEUTRAL	NA	3	"KIAA0100,SGK494,SPAG5"
TCGA.AG.4009.01A	17	26918704	26960536	30	-0.4352	NEUTRAL	NA	3	"KIAA0100,SGK494,SPAG5"
TCGA.AG.3909.01A	17	26939232	26961873	26	-0.1569	NEUTRAL	NA	2	"KIAA0100,SGK494"
TCGA.CK.5914.01A	17	26939232	26963932	27	0.1877	NEUTRAL	NA	2	"KIAA0100,SGK494"
TCGA.AG.A016.01A	17	26950727	26960536	7	-0.2154	NEUTRAL	NA	1	KIAA0100
TCGA.AG.A016.01A	17	26961487	37814619	1189	0.3186	NEUTRAL	NA	158	Too-Many
TCGA.AA.A010.01A	17	26970553	27017932	28	-0.1451	NEUTRAL	NA	3	"KIAA0100,SDF2,SUPT6H"
TCGA.AG.4009.01A	17	26982255	27031689	36	0.3345	NEUTRAL	NA	3	"PROCA1,SDF2,SUPT6H"
TCGA.AA.A00N.01A	17	26988707	27045093	43	-0.4178	NEUTRAL	NA	5	"NARR,PROCA1,RAB34,SDF2,SUPT6H"
TCGA.AG.3909.01A	17	27000402	27045093	39	0.2043	NEUTRAL	NA	4	"NARR,PROCA1,RAB34,SUPT6H"
TCGA.AA.A02K.01A	17	27005048	27031675	29	-0.1749	NEUTRAL	NA	2	"PROCA1,SUPT6H"
TCGA.CK.5914.01A	17	27023825	27045093	18	0.1543	NEUTRAL	NA	4	"NARR,PROCA1,RAB34,SUPT6H"
TCGA.AA.A004.01A	17	27030589	27052272	13	-0.3399	NEUTRAL	NA	5	"NARR,PROCA1,RAB34,RPL23A,TLCD1"
TCGA.AG.4009.01A	17	27038535	27049692	8	-0.3853	NEUTRAL	NA	4	"NARR,PROCA1,RAB34,RPL23A"
TCGA.AA.A02K.01A	17	27038567	27440974	111	0.1017	NEUTRAL	NA	16	"DHRS13,ERAL1,FAM222B,FLOT2,MYO18A,NARR,NEK8,PHF12,PIPOX,PROCA1,RAB34,RPL23A,SEZ6,TIAF1,TLCD1,TRAF4"
TCGA.A6.3810.01A	17	27045093	27051561	8	-0.4426	NEUTRAL	NA	3	"RAB34,RPL23A,TLCD1"
TCGA.A6.3810.01A	17	27052272	42254011	2408	0.0087	NEUTRAL	NA	321	Too-Many
TCGA.AA.3967.01A	17	27060991	80861221	6290	0.1633	NEUTRAL	NA	785	Too-Many
TCGA.AA.A004.01A	17	27064287	33288225	535	-0.1102	NEUTRAL	NA	61	"ABHD15,ADAP2,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf102,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,GIT1,GOSR1,LRRC37B,MYO18A,MYO1D,NEK8,NF1,NSRP1,NUFIP2,OMG,PHF12,PIPOX,PSMD11,RAB11FIP4,RHBDL3,RHOT1,RNF135,SEZ6,SLC6A4,SPACA3,SSH2,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TMEM132E,TMEM98,TMIGD1,TP53I13,TRAF4,UTP6,ZNF207"
TCGA.DY.A1DD	17	27065210	81048658	13870	-0.0024	NEUTRAL	NA	787	Too-Many
TCGA.CK.5914.01A	17	27068895	27308339	54	0.1068	NEUTRAL	NA	8	"DHRS13,ERAL1,FAM222B,FLOT2,NEK8,PHF12,SEZ6,TRAF4"
TCGA.AG.A00C.01A	17	27074803	29159302	262	0.0366	NEUTRAL	NA	29	"ABHD15,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,GIT1,GOSR1,MYO18A,NSRP1,NUFIP2,PHF12,PIPOX,SEZ6,SLC6A4,SSH2,TAOK1,TBC1D29,TIAF1,TMIGD1,TP53I13,TRAF4"
TCGA.AA.A01K.01A	17	27074803	58260489	3511	-0.1246	NEUTRAL	NA	510	Too-Many
TCGA.AG.3731	17	27082709	52097242	5923	0.0037	NEUTRAL	NA	455	Too-Many
TCGA.AA.A00N.01A	17	27085236	27211190	15	0.0362	NEUTRAL	NA	3	"ERAL1,FAM222B,FLOT2"
TCGA.CM.4746	17	27114599	55319533	7113	-0.0271	NEUTRAL	NA	470	Too-Many
TCGA.AA.A01Z	17	27132741	27962392	121	0.0655	NEUTRAL	NA	18	"ABHD15,ANKRD13B,CORO6,CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,GIT1,MYO18A,NUFIP2,PHF12,PIPOX,SEZ6,SSH2,TAOK1,TIAF1,TP53I13"
TCGA.AA.A010.01A	17	27182002	27208172	9	0.3053	NEUTRAL	NA	2	"ERAL1,FLOT2"
TCGA.AG.3891.01A	17	27207497	29850859	360	0.1749	NEUTRAL	NA	34	"ABHD15,ADAP2,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,EVI2A,EVI2B,FLOT2,GIT1,GOSR1,MYO18A,NF1,NSRP1,NUFIP2,OMG,PHF12,PIPOX,RAB11FIP4,RNF135,SEZ6,SLC6A4,SSH2,TAOK1,TBC1D29,TEFM,TIAF1,TMIGD1,TP53I13"
TCGA.AA.A010.01A	17	27208802	27253954	23	-0.4671	NEUTRAL	NA	3	"DHRS13,FLOT2,PHF12"
TCGA.AG.4009.01A	17	27210076	27239457	13	-0.4215	NEUTRAL	NA	3	"DHRS13,FLOT2,PHF12"
TCGA.AG.3909.01A	17	27210076	27308339	33	-0.3238	NEUTRAL	NA	4	"DHRS13,FLOT2,PHF12,SEZ6"
TCGA.AG.A01W.01A	17	27214453	27344976	29	-0.4502	NEUTRAL	NA	4	"DHRS13,FLOT2,PHF12,SEZ6"
TCGA.AG.4009.01A	17	27240866	27426625	46	0.2344	NEUTRAL	NA	5	"MYO18A,PHF12,PIPOX,SEZ6,TIAF1"
TCGA.AA.A01Q.01A	17	27250905	27898620	70	0.1965	NEUTRAL	NA	10	"ABHD15,CRYBA1,MYO18A,NUFIP2,PHF12,PIPOX,SEZ6,TAOK1,TIAF1,TP53I13"
TCGA.AA.A010.01A	17	27277051	27594433	69	0.2211	NEUTRAL	NA	7	"CRYBA1,MYO18A,NUFIP2,PHF12,PIPOX,SEZ6,TIAF1"
TCGA.AA.A00N.01A	17	27283680	27837855	82	-0.0815	NEUTRAL	NA	7	"CRYBA1,MYO18A,NUFIP2,PIPOX,SEZ6,TAOK1,TIAF1"
TCGA.AG.A01W.01A	17	27345675	27373523	7	0.0548	NEUTRAL	NA	1	PIPOX
TCGA.AG.3909.01A	17	27400842	27957822	92	-0.1284	NEUTRAL	NA	11	"ABHD15,ANKRD13B,CORO6,CRYBA1,GIT1,MYO18A,NUFIP2,SSH2,TAOK1,TIAF1,TP53I13"
TCGA.CK.5914.01A	17	27400842	29509486	270	-0.1407	NEUTRAL	NA	25	"ABHD15,ADAP2,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,CRYBA1,EFCAB5,GIT1,GOSR1,MYO18A,NF1,NSRP1,NUFIP2,RNF135,SLC6A4,SSH2,TAOK1,TBC1D29,TEFM,TIAF1,TMIGD1,TP53I13"
TCGA.AA.A02K.01A	17	27441879	27449131	11	-0.3485	NEUTRAL	NA	1	MYO18A
TCGA.AG.A01W.01A	17	27482241	27825837	57	-0.0348	NEUTRAL	NA	4	"CRYBA1,MYO18A,NUFIP2,TAOK1"
TCGA.AA.A02K.01A	17	27492914	27905673	42	0.2348	NEUTRAL	NA	7	"ABHD15,CRYBA1,GIT1,MYO18A,NUFIP2,TAOK1,TP53I13"
TCGA.CA.6719	17	27536631	37665553	2581	0.317	NEUTRAL	NA	136	Too-Many
TCGA.AG.4009.01A	17	27581231	27849256	22	0.1126	NEUTRAL	NA	3	"CRYBA1,NUFIP2,TAOK1"
TCGA.AA.3496	17	27647629	28807449	126	-0.1251	NEUTRAL	NA	14	"ABHD15,ANKRD13B,BLMH,CORO6,CPD,EFCAB5,GIT1,GOSR1,NSRP1,SLC6A4,SSH2,TAOK1,TMIGD1,TP53I13"
TCGA.AA.3517	17	27725002	30480346	371	0.0365	NEUTRAL	NA	30	"ABHD15,ADAP2,ANKRD13B,ATAD5,BLMH,COPRS,CORO6,CPD,CRLF3,EFCAB5,EVI2A,EVI2B,GIT1,GOSR1,LRRC37B,NF1,NSRP1,OMG,RAB11FIP4,RHOT1,RNF135,SLC6A4,SSH2,SUZ12,TAOK1,TBC1D29,TEFM,TMIGD1,TP53I13,UTP6"
TCGA.AA.A010.01A	17	27778515	27861119	18	0.1457	NEUTRAL	NA	1	TAOK1
TCGA.AA.3875	17	27779437	33347511	1647	0.0332	NEUTRAL	NA	51	"ABHD15,ADAP2,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf102,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,CDK5R1,COPRS,CORO6,CPD,CRLF3,EFCAB5,EVI2A,EVI2B,GIT1,GOSR1,LIG3,LRRC37B,MYO1D,NF1,NSRP1,OMG,PSMD11,RAB11FIP4,RFFL,RHBDL3,RHOT1,RNF135,SLC6A4,SPACA3,SSH2,SUZ12,TAOK1,TBC1D29,TEFM,TMEM132E,TMEM98,TMIGD1,TP53I13,UTP6,ZNF207,ZNF830"
TCGA.D5.6922	17	27814495	81048658	13716	-0.0251	NEUTRAL	NA	774	Too-Many
TCGA.AG.A01W.01A	17	27838731	30372472	113	0.0362	NEUTRAL	NA	29	"ABHD15,ADAP2,ANKRD13B,ATAD5,BLMH,COPRS,CORO6,CPD,CRLF3,EFCAB5,EVI2A,EVI2B,GIT1,GOSR1,LRRC37B,NF1,NSRP1,OMG,RAB11FIP4,RNF135,SLC6A4,SSH2,SUZ12,TAOK1,TBC1D29,TEFM,TMIGD1,TP53I13,UTP6"
TCGA.AA.3529	17	27857697	35476625	2160	-0.0163	NEUTRAL	NA	97	"AATF,ABHD15,ACACA,ADAP2,ANKRD13B,AP2B1,ASIC2,ATAD5,BLMH,C17orf102,C17orf50,C17orf75,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCL7,CCL8,CCT6B,CDK5R1,COPRS,CORO6,CPD,CRLF3,DHRS11,EFCAB5,EVI2A,EVI2B,FNDC8,GAS2L2,GGNBP2,GIT1,GOSR1,HEATR9,LHX1,LIG3,LOC101060321,LRRC37B,LYZL6,MMP28,MRM1,MYO19,MYO1D,NF1,NLE1,NSRP1,OMG,PEX12,PIGW,PSMD11,RAB11FIP4,RAD51D,RASL10B,RDM1,RFFL,RHBDL3,RHOT1,RNF135,SLC35G3,SLC6A4,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,SSH2,SUZ12,TAF15,TAOK1,TBC1D29,TBC1D3B,TBC1D3F,TBC1D3H,TEFM,TMEM132E,TMEM98,TMIGD1,TP53I13,UNC45B,UTP6,ZNF207,ZNF830,ZNHIT3"
TCGA.AA.3930.01A	17	27889577	27910463	17	-0.3594	NEUTRAL	NA	3	"ABHD15,GIT1,TP53I13"
TCGA.AA.A00L.01A	17	27889577	27943673	22	0.3143	NEUTRAL	NA	5	"ABHD15,ANKRD13B,CORO6,GIT1,TP53I13"
TCGA.AA.A01Q.01A	17	27901693	27943673	21	-0.4895	NEUTRAL	NA	3	"ANKRD13B,CORO6,GIT1"
TCGA.AA.A02K.01A	17	27934744	29848188	232	0.1574	NEUTRAL	NA	21	"ADAP2,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,EFCAB5,EVI2A,EVI2B,GOSR1,NF1,NSRP1,OMG,RAB11FIP4,RNF135,SLC6A4,SSH2,TBC1D29,TEFM,TMIGD1"
TCGA.AA.3930.01A	17	27934758	36991400	972	0.1723	NEUTRAL	NA	119	Too-Many
TCGA.A6.3808.01A	17	27939689	29159302	132	-0.1304	NEUTRAL	NA	13	"ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,EFCAB5,GOSR1,NSRP1,SLC6A4,SSH2,TBC1D29,TMIGD1"
TCGA.AA.A01Q.01A	17	27948220	29844680	194	0.1664	NEUTRAL	NA	20	"ADAP2,ATAD5,BLMH,CORO6,CPD,CRLF3,EFCAB5,EVI2A,EVI2B,GOSR1,NF1,NSRP1,OMG,RAB11FIP4,RNF135,SLC6A4,SSH2,TBC1D29,TEFM,TMIGD1"
TCGA.AG.4009.01A	17	27957822	28543060	53	0.3573	NEUTRAL	NA	4	"EFCAB5,NSRP1,SLC6A4,SSH2"
TCGA.AG.3909.01A	17	27958329	29657266	195	0.1522	NEUTRAL	NA	18	"ADAP2,ATAD5,BLMH,CPD,CRLF3,EFCAB5,EVI2A,EVI2B,GOSR1,NF1,NSRP1,OMG,RNF135,SLC6A4,SSH2,TBC1D29,TEFM,TMIGD1"
TCGA.AA.A010.01A	17	27975106	29677150	211	0.1561	NEUTRAL	NA	18	"ADAP2,ATAD5,BLMH,CPD,CRLF3,EFCAB5,EVI2A,EVI2B,GOSR1,NF1,NSRP1,OMG,RNF135,SLC6A4,SSH2,TBC1D29,TEFM,TMIGD1"
TCGA.AA.A00N.01A	17	27977624	28256889	11	0.2948	NEUTRAL	NA	2	"EFCAB5,SSH2"
TCGA.AA.3869	17	28148116	29158514	107	-0.3883	NEUTRAL	NA	10	"BLMH,CPD,CRLF3,EFCAB5,GOSR1,NSRP1,SLC6A4,SSH2,TBC1D29,TMIGD1"
TCGA.AF.2689	17	28376862	37092287	2436	-0.3964	NEUTRAL	NA	118	Too-Many
TCGA.AA.3524	17	28458104	36980576	2394	-0.0547	NEUTRAL	NA	114	Too-Many
TCGA.AA.A02O	17	28529141	28878816	51	-0.1216	NEUTRAL	NA	5	"BLMH,CPD,GOSR1,SLC6A4,TMIGD1"
TCGA.AG.4009.01A	17	28544156	28618342	14	-0.2312	NEUTRAL	NA	2	"BLMH,SLC6A4"
TCGA.A6.2681	17	28615072	76210366	12565	-0.0343	NEUTRAL	NA	671	Too-Many
TCGA.AA.A024.01A	17	28643605	29761017	150	0.0239	NEUTRAL	NA	14	"ADAP2,ATAD5,CPD,CRLF3,EVI2A,EVI2B,GOSR1,NF1,OMG,RAB11FIP4,RNF135,TBC1D29,TEFM,TMIGD1"
TCGA.AG.4009.01A	17	28643605	30647945	232	0.228	NEUTRAL	NA	20	"ADAP2,ATAD5,COPRS,CPD,CRLF3,EVI2A,EVI2B,GOSR1,LRRC37B,NF1,OMG,RAB11FIP4,RHBDL3,RHOT1,RNF135,SUZ12,TBC1D29,TEFM,TMIGD1,UTP6"
TCGA.G4.6317	17	28676526	81048658	13671	0.2575	NEUTRAL	NA	762	Too-Many
TCGA.AA.3509.01A	17	28772718	29161669	36	-0.0604	NEUTRAL	NA	5	"ATAD5,CPD,CRLF3,GOSR1,TBC1D29"
TCGA.AZ.4684.01A	17	28772718	29161669	36	-0.1245	NEUTRAL	NA	5	"ATAD5,CPD,CRLF3,GOSR1,TBC1D29"
TCGA.AG.4015	17	28804280	30475430	252	0.0644	NEUTRAL	NA	17	"ADAP2,ATAD5,COPRS,CRLF3,EVI2A,EVI2B,GOSR1,LRRC37B,NF1,OMG,RAB11FIP4,RHOT1,RNF135,SUZ12,TBC1D29,TEFM,UTP6"
TCGA.AA.A00N.01A	17	28817093	29325663	61	-0.3828	NEUTRAL	NA	7	"ADAP2,ATAD5,CRLF3,GOSR1,RNF135,TBC1D29,TEFM"
TCGA.AG.A026	17	28865968	29711410	85	0.1562	NEUTRAL	NA	10	"ADAP2,ATAD5,CRLF3,EVI2A,EVI2B,NF1,OMG,RNF135,TBC1D29,TEFM"
TCGA.RU.A8FL	17	28906295	29628548	64	0.235	NEUTRAL	NA	7	"ADAP2,ATAD5,CRLF3,NF1,OMG,RNF135,TEFM"
TCGA.F4.6461	17	28913614	41546287	3182	-0.0374	NEUTRAL	NA	274	Too-Many
TCGA.EI.6513	17	29076346	81048658	13629	-0.0114	NEUTRAL	NA	759	Too-Many
TCGA.AY.4070	17	29158338	29234504	9	0.1447	NEUTRAL	NA	2	"ATAD5,TEFM"
TCGA.NH.A50V	17	29158338	30785584	264	-0.0121	NEUTRAL	NA	18	"ADAP2,ATAD5,C17orf75,COPRS,EVI2A,EVI2B,LRRC37B,NF1,OMG,PSMD11,RAB11FIP4,RHBDL3,RHOT1,RNF135,SUZ12,TEFM,UTP6,ZNF207"
TCGA.AG.A00C.01A	17	29182124	29508666	39	0.2573	NEUTRAL	NA	5	"ADAP2,ATAD5,NF1,RNF135,TEFM"
TCGA.AG.3611.01A	17	29196227	34165381	398	0.2546	NEUTRAL	NA	53	"ADAP2,AP2B1,ASIC2,ATAD5,C17orf102,C17orf50,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,CDK5R1,COPRS,EVI2A,EVI2B,FNDC8,GAS2L2,LIG3,LRRC37B,MMP28,MYO1D,NF1,NLE1,OMG,PEX12,PSMD11,RAB11FIP4,RAD51D,RASL10B,RFFL,RHBDL3,RHOT1,RNF135,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,SUZ12,TAF15,TEFM,TMEM132E,TMEM98,UNC45B,UTP6,ZNF207,ZNF830"
TCGA.A6.3808.01A	17	29206427	30264225	124	-0.3481	NEUTRAL	NA	12	"ADAP2,ATAD5,COPRS,EVI2A,EVI2B,NF1,OMG,RAB11FIP4,RNF135,SUZ12,TEFM,UTP6"
TCGA.AA.3509.01A	17	29220275	29324208	20	-0.1069	NEUTRAL	NA	4	"ADAP2,ATAD5,RNF135,TEFM"
TCGA.AZ.4684.01A	17	29220275	29422290	22	-0.0722	NEUTRAL	NA	5	"ADAP2,ATAD5,NF1,RNF135,TEFM"
TCGA.AY.4070	17	29277113	29496342	22	0.2729	NEUTRAL	NA	3	"ADAP2,NF1,RNF135"
TCGA.AG.3906.01A	17	29508417	29858585	67	0.1518	NEUTRAL	NA	5	"EVI2A,EVI2B,NF1,OMG,RAB11FIP4"
TCGA.AG.A00C.01A	17	29509486	29631243	31	-0.2228	NEUTRAL	NA	3	"EVI2B,NF1,OMG"
TCGA.AA.A00D.01A	17	29509486	29654566	33	0.3236	NEUTRAL	NA	4	"EVI2A,EVI2B,NF1,OMG"
TCGA.CK.5914.01A	17	29527393	29657266	35	0.3759	NEUTRAL	NA	4	"EVI2A,EVI2B,NF1,OMG"
TCGA.DM.A28M.01A	17	29527393	44618110	2400	0.1648	NEUTRAL	NA	330	Too-Many
TCGA.CK.4948.01B	17	29556191	80962942	6480	0.1808	NEUTRAL	NA	753	Too-Many
TCGA.AY.4070	17	29572283	37836580	2388	0.0254	NEUTRAL	NA	120	Too-Many
TCGA.G4.6295	17	29578359	52596019	5715	-0.3895	NEUTRAL	NA	424	Too-Many
TCGA.AG.A00C.01A	17	29645280	30510143	88	0.2971	NEUTRAL	NA	8	"COPRS,EVI2A,LRRC37B,NF1,RAB11FIP4,RHOT1,SUZ12,UTP6"
TCGA.CK.5914.01A	17	29661809	30195011	44	-0.5114	NEUTRAL	NA	4	"COPRS,NF1,RAB11FIP4,UTP6"
TCGA.AG.3909.01A	17	29684250	29848137	8	-0.1204	NEUTRAL	NA	2	"NF1,RAB11FIP4"
TCGA.AA.3509.01A	17	29694183	30185711	24	0.0109	NEUTRAL	NA	3	"COPRS,NF1,RAB11FIP4"
TCGA.AZ.4684.01A	17	29694183	37381624	827	-0.1565	NEUTRAL	NA	108	Too-Many
TCGA.AA.3850	17	29708154	35525842	1977	0.23745	NEUTRAL	NA	73	"AATF,ACACA,AP2B1,ASIC2,C17orf102,C17orf50,C17orf75,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCL7,CCL8,CCT6B,CDK5R1,COPRS,DHRS11,FNDC8,GAS2L2,GGNBP2,HEATR9,LHX1,LIG3,LOC101060321,LRRC37B,LYZL6,MMP28,MRM1,MYO19,MYO1D,NLE1,PEX12,PIGW,PSMD11,RAB11FIP4,RAD51D,RASL10B,RDM1,RFFL,RHBDL3,RHOT1,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,SUZ12,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,TMEM132E,TMEM98,UNC45B,UTP6,ZNF207,ZNF830,ZNHIT3"
TCGA.AA.3869	17	29755008	29915707	42	-0.5032	NEUTRAL	NA	1	RAB11FIP4
TCGA.AG.A026	17	29755008	30945037	255	-0.0333	NEUTRAL	NA	12	"C17orf75,CDK5R1,COPRS,LRRC37B,MYO1D,PSMD11,RAB11FIP4,RHBDL3,RHOT1,SUZ12,UTP6,ZNF207"
TCGA.AA.A010.01A	17	29758778	29858585	13	-0.197	NEUTRAL	NA	1	RAB11FIP4
TCGA.AA.A00N.01A	17	29758778	29898113	15	0.2115	NEUTRAL	NA	1	RAB11FIP4
TCGA.AA.A00D.01A	17	29761017	30183755	15	0.2723	NEUTRAL	NA	2	"COPRS,RAB11FIP4"
TCGA.AA.A02K.01A	17	29848886	29854805	6	-0.4855	NEUTRAL	NA	1	RAB11FIP4
TCGA.AA.A024.01A	17	29850479	33316465	202	0.0393	NEUTRAL	NA	26	"ASIC2,C17orf102,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,CDK5R1,COPRS,LIG3,LRRC37B,MYO1D,PSMD11,RAB11FIP4,RHBDL3,RHOT1,SPACA3,SUZ12,TMEM132E,TMEM98,UTP6,ZNF207,ZNF830"
TCGA.AA.A02K.01A	17	29855378	36968983	732	0.1626	NEUTRAL	NA	98	"AATF,ACACA,AP2B1,ARHGAP23,ASIC2,C17orf102,C17orf50,C17orf75,C17orf78,C17orf96,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCL7,CCL8,CCT6B,CDK5R1,CISD3,COPRS,CWC25,DDX52,DHRS11,DUSP14,FNDC8,GAS2L2,GGNBP2,GPR179,HEATR9,HNF1B,LHX1,LIG3,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LRRC37B,LYZL6,MLLT6,MMP28,MRM1,MRPL45,MYO19,MYO1D,NLE1,PCGF2,PEX12,PIGW,PIP4K2B,PSMB3,PSMD11,RAB11FIP4,RAD51D,RASL10B,RDM1,RFFL,RHBDL3,RHOT1,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SOCS7,SPACA3,SRCIN1,SUZ12,SYNRG,TADA2A,TAF15,TBC1D3,TBC1D3B,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TMEM132E,TMEM98,UNC45B,UTP6,ZNF207,ZNF830,ZNHIT3"
TCGA.AG.3909.01A	17	29855417	30325660	40	0.0827	NEUTRAL	NA	4	"COPRS,RAB11FIP4,SUZ12,UTP6"
TCGA.AA.3869	17	29920939	30042950	44	-0.0211	NEUTRAL	NA	0	None
TCGA.RU.A8FL	17	29953400	81048658	13501	0.2033	NEUTRAL	NA	749	Too-Many
TCGA.AA.3695	17	29987514	34446914	1667	-0.0722	NEUTRAL	NA	55	"AP2B1,ASIC2,C17orf102,C17orf50,C17orf75,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL4,CCL5,CCL7,CCL8,CCT6B,CDK5R1,COPRS,FNDC8,GAS2L2,HEATR9,LIG3,LRRC37B,LYZL6,MMP28,MYO1D,NLE1,PEX12,PSMD11,RAD51D,RASL10B,RDM1,RFFL,RHBDL3,RHOT1,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,SUZ12,TAF15,TMEM132E,TMEM98,UNC45B,UTP6,ZNF207,ZNF830"
TCGA.AA.3869	17	30048754	30070875	14	0.2787	NEUTRAL	NA	0	None
TCGA.AA.3509.01A	17	30190339	30533891	63	-0.4914	NEUTRAL	NA	4	"LRRC37B,RHOT1,SUZ12,UTP6"
TCGA.AA.A01Q.01A	17	30195011	30801716	80	0.0549	NEUTRAL	NA	8	"C17orf75,LRRC37B,PSMD11,RHBDL3,RHOT1,SUZ12,UTP6,ZNF207"
TCGA.CK.5914.01A	17	30200360	30205664	5	-0.0129	NEUTRAL	NA	1	UTP6
TCGA.CK.5914.01A	17	30216252	30309968	15	-0.1384	NEUTRAL	NA	2	"SUZ12,UTP6"
TCGA.AY.A8YK	17	30315146	33065600	1216	-0.0861	NEUTRAL	NA	20	"ASIC2,C17orf102,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CDK5R1,LRRC37B,MYO1D,PSMD11,RHBDL3,RHOT1,SPACA3,SUZ12,TMEM132E,TMEM98,ZNF207"
TCGA.AA.3869	17	30331175	30906714	95	0.294	NEUTRAL	NA	8	"C17orf75,CDK5R1,LRRC37B,MYO1D,PSMD11,RHBDL3,RHOT1,ZNF207"
TCGA.AA.3862.01A	17	30469269	34397768	347	-0.132	NEUTRAL	NA	49	"AP2B1,ASIC2,C17orf102,C17orf50,C17orf75,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL5,CCL7,CCL8,CCT6B,CDK5R1,FNDC8,GAS2L2,HEATR9,LIG3,LYZL6,MMP28,MYO1D,NLE1,PEX12,PSMD11,RAD51D,RASL10B,RDM1,RFFL,RHBDL3,RHOT1,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,TAF15,TMEM132E,TMEM98,UNC45B,ZNF207,ZNF830"
TCGA.AA.3861.01A	17	30469269	44249094	2212	-0.0724	NEUTRAL	NA	317	Too-Many
TCGA.AG.A01W.01A	17	30469587	33054990	353	-0.037	NEUTRAL	NA	18	"ASIC2,C17orf102,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CDK5R1,MYO1D,PSMD11,RHBDL3,RHOT1,SPACA3,TMEM132E,TMEM98,ZNF207"
TCGA.AG.4015	17	30480179	30681353	37	0.3539	NEUTRAL	NA	4	"C17orf75,RHBDL3,RHOT1,ZNF207"
TCGA.CK.5914.01A	17	30519173	30527928	6	-0.243	NEUTRAL	NA	1	RHOT1
TCGA.AG.A00C.01A	17	30519173	30647945	21	-0.0585	NEUTRAL	NA	2	"RHBDL3,RHOT1"
TCGA.AG.3909.01A	17	30520138	30647945	20	0.1944	NEUTRAL	NA	2	"RHBDL3,RHOT1"
TCGA.AA.A00N.01A	17	30525912	30647945	18	0.1665	NEUTRAL	NA	2	"RHBDL3,RHOT1"
TCGA.CK.5914.01A	17	30529777	30632312	13	0.2953	NEUTRAL	NA	2	"RHBDL3,RHOT1"
TCGA.AA.3509.01A	17	30535089	34432560	339	-0.0107	NEUTRAL	NA	51	"AP2B1,ASIC2,C17orf102,C17orf50,C17orf75,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL4,CCL5,CCL7,CCL8,CCT6B,CDK5R1,FNDC8,GAS2L2,HEATR9,LIG3,LYZL6,MMP28,MYO1D,NLE1,PEX12,PSMD11,RAD51D,RASL10B,RDM1,RFFL,RHBDL3,RHOT1,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,TAF15,TMEM132E,TMEM98,UNC45B,ZNF207,ZNF830"
TCGA.AA.3517	17	30606300	31481895	255	0.0323	NEUTRAL	NA	9	"ASIC2,C17orf75,CDK5R1,MYO1D,PSMD11,RHBDL3,SPACA3,TMEM98,ZNF207"
TCGA.AG.4009.01A	17	30658745	30688409	14	-0.1626	NEUTRAL	NA	2	"C17orf75,ZNF207"
TCGA.AG.A00C.01A	17	30668167	30821739	27	0.2127	NEUTRAL	NA	5	"C17orf75,CDK5R1,MYO1D,PSMD11,ZNF207"
TCGA.AG.3891.01A	17	30685485	30791005	12	0.1079	NEUTRAL	NA	2	"PSMD11,ZNF207"
TCGA.AG.4009.01A	17	30689872	30796010	11	0.1661	NEUTRAL	NA	2	"PSMD11,ZNF207"
TCGA.AA.A00N.01A	17	30692341	30771486	6	0.2393	NEUTRAL	NA	2	"PSMD11,ZNF207"
TCGA.AG.3909.01A	17	30692341	30814642	18	-0.2733	NEUTRAL	NA	3	"CDK5R1,PSMD11,ZNF207"
TCGA.AG.4015	17	30692395	33512009	1283	-0.0216	NEUTRAL	NA	23	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,CDK5R1,FNDC8,LIG3,MYO1D,NLE1,PSMD11,RAD51D,RFFL,SPACA3,TMEM132E,TMEM98,UNC45B,ZNF207,ZNF830"
TCGA.AG.4009.01A	17	30800771	30821739	9	-0.3958	NEUTRAL	NA	3	"CDK5R1,MYO1D,PSMD11"
TCGA.AA.A01Q.01A	17	30804514	30821739	7	-0.4868	NEUTRAL	NA	3	"CDK5R1,MYO1D,PSMD11"
TCGA.AA.A00D.01A	17	30821739	33504473	147	0.2624	NEUTRAL	NA	20	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,FNDC8,LIG3,MYO1D,NLE1,RAD51D,RFFL,SPACA3,TMEM132E,TMEM98,UNC45B,ZNF830"
TCGA.G4.6322	17	30849409	50599382	4981	0.0186	NEUTRAL	NA	407	Too-Many
TCGA.AG.3906.01A	17	30932087	31107565	19	0.2514	NEUTRAL	NA	1	MYO1D
TCGA.AG.A00C.01A	17	30932087	31107565	19	-0.1845	NEUTRAL	NA	1	MYO1D
TCGA.AG.4009.01A	17	30932087	31258525	20	0.2898	NEUTRAL	NA	2	"MYO1D,TMEM98"
TCGA.CK.5914.01A	17	30932087	31261234	23	0.1325	NEUTRAL	NA	2	"MYO1D,TMEM98"
TCGA.AA.A01Q.01A	17	30932087	32908032	62	0.1957	NEUTRAL	NA	12	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,MYO1D,SPACA3,TMEM132E,TMEM98"
TCGA.AG.3891.01A	17	30932087	35634742	393	0.0906	NEUTRAL	NA	62	"AATF,ACACA,AP2B1,ASIC2,C17orf102,C17orf50,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCL7,CCL8,CCT6B,DHRS11,FNDC8,GAS2L2,GGNBP2,HEATR9,LHX1,LIG3,LOC101060321,LYZL6,MMP28,MRM1,MYO19,MYO1D,NLE1,PEX12,PIGW,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,TMEM132E,TMEM98,UNC45B,ZNF830,ZNHIT3"
TCGA.AG.A026	17	30948552	31242625	54	0.2066	NEUTRAL	NA	1	MYO1D
TCGA.AA.3866	17	31078221	31170398	20	-0.2241	NEUTRAL	NA	1	MYO1D
TCGA.AA.3866	17	31175102	39896061	2610	0.1198	NEUTRAL	NA	196	Too-Many
TCGA.AG.A00C.01A	17	31258525	31267792	6	0.3711	NEUTRAL	NA	1	TMEM98
TCGA.AG.4009.01A	17	31260144	31267792	5	-0.251	NEUTRAL	NA	1	TMEM98
TCGA.AG.A026	17	31261462	34436707	1418	-0.0554	NEUTRAL	NA	44	"AP2B1,ASIC2,C17orf102,C17orf50,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL4,CCL5,CCL7,CCL8,CCT6B,FNDC8,GAS2L2,HEATR9,LIG3,LYZL6,MMP28,NLE1,PEX12,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,TAF15,TMEM132E,TMEM98,UNC45B,ZNF830"
TCGA.DM.A1D0	17	31312526	32618980	753	-0.1677	NEUTRAL	NA	5	"ASIC2,CCL11,CCL2,CCL7,SPACA3"
TCGA.AG.A00C.01A	17	31318877	32690096	34	-0.2088	NEUTRAL	NA	8	"ASIC2,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,SPACA3"
TCGA.AG.3906.01A	17	31318877	35732964	371	0.3556	NEUTRAL	NA	60	"AATF,ACACA,AP2B1,ASIC2,C17orf102,C17orf50,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCL7,CCL8,CCT6B,DHRS11,FNDC8,GAS2L2,GGNBP2,HEATR9,LHX1,LIG3,LOC101060321,LYZL6,MMP28,MRM1,MYO19,NLE1,PEX12,PIGW,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,TMEM132E,UNC45B,ZNF830,ZNHIT3"
TCGA.A6.5656	17	31451419	81048658	13086	-0.0245	NEUTRAL	NA	736	Too-Many
TCGA.AA.3941	17	31526846	32546503	587	0.0383	NEUTRAL	NA	1	ASIC2
TCGA.AA.A01Z	17	31607869	36074978	1593	0.0187	NEUTRAL	NA	65	"AATF,ACACA,AP2B1,ASIC2,C17orf102,C17orf50,C17orf78,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCL7,CCL8,CCT6B,DDX52,DHRS11,DUSP14,FNDC8,GAS2L2,GGNBP2,HEATR9,HNF1B,LHX1,LIG3,LOC101060321,LYZL6,MMP28,MRM1,MYO19,NLE1,PEX12,PIGW,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SYNRG,TADA2A,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,TMEM132E,UNC45B,ZNF830,ZNHIT3"
TCGA.AA.A010.01A	17	31618389	32904505	21	-0.172	NEUTRAL	NA	8	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8"
TCGA.DC.6158	17	31839232	81048658	12850	-0.3099	NEUTRAL	NA	736	Too-Many
TCGA.AA.3517	17	31990384	36009976	1294	-0.0017	NEUTRAL	NA	64	"AATF,ACACA,AP2B1,ASIC2,C17orf102,C17orf50,C17orf78,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL2,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCL7,CCL8,CCT6B,DDX52,DHRS11,DUSP14,FNDC8,GAS2L2,GGNBP2,HEATR9,LHX1,LIG3,LOC101060321,LYZL6,MMP28,MRM1,MYO19,NLE1,PEX12,PIGW,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SYNRG,TADA2A,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,TMEM132E,UNC45B,ZNF830,ZNHIT3"
TCGA.AA.3549	17	32383215	33132966	422	0.2766	NEUTRAL	NA	9	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,TMEM132E"
TCGA.AA.3968	17	32384024	33224298	446	0.2657	NEUTRAL	NA	9	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,TMEM132E"
TCGA.AA.3941	17	32548516	33322321	379	-0.2027	NEUTRAL	NA	11	"C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,LIG3,TMEM132E,ZNF830"
TCGA.CM.5341	17	32585686	34461868	667	0.0707	NEUTRAL	NA	40	"AP2B1,C17orf102,C17orf50,CCL1,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL4,CCL5,CCL7,CCL8,CCT6B,FNDC8,GAS2L2,HEATR9,LIG3,LYZL6,MMP28,NLE1,PEX12,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,TMEM132E,UNC45B,ZNF830"
TCGA.A6.3808.01A	17	32598674	34171030	190	-0.0976	NEUTRAL	NA	29	"AP2B1,C17orf102,C17orf50,CCL1,CCL11,CCL13,CCL7,CCL8,CCT6B,FNDC8,GAS2L2,LIG3,MMP28,NLE1,PEX12,RAD51D,RASL10B,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,TMEM132E,UNC45B,ZNF830"
TCGA.AA.A00Q.01A	17	32690096	32964189	10	-0.3536	NEUTRAL	NA	3	"C17orf102,CCL1,TMEM132E"
TCGA.AA.A00L.01A	17	32690096	32964744	11	0.3252	NEUTRAL	NA	3	"C17orf102,CCL1,TMEM132E"
TCGA.NH.A50V	17	32802969	34188495	408	-0.0713	NEUTRAL	NA	25	"AP2B1,C17orf102,C17orf50,CCT6B,FNDC8,GAS2L2,HEATR9,LIG3,MMP28,NLE1,PEX12,RAD51D,RASL10B,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,TMEM132E,UNC45B,ZNF830"
TCGA.A6.6653	17	32842602	44162283	2427	-0.0207	NEUTRAL	NA	301	Too-Many
TCGA.CK.5914.01A	17	32904505	33324699	36	-0.2114	NEUTRAL	NA	5	"C17orf102,CCT6B,LIG3,TMEM132E,ZNF830"
TCGA.AG.A00C.01A	17	32904505	33328229	40	0.1563	NEUTRAL	NA	5	"C17orf102,CCT6B,LIG3,TMEM132E,ZNF830"
TCGA.AG.3909.01A	17	32964744	33288225	14	0.1182	NEUTRAL	NA	2	"CCT6B,TMEM132E"
TCGA.AA.A00Q.01A	17	32964744	33445493	46	0.2944	NEUTRAL	NA	6	"CCT6B,LIG3,RAD51D,RFFL,TMEM132E,ZNF830"
TCGA.A6.6138	17	32971762	33955242	280	0.0074	NEUTRAL	NA	17	"AP2B1,CCT6B,FNDC8,LIG3,NLE1,PEX12,RAD51D,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B,ZNF830"
TCGA.AG.A01W.01A	17	33058462	33752394	37	-0.3878	NEUTRAL	NA	12	"CCT6B,FNDC8,LIG3,NLE1,RAD51D,RFFL,SLC35G3,SLFN11,SLFN12,SLFN5,UNC45B,ZNF830"
TCGA.AA.3994	17	33097594	35622030	608	0.0972	NEUTRAL	NA	50	"AATF,ACACA,AP2B1,C17orf50,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCT6B,DHRS11,FNDC8,GAS2L2,GGNBP2,HEATR9,LHX1,LIG3,LOC101060321,LYZL6,MMP28,MRM1,MYO19,NLE1,PEX12,PIGW,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,UNC45B,ZNF830,ZNHIT3"
TCGA.AA.3549	17	33134160	81048658	12168	-0.2258	NEUTRAL	NA	727	Too-Many
TCGA.AA.A010.01A	17	33255014	33286560	12	-0.3211	NEUTRAL	NA	1	CCT6B
TCGA.AA.A01Q.01A	17	33255014	33445493	45	0.2489	NEUTRAL	NA	5	"CCT6B,LIG3,RAD51D,RFFL,ZNF830"
TCGA.AG.4009.01A	17	33255014	34062156	125	0.1875	NEUTRAL	NA	18	"AP2B1,CCT6B,FNDC8,LIG3,NLE1,PEX12,RAD51D,RASL10B,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B,ZNF830"
TCGA.DM.A1D0	17	33285995	34443799	307	-0.1128	NEUTRAL	NA	33	"AP2B1,C17orf50,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL4,CCL5,CCT6B,FNDC8,GAS2L2,HEATR9,LIG3,LYZL6,MMP28,NLE1,PEX12,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,UNC45B,ZNF830"
TCGA.AG.3909.01A	17	33309995	33317965	4	-0.4487	NEUTRAL	NA	1	LIG3
TCGA.AA.A004.01A	17	33316465	36943028	428	-0.1767	NEUTRAL	NA	72	"AATF,ACACA,AP2B1,ARHGAP23,C17orf50,C17orf78,C17orf96,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CISD3,DDX52,DHRS11,DUSP14,FNDC8,GAS2L2,GGNBP2,GPR179,HEATR9,HNF1B,LHX1,LIG3,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LYZL6,MLLT6,MMP28,MRM1,MRPL45,MYO19,NLE1,PCGF2,PEX12,PIGW,PIP4K2B,PSMB3,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SOCS7,SRCIN1,SYNRG,TADA2A,TAF15,TBC1D3,TBC1D3B,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,UNC45B,ZNHIT3"
TCGA.AA.A024.01A	17	33319491	47793476	2327	0.0492	NEUTRAL	NA	358	Too-Many
TCGA.AA.3941	17	33324677	39215185	1254	0.0371	NEUTRAL	NA	139	Too-Many
TCGA.AG.A00C.01A	17	33328891	33353343	10	-0.4403	NEUTRAL	NA	2	"LIG3,RFFL"
TCGA.AA.A010.01A	17	33329655	33446064	18	-0.0725	NEUTRAL	NA	3	"LIG3,RAD51D,RFFL"
TCGA.AA.3939.01A	17	33343358	33466212	26	0.0394	NEUTRAL	NA	4	"FNDC8,NLE1,RAD51D,RFFL"
TCGA.CK.5914.01A	17	33433386	33486352	28	-0.4437	NEUTRAL	NA	4	"FNDC8,NLE1,RAD51D,UNC45B"
TCGA.AA.A01Q.01A	17	33446064	33468950	16	-0.1934	NEUTRAL	NA	3	"FNDC8,NLE1,RAD51D"
TCGA.AA.A00Q.01A	17	33446064	33481543	21	-0.0615	NEUTRAL	NA	4	"FNDC8,NLE1,RAD51D,UNC45B"
TCGA.AA.A010.01A	17	33446495	34106197	105	0.2978	NEUTRAL	NA	17	"AP2B1,C17orf50,FNDC8,GAS2L2,MMP28,NLE1,PEX12,RAD51D,RASL10B,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B"
TCGA.AG.A00C.01A	17	33468950	33510409	19	-0.0996	NEUTRAL	NA	2	"NLE1,UNC45B"
TCGA.AA.A01Q.01A	17	33475262	34044212	65	0.189	NEUTRAL	NA	10	"AP2B1,PEX12,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B"
TCGA.AA.A00Q.01A	17	33482265	35641691	231	0.3263	NEUTRAL	NA	43	"AATF,ACACA,AP2B1,C17orf50,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,DHRS11,GAS2L2,GGNBP2,HEATR9,LHX1,LOC101060321,LYZL6,MMP28,MRM1,MYO19,PEX12,PIGW,RASL10B,RDM1,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,UNC45B,ZNHIT3"
TCGA.AA.3939.01A	17	33482265	78237433	5509	0.0698	NEUTRAL	NA	652	Too-Many
TCGA.AG.3909.01A	17	33510409	33935114	33	-0.511	NEUTRAL	NA	10	"AP2B1,PEX12,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B"
TCGA.CK.5914.01A	17	33510409	34264724	113	-0.2476	NEUTRAL	NA	19	"AP2B1,C17orf50,CCL5,GAS2L2,HEATR9,LYZL6,MMP28,PEX12,RASL10B,RDM1,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,UNC45B"
TCGA.AG.A00C.01A	17	33513271	33935114	30	0.2817	NEUTRAL	NA	10	"AP2B1,PEX12,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B"
TCGA.AA.A00N.01A	17	33513271	33954403	39	-0.4109	NEUTRAL	NA	10	"AP2B1,PEX12,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B"
TCGA.AG.4015	17	33539824	39720880	1387	0.0669	NEUTRAL	NA	168	Too-Many
TCGA.AA.3875	17	33584233	35808476	506	0.1734	NEUTRAL	NA	43	"AATF,ACACA,AP2B1,C17orf50,C17orf78,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,DHRS11,GAS2L2,GGNBP2,HEATR9,LHX1,LOC101060321,LYZL6,MMP28,MRM1,MYO19,PEX12,PIGW,RASL10B,RDM1,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TADA2A,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.AA.3968	17	33617801	35750454	490	-0.3331	NEUTRAL	NA	41	"AATF,ACACA,AP2B1,C17orf50,C17orf78,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,DHRS11,GAS2L2,GGNBP2,HEATR9,LHX1,LOC101060321,LYZL6,MMP28,MRM1,MYO19,PEX12,PIGW,RASL10B,RDM1,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.AG.A01W.01A	17	33761605	33901143	24	0.0773	NEUTRAL	NA	3	"SLFN12L,SLFN13,SLFN14"
TCGA.AZ.6600	17	33824902	33876128	19	0.1342	NEUTRAL	NA	1	SLFN14
TCGA.AZ.6600	17	33878223	37101379	708	-0.3094	NEUTRAL	NA	65	"AATF,ACACA,AP2B1,ARHGAP23,C17orf50,C17orf78,C17orf96,C17orf98,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CISD3,CWC25,DDX52,DHRS11,DUSP14,FBXO47,GAS2L2,GGNBP2,GPR179,HEATR9,HNF1B,LASP1,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LYZL6,MLLT6,MMP28,MRM1,MRPL45,MYO19,PCGF2,PEX12,PIGW,PIP4K2B,PSMB3,RASL10B,RDM1,RPL23,SLFN14,SOCS7,SRCIN1,SYNRG,TADA2A,TAF15,TBC1D3,TBC1D3B,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,ZNHIT3"
TCGA.AF.2692	17	33882719	38068042	838	0.0463	NEUTRAL	NA	85	"AATF,ACACA,AP2B1,ARHGAP23,ARL5C,C17orf50,C17orf78,C17orf96,C17orf98,CACNB1,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CDK12,CISD3,CWC25,DDX52,DHRS11,DUSP14,ERBB2,FBXL20,FBXO47,GAS2L2,GGNBP2,GPR179,GRB7,GSDMB,HEATR9,HNF1B,IKZF3,LASP1,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LYZL6,MED1,MIEN1,MLLT6,MMP28,MRM1,MRPL45,MYO19,NEUROD2,PCGF2,PEX12,PGAP3,PIGW,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,RASL10B,RDM1,RPL19,RPL23,SLFN14,SOCS7,SRCIN1,STAC2,STARD3,SYNRG,TADA2A,TAF15,TBC1D3,TBC1D3B,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,ZNHIT3,ZPBP2"
TCGA.AG.A01W.01A	17	33907477	33970041	14	-0.4281	NEUTRAL	NA	1	AP2B1
TCGA.AG.A00C.01A	17	33951386	34044212	15	-0.1459	NEUTRAL	NA	1	AP2B1
TCGA.AA.A00D.01A	17	33963348	34136477	25	0.2146	NEUTRAL	NA	6	"AP2B1,C17orf50,GAS2L2,MMP28,RASL10B,TAF15"
TCGA.AA.3688	17	33969406	69372863	8672	0.0583	NEUTRAL	NA	513	Too-Many
TCGA.AG.A01W.01A	17	33972540	34143019	27	0.3389	NEUTRAL	NA	6	"AP2B1,C17orf50,GAS2L2,MMP28,RASL10B,TAF15"
TCGA.AG.3909.01A	17	34036199	34165381	31	-0.4078	NEUTRAL	NA	6	"AP2B1,C17orf50,GAS2L2,MMP28,RASL10B,TAF15"
TCGA.AA.A01Q.01A	17	34050580	34100133	12	-0.3833	NEUTRAL	NA	5	"AP2B1,C17orf50,GAS2L2,MMP28,RASL10B"
TCGA.AG.A00C.01A	17	34050580	34165381	25	0.3102	NEUTRAL	NA	6	"AP2B1,C17orf50,GAS2L2,MMP28,RASL10B,TAF15"
TCGA.AG.4009.01A	17	34067380	34095217	12	-0.4343	NEUTRAL	NA	4	"C17orf50,GAS2L2,MMP28,RASL10B"
TCGA.AA.3496	17	34082397	34477385	125	0.0607	NEUTRAL	NA	14	"C17orf50,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL4,CCL5,HEATR9,LYZL6,MMP28,RDM1,TAF15"
TCGA.AA.A01Q.01A	17	34105841	34185875	19	0.2928	NEUTRAL	NA	3	"HEATR9,MMP28,TAF15"
TCGA.AG.A00C.01A	17	34169331	34416477	50	-0.2575	NEUTRAL	NA	11	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL5,HEATR9,LYZL6,RDM1,TAF15"
TCGA.AA.A00D.01A	17	34182018	34842490	51	0.1564	NEUTRAL	NA	20	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,HEATR9,LOC101060321,LYZL6,RDM1,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.AG.A01W.01A	17	34187419	34212443	9	0.2768	NEUTRAL	NA	2	"CCL5,HEATR9"
TCGA.AA.A01Q.01A	17	34189948	34252492	16	-0.1586	NEUTRAL	NA	3	"CCL5,HEATR9,RDM1"
TCGA.AG.A01W.01A	17	34216045	35072557	153	-0.3265	NEUTRAL	NA	23	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,DHRS11,GGNBP2,LOC101060321,LYZL6,MRM1,MYO19,PIGW,RDM1,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.A6.6138	17	34234952	41367400	1459	0.0094	NEUTRAL	NA	217	Too-Many
TCGA.AA.3488	17	34274212	34821057	99	-0.4385	NEUTRAL	NA	15	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,LOC101060321,TBC1D3B,TBC1D3F,TBC1D3H"
TCGA.AA.A010.01A	17	34391637	34867158	31	0.3275	NEUTRAL	NA	13	"CCL18,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,LOC101060321,MYO19,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.AG.4009.01A	17	34398255	34883858	31	0.2059	NEUTRAL	NA	13	"CCL18,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,LOC101060321,MYO19,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.AG.A00C.01A	17	34417267	35311053	58	0.2399	NEUTRAL	NA	18	"AATF,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,DHRS11,GGNBP2,LHX1,LOC101060321,MRM1,MYO19,PIGW,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.AF.A56N	17	34443799	34821057	17	-0.3552	NEUTRAL	NA	8	"CCL3L1,CCL3L3,CCL4L1,CCL4L2,LOC101060321,TBC1D3B,TBC1D3F,TBC1D3H"
TCGA.DM.A1D0	17	34446914	34819190	15	0.2802	NEUTRAL	NA	8	"CCL3L1,CCL3L3,CCL4L1,CCL4L2,LOC101060321,TBC1D3B,TBC1D3F,TBC1D3H"
TCGA.AA.3695	17	34456072	34821057	12	-0.3272	NEUTRAL	NA	8	"CCL3L1,CCL3L3,CCL4L1,CCL4L2,LOC101060321,TBC1D3B,TBC1D3F,TBC1D3H"
TCGA.F4.6704	17	34461453	40232013	1222	-0.0193	NEUTRAL	NA	163	Too-Many
TCGA.AY.A71X	17	34461453	53917880	4496	-0.05	NEUTRAL	NA	371	Too-Many
TCGA.CM.5341	17	34477385	37246537	567	0.0907	NEUTRAL	NA	47	"AATF,ACACA,ARHGAP23,C17orf78,C17orf96,C17orf98,CCL3L1,CCL3L3,CCL4L1,CCL4L2,CISD3,CWC25,DDX52,DHRS11,DUSP14,FBXO47,GGNBP2,GPR179,HNF1B,LASP1,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRM1,MRPL45,MYO19,PCGF2,PIGW,PIP4K2B,PLXDC1,PSMB3,RPL23,SOCS7,SRCIN1,SYNRG,TADA2A,TBC1D3,TBC1D3B,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,ZNHIT3"
TCGA.CM.6163	17	34477479	44162596	1926	-0.0327	NEUTRAL	NA	266	Too-Many
TCGA.AA.3509.01A	17	34624206	35444203	73	-0.112	NEUTRAL	NA	17	"AATF,ACACA,CCL3L1,CCL3L3,CCL4L1,CCL4L2,DHRS11,GGNBP2,LHX1,LOC101060321,MRM1,MYO19,PIGW,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.AA.3556	17	34816255	34842520	10	-0.1719	NEUTRAL	NA	1	ZNHIT3
TCGA.AH.6643	17	34816255	37836580	640	0.1265	NEUTRAL	NA	55	"AATF,ACACA,ARHGAP23,ARL5C,C17orf78,C17orf96,C17orf98,CACNB1,CDK12,CISD3,CWC25,DDX52,DHRS11,DUSP14,FBXL20,FBXO47,GGNBP2,GPR179,HNF1B,LASP1,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MED1,MLLT6,MRM1,MRPL45,MYO19,NEUROD2,PCGF2,PGAP3,PIGW,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,RPL19,RPL23,SOCS7,SRCIN1,STAC2,STARD3,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,ZNHIT3"
TCGA.CI.6622	17	34816255	61484504	6160	-0.0056	NEUTRAL	NA	430	Too-Many
TCGA.AZ.5403	17	34816255	81048658	11787	-0.0284	NEUTRAL	NA	689	Too-Many
TCGA.G4.6299	17	34816255	81048658	11811	0.2247	NEUTRAL	NA	689	Too-Many
TCGA.AG.A026	17	34819190	39029804	839	-0.0349	NEUTRAL	NA	90	"AATF,ACACA,ARHGAP23,ARL5C,C17orf78,C17orf96,C17orf98,CACNB1,CASC3,CCR7,CDC6,CDK12,CISD3,CSF3,CWC25,DDX52,DHRS11,DUSP14,ERBB2,FBXL20,FBXO47,GGNBP2,GJD3,GPR179,GRB7,GSDMA,GSDMB,HNF1B,IGFBP4,IKZF3,KRT10,KRT12,KRT222,KRT24,KRT25,KRT26,KRT27,KRT28,LASP1,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LRRC3C,MED1,MED24,MIEN1,MLLT6,MRM1,MRPL45,MSL1,MYO19,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIGW,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SMARCE1,SOCS7,SRCIN1,STAC2,STARD3,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,THRA,TMEM99,TNS4,TOP2A,WIPF2,ZNHIT3,ZPBP2"
TCGA.AF.A56N	17	34823203	39275130	969	0.1008	NEUTRAL	NA	109	Too-Many
TCGA.AA.3695	17	34823203	46617018	2377	0.332	NEUTRAL	NA	293	Too-Many
TCGA.AA.3488	17	34823203	81048658	11796	0.0761	NEUTRAL	NA	689	Too-Many
TCGA.DC.6682	17	34824701	35068309	69	0.0166	NEUTRAL	NA	6	"DHRS11,GGNBP2,MRM1,MYO19,PIGW,ZNHIT3"
TCGA.A6.3808.01A	17	34842490	34881012	23	-0.1438	NEUTRAL	NA	2	"MYO19,ZNHIT3"
TCGA.AA.A01Q.01A	17	34842490	35297600	31	-0.3734	NEUTRAL	NA	7	"DHRS11,GGNBP2,LHX1,MRM1,MYO19,PIGW,ZNHIT3"
TCGA.AA.3862.01A	17	34842490	36104520	194	-0.3854	NEUTRAL	NA	15	"AATF,ACACA,C17orf78,DDX52,DHRS11,DUSP14,GGNBP2,HNF1B,LHX1,MRM1,MYO19,PIGW,SYNRG,TADA2A,ZNHIT3"
TCGA.AA.3556	17	34848873	35184152	123	0.0609	NEUTRAL	NA	6	"DHRS11,GGNBP2,MRM1,MYO19,PIGW,ZNHIT3"
TCGA.AA.A00N.01A	17	34854143	34883858	20	-0.4007	NEUTRAL	NA	2	"MYO19,ZNHIT3"
TCGA.AG.3611.01A	17	34856653	34916571	7	-0.0483	NEUTRAL	NA	3	"GGNBP2,MYO19,PIGW"
TCGA.CK.5914.01A	17	34859724	34883858	16	0.2081	NEUTRAL	NA	1	MYO19
TCGA.AG.3909.01A	17	34861108	34883858	15	-0.1086	NEUTRAL	NA	1	MYO19
TCGA.AA.A010.01A	17	34869223	34955323	27	-0.4207	NEUTRAL	NA	4	"DHRS11,GGNBP2,MYO19,PIGW"
TCGA.AG.4009.01A	17	34892911	35310149	28	-0.2544	NEUTRAL	NA	6	"AATF,DHRS11,GGNBP2,LHX1,MRM1,PIGW"
TCGA.AG.3611.01A	17	34923455	35771369	86	0.2983	NEUTRAL	NA	8	"AATF,ACACA,C17orf78,DHRS11,GGNBP2,LHX1,MRM1,TADA2A"
TCGA.AA.A00D.01A	17	34951364	35297600	11	0.3568	NEUTRAL	NA	3	"DHRS11,LHX1,MRM1"
TCGA.AG.3909.01A	17	34954553	34964647	8	-0.3777	NEUTRAL	NA	2	"DHRS11,MRM1"
TCGA.CK.5914.01A	17	34954553	35902037	115	0.0861	NEUTRAL	NA	9	"AATF,ACACA,C17orf78,DHRS11,DUSP14,LHX1,MRM1,SYNRG,TADA2A"
TCGA.AA.A010.01A	17	34956050	35346528	18	0.1802	NEUTRAL	NA	4	"AATF,DHRS11,LHX1,MRM1"
TCGA.AG.A00H.01A	17	34958188	36918625	202	-0.2274	NEUTRAL	NA	30	"AATF,ACACA,ARHGAP23,C17orf78,C17orf96,CISD3,DDX52,DUSP14,GPR179,HNF1B,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRM1,MRPL45,PCGF2,PSMB3,SOCS7,SRCIN1,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AG.A01W.01A	17	35119057	35241807	34	-0.0494	NEUTRAL	NA	0	None
TCGA.DM.A0XF	17	35227060	53488035	4145	0.1206	NEUTRAL	NA	358	Too-Many
TCGA.AA.A01Q.01A	17	35299506	36720317	156	0.2156	NEUTRAL	NA	24	"AATF,ACACA,ARHGAP23,C17orf78,DDX52,DUSP14,GPR179,HNF1B,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MRPL45,SOCS7,SRCIN1,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AG.4009.01A	17	35311053	35902037	98	0.257	NEUTRAL	NA	6	"AATF,ACACA,C17orf78,DUSP14,SYNRG,TADA2A"
TCGA.AG.A01W.01A	17	35314553	35445824	53	-0.1917	NEUTRAL	NA	2	"AATF,ACACA"
TCGA.AG.A00C.01A	17	35343889	35687112	63	-0.1838	NEUTRAL	NA	2	"AATF,ACACA"
TCGA.AA.A00D.01A	17	35345826	35640120	59	0.296	NEUTRAL	NA	2	"AATF,ACACA"
TCGA.AA.3509.01A	17	35445824	35687112	54	0.2697	NEUTRAL	NA	1	ACACA
TCGA.AG.A01W.01A	17	35509778	35538808	3	-0.4523	NEUTRAL	NA	1	ACACA
TCGA.AG.A01W.01A	17	35539033	35577939	18	-0.0395	NEUTRAL	NA	1	ACACA
TCGA.AG.A01W.01A	17	35579052	35722883	35	-0.4918	NEUTRAL	NA	1	ACACA
TCGA.AA.A010.01A	17	35627625	35696710	10	-0.0432	NEUTRAL	NA	1	ACACA
TCGA.AG.A00C.01A	17	35696710	38024552	324	0.1556	NEUTRAL	NA	52	"ACACA,ARHGAP23,ARL5C,C17orf78,C17orf96,C17orf98,CACNB1,CDK12,CISD3,CWC25,DDX52,DUSP14,ERBB2,FBXL20,FBXO47,GPR179,GRB7,HNF1B,IKZF3,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MED1,MIEN1,MLLT6,MRPL45,NEUROD2,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,RPL19,RPL23,SOCS7,SRCIN1,STAC2,STARD3,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,ZPBP2"
TCGA.AG.A01W.01A	17	35726630	35774724	24	0.006	NEUTRAL	NA	3	"ACACA,C17orf78,TADA2A"
TCGA.AG.3909.01A	17	35732964	35771369	9	-0.166	NEUTRAL	NA	3	"ACACA,C17orf78,TADA2A"
TCGA.AA.3968	17	35762106	39352671	743	0.0493	NEUTRAL	NA	108	Too-Many
TCGA.AG.3594	17	35773798	44166454	1673	0.0557	NEUTRAL	NA	251	Too-Many
TCGA.AG.3909.01A	17	35783567	35913199	25	0.2106	NEUTRAL	NA	3	"DUSP14,SYNRG,TADA2A"
TCGA.AG.A01W.01A	17	35797763	35823212	24	-0.4218	NEUTRAL	NA	1	TADA2A
TCGA.AG.3611.01A	17	35822102	38935717	444	0.326	NEUTRAL	NA	76	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CASC3,CCR7,CDC6,CDK12,CISD3,CSF3,CWC25,DDX52,DUSP14,ERBB2,FBXL20,FBXO47,GJD3,GPR179,GRB7,GSDMA,GSDMB,HNF1B,IGFBP4,IKZF3,KRT222,KRT24,KRT25,KRT26,KRT27,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LRRC3C,MED1,MED24,MIEN1,MLLT6,MRPL45,MSL1,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SMARCE1,SOCS7,SRCIN1,STAC2,STARD3,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,THRA,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AG.A01W.01A	17	35825719	35827480	4	0.2954	NEUTRAL	NA	1	TADA2A
TCGA.AA.3509.01A	17	35827536	37099796	196	-0.1866	NEUTRAL	NA	31	"ARHGAP23,C17orf96,C17orf98,CISD3,CWC25,DDX52,DUSP14,FBXO47,GPR179,HNF1B,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRPL45,PCGF2,PIP4K2B,PSMB3,RPL23,SOCS7,SRCIN1,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AA.A00N.01A	17	35872385	35913199	12	0.3466	NEUTRAL	NA	2	"DUSP14,SYNRG"
TCGA.AA.A00D.01A	17	35872385	35914010	12	0.3456	NEUTRAL	NA	2	"DUSP14,SYNRG"
TCGA.AG.3906.01A	17	35872385	35988568	33	0.3325	NEUTRAL	NA	3	"DDX52,DUSP14,SYNRG"
TCGA.AA.A010.01A	17	35879006	35960418	24	-0.2459	NEUTRAL	NA	1	SYNRG
TCGA.AG.3891.01A	17	35880589	36104520	44	0.1607	NEUTRAL	NA	3	"DDX52,HNF1B,SYNRG"
TCGA.DC.6160.01A	17	35887329	37033829	250	0.3084	NEUTRAL	NA	28	"ARHGAP23,C17orf96,C17orf98,CISD3,CWC25,DDX52,GPR179,HNF1B,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRPL45,PCGF2,PIP4K2B,PSMB3,RPL23,SOCS7,SRCIN1,SYNRG,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AG.A01W.01A	17	35905717	36158994	28	0.1681	NEUTRAL	NA	3	"DDX52,HNF1B,SYNRG"
TCGA.AG.4009.01A	17	35913199	35978282	16	-0.4175	NEUTRAL	NA	2	"DDX52,SYNRG"
TCGA.AA.3972	17	35952982	44162596	1636	0.2337	NEUTRAL	NA	249	Too-Many
TCGA.AG.4009.01A	17	35979752	36002091	11	0.0672	NEUTRAL	NA	1	DDX52
TCGA.AA.A00N.01A	17	35984338	36002091	8	-0.3207	NEUTRAL	NA	1	DDX52
TCGA.AA.A01F.01A	17	35986774	36047289	8	0.0356	NEUTRAL	NA	2	"DDX52,HNF1B"
TCGA.AA.3975	17	36038787	39896061	841	0.0332	NEUTRAL	NA	132	Too-Many
TCGA.AA.A010.01A	17	36064877	36508230	28	-0.1302	NEUTRAL	NA	14	"GPR179,HNF1B,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MRPL45,SOCS7,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AA.A00N.01A	17	36064877	36971075	127	-0.4268	NEUTRAL	NA	23	"ARHGAP23,C17orf96,CISD3,CWC25,GPR179,HNF1B,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRPL45,PCGF2,PIP4K2B,PSMB3,SOCS7,SRCIN1,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AG.4009.01A	17	36093508	36454378	4	-0.0214	NEUTRAL	NA	12	"HNF1B,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MRPL45,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.DM.A288	17	36164307	81048658	11399	0.0188	NEUTRAL	NA	674	Too-Many
TCGA.AG.A01W.01A	17	36186731	36899143	141	0.1398	NEUTRAL	NA	19	"ARHGAP23,C17orf96,CISD3,GPR179,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRPL45,PCGF2,SOCS7,SRCIN1,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AA.3517	17	36441092	37836580	226	0.0298	NEUTRAL	NA	30	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CDK12,CISD3,CWC25,FBXL20,FBXO47,GPR179,LASP1,MED1,MLLT6,MRPL45,NEUROD2,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,RPL19,RPL23,SOCS7,SRCIN1,STAC2,STARD3,TCAP"
TCGA.A6.3808.01A	17	36474511	36622410	29	0.1352	NEUTRAL	NA	4	"ARHGAP23,GPR179,MRPL45,SOCS7"
TCGA.AA.3862.01A	17	36474511	36628054	32	-0.1439	NEUTRAL	NA	4	"ARHGAP23,GPR179,MRPL45,SOCS7"
TCGA.AG.3909.01A	17	36474511	36912088	64	-0.0495	NEUTRAL	NA	10	"ARHGAP23,C17orf96,CISD3,GPR179,MLLT6,MRPL45,PCGF2,PSMB3,SOCS7,SRCIN1"
TCGA.AA.A01D.01A	17	36482361	40673005	792	-0.3936	NEUTRAL	NA	144	Too-Many
TCGA.AG.4009.01A	17	36492811	36708651	19	0.0395	NEUTRAL	NA	4	"ARHGAP23,GPR179,SOCS7,SRCIN1"
TCGA.AA.A02E.01A	17	36492811	40267709	731	-0.303	NEUTRAL	NA	134	Too-Many
TCGA.EI.6509	17	36529409	36593016	16	0.0335	NEUTRAL	NA	2	"ARHGAP23,SOCS7"
TCGA.AA.3811	17	36592352	38770964	333	0.256	NEUTRAL	NA	52	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CASC3,CCR7,CDC6,CDK12,CISD3,CSF3,CWC25,ERBB2,FBXL20,FBXO47,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,LASP1,LRRC3C,MED1,MED24,MIEN1,MLLT6,MSL1,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SRCIN1,STAC2,STARD3,TCAP,THRA,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.CK.5914.01A	17	36619053	36908993	68	-0.4658	NEUTRAL	NA	7	"ARHGAP23,C17orf96,CISD3,MLLT6,PCGF2,PSMB3,SRCIN1"
TCGA.AA.3862.01A	17	36666133	39197421	538	-0.2086	NEUTRAL	NA	73	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CASC3,CCR7,CDC6,CDK12,CISD3,CSF3,CWC25,ERBB2,FBXL20,FBXO47,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP3-1,KRTAP3-2,KRTAP3-3,LASP1,LRRC3C,MED1,MED24,MIEN1,MLLT6,MSL1,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SMARCE1,SRCIN1,STAC2,STARD3,TCAP,THRA,TMEM99,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.A6.3808.01A	17	36666133	39673031	660	-0.0446	NEUTRAL	NA	110	Too-Many
TCGA.CK.4952.01A	17	36685757	41738587	1074	-0.1039	NEUTRAL	NA	178	Too-Many
TCGA.AG.3891.01A	17	36700011	36734726	15	0.0444	NEUTRAL	NA	1	SRCIN1
TCGA.AG.3906.01A	17	36716514	36829557	5	-0.0065	NEUTRAL	NA	2	"C17orf96,SRCIN1"
TCGA.AG.3742	17	36824187	39290305	500	0.3487	NEUTRAL	NA	80	"ARL5C,C17orf96,C17orf98,CACNB1,CASC3,CCR7,CDC6,CDK12,CISD3,CSF3,CWC25,ERBB2,FBXL20,FBXO47,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-11,KRTAP4-12,KRTAP4-7,KRTAP4-8,KRTAP4-9,LASP1,LRRC3C,MED1,MED24,MIEN1,MLLT6,MSL1,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SMARCE1,STAC2,STARD3,TCAP,THRA,TMEM99,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.EI.6509	17	36859308	37055076	45	-0.4765	NEUTRAL	NA	9	"C17orf98,CISD3,CWC25,LASP1,MLLT6,PCGF2,PIP4K2B,PSMB3,RPL23"
TCGA.AG.3898	17	36875314	37175134	64	0.0305	NEUTRAL	NA	10	"C17orf98,CISD3,CWC25,FBXO47,LASP1,MLLT6,PCGF2,PIP4K2B,PSMB3,RPL23"
TCGA.AA.A01Q.01A	17	36887523	37333498	63	-0.1235	NEUTRAL	NA	12	"ARL5C,C17orf98,CACNB1,CISD3,CWC25,FBXO47,LASP1,PCGF2,PIP4K2B,PLXDC1,PSMB3,RPL23"
TCGA.AG.4009.01A	17	36908993	37226081	49	0.1782	NEUTRAL	NA	8	"C17orf98,CWC25,FBXO47,LASP1,PIP4K2B,PLXDC1,PSMB3,RPL23"
TCGA.CK.5914.01A	17	36909396	37074809	40	0.0846	NEUTRAL	NA	6	"C17orf98,CWC25,LASP1,PIP4K2B,PSMB3,RPL23"
TCGA.AG.3909.01A	17	36916637	37113372	42	0.2966	NEUTRAL	NA	7	"C17orf98,CWC25,FBXO47,LASP1,PIP4K2B,PSMB3,RPL23"
TCGA.AG.A01W.01A	17	36923754	37125178	36	0.0056	NEUTRAL	NA	6	"C17orf98,CWC25,FBXO47,LASP1,PIP4K2B,RPL23"
TCGA.AG.A00H.01A	17	36933892	36955469	7	-0.0271	NEUTRAL	NA	1	PIP4K2B
TCGA.AA.3875	17	36934474	37332962	86	0.0821	NEUTRAL	NA	9	"ARL5C,C17orf98,CACNB1,CWC25,FBXO47,LASP1,PIP4K2B,PLXDC1,RPL23"
TCGA.AA.A00O.01A	17	36962500	38812622	343	-0.1641	NEUTRAL	NA	46	"ARL5C,C17orf98,CACNB1,CASC3,CCR7,CDC6,CDK12,CSF3,CWC25,ERBB2,FBXL20,FBXO47,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT222,LASP1,LRRC3C,MED1,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PLXDC1,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SMARCE1,STAC2,STARD3,TCAP,THRA,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AG.A025.01A	17	36962500	40723496	822	-0.267	NEUTRAL	NA	138	Too-Many
TCGA.AG.A00H.01A	17	36962500	46051704	1611	-0.3356	NEUTRAL	NA	251	Too-Many
TCGA.AA.A004.01A	17	36962500	59480385	2569	-0.1832	NEUTRAL	NA	382	Too-Many
TCGA.AA.A010.01A	17	36977114	37098984	20	0.28	NEUTRAL	NA	5	"C17orf98,CWC25,FBXO47,LASP1,RPL23"
TCGA.AA.3524	17	36991975	37789431	115	-0.0232	NEUTRAL	NA	14	"ARL5C,C17orf98,CACNB1,CDK12,FBXL20,FBXO47,LASP1,MED1,NEUROD2,PLXDC1,PPP1R1B,RPL19,RPL23,STAC2"
TCGA.AA.A00N.01A	17	37004190	37034287	7	-0.4498	NEUTRAL	NA	2	"LASP1,RPL23"
TCGA.AG.3906.01A	17	37008807	37034287	5	0.3753	NEUTRAL	NA	2	"LASP1,RPL23"
TCGA.DC.6160.01A	17	37098766	78645394	5109	-0.0113	NEUTRAL	NA	584	Too-Many
TCGA.AF.2689	17	37101379	42041610	970	0.1285	NEUTRAL	NA	175	Too-Many
TCGA.CK.5914.01A	17	37107787	37295869	19	0.3269	NEUTRAL	NA	2	"FBXO47,PLXDC1"
TCGA.AG.A01W.01A	17	37134433	37348708	84	-0.4653	NEUTRAL	NA	3	"ARL5C,CACNB1,PLXDC1"
TCGA.AA.A00Q.01A	17	37224041	37370988	31	-0.0134	NEUTRAL	NA	5	"ARL5C,CACNB1,PLXDC1,RPL19,STAC2"
TCGA.AA.3509.01A	17	37224041	37381624	51	-0.0753	NEUTRAL	NA	5	"ARL5C,CACNB1,PLXDC1,RPL19,STAC2"
TCGA.CM.6165.01A	17	37262060	37307552	7	0.239	NEUTRAL	NA	1	PLXDC1
TCGA.A6.2678	17	37272792	37439495	23	0.3464	NEUTRAL	NA	6	"ARL5C,CACNB1,FBXL20,PLXDC1,RPL19,STAC2"
TCGA.AG.3909.01A	17	37295869	37333498	4	-0.0553	NEUTRAL	NA	3	"ARL5C,CACNB1,PLXDC1"
TCGA.AA.A00N.01A	17	37313073	37356504	22	-0.3981	NEUTRAL	NA	2	"ARL5C,CACNB1"
TCGA.CM.6165.01A	17	37313073	38290476	239	-0.1348	NEUTRAL	NA	28	"ARL5C,CACNB1,CDK12,CSF3,ERBB2,FBXL20,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED1,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,RPL19,STAC2,STARD3,TCAP,THRA,ZPBP2"
TCGA.AA.A010.01A	17	37321914	37356504	17	0.1518	NEUTRAL	NA	2	"ARL5C,CACNB1"
TCGA.F4.6809	17	37349654	52353350	3332	-0.4614	NEUTRAL	NA	316	Too-Many
TCGA.AG.4009.01A	17	37357416	37368496	6	0.2925	NEUTRAL	NA	2	"RPL19,STAC2"
TCGA.AA.A010.01A	17	37357416	37373302	12	-0.3443	NEUTRAL	NA	2	"RPL19,STAC2"
TCGA.AG.A01W.01A	17	37360491	37571791	59	-0.3198	NEUTRAL	NA	4	"FBXL20,MED1,RPL19,STAC2"
TCGA.AG.3909.01A	17	37368496	37373302	6	-0.4637	NEUTRAL	NA	1	STAC2
TCGA.AG.4009.01A	17	37369200	37373302	5	-0.2947	NEUTRAL	NA	1	STAC2
TCGA.CK.5914.01A	17	37373032	37459764	17	0.0271	NEUTRAL	NA	2	"FBXL20,STAC2"
TCGA.AA.A00N.01A	17	37374070	37459764	15	0.2696	NEUTRAL	NA	2	"FBXL20,STAC2"
TCGA.AG.3909.01A	17	37374070	37686878	46	0.357	NEUTRAL	NA	4	"CDK12,FBXL20,MED1,STAC2"
TCGA.EI.6509	17	37401050	37671489	24	-0.3929	NEUTRAL	NA	3	"CDK12,FBXL20,MED1"
TCGA.AA.A01Q.01A	17	37417661	37785754	50	0.1739	NEUTRAL	NA	5	"CDK12,FBXL20,MED1,NEUROD2,PPP1R1B"
TCGA.A6.2678	17	37441108	59472402	5283	0.0011	NEUTRAL	NA	371	Too-Many
TCGA.AG.4009.01A	17	37499377	37575933	6	-0.1079	NEUTRAL	NA	2	"FBXL20,MED1"
TCGA.CK.5914.01A	17	37499377	37657501	25	-0.3685	NEUTRAL	NA	3	"CDK12,FBXL20,MED1"
TCGA.AA.A010.01A	17	37561445	37583898	9	-0.4658	NEUTRAL	NA	1	MED1
TCGA.AG.A01W.01A	17	37575000	37590801	9	0.3222	NEUTRAL	NA	1	MED1
TCGA.AG.A01W.01A	17	37595201	37598870	6	-0.2594	NEUTRAL	NA	1	MED1
TCGA.AA.A00N.01A	17	37607214	37673642	11	0.3468	NEUTRAL	NA	2	"CDK12,MED1"
TCGA.AG.A01W.01A	17	37621513	37926532	65	-0.1871	NEUTRAL	NA	11	"CDK12,ERBB2,GRB7,IKZF3,MIEN1,NEUROD2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.AA.3509.01A	17	37667740	39421595	400	-0.0995	NEUTRAL	NA	74	"CASC3,CCR7,CDC6,CDK12,CSF3,ERBB2,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-8,KRTAP9-9,LRRC3C,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,SMARCE1,STARD3,TCAP,THRA,TMEM99,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AZ.4684.01A	17	37667740	39421595	400	-0.1639	NEUTRAL	NA	74	"CASC3,CCR7,CDC6,CDK12,CSF3,ERBB2,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-8,KRTAP9-9,LRRC3C,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,SMARCE1,STARD3,TCAP,THRA,TMEM99,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AG.3581	17	37671489	38225020	92	0.3323	NEUTRAL	NA	20	"CDK12,CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,NEUROD2,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,STARD3,TCAP,THRA,ZPBP2"
TCGA.AA.3930.01A	17	37680917	37785754	9	-0.2822	NEUTRAL	NA	3	"CDK12,NEUROD2,PPP1R1B"
TCGA.AF.3914.01A	17	37761697	37778034	2	0.1255	NEUTRAL	NA	1	NEUROD2
TCGA.AG.4009.01A	17	37761697	37865530	29	-0.0187	NEUTRAL	NA	7	"ERBB2,NEUROD2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.AA.A00N.01A	17	37761697	38024552	73	-0.4788	NEUTRAL	NA	11	"ERBB2,GRB7,IKZF3,MIEN1,NEUROD2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP,ZPBP2"
TCGA.AA.A00Q.01A	17	37761697	39120651	277	0.1219	NEUTRAL	NA	44	"CASC3,CCR7,CDC6,CSF3,ERBB2,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,LRRC3C,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,SMARCE1,STARD3,TCAP,THRA,TMEM99,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AH.6549.01A	17	37785352	41290749	953	0.0031	NEUTRAL	NA	151	Too-Many
TCGA.AA.A010.01A	17	37809736	38179342	109	0.1238	NEUTRAL	NA	16	"CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,ORMDL3,PGAP3,PNMT,PSMD3,STARD3,TCAP,ZPBP2"
TCGA.AA.3930.01A	17	37813203	37830177	18	-0.1835	NEUTRAL	NA	4	"PGAP3,PNMT,STARD3,TCAP"
TCGA.AA.3930.01A	17	37830811	38185954	95	0.2488	NEUTRAL	NA	13	"CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,ORMDL3,PGAP3,PSMD3,ZPBP2"
TCGA.AG.3906.01A	17	37886419	38032933	25	0.1449	NEUTRAL	NA	4	"GRB7,IKZF3,MIEN1,ZPBP2"
TCGA.AA.A01Q.01A	17	37898544	37902975	9	-0.2415	NEUTRAL	NA	1	GRB7
TCGA.AG.A016.01A	17	37898544	38233714	79	0.3479	NEUTRAL	NA	11	"CSF3,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,ORMDL3,PSMD3,THRA,ZPBP2"
TCGA.AG.3909.01A	17	37900766	37988280	12	0.2268	NEUTRAL	NA	2	"GRB7,IKZF3"
TCGA.CK.5914.01A	17	37902975	37985590	7	0.2951	NEUTRAL	NA	2	"GRB7,IKZF3"
TCGA.AH.6643	17	37921741	37976468	12	0.1357	NEUTRAL	NA	1	IKZF3
TCGA.AG.3898	17	37921741	81048658	11127	0.06	NEUTRAL	NA	631	Too-Many
TCGA.AA.A01Q.01A	17	37921991	38065960	20	0.2851	NEUTRAL	NA	3	"GSDMB,IKZF3,ZPBP2"
TCGA.AF.A56L	17	37931219	38303546	66	0.1353	NEUTRAL	NA	13	"CASC3,CSF3,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MSL1,NR1D1,ORMDL3,PSMD3,THRA,ZPBP2"
TCGA.AG.A01W.01A	17	37942904	37969944	13	0.2289	NEUTRAL	NA	1	IKZF3
TCGA.F5.6813	17	37948873	81048658	11153	0.0219	NEUTRAL	NA	631	Too-Many
TCGA.AG.A01W.01A	17	37972633	38065656	32	-0.2371	NEUTRAL	NA	3	"GSDMB,IKZF3,ZPBP2"
TCGA.AA.3517	17	38021651	41675444	733	0.0486	NEUTRAL	NA	147	Too-Many
TCGA.AA.3872	17	38040762	49567748	2375	0.3041	NEUTRAL	NA	296	Too-Many
TCGA.AA.A00N.01A	17	38061038	38126688	15	-0.3301	NEUTRAL	NA	4	"GSDMA,GSDMB,LRRC3C,ORMDL3"
TCGA.AG.3909.01A	17	38061038	38126688	14	0.0409	NEUTRAL	NA	4	"GSDMA,GSDMB,LRRC3C,ORMDL3"
TCGA.CK.5914.01A	17	38061038	38126688	15	0.2614	NEUTRAL	NA	4	"GSDMA,GSDMB,LRRC3C,ORMDL3"
TCGA.EI.6509	17	38062216	38066266	3	0.2528	NEUTRAL	NA	1	GSDMB
TCGA.AY.4070	17	38062216	75658848	9851	0.083	NEUTRAL	NA	528	Too-Many
TCGA.AA.A01Q.01A	17	38068530	38349864	79	-0.3349	NEUTRAL	NA	12	"CASC3,CSF3,GSDMA,GSDMB,LRRC3C,MED24,MSL1,NR1D1,ORMDL3,PSMD3,RAPGEFL1,THRA"
TCGA.AF.2692	17	38082830	38707124	80	-0.3666	NEUTRAL	NA	18	"CASC3,CDC6,CSF3,GJD3,GSDMA,IGFBP4,LRRC3C,MED24,MSL1,NR1D1,ORMDL3,PSMD3,RAPGEFL1,RARA,THRA,TNS4,TOP2A,WIPF2"
TCGA.D5.6929	17	38085384	38410063	41	0.1401	NEUTRAL	NA	11	"CASC3,CSF3,GSDMA,LRRC3C,MED24,MSL1,NR1D1,PSMD3,RAPGEFL1,THRA,WIPF2"
TCGA.AG.A01W.01A	17	38088307	38451172	136	-0.2304	NEUTRAL	NA	12	"CASC3,CDC6,CSF3,GSDMA,LRRC3C,MED24,MSL1,NR1D1,PSMD3,RAPGEFL1,THRA,WIPF2"
TCGA.AH.6643	17	38128764	38666239	58	0.2418	NEUTRAL	NA	16	"CASC3,CDC6,CSF3,GJD3,GSDMA,IGFBP4,MED24,MSL1,NR1D1,PSMD3,RAPGEFL1,RARA,THRA,TNS4,TOP2A,WIPF2"
TCGA.CK.5914.01A	17	38137197	38185032	21	-0.24	NEUTRAL	NA	3	"CSF3,MED24,PSMD3"
TCGA.AA.A00N.01A	17	38146005	38191110	24	-0.1793	NEUTRAL	NA	3	"CSF3,MED24,PSMD3"
TCGA.AG.3909.01A	17	38146005	38256251	43	0.066	NEUTRAL	NA	5	"CSF3,MED24,NR1D1,PSMD3,THRA"
TCGA.AG.A00C.01A	17	38171670	38256251	37	0.0051	NEUTRAL	NA	4	"CSF3,MED24,NR1D1,THRA"
TCGA.AA.3930.01A	17	38188850	68131187	3603	0.1718	NEUTRAL	NA	424	Too-Many
TCGA.AA.A00N.01A	17	38230672	38253291	15	0.0226	NEUTRAL	NA	2	"NR1D1,THRA"
TCGA.AG.3581	17	38231852	38457150	15	-0.367	NEUTRAL	NA	7	"CASC3,CDC6,MSL1,NR1D1,RAPGEFL1,THRA,WIPF2"
TCGA.AG.A016.01A	17	38240041	38282405	14	-0.2119	NEUTRAL	NA	3	"MSL1,NR1D1,THRA"
TCGA.AA.A02O	17	38253211	46725148	1681	-0.0072	NEUTRAL	NA	233	Too-Many
TCGA.AD.6888	17	38283198	81048658	11095	0.2502	NEUTRAL	NA	620	Too-Many
TCGA.CM.6165.01A	17	38296770	38318936	5	-0.5061	NEUTRAL	NA	1	CASC3
TCGA.AG.4009.01A	17	38296770	38325525	11	-0.0055	NEUTRAL	NA	1	CASC3
TCGA.CK.5914.01A	17	38296770	38519766	51	-0.5113	NEUTRAL	NA	6	"CASC3,CDC6,GJD3,RAPGEFL1,RARA,WIPF2"
TCGA.CM.6165.01A	17	38319797	81051974	5423	-0.0877	NEUTRAL	NA	619	Too-Many
TCGA.AA.A00D.01A	17	38323699	38786944	60	0.319	NEUTRAL	NA	11	"CASC3,CCR7,CDC6,GJD3,IGFBP4,RAPGEFL1,RARA,SMARCE1,TNS4,TOP2A,WIPF2"
TCGA.AA.A010.01A	17	38345079	38349864	9	-0.1253	NEUTRAL	NA	1	RAPGEFL1
TCGA.AG.A016.01A	17	38345079	38458108	26	0.1193	NEUTRAL	NA	3	"CDC6,RAPGEFL1,WIPF2"
TCGA.AG.A00C.01A	17	38412644	38450153	11	-0.0531	NEUTRAL	NA	2	"CDC6,WIPF2"
TCGA.AG.3902	17	38423478	49589261	2325	0.072	NEUTRAL	NA	284	Too-Many
TCGA.AA.A01Q.01A	17	38445651	38715071	37	-0.2349	NEUTRAL	NA	7	"CCR7,CDC6,GJD3,IGFBP4,RARA,TNS4,TOP2A"
TCGA.EI.6509	17	38447568	38979069	112	0.0868	NEUTRAL	NA	16	"CCR7,CDC6,GJD3,IGFBP4,KRT10,KRT222,KRT24,KRT25,KRT26,KRT27,KRT28,RARA,SMARCE1,TMEM99,TNS4,TOP2A"
TCGA.AA.3679	17	38447568	60151795	5274	-0.0074	NEUTRAL	NA	351	Too-Many
TCGA.AA.A010.01A	17	38449656	38487422	9	0.0078	NEUTRAL	NA	2	"CDC6,RARA"
TCGA.AG.3909.01A	17	38457028	38609215	40	-0.178	NEUTRAL	NA	5	"CDC6,GJD3,IGFBP4,RARA,TOP2A"
TCGA.AG.A01W.01A	17	38476451	38498579	7	-0.1288	NEUTRAL	NA	1	RARA
TCGA.AG.4009.01A	17	38498936	38545721	8	-0.1766	NEUTRAL	NA	3	"GJD3,RARA,TOP2A"
TCGA.AA.3875	17	38536982	81048658	11094	0.0756	NEUTRAL	NA	613	Too-Many
TCGA.CK.5914.01A	17	38545721	38560363	14	0.2581	NEUTRAL	NA	1	TOP2A
TCGA.AG.A016.01A	17	38547731	38572618	24	-0.2206	NEUTRAL	NA	1	TOP2A
TCGA.AG.A016.01A	17	38572945	39140072	111	0.3037	NEUTRAL	NA	18	"CCR7,IGFBP4,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,SMARCE1,TMEM99,TNS4,TOP2A"
TCGA.AA.A00N.01A	17	38573934	38609215	3	-0.0507	NEUTRAL	NA	2	"IGFBP4,TOP2A"
TCGA.AG.A00C.01A	17	38573934	38787816	23	-0.1479	NEUTRAL	NA	5	"CCR7,IGFBP4,SMARCE1,TNS4,TOP2A"
TCGA.CK.5914.01A	17	38573934	38798668	29	0.3344	NEUTRAL	NA	5	"CCR7,IGFBP4,SMARCE1,TNS4,TOP2A"
TCGA.AG.3725	17	38701753	54589619	4030	-0.5129	NEUTRAL	NA	288	Too-Many
TCGA.AA.3850	17	38702441	39307674	236	0.11115	NEUTRAL	NA	33	"CCR7,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-11,KRTAP4-12,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,SMARCE1,TMEM99"
TCGA.AG.A01W.01A	17	38703973	38956496	36	-0.1509	NEUTRAL	NA	8	"CCR7,KRT222,KRT24,KRT25,KRT26,KRT27,KRT28,SMARCE1"
TCGA.AF.2692	17	38711221	39680795	371	0.0037	NEUTRAL	NA	60	"CCR7,KRT10,KRT12,KRT13,KRT15,KRT19,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,SMARCE1,TMEM99"
TCGA.AA.A01Q.01A	17	38721568	39122619	84	0.2302	NEUTRAL	NA	14	"CCR7,KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,SMARCE1,TMEM99"
TCGA.AZ.6600	17	38736230	81048658	11048	-0.2839	NEUTRAL	NA	609	Too-Many
TCGA.AG.3883	17	38770285	70140484	8056	0.0578	NEUTRAL	NA	412	Too-Many
TCGA.AA.3811	17	38779087	39215185	175	-0.157	NEUTRAL	NA	23	"KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP3-1,KRTAP3-2,KRTAP3-3,SMARCE1,TMEM99"
TCGA.AG.3909.01A	17	38784985	38793684	8	-0.1078	NEUTRAL	NA	1	SMARCE1
TCGA.AA.A010.01A	17	38784985	38798668	9	-0.2241	NEUTRAL	NA	1	SMARCE1
TCGA.AG.3906.01A	17	38786944	39240612	101	0.0635	NEUTRAL	NA	26	"KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-7,SMARCE1,TMEM99"
TCGA.AG.3909.01A	17	38798668	38821213	8	-0.5085	NEUTRAL	NA	2	"KRT222,SMARCE1"
TCGA.AA.A00N.01A	17	38816187	38854447	4	-0.2536	NEUTRAL	NA	2	"KRT222,KRT24"
TCGA.AA.A00D.01A	17	38816187	39340627	90	0.2314	NEUTRAL	NA	35	"KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,TMEM99"
TCGA.AF.A56L	17	38816525	39110919	99	0.1486	NEUTRAL	NA	11	"KRT10,KRT12,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,TMEM99"
TCGA.CK.5914.01A	17	38818117	38859324	9	0.1467	NEUTRAL	NA	2	"KRT222,KRT24"
TCGA.AG.A00C.01A	17	38821213	38938395	29	-0.117	NEUTRAL	NA	5	"KRT222,KRT24,KRT25,KRT26,KRT27"
TCGA.AH.6643	17	38831414	52338896	3141	0.0811	NEUTRAL	NA	277	Too-Many
TCGA.AG.3891.01A	17	38855654	39155759	76	-0.0444	NEUTRAL	NA	14	"KRT10,KRT12,KRT20,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT39,KRT40,KRTAP3-2,KRTAP3-3,TMEM99"
TCGA.AA.A00A.01A	17	38855654	39644456	143	0.1386	NEUTRAL	NA	54	"KRT10,KRT12,KRT20,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,TMEM99"
TCGA.CK.5914.01A	17	38922735	38927905	7	0.0449	NEUTRAL	NA	1	KRT26
TCGA.AA.A00N.01A	17	38922735	38955748	20	-0.0943	NEUTRAL	NA	3	"KRT26,KRT27,KRT28"
TCGA.AG.3909.01A	17	38923771	38991757	28	-0.4503	NEUTRAL	NA	5	"KRT10,KRT26,KRT27,KRT28,TMEM99"
TCGA.AA.A00O.01A	17	38935717	62020148	2560	-0.1779	NEUTRAL	NA	365	Too-Many
TCGA.AG.3611.01A	17	38936515	39036035	26	0.012	NEUTRAL	NA	6	"KRT10,KRT12,KRT20,KRT27,KRT28,TMEM99"
TCGA.DM.A1D0	17	38950932	39035572	19	0.273	NEUTRAL	NA	5	"KRT10,KRT12,KRT20,KRT28,TMEM99"
TCGA.AA.A01F.01A	17	38953139	38955134	3	-0.0058	NEUTRAL	NA	1	KRT28
TCGA.AG.4009.01A	17	38955748	38990737	7	-0.2514	NEUTRAL	NA	3	"KRT10,KRT28,TMEM99"
TCGA.AA.A01F.01A	17	38955748	41369683	573	0.374	NEUTRAL	NA	117	Too-Many
TCGA.AG.4009.01A	17	38991462	39458029	78	0.2661	NEUTRAL	NA	36	"KRT12,KRT20,KRT23,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,TMEM99"
TCGA.AG.A00C.01A	17	39019367	39658574	131	-0.2415	NEUTRAL	NA	48	"KRT12,KRT13,KRT20,KRT23,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AA.A00N.01A	17	39032576	39087584	13	0.0485	NEUTRAL	NA	2	"KRT20,KRT23"
TCGA.CK.5914.01A	17	39032576	39087584	13	-0.1326	NEUTRAL	NA	2	"KRT20,KRT23"
TCGA.AG.3611.01A	17	39036858	40880796	431	0.3419	NEUTRAL	NA	92	"ACLY,ATP6V0A1,CCR10,CNP,CNTNAP1,COASY,DHX58,DNAJC7,EIF1,EZH1,FAM134C,FKBP10,GAST,GHDC,HAP1,HCRT,HSD17B1,HSPB9,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT20,KRT23,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT39,KRT40,KRT9,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,MLX,NAGLU,NKIRAS2,NT5C3B,P3H4,PLEKHH3,PSMC3IP,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TTC25,TUBG1,TUBG2,ZNF385C"
TCGA.AG.A01W.01A	17	39093939	39249505	16	0.259	NEUTRAL	NA	14	"KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-7"
TCGA.DM.A1D0	17	39122796	39132239	11	0.0528	NEUTRAL	NA	1	KRT39
TCGA.AG.A016.01A	17	39150015	39421595	41	-0.0758	NEUTRAL	NA	28	"KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-8,KRTAP9-9"
TCGA.AG.3891.01A	17	39164981	39463935	43	-0.3954	NEUTRAL	NA	29	"KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.DM.A1D0	17	39210142	40425319	284	0.2952	NEUTRAL	NA	64	"ACLY,CNP,DHX58,DNAJC7,EIF1,FKBP10,GAST,GHDC,HAP1,HCRT,HSPB9,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP16-1,KRTAP17-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,NKIRAS2,NT5C3B,P3H4,RAB5C,STAT5B,TTC25,ZNF385C"
TCGA.AA.3994	17	39215185	43340630	789	0.0127	NEUTRAL	NA	150	Too-Many
TCGA.AA.A010.01A	17	39216324	39280341	15	0.001	NEUTRAL	NA	7	"KRTAP2-3,KRTAP2-4,KRTAP4-11,KRTAP4-12,KRTAP4-7,KRTAP4-8,KRTAP4-9"
TCGA.AA.3941	17	39217596	39441218	72	-0.4089	NEUTRAL	NA	20	"KRTAP2-4,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AA.3811	17	39218969	39441218	68	-0.3762	NEUTRAL	NA	20	"KRTAP2-4,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AA.3864	17	39219582	81048658	10833	0.1271	NEUTRAL	NA	585	Too-Many
TCGA.AA.3862.01A	17	39240407	40049248	197	0.0409	NEUTRAL	NA	48	"ACLY,EIF1,FKBP10,GAST,HAP1,JUP,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,NT5C3B,P3H4"
TCGA.AG.3906.01A	17	39240907	39262252	7	-0.4865	NEUTRAL	NA	3	"KRTAP4-7,KRTAP4-8,KRTAP4-9"
TCGA.AG.A01W.01A	17	39262511	39445885	34	0.2689	NEUTRAL	NA	17	"KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AG.3906.01A	17	39274473	39551450	48	-0.0184	NEUTRAL	NA	23	"KRT31,KRT33A,KRT33B,KRT34,KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AF.A56N	17	39282528	44162283	954	0.0929	NEUTRAL	NA	151	Too-Many
TCGA.AG.3742	17	39297636	81048658	10735	-0.0602	NEUTRAL	NA	578	Too-Many
TCGA.AA.3850	17	39320135	39763272	150	0.18555	NEUTRAL	NA	28	"KRT13,KRT14,KRT15,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP4-1,KRTAP4-2,KRTAP4-3,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AA.A00Q.01A	17	39340627	42981171	772	0.1836	NEUTRAL	NA	126	Too-Many
TCGA.AA.A00D.01A	17	39346087	39463935	11	-0.2493	NEUTRAL	NA	9	"KRTAP29-1,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.CK.5914.01A	17	39346087	39845240	111	0.1106	NEUTRAL	NA	28	"EIF1,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AA.3529	17	39373040	44180953	934	0.0299	NEUTRAL	NA	144	Too-Many
TCGA.AA.A01Q.01A	17	39388703	39642577	57	0.3435	NEUTRAL	NA	18	"KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AZ.4684.01A	17	39432231	45198265	1116	-0.1578	NEUTRAL	NA	148	Too-Many
TCGA.AA.3509.01A	17	39432231	53037856	1852	-0.0801	NEUTRAL	NA	237	Too-Many
TCGA.AA.3811	17	39444028	39598182	56	0.1173	NEUTRAL	NA	9	"KRT31,KRT33A,KRT33B,KRT34,KRT37,KRT38,KRTAP16-1,KRTAP17-1,KRTAP29-1"
TCGA.AA.3941	17	39444028	44110270	890	0.1669	NEUTRAL	NA	137	Too-Many
TCGA.AA.3968	17	39444406	39643859	91	0.0464	NEUTRAL	NA	12	"KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRTAP16-1,KRTAP17-1,KRTAP29-1"
TCGA.AG.A01W.01A	17	39447235	39604933	42	-0.3957	NEUTRAL	NA	9	"KRT31,KRT33A,KRT33B,KRT34,KRT37,KRT38,KRTAP16-1,KRTAP17-1,KRTAP29-1"
TCGA.AG.3891.01A	17	39471603	39643195	50	-0.0832	NEUTRAL	NA	10	"KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRTAP17-1"
TCGA.AG.A016.01A	17	39502353	39525647	12	0.2438	NEUTRAL	NA	2	"KRT33A,KRT33B"
TCGA.AA.A00N.01A	17	39502353	39553396	23	-0.1149	NEUTRAL	NA	4	"KRT31,KRT33A,KRT33B,KRT34"
TCGA.AG.A016.01A	17	39534253	39551450	8	-0.1977	NEUTRAL	NA	2	"KRT31,KRT34"
TCGA.AG.A016.01A	17	39552630	42338876	688	0.2751	NEUTRAL	NA	96	"AARSD1,ACLY,AOC2,AOC3,ARL4D,ASB16,ATP6V0A1,ATXN7L3,BECN1,BRCA1,C17orf105,C17orf53,CCR10,CD300LG,CNP,CNTD1,CNTNAP1,COA3,COASY,DHX58,DHX8,DNAJC7,DUSP3,EIF1,ETV4,EZH1,FAM134C,FKBP10,G6PC,G6PC3,GAST,GHDC,HAP1,HCRT,HDAC5,HSD17B1,HSPB9,IFI35,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT35,KRT36,KRT37,KRT38,KRT9,LSM12,MEOX1,MLX,MPP2,MPP3,NAGLU,NAGS,NBR1,NKIRAS2,NT5C3B,P3H4,PLEKHH3,PPY,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PTRF,PYY,RAB5C,RAMP2,RND2,RPL27,RUNDC1,SLC4A1,SOST,STAT3,STAT5A,STAT5B,TMEM101,TMEM106A,TMUB2,TTC25,TUBG1,TUBG2,UBTF,VAT1,VPS25,WNK4,ZNF385C"
TCGA.AG.3906.01A	17	39577082	39884473	77	0.2816	NEUTRAL	NA	15	"EIF1,GAST,HAP1,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT32,KRT35,KRT36,KRT37,KRT38,KRT9"
TCGA.AA.3811	17	39598322	39614954	14	-0.4033	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	39609556	39611071	3	0.2983	NEUTRAL	NA	0	None
TCGA.AA.3811	17	39615140	44115885	828	0.2067	NEUTRAL	NA	128	Too-Many
TCGA.AG.A01W.01A	17	39620575	39628622	7	-0.119	NEUTRAL	NA	1	KRT32
TCGA.AG.A01W.01A	17	39629200	39651015	16	0.3072	NEUTRAL	NA	2	"KRT35,KRT36"
TCGA.AG.3909.01A	17	39633738	39679958	25	0.1775	NEUTRAL	NA	5	"KRT13,KRT15,KRT19,KRT35,KRT36"
TCGA.AA.A00N.01A	17	39635039	39658574	14	0.3513	NEUTRAL	NA	3	"KRT13,KRT35,KRT36"
TCGA.AA.A01Q.01A	17	39643195	39726072	26	-0.4269	NEUTRAL	NA	5	"KRT13,KRT15,KRT19,KRT36,KRT9"
TCGA.AG.3891.01A	17	39643621	41908897	567	0.3657	NEUTRAL	NA	76	"AARSD1,ACLY,AOC2,AOC3,ARL4D,ATP6V0A1,BECN1,BRCA1,C17orf105,CCR10,CNP,CNTD1,CNTNAP1,COA3,COASY,DHX58,DHX8,DNAJC7,DUSP3,EIF1,ETV4,EZH1,FAM134C,FKBP10,G6PC,GAST,GHDC,HAP1,HCRT,HSD17B1,HSPB9,IFI35,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT36,KRT9,MEOX1,MLX,MPP3,NAGLU,NBR1,NKIRAS2,NT5C3B,P3H4,PLEKHH3,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PTRF,RAB5C,RAMP2,RND2,RPL27,RUNDC1,SOST,STAT3,STAT5A,STAT5B,TMEM106A,TTC25,TUBG1,TUBG2,VAT1,VPS25,WNK4,ZNF385C"
TCGA.AA.A00A.01A	17	39644839	40178866	114	0.3465	NEUTRAL	NA	23	"ACLY,CNP,DNAJC7,EIF1,FKBP10,GAST,HAP1,JUP,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT36,KRT9,NKIRAS2,NT5C3B,P3H4,TTC25,ZNF385C"
TCGA.AG.A00C.01A	17	39659499	40673005	263	0.2775	NEUTRAL	NA	34	"ACLY,ATP6V0A1,CNP,DHX58,DNAJC7,EIF1,FKBP10,GAST,GHDC,HAP1,HCRT,HSPB9,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT9,NKIRAS2,NT5C3B,P3H4,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TTC25,ZNF385C"
TCGA.AF.2692	17	39680934	42332802	430	-0.262	NEUTRAL	NA	88	"AARSD1,ACLY,AOC2,AOC3,ARL4D,ASB16,ATP6V0A1,ATXN7L3,BECN1,BRCA1,C17orf105,C17orf53,CCR10,CD300LG,CNP,CNTD1,CNTNAP1,COA3,COASY,DHX58,DHX8,DNAJC7,DUSP3,EIF1,ETV4,EZH1,FAM134C,FKBP10,G6PC,G6PC3,GAST,GHDC,HAP1,HCRT,HDAC5,HSD17B1,HSPB9,IFI35,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT14,KRT16,KRT17,KRT19,KRT9,LSM12,MEOX1,MLX,MPP2,MPP3,NAGLU,NAGS,NBR1,NKIRAS2,NT5C3B,P3H4,PLEKHH3,PPY,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PTRF,PYY,RAB5C,RAMP2,RND2,RPL27,RUNDC1,SLC4A1,SOST,STAT3,STAT5A,STAT5B,TMEM101,TMEM106A,TMUB2,TTC25,TUBG1,TUBG2,UBTF,VAT1,VPS25,WNK4,ZNF385C"
TCGA.AG.A01W.01A	17	39683291	39694403	13	-0.3258	NEUTRAL	NA	1	KRT19
TCGA.AG.A01W.01A	17	39695498	39753479	11	0.1641	NEUTRAL	NA	2	"KRT14,KRT9"
TCGA.AA.A01Q.01A	17	39727555	39778555	15	0.1616	NEUTRAL	NA	4	"KRT14,KRT16,KRT17,KRT9"
TCGA.A6.5660	17	39765485	44162596	790	0.2069	NEUTRAL	NA	120	Too-Many
TCGA.AF.3914.01A	17	39766137	40021051	63	-0.2877	NEUTRAL	NA	11	"EIF1,FKBP10,GAST,HAP1,JUP,KLHL10,KLHL11,KRT16,KRT17,NT5C3B,P3H4"
TCGA.AA.A01Q.01A	17	39779143	40318333	123	-0.3192	NEUTRAL	NA	21	"ACLY,CNP,DHX58,DNAJC7,EIF1,FKBP10,GAST,HAP1,HSPB9,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT17,NKIRAS2,NT5C3B,P3H4,RAB5C,TTC25,ZNF385C"
TCGA.AG.A01W.01A	17	39792418	39808459	7	-0.2446	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	39811247	40670374	162	-0.1118	NEUTRAL	NA	27	"ACLY,ATP6V0A1,CNP,DHX58,DNAJC7,EIF1,FKBP10,GAST,GHDC,HAP1,HCRT,HSPB9,JUP,KAT2A,KCNH4,KLHL10,KLHL11,NKIRAS2,NT5C3B,P3H4,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TTC25,ZNF385C"
TCGA.A6.3808.01A	17	39845240	39975430	37	0.1584	NEUTRAL	NA	6	"EIF1,FKBP10,GAST,HAP1,JUP,P3H4"
TCGA.AF.A56L	17	39865755	45852353	1029	-0.1244	NEUTRAL	NA	134	Too-Many
TCGA.AG.3909.01A	17	39871642	39981725	37	-0.032	NEUTRAL	NA	6	"FKBP10,GAST,HAP1,JUP,NT5C3B,P3H4"
TCGA.CK.5914.01A	17	39871642	39981725	40	-0.3654	NEUTRAL	NA	6	"FKBP10,GAST,HAP1,JUP,NT5C3B,P3H4"
TCGA.AA.A02R.01A	17	39883963	81051974	3785	-0.0978	NEUTRAL	NA	544	Too-Many
TCGA.AG.4015	17	39897263	81048658	10616	0.0371	NEUTRAL	NA	543	Too-Many
TCGA.AA.3867	17	39898685	50032766	2089	0.3482	NEUTRAL	NA	211	Too-Many
TCGA.AA.3870	17	39907732	44153521	768	0.1861	NEUTRAL	NA	115	Too-Many
TCGA.AA.3975	17	39907732	48019577	1493	0.1003	NEUTRAL	NA	179	Too-Many
TCGA.AA.3866	17	39907732	81048658	10642	0.1297	NEUTRAL	NA	543	Too-Many
TCGA.AA.3952	17	39907732	81048658	10644	0.0607	NEUTRAL	NA	543	Too-Many
TCGA.AG.4009.01A	17	39925643	39975430	12	0.0857	NEUTRAL	NA	3	"FKBP10,JUP,P3H4"
TCGA.AA.A010.01A	17	39927847	40057912	50	-0.3422	NEUTRAL	NA	7	"ACLY,FKBP10,JUP,KLHL10,KLHL11,NT5C3B,P3H4"
TCGA.D5.6929	17	39949515	58322728	4521	0.1498	NEUTRAL	NA	266	Too-Many
TCGA.AG.3727	17	39949515	81048658	10650	0.0586	NEUTRAL	NA	542	Too-Many
TCGA.AA.A00N.01A	17	39959134	39981725	17	-0.3948	NEUTRAL	NA	3	"FKBP10,NT5C3B,P3H4"
TCGA.AG.4009.01A	17	39976494	40039348	26	-0.3777	NEUTRAL	NA	5	"ACLY,FKBP10,KLHL10,KLHL11,NT5C3B"
TCGA.A6.3808.01A	17	40025680	40914664	295	-0.1412	NEUTRAL	NA	31	"ACLY,ATP6V0A1,CCR10,CNP,CNTNAP1,COASY,DHX58,DNAJC7,EZH1,FAM134C,GHDC,HCRT,HSD17B1,HSPB9,KAT2A,KCNH4,MLX,NAGLU,NKIRAS2,PLEKHH3,PSMC3IP,PTRF,RAB5C,RAMP2,STAT3,STAT5A,STAT5B,TTC25,TUBG1,TUBG2,ZNF385C"
TCGA.AG.3909.01A	17	40027905	40169308	52	-0.0535	NEUTRAL	NA	4	"ACLY,CNP,DNAJC7,TTC25"
TCGA.AA.A01I.01A	17	40030014	66511499	2745	-0.2547	NEUTRAL	NA	330	Too-Many
TCGA.CK.5914.01A	17	40042317	40475536	146	-0.2761	NEUTRAL	NA	16	"ACLY,CNP,DHX58,DNAJC7,GHDC,HCRT,HSPB9,KAT2A,KCNH4,NKIRAS2,RAB5C,STAT3,STAT5A,STAT5B,TTC25,ZNF385C"
TCGA.AF.3914.01A	17	40042317	40880796	270	-0.3035	NEUTRAL	NA	30	"ACLY,ATP6V0A1,CCR10,CNP,CNTNAP1,COASY,DHX58,DNAJC7,EZH1,FAM134C,GHDC,HCRT,HSD17B1,HSPB9,KAT2A,KCNH4,MLX,NAGLU,NKIRAS2,PLEKHH3,PSMC3IP,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TTC25,TUBG1,TUBG2,ZNF385C"
TCGA.AA.A010.01A	17	40133822	40180749	19	-0.2694	NEUTRAL	NA	3	"DNAJC7,NKIRAS2,ZNF385C"
TCGA.AA.A01Z	17	40155466	41341983	145	0.0391	NEUTRAL	NA	47	"AARSD1,AOC2,AOC3,ATP6V0A1,BECN1,BRCA1,CCR10,CNTD1,CNTNAP1,COA3,COASY,DHX58,DNAJC7,EZH1,FAM134C,G6PC,GHDC,HCRT,HSD17B1,HSPB9,IFI35,KAT2A,KCNH4,MLX,NAGLU,NBR1,NKIRAS2,PLEKHH3,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PTRF,RAB5C,RAMP2,RND2,RPL27,RUNDC1,STAT3,STAT5A,STAT5B,TUBG1,TUBG2,VAT1,VPS25,WNK4,ZNF385C"
TCGA.AA.A00A.01A	17	40179588	40261236	11	-0.0147	NEUTRAL	NA	2	"DHX58,ZNF385C"
TCGA.AG.4009.01A	17	40253731	40262701	9	-0.2278	NEUTRAL	NA	1	DHX58
TCGA.AA.A010.01A	17	40255596	40315612	31	0.2432	NEUTRAL	NA	5	"DHX58,HSPB9,KAT2A,KCNH4,RAB5C"
TCGA.AG.4009.01A	17	40263276	40270298	9	0.3194	NEUTRAL	NA	2	"DHX58,KAT2A"
TCGA.AA.A02E.01A	17	40270298	40717216	110	-0.3136	NEUTRAL	NA	14	"ATP6V0A1,COASY,GHDC,HCRT,HSD17B1,HSPB9,KAT2A,KCNH4,NAGLU,PTRF,RAB5C,STAT3,STAT5A,STAT5B"
TCGA.AA.3862.01A	17	40315612	40824053	144	0.1661	NEUTRAL	NA	17	"ATP6V0A1,COASY,FAM134C,GHDC,HCRT,HSD17B1,KCNH4,MLX,NAGLU,PLEKHH3,PSMC3IP,PTRF,STAT3,STAT5A,STAT5B,TUBG1,TUBG2"
TCGA.AA.A010.01A	17	40316067	40370121	28	-0.2601	NEUTRAL	NA	4	"GHDC,HCRT,KCNH4,STAT5B"
TCGA.AG.4009.01A	17	40322075	40323765	2	0.1111	NEUTRAL	NA	1	KCNH4
TCGA.AG.4009.01A	17	40327555	40344927	11	-0.1912	NEUTRAL	NA	3	"GHDC,HCRT,KCNH4"
TCGA.AA.A01Q.01A	17	40342610	40666260	72	0.0166	NEUTRAL	NA	6	"ATP6V0A1,GHDC,PTRF,STAT3,STAT5A,STAT5B"
TCGA.AG.4009.01A	17	40345308	40673005	71	0.3374	NEUTRAL	NA	6	"ATP6V0A1,GHDC,PTRF,STAT3,STAT5A,STAT5B"
TCGA.AA.A010.01A	17	40375353	40653204	55	-0.1221	NEUTRAL	NA	5	"ATP6V0A1,PTRF,STAT3,STAT5A,STAT5B"
TCGA.CA.6719	17	40461673	81048658	10552	-0.0254	NEUTRAL	NA	523	Too-Many
TCGA.AA.3524	17	40656042	44213203	679	-0.0396	NEUTRAL	NA	92	"AARSD1,ACBD4,ADAM11,AOC2,AOC3,ARHGAP27,ARL4D,ASB16,ATP6V0A1,ATXN7L3,BECN1,BRCA1,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CCR10,CD300LG,CNTD1,CNTNAP1,COA3,COASY,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,EZH1,FAM134C,FAM171A2,FMNL1,FZD2,G6PC,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,HSD17B1,IFI35,ITGA2B,KANSL1,KIF18B,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MLX,MPP2,MPP3,NAGLU,NAGS,NBR1,NMT1,PLCD3,PLEKHH3,PLEKHM1,PPY,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PYY,RAMP2,RND2,RPL27,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,SPPL2C,STH,TMEM101,TMEM106A,TMUB2,TUBG1,TUBG2,UBTF,VAT1,VPS25,WNK4"
TCGA.CK.5914.01A	17	40673005	40720838	18	-0.4734	NEUTRAL	NA	5	"ATP6V0A1,COASY,HSD17B1,MLX,NAGLU"
TCGA.AG.A01W.01A	17	40687519	64037610	2156	-0.084	NEUTRAL	NA	295	Too-Many
TCGA.AG.4009.01A	17	40689377	40695038	5	-0.5102	NEUTRAL	NA	1	NAGLU
TCGA.AG.A00C.01A	17	40692918	42266353	351	0.1459	NEUTRAL	NA	53	"AARSD1,AOC2,AOC3,ARL4D,ASB16,BECN1,BRCA1,C17orf105,C17orf53,CCR10,CD300LG,CNTD1,CNTNAP1,COA3,COASY,DHX8,DUSP3,ETV4,EZH1,FAM134C,G6PC,G6PC3,HDAC5,HSD17B1,IFI35,LSM12,MEOX1,MLX,MPP2,MPP3,NAGLU,NAGS,NBR1,PLEKHH3,PPY,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PYY,RAMP2,RND2,RPL27,RUNDC1,SOST,TMEM101,TMEM106A,TMUB2,TUBG1,TUBG2,VAT1,VPS25,WNK4"
TCGA.AA.A01D.01A	17	40692918	81006295	3550	-0.4277	NEUTRAL	NA	518	Too-Many
TCGA.AA.A010.01A	17	40705405	40744032	27	-0.2808	NEUTRAL	NA	5	"COASY,FAM134C,HSD17B1,MLX,PSMC3IP"
TCGA.CK.5914.01A	17	40729186	40849555	59	-0.3249	NEUTRAL	NA	7	"CCR10,CNTNAP1,FAM134C,PLEKHH3,PSMC3IP,TUBG1,TUBG2"
TCGA.AA.A01Q.01A	17	40729186	40925704	83	-0.038	NEUTRAL	NA	10	"CCR10,CNTNAP1,EZH1,FAM134C,PLEKHH3,PSMC3IP,RAMP2,TUBG1,TUBG2,VPS25"
TCGA.AG.A025.01A	17	40729186	73015726	3037	-0.1957	NEUTRAL	NA	354	Too-Many
TCGA.F4.6704	17	40791177	41036278	20	-0.431	NEUTRAL	NA	14	"AOC2,AOC3,BECN1,CCR10,CNTD1,CNTNAP1,COA3,EZH1,PLEKHH3,PSME3,RAMP2,TUBG2,VPS25,WNK4"
TCGA.CM.6166	17	40797460	42934693	352	-0.0131	NEUTRAL	NA	63	"AARSD1,ADAM11,AOC2,AOC3,ARL4D,ASB16,ATXN7L3,BECN1,BRCA1,C17orf104,C17orf105,C17orf53,CCDC43,CCR10,CD300LG,CNTD1,CNTNAP1,COA3,DBF4B,DHX8,DUSP3,EFTUD2,ETV4,EZH1,FAM171A2,FZD2,G6PC,G6PC3,GJC1,GPATCH8,GRN,HDAC5,HIGD1B,IFI35,ITGA2B,LSM12,MEOX1,MPP2,MPP3,NAGS,NBR1,PLEKHH3,PPY,PSME3,PTGES3L,PTGES3L-AARSD1,PYY,RAMP2,RND2,RPL27,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,TMEM101,TMEM106A,TMUB2,TUBG2,UBTF,VAT1,VPS25,WNK4"
TCGA.CA.5254	17	40808068	44144213	643	-0.0375	NEUTRAL	NA	84	"AARSD1,ACBD4,ADAM11,AOC2,AOC3,ARHGAP27,ARL4D,ASB16,ATXN7L3,BECN1,BRCA1,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CCR10,CD300LG,CNTD1,CNTNAP1,COA3,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,EZH1,FAM171A2,FMNL1,FZD2,G6PC,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,IFI35,ITGA2B,KANSL1,KIF18B,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MPP2,MPP3,NAGS,NBR1,NMT1,PLCD3,PLEKHH3,PLEKHM1,PPY,PSME3,PTGES3L,PTGES3L-AARSD1,PYY,RAMP2,RND2,RPL27,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,SPPL2C,STH,TMEM101,TMEM106A,TMUB2,TUBG2,UBTF,VAT1,VPS25,WNK4"
TCGA.AG.4009.01A	17	40812206	40837925	19	-0.2749	NEUTRAL	NA	4	"CCR10,CNTNAP1,PLEKHH3,TUBG2"
TCGA.AA.A00L.01A	17	40817438	40836977	16	0.3035	NEUTRAL	NA	4	"CCR10,CNTNAP1,PLEKHH3,TUBG2"
TCGA.AA.A02E.01A	17	40817438	41199601	136	-0.2728	NEUTRAL	NA	24	"AARSD1,AOC2,AOC3,BECN1,BRCA1,CCR10,CNTD1,CNTNAP1,COA3,EZH1,G6PC,IFI35,PLEKHH3,PSME3,PTGES3L,PTGES3L-AARSD1,RAMP2,RND2,RPL27,RUNDC1,TUBG2,VAT1,VPS25,WNK4"
TCGA.AA.A02K.01A	17	40824054	40831545	6	-0.2206	NEUTRAL	NA	2	"CCR10,PLEKHH3"
TCGA.AA.3862.01A	17	40825167	43517474	607	-0.3256	NEUTRAL	NA	77	"AARSD1,ACBD4,ADAM11,AOC2,AOC3,ARHGAP27,ARL4D,ASB16,ATXN7L3,BECN1,BRCA1,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CCR10,CD300LG,CNTD1,CNTNAP1,COA3,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,EZH1,FAM171A2,FMNL1,FZD2,G6PC,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,IFI35,ITGA2B,KIF18B,LSM12,MAP3K14,MEOX1,MPP2,MPP3,NAGS,NBR1,NMT1,PLCD3,PLEKHH3,PLEKHM1,PPY,PSME3,PTGES3L,PTGES3L-AARSD1,PYY,RAMP2,RND2,RPL27,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,TMEM101,TMEM106A,TMUB2,UBTF,VAT1,VPS25,WNK4"
TCGA.AG.4009.01A	17	40838872	40913788	36	0.3516	NEUTRAL	NA	3	"CNTNAP1,EZH1,RAMP2"
TCGA.AG.3909.01A	17	40847527	40913788	25	-0.0526	NEUTRAL	NA	3	"CNTNAP1,EZH1,RAMP2"
TCGA.AA.A010.01A	17	40871073	40925704	11	-0.3253	NEUTRAL	NA	3	"EZH1,RAMP2,VPS25"
TCGA.AG.3611.01A	17	40913788	42397952	267	-0.313	NEUTRAL	NA	46	"AARSD1,AOC2,AOC3,ARL4D,ASB16,ATXN7L3,BECN1,BRCA1,C17orf105,C17orf53,CD300LG,CNTD1,COA3,DHX8,DUSP3,ETV4,G6PC,G6PC3,HDAC5,IFI35,LSM12,MEOX1,MPP2,MPP3,NAGS,NBR1,PPY,PSME3,PTGES3L,PTGES3L-AARSD1,PYY,RAMP2,RND2,RPL27,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,TMEM101,TMEM106A,TMUB2,UBTF,VAT1,VPS25,WNK4"
TCGA.AA.A00N.01A	17	40930928	40993454	40	-0.2837	NEUTRAL	NA	6	"BECN1,CNTD1,COA3,PSME3,VPS25,WNK4"
TCGA.AA.A010.01A	17	40932708	40972738	31	-0.1519	NEUTRAL	NA	4	"BECN1,CNTD1,COA3,WNK4"
TCGA.AA.A01Q.01A	17	40934739	41052856	47	-0.286	NEUTRAL	NA	8	"AOC2,AOC3,BECN1,CNTD1,COA3,G6PC,PSME3,WNK4"
TCGA.AG.4009.01A	17	40945560	40951068	7	-0.1137	NEUTRAL	NA	3	"CNTD1,COA3,WNK4"
TCGA.AF.3914.01A	17	40945560	41106850	47	-0.1162	NEUTRAL	NA	10	"AARSD1,AOC2,AOC3,BECN1,CNTD1,COA3,G6PC,PSME3,PTGES3L-AARSD1,WNK4"
TCGA.AG.4009.01A	17	40955574	40972738	15	0.3618	NEUTRAL	NA	2	"BECN1,CNTD1"
TCGA.AG.3909.01A	17	40967878	40985568	7	0.1726	NEUTRAL	NA	2	"BECN1,PSME3"
TCGA.AA.A00Z.01A	17	41003311	56572302	22	-0.3097	NEUTRAL	NA	202	Too-Many
TCGA.CK.5914.01A	17	41006418	41103763	10	0.2589	NEUTRAL	NA	4	"AARSD1,AOC3,G6PC,PTGES3L-AARSD1"
TCGA.AA.A01Q.01A	17	41055937	41116367	14	0.2622	NEUTRAL	NA	3	"AARSD1,G6PC,PTGES3L-AARSD1"
TCGA.AA.3869	17	41056244	42423664	261	0.0064	NEUTRAL	NA	38	"AARSD1,ARL4D,ASB16,ATXN7L3,BRCA1,C17orf105,C17orf53,CD300LG,DHX8,DUSP3,ETV4,G6PC,G6PC3,GRN,HDAC5,IFI35,LSM12,MEOX1,MPP2,MPP3,NAGS,NBR1,PPY,PTGES3L,PTGES3L-AARSD1,PYY,RND2,RPL27,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,TMEM101,TMEM106A,TMUB2,UBTF,VAT1"
TCGA.AA.A010.01A	17	41102560	41132546	16	-0.2445	NEUTRAL	NA	3	"AARSD1,PTGES3L,PTGES3L-AARSD1"
TCGA.AA.A00N.01A	17	41103763	41116367	9	-0.0513	NEUTRAL	NA	2	"AARSD1,PTGES3L-AARSD1"
TCGA.A6.3808.01A	17	41103763	44249094	568	-0.0243	NEUTRAL	NA	69	"AARSD1,ACBD4,ADAM11,ARHGAP27,ARL4D,ASB16,ATXN7L3,BRCA1,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CD300LG,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,FAM171A2,FMNL1,FZD2,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,IFI35,ITGA2B,KANSL1,KIF18B,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MPP2,MPP3,NAGS,NBR1,NMT1,PLCD3,PLEKHM1,PPY,PTGES3L,PTGES3L-AARSD1,PYY,RND2,RPL27,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,SPPL2C,STH,TMEM101,TMEM106A,TMUB2,UBTF,VAT1"
TCGA.CK.5914.01A	17	41105681	41180029	34	-0.3935	NEUTRAL	NA	8	"AARSD1,IFI35,PTGES3L,PTGES3L-AARSD1,RND2,RPL27,RUNDC1,VAT1"
TCGA.AG.3909.01A	17	41122246	41154643	11	-0.4357	NEUTRAL	NA	4	"PTGES3L,PTGES3L-AARSD1,RPL27,RUNDC1"
TCGA.AA.A01Q.01A	17	41122246	41180407	25	-0.3254	NEUTRAL	NA	7	"IFI35,PTGES3L,PTGES3L-AARSD1,RND2,RPL27,RUNDC1,VAT1"
TCGA.AG.4009.01A	17	41142286	41168404	10	-0.0036	NEUTRAL	NA	4	"IFI35,RPL27,RUNDC1,VAT1"
TCGA.AG.4009.01A	17	41169836	41180407	6	-0.3478	NEUTRAL	NA	2	"RND2,VAT1"
TCGA.CK.5914.01A	17	41180407	41256149	19	0.3437	NEUTRAL	NA	2	"BRCA1,RND2"
TCGA.AA.A00N.01A	17	41197645	41256149	18	0.1764	NEUTRAL	NA	1	BRCA1
TCGA.AA.A01Q.01A	17	41197645	41611179	62	0.1812	NEUTRAL	NA	6	"ARL4D,BRCA1,DHX8,ETV4,NBR1,TMEM106A"
TCGA.AF.3914.01A	17	41197645	42249366	177	-0.1667	NEUTRAL	NA	22	"ARL4D,ASB16,BRCA1,C17orf105,C17orf53,CD300LG,DHX8,DUSP3,ETV4,G6PC3,HDAC5,LSM12,MEOX1,MPP2,MPP3,NAGS,NBR1,PPY,PYY,SOST,TMEM101,TMEM106A"
TCGA.AA.A010.01A	17	41203016	41291886	21	-0.2221	NEUTRAL	NA	1	BRCA1
TCGA.F4.6704	17	41221595	44191084	607	-0.4911	NEUTRAL	NA	61	"ACBD4,ADAM11,ARHGAP27,ARL4D,ASB16,ATXN7L3,BRCA1,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CD300LG,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,FAM171A2,FMNL1,FZD2,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,ITGA2B,KANSL1,KIF18B,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MPP2,MPP3,NAGS,NBR1,NMT1,PLCD3,PLEKHM1,PPY,PYY,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,SPPL2C,STH,TMEM101,TMEM106A,TMUB2,UBTF"
TCGA.CK.5914.01A	17	41256829	41569504	38	-0.3105	NEUTRAL	NA	5	"ARL4D,BRCA1,DHX8,NBR1,TMEM106A"
TCGA.AG.4009.01A	17	41258420	41290749	4	-0.4836	NEUTRAL	NA	1	BRCA1
TCGA.AH.6549.01A	17	41291886	41477090	27	-0.4664	NEUTRAL	NA	3	"ARL4D,NBR1,TMEM106A"
TCGA.AA.A00N.01A	17	41338230	41856141	63	0.1623	NEUTRAL	NA	8	"ARL4D,DHX8,DUSP3,ETV4,MEOX1,NBR1,SOST,TMEM106A"
TCGA.AG.3906.01A	17	41353653	42229966	126	0.3608	NEUTRAL	NA	20	"ARL4D,C17orf105,C17orf53,CD300LG,DHX8,DUSP3,ETV4,G6PC3,HDAC5,LSM12,MEOX1,MPP2,MPP3,NAGS,NBR1,PPY,PYY,SOST,TMEM101,TMEM106A"
TCGA.DM.A1D0	17	41415521	44208673	587	0.2806	NEUTRAL	NA	58	"ACBD4,ADAM11,ARHGAP27,ARL4D,ASB16,ATXN7L3,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CD300LG,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,FAM171A2,FMNL1,FZD2,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,ITGA2B,KANSL1,KIF18B,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MPP2,MPP3,NAGS,NMT1,PLCD3,PLEKHM1,PPY,PYY,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,SPPL2C,STH,TMEM101,TMUB2,UBTF"
TCGA.AA.A01F.01A	17	41477090	42850163	198	-0.2729	NEUTRAL	NA	34	"ADAM11,ARL4D,ASB16,ATXN7L3,C17orf104,C17orf105,C17orf53,CCDC43,CD300LG,DBF4B,DHX8,DUSP3,ETV4,FAM171A2,FZD2,G6PC3,GPATCH8,GRN,HDAC5,ITGA2B,LSM12,MEOX1,MPP2,MPP3,NAGS,PPY,PYY,RUNDC3A,SLC25A39,SLC4A1,SOST,TMEM101,TMUB2,UBTF"
TCGA.AA.A02K.01A	17	41477091	42427549	190	-0.0996	NEUTRAL	NA	26	"ARL4D,ASB16,ATXN7L3,C17orf105,C17orf53,CD300LG,DHX8,DUSP3,ETV4,G6PC3,GRN,HDAC5,LSM12,MEOX1,MPP2,MPP3,NAGS,PPY,PYY,RUNDC3A,SLC25A39,SLC4A1,SOST,TMEM101,TMUB2,UBTF"
TCGA.AH.6549.01A	17	41477633	42018785	82	-0.0368	NEUTRAL	NA	11	"ARL4D,C17orf105,CD300LG,DHX8,DUSP3,ETV4,MEOX1,MPP2,MPP3,PPY,SOST"
TCGA.CM.5341	17	41602517	81048658	10425	0.0823	NEUTRAL	NA	485	Too-Many
TCGA.AG.3909.01A	17	41613723	41852032	10	-0.3738	NEUTRAL	NA	4	"DUSP3,ETV4,MEOX1,SOST"
TCGA.CK.5914.01A	17	41613723	41856141	10	-0.0098	NEUTRAL	NA	4	"DUSP3,ETV4,MEOX1,SOST"
TCGA.AA.A01Q.01A	17	41613723	42170734	69	-0.1536	NEUTRAL	NA	15	"C17orf105,CD300LG,DUSP3,ETV4,G6PC3,HDAC5,LSM12,MEOX1,MPP2,MPP3,NAGS,PPY,PYY,SOST,TMEM101"
TCGA.AG.4009.01A	17	41719271	41909201	21	-0.2596	NEUTRAL	NA	5	"C17orf105,DUSP3,MEOX1,MPP3,SOST"
TCGA.AG.A026	17	41727466	60664360	4623	0.0038	NEUTRAL	NA	221	Too-Many
TCGA.AG.3909.01A	17	41879019	41903068	10	0.1885	NEUTRAL	NA	1	MPP3
TCGA.AA.A00N.01A	17	41879019	41925887	19	-0.2544	NEUTRAL	NA	2	"CD300LG,MPP3"
TCGA.CK.5914.01A	17	41879019	42082964	40	-0.0287	NEUTRAL	NA	6	"CD300LG,MPP2,MPP3,NAGS,PPY,PYY"
TCGA.AA.A010.01A	17	41891333	41956595	22	0.082	NEUTRAL	NA	3	"CD300LG,MPP2,MPP3"
TCGA.AG.3909.01A	17	41905063	42271603	80	-0.3172	NEUTRAL	NA	14	"ASB16,ATXN7L3,C17orf53,CD300LG,G6PC3,HDAC5,LSM12,MPP2,MPP3,NAGS,PPY,PYY,TMEM101,TMUB2"
TCGA.AG.3891.01A	17	41909201	41975583	17	-0.0657	NEUTRAL	NA	3	"CD300LG,MPP2,MPP3"
TCGA.AA.3517	17	41953997	42570345	89	0.081	NEUTRAL	NA	20	"ASB16,ATXN7L3,C17orf53,FAM171A2,G6PC3,GPATCH8,GRN,HDAC5,ITGA2B,LSM12,MPP2,NAGS,PPY,PYY,RUNDC3A,SLC25A39,SLC4A1,TMEM101,TMUB2,UBTF"
TCGA.CK.4952.01A	17	41972796	74012923	3293	-0.1319	NEUTRAL	NA	351	Too-Many
TCGA.AA.A00N.01A	17	41981726	42194772	44	-0.2661	NEUTRAL	NA	8	"G6PC3,HDAC5,LSM12,MPP2,NAGS,PPY,PYY,TMEM101"
TCGA.F4.6461	17	42021247	81048658	10280	-0.0233	NEUTRAL	NA	475	Too-Many
TCGA.AH.6549.01A	17	42030255	81051974	4473	0.2948	NEUTRAL	NA	475	Too-Many
TCGA.AF.2689	17	42045211	52817246	2507	-0.3737	NEUTRAL	NA	145	Too-Many
TCGA.AG.4009.01A	17	42082964	42152289	16	-0.062	NEUTRAL	NA	4	"G6PC3,LSM12,NAGS,TMEM101"
TCGA.CK.5914.01A	17	42083869	42255536	52	-0.4966	NEUTRAL	NA	7	"ASB16,C17orf53,G6PC3,HDAC5,LSM12,NAGS,TMEM101"
TCGA.AA.A010.01A	17	42085778	42170734	34	-0.0672	NEUTRAL	NA	5	"G6PC3,HDAC5,LSM12,NAGS,TMEM101"
TCGA.AG.A01L.01A	17	42170734	42449685	71	-0.3099	NEUTRAL	NA	12	"ASB16,ATXN7L3,C17orf53,FAM171A2,GRN,HDAC5,ITGA2B,RUNDC3A,SLC25A39,SLC4A1,TMUB2,UBTF"
TCGA.A6.6138	17	42252162	70407855	7414	0.0114	NEUTRAL	NA	271	Too-Many
TCGA.A6.3810.01A	17	42254961	42295467	26	-0.3703	NEUTRAL	NA	4	"ASB16,ATXN7L3,TMUB2,UBTF"
TCGA.AA.A00N.01A	17	42295467	42386153	18	0.2216	NEUTRAL	NA	3	"RUNDC3A,SLC4A1,UBTF"
TCGA.AG.3909.01A	17	42295467	42766871	68	-0.0573	NEUTRAL	NA	11	"C17orf104,CCDC43,FAM171A2,FZD2,GPATCH8,GRN,ITGA2B,RUNDC3A,SLC25A39,SLC4A1,UBTF"
TCGA.CK.5914.01A	17	42295467	42766871	82	-0.3875	NEUTRAL	NA	11	"C17orf104,CCDC43,FAM171A2,FZD2,GPATCH8,GRN,ITGA2B,RUNDC3A,SLC25A39,SLC4A1,UBTF"
TCGA.AG.A00C.01A	17	42295467	43334451	207	0.1255	NEUTRAL	NA	28	"ACBD4,ADAM11,C17orf104,C1QL1,CCDC103,CCDC43,DBF4B,DCAKD,EFTUD2,FAM171A2,FMNL1,FZD2,GFAP,GJC1,GPATCH8,GRN,HEXIM1,HEXIM2,HIGD1B,ITGA2B,KIF18B,NMT1,PLCD3,RUNDC3A,SLC25A39,SLC4A1,SPATA32,UBTF"
TCGA.AA.A010.01A	17	42327765	42386153	17	-0.4924	NEUTRAL	NA	2	"RUNDC3A,SLC4A1"
TCGA.AF.3914.01A	17	42327765	42386153	17	-0.1216	NEUTRAL	NA	2	"RUNDC3A,SLC4A1"
TCGA.A6.3810.01A	17	42327765	81051974	4456	-0.0086	NEUTRAL	NA	464	Too-Many
TCGA.AF.2692	17	42354656	44868475	450	0.068	NEUTRAL	NA	41	"ACBD4,ADAM11,ARHGAP27,ARL17A,ARL17B,C17orf104,C1QL1,CCDC103,CCDC43,CRHR1,DBF4B,DCAKD,EFTUD2,FAM171A2,FMNL1,FZD2,GFAP,GJC1,GPATCH8,GRN,HEXIM1,HEXIM2,HIGD1B,ITGA2B,KANSL1,KIF18B,LRRC37A,LRRC37A2,MAP3K14,MAPT,MGC57346-CRHR1,NMT1,NSF,PLCD3,PLEKHM1,RUNDC3A,SLC25A39,SPATA32,SPPL2C,STH,WNT3"
TCGA.AG.3611.01A	17	42398384	42426511	7	0.1583	NEUTRAL	NA	2	"GRN,SLC25A39"
TCGA.AG.3611.01A	17	42427579	42552145	27	-0.3124	NEUTRAL	NA	4	"FAM171A2,GPATCH8,GRN,ITGA2B"
TCGA.AA.A01Q.01A	17	42431050	42458208	14	-0.151	NEUTRAL	NA	2	"FAM171A2,ITGA2B"
TCGA.AA.3869	17	42437753	81048658	10240	-0.3788	NEUTRAL	NA	460	Too-Many
TCGA.AG.4009.01A	17	42449685	42580619	22	0.366	NEUTRAL	NA	2	"GPATCH8,ITGA2B"
TCGA.AG.A016.01A	17	42449685	43246381	147	0.2981	NEUTRAL	NA	20	"ACBD4,ADAM11,C17orf104,C1QL1,CCDC103,CCDC43,DBF4B,DCAKD,EFTUD2,FZD2,GFAP,GJC1,GPATCH8,HEXIM1,HEXIM2,HIGD1B,ITGA2B,KIF18B,NMT1,PLCD3"
TCGA.AA.A02K.01A	17	42451681	67181592	2488	-0.0875	NEUTRAL	NA	257	Too-Many
TCGA.AG.3906.01A	17	42451702	42786607	31	0.3185	NEUTRAL	NA	6	"C17orf104,CCDC43,DBF4B,FZD2,GPATCH8,ITGA2B"
TCGA.AA.A010.01A	17	42455689	42786607	34	-0.0163	NEUTRAL	NA	6	"C17orf104,CCDC43,DBF4B,FZD2,GPATCH8,ITGA2B"
TCGA.AF.3914.01A	17	42455689	43205379	142	-0.3564	NEUTRAL	NA	17	"ADAM11,C17orf104,C1QL1,CCDC103,CCDC43,DBF4B,DCAKD,EFTUD2,FZD2,GFAP,GJC1,GPATCH8,HIGD1B,ITGA2B,KIF18B,NMT1,PLCD3"
TCGA.AG.A023.01A	17	42457017	67008079	2183	0.1474	NEUTRAL	NA	255	Too-Many
TCGA.AA.A01Q.01A	17	42460832	42837039	32	0.3136	NEUTRAL	NA	7	"ADAM11,C17orf104,CCDC43,DBF4B,FZD2,GPATCH8,ITGA2B"
TCGA.AA.A00N.01A	17	42501670	42734488	9	-0.0314	NEUTRAL	NA	3	"C17orf104,FZD2,GPATCH8"
TCGA.AG.A01L.01A	17	42512386	43220761	128	-0.4756	NEUTRAL	NA	17	"ACBD4,ADAM11,C17orf104,C1QL1,CCDC103,CCDC43,DBF4B,DCAKD,EFTUD2,FZD2,GFAP,GJC1,GPATCH8,HIGD1B,KIF18B,NMT1,PLCD3"
TCGA.AG.3611.01A	17	42580619	44249094	173	0.3519	NEUTRAL	NA	30	"ACBD4,ADAM11,ARHGAP27,C17orf104,C1QL1,CCDC103,CCDC43,CRHR1,DBF4B,DCAKD,EFTUD2,FMNL1,FZD2,GFAP,GJC1,GPATCH8,HEXIM1,HEXIM2,HIGD1B,KANSL1,KIF18B,MAP3K14,MAPT,MGC57346-CRHR1,NMT1,PLCD3,PLEKHM1,SPATA32,SPPL2C,STH"
TCGA.AG.4009.01A	17	42635025	42746712	4	-0.5098	NEUTRAL	NA	2	"C17orf104,FZD2"
TCGA.AA.A01T	17	42655050	81048658	10215	-0.228	NEUTRAL	NA	456	Too-Many
TCGA.AA.A00N.01A	17	42811398	42928603	28	0.0152	NEUTRAL	NA	5	"ADAM11,DBF4B,EFTUD2,GJC1,HIGD1B"
TCGA.AG.4009.01A	17	42824419	42854492	14	0.1172	NEUTRAL	NA	2	"ADAM11,DBF4B"
TCGA.CK.5914.01A	17	42825660	42934383	29	-0.2661	NEUTRAL	NA	5	"ADAM11,DBF4B,EFTUD2,GJC1,HIGD1B"
TCGA.AG.3909.01A	17	42847027	42856497	11	-0.3235	NEUTRAL	NA	1	ADAM11
TCGA.AA.A01Q.01A	17	42847027	43246381	87	-0.0831	NEUTRAL	NA	14	"ACBD4,ADAM11,C1QL1,CCDC103,DCAKD,EFTUD2,GFAP,GJC1,HEXIM1,HEXIM2,HIGD1B,KIF18B,NMT1,PLCD3"
TCGA.AG.3891.01A	17	42849570	42857015	11	-0.0194	NEUTRAL	NA	1	ADAM11
TCGA.AA.A01F.01A	17	42850592	42854492	6	0.212	NEUTRAL	NA	1	ADAM11
TCGA.AA.3517	17	42854207	44166269	311	0.0548	NEUTRAL	NA	25	"ACBD4,ADAM11,ARHGAP27,C1QL1,CCDC103,CRHR1,DCAKD,EFTUD2,FMNL1,GFAP,GJC1,HEXIM1,HEXIM2,HIGD1B,KANSL1,KIF18B,MAP3K14,MAPT,MGC57346-CRHR1,NMT1,PLCD3,PLEKHM1,SPATA32,SPPL2C,STH"
TCGA.AA.A01F.01A	17	42854798	43318449	82	-0.3477	NEUTRAL	NA	15	"ACBD4,ADAM11,C1QL1,CCDC103,DCAKD,EFTUD2,FMNL1,GFAP,GJC1,HEXIM1,HEXIM2,HIGD1B,KIF18B,NMT1,PLCD3"
TCGA.AA.A010.01A	17	42934383	42963911	18	-0.1028	NEUTRAL	NA	1	EFTUD2
TCGA.AA.A00N.01A	17	42958972	42991329	19	-0.5032	NEUTRAL	NA	3	"CCDC103,EFTUD2,GFAP"
TCGA.AG.3906.01A	17	42963911	43013362	25	0.3057	NEUTRAL	NA	4	"CCDC103,EFTUD2,GFAP,KIF18B"
TCGA.CK.5914.01A	17	42971738	43112095	34	-0.2813	NEUTRAL	NA	6	"C1QL1,CCDC103,DCAKD,EFTUD2,GFAP,KIF18B"
TCGA.AG.3909.01A	17	42971738	43192415	48	0.0792	NEUTRAL	NA	8	"C1QL1,CCDC103,DCAKD,EFTUD2,GFAP,KIF18B,NMT1,PLCD3"
TCGA.AA.A00Q.01A	17	42984639	42992386	9	-0.3231	NEUTRAL	NA	1	GFAP
TCGA.AG.3891.01A	17	42992386	43013362	14	-0.2743	NEUTRAL	NA	2	"GFAP,KIF18B"
TCGA.AA.A00N.01A	17	42992386	43195344	39	0.0786	NEUTRAL	NA	6	"C1QL1,DCAKD,GFAP,KIF18B,NMT1,PLCD3"
TCGA.CM.6166	17	43030678	43055578	6	-0.2211	NEUTRAL	NA	1	C1QL1
TCGA.AG.4009.01A	17	43037508	43138659	7	-0.3242	NEUTRAL	NA	2	"C1QL1,DCAKD"
TCGA.AA.A00Q.01A	17	43037508	45387439	147	0.246	NEUTRAL	NA	30	"ACBD4,ARHGAP27,ARL17A,ARL17B,C1QL1,CDC27,CRHR1,DCAKD,FMNL1,GOSR2,HEXIM1,HEXIM2,ITGB3,KANSL1,LRRC37A,LRRC37A2,MAP3K14,MAPT,MGC57346-CRHR1,MYL4,NMT1,NSF,PLCD3,PLEKHM1,RPRML,SPATA32,SPPL2C,STH,WNT3,WNT9B"
TCGA.CM.6166	17	43055717	46330059	638	0.3767	NEUTRAL	NA	48	"ACBD4,ARHGAP27,ARL17A,ARL17B,CBX1,CDC27,CDK5RAP3,COPZ2,CRHR1,DCAKD,EFCAB13,FMNL1,GOSR2,HEXIM1,HEXIM2,ITGB3,KANSL1,KPNB1,LRRC37A,LRRC37A2,LRRC46,MAP3K14,MAPT,MGC57346-CRHR1,MRPL10,MYL4,NFE2L1,NMT1,NPEPPS,NSF,OSBPL7,PLCD3,PLEKHM1,PNPO,PRR15L,RPRML,SCRN2,SKAP1,SNX11,SP2,SP6,SPATA32,SPPL2C,STH,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.AA.A010.01A	17	43138659	43299440	37	-0.0172	NEUTRAL	NA	6	"ACBD4,FMNL1,HEXIM1,HEXIM2,NMT1,PLCD3"
TCGA.AG.4009.01A	17	43158965	43196135	18	0.3101	NEUTRAL	NA	2	"NMT1,PLCD3"
TCGA.CK.5914.01A	17	43180272	43209588	17	-0.0725	NEUTRAL	NA	2	"NMT1,PLCD3"
TCGA.F5.6702	17	43183419	54158455	2890	0.0093	NEUTRAL	NA	121	Too-Many
TCGA.AG.3891.01A	17	43189937	43220761	17	0.1937	NEUTRAL	NA	2	"ACBD4,PLCD3"
TCGA.AG.3909.01A	17	43193958	43333676	40	-0.3571	NEUTRAL	NA	6	"ACBD4,FMNL1,HEXIM1,HEXIM2,PLCD3,SPATA32"
TCGA.AG.4009.01A	17	43216361	43246381	6	0.2999	NEUTRAL	NA	3	"ACBD4,HEXIM1,HEXIM2"
TCGA.AF.3914.01A	17	43216361	43314872	14	-0.3691	NEUTRAL	NA	4	"ACBD4,FMNL1,HEXIM1,HEXIM2"
TCGA.AG.A01L.01A	17	43240094	43911960	71	-0.3276	NEUTRAL	NA	8	"ARHGAP27,CRHR1,FMNL1,HEXIM2,MAP3K14,MGC57346-CRHR1,PLEKHM1,SPATA32"
TCGA.AA.A01F.01A	17	43319661	43323836	8	0.094	NEUTRAL	NA	1	FMNL1
TCGA.AG.4009.01A	17	43323836	43334451	5	-0.4314	NEUTRAL	NA	2	"FMNL1,SPATA32"
TCGA.AG.A016.01A	17	43323836	43367815	18	0.3061	NEUTRAL	NA	3	"FMNL1,MAP3K14,SPATA32"
TCGA.AA.A01F.01A	17	43331735	43475288	9	-0.2855	NEUTRAL	NA	3	"ARHGAP27,MAP3K14,SPATA32"
TCGA.AF.3914.01A	17	43331735	46106430	297	-0.203	NEUTRAL	NA	37	"ARHGAP27,ARL17A,ARL17B,CDC27,CDK5RAP3,COPZ2,CRHR1,EFCAB13,GOSR2,ITGB3,KANSL1,KPNB1,LRRC37A,LRRC37A2,LRRC46,MAP3K14,MAPT,MGC57346-CRHR1,MRPL10,MYL4,NPEPPS,NSF,OSBPL7,PLEKHM1,PNPO,PRR15L,RPRML,SCRN2,SP2,SP6,SPATA32,SPPL2C,STH,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.AG.3891.01A	17	43333676	49730951	795	0.219	NEUTRAL	NA	106	Too-Many
TCGA.CK.5914.01A	17	43334451	45384796	168	-0.1235	NEUTRAL	NA	22	"ARHGAP27,ARL17A,ARL17B,CDC27,CRHR1,GOSR2,ITGB3,KANSL1,LRRC37A,LRRC37A2,MAP3K14,MAPT,MGC57346-CRHR1,MYL4,NSF,PLEKHM1,RPRML,SPATA32,SPPL2C,STH,WNT3,WNT9B"
TCGA.AA.A01Q.01A	17	43339301	43473093	5	0.3373	NEUTRAL	NA	3	"ARHGAP27,MAP3K14,SPATA32"
TCGA.AG.A00C.01A	17	43341971	43363768	11	-0.1983	NEUTRAL	NA	1	MAP3K14
TCGA.AA.3994	17	43347609	57875553	3911	-0.0013	NEUTRAL	NA	155	Too-Many
TCGA.AA.A010.01A	17	43347733	43475288	15	0.0325	NEUTRAL	NA	2	"ARHGAP27,MAP3K14"
TCGA.AA.A01C.01A	17	43351783	66519811	2011	-0.1249	NEUTRAL	NA	230	Too-Many
TCGA.AA.A01F.01A	17	43480040	43517474	9	0.2403	NEUTRAL	NA	2	"ARHGAP27,PLEKHM1"
TCGA.AG.4009.01A	17	43480940	43522795	9	-0.1893	NEUTRAL	NA	2	"ARHGAP27,PLEKHM1"
TCGA.AG.A00C.01A	17	43482975	44171876	52	-0.151	NEUTRAL	NA	8	"ARHGAP27,CRHR1,KANSL1,MAPT,MGC57346-CRHR1,PLEKHM1,SPPL2C,STH"
TCGA.AG.3909.01A	17	43482975	44594509	69	0.2678	NEUTRAL	NA	12	"ARHGAP27,ARL17A,ARL17B,CRHR1,KANSL1,LRRC37A,LRRC37A2,MAPT,MGC57346-CRHR1,PLEKHM1,SPPL2C,STH"
TCGA.AG.A016.01A	17	43522795	44171876	47	0.1052	NEUTRAL	NA	7	"CRHR1,KANSL1,MAPT,MGC57346-CRHR1,PLEKHM1,SPPL2C,STH"
TCGA.AA.3862.01A	17	43522795	44374718	55	0.02	NEUTRAL	NA	8	"CRHR1,KANSL1,LRRC37A,MAPT,MGC57346-CRHR1,PLEKHM1,SPPL2C,STH"
TCGA.AA.A00N.01A	17	43522795	44374718	55	0.3723	NEUTRAL	NA	8	"CRHR1,KANSL1,LRRC37A,MAPT,MGC57346-CRHR1,PLEKHM1,SPPL2C,STH"
TCGA.AA.A01Q.01A	17	43522795	45258869	67	0.054	NEUTRAL	NA	17	"ARL17A,ARL17B,CDC27,CRHR1,GOSR2,KANSL1,LRRC37A,LRRC37A2,MAPT,MGC57346-CRHR1,NSF,PLEKHM1,RPRML,SPPL2C,STH,WNT3,WNT9B"
TCGA.AG.4009.01A	17	43527947	43559725	7	0.3571	NEUTRAL	NA	1	PLEKHM1
TCGA.AA.A01F.01A	17	43530741	48458133	463	-0.2998	NEUTRAL	NA	83	"ABI3,ARL17A,ARL17B,ATP5G1,B4GALNT2,CALCOCO2,CBX1,CDC27,CDK5RAP3,COL1A1,COPZ2,CRHR1,DLX3,DLX4,EFCAB13,EME1,FAM117A,FLJ45513,GIP,GNGT2,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,ITGB3,KANSL1,KAT7,KPNB1,LRRC37A,LRRC37A2,LRRC46,MAPT,MGC57346-CRHR1,MRPL10,MRPL27,MYL4,NFE2L1,NGFR,NPEPPS,NSF,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PLEKHM1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RPRML,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPOP,SPPL2C,STH,TAC4,TBKBP1,TBX21,TMEM92,TTLL6,UBE2Z,WNT3,WNT9B,XYLT2,ZNF652"
TCGA.CK.5913	17	43657920	44162596	166	-0.0325	NEUTRAL	NA	6	"CRHR1,KANSL1,MAPT,MGC57346-CRHR1,SPPL2C,STH"
TCGA.F4.6570	17	43693537	44153521	162	-0.132	NEUTRAL	NA	6	"CRHR1,KANSL1,MAPT,MGC57346-CRHR1,SPPL2C,STH"
TCGA.AA.3518	17	43795432	44180953	134	0.0599	NEUTRAL	NA	6	"CRHR1,KANSL1,MAPT,MGC57346-CRHR1,SPPL2C,STH"
TCGA.AA.3818	17	43928123	81048658	9964	-0.0286	NEUTRAL	NA	431	Too-Many
TCGA.EI.6514	17	43955486	81048658	9945	0.2388	NEUTRAL	NA	431	Too-Many
TCGA.AA.3941	17	44110669	44165802	24	-0.1674	NEUTRAL	NA	1	KANSL1
TCGA.AA.3811	17	44116237	44811097	74	-0.3177	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.AA.A010.01A	17	44127882	44806164	35	0.1604	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.AG.4009.01A	17	44127882	45456485	95	0.2875	NEUTRAL	NA	14	"ARL17A,ARL17B,CDC27,EFCAB13,GOSR2,ITGB3,KANSL1,LRRC37A,LRRC37A2,MYL4,NSF,RPRML,WNT3,WNT9B"
TCGA.CA.5254	17	44144386	56814455	3585	-0.5052	NEUTRAL	NA	136	Too-Many
TCGA.F4.6570	17	44157596	44269545	42	0.2947	NEUTRAL	NA	1	KANSL1
TCGA.AG.3890	17	44157596	44809000	57	0.3526	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.AZ.6599	17	44162283	44789284	51	0.2939	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.CM.5860	17	44162283	44789284	50	-0.4962	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.AF.A56N	17	44162596	44809000	55	-0.1641	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.AA.3530	17	44162596	44811097	57	-0.2243	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.A6.5666	17	44165802	44269292	38	-0.0103	NEUTRAL	NA	1	KANSL1
TCGA.DM.A1HB	17	44165802	44269292	38	-0.2947	NEUTRAL	NA	1	KANSL1
TCGA.AD.6890	17	44165802	44352871	46	-0.1691	NEUTRAL	NA	1	KANSL1
TCGA.CK.5913	17	44165802	44352871	47	-0.4036	NEUTRAL	NA	1	KANSL1
TCGA.A6.6140	17	44165802	44353884	48	-0.4891	NEUTRAL	NA	1	KANSL1
TCGA.A6.6652	17	44165802	44353884	47	-0.1804	NEUTRAL	NA	1	KANSL1
TCGA.CM.6163	17	44165802	44353884	47	-0.3101	NEUTRAL	NA	1	KANSL1
TCGA.G4.6314	17	44165802	44353884	48	-0.087	NEUTRAL	NA	1	KANSL1
TCGA.A6.5660	17	44166269	44353884	44	-0.2884	NEUTRAL	NA	1	KANSL1
TCGA.G4.6302	17	44180953	44353884	43	0.3035	NEUTRAL	NA	1	KANSL1
TCGA.AA.3941	17	44187491	46255669	349	0.0569	NEUTRAL	NA	32	"ARL17A,ARL17B,CBX1,CDC27,CDK5RAP3,COPZ2,EFCAB13,GOSR2,ITGB3,KANSL1,KPNB1,LRRC37A,LRRC37A2,LRRC46,MRPL10,MYL4,NFE2L1,NPEPPS,NSF,OSBPL7,PNPO,PRR15L,RPRML,SCRN2,SKAP1,SNX11,SP2,SP6,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.F4.6704	17	44197602	44352871	39	-0.0349	NEUTRAL	NA	1	KANSL1
TCGA.DM.A1D0	17	44213203	44353884	34	-0.0862	NEUTRAL	NA	1	KANSL1
TCGA.A6.6653	17	44219554	59454009	3918	-0.0062	NEUTRAL	NA	157	Too-Many
TCGA.AA.3841	17	44222137	44809000	36	-0.3363	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.AA.3522	17	44234525	81048658	9853	-0.0245	NEUTRAL	NA	429	Too-Many
TCGA.AG.A00C.01A	17	44248211	44707698	26	0.3017	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.AG.A016.01A	17	44248211	44707698	17	-0.324	NEUTRAL	NA	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.DM.A1HB	17	44269545	54776954	2836	0.0054	NEUTRAL	NA	108	Too-Many
TCGA.AA.3877	17	44280187	81048658	9831	0.0157	NEUTRAL	NA	429	Too-Many
TCGA.F4.6570	17	44280187	81048658	9838	-0.0232	NEUTRAL	NA	429	Too-Many
TCGA.AA.3524	17	44352871	81048658	9815	-0.0423	NEUTRAL	NA	428	Too-Many
TCGA.AA.3870	17	44353884	51938563	1834	0.0587	NEUTRAL	NA	98	"ABCC3,ABI3,ACSF2,ANKRD40,ARL17A,ARL17B,ATP5G1,B4GALNT2,C17orf112,CA10,CACNA1G,CALCOCO2,CBX1,CDC27,CDK5RAP3,CHAD,COL1A1,COPZ2,DLX3,DLX4,EFCAB13,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,ITGB3,KAT7,KIF2B,KPNB1,LRRC37A,LRRC37A2,LRRC46,LRRC59,LUC7L3,MBTD1,MRPL10,MRPL27,MYCBPAP,MYL4,NFE2L1,NGFR,NME1,NME1-NME2,NME2,NPEPPS,NSF,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RPRML,RSAD1,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPAG9,SPATA20,SPOP,TAC4,TBKBP1,TBX21,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,WNT3,WNT9B,XYLT2,ZNF652"
TCGA.F4.6704	17	44353884	53599730	2348	-0.4813	NEUTRAL	NA	103	Too-Many
TCGA.AD.6890	17	44353884	54158455	2620	0.2554	NEUTRAL	NA	105	Too-Many
TCGA.AA.3532	17	44353884	57219390	3567	-0.037	NEUTRAL	NA	138	Too-Many
TCGA.AA.3848	17	44353884	64368046	4858	0.0701	NEUTRAL	NA	206	Too-Many
TCGA.A6.6780	17	44353884	81048658	9809	0.032	NEUTRAL	NA	428	Too-Many
TCGA.AA.3518	17	44353884	81048658	9798	0.0249	NEUTRAL	NA	428	Too-Many
TCGA.AA.3526	17	44353884	81048658	9828	-0.0136	NEUTRAL	NA	428	Too-Many
TCGA.AA.3529	17	44353884	81048658	9827	-0.0188	NEUTRAL	NA	428	Too-Many
TCGA.CK.5913	17	44353884	81048658	9819	0.0071	NEUTRAL	NA	428	Too-Many
TCGA.D5.6538	17	44353884	81048658	9826	0.3393	NEUTRAL	NA	428	Too-Many
TCGA.DM.A28M.01A	17	44630690	67151128	2201	0.1749	NEUTRAL	NA	224	Too-Many
TCGA.AG.A00C.01A	17	44770230	45384796	60	-0.0586	NEUTRAL	NA	9	"ARL17A,CDC27,GOSR2,ITGB3,MYL4,NSF,RPRML,WNT3,WNT9B"
TCGA.AG.A016.01A	17	44770230	47018239	278	0.3094	NEUTRAL	NA	45	"ARL17A,ATP5G1,CALCOCO2,CBX1,CDC27,CDK5RAP3,COPZ2,EFCAB13,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,ITGB3,KPNB1,LRRC46,MRPL10,MYL4,NFE2L1,NPEPPS,NSF,OSBPL7,PNPO,PRAC1,PRAC2,PRR15L,RPRML,SCRN2,SKAP1,SNF8,SNX11,SP2,SP6,TBKBP1,TBX21,TTLL6,UBE2Z,WNT3,WNT9B"
TCGA.AA.3982	17	44789284	44819594	9	0.0216	NEUTRAL	NA	1	NSF
TCGA.DM.A1D0	17	44789284	50599382	1461	0.2693	NEUTRAL	NA	93	"ABCC3,ABI3,ACSF2,ANKRD40,ARL17A,ATP5G1,B4GALNT2,CA10,CACNA1G,CALCOCO2,CBX1,CDC27,CDK5RAP3,CHAD,COL1A1,COPZ2,DLX3,DLX4,EFCAB13,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,ITGB3,KAT7,KPNB1,LRRC46,LRRC59,LUC7L3,MBTD1,MRPL10,MRPL27,MYCBPAP,MYL4,NFE2L1,NGFR,NME1,NME1-NME2,NME2,NPEPPS,NSF,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RPRML,RSAD1,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPAG9,SPATA20,SPOP,TAC4,TBKBP1,TBX21,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,WNT3,WNT9B,XYLT2,ZNF652"
TCGA.AG.3594	17	44789284	55887188	3358	0.0295	NEUTRAL	NA	112	Too-Many
TCGA.5M.AATE	17	44789284	56195245	3440	0.2196	NEUTRAL	NA	117	Too-Many
TCGA.AA.3972	17	44789284	72356732	7763	0.1171	NEUTRAL	NA	242	Too-Many
TCGA.A6.5660	17	44789284	81048658	9804	0.2088	NEUTRAL	NA	425	Too-Many
TCGA.A6.6140	17	44789284	81048658	9830	0.0019	NEUTRAL	NA	425	Too-Many
TCGA.A6.6141	17	44789284	81048658	9824	-0.023	NEUTRAL	NA	425	Too-Many
TCGA.CA.5797	17	44789284	81048658	9816	-0.3257	NEUTRAL	NA	425	Too-Many
TCGA.CM.5861	17	44789284	81048658	9809	-0.0071	NEUTRAL	NA	425	Too-Many
TCGA.CM.6163	17	44789284	81048658	9785	-0.0167	NEUTRAL	NA	425	Too-Many
TCGA.D5.5539	17	44789284	81048658	9817	0.2391	NEUTRAL	NA	425	Too-Many
TCGA.EI.7004	17	44789284	81048658	9803	0.0079	NEUTRAL	NA	425	Too-Many
TCGA.G4.6302	17	44789284	81048658	9831	-0.0138	NEUTRAL	NA	425	Too-Many
TCGA.G4.6314	17	44789284	81048658	9831	0.2571	NEUTRAL	NA	425	Too-Many
TCGA.AA.3861.01A	17	44791169	45507145	81	-0.1634	NEUTRAL	NA	10	"ARL17A,CDC27,EFCAB13,GOSR2,ITGB3,MYL4,NSF,RPRML,WNT3,WNT9B"
TCGA.AA.3862.01A	17	44791169	45507145	81	-0.3054	NEUTRAL	NA	10	"ARL17A,CDC27,EFCAB13,GOSR2,ITGB3,MYL4,NSF,RPRML,WNT3,WNT9B"
TCGA.A6.3808.01A	17	44791169	45517759	82	0.348	NEUTRAL	NA	10	"ARL17A,CDC27,EFCAB13,GOSR2,ITGB3,MYL4,NSF,RPRML,WNT3,WNT9B"
TCGA.AZ.6599	17	44795189	81048658	9830	-0.0519	NEUTRAL	NA	425	Too-Many
TCGA.CM.5860	17	44795189	81048658	9802	-0.024	NEUTRAL	NA	425	Too-Many
TCGA.CK.4947	17	44795233	81048658	9809	-0.0343	NEUTRAL	NA	425	Too-Many
TCGA.AA.3841	17	44810893	81048658	9826	0.0673	NEUTRAL	NA	425	Too-Many
TCGA.AF.A56N	17	44810893	81048658	9794	0.0952	NEUTRAL	NA	425	Too-Many
TCGA.AG.3890	17	44810893	81048658	9789	-0.0002	NEUTRAL	NA	425	Too-Many
TCGA.AA.3811	17	44819594	49487264	1021	0.2437	NEUTRAL	NA	92	"ABCC3,ABI3,ACSF2,ANKRD40,ARL17A,ATP5G1,B4GALNT2,CACNA1G,CALCOCO2,CBX1,CDC27,CDK5RAP3,CHAD,COL1A1,COPZ2,DLX3,DLX4,EFCAB13,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,ITGB3,KAT7,KPNB1,LRRC46,LRRC59,LUC7L3,MBTD1,MRPL10,MRPL27,MYCBPAP,MYL4,NFE2L1,NGFR,NME1,NME1-NME2,NME2,NPEPPS,NSF,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RPRML,RSAD1,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPAG9,SPATA20,SPOP,TAC4,TBKBP1,TBX21,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,WNT3,WNT9B,XYLT2,ZNF652"
TCGA.AA.3530	17	44819594	81048658	9795	0.1618	NEUTRAL	NA	425	Too-Many
TCGA.AA.3517	17	44822661	51108838	1609	0.0501	NEUTRAL	NA	94	"ABCC3,ABI3,ACSF2,ANKRD40,ARL17A,ATP5G1,B4GALNT2,C17orf112,CA10,CACNA1G,CALCOCO2,CBX1,CDC27,CDK5RAP3,CHAD,COL1A1,COPZ2,DLX3,DLX4,EFCAB13,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,ITGB3,KAT7,KPNB1,LRRC46,LRRC59,LUC7L3,MBTD1,MRPL10,MRPL27,MYCBPAP,MYL4,NFE2L1,NGFR,NME1,NME1-NME2,NME2,NPEPPS,NSF,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RPRML,RSAD1,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPAG9,SPATA20,SPOP,TAC4,TBKBP1,TBX21,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,WNT3,WNT9B,XYLT2,ZNF652"
TCGA.AA.A00N.01A	17	44827111	45258869	36	-0.1433	NEUTRAL	NA	7	"ARL17A,CDC27,GOSR2,NSF,RPRML,WNT3,WNT9B"
TCGA.AA.A00L.01A	17	44845639	44851007	3	-0.1384	NEUTRAL	NA	1	WNT3
TCGA.AG.3611.01A	17	44845639	65733613	1521	-0.4255	NEUTRAL	NA	209	Too-Many
TCGA.AA.3968	17	44856931	47685199	605	0.1315	NEUTRAL	NA	55	"ABI3,ARL17A,ATP5G1,B4GALNT2,CALCOCO2,CBX1,CDC27,CDK5RAP3,COPZ2,EFCAB13,GIP,GNGT2,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGB3,KPNB1,LRRC46,MRPL10,MYL4,NFE2L1,NGFR,NPEPPS,NXPH3,OSBPL7,PHB,PHOSPHO1,PNPO,PRAC1,PRAC2,PRR15L,RPRML,SCRN2,SKAP1,SNF8,SNX11,SP2,SP6,SPOP,TBKBP1,TBX21,TTLL6,UBE2Z,WNT3,WNT9B,ZNF652"
TCGA.AF.2692	17	44933568	53100167	2127	0.0593	NEUTRAL	NA	96	"ABCC3,ABI3,ACSF2,ANKRD40,ARL17A,ATP5G1,B4GALNT2,C17orf112,CA10,CACNA1G,CALCOCO2,CBX1,CDC27,CDK5RAP3,CHAD,COL1A1,COPZ2,COX11,DLX3,DLX4,EFCAB13,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,ITGB3,KAT7,KIF2B,KPNB1,LRRC46,LRRC59,LUC7L3,MBTD1,MRPL10,MRPL27,MYCBPAP,MYL4,NFE2L1,NGFR,NME1,NME1-NME2,NME2,NPEPPS,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RPRML,RSAD1,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPAG9,SPATA20,SPOP,STXBP4,TAC4,TBKBP1,TBX21,TMEM92,TOB1,TOM1L1,TTLL6,UBE2Z,UTP18,WFIKKN2,WNT9B,XYLT2,ZNF652"
TCGA.AG.3909.01A	17	44949834	45012356	7	-0.4689	NEUTRAL	NA	2	"GOSR2,WNT9B"
TCGA.AG.3909.01A	17	45015940	45219548	12	0.1929	NEUTRAL	NA	4	"ARL17A,CDC27,GOSR2,RPRML"
TCGA.F5.6464	17	45018462	45957590	164	-0.4733	NEUTRAL	NA	16	"ARL17A,CDC27,EFCAB13,GOSR2,ITGB3,KPNB1,LRRC46,MRPL10,MYL4,NPEPPS,OSBPL7,RPRML,SCRN2,SP6,TBKBP1,TBX21"
TCGA.NH.A50V	17	45187428	49516428	940	-0.0773	NEUTRAL	NA	86	"ABCC3,ABI3,ACSF2,ANKRD40,ATP5G1,B4GALNT2,CACNA1G,CALCOCO2,CBX1,CDC27,CDK5RAP3,CHAD,COL1A1,COPZ2,DLX3,DLX4,EFCAB13,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,ITGB3,KAT7,KPNB1,LRRC46,LRRC59,LUC7L3,MBTD1,MRPL10,MRPL27,MYCBPAP,MYL4,NFE2L1,NGFR,NME1,NME1-NME2,NME2,NPEPPS,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RSAD1,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPAG9,SPATA20,SPOP,TAC4,TBKBP1,TBX21,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.AZ.4684.01A	17	45199761	45258869	16	-0.4956	NEUTRAL	NA	1	CDC27
TCGA.AG.3909.01A	17	45221199	45258869	8	-0.3536	NEUTRAL	NA	1	CDC27
TCGA.AZ.4684.01A	17	45266429	45419240	24	0.0328	NEUTRAL	NA	4	"CDC27,EFCAB13,ITGB3,MYL4"
TCGA.AA.A01Q.01A	17	45361791	45456485	23	-1.00E-04	NEUTRAL	NA	2	"EFCAB13,ITGB3"
TCGA.AZ.4684.01A	17	45425132	53037856	694	-0.1359	NEUTRAL	NA	87	"ABCC3,ABI3,ACSF2,ANKRD40,ATP5G1,B4GALNT2,C17orf112,CA10,CACNA1G,CALCOCO2,CBX1,CDK5RAP3,CHAD,COL1A1,COPZ2,DLX3,DLX4,EFCAB13,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,KAT7,KIF2B,KPNB1,LRRC46,LRRC59,LUC7L3,MBTD1,MRPL10,MRPL27,MYCBPAP,NFE2L1,NGFR,NME1,NME1-NME2,NME2,NPEPPS,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RSAD1,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPAG9,SPATA20,SPOP,TAC4,TBKBP1,TBX21,TMEM92,TOB1,TOM1L1,TTLL6,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.AA.A01Q.01A	17	45468782	45492153	9	-0.4099	NEUTRAL	NA	1	EFCAB13
TCGA.AA.A01Q.01A	17	45507145	45890595	33	0.1377	NEUTRAL	NA	6	"EFCAB13,KPNB1,NPEPPS,OSBPL7,TBKBP1,TBX21"
TCGA.AA.A00N.01A	17	45517759	45727532	24	0.1387	NEUTRAL	NA	3	"EFCAB13,KPNB1,NPEPPS"
TCGA.AG.3909.01A	17	45517759	45727532	23	0.1099	NEUTRAL	NA	3	"EFCAB13,KPNB1,NPEPPS"
TCGA.CK.5914.01A	17	45517759	45757349	41	-0.0856	NEUTRAL	NA	3	"EFCAB13,KPNB1,NPEPPS"
TCGA.AG.4009.01A	17	45646721	45664584	6	0.0503	NEUTRAL	NA	1	NPEPPS
TCGA.AA.A010.01A	17	45646721	45740398	26	0.2842	NEUTRAL	NA	2	"KPNB1,NPEPPS"
TCGA.AG.A00C.01A	17	45662844	56544194	839	0.1352	NEUTRAL	NA	117	Too-Many
TCGA.AA.3862.01A	17	45673687	45913335	68	-0.3775	NEUTRAL	NA	7	"KPNB1,LRRC46,MRPL10,NPEPPS,OSBPL7,TBKBP1,TBX21"
TCGA.AA.3861.01A	17	45673687	45973557	76	-0.1605	NEUTRAL	NA	10	"KPNB1,LRRC46,MRPL10,NPEPPS,OSBPL7,SCRN2,SP2,SP6,TBKBP1,TBX21"
TCGA.A6.3808.01A	17	45676992	56769986	974	0.1314	NEUTRAL	NA	122	Too-Many
TCGA.AG.3909.01A	17	45730009	46190616	109	-0.3469	NEUTRAL	NA	16	"CBX1,CDK5RAP3,COPZ2,KPNB1,LRRC46,MRPL10,NFE2L1,OSBPL7,PNPO,PRR15L,SCRN2,SNX11,SP2,SP6,TBKBP1,TBX21"
TCGA.AG.4009.01A	17	45742372	45759669	13	0.1642	NEUTRAL	NA	1	KPNB1
TCGA.CK.5914.01A	17	45757822	46190616	96	-0.4877	NEUTRAL	NA	16	"CBX1,CDK5RAP3,COPZ2,KPNB1,LRRC46,MRPL10,NFE2L1,OSBPL7,PNPO,PRR15L,SCRN2,SNX11,SP2,SP6,TBKBP1,TBX21"
TCGA.AG.4009.01A	17	45773472	45822417	13	-0.3944	NEUTRAL	NA	2	"TBKBP1,TBX21"
TCGA.AA.A00N.01A	17	45775949	45913335	35	-0.4486	NEUTRAL	NA	5	"LRRC46,MRPL10,OSBPL7,TBKBP1,TBX21"
TCGA.AA.A010.01A	17	45810782	45822417	6	-0.4972	NEUTRAL	NA	1	TBX21
TCGA.AA.A00Q.01A	17	45819926	46846333	103	0.0964	NEUTRAL	NA	28	"CBX1,CDK5RAP3,COPZ2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,LRRC46,MRPL10,NFE2L1,OSBPL7,PNPO,PRAC1,PRAC2,PRR15L,SCRN2,SKAP1,SNX11,SP2,SP6,TBX21,TTLL6"
TCGA.AF.A56L	17	45855955	63124302	4244	-0.5104	NEUTRAL	NA	184	Too-Many
TCGA.AA.A010.01A	17	45885616	45917586	30	0.2765	NEUTRAL	NA	4	"LRRC46,MRPL10,OSBPL7,SCRN2"
TCGA.AG.4009.01A	17	45885616	45917586	28	0.2509	NEUTRAL	NA	4	"LRRC46,MRPL10,OSBPL7,SCRN2"
TCGA.AA.A00N.01A	17	45913659	46018990	16	0.2248	NEUTRAL	NA	5	"LRRC46,PNPO,SCRN2,SP2,SP6"
TCGA.F5.6464	17	45960864	51923846	1595	-0.0218	NEUTRAL	NA	76	"ABCC3,ABI3,ACSF2,ANKRD40,ATP5G1,B4GALNT2,C17orf112,CA10,CACNA1G,CALCOCO2,CBX1,CDK5RAP3,CHAD,COL1A1,COPZ2,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,KAT7,KIF2B,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NFE2L1,NGFR,NME1,NME1-NME2,NME2,NXPH3,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RSAD1,SAMD14,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.AA.3862.01A	17	46021932	56693484	870	-0.3758	NEUTRAL	NA	111	Too-Many
TCGA.AA.3861.01A	17	46021932	57089639	896	-0.2328	NEUTRAL	NA	114	Too-Many
TCGA.AG.A00H.01A	17	46055140	81051974	3073	-0.2506	NEUTRAL	NA	403	Too-Many
TCGA.AA.A01Q.01A	17	46057919	46620378	33	0.0832	NEUTRAL	NA	8	"CBX1,CDK5RAP3,COPZ2,HOXB1,HOXB2,NFE2L1,SKAP1,SNX11"
TCGA.AG.4009.01A	17	46103730	46105761	2	0.2808	NEUTRAL	NA	1	COPZ2
TCGA.AF.3914.01A	17	46128454	46621873	31	-0.1867	NEUTRAL	NA	6	"CBX1,HOXB1,HOXB2,NFE2L1,SKAP1,SNX11"
TCGA.AA.A010.01A	17	46136225	46154176	5	-0.4955	NEUTRAL	NA	2	"CBX1,NFE2L1"
TCGA.AA.A010.01A	17	46189366	46607643	20	0.2661	NEUTRAL	NA	3	"HOXB1,SKAP1,SNX11"
TCGA.G5.6233	17	46237989	70205748	6573	0.1084	NEUTRAL	NA	201	Too-Many
TCGA.AA.3977	17	46260065	46372572	29	-0.1951	NEUTRAL	NA	1	SKAP1
TCGA.AA.3982	17	46261774	46337572	12	0.2178	NEUTRAL	NA	1	SKAP1
TCGA.AA.3977	17	46373670	49742141	790	0.2242	NEUTRAL	NA	66	"ABCC3,ABI3,ACSF2,ANKRD40,ATP5G1,B4GALNT2,CA10,CACNA1G,CALCOCO2,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,KAT7,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NGFR,NME1,NME1-NME2,NME2,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,PRAC1,PRAC2,RSAD1,SAMD14,SGCA,SKAP1,SLC35B1,SNF8,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.AA.3941	17	46389952	47190771	149	0.1217	NEUTRAL	NA	20	"ATP5G1,CALCOCO2,GIP,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,PRAC1,PRAC2,SKAP1,SNF8,TTLL6,UBE2Z"
TCGA.DM.A0XD	17	46500672	81006386	9430	0.0082	NEUTRAL	NA	397	Too-Many
TCGA.AG.4009.01A	17	46606860	46620378	3	0.0708	NEUTRAL	NA	2	"HOXB1,HOXB2"
TCGA.AA.3695	17	46644160	46954792	59	0.1002	NEUTRAL	NA	12	"CALCOCO2,HOXB13,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,PRAC1,PRAC2,TTLL6"
TCGA.AA.A00L.01A	17	46654037	46703078	12	0.2215	NEUTRAL	NA	6	"HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9"
TCGA.A6.6654	17	46667303	46753886	16	-0.3423	NEUTRAL	NA	5	"HOXB5,HOXB6,HOXB7,HOXB8,HOXB9"
TCGA.AG.3906.01A	17	46703078	46805358	4	0.199	NEUTRAL	NA	4	"HOXB13,HOXB9,PRAC1,PRAC2"
TCGA.AF.3914.01A	17	46703078	48166432	171	-0.1852	NEUTRAL	NA	28	"ABI3,ATP5G1,B4GALNT2,CALCOCO2,DLX3,DLX4,FAM117A,FLJ45513,GIP,GNGT2,HOXB13,HOXB9,IGF2BP1,ITGA3,KAT7,NGFR,NXPH3,PHB,PHOSPHO1,PRAC1,PRAC2,SLC35B1,SNF8,SPOP,TAC4,TTLL6,UBE2Z,ZNF652"
TCGA.AA.A01Z	17	46735519	55370682	2706	0.0045	NEUTRAL	NA	74	"ABCC3,ABI3,ACSF2,AKAP1,ANKFN1,ANKRD40,ATP5G1,B4GALNT2,C17orf112,C17orf67,CA10,CACNA1G,CALCOCO2,CHAD,COIL,COL1A1,COX11,DGKE,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,HLF,HOXB13,IGF2BP1,ITGA3,KAT7,KIF2B,LRRC59,LUC7L3,MBTD1,MMD,MRPL27,MSI2,MYCBPAP,NGFR,NME1,NME1-NME2,NME2,NOG,NXPH3,PCTP,PDK2,PHB,PHOSPHO1,PPP1R9B,PRAC1,PRAC2,RSAD1,SAMD14,SCPEP1,SGCA,SLC35B1,SNF8,SPAG9,SPATA20,SPOP,STXBP4,TAC4,TMEM100,TMEM92,TOB1,TOM1L1,TRIM25,TTLL6,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.A6.6654	17	46756890	81048658	9397	0.1258	NEUTRAL	NA	388	Too-Many
TCGA.AA.A010.01A	17	46799189	46940158	31	0.2356	NEUTRAL	NA	5	"CALCOCO2,HOXB13,PRAC1,PRAC2,TTLL6"
TCGA.AA.A01Q.01A	17	46804105	47572712	94	0.0458	NEUTRAL	NA	15	"ABI3,ATP5G1,B4GALNT2,CALCOCO2,GIP,GNGT2,HOXB13,IGF2BP1,NGFR,PHB,PHOSPHO1,SNF8,TTLL6,UBE2Z,ZNF652"
TCGA.CK.5914.01A	17	46846333	46940158	27	0.3569	NEUTRAL	NA	2	"CALCOCO2,TTLL6"
TCGA.AA.A00Q.01A	17	46847112	47288110	71	0.3682	NEUTRAL	NA	10	"ABI3,ATP5G1,B4GALNT2,CALCOCO2,GIP,GNGT2,IGF2BP1,SNF8,TTLL6,UBE2Z"
TCGA.AG.4009.01A	17	46862293	47021223	35	0.1889	NEUTRAL	NA	5	"ATP5G1,CALCOCO2,SNF8,TTLL6,UBE2Z"
TCGA.AG.3909.01A	17	46878610	46929820	8	0.0679	NEUTRAL	NA	2	"CALCOCO2,TTLL6"
TCGA.AA.3695	17	46959207	50136588	846	0.3626	NEUTRAL	NA	51	"ABCC3,ABI3,ACSF2,ANKRD40,ATP5G1,B4GALNT2,CA10,CACNA1G,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,IGF2BP1,ITGA3,KAT7,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NGFR,NME1,NME1-NME2,NME2,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,RSAD1,SAMD14,SGCA,SLC35B1,SNF8,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.AG.3909.01A	17	46970702	47021968	18	-0.3274	NEUTRAL	NA	3	"ATP5G1,SNF8,UBE2Z"
TCGA.CK.5914.01A	17	46970702	47785045	98	-0.258	NEUTRAL	NA	15	"ABI3,ATP5G1,B4GALNT2,GIP,GNGT2,IGF2BP1,NGFR,NXPH3,PHB,PHOSPHO1,SLC35B1,SNF8,SPOP,UBE2Z,ZNF652"
TCGA.AG.3906.01A	17	47007790	47126659	27	0.3384	NEUTRAL	NA	3	"GIP,IGF2BP1,SNF8"
TCGA.AG.A016.01A	17	47038199	48051013	98	0.3326	NEUTRAL	NA	17	"ABI3,B4GALNT2,DLX4,FAM117A,FLJ45513,GIP,GNGT2,IGF2BP1,KAT7,NGFR,NXPH3,PHB,PHOSPHO1,SLC35B1,SPOP,TAC4,ZNF652"
TCGA.AG.3909.01A	17	47121282	48145379	93	0.0184	NEUTRAL	NA	18	"ABI3,B4GALNT2,DLX3,DLX4,FAM117A,FLJ45513,GNGT2,IGF2BP1,ITGA3,KAT7,NGFR,NXPH3,PHB,PHOSPHO1,SLC35B1,SPOP,TAC4,ZNF652"
TCGA.AA.A00N.01A	17	47126659	47700035	52	-0.0039	NEUTRAL	NA	10	"ABI3,B4GALNT2,GNGT2,IGF2BP1,NGFR,NXPH3,PHB,PHOSPHO1,SPOP,ZNF652"
TCGA.AA.3941	17	47208075	49043347	447	0.1369	NEUTRAL	NA	40	"ABCC3,ABI3,ACSF2,ANKRD40,B4GALNT2,CACNA1G,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GNGT2,ITGA3,KAT7,LRRC59,LUC7L3,MRPL27,MYCBPAP,NGFR,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,RSAD1,SAMD14,SGCA,SLC35B1,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,WFIKKN2,XYLT2,ZNF652"
TCGA.AG.4009.01A	17	47230152	47700035	42	0.2803	NEUTRAL	NA	9	"ABI3,B4GALNT2,GNGT2,NGFR,NXPH3,PHB,PHOSPHO1,SPOP,ZNF652"
TCGA.AA.A02O	17	47254910	56221127	2931	-0.0031	NEUTRAL	NA	69	"ABCC3,ABI3,ACSF2,AKAP1,ANKFN1,ANKRD40,C17orf112,C17orf67,CA10,CACNA1G,CCDC182,CHAD,COIL,COL1A1,COX11,CUEDC1,DGKE,DLX3,DLX4,DYNLL2,EME1,EPN3,FAM117A,FLJ45513,GNGT2,HLF,ITGA3,KAT7,KIF2B,LRRC59,LUC7L3,MBTD1,MMD,MRPL27,MRPS23,MSI2,MYCBPAP,NGFR,NME1,NME1-NME2,NME2,NOG,NXPH3,PCTP,PDK2,PHB,PHOSPHO1,PPP1R9B,RSAD1,SAMD14,SCPEP1,SGCA,SLC35B1,SPAG9,SPATA20,SPOP,SRSF1,STXBP4,TAC4,TMEM100,TMEM92,TOB1,TOM1L1,TRIM25,UTP18,VEZF1,WFIKKN2,XYLT2,ZNF652"
TCGA.AA.A00Q.01A	17	47293844	48764850	258	0.1262	NEUTRAL	NA	33	"ABCC3,ABI3,ACSF2,CACNA1G,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,ITGA3,KAT7,LRRC59,MRPL27,MYCBPAP,NGFR,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,RSAD1,SAMD14,SGCA,SLC35B1,SPATA20,SPOP,TAC4,TMEM92,XYLT2,ZNF652"
TCGA.CM.6166	17	47383944	52711911	1459	0.009	NEUTRAL	NA	44	"ABCC3,ACSF2,ANKRD40,C17orf112,CA10,CACNA1G,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,ITGA3,KAT7,KIF2B,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NGFR,NME1,NME1-NME2,NME2,NXPH3,PDK2,PHB,PPP1R9B,RSAD1,SAMD14,SGCA,SLC35B1,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.F5.6863	17	47419660	81048658	9254	-0.0416	NEUTRAL	NA	374	Too-Many
TCGA.AA.A01Q.01A	17	47653532	47700035	10	0.2834	NEUTRAL	NA	2	"NXPH3,SPOP"
TCGA.AG.A01L.01A	17	47783147	81051974	3012	-0.4574	NEUTRAL	NA	369	Too-Many
TCGA.AA.A024.01A	17	47799811	81051974	3115	0.0941	NEUTRAL	NA	368	Too-Many
TCGA.AG.4009.01A	17	47809873	47917143	17	0.2996	NEUTRAL	NA	3	"FAM117A,KAT7,TAC4"
TCGA.AA.A01Q.01A	17	47869200	48165592	41	-0.1307	NEUTRAL	NA	6	"DLX3,DLX4,FLJ45513,ITGA3,KAT7,TAC4"
TCGA.AG.4009.01A	17	47918829	48072041	9	-0.3581	NEUTRAL	NA	4	"DLX3,DLX4,FLJ45513,TAC4"
TCGA.CK.5914.01A	17	47925209	48278731	83	-0.4932	NEUTRAL	NA	10	"COL1A1,DLX3,DLX4,FLJ45513,ITGA3,PDK2,PPP1R9B,SAMD14,SGCA,TAC4"
TCGA.AG.A016.01A	17	48068870	48165068	19	-0.0396	NEUTRAL	NA	2	"DLX3,ITGA3"
TCGA.AA.A010.01A	17	48070734	48182683	26	0.1467	NEUTRAL	NA	3	"DLX3,ITGA3,PDK2"
TCGA.AA.A010.01A	17	48183227	48195477	11	-0.3797	NEUTRAL	NA	2	"PDK2,SAMD14"
TCGA.AA.A01Q.01A	17	48212899	48245005	8	0.2172	NEUTRAL	NA	2	"PPP1R9B,SGCA"
TCGA.AG.A016.01A	17	48212899	48269785	28	0.2791	NEUTRAL	NA	3	"COL1A1,PPP1R9B,SGCA"
TCGA.AG.4009.01A	17	48217440	48226459	4	-0.2295	NEUTRAL	NA	1	PPP1R9B
TCGA.AG.3909.01A	17	48217440	48269785	26	-0.2247	NEUTRAL	NA	3	"COL1A1,PPP1R9B,SGCA"
TCGA.AA.A00N.01A	17	48226459	48273259	25	-0.1328	NEUTRAL	NA	3	"COL1A1,PPP1R9B,SGCA"
TCGA.AG.4009.01A	17	48243334	48252570	8	0.1615	NEUTRAL	NA	1	SGCA
TCGA.AF.3914.01A	17	48243334	48538554	64	-0.2698	NEUTRAL	NA	8	"ACSF2,COL1A1,EME1,LRRC59,MRPL27,SGCA,TMEM92,XYLT2"
TCGA.AA.A01Q.01A	17	48245248	48268722	16	-0.3048	NEUTRAL	NA	2	"COL1A1,SGCA"
TCGA.AA.A010.01A	17	48252570	48356509	27	0.3013	NEUTRAL	NA	3	"COL1A1,SGCA,TMEM92"
TCGA.AG.3909.01A	17	48276540	48435547	15	-0.3728	NEUTRAL	NA	3	"COL1A1,TMEM92,XYLT2"
TCGA.AA.A00N.01A	17	48276540	48465368	31	-0.2066	NEUTRAL	NA	6	"COL1A1,EME1,LRRC59,MRPL27,TMEM92,XYLT2"
TCGA.G4.6626	17	48326311	49907912	459	0.1892	NEUTRAL	NA	24	"ABCC3,ACSF2,ANKRD40,CA10,CACNA1G,CHAD,EME1,EPN3,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NME1,NME1-NME2,NME2,RSAD1,SPAG9,SPATA20,TMEM92,TOB1,UTP18,WFIKKN2,XYLT2"
TCGA.AG.4009.01A	17	48351797	48437290	13	0.0021	NEUTRAL	NA	2	"TMEM92,XYLT2"
TCGA.CK.5914.01A	17	48351797	48543019	43	-0.0192	NEUTRAL	NA	7	"ACSF2,CHAD,EME1,LRRC59,MRPL27,TMEM92,XYLT2"
TCGA.AG.3909.01A	17	48437290	48462467	14	0.094	NEUTRAL	NA	4	"EME1,LRRC59,MRPL27,XYLT2"
TCGA.AG.A016.01A	17	48447326	48538006	18	0.0277	NEUTRAL	NA	4	"ACSF2,EME1,LRRC59,MRPL27"
TCGA.AA.A01Q.01A	17	48450423	48585869	40	-0.1777	NEUTRAL	NA	7	"ACSF2,CHAD,EME1,LRRC59,MRPL27,MYCBPAP,RSAD1"
TCGA.AA.A010.01A	17	48450423	54671564	306	-0.1329	NEUTRAL	NA	33	"ABCC3,ACSF2,ANKFN1,ANKRD40,C17orf112,CA10,CACNA1G,CHAD,COX11,EME1,EPN3,HLF,KIF2B,LRRC59,LUC7L3,MBTD1,MMD,MRPL27,MYCBPAP,NME1,NME1-NME2,NME2,NOG,PCTP,RSAD1,SPAG9,SPATA20,STXBP4,TMEM100,TOB1,TOM1L1,UTP18,WFIKKN2"
TCGA.AG.3909.01A	17	48465368	48541128	12	-0.396	NEUTRAL	NA	2	"ACSF2,LRRC59"
TCGA.AA.A01F.01A	17	48538006	54526411	225	-0.2907	NEUTRAL	NA	29	"ABCC3,ACSF2,ANKFN1,ANKRD40,C17orf112,CA10,CACNA1G,CHAD,COX11,EPN3,HLF,KIF2B,LUC7L3,MBTD1,MMD,MYCBPAP,NME1,NME1-NME2,NME2,PCTP,RSAD1,SPAG9,SPATA20,STXBP4,TMEM100,TOB1,TOM1L1,UTP18,WFIKKN2"
TCGA.AG.4009.01A	17	48593902	48608641	16	0.0923	NEUTRAL	NA	1	MYCBPAP
TCGA.AA.A00A.01A	17	48608641	48742470	28	0.0838	NEUTRAL	NA	5	"ABCC3,CACNA1G,EPN3,MYCBPAP,SPATA20"
TCGA.AG.4009.01A	17	48613870	48628852	15	-0.3736	NEUTRAL	NA	2	"EPN3,SPATA20"
TCGA.AG.A016.01A	17	48619178	48652855	15	-0.0493	NEUTRAL	NA	3	"CACNA1G,EPN3,SPATA20"
TCGA.AA.A01Q.01A	17	48629283	48777878	49	-0.1931	NEUTRAL	NA	4	"ABCC3,ANKRD40,CACNA1G,SPATA20"
TCGA.AG.4009.01A	17	48631595	48649190	6	0.1653	NEUTRAL	NA	2	"CACNA1G,SPATA20"
TCGA.AA.A00D.01A	17	48631595	48755417	24	0.0752	NEUTRAL	NA	3	"ABCC3,CACNA1G,SPATA20"
TCGA.AF.3914.01A	17	48649190	56387286	355	-0.263	NEUTRAL	NA	44	"ABCC3,AKAP1,ANKFN1,ANKRD40,BZRAP1,C17orf112,C17orf67,CA10,CACNA1G,CCDC182,COIL,COX11,CUEDC1,DGKE,DYNLL2,EPX,HLF,KIF2B,LPO,LUC7L3,MBTD1,MKS1,MMD,MPO,MRPS23,MSI2,NME1,NME1-NME2,NME2,NOG,OR4D1,OR4D2,PCTP,SCPEP1,SPAG9,SRSF1,STXBP4,TMEM100,TOB1,TOM1L1,TRIM25,UTP18,VEZF1,WFIKKN2"
TCGA.AG.A016.01A	17	48684207	61959060	994	0.3049	NEUTRAL	NA	101	Too-Many
TCGA.AG.3909.01A	17	48696997	48703330	4	-0.1327	NEUTRAL	NA	1	CACNA1G
TCGA.AG.4009.01A	17	48764850	49197668	48	0.2404	NEUTRAL	NA	6	"ABCC3,ANKRD40,LUC7L3,SPAG9,TOB1,WFIKKN2"
TCGA.AG.3909.01A	17	48768436	49232983	49	0.1719	NEUTRAL	NA	8	"ABCC3,ANKRD40,LUC7L3,NME1,NME1-NME2,SPAG9,TOB1,WFIKKN2"
TCGA.AA.A00N.01A	17	48768436	53498975	149	0.037	NEUTRAL	NA	19	"ABCC3,ANKRD40,C17orf112,CA10,COX11,HLF,KIF2B,LUC7L3,MBTD1,MMD,NME1,NME1-NME2,NME2,SPAG9,STXBP4,TOB1,TOM1L1,UTP18,WFIKKN2"
TCGA.AA.A01Q.01A	17	48784833	55334368	194	0.1734	NEUTRAL	NA	29	"AKAP1,ANKFN1,ANKRD40,C17orf112,C17orf67,CA10,COIL,COX11,DGKE,HLF,KIF2B,LUC7L3,MBTD1,MMD,MSI2,NME1,NME1-NME2,NME2,NOG,PCTP,SCPEP1,SPAG9,STXBP4,TMEM100,TOB1,TOM1L1,TRIM25,UTP18,WFIKKN2"
TCGA.CK.5914.01A	17	49043591	49124687	27	0.3722	NEUTRAL	NA	1	SPAG9
TCGA.AA.3941	17	49043897	49931597	283	-0.2933	NEUTRAL	NA	7	"CA10,MBTD1,NME1,NME1-NME2,NME2,SPAG9,UTP18"
TCGA.AZ.6607	17	49043897	72154232	6750	-0.0734	NEUTRAL	NA	151	Too-Many
TCGA.AG.4009.01A	17	49231674	49248798	9	-0.4694	NEUTRAL	NA	3	"NME1,NME1-NME2,NME2"
TCGA.CK.5914.01A	17	49269516	51900345	41	0.1572	NEUTRAL	NA	5	"C17orf112,CA10,KIF2B,MBTD1,UTP18"
TCGA.AG.4009.01A	17	49270086	49280467	7	0.2329	NEUTRAL	NA	1	MBTD1
TCGA.AG.3909.01A	17	49270086	54559677	105	0.2383	NEUTRAL	NA	13	"ANKFN1,C17orf112,CA10,COX11,HLF,KIF2B,MBTD1,MMD,PCTP,STXBP4,TMEM100,TOM1L1,UTP18"
TCGA.AG.4009.01A	17	49281123	49353180	8	-0.2378	NEUTRAL	NA	2	"MBTD1,UTP18"
TCGA.AA.3968	17	49320629	49699918	130	0.2124	NEUTRAL	NA	2	"MBTD1,UTP18"
TCGA.AG.4009.01A	17	49354464	54671564	88	0.337	NEUTRAL	NA	13	"ANKFN1,C17orf112,CA10,COX11,HLF,KIF2B,MMD,NOG,PCTP,STXBP4,TMEM100,TOM1L1,UTP18"
TCGA.AA.3850	17	49481249	49908913	186	0.01755	NEUTRAL	NA	1	CA10
TCGA.AA.3811	17	49489982	49909328	184	-0.072	NEUTRAL	NA	1	CA10
TCGA.AA.3872	17	49575743	54163635	1565	-0.0233	NEUTRAL	NA	10	"C17orf112,CA10,COX11,HLF,KIF2B,MMD,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.AG.3902	17	49593251	58521038	2666	-0.402	NEUTRAL	NA	59	"AKAP1,ANKFN1,APPBP2,BZRAP1,C17orf112,C17orf47,C17orf64,C17orf67,CA10,CA4,CCDC182,CLTC,COIL,COX11,CUEDC1,DGKE,DHX40,DYNLL2,EPX,GDPD1,HEATR6,HLF,HSF5,KIF2B,LPO,MKS1,MMD,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PCTP,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SCPEP1,SEPT4,SKA2,SMG8,SRSF1,STXBP4,SUPT4H1,TEX14,TMEM100,TOM1L1,TRIM25,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.AA.3982	17	49662909	50029667	189	0.1117	NEUTRAL	NA	1	CA10
TCGA.AA.3844	17	49696741	52764599	923	-0.4901	NEUTRAL	NA	3	"C17orf112,CA10,KIF2B"
TCGA.AA.3968	17	49707250	51564459	641	-0.0701	NEUTRAL	NA	2	"C17orf112,CA10"
TCGA.AA.3667	17	49714220	49908913	111	0.0267	NEUTRAL	NA	1	CA10
TCGA.AA.3977	17	49742552	53967676	1391	-0.0704	NEUTRAL	NA	10	"C17orf112,CA10,COX11,HLF,KIF2B,MMD,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.AG.3891.01A	17	49824952	52978169	7	-0.4651	NEUTRAL	NA	4	"C17orf112,CA10,KIF2B,TOM1L1"
TCGA.AA.3854	17	49849207	57082012	2375	-0.0255	NEUTRAL	NA	42	"AKAP1,ANKFN1,BZRAP1,C17orf112,C17orf47,C17orf67,CA10,CCDC182,COIL,COX11,CUEDC1,DGKE,DYNLL2,EPX,HLF,HSF5,KIF2B,LPO,MKS1,MMD,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PCTP,PPM1E,RAD51C,RNF43,SCPEP1,SEPT4,SRSF1,STXBP4,SUPT4H1,TEX14,TMEM100,TOM1L1,TRIM25,TRIM37,VEZF1"
TCGA.G4.6626	17	49911621	81048658	8612	0.1692	NEUTRAL	NA	333	Too-Many
TCGA.AA.3667	17	49914584	52316823	710	-0.0953	NEUTRAL	NA	3	"C17orf112,CA10,KIF2B"
TCGA.AA.3693	17	49914584	81048658	8613	0.0766	NEUTRAL	NA	333	Too-Many
TCGA.DC.6682	17	49947700	50395538	162	0.0561	NEUTRAL	NA	1	CA10
TCGA.AY.A8YK	17	49999484	50247137	83	-0.0982	NEUTRAL	NA	1	CA10
TCGA.AA.3982	17	50032766	52890787	800	-0.3157	NEUTRAL	NA	3	"C17orf112,CA10,KIF2B"
TCGA.AA.3867	17	50035503	52870255	790	-0.0538	NEUTRAL	NA	3	"C17orf112,CA10,KIF2B"
TCGA.AA.3695	17	50140903	59528286	2619	0.0323	NEUTRAL	NA	63	"AKAP1,ANKFN1,APPBP2,BCAS3,BZRAP1,C17orf112,C17orf47,C17orf64,C17orf67,C17orf82,CA10,CA4,CCDC182,CLTC,COIL,COX11,CUEDC1,DGKE,DHX40,DYNLL2,EPX,GDPD1,HEATR6,HLF,HSF5,KIF2B,LPO,MKS1,MMD,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PCTP,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SCPEP1,SEPT4,SKA2,SMG8,SRSF1,STXBP4,SUPT4H1,TBX2,TEX14,TMEM100,TOM1L1,TRIM25,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.AY.A8YK	17	50251031	50407776	60	0.3114	NEUTRAL	NA	0	None
TCGA.NH.A50V	17	50384304	50530327	41	0.0878	NEUTRAL	NA	0	None
TCGA.AY.A8YK	17	50414898	52772579	625	-0.1196	NEUTRAL	NA	2	"C17orf112,KIF2B"
TCGA.DC.6682	17	50599382	54364662	1241	0.1003	NEUTRAL	NA	10	"ANKFN1,C17orf112,COX11,HLF,KIF2B,MMD,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.G4.6322	17	50628255	52297875	456	-0.455	NEUTRAL	NA	2	"C17orf112,KIF2B"
TCGA.DM.A1D0	17	50671031	70393079	5470	0.266	NEUTRAL	NA	135	Too-Many
TCGA.NH.A50V	17	51690805	81048658	8007	-0.0387	NEUTRAL	NA	331	Too-Many
TCGA.CK.5914.01A	17	51901033	53076659	24	-0.3231	NEUTRAL	NA	4	"COX11,KIF2B,STXBP4,TOM1L1"
TCGA.F5.6464	17	51930055	56938557	1723	-0.4457	NEUTRAL	NA	38	"AKAP1,ANKFN1,BZRAP1,C17orf47,C17orf67,CCDC182,COIL,COX11,CUEDC1,DGKE,DYNLL2,EPX,HLF,HSF5,LPO,MKS1,MMD,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PCTP,PPM1E,RAD51C,RNF43,SCPEP1,SEPT4,SRSF1,STXBP4,SUPT4H1,TEX14,TMEM100,TOM1L1,TRIM25,VEZF1"
TCGA.AA.3870	17	51938689	52287258	85	-0.3197	NEUTRAL	NA	0	None
TCGA.AA.3968	17	51956362	53694890	563	0.0019	NEUTRAL	NA	5	"COX11,HLF,MMD,STXBP4,TOM1L1"
TCGA.AG.3731	17	52097649	52464994	62	-0.3143	NEUTRAL	NA	0	None
TCGA.AA.3655	17	52144151	81048658	7931	-0.0038	NEUTRAL	NA	330	Too-Many
TCGA.AA.3870	17	52297619	81048658	7904	0.0812	NEUTRAL	NA	330	Too-Many
TCGA.G4.6322	17	52303310	67584595	3951	0.0363	NEUTRAL	NA	130	Too-Many
TCGA.F4.6809	17	52355509	53670688	456	-0.0239	NEUTRAL	NA	5	"COX11,HLF,MMD,STXBP4,TOM1L1"
TCGA.AA.3517	17	52360098	54740203	932	0.0292	NEUTRAL	NA	9	"ANKFN1,COX11,HLF,MMD,NOG,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.AA.3667	17	52447856	81048658	7888	0.0217	NEUTRAL	NA	330	Too-Many
TCGA.AG.3731	17	52470063	55188149	1079	0.0069	NEUTRAL	NA	15	"AKAP1,ANKFN1,C17orf67,COIL,COX11,DGKE,HLF,MMD,NOG,PCTP,SCPEP1,STXBP4,TMEM100,TOM1L1,TRIM25"
TCGA.AH.6643	17	52485876	52890787	120	0.1184	NEUTRAL	NA	0	None
TCGA.G4.6295	17	52596966	54634767	856	0.0243	NEUTRAL	NA	8	"ANKFN1,COX11,HLF,MMD,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.AA.3844	17	52787711	66685033	3560	0.0199	NEUTRAL	NA	124	Too-Many
TCGA.AF.2689	17	52830105	52963854	79	0.1442	NEUTRAL	NA	0	None
TCGA.AA.3867	17	52870513	63394759	2524	0.2586	NEUTRAL	NA	104	Too-Many
TCGA.AA.3850	17	52885334	54585659	736	-0.14355	NEUTRAL	NA	8	"ANKFN1,COX11,HLF,MMD,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.AA.3811	17	52906467	53187495	103	-0.0764	NEUTRAL	NA	3	"COX11,STXBP4,TOM1L1"
TCGA.AA.3982	17	52906467	53187495	103	0.2346	NEUTRAL	NA	3	"COX11,STXBP4,TOM1L1"
TCGA.AA.3941	17	52906467	54163635	554	-0.4438	NEUTRAL	NA	7	"COX11,HLF,MMD,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.AH.6643	17	52906467	55438555	1075	-0.3647	NEUTRAL	NA	16	"AKAP1,ANKFN1,C17orf67,COIL,COX11,DGKE,HLF,MMD,MSI2,NOG,PCTP,SCPEP1,STXBP4,TMEM100,TOM1L1,TRIM25"
TCGA.AG.3891.01A	17	52981015	54671564	70	-0.0052	NEUTRAL	NA	9	"ANKFN1,COX11,HLF,MMD,NOG,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.4N.A93T	17	53010380	57800387	1530	-0.0469	NEUTRAL	NA	48	"AKAP1,ANKFN1,BZRAP1,C17orf47,C17orf67,CCDC182,CLTC,COIL,COX11,CUEDC1,DGKE,DHX40,DYNLL2,EPX,GDPD1,HLF,HSF5,LPO,MKS1,MMD,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PCTP,PPM1E,PRR11,PTRH2,RAD51C,RNF43,SCPEP1,SEPT4,SKA2,SMG8,SRSF1,STXBP4,SUPT4H1,TEX14,TMEM100,TOM1L1,TRIM25,TRIM37,VEZF1,VMP1,YPEL2"
TCGA.CK.5914.01A	17	53076950	53397974	18	0.333	NEUTRAL	NA	2	"HLF,STXBP4"
TCGA.AF.2692	17	53100482	54163046	459	0.3734	NEUTRAL	NA	5	"HLF,MMD,PCTP,STXBP4,TMEM100"
TCGA.AA.3982	17	53201929	53967676	349	0.1892	NEUTRAL	NA	5	"HLF,MMD,PCTP,STXBP4,TMEM100"
TCGA.AA.3811	17	53201929	54589619	628	-0.1938	NEUTRAL	NA	6	"ANKFN1,HLF,MMD,PCTP,STXBP4,TMEM100"
TCGA.AA.3509.01A	17	53342804	54403532	21	-0.2068	NEUTRAL	NA	5	"ANKFN1,HLF,MMD,PCTP,TMEM100"
TCGA.AZ.4684.01A	17	53342804	54403532	21	-0.1848	NEUTRAL	NA	5	"ANKFN1,HLF,MMD,PCTP,TMEM100"
TCGA.CK.5914.01A	17	53471648	53491456	6	-0.4323	NEUTRAL	NA	1	MMD
TCGA.DM.A0XF	17	53489000	81048658	7517	-0.3425	NEUTRAL	NA	326	Too-Many
TCGA.AF.2689	17	53531973	56189338	1119	0.0338	NEUTRAL	NA	17	"AKAP1,ANKFN1,C17orf67,CCDC182,COIL,CUEDC1,DGKE,DYNLL2,MRPS23,MSI2,NOG,PCTP,SCPEP1,SRSF1,TMEM100,TRIM25,VEZF1"
TCGA.F4.6704	17	53607748	81048658	7469	-0.3542	NEUTRAL	NA	325	Too-Many
TCGA.F4.6809	17	53672965	81048658	7419	-0.4559	NEUTRAL	NA	325	Too-Many
TCGA.AY.A8YK	17	53831124	54204408	184	-0.1203	NEUTRAL	NA	1	PCTP
TCGA.D5.6532	17	53885261	67557112	3374	-0.0136	NEUTRAL	NA	123	Too-Many
TCGA.AA.3982	17	53973002	54097058	40	-0.0875	NEUTRAL	NA	0	None
TCGA.AA.3977	17	53974011	54050661	26	-0.1093	NEUTRAL	NA	0	None
TCGA.AA.3977	17	54054524	81048658	7250	0.1549	NEUTRAL	NA	323	Too-Many
TCGA.AA.3982	17	54110847	54163591	45	0.2844	NEUTRAL	NA	0	None
TCGA.AA.A01S	17	54163046	54164360	5	-0.49915	NEUTRAL	NA	0	None
TCGA.AF.2692	17	54163591	54177820	11	-0.373	NEUTRAL	NA	0	None
TCGA.AA.3982	17	54164934	54583107	173	-0.0033	NEUTRAL	NA	1	ANKFN1
TCGA.AA.3872	17	54164934	81048658	7195	0.0828	NEUTRAL	NA	323	Too-Many
TCGA.AA.3673	17	54172276	69608973	4013	-0.1819	NEUTRAL	NA	125	Too-Many
TCGA.AD.6890	17	54173462	72860653	5275	0.2592	NEUTRAL	NA	155	Too-Many
TCGA.DC.4745	17	54173462	81048658	7199	-0.0742	NEUTRAL	NA	323	Too-Many
TCGA.F5.6702	17	54173462	81048658	7172	0.0072	NEUTRAL	NA	323	Too-Many
TCGA.AF.2692	17	54177981	67552889	3228	0.3608	NEUTRAL	NA	123	Too-Many
TCGA.DC.6681	17	54238055	81048658	7158	-0.0286	NEUTRAL	NA	323	Too-Many
TCGA.AY.A71X	17	54421397	81048658	7081	-0.0608	NEUTRAL	NA	323	Too-Many
TCGA.AA.3509.01A	17	54520161	56619128	225	-0.0521	NEUTRAL	NA	28	"AKAP1,ANKFN1,BZRAP1,C17orf47,C17orf67,CCDC182,COIL,CUEDC1,DGKE,DYNLL2,EPX,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,RNF43,SCPEP1,SEPT4,SRSF1,SUPT4H1,TRIM25,VEZF1"
TCGA.AZ.4684.01A	17	54520161	56769986	261	-0.129	NEUTRAL	NA	30	"AKAP1,ANKFN1,BZRAP1,C17orf47,C17orf67,CCDC182,COIL,CUEDC1,DGKE,DYNLL2,EPX,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,RAD51C,RNF43,SCPEP1,SEPT4,SRSF1,SUPT4H1,TEX14,TRIM25,VEZF1"
TCGA.AA.3850	17	54589397	63732196	1884	0.30495	NEUTRAL	NA	98	"ACE,AKAP1,APPBP2,AXIN2,BCAS3,BRIP1,BZRAP1,C17orf47,C17orf64,C17orf67,C17orf82,CA4,CCDC182,CCDC47,CD79B,CEP112,CEP95,CLTC,COIL,CSH1,CSH2,CSHL1,CUEDC1,CYB561,DCAF7,DDX42,DDX5,DGKE,DHX40,DYNLL2,EFCAB3,EPX,ERN1,FTSJ3,GDPD1,GH1,GH2,GNA13,HEATR6,HSF5,ICAM2,INTS2,KCNH6,LIMD2,LPO,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MKS1,MPO,MRC2,MRPS23,MSI2,MTMR4,NACA2,NOG,OR4D1,OR4D2,PECAM1,POLG2,PPM1D,PPM1E,PRR11,PRR29,PSMC5,PTRH2,RAD51C,RGS9,RNF43,RNFT1,RPS6KB1,SCN4A,SCPEP1,SEPT4,SKA2,SMARCD2,SMG8,SMURF2,SRSF1,STRADA,SUPT4H1,TACO1,TANC2,TBX2,TBX4,TEX14,TEX2,TLK2,TRIM25,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.AA.3941	17	54589397	66808388	2841	-0.03	NEUTRAL	NA	116	Too-Many
TCGA.AA.3811	17	54597548	66815067	2850	0.1281	NEUTRAL	NA	116	Too-Many
TCGA.AG.3725	17	54597548	72152009	4897	-0.0239	NEUTRAL	NA	134	Too-Many
TCGA.G4.6295	17	54638947	75843973	5846	-0.3752	NEUTRAL	NA	221	Too-Many
TCGA.AG.3909.01A	17	54671564	54978742	20	-0.0474	NEUTRAL	NA	4	"C17orf67,DGKE,NOG,TRIM25"
TCGA.CK.5914.01A	17	54671564	56619938	216	-0.4368	NEUTRAL	NA	27	"AKAP1,BZRAP1,C17orf47,C17orf67,CCDC182,COIL,CUEDC1,DGKE,DYNLL2,EPX,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,RNF43,SCPEP1,SEPT4,SRSF1,SUPT4H1,TRIM25,VEZF1"
TCGA.AA.A01F.01A	17	54671564	58148029	385	-0.3056	NEUTRAL	NA	44	"AKAP1,BZRAP1,C17orf47,C17orf67,CCDC182,CLTC,COIL,CUEDC1,DGKE,DHX40,DYNLL2,EPX,GDPD1,HEATR6,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SCPEP1,SEPT4,SKA2,SMG8,SRSF1,SUPT4H1,TEX14,TRIM25,TRIM37,TUBD1,VEZF1,VMP1,YPEL2"
TCGA.DM.A1HB	17	54780862	55697802	355	0.0708	NEUTRAL	NA	7	"AKAP1,C17orf67,COIL,DGKE,MSI2,SCPEP1,TRIM25"
TCGA.AA.3517	17	54858578	56426788	555	0.0128	NEUTRAL	NA	21	"AKAP1,BZRAP1,C17orf67,CCDC182,COIL,CUEDC1,DGKE,DYNLL2,EPX,LPO,MKS1,MPO,MRPS23,MSI2,OR4D1,OR4D2,SCPEP1,SRSF1,SUPT4H1,TRIM25,VEZF1"
TCGA.AG.4009.01A	17	54872418	54923004	6	-0.3325	NEUTRAL	NA	2	"C17orf67,DGKE"
TCGA.AG.3891.01A	17	54921331	56428716	159	0.1346	NEUTRAL	NA	20	"AKAP1,BZRAP1,CCDC182,COIL,CUEDC1,DGKE,DYNLL2,EPX,LPO,MKS1,MPO,MRPS23,MSI2,OR4D1,OR4D2,SCPEP1,SRSF1,SUPT4H1,TRIM25,VEZF1"
TCGA.AG.4009.01A	17	54925256	54939951	8	0.1228	NEUTRAL	NA	1	DGKE
TCGA.AA.A010.01A	17	54969022	55944647	59	0.3454	NEUTRAL	NA	8	"AKAP1,CCDC182,COIL,CUEDC1,MRPS23,MSI2,SCPEP1,TRIM25"
TCGA.AG.3909.01A	17	54981619	55058391	10	-0.5082	NEUTRAL	NA	3	"COIL,SCPEP1,TRIM25"
TCGA.AG.4009.01A	17	54990726	55197552	30	0.1629	NEUTRAL	NA	4	"AKAP1,COIL,SCPEP1,TRIM25"
TCGA.AG.3909.01A	17	55062718	55197552	22	0.1622	NEUTRAL	NA	2	"AKAP1,SCPEP1"
TCGA.AG.3731	17	55188372	55336154	65	-0.3513	NEUTRAL	NA	2	"AKAP1,MSI2"
TCGA.AG.3581	17	55329212	55567751	132	-0.0681	NEUTRAL	NA	1	MSI2
TCGA.AA.A01Q.01A	17	55334811	56060102	31	-0.463	NEUTRAL	NA	5	"CCDC182,CUEDC1,MRPS23,MSI2,VEZF1"
TCGA.AG.3731	17	55336267	55482336	76	0.0277	NEUTRAL	NA	1	MSI2
TCGA.AH.6643	17	55440183	56802058	398	0.0933	NEUTRAL	NA	22	"BZRAP1,C17orf47,CCDC182,CUEDC1,DYNLL2,EPX,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,OR4D1,OR4D2,RAD51C,RNF43,SEPT4,SRSF1,SUPT4H1,TEX14,VEZF1"
TCGA.AG.3731	17	55492465	56629526	360	-0.3415	NEUTRAL	NA	20	"BZRAP1,C17orf47,CCDC182,CUEDC1,DYNLL2,EPX,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,OR4D1,OR4D2,RNF43,SEPT4,SRSF1,SUPT4H1,VEZF1"
TCGA.AA.3968	17	55501830	55526117	19	-0.0582	NEUTRAL	NA	1	MSI2
TCGA.AA.3968	17	55540245	61850300	1033	0.0961	NEUTRAL	NA	65	"ACE,APPBP2,BCAS3,BRIP1,BZRAP1,C17orf47,C17orf64,C17orf82,CA4,CCDC182,CCDC47,CLTC,CUEDC1,CYB561,DCAF7,DHX40,DYNLL2,EFCAB3,EPX,GDPD1,HEATR6,HSF5,INTS2,KCNH6,LIMD2,LPO,MAP3K3,MARCH10,MED13,METTL2A,MKS1,MPO,MRC2,MRPS23,MSI2,MTMR4,NACA2,OR4D1,OR4D2,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SEPT4,SKA2,SMG8,SRSF1,STRADA,SUPT4H1,TACO1,TANC2,TBX2,TBX4,TEX14,TLK2,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.CM.4746	17	55621596	81048658	6576	-0.0262	NEUTRAL	NA	315	Too-Many
TCGA.DM.A1HB	17	55731349	64889578	1781	0.0515	NEUTRAL	NA	94	"ACE,APOH,APPBP2,AXIN2,BCAS3,BRIP1,BZRAP1,C17orf47,C17orf64,C17orf82,CA4,CACNG5,CCDC182,CCDC47,CD79B,CEP112,CEP95,CLTC,CSH1,CSH2,CSHL1,CUEDC1,CYB561,DCAF7,DDX42,DDX5,DHX40,DYNLL2,EFCAB3,EPX,ERN1,FTSJ3,GDPD1,GH1,GH2,GNA13,HEATR6,HSF5,ICAM2,INTS2,KCNH6,LIMD2,LPO,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MKS1,MPO,MRC2,MRPS23,MSI2,MTMR4,NACA2,OR4D1,OR4D2,PECAM1,POLG2,PPM1D,PPM1E,PRKCA,PRR11,PRR29,PSMC5,PTRH2,RAD51C,RGS9,RNF43,RNFT1,RPS6KB1,SCN4A,SEPT4,SKA2,SMARCD2,SMG8,SMURF2,SRSF1,STRADA,SUPT4H1,TACO1,TANC2,TBX2,TBX4,TEX14,TEX2,TLK2,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.AG.3594	17	55900319	81048658	6465	0.027	NEUTRAL	NA	313	Too-Many
TCGA.AG.4009.01A	17	55917092	56232485	23	-0.4484	NEUTRAL	NA	5	"CUEDC1,DYNLL2,MRPS23,SRSF1,VEZF1"
TCGA.EF.5830	17	55988235	63250333	1117	-0.083	NEUTRAL	NA	86	"ACE,APPBP2,BCAS3,BRIP1,BZRAP1,C17orf47,C17orf64,C17orf82,CA4,CCDC47,CD79B,CEP95,CLTC,CSH1,CSH2,CSHL1,CUEDC1,CYB561,DCAF7,DDX42,DDX5,DHX40,DYNLL2,EFCAB3,EPX,ERN1,FTSJ3,GDPD1,GH1,GH2,GNA13,HEATR6,HSF5,ICAM2,INTS2,KCNH6,LIMD2,LPO,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MKS1,MPO,MRC2,MTMR4,NACA2,OR4D1,OR4D2,PECAM1,POLG2,PPM1D,PPM1E,PRR11,PRR29,PSMC5,PTRH2,RAD51C,RGS9,RNF43,RNFT1,RPS6KB1,SCN4A,SEPT4,SKA2,SMARCD2,SMG8,SMURF2,SRSF1,STRADA,SUPT4H1,TACO1,TANC2,TBX2,TBX4,TEX14,TEX2,TLK2,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.AA.A01Z	17	56003224	57918369	272	0.0523	NEUTRAL	NA	30	"BZRAP1,C17orf47,CLTC,CUEDC1,DHX40,DYNLL2,EPX,GDPD1,HSF5,LPO,MKS1,MPO,MTMR4,OR4D1,OR4D2,PPM1E,PRR11,PTRH2,RAD51C,RNF43,SEPT4,SKA2,SMG8,SRSF1,SUPT4H1,TEX14,TRIM37,VEZF1,VMP1,YPEL2"
TCGA.AA.A01Q.01A	17	56082759	56357717	40	0.1463	NEUTRAL	NA	8	"DYNLL2,EPX,LPO,MKS1,MPO,OR4D1,OR4D2,SRSF1"
TCGA.AF.2689	17	56191007	56347048	47	0.3544	NEUTRAL	NA	5	"EPX,LPO,MKS1,OR4D1,OR4D2"
TCGA.5M.AATE	17	56221127	81048658	6379	0.2219	NEUTRAL	NA	308	Too-Many
TCGA.AA.3558	17	56221127	81048658	6385	-0.0156	NEUTRAL	NA	308	Too-Many
TCGA.AG.3728	17	56221127	81048658	6390	0.0014	NEUTRAL	NA	308	Too-Many
TCGA.AA.A00Q.01A	17	56232485	56499656	70	-0.0139	NEUTRAL	NA	10	"BZRAP1,EPX,HSF5,LPO,MKS1,MPO,OR4D1,OR4D2,RNF43,SUPT4H1"
TCGA.AA.A00N.01A	17	56280435	56285228	6	0.297	NEUTRAL	NA	2	"EPX,MKS1"
TCGA.AG.3909.01A	17	56284398	56292074	10	-0.2239	NEUTRAL	NA	1	MKS1
TCGA.AA.A00N.01A	17	56285833	56404897	58	-0.3266	NEUTRAL	NA	4	"BZRAP1,LPO,MKS1,MPO"
TCGA.AG.3906.01A	17	56321298	56329492	6	-0.1517	NEUTRAL	NA	1	LPO
TCGA.AG.4009.01A	17	56329492	56387833	23	-0.062	NEUTRAL	NA	3	"BZRAP1,LPO,MPO"
TCGA.AG.3906.01A	17	56332141	56384924	19	0.2524	NEUTRAL	NA	3	"BZRAP1,LPO,MPO"
TCGA.SS.A7HO	17	56339057	77883628	5747	0.0439	NEUTRAL	NA	228	Too-Many
TCGA.AA.A00A.01A	17	56397841	56404897	7	-0.2347	NEUTRAL	NA	1	BZRAP1
TCGA.AA.A00L.01A	17	56397841	56404897	8	0.0346	NEUTRAL	NA	1	BZRAP1
TCGA.AG.3906.01A	17	56404005	56428716	7	0.351	NEUTRAL	NA	2	"BZRAP1,SUPT4H1"
TCGA.AG.4009.01A	17	56408575	56557357	19	-0.1575	NEUTRAL	NA	3	"HSF5,RNF43,SUPT4H1"
TCGA.AA.A010.01A	17	56429363	56540123	12	0.2324	NEUTRAL	NA	3	"HSF5,RNF43,SUPT4H1"
TCGA.AG.3891.01A	17	56429363	56540123	12	-0.2441	NEUTRAL	NA	3	"HSF5,RNF43,SUPT4H1"
TCGA.AA.A00N.01A	17	56429363	56544194	13	0.1133	NEUTRAL	NA	3	"HSF5,RNF43,SUPT4H1"
TCGA.AG.3906.01A	17	56429363	56544194	13	0.0462	NEUTRAL	NA	3	"HSF5,RNF43,SUPT4H1"
TCGA.AA.A01Q.01A	17	56434787	56544194	11	0.3408	NEUTRAL	NA	2	"HSF5,RNF43"
TCGA.AG.3909.01A	17	56438123	56540123	8	0.0833	NEUTRAL	NA	2	"HSF5,RNF43"
TCGA.AA.3517	17	56504872	58398714	207	0.0046	NEUTRAL	NA	23	"C17orf47,CA4,CLTC,DHX40,GDPD1,HEATR6,HSF5,MTMR4,PPM1E,PRR11,PTRH2,RAD51C,RNFT1,RPS6KB1,SEPT4,SKA2,SMG8,TEX14,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.AG.3891.01A	17	56544194	61151243	489	0.1823	NEUTRAL	NA	40	"APPBP2,BCAS3,BRIP1,C17orf47,C17orf64,C17orf82,CA4,CLTC,DHX40,EFCAB3,GDPD1,HEATR6,HSF5,INTS2,MARCH10,MED13,METTL2A,MRC2,MTMR4,NACA2,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNFT1,RPS6KB1,SEPT4,SKA2,SMG8,TANC2,TBX2,TBX4,TEX14,TLK2,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.AA.A01Q.01A	17	56557357	56619128	30	-0.3459	NEUTRAL	NA	4	"C17orf47,HSF5,MTMR4,SEPT4"
TCGA.AG.A00C.01A	17	56606409	57183715	78	0.009	NEUTRAL	NA	6	"C17orf47,PPM1E,RAD51C,SEPT4,TEX14,TRIM37"
TCGA.AA.3509.01A	17	56619938	57665210	120	-0.4131	NEUTRAL	NA	11	"C17orf47,DHX40,GDPD1,PPM1E,PRR11,RAD51C,SKA2,SMG8,TEX14,TRIM37,YPEL2"
TCGA.AA.A01Q.01A	17	56619938	59155657	255	0.1772	NEUTRAL	NA	24	"APPBP2,BCAS3,C17orf47,C17orf64,CA4,CLTC,DHX40,GDPD1,HEATR6,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNFT1,RPS6KB1,SKA2,SMG8,TEX14,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.AG.3731	17	56629639	81048658	6305	0.0097	NEUTRAL	NA	295	Too-Many
TCGA.AG.3909.01A	17	56634293	56654687	12	0.3029	NEUTRAL	NA	1	TEX14
TCGA.CK.5914.01A	17	56634293	56658922	14	-0.071	NEUTRAL	NA	1	TEX14
TCGA.AA.A00N.01A	17	56638831	57161310	69	0.3168	NEUTRAL	NA	4	"PPM1E,RAD51C,TEX14,TRIM37"
TCGA.AF.3914.01A	17	56670864	79535993	2449	-0.2498	NEUTRAL	NA	244	Too-Many
TCGA.AA.3862.01A	17	56694840	57643002	82	0.0327	NEUTRAL	NA	10	"DHX40,GDPD1,PPM1E,PRR11,RAD51C,SKA2,SMG8,TEX14,TRIM37,YPEL2"
TCGA.CK.5914.01A	17	56707754	57094620	26	0.0199	NEUTRAL	NA	4	"PPM1E,RAD51C,TEX14,TRIM37"
TCGA.AM.5820	17	56737837	59388238	325	-0.2125	NEUTRAL	NA	23	"APPBP2,BCAS3,C17orf64,CA4,CLTC,DHX40,GDPD1,HEATR6,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNFT1,RPS6KB1,SKA2,SMG8,TEX14,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.AG.3909.01A	17	56772262	57157067	34	0.2165	NEUTRAL	NA	3	"PPM1E,RAD51C,TRIM37"
TCGA.AZ.4684.01A	17	56772262	57665210	84	-0.4685	NEUTRAL	NA	9	"DHX40,GDPD1,PPM1E,PRR11,RAD51C,SKA2,SMG8,TRIM37,YPEL2"
TCGA.F5.6464	17	57013802	81048658	6275	0.0311	NEUTRAL	NA	293	Too-Many
TCGA.AA.3861.01A	17	57092930	57643002	54	0.1038	NEUTRAL	NA	7	"DHX40,GDPD1,PRR11,SKA2,SMG8,TRIM37,YPEL2"
TCGA.CK.5914.01A	17	57148147	57430722	39	-0.1647	NEUTRAL	NA	6	"GDPD1,PRR11,SKA2,SMG8,TRIM37,YPEL2"
TCGA.AG.3909.01A	17	57158411	57297961	25	-0.3063	NEUTRAL	NA	5	"GDPD1,PRR11,SKA2,SMG8,TRIM37"
TCGA.AA.3532	17	57241937	58340943	147	-0.2813	NEUTRAL	NA	14	"CA4,CLTC,DHX40,GDPD1,HEATR6,PRR11,PTRH2,RNFT1,RPS6KB1,SMG8,TUBD1,USP32,VMP1,YPEL2"
TCGA.AG.3906.01A	17	57287435	57311794	7	0.2621	NEUTRAL	NA	2	"GDPD1,SMG8"
TCGA.AG.3909.01A	17	57311794	58023885	93	0.2024	NEUTRAL	NA	8	"CLTC,DHX40,GDPD1,PTRH2,RPS6KB1,TUBD1,VMP1,YPEL2"
TCGA.AA.A00N.01A	17	57322725	57684342	29	0.0029	NEUTRAL	NA	3	"DHX40,GDPD1,YPEL2"
TCGA.AG.A00C.01A	17	57322725	57918562	69	-0.0712	NEUTRAL	NA	6	"CLTC,DHX40,GDPD1,PTRH2,VMP1,YPEL2"
TCGA.AG.4009.01A	17	57430722	57474425	4	-0.1149	NEUTRAL	NA	1	YPEL2
TCGA.AG.4009.01A	17	57643002	59445640	193	0.2841	NEUTRAL	NA	14	"APPBP2,BCAS3,C17orf64,CA4,CLTC,DHX40,HEATR6,PPM1D,PTRH2,RNFT1,RPS6KB1,TUBD1,USP32,VMP1"
TCGA.AZ.4684.01A	17	57676071	57746108	20	-0.0172	NEUTRAL	NA	2	"CLTC,DHX40"
TCGA.AA.3509.01A	17	57676071	59861594	216	-0.0373	NEUTRAL	NA	19	"APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,CLTC,DHX40,HEATR6,NACA2,PPM1D,PTRH2,RNFT1,RPS6KB1,TBX2,TBX4,TUBD1,USP32,VMP1"
TCGA.AA.3861.01A	17	57679854	57991929	58	-0.2716	NEUTRAL	NA	6	"CLTC,DHX40,PTRH2,RPS6KB1,TUBD1,VMP1"
TCGA.AA.3862.01A	17	57679854	57991929	58	-0.3812	NEUTRAL	NA	6	"CLTC,DHX40,PTRH2,RPS6KB1,TUBD1,VMP1"
TCGA.AA.A010.01A	17	57733198	57758241	14	-0.295	NEUTRAL	NA	1	CLTC
TCGA.AZ.4684.01A	17	57761234	57918562	19	-0.1454	NEUTRAL	NA	3	"CLTC,PTRH2,VMP1"
TCGA.CK.5914.01A	17	57851087	57989995	18	-0.3535	NEUTRAL	NA	3	"RPS6KB1,TUBD1,VMP1"
TCGA.AA.A00N.01A	17	57937636	58023885	22	-0.2135	NEUTRAL	NA	2	"RPS6KB1,TUBD1"
TCGA.AG.A00C.01A	17	57937636	58235597	55	0.3752	NEUTRAL	NA	5	"CA4,HEATR6,RNFT1,RPS6KB1,TUBD1"
TCGA.AA.3994	17	57955753	81048658	6134	-0.0109	NEUTRAL	NA	282	Too-Many
TCGA.AG.A01Y	17	57969624	63660229	987	0.0157	NEUTRAL	NA	58	"ACE,APPBP2,AXIN2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FTSJ3,GH1,GH2,GNA13,HEATR6,ICAM2,INTS2,KCNH6,LIMD2,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,PECAM1,POLG2,PPM1D,PRR29,PSMC5,RGS9,RNFT1,RPS6KB1,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TBX2,TBX4,TEX2,TLK2,TUBD1,USP32"
TCGA.AG.3909.01A	17	58024904	58148029	24	-0.4148	NEUTRAL	NA	3	"HEATR6,RNFT1,RPS6KB1"
TCGA.AA.3861.01A	17	58120884	58275572	33	0.1302	NEUTRAL	NA	3	"CA4,HEATR6,USP32"
TCGA.AZ.4684.01A	17	58120884	58329685	51	0.1489	NEUTRAL	NA	3	"CA4,HEATR6,USP32"
TCGA.AA.3862.01A	17	58123344	58275572	32	-0.1428	NEUTRAL	NA	3	"CA4,HEATR6,USP32"
TCGA.CK.5914.01A	17	58126889	58144797	9	-0.0953	NEUTRAL	NA	1	HEATR6
TCGA.AA.A010.01A	17	58143553	58378918	48	0.1603	NEUTRAL	NA	3	"CA4,HEATR6,USP32"
TCGA.AA.A00Q.01A	17	58144797	58234741	11	-0.0342	NEUTRAL	NA	2	"CA4,HEATR6"
TCGA.CK.5914.01A	17	58156006	58235597	7	0.0415	NEUTRAL	NA	2	"CA4,HEATR6"
TCGA.AA.A01F.01A	17	58233904	60749331	124	-0.2639	NEUTRAL	NA	17	"APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,EFCAB3,INTS2,MED13,METTL2A,MRC2,NACA2,PPM1D,TBX2,TBX4,TLK2,USP32"
TCGA.AG.3909.01A	17	58235379	58571780	51	0.2992	NEUTRAL	NA	4	"APPBP2,C17orf64,CA4,USP32"
TCGA.AA.A00Q.01A	17	58235379	79182676	1778	0.2842	NEUTRAL	NA	217	Too-Many
TCGA.AG.A00C.01A	17	58236544	61770862	316	0.0343	NEUTRAL	NA	25	"ACE,APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,CYB561,DCAF7,EFCAB3,INTS2,KCNH6,MAP3K3,MARCH10,MED13,METTL2A,MRC2,NACA2,PPM1D,TACO1,TANC2,TBX2,TBX4,TLK2,USP32"
TCGA.AA.A00N.01A	17	58258634	59445640	79	0.3239	NEUTRAL	NA	5	"APPBP2,BCAS3,C17orf64,PPM1D,USP32"
TCGA.AA.A01K.01A	17	58262784	72769663	1070	0.1122	NEUTRAL	NA	106	Too-Many
TCGA.AA.3862.01A	17	58299722	60598118	167	-0.0328	NEUTRAL	NA	15	"APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,EFCAB3,INTS2,MED13,METTL2A,NACA2,PPM1D,TBX2,TBX4,TLK2,USP32"
TCGA.AA.3861.01A	17	58299722	71199087	1003	0.0566	NEUTRAL	NA	83	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ACE,AMZ2,APOH,APPBP2,ARSG,AXIN2,BCAS3,BPTF,BRIP1,C17orf58,C17orf64,C17orf82,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,COG1,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,INTS2,KCNH6,KCNJ16,KCNJ2,KPNA2,LIMD2,LRRC37A3,MAP2K6,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,NOL11,PECAM1,PITPNC1,POLG2,PPM1D,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SLC39A11,SMARCD2,SMURF2,SOX9,SSTR2,STRADA,TACO1,TANC2,TBX2,TBX4,TEX2,TLK2,USP32,WIPI1"
TCGA.AZ.4684.01A	17	58332479	58945920	41	-0.3709	NEUTRAL	NA	5	"APPBP2,BCAS3,C17orf64,PPM1D,USP32"
TCGA.AA.3532	17	58343818	81048658	6110	-0.0058	NEUTRAL	NA	277	Too-Many
TCGA.AA.A010.01A	17	58508483	59445640	42	0.3388	NEUTRAL	NA	4	"APPBP2,BCAS3,C17orf64,PPM1D"
TCGA.AG.3902	17	58521153	65307829	1483	0.0246	NEUTRAL	NA	57	"ACE,APOH,APPBP2,AXIN2,BCAS3,BRIP1,C17orf82,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,INTS2,KCNH6,LIMD2,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,PECAM1,POLG2,PPM1D,PRKCA,PRR29,PSMC5,RGS9,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TBX2,TBX4,TEX2,TLK2"
TCGA.AG.3909.01A	17	58577743	58711162	5	-0.4845	NEUTRAL	NA	2	"APPBP2,PPM1D"
TCGA.AA.3517	17	58658472	60894078	350	0.0731	NEUTRAL	NA	14	"BCAS3,BRIP1,C17orf82,EFCAB3,INTS2,MARCH10,MED13,METTL2A,MRC2,NACA2,PPM1D,TBX2,TBX4,TLK2"
TCGA.CK.5914.01A	17	58677738	59445640	29	-0.1304	NEUTRAL	NA	2	"BCAS3,PPM1D"
TCGA.AG.3909.01A	17	58725206	59485473	31	0.2912	NEUTRAL	NA	3	"BCAS3,PPM1D,TBX2"
TCGA.AY.A8YK	17	58917030	64583322	1180	-0.041	NEUTRAL	NA	51	"ACE,APOH,AXIN2,BCAS3,BRIP1,C17orf82,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FTSJ3,GH1,GH2,GNA13,ICAM2,INTS2,KCNH6,LIMD2,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,PECAM1,POLG2,PRKCA,PRR29,PSMC5,RGS9,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TBX2,TBX4,TEX2,TLK2"
TCGA.AZ.4684.01A	17	58951995	59861594	44	0.0934	NEUTRAL	NA	6	"BCAS3,BRIP1,C17orf82,NACA2,TBX2,TBX4"
TCGA.AA.A00L.01A	17	59067295	59485473	8	0.2212	NEUTRAL	NA	2	"BCAS3,TBX2"
TCGA.DC.6682	17	59114553	59820169	173	0.0765	NEUTRAL	NA	6	"BCAS3,BRIP1,C17orf82,NACA2,TBX2,TBX4"
TCGA.DM.A28H	17	59200637	70393079	3151	-0.113	NEUTRAL	NA	76	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ACE,AMZ2,APOH,ARSG,AXIN2,BCAS3,BPTF,BRIP1,C17orf58,C17orf82,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,INTS2,KCNH6,KCNJ16,KCNJ2,KPNA2,LIMD2,LRRC37A3,MAP2K6,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SMARCD2,SMURF2,SOX9,STRADA,TACO1,TANC2,TBX2,TBX4,TEX2,TLK2,WIPI1"
TCGA.AM.5820	17	59389283	59471150	34	0.2241	NEUTRAL	NA	1	BCAS3
TCGA.AA.A01Q.01A	17	59479057	59557198	11	-0.3526	NEUTRAL	NA	3	"C17orf82,TBX2,TBX4"
TCGA.A6.2678	17	59481372	81048658	5933	0.3649	NEUTRAL	NA	272	Too-Many
TCGA.AM.5820	17	59493007	59571052	29	0.3286	NEUTRAL	NA	1	TBX4
TCGA.A6.6653	17	59523224	75309350	4536	0.0003	NEUTRAL	NA	169	Too-Many
TCGA.AA.A010.01A	17	59533811	59557198	6	-0.3741	NEUTRAL	NA	1	TBX4
TCGA.AA.A004.01A	17	59534846	67178779	781	0.1848	NEUTRAL	NA	68	"ABCA10,ABCA6,ABCA8,ABCA9,ACE,AMZ2,APOH,ARSG,AXIN2,BPTF,BRIP1,C17orf58,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,INTS2,KCNH6,KPNA2,LIMD2,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TBX4,TEX2,TLK2,WIPI1"
TCGA.AA.3695	17	59538662	69482952	2683	-0.3662	NEUTRAL	NA	72	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ACE,AMZ2,APOH,ARSG,AXIN2,BPTF,BRIP1,C17orf58,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,INTS2,KCNH6,KCNJ16,KCNJ2,KPNA2,LIMD2,LRRC37A3,MAP2K6,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TBX4,TEX2,TLK2,WIPI1"
TCGA.AG.4009.01A	17	59544839	60072461	67	0.3339	NEUTRAL	NA	5	"BRIP1,INTS2,MED13,NACA2,TBX4"
TCGA.CK.5914.01A	17	59557424	59981790	37	-0.0118	NEUTRAL	NA	4	"BRIP1,INTS2,NACA2,TBX4"
TCGA.AG.3909.01A	17	59557424	60072461	64	0.3265	NEUTRAL	NA	5	"BRIP1,INTS2,MED13,NACA2,TBX4"
TCGA.AA.A01Q.01A	17	59557424	60743798	59	0.1703	NEUTRAL	NA	9	"BRIP1,EFCAB3,INTS2,MED13,METTL2A,MRC2,NACA2,TBX4,TLK2"
TCGA.AM.5820	17	59574597	60405482	109	-0.2436	NEUTRAL	NA	4	"BRIP1,INTS2,MED13,NACA2"
TCGA.AA.3982	17	59604169	59724500	25	0.2656	NEUTRAL	NA	1	NACA2
TCGA.AA.3982	17	59728238	59935722	26	-0.1018	NEUTRAL	NA	1	BRIP1
TCGA.A6.3808.01A	17	59934382	62589529	428	-0.4108	NEUTRAL	NA	39	"ACE,BRIP1,CCDC47,CD79B,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FTSJ3,GH1,GH2,ICAM2,INTS2,KCNH6,LIMD2,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,PECAM1,POLG2,PRR29,PSMC5,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TEX2,TLK2"
TCGA.AA.A00N.01A	17	59949574	60072461	38	0.33	NEUTRAL	NA	2	"INTS2,MED13"
TCGA.AA.3509.01A	17	59949574	66596396	697	-0.1615	NEUTRAL	NA	61	"ACE,AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,INTS2,KCNH6,KPNA2,LIMD2,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TEX2,TLK2,WIPI1"
TCGA.AZ.4684.01A	17	59949574	66596396	697	-0.1837	NEUTRAL	NA	61	"ACE,AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,INTS2,KCNH6,KPNA2,LIMD2,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TEX2,TLK2,WIPI1"
TCGA.CK.5914.01A	17	59984721	60469144	42	-0.398	NEUTRAL	NA	3	"EFCAB3,INTS2,MED13"
TCGA.AA.A00L.01A	17	60042350	60087859	3	0.3395	NEUTRAL	NA	1	MED13
TCGA.AA.A010.01A	17	60064321	60108758	7	-0.1787	NEUTRAL	NA	1	MED13
TCGA.AA.3679	17	60155816	81048658	5821	0.375	NEUTRAL	NA	265	Too-Many
TCGA.D5.5540	17	60356028	81048658	5800	0.0188	NEUTRAL	NA	265	Too-Many
TCGA.AA.A010.01A	17	60447565	60679351	39	0.2592	NEUTRAL	NA	3	"EFCAB3,METTL2A,TLK2"
TCGA.AG.4009.01A	17	60460273	61488843	91	0.2485	NEUTRAL	NA	6	"EFCAB3,MARCH10,METTL2A,MRC2,TANC2,TLK2"
TCGA.CK.5914.01A	17	60470873	60689706	36	0.2443	NEUTRAL	NA	3	"EFCAB3,METTL2A,TLK2"
TCGA.AG.3909.01A	17	60558428	60600416	4	-0.403	NEUTRAL	NA	1	TLK2
TCGA.EI.6509	17	60587679	81048658	5773	-0.0219	NEUTRAL	NA	263	Too-Many
TCGA.AG.3909.01A	17	60601578	60689706	17	0.3466	NEUTRAL	NA	1	TLK2
TCGA.AA.3862.01A	17	60655791	63545616	384	-0.0998	NEUTRAL	NA	38	"ACE,AXIN2,CCDC47,CD79B,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,ERN1,FTSJ3,GH1,GH2,GNA13,ICAM2,KCNH6,LIMD2,LRRC37A3,MAP3K3,MARCH10,MILR1,MRC2,PECAM1,POLG2,PRR29,PSMC5,RGS9,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TEX2,TLK2"
TCGA.AM.5820	17	60664360	61550237	122	-0.0216	NEUTRAL	NA	5	"CYB561,MARCH10,MRC2,TANC2,TLK2"
TCGA.AA.A00N.01A	17	60673900	61021524	41	-0.4049	NEUTRAL	NA	3	"MARCH10,MRC2,TLK2"
TCGA.AA.A010.01A	17	60683453	60748961	9	-0.4819	NEUTRAL	NA	2	"MRC2,TLK2"
TCGA.AA.A00A.01A	17	60689706	61622931	77	0.1915	NEUTRAL	NA	7	"ACE,CYB561,KCNH6,MARCH10,MRC2,TANC2,TLK2"
TCGA.AG.3909.01A	17	60741879	60788545	24	-0.3789	NEUTRAL	NA	2	"MARCH10,MRC2"
TCGA.CK.5914.01A	17	60741879	60788545	26	-0.5055	NEUTRAL	NA	2	"MARCH10,MRC2"
TCGA.AA.A01Q.01A	17	60744080	60788545	23	-0.4973	NEUTRAL	NA	2	"MARCH10,MRC2"
TCGA.G5.6235	17	60746273	60791781	11	-0.4046	NEUTRAL	NA	2	"MARCH10,MRC2"
TCGA.AA.A01F.01A	17	60751387	60782820	16	0.0356	NEUTRAL	NA	2	"MARCH10,MRC2"
TCGA.AA.A01F.01A	17	60788545	61905433	126	-0.2297	NEUTRAL	NA	14	"ACE,CCDC47,CYB561,DCAF7,DDX42,FTSJ3,KCNH6,LIMD2,MAP3K3,MARCH10,PSMC5,STRADA,TACO1,TANC2"
TCGA.AG.A026	17	60791781	60889862	23	-0.4953	NEUTRAL	NA	1	10-Mar
TCGA.G5.6235	17	60791817	81048658	5744	0.1565	NEUTRAL	NA	261	Too-Many
TCGA.QG.A5Z2	17	60791817	81048658	5683	-0.0658	NEUTRAL	NA	261	Too-Many
TCGA.CK.5914.01A	17	60799802	61457047	22	0.1018	NEUTRAL	NA	2	"MARCH10,TANC2"
TCGA.AG.3909.01A	17	60799802	61497359	34	0.3477	NEUTRAL	NA	2	"MARCH10,TANC2"
TCGA.AA.A01Q.01A	17	60799802	61554418	20	-0.0041	NEUTRAL	NA	3	"CYB561,MARCH10,TANC2"
TCGA.AA.A010.01A	17	60813255	61554418	38	-0.0753	NEUTRAL	NA	3	"CYB561,MARCH10,TANC2"
TCGA.AG.A026	17	60890143	79923717	5515	-0.0144	NEUTRAL	NA	231	Too-Many
TCGA.AA.3982	17	61002383	61484504	49	-0.0021	NEUTRAL	NA	1	TANC2
TCGA.AG.3891.01A	17	61176485	61417445	8	-0.4026	NEUTRAL	NA	1	TANC2
TCGA.AG.3891.01A	17	61428559	61558880	25	0.1553	NEUTRAL	NA	3	"ACE,CYB561,TANC2"
TCGA.AG.4009.01A	17	61489311	61566255	25	-0.3068	NEUTRAL	NA	3	"ACE,CYB561,TANC2"
TCGA.AA.A00N.01A	17	61492838	61678406	52	-0.4383	NEUTRAL	NA	6	"ACE,CYB561,DCAF7,KCNH6,TACO1,TANC2"
TCGA.CK.5914.01A	17	61497359	61622931	42	-0.4798	NEUTRAL	NA	4	"ACE,CYB561,KCNH6,TANC2"
TCGA.AG.3909.01A	17	61512398	61561162	13	-0.3682	NEUTRAL	NA	2	"ACE,CYB561"
TCGA.AG.3891.01A	17	61565971	62041030	150	0.2192	NEUTRAL	NA	19	"ACE,CCDC47,CD79B,CSH1,CSH2,CSHL1,DCAF7,DDX42,FTSJ3,GH1,GH2,KCNH6,LIMD2,MAP3K3,PSMC5,SCN4A,SMARCD2,STRADA,TACO1"
TCGA.AG.4009.01A	17	61568278	61620879	14	0.0324	NEUTRAL	NA	2	"ACE,KCNH6"
TCGA.AA.A010.01A	17	61573744	61678406	21	-0.014	NEUTRAL	NA	4	"ACE,DCAF7,KCNH6,TACO1"
TCGA.AA.A01Q.01A	17	61573744	62006539	113	0.0495	NEUTRAL	NA	18	"ACE,CCDC47,CD79B,CSH1,CSH2,CSHL1,DCAF7,DDX42,FTSJ3,GH1,GH2,KCNH6,LIMD2,MAP3K3,PSMC5,SMARCD2,STRADA,TACO1"
TCGA.AG.3909.01A	17	61622428	61678406	10	0.2909	NEUTRAL	NA	3	"DCAF7,KCNH6,TACO1"
TCGA.AA.A01Z	17	61622702	62755822	212	0.0311	NEUTRAL	NA	28	"CCDC47,CD79B,CEP95,CSH1,CSH2,CSHL1,DCAF7,DDX42,DDX5,ERN1,FTSJ3,GH1,GH2,ICAM2,KCNH6,LIMD2,MAP3K3,MILR1,PECAM1,POLG2,PRR29,PSMC5,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TEX2"
TCGA.AM.5820	17	61629691	71245294	3128	-0.0462	NEUTRAL	NA	65	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,C17orf80,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,COG1,CPSF4L,CSH1,CSH2,CSHL1,DCAF7,DDX42,DDX5,ERN1,FAM104A,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,KCNJ16,KCNJ2,KPNA2,LIMD2,LRRC37A3,MAP2K6,MAP3K3,MILR1,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SLC39A11,SMARCD2,SMURF2,SOX9,SSTR2,STRADA,TACO1,TEX2,WIPI1"
TCGA.CI.6622	17	61629691	81048658	5613	-0.0256	NEUTRAL	NA	256	Too-Many
TCGA.AG.4009.01A	17	61678406	61762812	13	0.1763	NEUTRAL	NA	2	"MAP3K3,TACO1"
TCGA.CK.5914.01A	17	61681872	61869721	45	-0.4089	NEUTRAL	NA	6	"CCDC47,DDX42,LIMD2,MAP3K3,STRADA,TACO1"
TCGA.AA.A00N.01A	17	61723318	61784580	20	-0.2932	NEUTRAL	NA	3	"LIMD2,MAP3K3,STRADA"
TCGA.AA.3517	17	61728880	63945900	518	0.0347	NEUTRAL	NA	30	"AXIN2,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,DDX42,DDX5,ERN1,FTSJ3,GH1,GH2,GNA13,ICAM2,LIMD2,LRRC37A3,MAP3K3,MILR1,PECAM1,POLG2,PRR29,PSMC5,RGS9,SCN4A,SMARCD2,SMURF2,STRADA,TEX2"
TCGA.AA.A00D.01A	17	61744248	61775862	12	0.3349	NEUTRAL	NA	2	"LIMD2,MAP3K3"
TCGA.AA.A00A.01A	17	61744248	61781664	15	0.3447	NEUTRAL	NA	3	"LIMD2,MAP3K3,STRADA"
TCGA.AG.4009.01A	17	61765869	61791329	17	-0.442	NEUTRAL	NA	3	"LIMD2,MAP3K3,STRADA"
TCGA.AG.3909.01A	17	61770862	61805612	13	-0.0786	NEUTRAL	NA	3	"LIMD2,MAP3K3,STRADA"
TCGA.AA.A010.01A	17	61824182	61877816	16	-0.0076	NEUTRAL	NA	2	"CCDC47,DDX42"
TCGA.AG.A00C.01A	17	61864363	61901145	22	-0.0643	NEUTRAL	NA	2	"DDX42,FTSJ3"
TCGA.AG.3909.01A	17	61869721	61905433	27	0.0767	NEUTRAL	NA	3	"DDX42,FTSJ3,PSMC5"
TCGA.AA.A00N.01A	17	61869721	61915590	42	-0.4317	NEUTRAL	NA	4	"DDX42,FTSJ3,PSMC5,SMARCD2"
TCGA.CK.5914.01A	17	61875332	61898685	18	0.0602	NEUTRAL	NA	2	"DDX42,FTSJ3"
TCGA.AG.4009.01A	17	61882389	61908117	26	0.0662	NEUTRAL	NA	3	"DDX42,FTSJ3,PSMC5"
TCGA.AA.A00A.01A	17	61897190	62049440	40	0.1479	NEUTRAL	NA	10	"CD79B,CSH1,CSH2,CSHL1,FTSJ3,GH1,GH2,PSMC5,SCN4A,SMARCD2"
TCGA.AG.A00C.01A	17	61901960	61914763	19	0.2834	NEUTRAL	NA	3	"FTSJ3,PSMC5,SMARCD2"
TCGA.AG.3909.01A	17	61907191	61959060	20	-0.2752	NEUTRAL	NA	4	"CSH2,GH2,PSMC5,SMARCD2"
TCGA.AA.A01F.01A	17	61908117	81050855	1652	-0.2212	NEUTRAL	NA	248	Too-Many
TCGA.AF.2689	17	61910166	62662506	161	0.3311	NEUTRAL	NA	18	"CD79B,CEP95,CSH1,CSH2,CSHL1,DDX5,ERN1,GH1,GH2,ICAM2,MILR1,PECAM1,POLG2,PRR29,SCN4A,SMARCD2,SMURF2,TEX2"
TCGA.AG.A00C.01A	17	61949447	62473891	85	-0.1557	NEUTRAL	NA	13	"CD79B,CSH1,CSH2,CSHL1,ERN1,GH1,GH2,ICAM2,MILR1,PECAM1,PRR29,SCN4A,TEX2"
TCGA.AG.A016.01A	17	61972354	62009487	16	-0.3778	NEUTRAL	NA	4	"CD79B,CSH1,CSHL1,GH1"
TCGA.A6.6648	17	61988922	69018992	2118	0.232	NEUTRAL	NA	44	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CD79B,CEP112,CEP95,DDX5,ERN1,FAM20A,GH1,GNA13,HELZ,ICAM2,KCNJ16,KCNJ2,KPNA2,LRRC37A3,MAP2K6,MILR1,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMD12,RGS9,SCN4A,SLC16A6,SMURF2,TEX2,WIPI1"
TCGA.AA.A00L.01A	17	62018100	62049440	10	0.2186	NEUTRAL	NA	1	SCN4A
TCGA.AG.3909.01A	17	62018100	62082430	24	-0.4621	NEUTRAL	NA	3	"ICAM2,PRR29,SCN4A"
TCGA.AA.A00N.01A	17	62018100	62083925	26	-0.2739	NEUTRAL	NA	3	"ICAM2,PRR29,SCN4A"
TCGA.AA.A01Q.01A	17	62022295	63221109	72	0.1104	NEUTRAL	NA	14	"CEP95,DDX5,ERN1,GNA13,ICAM2,LRRC37A3,MILR1,PECAM1,POLG2,PRR29,RGS9,SCN4A,SMURF2,TEX2"
TCGA.AA.A00O.01A	17	62025213	71427594	610	0.0361	NEUTRAL	NA	51	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,C17orf80,CACNG1,CACNG4,CACNG5,CDC42EP4,CEP112,CEP95,COG1,CPSF4L,DDX5,ERN1,FAM104A,FAM20A,GNA13,HELZ,ICAM2,KCNJ16,KCNJ2,KPNA2,LRRC37A3,MAP2K6,MILR1,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMD12,RGS9,SCN4A,SDK2,SLC16A6,SLC39A11,SMURF2,SOX9,SSTR2,TEX2,WIPI1"
TCGA.AG.3891.01A	17	62041781	62145498	26	-0.1694	NEUTRAL	NA	4	"ERN1,ICAM2,PRR29,SCN4A"
TCGA.CK.5914.01A	17	62080065	62478990	45	0.0891	NEUTRAL	NA	7	"ERN1,ICAM2,MILR1,PECAM1,POLG2,PRR29,TEX2"
TCGA.AA.3968	17	62084452	62165956	30	-0.1166	NEUTRAL	NA	2	"ERN1,ICAM2"
TCGA.AG.A016.01A	17	62141318	62525357	49	0.0718	NEUTRAL	NA	7	"CEP95,DDX5,ERN1,MILR1,PECAM1,POLG2,TEX2"
TCGA.AG.3891.01A	17	62149289	63739139	124	0.1823	NEUTRAL	NA	13	"AXIN2,CEP112,CEP95,DDX5,ERN1,GNA13,LRRC37A3,MILR1,PECAM1,POLG2,RGS9,SMURF2,TEX2"
TCGA.AA.3968	17	62410570	62641159	25	0.0324	NEUTRAL	NA	5	"CEP95,DDX5,MILR1,POLG2,SMURF2"
TCGA.AG.3909.01A	17	62476359	62481793	3	-0.4261	NEUTRAL	NA	1	POLG2
TCGA.AA.A010.01A	17	62504663	62533680	18	-0.2305	NEUTRAL	NA	1	CEP95
TCGA.AG.3909.01A	17	62506243	62522150	7	-0.2381	NEUTRAL	NA	1	CEP95
TCGA.AG.A00C.01A	17	62512804	62594453	32	-0.0434	NEUTRAL	NA	2	"CEP95,SMURF2"
TCGA.CK.5914.01A	17	62515419	65971839	239	0.0527	NEUTRAL	NA	17	"APOH,AXIN2,BPTF,CACNG1,CACNG4,CACNG5,CEP112,CEP95,GNA13,HELZ,LRRC37A3,NOL11,PITPNC1,PRKCA,PSMD12,RGS9,SMURF2"
TCGA.AA.A00N.01A	17	62517479	62527014	7	-0.1581	NEUTRAL	NA	1	CEP95
TCGA.AG.3909.01A	17	62523180	62850638	28	0.3331	NEUTRAL	NA	3	"CEP95,LRRC37A3,SMURF2"
TCGA.AA.A010.01A	17	62567867	63159098	33	0.1508	NEUTRAL	NA	4	"GNA13,LRRC37A3,RGS9,SMURF2"
TCGA.D5.5538	17	62659888	81048658	5420	0.3554	NEUTRAL	NA	229	Too-Many
TCGA.CA.5254	17	62694737	62985836	16	0.1274	NEUTRAL	NA	1	LRRC37A3
TCGA.AA.A02O	17	62703681	63422969	187	0.0512	NEUTRAL	NA	3	"GNA13,LRRC37A3,RGS9"
TCGA.AG.A016.01A	17	62850638	62893320	15	-0.1351	NEUTRAL	NA	1	LRRC37A3
TCGA.AG.4009.01A	17	62854873	63133635	17	-0.1662	NEUTRAL	NA	3	"GNA13,LRRC37A3,RGS9"
TCGA.A6.3808.01A	17	62893320	65850046	168	0.3337	NEUTRAL	NA	15	"APOH,AXIN2,BPTF,CACNG1,CACNG4,CACNG5,CEP112,GNA13,HELZ,LRRC37A3,NOL11,PITPNC1,PRKCA,PSMD12,RGS9"
TCGA.AG.A00C.01A	17	62893320	65978285	194	-0.036	NEUTRAL	NA	15	"APOH,AXIN2,BPTF,CACNG1,CACNG4,CACNG5,CEP112,GNA13,HELZ,LRRC37A3,NOL11,PITPNC1,PRKCA,PSMD12,RGS9"
TCGA.AA.3968	17	62953910	63179117	54	0.0376	NEUTRAL	NA	2	"GNA13,RGS9"
TCGA.AA.A00N.01A	17	63010348	63159098	11	-0.2627	NEUTRAL	NA	2	"GNA13,RGS9"
TCGA.AG.A016.01A	17	63010348	67285974	423	0.3431	NEUTRAL	NA	27	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CEP112,FAM20A,GNA13,HELZ,KPNA2,NOL11,PITPNC1,PRKAR1A,PRKCA,PSMD12,RGS9,SLC16A6,WIPI1"
TCGA.AA.3950	17	63015003	63539592	200	0.3512	NEUTRAL	NA	3	"AXIN2,GNA13,RGS9"
TCGA.CA.5254	17	63019228	63057650	9	-0.0991	NEUTRAL	NA	1	GNA13
TCGA.AF.A56L	17	63128260	66352355	996	-0.1755	NEUTRAL	NA	18	"AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CEP112,HELZ,KPNA2,NOL11,PITPNC1,PRKCA,PSMD12,RGS9,SLC16A6"
TCGA.AG.4009.01A	17	63149497	65944159	183	0.3591	NEUTRAL	NA	13	"APOH,AXIN2,BPTF,CACNG1,CACNG4,CACNG5,CEP112,HELZ,NOL11,PITPNC1,PRKCA,PSMD12,RGS9"
TCGA.AA.3982	17	63328557	63335400	5	-0.5008	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	17	63526043	63534271	8	-0.4635	NEUTRAL	NA	1	AXIN2
TCGA.AA.3950	17	63541496	81048658	5196	0.048	NEUTRAL	NA	226	Too-Many
TCGA.AG.3909.01A	17	63545616	65989023	164	0.2825	NEUTRAL	NA	13	"APOH,AXIN2,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CEP112,HELZ,NOL11,PITPNC1,PRKCA,PSMD12"
TCGA.EF.5830	17	63561591	81048658	5191	-0.0348	NEUTRAL	NA	225	Too-Many
TCGA.AA.A01Q.01A	17	63631993	64641474	40	0.137	NEUTRAL	NA	3	"APOH,CEP112,PRKCA"
TCGA.AA.A010.01A	17	63631993	65960290	158	0.3072	NEUTRAL	NA	11	"APOH,BPTF,CACNG1,CACNG4,CACNG5,CEP112,HELZ,NOL11,PITPNC1,PRKCA,PSMD12"
TCGA.AA.3867	17	63652231	81048658	5165	0.2735	NEUTRAL	NA	225	Too-Many
TCGA.AA.3982	17	63700789	63987496	73	0.0229	NEUTRAL	NA	1	CEP112
TCGA.AA.3850	17	63733728	63962814	53	-0.23765	NEUTRAL	NA	1	CEP112
TCGA.AG.A01Y	17	63733728	81048658	5124	0.0285	NEUTRAL	NA	225	Too-Many
TCGA.AG.3891.01A	17	63746730	64179265	22	-0.1209	NEUTRAL	NA	1	CEP112
TCGA.AA.3850	17	63971218	66551009	785	0.36665	NEUTRAL	NA	19	"AMZ2,APOH,ARSG,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CEP112,FAM20A,HELZ,KPNA2,NOL11,PITPNC1,PRKAR1A,PRKCA,PSMD12,SLC16A6,WIPI1"
TCGA.AG.A01W.01A	17	64037967	64390309	21	0.2405	NEUTRAL	NA	3	"APOH,CEP112,PRKCA"
TCGA.AA.3862.01A	17	64065979	65850046	113	-0.3429	NEUTRAL	NA	11	"APOH,BPTF,CACNG1,CACNG4,CACNG5,CEP112,HELZ,NOL11,PITPNC1,PRKCA,PSMD12"
TCGA.AG.3891.01A	17	64208192	65026575	33	0.253	NEUTRAL	NA	4	"APOH,CACNG4,CACNG5,PRKCA"
TCGA.AA.3848	17	64369908	64387327	9	-0.2691	NEUTRAL	NA	1	PRKCA
TCGA.AG.A01W.01A	17	64391474	64410999	10	-0.1877	NEUTRAL	NA	1	PRKCA
TCGA.AA.3848	17	64393841	64541947	77	-0.0033	NEUTRAL	NA	1	PRKCA
TCGA.AD.6901	17	64420324	81048658	4934	-0.3348	NEUTRAL	NA	223	Too-Many
TCGA.AG.A01W.01A	17	64444641	64515772	17	-0.0332	NEUTRAL	NA	1	PRKCA
TCGA.AA.3517	17	64453227	65454704	366	-0.0126	NEUTRAL	NA	7	"CACNG1,CACNG4,CACNG5,HELZ,PITPNC1,PRKCA,PSMD12"
TCGA.AA.3848	17	64546243	81048658	4887	0.0669	NEUTRAL	NA	223	Too-Many
TCGA.AG.A01W.01A	17	64558717	64630934	29	0.2036	NEUTRAL	NA	1	PRKCA
TCGA.AY.A8YK	17	64634715	65576147	320	-0.0694	NEUTRAL	NA	7	"CACNG1,CACNG4,CACNG5,HELZ,PITPNC1,PRKCA,PSMD12"
TCGA.AG.A01W.01A	17	64645012	64808848	66	0.1563	NEUTRAL	NA	1	PRKCA
TCGA.AA.A01Q.01A	17	64683202	65050053	23	-0.2522	NEUTRAL	NA	4	"CACNG1,CACNG4,CACNG5,PRKCA"
TCGA.AG.3732	17	64684564	81048658	4807	0.3715	NEUTRAL	NA	223	Too-Many
TCGA.AG.A01W.01A	17	64820837	70052306	209	-0.1176	NEUTRAL	NA	24	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARSG,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,FAM20A,HELZ,KCNJ16,KCNJ2,KPNA2,MAP2K6,NOL11,PITPNC1,PRKAR1A,PSMD12,SLC16A6,WIPI1"
TCGA.DC.6682	17	64870848	65319198	138	0.1353	NEUTRAL	NA	4	"CACNG1,CACNG4,CACNG5,HELZ"
TCGA.AA.A00D.01A	17	64873422	65052169	13	-0.0374	NEUTRAL	NA	3	"CACNG1,CACNG4,CACNG5"
TCGA.AA.A00A.01A	17	64880605	65134018	14	0.0144	NEUTRAL	NA	4	"CACNG1,CACNG4,CACNG5,HELZ"
TCGA.DM.A1HB	17	64939791	77365533	3854	0.0483	NEUTRAL	NA	141	Too-Many
TCGA.A6.2672	17	64945242	70483052	1854	0.0914	NEUTRAL	NA	24	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARSG,BPTF,C17orf58,CACNG1,CACNG4,FAM20A,HELZ,KCNJ16,KCNJ2,KPNA2,MAP2K6,NOL11,PITPNC1,PRKAR1A,PSMD12,SLC16A6,SOX9,WIPI1"
TCGA.AG.3891.01A	17	65027070	65190059	30	-0.1803	NEUTRAL	NA	3	"CACNG1,CACNG4,HELZ"
TCGA.AA.A01Q.01A	17	65051167	65978285	63	0.1973	NEUTRAL	NA	6	"BPTF,CACNG1,HELZ,NOL11,PITPNC1,PSMD12"
TCGA.AG.3891.01A	17	65191464	66440582	111	0.2924	NEUTRAL	NA	12	"AMZ2,ARSG,BPTF,C17orf58,HELZ,KPNA2,NOL11,PITPNC1,PRKAR1A,PSMD12,SLC16A6,WIPI1"
TCGA.CM.6170	17	65230990	65862378	151	-0.1965	NEUTRAL	NA	5	"BPTF,HELZ,NOL11,PITPNC1,PSMD12"
TCGA.A6.2684	17	65276900	69075899	1079	0.0024	NEUTRAL	NA	20	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARSG,BPTF,C17orf58,FAM20A,KCNJ16,KCNJ2,KPNA2,MAP2K6,NOL11,PITPNC1,PRKAR1A,PSMD12,SLC16A6,WIPI1"
TCGA.AG.3902	17	65308697	81048658	4586	-0.4247	NEUTRAL	NA	218	Too-Many
TCGA.AF.2689	17	65548539	65738331	56	-0.0493	NEUTRAL	NA	2	"NOL11,PITPNC1"
TCGA.AG.3611.01A	17	65733955	65821810	7	0.1494	NEUTRAL	NA	2	"BPTF,NOL11"
TCGA.AG.3611.01A	17	65850046	67537815	278	-0.5134	NEUTRAL	NA	15	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARSG,BPTF,C17orf58,FAM20A,KPNA2,MAP2K6,PRKAR1A,SLC16A6,WIPI1"
TCGA.CM.6170	17	65872402	65975691	15	0.2241	NEUTRAL	NA	1	BPTF
TCGA.AG.4009.01A	17	65955646	66274202	25	-0.1643	NEUTRAL	NA	6	"AMZ2,ARSG,BPTF,C17orf58,KPNA2,SLC16A6"
TCGA.AA.3854	17	65962237	81048658	4453	-0.0098	NEUTRAL	NA	215	Too-Many
TCGA.AA.A02O	17	65975691	81048658	4448	0.0108	NEUTRAL	NA	215	Too-Many
TCGA.CM.6170	17	65979140	81048658	4447	-0.2663	NEUTRAL	NA	215	Too-Many
TCGA.AA.3517	17	66022659	73641051	2659	0.0012	NEUTRAL	NA	71	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARMC7,ARSG,ATP5H,BTBD17,C17orf77,C17orf80,CASKIN2,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CDR2L,COG1,CPSF4L,DNAI2,FADS6,FAM104A,FAM20A,FDXR,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,HID1,HN1,ICT1,KCNJ16,KCNJ2,KCTD2,KIAA0195,KIF19,KPNA2,LLGL2,LOC100134391,MAP2K6,MIF4GD,MRPS7,NAT9,NT5C,NUP85,OTOP2,OTOP3,PRKAR1A,RAB37,RECQL5,RPL38,SDK2,SLC16A5,SLC16A6,SLC25A19,SLC39A11,SLC9A3R1,SMIM5,SOX9,SSTR2,SUMO2,TMEM104,TSEN54,TTYH2,USH1G,WIPI1"
TCGA.AA.A010.01A	17	66033188	66252917	13	-0.0971	NEUTRAL	NA	2	"AMZ2,KPNA2"
TCGA.AA.A01Q.01A	17	66265200	66979819	87	0.1511	NEUTRAL	NA	7	"ABCA8,ABCA9,ARSG,FAM20A,PRKAR1A,SLC16A6,WIPI1"
TCGA.AA.3862.01A	17	66266932	71204416	275	-0.052	NEUTRAL	NA	18	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ARSG,COG1,FAM104A,FAM20A,KCNJ16,KCNJ2,MAP2K6,PRKAR1A,SLC16A6,SLC39A11,SOX9,SSTR2,WIPI1"
TCGA.A6.3808.01A	17	66268733	72791104	450	0.3303	NEUTRAL	NA	41	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ARSG,BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,COG1,CPSF4L,DNAI2,FAM104A,FAM20A,GPR142,GPRC5C,KCNJ16,KCNJ2,KIF19,LOC100134391,MAP2K6,NAT9,PRKAR1A,RAB37,RPL38,SDK2,SLC16A6,SLC39A11,SLC9A3R1,SOX9,SSTR2,TMEM104,TTYH2,WIPI1"
TCGA.AG.4009.01A	17	66303598	66429560	18	0.3504	NEUTRAL	NA	3	"ARSG,PRKAR1A,WIPI1"
TCGA.AA.A00D.01A	17	66339726	66417849	11	0.0781	NEUTRAL	NA	3	"ARSG,PRKAR1A,WIPI1"
TCGA.AG.A00C.01A	17	66339726	66426085	16	-0.2865	NEUTRAL	NA	3	"ARSG,PRKAR1A,WIPI1"
TCGA.AF.2689	17	66371272	70937614	1757	0.1814	NEUTRAL	NA	14	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ARSG,FAM20A,KCNJ16,KCNJ2,MAP2K6,PRKAR1A,SLC39A11,SOX9,WIPI1"
TCGA.CK.5914.01A	17	66417849	67098929	122	0.0537	NEUTRAL	NA	6	"ABCA6,ABCA8,ABCA9,FAM20A,PRKAR1A,WIPI1"
TCGA.AA.A03J	17	66425270	81048658	4255	0.0152	NEUTRAL	NA	209	Too-Many
TCGA.AG.A00C.01A	17	66429560	66526376	16	0.2506	NEUTRAL	NA	2	"PRKAR1A,WIPI1"
TCGA.AG.4009.01A	17	66430635	66533569	16	-0.2305	NEUTRAL	NA	3	"FAM20A,PRKAR1A,WIPI1"
TCGA.AG.3891.01A	17	66446822	67501867	202	-0.1626	NEUTRAL	NA	9	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,FAM20A,MAP2K6,PRKAR1A,WIPI1"
TCGA.AA.A02H.01A	17	66518870	66865784	19	0.2165	NEUTRAL	NA	3	"ABCA8,FAM20A,PRKAR1A"
TCGA.AA.A01I.01A	17	66518870	67183795	143	0.2086	NEUTRAL	NA	6	"ABCA10,ABCA6,ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.AA.A01C.01A	17	66520980	67087247	98	0.2918	NEUTRAL	NA	5	"ABCA6,ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.AA.A02E.01A	17	66523965	66978642	49	-0.1167	NEUTRAL	NA	4	"ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.AA.A00D.01A	17	66526376	67152922	128	0.2985	NEUTRAL	NA	6	"ABCA10,ABCA6,ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.AG.A00C.01A	17	66533569	67152922	127	-0.1955	NEUTRAL	NA	6	"ABCA10,ABCA6,ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.AA.A010.01A	17	66535406	67013748	62	0.3149	NEUTRAL	NA	4	"ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.AG.4009.01A	17	66535406	67148142	119	0.2783	NEUTRAL	NA	6	"ABCA10,ABCA6,ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.CA.5254	17	66545344	67661068	355	-0.001	NEUTRAL	NA	8	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,FAM20A,MAP2K6,PRKAR1A"
TCGA.AA.3850	17	66554098	70043417	1269	-0.29565	NEUTRAL	NA	9	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,FAM20A,KCNJ16,KCNJ2,MAP2K6"
TCGA.AA.3968	17	66600044	66667914	36	0.1507	NEUTRAL	NA	0	None
TCGA.DC.6682	17	66659296	67551460	292	0.1248	NEUTRAL	NA	6	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,MAP2K6"
TCGA.AA.3968	17	66670125	66760024	41	0.0196	NEUTRAL	NA	0	None
TCGA.AA.3844	17	66685866	70142595	1249	-0.2656	NEUTRAL	NA	9	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,KCNJ16,KCNJ2,MAP2K6,SOX9"
TCGA.AH.6643	17	66780394	66808442	22	-0.0871	NEUTRAL	NA	0	None
TCGA.AA.3982	17	66810746	70040659	1149	0.0416	NEUTRAL	NA	8	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,KCNJ16,KCNJ2,MAP2K6"
TCGA.AH.6643	17	66810746	81048658	4172	-0.3945	NEUTRAL	NA	206	Too-Many
TCGA.AA.3811	17	66815636	70037443	1139	-0.2119	NEUTRAL	NA	8	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,KCNJ16,KCNJ2,MAP2K6"
TCGA.AA.A02H.01A	17	66877210	66903834	15	-0.0709	NEUTRAL	NA	1	ABCA8
TCGA.AA.A02H.01A	17	66982253	67004154	9	-0.1139	NEUTRAL	NA	1	ABCA9
TCGA.AA.A02E.01A	17	66985117	67081138	36	-0.1977	NEUTRAL	NA	2	"ABCA6,ABCA9"
TCGA.AA.A01Q.01A	17	66985117	67181571	83	0.0342	NEUTRAL	NA	3	"ABCA10,ABCA6,ABCA9"
TCGA.AA.A010.01A	17	67014522	67087247	31	-0.2719	NEUTRAL	NA	2	"ABCA6,ABCA9"
TCGA.AA.A02E.01A	17	67081715	67103798	14	-0.4884	NEUTRAL	NA	1	ABCA6
TCGA.AA.A02H.01A	17	67082729	67087247	5	0.3123	NEUTRAL	NA	1	ABCA6
TCGA.AA.A00N.01A	17	67087247	67125733	20	0.2906	NEUTRAL	NA	1	ABCA6
TCGA.AA.A02E.01A	17	67106904	67178779	33	-0.1376	NEUTRAL	NA	2	"ABCA10,ABCA6"
TCGA.AA.3968	17	67123910	69878733	986	0.0197	NEUTRAL	NA	6	"ABCA10,ABCA5,ABCA6,KCNJ16,KCNJ2,MAP2K6"
TCGA.AA.A02H.01A	17	67129733	67187275	26	0.3247	NEUTRAL	NA	2	"ABCA10,ABCA6"
TCGA.AA.A010.01A	17	67130728	67161084	16	-0.0536	NEUTRAL	NA	2	"ABCA10,ABCA6"
TCGA.AA.A01C.01A	17	67130728	67183795	23	0.2982	NEUTRAL	NA	2	"ABCA10,ABCA6"
TCGA.AG.4009.01A	17	67148485	67171497	12	0.0272	NEUTRAL	NA	1	ABCA10
TCGA.AG.3909.01A	17	67151895	67178779	9	-0.0022	NEUTRAL	NA	1	ABCA10
TCGA.AG.A00C.01A	17	67160164	67211906	20	0.3045	NEUTRAL	NA	1	ABCA10
TCGA.CK.5914.01A	17	67170731	67181571	5	0.0407	NEUTRAL	NA	1	ABCA10
TCGA.AG.4009.01A	17	67178262	67197610	13	-0.5034	NEUTRAL	NA	1	ABCA10
TCGA.AA.A010.01A	17	67181571	67285974	43	0.0233	NEUTRAL	NA	2	"ABCA10,ABCA5"
TCGA.AA.A004.01A	17	67181571	81006295	1011	-0.1814	NEUTRAL	NA	202	Too-Many
TCGA.AA.A02K.01A	17	67183776	67212362	13	0.1808	NEUTRAL	NA	1	ABCA10
TCGA.AA.A01Q.01A	17	67183795	67197610	10	-0.4272	NEUTRAL	NA	1	ABCA10
TCGA.AG.A023.01A	17	67183795	67244379	19	-0.1594	NEUTRAL	NA	2	"ABCA10,ABCA5"
TCGA.AA.A01C.01A	17	67186475	67218637	15	-0.2721	NEUTRAL	NA	1	ABCA10
TCGA.AA.A01I.01A	17	67186475	67218637	15	-0.4328	NEUTRAL	NA	1	ABCA10
TCGA.DM.A28M.01A	17	67186475	67218637	15	0.2211	NEUTRAL	NA	1	ABCA10
TCGA.AA.A00N.01A	17	67210816	67218637	6	-0.4208	NEUTRAL	NA	1	ABCA10
TCGA.AG.3909.01A	17	67210816	67221381	7	0.0743	NEUTRAL	NA	1	ABCA10
TCGA.AG.4009.01A	17	67210816	68131187	58	0.1703	NEUTRAL	NA	4	"ABCA10,ABCA5,KCNJ16,MAP2K6"
TCGA.AA.A01Q.01A	17	67210816	71084744	71	0.1161	NEUTRAL	NA	7	"ABCA10,ABCA5,KCNJ16,KCNJ2,MAP2K6,SLC39A11,SOX9"
TCGA.AG.A00C.01A	17	67212317	71084744	69	-0.0892	NEUTRAL	NA	7	"ABCA10,ABCA5,KCNJ16,KCNJ2,MAP2K6,SLC39A11,SOX9"
TCGA.AA.A02K.01A	17	67215656	68906063	78	-0.145	NEUTRAL	NA	5	"ABCA10,ABCA5,KCNJ16,KCNJ2,MAP2K6"
TCGA.AA.A02H.01A	17	67218637	67285974	27	0.3556	NEUTRAL	NA	2	"ABCA10,ABCA5"
TCGA.AA.A00D.01A	17	67218637	67290739	29	0.3681	NEUTRAL	NA	2	"ABCA10,ABCA5"
TCGA.CK.5914.01A	17	67218637	68171152	54	0.2922	NEUTRAL	NA	5	"ABCA10,ABCA5,KCNJ16,KCNJ2,MAP2K6"
TCGA.AA.A00N.01A	17	67221381	67244379	3	0.2519	NEUTRAL	NA	2	"ABCA10,ABCA5"
TCGA.AA.A01C.01A	17	67221381	67285286	25	0.139	NEUTRAL	NA	2	"ABCA10,ABCA5"
TCGA.AA.A01I.01A	17	67221381	67293290	29	0.0517	NEUTRAL	NA	2	"ABCA10,ABCA5"
TCGA.AY.A8YK	17	67255385	69373256	757	-0.0858	NEUTRAL	NA	4	"ABCA5,KCNJ16,KCNJ2,MAP2K6"
TCGA.AZ.4684.01A	17	67260847	68175934	45	0.2329	NEUTRAL	NA	4	"ABCA5,KCNJ16,KCNJ2,MAP2K6"
TCGA.AA.3509.01A	17	67260847	81051974	1853	-0.1233	NEUTRAL	NA	202	Too-Many
TCGA.AG.3909.01A	17	67283702	67293290	6	0.1247	NEUTRAL	NA	1	ABCA5
TCGA.DM.A28M.01A	17	67287340	81051974	1839	0.1737	NEUTRAL	NA	202	Too-Many
TCGA.AG.3909.01A	17	67297278	67310408	8	-0.2726	NEUTRAL	NA	1	ABCA5
TCGA.AG.A023.01A	17	67305352	81051974	1110	-0.0814	NEUTRAL	NA	202	Too-Many
TCGA.AA.A02H.01A	17	67310408	67513603	5	0.3024	NEUTRAL	NA	2	"ABCA5,MAP2K6"
TCGA.AA.A01I.01A	17	67310408	70119637	19	-0.0113	NEUTRAL	NA	5	"ABCA5,KCNJ16,KCNJ2,MAP2K6,SOX9"
TCGA.AA.A01C.01A	17	67310408	81051974	1243	-0.1541	NEUTRAL	NA	202	Too-Many
TCGA.AA.A010.01A	17	67411036	68131187	15	0.3769	NEUTRAL	NA	2	"KCNJ16,MAP2K6"
TCGA.D5.6929	17	67471750	81048658	3994	0.2882	NEUTRAL	NA	201	Too-Many
TCGA.AG.A016.01A	17	67501867	67537815	11	0.304	NEUTRAL	NA	1	MAP2K6
TCGA.AG.3891.01A	17	67512919	72838524	196	0.171	NEUTRAL	NA	32	"BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,COG1,CPSF4L,DNAI2,FAM104A,GPR142,GPRC5C,GRIN2C,KCNJ16,KCNJ2,KIF19,LOC100134391,MAP2K6,NAT9,RAB37,RPL38,SDK2,SLC39A11,SLC9A3R1,SOX9,SSTR2,TMEM104,TTYH2"
TCGA.AA.A00D.01A	17	67515405	71192598	28	0.3236	NEUTRAL	NA	7	"COG1,KCNJ16,KCNJ2,MAP2K6,SLC39A11,SOX9,SSTR2"
TCGA.AA.A02H.01A	17	67515405	81006295	1044	-0.2467	NEUTRAL	NA	200	Too-Many
TCGA.CM.6166	17	67523259	68416551	302	-0.0137	NEUTRAL	NA	3	"KCNJ16,KCNJ2,MAP2K6"
TCGA.AF.2692	17	67553140	68073649	137	-0.0455	NEUTRAL	NA	1	KCNJ16
TCGA.G4.6322	17	67596040	67925638	77	-0.3577	NEUTRAL	NA	0	None
TCGA.AZ.4616	17	67633171	81048658	3945	0.2805	NEUTRAL	NA	200	Too-Many
TCGA.DC.6682	17	67740382	68010145	75	0.1592	NEUTRAL	NA	0	None
TCGA.G4.6322	17	67925760	69775369	745	0.0117	NEUTRAL	NA	2	"KCNJ16,KCNJ2"
TCGA.AF.2692	17	68074318	68435904	156	-0.4329	NEUTRAL	NA	2	"KCNJ16,KCNJ2"
TCGA.AG.A016.01A	17	68128227	81042842	1217	-0.0995	NEUTRAL	NA	200	Too-Many
TCGA.CA.5254	17	68148810	81048658	3789	-0.0492	NEUTRAL	NA	199	Too-Many
TCGA.AG.3909.01A	17	68171152	70643661	9	-0.1706	NEUTRAL	NA	3	"KCNJ2,SLC39A11,SOX9"
TCGA.AA.3930.01A	17	68175319	70118809	4	-0.2206	NEUTRAL	NA	2	"KCNJ2,SOX9"
TCGA.CK.5914.01A	17	68175934	71084744	13	0.1464	NEUTRAL	NA	3	"KCNJ2,SLC39A11,SOX9"
TCGA.DC.6682	17	68187966	69559562	583	0.1172	NEUTRAL	NA	0	None
TCGA.AF.2692	17	68436384	81048658	3678	0.0086	NEUTRAL	NA	198	Too-Many
TCGA.CM.6166	17	68539111	69043849	211	0.0395	NEUTRAL	NA	0	None
TCGA.AA.A01Z	17	68731218	68737364	4	-0.1184	NEUTRAL	NA	0	None
TCGA.AA.A02K.01A	17	68930000	70645282	14	-0.1765	NEUTRAL	NA	2	"SLC39A11,SOX9"
TCGA.AA.A01Z	17	69197423	70486681	534	0.0044	NEUTRAL	NA	1	SOX9
TCGA.AA.3695	17	69490043	77243062	2445	0.1283	NEUTRAL	NA	118	Too-Many
TCGA.AA.3673	17	69616365	81048658	3190	-0.4911	NEUTRAL	NA	198	Too-Many
TCGA.CM.6166	17	69617434	72961012	1297	-0.015	NEUTRAL	NA	35	"BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,COG1,CPSF4L,DNAI2,FADS6,FAM104A,FDXR,GPR142,GPRC5C,GRIN2C,HID1,KIF19,LOC100134391,NAT9,OTOP2,OTOP3,RAB37,RPL38,SDK2,SLC39A11,SLC9A3R1,SOX9,SSTR2,TMEM104,TTYH2,USH1G"
TCGA.AA.3811	17	70040326	77243062	2239	0.2457	NEUTRAL	NA	118	Too-Many
TCGA.AA.3850	17	70046299	70140484	34	0.14225	NEUTRAL	NA	1	SOX9
TCGA.AG.A01W.01A	17	70053401	70236944	18	-0.3961	NEUTRAL	NA	1	SOX9
TCGA.AZ.4684.01A	17	70117514	81051974	1808	-0.155	NEUTRAL	NA	198	Too-Many
TCGA.AA.3930.01A	17	70119637	73497860	373	0.1951	NEUTRAL	NA	52	"ARMC7,ATP5H,BTBD17,C17orf77,C17orf80,CASKIN2,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CDR2L,COG1,CPSF4L,DNAI2,FADS6,FAM104A,FDXR,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,HID1,HN1,ICT1,KCTD2,KIAA0195,KIF19,LOC100134391,MIF4GD,MRPS7,NAT9,NT5C,NUP85,OTOP2,OTOP3,RAB37,RPL38,SDK2,SLC16A5,SLC25A19,SLC39A11,SLC9A3R1,SOX9,SSTR2,SUMO2,TMEM104,TTYH2,USH1G"
TCGA.AA.3844	17	70142677	81048658	2984	0.2162	NEUTRAL	NA	197	Too-Many
TCGA.AG.3883	17	70150580	81048658	2992	0.0933	NEUTRAL	NA	197	Too-Many
TCGA.AA.3968	17	70159654	72117227	855	0.0099	NEUTRAL	NA	9	"C17orf80,CDC42EP4,COG1,CPSF4L,FAM104A,LOC100134391,SDK2,SLC39A11,SSTR2"
TCGA.G5.6233	17	70205790	70883043	317	-0.2939	NEUTRAL	NA	1	SLC39A11
TCGA.AG.A01W.01A	17	70248465	70372490	38	0.0163	NEUTRAL	NA	0	None
TCGA.AG.A020	17	70253898	81048658	2938	-0.0601	NEUTRAL	NA	197	Too-Many
TCGA.AA.3941	17	70320845	70362578	24	0.0359	NEUTRAL	NA	0	None
TCGA.AA.3941	17	70384498	81048658	2853	0.1185	NEUTRAL	NA	197	Too-Many
TCGA.AF.A56K	17	70387035	81048658	2859	0.0843	NEUTRAL	NA	197	Too-Many
TCGA.G4.6322	17	70390451	81048658	2861	-0.026	NEUTRAL	NA	197	Too-Many
TCGA.DM.A1D0	17	70400165	70471507	24	-0.3929	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	17	70400210	70998340	128	-0.1518	NEUTRAL	NA	1	SLC39A11
TCGA.AA.3855	17	70445917	81048658	2821	-0.0276	NEUTRAL	NA	197	Too-Many
TCGA.DM.A1D0	17	70478050	81048658	2804	0.2909	NEUTRAL	NA	197	Too-Many
TCGA.AG.3581	17	70506838	73837141	1056	0.3237	NEUTRAL	NA	62	"ARMC7,ATP5H,BTBD17,C17orf77,C17orf80,CASKIN2,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CDR2L,COG1,CPSF4L,DNAI2,FADS6,FAM104A,FDXR,GALK1,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,H3F3B,HID1,HN1,ICT1,ITGB4,KCTD2,KIAA0195,KIF19,LLGL2,LOC100134391,MIF4GD,MRPS7,NAT9,NT5C,NUP85,OTOP2,OTOP3,RAB37,RECQL5,RPL38,SAP30BP,SDK2,SLC16A5,SLC25A19,SLC39A11,SLC9A3R1,SMIM5,SMIM6,SSTR2,SUMO2,TMEM104,TSEN54,TTYH2,UNC13D,UNK,USH1G"
TCGA.A6.6138	17	70548956	77243062	2018	-0.0096	NEUTRAL	NA	117	Too-Many
TCGA.AA.3688	17	70548956	81048658	2804	0.0645	NEUTRAL	NA	197	Too-Many
TCGA.DM.A28H	17	70548956	81048658	2801	0.0047	NEUTRAL	NA	197	Too-Many
TCGA.AG.3611.01A	17	70643661	72923250	200	-0.4494	NEUTRAL	NA	32	"BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,COG1,CPSF4L,DNAI2,FADS6,FAM104A,FDXR,GPR142,GPRC5C,GRIN2C,KIF19,LOC100134391,NAT9,OTOP2,RAB37,RPL38,SDK2,SLC39A11,SLC9A3R1,SSTR2,TMEM104,TTYH2,USH1G"
TCGA.AA.A01I.01A	17	70643661	78262404	840	-0.3862	NEUTRAL	NA	129	Too-Many
TCGA.AG.4009.01A	17	70644902	71165407	9	0.3357	NEUTRAL	NA	2	"SLC39A11,SSTR2"
TCGA.A6.6648	17	70732353	81048658	2724	0.1657	NEUTRAL	NA	197	Too-Many
TCGA.AU.3779	17	70879559	81048658	2643	0.2007	NEUTRAL	NA	197	Too-Many
TCGA.G5.6233	17	70883362	81048658	2639	0.034	NEUTRAL	NA	197	Too-Many
TCGA.AF.2689	17	70938619	72278797	521	-0.1063	NEUTRAL	NA	12	"C17orf80,CDC42EP4,COG1,CPSF4L,DNAI2,FAM104A,LOC100134391,RPL38,SDK2,SLC39A11,SSTR2,TTYH2"
TCGA.AY.A8YK	17	70992565	71551903	196	-0.0685	NEUTRAL	NA	8	"C17orf80,CDC42EP4,COG1,CPSF4L,FAM104A,SDK2,SLC39A11,SSTR2"
TCGA.AA.3986	17	71042472	77243062	1774	0.0779	NEUTRAL	NA	117	Too-Many
TCGA.AG.A01W.01A	17	71065771	71139085	20	0.2066	NEUTRAL	NA	1	SLC39A11
TCGA.AA.A02K.01A	17	71084745	79857122	1481	-0.0712	NEUTRAL	NA	161	Too-Many
TCGA.AG.A01W.01A	17	71147832	71210921	18	-0.5022	NEUTRAL	NA	3	"COG1,FAM104A,SSTR2"
TCGA.D5.6932	17	71157264	81048658	2512	0.0851	NEUTRAL	NA	196	Too-Many
TCGA.AG.3909.01A	17	71165407	71281527	22	-0.4616	NEUTRAL	NA	6	"C17orf80,CDC42EP4,COG1,CPSF4L,FAM104A,SSTR2"
TCGA.AA.A01Q.01A	17	71165407	71398048	48	-0.2302	NEUTRAL	NA	7	"C17orf80,CDC42EP4,COG1,CPSF4L,FAM104A,SDK2,SSTR2"
TCGA.AG.4009.01A	17	71192598	71208751	13	-0.1981	NEUTRAL	NA	2	"COG1,FAM104A"
TCGA.AA.3861.01A	17	71199731	72791104	180	-0.4814	NEUTRAL	NA	25	"BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,COG1,CPSF4L,DNAI2,FAM104A,GPR142,GPRC5C,KIF19,LOC100134391,NAT9,RAB37,RPL38,SDK2,SLC9A3R1,TMEM104,TTYH2"
TCGA.AG.3906.01A	17	71205617	71241219	9	0.2278	NEUTRAL	NA	2	"C17orf80,FAM104A"
TCGA.AG.A01W.01A	17	71211419	71238914	12	0.0882	NEUTRAL	NA	2	"C17orf80,FAM104A"
TCGA.AG.A01W.01A	17	71239437	71257756	13	-0.3684	NEUTRAL	NA	2	"C17orf80,CPSF4L"
TCGA.CK.5914.01A	17	71243358	72337968	85	0.0531	NEUTRAL	NA	9	"C17orf80,CDC42EP4,CPSF4L,DNAI2,KIF19,LOC100134391,RPL38,SDK2,TTYH2"
TCGA.AG.A00C.01A	17	71243358	72740964	118	-0.1686	NEUTRAL	NA	20	"BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CPSF4L,DNAI2,GPR142,GPRC5C,KIF19,LOC100134391,RAB37,RPL38,SDK2,TTYH2"
TCGA.AM.5820	17	71249029	81048658	2486	0.2849	NEUTRAL	NA	192	Too-Many
TCGA.AA.A00D.01A	17	71281527	72233391	42	0.2439	NEUTRAL	NA	5	"CDC42EP4,LOC100134391,RPL38,SDK2,TTYH2"
TCGA.AG.A01W.01A	17	71322800	72989804	327	-0.0639	NEUTRAL	NA	28	"BTBD17,C17orf77,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDR2L,DNAI2,FADS6,FDXR,GPR142,GPRC5C,GRIN2C,HID1,KIF19,LOC100134391,NAT9,OTOP2,OTOP3,RAB37,RPL38,SDK2,SLC9A3R1,TMEM104,TTYH2,USH1G"
TCGA.AG.3906.01A	17	71381922	71433832	20	0.0901	NEUTRAL	NA	1	SDK2
TCGA.AA.A01Q.01A	17	71410736	71451998	14	0.1096	NEUTRAL	NA	1	SDK2
TCGA.AA.A00O.01A	17	71429830	81042842	991	-0.3236	NEUTRAL	NA	190	Too-Many
TCGA.AM.5821	17	71752572	78929019	1970	0.1457	NEUTRAL	NA	124	Too-Many
TCGA.AA.3968	17	72118401	77252526	1344	0.3741	NEUTRAL	NA	108	Too-Many
TCGA.AF.A56L	17	72174921	74036572	376	0.1044	NEUTRAL	NA	63	"ACOX1,ARMC7,ATP5H,BTBD17,C17orf77,CASKIN2,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDK3,CDR2L,DNAI2,EVPL,FADS6,FBF1,FDXR,GALK1,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,H3F3B,HID1,HN1,ICT1,ITGB4,KCTD2,KIAA0195,KIF19,LLGL2,MIF4GD,MRPL38,MRPS7,NAT9,NT5C,NUP85,OTOP2,OTOP3,RAB37,RECQL5,RPL38,SAP30BP,SLC16A5,SLC25A19,SLC9A3R1,SMIM5,SMIM6,SRP68,SUMO2,TEN1,TMEM104,TRIM47,TRIM65,TSEN54,TTYH2,UNC13D,UNK,USH1G,WBP2"
TCGA.AG.4009.01A	17	72199997	72218607	4	-0.3717	NEUTRAL	NA	2	"RPL38,TTYH2"
TCGA.AA.A00D.01A	17	72239463	72248325	7	-0.3936	NEUTRAL	NA	1	TTYH2
TCGA.AA.A01Q.01A	17	72246035	72310226	18	-0.2262	NEUTRAL	NA	2	"DNAI2,TTYH2"
TCGA.AA.A00D.01A	17	72249171	72959798	135	0.2881	NEUTRAL	NA	24	"BTBD17,C17orf77,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,DNAI2,FADS6,FDXR,GPR142,GPRC5C,GRIN2C,HID1,KIF19,NAT9,OTOP2,OTOP3,RAB37,SLC9A3R1,TMEM104,TTYH2,USH1G"
TCGA.AF.2689	17	72283580	81048658	2089	0.3038	NEUTRAL	NA	186	Too-Many
TCGA.AA.A00N.01A	17	72310226	72445392	33	-0.444	NEUTRAL	NA	5	"BTBD17,DNAI2,GPR142,GPRC5C,KIF19"
TCGA.AG.3909.01A	17	72322431	72442938	28	-0.1282	NEUTRAL	NA	4	"BTBD17,GPR142,GPRC5C,KIF19"
TCGA.AG.4009.01A	17	72322431	72442938	22	-0.1955	NEUTRAL	NA	4	"BTBD17,GPR142,GPRC5C,KIF19"
TCGA.CK.5914.01A	17	72338716	72445392	29	-0.4943	NEUTRAL	NA	4	"BTBD17,GPR142,GPRC5C,KIF19"
TCGA.AA.3972	17	72382916	72534874	36	0.276	NEUTRAL	NA	3	"CD300A,CD300LB,GPRC5C"
TCGA.AA.A010.01A	17	72428130	72445392	7	0.076	NEUTRAL	NA	1	GPRC5C
TCGA.AA.A01Q.01A	17	72462762	72588148	18	-0.0641	NEUTRAL	NA	5	"C17orf77,CD300A,CD300C,CD300LB,CD300LD"
TCGA.AA.3972	17	72535320	72711427	75	0.0052	NEUTRAL	NA	6	"C17orf77,CD300C,CD300E,CD300LD,CD300LF,RAB37"
TCGA.AA.3664	17	72640691	81048658	1968	0.0541	NEUTRAL	NA	175	Too-Many
TCGA.CK.5914.01A	17	72692258	72764555	19	-0.1589	NEUTRAL	NA	3	"CD300LF,RAB37,SLC9A3R1"
TCGA.AA.3972	17	72712361	74917852	445	0.2878	NEUTRAL	NA	71	"AANAT,ACOX1,ARMC7,ATP5H,CASKIN2,CDK3,CDR2L,CYGB,EVPL,EXOC7,FADS6,FBF1,FDXR,FOXJ1,GALK1,GALR2,GGA3,GRB2,GRIN2C,H3F3B,HID1,HN1,ICT1,ITGB4,JMJD6,KCTD2,KIAA0195,LLGL2,METTL23,MFSD11,MGAT5B,MIF4GD,MRPL38,MRPS7,MXRA7,NAT9,NT5C,NUP85,OTOP2,OTOP3,PRCD,PRPSAP1,QRICH2,RAB37,RECQL5,RHBDF2,RNF157,SAP30BP,SLC16A5,SLC25A19,SLC9A3R1,SMIM5,SMIM6,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SUMO2,TEN1,TMEM104,TRIM47,TRIM65,TSEN54,UBALD2,UBE2O,UNC13D,UNK,USH1G,WBP2,ZACN"
TCGA.AG.3909.01A	17	72725348	72759464	10	0.0262	NEUTRAL	NA	2	"RAB37,SLC9A3R1"
TCGA.AA.A010.01A	17	72725348	72791635	25	-0.2339	NEUTRAL	NA	4	"NAT9,RAB37,SLC9A3R1,TMEM104"
TCGA.AG.3906.01A	17	72736900	72741408	6	-0.1607	NEUTRAL	NA	1	RAB37
TCGA.AG.4009.01A	17	72736900	72741408	6	-0.2865	NEUTRAL	NA	1	RAB37
TCGA.AG.A00C.01A	17	72741408	81051974	1115	0.1574	NEUTRAL	NA	174	Too-Many
TCGA.AG.4009.01A	17	72758134	72769663	8	0.293	NEUTRAL	NA	2	"NAT9,SLC9A3R1"
TCGA.AA.A01K.01A	17	72771713	78320306	647	-0.3409	NEUTRAL	NA	104	Too-Many
TCGA.AG.3909.01A	17	72781572	72888599	32	0.2757	NEUTRAL	NA	4	"FADS6,FDXR,GRIN2C,TMEM104"
TCGA.AA.3861.01A	17	72791635	73205916	95	0.2016	NEUTRAL	NA	18	"ARMC7,ATP5H,CDR2L,FADS6,FDXR,GRIN2C,HID1,HN1,ICT1,KCTD2,NT5C,NUP85,OTOP2,OTOP3,SLC16A5,SUMO2,TMEM104,USH1G"
TCGA.AG.4009.01A	17	72832028	73201772	81	-0.2163	NEUTRAL	NA	18	"ARMC7,ATP5H,CDR2L,FADS6,FDXR,GRIN2C,HID1,HN1,ICT1,KCTD2,NT5C,NUP85,OTOP2,OTOP3,SLC16A5,SUMO2,TMEM104,USH1G"
TCGA.AA.3862.01A	17	72838524	73142670	89	0.1644	NEUTRAL	NA	15	"ARMC7,ATP5H,CDR2L,FADS6,FDXR,GRIN2C,HID1,HN1,ICT1,KCTD2,NT5C,OTOP2,OTOP3,SLC16A5,USH1G"
TCGA.AD.6890	17	72884895	79253577	1657	0.2283	NEUTRAL	NA	110	Too-Many
TCGA.AA.A010.01A	17	72888599	73016969	44	-0.3757	NEUTRAL	NA	7	"CDR2L,FADS6,HID1,ICT1,OTOP2,OTOP3,USH1G"
TCGA.AG.3891.01A	17	72914073	73008760	31	0.1758	NEUTRAL	NA	6	"CDR2L,HID1,ICT1,OTOP2,OTOP3,USH1G"
TCGA.AG.3611.01A	17	72942729	76802196	549	-0.3944	NEUTRAL	NA	78	"AANAT,ACOX1,AFMID,ARMC7,ATP5H,BIRC5,C17orf99,CASKIN2,CDK3,CDR2L,CYGB,CYTH1,DNAH17,EVPL,EXOC7,FBF1,FOXJ1,GALK1,GALR2,GGA3,GRB2,H3F3B,HID1,HN1,ICT1,ITGB4,JMJD6,KCTD2,KIAA0195,LLGL2,METTL23,MFSD11,MGAT5B,MIF4GD,MRPL38,MRPS7,MXRA7,NT5C,NUP85,OTOP3,PGS1,PRCD,PRPSAP1,QRICH2,RECQL5,RHBDF2,RNF157,SAP30BP,SEC14L1,SEPT9,SLC16A5,SLC25A19,SMIM5,SMIM6,SOCS3,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SUMO2,SYNGR2,TEN1,TK1,TMC6,TMC8,TMEM235,TNRC6C,TRIM47,TRIM65,TSEN54,UBALD2,UBE2O,UNC13D,UNK,USP36,WBP2,ZACN"
TCGA.AG.A025.01A	17	73034975	81051974	1039	-0.3008	NEUTRAL	NA	161	Too-Many
TCGA.AA.A010.01A	17	73089741	73127074	9	0.008	NEUTRAL	NA	3	"ARMC7,NT5C,SLC16A5"
TCGA.AG.3891.01A	17	73089741	73921378	229	0.214	NEUTRAL	NA	29	"ARMC7,CASKIN2,FBF1,GALK1,GGA3,GRB2,H3F3B,HN1,ITGB4,KIAA0195,LLGL2,MIF4GD,MRPL38,MRPS7,NT5C,NUP85,RECQL5,SAP30BP,SLC16A5,SLC25A19,SMIM5,SMIM6,SUMO2,TRIM47,TRIM65,TSEN54,UNC13D,UNK,WBP2"
TCGA.AA.A01Q.01A	17	73106333	73504243	95	-0.2579	NEUTRAL	NA	12	"ARMC7,CASKIN2,GGA3,GRB2,HN1,KIAA0195,MIF4GD,MRPS7,NT5C,NUP85,SLC25A19,SUMO2"
TCGA.AA.3862.01A	17	73143602	78023650	759	-0.4381	NEUTRAL	NA	82	"AANAT,ACOX1,AFMID,BIRC5,C17orf99,C1QTNF1,CANT1,CASKIN2,CBX2,CBX4,CBX8,CCDC40,CDK3,CEP295NL,CYGB,CYTH1,DNAH17,ENGASE,ENPP7,EVPL,EXOC7,FBF1,FOXJ1,GALK1,GALR2,GGA3,GRB2,H3F3B,HN1,ITGB4,JMJD6,KIAA0195,LGALS3BP,LLGL2,METTL23,MFSD11,MGAT5B,MIF4GD,MRPL38,MRPS7,MXRA7,NUP85,PGS1,PRCD,PRPSAP1,QRICH2,RBFOX3,RECQL5,RHBDF2,RNF157,SAP30BP,SEC14L1,SEPT9,SLC25A19,SMIM5,SMIM6,SOCS3,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SUMO2,SYNGR2,TBC1D16,TEN1,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,TRIM47,TRIM65,TSEN54,UBALD2,UBE2O,UNC13D,UNK,USP36,WBP2,ZACN"
TCGA.AA.A010.01A	17	73178819	73257923	32	0.0751	NEUTRAL	NA	4	"GGA3,MRPS7,NUP85,SUMO2"
TCGA.AA.3861.01A	17	73208023	78363605	864	-0.3402	NEUTRAL	NA	86	"AANAT,ACOX1,AFMID,BIRC5,C17orf99,C1QTNF1,CANT1,CARD14,CASKIN2,CBX2,CBX4,CBX8,CCDC40,CDK3,CEP295NL,CYGB,CYTH1,DNAH17,EIF4A3,ENGASE,ENPP7,EVPL,EXOC7,FBF1,FOXJ1,GAA,GALK1,GALR2,GGA3,GRB2,H3F3B,ITGB4,JMJD6,KIAA0195,LGALS3BP,LLGL2,METTL23,MFSD11,MGAT5B,MIF4GD,MRPL38,MRPS7,MXRA7,NUP85,PGS1,PRCD,PRPSAP1,QRICH2,RBFOX3,RECQL5,RHBDF2,RNF157,RNF213,SAP30BP,SEC14L1,SEPT9,SGSH,SLC25A19,SLC26A11,SMIM5,SMIM6,SOCS3,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SYNGR2,TBC1D16,TEN1,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,TRIM47,TRIM65,TSEN54,UBALD2,UBE2O,UNC13D,UNK,USP36,WBP2,ZACN"
TCGA.AG.3909.01A	17	73209091	73517826	80	-0.1663	NEUTRAL	NA	9	"CASKIN2,GGA3,GRB2,KIAA0195,MIF4GD,MRPS7,NUP85,SLC25A19,TSEN54"
TCGA.AA.A00N.01A	17	73211807	74539057	425	-0.474	NEUTRAL	NA	43	"AANAT,ACOX1,CASKIN2,CDK3,CYGB,EVPL,EXOC7,FBF1,FOXJ1,GALK1,GALR2,GGA3,GRB2,H3F3B,ITGB4,KIAA0195,LLGL2,MIF4GD,MRPL38,MRPS7,NUP85,PRCD,PRPSAP1,QRICH2,RECQL5,RHBDF2,RNF157,SAP30BP,SLC25A19,SMIM5,SMIM6,SPHK1,SRP68,TEN1,TRIM47,TRIM65,TSEN54,UBALD2,UBE2O,UNC13D,UNK,WBP2,ZACN"
TCGA.AG.4009.01A	17	73258531	73282366	13	-0.1255	NEUTRAL	NA	3	"MIF4GD,MRPS7,SLC25A19"
TCGA.AG.A01W.01A	17	73389566	73624887	23	0.2195	NEUTRAL	NA	6	"CASKIN2,GRB2,KIAA0195,LLGL2,RECQL5,TSEN54"
TCGA.AA.3556	17	73446890	73847798	56	0.0809	NEUTRAL	NA	14	"CASKIN2,GALK1,H3F3B,ITGB4,KIAA0195,LLGL2,RECQL5,SAP30BP,SMIM5,SMIM6,TSEN54,UNC13D,UNK,WBP2"
TCGA.AA.A010.01A	17	73482341	73488527	11	-0.4598	NEUTRAL	NA	1	KIAA0195
TCGA.AG.3906.01A	17	73486715	73501586	20	0.2971	NEUTRAL	NA	2	"CASKIN2,KIAA0195"
TCGA.AG.4009.01A	17	73490689	73502634	15	0.301	NEUTRAL	NA	2	"CASKIN2,KIAA0195"
TCGA.AA.3930.01A	17	73499713	73566993	30	-0.2868	NEUTRAL	NA	3	"CASKIN2,LLGL2,TSEN54"
TCGA.AG.4009.01A	17	73539447	73564510	8	0.105	NEUTRAL	NA	1	LLGL2
TCGA.AG.3909.01A	17	73539447	73627501	22	-0.0885	NEUTRAL	NA	2	"LLGL2,RECQL5"
TCGA.AA.A010.01A	17	73552080	73695807	42	0.1962	NEUTRAL	NA	5	"LLGL2,RECQL5,SAP30BP,SMIM5,SMIM6"
TCGA.AG.3906.01A	17	73554175	73646668	22	0.0238	NEUTRAL	NA	4	"LLGL2,RECQL5,SMIM5,SMIM6"
TCGA.AA.A01Q.01A	17	73564510	77753102	497	-0.2512	NEUTRAL	NA	67	"AANAT,ACOX1,AFMID,BIRC5,C17orf99,C1QTNF1,CANT1,CBX2,CDK3,CEP295NL,CYGB,CYTH1,DNAH17,ENGASE,ENPP7,EVPL,EXOC7,FBF1,FOXJ1,GALK1,GALR2,H3F3B,ITGB4,JMJD6,LGALS3BP,LLGL2,METTL23,MFSD11,MGAT5B,MRPL38,MXRA7,PGS1,PRCD,PRPSAP1,QRICH2,RBFOX3,RECQL5,RHBDF2,RNF157,SAP30BP,SEC14L1,SEPT9,SMIM5,SMIM6,SOCS3,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SYNGR2,TEN1,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,TRIM47,TRIM65,UBALD2,UBE2O,UNC13D,UNK,USP36,WBP2,ZACN"
TCGA.AA.3930.01A	17	73567728	74471085	294	0.1598	NEUTRAL	NA	32	"AANAT,ACOX1,CDK3,EVPL,EXOC7,FBF1,FOXJ1,GALK1,GALR2,H3F3B,ITGB4,LLGL2,MRPL38,PRPSAP1,QRICH2,RECQL5,RHBDF2,RNF157,SAP30BP,SMIM5,SMIM6,SPHK1,SRP68,TEN1,TRIM47,TRIM65,UBALD2,UBE2O,UNC13D,UNK,WBP2,ZACN"
TCGA.AG.A01W.01A	17	73642033	73694983	21	-0.0302	NEUTRAL	NA	3	"RECQL5,SAP30BP,SMIM6"
TCGA.AA.A010.01A	17	73698509	73774647	39	-0.2864	NEUTRAL	NA	4	"GALK1,H3F3B,ITGB4,SAP30BP"
TCGA.AG.4009.01A	17	73702400	73746145	19	-0.1086	NEUTRAL	NA	2	"ITGB4,SAP30BP"
TCGA.AG.3906.01A	17	73702400	73851251	59	0.2517	NEUTRAL	NA	7	"GALK1,H3F3B,ITGB4,SAP30BP,UNC13D,UNK,WBP2"
TCGA.AG.3909.01A	17	73720727	73927239	82	-0.2601	NEUTRAL	NA	10	"FBF1,GALK1,H3F3B,ITGB4,MRPL38,TRIM47,TRIM65,UNC13D,UNK,WBP2"
TCGA.AG.A01W.01A	17	73739135	74006638	55	0.0281	NEUTRAL	NA	14	"ACOX1,CDK3,EVPL,FBF1,GALK1,H3F3B,ITGB4,MRPL38,TEN1,TRIM47,TRIM65,UNC13D,UNK,WBP2"
TCGA.AA.A010.01A	17	73774964	73845664	39	0.3126	NEUTRAL	NA	4	"H3F3B,UNC13D,UNK,WBP2"
TCGA.AA.A01Z	17	73793024	76092552	648	0.0142	NEUTRAL	NA	37	"AANAT,ACOX1,CDK3,CYGB,EVPL,EXOC7,FBF1,FOXJ1,GALR2,JMJD6,METTL23,MFSD11,MGAT5B,MRPL38,MXRA7,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SEC14L1,SEPT9,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,TEN1,TNRC6C,TRIM47,TRIM65,UBALD2,UBE2O,UNC13D,UNK,WBP2,ZACN"
TCGA.AG.4009.01A	17	73896987	74053447	52	0.3608	NEUTRAL	NA	7	"ACOX1,CDK3,EVPL,FBF1,MRPL38,SRP68,TEN1"
TCGA.AA.A010.01A	17	73909735	73945281	21	-0.2141	NEUTRAL	NA	2	"ACOX1,FBF1"
TCGA.AG.3891.01A	17	73956266	74020053	21	0.0383	NEUTRAL	NA	4	"ACOX1,CDK3,EVPL,TEN1"
TCGA.AA.A010.01A	17	73982218	74001342	8	-0.1655	NEUTRAL	NA	2	"CDK3,TEN1"
TCGA.AG.A01W.01A	17	74007933	74074256	24	-0.4333	NEUTRAL	NA	3	"EVPL,GALR2,SRP68"
TCGA.AG.3909.01A	17	74013788	74570426	134	-0.2126	NEUTRAL	NA	17	"AANAT,CYGB,EVPL,EXOC7,FOXJ1,GALR2,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SPHK1,SRP68,ST6GALNAC2,UBALD2,UBE2O,ZACN"
TCGA.CK.5914.01A	17	74014530	74060017	21	0.0858	NEUTRAL	NA	2	"EVPL,SRP68"
TCGA.AA.A010.01A	17	74035776	74169741	64	-0.2906	NEUTRAL	NA	6	"EXOC7,FOXJ1,GALR2,RNF157,SRP68,ZACN"
TCGA.AG.4009.01A	17	74056334	74085218	22	-0.4095	NEUTRAL	NA	4	"EXOC7,GALR2,SRP68,ZACN"
TCGA.CK.5914.01A	17	74063250	74716391	155	-0.5043	NEUTRAL	NA	19	"AANAT,CYGB,EXOC7,FOXJ1,GALR2,JMJD6,MXRA7,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SPHK1,SRP68,ST6GALNAC1,ST6GALNAC2,UBALD2,UBE2O,ZACN"
TCGA.AA.A00L.01A	17	74068347	74080550	13	0.2281	NEUTRAL	NA	4	"EXOC7,GALR2,SRP68,ZACN"
TCGA.AG.3891.01A	17	74068347	74868780	155	0.2626	NEUTRAL	NA	23	"AANAT,CYGB,EXOC7,FOXJ1,GALR2,JMJD6,METTL23,MFSD11,MGAT5B,MXRA7,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,UBALD2,UBE2O,ZACN"
TCGA.AG.A01W.01A	17	74074631	75816162	195	0.0524	NEUTRAL	NA	23	"AANAT,CYGB,EXOC7,FOXJ1,JMJD6,METTL23,MFSD11,MGAT5B,MXRA7,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SEC14L1,SEPT9,SPHK1,SRSF2,ST6GALNAC1,ST6GALNAC2,UBALD2,UBE2O,ZACN"
TCGA.CK.4952.01A	17	74080326	78645394	803	-0.1328	NEUTRAL	NA	58	"AANAT,AFMID,BIRC5,C17orf99,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC40,CEP295NL,CYGB,CYTH1,DNAH17,EIF4A3,ENDOV,ENGASE,ENPP7,EXOC7,FOXJ1,GAA,JMJD6,LGALS3BP,METTL23,MFSD11,MGAT5B,MXRA7,NPTX1,PGS1,PRCD,PRPSAP1,QRICH2,RBFOX3,RHBDF2,RNF157,RNF213,RPTOR,SEC14L1,SEPT9,SGSH,SLC26A11,SOCS3,SPHK1,SRSF2,ST6GALNAC1,ST6GALNAC2,SYNGR2,TBC1D16,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,UBALD2,UBE2O,USP36"
TCGA.AG.4009.01A	17	74087179	74684135	105	0.0646	NEUTRAL	NA	15	"AANAT,CYGB,EXOC7,FOXJ1,MXRA7,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SPHK1,ST6GALNAC1,ST6GALNAC2,UBALD2,UBE2O"
TCGA.NH.A6GA	17	74115881	81048658	1725	-0.0512	NEUTRAL	NA	122	Too-Many
TCGA.AA.3517	17	74198817	74788739	157	0.0773	NEUTRAL	NA	17	"AANAT,CYGB,JMJD6,METTL23,MFSD11,MXRA7,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SPHK1,SRSF2,ST6GALNAC1,ST6GALNAC2,UBALD2,UBE2O"
TCGA.AA.A010.01A	17	74300459	74477405	47	-0.4176	NEUTRAL	NA	6	"AANAT,PRPSAP1,QRICH2,RHBDF2,SPHK1,UBE2O"
TCGA.AA.3930.01A	17	74473692	75478174	107	0.0976	NEUTRAL	NA	13	"CYGB,JMJD6,METTL23,MFSD11,MGAT5B,MXRA7,PRCD,RHBDF2,SEC14L1,SEPT9,SRSF2,ST6GALNAC1,ST6GALNAC2"
TCGA.AG.3906.01A	17	74564740	74639583	14	-0.0021	NEUTRAL	NA	2	"ST6GALNAC1,ST6GALNAC2"
TCGA.AG.3909.01A	17	74639583	74716391	9	0.248	NEUTRAL	NA	3	"JMJD6,MXRA7,ST6GALNAC1"
TCGA.AG.4009.01A	17	74712695	74739428	16	-0.4095	NEUTRAL	NA	4	"JMJD6,METTL23,MFSD11,SRSF2"
TCGA.AG.4009.01A	17	74740386	77043569	227	0.2627	NEUTRAL	NA	23	"AFMID,BIRC5,C17orf99,C1QTNF1,CANT1,CEP295NL,CYTH1,DNAH17,LGALS3BP,MFSD11,MGAT5B,PGS1,SEC14L1,SEPT9,SOCS3,SYNGR2,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,USP36"
TCGA.AA.A00N.01A	17	74763412	78093014	362	-0.4545	NEUTRAL	NA	32	"AFMID,BIRC5,C17orf99,C1QTNF1,CANT1,CBX2,CBX4,CBX8,CCDC40,CEP295NL,CYTH1,DNAH17,ENGASE,ENPP7,GAA,LGALS3BP,MFSD11,MGAT5B,PGS1,RBFOX3,SEC14L1,SEPT9,SOCS3,SYNGR2,TBC1D16,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,USP36"
TCGA.AG.3891.01A	17	74878182	74934022	9	-0.3432	NEUTRAL	NA	1	MGAT5B
TCGA.AG.3906.01A	17	74902073	76133761	70	0.0435	NEUTRAL	NA	6	"MGAT5B,SEC14L1,SEPT9,TMC6,TMC8,TNRC6C"
TCGA.AA.3972	17	74929997	81048658	1497	0.2051	NEUTRAL	NA	104	Too-Many
TCGA.AG.3909.01A	17	74934022	76491920	143	-0.221	NEUTRAL	NA	15	"AFMID,BIRC5,C17orf99,DNAH17,MGAT5B,PGS1,SEC14L1,SEPT9,SOCS3,SYNGR2,TK1,TMC6,TMC8,TMEM235,TNRC6C"
TCGA.AG.3891.01A	17	74936452	75471579	26	0.1154	NEUTRAL	NA	3	"MGAT5B,SEC14L1,SEPT9"
TCGA.AA.3517	17	74971902	76899064	605	-0.0039	NEUTRAL	NA	18	"AFMID,BIRC5,C17orf99,CEP295NL,CYTH1,DNAH17,PGS1,SEC14L1,SEPT9,SOCS3,SYNGR2,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,USP36"
TCGA.AA.A010.01A	17	75212537	75494567	21	-0.0252	NEUTRAL	NA	2	"SEC14L1,SEPT9"
TCGA.A6.6653	17	75397317	78628862	935	-0.058	NEUTRAL	NA	37	"AFMID,BIRC5,C17orf99,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC40,CEP295NL,CYTH1,DNAH17,EIF4A3,ENDOV,ENGASE,ENPP7,GAA,LGALS3BP,NPTX1,PGS1,RBFOX3,RNF213,RPTOR,SEPT9,SGSH,SLC26A11,SOCS3,SYNGR2,TBC1D16,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,USP36"
TCGA.AA.A00L.01A	17	75424983	76171557	29	0.3352	NEUTRAL	NA	7	"C17orf99,SEPT9,SYNGR2,TK1,TMC6,TMC8,TNRC6C"
TCGA.AG.3891.01A	17	75488660	79804265	515	0.0867	NEUTRAL	NA	63	"AATK,ACTG1,AFMID,ARL16,BAHCC1,BAIAP2,BIRC5,C17orf70,C17orf89,C17orf99,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CEP131,CEP295NL,CHMP6,CYTH1,DNAH17,EIF4A3,ENDOV,ENGASE,ENPP7,ENTHD2,FAM195B,FSCN2,GAA,GCGR,HGS,LGALS3BP,LOC100130370,MRPL12,NPLOC4,NPTX1,OXLD1,P4HB,PDE6G,PGS1,PPP1R27,RBFOX3,RNF213,RPTOR,SEPT9,SGSH,SLC25A10,SLC26A11,SLC38A10,SOCS3,SYNGR2,TBC1D16,TIMP2,TK1,TMC6,TMC8,TMEM105,TMEM235,TNRC6C,TSPAN10,USP36"
TCGA.DM.A1DB	17	75600977	81048658	1273	0.0286	NEUTRAL	NA	101	Too-Many
TCGA.AY.4070	17	75722431	81048658	1198	0.0434	NEUTRAL	NA	101	Too-Many
TCGA.AG.A01W.01A	17	75825286	75901386	26	-0.4942	NEUTRAL	NA	0	None
TCGA.G4.6295	17	75851465	81048658	1164	0.0168	NEUTRAL	NA	101	Too-Many
TCGA.AF.2693	17	75870951	76085740	37	-0.4501	NEUTRAL	NA	1	TNRC6C
TCGA.AA.3930.01A	17	75877986	76089674	18	0.238	NEUTRAL	NA	1	TNRC6C
TCGA.AG.A01W.01A	17	75905539	76537802	97	0.0932	NEUTRAL	NA	12	"AFMID,BIRC5,C17orf99,DNAH17,PGS1,SOCS3,SYNGR2,TK1,TMC6,TMC8,TMEM235,TNRC6C"
TCGA.AF.2693	17	76087177	81048658	1124	-0.0813	NEUTRAL	NA	101	Too-Many
TCGA.AA.A010.01A	17	76087479	76128403	25	-0.1024	NEUTRAL	NA	3	"TMC6,TMC8,TNRC6C"
TCGA.AA.3930.01A	17	76128813	76441611	59	0.2595	NEUTRAL	NA	10	"AFMID,BIRC5,C17orf99,DNAH17,PGS1,SOCS3,SYNGR2,TK1,TMC8,TMEM235"
TCGA.AA.A00A.01A	17	76201122	76354478	9	0.2778	NEUTRAL	NA	4	"AFMID,BIRC5,SOCS3,TMEM235"
TCGA.AA.3819	17	76210366	81048658	1096	0.0455	NEUTRAL	NA	94	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,BIRC5,C17orf62,C17orf70,C17orf89,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CEP295NL,CHMP6,CSNK1D,CYTH1,DCXR,DNAH17,DUS1L,EIF4A3,ENDOV,ENGASE,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LGALS3BP,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PGS1,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,SOCS3,STRA13,TBC1D16,TBCD,TEX19,TIMP2,TMEM105,TMEM235,TSPAN10,USP36,UTS2R,WDR45B,ZNF750"
TCGA.AA.A010.01A	17	76374695	76476749	42	0.2213	NEUTRAL	NA	2	"DNAH17,PGS1"
TCGA.AG.3906.01A	17	76388515	77711667	139	0.3189	NEUTRAL	NA	12	"C1QTNF1,CANT1,CEP295NL,CYTH1,DNAH17,ENGASE,ENPP7,LGALS3BP,PGS1,RBFOX3,TIMP2,USP36"
TCGA.AA.A00A.01A	17	76419937	76435124	7	-0.4397	NEUTRAL	NA	2	"DNAH17,PGS1"
TCGA.AA.A00A.01A	17	76437082	79867338	335	0.2751	NEUTRAL	NA	56	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,BAHCC1,BAIAP2,C17orf70,C17orf89,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CEP131,CEP295NL,CHMP6,CYTH1,DNAH17,EIF4A3,ENDOV,ENGASE,ENPP7,ENTHD2,FAM195B,FSCN2,GAA,GCGR,HGS,LGALS3BP,LOC100130370,MRPL12,NPB,NPLOC4,NPTX1,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,RBFOX3,RNF213,RPTOR,SGSH,SLC25A10,SLC26A11,SLC38A10,TBC1D16,TIMP2,TMEM105,TSPAN10,USP36"
TCGA.AA.3930.01A	17	76446717	78073368	177	0.1661	NEUTRAL	NA	16	"C1QTNF1,CANT1,CBX2,CBX4,CBX8,CCDC40,CEP295NL,CYTH1,DNAH17,ENGASE,ENPP7,LGALS3BP,RBFOX3,TBC1D16,TIMP2,USP36"
TCGA.AG.A008.01A	17	76457578	81051974	559	-0.0671	NEUTRAL	NA	90	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CEP295NL,CHMP6,CSNK1D,CYTH1,DCXR,DNAH17,DUS1L,EIF4A3,ENDOV,ENGASE,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LGALS3BP,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TIMP2,TMEM105,TSPAN10,USP36,UTS2R,WDR45B,ZNF750"
TCGA.AG.3909.01A	17	76535780	78111134	127	-0.3761	NEUTRAL	NA	18	"C1QTNF1,CANT1,CBX2,CBX4,CBX8,CCDC40,CEP295NL,CYTH1,DNAH17,EIF4A3,ENGASE,ENPP7,GAA,LGALS3BP,RBFOX3,TBC1D16,TIMP2,USP36"
TCGA.AF.A56L	17	76661268	77400622	231	0.0215	NEUTRAL	NA	9	"C1QTNF1,CANT1,CEP295NL,CYTH1,ENGASE,LGALS3BP,RBFOX3,TIMP2,USP36"
TCGA.AA.A010.01A	17	76732687	76778196	2	-0.1759	NEUTRAL	NA	1	CYTH1
TCGA.AG.A01W.01A	17	76788677	77260408	95	0.0176	NEUTRAL	NA	8	"C1QTNF1,CANT1,CEP295NL,ENGASE,LGALS3BP,RBFOX3,TIMP2,USP36"
TCGA.DT.5265	17	76793824	78641289	513	0.0255	NEUTRAL	NA	23	"C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC40,CEP295NL,EIF4A3,ENDOV,ENGASE,ENPP7,GAA,LGALS3BP,NPTX1,RBFOX3,RNF213,RPTOR,SGSH,SLC26A11,TBC1D16,TIMP2,USP36"
TCGA.AA.A010.01A	17	76794460	77751971	69	-0.4378	NEUTRAL	NA	9	"C1QTNF1,CANT1,CEP295NL,ENGASE,ENPP7,LGALS3BP,RBFOX3,TIMP2,USP36"
TCGA.AG.3611.01A	17	76866938	80202612	371	-0.4126	NEUTRAL	NA	70	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,BAHCC1,BAIAP2,C17orf70,C17orf89,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CEP131,CEP295NL,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENGASE,ENPP7,ENTHD2,FAM195B,FASN,FSCN2,GAA,GCGR,GPS1,HGS,LGALS3BP,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,NPTX1,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TIMP2,TMEM105,TSPAN10"
TCGA.AG.4009.01A	17	77079051	77711667	12	0.0154	NEUTRAL	NA	3	"ENGASE,ENPP7,RBFOX3"
TCGA.AA.3517	17	77081149	77484256	174	-0.0321	NEUTRAL	NA	2	"ENGASE,RBFOX3"
TCGA.DC.6682	17	77222589	77545108	134	0.0326	NEUTRAL	NA	1	RBFOX3
TCGA.A6.2686	17	77252526	81048658	782	0.2539	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.A6.6138	17	77252526	81048658	785	-0.007	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.3811	17	77252526	81048658	781	0.2939	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.3986	17	77252526	81048658	783	0.0886	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AG.3599	17	77252526	81048658	783	-0.0471	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AG.3893	17	77252526	81048658	773	0.009	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.3968	17	77256253	77361860	63	-0.0785	NEUTRAL	NA	1	RBFOX3
TCGA.AA.3527	17	77256253	81048658	783	-0.0108	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AG.A01W.01A	17	77385912	77406280	8	-0.3601	NEUTRAL	NA	1	RBFOX3
TCGA.DM.A1HB	17	77400622	81048658	673	0.0593	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AF.A56L	17	77411246	78483559	233	0.0795	NEUTRAL	NA	15	"CARD14,CBX2,CBX4,CBX8,CCDC40,EIF4A3,ENDOV,ENPP7,GAA,NPTX1,RBFOX3,RNF213,SGSH,SLC26A11,TBC1D16"
TCGA.AA.3968	17	77464410	81048658	675	0.3621	NEUTRAL	NA	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AG.A01W.01A	17	77468733	77575378	31	0.2286	NEUTRAL	NA	1	RBFOX3
TCGA.AG.A01W.01A	17	77678831	78645381	153	0.1974	NEUTRAL	NA	15	"CARD14,CBX2,CBX4,CBX8,CCDC40,EIF4A3,ENDOV,ENPP7,GAA,NPTX1,RNF213,RPTOR,SGSH,SLC26A11,TBC1D16"
TCGA.CA.6715	17	77781724	77851115	25	-0.117	NEUTRAL	NA	1	CBX4
TCGA.AA.A01Q.01A	17	77812745	78111134	35	0.1006	NEUTRAL	NA	5	"CBX4,CCDC40,EIF4A3,GAA,TBC1D16"
TCGA.AD.6965	17	77833915	77846932	7	0.1111	NEUTRAL	NA	0	None
TCGA.AA.3517	17	77849495	81048658	620	0.0078	NEUTRAL	NA	76	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.SS.A7HO	17	77886059	77891368	4	0.3757	NEUTRAL	NA	0	None
TCGA.SS.A7HO	17	77891501	79142518	333	-0.372	NEUTRAL	NA	14	"AATK,BAIAP2,CARD14,CCDC40,CHMP6,EIF4A3,ENDOV,GAA,NPTX1,RNF213,RPTOR,SGSH,SLC26A11,TBC1D16"
TCGA.AD.6965	17	77891501	81048658	598	0.1496	NEUTRAL	NA	76	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.A010.01A	17	77914616	77987114	11	0.1496	NEUTRAL	NA	1	TBC1D16
TCGA.AG.4009.01A	17	77921393	78069044	21	0.145	NEUTRAL	NA	2	"CCDC40,TBC1D16"
TCGA.AY.A8YK	17	78023721	78678242	185	-0.0892	NEUTRAL	NA	10	"CARD14,CCDC40,EIF4A3,ENDOV,GAA,NPTX1,RNF213,RPTOR,SGSH,SLC26A11"
TCGA.AA.3930.01A	17	78078355	78093014	15	-0.3504	NEUTRAL	NA	1	GAA
TCGA.AG.4009.01A	17	78091942	78120551	14	0.0465	NEUTRAL	NA	2	"EIF4A3,GAA"
TCGA.AA.3930.01A	17	78109206	78162127	15	0.3316	NEUTRAL	NA	2	"CARD14,EIF4A3"
TCGA.AA.A01Q.01A	17	78111899	78237433	52	-0.3688	NEUTRAL	NA	5	"CARD14,EIF4A3,RNF213,SGSH,SLC26A11"
TCGA.AG.3909.01A	17	78120551	78215506	28	-0.2271	NEUTRAL	NA	4	"CARD14,EIF4A3,SGSH,SLC26A11"
TCGA.AA.A00N.01A	17	78120551	78222916	42	-0.0309	NEUTRAL	NA	4	"CARD14,EIF4A3,SGSH,SLC26A11"
TCGA.AA.3930.01A	17	78166261	78333851	66	0.202	NEUTRAL	NA	4	"CARD14,RNF213,SGSH,SLC26A11"
TCGA.AG.4009.01A	17	78177999	78219894	16	-0.2498	NEUTRAL	NA	3	"CARD14,SGSH,SLC26A11"
TCGA.CM.6166	17	78223816	78573871	78	-0.0486	NEUTRAL	NA	5	"ENDOV,NPTX1,RNF213,RPTOR,SLC26A11"
TCGA.AA.A01Q.01A	17	78246988	78313907	16	0.3022	NEUTRAL	NA	1	RNF213
TCGA.AA.A01I.01A	17	78268508	81051974	300	-0.3858	NEUTRAL	NA	69	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,ENDOV,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.A010.01A	17	78269339	78292938	8	0.0442	NEUTRAL	NA	1	RNF213
TCGA.AG.3909.01A	17	78272089	78316896	9	0.0564	NEUTRAL	NA	1	RNF213
TCGA.AA.A00N.01A	17	78272089	78727761	72	-0.0553	NEUTRAL	NA	4	"ENDOV,NPTX1,RNF213,RPTOR"
TCGA.AG.3581	17	78283986	80367352	352	0.3015	NEUTRAL	NA	57	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,BAHCC1,BAIAP2,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,ENDOV,ENTHD2,FAM195B,FASN,FSCN2,GCGR,GPS1,HGS,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,RFNG,RNF213,RPTOR,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TEX19,TMEM105,TSPAN10,UTS2R"
TCGA.AG.3906.01A	17	78286762	78857534	69	-0.0021	NEUTRAL	NA	4	"ENDOV,NPTX1,RNF213,RPTOR"
TCGA.AA.A01Q.01A	17	78316896	79175993	124	-0.4916	NEUTRAL	NA	8	"AATK,BAIAP2,CEP131,CHMP6,ENDOV,NPTX1,RNF213,RPTOR"
TCGA.AG.3909.01A	17	78317605	78336860	17	-0.3713	NEUTRAL	NA	1	RNF213
TCGA.AA.3939.01A	17	78318437	81051974	507	-0.1215	NEUTRAL	NA	69	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,ENDOV,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.A01K.01A	17	78327300	81042842	234	-0.4114	NEUTRAL	NA	69	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,ENDOV,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.3930.01A	17	78335492	80918885	456	-0.0707	NEUTRAL	NA	68	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,ENDOV,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AG.3909.01A	17	78337380	78445483	32	0.1533	NEUTRAL	NA	3	"ENDOV,NPTX1,RNF213"
TCGA.A6.3808.01A	17	78351478	78936211	61	0.1692	NEUTRAL	NA	4	"ENDOV,NPTX1,RNF213,RPTOR"
TCGA.AA.A010.01A	17	78395620	78403506	7	0.1894	NEUTRAL	NA	1	ENDOV
TCGA.AG.3909.01A	17	78446950	78727761	7	-0.3906	NEUTRAL	NA	2	"NPTX1,RPTOR"
TCGA.AA.A010.01A	17	78519388	78965651	35	-0.0315	NEUTRAL	NA	2	"CHMP6,RPTOR"
TCGA.A6.6653	17	78644017	81048658	401	-0.0503	NEUTRAL	NA	66	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RPTOR,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AG.4009.01A	17	78854184	79031628	25	-0.3436	NEUTRAL	NA	3	"BAIAP2,CHMP6,RPTOR"
TCGA.AG.3909.01A	17	78897243	79060201	19	-0.4473	NEUTRAL	NA	3	"BAIAP2,CHMP6,RPTOR"
TCGA.AG.3906.01A	17	78897243	79671634	103	0.1803	NEUTRAL	NA	22	"AATK,ACTG1,ARL16,BAHCC1,BAIAP2,C17orf70,C17orf89,CCDC137,CEP131,CHMP6,ENTHD2,FSCN2,HGS,LOC100130370,MRPL12,NPLOC4,OXLD1,PDE6G,RPTOR,SLC38A10,TMEM105,TSPAN10"
TCGA.CM.6166	17	79010543	79074816	16	-0.1232	NEUTRAL	NA	1	BAIAP2
TCGA.AA.3979	17	79047112	80415913	136	0.064	NEUTRAL	NA	54	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CSNK1D,DCXR,DUS1L,ENTHD2,FAM195B,FASN,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TEX19,TMEM105,TSPAN10,UTS2R"
TCGA.AG.4009.01A	17	79058586	79573670	58	0.1705	NEUTRAL	NA	13	"AATK,ACTG1,BAHCC1,BAIAP2,C17orf70,C17orf89,CEP131,ENTHD2,FSCN2,LOC100130370,NPLOC4,SLC38A10,TMEM105"
TCGA.AG.3909.01A	17	79073677	79526245	55	-0.0221	NEUTRAL	NA	13	"AATK,ACTG1,BAHCC1,BAIAP2,C17orf70,C17orf89,CEP131,ENTHD2,FSCN2,LOC100130370,NPLOC4,SLC38A10,TMEM105"
TCGA.AA.A010.01A	17	79139668	79668537	137	-0.5138	NEUTRAL	NA	18	"AATK,ACTG1,ARL16,BAHCC1,C17orf70,C17orf89,CCDC137,CEP131,ENTHD2,FSCN2,HGS,LOC100130370,NPLOC4,OXLD1,PDE6G,SLC38A10,TMEM105,TSPAN10"
TCGA.SS.A7HO	17	79150653	81048658	266	0.009	NEUTRAL	NA	62	"ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CSNK1D,DCXR,DUS1L,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.A01Q.01A	17	79177276	79651028	45	0.1733	NEUTRAL	NA	17	"ACTG1,ARL16,BAHCC1,C17orf70,C17orf89,CCDC137,CEP131,ENTHD2,FSCN2,HGS,LOC100130370,NPLOC4,OXLD1,PDE6G,SLC38A10,TMEM105,TSPAN10"
TCGA.AA.3861.01A	17	79193643	79673886	72	-0.0591	NEUTRAL	NA	18	"ACTG1,ARL16,BAHCC1,C17orf70,C17orf89,CCDC137,CEP131,ENTHD2,FSCN2,HGS,LOC100130370,MRPL12,NPLOC4,OXLD1,PDE6G,SLC38A10,TMEM105,TSPAN10"
TCGA.AA.A00Q.01A	17	79204295	81050855	224	0.351	NEUTRAL	NA	61	"ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CSNK1D,DCXR,DUS1L,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AD.6890	17	79261808	80740140	169	0.2951	NEUTRAL	NA	56	"ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,BAHCC1,C17orf62,C17orf70,CCDC137,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B"
TCGA.CM.6172	17	79261808	81048658	249	-0.1165	NEUTRAL	NA	59	"ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,C17orf62,C17orf70,CCDC137,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.A00L.01A	17	79287459	80196541	118	0.3545	NEUTRAL	NA	40	"ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,BAHCC1,C17orf70,CCDC137,CCDC57,DCXR,DUS1L,FAM195B,FASN,FSCN2,GCGR,GPS1,HGS,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,RFNG,SIRT7,SLC16A3,SLC25A10,STRA13,TMEM105,TSPAN10"
TCGA.AG.3901	17	79446591	81048658	235	-0.0628	NEUTRAL	NA	55	"ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,C17orf62,C17orf70,CCDC137,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,STRA13,TBCD,TEX19,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.CM.6169	17	79446591	81048658	234	-0.032	NEUTRAL	NA	55	"ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,C17orf62,C17orf70,CCDC137,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,STRA13,TBCD,TEX19,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.A6.3808.01A	17	79518922	79633526	25	0.0086	NEUTRAL	NA	5	"C17orf70,NPLOC4,OXLD1,PDE6G,TSPAN10"
TCGA.AG.3909.01A	17	79534396	79686800	47	-0.4876	NEUTRAL	NA	9	"ARL16,CCDC137,HGS,MRPL12,NPLOC4,OXLD1,PDE6G,SLC25A10,TSPAN10"
TCGA.AM.5821	17	79538840	79602819	9	-0.1229	NEUTRAL	NA	1	NPLOC4
TCGA.DT.5265	17	79538840	81048658	225	-0.3447	NEUTRAL	NA	52	"ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,C17orf62,CCDC137,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FAM195B,FASN,FN3K,FN3KRP,FOXK2,GCGR,GPS1,HEXDC,HGS,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,STRA13,TBCD,TEX19,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AG.4009.01A	17	79575710	79805082	39	-0.3194	NEUTRAL	NA	13	"ARL16,CCDC137,FAM195B,GCGR,HGS,MRPL12,NPLOC4,OXLD1,P4HB,PDE6G,PPP1R27,SLC25A10,TSPAN10"
TCGA.AM.5821	17	79614153	79993063	21	0.2825	NEUTRAL	NA	26	"ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,CCDC137,FAM195B,GCGR,HGS,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,SIRT7,SLC25A10,STRA13,TSPAN10"
TCGA.AG.3909.01A	17	79792361	80085557	56	0.1834	NEUTRAL	NA	22	"ALYREF,ANAPC11,ARHGDIA,ASPSCR1,CCDC57,DCXR,DUS1L,FASN,GPS1,LRRC45,MAFG,MYADML2,NOTUM,NPB,P4HB,PCYT2,PPP1R27,PYCR1,RAC3,RFNG,SIRT7,STRA13"
TCGA.AG.3891.01A	17	79852302	80900246	169	0.0878	NEUTRAL	NA	35	"ANAPC11,ASPSCR1,C17orf62,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FASN,FN3K,FN3KRP,FOXK2,GPS1,HEXDC,LRRC45,MAFG,MYADML2,NARF,NOTUM,NPB,OGFOD3,PCYT2,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,STRA13,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A02K.01A	17	79857758	80059513	101	-0.3972	NEUTRAL	NA	18	"ANAPC11,ASPSCR1,CCDC57,DCXR,DUS1L,FASN,GPS1,LRRC45,MAFG,MYADML2,NOTUM,NPB,PCYT2,PYCR1,RAC3,RFNG,SIRT7,STRA13"
TCGA.AA.A00A.01A	17	79870245	80196541	33	-0.0103	NEUTRAL	NA	16	"ASPSCR1,CCDC57,DCXR,DUS1L,FASN,GPS1,LRRC45,MAFG,MYADML2,NOTUM,PYCR1,RAC3,RFNG,SIRT7,SLC16A3,STRA13"
TCGA.AA.A01Q.01A	17	79873276	80196541	99	-0.0313	NEUTRAL	NA	16	"ASPSCR1,CCDC57,DCXR,DUS1L,FASN,GPS1,LRRC45,MAFG,MYADML2,NOTUM,PYCR1,RAC3,RFNG,SIRT7,SLC16A3,STRA13"
TCGA.AF.A56L	17	79943474	81048658	198	-0.1679	NEUTRAL	NA	29	"ASPSCR1,B3GNTL1,C17orf62,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FASN,FN3K,FN3KRP,FOXK2,GPS1,HEXDC,LRRC45,METRNL,NARF,OGFOD3,RAB40B,RAC3,RFNG,SECTM1,SLC16A3,STRA13,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AG.4009.01A	17	79952659	79970032	5	0.1637	NEUTRAL	NA	1	ASPSCR1
TCGA.AG.4009.01A	17	80022647	80402286	61	-0.2257	NEUTRAL	NA	12	"C17orf62,CCDC57,CD7,CSNK1D,DUS1L,FASN,HEXDC,OGFOD3,SECTM1,SLC16A3,TEX19,UTS2R"
TCGA.AY.A8YK	17	80058235	80114528	17	0.115	NEUTRAL	NA	1	CCDC57
TCGA.AM.5821	17	80059331	81048658	186	0.2475	NEUTRAL	NA	20	"B3GNTL1,C17orf62,CCDC57,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,SECTM1,SLC16A3,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.A6.3808.01A	17	80059520	81051974	170	-0.4546	NEUTRAL	NA	20	"B3GNTL1,C17orf62,CCDC57,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,SECTM1,SLC16A3,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A02K.01A	17	80085542	81051961	158	0.0266	NEUTRAL	NA	20	"B3GNTL1,C17orf62,CCDC57,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,SECTM1,SLC16A3,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A010.01A	17	80085557	80146058	13	0.1545	NEUTRAL	NA	1	CCDC57
TCGA.A6.2675	17	80119644	81048658	170	-0.1742	NEUTRAL	NA	20	"B3GNTL1,C17orf62,CCDC57,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,SECTM1,SLC16A3,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AG.3909.01A	17	80121028	80203802	17	-0.3516	NEUTRAL	NA	3	"CCDC57,CSNK1D,SLC16A3"
TCGA.AF.3914.01A	17	80193854	81051974	135	-0.3244	NEUTRAL	NA	19	"B3GNTL1,C17orf62,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,SECTM1,SLC16A3,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A010.01A	17	80231123	80284983	9	0.0388	NEUTRAL	NA	3	"CD7,CSNK1D,SECTM1"
TCGA.AG.3611.01A	17	80231123	80588749	49	-0.4246	NEUTRAL	NA	11	"C17orf62,CD7,CSNK1D,FOXK2,HEXDC,NARF,OGFOD3,SECTM1,TEX19,UTS2R,WDR45B"
TCGA.A6.5667	17	80379331	80571504	38	-0.3581	NEUTRAL	NA	4	"C17orf62,FOXK2,HEXDC,NARF"
TCGA.AA.A010.01A	17	80393524	80674605	49	-0.2275	NEUTRAL	NA	7	"C17orf62,FN3KRP,FOXK2,HEXDC,NARF,RAB40B,WDR45B"
TCGA.AG.4009.01A	17	80404436	80684669	37	0.1876	NEUTRAL	NA	6	"C17orf62,FN3KRP,FOXK2,NARF,RAB40B,WDR45B"
TCGA.AA.3979	17	80571128	81048658	113	0.0434	NEUTRAL	NA	8	"B3GNTL1,FN3K,FN3KRP,METRNL,RAB40B,TBCD,WDR45B,ZNF750"
TCGA.A6.5667	17	80571694	81048658	111	0.1071	NEUTRAL	NA	8	"B3GNTL1,FN3K,FN3KRP,METRNL,RAB40B,TBCD,WDR45B,ZNF750"
TCGA.AG.3611.01A	17	80615687	81050855	28	0.2872	NEUTRAL	NA	7	"B3GNTL1,FN3K,FN3KRP,METRNL,RAB40B,TBCD,ZNF750"
TCGA.AG.4009.01A	17	80713977	80858479	19	0.2675	NEUTRAL	NA	2	"TBCD,ZNF750"
TCGA.AA.A010.01A	17	80755554	80900246	34	-0.4654	NEUTRAL	NA	2	"TBCD,ZNF750"
TCGA.AD.6890	17	80765321	81048658	77	0.2212	NEUTRAL	NA	4	"B3GNTL1,METRNL,TBCD,ZNF750"
TCGA.AG.4009.01A	17	80861221	81051974	21	-0.2215	NEUTRAL	NA	3	"B3GNTL1,METRNL,TBCD"
TCGA.AA.3967.01A	17	80863771	81051974	28	-0.2233	NEUTRAL	NA	3	"B3GNTL1,METRNL,TBCD"
TCGA.AA.A01Z	17	80866426	81048658	52	0.0172	NEUTRAL	NA	3	"B3GNTL1,METRNL,TBCD"
TCGA.AA.A01Q.01A	17	80881482	80897195	7	0.1942	NEUTRAL	NA	1	TBCD
TCGA.AG.3891.01A	17	80904718	81051974	9	-0.1043	NEUTRAL	NA	2	"B3GNTL1,METRNL"
TCGA.AA.3930.01A	17	80923478	81050855	7	-0.4841	NEUTRAL	NA	2	"B3GNTL1,METRNL"
TCGA.CK.4948.01B	17	80972276	81051974	6	-0.1029	NEUTRAL	NA	2	"B3GNTL1,METRNL"
TCGA.AA.3980.01A	17	80992847	81051974	5	-0.387	NEUTRAL	NA	2	"B3GNTL1,METRNL"
TCGA.DM.A0XD	17	81006628	81048658	4	-0.4351	NEUTRAL	NA	2	"B3GNTL1,METRNL"
TCGA.AA.A00L.01A	17	81042842	81050855	2	-0.1154	NEUTRAL	NA	1	METRNL
TCGA.AA.A01Q.01A	17	81042842	81051974	3	0.1715	NEUTRAL	NA	1	METRNL
TCGA.CM.4746	18	100948	295045	30	0.3463	NEUTRAL	NA	2	"THOC1,USP14"
TCGA.AG.3894	18	100948	852757	296	0.029	NEUTRAL	NA	9	"CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AH.6903	18	100948	855263	298	0.0101	NEUTRAL	NA	9	"CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AD.6901	18	100948	1008892	376	-0.3026	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.3850	18	100948	1014559	379	0.27085	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.3811	18	100948	1018355	386	0.302	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.DM.A28F	18	100948	1146963	426	0.0033	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.CL.4957	18	100948	1264213	451	-0.3943	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.3561	18	100948	1444935	490	0.0182	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.D5.6922	18	100948	1718331	609	0.2531	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AD.6548	18	100948	1876894	675	0.0128	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.3842	18	100948	2259060	854	0.0238	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.F4.6461	18	100948	2441213	920	-0.4594	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.A6.2678	18	100948	2485782	943	-0.1429	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.DY.A1DF	18	100948	2516419	959	0.3497	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.A6.A567	18	100948	2745430	1037	0.0435	NEUTRAL	NA	13	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,METTL4,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.CM.5868	18	100948	3152449	1188	-0.3583	NEUTRAL	NA	16	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,LPIN2,METTL4,MYOM1,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.G4.6310	18	100948	3326090	1264	-0.3435	NEUTRAL	NA	18	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.CM.4748	18	100948	3449309	1309	-0.0202	NEUTRAL	NA	19	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.CA.5256	18	100948	3466303	1308	-0.3855	NEUTRAL	NA	19	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.A01S	18	100948	3607745	1359	0.03955	NEUTRAL	NA	20	"ADCYAP1,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.CA.5254	18	100948	3859299	1440	0.0094	NEUTRAL	NA	20	"ADCYAP1,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.3666	18	100948	5003198	1934	-0.366	NEUTRAL	NA	20	"ADCYAP1,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.A6.6138	18	100948	5050454	1948	0.0105	NEUTRAL	NA	20	"ADCYAP1,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.D5.6931	18	100948	5261245	2045	0.0213	NEUTRAL	NA	21	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.G4.6314	18	100948	5292029	2053	0.0018	NEUTRAL	NA	22	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.DM.A1HB	18	100948	6091538	2369	-0.0032	NEUTRAL	NA	25	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AG.3575	18	100948	6274412	2453	0.0254	NEUTRAL	NA	25	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.NH.A6GB	18	100948	6579215	2576	0.0052	NEUTRAL	NA	25	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AA.3941	18	100948	6875669	2696	-0.4349	NEUTRAL	NA	26	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AU.3779	18	100948	7121226	2854	-0.2864	NEUTRAL	NA	27	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AA.3858	18	100948	7269295	2913	-0.1124	NEUTRAL	NA	28	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.G4.6322	18	100948	7359684	2933	-0.0122	NEUTRAL	NA	28	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.DT.5265	18	100948	8254001	3278	-0.0092	NEUTRAL	NA	29	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MYL12A,MYL12B,MYOM1,NDC80,PTPRM,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.A6.6142	18	100948	9775565	3964	-0.4655	NEUTRAL	NA	37	"ADCYAP1,ANKRD12,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NDC80,NDUFV2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AA.3655	18	100948	9972694	4076	-0.0041	NEUTRAL	NA	39	"ADCYAP1,ANKRD12,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NDC80,NDUFV2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AA.3488	18	100948	11032974	4616	-0.4892	NEUTRAL	NA	42	"ADCYAP1,ANKRD12,APCDD1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.D5.6929	18	100948	12046965	5013	-0.3994	NEUTRAL	NA	47	"ADCYAP1,ANKRD12,APCDD1,ARHGAP28,C18orf42,CETN1,CHMP1B,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.EI.7004	18	100948	12160889	5028	-0.0306	NEUTRAL	NA	48	"ADCYAP1,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CETN1,CHMP1B,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.G4.6626	18	100948	12163128	5036	-0.404	NEUTRAL	NA	48	"ADCYAP1,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CETN1,CHMP1B,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.A6.5664	18	100948	12750252	5120	-0.3413	NEUTRAL	NA	55	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AA.A01Z	18	100948	13240189	5244	0.0411	NEUTRAL	NA	59	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AG.3885	18	100948	13562148	5420	0.0347	NEUTRAL	NA	59	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AA.3495	18	100948	14434520	5649	-0.4841	NEUTRAL	NA	64	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AG.3727	18	100948	14462809	5664	0.006	NEUTRAL	NA	64	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.D5.6926	18	100948	14940732	5699	-0.2147	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.F4.6463	18	100948	15079293	5720	-0.0145	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.DM.A1D7	18	100948	15081796	5719	-0.0896	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AF.2693	18	100948	15182453	5727	-0.0378	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AM.5820	18	100948	15182453	5718	-0.0318	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.G4.6299	18	100948	15182453	5724	0.252	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.G5.6641	18	100948	15182453	5714	0.2466	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.NH.A6GC	18	100948	15182453	5722	-0.418	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AZ.5407	18	100948	15215870	5734	-0.0746	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.D5.5540	18	100948	15215870	5731	-0.2821	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.G5.6572	18	100948	15215870	5722	0.0082	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.3549	18	100948	19495667	5818	0.0018	NEUTRAL	NA	72	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.A6.6649	18	100948	19526430	5820	0.1689	NEUTRAL	NA	72	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.F4.6459	18	100948	19578354	5835	-0.0421	NEUTRAL	NA	72	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.3664	18	100948	19679140	5875	-0.029	NEUTRAL	NA	72	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AH.6544	18	100948	19925720	5928	-0.2781	NEUTRAL	NA	73	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.3872	18	100948	19940144	5936	-0.1069	NEUTRAL	NA	73	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.DC.6158	18	100948	20160141	6007	-0.2906	NEUTRAL	NA	74	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.D5.6927	18	100948	20599125	6113	0.0063	NEUTRAL	NA	75	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.A6.5661	18	100948	20858138	6163	-0.173	NEUTRAL	NA	76	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CABLES1,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.DY.A1DG	18	100948	21071924	6233	-0.3707	NEUTRAL	NA	78	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CABLES1,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.3524	18	100948	21124800	6245	0.0414	NEUTRAL	NA	80	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AF.2690	18	100948	21127909	6252	-0.2885	NEUTRAL	NA	80	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.CM.5862	18	100948	21632995	6373	-0.1436	NEUTRAL	NA	83	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.3681	18	100948	21779409	6436	0.3665	NEUTRAL	NA	85	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AG.3890	18	100948	22044399	6510	-0.3237	NEUTRAL	NA	87	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.G4.6311	18	100948	23390867	7076	-0.0428	NEUTRAL	NA	88	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AG.3594	18	100948	23501877	7130	0.004	NEUTRAL	NA	88	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AF.3911	18	100948	23739313	7195	-0.499	NEUTRAL	NA	90	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AY.4070	18	100948	24834746	7528	0.1568	NEUTRAL	NA	94	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AA.3952	18	100948	25067054	7625	0.0124	NEUTRAL	NA	94	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.D5.6898	18	100948	25151788	7632	-0.1621	NEUTRAL	NA	94	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.D5.5539	18	100948	25178579	7659	-0.0299	NEUTRAL	NA	94	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.DM.A288	18	100948	25928663	7883	0.0742	NEUTRAL	NA	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AA.3833	18	100948	26195766	7968	-0.011	NEUTRAL	NA	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.A6.2686	18	100948	26249104	7974	0.0482	NEUTRAL	NA	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AA.3851	18	100948	26257521	7984	-0.1623	NEUTRAL	NA	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.D5.6541	18	100948	26551080	8066	-0.0022	NEUTRAL	NA	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AG.3881	18	100948	27244158	8272	0.0156	NEUTRAL	NA	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.A6.6648	18	100948	27617682	8358	-0.3031	NEUTRAL	NA	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.G4.6306	18	100948	28142481	8535	-0.0025	NEUTRAL	NA	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AA.3864	18	100948	28917780	8773	0.0133	NEUTRAL	NA	99	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,DSC1,DSC2,DSC3,DSG1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.A6.6653	18	100948	30301144	9279	0.1256	NEUTRAL	NA	111	Too-Many
TCGA.G4.6302	18	100948	30402634	9323	-0.0019	NEUTRAL	NA	111	Too-Many
TCGA.AY.4071	18	100948	31142263	9433	-0.3859	NEUTRAL	NA	112	Too-Many
TCGA.AA.3662	18	100948	32375776	9769	-0.4961	NEUTRAL	NA	115	Too-Many
TCGA.AG.3725	18	100948	32990318	9929	-0.409	NEUTRAL	NA	120	Too-Many
TCGA.DM.A0XD	18	100948	33636065	10074	-0.1054	NEUTRAL	NA	124	Too-Many
TCGA.DM.A1HA	18	100948	34346307	10409	-0.0296	NEUTRAL	NA	128	Too-Many
TCGA.AA.3977	18	100948	35331183	10659	0.0256	NEUTRAL	NA	131	Too-Many
TCGA.5M.AATA	18	100948	35835744	10835	-0.0037	NEUTRAL	NA	131	Too-Many
TCGA.AA.3518	18	100948	40658340	12317	-0.01	NEUTRAL	NA	133	Too-Many
TCGA.CM.5348	18	100948	40831636	12389	-0.018	NEUTRAL	NA	133	Too-Many
TCGA.AF.2689	18	100948	42372486	12806	-0.4075	NEUTRAL	NA	135	Too-Many
TCGA.NH.A6GA	18	100948	42741409	12965	0.3156	NEUTRAL	NA	135	Too-Many
TCGA.G4.6628	18	100948	45907943	14093	-0.0051	NEUTRAL	NA	157	Too-Many
TCGA.A6.2681	18	100948	46871465	14426	-0.484	NEUTRAL	NA	160	Too-Many
TCGA.AZ.6607	18	100948	47345928	14543	0.2215	NEUTRAL	NA	165	Too-Many
TCGA.D5.6531	18	100948	47936222	14873	0.2143	NEUTRAL	NA	170	Too-Many
TCGA.F4.6855	18	100948	48097009	14895	-0.3997	NEUTRAL	NA	171	Too-Many
TCGA.AZ.6606	18	100948	48462209	15049	-0.0046	NEUTRAL	NA	173	Too-Many
TCGA.A6.2674	18	100948	48464203	15093	-0.2005	NEUTRAL	NA	173	Too-Many
TCGA.A6.6650	18	100948	48495480	13857	-0.5017	NEUTRAL	NA	174	Too-Many
TCGA.D5.6535	18	100948	51477681	16191	-0.0183	NEUTRAL	NA	177	Too-Many
TCGA.EI.6512	18	100948	52378622	16383	-0.4198	NEUTRAL	NA	182	Too-Many
TCGA.AF.2691	18	100948	55440758	17391	-0.1419	NEUTRAL	NA	194	Too-Many
TCGA.AA.3713	18	100948	55931178	17612	-0.0031	NEUTRAL	NA	195	Too-Many
TCGA.AU.6004	18	100948	57628925	18210	-0.0039	NEUTRAL	NA	206	Too-Many
TCGA.AZ.6599	18	100948	58106701	18504	0.0069	NEUTRAL	NA	207	Too-Many
TCGA.DM.A28C	18	100948	58630310	18610	0.0089	NEUTRAL	NA	207	Too-Many
TCGA.F4.6704	18	100948	59997638	19125	-0.4889	NEUTRAL	NA	212	Too-Many
TCGA.AA.3527	18	100948	60027240	19162	0.0046	NEUTRAL	NA	212	Too-Many
TCGA.AA.3949	18	100948	61380356	19595	-0.0006	NEUTRAL	NA	223	Too-Many
TCGA.CI.6621	18	100948	63669075	20342	-0.3204	NEUTRAL	NA	229	Too-Many
TCGA.AY.6196	18	100948	63907595	20252	0.3389	NEUTRAL	NA	229	Too-Many
TCGA.AG.3731	18	100948	65906060	21160	-0.2084	NEUTRAL	NA	231	Too-Many
TCGA.AG.4015	18	100948	67208391	21569	-0.4847	NEUTRAL	NA	234	Too-Many
TCGA.G5.6233	18	100948	68268211	22020	-0.183	NEUTRAL	NA	237	Too-Many
TCGA.A6.5665	18	100948	71386590	23243	-0.0313	NEUTRAL	NA	240	Too-Many
TCGA.AZ.6600	18	100948	71425621	23329	-0.2778	NEUTRAL	NA	240	Too-Many
TCGA.F5.6814	18	100948	72871755	23895	-0.009	NEUTRAL	NA	248	Too-Many
TCGA.AA.3869	18	100948	76660692	25685	-0.4632	NEUTRAL	NA	256	Too-Many
TCGA.CK.6746	18	100948	76660692	25628	-0.0051	NEUTRAL	NA	256	Too-Many
TCGA.AG.A026	18	100948	76716876	25697	-0.5142	NEUTRAL	NA	256	Too-Many
TCGA.3L.AA1B	18	100948	78015056	26003	-0.33	NEUTRAL	NA	267	Too-Many
TCGA.5M.AAT6	18	100948	78015056	26014	-0.0127	NEUTRAL	NA	267	Too-Many
TCGA.A6.2672	18	100948	78015056	25925	-0.0664	NEUTRAL	NA	267	Too-Many
TCGA.A6.2679	18	100948	78015056	25989	-0.3415	NEUTRAL	NA	267	Too-Many
TCGA.A6.2680	18	100948	78015056	25970	-0.3822	NEUTRAL	NA	267	Too-Many
TCGA.A6.2682	18	100948	78015056	25552	-0.4799	NEUTRAL	NA	267	Too-Many
TCGA.A6.2685	18	100948	78015056	25960	-0.3247	NEUTRAL	NA	267	Too-Many
TCGA.A6.3807	18	100948	78015056	25878	-0.3958	NEUTRAL	NA	267	Too-Many
TCGA.A6.3809	18	100948	78015056	23835	-0.0169	NEUTRAL	NA	267	Too-Many
TCGA.A6.4105	18	100948	78015056	26026	-0.3382	NEUTRAL	NA	267	Too-Many
TCGA.A6.4107	18	100948	78015056	25998	-0.4908	NEUTRAL	NA	267	Too-Many
TCGA.A6.5657	18	100948	78015056	25960	-0.1594	NEUTRAL	NA	267	Too-Many
TCGA.A6.5667	18	100948	78015056	26019	-0.4999	NEUTRAL	NA	267	Too-Many
TCGA.A6.6137	18	100948	78015056	26026	-0.3616	NEUTRAL	NA	267	Too-Many
TCGA.A6.6141	18	100948	78015056	26007	0.0063	NEUTRAL	NA	267	Too-Many
TCGA.A6.6651	18	100948	78015056	25902	-0.1601	NEUTRAL	NA	267	Too-Many
TCGA.A6.6654	18	100948	78015056	25957	-0.0927	NEUTRAL	NA	267	Too-Many
TCGA.A6.6780	18	100948	78015056	25955	-0.0083	NEUTRAL	NA	267	Too-Many
TCGA.A6.6781	18	100948	78015056	23801	-0.0106	NEUTRAL	NA	267	Too-Many
TCGA.A6.A565	18	100948	78015056	25856	-0.0043	NEUTRAL	NA	267	Too-Many
TCGA.A6.A566	18	100948	78015056	25808	0	NEUTRAL	NA	267	Too-Many
TCGA.A6.A56B	18	100948	78015056	25873	-0.4625	NEUTRAL	NA	267	Too-Many
TCGA.AA.3489	18	100948	78015056	25935	-0.2375	NEUTRAL	NA	267	Too-Many
TCGA.AA.3492	18	100948	78015056	25999	-0.0024	NEUTRAL	NA	267	Too-Many
TCGA.AA.3494	18	100948	78015056	26005	-0.4556	NEUTRAL	NA	267	Too-Many
TCGA.AA.3502	18	100948	78015056	25995	0.0044	NEUTRAL	NA	267	Too-Many
TCGA.AA.3510	18	100948	78015056	25997	-0.0039	NEUTRAL	NA	267	Too-Many
TCGA.AA.3514	18	100948	78015056	26014	-0.0178	NEUTRAL	NA	267	Too-Many
TCGA.AA.3516	18	100948	78015056	25981	-0.0107	NEUTRAL	NA	267	Too-Many
TCGA.AA.3522	18	100948	78015056	26010	-0.3436	NEUTRAL	NA	267	Too-Many
TCGA.AA.3529	18	100948	78015056	26019	-0.0072	NEUTRAL	NA	267	Too-Many
TCGA.AA.3532	18	100948	78015056	26018	-0.2716	NEUTRAL	NA	267	Too-Many
TCGA.AA.3534	18	100948	78015056	26015	-0.0076	NEUTRAL	NA	267	Too-Many
TCGA.AA.3543	18	100948	78015056	25999	-0.0235	NEUTRAL	NA	267	Too-Many
TCGA.AA.3555	18	100948	78015056	26036	-0.0184	NEUTRAL	NA	267	Too-Many
TCGA.AA.3556	18	100948	78015056	25975	-0.2661	NEUTRAL	NA	267	Too-Many
TCGA.AA.3558	18	100948	78015056	26027	-0.0381	NEUTRAL	NA	267	Too-Many
TCGA.AA.3663	18	100948	78015056	25961	-0.0103	NEUTRAL	NA	267	Too-Many
TCGA.AA.3675	18	100948	78015056	26034	-0.0082	NEUTRAL	NA	267	Too-Many
TCGA.AA.3678	18	100948	78015056	26036	-0.5037	NEUTRAL	NA	267	Too-Many
TCGA.AA.3680	18	100948	78015056	26042	0.0026	NEUTRAL	NA	267	Too-Many
TCGA.AA.3684	18	100948	78015056	26028	-0.0211	NEUTRAL	NA	267	Too-Many
TCGA.AA.3685	18	100948	78015056	26042	-0.1965	NEUTRAL	NA	267	Too-Many
TCGA.AA.3695	18	100948	78015056	26040	-0.4126	NEUTRAL	NA	267	Too-Many
TCGA.AA.3696	18	100948	78015056	26040	-0.0138	NEUTRAL	NA	267	Too-Many
TCGA.AA.3697	18	100948	78015056	26017	-0.5092	NEUTRAL	NA	267	Too-Many
TCGA.AA.3710	18	100948	78015056	26015	-0.0259	NEUTRAL	NA	267	Too-Many
TCGA.AA.3712	18	100948	78015056	26025	-0.4011	NEUTRAL	NA	267	Too-Many
TCGA.AA.3715	18	100948	78015056	26040	0.0327	NEUTRAL	NA	267	Too-Many
TCGA.AA.3812	18	100948	78015056	26042	-0.0105	NEUTRAL	NA	267	Too-Many
TCGA.AA.3814	18	100948	78015056	26040	-0.0275	NEUTRAL	NA	267	Too-Many
TCGA.AA.3818	18	100948	78015056	26035	-0.0154	NEUTRAL	NA	267	Too-Many
TCGA.AA.3821	18	100948	78015056	25992	-0.038	NEUTRAL	NA	267	Too-Many
TCGA.AA.3831	18	100948	78015056	25998	-0.0099	NEUTRAL	NA	267	Too-Many
TCGA.AA.3837	18	100948	78015056	26040	-0.3051	NEUTRAL	NA	267	Too-Many
TCGA.AA.3845	18	100948	78015056	25993	-0.0145	NEUTRAL	NA	267	Too-Many
TCGA.AA.3846	18	100948	78015056	26001	-0.4236	NEUTRAL	NA	267	Too-Many
TCGA.AA.3852	18	100948	78015056	26040	-0.0062	NEUTRAL	NA	267	Too-Many
TCGA.AA.3854	18	100948	78015056	26043	-0.0069	NEUTRAL	NA	267	Too-Many
TCGA.AA.3855	18	100948	78015056	25990	-0.0085	NEUTRAL	NA	267	Too-Many
TCGA.AA.3856	18	100948	78015056	26041	-0.3642	NEUTRAL	NA	267	Too-Many
TCGA.AA.3875	18	100948	78015056	26042	-0.438	NEUTRAL	NA	267	Too-Many
TCGA.AA.3877	18	100948	78015056	26016	-0.0216	NEUTRAL	NA	267	Too-Many
TCGA.AA.3947	18	100948	78015056	25995	-0.0229	NEUTRAL	NA	267	Too-Many
TCGA.AA.3950	18	100948	78015056	26014	-0.0151	NEUTRAL	NA	267	Too-Many
TCGA.AA.3966	18	100948	78015056	25990	0.0315	NEUTRAL	NA	267	Too-Many
TCGA.AA.3968	18	100948	78015056	26008	-0.4839	NEUTRAL	NA	267	Too-Many
TCGA.AA.3976	18	100948	78015056	26011	-0.5077	NEUTRAL	NA	267	Too-Many
TCGA.AA.3984	18	100948	78015056	25996	-0.0364	NEUTRAL	NA	267	Too-Many
TCGA.AA.3986	18	100948	78015056	26012	-0.0121	NEUTRAL	NA	267	Too-Many
TCGA.AA.3994	18	100948	78015056	25987	-0.0216	NEUTRAL	NA	267	Too-Many
TCGA.AA.A01P	18	100948	78015056	25985	-0.0043	NEUTRAL	NA	267	Too-Many
TCGA.AA.A01R	18	100948	78015056	26006	-0.0074	NEUTRAL	NA	267	Too-Many
TCGA.AA.A01V	18	100948	78015056	25988	-0.0027	NEUTRAL	NA	267	Too-Many
TCGA.AA.A01X	18	100948	78015056	25969	-0.3867	NEUTRAL	NA	267	Too-Many
TCGA.AA.A02Y	18	100948	78015056	25987	-0.003	NEUTRAL	NA	267	Too-Many
TCGA.AA.A03F	18	100948	78015056	26000	-0.0037	NEUTRAL	NA	267	Too-Many
TCGA.AA.A03J	18	100948	78015056	25483	-0.3057	NEUTRAL	NA	267	Too-Many
TCGA.AD.5900	18	100948	78015056	25972	0.1275	NEUTRAL	NA	267	Too-Many
TCGA.AD.6888	18	100948	78015056	25986	-0.3503	NEUTRAL	NA	267	Too-Many
TCGA.AD.6889	18	100948	78015056	25980	-0.0035	NEUTRAL	NA	267	Too-Many
TCGA.AD.6890	18	100948	78015056	25987	-0.3582	NEUTRAL	NA	267	Too-Many
TCGA.AD.6895	18	100948	78015056	25978	-0.0088	NEUTRAL	NA	267	Too-Many
TCGA.AD.6963	18	100948	78015056	25985	-0.2545	NEUTRAL	NA	267	Too-Many
TCGA.AD.6964	18	100948	78015056	25987	0	NEUTRAL	NA	267	Too-Many
TCGA.AD.A5EJ	18	100948	78015056	25880	-0.0014	NEUTRAL	NA	267	Too-Many
TCGA.AF.2687	18	100948	78015056	25956	-0.2394	NEUTRAL	NA	267	Too-Many
TCGA.AF.2692	18	100948	78015056	26029	-0.4312	NEUTRAL	NA	267	Too-Many
TCGA.AF.4110	18	100948	78015056	26027	-0.4977	NEUTRAL	NA	267	Too-Many
TCGA.AF.5654	18	100948	78015056	25953	-0.0084	NEUTRAL	NA	267	Too-Many
TCGA.AF.A56K	18	100948	78015056	25947	-0.4005	NEUTRAL	NA	267	Too-Many
TCGA.AG.3580	18	100948	78015056	26030	-0.0114	NEUTRAL	NA	267	Too-Many
TCGA.AG.3599	18	100948	78015056	26007	-0.0114	NEUTRAL	NA	267	Too-Many
TCGA.AG.3878	18	100948	78015056	26043	-0.0113	NEUTRAL	NA	267	Too-Many
TCGA.AG.3882	18	100948	78015056	26036	-0.4375	NEUTRAL	NA	267	Too-Many
TCGA.AG.3883	18	100948	78015056	26040	-0.3212	NEUTRAL	NA	267	Too-Many
TCGA.AG.3892	18	100948	78015056	25931	-0.006	NEUTRAL	NA	267	Too-Many
TCGA.AG.3901	18	100948	78015056	25945	-0.3318	NEUTRAL	NA	267	Too-Many
TCGA.AG.3902	18	100948	78015056	25940	-0.2599	NEUTRAL	NA	267	Too-Many
TCGA.AG.4008	18	100948	78015056	25841	-0.4908	NEUTRAL	NA	267	Too-Many
TCGA.AG.A02N	18	100948	78015056	26005	0.003	NEUTRAL	NA	267	Too-Many
TCGA.AH.6547	18	100948	78015056	25983	-0.0581	NEUTRAL	NA	267	Too-Many
TCGA.AH.6643	18	100948	78015056	25970	-0.3767	NEUTRAL	NA	267	Too-Many
TCGA.AH.6644	18	100948	78015056	25958	-0.3489	NEUTRAL	NA	267	Too-Many
TCGA.AH.6897	18	100948	78015056	25960	-0.4739	NEUTRAL	NA	267	Too-Many
TCGA.AM.5821	18	100948	78015056	25939	-0.0171	NEUTRAL	NA	267	Too-Many
TCGA.AY.6197	18	100948	78015056	25446	-0.0084	NEUTRAL	NA	267	Too-Many
TCGA.AY.6386	18	100948	78015056	26002	-0.0047	NEUTRAL	NA	267	Too-Many
TCGA.AY.A71X	18	100948	78015056	26004	0.0019	NEUTRAL	NA	267	Too-Many
TCGA.AY.A8YK	18	100948	78015056	26009	-0.4458	NEUTRAL	NA	267	Too-Many
TCGA.AZ.4315	18	100948	78015056	25986	-0.0106	NEUTRAL	NA	267	Too-Many
TCGA.AZ.4323	18	100948	78015056	25921	-0.0219	NEUTRAL	NA	267	Too-Many
TCGA.AZ.4615	18	100948	78015056	25989	-0.015	NEUTRAL	NA	267	Too-Many
TCGA.AZ.4616	18	100948	78015056	25943	-0.3517	NEUTRAL	NA	267	Too-Many
TCGA.AZ.5403	18	100948	78015056	25976	-0.2439	NEUTRAL	NA	267	Too-Many
TCGA.AZ.6598	18	100948	78015056	26028	-0.001	NEUTRAL	NA	267	Too-Many
TCGA.AZ.6601	18	100948	78015056	26023	-0.0367	NEUTRAL	NA	267	Too-Many
TCGA.AZ.6605	18	100948	78015056	25932	-0.3451	NEUTRAL	NA	267	Too-Many
TCGA.BM.6198	18	100948	78015056	26027	-0.47445	NEUTRAL	NA	267	Too-Many
TCGA.CA.5255	18	100948	78015056	25931	-0.0074	NEUTRAL	NA	267	Too-Many
TCGA.CA.5796	18	100948	78015056	25952	-0.0249	NEUTRAL	NA	267	Too-Many
TCGA.CA.5797	18	100948	78015056	25983	-0.3917	NEUTRAL	NA	267	Too-Many
TCGA.CA.6716	18	100948	78015056	25963	-0.2888	NEUTRAL	NA	267	Too-Many
TCGA.CA.6717	18	100948	78015056	25913	-0.0025	NEUTRAL	NA	267	Too-Many
TCGA.CA.6718	18	100948	78015056	25917	-0.0215	NEUTRAL	NA	267	Too-Many
TCGA.CA.6719	18	100948	78015056	25942	-0.3541	NEUTRAL	NA	267	Too-Many
TCGA.CI.6619	18	100948	78015056	25977	-0.1636	NEUTRAL	NA	267	Too-Many
TCGA.CI.6620	18	100948	78015056	25965	-0.4701	NEUTRAL	NA	267	Too-Many
TCGA.CI.6623	18	100948	78015056	25984	-0.4045	NEUTRAL	NA	267	Too-Many
TCGA.CI.6624	18	100948	78015056	25974	-0.1364	NEUTRAL	NA	267	Too-Many
TCGA.CK.4947	18	100948	78015056	25967	-0.0169	NEUTRAL	NA	267	Too-Many
TCGA.CK.4950	18	100948	78015056	25819	-0.0165	NEUTRAL	NA	267	Too-Many
TCGA.CK.4951	18	100948	78015056	25909	-0.0167	NEUTRAL	NA	267	Too-Many
TCGA.CK.5913	18	100948	78015056	25982	-0.0151	NEUTRAL	NA	267	Too-Many
TCGA.CK.5915	18	100948	78015056	25960	-0.2534	NEUTRAL	NA	267	Too-Many
TCGA.CK.5916	18	100948	78015056	25967	-0.0048	NEUTRAL	NA	267	Too-Many
TCGA.CK.6747	18	100948	78015056	25916	-0.004	NEUTRAL	NA	267	Too-Many
TCGA.CK.6748	18	100948	78015056	25969	-0.4045	NEUTRAL	NA	267	Too-Many
TCGA.CK.6751	18	100948	78015056	25873	-0.0088	NEUTRAL	NA	267	Too-Many
TCGA.CM.4743	18	100948	78015056	26027	0.0047	NEUTRAL	NA	267	Too-Many
TCGA.CM.4747	18	100948	78015056	25985	-0.4077	NEUTRAL	NA	267	Too-Many
TCGA.CM.4752	18	100948	78015056	25988	-0.33	NEUTRAL	NA	267	Too-Many
TCGA.CM.5344	18	100948	78015056	26022	-0.2655	NEUTRAL	NA	267	Too-Many
TCGA.CM.5349	18	100948	78015056	26025	-0.4395	NEUTRAL	NA	267	Too-Many
TCGA.CM.5860	18	100948	78015056	25969	-0.085	NEUTRAL	NA	267	Too-Many
TCGA.CM.5861	18	100948	78015056	25975	-0.008	NEUTRAL	NA	267	Too-Many
TCGA.CM.5863	18	100948	78015056	25973	-0.0423	NEUTRAL	NA	267	Too-Many
TCGA.CM.6161	18	100948	78015056	25959	-0.005	NEUTRAL	NA	267	Too-Many
TCGA.CM.6162	18	100948	78015056	25883	0.0033	NEUTRAL	NA	267	Too-Many
TCGA.CM.6164	18	100948	78015056	25978	-0.4743	NEUTRAL	NA	267	Too-Many
TCGA.CM.6166	18	100948	78015056	26021	-0.4432	NEUTRAL	NA	267	Too-Many
TCGA.CM.6167	18	100948	78015056	26009	-0.0082	NEUTRAL	NA	267	Too-Many
TCGA.CM.6168	18	100948	78015056	26011	0.0026	NEUTRAL	NA	267	Too-Many
TCGA.CM.6171	18	100948	78015056	26023	0.2304	NEUTRAL	NA	267	Too-Many
TCGA.CM.6674	18	100948	78015056	25945	0	NEUTRAL	NA	267	Too-Many
TCGA.CM.6678	18	100948	78015056	25950	-0.147	NEUTRAL	NA	267	Too-Many
TCGA.D5.6529	18	100948	78015056	26021	-0.2306	NEUTRAL	NA	267	Too-Many
TCGA.D5.6530	18	100948	78015056	26031	0.0076	NEUTRAL	NA	267	Too-Many
TCGA.D5.6534	18	100948	78015056	25942	-0.0045	NEUTRAL	NA	267	Too-Many
TCGA.D5.6536	18	100948	78015056	26027	-0.3367	NEUTRAL	NA	267	Too-Many
TCGA.D5.6537	18	100948	78015056	25854	-0.0175	NEUTRAL	NA	267	Too-Many
TCGA.D5.6539	18	100948	78015056	25980	-0.182	NEUTRAL	NA	267	Too-Many
TCGA.D5.6540	18	100948	78015056	25978	0.2923	NEUTRAL	NA	267	Too-Many
TCGA.D5.6920	18	100948	78015056	25957	-0.0033	NEUTRAL	NA	267	Too-Many
TCGA.D5.6924	18	100948	78015056	25962	-0.3316	NEUTRAL	NA	267	Too-Many
TCGA.D5.6928	18	100948	78015056	25957	0.1831	NEUTRAL	NA	267	Too-Many
TCGA.D5.6930	18	100948	78015056	25960	-0.0088	NEUTRAL	NA	267	Too-Many
TCGA.D5.7000	18	100948	78015056	25904	-0.029	NEUTRAL	NA	267	Too-Many
TCGA.DC.4749	18	100948	78015056	26034	-0.4998	NEUTRAL	NA	267	Too-Many
TCGA.DC.5337	18	100948	78015056	25911	-0.1601	NEUTRAL	NA	267	Too-Many
TCGA.DC.6155	18	100948	78015056	25892	-0.3909	NEUTRAL	NA	267	Too-Many
TCGA.DC.6681	18	100948	78015056	25974	-0.4539	NEUTRAL	NA	267	Too-Many
TCGA.DC.6682	18	100948	78015056	25982	-0.2697	NEUTRAL	NA	267	Too-Many
TCGA.DC.6683	18	100948	78015056	25949	-0.3683	NEUTRAL	NA	267	Too-Many
TCGA.DM.A0X9	18	100948	78015056	26011	-0.0179	NEUTRAL	NA	267	Too-Many
TCGA.DM.A280	18	100948	78015056	25968	-0.0126	NEUTRAL	NA	267	Too-Many
TCGA.DM.A28G	18	100948	78015056	25985	-0.0094	NEUTRAL	NA	267	Too-Many
TCGA.DY.A1H8	18	100948	78015056	26020	-0.0405	NEUTRAL	NA	267	Too-Many
TCGA.EI.6506	18	100948	78015056	25985	-0.3896	NEUTRAL	NA	267	Too-Many
TCGA.EI.6507	18	100948	78015056	26021	-0.0081	NEUTRAL	NA	267	Too-Many
TCGA.EI.6510	18	100948	78015056	25981	-0.2026	NEUTRAL	NA	267	Too-Many
TCGA.EI.6882	18	100948	78015056	25961	-0.0147	NEUTRAL	NA	267	Too-Many
TCGA.EI.6884	18	100948	78015056	25941	-0.2808	NEUTRAL	NA	267	Too-Many
TCGA.EI.6885	18	100948	78015056	25960	-0.3115	NEUTRAL	NA	267	Too-Many
TCGA.EI.6917	18	100948	78015056	25941	-0.0029	NEUTRAL	NA	267	Too-Many
TCGA.EI.7002	18	100948	78015056	25961	-0.476	NEUTRAL	NA	267	Too-Many
TCGA.F4.6569	18	100948	78015056	26024	-0.3251	NEUTRAL	NA	267	Too-Many
TCGA.F4.6570	18	100948	78015056	26022	0.0327	NEUTRAL	NA	267	Too-Many
TCGA.F4.6703	18	100948	78015056	25969	-0.0517	NEUTRAL	NA	267	Too-Many
TCGA.F4.6805	18	100948	78015056	25968	-0.4506	NEUTRAL	NA	267	Too-Many
TCGA.F4.6806	18	100948	78015056	25889	-0.2386	NEUTRAL	NA	267	Too-Many
TCGA.F4.6807	18	100948	78015056	25931	-0.4622	NEUTRAL	NA	267	Too-Many
TCGA.F4.6809	18	100948	78015056	25960	-0.4484	NEUTRAL	NA	267	Too-Many
TCGA.F4.6856	18	100948	78015056	25961	-0.0118	NEUTRAL	NA	267	Too-Many
TCGA.F5.6464	18	100948	78015056	26029	0.2222	NEUTRAL	NA	267	Too-Many
TCGA.F5.6465	18	100948	78015056	26032	-0.2824	NEUTRAL	NA	267	Too-Many
TCGA.F5.6702	18	100948	78015056	25936	-0.3466	NEUTRAL	NA	267	Too-Many
TCGA.F5.6810	18	100948	78015056	25980	-0.4688	NEUTRAL	NA	267	Too-Many
TCGA.F5.6812	18	100948	78015056	25971	-0.4435	NEUTRAL	NA	267	Too-Many
TCGA.F5.6861	18	100948	78015056	25949	-0.0308	NEUTRAL	NA	267	Too-Many
TCGA.G4.6293	18	100948	78015056	26018	0.0004	NEUTRAL	NA	267	Too-Many
TCGA.G4.6295	18	100948	78015056	26032	-0.371	NEUTRAL	NA	267	Too-Many
TCGA.G4.6297	18	100948	78015056	26022	-0.1357	NEUTRAL	NA	267	Too-Many
TCGA.G4.6298	18	100948	78015056	26027	-0.4736	NEUTRAL	NA	267	Too-Many
TCGA.G4.6303	18	100948	78015056	26023	-0.4075	NEUTRAL	NA	267	Too-Many
TCGA.G4.6304	18	100948	78015056	25962	0	NEUTRAL	NA	267	Too-Many
TCGA.G4.6307	18	100948	78015056	26029	-0.4072	NEUTRAL	NA	267	Too-Many
TCGA.G4.6309	18	100948	78015056	25971	-0.0174	NEUTRAL	NA	267	Too-Many
TCGA.G4.6315	18	100948	78015056	26027	-0.4451	NEUTRAL	NA	267	Too-Many
TCGA.G4.6320	18	100948	78015056	26031	-0.0111	NEUTRAL	NA	267	Too-Many
TCGA.G4.6321	18	100948	78015056	26026	-0.0036	NEUTRAL	NA	267	Too-Many
TCGA.G4.6323	18	100948	78015056	26031	0.0006	NEUTRAL	NA	267	Too-Many
TCGA.G4.6586	18	100948	78015056	26024	-0.0013	NEUTRAL	NA	267	Too-Many
TCGA.G4.6588	18	100948	78015056	26023	-0.0037	NEUTRAL	NA	267	Too-Many
TCGA.G4.6625	18	100948	78015056	26018	-0.2106	NEUTRAL	NA	267	Too-Many
TCGA.G5.6235	18	100948	78015056	26035	-0.2764	NEUTRAL	NA	267	Too-Many
TCGA.NH.A50T	18	100948	78015056	25866	-0.3468	NEUTRAL	NA	267	Too-Many
TCGA.NH.A5IV	18	100948	78015056	25970	0.0048	NEUTRAL	NA	267	Too-Many
TCGA.QG.A5YW	18	100948	78015056	25875	-0.0401	NEUTRAL	NA	267	Too-Many
TCGA.QG.A5Z2	18	100948	78015056	25854	-0.0031	NEUTRAL	NA	267	Too-Many
TCGA.WS.AB45	18	100948	78015056	26003	-0.0061	NEUTRAL	NA	267	Too-Many
TCGA.AG.A01W.01A	18	153277	12319528	581	-0.2553	NEUTRAL	NA	50	"ADCYAP1,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SMCHD1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.F5.6811.01A	18	153296	2534153	87	0.1947	NEUTRAL	NA	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.CK.4952.01A	18	153296	42751208	1798	-0.1028	NEUTRAL	NA	135	Too-Many
TCGA.DC.6160.01A	18	153296	76106096	2849	-0.4579	NEUTRAL	NA	256	Too-Many
TCGA.A6.3810.01A	18	158610	54426078	2147	-0.223	NEUTRAL	NA	187	Too-Many
TCGA.AA.A02K.01A	18	163277	44702527	1876	-0.3676	NEUTRAL	NA	154	Too-Many
TCGA.AG.3909.01A	18	163296	226752	23	-0.1235	NEUTRAL	NA	2	"THOC1,USP14"
TCGA.AA.A010.01A	18	163296	254218	27	0.1399	NEUTRAL	NA	2	"THOC1,USP14"
TCGA.AA.A01C.01A	18	163296	685868	64	-0.4314	NEUTRAL	NA	8	"CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14"
TCGA.AA.A01I.01A	18	163296	688492	65	-0.2789	NEUTRAL	NA	8	"CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14"
TCGA.AA.A00L.01A	18	163296	756510	57	-0.1078	NEUTRAL	NA	9	"CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AG.A016.01A	18	163296	2544153	84	-0.0446	NEUTRAL	NA	11	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,METTL4,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AG.A02X.01A	18	163296	2566843	90	-0.3941	NEUTRAL	NA	11	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,METTL4,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AF.3914.01A	18	163296	2913085	157	-0.0377	NEUTRAL	NA	14	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,METTL4,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.A02R.01A	18	163296	3086035	181	0.0621	NEUTRAL	NA	16	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,LPIN2,METTL4,MYOM1,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.A01Q.01A	18	163296	11752384	346	0.1229	NEUTRAL	NA	44	"ADCYAP1,ANKRD12,APCDD1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AG.3891.01A	18	163296	12277072	529	-0.4901	NEUTRAL	NA	49	"ADCYAP1,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AG.3611.01A	18	163296	13645174	481	-0.262	NEUTRAL	NA	59	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.A6.3808.01A	18	163296	13681557	673	0.0145	NEUTRAL	NA	60	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AA.3862.01A	18	163296	14797657	709	-0.2694	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.3861.01A	18	163296	14799122	710	-0.0537	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.A004.01A	18	163296	14851521	669	-0.4745	NEUTRAL	NA	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.CK.4948.01B	18	163296	18550297	744	-0.0433	NEUTRAL	NA	67	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.A02H.01A	18	163296	21118457	826	-0.4447	NEUTRAL	NA	80	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AA.3930.01A	18	163296	22642593	1075	-0.0106	NEUTRAL	NA	88	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AG.A00Y.01A	18	163296	22669389	994	0.0329	NEUTRAL	NA	88	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AA.3980.01A	18	163296	24524225	1129	0.0784	NEUTRAL	NA	94	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AA.A01D.01A	18	163296	31226199	1248	0.1263	NEUTRAL	NA	113	Too-Many
TCGA.AG.A02G.01A	18	163296	34801930	1440	0.2839	NEUTRAL	NA	130	Too-Many
TCGA.AA.A00O.01A	18	163296	37202036	1440	-0.463	NEUTRAL	NA	131	Too-Many
TCGA.AA.A00Q.01A	18	163296	42643066	1211	0.1365	NEUTRAL	NA	135	Too-Many
TCGA.AA.A02E.01A	18	163296	44660860	1644	-0.3648	NEUTRAL	NA	153	Too-Many
TCGA.AG.A032.01A	18	163296	51052937	1851	-0.4661	NEUTRAL	NA	177	Too-Many
TCGA.AA.A017.01A	18	163296	61259550	2240	-0.4558	NEUTRAL	NA	220	Too-Many
TCGA.AA.A01F.01A	18	163296	77066954	2034	-0.3159	NEUTRAL	NA	258	Too-Many
TCGA.AA.A029.01A	18	163296	77104210	2557	-0.1839	NEUTRAL	NA	258	Too-Many
TCGA.AA.A01K.01A	18	163296	77960563	2588	-0.3109	NEUTRAL	NA	267	Too-Many
TCGA.AA.A024.01A	18	163296	77960563	2667	-0.0379	NEUTRAL	NA	267	Too-Many
TCGA.AA.A02W.01A	18	163296	77960563	2602	-0.3756	NEUTRAL	NA	267	Too-Many
TCGA.AG.A00H.01A	18	163296	77960563	2602	-0.3731	NEUTRAL	NA	267	Too-Many
TCGA.AG.A011.01A	18	163296	77960563	2610	-0.2968	NEUTRAL	NA	267	Too-Many
TCGA.AG.A015.01A	18	163296	77960563	2605	-0.1489	NEUTRAL	NA	267	Too-Many
TCGA.AG.A01J.01A	18	163296	77960563	2599	-0.3849	NEUTRAL	NA	267	Too-Many
TCGA.AG.A025.01A	18	163296	77960563	2627	-0.0616	NEUTRAL	NA	267	Too-Many
TCGA.AA.3815.01A	18	163296	78005105	2816	-0.0468	NEUTRAL	NA	267	Too-Many
TCGA.AA.3967.01A	18	163296	78005105	2665	-0.3605	NEUTRAL	NA	267	Too-Many
TCGA.AA.A00J.01A	18	163296	78005105	2078	-0.0141	NEUTRAL	NA	267	Too-Many
TCGA.AH.6549.01A	18	163296	78005105	2836	-0.388	NEUTRAL	NA	267	Too-Many
TCGA.AY.A54L.01A	18	163296	78005105	2851	-0.3966	NEUTRAL	NA	267	Too-Many
TCGA.CM.4744.01A	18	163296	78005105	2853	-0.0431	NEUTRAL	NA	267	Too-Many
TCGA.DM.A1D6	18	195404	3054586	1145	0.0467	NEUTRAL	NA	15	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,LPIN2,METTL4,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AG.A023.01A	18	199154	77960563	2580	-0.4667	NEUTRAL	NA	267	Too-Many
TCGA.AA.3982	18	200575	220340	6	-0.4953	NEUTRAL	NA	2	"THOC1,USP14"
TCGA.AA.3982	18	225050	983187	354	0.252	NEUTRAL	NA	9	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,YES1"
TCGA.AA.A02O	18	235927	33557465	10056	-0.0036	NEUTRAL	NA	122	Too-Many
TCGA.AA.A00N.01A	18	247812	706432	49	-0.4369	NEUTRAL	NA	7	"CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS"
TCGA.AG.A00C.01A	18	254218	732792	48	-0.4966	NEUTRAL	NA	8	"CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,YES1"
TCGA.AG.4009.01A	18	260134	480634	12	-0.0891	NEUTRAL	NA	2	"COLEC12,THOC1"
TCGA.EI.6508	18	469796	529675	23	-0.0467	NEUTRAL	NA	1	COLEC12
TCGA.AA.A010.01A	18	480634	747872	39	-0.1779	NEUTRAL	NA	7	"CETN1,CLUL1,COLEC12,ENOSF1,TYMS,TYMSOS,YES1"
TCGA.AG.A01L.01A	18	659598	690988	16	-0.0803	NEUTRAL	NA	2	"ENOSF1,TYMS"
TCGA.EI.6508	18	660382	14770147	5463	-0.005	NEUTRAL	NA	60	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CHMP1B,CIDEA,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AG.3909.01A	18	675263	2847789	92	-0.0689	NEUTRAL	NA	7	"ADCYAP1,EMILIN2,ENOSF1,METTL4,NDC80,SMCHD1,YES1"
TCGA.AG.4009.01A	18	690490	3879132	163	-0.3621	NEUTRAL	NA	13	"ADCYAP1,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,YES1"
TCGA.AG.A01L.01A	18	693799	2890528	84	-0.485	NEUTRAL	NA	7	"ADCYAP1,EMILIN2,ENOSF1,METTL4,NDC80,SMCHD1,YES1"
TCGA.AA.A01I.01A	18	693799	77960563	2538	-0.137	NEUTRAL	NA	260	Too-Many
TCGA.AA.A01C.01A	18	724377	5433864	175	-0.4808	NEUTRAL	NA	15	"ADCYAP1,C18orf42,DLGAP1,EMILIN2,EPB41L3,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,YES1,ZBTB14"
TCGA.AH.6903	18	865027	2521739	669	-0.0223	NEUTRAL	NA	1	ADCYAP1
TCGA.AG.3894	18	865027	33845856	9848	0.0051	NEUTRAL	NA	118	Too-Many
TCGA.AA.3982	18	985107	1078944	37	-0.2453	NEUTRAL	NA	0	None
TCGA.AA.3850	18	1017069	2211482	467	-0.50095	NEUTRAL	NA	0	None
TCGA.AA.3811	18	1020819	2023692	357	-0.1483	NEUTRAL	NA	0	None
TCGA.AA.3982	18	1093205	1713346	196	-0.3408	NEUTRAL	NA	0	None
TCGA.DM.A1D4	18	1592250	1742271	58	0.029	NEUTRAL	NA	0	None
TCGA.AA.3982	18	1718331	1888195	74	0.1696	NEUTRAL	NA	0	None
TCGA.D5.6922	18	1842187	6086899	1744	0.2491	NEUTRAL	NA	15	"C18orf42,DLGAP1,EMILIN2,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,TMEM200C,ZBTB14"
TCGA.AD.6548	18	1877027	3800807	745	-0.4343	NEUTRAL	NA	10	"DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1"
TCGA.AA.3982	18	1907315	2690355	344	0.1686	NEUTRAL	NA	3	"METTL4,NDC80,SMCHD1"
TCGA.AA.3811	18	2023812	4155508	850	0.307	NEUTRAL	NA	10	"DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1"
TCGA.AA.3850	18	2238245	4106163	722	0.24025	NEUTRAL	NA	10	"DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1"
TCGA.AA.3842	18	2259146	64694500	19792	-0.4868	NEUTRAL	NA	220	Too-Many
TCGA.F4.6461	18	2441458	3590272	430	0.0102	NEUTRAL	NA	10	"DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1"
TCGA.F5.6811.01A	18	2534600	11876499	442	-0.3774	NEUTRAL	NA	35	"ANKRD12,APCDD1,ARHGAP28,C18orf42,CHMP1B,DLGAP1,EMILIN2,EPB41L3,GNAL,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SMCHD1,TGIF1,TMEM200C,TWSG1,TXNDC2,VAPA,ZBTB14"
TCGA.AA.A00L.01A	18	2538970	14537782	454	-0.114	NEUTRAL	NA	55	"AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CHMP1B,CIDEA,DLGAP1,EMILIN2,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,TMEM200C,TUBB6,TWSG1,TXNDC2,VAPA,ZBTB14,ZNF519"
TCGA.AA.A00N.01A	18	2688375	2724899	12	0.1659	NEUTRAL	NA	1	SMCHD1
TCGA.AA.A010.01A	18	2688375	2982628	65	0.0453	NEUTRAL	NA	3	"EMILIN2,LPIN2,SMCHD1"
TCGA.DM.A282.01A	18	2724899	2728417	3	0.2954	NEUTRAL	NA	1	SMCHD1
TCGA.AA.3982	18	2741049	2748817	6	-0.048	NEUTRAL	NA	1	SMCHD1
TCGA.AA.3982	18	2783455	3254794	185	0.0245	NEUTRAL	NA	5	"EMILIN2,LPIN2,MYL12A,MYOM1,SMCHD1"
TCGA.AZ.4684.01A	18	2847789	5145509	85	-0.1217	NEUTRAL	NA	8	"C18orf42,DLGAP1,EMILIN2,LPIN2,MYL12A,MYL12B,MYOM1,TGIF1"
TCGA.AG.A01L.01A	18	2908866	2913085	3	0.3482	NEUTRAL	NA	1	EMILIN2
TCGA.AA.A00D.01A	18	2908866	3188697	27	-0.0644	NEUTRAL	NA	3	"EMILIN2,LPIN2,MYOM1"
TCGA.AG.3909.01A	18	2922014	3214920	50	0.0972	NEUTRAL	NA	2	"LPIN2,MYOM1"
TCGA.AF.3914.01A	18	2925175	5445092	90	0.0397	NEUTRAL	NA	9	"C18orf42,DLGAP1,EPB41L3,LPIN2,MYL12A,MYL12B,MYOM1,TGIF1,ZBTB14"
TCGA.AA.A00A.01A	18	2937679	6171787	56	0.2373	NEUTRAL	NA	11	"C18orf42,DLGAP1,EPB41L3,L3MBTL4,LPIN2,MYL12A,MYL12B,MYOM1,TGIF1,TMEM200C,ZBTB14"
TCGA.DM.A1D6	18	3059506	4911252	749	-0.0487	NEUTRAL	NA	5	"DLGAP1,MYL12A,MYL12B,MYOM1,TGIF1"
TCGA.AA.A02R.01A	18	3094116	77960563	2418	-0.0799	NEUTRAL	NA	252	Too-Many
TCGA.AG.A02X.01A	18	3134601	8828874	210	-0.3115	NEUTRAL	NA	16	"ARHGAP28,C18orf42,DLGAP1,EPB41L3,L3MBTL4,LAMA1,LRRC30,MTCL1,MYL12A,MYL12B,MYOM1,PTPRM,RAB12,TGIF1,TMEM200C,ZBTB14"
TCGA.AG.A00C.01A	18	3253195	3508516	12	-0.3019	NEUTRAL	NA	4	"DLGAP1,MYL12A,MYL12B,TGIF1"
TCGA.AA.A00D.01A	18	3253195	3534165	13	0.3475	NEUTRAL	NA	4	"DLGAP1,MYL12A,MYL12B,TGIF1"
TCGA.AA.3982	18	3287104	3885558	206	-0.0448	NEUTRAL	NA	2	"DLGAP1,TGIF1"
TCGA.AG.3909.01A	18	3499193	8343384	157	0.0401	NEUTRAL	NA	10	"ARHGAP28,C18orf42,DLGAP1,EPB41L3,L3MBTL4,LAMA1,LRRC30,PTPRM,TMEM200C,ZBTB14"
TCGA.AH.6903	18	3509148	4079928	232	0.0142	NEUTRAL	NA	1	DLGAP1
TCGA.AA.A00D.01A	18	3567437	6942038	61	-0.2443	NEUTRAL	NA	8	"ARHGAP28,C18orf42,DLGAP1,EPB41L3,L3MBTL4,LAMA1,TMEM200C,ZBTB14"
TCGA.F4.6461	18	3592144	8546672	2098	-0.4832	NEUTRAL	NA	10	"ARHGAP28,C18orf42,DLGAP1,EPB41L3,L3MBTL4,LAMA1,LRRC30,PTPRM,TMEM200C,ZBTB14"
TCGA.CL.4957	18	3607745	25355265	6368	-0.454	NEUTRAL	NA	75	"ABHD3,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CHMP1B,CHST9,CIDEA,CTAGE1,DLGAP1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LRRC30,MC2R,MC5R,MIB1,MPPE1,MTCL1,NAPG,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SNRPD1,SPIRE1,SS18,TAF4B,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,VAPA,ZBTB14,ZNF519,ZNF521"
TCGA.DC.6157	18	3607745	74273829	23097	-0.3212	NEUTRAL	NA	234	Too-Many
TCGA.CM.4748	18	3607745	78015056	24645	-0.0156	NEUTRAL	NA	248	Too-Many
TCGA.CA.5256	18	3704909	9590433	2448	-0.4265	NEUTRAL	NA	17	"ANKRD12,ARHGAP28,C18orf42,DLGAP1,EPB41L3,L3MBTL4,LAMA1,LRRC30,MTCL1,NDUFV2,PPP4R1,PTPRM,RAB12,RALBP1,TMEM200C,TWSG1,ZBTB14"
TCGA.AD.6548	18	3807348	5521211	699	0	NEUTRAL	NA	4	"C18orf42,DLGAP1,EPB41L3,ZBTB14"
TCGA.CA.5254	18	3862460	34616391	8986	-0.4811	NEUTRAL	NA	111	Too-Many
TCGA.AA.3982	18	3889052	4182757	153	0.2586	NEUTRAL	NA	1	DLGAP1
TCGA.AA.3870	18	3964698	8629719	2020	-0.0199	NEUTRAL	NA	11	"ARHGAP28,C18orf42,DLGAP1,EPB41L3,L3MBTL4,LAMA1,LRRC30,PTPRM,RAB12,TMEM200C,ZBTB14"
TCGA.G4.6310	18	3972068	47197178	13037	-0.425	NEUTRAL	NA	145	Too-Many
TCGA.CM.5868	18	4062484	78015056	24424	-0.3766	NEUTRAL	NA	248	Too-Many
TCGA.AA.3850	18	4110102	5211031	447	-0.38125	NEUTRAL	NA	2	"C18orf42,DLGAP1"
TCGA.AA.3811	18	4155684	4182979	14	-0.3711	NEUTRAL	NA	1	DLGAP1
TCGA.AA.3982	18	4192762	4415282	128	0.0793	NEUTRAL	NA	1	DLGAP1
TCGA.AA.3811	18	4192762	4559717	196	0.0813	NEUTRAL	NA	1	DLGAP1
TCGA.DM.A1D4	18	4493178	4590282	33	0.0119	NEUTRAL	NA	0	None
TCGA.AA.3982	18	4579101	6688521	817	-0.3406	NEUTRAL	NA	5	"C18orf42,EPB41L3,L3MBTL4,TMEM200C,ZBTB14"
TCGA.AA.3811	18	4579101	24584170	5667	0.2289	NEUTRAL	NA	74	"ABHD3,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CHMP1B,CHST9,CIDEA,CTAGE1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LRRC30,MC2R,MC5R,MIB1,MPPE1,MTCL1,NAPG,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SNRPD1,SPIRE1,SS18,TAF4B,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,VAPA,ZBTB14,ZNF519,ZNF521"
TCGA.DM.A1D4	18	4712472	4756386	22	-0.0396	NEUTRAL	NA	0	None
TCGA.DM.A1D6	18	4925738	38460347	9737	-0.44	NEUTRAL	NA	111	Too-Many
TCGA.DM.A1D4	18	5115686	5224662	58	0.0299	NEUTRAL	NA	1	C18orf42
TCGA.AZ.4684.01A	18	5196946	7926554	130	-0.4791	NEUTRAL	NA	9	"ARHGAP28,C18orf42,EPB41L3,L3MBTL4,LAMA1,LRRC30,PTPRM,TMEM200C,ZBTB14"
TCGA.AA.3850	18	5215595	6875669	682	0.00305	NEUTRAL	NA	5	"ARHGAP28,EPB41L3,L3MBTL4,TMEM200C,ZBTB14"
TCGA.D5.6931	18	5290197	78015056	23906	0.0011	NEUTRAL	NA	246	Too-Many
TCGA.G4.6314	18	5293874	12327751	3015	-0.3437	NEUTRAL	NA	29	"ANKRD12,ANKRD62,APCDD1,ARHGAP28,CHMP1B,CIDEA,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LRRC30,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,TMEM200C,TUBB6,TWSG1,TXNDC2,VAPA,ZBTB14"
TCGA.DM.A1D4	18	5321714	5900772	220	-0.0094	NEUTRAL	NA	2	"EPB41L3,TMEM200C"
TCGA.AG.4009.01A	18	5394635	10697671	263	-0.3917	NEUTRAL	NA	20	"ANKRD12,APCDD1,ARHGAP28,EPB41L3,L3MBTL4,LAMA1,LRRC30,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,TMEM200C,TWSG1,TXNDC2,VAPA"
TCGA.AA.A00N.01A	18	5437970	6943151	44	0.1783	NEUTRAL	NA	5	"ARHGAP28,EPB41L3,L3MBTL4,LAMA1,TMEM200C"
TCGA.AD.6901	18	5594738	7080134	673	-0.2723	NEUTRAL	NA	5	"ARHGAP28,EPB41L3,L3MBTL4,LAMA1,TMEM200C"
TCGA.AA.A01S	18	5745037	9461195	1609	-0.03175	NEUTRAL	NA	11	"ANKRD12,ARHGAP28,L3MBTL4,LAMA1,LRRC30,MTCL1,NDUFV2,PTPRM,RAB12,TMEM200C,TWSG1"
TCGA.AF.3914.01A	18	5956188	10697671	239	0.0971	NEUTRAL	NA	18	"ANKRD12,APCDD1,ARHGAP28,L3MBTL4,LAMA1,LRRC30,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.NH.A50V	18	5990747	19234817	3417	-0.1298	NEUTRAL	NA	47	"ABHD3,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,CEP192,CEP76,CHMP1B,CIDEA,ESCO1,FAM210A,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LRRC30,MC2R,MC5R,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SNRPD1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.D5.6922	18	6088171	6136527	15	-0.2954	NEUTRAL	NA	1	L3MBTL4
TCGA.DM.A1HB	18	6113747	78015056	23163	-0.0174	NEUTRAL	NA	243	Too-Many
TCGA.D5.6922	18	6142247	23853731	4780	0.2236	NEUTRAL	NA	67	"ABHD3,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf8,CABLES1,CABYR,CEP192,CEP76,CHMP1B,CIDEA,CTAGE1,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LRRC30,MC2R,MC5R,MIB1,MPPE1,MTCL1,NAPG,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SNRPD1,SPIRE1,SS18,TAF4B,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519,ZNF521"
TCGA.NH.A6GB	18	6580727	6764632	87	-0.3457	NEUTRAL	NA	0	None
TCGA.A6.6138	18	6626371	19735668	3291	-0.0143	NEUTRAL	NA	47	"ABHD3,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,CEP192,CEP76,CHMP1B,CIDEA,ESCO1,FAM210A,GNAL,GREB1L,IMPA2,LAMA1,LDLRAD4,LRRC30,MC2R,MC5R,MIB1,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SNRPD1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AA.3982	18	6713489	12160889	2391	-0.1041	NEUTRAL	NA	23	"ANKRD12,ANKRD62,APCDD1,ARHGAP28,CHMP1B,GNAL,IMPA2,LAMA1,LRRC30,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,TWSG1,TXNDC2,VAPA"
TCGA.NH.A6GB	18	6767056	78015056	23348	-0.0271	NEUTRAL	NA	242	Too-Many
TCGA.AA.3941	18	6877191	7470491	282	-0.0231	NEUTRAL	NA	3	"ARHGAP28,LAMA1,LRRC30"
TCGA.AA.A010.01A	18	7043178	8319093	31	0.0251	NEUTRAL	NA	3	"LAMA1,LRRC30,PTPRM"
TCGA.AA.A01C.01A	18	7079927	18587969	345	-0.1623	NEUTRAL	NA	41	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LAMA1,LDLRAD4,LRRC30,MC2R,MC5R,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AA.3858	18	7270600	7466109	71	0.2739	NEUTRAL	NA	0	None
TCGA.AG.3728	18	7349615	8041765	285	0.0218	NEUTRAL	NA	1	PTPRM
TCGA.AA.3850	18	7470298	8330861	341	-0.05595	NEUTRAL	NA	1	PTPRM
TCGA.AA.3858	18	7470298	21668063	3424	-0.0902	NEUTRAL	NA	55	"ABHD3,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,C18orf8,CABLES1,CEP192,CEP76,CHMP1B,CIDEA,CTAGE1,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,LAMA3,LDLRAD4,MC2R,MC5R,MIB1,MPPE1,MTCL1,NAPG,NDUFV2,NPC1,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SNRPD1,SPIRE1,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AA.3941	18	7470752	8330861	338	-0.4172	NEUTRAL	NA	1	PTPRM
TCGA.AF.6136	18	7486174	14919307	2706	-0.3822	NEUTRAL	NA	38	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AH.6903	18	7856855	48594897	11942	-0.0007	NEUTRAL	NA	147	Too-Many
TCGA.AA.A00D.01A	18	7888072	7926554	3	-0.2114	NEUTRAL	NA	1	PTPRM
TCGA.AZ.4684.01A	18	7949147	9102679	51	-0.1197	NEUTRAL	NA	4	"MTCL1,NDUFV2,PTPRM,RAB12"
TCGA.AA.A00D.01A	18	7949147	18540031	256	0.1919	NEUTRAL	NA	39	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.DY.A1DF	18	8013715	11746663	1685	-0.0814	NEUTRAL	NA	16	"ANKRD12,APCDD1,GNAL,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,TWSG1,TXNDC2,VAPA"
TCGA.AA.A00N.01A	18	8314720	9102679	36	-0.2256	NEUTRAL	NA	4	"MTCL1,NDUFV2,PTPRM,RAB12"
TCGA.AA.3941	18	8331139	11322740	1425	-0.0877	NEUTRAL	NA	14	"ANKRD12,APCDD1,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.AA.3850	18	8331139	13947892	2242	0.27275	NEUTRAL	NA	35	"AFG3L2,ANKRD12,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA"
TCGA.AG.A00C.01A	18	8376413	8828874	27	-0.5114	NEUTRAL	NA	3	"MTCL1,PTPRM,RAB12"
TCGA.F4.6461	18	8549457	13617286	1974	-0.0315	NEUTRAL	NA	30	"AFG3L2,ANKRD12,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,GNAL,IMPA2,LDLRAD4,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA"
TCGA.AA.3870	18	8638028	10129075	662	-0.3807	NEUTRAL	NA	10	"ANKRD12,MTCL1,NDUFV2,PPP4R1,RAB12,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.AG.A00C.01A	18	9104119	9134134	8	0.0639	NEUTRAL	NA	1	NDUFV2
TCGA.DT.5265	18	9156349	10494962	613	-0.0007	NEUTRAL	NA	8	"ANKRD12,APCDD1,PPP4R1,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.AG.3909.01A	18	9182378	9263751	12	0.1079	NEUTRAL	NA	1	ANKRD12
TCGA.AA.A010.01A	18	9182378	9570107	37	0.2586	NEUTRAL	NA	4	"ANKRD12,PPP4R1,RALBP1,TWSG1"
TCGA.AG.3605.01A	18	9254940	73000146	29	-0.3141	NEUTRAL	NA	218	Too-Many
TCGA.AZ.4684.01A	18	9275525	14513664	259	-0.2816	NEUTRAL	NA	33	"AFG3L2,ANKRD12,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,NAPG,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.G4.6322	18	9285823	19435194	2025	-0.0409	NEUTRAL	NA	40	"ABHD3,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,ESCO1,FAM210A,GNAL,GREB1L,IMPA2,LDLRAD4,MC2R,MC5R,MIB1,MPPE1,NAPG,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SNRPD1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AA.A00N.01A	18	9535650	10468426	36	-0.0485	NEUTRAL	NA	6	"APCDD1,PPP4R1,RAB31,RALBP1,TXNDC2,VAPA"
TCGA.AD.6548	18	9551027	78015056	22087	-0.0128	NEUTRAL	NA	232	Too-Many
TCGA.AG.3909.01A	18	9559369	9813955	14	-0.0224	NEUTRAL	NA	2	"PPP4R1,RAB31"
TCGA.A6.6142	18	9781248	78015056	22050	0.0303	NEUTRAL	NA	231	Too-Many
TCGA.AG.3909.01A	18	9931780	10526026	11	-0.1645	NEUTRAL	NA	3	"APCDD1,NAPG,VAPA"
TCGA.CM.4746	18	9990160	78015056	21918	-0.0057	NEUTRAL	NA	228	Too-Many
TCGA.AG.3728	18	10029987	10571903	321	0.0053	NEUTRAL	NA	2	"APCDD1,NAPG"
TCGA.AA.A010.01A	18	10485440	12277072	58	0.2244	NEUTRAL	NA	10	"ANKRD62,APCDD1,CHMP1B,CIDEA,GNAL,IMPA2,MPPE1,NAPG,PIEZO2,SLC35G4"
TCGA.AG.A014.01A	18	10526026	14763743	189	-0.3095	NEUTRAL	NA	26	"AFG3L2,ANKRD30B,ANKRD62,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,NAPG,PIEZO2,POTEC,PSMG2,PTPN2,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,ZNF519"
TCGA.AG.3909.01A	18	10546286	10697671	14	0.0256	NEUTRAL	NA	2	"NAPG,PIEZO2"
TCGA.AA.A00N.01A	18	10548249	12948074	119	-0.4782	NEUTRAL	NA	17	"AFG3L2,ANKRD62,CEP76,CHMP1B,CIDEA,GNAL,IMPA2,MPPE1,NAPG,PIEZO2,PSMG2,PTPN2,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6"
TCGA.AG.A016.01A	18	10697671	13072710	115	-0.155	NEUTRAL	NA	17	"AFG3L2,ANKRD62,CEP192,CEP76,CHMP1B,CIDEA,GNAL,IMPA2,MPPE1,PIEZO2,PSMG2,PTPN2,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6"
TCGA.DT.5265	18	10905078	11325447	185	0.0207	NEUTRAL	NA	1	PIEZO2
TCGA.AA.3488	18	11033077	14352868	1023	0.0242	NEUTRAL	NA	23	"AFG3L2,ANKRD62,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,PIEZO2,PSMG2,PTPN2,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,ZNF519"
TCGA.AG.3584	18	11117537	12116279	362	-0.0332	NEUTRAL	NA	7	"ANKRD62,CHMP1B,GNAL,IMPA2,MPPE1,PIEZO2,SLC35G4"
TCGA.DT.5265	18	11336215	11648820	100	0.0134	NEUTRAL	NA	1	SLC35G4
TCGA.AA.3941	18	11339758	11446244	34	-0.1563	NEUTRAL	NA	0	None
TCGA.AA.3941	18	11452144	12110588	237	0.0154	NEUTRAL	NA	6	"ANKRD62,CHMP1B,GNAL,IMPA2,MPPE1,SLC35G4"
TCGA.AG.A02X.01A	18	11752384	44140035	1114	-0.268	NEUTRAL	NA	102	Too-Many
TCGA.AA.A01Q.01A	18	11752799	12340179	37	-0.2331	NEUTRAL	NA	8	"AFG3L2,ANKRD62,CHMP1B,CIDEA,GNAL,IMPA2,MPPE1,TUBB6"
TCGA.AG.4009.01A	18	11824885	12274044	27	-0.1347	NEUTRAL	NA	6	"ANKRD62,CHMP1B,CIDEA,GNAL,IMPA2,MPPE1"
TCGA.AF.3914.01A	18	11824885	12963142	94	-0.0023	NEUTRAL	NA	14	"AFG3L2,ANKRD62,CEP76,CHMP1B,CIDEA,GNAL,IMPA2,MPPE1,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.F5.6811.01A	18	11878609	12244301	13	0.2551	NEUTRAL	NA	4	"ANKRD62,GNAL,IMPA2,MPPE1"
TCGA.AG.A00C.01A	18	12030290	12985149	76	-0.3002	NEUTRAL	NA	11	"AFG3L2,ANKRD62,CEP76,CIDEA,IMPA2,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.D5.6929	18	12048607	13500284	345	0.036	NEUTRAL	NA	12	"AFG3L2,ANKRD62,CEP192,CEP76,CIDEA,LDLRAD4,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.AA.3870	18	12048607	14139715	610	-0.485	NEUTRAL	NA	17	"AFG3L2,ANKRD62,CEP192,CEP76,CIDEA,FAM210A,LDLRAD4,MC2R,MC5R,PSMG2,PTPN2,RNMT,SEH1L,SLMO1,SPIRE1,TUBB6,ZNF519"
TCGA.EI.7004	18	12162189	14993208	677	0.3499	NEUTRAL	NA	18	"AFG3L2,ANKRD30B,CEP192,CEP76,CIDEA,FAM210A,LDLRAD4,MC2R,MC5R,POTEC,PSMG2,PTPN2,RNMT,SEH1L,SLMO1,SPIRE1,TUBB6,ZNF519"
TCGA.AA.3941	18	12189735	13947892	529	-0.0033	NEUTRAL	NA	15	"AFG3L2,CEP192,CEP76,CIDEA,FAM210A,LDLRAD4,MC2R,MC5R,PSMG2,PTPN2,RNMT,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.AA.3982	18	12189735	13952634	531	-0.0027	NEUTRAL	NA	15	"AFG3L2,CEP192,CEP76,CIDEA,FAM210A,LDLRAD4,MC2R,MC5R,PSMG2,PTPN2,RNMT,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.F5.6811.01A	18	12244796	13428192	126	-0.3855	NEUTRAL	NA	11	"AFG3L2,CEP192,CEP76,CIDEA,LDLRAD4,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.AA.3655	18	12249701	12603431	81	-0.0255	NEUTRAL	NA	5	"AFG3L2,CIDEA,SLMO1,SPIRE1,TUBB6"
TCGA.G4.6626	18	12249701	78015056	20986	-0.416	NEUTRAL	NA	219	Too-Many
TCGA.AG.4009.01A	18	12277072	12691311	41	-0.4819	NEUTRAL	NA	7	"AFG3L2,CEP76,CIDEA,PSMG2,SLMO1,SPIRE1,TUBB6"
TCGA.AG.3891.01A	18	12308644	12310905	2	0.3432	NEUTRAL	NA	1	TUBB6
TCGA.AG.3891.01A	18	12325044	12367263	14	-0.3308	NEUTRAL	NA	2	"AFG3L2,TUBB6"
TCGA.AA.A01Q.01A	18	12344082	21083536	248	0.1276	NEUTRAL	NA	29	"ABHD3,AFG3L2,ANKRD30B,C18orf8,CABLES1,CEP192,CEP76,CTAGE1,ESCO1,FAM210A,GATA6,GREB1L,LDLRAD4,MC2R,MC5R,MIB1,POTEC,PSMG2,PTPN2,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLMO1,SNRPD1,SPIRE1,TMEM241,ZNF519"
TCGA.AG.3891.01A	18	12370785	12427024	4	0.2614	NEUTRAL	NA	2	"AFG3L2,SLMO1"
TCGA.AG.3891.01A	18	12429287	12963142	45	-0.3209	NEUTRAL	NA	6	"CEP76,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1"
TCGA.AA.A010.01A	18	12485877	12657478	9	0.0304	NEUTRAL	NA	1	SPIRE1
TCGA.AG.4009.01A	18	12695215	12725387	12	-0.0087	NEUTRAL	NA	2	"CEP76,PSMG2"
TCGA.AA.3679	18	12697710	19351343	669	0.0098	NEUTRAL	NA	19	"ABHD3,ANKRD30B,CEP192,CEP76,ESCO1,FAM210A,GREB1L,LDLRAD4,MC2R,MC5R,MIB1,POTEC,PSMG2,PTPN2,RNMT,ROCK1,SEH1L,SNRPD1,ZNF519"
TCGA.DY.A1DF	18	12728656	12729155	2	-0.2016	NEUTRAL	NA	0	None
TCGA.A6.5664	18	12750376	48616655	9956	-0.0123	NEUTRAL	NA	120	Too-Many
TCGA.CK.5914.01A	18	12794236	12948074	10	0.0331	NEUTRAL	NA	2	"PTPN2,SEH1L"
TCGA.AG.A01W.01A	18	12815763	18249494	233	-0.2484	NEUTRAL	NA	11	"ANKRD30B,CEP192,FAM210A,LDLRAD4,MC2R,MC5R,POTEC,PTPN2,RNMT,SEH1L,ZNF519"
TCGA.AG.3891.01A	18	12971125	12983992	4	0.2181	NEUTRAL	NA	1	SEH1L
TCGA.AA.A010.01A	18	13029635	14184036	60	0.3398	NEUTRAL	NA	7	"CEP192,FAM210A,LDLRAD4,MC2R,MC5R,RNMT,ZNF519"
TCGA.AG.3909.01A	18	13030425	13072961	15	0.0164	NEUTRAL	NA	1	CEP192
TCGA.AF.3914.01A	18	13030425	18690726	115	0.074	NEUTRAL	NA	10	"ANKRD30B,CEP192,FAM210A,LDLRAD4,MC2R,MC5R,POTEC,RNMT,ROCK1,ZNF519"
TCGA.AG.4009.01A	18	13030425	20572674	174	-0.3688	NEUTRAL	NA	18	"ABHD3,ANKRD30B,CEP192,CTAGE1,ESCO1,FAM210A,GATA6,GREB1L,LDLRAD4,MC2R,MC5R,MIB1,POTEC,RBBP8,RNMT,ROCK1,SNRPD1,ZNF519"
TCGA.CK.5914.01A	18	13052867	13068810	6	-0.1161	NEUTRAL	NA	1	CEP192
TCGA.AA.A00N.01A	18	13069685	13072961	4	-0.3919	NEUTRAL	NA	1	CEP192
TCGA.AG.A016.01A	18	13072961	13103447	10	0.3423	NEUTRAL	NA	1	CEP192
TCGA.AG.A00C.01A	18	13086989	13387655	16	-0.1732	NEUTRAL	NA	2	"CEP192,LDLRAD4"
TCGA.AG.A016.01A	18	13104929	13671814	13	-0.0772	NEUTRAL	NA	3	"CEP192,FAM210A,LDLRAD4"
TCGA.DT.5265	18	13246167	14710841	418	0.0174	NEUTRAL	NA	7	"FAM210A,LDLRAD4,MC2R,MC5R,POTEC,RNMT,ZNF519"
TCGA.AU.3779	18	13377127	15079293	418	-0.3809	NEUTRAL	NA	8	"ANKRD30B,FAM210A,LDLRAD4,MC2R,MC5R,POTEC,RNMT,ZNF519"
TCGA.AA.A00N.01A	18	13438192	13681557	8	-0.0906	NEUTRAL	NA	2	"FAM210A,LDLRAD4"
TCGA.G4.6314	18	13467274	33853627	4829	-0.3299	NEUTRAL	NA	69	"ABHD3,ANKRD29,ANKRD30B,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FAM210A,GALNT1,GAREM,GATA6,GREB1L,HRH4,IMPACT,INO80C,KCTD1,KLHL14,LAMA3,LDLRAD4,MAPRE2,MC2R,MC5R,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,POTEC,PSMA8,RBBP8,RIOK3,RNF125,RNF138,RNMT,ROCK1,RPRD1A,SLC25A52,SLC39A6,SNRPD1,SS18,TAF4B,TMEM241,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF519,ZNF521,ZSCAN30"
TCGA.D5.6929	18	13504077	13611532	75	0.3741	NEUTRAL	NA	1	LDLRAD4
TCGA.AG.3885	18	13564166	13572219	6	-0.19	NEUTRAL	NA	1	LDLRAD4
TCGA.CM.6679	18	13584638	77984344	20508	-0.38015	NEUTRAL	NA	209	Too-Many
TCGA.F5.6811.01A	18	13602647	14841521	62	0.2741	NEUTRAL	NA	8	"ANKRD30B,FAM210A,LDLRAD4,MC2R,MC5R,POTEC,RNMT,ZNF519"
TCGA.D5.6929	18	13617046	19455003	370	0.0332	NEUTRAL	NA	14	"ABHD3,ANKRD30B,ESCO1,FAM210A,GREB1L,LDLRAD4,MC2R,MC5R,MIB1,POTEC,RNMT,ROCK1,SNRPD1,ZNF519"
TCGA.CK.5914.01A	18	13621062	13681557	6	-0.3625	NEUTRAL	NA	2	"FAM210A,LDLRAD4"
TCGA.F4.6461	18	13626100	31196140	4031	-0.4653	NEUTRAL	NA	55	"ABHD3,ANKRD29,ANKRD30B,AQP4,ASXL3,B4GALT6,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,ESCO1,FAM210A,GAREM,GATA6,GREB1L,HRH4,IMPACT,KCTD1,KLHL14,LAMA3,LDLRAD4,MC2R,MC5R,MEP1B,MIB1,NPC1,OSBPL1A,POTEC,PSMA8,RBBP8,RIOK3,RNF125,RNF138,RNMT,ROCK1,SLC25A52,SNRPD1,SS18,TAF4B,TMEM241,TRAPPC8,TTC39C,TTR,ZNF519,ZNF521"
TCGA.AG.3611.01A	18	13666427	19263805	68	0.0535	NEUTRAL	NA	12	"ABHD3,ANKRD30B,ESCO1,FAM210A,GREB1L,MC2R,MC5R,POTEC,RNMT,ROCK1,SNRPD1,ZNF519"
TCGA.AG.A016.01A	18	13681557	14851521	46	-0.4538	NEUTRAL	NA	7	"ANKRD30B,FAM210A,MC2R,MC5R,POTEC,RNMT,ZNF519"
TCGA.AA.A00N.01A	18	13746172	14179496	10	-0.1773	NEUTRAL	NA	4	"MC2R,MC5R,RNMT,ZNF519"
TCGA.QG.A5YX	18	13782866	19403435	318	0.015	NEUTRAL	NA	11	"ABHD3,ANKRD30B,ESCO1,GREB1L,MC2R,MC5R,MIB1,POTEC,ROCK1,SNRPD1,ZNF519"
TCGA.AA.3850	18	13952634	15215870	161	-0.23735	NEUTRAL	NA	3	"ANKRD30B,POTEC,ZNF519"
TCGA.AA.3982	18	13957550	15106726	154	-0.5021	NEUTRAL	NA	3	"ANKRD30B,POTEC,ZNF519"
TCGA.CK.5914.01A	18	14104869	19088052	98	-0.4824	NEUTRAL	NA	5	"ANKRD30B,GREB1L,POTEC,ROCK1,ZNF519"
TCGA.AA.3488	18	14355172	74881659	19285	-0.5099	NEUTRAL	NA	191	Too-Many
TCGA.DY.A1DF	18	14368810	14753434	38	0.26	NEUTRAL	NA	2	"ANKRD30B,POTEC"
TCGA.AA.3495	18	14462809	19403435	144	0.0731	NEUTRAL	NA	8	"ABHD3,ANKRD30B,ESCO1,GREB1L,MIB1,POTEC,ROCK1,SNRPD1"
TCGA.AG.3906.01A	18	14511844	14542578	7	-0.252	NEUTRAL	NA	1	POTEC
TCGA.AZ.4684.01A	18	14522254	14828226	27	0.3022	NEUTRAL	NA	2	"ANKRD30B,POTEC"
TCGA.AG.3885	18	14746504	19226167	100	0.1784	NEUTRAL	NA	5	"ANKRD30B,ESCO1,GREB1L,ROCK1,SNRPD1"
TCGA.AA.A010.01A	18	14748378	28622495	466	0.2444	NEUTRAL	NA	31	"ABHD3,ANKRD29,ANKRD30B,AQP4,C18orf8,CABLES1,CABYR,CDH2,CHST9,CTAGE1,DSC3,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.AA.A00N.01A	18	14772120	20979484	179	0.2457	NEUTRAL	NA	12	"ABHD3,ANKRD30B,CABLES1,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,RBBP8,ROCK1,SNRPD1,TMEM241"
TCGA.AG.3909.01A	18	14782483	21141306	189	-0.0987	NEUTRAL	NA	15	"ABHD3,ANKRD30B,C18orf8,CABLES1,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,NPC1,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241"
TCGA.AG.A01Y	18	14920038	19226167	85	0.0831	NEUTRAL	NA	4	"ESCO1,GREB1L,ROCK1,SNRPD1"
TCGA.AF.6136	18	14920038	25955509	2206	0.1979	NEUTRAL	NA	29	"ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CDH2,CHST9,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.DT.5265	18	14940732	24977528	1891	0.0762	NEUTRAL	NA	28	"ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CHST9,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.D5.6926	18	14960408	78015056	20260	-0.502	NEUTRAL	NA	201	Too-Many
TCGA.EI.7004	18	15008484	22692488	1144	0.0364	NEUTRAL	NA	22	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,LAMA3,MIB1,NPC1,OSBPL1A,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241,TTC39C,ZNF521"
TCGA.A6.2675	18	15075993	61308294	13774	-0.3008	NEUTRAL	NA	155	Too-Many
TCGA.DM.A1D7	18	15093590	23534767	1434	-0.4001	NEUTRAL	NA	22	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,LAMA3,MIB1,NPC1,OSBPL1A,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241,TTC39C,ZNF521"
TCGA.A6.6652	18	15158340	78015056	20293	-0.0025	NEUTRAL	NA	201	Too-Many
TCGA.AD.6901	18	15158340	78015056	20228	-0.2951	NEUTRAL	NA	201	Too-Many
TCGA.AA.3982	18	15182453	20254063	324	-0.0588	NEUTRAL	NA	8	"ABHD3,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,ROCK1,SNRPD1"
TCGA.DM.A285	18	15182453	27202452	2494	-0.1137	NEUTRAL	NA	29	"ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CDH2,CHST9,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.F4.6463	18	15182453	78015056	20289	0.0029	NEUTRAL	NA	201	Too-Many
TCGA.AZ.4681	18	15215870	19730345	155	0.2863	NEUTRAL	NA	6	"ABHD3,ESCO1,GREB1L,MIB1,ROCK1,SNRPD1"
TCGA.DM.A28F	18	15215870	34668146	4718	-0.0008	NEUTRAL	NA	64	"ABHD3,ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FHOD3,GALNT1,GAREM,GATA6,GREB1L,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,RNF125,RNF138,ROCK1,RPRD1A,SLC25A52,SLC39A6,SNRPD1,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.F5.6811.01A	18	16785243	42751208	1060	-0.3438	NEUTRAL	NA	69	"ABHD3,ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FHOD3,GALNT1,GAREM,GATA6,GREB1L,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,PIK3C3,PSMA8,RBBP8,RIOK3,RIT2,RNF125,RNF138,ROCK1,RPRD1A,SETBP1,SLC25A52,SLC39A6,SNRPD1,SS18,SYT4,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AG.A036.01A	18	16785244	17493089	77	-0.1463	NEUTRAL	NA	0	None
TCGA.AZ.4684.01A	18	18531245	20945515	146	-0.5059	NEUTRAL	NA	11	"ABHD3,CABLES1,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,RBBP8,ROCK1,SNRPD1,TMEM241"
TCGA.AG.A016.01A	18	18531245	21033337	126	-0.1137	NEUTRAL	NA	12	"ABHD3,CABLES1,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241"
TCGA.AA.A004.01A	18	18531245	51692404	1177	-0.0303	NEUTRAL	NA	112	Too-Many
TCGA.AA.3861.01A	18	18540031	56414600	1508	-0.1561	NEUTRAL	NA	132	Too-Many
TCGA.AA.3862.01A	18	18540031	56414600	1514	-0.4019	NEUTRAL	NA	132	Too-Many
TCGA.AA.A00D.01A	18	18546831	18603535	16	-0.2577	NEUTRAL	NA	1	ROCK1
TCGA.CK.4948.01B	18	18559827	61471479	1751	-0.3205	NEUTRAL	NA	158	Too-Many
TCGA.AA.3666	18	18560353	19386520	72	0.1189	NEUTRAL	NA	6	"ABHD3,ESCO1,GREB1L,MIB1,ROCK1,SNRPD1"
TCGA.NH.A50U	18	18560353	19455003	82	0.2544	NEUTRAL	NA	6	"ABHD3,ESCO1,GREB1L,MIB1,ROCK1,SNRPD1"
TCGA.AA.3941	18	18560353	22111514	835	-0.0573	NEUTRAL	NA	21	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,LAMA3,MIB1,NPC1,OSBPL1A,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241,TTC39C"
TCGA.AG.3728	18	18560353	22636342	1119	0.0134	NEUTRAL	NA	21	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,LAMA3,MIB1,NPC1,OSBPL1A,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241,TTC39C"
TCGA.AZ.5407	18	18560353	24156424	1584	0.329	NEUTRAL	NA	26	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.CM.6676	18	18560353	25396489	2013	-0.314	NEUTRAL	NA	28	"ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CHST9,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.AF.6672	18	18560353	25596635	2084	0.2397	NEUTRAL	NA	29	"ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CDH2,CHST9,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.AZ.4614	18	18560353	35125313	4798	-0.0954	NEUTRAL	NA	65	"ABHD3,ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FHOD3,GALNT1,GAREM,GATA6,GREB1L,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,RNF125,RNF138,ROCK1,RPRD1A,SLC25A52,SLC39A6,SNRPD1,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.F4.6808	18	18560353	39572257	6266	0.0332	NEUTRAL	NA	66	"ABHD3,ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FHOD3,GALNT1,GAREM,GATA6,GREB1L,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,PIK3C3,PSMA8,RBBP8,RIOK3,RNF125,RNF138,ROCK1,RPRD1A,SLC25A52,SLC39A6,SNRPD1,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.CM.6675	18	18560353	43984042	7697	-0.1165	NEUTRAL	NA	78	"ABHD3,ANKRD29,AQP4,ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,EPG5,ESCO1,FHOD3,GALNT1,GAREM,GATA6,GREB1L,HAUS1,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,PIK3C3,PSMA8,PSTPIP2,RBBP8,RIOK3,RIT2,RNF125,RNF138,RNF165,ROCK1,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SNRPD1,SS18,SYT4,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.5M.AATE	18	18560353	77982106	20276	-0.1366	NEUTRAL	NA	201	Too-Many
TCGA.DM.A1D4	18	18594681	22561663	1080	0.003	NEUTRAL	NA	21	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,LAMA3,MIB1,NPC1,OSBPL1A,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241,TTC39C"
TCGA.AA.A00D.01A	18	18608709	21946817	224	0.1996	NEUTRAL	NA	19	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,ESCO1,GATA6,GREB1L,LAMA3,MIB1,NPC1,OSBPL1A,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241,TTC39C"
TCGA.EI.6508	18	18925349	18941898	4	0.1497	NEUTRAL	NA	1	GREB1L
TCGA.EI.6508	18	19058541	19578354	62	-0.0088	NEUTRAL	NA	5	"ABHD3,ESCO1,GREB1L,MIB1,SNRPD1"
TCGA.AA.A01S	18	19058541	21012819	451	0.01075	NEUTRAL	NA	10	"ABHD3,CABLES1,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,RBBP8,SNRPD1,TMEM241"
TCGA.CK.5914.01A	18	19088321	19144114	13	0.0653	NEUTRAL	NA	2	"ESCO1,GREB1L"
TCGA.AG.3891.01A	18	19110255	19282226	21	-0.01	NEUTRAL	NA	3	"ABHD3,ESCO1,SNRPD1"
TCGA.AG.3906.01A	18	19112395	19263805	19	-0.3388	NEUTRAL	NA	3	"ABHD3,ESCO1,SNRPD1"
TCGA.AU.3779	18	19156644	22276975	888	-0.3007	NEUTRAL	NA	19	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,ESCO1,GATA6,HRH4,IMPACT,LAMA3,MIB1,NPC1,OSBPL1A,RBBP8,RIOK3,SNRPD1,TMEM241,TTC39C"
TCGA.AG.3611.01A	18	19282226	78005105	1542	-0.3588	NEUTRAL	NA	197	Too-Many
TCGA.AG.3891.01A	18	19283533	21181141	126	-0.3444	NEUTRAL	NA	11	"ABHD3,ANKRD29,C18orf8,CABLES1,CTAGE1,GATA6,MIB1,NPC1,RBBP8,RIOK3,TMEM241"
TCGA.AA.3666	18	19403435	19511438	19	-0.4333	NEUTRAL	NA	1	MIB1
TCGA.AA.3495	18	19413818	78015056	20207	-0.4973	NEUTRAL	NA	196	Too-Many
TCGA.A6.3808.01A	18	19437041	21357455	128	-0.3455	NEUTRAL	NA	11	"ANKRD29,C18orf8,CABLES1,CTAGE1,GATA6,LAMA3,MIB1,NPC1,RBBP8,RIOK3,TMEM241"
TCGA.D5.6929	18	19462039	19699245	63	-0.3449	NEUTRAL	NA	0	None
TCGA.AA.3666	18	19568145	19679140	39	0.0357	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	18	19644301	19680230	18	-0.3056	NEUTRAL	NA	0	None
TCGA.AA.3664	18	19685113	20166749	158	0.3374	NEUTRAL	NA	2	"CTAGE1,GATA6"
TCGA.D5.6929	18	19704035	21825410	576	0.1425	NEUTRAL	NA	13	"ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,GATA6,LAMA3,NPC1,OSBPL1A,RBBP8,RIOK3,TMEM241,TTC39C"
TCGA.NH.A50V	18	19712387	22687149	975	0.2345	NEUTRAL	NA	16	"ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,GATA6,HRH4,IMPACT,LAMA3,NPC1,OSBPL1A,RBBP8,RIOK3,TMEM241,TTC39C,ZNF521"
TCGA.AG.A01W.01A	18	19733250	19743088	8	-0.4148	NEUTRAL	NA	0	None
TCGA.AG.A008.01A	18	19751059	19762682	3	-0.0215	NEUTRAL	NA	1	GATA6
TCGA.A6.6138	18	19766958	20147926	139	-0.5046	NEUTRAL	NA	2	"CTAGE1,GATA6"
TCGA.EI.6508	18	19816890	22077128	652	0.022	NEUTRAL	NA	14	"ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,HRH4,IMPACT,LAMA3,NPC1,OSBPL1A,RBBP8,RIOK3,TMEM241,TTC39C"
TCGA.QG.A5YX	18	19953906	20566383	174	0.0342	NEUTRAL	NA	2	"CTAGE1,RBBP8"
TCGA.AA.3850	18	19958207	20490086	167	-0.04255	NEUTRAL	NA	1	CTAGE1
TCGA.A6.6138	18	20159590	36614380	5111	0.0054	NEUTRAL	NA	57	"ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.3664	18	20168177	20911591	174	0.108	NEUTRAL	NA	3	"CABLES1,RBBP8,TMEM241"
TCGA.A6.6649	18	20253376	20264276	16	0.3135	NEUTRAL	NA	0	None
TCGA.AA.3982	18	20261885	20382352	32	-0.1041	NEUTRAL	NA	0	None
TCGA.AA.3982	18	20451029	22110886	463	-0.0082	NEUTRAL	NA	13	"ANKRD29,C18orf8,CABLES1,CABYR,HRH4,IMPACT,LAMA3,NPC1,OSBPL1A,RBBP8,RIOK3,TMEM241,TTC39C"
TCGA.AG.4009.01A	18	20573636	21033337	34	-0.0825	NEUTRAL	NA	4	"CABLES1,RBBP8,RIOK3,TMEM241"
TCGA.AG.3906.01A	18	20596748	21229000	87	-0.2832	NEUTRAL	NA	7	"ANKRD29,C18orf8,CABLES1,NPC1,RBBP8,RIOK3,TMEM241"
TCGA.AA.3870	18	20601507	20644442	9	-0.1662	NEUTRAL	NA	1	RBBP8
TCGA.A6.6649	18	20626435	78015056	19896	0.0265	NEUTRAL	NA	192	Too-Many
TCGA.D5.6927	18	20638047	78015056	19845	-0.0092	NEUTRAL	NA	192	Too-Many
TCGA.A6.5661	18	20904405	42669586	6715	0.0637	NEUTRAL	NA	59	"ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABYR,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PIK3C3,PSMA8,RIOK3,RIT2,RNF125,RNF138,RPRD1A,SETBP1,SLC25A52,SLC39A6,SS18,SYT4,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AG.A01W.01A	18	20923379	21967880	25	-0.1628	NEUTRAL	NA	9	"ANKRD29,C18orf8,CABYR,LAMA3,NPC1,OSBPL1A,RIOK3,TMEM241,TTC39C"
TCGA.AF.3914.01A	18	20945515	21464681	112	-0.0106	NEUTRAL	NA	6	"ANKRD29,C18orf8,LAMA3,NPC1,RIOK3,TMEM241"
TCGA.AA.A00N.01A	18	21001272	21083536	15	-0.4321	NEUTRAL	NA	3	"C18orf8,RIOK3,TMEM241"
TCGA.AG.4009.01A	18	21042911	21061085	10	-0.4148	NEUTRAL	NA	1	RIOK3
TCGA.AA.A01Q.01A	18	21084276	21113270	18	-0.3434	NEUTRAL	NA	2	"C18orf8,NPC1"
TCGA.AG.A016.01A	18	21084276	21427440	78	-0.063	NEUTRAL	NA	4	"ANKRD29,C18orf8,LAMA3,NPC1"
TCGA.AA.A00N.01A	18	21095773	21141306	33	-0.058	NEUTRAL	NA	2	"C18orf8,NPC1"
TCGA.AG.4009.01A	18	21100116	43405630	699	-0.3489	NEUTRAL	NA	60	"ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABYR,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PIK3C3,PSMA8,RIT2,RNF125,RNF138,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SS18,SYT4,TAF4B,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.A01Q.01A	18	21114368	21422327	33	-0.0113	NEUTRAL	NA	3	"ANKRD29,LAMA3,NPC1"
TCGA.AA.A02H.01A	18	21123371	77960563	1750	-0.2866	NEUTRAL	NA	188	Too-Many
TCGA.AA.A00N.01A	18	21199443	21333642	12	-0.2783	NEUTRAL	NA	2	"ANKRD29,LAMA3"
TCGA.AG.3891.01A	18	21213967	21357455	14	-0.3617	NEUTRAL	NA	2	"ANKRD29,LAMA3"
TCGA.AA.A00L.01A	18	21226104	21451358	8	-0.1153	NEUTRAL	NA	2	"ANKRD29,LAMA3"
TCGA.AG.3909.01A	18	21353420	21413741	16	0.1136	NEUTRAL	NA	1	LAMA3
TCGA.CK.5914.01A	18	21363937	21705394	71	-0.0969	NEUTRAL	NA	2	"LAMA3,TTC39C"
TCGA.A6.3808.01A	18	21363937	23598234	127	0.2767	NEUTRAL	NA	8	"CABYR,HRH4,IMPACT,LAMA3,OSBPL1A,SS18,TTC39C,ZNF521"
TCGA.G4.6322	18	21402297	47402487	8299	-0.0022	NEUTRAL	NA	85	"ACAA2,AQP4,ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,C18orf32,CABYR,CCDC178,CDH2,CELF4,CHST9,CTIF,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,DYM,ELP2,EPG5,FHOD3,GALNT1,GAREM,HAUS1,HDHD2,HRH4,IER3IP1,IMPACT,INO80C,KATNAL2,KCTD1,KIAA1328,KLHL14,LAMA3,LIPG,LOXHD1,MAPRE2,MEP1B,MOCOS,MYO5B,NOL4,OSBPL1A,PIAS2,PIK3C3,PSMA8,PSTPIP2,RIT2,RNF125,RNF138,RNF165,RPL17,RPL17-C18orf32,RPRD1A,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SMAD2,SMAD7,SS18,ST8SIA5,SYT4,TAF4B,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TPGS2,TRAPPC8,TTC39C,TTR,ZBTB7C,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AG.3909.01A	18	21426213	21705394	52	0.1218	NEUTRAL	NA	2	"LAMA3,TTC39C"
TCGA.AG.A016.01A	18	21437759	21479210	15	-0.421	NEUTRAL	NA	1	LAMA3
TCGA.AG.3891.01A	18	21437759	22020452	89	-0.3099	NEUTRAL	NA	5	"CABYR,IMPACT,LAMA3,OSBPL1A,TTC39C"
TCGA.AA.A01Q.01A	18	21478665	30554484	302	0.103	NEUTRAL	NA	31	"AQP4,B4GALT6,CABYR,CCDC178,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,HRH4,IMPACT,KCTD1,KLHL14,LAMA3,MEP1B,OSBPL1A,PSMA8,RNF125,RNF138,SLC25A52,SS18,TAF4B,TRAPPC8,TTC39C,TTR,ZNF521"
TCGA.AG.A016.01A	18	21481043	23619206	95	-0.0817	NEUTRAL	NA	8	"CABYR,HRH4,IMPACT,LAMA3,OSBPL1A,SS18,TTC39C,ZNF521"
TCGA.AG.A00C.01A	18	21710228	22025296	40	-0.3837	NEUTRAL	NA	4	"CABYR,IMPACT,OSBPL1A,TTC39C"
TCGA.AG.3909.01A	18	21744976	21921474	22	-0.0556	NEUTRAL	NA	1	OSBPL1A
TCGA.AA.A00N.01A	18	21747244	21921474	20	0.0597	NEUTRAL	NA	1	OSBPL1A
TCGA.D5.6929	18	21828098	28872652	2313	-0.3889	NEUTRAL	NA	14	"AQP4,CDH2,CHST9,DSC1,DSC2,DSC3,HRH4,IMPACT,KCTD1,OSBPL1A,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AG.3909.01A	18	22020452	24126675	51	-0.1929	NEUTRAL	NA	7	"HRH4,IMPACT,KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.CK.5914.01A	18	22028006	23969776	45	-0.2198	NEUTRAL	NA	6	"HRH4,IMPACT,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AA.3509.01A	18	22028006	33283423	372	-0.3967	NEUTRAL	NA	37	"AQP4,ASXL3,B4GALT6,CCDC178,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KLHL14,MAPRE2,MEP1B,NOL4,PSMA8,RNF125,RNF138,SLC25A52,SS18,TAF4B,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.A00D.01A	18	22040643	29797683	206	0.061	NEUTRAL	NA	23	"AQP4,B4GALT6,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,HRH4,KCTD1,MEP1B,PSMA8,RNF125,RNF138,SLC25A52,SS18,TAF4B,TRAPPC8,TTR,ZNF521"
TCGA.AA.A00L.01A	18	22048744	23713881	22	0.1425	NEUTRAL	NA	4	"HRH4,PSMA8,SS18,ZNF521"
TCGA.AA.3982	18	22111514	22209158	65	-0.2409	NEUTRAL	NA	0	None
TCGA.AA.3850	18	22112343	24423004	862	-0.04125	NEUTRAL	NA	5	"KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AA.3941	18	22112343	24445846	870	-0.4793	NEUTRAL	NA	6	"AQP4,KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.EI.6508	18	22152235	27760597	1794	-0.0116	NEUTRAL	NA	8	"AQP4,CDH2,CHST9,KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AA.3982	18	22212189	22227545	5	0.2637	NEUTRAL	NA	0	None
TCGA.AA.3982	18	22229493	25046874	984	-0.3441	NEUTRAL	NA	7	"AQP4,CHST9,KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AU.3779	18	22282713	24185132	651	0.0408	NEUTRAL	NA	5	"KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AG.3728	18	22643153	23285802	203	-0.3648	NEUTRAL	NA	1	ZNF521
TCGA.AA.3930.01A	18	22669389	23713881	19	-0.3813	NEUTRAL	NA	3	"PSMA8,SS18,ZNF521"
TCGA.AA.A00K.01A	18	22669389	43671617	499	-0.3283	NEUTRAL	NA	54	"AQP4,ASXL3,ATP5A1,B4GALT6,C18orf21,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,EPG5,FHOD3,GALNT1,GAREM,INO80C,KCTD1,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,PIK3C3,PSMA8,PSTPIP2,RIT2,RNF125,RNF138,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SS18,SYT4,TAF4B,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AG.A00Y.01A	18	22671885	33726165	391	-0.2669	NEUTRAL	NA	39	"AQP4,ASXL3,B4GALT6,C18orf21,CCDC178,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,GALNT1,GAREM,INO80C,KCTD1,KLHL14,MAPRE2,MEP1B,NOL4,PSMA8,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.EI.7004	18	22696064	67207851	14735	-0.3686	NEUTRAL	NA	147	Too-Many
TCGA.AG.3885	18	22916790	31190709	2575	-0.1412	NEUTRAL	NA	26	"AQP4,ASXL3,B4GALT6,CCDC178,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,KCTD1,KLHL14,MEP1B,PSMA8,RNF125,RNF138,SLC25A52,SS18,TAF4B,TRAPPC8,TTR,ZNF521"
TCGA.DM.A1D4	18	22956217	23411162	172	-0.0078	NEUTRAL	NA	0	None
TCGA.AG.3728	18	23313348	24136916	245	-0.2559	NEUTRAL	NA	4	"KCTD1,PSMA8,SS18,TAF4B"
TCGA.G4.6311	18	23391989	78015056	18952	-0.3462	NEUTRAL	NA	179	Too-Many
TCGA.AZ.4684.01A	18	23612321	23670402	10	0.3073	NEUTRAL	NA	1	SS18
TCGA.A6.3808.01A	18	23632567	43652040	595	0.2993	NEUTRAL	NA	52	"AQP4,ASXL3,B4GALT6,C18orf21,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,EPG5,FHOD3,GALNT1,GAREM,INO80C,KCTD1,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,PIK3C3,PSMA8,PSTPIP2,RIT2,RNF125,RNF138,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SS18,SYT4,TAF4B,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AZ.4684.01A	18	23713881	24126675	25	-0.4423	NEUTRAL	NA	3	"KCTD1,PSMA8,TAF4B"
TCGA.AA.3930.01A	18	23724483	30825170	249	-0.0723	NEUTRAL	NA	23	"AQP4,B4GALT6,CCDC178,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,KCTD1,KLHL14,MEP1B,PSMA8,RNF125,RNF138,SLC25A52,TAF4B,TRAPPC8,TTR"
TCGA.AG.3890	18	23781509	78015056	18742	-0.3363	NEUTRAL	NA	177	Too-Many
TCGA.D5.6922	18	23970716	28197517	1318	0.2493	NEUTRAL	NA	5	"AQP4,CDH2,CHST9,KCTD1,TAF4B"
TCGA.AZ.5407	18	24164819	25260022	377	0.187	NEUTRAL	NA	3	"AQP4,CHST9,KCTD1"
TCGA.AU.3779	18	24192714	38334178	4282	-0.2649	NEUTRAL	NA	40	"AQP4,ASXL3,B4GALT6,C18orf21,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KCTD1,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AF.3911	18	24355158	26455756	656	-0.4843	NEUTRAL	NA	3	"AQP4,CDH2,CHST9"
TCGA.AZ.4684.01A	18	24436165	29052618	118	0.0669	NEUTRAL	NA	9	"AQP4,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG3,DSG4"
TCGA.AA.A00N.01A	18	24496173	24628362	4	0.1185	NEUTRAL	NA	1	CHST9
TCGA.AG.3909.01A	18	24496173	25727589	21	0.0903	NEUTRAL	NA	2	"CDH2,CHST9"
TCGA.CK.5914.01A	18	24496173	28719980	60	-0.2367	NEUTRAL	NA	5	"CDH2,CHST9,DSC1,DSC2,DSC3"
TCGA.AA.3811	18	24585435	28608793	1191	-0.2485	NEUTRAL	NA	3	"CDH2,CHST9,DSC3"
TCGA.AY.4070	18	24841281	78015056	18377	-0.3741	NEUTRAL	NA	173	Too-Many
TCGA.D5.6898	18	25245148	25697511	164	-0.1591	NEUTRAL	NA	1	CDH2
TCGA.AZ.5407	18	25273372	31320228	1836	0.2972	NEUTRAL	NA	19	"ASXL3,B4GALT6,CCDC178,CDH2,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,KLHL14,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.DT.5265	18	25392901	35636826	3020	0.0886	NEUTRAL	NA	37	"ASXL3,B4GALT6,C18orf21,CCDC178,CDH2,CELF4,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AF.3914.01A	18	25532115	44470496	600	-0.4272	NEUTRAL	NA	53	"ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,CCDC178,CDH2,CELF4,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,EPG5,FHOD3,GALNT1,GAREM,HAUS1,INO80C,KIAA1328,KLHL14,LOXHD1,MAPRE2,MEP1B,MOCOS,NOL4,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF125,RNF138,RNF165,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC25A52,SLC39A6,ST8SIA5,SYT4,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.G5.6641	18	25834893	30474275	1464	-0.0302	NEUTRAL	NA	16	"B4GALT6,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,KLHL14,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.NH.A50V	18	25949732	26997912	273	0.2676	NEUTRAL	NA	0	None
TCGA.CM.6676	18	25953902	78015056	18050	-0.3323	NEUTRAL	NA	172	Too-Many
TCGA.AA.3833	18	26196850	30886677	1442	0.0421	NEUTRAL	NA	17	"B4GALT6,CCDC178,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,KLHL14,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.A6.2686	18	26257521	78015056	18006	-0.3719	NEUTRAL	NA	172	Too-Many
TCGA.AA.3851	18	26257865	34276581	2393	-0.4513	NEUTRAL	NA	33	"ASXL3,B4GALT6,C18orf21,CCDC178,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.D5.6541	18	26556618	78015056	17963	-0.4744	NEUTRAL	NA	172	Too-Many
TCGA.CL.4957	18	26590845	28986332	748	-0.3724	NEUTRAL	NA	5	"DSC1,DSC2,DSC3,DSG1,DSG4"
TCGA.AG.A036.01A	18	26901933	27518247	103	-0.0564	NEUTRAL	NA	0	None
TCGA.D5.5539	18	26999886	34267996	2196	0.0167	NEUTRAL	NA	33	"ASXL3,B4GALT6,C18orf21,CCDC178,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.NH.A50V	18	27009555	27209020	53	0.371	NEUTRAL	NA	0	None
TCGA.DM.A288	18	27377785	33072957	1652	0.0717	NEUTRAL	NA	26	"ASXL3,B4GALT6,CCDC178,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,GAREM,INO80C,KLHL14,MAPRE2,MEP1B,NOL4,RNF125,RNF138,SLC25A52,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AF.2690	18	27530706	45677300	5688	-0.2776	NEUTRAL	NA	62	"ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,CCDC178,CELF4,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,EPG5,FHOD3,GALNT1,GAREM,HAUS1,HDHD2,IER3IP1,INO80C,KATNAL2,KIAA1328,KLHL14,LOXHD1,MAPRE2,MEP1B,MOCOS,NOL4,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF125,RNF138,RNF165,RPRD1A,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SMAD2,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TPGS2,TRAPPC8,TTR,ZBTB7C,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.A6.6648	18	27634475	42289600	4420	-0.2912	NEUTRAL	NA	40	"ASXL3,B4GALT6,C18orf21,CCDC178,CELF4,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,PIK3C3,RIT2,RNF125,RNF138,RPRD1A,SETBP1,SLC25A52,SLC39A6,SYT4,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3681	18	27833549	27862638	7	-0.0237	NEUTRAL	NA	0	None
TCGA.AG.3594	18	27920243	28896039	350	0.0344	NEUTRAL	NA	3	"DSC1,DSC2,DSC3"
TCGA.G4.6306	18	28317864	31832630	1050	0.0827	NEUTRAL	NA	19	"ASXL3,B4GALT6,CCDC178,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,KLHL14,MEP1B,NOL4,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.CM.6677	18	28333702	30354196	718	-0.266	NEUTRAL	NA	16	"B4GALT6,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,KLHL14,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.AA.A00N.01A	18	28574092	28584089	4	0.2744	NEUTRAL	NA	1	DSC3
TCGA.AA.A00N.01A	18	28586876	28713807	31	-0.4157	NEUTRAL	NA	3	"DSC1,DSC2,DSC3"
TCGA.AA.3982	18	28610505	30189414	552	-0.2069	NEUTRAL	NA	15	"B4GALT6,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,GAREM,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.AA.3811	18	28627851	28940033	112	-0.0391	NEUTRAL	NA	3	"DSC1,DSC2,DSG1"
TCGA.AA.A010.01A	18	28681800	29027763	49	0.2746	NEUTRAL	NA	5	"DSC1,DSC2,DSG1,DSG3,DSG4"
TCGA.AG.A016.01A	18	28710429	29055658	63	-0.2505	NEUTRAL	NA	4	"DSC1,DSG1,DSG3,DSG4"
TCGA.AG.3591	18	28783687	31175147	743	-0.1944	NEUTRAL	NA	15	"ASXL3,B4GALT6,CCDC178,DSG1,DSG2,DSG3,DSG4,GAREM,KLHL14,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.D5.6929	18	28881800	33752889	1368	0.0394	NEUTRAL	NA	28	"ASXL3,B4GALT6,C18orf21,CCDC178,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,GALNT1,GAREM,INO80C,KLHL14,MAPRE2,MEP1B,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.CK.5914.01A	18	28898201	29470651	92	-0.3503	NEUTRAL	NA	8	"B4GALT6,DSG1,DSG2,DSG3,DSG4,SLC25A52,TRAPPC8,TTR"
TCGA.AA.3864	18	28918627	28940033	10	-0.5061	NEUTRAL	NA	1	DSG1
TCGA.AA.3811	18	28943791	30161360	419	0.3008	NEUTRAL	NA	11	"B4GALT6,DSG2,DSG3,DSG4,GAREM,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.AA.3864	18	28943791	35330842	1864	0.0198	NEUTRAL	NA	32	"ASXL3,B4GALT6,C18orf21,CCDC178,CELF4,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3850	18	28986332	29158160	79	0.27615	NEUTRAL	NA	3	"DSG2,DSG3,DSG4"
TCGA.AA.3941	18	28986332	29972396	330	-0.1337	NEUTRAL	NA	11	"B4GALT6,DSG2,DSG3,DSG4,GAREM,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.CL.4957	18	28988467	30249432	432	-0.0148	NEUTRAL	NA	11	"B4GALT6,DSG2,DSG3,DSG4,GAREM,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.AA.A010.01A	18	29041139	29225266	32	0.2999	NEUTRAL	NA	4	"B4GALT6,DSG2,DSG3,TTR"
TCGA.AZ.4684.01A	18	29054037	30349587	98	-0.4691	NEUTRAL	NA	11	"B4GALT6,DSG2,DSG3,GAREM,KLHL14,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.AA.3850	18	29164439	29757132	166	0.31605	NEUTRAL	NA	6	"B4GALT6,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.AA.A00N.01A	18	29206228	29339799	9	-0.374	NEUTRAL	NA	2	"B4GALT6,SLC25A52"
TCGA.AA.A00N.01A	18	29497485	29782834	21	-0.3528	NEUTRAL	NA	4	"MEP1B,RNF125,RNF138,TRAPPC8"
TCGA.AG.3728	18	29665862	30752832	338	-0.1897	NEUTRAL	NA	5	"CCDC178,GAREM,KLHL14,MEP1B,RNF138"
TCGA.CK.5914.01A	18	29797683	32720210	94	-0.2435	NEUTRAL	NA	8	"ASXL3,CCDC178,DTNA,GAREM,KLHL14,MAPRE2,MEP1B,NOL4"
TCGA.AA.3850	18	29797920	29957235	61	0.25925	NEUTRAL	NA	2	"GAREM,MEP1B"
TCGA.AA.A00D.01A	18	29847787	32706864	71	-0.2182	NEUTRAL	NA	7	"ASXL3,CCDC178,DTNA,GAREM,KLHL14,MAPRE2,NOL4"
TCGA.AA.A01C.01A	18	29847787	53131241	691	-0.2696	NEUTRAL	NA	76	"ACAA2,ASXL3,ATP5A1,C18orf21,C18orf25,C18orf32,C18orf54,CCDC178,CCDC68,CELF4,CFAP53,CTIF,CXXC1,DCC,DTNA,DYM,DYNAP,ELAC1,ELP2,EPG5,FHOD3,GALNT1,GAREM,HAUS1,HDHD2,IER3IP1,INO80C,KATNAL2,KIAA1328,KLHL14,LIPG,LOXHD1,MAPK4,MAPRE2,MBD1,MBD2,ME2,MEX3C,MOCOS,MRO,MYO5B,NOL4,PIAS2,PIK3C3,POLI,PSTPIP2,RAB27B,RIT2,RNF165,RPL17,RPL17-C18orf32,RPRD1A,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SLC39A6,SMAD2,SMAD4,SMAD7,ST8SIA5,STARD6,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TPGS2,ZBTB7C,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3850	18	29963112	30664429	218	-0.22875	NEUTRAL	NA	3	"CCDC178,GAREM,KLHL14"
TCGA.AA.A010.01A	18	29972810	32825198	90	0.0039	NEUTRAL	NA	8	"ASXL3,CCDC178,DTNA,GAREM,KLHL14,MAPRE2,NOL4,ZNF397"
TCGA.AA.3811	18	30161689	32153479	462	-0.1819	NEUTRAL	NA	5	"ASXL3,CCDC178,DTNA,KLHL14,NOL4"
TCGA.CL.4957	18	30251410	31107758	214	-0.3628	NEUTRAL	NA	2	"CCDC178,KLHL14"
TCGA.A6.6653	18	30304065	37365728	2014	0.1263	NEUTRAL	NA	21	"ASXL3,C18orf21,CCDC178,CELF4,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,KLHL14,MAPRE2,MOCOS,NOL4,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.G4.6302	18	30447887	78015056	16692	-0.0039	NEUTRAL	NA	156	Too-Many
TCGA.AZ.4684.01A	18	30517919	32418674	53	0.1605	NEUTRAL	NA	4	"ASXL3,CCDC178,DTNA,NOL4"
TCGA.AA.A01Q.01A	18	30672673	31673418	28	-0.2346	NEUTRAL	NA	3	"ASXL3,CCDC178,NOL4"
TCGA.AA.3930.01A	18	30846838	31241543	17	-0.4054	NEUTRAL	NA	2	"ASXL3,CCDC178"
TCGA.AA.3833	18	30895622	78015056	16622	-0.0023	NEUTRAL	NA	156	Too-Many
TCGA.DM.A1DA	18	30982867	78015056	16603	-0.1889	NEUTRAL	NA	156	Too-Many
TCGA.AY.4071	18	31142971	41974817	3201	-0.0102	NEUTRAL	NA	22	"ASXL3,C18orf21,CELF4,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,NOL4,PIK3C3,RIT2,RPRD1A,SLC39A6,SYT4,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AG.3885	18	31196140	36712398	1666	0.1403	NEUTRAL	NA	19	"ASXL3,C18orf21,CELF4,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,NOL4,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.F4.6461	18	31203622	34016868	769	0.013	NEUTRAL	NA	16	"ASXL3,C18orf21,DTNA,ELP2,FHOD3,GALNT1,INO80C,MAPRE2,MOCOS,NOL4,RPRD1A,SLC39A6,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.A01D.01A	18	31241543	77960563	1318	-0.3213	NEUTRAL	NA	155	Too-Many
TCGA.AA.3930.01A	18	31250590	47787387	566	-0.062	NEUTRAL	NA	55	"ACAA2,ASXL3,ATP5A1,C18orf21,C18orf25,C18orf32,CELF4,CFAP53,CTIF,DTNA,DYM,ELP2,EPG5,FHOD3,GALNT1,HAUS1,HDHD2,IER3IP1,INO80C,KATNAL2,KIAA1328,LIPG,LOXHD1,MAPRE2,MOCOS,MYO5B,NOL4,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,RPRD1A,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SLC39A6,SMAD2,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TPGS2,ZBTB7C,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AZ.5407	18	31321993	51201890	6563	-0.2176	NEUTRAL	NA	65	"ACAA2,ASXL3,ATP5A1,C18orf21,C18orf25,C18orf32,CELF4,CFAP53,CTIF,CXXC1,DCC,DTNA,DYM,ELAC1,ELP2,EPG5,FHOD3,GALNT1,HAUS1,HDHD2,IER3IP1,INO80C,KATNAL2,KIAA1328,LIPG,LOXHD1,MAPK4,MAPRE2,MBD1,ME2,MEX3C,MOCOS,MRO,MYO5B,NOL4,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,RPRD1A,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SLC39A6,SMAD2,SMAD4,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TPGS2,ZBTB7C,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.A01Q.01A	18	31683984	34646872	142	0.1128	NEUTRAL	NA	17	"C18orf21,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,NOL4,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.G5.6641	18	31769917	33612828	465	-0.1547	NEUTRAL	NA	11	"C18orf21,DTNA,GALNT1,INO80C,MAPRE2,NOL4,RPRD1A,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3982	18	32019371	32241896	70	-0.3758	NEUTRAL	NA	1	DTNA
TCGA.AA.3850	18	32126428	35687895	1110	0.04705	NEUTRAL	NA	17	"C18orf21,CELF4,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3811	18	32153518	35655354	1090	0.1761	NEUTRAL	NA	17	"C18orf21,CELF4,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3982	18	32287899	32687271	132	-0.4363	NEUTRAL	NA	2	"DTNA,MAPRE2"
TCGA.AZ.4684.01A	18	32428217	34322678	130	-0.4412	NEUTRAL	NA	14	"C18orf21,DTNA,ELP2,FHOD3,GALNT1,INO80C,MAPRE2,MOCOS,RPRD1A,SLC39A6,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AG.3728	18	32570498	35278402	834	-0.2581	NEUTRAL	NA	16	"C18orf21,CELF4,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3941	18	32693302	35213798	762	-0.2451	NEUTRAL	NA	16	"C18orf21,CELF4,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3982	18	32693302	35262005	784	-0.1599	NEUTRAL	NA	16	"C18orf21,CELF4,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.A00D.01A	18	32711949	40613704	156	0.0761	NEUTRAL	NA	18	"C18orf21,CELF4,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,PIK3C3,RIT2,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AG.A00C.01A	18	32822395	33077653	22	-0.4121	NEUTRAL	NA	5	"INO80C,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.NH.A50V	18	32861276	33469342	163	0.2305	NEUTRAL	NA	5	"GALNT1,INO80C,ZNF24,ZNF396,ZSCAN30"
TCGA.AA.A00N.01A	18	32886629	33647169	40	0.0775	NEUTRAL	NA	6	"C18orf21,GALNT1,INO80C,RPRD1A,ZNF24,ZNF396"
TCGA.CK.5914.01A	18	32886629	33696620	45	-0.4207	NEUTRAL	NA	7	"C18orf21,GALNT1,INO80C,RPRD1A,SLC39A6,ZNF24,ZNF396"
TCGA.AA.A010.01A	18	32888404	42643066	178	0.0665	NEUTRAL	NA	17	"C18orf21,CELF4,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MOCOS,PIK3C3,RIT2,RPRD1A,SETBP1,SLC39A6,SYT4,TPGS2,ZNF24,ZNF396"
TCGA.AG.A00C.01A	18	33552664	33775178	40	-0.3975	NEUTRAL	NA	5	"C18orf21,ELP2,MOCOS,RPRD1A,SLC39A6"
TCGA.AA.A02O	18	33564001	33825743	76	-0.4718	NEUTRAL	NA	4	"ELP2,MOCOS,RPRD1A,SLC39A6"
TCGA.G5.6641	18	33614281	41978624	2583	-0.5025	NEUTRAL	NA	11	"CELF4,ELP2,FHOD3,KIAA1328,MOCOS,PIK3C3,RIT2,RPRD1A,SLC39A6,SYT4,TPGS2"
TCGA.CK.5914.01A	18	33725880	33848479	26	-0.3363	NEUTRAL	NA	2	"ELP2,MOCOS"
TCGA.AG.A00Y.01A	18	33734805	35065433	72	0.1818	NEUTRAL	NA	6	"CELF4,ELP2,FHOD3,KIAA1328,MOCOS,TPGS2"
TCGA.D5.6929	18	33767748	34389672	272	-0.4395	NEUTRAL	NA	3	"FHOD3,MOCOS,TPGS2"
TCGA.AA.A02O	18	33835008	34077684	107	0.0446	NEUTRAL	NA	2	"FHOD3,MOCOS"
TCGA.CK.5914.01A	18	33877787	34298157	17	0.2369	NEUTRAL	NA	1	FHOD3
TCGA.AG.3894	18	33894618	78015056	15766	-0.0138	NEUTRAL	NA	140	Too-Many
TCGA.F4.6461	18	34021027	45311184	3657	-0.488	NEUTRAL	NA	28	"ATP5A1,C18orf25,CELF4,EPG5,FHOD3,HAUS1,HDHD2,IER3IP1,KATNAL2,KIAA1328,LOXHD1,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TPGS2"
TCGA.AA.A00N.01A	18	34310609	39576586	48	0.018	NEUTRAL	NA	5	"CELF4,FHOD3,KIAA1328,PIK3C3,TPGS2"
TCGA.AZ.4684.01A	18	34323948	40853526	67	-0.0801	NEUTRAL	NA	7	"CELF4,FHOD3,KIAA1328,PIK3C3,RIT2,SYT4,TPGS2"
TCGA.CK.5914.01A	18	34349188	34901729	28	-0.3763	NEUTRAL	NA	4	"CELF4,FHOD3,KIAA1328,TPGS2"
TCGA.D5.6929	18	34391102	37160126	830	0.0592	NEUTRAL	NA	3	"CELF4,KIAA1328,TPGS2"
TCGA.AA.3509.01A	18	34398799	40853526	56	-0.2602	NEUTRAL	NA	6	"CELF4,KIAA1328,PIK3C3,RIT2,SYT4,TPGS2"
TCGA.AA.A00L.01A	18	34408592	35145277	15	-0.0488	NEUTRAL	NA	3	"CELF4,KIAA1328,TPGS2"
TCGA.AG.A02G.01A	18	34839089	77960563	1167	-0.4671	NEUTRAL	NA	137	Too-Many
TCGA.AZ.4614	18	35126707	39448074	1357	0.2905	NEUTRAL	NA	1	CELF4
TCGA.AA.3982	18	35264194	35830153	190	-0.4516	NEUTRAL	NA	0	None
TCGA.AA.3864	18	35334768	42051775	2036	-0.2035	NEUTRAL	NA	3	"PIK3C3,RIT2,SYT4"
TCGA.AA.3977	18	35335645	57286765	7497	-0.0312	NEUTRAL	NA	74	"ACAA2,ALPK2,ATP5A1,ATP8B1,BOD1L2,C18orf25,C18orf32,C18orf54,CCBE1,CCDC68,CFAP53,CPLX4,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,EPG5,FECH,GRP,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LMAN1,LOC100505549,LOC101927322,LOXHD1,MALT1,MAPK4,MBD1,MBD2,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PIAS2,PIK3C3,POLI,PSTPIP2,RAB27B,RAX,RIT2,RNF165,RPL17,RPL17-C18orf32,SEC11C,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA3,ST8SIA5,STARD6,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TXNL1,WDR7,ZBTB7C,ZNF532"
TCGA.AA.A01S	18	35393277	35960925	181	0.00955	NEUTRAL	NA	0	None
TCGA.AA.3811	18	35657400	43095004	2380	-0.1848	NEUTRAL	NA	5	"PIK3C3,RIT2,SETBP1,SLC14A2,SYT4"
TCGA.DM.A288	18	36598771	36957554	90	0.0729	NEUTRAL	NA	0	None
TCGA.DT.5265	18	36885074	40038634	957	0.081	NEUTRAL	NA	1	PIK3C3
TCGA.DM.A288	18	36978348	37114683	29	-0.0178	NEUTRAL	NA	0	None
TCGA.DM.A28F	18	36997885	39791500	843	-0.0435	NEUTRAL	NA	1	PIK3C3
TCGA.D5.6929	18	37165304	41252020	1252	-0.406	NEUTRAL	NA	3	"PIK3C3,RIT2,SYT4"
TCGA.A6.6653	18	37396746	37776162	100	0.1326	NEUTRAL	NA	0	None
TCGA.A6.6653	18	37778617	47062757	3072	-0.1765	NEUTRAL	NA	32	"ATP5A1,C18orf25,C18orf32,CTIF,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.5M.AATA	18	38463588	65824780	9462	0	NEUTRAL	NA	100	"ACAA2,ALPK2,ATP5A1,ATP8B1,BCL2,BOD1L2,C18orf25,C18orf32,C18orf54,CCBE1,CCDC68,CDH19,CDH20,CDH7,CFAP53,CPLX4,CTIF,CXXC1,DCC,DSEL,DYM,DYNAP,ELAC1,EPG5,FECH,GRP,HAUS1,HDHD2,HMSD,IER3IP1,KATNAL2,KDSR,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,LOXHD1,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIAS2,PIGN,PIK3C3,PMAIP1,POLI,PSTPIP2,RAB27B,RAX,RIT2,RNF152,RNF165,RPL17,RPL17-C18orf32,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA3,ST8SIA5,STARD6,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZBTB7C,ZCCHC2,ZNF532"
TCGA.CA.5254	18	39003072	78015056	14159	-0.4729	NEUTRAL	NA	136	Too-Many
TCGA.AA.A01Q.01A	18	39535191	44126810	130	0.0396	NEUTRAL	NA	14	"ATP5A1,C18orf25,EPG5,HAUS1,LOXHD1,PIK3C3,PSTPIP2,RIT2,RNF165,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SYT4"
TCGA.AA.A00O.01A	18	39535191	77119312	1119	0.0142	NEUTRAL	NA	127	Too-Many
TCGA.AG.A016.01A	18	39537485	47808953	329	-0.126	NEUTRAL	NA	38	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MBD1,MYO5B,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.CK.5914.01A	18	39550243	39584318	7	0.2548	NEUTRAL	NA	1	PIK3C3
TCGA.DM.A288	18	39578276	42055271	715	0.0449	NEUTRAL	NA	3	"PIK3C3,RIT2,SYT4"
TCGA.CK.5914.01A	18	39593393	40323421	16	-0.3256	NEUTRAL	NA	2	"PIK3C3,RIT2"
TCGA.G4.6299	18	39796975	40453909	209	-0.0268	NEUTRAL	NA	1	RIT2
TCGA.DM.A28F	18	39898497	47917734	2772	-0.0337	NEUTRAL	NA	38	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MBD1,MYO5B,PIAS2,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.DT.5265	18	40183617	41812177	460	0.0999	NEUTRAL	NA	2	"RIT2,SYT4"
TCGA.AA.A00L.01A	18	40323421	43526582	52	0.1979	NEUTRAL	NA	7	"EPG5,RIT2,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SYT4"
TCGA.CK.5914.01A	18	40503500	43405630	44	0.1876	NEUTRAL	NA	6	"RIT2,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SYT4"
TCGA.A6.6138	18	40548003	48414925	2780	-0.0088	NEUTRAL	NA	41	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,ME2,MRO,MYO5B,PIAS2,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.3518	18	40669137	78015056	13648	-0.004	NEUTRAL	NA	135	Too-Many
TCGA.AA.A00D.01A	18	40695330	43405630	39	-0.3937	NEUTRAL	NA	6	"RIT2,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SYT4"
TCGA.F4.6808	18	41251069	41657565	101	0.0709	NEUTRAL	NA	0	None
TCGA.D5.6929	18	41252412	45525635	1456	0.0158	NEUTRAL	NA	22	"ATP5A1,C18orf25,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PSTPIP2,RNF165,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.DY.A1DG	18	41653895	42966724	479	-0.4402	NEUTRAL	NA	2	"SETBP1,SLC14A2"
TCGA.AG.A01W.01A	18	41873864	41928961	9	-0.471	NEUTRAL	NA	0	None
TCGA.G5.6641	18	41984947	46852114	1747	0.0395	NEUTRAL	NA	26	"ATP5A1,C18orf25,CTIF,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PSTPIP2,RNF165,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AY.4071	18	41984947	76716876	12976	-0.0012	NEUTRAL	NA	122	Too-Many
TCGA.AA.3864	18	42055271	42078733	8	0.3499	NEUTRAL	NA	0	None
TCGA.AA.3864	18	42079756	64165360	7773	0.0154	NEUTRAL	NA	95	"ACAA2,ALPK2,ATP5A1,ATP8B1,BCL2,BOD1L2,C18orf25,C18orf32,C18orf54,CCBE1,CCDC68,CDH20,CDH7,CFAP53,CPLX4,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,EPG5,FECH,GRP,HAUS1,HDHD2,HMSD,IER3IP1,KATNAL2,KDSR,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,LOXHD1,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIAS2,PIGN,PMAIP1,POLI,PSTPIP2,RAB27B,RAX,RNF152,RNF165,RPL17,RPL17-C18orf32,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA3,ST8SIA5,STARD6,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZBTB7C,ZCCHC2,ZNF532"
TCGA.AA.3982	18	42101048	43095004	418	-0.3802	NEUTRAL	NA	2	"SETBP1,SLC14A2"
TCGA.AA.3850	18	42229323	43095230	391	-0.16545	NEUTRAL	NA	2	"SETBP1,SLC14A2"
TCGA.AG.3909.01A	18	42281264	43319456	31	-0.3843	NEUTRAL	NA	3	"SETBP1,SLC14A1,SLC14A2"
TCGA.A6.6648	18	42308171	78015056	13236	-0.2968	NEUTRAL	NA	133	Too-Many
TCGA.AF.2689	18	42489772	76660692	12837	-0.4109	NEUTRAL	NA	122	Too-Many
TCGA.A6.5661	18	42669610	49534906	2541	-0.326	NEUTRAL	NA	41	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,ELAC1,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,PIAS2,PSTPIP2,RNF165,RPL17,RPL17-C18orf32,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.DT.5265	18	42678881	42870302	87	0.0753	NEUTRAL	NA	1	SLC14A2
TCGA.NH.A6GA	18	42741985	78015056	13033	-0.1136	NEUTRAL	NA	132	Too-Many
TCGA.F5.6811.01A	18	42813331	58070836	558	-0.3624	NEUTRAL	NA	72	"ACAA2,ALPK2,ATP5A1,ATP8B1,BOD1L2,C18orf25,C18orf32,C18orf54,CCBE1,CCDC68,CFAP53,CPLX4,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,EPG5,FECH,GRP,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LMAN1,LOC100505549,LOC101927322,LOXHD1,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PIAS2,PMAIP1,POLI,PSTPIP2,RAB27B,RAX,RNF165,RPL17,RPL17-C18orf32,SEC11C,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA3,ST8SIA5,STARD6,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TXNL1,WDR7,ZBTB7C,ZNF532"
TCGA.CK.4952.01A	18	42813331	76106096	1049	-0.1249	NEUTRAL	NA	121	Too-Many
TCGA.AG.3728	18	42821456	47316992	1566	0.0108	NEUTRAL	NA	30	"ACAA2,ATP5A1,C18orf25,C18orf32,CTIF,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,PIAS2,PSTPIP2,RNF165,RPL17,RPL17-C18orf32,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.CM.5348	18	42821699	42896189	28	0.1096	NEUTRAL	NA	1	SLC14A2
TCGA.AA.3941	18	43095230	43181029	44	-0.1936	NEUTRAL	NA	1	SLC14A2
TCGA.AA.3811	18	43095230	48831682	2017	0.3367	NEUTRAL	NA	41	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,ELAC1,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,PIAS2,PSTPIP2,RNF165,RPL17,RPL17-C18orf32,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.3982	18	43095230	49128435	2145	-0.0791	NEUTRAL	NA	41	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,ELAC1,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,PIAS2,PSTPIP2,RNF165,RPL17,RPL17-C18orf32,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.3850	18	43096055	48822866	2014	0.23395	NEUTRAL	NA	41	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,ELAC1,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,PIAS2,PSTPIP2,RNF165,RPL17,RPL17-C18orf32,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.3941	18	43188756	44585954	446	-0.0661	NEUTRAL	NA	17	"ATP5A1,C18orf25,EPG5,HAUS1,KATNAL2,LOXHD1,PIAS2,PSTPIP2,RNF165,SIGLEC15,SLC14A1,SLC14A2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.G4.6314	18	43192249	45918254	918	-0.3573	NEUTRAL	NA	22	"ATP5A1,C18orf25,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PSTPIP2,RNF165,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.A00Q.01A	18	43204592	43422024	31	-0.2332	NEUTRAL	NA	3	"SIGLEC15,SLC14A1,SLC14A2"
TCGA.AA.A00A.01A	18	43247757	43619865	37	0.2194	NEUTRAL	NA	5	"EPG5,PSTPIP2,SIGLEC15,SLC14A1,SLC14A2"
TCGA.AA.A00N.01A	18	43328275	43458950	19	-0.2855	NEUTRAL	NA	3	"EPG5,SIGLEC15,SLC14A1"
TCGA.AG.A00C.01A	18	43416942	43438500	7	-0.2087	NEUTRAL	NA	2	"EPG5,SIGLEC15"
TCGA.AG.A01L.01A	18	43416942	43440028	8	-0.1205	NEUTRAL	NA	2	"EPG5,SIGLEC15"
TCGA.AA.A00D.01A	18	43416942	43619865	23	0.0226	NEUTRAL	NA	3	"EPG5,PSTPIP2,SIGLEC15"
TCGA.AA.A010.01A	18	43422024	43456164	11	-0.4521	NEUTRAL	NA	2	"EPG5,SIGLEC15"
TCGA.AA.A00Q.01A	18	43440028	43707970	34	0.2847	NEUTRAL	NA	4	"ATP5A1,EPG5,HAUS1,PSTPIP2"
TCGA.AG.4009.01A	18	43445559	44470496	98	-0.2878	NEUTRAL	NA	9	"ATP5A1,C18orf25,EPG5,HAUS1,LOXHD1,PIAS2,PSTPIP2,RNF165,ST8SIA5"
TCGA.AA.A00L.01A	18	43571811	43652040	11	0.3488	NEUTRAL	NA	1	PSTPIP2
TCGA.AG.3891.01A	18	43579354	43707970	21	-0.132	NEUTRAL	NA	3	"ATP5A1,HAUS1,PSTPIP2"
TCGA.AA.3870	18	43631857	45976707	780	0.0187	NEUTRAL	NA	18	"ATP5A1,C18orf25,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PSTPIP2,RNF165,SKOR2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AG.A00C.01A	18	43664212	43705632	14	-0.2267	NEUTRAL	NA	2	"ATP5A1,HAUS1"
TCGA.AA.A00N.01A	18	43678067	46956584	159	0.3509	NEUTRAL	NA	20	"ATP5A1,C18orf25,CTIF,DYM,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,RNF165,SKOR2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.A00D.01A	18	43698106	46448101	115	-0.1289	NEUTRAL	NA	18	"C18orf25,CTIF,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,RNF165,SKOR2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.DY.A1DG	18	43718617	45952624	763	-0.4206	NEUTRAL	NA	15	"C18orf25,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,RNF165,SKOR2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.A00L.01A	18	43795798	44027474	5	-0.1468	NEUTRAL	NA	2	"C18orf25,RNF165"
TCGA.AA.A00Q.01A	18	43795798	44171846	32	-0.2998	NEUTRAL	NA	3	"C18orf25,LOXHD1,RNF165"
TCGA.AZ.4684.01A	18	43795798	44395206	65	-0.4805	NEUTRAL	NA	5	"C18orf25,LOXHD1,PIAS2,RNF165,ST8SIA5"
TCGA.CK.5914.01A	18	43833616	44641451	98	0.0033	NEUTRAL	NA	11	"C18orf25,HDHD2,KATNAL2,LOXHD1,PIAS2,RNF165,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AU.3779	18	43893254	47481133	1254	-0.3579	NEUTRAL	NA	23	"ACAA2,C18orf32,CTIF,DYM,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MYO5B,PIAS2,RNF165,RPL17,RPL17-C18orf32,SKOR2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.A00K.01A	18	44013141	46448101	108	-0.4498	NEUTRAL	NA	16	"CTIF,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,RNF165,SKOR2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.A00L.01A	18	44030221	47813860	173	0.3681	NEUTRAL	NA	26	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DYM,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MBD1,MYO5B,PIAS2,RNF165,RPL17,RPL17-C18orf32,SKOR2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AG.3909.01A	18	44064930	44236850	6	0.1974	NEUTRAL	NA	1	LOXHD1
TCGA.AA.A00Q.01A	18	44172405	46162924	65	0.1377	NEUTRAL	NA	14	"CTIF,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,SKOR2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.A01Q.01A	18	44260008	46190781	61	0.0419	NEUTRAL	NA	13	"CTIF,HDHD2,IER3IP1,KATNAL2,PIAS2,SKOR2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.G4.6299	18	44312462	45682631	412	-0.1034	NEUTRAL	NA	12	"HDHD2,IER3IP1,KATNAL2,PIAS2,SKOR2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.3509.01A	18	44398300	44548627	13	0.1102	NEUTRAL	NA	4	"KATNAL2,PIAS2,TCEB3CL,TCEB3CL2"
TCGA.AZ.4684.01A	18	44435306	45368159	34	-0.4787	NEUTRAL	NA	10	"HDHD2,IER3IP1,KATNAL2,PIAS2,SKOR2,SMAD2,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AG.A008.01A	18	44554544	44559333	3	-0.1473	NEUTRAL	NA	4	"KATNAL2,TCEB3B,TCEB3C,TCEB3CL"
TCGA.AA.3980.01A	18	44559333	47093775	79	-0.449	NEUTRAL	NA	14	"C18orf32,CTIF,DYM,HDHD2,IER3IP1,KATNAL2,LIPG,RPL17,RPL17-C18orf32,SKOR2,SMAD2,SMAD7,TCEB3B,ZBTB7C"
TCGA.AF.3914.01A	18	44559913	47088630	76	-0.3116	NEUTRAL	NA	14	"C18orf32,CTIF,DYM,HDHD2,IER3IP1,KATNAL2,LIPG,RPL17,RPL17-C18orf32,SKOR2,SMAD2,SMAD7,TCEB3B,ZBTB7C"
TCGA.AG.4009.01A	18	44579281	44683777	22	-0.3172	NEUTRAL	NA	3	"HDHD2,IER3IP1,KATNAL2"
TCGA.AA.3941	18	44587101	45483539	297	-0.3864	NEUTRAL	NA	5	"HDHD2,IER3IP1,KATNAL2,SKOR2,SMAD2"
TCGA.AA.A010.01A	18	44601596	45374809	18	0.2337	NEUTRAL	NA	5	"HDHD2,IER3IP1,KATNAL2,SKOR2,SMAD2"
TCGA.AA.A01S	18	44807765	45593097	285	-0.01025	NEUTRAL	NA	2	"SMAD2,ZBTB7C"
TCGA.F4.6461	18	45311200	48109324	1021	-0.0291	NEUTRAL	NA	16	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DYM,LIPG,MAPK4,MBD1,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD2,SMAD7,ZBTB7C"
TCGA.AA.3941	18	45483589	48822866	1219	-0.113	NEUTRAL	NA	20	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DYM,ELAC1,LIPG,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD4,SMAD7,ZBTB7C"
TCGA.D5.6929	18	45546223	45818266	113	-0.4061	NEUTRAL	NA	1	ZBTB7C
TCGA.AA.A02K.01A	18	45555603	78005100	990	-0.3692	NEUTRAL	NA	111	Too-Many
TCGA.AG.4009.01A	18	45566269	46383889	12	0.0621	NEUTRAL	NA	2	"CTIF,ZBTB7C"
TCGA.G4.6314	18	45924995	46203120	118	-0.0104	NEUTRAL	NA	1	CTIF
TCGA.G4.6628	18	45959648	78015056	11844	-0.0042	NEUTRAL	NA	110	Too-Many
TCGA.AA.3870	18	45977074	48005246	753	-0.4552	NEUTRAL	NA	13	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DYM,LIPG,MBD1,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD7"
TCGA.D5.6929	18	46018558	46088077	20	-0.1439	NEUTRAL	NA	1	CTIF
TCGA.AG.A01W.01A	18	46046642	46062915	12	-0.3254	NEUTRAL	NA	0	None
TCGA.D5.6929	18	46092370	46152072	31	0.3065	NEUTRAL	NA	1	CTIF
TCGA.D5.6929	18	46153594	46221996	28	-0.1031	NEUTRAL	NA	1	CTIF
TCGA.AA.A02O	18	46163971	47445251	409	0.0094	NEUTRAL	NA	9	"ACAA2,C18orf32,CTIF,DYM,LIPG,MYO5B,RPL17,RPL17-C18orf32,SMAD7"
TCGA.AA.A00Q.01A	18	46190063	46385663	9	-0.3709	NEUTRAL	NA	1	CTIF
TCGA.G4.6314	18	46214627	48392549	837	-0.3221	NEUTRAL	NA	15	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DYM,LIPG,MAPK4,MBD1,MRO,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD7"
TCGA.D5.6929	18	46222341	47212501	288	0.1784	NEUTRAL	NA	7	"C18orf32,CTIF,DYM,LIPG,RPL17,RPL17-C18orf32,SMAD7"
TCGA.AG.4009.01A	18	46385663	47088630	30	-0.3496	NEUTRAL	NA	7	"C18orf32,CTIF,DYM,LIPG,RPL17,RPL17-C18orf32,SMAD7"
TCGA.AA.A00Q.01A	18	46447723	47777864	47	0.204	NEUTRAL	NA	9	"ACAA2,C18orf32,CFAP53,DYM,LIPG,MYO5B,RPL17,RPL17-C18orf32,SMAD7"
TCGA.AA.A02E.01A	18	46448101	67860473	741	-0.4874	NEUTRAL	NA	78	"ACAA2,ALPK2,ATP8B1,BCL2,BOD1L2,C18orf32,C18orf54,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CFAP53,CPLX4,CXXC1,DCC,DOK6,DSEL,DYM,DYNAP,ELAC1,FECH,GRP,HMSD,KDSR,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,RPL17,RPL17-C18orf32,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,SMAD7,ST8SIA3,STARD6,TCF4,TMX3,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AA.A00D.01A	18	46468798	47329035	39	0.2636	NEUTRAL	NA	7	"ACAA2,C18orf32,DYM,LIPG,RPL17,RPL17-C18orf32,SMAD7"
TCGA.AG.3891.01A	18	46476133	47797814	91	-0.4435	NEUTRAL	NA	10	"ACAA2,C18orf32,CFAP53,DYM,LIPG,MBD1,MYO5B,RPL17,RPL17-C18orf32,SMAD7"
TCGA.AA.A01Q.01A	18	46476133	61564288	482	0.0973	NEUTRAL	NA	67	"ACAA2,ALPK2,ATP8B1,BCL2,BOD1L2,C18orf32,C18orf54,CCBE1,CCDC68,CDH20,CFAP53,CPLX4,CXXC1,DCC,DYM,DYNAP,ELAC1,FECH,GRP,KDSR,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,RPL17,RPL17-C18orf32,SEC11C,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SKA1,SMAD4,SMAD7,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.DY.A1DG	18	46482906	47180067	162	-0.4526	NEUTRAL	NA	5	"C18orf32,DYM,LIPG,RPL17,RPL17-C18orf32"
TCGA.AA.A010.01A	18	46570375	47009902	18	-0.2022	NEUTRAL	NA	3	"C18orf32,DYM,RPL17-C18orf32"
TCGA.AF.2690	18	46700695	55800228	3140	-0.281	NEUTRAL	NA	36	"ACAA2,ATP8B1,BOD1L2,C18orf32,C18orf54,CCDC68,CFAP53,CXXC1,DCC,DYM,DYNAP,ELAC1,FECH,LIPG,LOC100505549,MAPK4,MBD1,MBD2,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,POLI,RAB27B,RPL17,RPL17-C18orf32,SKA1,SMAD4,ST8SIA3,STARD6,TCF4,TXNL1,WDR7"
TCGA.G5.6641	18	46859523	61766975	5315	-0.3964	NEUTRAL	NA	69	"ACAA2,ALPK2,ATP8B1,BCL2,BOD1L2,C18orf32,C18orf54,CCBE1,CCDC68,CDH20,CFAP53,CPLX4,CXXC1,DCC,DYM,DYNAP,ELAC1,FECH,GRP,HMSD,KDSR,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,RPL17,RPL17-C18orf32,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.A6.2681	18	46885673	64741827	6221	-0.4801	NEUTRAL	NA	71	"ACAA2,ALPK2,ATP8B1,BCL2,BOD1L2,C18orf32,C18orf54,CCBE1,CCDC68,CDH19,CDH20,CDH7,CFAP53,CPLX4,CXXC1,DCC,DYM,DYNAP,ELAC1,FECH,GRP,HMSD,KDSR,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,RPL17,RPL17-C18orf32,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AG.A00C.01A	18	47008649	47361658	27	-0.1237	NEUTRAL	NA	6	"ACAA2,C18orf32,LIPG,MYO5B,RPL17,RPL17-C18orf32"
TCGA.AA.A010.01A	18	47088630	47113069	9	-0.1632	NEUTRAL	NA	1	LIPG
TCGA.AA.A00A.01A	18	47095760	47813860	40	0.1392	NEUTRAL	NA	6	"ACAA2,CFAP53,CXXC1,LIPG,MBD1,MYO5B"
TCGA.AG.3906.01A	18	47107743	47361658	15	0.1878	NEUTRAL	NA	3	"ACAA2,LIPG,MYO5B"
TCGA.A6.6653	18	47139999	62033260	5370	-0.1502	NEUTRAL	NA	64	"ACAA2,ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC68,CDH20,CFAP53,CPLX4,CXXC1,DCC,DYNAP,ELAC1,FECH,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AA.3980.01A	18	47310173	65182232	657	-0.5109	NEUTRAL	NA	67	"ACAA2,ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC68,CDH19,CDH20,CDH7,CFAP53,CPLX4,CXXC1,DCC,DSEL,DYNAP,ELAC1,FECH,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.CM.5348	18	47316992	73965824	10002	0.2486	NEUTRAL	NA	87	"ACAA2,ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,C18orf63,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CFAP53,CNDP1,CNDP2,CPLX4,CXXC1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,NETO1,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF407,ZNF532"
TCGA.D5.6929	18	47328028	48402071	510	0.0415	NEUTRAL	NA	8	"ACAA2,CFAP53,CXXC1,MAPK4,MBD1,MRO,MYO5B,SKA1"
TCGA.AF.3914.01A	18	47352793	77960563	909	-0.4053	NEUTRAL	NA	102	Too-Many
TCGA.AZ.6607	18	47358631	74252336	10062	-0.4196	NEUTRAL	NA	88	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CFAP53,CNDP1,CNDP2,CPLX4,CXXC1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,NETO1,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF407,ZNF516,ZNF532"
TCGA.AG.4009.01A	18	47361658	77066954	842	-0.4203	NEUTRAL	NA	93	"ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CFAP53,CNDP1,CNDP2,CPLX4,CXXC1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MBP,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,NETO1,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.A00N.01A	18	47363032	47406687	16	-0.0202	NEUTRAL	NA	1	MYO5B
TCGA.CK.5914.01A	18	47363032	47753730	38	0.3569	NEUTRAL	NA	2	"CFAP53,MYO5B"
TCGA.AG.3909.01A	18	47421291	47563168	19	-0.1162	NEUTRAL	NA	1	MYO5B
TCGA.AA.A00D.01A	18	47438380	47813860	24	-0.176	NEUTRAL	NA	4	"CFAP53,CXXC1,MBD1,MYO5B"
TCGA.AA.A010.01A	18	47581611	47788311	8	-0.3393	NEUTRAL	NA	2	"CFAP53,MYO5B"
TCGA.AA.A00N.01A	18	47753730	47777864	5	0.1786	NEUTRAL	NA	1	CFAP53
TCGA.AA.3930.01A	18	47788311	47811082	17	-0.3936	NEUTRAL	NA	3	"CFAP53,CXXC1,MBD1"
TCGA.AA.A00K.01A	18	47809624	48575591	41	0.0074	NEUTRAL	NA	7	"CXXC1,ELAC1,MAPK4,ME2,MRO,SKA1,SMAD4"
TCGA.AA.3930.01A	18	47811364	54363425	169	-0.0574	NEUTRAL	NA	19	"C18orf54,CCDC68,CXXC1,DCC,DYNAP,ELAC1,MAPK4,MBD2,ME2,MEX3C,MRO,POLI,RAB27B,SKA1,SMAD4,STARD6,TCF4,TXNL1,WDR7"
TCGA.AG.A016.01A	18	47813860	48335631	18	-0.17	NEUTRAL	NA	4	"CXXC1,MAPK4,MRO,SKA1"
TCGA.AA.A00Q.01A	18	47902148	48575591	33	0.377	NEUTRAL	NA	6	"ELAC1,MAPK4,ME2,MRO,SKA1,SMAD4"
TCGA.G4.6299	18	47945223	78015056	11145	-0.0986	NEUTRAL	NA	97	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD2,MBP,MC4R,ME2,MEX3C,MRO,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.A00D.01A	18	48190297	48575006	26	0.1978	NEUTRAL	NA	5	"ELAC1,MAPK4,ME2,MRO,SMAD4"
TCGA.AA.A00N.01A	18	48190297	48722920	43	0.1774	NEUTRAL	NA	6	"ELAC1,MAPK4,ME2,MEX3C,MRO,SMAD4"
TCGA.CK.5914.01A	18	48190297	51795867	80	-0.2564	NEUTRAL	NA	9	"DCC,ELAC1,MAPK4,MBD2,ME2,MEX3C,MRO,POLI,SMAD4"
TCGA.AA.A010.01A	18	48241399	54283432	143	-0.4136	NEUTRAL	NA	16	"C18orf54,CCDC68,DCC,DYNAP,ELAC1,MAPK4,MBD2,ME2,MEX3C,MRO,POLI,RAB27B,SMAD4,STARD6,TCF4,TXNL1"
TCGA.D5.6929	18	48414925	78015056	10909	-0.3991	NEUTRAL	NA	95	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,ME2,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.A00L.01A	18	48500748	55247250	161	0.3513	NEUTRAL	NA	18	"BOD1L2,C18orf54,CCDC68,DCC,DYNAP,ELAC1,FECH,MBD2,MEX3C,ONECUT2,POLI,RAB27B,SMAD4,ST8SIA3,STARD6,TCF4,TXNL1,WDR7"
TCGA.AA.A00D.01A	18	48575591	51797689	48	-0.1358	NEUTRAL	NA	5	"DCC,MBD2,MEX3C,POLI,SMAD4"
TCGA.AA.A00Q.01A	18	48581111	78005105	627	0.0868	NEUTRAL	NA	93	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.A6.5664	18	48617653	78015056	10866	-0.3352	NEUTRAL	NA	92	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.F4.6855	18	48684713	78015056	10853	-0.4054	NEUTRAL	NA	92	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.3592	18	48712539	78015056	10877	-0.5133	NEUTRAL	NA	92	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AU.3779	18	48802195	50815035	811	0.0276	NEUTRAL	NA	1	DCC
TCGA.AA.3850	18	48827497	49259337	190	-0.06965	NEUTRAL	NA	0	None
TCGA.AA.3811	18	48840677	49283781	201	0.0557	NEUTRAL	NA	0	None
TCGA.AH.6903	18	48930960	49720849	302	-0.037	NEUTRAL	NA	0	None
TCGA.G4.6310	18	48954109	49790060	319	-0.4906	NEUTRAL	NA	0	None
TCGA.F4.6461	18	49218256	54419060	1615	-0.4568	NEUTRAL	NA	11	"C18orf54,CCDC68,DCC,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4,TXNL1,WDR7"
TCGA.AA.3850	18	49260267	54612861	1653	-0.39295	NEUTRAL	NA	11	"C18orf54,CCDC68,DCC,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4,TXNL1,WDR7"
TCGA.AA.3811	18	49290989	51064850	661	-0.1493	NEUTRAL	NA	1	DCC
TCGA.A6.5661	18	49540053	54724060	1583	0.2566	NEUTRAL	NA	11	"C18orf54,CCDC68,DCC,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4,TXNL1,WDR7"
TCGA.G4.6322	18	50063876	52530017	755	0.0384	NEUTRAL	NA	7	"C18orf54,DCC,DYNAP,MBD2,POLI,RAB27B,STARD6"
TCGA.G4.6310	18	50265528	78015056	10241	-0.4686	NEUTRAL	NA	91	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3509.01A	18	50278387	51880821	50	-0.3337	NEUTRAL	NA	4	"DCC,MBD2,POLI,STARD6"
TCGA.AZ.4684.01A	18	50450039	50976819	19	0.2159	NEUTRAL	NA	1	DCC
TCGA.AG.A02X.01A	18	50451567	78005105	783	-0.2828	NEUTRAL	NA	91	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.DT.5265	18	50455008	60507849	3435	0.0908	NEUTRAL	NA	38	"ALPK2,ATP8B1,BOD1L2,C18orf54,CCBE1,CCDC68,CDH20,CPLX4,DCC,DYNAP,FECH,GRP,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MC4R,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,WDR7,ZCCHC2,ZNF532"
TCGA.A6.2674	18	50726558	78015056	10072	-0.1999	NEUTRAL	NA	91	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AZ.4684.01A	18	50985555	51807037	18	-0.5003	NEUTRAL	NA	3	"DCC,MBD2,POLI"
TCGA.AA.A00N.01A	18	51052937	51795867	10	0.1684	NEUTRAL	NA	3	"DCC,MBD2,POLI"
TCGA.AA.3811	18	51084735	51395808	97	-0.3264	NEUTRAL	NA	0	None
TCGA.AZ.5407	18	51212757	78015056	9928	-0.2397	NEUTRAL	NA	90	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3982	18	51388196	53780233	651	-0.3776	NEUTRAL	NA	8	"C18orf54,CCDC68,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4"
TCGA.AA.3811	18	51395934	57715607	2231	0.2161	NEUTRAL	NA	29	"ALPK2,ATP8B1,BOD1L2,C18orf54,CCBE1,CCDC68,CPLX4,DYNAP,FECH,GRP,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,NARS,NEDD4L,ONECUT2,PMAIP1,POLI,RAB27B,RAX,SEC11C,ST8SIA3,STARD6,TCF4,TXNL1,WDR7,ZNF532"
TCGA.AA.A00K.01A	18	51692404	54361812	80	-0.1925	NEUTRAL	NA	10	"C18orf54,CCDC68,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4,TXNL1,WDR7"
TCGA.AA.A004.01A	18	51715206	77960563	736	-0.4473	NEUTRAL	NA	90	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.G4.6314	18	51759289	57124275	1810	-0.3503	NEUTRAL	NA	27	"ALPK2,ATP8B1,BOD1L2,C18orf54,CCBE1,CCDC68,CPLX4,DYNAP,FECH,GRP,LMAN1,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L,ONECUT2,POLI,RAB27B,RAX,SEC11C,ST8SIA3,STARD6,TCF4,TXNL1,WDR7,ZNF532"
TCGA.AH.6903	18	51767003	61539904	3394	0.0104	NEUTRAL	NA	46	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC68,CDH20,CPLX4,DYNAP,FECH,GRP,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MC4R,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SERPINB11,SERPINB12,SERPINB13,SERPINB3,SERPINB4,SERPINB5,SERPINB7,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AG.A00C.01A	18	51797689	51892042	19	-0.4157	NEUTRAL	NA	3	"C18orf54,POLI,STARD6"
TCGA.AA.3509.01A	18	51886916	52574958	17	0.3511	NEUTRAL	NA	4	"C18orf54,CCDC68,DYNAP,RAB27B"
TCGA.DM.A282.01A	18	51892042	51900543	3	0.3394	NEUTRAL	NA	1	C18orf54
TCGA.CK.5914.01A	18	52258384	52609869	18	-0.3001	NEUTRAL	NA	3	"CCDC68,DYNAP,RAB27B"
TCGA.AA.A00D.01A	18	52258384	78005105	550	0.0816	NEUTRAL	NA	86	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.EI.6512	18	52399614	78015056	9643	-0.416	NEUTRAL	NA	85	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AZ.4684.01A	18	52574958	55217915	69	-0.2918	NEUTRAL	NA	8	"BOD1L2,CCDC68,FECH,ONECUT2,ST8SIA3,TCF4,TXNL1,WDR7"
TCGA.AU.3779	18	52942826	78015056	9462	-0.3249	NEUTRAL	NA	83	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.G4.6322	18	53652143	74779865	8170	0.0102	NEUTRAL	NA	70	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,ONECUT2,PHLPP1,PIGN,PMAIP1,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3982	18	53801554	55194277	508	-0.2913	NEUTRAL	NA	5	"BOD1L2,ONECUT2,ST8SIA3,TXNL1,WDR7"
TCGA.AA.A010.01A	18	54285215	55024127	33	0.3339	NEUTRAL	NA	4	"BOD1L2,ST8SIA3,TXNL1,WDR7"
TCGA.AA.3549	18	54312445	56945837	1064	0.05	NEUTRAL	NA	16	"ALPK2,ATP8B1,BOD1L2,FECH,GRP,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L,ONECUT2,RAX,SEC11C,ST8SIA3,WDR7,ZNF532"
TCGA.AA.3930.01A	18	54385178	55102942	21	-0.4077	NEUTRAL	NA	4	"BOD1L2,ONECUT2,ST8SIA3,WDR7"
TCGA.F4.6461	18	54422826	55067359	266	0.0111	NEUTRAL	NA	3	"BOD1L2,ST8SIA3,WDR7"
TCGA.A6.3810.01A	18	54443965	55020041	13	0.1128	NEUTRAL	NA	3	"BOD1L2,ST8SIA3,WDR7"
TCGA.AA.3850	18	54632501	54670289	12	-0.32155	NEUTRAL	NA	1	WDR7
TCGA.AA.3941	18	54632501	54946417	142	-0.2065	NEUTRAL	NA	2	"BOD1L2,WDR7"
TCGA.AA.3850	18	54673493	54911108	120	0.26235	NEUTRAL	NA	2	"BOD1L2,WDR7"
TCGA.A6.5661	18	54724696	57799604	1347	-0.3442	NEUTRAL	NA	19	"ALPK2,ATP8B1,BOD1L2,CCBE1,CPLX4,FECH,GRP,LMAN1,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L,ONECUT2,PMAIP1,RAX,SEC11C,ST8SIA3,ZNF532"
TCGA.AA.3850	18	54918412	55114146	88	-0.04745	NEUTRAL	NA	2	"ONECUT2,ST8SIA3"
TCGA.AA.3941	18	54946524	55122774	78	-0.4991	NEUTRAL	NA	2	"ONECUT2,ST8SIA3"
TCGA.A6.3810.01A	18	55021596	78005105	709	-0.2194	NEUTRAL	NA	79	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.A010.01A	18	55027199	55336503	37	-0.2794	NEUTRAL	NA	6	"ATP8B1,FECH,LOC100505549,NARS,ONECUT2,ST8SIA3"
TCGA.F4.6461	18	55068947	57182907	904	-0.5059	NEUTRAL	NA	16	"ALPK2,ATP8B1,CCBE1,CPLX4,FECH,GRP,LMAN1,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L,ONECUT2,RAX,SEC11C,ZNF532"
TCGA.AA.3941	18	55125437	57337229	967	-0.0885	NEUTRAL	NA	16	"ALPK2,ATP8B1,CCBE1,CPLX4,FECH,GRP,LMAN1,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L,ONECUT2,RAX,SEC11C,ZNF532"
TCGA.AA.3930.01A	18	55143652	55362635	44	0.3193	NEUTRAL	NA	5	"ATP8B1,FECH,LOC100505549,NARS,ONECUT2"
TCGA.AA.3850	18	55145546	55167459	35	-0.22545	NEUTRAL	NA	1	ONECUT2
TCGA.AA.3850	18	55168099	57337229	915	0.29605	NEUTRAL	NA	15	"ALPK2,ATP8B1,CCBE1,CPLX4,FECH,GRP,LMAN1,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L,RAX,SEC11C,ZNF532"
TCGA.AA.3982	18	55195434	57654360	1048	-0.0538	NEUTRAL	NA	16	"ALPK2,ATP8B1,CCBE1,CPLX4,FECH,GRP,LMAN1,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L,PMAIP1,RAX,SEC11C,ZNF532"
TCGA.AA.A00K.01A	18	55217915	78005105	478	0.3197	NEUTRAL	NA	77	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.A014.01A	18	55221443	55990437	52	-0.1607	NEUTRAL	NA	5	"ATP8B1,FECH,LOC100505549,NARS,NEDD4L"
TCGA.AG.A00Y.01A	18	55233641	55919173	46	0.0209	NEUTRAL	NA	5	"ATP8B1,FECH,LOC100505549,NARS,NEDD4L"
TCGA.AG.A00C.01A	18	55240431	55351220	29	-0.2635	NEUTRAL	NA	4	"ATP8B1,FECH,LOC100505549,NARS"
TCGA.AG.3891.01A	18	55268852	55919173	43	-0.1206	NEUTRAL	NA	4	"ATP8B1,LOC100505549,NARS,NEDD4L"
TCGA.AA.3939.01A	18	55278808	55919173	36	-0.1193	NEUTRAL	NA	4	"ATP8B1,LOC100505549,NARS,NEDD4L"
TCGA.AA.A00N.01A	18	55342035	55832959	16	0.3403	NEUTRAL	NA	2	"ATP8B1,NEDD4L"
TCGA.AA.3930.01A	18	55364784	61654059	321	-0.0754	NEUTRAL	NA	35	"ALPK2,ATP8B1,BCL2,CCBE1,CDH20,CPLX4,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MC4R,NEDD4L,PHLPP1,PIGN,PMAIP1,RAX,RNF152,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,TNFRSF11A,VPS4B,ZCCHC2,ZNF532"
TCGA.A6.3808.01A	18	55398818	56586273	65	0.3433	NEUTRAL	NA	6	"ALPK2,ATP8B1,LOC101927322,MALT1,NEDD4L,ZNF532"
TCGA.AF.2691	18	55479670	78015056	8612	-0.1409	NEUTRAL	NA	73	"ADNP2,ALPK2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MBP,MC4R,NEDD4L,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3713	18	55938938	78015056	8405	-0.0039	NEUTRAL	NA	73	"ADNP2,ALPK2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MBP,MC4R,NEDD4L,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.A010.01A	18	55983143	59931911	159	0.258	NEUTRAL	NA	17	"ALPK2,CCBE1,CDH20,CPLX4,GRP,KIAA1468,LMAN1,LOC101927322,MALT1,MC4R,NEDD4L,PIGN,PMAIP1,RAX,RNF152,SEC11C,ZNF532"
TCGA.AA.A00N.01A	18	56016706	56149003	17	0.0511	NEUTRAL	NA	2	"ALPK2,NEDD4L"
TCGA.CA.5256	18	56059059	68120761	4264	-0.4213	NEUTRAL	NA	43	"ALPK2,BCL2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CPLX4,DOK6,DSEL,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MC4R,NEDD4L,PHLPP1,PIGN,PMAIP1,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SOCS6,TMX3,TNFRSF11A,VPS4B,ZCCHC2,ZNF532"
TCGA.CK.5914.01A	18	56149003	56274513	12	0.1769	NEUTRAL	NA	1	ALPK2
TCGA.AA.A00N.01A	18	56274513	56414600	18	-0.0283	NEUTRAL	NA	3	"ALPK2,LOC101927322,MALT1"
TCGA.CK.5914.01A	18	56278872	56400577	11	-0.5084	NEUTRAL	NA	3	"ALPK2,LOC101927322,MALT1"
TCGA.AZ.4684.01A	18	56390263	59922619	104	-0.4091	NEUTRAL	NA	14	"CCBE1,CDH20,CPLX4,GRP,KIAA1468,LMAN1,MALT1,MC4R,PIGN,PMAIP1,RAX,RNF152,SEC11C,ZNF532"
TCGA.CK.5914.01A	18	56401480	56807128	18	0.2151	NEUTRAL	NA	3	"MALT1,SEC11C,ZNF532"
TCGA.A6.3808.01A	18	56807128	67857774	335	0.2446	NEUTRAL	NA	37	"BCL2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CPLX4,DOK6,DSEL,GRP,HMSD,KDSR,KIAA1468,LMAN1,MC4R,PHLPP1,PIGN,PMAIP1,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,TMX3,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.AA.3862.01A	18	56807128	78005105	570	-0.3248	NEUTRAL	NA	68	"ADNP2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,MBP,MC4R,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.AG.A00C.01A	18	56892707	57022503	17	-0.2965	NEUTRAL	NA	4	"CPLX4,GRP,LMAN1,RAX"
TCGA.CK.5914.01A	18	56985481	57013104	6	-0.1325	NEUTRAL	NA	2	"CPLX4,LMAN1"
TCGA.AA.3861.01A	18	56998244	74672593	456	0.0291	NEUTRAL	NA	51	"BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,MC4R,NETO1,PHLPP1,PIGN,PMAIP1,RNF152,RTTN,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.F4.6461	18	57183191	62478778	1877	0.0067	NEUTRAL	NA	24	"BCL2,CCBE1,CDH20,HMSD,KDSR,KIAA1468,MC4R,PHLPP1,PIGN,PMAIP1,RNF152,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.AA.3977	18	57298879	78015056	7817	-0.0364	NEUTRAL	NA	63	"ADNP2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,MBP,MC4R,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RBFA,RNF152,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3941	18	57343665	57655247	143	-0.0981	NEUTRAL	NA	2	"CCBE1,PMAIP1"
TCGA.AA.3850	18	57349899	57662114	147	0.30605	NEUTRAL	NA	2	"CCBE1,PMAIP1"
TCGA.AU.6004	18	57636559	78015056	7614	0.0186	NEUTRAL	NA	61	"ADNP2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,MBP,MC4R,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PQLC1,RBFA,RNF152,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3850	18	57668348	57708740	11	0.05645	NEUTRAL	NA	0	None
TCGA.AA.3811	18	57719350	58473409	221	-0.0091	NEUTRAL	NA	1	MC4R
TCGA.A6.5661	18	57812637	71236587	4788	0.1947	NEUTRAL	NA	34	"BCL2,CBLN2,CCDC102B,CD226,CDH19,CDH20,CDH7,DOK6,DSEL,GTSCR1,HMSD,KDSR,KIAA1468,MC4R,NETO1,PHLPP1,PIGN,RNF152,RTTN,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SOCS6,TMX3,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.F5.6811.01A	18	58073599	58082891	6	0.1915	NEUTRAL	NA	0	None
TCGA.F5.6811.01A	18	58084852	59719906	132	-0.3736	NEUTRAL	NA	3	"CDH20,PIGN,RNF152"
TCGA.AZ.6599	18	58127213	76716876	7218	0.0237	NEUTRAL	NA	49	"BCL2,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,KDSR,KIAA1468,MBP,NETO1,PHLPP1,PIGN,RNF152,RTTN,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3811	18	58555039	62711147	1452	0.1596	NEUTRAL	NA	21	"BCL2,CDH20,HMSD,KDSR,KIAA1468,PHLPP1,PIGN,RNF152,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.DM.A28C	18	58654445	78015056	7367	0.0156	NEUTRAL	NA	60	"ADNP2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,MBP,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PQLC1,RBFA,RNF152,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3941	18	59062345	61294935	770	-0.2544	NEUTRAL	NA	13	"BCL2,CDH20,KDSR,KIAA1468,PHLPP1,PIGN,RNF152,SERPINB12,SERPINB13,SERPINB5,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.AA.3982	18	59085370	61294935	767	-0.1588	NEUTRAL	NA	13	"BCL2,CDH20,KDSR,KIAA1468,PHLPP1,PIGN,RNF152,SERPINB12,SERPINB13,SERPINB5,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.AA.3850	18	59154739	59970582	308	-0.08005	NEUTRAL	NA	4	"CDH20,KIAA1468,PIGN,RNF152"
TCGA.F5.6811.01A	18	59720566	59751245	9	0.1859	NEUTRAL	NA	1	PIGN
TCGA.F5.6811.01A	18	59753025	76036885	340	-0.3725	NEUTRAL	NA	47	"BCL2,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,KDSR,KIAA1468,MBP,NETO1,PHLPP1,PIGN,RTTN,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.CK.5914.01A	18	59755943	59781735	10	0.2068	NEUTRAL	NA	1	PIGN
TCGA.CK.5914.01A	18	59805404	59854781	12	-0.3077	NEUTRAL	NA	2	"KIAA1468,PIGN"
TCGA.AZ.4684.01A	18	59941166	60025466	13	-0.0615	NEUTRAL	NA	2	"KIAA1468,TNFRSF11A"
TCGA.AA.3509.01A	18	59942610	60025466	12	-0.2999	NEUTRAL	NA	2	"KIAA1468,TNFRSF11A"
TCGA.AG.A00C.01A	18	59972641	60217551	13	-0.2801	NEUTRAL	NA	3	"KIAA1468,TNFRSF11A,ZCCHC2"
TCGA.AA.3850	18	59977389	61131851	352	0.32135	NEUTRAL	NA	6	"BCL2,KDSR,PHLPP1,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.AA.3527	18	60028857	78015056	6848	0.0175	NEUTRAL	NA	56	"ADNP2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,MBP,NETO1,NFATC1,PARD6G,PHLPP1,PQLC1,RBFA,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.AZ.4684.01A	18	60035884	61002439	38	-0.3972	NEUTRAL	NA	5	"BCL2,KDSR,PHLPP1,TNFRSF11A,ZCCHC2"
TCGA.AA.3655	18	60586078	61331609	275	-0.0122	NEUTRAL	NA	9	"BCL2,KDSR,PHLPP1,SERPINB12,SERPINB13,SERPINB3,SERPINB4,SERPINB5,VPS4B"
TCGA.DT.5265	18	60625249	61791808	442	0.0613	NEUTRAL	NA	15	"BCL2,HMSD,KDSR,PHLPP1,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,VPS4B"
TCGA.F4.6704	18	60979012	78015056	6541	-0.4991	NEUTRAL	NA	53	"ADNP2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,VPS4B,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.A00C.01A	18	60985255	61154127	23	-0.3463	NEUTRAL	NA	4	"BCL2,KDSR,SERPINB5,VPS4B"
TCGA.AA.A00N.01A	18	60985255	61160139	26	-0.4691	NEUTRAL	NA	4	"BCL2,KDSR,SERPINB5,VPS4B"
TCGA.AA.A010.01A	18	61018073	61078651	16	-0.3319	NEUTRAL	NA	2	"KDSR,VPS4B"
TCGA.AZ.4684.01A	18	61077496	61254579	18	-0.359	NEUTRAL	NA	4	"SERPINB12,SERPINB13,SERPINB5,VPS4B"
TCGA.AA.3850	18	61135774	61174042	42	0.25065	NEUTRAL	NA	1	SERPINB5
TCGA.AA.A010.01A	18	61166305	61271104	20	-0.0439	NEUTRAL	NA	3	"SERPINB12,SERPINB13,SERPINB5"
TCGA.AA.3850	18	61181208	61243040	17	-0.31425	NEUTRAL	NA	1	SERPINB12
TCGA.AA.A017.01A	18	61260046	61304913	6	0.2645	NEUTRAL	NA	2	"SERPINB13,SERPINB4"
TCGA.AA.A01C.01A	18	61261176	61597232	44	-0.0303	NEUTRAL	NA	7	"SERPINB10,SERPINB11,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB7"
TCGA.AA.3509.01A	18	61264231	63476913	55	-0.4289	NEUTRAL	NA	10	"CDH7,HMSD,SERPINB10,SERPINB11,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB7,SERPINB8"
TCGA.AZ.4684.01A	18	61264231	63476913	55	-0.2075	NEUTRAL	NA	10	"CDH7,HMSD,SERPINB10,SERPINB11,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB7,SERPINB8"
TCGA.AA.3850	18	61276413	61323011	11	-0.07995	NEUTRAL	NA	2	"SERPINB3,SERPINB4"
TCGA.AA.A00N.01A	18	61304913	61308955	5	-0.2425	NEUTRAL	NA	1	SERPINB4
TCGA.AA.A017.01A	18	61322839	61388068	13	0.2268	NEUTRAL	NA	2	"SERPINB11,SERPINB3"
TCGA.AA.A010.01A	18	61377391	61390201	7	-0.1562	NEUTRAL	NA	1	SERPINB11
TCGA.CK.5914.01A	18	61383221	61568926	16	-0.1468	NEUTRAL	NA	3	"SERPINB11,SERPINB2,SERPINB7"
TCGA.AA.A017.01A	18	61390201	61465801	6	-0.4387	NEUTRAL	NA	2	"SERPINB11,SERPINB7"
TCGA.AA.3949	18	61398345	78015056	6404	-0.0605	NEUTRAL	NA	44	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SERPINB10,SERPINB2,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.A010.01A	18	61468073	61564923	6	0.0045	NEUTRAL	NA	2	"SERPINB2,SERPINB7"
TCGA.AA.A017.01A	18	61468073	61586985	13	0.3166	NEUTRAL	NA	3	"SERPINB10,SERPINB2,SERPINB7"
TCGA.CK.4948.01B	18	61558632	77710682	332	-0.0069	NEUTRAL	NA	38	"ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,KCNG2,MBP,NETO1,NFATC1,PQLC1,RTTN,SALL3,SERPINB10,SERPINB2,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.A01Q.01A	18	61564923	61570133	4	-0.2955	NEUTRAL	NA	1	SERPINB2
TCGA.CK.5914.01A	18	61569586	61586985	7	0.3321	NEUTRAL	NA	2	"SERPINB10,SERPINB2"
TCGA.AA.A010.01A	18	61597232	63430097	14	-0.1937	NEUTRAL	NA	4	"CDH7,HMSD,SERPINB10,SERPINB8"
TCGA.AA.A017.01A	18	61597232	77960563	301	-0.4845	NEUTRAL	NA	42	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SERPINB10,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.A01Q.01A	18	61602045	77089091	182	-0.0986	NEUTRAL	NA	33	"ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,MBP,NETO1,RTTN,SALL3,SERPINB10,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3850	18	61604961	62003509	154	-0.03315	NEUTRAL	NA	2	"HMSD,SERPINB8"
TCGA.AG.A00C.01A	18	61621625	63430097	10	-0.1876	NEUTRAL	NA	3	"CDH7,HMSD,SERPINB8"
TCGA.A6.6653	18	62086530	76712675	5837	-0.1838	NEUTRAL	NA	28	"C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,MBP,NETO1,RTTN,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.DT.5265	18	62397698	63318341	250	0.0885	NEUTRAL	NA	0	None
TCGA.F4.6461	18	62479498	62764586	73	-0.4559	NEUTRAL	NA	0	None
TCGA.AA.3811	18	62713785	67406839	1660	-0.1994	NEUTRAL	NA	6	"CCDC102B,CDH19,CDH7,DOK6,DSEL,TMX3"
TCGA.F4.6461	18	62772720	64278497	454	0.0635	NEUTRAL	NA	2	"CDH19,CDH7"
TCGA.CK.5914.01A	18	63430097	64239200	22	-0.4184	NEUTRAL	NA	2	"CDH19,CDH7"
TCGA.AA.3930.01A	18	63430097	67068417	50	-0.3433	NEUTRAL	NA	6	"CCDC102B,CDH19,CDH7,DOK6,DSEL,TMX3"
TCGA.DM.A288	18	63464259	65872936	855	0.0466	NEUTRAL	NA	3	"CDH19,CDH7,DSEL"
TCGA.AA.A010.01A	18	63476913	70461302	125	0.2226	NEUTRAL	NA	12	"CBLN2,CCDC102B,CD226,CDH19,CDH7,DOK6,DSEL,GTSCR1,NETO1,RTTN,SOCS6,TMX3"
TCGA.AA.3509.01A	18	63481691	67855317	96	-0.1101	NEUTRAL	NA	8	"CCDC102B,CD226,CDH19,CDH7,DOK6,DSEL,RTTN,TMX3"
TCGA.AZ.4684.01A	18	63481691	67855317	96	0.0947	NEUTRAL	NA	8	"CCDC102B,CD226,CDH19,CDH7,DOK6,DSEL,RTTN,TMX3"
TCGA.AH.6903	18	63546550	78015056	5674	-0.0078	NEUTRAL	NA	39	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3864	18	64176024	65948118	649	-0.17	NEUTRAL	NA	2	"CDH19,DSEL"
TCGA.F4.6461	18	64292101	67572130	1254	-0.424	NEUTRAL	NA	5	"CCDC102B,CD226,DOK6,DSEL,TMX3"
TCGA.A6.2681	18	64802377	78015056	5333	-0.4811	NEUTRAL	NA	37	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.A00C.01A	18	65178180	66564404	23	-0.4097	NEUTRAL	NA	3	"CCDC102B,DSEL,TMX3"
TCGA.AG.3731	18	65924026	65978192	33	0.3543	NEUTRAL	NA	0	None
TCGA.AA.3864	18	65951277	69376307	1255	-0.1222	NEUTRAL	NA	7	"CCDC102B,CD226,DOK6,GTSCR1,RTTN,SOCS6,TMX3"
TCGA.AG.3731	18	65983053	71591297	2242	-0.0835	NEUTRAL	NA	9	"CBLN2,CCDC102B,CD226,DOK6,GTSCR1,NETO1,RTTN,SOCS6,TMX3"
TCGA.5M.AATA	18	66172753	78015056	4758	-0.0099	NEUTRAL	NA	36	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.DT.5265	18	66277426	67333845	412	0.0882	NEUTRAL	NA	3	"CCDC102B,DOK6,TMX3"
TCGA.CK.5914.01A	18	66344133	66350108	4	-0.4802	NEUTRAL	NA	1	TMX3
TCGA.AG.A032.01A	18	66344133	77960563	264	-0.4156	NEUTRAL	NA	36	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3980.01A	18	66344133	78005105	301	-0.044	NEUTRAL	NA	36	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.CK.5914.01A	18	66382094	67843864	61	-0.2218	NEUTRAL	NA	5	"CCDC102B,CD226,DOK6,RTTN,TMX3"
TCGA.EI.7004	18	67217541	78015056	4370	-0.3812	NEUTRAL	NA	34	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3930.01A	18	67231671	67614523	13	0.2292	NEUTRAL	NA	2	"CD226,DOK6"
TCGA.AA.3811	18	67408602	68504923	347	0.2284	NEUTRAL	NA	5	"CD226,DOK6,GTSCR1,RTTN,SOCS6"
TCGA.DY.A1DF	18	67488553	68568489	336	-0.0423	NEUTRAL	NA	5	"CD226,DOK6,GTSCR1,RTTN,SOCS6"
TCGA.F4.6461	18	67578668	68746685	360	0.0261	NEUTRAL	NA	4	"CD226,GTSCR1,RTTN,SOCS6"
TCGA.AA.3930.01A	18	67671343	71825199	81	-0.2683	NEUTRAL	NA	7	"CBLN2,FBXO15,GTSCR1,NETO1,RTTN,SOCS6,TIMM21"
TCGA.A6.3808.01A	18	67860473	77160334	178	-0.0901	NEUTRAL	NA	24	"ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,GALR1,GTSCR1,MBP,NETO1,NFATC1,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.A00N.01A	18	67863705	77089091	160	-0.1651	NEUTRAL	NA	23	"ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,GALR1,GTSCR1,MBP,NETO1,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3850	18	67884983	68286759	150	0.26575	NEUTRAL	NA	1	SOCS6
TCGA.CI.6621	18	67923282	74863873	3058	0.1704	NEUTRAL	NA	19	"C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,GTSCR1,MBP,NETO1,SMIM21,SOCS6,TIMM21,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.G5.6233	18	68272463	78015056	4009	-0.2769	NEUTRAL	NA	30	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3850	18	68290310	71145783	1156	-0.36605	NEUTRAL	NA	3	"CBLN2,GTSCR1,NETO1"
TCGA.AA.3811	18	68511176	69376307	352	-0.1034	NEUTRAL	NA	0	None
TCGA.F4.6461	18	68748609	71314806	1098	-0.4357	NEUTRAL	NA	2	"CBLN2,NETO1"
TCGA.AA.3842	18	68784326	78015056	3829	-0.5003	NEUTRAL	NA	29	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3864	18	69380498	78015056	3557	0.0109	NEUTRAL	NA	29	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3811	18	69392568	71237269	768	-0.0893	NEUTRAL	NA	2	"CBLN2,NETO1"
TCGA.AA.3666	18	70347869	78015056	3223	-0.4825	NEUTRAL	NA	28	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.DM.A288	18	70762340	71417200	325	0.0505	NEUTRAL	NA	0	None
TCGA.CA.5256	18	71105053	77082183	2621	-0.4483	NEUTRAL	NA	18	"ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,GALR1,MBP,SALL3,SMIM21,TIMM21,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3850	18	71160844	71417200	145	-0.47655	NEUTRAL	NA	0	None
TCGA.A6.5661	18	71237269	78015056	2791	-0.5092	NEUTRAL	NA	27	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3811	18	71251149	71482489	142	-0.1072	NEUTRAL	NA	0	None
TCGA.F4.6461	18	71322505	73207098	867	-0.0272	NEUTRAL	NA	11	"C18orf63,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,SMIM21,TIMM21,TSHZ1,ZADH2,ZNF407"
TCGA.A6.5665	18	71389008	78015056	2707	-0.4373	NEUTRAL	NA	27	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3941	18	71416991	78015056	2684	-0.1975	NEUTRAL	NA	27	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3850	18	71419855	71992501	297	0.23515	NEUTRAL	NA	4	"C18orf63,CYB5A,FBXO15,TIMM21"
TCGA.AZ.6600	18	71429378	78015056	2677	-0.3214	NEUTRAL	NA	27	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3982	18	71482928	71993952	266	-0.1309	NEUTRAL	NA	4	"C18orf63,CYB5A,FBXO15,TIMM21"
TCGA.AA.3811	18	71482928	76660692	2330	0.2095	NEUTRAL	NA	16	"C18orf63,C18orf65,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,GALR1,MBP,SMIM21,TIMM21,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.3731	18	71592670	72627198	445	-0.3995	NEUTRAL	NA	8	"C18orf63,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,TIMM21,ZNF407"
TCGA.AA.A010.01A	18	71740707	74091349	68	0.2649	NEUTRAL	NA	12	"C18orf63,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,SMIM21,TIMM21,TSHZ1,ZADH2,ZNF407,ZNF516"
TCGA.AA.3930.01A	18	71928068	72228042	21	-0.1523	NEUTRAL	NA	5	"C18orf63,CNDP1,CNDP2,CYB5A,FAM69C"
TCGA.AA.3982	18	72019709	72345889	160	-0.0377	NEUTRAL	NA	5	"C18orf63,CNDP1,CNDP2,FAM69C,ZNF407"
TCGA.CK.5914.01A	18	72201817	72775457	23	-0.4651	NEUTRAL	NA	2	"CNDP1,ZNF407"
TCGA.AA.3930.01A	18	72229235	72342964	9	0.2908	NEUTRAL	NA	2	"CNDP1,ZNF407"
TCGA.AA.3850	18	72260398	72596178	84	-0.03785	NEUTRAL	NA	1	ZNF407
TCGA.AA.A00A.01A	18	72342964	72913364	4	-0.3957	NEUTRAL	NA	2	"ZADH2,ZNF407"
TCGA.AA.3930.01A	18	72344868	74091349	23	-0.35	NEUTRAL	NA	5	"SMIM21,TSHZ1,ZADH2,ZNF407,ZNF516"
TCGA.AF.3911	18	72345889	73755815	670	-0.5104	NEUTRAL	NA	4	"SMIM21,TSHZ1,ZADH2,ZNF407"
TCGA.AA.3982	18	72373570	72447421	25	-0.1986	NEUTRAL	NA	1	ZNF407
TCGA.AA.3982	18	72473535	78015056	2189	-0.0992	NEUTRAL	NA	20	"ADNP2,ATP9B,C18orf65,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3850	18	72600567	72718490	34	0.15405	NEUTRAL	NA	1	ZNF407
TCGA.AG.3731	18	72639641	78015056	2144	-0.0481	NEUTRAL	NA	20	"ADNP2,ATP9B,C18orf65,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3850	18	72736196	73246796	246	0.26575	NEUTRAL	NA	4	"SMIM21,TSHZ1,ZADH2,ZNF407"
TCGA.F5.6814	18	72995536	78015056	1998	-0.0603	NEUTRAL	NA	18	"ADNP2,ATP9B,C18orf65,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TSHZ1,TXNL4A,ZNF236,ZNF516"
TCGA.F4.6461	18	73211661	73937994	439	-0.4855	NEUTRAL	NA	0	None
TCGA.AA.3850	18	73258466	73831147	362	-0.05725	NEUTRAL	NA	0	None
TCGA.QG.A5YV	18	73658408	78015056	1611	-0.4971	NEUTRAL	NA	16	"ADNP2,ATP9B,C18orf65,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A,ZNF236,ZNF516"
TCGA.AA.3850	18	73831709	75510808	788	0.29165	NEUTRAL	NA	5	"C18orf65,GALR1,MBP,ZNF236,ZNF516"
TCGA.F4.6461	18	73950260	75234567	560	-0.0108	NEUTRAL	NA	5	"C18orf65,GALR1,MBP,ZNF236,ZNF516"
TCGA.CM.5348	18	74018890	77922584	1408	0.2256	NEUTRAL	NA	16	"ADNP2,ATP9B,C18orf65,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A,ZNF236,ZNF516"
TCGA.AG.A01L.01A	18	74082417	74536240	7	0.0928	NEUTRAL	NA	3	"C18orf65,ZNF236,ZNF516"
TCGA.AG.3891.01A	18	74153164	74589972	9	-0.3301	NEUTRAL	NA	3	"C18orf65,ZNF236,ZNF516"
TCGA.AA.3930.01A	18	74153164	74634979	23	0.0691	NEUTRAL	NA	3	"C18orf65,ZNF236,ZNF516"
TCGA.AG.3893	18	74172073	75978997	808	-0.0153	NEUTRAL	NA	5	"C18orf65,GALR1,MBP,ZNF236,ZNF516"
TCGA.AZ.6607	18	74252602	78015056	1341	0.2304	NEUTRAL	NA	14	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A,ZNF236"
TCGA.AG.A01L.01A	18	74561445	77960563	106	-0.4783	NEUTRAL	NA	14	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A,ZNF236"
TCGA.AA.A00A.01A	18	74606930	74638971	5	-0.4538	NEUTRAL	NA	1	ZNF236
TCGA.AA.3930.01A	18	74637108	78005105	106	-0.2933	NEUTRAL	NA	14	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A,ZNF236"
TCGA.G4.6322	18	74789561	78015056	1113	-0.0271	NEUTRAL	NA	13	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AA.3850	18	75604204	78015056	692	0.35425	NEUTRAL	NA	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AG.A01W.01A	18	76018594	76106091	3	0.2808	NEUTRAL	NA	0	None
TCGA.F5.6811.01A	18	76061554	76106096	2	0.1958	NEUTRAL	NA	0	None
TCGA.AA.3811	18	76669930	78015056	318	0.3263	NEUTRAL	NA	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AF.2689	18	76669930	78015056	318	-0.4386	NEUTRAL	NA	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.CK.6746	18	76669930	78015056	317	-0.0038	NEUTRAL	NA	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.A6.6653	18	76736332	78015056	297	-0.206	NEUTRAL	NA	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AY.4071	18	76736379	78015056	296	-0.0138	NEUTRAL	NA	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AZ.6599	18	76736379	78015056	296	-0.0874	NEUTRAL	NA	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AG.3893	18	76770819	78015056	283	-0.0368	NEUTRAL	NA	10	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AA.A010.01A	18	76829374	77108065	25	0.2606	NEUTRAL	NA	1	ATP9B
TCGA.AG.4009.01A	18	77089091	77108065	10	-0.1497	NEUTRAL	NA	1	ATP9B
TCGA.AA.A01F.01A	18	77089091	77798463	44	-0.0314	NEUTRAL	NA	8	"ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PQLC1,RBFA,TXNL4A"
TCGA.AG.A00C.01A	18	77089091	77960563	49	-0.3086	NEUTRAL	NA	10	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AA.A029.01A	18	77107719	77960563	36	-0.357	NEUTRAL	NA	10	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AA.A00O.01A	18	77132756	77960563	33	-0.4262	NEUTRAL	NA	10	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AM.5820	18	77299279	77708780	91	-0.1124	NEUTRAL	NA	3	"CTDP1,KCNG2,PQLC1"
TCGA.AG.A00Y.01A	18	77488889	78005105	21	-0.2562	NEUTRAL	NA	8	"ADNP2,CTDP1,HSBP1L1,KCNG2,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AG.3594	18	77529843	78015056	126	-0.0217	NEUTRAL	NA	7	"ADNP2,HSBP1L1,KCNG2,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AA.A01Q.01A	18	77663926	78005105	23	-0.1011	NEUTRAL	NA	6	"ADNP2,HSBP1L1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AG.3891.01A	18	77693904	77960563	18	-0.336	NEUTRAL	NA	6	"ADNP2,HSBP1L1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.A6.3808.01A	18	77748193	78005105	20	0.0504	NEUTRAL	NA	4	"ADNP2,PARD6G,RBFA,TXNL4A"
TCGA.AA.A01F.01A	18	77802080	78005105	11	-0.315	NEUTRAL	NA	3	"ADNP2,PARD6G,RBFA"
TCGA.AF.3911	18	77869021	78015056	41	-0.4674	NEUTRAL	NA	2	"ADNP2,PARD6G"
TCGA.AA.A00L.01A	18	77917616	78005105	4	-0.2049	NEUTRAL	NA	1	PARD6G
TCGA.CK.4952.01A	19	61628	47960164	6379	-0.1826	NEUTRAL	NA	990	Too-Many
TCGA.DC.6160.01A	19	61628	59746332	8755	-0.0584	NEUTRAL	NA	1373	Too-Many
TCGA.F5.6811.01A	19	61628	63774132	9419	-0.0047	NEUTRAL	NA	1373	Too-Many
TCGA.AG.A01W.01A	19	61702	418602	36	0.1892	NEUTRAL	NA	6	"C2CD4C,MIER2,OR4F17,PPAP2C,SHC2,THEG"
TCGA.AG.A036.01A	19	61702	63774163	9246	-0.1685	NEUTRAL	NA	1373	Too-Many
TCGA.AG.3909.01A	19	110628	307102	7	0.2011	NEUTRAL	NA	3	"MIER2,OR4F17,PPAP2C"
TCGA.AA.A017.01A	19	110628	325572	11	-0.225	NEUTRAL	NA	3	"MIER2,OR4F17,PPAP2C"
TCGA.AA.A024.01A	19	110628	362152	18	-0.0432	NEUTRAL	NA	4	"MIER2,OR4F17,PPAP2C,THEG"
TCGA.AG.3906.01A	19	110628	372568	21	-0.0597	NEUTRAL	NA	4	"MIER2,OR4F17,PPAP2C,THEG"
TCGA.AG.3891.01A	19	110628	607917	43	-0.136	NEUTRAL	NA	13	"BSG,C2CD4C,CDC34,GZMM,HCN2,MADCAM1,MIER2,ODF3L2,OR4F17,PPAP2C,SHC2,THEG,TPGS1"
TCGA.AA.A00K.01A	19	110628	756926	59	-0.1093	NEUTRAL	NA	20	"BSG,C2CD4C,CDC34,FGF22,FSTL3,GZMM,HCN2,MADCAM1,MIER2,MISP,ODF3L2,OR4F17,PALM,POLRMT,PPAP2C,PRSS57,RNF126,SHC2,THEG,TPGS1"
TCGA.AG.4009.01A	19	110628	763445	65	-0.0884	NEUTRAL	NA	20	"BSG,C2CD4C,CDC34,FGF22,FSTL3,GZMM,HCN2,MADCAM1,MIER2,MISP,ODF3L2,OR4F17,PALM,POLRMT,PPAP2C,PRSS57,RNF126,SHC2,THEG,TPGS1"
TCGA.AG.A016.01A	19	110628	960031	61	-0.0038	NEUTRAL	NA	30	"ARID3A,AZU1,BSG,C2CD4C,CDC34,CFD,ELANE,FGF22,FSTL3,GZMM,HCN2,KISS1R,LPPR3,MADCAM1,MED16,MIER2,MISP,ODF3L2,OR4F17,PALM,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SHC2,THEG,TPGS1"
TCGA.AA.3939.01A	19	110628	1116781	222	-0.0524	NEUTRAL	NA	39	"ABCA7,ARID3A,AZU1,BSG,C2CD4C,CDC34,CFD,CNN2,ELANE,FGF22,FSTL3,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MIER2,MISP,ODF3L2,OR4F17,PALM,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SBNO2,SHC2,THEG,TMEM259,TPGS1,WDR18"
TCGA.AA.A00D.01A	19	110628	1299775	123	0.3677	NEUTRAL	NA	46	"ABCA7,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,EFNA2,ELANE,FGF22,FSTL3,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MIDN,MIER2,MISP,ODF3L2,OR4F17,PALM,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SBNO2,SHC2,STK11,THEG,TMEM259,TPGS1,WDR18"
TCGA.AA.A00N.01A	19	110628	1299775	322	-0.4283	NEUTRAL	NA	46	"ABCA7,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,EFNA2,ELANE,FGF22,FSTL3,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MIDN,MIER2,MISP,ODF3L2,OR4F17,PALM,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SBNO2,SHC2,STK11,THEG,TMEM259,TPGS1,WDR18"
TCGA.CK.5914.01A	19	110628	1299775	317	-0.1137	NEUTRAL	NA	46	"ABCA7,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,EFNA2,ELANE,FGF22,FSTL3,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MIDN,MIER2,MISP,ODF3L2,OR4F17,PALM,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SBNO2,SHC2,STK11,THEG,TMEM259,TPGS1,WDR18"
TCGA.AA.A02E.01A	19	110628	1615658	128	-0.5028	NEUTRAL	NA	61	"ABCA7,ADAMTSL5,APC2,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf25,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MUM1,NDUFS7,ODF3L2,OR4F17,PALM,PCSK4,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,RNF126,RPS15,SBNO2,SHC2,STK11,TCF3,THEG,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.AG.A015.01A	19	110628	2129039	177	-0.1364	NEUTRAL	NA	74	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,AP3D1,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,IZUMO4,KISS1R,KLF16,LPPR3,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MKNK2,MOB3A,MUM1,NDUFS7,ODF3L2,ONECUT3,OR4F17,PALM,PCSK4,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SHC2,STK11,TCF3,THEG,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.AA.3967.01A	19	110628	2334553	401	-0.0449	NEUTRAL	NA	84	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,AMH,AP3D1,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C19orf35,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,DOT1L,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,IZUMO4,JSRP1,KISS1R,KLF16,LINGO3,LPPR3,LSM7,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MKNK2,MOB3A,MUM1,NDUFS7,OAZ1,ODF3L2,ONECUT3,OR4F17,PALM,PCSK4,PLEKHJ1,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SF3A2,SHC2,SPPL2B,STK11,TCF3,THEG,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.AA.3861.01A	19	110628	2832284	429	-0.4515	NEUTRAL	NA	94	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,AMH,AP3D1,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C19orf35,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,DIRAS1,DOT1L,EFNA2,ELANE,FGF22,FSTL3,GADD45B,GAMT,GNG7,GPX4,GRIN3B,GZMM,HCN2,HMHA1,IZUMO4,JSRP1,KISS1R,KLF16,LINGO3,LMNB2,LPPR3,LSM7,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MKNK2,MOB3A,MUM1,NDUFS7,OAZ1,ODF3L2,ONECUT3,OR4F17,PALM,PCSK4,PLEKHJ1,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SF3A2,SGTA,SHC2,SLC39A3,SPPL2B,STK11,TCF3,THEG,THOP1,TIMM13,TMEM259,TMPRSS9,TPGS1,UQCR11,WDR18,ZNF554"
TCGA.AA.A00L.01A	19	110628	2850533	342	0.2185	NEUTRAL	NA	95	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,AMH,AP3D1,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C19orf35,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,DIRAS1,DOT1L,EFNA2,ELANE,FGF22,FSTL3,GADD45B,GAMT,GNG7,GPX4,GRIN3B,GZMM,HCN2,HMHA1,IZUMO4,JSRP1,KISS1R,KLF16,LINGO3,LMNB2,LPPR3,LSM7,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MKNK2,MOB3A,MUM1,NDUFS7,OAZ1,ODF3L2,ONECUT3,OR4F17,PALM,PCSK4,PLEKHJ1,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SF3A2,SGTA,SHC2,SLC39A3,SPPL2B,STK11,TCF3,THEG,THOP1,TIMM13,TMEM259,TMPRSS9,TPGS1,UQCR11,WDR18,ZNF554,ZNF555"
TCGA.AA.A01F.01A	19	110628	4175006	458	0.2299	NEUTRAL	NA	132	Too-Many
TCGA.AA.3862.01A	19	110628	4186339	740	-0.3997	NEUTRAL	NA	133	Too-Many
TCGA.AG.A02X.01A	19	110628	4447488	507	-0.1284	NEUTRAL	NA	143	Too-Many
TCGA.AF.3914.01A	19	110628	4529107	792	-0.492	NEUTRAL	NA	146	Too-Many
TCGA.AG.3611.01A	19	110628	5137931	611	-0.1181	NEUTRAL	NA	158	Too-Many
TCGA.AA.A01I.01A	19	110628	5616095	537	-0.3749	NEUTRAL	NA	161	Too-Many
TCGA.A6.3810.01A	19	110628	5720695	1294	-0.1631	NEUTRAL	NA	167	Too-Many
TCGA.AA.3509.01A	19	110628	5720695	1280	-0.1486	NEUTRAL	NA	167	Too-Many
TCGA.AZ.4684.01A	19	110628	5720695	1280	-0.2417	NEUTRAL	NA	167	Too-Many
TCGA.AA.A004.01A	19	110628	7697258	735	-0.1188	NEUTRAL	NA	216	Too-Many
TCGA.AG.A011.01A	19	110628	7697258	903	0.0768	NEUTRAL	NA	216	Too-Many
TCGA.AA.3930.01A	19	110628	7698267	1478	0.0847	NEUTRAL	NA	216	Too-Many
TCGA.AA.A00A.01A	19	110628	8503244	994	0.3223	NEUTRAL	NA	243	Too-Many
TCGA.AG.A01L.01A	19	110628	8933219	1143	0.1128	NEUTRAL	NA	251	Too-Many
TCGA.AG.A00C.01A	19	110628	8962277	1235	0.2204	NEUTRAL	NA	253	Too-Many
TCGA.CK.4948.01B	19	110628	9007439	1973	-0.3693	NEUTRAL	NA	253	Too-Many
TCGA.AG.A014.01A	19	110628	9678704	1248	-0.2842	NEUTRAL	NA	269	Too-Many
TCGA.DM.A28M.01A	19	110628	12511782	2704	-0.1318	NEUTRAL	NA	354	Too-Many
TCGA.AA.A029.01A	19	110628	17351450	2360	-0.0447	NEUTRAL	NA	476	Too-Many
TCGA.AY.A54L.01A	19	110628	19466458	4203	-0.0699	NEUTRAL	NA	549	Too-Many
TCGA.AG.A025.01A	19	110628	19789953	3254	-0.3016	NEUTRAL	NA	559	Too-Many
TCGA.AA.3980.01A	19	110628	24310438	4292	0.3307	NEUTRAL	NA	591	Too-Many
TCGA.AH.6549.01A	19	110628	30017435	4451	-0.3445	NEUTRAL	NA	592	Too-Many
TCGA.AA.A01D.01A	19	110628	40093135	3712	-0.4439	NEUTRAL	NA	775	Too-Many
TCGA.CM.4750.01A	19	110628	43016461	6362	-0.014	NEUTRAL	NA	855	Too-Many
TCGA.AA.A00J.01A	19	110628	44012870	4653	0.2024	NEUTRAL	NA	871	Too-Many
TCGA.AG.A00H.01A	19	110628	47503561	5417	-0.1593	NEUTRAL	NA	978	Too-Many
TCGA.AG.A01J.01A	19	110628	49474145	5631	-0.2218	NEUTRAL	NA	1042	Too-Many
TCGA.AA.3815.01A	19	110628	59082320	8891	0.0803	NEUTRAL	NA	1373	Too-Many
TCGA.AA.A01C.01A	19	110628	59082320	7672	-0.1957	NEUTRAL	NA	1373	Too-Many
TCGA.AA.A01K.01A	19	110628	59082320	7029	-0.1926	NEUTRAL	NA	1373	Too-Many
TCGA.AA.A02H.01A	19	110628	59082320	6976	-0.1486	NEUTRAL	NA	1373	Too-Many
TCGA.AA.A02J.01A	19	110628	59082320	6438	-0.1563	NEUTRAL	NA	1373	Too-Many
TCGA.AA.A02R.01A	19	110628	59082320	6529	-0.0755	NEUTRAL	NA	1373	Too-Many
TCGA.AA.A02W.01A	19	110628	59082320	7214	-0.2528	NEUTRAL	NA	1373	Too-Many
TCGA.AG.A008.01A	19	110628	59082320	7887	0.174	NEUTRAL	NA	1373	Too-Many
TCGA.AG.A01N.01A	19	110628	59082320	7566	-0.128	NEUTRAL	NA	1373	Too-Many
TCGA.AG.A023.01A	19	110628	59082320	7181	-0.2075	NEUTRAL	NA	1373	Too-Many
TCGA.AG.A02G.01A	19	110628	59082320	7518	-0.2521	NEUTRAL	NA	1373	Too-Many
TCGA.AG.A032.01A	19	110628	59082320	6791	0.2453	NEUTRAL	NA	1373	Too-Many
TCGA.CM.4744.01A	19	110628	59082320	9462	-0.0207	NEUTRAL	NA	1373	Too-Many
TCGA.CM.6165.01A	19	110628	59082320	9471	-0.1356	NEUTRAL	NA	1373	Too-Many
TCGA.DM.A282.01A	19	110628	59082320	9434	0.0016	NEUTRAL	NA	1373	Too-Many
TCGA.AA.A02K.01A	19	110702	617239	68	0.1113	NEUTRAL	NA	14	"BSG,C2CD4C,CDC34,GZMM,HCN2,MADCAM1,MIER2,ODF3L2,OR4F17,POLRMT,PPAP2C,SHC2,THEG,TPGS1"
TCGA.AM.5820	19	260969	277775	5	0.179	NEUTRAL	NA	0	None
TCGA.A6.5659	19	260969	419497	28	0.2885	NEUTRAL	NA	5	"C2CD4C,MIER2,PPAP2C,SHC2,THEG"
TCGA.CI.6624	19	260969	494056	39	-0.2134	NEUTRAL	NA	6	"C2CD4C,MIER2,ODF3L2,PPAP2C,SHC2,THEG"
TCGA.F4.6461	19	260969	988135	72	-0.0735	NEUTRAL	NA	30	"ARID3A,AZU1,BSG,C2CD4C,CDC34,CFD,ELANE,FGF22,FSTL3,GZMM,HCN2,KISS1R,LPPR3,MADCAM1,MED16,MIER2,MISP,ODF3L2,PALM,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SHC2,THEG,TPGS1,WDR18"
TCGA.T9.A92H	19	260969	1014376	75	0.0186	NEUTRAL	NA	32	"ARID3A,AZU1,BSG,C2CD4C,CDC34,CFD,ELANE,FGF22,FSTL3,GRIN3B,GZMM,HCN2,KISS1R,LPPR3,MADCAM1,MED16,MIER2,MISP,ODF3L2,PALM,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SHC2,THEG,TMEM259,TPGS1,WDR18"
TCGA.AA.3556	19	260969	1054059	78	0.0437	NEUTRAL	NA	34	"ABCA7,ARID3A,AZU1,BSG,C2CD4C,CDC34,CFD,CNN2,ELANE,FGF22,FSTL3,GRIN3B,GZMM,HCN2,KISS1R,LPPR3,MADCAM1,MED16,MIER2,MISP,ODF3L2,PALM,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SHC2,THEG,TMEM259,TPGS1,WDR18"
TCGA.EF.5830	19	260969	1357829	106	0.3043	NEUTRAL	NA	46	"ABCA7,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,EFNA2,ELANE,FGF22,FSTL3,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MIDN,MIER2,MISP,MUM1,ODF3L2,PALM,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SBNO2,SHC2,STK11,THEG,TMEM259,TPGS1,WDR18"
TCGA.AA.3979	19	260969	1539781	124	0.0934	NEUTRAL	NA	56	"ABCA7,ADAMTSL5,APC2,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf25,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MIDN,MIER2,MISP,MUM1,NDUFS7,ODF3L2,PALM,PCSK4,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,RNF126,RPS15,SBNO2,SHC2,STK11,THEG,TMEM259,TPGS1,WDR18"
TCGA.DC.4749	19	260969	2268054	199	0.2719	NEUTRAL	NA	78	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,AMH,AP3D1,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,DOT1L,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,IZUMO4,JSRP1,KISS1R,KLF16,LPPR3,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MKNK2,MOB3A,MUM1,NDUFS7,ODF3L2,ONECUT3,PALM,PCSK4,PLEKHJ1,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SF3A2,SHC2,STK11,TCF3,THEG,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.AA.3660	19	260969	3425080	381	0.2904	NEUTRAL	NA	106	Too-Many
TCGA.AA.3966	19	260969	3425080	381	0.1507	NEUTRAL	NA	106	Too-Many
TCGA.A6.2674	19	260969	3842326	418	-0.4376	NEUTRAL	NA	122	Too-Many
TCGA.CM.6679	19	260969	4312102	460	-0.36845	NEUTRAL	NA	137	Too-Many
TCGA.G4.6322	19	260969	4375672	464	-0.0848	NEUTRAL	NA	140	Too-Many
TCGA.DC.6158	19	260969	4755177	508	-0.3499	NEUTRAL	NA	151	Too-Many
TCGA.AA.3712	19	260969	4912324	530	-0.1178	NEUTRAL	NA	156	Too-Many
TCGA.D5.6529	19	260969	4921892	533	-0.2708	NEUTRAL	NA	156	Too-Many
TCGA.AD.6901	19	260969	5792473	694	-0.3164	NEUTRAL	NA	168	Too-Many
TCGA.CL.5918	19	260969	6207736	783	0.2627	NEUTRAL	NA	178	Too-Many
TCGA.AZ.6606	19	260969	6453816	826	0.2362	NEUTRAL	NA	187	Too-Many
TCGA.AA.3869	19	260969	7758338	1123	-0.475	NEUTRAL	NA	220	Too-Many
TCGA.AG.3901	19	260969	7783573	1127	-0.0528	NEUTRAL	NA	220	Too-Many
TCGA.AA.3693	19	260969	7931524	1184	0.041	NEUTRAL	NA	224	Too-Many
TCGA.AA.3872	19	260969	8103880	1193	-0.2746	NEUTRAL	NA	232	Too-Many
TCGA.AF.2689	19	260969	8122736	1195	-0.0586	NEUTRAL	NA	233	Too-Many
TCGA.AA.3844	19	260969	8786623	1296	0.3172	NEUTRAL	NA	247	Too-Many
TCGA.A6.3807	19	260969	9978465	1546	-0.2686	NEUTRAL	NA	276	Too-Many
TCGA.AA.3549	19	260969	10137662	1591	0.1472	NEUTRAL	NA	278	Too-Many
TCGA.DM.A0XD	19	260969	11163561	1717	-0.0033	NEUTRAL	NA	313	Too-Many
TCGA.F4.6459	19	260969	12480036	1957	-0.0748	NEUTRAL	NA	352	Too-Many
TCGA.AA.3841	19	260969	12586503	1984	-0.2677	NEUTRAL	NA	355	Too-Many
TCGA.AA.3842	19	260969	13102119	2025	-0.4008	NEUTRAL	NA	382	Too-Many
TCGA.AY.6196	19	260969	14384735	2177	-0.2296	NEUTRAL	NA	408	Too-Many
TCGA.NH.A8F7	19	260969	14557820	2216	0.3198	NEUTRAL	NA	411	Too-Many
TCGA.F4.6704	19	260969	15031833	2360	-0.0584	NEUTRAL	NA	424	Too-Many
TCGA.AF.2692	19	260969	15383515	2454	-0.3637	NEUTRAL	NA	434	Too-Many
TCGA.EI.6885	19	260969	15504765	2461	-0.3137	NEUTRAL	NA	436	Too-Many
TCGA.AG.3594	19	260969	15934598	2600	0.0565	NEUTRAL	NA	447	Too-Many
TCGA.F5.6812	19	260969	17670974	2948	-0.024	NEUTRAL	NA	492	Too-Many
TCGA.EI.6881	19	260969	17686780	2951	-0.0297	NEUTRAL	NA	492	Too-Many
TCGA.DC.6157	19	260969	19856489	3242	0.0591	NEUTRAL	NA	559	Too-Many
TCGA.CI.6619	19	260969	20240048	3349	-0.1255	NEUTRAL	NA	564	Too-Many
TCGA.CM.6172	19	260969	20594100	3401	-0.061	NEUTRAL	NA	565	Too-Many
TCGA.A6.6782	19	260969	20594142	3388	0.1391	NEUTRAL	NA	565	Too-Many
TCGA.DC.5337	19	260969	20594675	3380	-0.0451	NEUTRAL	NA	565	Too-Many
TCGA.AG.3725	19	260969	20896350	3431	-0.2774	NEUTRAL	NA	567	Too-Many
TCGA.AF.A56K	19	260969	21155592	3478	0.0778	NEUTRAL	NA	568	Too-Many
TCGA.A6.6653	19	260969	21400094	3531	-0.0324	NEUTRAL	NA	571	Too-Many
TCGA.CL.4957	19	260969	21571262	3571	-0.0396	NEUTRAL	NA	572	Too-Many
TCGA.F4.6460	19	260969	21635354	3581	-0.0297	NEUTRAL	NA	573	Too-Many
TCGA.AA.3941	19	260969	21777705	3602	0.1525	NEUTRAL	NA	574	Too-Many
TCGA.AF.6672	19	260969	22270215	3717	-0.0038	NEUTRAL	NA	578	Too-Many
TCGA.G4.6323	19	260969	22776389	3844	-0.0187	NEUTRAL	NA	581	Too-Many
TCGA.4T.AA8H	19	260969	22897566	3856	0.3441	NEUTRAL	NA	582	Too-Many
TCGA.CI.6621	19	260969	23382989	3945	0.143	NEUTRAL	NA	585	Too-Many
TCGA.AA.3851	19	260969	23393285	3954	-0.0265	NEUTRAL	NA	585	Too-Many
TCGA.CM.4746	19	260969	23964067	4074	-0.0076	NEUTRAL	NA	588	Too-Many
TCGA.AU.3779	19	260969	24373082	4191	-0.0645	NEUTRAL	NA	590	Too-Many
TCGA.AG.3882	19	260969	24455962	4201	-0.0436	NEUTRAL	NA	590	Too-Many
TCGA.CA.5797	19	260969	24487681	4199	-0.2641	NEUTRAL	NA	590	Too-Many
TCGA.DC.6155	19	260969	24487681	4172	-0.5037	NEUTRAL	NA	590	Too-Many
TCGA.F4.6855	19	260969	24503984	4181	0.0173	NEUTRAL	NA	590	Too-Many
TCGA.5M.AATE	19	260969	24505636	4199	-0.0406	NEUTRAL	NA	590	Too-Many
TCGA.AA.3502	19	260969	24505636	4195	-0.0511	NEUTRAL	NA	590	Too-Many
TCGA.AD.6888	19	260969	24505636	4197	-0.0792	NEUTRAL	NA	590	Too-Many
TCGA.AD.6965	19	260969	24505636	4187	-0.2932	NEUTRAL	NA	590	Too-Many
TCGA.AF.3913	19	260969	24505636	4173	0.0119	NEUTRAL	NA	590	Too-Many
TCGA.AY.A69D	19	260969	24505636	4168	-0.0004	NEUTRAL	NA	590	Too-Many
TCGA.D5.6537	19	260969	24505636	4179	-0.0831	NEUTRAL	NA	590	Too-Many
TCGA.D5.6928	19	260969	24505636	4186	-0.0339	NEUTRAL	NA	590	Too-Many
TCGA.D5.6931	19	260969	24505636	4183	-0.0395	NEUTRAL	NA	590	Too-Many
TCGA.DM.A0X9	19	260969	24505636	4203	-0.0432	NEUTRAL	NA	590	Too-Many
TCGA.G4.6297	19	260969	24505636	4201	-0.1783	NEUTRAL	NA	590	Too-Many
TCGA.AA.3955	19	260969	27960005	4206	0.1361	NEUTRAL	NA	590	Too-Many
TCGA.A6.2686	19	260969	28209010	4200	0.0584	NEUTRAL	NA	590	Too-Many
TCGA.AF.2690	19	260969	28372949	4252	0.3513	NEUTRAL	NA	590	Too-Many
TCGA.AH.6644	19	260969	28530245	4318	-0.0636	NEUTRAL	NA	590	Too-Many
TCGA.A6.6648	19	260969	28678496	4392	0.158	NEUTRAL	NA	590	Too-Many
TCGA.AA.3855	19	260969	28704089	4382	0.0297	NEUTRAL	NA	590	Too-Many
TCGA.A6.5662	19	260969	28712129	4394	0.1195	NEUTRAL	NA	590	Too-Many
TCGA.AA.3560	19	260969	30530934	5098	-0.0235	NEUTRAL	NA	597	Too-Many
TCGA.AG.4015	19	260969	30670437	5115	-0.4483	NEUTRAL	NA	597	Too-Many
TCGA.F4.6463	19	260969	31339329	5354	-0.0921	NEUTRAL	NA	598	Too-Many
TCGA.AA.3522	19	260969	32422855	5707	-0.034	NEUTRAL	NA	600	Too-Many
TCGA.AF.2687	19	260969	32708115	5819	-0.2614	NEUTRAL	NA	600	Too-Many
TCGA.AG.A01Y	19	260969	32864564	5851	-0.111	NEUTRAL	NA	601	Too-Many
TCGA.D5.6533	19	260969	33789009	6077	-0.164	NEUTRAL	NA	615	Too-Many
TCGA.AA.3529	19	260969	34427822	6310	-0.0155	NEUTRAL	NA	620	Too-Many
TCGA.CM.5862	19	260969	35049493	6436	0.2588	NEUTRAL	NA	626	Too-Many
TCGA.AG.3591	19	260969	35085871	6465	0.1209	NEUTRAL	NA	627	Too-Many
TCGA.EI.6883	19	260969	36204689	6727	0.3757	NEUTRAL	NA	661	Too-Many
TCGA.G4.6299	19	260969	36547529	6787	0.2104	NEUTRAL	NA	684	Too-Many
TCGA.AA.3519	19	260969	36690873	6803	-0.01	NEUTRAL	NA	690	Too-Many
TCGA.G5.6572	19	260969	36752220	6797	-0.0272	NEUTRAL	NA	691	Too-Many
TCGA.EI.6511	19	260969	36871729	6819	-0.0266	NEUTRAL	NA	692	Too-Many
TCGA.DM.A1D9	19	260969	38154701	6983	-0.0096	NEUTRAL	NA	717	Too-Many
TCGA.CA.6719	19	260969	40542737	7449	0.2113	NEUTRAL	NA	785	Too-Many
TCGA.QL.A97D	19	260969	40611152	7474	0.1423	NEUTRAL	NA	786	Too-Many
TCGA.AF.5654	19	260969	42031591	7667	-0.0024	NEUTRAL	NA	825	Too-Many
TCGA.A6.4105	19	260969	42058024	7704	0.2531	NEUTRAL	NA	826	Too-Many
TCGA.CM.5341	19	260969	42688686	7785	0.0188	NEUTRAL	NA	841	Too-Many
TCGA.AG.A026	19	260969	43290772	7836	0.2795	NEUTRAL	NA	857	Too-Many
TCGA.AA.3877	19	260969	43438749	7866	0.0318	NEUTRAL	NA	860	Too-Many
TCGA.AF.A56L	19	260969	43537377	7847	0.2329	NEUTRAL	NA	861	Too-Many
TCGA.EI.6506	19	260969	43794152	7911	0.1269	NEUTRAL	NA	865	Too-Many
TCGA.AG.3732	19	260969	45653751	8361	-0.0636	NEUTRAL	NA	924	Too-Many
TCGA.EI.7002	19	260969	46080681	8424	0.3158	NEUTRAL	NA	939	Too-Many
TCGA.A6.5667	19	260969	46149617	8451	0.2466	NEUTRAL	NA	941	Too-Many
TCGA.D5.6536	19	260969	47042335	8604	-0.0518	NEUTRAL	NA	967	Too-Many
TCGA.AG.3731	19	260969	47602576	8674	0.0051	NEUTRAL	NA	980	Too-Many
TCGA.G4.6303	19	260969	48552660	8845	-0.0342	NEUTRAL	NA	1003	Too-Many
TCGA.QG.A5Z1	19	260969	48880182	8874	-0.0539	NEUTRAL	NA	1011	Too-Many
TCGA.DC.6154	19	260969	48954570	8947	0.3726	NEUTRAL	NA	1014	Too-Many
TCGA.G4.6317	19	260969	49158137	8993	-0.3348	NEUTRAL	NA	1024	Too-Many
TCGA.A6.6138	19	260969	50079450	9128	-0.0118	NEUTRAL	NA	1073	Too-Many
TCGA.AH.6544	19	260969	51011872	9260	-0.0079	NEUTRAL	NA	1107	Too-Many
TCGA.DM.A1DA	19	260969	51103360	9287	-0.1451	NEUTRAL	NA	1109	Too-Many
TCGA.AA.3867	19	260969	51705038	9474	0.0286	NEUTRAL	NA	1134	Too-Many
TCGA.CK.6746	19	260969	53679948	10087	0.0022	NEUTRAL	NA	1190	Too-Many
TCGA.AA.3870	19	260969	53719249	10116	0.1146	NEUTRAL	NA	1190	Too-Many
TCGA.A6.2678	19	260969	54459883	10333	-0.017	NEUTRAL	NA	1204	Too-Many
TCGA.5M.AAT4	19	260969	54686321	10359	-0.0094	NEUTRAL	NA	1216	Too-Many
TCGA.AY.5543	19	260969	55252384	10427	-0.0397	NEUTRAL	NA	1237	Too-Many
TCGA.CI.6622	19	260969	55300068	10492	-0.0239	NEUTRAL	NA	1238	Too-Many
TCGA.NH.A50U	19	260969	55326612	10515	-0.4442	NEUTRAL	NA	1239	Too-Many
TCGA.AG.3898	19	260969	56306401	10630	0.0687	NEUTRAL	NA	1289	Too-Many
TCGA.EI.7004	19	260969	56949966	10912	0.0169	NEUTRAL	NA	1300	Too-Many
TCGA.AA.3667	19	260969	57100893	11013	0.0465	NEUTRAL	NA	1304	Too-Many
TCGA.AA.3673	19	260969	57466592	11124	0.022	NEUTRAL	NA	1309	Too-Many
TCGA.A6.6649	19	260969	58560749	11437	-0.0574	NEUTRAL	NA	1349	Too-Many
TCGA.AY.4070	19	260969	59058082	11471	-0.0394	NEUTRAL	NA	1369	Too-Many
TCGA.F4.6806	19	260969	59093463	11502	-0.0353	NEUTRAL	NA	1372	Too-Many
TCGA.3L.AA1B	19	260969	59095125	11548	-0.0529	NEUTRAL	NA	1372	Too-Many
TCGA.5M.AAT5	19	260969	59095125	11540	0.0106	NEUTRAL	NA	1372	Too-Many
TCGA.5M.AAT6	19	260969	59095125	11542	-1.00E-04	NEUTRAL	NA	1372	Too-Many
TCGA.5M.AATA	19	260969	59095125	11549	0.0045	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2671	19	260969	59095125	11522	0.0261	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2675	19	260969	59095125	11485	0.1696	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2677	19	260969	59095125	10766	-0.0693	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2679	19	260969	59095125	11528	0.119	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2680	19	260969	59095125	11526	-0.0132	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2681	19	260969	59095125	11539	0.3336	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2682	19	260969	59095125	11376	0.0219	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2683	19	260969	59095125	11540	0.2591	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2684	19	260969	59095125	10760	-0.0454	NEUTRAL	NA	1372	Too-Many
TCGA.A6.2685	19	260969	59095125	11511	0.0125	NEUTRAL	NA	1372	Too-Many
TCGA.A6.3809	19	260969	59095125	10787	-0.0346	NEUTRAL	NA	1372	Too-Many
TCGA.A6.4107	19	260969	59095125	11538	-0.0527	NEUTRAL	NA	1372	Too-Many
TCGA.A6.5656	19	260969	59095125	11515	-0.0226	NEUTRAL	NA	1372	Too-Many
TCGA.A6.5657	19	260969	59095125	11526	0.1322	NEUTRAL	NA	1372	Too-Many
TCGA.A6.5660	19	260969	59095125	11527	0	NEUTRAL	NA	1372	Too-Many
TCGA.A6.5664	19	260969	59095125	11518	-0.0134	NEUTRAL	NA	1372	Too-Many
TCGA.A6.5666	19	260969	59095125	11550	0.0478	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6137	19	260969	59095125	11560	-0.0295	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6140	19	260969	59095125	11562	-0.0254	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6141	19	260969	59095125	11551	-0.0546	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6650	19	260969	59095125	10764	-0.0084	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6651	19	260969	59095125	11525	0.3009	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6652	19	260969	59095125	11563	-0.0439	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6654	19	260969	59095125	11538	0.2948	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6780	19	260969	59095125	11528	0.0253	NEUTRAL	NA	1372	Too-Many
TCGA.A6.6781	19	260969	59095125	10743	-0.0716	NEUTRAL	NA	1372	Too-Many
TCGA.A6.A565	19	260969	59095125	11480	-0.0645	NEUTRAL	NA	1372	Too-Many
TCGA.A6.A566	19	260969	59095125	11465	-0.0106	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3488	19	260969	59095125	11538	0.047	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3489	19	260969	59095125	11511	0.0248	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3492	19	260969	59095125	11539	0.0276	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3494	19	260969	59095125	11543	-0.041	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3495	19	260969	59095125	11540	0.0222	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3496	19	260969	59095125	11515	0.0584	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3510	19	260969	59095125	11530	0.0089	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3511	19	260969	59095125	11532	0.0078	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3514	19	260969	59095125	11546	0.0569	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3516	19	260969	59095125	11516	0.0506	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3517	19	260969	59095125	11539	0.0143	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3518	19	260969	59095125	11486	0.0247	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3524	19	260969	59095125	11529	-0.0311	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3526	19	260969	59095125	11546	0.0053	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3527	19	260969	59095125	11534	0.0093	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3530	19	260969	59095125	11528	0.2365	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3531	19	260969	59095125	11544	0.0264	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3532	19	260969	59095125	11540	-0.0705	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3534	19	260969	59095125	11546	-0.0012	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3543	19	260969	59095125	11541	0.0578	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3544	19	260969	59095125	11561	0.0711	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3548	19	260969	59095125	11559	0.0146	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3555	19	260969	59095125	11554	0.0244	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3558	19	260969	59095125	11544	0.051	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3561	19	260969	59095125	11550	0.0324	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3655	19	260969	59095125	11558	-0.0151	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3663	19	260969	59095125	11533	0.0141	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3664	19	260969	59095125	11563	0.0376	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3675	19	260969	59095125	11565	0.0304	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3678	19	260969	59095125	11564	0.0341	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3679	19	260969	59095125	11565	0.0117	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3680	19	260969	59095125	11562	0.0507	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3681	19	260969	59095125	11560	0.0549	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3684	19	260969	59095125	11563	0.0343	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3685	19	260969	59095125	11563	0.1621	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3688	19	260969	59095125	11565	0.0592	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3692	19	260969	59095125	11559	-0.1851	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3695	19	260969	59095125	11567	0.0682	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3696	19	260969	59095125	11567	0.0038	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3697	19	260969	59095125	11542	-0.0197	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3710	19	260969	59095125	11549	0.0146	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3713	19	260969	59095125	11541	-0.0457	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3715	19	260969	59095125	11563	0.0625	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3811	19	260969	59095125	11529	0.2943	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3812	19	260969	59095125	11564	0.3172	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3814	19	260969	59095125	11565	0.3587	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3819	19	260969	59095125	11565	0.0567	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3821	19	260969	59095125	11532	-0.015	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3831	19	260969	59095125	11546	0.0411	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3833	19	260969	59095125	11566	-0.0215	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3837	19	260969	59095125	11566	0.025	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3845	19	260969	59095125	11526	0.1013	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3846	19	260969	59095125	11554	0.0615	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3848	19	260969	59095125	11566	0.0556	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3852	19	260969	59095125	11565	-0.0255	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3854	19	260969	59095125	11566	0.2566	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3856	19	260969	59095125	11566	0.0044	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3860	19	260969	59095125	11555	0.0454	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3864	19	260969	59095125	11522	0.1888	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3866	19	260969	59095125	11543	-0.0887	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3875	19	260969	59095125	11566	0.0569	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3947	19	260969	59095125	11526	0.0704	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3949	19	260969	59095125	11551	0.1106	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3950	19	260969	59095125	11549	0.0751	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3956	19	260969	59095125	11547	0.1604	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3968	19	260969	59095125	11553	0.0689	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3971	19	260969	59095125	11552	0.0589	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3972	19	260969	59095125	11549	0.1803	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3973	19	260969	59095125	11552	0.1304	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3975	19	260969	59095125	11541	0.0614	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3976	19	260969	59095125	11552	0.0168	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3977	19	260969	59095125	11513	0.1873	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3984	19	260969	59095125	11533	-0.0014	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3986	19	260969	59095125	11551	0.0839	NEUTRAL	NA	1372	Too-Many
TCGA.AA.3989	19	260969	59095125	11552	0.1437	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A01P	19	260969	59095125	11537	-0.0094	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A01R	19	260969	59095125	11540	0.0101	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A01S	19	260969	59095125	11538	0.00775	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A01T	19	260969	59095125	11535	-0.2291	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A01V	19	260969	59095125	11538	0.0486	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A01X	19	260969	59095125	11525	-0.3281	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A01Z	19	260969	59095125	11537	-0.0051	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A022	19	260969	59095125	11506	-0.0156	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A02Y	19	260969	59095125	11525	-0.0055	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A03F	19	260969	59095125	11537	-0.0122	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A03J	19	260969	59095125	11280	-0.0039	NEUTRAL	NA	1372	Too-Many
TCGA.AD.5900	19	260969	59095125	11535	-0.0457	NEUTRAL	NA	1372	Too-Many
TCGA.AD.6548	19	260969	59095125	11516	-0.0388	NEUTRAL	NA	1372	Too-Many
TCGA.AD.6889	19	260969	59095125	11538	-0.0926	NEUTRAL	NA	1372	Too-Many
TCGA.AD.6890	19	260969	59095125	11544	-0.037	NEUTRAL	NA	1372	Too-Many
TCGA.AD.6895	19	260969	59095125	11540	-0.0827	NEUTRAL	NA	1372	Too-Many
TCGA.AD.6899	19	260969	59095125	11506	0.0778	NEUTRAL	NA	1372	Too-Many
TCGA.AD.6963	19	260969	59095125	11547	-0.0028	NEUTRAL	NA	1372	Too-Many
TCGA.AD.6964	19	260969	59095125	11538	-0.0796	NEUTRAL	NA	1372	Too-Many
TCGA.AD.A5EJ	19	260969	59095125	11494	-0.0399	NEUTRAL	NA	1372	Too-Many
TCGA.AF.2691	19	260969	59095125	11548	0.01	NEUTRAL	NA	1372	Too-Many
TCGA.AF.3911	19	260969	59095125	11548	-0.06	NEUTRAL	NA	1372	Too-Many
TCGA.AF.4110	19	260969	59095125	11552	-0.2554	NEUTRAL	NA	1372	Too-Many
TCGA.AF.6136	19	260969	59095125	11545	-0.0676	NEUTRAL	NA	1372	Too-Many
TCGA.AF.6655	19	260969	59095125	11539	-0.0754	NEUTRAL	NA	1372	Too-Many
TCGA.AF.A56N	19	260969	59095125	11524	0.0106	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3574	19	260969	59095125	11551	0.0445	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3580	19	260969	59095125	11547	0.0407	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3581	19	260969	59095125	11549	0.0032	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3583	19	260969	59095125	11175	0.0266	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3584	19	260969	59095125	11553	-0.0244	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3592	19	260969	59095125	11558	0.3019	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3598	19	260969	59095125	11483	0.0648	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3599	19	260969	59095125	11538	0.0533	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3602	19	260969	59095125	11481	0.0845	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3612	19	260969	59095125	11447	0.0135	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3726	19	260969	59095125	11556	0.0453	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3727	19	260969	59095125	11567	0.0742	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3728	19	260969	59095125	11567	0.0386	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3742	19	260969	59095125	11423	-0.0247	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3878	19	260969	59095125	11554	0.3283	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3881	19	260969	59095125	11555	-0.2182	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3883	19	260969	59095125	11563	0.0352	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3885	19	260969	59095125	11558	0.0121	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3887	19	260969	59095125	11488	-0.0181	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3890	19	260969	59095125	11494	-0.0221	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3892	19	260969	59095125	11494	0.0078	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3894	19	260969	59095125	11497	-0.0042	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3896	19	260969	59095125	11503	0.3768	NEUTRAL	NA	1372	Too-Many
TCGA.AG.3902	19	260969	59095125	11503	0.034	NEUTRAL	NA	1372	Too-Many
TCGA.AG.4008	19	260969	59095125	11448	-0.039	NEUTRAL	NA	1372	Too-Many
TCGA.AG.4021	19	260969	59095125	11523	-0.0588	NEUTRAL	NA	1372	Too-Many
TCGA.AG.4022	19	260969	59095125	11561	-0.0804	NEUTRAL	NA	1372	Too-Many
TCGA.AG.A020	19	260969	59095125	11529	-0.1055	NEUTRAL	NA	1372	Too-Many
TCGA.AG.A02N	19	260969	59095125	11537	0.0065	NEUTRAL	NA	1372	Too-Many
TCGA.AH.6547	19	260969	59095125	11540	-0.0388	NEUTRAL	NA	1372	Too-Many
TCGA.AH.6643	19	260969	59095125	11538	-0.0472	NEUTRAL	NA	1372	Too-Many
TCGA.AH.6897	19	260969	59095125	11525	-0.0067	NEUTRAL	NA	1372	Too-Many
TCGA.AH.6903	19	260969	59095125	11519	-0.0081	NEUTRAL	NA	1372	Too-Many
TCGA.AM.5821	19	260969	59095125	11504	0.0609	NEUTRAL	NA	1372	Too-Many
TCGA.AU.6004	19	260969	59095125	11495	-0.1154	NEUTRAL	NA	1372	Too-Many
TCGA.AY.4071	19	260969	59095125	11463	-0.012	NEUTRAL	NA	1372	Too-Many
TCGA.AY.6197	19	260969	59095125	11226	-0.0299	NEUTRAL	NA	1372	Too-Many
TCGA.AY.6386	19	260969	59095125	11542	-0.0608	NEUTRAL	NA	1372	Too-Many
TCGA.AY.A71X	19	260969	59095125	11541	-0.0726	NEUTRAL	NA	1372	Too-Many
TCGA.AY.A8YK	19	260969	59095125	11530	0.1806	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.4308	19	260969	59095125	11541	-0.0246	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.4315	19	260969	59095125	11533	-0.024	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.4323	19	260969	59095125	11512	0.1277	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.4614	19	260969	59095125	11391	-0.0076	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.4615	19	260969	59095125	11536	0.0061	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.4616	19	260969	59095125	11530	-0.1075	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.4681	19	260969	59095125	11532	0.0116	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.4682	19	260969	59095125	11541	-0.0006	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.5403	19	260969	59095125	11540	-0.0357	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.6598	19	260969	59095125	11560	-0.0501	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.6599	19	260969	59095125	11562	-0.0975	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.6600	19	260969	59095125	11552	-0.0038	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.6601	19	260969	59095125	11554	-0.0127	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.6603	19	260969	59095125	11539	0.0844	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.6605	19	260969	59095125	11518	-0.0239	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.6607	19	260969	59095125	11529	0.04	NEUTRAL	NA	1372	Too-Many
TCGA.AZ.6608	19	260969	59095125	11523	0.012	NEUTRAL	NA	1372	Too-Many
TCGA.BM.6198	19	260969	59095125	11559	-0.00255	NEUTRAL	NA	1372	Too-Many
TCGA.CA.5254	19	260969	59095125	11527	-0.0479	NEUTRAL	NA	1372	Too-Many
TCGA.CA.5255	19	260969	59095125	11521	0.1135	NEUTRAL	NA	1372	Too-Many
TCGA.CA.5256	19	260969	59095125	11442	0	NEUTRAL	NA	1372	Too-Many
TCGA.CA.5796	19	260969	59095125	11531	0.047	NEUTRAL	NA	1372	Too-Many
TCGA.CA.6715	19	260969	59095125	11514	-0.0151	NEUTRAL	NA	1372	Too-Many
TCGA.CA.6716	19	260969	59095125	11536	0.0504	NEUTRAL	NA	1372	Too-Many
TCGA.CA.6717	19	260969	59095125	11518	-0.0465	NEUTRAL	NA	1372	Too-Many
TCGA.CA.6718	19	260969	59095125	11522	-0.0086	NEUTRAL	NA	1372	Too-Many
TCGA.CI.6620	19	260969	59095125	11527	-0.0071	NEUTRAL	NA	1372	Too-Many
TCGA.CI.6623	19	260969	59095125	11546	-0.1352	NEUTRAL	NA	1372	Too-Many
TCGA.CK.4947	19	260969	59095125	11539	-0.0655	NEUTRAL	NA	1372	Too-Many
TCGA.CK.4950	19	260969	59095125	11391	0.2164	NEUTRAL	NA	1372	Too-Many
TCGA.CK.4951	19	260969	59095125	11483	0.0233	NEUTRAL	NA	1372	Too-Many
TCGA.CK.5913	19	260969	59095125	11548	-0.0037	NEUTRAL	NA	1372	Too-Many
TCGA.CK.5915	19	260969	59095125	11530	0.0911	NEUTRAL	NA	1372	Too-Many
TCGA.CK.5916	19	260969	59095125	11521	-0.0392	NEUTRAL	NA	1372	Too-Many
TCGA.CK.6747	19	260969	59095125	11513	-0.0406	NEUTRAL	NA	1372	Too-Many
TCGA.CK.6748	19	260969	59095125	11544	-0.0258	NEUTRAL	NA	1372	Too-Many
TCGA.CK.6751	19	260969	59095125	11505	-0.0151	NEUTRAL	NA	1372	Too-Many
TCGA.CL.5917	19	260969	59095125	11523	-0.0233	NEUTRAL	NA	1372	Too-Many
TCGA.CM.4743	19	260969	59095125	11553	-0.0571	NEUTRAL	NA	1372	Too-Many
TCGA.CM.4747	19	260969	59095125	11534	0.2628	NEUTRAL	NA	1372	Too-Many
TCGA.CM.4748	19	260969	59095125	11540	-0.0008	NEUTRAL	NA	1372	Too-Many
TCGA.CM.4752	19	260969	59095125	11529	0.1272	NEUTRAL	NA	1372	Too-Many
TCGA.CM.5344	19	260969	59095125	11546	-0.0249	NEUTRAL	NA	1372	Too-Many
TCGA.CM.5348	19	260969	59095125	11550	-0.0326	NEUTRAL	NA	1372	Too-Many
TCGA.CM.5349	19	260969	59095125	11553	-0.1109	NEUTRAL	NA	1372	Too-Many
TCGA.CM.5861	19	260969	59095125	11547	-0.0021	NEUTRAL	NA	1372	Too-Many
TCGA.CM.5863	19	260969	59095125	11541	0.2187	NEUTRAL	NA	1372	Too-Many
TCGA.CM.5864	19	260969	59095125	11516	-0.006	NEUTRAL	NA	1372	Too-Many
TCGA.CM.5868	19	260969	59095125	11530	0.0719	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6161	19	260969	59095125	11528	0.1396	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6162	19	260969	59095125	11528	-0.0935	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6163	19	260969	59095125	11523	0.0781	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6164	19	260969	59095125	11535	0.0021	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6166	19	260969	59095125	11555	0.3694	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6167	19	260969	59095125	11547	-0.0349	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6168	19	260969	59095125	11556	-0.0317	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6170	19	260969	59095125	11559	0	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6171	19	260969	59095125	11558	-0.056	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6674	19	260969	59095125	11535	-0.0365	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6675	19	260969	59095125	11537	0.0254	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6676	19	260969	59095125	11527	0.1289	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6677	19	260969	59095125	11511	0.0054	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6678	19	260969	59095125	11529	-0.0063	NEUTRAL	NA	1372	Too-Many
TCGA.CM.6680	19	260969	59095125	11536	-0.0366	NEUTRAL	NA	1372	Too-Many
TCGA.D5.5537	19	260969	59095125	11515	-0.3983	NEUTRAL	NA	1372	Too-Many
TCGA.D5.5538	19	260969	59095125	11536	-0.0488	NEUTRAL	NA	1372	Too-Many
TCGA.D5.5539	19	260969	59095125	11528	0.1339	NEUTRAL	NA	1372	Too-Many
TCGA.D5.5541	19	260969	59095125	11558	-0.0453	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6530	19	260969	59095125	11556	-0.0763	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6531	19	260969	59095125	11556	-0.087	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6532	19	260969	59095125	11547	-0.0319	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6534	19	260969	59095125	11526	0.043	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6535	19	260969	59095125	11555	0.2211	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6538	19	260969	59095125	11548	-0.1018	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6539	19	260969	59095125	11545	-0.0711	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6540	19	260969	59095125	11539	0.0083	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6898	19	260969	59095125	11526	-0.005	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6920	19	260969	59095125	11529	-0.0275	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6923	19	260969	59095125	11522	-0.0164	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6924	19	260969	59095125	11523	-0.0205	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6926	19	260969	59095125	11528	-0.009	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6927	19	260969	59095125	11529	0.0069	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6929	19	260969	59095125	11526	0.2598	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6930	19	260969	59095125	11517	-0.0149	NEUTRAL	NA	1372	Too-Many
TCGA.D5.6932	19	260969	59095125	11526	0.0665	NEUTRAL	NA	1372	Too-Many
TCGA.D5.7000	19	260969	59095125	11474	0	NEUTRAL	NA	1372	Too-Many
TCGA.DC.5869	19	260969	59095125	11515	-0.1546	NEUTRAL	NA	1372	Too-Many
TCGA.DC.6681	19	260969	59095125	11536	-0.0416	NEUTRAL	NA	1372	Too-Many
TCGA.DC.6682	19	260969	59095125	11544	0.0363	NEUTRAL	NA	1372	Too-Many
TCGA.DC.6683	19	260969	59095125	11535	-0.0239	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A0XF	19	260969	59095125	11557	-0.0339	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A1D0	19	260969	59095125	11469	0.0054	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A1D4	19	260969	59095125	11554	-0.0073	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A1D6	19	260969	59095125	11555	-0.0004	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A1D7	19	260969	59095125	11557	0	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A1D8	19	260969	59095125	11542	-0.0364	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A1DB	19	260969	59095125	11554	-0.0042	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A1HB	19	260969	59095125	11216	0.0204	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A280	19	260969	59095125	11541	0.0279	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A285	19	260969	59095125	11533	-0.0655	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A288	19	260969	59095125	11518	0.0062	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A28A	19	260969	59095125	11533	-0.004	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A28C	19	260969	59095125	11546	-0.0512	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A28E	19	260969	59095125	11522	0.0049	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A28F	19	260969	59095125	11533	0.3164	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A28G	19	260969	59095125	11544	0.0321	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A28H	19	260969	59095125	11539	-0.0123	NEUTRAL	NA	1372	Too-Many
TCGA.DM.A28K	19	260969	59095125	11521	-0.0066	NEUTRAL	NA	1372	Too-Many
TCGA.DY.A0XA	19	260969	59095125	11545	-0.0378	NEUTRAL	NA	1372	Too-Many
TCGA.DY.A1DC	19	260969	59095125	11544	-0.0618	NEUTRAL	NA	1372	Too-Many
TCGA.DY.A1DD	19	260969	59095125	11554	-0.0306	NEUTRAL	NA	1372	Too-Many
TCGA.DY.A1H8	19	260969	59095125	11555	-0.0013	NEUTRAL	NA	1372	Too-Many
TCGA.EI.6507	19	260969	59095125	11559	-0.0253	NEUTRAL	NA	1372	Too-Many
TCGA.EI.6508	19	260969	59095125	11555	-0.0431	NEUTRAL	NA	1372	Too-Many
TCGA.EI.6510	19	260969	59095125	11544	-0.039	NEUTRAL	NA	1372	Too-Many
TCGA.EI.6512	19	260969	59095125	11561	0.2605	NEUTRAL	NA	1372	Too-Many
TCGA.EI.6514	19	260969	59095125	11537	0.2214	NEUTRAL	NA	1372	Too-Many
TCGA.EI.6882	19	260969	59095125	11524	-0.0011	NEUTRAL	NA	1372	Too-Many
TCGA.EI.6884	19	260969	59095125	11514	0.0125	NEUTRAL	NA	1372	Too-Many
TCGA.EI.6917	19	260969	59095125	11512	-0.0873	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6569	19	260969	59095125	11562	-0.063	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6570	19	260969	59095125	11558	-0.0531	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6703	19	260969	59095125	11539	0.0418	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6805	19	260969	59095125	11541	-0.0093	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6807	19	260969	59095125	11520	-0.0218	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6808	19	260969	59095125	11536	-0.3359	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6809	19	260969	59095125	11536	-0.003	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6854	19	260969	59095125	11526	-0.0056	NEUTRAL	NA	1372	Too-Many
TCGA.F4.6856	19	260969	59095125	11528	0.0178	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6464	19	260969	59095125	11562	-0.0888	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6465	19	260969	59095125	11563	-0.0625	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6571	19	260969	59095125	11536	-0.1109	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6702	19	260969	59095125	11498	-0.169	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6813	19	260969	59095125	11545	-0.0076	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6814	19	260969	59095125	11528	-0.011	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6861	19	260969	59095125	11515	0.0117	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6863	19	260969	59095125	11524	0.0138	NEUTRAL	NA	1372	Too-Many
TCGA.F5.6864	19	260969	59095125	11526	-0.039	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6293	19	260969	59095125	11543	-0.0724	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6294	19	260969	59095125	11558	-0.0552	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6295	19	260969	59095125	11560	-0.4136	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6298	19	260969	59095125	11556	-0.0109	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6302	19	260969	59095125	11558	-0.022	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6304	19	260969	59095125	11528	-0.052	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6306	19	260969	59095125	11550	-0.0965	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6307	19	260969	59095125	11558	-0.0364	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6309	19	260969	59095125	11540	0.0008	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6310	19	260969	59095125	11549	0.1719	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6311	19	260969	59095125	11559	0.212	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6314	19	260969	59095125	11562	0.0389	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6315	19	260969	59095125	11561	-0.0002	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6320	19	260969	59095125	11561	0.2089	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6321	19	260969	59095125	11559	0.0002	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6586	19	260969	59095125	11555	-0.0585	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6588	19	260969	59095125	11554	-0.0866	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6625	19	260969	59095125	11554	-0.0058	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6626	19	260969	59095125	11560	0.0008	NEUTRAL	NA	1372	Too-Many
TCGA.G4.6628	19	260969	59095125	11532	0.0038	NEUTRAL	NA	1372	Too-Many
TCGA.G5.6233	19	260969	59095125	11559	-0.2037	NEUTRAL	NA	1372	Too-Many
TCGA.G5.6235	19	260969	59095125	11563	-0.0644	NEUTRAL	NA	1372	Too-Many
TCGA.G5.6641	19	260969	59095125	11535	-0.0569	NEUTRAL	NA	1372	Too-Many
TCGA.NH.A50T	19	260969	59095125	11470	-0.0515	NEUTRAL	NA	1372	Too-Many
TCGA.NH.A50V	19	260969	59095125	11485	-0.0512	NEUTRAL	NA	1372	Too-Many
TCGA.NH.A5IV	19	260969	59095125	11524	0.0548	NEUTRAL	NA	1372	Too-Many
TCGA.NH.A6GA	19	260969	59095125	11545	-0.0162	NEUTRAL	NA	1372	Too-Many
TCGA.NH.A6GB	19	260969	59095125	11549	-0.1036	NEUTRAL	NA	1372	Too-Many
TCGA.NH.A6GC	19	260969	59095125	11532	-0.0411	NEUTRAL	NA	1372	Too-Many
TCGA.NH.A8F8	19	260969	59095125	11550	-0.0231	NEUTRAL	NA	1372	Too-Many
TCGA.QG.A5YV	19	260969	59095125	11490	-0.086	NEUTRAL	NA	1372	Too-Many
TCGA.QG.A5YW	19	260969	59095125	11497	0.2276	NEUTRAL	NA	1372	Too-Many
TCGA.QG.A5YX	19	260969	59095125	11464	-0.1507	NEUTRAL	NA	1372	Too-Many
TCGA.QG.A5Z2	19	260969	59095125	11475	-0.0853	NEUTRAL	NA	1372	Too-Many
TCGA.RU.A8FL	19	260969	59095125	11545	-0.1585	NEUTRAL	NA	1372	Too-Many
TCGA.WS.AB45	19	260969	59095125	11545	0.0181	NEUTRAL	NA	1372	Too-Many
TCGA.AA.A01Q.01A	19	308545	336027	10	-0.3936	NEUTRAL	NA	1	MIER2
TCGA.AG.3909.01A	19	308545	372568	14	-0.3857	NEUTRAL	NA	2	"MIER2,THEG"
TCGA.AA.A017.01A	19	334393	1360183	71	0.018	NEUTRAL	NA	45	"ABCA7,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,EFNA2,ELANE,FGF22,FSTL3,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MIDN,MIER2,MISP,MUM1,ODF3L2,PALM,POLR2E,POLRMT,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SBNO2,SHC2,STK11,THEG,TMEM259,TPGS1,WDR18"
TCGA.AA.A024.01A	19	367054	2040987	190	0.3432	NEUTRAL	NA	68	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,KLF16,LPPR3,MADCAM1,MBD3,MED16,MEX3D,MIDN,MISP,MKNK2,MUM1,NDUFS7,ODF3L2,ONECUT3,PALM,PCSK4,PLK5,POLR2E,POLRMT,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SHC2,STK11,TCF3,THEG,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.AG.3909.01A	19	373404	734087	32	0.2911	NEUTRAL	NA	16	"BSG,C2CD4C,CDC34,FGF22,FSTL3,GZMM,HCN2,MADCAM1,ODF3L2,PALM,POLRMT,PRSS57,RNF126,SHC2,THEG,TPGS1"
TCGA.A6.5659	19	420754	35338388	6046	-0.0187	NEUTRAL	NA	626	Too-Many
TCGA.AG.3906.01A	19	504697	549583	5	0.2813	NEUTRAL	NA	4	"CDC34,GZMM,MADCAM1,TPGS1"
TCGA.CI.6624	19	509716	2048597	132	0.3305	NEUTRAL	NA	63	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,KLF16,LPPR3,MBD3,MED16,MEX3D,MIDN,MISP,MKNK2,MUM1,NDUFS7,ONECUT3,PALM,PCSK4,PLK5,POLR2E,POLRMT,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,STK11,TCF3,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.AA.A01Q.01A	19	615768	740303	32	-0.1067	NEUTRAL	NA	7	"FGF22,FSTL3,HCN2,PALM,POLRMT,PRSS57,RNF126"
TCGA.AG.A01W.01A	19	632295	1761556	258	0.1471	NEUTRAL	NA	49	"ABCA7,ADAMTSL5,APC2,ARID3A,ATP5D,AZU1,C19orf24,C19orf25,C19orf26,CFD,CIRBP,CNN2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,HMHA1,KISS1R,LPPR3,MBD3,MED16,MEX3D,MIDN,MISP,MUM1,NDUFS7,ONECUT3,PALM,PCSK4,PLK5,POLR2E,POLRMT,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,RNF126,RPS15,SBNO2,STK11,TCF3,TMEM259,UQCR11,WDR18"
TCGA.A6.3808.01A	19	632795	966555	95	-0.4502	NEUTRAL	NA	17	"ARID3A,AZU1,CFD,ELANE,FGF22,FSTL3,KISS1R,LPPR3,MED16,MISP,PALM,POLRMT,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126"
TCGA.AA.A02K.01A	19	652188	971838	70	-0.0143	NEUTRAL	NA	15	"ARID3A,AZU1,CFD,ELANE,FSTL3,KISS1R,LPPR3,MED16,MISP,PALM,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126"
TCGA.AA.A010.01A	19	726074	763445	12	-0.459	NEUTRAL	NA	2	"MISP,PALM"
TCGA.AG.3891.01A	19	763445	1298485	84	0.2091	NEUTRAL	NA	27	"ABCA7,ARID3A,ATP5D,AZU1,C19orf24,C19orf26,CFD,CIRBP,CNN2,EFNA2,ELANE,GPX4,GRIN3B,HMHA1,KISS1R,LPPR3,MED16,MIDN,MISP,POLR2E,PRTN3,PTBP1,R3HDM4,SBNO2,STK11,TMEM259,WDR18"
TCGA.AA.A01Q.01A	19	808330	814879	5	-0.0707	NEUTRAL	NA	2	"LPPR3,PTBP1"
TCGA.AG.3909.01A	19	810485	1298485	76	0.2704	NEUTRAL	NA	26	"ABCA7,ARID3A,ATP5D,AZU1,C19orf24,C19orf26,CFD,CIRBP,CNN2,EFNA2,ELANE,GPX4,GRIN3B,HMHA1,KISS1R,LPPR3,MED16,MIDN,POLR2E,PRTN3,PTBP1,R3HDM4,SBNO2,STK11,TMEM259,WDR18"
TCGA.AA.A01Q.01A	19	917455	1020729	28	-0.2347	NEUTRAL	NA	5	"ARID3A,GRIN3B,KISS1R,TMEM259,WDR18"
TCGA.AG.4009.01A	19	960031	985827	7	0.2815	NEUTRAL	NA	2	"ARID3A,WDR18"
TCGA.AG.A016.01A	19	968368	8982120	1079	-0.0764	NEUTRAL	NA	224	Too-Many
TCGA.AG.4009.01A	19	989735	1599401	105	-0.4428	NEUTRAL	NA	30	"ABCA7,ADAMTSL5,APC2,ATP5D,C19orf24,C19orf25,C19orf26,CIRBP,CNN2,DAZAP1,EFNA2,GAMT,GPX4,GRIN3B,HMHA1,MBD3,MEX3D,MIDN,MUM1,NDUFS7,PCSK4,PLK5,POLR2E,REEP6,RPS15,SBNO2,STK11,TMEM259,UQCR11,WDR18"
TCGA.AA.A02K.01A	19	1031024	1081513	38	0.1807	NEUTRAL	NA	3	"ABCA7,CNN2,HMHA1"
TCGA.AG.3906.01A	19	1031042	1057281	19	-0.1014	NEUTRAL	NA	2	"ABCA7,CNN2"
TCGA.AA.A01Q.01A	19	1062119	1234953	27	0.3103	NEUTRAL	NA	7	"ABCA7,C19orf26,GPX4,HMHA1,POLR2E,SBNO2,STK11"
TCGA.AA.A02K.01A	19	1082810	1790697	156	-0.1852	NEUTRAL	NA	28	"ADAMTSL5,APC2,ATP5D,ATP8B3,C19orf24,C19orf25,C19orf26,CIRBP,DAZAP1,EFNA2,GAMT,GPX4,HMHA1,MBD3,MEX3D,MIDN,MUM1,NDUFS7,ONECUT3,PCSK4,PLK5,POLR2E,REEP6,RPS15,SBNO2,STK11,TCF3,UQCR11"
TCGA.AA.3939.01A	19	1119863	15651230	2923	0.1438	NEUTRAL	NA	403	Too-Many
TCGA.AF.2693	19	1310135	59095125	11458	-0.0608	NEUTRAL	NA	1327	Too-Many
TCGA.AG.3909.01A	19	1356347	2151199	118	-0.2473	NEUTRAL	NA	28	"ABHD17A,ADAMTSL5,ADAT3,AP3D1,APC2,ATP8B3,BTBD2,C19orf25,CSNK1G2,DAZAP1,GAMT,IZUMO4,KLF16,MBD3,MEX3D,MKNK2,MOB3A,MUM1,NDUFS7,ONECUT3,PCSK4,PLK5,REEP6,REXO1,RPS15,SCAMP4,TCF3,UQCR11"
TCGA.AM.5820	19	1357495	1375354	6	-0.0514	NEUTRAL	NA	1	MUM1
TCGA.EF.5830	19	1360574	16743208	2676	0.0122	NEUTRAL	NA	419	Too-Many
TCGA.AG.3891.01A	19	1369222	1782976	45	0.3553	NEUTRAL	NA	17	"ADAMTSL5,APC2,ATP8B3,C19orf25,DAZAP1,GAMT,MBD3,MEX3D,MUM1,NDUFS7,ONECUT3,PCSK4,PLK5,REEP6,RPS15,TCF3,UQCR11"
TCGA.CK.5914.01A	19	1369222	6026135	1021	-0.1808	NEUTRAL	NA	132	Too-Many
TCGA.AA.A017.01A	19	1369521	54664850	6232	-0.1609	NEUTRAL	NA	1170	Too-Many
TCGA.AA.A01Q.01A	19	1383844	1397309	8	-0.1694	NEUTRAL	NA	2	"GAMT,NDUFS7"
TCGA.AA.A01Q.01A	19	1428793	1510596	38	-0.031	NEUTRAL	NA	7	"ADAMTSL5,APC2,C19orf25,DAZAP1,PCSK4,REEP6,RPS15"
TCGA.T9.A92H	19	1525884	59095125	11431	0.0016	NEUTRAL	NA	1317	Too-Many
TCGA.AA.A01Q.01A	19	1567456	2109057	70	-0.4112	NEUTRAL	NA	17	"ABHD17A,ADAT3,AP3D1,ATP8B3,BTBD2,CSNK1G2,IZUMO4,KLF16,MBD3,MEX3D,MKNK2,MOB3A,ONECUT3,REXO1,SCAMP4,TCF3,UQCR11"
TCGA.A6.3808.01A	19	1578288	1650111	23	0.0731	NEUTRAL	NA	3	"MBD3,TCF3,UQCR11"
TCGA.AG.3906.01A	19	1612164	1819892	17	-0.236	NEUTRAL	NA	4	"ATP8B3,ONECUT3,REXO1,TCF3"
TCGA.AG.4009.01A	19	1632280	1997296	30	-0.5134	NEUTRAL	NA	10	"ABHD17A,ADAT3,ATP8B3,BTBD2,CSNK1G2,KLF16,ONECUT3,REXO1,SCAMP4,TCF3"
TCGA.AA.3979	19	1642506	59095125	11376	0.0455	NEUTRAL	NA	1313	Too-Many
TCGA.AM.5820	19	1681479	1783145	10	-0.0571	NEUTRAL	NA	2	"ATP8B3,ONECUT3"
TCGA.AG.A01W.01A	19	1762457	2285561	128	0.3754	NEUTRAL	NA	20	"ABHD17A,ADAT3,AMH,AP3D1,ATP8B3,BTBD2,C19orf35,CSNK1G2,DOT1L,IZUMO4,JSRP1,KLF16,MKNK2,MOB3A,OAZ1,ONECUT3,PLEKHJ1,REXO1,SCAMP4,SF3A2"
TCGA.CM.6169	19	1770749	59095125	11353	0.038	NEUTRAL	NA	1312	Too-Many
TCGA.AG.3891.01A	19	1784767	1817201	10	-0.2848	NEUTRAL	NA	2	"ATP8B3,REXO1"
TCGA.AA.A010.01A	19	1784767	1848149	35	-0.4499	NEUTRAL	NA	2	"ATP8B3,REXO1"
TCGA.AA.A02K.01A	19	1810556	17426688	3161	-0.0362	NEUTRAL	NA	420	Too-Many
TCGA.AG.3891.01A	19	1818429	2328335	92	0.2627	NEUTRAL	NA	20	"ABHD17A,ADAT3,AMH,AP3D1,BTBD2,C19orf35,CSNK1G2,DOT1L,IZUMO4,JSRP1,KLF16,LINGO3,LSM7,MKNK2,MOB3A,OAZ1,PLEKHJ1,REXO1,SCAMP4,SF3A2"
TCGA.AG.3906.01A	19	1820226	4960617	414	0.2141	NEUTRAL	NA	94	"ABHD17A,ADAT3,AES,AMH,ANKRD24,AP3D1,APBA3,ARRDC5,ATCAY,BTBD2,C19orf35,C19orf71,CACTIN,CCDC94,CELF5,CHAF1A,CREB3L3,CSNK1G2,DAPK3,DIRAS1,DOHH,DOT1L,DPP9,DPP9-AS1,EBI3,EEF2,FEM1A,FSD1,FZR1,GADD45B,GIPC3,GNA11,GNA15,GNG7,HDGFRP2,HMG20B,IZUMO4,JSRP1,KLF16,LINGO3,LMNB2,LRG1,LSM7,MAP2K2,MATK,MFSD12,MKNK2,MOB3A,MPND,MRPL54,MYDGF,NCLN,NFIC,NMRK2,OAZ1,PIAS4,PIP5K1C,PLEKHJ1,PLIN3,PLIN4,PLIN5,RAX2,REXO1,S1PR4,SCAMP4,SEMA6B,SF3A2,SGTA,SH3GL1,SHD,SIRT6,SLC39A3,SMIM24,SPPL2B,STAP2,TBXA2R,THOP1,TICAM1,TIMM13,TJP3,TLE2,TLE6,TMIGD2,TMPRSS9,TNFAIP8L1,UBXN6,UHRF1,ZBTB7A,ZFR2,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.F4.6461	19	1867911	20826975	3266	-0.0573	NEUTRAL	NA	503	Too-Many
TCGA.AA.3556	19	1966231	20240048	3180	0.0295	NEUTRAL	NA	497	Too-Many
TCGA.AG.4009.01A	19	2037682	2127079	31	-0.1298	NEUTRAL	NA	4	"AP3D1,IZUMO4,MKNK2,MOB3A"
TCGA.AA.A024.01A	19	2046135	45571607	5317	0.1113	NEUTRAL	NA	851	Too-Many
TCGA.CI.6624	19	2053993	23926707	3891	-0.215	NEUTRAL	NA	518	Too-Many
TCGA.AA.A01Q.01A	19	2110666	2289965	28	-0.0259	NEUTRAL	NA	9	"AMH,AP3D1,C19orf35,DOT1L,JSRP1,LINGO3,OAZ1,PLEKHJ1,SF3A2"
TCGA.AG.A015.01A	19	2130360	2337400	26	0.3033	NEUTRAL	NA	11	"AMH,AP3D1,C19orf35,DOT1L,JSRP1,LINGO3,LSM7,OAZ1,PLEKHJ1,SF3A2,SPPL2B"
TCGA.A6.6142	19	2138653	24503984	4022	-0.3763	NEUTRAL	NA	518	Too-Many
TCGA.AG.3909.01A	19	2210648	2827576	72	-0.0162	NEUTRAL	NA	20	"AMH,C19orf35,DIRAS1,DOT1L,GADD45B,GNG7,JSRP1,LINGO3,LMNB2,LSM7,OAZ1,PLEKHJ1,SF3A2,SGTA,SLC39A3,SPPL2B,THOP1,TIMM13,TMPRSS9,ZNF554"
TCGA.AG.4009.01A	19	2223232	2852371	65	-0.3464	NEUTRAL	NA	21	"AMH,C19orf35,DIRAS1,DOT1L,GADD45B,GNG7,JSRP1,LINGO3,LMNB2,LSM7,OAZ1,PLEKHJ1,SF3A2,SGTA,SLC39A3,SPPL2B,THOP1,TIMM13,TMPRSS9,ZNF554,ZNF555"
TCGA.AG.A01W.01A	19	2364652	2773973	43	0.32	NEUTRAL	NA	8	"DIRAS1,GADD45B,GNG7,LMNB2,SGTA,SLC39A3,TIMM13,TMPRSS9"
TCGA.AG.3891.01A	19	2389732	3525819	116	0.3099	NEUTRAL	NA	26	"AES,CELF5,DIRAS1,DOHH,FZR1,GADD45B,GNA11,GNA15,GNG7,LMNB2,NCLN,NFIC,S1PR4,SGTA,SLC39A3,SMIM24,THOP1,TIMM13,TLE2,TLE6,TMPRSS9,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AG.A015.01A	19	2389732	8170954	803	-0.1461	NEUTRAL	NA	151	Too-Many
TCGA.AA.3967.01A	19	2389732	8923182	1141	-0.0319	NEUTRAL	NA	167	Too-Many
TCGA.AA.A01Q.01A	19	2427251	2757314	20	-0.0675	NEUTRAL	NA	7	"DIRAS1,GADD45B,GNG7,LMNB2,SGTA,SLC39A3,TIMM13"
TCGA.AM.5820	19	2503627	2619142	26	-0.0197	NEUTRAL	NA	1	GNG7
TCGA.AM.5820	19	2621192	2756182	18	0.255	NEUTRAL	NA	4	"DIRAS1,GNG7,SGTA,SLC39A3"
TCGA.AA.A01Q.01A	19	2799650	4338602	270	-0.2547	NEUTRAL	NA	47	"AES,ANKRD24,APBA3,ATCAY,C19orf71,CACTIN,CCDC94,CELF5,CREB3L3,DAPK3,DOHH,EBI3,EEF2,FSD1,FZR1,GIPC3,GNA11,GNA15,HMG20B,MAP2K2,MATK,MFSD12,MRPL54,NCLN,NFIC,NMRK2,PIAS4,PIP5K1C,RAX2,S1PR4,SHD,SIRT6,SMIM24,STAP2,TBXA2R,THOP1,TJP3,TLE2,TLE6,TMIGD2,ZBTB7A,ZFR2,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AG.A01W.01A	19	2828224	3477922	92	0.0368	NEUTRAL	NA	15	"AES,CELF5,GNA11,GNA15,NCLN,NFIC,S1PR4,SMIM24,TLE2,TLE6,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AM.5820	19	2830343	3004791	44	-0.1664	NEUTRAL	NA	7	"TLE2,TLE6,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AA.A010.01A	19	2867324	3006451	28	0.2238	NEUTRAL	NA	5	"TLE2,TLE6,ZNF556,ZNF57,ZNF77"
TCGA.AA.A00N.01A	19	2978180	5593891	541	-0.4662	NEUTRAL	NA	63	"AES,ANKRD24,APBA3,ARRDC5,ATCAY,C19orf71,CACTIN,CCDC94,CELF5,CHAF1A,CREB3L3,DAPK3,DOHH,DPP9,DPP9-AS1,EBI3,EEF2,FEM1A,FSD1,FZR1,GIPC3,GNA11,GNA15,HDGFRP2,HMG20B,KDM4B,LRG1,MAP2K2,MATK,MFSD12,MPND,MRPL54,MYDGF,NCLN,NFIC,NMRK2,PIAS4,PIP5K1C,PLIN3,PLIN4,PLIN5,PTPRS,RAX2,S1PR4,SAFB2,SEMA6B,SH3GL1,SHD,SIRT6,SMIM24,STAP2,TBXA2R,TICAM1,TJP3,TLE2,TLE6,TMIGD2,TNFAIP8L1,UBXN6,UHRF1,ZBTB7A,ZFR2,ZNRF4"
TCGA.AG.3909.01A	19	2986791	5590278	394	-0.157	NEUTRAL	NA	63	"AES,ANKRD24,APBA3,ARRDC5,ATCAY,C19orf71,CACTIN,CCDC94,CELF5,CHAF1A,CREB3L3,DAPK3,DOHH,DPP9,DPP9-AS1,EBI3,EEF2,FEM1A,FSD1,FZR1,GIPC3,GNA11,GNA15,HDGFRP2,HMG20B,KDM4B,LRG1,MAP2K2,MATK,MFSD12,MPND,MRPL54,MYDGF,NCLN,NFIC,NMRK2,PIAS4,PIP5K1C,PLIN3,PLIN4,PLIN5,PTPRS,RAX2,S1PR4,SAFB2,SEMA6B,SH3GL1,SHD,SIRT6,SMIM24,STAP2,TBXA2R,TICAM1,TJP3,TLE2,TLE6,TMIGD2,TNFAIP8L1,UBXN6,UHRF1,ZBTB7A,ZFR2,ZNRF4"
TCGA.AA.A00L.01A	19	2994861	4408910	221	0.2791	NEUTRAL	NA	44	"AES,ANKRD24,APBA3,ATCAY,C19orf71,CACTIN,CCDC94,CELF5,CHAF1A,CREB3L3,DAPK3,DOHH,EBI3,EEF2,FSD1,FZR1,GIPC3,GNA11,GNA15,HMG20B,MAP2K2,MATK,MFSD12,MPND,MRPL54,NCLN,NFIC,NMRK2,PIAS4,PIP5K1C,RAX2,S1PR4,SH3GL1,SHD,SIRT6,SMIM24,STAP2,TBXA2R,TJP3,TLE2,TLE6,TMIGD2,ZBTB7A,ZFR2"
TCGA.AG.4009.01A	19	3014494	3623695	63	-0.2611	NEUTRAL	NA	17	"AES,C19orf71,CACTIN,CELF5,DOHH,FZR1,GIPC3,GNA11,GNA15,HMG20B,MFSD12,NCLN,NFIC,S1PR4,SMIM24,TBXA2R,TLE2"
TCGA.AA.3861.01A	19	3014494	4186339	216	-0.2837	NEUTRAL	NA	34	"AES,ANKRD24,APBA3,ATCAY,C19orf71,CACTIN,CELF5,CREB3L3,DAPK3,DOHH,EEF2,FZR1,GIPC3,GNA11,GNA15,HMG20B,MAP2K2,MATK,MFSD12,MRPL54,NCLN,NFIC,NMRK2,PIAS4,PIP5K1C,RAX2,S1PR4,SIRT6,SMIM24,TBXA2R,TJP3,TLE2,ZBTB7A,ZFR2"
TCGA.AM.5820	19	3143282	5009544	209	0.357	NEUTRAL	NA	56	"ANKRD24,APBA3,ARRDC5,ATCAY,C19orf71,CACTIN,CCDC94,CELF5,CHAF1A,CREB3L3,DAPK3,DOHH,DPP9,DPP9-AS1,EBI3,EEF2,FEM1A,FSD1,FZR1,GIPC3,GNA15,HDGFRP2,HMG20B,KDM4B,LRG1,MAP2K2,MATK,MFSD12,MPND,MRPL54,MYDGF,NCLN,NFIC,NMRK2,PIAS4,PIP5K1C,PLIN3,PLIN4,PLIN5,RAX2,S1PR4,SEMA6B,SH3GL1,SHD,SIRT6,SMIM24,STAP2,TBXA2R,TICAM1,TJP3,TMIGD2,TNFAIP8L1,UBXN6,UHRF1,ZBTB7A,ZFR2"
TCGA.AA.A010.01A	19	3284830	3456494	15	-0.0794	NEUTRAL	NA	2	"CELF5,NFIC"
TCGA.AA.3660	19	3429936	59095125	11174	-0.0264	NEUTRAL	NA	1267	Too-Many
TCGA.AA.3966	19	3429936	59095125	11152	-0.1655	NEUTRAL	NA	1267	Too-Many
TCGA.AG.A01W.01A	19	3489693	4051970	147	0.069	NEUTRAL	NA	21	"APBA3,ATCAY,C19orf71,CACTIN,DAPK3,DOHH,EEF2,FZR1,GIPC3,HMG20B,MATK,MFSD12,MRPL54,NMRK2,PIAS4,PIP5K1C,RAX2,TBXA2R,TJP3,ZBTB7A,ZFR2"
TCGA.AG.3891.01A	19	3526931	3546028	7	-0.4651	NEUTRAL	NA	3	"C19orf71,FZR1,MFSD12"
TCGA.AG.3891.01A	19	3547230	3984087	97	0.3488	NEUTRAL	NA	16	"APBA3,ATCAY,CACTIN,DAPK3,EEF2,GIPC3,HMG20B,MATK,MFSD12,MRPL54,NMRK2,PIP5K1C,RAX2,TBXA2R,TJP3,ZFR2"
TCGA.4N.A93T	19	3611971	22600545	3388	-0.0714	NEUTRAL	NA	467	Too-Many
TCGA.AA.A010.01A	19	3613018	3771477	52	-0.4769	NEUTRAL	NA	6	"APBA3,CACTIN,MRPL54,PIP5K1C,RAX2,TJP3"
TCGA.A6.3808.01A	19	3767209	6467493	569	-0.1908	NEUTRAL	NA	71	"ACER1,ACSBG2,ALKBH7,ANKRD24,ARRDC5,ATCAY,C19orf70,CAPS,CATSPERD,CCDC94,CHAF1A,CLPP,CRB3,CREB3L3,DAPK3,DENND1C,DPP9,DPP9-AS1,DUS3L,EBI3,EEF2,FEM1A,FSD1,FUT3,FUT5,FUT6,GTF2F1,HDGFRP2,HSD11B1L,KDM4B,KHSRP,LONP1,LRG1,MAP2K2,MATK,MLLT1,MPND,MRPL54,MYDGF,NDUFA11,NMRK2,NRTN,PIAS4,PLIN3,PLIN4,PLIN5,PRR22,PSPN,PTPRS,RANBP3,RAX2,RFX2,RPL36,SAFB,SAFB2,SEMA6B,SH3GL1,SHD,SIRT6,SLC25A23,SLC25A41,STAP2,TICAM1,TMIGD2,TNFAIP8L1,UBXN6,UHRF1,VMAC,ZBTB7A,ZFR2,ZNRF4"
TCGA.A6.2674	19	3851343	59095125	11127	0.0033	NEUTRAL	NA	1251	Too-Many
TCGA.AG.4009.01A	19	3959059	4153672	32	-0.2756	NEUTRAL	NA	6	"CREB3L3,DAPK3,EEF2,MAP2K2,PIAS4,ZBTB7A"
TCGA.AG.3891.01A	19	4047708	5708307	276	0.3172	NEUTRAL	NA	38	"ANKRD24,ARRDC5,C19orf70,CCDC94,CHAF1A,CREB3L3,DPP9,DPP9-AS1,EBI3,FEM1A,FSD1,HDGFRP2,HSD11B1L,KDM4B,LONP1,LRG1,MAP2K2,MPND,MYDGF,PLIN3,PLIN4,PLIN5,PTPRS,RPL36,SAFB,SAFB2,SEMA6B,SH3GL1,SHD,SIRT6,STAP2,TICAM1,TMIGD2,TNFAIP8L1,UBXN6,UHRF1,ZBTB7A,ZNRF4"
TCGA.AG.A01W.01A	19	4053312	4269297	65	-0.3594	NEUTRAL	NA	7	"ANKRD24,CCDC94,CREB3L3,EBI3,MAP2K2,SIRT6,ZBTB7A"
TCGA.AA.A010.01A	19	4153672	4182403	17	0.0846	NEUTRAL	NA	2	"CREB3L3,SIRT6"
TCGA.AA.A01F.01A	19	4175630	4292589	25	-0.1964	NEUTRAL	NA	6	"ANKRD24,CCDC94,EBI3,SHD,SIRT6,TMIGD2"
TCGA.AA.A010.01A	19	4217495	4311792	31	-0.0685	NEUTRAL	NA	6	"ANKRD24,CCDC94,EBI3,FSD1,SHD,TMIGD2"
TCGA.AA.3861.01A	19	4224119	8136891	703	0.0093	NEUTRAL	NA	103	Too-Many
TCGA.AA.3862.01A	19	4224119	8136891	716	-0.1123	NEUTRAL	NA	103	Too-Many
TCGA.AG.4009.01A	19	4290402	4714074	91	-0.1504	NEUTRAL	NA	17	"CHAF1A,DPP9,DPP9-AS1,FSD1,HDGFRP2,LRG1,MPND,MYDGF,PLIN4,PLIN5,SEMA6B,SH3GL1,SHD,STAP2,TMIGD2,TNFAIP8L1,UBXN6"
TCGA.AA.A01F.01A	19	4294515	10287929	842	0.1612	NEUTRAL	NA	150	Too-Many
TCGA.AG.A01W.01A	19	4308199	4674129	101	0.0892	NEUTRAL	NA	13	"CHAF1A,FSD1,HDGFRP2,LRG1,MPND,MYDGF,PLIN4,PLIN5,SEMA6B,SH3GL1,STAP2,TNFAIP8L1,UBXN6"
TCGA.CM.6679	19	4332104	6996639	513	0.24645	NEUTRAL	NA	62	"ACER1,ACSBG2,ADGRE1,ALKBH7,ARRDC5,C19orf70,C3,CAPS,CATSPERD,CD70,CHAF1A,CLPP,CRB3,DENND1C,DPP9,DPP9-AS1,DUS3L,FEM1A,FUT3,FUT5,FUT6,GPR108,GTF2F1,HDGFRP2,HSD11B1L,KDM4B,KHSRP,LONP1,LRG1,MLLT1,MPND,MYDGF,NDUFA11,NRTN,PLIN3,PLIN4,PLIN5,PRR22,PSPN,PTPRS,RANBP3,RFX2,RPL36,SAFB,SAFB2,SEMA6B,SH2D3A,SH3GL1,SLC25A23,SLC25A41,STAP2,TICAM1,TNFAIP8L1,TNFSF14,TNFSF9,TRIP10,TUBB4A,UBXN6,UHRF1,VAV1,VMAC,ZNRF4"
TCGA.AA.A01Q.01A	19	4422516	6453945	256	-0.2289	NEUTRAL	NA	47	"ACER1,ACSBG2,ALKBH7,ARRDC5,C19orf70,CAPS,CATSPERD,CHAF1A,CLPP,DPP9,DPP9-AS1,DUS3L,FEM1A,FUT3,FUT5,FUT6,GTF2F1,HDGFRP2,HSD11B1L,KDM4B,KHSRP,LONP1,LRG1,MLLT1,MYDGF,NDUFA11,NRTN,PLIN3,PLIN4,PLIN5,PRR22,PSPN,PTPRS,RANBP3,RFX2,RPL36,SAFB,SAFB2,SEMA6B,SLC25A23,SLC25A41,TICAM1,TNFAIP8L1,UBXN6,UHRF1,VMAC,ZNRF4"
TCGA.AA.A010.01A	19	4429393	4508753	29	-0.3772	NEUTRAL	NA	4	"CHAF1A,HDGFRP2,PLIN4,UBXN6"
TCGA.AA.A00L.01A	19	4431909	5598750	91	0.3068	NEUTRAL	NA	20	"ARRDC5,CHAF1A,DPP9,DPP9-AS1,FEM1A,HDGFRP2,KDM4B,LRG1,MYDGF,PLIN3,PLIN4,PLIN5,PTPRS,SAFB2,SEMA6B,TICAM1,TNFAIP8L1,UBXN6,UHRF1,ZNRF4"
TCGA.AF.3914.01A	19	4529761	5687259	151	-0.1385	NEUTRAL	NA	19	"ARRDC5,C19orf70,DPP9,DPP9-AS1,FEM1A,HSD11B1L,KDM4B,LRG1,MYDGF,PLIN3,PLIN5,PTPRS,SAFB,SAFB2,SEMA6B,TICAM1,TNFAIP8L1,UHRF1,ZNRF4"
TCGA.AA.A010.01A	19	4670126	4705818	18	-0.0538	NEUTRAL	NA	3	"DPP9,DPP9-AS1,MYDGF"
TCGA.DC.6158	19	4767779	9454172	957	0.0049	NEUTRAL	NA	112	Too-Many
TCGA.AG.4009.01A	19	4891017	5219273	39	0.2025	NEUTRAL	NA	4	"ARRDC5,KDM4B,PTPRS,UHRF1"
TCGA.AG.A01W.01A	19	4907672	5162573	25	0.2424	NEUTRAL	NA	2	"KDM4B,UHRF1"
TCGA.AA.3712	19	4912728	7797611	609	0.1854	NEUTRAL	NA	66	"ACER1,ACSBG2,ADGRE1,ALKBH7,ARHGEF18,C19orf45,C19orf70,C3,CAMSAP3,CAPS,CATSPERD,CD70,CLEC4G,CLPP,CRB3,DENND1C,DUS3L,FCER2,FUT3,FUT5,FUT6,GPR108,GTF2F1,HSD11B1L,INSR,KDM4B,KHSRP,LONP1,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCEMP1,MCOLN1,MLLT1,NDUFA11,NRTN,PCP2,PET100,PEX11G,PNPLA6,PRR22,PSPN,PTPRS,RANBP3,RETN,RFX2,RPL36,SAFB,SAFB2,SH2D3A,SLC25A23,SLC25A41,STXBP2,TNFSF14,TNFSF9,TRAPPC5,TRIP10,TUBB4A,UHRF1,VAV1,VMAC,XAB2,ZNF358,ZNF557,ZNRF4"
TCGA.D5.6529	19	4928903	59095125	11026	0.0751	NEUTRAL	NA	1217	Too-Many
TCGA.AG.3906.01A	19	5032865	5215263	20	-0.3272	NEUTRAL	NA	2	"KDM4B,PTPRS"
TCGA.AA.A010.01A	19	5032865	5785160	140	-0.1727	NEUTRAL	NA	12	"C19orf70,CATSPERD,DUS3L,HSD11B1L,KDM4B,LONP1,PRR22,PTPRS,RPL36,SAFB,SAFB2,ZNRF4"
TCGA.G4.6322	19	5046069	42673596	7247	-0.0386	NEUTRAL	NA	685	Too-Many
TCGA.AG.3611.01A	19	5143946	5654070	56	-0.3899	NEUTRAL	NA	5	"KDM4B,PTPRS,SAFB,SAFB2,ZNRF4"
TCGA.AG.A01W.01A	19	5162927	5641468	71	-0.1983	NEUTRAL	NA	4	"PTPRS,SAFB,SAFB2,ZNRF4"
TCGA.AM.5820	19	5168019	6074346	169	0.2356	NEUTRAL	NA	20	"C19orf70,CAPS,CATSPERD,DUS3L,FUT3,FUT5,FUT6,HSD11B1L,LONP1,NDUFA11,NRTN,PRR22,PTPRS,RANBP3,RFX2,RPL36,SAFB,SAFB2,VMAC,ZNRF4"
TCGA.AG.3906.01A	19	5218383	5604542	29	0.1739	NEUTRAL	NA	3	"PTPRS,SAFB2,ZNRF4"
TCGA.AG.3893	19	5566231	55100458	9667	-0.0006	NEUTRAL	NA	1073	Too-Many
TCGA.AG.A02X.01A	19	5587232	59082320	7025	-0.0172	NEUTRAL	NA	1213	Too-Many
TCGA.AG.4009.01A	19	5591712	5668124	32	0.2036	NEUTRAL	NA	2	"SAFB,SAFB2"
TCGA.AG.3906.01A	19	5609959	5668124	25	-0.1937	NEUTRAL	NA	2	"SAFB,SAFB2"
TCGA.AA.A01I.01A	19	5626362	59082320	6762	-0.2718	NEUTRAL	NA	1212	Too-Many
TCGA.AA.3666	19	5638053	55524374	9895	-0.1137	NEUTRAL	NA	1086	Too-Many
TCGA.AG.A01W.01A	19	5642281	5671683	18	0.2375	NEUTRAL	NA	1	SAFB
TCGA.AG.3611.01A	19	5654323	6392790	104	-0.0915	NEUTRAL	NA	24	"ACER1,ACSBG2,ALKBH7,C19orf70,CAPS,CATSPERD,CLPP,DUS3L,FUT3,FUT5,FUT6,GTF2F1,HSD11B1L,LONP1,MLLT1,NDUFA11,NRTN,PRR22,PSPN,RANBP3,RFX2,RPL36,SAFB,VMAC"
TCGA.AG.3909.01A	19	5661481	5714152	26	-0.1511	NEUTRAL	NA	5	"C19orf70,HSD11B1L,LONP1,RPL36,SAFB"
TCGA.AA.A00N.01A	19	5667005	5713098	27	-0.3914	NEUTRAL	NA	5	"C19orf70,HSD11B1L,LONP1,RPL36,SAFB"
TCGA.AA.A00L.01A	19	5679284	5831489	31	0.0031	NEUTRAL	NA	9	"C19orf70,CATSPERD,DUS3L,FUT6,HSD11B1L,LONP1,NRTN,PRR22,RPL36"
TCGA.AF.3914.01A	19	5713098	6333415	100	-0.0978	NEUTRAL	NA	16	"ACER1,ACSBG2,CAPS,CATSPERD,DUS3L,FUT3,FUT5,FUT6,LONP1,MLLT1,NDUFA11,NRTN,PRR22,RANBP3,RFX2,VMAC"
TCGA.A6.3810.01A	19	5724749	5775175	20	-0.4202	NEUTRAL	NA	1	CATSPERD
TCGA.AG.A01W.01A	19	5735350	6859681	229	-0.0671	NEUTRAL	NA	33	"ACER1,ACSBG2,ALKBH7,C3,CAPS,CATSPERD,CD70,CLPP,CRB3,DENND1C,DUS3L,FUT3,FUT5,FUT6,GPR108,GTF2F1,KHSRP,MLLT1,NDUFA11,NRTN,PRR22,PSPN,RANBP3,RFX2,SH2D3A,SLC25A23,SLC25A41,TNFSF14,TNFSF9,TRIP10,TUBB4A,VAV1,VMAC"
TCGA.AA.A00N.01A	19	5744390	6270573	94	-0.2932	NEUTRAL	NA	14	"ACSBG2,CAPS,CATSPERD,DUS3L,FUT3,FUT5,FUT6,MLLT1,NDUFA11,NRTN,PRR22,RANBP3,RFX2,VMAC"
TCGA.AG.3891.01A	19	5757800	6458162	118	0.2835	NEUTRAL	NA	22	"ACER1,ACSBG2,ALKBH7,CAPS,CATSPERD,CLPP,DUS3L,FUT3,FUT5,FUT6,GTF2F1,KHSRP,MLLT1,NDUFA11,NRTN,PRR22,PSPN,RANBP3,RFX2,SLC25A23,SLC25A41,VMAC"
TCGA.AA.3509.01A	19	5757800	10270307	918	-0.11	NEUTRAL	NA	120	Too-Many
TCGA.AZ.4684.01A	19	5757800	12474308	1404	-0.2306	NEUTRAL	NA	187	Too-Many
TCGA.DC.4749	19	5769443	7558023	395	0.2182	NEUTRAL	NA	42	"ACER1,ACSBG2,ADGRE1,ALKBH7,ARHGEF18,C3,CAPS,CATSPERD,CD70,CLPP,CRB3,DENND1C,DUS3L,FUT3,FUT5,FUT6,GPR108,GTF2F1,INSR,KHSRP,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MLLT1,NDUFA11,NRTN,PEX11G,PRR22,PSPN,RANBP3,RFX2,SH2D3A,SLC25A23,SLC25A41,TNFSF14,TNFSF9,TRIP10,TUBB4A,VAV1,VMAC,ZNF557"
TCGA.AG.4009.01A	19	5776132	5843775	12	-0.0869	NEUTRAL	NA	6	"CATSPERD,DUS3L,FUT3,FUT6,NRTN,PRR22"
TCGA.A6.3810.01A	19	5776132	14866427	1886	-0.0219	NEUTRAL	NA	255	Too-Many
TCGA.AG.3906.01A	19	5778358	6361544	71	0.0281	NEUTRAL	NA	16	"ACER1,ACSBG2,CAPS,CATSPERD,CLPP,DUS3L,FUT3,FUT5,FUT6,MLLT1,NDUFA11,NRTN,PRR22,RANBP3,RFX2,VMAC"
TCGA.AG.3909.01A	19	5787032	6262194	62	-0.1733	NEUTRAL	NA	12	"ACSBG2,CAPS,DUS3L,FUT3,FUT5,FUT6,MLLT1,NDUFA11,NRTN,RANBP3,RFX2,VMAC"
TCGA.DT.5265	19	6006181	59095125	10808	-0.01	NEUTRAL	NA	1196	Too-Many
TCGA.AM.5820	19	6075712	6207736	45	-0.1708	NEUTRAL	NA	2	"ACSBG2,RFX2"
TCGA.AA.A010.01A	19	6177199	6389407	36	-0.4477	NEUTRAL	NA	7	"ACER1,ACSBG2,ALKBH7,CLPP,GTF2F1,MLLT1,PSPN"
TCGA.CK.5914.01A	19	6190532	6270573	11	-0.0552	NEUTRAL	NA	2	"ACSBG2,MLLT1"
TCGA.CL.5918	19	6226005	59095125	10739	-0.0242	NEUTRAL	NA	1194	Too-Many
TCGA.D5.6922	19	6289163	59095125	10716	-0.0252	NEUTRAL	NA	1193	Too-Many
TCGA.AM.5820	19	6295862	6338369	6	-0.3139	NEUTRAL	NA	1	ACER1
TCGA.CK.5914.01A	19	6333415	6427066	30	-0.3649	NEUTRAL	NA	7	"ACER1,ALKBH7,CLPP,GTF2F1,KHSRP,PSPN,SLC25A41"
TCGA.AA.A00L.01A	19	6333415	6679376	45	0.2494	NEUTRAL	NA	15	"ACER1,ALKBH7,C3,CD70,CLPP,CRB3,DENND1C,GTF2F1,KHSRP,PSPN,SLC25A23,SLC25A41,TNFSF14,TNFSF9,TUBB4A"
TCGA.AG.3906.01A	19	6362419	6392790	12	0.3753	NEUTRAL	NA	4	"ALKBH7,CLPP,GTF2F1,PSPN"
TCGA.AG.4009.01A	19	6362419	6468845	41	-0.511	NEUTRAL	NA	9	"ALKBH7,CLPP,CRB3,DENND1C,GTF2F1,KHSRP,PSPN,SLC25A23,SLC25A41"
TCGA.AM.5820	19	6362723	6535497	21	0.364	NEUTRAL	NA	11	"ALKBH7,CLPP,CRB3,DENND1C,GTF2F1,KHSRP,PSPN,SLC25A23,SLC25A41,TNFSF9,TUBB4A"
TCGA.AG.3909.01A	19	6389407	6426353	12	0.2372	NEUTRAL	NA	3	"GTF2F1,KHSRP,SLC25A41"
TCGA.AG.3906.01A	19	6429978	6730259	67	0.0151	NEUTRAL	NA	10	"C3,CD70,CRB3,DENND1C,GPR108,SLC25A23,SLC25A41,TNFSF14,TNFSF9,TUBB4A"
TCGA.AA.A010.01A	19	6441979	6479618	23	-0.3606	NEUTRAL	NA	3	"CRB3,DENND1C,SLC25A23"
TCGA.AG.3611.01A	19	6441979	6896362	91	0.2607	NEUTRAL	NA	13	"ADGRE1,C3,CD70,CRB3,DENND1C,GPR108,SH2D3A,SLC25A23,TNFSF14,TNFSF9,TRIP10,TUBB4A,VAV1"
TCGA.CK.5914.01A	19	6453945	6737419	76	-0.0725	NEUTRAL	NA	9	"C3,CD70,CRB3,DENND1C,GPR108,SLC25A23,TNFSF14,TNFSF9,TUBB4A"
TCGA.AG.3909.01A	19	6454292	6458162	4	-0.0672	NEUTRAL	NA	1	SLC25A23
TCGA.AA.A00Q.01A	19	6458162	6710633	41	0.1865	NEUTRAL	NA	8	"C3,CD70,CRB3,DENND1C,SLC25A23,TNFSF14,TNFSF9,TUBB4A"
TCGA.AA.A00O.01A	19	6466440	8139908	264	-0.0368	NEUTRAL	NA	47	"ADGRE1,ARHGEF18,C19orf45,C3,CAMSAP3,CCL25,CD209,CD70,CLEC4G,CLEC4M,CRB3,CTXN1,DENND1C,ELAVL1,EVI5L,FBN3,FCER2,GPR108,INSR,LRRC8E,MAP2K7,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCEMP1,MCOLN1,PCP2,PET100,PEX11G,PNPLA6,PRR36,RETN,SH2D3A,SNAPC2,STXBP2,TGFBR3L,TIMM44,TNFSF14,TNFSF9,TRAPPC5,TRIP10,TUBB4A,VAV1,XAB2,ZNF358,ZNF557"
TCGA.AA.A01Q.01A	19	6467493	6677876	24	0.227	NEUTRAL	NA	6	"C3,CD70,DENND1C,TNFSF14,TNFSF9,TUBB4A"
TCGA.AG.4009.01A	19	6469583	6590042	15	0.3314	NEUTRAL	NA	4	"CD70,DENND1C,TNFSF9,TUBB4A"
TCGA.AF.3914.01A	19	6472848	6720464	49	0.056	NEUTRAL	NA	6	"C3,CD70,DENND1C,TNFSF14,TNFSF9,TUBB4A"
TCGA.DY.A1DF	19	6481458	7640455	272	0.3335	NEUTRAL	NA	23	"ADGRE1,ARHGEF18,C19orf45,C3,CD70,DENND1C,GPR108,INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCOLN1,PEX11G,PNPLA6,SH2D3A,TNFSF14,TNFSF9,TRIP10,TUBB4A,VAV1,ZNF358,ZNF557"
TCGA.AG.3891.01A	19	6481602	6702430	30	0.2552	NEUTRAL	NA	6	"C3,CD70,DENND1C,TNFSF14,TNFSF9,TUBB4A"
TCGA.AM.5820	19	6564401	7657099	269	-0.0179	NEUTRAL	NA	20	"ADGRE1,ARHGEF18,C19orf45,C3,CD70,GPR108,INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCOLN1,PEX11G,PNPLA6,SH2D3A,TNFSF14,TRIP10,VAV1,ZNF358,ZNF557"
TCGA.AA.A01Q.01A	19	6679079	6702430	16	-0.2614	NEUTRAL	NA	1	C3
TCGA.AA.A00L.01A	19	6693389	8509841	323	0.3748	NEUTRAL	NA	50	"ADGRE1,ANGPTL4,ARHGEF18,C19orf45,C3,CAMSAP3,CCL25,CD209,CD320,CERS4,CLEC4G,CLEC4M,CTXN1,ELAVL1,EVI5L,FBN3,FCER2,GPR108,HNRNPM,INSR,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCEMP1,MCOLN1,NDUFA7,PCP2,PET100,PEX11G,PNPLA6,PRR36,RAB11B,RETN,RPS28,SH2D3A,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,TRIP10,VAV1,XAB2,ZNF358,ZNF557"
TCGA.AG.3891.01A	19	6707046	6720464	12	-0.276	NEUTRAL	NA	1	C3
TCGA.AA.A01Q.01A	19	6707046	6733803	15	0.2768	NEUTRAL	NA	2	"C3,GPR108"
TCGA.A6.3808.01A	19	6709658	6753429	32	-0.3629	NEUTRAL	NA	4	"C3,GPR108,SH2D3A,TRIP10"
TCGA.AG.4009.01A	19	6710633	6719170	7	0.2191	NEUTRAL	NA	1	C3
TCGA.AA.A010.01A	19	6713153	6720464	5	-0.4567	NEUTRAL	NA	1	C3
TCGA.AG.4009.01A	19	6720464	6760607	23	-0.4538	NEUTRAL	NA	4	"C3,GPR108,SH2D3A,TRIP10"
TCGA.AG.3891.01A	19	6730259	8168418	262	0.2714	NEUTRAL	NA	40	"ADGRE1,ARHGEF18,C19orf45,CAMSAP3,CCL25,CD209,CLEC4G,CLEC4M,CTXN1,ELAVL1,EVI5L,FBN3,FCER2,GPR108,INSR,LRRC8E,MAP2K7,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCEMP1,MCOLN1,PCP2,PET100,PEX11G,PNPLA6,PRR36,RETN,SH2D3A,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,TRIP10,VAV1,XAB2,ZNF358,ZNF557"
TCGA.CK.5914.01A	19	6750275	6833173	20	0.07	NEUTRAL	NA	3	"SH2D3A,TRIP10,VAV1"
TCGA.AA.A010.01A	19	6752577	6763625	7	-0.3593	NEUTRAL	NA	1	SH2D3A
TCGA.AA.A00Q.01A	19	6754026	6828365	13	0.0032	NEUTRAL	NA	2	"SH2D3A,VAV1"
TCGA.AA.A01Q.01A	19	6754026	6833173	16	-0.2308	NEUTRAL	NA	2	"SH2D3A,VAV1"
TCGA.AG.3909.01A	19	6760607	6843065	16	-0.1876	NEUTRAL	NA	2	"SH2D3A,VAV1"
TCGA.AG.3906.01A	19	6760607	7534753	77	0.0212	NEUTRAL	NA	10	"ADGRE1,ARHGEF18,INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,SH2D3A,VAV1,ZNF557"
TCGA.AF.3914.01A	19	6772772	7571888	86	-0.1597	NEUTRAL	NA	11	"ADGRE1,ARHGEF18,C19orf45,INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,PEX11G,VAV1,ZNF557"
TCGA.AA.A00N.01A	19	6826585	6843065	10	0.0768	NEUTRAL	NA	1	VAV1
TCGA.AA.A02E.01A	19	6828365	13423442	1150	-0.2032	NEUTRAL	NA	192	Too-Many
TCGA.AA.A01Q.01A	19	6833517	7509062	56	0.3076	NEUTRAL	NA	9	"ADGRE1,ARHGEF18,INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,VAV1,ZNF557"
TCGA.AG.A01W.01A	19	6864668	7412488	50	-0.4725	NEUTRAL	NA	7	"ADGRE1,INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,ZNF557"
TCGA.A6.3808.01A	19	6937202	7267318	31	0.1119	NEUTRAL	NA	7	"ADGRE1,INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,ZNF557"
TCGA.EI.6513	19	6993032	7171628	43	-0.0891	NEUTRAL	NA	6	"INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,ZNF557"
TCGA.CM.6679	19	6997372	59095125	10553	-0.12055	NEUTRAL	NA	1173	Too-Many
TCGA.CK.5914.01A	19	7030556	7083321	11	-0.4292	NEUTRAL	NA	5	"MBD3L2,MBD3L3,MBD3L4,MBD3L5,ZNF557"
TCGA.AA.A010.01A	19	7162995	7511878	12	-0.0133	NEUTRAL	NA	2	"ARHGEF18,INSR"
TCGA.AG.A01W.01A	19	7415111	7506630	35	0.1832	NEUTRAL	NA	1	ARHGEF18
TCGA.EI.6513	19	7437274	7824471	102	-0.061	NEUTRAL	NA	17	"ARHGEF18,C19orf45,CAMSAP3,CD209,CLEC4G,FCER2,MCEMP1,MCOLN1,PCP2,PET100,PEX11G,PNPLA6,RETN,STXBP2,TRAPPC5,XAB2,ZNF358"
TCGA.AG.3909.01A	19	7504785	7754067	95	-0.4253	NEUTRAL	NA	15	"ARHGEF18,C19orf45,CAMSAP3,FCER2,MCEMP1,MCOLN1,PCP2,PET100,PEX11G,PNPLA6,RETN,STXBP2,TRAPPC5,XAB2,ZNF358"
TCGA.AA.A00N.01A	19	7504785	8127015	184	-0.4754	NEUTRAL	NA	28	"ARHGEF18,C19orf45,CAMSAP3,CCL25,CD209,CLEC4G,CLEC4M,CTXN1,ELAVL1,EVI5L,FCER2,LRRC8E,MAP2K7,MCEMP1,MCOLN1,PCP2,PET100,PEX11G,PNPLA6,PRR36,RETN,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,XAB2,ZNF358"
TCGA.AG.3611.01A	19	7504785	8186095	175	0.2039	NEUTRAL	NA	29	"ARHGEF18,C19orf45,CAMSAP3,CCL25,CD209,CLEC4G,CLEC4M,CTXN1,ELAVL1,EVI5L,FBN3,FCER2,LRRC8E,MAP2K7,MCEMP1,MCOLN1,PCP2,PET100,PEX11G,PNPLA6,PRR36,RETN,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,XAB2,ZNF358"
TCGA.AG.4009.01A	19	7506512	7595120	30	-0.3107	NEUTRAL	NA	5	"ARHGEF18,C19orf45,MCOLN1,PEX11G,ZNF358"
TCGA.CK.5914.01A	19	7506512	7810857	129	-0.0728	NEUTRAL	NA	17	"ARHGEF18,C19orf45,CAMSAP3,CD209,CLEC4G,FCER2,MCEMP1,MCOLN1,PCP2,PET100,PEX11G,PNPLA6,RETN,STXBP2,TRAPPC5,XAB2,ZNF358"
TCGA.AG.A01W.01A	19	7507039	7818572	100	-0.1958	NEUTRAL	NA	17	"ARHGEF18,C19orf45,CAMSAP3,CD209,CLEC4G,FCER2,MCEMP1,MCOLN1,PCP2,PET100,PEX11G,PNPLA6,RETN,STXBP2,TRAPPC5,XAB2,ZNF358"
TCGA.AA.A01Q.01A	19	7511878	7584127	23	-0.1675	NEUTRAL	NA	4	"ARHGEF18,C19orf45,PEX11G,ZNF358"
TCGA.A6.3808.01A	19	7542038	8609134	297	-0.109	NEUTRAL	NA	40	"ANGPTL4,C19orf45,CAMSAP3,CCL25,CD209,CD320,CERS4,CLEC4G,CLEC4M,CTXN1,ELAVL1,EVI5L,FBN3,FCER2,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,MCEMP1,MCOLN1,MYO1F,NDUFA7,PCP2,PET100,PEX11G,PNPLA6,PRAM1,PRR36,RAB11B,RETN,RPS28,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,XAB2,ZNF358,ZNF414"
TCGA.A6.2672	19	7567756	59095125	10435	-0.41	NEUTRAL	NA	1165	Too-Many
TCGA.AF.3914.01A	19	7595120	7920841	102	-0.2795	NEUTRAL	NA	15	"CAMSAP3,CD209,CLEC4G,CLEC4M,EVI5L,FCER2,MCEMP1,MCOLN1,PCP2,PET100,PNPLA6,RETN,STXBP2,TRAPPC5,XAB2"
TCGA.AG.4009.01A	19	7598357	7625851	20	0.3169	NEUTRAL	NA	2	"MCOLN1,PNPLA6"
TCGA.AG.3906.01A	19	7605485	7625851	18	0.0939	NEUTRAL	NA	1	PNPLA6
TCGA.AA.A010.01A	19	7605777	7623689	17	0.1623	NEUTRAL	NA	1	PNPLA6
TCGA.AA.A01Q.01A	19	7606204	7735075	50	-0.0741	NEUTRAL	NA	7	"CAMSAP3,PCP2,PET100,PNPLA6,RETN,STXBP2,XAB2"
TCGA.AG.4009.01A	19	7670075	7692112	17	-0.4778	NEUTRAL	NA	2	"CAMSAP3,XAB2"
TCGA.AA.3662	19	7686853	34962060	5317	-0.0417	NEUTRAL	NA	413	Too-Many
TCGA.AG.3906.01A	19	7688607	7960437	58	0.0979	NEUTRAL	NA	14	"CD209,CLEC4G,CLEC4M,EVI5L,FCER2,LRRC8E,MCEMP1,PCP2,PET100,PRR36,RETN,STXBP2,TRAPPC5,XAB2"
TCGA.AG.4009.01A	19	7692576	7734649	17	0.2552	NEUTRAL	NA	5	"PCP2,PET100,RETN,STXBP2,XAB2"
TCGA.AA.A010.01A	19	7694292	7712552	17	0.0161	NEUTRAL	NA	4	"PCP2,PET100,STXBP2,XAB2"
TCGA.AA.3930.01A	19	7704569	7747109	17	0.1783	NEUTRAL	NA	4	"MCEMP1,RETN,STXBP2,TRAPPC5"
TCGA.AG.A011.01A	19	7704569	23941470	2289	0.0772	NEUTRAL	NA	373	Too-Many
TCGA.AA.A004.01A	19	7705576	10792632	538	0.0896	NEUTRAL	NA	90	"ACTL9,ADAMTS10,ANGPTL4,ANGPTL6,AP1M2,ATG4D,C19orf66,CCL25,CD209,CD320,CDC37,CDKN2D,CERS4,CLEC4G,CLEC4M,COL5A3,CTXN1,DNMT1,EIF3G,ELAVL1,EVI5L,FBN3,FBXL12,FCER2,FDX1L,HNRNPM,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK3,KEAP1,KRI1,LRRC8E,MAP2K7,MARCH2,MBD3L1,MCEMP1,MRPL4,MUC16,MYO1F,NDUFA7,OLFM2,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,P2RY11,PDE4A,PIN1,PPAN,PPAN-P2RY11,PRAM1,PRR36,RAB11B,RAVER1,RDH8,RETN,RPS28,S1PR2,S1PR5,SLC44A2,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,TYK2,UBL5,ZGLP1,ZNF121,ZNF177,ZNF266,ZNF317,ZNF414,ZNF426,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.AD.6901	19	7712276	59095125	10395	0.0155	NEUTRAL	NA	1157	Too-Many
TCGA.AM.5820	19	7722635	9090761	273	0.1655	NEUTRAL	NA	36	"ACTL9,ADAMTS10,ANGPTL4,CCL25,CD209,CD320,CERS4,CLEC4G,CLEC4M,CTXN1,ELAVL1,EVI5L,FBN3,FCER2,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L1,MCEMP1,MUC16,MYO1F,NDUFA7,OR2Z1,PRAM1,PRR36,RAB11B,RETN,RPS28,SNAPC2,TGFBR3L,TIMM44,TRAPPC5,ZNF414,ZNF558"
TCGA.AA.A01Q.01A	19	7743743	7794220	10	-0.33	NEUTRAL	NA	4	"CLEC4G,FCER2,MCEMP1,TRAPPC5"
TCGA.AG.4009.01A	19	7747109	7912586	30	0.0899	NEUTRAL	NA	6	"CD209,CLEC4G,CLEC4M,EVI5L,FCER2,TRAPPC5"
TCGA.AG.3909.01A	19	7755008	7833687	26	0.2652	NEUTRAL	NA	4	"CD209,CLEC4G,CLEC4M,FCER2"
TCGA.AA.A01Q.01A	19	7794686	7927876	30	0.131	NEUTRAL	NA	4	"CD209,CLEC4G,CLEC4M,EVI5L"
TCGA.AA.A010.01A	19	7796530	7833687	16	0.0978	NEUTRAL	NA	3	"CD209,CLEC4G,CLEC4M"
TCGA.AA.3712	19	7800221	9090761	252	-0.098	NEUTRAL	NA	31	"ACTL9,ADAMTS10,ANGPTL4,CCL25,CD209,CD320,CERS4,CLEC4M,CTXN1,ELAVL1,EVI5L,FBN3,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L1,MUC16,MYO1F,NDUFA7,OR2Z1,PRAM1,PRR36,RAB11B,RPS28,SNAPC2,TGFBR3L,TIMM44,ZNF414,ZNF558"
TCGA.AG.3901	19	7805950	59095125	10367	-0.0302	NEUTRAL	NA	1151	Too-Many
TCGA.AA.3930.01A	19	7809775	7970625	25	-0.0192	NEUTRAL	NA	6	"CD209,CLEC4M,EVI5L,LRRC8E,MAP2K7,PRR36"
TCGA.AG.A01W.01A	19	7819766	7904698	24	0.2376	NEUTRAL	NA	2	"CLEC4M,EVI5L"
TCGA.EI.6513	19	7831627	7865487	19	-0.0945	NEUTRAL	NA	1	CLEC4M
TCGA.AG.A01W.01A	19	7905894	8551739	148	-0.2399	NEUTRAL	NA	20	"ANGPTL4,CCL25,CD320,CERS4,CTXN1,ELAVL1,EVI5L,FBN3,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,NDUFA7,PRR36,RAB11B,RPS28,SNAPC2,TGFBR3L,TIMM44"
TCGA.CK.5914.01A	19	7911381	7914854	4	0.005	NEUTRAL	NA	1	EVI5L
TCGA.CK.5914.01A	19	7916283	8127015	41	-0.4622	NEUTRAL	NA	10	"CCL25,CTXN1,ELAVL1,EVI5L,LRRC8E,MAP2K7,PRR36,SNAPC2,TGFBR3L,TIMM44"
TCGA.AA.3693	19	7954239	10050183	383	-0.4868	NEUTRAL	NA	51	"ACTL9,ADAMTS10,ANGPTL4,CCL25,CD320,CERS4,CTXN1,ELAVL1,FBN3,FBXL12,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L1,MUC16,MYO1F,NDUFA7,OLFM2,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,PIN1,PRAM1,RAB11B,RPS28,SNAPC2,TGFBR3L,TIMM44,UBL5,ZNF121,ZNF177,ZNF266,ZNF317,ZNF414,ZNF426,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.AA.3930.01A	19	7992073	19825131	2457	0.2734	NEUTRAL	NA	329	Too-Many
TCGA.AG.3906.01A	19	8005934	8168418	32	0.157	NEUTRAL	NA	4	"CCL25,ELAVL1,FBN3,TIMM44"
TCGA.AF.3914.01A	19	8032401	10197554	387	-0.1499	NEUTRAL	NA	48	"ACTL9,ADAMTS10,ANGPTL4,C19orf66,CCL25,CD320,CERS4,COL5A3,ELAVL1,FBN3,FBXL12,HNRNPM,KANK3,MARCH2,MBD3L1,MUC16,MYO1F,NDUFA7,OLFM2,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,PIN1,PRAM1,RAB11B,RDH8,RPS28,UBL5,ZNF121,ZNF177,ZNF266,ZNF317,ZNF414,ZNF426,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.AA.3872	19	8118949	19892795	2091	0.1455	NEUTRAL	NA	327	Too-Many
TCGA.AA.A01Q.01A	19	8120987	8165723	23	0.1171	NEUTRAL	NA	2	"CCL25,FBN3"
TCGA.CK.5914.01A	19	8130756	8151909	10	0.0664	NEUTRAL	NA	1	FBN3
TCGA.AF.2689	19	8131239	46575802	7315	0.2767	NEUTRAL	NA	725	Too-Many
TCGA.AG.3909.01A	19	8146190	8399162	61	0.2034	NEUTRAL	NA	6	"CD320,CERS4,FBN3,KANK3,NDUFA7,RPS28"
TCGA.AA.A00O.01A	19	8148100	8657600	110	-0.1026	NEUTRAL	NA	14	"ADAMTS10,ANGPTL4,CD320,CERS4,FBN3,HNRNPM,KANK3,MARCH2,MYO1F,NDUFA7,PRAM1,RAB11B,RPS28,ZNF414"
TCGA.AA.A01Q.01A	19	8167571	8669855	105	-0.3256	NEUTRAL	NA	14	"ADAMTS10,ANGPTL4,CD320,CERS4,FBN3,HNRNPM,KANK3,MARCH2,MYO1F,NDUFA7,PRAM1,RAB11B,RPS28,ZNF414"
TCGA.AG.3906.01A	19	8170954	8186095	12	-0.3248	NEUTRAL	NA	1	FBN3
TCGA.AG.3891.01A	19	8170954	8188307	13	-0.2061	NEUTRAL	NA	1	FBN3
TCGA.AG.A015.01A	19	8183729	9054194	180	-0.25	NEUTRAL	NA	19	"ACTL9,ADAMTS10,ANGPTL4,CD320,CERS4,FBN3,HNRNPM,KANK3,MARCH2,MBD3L1,MUC16,MYO1F,NDUFA7,OR2Z1,PRAM1,RAB11B,RPS28,ZNF414,ZNF558"
TCGA.AG.3906.01A	19	8188307	8206549	11	0.2163	NEUTRAL	NA	1	FBN3
TCGA.CK.5914.01A	19	8188307	8953358	125	-0.0461	NEUTRAL	NA	18	"ACTL9,ADAMTS10,ANGPTL4,CD320,CERS4,FBN3,HNRNPM,KANK3,MARCH2,MBD3L1,MYO1F,NDUFA7,OR2Z1,PRAM1,RAB11B,RPS28,ZNF414,ZNF558"
TCGA.AG.3891.01A	19	8188659	9577213	234	0.2563	NEUTRAL	NA	33	"ACTL9,ADAMTS10,ANGPTL4,CD320,CERS4,FBN3,HNRNPM,KANK3,MARCH2,MBD3L1,MUC16,MYO1F,NDUFA7,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,PRAM1,RAB11B,RPS28,ZNF177,ZNF266,ZNF317,ZNF414,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF699"
TCGA.AG.3611.01A	19	8191140	8315914	12	0.2499	NEUTRAL	NA	2	"CERS4,FBN3"
TCGA.AA.3861.01A	19	8209709	14828437	1278	0.2327	NEUTRAL	NA	186	Too-Many
TCGA.AG.3906.01A	19	8211938	8326541	9	-0.3986	NEUTRAL	NA	2	"CERS4,FBN3"
TCGA.AA.A00N.01A	19	8367310	8509841	33	-0.283	NEUTRAL	NA	8	"ANGPTL4,CD320,HNRNPM,KANK3,MARCH2,NDUFA7,RAB11B,RPS28"
TCGA.AG.3611.01A	19	8367310	9529100	122	0.1878	NEUTRAL	NA	30	"ACTL9,ADAMTS10,ANGPTL4,CD320,HNRNPM,KANK3,MARCH2,MBD3L1,MUC16,MYO1F,NDUFA7,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,PRAM1,RAB11B,RPS28,ZNF177,ZNF266,ZNF317,ZNF414,ZNF558,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.AA.A010.01A	19	8376343	8509841	27	-0.2875	NEUTRAL	NA	7	"ANGPTL4,HNRNPM,KANK3,MARCH2,NDUFA7,RAB11B,RPS28"
TCGA.AG.4009.01A	19	8381343	8606766	50	0.1134	NEUTRAL	NA	10	"ANGPTL4,HNRNPM,KANK3,MARCH2,MYO1F,NDUFA7,PRAM1,RAB11B,RPS28,ZNF414"
TCGA.AA.3862.01A	19	8399162	11888374	755	0.0193	NEUTRAL	NA	99	"ACP5,ACTL9,ADAMTS10,ANGPTL4,ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,C19orf80,CARM1,CCDC151,CCDC159,CDC37,CDKN2D,CNN1,COL5A3,DNM2,DNMT1,DOCK6,ECSIT,EIF3G,ELAVL3,ELOF1,EPOR,FBXL12,FDX1L,HNRNPM,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK2,KANK3,KEAP1,KRI1,LDLR,LPPR2,MARCH2,MBD3L1,MRPL4,MUC16,MYO1F,OLFM2,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,P2RY11,PDE4A,PIN1,PPAN,PPAN-P2RY11,PRAM1,PRKCSH,QTRT1,RAB11B,RAB3D,RAVER1,RDH8,RGL3,S1PR2,S1PR5,SLC44A2,SMARCA4,SPC24,SWSAP1,TMED1,TMEM205,TSPAN16,TYK2,UBL5,YIPF2,ZGLP1,ZNF121,ZNF177,ZNF266,ZNF317,ZNF414,ZNF426,ZNF441,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF627,ZNF653,ZNF699,ZNF812,ZNF823,ZNF846"
TCGA.AG.3906.01A	19	8430788	8564050	31	0.256	NEUTRAL	NA	5	"ANGPTL4,HNRNPM,MARCH2,PRAM1,RAB11B"
TCGA.AG.3909.01A	19	8486674	8503244	4	0.2788	NEUTRAL	NA	1	2-Mar
TCGA.AA.A00A.01A	19	8550496	8953358	29	0.3512	NEUTRAL	NA	9	"ACTL9,ADAMTS10,HNRNPM,MBD3L1,MYO1F,OR2Z1,PRAM1,ZNF414,ZNF558"
TCGA.AA.A00Q.01A	19	8550496	9203869	76	0.3747	NEUTRAL	NA	10	"ACTL9,ADAMTS10,HNRNPM,MBD3L1,MUC16,MYO1F,OR2Z1,PRAM1,ZNF414,ZNF558"
TCGA.AA.A00N.01A	19	8555005	8969255	63	-0.2486	NEUTRAL	NA	9	"ACTL9,ADAMTS10,MBD3L1,MUC16,MYO1F,OR2Z1,PRAM1,ZNF414,ZNF558"
TCGA.AG.A01W.01A	19	8555728	8794234	23	0.0782	NEUTRAL	NA	4	"ADAMTS10,MYO1F,PRAM1,ZNF414"
TCGA.AG.3605.01A	19	8555752	17296672	98	0.0235	NEUTRAL	NA	229	Too-Many
TCGA.AG.3909.01A	19	8564050	8645750	23	-0.0235	NEUTRAL	NA	4	"ADAMTS10,MYO1F,PRAM1,ZNF414"
TCGA.AA.A010.01A	19	8601154	8657600	23	-0.3772	NEUTRAL	NA	2	"ADAMTS10,MYO1F"
TCGA.AG.3906.01A	19	8604770	8620495	11	-0.0797	NEUTRAL	NA	1	MYO1F
TCGA.AA.A00O.01A	19	8665785	9580265	144	0.2741	NEUTRAL	NA	20	"ACTL9,ADAMTS10,MBD3L1,MUC16,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,ZNF177,ZNF266,ZNF317,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF699"
TCGA.AG.3906.01A	19	8669855	8995570	29	-0.001	NEUTRAL	NA	6	"ACTL9,ADAMTS10,MBD3L1,MUC16,OR2Z1,ZNF558"
TCGA.AG.3909.01A	19	8670473	8953358	10	0.0097	NEUTRAL	NA	5	"ACTL9,ADAMTS10,MBD3L1,OR2Z1,ZNF558"
TCGA.AA.A01Q.01A	19	8670473	9033568	37	0.3483	NEUTRAL	NA	6	"ACTL9,ADAMTS10,MBD3L1,MUC16,OR2Z1,ZNF558"
TCGA.DM.A1HA	19	8750969	43643377	6616	-0.029	NEUTRAL	NA	615	Too-Many
TCGA.AA.3844	19	8787026	9040984	54	0.0415	NEUTRAL	NA	5	"ACTL9,MBD3L1,MUC16,OR2Z1,ZNF558"
TCGA.AA.A010.01A	19	8807754	9089483	105	0.1022	NEUTRAL	NA	5	"ACTL9,MBD3L1,MUC16,OR2Z1,ZNF558"
TCGA.AG.A01W.01A	19	8888458	8917238	14	-0.232	NEUTRAL	NA	0	None
TCGA.AA.3967.01A	19	8923753	9054194	85	-0.4672	NEUTRAL	NA	3	"MBD3L1,MUC16,ZNF558"
TCGA.AA.A00D.01A	19	8932622	9009541	20	0.0076	NEUTRAL	NA	3	"MBD3L1,MUC16,ZNF558"
TCGA.AG.A01W.01A	19	8934265	8951715	6	-0.4281	NEUTRAL	NA	1	ZNF558
TCGA.A6.5665	19	8950883	59095125	10215	-0.3508	NEUTRAL	NA	1122	Too-Many
TCGA.AG.A01L.01A	19	8953358	8997050	23	-0.1821	NEUTRAL	NA	2	"MBD3L1,MUC16"
TCGA.AG.A00C.01A	19	8966601	9324523	104	-0.1776	NEUTRAL	NA	7	"MUC16,OR1M1,OR7D2,OR7G1,OR7G2,OR7G3,ZNF317"
TCGA.AA.A00A.01A	19	8976228	9089483	37	-0.2398	NEUTRAL	NA	1	MUC16
TCGA.AG.3906.01A	19	8995880	9024106	45	0.3047	NEUTRAL	NA	1	MUC16
TCGA.AG.A01L.01A	19	8997364	9006610	16	-0.4964	NEUTRAL	NA	1	MUC16
TCGA.EI.6513	19	8999310	11604229	456	-0.0563	NEUTRAL	NA	79	"ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,C19orf80,CARM1,CCDC151,CCDC159,CDC37,CDKN2D,COL5A3,DNM2,DNMT1,DOCK6,EIF3G,ELAVL3,EPOR,FBXL12,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK2,KEAP1,KRI1,LDLR,LPPR2,MRPL4,MUC16,OLFM2,OR1M1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,P2RY11,PDE4A,PIN1,PPAN,PPAN-P2RY11,PRKCSH,QTRT1,RAB3D,RAVER1,RDH8,RGL3,S1PR2,S1PR5,SLC44A2,SMARCA4,SPC24,SWSAP1,TMED1,TMEM205,TSPAN16,TYK2,UBL5,YIPF2,ZGLP1,ZNF121,ZNF177,ZNF266,ZNF317,ZNF426,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF653,ZNF699,ZNF812,ZNF846"
TCGA.AG.A01L.01A	19	9007439	9054194	43	-0.1632	NEUTRAL	NA	1	MUC16
TCGA.CK.4948.01B	19	9007726	9089483	57	0.1679	NEUTRAL	NA	1	MUC16
TCGA.AA.A00D.01A	19	9010888	9203869	25	-0.2831	NEUTRAL	NA	1	MUC16
TCGA.AG.3906.01A	19	9024402	9054194	17	-0.1043	NEUTRAL	NA	1	MUC16
TCGA.AA.A01Q.01A	19	9045537	9089483	18	-0.2768	NEUTRAL	NA	1	MUC16
TCGA.AA.3844	19	9052235	9088329	38	-0.3861	NEUTRAL	NA	1	MUC16
TCGA.AA.3967.01A	19	9056136	10250751	174	-0.028	NEUTRAL	NA	34	"ANGPTL6,C19orf66,COL5A3,DNMT1,EIF3G,FBXL12,MUC16,OLFM2,OR1M1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,P2RY11,PIN1,PPAN,PPAN-P2RY11,RDH8,UBL5,ZNF121,ZNF177,ZNF266,ZNF317,ZNF426,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.AA.3982	19	9056940	9088329	37	-0.2879	NEUTRAL	NA	1	MUC16
TCGA.AG.3906.01A	19	9071133	9236641	13	0.1522	NEUTRAL	NA	4	"MUC16,OR1M1,OR7G1,OR7G2"
TCGA.AG.A016.01A	19	9073815	9236641	11	-0.4499	NEUTRAL	NA	4	"MUC16,OR1M1,OR7G1,OR7G2"
TCGA.AG.A01L.01A	19	9073815	59082320	6261	0.0561	NEUTRAL	NA	1121	Too-Many
TCGA.AG.A015.01A	19	9074521	24310438	2004	-0.1756	NEUTRAL	NA	339	Too-Many
TCGA.AA.3844	19	9090761	9484934	86	0.0763	NEUTRAL	NA	13	"MUC16,OR1M1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,ZNF177,ZNF317,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.AA.3982	19	9090761	9485228	87	0.2941	NEUTRAL	NA	13	"MUC16,OR1M1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,ZNF177,ZNF317,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.AM.5820	19	9097347	9195067	23	-0.0835	NEUTRAL	NA	0	None
TCGA.AA.3712	19	9097347	12296818	545	0.2454	NEUTRAL	NA	97	"ACP5,ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,C19orf80,CARM1,CCDC151,CCDC159,CDC37,CDKN2D,CNN1,COL5A3,DNM2,DNMT1,DOCK6,ECSIT,EIF3G,ELAVL3,ELOF1,EPOR,FBXL12,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK2,KEAP1,KRI1,LDLR,LPPR2,MRPL4,OLFM2,OR1M1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,P2RY11,PDE4A,PIN1,PPAN,PPAN-P2RY11,PRKCSH,QTRT1,RAB3D,RAVER1,RDH8,RGL3,S1PR2,S1PR5,SLC44A2,SMARCA4,SPC24,SWSAP1,TMED1,TMEM205,TSPAN16,TYK2,UBL5,YIPF2,ZGLP1,ZNF121,ZNF136,ZNF177,ZNF20,ZNF266,ZNF317,ZNF426,ZNF433,ZNF439,ZNF440,ZNF441,ZNF491,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF625,ZNF627,ZNF653,ZNF69,ZNF699,ZNF700,ZNF763,ZNF812,ZNF823,ZNF844,ZNF846,ZNF878"
TCGA.AG.A01W.01A	19	9098178	9539676	50	-0.0646	NEUTRAL	NA	13	"OR1M1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,ZNF177,ZNF266,ZNF317,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.CK.4948.01B	19	9203869	46916403	4998	-0.14	NEUTRAL	NA	712	Too-Many
TCGA.AA.A00D.01A	19	9212915	9362042	12	0.3169	NEUTRAL	NA	7	"OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,ZNF317"
TCGA.AM.5820	19	9246204	12772089	570	0.0253	NEUTRAL	NA	103	Too-Many
TCGA.AG.A016.01A	19	9266607	9270742	5	0.0185	NEUTRAL	NA	1	ZNF317
TCGA.AG.3906.01A	19	9266607	9529100	30	-0.1917	NEUTRAL	NA	9	"OR7D2,OR7D4,OR7E24,ZNF177,ZNF266,ZNF317,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.AA.A00N.01A	19	9296426	9324523	6	0.108	NEUTRAL	NA	1	OR7D2
TCGA.AG.3909.01A	19	9296426	9362042	4	0.0994	NEUTRAL	NA	3	"OR7D2,OR7D4,OR7E24"
TCGA.CK.5914.01A	19	9296426	9452354	17	-0.4028	NEUTRAL	NA	6	"OR7D2,OR7D4,OR7E24,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.A6.3808.01A	19	9296426	9958668	71	-0.0739	NEUTRAL	NA	18	"FBXL12,OR7D2,OR7D4,OR7E24,PIN1,UBL5,ZNF121,ZNF177,ZNF266,ZNF426,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.AA.A010.01A	19	9297872	9529100	27	0.1565	NEUTRAL	NA	8	"OR7D2,OR7D4,OR7E24,ZNF177,ZNF266,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.AG.4009.01A	19	9361668	9415685	7	-0.2397	NEUTRAL	NA	2	"OR7E24,ZNF699"
TCGA.AG.A00C.01A	19	9361668	10488881	214	0.1712	NEUTRAL	NA	36	"ANGPTL6,C19orf66,COL5A3,DNMT1,EIF3G,FBXL12,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,MRPL4,OLFM2,OR7E24,P2RY11,PIN1,PPAN,PPAN-P2RY11,RAVER1,RDH8,S1PR2,TYK2,UBL5,ZGLP1,ZNF121,ZNF177,ZNF266,ZNF426,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.AA.A01Q.01A	19	9362042	10202706	115	0.0563	NEUTRAL	NA	20	"C19orf66,COL5A3,FBXL12,OLFM2,OR7E24,PIN1,RDH8,UBL5,ZNF121,ZNF177,ZNF266,ZNF426,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.AG.A016.01A	19	9451722	19825131	1816	-0.1193	NEUTRAL	NA	298	Too-Many
TCGA.DC.6158	19	9470826	18371438	1594	-0.3476	NEUTRAL	NA	249	Too-Many
TCGA.AA.A00N.01A	19	9488907	9529100	11	0.0057	NEUTRAL	NA	3	"ZNF177,ZNF266,ZNF559-ZNF177"
TCGA.AG.3909.01A	19	9488907	10169212	106	0.1202	NEUTRAL	NA	16	"COL5A3,FBXL12,OLFM2,PIN1,RDH8,UBL5,ZNF121,ZNF177,ZNF266,ZNF426,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF812,ZNF846"
TCGA.AA.3844	19	9494265	9978465	72	-0.051	NEUTRAL	NA	12	"FBXL12,OLFM2,PIN1,UBL5,ZNF121,ZNF266,ZNF426,ZNF560,ZNF561,ZNF562,ZNF812,ZNF846"
TCGA.AA.3982	19	9494265	19966900	1813	0.3785	NEUTRAL	NA	296	Too-Many
TCGA.CK.5914.01A	19	9523914	9581026	11	0.1222	NEUTRAL	NA	2	"ZNF266,ZNF560"
TCGA.AG.3611.01A	19	9577213	9585913	9	-0.122	NEUTRAL	NA	1	ZNF560
TCGA.AG.4009.01A	19	9577213	9585913	9	-0.1296	NEUTRAL	NA	1	ZNF560
TCGA.AA.A00O.01A	19	9581026	11099946	282	-0.1851	NEUTRAL	NA	48	"ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,CARM1,CDC37,CDKN2D,COL5A3,DNM2,DNMT1,EIF3G,FBXL12,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KEAP1,KRI1,MRPL4,OLFM2,P2RY11,PDE4A,PIN1,PPAN,PPAN-P2RY11,QTRT1,RAVER1,RDH8,S1PR2,S1PR5,SLC44A2,SMARCA4,TMED1,TYK2,UBL5,YIPF2,ZGLP1,ZNF121,ZNF426,ZNF560,ZNF561,ZNF562,ZNF812,ZNF846"
TCGA.AG.A01W.01A	19	9581835	9734932	17	-0.489	NEUTRAL	NA	4	"ZNF121,ZNF426,ZNF560,ZNF561"
TCGA.CK.5914.01A	19	9581914	9678704	13	-0.2326	NEUTRAL	NA	3	"ZNF121,ZNF426,ZNF560"
TCGA.AA.A010.01A	19	9639055	9730024	16	0.3403	NEUTRAL	NA	3	"ZNF121,ZNF426,ZNF561"
TCGA.AG.3891.01A	19	9639055	10071069	38	0.3578	NEUTRAL	NA	11	"COL5A3,FBXL12,OLFM2,PIN1,UBL5,ZNF121,ZNF426,ZNF561,ZNF562,ZNF812,ZNF846"
TCGA.AG.3906.01A	19	9639055	10079296	42	0.0247	NEUTRAL	NA	11	"COL5A3,FBXL12,OLFM2,PIN1,UBL5,ZNF121,ZNF426,ZNF561,ZNF562,ZNF812,ZNF846"
TCGA.AA.A00N.01A	19	9720928	9730024	7	0.365	NEUTRAL	NA	1	ZNF561
TCGA.AG.A01W.01A	19	9736529	9820719	9	0.0579	NEUTRAL	NA	2	"ZNF562,ZNF812"
TCGA.CK.5914.01A	19	9770003	9958668	15	-0.3481	NEUTRAL	NA	6	"FBXL12,PIN1,UBL5,ZNF562,ZNF812,ZNF846"
TCGA.AA.3869	19	9779307	59095125	10017	-0.0245	NEUTRAL	NA	1103	Too-Many
TCGA.AA.A010.01A	19	9868134	10197023	72	0.3206	NEUTRAL	NA	8	"C19orf66,COL5A3,FBXL12,OLFM2,PIN1,RDH8,UBL5,ZNF846"
TCGA.AG.4009.01A	19	9938944	9940566	3	-0.4555	NEUTRAL	NA	1	UBL5
TCGA.AG.A01W.01A	19	9940020	9945795	9	-0.1331	NEUTRAL	NA	1	UBL5
TCGA.AA.A00N.01A	19	9967446	10169212	56	0.1756	NEUTRAL	NA	3	"COL5A3,OLFM2,RDH8"
TCGA.A6.3807	19	9982333	11656994	251	0.1676	NEUTRAL	NA	57	"ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,C19orf80,CARM1,CCDC151,CCDC159,CDC37,CDKN2D,CNN1,COL5A3,DNM2,DNMT1,DOCK6,ECSIT,EIF3G,ELAVL3,EPOR,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK2,KEAP1,KRI1,LDLR,LPPR2,MRPL4,OLFM2,P2RY11,PDE4A,PPAN,PPAN-P2RY11,PRKCSH,QTRT1,RAB3D,RAVER1,RDH8,RGL3,S1PR2,S1PR5,SLC44A2,SMARCA4,SPC24,SWSAP1,TMED1,TMEM205,TSPAN16,TYK2,YIPF2,ZGLP1,ZNF653"
TCGA.AA.3844	19	9982333	20163632	1790	0.243	NEUTRAL	NA	288	Too-Many
TCGA.AA.3693	19	10062448	10166374	28	0.1432	NEUTRAL	NA	2	"COL5A3,RDH8"
TCGA.A6.3808.01A	19	10073428	10084772	13	-0.2895	NEUTRAL	NA	1	COL5A3
TCGA.AG.3891.01A	19	10073428	10091705	20	-0.1543	NEUTRAL	NA	1	COL5A3
TCGA.AG.4009.01A	19	10076943	10084772	11	0.1738	NEUTRAL	NA	1	COL5A3
TCGA.AG.A01W.01A	19	10077989	10079425	3	-0.42	NEUTRAL	NA	1	COL5A3
TCGA.AG.3906.01A	19	10079955	10089520	12	-0.457	NEUTRAL	NA	1	COL5A3
TCGA.AG.A01W.01A	19	10081250	10107366	12	0.1595	NEUTRAL	NA	1	COL5A3
TCGA.AG.3906.01A	19	10089790	10381768	93	0.1132	NEUTRAL	NA	12	"ANGPTL6,C19orf66,COL5A3,DNMT1,EIF3G,ICAM1,MRPL4,P2RY11,PPAN,PPAN-P2RY11,RDH8,S1PR2"
TCGA.AG.3891.01A	19	10092681	10230257	48	0.292	NEUTRAL	NA	8	"ANGPTL6,C19orf66,COL5A3,EIF3G,P2RY11,PPAN,PPAN-P2RY11,RDH8"
TCGA.AG.A01W.01A	19	10117976	10258639	35	-0.423	NEUTRAL	NA	9	"ANGPTL6,C19orf66,COL5A3,DNMT1,EIF3G,P2RY11,PPAN,PPAN-P2RY11,RDH8"
TCGA.CK.5914.01A	19	10197023	10828937	210	-0.0889	NEUTRAL	NA	29	"ANGPTL6,AP1M2,ATG4D,C19orf66,CDC37,CDKN2D,DNM2,DNMT1,EIF3G,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KEAP1,KRI1,MRPL4,P2RY11,PDE4A,PPAN,PPAN-P2RY11,QTRT1,RAVER1,S1PR2,S1PR5,SLC44A2,TYK2,ZGLP1"
TCGA.AA.A00N.01A	19	10197023	11213292	297	-0.3997	NEUTRAL	NA	36	"ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,CARM1,CDC37,CDKN2D,DNM2,DNMT1,EIF3G,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KEAP1,KRI1,LDLR,MRPL4,P2RY11,PDE4A,PPAN,PPAN-P2RY11,QTRT1,RAVER1,S1PR2,S1PR5,SLC44A2,SMARCA4,TMED1,TYK2,YIPF2,ZGLP1"
TCGA.AG.4009.01A	19	10197554	10220537	11	-0.278	NEUTRAL	NA	4	"ANGPTL6,C19orf66,PPAN,PPAN-P2RY11"
TCGA.AA.A01Q.01A	19	10203255	10463083	89	-0.371	NEUTRAL	NA	17	"ANGPTL6,C19orf66,DNMT1,EIF3G,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,MRPL4,P2RY11,PPAN,PPAN-P2RY11,RAVER1,S1PR2,TYK2,ZGLP1"
TCGA.A6.3808.01A	19	10216998	10488881	113	-0.2373	NEUTRAL	NA	15	"DNMT1,EIF3G,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,MRPL4,P2RY11,PPAN,PPAN-P2RY11,RAVER1,S1PR2,TYK2,ZGLP1"
TCGA.AF.3914.01A	19	10216998	10602241	128	-0.1753	NEUTRAL	NA	18	"CDC37,DNMT1,EIF3G,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,KEAP1,MRPL4,P2RY11,PDE4A,PPAN,PPAN-P2RY11,RAVER1,S1PR2,TYK2,ZGLP1"
TCGA.AA.A010.01A	19	10226592	10381768	49	0.3083	NEUTRAL	NA	5	"DNMT1,EIF3G,ICAM1,MRPL4,S1PR2"
TCGA.AG.3909.01A	19	10244274	10334498	37	0.1129	NEUTRAL	NA	2	"DNMT1,S1PR2"
TCGA.AG.3891.01A	19	10244862	10251409	8	-0.1885	NEUTRAL	NA	1	DNMT1
TCGA.AA.3967.01A	19	10251409	10421125	51	0.3619	NEUTRAL	NA	8	"DNMT1,FDX1L,ICAM1,ICAM4,ICAM5,MRPL4,S1PR2,ZGLP1"
TCGA.AG.A01W.01A	19	10259201	10265347	6	0.3401	NEUTRAL	NA	1	DNMT1
TCGA.AG.A01W.01A	19	10266984	10424874	59	-0.3603	NEUTRAL	NA	8	"DNMT1,FDX1L,ICAM1,ICAM4,ICAM5,MRPL4,S1PR2,ZGLP1"
TCGA.AA.3509.01A	19	10305439	12511782	478	-0.0928	NEUTRAL	NA	69	"ACP5,AP1M2,ATG4D,C19orf38,C19orf52,C19orf80,CARM1,CCDC151,CCDC159,CDC37,CDKN2D,CNN1,DNM2,DNMT1,DOCK6,ECSIT,ELAVL3,ELOF1,EPOR,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK2,KEAP1,KRI1,LDLR,LPPR2,MRPL4,PDE4A,PRKCSH,QTRT1,RAB3D,RAVER1,RGL3,S1PR2,S1PR5,SLC44A2,SMARCA4,SPC24,SWSAP1,TMED1,TMEM205,TSPAN16,TYK2,YIPF2,ZGLP1,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF491,ZNF563,ZNF625,ZNF627,ZNF653,ZNF69,ZNF700,ZNF763,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.AA.A01F.01A	19	10305439	42392100	2929	0.1172	NEUTRAL	NA	552	Too-Many
TCGA.DY.A1DF	19	10356431	11407314	151	0.3452	NEUTRAL	NA	33	"AP1M2,ATG4D,C19orf38,C19orf52,C19orf80,CARM1,CDC37,CDKN2D,DNM2,DOCK6,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK2,KEAP1,KRI1,LDLR,MRPL4,PDE4A,QTRT1,RAVER1,S1PR5,SLC44A2,SMARCA4,SPC24,TMED1,TSPAN16,TYK2,YIPF2,ZGLP1"
TCGA.AG.3909.01A	19	10370253	10488881	43	-0.1356	NEUTRAL	NA	9	"FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,MRPL4,RAVER1,TYK2,ZGLP1"
TCGA.AG.4009.01A	19	10385430	10421475	14	-0.208	NEUTRAL	NA	5	"FDX1L,ICAM1,ICAM4,ICAM5,ZGLP1"
TCGA.AG.3906.01A	19	10421125	10787799	88	0.2955	NEUTRAL	NA	14	"AP1M2,ATG4D,CDC37,CDKN2D,FDX1L,ICAM3,ILF3,KEAP1,KRI1,PDE4A,RAVER1,S1PR5,SLC44A2,TYK2"
TCGA.AA.3967.01A	19	10421475	10685541	77	0.0365	NEUTRAL	NA	12	"AP1M2,ATG4D,CDC37,CDKN2D,FDX1L,ICAM3,KEAP1,KRI1,PDE4A,RAVER1,S1PR5,TYK2"
TCGA.AA.A010.01A	19	10426307	10461473	19	-0.1588	NEUTRAL	NA	4	"FDX1L,ICAM3,RAVER1,TYK2"
TCGA.AG.A01W.01A	19	10426466	10538733	30	0.0712	NEUTRAL	NA	6	"CDC37,FDX1L,ICAM3,PDE4A,RAVER1,TYK2"
TCGA.AA.A01Q.01A	19	10463574	10561267	23	0.1601	NEUTRAL	NA	3	"CDC37,PDE4A,TYK2"
TCGA.AA.A010.01A	19	10477043	10503700	5	-0.1318	NEUTRAL	NA	2	"CDC37,TYK2"
TCGA.AG.A01W.01A	19	10544672	10650249	24	-0.39	NEUTRAL	NA	3	"KEAP1,PDE4A,S1PR5"
TCGA.AA.A010.01A	19	10570054	10679162	30	-0.1035	NEUTRAL	NA	6	"ATG4D,CDKN2D,KEAP1,KRI1,PDE4A,S1PR5"
TCGA.AG.3575	19	10577842	59095125	9909	0.0174	NEUTRAL	NA	1076	Too-Many
TCGA.AA.3693	19	10666449	34599807	4709	0.1197	NEUTRAL	NA	320	Too-Many
TCGA.AG.A01W.01A	19	10673148	10780154	19	-0.3957	NEUTRAL	NA	5	"AP1M2,CDKN2D,ILF3,KRI1,SLC44A2"
TCGA.AG.3909.01A	19	10683666	10697785	11	0.1668	NEUTRAL	NA	1	AP1M2
TCGA.A6.3808.01A	19	10736876	11130220	96	-0.2539	NEUTRAL	NA	10	"C19orf38,C19orf52,CARM1,DNM2,ILF3,QTRT1,SLC44A2,SMARCA4,TMED1,YIPF2"
TCGA.AA.3967.01A	19	10736876	15659890	914	0.0697	NEUTRAL	NA	137	Too-Many
TCGA.EI.6509	19	10742169	19848484	1602	0.325	NEUTRAL	NA	256	Too-Many
TCGA.AG.A01W.01A	19	10783899	10807639	11	0.1559	NEUTRAL	NA	1	ILF3
TCGA.AG.3906.01A	19	10789233	11200168	83	0.011	NEUTRAL	NA	10	"C19orf38,C19orf52,CARM1,DNM2,ILF3,LDLR,QTRT1,SMARCA4,TMED1,YIPF2"
TCGA.AG.A00C.01A	19	10789233	11362746	136	0.1265	NEUTRAL	NA	14	"C19orf38,C19orf52,C19orf80,CARM1,DNM2,DOCK6,ILF3,KANK2,LDLR,QTRT1,SMARCA4,SPC24,TMED1,YIPF2"
TCGA.AA.A010.01A	19	10789754	10797990	10	-0.4145	NEUTRAL	NA	1	ILF3
TCGA.AF.3914.01A	19	10792632	11039449	51	-0.0171	NEUTRAL	NA	8	"C19orf38,C19orf52,CARM1,DNM2,ILF3,QTRT1,TMED1,YIPF2"
TCGA.AA.A004.01A	19	10799808	19766635	1344	-0.0077	NEUTRAL	NA	253	Too-Many
TCGA.AA.A01Q.01A	19	10812574	10897222	11	-0.0296	NEUTRAL	NA	2	"DNM2,QTRT1"
TCGA.AG.A01W.01A	19	10840847	10984574	30	-0.0294	NEUTRAL	NA	4	"C19orf38,CARM1,DNM2,TMED1"
TCGA.CK.5914.01A	19	10904344	10946658	19	-0.161	NEUTRAL	NA	2	"DNM2,TMED1"
TCGA.AG.3909.01A	19	10941589	11172410	46	-0.2235	NEUTRAL	NA	7	"C19orf38,C19orf52,CARM1,DNM2,SMARCA4,TMED1,YIPF2"
TCGA.AA.A010.01A	19	10959120	10960905	2	-0.3896	NEUTRAL	NA	1	C19orf38
TCGA.CK.5914.01A	19	10968923	13423442	534	-0.1685	NEUTRAL	NA	81	"ACP5,ASNA1,BEST2,C19orf38,C19orf43,C19orf52,C19orf80,CACNA1A,CALR,CARM1,CCDC151,CCDC159,CNN1,DAND5,DHPS,DNASE2,DOCK6,ECSIT,ELAVL3,ELOF1,EPOR,FARSA,FBXW9,GADD45GIP1,GCDH,HOOK2,IER2,JUNB,KANK2,KLF1,LDLR,LPPR2,LYL1,MAN2B1,MAST1,NACC1,NFIX,PRDX2,PRKCSH,RAB3D,RAD23A,RGL3,RNASEH2A,RTBDN,SMARCA4,SPC24,STX10,SWSAP1,SYCE2,TMEM205,TNPO2,TRMT1,TSPAN16,WDR83,WDR83OS,YIPF2,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF627,ZNF653,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.AA.A010.01A	19	11015575	11138418	38	-0.0325	NEUTRAL	NA	4	"C19orf52,CARM1,SMARCA4,YIPF2"
TCGA.AA.A01Q.01A	19	11030234	11097532	14	0.0827	NEUTRAL	NA	4	"C19orf52,CARM1,SMARCA4,YIPF2"
TCGA.AG.4009.01A	19	11036326	11151957	27	-0.153	NEUTRAL	NA	3	"C19orf52,SMARCA4,YIPF2"
TCGA.AG.A01W.01A	19	11061158	11082291	7	-0.246	NEUTRAL	NA	1	SMARCA4
TCGA.AA.A01Q.01A	19	11098292	11172410	28	-0.4373	NEUTRAL	NA	1	SMARCA4
TCGA.AA.3549	19	11099774	46777506	6847	0.0665	NEUTRAL	NA	649	Too-Many
TCGA.AF.3914.01A	19	11105457	11594466	161	-0.0656	NEUTRAL	NA	18	"C19orf80,CCDC151,CCDC159,DOCK6,ELAVL3,EPOR,KANK2,LDLR,LPPR2,PRKCSH,RAB3D,RGL3,SMARCA4,SPC24,SWSAP1,TMEM205,TSPAN16,ZNF653"
TCGA.AG.A01W.01A	19	11141501	11184835	17	0.0141	NEUTRAL	NA	1	SMARCA4
TCGA.A6.3808.01A	19	11168884	11464077	89	-0.1815	NEUTRAL	NA	10	"C19orf80,CCDC159,DOCK6,KANK2,LDLR,RAB3D,SMARCA4,SPC24,TMEM205,TSPAN16"
TCGA.AA.A01Q.01A	19	11200168	11356207	39	0.1724	NEUTRAL	NA	5	"C19orf80,DOCK6,KANK2,LDLR,SPC24"
TCGA.AG.A01W.01A	19	11207227	16413652	920	-0.1988	NEUTRAL	NA	144	Too-Many
TCGA.DM.A0XD	19	11210003	20632399	1676	0.006	NEUTRAL	NA	252	Too-Many
TCGA.AG.3906.01A	19	11210882	11460249	72	0.3332	NEUTRAL	NA	9	"C19orf80,CCDC159,DOCK6,KANK2,LDLR,RAB3D,SPC24,TMEM205,TSPAN16"
TCGA.AG.3611.01A	19	11222151	16006286	625	0.209	NEUTRAL	NA	136	Too-Many
TCGA.AA.A010.01A	19	11277160	11303480	8	0.1202	NEUTRAL	NA	1	KANK2
TCGA.AG.4009.01A	19	11303480	11319314	8	-0.2669	NEUTRAL	NA	2	"DOCK6,KANK2"
TCGA.AG.3909.01A	19	11322435	11363422	28	0.2132	NEUTRAL	NA	2	"C19orf80,DOCK6"
TCGA.AA.A00N.01A	19	11327866	11354183	17	0.2807	NEUTRAL	NA	2	"C19orf80,DOCK6"
TCGA.AA.A010.01A	19	11332505	11350272	11	-0.1386	NEUTRAL	NA	1	DOCK6
TCGA.AG.4009.01A	19	11356207	11363422	4	-0.1567	NEUTRAL	NA	1	DOCK6
TCGA.AA.A010.01A	19	11406922	11409486	3	-0.4415	NEUTRAL	NA	1	TSPAN16
TCGA.AG.3909.01A	19	11406922	11447831	9	-0.4095	NEUTRAL	NA	2	"RAB3D,TSPAN16"
TCGA.AA.A01Q.01A	19	11406922	11546882	41	-0.2246	NEUTRAL	NA	10	"CCDC151,CCDC159,EPOR,LPPR2,PRKCSH,RAB3D,RGL3,SWSAP1,TMEM205,TSPAN16"
TCGA.AA.A010.01A	19	11411830	11537246	48	0.333	NEUTRAL	NA	9	"CCDC151,CCDC159,EPOR,LPPR2,RAB3D,RGL3,SWSAP1,TMEM205,TSPAN16"
TCGA.DY.A1DF	19	11458738	11755736	41	0.2762	NEUTRAL	NA	14	"ACP5,CCDC151,CCDC159,CNN1,ECSIT,ELAVL3,ELOF1,EPOR,LPPR2,PRKCSH,RGL3,SWSAP1,ZNF627,ZNF653"
TCGA.AG.3906.01A	19	11460582	11541460	35	-0.073	NEUTRAL	NA	6	"CCDC151,CCDC159,EPOR,LPPR2,RGL3,SWSAP1"
TCGA.AG.4009.01A	19	11515765	11536917	10	-0.0262	NEUTRAL	NA	2	"CCDC151,RGL3"
TCGA.AG.4009.01A	19	11537246	11598267	24	-0.4026	NEUTRAL	NA	4	"CCDC151,ELAVL3,PRKCSH,ZNF653"
TCGA.AA.A010.01A	19	11541460	11629837	35	-0.4527	NEUTRAL	NA	5	"CCDC151,ECSIT,ELAVL3,PRKCSH,ZNF653"
TCGA.AG.4009.01A	19	11606738	11624612	6	0.2305	NEUTRAL	NA	2	"ECSIT,ZNF653"
TCGA.AA.A01Q.01A	19	11606738	12768223	103	-0.0792	NEUTRAL	NA	30	"ACP5,CNN1,ECSIT,ELOF1,MAN2B1,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF627,ZNF653,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.AF.3914.01A	19	11606738	13192447	267	-0.1115	NEUTRAL	NA	54	"ACP5,ASNA1,BEST2,C19orf43,CALR,CNN1,DAND5,DHPS,DNASE2,ECSIT,ELOF1,FARSA,FBXW9,GADD45GIP1,GCDH,HOOK2,JUNB,KLF1,MAN2B1,MAST1,NFIX,PRDX2,RAD23A,RNASEH2A,RTBDN,SYCE2,TNPO2,WDR83,WDR83OS,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF627,ZNF653,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.A6.3807	19	11657058	12188265	102	-0.2366	NEUTRAL	NA	15	"ACP5,CNN1,ELOF1,ZNF433,ZNF439,ZNF440,ZNF441,ZNF491,ZNF627,ZNF69,ZNF700,ZNF763,ZNF823,ZNF844,ZNF878"
TCGA.AG.3906.01A	19	11687061	12543838	80	-0.1086	NEUTRAL	NA	21	"ACP5,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF491,ZNF563,ZNF625,ZNF627,ZNF69,ZNF700,ZNF763,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.AG.4009.01A	19	11708353	12154593	37	0.3667	NEUTRAL	NA	10	"ZNF433,ZNF439,ZNF440,ZNF441,ZNF491,ZNF627,ZNF69,ZNF700,ZNF763,ZNF823"
TCGA.AA.3862.01A	19	12128655	14828437	487	0.0802	NEUTRAL	NA	76	"ADGRE3,ADGRE5,ADGRL1,ASF1B,ASNA1,BEST2,C19orf43,C19orf53,C19orf57,C19orf67,CACNA1A,CALR,CC2D1A,CCDC130,CLEC17A,DAND5,DCAF15,DDX39A,DHPS,DNAJB1,DNASE2,FARSA,FBXW9,GADD45GIP1,GCDH,GIPC1,HOOK2,IER2,IL27RA,JUNB,KLF1,LOC113230,LYL1,MAN2B1,MAST1,MRI1,NACC1,NANOS3,NDUFB7,NFIX,PALM3,PKN1,PODNL1,PRDX2,PRKACA,PTGER1,RAD23A,RFX1,RLN3,RNASEH2A,RTBDN,SAMD1,STX10,SYCE2,TECR,TNPO2,TRMT1,WDR83,WDR83OS,ZNF136,ZNF20,ZNF333,ZNF433,ZNF44,ZNF442,ZNF443,ZNF490,ZNF563,ZNF564,ZNF625,ZNF709,ZNF791,ZNF799,ZNF844,ZNF878,ZSWIM4"
TCGA.A6.3808.01A	19	12128655	17273760	940	0.0247	NEUTRAL	NA	129	Too-Many
TCGA.AG.4009.01A	19	12157117	12739313	59	0.0092	NEUTRAL	NA	14	"ZNF136,ZNF20,ZNF44,ZNF442,ZNF443,ZNF490,ZNF563,ZNF564,ZNF625,ZNF709,ZNF791,ZNF799,ZNF844,ZNF878"
TCGA.A6.3807	19	12188316	12565695	70	0.3045	NEUTRAL	NA	9	"ZNF136,ZNF20,ZNF44,ZNF442,ZNF443,ZNF563,ZNF625,ZNF799,ZNF844"
TCGA.AA.A00Q.01A	19	12432035	14677535	306	0.3706	NEUTRAL	NA	66	"ADGRE5,ADGRL1,ASF1B,ASNA1,BEST2,C19orf43,C19orf53,C19orf57,C19orf67,CACNA1A,CALR,CC2D1A,CCDC130,DAND5,DCAF15,DDX39A,DHPS,DNAJB1,DNASE2,FARSA,FBXW9,GADD45GIP1,GCDH,GIPC1,HOOK2,IER2,IL27RA,JUNB,KLF1,LOC113230,LYL1,MAN2B1,MAST1,MRI1,NACC1,NANOS3,NDUFB7,NFIX,PALM3,PKN1,PODNL1,PRDX2,PRKACA,PTGER1,RAD23A,RFX1,RLN3,RNASEH2A,RTBDN,SAMD1,STX10,SYCE2,TECR,TNPO2,TRMT1,WDR83,WDR83OS,ZNF442,ZNF443,ZNF490,ZNF563,ZNF564,ZNF709,ZNF791,ZNF799,ZSWIM4"
TCGA.DM.A28M.01A	19	12541896	19789953	1591	-0.1647	NEUTRAL	NA	205	Too-Many
TCGA.AZ.4684.01A	19	12543838	21117733	1639	-0.2389	NEUTRAL	NA	215	Too-Many
TCGA.AG.3906.01A	19	12551641	12721819	16	0.2047	NEUTRAL	NA	5	"ZNF443,ZNF490,ZNF564,ZNF709,ZNF791"
TCGA.AA.3509.01A	19	12551641	17256157	887	-0.1318	NEUTRAL	NA	119	Too-Many
TCGA.AZ.6606	19	12577864	59095125	9542	0.2637	NEUTRAL	NA	1018	Too-Many
TCGA.EI.6513	19	12586503	13398234	73	-0.0125	NEUTRAL	NA	35	"ASNA1,BEST2,C19orf43,CACNA1A,CALR,DAND5,DHPS,DNASE2,FARSA,FBXW9,GADD45GIP1,GCDH,HOOK2,IER2,JUNB,KLF1,LYL1,MAN2B1,MAST1,NACC1,NFIX,PRDX2,RAD23A,RNASEH2A,RTBDN,STX10,SYCE2,TNPO2,TRMT1,WDR83,WDR83OS,ZNF490,ZNF564,ZNF709,ZNF791"
TCGA.AA.3841	19	12589173	34805796	4427	0.0626	NEUTRAL	NA	268	Too-Many
TCGA.A6.3807	19	12641231	13034044	38	-0.1772	NEUTRAL	NA	23	"ASNA1,BEST2,C19orf43,DHPS,DNASE2,FARSA,FBXW9,GCDH,HOOK2,JUNB,KLF1,MAN2B1,MAST1,PRDX2,RNASEH2A,RTBDN,SYCE2,TNPO2,WDR83,WDR83OS,ZNF490,ZNF564,ZNF791"
TCGA.AG.3906.01A	19	12757387	12848298	47	0.165	NEUTRAL	NA	7	"C19orf43,DHPS,FBXW9,MAN2B1,TNPO2,WDR83,WDR83OS"
TCGA.AM.5820	19	12774861	13416169	61	0.3461	NEUTRAL	NA	31	"ASNA1,BEST2,C19orf43,CACNA1A,CALR,DAND5,DHPS,DNASE2,FARSA,FBXW9,GADD45GIP1,GCDH,HOOK2,IER2,JUNB,KLF1,LYL1,MAN2B1,MAST1,NACC1,NFIX,PRDX2,RAD23A,RNASEH2A,RTBDN,STX10,SYCE2,TNPO2,TRMT1,WDR83,WDR83OS"
TCGA.AA.A01Q.01A	19	12801929	12831676	8	0.3525	NEUTRAL	NA	2	"FBXW9,TNPO2"
TCGA.AG.4009.01A	19	12805378	12848298	17	-0.4713	NEUTRAL	NA	3	"C19orf43,FBXW9,TNPO2"
TCGA.AA.A010.01A	19	12822103	12881709	26	-0.4636	NEUTRAL	NA	5	"ASNA1,BEST2,C19orf43,HOOK2,TNPO2"
TCGA.AA.3712	19	12848683	18288321	1052	0.2384	NEUTRAL	NA	142	Too-Many
TCGA.AG.4009.01A	19	12849303	12874055	12	0.0904	NEUTRAL	NA	3	"ASNA1,BEST2,HOOK2"
TCGA.AA.A01Q.01A	19	12875599	12885438	7	0.2392	NEUTRAL	NA	1	HOOK2
TCGA.AG.4009.01A	19	12907840	12936508	10	0.1383	NEUTRAL	NA	3	"PRDX2,RNASEH2A,RTBDN"
TCGA.AG.4009.01A	19	12939419	12995681	22	-0.4093	NEUTRAL	NA	4	"DNASE2,KLF1,MAST1,RTBDN"
TCGA.AA.A010.01A	19	12975576	12989146	10	-0.4586	NEUTRAL	NA	2	"DNASE2,MAST1"
TCGA.AA.A010.01A	19	12991559	13067640	37	0.3347	NEUTRAL	NA	8	"CALR,DNASE2,FARSA,GADD45GIP1,GCDH,KLF1,RAD23A,SYCE2"
TCGA.AG.A00C.01A	19	12995681	13007676	8	-0.2473	NEUTRAL	NA	2	"GCDH,KLF1"
TCGA.AG.A00C.01A	19	13008099	14294293	190	0.3112	NEUTRAL	NA	33	"ADGRL1,ASF1B,C19orf53,C19orf57,C19orf67,CACNA1A,CALR,CC2D1A,CCDC130,DAND5,DCAF15,FARSA,GADD45GIP1,GCDH,IER2,IL27RA,LOC113230,LYL1,MRI1,NACC1,NANOS3,NFIX,PALM3,PODNL1,PRKACA,RAD23A,RFX1,RLN3,SAMD1,STX10,SYCE2,TRMT1,ZSWIM4"
TCGA.AG.3906.01A	19	13049901	13059847	8	-0.0485	NEUTRAL	NA	2	"CALR,RAD23A"
TCGA.AG.4009.01A	19	13049901	13325019	39	-0.0439	NEUTRAL	NA	11	"CACNA1A,CALR,DAND5,GADD45GIP1,IER2,LYL1,NACC1,NFIX,RAD23A,STX10,TRMT1"
TCGA.AA.A01Q.01A	19	13058969	13263981	30	-0.3521	NEUTRAL	NA	9	"DAND5,GADD45GIP1,IER2,LYL1,NACC1,NFIX,RAD23A,STX10,TRMT1"
TCGA.AA.3842	19	13103637	24487681	2174	0.059	NEUTRAL	NA	208	Too-Many
TCGA.AG.3906.01A	19	13186302	13211427	4	-0.0698	NEUTRAL	NA	2	"LYL1,NFIX"
TCGA.AG.3909.01A	19	13218329	13226771	6	0.3234	NEUTRAL	NA	1	TRMT1
TCGA.AG.3906.01A	19	13255166	13862528	45	0.2531	NEUTRAL	NA	4	"CACNA1A,CCDC130,IER2,STX10"
TCGA.AA.A01Q.01A	19	13265154	13862528	14	0.0726	NEUTRAL	NA	3	"CACNA1A,CCDC130,IER2"
TCGA.AF.3914.01A	19	13340848	14047130	89	-0.2241	NEUTRAL	NA	9	"C19orf53,C19orf57,CACNA1A,CC2D1A,CCDC130,MRI1,NANOS3,PODNL1,ZSWIM4"
TCGA.AA.A010.01A	19	13345975	13409731	16	-0.0212	NEUTRAL	NA	1	CACNA1A
TCGA.AG.3909.01A	19	13355941	13411313	14	0.056	NEUTRAL	NA	1	CACNA1A
TCGA.AG.4009.01A	19	13409731	13418887	5	-0.2117	NEUTRAL	NA	1	CACNA1A
TCGA.AM.5820	19	13420916	13857239	116	-0.0715	NEUTRAL	NA	1	CACNA1A
TCGA.D5.6541	19	13613964	16112005	546	0.2901	NEUTRAL	NA	63	"ADGRE2,ADGRE3,ADGRE5,ADGRL1,AKAP8,AKAP8L,ASF1B,BRD4,C19orf53,C19orf57,C19orf67,CACNA1A,CASP14,CC2D1A,CCDC105,CCDC130,CLEC17A,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,DCAF15,DDX39A,DNAJB1,EPHX3,GIPC1,IL27RA,ILVBL,LOC102724279,LOC113230,MRI1,NANOS3,NDUFB7,NOTCH3,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,PALM3,PGLYRP2,PKN1,PODNL1,PRKACA,PTGER1,RASAL3,RFX1,RLN3,SAMD1,SLC1A6,SYDE1,TECR,WIZ,ZNF333,ZSWIM4"
TCGA.AG.3909.01A	19	13616699	13868571	6	-0.1906	NEUTRAL	NA	2	"CACNA1A,CCDC130"
TCGA.AA.A00N.01A	19	13616699	14593450	171	-0.4853	NEUTRAL	NA	25	"ADGRE5,ADGRL1,ASF1B,C19orf53,C19orf57,C19orf67,CACNA1A,CC2D1A,CCDC130,DCAF15,DDX39A,GIPC1,IL27RA,LOC113230,MRI1,NANOS3,PALM3,PKN1,PODNL1,PRKACA,PTGER1,RFX1,RLN3,SAMD1,ZSWIM4"
TCGA.CK.5914.01A	19	13616699	14676416	181	-0.1432	NEUTRAL	NA	27	"ADGRE5,ADGRL1,ASF1B,C19orf53,C19orf57,C19orf67,CACNA1A,CC2D1A,CCDC130,DCAF15,DDX39A,DNAJB1,GIPC1,IL27RA,LOC113230,MRI1,NANOS3,PALM3,PKN1,PODNL1,PRKACA,PTGER1,RFX1,RLN3,SAMD1,TECR,ZSWIM4"
TCGA.EI.6513	19	13686261	14147262	60	-0.0755	NEUTRAL	NA	12	"C19orf53,C19orf57,CC2D1A,CCDC130,DCAF15,IL27RA,MRI1,NANOS3,PODNL1,RFX1,RLN3,ZSWIM4"
TCGA.DC.4749	19	13686261	14626196	94	0.2441	NEUTRAL	NA	25	"ADGRE5,ADGRL1,ASF1B,C19orf53,C19orf57,C19orf67,CC2D1A,CCDC130,DCAF15,DDX39A,DNAJB1,GIPC1,IL27RA,LOC113230,MRI1,NANOS3,PALM3,PKN1,PODNL1,PRKACA,PTGER1,RFX1,RLN3,SAMD1,ZSWIM4"
TCGA.AG.4009.01A	19	13865053	13947061	25	-0.2607	NEUTRAL	NA	4	"C19orf53,CCDC130,MRI1,ZSWIM4"
TCGA.AM.5820	19	13866865	14707029	73	0.3026	NEUTRAL	NA	28	"ADGRE5,ADGRL1,ASF1B,C19orf53,C19orf57,C19orf67,CC2D1A,CCDC130,CLEC17A,DCAF15,DDX39A,DNAJB1,GIPC1,IL27RA,LOC113230,MRI1,NANOS3,NDUFB7,PALM3,PKN1,PODNL1,PRKACA,PTGER1,RFX1,RLN3,SAMD1,TECR,ZSWIM4"
TCGA.AA.A01Q.01A	19	13885269	13915606	4	0.2208	NEUTRAL	NA	2	"C19orf53,ZSWIM4"
TCGA.AG.3891.01A	19	13915606	13934123	7	0.3609	NEUTRAL	NA	1	ZSWIM4
TCGA.AG.3909.01A	19	13915606	14676416	142	-0.3093	NEUTRAL	NA	23	"ADGRE5,ADGRL1,ASF1B,C19orf57,C19orf67,CC2D1A,DCAF15,DDX39A,DNAJB1,GIPC1,IL27RA,LOC113230,NANOS3,PALM3,PKN1,PODNL1,PRKACA,PTGER1,RFX1,RLN3,SAMD1,TECR,ZSWIM4"
TCGA.AA.A010.01A	19	14015592	14063287	21	-0.1766	NEUTRAL	NA	3	"C19orf57,CC2D1A,PODNL1"
TCGA.AG.3891.01A	19	14030579	14104339	26	0.0989	NEUTRAL	NA	4	"CC2D1A,DCAF15,PODNL1,RFX1"
TCGA.AG.4009.01A	19	14047130	14104339	14	-0.4772	NEUTRAL	NA	3	"DCAF15,PODNL1,RFX1"
TCGA.AA.A01Q.01A	19	14070399	14199191	29	-0.2562	NEUTRAL	NA	7	"C19orf67,DCAF15,IL27RA,LOC113230,PALM3,RFX1,RLN3"
TCGA.AG.4009.01A	19	14138986	14150302	4	0.3634	NEUTRAL	NA	2	"IL27RA,RLN3"
TCGA.AA.A02E.01A	19	14156914	22001849	1047	-0.1665	NEUTRAL	NA	176	Too-Many
TCGA.AF.3914.01A	19	14217523	14231242	4	-0.4902	NEUTRAL	NA	2	"ASF1B,PRKACA"
TCGA.AF.3914.01A	19	14232293	14580101	53	0.0663	NEUTRAL	NA	5	"ADGRE5,ADGRL1,ASF1B,DDX39A,PKN1"
TCGA.AG.3891.01A	19	14247113	14268647	7	0.0995	NEUTRAL	NA	2	"ADGRL1,ASF1B"
TCGA.AA.A010.01A	19	14247113	14517164	31	-0.1941	NEUTRAL	NA	3	"ADGRE5,ADGRL1,ASF1B"
TCGA.AG.3906.01A	19	14247113	14523798	39	0.1583	NEUTRAL	NA	4	"ADGRE5,ADGRL1,ASF1B,DDX39A"
TCGA.AY.6196	19	14384934	34870706	4145	0.083	NEUTRAL	NA	215	Too-Many
TCGA.AA.A01Q.01A	19	14492246	14523798	20	-0.3978	NEUTRAL	NA	2	"ADGRE5,DDX39A"
TCGA.AG.3891.01A	19	14492246	14523798	21	0.1525	NEUTRAL	NA	2	"ADGRE5,DDX39A"
TCGA.AG.A00C.01A	19	14501688	14627261	36	0.373	NEUTRAL	NA	6	"ADGRE5,DDX39A,DNAJB1,GIPC1,PKN1,PTGER1"
TCGA.AG.4009.01A	19	14521754	14568791	10	0.0276	NEUTRAL	NA	2	"DDX39A,PKN1"
TCGA.NH.A8F7	19	14573653	15079103	146	-0.1247	NEUTRAL	NA	16	"ADGRE2,ADGRE3,CLEC17A,DNAJB1,GIPC1,NDUFB7,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,PKN1,PTGER1,SLC1A6,TECR,ZNF333"
TCGA.AA.A01Q.01A	19	14583345	14673265	13	-0.422	NEUTRAL	NA	4	"DNAJB1,GIPC1,PTGER1,TECR"
TCGA.AA.A00N.01A	19	14628904	14677535	10	-0.2512	NEUTRAL	NA	3	"DNAJB1,NDUFB7,TECR"
TCGA.AA.A010.01A	19	14628904	14765762	30	0.3219	NEUTRAL	NA	5	"ADGRE3,CLEC17A,DNAJB1,NDUFB7,TECR"
TCGA.AG.A00C.01A	19	14628904	15067249	70	-0.1279	NEUTRAL	NA	13	"ADGRE2,ADGRE3,CLEC17A,DNAJB1,NDUFB7,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,TECR,ZNF333"
TCGA.AG.3906.01A	19	14628904	15197840	87	-0.0032	NEUTRAL	NA	15	"ADGRE2,ADGRE3,CASP14,CCDC105,CLEC17A,DNAJB1,NDUFB7,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,TECR,ZNF333"
TCGA.AG.4009.01A	19	14640302	15072804	72	0.3774	NEUTRAL	NA	12	"ADGRE2,ADGRE3,CLEC17A,NDUFB7,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,TECR,ZNF333"
TCGA.AF.3914.01A	19	14640302	15197840	88	0.1872	NEUTRAL	NA	14	"ADGRE2,ADGRE3,CASP14,CCDC105,CLEC17A,NDUFB7,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,TECR,ZNF333"
TCGA.DC.4749	19	14659079	16287219	468	0.2914	NEUTRAL	NA	41	"ADGRE2,ADGRE3,AKAP8,AKAP8L,BRD4,CASP14,CCDC105,CIB3,CLEC17A,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,EPHX3,HSH2D,ILVBL,LOC102724279,NDUFB7,NOTCH3,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,PGLYRP2,RAB8A,RASAL3,SLC1A6,SYDE1,TECR,TPM4,WIZ,ZNF333"
TCGA.AG.3891.01A	19	14673265	15534997	164	0.289	NEUTRAL	NA	23	"ADGRE2,ADGRE3,AKAP8,AKAP8L,BRD4,CASP14,CCDC105,CLEC17A,EPHX3,ILVBL,NDUFB7,NOTCH3,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,SYDE1,TECR,WIZ,ZNF333"
TCGA.AA.A00O.01A	19	14674411	17873518	530	-0.2611	NEUTRAL	NA	81	"ABHD8,ADGRE2,ADGRE3,AKAP8,AKAP8L,ANKLE1,ANO8,AP1M1,BABAM1,BRD4,BST2,C19orf44,CALR3,CASP14,CCDC105,CHERP,CIB3,CLEC17A,COLGALT1,CPAMD8,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,DDA1,EPHX3,EPS15L1,F2RL3,FAM129C,FAM32A,FCHO1,GTPBP3,HAUS8,HSH2D,ILVBL,KLF2,LOC102724279,MAP1S,MED26,MRPL34,MVB12A,MYO9B,NDUFB7,NOTCH3,NR2F6,NWD1,NXNL1,OCEL1,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,PGLS,PGLYRP2,PLVAP,RAB8A,RASAL3,SIN3B,SLC1A6,SLC27A1,SLC35E1,SMIM7,SYDE1,TECR,TMEM221,TMEM38A,TPM4,UNC13A,USE1,USHBP1,WIZ,ZNF333"
TCGA.A6.3807	19	14684424	16694907	534	0.0962	NEUTRAL	NA	48	"ADGRE2,ADGRE3,AKAP8,AKAP8L,AP1M1,BRD4,C19orf44,CALR3,CASP14,CCDC105,CHERP,CIB3,CLEC17A,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,EPHX3,EPS15L1,FAM32A,HSH2D,ILVBL,KLF2,LOC102724279,MED26,NOTCH3,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,PGLYRP2,RAB8A,RASAL3,SLC1A6,SLC35E1,SYDE1,TPM4,WIZ,ZNF333"
TCGA.AM.5820	19	14709814	15206660	166	-0.2008	NEUTRAL	NA	13	"ADGRE2,ADGRE3,CASP14,CCDC105,CLEC17A,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,ZNF333"
TCGA.CK.5914.01A	19	14779543	14809966	6	0.0814	NEUTRAL	NA	2	"ADGRE3,ZNF333"
TCGA.AA.3952	19	14781417	16479659	488	0.0697	NEUTRAL	NA	42	"ADGRE2,ADGRE3,AKAP8,AKAP8L,AP1M1,BRD4,CASP14,CCDC105,CIB3,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,EPHX3,EPS15L1,FAM32A,HSH2D,ILVBL,KLF2,LOC102724279,NOTCH3,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,PGLYRP2,RAB8A,RASAL3,SLC1A6,SYDE1,TPM4,WIZ,ZNF333"
TCGA.AG.3909.01A	19	14804205	14809966	4	-0.2589	NEUTRAL	NA	1	ZNF333
TCGA.AA.A010.01A	19	14815815	14846954	9	-0.48	NEUTRAL	NA	2	"ADGRE2,ZNF333"
TCGA.AA.A010.01A	19	14854182	14865714	6	0.1984	NEUTRAL	NA	1	ADGRE2
TCGA.A6.3810.01A	19	14867010	14909934	9	-0.3716	NEUTRAL	NA	1	ADGRE2
TCGA.EI.6513	19	14934890	15794726	246	0.004	NEUTRAL	NA	22	"AKAP8,AKAP8L,BRD4,CASP14,CCDC105,CYP4F12,CYP4F22,CYP4F3,CYP4F8,EPHX3,ILVBL,NOTCH3,OR1I1,OR7A10,OR7A17,OR7A5,OR7C2,PGLYRP2,RASAL3,SLC1A6,SYDE1,WIZ"
TCGA.A6.3810.01A	19	14938045	15383609	89	0.0684	NEUTRAL	NA	13	"BRD4,CASP14,CCDC105,EPHX3,ILVBL,NOTCH3,OR1I1,OR7A10,OR7A17,OR7A5,OR7C2,SLC1A6,SYDE1"
TCGA.AA.A010.01A	19	14991211	15067249	7	0.1899	NEUTRAL	NA	3	"OR7A17,OR7C2,SLC1A6"
TCGA.CK.5914.01A	19	15052249	15132128	14	-0.0233	NEUTRAL	NA	3	"CCDC105,OR7C2,SLC1A6"
TCGA.AG.3909.01A	19	15063701	15132128	12	-0.2413	NEUTRAL	NA	2	"CCDC105,SLC1A6"
TCGA.AA.A00N.01A	19	15072804	15465709	80	-0.4164	NEUTRAL	NA	10	"AKAP8,BRD4,CASP14,CCDC105,EPHX3,ILVBL,NOTCH3,OR1I1,SLC1A6,SYDE1"
TCGA.AG.A00C.01A	19	15072804	15734723	130	0.2671	NEUTRAL	NA	16	"AKAP8,AKAP8L,BRD4,CASP14,CCDC105,CYP4F22,CYP4F8,EPHX3,ILVBL,NOTCH3,OR1I1,PGLYRP2,RASAL3,SLC1A6,SYDE1,WIZ"
TCGA.AG.4009.01A	19	15075052	15288288	40	-0.0741	NEUTRAL	NA	7	"CASP14,CCDC105,ILVBL,NOTCH3,OR1I1,SLC1A6,SYDE1"
TCGA.AA.A010.01A	19	15083467	15166764	12	0.0178	NEUTRAL	NA	3	"CASP14,CCDC105,SLC1A6"
TCGA.NH.A8F7	19	15084305	41987872	5286	0.2778	NEUTRAL	NA	400	Too-Many
TCGA.DY.A1DF	19	15109577	15928405	229	0.3129	NEUTRAL	NA	21	"AKAP8,AKAP8L,BRD4,CASP14,CCDC105,CYP4F12,CYP4F22,CYP4F3,CYP4F8,EPHX3,ILVBL,NOTCH3,OR10H1,OR10H2,OR10H3,OR10H5,OR1I1,PGLYRP2,RASAL3,SYDE1,WIZ"
TCGA.AM.5820	19	15209602	19887577	870	0.2196	NEUTRAL	NA	130	Too-Many
TCGA.CK.5914.01A	19	15218201	15465709	63	-0.0999	NEUTRAL	NA	6	"AKAP8,BRD4,EPHX3,ILVBL,NOTCH3,SYDE1"
TCGA.AA.A00Q.01A	19	15218201	15759920	100	0.3625	NEUTRAL	NA	13	"AKAP8,AKAP8L,BRD4,CYP4F22,CYP4F3,CYP4F8,EPHX3,ILVBL,NOTCH3,PGLYRP2,RASAL3,SYDE1,WIZ"
TCGA.AG.3909.01A	19	15219830	15235685	13	0.1726	NEUTRAL	NA	2	"ILVBL,SYDE1"
TCGA.AA.A00L.01A	19	15219830	15308264	40	0.0754	NEUTRAL	NA	3	"ILVBL,NOTCH3,SYDE1"
TCGA.AA.A01Q.01A	19	15219830	15355050	50	-0.2575	NEUTRAL	NA	5	"BRD4,EPHX3,ILVBL,NOTCH3,SYDE1"
TCGA.AF.3914.01A	19	15226015	15288288	18	0.2519	NEUTRAL	NA	2	"ILVBL,NOTCH3"
TCGA.AG.3906.01A	19	15233456	15529648	64	0.0945	NEUTRAL	NA	6	"AKAP8,AKAP8L,BRD4,EPHX3,ILVBL,NOTCH3"
TCGA.AF.3914.01A	19	15289587	15569112	70	-0.3856	NEUTRAL	NA	7	"AKAP8,AKAP8L,BRD4,EPHX3,NOTCH3,RASAL3,WIZ"
TCGA.F5.6810	19	15297575	17538477	496	-0.0631	NEUTRAL	NA	55	"ABHD8,AKAP8,AKAP8L,ANKLE1,ANO8,AP1M1,BABAM1,BRD4,BST2,C19orf44,CALR3,CHERP,CIB3,CPAMD8,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,DDA1,EPHX3,EPS15L1,F2RL3,FAM32A,GTPBP3,HAUS8,HSH2D,KLF2,LOC102724279,MED26,MRPL34,MVB12A,MYO9B,NOTCH3,NR2F6,NWD1,OCEL1,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,PGLYRP2,PLVAP,RAB8A,RASAL3,SIN3B,SLC35E1,SMIM7,TMEM38A,TPM4,USE1,USHBP1,WIZ"
TCGA.AA.A010.01A	19	15338201	15383609	21	0.1263	NEUTRAL	NA	2	"BRD4,EPHX3"
TCGA.AG.4009.01A	19	15342531	15383609	18	0.3697	NEUTRAL	NA	2	"BRD4,EPHX3"
TCGA.AA.3861.01A	19	15349547	15730231	76	-0.1417	NEUTRAL	NA	8	"AKAP8,AKAP8L,BRD4,CYP4F22,CYP4F8,PGLYRP2,RASAL3,WIZ"
TCGA.AF.2692	19	15384697	59095125	9102	0.0506	NEUTRAL	NA	939	Too-Many
TCGA.A6.3810.01A	19	15465709	15484645	11	-0.431	NEUTRAL	NA	1	AKAP8
TCGA.AA.A01Q.01A	19	15483652	15662078	23	-0.0314	NEUTRAL	NA	6	"AKAP8,AKAP8L,CYP4F22,PGLYRP2,RASAL3,WIZ"
TCGA.A6.3810.01A	19	15485344	15661430	49	-0.0302	NEUTRAL	NA	6	"AKAP8,AKAP8L,CYP4F22,PGLYRP2,RASAL3,WIZ"
TCGA.AG.4009.01A	19	15490946	15529648	10	-0.2261	NEUTRAL	NA	1	AKAP8L
TCGA.AA.3862.01A	19	15511549	21927691	1028	0.0646	NEUTRAL	NA	140	Too-Many
TCGA.AG.3909.01A	19	15529648	15651230	25	-0.1314	NEUTRAL	NA	5	"AKAP8L,CYP4F22,PGLYRP2,RASAL3,WIZ"
TCGA.CK.5914.01A	19	15529648	15662078	37	-0.028	NEUTRAL	NA	5	"AKAP8L,CYP4F22,PGLYRP2,RASAL3,WIZ"
TCGA.AA.A00N.01A	19	15529648	15734474	43	-0.4066	NEUTRAL	NA	6	"AKAP8L,CYP4F22,CYP4F8,PGLYRP2,RASAL3,WIZ"
TCGA.AF.3914.01A	19	15570940	17430306	340	0.1316	NEUTRAL	NA	44	"ABHD8,ANKLE1,AP1M1,BABAM1,C19orf44,CALR3,CHERP,CIB3,CPAMD8,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,DDA1,EPS15L1,F2RL3,FAM32A,HAUS8,HSH2D,KLF2,LOC102724279,MED26,MRPL34,MYO9B,NR2F6,NWD1,OCEL1,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,PGLYRP2,RAB8A,RASAL3,SIN3B,SLC35E1,SMIM7,TMEM38A,TPM4,USE1,USHBP1"
TCGA.AG.3906.01A	19	15579428	15654739	11	0.1953	NEUTRAL	NA	2	"CYP4F22,PGLYRP2"
TCGA.AG.3891.01A	19	15580391	15730231	17	0.2705	NEUTRAL	NA	3	"CYP4F22,CYP4F8,PGLYRP2"
TCGA.AG.4009.01A	19	15636106	16633826	141	0.3596	NEUTRAL	NA	23	"AP1M1,C19orf44,CALR3,CHERP,CIB3,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,EPS15L1,FAM32A,HSH2D,KLF2,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,RAB8A,TPM4"
TCGA.AA.3939.01A	19	15654739	16059821	59	-0.2093	NEUTRAL	NA	12	"CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5"
TCGA.AG.3906.01A	19	15658871	16198775	63	-0.3774	NEUTRAL	NA	13	"CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,TPM4"
TCGA.AA.3967.01A	19	15661430	16059821	56	-0.4519	NEUTRAL	NA	12	"CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5"
TCGA.A6.3810.01A	19	15662078	16024513	45	0.3111	NEUTRAL	NA	11	"CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H5"
TCGA.AG.3891.01A	19	15732978	16186810	53	-0.2406	NEUTRAL	NA	12	"CYP4F11,CYP4F12,CYP4F2,CYP4F3,CYP4F8,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,TPM4"
TCGA.AG.A00C.01A	19	15739116	15917874	26	-0.3904	NEUTRAL	NA	7	"CYP4F12,CYP4F3,CYP4F8,OR10H1,OR10H2,OR10H3,OR10H5"
TCGA.AG.3909.01A	19	15752194	15763346	6	-0.156	NEUTRAL	NA	1	CYP4F3
TCGA.EI.6513	19	15796812	15809749	13	-0.5136	NEUTRAL	NA	1	CYP4F12
TCGA.AG.3594	19	15957845	59095125	8939	0.0187	NEUTRAL	NA	925	Too-Many
TCGA.AG.A00C.01A	19	15989532	16548528	79	0.0788	NEUTRAL	NA	11	"AP1M1,CIB3,CYP4F11,CYP4F2,EPS15L1,FAM32A,HSH2D,KLF2,OR10H4,RAB8A,TPM4"
TCGA.AG.3611.01A	19	16008173	16037984	9	-0.2588	NEUTRAL	NA	2	"CYP4F11,CYP4F2"
TCGA.A6.3810.01A	19	16025067	59082320	6125	0.0135	NEUTRAL	NA	923	Too-Many
TCGA.AG.3909.01A	19	16037984	16198775	9	0.0265	NEUTRAL	NA	3	"CYP4F11,OR10H4,TPM4"
TCGA.AG.3611.01A	19	16040225	38994823	1470	0.1947	NEUTRAL	NA	286	Too-Many
TCGA.AA.A010.01A	19	16059821	16653081	97	0.1349	NEUTRAL	NA	12	"AP1M1,C19orf44,CALR3,CHERP,CIB3,EPS15L1,FAM32A,HSH2D,KLF2,OR10H4,RAB8A,TPM4"
TCGA.AA.3939.01A	19	16178398	18506943	563	0.2207	NEUTRAL	NA	65	"ABHD8,ANKLE1,ANO8,AP1M1,ARRDC2,B3GNT3,BABAM1,BST2,C19orf44,CALR3,CCDC124,CHERP,CIB3,COLGALT1,CPAMD8,DDA1,EPS15L1,F2RL3,FAM129C,FAM32A,FCHO1,GDF15,GTPBP3,HAUS8,HSH2D,IFI30,IL12RB1,INSL3,JAK3,JUND,KCNN1,KIAA1683,KLF2,LRRC25,LSM4,MAP1S,MAST3,MED26,MPV17L2,MRPL34,MVB12A,MYO9B,NR2F6,NWD1,NXNL1,OCEL1,PDE4C,PGLS,PGPEP1,PIK3R2,PLVAP,RAB3A,RAB8A,RPL18A,SIN3B,SLC27A1,SLC35E1,SLC5A5,SMIM7,TMEM221,TMEM38A,TPM4,UNC13A,USE1,USHBP1"
TCGA.AA.3967.01A	19	16178398	30505773	1020	0.0138	NEUTRAL	NA	146	Too-Many
TCGA.AA.A01Q.01A	19	16192692	16757963	87	-0.4042	NEUTRAL	NA	14	"AP1M1,C19orf44,CALR3,CHERP,CIB3,EPS15L1,FAM32A,HSH2D,KLF2,MED26,RAB8A,SLC35E1,SMIM7,TPM4"
TCGA.AG.3891.01A	19	16192692	16963834	122	0.3712	NEUTRAL	NA	17	"AP1M1,C19orf44,CALR3,CHERP,CIB3,EPS15L1,FAM32A,HSH2D,KLF2,MED26,NWD1,RAB8A,SIN3B,SLC35E1,SMIM7,TMEM38A,TPM4"
TCGA.CK.5914.01A	19	16199805	16242968	11	-0.4538	NEUTRAL	NA	2	"RAB8A,TPM4"
TCGA.AG.3906.01A	19	16199805	16664443	79	0.1504	NEUTRAL	NA	12	"AP1M1,C19orf44,CALR3,CHERP,CIB3,EPS15L1,FAM32A,HSH2D,KLF2,RAB8A,SLC35E1,TPM4"
TCGA.D5.6541	19	16205675	17111410	168	0.2777	NEUTRAL	NA	19	"AP1M1,C19orf44,CALR3,CHERP,CIB3,CPAMD8,EPS15L1,F2RL3,FAM32A,HSH2D,KLF2,MED26,NWD1,RAB8A,SIN3B,SLC35E1,SMIM7,TMEM38A,TPM4"
TCGA.AA.3861.01A	19	16222665	33467310	1130	0.237	NEUTRAL	NA	158	Too-Many
TCGA.AA.A00N.01A	19	16283889	16552651	41	-0.0519	NEUTRAL	NA	5	"AP1M1,CIB3,EPS15L1,FAM32A,KLF2"
TCGA.F4.6704	19	16287219	24455962	1485	0.1508	NEUTRAL	NA	135	Too-Many
TCGA.AG.3909.01A	19	16301276	16757963	69	-0.203	NEUTRAL	NA	10	"AP1M1,C19orf44,CALR3,CHERP,EPS15L1,FAM32A,KLF2,MED26,SLC35E1,SMIM7"
TCGA.CK.5914.01A	19	16319794	16770734	77	-0.2244	NEUTRAL	NA	9	"AP1M1,C19orf44,CALR3,CHERP,EPS15L1,KLF2,MED26,SLC35E1,SMIM7"
TCGA.AG.A01W.01A	19	16507227	16834655	44	-0.2665	NEUTRAL	NA	9	"C19orf44,CALR3,CHERP,EPS15L1,MED26,NWD1,SLC35E1,SMIM7,TMEM38A"
TCGA.A6.3807	19	16696545	24071153	1345	-0.2012	NEUTRAL	NA	125	Too-Many
TCGA.AG.3906.01A	19	16770141	16925802	22	0.1968	NEUTRAL	NA	3	"NWD1,SMIM7,TMEM38A"
TCGA.AG.4009.01A	19	16770141	16986874	37	0.2276	NEUTRAL	NA	4	"NWD1,SIN3B,SMIM7,TMEM38A"
TCGA.AA.A00D.01A	19	16790744	16890105	13	-0.1181	NEUTRAL	NA	2	"NWD1,TMEM38A"
TCGA.AG.A00C.01A	19	16790744	17113018	64	-0.1246	NEUTRAL	NA	5	"CPAMD8,F2RL3,NWD1,SIN3B,TMEM38A"
TCGA.AG.A01W.01A	19	16872968	17144522	54	-0.3394	NEUTRAL	NA	4	"CPAMD8,F2RL3,NWD1,SIN3B"
TCGA.AG.3909.01A	19	16890105	16918348	7	0.3011	NEUTRAL	NA	1	NWD1
TCGA.AA.A01Q.01A	19	16899743	16918348	6	0.2452	NEUTRAL	NA	1	NWD1
TCGA.AA.A010.01A	19	16899743	17025426	39	0.0424	NEUTRAL	NA	4	"CPAMD8,F2RL3,NWD1,SIN3B"
TCGA.AG.3909.01A	19	16923509	17010227	24	-0.2785	NEUTRAL	NA	4	"CPAMD8,F2RL3,NWD1,SIN3B"
TCGA.AA.A00N.01A	19	16923509	17017710	31	-0.3998	NEUTRAL	NA	4	"CPAMD8,F2RL3,NWD1,SIN3B"
TCGA.CK.5914.01A	19	16923509	17035975	35	-0.0459	NEUTRAL	NA	4	"CPAMD8,F2RL3,NWD1,SIN3B"
TCGA.AA.A01Q.01A	19	16923509	17337465	46	-0.2592	NEUTRAL	NA	8	"CPAMD8,F2RL3,HAUS8,MYO9B,NWD1,OCEL1,SIN3B,USE1"
TCGA.AG.3906.01A	19	16940585	17104184	40	-0.1244	NEUTRAL	NA	3	"CPAMD8,F2RL3,SIN3B"
TCGA.AG.3891.01A	19	16964907	16986874	9	0.0583	NEUTRAL	NA	1	SIN3B
TCGA.AG.3891.01A	19	16987282	17003889	4	-0.3791	NEUTRAL	NA	3	"CPAMD8,F2RL3,SIN3B"
TCGA.AG.4009.01A	19	16987282	17014301	10	-0.1958	NEUTRAL	NA	3	"CPAMD8,F2RL3,SIN3B"
TCGA.AG.3891.01A	19	17006970	17088148	19	0.1587	NEUTRAL	NA	1	CPAMD8
TCGA.F4.6459	19	17059208	23261224	1081	0.0462	NEUTRAL	NA	115	Too-Many
TCGA.AG.3906.01A	19	17107870	17343134	55	0.2803	NEUTRAL	NA	6	"CPAMD8,HAUS8,MYO9B,NR2F6,OCEL1,USE1"
TCGA.AA.A010.01A	19	17111172	17122254	6	-0.2928	NEUTRAL	NA	1	CPAMD8
TCGA.AA.A00N.01A	19	17115046	17273760	25	-0.3804	NEUTRAL	NA	3	"CPAMD8,HAUS8,MYO9B"
TCGA.CK.5914.01A	19	17115046	17278701	26	0.2726	NEUTRAL	NA	3	"CPAMD8,HAUS8,MYO9B"
TCGA.AG.A00C.01A	19	17115046	21950131	672	0.1732	NEUTRAL	NA	106	Too-Many
TCGA.AG.4009.01A	19	17119242	17186118	15	-0.0512	NEUTRAL	NA	2	"CPAMD8,HAUS8"
TCGA.AG.A01W.01A	19	17162865	17174909	10	-0.1207	NEUTRAL	NA	1	HAUS8
TCGA.AG.A01W.01A	19	17187169	17291307	47	-0.2321	NEUTRAL	NA	1	MYO9B
TCGA.AA.A010.01A	19	17212516	17305324	21	0.3512	NEUTRAL	NA	1	MYO9B
TCGA.AA.3509.01A	19	17265074	21117733	749	-0.0731	NEUTRAL	NA	97	"ABHD8,ANKLE1,ANO8,ARMC6,ARRDC2,ATP13A1,B3GNT3,BABAM1,BST2,C19orf60,CCDC124,CERS1,CILP2,COLGALT1,COMP,COPE,CRLF1,CRTC1,DDA1,DDX49,ELL,FAM129C,FCHO1,FKBP8,GATAD2A,GDF1,GDF15,GMIP,GTPBP3,HAPLN4,HOMER3,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAP1S,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,MRPL34,MVB12A,MYO9B,NCAN,NDUFA13,NR2C2AP,NR2F6,NXNL1,OCEL1,PBX4,PDE4C,PGLS,PGPEP1,PIK3R2,PLVAP,RAB3A,RFXANK,RPL18A,SLC25A42,SLC27A1,SLC5A5,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM221,TMEM59L,TSSK6,UBA52,UNC13A,UPF1,USE1,USHBP1,YJEFN3,ZNF101,ZNF14,ZNF253,ZNF486,ZNF506,ZNF626,ZNF682,ZNF737,ZNF85,ZNF90,ZNF93"
TCGA.AG.3909.01A	19	17278701	19843670	575	-0.2057	NEUTRAL	NA	88	"ABHD8,ANKLE1,ANO8,ARMC6,ARRDC2,ATP13A1,B3GNT3,BABAM1,BST2,C19orf60,CCDC124,CERS1,CILP2,COLGALT1,COMP,COPE,CRLF1,CRTC1,DDA1,DDX49,ELL,FAM129C,FCHO1,FKBP8,GATAD2A,GDF1,GDF15,GMIP,GTPBP3,HAPLN4,HOMER3,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAP1S,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,MRPL34,MVB12A,MYO9B,NCAN,NDUFA13,NR2C2AP,NR2F6,NXNL1,OCEL1,PBX4,PDE4C,PGLS,PGPEP1,PIK3R2,PLVAP,RAB3A,RFXANK,RPL18A,SLC25A42,SLC27A1,SLC5A5,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM221,TMEM59L,TSSK6,UBA52,UNC13A,UPF1,USE1,USHBP1,YJEFN3,ZNF101,ZNF14"
TCGA.CK.5914.01A	19	17283118	18172948	276	-0.1244	NEUTRAL	NA	33	"ABHD8,ANKLE1,ANO8,ARRDC2,B3GNT3,BABAM1,BST2,CCDC124,COLGALT1,DDA1,FAM129C,FCHO1,GTPBP3,IL12RB1,INSL3,JAK3,KCNN1,MAP1S,MRPL34,MVB12A,MYO9B,NR2F6,NXNL1,OCEL1,PGLS,PLVAP,RPL18A,SLC27A1,SLC5A5,TMEM221,UNC13A,USE1,USHBP1"
TCGA.AG.4009.01A	19	17301856	17311408	6	0.1177	NEUTRAL	NA	1	MYO9B
TCGA.AA.A010.01A	19	17308538	17317895	11	-0.4746	NEUTRAL	NA	1	MYO9B
TCGA.AA.A00N.01A	19	17343134	18170330	237	-0.4692	NEUTRAL	NA	30	"ABHD8,ANKLE1,ANO8,ARRDC2,B3GNT3,BABAM1,BST2,CCDC124,COLGALT1,DDA1,FAM129C,FCHO1,GTPBP3,IL12RB1,INSL3,JAK3,KCNN1,MAP1S,MRPL34,MVB12A,NR2F6,NXNL1,PGLS,PLVAP,RPL18A,SLC27A1,SLC5A5,TMEM221,UNC13A,USHBP1"
TCGA.AG.4009.01A	19	17362370	17396198	15	0.0957	NEUTRAL	NA	3	"ANKLE1,BABAM1,USHBP1"
TCGA.AA.A029.01A	19	17366152	54223332	3843	0.0311	NEUTRAL	NA	725	Too-Many
TCGA.AG.3891.01A	19	17387257	17471321	31	0.2105	NEUTRAL	NA	8	"ABHD8,ANKLE1,ANO8,BABAM1,DDA1,GTPBP3,MRPL34,PLVAP"
TCGA.AA.A010.01A	19	17445325	17516048	14	-0.5083	NEUTRAL	NA	4	"ANO8,BST2,GTPBP3,PLVAP"
TCGA.AA.A01Q.01A	19	17445325	17657464	46	-0.2066	NEUTRAL	NA	10	"ANO8,BST2,FAM129C,GTPBP3,MVB12A,NXNL1,PGLS,PLVAP,SLC27A1,TMEM221"
TCGA.AA.A02K.01A	19	17448368	33498914	932	-0.0574	NEUTRAL	NA	129	Too-Many
TCGA.AG.4009.01A	19	17448785	17516048	12	0.2688	NEUTRAL	NA	3	"BST2,GTPBP3,PLVAP"
TCGA.AF.3914.01A	19	17448785	17651150	38	0.3108	NEUTRAL	NA	9	"BST2,FAM129C,GTPBP3,MVB12A,NXNL1,PGLS,PLVAP,SLC27A1,TMEM221"
TCGA.AG.A01W.01A	19	17512151	17621050	46	-0.2353	NEUTRAL	NA	5	"BST2,MVB12A,NXNL1,SLC27A1,TMEM221"
TCGA.AA.A010.01A	19	17530893	17651150	30	0.1553	NEUTRAL	NA	6	"FAM129C,MVB12A,NXNL1,PGLS,SLC27A1,TMEM221"
TCGA.AA.3952	19	17538477	20985424	514	0.0405	NEUTRAL	NA	81	"ARMC6,ARRDC2,ATP13A1,B3GNT3,C19orf60,CCDC124,CERS1,CILP2,COLGALT1,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FAM129C,FCHO1,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAP1S,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,NCAN,NDUFA13,NR2C2AP,NXNL1,PBX4,PDE4C,PGLS,PGPEP1,PIK3R2,RAB3A,RFXANK,RPL18A,SLC25A42,SLC27A1,SLC5A5,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM221,TMEM59L,TSSK6,UBA52,UNC13A,UPF1,YJEFN3,ZNF101,ZNF14,ZNF253,ZNF486,ZNF506,ZNF626,ZNF682,ZNF737,ZNF90,ZNF93"
TCGA.AG.3906.01A	19	17597393	17722520	33	0.0709	NEUTRAL	NA	5	"COLGALT1,FAM129C,PGLS,SLC27A1,UNC13A"
TCGA.AG.4009.01A	19	17648133	17654078	5	0.0675	NEUTRAL	NA	1	FAM129C
TCGA.AF.3914.01A	19	17652897	17683245	11	-0.4552	NEUTRAL	NA	2	"COLGALT1,FAM129C"
TCGA.AA.A01Q.01A	19	17678188	17691938	8	-0.2378	NEUTRAL	NA	1	COLGALT1
TCGA.AG.4009.01A	19	17679271	17785424	37	0.2332	NEUTRAL	NA	2	"COLGALT1,UNC13A"
TCGA.EF.5830	19	17686780	19889147	327	0.0734	NEUTRAL	NA	68	"ARMC6,ARRDC2,ATP13A1,B3GNT3,C19orf60,CCDC124,CERS1,CILP2,COLGALT1,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FCHO1,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAP1S,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,NCAN,NDUFA13,NR2C2AP,PBX4,PDE4C,PGPEP1,PIK3R2,RAB3A,RFXANK,RPL18A,SLC25A42,SLC5A5,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,TSSK6,UBA52,UNC13A,UPF1,YJEFN3,ZNF101,ZNF14"
TCGA.AA.A010.01A	19	17687945	17799220	47	0.1443	NEUTRAL	NA	2	"COLGALT1,UNC13A"
TCGA.AF.3914.01A	19	17687945	17799220	43	0.2906	NEUTRAL	NA	2	"COLGALT1,UNC13A"
TCGA.AG.A01W.01A	19	17692707	17704964	7	0.3711	NEUTRAL	NA	1	COLGALT1
TCGA.F5.6812	19	17696688	23387787	991	-0.0558	NEUTRAL	NA	93	"ARMC6,ARRDC2,ATP13A1,B3GNT3,C19orf60,CCDC124,CERS1,CILP2,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FCHO1,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAP1S,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,NCAN,NDUFA13,NR2C2AP,PBX4,PDE4C,PGPEP1,PIK3R2,RAB3A,RFXANK,RPL18A,SLC25A42,SLC5A5,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,TSSK6,UBA52,UNC13A,UPF1,YJEFN3,ZNF100,ZNF101,ZNF14,ZNF208,ZNF253,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF626,ZNF676,ZNF682,ZNF708,ZNF714,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF93,ZNF98,ZNF99"
TCGA.AG.A01W.01A	19	17706056	17965242	68	-0.3726	NEUTRAL	NA	6	"B3GNT3,FCHO1,INSL3,JAK3,MAP1S,UNC13A"
TCGA.EI.6881	19	17712373	59095125	8562	-0.0601	NEUTRAL	NA	880	Too-Many
TCGA.AG.3906.01A	19	17728481	17740927	11	-0.4606	NEUTRAL	NA	1	UNC13A
TCGA.AG.3891.01A	19	17729194	17766662	26	-0.03	NEUTRAL	NA	1	UNC13A
TCGA.AG.3906.01A	19	17741410	17799220	25	0.1747	NEUTRAL	NA	1	UNC13A
TCGA.AA.A01Q.01A	19	17831698	17999113	63	-0.2831	NEUTRAL	NA	7	"B3GNT3,FCHO1,INSL3,JAK3,MAP1S,RPL18A,SLC5A5"
TCGA.AG.3906.01A	19	17845040	18235404	87	0.1434	NEUTRAL	NA	12	"ARRDC2,B3GNT3,CCDC124,FCHO1,IL12RB1,INSL3,JAK3,KCNN1,MAP1S,MAST3,RPL18A,SLC5A5"
TCGA.AG.4009.01A	19	17873518	17885778	8	0.197	NEUTRAL	NA	1	FCHO1
TCGA.AA.A00Q.01A	19	17892008	17927631	10	-0.1682	NEUTRAL	NA	3	"B3GNT3,FCHO1,INSL3"
TCGA.AA.A00O.01A	19	17897321	19788721	303	-0.4794	NEUTRAL	NA	64	"ARMC6,ARRDC2,ATP13A1,B3GNT3,C19orf60,CCDC124,CERS1,CILP2,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FCHO1,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,NCAN,NDUFA13,NR2C2AP,PBX4,PDE4C,PGPEP1,PIK3R2,RAB3A,RFXANK,RPL18A,SLC25A42,SLC5A5,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,TSSK6,UBA52,UPF1,YJEFN3,ZNF101"
TCGA.A6.3808.01A	19	17970678	18256501	73	0.1213	NEUTRAL	NA	7	"ARRDC2,CCDC124,IL12RB1,KCNN1,MAST3,RPL18A,SLC5A5"
TCGA.AF.3914.01A	19	17984889	18555958	124	-0.1186	NEUTRAL	NA	20	"ARRDC2,CCDC124,ELL,GDF15,IFI30,IL12RB1,ISYNA1,JUND,KCNN1,KIAA1683,LRRC25,LSM4,MAST3,MPV17L2,PDE4C,PGPEP1,PIK3R2,RAB3A,SLC5A5,SSBP4"
TCGA.AA.A01Q.01A	19	18001643	18096090	9	0.3158	NEUTRAL	NA	3	"CCDC124,KCNN1,SLC5A5"
TCGA.AG.A01W.01A	19	18035637	18825030	168	-0.1162	NEUTRAL	NA	27	"ARRDC2,C19orf60,CCDC124,CRLF1,CRTC1,ELL,FKBP8,GDF15,IFI30,IL12RB1,ISYNA1,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LRRC25,LSM4,MAST3,MPV17L2,PDE4C,PGPEP1,PIK3R2,RAB3A,SSBP4,TMEM59L,UBA52"
TCGA.AG.4009.01A	19	18047183	18084667	2	0.1126	NEUTRAL	NA	2	"CCDC124,KCNN1"
TCGA.AA.A01Q.01A	19	18099183	18188299	19	-0.2256	NEUTRAL	NA	3	"ARRDC2,IL12RB1,KCNN1"
TCGA.AG.A014.01A	19	18120958	54725560	3990	0.3299	NEUTRAL	NA	717	Too-Many
TCGA.AG.4009.01A	19	18187035	18194183	5	-0.1456	NEUTRAL	NA	1	IL12RB1
TCGA.AA.A010.01A	19	18188299	18234742	11	-0.3237	NEUTRAL	NA	2	"IL12RB1,MAST3"
TCGA.AA.A01Q.01A	19	18191600	18266661	13	0.3222	NEUTRAL	NA	3	"IL12RB1,MAST3,PIK3R2"
TCGA.AG.4009.01A	19	18218314	18285803	28	-0.4738	NEUTRAL	NA	3	"IFI30,MAST3,PIK3R2"
TCGA.AA.A00N.01A	19	18218314	19267892	255	-0.5	NEUTRAL	NA	36	"ARMC6,C19orf60,CERS1,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FKBP8,GDF1,GDF15,HOMER3,IFI30,ISYNA1,JUND,KIAA1683,KLHL26,KXD1,LRRC25,LSM4,MAST3,MEF2B,MEF2BNB-MEF2B,MPV17L2,PDE4C,PGPEP1,PIK3R2,RAB3A,SLC25A42,SSBP4,SUGP2,TMEM161A,TMEM59L,UBA52,UPF1"
TCGA.CK.5914.01A	19	18218314	19773870	394	-0.151	NEUTRAL	NA	53	"ARMC6,ATP13A1,C19orf60,CERS1,CILP2,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,IFI30,ISYNA1,JUND,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,NCAN,NDUFA13,NR2C2AP,PBX4,PDE4C,PGPEP1,PIK3R2,RAB3A,RFXANK,SLC25A42,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,TSSK6,UBA52,UPF1,YJEFN3"
TCGA.A6.3808.01A	19	18257664	35451088	875	-0.36	NEUTRAL	NA	128	Too-Many
TCGA.AG.4009.01A	19	18288446	18506943	33	0.2528	NEUTRAL	NA	10	"GDF15,IFI30,JUND,KIAA1683,LRRC25,LSM4,MPV17L2,PDE4C,PGPEP1,RAB3A"
TCGA.AA.A010.01A	19	18304051	18367972	22	-0.0763	NEUTRAL	NA	4	"KIAA1683,MPV17L2,PDE4C,RAB3A"
TCGA.AG.3906.01A	19	18304623	18643446	46	0.2661	NEUTRAL	NA	13	"ELL,FKBP8,GDF15,ISYNA1,JUND,KIAA1683,LRRC25,LSM4,MPV17L2,PDE4C,PGPEP1,RAB3A,SSBP4"
TCGA.AA.3712	19	18305577	24505636	1144	-0.1136	NEUTRAL	NA	83	"ARMC6,ATP13A1,C19orf60,CERS1,CILP2,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,ISYNA1,JUND,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,NCAN,NDUFA13,NR2C2AP,PBX4,PDE4C,PGPEP1,RAB3A,RFXANK,SLC25A42,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,TSSK6,UBA52,UPF1,YJEFN3,ZNF100,ZNF101,ZNF14,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AA.A01Q.01A	19	18331910	18794486	73	-0.1941	NEUTRAL	NA	18	"C19orf60,CRLF1,CRTC1,ELL,FKBP8,GDF15,ISYNA1,JUND,KIAA1683,KLHL26,KXD1,LRRC25,LSM4,PDE4C,PGPEP1,SSBP4,TMEM59L,UBA52"
TCGA.DC.6158	19	18375658	21158133	417	0.0083	NEUTRAL	NA	58	"ARMC6,ATP13A1,C19orf60,CERS1,CILP2,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,ISYNA1,JUND,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,NCAN,NDUFA13,NR2C2AP,PBX4,PGPEP1,RFXANK,SLC25A42,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,TSSK6,UBA52,UPF1,YJEFN3,ZNF101,ZNF14,ZNF253,ZNF486,ZNF506,ZNF626,ZNF682,ZNF737,ZNF85,ZNF90,ZNF93"
TCGA.AA.A010.01A	19	18418251	18499059	12	-0.1355	NEUTRAL	NA	3	"GDF15,LSM4,PGPEP1"
TCGA.AA.3939.01A	19	18538101	18576566	21	-0.4797	NEUTRAL	NA	3	"ELL,ISYNA1,SSBP4"
TCGA.AG.3891.01A	19	18541594	18576566	16	-0.1659	NEUTRAL	NA	3	"ELL,ISYNA1,SSBP4"
TCGA.AG.4009.01A	19	18555535	18870771	43	0.097	NEUTRAL	NA	9	"C19orf60,CRLF1,CRTC1,ELL,FKBP8,KLHL26,KXD1,TMEM59L,UBA52"
TCGA.AA.A010.01A	19	18561245	18632681	8	0.0023	NEUTRAL	NA	1	ELL
TCGA.AA.3939.01A	19	18583567	59082320	5373	0.3585	NEUTRAL	NA	854	Too-Many
TCGA.AG.3906.01A	19	18672818	18707404	9	0.1602	NEUTRAL	NA	4	"C19orf60,CRLF1,KXD1,UBA52"
TCGA.AF.3914.01A	19	18704281	19636941	198	-0.2902	NEUTRAL	NA	28	"ARMC6,CERS1,COMP,COPE,CRLF1,CRTC1,DDX49,GATAD2A,GDF1,HAPLN4,HOMER3,KLHL26,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,NCAN,NDUFA13,NR2C2AP,RFXANK,SLC25A42,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,TSSK6,UPF1"
TCGA.AG.3906.01A	19	18728917	18901339	24	0.2351	NEUTRAL	NA	4	"COMP,CRTC1,KLHL26,TMEM59L"
TCGA.AG.A01W.01A	19	18840358	19158665	76	-0.2613	NEUTRAL	NA	10	"ARMC6,CERS1,COMP,COPE,CRTC1,DDX49,GDF1,HOMER3,SUGP2,UPF1"
TCGA.AA.A010.01A	19	18853702	18901948	27	-0.1212	NEUTRAL	NA	2	"COMP,CRTC1"
TCGA.AG.4009.01A	19	18876165	18990038	32	-0.4979	NEUTRAL	NA	5	"CERS1,COMP,CRTC1,GDF1,UPF1"
TCGA.AA.A01Q.01A	19	18980755	19772806	176	-0.3374	NEUTRAL	NA	28	"ARMC6,ATP13A1,CERS1,CILP2,COPE,DDX49,GATAD2A,GDF1,GMIP,HAPLN4,HOMER3,LPAR2,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,NCAN,NDUFA13,NR2C2AP,PBX4,RFXANK,SLC25A42,SUGP1,SUGP2,TM6SF2,TMEM161A,TSSK6,YJEFN3"
TCGA.AG.4009.01A	19	18994849	19120703	25	0.2733	NEUTRAL	NA	6	"CERS1,COPE,DDX49,GDF1,HOMER3,SUGP2"
TCGA.AG.4009.01A	19	19129871	19206884	11	-0.394	NEUTRAL	NA	3	"ARMC6,SLC25A42,SUGP2"
TCGA.AG.A01W.01A	19	19188718	19230303	13	-0.305	NEUTRAL	NA	1	SLC25A42
TCGA.DY.A1DF	19	19206499	19898148	113	0.3392	NEUTRAL	NA	23	"ATP13A1,CILP2,GATAD2A,GMIP,HAPLN4,LPAR2,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,NCAN,NDUFA13,NR2C2AP,PBX4,RFXANK,SLC25A42,SUGP1,TM6SF2,TMEM161A,TSSK6,YJEFN3,ZNF101,ZNF14"
TCGA.AA.A010.01A	19	19206884	19218656	6	0.0197	NEUTRAL	NA	1	SLC25A42
TCGA.AG.A01W.01A	19	19232623	19277622	21	0.3082	NEUTRAL	NA	3	"MEF2B,MEF2BNB-MEF2B,TMEM161A"
TCGA.D5.6541	19	19245510	20352205	185	0.0373	NEUTRAL	NA	28	"ATP13A1,CILP2,GATAD2A,GMIP,HAPLN4,LPAR2,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,NCAN,NDUFA13,NR2C2AP,PBX4,RFXANK,SUGP1,TM6SF2,TMEM161A,TSSK6,YJEFN3,ZNF101,ZNF14,ZNF253,ZNF486,ZNF506,ZNF682,ZNF90,ZNF93"
TCGA.AG.A01W.01A	19	19281870	21810579	203	-0.0664	NEUTRAL	NA	35	"ATP13A1,CILP2,GATAD2A,GMIP,HAPLN4,LPAR2,MAU2,MEF2BNB,MEF2BNB-MEF2B,NCAN,NDUFA13,NR2C2AP,PBX4,RFXANK,SUGP1,TM6SF2,TSSK6,YJEFN3,ZNF101,ZNF14,ZNF253,ZNF429,ZNF430,ZNF431,ZNF486,ZNF493,ZNF506,ZNF626,ZNF682,ZNF708,ZNF714,ZNF737,ZNF85,ZNF90,ZNF93"
TCGA.AA.A010.01A	19	19312417	19339043	10	-0.1465	NEUTRAL	NA	3	"NCAN,NR2C2AP,RFXANK"
TCGA.AG.4009.01A	19	19313554	19387373	25	-0.472	NEUTRAL	NA	5	"HAPLN4,NCAN,NR2C2AP,SUGP1,TM6SF2"
TCGA.DY.A1DG	19	19341445	20666772	204	-0.04	NEUTRAL	NA	22	"ATP13A1,CILP2,GATAD2A,GMIP,HAPLN4,LPAR2,MAU2,NCAN,NDUFA13,PBX4,SUGP1,TM6SF2,TSSK6,YJEFN3,ZNF101,ZNF14,ZNF253,ZNF486,ZNF506,ZNF682,ZNF90,ZNF93"
TCGA.AA.A010.01A	19	19383881	19729268	71	-0.0119	NEUTRAL	NA	9	"CILP2,GATAD2A,MAU2,NDUFA13,PBX4,SUGP1,TM6SF2,TSSK6,YJEFN3"
TCGA.AG.3906.01A	19	19387373	19645824	48	-0.0355	NEUTRAL	NA	6	"GATAD2A,MAU2,NDUFA13,SUGP1,TSSK6,YJEFN3"
TCGA.AG.3891.01A	19	19447935	19640136	31	0.0844	NEUTRAL	NA	5	"GATAD2A,MAU2,NDUFA13,TSSK6,YJEFN3"
TCGA.AA.A00N.01A	19	19449611	19546903	15	0.1715	NEUTRAL	NA	2	"GATAD2A,MAU2"
TCGA.AY.A54L.01A	19	19545833	19932321	85	-0.3391	NEUTRAL	NA	12	"ATP13A1,CILP2,GATAD2A,GMIP,LPAR2,NDUFA13,PBX4,TSSK6,YJEFN3,ZNF101,ZNF14,ZNF506"
TCGA.AA.A00N.01A	19	19576102	19654449	30	-0.4177	NEUTRAL	NA	5	"CILP2,GATAD2A,NDUFA13,TSSK6,YJEFN3"
TCGA.AG.4009.01A	19	19625736	19654449	12	-0.2717	NEUTRAL	NA	4	"CILP2,NDUFA13,TSSK6,YJEFN3"
TCGA.AG.3891.01A	19	19645824	19825131	48	0.3771	NEUTRAL	NA	8	"ATP13A1,CILP2,GMIP,LPAR2,PBX4,YJEFN3,ZNF101,ZNF14"
TCGA.AG.3906.01A	19	19650447	19681367	10	0.3342	NEUTRAL	NA	2	"CILP2,PBX4"
TCGA.AA.A00N.01A	19	19672791	19681367	6	0.2294	NEUTRAL	NA	1	PBX4
TCGA.AG.4009.01A	19	19672791	19710075	6	0.3351	NEUTRAL	NA	1	PBX4
TCGA.AG.3906.01A	19	19756962	19825131	18	0.1969	NEUTRAL	NA	3	"ATP13A1,ZNF101,ZNF14"
TCGA.AA.A004.01A	19	19770363	49954697	2734	-0.2533	NEUTRAL	NA	510	Too-Many
TCGA.AF.3914.01A	19	19772806	21720535	109	-0.2752	NEUTRAL	NA	18	"ATP13A1,ZNF101,ZNF14,ZNF253,ZNF429,ZNF430,ZNF431,ZNF486,ZNF493,ZNF506,ZNF626,ZNF682,ZNF708,ZNF714,ZNF737,ZNF85,ZNF90,ZNF93"
TCGA.AA.A01Q.01A	19	19779676	24310438	122	0.2678	NEUTRAL	NA	33	"ZNF100,ZNF101,ZNF14,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AG.4009.01A	19	19788721	19789953	3	-0.0139	NEUTRAL	NA	1	ZNF101
TCGA.AA.A00O.01A	19	19789477	59082320	4217	0.1039	NEUTRAL	NA	815	Too-Many
TCGA.AG.4009.01A	19	19822113	20135012	30	0.2902	NEUTRAL	NA	5	"ZNF14,ZNF253,ZNF506,ZNF682,ZNF93"
TCGA.DM.A28M.01A	19	19822113	30018096	191	0.2552	NEUTRAL	NA	34	"UQCRFS1,VSTM2B,ZNF100,ZNF14,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AA.A00N.01A	19	19843670	20216044	28	0.3506	NEUTRAL	NA	6	"ZNF14,ZNF253,ZNF506,ZNF682,ZNF90,ZNF93"
TCGA.AG.A016.01A	19	19843670	24310438	190	-0.4691	NEUTRAL	NA	32	"ZNF100,ZNF14,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AG.3891.01A	19	19843670	30199122	201	-0.027	NEUTRAL	NA	37	"C19orf12,PLEKHF1,POP4,UQCRFS1,VSTM2B,ZNF100,ZNF14,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AG.3906.01A	19	19843670	30199122	201	-0.1935	NEUTRAL	NA	37	"C19orf12,PLEKHF1,POP4,UQCRFS1,VSTM2B,ZNF100,ZNF14,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AA.3930.01A	19	19843670	31767402	228	-0.1793	NEUTRAL	NA	41	"C19orf12,CCNE1,PLEKHF1,POP4,TSHZ3,UQCRFS1,URI1,VSTM2B,ZNF100,ZNF14,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF536,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.EI.6509	19	19848716	19939386	21	-0.2432	NEUTRAL	NA	1	ZNF506
TCGA.DC.6157	19	19872092	59095125	8189	0.0782	NEUTRAL	NA	813	Too-Many
TCGA.AM.5820	19	19887684	19898148	4	-0.0043	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	19	19905349	20230083	31	0.213	NEUTRAL	NA	5	"ZNF253,ZNF506,ZNF682,ZNF90,ZNF93"
TCGA.EI.6509	19	19945779	20101635	33	0.3438	NEUTRAL	NA	2	"ZNF253,ZNF93"
TCGA.EF.5830	19	19945779	43404295	4562	-0.0119	NEUTRAL	NA	298	Too-Many
TCGA.AA.3982	19	19970112	29303665	1302	-0.0024	NEUTRAL	NA	30	"ZNF100,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AY.A54L.01A	19	19976706	38743483	1054	-0.0889	NEUTRAL	NA	164	Too-Many
TCGA.AM.5820	19	20013986	23779498	748	-0.0228	NEUTRAL	NA	25	"ZNF100,ZNF208,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF626,ZNF676,ZNF682,ZNF708,ZNF714,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.EI.6509	19	20108223	59095125	8233	-0.1081	NEUTRAL	NA	810	Too-Many
TCGA.AA.3844	19	20171691	29880614	1525	-0.1366	NEUTRAL	NA	28	"UQCRFS1,ZNF100,ZNF208,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF626,ZNF675,ZNF676,ZNF681,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF98,ZNF99"
TCGA.AG.4009.01A	19	20216044	20230083	5	0.0367	NEUTRAL	NA	1	ZNF90
TCGA.CI.6619	19	20242273	59095125	8195	0.2587	NEUTRAL	NA	808	Too-Many
TCGA.AG.4009.01A	19	20278073	20727491	6	-0.4153	NEUTRAL	NA	2	"ZNF486,ZNF737"
TCGA.AG.3909.01A	19	20278073	20736468	9	-0.485	NEUTRAL	NA	2	"ZNF486,ZNF737"
TCGA.DY.A1DF	19	20334096	20594675	38	-0.4249	NEUTRAL	NA	0	None
TCGA.CM.6172	19	20633221	30631552	1728	-0.0438	NEUTRAL	NA	32	"C19orf12,CCNE1,PLEKHF1,POP4,UQCRFS1,URI1,VSTM2B,ZNF100,ZNF208,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF492,ZNF493,ZNF626,ZNF675,ZNF676,ZNF681,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF91,ZNF98,ZNF99"
TCGA.DC.4745	19	20723898	37878855	3550	0.3254	NEUTRAL	NA	146	Too-Many
TCGA.DM.A0XD	19	20723898	42130977	4294	-0.0367	NEUTRAL	NA	262	Too-Many
TCGA.A6.6782	19	20723898	59095125	8116	-0.022	NEUTRAL	NA	807	Too-Many
TCGA.DC.5337	19	20723898	59095125	8094	-0.0306	NEUTRAL	NA	807	Too-Many
TCGA.AG.4009.01A	19	20728561	21205541	18	0.2033	NEUTRAL	NA	4	"ZNF430,ZNF626,ZNF737,ZNF85"
TCGA.AA.A00N.01A	19	20748422	21588593	47	0.2608	NEUTRAL	NA	8	"ZNF430,ZNF431,ZNF493,ZNF626,ZNF708,ZNF714,ZNF737,ZNF85"
TCGA.A6.5661	19	20765129	28539280	908	0.138	NEUTRAL	NA	24	"ZNF100,ZNF208,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF492,ZNF493,ZNF626,ZNF675,ZNF676,ZNF681,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF85,ZNF91,ZNF98,ZNF99"
TCGA.AG.A00Y.01A	19	20807142	32873644	187	-0.126	NEUTRAL	NA	35	"C19orf12,CCNE1,PLEKHF1,POP4,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,ZNF100,ZNF208,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF492,ZNF493,ZNF507,ZNF536,ZNF626,ZNF675,ZNF676,ZNF681,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF85,ZNF91,ZNF98,ZNF99"
TCGA.AG.3725	19	20899283	43028271	4363	0.0896	NEUTRAL	NA	287	Too-Many
TCGA.F4.6461	19	20984515	45480036	4900	-0.0429	NEUTRAL	NA	351	Too-Many
TCGA.AA.3850	19	21104445	21777327	136	0.34035	NEUTRAL	NA	7	"ZNF429,ZNF430,ZNF431,ZNF493,ZNF708,ZNF714,ZNF85"
TCGA.AG.3909.01A	19	21131498	21240498	9	-0.504	NEUTRAL	NA	2	"ZNF430,ZNF85"
TCGA.AA.3509.01A	19	21133017	21588593	33	0.0226	NEUTRAL	NA	6	"ZNF430,ZNF431,ZNF493,ZNF708,ZNF714,ZNF85"
TCGA.AZ.4684.01A	19	21133017	21588593	33	-0.3614	NEUTRAL	NA	6	"ZNF430,ZNF431,ZNF493,ZNF708,ZNF714,ZNF85"
TCGA.DC.6158	19	21165166	21284389	17	-0.4209	NEUTRAL	NA	2	"ZNF430,ZNF714"
TCGA.AF.A56K	19	21169553	59095125	8048	0.1219	NEUTRAL	NA	804	Too-Many
TCGA.AG.4009.01A	19	21216210	21240498	4	-0.4749	NEUTRAL	NA	1	ZNF430
TCGA.AA.A010.01A	19	21216210	23845797	119	0.0276	NEUTRAL	NA	19	"ZNF100,ZNF208,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF492,ZNF493,ZNF675,ZNF676,ZNF708,ZNF714,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.AG.4009.01A	19	21281004	21588593	27	0.2131	NEUTRAL	NA	4	"ZNF431,ZNF493,ZNF708,ZNF714"
TCGA.AG.3909.01A	19	21281004	21609074	33	0.3309	NEUTRAL	NA	4	"ZNF431,ZNF493,ZNF708,ZNF714"
TCGA.DC.6158	19	21285274	21602089	67	-0.0041	NEUTRAL	NA	4	"ZNF431,ZNF493,ZNF708,ZNF714"
TCGA.A6.6653	19	21414751	59095125	8025	-0.0266	NEUTRAL	NA	801	Too-Many
TCGA.AG.4009.01A	19	21605682	21720535	13	-0.1515	NEUTRAL	NA	2	"ZNF429,ZNF493"
TCGA.AZ.4684.01A	19	21605682	23544578	62	0.3368	NEUTRAL	NA	14	"ZNF100,ZNF208,ZNF257,ZNF429,ZNF43,ZNF492,ZNF493,ZNF676,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.DC.6158	19	21613396	21752008	30	-0.4733	NEUTRAL	NA	1	ZNF429
TCGA.CL.4957	19	21661036	23261224	346	-0.1324	NEUTRAL	NA	11	"ZNF100,ZNF208,ZNF257,ZNF429,ZNF43,ZNF492,ZNF676,ZNF728,ZNF729,ZNF98,ZNF99"
TCGA.F4.6460	19	21661036	44171581	4429	-0.0001	NEUTRAL	NA	306	Too-Many
TCGA.DC.6158	19	21776331	59095125	7918	0	NEUTRAL	NA	798	Too-Many
TCGA.AA.3850	19	21777465	24373082	583	-0.00165	NEUTRAL	NA	16	"ZNF100,ZNF208,ZNF254,ZNF257,ZNF43,ZNF492,ZNF675,ZNF676,ZNF681,ZNF726,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.AA.3941	19	21779954	22103357	73	-0.4545	NEUTRAL	NA	2	"ZNF100,ZNF43"
TCGA.AG.4009.01A	19	21948456	22952695	56	0.0798	NEUTRAL	NA	9	"ZNF100,ZNF208,ZNF257,ZNF43,ZNF492,ZNF676,ZNF729,ZNF98,ZNF99"
TCGA.AG.3605.01A	19	21948456	51503682	140	-0.3641	NEUTRAL	NA	551	Too-Many
TCGA.AG.3909.01A	19	21950131	22952695	55	0.3495	NEUTRAL	NA	9	"ZNF100,ZNF208,ZNF257,ZNF43,ZNF492,ZNF676,ZNF729,ZNF98,ZNF99"
TCGA.AF.3914.01A	19	21950131	23543038	57	-0.3881	NEUTRAL	NA	12	"ZNF100,ZNF208,ZNF257,ZNF43,ZNF492,ZNF676,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.AG.A01W.01A	19	21963375	34890951	79	0.0594	NEUTRAL	NA	48	"ANKRD27,C19orf12,C19orf40,CCNE1,CEBPA,CEBPG,CEP89,CHST8,DPY19L3,GPATCH1,GPI,KCTD15,KIAA0355,LRP3,LSM14A,NUDT19,PDCD5,PEPD,PLEKHF1,POP4,RGS9BP,RHPN2,SLC7A10,SLC7A9,TDRD12,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,WDR88,ZNF208,ZNF254,ZNF257,ZNF43,ZNF492,ZNF507,ZNF536,ZNF675,ZNF676,ZNF681,ZNF726,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.AG.A00C.01A	19	21990359	22952695	54	-0.1296	NEUTRAL	NA	8	"ZNF208,ZNF257,ZNF43,ZNF492,ZNF676,ZNF729,ZNF98,ZNF99"
TCGA.AA.3872	19	22084264	22104598	12	-0.1707	NEUTRAL	NA	0	None
TCGA.AA.3941	19	22116913	24455962	500	-0.392	NEUTRAL	NA	14	"ZNF208,ZNF254,ZNF257,ZNF492,ZNF675,ZNF676,ZNF681,ZNF726,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.DY.A1DF	19	22280953	22591215	62	0.3246	NEUTRAL	NA	3	"ZNF676,ZNF729,ZNF98"
TCGA.AF.6672	19	22280953	27828663	480	-0.4529	NEUTRAL	NA	12	"ZNF254,ZNF492,ZNF675,ZNF676,ZNF681,ZNF726,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.D5.6541	19	22533516	59095125	7784	-0.0511	NEUTRAL	NA	792	Too-Many
TCGA.AA.A02E.01A	19	22574299	23938175	47	0.061	NEUTRAL	NA	8	"ZNF492,ZNF675,ZNF681,ZNF728,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.AA.3862.01A	19	22585582	30099514	57	0.0165	NEUTRAL	NA	13	"POP4,UQCRFS1,VSTM2B,ZNF254,ZNF492,ZNF675,ZNF681,ZNF726,ZNF728,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.G4.6323	19	22783478	59095125	7714	-0.0212	NEUTRAL	NA	791	Too-Many
TCGA.4T.AA8H	19	22903898	55326612	6655	0.3339	NEUTRAL	NA	657	Too-Many
TCGA.CK.5914.01A	19	22952695	30097143	38	0.2496	NEUTRAL	NA	10	"UQCRFS1,VSTM2B,ZNF254,ZNF675,ZNF681,ZNF726,ZNF728,ZNF730,ZNF91,ZNF99"
TCGA.CL.4957	19	23277694	23479489	34	-0.5123	NEUTRAL	NA	1	ZNF730
TCGA.AA.3851	19	23393876	38672993	3141	0.2843	NEUTRAL	NA	137	Too-Many
TCGA.CI.6621	19	23416217	59095125	7590	0.123	NEUTRAL	NA	787	Too-Many
TCGA.F5.6812	19	23418572	59095125	7580	-0.0247	NEUTRAL	NA	787	Too-Many
TCGA.CL.4957	19	23484389	29482996	721	-0.0977	NEUTRAL	NA	5	"ZNF254,ZNF675,ZNF681,ZNF726,ZNF91"
TCGA.AA.3509.01A	19	23544943	37382347	781	-0.1239	NEUTRAL	NA	119	Too-Many
TCGA.AZ.4684.01A	19	23544943	40365981	1331	-0.213	NEUTRAL	NA	197	Too-Many
TCGA.AG.4009.01A	19	23578040	30193568	30	0.2061	NEUTRAL	NA	10	"C19orf12,PLEKHF1,POP4,UQCRFS1,VSTM2B,ZNF254,ZNF675,ZNF681,ZNF726,ZNF91"
TCGA.AG.A00C.01A	19	23578040	30303823	31	0.1489	NEUTRAL	NA	11	"C19orf12,CCNE1,PLEKHF1,POP4,UQCRFS1,VSTM2B,ZNF254,ZNF675,ZNF681,ZNF726,ZNF91"
TCGA.AF.3914.01A	19	23844863	33666254	186	-0.0547	NEUTRAL	NA	27	"ANKRD27,C19orf12,C19orf40,CCNE1,CEP89,DPY19L3,GPATCH1,NUDT19,PDCD5,PLEKHF1,POP4,RGS9BP,RHPN2,SLC7A9,TDRD12,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,WDR88,ZNF254,ZNF507,ZNF536,ZNF675,ZNF681,ZNF726"
TCGA.AG.3909.01A	19	23941470	32972938	66	0.058	NEUTRAL	NA	15	"C19orf12,CCNE1,DPY19L3,PLEKHF1,POP4,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,ZNF254,ZNF507,ZNF536,ZNF681,ZNF726"
TCGA.AM.5820	19	23957072	24112776	63	-0.0884	NEUTRAL	NA	1	ZNF726
TCGA.CI.6624	19	23989818	59095125	7446	-0.0392	NEUTRAL	NA	784	Too-Many
TCGA.CM.4746	19	24028480	27828663	96	-0.0867	NEUTRAL	NA	2	"ZNF254,ZNF726"
TCGA.4N.A93T	19	24040717	59095125	7448	-0.0686	NEUTRAL	NA	784	Too-Many
TCGA.A6.3807	19	24084418	32348352	1562	0.2964	NEUTRAL	NA	12	"C19orf12,CCNE1,PLEKHF1,POP4,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,ZNF254,ZNF536,ZNF726"
TCGA.AM.5820	19	24133480	31135210	1160	0.1429	NEUTRAL	NA	9	"C19orf12,CCNE1,PLEKHF1,POP4,UQCRFS1,URI1,VSTM2B,ZNF254,ZNF536"
TCGA.AG.A011.01A	19	24270032	55317399	3628	-0.2531	NEUTRAL	NA	650	Too-Many
TCGA.AA.A010.01A	19	24288758	30054716	11	-0.0779	NEUTRAL	NA	3	"UQCRFS1,VSTM2B,ZNF254"
TCGA.D5.5540	19	24340501	59095125	7377	-0.0245	NEUTRAL	NA	782	Too-Many
TCGA.AU.3779	19	24373825	31268771	1141	0.2124	NEUTRAL	NA	8	"C19orf12,CCNE1,PLEKHF1,POP4,UQCRFS1,URI1,VSTM2B,ZNF536"
TCGA.AG.3882	19	24461654	59095125	7360	0.2799	NEUTRAL	NA	782	Too-Many
TCGA.F4.6704	19	24461654	59095125	7350	-0.1918	NEUTRAL	NA	782	Too-Many
TCGA.CA.5797	19	24503984	59095125	7349	0.0905	NEUTRAL	NA	782	Too-Many
TCGA.DC.6155	19	24503984	59095125	7327	-0.053	NEUTRAL	NA	782	Too-Many
TCGA.A6.6142	19	24505636	59095125	7357	0.1096	NEUTRAL	NA	782	Too-Many
TCGA.EI.6513	19	24505636	59095125	7358	-0.0318	NEUTRAL	NA	782	Too-Many
TCGA.F4.6855	19	24505636	59095125	7336	0.3114	NEUTRAL	NA	782	Too-Many
TCGA.DY.A1DG	19	27828663	28975926	324	0.3098	NEUTRAL	NA	0	None
TCGA.AD.6965	19	27828663	33860035	1913	0.1018	NEUTRAL	NA	26	"ANKRD27,C19orf12,C19orf40,CCNE1,CEBPA,CEP89,DPY19L3,GPATCH1,LRP3,NUDT19,PDCD5,PLEKHF1,POP4,RGS9BP,RHPN2,SLC7A10,SLC7A9,TDRD12,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,WDR88,ZNF507,ZNF536"
TCGA.AA.3712	19	27828663	43028271	3621	0.3232	NEUTRAL	NA	264	Too-Many
TCGA.SS.A7HO	19	27828663	57201721	6837	-0.015	NEUTRAL	NA	717	Too-Many
TCGA.A6.A567	19	27828663	59095125	7308	-0.0046	NEUTRAL	NA	782	Too-Many
TCGA.AA.3556	19	27828663	59095125	7339	-0.0131	NEUTRAL	NA	782	Too-Many
TCGA.D5.6928	19	27828663	59095125	7339	0.3172	NEUTRAL	NA	782	Too-Many
TCGA.D5.6931	19	27828663	59095125	7336	0.2763	NEUTRAL	NA	782	Too-Many
TCGA.DC.4749	19	27828663	59095125	7356	0.2401	NEUTRAL	NA	782	Too-Many
TCGA.G4.6297	19	27828663	59095125	7352	0.2139	NEUTRAL	NA	782	Too-Many
TCGA.A6.A56B	19	27960005	33635760	1850	0.2144	NEUTRAL	NA	23	"ANKRD27,C19orf12,C19orf40,CCNE1,CEP89,DPY19L3,GPATCH1,NUDT19,PDCD5,PLEKHF1,POP4,RGS9BP,RHPN2,SLC7A9,TDRD12,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,WDR88,ZNF507,ZNF536"
TCGA.AF.6672	19	27960005	59095125	7341	-0.0238	NEUTRAL	NA	782	Too-Many
TCGA.AA.3858	19	27998565	51705038	5275	0.1005	NEUTRAL	NA	544	Too-Many
TCGA.F5.6810	19	27998565	59095125	7340	-0.0816	NEUTRAL	NA	782	Too-Many
TCGA.AA.3955	19	28069336	50423725	4950	0.0948	NEUTRAL	NA	502	Too-Many
TCGA.AA.3994	19	28080421	59095125	7328	0.0415	NEUTRAL	NA	782	Too-Many
TCGA.AA.3850	19	28141688	28767352	214	-0.07355	NEUTRAL	NA	0	None
TCGA.AA.3941	19	28273327	29282426	374	-0.3569	NEUTRAL	NA	0	None
TCGA.AF.2690	19	28381005	59095125	7309	-0.0257	NEUTRAL	NA	782	Too-Many
TCGA.AH.6644	19	28539280	59095125	7213	-0.0601	NEUTRAL	NA	782	Too-Many
TCGA.AF.3913	19	28649622	28655992	5	0.0986	NEUTRAL	NA	0	None
TCGA.A6.6648	19	28686261	28941185	124	-0.2946	NEUTRAL	NA	0	None
TCGA.A6.5662	19	28722131	59095125	7128	0.0706	NEUTRAL	NA	782	Too-Many
TCGA.AA.3855	19	28722131	59095125	7107	0.0064	NEUTRAL	NA	782	Too-Many
TCGA.AA.3850	19	28769518	59095125	7121	0.35715	NEUTRAL	NA	782	Too-Many
TCGA.A6.6648	19	28950203	59095125	7045	0.1678	NEUTRAL	NA	782	Too-Many
TCGA.DY.A1DG	19	28976538	59095125	7028	-0.0423	NEUTRAL	NA	782	Too-Many
TCGA.AA.3941	19	29285470	59095125	6938	0.0531	NEUTRAL	NA	782	Too-Many
TCGA.AA.3982	19	29304285	59095125	6949	0.2887	NEUTRAL	NA	782	Too-Many
TCGA.CL.4957	19	29483169	59095125	6874	0.2642	NEUTRAL	NA	782	Too-Many
TCGA.AA.A02F.01A	19	29698418	36233449	401	0.3689	NEUTRAL	NA	74	"ANKRD27,ATP4A,C19orf12,C19orf40,CCNE1,CD22,CEBPA,CEBPG,CEP89,CHST8,COX6B1,DMKN,DPY19L3,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GPATCH1,GPI,GRAMD1A,HAMP,HAUS5,HPN,IGFLR1,KCTD15,KIAA0355,KMT2B,KRTDAP,LGI4,LRP3,LSM14A,LSR,MAG,NUDT19,PDCD2L,PDCD5,PEPD,PLEKHF1,POP4,RBM42,RGS9BP,RHPN2,SBSN,SCGB2B2,SCN1B,SLC7A10,SLC7A9,TDRD12,THEG5,TMEM147,TSHZ3,U2AF1L4,UBA2,UPK1A,UQCRFS1,URI1,USF2,VSTM2B,WDR88,WTIP,ZBTB32,ZNF181,ZNF30,ZNF302,ZNF507,ZNF536,ZNF599,ZNF792"
TCGA.AG.A015.01A	19	29698418	47885220	2254	0.2511	NEUTRAL	NA	397	Too-Many
TCGA.AG.A025.01A	19	29698418	50183705	2907	-0.3199	NEUTRAL	NA	490	Too-Many
TCGA.AA.3980.01A	19	29698418	54802515	4133	-0.2618	NEUTRAL	NA	633	Too-Many
TCGA.DY.A1DF	19	29876725	31390462	527	0.3132	NEUTRAL	NA	7	"C19orf12,CCNE1,PLEKHF1,POP4,URI1,VSTM2B,ZNF536"
TCGA.AA.3844	19	29880706	30456851	217	0.225	NEUTRAL	NA	6	"C19orf12,CCNE1,PLEKHF1,POP4,URI1,VSTM2B"
TCGA.AH.6549.01A	19	30018096	59082320	4924	0.2769	NEUTRAL	NA	781	Too-Many
TCGA.DM.A28M.01A	19	30019253	40365981	1304	-0.1599	NEUTRAL	NA	191	Too-Many
TCGA.CK.5914.01A	19	30099514	30314514	18	-0.5106	NEUTRAL	NA	4	"C19orf12,CCNE1,PLEKHF1,POP4"
TCGA.AF.3913	19	30201322	59095125	6521	-0.0156	NEUTRAL	NA	778	Too-Many
TCGA.AA.3842	19	30412135	59095125	6477	0.1438	NEUTRAL	NA	776	Too-Many
TCGA.AA.A010.01A	19	30433414	33349309	93	0.184	NEUTRAL	NA	12	"ANKRD27,DPY19L3,NUDT19,PDCD5,RGS9BP,SLC7A9,TDRD12,THEG5,TSHZ3,URI1,ZNF507,ZNF536"
TCGA.AA.3844	19	30458362	30508804	10	-0.3466	NEUTRAL	NA	1	URI1
TCGA.AG.3891.01A	19	30462021	30936023	11	-0.3112	NEUTRAL	NA	2	"URI1,ZNF536"
TCGA.AG.3906.01A	19	30462021	32873644	23	-0.2927	NEUTRAL	NA	5	"THEG5,TSHZ3,URI1,ZNF507,ZNF536"
TCGA.AA.A01Q.01A	19	30462021	33484830	110	-0.1269	NEUTRAL	NA	15	"ANKRD27,C19orf40,CEP89,DPY19L3,NUDT19,PDCD5,RGS9BP,RHPN2,SLC7A9,TDRD12,THEG5,TSHZ3,URI1,ZNF507,ZNF536"
TCGA.AG.A00C.01A	19	30462021	35862225	345	0.1771	NEUTRAL	NA	52	"ANKRD27,C19orf40,CD22,CEBPA,CEBPG,CEP89,CHST8,DPY19L3,FAM187B,FFAR1,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GPATCH1,GPI,GRAMD1A,HAMP,HPN,KCTD15,KIAA0355,LGI4,LRP3,LSM14A,LSR,MAG,NUDT19,PDCD2L,PDCD5,PEPD,RGS9BP,RHPN2,SCGB2B2,SCN1B,SLC7A10,SLC7A9,TDRD12,THEG5,TSHZ3,UBA2,URI1,USF2,WDR88,WTIP,ZNF181,ZNF30,ZNF302,ZNF507,ZNF536,ZNF599,ZNF792"
TCGA.AG.4009.01A	19	30476088	33089009	46	0.0999	NEUTRAL	NA	8	"ANKRD27,DPY19L3,PDCD5,THEG5,TSHZ3,URI1,ZNF507,ZNF536"
TCGA.AA.3844	19	30510210	55225612	5402	0.1587	NEUTRAL	NA	638	Too-Many
TCGA.AG.4015	19	30751706	59095125	6370	0.3699	NEUTRAL	NA	775	Too-Many
TCGA.AA.3560	19	30906978	59095125	6343	-0.0248	NEUTRAL	NA	775	Too-Many
TCGA.CK.5914.01A	19	30934442	31840044	8	0.2857	NEUTRAL	NA	2	"TSHZ3,ZNF536"
TCGA.AA.A02E.01A	19	30936023	32971253	30	0.0891	NEUTRAL	NA	5	"DPY19L3,THEG5,TSHZ3,ZNF507,ZNF536"
TCGA.AG.3891.01A	19	31025702	33409092	82	0.1996	NEUTRAL	NA	12	"ANKRD27,CEP89,DPY19L3,NUDT19,PDCD5,RGS9BP,SLC7A9,TDRD12,THEG5,TSHZ3,ZNF507,ZNF536"
TCGA.CM.6172	19	31135210	34687808	1088	-0.0604	NEUTRAL	NA	23	"ANKRD27,C19orf40,CEBPA,CEBPG,CEP89,CHST8,DPY19L3,GPATCH1,KCTD15,LRP3,LSM14A,NUDT19,PDCD5,PEPD,RGS9BP,RHPN2,SLC7A10,SLC7A9,TDRD12,THEG5,TSHZ3,WDR88,ZNF507"
TCGA.F4.6463	19	31340751	59095125	6194	0.2501	NEUTRAL	NA	774	Too-Many
TCGA.DY.A1DF	19	31563965	31933543	125	0.3671	NEUTRAL	NA	1	TSHZ3
TCGA.AA.3930.01A	19	31770052	36213857	463	0.1934	NEUTRAL	NA	64	"ANKRD27,ATP4A,C19orf40,CD22,CEBPA,CEBPG,CEP89,CHST8,COX6B1,DMKN,DPY19L3,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GPATCH1,GPI,GRAMD1A,HAMP,HAUS5,HPN,KCTD15,KIAA0355,KMT2B,KRTDAP,LGI4,LRP3,LSM14A,LSR,MAG,NUDT19,PDCD2L,PDCD5,PEPD,RBM42,RGS9BP,RHPN2,SBSN,SCGB2B2,SCN1B,SLC7A10,SLC7A9,TDRD12,THEG5,TMEM147,TSHZ3,UBA2,UPK1A,USF2,WDR88,WTIP,ZBTB32,ZNF181,ZNF30,ZNF302,ZNF507,ZNF599,ZNF792"
TCGA.AA.3872	19	32141582	37076029	1225	0.1202	NEUTRAL	NA	96	"ALKBH6,ANKRD27,APLP1,ARHGAP33,ATP4A,C19orf40,CAPNS1,CD22,CEBPA,CEBPG,CEP89,CHST8,CLIP3,COX6B1,COX7A1,DMKN,DPY19L3,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GPATCH1,GPI,GRAMD1A,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KCTD15,KIAA0355,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LRFN3,LRP3,LSM14A,LSR,MAG,NFKBID,NPHS1,NUDT19,OVOL3,PDCD2L,PDCD5,PEPD,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,RGS9BP,RHPN2,SBSN,SCGB2B2,SCN1B,SDHAF1,SLC7A10,SLC7A9,SYNE4,TBCB,TDRD12,THAP8,TMEM147,TYROBP,U2AF1L4,UBA2,UPK1A,USF2,WDR62,WDR88,WTIP,ZBTB32,ZFP14,ZFP82,ZNF146,ZNF181,ZNF260,ZNF30,ZNF302,ZNF507,ZNF529,ZNF565,ZNF566,ZNF599,ZNF792"
TCGA.AF.2687	19	32708611	35483756	727	0.169	NEUTRAL	NA	32	"ANKRD27,C19orf40,CEBPA,CEBPG,CEP89,CHST8,DPY19L3,GPATCH1,GPI,KCTD15,KIAA0355,LRP3,LSM14A,NUDT19,PDCD2L,PDCD5,PEPD,RGS9BP,RHPN2,SCGB2B2,SLC7A10,SLC7A9,TDRD12,UBA2,WDR88,WTIP,ZNF181,ZNF30,ZNF302,ZNF507,ZNF599,ZNF792"
TCGA.AM.5820	19	32824309	33673721	216	-0.0171	NEUTRAL	NA	13	"ANKRD27,C19orf40,CEP89,DPY19L3,GPATCH1,NUDT19,PDCD5,RGS9BP,RHPN2,SLC7A9,TDRD12,WDR88,ZNF507"
TCGA.CK.5914.01A	19	32843699	32902107	9	-0.2241	NEUTRAL	NA	2	"DPY19L3,ZNF507"
TCGA.AG.3906.01A	19	32899112	32929971	6	0.2934	NEUTRAL	NA	1	DPY19L3
TCGA.AG.3906.01A	19	32930640	33122268	33	-0.2065	NEUTRAL	NA	3	"ANKRD27,DPY19L3,PDCD5"
TCGA.AD.6888	19	33022454	59095125	5653	-0.0549	NEUTRAL	NA	770	Too-Many
TCGA.AG.3909.01A	19	33098501	33202626	22	-0.2016	NEUTRAL	NA	3	"ANKRD27,NUDT19,RGS9BP"
TCGA.AG.3906.01A	19	33130225	33609864	75	0.2719	NEUTRAL	NA	9	"ANKRD27,C19orf40,CEP89,GPATCH1,NUDT19,RGS9BP,RHPN2,SLC7A9,TDRD12"
TCGA.CK.5914.01A	19	33210890	33470900	47	0.2248	NEUTRAL	NA	5	"C19orf40,CEP89,RHPN2,SLC7A9,TDRD12"
TCGA.AA.A00N.01A	19	33239313	33444553	36	0.1186	NEUTRAL	NA	3	"CEP89,SLC7A9,TDRD12"
TCGA.DY.A1DF	19	33303434	33551060	71	0.36	NEUTRAL	NA	4	"C19orf40,CEP89,RHPN2,SLC7A9"
TCGA.AG.3909.01A	19	33321462	33439155	27	0.2054	NEUTRAL	NA	2	"CEP89,SLC7A9"
TCGA.AA.A02E.01A	19	33484830	39390067	803	-0.2292	NEUTRAL	NA	136	Too-Many
TCGA.AA.A01Q.01A	19	33493691	33655041	36	-0.1543	NEUTRAL	NA	3	"GPATCH1,RHPN2,WDR88"
TCGA.AA.A00N.01A	19	33503495	33603344	17	-0.1025	NEUTRAL	NA	2	"GPATCH1,RHPN2"
TCGA.AA.A010.01A	19	33503495	33655041	33	-0.1168	NEUTRAL	NA	3	"GPATCH1,RHPN2,WDR88"
TCGA.CK.5914.01A	19	33503495	34302680	77	-0.155	NEUTRAL	NA	10	"CEBPA,CEBPG,CHST8,GPATCH1,KCTD15,LRP3,PEPD,RHPN2,SLC7A10,WDR88"
TCGA.AG.4009.01A	19	33512418	33609864	19	0.2003	NEUTRAL	NA	2	"GPATCH1,RHPN2"
TCGA.AG.3909.01A	19	33512418	34895516	103	-0.0803	NEUTRAL	NA	14	"CEBPA,CEBPG,CHST8,GPATCH1,GPI,KCTD15,KIAA0355,LRP3,LSM14A,PDCD2L,PEPD,RHPN2,SLC7A10,WDR88"
TCGA.AA.3861.01A	19	33512418	40354064	1095	0.2865	NEUTRAL	NA	172	Too-Many
TCGA.AA.3862.01A	19	33512418	40354064	1103	0.2992	NEUTRAL	NA	172	Too-Many
TCGA.AA.A02K.01A	19	33603345	33687571	20	0.0713	NEUTRAL	NA	3	"GPATCH1,LRP3,WDR88"
TCGA.AG.4009.01A	19	33615964	33638506	7	-0.4718	NEUTRAL	NA	2	"GPATCH1,WDR88"
TCGA.A6.A56B	19	33639078	48658749	2802	-0.0266	NEUTRAL	NA	392	Too-Many
TCGA.AG.4009.01A	19	33639631	33666254	7	0.3176	NEUTRAL	NA	1	WDR88
TCGA.AA.A02K.01A	19	33693706	33882164	18	-0.3727	NEUTRAL	NA	5	"CEBPA,CEBPG,LRP3,PEPD,SLC7A10"
TCGA.AG.3891.01A	19	33695514	33870095	14	0.175	NEUTRAL	NA	4	"CEBPA,CEBPG,LRP3,SLC7A10"
TCGA.AG.A016.01A	19	33701655	35761303	153	0.3512	NEUTRAL	NA	29	"CEBPA,CEBPG,CHST8,FAM187B,FXYD1,FXYD3,FXYD5,FXYD7,GPI,GRAMD1A,HPN,KCTD15,KIAA0355,LGI4,LSM14A,LSR,PDCD2L,PEPD,SCGB2B2,SCN1B,SLC7A10,UBA2,USF2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AG.3906.01A	19	33702084	34263411	17	-0.0573	NEUTRAL	NA	5	"CEBPA,CEBPG,CHST8,PEPD,SLC7A10"
TCGA.AA.A01Q.01A	19	33792237	35451088	89	-0.0093	NEUTRAL	NA	17	"CEBPA,CEBPG,CHST8,GPI,KCTD15,KIAA0355,LSM14A,PDCD2L,PEPD,SCGB2B2,UBA2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AF.3914.01A	19	33792237	35753401	160	-0.0134	NEUTRAL	NA	27	"CEBPA,CEBPG,CHST8,FAM187B,FXYD1,FXYD3,FXYD5,FXYD7,GPI,GRAMD1A,HPN,KCTD15,KIAA0355,LGI4,LSM14A,LSR,PDCD2L,PEPD,SCGB2B2,SCN1B,UBA2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AM.5820	19	33803545	33876393	18	-0.2336	NEUTRAL	NA	1	CEBPG
TCGA.AG.3891.01A	19	33878223	34263411	15	-0.2828	NEUTRAL	NA	2	"CHST8,PEPD"
TCGA.AA.A010.01A	19	33878748	34263411	17	0.0314	NEUTRAL	NA	2	"CHST8,PEPD"
TCGA.AA.A02K.01A	19	33892589	41945300	1396	0.0063	NEUTRAL	NA	207	Too-Many
TCGA.AG.4009.01A	19	33892600	35451731	99	0.1315	NEUTRAL	NA	15	"CHST8,GPI,KCTD15,KIAA0355,LSM14A,PDCD2L,PEPD,SCGB2B2,UBA2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AD.6965	19	33987073	59095125	5381	0.1638	NEUTRAL	NA	755	Too-Many
TCGA.AM.5820	19	34065832	34090876	10	-0.2331	NEUTRAL	NA	0	None
TCGA.AG.3891.01A	19	34292033	34872297	33	0.3619	NEUTRAL	NA	4	"GPI,KCTD15,KIAA0355,LSM14A"
TCGA.AG.3906.01A	19	34292033	34884084	34	0.289	NEUTRAL	NA	4	"GPI,KCTD15,KIAA0355,LSM14A"
TCGA.CK.5914.01A	19	34303653	34895516	40	0.3528	NEUTRAL	NA	5	"GPI,KCTD15,KIAA0355,LSM14A,PDCD2L"
TCGA.AM.5820	19	34320853	35040320	175	-0.1083	NEUTRAL	NA	6	"GPI,KIAA0355,LSM14A,PDCD2L,UBA2,WTIP"
TCGA.AA.3529	19	34432229	59095125	5235	0.3531	NEUTRAL	NA	752	Too-Many
TCGA.AA.A00N.01A	19	34663531	34895516	39	-0.0331	NEUTRAL	NA	4	"GPI,KIAA0355,LSM14A,PDCD2L"
TCGA.AA.3693	19	34668293	35069969	84	0.1293	NEUTRAL	NA	6	"GPI,KIAA0355,LSM14A,PDCD2L,UBA2,WTIP"
TCGA.AA.A010.01A	19	34699797	34838741	17	0.1342	NEUTRAL	NA	2	"KIAA0355,LSM14A"
TCGA.AA.A00L.01A	19	34838741	34890398	18	0.1755	NEUTRAL	NA	2	"GPI,KIAA0355"
TCGA.AG.3891.01A	19	34887448	35741180	102	0.2272	NEUTRAL	NA	20	"FAM187B,FXYD1,FXYD3,FXYD5,FXYD7,GPI,GRAMD1A,HPN,LGI4,LSR,PDCD2L,SCGB2B2,SCN1B,UBA2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AG.3906.01A	19	34895516	34951362	17	-0.0531	NEUTRAL	NA	2	"PDCD2L,UBA2"
TCGA.AA.A010.01A	19	34922735	34949626	10	-0.0806	NEUTRAL	NA	1	UBA2
TCGA.CK.5914.01A	19	34929512	35837450	132	-0.1373	NEUTRAL	NA	22	"CD22,FAM187B,FXYD1,FXYD3,FXYD5,FXYD7,GRAMD1A,HAMP,HPN,LGI4,LSR,MAG,SCGB2B2,SCN1B,UBA2,USF2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AG.3909.01A	19	34941129	35084385	15	0.2506	NEUTRAL	NA	3	"SCGB2B2,UBA2,WTIP"
TCGA.AA.A00N.01A	19	34941129	35085043	16	-0.2262	NEUTRAL	NA	3	"SCGB2B2,UBA2,WTIP"
TCGA.AG.3906.01A	19	34985420	35451731	26	-0.2594	NEUTRAL	NA	7	"SCGB2B2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AA.A010.01A	19	34991017	35454454	25	0.22	NEUTRAL	NA	7	"SCGB2B2,WTIP,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AM.5820	19	35040717	36806474	371	0.212	NEUTRAL	NA	65	"ALKBH6,APLP1,ARHGAP33,ATP4A,CAPNS1,CD22,CLIP3,COX6B1,COX7A1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GRAMD1A,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LRFN3,LSR,MAG,NFKBID,NPHS1,OVOL3,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SCGB2B2,SCN1B,SDHAF1,SYNE4,TBCB,THAP8,TMEM147,TYROBP,U2AF1L4,UPK1A,USF2,WDR62,ZBTB32,ZNF146,ZNF181,ZNF30,ZNF302,ZNF565,ZNF599,ZNF792"
TCGA.CM.5862	19	35052625	59095125	5087	-0.2334	NEUTRAL	NA	746	Too-Many
TCGA.AG.3591	19	35090063	43290772	1390	-0.2401	NEUTRAL	NA	230	Too-Many
TCGA.CM.6172	19	35096263	59095125	5091	-0.0359	NEUTRAL	NA	745	Too-Many
TCGA.AA.3693	19	35173544	52460049	3279	0.0692	NEUTRAL	NA	532	Too-Many
TCGA.AA.A00L.01A	19	35258179	35803143	72	0.2816	NEUTRAL	NA	16	"FAM187B,FXYD1,FXYD3,FXYD5,FXYD7,GRAMD1A,HAMP,HPN,LGI4,LSR,MAG,SCN1B,USF2,ZNF30,ZNF599,ZNF792"
TCGA.D5.6533	19	35344257	47602576	2112	-0.1388	NEUTRAL	NA	350	Too-Many
TCGA.DY.A1DF	19	35415020	36637613	252	0.2993	NEUTRAL	NA	58	"ALKBH6,APLP1,ARHGAP33,ATP4A,CAPNS1,CD22,CLIP3,COX6B1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GRAMD1A,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LRFN3,LSR,MAG,NFKBID,NPHS1,OVOL3,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SCN1B,SDHAF1,SYNE4,TBCB,THAP8,TMEM147,TYROBP,U2AF1L4,UPK1A,USF2,WDR62,ZBTB32,ZNF30,ZNF792"
TCGA.AA.A00Q.01A	19	35448808	36685880	309	0.3106	NEUTRAL	NA	59	"ALKBH6,APLP1,ARHGAP33,ATP4A,CAPNS1,CD22,CLIP3,COX6B1,COX7A1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GRAMD1A,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LRFN3,LSR,MAG,NFKBID,NPHS1,OVOL3,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SCN1B,SDHAF1,SYNE4,TBCB,THAP8,TMEM147,TYROBP,U2AF1L4,UPK1A,USF2,WDR62,ZBTB32,ZNF565,ZNF792"
TCGA.AF.2687	19	35485268	59095125	4980	-0.2234	NEUTRAL	NA	740	Too-Many
TCGA.AG.4009.01A	19	35499975	35529973	14	-0.4227	NEUTRAL	NA	2	"GRAMD1A,SCN1B"
TCGA.AA.A010.01A	19	35540156	35739760	40	0.0335	NEUTRAL	NA	8	"FAM187B,FXYD1,FXYD3,FXYD5,FXYD7,HPN,LGI4,LSR"
TCGA.AG.3906.01A	19	35540156	35741180	32	-0.0149	NEUTRAL	NA	8	"FAM187B,FXYD1,FXYD3,FXYD5,FXYD7,HPN,LGI4,LSR"
TCGA.AG.4009.01A	19	35613652	35633569	9	-0.2528	NEUTRAL	NA	3	"FXYD1,FXYD3,LGI4"
TCGA.AA.A01Q.01A	19	35622271	35752760	27	0.049	NEUTRAL	NA	6	"FAM187B,FXYD1,FXYD5,FXYD7,LGI4,LSR"
TCGA.AG.3909.01A	19	35654940	35761587	13	0.3015	NEUTRAL	NA	4	"FAM187B,FXYD5,LSR,USF2"
TCGA.AG.A01W.01A	19	35717573	37790353	41	0.1192	NEUTRAL	NA	69	"ALKBH6,APLP1,ARHGAP33,ATP4A,CAPNS1,CD22,CLIP3,COX6B1,COX7A1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,GAPDHS,HAMP,HAUS5,HCST,HSPB6,IGFLR1,KIRREL2,KMT2B,KRTDAP,LIN37,LOC101927572,LOC728485,LRFN3,LSR,MAG,NFKBID,NPHS1,OVOL3,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SDHAF1,SYNE4,TBCB,THAP8,TMEM147,TYROBP,U2AF1L4,UPK1A,USF2,WDR62,ZBTB32,ZFP14,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF529,ZNF565,ZNF566,ZNF567,ZNF568,ZNF585A,ZNF585B,ZNF790,ZNF829,ZNF850"
TCGA.AG.3909.01A	19	35761916	35915093	30	-0.171	NEUTRAL	NA	6	"CD22,FFAR1,FFAR3,HAMP,MAG,USF2"
TCGA.AG.A016.01A	19	35769571	36036604	60	0.2163	NEUTRAL	NA	12	"CD22,DMKN,FFAR1,FFAR2,FFAR3,GAPDHS,HAMP,KRTDAP,MAG,SBSN,TMEM147,USF2"
TCGA.AG.3891.01A	19	35786268	35791003	3	-0.1008	NEUTRAL	NA	1	MAG
TCGA.AA.A010.01A	19	35786268	35835684	18	-0.127	NEUTRAL	NA	2	"CD22,MAG"
TCGA.AG.4009.01A	19	35790405	35803143	7	0.0125	NEUTRAL	NA	1	MAG
TCGA.AG.3906.01A	19	35800790	36036604	51	0.1546	NEUTRAL	NA	10	"CD22,DMKN,FFAR1,FFAR2,FFAR3,GAPDHS,KRTDAP,MAG,SBSN,TMEM147"
TCGA.AF.3914.01A	19	35800790	36041430	55	0.2011	NEUTRAL	NA	11	"ATP4A,CD22,DMKN,FFAR1,FFAR2,FFAR3,GAPDHS,KRTDAP,MAG,SBSN,TMEM147"
TCGA.AG.A00C.01A	19	35940569	35992985	9	-0.3774	NEUTRAL	NA	3	"DMKN,FFAR2,KRTDAP"
TCGA.AA.A01Q.01A	19	35978539	36104587	48	-0.4977	NEUTRAL	NA	7	"ATP4A,DMKN,GAPDHS,HAUS5,KRTDAP,SBSN,TMEM147"
TCGA.AG.A00C.01A	19	35993669	37117661	266	0.3058	NEUTRAL	NA	47	"ALKBH6,APLP1,ARHGAP33,ATP4A,CAPNS1,CLIP3,COX6B1,COX7A1,DMKN,ETV2,GAPDHS,HAUS5,HCST,HSPB6,IGFLR1,KIRREL2,KMT2B,LIN37,LOC101927572,LRFN3,NFKBID,NPHS1,OVOL3,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SDHAF1,SYNE4,TBCB,THAP8,TMEM147,TYROBP,U2AF1L4,UPK1A,WDR62,ZBTB32,ZFP14,ZFP82,ZNF146,ZNF260,ZNF382,ZNF529,ZNF565,ZNF566"
TCGA.AA.A010.01A	19	35994255	36047774	33	0.1945	NEUTRAL	NA	5	"ATP4A,DMKN,GAPDHS,SBSN,TMEM147"
TCGA.CK.5914.01A	19	35994255	36303998	140	-0.136	NEUTRAL	NA	20	"ARHGAP33,ATP4A,COX6B1,DMKN,ETV2,GAPDHS,HAUS5,HSPB6,IGFLR1,KMT2B,LIN37,PRODH2,PROSER3,PSENEN,RBM42,SBSN,TMEM147,U2AF1L4,UPK1A,ZBTB32"
TCGA.AA.A00L.01A	19	36017529	36564207	169	0.2714	NEUTRAL	NA	33	"ALKBH6,APLP1,ARHGAP33,ATP4A,CLIP3,COX6B1,ETV2,GAPDHS,HAUS5,HCST,HSPB6,IGFLR1,KIRREL2,KMT2B,LIN37,LOC101927572,LRFN3,NFKBID,NPHS1,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SDHAF1,SYNE4,THAP8,TMEM147,TYROBP,U2AF1L4,UPK1A,WDR62,ZBTB32"
TCGA.AG.3891.01A	19	36018959	36149423	50	0.1621	NEUTRAL	NA	8	"ATP4A,COX6B1,ETV2,GAPDHS,HAUS5,RBM42,SBSN,TMEM147"
TCGA.AG.4009.01A	19	36029159	36036604	8	0.15	NEUTRAL	NA	2	"GAPDHS,TMEM147"
TCGA.AG.3906.01A	19	36037359	36043899	5	-0.4448	NEUTRAL	NA	2	"ATP4A,TMEM147"
TCGA.AG.4009.01A	19	36037359	36051679	15	-0.2769	NEUTRAL	NA	2	"ATP4A,TMEM147"
TCGA.AF.3914.01A	19	36041684	36054084	15	-0.4405	NEUTRAL	NA	1	ATP4A
TCGA.AG.3906.01A	19	36044558	36168667	39	0.0795	NEUTRAL	NA	6	"ATP4A,COX6B1,ETV2,HAUS5,RBM42,UPK1A"
TCGA.AA.A00N.01A	19	36053309	36120009	13	0.1608	NEUTRAL	NA	3	"ATP4A,HAUS5,RBM42"
TCGA.AG.3909.01A	19	36104587	36113451	9	0.1401	NEUTRAL	NA	1	HAUS5
TCGA.AF.3914.01A	19	36104587	36168667	29	0.2325	NEUTRAL	NA	5	"COX6B1,ETV2,HAUS5,RBM42,UPK1A"
TCGA.AA.A01Q.01A	19	36105904	36124571	12	0.2731	NEUTRAL	NA	2	"HAUS5,RBM42"
TCGA.AA.A010.01A	19	36142097	36164084	6	-0.2176	NEUTRAL	NA	2	"COX6B1,UPK1A"
TCGA.AA.A01Q.01A	19	36157657	36231874	20	0.0861	NEUTRAL	NA	4	"IGFLR1,KMT2B,UPK1A,ZBTB32"
TCGA.AG.3909.01A	19	36164084	36217105	13	0.2374	NEUTRAL	NA	3	"KMT2B,UPK1A,ZBTB32"
TCGA.AF.3914.01A	19	36213857	36236002	22	0.0605	NEUTRAL	NA	3	"IGFLR1,KMT2B,U2AF1L4"
TCGA.AG.4009.01A	19	36216368	36236765	17	0.0507	NEUTRAL	NA	4	"IGFLR1,KMT2B,PSENEN,U2AF1L4"
TCGA.AG.3909.01A	19	36218028	36236765	16	-0.3495	NEUTRAL	NA	4	"IGFLR1,KMT2B,PSENEN,U2AF1L4"
TCGA.AA.3930.01A	19	36219634	53302929	3314	0.2424	NEUTRAL	NA	519	Too-Many
TCGA.AG.3906.01A	19	36220821	36347956	60	0.2066	NEUTRAL	NA	11	"ARHGAP33,HSPB6,IGFLR1,KIRREL2,KMT2B,LIN37,NPHS1,PRODH2,PROSER3,PSENEN,U2AF1L4"
TCGA.AG.3891.01A	19	36231239	36342135	54	0.2404	NEUTRAL	NA	9	"ARHGAP33,HSPB6,IGFLR1,LIN37,NPHS1,PRODH2,PROSER3,PSENEN,U2AF1L4"
TCGA.AA.A01Q.01A	19	36233449	36673387	158	-0.3843	NEUTRAL	NA	27	"ALKBH6,APLP1,ARHGAP33,CAPNS1,CLIP3,COX7A1,HCST,HSPB6,KIRREL2,LIN37,LOC101927572,LRFN3,NFKBID,NPHS1,OVOL3,POLR2I,PRODH2,PROSER3,PSENEN,SDHAF1,SYNE4,TBCB,THAP8,TYROBP,U2AF1L4,WDR62,ZNF565"
TCGA.AF.3914.01A	19	36236765	36279018	25	-0.4986	NEUTRAL	NA	5	"ARHGAP33,HSPB6,LIN37,PROSER3,PSENEN"
TCGA.AG.4009.01A	19	36237303	36273233	17	-0.5087	NEUTRAL	NA	5	"ARHGAP33,HSPB6,LIN37,PROSER3,PSENEN"
TCGA.A6.3808.01A	19	36239556	38794862	343	0.3252	NEUTRAL	NA	62	"ALKBH6,APLP1,ARHGAP33,C19orf33,CAPNS1,CLIP3,COX7A1,DPF1,HCST,HKR1,HSPB6,KIRREL2,LIN37,LOC101927572,LOC728485,LRFN3,NFKBID,NPHS1,OVOL3,POLR2I,PPP1R14A,PRODH2,PROSER3,SDHAF1,SIPA1L3,SPINT2,SYNE4,TBCB,THAP8,TYROBP,WDR62,WDR87,YIF1B,ZFP14,ZFP30,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF565,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AA.A02F.01A	19	36244891	43257434	1028	0.3286	NEUTRAL	NA	192	Too-Many
TCGA.AA.A010.01A	19	36257618	36339860	35	-0.2781	NEUTRAL	NA	4	"ARHGAP33,NPHS1,PRODH2,PROSER3"
TCGA.AG.4009.01A	19	36275026	36342135	28	0.3109	NEUTRAL	NA	3	"ARHGAP33,NPHS1,PRODH2"
TCGA.AA.A00N.01A	19	36275824	36322189	14	0.0911	NEUTRAL	NA	3	"ARHGAP33,NPHS1,PRODH2"
TCGA.AF.3914.01A	19	36290909	36347956	26	-0.0295	NEUTRAL	NA	3	"KIRREL2,NPHS1,PRODH2"
TCGA.AG.3909.01A	19	36290909	36362098	38	-0.1207	NEUTRAL	NA	4	"APLP1,KIRREL2,NPHS1,PRODH2"
TCGA.CK.5914.01A	19	36330107	37642453	195	-0.0812	NEUTRAL	NA	37	"ALKBH6,APLP1,CAPNS1,CLIP3,COX7A1,HCST,KIRREL2,LOC101927572,LOC728485,LRFN3,NFKBID,NPHS1,OVOL3,POLR2I,SDHAF1,SYNE4,TBCB,THAP8,TYROBP,WDR62,ZFP14,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF420,ZNF461,ZNF529,ZNF565,ZNF566,ZNF567,ZNF568,ZNF585A,ZNF790,ZNF829,ZNF850"
TCGA.AG.4009.01A	19	36347956	36369737	23	-0.4425	NEUTRAL	NA	2	"APLP1,KIRREL2"
TCGA.AF.3914.01A	19	36368896	36633770	85	-0.158	NEUTRAL	NA	16	"ALKBH6,APLP1,CAPNS1,CLIP3,HCST,LOC101927572,LRFN3,NFKBID,OVOL3,POLR2I,SDHAF1,SYNE4,TBCB,THAP8,TYROBP,WDR62"
TCGA.AA.A010.01A	19	36379387	36496184	21	-0.2825	NEUTRAL	NA	6	"HCST,LRFN3,NFKBID,SDHAF1,SYNE4,TYROBP"
TCGA.AG.3906.01A	19	36379387	36606906	71	0.1926	NEUTRAL	NA	14	"ALKBH6,CLIP3,HCST,LOC101927572,LRFN3,NFKBID,OVOL3,POLR2I,SDHAF1,SYNE4,TBCB,THAP8,TYROBP,WDR62"
TCGA.AG.3891.01A	19	36380743	36612390	75	0.32	NEUTRAL	NA	14	"ALKBH6,CLIP3,HCST,LOC101927572,LRFN3,NFKBID,OVOL3,POLR2I,SDHAF1,SYNE4,TBCB,THAP8,TYROBP,WDR62"
TCGA.AG.4009.01A	19	36430327	36577551	41	-0.0316	NEUTRAL	NA	8	"ALKBH6,CLIP3,LOC101927572,LRFN3,SDHAF1,SYNE4,THAP8,WDR62"
TCGA.AA.A010.01A	19	36502235	36508222	7	-0.2837	NEUTRAL	NA	3	"ALKBH6,CLIP3,LOC101927572"
TCGA.AA.A010.01A	19	36508526	36526330	9	0.2808	NEUTRAL	NA	3	"CLIP3,LOC101927572,THAP8"
TCGA.AG.A016.01A	19	36517001	38983080	269	0.2908	NEUTRAL	NA	55	"C19orf33,CAPNS1,CATSPERG,CLIP3,COX7A1,DPF1,FAM98C,GGN,HKR1,KCNK6,LOC101927572,LOC728485,OVOL3,POLR2I,PPP1R14A,PSMD8,RASGRP4,RYR1,SIPA1L3,SPINT2,SPRED3,TBCB,THAP8,WDR62,WDR87,YIF1B,ZFP14,ZFP30,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF565,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AA.A010.01A	19	36549641	36612390	34	0.2279	NEUTRAL	NA	4	"OVOL3,POLR2I,TBCB,WDR62"
TCGA.AG.3909.01A	19	36573917	36593881	15	-0.022	NEUTRAL	NA	1	WDR62
TCGA.AA.A00N.01A	19	36573917	36595380	18	-0.0298	NEUTRAL	NA	1	WDR62
TCGA.G4.6299	19	36579307	36610189	5	-0.2989	NEUTRAL	NA	4	"OVOL3,POLR2I,TBCB,WDR62"
TCGA.AG.4009.01A	19	36579913	36616303	21	0.3686	NEUTRAL	NA	4	"OVOL3,POLR2I,TBCB,WDR62"
TCGA.G4.6299	19	36611260	38285110	213	0.2803	NEUTRAL	NA	34	"CAPNS1,COX7A1,HKR1,LOC728485,TBCB,ZFP14,ZFP30,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF565,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AA.A00L.01A	19	36633122	36643211	8	0.0162	NEUTRAL	NA	2	"CAPNS1,COX7A1"
TCGA.AA.A010.01A	19	36642310	36685880	7	0.0869	NEUTRAL	NA	2	"COX7A1,ZNF565"
TCGA.AG.4009.01A	19	36673387	38014250	88	0.2585	NEUTRAL	NA	25	"HKR1,LOC728485,ZFP14,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF565,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF585A,ZNF585B,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AF.3914.01A	19	36673387	38704246	142	0.0486	NEUTRAL	NA	34	"DPF1,HKR1,LOC728485,SIPA1L3,WDR87,ZFP14,ZFP30,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF565,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AA.A01Q.01A	19	36673781	37642453	47	0.1405	NEUTRAL	NA	18	"LOC728485,ZFP14,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF420,ZNF461,ZNF529,ZNF565,ZNF566,ZNF567,ZNF568,ZNF585A,ZNF790,ZNF829,ZNF850"
TCGA.AA.3519	19	36707677	59095125	4743	-0.345	NEUTRAL	NA	682	Too-Many
TCGA.AG.3909.01A	19	36727323	37101500	21	-0.2849	NEUTRAL	NA	7	"ZFP14,ZFP82,ZNF146,ZNF260,ZNF382,ZNF529,ZNF566"
TCGA.AG.3906.01A	19	36727323	38591655	120	-0.1397	NEUTRAL	NA	32	"HKR1,LOC728485,SIPA1L3,WDR87,ZFP14,ZFP30,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AG.3891.01A	19	36727323	39804594	419	0.2782	NEUTRAL	NA	71	"ACTN4,C19orf33,CAPN12,CATSPERG,CCER2,DPF1,ECH1,EIF3K,FAM98C,FBXO17,FBXO27,GGN,HKR1,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,KCNK6,LGALS4,LGALS7,LGALS7B,LOC728485,LRFN1,MAP4K1,MRPS12,NCCRP1,NFKBIB,PAK4,PAPL,PPP1R14A,PSMD8,RASGRP4,RINL,RYR1,SARS2,SIPA1L3,SIRT2,SPINT2,SPRED3,SYCN,WDR87,YIF1B,ZFP14,ZFP30,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AM.5820	19	36825457	38271617	186	-0.2661	NEUTRAL	NA	29	"HKR1,LOC728485,ZFP14,ZFP30,ZFP82,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.G5.6572	19	36825457	59095125	4727	-0.0295	NEUTRAL	NA	681	Too-Many
TCGA.AA.3662	19	36848603	59095125	4734	-0.3695	NEUTRAL	NA	681	Too-Many
TCGA.AG.3909.01A	19	37117015	37838626	45	0.202	NEUTRAL	NA	14	"HKR1,LOC728485,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF567,ZNF568,ZNF585A,ZNF585B,ZNF790,ZNF829,ZNF850"
TCGA.AG.A00C.01A	19	37129505	37838041	41	-0.1378	NEUTRAL	NA	13	"HKR1,LOC728485,ZNF345,ZNF383,ZNF420,ZNF461,ZNF567,ZNF568,ZNF585A,ZNF585B,ZNF790,ZNF829,ZNF850"
TCGA.A6.3807	19	37338965	59095125	4648	0.0617	NEUTRAL	NA	671	Too-Many
TCGA.AA.A00D.01A	19	37642453	37697880	8	-0.047	NEUTRAL	NA	2	"ZNF585A,ZNF585B"
TCGA.AA.A010.01A	19	37721264	37838626	7	-0.5076	NEUTRAL	NA	2	"HKR1,ZNF383"
TCGA.CK.5914.01A	19	37721264	38202439	47	-0.0971	NEUTRAL	NA	11	"HKR1,ZFP30,ZNF383,ZNF527,ZNF540,ZNF569,ZNF570,ZNF571,ZNF607,ZNF781,ZNF793"
TCGA.AA.A01Q.01A	19	37721264	38375531	47	0.2201	NEUTRAL	NA	13	"HKR1,WDR87,ZFP30,ZNF383,ZNF527,ZNF540,ZNF569,ZNF570,ZNF571,ZNF573,ZNF607,ZNF781,ZNF793"
TCGA.AA.A00N.01A	19	37721264	38842859	118	-0.3125	NEUTRAL	NA	21	"C19orf33,CATSPERG,DPF1,HKR1,KCNK6,PPP1R14A,SIPA1L3,SPINT2,WDR87,YIF1B,ZFP30,ZNF383,ZNF527,ZNF540,ZNF569,ZNF570,ZNF571,ZNF573,ZNF607,ZNF781,ZNF793"
TCGA.AG.A01W.01A	19	37798355	37925481	23	-0.3555	NEUTRAL	NA	3	"HKR1,ZNF527,ZNF569"
TCGA.AG.A00C.01A	19	37838626	37880198	9	0.3289	NEUTRAL	NA	2	"HKR1,ZNF527"
TCGA.DC.4745	19	37893299	59095125	4597	-0.2326	NEUTRAL	NA	661	Too-Many
TCGA.AG.A00C.01A	19	37903471	38103754	22	-0.0642	NEUTRAL	NA	5	"ZNF540,ZNF569,ZNF570,ZNF571,ZNF793"
TCGA.AG.3909.01A	19	37903471	38643428	55	0.0389	NEUTRAL	NA	11	"SIPA1L3,WDR87,ZFP30,ZNF540,ZNF569,ZNF570,ZNF571,ZNF573,ZNF607,ZNF781,ZNF793"
TCGA.AA.3509.01A	19	37916717	40365981	512	-0.0926	NEUTRAL	NA	71	"ACTN4,C19orf33,CAPN12,CATSPERG,CCER2,CLC,DLL3,DPF1,DYRK1B,ECH1,EID2,EID2B,EIF3K,FAM98C,FBL,FBXO17,FBXO27,FCGBP,GGN,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,KCNK6,LEUTX,LGALS13,LGALS14,LGALS16,LGALS4,LGALS7,LGALS7B,LRFN1,MAP4K1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,PPP1R14A,PSMD8,RASGRP4,RINL,RPS16,RYR1,SAMD4B,SARS2,SELV,SIPA1L3,SIRT2,SPINT2,SPRED3,SUPT5H,SYCN,TIMM50,WDR87,YIF1B,ZFP30,ZFP36,ZNF540,ZNF569,ZNF570,ZNF571,ZNF573,ZNF607,ZNF781,ZNF793"
TCGA.AG.A01W.01A	19	37931154	38051136	20	0.0868	NEUTRAL	NA	4	"ZNF540,ZNF569,ZNF570,ZNF793"
TCGA.AG.4009.01A	19	38023210	38074821	5	-0.006	NEUTRAL	NA	3	"ZNF540,ZNF571,ZNF793"
TCGA.AG.A01W.01A	19	38061862	38346882	65	-0.4172	NEUTRAL	NA	6	"ZFP30,ZNF540,ZNF571,ZNF573,ZNF607,ZNF781"
TCGA.AG.4009.01A	19	38077476	38262133	20	0.3455	NEUTRAL	NA	6	"ZFP30,ZNF540,ZNF571,ZNF573,ZNF607,ZNF781"
TCGA.AG.A00C.01A	19	38125875	40029969	391	0.2867	NEUTRAL	NA	58	"ACTN4,C19orf33,CAPN12,CATSPERG,CCER2,DLL3,DPF1,ECH1,EID2,EID2B,EIF3K,FAM98C,FBXO17,FBXO27,GGN,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,KCNK6,LGALS4,LGALS7,LGALS7B,LRFN1,MAP4K1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,PPP1R14A,PSMD8,RASGRP4,RINL,RPS16,RYR1,SAMD4B,SARS2,SELV,SIPA1L3,SIRT2,SPINT2,SPRED3,SUPT5H,SYCN,TIMM50,WDR87,YIF1B,ZFP30,ZFP36,ZNF573,ZNF607,ZNF781"
TCGA.AA.3872	19	38140965	59095125	4558	0.1483	NEUTRAL	NA	656	Too-Many
TCGA.DM.A1D9	19	38167905	51103382	2297	-0.3353	NEUTRAL	NA	392	Too-Many
TCGA.CK.5914.01A	19	38229341	38782433	55	0.215	NEUTRAL	NA	6	"DPF1,PPP1R14A,SIPA1L3,SPINT2,WDR87,ZNF573"
TCGA.AM.5820	19	38282157	39921478	310	0.1335	NEUTRAL	NA	47	"ACTN4,C19orf33,CAPN12,CATSPERG,CCER2,DPF1,ECH1,EIF3K,FAM98C,FBXO17,FBXO27,GGN,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,KCNK6,LGALS4,LGALS7,LGALS7B,LRFN1,MAP4K1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,PPP1R14A,PSMD8,RASGRP4,RINL,RYR1,SAMD4B,SARS2,SIPA1L3,SIRT2,SPINT2,SPRED3,SYCN,WDR87,YIF1B,ZFP36"
TCGA.G4.6299	19	38292368	53043125	2930	-0.1226	NEUTRAL	NA	455	Too-Many
TCGA.AA.A010.01A	19	38375531	38388752	9	-0.2123	NEUTRAL	NA	1	WDR87
TCGA.AG.4009.01A	19	38375531	38712945	30	-0.2013	NEUTRAL	NA	3	"DPF1,SIPA1L3,WDR87"
TCGA.AA.A01Q.01A	19	38376185	38673130	20	-0.1132	NEUTRAL	NA	2	"SIPA1L3,WDR87"
TCGA.AA.A00Q.01A	19	38376185	40513144	426	0.3446	NEUTRAL	NA	64	"ACTN4,C19orf33,CAPN12,CATSPERG,CCER2,CLC,DLL3,DPF1,DYRK1B,ECH1,EID2,EID2B,EIF3K,FAM98C,FBL,FBXO17,FBXO27,FCGBP,GGN,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,KCNK6,LEUTX,LGALS13,LGALS14,LGALS16,LGALS4,LGALS7,LGALS7B,LRFN1,MAP4K1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,PPP1R14A,PSMC4,PSMD8,RASGRP4,RINL,RPS16,RYR1,SAMD4B,SARS2,SELV,SIPA1L3,SIRT2,SPINT2,SPRED3,SUPT5H,SYCN,TIMM50,WDR87,YIF1B,ZFP36,ZNF546"
TCGA.AG.3906.01A	19	38597140	38779708	26	0.3302	NEUTRAL	NA	4	"DPF1,PPP1R14A,SIPA1L3,SPINT2"
TCGA.AG.A01W.01A	19	38660718	40127121	94	-0.0689	NEUTRAL	NA	54	"ACTN4,C19orf33,CAPN12,CATSPERG,CCER2,DLL3,DPF1,ECH1,EID2,EID2B,EIF3K,FAM98C,FBXO17,FBXO27,GGN,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,KCNK6,LGALS13,LGALS4,LGALS7,LGALS7B,LRFN1,MAP4K1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,PPP1R14A,PSMD8,RASGRP4,RINL,RPS16,RYR1,SAMD4B,SARS2,SELV,SIPA1L3,SIRT2,SPINT2,SPRED3,SUPT5H,SYCN,TIMM50,YIF1B,ZFP36"
TCGA.AA.A01Q.01A	19	38682738	38780742	23	-0.5015	NEUTRAL	NA	4	"DPF1,PPP1R14A,SIPA1L3,SPINT2"
TCGA.AF.3914.01A	19	38714706	38834616	20	0.2321	NEUTRAL	NA	7	"C19orf33,CATSPERG,DPF1,KCNK6,PPP1R14A,SPINT2,YIF1B"
TCGA.AA.A010.01A	19	38714706	38852794	35	0.2529	NEUTRAL	NA	7	"C19orf33,CATSPERG,DPF1,KCNK6,PPP1R14A,SPINT2,YIF1B"
TCGA.AG.3909.01A	19	38774278	38817812	13	0.2573	NEUTRAL	NA	4	"C19orf33,KCNK6,SPINT2,YIF1B"
TCGA.AY.A54L.01A	19	38774278	40376304	436	-0.1059	NEUTRAL	NA	58	"ACTN4,C19orf33,CAPN12,CATSPERG,CCER2,CLC,DLL3,DYRK1B,ECH1,EID2,EID2B,EIF3K,FAM98C,FBL,FBXO17,FBXO27,FCGBP,GGN,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,KCNK6,LEUTX,LGALS13,LGALS14,LGALS16,LGALS4,LGALS7,LGALS7B,LRFN1,MAP4K1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,PSMD8,RASGRP4,RINL,RPS16,RYR1,SAMD4B,SARS2,SELV,SIRT2,SPINT2,SPRED3,SUPT5H,SYCN,TIMM50,YIF1B,ZFP36"
TCGA.AG.3906.01A	19	38780742	38847063	11	-0.1964	NEUTRAL	NA	5	"C19orf33,CATSPERG,KCNK6,SPINT2,YIF1B"
TCGA.AA.A01Q.01A	19	38781096	38837053	12	0.1967	NEUTRAL	NA	5	"C19orf33,CATSPERG,KCNK6,SPINT2,YIF1B"
TCGA.CK.5914.01A	19	38794862	39005608	108	-0.1859	NEUTRAL	NA	10	"C19orf33,CATSPERG,FAM98C,GGN,KCNK6,PSMD8,RASGRP4,RYR1,SPRED3,YIF1B"
TCGA.AG.3909.01A	19	38834616	38847063	3	-0.4073	NEUTRAL	NA	1	CATSPERG
TCGA.AG.4009.01A	19	38847063	38897513	25	-0.3924	NEUTRAL	NA	5	"CATSPERG,FAM98C,GGN,PSMD8,SPRED3"
TCGA.AA.A01Q.01A	19	38882579	38934749	17	0.1267	NEUTRAL	NA	4	"FAM98C,RASGRP4,RYR1,SPRED3"
TCGA.AG.3909.01A	19	38885303	38937061	23	0.0097	NEUTRAL	NA	4	"FAM98C,RASGRP4,RYR1,SPRED3"
TCGA.AF.3914.01A	19	38903325	39055602	81	0.1269	NEUTRAL	NA	2	"RASGRP4,RYR1"
TCGA.AG.3906.01A	19	38907640	38969027	29	-0.1357	NEUTRAL	NA	2	"RASGRP4,RYR1"
TCGA.AA.A010.01A	19	38908993	38911482	3	-0.1087	NEUTRAL	NA	1	RASGRP4
TCGA.AA.A01Q.01A	19	38935184	39077913	81	-0.3692	NEUTRAL	NA	1	RYR1
TCGA.AG.3906.01A	19	38973613	38991208	12	0.2501	NEUTRAL	NA	1	RYR1
TCGA.AG.3909.01A	19	38984960	39013655	22	-0.5058	NEUTRAL	NA	1	RYR1
TCGA.AG.A016.01A	19	38989698	42754452	722	0.3218	NEUTRAL	NA	111	Too-Many
TCGA.AG.3906.01A	19	38993098	39038856	32	-0.088	NEUTRAL	NA	1	RYR1
TCGA.AA.A00N.01A	19	39006690	39055602	23	0.0807	NEUTRAL	NA	1	RYR1
TCGA.AA.A010.01A	19	39023074	39028464	6	-0.3661	NEUTRAL	NA	1	RYR1
TCGA.AG.4009.01A	19	39026575	39070981	17	-0.0561	NEUTRAL	NA	1	RYR1
TCGA.AG.3611.01A	19	39028464	39051715	6	0.2289	NEUTRAL	NA	1	RYR1
TCGA.CK.5914.01A	19	39037028	39226703	70	-0.0441	NEUTRAL	NA	5	"ACTN4,CAPN12,EIF3K,MAP4K1,RYR1"
TCGA.AA.A00N.01A	19	39057491	40029969	259	-0.4695	NEUTRAL	NA	40	"ACTN4,CAPN12,CCER2,DLL3,ECH1,EID2,EID2B,EIF3K,FBXO17,FBXO27,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,LGALS4,LGALS7,LGALS7B,LRFN1,MAP4K1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,RINL,RPS16,RYR1,SAMD4B,SARS2,SELV,SIRT2,SUPT5H,SYCN,TIMM50,ZFP36"
TCGA.AG.3909.01A	19	39058361	39219594	54	-0.157	NEUTRAL	NA	4	"ACTN4,EIF3K,MAP4K1,RYR1"
TCGA.AF.3914.01A	19	39062638	39517463	128	-0.0572	NEUTRAL	NA	18	"ACTN4,CAPN12,CCER2,ECH1,EIF3K,FBXO17,FBXO27,HNRNPL,LGALS4,LGALS7,LGALS7B,MAP4K1,MRPS12,NFKBIB,RINL,RYR1,SARS2,SIRT2"
TCGA.AG.3906.01A	19	39063790	39217546	48	0.2088	NEUTRAL	NA	4	"ACTN4,EIF3K,MAP4K1,RYR1"
TCGA.AA.A01Q.01A	19	39086060	39138349	16	0.1144	NEUTRAL	NA	3	"ACTN4,EIF3K,MAP4K1"
TCGA.AA.A010.01A	19	39086060	39196640	31	-0.0345	NEUTRAL	NA	3	"ACTN4,EIF3K,MAP4K1"
TCGA.AG.3611.01A	19	39123032	40322376	213	0.3029	NEUTRAL	NA	44	"ACTN4,CAPN12,CCER2,CLC,DLL3,DYRK1B,ECH1,EID2,EID2B,EIF3K,FBXO17,FBXO27,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,LEUTX,LGALS13,LGALS14,LGALS16,LGALS4,LGALS7,LGALS7B,LRFN1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,RINL,RPS16,SAMD4B,SARS2,SELV,SIRT2,SUPT5H,SYCN,TIMM50,ZFP36"
TCGA.A6.3808.01A	19	39125596	39200841	10	-0.385	NEUTRAL	NA	2	"ACTN4,EIF3K"
TCGA.AA.A01Q.01A	19	39205078	39217546	8	-0.2888	NEUTRAL	NA	1	ACTN4
TCGA.AG.4009.01A	19	39205078	39362220	44	-0.0831	NEUTRAL	NA	8	"ACTN4,CAPN12,ECH1,HNRNPL,LGALS4,LGALS7,LGALS7B,RINL"
TCGA.AA.A010.01A	19	39261617	39307922	17	-0.2271	NEUTRAL	NA	4	"ECH1,LGALS4,LGALS7,LGALS7B"
TCGA.CK.5914.01A	19	39282173	39362220	27	-0.3752	NEUTRAL	NA	5	"ECH1,HNRNPL,LGALS4,LGALS7B,RINL"
TCGA.AA.A01Q.01A	19	39292367	39422981	54	-0.4581	NEUTRAL	NA	9	"CCER2,ECH1,HNRNPL,LGALS4,MRPS12,NFKBIB,RINL,SARS2,SIRT2"
TCGA.AG.3906.01A	19	39297079	39329486	13	0.3335	NEUTRAL	NA	3	"ECH1,HNRNPL,LGALS4"
TCGA.AG.3906.01A	19	39360185	39788552	69	0.0852	NEUTRAL	NA	16	"CCER2,FBXO17,FBXO27,IFNL1,IFNL2,IFNL3,IFNL4,MRPS12,NCCRP1,NFKBIB,PAK4,PAPL,RINL,SARS2,SIRT2,SYCN"
TCGA.AA.A010.01A	19	39369744	39384017	10	-0.1067	NEUTRAL	NA	1	SIRT2
TCGA.CK.5914.01A	19	39369744	39866243	84	0.0082	NEUTRAL	NA	18	"CCER2,FBXO17,FBXO27,GMFG,IFNL1,IFNL2,IFNL3,IFNL4,LRFN1,MRPS12,NCCRP1,NFKBIB,PAK4,PAPL,SAMD4B,SARS2,SIRT2,SYCN"
TCGA.AA.A01Q.01A	19	39433201	39600629	17	0.0365	NEUTRAL	NA	3	"FBXO17,FBXO27,PAPL"
TCGA.AG.4009.01A	19	39433201	39804594	40	-0.1449	NEUTRAL	NA	11	"FBXO17,FBXO27,IFNL1,IFNL2,IFNL3,IFNL4,LRFN1,NCCRP1,PAK4,PAPL,SYCN"
TCGA.AG.A01Y	19	39605881	43537377	620	-0.0659	NEUTRAL	NA	108	Too-Many
TCGA.AF.3914.01A	19	39660143	39989548	91	0.0576	NEUTRAL	NA	17	"GMFG,IFNL1,IFNL2,IFNL3,IFNL4,LRFN1,MED29,NCCRP1,PAF1,PAK4,PLEKHG2,RPS16,SAMD4B,SUPT5H,SYCN,TIMM50,ZFP36"
TCGA.AA.A01Q.01A	19	39669076	39759116	8	-0.1504	NEUTRAL	NA	5	"IFNL3,IFNL4,NCCRP1,PAK4,SYCN"
TCGA.AG.3909.01A	19	39669076	39860248	28	-0.2023	NEUTRAL	NA	10	"GMFG,IFNL1,IFNL2,IFNL3,IFNL4,LRFN1,NCCRP1,PAK4,SAMD4B,SYCN"
TCGA.AA.A010.01A	19	39735390	39804594	10	-0.4834	NEUTRAL	NA	5	"IFNL1,IFNL2,IFNL3,IFNL4,LRFN1"
TCGA.AA.A01Q.01A	19	39760101	39804594	7	0.3446	NEUTRAL	NA	3	"IFNL1,IFNL2,LRFN1"
TCGA.AA.A01Q.01A	19	39805110	39866243	10	-0.1347	NEUTRAL	NA	3	"GMFG,LRFN1,SAMD4B"
TCGA.AG.3906.01A	19	39826534	40009160	67	0.1882	NEUTRAL	NA	11	"DLL3,GMFG,MED29,PAF1,PLEKHG2,RPS16,SAMD4B,SELV,SUPT5H,TIMM50,ZFP36"
TCGA.AG.3891.01A	19	39847485	39966678	50	0.1807	NEUTRAL	NA	7	"MED29,PAF1,PLEKHG2,RPS16,SAMD4B,SUPT5H,ZFP36"
TCGA.AA.A010.01A	19	39847485	39972493	55	-0.0792	NEUTRAL	NA	8	"MED29,PAF1,PLEKHG2,RPS16,SAMD4B,SUPT5H,TIMM50,ZFP36"
TCGA.CK.5914.01A	19	39867070	39923881	32	-0.3577	NEUTRAL	NA	6	"MED29,PAF1,PLEKHG2,RPS16,SAMD4B,ZFP36"
TCGA.AG.4009.01A	19	39878927	39905577	9	-0.2035	NEUTRAL	NA	4	"MED29,PAF1,PLEKHG2,ZFP36"
TCGA.AA.A01Q.01A	19	39905577	39957088	22	-0.1689	NEUTRAL	NA	3	"PLEKHG2,RPS16,SUPT5H"
TCGA.AG.3909.01A	19	39923881	39963420	16	0.0919	NEUTRAL	NA	2	"RPS16,SUPT5H"
TCGA.AM.5820	19	39931030	40253010	88	-0.493	NEUTRAL	NA	10	"CLC,DLL3,EID2,EID2B,LGALS13,LGALS14,LGALS16,SELV,SUPT5H,TIMM50"
TCGA.CK.5914.01A	19	39959344	40095214	29	-0.1622	NEUTRAL	NA	7	"DLL3,EID2,EID2B,LGALS13,SELV,SUPT5H,TIMM50"
TCGA.AG.4009.01A	19	39976117	39989548	6	0.0539	NEUTRAL	NA	1	TIMM50
TCGA.AG.3891.01A	19	40005846	40199796	15	-0.0024	NEUTRAL	NA	6	"EID2,EID2B,LGALS13,LGALS14,LGALS16,SELV"
TCGA.AA.A01Q.01A	19	40005846	40316406	22	0.3544	NEUTRAL	NA	9	"CLC,DYRK1B,EID2,EID2B,LEUTX,LGALS13,LGALS14,LGALS16,SELV"
TCGA.AF.3914.01A	19	40005846	40317290	21	-0.0826	NEUTRAL	NA	9	"CLC,DYRK1B,EID2,EID2B,LEUTX,LGALS13,LGALS14,LGALS16,SELV"
TCGA.AG.3906.01A	19	40022905	40228496	17	-0.2171	NEUTRAL	NA	6	"CLC,EID2,EID2B,LGALS13,LGALS14,LGALS16"
TCGA.AA.A010.01A	19	40022905	40317290	23	0.0859	NEUTRAL	NA	8	"CLC,DYRK1B,EID2,EID2B,LEUTX,LGALS13,LGALS14,LGALS16"
TCGA.AG.A00C.01A	19	40093135	40276299	16	-0.3515	NEUTRAL	NA	5	"CLC,LEUTX,LGALS13,LGALS14,LGALS16"
TCGA.AG.4009.01A	19	40093135	40317290	18	0.2367	NEUTRAL	NA	6	"CLC,DYRK1B,LEUTX,LGALS13,LGALS14,LGALS16"
TCGA.AA.A01D.01A	19	40095214	49464742	1350	0.0307	NEUTRAL	NA	265	Too-Many
TCGA.AG.A01W.01A	19	40208773	40225163	6	0.3696	NEUTRAL	NA	1	CLC
TCGA.AG.3891.01A	19	40221968	41812302	302	0.2957	NEUTRAL	NA	39	"ADCK4,AKT2,AXL,BLVRB,C19orf47,C19orf54,CLC,CNTD2,CYP2A13,CYP2A6,CYP2A7,CYP2B6,CYP2F1,CYP2S1,DYRK1B,EGLN2,FBL,FCGBP,HIPK4,HNRNPUL1,ITPKC,LEUTX,LTBP4,MAP3K10,MIA,NUMBL,PLD3,PRX,PSMC4,RAB4B,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TTC9B,ZNF546,ZNF780A,ZNF780B"
TCGA.AG.A01W.01A	19	40231988	40305481	11	-0.2032	NEUTRAL	NA	1	LEUTX
TCGA.CK.5914.01A	19	40275233	40521110	61	0.0357	NEUTRAL	NA	6	"DYRK1B,FBL,FCGBP,LEUTX,PSMC4,ZNF546"
TCGA.AG.A01W.01A	19	40305944	40309580	4	0.2364	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	40314084	40444611	26	-0.4749	NEUTRAL	NA	3	"DYRK1B,FBL,FCGBP"
TCGA.AG.A00C.01A	19	40316406	40419547	35	0.3218	NEUTRAL	NA	3	"DYRK1B,FBL,FCGBP"
TCGA.AF.3914.01A	19	40325119	40365981	12	-0.0347	NEUTRAL	NA	2	"FBL,FCGBP"
TCGA.AG.3611.01A	19	40325119	40423929	19	-0.0035	NEUTRAL	NA	2	"FBL,FCGBP"
TCGA.AG.4009.01A	19	40327144	40383551	18	-0.0526	NEUTRAL	NA	2	"FBL,FCGBP"
TCGA.AG.3906.01A	19	40328324	40421055	26	0.1497	NEUTRAL	NA	2	"FBL,FCGBP"
TCGA.AA.A00N.01A	19	40330819	40440397	33	-0.4377	NEUTRAL	NA	2	"FBL,FCGBP"
TCGA.AA.A01Q.01A	19	40330819	40440397	22	0.0559	NEUTRAL	NA	2	"FBL,FCGBP"
TCGA.AA.A010.01A	19	40336839	40419547	23	-0.0247	NEUTRAL	NA	2	"FBL,FCGBP"
TCGA.AA.A02E.01A	19	40354064	50063154	1599	-0.1235	NEUTRAL	NA	292	Too-Many
TCGA.AZ.4684.01A	19	40383551	40504175	25	-0.1301	NEUTRAL	NA	3	"FCGBP,PSMC4,ZNF546"
TCGA.AA.3509.01A	19	40383551	43257434	568	-0.0476	NEUTRAL	NA	76	"ADCK4,AKT2,ARHGEF1,ATP1A3,ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,BLVRB,C19orf47,C19orf54,CCDC97,CD79A,CEACAM1,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CEACAM8,CIC,CNFN,CNTD2,CXCL17,CYP2A13,CYP2A6,CYP2A7,CYP2B6,CYP2F1,CYP2S1,DEDD2,DMRTC2,EGLN2,ERF,ERICH4,EXOSC5,FCGBP,GRIK5,GSK3A,HIPK4,HNRNPUL1,ITPKC,LIPE,LTBP4,LYPD4,MAP3K10,MEGF8,MIA,NUMBL,PAFAH1B3,PLD3,POU2F2,PRR19,PRX,PSG3,PSG8,PSMC4,RAB4B,RABAC1,RPS19,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TGFB1,TMEM145,TMEM91,TTC9B,ZNF526,ZNF546,ZNF574,ZNF780A,ZNF780B"
TCGA.AF.3914.01A	19	40386399	40711791	45	0.1008	NEUTRAL	NA	6	"FCGBP,MAP3K10,PSMC4,ZNF546,ZNF780A,ZNF780B"
TCGA.AY.A54L.01A	19	40402087	43699350	608	-0.1008	NEUTRAL	NA	83	"ADCK4,AKT2,ARHGEF1,ATP1A3,ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,BLVRB,C19orf47,C19orf54,CCDC97,CD79A,CEACAM1,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CEACAM8,CIC,CNFN,CNTD2,CXCL17,CYP2A13,CYP2A6,CYP2A7,CYP2B6,CYP2F1,CYP2S1,DEDD2,DMRTC2,EGLN2,ERF,ERICH4,EXOSC5,FCGBP,GRIK5,GSK3A,HIPK4,HNRNPUL1,ITPKC,LIPE,LTBP4,LYPD4,MAP3K10,MEGF8,MIA,NUMBL,PAFAH1B3,PLD3,POU2F2,PRR19,PRX,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSMC4,RAB4B,RABAC1,RPS19,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TGFB1,TMEM145,TMEM91,TTC9B,ZNF526,ZNF546,ZNF574,ZNF780A,ZNF780B"
TCGA.AG.4009.01A	19	40411607	40590578	30	0.2324	NEUTRAL	NA	5	"FCGBP,PSMC4,ZNF546,ZNF780A,ZNF780B"
TCGA.DM.A28M.01A	19	40419547	44351089	712	-0.1778	NEUTRAL	NA	103	Too-Many
TCGA.AG.A00C.01A	19	40421055	40882465	63	0.0109	NEUTRAL	NA	11	"AKT2,C19orf47,CNTD2,FCGBP,MAP3K10,PLD3,PSMC4,TTC9B,ZNF546,ZNF780A,ZNF780B"
TCGA.AA.3862.01A	19	40421055	45540671	886	0.2949	NEUTRAL	NA	138	Too-Many
TCGA.AG.3906.01A	19	40423929	40590578	27	-0.2277	NEUTRAL	NA	5	"FCGBP,PSMC4,ZNF546,ZNF780A,ZNF780B"
TCGA.AG.3611.01A	19	40430238	41270885	151	0.2815	NEUTRAL	NA	24	"ADCK4,AKT2,BLVRB,C19orf47,C19orf54,CNTD2,FCGBP,HIPK4,ITPKC,LTBP4,MAP3K10,NUMBL,PLD3,PRX,PSMC4,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TTC9B,ZNF546,ZNF780A,ZNF780B"
TCGA.AA.3861.01A	19	40430238	59082320	3469	0.2819	NEUTRAL	NA	591	Too-Many
TCGA.AG.3909.01A	19	40440397	40519560	13	-0.0412	NEUTRAL	NA	3	"FCGBP,PSMC4,ZNF546"
TCGA.AG.A01W.01A	19	40461391	40673040	31	-0.2077	NEUTRAL	NA	4	"PSMC4,ZNF546,ZNF780A,ZNF780B"
TCGA.AA.A01Q.01A	19	40486495	40588986	16	0.3132	NEUTRAL	NA	4	"PSMC4,ZNF546,ZNF780A,ZNF780B"
TCGA.AG.3909.01A	19	40520515	40580386	8	0.3294	NEUTRAL	NA	3	"ZNF546,ZNF780A,ZNF780B"
TCGA.AA.A010.01A	19	40541832	40595147	9	-0.0646	NEUTRAL	NA	2	"ZNF780A,ZNF780B"
TCGA.AZ.4684.01A	19	40553232	43382332	546	-0.2027	NEUTRAL	NA	74	"ADCK4,AKT2,ARHGEF1,ATP1A3,ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,BLVRB,C19orf47,C19orf54,CCDC97,CD79A,CEACAM1,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CEACAM8,CIC,CNFN,CNTD2,CXCL17,CYP2A13,CYP2A6,CYP2A7,CYP2B6,CYP2F1,CYP2S1,DEDD2,DMRTC2,EGLN2,ERF,ERICH4,EXOSC5,GRIK5,GSK3A,HIPK4,HNRNPUL1,ITPKC,LIPE,LTBP4,LYPD4,MAP3K10,MEGF8,MIA,NUMBL,PAFAH1B3,PLD3,POU2F2,PRR19,PRX,PSG1,PSG3,PSG8,RAB4B,RABAC1,RPS19,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TGFB1,TMEM145,TMEM91,TTC9B,ZNF526,ZNF574,ZNF780A,ZNF780B"
TCGA.CA.6719	19	40553965	59095125	4081	-0.0814	NEUTRAL	NA	588	Too-Many
TCGA.AA.A00Z.01A	19	40580386	58772209	179	-0.2208	NEUTRAL	NA	569	Too-Many
TCGA.AG.3909.01A	19	40587685	40590578	3	-0.0336	NEUTRAL	NA	1	ZNF780A
TCGA.CK.5914.01A	19	40590578	41313641	177	-0.1236	NEUTRAL	NA	23	"ADCK4,AKT2,BLVRB,C19orf47,C19orf54,CNTD2,EGLN2,HIPK4,ITPKC,LTBP4,MAP3K10,MIA,NUMBL,PLD3,PRX,RAB4B,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TTC9B,ZNF780A"
TCGA.AA.A00N.01A	19	40595147	41243551	152	-0.4227	NEUTRAL	NA	18	"ADCK4,AKT2,BLVRB,C19orf47,CNTD2,HIPK4,ITPKC,LTBP4,MAP3K10,NUMBL,PLD3,PRX,SERTAD1,SERTAD3,SHKBP1,SPTBN4,TTC9B,ZNF780A"
TCGA.QL.A97D	19	40626282	41316354	100	-0.1773	NEUTRAL	NA	22	"ADCK4,AKT2,BLVRB,C19orf47,C19orf54,CNTD2,EGLN2,HIPK4,ITPKC,LTBP4,MAP3K10,MIA,NUMBL,PLD3,PRX,RAB4B,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TTC9B"
TCGA.AG.4009.01A	19	40697898	40730343	13	-0.4782	NEUTRAL	NA	3	"CNTD2,MAP3K10,TTC9B"
TCGA.AA.A00Q.01A	19	40697898	43032403	463	0.3584	NEUTRAL	NA	68	"ADCK4,AKT2,ARHGEF1,ATP1A3,ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,BLVRB,C19orf47,C19orf54,CCDC97,CD79A,CEACAM1,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CIC,CNFN,CNTD2,CXCL17,CYP2A13,CYP2A6,CYP2A7,CYP2B6,CYP2F1,CYP2S1,DEDD2,DMRTC2,EGLN2,ERF,ERICH4,EXOSC5,GRIK5,GSK3A,HIPK4,HNRNPUL1,ITPKC,LIPE,LTBP4,LYPD4,MAP3K10,MEGF8,MIA,NUMBL,PAFAH1B3,PLD3,POU2F2,PRR19,PRX,RAB4B,RABAC1,RPS19,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TGFB1,TMEM145,TMEM91,TTC9B,ZNF526,ZNF574"
TCGA.AG.A01W.01A	19	40721283	40728424	7	-0.2059	NEUTRAL	NA	3	"CNTD2,MAP3K10,TTC9B"
TCGA.AF.3914.01A	19	40723870	41012136	52	0.0367	NEUTRAL	NA	11	"AKT2,BLVRB,C19orf47,CNTD2,HIPK4,PLD3,PRX,SERTAD1,SERTAD3,SPTBN4,TTC9B"
TCGA.AG.3906.01A	19	40730343	40928722	34	0.0307	NEUTRAL	NA	7	"AKT2,C19orf47,CNTD2,HIPK4,PLD3,PRX,SERTAD1"
TCGA.AG.A01W.01A	19	40743059	43913280	580	-0.2325	NEUTRAL	NA	78	"ADCK4,AKT2,ARHGEF1,ATP1A3,ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,BLVRB,C19orf47,C19orf54,CCDC97,CD177,CD79A,CEACAM1,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CEACAM8,CIC,CNFN,CXCL17,CYP2A13,CYP2A6,CYP2A7,CYP2B6,CYP2F1,CYP2S1,DEDD2,DMRTC2,EGLN2,ERF,ERICH4,EXOSC5,GRIK5,GSK3A,HIPK4,HNRNPUL1,ITPKC,LIPE,LTBP4,LYPD4,MEGF8,MIA,NUMBL,PAFAH1B3,PLD3,POU2F2,PRR19,PRX,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,RAB4B,RABAC1,RPS19,SERTAD1,SERTAD3,SHKBP1,SNRPA,SPTBN4,TEX101,TGFB1,TMEM145,TMEM91,ZNF526,ZNF574"
TCGA.AA.A01Q.01A	19	40827781	40875778	9	-0.0332	NEUTRAL	NA	2	"C19orf47,PLD3"
TCGA.AA.A01Q.01A	19	40877538	40964010	17	-0.4347	NEUTRAL	NA	6	"BLVRB,HIPK4,PLD3,PRX,SERTAD1,SERTAD3"
TCGA.AG.A00C.01A	19	40883656	41239018	93	0.3382	NEUTRAL	NA	12	"ADCK4,BLVRB,HIPK4,ITPKC,LTBP4,NUMBL,PLD3,PRX,SERTAD1,SERTAD3,SHKBP1,SPTBN4"
TCGA.AG.4009.01A	19	40928722	41003349	11	-0.189	NEUTRAL	NA	4	"BLVRB,SERTAD1,SERTAD3,SPTBN4"
TCGA.AA.A01Q.01A	19	40971465	41012136	12	0.2102	NEUTRAL	NA	2	"BLVRB,SPTBN4"
TCGA.AG.3906.01A	19	40993557	41018533	11	0.1554	NEUTRAL	NA	1	SPTBN4
TCGA.AA.A01Q.01A	19	41018533	41096654	32	-0.4624	NEUTRAL	NA	2	"SHKBP1,SPTBN4"
TCGA.AM.5820	19	41084862	44286828	513	0.157	NEUTRAL	NA	84	"ADCK4,ARHGEF1,ATP1A3,ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,C19orf54,CADM4,CCDC97,CD177,CD79A,CEACAM1,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CEACAM8,CIC,CNFN,CXCL17,CYP2A13,CYP2A6,CYP2A7,CYP2B6,CYP2F1,CYP2S1,DEDD2,DMRTC2,EGLN2,ERF,ERICH4,ETHE1,EXOSC5,GRIK5,GSK3A,HNRNPUL1,IRGC,IRGQ,ITPKC,KCNN4,LIPE,LTBP4,LYPD3,LYPD4,MEGF8,MIA,NUMBL,PAFAH1B3,PHLDB3,PINLYP,PLAUR,POU2F2,PRR19,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,RAB4B,RABAC1,RPS19,SHKBP1,SMG9,SNRPA,SRRM5,TEX101,TGFB1,TMEM145,TMEM91,XRCC1,ZNF428,ZNF526,ZNF574,ZNF575,ZNF576"
TCGA.AG.3909.01A	19	41089251	41173961	31	-0.0276	NEUTRAL	NA	3	"LTBP4,NUMBL,SHKBP1"
TCGA.AG.4009.01A	19	41112100	41132913	16	-0.2776	NEUTRAL	NA	1	LTBP4
TCGA.AA.3522	19	41125176	59095125	4018	-0.404	NEUTRAL	NA	573	Too-Many
TCGA.AG.4009.01A	19	41135253	41179207	5	0.2885	NEUTRAL	NA	2	"LTBP4,NUMBL"
TCGA.AA.A010.01A	19	41173352	41197888	10	0.0531	NEUTRAL	NA	2	"ADCK4,NUMBL"
TCGA.AA.A01Q.01A	19	41175765	41235070	20	-0.4111	NEUTRAL	NA	3	"ADCK4,ITPKC,NUMBL"
TCGA.AG.4009.01A	19	41183088	41197888	5	-0.3438	NEUTRAL	NA	2	"ADCK4,NUMBL"
TCGA.AG.4009.01A	19	41224139	41243551	5	0.0574	NEUTRAL	NA	1	ITPKC
TCGA.AF.3914.01A	19	41231198	42354319	195	0.0745	NEUTRAL	NA	31	"ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,C19orf54,CCDC97,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CYP2A13,CYP2A6,CYP2A7,CYP2B6,CYP2F1,CYP2S1,DMRTC2,EGLN2,ERICH4,EXOSC5,HNRNPUL1,ITPKC,LYPD4,MIA,RAB4B,SNRPA,TGFB1,TMEM91"
TCGA.AA.A01Q.01A	19	41239018	41281410	15	0.1836	NEUTRAL	NA	4	"C19orf54,ITPKC,MIA,SNRPA"
TCGA.AG.A00C.01A	19	41243551	41250452	5	-0.4319	NEUTRAL	NA	2	"C19orf54,ITPKC"
TCGA.AA.A010.01A	19	41245225	41270885	12	0.1187	NEUTRAL	NA	3	"C19orf54,ITPKC,SNRPA"
TCGA.AY.6196	19	41296045	59095125	3932	-0.1258	NEUTRAL	NA	566	Too-Many
TCGA.AG.4009.01A	19	41306466	41313641	5	-0.3855	NEUTRAL	NA	1	EGLN2
TCGA.QL.A97D	19	41318305	59095125	3973	0.1534	NEUTRAL	NA	564	Too-Many
TCGA.AG.A00C.01A	19	41349654	41387886	18	-0.3707	NEUTRAL	NA	2	"CYP2A6,CYP2A7"
TCGA.AG.3906.01A	19	41349654	41510230	21	-0.0747	NEUTRAL	NA	3	"CYP2A6,CYP2A7,CYP2B6"
TCGA.AU.3779	19	41435735	59095125	3950	-0.4167	NEUTRAL	NA	562	Too-Many
TCGA.AG.3611.01A	19	41497183	41522533	8	-0.0524	NEUTRAL	NA	1	CYP2B6
TCGA.AG.A00C.01A	19	41497183	41600815	17	-0.0709	NEUTRAL	NA	2	"CYP2A13,CYP2B6"
TCGA.AA.A010.01A	19	41497183	41822238	68	0.086	NEUTRAL	NA	7	"AXL,CCDC97,CYP2A13,CYP2B6,CYP2F1,CYP2S1,HNRNPUL1"
TCGA.AG.3906.01A	19	41512782	41763351	47	0.3667	NEUTRAL	NA	5	"AXL,CYP2A13,CYP2B6,CYP2F1,CYP2S1"
TCGA.AA.A01Q.01A	19	41595903	41627314	10	0.0327	NEUTRAL	NA	2	"CYP2A13,CYP2F1"
TCGA.CK.5914.01A	19	41595903	41727746	28	-0.0495	NEUTRAL	NA	4	"AXL,CYP2A13,CYP2F1,CYP2S1"
TCGA.AG.3909.01A	19	41596281	41736822	26	-0.4645	NEUTRAL	NA	4	"AXL,CYP2A13,CYP2F1,CYP2S1"
TCGA.AA.A00N.01A	19	41596281	41770392	42	-0.3122	NEUTRAL	NA	5	"AXL,CYP2A13,CYP2F1,CYP2S1,HNRNPUL1"
TCGA.AG.4009.01A	19	41597595	41622065	6	-0.4353	NEUTRAL	NA	2	"CYP2A13,CYP2F1"
TCGA.AG.A00C.01A	19	41601653	41916515	68	0.2552	NEUTRAL	NA	11	"AXL,B9D2,BCKDHA,CCDC97,CYP2A13,CYP2F1,CYP2S1,EXOSC5,HNRNPUL1,TGFB1,TMEM91"
TCGA.AG.3611.01A	19	41622065	42402550	146	-0.0338	NEUTRAL	NA	24	"ARHGEF1,ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,CCDC97,CD79A,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CYP2F1,CYP2S1,DMRTC2,ERICH4,EXOSC5,HNRNPUL1,LYPD4,RPS19,TGFB1,TMEM91"
TCGA.AG.4009.01A	19	41626222	41800191	40	0.2228	NEUTRAL	NA	4	"AXL,CYP2F1,CYP2S1,HNRNPUL1"
TCGA.AA.A01Q.01A	19	41699123	42355602	126	-0.0161	NEUTRAL	NA	20	"ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,CCDC97,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,CYP2S1,DMRTC2,ERICH4,EXOSC5,HNRNPUL1,LYPD4,TGFB1,TMEM91"
TCGA.AG.3909.01A	19	41743811	41765416	13	0.2685	NEUTRAL	NA	1	AXL
TCGA.CK.5914.01A	19	41763351	41944093	51	0.0227	NEUTRAL	NA	10	"ATP5SL,AXL,B3GNT8,B9D2,BCKDHA,CCDC97,EXOSC5,HNRNPUL1,TGFB1,TMEM91"
TCGA.AG.3906.01A	19	41765416	41800191	9	-0.0276	NEUTRAL	NA	2	"AXL,HNRNPUL1"
TCGA.AG.3909.01A	19	41774101	41903034	34	-0.4384	NEUTRAL	NA	6	"B9D2,CCDC97,EXOSC5,HNRNPUL1,TGFB1,TMEM91"
TCGA.AA.A00N.01A	19	41782023	41836935	16	-0.1106	NEUTRAL	NA	3	"CCDC97,HNRNPUL1,TGFB1"
TCGA.AG.3906.01A	19	41807403	41812302	5	0.3488	NEUTRAL	NA	1	HNRNPUL1
TCGA.AG.4009.01A	19	41837994	41869279	7	-0.4762	NEUTRAL	NA	2	"B9D2,TGFB1"
TCGA.AA.A010.01A	19	41858548	41898723	12	0.0144	NEUTRAL	NA	4	"B9D2,EXOSC5,TGFB1,TMEM91"
TCGA.AG.3891.01A	19	41858548	41949861	28	0.2952	NEUTRAL	NA	8	"ATP5SL,B3GNT8,B9D2,BCKDHA,ERICH4,EXOSC5,TGFB1,TMEM91"
TCGA.AG.3906.01A	19	41884163	42407831	94	-0.1166	NEUTRAL	NA	17	"ARHGEF1,ATP5SL,B3GNT8,BCKDHA,CD79A,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,DMRTC2,ERICH4,EXOSC5,LYPD4,RPS19,TMEM91"
TCGA.AA.A00N.01A	19	41903685	41938085	10	0.0552	NEUTRAL	NA	3	"ATP5SL,B3GNT8,BCKDHA"
TCGA.AG.3909.01A	19	41903685	42259477	43	0.3412	NEUTRAL	NA	9	"ATP5SL,B3GNT8,BCKDHA,CEACAM21,CEACAM4,CEACAM5,CEACAM6,CEACAM7,ERICH4"
TCGA.AG.A00C.01A	19	41919903	42125967	21	-0.0332	NEUTRAL	NA	6	"ATP5SL,B3GNT8,BCKDHA,CEACAM21,CEACAM4,ERICH4"
TCGA.AA.A02K.01A	19	41945695	42219559	27	-0.348	NEUTRAL	NA	6	"ATP5SL,CEACAM21,CEACAM4,CEACAM5,CEACAM7,ERICH4"
TCGA.NH.A8F7	19	42036792	59095125	3844	0.3058	NEUTRAL	NA	547	Too-Many
TCGA.A6.4105	19	42063674	59095125	3852	0.269	NEUTRAL	NA	547	Too-Many
TCGA.AG.3891.01A	19	42082557	42408128	72	-0.0285	NEUTRAL	NA	11	"ARHGEF1,CD79A,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,DMRTC2,LYPD4,RPS19"
TCGA.AG.A00C.01A	19	42126512	42212584	10	-0.3901	NEUTRAL	NA	3	"CEACAM4,CEACAM5,CEACAM7"
TCGA.AG.4009.01A	19	42181294	42270043	18	0.067	NEUTRAL	NA	3	"CEACAM5,CEACAM6,CEACAM7"
TCGA.AG.A00C.01A	19	42213663	42315146	21	-0.0473	NEUTRAL	NA	3	"CEACAM3,CEACAM5,CEACAM6"
TCGA.AA.A02K.01A	19	42221338	47885199	965	-0.0445	NEUTRAL	NA	159	Too-Many
TCGA.AG.3909.01A	19	42260536	42492059	60	-0.4567	NEUTRAL	NA	9	"ARHGEF1,ATP1A3,CD79A,CEACAM3,CEACAM6,DMRTC2,LYPD4,RABAC1,RPS19"
TCGA.AG.4009.01A	19	42300550	42355602	17	0.3703	NEUTRAL	NA	3	"CEACAM3,DMRTC2,LYPD4"
TCGA.CK.5914.01A	19	42315146	42509837	60	-0.0695	NEUTRAL	NA	9	"ARHGEF1,ATP1A3,CD79A,CEACAM3,DMRTC2,GRIK5,LYPD4,RABAC1,RPS19"
TCGA.AA.A00N.01A	19	42315146	42510745	62	-0.42	NEUTRAL	NA	9	"ARHGEF1,ATP1A3,CD79A,CEACAM3,DMRTC2,GRIK5,LYPD4,RABAC1,RPS19"
TCGA.AG.A00C.01A	19	42341175	42937076	142	0.3131	NEUTRAL	NA	22	"ARHGEF1,ATP1A3,CD79A,CIC,CNFN,CXCL17,DEDD2,DMRTC2,ERF,GRIK5,GSK3A,LIPE,LYPD4,MEGF8,PAFAH1B3,POU2F2,PRR19,RABAC1,RPS19,TMEM145,ZNF526,ZNF574"
TCGA.AF.5654	19	42354943	59095125	3768	0.0159	NEUTRAL	NA	540	Too-Many
TCGA.AA.A010.01A	19	42355602	42482707	44	-0.1938	NEUTRAL	NA	6	"ARHGEF1,ATP1A3,CD79A,DMRTC2,RABAC1,RPS19"
TCGA.AA.A01Q.01A	19	42364784	42398233	18	-0.4847	NEUTRAL	NA	3	"ARHGEF1,CD79A,RPS19"
TCGA.AG.4009.01A	19	42364784	42398233	16	-0.3154	NEUTRAL	NA	3	"ARHGEF1,CD79A,RPS19"
TCGA.AF.3914.01A	19	42398233	42752607	64	-0.1519	NEUTRAL	NA	10	"ARHGEF1,ATP1A3,DEDD2,ERF,GRIK5,GSK3A,POU2F2,RABAC1,ZNF526,ZNF574"
TCGA.AA.A01Q.01A	19	42399395	42474315	21	-0.1085	NEUTRAL	NA	3	"ARHGEF1,ATP1A3,RABAC1"
TCGA.AG.4009.01A	19	42399395	42569358	37	0.3184	NEUTRAL	NA	4	"ARHGEF1,ATP1A3,GRIK5,RABAC1"
TCGA.AG.3611.01A	19	42406010	42410559	9	-0.4634	NEUTRAL	NA	1	ARHGEF1
TCGA.AA.A01F.01A	19	42407831	42759052	62	0.0229	NEUTRAL	NA	10	"ARHGEF1,ATP1A3,DEDD2,ERF,GRIK5,GSK3A,POU2F2,RABAC1,ZNF526,ZNF574"
TCGA.AG.3906.01A	19	42408128	42734906	43	0.2547	NEUTRAL	NA	9	"ARHGEF1,ATP1A3,DEDD2,GRIK5,GSK3A,POU2F2,RABAC1,ZNF526,ZNF574"
TCGA.AG.3891.01A	19	42409078	42754452	53	0.2956	NEUTRAL	NA	10	"ARHGEF1,ATP1A3,DEDD2,ERF,GRIK5,GSK3A,POU2F2,RABAC1,ZNF526,ZNF574"
TCGA.DM.A0XD	19	42428766	59095125	3752	-0.0086	NEUTRAL	NA	536	Too-Many
TCGA.AG.3611.01A	19	42460946	50461499	1308	0.1278	NEUTRAL	NA	258	Too-Many
TCGA.AA.A01Q.01A	19	42506288	42569782	15	0.1074	NEUTRAL	NA	1	GRIK5
TCGA.AA.A010.01A	19	42525402	42720790	25	0.0883	NEUTRAL	NA	4	"DEDD2,GRIK5,POU2F2,ZNF574"
TCGA.AG.3909.01A	19	42557727	42569358	6	0.3195	NEUTRAL	NA	1	GRIK5
TCGA.CK.5914.01A	19	42560762	42713815	17	0.096	NEUTRAL	NA	4	"DEDD2,GRIK5,POU2F2,ZNF574"
TCGA.AA.A00N.01A	19	42560762	42937076	101	-0.417	NEUTRAL	NA	15	"CIC,CNFN,CXCL17,DEDD2,ERF,GRIK5,GSK3A,LIPE,MEGF8,PAFAH1B3,POU2F2,PRR19,TMEM145,ZNF526,ZNF574"
TCGA.AG.4009.01A	19	42582712	42738473	18	-0.1083	NEUTRAL	NA	5	"DEDD2,GSK3A,POU2F2,ZNF526,ZNF574"
TCGA.AA.A01Q.01A	19	42582712	42788809	26	-0.3986	NEUTRAL	NA	7	"CIC,DEDD2,ERF,GSK3A,POU2F2,ZNF526,ZNF574"
TCGA.CK.5914.01A	19	42719236	42932989	82	-0.1618	NEUTRAL	NA	12	"CIC,CNFN,CXCL17,DEDD2,ERF,GSK3A,LIPE,MEGF8,PAFAH1B3,PRR19,TMEM145,ZNF526"
TCGA.AA.A01F.01A	19	42801183	42866191	28	0.0536	NEUTRAL	NA	4	"MEGF8,PAFAH1B3,PRR19,TMEM145"
TCGA.AG.3891.01A	19	42804072	44030630	158	0.1696	NEUTRAL	NA	24	"CD177,CEACAM1,CEACAM8,CNFN,CXCL17,ETHE1,LIPE,LYPD3,MEGF8,PAFAH1B3,PHLDB3,PRR19,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TEX101,TMEM145"
TCGA.AG.A016.01A	19	42813710	45411763	358	0.314	NEUTRAL	NA	67	"APOE,BCAM,BCL3,CADM4,CBLC,CD177,CEACAM1,CEACAM16,CEACAM19,CEACAM20,CEACAM8,CNFN,CXCL17,ETHE1,IGSF23,IRGC,IRGQ,KCNN4,LIPE,LYPD3,LYPD5,MEGF8,PHLDB3,PINLYP,PLAUR,PRR19,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,PVR,PVRL2,SMG9,SRRM5,TEX101,TMEM145,TOMM40,XRCC1,ZNF112,ZNF155,ZNF180,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF428,ZNF45,ZNF575,ZNF576"
TCGA.AG.3906.01A	19	42824462	43098852	61	0.1481	NEUTRAL	NA	7	"CEACAM1,CEACAM8,CNFN,CXCL17,LIPE,MEGF8,TMEM145"
TCGA.AA.A010.01A	19	42827718	43859785	125	0.3653	NEUTRAL	NA	18	"CD177,CEACAM1,CEACAM8,CNFN,CXCL17,LIPE,MEGF8,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TMEM145"
TCGA.DY.A1DF	19	42835691	43537377	83	0.3532	NEUTRAL	NA	12	"CEACAM1,CEACAM8,CNFN,CXCL17,LIPE,MEGF8,PSG1,PSG11,PSG3,PSG6,PSG7,PSG8"
TCGA.AF.3914.01A	19	42837710	44012870	150	-0.0694	NEUTRAL	NA	21	"CD177,CEACAM1,CEACAM8,CNFN,CXCL17,ETHE1,LIPE,LYPD3,MEGF8,PHLDB3,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TEX101"
TCGA.AA.A01Q.01A	19	42840911	42866191	20	-0.252	NEUTRAL	NA	1	MEGF8
TCGA.AA.A01F.01A	19	42866488	42875454	7	-0.3594	NEUTRAL	NA	1	MEGF8
TCGA.AA.A01Q.01A	19	42872966	42937076	19	-0.3995	NEUTRAL	NA	4	"CNFN,CXCL17,LIPE,MEGF8"
TCGA.AA.A01F.01A	19	42879629	47207379	561	0.0746	NEUTRAL	NA	123	Too-Many
TCGA.AG.A00C.01A	19	42937882	43032403	11	-0.2241	NEUTRAL	NA	2	"CEACAM1,CXCL17"
TCGA.AA.A00N.01A	19	42937882	43991146	94	0.3737	NEUTRAL	NA	17	"CD177,CEACAM1,CEACAM8,CXCL17,LYPD3,PHLDB3,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TEX101"
TCGA.AA.A01Q.01A	19	42937882	44001269	82	0.1936	NEUTRAL	NA	17	"CD177,CEACAM1,CEACAM8,CXCL17,LYPD3,PHLDB3,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TEX101"
TCGA.CM.4750.01A	19	43023050	43585296	48	0.3348	NEUTRAL	NA	9	"CEACAM1,CEACAM8,PSG1,PSG11,PSG2,PSG3,PSG6,PSG7,PSG8"
TCGA.AA.3712	19	43032865	59095125	3732	-0.0444	NEUTRAL	NA	518	Too-Many
TCGA.AG.3725	19	43032865	59095125	3722	-0.2395	NEUTRAL	NA	518	Too-Many
TCGA.AG.A00C.01A	19	43087343	43097656	4	0.3209	NEUTRAL	NA	1	CEACAM8
TCGA.AG.4009.01A	19	43087343	43098852	5	0.1312	NEUTRAL	NA	1	CEACAM8
TCGA.AG.A00C.01A	19	43098852	44008071	85	-0.1201	NEUTRAL	NA	15	"CD177,CEACAM8,LYPD3,PHLDB3,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TEX101"
TCGA.AG.3906.01A	19	43228079	43860093	60	-0.1649	NEUTRAL	NA	11	"CD177,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9"
TCGA.AA.3877	19	43467854	59095125	3682	0.0482	NEUTRAL	NA	512	Too-Many
TCGA.AA.3509.01A	19	43530445	44341158	125	-0.0279	NEUTRAL	NA	24	"CADM4,CD177,ETHE1,IRGC,IRGQ,KCNN4,LYPD3,LYPD5,PHLDB3,PINLYP,PLAUR,PSG11,PSG2,PSG4,PSG5,PSG9,SMG9,SRRM5,TEX101,XRCC1,ZNF283,ZNF428,ZNF575,ZNF576"
TCGA.AG.A026	19	43556842	57562242	3269	0.3124	NEUTRAL	NA	448	Too-Many
TCGA.AG.3591	19	43556842	59095125	3671	-0.249	NEUTRAL	NA	511	Too-Many
TCGA.AZ.4684.01A	19	43568632	44341158	124	-0.1919	NEUTRAL	NA	23	"CADM4,CD177,ETHE1,IRGC,IRGQ,KCNN4,LYPD3,LYPD5,PHLDB3,PINLYP,PLAUR,PSG2,PSG4,PSG5,PSG9,SMG9,SRRM5,TEX101,XRCC1,ZNF283,ZNF428,ZNF575,ZNF576"
TCGA.AA.A02F.01A	19	43570633	58698275	2159	-0.1235	NEUTRAL	NA	492	Too-Many
TCGA.AG.4009.01A	19	43575813	43771939	20	0.1403	NEUTRAL	NA	4	"PSG2,PSG4,PSG5,PSG9"
TCGA.AG.A01Y	19	43607204	43691317	18	-0.2695	NEUTRAL	NA	1	PSG5
TCGA.AF.A56L	19	43607204	59095125	3656	0.2379	NEUTRAL	NA	510	Too-Many
TCGA.CM.4750.01A	19	43674171	59082320	3047	0.0046	NEUTRAL	NA	510	Too-Many
TCGA.DM.A1HA	19	43696974	59095125	3645	-0.0115	NEUTRAL	NA	509	Too-Many
TCGA.AG.A01Y	19	43856631	59095125	3609	-0.078	NEUTRAL	NA	507	Too-Many
TCGA.AG.3906.01A	19	43864400	44030630	29	0.1218	NEUTRAL	NA	5	"CD177,ETHE1,LYPD3,PHLDB3,TEX101"
TCGA.AY.A54L.01A	19	43864400	55333105	2379	-0.1003	NEUTRAL	NA	375	Too-Many
TCGA.CK.5914.01A	19	43910577	44654513	136	0.1837	NEUTRAL	NA	29	"CADM4,ETHE1,IRGC,IRGQ,KCNN4,LYPD3,LYPD5,PHLDB3,PINLYP,PLAUR,SMG9,SRRM5,TEX101,XRCC1,ZNF155,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF230,ZNF234,ZNF283,ZNF284,ZNF404,ZNF428,ZNF45,ZNF575,ZNF576"
TCGA.AG.A01W.01A	19	43918937	43920695	3	0.0743	NEUTRAL	NA	1	TEX101
TCGA.AA.A00Q.01A	19	43919986	44012870	17	0.0332	NEUTRAL	NA	4	"ETHE1,LYPD3,PHLDB3,TEX101"
TCGA.AG.3909.01A	19	43919986	44079488	38	-0.0741	NEUTRAL	NA	6	"ETHE1,LYPD3,PHLDB3,TEX101,XRCC1,ZNF575"
TCGA.AA.A01Q.01A	19	44001868	44156339	43	-0.3678	NEUTRAL	NA	11	"CADM4,ETHE1,IRGQ,PHLDB3,PINLYP,PLAUR,SRRM5,XRCC1,ZNF428,ZNF575,ZNF576"
TCGA.AG.4009.01A	19	44012870	44058786	14	-0.4569	NEUTRAL	NA	3	"ETHE1,XRCC1,ZNF575"
TCGA.AG.A01W.01A	19	44013514	44080796	25	-0.078	NEUTRAL	NA	3	"ETHE1,XRCC1,ZNF575"
TCGA.G4.6322	19	44043447	59095125	3596	-0.0142	NEUTRAL	NA	501	Too-Many
TCGA.AF.3914.01A	19	44056902	45186638	165	-0.1465	NEUTRAL	NA	36	"CADM4,CEACAM19,CEACAM20,IGSF23,IRGC,IRGQ,KCNN4,LYPD5,PINLYP,PLAUR,PVR,SMG9,SRRM5,XRCC1,ZNF112,ZNF155,ZNF180,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF428,ZNF45,ZNF576"
TCGA.AG.A00C.01A	19	44057526	44160579	22	0.2931	NEUTRAL	NA	8	"CADM4,IRGQ,PINLYP,PLAUR,SRRM5,XRCC1,ZNF428,ZNF576"
TCGA.AG.3891.01A	19	44058786	45016008	136	0.1595	NEUTRAL	NA	33	"CADM4,CEACAM20,IRGC,IRGQ,KCNN4,LYPD5,PINLYP,PLAUR,SMG9,SRRM5,XRCC1,ZNF112,ZNF155,ZNF180,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF428,ZNF45,ZNF576"
TCGA.AG.4009.01A	19	44065014	44098943	5	0.238	NEUTRAL	NA	3	"IRGQ,PINLYP,XRCC1"
TCGA.AA.A010.01A	19	44079020	44111797	7	0.1605	NEUTRAL	NA	5	"IRGQ,PINLYP,XRCC1,ZNF428,ZNF576"
TCGA.AG.4009.01A	19	44101206	44129193	8	-0.0024	NEUTRAL	NA	4	"CADM4,SRRM5,ZNF428,ZNF576"
TCGA.AG.A01W.01A	19	44108664	44351998	21	-0.2769	NEUTRAL	NA	9	"CADM4,IRGC,KCNN4,LYPD5,PLAUR,SMG9,SRRM5,ZNF283,ZNF428"
TCGA.AG.3909.01A	19	44130012	44131769	4	-0.0426	NEUTRAL	NA	1	CADM4
TCGA.AG.4009.01A	19	44130012	44153004	5	-0.4714	NEUTRAL	NA	2	"CADM4,PLAUR"
TCGA.AG.4009.01A	19	44156339	44248877	16	0.2431	NEUTRAL	NA	3	"IRGC,PLAUR,SMG9"
TCGA.AA.A01Q.01A	19	44159543	44235696	8	0.3549	NEUTRAL	NA	3	"IRGC,PLAUR,SMG9"
TCGA.AG.A00C.01A	19	44169441	45204646	137	-0.0892	NEUTRAL	NA	30	"CEACAM16,CEACAM19,CEACAM20,IGSF23,IRGC,KCNN4,LYPD5,PLAUR,PVR,SMG9,ZNF112,ZNF155,ZNF180,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF45"
TCGA.F4.6460	19	44172024	57421149	3082	-0.3942	NEUTRAL	NA	431	Too-Many
TCGA.AG.3909.01A	19	44222734	44254726	12	-0.2309	NEUTRAL	NA	2	"IRGC,SMG9"
TCGA.AA.A00N.01A	19	44222734	44301711	21	-0.4224	NEUTRAL	NA	4	"IRGC,KCNN4,LYPD5,SMG9"
TCGA.EI.6506	19	44234703	59095125	3525	0.2621	NEUTRAL	NA	492	Too-Many
TCGA.AA.A01Q.01A	19	44236993	44284846	17	-0.4109	NEUTRAL	NA	2	"KCNN4,SMG9"
TCGA.AA.A00Q.01A	19	44271648	44303808	11	0.0456	NEUTRAL	NA	2	"KCNN4,LYPD5"
TCGA.AA.A010.01A	19	44278292	44284846	3	0.119	NEUTRAL	NA	1	KCNN4
TCGA.AM.5820	19	44294848	44899545	191	-0.1116	NEUTRAL	NA	19	"LYPD5,ZNF112,ZNF155,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF45"
TCGA.AG.3909.01A	19	44301711	44303808	4	-0.134	NEUTRAL	NA	1	LYPD5
TCGA.AA.A01Q.01A	19	44301711	44936345	71	0.3237	NEUTRAL	NA	20	"LYPD5,ZNF112,ZNF155,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF45"
TCGA.AG.3906.01A	19	44302620	45175145	106	-0.1457	NEUTRAL	NA	25	"CEACAM19,CEACAM20,IGSF23,LYPD5,PVR,ZNF112,ZNF155,ZNF180,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF45"
TCGA.AG.3909.01A	19	44339622	44946936	77	0.3422	NEUTRAL	NA	19	"ZNF112,ZNF155,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF45"
TCGA.AG.4009.01A	19	44341158	44674141	46	0.3389	NEUTRAL	NA	13	"ZNF155,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF230,ZNF234,ZNF283,ZNF284,ZNF404,ZNF45"
TCGA.AG.A01W.01A	19	44355382	44427241	15	0.2378	NEUTRAL	NA	2	"ZNF404,ZNF45"
TCGA.AA.A010.01A	19	44384110	44426230	5	0.044	NEUTRAL	NA	2	"ZNF404,ZNF45"
TCGA.AA.3509.01A	19	44417518	53050713	1862	-0.0774	NEUTRAL	NA	290	Too-Many
TCGA.AG.A01W.01A	19	44450964	44518356	14	-0.4656	NEUTRAL	NA	3	"ZNF155,ZNF221,ZNF230"
TCGA.AZ.4684.01A	19	44469055	44946936	67	-0.1151	NEUTRAL	NA	16	"ZNF112,ZNF155,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF284,ZNF285"
TCGA.DM.A28M.01A	19	44469055	56903050	2646	-0.149	NEUTRAL	NA	413	Too-Many
TCGA.AA.3851	19	44490041	59095125	3455	-0.009	NEUTRAL	NA	485	Too-Many
TCGA.AG.A01W.01A	19	44539347	44605546	32	-0.1012	NEUTRAL	NA	3	"ZNF223,ZNF224,ZNF284"
TCGA.AG.A01W.01A	19	44615707	44663018	21	-0.4738	NEUTRAL	NA	2	"ZNF225,ZNF234"
TCGA.AG.A01W.01A	19	44664317	45021466	47	0.1708	NEUTRAL	NA	10	"CEACAM20,ZNF112,ZNF180,ZNF226,ZNF227,ZNF229,ZNF233,ZNF234,ZNF235,ZNF285"
TCGA.AG.4009.01A	19	44676202	44739673	9	0.0857	NEUTRAL	NA	2	"ZNF226,ZNF227"
TCGA.AA.A010.01A	19	44732548	44807473	12	0.3319	NEUTRAL	NA	3	"ZNF227,ZNF233,ZNF235"
TCGA.AA.A00D.01A	19	44739673	52728926	1284	0.3767	NEUTRAL	NA	271	Too-Many
TCGA.AG.4009.01A	19	44768420	44946936	21	0.3199	NEUTRAL	NA	5	"ZNF112,ZNF229,ZNF233,ZNF235,ZNF285"
TCGA.AA.A010.01A	19	44831534	45033408	31	-0.2352	NEUTRAL	NA	5	"CEACAM20,ZNF112,ZNF180,ZNF229,ZNF285"
TCGA.AM.5820	19	44899819	48297227	531	0.2046	NEUTRAL	NA	96	"AP2S1,APOC1,APOC2,APOC4,APOE,ARHGAP35,BBC3,BCAM,BCL3,BLOC1S3,C5AR1,C5AR2,CALM3,CBLC,CCDC61,CCDC8,CCDC9,CD3EAP,CEACAM16,CEACAM19,CEACAM20,CKM,CLASRP,CLPTM1,DACT3,DHX34,DMPK,DMWD,EHD2,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FKRP,FOSB,FOXA3,GEMIN7,GIPR,GLTSCR1,GLTSCR2,GNG8,GPR4,HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,IGSF23,INAFM1,IRF2BP1,KLC3,KPTN,MARK4,MEIS3,MYPOP,NANOS2,NAPA,NKPD1,NOVA2,NPAS1,OPA3,PGLYRP1,PNMAL1,PNMAL2,PPM1N,PPP1R13L,PPP1R37,PPP5C,PPP5D1,PRKD2,PTGIR,PVR,PVRL2,QPCTL,RELB,RSPH6A,RTN2,SAE1,SEPW1,SIX5,SLC1A5,SLC8A2,SNRPD2,STRN4,SYMPK,TMEM160,TOMM40,TRAPPC6A,VASP,ZC3H4,ZNF180,ZNF229,ZNF285,ZNF296,ZNF541"
TCGA.CK.5914.01A	19	44946690	45016008	12	-0.2345	NEUTRAL	NA	3	"CEACAM20,ZNF180,ZNF229"
TCGA.AG.4009.01A	19	44980602	45001314	5	-0.252	NEUTRAL	NA	1	ZNF180
TCGA.AA.A00Q.01A	19	44981652	48253388	468	0.3703	NEUTRAL	NA	93	"AP2S1,APOC1,APOC2,APOC4,APOE,ARHGAP35,BBC3,BCAM,BCL3,BLOC1S3,C5AR1,C5AR2,CALM3,CBLC,CCDC61,CCDC8,CCDC9,CD3EAP,CEACAM16,CEACAM19,CEACAM20,CKM,CLASRP,CLPTM1,DACT3,DHX34,DMPK,DMWD,EHD2,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FKRP,FOSB,FOXA3,GEMIN7,GIPR,GLTSCR1,GLTSCR2,GNG8,GPR4,HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,IGSF23,INAFM1,IRF2BP1,KLC3,KPTN,MARK4,MEIS3,MYPOP,NANOS2,NAPA,NKPD1,NOVA2,NPAS1,OPA3,PGLYRP1,PNMAL1,PNMAL2,PPM1N,PPP1R13L,PPP1R37,PPP5C,PPP5D1,PRKD2,PTGIR,PVR,PVRL2,QPCTL,RELB,RSPH6A,RTN2,SAE1,SIX5,SLC1A5,SLC8A2,SNRPD2,STRN4,SYMPK,TMEM160,TOMM40,TRAPPC6A,VASP,ZC3H4,ZNF180,ZNF296,ZNF541"
TCGA.AZ.4684.01A	19	44983453	54178910	1870	-0.2018	NEUTRAL	NA	298	Too-Many
TCGA.AA.A01Q.01A	19	45001314	45322574	53	0.1597	NEUTRAL	NA	9	"BCAM,BCL3,CBLC,CEACAM16,CEACAM19,CEACAM20,IGSF23,PVR,ZNF180"
TCGA.AG.3909.01A	19	45004200	45016008	5	-0.0612	NEUTRAL	NA	2	"CEACAM20,ZNF180"
TCGA.AG.3891.01A	19	45016870	45033408	8	-0.2099	NEUTRAL	NA	1	CEACAM20
TCGA.AG.A01W.01A	19	45022659	45757855	141	-0.1113	NEUTRAL	NA	25	"APOC1,APOC2,APOC4,APOE,BCAM,BCL3,BLOC1S3,CBLC,CEACAM16,CEACAM19,CEACAM20,CLASRP,CLPTM1,EXOC3L2,GEMIN7,IGSF23,MARK4,NKPD1,PPP1R37,PVR,PVRL2,RELB,TOMM40,TRAPPC6A,ZNF296"
TCGA.AG.3906.01A	19	45175819	45389128	41	0.3308	NEUTRAL	NA	6	"BCAM,BCL3,CBLC,CEACAM16,CEACAM19,PVRL2"
TCGA.AG.3909.01A	19	45202425	45297399	21	0.019	NEUTRAL	NA	3	"BCL3,CBLC,CEACAM16"
TCGA.AF.3914.01A	19	45202425	45303582	22	-0.4995	NEUTRAL	NA	3	"BCL3,CBLC,CEACAM16"
TCGA.AA.A00N.01A	19	45202425	45322281	31	-0.245	NEUTRAL	NA	4	"BCAM,BCL3,CBLC,CEACAM16"
TCGA.AG.A00C.01A	19	45206610	46525966	279	0.2992	NEUTRAL	NA	50	"APOC1,APOC2,APOC4,APOE,BCAM,BCL3,BLOC1S3,CBLC,CCDC61,CD3EAP,CEACAM16,CKM,CLASRP,CLPTM1,DMPK,DMWD,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FOSB,FOXA3,GEMIN7,GIPR,GPR4,IRF2BP1,KLC3,MARK4,MYPOP,NANOS2,NKPD1,NOVA2,OPA3,PGLYRP1,PPM1N,PPP1R13L,PPP1R37,PVRL2,QPCTL,RELB,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,TOMM40,TRAPPC6A,VASP,ZNF296"
TCGA.AA.A010.01A	19	45281151	45368481	19	0.3104	NEUTRAL	NA	3	"BCAM,CBLC,PVRL2"
TCGA.AG.4009.01A	19	45297399	45322574	10	-0.0938	NEUTRAL	NA	2	"BCAM,CBLC"
TCGA.AG.3909.01A	19	45303582	45851851	116	-0.3718	NEUTRAL	NA	21	"APOC1,APOC2,APOC4,APOE,BCAM,BLOC1S3,CBLC,CKM,CLASRP,CLPTM1,EXOC3L2,GEMIN7,KLC3,MARK4,NKPD1,PPP1R37,PVRL2,RELB,TOMM40,TRAPPC6A,ZNF296"
TCGA.CK.5914.01A	19	45314455	46544142	314	-0.0681	NEUTRAL	NA	48	"APOC1,APOC2,APOC4,APOE,BCAM,BLOC1S3,CCDC61,CD3EAP,CKM,CLASRP,CLPTM1,DMPK,DMWD,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FOSB,FOXA3,GEMIN7,GIPR,GPR4,IGFL4,IRF2BP1,KLC3,MARK4,MYPOP,NANOS2,NKPD1,NOVA2,OPA3,PGLYRP1,PPM1N,PPP1R13L,PPP1R37,PVRL2,QPCTL,RELB,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,TOMM40,TRAPPC6A,VASP,ZNF296"
TCGA.AF.3914.01A	19	45321759	45389128	11	0.0356	NEUTRAL	NA	2	"BCAM,PVRL2"
TCGA.AA.A01Q.01A	19	45323911	45389128	7	-0.2452	NEUTRAL	NA	2	"BCAM,PVRL2"
TCGA.AA.A01Q.01A	19	45409795	46506631	253	-0.3821	NEUTRAL	NA	43	"APOC1,APOC2,APOC4,APOE,BLOC1S3,CCDC61,CD3EAP,CKM,CLASRP,CLPTM1,DMPK,DMWD,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FOSB,FOXA3,GEMIN7,GIPR,GPR4,IRF2BP1,KLC3,MARK4,MYPOP,NANOS2,NKPD1,NOVA2,OPA3,PPM1N,PPP1R13L,PPP1R37,QPCTL,RELB,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,TRAPPC6A,VASP,ZNF296"
TCGA.AG.4009.01A	19	45411763	45572277	41	0.1127	NEUTRAL	NA	7	"APOC1,APOC2,APOC4,APOE,CLASRP,CLPTM1,RELB"
TCGA.AG.A016.01A	19	45418136	45452370	8	-0.0963	NEUTRAL	NA	3	"APOC1,APOC2,APOC4"
TCGA.AF.3914.01A	19	45419410	46525966	262	-0.471	NEUTRAL	NA	43	"APOC1,APOC2,APOC4,BLOC1S3,CCDC61,CD3EAP,CKM,CLASRP,CLPTM1,DMPK,DMWD,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FOSB,FOXA3,GEMIN7,GIPR,GPR4,IRF2BP1,KLC3,MARK4,MYPOP,NANOS2,NKPD1,NOVA2,OPA3,PGLYRP1,PPM1N,PPP1R13L,PPP1R37,QPCTL,RELB,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,TRAPPC6A,VASP,ZNF296"
TCGA.AA.A010.01A	19	45445475	45476314	9	0.3587	NEUTRAL	NA	3	"APOC2,APOC4,CLPTM1"
TCGA.AG.A016.01A	19	45528536	45563590	12	0.0844	NEUTRAL	NA	2	"CLASRP,RELB"
TCGA.AA.A010.01A	19	45532099	45721428	44	-0.4416	NEUTRAL	NA	9	"BLOC1S3,CLASRP,EXOC3L2,GEMIN7,NKPD1,PPP1R37,RELB,TRAPPC6A,ZNF296"
TCGA.AG.3906.01A	19	45535741	46464239	199	0.3501	NEUTRAL	NA	37	"BLOC1S3,CD3EAP,CKM,CLASRP,DMPK,DMWD,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FOSB,FOXA3,GEMIN7,GIPR,GPR4,IRF2BP1,KLC3,MARK4,MYPOP,NANOS2,NKPD1,NOVA2,OPA3,PPM1N,PPP1R13L,PPP1R37,QPCTL,RELB,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,TRAPPC6A,VASP,ZNF296"
TCGA.AA.3862.01A	19	45543424	59082320	2624	-0.0849	NEUTRAL	NA	453	Too-Many
TCGA.AA.A024.01A	19	45574858	51206757	1136	0.1086	NEUTRAL	NA	192	Too-Many
TCGA.AG.A016.01A	19	45593322	45800902	21	0.227	NEUTRAL	NA	7	"BLOC1S3,EXOC3L2,GEMIN7,MARK4,NKPD1,PPP1R37,TRAPPC6A"
TCGA.AG.4009.01A	19	45593322	45992587	79	-0.0842	NEUTRAL	NA	15	"BLOC1S3,CD3EAP,CKM,ERCC1,ERCC2,EXOC3L2,FOSB,GEMIN7,KLC3,MARK4,NKPD1,PPP1R13L,PPP1R37,RTN2,TRAPPC6A"
TCGA.DY.A1DF	19	45734432	46367264	71	0.2931	NEUTRAL	NA	24	"CD3EAP,CKM,DMPK,DMWD,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FOSB,GIPR,GPR4,KLC3,MARK4,OPA3,PPM1N,PPP1R13L,QPCTL,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,VASP"
TCGA.AG.A01W.01A	19	45778021	45788440	8	-0.4395	NEUTRAL	NA	1	MARK4
TCGA.AA.A010.01A	19	45783634	45975772	62	0.0536	NEUTRAL	NA	8	"CD3EAP,CKM,ERCC1,ERCC2,FOSB,KLC3,MARK4,PPP1R13L"
TCGA.AG.A01W.01A	19	45790824	45805948	8	0.2767	NEUTRAL	NA	1	MARK4
TCGA.AA.3967.01A	19	45801363	45814970	7	-0.1443	NEUTRAL	NA	2	"CKM,MARK4"
TCGA.AG.A01W.01A	19	45807251	45827094	17	-0.4934	NEUTRAL	NA	2	"CKM,MARK4"
TCGA.AG.A01W.01A	19	45865235	45897761	15	-0.0305	NEUTRAL	NA	2	"ERCC2,PPP1R13L"
TCGA.AG.3909.01A	19	45868047	46299169	103	-0.498	NEUTRAL	NA	19	"CD3EAP,DMPK,DMWD,EML2,ERCC1,ERCC2,FBXO46,FOSB,GIPR,GPR4,OPA3,PPM1N,PPP1R13L,QPCTL,RSPH6A,RTN2,SIX5,SNRPD2,VASP"
TCGA.AG.A016.01A	19	45871846	50099077	763	0.3367	NEUTRAL	NA	145	Too-Many
TCGA.F4.6461	19	45966056	59095125	3105	-0.019	NEUTRAL	NA	438	Too-Many
TCGA.AG.A01W.01A	19	45984361	46640897	128	-0.3696	NEUTRAL	NA	24	"CCDC61,DMPK,DMWD,EML2,FBXO46,FOXA3,GIPR,GPR4,IGFL3,IGFL4,IRF2BP1,MYPOP,NANOS2,NOVA2,OPA3,PGLYRP1,PPM1N,QPCTL,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,VASP"
TCGA.AA.A010.01A	19	46020930	46274195	56	-0.0477	NEUTRAL	NA	10	"DMPK,EML2,FBXO46,GIPR,GPR4,OPA3,QPCTL,SIX5,SNRPD2,VASP"
TCGA.EF.5830	19	46027751	47488890	219	-0.0377	NEUTRAL	NA	40	"AP2S1,ARHGAP35,CALM3,CCDC61,CCDC8,DACT3,DMPK,DMWD,EML2,FBXO46,FKRP,FOXA3,GIPR,GNG8,GPR4,HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,IRF2BP1,MYPOP,NANOS2,NOVA2,OPA3,PGLYRP1,PNMAL1,PNMAL2,PPP5C,PPP5D1,PRKD2,PTGIR,QPCTL,RSPH6A,SIX5,SLC1A5,SNRPD2,STRN4,SYMPK,VASP"
TCGA.EI.7002	19	46098884	59095125	3102	-0.511	NEUTRAL	NA	433	Too-Many
TCGA.A6.5667	19	46158472	59095125	3097	-0.5001	NEUTRAL	NA	431	Too-Many
TCGA.AG.4009.01A	19	46201758	46206110	3	-0.0829	NEUTRAL	NA	1	QPCTL
TCGA.AG.3909.01A	19	46303653	46357368	26	0.1823	NEUTRAL	NA	2	"RSPH6A,SYMPK"
TCGA.AG.4009.01A	19	46303653	46375284	26	0.0577	NEUTRAL	NA	3	"FOXA3,RSPH6A,SYMPK"
TCGA.AA.A010.01A	19	46317765	46330720	13	-0.0546	NEUTRAL	NA	2	"RSPH6A,SYMPK"
TCGA.AA.A00N.01A	19	46324593	46623499	49	-0.0506	NEUTRAL	NA	10	"CCDC61,FOXA3,IGFL3,IGFL4,IRF2BP1,MYPOP,NANOS2,NOVA2,PGLYRP1,SYMPK"
TCGA.AG.3891.01A	19	46333262	46891589	65	0.0978	NEUTRAL	NA	14	"CCDC61,FOXA3,HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,IRF2BP1,MYPOP,NANOS2,NOVA2,PGLYRP1,PPP5C,SYMPK"
TCGA.AA.A010.01A	19	46347277	46375284	7	-0.2077	NEUTRAL	NA	2	"FOXA3,SYMPK"
TCGA.AG.4009.01A	19	46376164	46525966	18	-0.4589	NEUTRAL	NA	7	"CCDC61,FOXA3,IRF2BP1,MYPOP,NANOS2,NOVA2,PGLYRP1"
TCGA.AG.3909.01A	19	46393889	46509800	9	0.2767	NEUTRAL	NA	4	"CCDC61,MYPOP,NANOS2,NOVA2"
TCGA.AG.3906.01A	19	46506219	46800249	25	-0.242	NEUTRAL	NA	6	"CCDC61,IGFL1,IGFL2,IGFL3,IGFL4,PGLYRP1"
TCGA.AG.3909.01A	19	46511361	46543076	9	-0.4244	NEUTRAL	NA	3	"CCDC61,IGFL4,PGLYRP1"
TCGA.AA.A01Q.01A	19	46520220	46850307	32	0.2183	NEUTRAL	NA	8	"CCDC61,HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,PGLYRP1,PPP5C"
TCGA.AG.4009.01A	19	46543076	46663611	8	0.1812	NEUTRAL	NA	3	"IGFL2,IGFL3,IGFL4"
TCGA.AG.A00C.01A	19	46543076	46893262	36	-0.0806	NEUTRAL	NA	6	"HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,PPP5C"
TCGA.AF.3914.01A	19	46543076	47535847	100	-0.152	NEUTRAL	NA	21	"AP2S1,ARHGAP35,CALM3,CCDC8,DACT3,FKRP,GNG8,HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,NPAS1,PNMAL1,PNMAL2,PPP5C,PPP5D1,PRKD2,PTGIR,SLC1A5,STRN4"
TCGA.AF.2689	19	46590474	59095125	3038	-0.074	NEUTRAL	NA	414	Too-Many
TCGA.AG.A01W.01A	19	46641715	47099660	76	-0.0328	NEUTRAL	NA	8	"CCDC8,HIF3A,IGFL1,IGFL2,PNMAL1,PNMAL2,PPP5C,PPP5D1"
TCGA.AA.A00N.01A	19	46800249	48484087	258	-0.4049	NEUTRAL	NA	39	"AP2S1,ARHGAP35,BBC3,BSPH1,C5AR1,C5AR2,CALM3,CCDC8,CCDC9,CRX,DACT3,DHX34,EHD2,FKRP,GLTSCR1,GLTSCR2,GNG8,HIF3A,INAFM1,KPTN,MEIS3,NAPA,NPAS1,PNMAL1,PNMAL2,PPP5C,PPP5D1,PRKD2,PTGIR,SAE1,SEPW1,SLC1A5,SLC8A2,STRN4,SULT2A1,TMEM160,TPRX1,ZC3H4,ZNF541"
TCGA.CK.5914.01A	19	46806844	48511873	256	-0.0529	NEUTRAL	NA	40	"AP2S1,ARHGAP35,BBC3,BSPH1,C5AR1,C5AR2,CALM3,CCDC8,CCDC9,CRX,DACT3,DHX34,EHD2,ELSPBP1,FKRP,GLTSCR1,GLTSCR2,GNG8,HIF3A,INAFM1,KPTN,MEIS3,NAPA,NPAS1,PNMAL1,PNMAL2,PPP5C,PPP5D1,PRKD2,PTGIR,SAE1,SEPW1,SLC1A5,SLC8A2,STRN4,SULT2A1,TMEM160,TPRX1,ZC3H4,ZNF541"
TCGA.AG.3906.01A	19	46807113	48869066	263	0.1546	NEUTRAL	NA	50	"AP2S1,ARHGAP35,BBC3,BSPH1,C19orf68,C5AR1,C5AR2,CABP5,CALM3,CARD8,CCDC114,CCDC8,CCDC9,CRX,DACT3,DHX34,EHD2,ELSPBP1,EMP3,FKRP,GLTSCR1,GLTSCR2,GNG8,HIF3A,INAFM1,KPTN,LIG1,MEIS3,NAPA,NPAS1,PLA2G4C,PNMAL1,PNMAL2,PPP5C,PPP5D1,PRKD2,PTGIR,SAE1,SEPW1,SLC1A5,SLC8A2,STRN4,SULT2A1,SYNGR4,TMEM143,TMEM160,TPRX1,ZC3H4,ZNF114,ZNF541"
TCGA.AA.A01Q.01A	19	46856965	47219381	37	-0.2754	NEUTRAL	NA	10	"CALM3,CCDC8,DACT3,GNG8,PNMAL1,PNMAL2,PPP5C,PPP5D1,PRKD2,PTGIR"
TCGA.AG.3909.01A	19	46879672	48305765	176	-0.4022	NEUTRAL	NA	35	"AP2S1,ARHGAP35,BBC3,C5AR1,C5AR2,CALM3,CCDC8,CCDC9,DACT3,DHX34,EHD2,FKRP,GLTSCR1,GLTSCR2,GNG8,INAFM1,KPTN,MEIS3,NAPA,NPAS1,PNMAL1,PNMAL2,PPP5C,PPP5D1,PRKD2,PTGIR,SAE1,SEPW1,SLC1A5,SLC8A2,STRN4,TMEM160,TPRX1,ZC3H4,ZNF541"
TCGA.AG.4009.01A	19	46914400	47112064	8	-0.2969	NEUTRAL	NA	5	"CALM3,CCDC8,PNMAL1,PNMAL2,PPP5D1"
TCGA.AG.A00C.01A	19	46914400	48385309	166	0.246	NEUTRAL	NA	36	"AP2S1,ARHGAP35,BBC3,C5AR1,C5AR2,CALM3,CCDC8,CCDC9,CRX,DACT3,DHX34,EHD2,FKRP,GLTSCR1,GLTSCR2,GNG8,INAFM1,KPTN,MEIS3,NAPA,NPAS1,PNMAL1,PNMAL2,PPP5D1,PRKD2,PTGIR,SAE1,SEPW1,SLC1A5,SLC8A2,STRN4,SULT2A1,TMEM160,TPRX1,ZC3H4,ZNF541"
TCGA.CK.4948.01B	19	46971714	55301485	1787	-0.4426	NEUTRAL	NA	274	Too-Many
TCGA.AG.A01W.01A	19	47099969	47450884	63	-0.3665	NEUTRAL	NA	11	"AP2S1,ARHGAP35,CALM3,DACT3,FKRP,GNG8,PPP5D1,PRKD2,PTGIR,SLC1A5,STRN4"
TCGA.AG.4009.01A	19	47124488	47223822	17	0.3155	NEUTRAL	NA	5	"DACT3,GNG8,PRKD2,PTGIR,STRN4"
TCGA.AG.3891.01A	19	47124488	49218470	325	0.3483	NEUTRAL	NA	59	"AP2S1,ARHGAP35,BBC3,BSPH1,C19orf68,C5AR1,C5AR2,CA11,CABP5,CARD8,CCDC114,CCDC9,CRX,CYTH2,DACT3,DBP,DHX34,EHD2,ELSPBP1,EMP3,FAM83E,FKRP,FUT2,GLTSCR1,GLTSCR2,GNG8,GRIN2D,GRWD1,INAFM1,KCNJ14,KDELR1,KPTN,LIG1,LMTK3,MAMSTR,MEIS3,NAPA,NPAS1,NTN5,PLA2G4C,PRKD2,PTGIR,RPL18,SAE1,SEPW1,SLC1A5,SLC8A2,SPACA4,SPHK2,STRN4,SULT2A1,SULT2B1,SYNGR4,TMEM143,TMEM160,TPRX1,ZC3H4,ZNF114,ZNF541"
TCGA.AA.3841	19	47172472	50898016	633	-0.2739	NEUTRAL	NA	131	Too-Many
TCGA.AA.A01Q.01A	19	47258681	47909662	71	-0.1272	NEUTRAL	NA	15	"AP2S1,ARHGAP35,BBC3,C5AR1,C5AR2,CCDC9,DHX34,FKRP,INAFM1,MEIS3,NPAS1,SAE1,SLC1A5,TMEM160,ZC3H4"
TCGA.AG.4009.01A	19	47278717	47440484	12	0.1676	NEUTRAL	NA	3	"AP2S1,ARHGAP35,SLC1A5"
TCGA.AA.A01F.01A	19	47341664	47870216	42	0.0494	NEUTRAL	NA	12	"AP2S1,ARHGAP35,BBC3,C5AR1,C5AR2,CCDC9,DHX34,INAFM1,NPAS1,SAE1,TMEM160,ZC3H4"
TCGA.AG.4009.01A	19	47491208	47584722	18	-0.4569	NEUTRAL	NA	4	"ARHGAP35,NPAS1,TMEM160,ZC3H4"
TCGA.AG.A01W.01A	19	47493030	47513650	9	-0.2741	NEUTRAL	NA	1	ARHGAP35
TCGA.AG.A01W.01A	19	47516262	47530991	6	0.3548	NEUTRAL	NA	1	NPAS1
TCGA.AG.A01W.01A	19	47531962	47717895	51	-0.4974	NEUTRAL	NA	4	"NPAS1,SAE1,TMEM160,ZC3H4"
TCGA.AG.4009.01A	19	47585409	48260171	93	0.1388	NEUTRAL	NA	16	"BBC3,C5AR1,C5AR2,CCDC9,DHX34,EHD2,GLTSCR1,GLTSCR2,INAFM1,KPTN,MEIS3,NAPA,SAE1,SLC8A2,ZC3H4,ZNF541"
TCGA.AF.3914.01A	19	47587552	48955955	217	-0.1229	NEUTRAL	NA	35	"BBC3,BSPH1,C19orf68,C5AR1,C5AR2,CABP5,CARD8,CCDC114,CCDC9,CRX,DHX34,EHD2,ELSPBP1,EMP3,GLTSCR1,GLTSCR2,GRIN2D,GRWD1,INAFM1,KDELR1,KPTN,LIG1,MEIS3,NAPA,PLA2G4C,SAE1,SEPW1,SLC8A2,SULT2A1,SYNGR4,TMEM143,TPRX1,ZC3H4,ZNF114,ZNF541"
TCGA.AG.3731	19	47658319	48935652	300	-0.3826	NEUTRAL	NA	33	"BBC3,BSPH1,C19orf68,C5AR1,C5AR2,CABP5,CARD8,CCDC114,CCDC9,CRX,DHX34,EHD2,ELSPBP1,EMP3,GLTSCR1,GLTSCR2,GRIN2D,INAFM1,KDELR1,KPTN,LIG1,MEIS3,NAPA,PLA2G4C,SAE1,SEPW1,SLC8A2,SULT2A1,SYNGR4,TMEM143,TPRX1,ZNF114,ZNF541"
TCGA.AG.A01W.01A	19	47723007	48278483	46	0.0921	NEUTRAL	NA	14	"BBC3,C5AR1,C5AR2,CCDC9,DHX34,EHD2,GLTSCR1,GLTSCR2,INAFM1,KPTN,MEIS3,NAPA,SLC8A2,ZNF541"
TCGA.AA.3549	19	47879873	59095125	2864	0.0706	NEUTRAL	NA	386	Too-Many
TCGA.AA.A01F.01A	19	47909662	50211933	513	0.0748	NEUTRAL	NA	95	"ADM5,ALDH16A1,BAX,BCAT2,BCL2L12,BSPH1,C19orf68,C19orf73,CA11,CABP5,CARD8,CCDC114,CCDC155,CD37,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,CPT1C,CRX,CYTH2,DBP,DHDH,DKKL1,EHD2,ELSPBP1,EMP3,FAM83E,FCGRT,FGF21,FLT3LG,FTL,FUT1,FUT2,GFY,GLTSCR1,GLTSCR2,GRIN2D,GRWD1,GYS1,HRC,HSD17B14,IRF3,IZUMO1,KCNA7,KCNJ14,KDELR1,KPTN,LHB,LIG1,LIN7B,LMTK3,MAMSTR,MEIS3,NAPA,NOSIP,NTF4,NTN5,NUCB1,PIH1D1,PLA2G4C,PLEKHA4,PPFIA3,PPP1R15A,PRMT1,PRR12,PRRG2,PTH2,RASIP1,RCN3,RPL13A,RPL18,RPS11,RRAS,RUVBL2,SCAF1,SEPW1,SLC17A7,SLC6A16,SLC8A2,SNRNP70,SPACA4,SPHK2,SULT2A1,SULT2B1,SYNGR4,TEAD2,TMEM143,TPRX1,TRPM4,TULP2,ZNF114,ZNF541"
TCGA.AA.A02K.01A	19	47917988	47991499	20	0.2222	NEUTRAL	NA	4	"KPTN,MEIS3,NAPA,SLC8A2"
TCGA.AA.A01Q.01A	19	47933298	47992892	11	-0.0886	NEUTRAL	NA	3	"KPTN,NAPA,SLC8A2"
TCGA.AA.A010.01A	19	47951046	47980911	6	-0.236	NEUTRAL	NA	2	"KPTN,SLC8A2"
TCGA.AA.A00J.01A	19	47951046	59082320	1803	0.3563	NEUTRAL	NA	384	Too-Many
TCGA.AG.A015.01A	19	47960150	55239095	1362	0.2388	NEUTRAL	NA	248	Too-Many
TCGA.AA.A010.01A	19	47983061	48048303	28	0.2469	NEUTRAL	NA	3	"KPTN,NAPA,ZNF541"
TCGA.AA.A02K.01A	19	47992893	48003839	7	-0.4888	NEUTRAL	NA	1	NAPA
TCGA.AA.A02K.01A	19	48006624	49956543	512	-0.0054	NEUTRAL	NA	77	"ALDH16A1,BAX,BCAT2,BSPH1,C19orf68,C19orf73,CA11,CABP5,CARD8,CCDC114,CCDC155,CD37,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,CRX,CYTH2,DBP,DHDH,DKKL1,EHD2,ELSPBP1,EMP3,FAM83E,FGF21,FTL,FUT1,FUT2,GFY,GLTSCR1,GLTSCR2,GRIN2D,GRWD1,GYS1,HRC,HSD17B14,IZUMO1,KCNA7,KCNJ14,KDELR1,LHB,LIG1,LIN7B,LMTK3,MAMSTR,NAPA,NTF4,NTN5,NUCB1,PIH1D1,PLA2G4C,PLEKHA4,PPFIA3,PPP1R15A,PTH2,RASIP1,RPL18,RUVBL2,SEPW1,SLC17A7,SLC6A16,SNRNP70,SPACA4,SPHK2,SULT2A1,SULT2B1,SYNGR4,TEAD2,TMEM143,TPRX1,TRPM4,TULP2,ZNF114,ZNF541"
TCGA.AA.A01Q.01A	19	48018059	48248769	23	-0.0968	NEUTRAL	NA	4	"EHD2,GLTSCR1,NAPA,ZNF541"
TCGA.DY.A1DF	19	48125046	48164768	13	0.3161	NEUTRAL	NA	1	GLTSCR1
TCGA.AA.A010.01A	19	48205113	48260171	17	-0.1086	NEUTRAL	NA	3	"EHD2,GLTSCR1,GLTSCR2"
TCGA.AM.5820	19	48301832	48530429	56	-0.2643	NEUTRAL	NA	5	"BSPH1,CRX,ELSPBP1,SULT2A1,TPRX1"
TCGA.D5.6536	19	48324721	59095125	2791	-0.0294	NEUTRAL	NA	375	Too-Many
TCGA.AG.3909.01A	19	48337652	48479921	10	0.3607	NEUTRAL	NA	3	"BSPH1,CRX,SULT2A1"
TCGA.AG.A01W.01A	19	48366012	48998250	112	-0.2287	NEUTRAL	NA	19	"BSPH1,C19orf68,CABP5,CARD8,CCDC114,CYTH2,ELSPBP1,EMP3,GRIN2D,GRWD1,KCNJ14,KDELR1,LIG1,LMTK3,PLA2G4C,SULT2A1,SYNGR4,TMEM143,ZNF114"
TCGA.AG.A00C.01A	19	48386783	48652969	45	-0.2304	NEUTRAL	NA	6	"BSPH1,CABP5,ELSPBP1,LIG1,PLA2G4C,SULT2A1"
TCGA.CK.4952.01A	19	48453937	59324212	2176	-0.1631	NEUTRAL	NA	373	Too-Many
TCGA.AM.5820	19	48531190	48536862	12	0.242	NEUTRAL	NA	1	CABP5
TCGA.AM.5820	19	48539978	48581141	17	-0.2938	NEUTRAL	NA	2	"CABP5,PLA2G4C"
TCGA.G4.6303	19	48568102	50177170	288	-0.0544	NEUTRAL	NA	77	"ALDH16A1,BAX,BCAT2,BCL2L12,C19orf68,C19orf73,CA11,CARD8,CCDC114,CCDC155,CD37,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,CYTH2,DBP,DHDH,DKKL1,EMP3,FAM83E,FCGRT,FGF21,FLT3LG,FTL,FUT1,FUT2,GFY,GRIN2D,GRWD1,GYS1,HRC,HSD17B14,IRF3,IZUMO1,KCNA7,KCNJ14,KDELR1,LHB,LIG1,LIN7B,LMTK3,MAMSTR,NOSIP,NTF4,NTN5,NUCB1,PIH1D1,PLA2G4C,PLEKHA4,PPFIA3,PPP1R15A,PRR12,PRRG2,PTH2,RASIP1,RCN3,RPL13A,RPL18,RPS11,RRAS,RUVBL2,SCAF1,SLC17A7,SLC6A16,SNRNP70,SPACA4,SPHK2,SULT2B1,SYNGR4,TEAD2,TMEM143,TRPM4,TULP2,ZNF114"
TCGA.AA.A01Q.01A	19	48580955	48863281	62	0.0357	NEUTRAL	NA	8	"C19orf68,CARD8,CCDC114,EMP3,LIG1,PLA2G4C,TMEM143,ZNF114"
TCGA.CK.5914.01A	19	48580955	49119953	136	0.0401	NEUTRAL	NA	19	"C19orf68,CARD8,CCDC114,CYTH2,EMP3,FAM83E,GRIN2D,GRWD1,KCNJ14,KDELR1,LIG1,LMTK3,PLA2G4C,RPL18,SPACA4,SULT2B1,SYNGR4,TMEM143,ZNF114"
TCGA.AM.5820	19	48588011	48739270	75	0.1271	NEUTRAL	NA	4	"C19orf68,CARD8,LIG1,PLA2G4C"
TCGA.AG.3909.01A	19	48602917	48782984	35	0.1996	NEUTRAL	NA	5	"C19orf68,CARD8,LIG1,PLA2G4C,ZNF114"
TCGA.AA.A00Q.01A	19	48608543	52785002	848	0.3627	NEUTRAL	NA	166	Too-Many
TCGA.AG.A00C.01A	19	48653296	49392715	168	0.212	NEUTRAL	NA	33	"BCAT2,C19orf68,CA11,CARD8,CCDC114,CYTH2,DBP,EMP3,FAM83E,FGF21,FUT1,FUT2,GRIN2D,GRWD1,HSD17B14,IZUMO1,KCNJ14,KDELR1,LIG1,LMTK3,MAMSTR,NTN5,PLEKHA4,PPP1R15A,RASIP1,RPL18,SPACA4,SPHK2,SULT2B1,SYNGR4,TMEM143,TULP2,ZNF114"
TCGA.AA.A00N.01A	19	48654460	49119092	106	-0.3346	NEUTRAL	NA	18	"C19orf68,CARD8,CCDC114,CYTH2,EMP3,FAM83E,GRIN2D,GRWD1,KCNJ14,KDELR1,LIG1,LMTK3,RPL18,SPACA4,SULT2B1,SYNGR4,TMEM143,ZNF114"
TCGA.A6.A56B	19	48658931	59095125	2664	0.2929	NEUTRAL	NA	369	Too-Many
TCGA.AG.4009.01A	19	48668764	48724940	5	-0.0129	NEUTRAL	NA	3	"C19orf68,CARD8,LIG1"
TCGA.AM.5820	19	48768025	52076480	673	0.1866	NEUTRAL	NA	144	Too-Many
TCGA.AG.3909.01A	19	48837223	48973162	32	0.1033	NEUTRAL	NA	7	"CYTH2,GRIN2D,GRWD1,KCNJ14,KDELR1,SYNGR4,TMEM143"
TCGA.AG.4009.01A	19	48887439	48944996	12	0.1372	NEUTRAL	NA	2	"GRIN2D,KDELR1"
TCGA.QG.A5Z1	19	48914177	59095125	2582	-0.063	NEUTRAL	NA	360	Too-Many
TCGA.AG.3731	19	48938381	59095125	2588	0	NEUTRAL	NA	360	Too-Many
TCGA.DC.6154	19	48959234	59095125	2579	-0.0083	NEUTRAL	NA	358	Too-Many
TCGA.AG.4009.01A	19	48976509	49005643	13	-0.1701	NEUTRAL	NA	2	"CYTH2,LMTK3"
TCGA.AG.3909.01A	19	48988952	49016330	11	-0.1549	NEUTRAL	NA	1	LMTK3
TCGA.AA.A01Q.01A	19	48988952	49106803	14	0.0216	NEUTRAL	NA	3	"FAM83E,LMTK3,SULT2B1"
TCGA.AG.4009.01A	19	49012061	49102344	10	0.355	NEUTRAL	NA	2	"LMTK3,SULT2B1"
TCGA.AG.A01W.01A	19	49031452	49192076	23	0.2106	NEUTRAL	NA	8	"CA11,DBP,FAM83E,NTN5,RPL18,SPACA4,SPHK2,SULT2B1"
TCGA.AG.4009.01A	19	49104346	49253442	49	-0.4575	NEUTRAL	NA	12	"CA11,DBP,FAM83E,FUT1,FUT2,IZUMO1,MAMSTR,NTN5,RASIP1,RPL18,SPACA4,SPHK2"
TCGA.AG.3909.01A	19	49106803	49119092	6	0.0954	NEUTRAL	NA	3	"FAM83E,RPL18,SPACA4"
TCGA.CK.5914.01A	19	49120522	49253442	49	-0.451	NEUTRAL	NA	10	"CA11,DBP,FUT1,FUT2,IZUMO1,MAMSTR,NTN5,RASIP1,RPL18,SPHK2"
TCGA.AG.A01W.01A	19	49192534	49470106	47	-0.0833	NEUTRAL	NA	15	"BAX,BCAT2,DHDH,FGF21,FTL,FUT1,FUT2,HSD17B14,IZUMO1,MAMSTR,NUCB1,PLEKHA4,PPP1R15A,RASIP1,TULP2"
TCGA.AF.3914.01A	19	49245024	49510228	99	-0.0179	NEUTRAL	NA	14	"BAX,BCAT2,DHDH,FGF21,FTL,FUT1,GYS1,HSD17B14,IZUMO1,NUCB1,PLEKHA4,PPP1R15A,RUVBL2,TULP2"
TCGA.AA.A010.01A	19	49253442	49261170	4	-0.5046	NEUTRAL	NA	2	"FGF21,FUT1"
TCGA.AG.3909.01A	19	49253442	49370734	33	0.1038	NEUTRAL	NA	5	"BCAT2,FGF21,FUT1,HSD17B14,PLEKHA4"
TCGA.AG.3906.01A	19	49253442	49558598	105	0.1713	NEUTRAL	NA	20	"BAX,BCAT2,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,DHDH,FGF21,FTL,FUT1,GYS1,HSD17B14,LHB,NUCB1,PLEKHA4,PPP1R15A,RUVBL2,TULP2"
TCGA.CK.5914.01A	19	49259446	49447562	64	0.1726	NEUTRAL	NA	8	"BCAT2,DHDH,FGF21,HSD17B14,NUCB1,PLEKHA4,PPP1R15A,TULP2"
TCGA.AA.A01Q.01A	19	49261170	49364606	28	0.0513	NEUTRAL	NA	4	"BCAT2,FGF21,HSD17B14,PLEKHA4"
TCGA.AA.A01Q.01A	19	49368712	49392715	11	-0.4299	NEUTRAL	NA	3	"PLEKHA4,PPP1R15A,TULP2"
TCGA.AG.A00C.01A	19	49398208	49425117	15	-0.0962	NEUTRAL	NA	2	"NUCB1,TULP2"
TCGA.AA.A01Q.01A	19	49398208	49447562	22	0.0834	NEUTRAL	NA	3	"DHDH,NUCB1,TULP2"
TCGA.AG.A00C.01A	19	49425523	50455097	342	0.2972	NEUTRAL	NA	58	"ADM5,AKT1S1,ALDH16A1,AP2A1,ATF5,BAX,BCL2L12,C19orf73,CCDC155,CD37,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,CPT1C,DHDH,DKKL1,FCGRT,FLT3LG,FTL,FUZ,GFY,GYS1,HRC,IL4I1,IRF3,KCNA7,LHB,LIN7B,MED25,NOSIP,NTF4,NUCB1,NUP62,PIH1D1,PNKP,PPFIA3,PRMT1,PRR12,PRRG2,PTH2,PTOV1,RCN3,RPL13A,RPS11,RRAS,RUVBL2,SCAF1,SIGLEC11,SLC17A7,SLC6A16,SNRNP70,TBC1D17,TEAD2,TRPM4,TSKS"
TCGA.AG.4009.01A	19	49439239	49551962	47	0.3308	NEUTRAL	NA	11	"BAX,CGB,CGB1,CGB2,CGB5,CGB8,DHDH,FTL,GYS1,LHB,RUVBL2"
TCGA.AA.A010.01A	19	49447562	49527194	40	-0.09	NEUTRAL	NA	7	"BAX,CGB,DHDH,FTL,GYS1,LHB,RUVBL2"
TCGA.CK.5914.01A	19	49448043	49693892	103	-0.1837	NEUTRAL	NA	20	"BAX,C19orf73,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,DHDH,FTL,GYS1,HRC,KCNA7,LHB,LIN7B,NTF4,PPFIA3,RUVBL2,SNRNP70,TRPM4"
TCGA.AA.A01D.01A	19	49472986	54803873	894	0.0903	NEUTRAL	NA	183	Too-Many
TCGA.AG.3909.01A	19	49477428	49573323	36	-0.2874	NEUTRAL	NA	11	"CGB,CGB1,CGB2,CGB5,CGB7,CGB8,GYS1,KCNA7,LHB,NTF4,RUVBL2"
TCGA.AG.A01J.01A	19	49481134	59082320	1600	-0.2139	NEUTRAL	NA	332	Too-Many
TCGA.AG.A01W.01A	19	49483163	49693134	26	0.2233	NEUTRAL	NA	17	"C19orf73,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,GYS1,HRC,KCNA7,LHB,LIN7B,NTF4,PPFIA3,RUVBL2,SNRNP70,TRPM4"
TCGA.AA.A01Q.01A	19	49488717	49538843	13	0.0683	NEUTRAL	NA	6	"CGB,CGB1,CGB2,GYS1,LHB,RUVBL2"
TCGA.AG.4009.01A	19	49558598	49632073	15	-0.2984	NEUTRAL	NA	7	"C19orf73,CGB7,KCNA7,LIN7B,NTF4,PPFIA3,SNRNP70"
TCGA.AA.A010.01A	19	49604588	49644637	23	-0.3924	NEUTRAL	NA	4	"C19orf73,LIN7B,PPFIA3,SNRNP70"
TCGA.AG.3891.01A	19	49604588	49934265	105	0.2728	NEUTRAL	NA	14	"C19orf73,CCDC155,CD37,DKKL1,GFY,HRC,LIN7B,PPFIA3,PTH2,SLC17A7,SLC6A16,SNRNP70,TEAD2,TRPM4"
TCGA.AF.3914.01A	19	49631089	49912156	92	0.0052	NEUTRAL	NA	8	"CCDC155,CD37,DKKL1,HRC,PPFIA3,SLC6A16,TEAD2,TRPM4"
TCGA.AG.3906.01A	19	49638998	49644637	6	0.1778	NEUTRAL	NA	1	PPFIA3
TCGA.AA.A010.01A	19	49645255	49902241	74	0.2695	NEUTRAL	NA	8	"CCDC155,CD37,DKKL1,HRC,PPFIA3,SLC6A16,TEAD2,TRPM4"
TCGA.AG.3906.01A	19	49646009	49671489	17	-0.3229	NEUTRAL	NA	3	"HRC,PPFIA3,TRPM4"
TCGA.AG.4009.01A	19	49674575	49705183	12	-0.0455	NEUTRAL	NA	1	TRPM4
TCGA.AG.3906.01A	19	49674575	49793393	17	0.1832	NEUTRAL	NA	2	"SLC6A16,TRPM4"
TCGA.AA.A01Q.01A	19	49684555	49841920	22	0.3775	NEUTRAL	NA	3	"CD37,SLC6A16,TRPM4"
TCGA.AA.A00L.01A	19	49685873	49850406	30	0.1559	NEUTRAL	NA	4	"CD37,SLC6A16,TEAD2,TRPM4"
TCGA.AG.A01W.01A	19	49696014	49716303	9	-0.1633	NEUTRAL	NA	1	TRPM4
TCGA.AG.3909.01A	19	49699646	49814142	19	0.2662	NEUTRAL	NA	2	"SLC6A16,TRPM4"
TCGA.CK.5914.01A	19	49699646	49842541	24	0.3526	NEUTRAL	NA	3	"CD37,SLC6A16,TRPM4"
TCGA.AA.A00N.01A	19	49713429	49814142	15	0.3577	NEUTRAL	NA	2	"SLC6A16,TRPM4"
TCGA.AG.A01W.01A	19	49718538	49720937	3	0.3034	NEUTRAL	NA	0	None
TCGA.DY.A1DF	19	49725041	50106307	60	0.317	NEUTRAL	NA	18	"ALDH16A1,CCDC155,CD37,DKKL1,FCGRT,FLT3LG,GFY,NOSIP,PIH1D1,PRR12,PRRG2,PTH2,RCN3,RPL13A,RPS11,SLC17A7,SLC6A16,TEAD2"
TCGA.G4.6317	19	49725041	59095125	2488	-0.3348	NEUTRAL	NA	315	Too-Many
TCGA.AG.A01W.01A	19	49725249	50103619	64	-0.3212	NEUTRAL	NA	18	"ALDH16A1,CCDC155,CD37,DKKL1,FCGRT,FLT3LG,GFY,NOSIP,PIH1D1,PRR12,PRRG2,PTH2,RCN3,RPL13A,RPS11,SLC17A7,SLC6A16,TEAD2"
TCGA.AG.3906.01A	19	49793814	49901222	34	-0.0508	NEUTRAL	NA	5	"CCDC155,CD37,DKKL1,SLC6A16,TEAD2"
TCGA.AA.A01Q.01A	19	49842541	49862626	11	-0.1891	NEUTRAL	NA	2	"CD37,TEAD2"
TCGA.CK.5914.01A	19	49843470	50435627	257	-0.1526	NEUTRAL	NA	35	"ADM5,AKT1S1,ALDH16A1,AP2A1,ATF5,BCL2L12,CCDC155,CD37,CPT1C,DKKL1,FCGRT,FLT3LG,FUZ,GFY,IL4I1,IRF3,MED25,NOSIP,NUP62,PIH1D1,PNKP,PRMT1,PRR12,PRRG2,PTH2,PTOV1,RCN3,RPL13A,RPS11,RRAS,SCAF1,SLC17A7,TBC1D17,TEAD2,TSKS"
TCGA.AA.A00L.01A	19	49898333	50411454	184	0.2713	NEUTRAL	NA	31	"ADM5,AKT1S1,ALDH16A1,AP2A1,BCL2L12,CCDC155,CPT1C,FCGRT,FLT3LG,FUZ,GFY,IL4I1,IRF3,MED25,NOSIP,NUP62,PIH1D1,PNKP,PRMT1,PRR12,PRRG2,PTH2,PTOV1,RCN3,RPL13A,RPS11,RRAS,SCAF1,SLC17A7,TBC1D17,TSKS"
TCGA.AA.A010.01A	19	49902649	49926418	11	-0.1983	NEUTRAL	NA	2	"CCDC155,PTH2"
TCGA.AG.3906.01A	19	49902649	49926418	11	0.2988	NEUTRAL	NA	2	"CCDC155,PTH2"
TCGA.AF.3914.01A	19	49912958	49964060	26	-0.4788	NEUTRAL	NA	6	"ALDH16A1,CCDC155,GFY,PIH1D1,PTH2,SLC17A7"
TCGA.AG.4009.01A	19	49935769	49954697	12	-0.3188	NEUTRAL	NA	2	"PIH1D1,SLC17A7"
TCGA.AG.3891.01A	19	49944517	50138804	69	0.2556	NEUTRAL	NA	12	"ALDH16A1,FCGRT,FLT3LG,NOSIP,PIH1D1,PRR12,PRRG2,RCN3,RPL13A,RPS11,RRAS,SLC17A7"
TCGA.AA.A01Q.01A	19	49950217	50139849	65	-0.2988	NEUTRAL	NA	11	"ALDH16A1,FCGRT,FLT3LG,NOSIP,PIH1D1,PRR12,PRRG2,RCN3,RPL13A,RPS11,RRAS"
TCGA.AG.3906.01A	19	49962908	50128670	55	0.0723	NEUTRAL	NA	9	"ALDH16A1,FCGRT,FLT3LG,NOSIP,PRR12,PRRG2,RCN3,RPL13A,RPS11"
TCGA.AA.A010.01A	19	49964844	50001122	26	0.1941	NEUTRAL	NA	4	"ALDH16A1,FLT3LG,RPL13A,RPS11"
TCGA.AF.3914.01A	19	49964844	50037408	33	0.0275	NEUTRAL	NA	6	"ALDH16A1,FCGRT,FLT3LG,RCN3,RPL13A,RPS11"
TCGA.AA.A004.01A	19	49967061	59082320	1349	-0.2734	NEUTRAL	NA	306	Too-Many
TCGA.AA.A02K.01A	19	49972071	50149324	61	-0.0488	NEUTRAL	NA	11	"ALDH16A1,FCGRT,FLT3LG,NOSIP,PRR12,PRRG2,RCN3,RPL13A,RPS11,RRAS,SCAF1"
TCGA.AG.4009.01A	19	50040271	50102572	16	-0.3157	NEUTRAL	NA	4	"NOSIP,PRR12,PRRG2,RCN3"
TCGA.AG.3909.01A	19	50042310	50243288	74	-0.1578	NEUTRAL	NA	12	"ADM5,BCL2L12,CPT1C,IRF3,NOSIP,PRMT1,PRR12,PRRG2,RCN3,RRAS,SCAF1,TSKS"
TCGA.AA.A010.01A	19	50062093	50119003	20	-0.2012	NEUTRAL	NA	3	"NOSIP,PRR12,PRRG2"
TCGA.A6.6138	19	50080249	59095125	2432	0.3135	NEUTRAL	NA	300	Too-Many
TCGA.AA.A02E.01A	19	50093105	50167882	25	-0.1873	NEUTRAL	NA	5	"IRF3,PRR12,PRRG2,RRAS,SCAF1"
TCGA.AG.A016.01A	19	50102572	50139849	11	-0.2473	NEUTRAL	NA	2	"PRR12,RRAS"
TCGA.AG.4009.01A	19	50139849	50185388	24	-0.3112	NEUTRAL	NA	5	"BCL2L12,IRF3,PRMT1,RRAS,SCAF1"
TCGA.AG.A01W.01A	19	50144210	50157024	2	-0.4694	NEUTRAL	NA	1	SCAF1
TCGA.AA.A02K.01A	19	50162876	54722951	878	-0.0132	NEUTRAL	NA	142	Too-Many
TCGA.AG.A01W.01A	19	50168138	50197977	13	0.0143	NEUTRAL	NA	5	"ADM5,BCL2L12,CPT1C,IRF3,PRMT1"
TCGA.AF.3914.01A	19	50172051	50357632	74	-0.0965	NEUTRAL	NA	9	"ADM5,AP2A1,BCL2L12,CPT1C,FUZ,MED25,PRMT1,PTOV1,TSKS"
TCGA.AG.3891.01A	19	50173466	51015881	234	0.1896	NEUTRAL	NA	30	"ADM5,AKT1S1,AP2A1,ASPDH,ATF5,BCL2L12,CPT1C,EMC10,FAM71E1,FUZ,IL4I1,IZUMO2,JOSD2,KCNC3,MED25,MYBPC2,MYH14,NAPSA,NR1H2,NUP62,PNKP,POLD1,PRMT1,PTOV1,SIGLEC11,SPIB,TBC1D17,TSKS,VRK3,ZNF473"
TCGA.AG.3906.01A	19	50176879	51132513	229	0.1418	NEUTRAL	NA	32	"ADM5,AKT1S1,AP2A1,ASPDH,ATF5,BCL2L12,CPT1C,EMC10,FAM71E1,FUZ,IL4I1,IZUMO2,JOSD2,KCNC3,LRRC4B,MED25,MYBPC2,MYH14,NAPSA,NR1H2,NUP62,PNKP,POLD1,PRMT1,PTOV1,SIGLEC11,SPIB,SYT3,TBC1D17,TSKS,VRK3,ZNF473"
TCGA.AA.A010.01A	19	50187155	50321591	55	0.3107	NEUTRAL	NA	7	"ADM5,AP2A1,CPT1C,FUZ,MED25,PRMT1,TSKS"
TCGA.AG.A025.01A	19	50187155	54972687	830	-0.2706	NEUTRAL	NA	149	Too-Many
TCGA.AA.A01Q.01A	19	50187963	50208217	12	-0.3147	NEUTRAL	NA	3	"ADM5,CPT1C,PRMT1"
TCGA.AA.A02E.01A	19	50187963	59082320	1361	-0.1579	NEUTRAL	NA	293	Too-Many
TCGA.G4.6303	19	50197405	51455388	263	-0.5013	NEUTRAL	NA	41	"ACPT,AKT1S1,AP2A1,ASPDH,ATF5,C19orf48,C19orf81,CLEC11A,CPT1C,EMC10,FAM71E1,FUZ,GPR32,IL4I1,IZUMO2,JOSD2,KCNC3,KLK1,KLK15,KLK2,KLK3,KLK4,KLK5,LRRC4B,MED25,MYBPC2,MYH14,NAPSA,NR1H2,NUP62,PNKP,POLD1,PTOV1,SHANK1,SIGLEC11,SPIB,SYT3,TBC1D17,TSKS,VRK3,ZNF473"
TCGA.AG.A01W.01A	19	50204816	50259073	20	-0.4943	NEUTRAL	NA	2	"CPT1C,TSKS"
TCGA.AA.A01Q.01A	19	50209149	50308658	28	0.1728	NEUTRAL	NA	3	"AP2A1,CPT1C,TSKS"
TCGA.AA.A01F.01A	19	50213530	50216655	5	-0.3964	NEUTRAL	NA	1	CPT1C
TCGA.AA.A01F.01A	19	50242985	50335137	29	0.0222	NEUTRAL	NA	4	"AP2A1,FUZ,MED25,TSKS"
TCGA.AG.A016.01A	19	50242985	55297913	847	0.2575	NEUTRAL	NA	156	Too-Many
TCGA.AG.4009.01A	19	50265211	50315471	17	0.1267	NEUTRAL	NA	3	"AP2A1,FUZ,TSKS"
TCGA.AG.A01W.01A	19	50285232	50466534	22	-0.4509	NEUTRAL	NA	11	"AKT1S1,AP2A1,ATF5,FUZ,IL4I1,MED25,NUP62,PNKP,PTOV1,SIGLEC11,TBC1D17"
TCGA.AA.3967.01A	19	50295144	50312366	15	-0.2609	NEUTRAL	NA	2	"AP2A1,FUZ"
TCGA.AA.A01Q.01A	19	50310376	50340052	20	-0.3755	NEUTRAL	NA	2	"FUZ,MED25"
TCGA.AA.A01F.01A	19	50338212	50386859	21	0.3673	NEUTRAL	NA	5	"AKT1S1,MED25,PNKP,PTOV1,TBC1D17"
TCGA.AF.3914.01A	19	50370269	51013495	162	0.0187	NEUTRAL	NA	20	"AKT1S1,ATF5,EMC10,FAM71E1,IL4I1,IZUMO2,JOSD2,KCNC3,MYBPC2,MYH14,NAPSA,NR1H2,NUP62,PNKP,POLD1,SIGLEC11,SPIB,TBC1D17,VRK3,ZNF473"
TCGA.AA.A01Q.01A	19	50376225	50519239	43	-0.2524	NEUTRAL	NA	7	"AKT1S1,ATF5,IL4I1,NUP62,SIGLEC11,TBC1D17,VRK3"
TCGA.AA.A01F.01A	19	50387473	51537763	189	0.0504	NEUTRAL	NA	40	"ACPT,ASPDH,ATF5,C19orf48,C19orf81,CLEC11A,EMC10,FAM71E1,GPR32,IL4I1,IZUMO2,JOSD2,KCNC3,KLK1,KLK10,KLK11,KLK12,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9,LRRC4B,MYBPC2,MYH14,NAPSA,NR1H2,NUP62,POLD1,SHANK1,SIGLEC11,SPIB,SYT3,TBC1D17,VRK3,ZNF473"
TCGA.AA.A010.01A	19	50390988	50412769	12	-0.191	NEUTRAL	NA	3	"IL4I1,NUP62,TBC1D17"
TCGA.AA.3955	19	50427994	59095125	2392	-0.3534	NEUTRAL	NA	282	Too-Many
TCGA.AG.A00C.01A	19	50455503	50547877	21	-0.1439	NEUTRAL	NA	3	"SIGLEC11,VRK3,ZNF473"
TCGA.AG.A01W.01A	19	50472985	50550694	31	0.0244	NEUTRAL	NA	2	"VRK3,ZNF473"
TCGA.AG.3611.01A	19	50482314	53686045	387	0.2009	NEUTRAL	NA	96	"ACPT,ASPDH,C19orf48,C19orf81,C19orf84,CD33,CEACAM18,CLDND2,CLEC11A,CTU1,EMC10,ERVV-1,ERVV-2,ETFB,FAM71E1,FPR1,FPR2,FPR3,GPR32,HAS1,IGLON5,IZUMO2,JOSD2,KCNC3,KLK1,KLK10,KLK11,KLK12,KLK13,KLK14,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9,LIM2,LOC100129083,LRRC4B,MYBPC2,MYH14,NAPSA,NKG7,NR1H2,POLD1,PPP2R1A,SHANK1,SIGLEC10,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC7,SIGLEC8,SIGLEC9,SIGLECL1,SPIB,SYT3,VRK3,VSIG10L,ZNF160,ZNF175,ZNF28,ZNF320,ZNF347,ZNF350,ZNF415,ZNF432,ZNF468,ZNF473,ZNF480,ZNF528,ZNF534,ZNF577,ZNF578,ZNF600,ZNF610,ZNF611,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF665,ZNF701,ZNF766,ZNF808,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF836,ZNF841,ZNF880"
TCGA.AG.A01W.01A	19	50552320	50896847	89	-0.4135	NEUTRAL	NA	6	"IZUMO2,KCNC3,MYH14,NAPSA,NR1H2,POLD1"
TCGA.AG.3909.01A	19	50655821	50792663	35	-0.4393	NEUTRAL	NA	2	"IZUMO2,MYH14"
TCGA.AA.A00N.01A	19	50655821	50938366	91	-0.2562	NEUTRAL	NA	8	"IZUMO2,KCNC3,MYBPC2,MYH14,NAPSA,NR1H2,POLD1,SPIB"
TCGA.AG.A00C.01A	19	50655821	51227120	137	0.3074	NEUTRAL	NA	17	"ASPDH,C19orf81,CLEC11A,EMC10,FAM71E1,IZUMO2,JOSD2,KCNC3,LRRC4B,MYBPC2,MYH14,NAPSA,NR1H2,POLD1,SHANK1,SPIB,SYT3"
TCGA.AA.A00L.01A	19	50657810	50862228	13	0.1227	NEUTRAL	NA	4	"IZUMO2,KCNC3,MYH14,NAPSA"
TCGA.AA.A01Q.01A	19	50662396	50730095	7	-0.1343	NEUTRAL	NA	2	"IZUMO2,MYH14"
TCGA.AA.3967.01A	19	50665952	52772779	396	0.3409	NEUTRAL	NA	71	"ACPT,ASPDH,C19orf48,C19orf81,C19orf84,CD33,CEACAM18,CLDND2,CLEC11A,CTU1,EMC10,ETFB,FAM71E1,FPR1,FPR2,FPR3,GPR32,HAS1,IGLON5,IZUMO2,JOSD2,KCNC3,KLK1,KLK10,KLK11,KLK12,KLK13,KLK14,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9,LIM2,LOC100129083,LRRC4B,MYBPC2,MYH14,NAPSA,NKG7,NR1H2,POLD1,PPP2R1A,SHANK1,SIGLEC10,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC7,SIGLEC8,SIGLEC9,SIGLECL1,SPIB,SYT3,VSIG10L,ZNF175,ZNF350,ZNF432,ZNF577,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF836,ZNF841"
TCGA.CK.5914.01A	19	50666221	51330877	181	-0.0894	NEUTRAL	NA	22	"ACPT,ASPDH,C19orf48,C19orf81,CLEC11A,EMC10,FAM71E1,GPR32,IZUMO2,JOSD2,KCNC3,KLK1,KLK15,LRRC4B,MYBPC2,MYH14,NAPSA,NR1H2,POLD1,SHANK1,SPIB,SYT3"
TCGA.DY.A1DF	19	50785385	51917734	314	0.2545	NEUTRAL	NA	47	"ACPT,ASPDH,C19orf48,C19orf81,C19orf84,CD33,CLDND2,CLEC11A,CTU1,EMC10,ETFB,FAM71E1,GPR32,IGLON5,JOSD2,KCNC3,KLK1,KLK10,KLK11,KLK12,KLK13,KLK14,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9,LIM2,LRRC4B,MYBPC2,MYH14,NAPSA,NKG7,NR1H2,POLD1,SHANK1,SIGLEC10,SIGLEC7,SIGLEC9,SIGLECL1,SPIB,SYT3,VSIG10L"
TCGA.AA.A01Q.01A	19	50826184	50881386	10	-0.2083	NEUTRAL	NA	3	"KCNC3,NAPSA,NR1H2"
TCGA.AA.A010.01A	19	50868736	51051851	79	0.0954	NEUTRAL	NA	10	"ASPDH,EMC10,FAM71E1,JOSD2,LRRC4B,MYBPC2,NAPSA,NR1H2,POLD1,SPIB"
TCGA.AA.A00L.01A	19	50881386	52195801	229	0.3696	NEUTRAL	NA	52	"ACPT,ASPDH,C19orf48,C19orf81,C19orf84,CD33,CEACAM18,CLDND2,CLEC11A,CTU1,EMC10,ETFB,FAM71E1,GPR32,IGLON5,JOSD2,KLK1,KLK10,KLK11,KLK12,KLK13,KLK14,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9,LIM2,LOC100129083,LRRC4B,MYBPC2,NKG7,NR1H2,POLD1,SHANK1,SIGLEC10,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC7,SIGLEC8,SIGLEC9,SIGLECL1,SPIB,SYT3,VSIG10L,ZNF175"
TCGA.AG.A01W.01A	19	50897951	50991021	23	-0.0153	NEUTRAL	NA	5	"EMC10,FAM71E1,MYBPC2,POLD1,SPIB"
TCGA.AA.3841	19	50907167	59095125	2299	0.3327	NEUTRAL	NA	271	Too-Many
TCGA.AA.A01Q.01A	19	50922145	50931267	6	-0.3028	NEUTRAL	NA	1	SPIB
TCGA.AA.A01Q.01A	19	50940653	51135492	35	0.3319	NEUTRAL	NA	7	"ASPDH,EMC10,FAM71E1,JOSD2,LRRC4B,MYBPC2,SYT3"
TCGA.AG.3909.01A	19	50967601	51301321	59	-0.1307	NEUTRAL	NA	13	"ACPT,ASPDH,C19orf48,C19orf81,CLEC11A,EMC10,FAM71E1,GPR32,JOSD2,LRRC4B,MYBPC2,SHANK1,SYT3"
TCGA.AG.A01W.01A	19	51005665	51905958	113	-0.2476	NEUTRAL	NA	37	"ACPT,ASPDH,C19orf48,C19orf81,C19orf84,CD33,CLDND2,CLEC11A,CTU1,ETFB,GPR32,IGLON5,JOSD2,KLK1,KLK10,KLK11,KLK12,KLK13,KLK14,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9,LIM2,LRRC4B,NKG7,SHANK1,SIGLEC7,SIGLEC9,SIGLECL1,SYT3,VSIG10L"
TCGA.AH.6544	19	51029601	59095125	2278	-0.3121	NEUTRAL	NA	264	Too-Many
TCGA.DM.A1DA	19	51135456	59095125	2260	-0.1072	NEUTRAL	NA	263	Too-Many
TCGA.DM.A1D9	19	51136808	59095125	2257	-0.3303	NEUTRAL	NA	263	Too-Many
TCGA.AA.A01Q.01A	19	51140474	51219874	24	-0.2746	NEUTRAL	NA	3	"C19orf81,SHANK1,SYT3"
TCGA.AG.3891.01A	19	51165215	51200265	11	-0.0285	NEUTRAL	NA	1	SHANK1
TCGA.AA.A024.01A	19	51215212	51958634	140	-0.045	NEUTRAL	NA	35	"ACPT,C19orf48,C19orf84,CD33,CLDND2,CLEC11A,CTU1,ETFB,GPR32,IGLON5,KLK1,KLK10,KLK11,KLK12,KLK13,KLK14,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9,LIM2,LOC100129083,NKG7,SHANK1,SIGLEC10,SIGLEC7,SIGLEC8,SIGLEC9,SIGLECL1,VSIG10L"
TCGA.AA.A00N.01A	19	51219874	51334630	21	-0.2233	NEUTRAL	NA	7	"ACPT,C19orf48,CLEC11A,GPR32,KLK1,KLK15,SHANK1"
TCGA.AA.A01Q.01A	19	51226735	51413866	33	0.0532	NEUTRAL	NA	9	"ACPT,C19orf48,CLEC11A,GPR32,KLK1,KLK15,KLK2,KLK3,KLK4"
TCGA.AF.3914.01A	19	51227638	55790747	831	-0.1367	NEUTRAL	NA	146	Too-Many
TCGA.AG.A00C.01A	19	51228227	51363181	22	-0.0055	NEUTRAL	NA	7	"ACPT,C19orf48,CLEC11A,GPR32,KLK1,KLK15,KLK3"
TCGA.AG.3906.01A	19	51293633	54079899	356	-0.0947	NEUTRAL	NA	85	"ACPT,BIRC8,C19orf48,C19orf84,CD33,CEACAM18,CLDND2,CTU1,ERVV-1,ERVV-2,ETFB,FPR1,FPR2,FPR3,HAS1,IGLON5,KLK1,KLK10,KLK11,KLK12,KLK13,KLK14,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9,LIM2,LOC100129083,NKG7,PPP2R1A,SIGLEC10,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC7,SIGLEC8,SIGLEC9,SIGLECL1,VN1R2,VN1R4,VSIG10L,ZNF160,ZNF175,ZNF28,ZNF320,ZNF331,ZNF347,ZNF350,ZNF415,ZNF432,ZNF468,ZNF480,ZNF528,ZNF534,ZNF577,ZNF578,ZNF600,ZNF610,ZNF611,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF836,ZNF841,ZNF845,ZNF880"
TCGA.AG.3891.01A	19	51294906	51324950	9	-0.3061	NEUTRAL	NA	3	"ACPT,C19orf48,KLK1"
TCGA.AG.3891.01A	19	51326880	51451866	20	0.0575	NEUTRAL	NA	6	"KLK1,KLK15,KLK2,KLK3,KLK4,KLK5"
TCGA.AG.3909.01A	19	51334630	51522241	43	0.2931	NEUTRAL	NA	10	"KLK10,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9"
TCGA.CK.5914.01A	19	51334630	51585765	64	0.3067	NEUTRAL	NA	14	"KLK10,KLK11,KLK12,KLK13,KLK14,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9"
TCGA.AG.A00C.01A	19	51376651	51485519	22	-0.4316	NEUTRAL	NA	5	"KLK2,KLK4,KLK5,KLK6,KLK7"
TCGA.AG.4009.01A	19	51451866	51485519	13	0.1356	NEUTRAL	NA	3	"KLK5,KLK6,KLK7"
TCGA.AG.3891.01A	19	51453064	51485519	11	-0.4609	NEUTRAL	NA	3	"KLK5,KLK6,KLK7"
TCGA.G4.6303	19	51474524	55323092	1123	-0.0304	NEUTRAL	NA	116	Too-Many
TCGA.AA.A01Q.01A	19	51480740	51512422	14	0.1814	NEUTRAL	NA	3	"KLK7,KLK8,KLK9"
TCGA.AG.A00C.01A	19	51499294	51520319	11	0.0462	NEUTRAL	NA	3	"KLK10,KLK8,KLK9"
TCGA.AG.3891.01A	19	51499294	52772779	207	0.0588	NEUTRAL	NA	43	"C19orf84,CD33,CEACAM18,CLDND2,CTU1,ETFB,FPR1,FPR2,FPR3,HAS1,IGLON5,KLK10,KLK11,KLK12,KLK13,KLK14,KLK8,KLK9,LIM2,LOC100129083,NKG7,PPP2R1A,SIGLEC10,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC7,SIGLEC8,SIGLEC9,SIGLECL1,VSIG10L,ZNF175,ZNF350,ZNF432,ZNF577,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF836,ZNF841"
TCGA.AA.A01Q.01A	19	51518034	51561748	18	-0.279	NEUTRAL	NA	4	"KLK10,KLK11,KLK12,KLK13"
TCGA.AA.A00N.01A	19	51518034	51628240	27	-0.3506	NEUTRAL	NA	7	"CTU1,KLK10,KLK11,KLK12,KLK13,KLK14,SIGLEC9"
TCGA.AA.A01F.01A	19	51559797	51568202	5	-0.3616	NEUTRAL	NA	1	KLK13
TCGA.AA.A01Q.01A	19	51563031	51844360	38	0.2113	NEUTRAL	NA	9	"CD33,CTU1,IGLON5,KLK13,KLK14,SIGLEC7,SIGLEC9,SIGLECL1,VSIG10L"
TCGA.AG.3909.01A	19	51582678	51585765	3	-0.199	NEUTRAL	NA	1	KLK14
TCGA.AG.A00C.01A	19	51628240	52772779	168	-0.0341	NEUTRAL	NA	35	"C19orf84,CD33,CEACAM18,CLDND2,ETFB,FPR1,FPR2,FPR3,HAS1,IGLON5,LIM2,LOC100129083,NKG7,PPP2R1A,SIGLEC10,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC7,SIGLEC8,SIGLEC9,SIGLECL1,VSIG10L,ZNF175,ZNF350,ZNF432,ZNF577,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF836,ZNF841"
TCGA.AA.A01F.01A	19	51628240	59082320	1000	0.1102	NEUTRAL	NA	240	Too-Many
TCGA.AA.3858	19	51715273	55225075	1026	0.0497	NEUTRAL	NA	101	Too-Many
TCGA.AA.3867	19	51715273	59095125	2074	-0.0087	NEUTRAL	NA	238	Too-Many
TCGA.AG.3909.01A	19	51729522	51845145	18	0.1406	NEUTRAL	NA	4	"CD33,IGLON5,SIGLECL1,VSIG10L"
TCGA.CK.5914.01A	19	51729522	51979748	56	0.1393	NEUTRAL	NA	12	"C19orf84,CD33,CLDND2,ETFB,IGLON5,LIM2,LOC100129083,NKG7,SIGLEC10,SIGLEC8,SIGLECL1,VSIG10L"
TCGA.AA.A00N.01A	19	51771737	51883394	30	-0.4853	NEUTRAL	NA	7	"CLDND2,ETFB,IGLON5,LIM2,NKG7,SIGLECL1,VSIG10L"
TCGA.AG.4009.01A	19	51825260	51853523	8	-0.3765	NEUTRAL	NA	3	"ETFB,IGLON5,VSIG10L"
TCGA.AG.3605.01A	19	51843292	53995292	15	0.0989	NEUTRAL	NA	61	"BIRC8,C19orf84,CEACAM18,CLDND2,ERVV-1,ERVV-2,ETFB,FPR1,FPR2,FPR3,HAS1,LIM2,LOC100129083,NKG7,PPP2R1A,SIGLEC10,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC8,VN1R2,VN1R4,VSIG10L,ZNF160,ZNF175,ZNF28,ZNF320,ZNF347,ZNF350,ZNF415,ZNF432,ZNF468,ZNF480,ZNF528,ZNF534,ZNF577,ZNF578,ZNF600,ZNF610,ZNF611,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF836,ZNF841,ZNF845,ZNF880"
TCGA.AG.3909.01A	19	51848433	51979748	32	-0.4564	NEUTRAL	NA	8	"C19orf84,CLDND2,ETFB,LIM2,LOC100129083,NKG7,SIGLEC10,SIGLEC8"
TCGA.AG.4009.01A	19	51856339	52195801	68	0.2961	NEUTRAL	NA	14	"C19orf84,CEACAM18,CLDND2,ETFB,LIM2,LOC100129083,NKG7,SIGLEC10,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC8,ZNF175"
TCGA.AA.A01Q.01A	19	51869453	52004530	36	0.1892	NEUTRAL	NA	10	"C19orf84,CEACAM18,CLDND2,ETFB,LIM2,LOC100129083,NKG7,SIGLEC10,SIGLEC12,SIGLEC8"
TCGA.AG.A01W.01A	19	51922940	52240331	33	-0.1258	NEUTRAL	NA	8	"CEACAM18,HAS1,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC8,ZNF175"
TCGA.AA.A00N.01A	19	51955594	51979748	9	-0.1271	NEUTRAL	NA	1	SIGLEC8
TCGA.AG.3732	19	51973700	59095125	1983	-0.0059	NEUTRAL	NA	226	Too-Many
TCGA.AA.A024.01A	19	51979748	59082320	1090	0.0556	NEUTRAL	NA	226	Too-Many
TCGA.AA.A01Q.01A	19	52076522	52196452	13	0.1271	NEUTRAL	NA	3	"SIGLEC14,SIGLEC5,ZNF175"
TCGA.AM.5820	19	52080000	52190558	49	-0.1862	NEUTRAL	NA	3	"SIGLEC14,SIGLEC5,ZNF175"
TCGA.AG.3909.01A	19	52084991	52130351	7	0.109	NEUTRAL	NA	2	"SIGLEC5,ZNF175"
TCGA.AA.A010.01A	19	52129229	52477507	42	0.0682	NEUTRAL	NA	10	"FPR1,FPR2,FPR3,HAS1,SIGLEC14,SIGLEC5,ZNF350,ZNF577,ZNF613,ZNF649"
TCGA.AA.A00N.01A	19	52195801	52705155	60	-0.0891	NEUTRAL	NA	15	"FPR1,FPR2,FPR3,HAS1,PPP2R1A,ZNF350,ZNF432,ZNF577,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF836,ZNF841"
TCGA.AA.A00L.01A	19	52196452	52227166	7	-0.1487	NEUTRAL	NA	1	HAS1
TCGA.AA.A01Q.01A	19	52227166	54483079	244	-0.1385	NEUTRAL	NA	53	"BIRC8,CACNG7,CACNG8,DPRX,ERVV-1,ERVV-2,FPR1,FPR2,FPR3,HAS1,MYADM,NLRP12,PPP2R1A,PRKCG,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF350,ZNF415,ZNF432,ZNF468,ZNF480,ZNF528,ZNF534,ZNF577,ZNF578,ZNF600,ZNF610,ZNF611,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF836,ZNF841,ZNF845,ZNF880"
TCGA.AM.5820	19	52238831	53745567	459	-0.1202	NEUTRAL	NA	38	"ERVV-1,ERVV-2,FPR1,FPR2,FPR3,PPP2R1A,ZNF160,ZNF28,ZNF320,ZNF347,ZNF350,ZNF415,ZNF432,ZNF468,ZNF480,ZNF528,ZNF534,ZNF577,ZNF578,ZNF600,ZNF610,ZNF611,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF665,ZNF677,ZNF701,ZNF766,ZNF808,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF836,ZNF841,ZNF880"
TCGA.AG.4009.01A	19	52249147	52772779	61	0.3371	NEUTRAL	NA	14	"FPR1,FPR2,FPR3,PPP2R1A,ZNF350,ZNF432,ZNF577,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF836,ZNF841"
TCGA.AG.A01W.01A	19	52280132	54831640	645	-0.3073	NEUTRAL	NA	69	"BIRC8,CACNG6,CACNG7,CACNG8,CNOT3,DPRX,ERVV-1,ERVV-2,FPR3,LENG1,LILRA3,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5,MBOAT7,MYADM,NDUFA3,NLRP12,OSCAR,PPP2R1A,PRKCG,PRPF31,RPS9,TARM1,TFPT,TMC4,TSEN34,VN1R2,VN1R4,VSTM1,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF350,ZNF415,ZNF432,ZNF468,ZNF480,ZNF528,ZNF534,ZNF577,ZNF578,ZNF600,ZNF610,ZNF611,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF836,ZNF841,ZNF845,ZNF880"
TCGA.CK.5914.01A	19	52381592	52506876	21	0.2339	NEUTRAL	NA	5	"ZNF350,ZNF577,ZNF613,ZNF615,ZNF649"
TCGA.AG.3909.01A	19	52439384	52471782	8	-0.3351	NEUTRAL	NA	2	"ZNF350,ZNF613"
TCGA.AG.3909.01A	19	52472217	52579249	19	0.0666	NEUTRAL	NA	5	"ZNF350,ZNF432,ZNF614,ZNF615,ZNF841"
TCGA.CK.5914.01A	19	52519054	52570513	12	-0.4958	NEUTRAL	NA	3	"ZNF432,ZNF614,ZNF841"
TCGA.AA.A010.01A	19	52579249	52671221	11	0.239	NEUTRAL	NA	3	"ZNF616,ZNF836,ZNF841"
TCGA.AG.3909.01A	19	52580162	52709185	12	-0.2713	NEUTRAL	NA	4	"PPP2R1A,ZNF616,ZNF836,ZNF841"
TCGA.AA.3693	19	52657048	59095125	1757	0.0384	NEUTRAL	NA	207	Too-Many
TCGA.AG.3909.01A	19	52714471	52723371	6	0.2787	NEUTRAL	NA	1	PPP2R1A
TCGA.AG.4009.01A	19	52785002	52819075	8	-0.2015	NEUTRAL	NA	2	"ZNF480,ZNF766"
TCGA.CK.5914.01A	19	52785002	53384382	55	-0.0696	NEUTRAL	NA	15	"ZNF28,ZNF320,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF701,ZNF766,ZNF808,ZNF83,ZNF880"
TCGA.AG.A00C.01A	19	52817359	53116235	33	0.2862	NEUTRAL	NA	9	"ZNF480,ZNF528,ZNF534,ZNF578,ZNF610,ZNF701,ZNF808,ZNF83,ZNF880"
TCGA.AG.4009.01A	19	52824830	54396531	168	0.3617	NEUTRAL	NA	35	"BIRC8,DPRX,ERVV-1,ERVV-2,MYADM,NLRP12,PRKCG,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845,ZNF880"
TCGA.AA.A00N.01A	19	52852358	52909721	11	-0.1683	NEUTRAL	NA	3	"ZNF528,ZNF610,ZNF880"
TCGA.AA.A010.01A	19	52909721	53384382	36	0.1573	NEUTRAL	NA	11	"ZNF28,ZNF320,ZNF468,ZNF528,ZNF534,ZNF578,ZNF600,ZNF611,ZNF701,ZNF808,ZNF83"
TCGA.AA.3509.01A	19	53056351	53994642	71	0.2048	NEUTRAL	NA	24	"BIRC8,ERVV-1,ERVV-2,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF347,ZNF415,ZNF468,ZNF600,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845"
TCGA.G4.6299	19	53171370	59095125	1579	-0.1188	NEUTRAL	NA	196	Too-Many
TCGA.AA.A00N.01A	19	53343941	53384382	6	-0.0646	NEUTRAL	NA	2	"ZNF320,ZNF468"
TCGA.AG.3909.01A	19	53343941	53384382	6	0.2722	NEUTRAL	NA	2	"ZNF320,ZNF468"
TCGA.AG.A00C.01A	19	53343941	53995292	55	0.1897	NEUTRAL	NA	18	"BIRC8,ERVV-1,ERVV-2,VN1R2,VN1R4,ZNF160,ZNF320,ZNF347,ZNF415,ZNF468,ZNF665,ZNF677,ZNF761,ZNF765,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF845"
TCGA.EI.6883	19	53345320	59095125	1538	-0.2886	NEUTRAL	NA	192	Too-Many
TCGA.AA.3930.01A	19	53432172	53792890	33	0.0898	NEUTRAL	NA	12	"BIRC8,ERVV-1,ERVV-2,VN1R2,VN1R4,ZNF160,ZNF347,ZNF415,ZNF665,ZNF677,ZNF816,ZNF816-ZNF321P"
TCGA.CK.5914.01A	19	53432172	53792890	34	-0.4723	NEUTRAL	NA	12	"BIRC8,ERVV-1,ERVV-2,VN1R2,VN1R4,ZNF160,ZNF347,ZNF415,ZNF665,ZNF677,ZNF816,ZNF816-ZNF321P"
TCGA.CK.6746	19	53719249	59095125	1430	0.0257	NEUTRAL	NA	182	Too-Many
TCGA.AA.3870	19	53723455	59095125	1429	0.1127	NEUTRAL	NA	182	Too-Many
TCGA.AG.3611.01A	19	53740185	53769963	7	-0.1487	NEUTRAL	NA	2	"VN1R2,ZNF677"
TCGA.AM.5820	19	53756192	54352595	185	-0.0814	NEUTRAL	NA	11	"BIRC8,DPRX,NLRP12,VN1R2,VN1R4,ZNF331,ZNF677,ZNF761,ZNF765,ZNF813,ZNF845"
TCGA.AG.3891.01A	19	53761671	53848767	6	-0.0117	NEUTRAL	NA	4	"BIRC8,VN1R2,VN1R4,ZNF845"
TCGA.AG.3611.01A	19	53792890	54135278	18	0.1935	NEUTRAL	NA	6	"BIRC8,ZNF331,ZNF761,ZNF765,ZNF813,ZNF845"
TCGA.CK.5914.01A	19	53844576	54182202	29	0.1385	NEUTRAL	NA	6	"DPRX,ZNF331,ZNF761,ZNF765,ZNF813,ZNF845"
TCGA.AA.3930.01A	19	53855329	54172358	21	0.1468	NEUTRAL	NA	6	"DPRX,ZNF331,ZNF761,ZNF765,ZNF813,ZNF845"
TCGA.AG.3909.01A	19	53901285	54137737	15	-0.1048	NEUTRAL	NA	5	"DPRX,ZNF331,ZNF761,ZNF765,ZNF813"
TCGA.AA.A00N.01A	19	53958677	53995292	6	0.006	NEUTRAL	NA	2	"ZNF761,ZNF813"
TCGA.AA.3509.01A	19	54072539	54177411	10	-0.1832	NEUTRAL	NA	2	"DPRX,ZNF331"
TCGA.AG.3906.01A	19	54135278	54668130	138	0.2582	NEUTRAL	NA	16	"CACNG6,CACNG7,CACNG8,CNOT3,DPRX,LENG1,MYADM,NDUFA3,NLRP12,OSCAR,PRKCG,PRPF31,TARM1,TFPT,TMC4,VSTM1"
TCGA.AA.A00N.01A	19	54169874	54242530	36	0.2913	NEUTRAL	NA	0	None
TCGA.AG.A00C.01A	19	54169874	54245757	38	-0.0227	NEUTRAL	NA	0	None
TCGA.AA.A029.01A	19	54238093	59082320	749	-0.0263	NEUTRAL	NA	172	Too-Many
TCGA.AG.3909.01A	19	54245757	54301449	13	-0.0572	NEUTRAL	NA	1	NLRP12
TCGA.AG.A00C.01A	19	54251835	54265541	8	0.3475	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	19	54259951	54696983	123	-0.212	NEUTRAL	NA	17	"CACNG6,CACNG7,CACNG8,CNOT3,LENG1,MBOAT7,MYADM,NDUFA3,NLRP12,OSCAR,PRKCG,PRPF31,TARM1,TFPT,TMC4,TSEN34,VSTM1"
TCGA.AA.A00A.01A	19	54264355	59082320	688	0.3716	NEUTRAL	NA	172	Too-Many
TCGA.AG.A00C.01A	19	54290871	54327108	13	-0.1688	NEUTRAL	NA	1	NLRP12
TCGA.AA.3509.01A	19	54290871	54725560	132	-0.1793	NEUTRAL	NA	19	"CACNG6,CACNG7,CACNG8,CNOT3,LENG1,LILRB3,MBOAT7,MYADM,NDUFA3,NLRP12,OSCAR,PRKCG,PRPF31,RPS9,TARM1,TFPT,TMC4,TSEN34,VSTM1"
TCGA.AZ.4684.01A	19	54290871	55239095	275	-0.2377	NEUTRAL	NA	36	"CACNG6,CACNG7,CACNG8,CDC42EP5,CNOT3,KIR3DL3,LAIR1,LAIR2,LENG1,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,MBOAT7,MYADM,NDUFA3,NLRP12,OSCAR,PRKCG,PRPF31,RPS9,TARM1,TFPT,TMC4,TSEN34,TTYH1,VSTM1"
TCGA.AA.A00D.01A	19	54290871	56901692	438	0.3728	NEUTRAL	NA	99	"BRSK1,CACNG6,CACNG7,CACNG8,CCDC106,CDC42EP5,CNOT3,COX6B2,DNAAF3,EPN1,EPS8L1,FAM71E2,FCAR,FIZ1,GALP,GP6,HSPBP1,IL11,ISOC2,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR1,LAIR2,LENG1,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,MBOAT7,MYADM,NAT14,NCR1,NDUFA3,NLRP11,NLRP12,NLRP13,NLRP2,NLRP4,NLRP5,NLRP7,NLRP8,NLRP9,OSCAR,PPP1R12C,PPP6R1,PRKCG,PRPF31,PTPRH,RDH13,RFPL4A,RFPL4AL1,RPL28,RPS9,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TARM1,TFPT,TMC4,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,TSEN34,TTYH1,U2AF2,UBE2S,VSTM1,ZNF444,ZNF524,ZNF579,ZNF580,ZNF581,ZNF582,ZNF628,ZNF784,ZNF787,ZNF865,ZSCAN5A,ZSCAN5B"
TCGA.AG.3891.01A	19	54301449	54705314	100	0.2185	NEUTRAL	NA	18	"CACNG6,CACNG7,CACNG8,CNOT3,LENG1,MBOAT7,MYADM,NDUFA3,NLRP12,OSCAR,PRKCG,PRPF31,RPS9,TARM1,TFPT,TMC4,TSEN34,VSTM1"
TCGA.AA.3930.01A	19	54304442	54760754	140	0.1729	NEUTRAL	NA	21	"CACNG6,CACNG7,CACNG8,CNOT3,LENG1,LILRA6,LILRB3,LILRB5,MBOAT7,MYADM,NDUFA3,NLRP12,OSCAR,PRKCG,PRPF31,RPS9,TARM1,TFPT,TMC4,TSEN34,VSTM1"
TCGA.AG.3605.01A	19	54313233	58639195	48	0.0221	NEUTRAL	NA	152	Too-Many
TCGA.AG.3611.01A	19	54376765	54466355	22	0.1798	NEUTRAL	NA	4	"CACNG7,CACNG8,MYADM,PRKCG"
TCGA.AG.A00C.01A	19	54376765	54726547	98	0.3113	NEUTRAL	NA	18	"CACNG6,CACNG7,CACNG8,CNOT3,LENG1,LILRB3,MBOAT7,MYADM,NDUFA3,OSCAR,PRKCG,PRPF31,RPS9,TARM1,TFPT,TMC4,TSEN34,VSTM1"
TCGA.AA.3967.01A	19	54386334	54496105	23	0.2058	NEUTRAL	NA	4	"CACNG6,CACNG7,CACNG8,PRKCG"
TCGA.AG.4009.01A	19	54401182	54502871	17	-0.2481	NEUTRAL	NA	4	"CACNG6,CACNG7,CACNG8,PRKCG"
TCGA.AA.A00L.01A	19	54407862	54515168	16	0.0462	NEUTRAL	NA	4	"CACNG6,CACNG7,CACNG8,PRKCG"
TCGA.AG.3909.01A	19	54407862	54598996	21	0.2103	NEUTRAL	NA	7	"CACNG6,CACNG7,CACNG8,OSCAR,PRKCG,TARM1,VSTM1"
TCGA.AA.A00N.01A	19	54418567	54617805	34	0.0108	NEUTRAL	NA	8	"CACNG6,CACNG7,CACNG8,NDUFA3,OSCAR,TARM1,TFPT,VSTM1"
TCGA.AM.5820	19	54431221	54604821	19	-0.3241	NEUTRAL	NA	6	"CACNG6,CACNG7,CACNG8,OSCAR,TARM1,VSTM1"
TCGA.AA.A01Q.01A	19	54502871	54617805	22	-0.0505	NEUTRAL	NA	6	"CACNG6,NDUFA3,OSCAR,TARM1,TFPT,VSTM1"
TCGA.AA.A010.01A	19	54515168	54632400	34	0.2038	NEUTRAL	NA	7	"CACNG6,NDUFA3,OSCAR,PRPF31,TARM1,TFPT,VSTM1"
TCGA.AG.3611.01A	19	54566918	54646651	24	0.2673	NEUTRAL	NA	7	"CNOT3,NDUFA3,OSCAR,PRPF31,TARM1,TFPT,VSTM1"
TCGA.AG.3909.01A	19	54600200	54725560	66	-0.4475	NEUTRAL	NA	11	"CNOT3,LENG1,LILRB3,MBOAT7,NDUFA3,OSCAR,PRPF31,RPS9,TFPT,TMC4,TSEN34"
TCGA.AM.5820	19	54614589	59095125	1198	0.0044	NEUTRAL	NA	162	Too-Many
TCGA.A6.3808.01A	19	54617805	54627861	8	-0.0876	NEUTRAL	NA	2	"PRPF31,TFPT"
TCGA.AA.A01Q.01A	19	54618542	54669136	36	-0.5118	NEUTRAL	NA	5	"CNOT3,LENG1,PRPF31,TFPT,TMC4"
TCGA.AG.3611.01A	19	54647115	54659029	11	-0.2046	NEUTRAL	NA	1	CNOT3
TCGA.A6.3808.01A	19	54649226	55174916	183	-0.3528	NEUTRAL	NA	23	"CDC42EP5,CNOT3,LAIR1,LAIR2,LENG1,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,MBOAT7,RPS9,TMC4,TSEN34,TTYH1"
TCGA.AG.3611.01A	19	54659418	59082320	621	0.1918	NEUTRAL	NA	160	Too-Many
TCGA.AG.4009.01A	19	54668130	54720920	18	-0.0741	NEUTRAL	NA	5	"LILRB3,MBOAT7,RPS9,TMC4,TSEN34"
TCGA.AA.A00N.01A	19	54668130	54722950	25	-0.3891	NEUTRAL	NA	5	"LILRB3,MBOAT7,RPS9,TMC4,TSEN34"
TCGA.AA.A010.01A	19	54668130	54722950	25	-0.0485	NEUTRAL	NA	5	"LILRB3,MBOAT7,RPS9,TMC4,TSEN34"
TCGA.AA.A017.01A	19	54668130	55284873	134	0.2068	NEUTRAL	NA	24	"CDC42EP5,KIR2DL1,KIR2DL3,KIR3DL3,LAIR1,LAIR2,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,MBOAT7,RPS9,TMC4,TSEN34,TTYH1"
TCGA.AG.3906.01A	19	54669136	54850054	68	-0.2037	NEUTRAL	NA	11	"LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5,MBOAT7,RPS9,TMC4,TSEN34"
TCGA.AA.A01Q.01A	19	54671847	54940423	82	-0.0231	NEUTRAL	NA	13	"LAIR1,LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5,MBOAT7,RPS9,TMC4,TSEN34,TTYH1"
TCGA.AA.3967.01A	19	54696983	55424016	180	0.3582	NEUTRAL	NA	28	"CDC42EP5,FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR1,LAIR2,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,NCR1,RPS9,TSEN34,TTYH1"
TCGA.5M.AAT4	19	54697713	56150470	302	0.2639	NEUTRAL	NA	64	"BRSK1,CDC42EP5,COX6B2,DNAAF3,EPS8L1,FAM71E2,FCAR,FIZ1,GP6,HSPBP1,IL11,ISOC2,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR1,LAIR2,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,NAT14,NCR1,NLRP2,NLRP7,PPP1R12C,PPP6R1,PTPRH,RDH13,RPL28,RPS9,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,TSEN34,TTYH1,UBE2S,ZNF524,ZNF579,ZNF628,ZNF784,ZNF865"
TCGA.CK.5914.01A	19	54705015	54760754	32	0.3379	NEUTRAL	NA	4	"LILRA6,LILRB3,LILRB5,RPS9"
TCGA.AG.3891.01A	19	54710145	54932424	64	-0.0333	NEUTRAL	NA	10	"LAIR1,LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5,RPS9,TTYH1"
TCGA.AG.A00H.01A	19	54710145	55179034	126	0.006	NEUTRAL	NA	18	"CDC42EP5,LAIR1,LAIR2,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,RPS9,TTYH1"
TCGA.AG.4009.01A	19	54722160	54726138	7	-0.4216	NEUTRAL	NA	1	LILRB3
TCGA.AA.A02K.01A	19	54723954	54802965	38	-0.405	NEUTRAL	NA	5	"LILRA3,LILRA6,LILRB2,LILRB3,LILRB5"
TCGA.AA.A00K.01A	19	54724405	54870051	47	0.2868	NEUTRAL	NA	8	"LAIR1,LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5"
TCGA.AG.4009.01A	19	54726547	54947239	62	0.3737	NEUTRAL	NA	9	"LAIR1,LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5,TTYH1"
TCGA.AA.3509.01A	19	54735534	59082320	812	-0.0703	NEUTRAL	NA	154	Too-Many
TCGA.AG.A00C.01A	19	54742787	54930253	50	-0.2417	NEUTRAL	NA	9	"LAIR1,LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5,TTYH1"
TCGA.AG.A014.01A	19	54742787	55363421	153	-0.0933	NEUTRAL	NA	24	"CDC42EP5,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR1,LAIR2,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,TTYH1"
TCGA.AA.3930.01A	19	54782135	54803504	10	-0.2314	NEUTRAL	NA	2	"LILRA3,LILRB2"
TCGA.AA.A02K.01A	19	54803450	55014847	48	-0.076	NEUTRAL	NA	9	"CDC42EP5,LAIR1,LAIR2,LENG8,LENG9,LILRA3,LILRA4,LILRA5,TTYH1"
TCGA.AA.3930.01A	19	54803873	54850054	13	0.1508	NEUTRAL	NA	3	"LILRA3,LILRA4,LILRA5"
TCGA.AA.3980.01A	19	54818657	55179034	102	-0.217	NEUTRAL	NA	12	"CDC42EP5,LAIR1,LAIR2,LENG8,LENG9,LILRA1,LILRA2,LILRA4,LILRA5,LILRB1,LILRB4,TTYH1"
TCGA.AA.A01D.01A	19	54822566	54872471	15	-0.0061	NEUTRAL	NA	3	"LAIR1,LILRA4,LILRA5"
TCGA.AG.3909.01A	19	54844795	55021656	44	-0.1812	NEUTRAL	NA	7	"CDC42EP5,LAIR1,LAIR2,LENG8,LENG9,LILRA4,TTYH1"
TCGA.CK.5914.01A	19	54849295	54976257	45	-0.1908	NEUTRAL	NA	6	"CDC42EP5,LAIR1,LENG8,LENG9,LILRA4,TTYH1"
TCGA.AG.A01W.01A	19	54853227	54874872	14	-0.3805	NEUTRAL	NA	1	LAIR1
TCGA.AG.3906.01A	19	54870051	54947239	15	0.0257	NEUTRAL	NA	2	"LAIR1,TTYH1"
TCGA.AG.A01W.01A	19	54875248	54892354	12	0.2743	NEUTRAL	NA	1	LAIR1
TCGA.AA.3930.01A	19	54875852	54927139	4	-0.0538	NEUTRAL	NA	2	"LAIR1,TTYH1"
TCGA.AG.A01W.01A	19	54895713	54903756	7	-0.2166	NEUTRAL	NA	0	None
TCGA.AA.A010.01A	19	54927139	54947239	14	-0.4133	NEUTRAL	NA	1	TTYH1
TCGA.AA.3930.01A	19	54927916	54964684	17	0.3479	NEUTRAL	NA	2	"LENG8,TTYH1"
TCGA.AA.A01D.01A	19	54930253	59082320	549	0.1745	NEUTRAL	NA	146	Too-Many
TCGA.AG.3891.01A	19	54937671	55053661	33	0.2688	NEUTRAL	NA	5	"CDC42EP5,LAIR2,LENG8,LENG9,TTYH1"
TCGA.AA.A01Q.01A	19	54941011	54973293	21	-0.4422	NEUTRAL	NA	3	"LENG8,LENG9,TTYH1"
TCGA.AA.A00L.01A	19	54962450	55014052	15	-0.0286	NEUTRAL	NA	4	"CDC42EP5,LAIR2,LENG8,LENG9"
TCGA.AA.A00K.01A	19	54963780	55179034	49	0.2372	NEUTRAL	NA	8	"CDC42EP5,LAIR2,LENG8,LENG9,LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.AA.3930.01A	19	54965592	55054520	25	-0.0598	NEUTRAL	NA	4	"CDC42EP5,LAIR2,LENG8,LENG9"
TCGA.AA.A01Q.01A	19	54976257	55143457	24	0.1648	NEUTRAL	NA	5	"CDC42EP5,LAIR2,LILRA1,LILRA2,LILRB1"
TCGA.AG.A01W.01A	19	54976794	55003455	18	0.0174	NEUTRAL	NA	1	CDC42EP5
TCGA.AA.A010.01A	19	55009369	55053661	12	0.2835	NEUTRAL	NA	1	LAIR2
TCGA.AG.A01W.01A	19	55013410	55031884	12	0.1045	NEUTRAL	NA	1	LAIR2
TCGA.AG.3906.01A	19	55014052	55053661	11	-0.2687	NEUTRAL	NA	1	LAIR2
TCGA.AG.A00C.01A	19	55014052	55385664	85	-0.2085	NEUTRAL	NA	13	"FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR2,LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.AA.A02K.01A	19	55019087	55365155	79	-0.3207	NEUTRAL	NA	12	"KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR2,LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.AG.3909.01A	19	55043931	55147893	32	0.3552	NEUTRAL	NA	3	"LILRA1,LILRA2,LILRB1"
TCGA.AG.3891.01A	19	55054520	55370471	75	-0.1297	NEUTRAL	NA	11	"KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.AG.A01W.01A	19	55056289	55560548	112	-0.3594	NEUTRAL	NA	17	"FCAR,GP6,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LILRA1,LILRA2,LILRB1,LILRB4,NCR1,NLRP2,NLRP7,RDH13"
TCGA.AA.3930.01A	19	55085268	55147322	26	-0.4453	NEUTRAL	NA	3	"LILRA1,LILRA2,LILRB1"
TCGA.AG.3906.01A	19	55098425	55179034	30	-0.4912	NEUTRAL	NA	4	"LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.AA.3930.01A	19	55147893	55570476	87	0.295	NEUTRAL	NA	15	"FCAR,GP6,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LILRB1,LILRB4,NCR1,NLRP2,NLRP7,RDH13"
TCGA.AA.3844	19	55225834	55326612	13	-0.2981	NEUTRAL	NA	4	"KIR2DL1,KIR2DL3,KIR2DL4,KIR3DL3"
TCGA.AA.3858	19	55238392	59095125	1044	0.0692	NEUTRAL	NA	137	Too-Many
TCGA.AA.3980.01A	19	55246668	55341625	24	0.2561	NEUTRAL	NA	5	"KIR2DL1,KIR2DL3,KIR2DL4,KIR3DL1,KIR3DL3"
TCGA.AG.A015.01A	19	55246668	55386717	39	-0.0549	NEUTRAL	NA	8	"FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3"
TCGA.AA.A01Q.01A	19	55246668	55400967	21	0.1461	NEUTRAL	NA	8	"FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3"
TCGA.AG.3906.01A	19	55246668	55424016	47	-0.1018	NEUTRAL	NA	9	"FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,NCR1"
TCGA.AG.A00H.01A	19	55281233	55363421	22	-0.0466	NEUTRAL	NA	5	"KIR2DL1,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2"
TCGA.AG.4009.01A	19	55281233	55567981	77	0.3677	NEUTRAL	NA	11	"FCAR,GP6,KIR2DL1,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,NCR1,NLRP2,NLRP7,RDH13"
TCGA.AA.A017.01A	19	55286820	58858722	465	-0.1874	NEUTRAL	NA	120	Too-Many
TCGA.AG.A016.01A	19	55299748	55378129	24	-0.2161	NEUTRAL	NA	4	"KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2"
TCGA.CK.4948.01B	19	55315030	55350921	11	0.1599	NEUTRAL	NA	3	"KIR2DL4,KIR2DS4,KIR3DL1"
TCGA.AG.A025.01A	19	55320215	58578080	478	-0.2698	NEUTRAL	NA	112	Too-Many
TCGA.G4.6303	19	55324040	59095125	1035	-0.4567	NEUTRAL	NA	134	Too-Many
TCGA.AG.A011.01A	19	55325103	59082320	528	-0.2653	NEUTRAL	NA	134	Too-Many
TCGA.AZ.4684.01A	19	55341625	56918421	362	-0.2503	NEUTRAL	NA	61	"BRSK1,CCDC106,COX6B2,DNAAF3,EPN1,EPS8L1,FAM71E2,FCAR,FIZ1,GALP,GP6,HSPBP1,IL11,ISOC2,KIR2DS4,KIR3DL1,KIR3DL2,NAT14,NCR1,NLRP11,NLRP13,NLRP2,NLRP4,NLRP5,NLRP7,NLRP8,NLRP9,PPP1R12C,PPP6R1,PTPRH,RDH13,RFPL4A,RFPL4AL1,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,U2AF2,UBE2S,ZNF444,ZNF524,ZNF579,ZNF580,ZNF581,ZNF582,ZNF583,ZNF628,ZNF784,ZNF787,ZNF865,ZSCAN5A,ZSCAN5B"
TCGA.AA.3980.01A	19	55346452	55592085	63	-0.1772	NEUTRAL	NA	9	"EPS8L1,FCAR,GP6,KIR2DS4,KIR3DL2,NCR1,NLRP2,NLRP7,RDH13"
TCGA.AA.3844	19	55347962	56427343	257	0.2845	NEUTRAL	NA	51	"BRSK1,CCDC106,COX6B2,DNAAF3,EPN1,EPS8L1,FAM71E2,FCAR,FIZ1,GP6,HSPBP1,IL11,ISOC2,KIR2DS4,KIR3DL2,NAT14,NCR1,NLRP11,NLRP13,NLRP2,NLRP4,NLRP7,NLRP9,PPP1R12C,PPP6R1,PTPRH,RDH13,RFPL4A,RFPL4AL1,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,U2AF2,UBE2S,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.AY.5543	19	55348690	59095125	1021	-0.0451	NEUTRAL	NA	132	Too-Many
TCGA.CI.6622	19	55363895	59095125	1030	-0.0195	NEUTRAL	NA	131	Too-Many
TCGA.AG.A014.01A	19	55365172	59082320	511	0.3253	NEUTRAL	NA	131	Too-Many
TCGA.AG.3891.01A	19	55377208	55424016	14	0.2	NEUTRAL	NA	3	"FCAR,KIR3DL2,NCR1"
TCGA.CK.4948.01B	19	55377208	56369072	287	-0.4682	NEUTRAL	NA	49	"BRSK1,CCDC106,COX6B2,DNAAF3,EPN1,EPS8L1,FAM71E2,FCAR,FIZ1,GP6,HSPBP1,IL11,ISOC2,KIR3DL2,NAT14,NCR1,NLRP11,NLRP2,NLRP4,NLRP7,NLRP9,PPP1R12C,PPP6R1,PTPRH,RDH13,RFPL4A,RFPL4AL1,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,U2AF2,UBE2S,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.AY.A54L.01A	19	55377208	59082320	642	-0.0918	NEUTRAL	NA	131	Too-Many
TCGA.AA.A02K.01A	19	55377209	59082351	645	-0.0279	NEUTRAL	NA	131	Too-Many
TCGA.NH.A50U	19	55378007	59093463	1027	-0.4618	NEUTRAL	NA	131	Too-Many
TCGA.4T.AA8H	19	55378007	59095125	1028	0.3204	NEUTRAL	NA	131	Too-Many
TCGA.AA.A00N.01A	19	55385664	55417474	6	0.0128	NEUTRAL	NA	1	FCAR
TCGA.AG.A00C.01A	19	55386717	55420556	7	0.1189	NEUTRAL	NA	2	"FCAR,NCR1"
TCGA.CK.5914.01A	19	55386717	55420556	7	-0.0855	NEUTRAL	NA	2	"FCAR,NCR1"
TCGA.AG.A015.01A	19	55396666	59067419	494	0.2576	NEUTRAL	NA	129	Too-Many
TCGA.AA.A01Q.01A	19	55417474	55623817	56	-0.4651	NEUTRAL	NA	7	"EPS8L1,GP6,NCR1,NLRP2,NLRP7,PPP1R12C,RDH13"
TCGA.AG.3906.01A	19	55435066	55512087	23	0.3366	NEUTRAL	NA	2	"NLRP2,NLRP7"
TCGA.A6.3808.01A	19	55435066	55918865	182	-0.1205	NEUTRAL	NA	24	"BRSK1,COX6B2,DNAAF3,EPS8L1,FAM71E2,GP6,HSPBP1,IL11,NLRP2,NLRP7,PPP1R12C,PPP6R1,PTPRH,RDH13,RPL28,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,UBE2S"
TCGA.AA.3666	19	55524812	58290008	817	0.19	NEUTRAL	NA	93	"AURKC,BRSK1,CCDC106,COX6B2,DNAAF3,DUXA,EPN1,EPS8L1,FAM71E2,FIZ1,GALP,GP6,HSPBP1,IL11,ISOC2,NAT14,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,PEG3,PPP1R12C,PPP6R1,PTPRH,RDH13,RFPL4A,RFPL4AL1,RPL28,SBK2,SBK3,SHISA7,SMIM17,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,U2AF2,UBE2S,USP29,VN1R1,ZFP28,ZIK1,ZIM2,ZIM3,ZNF134,ZNF154,ZNF17,ZNF211,ZNF264,ZNF304,ZNF416,ZNF419,ZNF444,ZNF460,ZNF470,ZNF471,ZNF524,ZNF530,ZNF543,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF579,ZNF580,ZNF581,ZNF582,ZNF583,ZNF586,ZNF628,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF784,ZNF787,ZNF805,ZNF835,ZNF865,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.AG.3906.01A	19	55525753	55658293	40	-0.2629	NEUTRAL	NA	5	"EPS8L1,GP6,PPP1R12C,RDH13,TNNT1"
TCGA.AG.3891.01A	19	55525753	55684845	56	0.0122	NEUTRAL	NA	8	"DNAAF3,EPS8L1,GP6,PPP1R12C,RDH13,SYT5,TNNI3,TNNT1"
TCGA.AA.A00L.01A	19	55525753	55696840	44	0.1727	NEUTRAL	NA	9	"DNAAF3,EPS8L1,GP6,PPP1R12C,PTPRH,RDH13,SYT5,TNNI3,TNNT1"
TCGA.AG.A00C.01A	19	55525753	56223774	146	0.2991	NEUTRAL	NA	40	"BRSK1,CCDC106,COX6B2,DNAAF3,EPN1,EPS8L1,FAM71E2,FIZ1,GP6,HSPBP1,IL11,ISOC2,NAT14,NLRP9,PPP1R12C,PPP6R1,PTPRH,RDH13,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,U2AF2,UBE2S,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.AA.A00N.01A	19	55536536	55559991	8	0.3013	NEUTRAL	NA	2	"GP6,RDH13"
TCGA.CK.5914.01A	19	55538955	55693082	70	-0.0825	NEUTRAL	NA	9	"DNAAF3,EPS8L1,GP6,PPP1R12C,PTPRH,RDH13,SYT5,TNNI3,TNNT1"
TCGA.AA.A010.01A	19	55567981	55598629	17	-0.2097	NEUTRAL	NA	2	"EPS8L1,RDH13"
TCGA.AA.A00N.01A	19	55567981	55702816	69	-0.4195	NEUTRAL	NA	8	"DNAAF3,EPS8L1,PPP1R12C,PTPRH,RDH13,SYT5,TNNI3,TNNT1"
TCGA.AG.A01W.01A	19	55572595	55604538	18	0.2327	NEUTRAL	NA	3	"EPS8L1,PPP1R12C,RDH13"
TCGA.AA.3930.01A	19	55587722	55657719	34	-0.3446	NEUTRAL	NA	3	"EPS8L1,PPP1R12C,TNNT1"
TCGA.AG.4009.01A	19	55589385	55645198	21	-0.4791	NEUTRAL	NA	3	"EPS8L1,PPP1R12C,TNNT1"
TCGA.AA.A00Q.01A	19	55593417	55699403	39	0.1601	NEUTRAL	NA	7	"DNAAF3,EPS8L1,PPP1R12C,PTPRH,SYT5,TNNI3,TNNT1"
TCGA.AG.A01W.01A	19	55608462	56147590	120	-0.2617	NEUTRAL	NA	31	"BRSK1,COX6B2,DNAAF3,FAM71E2,FIZ1,HSPBP1,IL11,ISOC2,NAT14,PPP1R12C,PPP6R1,PTPRH,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,UBE2S,ZNF524,ZNF579,ZNF628,ZNF784,ZNF865"
TCGA.AA.3980.01A	19	55610089	59082320	550	-0.1704	NEUTRAL	NA	123	Too-Many
TCGA.AA.A01Q.01A	19	55644204	55677194	15	0.1659	NEUTRAL	NA	3	"DNAAF3,TNNI3,TNNT1"
TCGA.AG.4009.01A	19	55648423	55676688	18	0.364	NEUTRAL	NA	3	"DNAAF3,TNNI3,TNNT1"
TCGA.AA.A010.01A	19	55657719	55666052	6	-0.3109	NEUTRAL	NA	2	"TNNI3,TNNT1"
TCGA.AA.3930.01A	19	55658293	59082320	534	0.0967	NEUTRAL	NA	122	Too-Many
TCGA.AG.3906.01A	19	55663145	55798334	51	0.139	NEUTRAL	NA	8	"BRSK1,DNAAF3,HSPBP1,PPP6R1,PTPRH,SYT5,TMEM86B,TNNI3"
TCGA.AA.A010.01A	19	55667519	55742717	43	0.2118	NEUTRAL	NA	6	"DNAAF3,PPP6R1,PTPRH,SYT5,TMEM86B,TNNI3"
TCGA.AG.4009.01A	19	55677194	55699403	15	0.0033	NEUTRAL	NA	3	"DNAAF3,PTPRH,SYT5"
TCGA.AA.A01Q.01A	19	55684845	55739998	28	-0.3288	NEUTRAL	NA	3	"PTPRH,SYT5,TMEM86B"
TCGA.AG.3891.01A	19	55685877	55718025	21	0.3667	NEUTRAL	NA	2	"PTPRH,SYT5"
TCGA.AG.3909.01A	19	55689527	56133129	87	-0.0364	NEUTRAL	NA	27	"BRSK1,COX6B2,FAM71E2,FIZ1,HSPBP1,IL11,ISOC2,NAT14,PPP6R1,PTPRH,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,UBE2S,ZNF524,ZNF579,ZNF628,ZNF784,ZNF865"
TCGA.AG.4009.01A	19	55702816	55752589	18	0.3724	NEUTRAL	NA	3	"PPP6R1,PTPRH,TMEM86B"
TCGA.AG.3891.01A	19	55718471	55788961	17	-0.1393	NEUTRAL	NA	4	"HSPBP1,PPP6R1,PTPRH,TMEM86B"
TCGA.AA.A00N.01A	19	55738537	56223774	139	-0.4839	NEUTRAL	NA	31	"BRSK1,CCDC106,COX6B2,EPN1,FAM71E2,FIZ1,HSPBP1,IL11,ISOC2,NAT14,NLRP9,PPP6R1,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,TMEM150B,TMEM190,TMEM238,TMEM86B,U2AF2,UBE2S,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.AA.A00L.01A	19	55739529	56185251	68	0.143	NEUTRAL	NA	29	"BRSK1,CCDC106,COX6B2,FAM71E2,FIZ1,HSPBP1,IL11,ISOC2,NAT14,PPP6R1,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,TMEM150B,TMEM190,TMEM238,TMEM86B,U2AF2,UBE2S,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.CK.5914.01A	19	55739998	56363446	156	-0.1178	NEUTRAL	NA	35	"BRSK1,CCDC106,COX6B2,EPN1,FAM71E2,FIZ1,HSPBP1,IL11,ISOC2,NAT14,NLRP11,NLRP4,NLRP9,PPP6R1,RFPL4A,RFPL4AL1,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,TMEM150B,TMEM190,TMEM238,TMEM86B,U2AF2,UBE2S,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.AG.4009.01A	19	55753542	56153878	55	-0.3854	NEUTRAL	NA	25	"BRSK1,COX6B2,FAM71E2,FIZ1,HSPBP1,IL11,ISOC2,NAT14,PPP6R1,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,TMEM150B,TMEM190,TMEM238,UBE2S,ZNF524,ZNF579,ZNF580,ZNF628,ZNF784,ZNF865"
TCGA.AA.A01Q.01A	19	55824178	56029710	43	-0.0955	NEUTRAL	NA	14	"COX6B2,FAM71E2,IL11,ISOC2,NAT14,RPL28,SHISA7,SSC5D,SUV420H2,TMEM150B,TMEM190,TMEM238,UBE2S,ZNF628"
TCGA.A6.3808.01A	19	55953513	56220230	64	-0.2168	NEUTRAL	NA	18	"CCDC106,EPN1,FIZ1,ISOC2,NAT14,NLRP9,SBK2,SBK3,SHISA7,SSC5D,U2AF2,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.AG.3891.01A	19	56011143	59082320	383	0.1815	NEUTRAL	NA	100	"A1BG,AURKC,C19orf18,CCDC106,CHMP2A,DUXA,EPN1,FIZ1,GALP,MZF1,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,PEG3,RFPL4A,RFPL4AL1,RNF225,RPS5,SBK2,SBK3,SLC27A5,SMIM17,SSC5D,TRIM28,U2AF2,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF524,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF579,ZNF580,ZNF581,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF784,ZNF787,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZNF865,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.AA.A010.01A	19	56029710	56047362	4	0.3691	NEUTRAL	NA	2	"SBK2,SSC5D"
TCGA.AG.3906.01A	19	56153878	56569564	86	0.0134	NEUTRAL	NA	13	"CCDC106,EPN1,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,RFPL4A,RFPL4AL1,U2AF2,ZNF580,ZNF581"
TCGA.AG.A01W.01A	19	56154196	56177332	10	0.3768	NEUTRAL	NA	4	"CCDC106,U2AF2,ZNF580,ZNF581"
TCGA.5M.AAT4	19	56156446	59095125	881	-0.0695	NEUTRAL	NA	91	"A1BG,AURKC,C19orf18,CCDC106,CHMP2A,DUXA,EPN1,GALP,MZF1,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,PEG3,RFPL4A,RFPL4AL1,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,U2AF2,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF581,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF787,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.AF.3914.01A	19	56166409	59082320	380	-0.1448	NEUTRAL	NA	89	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,EPN1,GALP,MZF1,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,PEG3,RFPL4A,RFPL4AL1,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,U2AF2,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF787,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.AA.A010.01A	19	56196732	56235299	14	-0.0233	NEUTRAL	NA	2	"EPN1,NLRP9"
TCGA.AA.A01Q.01A	19	56196732	56614476	53	0.3265	NEUTRAL	NA	10	"EPN1,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,RFPL4A,RFPL4AL1,ZNF787"
TCGA.AG.A01W.01A	19	56208779	56210933	4	-0.3047	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	56212132	56226932	13	0.238	NEUTRAL	NA	1	NLRP9
TCGA.AG.A016.01A	19	56220230	56273915	11	-0.1629	NEUTRAL	NA	2	"NLRP9,RFPL4A"
TCGA.AG.A01W.01A	19	56229001	56381524	27	-0.3686	NEUTRAL	NA	5	"NLRP11,NLRP4,NLRP9,RFPL4A,RFPL4AL1"
TCGA.AG.A00C.01A	19	56235299	56531672	52	-0.1186	NEUTRAL	NA	8	"NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,RFPL4A,RFPL4AL1"
TCGA.AG.3909.01A	19	56296941	56369072	11	0.2187	NEUTRAL	NA	2	"NLRP11,NLRP4"
TCGA.AG.A016.01A	19	56296941	59082320	329	0.2484	NEUTRAL	NA	84	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,GALP,MZF1,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF787,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.A6.3808.01A	19	56300141	56511036	39	0.2974	NEUTRAL	NA	4	"NLRP11,NLRP13,NLRP4,NLRP8"
TCGA.AG.3898	19	56309149	59095125	844	0.0371	NEUTRAL	NA	84	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,GALP,MZF1,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF787,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.CK.4948.01B	19	56372703	56459247	19	-0.2034	NEUTRAL	NA	3	"NLRP13,NLRP4,NLRP8"
TCGA.AA.A010.01A	19	56382143	56435890	13	0.1333	NEUTRAL	NA	2	"NLRP13,NLRP4"
TCGA.AG.A01W.01A	19	56420115	56430602	5	0.2294	NEUTRAL	NA	1	NLRP13
TCGA.AA.3844	19	56436839	59095125	773	0.0484	NEUTRAL	NA	82	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,GALP,MZF1,NLRP13,NLRP5,NLRP8,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF787,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.CK.4948.01B	19	56463853	59082320	338	-0.4689	NEUTRAL	NA	81	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,GALP,MZF1,NLRP5,NLRP8,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF787,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.AA.A010.01A	19	56481891	56490709	4	0.1659	NEUTRAL	NA	1	NLRP8
TCGA.CK.5914.01A	19	56511036	56539641	9	-0.3884	NEUTRAL	NA	1	NLRP5
TCGA.AG.A00C.01A	19	56538232	56599340	12	-0.3855	NEUTRAL	NA	2	"NLRP5,ZNF787"
TCGA.AG.A01W.01A	19	56540226	56715142	44	-0.2905	NEUTRAL	NA	5	"GALP,NLRP5,ZNF444,ZNF787,ZSCAN5B"
TCGA.AG.4009.01A	19	56561777	56969472	34	0.0384	NEUTRAL	NA	9	"GALP,NLRP5,ZNF444,ZNF582,ZNF583,ZNF667,ZNF787,ZSCAN5A,ZSCAN5B"
TCGA.AA.A00N.01A	19	56569564	56703991	17	-0.2095	NEUTRAL	NA	5	"GALP,NLRP5,ZNF444,ZNF787,ZSCAN5B"
TCGA.AG.A00C.01A	19	56614476	57029799	34	0.2361	NEUTRAL	NA	9	"GALP,ZNF444,ZNF471,ZNF582,ZNF583,ZNF667,ZNF787,ZSCAN5A,ZSCAN5B"
TCGA.AA.A01Q.01A	19	56658234	59082320	282	-0.0993	NEUTRAL	NA	78	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,GALP,MZF1,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.AG.A01W.01A	19	56722753	56768362	7	0.3364	NEUTRAL	NA	1	ZSCAN5A
TCGA.AG.3906.01A	19	56732895	58846121	216	-0.1184	NEUTRAL	NA	59	"AURKC,C19orf18,DUXA,PEG3,SMIM17,USP29,VN1R1,ZFP28,ZIK1,ZIM2,ZIM3,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF460,ZNF470,ZNF471,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF835,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4,ZSCAN5A"
TCGA.AG.A01W.01A	19	56888255	57246890	46	0.0053	NEUTRAL	NA	9	"SMIM17,ZFP28,ZNF470,ZNF471,ZNF582,ZNF583,ZNF667,ZNF71,ZNF835"
TCGA.AA.A010.01A	19	56895213	57022856	15	-0.0333	NEUTRAL	NA	4	"ZNF471,ZNF582,ZNF583,ZNF667"
TCGA.CK.5914.01A	19	56895213	59082320	292	-0.2147	NEUTRAL	NA	74	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AZ.4684.01A	19	56925278	57293289	33	0.2611	NEUTRAL	NA	9	"SMIM17,ZFP28,ZIM2,ZNF470,ZNF471,ZNF583,ZNF667,ZNF71,ZNF835"
TCGA.AG.3909.01A	19	56934218	56973622	7	-0.1417	NEUTRAL	NA	2	"ZNF583,ZNF667"
TCGA.AA.A00N.01A	19	56952502	56973622	5	-0.1899	NEUTRAL	NA	1	ZNF667
TCGA.DM.A28M.01A	19	56952502	59082320	283	-0.2296	NEUTRAL	NA	72	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZFP28,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF470,ZNF471,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.EI.7004	19	56968313	57210942	100	-0.3282	NEUTRAL	NA	7	"SMIM17,ZFP28,ZNF470,ZNF471,ZNF667,ZNF71,ZNF835"
TCGA.AA.A010.01A	19	57081609	57653905	24	-0.3466	NEUTRAL	NA	8	"PEG3,SMIM17,USP29,ZIM2,ZIM3,ZNF470,ZNF71,ZNF835"
TCGA.AG.4009.01A	19	57081609	57966744	72	0.2359	NEUTRAL	NA	20	"AURKC,DUXA,PEG3,SMIM17,USP29,VN1R1,ZIM2,ZIM3,ZNF17,ZNF264,ZNF304,ZNF460,ZNF470,ZNF543,ZNF547,ZNF548,ZNF71,ZNF749,ZNF805,ZNF835"
TCGA.AG.A00C.01A	19	57089681	57769639	42	0.2318	NEUTRAL	NA	12	"AURKC,DUXA,PEG3,SMIM17,USP29,ZIM2,ZIM3,ZNF264,ZNF470,ZNF71,ZNF805,ZNF835"
TCGA.AA.3667	19	57119433	59095125	550	0.0216	NEUTRAL	NA	68	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AA.A00N.01A	19	57132629	59082320	261	-0.4847	NEUTRAL	NA	68	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.EI.7004	19	57211510	59095125	513	0.0343	NEUTRAL	NA	65	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.SS.A7HO	19	57217806	59095125	513	-0.0061	NEUTRAL	NA	65	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AG.A01W.01A	19	57253834	59088344	235	-0.3132	NEUTRAL	NA	65	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AG.3909.01A	19	57286005	57966744	66	-0.1725	NEUTRAL	NA	16	"AURKC,DUXA,PEG3,USP29,VN1R1,ZIM2,ZIM3,ZNF17,ZNF264,ZNF304,ZNF460,ZNF543,ZNF547,ZNF548,ZNF749,ZNF805"
TCGA.AZ.4684.01A	19	57301209	59082320	255	-0.2169	NEUTRAL	NA	65	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AA.3673	19	57482752	59095125	436	0.0139	NEUTRAL	NA	63	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AG.A026	19	57565591	59095125	396	-0.0889	NEUTRAL	NA	63	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AG.A00C.01A	19	57771538	57910136	20	-0.1038	NEUTRAL	NA	6	"ZNF304,ZNF460,ZNF543,ZNF547,ZNF548,ZNF805"
TCGA.AG.A00C.01A	19	57922666	58198342	48	0.3013	NEUTRAL	NA	15	"VN1R1,ZIK1,ZNF134,ZNF17,ZNF211,ZNF416,ZNF419,ZNF530,ZNF549,ZNF550,ZNF551,ZNF749,ZNF772,ZNF773,ZSCAN4"
TCGA.A6.3808.01A	19	57929233	58797424	134	-0.1523	NEUTRAL	NA	35	"C19orf18,VN1R1,ZIK1,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF274,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF530,ZNF544,ZNF549,ZNF550,ZNF551,ZNF552,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF814,ZSCAN1,ZSCAN18,ZSCAN4"
TCGA.AG.4009.01A	19	57984621	58004765	11	-0.4705	NEUTRAL	NA	2	"ZNF419,ZNF772"
TCGA.AG.4009.01A	19	58015973	58512573	73	0.3495	NEUTRAL	NA	23	"C19orf18,ZIK1,ZNF134,ZNF154,ZNF211,ZNF256,ZNF416,ZNF417,ZNF418,ZNF530,ZNF549,ZNF550,ZNF551,ZNF552,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF773,ZNF776,ZNF814,ZSCAN4"
TCGA.AG.A00C.01A	19	58212996	58287861	13	-0.483	NEUTRAL	NA	4	"ZNF154,ZNF586,ZNF671,ZNF776"
TCGA.AG.A00C.01A	19	58290102	58427667	13	-0.1247	NEUTRAL	NA	6	"ZNF417,ZNF552,ZNF586,ZNF587,ZNF587B,ZNF814"
TCGA.AG.3909.01A	19	58437491	59082320	99	-0.3928	NEUTRAL	NA	28	"A1BG,C19orf18,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF135,ZNF256,ZNF274,ZNF324,ZNF324B,ZNF329,ZNF418,ZNF446,ZNF497,ZNF544,ZNF584,ZNF606,ZNF8,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22"
TCGA.AG.A00C.01A	19	58437491	59082320	94	0.2098	NEUTRAL	NA	28	"A1BG,C19orf18,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF135,ZNF256,ZNF274,ZNF324,ZNF324B,ZNF329,ZNF418,ZNF446,ZNF497,ZNF544,ZNF584,ZNF606,ZNF8,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22"
TCGA.AG.A00H.01A	19	58483763	59082320	82	-0.2697	NEUTRAL	NA	26	"A1BG,C19orf18,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF135,ZNF274,ZNF324,ZNF324B,ZNF329,ZNF446,ZNF497,ZNF544,ZNF584,ZNF606,ZNF8,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22"
TCGA.AA.A010.01A	19	58485416	58579522	18	-0.4329	NEUTRAL	NA	4	"C19orf18,ZNF135,ZNF606,ZSCAN1"
TCGA.AA.A00L.01A	19	58499521	58718040	23	0.2642	NEUTRAL	NA	6	"ZNF135,ZNF274,ZNF329,ZNF606,ZSCAN1,ZSCAN18"
TCGA.AG.4009.01A	19	58551769	58639195	15	-0.5138	NEUTRAL	NA	4	"ZNF135,ZNF329,ZSCAN1,ZSCAN18"
TCGA.A6.6649	19	58580276	59095125	118	-0.0646	NEUTRAL	NA	23	"A1BG,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF135,ZNF274,ZNF324,ZNF324B,ZNF329,ZNF446,ZNF497,ZNF544,ZNF584,ZNF8,ZNF837,ZSCAN18,ZSCAN22"
TCGA.AG.A025.01A	19	58597489	59082320	66	-0.252	NEUTRAL	NA	22	"A1BG,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF274,ZNF324,ZNF324B,ZNF329,ZNF446,ZNF497,ZNF544,ZNF584,ZNF8,ZNF837,ZSCAN18,ZSCAN22"
TCGA.AA.A02F.01A	19	58718040	59082320	46	0.2492	NEUTRAL	NA	20	"A1BG,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF274,ZNF324,ZNF324B,ZNF446,ZNF497,ZNF544,ZNF584,ZNF8,ZNF837,ZSCAN22"
TCGA.AA.A010.01A	19	58846121	58879065	11	-0.5038	NEUTRAL	NA	4	"A1BG,ZNF497,ZNF837,ZSCAN22"
TCGA.AA.A00L.01A	19	58858300	59082320	47	0.204	NEUTRAL	NA	16	"A1BG,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF324,ZNF324B,ZNF446,ZNF497,ZNF584,ZNF837"
TCGA.AA.A017.01A	19	58862715	59082320	36	0.3087	NEUTRAL	NA	16	"A1BG,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF324,ZNF324B,ZNF446,ZNF497,ZNF584,ZNF837"
TCGA.AG.3906.01A	19	58926858	59057090	26	-0.0648	NEUTRAL	NA	8	"SLC27A5,TRIM28,ZBTB45,ZNF132,ZNF324,ZNF324B,ZNF446,ZNF584"
TCGA.AG.4009.01A	19	58944692	59012611	17	0.2951	NEUTRAL	NA	5	"SLC27A5,ZNF132,ZNF324,ZNF324B,ZNF446"
TCGA.AA.A010.01A	19	58951071	58991586	14	0.2399	NEUTRAL	NA	4	"ZNF132,ZNF324,ZNF324B,ZNF446"
TCGA.AA.A010.01A	19	59009844	59056088	11	-0.3886	NEUTRAL	NA	3	"SLC27A5,TRIM28,ZBTB45"
TCGA.AG.4009.01A	19	59021176	59057090	6	-0.3727	NEUTRAL	NA	3	"SLC27A5,TRIM28,ZBTB45"
TCGA.AG.A015.01A	19	59068016	59082320	5	-0.2142	NEUTRAL	NA	2	"MZF1,UBE2M"
TCGA.AG.4009.01A	19	59073397	59082320	5	-0.0839	NEUTRAL	NA	1	MZF1
TCGA.AG.A01W.01A	19	59092978	59194671	18	0.0718	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	59338441	59403029	39	-0.3641	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	59412754	59639022	75	-0.1183	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	19	59446430	59475847	22	-0.1518	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	19	59510469	63774132	794	-0.1814	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	59705865	59713482	5	-0.3593	NEUTRAL	NA	0	None
TCGA.DC.6160.01A	19	59777080	60069941	86	0.3291	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	59837159	59866729	7	-0.1764	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	59867053	59870899	8	0.2557	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	59927843	60092780	57	-0.3018	NEUTRAL	NA	0	None
TCGA.DC.6160.01A	19	60077476	63774132	642	-0.0075	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	60115298	60279535	39	-0.3565	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	60298405	60704183	133	-0.0966	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	60862342	61361624	92	-0.1323	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	61593134	62027410	51	0.0537	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	62331817	62363782	12	-0.5031	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	62370531	62415644	8	0.1151	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	62451733	62905546	79	-0.0267	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	62907992	63181520	43	-0.455	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	19	63183091	63774163	101	0.0048	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	20	16282	1135462	103	0.0556	NEUTRAL	NA	22	"ANGPT4,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,PSMF1,RBCK1,RSPO4,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TRIB3,ZCCHC3"
TCGA.DC.6160.01A	20	16282	28239492	1436	0.0677	NEUTRAL	NA	177	Too-Many
TCGA.AG.A01W.01A	20	16303	2769351	260	-0.3736	NEUTRAL	NA	45	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FKBP1A,IDH3B,LOC388780,NOP56,NRSN2,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM74B,TRIB3,ZCCHC3,ZNF343"
TCGA.AA.3509.01A	20	68282	139404	6	-0.1151	NEUTRAL	NA	3	"DEFB125,DEFB126,DEFB127"
TCGA.AG.3906.01A	20	68282	209868	10	0.1599	NEUTRAL	NA	5	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129"
TCGA.AA.A00N.01A	20	68282	238350	11	0.3619	NEUTRAL	NA	5	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129"
TCGA.CK.5914.01A	20	68282	238350	11	-0.2149	NEUTRAL	NA	5	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129"
TCGA.AA.A010.01A	20	68282	239676	12	-0.1449	NEUTRAL	NA	6	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132"
TCGA.AG.A00C.01A	20	68282	251777	13	0.2497	NEUTRAL	NA	7	"C20orf96,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132"
TCGA.AA.A01Q.01A	20	68282	257638	16	0.2213	NEUTRAL	NA	7	"C20orf96,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132"
TCGA.AG.A014.01A	20	68282	428556	44	0.1689	NEUTRAL	NA	13	"C20orf96,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,NRSN2,RBCK1,SOX12,TBC1D20,TRIB3,ZCCHC3"
TCGA.AA.A00Q.01A	20	68282	853555	67	0.1118	NEUTRAL	NA	20	"ANGPT4,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,RBCK1,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TRIB3,ZCCHC3"
TCGA.A6.3808.01A	20	68282	854875	79	-0.1078	NEUTRAL	NA	20	"ANGPT4,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,RBCK1,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TRIB3,ZCCHC3"
TCGA.AG.3891.01A	20	68282	1164342	90	0.349	NEUTRAL	NA	23	"ANGPT4,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,PSMF1,RBCK1,RSPO4,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AG.A01J.01A	20	68282	1281158	86	-0.392	NEUTRAL	NA	26	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AG.A02G.01A	20	68282	1281158	90	-0.4339	NEUTRAL	NA	26	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AG.3611.01A	20	68282	1356123	95	0.1584	NEUTRAL	NA	28	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AA.A017.01A	20	68282	1426260	91	-0.0653	NEUTRAL	NA	29	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AF.3914.01A	20	68282	2778571	230	0.1365	NEUTRAL	NA	46	"ANGPT4,C20orf202,C20orf96,CPXM1,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FKBP1A,IDH3B,LOC388780,NOP56,NRSN2,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM74B,TRIB3,ZCCHC3,ZNF343"
TCGA.AA.3815.01A	20	68282	3175829	322	0.0287	NEUTRAL	NA	59	"ANGPT4,AVP,C20orf141,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GNRH2,IDH3B,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3930.01A	20	68282	3175829	321	-0.0434	NEUTRAL	NA	59	"ANGPT4,AVP,C20orf141,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GNRH2,IDH3B,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.A01K.01A	20	68282	3681962	346	-0.2942	NEUTRAL	NA	66	"ADAM33,ANGPT4,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.A02E.01A	20	68282	3681962	351	0.295	NEUTRAL	NA	66	"ADAM33,ANGPT4,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.A00D.01A	20	68282	6758894	520	0.038	NEUTRAL	NA	94	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.DM.A28M.01A	20	68282	7875754	651	0.1498	NEUTRAL	NA	95	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.A004.01A	20	68282	7990800	529	0.3618	NEUTRAL	NA	96	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AG.A032.01A	20	68282	18513250	904	0.1861	NEUTRAL	NA	132	Too-Many
TCGA.CM.4750.01A	20	68282	18794413	1072	0.182	NEUTRAL	NA	135	Too-Many
TCGA.AG.A01L.01A	20	68282	19560584	956	-0.5111	NEUTRAL	NA	136	Too-Many
TCGA.AG.A015.01A	20	68282	21209612	1065	0.3299	NEUTRAL	NA	143	Too-Many
TCGA.AA.3862.01A	20	68282	25059344	1315	0.2356	NEUTRAL	NA	170	Too-Many
TCGA.AA.A02H.01A	20	68282	25596530	1211	0.3465	NEUTRAL	NA	176	Too-Many
TCGA.AA.3861.01A	20	68282	25666941	1390	-0.0967	NEUTRAL	NA	177	Too-Many
TCGA.AG.A008.01A	20	68282	25666941	1295	-0.2126	NEUTRAL	NA	177	Too-Many
TCGA.AG.A01N.01A	20	68282	25666941	1271	-0.5084	NEUTRAL	NA	177	Too-Many
TCGA.AA.A01F.01A	20	68282	25829245	1144	-0.2748	NEUTRAL	NA	177	Too-Many
TCGA.CK.4948.01B	20	68282	26063512	1431	-0.3633	NEUTRAL	NA	177	Too-Many
TCGA.AA.A01D.01A	20	68282	31015889	1332	0.1967	NEUTRAL	NA	203	Too-Many
TCGA.AA.A00J.01A	20	68282	31384536	1319	0.0504	NEUTRAL	NA	207	Too-Many
TCGA.AA.A024.01A	20	68282	33439906	1763	7.00E-04	NEUTRAL	NA	238	Too-Many
TCGA.AA.A01I.01A	20	68282	45858416	2830	0.2406	NEUTRAL	NA	385	Too-Many
TCGA.AZ.4684.01A	20	68282	58422077	3911	0.1499	NEUTRAL	NA	459	Too-Many
TCGA.AA.3939.01A	20	68282	61340559	4098	0.3367	NEUTRAL	NA	481	Too-Many
TCGA.AA.3980.01A	20	68282	62904524	4426	0.3638	NEUTRAL	NA	527	Too-Many
TCGA.AA.A029.01A	20	68282	62904524	3591	0.1666	NEUTRAL	NA	527	Too-Many
TCGA.AA.A02R.01A	20	68282	62904524	3517	-0.0795	NEUTRAL	NA	527	Too-Many
TCGA.AG.A011.01A	20	68282	62904524	3745	0.3092	NEUTRAL	NA	527	Too-Many
TCGA.AG.A023.01A	20	68282	62904524	3682	0.1805	NEUTRAL	NA	527	Too-Many
TCGA.AG.A025.01A	20	68282	62904524	3852	-0.1493	NEUTRAL	NA	527	Too-Many
TCGA.CM.4744.01A	20	68282	62904524	4554	0.2023	NEUTRAL	NA	527	Too-Many
TCGA.AA.A02K.01A	20	68303	368615	29	-0.3925	NEUTRAL	NA	11	"C20orf96,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,NRSN2,SOX12,TRIB3,ZCCHC3"
TCGA.AG.4021	20	69407	98929	7	-0.375	NEUTRAL	NA	1	DEFB125
TCGA.AA.3848	20	69407	109271	10	-0.2776	NEUTRAL	NA	1	DEFB125
TCGA.DC.6157	20	69407	129863	11	0.3	NEUTRAL	NA	2	"DEFB125,DEFB126"
TCGA.AA.3818	20	69407	133899	13	0.1258	NEUTRAL	NA	2	"DEFB125,DEFB126"
TCGA.AA.3673	20	69407	134642	16	0.3152	NEUTRAL	NA	2	"DEFB125,DEFB126"
TCGA.AF.2692	20	69407	137932	17	-0.4478	NEUTRAL	NA	2	"DEFB125,DEFB126"
TCGA.AA.3941	20	69407	209403	53	0.3057	NEUTRAL	NA	5	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129"
TCGA.AA.3982	20	69407	209403	53	0.3572	NEUTRAL	NA	5	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129"
TCGA.AA.3811	20	69407	213422	54	0.1971	NEUTRAL	NA	5	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129"
TCGA.T9.A92H	20	69407	941664	402	0.0221	NEUTRAL	NA	21	"ANGPT4,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,RBCK1,RSPO4,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TRIB3,ZCCHC3"
TCGA.AF.A56K	20	69407	1151028	491	0.2328	NEUTRAL	NA	22	"ANGPT4,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,PSMF1,RBCK1,RSPO4,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TRIB3,ZCCHC3"
TCGA.AY.4070	20	69407	1335022	546	0.0752	NEUTRAL	NA	27	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,NRSN2,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AG.3898	20	69407	1667859	710	0.0882	NEUTRAL	NA	33	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AA.3685	20	69407	1721249	749	-0.1955	NEUTRAL	NA	33	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AA.3837	20	69407	1865506	808	0.281	NEUTRAL	NA	33	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.CM.6679	20	69407	1913625	825	-0.01835	NEUTRAL	NA	34	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.G4.6303	20	69407	2026067	899	-0.0527	NEUTRAL	NA	35	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AA.3678	20	69407	3003026	1311	-0.4957	NEUTRAL	NA	51	"ANGPT4,C20orf141,C20orf202,C20orf96,CPXM1,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FKBP1A,IDH3B,LOC388780,NOP56,NRSN2,NSFL1C,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3869	20	69407	3045796	1321	-0.4795	NEUTRAL	NA	53	"ANGPT4,C20orf141,C20orf202,C20orf96,CPXM1,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FKBP1A,GNRH2,IDH3B,LOC388780,MRPS26,NOP56,NRSN2,NSFL1C,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,VPS16,ZCCHC3,ZNF343"
TCGA.CM.5868	20	69407	3296039	1392	-0.2193	NEUTRAL	NA	62	"ANGPT4,AVP,C20orf141,C20orf194,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.A6.5660	20	69407	3428436	1417	0.097	NEUTRAL	NA	62	"ANGPT4,AVP,C20orf141,C20orf194,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AY.4071	20	69407	3792203	1522	0.2577	NEUTRAL	NA	71	"ADAM33,ANGPT4,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.A6.2674	20	69407	3827308	1539	0.0537	NEUTRAL	NA	72	"ADAM33,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.A6.6653	20	69407	3978535	1576	-0.006	NEUTRAL	NA	75	"ADAM33,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.DC.6683	20	69407	4034388	1589	-0.4047	NEUTRAL	NA	75	"ADAM33,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.A6.2675	20	69407	4054481	1606	0.293	NEUTRAL	NA	75	"ADAM33,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AG.3584	20	69407	4201129	1687	0.0462	NEUTRAL	NA	76	"ADAM33,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.4N.A93T	20	69407	4289267	1732	-0.1031	NEUTRAL	NA	77	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.5M.AAT4	20	69407	5276712	2197	-0.0483	NEUTRAL	NA	84	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.A6.5661	20	69407	5542545	2323	-0.3276	NEUTRAL	NA	86	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.5M.AATA	20	69407	5979652	2496	0.2958	NEUTRAL	NA	90	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3850	20	69407	6182576	2589	0.27285	NEUTRAL	NA	93	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.D5.6929	20	69407	6361186	2651	0.2683	NEUTRAL	NA	93	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.QG.A5Z1	20	69407	7000413	2945	-0.0175	NEUTRAL	NA	94	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.D5.6931	20	69407	7697871	3285	-0.0073	NEUTRAL	NA	94	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.DC.4749	20	69407	7977579	3395	-0.5023	NEUTRAL	NA	96	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3955	20	69407	8282685	3514	0.0632	NEUTRAL	NA	97	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PLCB1,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.F4.6807	20	69407	8311461	3514	0.3751	NEUTRAL	NA	97	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PLCB1,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3975	20	69407	8700796	3701	0.0226	NEUTRAL	NA	97	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PLCB1,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.G4.6625	20	69407	10414642	4533	-0.2048	NEUTRAL	NA	103	Too-Many
TCGA.AG.3882	20	69407	11134906	4825	-0.0063	NEUTRAL	NA	105	Too-Many
TCGA.DY.A1DF	20	69407	12410580	5358	0.3571	NEUTRAL	NA	106	Too-Many
TCGA.D5.7000	20	69407	13029861	5659	0.3771	NEUTRAL	NA	107	Too-Many
TCGA.AA.3697	20	69407	13571852	5885	-0.3887	NEUTRAL	NA	109	Too-Many
TCGA.EI.6513	20	69407	13785219	5933	0.0098	NEUTRAL	NA	111	Too-Many
TCGA.DM.A0XD	20	69407	13911290	5951	0.1107	NEUTRAL	NA	112	Too-Many
TCGA.F4.6856	20	69407	13996717	5977	0.0129	NEUTRAL	NA	113	Too-Many
TCGA.AD.6964	20	69407	14124540	6000	-0.002	NEUTRAL	NA	113	Too-Many
TCGA.D5.6920	20	69407	14137022	6002	0.2463	NEUTRAL	NA	113	Too-Many
TCGA.AF.4110	20	69407	14228080	6021	-0.499	NEUTRAL	NA	113	Too-Many
TCGA.AA.3510	20	69407	14244856	6026	0.0023	NEUTRAL	NA	113	Too-Many
TCGA.D5.5538	20	69407	14417196	6066	0.1975	NEUTRAL	NA	114	Too-Many
TCGA.AA.3529	20	69407	14466617	6072	0.3412	NEUTRAL	NA	114	Too-Many
TCGA.D5.6532	20	69407	14493799	6087	0.0102	NEUTRAL	NA	114	Too-Many
TCGA.CM.6172	20	69407	14520441	6099	0.1579	NEUTRAL	NA	114	Too-Many
TCGA.AH.6643	20	69407	14524740	6097	0.2884	NEUTRAL	NA	114	Too-Many
TCGA.AD.6548	20	69407	14540690	6092	0.346	NEUTRAL	NA	114	Too-Many
TCGA.AF.3913	20	69407	14540690	6081	0.1654	NEUTRAL	NA	114	Too-Many
TCGA.EI.7002	20	69407	14562459	6109	0.3299	NEUTRAL	NA	114	Too-Many
TCGA.DC.6682	20	69407	14569990	6115	-0.0801	NEUTRAL	NA	114	Too-Many
TCGA.AG.A026	20	69407	14596778	6118	-0.5012	NEUTRAL	NA	114	Too-Many
TCGA.AZ.6606	20	69407	14609156	6113	-0.4699	NEUTRAL	NA	114	Too-Many
TCGA.A6.3807	20	69407	14609956	6111	0.2175	NEUTRAL	NA	114	Too-Many
TCGA.A6.4105	20	69407	14609956	6134	-0.2763	NEUTRAL	NA	114	Too-Many
TCGA.AA.3867	20	69407	14618547	6134	-0.4761	NEUTRAL	NA	114	Too-Many
TCGA.A6.6780	20	69407	14622994	6125	0.0233	NEUTRAL	NA	114	Too-Many
TCGA.CK.6746	20	69407	14640978	6125	0.017	NEUTRAL	NA	114	Too-Many
TCGA.AA.3543	20	69407	14658363	6146	0.0183	NEUTRAL	NA	114	Too-Many
TCGA.AG.3885	20	69407	14658363	6152	-0.0003	NEUTRAL	NA	114	Too-Many
TCGA.D5.6930	20	69407	14661105	6149	0.0051	NEUTRAL	NA	114	Too-Many
TCGA.AG.3883	20	69407	14662720	6157	-0.2821	NEUTRAL	NA	114	Too-Many
TCGA.F5.6813	20	69407	14672176	6153	-0.0033	NEUTRAL	NA	114	Too-Many
TCGA.AA.3845	20	69407	14681862	6156	0.3475	NEUTRAL	NA	114	Too-Many
TCGA.AG.3726	20	69407	14681862	6161	-0.0033	NEUTRAL	NA	114	Too-Many
TCGA.AZ.6600	20	69407	14686296	6156	0.2995	NEUTRAL	NA	114	Too-Many
TCGA.CM.5344	20	69407	14686508	6159	-0.2707	NEUTRAL	NA	114	Too-Many
TCGA.AA.3511	20	69407	14687768	6148	0.2465	NEUTRAL	NA	114	Too-Many
TCGA.F4.6808	20	69407	14694426	6152	-0.0889	NEUTRAL	NA	114	Too-Many
TCGA.AG.3896	20	69407	14705887	6144	0.3199	NEUTRAL	NA	114	Too-Many
TCGA.D5.6535	20	69407	14705887	6169	-0.0007	NEUTRAL	NA	114	Too-Many
TCGA.AA.3821	20	69407	14718195	6154	-0.0125	NEUTRAL	NA	114	Too-Many
TCGA.AA.3860	20	69407	14721126	6174	-0.0722	NEUTRAL	NA	114	Too-Many
TCGA.AA.3812	20	69407	14728971	6177	0.0057	NEUTRAL	NA	114	Too-Many
TCGA.AA.3864	20	69407	14728971	6159	0.0479	NEUTRAL	NA	114	Too-Many
TCGA.AA.3947	20	69407	14728971	6164	0.0182	NEUTRAL	NA	114	Too-Many
TCGA.G4.6306	20	69407	14729868	6169	-0.0202	NEUTRAL	NA	114	Too-Many
TCGA.AA.A03J	20	69407	14739572	6042	-0.2944	NEUTRAL	NA	114	Too-Many
TCGA.EI.6917	20	69407	14739572	6169	-0.0049	NEUTRAL	NA	114	Too-Many
TCGA.CM.5860	20	69407	14745197	6167	-0.0231	NEUTRAL	NA	114	Too-Many
TCGA.AG.4008	20	69407	14746325	6124	0.2255	NEUTRAL	NA	114	Too-Many
TCGA.F4.6855	20	69407	14760043	6171	0.3086	NEUTRAL	NA	114	Too-Many
TCGA.AZ.6605	20	69407	14762102	6166	-0.1555	NEUTRAL	NA	114	Too-Many
TCGA.F4.6569	20	69407	14762970	6186	0.257	NEUTRAL	NA	114	Too-Many
TCGA.AA.3518	20	69407	14781683	6167	0.0097	NEUTRAL	NA	114	Too-Many
TCGA.A6.A56B	20	69407	14782741	6144	-0.0297	NEUTRAL	NA	114	Too-Many
TCGA.A6.2678	20	69407	14797571	6187	-0.0012	NEUTRAL	NA	114	Too-Many
TCGA.EF.5830	20	69407	14817017	6180	0.0024	NEUTRAL	NA	114	Too-Many
TCGA.AA.A022	20	69407	14823471	6182	0.0126	NEUTRAL	NA	114	Too-Many
TCGA.D5.6529	20	69407	14823471	6200	0.2246	NEUTRAL	NA	114	Too-Many
TCGA.AY.A8YK	20	69407	14830595	6194	0.3679	NEUTRAL	NA	114	Too-Many
TCGA.AD.6888	20	69407	14837327	6198	-0.0202	NEUTRAL	NA	114	Too-Many
TCGA.AA.3977	20	69407	14837964	6197	0.0474	NEUTRAL	NA	114	Too-Many
TCGA.DM.A28C	20	69407	14837964	6198	-0.003	NEUTRAL	NA	114	Too-Many
TCGA.AA.3664	20	69407	14850100	6213	0.0039	NEUTRAL	NA	114	Too-Many
TCGA.AA.3966	20	69407	14850761	6199	-0.1972	NEUTRAL	NA	114	Too-Many
TCGA.AY.6197	20	69407	14850761	6083	0.008	NEUTRAL	NA	114	Too-Many
TCGA.AA.3660	20	69407	14862803	6211	-0.0154	NEUTRAL	NA	114	Too-Many
TCGA.EI.6512	20	69407	14863546	6215	-0.3978	NEUTRAL	NA	114	Too-Many
TCGA.A6.6648	20	69407	14883126	6223	-0.2936	NEUTRAL	NA	114	Too-Many
TCGA.AD.6901	20	69407	14883126	6210	0.3564	NEUTRAL	NA	114	Too-Many
TCGA.AA.3875	20	69407	14894919	6228	0.1535	NEUTRAL	NA	114	Too-Many
TCGA.AG.3731	20	69407	14914708	6241	0.3316	NEUTRAL	NA	114	Too-Many
TCGA.CL.5917	20	69407	14917185	6229	-0.0444	NEUTRAL	NA	114	Too-Many
TCGA.AA.3994	20	69407	14923389	6234	0.0381	NEUTRAL	NA	114	Too-Many
TCGA.AA.3715	20	69407	14941454	6254	0.0544	NEUTRAL	NA	114	Too-Many
TCGA.AF.2689	20	69407	15009053	6260	-0.3881	NEUTRAL	NA	114	Too-Many
TCGA.D5.5540	20	69407	15063213	6295	-0.1626	NEUTRAL	NA	114	Too-Many
TCGA.D5.6898	20	69407	15211512	6366	-0.2081	NEUTRAL	NA	114	Too-Many
TCGA.G4.6295	20	69407	15246983	6398	-0.3957	NEUTRAL	NA	114	Too-Many
TCGA.AU.3779	20	69407	15276093	6397	-0.0093	NEUTRAL	NA	114	Too-Many
TCGA.CA.5254	20	69407	15349702	6403	0.3278	NEUTRAL	NA	114	Too-Many
TCGA.CA.6716	20	69407	15416754	6450	0.0229	NEUTRAL	NA	114	Too-Many
TCGA.D5.6926	20	69407	15450744	6480	0.2989	NEUTRAL	NA	114	Too-Many
TCGA.AG.4015	20	69407	15497645	6487	0.0155	NEUTRAL	NA	114	Too-Many
TCGA.D5.6536	20	69407	15523137	6531	-0.0013	NEUTRAL	NA	114	Too-Many
TCGA.AZ.5403	20	69407	15563108	6548	0.1131	NEUTRAL	NA	114	Too-Many
TCGA.AG.3725	20	69407	15887266	6751	0.3443	NEUTRAL	NA	114	Too-Many
TCGA.CM.6164	20	69407	16499082	7130	-0.1719	NEUTRAL	NA	115	Too-Many
TCGA.DY.A1DG	20	69407	16662744	7240	0.0273	NEUTRAL	NA	115	Too-Many
TCGA.D5.6533	20	69407	18277376	7949	-0.1976	NEUTRAL	NA	128	Too-Many
TCGA.EI.6884	20	69407	18902227	8189	-0.2667	NEUTRAL	NA	135	Too-Many
TCGA.G4.6315	20	69407	19028596	8270	-0.4311	NEUTRAL	NA	135	Too-Many
TCGA.AA.A01S	20	69407	19044371	8264	-0.00165	NEUTRAL	NA	135	Too-Many
TCGA.A6.5667	20	69407	19249918	8353	-0.413	NEUTRAL	NA	136	Too-Many
TCGA.G5.6641	20	69407	19303328	8368	-0.2234	NEUTRAL	NA	136	Too-Many
TCGA.F4.6809	20	69407	19971842	8805	-0.4509	NEUTRAL	NA	137	Too-Many
TCGA.NH.A6GA	20	69407	20059714	8860	0.0254	NEUTRAL	NA	140	Too-Many
TCGA.A6.6138	20	69407	20805283	9116	0.0233	NEUTRAL	NA	142	Too-Many
TCGA.G4.6298	20	69407	21197753	9267	-0.4659	NEUTRAL	NA	143	Too-Many
TCGA.NH.A6GB	20	69407	21301900	9293	0.2264	NEUTRAL	NA	144	Too-Many
TCGA.F5.6702	20	69407	21597236	9316	-0.3439	NEUTRAL	NA	146	Too-Many
TCGA.F4.6704	20	69407	21714806	9368	0.1657	NEUTRAL	NA	147	Too-Many
TCGA.CM.5349	20	69407	22145871	9485	-0.4556	NEUTRAL	NA	147	Too-Many
TCGA.G4.6322	20	69407	22679976	9709	0.1462	NEUTRAL	NA	148	Too-Many
TCGA.CM.6676	20	69407	23107437	9901	-0.2624	NEUTRAL	NA	151	Too-Many
TCGA.D5.6534	20	69407	23517690	10119	-0.23	NEUTRAL	NA	157	Too-Many
TCGA.AG.3902	20	69407	23926032	10260	-0.4202	NEUTRAL	NA	164	Too-Many
TCGA.AY.6196	20	69407	24170630	10328	0.0444	NEUTRAL	NA	165	Too-Many
TCGA.QL.A97D	20	69407	24673026	10637	-0.1443	NEUTRAL	NA	166	Too-Many
TCGA.AM.5820	20	69407	24712081	10647	-0.0077	NEUTRAL	NA	166	Too-Many
TCGA.CK.6748	20	69407	24712081	10644	-0.4502	NEUTRAL	NA	166	Too-Many
TCGA.AA.3814	20	69407	25738763	10943	-0.0182	NEUTRAL	NA	177	Too-Many
TCGA.AA.3841	20	69407	25846493	10946	-0.3766	NEUTRAL	NA	177	Too-Many
TCGA.AA.3526	20	69407	25862277	10939	-0.0296	NEUTRAL	NA	177	Too-Many
TCGA.D5.6924	20	69407	25862277	10930	-0.0372	NEUTRAL	NA	177	Too-Many
TCGA.G4.6320	20	69407	25984795	10954	-0.1949	NEUTRAL	NA	177	Too-Many
TCGA.A6.6650	20	69407	26192654	10156	-0.0899	NEUTRAL	NA	177	Too-Many
TCGA.A6.2685	20	69407	26266312	10952	0.0445	NEUTRAL	NA	177	Too-Many
TCGA.A6.6651	20	69407	26266312	10935	-0.1012	NEUTRAL	NA	177	Too-Many
TCGA.AA.3560	20	69407	26266312	10975	-0.0385	NEUTRAL	NA	177	Too-Many
TCGA.CM.6168	20	69407	26266312	10968	-0.286	NEUTRAL	NA	177	Too-Many
TCGA.G4.6307	20	69407	26266312	10976	0.3668	NEUTRAL	NA	177	Too-Many
TCGA.AA.3495	20	69407	26288534	10967	0.0136	NEUTRAL	NA	177	Too-Many
TCGA.AZ.4682	20	69407	26288534	10970	-0.0071	NEUTRAL	NA	177	Too-Many
TCGA.A6.2671	20	69407	26289924	10965	0.2794	NEUTRAL	NA	177	Too-Many
TCGA.AA.3524	20	69407	26289924	10958	-0.0326	NEUTRAL	NA	177	Too-Many
TCGA.AA.3548	20	69407	26289924	10976	-0.0709	NEUTRAL	NA	177	Too-Many
TCGA.AF.A56L	20	69407	26289924	10946	-0.1855	NEUTRAL	NA	177	Too-Many
TCGA.AG.3893	20	69407	26289924	10863	-0.033	NEUTRAL	NA	177	Too-Many
TCGA.AY.5543	20	69407	26289924	10900	-0.3656	NEUTRAL	NA	177	Too-Many
TCGA.CM.4746	20	69407	26289924	10963	-0.0075	NEUTRAL	NA	177	Too-Many
TCGA.CM.6167	20	69407	26289924	10963	0.0129	NEUTRAL	NA	177	Too-Many
TCGA.D5.6537	20	69407	26289924	10927	-0.0089	NEUTRAL	NA	177	Too-Many
TCGA.D5.6932	20	69407	26289924	10961	-0.2321	NEUTRAL	NA	177	Too-Many
TCGA.DC.6158	20	69407	26289924	10931	-0.3094	NEUTRAL	NA	177	Too-Many
TCGA.DY.A0XA	20	69407	26289924	10969	0.0931	NEUTRAL	NA	177	Too-Many
TCGA.G5.6572	20	69407	26289924	10955	0.3748	NEUTRAL	NA	177	Too-Many
TCGA.D5.6538	20	69407	29505892	10966	-0.0535	NEUTRAL	NA	177	Too-Many
TCGA.AA.3681	20	69407	29529914	10978	-0.4711	NEUTRAL	NA	177	Too-Many
TCGA.F4.6806	20	69407	29537341	10943	-0.2243	NEUTRAL	NA	177	Too-Many
TCGA.AA.3561	20	69407	29598226	10986	-0.3673	NEUTRAL	NA	177	Too-Many
TCGA.AF.2691	20	69407	29598226	10981	0.0326	NEUTRAL	NA	177	Too-Many
TCGA.DM.A1D7	20	69407	29847617	10986	-0.3027	NEUTRAL	NA	178	Too-Many
TCGA.F4.6463	20	69407	29873956	10984	-0.0244	NEUTRAL	NA	178	Too-Many
TCGA.AF.6136	20	69407	29876271	10974	0	NEUTRAL	NA	178	Too-Many
TCGA.AA.3972	20	69407	29942694	11010	0.0851	NEUTRAL	NA	179	Too-Many
TCGA.AD.6963	20	69407	29960457	11004	0.1962	NEUTRAL	NA	180	Too-Many
TCGA.DM.A1D6	20	69407	30798667	11010	-0.0752	NEUTRAL	NA	201	Too-Many
TCGA.DM.A285	20	69407	31019724	11159	0.2718	NEUTRAL	NA	203	Too-Many
TCGA.CI.6620	20	69407	33573499	11700	0.0135	NEUTRAL	NA	241	Too-Many
TCGA.G4.6299	20	69407	34171323	11851	-0.042	NEUTRAL	NA	252	Too-Many
TCGA.F4.6805	20	69407	34537159	11900	0.0141	NEUTRAL	NA	259	Too-Many
TCGA.NH.A6GC	20	69407	37001630	12421	0.3399	NEUTRAL	NA	290	Too-Many
TCGA.AZ.4614	20	69407	39662841	13276	0.0149	NEUTRAL	NA	300	Too-Many
TCGA.CI.6624	20	69407	42368192	14469	0.0209	NEUTRAL	NA	312	Too-Many
TCGA.AY.A71X	20	69407	42644734	14584	0.07	NEUTRAL	NA	313	Too-Many
TCGA.CM.5348	20	69407	50287924	17282	0.307	NEUTRAL	NA	415	Too-Many
TCGA.DM.A1HB	20	69407	52643154	17780	0.026	NEUTRAL	NA	420	Too-Many
TCGA.AG.3575	20	69407	60728766	22013	-0.0096	NEUTRAL	NA	469	Too-Many
TCGA.3L.AA1B	20	69407	62912462	22425	0.3362	NEUTRAL	NA	527	Too-Many
TCGA.4T.AA8H	20	69407	62912462	22427	-0.0171	NEUTRAL	NA	527	Too-Many
TCGA.5M.AAT6	20	69407	62912462	22421	0.0072	NEUTRAL	NA	527	Too-Many
TCGA.A6.2682	20	69407	62912462	22072	0.3635	NEUTRAL	NA	527	Too-Many
TCGA.A6.2684	20	69407	62912462	20870	-0.0193	NEUTRAL	NA	527	Too-Many
TCGA.A6.2686	20	69407	62912462	22401	0.2556	NEUTRAL	NA	527	Too-Many
TCGA.A6.3809	20	69407	62912462	20880	-0.022	NEUTRAL	NA	527	Too-Many
TCGA.A6.4107	20	69407	62912462	22432	0.3263	NEUTRAL	NA	527	Too-Many
TCGA.A6.5657	20	69407	62912462	22389	-0.0295	NEUTRAL	NA	527	Too-Many
TCGA.A6.5664	20	69407	62912462	22380	0.0013	NEUTRAL	NA	527	Too-Many
TCGA.A6.6141	20	69407	62912462	22433	-0.0173	NEUTRAL	NA	527	Too-Many
TCGA.A6.6649	20	69407	62912462	22440	0.1566	NEUTRAL	NA	527	Too-Many
TCGA.A6.6781	20	69407	62912462	20841	-0.0361	NEUTRAL	NA	527	Too-Many
TCGA.A6.A565	20	69407	62912462	22312	-0.0367	NEUTRAL	NA	527	Too-Many
TCGA.A6.A566	20	69407	62912462	22256	0.0133	NEUTRAL	NA	527	Too-Many
TCGA.AA.3492	20	69407	62912462	22431	0.0056	NEUTRAL	NA	527	Too-Many
TCGA.AA.3502	20	69407	62912462	22428	-0.0254	NEUTRAL	NA	527	Too-Many
TCGA.AA.3516	20	69407	62912462	22401	0.012	NEUTRAL	NA	527	Too-Many
TCGA.AA.3522	20	69407	62912462	22415	-0.0089	NEUTRAL	NA	527	Too-Many
TCGA.AA.3527	20	69407	62912462	22430	0.0033	NEUTRAL	NA	527	Too-Many
TCGA.AA.3555	20	69407	62912462	22447	-0.0018	NEUTRAL	NA	527	Too-Many
TCGA.AA.3655	20	69407	62912462	22435	0.0016	NEUTRAL	NA	527	Too-Many
TCGA.AA.3662	20	69407	62912462	22433	0.2997	NEUTRAL	NA	527	Too-Many
TCGA.AA.3663	20	69407	62912462	22403	0.0109	NEUTRAL	NA	527	Too-Many
TCGA.AA.3680	20	69407	62912462	22452	0.0161	NEUTRAL	NA	527	Too-Many
TCGA.AA.3684	20	69407	62912462	22443	0.2032	NEUTRAL	NA	527	Too-Many
TCGA.AA.3710	20	69407	62912462	22435	-0.0115	NEUTRAL	NA	527	Too-Many
TCGA.AA.3713	20	69407	62912462	22412	-0.0085	NEUTRAL	NA	527	Too-Many
TCGA.AA.3831	20	69407	62912462	22407	0.0059	NEUTRAL	NA	527	Too-Many
TCGA.AA.3833	20	69407	62912462	22449	-0.0197	NEUTRAL	NA	527	Too-Many
TCGA.AA.3851	20	69407	62912462	22437	0.3192	NEUTRAL	NA	527	Too-Many
TCGA.AA.3852	20	69407	62912462	22448	-0.0236	NEUTRAL	NA	527	Too-Many
TCGA.AA.3854	20	69407	62912462	22449	0.0233	NEUTRAL	NA	527	Too-Many
TCGA.AA.3870	20	69407	62912462	22431	0.0523	NEUTRAL	NA	527	Too-Many
TCGA.AA.3877	20	69407	62912462	22439	0.0048	NEUTRAL	NA	527	Too-Many
TCGA.AA.3949	20	69407	62912462	22434	0.0487	NEUTRAL	NA	527	Too-Many
TCGA.AA.3950	20	69407	62912462	22431	0.0392	NEUTRAL	NA	527	Too-Many
TCGA.AA.3986	20	69407	62912462	22439	0.3778	NEUTRAL	NA	527	Too-Many
TCGA.AA.A01P	20	69407	62912462	22414	-0.0142	NEUTRAL	NA	527	Too-Many
TCGA.AA.A01R	20	69407	62912462	22433	0.0009	NEUTRAL	NA	527	Too-Many
TCGA.AA.A01V	20	69407	62912462	22431	0.0261	NEUTRAL	NA	527	Too-Many
TCGA.AA.A01X	20	69407	62912462	22415	0.3197	NEUTRAL	NA	527	Too-Many
TCGA.AA.A03F	20	69407	62912462	22435	-0.002	NEUTRAL	NA	527	Too-Many
TCGA.AD.5900	20	69407	62912462	22397	0.307	NEUTRAL	NA	527	Too-Many
TCGA.AD.6889	20	69407	62912462	22411	-0.043	NEUTRAL	NA	527	Too-Many
TCGA.AD.6890	20	69407	62912462	22414	0.2151	NEUTRAL	NA	527	Too-Many
TCGA.AD.6895	20	69407	62912462	22410	0.1012	NEUTRAL	NA	527	Too-Many
TCGA.AD.A5EJ	20	69407	62912462	22321	-0.0133	NEUTRAL	NA	527	Too-Many
TCGA.AF.2693	20	69407	62912462	22443	0.3087	NEUTRAL	NA	527	Too-Many
TCGA.AF.6672	20	69407	62912462	22410	0.2652	NEUTRAL	NA	527	Too-Many
TCGA.AG.3591	20	69407	62912462	22447	0.142	NEUTRAL	NA	527	Too-Many
TCGA.AG.3594	20	69407	62912462	22442	0.0063	NEUTRAL	NA	527	Too-Many
TCGA.AG.3732	20	69407	62912462	22353	0	NEUTRAL	NA	527	Too-Many
TCGA.AG.3878	20	69407	62912462	22450	0.2694	NEUTRAL	NA	527	Too-Many
TCGA.AG.3881	20	69407	62912462	22441	0.0754	NEUTRAL	NA	527	Too-Many
TCGA.AG.3892	20	69407	62912462	22363	-0.0047	NEUTRAL	NA	527	Too-Many
TCGA.AG.3901	20	69407	62912462	22369	0.0654	NEUTRAL	NA	527	Too-Many
TCGA.AG.A02N	20	69407	62912462	22402	0.0105	NEUTRAL	NA	527	Too-Many
TCGA.AH.6544	20	69407	62912462	22411	0.203	NEUTRAL	NA	527	Too-Many
TCGA.AH.6547	20	69407	62912462	22422	0.0456	NEUTRAL	NA	527	Too-Many
TCGA.AH.6903	20	69407	62912462	22411	0.3731	NEUTRAL	NA	527	Too-Many
TCGA.AM.5821	20	69407	62912462	22362	0.0474	NEUTRAL	NA	527	Too-Many
TCGA.AU.6004	20	69407	62912462	22290	-0.0524	NEUTRAL	NA	527	Too-Many
TCGA.AY.6386	20	69407	62912462	22419	-0.0212	NEUTRAL	NA	527	Too-Many
TCGA.AZ.4315	20	69407	62912462	22414	-0.0106	NEUTRAL	NA	527	Too-Many
TCGA.AZ.4323	20	69407	62912462	22360	0.252	NEUTRAL	NA	527	Too-Many
TCGA.AZ.4615	20	69407	62912462	22423	0.0208	NEUTRAL	NA	527	Too-Many
TCGA.AZ.4616	20	69407	62912462	22380	0.1891	NEUTRAL	NA	527	Too-Many
TCGA.AZ.5407	20	69407	62912462	22437	-0.0037	NEUTRAL	NA	527	Too-Many
TCGA.AZ.6599	20	69407	62912462	22443	-0.0414	NEUTRAL	NA	527	Too-Many
TCGA.AZ.6601	20	69407	62912462	22443	-0.0035	NEUTRAL	NA	527	Too-Many
TCGA.BM.6198	20	69407	62912462	22443	0.03435	NEUTRAL	NA	527	Too-Many
TCGA.CA.5255	20	69407	62912462	22369	0.1589	NEUTRAL	NA	527	Too-Many
TCGA.CA.5796	20	69407	62912462	22398	0.0285	NEUTRAL	NA	527	Too-Many
TCGA.CA.6717	20	69407	62912462	22351	-0.0177	NEUTRAL	NA	527	Too-Many
TCGA.CA.6718	20	69407	62912462	22367	0.0423	NEUTRAL	NA	527	Too-Many
TCGA.CK.4947	20	69407	62912462	22408	0.1165	NEUTRAL	NA	527	Too-Many
TCGA.CK.4950	20	69407	62912462	22249	0.2655	NEUTRAL	NA	527	Too-Many
TCGA.CK.4951	20	69407	62912462	22342	0.0035	NEUTRAL	NA	527	Too-Many
TCGA.CK.5913	20	69407	62912462	22414	0.0038	NEUTRAL	NA	527	Too-Many
TCGA.CK.5916	20	69407	62912462	22387	-0.0194	NEUTRAL	NA	527	Too-Many
TCGA.CK.6747	20	69407	62912462	22359	0.0075	NEUTRAL	NA	527	Too-Many
TCGA.CK.6751	20	69407	62912462	22326	-0.0019	NEUTRAL	NA	527	Too-Many
TCGA.CM.4743	20	69407	62912462	22434	-0.0302	NEUTRAL	NA	527	Too-Many
TCGA.CM.4748	20	69407	62912462	22430	0.0023	NEUTRAL	NA	527	Too-Many
TCGA.CM.5861	20	69407	62912462	22414	-0.0073	NEUTRAL	NA	527	Too-Many
TCGA.CM.5863	20	69407	62912462	22404	0.1533	NEUTRAL	NA	527	Too-Many
TCGA.CM.6162	20	69407	62912462	22387	-0.0394	NEUTRAL	NA	527	Too-Many
TCGA.CM.6171	20	69407	62912462	22435	0.1348	NEUTRAL	NA	527	Too-Many
TCGA.CM.6674	20	69407	62912462	22393	-0.0107	NEUTRAL	NA	527	Too-Many
TCGA.CM.6675	20	69407	62912462	22388	0.0228	NEUTRAL	NA	527	Too-Many
TCGA.CM.6678	20	69407	62912462	22394	0.1809	NEUTRAL	NA	527	Too-Many
TCGA.CM.6680	20	69407	62912462	22404	0.0234	NEUTRAL	NA	527	Too-Many
TCGA.D5.5539	20	69407	62912462	22397	0.239	NEUTRAL	NA	527	Too-Many
TCGA.D5.6530	20	69407	62912462	22441	-0.0339	NEUTRAL	NA	527	Too-Many
TCGA.D5.6531	20	69407	62912462	22433	0.34	NEUTRAL	NA	527	Too-Many
TCGA.D5.6539	20	69407	62912462	22396	0.3183	NEUTRAL	NA	527	Too-Many
TCGA.D5.6540	20	69407	62912462	22398	0.0026	NEUTRAL	NA	527	Too-Many
TCGA.D5.6541	20	69407	62912462	22440	-0.0243	NEUTRAL	NA	527	Too-Many
TCGA.D5.6927	20	69407	62912462	22418	-0.0007	NEUTRAL	NA	527	Too-Many
TCGA.D5.6928	20	69407	62912462	22419	0.1708	NEUTRAL	NA	527	Too-Many
TCGA.DC.6155	20	69407	62912462	22336	0.3606	NEUTRAL	NA	527	Too-Many
TCGA.DC.6681	20	69407	62912462	22413	0.312	NEUTRAL	NA	527	Too-Many
TCGA.DM.A1D9	20	69407	62912462	22423	0.02	NEUTRAL	NA	527	Too-Many
TCGA.DM.A280	20	69407	62912462	22410	0.0133	NEUTRAL	NA	527	Too-Many
TCGA.DM.A288	20	69407	62912462	22388	0.3582	NEUTRAL	NA	527	Too-Many
TCGA.DM.A28G	20	69407	62912462	22418	0.0564	NEUTRAL	NA	527	Too-Many
TCGA.DM.A28K	20	69407	62912462	22399	-0.0021	NEUTRAL	NA	527	Too-Many
TCGA.DT.5265	20	69407	62912462	22418	0.0083	NEUTRAL	NA	527	Too-Many
TCGA.EI.6507	20	69407	62912462	22447	-0.0092	NEUTRAL	NA	527	Too-Many
TCGA.EI.6882	20	69407	62912462	22418	-0.0015	NEUTRAL	NA	527	Too-Many
TCGA.EI.7004	20	69407	62912462	22413	-0.0365	NEUTRAL	NA	527	Too-Many
TCGA.F4.6461	20	69407	62912462	22373	-0.0257	NEUTRAL	NA	527	Too-Many
TCGA.F4.6570	20	69407	62912462	22441	0.1356	NEUTRAL	NA	527	Too-Many
TCGA.F4.6703	20	69407	62912462	22407	0.0301	NEUTRAL	NA	527	Too-Many
TCGA.F5.6814	20	69407	62912462	22414	0.1416	NEUTRAL	NA	527	Too-Many
TCGA.F5.6861	20	69407	62912462	22405	0.3271	NEUTRAL	NA	527	Too-Many
TCGA.G4.6293	20	69407	62912462	22422	0.3329	NEUTRAL	NA	527	Too-Many
TCGA.G4.6302	20	69407	62912462	22435	-0.0146	NEUTRAL	NA	527	Too-Many
TCGA.G4.6304	20	69407	62912462	22416	-0.0157	NEUTRAL	NA	527	Too-Many
TCGA.G4.6309	20	69407	62912462	22397	-0.0027	NEUTRAL	NA	527	Too-Many
TCGA.G4.6321	20	69407	62912462	22441	0.0003	NEUTRAL	NA	527	Too-Many
TCGA.G4.6323	20	69407	62912462	22444	0.1191	NEUTRAL	NA	527	Too-Many
TCGA.G4.6586	20	69407	62912462	22441	-0.0284	NEUTRAL	NA	527	Too-Many
TCGA.G4.6588	20	69407	62912462	22434	-0.0247	NEUTRAL	NA	527	Too-Many
TCGA.G4.6628	20	69407	62912462	22392	-0.0063	NEUTRAL	NA	527	Too-Many
TCGA.NH.A50U	20	69407	62912462	22427	0.0306	NEUTRAL	NA	527	Too-Many
TCGA.NH.A5IV	20	69407	62912462	22401	0.0252	NEUTRAL	NA	527	Too-Many
TCGA.QG.A5YW	20	69407	62912462	22317	0.2667	NEUTRAL	NA	527	Too-Many
TCGA.QG.A5Z2	20	69407	62912462	22263	-0.0436	NEUTRAL	NA	527	Too-Many
TCGA.WS.AB45	20	69407	62912462	22420	-0.0119	NEUTRAL	NA	527	Too-Many
TCGA.AA.3695	20	102180	109271	3	-0.2056	NEUTRAL	NA	0	None
TCGA.AG.4021	20	102180	43918590	14981	-6.00E-04	NEUTRAL	NA	337	Too-Many
TCGA.AA.3848	20	121975	14493799	6082	0.0444	NEUTRAL	NA	113	Too-Many
TCGA.CI.6621	20	129863	26289924	10941	0.1249	NEUTRAL	NA	175	Too-Many
TCGA.DC.6157	20	133899	9331673	3950	-0.0514	NEUTRAL	NA	96	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3489	20	134642	62912462	22351	0.2788	NEUTRAL	NA	525	Too-Many
TCGA.A6.2672	20	137932	55067134	19282	-0.1413	NEUTRAL	NA	429	Too-Many
TCGA.A6.5665	20	137932	55067134	19302	-0.0855	NEUTRAL	NA	429	Too-Many
TCGA.AF.2692	20	138003	3715693	1495	-0.1076	NEUTRAL	NA	65	"ADAM33,ANGPT4,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.CL.5918	20	139744	3366567	1384	0.3599	NEUTRAL	NA	60	"ANGPT4,AVP,C20orf141,C20orf194,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AG.4009.01A	20	256572	398130	22	-0.5098	NEUTRAL	NA	6	"C20orf96,NRSN2,RBCK1,SOX12,TRIB3,ZCCHC3"
TCGA.AA.A01Q.01A	20	258922	307121	9	-0.5109	NEUTRAL	NA	3	"C20orf96,SOX12,ZCCHC3"
TCGA.AG.3605.01A	20	278186	58519950	72	-0.1897	NEUTRAL	NA	455	Too-Many
TCGA.AA.A01Q.01A	20	307942	745825	45	0.1878	NEUTRAL	NA	10	"CSNK2A1,NRSN2,RBCK1,SCRT2,SLC52A3,SOX12,SRXN1,TBC1D20,TCF15,TRIB3"
TCGA.AG.3909.01A	20	309276	407949	13	0.0846	NEUTRAL	NA	4	"NRSN2,RBCK1,SOX12,TRIB3"
TCGA.AA.A02K.01A	20	371924	409559	10	0.1611	NEUTRAL	NA	2	"RBCK1,TRIB3"
TCGA.AG.A00C.01A	20	398130	2633883	164	0.276	NEUTRAL	NA	32	"ANGPT4,C20orf202,CSNK2A1,FAM110A,FKBP1A,LOC388780,NOP56,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM74B,ZNF343"
TCGA.AA.A00N.01A	20	399961	1187462	65	0.3204	NEUTRAL	NA	13	"ANGPT4,C20orf202,CSNK2A1,FAM110A,PSMF1,RBCK1,RSPO4,SCRT2,SLC52A3,SRXN1,TBC1D20,TCF15,TMEM74B"
TCGA.AA.A02K.01A	20	410936	1558993	108	-0.3842	NEUTRAL	NA	21	"ANGPT4,C20orf202,CSNK2A1,FAM110A,FKBP1A,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB1,SIRPB2,SIRPD,SLC52A3,SNPH,SRXN1,TBC1D20,TCF15,TMEM74B"
TCGA.CK.5914.01A	20	425634	1161454	50	-0.2265	NEUTRAL	NA	11	"ANGPT4,CSNK2A1,FAM110A,PSMF1,RSPO4,SCRT2,SLC52A3,SRXN1,TBC1D20,TCF15,TMEM74B"
TCGA.AG.A014.01A	20	464576	21689830	1065	-0.0978	NEUTRAL	NA	134	Too-Many
TCGA.AG.3906.01A	20	466989	2840653	178	0.2677	NEUTRAL	NA	37	"ANGPT4,C20orf141,C20orf202,CPXM1,CSNK2A1,EBF4,FAM110A,FKBP1A,IDH3B,LOC388780,NOP56,NSFL1C,PCED1A,PDYN,PSMF1,RAD21L1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SRXN1,STK35,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,VPS16,ZNF343"
TCGA.AA.A00Q.01A	20	854875	1444923	37	-0.2761	NEUTRAL	NA	10	"ANGPT4,C20orf202,FKBP1A,NSFL1C,PSMF1,RAD21L1,RSPO4,SDCBP2,SNPH,TMEM74B"
TCGA.AA.A01Q.01A	20	896501	2633247	118	0.3276	NEUTRAL	NA	24	"ANGPT4,C20orf202,FKBP1A,LOC388780,NOP56,NSFL1C,PDYN,PSMF1,RAD21L1,RSPO4,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SNPH,SNRPB,STK35,TGM3,TGM6,TMC2,TMEM74B,ZNF343"
TCGA.AA.3982	20	904624	909449	6	0.0851	NEUTRAL	NA	0	None
TCGA.T9.A92H	20	947149	14459572	5663	0.03	NEUTRAL	NA	94	"ADAM33,ADRA1D,ANKEF1,AP5S1,ATRN,AVP,BMP2,BTBD3,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,ESF1,FASTKD5,FERMT1,FKBP1A,FLRT3,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ISM1,ITPA,JAG1,LAMP5,LOC388780,LRRN4,LZTS3,MACROD2,MAVS,MCM8,MKKS,MRPS26,NDUFAF5,NOP56,NSFL1C,OXT,PAK7,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RNF24,RSPO4,SDCBP2,SEL1L2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLX4IP,SMOX,SNAP25,SNPH,SNRPB,SPEF1,SPTLC3,STK35,TASP1,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.AF.A56K	20	1151284	14540690	5606	-0.2561	NEUTRAL	NA	92	"ADAM33,ADRA1D,ANKEF1,AP5S1,ATRN,AVP,BMP2,BTBD3,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,ESF1,FASTKD5,FERMT1,FKBP1A,FLRT3,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ISM1,ITPA,JAG1,LAMP5,LOC388780,LRRN4,LZTS3,MACROD2,MAVS,MCM8,MKKS,MRPS26,NDUFAF5,NOP56,NSFL1C,OXT,PAK7,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PTPRA,RAD21L1,RASSF2,RNF24,SDCBP2,SEL1L2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLX4IP,SMOX,SNAP25,SNPH,SNRPB,SPEF1,SPTLC3,STK35,TASP1,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.A6.3808.01A	20	1161454	25755459	1323	0.0676	NEUTRAL	NA	155	Too-Many
TCGA.CK.4952.01A	20	1177212	62374968	4434	-0.0269	NEUTRAL	NA	488	Too-Many
TCGA.CK.5914.01A	20	1218660	1460306	37	-0.4014	NEUTRAL	NA	6	"FKBP1A,NSFL1C,RAD21L1,SDCBP2,SIRPB2,SNPH"
TCGA.AA.3941	20	1223233	1228368	3	-0.1351	NEUTRAL	NA	1	RAD21L1
TCGA.AA.A00N.01A	20	1247251	1460306	30	-0.2904	NEUTRAL	NA	5	"FKBP1A,NSFL1C,SDCBP2,SIRPB2,SNPH"
TCGA.AA.A010.01A	20	1247251	2308748	67	0.3224	NEUTRAL	NA	13	"FKBP1A,LOC388780,NSFL1C,PDYN,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SNPH,STK35,TGM3"
TCGA.AG.3891.01A	20	1276837	1292981	8	-0.3023	NEUTRAL	NA	2	"SDCBP2,SNPH"
TCGA.AG.A01J.01A	20	1291412	25596530	1150	-0.3793	NEUTRAL	NA	150	Too-Many
TCGA.AG.3891.01A	20	1298913	2955773	143	0.2922	NEUTRAL	NA	25	"C20orf141,CPXM1,EBF4,FKBP1A,IDH3B,LOC388780,NOP56,NSFL1C,PCED1A,PDYN,PTPRA,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SNRPB,STK35,TGM3,TGM6,TMC2,TMEM239,VPS16,ZNF343"
TCGA.AG.3611.01A	20	1424357	1447318	9	-0.2072	NEUTRAL	NA	1	NSFL1C
TCGA.AA.A017.01A	20	1438782	23476423	1010	0.0132	NEUTRAL	NA	129	Too-Many
TCGA.AA.A00Q.01A	20	1447318	29633815	1055	0.0431	NEUTRAL	NA	149	Too-Many
TCGA.AG.A020	20	1458258	1924706	221	-0.2063	NEUTRAL	NA	5	"SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG"
TCGA.AG.3611.01A	20	1471886	39657986	2021	0.1998	NEUTRAL	NA	271	Too-Many
TCGA.AY.4070	20	1474949	1486201	5	-0.2116	NEUTRAL	NA	0	None
TCGA.AY.4070	20	1544842	9323399	3324	0.0647	NEUTRAL	NA	67	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,FASTKD5,FERMT1,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,OXT,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PTPRA,RASSF2,RNF24,SIGLEC1,SIRPA,SIRPB1,SIRPG,SLC23A2,SLC4A11,SMOX,SNRPB,SPEF1,STK35,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMX4,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.DY.A1DD	20	1544842	14883126	5555	-0.2074	NEUTRAL	NA	83	"ADAM33,ADRA1D,ANKEF1,AP5S1,ATRN,AVP,BMP2,BTBD3,C20orf141,C20orf194,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,ESF1,FASTKD5,FERMT1,FLRT3,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ISM1,ITPA,JAG1,LAMP5,LOC388780,LRRN4,LZTS3,MACROD2,MAVS,MCM8,MKKS,MRPS26,NDUFAF5,NOP56,OXT,PAK7,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PTPRA,RASSF2,RNF24,SEL1L2,SIGLEC1,SIRPA,SIRPB1,SIRPG,SLC23A2,SLC4A11,SLX4IP,SMOX,SNAP25,SNRPB,SPEF1,SPTLC3,STK35,TASP1,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMX4,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.AA.A02K.01A	20	1600453	3729360	305	-0.3746	NEUTRAL	NA	36	"ADAM33,ATRN,AVP,C20orf141,C20orf194,CPXM1,DDRGK1,EBF4,FASTKD5,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,OXT,PCED1A,PDYN,PTPRA,SIGLEC1,SIRPA,SIRPB1,SIRPG,SLC4A11,SNRPB,STK35,TGM3,TGM6,TMC2,TMEM239,UBOX5,VPS16,ZNF343"
TCGA.CK.5914.01A	20	1610824	2604870	70	0.0563	NEUTRAL	NA	10	"LOC388780,PDYN,SIRPA,SIRPG,SNRPB,STK35,TGM3,TGM6,TMC2,ZNF343"
TCGA.AA.3837	20	1899766	14244856	5215	0.2647	NEUTRAL	NA	80	"ADAM33,ADRA1D,ANKEF1,AP5S1,ATRN,AVP,BMP2,BTBD3,C20orf141,C20orf194,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,ESF1,FASTKD5,FERMT1,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ISM1,ITPA,JAG1,LAMP5,LOC388780,LRRN4,LZTS3,MACROD2,MAVS,MCM8,MKKS,MRPS26,NDUFAF5,NOP56,OXT,PAK7,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PTPRA,RASSF2,RNF24,SEL1L2,SIGLEC1,SIRPA,SLC23A2,SLC4A11,SLX4IP,SMOX,SNAP25,SNRPB,SPEF1,SPTLC3,STK35,TASP1,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMX4,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.CM.6679	20	1919323	21407386	8452	0.01905	NEUTRAL	NA	112	Too-Many
TCGA.DM.A1DB	20	1972459	13434077	5003	0.0159	NEUTRAL	NA	75	"ADAM33,ADRA1D,ANKEF1,AP5S1,ATRN,AVP,BMP2,BTBD3,C20orf141,C20orf194,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,FASTKD5,FERMT1,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ISM1,ITPA,JAG1,LAMP5,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MKKS,MRPS26,NOP56,OXT,PAK7,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PTPRA,RASSF2,RNF24,SIGLEC1,SLC23A2,SLC4A11,SLX4IP,SMOX,SNAP25,SNRPB,SPEF1,SPTLC3,STK35,TASP1,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMX4,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.AG.A020	20	2364385	4514102	787	-0.2006	NEUTRAL	NA	39	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf27,CDC25B,CENPB,CPXM1,DDRGK1,EBF4,FASTKD5,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LZTS3,MAVS,MRPS26,NOP56,OXT,PANK2,PCED1A,PTPRA,RNF24,SIGLEC1,SLC4A11,SMOX,SNRPB,SPEF1,TGM6,TMC2,TMEM239,UBOX5,VPS16,ZNF343"
TCGA.AA.A010.01A	20	2559732	2633883	17	0.1863	NEUTRAL	NA	2	"NOP56,TMC2"
TCGA.AA.A00N.01A	20	2616514	2633247	4	0.0047	NEUTRAL	NA	2	"NOP56,TMC2"
TCGA.AG.3909.01A	20	2633883	2640645	13	-0.2167	NEUTRAL	NA	2	"IDH3B,NOP56"
TCGA.AA.A01Q.01A	20	2633883	2985656	52	-0.0185	NEUTRAL	NA	9	"C20orf141,CPXM1,EBF4,IDH3B,NOP56,PCED1A,PTPRA,TMEM239,VPS16"
TCGA.AA.A010.01A	20	2635028	2644044	13	-0.4195	NEUTRAL	NA	2	"IDH3B,NOP56"
TCGA.CK.5914.01A	20	2686175	2690168	4	0.1316	NEUTRAL	NA	1	EBF4
TCGA.AA.A00N.01A	20	2729158	2846811	32	-0.376	NEUTRAL	NA	7	"C20orf141,CPXM1,EBF4,PCED1A,PTPRA,TMEM239,VPS16"
TCGA.AA.A010.01A	20	2730000	2797219	14	-0.0256	NEUTRAL	NA	4	"C20orf141,CPXM1,EBF4,TMEM239"
TCGA.AF.3914.01A	20	2779335	3147304	53	-0.4466	NEUTRAL	NA	13	"AVP,C20orf141,CPXM1,FASTKD5,GNRH2,LZTS3,MRPS26,OXT,PCED1A,PTPRA,TMEM239,UBOX5,VPS16"
TCGA.AG.A01W.01A	20	2892860	3150430	52	-0.3438	NEUTRAL	NA	8	"AVP,FASTKD5,GNRH2,LZTS3,MRPS26,OXT,PTPRA,UBOX5"
TCGA.CK.5914.01A	20	2967373	2968936	3	0.1794	NEUTRAL	NA	1	PTPRA
TCGA.AG.3909.01A	20	2996467	3234322	52	-0.2836	NEUTRAL	NA	12	"AVP,C20orf194,DDRGK1,FASTKD5,GNRH2,ITPA,LZTS3,MRPS26,OXT,PTPRA,SLC4A11,UBOX5"
TCGA.AA.3678	20	3004020	26289924	9669	0.0019	NEUTRAL	NA	127	Too-Many
TCGA.AA.A01Q.01A	20	3016179	3190134	29	-0.2612	NEUTRAL	NA	10	"AVP,DDRGK1,FASTKD5,GNRH2,ITPA,LZTS3,MRPS26,OXT,PTPRA,UBOX5"
TCGA.AG.4009.01A	20	3018641	3202429	29	0.0012	NEUTRAL	NA	10	"AVP,DDRGK1,FASTKD5,GNRH2,ITPA,LZTS3,MRPS26,OXT,PTPRA,UBOX5"
TCGA.AA.A010.01A	20	3025011	3103918	12	0.0873	NEUTRAL	NA	5	"AVP,GNRH2,MRPS26,OXT,UBOX5"
TCGA.AG.3906.01A	20	3026258	3687671	122	0.3497	NEUTRAL	NA	15	"ADAM33,ATRN,AVP,C20orf194,DDRGK1,FASTKD5,GFRA4,GNRH2,ITPA,LZTS3,MRPS26,OXT,SIGLEC1,SLC4A11,UBOX5"
TCGA.AA.3869	20	3046061	4780748	696	0.3144	NEUTRAL	NA	27	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,C20orf194,C20orf27,CDC25B,CENPB,DDRGK1,FASTKD5,GFRA4,HSPA12B,ITPA,LZTS3,MAVS,OXT,PANK2,PRND,PRNP,RASSF2,RNF24,SIGLEC1,SLC4A11,SMOX,SPEF1,UBOX5"
TCGA.AG.A01W.01A	20	3162124	3166139	4	-0.0818	NEUTRAL	NA	0	None
TCGA.AF.3914.01A	20	3171257	3203992	15	0.3023	NEUTRAL	NA	2	"DDRGK1,ITPA"
TCGA.AA.A010.01A	20	3175829	3245028	29	-0.3491	NEUTRAL	NA	4	"C20orf194,DDRGK1,ITPA,SLC4A11"
TCGA.AA.3930.01A	20	3183812	21314404	879	0.0024	NEUTRAL	NA	86	"ADAM33,ADRA1D,ANKEF1,AP5S1,ATRN,BANF2,BFSP1,BMP2,BTBD3,C20orf194,C20orf196,C20orf27,C20orf78,CDC25B,CDS2,CENPB,CFAP61,CHGB,CRLS1,CRNKL1,CSRP2BP,DDRGK1,DSTN,DTD1,DZANK1,ESF1,FERMT1,FLRT3,GFRA4,GPCPD1,HAO1,HSPA12B,INSM1,ISM1,ITPA,JAG1,KIF16B,KIZ,LAMP5,LRRN4,MACROD2,MAVS,MCM8,MGME1,MKKS,NAA20,NDUFAF5,OTOR,OVOL2,PAK7,PANK2,PCNA,PCSK2,PET117,PLCB1,PLCB4,POLR3F,PRND,PRNP,PROKR2,RALGAPA2,RASSF2,RBBP9,RIN2,RNF24,RRBP1,SCP2D1,SEC23B,SEL1L2,SIGLEC1,SLC23A2,SLC24A3,SLC4A11,SLX4IP,SMOX,SNAP25,SNRPB2,SNX5,SPEF1,SPTLC3,TASP1,TMEM230,TMX4,TRMT6,XRN2,ZNF133"
TCGA.AA.3815.01A	20	3183812	36989303	2148	0.046	NEUTRAL	NA	232	Too-Many
TCGA.AG.A00C.01A	20	3203992	3687671	93	0.3626	NEUTRAL	NA	7	"ADAM33,ATRN,C20orf194,GFRA4,ITPA,SIGLEC1,SLC4A11"
TCGA.AG.3898	20	3228459	14609956	4741	0.2667	NEUTRAL	NA	53	"ADAM33,ADRA1D,ANKEF1,AP5S1,ATRN,BMP2,BTBD3,C20orf194,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GFRA4,GPCPD1,HAO1,HSPA12B,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MAVS,MCM8,MKKS,NDUFAF5,PAK7,PANK2,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,RNF24,SEL1L2,SIGLEC1,SLC23A2,SLX4IP,SMOX,SNAP25,SPEF1,SPTLC3,TASP1,TMEM230,TMX4,TRMT6"
TCGA.AF.3914.01A	20	3236605	3640510	62	0.174	NEUTRAL	NA	3	"ATRN,C20orf194,GFRA4"
TCGA.AG.A01W.01A	20	3245304	3260872	8	-0.3137	NEUTRAL	NA	1	C20orf194
TCGA.AA.A010.01A	20	3251026	3354647	25	0.2845	NEUTRAL	NA	1	C20orf194
TCGA.AA.A01Q.01A	20	3251026	3643927	32	0.1916	NEUTRAL	NA	3	"ATRN,C20orf194,GFRA4"
TCGA.CK.5914.01A	20	3285035	3311265	10	0.333	NEUTRAL	NA	1	C20orf194
TCGA.CM.5868	20	3299053	9684214	2772	0.2349	NEUTRAL	NA	39	"ADAM33,ADRA1D,AP5S1,ATRN,BMP2,C20orf194,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CRLS1,FERMT1,GFRA4,GPCPD1,HAO1,HSPA12B,LAMP5,LRRN4,MAVS,MCM8,PAK7,PANK2,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,RNF24,SIGLEC1,SLC23A2,SMOX,SPEF1,TMEM230,TMX4,TRMT6"
TCGA.CK.5914.01A	20	3312890	3329123	4	-0.0309	NEUTRAL	NA	1	C20orf194
TCGA.AG.3891.01A	20	3363022	3687671	57	0.3063	NEUTRAL	NA	5	"ADAM33,ATRN,C20orf194,GFRA4,SIGLEC1"
TCGA.CL.5918	20	3373711	24805600	9267	-0.0372	NEUTRAL	NA	105	Too-Many
TCGA.G4.6303	20	3391190	14902521	4814	-0.0258	NEUTRAL	NA	52	"ADAM33,ADRA1D,ANKEF1,AP5S1,ATRN,BMP2,BTBD3,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GFRA4,GPCPD1,HAO1,HSPA12B,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MAVS,MCM8,MKKS,NDUFAF5,PAK7,PANK2,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,RNF24,SEL1L2,SIGLEC1,SLC23A2,SLX4IP,SMOX,SNAP25,SPEF1,SPTLC3,TASP1,TMEM230,TMX4,TRMT6"
TCGA.A6.5660	20	3433157	3895698	137	-0.4289	NEUTRAL	NA	12	"ADAM33,AP5S1,ATRN,C20orf27,CDC25B,CENPB,GFRA4,HSPA12B,MAVS,PANK2,SIGLEC1,SPEF1"
TCGA.AG.A01W.01A	20	3463846	3674094	82	-0.2874	NEUTRAL	NA	4	"ADAM33,ATRN,GFRA4,SIGLEC1"
TCGA.AA.A010.01A	20	3545980	3578502	12	0.0695	NEUTRAL	NA	1	ATRN
TCGA.CK.5914.01A	20	3553330	3640510	19	0.0373	NEUTRAL	NA	2	"ATRN,GFRA4"
TCGA.AA.A010.01A	20	3581536	3687671	40	-0.308	NEUTRAL	NA	4	"ADAM33,ATRN,GFRA4,SIGLEC1"
TCGA.AA.A00N.01A	20	3614898	3835224	75	-0.4744	NEUTRAL	NA	11	"ADAM33,AP5S1,ATRN,C20orf27,CDC25B,CENPB,GFRA4,HSPA12B,MAVS,SIGLEC1,SPEF1"
TCGA.AA.A00L.01A	20	3640510	3669137	13	0.3516	NEUTRAL	NA	3	"ADAM33,GFRA4,SIGLEC1"
TCGA.AG.3909.01A	20	3643927	3835224	62	-0.0318	NEUTRAL	NA	10	"ADAM33,AP5S1,C20orf27,CDC25B,CENPB,GFRA4,HSPA12B,MAVS,SIGLEC1,SPEF1"
TCGA.AA.A01Q.01A	20	3649561	3687671	29	-0.4249	NEUTRAL	NA	2	"ADAM33,SIGLEC1"
TCGA.AG.4009.01A	20	3669760	3687671	17	0.3616	NEUTRAL	NA	1	SIGLEC1
TCGA.AG.A01W.01A	20	3684066	3726986	10	-0.1733	NEUTRAL	NA	2	"HSPA12B,SIGLEC1"
TCGA.AA.A01K.01A	20	3686343	25596530	858	-0.4048	NEUTRAL	NA	111	Too-Many
TCGA.AA.A02E.01A	20	3686343	60448747	3079	0.3178	NEUTRAL	NA	400	Too-Many
TCGA.AF.2692	20	3716456	4054469	99	-0.5096	NEUTRAL	NA	9	"AP5S1,C20orf27,CDC25B,CENPB,HSPA12B,MAVS,PANK2,RNF24,SPEF1"
TCGA.AG.4009.01A	20	3719242	3804477	35	-0.1996	NEUTRAL	NA	6	"AP5S1,C20orf27,CDC25B,CENPB,HSPA12B,SPEF1"
TCGA.AA.A02K.01A	20	3733170	13699503	369	-0.3759	NEUTRAL	NA	44	"ADRA1D,ANKEF1,AP5S1,BMP2,BTBD3,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CRLS1,ESF1,FERMT1,GPCPD1,HAO1,HSPA12B,ISM1,JAG1,LAMP5,LRRN4,MAVS,MCM8,MKKS,PAK7,PANK2,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,RNF24,SLC23A2,SLX4IP,SMOX,SNAP25,SPEF1,SPTLC3,TASP1,TMEM230,TMX4,TRMT6"
TCGA.AA.A01Q.01A	20	3740624	3835224	21	-0.3902	NEUTRAL	NA	6	"AP5S1,C20orf27,CDC25B,CENPB,MAVS,SPEF1"
TCGA.AF.3914.01A	20	3780859	21376497	728	0.0898	NEUTRAL	NA	75	"ADRA1D,ANKEF1,AP5S1,BANF2,BFSP1,BMP2,BTBD3,C20orf196,C20orf78,CDC25B,CDS2,CFAP61,CHGB,CRLS1,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,INSM1,ISM1,JAG1,KIF16B,KIZ,LAMP5,LRRN4,MACROD2,MAVS,MCM8,MGME1,MKKS,NAA20,NDUFAF5,NKX2-4,OTOR,OVOL2,PAK7,PANK2,PCNA,PCSK2,PET117,PLCB1,PLCB4,POLR3F,PRND,PRNP,PROKR2,RALGAPA2,RASSF2,RBBP9,RIN2,RNF24,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC23A2,SLC24A3,SLX4IP,SMOX,SNAP25,SNRPB2,SNX5,SPTLC3,TASP1,TMEM230,TMX4,TRMT6,XRN2,ZNF133"
TCGA.AG.3906.01A	20	3802723	30028434	908	0.3113	NEUTRAL	NA	112	Too-Many
TCGA.AA.A010.01A	20	3804477	4202143	30	0.2168	NEUTRAL	NA	6	"ADRA1D,AP5S1,MAVS,PANK2,RNF24,SMOX"
TCGA.AA.A00N.01A	20	3838235	5081410	62	0.2928	NEUTRAL	NA	10	"ADRA1D,MAVS,PANK2,PRND,PRNP,RASSF2,RNF24,SLC23A2,SMOX,TMEM230"
TCGA.AA.A01Q.01A	20	3838235	17489484	410	0.0516	NEUTRAL	NA	47	"ADRA1D,ANKEF1,BFSP1,BMP2,BTBD3,C20orf196,CDS2,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,ISM1,JAG1,KIF16B,LAMP5,LRRN4,MACROD2,MAVS,MCM8,MKKS,NDUFAF5,OTOR,PAK7,PANK2,PCNA,PCSK2,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,RNF24,SEL1L2,SLC23A2,SLX4IP,SMOX,SNAP25,SNRPB2,SPTLC3,TASP1,TMEM230,TMX4,TRMT6"
TCGA.AG.A01W.01A	20	3839178	10572382	282	-0.3239	NEUTRAL	NA	32	"ADRA1D,ANKEF1,BMP2,C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,HAO1,LAMP5,LRRN4,MAVS,MCM8,MKKS,PAK7,PANK2,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,RNF24,SLC23A2,SLX4IP,SMOX,SNAP25,TMEM230,TMX4,TRMT6"
TCGA.A6.2674	20	3845859	62912462	20885	0.1527	NEUTRAL	NA	455	Too-Many
TCGA.AG.3891.01A	20	3846291	30028434	912	0.2453	NEUTRAL	NA	111	Too-Many
TCGA.CK.5914.01A	20	3893058	5093539	57	-0.4291	NEUTRAL	NA	9	"ADRA1D,PANK2,PRND,PRNP,RASSF2,RNF24,SLC23A2,SMOX,TMEM230"
TCGA.DC.6683	20	4038665	14899420	4621	-0.3846	NEUTRAL	NA	39	"ADRA1D,ANKEF1,BMP2,BTBD3,C20orf196,CDS2,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MCM8,MKKS,NDUFAF5,PAK7,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,SEL1L2,SLC23A2,SLX4IP,SMOX,SNAP25,SPTLC3,TASP1,TMEM230,TMX4,TRMT6"
TCGA.AF.2692	20	4057550	4163683	51	-0.4545	NEUTRAL	NA	1	SMOX
TCGA.A6.2675	20	4059748	7118591	1395	0.3217	NEUTRAL	NA	19	"ADRA1D,BMP2,C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,PCNA,PRND,PRNP,PROKR2,RASSF2,SLC23A2,SMOX,TMEM230,TRMT6"
TCGA.AF.2692	20	4169078	55171693	17719	0.0388	NEUTRAL	NA	357	Too-Many
TCGA.A6.6653	20	4169458	14644748	4479	0.0169	NEUTRAL	NA	38	"ADRA1D,ANKEF1,BMP2,BTBD3,C20orf196,CDS2,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MCM8,MKKS,NDUFAF5,PAK7,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,SEL1L2,SLC23A2,SLX4IP,SNAP25,SPTLC3,TASP1,TMEM230,TMX4,TRMT6"
TCGA.AG.3584	20	4202040	5711053	696	-0.2909	NEUTRAL	NA	10	"ADRA1D,CDS2,GPCPD1,PCNA,PRND,PRNP,PROKR2,RASSF2,SLC23A2,TMEM230"
TCGA.A6.6654	20	4235593	9395076	2324	0.1451	NEUTRAL	NA	21	"BMP2,C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,HAO1,LRRN4,MCM8,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,SLC23A2,TMEM230,TMX4,TRMT6"
TCGA.AA.3982	20	4403474	4534869	76	0.3602	NEUTRAL	NA	0	None
TCGA.A6.6782	20	4711766	14563110	4130	0.2563	NEUTRAL	NA	35	"ANKEF1,BMP2,BTBD3,C20orf196,CDS2,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MCM8,MKKS,NDUFAF5,PAK7,PCNA,PLCB1,PLCB4,PROKR2,RASSF2,SEL1L2,SLC23A2,SLX4IP,SNAP25,SPTLC3,TASP1,TMEM230,TMX4,TRMT6"
TCGA.DC.4745	20	4779536	4779988	5	-0.3832	NEUTRAL	NA	1	RASSF2
TCGA.A6.5660	20	4855758	7527719	1146	0.0887	NEUTRAL	NA	14	"BMP2,C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,PCNA,PROKR2,SLC23A2,TMEM230,TRMT6"
TCGA.AG.4009.01A	20	5081410	5843618	42	-0.1531	NEUTRAL	NA	6	"C20orf196,CDS2,GPCPD1,PCNA,PROKR2,TMEM230"
TCGA.AA.A010.01A	20	5100183	5170739	14	0.2003	NEUTRAL	NA	2	"CDS2,PCNA"
TCGA.CK.5914.01A	20	5100183	5548070	24	-0.1577	NEUTRAL	NA	4	"CDS2,GPCPD1,PCNA,PROKR2"
TCGA.AA.A00N.01A	20	5100183	5566781	32	0.3594	NEUTRAL	NA	4	"CDS2,GPCPD1,PCNA,PROKR2"
TCGA.AA.3941	20	5260481	5264220	7	0.2953	NEUTRAL	NA	0	None
TCGA.AG.A02G.01A	20	5282707	7976609	92	0.3019	NEUTRAL	NA	12	"BMP2,C20orf196,CHGB,CRLS1,FERMT1,GPCPD1,HAO1,LRRN4,MCM8,PROKR2,TMX4,TRMT6"
TCGA.5M.AAT4	20	5289480	14595692	3923	-0.0512	NEUTRAL	NA	30	"ANKEF1,BMP2,BTBD3,C20orf196,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MCM8,MKKS,NDUFAF5,PAK7,PLCB1,PLCB4,PROKR2,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1,TMX4,TRMT6"
TCGA.AA.3941	20	5372072	5381649	14	0.1877	NEUTRAL	NA	0	None
TCGA.AA.3982	20	5372072	5381649	14	-0.0039	NEUTRAL	NA	0	None
TCGA.AA.3844	20	5379485	5381649	9	-0.1716	NEUTRAL	NA	0	None
TCGA.A6.5661	20	5543415	15159549	4021	0.0456	NEUTRAL	NA	29	"ANKEF1,BMP2,BTBD3,C20orf196,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MCM8,MKKS,NDUFAF5,PAK7,PLCB1,PLCB4,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1,TMX4,TRMT6"
TCGA.AA.A010.01A	20	5548070	5566781	9	0.0303	NEUTRAL	NA	1	GPCPD1
TCGA.AA.A00N.01A	20	5573914	5974135	37	-0.2219	NEUTRAL	NA	5	"C20orf196,CHGB,GPCPD1,MCM8,TRMT6"
TCGA.AG.3909.01A	20	5896905	5974135	31	0.1805	NEUTRAL	NA	3	"CHGB,MCM8,TRMT6"
TCGA.AA.A010.01A	20	5958485	8698276	64	-0.3253	NEUTRAL	NA	8	"BMP2,CRLS1,FERMT1,HAO1,LRRN4,MCM8,PLCB1,TMX4"
TCGA.AG.4009.01A	20	5966521	5995975	7	0.1224	NEUTRAL	NA	2	"CRLS1,MCM8"
TCGA.AA.3685	20	5969358	6932153	449	-0.164	NEUTRAL	NA	5	"BMP2,CRLS1,FERMT1,LRRN4,MCM8"
TCGA.5M.AATA	20	5981475	26289924	8465	-0.0555	NEUTRAL	NA	87	"ABHD12,ACSS1,ANKEF1,APMAP,BANF2,BFSP1,BMP2,BTBD3,C20orf78,CD93,CFAP61,CRLS1,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,ESF1,FERMT1,FLRT3,FOXA2,GGTLC1,GINS1,GZF1,HAO1,INSM1,ISM1,JAG1,KIF16B,KIZ,LAMP5,LRRN4,MACROD2,MGME1,MKKS,NAA20,NANP,NAPB,NDUFAF5,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAK7,PAX1,PCSK2,PET117,PLCB1,PLCB4,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,SSTR4,SYNDIG1,TASP1,THBD,TMX4,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.A00O.01A	20	6025142	18464112	383	0.0074	NEUTRAL	NA	39	"ANKEF1,BANF2,BFSP1,BMP2,BTBD3,CSRP2BP,DSTN,DZANK1,ESF1,FERMT1,FLRT3,HAO1,ISM1,JAG1,KIF16B,LAMP5,LRRN4,MACROD2,MGME1,MKKS,NDUFAF5,OTOR,OVOL2,PAK7,PCSK2,PET117,PLCB1,PLCB4,POLR3F,RRBP1,SEL1L2,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,TASP1,TMX4,ZNF133"
TCGA.AA.A00N.01A	20	6032754	6758894	17	-0.2257	NEUTRAL	NA	3	"BMP2,FERMT1,LRRN4"
TCGA.CK.5914.01A	20	6032754	8608891	36	-0.1759	NEUTRAL	NA	6	"BMP2,FERMT1,HAO1,LRRN4,PLCB1,TMX4"
TCGA.AG.A00C.01A	20	6032754	13708987	202	0.3421	NEUTRAL	NA	19	"ANKEF1,BMP2,BTBD3,ESF1,FERMT1,HAO1,ISM1,JAG1,LAMP5,LRRN4,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25,SPTLC3,TASP1,TMX4"
TCGA.AA.3982	20	6175063	11466783	2412	0.3042	NEUTRAL	NA	12	"ANKEF1,BMP2,HAO1,JAG1,LAMP5,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25,TMX4"
TCGA.AA.3850	20	6208873	6545696	157	-0.34845	NEUTRAL	NA	0	None
TCGA.AG.A020	20	6208873	26289924	8373	0.0273	NEUTRAL	NA	84	"ABHD12,ACSS1,ANKEF1,APMAP,BANF2,BFSP1,BMP2,BTBD3,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,ESF1,FLRT3,FOXA2,GGTLC1,GINS1,GZF1,HAO1,INSM1,ISM1,JAG1,KIF16B,KIZ,LAMP5,MACROD2,MGME1,MKKS,NAA20,NANP,NAPB,NDUFAF5,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAK7,PAX1,PCSK2,PET117,PLCB1,PLCB4,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,SSTR4,SYNDIG1,TASP1,THBD,TMX4,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3811	20	6222239	14306952	3450	0.1211	NEUTRAL	NA	21	"ANKEF1,BMP2,BTBD3,ESF1,FLRT3,HAO1,ISM1,JAG1,LAMP5,MACROD2,MKKS,NDUFAF5,PAK7,PLCB1,PLCB4,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1,TMX4"
TCGA.AA.3844	20	6231882	6311967	31	-0.0322	NEUTRAL	NA	0	None
TCGA.AA.3844	20	6316327	6494545	108	0.3371	NEUTRAL	NA	0	None
TCGA.D5.6929	20	6361947	14785080	3531	0.2593	NEUTRAL	NA	21	"ANKEF1,BMP2,BTBD3,ESF1,FLRT3,HAO1,ISM1,JAG1,LAMP5,MACROD2,MKKS,NDUFAF5,PAK7,PLCB1,PLCB4,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1,TMX4"
TCGA.AA.3850	20	6559148	6932759	195	-0.14395	NEUTRAL	NA	1	BMP2
TCGA.AA.3941	20	6595645	6662853	29	-0.0519	NEUTRAL	NA	0	None
TCGA.AG.4009.01A	20	6750776	8639138	25	0.2334	NEUTRAL	NA	4	"BMP2,HAO1,PLCB1,TMX4"
TCGA.AA.3941	20	6938636	7913140	425	0.1036	NEUTRAL	NA	1	HAO1
TCGA.AA.3844	20	6938636	7992803	454	0.0682	NEUTRAL	NA	2	"HAO1,TMX4"
TCGA.A6.2675	20	7123360	7728741	267	-0.123	NEUTRAL	NA	0	None
TCGA.A6.5660	20	7532313	19685243	5388	-0.408	NEUTRAL	NA	42	"ANKEF1,BANF2,BFSP1,BTBD3,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,ESF1,FLRT3,HAO1,ISM1,JAG1,KIF16B,LAMP5,MACROD2,MGME1,MKKS,NDUFAF5,OTOR,OVOL2,PAK7,PCSK2,PET117,PLCB1,PLCB4,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,TASP1,TMX4,ZNF133"
TCGA.G4.6314	20	7605417	7607624	3	-0.4971	NEUTRAL	NA	0	None
TCGA.D5.6931	20	7701126	62912462	19116	-0.0163	NEUTRAL	NA	433	Too-Many
TCGA.A6.2675	20	7729272	8761067	422	0.3241	NEUTRAL	NA	3	"HAO1,PLCB1,TMX4"
TCGA.AA.A00N.01A	20	7964374	8608891	11	-0.1063	NEUTRAL	NA	2	"PLCB1,TMX4"
TCGA.AA.A00D.01A	20	7964374	17716281	271	0.0224	NEUTRAL	NA	27	"ANKEF1,BANF2,BFSP1,BTBD3,DSTN,ESF1,FLRT3,ISM1,JAG1,KIF16B,LAMP5,MACROD2,MKKS,NDUFAF5,OTOR,PAK7,PCSK2,PLCB1,PLCB4,RRBP1,SEL1L2,SLX4IP,SNAP25,SNRPB2,SPTLC3,TASP1,TMX4"
TCGA.AG.A02G.01A	20	7980330	29628179	696	-0.403	NEUTRAL	NA	82	"ABHD12,ACSS1,ANKEF1,APMAP,BANF2,BFSP1,BTBD3,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,ESF1,FLRT3,FOXA2,GGTLC1,GINS1,GZF1,INSM1,ISM1,JAG1,KIF16B,KIZ,LAMP5,MACROD2,MGME1,MKKS,NAA20,NANP,NAPB,NDUFAF5,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAK7,PAX1,PCSK2,PET117,PLCB1,PLCB4,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,SSTR4,SYNDIG1,TASP1,THBD,TMX4,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3844	20	7995769	9208345	565	0.3409	NEUTRAL	NA	3	"PLCB1,PLCB4,TMX4"
TCGA.AA.3850	20	8240597	17254293	4045	-0.22235	NEUTRAL	NA	22	"ANKEF1,BTBD3,ESF1,FLRT3,ISM1,JAG1,KIF16B,LAMP5,MACROD2,MKKS,NDUFAF5,OTOR,PAK7,PCSK2,PLCB1,PLCB4,SEL1L2,SLX4IP,SNAP25,SNRPB2,SPTLC3,TASP1"
TCGA.F4.6807	20	8311545	10781435	1148	0.0537	NEUTRAL	NA	9	"ANKEF1,JAG1,LAMP5,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25"
TCGA.DC.4749	20	8588761	9961531	659	-0.3909	NEUTRAL	NA	4	"LAMP5,PAK7,PLCB1,PLCB4"
TCGA.AG.3909.01A	20	8632008	8639138	3	0.2205	NEUTRAL	NA	1	PLCB1
TCGA.CK.5914.01A	20	8678236	8773149	22	-0.2358	NEUTRAL	NA	1	PLCB1
TCGA.AA.A010.01A	20	8702938	10018898	70	0.2164	NEUTRAL	NA	5	"ANKEF1,LAMP5,PAK7,PLCB1,PLCB4"
TCGA.CK.5914.01A	20	8782655	9343526	7	0.3487	NEUTRAL	NA	2	"PLCB1,PLCB4"
TCGA.AA.3941	20	8808834	8812750	6	-0.169	NEUTRAL	NA	1	PLCB1
TCGA.AA.3941	20	8844288	8863244	19	0.3593	NEUTRAL	NA	1	PLCB1
TCGA.AA.3941	20	8870080	8896022	16	-0.2588	NEUTRAL	NA	0	None
TCGA.AA.3941	20	8921184	8949871	21	0.158	NEUTRAL	NA	0	None
TCGA.EI.6514	20	8988411	8989300	2	0.0076	NEUTRAL	NA	0	None
TCGA.EI.6514	20	8990787	9008838	13	-0.3706	NEUTRAL	NA	0	None
TCGA.EI.6514	20	9008888	10300308	579	0.0667	NEUTRAL	NA	5	"ANKEF1,LAMP5,PAK7,PLCB4,SNAP25"
TCGA.DM.A28A	20	9055316	14728971	2241	0.0325	NEUTRAL	NA	17	"ANKEF1,BTBD3,ESF1,FLRT3,ISM1,JAG1,LAMP5,MACROD2,MKKS,NDUFAF5,PAK7,PLCB4,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1"
TCGA.AA.3941	20	9212185	9281419	23	-0.3877	NEUTRAL	NA	1	PLCB4
TCGA.AA.3844	20	9263913	17371508	3612	0.2705	NEUTRAL	NA	21	"ANKEF1,BTBD3,ESF1,FLRT3,ISM1,JAG1,KIF16B,LAMP5,MACROD2,MKKS,NDUFAF5,OTOR,PAK7,PCSK2,PLCB4,SEL1L2,SLX4IP,SNAP25,SNRPB2,SPTLC3,TASP1"
TCGA.CK.5914.01A	20	9346044	9352908	3	-0.4163	NEUTRAL	NA	1	PLCB4
TCGA.AG.3909.01A	20	9353621	9376117	8	-0.4142	NEUTRAL	NA	1	PLCB4
TCGA.CK.5914.01A	20	9374202	13714316	133	-0.1996	NEUTRAL	NA	13	"ANKEF1,BTBD3,ESF1,ISM1,JAG1,LAMP5,MKKS,PAK7,PLCB4,SLX4IP,SNAP25,SPTLC3,TASP1"
TCGA.DM.A28M.01A	20	9391612	58416418	3198	0.156	NEUTRAL	NA	362	Too-Many
TCGA.AY.4071	20	9423752	15970093	2758	0.2486	NEUTRAL	NA	17	"ANKEF1,BTBD3,ESF1,FLRT3,ISM1,JAG1,LAMP5,MACROD2,MKKS,NDUFAF5,PAK7,PLCB4,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1"
TCGA.A6.2677	20	9555780	14718195	1908	-0.1821	NEUTRAL	NA	15	"ANKEF1,BTBD3,ESF1,FLRT3,ISM1,JAG1,MACROD2,MKKS,NDUFAF5,PAK7,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1"
TCGA.A6.2675	20	9625626	12650311	1330	0.3363	NEUTRAL	NA	7	"ANKEF1,BTBD3,JAG1,MKKS,PAK7,SLX4IP,SNAP25"
TCGA.AA.3941	20	9838367	9852653	8	-0.4915	NEUTRAL	NA	0	None
TCGA.DC.4749	20	9965578	26232227	6670	0.3224	NEUTRAL	NA	77	"ABHD12,ACSS1,ANKEF1,APMAP,BANF2,BFSP1,BTBD3,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,ESF1,FLRT3,FOXA2,GGTLC1,GINS1,GZF1,INSM1,ISM1,JAG1,KIF16B,KIZ,MACROD2,MGME1,MKKS,NAA20,NANP,NAPB,NDUFAF5,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,SSTR4,SYNDIG1,TASP1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AG.4009.01A	20	10018898	10032259	6	-0.1676	NEUTRAL	NA	1	ANKEF1
TCGA.AA.3941	20	10188611	10208747	11	-0.019	NEUTRAL	NA	1	SNAP25
TCGA.AA.A010.01A	20	10256099	10627555	29	0.1019	NEUTRAL	NA	4	"JAG1,MKKS,SLX4IP,SNAP25"
TCGA.AA.A00N.01A	20	10256099	11900318	50	0.1172	NEUTRAL	NA	5	"BTBD3,JAG1,MKKS,SLX4IP,SNAP25"
TCGA.EI.6514	20	10303447	11821581	646	-0.4944	NEUTRAL	NA	3	"JAG1,MKKS,SLX4IP"
TCGA.CM.5868	20	10333595	11203314	366	0.2154	NEUTRAL	NA	3	"JAG1,MKKS,SLX4IP"
TCGA.A6.6654	20	10372599	18995999	3733	0.0731	NEUTRAL	NA	33	"BANF2,BFSP1,BTBD3,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,ESF1,FLRT3,ISM1,JAG1,KIF16B,MACROD2,MGME1,MKKS,NDUFAF5,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SEL1L2,SLX4IP,SNRPB2,SNX5,SPTLC3,TASP1,ZNF133"
TCGA.AG.4009.01A	20	10385897	10389224	3	-0.3	NEUTRAL	NA	1	MKKS
TCGA.G4.6625	20	10428775	10833127	157	-0.1905	NEUTRAL	NA	2	"JAG1,SLX4IP"
TCGA.AA.3941	20	10468195	10478938	11	0.0375	NEUTRAL	NA	1	SLX4IP
TCGA.AA.3975	20	10500528	12832505	1005	-0.0476	NEUTRAL	NA	3	"BTBD3,JAG1,SLX4IP"
TCGA.AG.4009.01A	20	10639134	11898962	4	-0.2076	NEUTRAL	NA	2	"BTBD3,JAG1"
TCGA.F4.6807	20	10781703	14520441	1419	-0.384	NEUTRAL	NA	9	"BTBD3,ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.G4.6625	20	10838882	13821603	1251	0.2242	NEUTRAL	NA	6	"BTBD3,ESF1,ISM1,NDUFAF5,SPTLC3,TASP1"
TCGA.AA.3941	20	11076170	11462840	191	0.3748	NEUTRAL	NA	0	None
TCGA.AA.3869	20	11114802	14236784	1212	0.3117	NEUTRAL	NA	8	"BTBD3,ESF1,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3982	20	11469091	11501141	11	-0.2828	NEUTRAL	NA	0	None
TCGA.AA.3872	20	11481203	12649065	457	0.3552	NEUTRAL	NA	1	BTBD3
TCGA.AG.3882	20	11566511	18094731	2886	-0.0222	NEUTRAL	NA	20	"BANF2,BFSP1,BTBD3,DSTN,ESF1,FLRT3,ISM1,KIF16B,MACROD2,MGME1,NDUFAF5,OTOR,OVOL2,PCSK2,RRBP1,SEL1L2,SNRPB2,SNX5,SPTLC3,TASP1"
TCGA.G4.6310	20	11642093	11646823	3	-0.3547	NEUTRAL	NA	0	None
TCGA.AG.3727	20	11707958	12334080	236	-0.0355	NEUTRAL	NA	1	BTBD3
TCGA.EI.6514	20	11823432	12952639	497	0.013	NEUTRAL	NA	1	BTBD3
TCGA.AG.A01W.01A	20	11846888	13704488	55	-0.2677	NEUTRAL	NA	5	"BTBD3,ESF1,ISM1,SPTLC3,TASP1"
TCGA.AA.3941	20	12096896	12220486	36	-0.0931	NEUTRAL	NA	0	None
TCGA.AD.A5EK	20	12247028	12294874	30	0.3218	NEUTRAL	NA	0	None
TCGA.AA.3955	20	12338906	14618547	819	-0.044	NEUTRAL	NA	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3982	20	12385478	12503918	64	0.0373	NEUTRAL	NA	0	None
TCGA.AA.3941	20	12401324	12483700	33	-0.1936	NEUTRAL	NA	0	None
TCGA.AA.3941	20	12484677	12501912	15	0.3772	NEUTRAL	NA	0	None
TCGA.AA.3941	20	12503871	12533010	9	-0.3194	NEUTRAL	NA	0	None
TCGA.AA.3982	20	12517478	12640773	56	0.2218	NEUTRAL	NA	0	None
TCGA.AD.6965	20	12517478	14923389	840	-0.2892	NEUTRAL	NA	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3941	20	12579342	12594924	12	-0.4066	NEUTRAL	NA	0	None
TCGA.AG.3728	20	12630783	12653619	22	0.254	NEUTRAL	NA	0	None
TCGA.AA.3941	20	12632853	12653619	18	-0.4957	NEUTRAL	NA	0	None
TCGA.AA.3941	20	12725100	13013327	142	0.3498	NEUTRAL	NA	1	SPTLC3
TCGA.AA.3975	20	12952639	13814537	325	0.01	NEUTRAL	NA	5	"ESF1,ISM1,NDUFAF5,SPTLC3,TASP1"
TCGA.EI.6514	20	12966050	13301378	200	-0.4897	NEUTRAL	NA	2	"ISM1,SPTLC3"
TCGA.AA.A010.01A	20	12989878	23383582	459	0.0994	NEUTRAL	NA	48	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,ESF1,FLRT3,FOXA2,GZF1,INSM1,ISM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NDUFAF5,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SNRPB2,SNX5,SPTLC3,SSTR4,TASP1,THBD,XRN2,ZNF133"
TCGA.A6.2675	20	13213071	14162284	246	0.3118	NEUTRAL	NA	6	"ESF1,ISM1,MACROD2,NDUFAF5,SEL1L2,TASP1"
TCGA.AA.3967.01A	20	13269165	13567845	13	0.0864	NEUTRAL	NA	2	"ISM1,TASP1"
TCGA.EI.6514	20	13421159	13434077	3	-0.4955	NEUTRAL	NA	1	TASP1
TCGA.AA.A00N.01A	20	13567845	13714316	10	0.363	NEUTRAL	NA	2	"ESF1,TASP1"
TCGA.AA.3697	20	13580842	14054162	104	0.2806	NEUTRAL	NA	5	"ESF1,MACROD2,NDUFAF5,SEL1L2,TASP1"
TCGA.AA.3685	20	13691561	14245837	119	0.1637	NEUTRAL	NA	4	"ESF1,MACROD2,NDUFAF5,SEL1L2"
TCGA.AA.A02K.01A	20	13708968	13779026	25	-0.0604	NEUTRAL	NA	2	"ESF1,NDUFAF5"
TCGA.AG.4009.01A	20	13740297	13756467	7	0.1499	NEUTRAL	NA	1	ESF1
TCGA.AG.A01W.01A	20	13745054	16302854	48	-0.2968	NEUTRAL	NA	6	"ESF1,FLRT3,KIF16B,MACROD2,NDUFAF5,SEL1L2"
TCGA.CK.5914.01A	20	13782085	15411965	31	-0.4592	NEUTRAL	NA	4	"FLRT3,MACROD2,NDUFAF5,SEL1L2"
TCGA.AA.A02K.01A	20	13782096	13982896	24	-0.438	NEUTRAL	NA	3	"MACROD2,NDUFAF5,SEL1L2"
TCGA.AG.A00C.01A	20	13797061	17923710	118	0.2926	NEUTRAL	NA	13	"BANF2,BFSP1,DSTN,FLRT3,KIF16B,MACROD2,NDUFAF5,OTOR,PCSK2,RRBP1,SEL1L2,SNRPB2,SNX5"
TCGA.G4.6625	20	13911290	17380593	1627	0.2178	NEUTRAL	NA	7	"FLRT3,KIF16B,MACROD2,OTOR,PCSK2,SEL1L2,SNRPB2"
TCGA.DM.A0XD	20	13924947	15292532	435	-0.4399	NEUTRAL	NA	3	"FLRT3,MACROD2,SEL1L2"
TCGA.EI.6513	20	13964027	14729868	197	-5.00E-04	NEUTRAL	NA	3	"FLRT3,MACROD2,SEL1L2"
TCGA.F4.6856	20	14000827	14281081	56	-0.5143	NEUTRAL	NA	1	MACROD2
TCGA.G4.6626	20	14031206	14111225	19	0.2714	NEUTRAL	NA	1	MACROD2
TCGA.AA.A02K.01A	20	14032477	14474039	5	0.2639	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.AA.3697	20	14057483	14641671	148	-0.4238	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.F4.6460	20	14101708	14495110	91	0.0707	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.AD.6964	20	14125226	14798516	188	-0.3567	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.D5.6920	20	14155210	14236784	21	-0.4225	NEUTRAL	NA	1	MACROD2
TCGA.AA.3941	20	14163978	14618547	126	0.366	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.AA.3971	20	14244856	14415227	40	-0.0184	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.AA.3869	20	14244856	15239468	364	-0.1151	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.D5.6920	20	14244856	62912462	16387	0.2179	NEUTRAL	NA	415	Too-Many
TCGA.AA.3837	20	14244970	14831624	173	-0.1097	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.F4.6856	20	14282793	14904169	194	-0.0475	NEUTRAL	NA	2	"FLRT3,MACROD2"
TCGA.AA.3982	20	14357684	14492298	22	0.2898	NEUTRAL	NA	1	MACROD2
TCGA.AA.3510	20	14357684	14618547	73	0.0021	NEUTRAL	NA	1	MACROD2
TCGA.D5.5538	20	14428702	14618547	67	-0.2891	NEUTRAL	NA	1	MACROD2
TCGA.AA.3529	20	14467095	14556194	35	-0.0455	NEUTRAL	NA	1	MACROD2
TCGA.F5.6465	20	14478366	15037064	194	0.2612	NEUTRAL	NA	1	MACROD2
TCGA.DM.A28F	20	14495110	14668242	68	-0.1333	NEUTRAL	NA	1	MACROD2
TCGA.AA.3982	20	14501383	14580081	35	0.299	NEUTRAL	NA	1	MACROD2
TCGA.F4.6807	20	14523711	15734954	569	-0.0431	NEUTRAL	NA	1	MACROD2
TCGA.AH.6643	20	14526691	14718195	66	-0.2554	NEUTRAL	NA	1	MACROD2
TCGA.DM.A1DB	20	14533456	14646698	42	-0.1597	NEUTRAL	NA	1	MACROD2
TCGA.AD.6548	20	14556194	15332748	306	-0.4667	NEUTRAL	NA	1	MACROD2
TCGA.DC.4745	20	14562026	14644858	36	0.3422	NEUTRAL	NA	1	MACROD2
TCGA.CM.6172	20	14562459	14629912	28	0.2051	NEUTRAL	NA	1	MACROD2
TCGA.A6.6782	20	14563918	14661105	34	-0.2076	NEUTRAL	NA	1	MACROD2
TCGA.AA.3866	20	14583256	14662881	30	-0.0139	NEUTRAL	NA	1	MACROD2
TCGA.F4.6459	20	14583256	14667414	31	-0.25	NEUTRAL	NA	1	MACROD2
TCGA.A6.2683	20	14584632	14830595	76	-0.2076	NEUTRAL	NA	1	MACROD2
TCGA.D5.6532	20	14596778	14862234	83	-0.0885	NEUTRAL	NA	1	MACROD2
TCGA.AG.3599	20	14622994	15160751	222	-0.1017	NEUTRAL	NA	1	MACROD2
TCGA.AG.3728	20	14627661	14758472	42	0.2591	NEUTRAL	NA	1	MACROD2
TCGA.CM.6172	20	14633077	14746325	38	-0.134	NEUTRAL	NA	1	MACROD2
TCGA.AA.3510	20	14640978	14887229	81	-0.0742	NEUTRAL	NA	1	MACROD2
TCGA.EI.6508	20	14644378	15014096	123	0.0532	NEUTRAL	NA	1	MACROD2
TCGA.D5.7000	20	14644676	14986154	114	-0.2067	NEUTRAL	NA	1	MACROD2
TCGA.DC.4745	20	14646698	14698299	20	-0.087	NEUTRAL	NA	1	MACROD2
TCGA.AY.A69D	20	14658363	14768902	37	-0.2984	NEUTRAL	NA	1	MACROD2
TCGA.AA.3867	20	14658363	25738763	4788	-0.4501	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.A6.2675	20	14661105	14746325	27	0.329	NEUTRAL	NA	1	MACROD2
TCGA.A6.6782	20	14662720	14863546	62	0.2097	NEUTRAL	NA	1	MACROD2
TCGA.D5.6930	20	14662720	15119096	180	-0.4145	NEUTRAL	NA	1	MACROD2
TCGA.DM.A1DA	20	14662881	15014684	114	0.0521	NEUTRAL	NA	1	MACROD2
TCGA.AA.3866	20	14667414	14718195	16	0.3608	NEUTRAL	NA	1	MACROD2
TCGA.DM.A0X9	20	14686508	14922359	86	-0.0083	NEUTRAL	NA	1	MACROD2
TCGA.AZ.6600	20	14686508	14965822	95	-0.2781	NEUTRAL	NA	1	MACROD2
TCGA.AA.3511	20	14690184	15161669	197	-0.0319	NEUTRAL	NA	1	MACROD2
TCGA.DM.A1D8	20	14694426	14868352	53	0.1613	NEUTRAL	NA	1	MACROD2
TCGA.CK.6746	20	14702914	14940686	81	-0.0593	NEUTRAL	NA	1	MACROD2
TCGA.G4.6626	20	14718195	14762970	15	0.009	NEUTRAL	NA	1	MACROD2
TCGA.AF.5654	20	14718195	14811020	26	-0.0513	NEUTRAL	NA	1	MACROD2
TCGA.AG.3896	20	14718195	14907660	66	-0.3827	NEUTRAL	NA	1	MACROD2
TCGA.AG.3898	20	14718195	14940686	79	-0.2456	NEUTRAL	NA	1	MACROD2
TCGA.EI.7002	20	14718195	20079499	2713	0.3326	NEUTRAL	NA	27	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,NAA20,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.AA.3866	20	14720537	14862803	43	-0.1254	NEUTRAL	NA	1	MACROD2
TCGA.A6.5656	20	14720537	25270338	4680	-0.003	NEUTRAL	NA	59	"ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133"
TCGA.D5.5538	20	14729868	15111137	156	-0.4328	NEUTRAL	NA	1	MACROD2
TCGA.G4.6306	20	14734359	14831624	29	-0.4429	NEUTRAL	NA	1	MACROD2
TCGA.AA.A01T	20	14746325	15106977	151	0.1947	NEUTRAL	NA	1	MACROD2
TCGA.A6.2675	20	14758110	14965822	78	-0.3284	NEUTRAL	NA	1	MACROD2
TCGA.DM.A28H	20	14758472	15624155	428	-0.0578	NEUTRAL	NA	1	MACROD2
TCGA.G4.6294	20	14760043	14807598	15	-0.0595	NEUTRAL	NA	1	MACROD2
TCGA.AG.3728	20	14760043	14823471	21	-0.0622	NEUTRAL	NA	1	MACROD2
TCGA.A6.2681	20	14760043	14887229	43	-0.3705	NEUTRAL	NA	1	MACROD2
TCGA.G4.6311	20	14760043	15014096	86	0.3109	NEUTRAL	NA	1	MACROD2
TCGA.AF.A56K	20	14760043	22090386	3289	-0.2968	NEUTRAL	NA	34	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NKX2-2,NKX2-4,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,XRN2,ZNF133"
TCGA.F4.6855	20	14761709	15101463	144	-0.0131	NEUTRAL	NA	1	MACROD2
TCGA.G4.6310	20	14762102	14883126	40	0.2354	NEUTRAL	NA	1	MACROD2
TCGA.AA.3488	20	14768902	14798516	10	0.0488	NEUTRAL	NA	1	MACROD2
TCGA.F4.6569	20	14768902	14807598	11	-0.3921	NEUTRAL	NA	1	MACROD2
TCGA.DC.4745	20	14768902	14844048	22	-0.1946	NEUTRAL	NA	1	MACROD2
TCGA.CM.4752	20	14768902	14887229	39	-0.1013	NEUTRAL	NA	1	MACROD2
TCGA.AG.3727	20	14781683	14823471	15	0.1481	NEUTRAL	NA	1	MACROD2
TCGA.AA.3818	20	14782741	14786005	4	-0.4385	NEUTRAL	NA	1	MACROD2
TCGA.AA.3518	20	14782741	14917185	57	-0.3974	NEUTRAL	NA	1	MACROD2
TCGA.D5.6929	20	14786005	14837964	15	-0.3563	NEUTRAL	NA	1	MACROD2
TCGA.AG.3592	20	14794360	14878295	30	-0.5055	NEUTRAL	NA	1	MACROD2
TCGA.AA.3818	20	14794360	14948964	63	0.3227	NEUTRAL	NA	1	MACROD2
TCGA.A6.5659	20	14798516	15102826	127	0.2534	NEUTRAL	NA	1	MACROD2
TCGA.AA.3488	20	14807598	14908740	44	-0.3987	NEUTRAL	NA	1	MACROD2
TCGA.CA.6715	20	14817017	14818196	3	-0.3429	NEUTRAL	NA	1	MACROD2
TCGA.A6.6780	20	14818196	14940686	50	-0.0783	NEUTRAL	NA	1	MACROD2
TCGA.AH.6897	20	14823471	15039600	79	0.2418	NEUTRAL	NA	1	MACROD2
TCGA.AA.3666	20	14830595	14850761	10	-0.4736	NEUTRAL	NA	1	MACROD2
TCGA.AY.A69D	20	14830595	14941454	49	-0.1536	NEUTRAL	NA	1	MACROD2
TCGA.D5.6529	20	14830595	15246471	191	-0.0869	NEUTRAL	NA	1	MACROD2
TCGA.A6.6137	20	14831624	15086861	114	-0.1449	NEUTRAL	NA	1	MACROD2
TCGA.G4.6314	20	14837327	15154574	152	0.1279	NEUTRAL	NA	1	MACROD2
TCGA.AA.3837	20	14837327	62912462	16242	0.2479	NEUTRAL	NA	414	Too-Many
TCGA.G4.6294	20	14837964	14869902	14	-0.1352	NEUTRAL	NA	1	MACROD2
TCGA.AA.3956	20	14837964	14878295	17	-0.2205	NEUTRAL	NA	1	MACROD2
TCGA.AA.3712	20	14837964	14907596	31	0.2011	NEUTRAL	NA	1	MACROD2
TCGA.AD.6888	20	14837964	14973776	53	-0.4136	NEUTRAL	NA	1	MACROD2
TCGA.D5.6929	20	14844048	14904169	28	0.0086	NEUTRAL	NA	1	MACROD2
TCGA.G5.6233	20	14844048	15101479	121	0.085	NEUTRAL	NA	1	MACROD2
TCGA.F4.6459	20	14850100	15211512	162	-0.4042	NEUTRAL	NA	1	MACROD2
TCGA.AY.6197	20	14862234	15139344	137	-0.5141	NEUTRAL	NA	1	MACROD2
TCGA.AA.3866	20	14862971	14983867	45	-0.4536	NEUTRAL	NA	1	MACROD2
TCGA.A6.6782	20	14865155	14973776	42	-0.021	NEUTRAL	NA	1	MACROD2
TCGA.CM.5868	20	14865155	15154574	139	0.1306	NEUTRAL	NA	1	MACROD2
TCGA.AG.3894	20	14878295	14923389	28	-0.1859	NEUTRAL	NA	1	MACROD2
TCGA.DC.4745	20	14883126	14945838	31	-0.3818	NEUTRAL	NA	1	MACROD2
TCGA.AD.6901	20	14887229	15197889	147	-0.1136	NEUTRAL	NA	1	MACROD2
TCGA.AF.2690	20	14894919	15026744	50	0.1257	NEUTRAL	NA	1	MACROD2
TCGA.AA.3858	20	14895952	15015440	44	0.3077	NEUTRAL	NA	1	MACROD2
TCGA.AA.3875	20	14895952	15043499	58	-0.1488	NEUTRAL	NA	1	MACROD2
TCGA.NH.A50T	20	14899420	14945736	24	-0.144	NEUTRAL	NA	1	MACROD2
TCGA.DM.A28C	20	14899420	62912462	16197	-0.0362	NEUTRAL	NA	414	Too-Many
TCGA.F4.6856	20	14906525	14945838	19	-0.4328	NEUTRAL	NA	1	MACROD2
TCGA.D5.6929	20	14906525	15174440	132	-0.3431	NEUTRAL	NA	1	MACROD2
TCGA.AZ.6605	20	14907596	29586146	4743	-0.1713	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3712	20	14907660	14965822	21	-0.1727	NEUTRAL	NA	1	MACROD2
TCGA.AA.3488	20	14911682	14921233	7	0.1537	NEUTRAL	NA	1	MACROD2
TCGA.AG.3731	20	14915050	15100283	83	-0.0033	NEUTRAL	NA	1	MACROD2
TCGA.AD.6899	20	14915050	15276093	156	-0.0779	NEUTRAL	NA	1	MACROD2
TCGA.AA.3872	20	14917185	15086276	72	-0.0427	NEUTRAL	NA	1	MACROD2
TCGA.AA.3518	20	14921233	62912462	16140	0.0083	NEUTRAL	NA	414	Too-Many
TCGA.AG.3896	20	14921538	15043499	38	-0.348	NEUTRAL	NA	1	MACROD2
TCGA.D5.6535	20	14922359	15015440	23	-0.2035	NEUTRAL	NA	1	MACROD2
TCGA.AA.3956	20	14922359	15070048	57	-0.0577	NEUTRAL	NA	1	MACROD2
TCGA.AA.3529	20	14922359	15082545	65	-0.4326	NEUTRAL	NA	1	MACROD2
TCGA.G4.6310	20	14923389	14973776	10	0.2388	NEUTRAL	NA	1	MACROD2
TCGA.G4.6306	20	14923389	15064451	51	-0.4114	NEUTRAL	NA	1	MACROD2
TCGA.A6.2681	20	14940686	15020630	23	-0.2444	NEUTRAL	NA	1	MACROD2
TCGA.A6.6648	20	14940686	15428110	223	-0.243	NEUTRAL	NA	1	MACROD2
TCGA.EF.5830	20	14940686	17773837	1539	0.0012	NEUTRAL	NA	9	"BANF2,BFSP1,DSTN,KIF16B,MACROD2,OTOR,PCSK2,RRBP1,SNRPB2"
TCGA.A6.6652	20	14941454	15020630	21	0.3323	NEUTRAL	NA	1	MACROD2
TCGA.AY.A69D	20	14945736	14986154	9	-0.4604	NEUTRAL	NA	1	MACROD2
TCGA.AA.3715	20	14945736	15237871	142	-0.3808	NEUTRAL	NA	1	MACROD2
TCGA.CI.6619	20	14948624	15071191	53	0	NEUTRAL	NA	1	MACROD2
TCGA.AA.3947	20	14948624	62912462	16160	0.0096	NEUTRAL	NA	414	Too-Many
TCGA.AA.3818	20	14960099	15086441	62	-0.1212	NEUTRAL	NA	1	MACROD2
TCGA.AA.3968	20	14960099	15216194	119	0.3244	NEUTRAL	NA	1	MACROD2
TCGA.CM.6172	20	14973776	15071191	49	0.0573	NEUTRAL	NA	1	MACROD2
TCGA.AA.3712	20	14973776	15101463	69	0.2758	NEUTRAL	NA	1	MACROD2
TCGA.A6.2678	20	14973776	15118760	75	-0.0156	NEUTRAL	NA	1	MACROD2
TCGA.AF.5654	20	14973776	15122577	84	-0.0106	NEUTRAL	NA	1	MACROD2
TCGA.A6.2675	20	14973776	15235423	132	0.3133	NEUTRAL	NA	1	MACROD2
TCGA.G4.6310	20	14983867	15085204	55	-0.1287	NEUTRAL	NA	1	MACROD2
TCGA.A6.6782	20	14983867	15220836	122	-0.3671	NEUTRAL	NA	1	MACROD2
TCGA.DM.A1DB	20	14986154	15007063	3	-0.2477	NEUTRAL	NA	1	MACROD2
TCGA.D5.7000	20	14995342	15041360	21	0.2858	NEUTRAL	NA	1	MACROD2
TCGA.AY.A69D	20	14995342	15052513	31	-0.0374	NEUTRAL	NA	1	MACROD2
TCGA.AA.3971	20	14995342	15122360	80	-0.0862	NEUTRAL	NA	1	MACROD2
TCGA.G4.6294	20	15007063	15086441	56	-0.1202	NEUTRAL	NA	1	MACROD2
TCGA.G4.6303	20	15007063	25178118	4572	-0.0431	NEUTRAL	NA	58	"ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133"
TCGA.DM.A0X9	20	15007353	15287315	138	0.0794	NEUTRAL	NA	1	MACROD2
TCGA.AA.3660	20	15007729	15144762	91	-0.0023	NEUTRAL	NA	1	MACROD2
TCGA.G4.6311	20	15014684	15044092	19	-0.08	NEUTRAL	NA	1	MACROD2
TCGA.DM.A28F	20	15014684	15045411	23	-0.0981	NEUTRAL	NA	1	MACROD2
TCGA.EI.6508	20	15014684	15106977	62	0.3706	NEUTRAL	NA	1	MACROD2
TCGA.CM.5344	20	15015185	23664560	3936	-0.2985	NEUTRAL	NA	47	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST11,CST3,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.DC.4745	20	15020017	15216864	105	-0.3554	NEUTRAL	NA	1	MACROD2
TCGA.A6.6652	20	15025830	15053279	21	-0.0614	NEUTRAL	NA	1	MACROD2
TCGA.A6.2681	20	15025830	15724398	395	0.223	NEUTRAL	NA	1	MACROD2
TCGA.CM.4752	20	15037064	15120322	61	-0.2864	NEUTRAL	NA	1	MACROD2
TCGA.D5.6532	20	15039600	24707911	4375	-0.0136	NEUTRAL	NA	53	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,XRN2,ZNF133"
TCGA.AH.6897	20	15041360	15144762	74	-0.3373	NEUTRAL	NA	1	MACROD2
TCGA.D5.7000	20	15041577	15070698	24	-0.0631	NEUTRAL	NA	1	MACROD2
TCGA.F4.6569	20	15043499	15066459	20	-0.2261	NEUTRAL	NA	1	MACROD2
TCGA.AG.3896	20	15043622	15274881	112	-0.0227	NEUTRAL	NA	1	MACROD2
TCGA.AA.3875	20	15043622	26253681	4691	0.1619	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.G4.6311	20	15044366	15276093	112	0.2831	NEUTRAL	NA	1	MACROD2
TCGA.AF.2689	20	15052513	15099244	32	-0.3206	NEUTRAL	NA	1	MACROD2
TCGA.AG.4008	20	15053066	15216864	83	0.1873	NEUTRAL	NA	1	MACROD2
TCGA.G4.6306	20	15065373	21810284	3101	-0.0448	NEUTRAL	NA	34	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NKX2-2,NKX2-4,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,XRN2,ZNF133"
TCGA.T9.A92H	20	15070048	15395352	142	-0.0072	NEUTRAL	NA	1	MACROD2
TCGA.AZ.6600	20	15070698	15229814	82	-0.11	NEUTRAL	NA	1	MACROD2
TCGA.D5.7000	20	15071191	62912462	16070	0.3626	NEUTRAL	NA	414	Too-Many
TCGA.AG.3898	20	15078342	15086861	12	-0.097	NEUTRAL	NA	1	MACROD2
TCGA.CM.6172	20	15078342	15289700	95	-0.3632	NEUTRAL	NA	1	MACROD2
TCGA.AA.3955	20	15078342	21198960	2966	-0.4164	NEUTRAL	NA	30	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,OTOR,OVOL2,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.AA.A03J	20	15081315	23749713	3858	-0.2997	NEUTRAL	NA	49	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST3,CST4,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.AD.6964	20	15081745	15340476	110	-0.339	NEUTRAL	NA	1	MACROD2
TCGA.AA.3688	20	15085204	15144762	42	0.2084	NEUTRAL	NA	1	MACROD2
TCGA.G4.6310	20	15085295	15101463	13	0.2248	NEUTRAL	NA	1	MACROD2
TCGA.D5.6535	20	15085364	15230950	74	-0.3767	NEUTRAL	NA	1	MACROD2
TCGA.AD.6888	20	15085364	26289924	4660	-0.0356	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3966	20	15086861	15872969	433	-0.2396	NEUTRAL	NA	1	MACROD2
TCGA.EI.6513	20	15095267	26289924	4660	-0.0141	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.F4.6856	20	15096767	15276093	79	-0.3574	NEUTRAL	NA	1	MACROD2
TCGA.A6.2677	20	15099244	16857043	954	-0.2633	NEUTRAL	NA	4	"KIF16B,MACROD2,OTOR,SNRPB2"
TCGA.F4.6569	20	15099513	15120322	15	-0.2226	NEUTRAL	NA	1	MACROD2
TCGA.DM.A28F	20	15101479	15219032	48	-0.2138	NEUTRAL	NA	1	MACROD2
TCGA.F4.6855	20	15101479	62912462	16082	0.2989	NEUTRAL	NA	414	Too-Many
TCGA.AZ.6607	20	15102826	15274881	70	-0.0668	NEUTRAL	NA	1	MACROD2
TCGA.EI.6508	20	15111137	15122604	13	-0.0918	NEUTRAL	NA	1	MACROD2
TCGA.A6.6653	20	15111137	15137153	19	-0.464	NEUTRAL	NA	1	MACROD2
TCGA.DM.A28A	20	15118512	15125971	14	-0.228	NEUTRAL	NA	1	MACROD2
TCGA.AG.3726	20	15118512	15139546	21	0.0117	NEUTRAL	NA	1	MACROD2
TCGA.AG.3885	20	15118512	26228268	4637	-0.0052	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.5M.AAT4	20	15119096	15382918	106	-0.2642	NEUTRAL	NA	1	MACROD2
TCGA.DY.A1DD	20	15119796	26289924	4643	-0.2397	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.D5.6930	20	15119796	62912462	16084	-0.0116	NEUTRAL	NA	414	Too-Many
TCGA.F4.6569	20	15120743	62912462	16107	0.2342	NEUTRAL	NA	414	Too-Many
TCGA.EI.6512	20	15125337	20426977	2683	-0.408	NEUTRAL	NA	29	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIF16B,MACROD2,MGME1,NAA20,OTOR,OVOL2,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.AY.A8YK	20	15125337	26289924	4634	0.3594	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.EI.6508	20	15125337	62912462	16098	0.3613	NEUTRAL	NA	414	Too-Many
TCGA.AA.A02O	20	15135937	15688826	305	-0.0184	NEUTRAL	NA	1	MACROD2
TCGA.AY.6197	20	15139546	62912462	15709	-0.0287	NEUTRAL	NA	414	Too-Many
TCGA.AG.3726	20	15143793	15157913	7	-0.4094	NEUTRAL	NA	1	MACROD2
TCGA.D5.5538	20	15143793	15180180	16	-0.4026	NEUTRAL	NA	1	MACROD2
TCGA.EI.6917	20	15143805	62912462	16056	-0.0565	NEUTRAL	NA	414	Too-Many
TCGA.AH.6897	20	15150729	15223744	30	0.2229	NEUTRAL	NA	1	MACROD2
TCGA.AA.3529	20	15150729	15230950	34	-0.1313	NEUTRAL	NA	1	MACROD2
TCGA.AA.3664	20	15150729	32346273	5183	0.0112	NEUTRAL	NA	113	Too-Many
TCGA.AA.3845	20	15150729	62912462	16077	0.3784	NEUTRAL	NA	414	Too-Many
TCGA.G4.6294	20	15154705	15246983	40	0.1073	NEUTRAL	NA	1	MACROD2
TCGA.A6.5661	20	15160751	55040167	12961	-0.2954	NEUTRAL	NA	316	Too-Many
TCGA.AA.3971	20	15161164	15215963	13	0.0976	NEUTRAL	NA	1	MACROD2
TCGA.D5.5540	20	15161669	26289924	4610	-0.1314	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3511	20	15166774	26289924	4609	0.2254	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.CK.6746	20	15166774	62912462	16047	-0.0131	NEUTRAL	NA	414	Too-Many
TCGA.AA.3866	20	15180180	15219499	11	-0.1724	NEUTRAL	NA	1	MACROD2
TCGA.AF.4110	20	15180180	16268506	664	-0.499	NEUTRAL	NA	2	"KIF16B,MACROD2"
TCGA.D5.6929	20	15180180	26289924	4603	0.2281	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.CM.4752	20	15181293	15229946	20	-0.0799	NEUTRAL	NA	1	MACROD2
TCGA.D5.5538	20	15181293	62912462	16054	0.1867	NEUTRAL	NA	414	Too-Many
TCGA.AZ.6606	20	15193073	26289924	4596	-0.2697	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.A022	20	15197889	62912462	16044	-0.0059	NEUTRAL	NA	414	Too-Many
TCGA.A6.6780	20	15211512	24504033	4202	0.0007	NEUTRAL	NA	53	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,XRN2,ZNF133"
TCGA.AA.3510	20	15211512	62912462	16060	0.012	NEUTRAL	NA	414	Too-Many
TCGA.AD.6901	20	15211512	62912462	16023	0.3223	NEUTRAL	NA	414	Too-Many
TCGA.AA.3956	20	15215963	15237871	21	-0.009	NEUTRAL	NA	1	MACROD2
TCGA.F4.6459	20	15215963	15237871	21	-0.1242	NEUTRAL	NA	1	MACROD2
TCGA.AA.3982	20	15215963	15514897	148	0.0865	NEUTRAL	NA	1	MACROD2
TCGA.AH.6643	20	15215963	15519612	153	-0.2592	NEUTRAL	NA	1	MACROD2
TCGA.D5.6898	20	15215963	24304764	4111	0.1964	NEUTRAL	NA	52	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.AA.3977	20	15215963	62912462	16039	0.1047	NEUTRAL	NA	414	Too-Many
TCGA.A6.2683	20	15216194	15397927	76	0.2468	NEUTRAL	NA	1	MACROD2
TCGA.A6.2678	20	15216864	22460863	3243	-0.0035	NEUTRAL	NA	34	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NKX2-2,NKX2-4,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,XRN2,ZNF133"
TCGA.A6.6653	20	15216864	62912462	16060	-0.0243	NEUTRAL	NA	414	Too-Many
TCGA.AG.3727	20	15219032	17741757	1394	0.0231	NEUTRAL	NA	9	"BANF2,BFSP1,DSTN,KIF16B,MACROD2,OTOR,PCSK2,RRBP1,SNRPB2"
TCGA.AA.3812	20	15219032	26253681	4600	0.0327	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3866	20	15220000	15968879	432	0.2793	NEUTRAL	NA	1	MACROD2
TCGA.AG.3726	20	15220529	15323281	38	-0.0939	NEUTRAL	NA	1	MACROD2
TCGA.A6.6782	20	15222774	15315524	30	-0.0508	NEUTRAL	NA	1	MACROD2
TCGA.AG.3728	20	15223631	15274881	16	-0.1838	NEUTRAL	NA	1	MACROD2
TCGA.AA.3860	20	15223631	26266312	4593	-0.0415	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AZ.6600	20	15229946	62912462	16037	0.2795	NEUTRAL	NA	414	Too-Many
TCGA.AA.3529	20	15234768	15317217	26	-0.4792	NEUTRAL	NA	1	MACROD2
TCGA.G4.6626	20	15234768	15372191	45	-0.4021	NEUTRAL	NA	1	MACROD2
TCGA.D5.6535	20	15234768	26289924	4587	-0.0109	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.DC.6683	20	15235423	25846493	4542	-0.4022	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.A6.A56B	20	15235423	30533948	4690	-0.0448	NEUTRAL	NA	82	"ABHD12,ACSS1,APMAP,BANF2,BCL2L1,BFSP1,C20orf78,CD93,CFAP61,COX4I2,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DSTN,DTD1,DUSP15,DZANK1,ENTPD6,FOXA2,FOXS1,GGTLC1,GINS1,GZF1,HM13,ID1,INSM1,KIF16B,KIZ,MACROD2,MGME1,MYLK2,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PDRG1,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,REM1,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,TPX2,TTLL9,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3971	20	15237051	15237871	3	-0.3647	NEUTRAL	NA	1	MACROD2
TCGA.AG.3883	20	15237871	20201577	2549	-0.2857	NEUTRAL	NA	27	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,NAA20,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.AG.3592	20	15239468	15737041	284	-0.0147	NEUTRAL	NA	1	MACROD2
TCGA.AF.3913	20	15239468	15786978	301	-0.2228	NEUTRAL	NA	1	MACROD2
TCGA.AA.3715	20	15239468	16141155	527	-0.0232	NEUTRAL	NA	1	MACROD2
TCGA.AA.3864	20	15239468	23192537	3577	0.0738	NEUTRAL	NA	38	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,FOXA2,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NKX2-2,NKX2-4,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.AA.3869	20	15246471	15846680	341	0.2922	NEUTRAL	NA	1	MACROD2
TCGA.AA.3821	20	15246471	62912462	16037	-0.0361	NEUTRAL	NA	414	Too-Many
TCGA.AA.3811	20	15246983	24557863	4194	0.3378	NEUTRAL	NA	53	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,XRN2,ZNF133"
TCGA.D5.6529	20	15246983	62912462	16047	0.1984	NEUTRAL	NA	414	Too-Many
TCGA.AA.3994	20	15276093	62912462	16019	0.0323	NEUTRAL	NA	414	Too-Many
TCGA.F4.6856	20	15281332	58824041	14682	0.0062	NEUTRAL	NA	351	Too-Many
TCGA.CL.5917	20	15289700	19642680	2196	-0.0547	NEUTRAL	NA	23	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.CM.6172	20	15291551	62912462	16040	0.3284	NEUTRAL	NA	414	Too-Many
TCGA.DM.A0XD	20	15296030	18400754	1603	0.1064	NEUTRAL	NA	16	"BANF2,BFSP1,CSRP2BP,DSTN,DZANK1,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,PET117,RRBP1,SNRPB2,SNX5,ZNF133"
TCGA.A6.6782	20	15315657	30016442	4609	0.3105	NEUTRAL	NA	69	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3529	20	15317977	15566530	150	-0.0299	NEUTRAL	NA	1	MACROD2
TCGA.DM.A28A	20	15323281	24182991	4012	-0.0042	NEUTRAL	NA	52	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.AD.6548	20	15337954	62912462	15975	0.3247	NEUTRAL	NA	414	Too-Many
TCGA.DM.A0X9	20	15340476	15693943	234	-0.199	NEUTRAL	NA	1	MACROD2
TCGA.A6.4105	20	15340476	17239517	1111	-0.2665	NEUTRAL	NA	5	"KIF16B,MACROD2,OTOR,PCSK2,SNRPB2"
TCGA.AD.6964	20	15341934	62912462	15998	-0.0445	NEUTRAL	NA	414	Too-Many
TCGA.AH.6897	20	15349702	16176202	530	0.2281	NEUTRAL	NA	1	MACROD2
TCGA.CA.5254	20	15352685	15810799	287	-0.008	NEUTRAL	NA	1	MACROD2
TCGA.AA.3956	20	15353908	15411322	39	0.0578	NEUTRAL	NA	1	MACROD2
TCGA.CM.5860	20	15372191	15451178	55	-0.4029	NEUTRAL	NA	1	MACROD2
TCGA.G4.6626	20	15379675	15980918	388	0.2068	NEUTRAL	NA	1	MACROD2
TCGA.A6.3807	20	15382354	15424694	34	-0.3565	NEUTRAL	NA	1	MACROD2
TCGA.DC.6682	20	15382809	15382918	2	-0.0373	NEUTRAL	NA	1	MACROD2
TCGA.A6.2683	20	15399983	15404289	5	-0.4925	NEUTRAL	NA	1	MACROD2
TCGA.EI.6514	20	15402079	15404649	6	0.1868	NEUTRAL	NA	1	MACROD2
TCGA.G4.6295	20	15404289	17853249	1387	-0.4079	NEUTRAL	NA	9	"BANF2,BFSP1,DSTN,KIF16B,MACROD2,OTOR,PCSK2,RRBP1,SNRPB2"
TCGA.A6.2683	20	15404424	15404649	4	0.0964	NEUTRAL	NA	1	MACROD2
TCGA.AA.3848	20	15411169	30029511	4573	0.0239	NEUTRAL	NA	70	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.A6.3807	20	15427249	15891972	293	0.157	NEUTRAL	NA	1	MACROD2
TCGA.AZ.4308	20	15436001	15607677	119	-0.2375	NEUTRAL	NA	1	MACROD2
TCGA.DC.6682	20	15443445	15471214	21	-0.2201	NEUTRAL	NA	1	MACROD2
TCGA.CM.5860	20	15453864	25291847	4372	-0.0183	NEUTRAL	NA	60	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133"
TCGA.DC.6682	20	15475277	62912462	15930	0.1468	NEUTRAL	NA	414	Too-Many
TCGA.DM.A28F	20	15477703	15720961	162	0.133	NEUTRAL	NA	1	MACROD2
TCGA.CK.5914.01A	20	15480359	16493421	34	0.1677	NEUTRAL	NA	2	"KIF16B,MACROD2"
TCGA.AA.3543	20	15495388	62912462	15910	-0.0146	NEUTRAL	NA	414	Too-Many
TCGA.AH.6643	20	15519975	62912462	15901	0.2689	NEUTRAL	NA	414	Too-Many
TCGA.AZ.5403	20	15564113	15743911	123	-0.3757	NEUTRAL	NA	1	MACROD2
TCGA.AA.3529	20	15566579	62912462	15863	0.3383	NEUTRAL	NA	414	Too-Many
TCGA.AA.3660	20	15571006	18014862	1333	-0.0008	NEUTRAL	NA	12	"BANF2,BFSP1,DSTN,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,RRBP1,SNRPB2,SNX5"
TCGA.AF.2689	20	15638104	24528064	3979	-0.401	NEUTRAL	NA	53	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,XRN2,ZNF133"
TCGA.F4.6807	20	15736352	15820840	52	-0.5094	NEUTRAL	NA	1	MACROD2
TCGA.AZ.5403	20	15761191	23824925	3582	0.1023	NEUTRAL	NA	50	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.AF.3913	20	15787998	35722829	5348	0.348	NEUTRAL	NA	162	Too-Many
TCGA.CA.5254	20	15812492	62912462	15681	0.3159	NEUTRAL	NA	414	Too-Many
TCGA.F4.6807	20	15824413	62912462	15673	0.1509	NEUTRAL	NA	414	Too-Many
TCGA.AZ.4308	20	15852130	26288534	4240	-0.2099	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3966	20	15874188	62912462	15671	0.2456	NEUTRAL	NA	414	Too-Many
TCGA.AA.3685	20	15878090	26115304	4207	0.2535	NEUTRAL	NA	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AG.3725	20	15897767	62349624	15534	0.3747	NEUTRAL	NA	396	Too-Many
TCGA.A6.6648	20	15944632	16213704	193	-0.2891	NEUTRAL	NA	1	MACROD2
TCGA.G4.6626	20	16031426	16056179	18	0.2379	NEUTRAL	NA	1	MACROD2
TCGA.AA.3715	20	16145274	52112191	11074	0.0777	NEUTRAL	NA	304	Too-Many
TCGA.A6.6648	20	16215762	26239963	3985	0.1378	NEUTRAL	NA	63	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.CA.6719	20	16252980	16257077	3	-0.3476	NEUTRAL	NA	1	KIF16B
TCGA.AA.A02K.01A	20	16253851	16362275	11	0.2765	NEUTRAL	NA	1	KIF16B
TCGA.AG.A01W.01A	20	16333406	17535656	49	-0.2528	NEUTRAL	NA	5	"BFSP1,KIF16B,OTOR,PCSK2,SNRPB2"
TCGA.AA.A02K.01A	20	16385406	22564780	325	-0.3523	NEUTRAL	NA	34	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,FOXA2,INSM1,KIF16B,KIZ,MGME1,NAA20,NKX2-2,NKX2-4,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,XRN2,ZNF133"
TCGA.CK.5914.01A	20	16496142	17489484	30	-0.2341	NEUTRAL	NA	5	"BFSP1,KIF16B,OTOR,PCSK2,SNRPB2"
TCGA.CM.6164	20	16506015	16793007	177	0.3733	NEUTRAL	NA	3	"KIF16B,OTOR,SNRPB2"
TCGA.EI.6514	20	16547565	16932591	217	-0.4881	NEUTRAL	NA	3	"KIF16B,OTOR,SNRPB2"
TCGA.AF.4110	20	16555031	18795708	1002	-0.4892	NEUTRAL	NA	20	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,MGME1,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SNRPB2,SNX5,ZNF133"
TCGA.F5.6465	20	16662744	16667771	11	-0.1471	NEUTRAL	NA	0	None
TCGA.DM.A1HA	20	16682934	17196879	252	0.0572	NEUTRAL	NA	2	"OTOR,SNRPB2"
TCGA.AA.3975	20	16783687	24565049	3286	0.0161	NEUTRAL	NA	49	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIZ,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,SYNDIG1,THBD,XRN2,ZNF133"
TCGA.CM.6164	20	16798023	17447009	315	-0.1297	NEUTRAL	NA	1	PCSK2
TCGA.EI.6883	20	16808237	26289924	3638	0.3668	NEUTRAL	NA	60	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3667	20	16832192	16833222	2	0.1221	NEUTRAL	NA	0	None
TCGA.AA.3941	20	16900097	16902363	6	-0.4047	NEUTRAL	NA	0	None
TCGA.AA.3850	20	17259591	37785437	5121	0.28725	NEUTRAL	NA	181	Too-Many
TCGA.AD.6965	20	17320802	18005881	332	-0.1802	NEUTRAL	NA	8	"BANF2,BFSP1,DSTN,MGME1,OVOL2,PCSK2,RRBP1,SNX5"
TCGA.AA.3941	20	17357572	17380885	16	0.3133	NEUTRAL	NA	1	PCSK2
TCGA.AA.3982	20	17372876	17380885	6	-0.4829	NEUTRAL	NA	1	PCSK2
TCGA.CM.6164	20	17447874	24648409	2995	0.2422	NEUTRAL	NA	49	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIZ,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,SYNDIG1,THBD,XRN2,ZNF133"
TCGA.DY.A1DG	20	17462149	18082724	275	0.3733	NEUTRAL	NA	8	"BANF2,BFSP1,DSTN,MGME1,OVOL2,PCSK2,RRBP1,SNX5"
TCGA.AA.A01Q.01A	20	17492571	17622425	24	-0.3456	NEUTRAL	NA	3	"BFSP1,DSTN,RRBP1"
TCGA.AG.3909.01A	20	17492571	18167893	54	0.0831	NEUTRAL	NA	9	"BANF2,BFSP1,CSRP2BP,DSTN,MGME1,OVOL2,PET117,RRBP1,SNX5"
TCGA.AG.A01W.01A	20	17550061	18383852	63	-0.3611	NEUTRAL	NA	10	"BANF2,CSRP2BP,DSTN,DZANK1,MGME1,OVOL2,PET117,RRBP1,SNX5,ZNF133"
TCGA.AA.A00L.01A	20	17595333	17617172	16	0.3496	NEUTRAL	NA	1	RRBP1
TCGA.AA.A00N.01A	20	17595333	17716281	23	0.0575	NEUTRAL	NA	2	"BANF2,RRBP1"
TCGA.DM.A1DB	20	17611788	26197930	3260	-0.0173	NEUTRAL	NA	57	"ABHD12,ACSS1,APMAP,BANF2,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.A01Q.01A	20	17623595	22562451	175	0.0963	NEUTRAL	NA	28	"BANF2,C20orf78,CFAP61,CRNKL1,CSRP2BP,DTD1,DZANK1,FOXA2,INSM1,KIZ,MGME1,NAA20,NKX2-2,NKX2-4,OVOL2,PAX1,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,XRN2,ZNF133"
TCGA.F5.6864	20	17749898	17752671	4	0.0829	NEUTRAL	NA	0	None
TCGA.AG.3727	20	17749898	29586146	3213	0.0419	NEUTRAL	NA	55	"ABHD12,ACSS1,APMAP,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.EF.5830	20	17790477	26289924	3154	0.038	NEUTRAL	NA	55	"ABHD12,ACSS1,APMAP,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.A00D.01A	20	17922925	18470379	40	0.2958	NEUTRAL	NA	9	"CSRP2BP,DZANK1,MGME1,OVOL2,PET117,POLR3F,RBBP9,SNX5,ZNF133"
TCGA.DY.A1DG	20	18083330	18513531	143	0.0179	NEUTRAL	NA	7	"CSRP2BP,DZANK1,PET117,POLR3F,RBBP9,SEC23B,ZNF133"
TCGA.T9.A92H	20	18113485	26115304	3033	0.2455	NEUTRAL	NA	52	"ABHD12,ACSS1,APMAP,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AG.A00C.01A	20	18142999	19634652	74	0.2794	NEUTRAL	NA	10	"C20orf78,CSRP2BP,DTD1,DZANK1,POLR3F,RBBP9,SCP2D1,SEC23B,SLC24A3,ZNF133"
TCGA.DC.6154	20	18154228	20927545	1234	0.3649	NEUTRAL	NA	16	"C20orf78,CFAP61,CRNKL1,CSRP2BP,DTD1,DZANK1,INSM1,NAA20,POLR3F,RALGAPA2,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3,ZNF133"
TCGA.AA.3660	20	18348279	18783254	164	-0.003	NEUTRAL	NA	5	"DTD1,DZANK1,POLR3F,RBBP9,SEC23B"
TCGA.AG.A01W.01A	20	18453048	19951013	51	-0.3117	NEUTRAL	NA	8	"C20orf78,DTD1,POLR3F,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3"
TCGA.AA.A00D.01A	20	18470980	25276959	244	3.00E-04	NEUTRAL	NA	43	"ABHD12,ACSS1,APMAP,C20orf78,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DTD1,ENTPD6,FOXA2,GGTLC1,GZF1,INSM1,KIZ,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3,SSTR4,SYNDIG1,THBD,VSX1,XRN2"
TCGA.AA.A00O.01A	20	18474551	20032939	73	0.0495	NEUTRAL	NA	9	"C20orf78,CRNKL1,DTD1,NAA20,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3"
TCGA.DY.A1DG	20	18513604	19833436	655	0.3493	NEUTRAL	NA	5	"C20orf78,DTD1,SCP2D1,SEC23B,SLC24A3"
TCGA.G4.6295	20	18610873	20906380	1076	-0.3951	NEUTRAL	NA	10	"C20orf78,CFAP61,CRNKL1,DTD1,INSM1,NAA20,RALGAPA2,RIN2,SCP2D1,SLC24A3"
TCGA.F5.6864	20	18659536	18777076	65	-0.4706	NEUTRAL	NA	1	DTD1
TCGA.D5.6533	20	18743216	18743788	3	-0.306	NEUTRAL	NA	1	DTD1
TCGA.F5.6864	20	18777979	20604695	894	-0.0149	NEUTRAL	NA	9	"C20orf78,CFAP61,CRNKL1,INSM1,NAA20,RALGAPA2,RIN2,SCP2D1,SLC24A3"
TCGA.AA.3941	20	18902227	18911345	5	-0.1548	NEUTRAL	NA	0	None
TCGA.EI.6884	20	18908880	25706556	2716	0.0729	NEUTRAL	NA	42	"ABHD12,ACSS1,APMAP,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,RIN2,SLC24A3,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF337"
TCGA.D5.6533	20	19022893	21703563	1115	-0.1816	NEUTRAL	NA	12	"CFAP61,CRNKL1,INSM1,KIZ,NAA20,NKX2-2,NKX2-4,PAX1,RALGAPA2,RIN2,SLC24A3,XRN2"
TCGA.AY.4071	20	19135171	21670644	1044	-0.389	NEUTRAL	NA	11	"CFAP61,CRNKL1,INSM1,KIZ,NAA20,NKX2-2,NKX2-4,RALGAPA2,RIN2,SLC24A3,XRN2"
TCGA.G5.6641	20	19308463	52643154	9778	0.247	NEUTRAL	NA	285	Too-Many
TCGA.AA.3660	20	19384817	19394804	7	-0.1856	NEUTRAL	NA	1	SLC24A3
TCGA.CM.5868	20	19500069	20083395	373	0.2316	NEUTRAL	NA	5	"CFAP61,CRNKL1,NAA20,RIN2,SLC24A3"
TCGA.AU.3779	20	19507862	23381900	1538	0.1453	NEUTRAL	NA	19	"CD93,CFAP61,CRNKL1,FOXA2,GZF1,INSM1,KIZ,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,RALGAPA2,RIN2,SLC24A3,SSTR4,THBD,XRN2"
TCGA.AG.A01L.01A	20	19565588	25276187	269	0.2575	NEUTRAL	NA	38	"ABHD12,ACSS1,APMAP,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GZF1,INSM1,KIZ,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,RIN2,SLC24A3,SSTR4,SYNDIG1,THBD,VSX1,XRN2"
TCGA.AG.3909.01A	20	19634652	19665697	6	-0.0969	NEUTRAL	NA	1	SLC24A3
TCGA.AG.3882	20	19637341	21098318	652	-0.0162	NEUTRAL	NA	7	"CFAP61,CRNKL1,INSM1,NAA20,RALGAPA2,RIN2,SLC24A3"
TCGA.AG.A00C.01A	20	19698108	19870165	3	-0.0671	NEUTRAL	NA	2	"RIN2,SLC24A3"
TCGA.A6.5667	20	19719835	19724042	10	-0.21	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	20	19954270	19972100	12	0.2713	NEUTRAL	NA	1	RIN2
TCGA.AG.A01W.01A	20	19973934	21144188	81	-0.2223	NEUTRAL	NA	7	"CFAP61,CRNKL1,INSM1,KIZ,NAA20,RALGAPA2,RIN2"
TCGA.F4.6809	20	19979772	23462021	1290	-0.0294	NEUTRAL	NA	20	"CD93,CFAP61,CRNKL1,CST11,CSTL1,FOXA2,GZF1,INSM1,KIZ,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,RALGAPA2,RIN2,SSTR4,THBD,XRN2"
TCGA.AG.3909.01A	20	19998601	20013691	6	-0.4426	NEUTRAL	NA	1	NAA20
TCGA.AG.3909.01A	20	20016792	20025905	9	0.2096	NEUTRAL	NA	1	CRNKL1
TCGA.AG.A00C.01A	20	20024089	25038383	198	0.2955	NEUTRAL	NA	31	"ACSS1,APMAP,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,FOXA2,GGTLC1,GZF1,INSM1,KIZ,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,RALGAPA2,SSTR4,SYNDIG1,THBD,XRN2"
TCGA.AA.A00O.01A	20	20051461	29633815	253	0.0506	NEUTRAL	NA	38	"ABHD12,ACSS1,APMAP,CD93,CFAP61,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF337"
TCGA.AG.3883	20	20208849	22295050	606	0.1599	NEUTRAL	NA	8	"CFAP61,INSM1,KIZ,NKX2-2,NKX2-4,PAX1,RALGAPA2,XRN2"
TCGA.QG.A5Z1	20	20341656	22136867	496	-0.0121	NEUTRAL	NA	7	"INSM1,KIZ,NKX2-2,NKX2-4,PAX1,RALGAPA2,XRN2"
TCGA.AA.3869	20	20381301	37128816	3481	0.3181	NEUTRAL	NA	150	Too-Many
TCGA.NH.A6GA	20	20399728	62912462	13415	-0.0091	NEUTRAL	NA	386	Too-Many
TCGA.CK.5914.01A	20	20453411	20517272	13	-0.1276	NEUTRAL	NA	1	RALGAPA2
TCGA.CK.5914.01A	20	20585817	20692970	15	-0.1509	NEUTRAL	NA	1	RALGAPA2
TCGA.CM.5868	20	20613021	22511935	578	0.2111	NEUTRAL	NA	6	"KIZ,NKX2-2,NKX2-4,PAX1,RALGAPA2,XRN2"
TCGA.EI.6514	20	20647017	22918620	785	0.0233	NEUTRAL	NA	7	"FOXA2,KIZ,NKX2-2,NKX2-4,PAX1,RALGAPA2,XRN2"
TCGA.AA.3952	20	20681134	21927650	371	-0.0772	NEUTRAL	NA	6	"KIZ,NKX2-2,NKX2-4,PAX1,RALGAPA2,XRN2"
TCGA.AA.3697	20	20706991	20935093	101	0.051	NEUTRAL	NA	0	None
TCGA.DY.A1DC	20	20706991	21011162	152	0.3762	NEUTRAL	NA	0	None
TCGA.AA.3693	20	20792449	22831378	719	0.108	NEUTRAL	NA	6	"FOXA2,KIZ,NKX2-2,NKX2-4,PAX1,XRN2"
TCGA.AA.A01S	20	20817608	21302326	182	-0.01395	NEUTRAL	NA	2	"KIZ,XRN2"
TCGA.DY.A1DG	20	20900194	29586146	1826	0.3378	NEUTRAL	NA	35	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,KIZ,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF337"
TCGA.DC.6154	20	20935093	21098276	84	-0.0478	NEUTRAL	NA	0	None
TCGA.DC.6154	20	21098318	21654254	108	0.3396	NEUTRAL	NA	4	"KIZ,NKX2-2,NKX2-4,XRN2"
TCGA.G4.6298	20	21198960	44735853	6011	0.3112	NEUTRAL	NA	232	Too-Many
TCGA.AG.A015.01A	20	21213324	21319603	11	0.0345	NEUTRAL	NA	2	"KIZ,XRN2"
TCGA.AG.A01W.01A	20	21269312	23282638	28	0.0929	NEUTRAL	NA	8	"CD93,FOXA2,NKX2-2,NKX2-4,PAX1,SSTR4,THBD,XRN2"
TCGA.AA.3930.01A	20	21319603	23345804	33	-0.3031	NEUTRAL	NA	10	"CD93,FOXA2,GZF1,NKX2-2,NKX2-4,NXT1,PAX1,SSTR4,THBD,XRN2"
TCGA.AG.A015.01A	20	21321332	62904524	2654	0.3124	NEUTRAL	NA	384	Too-Many
TCGA.AA.3955	20	21336824	21962332	143	-0.3983	NEUTRAL	NA	4	"NKX2-2,NKX2-4,PAX1,XRN2"
TCGA.CK.5914.01A	20	21362576	21695069	11	0.3109	NEUTRAL	NA	4	"NKX2-2,NKX2-4,PAX1,XRN2"
TCGA.AG.4009.01A	20	21362576	23357964	24	-0.294	NEUTRAL	NA	11	"CD93,FOXA2,GZF1,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,SSTR4,THBD,XRN2"
TCGA.AG.3909.01A	20	21362576	23361803	28	-0.3157	NEUTRAL	NA	11	"CD93,FOXA2,GZF1,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,SSTR4,THBD,XRN2"
TCGA.AA.A00N.01A	20	21376497	23064896	15	-0.3241	NEUTRAL	NA	7	"CD93,FOXA2,NKX2-2,NKX2-4,PAX1,SSTR4,THBD"
TCGA.AY.A54L.01A	20	21376497	29845416	203	0.3737	NEUTRAL	NA	33	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,SSTR4,SYNDIG1,THBD,VSX1,ZNF337"
TCGA.AF.A56N	20	21451490	25705105	1611	0.3034	NEUTRAL	NA	32	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,NANP,NAPB,NINL,NKX2-2,NXT1,PAX1,PYGB,SSTR4,SYNDIG1,THBD,VSX1,ZNF337"
TCGA.AY.4070	20	21534969	23358357	730	0.0641	NEUTRAL	NA	8	"CD93,FOXA2,GZF1,NAPB,NXT1,PAX1,SSTR4,THBD"
TCGA.AG.3890	20	21574578	22295050	195	0.2338	NEUTRAL	NA	1	PAX1
TCGA.DC.6154	20	21662516	21959159	78	-0.0677	NEUTRAL	NA	1	PAX1
TCGA.AG.A014.01A	20	21695069	23064498	7	0.2773	NEUTRAL	NA	5	"CD93,FOXA2,PAX1,SSTR4,THBD"
TCGA.AA.A01S	20	21810284	23112693	536	-0.03855	NEUTRAL	NA	4	"CD93,FOXA2,SSTR4,THBD"
TCGA.A6.6654	20	21883959	26289924	1551	0.1144	NEUTRAL	NA	30	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,NANP,NAPB,NINL,NXT1,PYGB,SSTR4,SYNDIG1,THBD,VSX1,ZNF337"
TCGA.DC.6154	20	21959805	23034596	453	0.3624	NEUTRAL	NA	3	"FOXA2,SSTR4,THBD"
TCGA.AA.3941	20	22115728	22192445	22	0.1942	NEUTRAL	NA	0	None
TCGA.CM.5349	20	22148217	26289924	1486	-0.0939	NEUTRAL	NA	30	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,NANP,NAPB,NINL,NXT1,PYGB,SSTR4,SYNDIG1,THBD,VSX1,ZNF337"
TCGA.A6.5660	20	22287302	24243608	923	0.0741	NEUTRAL	NA	18	"CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,FOXA2,GGTLC1,GZF1,NAPB,NXT1,SSTR4,THBD"
TCGA.A6.2678	20	22528834	62912462	12785	0.0428	NEUTRAL	NA	380	Too-Many
TCGA.AA.A01Q.01A	20	22563266	23349352	11	-0.4207	NEUTRAL	NA	6	"CD93,FOXA2,GZF1,NXT1,SSTR4,THBD"
TCGA.D5.6533	20	22672092	23336431	340	-0.2401	NEUTRAL	NA	4	"CD93,NXT1,SSTR4,THBD"
TCGA.G4.6322	20	22680532	23282078	313	-0.3786	NEUTRAL	NA	3	"CD93,SSTR4,THBD"
TCGA.EI.6514	20	22975659	23080272	46	0.076	NEUTRAL	NA	3	"CD93,SSTR4,THBD"
TCGA.AA.A02K.01A	20	23016085	25001998	76	-0.0418	NEUTRAL	NA	21	"ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,GGTLC1,GZF1,NAPB,NXT1,SSTR4,SYNDIG1,THBD"
TCGA.AF.3914.01A	20	23064498	61464307	2642	0.2176	NEUTRAL	NA	334	Too-Many
TCGA.AA.3864	20	23206725	38647343	3037	0.1432	NEUTRAL	NA	147	Too-Many
TCGA.DC.6154	20	23245269	25425807	880	0.3173	NEUTRAL	NA	23	"ABHD12,ACSS1,APMAP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,GGTLC1,GINS1,GZF1,NAPB,NXT1,PYGB,SYNDIG1,VSX1"
TCGA.CM.6170	20	23274373	23398737	64	-0.5	NEUTRAL	NA	3	"GZF1,NAPB,NXT1"
TCGA.G4.6322	20	23294179	62912462	12423	0.1046	NEUTRAL	NA	376	Too-Many
TCGA.AG.A01W.01A	20	23305965	23424424	18	-0.3702	NEUTRAL	NA	4	"CSTL1,GZF1,NAPB,NXT1"
TCGA.AA.3930.01A	20	23347589	23476423	22	0.0425	NEUTRAL	NA	5	"CST11,CST8,CSTL1,GZF1,NAPB"
TCGA.CK.5914.01A	20	23350171	23586195	28	-0.3094	NEUTRAL	NA	7	"CST11,CST8,CST9,CST9L,CSTL1,GZF1,NAPB"
TCGA.AA.A01Q.01A	20	23350171	24949491	53	0.0967	NEUTRAL	NA	16	"APMAP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,GGTLC1,GZF1,NAPB,SYNDIG1"
TCGA.AU.3779	20	23389126	25265983	788	0.2167	NEUTRAL	NA	19	"ACSS1,APMAP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,GGTLC1,NAPB,PYGB,SYNDIG1,VSX1"
TCGA.AA.A00N.01A	20	23401893	23618270	21	0.3637	NEUTRAL	NA	7	"CST11,CST3,CST8,CST9,CST9L,CSTL1,NAPB"
TCGA.F4.6809	20	23469292	26289924	864	0.2637	NEUTRAL	NA	21	"ABHD12,ACSS1,APMAP,CST1,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,ENTPD6,GGTLC1,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1,ZNF337"
TCGA.AG.A014.01A	20	23472273	25271085	84	0.2767	NEUTRAL	NA	16	"ACSS1,APMAP,CST1,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,ENTPD6,GGTLC1,PYGB,SYNDIG1,VSX1"
TCGA.D5.6534	20	23522627	62912462	12284	0.2285	NEUTRAL	NA	370	Too-Many
TCGA.AA.3930.01A	20	23528398	24964497	42	-0.364	NEUTRAL	NA	11	"APMAP,CST1,CST2,CST3,CST4,CST5,CST7,CST9,CST9L,GGTLC1,SYNDIG1"
TCGA.AG.A01W.01A	20	23566211	25614160	132	-0.211	NEUTRAL	NA	18	"ABHD12,ACSS1,APMAP,CST1,CST2,CST3,CST4,CST5,CST7,CST9,ENTPD6,GGTLC1,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1"
TCGA.CK.5914.01A	20	23618270	23860094	13	0.2086	NEUTRAL	NA	5	"CST1,CST2,CST3,CST4,CST5"
TCGA.CM.5344	20	23678889	62912462	12230	0.3661	NEUTRAL	NA	366	Too-Many
TCGA.AA.A01S	20	23933184	26289924	672	-0.03175	NEUTRAL	NA	13	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GGTLC1,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1,ZNF337"
TCGA.AA.3660	20	24079491	41257629	3665	0.1108	NEUTRAL	NA	141	Too-Many
TCGA.AA.3982	20	24160548	24304327	62	0.3142	NEUTRAL	NA	0	None
TCGA.DM.A28A	20	24190619	25675601	492	-0.0816	NEUTRAL	NA	12	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1,ZNF337"
TCGA.AG.3742	20	24219926	26289924	517	0.3243	NEUTRAL	NA	12	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1,ZNF337"
TCGA.A6.6780	20	24515942	62912462	11828	0.0026	NEUTRAL	NA	362	Too-Many
TCGA.AA.3509.01A	20	24523697	35283134	973	0.3386	NEUTRAL	NA	105	Too-Many
TCGA.CK.6748	20	24713822	26289924	316	-0.0688	NEUTRAL	NA	11	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NANP,NINL,PYGB,VSX1,ZNF337"
TCGA.AG.3909.01A	20	24937873	24989884	13	0.2342	NEUTRAL	NA	3	"ACSS1,APMAP,CST7"
TCGA.AA.3930.01A	20	24973178	29960611	125	0.0668	NEUTRAL	NA	13	"ABHD12,ACSS1,APMAP,DEFB115,DEFB116,DEFB118,ENTPD6,GINS1,NANP,NINL,PYGB,VSX1,ZNF337"
TCGA.AA.A010.01A	20	24995729	25011365	6	0.2167	NEUTRAL	NA	1	ACSS1
TCGA.AG.4009.01A	20	25011365	25060012	7	-0.3433	NEUTRAL	NA	2	"ACSS1,VSX1"
TCGA.CK.5914.01A	20	25028671	25477289	80	0.1463	NEUTRAL	NA	7	"ABHD12,ACSS1,ENTPD6,GINS1,NINL,PYGB,VSX1"
TCGA.AA.A00N.01A	20	25028671	25755459	97	-0.332	NEUTRAL	NA	9	"ABHD12,ACSS1,ENTPD6,GINS1,NANP,NINL,PYGB,VSX1,ZNF337"
TCGA.AA.A010.01A	20	25058290	25205771	16	-0.1317	NEUTRAL	NA	2	"ENTPD6,VSX1"
TCGA.AA.3952	20	25155141	62912462	11618	0.0194	NEUTRAL	NA	357	Too-Many
TCGA.AG.A00C.01A	20	25196269	25206088	8	0.0782	NEUTRAL	NA	1	ENTPD6
TCGA.AA.A010.01A	20	25255181	25436258	40	-0.0294	NEUTRAL	NA	4	"ABHD12,GINS1,NINL,PYGB"
TCGA.AA.3862.01A	20	25270425	25303910	18	0.0289	NEUTRAL	NA	2	"ABHD12,PYGB"
TCGA.AG.A01L.01A	20	25276959	25295496	8	-0.3021	NEUTRAL	NA	2	"ABHD12,PYGB"
TCGA.AG.3909.01A	20	25297613	29633815	49	0.2813	NEUTRAL	NA	5	"ABHD12,GINS1,NANP,NINL,ZNF337"
TCGA.AG.A01L.01A	20	25297613	29633815	48	0.257	NEUTRAL	NA	5	"ABHD12,GINS1,NANP,NINL,ZNF337"
TCGA.AA.A01Q.01A	20	25297613	30804771	169	-0.0523	NEUTRAL	NA	29	"ABHD12,BCL2L1,CCM2L,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,GINS1,HCK,HM13,ID1,MYLK2,NANP,NINL,PDRG1,PLAGL2,POFUT1,REM1,TM9SF4,TPX2,TTLL9,XKR7,ZNF337"
TCGA.CM.6676	20	25329914	26289924	105	-0.3755	NEUTRAL	NA	5	"ABHD12,GINS1,NANP,NINL,ZNF337"
TCGA.AA.3862.01A	20	25394359	25666941	36	-0.1878	NEUTRAL	NA	4	"GINS1,NANP,NINL,ZNF337"
TCGA.AM.5820	20	25398789	26228268	91	0.0742	NEUTRAL	NA	4	"GINS1,NANP,NINL,ZNF337"
TCGA.AA.A00D.01A	20	25426497	29956382	37	-0.1305	NEUTRAL	NA	6	"DEFB115,DEFB116,GINS1,NANP,NINL,ZNF337"
TCGA.D5.6536	20	25451179	29586146	97	-0.0017	NEUTRAL	NA	3	"NANP,NINL,ZNF337"
TCGA.D5.6533	20	25485351	26167979	74	-0.139	NEUTRAL	NA	3	"NANP,NINL,ZNF337"
TCGA.F4.6704	20	25485351	62912462	11538	0.2853	NEUTRAL	NA	353	Too-Many
TCGA.CM.5860	20	25506581	26197930	68	0.0132	NEUTRAL	NA	3	"NANP,NINL,ZNF337"
TCGA.AA.A01K.01A	20	25655631	60868790	2228	0.3141	NEUTRAL	NA	296	Too-Many
TCGA.AA.3982	20	25705105	25737115	9	-0.4012	NEUTRAL	NA	0	None
TCGA.EI.6884	20	25716983	26289924	44	-0.3861	NEUTRAL	NA	0	None
TCGA.F4.6854	20	25738763	26072581	17	0.3599	NEUTRAL	NA	0	None
TCGA.DM.A1D4	20	25844992	25990001	15	-0.0481	NEUTRAL	NA	0	None
TCGA.AD.6965	20	25846493	29560602	41	0.0933	NEUTRAL	NA	0	None
TCGA.F5.6571	20	25849037	26072581	14	0.2846	NEUTRAL	NA	0	None
TCGA.AG.3583	20	25849067	26106444	15	0.0025	NEUTRAL	NA	0	None
TCGA.CM.6164	20	25937125	26289924	29	0.1561	NEUTRAL	NA	0	None
TCGA.F5.6811.01A	20	26136802	28247476	8	0.343	NEUTRAL	NA	0	None
TCGA.AG.3885	20	26232227	62912462	11469	0.3126	NEUTRAL	NA	350	Too-Many
TCGA.CM.6168	20	26288534	43271295	3836	0.2176	NEUTRAL	NA	147	Too-Many
TCGA.AZ.6606	20	29505892	42730973	3663	0.0513	NEUTRAL	NA	136	Too-Many
TCGA.DY.A1DF	20	29505892	51368333	6685	0.345	NEUTRAL	NA	240	Too-Many
TCGA.AA.3548	20	29505892	55577344	8634	0.2254	NEUTRAL	NA	257	Too-Many
TCGA.AY.5543	20	29505892	62912462	11375	0.3366	NEUTRAL	NA	350	Too-Many
TCGA.EI.6881	20	29505892	62912462	11457	0.366	NEUTRAL	NA	350	Too-Many
TCGA.EI.6884	20	29505892	62912462	11442	0.219	NEUTRAL	NA	350	Too-Many
TCGA.NH.A50V	20	29529914	62912462	11402	0.367	NEUTRAL	NA	350	Too-Many
TCGA.F4.6806	20	29540628	62912462	11401	0.1853	NEUTRAL	NA	350	Too-Many
TCGA.AG.4009.01A	20	29623125	29633815	7	0.0272	NEUTRAL	NA	0	None
TCGA.CK.4948.01B	20	29623125	29633815	7	0.0158	NEUTRAL	NA	0	None
TCGA.A6.3808.01A	20	29633815	30825543	151	0.3557	NEUTRAL	NA	24	"BCL2L1,CCM2L,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HCK,HM13,ID1,MYLK2,PDRG1,PLAGL2,POFUT1,REM1,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.AA.3861.01A	20	29633815	34060451	645	-0.049	NEUTRAL	NA	73	"ACSS2,ACTL10,AHCY,ASIP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CEP250,CHMP4B,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,DYNLRB1,E2F1,EDEM2,EIF2S2,EIF6,FAM83C,FOXS1,GDF5,GGT7,GSS,HCK,HM13,ID1,ITCH,KIF3B,MAP1LC3A,MAPRE1,MMP24,MYH7B,MYLK2,NCOA6,NECAB3,NOL4L,PDRG1,PIGU,PLAGL2,POFUT1,PROCR,PXMP4,RALY,REM1,SNTA1,SUN5,TM9SF4,TP53INP2,TPX2,TRPC4AP,TTLL9,UQCC1,XKR7,ZNF341"
TCGA.AA.3862.01A	20	29633815	60581539	2532	0.2301	NEUTRAL	NA	289	Too-Many
TCGA.DM.A1D7	20	29850585	37775430	1671	0.2822	NEUTRAL	NA	120	Too-Many
TCGA.F4.6463	20	29874663	62912462	11447	0.2609	NEUTRAL	NA	349	Too-Many
TCGA.AF.6136	20	29881041	62912462	11440	0.3545	NEUTRAL	NA	349	Too-Many
TCGA.AG.A01W.01A	20	29938582	30481334	85	0.3555	NEUTRAL	NA	15	"BCL2L1,COX4I2,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HM13,ID1,MYLK2,REM1,TPX2,TTLL9"
TCGA.AA.3930.01A	20	29965011	33575310	559	0.3385	NEUTRAL	NA	61	"ACSS2,ACTL10,AHCY,ASIP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CHMP4B,COMMD7,COX4I2,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,DYNLRB1,E2F1,EIF2S2,FOXS1,GGT7,GSS,HCK,HM13,ID1,ITCH,KIF3B,MAP1LC3A,MAPRE1,MYH7B,MYLK2,NCOA6,NECAB3,NOL4L,PDRG1,PIGU,PLAGL2,POFUT1,PXMP4,RALY,REM1,SNTA1,SUN5,TM9SF4,TP53INP2,TPX2,TTLL9,XKR7,ZNF341"
TCGA.AG.4009.01A	20	30028434	30064218	5	0.1395	NEUTRAL	NA	3	"DEFB123,DEFB124,REM1"
TCGA.AA.A00N.01A	20	30071945	30421459	45	-0.0913	NEUTRAL	NA	7	"BCL2L1,COX4I2,HM13,ID1,MYLK2,REM1,TPX2"
TCGA.AA.A010.01A	20	30071945	30526896	71	0.2811	NEUTRAL	NA	10	"BCL2L1,COX4I2,DUSP15,FOXS1,HM13,ID1,MYLK2,REM1,TPX2,TTLL9"
TCGA.AG.3909.01A	20	30155870	30193169	3	-0.053	NEUTRAL	NA	2	"HM13,ID1"
TCGA.AG.3909.01A	20	30418579	30474933	17	0.0112	NEUTRAL	NA	4	"DUSP15,FOXS1,MYLK2,TTLL9"
TCGA.AG.3906.01A	20	30486223	30533565	13	0.2035	NEUTRAL	NA	2	"PDRG1,TTLL9"
TCGA.AG.3909.01A	20	30533565	30617456	11	0.2455	NEUTRAL	NA	3	"CCM2L,PDRG1,XKR7"
TCGA.AA.A00N.01A	20	30539625	30618796	13	-0.3761	NEUTRAL	NA	3	"CCM2L,PDRG1,XKR7"
TCGA.AD.6965	20	30608045	33026002	533	0.2983	NEUTRAL	NA	36	"ACTL10,AHCY,ASIP,ASXL1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CHMP4B,COMMD7,DNMT3B,E2F1,EIF2S2,HCK,ITCH,KIF3B,MAPRE1,NECAB3,NOL4L,PLAGL2,POFUT1,PXMP4,RALY,SNTA1,SUN5,TM9SF4,ZNF341"
TCGA.AG.3909.01A	20	30753056	30804771	7	0.0937	NEUTRAL	NA	3	"PLAGL2,POFUT1,TM9SF4"
TCGA.AG.A01W.01A	20	30754807	30757989	5	-0.4148	NEUTRAL	NA	1	TM9SF4
TCGA.AG.4009.01A	20	30784203	30804771	6	0.3386	NEUTRAL	NA	2	"PLAGL2,POFUT1"
TCGA.AA.A01Q.01A	20	30954172	31424389	43	-0.1855	NEUTRAL	NA	6	"ASXL1,C20orf203,COMMD7,DNMT3B,MAPRE1,NOL4L"
TCGA.AA.A010.01A	20	31015889	31043889	14	0.1121	NEUTRAL	NA	2	"ASXL1,NOL4L"
TCGA.AG.3906.01A	20	31015889	31062367	15	0.1092	NEUTRAL	NA	2	"ASXL1,NOL4L"
TCGA.AG.3909.01A	20	31015889	31062367	15	-0.2864	NEUTRAL	NA	2	"ASXL1,NOL4L"
TCGA.AA.A01D.01A	20	31019075	41400035	933	0.2002	NEUTRAL	NA	104	Too-Many
TCGA.AG.A01W.01A	20	31072683	31111320	21	0.0078	NEUTRAL	NA	1	NOL4L
TCGA.AA.A00N.01A	20	31099103	31451515	43	0.0423	NEUTRAL	NA	5	"C20orf203,COMMD7,DNMT3B,MAPRE1,NOL4L"
TCGA.AG.A01W.01A	20	31118217	31138193	14	0.0274	NEUTRAL	NA	1	NOL4L
TCGA.AG.A01W.01A	20	31143885	31343318	42	0.1271	NEUTRAL	NA	3	"C20orf203,COMMD7,NOL4L"
TCGA.AA.A010.01A	20	31315682	31451515	30	-0.3243	NEUTRAL	NA	3	"COMMD7,DNMT3B,MAPRE1"
TCGA.AG.A01W.01A	20	31358320	31709234	32	0.1986	NEUTRAL	NA	7	"BPIFB2,BPIFB3,BPIFB4,BPIFB6,DNMT3B,MAPRE1,SUN5"
TCGA.AA.A00J.01A	20	31393089	62904524	2309	0.1214	NEUTRAL	NA	321	Too-Many
TCGA.AG.A00C.01A	20	31427489	31685406	68	0.1666	NEUTRAL	NA	6	"BPIFB2,BPIFB3,BPIFB4,BPIFB6,MAPRE1,SUN5"
TCGA.AG.3906.01A	20	31434377	31894669	104	0.2773	NEUTRAL	NA	10	"BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,MAPRE1,SUN5"
TCGA.AA.A01Q.01A	20	31571568	31619411	27	-0.4763	NEUTRAL	NA	2	"BPIFB2,SUN5"
TCGA.AA.A00N.01A	20	31577368	31587680	5	-0.4133	NEUTRAL	NA	1	SUN5
TCGA.AA.A010.01A	20	31577368	31592012	8	0.0867	NEUTRAL	NA	1	SUN5
TCGA.AA.A010.01A	20	31620753	31631044	12	0.26	NEUTRAL	NA	1	BPIFB6
TCGA.AA.A01Q.01A	20	31620753	31756901	44	-0.1535	NEUTRAL	NA	4	"BPIFA2,BPIFB3,BPIFB4,BPIFB6"
TCGA.AA.3842	20	31630723	31635552	3	-0.4098	NEUTRAL	NA	1	BPIFB6
TCGA.DM.A1DA	20	31634427	31654092	12	-0.0346	NEUTRAL	NA	1	BPIFB3
TCGA.AA.A00N.01A	20	31682831	31768258	14	-0.2041	NEUTRAL	NA	2	"BPIFA2,BPIFB4"
TCGA.AA.A010.01A	20	31690702	31830277	25	0.0956	NEUTRAL	NA	4	"BPIFA1,BPIFA2,BPIFA3,BPIFB4"
TCGA.AG.A01W.01A	20	31731173	31832706	16	0.2136	NEUTRAL	NA	3	"BPIFA1,BPIFA2,BPIFA3"
TCGA.AG.4009.01A	20	31756901	31768258	7	0.1818	NEUTRAL	NA	1	BPIFA2
TCGA.AA.A01Q.01A	20	31805306	31876500	15	0.3557	NEUTRAL	NA	3	"BPIFA1,BPIFA3,BPIFB1"
TCGA.AG.A00C.01A	20	31805306	31885266	20	0.0312	NEUTRAL	NA	3	"BPIFA1,BPIFA3,BPIFB1"
TCGA.EI.6514	20	31811127	31817603	5	-0.0353	NEUTRAL	NA	1	BPIFA3
TCGA.AA.A01Q.01A	20	31877639	31984518	26	-0.3367	NEUTRAL	NA	2	"BPIFB1,CDK5RAP1"
TCGA.AA.A00N.01A	20	31897457	31961869	7	0.0148	NEUTRAL	NA	2	"BPIFB1,CDK5RAP1"
TCGA.AA.A010.01A	20	31946798	32232126	32	-0.0163	NEUTRAL	NA	3	"CBFA2T2,CDK5RAP1,SNTA1"
TCGA.A6.3808.01A	20	31946798	35772078	576	-0.1019	NEUTRAL	NA	59	"AAR2,ACSS2,ACTL10,AHCY,ASIP,C20orf144,C20orf173,C20orf24,CBFA2T2,CDK5RAP1,CEP250,CHMP4B,CNBD2,CPNE1,DLGAP4,DSN1,DYNLRB1,E2F1,EDEM2,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,GGT7,GSS,ITCH,MAP1LC3A,MMP24,MROH8,MYH7B,MYL9,NCOA6,NDRG3,NECAB3,NFS1,PHF20,PIGU,PROCR,PXMP4,RALY,RBL1,RBM12,RBM39,ROMO1,SAMHD1,SCAND1,SLA2,SNTA1,SOGA1,SPAG4,TGIF2,TGIF2-C20orf24,TLDC2,TP53INP2,TRPC4AP,UQCC1,ZNF341"
TCGA.AG.3909.01A	20	31960395	31984518	9	-0.0162	NEUTRAL	NA	1	CDK5RAP1
TCGA.AG.4009.01A	20	31961869	32161948	14	0.0379	NEUTRAL	NA	3	"CBFA2T2,CDK5RAP1,SNTA1"
TCGA.AA.A00N.01A	20	31996258	32248013	24	0.3025	NEUTRAL	NA	3	"CBFA2T2,NECAB3,SNTA1"
TCGA.AG.A01W.01A	20	32141926	33039540	166	0.2793	NEUTRAL	NA	13	"ACTL10,AHCY,ASIP,C20orf144,CBFA2T2,CHMP4B,E2F1,EIF2S2,ITCH,NECAB3,PXMP4,RALY,ZNF341"
TCGA.AG.3909.01A	20	32224384	32298321	17	0.1991	NEUTRAL	NA	6	"ACTL10,C20orf144,CBFA2T2,E2F1,NECAB3,PXMP4"
TCGA.AA.A01Q.01A	20	32250102	32268076	9	-0.4239	NEUTRAL	NA	4	"ACTL10,C20orf144,E2F1,NECAB3"
TCGA.AA.A01Q.01A	20	32295464	33122380	77	0.0974	NEUTRAL	NA	9	"AHCY,ASIP,CHMP4B,DYNLRB1,EIF2S2,ITCH,PXMP4,RALY,ZNF341"
TCGA.AG.A016.01A	20	32298321	32307860	3	0.0411	NEUTRAL	NA	1	PXMP4
TCGA.AA.A00N.01A	20	32307860	32436226	18	0.3703	NEUTRAL	NA	3	"CHMP4B,PXMP4,ZNF341"
TCGA.AA.A010.01A	20	32340938	33037149	52	0.3747	NEUTRAL	NA	7	"AHCY,ASIP,CHMP4B,EIF2S2,ITCH,RALY,ZNF341"
TCGA.AG.3909.01A	20	32376619	32881848	31	0.19	NEUTRAL	NA	6	"AHCY,ASIP,CHMP4B,EIF2S2,RALY,ZNF341"
TCGA.AM.5820	20	32540597	32842356	41	0.1913	NEUTRAL	NA	2	"EIF2S2,RALY"
TCGA.AA.A00N.01A	20	32856749	33045156	20	0.1296	NEUTRAL	NA	3	"AHCY,ASIP,ITCH"
TCGA.AM.5820	20	32890417	33478380	72	0.1858	NEUTRAL	NA	9	"ACSS2,AHCY,DYNLRB1,GGT7,ITCH,MAP1LC3A,NCOA6,PIGU,TP53INP2"
TCGA.AG.3909.01A	20	33057791	33095463	11	-0.2925	NEUTRAL	NA	1	ITCH
TCGA.AG.A01W.01A	20	33095931	33298019	30	0.2412	NEUTRAL	NA	5	"DYNLRB1,ITCH,MAP1LC3A,PIGU,TP53INP2"
TCGA.AA.A00N.01A	20	33104186	33324432	28	-0.3306	NEUTRAL	NA	5	"DYNLRB1,MAP1LC3A,NCOA6,PIGU,TP53INP2"
TCGA.AA.A010.01A	20	33122380	33334562	26	-0.4881	NEUTRAL	NA	5	"DYNLRB1,MAP1LC3A,NCOA6,PIGU,TP53INP2"
TCGA.AA.A01Q.01A	20	33128360	33162867	6	-0.3801	NEUTRAL	NA	3	"DYNLRB1,MAP1LC3A,PIGU"
TCGA.AD.6965	20	33194256	42424337	2844	0.3123	NEUTRAL	NA	78	"AAR2,ACSS2,ACTR5,ADIG,ARHGAP40,BLCAP,BPI,C20orf173,C20orf24,CEP250,CHD6,CNBD2,CPNE1,CTNNBL1,DHX35,DLGAP4,DSN1,EDEM2,EIF6,EMILIN3,EPB41L1,ERGIC3,FAM83C,FAM83D,GDF5,GGT7,GHRH,GSS,GTSF1L,IFT52,KIAA1755,L3MBTL1,LBP,LPIN3,MAFB,MANBAL,MMP24,MROH8,MYBL2,MYH7B,MYL9,NCOA6,NDRG3,NFS1,NNAT,PHF20,PIGU,PLCG1,PPP1R16B,PROCR,PTPRT,RALGAPB,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SGK2,SLA2,SLC32A1,SOGA1,SPAG4,SRC,SRSF6,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TOP1,TP53INP2,TRPC4AP,TTI1,UQCC1,VSTM2L,ZHX3"
TCGA.AG.3909.01A	20	33244915	33303051	5	0.081	NEUTRAL	NA	3	"NCOA6,PIGU,TP53INP2"
TCGA.DM.A285	20	33279944	34676909	266	0.3068	NEUTRAL	NA	26	"ACSS2,C20orf173,CEP250,CNBD2,CPNE1,EDEM2,EIF6,ERGIC3,FAM83C,GDF5,GGT7,GSS,MMP24,MYH7B,NCOA6,NFS1,PHF20,PROCR,RBM12,RBM39,ROMO1,SCAND1,SPAG4,TP53INP2,TRPC4AP,UQCC1"
TCGA.AA.A00Z.01A	20	33328138	58519950	30	-0.3097	NEUTRAL	NA	226	Too-Many
TCGA.AG.A01W.01A	20	33335342	33530837	35	0.3335	NEUTRAL	NA	4	"ACSS2,GGT7,GSS,NCOA6"
TCGA.AA.A00N.01A	20	33433131	33502939	22	-0.3755	NEUTRAL	NA	2	"ACSS2,GGT7"
TCGA.AG.3909.01A	20	33442557	33470550	10	-0.1558	NEUTRAL	NA	2	"ACSS2,GGT7"
TCGA.AA.A024.01A	20	33444553	60589556	1868	0.014	NEUTRAL	NA	229	Too-Many
TCGA.AA.A01Q.01A	20	33460408	33603759	47	0.0706	NEUTRAL	NA	5	"ACSS2,GGT7,GSS,MYH7B,TRPC4AP"
TCGA.AG.A01W.01A	20	33531187	33549821	8	-0.3925	NEUTRAL	NA	2	"GSS,MYH7B"
TCGA.AG.A01W.01A	20	33551244	33606159	17	0.2541	NEUTRAL	NA	2	"MYH7B,TRPC4AP"
TCGA.AA.A00N.01A	20	33563284	33592212	28	-0.2842	NEUTRAL	NA	2	"MYH7B,TRPC4AP"
TCGA.AG.3909.01A	20	33568344	33596409	26	0.2487	NEUTRAL	NA	2	"MYH7B,TRPC4AP"
TCGA.AA.3930.01A	20	33575845	33593467	17	-0.0909	NEUTRAL	NA	2	"MYH7B,TRPC4AP"
TCGA.CI.6620	20	33576204	62912462	10705	0.3155	NEUTRAL	NA	287	Too-Many
TCGA.AA.A010.01A	20	33608941	33714002	12	-0.0048	NEUTRAL	NA	2	"EDEM2,TRPC4AP"
TCGA.AM.5820	20	33621016	33703443	16	0.1969	NEUTRAL	NA	2	"EDEM2,TRPC4AP"
TCGA.G4.6315	20	33653835	34171323	111	0.3348	NEUTRAL	NA	11	"C20orf173,CEP250,EDEM2,EIF6,ERGIC3,FAM83C,GDF5,MMP24,PROCR,TRPC4AP,UQCC1"
TCGA.AM.5820	20	33713638	33835772	32	0.1651	NEUTRAL	NA	3	"EDEM2,MMP24,PROCR"
TCGA.AG.A01W.01A	20	33724040	33733174	6	-0.0157	NEUTRAL	NA	1	EDEM2
TCGA.AG.3909.01A	20	33759905	33879587	22	-0.0102	NEUTRAL	NA	4	"EIF6,FAM83C,MMP24,PROCR"
TCGA.AG.A01W.01A	20	33790231	39412088	456	0.3403	NEUTRAL	NA	55	"AAR2,ACTR5,ADIG,ARHGAP40,BLCAP,BPI,C20orf173,C20orf24,CEP250,CNBD2,CPNE1,CTNNBL1,DHX35,DLGAP4,DSN1,EIF6,EPB41L1,ERGIC3,FAM83C,FAM83D,GDF5,GHRH,KIAA1755,LBP,MAFB,MANBAL,MMP24,MROH8,MYL9,NDRG3,NFS1,NNAT,PHF20,PPP1R16B,RALGAPB,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SLC32A1,SOGA1,SPAG4,SRC,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TTI1,UQCC1,VSTM2L"
TCGA.AA.A010.01A	20	33851552	33954290	20	0.1224	NEUTRAL	NA	4	"EIF6,FAM83C,MMP24,UQCC1"
TCGA.AG.4009.01A	20	33854961	33879587	14	7.00E-04	NEUTRAL	NA	3	"EIF6,FAM83C,MMP24"
TCGA.AA.A01Q.01A	20	33891691	34582913	129	0.178	NEUTRAL	NA	14	"C20orf173,CEP250,CNBD2,CPNE1,ERGIC3,GDF5,NFS1,PHF20,RBM12,RBM39,ROMO1,SCAND1,SPAG4,UQCC1"
TCGA.AG.3909.01A	20	34021679	34041730	4	0.0542	NEUTRAL	NA	1	GDF5
TCGA.AA.A00N.01A	20	34021679	34060451	13	-0.3405	NEUTRAL	NA	2	"CEP250,GDF5"
TCGA.AG.3906.01A	20	34096745	34389390	62	0.1759	NEUTRAL	NA	10	"C20orf173,CEP250,CPNE1,ERGIC3,NFS1,PHF20,RBM12,RBM39,ROMO1,SPAG4"
TCGA.AG.A016.01A	20	34116563	34136842	6	0.2556	NEUTRAL	NA	2	"C20orf173,ERGIC3"
TCGA.AG.3909.01A	20	34116563	34312911	52	0.0973	NEUTRAL	NA	8	"C20orf173,CPNE1,ERGIC3,NFS1,RBM12,RBM39,ROMO1,SPAG4"
TCGA.AA.3861.01A	20	34129799	60498481	1836	-0.1144	NEUTRAL	NA	214	Too-Many
TCGA.AA.3930.01A	20	34205377	34214436	10	-0.2263	NEUTRAL	NA	2	"CPNE1,SPAG4"
TCGA.AA.A010.01A	20	34205930	34246797	17	0.2217	NEUTRAL	NA	3	"CPNE1,RBM12,SPAG4"
TCGA.AM.5820	20	34211292	34662886	78	0.1648	NEUTRAL	NA	8	"CNBD2,CPNE1,NFS1,PHF20,RBM12,RBM39,ROMO1,SCAND1"
TCGA.AA.A010.01A	20	34292356	34327302	17	-0.107	NEUTRAL	NA	1	RBM39
TCGA.AA.A00N.01A	20	34302077	34324394	10	-0.2765	NEUTRAL	NA	1	RBM39
TCGA.F4.6805	20	34539326	62912462	10508	0.3276	NEUTRAL	NA	268	Too-Many
TCGA.AA.A00N.01A	20	34541676	34618250	13	-0.2803	NEUTRAL	NA	2	"CNBD2,SCAND1"
TCGA.AA.A010.01A	20	34563801	35350021	79	0.139	NEUTRAL	NA	10	"AAR2,C20orf24,CNBD2,DLGAP4,EPB41L1,MYL9,NDRG3,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.AA.A01Q.01A	20	34596181	35399748	81	-0.2116	NEUTRAL	NA	11	"AAR2,C20orf24,CNBD2,DLGAP4,DSN1,EPB41L1,MYL9,NDRG3,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.AG.3909.01A	20	35060081	35242657	24	0.1924	NEUTRAL	NA	6	"C20orf24,DLGAP4,MYL9,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.DM.A285	20	35097118	35998624	122	0.2793	NEUTRAL	NA	17	"C20orf24,DLGAP4,DSN1,GHRH,MANBAL,MROH8,MYL9,NDRG3,RBL1,RPN2,SAMHD1,SLA2,SOGA1,SRC,TGIF2,TGIF2-C20orf24,TLDC2"
TCGA.AM.5820	20	35181644	35385310	19	0.2427	NEUTRAL	NA	6	"C20orf24,DSN1,NDRG3,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.A6.5660	20	35276584	36864540	361	0.0598	NEUTRAL	NA	19	"BLCAP,CTNNBL1,DSN1,GHRH,KIAA1755,MANBAL,MROH8,NDRG3,NNAT,RBL1,RPN2,RPRD1B,SAMHD1,SOGA1,SRC,TGM2,TLDC2,TTI1,VSTM2L"
TCGA.AA.3509.01A	20	35284707	35414836	25	-0.2123	NEUTRAL	NA	3	"DSN1,NDRG3,SOGA1"
TCGA.AG.3909.01A	20	35288666	35386900	17	0.3669	NEUTRAL	NA	2	"DSN1,NDRG3"
TCGA.AA.A00N.01A	20	35406104	35563404	35	0.0998	NEUTRAL	NA	3	"SAMHD1,SOGA1,TLDC2"
TCGA.AA.A01Q.01A	20	35421660	36012528	71	0.155	NEUTRAL	NA	9	"GHRH,MANBAL,MROH8,RBL1,RPN2,SAMHD1,SOGA1,SRC,TLDC2"
TCGA.AA.3509.01A	20	35515808	35772078	52	-0.1436	NEUTRAL	NA	4	"MROH8,RBL1,SAMHD1,TLDC2"
TCGA.AM.5820	20	35519945	35800742	30	0.1662	NEUTRAL	NA	4	"MROH8,RBL1,SAMHD1,TLDC2"
TCGA.AA.A010.01A	20	35532520	35579798	12	0.2667	NEUTRAL	NA	1	SAMHD1
TCGA.AG.3909.01A	20	35569382	35812546	47	0.2347	NEUTRAL	NA	4	"MROH8,RBL1,RPN2,SAMHD1"
TCGA.AG.4009.01A	20	35748063	35786224	11	-0.1966	NEUTRAL	NA	1	MROH8
TCGA.AA.3509.01A	20	35776137	58422077	1545	0.3679	NEUTRAL	NA	184	Too-Many
TCGA.AG.3906.01A	20	35786224	39977247	251	0.34	NEUTRAL	NA	28	"ACTR5,ADIG,ARHGAP40,BLCAP,BPI,CTNNBL1,DHX35,FAM83D,GHRH,KIAA1755,LBP,LPIN3,MAFB,MANBAL,MROH8,NNAT,PLCG1,PPP1R16B,RALGAPB,RPN2,RPRD1B,SLC32A1,SRC,TGM2,TOP1,TTI1,VSTM2L,ZHX3"
TCGA.AG.3891.01A	20	35786224	42223287	360	0.3669	NEUTRAL	NA	35	"ACTR5,ADIG,ARHGAP40,BLCAP,BPI,CHD6,CTNNBL1,DHX35,EMILIN3,FAM83D,GHRH,IFT52,KIAA1755,L3MBTL1,LBP,LPIN3,MAFB,MANBAL,MROH8,NNAT,PLCG1,PPP1R16B,PTPRT,RALGAPB,RPN2,RPRD1B,SGK2,SLC32A1,SRC,SRSF6,TGM2,TOP1,TTI1,VSTM2L,ZHX3"
TCGA.AG.A00C.01A	20	35832239	35929629	19	0.2037	NEUTRAL	NA	3	"GHRH,MANBAL,RPN2"
TCGA.AA.A00N.01A	20	35930596	36151016	17	-0.3819	NEUTRAL	NA	4	"BLCAP,MANBAL,NNAT,SRC"
TCGA.AA.A010.01A	20	35944661	36030801	11	-0.4421	NEUTRAL	NA	2	"MANBAL,SRC"
TCGA.AG.3909.01A	20	36012528	36150730	13	0.246	NEUTRAL	NA	3	"BLCAP,NNAT,SRC"
TCGA.AG.4009.01A	20	36014431	36031532	10	0.1496	NEUTRAL	NA	1	SRC
TCGA.AA.A01Q.01A	20	36147322	36948544	73	0.0321	NEUTRAL	NA	9	"BLCAP,BPI,CTNNBL1,KIAA1755,NNAT,RPRD1B,TGM2,TTI1,VSTM2L"
TCGA.AG.A00C.01A	20	36322443	36500273	15	0.2383	NEUTRAL	NA	1	CTNNBL1
TCGA.AA.A010.01A	20	36361241	36488254	13	-0.299	NEUTRAL	NA	1	CTNNBL1
TCGA.AA.A00N.01A	20	36488254	36687749	20	0.063	NEUTRAL	NA	4	"CTNNBL1,RPRD1B,TTI1,VSTM2L"
TCGA.AG.3727	20	36502339	37018832	178	0.0813	NEUTRAL	NA	7	"BPI,KIAA1755,LBP,RPRD1B,TGM2,TTI1,VSTM2L"
TCGA.AA.3679	20	36547196	39036670	864	0.3187	NEUTRAL	NA	15	"ACTR5,ADIG,ARHGAP40,BPI,DHX35,FAM83D,KIAA1755,LBP,PPP1R16B,RALGAPB,RPRD1B,SLC32A1,TGM2,TTI1,VSTM2L"
TCGA.AG.3909.01A	20	36561886	36668820	12	-0.1986	NEUTRAL	NA	3	"RPRD1B,TTI1,VSTM2L"
TCGA.AG.A00C.01A	20	36685902	36992578	52	0.1861	NEUTRAL	NA	5	"BPI,KIAA1755,LBP,RPRD1B,TGM2"
TCGA.AA.A010.01A	20	36854030	36983681	32	0.3496	NEUTRAL	NA	3	"BPI,KIAA1755,LBP"
TCGA.AG.4009.01A	20	36977909	36999317	10	0.2821	NEUTRAL	NA	1	LBP
TCGA.AA.A01Q.01A	20	36997592	39792308	109	0.0818	NEUTRAL	NA	12	"ACTR5,ADIG,ARHGAP40,DHX35,FAM83D,LBP,MAFB,PLCG1,PPP1R16B,RALGAPB,SLC32A1,TOP1"
TCGA.AG.4009.01A	20	36999864	37005198	4	-0.2104	NEUTRAL	NA	1	LBP
TCGA.AG.3909.01A	20	36999864	37150088	12	-0.1226	NEUTRAL	NA	2	"LBP,RALGAPB"
TCGA.AA.3815.01A	20	37002522	62904524	1846	0.0088	NEUTRAL	NA	238	Too-Many
TCGA.AG.4009.01A	20	37117038	37150088	8	0.1588	NEUTRAL	NA	1	RALGAPB
TCGA.AA.3930.01A	20	37125968	60508006	1468	0.2637	NEUTRAL	NA	175	Too-Many
TCGA.AA.3982	20	37144695	37186008	7	0.0324	NEUTRAL	NA	1	RALGAPB
TCGA.AA.A010.01A	20	37153999	37203368	19	0.1099	NEUTRAL	NA	1	RALGAPB
TCGA.AA.A00N.01A	20	37159751	37377082	39	0.1924	NEUTRAL	NA	4	"ADIG,ARHGAP40,RALGAPB,SLC32A1"
TCGA.AA.3681	20	37198857	37253949	18	-0.4381	NEUTRAL	NA	3	"ADIG,ARHGAP40,RALGAPB"
TCGA.AA.3681	20	37253987	37798406	147	0.3515	NEUTRAL	NA	6	"ACTR5,ARHGAP40,DHX35,FAM83D,PPP1R16B,SLC32A1"
TCGA.AG.4009.01A	20	37258103	37383553	6	-0.0058	NEUTRAL	NA	3	"ACTR5,ARHGAP40,SLC32A1"
TCGA.AA.A010.01A	20	37400150	39721062	46	0.3632	NEUTRAL	NA	6	"ACTR5,DHX35,FAM83D,MAFB,PPP1R16B,TOP1"
TCGA.AA.A00N.01A	20	37400150	39788209	61	0.1272	NEUTRAL	NA	7	"ACTR5,DHX35,FAM83D,MAFB,PLCG1,PPP1R16B,TOP1"
TCGA.AG.A00C.01A	20	37400150	41514415	157	0.2539	NEUTRAL	NA	12	"ACTR5,CHD6,DHX35,EMILIN3,FAM83D,LPIN3,MAFB,PLCG1,PPP1R16B,PTPRT,TOP1,ZHX3"
TCGA.AA.3844	20	37748569	41285977	1411	0.3122	NEUTRAL	NA	8	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,PTPRT,TOP1,ZHX3"
TCGA.D5.6922	20	37759894	38078113	115	0.0192	NEUTRAL	NA	0	None
TCGA.DM.A1D7	20	37785437	38004650	76	-0.4341	NEUTRAL	NA	0	None
TCGA.AA.3850	20	37796610	38256687	186	-0.13025	NEUTRAL	NA	0	None
TCGA.AA.3681	20	37800262	45181295	2781	-0.4814	NEUTRAL	NA	82	"ACOT8,ADA,C20orf62,CD40,CDH22,CHD6,CTSA,DBNDD2,DNTTIP1,ELMO2,EMILIN3,EPPIN,EPPIN-WFDC6,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,LPIN3,MAFB,MATN4,MMP9,MYBL2,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLCG1,PLTP,PTPRT,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SRSF6,STK4,SYS1,TNNC2,TOMM34,TOP1,TOX2,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZHX3,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AM.5820	20	37949374	38169497	90	0.0165	NEUTRAL	NA	0	None
TCGA.DM.A1D7	20	38012109	40398136	842	0.2598	NEUTRAL	NA	7	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,TOP1,ZHX3"
TCGA.AA.3664	20	38201674	38236505	16	0.1743	NEUTRAL	NA	0	None
TCGA.AA.3850	20	38259542	38312468	53	-0.01655	NEUTRAL	NA	0	None
TCGA.G4.6299	20	38300924	41550493	1342	0.2881	NEUTRAL	NA	8	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,PTPRT,TOP1,ZHX3"
TCGA.AA.3941	20	38311368	38342556	13	-0.0546	NEUTRAL	NA	0	None
TCGA.AA.3941	20	38626990	38691928	38	-0.2641	NEUTRAL	NA	0	None
TCGA.AA.3864	20	38651885	38988772	120	-0.1323	NEUTRAL	NA	0	None
TCGA.AA.3850	20	38849582	41745490	1195	-0.00375	NEUTRAL	NA	8	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,PTPRT,TOP1,ZHX3"
TCGA.AA.3864	20	38989026	51356519	4487	0.1369	NEUTRAL	NA	119	Too-Many
TCGA.AG.4009.01A	20	39316477	39657986	3	0.193	NEUTRAL	NA	2	"MAFB,TOP1"
TCGA.AG.A01W.01A	20	39482531	39499259	5	0.2426	NEUTRAL	NA	0	None
TCGA.DY.A1DG	20	39536138	42240729	1084	0.3305	NEUTRAL	NA	11	"CHD6,EMILIN3,IFT52,L3MBTL1,LPIN3,PLCG1,PTPRT,SGK2,SRSF6,TOP1,ZHX3"
TCGA.AG.3611.01A	20	39721062	42697241	153	0.2514	NEUTRAL	NA	14	"CHD6,EMILIN3,GTSF1L,IFT52,L3MBTL1,LPIN3,MYBL2,PLCG1,PTPRT,SGK2,SRSF6,TOP1,TOX2,ZHX3"
TCGA.AA.A010.01A	20	39766243	39793888	7	0.0292	NEUTRAL	NA	1	PLCG1
TCGA.AA.A02K.01A	20	39766244	39813741	15	0.0087	NEUTRAL	NA	2	"PLCG1,ZHX3"
TCGA.AA.A01Q.01A	20	39800784	39977686	10	-5.00E-04	NEUTRAL	NA	3	"LPIN3,PLCG1,ZHX3"
TCGA.AA.A00N.01A	20	39974397	39993623	17	-0.1457	NEUTRAL	NA	2	"EMILIN3,LPIN3"
TCGA.AA.A01Q.01A	20	40033195	42086667	43	0.2303	NEUTRAL	NA	3	"CHD6,PTPRT,SRSF6"
TCGA.AG.3906.01A	20	40033195	42204817	95	0.3218	NEUTRAL	NA	5	"CHD6,L3MBTL1,PTPRT,SGK2,SRSF6"
TCGA.AA.A010.01A	20	40045787	40143404	27	-0.0315	NEUTRAL	NA	1	CHD6
TCGA.AA.A00L.01A	20	40141447	42086667	14	0.2542	NEUTRAL	NA	3	"CHD6,PTPRT,SRSF6"
TCGA.AA.3941	20	40478756	40512409	21	0.2006	NEUTRAL	NA	0	None
TCGA.AA.3941	20	40604576	40672958	40	0.3546	NEUTRAL	NA	0	None
TCGA.AA.3941	20	40801482	40816801	18	-0.145	NEUTRAL	NA	1	PTPRT
TCGA.AA.3679	20	41022014	41517390	307	0.2707	NEUTRAL	NA	1	PTPRT
TCGA.G4.6311	20	41241887	41290935	31	0.323	NEUTRAL	NA	1	PTPRT
TCGA.AA.3844	20	41290935	41436908	110	0.3478	NEUTRAL	NA	1	PTPRT
TCGA.AA.3844	20	41454326	41514540	36	0.3517	NEUTRAL	NA	1	PTPRT
TCGA.T9.A92H	20	41517369	41581087	19	0.1606	NEUTRAL	NA	1	PTPRT
TCGA.AA.3844	20	41523039	41594360	20	0.0378	NEUTRAL	NA	1	PTPRT
TCGA.T9.A92H	20	41674449	41707000	10	0.1329	NEUTRAL	NA	1	PTPRT
TCGA.AA.3844	20	41740742	41745490	10	-0.1106	NEUTRAL	NA	1	PTPRT
TCGA.AA.3850	20	41746709	42730973	349	0.37125	NEUTRAL	NA	8	"GTSF1L,IFT52,L3MBTL1,MYBL2,PTPRT,SGK2,SRSF6,TOX2"
TCGA.CK.5914.01A	20	42088361	42089096	3	0.0569	NEUTRAL	NA	1	SRSF6
TCGA.AG.3909.01A	20	42088361	42144674	6	0.0724	NEUTRAL	NA	2	"L3MBTL1,SRSF6"
TCGA.AA.A01Q.01A	20	42088361	42835473	74	-0.1305	NEUTRAL	NA	9	"GTSF1L,IFT52,JPH2,L3MBTL1,MYBL2,OSER1,SGK2,SRSF6,TOX2"
TCGA.CK.5914.01A	20	42208560	42242442	8	0.1736	NEUTRAL	NA	2	"IFT52,SGK2"
TCGA.AA.A010.01A	20	42213444	42320760	20	-0.284	NEUTRAL	NA	3	"IFT52,MYBL2,SGK2"
TCGA.AG.3909.01A	20	42223287	42242442	6	-0.5143	NEUTRAL	NA	1	IFT52
TCGA.AG.3906.01A	20	42320760	42635215	13	0.3777	NEUTRAL	NA	3	"GTSF1L,MYBL2,TOX2"
TCGA.AY.A71X	20	42645377	42980518	131	-0.2938	NEUTRAL	NA	6	"FITM2,GDAP1L1,JPH2,OSER1,R3HDML,TOX2"
TCGA.AG.3906.01A	20	42679908	42697241	6	-0.1537	NEUTRAL	NA	1	TOX2
TCGA.AG.3909.01A	20	42679908	42891832	18	-0.0725	NEUTRAL	NA	4	"GDAP1L1,JPH2,OSER1,TOX2"
TCGA.AA.A00N.01A	20	42682889	43142505	57	-0.2419	NEUTRAL	NA	10	"C20orf62,FITM2,GDAP1L1,HNF4A,JPH2,OSER1,R3HDML,SERINC3,TOX2,TTPAL"
TCGA.AG.3611.01A	20	42743380	42788269	4	-0.241	NEUTRAL	NA	1	JPH2
TCGA.AA.A00L.01A	20	42744253	42788269	3	-0.1814	NEUTRAL	NA	1	JPH2
TCGA.AG.3611.01A	20	42806511	44505684	211	0.1764	NEUTRAL	NA	51	"ACOT8,ADA,C20orf62,DBNDD2,DNTTIP1,EPPIN,EPPIN-WFDC6,FITM2,GDAP1L1,HNF4A,JPH2,KCNK15,KCNS1,MATN4,OSER1,PABPC1L,PI3,PIGT,PKIG,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SLPI,SNX21,SPINT3,SPINT4,STK4,SYS1,TNNC2,TOMM34,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZSWIM3"
TCGA.AA.A01Q.01A	20	42875948	43243151	41	0.1828	NEUTRAL	NA	8	"C20orf62,FITM2,GDAP1L1,HNF4A,PKIG,R3HDML,SERINC3,TTPAL"
TCGA.AY.A71X	20	42985354	53305250	3764	0.0506	NEUTRAL	NA	105	Too-Many
TCGA.AA.A01Q.01A	20	43251162	43374511	12	0.0099	NEUTRAL	NA	3	"ADA,KCNK15,WISP2"
TCGA.AA.A010.01A	20	43257646	43374511	7	0.0684	NEUTRAL	NA	3	"ADA,KCNK15,WISP2"
TCGA.AA.A00N.01A	20	43264802	43438778	13	0.0154	NEUTRAL	NA	4	"ADA,KCNK15,RIMS4,WISP2"
TCGA.CM.6168	20	43278693	62912462	7632	0.2091	NEUTRAL	NA	204	Too-Many
TCGA.AA.A01Q.01A	20	43378769	43534980	12	-0.4822	NEUTRAL	NA	3	"KCNK15,RIMS4,YWHAB"
TCGA.AA.3850	20	43492916	44357710	309	0.08245	NEUTRAL	NA	30	"DBNDD2,EPPIN,EPPIN-WFDC6,KCNS1,MATN4,PABPC1L,PI3,PIGT,RBPJL,SDC4,SEMG1,SEMG2,SLPI,SPINT3,SPINT4,STK4,SYS1,TOMM34,TP53TG5,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC5,WFDC6,WFDC8,WFDC9,YWHAB"
TCGA.AG.3906.01A	20	43530135	43629761	32	-0.1207	NEUTRAL	NA	4	"PABPC1L,STK4,TOMM34,YWHAB"
TCGA.AA.A01Q.01A	20	43547526	43931988	44	0.2433	NEUTRAL	NA	11	"KCNS1,MATN4,PABPC1L,PI3,SEMG1,SEMG2,SLPI,STK4,TOMM34,WFDC12,WFDC5"
TCGA.AG.3909.01A	20	43571702	43610453	9	0.1261	NEUTRAL	NA	2	"STK4,TOMM34"
TCGA.AG.A00C.01A	20	43625788	43883041	22	0.1428	NEUTRAL	NA	8	"KCNS1,PI3,SEMG1,SEMG2,SLPI,STK4,WFDC12,WFDC5"
TCGA.AA.A010.01A	20	43803507	44657908	195	0.2425	NEUTRAL	NA	39	"ACOT8,CTSA,DBNDD2,DNTTIP1,EPPIN,EPPIN-WFDC6,MATN4,MMP9,NEURL2,PCIF1,PI3,PIGT,PLTP,RBPJL,SDC4,SEMG1,SEMG2,SLC12A5,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SYS1,TNNC2,TP53TG5,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC13,WFDC2,WFDC3,WFDC6,WFDC8,WFDC9,ZNF335,ZSWIM1,ZSWIM3"
TCGA.DM.A285	20	43851093	43904094	25	0.3552	NEUTRAL	NA	2	"SEMG2,SLPI"
TCGA.AG.A036.01A	20	43872868	49675088	558	0.1948	NEUTRAL	NA	76	"ACOT8,ADNP,ARFGEF2,B4GALT5,BCAS4,CD40,CDH22,CEBPB,CSE1L,CTSA,DBNDD2,DDX27,DNTTIP1,DPM1,ELMO2,EPPIN,EPPIN-WFDC6,EYA2,FAM65C,KCNB1,KCNG1,LINC01272,MATN4,MMP9,MOCS3,NCOA3,NCOA5,NEURL2,OCSTAMP,PARD6B,PCIF1,PIGT,PLTP,PREX1,PTGIS,PTPN1,RBPJL,RNF114,SDC4,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLC9A8,SLPI,SNAI1,SNX21,SPATA2,SPATA25,SPINT3,SPINT4,STAU1,SULF2,SYS1,TMEM189,TMEM189-UBE2V1,TNNC2,TP53RK,TP53TG5,UBE2C,UBE2V1,WFDC10A,WFDC10B,WFDC11,WFDC13,WFDC2,WFDC3,WFDC6,WFDC8,WFDC9,ZMYND8,ZNF334,ZNF335,ZNFX1,ZSWIM1,ZSWIM3"
TCGA.AG.3909.01A	20	43929509	43961589	14	-0.056	NEUTRAL	NA	3	"MATN4,RBPJL,SDC4"
TCGA.AG.4021	20	43931095	62912462	7414	-0.0458	NEUTRAL	NA	189	Too-Many
TCGA.AA.A01Q.01A	20	43932841	43961589	14	-0.4889	NEUTRAL	NA	3	"MATN4,RBPJL,SDC4"
TCGA.AA.A01Q.01A	20	43964374	44486438	90	0.1572	NEUTRAL	NA	24	"ACOT8,DBNDD2,DNTTIP1,EPPIN,EPPIN-WFDC6,PIGT,SDC4,SNX21,SPINT3,SPINT4,SYS1,TNNC2,TP53TG5,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC13,WFDC2,WFDC3,WFDC6,WFDC8,WFDC9,ZSWIM3"
TCGA.AA.A00N.01A	20	43976893	44099012	22	0.129	NEUTRAL	NA	6	"DBNDD2,PIGT,SDC4,SYS1,TP53TG5,WFDC2"
TCGA.AG.3909.01A	20	44108225	44108505	2	-0.4054	NEUTRAL	NA	1	WFDC2
TCGA.AG.3909.01A	20	44259491	44279089	4	-0.2842	NEUTRAL	NA	3	"WFDC10A,WFDC11,WFDC9"
TCGA.AA.A00N.01A	20	44313429	44405663	13	0.3371	NEUTRAL	NA	4	"SPINT4,WFDC10B,WFDC13,WFDC3"
TCGA.AZ.4682	20	44342338	44378210	16	0.0099	NEUTRAL	NA	1	SPINT4
TCGA.AA.3855	20	44350930	44378210	16	0.1656	NEUTRAL	NA	1	SPINT4
TCGA.AA.3850	20	44359846	49506194	1775	0.33675	NEUTRAL	NA	53	"ACOT8,ADNP,ARFGEF2,B4GALT5,BCAS4,CD40,CDH22,CEBPB,CSE1L,CTSA,DDX27,DNTTIP1,ELMO2,EYA2,FAM65C,KCNB1,LINC01272,MMP9,NCOA3,NCOA5,NEURL2,OCSTAMP,PARD6B,PCIF1,PLTP,PREX1,PTGIS,PTPN1,RNF114,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLC9A8,SNAI1,SNX21,SPATA2,SPATA25,STAU1,SULF2,TMEM189,TMEM189-UBE2V1,TNNC2,TP53RK,UBE2C,UBE2V1,WFDC3,ZMYND8,ZNF334,ZNF335,ZNFX1,ZSWIM1,ZSWIM3"
TCGA.A6.3808.01A	20	44378510	44596353	93	-0.2912	NEUTRAL	NA	14	"ACOT8,CTSA,DNTTIP1,NEURL2,PCIF1,PLTP,SNX21,SPATA25,TNNC2,UBE2C,WFDC3,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AG.A01L.01A	20	44402976	44463546	26	0.243	NEUTRAL	NA	5	"DNTTIP1,SNX21,TNNC2,UBE2C,WFDC3"
TCGA.AG.3909.01A	20	44416423	44439450	13	-0.0167	NEUTRAL	NA	2	"DNTTIP1,WFDC3"
TCGA.AA.A01Q.01A	20	44505305	45011997	132	-0.4265	NEUTRAL	NA	15	"CD40,CDH22,CTSA,ELMO2,MMP9,NCOA5,NEURL2,PCIF1,PLTP,SLC12A5,SLC35C2,SPATA25,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AG.3909.01A	20	44520849	44680267	66	0.0795	NEUTRAL	NA	6	"CTSA,MMP9,PCIF1,PLTP,SLC12A5,ZNF335"
TCGA.AG.A01L.01A	20	44521808	44539740	16	0.2256	NEUTRAL	NA	2	"CTSA,PLTP"
TCGA.AG.3611.01A	20	44526603	44596894	33	0.1936	NEUTRAL	NA	4	"CTSA,PCIF1,PLTP,ZNF335"
TCGA.AA.A00N.01A	20	44526603	44637528	36	-0.1034	NEUTRAL	NA	4	"CTSA,PCIF1,PLTP,ZNF335"
TCGA.AG.3611.01A	20	44598043	44869555	59	-0.073	NEUTRAL	NA	6	"CD40,CDH22,MMP9,NCOA5,SLC12A5,ZNF335"
TCGA.AG.4009.01A	20	44676592	44697094	15	0.2857	NEUTRAL	NA	2	"NCOA5,SLC12A5"
TCGA.G4.6298	20	44744721	62912462	7149	0.3148	NEUTRAL	NA	153	Too-Many
TCGA.AA.A010.01A	20	44746922	44803118	9	0.3119	NEUTRAL	NA	2	"CD40,CDH22"
TCGA.AA.A00N.01A	20	44746922	44986986	27	0.0249	NEUTRAL	NA	3	"CD40,CDH22,SLC35C2"
TCGA.G4.6299	20	44905255	53132516	3058	0.254	NEUTRAL	NA	48	"ADNP,ARFGEF2,ATP9A,B4GALT5,BCAS1,BCAS4,CDH22,CEBPB,CSE1L,CYP24A1,DDX27,DOK5,DPM1,ELMO2,EYA2,FAM65C,KCNB1,KCNG1,LINC01272,MOCS3,NCOA3,NFATC2,OCSTAMP,PARD6B,PFDN4,PREX1,PTGIS,PTPN1,RNF114,SALL4,SLC13A3,SLC2A10,SLC35C2,SLC9A8,SNAI1,SPATA2,STAU1,SULF2,TMEM189,TMEM189-UBE2V1,TP53RK,TSHZ2,UBE2V1,ZFP64,ZMYND8,ZNF217,ZNF334,ZNFX1"
TCGA.AG.3611.01A	20	44983485	45237487	41	-0.0104	NEUTRAL	NA	5	"ELMO2,OCSTAMP,SLC13A3,SLC35C2,ZNF334"
TCGA.AA.A010.01A	20	45002919	45113609	14	-0.4475	NEUTRAL	NA	1	ELMO2
TCGA.AA.A01Q.01A	20	45014712	46288356	95	0.1606	NEUTRAL	NA	10	"ELMO2,EYA2,NCOA3,OCSTAMP,SLC13A3,SLC2A10,SULF2,TP53RK,ZMYND8,ZNF334"
TCGA.AZ.4614	20	45044829	62912462	6959	-0.0082	NEUTRAL	NA	149	Too-Many
TCGA.AA.3681	20	45181440	62912462	6997	0.3609	NEUTRAL	NA	147	Too-Many
TCGA.AG.3611.01A	20	45239053	46267735	58	0.3374	NEUTRAL	NA	6	"EYA2,NCOA3,SLC13A3,SLC2A10,TP53RK,ZMYND8"
TCGA.AA.A00N.01A	20	45855889	47582359	104	0.1723	NEUTRAL	NA	5	"ARFGEF2,NCOA3,PREX1,SULF2,ZMYND8"
TCGA.AA.A01I.01A	20	45890982	62904524	863	0.0901	NEUTRAL	NA	143	Too-Many
TCGA.AA.A010.01A	20	46250937	46268290	13	0.0924	NEUTRAL	NA	1	NCOA3
TCGA.AG.3611.01A	20	46268290	46292802	15	-0.1236	NEUTRAL	NA	2	"NCOA3,SULF2"
TCGA.AA.A010.01A	20	46270945	46281637	6	-0.3923	NEUTRAL	NA	1	NCOA3
TCGA.AA.A010.01A	20	46282124	46288356	4	0.0236	NEUTRAL	NA	2	"NCOA3,SULF2"
TCGA.AA.A01F.01A	20	46293904	46300903	4	-0.4121	NEUTRAL	NA	1	SULF2
TCGA.AG.3611.01A	20	46293904	47683673	89	0.1951	NEUTRAL	NA	4	"ARFGEF2,CSE1L,PREX1,SULF2"
TCGA.AA.A01Q.01A	20	46305230	47244028	11	0.1637	NEUTRAL	NA	2	"PREX1,SULF2"
TCGA.AA.3679	20	46565798	46591847	20	0.3074	NEUTRAL	NA	0	None
TCGA.DM.A285	20	46638085	46918230	174	0.3157	NEUTRAL	NA	0	None
TCGA.AA.A01Q.01A	20	47244362	47567821	39	-0.4438	NEUTRAL	NA	2	"ARFGEF2,PREX1"
TCGA.AG.4009.01A	20	47557650	47570052	5	0.1833	NEUTRAL	NA	1	ARFGEF2
TCGA.A6.3808.01A	20	47567821	55904887	370	0.0714	NEUTRAL	NA	48	"ADNP,ARFGEF2,ATP9A,AURKA,B4GALT5,BCAS1,BCAS4,BMP7,CASS4,CBLN4,CEBPB,CSE1L,CSTF1,CYP24A1,DDX27,DOK5,DPM1,FAM209A,FAM209B,FAM210B,FAM65C,GCNT7,KCNB1,KCNG1,LINC01272,MC3R,MOCS3,NFATC2,PARD6B,PFDN4,PTGIS,PTPN1,RNF114,RTFDC1,SALL4,SLC9A8,SNAI1,SPATA2,SPO11,STAU1,TFAP2C,TMEM189,TMEM189-UBE2V1,TSHZ2,UBE2V1,ZFP64,ZNF217,ZNFX1"
TCGA.AA.A01Q.01A	20	47569190	48127524	98	0.1978	NEUTRAL	NA	7	"ARFGEF2,CSE1L,DDX27,KCNB1,PTGIS,STAU1,ZNFX1"
TCGA.AA.A010.01A	20	47580305	48746046	151	0.3016	NEUTRAL	NA	15	"ARFGEF2,B4GALT5,CSE1L,DDX27,KCNB1,PTGIS,RNF114,SLC9A8,SNAI1,SPATA2,STAU1,TMEM189,TMEM189-UBE2V1,UBE2V1,ZNFX1"
TCGA.AA.A00N.01A	20	47632767	47641808	6	0.1263	NEUTRAL	NA	1	ARFGEF2
TCGA.AA.A00N.01A	20	47682677	47693483	9	0.054	NEUTRAL	NA	1	CSE1L
TCGA.AA.A00N.01A	20	47842916	47881201	22	0.2045	NEUTRAL	NA	2	"DDX27,ZNFX1"
TCGA.AG.3611.01A	20	47846688	62836858	793	0.1244	NEUTRAL	NA	135	Too-Many
TCGA.5M.AATE	20	48201133	48220011	5	0.1641	NEUTRAL	NA	0	None
TCGA.DC.6157	20	48220023	48220101	3	-0.5061	NEUTRAL	NA	0	None
TCGA.AA.A01Q.01A	20	48252800	48431498	11	0.2399	NEUTRAL	NA	2	"B4GALT5,SLC9A8"
TCGA.AA.A01Q.01A	20	48439541	50071063	87	-0.159	NEUTRAL	NA	18	"ADNP,BCAS4,CEBPB,DPM1,FAM65C,KCNG1,LINC01272,MOCS3,NFATC2,PARD6B,PTPN1,RNF114,SLC9A8,SNAI1,SPATA2,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.AG.3909.01A	20	48494459	48562646	11	0.0559	NEUTRAL	NA	3	"RNF114,SLC9A8,SPATA2"
TCGA.AG.A01N.01A	20	48504339	48562646	7	-0.3516	NEUTRAL	NA	3	"RNF114,SLC9A8,SPATA2"
TCGA.AA.A00N.01A	20	48522117	49373152	59	-0.4758	NEUTRAL	NA	11	"CEBPB,FAM65C,LINC01272,PARD6B,PTPN1,RNF114,SNAI1,SPATA2,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.AM.5820	20	48600923	55969696	3063	0.375	NEUTRAL	NA	40	"ADNP,ATP9A,AURKA,BCAS1,BCAS4,BMP7,CASS4,CBLN4,CEBPB,CSTF1,CYP24A1,DOK5,DPM1,FAM209A,FAM209B,FAM210B,FAM65C,GCNT7,KCNG1,LINC01272,MC3R,MOCS3,MTRNR2L3,NFATC2,PARD6B,PFDN4,PTPN1,RAE1,RBM38,RTFDC1,SALL4,SNAI1,SPO11,TFAP2C,TMEM189,TMEM189-UBE2V1,TSHZ2,UBE2V1,ZFP64,ZNF217"
TCGA.DC.6160.01A	20	48680630	49008300	22	-0.0096	NEUTRAL	NA	5	"CEBPB,LINC01272,TMEM189,TMEM189-UBE2V1,UBE2V1"
TCGA.DC.6157	20	48743795	55122724	2598	0.2593	NEUTRAL	NA	32	"ADNP,ATP9A,AURKA,BCAS1,BCAS4,CASS4,CBLN4,CEBPB,CSTF1,CYP24A1,DOK5,DPM1,FAM209A,FAM209B,FAM210B,FAM65C,GCNT7,KCNG1,LINC01272,MC3R,MOCS3,NFATC2,PARD6B,PFDN4,PTPN1,RTFDC1,SALL4,TMEM189,TMEM189-UBE2V1,TSHZ2,ZFP64,ZNF217"
TCGA.AA.A010.01A	20	49126997	49510112	42	0.204	NEUTRAL	NA	5	"ADNP,BCAS4,FAM65C,PARD6B,PTPN1"
TCGA.AG.3909.01A	20	49202300	49366189	20	0.2443	NEUTRAL	NA	2	"FAM65C,PARD6B"
TCGA.AF.2689	20	49228813	49451188	46	0.2326	NEUTRAL	NA	3	"BCAS4,FAM65C,PARD6B"
TCGA.AA.3850	20	49508682	49551285	15	-0.22905	NEUTRAL	NA	1	ADNP
TCGA.A6.6782	20	49551285	62912462	5447	0.1131	NEUTRAL	NA	117	Too-Many
TCGA.CK.5914.01A	20	49551620	49577562	10	0.3603	NEUTRAL	NA	2	"DPM1,MOCS3"
TCGA.AG.3909.01A	20	49551620	50139648	21	0.2505	NEUTRAL	NA	4	"DPM1,KCNG1,MOCS3,NFATC2"
TCGA.AA.3850	20	49563099	50243844	304	0.34965	NEUTRAL	NA	5	"ATP9A,DPM1,KCNG1,MOCS3,NFATC2"
TCGA.AA.A010.01A	20	49571673	50015149	8	-0.0793	NEUTRAL	NA	4	"DPM1,KCNG1,MOCS3,NFATC2"
TCGA.AG.A036.01A	20	49677488	54009147	77	-0.1561	NEUTRAL	NA	10	"ATP9A,BCAS1,CYP24A1,DOK5,NFATC2,PFDN4,SALL4,TSHZ2,ZFP64,ZNF217"
TCGA.AA.A01Q.01A	20	50090500	55043697	111	0.1632	NEUTRAL	NA	17	"ATP9A,AURKA,BCAS1,CASS4,CBLN4,CSTF1,CYP24A1,DOK5,FAM210B,MC3R,NFATC2,PFDN4,RTFDC1,SALL4,TSHZ2,ZFP64,ZNF217"
TCGA.DY.A1DG	20	50223753	55806655	2493	0.3733	NEUTRAL	NA	21	"ATP9A,AURKA,BCAS1,BMP7,CASS4,CBLN4,CSTF1,CYP24A1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,PFDN4,RTFDC1,SALL4,TFAP2C,TSHZ2,ZFP64,ZNF217"
TCGA.CM.5348	20	50290046	51237023	296	0.0275	NEUTRAL	NA	3	"ATP9A,SALL4,ZFP64"
TCGA.AA.A00N.01A	20	50384773	55904887	118	-0.0272	NEUTRAL	NA	22	"ATP9A,AURKA,BCAS1,BMP7,CASS4,CBLN4,CSTF1,CYP24A1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,PFDN4,RTFDC1,SALL4,SPO11,TFAP2C,TSHZ2,ZFP64,ZNF217"
TCGA.AG.3898	20	50752756	60688118	4532	0.2388	NEUTRAL	NA	50	"ANKRD60,APCDD1L,ATP5E,AURKA,BCAS1,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CDH4,CSTF1,CTCFL,CTSZ,CYP24A1,DOK5,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PFDN4,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TAF4,TFAP2C,TSHZ2,TUBB1,VAPB,ZBP1,ZFP64,ZNF217,ZNF831"
TCGA.DM.A1D6	20	50813507	62912462	4981	-0.0575	NEUTRAL	NA	110	Too-Many
TCGA.AA.3850	20	50904776	51328784	149	0.02875	NEUTRAL	NA	0	None
TCGA.CM.5348	20	51238449	51726908	225	0.3152	NEUTRAL	NA	1	TSHZ2
TCGA.AA.3811	20	51319120	51725164	179	0.2827	NEUTRAL	NA	1	TSHZ2
TCGA.AA.3850	20	51329866	51540917	81	-0.37905	NEUTRAL	NA	0	None
TCGA.AA.3844	20	51361283	51695028	149	0.2619	NEUTRAL	NA	1	TSHZ2
TCGA.AA.3864	20	51361466	62912462	4784	0.091	NEUTRAL	NA	110	Too-Many
TCGA.AA.3850	20	51541278	51993573	235	0.06745	NEUTRAL	NA	1	TSHZ2
TCGA.F4.6854	20	51578027	52177889	279	0.3029	NEUTRAL	NA	1	TSHZ2
TCGA.5M.AAT4	20	51739894	62912462	4614	0.1723	NEUTRAL	NA	110	Too-Many
TCGA.AA.3850	20	51994924	52308168	90	0.34625	NEUTRAL	NA	2	"TSHZ2,ZNF217"
TCGA.T9.A92H	20	52068140	60014956	3783	-0.3939	NEUTRAL	NA	48	"ANKRD60,APCDD1L,ATP5E,AURKA,BCAS1,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CDH4,CSTF1,CTCFL,CTSZ,CYP24A1,DOK5,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PFDN4,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TSHZ2,TUBB1,VAPB,ZBP1,ZNF217,ZNF831"
TCGA.CM.5348	20	52239051	52742478	223	0.2732	NEUTRAL	NA	1	BCAS1
TCGA.AA.3850	20	52407780	52926555	271	0.19245	NEUTRAL	NA	3	"BCAS1,CYP24A1,PFDN4"
TCGA.AA.3715	20	52440118	62912462	4358	0.013	NEUTRAL	NA	108	Too-Many
TCGA.AD.6965	20	52542597	52807220	164	-0.0725	NEUTRAL	NA	2	"BCAS1,CYP24A1"
TCGA.AA.A010.01A	20	52561418	52612389	9	0.0578	NEUTRAL	NA	1	BCAS1
TCGA.A6.3807	20	52643154	52668125	10	-0.32	NEUTRAL	NA	1	BCAS1
TCGA.AH.6644	20	52647807	52658560	5	-0.4392	NEUTRAL	NA	1	BCAS1
TCGA.AZ.5403	20	52647807	52658560	5	-0.0777	NEUTRAL	NA	1	BCAS1
TCGA.D5.6538	20	52647807	52658560	7	-0.2485	NEUTRAL	NA	1	BCAS1
TCGA.AA.3869	20	52647807	52658592	8	0.2938	NEUTRAL	NA	1	BCAS1
TCGA.AA.3979	20	52647807	52658592	8	-0.4749	NEUTRAL	NA	1	BCAS1
TCGA.AF.3911	20	52647807	52658592	8	-0.2697	NEUTRAL	NA	1	BCAS1
TCGA.G5.6641	20	52654546	62912462	4257	0.2735	NEUTRAL	NA	108	Too-Many
TCGA.DM.A1HB	20	52658560	62912462	4132	0.0116	NEUTRAL	NA	108	Too-Many
TCGA.AG.3909.01A	20	52774598	53092451	12	0.1541	NEUTRAL	NA	3	"CYP24A1,DOK5,PFDN4"
TCGA.AD.6965	20	52809295	55909397	1484	-0.1371	NEUTRAL	NA	15	"AURKA,BMP7,CASS4,CBLN4,CSTF1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,PFDN4,RTFDC1,SPO11,TFAP2C"
TCGA.G5.6235	20	52809295	62912462	4155	0.3774	NEUTRAL	NA	106	Too-Many
TCGA.AA.3844	20	52838540	54826637	931	0.2333	NEUTRAL	NA	3	"CBLN4,DOK5,MC3R"
TCGA.AA.3811	20	52844281	54827992	931	0.2576	NEUTRAL	NA	3	"CBLN4,DOK5,MC3R"
TCGA.AA.3850	20	52930062	54819005	884	-0.29145	NEUTRAL	NA	2	"CBLN4,DOK5"
TCGA.A6.5660	20	53022312	53339780	149	0.0352	NEUTRAL	NA	1	DOK5
TCGA.DY.A1DF	20	53033914	55975077	1405	0.3275	NEUTRAL	NA	17	"AURKA,BMP7,CASS4,CBLN4,CSTF1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,MTRNR2L3,RAE1,RBM38,RTFDC1,SPO11,TFAP2C"
TCGA.DM.A1HA	20	53302912	54726055	676	-0.0139	NEUTRAL	NA	1	CBLN4
TCGA.AG.3742	20	53315094	53751819	214	0.3724	NEUTRAL	NA	0	None
TCGA.AA.3941	20	53325603	54819005	710	0.3747	NEUTRAL	NA	1	CBLN4
TCGA.A6.5660	20	53339818	56120048	1318	0.3676	NEUTRAL	NA	17	"AURKA,BMP7,CASS4,CBLN4,CSTF1,CTCFL,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,MTRNR2L3,RAE1,RBM38,RTFDC1,SPO11,TFAP2C"
TCGA.CI.6624	20	53762964	54151187	154	-0.2063	NEUTRAL	NA	0	None
TCGA.AA.3956	20	53998780	54011628	8	-0.2562	NEUTRAL	NA	0	None
TCGA.AG.A036.01A	20	54012316	62375067	775	0.124	NEUTRAL	NA	89	"ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,AURKA,BHLHE23,BIRC7,BMP7,C20orf195,C20orf197,C20orf85,CABLES2,CASS4,CBLN4,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CSTF1,CTCFL,CTSZ,DIDO1,DPH3P1,EDN3,EEF1A2,FAM209A,FAM209B,FAM210B,FAM217B,GATA5,GCNT7,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LSM14B,MC3R,MIR1-1HG,MRGBP,MTG2,MTRNR2L3,NELFCD,NKAIN4,NPEPL1,NTSR1,OGFR,OSBPL2,PCK1,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PSMA7,PTK6,RAB22A,RAE1,RBBP8NL,RBM38,RPS21,RTEL1,RTFDC1,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SPO11,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCFL5,TFAP2C,TNFRSF6B,TUBB1,VAPB,YTHDF1,ZBP1,ZBTB46,ZGPAT,ZNF831"
TCGA.AA.3956	20	54257449	54259338	7	-0.2051	NEUTRAL	NA	0	None
TCGA.AY.A71X	20	54784977	62912462	3231	-0.0023	NEUTRAL	NA	103	Too-Many
TCGA.AA.3850	20	54820788	58489613	1666	0.33575	NEUTRAL	NA	36	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf85,CASS4,CSTF1,CTCFL,CTSZ,EDN3,FAM209A,FAM209B,FAM210B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AA.3941	20	54848976	54864488	6	0.1024	NEUTRAL	NA	0	None
TCGA.AA.A01Q.01A	20	55048333	57605309	145	-0.2806	NEUTRAL	NA	26	"ANKRD60,APCDD1L,ATP5E,BMP7,C20orf85,CTCFL,CTSZ,FAM209A,FAM209B,GCNT7,GNAS,MTRNR2L3,NELFCD,NPEPL1,PCK1,PMEPA1,RAB22A,RAE1,RBM38,RTFDC1,SPO11,STX16,TFAP2C,TUBB1,VAPB,ZBP1"
TCGA.DC.6157	20	55148807	56143168	495	0.1899	NEUTRAL	NA	8	"BMP7,CTCFL,MTRNR2L3,PCK1,RAE1,RBM38,SPO11,TFAP2C"
TCGA.AF.2692	20	55173545	55295674	51	-0.3059	NEUTRAL	NA	1	TFAP2C
TCGA.AG.4009.01A	20	55204525	55212752	6	0.2948	NEUTRAL	NA	1	TFAP2C
TCGA.AA.A010.01A	20	55208381	55212752	4	-0.3545	NEUTRAL	NA	1	TFAP2C
TCGA.AF.2692	20	55296517	60376169	2476	0.0698	NEUTRAL	NA	31	"ANKRD60,APCDD1L,ATP5E,BMP7,C20orf197,C20orf85,CDH26,CDH4,CTCFL,CTSZ,EDN3,FAM217B,GNAS,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,SLMO2,SPO11,STX16,SYCP2,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.A6.5665	20	55373555	60104658	2317	-0.4147	NEUTRAL	NA	31	"ANKRD60,APCDD1L,ATP5E,BMP7,C20orf197,C20orf85,CDH26,CDH4,CTCFL,CTSZ,EDN3,FAM217B,GNAS,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,SLMO2,SPO11,STX16,SYCP2,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AA.3548	20	55579410	62912462	2829	0.1986	NEUTRAL	NA	93	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,BMP7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTCFL,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MTRNR2L3,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCK1,PCMTD2,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RAE1,RBBP8NL,RBM38,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SPO11,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBP1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.DY.A1DG	20	55809656	60476952	2191	-0.0422	NEUTRAL	NA	31	"ANKRD60,APCDD1L,ATP5E,BMP7,C20orf197,C20orf85,CDH26,CDH4,CTCFL,CTSZ,EDN3,FAM217B,GNAS,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,SLMO2,SPO11,STX16,SYCP2,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AG.3909.01A	20	55904887	55940363	17	-0.1209	NEUTRAL	NA	3	"MTRNR2L3,RAE1,SPO11"
TCGA.CK.5914.01A	20	55906838	55968266	24	0.2367	NEUTRAL	NA	4	"MTRNR2L3,RAE1,RBM38,SPO11"
TCGA.AG.4009.01A	20	55917745	55968266	12	0.1396	NEUTRAL	NA	4	"MTRNR2L3,RAE1,RBM38,SPO11"
TCGA.AG.3909.01A	20	55941810	55953046	5	0.1677	NEUTRAL	NA	1	RAE1
TCGA.AG.A00C.01A	20	55968266	57009617	41	0.3736	NEUTRAL	NA	9	"ANKRD60,C20orf85,CTCFL,PCK1,PMEPA1,RAB22A,RBM38,VAPB,ZBP1"
TCGA.AG.3909.01A	20	56089618	56098710	6	0.3123	NEUTRAL	NA	1	CTCFL
TCGA.AA.A00N.01A	20	56179577	56793504	21	-0.3828	NEUTRAL	NA	4	"ANKRD60,C20orf85,PMEPA1,ZBP1"
TCGA.A6.3808.01A	20	56185158	58442719	150	-0.0717	NEUTRAL	NA	19	"ANKRD60,APCDD1L,ATP5E,C20orf85,CTSZ,EDN3,GNAS,NELFCD,NPEPL1,PHACTR3,PMEPA1,RAB22A,SLMO2,STX16,SYCP2,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.A6.5660	20	56650278	58173605	642	0.3704	NEUTRAL	NA	16	"ANKRD60,APCDD1L,ATP5E,C20orf85,CTSZ,EDN3,GNAS,NELFCD,NPEPL1,PHACTR3,RAB22A,SLMO2,STX16,TUBB1,VAPB,ZNF831"
TCGA.AG.4009.01A	20	56725958	57485691	43	0.0076	NEUTRAL	NA	8	"ANKRD60,APCDD1L,C20orf85,GNAS,NPEPL1,RAB22A,STX16,VAPB"
TCGA.AA.A00N.01A	20	56820993	57089648	25	-0.3752	NEUTRAL	NA	3	"APCDD1L,RAB22A,VAPB"
TCGA.AA.A010.01A	20	56846369	57227012	21	-0.2376	NEUTRAL	NA	4	"APCDD1L,RAB22A,STX16,VAPB"
TCGA.QL.A97D	20	57086673	62912462	2133	0.349	NEUTRAL	NA	80	"ABHD16B,ADRM1,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.AA.A00N.01A	20	57268771	57485691	29	-0.3909	NEUTRAL	NA	2	"GNAS,NPEPL1"
TCGA.AG.A00C.01A	20	57276025	57393228	4	0.1274	NEUTRAL	NA	1	NPEPL1
TCGA.AA.A010.01A	20	57288425	57430578	12	-0.3328	NEUTRAL	NA	2	"GNAS,NPEPL1"
TCGA.AG.3909.01A	20	57561101	57598495	21	-0.1154	NEUTRAL	NA	3	"CTSZ,NELFCD,TUBB1"
TCGA.AG.3906.01A	20	57576483	60701292	128	0.1852	NEUTRAL	NA	15	"ATP5E,C20orf197,CDH26,CDH4,CTSZ,EDN3,FAM217B,LSM14B,PHACTR3,PPP1R3D,SLMO2,SYCP2,TAF4,TUBB1,ZNF831"
TCGA.AG.3891.01A	20	57576483	60704809	130	0.2153	NEUTRAL	NA	15	"ATP5E,C20orf197,CDH26,CDH4,CTSZ,EDN3,FAM217B,LSM14B,PHACTR3,PPP1R3D,SLMO2,SYCP2,TAF4,TUBB1,ZNF831"
TCGA.AA.A01Q.01A	20	57607191	58883477	84	0.0016	NEUTRAL	NA	10	"ATP5E,C20orf197,CDH26,EDN3,FAM217B,PHACTR3,PPP1R3D,SLMO2,SYCP2,ZNF831"
TCGA.AA.A010.01A	20	57617670	57828928	8	-0.0438	NEUTRAL	NA	2	"SLMO2,ZNF831"
TCGA.AG.3909.01A	20	57766085	57781943	5	0.0519	NEUTRAL	NA	1	ZNF831
TCGA.AG.A00C.01A	20	57766728	60511766	100	0.365	NEUTRAL	NA	9	"C20orf197,CDH26,CDH4,EDN3,FAM217B,PHACTR3,PPP1R3D,SYCP2,ZNF831"
TCGA.AA.3982	20	57824959	57834274	5	-0.3392	NEUTRAL	NA	1	ZNF831
TCGA.DY.A1DF	20	58020821	62912462	1727	0.2869	NEUTRAL	NA	69	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.5660	20	58174502	59203942	501	0.0249	NEUTRAL	NA	6	"C20orf197,CDH26,FAM217B,PHACTR3,PPP1R3D,SYCP2"
TCGA.AG.3909.01A	20	58411486	58416418	3	0.2407	NEUTRAL	NA	1	PHACTR3
TCGA.AA.3941	20	58414452	58495096	7	-0.2228	NEUTRAL	NA	2	"PHACTR3,SYCP2"
TCGA.AA.3982	20	58414452	58502647	10	-0.3656	NEUTRAL	NA	2	"PHACTR3,SYCP2"
TCGA.A6.3808.01A	20	58486775	58644973	35	-0.2044	NEUTRAL	NA	5	"C20orf197,CDH26,FAM217B,PPP1R3D,SYCP2"
TCGA.AG.4009.01A	20	58490151	58519950	12	-0.2215	NEUTRAL	NA	3	"FAM217B,PPP1R3D,SYCP2"
TCGA.AG.3909.01A	20	58494124	58523212	10	0.1763	NEUTRAL	NA	3	"FAM217B,PPP1R3D,SYCP2"
TCGA.AA.3850	20	58502647	62912462	1542	0.28365	NEUTRAL	NA	68	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3509.01A	20	58514080	62904524	592	0.3038	NEUTRAL	NA	67	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AZ.4684.01A	20	58514080	62904524	592	0.1381	NEUTRAL	NA	67	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DM.A28M.01A	20	58514080	62904524	591	0.1928	NEUTRAL	NA	67	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A00N.01A	20	58533717	60509064	38	0.1485	NEUTRAL	NA	3	"C20orf197,CDH26,CDH4"
TCGA.AA.A010.01A	20	58545089	60639460	53	0.0469	NEUTRAL	NA	4	"C20orf197,CDH26,CDH4,TAF4"
TCGA.AA.3982	20	58725837	58728823	5	-0.445	NEUTRAL	NA	0	None
TCGA.F4.6856	20	58832343	59107639	149	-0.0532	NEUTRAL	NA	0	None
TCGA.DM.A1HA	20	59020692	62912462	1233	-0.0417	NEUTRAL	NA	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DC.4745	20	59113708	59122692	3	-0.4354	NEUTRAL	NA	0	None
TCGA.F4.6856	20	59134654	62912462	1187	-0.0208	NEUTRAL	NA	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.5660	20	59208833	60923131	774	-0.4607	NEUTRAL	NA	10	"ADRM1,CDH4,HRH3,LAMA5,LSM14B,MTG2,OSBPL2,PSMA7,SS18L1,TAF4"
TCGA.AA.3968	20	59530611	59569736	20	0.3191	NEUTRAL	NA	0	None
TCGA.A6.6648	20	59569736	59596952	15	0.2639	NEUTRAL	NA	0	None
TCGA.DM.A28A	20	59777872	62912462	806	-0.1006	NEUTRAL	NA	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.2675	20	59972887	60511189	214	0.1057	NEUTRAL	NA	1	CDH4
TCGA.T9.A92H	20	60024670	62912462	676	0.3768	NEUTRAL	NA	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.3583	20	60037521	60179531	46	-0.1071	NEUTRAL	NA	1	CDH4
TCGA.AG.3583	20	60180123	62912462	601	0.3462	NEUTRAL	NA	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DM.A1D7	20	60307323	62912462	561	0.0933	NEUTRAL	NA	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AF.2692	20	60376928	62912462	535	-0.3091	NEUTRAL	NA	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AD.A5EK	20	60467271	60476952	3	-0.4148	NEUTRAL	NA	1	CDH4
TCGA.AA.A02E.01A	20	60469928	62904524	215	-0.0926	NEUTRAL	NA	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.4009.01A	20	60511766	60589556	15	0.0613	NEUTRAL	NA	2	"CDH4,TAF4"
TCGA.AG.A01N.01A	20	60511766	62867856	244	0.2833	NEUTRAL	NA	62	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.CI.6624	20	60570547	62141508	347	-0.2205	NEUTRAL	NA	33	"ADRM1,ARFGAP1,BHLHE23,BIRC7,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DPH3P1,EEF1A2,GATA5,GID8,HRH3,KCNQ2,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NKAIN4,NTSR1,OGFR,OSBPL2,PSMA7,RBBP8NL,RPS21,SLC17A9,SLCO4A1,SS18L1,TAF4,TCFL5,YTHDF1"
TCGA.AA.3930.01A	20	60572579	60740428	35	0.0871	NEUTRAL	NA	4	"LSM14B,PSMA7,SS18L1,TAF4"
TCGA.AA.3862.01A	20	60582561	61464307	125	-0.4322	NEUTRAL	NA	19	"ADRM1,CABLES2,COL9A3,GATA5,HRH3,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,PSMA7,RBBP8NL,RPS21,SLCO4A1,SS18L1,TAF4"
TCGA.AG.3890	20	60612760	62912462	472	0.2947	NEUTRAL	NA	62	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A024.01A	20	60699656	62904524	270	0.2994	NEUTRAL	NA	61	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.3909.01A	20	60701292	61511463	110	0.2137	NEUTRAL	NA	21	"ADRM1,CABLES2,COL9A3,DIDO1,DPH3P1,GATA5,HRH3,LAMA5,LSM14B,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,PSMA7,RBBP8NL,RPS21,SLCO4A1,SS18L1,TCFL5"
TCGA.CK.5914.01A	20	60702594	60714120	12	0.0577	NEUTRAL	NA	2	"LSM14B,PSMA7"
TCGA.AA.A00N.01A	20	60718215	61471843	175	-0.4294	NEUTRAL	NA	17	"ADRM1,CABLES2,COL9A3,GATA5,HRH3,LAMA5,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,PSMA7,RBBP8NL,RPS21,SLCO4A1,SS18L1"
TCGA.AA.A01Q.01A	20	60718832	60793540	19	-0.0032	NEUTRAL	NA	3	"HRH3,MTG2,SS18L1"
TCGA.AG.4009.01A	20	60733710	60736450	3	-0.1239	NEUTRAL	NA	1	SS18L1
TCGA.AG.3891.01A	20	60733710	61473275	104	0.1366	NEUTRAL	NA	17	"ADRM1,CABLES2,COL9A3,GATA5,HRH3,LAMA5,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,RBBP8NL,RPS21,SLCO4A1,SS18L1,TCFL5"
TCGA.AG.3906.01A	20	60733710	61473275	76	0.1845	NEUTRAL	NA	17	"ADRM1,CABLES2,COL9A3,GATA5,HRH3,LAMA5,MIR1-1HG,MRGBP,MTG2,NTSR1,OGFR,OSBPL2,RBBP8NL,RPS21,SLCO4A1,SS18L1,TCFL5"
TCGA.AG.4009.01A	20	60737756	60921509	43	0.1502	NEUTRAL	NA	6	"ADRM1,HRH3,LAMA5,MTG2,OSBPL2,SS18L1"
TCGA.AG.3575	20	60743192	62912462	426	-0.1007	NEUTRAL	NA	59	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A02F.01A	20	60747687	62904524	132	0.1148	NEUTRAL	NA	59	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A010.01A	20	60834988	60913517	57	-0.4869	NEUTRAL	NA	3	"ADRM1,LAMA5,OSBPL2"
TCGA.AA.A01Q.01A	20	60861602	60879467	6	0.1433	NEUTRAL	NA	2	"ADRM1,OSBPL2"
TCGA.AA.3930.01A	20	60878595	60963356	19	-0.4725	NEUTRAL	NA	3	"ADRM1,LAMA5,RPS21"
TCGA.AG.A00C.01A	20	60878595	61471843	43	0.3574	NEUTRAL	NA	12	"ADRM1,CABLES2,COL9A3,GATA5,LAMA5,MIR1-1HG,MRGBP,NTSR1,OGFR,RBBP8NL,RPS21,SLCO4A1"
TCGA.AA.A01K.01A	20	60878595	62904524	158	-0.0542	NEUTRAL	NA	55	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,KCNQ2,LAMA5,LIME1,LKAAEAR1,MIR1-1HG,MRGBP,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.4009.01A	20	60962655	61167643	18	-0.4286	NEUTRAL	NA	5	"CABLES2,GATA5,MIR1-1HG,RBBP8NL,RPS21"
TCGA.AA.3930.01A	20	60965978	61440880	47	-0.1136	NEUTRAL	NA	8	"CABLES2,GATA5,MIR1-1HG,MRGBP,NTSR1,OGFR,RBBP8NL,SLCO4A1"
TCGA.AA.A00D.01A	20	60971331	61444291	25	0.3193	NEUTRAL	NA	8	"CABLES2,GATA5,MIR1-1HG,MRGBP,NTSR1,OGFR,RBBP8NL,SLCO4A1"
TCGA.AA.A01Q.01A	20	60985886	62065055	137	-0.1438	NEUTRAL	NA	21	"ARFGAP1,BHLHE23,BIRC7,CHRNA4,COL20A1,COL9A3,DIDO1,DPH3P1,GATA5,GID8,KCNQ2,MIR1-1HG,MRGBP,NKAIN4,NTSR1,OGFR,RBBP8NL,SLC17A9,SLCO4A1,TCFL5,YTHDF1"
TCGA.AA.A010.01A	20	61039853	61427894	31	-0.3669	NEUTRAL	NA	5	"GATA5,MIR1-1HG,MRGBP,NTSR1,SLCO4A1"
TCGA.DY.A1DG	20	61143486	62912462	353	-0.1066	NEUTRAL	NA	49	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MIR1-1HG,MRGBP,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.4009.01A	20	61287775	61391352	11	0.2609	NEUTRAL	NA	2	"NTSR1,SLCO4A1"
TCGA.AA.3939.01A	20	61385999	61463423	31	-0.453	NEUTRAL	NA	4	"COL9A3,MRGBP,NTSR1,OGFR"
TCGA.AG.4009.01A	20	61460044	62836858	203	-0.2746	NEUTRAL	NA	43	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AZ.6605	20	61462396	62912462	272	0.138	NEUTRAL	NA	44	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3939.01A	20	61464307	62904524	295	0.1287	NEUTRAL	NA	44	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AF.3914.01A	20	61468435	62250583	127	0.2086	NEUTRAL	NA	21	"ARFGAP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,NKAIN4,PPDPF,PTK6,SLC17A9,SRMS,TCFL5,YTHDF1"
TCGA.AA.3930.01A	20	61469973	61845179	44	0.1836	NEUTRAL	NA	8	"BHLHE23,COL9A3,DIDO1,DPH3P1,GID8,SLC17A9,TCFL5,YTHDF1"
TCGA.CK.5914.01A	20	61473275	61574292	24	0.1707	NEUTRAL	NA	4	"DIDO1,DPH3P1,GID8,TCFL5"
TCGA.AG.3891.01A	20	61510553	62339886	129	0.0977	NEUTRAL	NA	23	"ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,DIDO1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,NKAIN4,PPDPF,PTK6,RTEL1,SLC17A9,SRMS,STMN3,TNFRSF6B,YTHDF1,ZGPAT"
TCGA.AG.3727	20	61522824	61536937	10	0.1157	NEUTRAL	NA	1	DIDO1
TCGA.AG.3909.01A	20	61574800	62305245	95	0.1378	NEUTRAL	NA	19	"ARFGAP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,NKAIN4,PPDPF,PTK6,RTEL1,SLC17A9,SRMS,STMN3,YTHDF1"
TCGA.AA.3862.01A	20	61588755	62609546	171	-0.4285	NEUTRAL	NA	30	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GMEB2,HELZ2,KCNQ2,LIME1,NKAIN4,PPDPF,PTK6,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SRMS,STMN3,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.5660	20	61666804	62141508	97	0.3246	NEUTRAL	NA	8	"ARFGAP1,BIRC7,CHRNA4,COL20A1,EEF1A2,KCNQ2,NKAIN4,YTHDF1"
TCGA.AA.3695	20	61712517	61716319	5	-0.0283	NEUTRAL	NA	0	None
TCGA.AA.3930.01A	20	61846840	62273414	101	-0.2688	NEUTRAL	NA	15	"ARFGAP1,BIRC7,C20orf195,CHRNA4,COL20A1,EEF1A2,GMEB2,HELZ2,KCNQ2,NKAIN4,PPDPF,PTK6,SRMS,STMN3,YTHDF1"
TCGA.AG.3906.01A	20	61867399	62226941	60	-0.1502	NEUTRAL	NA	13	"ARFGAP1,BIRC7,C20orf195,CHRNA4,COL20A1,EEF1A2,GMEB2,HELZ2,KCNQ2,NKAIN4,PPDPF,PTK6,SRMS"
TCGA.AA.A010.01A	20	61918884	61957378	26	-0.2357	NEUTRAL	NA	2	"ARFGAP1,COL20A1"
TCGA.AA.A01Q.01A	20	62152884	62193185	23	0.0699	NEUTRAL	NA	5	"C20orf195,HELZ2,PPDPF,PTK6,SRMS"
TCGA.AA.A010.01A	20	62165453	62229063	32	-0.4153	NEUTRAL	NA	5	"C20orf195,GMEB2,HELZ2,PTK6,SRMS"
TCGA.AA.A01Q.01A	20	62223835	62305245	19	-0.1427	NEUTRAL	NA	3	"GMEB2,RTEL1,STMN3"
TCGA.AF.3914.01A	20	62275072	62904524	122	-0.1007	NEUTRAL	NA	23	"ABHD16B,ARFRP1,DNAJC5,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3930.01A	20	62290706	62904524	121	-0.0018	NEUTRAL	NA	22	"ABHD16B,ARFRP1,DNAJC5,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,TCEA2,TNFRSF6B,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A01D.01A	20	62339886	62904524	62	-0.2236	NEUTRAL	NA	19	"ABHD16B,DNAJC5,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,SAMD10,SLC2A4RG,SOX18,TCEA2,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.3725	20	62352242	62912462	100	0.1209	NEUTRAL	NA	19	"ABHD16B,DNAJC5,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,SAMD10,SLC2A4RG,SOX18,TCEA2,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.A01W.01A	20	62361843	62375067	5	0.1654	NEUTRAL	NA	4	"LIME1,SLC2A4RG,ZBTB46,ZGPAT"
TCGA.AA.A02K.01A	20	62368855	62378252	5	-0.4089	NEUTRAL	NA	3	"LIME1,SLC2A4RG,ZBTB46"
TCGA.A6.5660	20	62506946	62912462	83	0.3232	NEUTRAL	NA	14	"DNAJC5,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,SAMD10,SOX18,TCEA2,TPD52L2,UCKL1,ZNF512B"
TCGA.AA.3862.01A	20	62612538	62904524	58	0.1502	NEUTRAL	NA	9	"LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,SOX18,TCEA2"
TCGA.AA.A01Q.01A	20	62614353	62654062	12	-0.3975	NEUTRAL	NA	1	PRPF6
TCGA.AA.3861.01A	20	62614353	62904524	56	-0.3801	NEUTRAL	NA	9	"LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,SOX18,TCEA2"
TCGA.AA.A01Q.01A	20	62655856	62680523	10	0.2783	NEUTRAL	NA	2	"PRPF6,SOX18"
TCGA.AA.A01Q.01A	20	62694605	62707828	11	-0.3649	NEUTRAL	NA	2	"RGS19,TCEA2"
TCGA.AA.A02K.01A	20	62694612	62724057	13	0.1006	NEUTRAL	NA	4	"LKAAEAR1,OPRL1,RGS19,TCEA2"
TCGA.AA.A010.01A	20	62729640	62871646	23	-0.4966	NEUTRAL	NA	3	"MYT1,NPBWR2,OPRL1"
TCGA.AG.3891.01A	20	62729640	62904524	28	0.1692	NEUTRAL	NA	4	"MYT1,NPBWR2,OPRL1,PCMTD2"
TCGA.AG.3906.01A	20	62729640	62904524	26	0.0946	NEUTRAL	NA	4	"MYT1,NPBWR2,OPRL1,PCMTD2"
TCGA.AA.A02K.01A	20	62830143	62863480	16	0.3223	NEUTRAL	NA	1	MYT1
TCGA.AG.3611.01A	20	62838900	62904524	21	-0.2622	NEUTRAL	NA	2	"MYT1,PCMTD2"
TCGA.AG.3909.01A	20	62851028	62871066	7	-0.1138	NEUTRAL	NA	1	MYT1
TCGA.AA.A01Q.01A	20	62854399	62904524	13	-0.1214	NEUTRAL	NA	2	"MYT1,PCMTD2"
TCGA.AA.3511	20	62869717	62912462	23	-0.4578	NEUTRAL	NA	2	"MYT1,PCMTD2"
TCGA.CK.5914.01A	20	62871646	62904524	6	-0.0512	NEUTRAL	NA	2	"MYT1,PCMTD2"
TCGA.AG.A01W.01A	21	9884415	31175192	371	0.0714	NEUTRAL	NA	36	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AG.A036.01A	21	9884415	46908551	1982	-0.1659	NEUTRAL	NA	205	Too-Many
TCGA.F5.6811.01A	21	9884429	10079982	23	-0.0448	NEUTRAL	NA	0	None
TCGA.DC.6160.01A	21	9884429	10120480	24	-0.3782	NEUTRAL	NA	0	None
TCGA.CK.4952.01A	21	9884429	46908563	2033	-0.0848	NEUTRAL	NA	205	Too-Many
TCGA.AA.A02K.01A	21	9908281	11058126	23	-0.4106	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.F5.6811.01A	21	10120480	30937052	362	-0.3555	NEUTRAL	NA	36	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AG.3909.01A	21	10862558	10910257	5	-0.1095	NEUTRAL	NA	1	TPTE
TCGA.AA.A00N.01A	21	10862558	10959714	17	0.2815	NEUTRAL	NA	1	TPTE
TCGA.AA.3967.01A	21	10862558	11058111	23	0.2891	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.A6.3810.01A	21	10862558	11098609	24	0.3432	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AA.3509.01A	21	10862558	11098609	24	0.1181	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.CK.4948.01B	21	10862558	11098609	24	-0.4233	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AG.A011.01A	21	10862558	14982868	25	0.0245	NEUTRAL	NA	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.CM.4744.01A	21	10862558	15003240	26	0.0292	NEUTRAL	NA	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.CM.4750.01A	21	10862558	15013644	27	0.0905	NEUTRAL	NA	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.AG.A014.01A	21	10862558	15524852	31	0.3453	NEUTRAL	NA	8	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED,TPTE"
TCGA.AA.A02H.01A	21	10862558	15537527	34	-0.0831	NEUTRAL	NA	8	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED,TPTE"
TCGA.AG.A00C.01A	21	10862558	15599163	39	0.0599	NEUTRAL	NA	9	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED,RBM11,TPTE"
TCGA.AG.4009.01A	21	10862558	26979650	161	-0.2122	NEUTRAL	NA	21	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AF.3914.01A	21	10862558	27056141	158	-0.1088	NEUTRAL	NA	22	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AG.A008.01A	21	10862558	27113852	177	0.01	NEUTRAL	NA	24	"ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.A004.01A	21	10862558	27141298	179	-0.3676	NEUTRAL	NA	24	"ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AG.A01N.01A	21	10862558	28210740	208	-0.3875	NEUTRAL	NA	27	"ADAMTS1,APP,ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,CYYR1,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.A01K.01A	21	10862558	30437252	280	-0.1977	NEUTRAL	NA	33	"ADAMTS1,ADAMTS5,APP,ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,HSPA13,JAM2,LIPI,LOC388813,LTN1,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AG.3891.01A	21	10862558	31311651	321	-0.1868	NEUTRAL	NA	36	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AG.A01J.01A	21	10862558	32624016	367	0.0816	NEUTRAL	NA	71	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TIAM1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.A00O.01A	21	10862558	32638279	368	0.0656	NEUTRAL	NA	71	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TIAM1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.A02E.01A	21	10862558	32638279	371	0.1937	NEUTRAL	NA	71	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TIAM1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AG.A00Y.01A	21	10862558	33074047	388	-0.1395	NEUTRAL	NA	73	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,TIAM1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.A01C.01A	21	10862558	34134357	473	-0.27	NEUTRAL	NA	82	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf59,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HSPA13,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,PAXBP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,TPTE,URB1,USP16,USP25"
TCGA.AG.A023.01A	21	10862558	34134357	478	0.0435	NEUTRAL	NA	82	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf59,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HSPA13,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,PAXBP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,TPTE,URB1,USP16,USP25"
TCGA.AG.A02G.01A	21	10862558	38597799	799	-0.1579	NEUTRAL	NA	120	Too-Many
TCGA.AA.3862.01A	21	10862558	42861391	1160	-0.0154	NEUTRAL	NA	142	Too-Many
TCGA.AA.3861.01A	21	10862558	43187002	1169	-0.0479	NEUTRAL	NA	143	Too-Many
TCGA.AA.A024.01A	21	10862558	43707952	1110	-0.019	NEUTRAL	NA	148	Too-Many
TCGA.AA.3939.01A	21	10862558	44581148	1401	0.0402	NEUTRAL	NA	162	Too-Many
TCGA.AA.A02R.01A	21	10862558	45564654	1263	-0.1118	NEUTRAL	NA	173	Too-Many
TCGA.AA.3815.01A	21	10862558	48084135	1932	-0.0562	NEUTRAL	NA	219	Too-Many
TCGA.AA.3980.01A	21	10862558	48084135	1983	0.0488	NEUTRAL	NA	219	Too-Many
TCGA.AA.A017.01A	21	10862558	48084135	1510	-0.0942	NEUTRAL	NA	219	Too-Many
TCGA.AA.A01D.01A	21	10862558	48084135	1461	-0.2085	NEUTRAL	NA	219	Too-Many
TCGA.AA.A01I.01A	21	10862558	48084135	1563	-0.2369	NEUTRAL	NA	219	Too-Many
TCGA.AA.A029.01A	21	10862558	48084135	1497	-0.4829	NEUTRAL	NA	219	Too-Many
TCGA.AA.A02J.01A	21	10862558	48084135	1452	-0.0304	NEUTRAL	NA	219	Too-Many
TCGA.AA.A02W.01A	21	10862558	48084135	1536	-0.3295	NEUTRAL	NA	219	Too-Many
TCGA.AG.A00H.01A	21	10862558	48084135	1559	-0.0904	NEUTRAL	NA	219	Too-Many
TCGA.AG.A015.01A	21	10862558	48084135	1570	-0.147	NEUTRAL	NA	219	Too-Many
TCGA.AG.A016.01A	21	10862558	48084135	1585	-0.1141	NEUTRAL	NA	219	Too-Many
TCGA.AG.A01L.01A	21	10862558	48084135	1600	-0.2424	NEUTRAL	NA	219	Too-Many
TCGA.AG.A025.01A	21	10862558	48084135	1617	-0.1759	NEUTRAL	NA	219	Too-Many
TCGA.AG.A032.01A	21	10862558	48084135	1501	-0.0368	NEUTRAL	NA	219	Too-Many
TCGA.AH.6549.01A	21	10862558	48084135	2024	0.163	NEUTRAL	NA	219	Too-Many
TCGA.AY.A54L.01A	21	10862558	48084135	2027	-0.1052	NEUTRAL	NA	219	Too-Many
TCGA.CM.6165.01A	21	10862558	48084135	2030	-0.02	NEUTRAL	NA	219	Too-Many
TCGA.DM.A282.01A	21	10862558	48084135	2026	-0.0085	NEUTRAL	NA	219	Too-Many
TCGA.DM.A28M.01A	21	10862558	48084135	2018	0.1674	NEUTRAL	NA	219	Too-Many
TCGA.AA.3930.01A	21	10906883	11098609	22	0.2845	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AG.3906.01A	21	10906883	11098609	22	0.0761	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AA.A01F.01A	21	10906883	15003240	21	0.1047	NEUTRAL	NA	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.AG.3611.01A	21	10906883	18981279	79	0.0706	NEUTRAL	NA	16	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.AA.A00L.01A	21	10906883	27141298	139	-0.0873	NEUTRAL	NA	24	"ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.A01Q.01A	21	10906883	35003731	533	0.0696	NEUTRAL	NA	95	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CRYZL1,CXADR,CYYR1,DNAJC28,DONSON,EVA1C,GABPA,GART,GRIK1,HSPA13,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,OLIG1,OLIG2,PAXBP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TMPRSS15,TPTE,URB1,USP16,USP25"
TCGA.AA.A00J.01A	21	10906883	48084135	1512	0.0085	NEUTRAL	NA	219	Too-Many
TCGA.AA.A00K.01A	21	10906883	48084135	1515	0.2984	NEUTRAL	NA	219	Too-Many
TCGA.AG.3909.01A	21	10914326	11098609	19	0.3002	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AA.3860	21	10971565	14369206	2	0.2736	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.DC.6157	21	10971565	14603576	5	0.264	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.G4.6299	21	10971565	14635152	6	0.0313	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.A6.5666	21	10971565	14649797	8	0.3008	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AA.A01Z	21	10971565	14693380	14	-0.1636	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.CM.6675	21	10971565	14693380	14	0.0603	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.DM.A1D0	21	10971565	14736297	15	0.0115	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AZ.4681	21	10971565	14838551	36	-0.174	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.DC.6158	21	10971565	14929929	38	-0.0765	NEUTRAL	NA	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AA.3662	21	10971565	15291915	47	-0.3267	NEUTRAL	NA	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.CM.6161	21	10971565	15471359	70	-0.3016	NEUTRAL	NA	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.AA.3870	21	10971565	15553089	98	0.0135	NEUTRAL	NA	8	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED,TPTE"
TCGA.T9.A92H	21	10971565	15553089	97	-0.0634	NEUTRAL	NA	8	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED,TPTE"
TCGA.A6.2672	21	10971565	15857845	215	-0.4373	NEUTRAL	NA	11	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,POTED,RBM11,SAMSN1,TPTE"
TCGA.AG.3732	21	10971565	16245511	382	0.3192	NEUTRAL	NA	12	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,POTED,RBM11,SAMSN1,TPTE"
TCGA.AY.6196	21	10971565	16318225	392	0.087	NEUTRAL	NA	12	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,POTED,RBM11,SAMSN1,TPTE"
TCGA.AG.3602	21	10971565	16415731	431	-0.024	NEUTRAL	NA	13	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE"
TCGA.F4.6459	21	10971565	16850921	611	-0.0595	NEUTRAL	NA	13	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE"
TCGA.AF.2693	21	10971565	17086365	709	-0.5108	NEUTRAL	NA	13	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE"
TCGA.AG.3881	21	10971565	17438340	792	-0.3445	NEUTRAL	NA	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.DC.4749	21	10971565	17608052	845	0.0385	NEUTRAL	NA	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.AA.3673	21	10971565	17685245	872	0.0517	NEUTRAL	NA	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.AA.3675	21	10971565	17685245	871	-0.012	NEUTRAL	NA	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.A6.A56B	21	10971565	17760286	895	0.0043	NEUTRAL	NA	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.DM.A0XD	21	10971565	17898156	949	0.018	NEUTRAL	NA	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.DM.A1D7	21	10971565	17898156	956	-0.0325	NEUTRAL	NA	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.DM.A28K	21	10971565	18744414	1197	-0.0171	NEUTRAL	NA	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.CK.6748	21	10971565	19407811	1451	-0.4715	NEUTRAL	NA	18	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.DM.A28H	21	10971565	19408301	1451	0.0377	NEUTRAL	NA	18	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.CM.5348	21	10971565	19509706	1515	0.2166	NEUTRAL	NA	18	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.AA.3555	21	10971565	19636019	1565	0.0101	NEUTRAL	NA	18	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.AD.6965	21	10971565	19636019	1559	-0.1277	NEUTRAL	NA	18	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.AA.3869	21	10971565	20221072	1793	-0.4501	NEUTRAL	NA	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.3556	21	10971565	21768733	2342	-0.0437	NEUTRAL	NA	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AY.4071	21	10971565	22076518	2471	-0.4007	NEUTRAL	NA	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.4N.A93T	21	10971565	22608320	2691	0.0447	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AM.5820	21	10971565	23270642	2963	-0.0677	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AM.5821	21	10971565	23270642	2957	-0.1031	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.DY.A1DC	21	10971565	23578793	3047	0.0186	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.CI.6621	21	10971565	23642859	3059	-0.0814	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AY.A71X	21	10971565	23664657	3081	-0.3118	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AF.A56L	21	10971565	24016505	3200	0.0254	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.D5.6931	21	10971565	24084534	3213	0.0086	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AD.6889	21	10971565	24253545	3263	0.0731	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.F5.6863	21	10971565	24331428	3275	-0.3589	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.3518	21	10971565	24529095	3355	-0.0229	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AG.3742	21	10971565	24699381	3411	0.0242	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AY.5543	21	10971565	25257693	3619	0.0178	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.A6.6137	21	10971565	25292865	3669	0.0177	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.A6.2686	21	10971565	26201175	4062	-0.0093	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.NH.A6GA	21	10971565	26706094	4213	-0.3482	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.A6.5664	21	10971565	26820290	4227	-0.3457	NEUTRAL	NA	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.3666	21	10971565	29414454	5286	0.0262	NEUTRAL	NA	28	"ADAMTS1,ADAMTS5,APP,ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,CYYR1,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.3867	21	10971565	29960849	5514	-0.3282	NEUTRAL	NA	28	"ADAMTS1,ADAMTS5,APP,ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,CYYR1,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AF.3913	21	10971565	31289930	5971	-0.1014	NEUTRAL	NA	36	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.3972	21	10971565	32033045	6224	-0.0179	NEUTRAL	NA	63	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.3850	21	10971565	32191580	6264	-0.43025	NEUTRAL	NA	67	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.3529	21	10971565	32321985	6301	0.005	NEUTRAL	NA	69	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.RU.A8FL	21	10971565	32432161	6345	0.2738	NEUTRAL	NA	70	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AG.A026	21	10971565	32434137	6345	-0.0156	NEUTRAL	NA	70	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.3982	21	10971565	32450136	6359	-0.3325	NEUTRAL	NA	70	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.3811	21	10971565	32485199	6366	-0.4924	NEUTRAL	NA	70	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.EI.6508	21	10971565	32667895	6432	-0.3265	NEUTRAL	NA	71	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TIAM1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AG.3592	21	10971565	32744500	6483	0.0161	NEUTRAL	NA	71	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TIAM1,TMPRSS15,TPTE,USP16,USP25"
TCGA.CM.6170	21	10971565	34068581	6933	-0.5062	NEUTRAL	NA	81	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf59,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HSPA13,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,TPTE,URB1,USP16,USP25"
TCGA.EI.6512	21	10971565	34510765	7069	-0.4057	NEUTRAL	NA	85	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HSPA13,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,OLIG1,OLIG2,PAXBP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,TPTE,URB1,USP16,USP25"
TCGA.AA.3979	21	10971565	35264807	7260	-0.0307	NEUTRAL	NA	96	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CRYZL1,CXADR,CYYR1,DNAJC28,DONSON,EVA1C,GABPA,GART,GRIK1,HSPA13,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,OLIG1,OLIG2,PAXBP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TMPRSS15,TPTE,URB1,USP16,USP25"
TCGA.AA.3516	21	10971565	35725650	7446	-0.0245	NEUTRAL	NA	100	"ADAMTS1,ADAMTS5,APP,ATP5J,ATP5O,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CRYZL1,CXADR,CYYR1,DNAJC28,DONSON,EVA1C,GABPA,GART,GRIK1,HSPA13,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LOC400863,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,MRPS6,N6AMT1,NCAM2,NRIP1,OLIG1,OLIG2,PAXBP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SLC5A3,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TMPRSS15,TPTE,URB1,USP16,USP25"
TCGA.AG.3894	21	10971565	36245235	7629	0.008	NEUTRAL	NA	107	Too-Many
TCGA.D5.6926	21	10971565	36878035	7913	-0.4712	NEUTRAL	NA	107	Too-Many
TCGA.AA.3866	21	10971565	36916786	7952	-0.2705	NEUTRAL	NA	107	Too-Many
TCGA.D5.6922	21	10971565	37231879	8059	-0.3321	NEUTRAL	NA	107	Too-Many
TCGA.AG.3883	21	10971565	37419206	8172	0.0017	NEUTRAL	NA	108	Too-Many
TCGA.AH.6644	21	10971565	38163514	8392	0.2508	NEUTRAL	NA	116	Too-Many
TCGA.AD.6964	21	10971565	38290210	8450	0.0439	NEUTRAL	NA	116	Too-Many
TCGA.CM.5864	21	10971565	38390715	8483	-0.1882	NEUTRAL	NA	117	Too-Many
TCGA.CM.4746	21	10971565	40060765	9149	-0.0051	NEUTRAL	NA	125	Too-Many
TCGA.AG.3727	21	10971565	40182176	9204	-0.0038	NEUTRAL	NA	126	Too-Many
TCGA.DM.A28F	21	10971565	40303847	9234	0.3429	NEUTRAL	NA	126	Too-Many
TCGA.QL.A97D	21	10971565	40723255	9453	0.1632	NEUTRAL	NA	129	Too-Many
TCGA.A6.6648	21	10971565	40938030	9521	-0.0083	NEUTRAL	NA	132	Too-Many
TCGA.AF.6672	21	10971565	41012145	9535	-0.3792	NEUTRAL	NA	133	Too-Many
TCGA.AA.3977	21	10971565	41674494	9965	-0.0083	NEUTRAL	NA	136	Too-Many
TCGA.AA.3667	21	10971565	42203218	10257	-0.0592	NEUTRAL	NA	136	Too-Many
TCGA.CA.5797	21	10971565	42826550	10533	-0.397	NEUTRAL	NA	141	Too-Many
TCGA.CA.6719	21	10971565	44177072	11124	0.0239	NEUTRAL	NA	156	Too-Many
TCGA.AA.A01S	21	10971565	44704842	11311	-0.00415	NEUTRAL	NA	163	Too-Many
TCGA.AA.3524	21	10971565	44829086	11362	0.0016	NEUTRAL	NA	163	Too-Many
TCGA.D5.5541	21	10971565	45083096	11425	0.0054	NEUTRAL	NA	166	Too-Many
TCGA.AA.3681	21	10971565	46476334	11839	-0.0104	NEUTRAL	NA	202	Too-Many
TCGA.AA.3696	21	10971565	46476334	11842	0.0073	NEUTRAL	NA	202	Too-Many
TCGA.AA.3715	21	10971565	46476334	11842	-0.0226	NEUTRAL	NA	202	Too-Many
TCGA.AA.3693	21	10971565	46848155	11961	-0.0104	NEUTRAL	NA	205	Too-Many
TCGA.AF.2692	21	10971565	46848438	11962	-0.0192	NEUTRAL	NA	205	Too-Many
TCGA.EI.6885	21	10971565	47689733	12133	0.2201	NEUTRAL	NA	213	Too-Many
TCGA.AG.3726	21	10971565	48077811	12281	-0.0651	NEUTRAL	NA	219	Too-Many
TCGA.3L.AA1B	21	10971565	48084819	12277	-0.0705	NEUTRAL	NA	219	Too-Many
TCGA.4T.AA8H	21	10971565	48084819	12286	0.3576	NEUTRAL	NA	219	Too-Many
TCGA.5M.AAT4	21	10971565	48084819	12288	-0.1518	NEUTRAL	NA	219	Too-Many
TCGA.5M.AAT6	21	10971565	48084819	12285	-0.0164	NEUTRAL	NA	219	Too-Many
TCGA.5M.AATA	21	10971565	48084819	12273	0.0454	NEUTRAL	NA	219	Too-Many
TCGA.5M.AATE	21	10971565	48084819	12288	-0.2126	NEUTRAL	NA	219	Too-Many
TCGA.A6.2671	21	10971565	48084819	12277	-0.2934	NEUTRAL	NA	219	Too-Many
TCGA.A6.2674	21	10971565	48084819	12281	-0.1783	NEUTRAL	NA	219	Too-Many
TCGA.A6.2675	21	10971565	48084819	12193	0.0037	NEUTRAL	NA	219	Too-Many
TCGA.A6.2677	21	10971565	48084819	11244	-0.0809	NEUTRAL	NA	219	Too-Many
TCGA.A6.2679	21	10971565	48084819	12267	0.1132	NEUTRAL	NA	219	Too-Many
TCGA.A6.2680	21	10971565	48084819	12268	-0.0301	NEUTRAL	NA	219	Too-Many
TCGA.A6.2681	21	10971565	48084819	12275	0	NEUTRAL	NA	219	Too-Many
TCGA.A6.2682	21	10971565	48084819	12067	-0.0761	NEUTRAL	NA	219	Too-Many
TCGA.A6.2683	21	10971565	48084819	12265	-0.0425	NEUTRAL	NA	219	Too-Many
TCGA.A6.2685	21	10971565	48084819	12260	-0.0002	NEUTRAL	NA	219	Too-Many
TCGA.A6.3807	21	10971565	48084819	12238	-0.0084	NEUTRAL	NA	219	Too-Many
TCGA.A6.4105	21	10971565	48084819	12287	-0.3241	NEUTRAL	NA	219	Too-Many
TCGA.A6.4107	21	10971565	48084819	12279	0.0214	NEUTRAL	NA	219	Too-Many
TCGA.A6.5656	21	10971565	48084819	12237	-0.0258	NEUTRAL	NA	219	Too-Many
TCGA.A6.5657	21	10971565	48084819	12260	-0.004	NEUTRAL	NA	219	Too-Many
TCGA.A6.5660	21	10971565	48084819	12244	-0.0159	NEUTRAL	NA	219	Too-Many
TCGA.A6.5667	21	10971565	48084819	12276	-0.4024	NEUTRAL	NA	219	Too-Many
TCGA.A6.6138	21	10971565	48084819	12288	0.0026	NEUTRAL	NA	219	Too-Many
TCGA.A6.6140	21	10971565	48084819	12291	-0.0227	NEUTRAL	NA	219	Too-Many
TCGA.A6.6141	21	10971565	48084819	12276	-0.0034	NEUTRAL	NA	219	Too-Many
TCGA.A6.6142	21	10971565	48084819	12282	-0.0137	NEUTRAL	NA	219	Too-Many
TCGA.A6.6649	21	10971565	48084819	12289	-0.0611	NEUTRAL	NA	219	Too-Many
TCGA.A6.6650	21	10971565	48084819	11216	-0.1522	NEUTRAL	NA	219	Too-Many
TCGA.A6.6651	21	10971565	48084819	12230	-0.1813	NEUTRAL	NA	219	Too-Many
TCGA.A6.6652	21	10971565	48084819	12286	-0.0147	NEUTRAL	NA	219	Too-Many
TCGA.A6.6780	21	10971565	48084819	12253	0.0029	NEUTRAL	NA	219	Too-Many
TCGA.A6.6781	21	10971565	48084819	11223	-0.0153	NEUTRAL	NA	219	Too-Many
TCGA.A6.A565	21	10971565	48084819	12194	-0.012	NEUTRAL	NA	219	Too-Many
TCGA.A6.A566	21	10971565	48084819	12177	0.0052	NEUTRAL	NA	219	Too-Many
TCGA.AA.3488	21	10971565	48084819	12278	-0.4541	NEUTRAL	NA	219	Too-Many
TCGA.AA.3489	21	10971565	48084819	12234	-0.0277	NEUTRAL	NA	219	Too-Many
TCGA.AA.3492	21	10971565	48084819	12275	0.0048	NEUTRAL	NA	219	Too-Many
TCGA.AA.3494	21	10971565	48084819	12280	-0.0316	NEUTRAL	NA	219	Too-Many
TCGA.AA.3495	21	10971565	48084819	12276	-0.0018	NEUTRAL	NA	219	Too-Many
TCGA.AA.3496	21	10971565	48084819	12242	-0.0093	NEUTRAL	NA	219	Too-Many
TCGA.AA.3502	21	10971565	48084819	12276	0.0038	NEUTRAL	NA	219	Too-Many
TCGA.AA.3510	21	10971565	48084819	12276	-0.0061	NEUTRAL	NA	219	Too-Many
TCGA.AA.3511	21	10971565	48084819	12251	-0.0821	NEUTRAL	NA	219	Too-Many
TCGA.AA.3514	21	10971565	48084819	12276	0.0015	NEUTRAL	NA	219	Too-Many
TCGA.AA.3519	21	10971565	48084819	12284	-0.3292	NEUTRAL	NA	219	Too-Many
TCGA.AA.3527	21	10971565	48084819	12280	0.0125	NEUTRAL	NA	219	Too-Many
TCGA.AA.3532	21	10971565	48084819	12281	-0.0084	NEUTRAL	NA	219	Too-Many
TCGA.AA.3534	21	10971565	48084819	12284	-0.0178	NEUTRAL	NA	219	Too-Many
TCGA.AA.3543	21	10971565	48084819	12276	-0.0139	NEUTRAL	NA	219	Too-Many
TCGA.AA.3548	21	10971565	48084819	12290	0.0033	NEUTRAL	NA	219	Too-Many
TCGA.AA.3549	21	10971565	48084819	12289	-0.0112	NEUTRAL	NA	219	Too-Many
TCGA.AA.3558	21	10971565	48084819	12283	0.002	NEUTRAL	NA	219	Too-Many
TCGA.AA.3561	21	10971565	48084819	12292	-0.003	NEUTRAL	NA	219	Too-Many
TCGA.AA.3655	21	10971565	48084819	12284	-0.0027	NEUTRAL	NA	219	Too-Many
TCGA.AA.3663	21	10971565	48084819	12263	-0.0058	NEUTRAL	NA	219	Too-Many
TCGA.AA.3664	21	10971565	48084819	12291	-0.0122	NEUTRAL	NA	219	Too-Many
TCGA.AA.3678	21	10971565	48084819	12290	0.3175	NEUTRAL	NA	219	Too-Many
TCGA.AA.3679	21	10971565	48084819	12290	-0.0012	NEUTRAL	NA	219	Too-Many
TCGA.AA.3680	21	10971565	48084819	12290	0.0043	NEUTRAL	NA	219	Too-Many
TCGA.AA.3684	21	10971565	48084819	12288	-0.0071	NEUTRAL	NA	219	Too-Many
TCGA.AA.3685	21	10971565	48084819	12289	-0.1858	NEUTRAL	NA	219	Too-Many
TCGA.AA.3688	21	10971565	48084819	12292	-0.2698	NEUTRAL	NA	219	Too-Many
TCGA.AA.3692	21	10971565	48084819	12288	-0.229	NEUTRAL	NA	219	Too-Many
TCGA.AA.3695	21	10971565	48084819	12291	-0.3868	NEUTRAL	NA	219	Too-Many
TCGA.AA.3697	21	10971565	48084819	12276	0.0373	NEUTRAL	NA	219	Too-Many
TCGA.AA.3710	21	10971565	48084819	12287	-0.0147	NEUTRAL	NA	219	Too-Many
TCGA.AA.3712	21	10971565	48084819	12283	-0.3821	NEUTRAL	NA	219	Too-Many
TCGA.AA.3713	21	10971565	48084819	12277	0.0086	NEUTRAL	NA	219	Too-Many
TCGA.AA.3812	21	10971565	48084819	12288	-0.0106	NEUTRAL	NA	219	Too-Many
TCGA.AA.3814	21	10971565	48084819	12289	0.0217	NEUTRAL	NA	219	Too-Many
TCGA.AA.3818	21	10971565	48084819	12290	-0.0165	NEUTRAL	NA	219	Too-Many
TCGA.AA.3819	21	10971565	48084819	12287	-0.0143	NEUTRAL	NA	219	Too-Many
TCGA.AA.3821	21	10971565	48084819	12279	-0.0373	NEUTRAL	NA	219	Too-Many
TCGA.AA.3831	21	10971565	48084819	12269	0.0018	NEUTRAL	NA	219	Too-Many
TCGA.AA.3833	21	10971565	48084819	12286	-0.0031	NEUTRAL	NA	219	Too-Many
TCGA.AA.3837	21	10971565	48084819	12289	-0.3016	NEUTRAL	NA	219	Too-Many
TCGA.AA.3841	21	10971565	48084819	12292	-0.0013	NEUTRAL	NA	219	Too-Many
TCGA.AA.3842	21	10971565	48084819	12282	-0.3444	NEUTRAL	NA	219	Too-Many
TCGA.AA.3845	21	10971565	48084819	12272	-0.0035	NEUTRAL	NA	219	Too-Many
TCGA.AA.3846	21	10971565	48084819	12280	-0.0135	NEUTRAL	NA	219	Too-Many
TCGA.AA.3851	21	10971565	48084819	12282	-0.019	NEUTRAL	NA	219	Too-Many
TCGA.AA.3852	21	10971565	48084819	12291	-0.007	NEUTRAL	NA	219	Too-Many
TCGA.AA.3854	21	10971565	48084819	12290	0.004	NEUTRAL	NA	219	Too-Many
TCGA.AA.3855	21	10971565	48084819	12270	-0.0183	NEUTRAL	NA	219	Too-Many
TCGA.AA.3856	21	10971565	48084819	12290	-0.3501	NEUTRAL	NA	219	Too-Many
TCGA.AA.3858	21	10971565	48084819	12283	-0.0298	NEUTRAL	NA	219	Too-Many
TCGA.AA.3864	21	10971565	48084819	12259	0.013	NEUTRAL	NA	219	Too-Many
TCGA.AA.3872	21	10971565	48084819	12289	-0.1787	NEUTRAL	NA	219	Too-Many
TCGA.AA.3875	21	10971565	48084819	12288	-0.2009	NEUTRAL	NA	219	Too-Many
TCGA.AA.3877	21	10971565	48084819	12289	-0.0257	NEUTRAL	NA	219	Too-Many
TCGA.AA.3947	21	10971565	48084819	12267	0.0047	NEUTRAL	NA	219	Too-Many
TCGA.AA.3949	21	10971565	48084819	12278	0	NEUTRAL	NA	219	Too-Many
TCGA.AA.3950	21	10971565	48084819	12290	0.0091	NEUTRAL	NA	219	Too-Many
TCGA.AA.3952	21	10971565	48084819	12281	0.0122	NEUTRAL	NA	219	Too-Many
TCGA.AA.3955	21	10971565	48084819	12286	-0.5043	NEUTRAL	NA	219	Too-Many
TCGA.AA.3956	21	10971565	48084819	12284	0.0116	NEUTRAL	NA	219	Too-Many
TCGA.AA.3966	21	10971565	48084819	12265	-0.2823	NEUTRAL	NA	219	Too-Many
TCGA.AA.3968	21	10971565	48084819	12282	-0.45	NEUTRAL	NA	219	Too-Many
TCGA.AA.3971	21	10971565	48084819	12288	-0.0133	NEUTRAL	NA	219	Too-Many
TCGA.AA.3973	21	10971565	48084819	12283	0.0123	NEUTRAL	NA	219	Too-Many
TCGA.AA.3975	21	10971565	48084819	12274	-0.0193	NEUTRAL	NA	219	Too-Many
TCGA.AA.3976	21	10971565	48084819	12281	-0.0047	NEUTRAL	NA	219	Too-Many
TCGA.AA.3984	21	10971565	48084819	12281	-0.0071	NEUTRAL	NA	219	Too-Many
TCGA.AA.3986	21	10971565	48084819	12285	0.0133	NEUTRAL	NA	219	Too-Many
TCGA.AA.3989	21	10971565	48084819	12282	-0.2645	NEUTRAL	NA	219	Too-Many
TCGA.AA.3994	21	10971565	48084819	12267	-0.0013	NEUTRAL	NA	219	Too-Many
TCGA.AA.A01P	21	10971565	48084819	12269	0.0245	NEUTRAL	NA	219	Too-Many
TCGA.AA.A01R	21	10971565	48084819	12278	-0.0041	NEUTRAL	NA	219	Too-Many
TCGA.AA.A01T	21	10971565	48084819	12280	0.0262	NEUTRAL	NA	219	Too-Many
TCGA.AA.A01V	21	10971565	48084819	12279	0.0077	NEUTRAL	NA	219	Too-Many
TCGA.AA.A01X	21	10971565	48084819	12270	0.0067	NEUTRAL	NA	219	Too-Many
TCGA.AA.A022	21	10971565	48084819	12263	-0.464	NEUTRAL	NA	219	Too-Many
TCGA.AA.A02O	21	10971565	48084819	12280	-0.0054	NEUTRAL	NA	219	Too-Many
TCGA.AA.A02Y	21	10971565	48084819	12271	-0.0029	NEUTRAL	NA	219	Too-Many
TCGA.AA.A03F	21	10971565	48084819	12275	0.0004	NEUTRAL	NA	219	Too-Many
TCGA.AA.A03J	21	10971565	48084819	12040	-0.0059	NEUTRAL	NA	219	Too-Many
TCGA.AD.5900	21	10971565	48084819	12275	-0.003	NEUTRAL	NA	219	Too-Many
TCGA.AD.6548	21	10971565	48084819	12236	-0.01	NEUTRAL	NA	219	Too-Many
TCGA.AD.6890	21	10971565	48084819	12267	-0.3714	NEUTRAL	NA	219	Too-Many
TCGA.AD.6895	21	10971565	48084819	12261	-0.0011	NEUTRAL	NA	219	Too-Many
TCGA.AD.6899	21	10971565	48084819	12246	0.072	NEUTRAL	NA	219	Too-Many
TCGA.AD.6963	21	10971565	48084819	12268	-0.0234	NEUTRAL	NA	219	Too-Many
TCGA.AD.A5EK	21	10971565	48084819	12200	-0.0544	NEUTRAL	NA	219	Too-Many
TCGA.AF.2687	21	10971565	48084819	12251	-0.1696	NEUTRAL	NA	219	Too-Many
TCGA.AF.2689	21	10971565	48084819	12275	-0.391	NEUTRAL	NA	219	Too-Many
TCGA.AF.2690	21	10971565	48084819	12289	-0.2345	NEUTRAL	NA	219	Too-Many
TCGA.AF.2691	21	10971565	48084819	12281	-0.0406	NEUTRAL	NA	219	Too-Many
TCGA.AF.3911	21	10971565	48084819	12287	0.003	NEUTRAL	NA	219	Too-Many
TCGA.AF.4110	21	10971565	48084819	12279	-0.4936	NEUTRAL	NA	219	Too-Many
TCGA.AF.5654	21	10971565	48084819	12257	0.0123	NEUTRAL	NA	219	Too-Many
TCGA.AF.A56N	21	10971565	48084819	12269	-0.1349	NEUTRAL	NA	219	Too-Many
TCGA.AG.3574	21	10971565	48084819	12289	-0.0859	NEUTRAL	NA	219	Too-Many
TCGA.AG.3580	21	10971565	48084819	12290	0.0057	NEUTRAL	NA	219	Too-Many
TCGA.AG.3581	21	10971565	48084819	12287	-0.1665	NEUTRAL	NA	219	Too-Many
TCGA.AG.3583	21	10971565	48084819	11961	0.0055	NEUTRAL	NA	219	Too-Many
TCGA.AG.3591	21	10971565	48084819	12290	-0.1648	NEUTRAL	NA	219	Too-Many
TCGA.AG.3594	21	10971565	48084819	12292	0.0022	NEUTRAL	NA	219	Too-Many
TCGA.AG.3598	21	10971565	48084819	12258	0.0061	NEUTRAL	NA	219	Too-Many
TCGA.AG.3612	21	10971565	48084819	12212	0.1064	NEUTRAL	NA	219	Too-Many
TCGA.AG.3725	21	10971565	48084819	12273	-0.4053	NEUTRAL	NA	219	Too-Many
TCGA.AG.3731	21	10971565	48084819	12291	0.0251	NEUTRAL	NA	219	Too-Many
TCGA.AG.3885	21	10971565	48084819	12286	0.3046	NEUTRAL	NA	219	Too-Many
TCGA.AG.3887	21	10971565	48084819	12232	0.0017	NEUTRAL	NA	219	Too-Many
TCGA.AG.3892	21	10971565	48084819	12248	0.006	NEUTRAL	NA	219	Too-Many
TCGA.AG.3893	21	10971565	48084819	12207	0.0154	NEUTRAL	NA	219	Too-Many
TCGA.AG.3896	21	10971565	48084819	12255	-0.0173	NEUTRAL	NA	219	Too-Many
TCGA.AG.3898	21	10971565	48084819	12238	-0.2475	NEUTRAL	NA	219	Too-Many
TCGA.AG.3901	21	10971565	48084819	12257	0.0262	NEUTRAL	NA	219	Too-Many
TCGA.AG.3902	21	10971565	48084819	12255	-0.0028	NEUTRAL	NA	219	Too-Many
TCGA.AG.4008	21	10971565	48084819	12196	-0.2087	NEUTRAL	NA	219	Too-Many
TCGA.AG.4022	21	10971565	48084819	12286	-0.0576	NEUTRAL	NA	219	Too-Many
TCGA.AH.6544	21	10971565	48084819	12253	-0.064	NEUTRAL	NA	219	Too-Many
TCGA.AH.6547	21	10971565	48084819	12260	-0.002	NEUTRAL	NA	219	Too-Many
TCGA.AH.6643	21	10971565	48084819	12255	-0.2619	NEUTRAL	NA	219	Too-Many
TCGA.AH.6903	21	10971565	48084819	12256	-0.0013	NEUTRAL	NA	219	Too-Many
TCGA.AU.6004	21	10971565	48084819	12206	0.0054	NEUTRAL	NA	219	Too-Many
TCGA.AY.4070	21	10971565	48084819	12214	-0.1149	NEUTRAL	NA	219	Too-Many
TCGA.AY.6197	21	10971565	48084819	11999	0.0043	NEUTRAL	NA	219	Too-Many
TCGA.AY.6386	21	10971565	48084819	12278	0.0018	NEUTRAL	NA	219	Too-Many
TCGA.AY.A69D	21	10971565	48084819	12252	-0.3321	NEUTRAL	NA	219	Too-Many
TCGA.AY.A8YK	21	10971565	48084819	12282	-0.0789	NEUTRAL	NA	219	Too-Many
TCGA.AZ.4315	21	10971565	48084819	12264	-0.0012	NEUTRAL	NA	219	Too-Many
TCGA.AZ.4323	21	10971565	48084819	12240	-0.0358	NEUTRAL	NA	219	Too-Many
TCGA.AZ.4614	21	10971565	48084819	12147	0.012	NEUTRAL	NA	219	Too-Many
TCGA.AZ.4615	21	10971565	48084819	12274	0.025	NEUTRAL	NA	219	Too-Many
TCGA.AZ.4682	21	10971565	48084819	12278	-0.0101	NEUTRAL	NA	219	Too-Many
TCGA.AZ.5403	21	10971565	48084819	12273	-0.0065	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6598	21	10971565	48084819	12288	-0.031	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6599	21	10971565	48084819	12290	0	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6600	21	10971565	48084819	12269	-0.108	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6601	21	10971565	48084819	12288	0.0026	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6603	21	10971565	48084819	12252	-0.2067	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6605	21	10971565	48084819	12241	-0.1656	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6606	21	10971565	48084819	12240	-0.0159	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6607	21	10971565	48084819	12246	-0.3041	NEUTRAL	NA	219	Too-Many
TCGA.AZ.6608	21	10971565	48084819	12240	0.2755	NEUTRAL	NA	219	Too-Many
TCGA.BM.6198	21	10971565	48084819	12289	-0.07795	NEUTRAL	NA	219	Too-Many
TCGA.CA.5254	21	10971565	48084819	12241	-0.4747	NEUTRAL	NA	219	Too-Many
TCGA.CA.5255	21	10971565	48084819	12240	0.109	NEUTRAL	NA	219	Too-Many
TCGA.CA.5256	21	10971565	48084819	12195	-0.317	NEUTRAL	NA	219	Too-Many
TCGA.CA.5796	21	10971565	48084819	12271	-0.012	NEUTRAL	NA	219	Too-Many
TCGA.CA.6715	21	10971565	48084819	12232	-0.0011	NEUTRAL	NA	219	Too-Many
TCGA.CA.6716	21	10971565	48084819	12254	-0.2768	NEUTRAL	NA	219	Too-Many
TCGA.CA.6717	21	10971565	48084819	12233	-0.0002	NEUTRAL	NA	219	Too-Many
TCGA.CA.6718	21	10971565	48084819	12233	-0.0557	NEUTRAL	NA	219	Too-Many
TCGA.CI.6619	21	10971565	48084819	12252	0.0029	NEUTRAL	NA	219	Too-Many
TCGA.CI.6620	21	10971565	48084819	12253	-0.0073	NEUTRAL	NA	219	Too-Many
TCGA.CI.6622	21	10971565	48084819	12250	0.0003	NEUTRAL	NA	219	Too-Many
TCGA.CI.6623	21	10971565	48084819	12260	0.0225	NEUTRAL	NA	219	Too-Many
TCGA.CI.6624	21	10971565	48084819	12249	-0.1417	NEUTRAL	NA	219	Too-Many
TCGA.CK.4947	21	10971565	48084819	12277	0.0019	NEUTRAL	NA	219	Too-Many
TCGA.CK.4950	21	10971565	48084819	12172	-0.0092	NEUTRAL	NA	219	Too-Many
TCGA.CK.4951	21	10971565	48084819	12232	0.0126	NEUTRAL	NA	219	Too-Many
TCGA.CK.5912	21	10971565	48084819	12238	-0.1773	NEUTRAL	NA	219	Too-Many
TCGA.CK.5913	21	10971565	48084819	12277	-0.0049	NEUTRAL	NA	219	Too-Many
TCGA.CK.5915	21	10971565	48084819	12275	0.1193	NEUTRAL	NA	219	Too-Many
TCGA.CK.5916	21	10971565	48084819	12263	-0.006	NEUTRAL	NA	219	Too-Many
TCGA.CK.6746	21	10971565	48084819	12241	-0.0053	NEUTRAL	NA	219	Too-Many
TCGA.CK.6747	21	10971565	48084819	12239	0.0045	NEUTRAL	NA	219	Too-Many
TCGA.CK.6751	21	10971565	48084819	12206	-0.0032	NEUTRAL	NA	219	Too-Many
TCGA.CL.4957	21	10971565	48084819	12290	-0.3957	NEUTRAL	NA	219	Too-Many
TCGA.CL.5917	21	10971565	48084819	12261	-0.015	NEUTRAL	NA	219	Too-Many
TCGA.CL.5918	21	10971565	48084819	12259	-0.059	NEUTRAL	NA	219	Too-Many
TCGA.CM.4743	21	10971565	48084819	12283	0.0154	NEUTRAL	NA	219	Too-Many
TCGA.CM.4747	21	10971565	48084819	12276	0.0032	NEUTRAL	NA	219	Too-Many
TCGA.CM.4748	21	10971565	48084819	12276	-0.0001	NEUTRAL	NA	219	Too-Many
TCGA.CM.4752	21	10971565	48084819	12278	-0.1171	NEUTRAL	NA	219	Too-Many
TCGA.CM.5341	21	10971565	48084819	12278	0.0196	NEUTRAL	NA	219	Too-Many
TCGA.CM.5344	21	10971565	48084819	12280	-0.2383	NEUTRAL	NA	219	Too-Many
TCGA.CM.5349	21	10971565	48084819	12271	-0.009	NEUTRAL	NA	219	Too-Many
TCGA.CM.5860	21	10971565	48084819	12271	-0.4089	NEUTRAL	NA	219	Too-Many
TCGA.CM.5861	21	10971565	48084819	12281	-0.0074	NEUTRAL	NA	219	Too-Many
TCGA.CM.5862	21	10971565	48084819	12275	-0.1917	NEUTRAL	NA	219	Too-Many
TCGA.CM.5863	21	10971565	48084819	12255	-0.0386	NEUTRAL	NA	219	Too-Many
TCGA.CM.5868	21	10971565	48084819	12281	0.1757	NEUTRAL	NA	219	Too-Many
TCGA.CM.6162	21	10971565	48084819	12251	-0.0036	NEUTRAL	NA	219	Too-Many
TCGA.CM.6163	21	10971565	48084819	12251	-0.3856	NEUTRAL	NA	219	Too-Many
TCGA.CM.6164	21	10971565	48084819	12276	-0.4731	NEUTRAL	NA	219	Too-Many
TCGA.CM.6166	21	10971565	48084819	12287	-0.0178	NEUTRAL	NA	219	Too-Many
TCGA.CM.6167	21	10971565	48084819	12275	-0.0104	NEUTRAL	NA	219	Too-Many
TCGA.CM.6168	21	10971565	48084819	12285	-0.0044	NEUTRAL	NA	219	Too-Many
TCGA.CM.6169	21	10971565	48084819	12204	0.0509	NEUTRAL	NA	219	Too-Many
TCGA.CM.6171	21	10971565	48084819	12290	0.0049	NEUTRAL	NA	219	Too-Many
TCGA.CM.6172	21	10971565	48084819	12288	-0.0045	NEUTRAL	NA	219	Too-Many
TCGA.CM.6674	21	10971565	48084819	12245	-0.0019	NEUTRAL	NA	219	Too-Many
TCGA.CM.6678	21	10971565	48084819	12244	-0.1459	NEUTRAL	NA	219	Too-Many
TCGA.CM.6679	21	10971565	48084819	12240	-0.00055	NEUTRAL	NA	219	Too-Many
TCGA.CM.6680	21	10971565	48084819	12257	-0.0654	NEUTRAL	NA	219	Too-Many
TCGA.D5.5537	21	10971565	48084819	12255	-0.3793	NEUTRAL	NA	219	Too-Many
TCGA.D5.5538	21	10971565	48084819	12277	-0.0232	NEUTRAL	NA	219	Too-Many
TCGA.D5.5540	21	10971565	48084819	12286	-0.002	NEUTRAL	NA	219	Too-Many
TCGA.D5.6529	21	10971565	48084819	12286	0.0101	NEUTRAL	NA	219	Too-Many
TCGA.D5.6530	21	10971565	48084819	12287	0.009	NEUTRAL	NA	219	Too-Many
TCGA.D5.6531	21	10971565	48084819	12283	-0.2229	NEUTRAL	NA	219	Too-Many
TCGA.D5.6532	21	10971565	48084819	12282	-0.007	NEUTRAL	NA	219	Too-Many
TCGA.D5.6534	21	10971565	48084819	12250	-0.0062	NEUTRAL	NA	219	Too-Many
TCGA.D5.6535	21	10971565	48084819	12286	-0.0003	NEUTRAL	NA	219	Too-Many
TCGA.D5.6536	21	10971565	48084819	12284	0.0159	NEUTRAL	NA	219	Too-Many
TCGA.D5.6537	21	10971565	48084819	12209	-0.008	NEUTRAL	NA	219	Too-Many
TCGA.D5.6538	21	10971565	48084819	12278	-0.0259	NEUTRAL	NA	219	Too-Many
TCGA.D5.6539	21	10971565	48084819	12262	-0.0203	NEUTRAL	NA	219	Too-Many
TCGA.D5.6540	21	10971565	48084819	12259	-0.0056	NEUTRAL	NA	219	Too-Many
TCGA.D5.6541	21	10971565	48084819	12283	0.0026	NEUTRAL	NA	219	Too-Many
TCGA.D5.6898	21	10971565	48084819	12260	0.1748	NEUTRAL	NA	219	Too-Many
TCGA.D5.6920	21	10971565	48084819	12253	-0.0023	NEUTRAL	NA	219	Too-Many
TCGA.D5.6927	21	10971565	48084819	12259	0.0003	NEUTRAL	NA	219	Too-Many
TCGA.D5.6928	21	10971565	48084819	12257	-0.0101	NEUTRAL	NA	219	Too-Many
TCGA.D5.6929	21	10971565	48084819	12259	-0.0413	NEUTRAL	NA	219	Too-Many
TCGA.D5.6930	21	10971565	48084819	12257	-0.0037	NEUTRAL	NA	219	Too-Many
TCGA.D5.7000	21	10971565	48084819	12237	-0.0014	NEUTRAL	NA	219	Too-Many
TCGA.DC.5337	21	10971565	48084819	12242	-0.0076	NEUTRAL	NA	219	Too-Many
TCGA.DC.5869	21	10971565	48084819	12257	-0.0236	NEUTRAL	NA	219	Too-Many
TCGA.DC.6154	21	10971565	48084819	12258	-0.0036	NEUTRAL	NA	219	Too-Many
TCGA.DC.6155	21	10971565	48084819	12240	-0.4024	NEUTRAL	NA	219	Too-Many
TCGA.DC.6681	21	10971565	48084819	12257	-0.0151	NEUTRAL	NA	219	Too-Many
TCGA.DC.6682	21	10971565	48084819	12260	-0.1603	NEUTRAL	NA	219	Too-Many
TCGA.DC.6683	21	10971565	48084819	12252	-0.1895	NEUTRAL	NA	219	Too-Many
TCGA.DM.A0X9	21	10971565	48084819	12274	-0.0053	NEUTRAL	NA	219	Too-Many
TCGA.DM.A0XF	21	10971565	48084819	12280	-0.0263	NEUTRAL	NA	219	Too-Many
TCGA.DM.A1D4	21	10971565	48084819	12283	-0.0052	NEUTRAL	NA	219	Too-Many
TCGA.DM.A1D8	21	10971565	48084819	12257	-0.054	NEUTRAL	NA	219	Too-Many
TCGA.DM.A1D9	21	10971565	48084819	12270	-0.4674	NEUTRAL	NA	219	Too-Many
TCGA.DM.A1DA	21	10971565	48084819	12282	-0.1513	NEUTRAL	NA	219	Too-Many
TCGA.DM.A1DB	21	10971565	48084819	12280	-0.0238	NEUTRAL	NA	219	Too-Many
TCGA.DM.A280	21	10971565	48084819	12252	-0.0022	NEUTRAL	NA	219	Too-Many
TCGA.DM.A285	21	10971565	48084819	12239	0.1125	NEUTRAL	NA	219	Too-Many
TCGA.DM.A288	21	10971565	48084819	12243	0.0887	NEUTRAL	NA	219	Too-Many
TCGA.DM.A28A	21	10971565	48084819	12257	-0.1614	NEUTRAL	NA	219	Too-Many
TCGA.DM.A28C	21	10971565	48084819	12259	0.0119	NEUTRAL	NA	219	Too-Many
TCGA.DM.A28E	21	10971565	48084819	12245	-0.0133	NEUTRAL	NA	219	Too-Many
TCGA.DM.A28G	21	10971565	48084819	12258	-0.001	NEUTRAL	NA	219	Too-Many
TCGA.DT.5265	21	10971565	48084819	12255	-0.0365	NEUTRAL	NA	219	Too-Many
TCGA.DY.A0XA	21	10971565	48084819	12267	-0.3055	NEUTRAL	NA	219	Too-Many
TCGA.DY.A1DF	21	10971565	48084819	12278	-0.0327	NEUTRAL	NA	219	Too-Many
TCGA.EI.6506	21	10971565	48084819	12254	-0.1767	NEUTRAL	NA	219	Too-Many
TCGA.EI.6507	21	10971565	48084819	12281	-0.0003	NEUTRAL	NA	219	Too-Many
TCGA.EI.6509	21	10971565	48084819	12287	0.0227	NEUTRAL	NA	219	Too-Many
TCGA.EI.6510	21	10971565	48084819	12252	-0.0296	NEUTRAL	NA	219	Too-Many
TCGA.EI.6513	21	10971565	48084819	12291	-0.2563	NEUTRAL	NA	219	Too-Many
TCGA.EI.6514	21	10971565	48084819	12274	-0.0824	NEUTRAL	NA	219	Too-Many
TCGA.EI.6881	21	10971565	48084819	12256	-0.0953	NEUTRAL	NA	219	Too-Many
TCGA.EI.6882	21	10971565	48084819	12259	-0.0047	NEUTRAL	NA	219	Too-Many
TCGA.EI.6883	21	10971565	48084819	12250	-0.0072	NEUTRAL	NA	219	Too-Many
TCGA.EI.6884	21	10971565	48084819	12247	0.005	NEUTRAL	NA	219	Too-Many
TCGA.EI.6917	21	10971565	48084819	12250	0.0019	NEUTRAL	NA	219	Too-Many
TCGA.EI.7002	21	10971565	48084819	12261	-0.4758	NEUTRAL	NA	219	Too-Many
TCGA.EI.7004	21	10971565	48084819	12258	-0.3773	NEUTRAL	NA	219	Too-Many
TCGA.F4.6460	21	10971565	48084819	12288	-0.3091	NEUTRAL	NA	219	Too-Many
TCGA.F4.6463	21	10971565	48084819	12280	0	NEUTRAL	NA	219	Too-Many
TCGA.F4.6570	21	10971565	48084819	12290	-0.0077	NEUTRAL	NA	219	Too-Many
TCGA.F4.6703	21	10971565	48084819	12256	-0.1239	NEUTRAL	NA	219	Too-Many
TCGA.F4.6704	21	10971565	48084819	12256	-0.1688	NEUTRAL	NA	219	Too-Many
TCGA.F4.6805	21	10971565	48084819	12251	-0.0051	NEUTRAL	NA	219	Too-Many
TCGA.F4.6806	21	10971565	48084819	12236	-0.2195	NEUTRAL	NA	219	Too-Many
TCGA.F4.6807	21	10971565	48084819	12240	-0.4418	NEUTRAL	NA	219	Too-Many
TCGA.F4.6808	21	10971565	48084819	12255	-0.2754	NEUTRAL	NA	219	Too-Many
TCGA.F4.6809	21	10971565	48084819	12250	0.0087	NEUTRAL	NA	219	Too-Many
TCGA.F4.6854	21	10971565	48084819	12254	-0.1457	NEUTRAL	NA	219	Too-Many
TCGA.F4.6855	21	10971565	48084819	12251	-0.3953	NEUTRAL	NA	219	Too-Many
TCGA.F4.6856	21	10971565	48084819	12261	-0.0068	NEUTRAL	NA	219	Too-Many
TCGA.F5.6464	21	10971565	48084819	12289	-0.0149	NEUTRAL	NA	219	Too-Many
TCGA.F5.6465	21	10971565	48084819	12289	-0.0109	NEUTRAL	NA	219	Too-Many
TCGA.F5.6702	21	10971565	48084819	12234	-0.0181	NEUTRAL	NA	219	Too-Many
TCGA.F5.6812	21	10971565	48084819	12254	-0.1198	NEUTRAL	NA	219	Too-Many
TCGA.F5.6813	21	10971565	48084819	12258	0	NEUTRAL	NA	219	Too-Many
TCGA.F5.6814	21	10971565	48084819	12258	-0.0917	NEUTRAL	NA	219	Too-Many
TCGA.F5.6861	21	10971565	48084819	12251	-0.0046	NEUTRAL	NA	219	Too-Many
TCGA.F5.6864	21	10971565	48084819	12258	0.0016	NEUTRAL	NA	219	Too-Many
TCGA.G4.6293	21	10971565	48084819	12269	-0.0347	NEUTRAL	NA	219	Too-Many
TCGA.G4.6294	21	10971565	48084819	12286	-0.0131	NEUTRAL	NA	219	Too-Many
TCGA.G4.6295	21	10971565	48084819	12288	-0.3963	NEUTRAL	NA	219	Too-Many
TCGA.G4.6297	21	10971565	48084819	12284	0.2432	NEUTRAL	NA	219	Too-Many
TCGA.G4.6298	21	10971565	48084819	12284	-0.0021	NEUTRAL	NA	219	Too-Many
TCGA.G4.6302	21	10971565	48084819	12283	-0.0019	NEUTRAL	NA	219	Too-Many
TCGA.G4.6303	21	10971565	48084819	12289	-0.0313	NEUTRAL	NA	219	Too-Many
TCGA.G4.6304	21	10971565	48084819	12257	0.0023	NEUTRAL	NA	219	Too-Many
TCGA.G4.6306	21	10971565	48084819	12284	-0.0128	NEUTRAL	NA	219	Too-Many
TCGA.G4.6307	21	10971565	48084819	12285	-0.039	NEUTRAL	NA	219	Too-Many
TCGA.G4.6309	21	10971565	48084819	12252	-0.0089	NEUTRAL	NA	219	Too-Many
TCGA.G4.6310	21	10971565	48084819	12279	0.0107	NEUTRAL	NA	219	Too-Many
TCGA.G4.6311	21	10971565	48084819	12281	0	NEUTRAL	NA	219	Too-Many
TCGA.G4.6314	21	10971565	48084819	12287	-0.3288	NEUTRAL	NA	219	Too-Many
TCGA.G4.6315	21	10971565	48084819	12287	-0.4344	NEUTRAL	NA	219	Too-Many
TCGA.G4.6317	21	10971565	48084819	12288	-0.3506	NEUTRAL	NA	219	Too-Many
TCGA.G4.6320	21	10971565	48084819	12288	-0.1207	NEUTRAL	NA	219	Too-Many
TCGA.G4.6321	21	10971565	48084819	12286	0.0013	NEUTRAL	NA	219	Too-Many
TCGA.G4.6322	21	10971565	48084819	12288	0.0035	NEUTRAL	NA	219	Too-Many
TCGA.G4.6323	21	10971565	48084819	12285	0.0001	NEUTRAL	NA	219	Too-Many
TCGA.G4.6586	21	10971565	48084819	12287	-0.0014	NEUTRAL	NA	219	Too-Many
TCGA.G4.6588	21	10971565	48084819	12287	0.0076	NEUTRAL	NA	219	Too-Many
TCGA.G4.6625	21	10971565	48084819	12286	-0.1294	NEUTRAL	NA	219	Too-Many
TCGA.G4.6626	21	10971565	48084819	12289	-0.3951	NEUTRAL	NA	219	Too-Many
TCGA.G4.6628	21	10971565	48084819	12250	-0.004	NEUTRAL	NA	219	Too-Many
TCGA.G5.6233	21	10971565	48084819	12287	-0.1275	NEUTRAL	NA	219	Too-Many
TCGA.G5.6235	21	10971565	48084819	12291	-0.0139	NEUTRAL	NA	219	Too-Many
TCGA.G5.6572	21	10971565	48084819	12247	-0.0446	NEUTRAL	NA	219	Too-Many
TCGA.G5.6641	21	10971565	48084819	12252	-0.2379	NEUTRAL	NA	219	Too-Many
TCGA.NH.A50T	21	10971565	48084819	12192	-0.3524	NEUTRAL	NA	219	Too-Many
TCGA.NH.A50U	21	10971565	48084819	12277	-0.0488	NEUTRAL	NA	219	Too-Many
TCGA.NH.A50V	21	10971565	48084819	12199	0.3129	NEUTRAL	NA	219	Too-Many
TCGA.NH.A5IV	21	10971565	48084819	12250	-0.0085	NEUTRAL	NA	219	Too-Many
TCGA.NH.A6GB	21	10971565	48084819	12275	-0.0311	NEUTRAL	NA	219	Too-Many
TCGA.NH.A6GC	21	10971565	48084819	12278	-0.0188	NEUTRAL	NA	219	Too-Many
TCGA.NH.A8F8	21	10971565	48084819	12285	-0.0149	NEUTRAL	NA	219	Too-Many
TCGA.QG.A5YX	21	10971565	48084819	12177	-0.044	NEUTRAL	NA	219	Too-Many
TCGA.QG.A5Z1	21	10971565	48084819	12181	-0.0185	NEUTRAL	NA	219	Too-Many
TCGA.QG.A5Z2	21	10971565	48084819	12187	-0.0086	NEUTRAL	NA	219	Too-Many
TCGA.WS.AB45	21	10971565	48084819	12285	-0.0129	NEUTRAL	NA	219	Too-Many
TCGA.AA.A02K.01A	21	11098610	35239487	671	0.0342	NEUTRAL	NA	95	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CRYZL1,CXADR,CYYR1,DNAJC28,DONSON,EVA1C,GABPA,GART,GRIK1,HSPA13,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,OLIG1,OLIG2,PAXBP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TMPRSS15,URB1,USP16,USP25"
TCGA.DC.6160.01A	21	13904399	46908563	2009	0.0121	NEUTRAL	NA	199	Too-Many
TCGA.AH.6897	21	14369206	14793504	22	-0.5118	NEUTRAL	NA	0	None
TCGA.DM.A1HB	21	14369206	19336338	1397	-0.0162	NEUTRAL	NA	12	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,USP25"
TCGA.A6.3809	21	14369206	48084819	11237	-0.0342	NEUTRAL	NA	213	Too-Many
TCGA.A6.5659	21	14369206	48084819	11216	-0.308	NEUTRAL	NA	213	Too-Many
TCGA.A6.6654	21	14369206	48084819	12247	-0.0801	NEUTRAL	NA	213	Too-Many
TCGA.A6.6782	21	14369206	48084819	12225	-0.2105	NEUTRAL	NA	213	Too-Many
TCGA.AD.6888	21	14369206	48084819	12267	-0.0121	NEUTRAL	NA	213	Too-Many
TCGA.AG.3878	21	14369206	48084819	12286	0.0081	NEUTRAL	NA	213	Too-Many
TCGA.AZ.4308	21	14369206	48084819	12279	-0.004	NEUTRAL	NA	213	Too-Many
TCGA.F4.6461	21	14369206	48084819	12251	0.0016	NEUTRAL	NA	213	Too-Many
TCGA.F4.6569	21	14595263	36190599	7631	0.0155	NEUTRAL	NA	101	Too-Many
TCGA.CM.6676	21	14603576	48084819	12233	-0.0204	NEUTRAL	NA	213	Too-Many
TCGA.A6.5665	21	14635152	14822341	28	0.0051	NEUTRAL	NA	0	None
TCGA.AA.3522	21	14642463	16241909	374	0.0341	NEUTRAL	NA	6	"HSPA13,LIPI,LOC388813,POTED,RBM11,SAMSN1"
TCGA.G4.6299	21	14642463	20165251	1772	0.3604	NEUTRAL	NA	13	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.A6.5666	21	14665972	48084819	12272	-0.0925	NEUTRAL	NA	213	Too-Many
TCGA.AG.3728	21	14693232	24023239	3198	-0.2769	NEUTRAL	NA	14	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AF.A56K	21	14693232	48084819	12252	-0.4053	NEUTRAL	NA	213	Too-Many
TCGA.DM.A1D0	21	14770131	23642859	3044	-0.0065	NEUTRAL	NA	14	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AH.6897	21	14796634	47416323	12054	-0.0151	NEUTRAL	NA	202	Too-Many
TCGA.CM.6675	21	14916054	48084819	12194	-0.0091	NEUTRAL	NA	213	Too-Many
TCGA.AG.3909.01A	21	14982868	15599163	19	-0.4108	NEUTRAL	NA	3	"LIPI,POTED,RBM11"
TCGA.AA.3930.01A	21	14982868	27096872	170	-0.1263	NEUTRAL	NA	17	"ATP5J,BTG3,C21orf91,CHODL,CXADR,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AG.A02X.01A	21	14982868	48084135	1570	-0.3527	NEUTRAL	NA	213	Too-Many
TCGA.CK.4948.01B	21	14982868	48084135	2005	-0.1354	NEUTRAL	NA	213	Too-Many
TCGA.CM.4744.01A	21	15011789	48084135	2001	-0.4125	NEUTRAL	NA	213	Too-Many
TCGA.AZ.4681	21	15206016	20591560	1914	-0.0107	NEUTRAL	NA	12	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.A6.5665	21	15206016	32907799	6482	-0.2519	NEUTRAL	NA	64	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,RBM11,RWDD2B,SAMSN1,TIAM1,TMPRSS15,USP16,USP25"
TCGA.A6.5661	21	15209348	31848345	6118	0.17	NEUTRAL	NA	41	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,RBM11,RWDD2B,SAMSN1,TMPRSS15,USP16,USP25"
TCGA.AA.3662	21	15292827	48084819	12234	-0.0027	NEUTRAL	NA	212	Too-Many
TCGA.AU.3779	21	15408033	48084819	12227	-0.1752	NEUTRAL	NA	212	Too-Many
TCGA.DC.4745	21	15447211	15628154	65	-0.0359	NEUTRAL	NA	2	"LIPI,RBM11"
TCGA.CM.6161	21	15474152	48084819	12200	-0.0324	NEUTRAL	NA	212	Too-Many
TCGA.DC.6157	21	15474174	19762359	1527	-0.2986	NEUTRAL	NA	12	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.CK.5914.01A	21	15481260	15538629	6	-0.2449	NEUTRAL	NA	1	LIPI
TCGA.A6.3810.01A	21	15481260	47697389	1896	0.0232	NEUTRAL	NA	206	Too-Many
TCGA.AA.A01F.01A	21	15481260	48084135	1488	-0.2715	NEUTRAL	NA	212	Too-Many
TCGA.AA.3509.01A	21	15516896	19687426	103	0.3385	NEUTRAL	NA	12	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AZ.4684.01A	21	15516896	19713678	107	0.279	NEUTRAL	NA	12	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.A6.3808.01A	21	15516896	34707782	569	0.2375	NEUTRAL	NA	81	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HSPA13,HUNK,IFNAR1,IFNAR2,IL10RB,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,OLIG1,OLIG2,PAXBP1,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,URB1,USP16,USP25"
TCGA.AG.A014.01A	21	15535693	18919293	59	-0.4115	NEUTRAL	NA	8	"CXADR,HSPA13,LIPI,LOC388813,NRIP1,RBM11,SAMSN1,USP25"
TCGA.AG.3882	21	15552992	15927690	154	-0.0628	NEUTRAL	NA	4	"HSPA13,LIPI,RBM11,SAMSN1"
TCGA.T9.A92H	21	15554349	15616771	20	0.2582	NEUTRAL	NA	2	"LIPI,RBM11"
TCGA.T9.A92H	21	15660261	19324969	1278	0.0733	NEUTRAL	NA	9	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LOC388813,NRIP1,SAMSN1,USP25"
TCGA.AA.A00D.01A	21	15746028	16338480	11	-0.0126	NEUTRAL	NA	4	"HSPA13,LOC388813,NRIP1,SAMSN1"
TCGA.AG.A00C.01A	21	15746028	18937764	52	-0.2985	NEUTRAL	NA	6	"CXADR,HSPA13,LOC388813,NRIP1,SAMSN1,USP25"
TCGA.AG.3909.01A	21	15746028	18965389	53	0.0367	NEUTRAL	NA	6	"CXADR,HSPA13,LOC388813,NRIP1,SAMSN1,USP25"
TCGA.CK.5914.01A	21	15755327	17912108	54	-0.2098	NEUTRAL	NA	5	"HSPA13,LOC388813,NRIP1,SAMSN1,USP25"
TCGA.A6.2672	21	15859449	32336217	6069	0.1894	NEUTRAL	NA	59	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,RWDD2B,SAMSN1,TMPRSS15,USP16,USP25"
TCGA.AF.6136	21	15890067	17839335	704	-0.278	NEUTRAL	NA	4	"LOC388813,NRIP1,SAMSN1,USP25"
TCGA.AA.A010.01A	21	16015273	27117504	137	0.1537	NEUTRAL	NA	13	"ATP5J,BTG3,C21orf91,CHODL,CXADR,GABPA,JAM2,LOC388813,MRPL39,NCAM2,NRIP1,TMPRSS15,USP25"
TCGA.AA.3522	21	16242576	17386869	391	-0.3104	NEUTRAL	NA	2	"NRIP1,USP25"
TCGA.AY.6196	21	16319918	40467642	8886	-0.1872	NEUTRAL	NA	114	Too-Many
TCGA.AA.A00Z.01A	21	16338480	44845855	25	-0.4859	NEUTRAL	NA	152	Too-Many
TCGA.AG.3605.01A	21	16338480	45725154	37	-0.436	NEUTRAL	NA	165	Too-Many
TCGA.AG.3732	21	16465148	48084819	11803	0.2568	NEUTRAL	NA	206	Too-Many
TCGA.F4.6459	21	16851121	31119453	5305	-0.5004	NEUTRAL	NA	23	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,GRIK1,JAM2,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,RWDD2B,TMPRSS15,USP16,USP25"
TCGA.AA.3870	21	16992119	38784973	7921	-0.0064	NEUTRAL	NA	108	Too-Many
TCGA.AF.2693	21	17086755	48084819	11579	-0.0039	NEUTRAL	NA	206	Too-Many
TCGA.DC.4745	21	17199288	18865819	518	-0.1176	NEUTRAL	NA	1	USP25
TCGA.AG.3882	21	17239730	17344552	21	-0.1113	NEUTRAL	NA	1	USP25
TCGA.AG.3882	21	17368739	17685245	106	0.0099	NEUTRAL	NA	0	None
TCGA.EF.5830	21	17386869	18306249	320	-0.0824	NEUTRAL	NA	0	None
TCGA.AA.3522	21	17389010	21800804	1592	0.0535	NEUTRAL	NA	5	"BTG3,C21orf91,CHODL,CXADR,TMPRSS15"
TCGA.DC.4749	21	17611191	18360333	263	-0.4223	NEUTRAL	NA	0	None
TCGA.AG.3882	21	17701225	17826777	59	0.0419	NEUTRAL	NA	0	None
TCGA.AA.3673	21	17701225	48084819	11415	0.0983	NEUTRAL	NA	205	Too-Many
TCGA.AA.3675	21	17701225	48084819	11414	-0.0011	NEUTRAL	NA	205	Too-Many
TCGA.AG.3882	21	17827788	17841643	6	-0.3648	NEUTRAL	NA	0	None
TCGA.AG.3882	21	17846491	18023204	42	-0.0501	NEUTRAL	NA	0	None
TCGA.AA.A00N.01A	21	17911353	18966384	14	0.3658	NEUTRAL	NA	2	"BTG3,CXADR"
TCGA.DM.A1D7	21	17925370	20551104	978	0.0359	NEUTRAL	NA	5	"BTG3,C21orf91,CHODL,CXADR,TMPRSS15"
TCGA.DM.A0XD	21	17925370	30533958	4728	-0.0187	NEUTRAL	NA	20	"ADAMTS1,ADAMTS5,APP,ATP5J,BTG3,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,JAM2,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,RWDD2B,TMPRSS15,USP16"
TCGA.EF.5830	21	18306820	18563294	72	-0.3654	NEUTRAL	NA	0	None
TCGA.DC.4749	21	18363061	22237120	1446	0.0502	NEUTRAL	NA	5	"BTG3,C21orf91,CHODL,CXADR,TMPRSS15"
TCGA.A6.A56B	21	18363061	34584512	5965	-0.0234	NEUTRAL	NA	71	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,OLIG1,OLIG2,PAXBP1,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,URB1,USP16"
TCGA.AG.3881	21	18402442	48084819	11162	-0.298	NEUTRAL	NA	205	Too-Many
TCGA.EF.5830	21	18580353	26134405	2850	-0.0093	NEUTRAL	NA	6	"BTG3,C21orf91,CHODL,CXADR,NCAM2,TMPRSS15"
TCGA.CK.5914.01A	21	18885403	18966384	9	-0.1203	NEUTRAL	NA	2	"BTG3,CXADR"
TCGA.AG.3882	21	18919751	19660205	312	-0.1327	NEUTRAL	NA	5	"BTG3,C21orf91,CHODL,CXADR,TMPRSS15"
TCGA.AG.A014.01A	21	18924023	19653345	21	-0.0649	NEUTRAL	NA	5	"BTG3,C21orf91,CHODL,CXADR,TMPRSS15"
TCGA.AG.A00C.01A	21	18965389	19642239	14	0.1722	NEUTRAL	NA	5	"BTG3,C21orf91,CHODL,CXADR,TMPRSS15"
TCGA.DM.A1HB	21	19340410	24669260	1949	-0.0668	NEUTRAL	NA	3	"CHODL,NCAM2,TMPRSS15"
TCGA.DC.4745	21	19374321	19535978	90	-0.0906	NEUTRAL	NA	1	CHODL
TCGA.CK.6748	21	19408301	39180651	7274	-0.0487	NEUTRAL	NA	105	Too-Many
TCGA.T9.A92H	21	19410641	48084819	10826	0.0078	NEUTRAL	NA	202	Too-Many
TCGA.DM.A28H	21	19417107	48084819	10802	0.0084	NEUTRAL	NA	202	Too-Many
TCGA.CM.5348	21	19513723	22048976	960	-0.2517	NEUTRAL	NA	2	"CHODL,TMPRSS15"
TCGA.AG.3611.01A	21	19628819	19666867	10	-0.2839	NEUTRAL	NA	2	"CHODL,TMPRSS15"
TCGA.AG.3909.01A	21	19638219	26543052	44	-0.1126	NEUTRAL	NA	3	"CHODL,NCAM2,TMPRSS15"
TCGA.DC.4745	21	19639194	19854215	86	-0.0564	NEUTRAL	NA	2	"CHODL,TMPRSS15"
TCGA.AA.3555	21	19639576	48084819	10720	-0.0053	NEUTRAL	NA	202	Too-Many
TCGA.AD.6965	21	19639576	48084819	10691	-0.1338	NEUTRAL	NA	202	Too-Many
TCGA.AG.A00C.01A	21	19647477	22910126	41	-0.2685	NEUTRAL	NA	2	"NCAM2,TMPRSS15"
TCGA.AG.3611.01A	21	19670002	27852540	62	0.0267	NEUTRAL	NA	8	"APP,ATP5J,CYYR1,GABPA,JAM2,MRPL39,NCAM2,TMPRSS15"
TCGA.CK.5914.01A	21	19713678	26957981	36	-0.2826	NEUTRAL	NA	3	"MRPL39,NCAM2,TMPRSS15"
TCGA.DC.6157	21	19762407	21765268	726	0.0439	NEUTRAL	NA	1	TMPRSS15
TCGA.DC.4745	21	19870297	20309004	185	-0.0563	NEUTRAL	NA	0	None
TCGA.AA.3544	21	19931540	21833182	706	-0.0632	NEUTRAL	NA	0	None
TCGA.G4.6299	21	20172366	23642859	1299	0.0228	NEUTRAL	NA	1	NCAM2
TCGA.AA.3869	21	20222588	26544609	2378	0.0098	NEUTRAL	NA	1	NCAM2
TCGA.DM.A1D7	21	20558643	22790918	803	-0.3057	NEUTRAL	NA	1	NCAM2
TCGA.AA.3526	21	20640956	48077811	10302	0.0086	NEUTRAL	NA	200	Too-Many
TCGA.DM.A28K	21	20690733	21494357	257	-0.0003	NEUTRAL	NA	0	None
TCGA.D5.6932	21	20709595	48084819	10261	0.0562	NEUTRAL	NA	200	Too-Many
TCGA.F5.6810	21	20933343	21163004	67	0.351	NEUTRAL	NA	0	None
TCGA.DC.4745	21	21213674	22034928	301	-0.4298	NEUTRAL	NA	0	None
TCGA.AA.A01Z	21	21310634	21582255	71	-0.0536	NEUTRAL	NA	0	None
TCGA.AA.A01Z	21	21644192	22512343	356	-0.0608	NEUTRAL	NA	1	NCAM2
TCGA.D5.6533	21	21649173	22076518	180	-0.2012	NEUTRAL	NA	0	None
TCGA.AG.4015	21	21728432	21748210	12	-0.3463	NEUTRAL	NA	0	None
TCGA.DC.6157	21	21769692	48084819	9865	-0.0368	NEUTRAL	NA	200	Too-Many
TCGA.AG.4015	21	21787750	23990757	842	-0.5047	NEUTRAL	NA	1	NCAM2
TCGA.AA.3522	21	21802972	24827437	1113	-0.3197	NEUTRAL	NA	1	NCAM2
TCGA.AA.3556	21	21846632	48084819	9874	-0.0405	NEUTRAL	NA	200	Too-Many
TCGA.CM.5348	21	22056026	42731264	8018	0.22	NEUTRAL	NA	120	Too-Many
TCGA.AY.4071	21	22077643	48077811	9755	0.2509	NEUTRAL	NA	200	Too-Many
TCGA.DC.4745	21	22117102	22572303	182	-0.3896	NEUTRAL	NA	1	NCAM2
TCGA.AD.6901	21	22165882	23106995	345	-0.2494	NEUTRAL	NA	1	NCAM2
TCGA.DC.4749	21	22253641	25220119	1087	-0.4514	NEUTRAL	NA	1	NCAM2
TCGA.DC.6158	21	22264995	23565190	501	-0.052	NEUTRAL	NA	1	NCAM2
TCGA.4N.A93T	21	22622665	48084819	9585	-0.0243	NEUTRAL	NA	200	Too-Many
TCGA.D5.6924	21	22810766	25544635	1044	-0.0964	NEUTRAL	NA	1	NCAM2
TCGA.AA.3967.01A	21	22840956	45739902	1228	-0.2567	NEUTRAL	NA	158	Too-Many
TCGA.AA.A02H.01A	21	22881160	27117504	30	-0.2821	NEUTRAL	NA	5	"ATP5J,GABPA,JAM2,MRPL39,NCAM2"
TCGA.AZ.4684.01A	21	22881160	35469071	573	-0.1576	NEUTRAL	NA	81	"ADAMTS1,ADAMTS5,APP,ATP5J,ATP5O,BACH1,C21orf59,C21orf62,CCT8,CLDN17,CLDN8,CRYZL1,CYYR1,DNAJC28,DONSON,EVA1C,GABPA,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC400863,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,MRPS6,N6AMT1,NCAM2,OLIG1,OLIG2,PAXBP1,RWDD2B,SCAF4,SLC5A3,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1,USP16"
TCGA.AA.3509.01A	21	22910126	34038224	361	0.0056	NEUTRAL	NA	62	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,C21orf59,CCT8,CLDN17,CLDN8,CYYR1,EVA1C,GABPA,GRIK1,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,URB1,USP16"
TCGA.AZ.4616	21	23132936	24811196	572	-0.2886	NEUTRAL	NA	0	None
TCGA.A6.2678	21	23205557	48084819	9355	-0.0093	NEUTRAL	NA	199	Too-Many
TCGA.F5.6810	21	23225627	23464847	95	0.3187	NEUTRAL	NA	0	None
TCGA.AA.A01Z	21	23271670	23284266	3	-0.4057	NEUTRAL	NA	0	None
TCGA.AM.5820	21	23285147	42940743	7624	-0.0127	NEUTRAL	NA	122	Too-Many
TCGA.AM.5821	21	23285147	48084819	9290	0.0259	NEUTRAL	NA	199	Too-Many
TCGA.AA.A01Z	21	23347273	23372111	15	-0.0138	NEUTRAL	NA	0	None
TCGA.AA.A01Z	21	23407477	23555613	38	-0.1071	NEUTRAL	NA	0	None
TCGA.DY.A1DC	21	23613101	24084534	159	0.0308	NEUTRAL	NA	0	None
TCGA.DM.A1D0	21	23674286	30470511	2598	-0.0232	NEUTRAL	NA	14	"ADAMTS1,ADAMTS5,APP,ATP5J,CCT8,CYYR1,GABPA,JAM2,LTN1,MAP3K7CL,MRPL39,N6AMT1,RWDD2B,USP16"
TCGA.AY.A71X	21	23674286	48084819	9187	-0.0239	NEUTRAL	NA	199	Too-Many
TCGA.CI.6621	21	23674286	48084819	9180	-0.0938	NEUTRAL	NA	199	Too-Many
TCGA.G4.6299	21	23674286	48084819	9201	-0.0599	NEUTRAL	NA	199	Too-Many
TCGA.DM.A1D7	21	23942712	28681149	1871	-0.3123	NEUTRAL	NA	8	"ADAMTS1,ADAMTS5,APP,ATP5J,CYYR1,GABPA,JAM2,MRPL39"
TCGA.AF.A56L	21	24025850	48084819	9058	0.0571	NEUTRAL	NA	199	Too-Many
TCGA.AG.3728	21	24047695	48084819	9072	-0.2743	NEUTRAL	NA	199	Too-Many
TCGA.DY.A1DC	21	24093216	25464199	534	0.001	NEUTRAL	NA	0	None
TCGA.D5.6931	21	24094853	44210785	7930	0.0063	NEUTRAL	NA	136	Too-Many
TCGA.DC.4745	21	24099330	24708965	200	-0.0773	NEUTRAL	NA	0	None
TCGA.AG.4015	21	24290066	24345234	20	-0.3869	NEUTRAL	NA	0	None
TCGA.AG.4015	21	24479517	24552898	21	-0.3034	NEUTRAL	NA	0	None
TCGA.AA.3544	21	24508453	26450729	785	-0.02	NEUTRAL	NA	0	None
TCGA.F5.6810	21	24521101	27078427	967	0.3092	NEUTRAL	NA	2	"JAM2,MRPL39"
TCGA.AA.3518	21	24531759	24611545	23	-0.5065	NEUTRAL	NA	0	None
TCGA.AA.3518	21	24613161	48084819	8874	0.0075	NEUTRAL	NA	199	Too-Many
TCGA.DM.A1HB	21	24677278	26228924	660	-0.0874	NEUTRAL	NA	0	None
TCGA.DC.4745	21	24711880	26134405	593	-0.4326	NEUTRAL	NA	0	None
TCGA.AA.3522	21	24827742	31758327	2680	0.0232	NEUTRAL	NA	24	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,CCT8,CLDN17,CLDN8,CYYR1,GABPA,GRIK1,JAM2,KRTAP13-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,LTN1,MAP3K7CL,MRPL39,N6AMT1,RWDD2B,USP16"
TCGA.AD.6901	21	24923246	48084819	8754	-0.3082	NEUTRAL	NA	199	Too-Many
TCGA.AG.3742	21	24963905	48084819	8706	-0.0003	NEUTRAL	NA	199	Too-Many
TCGA.DC.4749	21	25227754	27371666	796	-0.0018	NEUTRAL	NA	5	"APP,ATP5J,GABPA,JAM2,MRPL39"
TCGA.AY.5543	21	25296169	48084819	8546	-0.0138	NEUTRAL	NA	199	Too-Many
TCGA.A6.6137	21	25299757	45898368	7954	0.0045	NEUTRAL	NA	160	Too-Many
TCGA.AD.6889	21	25386873	48084819	8561	-0.0217	NEUTRAL	NA	199	Too-Many
TCGA.AG.3882	21	25457674	26067091	224	-0.0456	NEUTRAL	NA	0	None
TCGA.DY.A1DC	21	25481692	28282659	1068	-0.0283	NEUTRAL	NA	7	"ADAMTS1,APP,ATP5J,CYYR1,GABPA,JAM2,MRPL39"
TCGA.F5.6863	21	25523349	36107864	3798	-0.3322	NEUTRAL	NA	86	"ADAMTS1,ADAMTS5,APP,ATP5J,ATP5O,BACH1,C21orf140,C21orf59,C21orf62,CCT8,CLDN17,CLDN8,CLIC6,CRYZL1,CYYR1,DNAJC28,DONSON,EVA1C,GABPA,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,JAM2,KCNE1,KCNE2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC400863,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,MRPS6,N6AMT1,OLIG1,OLIG2,PAXBP1,RCAN1,RWDD2B,SCAF4,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1,USP16"
TCGA.DC.6158	21	25536090	25545699	9	0.1585	NEUTRAL	NA	0	None
TCGA.AG.4015	21	25621895	26565063	332	-0.5084	NEUTRAL	NA	0	None
TCGA.AA.A01Z	21	25669735	26548609	316	-0.1272	NEUTRAL	NA	0	None
TCGA.DC.6158	21	25742276	26070726	116	-0.0576	NEUTRAL	NA	0	None
TCGA.D5.6924	21	25836504	48084819	8378	-0.0723	NEUTRAL	NA	199	Too-Many
TCGA.DC.4745	21	26140727	26281996	77	-0.3808	NEUTRAL	NA	0	None
TCGA.EF.5830	21	26140727	29978634	1494	-0.0224	NEUTRAL	NA	8	"ADAMTS1,ADAMTS5,APP,ATP5J,CYYR1,GABPA,JAM2,MRPL39"
TCGA.F5.6571	21	26198456	48084819	8204	-0.1974	NEUTRAL	NA	199	Too-Many
TCGA.A6.2686	21	26204227	41610485	5867	-0.3702	NEUTRAL	NA	116	Too-Many
TCGA.DM.A1HB	21	26237026	48084819	8044	0.0288	NEUTRAL	NA	199	Too-Many
TCGA.D5.6533	21	26358024	26674475	91	-0.1305	NEUTRAL	NA	0	None
TCGA.DC.4745	21	26400211	26649311	79	-0.3947	NEUTRAL	NA	0	None
TCGA.AA.3869	21	26548609	27306378	226	0.3445	NEUTRAL	NA	5	"APP,ATP5J,GABPA,JAM2,MRPL39"
TCGA.AG.3882	21	26662735	26908383	64	-0.1108	NEUTRAL	NA	0	None
TCGA.DC.4745	21	26703774	27240883	154	-0.17	NEUTRAL	NA	4	"ATP5J,GABPA,JAM2,MRPL39"
TCGA.NH.A6GA	21	26729570	48084819	8056	-0.3989	NEUTRAL	NA	199	Too-Many
TCGA.AZ.4681	21	26798088	36658376	3597	-0.0101	NEUTRAL	NA	87	"ADAMTS1,ADAMTS5,APP,ATP5J,ATP5O,BACH1,C21orf140,C21orf59,C21orf62,CCT8,CLDN17,CLDN8,CLIC6,CRYZL1,CYYR1,DNAJC28,DONSON,EVA1C,GABPA,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,JAM2,KCNE1,KCNE2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC400863,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,MRPS6,N6AMT1,OLIG1,OLIG2,PAXBP1,RCAN1,RUNX1,RWDD2B,SCAF4,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1,USP16"
TCGA.A6.5664	21	26826122	48084819	8020	-0.0305	NEUTRAL	NA	199	Too-Many
TCGA.AA.A00N.01A	21	26946227	27012070	13	-0.2133	NEUTRAL	NA	2	"JAM2,MRPL39"
TCGA.AG.A00C.01A	21	26946227	27084577	20	0.1438	NEUTRAL	NA	2	"JAM2,MRPL39"
TCGA.AG.A014.01A	21	26946227	48084135	1432	-0.0628	NEUTRAL	NA	199	Too-Many
TCGA.AG.3882	21	26956747	27278997	102	-0.1236	NEUTRAL	NA	5	"APP,ATP5J,GABPA,JAM2,MRPL39"
TCGA.AA.A01Z	21	27058388	28200071	495	-0.0955	NEUTRAL	NA	5	"APP,ATP5J,CYYR1,GABPA,JAM2"
TCGA.AF.3914.01A	21	27078274	34911460	376	-0.0822	NEUTRAL	NA	71	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,C21orf59,C21orf62,CCT8,CLDN17,CLDN8,CYYR1,DNAJC28,EVA1C,GABPA,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,N6AMT1,OLIG1,OLIG2,PAXBP1,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1,USP16"
TCGA.F5.6810	21	27103613	28033542	384	0.322	NEUTRAL	NA	4	"APP,ATP5J,CYYR1,GABPA"
TCGA.CK.5914.01A	21	27107168	27945137	32	-0.0583	NEUTRAL	NA	4	"APP,ATP5J,CYYR1,GABPA"
TCGA.AA.A02H.01A	21	27121290	32508201	176	0.3061	NEUTRAL	NA	48	"ADAMTS1,ADAMTS5,APP,BACH1,CCT8,CLDN17,CLDN8,CYYR1,GABPA,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,N6AMT1,RWDD2B,TIAM1,USP16"
TCGA.AA.A00A.01A	21	27141298	28337589	38	0.1478	NEUTRAL	NA	5	"ADAMTS1,ADAMTS5,APP,CYYR1,GABPA"
TCGA.AA.3930.01A	21	27141298	34007088	308	0.0448	NEUTRAL	NA	58	"ADAMTS1,ADAMTS5,APP,BACH1,C21orf59,CCT8,CLDN17,CLDN8,CYYR1,EVA1C,GABPA,GRIK1,HUNK,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,N6AMT1,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,URB1,USP16"
TCGA.AG.4015	21	27166917	28552973	659	-0.5115	NEUTRAL	NA	4	"ADAMTS1,ADAMTS5,APP,CYYR1"
TCGA.AG.3909.01A	21	27253943	27852540	19	0.2436	NEUTRAL	NA	2	"APP,CYYR1"
TCGA.AG.4009.01A	21	27253943	27852540	19	-0.3466	NEUTRAL	NA	2	"APP,CYYR1"
TCGA.AG.A00C.01A	21	27253943	27945137	21	-0.308	NEUTRAL	NA	2	"APP,CYYR1"
TCGA.AA.A00D.01A	21	27253943	28337589	37	0.1201	NEUTRAL	NA	4	"ADAMTS1,ADAMTS5,APP,CYYR1"
TCGA.AA.A010.01A	21	27253943	30315530	52	0.3716	NEUTRAL	NA	6	"ADAMTS1,ADAMTS5,APP,CYYR1,LTN1,N6AMT1"
TCGA.AA.A004.01A	21	27253943	32519172	172	4.00E-04	NEUTRAL	NA	47	"ADAMTS1,ADAMTS5,APP,BACH1,CCT8,CLDN17,CLDN8,CYYR1,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,N6AMT1,RWDD2B,TIAM1,USP16"
TCGA.AG.A008.01A	21	27253943	34918482	358	0.1141	NEUTRAL	NA	69	"ADAMTS1,ADAMTS5,APP,BACH1,C21orf59,C21orf62,CCT8,CLDN17,CLDN8,CYYR1,DNAJC28,EVA1C,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,N6AMT1,OLIG1,OLIG2,PAXBP1,RWDD2B,SCAF4,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1,USP16"
TCGA.AA.3869	21	27307418	48084819	7884	-0.001	NEUTRAL	NA	195	Too-Many
TCGA.DC.4745	21	27319268	27576468	113	-0.0524	NEUTRAL	NA	1	APP
TCGA.AA.A00Q.01A	21	27326863	28337589	32	-0.0364	NEUTRAL	NA	4	"ADAMTS1,ADAMTS5,APP,CYYR1"
TCGA.DC.4749	21	27387569	28347118	456	-0.5001	NEUTRAL	NA	4	"ADAMTS1,ADAMTS5,APP,CYYR1"
TCGA.AG.3882	21	27457716	27487307	13	0.0898	NEUTRAL	NA	1	APP
TCGA.AG.3882	21	27553308	27718351	69	-0.0627	NEUTRAL	NA	0	None
TCGA.DC.4745	21	27581282	27629567	23	-0.4438	NEUTRAL	NA	0	None
TCGA.AG.3882	21	27781190	27791256	13	-0.0883	NEUTRAL	NA	0	None
TCGA.AG.3882	21	27795098	27801662	11	-0.5121	NEUTRAL	NA	0	None
TCGA.AG.3882	21	27813704	27834623	16	0.0049	NEUTRAL	NA	0	None
TCGA.DC.6158	21	27814329	29919062	875	-0.0529	NEUTRAL	NA	3	"ADAMTS1,ADAMTS5,CYYR1"
TCGA.AG.3611.01A	21	27938538	28337589	18	-0.3179	NEUTRAL	NA	3	"ADAMTS1,ADAMTS5,CYYR1"
TCGA.AG.3882	21	27958587	28110568	80	0.0095	NEUTRAL	NA	0	None
TCGA.D5.6533	21	28014081	28970687	485	-0.1574	NEUTRAL	NA	2	"ADAMTS1,ADAMTS5"
TCGA.AA.3544	21	28139415	29919062	726	-0.0088	NEUTRAL	NA	2	"ADAMTS1,ADAMTS5"
TCGA.AG.A00C.01A	21	28209851	28214606	7	0.2376	NEUTRAL	NA	1	ADAMTS1
TCGA.AG.A01N.01A	21	28213269	33032022	166	-0.3498	NEUTRAL	NA	46	"ADAMTS1,ADAMTS5,BACH1,CCT8,CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,N6AMT1,RWDD2B,SOD1,TIAM1,USP16"
TCGA.CK.5914.01A	21	28216492	30248660	10	-0.1143	NEUTRAL	NA	3	"ADAMTS1,ADAMTS5,N6AMT1"
TCGA.AG.A00C.01A	21	28216492	30332831	34	-0.1828	NEUTRAL	NA	4	"ADAMTS1,ADAMTS5,LTN1,N6AMT1"
TCGA.AG.3909.01A	21	28216492	30464710	78	-0.3199	NEUTRAL	NA	8	"ADAMTS1,ADAMTS5,CCT8,LTN1,MAP3K7CL,N6AMT1,RWDD2B,USP16"
TCGA.DY.A1DC	21	28293094	37694088	3401	-0.0284	NEUTRAL	NA	85	"ADAMTS5,ATP5O,BACH1,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CCT8,CLDN17,CLDN8,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,EVA1C,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC400863,LTN1,MAP3K7CL,MIS18A,MORC3,MRAP,MRPS6,N6AMT1,OLIG1,OLIG2,PAXBP1,RCAN1,RUNX1,RWDD2B,SCAF4,SETD4,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1,USP16"
TCGA.AA.A01Z	21	28310027	30173300	748	-0.0628	NEUTRAL	NA	1	ADAMTS5
TCGA.AA.A00N.01A	21	28315652	30255250	8	-0.4472	NEUTRAL	NA	2	"ADAMTS5,N6AMT1"
TCGA.DC.4749	21	28348082	39993765	4233	0.0066	NEUTRAL	NA	97	"ATP5O,BACH1,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CCT8,CHAF1B,CLDN14,CLDN17,CLDN8,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,DSCR3,DSCR4,DYRK1A,ERG,EVA1C,GART,GRIK1,HLCS,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC400863,LTN1,MAP3K7CL,MIS18A,MORC3,MRAP,MRPS6,N6AMT1,OLIG1,OLIG2,PAXBP1,PIGP,RCAN1,RIPPLY3,RUNX1,RWDD2B,SCAF4,SETD4,SIM2,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TTC3,URB1,USP16"
TCGA.AG.3882	21	28358303	28407514	31	-0.0093	NEUTRAL	NA	0	None
TCGA.AG.3882	21	28513235	28617819	57	-0.054	NEUTRAL	NA	0	None
TCGA.AG.4015	21	28567289	30376144	668	-0.4606	NEUTRAL	NA	2	"LTN1,N6AMT1"
TCGA.DM.A1D7	21	28681296	48084819	7232	0.0171	NEUTRAL	NA	191	Too-Many
TCGA.AG.3882	21	28852034	28905980	15	0.031	NEUTRAL	NA	0	None
TCGA.AG.3882	21	28935094	28946275	7	-0.4639	NEUTRAL	NA	0	None
TCGA.AG.3882	21	28957143	29023626	16	-0.0412	NEUTRAL	NA	0	None
TCGA.AG.3882	21	29174611	29454226	72	-0.0717	NEUTRAL	NA	0	None
TCGA.AG.3882	21	29700331	29945099	118	-0.0848	NEUTRAL	NA	0	None
TCGA.AA.3666	21	29885138	30240577	153	0.1915	NEUTRAL	NA	0	None
TCGA.AG.3882	21	29958892	30214978	125	-0.0912	NEUTRAL	NA	0	None
TCGA.AA.3867	21	29962376	48084819	6771	-0.0337	NEUTRAL	NA	191	Too-Many
TCGA.AA.3860	21	30199549	48084819	6661	-0.004	NEUTRAL	NA	191	Too-Many
TCGA.AA.A01Z	21	30219020	32038922	593	-0.0613	NEUTRAL	NA	35	"BACH1,CCT8,CLDN17,CLDN8,GRIK1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,LTN1,MAP3K7CL,N6AMT1,RWDD2B,USP16"
TCGA.AA.3666	21	30244876	33810198	1230	-0.149	NEUTRAL	NA	50	"BACH1,CCT8,CLDN17,CLDN8,EVA1C,GRIK1,HUNK,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,N6AMT1,RWDD2B,SCAF4,SOD1,TIAM1,URB1,USP16"
TCGA.AG.4009.01A	21	30248660	30343545	31	-0.241	NEUTRAL	NA	2	"LTN1,N6AMT1"
TCGA.AA.A00L.01A	21	30248660	31066188	93	-0.1029	NEUTRAL	NA	8	"BACH1,CCT8,GRIK1,LTN1,MAP3K7CL,N6AMT1,RWDD2B,USP16"
TCGA.AG.3611.01A	21	30248660	34793770	289	0.0853	NEUTRAL	NA	61	"BACH1,C21orf59,C21orf62,CCT8,CLDN17,CLDN8,EVA1C,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,N6AMT1,OLIG1,OLIG2,PAXBP1,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,URB1,USP16"
TCGA.CK.5914.01A	21	30257497	30354568	30	-0.0894	NEUTRAL	NA	2	"LTN1,N6AMT1"
TCGA.DC.4745	21	30259083	30507664	55	-0.1044	NEUTRAL	NA	5	"CCT8,LTN1,MAP3K7CL,RWDD2B,USP16"
TCGA.AA.A010.01A	21	30315967	30421053	43	-0.491	NEUTRAL	NA	3	"LTN1,RWDD2B,USP16"
TCGA.AG.A00C.01A	21	30338166	30927331	57	0.1464	NEUTRAL	NA	7	"BACH1,CCT8,GRIK1,LTN1,MAP3K7CL,RWDD2B,USP16"
TCGA.AA.A00Q.01A	21	30359025	30391478	5	0.0388	NEUTRAL	NA	2	"LTN1,RWDD2B"
TCGA.AG.3906.01A	21	30378699	30402875	4	0.3626	NEUTRAL	NA	2	"RWDD2B,USP16"
TCGA.AG.4009.01A	21	30400167	32638279	112	-0.2789	NEUTRAL	NA	40	"BACH1,CCT8,CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,MAP3K7CL,TIAM1,USP16"
TCGA.AA.3544	21	30405762	44434494	5543	0.0282	NEUTRAL	NA	129	Too-Many
TCGA.AA.A00N.01A	21	30407111	30410627	4	-0.3659	NEUTRAL	NA	1	USP16
TCGA.AA.A00N.01A	21	30411310	30428733	11	0.2442	NEUTRAL	NA	2	"CCT8,USP16"
TCGA.AA.A010.01A	21	30422360	32638279	109	0.2619	NEUTRAL	NA	40	"BACH1,CCT8,CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,MAP3K7CL,TIAM1,USP16"
TCGA.AA.A00N.01A	21	30432813	30435636	4	-0.1417	NEUTRAL	NA	1	CCT8
TCGA.AA.A00Q.01A	21	30439821	38459511	469	0.363	NEUTRAL	NA	87	"ATP5O,BACH1,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CCT8,CHAF1B,CLDN14,CLDN17,CLDN8,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,EVA1C,GART,GRIK1,HLCS,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC400863,MAP3K7CL,MIS18A,MORC3,MRAP,MRPS6,OLIG1,OLIG2,PAXBP1,PIGP,RCAN1,RIPPLY3,RUNX1,SCAF4,SETD4,SIM2,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TTC3,URB1"
TCGA.AA.A01K.01A	21	30441717	32638279	87	-0.0507	NEUTRAL	NA	39	"BACH1,CCT8,CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,MAP3K7CL,TIAM1"
TCGA.AG.3909.01A	21	30521443	32598055	81	0.2907	NEUTRAL	NA	38	"BACH1,CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,MAP3K7CL,TIAM1"
TCGA.AG.4015	21	30526910	48084819	6564	-0.4625	NEUTRAL	NA	186	Too-Many
TCGA.DC.4745	21	30590285	30849712	59	-0.0935	NEUTRAL	NA	1	BACH1
TCGA.DM.A0XD	21	30678071	48084819	6518	0	NEUTRAL	NA	185	Too-Many
TCGA.DM.A28K	21	30701095	30952972	80	-0.0964	NEUTRAL	NA	2	"BACH1,GRIK1"
TCGA.AA.A00D.01A	21	30723906	32638279	76	0.108	NEUTRAL	NA	36	"CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,TIAM1"
TCGA.DC.4745	21	30858138	31027871	81	-0.1323	NEUTRAL	NA	1	GRIK1
TCGA.AG.A00C.01A	21	30933908	32589822	67	-0.3932	NEUTRAL	NA	36	"CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,TIAM1"
TCGA.CK.5914.01A	21	30963383	32624016	73	-0.0088	NEUTRAL	NA	36	"CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,TIAM1"
TCGA.DM.A1D0	21	30989799	48084819	6389	0.0097	NEUTRAL	NA	184	Too-Many
TCGA.F5.6811.01A	21	31012720	46908563	1640	-0.0346	NEUTRAL	NA	170	Too-Many
TCGA.F4.6459	21	31120298	35656196	1511	-0.079	NEUTRAL	NA	65	"ATP5O,C21orf59,C21orf62,CLDN17,CLDN8,CRYZL1,DNAJC28,DONSON,EVA1C,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC400863,MIS18A,MRAP,MRPS6,OLIG1,OLIG2,PAXBP1,SCAF4,SLC5A3,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1"
TCGA.AG.3882	21	31140752	31432106	122	-0.1004	NEUTRAL	NA	1	GRIK1
TCGA.EF.5830	21	31233393	35213846	1280	-0.0021	NEUTRAL	NA	61	"C21orf59,C21orf62,CLDN17,CLDN8,CRYZL1,DNAJC28,DONSON,EVA1C,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,MIS18A,MRAP,OLIG1,OLIG2,PAXBP1,SCAF4,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1"
TCGA.AF.3913	21	31299203	42115068	4210	-0.0358	NEUTRAL	NA	101	Too-Many
TCGA.AG.A01W.01A	21	31332406	31828128	29	-0.2559	NEUTRAL	NA	12	"CLDN17,CLDN8,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1"
TCGA.DY.A1DG	21	31424401	32450136	319	-0.4578	NEUTRAL	NA	34	"CLDN17,CLDN8,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1"
TCGA.DC.6158	21	31539310	37427990	2094	-0.0612	NEUTRAL	NA	71	"ATP5O,C21orf140,C21orf59,C21orf62,CLDN8,CLIC6,CRYZL1,DNAJC28,DONSON,EVA1C,GART,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LOC400863,MIS18A,MRAP,MRPS6,OLIG1,OLIG2,PAXBP1,RCAN1,RUNX1,SCAF4,SETD4,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1"
TCGA.D5.6923	21	31707454	48084819	6137	-0.0028	NEUTRAL	NA	178	Too-Many
TCGA.AA.3522	21	31770219	48084819	6127	-0.3675	NEUTRAL	NA	174	Too-Many
TCGA.AF.6136	21	31782223	48084819	6112	-0.3632	NEUTRAL	NA	174	Too-Many
TCGA.A6.5661	21	31850525	43090957	4460	-0.207	NEUTRAL	NA	94	"ATP5O,B3GALT5,BACE2,BRWD1,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,EVA1C,FAM3B,GART,HLCS,HMGN1,HUNK,IFNAR1,IFNAR2,IFNGR2,IGSF5,IL10RB,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,KRTAP11-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LCA5L,LOC400863,MIS18A,MORC3,MRAP,MRPS6,MX1,MX2,OLIG1,OLIG2,PAXBP1,PCP4,PIGP,PLAC4,PSMG1,RCAN1,RIPPLY3,RUNX1,SCAF4,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TMPRSS2,TTC3,URB1,WRB"
TCGA.AG.A01W.01A	21	31953904	31995133	23	0.144	NEUTRAL	NA	6	"KRTAP20-1,KRTAP22-1,KRTAP22-2,KRTAP6-1,KRTAP6-2,KRTAP6-3"
TCGA.AG.A01W.01A	21	31995931	32568957	19	-0.3496	NEUTRAL	NA	10	"KRTAP11-1,KRTAP19-8,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP7-1,KRTAP8-1,TIAM1"
TCGA.AA.3972	21	32050020	48084819	6058	0.1634	NEUTRAL	NA	156	Too-Many
TCGA.AA.3850	21	32200908	48084819	6022	0.27845	NEUTRAL	NA	152	Too-Many
TCGA.AA.3941	21	32211245	42479571	4106	-0.1485	NEUTRAL	NA	68	"ATP5O,B3GALT5,BRWD1,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,EVA1C,GART,HLCS,HMGN1,HUNK,IFNAR1,IFNAR2,IFNGR2,IGSF5,IL10RB,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,KRTAP11-1,KRTAP19-8,LCA5L,LOC400863,MIS18A,MORC3,MRAP,MRPS6,OLIG1,OLIG2,PAXBP1,PCP4,PIGP,PSMG1,RCAN1,RIPPLY3,RUNX1,SCAF4,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TTC3,URB1,WRB"
TCGA.AA.A01Z	21	32261640	32668005	151	-0.0155	NEUTRAL	NA	2	"KRTAP19-8,TIAM1"
TCGA.A6.2672	21	32338205	48084819	5956	-0.3472	NEUTRAL	NA	150	Too-Many
TCGA.AG.3891.01A	21	32410522	34542370	137	-0.0233	NEUTRAL	NA	16	"C21orf59,C21orf62,EVA1C,HUNK,KRTAP19-8,MIS18A,MRAP,OLIG1,OLIG2,PAXBP1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,URB1"
TCGA.AG.3906.01A	21	32410522	34918482	195	-0.502	NEUTRAL	NA	24	"C21orf59,C21orf62,DNAJC28,EVA1C,GART,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,KRTAP19-8,MIS18A,MRAP,OLIG1,OLIG2,PAXBP1,SCAF4,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1"
TCGA.RU.A8FL	21	32434838	48084819	5929	0.1826	NEUTRAL	NA	149	Too-Many
TCGA.AG.A026	21	32444445	32655396	78	-0.1372	NEUTRAL	NA	1	TIAM1
TCGA.AA.3982	21	32461454	34366310	656	0.1931	NEUTRAL	NA	13	"C21orf59,C21orf62,EVA1C,HUNK,MIS18A,MRAP,PAXBP1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,URB1"
TCGA.AA.3811	21	32486007	48084819	5909	-0.0372	NEUTRAL	NA	149	Too-Many
TCGA.AA.A00L.01A	21	32499325	42870002	644	-0.0591	NEUTRAL	NA	72	"ATP5O,B3GALT5,BACE2,BRWD1,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,EVA1C,FAM3B,GART,HLCS,HMGN1,HUNK,IFNAR1,IFNAR2,IFNGR2,IGSF5,IL10RB,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,LCA5L,LOC400863,MIS18A,MORC3,MRAP,MRPS6,MX1,MX2,OLIG1,OLIG2,PAXBP1,PCP4,PIGP,PLAC4,PSMG1,RCAN1,RIPPLY3,RUNX1,SCAF4,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TMPRSS2,TTC3,URB1,WRB"
TCGA.AA.A02H.01A	21	32513384	48084135	1158	-0.2276	NEUTRAL	NA	149	Too-Many
TCGA.DY.A1DG	21	32523355	32691458	66	0.0083	NEUTRAL	NA	1	TIAM1
TCGA.AA.A004.01A	21	32524917	48084135	1117	-0.5013	NEUTRAL	NA	149	Too-Many
TCGA.AG.A01W.01A	21	32572837	32619374	14	0.1839	NEUTRAL	NA	1	TIAM1
TCGA.AG.A00C.01A	21	32595683	34074218	92	0.0387	NEUTRAL	NA	11	"C21orf59,EVA1C,HUNK,MIS18A,MRAP,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,URB1"
TCGA.AG.3909.01A	21	32617763	33032022	4	-0.0739	NEUTRAL	NA	2	"SOD1,TIAM1"
TCGA.AG.A01J.01A	21	32638279	47974040	1133	-0.2166	NEUTRAL	NA	147	Too-Many
TCGA.AG.A01W.01A	21	32638709	32773166	39	-0.307	NEUTRAL	NA	1	TIAM1
TCGA.AG.3882	21	32794634	33340133	175	-0.0715	NEUTRAL	NA	4	"HUNK,SCAF4,SOD1,TIAM1"
TCGA.AG.3592	21	32803211	46476334	5338	-0.0151	NEUTRAL	NA	132	Too-Many
TCGA.AG.A026	21	32839086	32857706	15	-0.1294	NEUTRAL	NA	1	TIAM1
TCGA.AG.A026	21	32876396	48084819	5747	-0.1216	NEUTRAL	NA	149	Too-Many
TCGA.AG.A01W.01A	21	32895993	32940546	16	0.3671	NEUTRAL	NA	1	TIAM1
TCGA.A6.5665	21	32935636	41825135	3490	-0.4245	NEUTRAL	NA	65	"ATP5O,B3GALT5,BRWD1,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,EVA1C,GART,HLCS,HMGN1,HUNK,IFNAR1,IFNAR2,IFNGR2,IGSF5,IL10RB,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,LCA5L,LOC400863,MIS18A,MORC3,MRAP,MRPS6,OLIG1,OLIG2,PAXBP1,PCP4,PIGP,PSMG1,RCAN1,RIPPLY3,RUNX1,SCAF4,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TMEM50B,TTC3,URB1,WRB"
TCGA.AG.A01W.01A	21	32944329	33063947	39	-0.0127	NEUTRAL	NA	2	"SCAF4,SOD1"
TCGA.AA.A010.01A	21	33032022	33312418	26	-0.497	NEUTRAL	NA	3	"HUNK,SCAF4,SOD1"
TCGA.AA.A00N.01A	21	33032022	34074218	131	-0.2485	NEUTRAL	NA	10	"C21orf59,EVA1C,HUNK,MIS18A,MRAP,SCAF4,SOD1,SYNJ1,TCP10L,URB1"
TCGA.AA.A02E.01A	21	33036050	38444687	379	-0.3057	NEUTRAL	NA	47	"ATP5O,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,EVA1C,GART,HLCS,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,LOC400863,MIS18A,MORC3,MRAP,MRPS6,OLIG1,OLIG2,PAXBP1,PIGP,RCAN1,RIPPLY3,RUNX1,SCAF4,SETD4,SIM2,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TMEM50B,URB1"
TCGA.AA.A00O.01A	21	33036050	48084135	1146	-0.3019	NEUTRAL	NA	148	Too-Many
TCGA.AG.4009.01A	21	33057345	33077658	15	-0.332	NEUTRAL	NA	1	SCAF4
TCGA.AG.A00Y.01A	21	33074517	48084135	1228	0.2699	NEUTRAL	NA	147	Too-Many
TCGA.AA.A00D.01A	21	33078532	33829856	25	0.2715	NEUTRAL	NA	6	"EVA1C,HUNK,MIS18A,MRAP,SCAF4,URB1"
TCGA.AG.4009.01A	21	33078532	34003287	37	0.0215	NEUTRAL	NA	9	"C21orf59,EVA1C,HUNK,MIS18A,MRAP,SCAF4,SYNJ1,TCP10L,URB1"
TCGA.AG.A01W.01A	21	33087824	33833311	58	-0.337	NEUTRAL	NA	6	"EVA1C,HUNK,MIS18A,MRAP,SCAF4,URB1"
TCGA.AA.3529	21	33151084	44829086	4771	-0.0047	NEUTRAL	NA	90	"ABCG1,ATP5O,B3GALT5,BACE2,BRWD1,C21orf140,C21orf59,C21orf62,C2CD2,CBR1,CBR3,CBS,CHAF1B,CLDN14,CLIC6,CRYAA,CRYZL1,DNAJC28,DONSON,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ERVH48-1,ETS2,EVA1C,FAM3B,GART,HLCS,HMGN1,HUNK,IFNAR1,IFNAR2,IFNGR2,IGSF5,IL10RB,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,LCA5L,LOC400863,MIS18A,MORC3,MRAP,MRPS6,MX1,MX2,NDUFV3,OLIG1,OLIG2,PAXBP1,PCP4,PDE9A,PIGP,PKNOX1,PLAC4,PRDM15,PSMG1,RCAN1,RIPK4,RIPPLY3,RSPH1,RUNX1,SETD4,SH3BGR,SIM2,SLC37A1,SLC5A3,SMIM11,SON,SYNJ1,TCP10L,TFF1,TFF2,TFF3,TMEM50B,TMPRSS2,TMPRSS3,TTC3,U2AF1,UBASH3A,UMODL1,URB1,WDR4,WRB,ZBTB21"
TCGA.AZ.4616	21	33209378	48084819	5656	-0.2528	NEUTRAL	NA	146	Too-Many
TCGA.AG.3909.01A	21	33296763	33370857	10	0.1696	NEUTRAL	NA	1	HUNK
TCGA.DC.4745	21	33369260	36536454	1110	-0.2832	NEUTRAL	NA	34	"ATP5O,C21orf140,C21orf59,C21orf62,CLIC6,CRYZL1,DNAJC28,DONSON,EVA1C,GART,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,LOC400863,MIS18A,MRAP,MRPS6,OLIG1,OLIG2,PAXBP1,RCAN1,RUNX1,SLC5A3,SMIM11,SON,SYNJ1,TCP10L,TMEM50B,URB1"
TCGA.AG.3909.01A	21	33650971	33956439	19	-0.0944	NEUTRAL	NA	5	"EVA1C,MIS18A,MRAP,TCP10L,URB1"
TCGA.AA.A010.01A	21	33729795	33757817	14	0.0017	NEUTRAL	NA	1	URB1
TCGA.AA.3666	21	33813550	34986861	339	0.1109	NEUTRAL	NA	18	"C21orf59,C21orf62,CRYZL1,DNAJC28,DONSON,EVA1C,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,OLIG1,OLIG2,PAXBP1,SON,SYNJ1,TCP10L,TMEM50B"
TCGA.AG.A01W.01A	21	33851286	33870472	9	-0.0397	NEUTRAL	NA	1	EVA1C
TCGA.AG.A01W.01A	21	33872477	33885271	10	0.3389	NEUTRAL	NA	1	EVA1C
TCGA.AG.A01W.01A	21	33889871	34161357	42	-0.2241	NEUTRAL	NA	4	"C21orf59,PAXBP1,SYNJ1,TCP10L"
TCGA.AA.3930.01A	21	34011191	34060546	23	-0.2452	NEUTRAL	NA	1	SYNJ1
TCGA.AG.4009.01A	21	34017201	34117837	32	-0.467	NEUTRAL	NA	2	"PAXBP1,SYNJ1"
TCGA.AG.3909.01A	21	34028960	34074218	18	-0.1642	NEUTRAL	NA	1	SYNJ1
TCGA.DY.A1DG	21	34031855	35623485	473	-0.4817	NEUTRAL	NA	20	"ATP5O,C21orf62,CRYZL1,DNAJC28,DONSON,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,LOC400863,MRPS6,OLIG1,OLIG2,PAXBP1,SLC5A3,SON,SYNJ1,TMEM50B"
TCGA.AA.3509.01A	21	34038693	34132049	28	0.2585	NEUTRAL	NA	2	"PAXBP1,SYNJ1"
TCGA.AA.3848	21	34059206	48077811	5355	-0.0915	NEUTRAL	NA	139	Too-Many
TCGA.AA.3930.01A	21	34066492	34602745	42	0.1246	NEUTRAL	NA	6	"C21orf62,IFNAR2,OLIG1,OLIG2,PAXBP1,SYNJ1"
TCGA.AG.A00C.01A	21	34099054	34652010	35	0.3624	NEUTRAL	NA	7	"C21orf62,IFNAR2,IL10RB,OLIG1,OLIG2,PAXBP1,SYNJ1"
TCGA.AA.3509.01A	21	34133322	35469071	182	-0.3081	NEUTRAL	NA	19	"ATP5O,C21orf62,CRYZL1,DNAJC28,DONSON,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,LOC400863,MRPS6,OLIG1,OLIG2,PAXBP1,SLC5A3,SON,TMEM50B"
TCGA.AG.A023.01A	21	34136618	38459511	284	-0.4557	NEUTRAL	NA	38	"ATP5O,C21orf140,C21orf62,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,GART,HLCS,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,LOC400863,MORC3,MRPS6,OLIG1,OLIG2,PAXBP1,PIGP,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SLC5A3,SMIM11,SON,TMEM50B,TTC3"
TCGA.AA.A00N.01A	21	34143650	34602745	19	0.0841	NEUTRAL	NA	5	"C21orf62,IFNAR2,OLIG1,OLIG2,PAXBP1"
TCGA.AA.A00D.01A	21	34182858	34542370	4	-0.2137	NEUTRAL	NA	3	"C21orf62,OLIG1,OLIG2"
TCGA.AG.A01W.01A	21	34197654	36431972	51	-0.1216	NEUTRAL	NA	24	"ATP5O,C21orf140,CLIC6,CRYZL1,DNAJC28,DONSON,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,LOC400863,MRPS6,OLIG1,OLIG2,RCAN1,RUNX1,SLC5A3,SMIM11,SON,TMEM50B"
TCGA.D5.6533	21	34344132	35056246	211	-0.0603	NEUTRAL	NA	13	"CRYZL1,DNAJC28,DONSON,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,OLIG1,OLIG2,SON,TMEM50B"
TCGA.AA.3982	21	34379207	48084819	5255	0.1717	NEUTRAL	NA	136	Too-Many
TCGA.AG.3602	21	34414850	34883797	163	0.1339	NEUTRAL	NA	8	"DNAJC28,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,OLIG1,TMEM50B"
TCGA.EI.6512	21	34513254	48084819	5213	-0.4221	NEUTRAL	NA	134	Too-Many
TCGA.AG.3882	21	34527884	38784623	1489	-0.0935	NEUTRAL	NA	36	"ATP5O,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,DSCR3,DYRK1A,GART,HLCS,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,LOC400863,MORC3,MRPS6,PIGP,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SLC5A3,SMIM11,SON,TMEM50B,TTC3"
TCGA.A6.A56B	21	34584543	37382477	1049	0.3662	NEUTRAL	NA	22	"ATP5O,C21orf140,CLIC6,CRYZL1,DNAJC28,DONSON,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,LOC400863,MRPS6,RCAN1,RUNX1,SLC5A3,SMIM11,SON,TMEM50B"
TCGA.AG.4009.01A	21	34648859	34918482	50	-0.293	NEUTRAL	NA	7	"DNAJC28,GART,IFNAR1,IFNGR2,IL10RB,SON,TMEM50B"
TCGA.AG.A00C.01A	21	34655357	34841044	23	-0.0254	NEUTRAL	NA	4	"IFNAR1,IFNGR2,IL10RB,TMEM50B"
TCGA.AG.3909.01A	21	34655357	34903730	42	-0.1999	NEUTRAL	NA	6	"DNAJC28,GART,IFNAR1,IFNGR2,IL10RB,TMEM50B"
TCGA.AA.A00N.01A	21	34660370	34841044	27	0.149	NEUTRAL	NA	4	"IFNAR1,IFNGR2,IL10RB,TMEM50B"
TCGA.CK.5914.01A	21	34783703	34841044	14	0.0867	NEUTRAL	NA	2	"IFNGR2,TMEM50B"
TCGA.AA.A010.01A	21	34851006	34894445	14	0.0753	NEUTRAL	NA	3	"DNAJC28,GART,TMEM50B"
TCGA.AG.3611.01A	21	34876384	38081410	198	0.1391	NEUTRAL	NA	24	"ATP5O,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DONSON,DOPEY2,GART,ITSN1,KCNE1,KCNE2,LOC400863,MORC3,MRPS6,RCAN1,RUNX1,SETD4,SIM2,SLC5A3,SMIM11,SON"
TCGA.AA.A00N.01A	21	34878232	34897040	9	-0.3543	NEUTRAL	NA	1	GART
TCGA.AG.A00C.01A	21	34883512	34900464	8	0.1792	NEUTRAL	NA	1	GART
TCGA.AA.3930.01A	21	34894445	35208738	81	-0.0385	NEUTRAL	NA	5	"CRYZL1,DONSON,GART,ITSN1,SON"
TCGA.AG.3891.01A	21	34894445	37507443	139	0.1048	NEUTRAL	NA	19	"ATP5O,C21orf140,CBR1,CBR3,CLIC6,CRYZL1,DONSON,GART,ITSN1,KCNE1,KCNE2,LOC400863,MRPS6,RCAN1,RUNX1,SETD4,SLC5A3,SMIM11,SON"
TCGA.AG.3906.01A	21	34921765	34941230	10	0.3093	NEUTRAL	NA	1	SON
TCGA.AF.3914.01A	21	34931514	37652517	153	-0.1249	NEUTRAL	NA	19	"ATP5O,C21orf140,CBR1,CBR3,CLIC6,CRYZL1,DONSON,DOPEY2,ITSN1,KCNE1,KCNE2,LOC400863,MRPS6,RCAN1,RUNX1,SETD4,SLC5A3,SMIM11,SON"
TCGA.AG.A008.01A	21	34941230	35469071	73	0.1447	NEUTRAL	NA	8	"ATP5O,CRYZL1,DONSON,ITSN1,LOC400863,MRPS6,SLC5A3,SON"
TCGA.AG.4009.01A	21	34974510	37571341	101	-0.2584	NEUTRAL	NA	17	"ATP5O,C21orf140,CBR1,CBR3,CLIC6,CRYZL1,DOPEY2,ITSN1,KCNE1,KCNE2,LOC400863,MRPS6,RCAN1,RUNX1,SETD4,SLC5A3,SMIM11"
TCGA.AG.A00C.01A	21	34975673	39947516	271	0.0427	NEUTRAL	NA	31	"ATP5O,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DOPEY2,DSCR3,DSCR4,DYRK1A,ERG,HLCS,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,LOC400863,MORC3,MRPS6,PIGP,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SLC5A3,SMIM11,TTC3"
TCGA.AG.3909.01A	21	34988882	35514670	58	-0.0497	NEUTRAL	NA	6	"ATP5O,CRYZL1,ITSN1,LOC400863,MRPS6,SLC5A3"
TCGA.AA.3666	21	34999977	35210183	34	-0.0872	NEUTRAL	NA	2	"CRYZL1,ITSN1"
TCGA.AA.A00N.01A	21	35091047	36231721	86	0.0301	NEUTRAL	NA	12	"ATP5O,C21orf140,CLIC6,ITSN1,KCNE1,KCNE2,LOC400863,MRPS6,RCAN1,RUNX1,SLC5A3,SMIM11"
TCGA.AA.A01Q.01A	21	35189493	40194558	242	-0.062	NEUTRAL	NA	31	"ATP5O,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,LOC400863,MORC3,MRPS6,PIGP,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SLC5A3,SMIM11,TTC3"
TCGA.A6.3808.01A	21	35199058	41300868	364	-0.1242	NEUTRAL	NA	40	"ATP5O,B3GALT5,BRWD1,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,HMGN1,IGSF5,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,LCA5L,LOC400863,MORC3,MRPS6,PCP4,PIGP,PSMG1,RCAN1,RIPPLY3,RUNX1,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,TTC3,WRB"
TCGA.AA.3666	21	35224874	35641726	160	-0.1166	NEUTRAL	NA	5	"ATP5O,ITSN1,LOC400863,MRPS6,SLC5A3"
TCGA.AA.A02K.01A	21	35260428	42824538	409	0.0423	NEUTRAL	NA	46	"ATP5O,B3GALT5,BACE2,BRWD1,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,FAM3B,HLCS,HMGN1,IGSF5,ITSN1,KCNE1,KCNE2,KCNJ15,KCNJ6,LCA5L,LOC400863,MORC3,MRPS6,MX1,MX2,PCP4,PIGP,PLAC4,PSMG1,RCAN1,RIPPLY3,RUNX1,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,TTC3,WRB"
TCGA.AA.3930.01A	21	35275798	35286679	6	0.0088	NEUTRAL	NA	1	ATP5O
TCGA.AA.3930.01A	21	35287969	35475246	9	-0.3464	NEUTRAL	NA	4	"ATP5O,LOC400863,MRPS6,SLC5A3"
TCGA.AG.A008.01A	21	35475246	39947516	215	0.1348	NEUTRAL	NA	27	"C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCR3,DSCR4,DYRK1A,ERG,HLCS,KCNE1,KCNE2,KCNJ15,KCNJ6,MORC3,MRPS6,PIGP,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SLC5A3,SMIM11,TTC3"
TCGA.AZ.4684.01A	21	35497614	35897335	16	-0.1631	NEUTRAL	NA	6	"C21orf140,KCNE1,KCNE2,MRPS6,RCAN1,SMIM11"
TCGA.AA.3930.01A	21	35497614	36041721	20	0.1275	NEUTRAL	NA	7	"C21orf140,CLIC6,KCNE1,KCNE2,MRPS6,RCAN1,SMIM11"
TCGA.AA.3509.01A	21	35497614	37650263	81	-0.3164	NEUTRAL	NA	12	"C21orf140,CBR1,CBR3,CLIC6,DOPEY2,KCNE1,KCNE2,MRPS6,RCAN1,RUNX1,SETD4,SMIM11"
TCGA.DY.A1DG	21	35625750	35841739	89	-0.1333	NEUTRAL	NA	4	"C21orf140,KCNE1,KCNE2,SMIM11"
TCGA.AG.3602	21	35715716	36876947	481	-0.0464	NEUTRAL	NA	7	"C21orf140,CLIC6,KCNE1,KCNE2,RCAN1,RUNX1,SMIM11"
TCGA.AA.3516	21	35725728	35901289	50	-0.3528	NEUTRAL	NA	5	"C21orf140,KCNE1,KCNE2,RCAN1,SMIM11"
TCGA.AG.3909.01A	21	35742751	37758385	93	-0.3595	NEUTRAL	NA	13	"C21orf140,CBR1,CBR3,CHAF1B,CLIC6,DOPEY2,KCNE1,KCNE2,MORC3,RCAN1,RUNX1,SETD4,SMIM11"
TCGA.DY.A1DG	21	35853470	37051295	536	-0.5067	NEUTRAL	NA	4	"CLIC6,KCNE1,RCAN1,RUNX1"
TCGA.AA.3516	21	35903829	48084819	4773	0.0481	NEUTRAL	NA	115	Too-Many
TCGA.EF.5830	21	35993019	36658376	292	-0.0071	NEUTRAL	NA	2	"CLIC6,RUNX1"
TCGA.AA.3930.01A	21	36171560	37580985	29	0.0511	NEUTRAL	NA	5	"CBR1,CBR3,DOPEY2,RUNX1,SETD4"
TCGA.F4.6569	21	36202439	41314090	2123	-0.3368	NEUTRAL	NA	29	"B3GALT5,BRWD1,CBR1,CBR3,CHAF1B,CLDN14,DOPEY2,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,MORC3,PCP4,PIGP,PSMG1,RIPPLY3,RUNX1,SETD4,SH3BGR,SIM2,TTC3,WRB"
TCGA.F5.6863	21	36234199	48084819	4634	-0.337	NEUTRAL	NA	113	Too-Many
TCGA.F4.6459	21	36255820	48084819	4636	-0.1064	NEUTRAL	NA	113	Too-Many
TCGA.AG.3894	21	36335980	48084819	4592	-0.0139	NEUTRAL	NA	113	Too-Many
TCGA.AG.A01W.01A	21	36531424	36539167	4	0.1114	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	21	36666495	42007204	320	-0.0293	NEUTRAL	NA	29	"B3GALT5,BRWD1,CBR1,CBR3,CHAF1B,CLDN14,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,MORC3,PCP4,PIGP,PSMG1,RIPPLY3,SETD4,SH3BGR,SIM2,TTC3,WRB"
TCGA.D5.6926	21	36878949	45610517	3620	-0.0333	NEUTRAL	NA	66	"ABCG1,AGPAT3,B3GALT5,BACE2,BRWD1,C21orf33,C2CD2,CBR1,CBR3,CBS,CHAF1B,CLDN14,CRYAA,CSTB,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ERVH48-1,ETS2,FAM3B,HLCS,HMGN1,HSF2BP,IGSF5,KCNJ15,KCNJ6,LCA5L,MORC3,MX1,MX2,NDUFV3,PCP4,PDE9A,PDXK,PIGP,PKNOX1,PLAC4,PRDM15,PSMG1,PWP2,RIPK4,RIPPLY3,RRP1,RRP1B,RSPH1,SETD4,SH3BGR,SIK1,SIM2,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TTC3,U2AF1,UBASH3A,UMODL1,WDR4,WRB,ZBTB21"
TCGA.AA.3866	21	36923338	48084819	4325	-0.1352	NEUTRAL	NA	112	Too-Many
TCGA.DC.4745	21	36972947	37129291	74	-0.1154	NEUTRAL	NA	0	None
TCGA.D5.6922	21	37244128	48084819	4196	-0.0023	NEUTRAL	NA	112	Too-Many
TCGA.A6.A56B	21	37389492	48084819	4090	-0.0383	NEUTRAL	NA	112	Too-Many
TCGA.AG.3891.01A	21	37510101	38441788	89	0.3462	NEUTRAL	NA	9	"CBR3,CHAF1B,CLDN14,DOPEY2,HLCS,MORC3,PIGP,RIPPLY3,SIM2"
TCGA.AZ.4681	21	37521842	40319386	1076	0.0103	NEUTRAL	NA	16	"CHAF1B,CLDN14,DOPEY2,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,KCNJ15,KCNJ6,MORC3,PIGP,RIPPLY3,SIM2,TTC3"
TCGA.AA.A00N.01A	21	37571341	37650263	27	0.1225	NEUTRAL	NA	1	DOPEY2
TCGA.AG.4009.01A	21	37572601	37626058	21	0.1308	NEUTRAL	NA	1	DOPEY2
TCGA.AG.4009.01A	21	37632902	37650263	5	-0.2303	NEUTRAL	NA	1	DOPEY2
TCGA.AG.3906.01A	21	37632902	37713650	17	0.0039	NEUTRAL	NA	2	"DOPEY2,MORC3"
TCGA.AA.A010.01A	21	37642263	37652517	4	-0.4116	NEUTRAL	NA	1	DOPEY2
TCGA.AA.A010.01A	21	37692481	37781641	27	-0.2465	NEUTRAL	NA	2	"CHAF1B,MORC3"
TCGA.AF.3914.01A	21	37705884	37744635	14	-0.2655	NEUTRAL	NA	1	MORC3
TCGA.AG.3906.01A	21	37716839	38103294	30	-0.3635	NEUTRAL	NA	4	"CHAF1B,CLDN14,MORC3,SIM2"
TCGA.AA.A00N.01A	21	37781641	38380389	28	-0.4512	NEUTRAL	NA	5	"CHAF1B,CLDN14,HLCS,RIPPLY3,SIM2"
TCGA.AA.A01C.01A	21	37783719	48084135	879	-0.3734	NEUTRAL	NA	107	Too-Many
TCGA.AF.3914.01A	21	37783719	48084135	995	-0.1776	NEUTRAL	NA	107	Too-Many
TCGA.AA.3509.01A	21	37788520	40553651	134	-0.1554	NEUTRAL	NA	15	"CHAF1B,CLDN14,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,KCNJ15,KCNJ6,PIGP,PSMG1,RIPPLY3,SIM2,TTC3"
TCGA.AZ.4684.01A	21	37788520	40555145	135	-0.1852	NEUTRAL	NA	15	"CHAF1B,CLDN14,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,KCNJ15,KCNJ6,PIGP,PSMG1,RIPPLY3,SIM2,TTC3"
TCGA.AG.3883	21	37819070	38089096	122	0.0682	NEUTRAL	NA	2	"CLDN14,SIM2"
TCGA.AA.3930.01A	21	38072000	46379961	813	0.0226	NEUTRAL	NA	88	"ABCG1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ERVH48-1,ETS2,FAM207A,FAM3B,HLCS,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KCNJ15,KCNJ6,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,MX1,MX2,NDUFV3,PCP4,PDE9A,PDXK,PFKL,PIGP,PKNOX1,PLAC4,PRDM15,PSMG1,PTTG1IP,PWP2,RIPK4,RIPPLY3,RRP1,RRP1B,RSPH1,SH3BGR,SIK1,SIM2,SLC37A1,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,TTC3,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,ZBTB21"
TCGA.AG.3611.01A	21	38084781	38113981	6	-0.4337	NEUTRAL	NA	1	SIM2
TCGA.AG.3883	21	38089879	42646991	2066	-0.2796	NEUTRAL	NA	24	"B3GALT5,BACE2,BRWD1,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,PCP4,PIGP,PLAC4,PSMG1,RIPPLY3,SH3BGR,SIM2,TTC3,WRB"
TCGA.AG.3906.01A	21	38115681	38131991	5	0.3163	NEUTRAL	NA	2	"HLCS,SIM2"
TCGA.AG.3611.01A	21	38115681	48084135	860	0.0541	NEUTRAL	NA	105	Too-Many
TCGA.AA.A010.01A	21	38137296	38390153	9	-0.3743	NEUTRAL	NA	2	"HLCS,RIPPLY3"
TCGA.AG.3906.01A	21	38137296	38441788	12	-0.4557	NEUTRAL	NA	3	"HLCS,PIGP,RIPPLY3"
TCGA.AH.6644	21	38165380	38217837	22	-0.3461	NEUTRAL	NA	1	HLCS
TCGA.AH.6644	21	38220425	38290210	20	0.0087	NEUTRAL	NA	1	HLCS
TCGA.DC.4745	21	38297649	38568906	68	-0.1363	NEUTRAL	NA	4	"HLCS,PIGP,RIPPLY3,TTC3"
TCGA.AD.6964	21	38299015	48084819	3814	-0.06	NEUTRAL	NA	104	Too-Many
TCGA.AH.6644	21	38299015	48084819	3809	0.2178	NEUTRAL	NA	104	Too-Many
TCGA.CM.5864	21	38401802	48084819	3780	-0.1083	NEUTRAL	NA	102	Too-Many
TCGA.AG.3891.01A	21	38444350	40652023	136	-0.087	NEUTRAL	NA	11	"BRWD1,DSCR3,DSCR4,DYRK1A,ERG,ETS2,KCNJ15,KCNJ6,PIGP,PSMG1,TTC3"
TCGA.AA.A02E.01A	21	38459511	42551106	202	0.1784	NEUTRAL	NA	20	"B3GALT5,BACE2,BRWD1,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,PCP4,PLAC4,PSMG1,SH3BGR,TTC3,WRB"
TCGA.AG.A023.01A	21	38460053	41740979	196	0.1128	NEUTRAL	NA	18	"B3GALT5,BRWD1,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,PCP4,PSMG1,SH3BGR,TTC3,WRB"
TCGA.AA.A010.01A	21	38468813	38512810	12	-0.131	NEUTRAL	NA	1	TTC3
TCGA.AG.3909.01A	21	38468813	38573693	39	-8.00E-04	NEUTRAL	NA	1	TTC3
TCGA.AG.4009.01A	21	38468813	39947516	75	-0.1963	NEUTRAL	NA	7	"DSCR3,DSCR4,DYRK1A,ERG,KCNJ15,KCNJ6,TTC3"
TCGA.EF.5830	21	38494917	38846825	85	0.003	NEUTRAL	NA	3	"DSCR3,DYRK1A,TTC3"
TCGA.DC.4745	21	38572219	39153263	201	-0.461	NEUTRAL	NA	4	"DSCR3,DYRK1A,KCNJ6,TTC3"
TCGA.AG.A02G.01A	21	38604619	40181943	34	0.1285	NEUTRAL	NA	7	"DSCR3,DSCR4,DYRK1A,ERG,ETS2,KCNJ15,KCNJ6"
TCGA.AG.3909.01A	21	38639467	39947516	30	0.1734	NEUTRAL	NA	6	"DSCR3,DSCR4,DYRK1A,ERG,KCNJ15,KCNJ6"
TCGA.D5.6533	21	38648483	39165569	188	-0.0945	NEUTRAL	NA	2	"DYRK1A,KCNJ6"
TCGA.CK.5914.01A	21	38792585	39947516	32	-0.0889	NEUTRAL	NA	5	"DSCR4,DYRK1A,ERG,KCNJ15,KCNJ6"
TCGA.AA.3870	21	38796727	48084819	3701	0.0778	NEUTRAL	NA	99	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,DSCR4,DYRK1A,ERG,ERVH48-1,ETS2,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KCNJ15,KCNJ6,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.CK.6748	21	39293518	39806884	187	-0.1063	NEUTRAL	NA	3	"DSCR4,ERG,KCNJ15"
TCGA.AA.A01Z	21	39382094	47754862	3317	-0.0123	NEUTRAL	NA	94	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DNMT3L,DSCAM,DSCR4,ERG,ERVH48-1,ETS2,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KCNJ15,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.DY.A1DC	21	39441729	48084819	3397	-0.0297	NEUTRAL	NA	97	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,DSCR4,ERG,ERVH48-1,ETS2,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KCNJ15,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AA.3666	21	39465184	39519777	9	-0.0856	NEUTRAL	NA	1	DSCR4
TCGA.DC.4745	21	39804986	46374123	2802	-0.3645	NEUTRAL	NA	78	"ABCG1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,DSCAM,ERG,ERVH48-1,ETS2,FAM207A,FAM3B,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,MX1,MX2,NDUFV3,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,PRDM15,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SH3BGR,SIK1,SLC37A1,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,ZBTB21"
TCGA.DC.4749	21	39997540	46583588	2748	-0.4825	NEUTRAL	NA	79	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,DSCAM,ERG,ERVH48-1,ETS2,FAM207A,FAM3B,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,MX1,MX2,NDUFV3,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,PRDM15,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SH3BGR,SIK1,SLC37A1,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,ZBTB21"
TCGA.AG.A00C.01A	21	40181943	40587115	27	0.3194	NEUTRAL	NA	3	"BRWD1,ETS2,PSMG1"
TCGA.AG.A02G.01A	21	40188876	48084135	743	-0.2007	NEUTRAL	NA	94	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,ETS2,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AG.A008.01A	21	40191378	41160005	74	0.1742	NEUTRAL	NA	9	"B3GALT5,BRWD1,ETS2,HMGN1,IGSF5,LCA5L,PSMG1,SH3BGR,WRB"
TCGA.DM.A28F	21	40307224	40373762	53	-0.0411	NEUTRAL	NA	0	None
TCGA.DM.A28F	21	40376724	48084819	2964	0.3262	NEUTRAL	NA	93	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AZ.4681	21	40398054	40430549	19	0.0882	NEUTRAL	NA	0	None
TCGA.CM.4746	21	40445318	48084819	2924	0.0116	NEUTRAL	NA	93	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AY.6196	21	40468429	48084819	2866	-0.4949	NEUTRAL	NA	93	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AZ.4681	21	40505568	44591121	1896	0.0493	NEUTRAL	NA	37	"ABCG1,B3GALT5,BACE2,BRWD1,C2CD2,CBS,CRYAA,DSCAM,ERVH48-1,FAM3B,HMGN1,IGSF5,LCA5L,MX1,MX2,NDUFV3,PCP4,PDE9A,PKNOX1,PLAC4,PRDM15,PSMG1,RIPK4,RSPH1,SH3BGR,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,U2AF1,UBASH3A,UMODL1,WDR4,WRB,ZBTB21"
TCGA.EF.5830	21	40527899	41599145	535	0.0248	NEUTRAL	NA	10	"B3GALT5,BRWD1,DSCAM,HMGN1,IGSF5,LCA5L,PCP4,PSMG1,SH3BGR,WRB"
TCGA.AA.A010.01A	21	40551795	40568143	6	0.1803	NEUTRAL	NA	2	"BRWD1,PSMG1"
TCGA.AG.4009.01A	21	40552200	40670315	40	-0.3493	NEUTRAL	NA	2	"BRWD1,PSMG1"
TCGA.AA.A01Q.01A	21	40555145	41300868	77	0.1775	NEUTRAL	NA	9	"B3GALT5,BRWD1,HMGN1,IGSF5,LCA5L,PCP4,PSMG1,SH3BGR,WRB"
TCGA.AG.3909.01A	21	40568143	40883578	58	-0.1938	NEUTRAL	NA	5	"BRWD1,HMGN1,LCA5L,SH3BGR,WRB"
TCGA.AA.A010.01A	21	40568738	40601214	16	-0.3982	NEUTRAL	NA	1	BRWD1
TCGA.AZ.4684.01A	21	40570681	40584550	7	0.3573	NEUTRAL	NA	1	BRWD1
TCGA.CK.5914.01A	21	40574264	40627534	19	-0.1303	NEUTRAL	NA	1	BRWD1
TCGA.AA.A00N.01A	21	40582695	40596298	7	0.2598	NEUTRAL	NA	1	BRWD1
TCGA.AA.3509.01A	21	40587115	48084135	1013	-0.1737	NEUTRAL	NA	92	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AZ.4684.01A	21	40587115	48084135	1013	-0.2362	NEUTRAL	NA	92	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AG.A00C.01A	21	40590030	40670315	26	-0.1024	NEUTRAL	NA	1	BRWD1
TCGA.AA.A010.01A	21	40604053	40646261	12	0.2809	NEUTRAL	NA	1	BRWD1
TCGA.AA.A00N.01A	21	40636369	40652023	9	0.1866	NEUTRAL	NA	1	BRWD1
TCGA.AA.A010.01A	21	40648073	40652023	4	-0.3849	NEUTRAL	NA	1	BRWD1
TCGA.AG.3906.01A	21	40665740	40752284	8	0.2663	NEUTRAL	NA	3	"BRWD1,HMGN1,WRB"
TCGA.AG.3891.01A	21	40665740	41173145	34	0.249	NEUTRAL	NA	7	"B3GALT5,BRWD1,HMGN1,IGSF5,LCA5L,SH3BGR,WRB"
TCGA.AG.A00C.01A	21	40715050	40834252	16	0.3385	NEUTRAL	NA	4	"HMGN1,LCA5L,SH3BGR,WRB"
TCGA.AA.A00N.01A	21	40720155	40984158	27	-0.4656	NEUTRAL	NA	4	"HMGN1,LCA5L,SH3BGR,WRB"
TCGA.QL.A97D	21	40742915	48084819	2830	0.1161	NEUTRAL	NA	90	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AG.4009.01A	21	40752284	43916180	243	-0.1984	NEUTRAL	NA	25	"ABCG1,B3GALT5,BACE2,C2CD2,DSCAM,FAM3B,IGSF5,LCA5L,MX1,MX2,PCP4,PLAC4,PRDM15,RIPK4,RSPH1,SH3BGR,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,UBASH3A,UMODL1,WRB,ZBTB21"
TCGA.AG.A00C.01A	21	40847030	42080353	48	-0.2858	NEUTRAL	NA	5	"B3GALT5,DSCAM,IGSF5,PCP4,SH3BGR"
TCGA.A6.6648	21	40977472	48084819	2740	-0.0411	NEUTRAL	NA	87	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AF.6672	21	41012279	44811719	1802	-0.0104	NEUTRAL	NA	31	"ABCG1,B3GALT5,BACE2,C2CD2,CBS,CRYAA,DSCAM,ERVH48-1,FAM3B,IGSF5,MX1,MX2,NDUFV3,PCP4,PDE9A,PKNOX1,PLAC4,PRDM15,RIPK4,RSPH1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,U2AF1,UBASH3A,UMODL1,WDR4,ZBTB21"
TCGA.AG.3909.01A	21	41032525	41725364	41	0.3247	NEUTRAL	NA	4	"B3GALT5,DSCAM,IGSF5,PCP4"
TCGA.CK.5914.01A	21	41033248	42775430	76	-0.2728	NEUTRAL	NA	8	"B3GALT5,BACE2,DSCAM,FAM3B,IGSF5,MX2,PCP4,PLAC4"
TCGA.AG.A008.01A	21	41163881	41459056	18	-0.1473	NEUTRAL	NA	3	"DSCAM,IGSF5,PCP4"
TCGA.AG.3891.01A	21	41239335	42710254	48	-0.2168	NEUTRAL	NA	5	"BACE2,DSCAM,FAM3B,PCP4,PLAC4"
TCGA.F4.6569	21	41324021	44264521	1431	-0.0304	NEUTRAL	NA	22	"ABCG1,BACE2,C2CD2,DSCAM,FAM3B,MX1,MX2,PDE9A,PLAC4,PRDM15,RIPK4,RSPH1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,UBASH3A,UMODL1,WDR4,ZBTB21"
TCGA.AA.A00A.01A	21	41446926	42551106	7	-0.2926	NEUTRAL	NA	3	"BACE2,DSCAM,PLAC4"
TCGA.AG.3882	21	41454052	41793993	187	-0.0763	NEUTRAL	NA	1	DSCAM
TCGA.AG.A008.01A	21	41465600	48084135	705	0.2157	NEUTRAL	NA	84	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AA.A01Q.01A	21	41516370	42551106	6	0.0602	NEUTRAL	NA	3	"BACE2,DSCAM,PLAC4"
TCGA.A6.2686	21	41610795	48084819	2333	-0.0035	NEUTRAL	NA	84	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AA.3530	21	41685420	42468839	392	-0.4973	NEUTRAL	NA	1	DSCAM
TCGA.AA.3977	21	41686138	48084819	2301	0.1653	NEUTRAL	NA	84	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AG.3909.01A	21	41740979	42852351	56	-0.2507	NEUTRAL	NA	7	"BACE2,DSCAM,FAM3B,MX1,MX2,PLAC4,TMPRSS2"
TCGA.AG.A01W.01A	21	42034061	42060043	8	0.3697	NEUTRAL	NA	1	DSCAM
TCGA.AG.A023.01A	21	42064685	48084135	591	-0.2929	NEUTRAL	NA	84	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AG.A01W.01A	21	42121571	42150308	9	0.3436	NEUTRAL	NA	1	DSCAM
TCGA.AF.3913	21	42132691	48084819	2058	-0.022	NEUTRAL	NA	84	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AG.A01W.01A	21	42152168	43152796	162	-0.1246	NEUTRAL	NA	7	"BACE2,DSCAM,FAM3B,MX1,MX2,PLAC4,TMPRSS2"
TCGA.AA.3667	21	42206583	48084819	2031	0.0104	NEUTRAL	NA	84	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.A6.3808.01A	21	42218465	42754295	27	-0.2589	NEUTRAL	NA	5	"BACE2,DSCAM,FAM3B,MX2,PLAC4"
TCGA.AG.3882	21	42221667	46220681	1491	-0.1845	NEUTRAL	NA	62	"ABCG1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM3B,HSF2BP,ICOSLG,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,MX1,MX2,NDUFV3,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,PRDM15,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,ZBTB21"
TCGA.AG.4021	21	42376162	48084819	1959	0.3272	NEUTRAL	NA	83	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AA.3530	21	42468913	48084819	1911	-0.1755	NEUTRAL	NA	83	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AA.3941	21	42480027	48084819	1904	0.1149	NEUTRAL	NA	83	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AG.A00C.01A	21	42551106	46193435	445	0.0641	NEUTRAL	NA	62	"ABCG1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM3B,HSF2BP,ICOSLG,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,MX1,MX2,NDUFV3,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,PRDM15,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,ZBTB21"
TCGA.AA.A01Q.01A	21	42552586	42824531	44	-0.2031	NEUTRAL	NA	5	"BACE2,FAM3B,MX1,MX2,PLAC4"
TCGA.AA.A00A.01A	21	42552586	45947217	393	0.3671	NEUTRAL	NA	45	"ABCG1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM3B,HSF2BP,ICOSLG,LRRC3,MX1,MX2,NDUFV3,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,PRDM15,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UMODL1,WDR4,ZBTB21"
TCGA.AA.A02E.01A	21	42553826	45651111	326	-0.3402	NEUTRAL	NA	38	"ABCG1,AGPAT3,BACE2,C21orf33,C2CD2,CBS,CRYAA,CSTB,ERVH48-1,FAM3B,HSF2BP,ICOSLG,MX1,MX2,NDUFV3,PDE9A,PDXK,PKNOX1,PLAC4,PRDM15,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,U2AF1,UBASH3A,UMODL1,WDR4,ZBTB21"
TCGA.AA.A010.01A	21	42598166	43274628	83	0.3549	NEUTRAL	NA	7	"BACE2,FAM3B,MX1,MX2,PRDM15,RIPK4,TMPRSS2"
TCGA.AG.3883	21	42647820	48084819	1817	0.0324	NEUTRAL	NA	82	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AG.3891.01A	21	42716335	42851072	37	0.17	NEUTRAL	NA	4	"FAM3B,MX1,MX2,TMPRSS2"
TCGA.CM.5348	21	42740948	48084819	1790	-0.3393	NEUTRAL	NA	80	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.CA.5797	21	42827477	48084819	1751	0.1176	NEUTRAL	NA	79	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AA.A01Q.01A	21	42830427	42866263	12	0.2183	NEUTRAL	NA	2	"MX1,TMPRSS2"
TCGA.AG.3891.01A	21	42852351	43230461	16	-0.1558	NEUTRAL	NA	3	"PRDM15,RIPK4,TMPRSS2"
TCGA.A6.3808.01A	21	42860269	45509666	326	-0.0176	NEUTRAL	NA	30	"ABCG1,AGPAT3,C2CD2,CBS,CRYAA,CSTB,ERVH48-1,HSF2BP,NDUFV3,PDE9A,PDXK,PKNOX1,PRDM15,RIPK4,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,U2AF1,UBASH3A,UMODL1,WDR4,ZBTB21"
TCGA.AA.3862.01A	21	42866263	47660673	639	-0.4031	NEUTRAL	NA	72	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRDM15,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,ZBTB21"
TCGA.AA.A01Q.01A	21	42870002	45666248	320	-0.4175	NEUTRAL	NA	34	"ABCG1,AGPAT3,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,ERVH48-1,HSF2BP,ICOSLG,NDUFV3,PDE9A,PDXK,PKNOX1,PRDM15,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,U2AF1,UBASH3A,UMODL1,WDR4,ZBTB21"
TCGA.AM.5820	21	42941136	44071638	524	0.2728	NEUTRAL	NA	13	"ABCG1,C2CD2,PRDM15,RIPK4,RSPH1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS3,UBASH3A,UMODL1,ZBTB21"
TCGA.AA.A00Q.01A	21	43160978	43274628	28	-0.0636	NEUTRAL	NA	2	"PRDM15,RIPK4"
TCGA.AA.A00L.01A	21	43160978	43319145	36	-0.5066	NEUTRAL	NA	3	"C2CD2,PRDM15,RIPK4"
TCGA.AG.3891.01A	21	43231089	43277238	16	-0.491	NEUTRAL	NA	1	PRDM15
TCGA.AG.3909.01A	21	43267148	43867150	98	-0.4163	NEUTRAL	NA	10	"ABCG1,C2CD2,PRDM15,TFF1,TFF2,TFF3,TMPRSS3,UBASH3A,UMODL1,ZBTB21"
TCGA.AA.A00Q.01A	21	43277238	43696944	35	0.339	NEUTRAL	NA	5	"ABCG1,C2CD2,PRDM15,UMODL1,ZBTB21"
TCGA.AG.3891.01A	21	43279088	44107964	124	-0.0231	NEUTRAL	NA	13	"ABCG1,C2CD2,PDE9A,PRDM15,RSPH1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS3,UBASH3A,UMODL1,ZBTB21"
TCGA.AA.3861.01A	21	43279088	46624433	463	-0.3955	NEUTRAL	NA	60	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM207A,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,NDUFV3,PDE9A,PDXK,PFKL,PKNOX1,PRDM15,PTTG1IP,PWP2,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,SUMO3,TFF1,TFF2,TFF3,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,ZBTB21"
TCGA.AG.A01W.01A	21	43306199	43347022	8	-0.1933	NEUTRAL	NA	1	C2CD2
TCGA.AA.A00L.01A	21	43321683	47754279	508	-0.1729	NEUTRAL	NA	72	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PTTG1IP,PWP2,RRP1,RRP1B,RSPH1,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AA.A02K.01A	21	43321690	48084123	808	0.0992	NEUTRAL	NA	75	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AA.3666	21	43322989	43355462	20	0.1155	NEUTRAL	NA	1	C2CD2
TCGA.AA.A00N.01A	21	43342039	43530993	19	0.3783	NEUTRAL	NA	3	"C2CD2,UMODL1,ZBTB21"
TCGA.AG.A01W.01A	21	43355463	43397442	14	-0.074	NEUTRAL	NA	1	C2CD2
TCGA.AA.3666	21	43362512	43620484	137	0.3489	NEUTRAL	NA	4	"ABCG1,C2CD2,UMODL1,ZBTB21"
TCGA.AG.A01W.01A	21	43423234	43443497	17	-0.2471	NEUTRAL	NA	1	ZBTB21
TCGA.AG.A01W.01A	21	43444084	46908551	570	0.1098	NEUTRAL	NA	59	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,CBS,COL18A1,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM207A,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,NDUFV3,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PTTG1IP,PWP2,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,SUMO3,TFF1,TFF2,TFF3,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4"
TCGA.AA.A00N.01A	21	43533636	43815381	52	-0.236	NEUTRAL	NA	6	"ABCG1,TFF1,TFF2,TFF3,TMPRSS3,UMODL1"
TCGA.AA.3666	21	43622266	43687353	26	0.0411	NEUTRAL	NA	1	ABCG1
TCGA.AA.3666	21	43688593	45673648	663	0.2701	NEUTRAL	NA	28	"ABCG1,AGPAT3,C21orf33,CBS,CRYAA,CSTB,DNMT3L,ERVH48-1,HSF2BP,ICOSLG,NDUFV3,PDE9A,PDXK,PKNOX1,PWP2,RRP1,RRP1B,RSPH1,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS3,TRAPPC10,U2AF1,UBASH3A,WDR4"
TCGA.AA.A00Q.01A	21	43702332	44299475	104	0.0261	NEUTRAL	NA	10	"ABCG1,PDE9A,RSPH1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS3,UBASH3A,WDR4"
TCGA.AA.A024.01A	21	43711568	48084135	548	0.1311	NEUTRAL	NA	72	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,WDR4,YBEY"
TCGA.CK.5914.01A	21	43733605	43864647	35	-0.3995	NEUTRAL	NA	5	"TFF1,TFF2,TFF3,TMPRSS3,UBASH3A"
TCGA.F5.6810	21	43751908	44028846	141	0.3315	NEUTRAL	NA	6	"RSPH1,SLC37A1,TFF1,TFF2,TMPRSS3,UBASH3A"
TCGA.AG.4009.01A	21	43959575	44185444	28	-0.0466	NEUTRAL	NA	2	"PDE9A,SLC37A1"
TCGA.D5.6533	21	43960076	44918787	336	-0.0226	NEUTRAL	NA	10	"CBS,CRYAA,ERVH48-1,NDUFV3,PDE9A,PKNOX1,SIK1,SLC37A1,U2AF1,WDR4"
TCGA.AA.A010.01A	21	43962461	44482364	64	0.053	NEUTRAL	NA	7	"CBS,ERVH48-1,NDUFV3,PDE9A,PKNOX1,SLC37A1,WDR4"
TCGA.AM.5820	21	44101126	44266410	54	0.2902	NEUTRAL	NA	2	"PDE9A,WDR4"
TCGA.AG.3891.01A	21	44117466	44524372	56	0.2439	NEUTRAL	NA	7	"CBS,ERVH48-1,NDUFV3,PDE9A,PKNOX1,U2AF1,WDR4"
TCGA.CA.6719	21	44177437	48084819	1120	-0.2702	NEUTRAL	NA	64	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SIK1,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBE2G2,WDR4,YBEY"
TCGA.F4.6569	21	44266410	48084819	1102	-0.4747	NEUTRAL	NA	63	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PCNT,PDXK,PFKL,PKNOX1,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SIK1,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBE2G2,WDR4,YBEY"
TCGA.AG.4009.01A	21	44270108	44482364	28	-0.0599	NEUTRAL	NA	5	"CBS,ERVH48-1,NDUFV3,PKNOX1,WDR4"
TCGA.D5.6931	21	44275978	48084819	1095	-0.0731	NEUTRAL	NA	63	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PCNT,PDXK,PFKL,PKNOX1,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SIK1,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBE2G2,WDR4,YBEY"
TCGA.AM.5820	21	44293743	44456889	52	0.0417	NEUTRAL	NA	4	"ERVH48-1,NDUFV3,PKNOX1,WDR4"
TCGA.AA.A00Q.01A	21	44438194	44592141	29	0.1718	NEUTRAL	NA	4	"CBS,CRYAA,PKNOX1,U2AF1"
TCGA.AA.A010.01A	21	44527495	44836581	8	0.0582	NEUTRAL	NA	3	"CRYAA,SIK1,U2AF1"
TCGA.AG.3909.01A	21	44579303	45053102	16	-0.1661	NEUTRAL	NA	3	"CRYAA,HSF2BP,SIK1"
TCGA.AG.3891.01A	21	44589163	44840096	6	-0.4541	NEUTRAL	NA	2	"CRYAA,SIK1"
TCGA.AF.6672	21	44815867	48084819	921	-0.3972	NEUTRAL	NA	56	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,COL18A1,COL6A1,COL6A2,CSTB,DIP2A,DNMT3L,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PDXK,PFKL,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SIK1,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AA.A01S	21	44828030	48084819	916	-0.00775	NEUTRAL	NA	56	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,COL18A1,COL6A1,COL6A2,CSTB,DIP2A,DNMT3L,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PDXK,PFKL,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SIK1,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AG.3891.01A	21	44840873	45757444	131	0.0959	NEUTRAL	NA	15	"AGPAT3,AIRE,C21orf2,C21orf33,CSTB,DNMT3L,HSF2BP,ICOSLG,PDXK,PFKL,PWP2,RRP1,RRP1B,SIK1,TRAPPC10"
TCGA.CK.5914.01A	21	44845855	45079528	10	-0.0609	NEUTRAL	NA	3	"HSF2BP,RRP1B,SIK1"
TCGA.AA.3524	21	44848069	48084819	912	-0.0346	NEUTRAL	NA	55	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,COL18A1,COL6A1,COL6A2,CSTB,DIP2A,DNMT3L,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PDXK,PFKL,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AA.3529	21	44848069	48084819	912	-0.0183	NEUTRAL	NA	55	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,COL18A1,COL6A1,COL6A2,CSTB,DIP2A,DNMT3L,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PDXK,PFKL,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AA.A010.01A	21	44949602	45139143	25	-0.3007	NEUTRAL	NA	3	"HSF2BP,PDXK,RRP1B"
TCGA.AA.3939.01A	21	45076416	46285238	244	-0.0888	NEUTRAL	NA	36	"AGPAT3,AIRE,C21orf2,C21orf33,CSTB,DNMT3L,HSF2BP,ICOSLG,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,PDXK,PFKL,PTTG1IP,PWP2,RRP1,RRP1B,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2"
TCGA.D5.5541	21	45085034	48084819	861	-0.4808	NEUTRAL	NA	54	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,COL18A1,COL6A1,COL6A2,CSTB,DIP2A,DNMT3L,FAM207A,FTCD,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PDXK,PFKL,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AG.3909.01A	21	45106634	45175803	14	-0.1682	NEUTRAL	NA	2	"PDXK,RRP1B"
TCGA.AA.A00Q.01A	21	45170307	45564654	61	0.0905	NEUTRAL	NA	7	"AGPAT3,C21orf33,CSTB,PDXK,PWP2,RRP1,TRAPPC10"
TCGA.AG.4009.01A	21	45220683	45950875	119	-0.3504	NEUTRAL	NA	13	"AGPAT3,AIRE,C21orf2,C21orf33,DNMT3L,ICOSLG,LRRC3,PFKL,PWP2,RRP1,TRAPPC10,TRPM2,TSPEAR"
TCGA.AA.A010.01A	21	45223372	45553921	54	0.131	NEUTRAL	NA	5	"AGPAT3,C21orf33,PWP2,RRP1,TRAPPC10"
TCGA.AG.3909.01A	21	45451926	45534010	26	-0.2357	NEUTRAL	NA	2	"PWP2,TRAPPC10"
TCGA.AG.3906.01A	21	45651111	45757444	24	-0.1217	NEUTRAL	NA	5	"AIRE,C21orf2,DNMT3L,ICOSLG,PFKL"
TCGA.AG.3909.01A	21	45658252	45845523	48	-0.1385	NEUTRAL	NA	6	"AIRE,C21orf2,DNMT3L,ICOSLG,PFKL,TRPM2"
TCGA.AA.A02R.01A	21	45666248	48084135	226	-0.1693	NEUTRAL	NA	45	"ADARB1,AIRE,C21orf2,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,DNMT3L,FAM207A,FTCD,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PFKL,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AA.A01Q.01A	21	45668854	45733789	23	0.301	NEUTRAL	NA	3	"AIRE,DNMT3L,PFKL"
TCGA.AA.A02E.01A	21	45668854	48084135	261	-0.3019	NEUTRAL	NA	45	"ADARB1,AIRE,C21orf2,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,DNMT3L,FAM207A,FTCD,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PFKL,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AA.A00Q.01A	21	45742787	45757444	11	0.1314	NEUTRAL	NA	2	"C21orf2,PFKL"
TCGA.AG.3891.01A	21	45773533	46117710	71	-0.3138	NEUTRAL	NA	19	"KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,TRPM2,TSPEAR"
TCGA.AA.A01Q.01A	21	45786600	45811125	8	0.29	NEUTRAL	NA	1	TRPM2
TCGA.AA.A010.01A	21	45786600	45856893	26	-0.1947	NEUTRAL	NA	1	TRPM2
TCGA.A6.3808.01A	21	45843485	45959421	29	-0.3822	NEUTRAL	NA	4	"KRTAP10-1,LRRC3,TRPM2,TSPEAR"
TCGA.AA.A00Q.01A	21	45846853	45876519	7	-0.1562	NEUTRAL	NA	2	"LRRC3,TRPM2"
TCGA.AG.3906.01A	21	45858898	45929034	6	-0.0959	NEUTRAL	NA	3	"LRRC3,TRPM2,TSPEAR"
TCGA.A6.6137	21	45905871	45936498	10	-0.4537	NEUTRAL	NA	1	TSPEAR
TCGA.A6.6137	21	45937157	48084819	654	-0.0139	NEUTRAL	NA	39	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FAM207A,FTCD,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,TSPEAR,UBE2G2,YBEY"
TCGA.AA.A010.01A	21	45941728	45950875	6	-0.3767	NEUTRAL	NA	1	TSPEAR
TCGA.AA.A00A.01A	21	45948288	46193435	19	-0.083	NEUTRAL	NA	18	"KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,TSPEAR,UBE2G2"
TCGA.AA.A01Q.01A	21	45948288	46276066	41	0.1786	NEUTRAL	NA	20	"KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,PTTG1IP,SUMO3,TSPEAR,UBE2G2"
TCGA.AG.4009.01A	21	45959145	46193435	36	0.1046	NEUTRAL	NA	18	"KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,TSPEAR,UBE2G2"
TCGA.AA.A00D.01A	21	45970544	46193435	15	-0.0117	NEUTRAL	NA	17	"KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,TSPEAR,UBE2G2"
TCGA.AA.A00Q.01A	21	45977891	46355491	49	0.0344	NEUTRAL	NA	19	"ITGB2,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,PTTG1IP,SUMO3,TSPEAR,UBE2G2"
TCGA.AA.A010.01A	21	45987629	46021220	12	0.0434	NEUTRAL	NA	5	"KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,TSPEAR"
TCGA.AZ.4681	21	46003899	46121816	54	-0.056	NEUTRAL	NA	12	"KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,TSPEAR"
TCGA.AZ.4681	21	46149140	48084819	561	0.0076	NEUTRAL	NA	22	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FAM207A,FTCD,ITGB2,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,UBE2G2,YBEY"
TCGA.AA.A010.01A	21	46191243	46221566	5	-0.3932	NEUTRAL	NA	1	UBE2G2
TCGA.AG.3891.01A	21	46191243	46363569	28	0.0504	NEUTRAL	NA	5	"FAM207A,ITGB2,PTTG1IP,SUMO3,UBE2G2"
TCGA.AG.4009.01A	21	46197167	46645370	40	-0.4371	NEUTRAL	NA	6	"ADARB1,FAM207A,ITGB2,PTTG1IP,SUMO3,UBE2G2"
TCGA.AA.A00A.01A	21	46197167	48084135	196	0.3661	NEUTRAL	NA	22	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FAM207A,FTCD,ITGB2,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,UBE2G2,YBEY"
TCGA.DC.6158	21	46200580	48084819	534	-0.0929	NEUTRAL	NA	22	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FAM207A,FTCD,ITGB2,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,UBE2G2,YBEY"
TCGA.AA.A010.01A	21	46271422	46359923	26	-0.4428	NEUTRAL	NA	2	"ITGB2,PTTG1IP"
TCGA.AG.A00C.01A	21	46306601	46641906	25	-0.0533	NEUTRAL	NA	3	"ADARB1,FAM207A,ITGB2"
TCGA.AA.3939.01A	21	46323233	46645370	26	0.1244	NEUTRAL	NA	3	"ADARB1,FAM207A,ITGB2"
TCGA.AA.A01Q.01A	21	46359923	46641906	13	0.2239	NEUTRAL	NA	2	"ADARB1,FAM207A"
TCGA.AG.3891.01A	21	46379961	47648326	112	-0.2923	NEUTRAL	NA	11	"ADARB1,COL18A1,COL6A1,COL6A2,FAM207A,FTCD,LSS,PCBP3,POFUT2,SLC19A1,SPATC1L"
TCGA.AA.3930.01A	21	46386902	47633601	147	-0.4927	NEUTRAL	NA	11	"ADARB1,COL18A1,COL6A1,COL6A2,FAM207A,FTCD,LSS,PCBP3,POFUT2,SLC19A1,SPATC1L"
TCGA.AA.3681	21	46492269	48084819	445	-0.0233	NEUTRAL	NA	17	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AA.3696	21	46492269	48084819	445	-0.0585	NEUTRAL	NA	17	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AA.3715	21	46492269	48084819	445	-0.0262	NEUTRAL	NA	17	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AG.3592	21	46492269	48084819	445	-0.0921	NEUTRAL	NA	17	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AG.3909.01A	21	46554633	46641906	10	-0.0754	NEUTRAL	NA	1	ADARB1
TCGA.DC.4749	21	46584075	48084819	415	-0.1152	NEUTRAL	NA	17	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AG.3906.01A	21	46685359	46841244	9	0.0763	NEUTRAL	NA	2	"COL18A1,POFUT2"
TCGA.AA.3939.01A	21	46685359	47608445	119	-0.445	NEUTRAL	NA	9	"COL18A1,COL6A1,COL6A2,FTCD,LSS,PCBP3,POFUT2,SLC19A1,SPATC1L"
TCGA.AA.3666	21	46714640	48084819	364	0.0069	NEUTRAL	NA	15	"C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.CK.6748	21	46768529	48084819	356	-0.0826	NEUTRAL	NA	15	"C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AA.A01Q.01A	21	46842277	47406869	16	0.2375	NEUTRAL	NA	4	"COL18A1,COL6A1,PCBP3,SLC19A1"
TCGA.AF.2692	21	46871471	48084819	323	-0.1172	NEUTRAL	NA	15	"C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AG.4009.01A	21	46875998	47418259	36	-0.3091	NEUTRAL	NA	4	"COL18A1,COL6A1,PCBP3,SLC19A1"
TCGA.AA.3693	21	46894020	48084627	318	-0.0426	NEUTRAL	NA	15	"C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AG.3909.01A	21	46907311	47642511	72	-0.3304	NEUTRAL	NA	8	"COL18A1,COL6A1,COL6A2,FTCD,LSS,PCBP3,SLC19A1,SPATC1L"
TCGA.AM.5820	21	47067743	47275632	49	0.1244	NEUTRAL	NA	1	PCBP3
TCGA.AG.A00C.01A	21	47330806	47636256	43	-0.0945	NEUTRAL	NA	6	"COL6A1,COL6A2,FTCD,LSS,PCBP3,SPATC1L"
TCGA.AA.A01Q.01A	21	47407352	47423343	21	-0.2953	NEUTRAL	NA	1	COL6A1
TCGA.AG.3906.01A	21	47420165	47423343	6	0.3423	NEUTRAL	NA	1	COL6A1
TCGA.AH.6897	21	47427838	48084819	183	0.293	NEUTRAL	NA	11	"C21orf58,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCNT,PRMT2,S100B,SPATC1L,YBEY"
TCGA.AA.A01Q.01A	21	47531344	47616049	32	0.2629	NEUTRAL	NA	4	"COL6A2,FTCD,LSS,SPATC1L"
TCGA.AG.4009.01A	21	47532632	47693251	57	-0.3667	NEUTRAL	NA	5	"COL6A2,FTCD,LSS,MCM3AP,SPATC1L"
TCGA.AA.3967.01A	21	47570033	47865117	106	-0.1468	NEUTRAL	NA	7	"C21orf58,FTCD,LSS,MCM3AP,PCNT,SPATC1L,YBEY"
TCGA.AA.A010.01A	21	47581386	47693251	48	-0.039	NEUTRAL	NA	3	"LSS,MCM3AP,SPATC1L"
TCGA.AA.3939.01A	21	47610977	48084135	156	-0.1078	NEUTRAL	NA	8	"C21orf58,DIP2A,LSS,MCM3AP,PCNT,PRMT2,S100B,YBEY"
TCGA.A6.3808.01A	21	47611733	47699867	45	0.0419	NEUTRAL	NA	2	"LSS,MCM3AP"
TCGA.AA.A01Q.01A	21	47625723	47766640	62	-0.4105	NEUTRAL	NA	5	"C21orf58,LSS,MCM3AP,PCNT,YBEY"
TCGA.EF.5830	21	47632994	48084819	140	0.0068	NEUTRAL	NA	8	"C21orf58,DIP2A,LSS,MCM3AP,PCNT,PRMT2,S100B,YBEY"
TCGA.AA.3930.01A	21	47635057	48084135	144	-0.0203	NEUTRAL	NA	8	"C21orf58,DIP2A,LSS,MCM3AP,PCNT,PRMT2,S100B,YBEY"
TCGA.AG.A00C.01A	21	47639352	47865117	79	0.3221	NEUTRAL	NA	5	"C21orf58,LSS,MCM3AP,PCNT,YBEY"
TCGA.AM.5820	21	47642322	47874267	53	0.1411	NEUTRAL	NA	5	"C21orf58,LSS,MCM3AP,PCNT,YBEY"
TCGA.AG.3891.01A	21	47655140	47810547	54	0.1299	NEUTRAL	NA	4	"C21orf58,MCM3AP,PCNT,YBEY"
TCGA.AA.3861.01A	21	47662666	48084135	126	0.0014	NEUTRAL	NA	7	"C21orf58,DIP2A,MCM3AP,PCNT,PRMT2,S100B,YBEY"
TCGA.AA.3862.01A	21	47662666	48084135	131	0.1047	NEUTRAL	NA	7	"C21orf58,DIP2A,MCM3AP,PCNT,PRMT2,S100B,YBEY"
TCGA.A6.3810.01A	21	47699867	47801582	34	-0.3384	NEUTRAL	NA	4	"C21orf58,MCM3AP,PCNT,YBEY"
TCGA.DC.4745	21	47711670	48084819	112	-0.2097	NEUTRAL	NA	6	"C21orf58,DIP2A,PCNT,PRMT2,S100B,YBEY"
TCGA.F5.6810	21	47724701	48084819	109	0.3419	NEUTRAL	NA	5	"C21orf58,DIP2A,PCNT,PRMT2,S100B"
TCGA.AA.A00L.01A	21	47765983	47822248	23	0.2347	NEUTRAL	NA	1	PCNT
TCGA.AG.4009.01A	21	47766640	47811048	17	-0.0487	NEUTRAL	NA	1	PCNT
TCGA.AA.A010.01A	21	47772968	47855806	29	-0.2601	NEUTRAL	NA	1	PCNT
TCGA.A6.3810.01A	21	47805696	48084135	80	-0.0633	NEUTRAL	NA	4	"DIP2A,PCNT,PRMT2,S100B"
TCGA.AG.3891.01A	21	47811048	47855806	17	-0.2421	NEUTRAL	NA	1	PCNT
TCGA.AG.4009.01A	21	47817130	48069470	63	-0.401	NEUTRAL	NA	4	"DIP2A,PCNT,PRMT2,S100B"
TCGA.EI.6885	21	47821587	48084819	95	0.2047	NEUTRAL	NA	4	"DIP2A,PCNT,PRMT2,S100B"
TCGA.AA.A00L.01A	21	47831056	48084135	38	-0.2599	NEUTRAL	NA	4	"DIP2A,PCNT,PRMT2,S100B"
TCGA.AA.A01Q.01A	21	47841846	48084135	33	-0.2725	NEUTRAL	NA	4	"DIP2A,PCNT,PRMT2,S100B"
TCGA.AG.3891.01A	21	47856843	47904619	9	0.2817	NEUTRAL	NA	2	"DIP2A,PCNT"
TCGA.AM.5820	21	47881308	47964134	33	-0.2556	NEUTRAL	NA	1	DIP2A
TCGA.AG.3909.01A	21	47904619	47987241	33	-0.27	NEUTRAL	NA	1	DIP2A
TCGA.A6.3808.01A	21	47904619	48084135	49	-0.2222	NEUTRAL	NA	3	"DIP2A,PRMT2,S100B"
TCGA.AG.A00C.01A	21	47904619	48084135	46	-0.2309	NEUTRAL	NA	3	"DIP2A,PRMT2,S100B"
TCGA.AA.A00N.01A	21	47910463	47987241	34	0.2749	NEUTRAL	NA	1	DIP2A
TCGA.AG.3891.01A	21	47910463	48084135	44	-0.2463	NEUTRAL	NA	3	"DIP2A,PRMT2,S100B"
TCGA.AG.A01J.01A	21	47981613	48084135	17	-0.1481	NEUTRAL	NA	3	"DIP2A,PRMT2,S100B"
TCGA.AM.5820	21	48019867	48084819	22	0.0717	NEUTRAL	NA	2	"PRMT2,S100B"
TCGA.AA.3979	21	48084627	48084819	3	0.0357	NEUTRAL	NA	1	PRMT2
TCGA.AY.4071	21	48084627	48084819	3	-0.3381	NEUTRAL	NA	1	PRMT2
TCGA.CK.4952.01A	22	14638257	19810544	586	-0.0856	NEUTRAL	NA	37	"ATP6V1E1,BCL2L13,BID,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,DGCR14,DGCR2,DGCR6,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,SEPT5,SLC25A1,SLC25A18,TBX1,TSSK2,TUBA8,UFD1L,USP18,XKR3"
TCGA.F5.6811.01A	22	14638257	49570460	3956	-0.0363	NEUTRAL	NA	391	Too-Many
TCGA.AG.A01W.01A	22	14646948	16003909	39	0.3049	NEUTRAL	NA	0	None
TCGA.AG.A036.01A	22	14646948	49567435	3678	-0.0745	NEUTRAL	NA	391	Too-Many
TCGA.AG.A01W.01A	22	16005864	16564983	54	-0.3192	NEUTRAL	NA	2	"OR11H1,POTEH"
TCGA.CM.6163	22	16055206	16894089	9	-0.2017	NEUTRAL	NA	2	"OR11H1,POTEH"
TCGA.CM.6679	22	16055206	17023513	12	-0.19375	NEUTRAL	NA	2	"OR11H1,POTEH"
TCGA.AA.3530	22	16055206	17285048	37	-0.0067	NEUTRAL	NA	4	"CCT8L2,OR11H1,POTEH,XKR3"
TCGA.AA.3864	22	16055206	17285048	36	-0.0132	NEUTRAL	NA	4	"CCT8L2,OR11H1,POTEH,XKR3"
TCGA.AA.3982	22	16055206	17313797	51	-0.0978	NEUTRAL	NA	4	"CCT8L2,OR11H1,POTEH,XKR3"
TCGA.AA.3850	22	16055206	17319155	60	-0.06045	NEUTRAL	NA	4	"CCT8L2,OR11H1,POTEH,XKR3"
TCGA.AA.3955	22	16055206	17760349	204	0.0749	NEUTRAL	NA	9	"CCT8L2,CECR1,CECR5,CECR6,GAB4,IL17RA,OR11H1,POTEH,XKR3"
TCGA.AA.3558	22	16055206	17892370	262	0.0657	NEUTRAL	NA	10	"CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,OR11H1,POTEH,XKR3"
TCGA.AA.3872	22	16055206	18626899	566	0.033	NEUTRAL	NA	18	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,OR11H1,PEX26,POTEH,SLC25A18,TUBA8,XKR3"
TCGA.AY.4071	22	16055206	18655859	571	0.0036	NEUTRAL	NA	19	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,OR11H1,PEX26,POTEH,SLC25A18,TUBA8,USP18,XKR3"
TCGA.A6.6781	22	16055206	18904837	545	-0.0347	NEUTRAL	NA	21	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,DGCR6,GAB4,IL17RA,LOC101929372,MICAL3,OR11H1,PEX26,POTEH,PRODH,SLC25A18,TUBA8,USP18,XKR3"
TCGA.A6.5657	22	16055206	19348198	704	-0.1869	NEUTRAL	NA	28	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,CLTCL1,DGCR14,DGCR2,DGCR6,GAB4,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,OR11H1,PEX26,POTEH,PRODH,SLC25A1,SLC25A18,TSSK2,TUBA8,USP18,XKR3"
TCGA.CI.6621	22	16055206	19779414	820	0.0967	NEUTRAL	NA	37	"ATP6V1E1,BCL2L13,BID,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,DGCR14,DGCR2,DGCR6,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,SEPT5,SLC25A1,SLC25A18,TBX1,TSSK2,TUBA8,UFD1L,USP18,XKR3"
TCGA.QG.A5Z1	22	16055206	20844353	1013	-0.0112	NEUTRAL	NA	54	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8,ZNF74"
TCGA.CI.6619	22	16055206	20950563	1047	-0.1532	NEUTRAL	NA	55	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,MED15,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8,ZNF74"
TCGA.DM.A1D0	22	16055206	22111284	1232	0.0004	NEUTRAL	NA	75	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,XKR3,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.AD.6890	22	16055206	22332040	1286	-0.047	NEUTRAL	NA	78	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PPM1F,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,XKR3,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.DM.A28F	22	16055206	22927653	1513	0.3139	NEUTRAL	NA	82	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PPM1F,PRAME,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF74"
TCGA.AF.2693	22	16055206	23713808	1697	-0.0895	NEUTRAL	NA	88	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BCR,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GGTLC2,GNAZ,GNB1L,GP1BB,GSC2,HIC2,HIRA,IGLL5,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PPM1F,PRAME,PRODH,RAB36,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RSPH14,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF74"
TCGA.AA.3679	22	16055206	24174302	1833	-0.0076	NEUTRAL	NA	97	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BCR,BID,C22orf15,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CHCHD10,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,DRICH1,GAB4,GGTLC2,GNAZ,GNB1L,GP1BB,GSC2,HIC2,HIRA,IGLL1,IGLL5,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MMP11,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PPM1F,PRAME,PRODH,RAB36,RANBP1,RGL4,RIMBP3,RIMBP3B,RIMBP3C,RSPH14,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SMARCB1,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,VPREB3,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF70,ZNF74"
TCGA.AA.3814	22	16055206	25641024	2210	0.0263	NEUTRAL	NA	122	Too-Many
TCGA.NH.A8F7	22	16055206	25661375	2204	-0.0372	NEUTRAL	NA	122	Too-Many
TCGA.AA.3655	22	16055206	25661697	2221	-0.0285	NEUTRAL	NA	122	Too-Many
TCGA.A6.6141	22	16055206	25748685	2231	-0.0709	NEUTRAL	NA	123	Too-Many
TCGA.EI.7004	22	16055206	25755598	2229	-0.378	NEUTRAL	NA	123	Too-Many
TCGA.F4.6569	22	16055206	25755598	2237	-0.0846	NEUTRAL	NA	123	Too-Many
TCGA.AA.3517	22	16055206	26404374	2535	-0.344	NEUTRAL	NA	125	Too-Many
TCGA.AA.3549	22	16055206	26437820	2566	0.0564	NEUTRAL	NA	125	Too-Many
TCGA.AG.3584	22	16055206	26438106	2567	-0.0575	NEUTRAL	NA	125	Too-Many
TCGA.AA.3831	22	16055206	26438494	2565	0.024	NEUTRAL	NA	125	Too-Many
TCGA.AD.6889	22	16055206	27049031	2877	-0.1021	NEUTRAL	NA	133	Too-Many
TCGA.AZ.6599	22	16055206	27424747	3111	-0.1061	NEUTRAL	NA	133	Too-Many
TCGA.AD.6965	22	16055206	27913011	3496	-0.4626	NEUTRAL	NA	133	Too-Many
TCGA.A6.6653	22	16055206	28093391	3624	-0.0444	NEUTRAL	NA	133	Too-Many
TCGA.AA.3819	22	16055206	29378886	3879	0.0021	NEUTRAL	NA	141	Too-Many
TCGA.A6.6649	22	16055206	29439200	3907	-0.2843	NEUTRAL	NA	141	Too-Many
TCGA.D5.6920	22	16055206	29474276	3920	-0.0299	NEUTRAL	NA	143	Too-Many
TCGA.G4.6298	22	16055206	30820076	4245	-0.0031	NEUTRAL	NA	168	Too-Many
TCGA.CA.5256	22	16055206	30853081	4226	-0.0256	NEUTRAL	NA	169	Too-Many
TCGA.AA.3844	22	16055206	32104200	4527	0.1502	NEUTRAL	NA	192	Too-Many
TCGA.AA.3811	22	16055206	33533718	5102	0.1292	NEUTRAL	NA	205	Too-Many
TCGA.AA.3715	22	16055206	33733526	5203	0.1389	NEUTRAL	NA	206	Too-Many
TCGA.AZ.4308	22	16055206	33820349	5233	-0.0195	NEUTRAL	NA	206	Too-Many
TCGA.AD.6548	22	16055206	34058811	5330	-0.0332	NEUTRAL	NA	206	Too-Many
TCGA.F4.6459	22	16055206	34208283	5441	-0.0779	NEUTRAL	NA	206	Too-Many
TCGA.CA.5796	22	16055206	34510914	5586	-0.272	NEUTRAL	NA	206	Too-Many
TCGA.CA.5797	22	16055206	34631749	5651	0.1182	NEUTRAL	NA	206	Too-Many
TCGA.G4.6294	22	16055206	36541824	6398	-0.0761	NEUTRAL	NA	217	Too-Many
TCGA.A6.2678	22	16055206	36913785	6513	-0.1137	NEUTRAL	NA	224	Too-Many
TCGA.AA.3688	22	16055206	37637652	6823	0.0114	NEUTRAL	NA	238	Too-Many
TCGA.AA.3975	22	16055206	37722300	6839	0.0249	NEUTRAL	NA	239	Too-Many
TCGA.AA.A01T	22	16055206	37722300	6842	-0.2452	NEUTRAL	NA	239	Too-Many
TCGA.AZ.6605	22	16055206	37722300	6829	-0.1001	NEUTRAL	NA	239	Too-Many
TCGA.D5.6923	22	16055206	37722300	6839	0.0392	NEUTRAL	NA	239	Too-Many
TCGA.F4.6460	22	16055206	37722300	6855	-0.3704	NEUTRAL	NA	239	Too-Many
TCGA.G4.6303	22	16055206	40362945	7402	0.2348	NEUTRAL	NA	300	Too-Many
TCGA.DY.A1H8	22	16055206	41124485	7519	-0.0041	NEUTRAL	NA	306	Too-Many
TCGA.A6.5660	22	16055206	42243019	7664	-0.1511	NEUTRAL	NA	330	Too-Many
TCGA.D5.5539	22	16055206	42369094	7691	-0.0986	NEUTRAL	NA	333	Too-Many
TCGA.CI.6624	22	16055206	42487899	7727	-0.1607	NEUTRAL	NA	339	Too-Many
TCGA.D5.6534	22	16055206	42633053	7756	-0.1986	NEUTRAL	NA	341	Too-Many
TCGA.A6.5665	22	16055206	42667593	7757	-0.2624	NEUTRAL	NA	341	Too-Many
TCGA.AA.3522	22	16055206	42932316	7822	-0.385	NEUTRAL	NA	343	Too-Many
TCGA.A6.6648	22	16055206	43097513	7877	-0.0018	NEUTRAL	NA	348	Too-Many
TCGA.EI.7002	22	16055206	44204318	8231	-0.034	NEUTRAL	NA	358	Too-Many
TCGA.A6.A56B	22	16055206	44388207	8267	-0.4971	NEUTRAL	NA	362	Too-Many
TCGA.5M.AAT4	22	16055206	44795894	8520	-0.4906	NEUTRAL	NA	365	Too-Many
TCGA.EI.6508	22	16055206	45091374	8655	-0.0648	NEUTRAL	NA	367	Too-Many
TCGA.DM.A285	22	16055206	45253672	8724	-0.1668	NEUTRAL	NA	369	Too-Many
TCGA.AA.3979	22	16055206	46820569	9219	0.0158	NEUTRAL	NA	387	Too-Many
TCGA.CA.5254	22	16055206	47302306	9407	-0.0521	NEUTRAL	NA	390	Too-Many
TCGA.D5.6926	22	16055206	48752396	10212	-0.0251	NEUTRAL	NA	390	Too-Many
TCGA.AA.3877	22	16055206	48842335	10288	0.017	NEUTRAL	NA	390	Too-Many
TCGA.AG.3594	22	16055206	48936757	10327	0.0149	NEUTRAL	NA	391	Too-Many
TCGA.AA.3858	22	16055206	49851211	10865	-0.0112	NEUTRAL	NA	391	Too-Many
TCGA.AA.3971	22	16055206	49851211	10863	0.0341	NEUTRAL	NA	391	Too-Many
TCGA.AA.3848	22	16055206	50216753	11006	-0.289	NEUTRAL	NA	393	Too-Many
TCGA.AA.A03J	22	16055206	51175625	10889	-0.3117	NEUTRAL	NA	425	Too-Many
TCGA.3L.AA1B	22	16055206	51186227	11153	-0.1963	NEUTRAL	NA	426	Too-Many
TCGA.4T.AA8H	22	16055206	51186227	11150	-0.0529	NEUTRAL	NA	426	Too-Many
TCGA.5M.AAT5	22	16055206	51186227	11149	-0.3672	NEUTRAL	NA	426	Too-Many
TCGA.5M.AAT6	22	16055206	51186227	11146	0.0085	NEUTRAL	NA	426	Too-Many
TCGA.5M.AATA	22	16055206	51186227	11144	-0.1995	NEUTRAL	NA	426	Too-Many
TCGA.5M.AATE	22	16055206	51186227	11151	-0.1283	NEUTRAL	NA	426	Too-Many
TCGA.A6.2674	22	16055206	51186227	11146	-0.0275	NEUTRAL	NA	426	Too-Many
TCGA.A6.2675	22	16055206	51186227	11093	-0.0738	NEUTRAL	NA	426	Too-Many
TCGA.A6.2677	22	16055206	51186227	10449	-0.0595	NEUTRAL	NA	426	Too-Many
TCGA.A6.2679	22	16055206	51186227	11147	-0.2879	NEUTRAL	NA	426	Too-Many
TCGA.A6.2680	22	16055206	51186227	11136	-0.3844	NEUTRAL	NA	426	Too-Many
TCGA.A6.2681	22	16055206	51186227	11151	-0.4833	NEUTRAL	NA	426	Too-Many
TCGA.A6.2682	22	16055206	51186227	10971	-0.0785	NEUTRAL	NA	426	Too-Many
TCGA.A6.2683	22	16055206	51186227	11140	-0.3622	NEUTRAL	NA	426	Too-Many
TCGA.A6.2684	22	16055206	51186227	10441	-0.0588	NEUTRAL	NA	426	Too-Many
TCGA.A6.2686	22	16055206	51186227	11142	-0.0104	NEUTRAL	NA	426	Too-Many
TCGA.A6.3807	22	16055206	51186227	11113	-0.3553	NEUTRAL	NA	426	Too-Many
TCGA.A6.3809	22	16055206	51186227	10458	-0.0331	NEUTRAL	NA	426	Too-Many
TCGA.A6.4105	22	16055206	51186227	11160	-0.3817	NEUTRAL	NA	426	Too-Many
TCGA.A6.4107	22	16055206	51186227	11147	0.0433	NEUTRAL	NA	426	Too-Many
TCGA.A6.5659	22	16055206	51186227	10417	-0.2657	NEUTRAL	NA	426	Too-Many
TCGA.A6.5664	22	16055206	51186227	11130	-0.0031	NEUTRAL	NA	426	Too-Many
TCGA.A6.5666	22	16055206	51186227	11149	0.0508	NEUTRAL	NA	426	Too-Many
TCGA.A6.5667	22	16055206	51186227	11148	-0.0538	NEUTRAL	NA	426	Too-Many
TCGA.A6.6137	22	16055206	51186227	11162	-0.0276	NEUTRAL	NA	426	Too-Many
TCGA.A6.6140	22	16055206	51186227	11164	0.1278	NEUTRAL	NA	426	Too-Many
TCGA.A6.6651	22	16055206	51186227	11134	-0.0349	NEUTRAL	NA	426	Too-Many
TCGA.A6.6652	22	16055206	51186227	11162	-0.0366	NEUTRAL	NA	426	Too-Many
TCGA.A6.6654	22	16055206	51186227	11145	-0.1177	NEUTRAL	NA	426	Too-Many
TCGA.A6.6780	22	16055206	51186227	11133	0.0169	NEUTRAL	NA	426	Too-Many
TCGA.A6.6782	22	16055206	51186227	11131	0.0656	NEUTRAL	NA	426	Too-Many
TCGA.A6.A565	22	16055206	51186227	11093	-0.0782	NEUTRAL	NA	426	Too-Many
TCGA.A6.A566	22	16055206	51186227	11074	-0.0019	NEUTRAL	NA	426	Too-Many
TCGA.AA.3488	22	16055206	51186227	11152	0.0499	NEUTRAL	NA	426	Too-Many
TCGA.AA.3492	22	16055206	51186227	11151	0.017	NEUTRAL	NA	426	Too-Many
TCGA.AA.3496	22	16055206	51186227	11123	0.0586	NEUTRAL	NA	426	Too-Many
TCGA.AA.3502	22	16055206	51186227	11151	-0.0519	NEUTRAL	NA	426	Too-Many
TCGA.AA.3510	22	16055206	51186227	11146	0.0185	NEUTRAL	NA	426	Too-Many
TCGA.AA.3511	22	16055206	51186227	11143	-0.244	NEUTRAL	NA	426	Too-Many
TCGA.AA.3514	22	16055206	51186227	11146	0.0459	NEUTRAL	NA	426	Too-Many
TCGA.AA.3516	22	16055206	51186227	11127	0.0439	NEUTRAL	NA	426	Too-Many
TCGA.AA.3518	22	16055206	51186227	11109	0.0223	NEUTRAL	NA	426	Too-Many
TCGA.AA.3519	22	16055206	51186227	11148	-0.3263	NEUTRAL	NA	426	Too-Many
TCGA.AA.3524	22	16055206	51186227	11132	-0.066	NEUTRAL	NA	426	Too-Many
TCGA.AA.3526	22	16055206	51186227	11147	-0.0068	NEUTRAL	NA	426	Too-Many
TCGA.AA.3527	22	16055206	51186227	11145	0.0004	NEUTRAL	NA	426	Too-Many
TCGA.AA.3529	22	16055206	51186227	11143	-0.0199	NEUTRAL	NA	426	Too-Many
TCGA.AA.3531	22	16055206	51186227	11143	0.0024	NEUTRAL	NA	426	Too-Many
TCGA.AA.3532	22	16055206	51186227	11145	-0.2845	NEUTRAL	NA	426	Too-Many
TCGA.AA.3534	22	16055206	51186227	11143	0	NEUTRAL	NA	426	Too-Many
TCGA.AA.3543	22	16055206	51186227	11140	-0.0149	NEUTRAL	NA	426	Too-Many
TCGA.AA.3544	22	16055206	51186227	11161	0.034	NEUTRAL	NA	426	Too-Many
TCGA.AA.3555	22	16055206	51186227	11159	-0.0089	NEUTRAL	NA	426	Too-Many
TCGA.AA.3556	22	16055206	51186227	11117	0.015	NEUTRAL	NA	426	Too-Many
TCGA.AA.3660	22	16055206	51186227	11153	-0.0174	NEUTRAL	NA	426	Too-Many
TCGA.AA.3663	22	16055206	51186227	11141	0.0173	NEUTRAL	NA	426	Too-Many
TCGA.AA.3664	22	16055206	51186227	11163	0.0048	NEUTRAL	NA	426	Too-Many
TCGA.AA.3666	22	16055206	51186227	11162	-0.4437	NEUTRAL	NA	426	Too-Many
TCGA.AA.3673	22	16055206	51186227	11165	-0.0972	NEUTRAL	NA	426	Too-Many
TCGA.AA.3675	22	16055206	51186227	11163	0.0084	NEUTRAL	NA	426	Too-Many
TCGA.AA.3680	22	16055206	51186227	11164	0.0233	NEUTRAL	NA	426	Too-Many
TCGA.AA.3681	22	16055206	51186227	11160	0.0268	NEUTRAL	NA	426	Too-Many
TCGA.AA.3685	22	16055206	51186227	11166	-0.2503	NEUTRAL	NA	426	Too-Many
TCGA.AA.3692	22	16055206	51186227	11158	0.0093	NEUTRAL	NA	426	Too-Many
TCGA.AA.3695	22	16055206	51186227	11165	-0.3586	NEUTRAL	NA	426	Too-Many
TCGA.AA.3696	22	16055206	51186227	11165	-0.0135	NEUTRAL	NA	426	Too-Many
TCGA.AA.3697	22	16055206	51186227	11143	-0.1002	NEUTRAL	NA	426	Too-Many
TCGA.AA.3710	22	16055206	51186227	11160	-0.0229	NEUTRAL	NA	426	Too-Many
TCGA.AA.3712	22	16055206	51186227	11155	-0.0622	NEUTRAL	NA	426	Too-Many
TCGA.AA.3713	22	16055206	51186227	11147	-0.0298	NEUTRAL	NA	426	Too-Many
TCGA.AA.3812	22	16055206	51186227	11161	0.0177	NEUTRAL	NA	426	Too-Many
TCGA.AA.3818	22	16055206	51186227	11162	-0.015	NEUTRAL	NA	426	Too-Many
TCGA.AA.3821	22	16055206	51186227	11149	-0.0479	NEUTRAL	NA	426	Too-Many
TCGA.AA.3833	22	16055206	51186227	11164	-0.0477	NEUTRAL	NA	426	Too-Many
TCGA.AA.3837	22	16055206	51186227	11164	-0.2415	NEUTRAL	NA	426	Too-Many
TCGA.AA.3841	22	16055206	51186227	11161	-0.0986	NEUTRAL	NA	426	Too-Many
TCGA.AA.3842	22	16055206	51186227	11160	-0.0677	NEUTRAL	NA	426	Too-Many
TCGA.AA.3845	22	16055206	51186227	11152	0.0753	NEUTRAL	NA	426	Too-Many
TCGA.AA.3846	22	16055206	51186227	11157	0.0177	NEUTRAL	NA	426	Too-Many
TCGA.AA.3852	22	16055206	51186227	11163	-0.0538	NEUTRAL	NA	426	Too-Many
TCGA.AA.3855	22	16055206	51186227	11135	-0.3004	NEUTRAL	NA	426	Too-Many
TCGA.AA.3856	22	16055206	51186227	11165	-0.0432	NEUTRAL	NA	426	Too-Many
TCGA.AA.3866	22	16055206	51186227	11155	-0.0981	NEUTRAL	NA	426	Too-Many
TCGA.AA.3869	22	16055206	51186227	11155	-0.4824	NEUTRAL	NA	426	Too-Many
TCGA.AA.3875	22	16055206	51186227	11164	-0.1617	NEUTRAL	NA	426	Too-Many
TCGA.AA.3947	22	16055206	51186227	11138	0.0252	NEUTRAL	NA	426	Too-Many
TCGA.AA.3950	22	16055206	51186227	11160	0.051	NEUTRAL	NA	426	Too-Many
TCGA.AA.3966	22	16055206	51186227	11149	-0.1766	NEUTRAL	NA	426	Too-Many
TCGA.AA.3968	22	16055206	51186227	11157	-0.4132	NEUTRAL	NA	426	Too-Many
TCGA.AA.3977	22	16055206	51186227	11134	0.1661	NEUTRAL	NA	426	Too-Many
TCGA.AA.3984	22	16055206	51186227	11142	-0.0456	NEUTRAL	NA	426	Too-Many
TCGA.AA.3986	22	16055206	51186227	11153	0.0547	NEUTRAL	NA	426	Too-Many
TCGA.AA.3989	22	16055206	51186227	11156	-0.1719	NEUTRAL	NA	426	Too-Many
TCGA.AA.3994	22	16055206	51186227	11144	-0.0175	NEUTRAL	NA	426	Too-Many
TCGA.AA.A01P	22	16055206	51186227	11135	-0.0138	NEUTRAL	NA	426	Too-Many
TCGA.AA.A01R	22	16055206	51186227	11155	0.001	NEUTRAL	NA	426	Too-Many
TCGA.AA.A01V	22	16055206	51186227	11148	0.0538	NEUTRAL	NA	426	Too-Many
TCGA.AA.A01X	22	16055206	51186227	11149	-0.3287	NEUTRAL	NA	426	Too-Many
TCGA.AA.A022	22	16055206	51186227	11124	-0.0351	NEUTRAL	NA	426	Too-Many
TCGA.AA.A02O	22	16055206	51186227	11152	-0.0128	NEUTRAL	NA	426	Too-Many
TCGA.AA.A02Y	22	16055206	51186227	11144	0.004	NEUTRAL	NA	426	Too-Many
TCGA.AA.A03F	22	16055206	51186227	11151	-0.0068	NEUTRAL	NA	426	Too-Many
TCGA.AD.5900	22	16055206	51186227	11133	-0.0703	NEUTRAL	NA	426	Too-Many
TCGA.AD.6888	22	16055206	51186227	11155	-0.0636	NEUTRAL	NA	426	Too-Many
TCGA.AD.6895	22	16055206	51186227	11150	-0.0915	NEUTRAL	NA	426	Too-Many
TCGA.AD.6899	22	16055206	51186227	11113	-0.2278	NEUTRAL	NA	426	Too-Many
TCGA.AD.6901	22	16055206	51186227	11131	-0.3475	NEUTRAL	NA	426	Too-Many
TCGA.AD.6964	22	16055206	51186227	11152	-0.0853	NEUTRAL	NA	426	Too-Many
TCGA.AD.A5EJ	22	16055206	51186227	11095	-0.0579	NEUTRAL	NA	426	Too-Many
TCGA.AD.A5EK	22	16055206	51186227	11090	-0.0985	NEUTRAL	NA	426	Too-Many
TCGA.AF.2687	22	16055206	51186227	11140	-0.0865	NEUTRAL	NA	426	Too-Many
TCGA.AF.2689	22	16055206	51186227	11148	-0.0216	NEUTRAL	NA	426	Too-Many
TCGA.AF.2690	22	16055206	51186227	11160	0.2282	NEUTRAL	NA	426	Too-Many
TCGA.AF.2691	22	16055206	51186227	11150	0	NEUTRAL	NA	426	Too-Many
TCGA.AF.2692	22	16055206	51186227	11162	-0.4976	NEUTRAL	NA	426	Too-Many
TCGA.AF.3911	22	16055206	51186227	11152	-0.0897	NEUTRAL	NA	426	Too-Many
TCGA.AF.4110	22	16055206	51186227	11152	-0.2774	NEUTRAL	NA	426	Too-Many
TCGA.AF.5654	22	16055206	51186227	11129	0.0149	NEUTRAL	NA	426	Too-Many
TCGA.AF.6136	22	16055206	51186227	11152	-0.4113	NEUTRAL	NA	426	Too-Many
TCGA.AF.6655	22	16055206	51186227	11145	-0.0948	NEUTRAL	NA	426	Too-Many
TCGA.AF.6672	22	16055206	51186227	11152	-0.4263	NEUTRAL	NA	426	Too-Many
TCGA.AF.A56K	22	16055206	51186227	11136	-0.188	NEUTRAL	NA	426	Too-Many
TCGA.AF.A56L	22	16055206	51186227	11127	-0.1672	NEUTRAL	NA	426	Too-Many
TCGA.AF.A56N	22	16055206	51186227	11139	-0.0034	NEUTRAL	NA	426	Too-Many
TCGA.AG.3574	22	16055206	51186227	11150	0.0045	NEUTRAL	NA	426	Too-Many
TCGA.AG.3580	22	16055206	51186227	11159	0.018	NEUTRAL	NA	426	Too-Many
TCGA.AG.3592	22	16055206	51186227	11161	-0.0533	NEUTRAL	NA	426	Too-Many
TCGA.AG.3598	22	16055206	51186227	11119	-0.0366	NEUTRAL	NA	426	Too-Many
TCGA.AG.3599	22	16055206	51186227	11153	0.0053	NEUTRAL	NA	426	Too-Many
TCGA.AG.3727	22	16055206	51186227	11165	0.0235	NEUTRAL	NA	426	Too-Many
TCGA.AG.3728	22	16055206	51186227	11166	-0.2633	NEUTRAL	NA	426	Too-Many
TCGA.AG.3732	22	16055206	51186227	11111	-0.0511	NEUTRAL	NA	426	Too-Many
TCGA.AG.3878	22	16055206	51186227	11162	0.1215	NEUTRAL	NA	426	Too-Many
TCGA.AG.3881	22	16055206	51186227	11157	0.0833	NEUTRAL	NA	426	Too-Many
TCGA.AG.3882	22	16055206	51186227	11164	-0.1457	NEUTRAL	NA	426	Too-Many
TCGA.AG.3883	22	16055206	51186227	11163	-0.2752	NEUTRAL	NA	426	Too-Many
TCGA.AG.3885	22	16055206	51186227	11161	-0.497	NEUTRAL	NA	426	Too-Many
TCGA.AG.3887	22	16055206	51186227	11116	-0.0347	NEUTRAL	NA	426	Too-Many
TCGA.AG.3892	22	16055206	51186227	11125	-0.0127	NEUTRAL	NA	426	Too-Many
TCGA.AG.3894	22	16055206	51186227	11128	-0.0244	NEUTRAL	NA	426	Too-Many
TCGA.AG.3896	22	16055206	51186227	11134	-0.0029	NEUTRAL	NA	426	Too-Many
TCGA.AG.3901	22	16055206	51186227	11130	-0.003	NEUTRAL	NA	426	Too-Many
TCGA.AG.3902	22	16055206	51186227	11132	0.017	NEUTRAL	NA	426	Too-Many
TCGA.AG.4008	22	16055206	51186227	11092	-0.0347	NEUTRAL	NA	426	Too-Many
TCGA.AG.4022	22	16055206	51186227	11158	-0.0953	NEUTRAL	NA	426	Too-Many
TCGA.AG.A01Y	22	16055206	51186227	11122	-0.0918	NEUTRAL	NA	426	Too-Many
TCGA.AG.A02N	22	16055206	51186227	11144	-0.0002	NEUTRAL	NA	426	Too-Many
TCGA.AH.6544	22	16055206	51186227	11151	-0.3253	NEUTRAL	NA	426	Too-Many
TCGA.AH.6547	22	16055206	51186227	11151	-0.0348	NEUTRAL	NA	426	Too-Many
TCGA.AH.6643	22	16055206	51186227	11148	-0.0344	NEUTRAL	NA	426	Too-Many
TCGA.AH.6644	22	16055206	51186227	11135	-0.4481	NEUTRAL	NA	426	Too-Many
TCGA.AH.6903	22	16055206	51186227	11145	-0.0078	NEUTRAL	NA	426	Too-Many
TCGA.AM.5821	22	16055206	51186227	11122	0.0891	NEUTRAL	NA	426	Too-Many
TCGA.AU.3779	22	16055206	51186227	11157	-0.4232	NEUTRAL	NA	426	Too-Many
TCGA.AU.6004	22	16055206	51186227	11116	-0.1157	NEUTRAL	NA	426	Too-Many
TCGA.AY.4070	22	16055206	51186227	11092	-0.1835	NEUTRAL	NA	426	Too-Many
TCGA.AY.6197	22	16055206	51186227	10888	-0.0371	NEUTRAL	NA	426	Too-Many
TCGA.AY.6386	22	16055206	51186227	11151	-0.067	NEUTRAL	NA	426	Too-Many
TCGA.AY.A69D	22	16055206	51186227	11107	-0.3674	NEUTRAL	NA	426	Too-Many
TCGA.AY.A71X	22	16055206	51186227	11146	-0.0936	NEUTRAL	NA	426	Too-Many
TCGA.AY.A8YK	22	16055206	51186227	11134	-0.0695	NEUTRAL	NA	426	Too-Many
TCGA.AZ.4315	22	16055206	51186227	11145	-0.0271	NEUTRAL	NA	426	Too-Many
TCGA.AZ.4323	22	16055206	51186227	11122	-0.0487	NEUTRAL	NA	426	Too-Many
TCGA.AZ.4615	22	16055206	51186227	11148	-0.0037	NEUTRAL	NA	426	Too-Many
TCGA.AZ.4616	22	16055206	51186227	11141	-0.3425	NEUTRAL	NA	426	Too-Many
TCGA.AZ.4681	22	16055206	51186227	11150	0.0068	NEUTRAL	NA	426	Too-Many
TCGA.AZ.4682	22	16055206	51186227	11152	-0.0001	NEUTRAL	NA	426	Too-Many
TCGA.AZ.5403	22	16055206	51186227	11127	-0.0626	NEUTRAL	NA	426	Too-Many
TCGA.AZ.5407	22	16055206	51186227	11158	-0.057	NEUTRAL	NA	426	Too-Many
TCGA.AZ.6598	22	16055206	51186227	11161	-0.0606	NEUTRAL	NA	426	Too-Many
TCGA.AZ.6600	22	16055206	51186227	11143	-0.3129	NEUTRAL	NA	426	Too-Many
TCGA.AZ.6601	22	16055206	51186227	11161	-0.0155	NEUTRAL	NA	426	Too-Many
TCGA.AZ.6606	22	16055206	51186227	11127	0.0091	NEUTRAL	NA	426	Too-Many
TCGA.AZ.6607	22	16055206	51186227	11139	-0.1559	NEUTRAL	NA	426	Too-Many
TCGA.BM.6198	22	16055206	51186227	11156	-0.51275	NEUTRAL	NA	426	Too-Many
TCGA.CA.5255	22	16055206	51186227	11140	-0.1238	NEUTRAL	NA	426	Too-Many
TCGA.CA.6715	22	16055206	51186227	11106	-0.0231	NEUTRAL	NA	426	Too-Many
TCGA.CA.6716	22	16055206	51186227	11146	-0.261	NEUTRAL	NA	426	Too-Many
TCGA.CA.6717	22	16055206	51186227	11130	-0.0463	NEUTRAL	NA	426	Too-Many
TCGA.CA.6718	22	16055206	51186227	11119	-0.0161	NEUTRAL	NA	426	Too-Many
TCGA.CI.6622	22	16055206	51186227	11153	-0.0228	NEUTRAL	NA	426	Too-Many
TCGA.CI.6623	22	16055206	51186227	11154	0	NEUTRAL	NA	426	Too-Many
TCGA.CK.4947	22	16055206	51186227	11146	-0.0829	NEUTRAL	NA	426	Too-Many
TCGA.CK.4950	22	16055206	51186227	11053	-0.0984	NEUTRAL	NA	426	Too-Many
TCGA.CK.4951	22	16055206	51186227	11107	0.0255	NEUTRAL	NA	426	Too-Many
TCGA.CK.5912	22	16055206	51186227	11132	-0.3412	NEUTRAL	NA	426	Too-Many
TCGA.CK.5915	22	16055206	51186227	11135	-0.2841	NEUTRAL	NA	426	Too-Many
TCGA.CK.5916	22	16055206	51186227	11120	-0.0511	NEUTRAL	NA	426	Too-Many
TCGA.CK.6746	22	16055206	51186227	11136	-0.0072	NEUTRAL	NA	426	Too-Many
TCGA.CK.6747	22	16055206	51186227	11118	-0.0551	NEUTRAL	NA	426	Too-Many
TCGA.CK.6748	22	16055206	51186227	11149	-0.4921	NEUTRAL	NA	426	Too-Many
TCGA.CK.6751	22	16055206	51186227	11115	-0.0074	NEUTRAL	NA	426	Too-Many
TCGA.CL.5917	22	16055206	51186227	11136	-0.0133	NEUTRAL	NA	426	Too-Many
TCGA.CL.5918	22	16055206	51186227	11135	-0.0397	NEUTRAL	NA	426	Too-Many
TCGA.CM.4743	22	16055206	51186227	11150	-0.061	NEUTRAL	NA	426	Too-Many
TCGA.CM.4746	22	16055206	51186227	11147	-0.0137	NEUTRAL	NA	426	Too-Many
TCGA.CM.4747	22	16055206	51186227	11146	-0.4639	NEUTRAL	NA	426	Too-Many
TCGA.CM.4748	22	16055206	51186227	11151	-0.0023	NEUTRAL	NA	426	Too-Many
TCGA.CM.4752	22	16055206	51186227	11142	-0.0587	NEUTRAL	NA	426	Too-Many
TCGA.CM.5341	22	16055206	51186227	11152	-0.2145	NEUTRAL	NA	426	Too-Many
TCGA.CM.5344	22	16055206	51186227	11153	0	NEUTRAL	NA	426	Too-Many
TCGA.CM.5348	22	16055206	51186227	11155	-0.0906	NEUTRAL	NA	426	Too-Many
TCGA.CM.5860	22	16055206	51186227	11134	-0.0838	NEUTRAL	NA	426	Too-Many
TCGA.CM.5861	22	16055206	51186227	11141	-0.0226	NEUTRAL	NA	426	Too-Many
TCGA.CM.5862	22	16055206	51186227	11134	-0.2102	NEUTRAL	NA	426	Too-Many
TCGA.CM.5863	22	16055206	51186227	11149	-0.006	NEUTRAL	NA	426	Too-Many
TCGA.CM.5864	22	16055206	51186227	11128	-0.0277	NEUTRAL	NA	426	Too-Many
TCGA.CM.5868	22	16055206	51186227	11133	0.0461	NEUTRAL	NA	426	Too-Many
TCGA.CM.6161	22	16055206	51186227	11127	-0.195	NEUTRAL	NA	426	Too-Many
TCGA.CM.6162	22	16055206	51186227	11134	-0.0945	NEUTRAL	NA	426	Too-Many
TCGA.CM.6164	22	16055206	51186227	11145	-0.1648	NEUTRAL	NA	426	Too-Many
TCGA.CM.6166	22	16055206	51186227	11159	-0.0762	NEUTRAL	NA	426	Too-Many
TCGA.CM.6167	22	16055206	51186227	11153	0.0068	NEUTRAL	NA	426	Too-Many
TCGA.CM.6168	22	16055206	51186227	11151	-0.0366	NEUTRAL	NA	426	Too-Many
TCGA.CM.6169	22	16055206	51186227	11107	0	NEUTRAL	NA	426	Too-Many
TCGA.CM.6171	22	16055206	51186227	11159	-0.0768	NEUTRAL	NA	426	Too-Many
TCGA.CM.6172	22	16055206	51186227	11160	-0.0722	NEUTRAL	NA	426	Too-Many
TCGA.CM.6674	22	16055206	51186227	11145	-0.0395	NEUTRAL	NA	426	Too-Many
TCGA.CM.6675	22	16055206	51186227	11141	0.0169	NEUTRAL	NA	426	Too-Many
TCGA.CM.6676	22	16055206	51186227	11128	0.1349	NEUTRAL	NA	426	Too-Many
TCGA.CM.6678	22	16055206	51186227	11145	-0.2092	NEUTRAL	NA	426	Too-Many
TCGA.CM.6680	22	16055206	51186227	11149	-0.038	NEUTRAL	NA	426	Too-Many
TCGA.D5.5537	22	16055206	51186227	11143	-0.4165	NEUTRAL	NA	426	Too-Many
TCGA.D5.5538	22	16055206	51186227	11136	-0.0761	NEUTRAL	NA	426	Too-Many
TCGA.D5.5541	22	16055206	51186227	11156	-0.1156	NEUTRAL	NA	426	Too-Many
TCGA.D5.6529	22	16055206	51186227	11162	-0.2602	NEUTRAL	NA	426	Too-Many
TCGA.D5.6530	22	16055206	51186227	11159	-0.0813	NEUTRAL	NA	426	Too-Many
TCGA.D5.6531	22	16055206	51186227	11153	-0.0946	NEUTRAL	NA	426	Too-Many
TCGA.D5.6532	22	16055206	51186227	11152	-0.0287	NEUTRAL	NA	426	Too-Many
TCGA.D5.6535	22	16055206	51186227	11154	-0.3977	NEUTRAL	NA	426	Too-Many
TCGA.D5.6537	22	16055206	51186227	11114	-0.076	NEUTRAL	NA	426	Too-Many
TCGA.D5.6538	22	16055206	51186227	11151	-0.1111	NEUTRAL	NA	426	Too-Many
TCGA.D5.6539	22	16055206	51186227	11137	-0.2421	NEUTRAL	NA	426	Too-Many
TCGA.D5.6540	22	16055206	51186227	11136	0.0074	NEUTRAL	NA	426	Too-Many
TCGA.D5.6541	22	16055206	51186227	11160	-0.0538	NEUTRAL	NA	426	Too-Many
TCGA.D5.6898	22	16055206	51186227	11150	-0.1559	NEUTRAL	NA	426	Too-Many
TCGA.D5.6922	22	16055206	51186227	11151	-0.0756	NEUTRAL	NA	426	Too-Many
TCGA.D5.6924	22	16055206	51186227	11150	-0.0241	NEUTRAL	NA	426	Too-Many
TCGA.D5.6928	22	16055206	51186227	11150	-0.0502	NEUTRAL	NA	426	Too-Many
TCGA.D5.6929	22	16055206	51186227	11152	-0.0612	NEUTRAL	NA	426	Too-Many
TCGA.D5.6930	22	16055206	51186227	11146	-0.021	NEUTRAL	NA	426	Too-Many
TCGA.D5.6931	22	16055206	51186227	11144	-0.0529	NEUTRAL	NA	426	Too-Many
TCGA.D5.7000	22	16055206	51186227	11114	-0.0243	NEUTRAL	NA	426	Too-Many
TCGA.DC.4745	22	16055206	51186227	11156	-0.2484	NEUTRAL	NA	426	Too-Many
TCGA.DC.4749	22	16055206	51186227	11160	-0.0833	NEUTRAL	NA	426	Too-Many
TCGA.DC.5337	22	16055206	51186227	11092	-0.0316	NEUTRAL	NA	426	Too-Many
TCGA.DC.6154	22	16055206	51186227	11150	-0.0301	NEUTRAL	NA	426	Too-Many
TCGA.DC.6155	22	16055206	51186227	11107	-0.5003	NEUTRAL	NA	426	Too-Many
TCGA.DC.6157	22	16055206	51186227	11038	-0.127	NEUTRAL	NA	426	Too-Many
TCGA.DC.6158	22	16055206	51186227	11119	-0.3382	NEUTRAL	NA	426	Too-Many
TCGA.DC.6681	22	16055206	51186227	11149	-0.0729	NEUTRAL	NA	426	Too-Many
TCGA.DC.6682	22	16055206	51186227	11155	-0.4082	NEUTRAL	NA	426	Too-Many
TCGA.DC.6683	22	16055206	51186227	11144	-0.3919	NEUTRAL	NA	426	Too-Many
TCGA.DM.A0X9	22	16055206	51186227	11151	-0.0395	NEUTRAL	NA	426	Too-Many
TCGA.DM.A0XD	22	16055206	51186227	11112	-0.0245	NEUTRAL	NA	426	Too-Many
TCGA.DM.A0XF	22	16055206	51186227	11156	-0.0548	NEUTRAL	NA	426	Too-Many
TCGA.DM.A1D4	22	16055206	51186227	11156	-0.0129	NEUTRAL	NA	426	Too-Many
TCGA.DM.A1D6	22	16055206	51186227	11156	-0.0171	NEUTRAL	NA	426	Too-Many
TCGA.DM.A1DA	22	16055206	51186227	11151	-0.1533	NEUTRAL	NA	426	Too-Many
TCGA.DM.A1HB	22	16055206	51186227	10833	0.0397	NEUTRAL	NA	426	Too-Many
TCGA.DM.A280	22	16055206	51186227	11144	0.0417	NEUTRAL	NA	426	Too-Many
TCGA.DM.A288	22	16055206	51186227	11129	0	NEUTRAL	NA	426	Too-Many
TCGA.DM.A28C	22	16055206	51186227	11153	-0.0621	NEUTRAL	NA	426	Too-Many
TCGA.DM.A28E	22	16055206	51186227	11136	-0.0435	NEUTRAL	NA	426	Too-Many
TCGA.DM.A28G	22	16055206	51186227	11154	0.0706	NEUTRAL	NA	426	Too-Many
TCGA.DM.A28H	22	16055206	51186227	11147	0	NEUTRAL	NA	426	Too-Many
TCGA.DY.A0XA	22	16055206	51186227	11143	-0.0527	NEUTRAL	NA	426	Too-Many
TCGA.DY.A1DC	22	16055206	51186227	11146	-0.4819	NEUTRAL	NA	426	Too-Many
TCGA.DY.A1DD	22	16055206	51186227	11156	-0.0368	NEUTRAL	NA	426	Too-Many
TCGA.EF.5830	22	16055206	51186227	11136	-0.0453	NEUTRAL	NA	426	Too-Many
TCGA.EI.6506	22	16055206	51186227	11138	-0.2256	NEUTRAL	NA	426	Too-Many
TCGA.EI.6507	22	16055206	51186227	11158	-0.0294	NEUTRAL	NA	426	Too-Many
TCGA.EI.6509	22	16055206	51186227	11159	-0.0499	NEUTRAL	NA	426	Too-Many
TCGA.EI.6510	22	16055206	51186227	11140	-0.0671	NEUTRAL	NA	426	Too-Many
TCGA.EI.6511	22	16055206	51186227	11151	-0.0343	NEUTRAL	NA	426	Too-Many
TCGA.EI.6512	22	16055206	51186227	11156	-0.0962	NEUTRAL	NA	426	Too-Many
TCGA.EI.6514	22	16055206	51186227	11145	-0.1435	NEUTRAL	NA	426	Too-Many
TCGA.EI.6882	22	16055206	51186227	11149	-0.0114	NEUTRAL	NA	426	Too-Many
TCGA.EI.6883	22	16055206	51186227	11143	-0.0077	NEUTRAL	NA	426	Too-Many
TCGA.EI.6884	22	16055206	51186227	11135	-0.0121	NEUTRAL	NA	426	Too-Many
TCGA.EI.6885	22	16055206	51186227	11145	0.0309	NEUTRAL	NA	426	Too-Many
TCGA.EI.6917	22	16055206	51186227	11138	-0.1063	NEUTRAL	NA	426	Too-Many
TCGA.F4.6461	22	16055206	51186227	11108	-0.0585	NEUTRAL	NA	426	Too-Many
TCGA.F4.6463	22	16055206	51186227	11151	-0.0772	NEUTRAL	NA	426	Too-Many
TCGA.F4.6570	22	16055206	51186227	11160	-0.0619	NEUTRAL	NA	426	Too-Many
TCGA.F4.6703	22	16055206	51186227	11148	0.036	NEUTRAL	NA	426	Too-Many
TCGA.F4.6704	22	16055206	51186227	11150	-0.2045	NEUTRAL	NA	426	Too-Many
TCGA.F4.6805	22	16055206	51186227	11147	-0.0159	NEUTRAL	NA	426	Too-Many
TCGA.F4.6806	22	16055206	51186227	11121	-0.0344	NEUTRAL	NA	426	Too-Many
TCGA.F4.6809	22	16055206	51186227	11138	-0.1728	NEUTRAL	NA	426	Too-Many
TCGA.F4.6855	22	16055206	51186227	11131	-0.001	NEUTRAL	NA	426	Too-Many
TCGA.F4.6856	22	16055206	51186227	11150	0.0104	NEUTRAL	NA	426	Too-Many
TCGA.F5.6464	22	16055206	51186227	11158	-0.0657	NEUTRAL	NA	426	Too-Many
TCGA.F5.6465	22	16055206	51186227	11160	-0.0714	NEUTRAL	NA	426	Too-Many
TCGA.F5.6702	22	16055206	51186227	11119	-0.1749	NEUTRAL	NA	426	Too-Many
TCGA.F5.6810	22	16055206	51186227	11151	-0.5122	NEUTRAL	NA	426	Too-Many
TCGA.F5.6813	22	16055206	51186227	11156	-0.0231	NEUTRAL	NA	426	Too-Many
TCGA.F5.6814	22	16055206	51186227	11151	-0.0522	NEUTRAL	NA	426	Too-Many
TCGA.F5.6861	22	16055206	51186227	11132	0.003	NEUTRAL	NA	426	Too-Many
TCGA.F5.6864	22	16055206	51186227	11151	-0.0498	NEUTRAL	NA	426	Too-Many
TCGA.G4.6293	22	16055206	51186227	11151	-0.093	NEUTRAL	NA	426	Too-Many
TCGA.G4.6295	22	16055206	51186227	11157	-0.4183	NEUTRAL	NA	426	Too-Many
TCGA.G4.6297	22	16055206	51186227	11156	-0.1797	NEUTRAL	NA	426	Too-Many
TCGA.G4.6299	22	16055206	51186227	11162	-0.1283	NEUTRAL	NA	426	Too-Many
TCGA.G4.6302	22	16055206	51186227	11155	-0.0301	NEUTRAL	NA	426	Too-Many
TCGA.G4.6304	22	16055206	51186227	11149	-0.0581	NEUTRAL	NA	426	Too-Many
TCGA.G4.6306	22	16055206	51186227	11154	-0.0943	NEUTRAL	NA	426	Too-Many
TCGA.G4.6307	22	16055206	51186227	11155	-0.0524	NEUTRAL	NA	426	Too-Many
TCGA.G4.6309	22	16055206	51186227	11143	-0.0074	NEUTRAL	NA	426	Too-Many
TCGA.G4.6310	22	16055206	51186227	11148	-0.2729	NEUTRAL	NA	426	Too-Many
TCGA.G4.6311	22	16055206	51186227	11153	-0.0393	NEUTRAL	NA	426	Too-Many
TCGA.G4.6314	22	16055206	51186227	11154	0.2364	NEUTRAL	NA	426	Too-Many
TCGA.G4.6315	22	16055206	51186227	11158	-0.2015	NEUTRAL	NA	426	Too-Many
TCGA.G4.6317	22	16055206	51186227	11159	-0.1934	NEUTRAL	NA	426	Too-Many
TCGA.G4.6320	22	16055206	51186227	11158	-0.0186	NEUTRAL	NA	426	Too-Many
TCGA.G4.6321	22	16055206	51186227	11153	-0.0037	NEUTRAL	NA	426	Too-Many
TCGA.G4.6322	22	16055206	51186227	11151	-0.0472	NEUTRAL	NA	426	Too-Many
TCGA.G4.6323	22	16055206	51186227	11156	-0.0288	NEUTRAL	NA	426	Too-Many
TCGA.G4.6586	22	16055206	51186227	11158	-0.0741	NEUTRAL	NA	426	Too-Many
TCGA.G4.6588	22	16055206	51186227	11156	-0.0748	NEUTRAL	NA	426	Too-Many
TCGA.G4.6625	22	16055206	51186227	11148	-0.2095	NEUTRAL	NA	426	Too-Many
TCGA.G4.6626	22	16055206	51186227	11162	-0.4413	NEUTRAL	NA	426	Too-Many
TCGA.G4.6628	22	16055206	51186227	11143	-0.0079	NEUTRAL	NA	426	Too-Many
TCGA.G5.6233	22	16055206	51186227	11157	-0.1865	NEUTRAL	NA	426	Too-Many
TCGA.G5.6235	22	16055206	51186227	11160	-0.091	NEUTRAL	NA	426	Too-Many
TCGA.G5.6572	22	16055206	51186227	11144	-0.0405	NEUTRAL	NA	426	Too-Many
TCGA.G5.6641	22	16055206	51186227	11143	-0.4601	NEUTRAL	NA	426	Too-Many
TCGA.NH.A50T	22	16055206	51186227	11080	-0.4588	NEUTRAL	NA	426	Too-Many
TCGA.NH.A50U	22	16055206	51186227	11153	-0.4486	NEUTRAL	NA	426	Too-Many
TCGA.NH.A5IV	22	16055206	51186227	11146	0.0489	NEUTRAL	NA	426	Too-Many
TCGA.NH.A6GC	22	16055206	51186227	11128	-0.0782	NEUTRAL	NA	426	Too-Many
TCGA.NH.A8F8	22	16055206	51186227	11147	-0.0824	NEUTRAL	NA	426	Too-Many
TCGA.QG.A5YX	22	16055206	51186227	11065	-0.1715	NEUTRAL	NA	426	Too-Many
TCGA.QG.A5Z2	22	16055206	51186227	11067	-0.1037	NEUTRAL	NA	426	Too-Many
TCGA.T9.A92H	22	16055206	51186227	11157	-0.0386	NEUTRAL	NA	426	Too-Many
TCGA.WS.AB45	22	16055206	51186227	11146	-0.0424	NEUTRAL	NA	426	Too-Many
TCGA.AA.3941	22	16061341	34353432	5519	0.375	NEUTRAL	NA	206	Too-Many
TCGA.A6.2672	22	16061341	51186227	11118	-0.4467	NEUTRAL	NA	426	Too-Many
TCGA.A6.2685	22	16061341	51186227	11126	0.018	NEUTRAL	NA	426	Too-Many
TCGA.AA.3489	22	16061341	51186227	11122	0.0201	NEUTRAL	NA	426	Too-Many
TCGA.AZ.6603	22	16061341	51186227	11146	-0.2532	NEUTRAL	NA	426	Too-Many
TCGA.CM.6677	22	16061341	51186227	11117	-0.2914	NEUTRAL	NA	426	Too-Many
TCGA.F4.6854	22	16061341	51186227	11143	-0.0248	NEUTRAL	NA	426	Too-Many
TCGA.CK.5914.01A	22	16258257	18363923	118	-0.2365	NEUTRAL	NA	16	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,OR11H1,POTEH,SLC25A18,XKR3"
TCGA.A6.3810.01A	22	16258257	19511671	291	-0.3679	NEUTRAL	NA	33	"ATP6V1E1,BCL2L13,BID,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,DGCR14,DGCR2,DGCR6,GAB4,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,SLC25A1,SLC25A18,TSSK2,TUBA8,UFD1L,USP18,XKR3"
TCGA.AH.6549.01A	22	16258257	21414613	577	-0.3758	NEUTRAL	NA	65	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8,ZNF74"
TCGA.CM.6165.01A	22	16258257	22055376	642	-0.1361	NEUTRAL	NA	75	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,XKR3,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.AA.3509.01A	22	16258257	24324777	879	-0.1315	NEUTRAL	NA	104	Too-Many
TCGA.AA.A024.01A	22	16258257	50961998	3143	0.067	NEUTRAL	NA	416	Too-Many
TCGA.AA.3980.01A	22	16258257	51223594	3866	-0.1247	NEUTRAL	NA	427	Too-Many
TCGA.AY.A54L.01A	22	16258257	51223594	3969	-0.0921	NEUTRAL	NA	427	Too-Many
TCGA.AZ.4684.01A	22	16258257	51223594	3969	-0.0082	NEUTRAL	NA	427	Too-Many
TCGA.CK.4948.01B	22	16258257	51223594	3971	0.0392	NEUTRAL	NA	427	Too-Many
TCGA.CM.4744.01A	22	16258257	51223594	3967	-0.0739	NEUTRAL	NA	427	Too-Many
TCGA.CM.4750.01A	22	16258257	51223594	3962	-0.1288	NEUTRAL	NA	427	Too-Many
TCGA.DM.A282.01A	22	16258257	51223594	3953	-5.00E-04	NEUTRAL	NA	427	Too-Many
TCGA.DM.A28M.01A	22	16258257	51223594	3974	-0.1589	NEUTRAL	NA	427	Too-Many
TCGA.AG.3909.01A	22	16266947	17472716	19	0.0301	NEUTRAL	NA	5	"CCT8L2,GAB4,OR11H1,POTEH,XKR3"
TCGA.AF.3914.01A	22	16266947	17585557	27	-0.1371	NEUTRAL	NA	6	"CCT8L2,GAB4,IL17RA,OR11H1,POTEH,XKR3"
TCGA.AG.3891.01A	22	16266947	17629287	38	-0.0845	NEUTRAL	NA	8	"CCT8L2,CECR5,CECR6,GAB4,IL17RA,OR11H1,POTEH,XKR3"
TCGA.AA.A00L.01A	22	16266947	18070653	53	0.2954	NEUTRAL	NA	12	"CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,OR11H1,POTEH,SLC25A18,XKR3"
TCGA.AG.A032.01A	22	16266947	18347501	95	0.02	NEUTRAL	NA	16	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,OR11H1,POTEH,SLC25A18,XKR3"
TCGA.AG.A016.01A	22	16266947	19178768	162	-0.017	NEUTRAL	NA	27	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,CLTCL1,DGCR14,DGCR2,DGCR6,GAB4,GSC2,IL17RA,LOC101929372,MICAL3,OR11H1,PEX26,POTEH,PRODH,SLC25A1,SLC25A18,TSSK2,TUBA8,USP18,XKR3"
TCGA.AA.3930.01A	22	16266947	20097492	358	-0.4298	NEUTRAL	NA	43	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3"
TCGA.AA.3815.01A	22	16266947	20100927	353	0.0077	NEUTRAL	NA	44	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3"
TCGA.AG.A00H.01A	22	16266947	20456330	295	-0.1589	NEUTRAL	NA	51	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,LOC388849,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8"
TCGA.AG.A00Y.01A	22	16266947	20456330	317	-0.1059	NEUTRAL	NA	51	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,LOC388849,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8"
TCGA.AG.A015.01A	22	16266947	21341736	394	-0.0859	NEUTRAL	NA	61	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LZTR1,MED15,MICAL3,MRPL40,OR11H1,PEX26,PI4KA,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC25A18,SNAP29,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8,ZNF74"
TCGA.AA.3861.01A	22	16266947	21411342	528	-0.2032	NEUTRAL	NA	65	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8,ZNF74"
TCGA.AG.A01L.01A	22	16266947	24204254	638	-0.3797	NEUTRAL	NA	99	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BCR,BID,C22orf15,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CHCHD10,CLDN5,CLTCL1,COMT,CRKL,DERL3,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,DRICH1,GAB4,GGTLC2,GNAZ,GNB1L,GP1BB,GSC2,HIC2,HIRA,IGLL1,IGLL5,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MMP11,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PPM1F,PRAME,PRODH,RAB36,RANBP1,RGL4,RIMBP3,RIMBP3B,RIMBP3C,RSPH14,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC2A11,SLC7A4,SMARCB1,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,VPREB3,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF70,ZNF74"
TCGA.AG.A00C.01A	22	16266947	26866656	930	-0.0105	NEUTRAL	NA	128	Too-Many
TCGA.AG.A025.01A	22	16266947	29954810	1079	-0.1595	NEUTRAL	NA	153	Too-Many
TCGA.AA.A01I.01A	22	16266947	30887513	1147	-0.1923	NEUTRAL	NA	171	Too-Many
TCGA.AA.A02J.01A	22	16266947	30953212	1014	-0.0967	NEUTRAL	NA	173	Too-Many
TCGA.AA.A02E.01A	22	16266947	31985391	1249	-0.0177	NEUTRAL	NA	190	Too-Many
TCGA.AG.A01J.01A	22	16266947	36886016	1554	-0.1265	NEUTRAL	NA	223	Too-Many
TCGA.AG.A008.01A	22	16266947	42084701	2454	0.1309	NEUTRAL	NA	326	Too-Many
TCGA.AG.A02X.01A	22	16266947	45258184	2648	0.058	NEUTRAL	NA	369	Too-Many
TCGA.AA.3967.01A	22	16266947	51220568	3447	0.1424	NEUTRAL	NA	427	Too-Many
TCGA.AA.A004.01A	22	16266947	51220568	2588	-0.2082	NEUTRAL	NA	427	Too-Many
TCGA.AA.A00K.01A	22	16266947	51220568	2726	0.3024	NEUTRAL	NA	427	Too-Many
TCGA.AA.A00O.01A	22	16266947	51220568	2731	-0.2017	NEUTRAL	NA	427	Too-Many
TCGA.AA.A017.01A	22	16266947	51220568	2709	-0.1003	NEUTRAL	NA	427	Too-Many
TCGA.AA.A01C.01A	22	16266947	51220568	3058	-0.4206	NEUTRAL	NA	427	Too-Many
TCGA.AA.A01D.01A	22	16266947	51220568	2562	-0.1848	NEUTRAL	NA	427	Too-Many
TCGA.AA.A01K.01A	22	16266947	51220568	2696	-0.1532	NEUTRAL	NA	427	Too-Many
TCGA.AA.A029.01A	22	16266947	51220568	2696	-0.4083	NEUTRAL	NA	427	Too-Many
TCGA.AA.A02H.01A	22	16266947	51220568	2733	-0.1644	NEUTRAL	NA	427	Too-Many
TCGA.AA.A02R.01A	22	16266947	51220568	2591	-0.0936	NEUTRAL	NA	427	Too-Many
TCGA.AA.A02W.01A	22	16266947	51220568	2847	-0.2661	NEUTRAL	NA	427	Too-Many
TCGA.AG.A011.01A	22	16266947	51220568	2950	0.085	NEUTRAL	NA	427	Too-Many
TCGA.AG.A014.01A	22	16266947	51220568	2983	0.0108	NEUTRAL	NA	427	Too-Many
TCGA.AG.A01N.01A	22	16266947	51220568	2998	-0.2717	NEUTRAL	NA	427	Too-Many
TCGA.AG.A023.01A	22	16266947	51220568	2829	-0.2243	NEUTRAL	NA	427	Too-Many
TCGA.AA.A02K.01A	22	16266948	21345931	505	-0.3421	NEUTRAL	NA	61	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LZTR1,MED15,MICAL3,MRPL40,OR11H1,PEX26,PI4KA,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC25A18,SNAP29,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8,ZNF74"
TCGA.AA.A00Z.01A	22	16277715	49246568	89	0.2793	NEUTRAL	NA	391	Too-Many
TCGA.AG.3605.01A	22	16277715	49246568	82	0.2849	NEUTRAL	NA	391	Too-Many
TCGA.AG.3731	22	16365494	30343185	4129	-0.1669	NEUTRAL	NA	158	Too-Many
TCGA.AA.3870	22	16365494	37365273	6705	0.0952	NEUTRAL	NA	228	Too-Many
TCGA.A6.5656	22	16365494	51186227	11097	-0.0223	NEUTRAL	NA	425	Too-Many
TCGA.AG.3893	22	16365494	51186227	11045	0.0261	NEUTRAL	NA	425	Too-Many
TCGA.AG.A01W.01A	22	16589405	16743924	25	0.1852	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	22	16748593	17277634	34	-0.2536	NEUTRAL	NA	2	"CCT8L2,XKR3"
TCGA.DM.A28K	22	16877134	18617514	559	-0.0115	NEUTRAL	NA	16	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,PEX26,SLC25A18,TUBA8,XKR3"
TCGA.AA.3495	22	16877134	18626233	561	0.3071	NEUTRAL	NA	16	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,PEX26,SLC25A18,TUBA8,XKR3"
TCGA.DM.A1D7	22	16877134	23112534	1530	0.2046	NEUTRAL	NA	81	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GGTLC2,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,P2RX6,PEX26,PI4KA,PPIL2,PPM1F,PRAME,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF74"
TCGA.AG.3890	22	16877134	24014228	1782	-0.0297	NEUTRAL	NA	88	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BCR,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,DRICH1,GAB4,GGTLC2,GNAZ,GNB1L,GP1BB,GSC2,HIC2,HIRA,IGLL1,IGLL5,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,P2RX6,PEX26,PI4KA,PPIL2,PPM1F,PRAME,PRODH,RAB36,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RSPH14,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF74"
TCGA.AH.6897	22	16877134	47797441	9679	0.3181	NEUTRAL	NA	388	Too-Many
TCGA.AA.3667	22	16877134	48831981	10272	0.0322	NEUTRAL	NA	388	Too-Many
TCGA.AA.3693	22	16877134	49851211	10862	0.0276	NEUTRAL	NA	389	Too-Many
TCGA.AF.3913	22	16877134	50534951	11007	5.00E-04	NEUTRAL	NA	398	Too-Many
TCGA.A6.6142	22	16877134	51186227	11159	0.0071	NEUTRAL	NA	424	Too-Many
TCGA.AA.3854	22	16877134	51186227	11162	0.0316	NEUTRAL	NA	424	Too-Many
TCGA.AA.3867	22	16877134	51186227	11149	0.018	NEUTRAL	NA	424	Too-Many
TCGA.AA.3949	22	16877134	51186227	11155	0.0913	NEUTRAL	NA	424	Too-Many
TCGA.AA.3956	22	16877134	51186227	11149	0.1341	NEUTRAL	NA	424	Too-Many
TCGA.AA.3976	22	16877134	51186227	11147	-0.4862	NEUTRAL	NA	424	Too-Many
TCGA.AA.A01S	22	16877134	51186227	11145	-0.00745	NEUTRAL	NA	424	Too-Many
TCGA.AG.3591	22	16877134	51186227	11158	-0.3474	NEUTRAL	NA	424	Too-Many
TCGA.AG.3726	22	16877134	51186227	11153	0.0256	NEUTRAL	NA	424	Too-Many
TCGA.AG.3742	22	16877134	51186227	11059	-0.0267	NEUTRAL	NA	424	Too-Many
TCGA.AG.3898	22	16877134	51186227	11105	0.0466	NEUTRAL	NA	424	Too-Many
TCGA.CI.6620	22	16877134	51186227	11140	0.0048	NEUTRAL	NA	424	Too-Many
TCGA.CK.5913	22	16877134	51186227	11142	-0.0132	NEUTRAL	NA	424	Too-Many
TCGA.DM.A1D8	22	16877134	51186227	11134	-0.5052	NEUTRAL	NA	424	Too-Many
TCGA.DY.A1DF	22	16877134	51186227	11156	0.2951	NEUTRAL	NA	424	Too-Many
TCGA.EI.6513	22	16877134	51186227	11158	-0.0397	NEUTRAL	NA	424	Too-Many
TCGA.F4.6808	22	16877134	51186227	11144	-0.0738	NEUTRAL	NA	424	Too-Many
TCGA.F5.6571	22	16877134	51186227	11151	-0.0702	NEUTRAL	NA	424	Too-Many
TCGA.NH.A6GB	22	16877134	51186227	11153	-0.0589	NEUTRAL	NA	424	Too-Many
TCGA.SS.A7HO	22	16877134	51186227	11157	-0.0224	NEUTRAL	NA	424	Too-Many
TCGA.AY.6196	22	16877229	43598380	7917	-0.0562	NEUTRAL	NA	353	Too-Many
TCGA.DC.5869	22	16877229	51186227	11124	-0.0822	NEUTRAL	NA	424	Too-Many
TCGA.CL.4957	22	16888899	18877786	569	-0.415	NEUTRAL	NA	17	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,PEX26,SLC25A18,TUBA8,USP18,XKR3"
TCGA.AG.4015	22	16888899	23869390	1746	0.0639	NEUTRAL	NA	86	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BCR,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GGTLC2,GNAZ,GNB1L,GP1BB,GSC2,HIC2,HIRA,IGLL5,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,P2RX6,PEX26,PI4KA,PPIL2,PPM1F,PRAME,PRODH,RAB36,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RSPH14,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF74"
TCGA.CM.6163	22	17030791	20065369	903	-0.0176	NEUTRAL	NA	40	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,MRPL40,PEX26,PRODH,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3"
TCGA.AA.3678	22	17030791	22254999	1261	0.0568	NEUTRAL	NA	74	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,P2RX6,PEX26,PI4KA,PPIL2,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,XKR3,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.F5.6812	22	17030791	22726967	1465	-0.1391	NEUTRAL	NA	77	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,P2RX6,PEX26,PI4KA,PPIL2,PPM1F,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,XKR3,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.CM.6679	22	17030791	30280161	4097	0.12155	NEUTRAL	NA	157	Too-Many
TCGA.AA.3684	22	17030791	48832792	10262	0.0287	NEUTRAL	NA	388	Too-Many
TCGA.D5.6927	22	17030791	51186227	11137	0.0052	NEUTRAL	NA	424	Too-Many
TCGA.CA.6719	22	17056414	25225878	2027	-0.1235	NEUTRAL	NA	116	Too-Many
TCGA.AG.3611.01A	22	17071738	17670779	33	-0.1107	NEUTRAL	NA	7	"CCT8L2,CECR1,CECR5,CECR6,GAB4,IL17RA,XKR3"
TCGA.AA.3862.01A	22	17071738	21411342	536	-0.2643	NEUTRAL	NA	63	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MED15,MICAL3,MRPL40,P2RX6,PEX26,PI4KA,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8,ZNF74"
TCGA.AA.A00Q.01A	22	17071738	24180484	540	0.1778	NEUTRAL	NA	96	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BCR,BID,C22orf15,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CHCHD10,CLDN5,CLTCL1,COMT,CRKL,DERL3,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,DRICH1,GAB4,GGTLC2,GNAZ,GNB1L,GP1BB,GSC2,HIC2,HIRA,IGLL1,IGLL5,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MMP11,MRPL40,P2RX6,PEX26,PI4KA,PPIL2,PPM1F,PRAME,PRODH,RAB36,RANBP1,RGL4,RIMBP3,RIMBP3B,RIMBP3C,RSPH14,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SMARCB1,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,VPREB3,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF70,ZNF74"
TCGA.AA.A01F.01A	22	17071738	51216317	2683	0.1561	NEUTRAL	NA	425	Too-Many
TCGA.AA.A00J.01A	22	17071738	51220568	2779	0.0273	NEUTRAL	NA	425	Too-Many
TCGA.AG.3906.01A	22	17264457	17472716	12	-0.4291	NEUTRAL	NA	2	"GAB4,XKR3"
TCGA.AG.4009.01A	22	17264457	17488782	13	0.0483	NEUTRAL	NA	2	"GAB4,XKR3"
TCGA.A6.3808.01A	22	17264457	18609073	137	0.1256	NEUTRAL	NA	15	"ATP6V1E1,BCL2L13,BID,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,PEX26,SLC25A18,TUBA8,XKR3"
TCGA.AG.A01W.01A	22	17278352	17498887	23	0.2829	NEUTRAL	NA	2	"GAB4,XKR3"
TCGA.AA.A010.01A	22	17280639	17565953	13	0.2774	NEUTRAL	NA	3	"GAB4,IL17RA,XKR3"
TCGA.AA.3530	22	17305776	17310487	9	0.2829	NEUTRAL	NA	0	None
TCGA.AA.3864	22	17305776	51186227	11092	0.1824	NEUTRAL	NA	422	Too-Many
TCGA.AA.3982	22	17318681	22487416	1317	0.3476	NEUTRAL	NA	74	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,P2RX6,PEX26,PI4KA,PPIL2,PPM1F,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.AA.3530	22	17319155	34328450	5437	0.2305	NEUTRAL	NA	202	Too-Many
TCGA.AA.3939.01A	22	17446948	51223594	3829	-0.1831	NEUTRAL	NA	423	Too-Many
TCGA.AG.3906.01A	22	17488782	17586696	10	0.1512	NEUTRAL	NA	2	"GAB4,IL17RA"
TCGA.AG.A01W.01A	22	17501668	17516478	8	-0.3413	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	22	17555021	19130681	206	0.149	NEUTRAL	NA	19	"ATP6V1E1,BCL2L13,BID,CECR1,CECR2,CECR5,CECR6,DGCR14,DGCR2,DGCR6,IL17RA,LOC101929372,MICAL3,PEX26,PRODH,SLC25A18,TSSK2,TUBA8,USP18"
TCGA.AA.A01Q.01A	22	17577875	17684413	28	-0.5098	NEUTRAL	NA	4	"CECR1,CECR5,CECR6,IL17RA"
TCGA.AF.3914.01A	22	17618862	19076833	133	-0.1076	NEUTRAL	NA	15	"ATP6V1E1,BCL2L13,BID,CECR1,CECR2,CECR5,DGCR2,DGCR6,LOC101929372,MICAL3,PEX26,PRODH,SLC25A18,TUBA8,USP18"
TCGA.AG.3891.01A	22	17630435	18232804	59	0.3431	NEUTRAL	NA	8	"ATP6V1E1,BCL2L13,BID,CECR1,CECR2,CECR5,LOC101929372,SLC25A18"
TCGA.AG.4009.01A	22	17669178	18003092	15	0.1501	NEUTRAL	NA	2	"CECR1,CECR2"
TCGA.AA.A00N.01A	22	17669178	18069874	31	0.3393	NEUTRAL	NA	4	"CECR1,CECR2,LOC101929372,SLC25A18"
TCGA.AG.3909.01A	22	17669178	18561113	83	0.0338	NEUTRAL	NA	9	"ATP6V1E1,BCL2L13,BID,CECR1,CECR2,LOC101929372,MICAL3,PEX26,SLC25A18"
TCGA.AA.A010.01A	22	17669178	18908794	118	0.3078	NEUTRAL	NA	13	"ATP6V1E1,BCL2L13,BID,CECR1,CECR2,DGCR6,LOC101929372,MICAL3,PEX26,PRODH,SLC25A18,TUBA8,USP18"
TCGA.AG.3611.01A	22	17672533	18165933	25	0.2477	NEUTRAL	NA	6	"ATP6V1E1,BCL2L13,CECR1,CECR2,LOC101929372,SLC25A18"
TCGA.AA.A01Q.01A	22	17687924	18910283	68	0.0736	NEUTRAL	NA	13	"ATP6V1E1,BCL2L13,BID,CECR1,CECR2,DGCR6,LOC101929372,MICAL3,PEX26,PRODH,SLC25A18,TUBA8,USP18"
TCGA.DT.5265	22	17760349	18877786	372	0.0351	NEUTRAL	NA	10	"ATP6V1E1,BCL2L13,BID,CECR2,LOC101929372,MICAL3,PEX26,SLC25A18,TUBA8,USP18"
TCGA.AA.3955	22	17768416	51186227	10950	0.0815	NEUTRAL	NA	417	Too-Many
TCGA.AA.3558	22	17899633	37722300	6581	0.0116	NEUTRAL	NA	230	Too-Many
TCGA.AG.3906.01A	22	17956070	19055576	110	0.0299	NEUTRAL	NA	13	"ATP6V1E1,BCL2L13,BID,CECR2,DGCR2,DGCR6,LOC101929372,MICAL3,PEX26,PRODH,SLC25A18,TUBA8,USP18"
TCGA.AG.4009.01A	22	18016746	18062630	10	-0.2535	NEUTRAL	NA	2	"CECR2,SLC25A18"
TCGA.AG.4009.01A	22	18063756	18613562	62	0.1101	NEUTRAL	NA	8	"ATP6V1E1,BCL2L13,BID,LOC101929372,MICAL3,PEX26,SLC25A18,TUBA8"
TCGA.AM.5820	22	18068784	30081714	3738	0.148	NEUTRAL	NA	144	Too-Many
TCGA.AA.A00N.01A	22	18070653	18314590	35	-0.2714	NEUTRAL	NA	6	"ATP6V1E1,BCL2L13,BID,LOC101929372,MICAL3,SLC25A18"
TCGA.AA.A00L.01A	22	18111289	21071932	237	0.3032	NEUTRAL	NA	44	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CDC45,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GNB1L,GP1BB,GSC2,HIRA,KLHL22,LOC388849,MED15,MICAL3,MRPL40,PEX26,PI4KA,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SLC25A1,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,ZDHHC8,ZNF74"
TCGA.AG.3611.01A	22	18171722	19438139	90	-0.1248	NEUTRAL	NA	18	"BCL2L13,BID,C22orf39,CLTCL1,DGCR14,DGCR2,DGCR6,GSC2,HIRA,MICAL3,MRPL40,PEX26,PRODH,SLC25A1,TSSK2,TUBA8,UFD1L,USP18"
TCGA.DM.A1DB	22	18229186	51186227	10759	-0.0147	NEUTRAL	NA	412	Too-Many
TCGA.AG.3891.01A	22	18273469	18374200	19	-0.2501	NEUTRAL	NA	1	MICAL3
TCGA.AA.A00N.01A	22	18324502	18561113	25	0.3613	NEUTRAL	NA	2	"MICAL3,PEX26"
TCGA.AG.A032.01A	22	18362051	51220568	2611	-0.0425	NEUTRAL	NA	412	Too-Many
TCGA.AG.3891.01A	22	18376545	18656485	29	0.2469	NEUTRAL	NA	4	"MICAL3,PEX26,TUBA8,USP18"
TCGA.CK.5914.01A	22	18561113	19263109	88	-0.447	NEUTRAL	NA	11	"CLTCL1,DGCR14,DGCR2,DGCR6,GSC2,PEX26,PRODH,SLC25A1,TSSK2,TUBA8,USP18"
TCGA.AA.3495	22	18629152	34353432	4956	0.3251	NEUTRAL	NA	188	Too-Many
TCGA.AA.3872	22	18631364	51186227	10583	0.0799	NEUTRAL	NA	408	Too-Many
TCGA.DM.A28K	22	18631364	51186227	10575	0.0003	NEUTRAL	NA	408	Too-Many
TCGA.AG.3891.01A	22	18893849	18913121	12	-0.4669	NEUTRAL	NA	2	"DGCR6,PRODH"
TCGA.AG.3909.01A	22	18893849	19338836	63	-0.1477	NEUTRAL	NA	9	"CLTCL1,DGCR14,DGCR2,DGCR6,GSC2,HIRA,PRODH,SLC25A1,TSSK2"
TCGA.AA.A00N.01A	22	18897478	19137146	35	-0.0636	NEUTRAL	NA	6	"DGCR14,DGCR2,DGCR6,GSC2,PRODH,TSSK2"
TCGA.A6.6781	22	18908640	51186227	9860	-0.069	NEUTRAL	NA	406	Too-Many
TCGA.AG.3891.01A	22	18918465	29938799	992	0.1478	NEUTRAL	NA	132	Too-Many
TCGA.CL.4957	22	19006983	51186227	10550	-0.4538	NEUTRAL	NA	405	Too-Many
TCGA.AA.A010.01A	22	19044461	19109584	6	-0.5099	NEUTRAL	NA	1	DGCR2
TCGA.AA.A01Q.01A	22	19170856	19393256	23	0.1518	NEUTRAL	NA	2	"CLTCL1,HIRA"
TCGA.AG.4009.01A	22	19175063	19394661	47	-0.0391	NEUTRAL	NA	2	"CLTCL1,HIRA"
TCGA.AG.3906.01A	22	19178768	20030856	123	-0.0435	NEUTRAL	NA	16	"ARVCF,C22orf29,C22orf39,CDC45,CLDN5,CLTCL1,COMT,GNB1L,GP1BB,HIRA,MRPL40,SEPT5,TANGO2,TBX1,TXNRD2,UFD1L"
TCGA.AF.3914.01A	22	19178768	21188795	269	-0.236	NEUTRAL	NA	31	"ARVCF,C22orf29,C22orf39,CDC45,CLDN5,CLTCL1,COMT,DGCR6L,DGCR8,GNB1L,GP1BB,HIRA,KLHL22,LOC388849,MED15,MRPL40,PI4KA,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SERPIND1,TANGO2,TBX1,TMEM191B,TRMT2A,TXNRD2,UFD1L,ZDHHC8,ZNF74"
TCGA.AG.A016.01A	22	19183789	19222014	18	-0.5105	NEUTRAL	NA	1	CLTCL1
TCGA.AA.A010.01A	22	19196384	19212948	9	-0.0965	NEUTRAL	NA	1	CLTCL1
TCGA.AA.A00N.01A	22	19207343	19338836	19	0.3658	NEUTRAL	NA	2	"CLTCL1,HIRA"
TCGA.AG.A016.01A	22	19223182	22730309	315	-0.0504	NEUTRAL	NA	53	"AIFM3,ARVCF,C22orf29,C22orf39,CCDC116,CDC45,CLDN5,CLTCL1,COMT,CRKL,DGCR6L,DGCR8,GNB1L,GP1BB,HIC2,HIRA,KLHL22,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MRPL40,P2RX6,PI4KA,PPIL2,PPM1F,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TXNRD2,UBE2L3,UFD1L,VPREB1,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.AG.A01W.01A	22	19248931	19395593	15	0.315	NEUTRAL	NA	2	"CLTCL1,HIRA"
TCGA.A6.5657	22	19372783	32752706	3989	0.2111	NEUTRAL	NA	173	Too-Many
TCGA.AA.A010.01A	22	19379576	19384263	3	-0.0615	NEUTRAL	NA	1	HIRA
TCGA.AD.6963	22	19385037	51186227	10445	-0.0095	NEUTRAL	NA	399	Too-Many
TCGA.AA.A00N.01A	22	19394661	19420028	5	-0.0215	NEUTRAL	NA	1	HIRA
TCGA.AG.3909.01A	22	19394661	19431756	7	-0.2618	NEUTRAL	NA	3	"C22orf39,HIRA,MRPL40"
TCGA.AA.A01Q.01A	22	19394661	19709708	43	-0.246	NEUTRAL	NA	7	"C22orf39,CDC45,CLDN5,HIRA,MRPL40,SEPT5,UFD1L"
TCGA.AG.A01W.01A	22	19396728	19675931	76	-0.2005	NEUTRAL	NA	6	"C22orf39,CDC45,CLDN5,HIRA,MRPL40,UFD1L"
TCGA.AG.4009.01A	22	19431756	19511671	30	-0.4339	NEUTRAL	NA	4	"C22orf39,CDC45,CLDN5,UFD1L"
TCGA.AG.3611.01A	22	19442211	19502235	24	-0.4409	NEUTRAL	NA	2	"CDC45,UFD1L"
TCGA.DT.5265	22	19443930	28964173	3081	-0.0094	NEUTRAL	NA	106	Too-Many
TCGA.AA.A010.01A	22	19455347	19702084	25	0.0725	NEUTRAL	NA	4	"CDC45,CLDN5,SEPT5,UFD1L"
TCGA.AG.3909.01A	22	19481780	20783772	118	-0.3943	NEUTRAL	NA	22	"ARVCF,C22orf29,CDC45,CLDN5,COMT,DGCR6L,DGCR8,GNB1L,GP1BB,LOC388849,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,TANGO2,TBX1,TMEM191B,TRMT2A,TXNRD2,ZDHHC8,ZNF74"
TCGA.AA.A00N.01A	22	19484843	19969409	73	-0.2912	NEUTRAL	NA	10	"ARVCF,C22orf29,CDC45,CLDN5,COMT,GNB1L,GP1BB,SEPT5,TBX1,TXNRD2"
TCGA.AG.3611.01A	22	19503998	31332460	913	-0.1351	NEUTRAL	NA	148	Too-Many
TCGA.AG.A01W.01A	22	19699417	30351699	1090	-0.0666	NEUTRAL	NA	126	Too-Many
TCGA.AG.4009.01A	22	19766716	20052018	47	-0.0057	NEUTRAL	NA	7	"ARVCF,C22orf29,COMT,GNB1L,TANGO2,TBX1,TXNRD2"
TCGA.A6.3810.01A	22	19766716	39358063	2276	-0.3655	NEUTRAL	NA	247	Too-Many
TCGA.CI.6621	22	19781822	20956162	228	-0.2626	NEUTRAL	NA	19	"ARVCF,C22orf29,COMT,DGCR6L,DGCR8,GNB1L,KLHL22,LOC388849,MED15,RANBP1,RIMBP3,RTN4R,SCARF2,TANGO2,TMEM191B,TRMT2A,TXNRD2,ZDHHC8,ZNF74"
TCGA.AA.A010.01A	22	19789492	19951052	25	0.3039	NEUTRAL	NA	4	"C22orf29,COMT,GNB1L,TXNRD2"
TCGA.AA.A01Q.01A	22	19808069	19918489	8	0.0156	NEUTRAL	NA	3	"C22orf29,GNB1L,TXNRD2"
TCGA.AA.A01Q.01A	22	19950010	20100039	41	-0.43	NEUTRAL	NA	5	"ARVCF,COMT,DGCR8,TANGO2,TRMT2A"
TCGA.AA.A010.01A	22	19951601	20050814	26	-0.4542	NEUTRAL	NA	3	"ARVCF,COMT,TANGO2"
TCGA.CM.6163	22	20068555	20282242	55	-0.3054	NEUTRAL	NA	6	"DGCR8,LOC388849,RANBP1,RTN4R,TRMT2A,ZDHHC8"
TCGA.AA.A00D.01A	22	20096376	24629824	356	0.3552	NEUTRAL	NA	67	"AIFM3,BCR,C22orf15,CABIN1,CCDC116,CHCHD10,CRKL,DDT,DDTL,DERL3,DGCR6L,DGCR8,DRICH1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,HIC2,IGLL1,IGLL5,KLHL22,LOC388849,LOC391322,LRRC74B,LZTR1,MAPK1,MED15,MIF,MMP11,P2RX6,PI4KA,PPIL2,PPM1F,PRAME,RAB36,RANBP1,RGL4,RIMBP3,RIMBP3B,RIMBP3C,RSPH14,RTN4R,SCARF2,SDF2L1,SERPIND1,SLC2A11,SLC7A4,SMARCB1,SNAP29,SUSD2,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,UBE2L3,VPREB1,VPREB3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF70,ZNF74"
TCGA.AG.3906.01A	22	20100039	20760620	30	-0.0885	NEUTRAL	NA	9	"DGCR6L,LOC388849,RANBP1,RIMBP3,RTN4R,TMEM191B,TRMT2A,ZDHHC8,ZNF74"
TCGA.AA.A01Q.01A	22	20100416	21334272	131	4.00E-04	NEUTRAL	NA	17	"AIFM3,CRKL,DGCR6L,KLHL22,LOC388849,MED15,PI4KA,RANBP1,RIMBP3,RTN4R,SCARF2,SERPIND1,SNAP29,TMEM191B,TRMT2A,ZDHHC8,ZNF74"
TCGA.AA.3815.01A	22	20101222	20230890	20	-0.4767	NEUTRAL	NA	5	"LOC388849,RANBP1,RTN4R,TRMT2A,ZDHHC8"
TCGA.AA.3815.01A	22	20236598	51223594	3354	0.033	NEUTRAL	NA	380	Too-Many
TCGA.CK.4952.01A	22	20251947	37688009	1960	-0.0881	NEUTRAL	NA	192	Too-Many
TCGA.CM.6163	22	20296539	51186227	10155	-0.0262	NEUTRAL	NA	378	Too-Many
TCGA.DC.6160.01A	22	20655334	21578465	79	-0.1733	NEUTRAL	NA	14	"AIFM3,CRKL,KLHL22,LRRC74B,LZTR1,MED15,P2RX6,PI4KA,SCARF2,SERPIND1,SLC7A4,SNAP29,THAP7,ZNF74"
TCGA.AA.3930.01A	22	20717836	46742272	3008	-0.3602	NEUTRAL	NA	335	Too-Many
TCGA.AG.A00H.01A	22	20720810	21153371	60	-0.19	NEUTRAL	NA	6	"KLHL22,MED15,PI4KA,SCARF2,SERPIND1,ZNF74"
TCGA.A6.3808.01A	22	20721789	20929399	40	-0.3408	NEUTRAL	NA	4	"KLHL22,MED15,SCARF2,ZNF74"
TCGA.CK.5914.01A	22	20755518	21087242	58	-0.2175	NEUTRAL	NA	5	"KLHL22,MED15,PI4KA,SCARF2,ZNF74"
TCGA.AG.3909.01A	22	20784665	20929399	17	0.2899	NEUTRAL	NA	3	"KLHL22,MED15,SCARF2"
TCGA.AG.3906.01A	22	20812065	21165191	60	-0.0933	NEUTRAL	NA	4	"KLHL22,MED15,PI4KA,SERPIND1"
TCGA.AA.A010.01A	22	20861913	20940807	17	0.3119	NEUTRAL	NA	1	MED15
TCGA.AG.4009.01A	22	20861913	20940807	15	0.0571	NEUTRAL	NA	1	MED15
TCGA.AA.A00N.01A	22	20861913	21075538	32	-0.1184	NEUTRAL	NA	2	"MED15,PI4KA"
TCGA.AG.3909.01A	22	20936859	21075538	13	-0.2555	NEUTRAL	NA	2	"MED15,PI4KA"
TCGA.CI.6621	22	20959690	36759814	5437	0.0762	NEUTRAL	NA	166	Too-Many
TCGA.AA.A010.01A	22	21045587	21088007	20	0.1647	NEUTRAL	NA	1	PI4KA
TCGA.AG.4009.01A	22	21072939	21288057	50	0.0463	NEUTRAL	NA	4	"CRKL,PI4KA,SERPIND1,SNAP29"
TCGA.A6.3808.01A	22	21098875	21411342	94	-0.3405	NEUTRAL	NA	10	"AIFM3,CRKL,LRRC74B,LZTR1,P2RX6,PI4KA,SERPIND1,SLC7A4,SNAP29,THAP7"
TCGA.AG.A00H.01A	22	21161602	38234478	1423	-0.14	NEUTRAL	NA	198	Too-Many
TCGA.AA.A010.01A	22	21165191	21288057	15	0.0465	NEUTRAL	NA	3	"CRKL,PI4KA,SNAP29"
TCGA.AA.A00N.01A	22	21174773	21414613	68	-0.5113	NEUTRAL	NA	9	"AIFM3,CRKL,LRRC74B,LZTR1,P2RX6,PI4KA,SLC7A4,SNAP29,THAP7"
TCGA.AG.3909.01A	22	21272181	22024553	62	-0.3767	NEUTRAL	NA	16	"AIFM3,CCDC116,CRKL,HIC2,LRRC74B,LZTR1,P2RX6,PPIL2,RIMBP3B,RIMBP3C,SDF2L1,SLC7A4,THAP7,TMEM191C,UBE2L3,YDJC"
TCGA.AG.4009.01A	22	21303951	21570165	38	-0.4852	NEUTRAL	NA	7	"AIFM3,CRKL,LRRC74B,LZTR1,P2RX6,SLC7A4,THAP7"
TCGA.AA.A00A.01A	22	21322171	24640486	251	0.3577	NEUTRAL	NA	50	"AIFM3,BCR,C22orf15,CABIN1,CCDC116,CHCHD10,DDT,DDTL,DERL3,DRICH1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,HIC2,IGLL1,IGLL5,LOC391322,LRRC74B,LZTR1,MAPK1,MIF,MMP11,P2RX6,PPIL2,PPM1F,PRAME,RAB36,RGL4,RIMBP3B,RIMBP3C,RSPH14,SDF2L1,SLC2A11,SLC7A4,SMARCB1,SUSD2,THAP7,TMEM191C,TOP3B,UBE2L3,VPREB1,VPREB3,YDJC,YPEL1,ZNF280A,ZNF280B,ZNF70"
TCGA.AA.A00L.01A	22	21322171	25960989	363	0.3674	NEUTRAL	NA	65	"ADORA2A,ADRBK2,AIFM3,BCR,C22orf15,CABIN1,CCDC116,CHCHD10,CRYBB2,CRYBB3,DDT,DDTL,DERL3,DRICH1,GGT1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,HIC2,IGLL1,IGLL5,KIAA1671,LOC391322,LRP5L,LRRC74B,LRRC75B,LZTR1,MAPK1,MIF,MMP11,P2RX6,PIWIL3,PPIL2,PPM1F,PRAME,RAB36,RGL4,RIMBP3B,RIMBP3C,RSPH14,SDF2L1,SGSM1,SLC2A11,SLC7A4,SMARCB1,SNRPD3,SPECC1L,SUSD2,THAP7,TMEM191C,TMEM211,TOP3B,UBE2L3,UPB1,VPREB1,VPREB3,YDJC,YPEL1,ZNF280A,ZNF280B,ZNF70"
TCGA.AG.3906.01A	22	21343023	21570165	24	-0.1906	NEUTRAL	NA	5	"LRRC74B,LZTR1,P2RX6,SLC7A4,THAP7"
TCGA.AA.A010.01A	22	21351479	21579632	32	0.1151	NEUTRAL	NA	5	"LRRC74B,LZTR1,P2RX6,SLC7A4,THAP7"
TCGA.AG.A015.01A	22	21355527	23223249	122	-0.2035	NEUTRAL	NA	22	"CCDC116,GGTLC2,HIC2,LRRC74B,MAPK1,P2RX6,PPIL2,PPM1F,PRAME,RIMBP3B,RIMBP3C,SDF2L1,SLC7A4,THAP7,TMEM191C,TOP3B,UBE2L3,VPREB1,YDJC,YPEL1,ZNF280A,ZNF280B"
TCGA.AA.A01Q.01A	22	21369416	22020303	33	-0.3842	NEUTRAL	NA	12	"CCDC116,HIC2,LRRC74B,P2RX6,PPIL2,RIMBP3B,RIMBP3C,SDF2L1,SLC7A4,TMEM191C,UBE2L3,YDJC"
TCGA.AA.A02K.01A	22	21370180	32000815	1095	-0.3541	NEUTRAL	NA	128	Too-Many
TCGA.CK.5914.01A	22	21400224	21982660	36	-0.0645	NEUTRAL	NA	7	"HIC2,LRRC74B,RIMBP3B,RIMBP3C,TMEM191C,UBE2L3,YDJC"
TCGA.AG.4009.01A	22	21570759	21799159	4	0.3565	NEUTRAL	NA	3	"HIC2,RIMBP3B,RIMBP3C"
TCGA.AG.3906.01A	22	21570759	22453110	69	0.1344	NEUTRAL	NA	13	"CCDC116,HIC2,MAPK1,PPIL2,PPM1F,RIMBP3B,RIMBP3C,SDF2L1,TMEM191C,TOP3B,UBE2L3,YDJC,YPEL1"
TCGA.AH.6549.01A	22	21576102	51223594	3356	-0.3804	NEUTRAL	NA	362	Too-Many
TCGA.AA.A00N.01A	22	21738100	22020303	31	-0.4151	NEUTRAL	NA	9	"CCDC116,HIC2,PPIL2,RIMBP3B,RIMBP3C,SDF2L1,TMEM191C,UBE2L3,YDJC"
TCGA.AA.A010.01A	22	21738100	22038994	41	-0.3949	NEUTRAL	NA	9	"CCDC116,HIC2,PPIL2,RIMBP3B,RIMBP3C,SDF2L1,TMEM191C,UBE2L3,YDJC"
TCGA.AY.4071	22	21809184	51186227	9897	-0.051	NEUTRAL	NA	360	Too-Many
TCGA.AA.3862.01A	22	21968773	22024553	14	0.2614	NEUTRAL	NA	5	"CCDC116,PPIL2,SDF2L1,UBE2L3,YDJC"
TCGA.AA.3861.01A	22	21998141	22385320	58	-0.2837	NEUTRAL	NA	6	"MAPK1,PPIL2,PPM1F,SDF2L1,TOP3B,YPEL1"
TCGA.AA.3862.01A	22	22024836	22385320	53	-0.4994	NEUTRAL	NA	5	"MAPK1,PPIL2,PPM1F,TOP3B,YPEL1"
TCGA.AA.A00N.01A	22	22035556	22329965	50	-0.4275	NEUTRAL	NA	5	"MAPK1,PPIL2,PPM1F,TOP3B,YPEL1"
TCGA.A6.3808.01A	22	22035556	22977659	88	-0.2468	NEUTRAL	NA	9	"MAPK1,PPIL2,PPM1F,PRAME,TOP3B,VPREB1,YPEL1,ZNF280A,ZNF280B"
TCGA.AA.A010.01A	22	22040718	22453110	49	0.1349	NEUTRAL	NA	5	"MAPK1,PPIL2,PPM1F,TOP3B,YPEL1"
TCGA.CK.5914.01A	22	22042310	22329965	42	-0.3471	NEUTRAL	NA	5	"MAPK1,PPIL2,PPM1F,TOP3B,YPEL1"
TCGA.AG.3909.01A	22	22042984	22329965	36	-0.3927	NEUTRAL	NA	5	"MAPK1,PPIL2,PPM1F,TOP3B,YPEL1"
TCGA.AG.4009.01A	22	22048043	22293852	18	-0.0413	NEUTRAL	NA	4	"MAPK1,PPIL2,PPM1F,YPEL1"
TCGA.AF.3914.01A	22	22048043	30928465	810	-0.2251	NEUTRAL	NA	99	"ADORA2A,ADRBK2,AP1B1,ASCC2,ASPHD2,BCR,C22orf15,C22orf31,CABIN1,CABP7,CCDC117,CCDC157,CHCHD10,CHEK2,CRYBA4,CRYBB1,CRYBB2,CRYBB3,DDT,DDTL,DERL3,DRICH1,EMID1,EWSR1,GAS2L1,GATSL3,GGT1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,HORMAD2,HPS4,HSCB,IGLL1,IGLL5,KIAA1671,KREMEN1,LIF,LOC391322,LRP5L,LRRC75B,MAPK1,MIF,MMP11,MN1,MTFP1,MTMR3,MYO18B,NEFH,NF2,NIPSNAP1,OSM,PITPNB,PIWIL3,PPIL2,PPM1F,PRAME,RAB36,RASL10A,RFPL1,RGL4,RHBDD3,RNF215,RSPH14,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SEZ6L,SF3A1,SGSM1,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SRRD,SUSD2,TBC1D10A,TFIP11,THOC5,TMEM211,TOP3B,TPST2,TTC28,UPB1,UQCR10,VPREB1,VPREB3,XBP1,YPEL1,ZMAT5,ZNF280A,ZNF280B,ZNF70,ZNRF3"
TCGA.AA.A01Q.01A	22	22057627	22288354	16	0.0139	NEUTRAL	NA	3	"MAPK1,PPM1F,YPEL1"
TCGA.CM.6165.01A	22	22058314	51223594	3336	-0.1053	NEUTRAL	NA	353	Too-Many
TCGA.QG.A5Z1	22	22180182	22335297	30	-0.2132	NEUTRAL	NA	3	"MAPK1,PPM1F,TOP3B"
TCGA.AA.3678	22	22257651	22568127	165	-0.3737	NEUTRAL	NA	2	"PPM1F,TOP3B"
TCGA.AG.A00Y.01A	22	22285482	24039939	137	-0.2871	NEUTRAL	NA	15	"BCR,DRICH1,GGTLC2,GNAZ,IGLL1,IGLL5,PPM1F,PRAME,RAB36,RGL4,RSPH14,TOP3B,VPREB1,ZNF280A,ZNF280B"
TCGA.AG.4009.01A	22	22319615	24040983	130	0.0031	NEUTRAL	NA	14	"BCR,DRICH1,GGTLC2,GNAZ,IGLL1,IGLL5,PRAME,RAB36,RGL4,RSPH14,TOP3B,VPREB1,ZNF280A,ZNF280B"
TCGA.AD.6890	22	22332875	22568127	142	-0.4865	NEUTRAL	NA	1	TOP3B
TCGA.A6.5661	22	22333024	43398961	6667	-0.4131	NEUTRAL	NA	273	Too-Many
TCGA.AG.3909.01A	22	22385320	22899155	30	0.0893	NEUTRAL	NA	4	"PRAME,VPREB1,ZNF280A,ZNF280B"
TCGA.AA.3862.01A	22	22385599	23248465	66	0.2454	NEUTRAL	NA	6	"GGTLC2,IGLL5,PRAME,VPREB1,ZNF280A,ZNF280B"
TCGA.AA.3850	22	22502178	26196056	1002	0.37785	NEUTRAL	NA	47	"ADORA2A,ADRBK2,BCR,C22orf15,CABIN1,CHCHD10,CRYBB2,CRYBB3,DDT,DDTL,DERL3,DRICH1,GGT1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,IGLL1,IGLL5,KIAA1671,LOC391322,LRP5L,LRRC75B,MIF,MMP11,MYO18B,PIWIL3,PRAME,RAB36,RGL4,RSPH14,SGSM1,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SUSD2,TMEM211,UPB1,VPREB1,VPREB3,ZNF280A,ZNF280B,ZNF70"
TCGA.QG.A5Z1	22	22513578	23431346	212	-0.0608	NEUTRAL	NA	8	"GGTLC2,GNAZ,IGLL5,PRAME,RSPH14,VPREB1,ZNF280A,ZNF280B"
TCGA.AG.3906.01A	22	22516516	22786269	18	-0.5072	NEUTRAL	NA	1	VPREB1
TCGA.AA.3982	22	22522862	22524870	4	-0.3566	NEUTRAL	NA	0	None
TCGA.AA.3982	22	22525198	26250644	1024	0.314	NEUTRAL	NA	47	"ADORA2A,ADRBK2,BCR,C22orf15,CABIN1,CHCHD10,CRYBB2,CRYBB3,DDT,DDTL,DERL3,DRICH1,GGT1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,IGLL1,IGLL5,KIAA1671,LOC391322,LRP5L,LRRC75B,MIF,MMP11,MYO18B,PIWIL3,PRAME,RAB36,RGL4,RSPH14,SGSM1,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SUSD2,TMEM211,UPB1,VPREB1,VPREB3,ZNF280A,ZNF280B,ZNF70"
TCGA.AD.6890	22	22568186	49535681	9212	-0.0431	NEUTRAL	NA	313	Too-Many
TCGA.AA.3678	22	22568186	51186227	9725	0	NEUTRAL	NA	348	Too-Many
TCGA.CI.6619	22	22708407	28382389	2233	-0.1585	NEUTRAL	NA	57	"ADORA2A,ADRBK2,ASPHD2,BCR,C22orf15,CABIN1,CHCHD10,CRYBA4,CRYBB1,CRYBB2,CRYBB3,DDT,DDTL,DERL3,DRICH1,GGT1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,HPS4,IGLL1,IGLL5,KIAA1671,LOC391322,LRP5L,LRRC75B,MIF,MMP11,MN1,MYO18B,PITPNB,PIWIL3,PRAME,RAB36,RGL4,RSPH14,SEZ6L,SGSM1,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SRRD,SUSD2,TFIP11,TMEM211,TPST2,TTC28,UPB1,VPREB3,ZNF280A,ZNF280B,ZNF70"
TCGA.F5.6812	22	22727570	51186227	9668	-0.4895	NEUTRAL	NA	347	Too-Many
TCGA.CK.5914.01A	22	22786269	22990158	24	0.0576	NEUTRAL	NA	4	"GGTLC2,PRAME,ZNF280A,ZNF280B"
TCGA.AG.3906.01A	22	22842045	23247003	38	-0.1737	NEUTRAL	NA	5	"GGTLC2,IGLL5,PRAME,ZNF280A,ZNF280B"
TCGA.DM.A28F	22	22930769	27779271	1885	-0.0634	NEUTRAL	NA	51	"ADORA2A,ADRBK2,ASPHD2,BCR,C22orf15,CABIN1,CHCHD10,CRYBA4,CRYBB1,CRYBB2,CRYBB3,DDT,DDTL,DERL3,DRICH1,GGT1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,HPS4,IGLL1,IGLL5,KIAA1671,LOC391322,LRP5L,LRRC75B,MIF,MMP11,MYO18B,PIWIL3,RAB36,RGL4,RSPH14,SEZ6L,SGSM1,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SRRD,SUSD2,TFIP11,TMEM211,TPST2,UPB1,VPREB3,ZNF70"
TCGA.A6.3808.01A	22	22990158	25129989	284	-0.3507	NEUTRAL	NA	35	"ADORA2A,BCR,C22orf15,CABIN1,CHCHD10,DDT,DDTL,DERL3,DRICH1,GGT1,GGT5,GGTLC2,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,IGLL1,IGLL5,LOC391322,LRRC75B,MIF,MMP11,PIWIL3,RAB36,RGL4,RSPH14,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SUSD2,UPB1,VPREB3,ZNF70"
TCGA.DM.A1D7	22	23149621	23324838	33	-0.2241	NEUTRAL	NA	1	IGLL5
TCGA.AG.A015.01A	22	23241643	50869595	2355	-0.1349	NEUTRAL	NA	326	Too-Many
TCGA.AG.3906.01A	22	23248465	23973965	54	0.2342	NEUTRAL	NA	6	"BCR,DRICH1,GNAZ,IGLL1,RAB36,RSPH14"
TCGA.AA.3861.01A	22	23264719	25003859	217	-0.0298	NEUTRAL	NA	32	"ADORA2A,BCR,C22orf15,CABIN1,CHCHD10,DDT,DDTL,DERL3,DRICH1,GGT1,GGT5,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,IGLL1,LOC391322,LRRC75B,MIF,MMP11,RAB36,RGL4,RSPH14,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SUSD2,UPB1,VPREB3,ZNF70"
TCGA.AA.3862.01A	22	23264719	25003859	222	-0.1866	NEUTRAL	NA	32	"ADORA2A,BCR,C22orf15,CABIN1,CHCHD10,DDT,DDTL,DERL3,DRICH1,GGT1,GGT5,GNAZ,GSTT1,GSTT2,GSTT2B,GUCD1,IGLL1,LOC391322,LRRC75B,MIF,MMP11,RAB36,RGL4,RSPH14,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SUSD2,UPB1,VPREB3,ZNF70"
TCGA.DM.A1D7	22	23326826	23364586	15	0.1841	NEUTRAL	NA	0	None
TCGA.DM.A1D7	22	23369825	23475761	31	-0.2311	NEUTRAL	NA	2	"GNAZ,RSPH14"
TCGA.AA.A00N.01A	22	23401643	23615799	30	-0.2099	NEUTRAL	NA	4	"BCR,GNAZ,RAB36,RSPH14"
TCGA.CK.5914.01A	22	23403940	23613653	27	-0.4781	NEUTRAL	NA	4	"BCR,GNAZ,RAB36,RSPH14"
TCGA.AG.A016.01A	22	23403940	51220568	2460	-0.0744	NEUTRAL	NA	343	Too-Many
TCGA.AG.3909.01A	22	23437853	24040983	60	-0.0245	NEUTRAL	NA	7	"BCR,DRICH1,GNAZ,IGLL1,RAB36,RGL4,RSPH14"
TCGA.DM.A1D7	22	23477969	30233445	2500	0.0478	NEUTRAL	NA	73	"ADORA2A,ADRBK2,AP1B1,ASCC2,ASPHD2,BCR,C22orf15,C22orf31,CABIN1,CABP7,CCDC117,CHCHD10,CHEK2,CRYBA4,CRYBB1,CRYBB2,CRYBB3,DDT,DDTL,DERL3,DRICH1,EMID1,EWSR1,GAS2L1,GGT1,GGT5,GSTT1,GSTT2,GSTT2B,GUCD1,HPS4,HSCB,IGLL1,KIAA1671,KREMEN1,LOC391322,LRP5L,LRRC75B,MIF,MMP11,MN1,MYO18B,NEFH,NF2,NIPSNAP1,PITPNB,PIWIL3,RAB36,RASL10A,RFPL1,RGL4,RHBDD3,RSPH14,SEZ6L,SGSM1,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SRRD,SUSD2,TFIP11,THOC5,TMEM211,TPST2,TTC28,UPB1,UQCR10,VPREB3,XBP1,ZMAT5,ZNF70,ZNRF3"
TCGA.CK.5914.01A	22	23615204	23637159	10	0.0828	NEUTRAL	NA	1	BCR
TCGA.AA.A01Q.01A	22	23637159	24121374	25	-0.0437	NEUTRAL	NA	9	"BCR,C22orf15,CHCHD10,DRICH1,IGLL1,MMP11,RGL4,VPREB3,ZNF70"
TCGA.AF.2693	22	23717004	39273241	5473	0.2586	NEUTRAL	NA	192	Too-Many
TCGA.AG.4015	22	23869783	51186227	9381	-0.3979	NEUTRAL	NA	338	Too-Many
TCGA.AA.A00N.01A	22	23955400	23968105	10	-0.2005	NEUTRAL	NA	1	DRICH1
TCGA.AG.3890	22	24022630	24192878	47	-0.4912	NEUTRAL	NA	8	"C22orf15,CHCHD10,DERL3,MMP11,RGL4,SMARCB1,VPREB3,ZNF70"
TCGA.AG.3906.01A	22	24034190	24040983	10	-0.3766	NEUTRAL	NA	1	RGL4
TCGA.AG.3906.01A	22	24085935	24179025	17	0.1615	NEUTRAL	NA	7	"C22orf15,CHCHD10,DERL3,MMP11,SMARCB1,VPREB3,ZNF70"
TCGA.CK.5914.01A	22	24085935	24181092	31	-0.3035	NEUTRAL	NA	7	"C22orf15,CHCHD10,DERL3,MMP11,SMARCB1,VPREB3,ZNF70"
TCGA.AG.3909.01A	22	24085935	25153835	153	-0.4375	NEUTRAL	NA	26	"ADORA2A,C22orf15,CABIN1,CHCHD10,DDT,DDTL,DERL3,GGT1,GGT5,GSTT1,GSTT2,GSTT2B,GUCD1,LOC391322,LRRC75B,MIF,MMP11,PIWIL3,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SUSD2,UPB1,VPREB3,ZNF70"
TCGA.AG.4009.01A	22	24143100	24324777	28	0.2869	NEUTRAL	NA	8	"DDT,DDTL,DERL3,GSTT2,GSTT2B,MIF,SLC2A11,SMARCB1"
TCGA.AA.3679	22	24176052	51186227	9327	-0.0232	NEUTRAL	NA	330	Too-Many
TCGA.AG.3890	22	24193102	24243735	24	-0.0278	NEUTRAL	NA	2	"MIF,SLC2A11"
TCGA.AA.A00Q.01A	22	24199601	24236947	13	-0.4693	NEUTRAL	NA	2	"MIF,SLC2A11"
TCGA.AA.A01Q.01A	22	24219177	25123928	122	-0.1231	NEUTRAL	NA	19	"ADORA2A,CABIN1,DDT,DDTL,GGT1,GGT5,GSTT1,GSTT2,GSTT2B,GUCD1,LOC391322,LRRC75B,MIF,PIWIL3,SLC2A11,SNRPD3,SPECC1L,SUSD2,UPB1"
TCGA.AG.3906.01A	22	24225919	29141803	323	-0.0222	NEUTRAL	NA	40	"ADORA2A,ADRBK2,ASPHD2,CABIN1,CHEK2,CRYBA4,CRYBB1,CRYBB2,CRYBB3,DDT,DDTL,GGT1,GGT5,GSTT1,GSTT2,GSTT2B,GUCD1,HPS4,HSCB,KIAA1671,LOC391322,LRP5L,LRRC75B,MIF,MN1,MYO18B,PITPNB,PIWIL3,SEZ6L,SGSM1,SLC2A11,SNRPD3,SPECC1L,SRRD,SUSD2,TFIP11,TMEM211,TPST2,TTC28,UPB1"
TCGA.AG.3890	22	24292263	51186227	9254	-0.0445	NEUTRAL	NA	326	Too-Many
TCGA.AA.A00Q.01A	22	24299881	24455638	22	0.3733	NEUTRAL	NA	7	"CABIN1,DDT,DDTL,GSTT1,GSTT2,GSTT2B,LOC391322"
TCGA.QG.A5Z1	22	24425113	27033320	988	-0.0347	NEUTRAL	NA	27	"ADORA2A,ADRBK2,ASPHD2,CABIN1,CRYBA4,CRYBB1,CRYBB2,CRYBB3,GGT1,GGT5,GUCD1,HPS4,KIAA1671,LRP5L,LRRC75B,MYO18B,PIWIL3,SEZ6L,SGSM1,SNRPD3,SPECC1L,SRRD,SUSD2,TFIP11,TMEM211,TPST2,UPB1"
TCGA.AA.A00N.01A	22	24431868	24451298	8	0.0215	NEUTRAL	NA	1	CABIN1
TCGA.AG.4009.01A	22	24431868	24456337	11	-0.1863	NEUTRAL	NA	1	CABIN1
TCGA.CK.5914.01A	22	24431868	25250899	134	-0.1394	NEUTRAL	NA	12	"ADORA2A,CABIN1,GGT1,GGT5,GUCD1,LRRC75B,PIWIL3,SGSM1,SNRPD3,SPECC1L,SUSD2,UPB1"
TCGA.AA.3509.01A	22	24431868	29025560	346	-0.0754	NEUTRAL	NA	30	"ADORA2A,ADRBK2,ASPHD2,CABIN1,CRYBA4,CRYBB1,CRYBB2,CRYBB3,GGT1,GGT5,GUCD1,HPS4,KIAA1671,LRP5L,LRRC75B,MN1,MYO18B,PITPNB,PIWIL3,SEZ6L,SGSM1,SNRPD3,SPECC1L,SRRD,SUSD2,TFIP11,TMEM211,TPST2,TTC28,UPB1"
TCGA.AG.A01L.01A	22	24431868	51220568	2398	-0.4681	NEUTRAL	NA	321	Too-Many
TCGA.AA.A00Q.01A	22	24456337	24953594	76	0.0334	NEUTRAL	NA	8	"ADORA2A,CABIN1,GGT5,GUCD1,SNRPD3,SPECC1L,SUSD2,UPB1"
TCGA.AA.A00N.01A	22	24466704	24480907	6	-0.1393	NEUTRAL	NA	1	CABIN1
TCGA.AG.4009.01A	22	24480491	24640486	28	0.0277	NEUTRAL	NA	3	"CABIN1,GGT5,SUSD2"
TCGA.AA.A00N.01A	22	24530221	25153835	100	-0.2891	NEUTRAL	NA	11	"ADORA2A,CABIN1,GGT1,GGT5,GUCD1,LRRC75B,PIWIL3,SNRPD3,SPECC1L,SUSD2,UPB1"
TCGA.AG.4009.01A	22	24730360	24836540	10	-0.3557	NEUTRAL	NA	2	"ADORA2A,SPECC1L"
TCGA.AG.4009.01A	22	24891322	26776170	166	0.1453	NEUTRAL	NA	15	"ADRBK2,CRYBB2,CRYBB3,GGT1,GUCD1,KIAA1671,LRP5L,LRRC75B,MYO18B,PIWIL3,SEZ6L,SGSM1,SNRPD3,TMEM211,UPB1"
TCGA.AA.3861.01A	22	25119060	32545510	816	-0.1975	NEUTRAL	NA	80	"ADRBK2,AP1B1,ASCC2,ASPHD2,C22orf24,C22orf31,CABP7,CCDC117,CCDC157,CHEK2,CRYBA4,CRYBB1,CRYBB2,CRYBB3,DEPDC5,DRG1,DUSP18,EIF4ENIF1,EMID1,EWSR1,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HPS4,HSCB,INPP5J,KIAA1671,KREMEN1,LIF,LIMK2,LRP5L,MN1,MORC2,MTFP1,MTMR3,MYO18B,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PITPNB,PIWIL3,PLA2G3,PRR14L,RASL10A,RFPL1,RHBDD3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SEZ6L,SF3A1,SFI1,SGSM1,SLC35E4,SLC5A1,SMTN,SRRD,TBC1D10A,TCN2,TFIP11,THOC5,TMEM211,TPST2,TTC28,UQCR10,XBP1,YWHAH,ZMAT5,ZNRF3"
TCGA.AA.3862.01A	22	25119060	32545510	815	-0.3012	NEUTRAL	NA	80	"ADRBK2,AP1B1,ASCC2,ASPHD2,C22orf24,C22orf31,CABP7,CCDC117,CCDC157,CHEK2,CRYBA4,CRYBB1,CRYBB2,CRYBB3,DEPDC5,DRG1,DUSP18,EIF4ENIF1,EMID1,EWSR1,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HPS4,HSCB,INPP5J,KIAA1671,KREMEN1,LIF,LIMK2,LRP5L,MN1,MORC2,MTFP1,MTMR3,MYO18B,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PITPNB,PIWIL3,PLA2G3,PRR14L,RASL10A,RFPL1,RHBDD3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SEZ6L,SF3A1,SFI1,SGSM1,SLC35E4,SLC5A1,SMTN,SRRD,TBC1D10A,TCN2,TFIP11,THOC5,TMEM211,TPST2,TTC28,UQCR10,XBP1,YWHAH,ZMAT5,ZNRF3"
TCGA.AA.A00A.01A	22	25155794	25308573	7	-0.0666	NEUTRAL	NA	2	"PIWIL3,SGSM1"
TCGA.CA.6719	22	25226156	51186227	9096	-0.4229	NEUTRAL	NA	309	Too-Many
TCGA.AG.3909.01A	22	25275382	26168263	57	0.1001	NEUTRAL	NA	8	"ADRBK2,CRYBB2,CRYBB3,KIAA1671,LRP5L,MYO18B,SGSM1,TMEM211"
TCGA.AA.A00N.01A	22	25301024	26166797	57	0.3088	NEUTRAL	NA	8	"ADRBK2,CRYBB2,CRYBB3,KIAA1671,LRP5L,MYO18B,SGSM1,TMEM211"
TCGA.AA.A00Q.01A	22	25334068	25755743	17	-0.0023	NEUTRAL	NA	5	"CRYBB2,CRYBB3,KIAA1671,LRP5L,TMEM211"
TCGA.CK.5914.01A	22	25570206	26168263	48	0.0186	NEUTRAL	NA	6	"ADRBK2,CRYBB2,CRYBB3,KIAA1671,LRP5L,MYO18B"
TCGA.NH.A8F7	22	25661697	25925357	66	0.2819	NEUTRAL	NA	1	LRP5L
TCGA.RU.A8FL	22	25729815	26344023	267	-0.1682	NEUTRAL	NA	3	"ADRBK2,LRP5L,MYO18B"
TCGA.EI.7004	22	25755648	25900822	39	0.0347	NEUTRAL	NA	1	LRP5L
TCGA.A6.6141	22	25757267	51186227	8914	-0.0476	NEUTRAL	NA	304	Too-Many
TCGA.F4.6569	22	25758789	51186227	8922	-0.0701	NEUTRAL	NA	304	Too-Many
TCGA.EI.7004	22	25904256	36700174	4186	-0.3722	NEUTRAL	NA	98	"ADRBK2,AP1B1,APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,ASCC2,ASPHD2,BPIFC,C22orf24,C22orf31,C22orf42,CABP7,CCDC117,CCDC157,CHEK2,CRYBA4,CRYBB1,DEPDC5,DRG1,DUSP18,EIF4ENIF1,EMID1,EWSR1,FBXO7,GAL3ST1,GAS2L1,GATSL3,HMGXB4,HMOX1,HORMAD2,HPS4,HSCB,INPP5J,ISX,KREMEN1,LARGE,LIF,LIMK2,MB,MCM5,MN1,MORC2,MTFP1,MTMR3,MYH9,MYO18B,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PITPNB,PLA2G3,PRR14L,RASD2,RASL10A,RBFOX2,RFPL1,RFPL2,RFPL3,RHBDD3,RNF185,RNF215,RTCB,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SEZ6L,SF3A1,SFI1,SLC35E4,SLC5A1,SLC5A4,SMTN,SRRD,SYN3,TBC1D10A,TCN2,TFIP11,THOC5,TIMP3,TOM1,TPST2,TTC28,UQCR10,XBP1,YWHAH,ZMAT5,ZNRF3"
TCGA.AA.3814	22	25918708	51186227	8869	0.002	NEUTRAL	NA	303	Too-Many
TCGA.AA.3655	22	25925077	51186227	8858	-0.0341	NEUTRAL	NA	303	Too-Many
TCGA.NH.A8F7	22	25925640	51186227	8805	-0.0441	NEUTRAL	NA	303	Too-Many
TCGA.AA.A01Q.01A	22	25960989	26773589	48	0.2949	NEUTRAL	NA	3	"ADRBK2,MYO18B,SEZ6L"
TCGA.AA.A00A.01A	22	26164063	26694920	8	-0.113	NEUTRAL	NA	2	"MYO18B,SEZ6L"
TCGA.AA.A00L.01A	22	26164063	26694920	15	0.0715	NEUTRAL	NA	2	"MYO18B,SEZ6L"
TCGA.AA.A00D.01A	22	26164063	26701897	10	-0.1401	NEUTRAL	NA	2	"MYO18B,SEZ6L"
TCGA.AA.3850	22	26196348	26650882	290	0.08535	NEUTRAL	NA	2	"MYO18B,SEZ6L"
TCGA.AA.3982	22	26252864	26671038	262	0.0475	NEUTRAL	NA	2	"MYO18B,SEZ6L"
TCGA.AA.3549	22	26438106	33817497	2672	-0.3483	NEUTRAL	NA	81	"AP1B1,ASCC2,ASPHD2,BPIFC,C22orf24,C22orf31,C22orf42,CABP7,CCDC117,CCDC157,CHEK2,CRYBA4,CRYBB1,DEPDC5,DRG1,DUSP18,EIF4ENIF1,EMID1,EWSR1,FBXO7,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HPS4,HSCB,INPP5J,KREMEN1,LARGE,LIF,LIMK2,MN1,MORC2,MTFP1,MTMR3,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PITPNB,PLA2G3,PRR14L,RASL10A,RFPL1,RFPL2,RFPL3,RHBDD3,RNF185,RNF215,RTCB,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SEZ6L,SF3A1,SFI1,SLC35E4,SLC5A1,SLC5A4,SMTN,SRRD,SYN3,TBC1D10A,TCN2,TFIP11,THOC5,TIMP3,TPST2,TTC28,UQCR10,XBP1,YWHAH,ZMAT5,ZNRF3"
TCGA.AG.3584	22	26445426	37357135	4130	-0.0208	NEUTRAL	NA	104	Too-Many
TCGA.AA.3831	22	26448642	51186227	8569	0.0135	NEUTRAL	NA	301	Too-Many
TCGA.AA.3850	22	26661499	27340345	364	0.30465	NEUTRAL	NA	8	"ASPHD2,CRYBA4,CRYBB1,HPS4,SEZ6L,SRRD,TFIP11,TPST2"
TCGA.AA.3982	22	26675658	27154014	232	0.3204	NEUTRAL	NA	8	"ASPHD2,CRYBA4,CRYBB1,HPS4,SEZ6L,SRRD,TFIP11,TPST2"
TCGA.AA.A00Q.01A	22	26688321	28378168	68	0.0655	NEUTRAL	NA	11	"ASPHD2,CRYBA4,CRYBB1,HPS4,MN1,PITPNB,SEZ6L,SRRD,TFIP11,TPST2,TTC28"
TCGA.AA.A00D.01A	22	26706598	29140554	81	0.3244	NEUTRAL	NA	13	"ASPHD2,CHEK2,CRYBA4,CRYBB1,HPS4,HSCB,MN1,PITPNB,SEZ6L,SRRD,TFIP11,TPST2,TTC28"
TCGA.AA.A00N.01A	22	26776170	26866656	12	0.1836	NEUTRAL	NA	3	"ASPHD2,HPS4,SEZ6L"
TCGA.CK.5914.01A	22	26776170	26866656	12	-0.0207	NEUTRAL	NA	3	"ASPHD2,HPS4,SEZ6L"
TCGA.AA.A01Q.01A	22	26776170	30218286	220	-0.0898	NEUTRAL	NA	33	"AP1B1,ASCC2,ASPHD2,C22orf31,CABP7,CCDC117,CHEK2,CRYBA4,CRYBB1,EMID1,EWSR1,GAS2L1,HPS4,HSCB,KREMEN1,MN1,NEFH,NF2,NIPSNAP1,PITPNB,RASL10A,RFPL1,RHBDD3,SEZ6L,SRRD,TFIP11,THOC5,TPST2,TTC28,UQCR10,XBP1,ZMAT5,ZNRF3"
TCGA.AG.4009.01A	22	26829573	29153050	79	-0.1818	NEUTRAL	NA	12	"ASPHD2,CHEK2,CRYBA4,CRYBB1,HPS4,HSCB,MN1,PITPNB,SRRD,TFIP11,TPST2,TTC28"
TCGA.AA.A010.01A	22	26853787	28310219	58	0.1642	NEUTRAL	NA	8	"CRYBA4,CRYBB1,HPS4,MN1,PITPNB,SRRD,TFIP11,TPST2"
TCGA.AG.3909.01A	22	26861373	26866656	4	-0.2328	NEUTRAL	NA	1	HPS4
TCGA.AA.A00N.01A	22	26887961	26995414	18	-0.3673	NEUTRAL	NA	3	"CRYBB1,TFIP11,TPST2"
TCGA.CK.5914.01A	22	26887961	28397320	51	-0.1611	NEUTRAL	NA	7	"CRYBA4,CRYBB1,MN1,PITPNB,TFIP11,TPST2,TTC28"
TCGA.AG.A00C.01A	22	26887961	29153050	59	0.0247	NEUTRAL	NA	9	"CHEK2,CRYBA4,CRYBB1,HSCB,MN1,PITPNB,TFIP11,TPST2,TTC28"
TCGA.AG.3909.01A	22	26892057	27003806	17	-0.1889	NEUTRAL	NA	3	"CRYBB1,TFIP11,TPST2"
TCGA.AD.6889	22	27058820	51186227	8270	-0.0987	NEUTRAL	NA	293	Too-Many
TCGA.AA.3517	22	27085490	51186227	8251	-0.3439	NEUTRAL	NA	293	Too-Many
TCGA.AA.3982	22	27161059	27172004	6	-0.3723	NEUTRAL	NA	0	None
TCGA.AA.3982	22	27172825	27735826	451	0.1536	NEUTRAL	NA	0	None
TCGA.AA.3850	22	27366971	33533718	2041	0.31225	NEUTRAL	NA	72	"AP1B1,ASCC2,BPIFC,C22orf24,C22orf31,C22orf42,CABP7,CCDC117,CCDC157,CHEK2,DEPDC5,DRG1,DUSP18,EIF4ENIF1,EMID1,EWSR1,FBXO7,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HSCB,INPP5J,KREMEN1,LIF,LIMK2,MN1,MORC2,MTFP1,MTMR3,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PITPNB,PLA2G3,PRR14L,RASL10A,RFPL1,RFPL2,RFPL3,RHBDD3,RNF185,RNF215,RTCB,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SFI1,SLC35E4,SLC5A1,SLC5A4,SMTN,SYN3,TBC1D10A,TCN2,THOC5,TIMP3,TTC28,UQCR10,XBP1,YWHAH,ZMAT5,ZNRF3"
TCGA.AZ.6599	22	27425421	51186227	8047	-0.1129	NEUTRAL	NA	293	Too-Many
TCGA.AA.3982	22	27736107	27767092	20	-0.2594	NEUTRAL	NA	0	None
TCGA.AA.3982	22	27770221	28261629	281	0.3182	NEUTRAL	NA	2	"MN1,PITPNB"
TCGA.DM.A28F	22	27779391	40103933	3946	0.3208	NEUTRAL	NA	165	Too-Many
TCGA.QG.A5Z1	22	27877297	32403317	1121	-0.0634	NEUTRAL	NA	62	"AP1B1,ASCC2,C22orf24,C22orf31,CABP7,CCDC117,CCDC157,CHEK2,DEPDC5,DRG1,DUSP18,EIF4ENIF1,EMID1,EWSR1,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HSCB,INPP5J,KREMEN1,LIF,LIMK2,MN1,MORC2,MTFP1,MTMR3,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PITPNB,PLA2G3,PRR14L,RASL10A,RFPL1,RHBDD3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SFI1,SLC35E4,SMTN,TBC1D10A,TCN2,THOC5,TTC28,UQCR10,XBP1,YWHAH,ZMAT5,ZNRF3"
TCGA.AD.6965	22	27914053	27981369	50	0.3213	NEUTRAL	NA	0	None
TCGA.AD.6965	22	27983421	28261629	132	-0.43	NEUTRAL	NA	2	"MN1,PITPNB"
TCGA.A6.6653	22	28154617	42299534	4041	-0.0222	NEUTRAL	NA	197	Too-Many
TCGA.AA.A00N.01A	22	28192789	28293738	11	-0.1361	NEUTRAL	NA	2	"MN1,PITPNB"
TCGA.AG.3909.01A	22	28192789	29169639	32	-0.2834	NEUTRAL	NA	6	"CCDC117,CHEK2,HSCB,MN1,PITPNB,TTC28"
TCGA.AA.3982	22	28279687	28430651	40	0.2574	NEUTRAL	NA	2	"PITPNB,TTC28"
TCGA.A6.3808.01A	22	28293020	32505990	637	-0.0631	NEUTRAL	NA	62	"AP1B1,ASCC2,C22orf24,C22orf31,CABP7,CCDC117,CCDC157,CHEK2,DEPDC5,DRG1,DUSP18,EIF4ENIF1,EMID1,EWSR1,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HSCB,INPP5J,KREMEN1,LIF,LIMK2,MORC2,MTFP1,MTMR3,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PITPNB,PLA2G3,PRR14L,RASL10A,RFPL1,RHBDD3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SFI1,SLC35E4,SLC5A1,SMTN,TBC1D10A,TCN2,THOC5,TTC28,UQCR10,XBP1,YWHAH,ZMAT5,ZNRF3"
TCGA.AA.A00L.01A	22	28315006	29091063	7	-0.0277	NEUTRAL	NA	3	"CHEK2,PITPNB,TTC28"
TCGA.AD.6965	22	28364147	40320757	3681	-0.4032	NEUTRAL	NA	165	Too-Many
TCGA.AA.A00N.01A	22	28388517	28397320	5	0.103	NEUTRAL	NA	1	TTC28
TCGA.AA.3982	22	28441470	28537991	17	0.0004	NEUTRAL	NA	1	TTC28
TCGA.AA.3982	22	28549291	33539771	1361	0.2948	NEUTRAL	NA	70	"AP1B1,ASCC2,BPIFC,C22orf24,C22orf31,C22orf42,CABP7,CCDC117,CCDC157,CHEK2,DEPDC5,DRG1,DUSP18,EIF4ENIF1,EMID1,EWSR1,FBXO7,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HSCB,INPP5J,KREMEN1,LIF,LIMK2,MORC2,MTFP1,MTMR3,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PLA2G3,PRR14L,RASL10A,RFPL1,RFPL2,RFPL3,RHBDD3,RNF185,RNF215,RTCB,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SFI1,SLC35E4,SLC5A1,SLC5A4,SMTN,SYN3,TBC1D10A,TCN2,THOC5,TIMP3,TTC28,UQCR10,XBP1,YWHAH,ZMAT5,ZNRF3"
TCGA.CK.5914.01A	22	28693526	29140554	18	-0.1434	NEUTRAL	NA	3	"CHEK2,HSCB,TTC28"
TCGA.CI.6619	22	28794068	51186227	7373	-0.1407	NEUTRAL	NA	291	Too-Many
TCGA.AA.3509.01A	22	29182060	30421577	198	-0.1388	NEUTRAL	NA	21	"AP1B1,ASCC2,C22orf31,CABP7,CCDC117,EMID1,EWSR1,GAS2L1,KREMEN1,MTMR3,NEFH,NF2,NIPSNAP1,RASL10A,RFPL1,RHBDD3,THOC5,UQCR10,XBP1,ZMAT5,ZNRF3"
TCGA.AG.3906.01A	22	29191111	29670163	41	0.0203	NEUTRAL	NA	7	"C22orf31,EMID1,EWSR1,KREMEN1,RHBDD3,XBP1,ZNRF3"
TCGA.AA.A00Q.01A	22	29191986	30921310	226	0.1182	NEUTRAL	NA	33	"AP1B1,ASCC2,C22orf31,CABP7,CCDC157,EMID1,EWSR1,GAS2L1,GATSL3,HORMAD2,KREMEN1,LIF,MTFP1,MTMR3,NEFH,NF2,NIPSNAP1,OSM,RASL10A,RFPL1,RHBDD3,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SF3A1,TBC1D10A,THOC5,UQCR10,XBP1,ZMAT5,ZNRF3"
TCGA.AG.4009.01A	22	29195897	29664265	35	-0.1226	NEUTRAL	NA	7	"C22orf31,EMID1,EWSR1,KREMEN1,RHBDD3,XBP1,ZNRF3"
TCGA.AG.A00C.01A	22	29383067	29935267	93	0.045	NEUTRAL	NA	12	"AP1B1,C22orf31,EMID1,EWSR1,GAS2L1,KREMEN1,NEFH,RASL10A,RFPL1,RHBDD3,THOC5,ZNRF3"
TCGA.A6.6649	22	29454476	51186227	7246	-0.1563	NEUTRAL	NA	285	Too-Many
TCGA.D5.6920	22	29475123	29642110	53	0.308	NEUTRAL	NA	2	"EMID1,KREMEN1"
TCGA.AG.3909.01A	22	29490195	29730206	48	-0.3673	NEUTRAL	NA	7	"AP1B1,EMID1,EWSR1,GAS2L1,KREMEN1,RASL10A,RHBDD3"
TCGA.AA.A00N.01A	22	29494797	29661419	25	0.3615	NEUTRAL	NA	3	"EMID1,KREMEN1,RHBDD3"
TCGA.AA.A00D.01A	22	29517348	29661419	15	0.1523	NEUTRAL	NA	3	"EMID1,KREMEN1,RHBDD3"
TCGA.CK.5914.01A	22	29536212	29738233	55	-0.2282	NEUTRAL	NA	7	"AP1B1,EMID1,EWSR1,GAS2L1,KREMEN1,RASL10A,RHBDD3"
TCGA.D5.6920	22	29642364	51186227	7176	-0.0409	NEUTRAL	NA	283	Too-Many
TCGA.AG.4009.01A	22	29668147	29709796	22	-0.4915	NEUTRAL	NA	3	"EWSR1,GAS2L1,RASL10A"
TCGA.AA.3819	22	29668198	51186227	7173	-0.007	NEUTRAL	NA	281	Too-Many
TCGA.AG.3906.01A	22	29673972	29932564	57	0.2879	NEUTRAL	NA	7	"AP1B1,EWSR1,GAS2L1,NEFH,RASL10A,RFPL1,THOC5"
TCGA.AA.A00N.01A	22	29710975	29837483	24	0.3447	NEUTRAL	NA	3	"AP1B1,RASL10A,RFPL1"
TCGA.AG.4009.01A	22	29725605	29734950	6	-0.1588	NEUTRAL	NA	1	AP1B1
TCGA.AA.A00D.01A	22	29726335	29837483	20	0.1173	NEUTRAL	NA	2	"AP1B1,RFPL1"
TCGA.AG.3909.01A	22	29734950	29965159	46	0.3211	NEUTRAL	NA	5	"AP1B1,NEFH,NIPSNAP1,RFPL1,THOC5"
TCGA.AG.4009.01A	22	29735657	29837483	15	0.2687	NEUTRAL	NA	2	"AP1B1,RFPL1"
TCGA.DT.5265	22	29755887	51186227	7155	-0.0131	NEUTRAL	NA	278	Too-Many
TCGA.CK.5914.01A	22	29876252	29904381	7	-0.1987	NEUTRAL	NA	2	"NEFH,THOC5"
TCGA.AG.4009.01A	22	29879326	30125007	49	-0.4155	NEUTRAL	NA	5	"CABP7,NEFH,NF2,NIPSNAP1,THOC5"
TCGA.CK.5914.01A	22	29935267	30125394	38	-0.4109	NEUTRAL	NA	4	"CABP7,NF2,NIPSNAP1,THOC5"
TCGA.AG.3891.01A	22	29965159	31662912	253	0.2311	NEUTRAL	NA	33	"ASCC2,CABP7,CCDC157,DUSP18,GAL3ST1,GATSL3,HORMAD2,INPP5J,LIF,LIMK2,MORC2,MTFP1,MTMR3,NF2,NIPSNAP1,OSBP2,OSM,PES1,PLA2G3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SLC35E4,SMTN,TBC1D10A,TCN2,UQCR10,ZMAT5"
TCGA.AG.A025.01A	22	29965159	51220568	2027	-0.2521	NEUTRAL	NA	275	Too-Many
TCGA.AA.A010.01A	22	29976020	30078975	17	-0.0615	NEUTRAL	NA	2	"NF2,NIPSNAP1"
TCGA.AG.3906.01A	22	30032692	30228183	43	0.2597	NEUTRAL	NA	5	"ASCC2,CABP7,NF2,UQCR10,ZMAT5"
TCGA.AG.3909.01A	22	30060926	30070778	5	0.2154	NEUTRAL	NA	1	NF2
TCGA.AG.A00C.01A	22	30067773	30722624	80	-0.049	NEUTRAL	NA	11	"ASCC2,CABP7,GATSL3,HORMAD2,LIF,MTMR3,NF2,OSM,TBC1D10A,UQCR10,ZMAT5"
TCGA.AG.3909.01A	22	30074134	30124572	6	-0.499	NEUTRAL	NA	2	"CABP7,NF2"
TCGA.AA.A00L.01A	22	30123603	32497971	280	0.3577	NEUTRAL	NA	42	"ASCC2,C22orf24,CABP7,CCDC157,DEPDC5,DRG1,DUSP18,EIF4ENIF1,GAL3ST1,GATSL3,HORMAD2,INPP5J,LIF,LIMK2,MORC2,MTFP1,MTMR3,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PLA2G3,PRR14L,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SFI1,SLC35E4,SLC5A1,SMTN,TBC1D10A,TCN2,UQCR10,YWHAH,ZMAT5"
TCGA.AG.3909.01A	22	30125007	30572010	55	0.2344	NEUTRAL	NA	6	"ASCC2,CABP7,HORMAD2,MTMR3,UQCR10,ZMAT5"
TCGA.AG.4009.01A	22	30125394	30419358	44	0.1091	NEUTRAL	NA	5	"ASCC2,CABP7,MTMR3,UQCR10,ZMAT5"
TCGA.CK.5914.01A	22	30127173	30602923	58	0.3379	NEUTRAL	NA	6	"ASCC2,CABP7,HORMAD2,MTMR3,UQCR10,ZMAT5"
TCGA.AM.5820	22	30135485	30221200	20	0.3446	NEUTRAL	NA	3	"ASCC2,UQCR10,ZMAT5"
TCGA.AA.A00D.01A	22	30136580	30200596	10	-0.1189	NEUTRAL	NA	3	"ASCC2,UQCR10,ZMAT5"
TCGA.AA.A010.01A	22	30202776	30722624	62	0.1235	NEUTRAL	NA	7	"ASCC2,GATSL3,HORMAD2,LIF,MTMR3,OSM,TBC1D10A"
TCGA.AA.A01Q.01A	22	30221024	30419358	21	0.3429	NEUTRAL	NA	2	"ASCC2,MTMR3"
TCGA.AM.5820	22	30229398	30580160	74	-0.2145	NEUTRAL	NA	3	"ASCC2,HORMAD2,MTMR3"
TCGA.CM.6679	22	30299752	31810228	343	-0.23485	NEUTRAL	NA	30	"CCDC157,DRG1,DUSP18,GAL3ST1,GATSL3,HORMAD2,INPP5J,LIF,LIMK2,MORC2,MTFP1,MTMR3,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PLA2G3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SLC35E4,SMTN,TBC1D10A,TCN2"
TCGA.AG.3731	22	30343845	30876834	140	0.1509	NEUTRAL	NA	12	"CCDC157,GATSL3,HORMAD2,LIF,MTFP1,MTMR3,OSM,RNF215,SEC14L2,SEC14L3,SF3A1,TBC1D10A"
TCGA.AG.3906.01A	22	30366954	30735101	50	-0.1142	NEUTRAL	NA	7	"GATSL3,HORMAD2,LIF,MTMR3,OSM,SF3A1,TBC1D10A"
TCGA.AG.A01W.01A	22	30402796	30540937	35	-0.4965	NEUTRAL	NA	2	"HORMAD2,MTMR3"
TCGA.AG.A00Y.01A	22	30403072	31674255	196	0.0598	NEUTRAL	NA	27	"CCDC157,DUSP18,GAL3ST1,GATSL3,HORMAD2,INPP5J,LIF,LIMK2,MORC2,MTFP1,MTMR3,OSBP2,OSM,PES1,PLA2G3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SLC35E4,SMTN,TBC1D10A,TCN2"
TCGA.AA.A00D.01A	22	30408365	30419358	8	-0.0679	NEUTRAL	NA	1	MTMR3
TCGA.AG.4009.01A	22	30421577	30806535	55	-0.3451	NEUTRAL	NA	10	"CCDC157,GATSL3,HORMAD2,LIF,MTMR3,OSM,RNF215,SEC14L2,SF3A1,TBC1D10A"
TCGA.AA.A01Q.01A	22	30421577	30824402	57	-0.4775	NEUTRAL	NA	11	"CCDC157,GATSL3,HORMAD2,LIF,MTFP1,MTMR3,OSM,RNF215,SEC14L2,SF3A1,TBC1D10A"
TCGA.AA.3509.01A	22	30499358	32072757	313	-0.0803	NEUTRAL	NA	32	"CCDC157,DRG1,DUSP18,EIF4ENIF1,GAL3ST1,GATSL3,HORMAD2,INPP5J,LIF,LIMK2,MORC2,MTFP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PLA2G3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SFI1,SLC35E4,SMTN,TBC1D10A,TCN2"
TCGA.AG.A01W.01A	22	30544957	35008614	242	-0.128	NEUTRAL	NA	47	"BPIFC,C22orf24,C22orf42,CCDC157,DEPDC5,DRG1,DUSP18,EIF4ENIF1,FBXO7,GAL3ST1,GATSL3,HORMAD2,INPP5J,LARGE,LIF,LIMK2,MORC2,MTFP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PLA2G3,PRR14L,RFPL2,RFPL3,RNF185,RNF215,RTCB,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SFI1,SLC35E4,SLC5A1,SLC5A4,SMTN,SYN3,TBC1D10A,TCN2,TIMP3,YWHAH"
TCGA.AM.5820	22	30592068	31071353	137	0.2995	NEUTRAL	NA	17	"CCDC157,DUSP18,GAL3ST1,GATSL3,LIF,MTFP1,OSM,PES1,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SF3A1,SLC35E4,TBC1D10A,TCN2"
TCGA.CK.5914.01A	22	30639618	30845067	69	-0.4928	NEUTRAL	NA	9	"CCDC157,GATSL3,LIF,MTFP1,OSM,RNF215,SEC14L2,SF3A1,TBC1D10A"
TCGA.AA.A010.01A	22	30730543	30752660	15	-0.4021	NEUTRAL	NA	2	"CCDC157,SF3A1"
TCGA.AG.A00C.01A	22	30730543	30824402	35	0.3658	NEUTRAL	NA	5	"CCDC157,MTFP1,RNF215,SEC14L2,SF3A1"
TCGA.AG.3906.01A	22	30736163	30772241	14	0.269	NEUTRAL	NA	2	"CCDC157,SF3A1"
TCGA.AG.3906.01A	22	30805051	30950932	32	0.1186	NEUTRAL	NA	6	"GAL3ST1,MTFP1,SEC14L2,SEC14L3,SEC14L4,SEC14L6"
TCGA.AG.4009.01A	22	30811697	30921569	25	0.2759	NEUTRAL	NA	5	"MTFP1,SEC14L2,SEC14L3,SEC14L4,SEC14L6"
TCGA.G4.6298	22	30820549	46856805	5012	-0.4838	NEUTRAL	NA	220	Too-Many
TCGA.AA.A00D.01A	22	30823053	30975087	27	0.1437	NEUTRAL	NA	6	"GAL3ST1,MTFP1,PES1,SEC14L3,SEC14L4,SEC14L6"
TCGA.AG.A00C.01A	22	30855961	30934764	21	-0.2283	NEUTRAL	NA	3	"SEC14L3,SEC14L4,SEC14L6"
TCGA.AA.A01Q.01A	22	30855961	31059374	50	-0.1844	NEUTRAL	NA	8	"DUSP18,GAL3ST1,PES1,SEC14L3,SEC14L4,SEC14L6,SLC35E4,TCN2"
TCGA.AG.3731	22	30885979	41676175	3320	-0.1554	NEUTRAL	NA	145	Too-Many
TCGA.AA.A01I.01A	22	30899618	51220568	1759	-0.3044	NEUTRAL	NA	257	Too-Many
TCGA.CK.5914.01A	22	30929908	31328346	50	-0.3086	NEUTRAL	NA	8	"DUSP18,GAL3ST1,MORC2,OSBP2,PES1,SEC14L6,SLC35E4,TCN2"
TCGA.AG.3909.01A	22	30934764	31302137	36	-0.2256	NEUTRAL	NA	7	"DUSP18,GAL3ST1,OSBP2,PES1,SEC14L6,SLC35E4,TCN2"
TCGA.AG.A00C.01A	22	30950932	31090850	24	0.1921	NEUTRAL	NA	6	"DUSP18,GAL3ST1,OSBP2,PES1,SLC35E4,TCN2"
TCGA.AA.A00Q.01A	22	30950932	36649925	333	0.1347	NEUTRAL	NA	48	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C22orf24,C22orf42,DEPDC5,DRG1,DUSP18,EIF4ENIF1,FBXO7,GAL3ST1,HMGXB4,HMOX1,INPP5J,ISX,LARGE,LIMK2,MB,MCM5,MORC2,OSBP2,PATZ1,PES1,PIK3IP1,PISD,PLA2G3,PRR14L,RASD2,RBFOX2,RFPL2,RFPL3,RNF185,RTCB,SELM,SFI1,SLC35E4,SLC5A1,SLC5A4,SMTN,SYN3,TCN2,TIMP3,TOM1,YWHAH"
TCGA.CA.5256	22	30975512	51186227	6820	-0.0297	NEUTRAL	NA	253	Too-Many
TCGA.AA.A02J.01A	22	30975720	51014421	1483	-0.0844	NEUTRAL	NA	248	Too-Many
TCGA.AF.3914.01A	22	30976947	31661935	95	-0.1538	NEUTRAL	NA	12	"DUSP18,INPP5J,LIMK2,MORC2,OSBP2,PES1,PLA2G3,RNF185,SELM,SLC35E4,SMTN,TCN2"
TCGA.AG.3906.01A	22	30980329	31137097	17	0.311	NEUTRAL	NA	5	"DUSP18,OSBP2,PES1,SLC35E4,TCN2"
TCGA.AA.A010.01A	22	30987699	31061433	15	-0.3782	NEUTRAL	NA	4	"DUSP18,PES1,SLC35E4,TCN2"
TCGA.AA.A00D.01A	22	30987699	31535800	46	0.1266	NEUTRAL	NA	10	"DUSP18,INPP5J,MORC2,OSBP2,PES1,PLA2G3,SELM,SLC35E4,SMTN,TCN2"
TCGA.AG.4009.01A	22	31003264	31342281	38	-0.0333	NEUTRAL	NA	5	"DUSP18,MORC2,OSBP2,SLC35E4,TCN2"
TCGA.AM.5820	22	31078340	31474553	89	0.0662	NEUTRAL	NA	2	"MORC2,OSBP2"
TCGA.AA.A01Q.01A	22	31090850	31346301	20	0.2603	NEUTRAL	NA	2	"MORC2,OSBP2"
TCGA.AG.A00C.01A	22	31137097	31285439	6	-0.4582	NEUTRAL	NA	1	OSBP2
TCGA.AG.3906.01A	22	31266399	31535800	60	-0.079	NEUTRAL	NA	6	"INPP5J,MORC2,OSBP2,PLA2G3,SELM,SMTN"
TCGA.AG.A00C.01A	22	31286698	31501562	37	0.0792	NEUTRAL	NA	4	"MORC2,OSBP2,SELM,SMTN"
TCGA.DM.A1D0	22	31295081	38463140	2599	-0.0055	NEUTRAL	NA	83	"ANKRD54,APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C1QTNF6,C22orf23,C22orf24,C22orf42,CACNG2,CARD10,CDC42EP1,CSF2RB,CYTH4,DEPDC5,DRG1,EIF3D,EIF3L,EIF4ENIF1,ELFN2,FBXO7,FOXRED2,GALR3,GCAT,GGA1,H1F0,HMGXB4,HMOX1,IFT27,IL2RB,INPP5J,ISX,KCTD17,LARGE,LGALS1,LGALS2,LIMK2,MB,MCM5,MFNG,MICALL1,MORC2,MPST,MYH9,NCF4,NOL12,OSBP2,PATZ1,PDXP,PICK1,PIK3IP1,PISD,PLA2G3,POLR2F,PRR14L,PVALB,RAC2,RASD2,RBFOX2,RFPL2,RFPL3,RNF185,RTCB,SELM,SFI1,SH3BP1,SLC5A1,SLC5A4,SMTN,SOX10,SSTR3,SYN3,TEX33,TIMP3,TMPRSS6,TOM1,TRIOBP,TST,TXN2,YWHAH"
TCGA.AG.3909.01A	22	31322728	31337370	13	0.3162	NEUTRAL	NA	1	MORC2
TCGA.AA.A010.01A	22	31328346	31337871	12	-0.4274	NEUTRAL	NA	1	MORC2
TCGA.AG.3611.01A	22	31332879	31478856	11	-0.4699	NEUTRAL	NA	2	"MORC2,SMTN"
TCGA.AG.3909.01A	22	31337871	31345696	3	-0.1343	NEUTRAL	NA	1	MORC2
TCGA.CK.5914.01A	22	31337871	31823005	90	-0.3384	NEUTRAL	NA	10	"DRG1,INPP5J,LIMK2,MORC2,PATZ1,PIK3IP1,PLA2G3,RNF185,SELM,SMTN"
TCGA.AG.3611.01A	22	31483907	38823142	624	-0.1068	NEUTRAL	NA	89	"ANKRD54,APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BAIAP2L2,BPIFC,C1QTNF6,C22orf23,C22orf24,C22orf42,CACNG2,CARD10,CDC42EP1,CSF2RB,CSNK1E,CYTH4,DEPDC5,DRG1,EIF3D,EIF3L,EIF4ENIF1,ELFN2,FBXO7,FOXRED2,GALR3,GCAT,GGA1,H1F0,HMGXB4,HMOX1,IFT27,IL2RB,INPP5J,ISX,KCNJ4,KCTD17,LARGE,LGALS1,LGALS2,LIMK2,LOC400927-CSNK1E,MAFF,MB,MCM5,MFNG,MICALL1,MPST,MYH9,NCF4,NOL12,PATZ1,PDXP,PICK1,PIK3IP1,PISD,PLA2G3,PLA2G6,POLR2F,PRR14L,PVALB,RAC2,RASD2,RBFOX2,RFPL2,RFPL3,RNF185,RTCB,SELM,SFI1,SH3BP1,SLC16A8,SLC5A1,SLC5A4,SMTN,SOX10,SSTR3,SYN3,TEX33,TIMP3,TMEM184B,TMPRSS6,TOM1,TRIOBP,TST,TXN2,YWHAH"
TCGA.AG.4009.01A	22	31494616	31520780	8	-0.0916	NEUTRAL	NA	3	"INPP5J,SELM,SMTN"
TCGA.AA.A01Q.01A	22	31494616	31661935	29	0.0087	NEUTRAL	NA	6	"INPP5J,LIMK2,PLA2G3,RNF185,SELM,SMTN"
TCGA.AG.A00C.01A	22	31501837	31535800	17	-0.2157	NEUTRAL	NA	3	"INPP5J,PLA2G3,SELM"
TCGA.AA.A00N.01A	22	31503316	31661935	36	-0.1106	NEUTRAL	NA	5	"INPP5J,LIMK2,PLA2G3,RNF185,SELM"
TCGA.AG.4009.01A	22	31522343	31535800	15	0.197	NEUTRAL	NA	2	"INPP5J,PLA2G3"
TCGA.AM.5820	22	31547183	32005593	78	0.0094	NEUTRAL	NA	7	"DRG1,EIF4ENIF1,LIMK2,PATZ1,PIK3IP1,RNF185,SFI1"
TCGA.AA.A010.01A	22	31583033	31644632	10	-0.1887	NEUTRAL	NA	2	"LIMK2,RNF185"
TCGA.AG.A00C.01A	22	31583033	32891401	226	0.0467	NEUTRAL	NA	20	"BPIFC,C22orf24,C22orf42,DEPDC5,DRG1,EIF4ENIF1,FBXO7,LIMK2,PATZ1,PIK3IP1,PISD,PRR14L,RFPL2,RFPL3,RNF185,RTCB,SFI1,SLC5A1,SLC5A4,YWHAH"
TCGA.AG.4009.01A	22	31608301	31658559	8	-0.1124	NEUTRAL	NA	1	LIMK2
TCGA.AG.3909.01A	22	31608301	31974307	66	0.1955	NEUTRAL	NA	6	"DRG1,EIF4ENIF1,LIMK2,PATZ1,PIK3IP1,SFI1"
TCGA.AA.A01Q.01A	22	31662912	31741081	20	-0.3336	NEUTRAL	NA	3	"LIMK2,PATZ1,PIK3IP1"
TCGA.AF.3914.01A	22	31688194	38106394	546	-0.128	NEUTRAL	NA	65	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C1QTNF6,C22orf24,C22orf42,CACNG2,CARD10,CDC42EP1,CSF2RB,CYTH4,DEPDC5,DRG1,EIF3D,EIF4ENIF1,ELFN2,FBXO7,FOXRED2,GGA1,HMGXB4,HMOX1,IFT27,IL2RB,ISX,KCTD17,LARGE,LGALS1,LGALS2,MB,MCM5,MFNG,MPST,MYH9,NCF4,NOL12,PATZ1,PDXP,PIK3IP1,PISD,PRR14L,PVALB,RAC2,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SFI1,SH3BP1,SLC5A1,SLC5A4,SSTR3,SYN3,TEX33,TIMP3,TMPRSS6,TOM1,TRIOBP,TST,TXN2,YWHAH"
TCGA.AA.A01Q.01A	22	31795604	32012689	32	0.322	NEUTRAL	NA	3	"DRG1,EIF4ENIF1,SFI1"
TCGA.AG.4009.01A	22	31795604	32302179	107	-0.0218	NEUTRAL	NA	6	"DEPDC5,DRG1,EIF4ENIF1,PISD,PRR14L,SFI1"
TCGA.AG.3906.01A	22	31816205	31976233	34	0.1994	NEUTRAL	NA	3	"DRG1,EIF4ENIF1,SFI1"
TCGA.AA.A00N.01A	22	31819219	31864109	21	0.3158	NEUTRAL	NA	2	"DRG1,EIF4ENIF1"
TCGA.CM.6679	22	31830350	36648551	1971	0.14835	NEUTRAL	NA	31	"APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C22orf24,C22orf42,DEPDC5,EIF4ENIF1,FBXO7,HMGXB4,HMOX1,ISX,LARGE,MB,MCM5,PISD,PRR14L,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SFI1,SLC5A1,SLC5A4,SYN3,TIMP3,TOM1,YWHAH"
TCGA.AA.A010.01A	22	31842882	31854413	9	0.0684	NEUTRAL	NA	1	EIF4ENIF1
TCGA.CK.5914.01A	22	31867800	32174023	59	-0.2757	NEUTRAL	NA	5	"DEPDC5,EIF4ENIF1,PISD,PRR14L,SFI1"
TCGA.AG.3906.01A	22	31998561	32072757	20	-0.0315	NEUTRAL	NA	2	"PISD,SFI1"
TCGA.AA.A00N.01A	22	31998561	32112057	32	0.1545	NEUTRAL	NA	3	"PISD,PRR14L,SFI1"
TCGA.AA.A02E.01A	22	32002277	32188666	28	-0.3483	NEUTRAL	NA	4	"DEPDC5,PISD,PRR14L,SFI1"
TCGA.AG.3891.01A	22	32007087	37888395	429	0.1586	NEUTRAL	NA	53	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C1QTNF6,C22orf24,C22orf42,CACNG2,CARD10,CSF2RB,CYTH4,DEPDC5,EIF3D,ELFN2,FBXO7,FOXRED2,HMGXB4,HMOX1,IFT27,IL2RB,ISX,KCTD17,LARGE,MB,MCM5,MFNG,MPST,MYH9,NCF4,PISD,PRR14L,PVALB,RAC2,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SFI1,SLC5A1,SLC5A4,SSTR3,SYN3,TEX33,TIMP3,TMPRSS6,TOM1,TST,TXN2,YWHAH"
TCGA.AA.A01Q.01A	22	32015560	32019619	6	-0.4978	NEUTRAL	NA	1	PISD
TCGA.AG.3909.01A	22	32019619	32108071	10	0.3176	NEUTRAL	NA	2	"PISD,PRR14L"
TCGA.AA.A01Q.01A	22	32021684	36650912	209	0.1685	NEUTRAL	NA	30	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C22orf24,C22orf42,DEPDC5,FBXO7,HMGXB4,HMOX1,ISX,LARGE,MB,MCM5,PISD,PRR14L,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SLC5A1,SLC5A4,SYN3,TIMP3,TOM1,YWHAH"
TCGA.AM.5820	22	32034474	32275941	56	-0.1349	NEUTRAL	NA	2	"DEPDC5,PRR14L"
TCGA.AA.A02K.01A	22	32072796	51220569	2040	-0.3613	NEUTRAL	NA	236	Too-Many
TCGA.AA.3844	22	32111441	34354272	995	0.072	NEUTRAL	NA	15	"BPIFC,C22orf24,C22orf42,DEPDC5,FBXO7,LARGE,PRR14L,RFPL2,RFPL3,RTCB,SLC5A1,SLC5A4,SYN3,TIMP3,YWHAH"
TCGA.AA.A00A.01A	22	32112057	32240963	5	-0.2047	NEUTRAL	NA	2	"DEPDC5,PRR14L"
TCGA.AG.3909.01A	22	32134323	32164763	7	-0.5078	NEUTRAL	NA	2	"DEPDC5,PRR14L"
TCGA.AA.A00N.01A	22	32164763	32188666	6	-0.2411	NEUTRAL	NA	1	DEPDC5
TCGA.AA.A02E.01A	22	32193538	36684824	234	0.166	NEUTRAL	NA	29	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C22orf24,C22orf42,DEPDC5,FBXO7,HMGXB4,HMOX1,ISX,LARGE,MB,MCM5,MYH9,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SLC5A1,SLC5A4,SYN3,TIMP3,TOM1,YWHAH"
TCGA.AG.3906.01A	22	32200764	37902150	397	0.0124	NEUTRAL	NA	50	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C1QTNF6,C22orf24,C22orf42,CACNG2,CARD10,CSF2RB,CYTH4,DEPDC5,EIF3D,ELFN2,FBXO7,FOXRED2,HMGXB4,HMOX1,IFT27,IL2RB,ISX,KCTD17,LARGE,MB,MCM5,MFNG,MPST,MYH9,NCF4,PVALB,RAC2,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SLC5A1,SLC5A4,SSTR3,SYN3,TEX33,TIMP3,TMPRSS6,TOM1,TST,TXN2,YWHAH"
TCGA.AA.3509.01A	22	32210927	50547079	1915	-0.1537	NEUTRAL	NA	208	Too-Many
TCGA.AM.5820	22	32287787	32607115	76	0.1867	NEUTRAL	NA	6	"C22orf24,C22orf42,DEPDC5,RFPL2,SLC5A1,YWHAH"
TCGA.AG.3909.01A	22	32297657	32352089	7	-0.291	NEUTRAL	NA	3	"C22orf24,DEPDC5,YWHAH"
TCGA.AG.4009.01A	22	32439242	32505990	15	0.1324	NEUTRAL	NA	1	SLC5A1
TCGA.AG.3909.01A	22	32495142	32554923	12	-0.0581	NEUTRAL	NA	2	"C22orf42,SLC5A1"
TCGA.AA.A00N.01A	22	32497971	32621595	19	-0.2279	NEUTRAL	NA	4	"C22orf42,RFPL2,SLC5A1,SLC5A4"
TCGA.AG.4009.01A	22	32545510	32588838	10	-0.4251	NEUTRAL	NA	2	"C22orf42,RFPL2"
TCGA.AG.3909.01A	22	32586776	32621595	8	-0.4388	NEUTRAL	NA	2	"RFPL2,SLC5A4"
TCGA.CK.5914.01A	22	32586776	32651155	19	0.0196	NEUTRAL	NA	2	"RFPL2,SLC5A4"
TCGA.A6.3808.01A	22	32586776	37876715	375	0.245	NEUTRAL	NA	44	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C1QTNF6,CACNG2,CSF2RB,CYTH4,EIF3D,ELFN2,FBXO7,FOXRED2,HMGXB4,HMOX1,IFT27,IL2RB,ISX,KCTD17,LARGE,MB,MCM5,MFNG,MPST,MYH9,NCF4,PVALB,RAC2,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SLC5A4,SSTR3,SYN3,TEX33,TIMP3,TMPRSS6,TOM1,TST,TXN2"
TCGA.AA.3862.01A	22	32586776	42024084	1060	-0.3246	NEUTRAL	NA	128	Too-Many
TCGA.AA.3861.01A	22	32586776	43558758	1265	-0.2136	NEUTRAL	NA	157	Too-Many
TCGA.AG.4009.01A	22	32590311	35481397	89	0.0984	NEUTRAL	NA	10	"BPIFC,FBXO7,ISX,LARGE,RFPL2,RFPL3,RTCB,SLC5A4,SYN3,TIMP3"
TCGA.AM.5820	22	32611861	32664240	24	-0.2484	NEUTRAL	NA	1	SLC5A4
TCGA.AG.3909.01A	22	32625129	32651155	11	0.3002	NEUTRAL	NA	1	SLC5A4
TCGA.AA.A00N.01A	22	32644673	32651155	4	0.35	NEUTRAL	NA	1	SLC5A4
TCGA.AM.5820	22	32664611	32759024	39	0.3081	NEUTRAL	NA	1	RFPL3
TCGA.AG.3909.01A	22	32754029	32815283	18	-0.4437	NEUTRAL	NA	3	"BPIFC,RFPL3,RTCB"
TCGA.A6.5657	22	32758416	51186227	6442	-0.3123	NEUTRAL	NA	226	Too-Many
TCGA.AM.5820	22	32762901	37394730	2022	0.0464	NEUTRAL	NA	30	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,CACNG2,CSF2RB,EIF3D,FBXO7,FOXRED2,HMGXB4,HMOX1,IFT27,ISX,LARGE,MB,MCM5,MYH9,NCF4,PVALB,RASD2,RBFOX2,RTCB,SYN3,TEX33,TIMP3,TOM1,TXN2"
TCGA.AA.A00N.01A	22	32783951	32871269	29	0.1057	NEUTRAL	NA	3	"BPIFC,FBXO7,RTCB"
TCGA.AG.3909.01A	22	32827270	32871269	12	0.0582	NEUTRAL	NA	2	"BPIFC,FBXO7"
TCGA.CK.5914.01A	22	32827270	32887024	18	-0.0734	NEUTRAL	NA	2	"BPIFC,FBXO7"
TCGA.AG.A00C.01A	22	32894161	35481397	35	-0.3653	NEUTRAL	NA	5	"FBXO7,ISX,LARGE,SYN3,TIMP3"
TCGA.AA.A00D.01A	22	32924812	35481397	32	0.0402	NEUTRAL	NA	4	"ISX,LARGE,SYN3,TIMP3"
TCGA.AA.3811	22	33538507	35451233	959	-0.1368	NEUTRAL	NA	1	LARGE
TCGA.AA.3850	22	33541670	34353432	415	0.27275	NEUTRAL	NA	1	LARGE
TCGA.AA.3982	22	33553728	34353432	414	0.2276	NEUTRAL	NA	1	LARGE
TCGA.DM.A1D7	22	33610563	34934468	674	-0.0762	NEUTRAL	NA	1	LARGE
TCGA.AA.3715	22	33733994	33880289	71	-0.249	NEUTRAL	NA	1	LARGE
TCGA.AA.3549	22	33820255	35667485	942	0.0377	NEUTRAL	NA	3	"HMGXB4,ISX,LARGE"
TCGA.AA.3715	22	33884395	51186227	5891	0.1187	NEUTRAL	NA	221	Too-Many
TCGA.AZ.4308	22	33961891	50704660	5779	-0.0588	NEUTRAL	NA	202	Too-Many
TCGA.AD.6548	22	34151948	51186227	5730	-0.0493	NEUTRAL	NA	221	Too-Many
TCGA.F4.6459	22	34208569	34290256	64	-0.3848	NEUTRAL	NA	1	LARGE
TCGA.F4.6459	22	34300774	51186227	5656	-0.0829	NEUTRAL	NA	221	Too-Many
TCGA.AA.3530	22	34329325	34423168	47	-0.0406	NEUTRAL	NA	0	None
TCGA.AA.3850	22	34354272	34761572	182	-0.06075	NEUTRAL	NA	0	None
TCGA.AA.3982	22	34354272	34896967	263	-0.0025	NEUTRAL	NA	0	None
TCGA.AA.3941	22	34354272	35398838	517	-0.0614	NEUTRAL	NA	0	None
TCGA.AA.3495	22	34354272	48074706	4284	0.0053	NEUTRAL	NA	184	Too-Many
TCGA.AA.3844	22	34396794	35334365	461	-0.1896	NEUTRAL	NA	0	None
TCGA.AA.3530	22	34435814	35408366	479	-0.0055	NEUTRAL	NA	0	None
TCGA.CA.5796	22	34512122	49821968	5239	0.0792	NEUTRAL	NA	185	Too-Many
TCGA.CA.5797	22	34633903	35287517	308	-0.3613	NEUTRAL	NA	0	None
TCGA.AA.3850	22	34768851	35390394	329	-0.11675	NEUTRAL	NA	0	None
TCGA.AA.3982	22	34899609	34906972	6	-0.2705	NEUTRAL	NA	0	None
TCGA.AA.3982	22	34910846	35328228	190	0.0445	NEUTRAL	NA	0	None
TCGA.DM.A1D7	22	34940941	35096658	66	0.2826	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	22	35032360	35202685	17	0.0696	NEUTRAL	NA	0	None
TCGA.DM.A1D7	22	35104935	36252266	459	-0.0701	NEUTRAL	NA	10	"APOL5,APOL6,HMGXB4,HMOX1,ISX,MB,MCM5,RASD2,RBFOX2,TOM1"
TCGA.AG.A01W.01A	22	35206540	35810662	83	-0.2538	NEUTRAL	NA	5	"HMGXB4,HMOX1,ISX,MCM5,TOM1"
TCGA.AA.3982	22	35330151	51186227	5158	0.3263	NEUTRAL	NA	220	Too-Many
TCGA.AA.3844	22	35337731	37722300	848	0.1948	NEUTRAL	NA	33	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,C1QTNF6,CACNG2,CSF2RB,CYTH4,EIF3D,FOXRED2,HMGXB4,HMOX1,IFT27,IL2RB,ISX,KCTD17,MB,MCM5,MPST,MYH9,NCF4,PVALB,RAC2,RASD2,RBFOX2,SSTR3,TEX33,TMPRSS6,TOM1,TST,TXN2"
TCGA.AA.3530	22	35410465	51186227	5095	0.2686	NEUTRAL	NA	220	Too-Many
TCGA.AA.3811	22	35454463	51186227	5081	0.162	NEUTRAL	NA	220	Too-Many
TCGA.CK.5914.01A	22	35658300	35947503	47	-0.3004	NEUTRAL	NA	5	"HMGXB4,HMOX1,MCM5,RASD2,TOM1"
TCGA.AG.A00C.01A	22	35658300	51220568	1547	0.0961	NEUTRAL	NA	220	Too-Many
TCGA.AG.4009.01A	22	35679894	36661158	76	0.1407	NEUTRAL	NA	13	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,HMGXB4,HMOX1,MB,MCM5,RASD2,RBFOX2,TOM1"
TCGA.AA.A00D.01A	22	35684179	36872738	112	0.2777	NEUTRAL	NA	15	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,HMGXB4,HMOX1,MB,MCM5,MYH9,RASD2,RBFOX2,TOM1,TXN2"
TCGA.AG.3909.01A	22	35728893	35947503	25	-0.2385	NEUTRAL	NA	4	"HMOX1,MCM5,RASD2,TOM1"
TCGA.AG.A00Y.01A	22	35802494	38369491	320	-0.0548	NEUTRAL	NA	49	"ANKRD54,APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,C1QTNF6,C22orf23,CACNG2,CARD10,CDC42EP1,CSF2RB,CYTH4,EIF3D,EIF3L,ELFN2,FOXRED2,GALR3,GCAT,GGA1,H1F0,IFT27,IL2RB,KCTD17,LGALS1,LGALS2,MB,MCM5,MFNG,MICALL1,MPST,MYH9,NCF4,NOL12,PDXP,POLR2F,PVALB,RAC2,RASD2,RBFOX2,SH3BP1,SOX10,SSTR3,TEX33,TMPRSS6,TRIOBP,TST,TXN2"
TCGA.AG.A01W.01A	22	35854546	36037960	31	-0.2223	NEUTRAL	NA	2	"MB,RASD2"
TCGA.AG.A01W.01A	22	36195880	36436353	70	-0.3564	NEUTRAL	NA	1	RBFOX2
TCGA.DM.A1D7	22	36259559	39661086	907	-0.4406	NEUTRAL	NA	75	"ANKRD54,APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,APOL1,APOL2,APOL3,APOL4,BAIAP2L2,C1QTNF6,C22orf23,CACNG2,CARD10,CBX6,CBX7,CBY1,CDC42EP1,CSF2RB,CSNK1E,CYTH4,DDX17,DMC1,DNAL4,EIF3D,EIF3L,ELFN2,FAM227A,FOXRED2,GALR3,GCAT,GGA1,GTPBP1,H1F0,IFT27,IL2RB,JOSD1,KCNJ4,KCTD17,KDELR3,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MFNG,MICALL1,MPST,MYH9,NCF4,NOL12,NPTXR,PDGFB,PDXP,PICK1,PLA2G6,POLR2F,PVALB,RAC2,RBFOX2,SH3BP1,SLC16A8,SOX10,SSTR3,SUN2,TEX33,TMEM184B,TMPRSS6,TOMM22,TRIOBP,TST,TXN2"
TCGA.AG.A01W.01A	22	36439124	36466799	8	-0.0945	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	22	36477658	36577234	29	0.1664	NEUTRAL	NA	1	APOL3
TCGA.QG.A5Z1	22	36526961	38144234	561	-0.0321	NEUTRAL	NA	34	"APOL1,APOL2,APOL3,APOL4,C1QTNF6,CACNG2,CARD10,CDC42EP1,CSF2RB,CYTH4,EIF3D,ELFN2,FOXRED2,GGA1,IFT27,IL2RB,KCTD17,LGALS1,LGALS2,MFNG,MPST,MYH9,NCF4,NOL12,PDXP,PVALB,RAC2,SH3BP1,SSTR3,TEX33,TMPRSS6,TRIOBP,TST,TXN2"
TCGA.AG.A01W.01A	22	36581467	36703779	35	-0.466	NEUTRAL	NA	4	"APOL1,APOL2,APOL4,MYH9"
TCGA.G4.6294	22	36596651	51186227	4731	-0.0982	NEUTRAL	NA	209	Too-Many
TCGA.AG.3909.01A	22	36649925	36653074	3	-0.0161	NEUTRAL	NA	1	APOL1
TCGA.AA.A00Q.01A	22	36650912	36661158	4	-0.1371	NEUTRAL	NA	1	APOL1
TCGA.CM.6679	22	36657328	51186227	4702	-0.27525	NEUTRAL	NA	207	Too-Many
TCGA.AA.A00N.01A	22	36657593	36893987	48	-0.2933	NEUTRAL	NA	4	"APOL1,FOXRED2,MYH9,TXN2"
TCGA.AA.A00L.01A	22	36678685	36697533	18	-0.274	NEUTRAL	NA	1	MYH9
TCGA.AG.4009.01A	22	36678685	36699989	20	-0.3432	NEUTRAL	NA	1	MYH9
TCGA.AA.A00A.01A	22	36680101	36702478	22	-0.1631	NEUTRAL	NA	1	MYH9
TCGA.AA.A02E.01A	22	36687982	51220568	1283	-0.2764	NEUTRAL	NA	207	Too-Many
TCGA.AA.A00Q.01A	22	36689336	40718849	514	0.0276	NEUTRAL	NA	82	"ANKRD54,APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,BAIAP2L2,C1QTNF6,C22orf23,CACNA1I,CACNG2,CARD10,CBX6,CBX7,CBY1,CDC42EP1,CSF2RB,CSNK1E,CYTH4,DDX17,DMC1,DNAL4,EIF3D,EIF3L,ELFN2,ENTHD1,FAM227A,FAM83F,FOXRED2,GALR3,GCAT,GGA1,GRAP2,GTPBP1,H1F0,IFT27,IL2RB,JOSD1,KCNJ4,KCTD17,KDELR3,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MFNG,MGAT3,MICALL1,MIEF1,MPST,MYH9,NCF4,NOL12,NPTXR,PDGFB,PDXP,PICK1,PLA2G6,POLR2F,PVALB,RAC2,RPL3,RPS19BP1,SH3BP1,SLC16A8,SOX10,SSTR3,SUN2,SYNGR1,TAB1,TEX33,TMEM184B,TMPRSS6,TNRC6B,TOMM22,TRIOBP,TST,TXN2"
TCGA.AG.4009.01A	22	36701017	36893987	25	0.1662	NEUTRAL	NA	3	"FOXRED2,MYH9,TXN2"
TCGA.EI.7004	22	36702148	37722300	387	0.0192	NEUTRAL	NA	19	"C1QTNF6,CACNG2,CSF2RB,CYTH4,EIF3D,FOXRED2,IFT27,IL2RB,KCTD17,MPST,MYH9,NCF4,PVALB,RAC2,SSTR3,TEX33,TMPRSS6,TST,TXN2"
TCGA.CA.5797	22	36707660	49604865	4224	0.1349	NEUTRAL	NA	171	Too-Many
TCGA.AG.A01W.01A	22	36709284	37231886	75	0.1979	NEUTRAL	NA	7	"CACNG2,EIF3D,FOXRED2,IFT27,MYH9,PVALB,TXN2"
TCGA.CI.6621	22	36766002	51186227	4663	-0.348	NEUTRAL	NA	206	Too-Many
TCGA.AG.4009.01A	22	36897261	36915400	10	-0.4549	NEUTRAL	NA	2	"EIF3D,FOXRED2"
TCGA.AG.A01J.01A	22	36914820	51220568	1241	-0.22	NEUTRAL	NA	204	Too-Many
TCGA.A6.2678	22	36915346	37008927	49	0.2956	NEUTRAL	NA	2	"CACNG2,EIF3D"
TCGA.AG.4009.01A	22	36916584	37395854	41	0.1107	NEUTRAL	NA	7	"CACNG2,CSF2RB,EIF3D,IFT27,NCF4,PVALB,TEX33"
TCGA.A6.2678	22	37010853	51186227	4587	-0.1464	NEUTRAL	NA	202	Too-Many
TCGA.AA.A00L.01A	22	37209650	37469533	42	0.283	NEUTRAL	NA	8	"CSF2RB,KCTD17,MPST,NCF4,PVALB,TEX33,TMPRSS6,TST"
TCGA.CK.5914.01A	22	37212923	37420241	28	0.2061	NEUTRAL	NA	6	"CSF2RB,MPST,NCF4,PVALB,TEX33,TST"
TCGA.AG.A01W.01A	22	37245929	37407894	32	-0.363	NEUTRAL	NA	4	"CSF2RB,NCF4,TEX33,TST"
TCGA.AA.A00D.01A	22	37257133	37414161	25	-0.06	NEUTRAL	NA	4	"CSF2RB,NCF4,TEX33,TST"
TCGA.AG.3909.01A	22	37260913	37407046	22	0.3571	NEUTRAL	NA	4	"CSF2RB,NCF4,TEX33,TST"
TCGA.AA.A01Q.01A	22	37266407	37407046	20	0.1094	NEUTRAL	NA	4	"CSF2RB,NCF4,TEX33,TST"
TCGA.AG.3584	22	37357168	38799860	364	0.3291	NEUTRAL	NA	38	"ANKRD54,BAIAP2L2,C1QTNF6,C22orf23,CARD10,CDC42EP1,CSNK1E,CYTH4,EIF3L,ELFN2,GALR3,GCAT,GGA1,H1F0,IL2RB,KCTD17,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MFNG,MICALL1,MPST,NOL12,PDXP,PICK1,PLA2G6,POLR2F,RAC2,SH3BP1,SLC16A8,SOX10,SSTR3,TEX33,TMEM184B,TMPRSS6,TRIOBP,TST"
TCGA.AA.3870	22	37366557	51186227	4448	-0.4701	NEUTRAL	NA	197	Too-Many
TCGA.AA.A00N.01A	22	37387179	37420241	9	0.0822	NEUTRAL	NA	3	"MPST,TEX33,TST"
TCGA.AG.A01W.01A	22	37408247	37477115	30	0.1912	NEUTRAL	NA	4	"KCTD17,MPST,TMPRSS6,TST"
TCGA.AG.3909.01A	22	37414161	37603336	40	-0.146	NEUTRAL	NA	7	"C1QTNF6,IL2RB,KCTD17,MPST,SSTR3,TMPRSS6,TST"
TCGA.AA.A01Q.01A	22	37414161	39928359	433	-0.4083	NEUTRAL	NA	67	"ANKRD54,APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,BAIAP2L2,C1QTNF6,C22orf23,CARD10,CBX6,CBX7,CBY1,CDC42EP1,CSNK1E,CYTH4,DDX17,DMC1,DNAL4,EIF3L,ELFN2,FAM227A,GALR3,GCAT,GGA1,GTPBP1,H1F0,IL2RB,JOSD1,KCNJ4,KCTD17,KDELR3,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MFNG,MGAT3,MICALL1,MIEF1,MPST,NOL12,NPTXR,PDGFB,PDXP,PICK1,PLA2G6,POLR2F,RAC2,RPL3,RPS19BP1,SH3BP1,SLC16A8,SOX10,SSTR3,SUN2,SYNGR1,TAB1,TMEM184B,TMPRSS6,TOMM22,TRIOBP,TST"
TCGA.CK.5914.01A	22	37420986	38258910	191	-0.4458	NEUTRAL	NA	24	"ANKRD54,C1QTNF6,CARD10,CDC42EP1,CYTH4,EIF3L,ELFN2,GALR3,GCAT,GGA1,H1F0,IL2RB,KCTD17,LGALS1,LGALS2,MFNG,MPST,NOL12,PDXP,RAC2,SH3BP1,SSTR3,TMPRSS6,TRIOBP"
TCGA.AA.A00D.01A	22	37425309	38870490	220	0.3441	NEUTRAL	NA	38	"ANKRD54,BAIAP2L2,C1QTNF6,C22orf23,CARD10,CDC42EP1,CSNK1E,CYTH4,EIF3L,ELFN2,GALR3,GCAT,GGA1,H1F0,IL2RB,KCNJ4,KCTD17,KDELR3,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MFNG,MICALL1,MPST,NOL12,PDXP,PICK1,PLA2G6,POLR2F,RAC2,SH3BP1,SLC16A8,SOX10,SSTR3,TMEM184B,TMPRSS6,TRIOBP"
TCGA.AG.4009.01A	22	37466472	37893008	57	0.2736	NEUTRAL	NA	9	"C1QTNF6,CARD10,CYTH4,ELFN2,IL2RB,MFNG,RAC2,SSTR3,TMPRSS6"
TCGA.AA.A010.01A	22	37480130	37890043	61	0.3305	NEUTRAL	NA	9	"C1QTNF6,CARD10,CYTH4,ELFN2,IL2RB,MFNG,RAC2,SSTR3,TMPRSS6"
TCGA.AG.A01W.01A	22	37552425	37597389	4	0.1418	NEUTRAL	NA	1	C1QTNF6
TCGA.AA.A00L.01A	22	37578211	37627233	7	0.1178	NEUTRAL	NA	3	"C1QTNF6,RAC2,SSTR3"
TCGA.AA.3688	22	37648898	51186227	4336	0.0042	NEUTRAL	NA	188	Too-Many
TCGA.AG.3909.01A	22	37688603	38046512	61	-0.3363	NEUTRAL	NA	8	"CARD10,CDC42EP1,CYTH4,ELFN2,GGA1,LGALS2,MFNG,SH3BP1"
TCGA.AA.A00N.01A	22	37690666	38164988	113	-0.2757	NEUTRAL	NA	12	"CARD10,CDC42EP1,CYTH4,ELFN2,GGA1,LGALS1,LGALS2,MFNG,NOL12,PDXP,SH3BP1,TRIOBP"
TCGA.CK.4952.01A	22	37740226	38296655	88	-0.1698	NEUTRAL	NA	16	"ANKRD54,CARD10,CDC42EP1,EIF3L,ELFN2,GALR3,GCAT,GGA1,H1F0,LGALS1,LGALS2,MFNG,NOL12,PDXP,SH3BP1,TRIOBP"
TCGA.D5.6923	22	37751697	42461435	878	0.0204	NEUTRAL	NA	97	"ACO2,ADSL,ANKRD54,APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,BAIAP2L2,C22orf23,C22orf46,CACNA1I,CARD10,CBX6,CBX7,CBY1,CCDC134,CDC42EP1,CENPM,CHADL,CSDC2,CSNK1E,DDX17,DESI1,DMC1,DNAJB7,DNAL4,EIF3L,ELFN2,ENTHD1,EP300,FAM227A,FAM83F,GALR3,GCAT,GGA1,GRAP2,GTPBP1,H1F0,JOSD1,KCNJ4,KDELR3,L3MBTL2,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MCHR1,MEI1,MFNG,MGAT3,MICALL1,MIEF1,MKL1,NAGA,NHP2L1,NOL12,NPTXR,PDGFB,PDXP,PHF5A,PICK1,PLA2G6,PMM1,POLR2F,POLR3H,RANGAP1,RBX1,RPL3,RPS19BP1,SEPT3,SGSM3,SH3BP1,SHISA8,SLC16A8,SLC25A17,SOX10,SREBF2,ST13,SUN2,SYNGR1,TAB1,TEF,TMEM184B,TNFRSF13C,TNRC6B,TOB2,TOMM22,TRIOBP,WBP2NL,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AA.3844	22	37751697	46916959	2430	0.2317	NEUTRAL	NA	148	Too-Many
TCGA.AA.3558	22	37751697	51186227	4303	-0.0254	NEUTRAL	NA	187	Too-Many
TCGA.AA.3975	22	37751697	51186227	4300	0.0033	NEUTRAL	NA	187	Too-Many
TCGA.AA.A01T	22	37751697	51186227	4299	-0.242	NEUTRAL	NA	187	Too-Many
TCGA.AZ.6605	22	37751697	51186227	4295	-0.2024	NEUTRAL	NA	187	Too-Many
TCGA.EI.7004	22	37751697	51186227	4303	-0.0049	NEUTRAL	NA	187	Too-Many
TCGA.F4.6460	22	37751697	51186227	4303	-0.4288	NEUTRAL	NA	187	Too-Many
TCGA.AG.A01W.01A	22	37803225	39127488	154	-0.0706	NEUTRAL	NA	37	"ANKRD54,BAIAP2L2,C22orf23,CARD10,CBY1,CDC42EP1,CSNK1E,DDX17,DMC1,EIF3L,ELFN2,FAM227A,GALR3,GCAT,GGA1,GTPBP1,H1F0,JOSD1,KCNJ4,KDELR3,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MFNG,MICALL1,NOL12,PDXP,PICK1,PLA2G6,POLR2F,SH3BP1,SLC16A8,SOX10,TMEM184B,TOMM22,TRIOBP"
TCGA.AM.5820	22	37830377	38877917	202	0.357	NEUTRAL	NA	29	"ANKRD54,BAIAP2L2,C22orf23,CARD10,CDC42EP1,CSNK1E,EIF3L,GALR3,GCAT,GGA1,H1F0,KCNJ4,KDELR3,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MFNG,MICALL1,NOL12,PDXP,PICK1,PLA2G6,POLR2F,SH3BP1,SLC16A8,SOX10,TMEM184B,TRIOBP"
TCGA.AA.A00L.01A	22	37887711	38071614	48	0.2624	NEUTRAL	NA	7	"CARD10,CDC42EP1,GGA1,LGALS1,LGALS2,PDXP,SH3BP1"
TCGA.AA.A010.01A	22	37891460	38028362	36	-0.4207	NEUTRAL	NA	4	"CARD10,CDC42EP1,GGA1,LGALS2"
TCGA.AG.4009.01A	22	37898569	38168571	56	-0.3592	NEUTRAL	NA	9	"CARD10,CDC42EP1,GGA1,LGALS1,LGALS2,NOL12,PDXP,SH3BP1,TRIOBP"
TCGA.AG.3906.01A	22	38010149	38039611	14	0.034	NEUTRAL	NA	2	"GGA1,SH3BP1"
TCGA.AG.3909.01A	22	38049736	38097346	10	0.0823	NEUTRAL	NA	5	"LGALS1,NOL12,PDXP,SH3BP1,TRIOBP"
TCGA.AA.A010.01A	22	38082341	38111728	10	-0.1279	NEUTRAL	NA	2	"NOL12,TRIOBP"
TCGA.AA.A00L.01A	22	38153972	38245948	20	-0.034	NEUTRAL	NA	6	"ANKRD54,EIF3L,GALR3,GCAT,H1F0,TRIOBP"
TCGA.AG.3909.01A	22	38208842	38626615	91	-0.1101	NEUTRAL	NA	14	"ANKRD54,BAIAP2L2,C22orf23,EIF3L,GALR3,GCAT,MAFF,MICALL1,PICK1,PLA2G6,POLR2F,SLC16A8,SOX10,TMEM184B"
TCGA.AG.A00H.01A	22	38247277	51220568	1117	-0.3111	NEUTRAL	NA	173	Too-Many
TCGA.AG.4009.01A	22	38251515	38313657	13	-0.2832	NEUTRAL	NA	2	"EIF3L,MICALL1"
TCGA.AA.A00N.01A	22	38266152	38626615	101	-0.397	NEUTRAL	NA	11	"BAIAP2L2,C22orf23,EIF3L,MAFF,MICALL1,PICK1,PLA2G6,POLR2F,SLC16A8,SOX10,TMEM184B"
TCGA.AF.3914.01A	22	38266152	38692520	86	-0.2922	NEUTRAL	NA	13	"BAIAP2L2,C22orf23,CSNK1E,EIF3L,LOC400927-CSNK1E,MAFF,MICALL1,PICK1,PLA2G6,POLR2F,SLC16A8,SOX10,TMEM184B"
TCGA.A6.3808.01A	22	38284405	42951970	764	-0.1474	NEUTRAL	NA	90	"ACO2,ADSL,APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,BAIAP2L2,C22orf23,C22orf46,CACNA1I,CBX6,CBX7,CBY1,CCDC134,CENPM,CHADL,CSDC2,CSNK1E,CYP2D6,DDX17,DESI1,DMC1,DNAJB7,DNAL4,EIF3L,ENTHD1,EP300,FAM109B,FAM227A,FAM83F,GRAP2,GTPBP1,JOSD1,KCNJ4,KDELR3,L3MBTL2,LOC400927-CSNK1E,MAFF,MCHR1,MEI1,MGAT3,MICALL1,MIEF1,MKL1,NAGA,NDUFA6,NFAM1,NHP2L1,NPTXR,PDGFB,PHF5A,PICK1,PLA2G6,PMM1,POLR2F,POLR3H,RANGAP1,RBX1,RPL3,RPS19BP1,RRP7A,SEPT3,SERHL2,SGSM3,SHISA8,SLC16A8,SLC25A17,SMDT1,SOX10,SREBF2,ST13,SUN2,SYNGR1,TAB1,TCF20,TEF,TMEM184B,TNFRSF13C,TNRC6B,TOB2,TOMM22,WBP2NL,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AA.A010.01A	22	38317987	38349703	15	-0.43	NEUTRAL	NA	3	"C22orf23,MICALL1,POLR2F"
TCGA.AG.4009.01A	22	38317987	38369491	19	0.1019	NEUTRAL	NA	4	"C22orf23,MICALL1,POLR2F,SOX10"
TCGA.AG.3891.01A	22	38464997	51220568	1286	0.1889	NEUTRAL	NA	168	Too-Many
TCGA.AG.A00Y.01A	22	38468957	51010388	1122	-0.1211	NEUTRAL	NA	162	Too-Many
TCGA.AG.4009.01A	22	38492992	38690077	29	-0.1032	NEUTRAL	NA	6	"BAIAP2L2,CSNK1E,LOC400927-CSNK1E,MAFF,PLA2G6,TMEM184B"
TCGA.AG.3906.01A	22	38503793	39137439	90	0.0543	NEUTRAL	NA	16	"BAIAP2L2,CBY1,CSNK1E,DDX17,DMC1,FAM227A,GTPBP1,JOSD1,KCNJ4,KDELR3,LOC400927-CSNK1E,MAFF,PLA2G6,SUN2,TMEM184B,TOMM22"
TCGA.AA.A010.01A	22	38505078	38565187	24	0.237	NEUTRAL	NA	2	"BAIAP2L2,PLA2G6"
TCGA.RU.A8FL	22	38815542	51186227	4088	-0.2342	NEUTRAL	NA	159	Too-Many
TCGA.AG.3611.01A	22	38864186	38891794	12	-0.3998	NEUTRAL	NA	2	"DDX17,KDELR3"
TCGA.AF.3914.01A	22	38864186	40045454	172	-0.2421	NEUTRAL	NA	30	"APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,CACNA1I,CBX6,CBX7,CBY1,DDX17,DMC1,DNAL4,FAM227A,GTPBP1,JOSD1,KDELR3,MGAT3,MIEF1,NPTXR,PDGFB,RPL3,RPS19BP1,SUN2,SYNGR1,TAB1,TOMM22"
TCGA.AM.5820	22	38878206	39115672	43	-0.4375	NEUTRAL	NA	8	"CBY1,DDX17,DMC1,FAM227A,GTPBP1,JOSD1,KDELR3,TOMM22"
TCGA.AG.3611.01A	22	38894036	39144653	48	-0.0387	NEUTRAL	NA	8	"CBY1,DDX17,DMC1,FAM227A,GTPBP1,JOSD1,SUN2,TOMM22"
TCGA.AA.A010.01A	22	38895358	38934262	8	-0.0244	NEUTRAL	NA	2	"DDX17,DMC1"
TCGA.CK.4952.01A	22	38904002	42463031	540	-0.1411	NEUTRAL	NA	66	"ACO2,ADSL,APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,C22orf46,CACNA1I,CBX6,CBX7,CBY1,CCDC134,CENPM,CHADL,CSDC2,DESI1,DMC1,DNAJB7,DNAL4,ENTHD1,EP300,FAM227A,FAM83F,GRAP2,GTPBP1,JOSD1,L3MBTL2,MCHR1,MEI1,MGAT3,MIEF1,MKL1,NAGA,NHP2L1,NPTXR,PDGFB,PHF5A,PMM1,POLR3H,RANGAP1,RBX1,RPL3,RPS19BP1,SEPT3,SGSM3,SHISA8,SLC25A17,SREBF2,ST13,SUN2,SYNGR1,TAB1,TEF,TNFRSF13C,TNRC6B,TOB2,TOMM22,WBP2NL,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AG.4009.01A	22	38915973	39079720	19	-0.0294	NEUTRAL	NA	4	"CBY1,DMC1,FAM227A,TOMM22"
TCGA.AA.A00N.01A	22	38978797	39041513	16	0.2652	NEUTRAL	NA	1	FAM227A
TCGA.CK.5914.01A	22	38978797	39041513	16	1.00E-04	NEUTRAL	NA	1	FAM227A
TCGA.CK.5914.01A	22	39045984	39078280	6	-0.4978	NEUTRAL	NA	3	"CBY1,FAM227A,TOMM22"
TCGA.AA.A010.01A	22	39064002	39077953	4	-0.0415	NEUTRAL	NA	2	"CBY1,TOMM22"
TCGA.CK.5914.01A	22	39111890	39222488	33	-0.4385	NEUTRAL	NA	4	"DNAL4,GTPBP1,NPTXR,SUN2"
TCGA.AG.4009.01A	22	39117740	39138287	15	-0.2922	NEUTRAL	NA	2	"GTPBP1,SUN2"
TCGA.AA.A00N.01A	22	39117740	39358421	39	-0.1107	NEUTRAL	NA	7	"APOBEC3A,APOBEC3A_B,CBX6,DNAL4,GTPBP1,NPTXR,SUN2"
TCGA.AA.A00D.01A	22	39121972	40742532	133	0.3527	NEUTRAL	NA	28	"ADSL,APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,CACNA1I,CBX6,CBX7,DNAL4,ENTHD1,FAM83F,GRAP2,GTPBP1,MGAT3,MIEF1,NPTXR,PDGFB,RPL3,RPS19BP1,SUN2,SYNGR1,TAB1,TNRC6B"
TCGA.AG.3909.01A	22	39123166	39387999	39	-0.0093	NEUTRAL	NA	8	"APOBEC3A,APOBEC3A_B,APOBEC3B,CBX6,DNAL4,GTPBP1,NPTXR,SUN2"
TCGA.AG.3611.01A	22	39145721	39262187	12	-0.3805	NEUTRAL	NA	4	"CBX6,DNAL4,NPTXR,SUN2"
TCGA.AG.A01W.01A	22	39149440	39975642	105	-0.1392	NEUTRAL	NA	22	"APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,CACNA1I,CBX6,CBX7,DNAL4,MGAT3,MIEF1,NPTXR,PDGFB,RPL3,RPS19BP1,SUN2,SYNGR1,TAB1"
TCGA.CK.5914.01A	22	39224275	39387999	16	0.1271	NEUTRAL	NA	5	"APOBEC3A,APOBEC3A_B,APOBEC3B,CBX6,NPTXR"
TCGA.AG.3611.01A	22	39267431	39358063	5	0.0991	NEUTRAL	NA	3	"APOBEC3A,APOBEC3A_B,CBX6"
TCGA.AM.5820	22	39272640	39331345	18	-0.1933	NEUTRAL	NA	0	None
TCGA.AF.2693	22	39277702	40328049	214	-0.0764	NEUTRAL	NA	20	"APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,CACNA1I,CBX7,ENTHD1,GRAP2,MGAT3,MIEF1,PDGFB,RPL3,RPS19BP1,SYNGR1,TAB1"
TCGA.AM.5820	22	39332228	39758932	84	0.2857	NEUTRAL	NA	12	"APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,CBX7,PDGFB,RPL3,SYNGR1"
TCGA.AG.4009.01A	22	39353611	39499642	42	0.2778	NEUTRAL	NA	8	"APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H"
TCGA.AG.3909.01A	22	39410280	39907258	66	-0.4001	NEUTRAL	NA	12	"APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,CBX7,MGAT3,MIEF1,PDGFB,RPL3,SYNGR1,TAB1"
TCGA.A6.3810.01A	22	39410280	50704918	1238	-0.4507	NEUTRAL	NA	124	Too-Many
TCGA.AG.3611.01A	22	39410280	51216317	949	-0.1138	NEUTRAL	NA	144	Too-Many
TCGA.AA.A00N.01A	22	39411550	39482976	25	0.0715	NEUTRAL	NA	4	"APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G"
TCGA.AG.3906.01A	22	39473285	40798076	133	0.0088	NEUTRAL	NA	18	"ADSL,APOBEC3G,APOBEC3H,ATF4,CACNA1I,CBX7,ENTHD1,FAM83F,GRAP2,MGAT3,MIEF1,PDGFB,RPL3,RPS19BP1,SGSM3,SYNGR1,TAB1,TNRC6B"
TCGA.AG.4009.01A	22	39529849	39636788	9	-0.3834	NEUTRAL	NA	2	"CBX7,PDGFB"
TCGA.DM.A1D7	22	39667132	41078472	256	0.2014	NEUTRAL	NA	16	"ADSL,ATF4,CACNA1I,ENTHD1,FAM83F,GRAP2,MCHR1,MGAT3,MIEF1,MKL1,RPL3,RPS19BP1,SGSM3,SYNGR1,TAB1,TNRC6B"
TCGA.AA.A010.01A	22	39708870	39715452	11	-0.1306	NEUTRAL	NA	1	RPL3
TCGA.AG.4009.01A	22	39708870	39832445	26	0.1531	NEUTRAL	NA	3	"RPL3,SYNGR1,TAB1"
TCGA.AA.A00N.01A	22	39710670	39832445	26	-0.0075	NEUTRAL	NA	3	"RPL3,SYNGR1,TAB1"
TCGA.AA.A010.01A	22	39773553	39825973	13	-0.0487	NEUTRAL	NA	2	"SYNGR1,TAB1"
TCGA.AM.5820	22	39792942	40089892	69	0.2499	NEUTRAL	NA	6	"ATF4,CACNA1I,MGAT3,MIEF1,RPS19BP1,TAB1"
TCGA.AG.3909.01A	22	39925450	40068157	26	-0.5027	NEUTRAL	NA	2	"CACNA1I,RPS19BP1"
TCGA.AG.4009.01A	22	39925778	40045454	10	-0.0435	NEUTRAL	NA	2	"CACNA1I,RPS19BP1"
TCGA.AA.A01Q.01A	22	39966709	40366862	19	0.2748	NEUTRAL	NA	3	"CACNA1I,ENTHD1,GRAP2"
TCGA.AG.3909.01A	22	40068907	40742532	48	0.0327	NEUTRAL	NA	6	"ADSL,CACNA1I,ENTHD1,FAM83F,GRAP2,TNRC6B"
TCGA.AF.3914.01A	22	40080275	46642961	724	-0.1927	NEUTRAL	NA	85	"A4GALT,ACO2,ADSL,ARFGAP3,ARHGAP8,ATP5L2,ATXN10,BIK,C22orf46,CACNA1I,CCDC134,CDPF1,CENPM,CHADL,CSDC2,CYB5R3,CYP2D6,DESI1,DNAJB7,EFCAB6,ENTHD1,EP300,FAM109B,FAM118A,FAM83F,FBLN1,GRAP2,KIAA0930,KIAA1644,L3MBTL2,LDOC1L,MCAT,MCHR1,MEI1,MKL1,MPPED1,NAGA,NDUFA6,NFAM1,NHP2L1,NUP50,PACSIN2,PARVB,PARVG,PHF21B,PHF5A,PMM1,PNPLA3,PNPLA5,POLDIP3,POLR3H,PPARA,PRR34,PRR5,PRR5-ARHGAP8,RANGAP1,RBX1,RIBC2,RRP7A,SAMM50,SCUBE1,SEPT3,SERHL2,SGSM3,SHISA8,SLC25A17,SMC1B,SMDT1,SREBF2,ST13,SULT4A1,TCF20,TEF,TNFRSF13C,TNRC6B,TOB2,TSPO,TTLL1,TTLL12,UPK3A,WBP2NL,WNT7B,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AA.A00N.01A	22	40081729	40742532	45	0.3162	NEUTRAL	NA	6	"ADSL,CACNA1I,ENTHD1,FAM83F,GRAP2,TNRC6B"
TCGA.AG.A01W.01A	22	40095621	40241670	18	-0.4144	NEUTRAL	NA	1	ENTHD1
TCGA.DM.A28F	22	40105780	51186227	3801	-0.0559	NEUTRAL	NA	128	Too-Many
TCGA.CK.5914.01A	22	40139672	40391059	14	0.3697	NEUTRAL	NA	3	"ENTHD1,FAM83F,GRAP2"
TCGA.AG.4009.01A	22	40139672	41574309	143	-0.0212	NEUTRAL	NA	14	"ADSL,DNAJB7,ENTHD1,EP300,FAM83F,GRAP2,MCHR1,MKL1,RBX1,SGSM3,SLC25A17,ST13,TNRC6B,XPNPEP3"
TCGA.AG.A01W.01A	22	40243431	40256616	14	0.3093	NEUTRAL	NA	1	ENTHD1
TCGA.AG.A01W.01A	22	40257977	40606615	82	-0.381	NEUTRAL	NA	4	"ENTHD1,FAM83F,GRAP2,TNRC6B"
TCGA.G4.6303	22	40375702	51186227	3760	-0.0946	NEUTRAL	NA	126	Too-Many
TCGA.CK.5914.01A	22	40415120	40742532	30	-0.2146	NEUTRAL	NA	3	"ADSL,FAM83F,TNRC6B"
TCGA.AA.A01Q.01A	22	40415120	40831439	44	-0.1433	NEUTRAL	NA	5	"ADSL,FAM83F,MKL1,SGSM3,TNRC6B"
TCGA.AG.A01W.01A	22	40610742	42160912	190	-0.0323	NEUTRAL	NA	27	"ACO2,ADSL,C22orf46,CHADL,CSDC2,DESI1,DNAJB7,EP300,L3MBTL2,MCHR1,MEI1,MKL1,NHP2L1,PHF5A,PMM1,POLR3H,RANGAP1,RBX1,SGSM3,SLC25A17,ST13,TEF,TNRC6B,TOB2,XPNPEP3,XRCC6,ZC3H7B"
TCGA.QG.A5Z1	22	40703887	46207700	1643	-0.0566	NEUTRAL	NA	77	"A4GALT,ACO2,ADSL,ARFGAP3,ARHGAP8,ATP5L2,ATXN10,BIK,C22orf46,CCDC134,CENPM,CHADL,CSDC2,CYB5R3,CYP2D6,DESI1,DNAJB7,EFCAB6,EP300,FAM109B,FAM118A,FBLN1,KIAA0930,KIAA1644,L3MBTL2,LDOC1L,MCAT,MCHR1,MEI1,MKL1,MPPED1,NAGA,NDUFA6,NFAM1,NHP2L1,NUP50,PACSIN2,PARVB,PARVG,PHF21B,PHF5A,PMM1,PNPLA3,PNPLA5,POLDIP3,POLR3H,PRR5,PRR5-ARHGAP8,RANGAP1,RBX1,RIBC2,RRP7A,SAMM50,SCUBE1,SEPT3,SERHL2,SGSM3,SHISA8,SLC25A17,SMC1B,SMDT1,SREBF2,ST13,SULT4A1,TCF20,TEF,TNFRSF13C,TNRC6B,TOB2,TSPO,TTLL1,TTLL12,UPK3A,WBP2NL,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AA.A00Q.01A	22	40742532	41076966	39	-0.2443	NEUTRAL	NA	4	"ADSL,MCHR1,MKL1,SGSM3"
TCGA.AA.A00N.01A	22	40796723	41076966	28	0.0389	NEUTRAL	NA	3	"MCHR1,MKL1,SGSM3"
TCGA.CK.5914.01A	22	40796723	42119900	239	-0.3127	NEUTRAL	NA	25	"ACO2,C22orf46,CHADL,CSDC2,DESI1,DNAJB7,EP300,L3MBTL2,MCHR1,MEI1,MKL1,NHP2L1,PHF5A,PMM1,POLR3H,RANGAP1,RBX1,SGSM3,SLC25A17,ST13,TEF,TOB2,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AA.A00D.01A	22	40797542	41076966	26	0.2823	NEUTRAL	NA	3	"MCHR1,MKL1,SGSM3"
TCGA.AG.3909.01A	22	40797542	41173002	29	-0.4356	NEUTRAL	NA	4	"MCHR1,MKL1,SGSM3,SLC25A17"
TCGA.AG.3906.01A	22	40814381	46642961	621	0.0102	NEUTRAL	NA	78	"A4GALT,ACO2,ARFGAP3,ARHGAP8,ATP5L2,ATXN10,BIK,C22orf46,CCDC134,CDPF1,CENPM,CHADL,CSDC2,CYB5R3,CYP2D6,DESI1,DNAJB7,EFCAB6,EP300,FAM109B,FAM118A,FBLN1,KIAA0930,KIAA1644,L3MBTL2,LDOC1L,MCAT,MCHR1,MEI1,MKL1,MPPED1,NAGA,NDUFA6,NFAM1,NHP2L1,NUP50,PACSIN2,PARVB,PARVG,PHF21B,PHF5A,PMM1,PNPLA3,PNPLA5,POLDIP3,POLR3H,PPARA,PRR34,PRR5,PRR5-ARHGAP8,RANGAP1,RBX1,RIBC2,RRP7A,SAMM50,SCUBE1,SEPT3,SERHL2,SHISA8,SLC25A17,SMC1B,SMDT1,SREBF2,ST13,SULT4A1,TCF20,TEF,TNFRSF13C,TOB2,TSPO,TTLL1,TTLL12,UPK3A,WBP2NL,WNT7B,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AA.A01Q.01A	22	40859171	41569580	65	0.2454	NEUTRAL	NA	8	"DNAJB7,EP300,MCHR1,MKL1,RBX1,SLC25A17,ST13,XPNPEP3"
TCGA.AA.A00Q.01A	22	41166800	51220568	840	0.1634	NEUTRAL	NA	121	Too-Many
TCGA.AG.3909.01A	22	41264986	41745072	87	0.0151	NEUTRAL	NA	7	"CHADL,EP300,L3MBTL2,RANGAP1,RBX1,XPNPEP3,ZC3H7B"
TCGA.AA.A00N.01A	22	41277732	41521841	17	-0.2204	NEUTRAL	NA	3	"EP300,RBX1,XPNPEP3"
TCGA.AA.A00N.01A	22	41558654	41569580	8	-0.3121	NEUTRAL	NA	1	EP300
TCGA.AA.A010.01A	22	41565484	41574309	8	-0.3324	NEUTRAL	NA	1	EP300
TCGA.AA.A00N.01A	22	41601282	41676890	37	-0.3355	NEUTRAL	NA	3	"CHADL,L3MBTL2,RANGAP1"
TCGA.AA.A01Q.01A	22	41605660	41626101	15	-0.4784	NEUTRAL	NA	2	"CHADL,L3MBTL2"
TCGA.AA.A010.01A	22	41632436	41716600	20	-0.463	NEUTRAL	NA	3	"CHADL,RANGAP1,ZC3H7B"
TCGA.AA.A01Q.01A	22	41642554	41903773	45	-0.1481	NEUTRAL	NA	6	"ACO2,PHF5A,RANGAP1,TEF,TOB2,ZC3H7B"
TCGA.AG.4009.01A	22	41648836	41676890	9	-0.1648	NEUTRAL	NA	1	RANGAP1
TCGA.AA.A00N.01A	22	41716600	41745072	14	0.2888	NEUTRAL	NA	1	ZC3H7B
TCGA.AG.4009.01A	22	41716600	41924451	46	0.2269	NEUTRAL	NA	6	"ACO2,PHF5A,POLR3H,TEF,TOB2,ZC3H7B"
TCGA.AA.A010.01A	22	41721487	42276668	138	0.3255	NEUTRAL	NA	15	"ACO2,C22orf46,CCDC134,CSDC2,DESI1,MEI1,NHP2L1,PHF5A,PMM1,POLR3H,SREBF2,TEF,TOB2,XRCC6,ZC3H7B"
TCGA.AG.3731	22	41722863	41949258	42	0.1917	NEUTRAL	NA	6	"ACO2,PHF5A,POLR3H,TEF,TOB2,ZC3H7B"
TCGA.AG.3909.01A	22	41864535	41997051	33	-0.0885	NEUTRAL	NA	6	"ACO2,CSDC2,DESI1,PHF5A,PMM1,POLR3H"
TCGA.AG.4009.01A	22	41925226	45802304	420	-0.089	NEUTRAL	NA	55	"A4GALT,ARFGAP3,ARHGAP8,ATP5L2,BIK,C22orf46,CCDC134,CENPM,CSDC2,CYB5R3,CYP2D6,DESI1,EFCAB6,FAM109B,FAM118A,KIAA0930,KIAA1644,LDOC1L,MCAT,MEI1,MPPED1,NAGA,NDUFA6,NFAM1,NHP2L1,NUP50,PACSIN2,PARVB,PARVG,PHF21B,PMM1,PNPLA3,PNPLA5,POLDIP3,POLR3H,PRR5,PRR5-ARHGAP8,RRP7A,SAMM50,SCUBE1,SEPT3,SERHL2,SHISA8,SMC1B,SMDT1,SREBF2,SULT4A1,TCF20,TNFRSF13C,TSPO,TTLL1,TTLL12,UPK3A,WBP2NL,XRCC6"
TCGA.AA.A00N.01A	22	41928030	41997051	17	-0.3393	NEUTRAL	NA	4	"CSDC2,DESI1,PMM1,POLR3H"
TCGA.AG.3731	22	41958861	44404483	691	-0.1912	NEUTRAL	NA	42	"A4GALT,ARFGAP3,ATP5L2,BIK,C22orf46,CCDC134,CENPM,CSDC2,CYB5R3,CYP2D6,DESI1,EFCAB6,FAM109B,MCAT,MEI1,MPPED1,NAGA,NDUFA6,NFAM1,NHP2L1,PACSIN2,PARVB,PMM1,PNPLA3,PNPLA5,POLDIP3,RRP7A,SAMM50,SCUBE1,SEPT3,SERHL2,SHISA8,SMDT1,SREBF2,SULT4A1,TCF20,TNFRSF13C,TSPO,TTLL1,TTLL12,WBP2NL,XRCC6"
TCGA.AA.A01Q.01A	22	41967918	42016703	16	0.1326	NEUTRAL	NA	3	"CSDC2,DESI1,PMM1"
TCGA.DM.A1D7	22	42002893	42012456	6	0.027	NEUTRAL	NA	1	DESI1
TCGA.AA.A01Q.01A	22	42017959	42057293	11	-0.3639	NEUTRAL	NA	1	XRCC6
TCGA.AA.3862.01A	22	42046685	42486561	108	-0.2703	NEUTRAL	NA	15	"C22orf46,CCDC134,CENPM,FAM109B,MEI1,NAGA,NDUFA6,NHP2L1,SEPT3,SHISA8,SMDT1,SREBF2,TNFRSF13C,WBP2NL,XRCC6"
TCGA.AA.A01Q.01A	22	42059577	42280795	30	0.2342	NEUTRAL	NA	6	"C22orf46,CCDC134,MEI1,NHP2L1,SREBF2,XRCC6"
TCGA.AG.A008.01A	22	42101447	51220568	731	0.1674	NEUTRAL	NA	100	"A4GALT,ACR,ADM2,ALG12,ARFGAP3,ARHGAP8,ARSA,ATP5L2,ATXN10,BIK,BRD1,C22orf34,CCDC134,CDPF1,CELSR1,CENPM,CERK,CHKB,CPT1B,CRELD2,CYB5R3,CYP2D6,DENND6B,EFCAB6,FAM109B,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MEI1,MIOX,MLC1,MOV10L1,MPPED1,NAGA,NCAPH2,NDUFA6,NFAM1,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,POLDIP3,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RABL2B,RIBC2,RRP7A,SAMM50,SBF1,SCO2,SCUBE1,SELO,SEPT3,SERHL2,SHANK3,SHISA8,SMC1B,SMDT1,SREBF2,SULT4A1,SYCE3,TBC1D22A,TCF20,TNFRSF13C,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WBP2NL,WNT7B,ZBED4"
TCGA.CK.5914.01A	22	42125641	42266843	33	0.3174	NEUTRAL	NA	3	"CCDC134,MEI1,SREBF2"
TCGA.AG.3909.01A	22	42189817	42221665	11	-0.3141	NEUTRAL	NA	2	"CCDC134,MEI1"
TCGA.AA.A00N.01A	22	42189817	42381941	43	-0.2858	NEUTRAL	NA	7	"CCDC134,CENPM,MEI1,SEPT3,SHISA8,SREBF2,TNFRSF13C"
TCGA.A6.5660	22	42259097	51186227	3468	-0.4944	NEUTRAL	NA	97	"A4GALT,ACR,ADM2,ALG12,ARFGAP3,ARHGAP8,ARSA,ATP5L2,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CENPM,CERK,CHKB,CPT1B,CRELD2,CYB5R3,CYP2D6,DENND6B,EFCAB6,FAM109B,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NAGA,NCAPH2,NDUFA6,NFAM1,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,POLDIP3,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,RRP7A,SAMM50,SBF1,SCO2,SCUBE1,SELO,SEPT3,SERHL2,SHANK3,SHISA8,SMC1B,SMDT1,SREBF2,SULT4A1,SYCE3,TBC1D22A,TCF20,TNFRSF13C,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WBP2NL,WNT7B,ZBED4"
TCGA.DM.A1D7	22	42269531	42299534	8	0.1302	NEUTRAL	NA	1	SREBF2
TCGA.CK.5914.01A	22	42269755	43203023	124	-0.4869	NEUTRAL	NA	20	"A4GALT,ARFGAP3,ATP5L2,CENPM,CYB5R3,CYP2D6,FAM109B,NAGA,NDUFA6,NFAM1,POLDIP3,RRP7A,SEPT3,SERHL2,SHISA8,SMDT1,SREBF2,TCF20,TNFRSF13C,WBP2NL"
TCGA.AG.3909.01A	22	42289103	42294613	4	-0.4084	NEUTRAL	NA	1	SREBF2
TCGA.AA.A01Q.01A	22	42289103	42390598	25	-0.405	NEUTRAL	NA	5	"CENPM,SEPT3,SHISA8,SREBF2,TNFRSF13C"
TCGA.AG.A01W.01A	22	42303470	43958972	131	-2.00E-04	NEUTRAL	NA	28	"A4GALT,ARFGAP3,ATP5L2,BIK,CENPM,CYB5R3,CYP2D6,EFCAB6,FAM109B,MCAT,MPPED1,NAGA,NDUFA6,NFAM1,PACSIN2,POLDIP3,RRP7A,SCUBE1,SEPT3,SERHL2,SHISA8,SMDT1,TCF20,TNFRSF13C,TSPO,TTLL1,TTLL12,WBP2NL"
TCGA.DM.A1D7	22	42317110	42347059	6	-0.4424	NEUTRAL	NA	2	"CENPM,TNFRSF13C"
TCGA.A6.6653	22	42344296	51186227	3457	-0.0745	NEUTRAL	NA	93	"A4GALT,ACR,ADM2,ALG12,ARFGAP3,ARHGAP8,ARSA,ATP5L2,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,CYB5R3,CYP2D6,DENND6B,EFCAB6,FAM109B,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NAGA,NCAPH2,NDUFA6,NFAM1,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,POLDIP3,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,RRP7A,SAMM50,SBF1,SCO2,SCUBE1,SELO,SEPT3,SERHL2,SHANK3,SMC1B,SMDT1,SULT4A1,SYCE3,TBC1D22A,TCF20,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WBP2NL,WNT7B,ZBED4"
TCGA.DM.A1D7	22	42369094	43846528	419	-0.424	NEUTRAL	NA	24	"A4GALT,ARFGAP3,ATP5L2,BIK,CYB5R3,CYP2D6,FAM109B,MCAT,MPPED1,NAGA,NDUFA6,NFAM1,PACSIN2,POLDIP3,RRP7A,SCUBE1,SEPT3,SERHL2,SMDT1,TCF20,TSPO,TTLL1,TTLL12,WBP2NL"
TCGA.AA.A00N.01A	22	42390598	42475746	21	-0.3257	NEUTRAL	NA	5	"FAM109B,NAGA,SEPT3,SMDT1,WBP2NL"
TCGA.AA.A01Q.01A	22	42392837	42609625	36	0.2239	NEUTRAL	NA	8	"CYP2D6,FAM109B,NAGA,NDUFA6,SEPT3,SMDT1,TCF20,WBP2NL"
TCGA.AA.A010.01A	22	42394752	42969893	65	0.2783	NEUTRAL	NA	10	"CYP2D6,FAM109B,NAGA,NDUFA6,NFAM1,RRP7A,SERHL2,SMDT1,TCF20,WBP2NL"
TCGA.AG.3909.01A	22	42415267	42463065	11	0.0537	NEUTRAL	NA	2	"NAGA,WBP2NL"
TCGA.AA.A00N.01A	22	42486561	42575564	12	-0.3999	NEUTRAL	NA	3	"CYP2D6,NDUFA6,TCF20"
TCGA.CK.4952.01A	22	42500084	49570460	717	-0.0981	NEUTRAL	NA	52	"A4GALT,ARFGAP3,ARHGAP8,ATP5L2,ATXN10,BIK,CDPF1,CELSR1,CERK,CYB5R3,CYP2D6,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,KIAA0930,KIAA1644,LDOC1L,MCAT,MPPED1,NFAM1,NUP50,PACSIN2,PARVB,PARVG,PHF21B,PKDREJ,PNPLA3,PNPLA5,POLDIP3,PPARA,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,RRP7A,SAMM50,SCUBE1,SERHL2,SMC1B,SULT4A1,TBC1D22A,TCF20,TRMU,TSPO,TTC38,TTLL1,TTLL12,UPK3A,WNT7B"
TCGA.CI.6624	22	42504678	51186227	3415	-0.4579	NEUTRAL	NA	87	"A4GALT,ACR,ADM2,ALG12,ARFGAP3,ARHGAP8,ARSA,ATP5L2,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,CYB5R3,CYP2D6,DENND6B,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NCAPH2,NFAM1,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,POLDIP3,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,RRP7A,SAMM50,SBF1,SCO2,SCUBE1,SELO,SERHL2,SHANK3,SMC1B,SULT4A1,SYCE3,TBC1D22A,TCF20,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.AG.3909.01A	22	42525709	42951970	29	-0.3042	NEUTRAL	NA	5	"CYP2D6,NFAM1,RRP7A,SERHL2,TCF20"
TCGA.AA.3862.01A	22	42557269	43533036	94	-0.2197	NEUTRAL	NA	13	"A4GALT,ARFGAP3,ATP5L2,BIK,CYB5R3,MCAT,NFAM1,PACSIN2,POLDIP3,RRP7A,SERHL2,TCF20,TTLL1"
TCGA.AA.A00N.01A	22	42605616	42896611	10	0.3745	NEUTRAL	NA	2	"NFAM1,TCF20"
TCGA.D5.6534	22	42640605	43415710	210	0.2221	NEUTRAL	NA	9	"A4GALT,ARFGAP3,ATP5L2,CYB5R3,NFAM1,PACSIN2,POLDIP3,RRP7A,SERHL2"
TCGA.AM.5820	22	42661143	43500211	229	0.0487	NEUTRAL	NA	10	"A4GALT,ARFGAP3,ATP5L2,CYB5R3,NFAM1,PACSIN2,POLDIP3,RRP7A,SERHL2,TTLL1"
TCGA.D5.5539	22	42957287	51186227	3323	-0.1575	NEUTRAL	NA	83	"A4GALT,ACR,ADM2,ALG12,ARFGAP3,ARHGAP8,ARSA,ATP5L2,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,CYB5R3,DENND6B,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NCAPH2,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,POLDIP3,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SBF1,SCO2,SCUBE1,SELO,SERHL2,SHANK3,SMC1B,SULT4A1,SYCE3,TBC1D22A,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.AA.3522	22	42981166	51186227	3318	-0.3786	NEUTRAL	NA	82	"A4GALT,ACR,ADM2,ALG12,ARFGAP3,ARHGAP8,ARSA,ATP5L2,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,CYB5R3,DENND6B,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NCAPH2,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,POLDIP3,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SBF1,SCO2,SCUBE1,SELO,SHANK3,SMC1B,SULT4A1,SYCE3,TBC1D22A,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.AG.3909.01A	22	43010736	43465623	42	-0.1607	NEUTRAL	NA	7	"A4GALT,ARFGAP3,ATP5L2,CYB5R3,PACSIN2,POLDIP3,TTLL1"
TCGA.AA.A00N.01A	22	43010736	43830912	95	-0.2526	NEUTRAL	NA	13	"A4GALT,ARFGAP3,ATP5L2,BIK,CYB5R3,MCAT,MPPED1,PACSIN2,POLDIP3,SCUBE1,TSPO,TTLL1,TTLL12"
TCGA.AA.A010.01A	22	43088929	43206780	6	0.3094	NEUTRAL	NA	2	"A4GALT,ARFGAP3"
TCGA.A6.6648	22	43098265	43533359	136	-0.3873	NEUTRAL	NA	6	"A4GALT,ARFGAP3,BIK,MCAT,PACSIN2,TTLL1"
TCGA.AA.A01Q.01A	22	43195008	43435735	19	-0.0592	NEUTRAL	NA	3	"ARFGAP3,PACSIN2,TTLL1"
TCGA.AA.A010.01A	22	43267314	43558758	33	0.0621	NEUTRAL	NA	5	"BIK,MCAT,PACSIN2,TSPO,TTLL1"
TCGA.D5.6534	22	43424282	51186227	3183	-0.2061	NEUTRAL	NA	76	"ACR,ADM2,ALG12,ARHGAP8,ARSA,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NCAPH2,NUP50,ODF3B,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SBF1,SCO2,SCUBE1,SELO,SHANK3,SMC1B,SULT4A1,SYCE3,TBC1D22A,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.A6.6648	22	43533514	51186227	3149	0.0055	NEUTRAL	NA	74	"ACR,ADM2,ALG12,ARHGAP8,ARSA,ATXN10,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NCAPH2,NUP50,ODF3B,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SBF1,SCO2,SCUBE1,SELO,SHANK3,SMC1B,SULT4A1,SYCE3,TBC1D22A,TRABD,TRMU,TSPO,TTC38,TTLL12,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.AG.3909.01A	22	43563100	44151579	56	-0.12	NEUTRAL	NA	4	"EFCAB6,MPPED1,SCUBE1,TTLL12"
TCGA.AA.A01Q.01A	22	43578949	43634682	17	0.1095	NEUTRAL	NA	2	"SCUBE1,TTLL12"
TCGA.AY.6196	22	43599228	51186227	3082	-0.5119	NEUTRAL	NA	71	"ACR,ADM2,ALG12,ARHGAP8,ARSA,ATXN10,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,MPPED1,NCAPH2,NUP50,ODF3B,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SBF1,SCO2,SCUBE1,SELO,SHANK3,SMC1B,SULT4A1,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.AA.A010.01A	22	43606890	43715902	17	0.2557	NEUTRAL	NA	1	SCUBE1
TCGA.CK.5914.01A	22	43715902	44151579	33	0.0885	NEUTRAL	NA	3	"EFCAB6,MPPED1,SCUBE1"
TCGA.AA.A01Q.01A	22	43715902	44161143	30	0.0852	NEUTRAL	NA	3	"EFCAB6,MPPED1,SCUBE1"
TCGA.AM.5820	22	43718553	44649664	375	0.1886	NEUTRAL	NA	10	"EFCAB6,KIAA1644,MPPED1,PARVB,PARVG,PNPLA3,PNPLA5,SAMM50,SCUBE1,SULT4A1"
TCGA.DM.A1D7	22	43847588	45786738	835	-0.0804	NEUTRAL	NA	19	"ARHGAP8,EFCAB6,FAM118A,KIAA0930,KIAA1644,LDOC1L,MPPED1,NUP50,PARVB,PARVG,PHF21B,PNPLA3,PNPLA5,PRR5,PRR5-ARHGAP8,SAMM50,SMC1B,SULT4A1,UPK3A"
TCGA.A6.3808.01A	22	43933205	45571733	142	0.2038	NEUTRAL	NA	14	"ARHGAP8,EFCAB6,KIAA1644,LDOC1L,NUP50,PARVB,PARVG,PHF21B,PNPLA3,PNPLA5,PRR5,PRR5-ARHGAP8,SAMM50,SULT4A1"
TCGA.AG.A01W.01A	22	43986465	44097714	8	-0.3994	NEUTRAL	NA	1	EFCAB6
TCGA.AA.3941	22	44087774	44102015	8	-0.0174	NEUTRAL	NA	1	EFCAB6
TCGA.AG.A01W.01A	22	44102337	44110815	5	0.3489	NEUTRAL	NA	1	EFCAB6
TCGA.AG.A01W.01A	22	44114875	44187978	25	-0.1717	NEUTRAL	NA	1	EFCAB6
TCGA.AA.A00N.01A	22	44127527	44377225	43	-0.5006	NEUTRAL	NA	5	"EFCAB6,PNPLA3,PNPLA5,SAMM50,SULT4A1"
TCGA.CK.5914.01A	22	44161143	45741313	149	-0.4261	NEUTRAL	NA	18	"ARHGAP8,EFCAB6,FAM118A,KIAA0930,KIAA1644,LDOC1L,NUP50,PARVB,PARVG,PHF21B,PNPLA3,PNPLA5,PRR5,PRR5-ARHGAP8,SAMM50,SMC1B,SULT4A1,UPK3A"
TCGA.AA.A01Q.01A	22	44168751	46644042	182	-0.3882	NEUTRAL	NA	25	"ARHGAP8,ATXN10,CDPF1,EFCAB6,FAM118A,FBLN1,KIAA0930,KIAA1644,LDOC1L,NUP50,PARVB,PARVG,PHF21B,PNPLA3,PNPLA5,PPARA,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SMC1B,SULT4A1,UPK3A,WNT7B"
TCGA.AG.A01W.01A	22	44188447	44315737	15	-0.4768	NEUTRAL	NA	3	"EFCAB6,PNPLA5,SULT4A1"
TCGA.AG.A01W.01A	22	44316649	45238292	108	0.1346	NEUTRAL	NA	9	"ARHGAP8,KIAA1644,LDOC1L,PARVB,PARVG,PNPLA3,PRR5,PRR5-ARHGAP8,SAMM50"
TCGA.AA.A00D.01A	22	44379745	45316223	55	0.3124	NEUTRAL	NA	9	"ARHGAP8,KIAA1644,LDOC1L,PARVB,PARVG,PHF21B,PRR5,PRR5-ARHGAP8,SAMM50"
TCGA.AG.3909.01A	22	44379745	45316223	66	-0.202	NEUTRAL	NA	9	"ARHGAP8,KIAA1644,LDOC1L,PARVB,PARVG,PHF21B,PRR5,PRR5-ARHGAP8,SAMM50"
TCGA.AA.A00N.01A	22	44587867	45182286	27	-0.1145	NEUTRAL	NA	6	"ARHGAP8,KIAA1644,LDOC1L,PARVG,PRR5,PRR5-ARHGAP8"
TCGA.AA.3862.01A	22	44601577	45802304	100	-0.4182	NEUTRAL	NA	12	"ARHGAP8,FAM118A,KIAA0930,KIAA1644,LDOC1L,NUP50,PARVG,PHF21B,PRR5,PRR5-ARHGAP8,SMC1B,UPK3A"
TCGA.AA.A010.01A	22	44692515	45126655	14	-0.4561	NEUTRAL	NA	4	"KIAA1644,LDOC1L,PRR5,PRR5-ARHGAP8"
TCGA.5M.AAT4	22	44804191	46482947	623	-0.0023	NEUTRAL	NA	15	"ARHGAP8,ATXN10,FAM118A,FBLN1,KIAA0930,LDOC1L,NUP50,PHF21B,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SMC1B,UPK3A,WNT7B"
TCGA.AM.5820	22	44902758	44929805	16	-0.1606	NEUTRAL	NA	0	None
TCGA.AM.5820	22	45146424	45253894	55	0.2352	NEUTRAL	NA	2	"ARHGAP8,PRR5-ARHGAP8"
TCGA.AA.A00N.01A	22	45221316	45283802	10	0.3179	NEUTRAL	NA	3	"ARHGAP8,PHF21B,PRR5-ARHGAP8"
TCGA.AA.A00N.01A	22	45285550	45404362	8	-0.4363	NEUTRAL	NA	1	PHF21B
TCGA.AM.5820	22	45409135	46480601	347	0.129	NEUTRAL	NA	10	"ATXN10,FAM118A,FBLN1,KIAA0930,NUP50,PRR34,RIBC2,SMC1B,UPK3A,WNT7B"
TCGA.AG.A01W.01A	22	45461635	48683454	49	0.0672	NEUTRAL	NA	20	"ATXN10,CDPF1,CELSR1,CERK,FAM118A,FBLN1,GRAMD4,GTSE1,KIAA0930,NUP50,PKDREJ,PPARA,PRR34,RIBC2,SMC1B,TBC1D22A,TRMU,TTC38,UPK3A,WNT7B"
TCGA.AA.A00N.01A	22	45592976	45717980	18	-0.4905	NEUTRAL	NA	3	"FAM118A,KIAA0930,UPK3A"
TCGA.A6.3808.01A	22	45592976	45810157	52	0.1859	NEUTRAL	NA	5	"FAM118A,KIAA0930,RIBC2,SMC1B,UPK3A"
TCGA.AG.3909.01A	22	45595726	46644042	95	-0.3215	NEUTRAL	NA	11	"ATXN10,CDPF1,FAM118A,FBLN1,KIAA0930,PPARA,PRR34,RIBC2,SMC1B,UPK3A,WNT7B"
TCGA.AA.A010.01A	22	45717980	45826749	39	0.0777	NEUTRAL	NA	3	"FAM118A,RIBC2,SMC1B"
TCGA.AA.A00N.01A	22	45719029	45790530	26	0.2769	NEUTRAL	NA	2	"FAM118A,SMC1B"
TCGA.CK.5914.01A	22	45745552	45785565	14	0.3184	NEUTRAL	NA	1	SMC1B
TCGA.DM.A1D7	22	45794211	51186227	2198	-0.4689	NEUTRAL	NA	52	"ACR,ADM2,ALG12,ARSA,ATXN10,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,PRR34,RIBC2,SBF1,SCO2,SELO,SHANK3,SMC1B,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,WNT7B,ZBED4"
TCGA.AG.4009.01A	22	45828142	46642961	43	-0.0068	NEUTRAL	NA	7	"ATXN10,CDPF1,FBLN1,PPARA,PRR34,RIBC2,WNT7B"
TCGA.A6.3808.01A	22	45898067	46345773	41	0.102	NEUTRAL	NA	3	"ATXN10,FBLN1,WNT7B"
TCGA.AA.3861.01A	22	45898067	50854454	327	-0.4868	NEUTRAL	NA	34	"ALG12,ATXN10,BRD1,C22orf34,CDPF1,CELSR1,CERK,CRELD2,DENND6B,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,MAPK11,MAPK12,MLC1,MOV10L1,PANX2,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,PRR34,SELO,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,WNT7B,ZBED4"
TCGA.AA.3862.01A	22	45898067	50854454	347	-0.4948	NEUTRAL	NA	34	"ALG12,ATXN10,BRD1,C22orf34,CDPF1,CELSR1,CERK,CRELD2,DENND6B,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,MAPK11,MAPK12,MLC1,MOV10L1,PANX2,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,PRR34,SELO,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,WNT7B,ZBED4"
TCGA.AA.A00N.01A	22	45913425	46218970	34	0.1096	NEUTRAL	NA	2	"ATXN10,FBLN1"
TCGA.AA.A010.01A	22	45928905	46326927	33	0.0681	NEUTRAL	NA	3	"ATXN10,FBLN1,WNT7B"
TCGA.AA.3941	22	46114397	46207700	37	0.3777	NEUTRAL	NA	1	ATXN10
TCGA.DM.A285	22	46423124	51186227	2018	-0.1697	NEUTRAL	NA	47	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,GTSE1,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,PRR34,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,ZBED4"
TCGA.AA.A010.01A	22	46449598	46630979	15	-0.4151	NEUTRAL	NA	2	"PPARA,PRR34"
TCGA.QG.A5Z1	22	46480601	51186227	1997	-0.0913	NEUTRAL	NA	46	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,GTSE1,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,ZBED4"
TCGA.5M.AAT4	22	46487215	51186227	2003	-0.3423	NEUTRAL	NA	46	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,GTSE1,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,ZBED4"
TCGA.AM.5820	22	46548599	46630633	23	-0.088	NEUTRAL	NA	1	PPARA
TCGA.EI.6508	22	46561273	51186227	1985	-0.1303	NEUTRAL	NA	46	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,GTSE1,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,ZBED4"
TCGA.AA.A01Q.01A	22	46657826	50870649	237	-0.2372	NEUTRAL	NA	28	"ALG12,BRD1,C22orf34,CELSR1,CERK,CRELD2,DENND6B,FAM19A5,GRAMD4,GTSE1,HDAC10,IL17REL,MAPK11,MAPK12,MLC1,MOV10L1,PANX2,PIM3,PKDREJ,PLXNB2,PPP6R2,SELO,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,ZBED4"
TCGA.AF.3914.01A	22	46664349	50693579	213	-0.1379	NEUTRAL	NA	23	"ALG12,BRD1,C22orf34,CELSR1,CERK,CRELD2,FAM19A5,GRAMD4,GTSE1,HDAC10,IL17REL,MAPK12,MLC1,MOV10L1,PANX2,PIM3,SELO,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,ZBED4"
TCGA.AG.3906.01A	22	46674449	50320829	123	-0.2484	NEUTRAL	NA	13	"ALG12,BRD1,C22orf34,CELSR1,CERK,CRELD2,FAM19A5,GRAMD4,GTSE1,TBC1D22A,TRMU,TTC38,ZBED4"
TCGA.AG.4009.01A	22	46677448	50192599	100	-0.0495	NEUTRAL	NA	10	"BRD1,C22orf34,CELSR1,CERK,FAM19A5,GRAMD4,GTSE1,TBC1D22A,TRMU,TTC38"
TCGA.AA.A010.01A	22	46682912	47882425	109	0.1163	NEUTRAL	NA	7	"CELSR1,CERK,GRAMD4,GTSE1,TBC1D22A,TRMU,TTC38"
TCGA.AG.3909.01A	22	46751304	47070500	42	-0.2699	NEUTRAL	NA	3	"CELSR1,GRAMD4,TRMU"
TCGA.G4.6298	22	46860062	51186227	1895	-0.0016	NEUTRAL	NA	40	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AM.5820	22	47078559	47518830	214	0.2804	NEUTRAL	NA	2	"CERK,TBC1D22A"
TCGA.AA.3844	22	47114662	51186227	1794	0.106	NEUTRAL	NA	38	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3979	22	47114662	51186227	1793	-0.1177	NEUTRAL	NA	38	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AG.3909.01A	22	47189366	47507351	11	-0.3535	NEUTRAL	NA	1	TBC1D22A
TCGA.AM.5820	22	47574087	47766218	89	0.2066	NEUTRAL	NA	0	None
TCGA.AM.5820	22	47780844	48873384	627	0.1822	NEUTRAL	NA	0	None
TCGA.AH.6897	22	47814552	51186227	1465	0.2604	NEUTRAL	NA	36	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3495	22	48521168	49586867	610	0.0438	NEUTRAL	NA	1	FAM19A5
TCGA.EI.7002	22	48667160	51186227	999	-0.0784	NEUTRAL	NA	36	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.D5.6926	22	48760124	51186227	935	-0.0957	NEUTRAL	NA	36	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AG.A01W.01A	22	48821690	48941876	46	0.0102	NEUTRAL	NA	1	FAM19A5
TCGA.AA.3667	22	48838814	51186227	879	-0.0502	NEUTRAL	NA	36	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3877	22	48843194	51186227	869	-0.0807	NEUTRAL	NA	36	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3684	22	48845503	51186227	869	-0.0196	NEUTRAL	NA	36	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AG.3594	22	48966342	51186227	810	-0.1029	NEUTRAL	NA	36	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.A010.01A	22	49042367	50192599	21	-0.0359	NEUTRAL	NA	3	"BRD1,C22orf34,FAM19A5"
TCGA.AM.5820	22	49163472	49171020	5	-0.2491	NEUTRAL	NA	0	None
TCGA.AM.5820	22	49171397	49851211	413	0.2929	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	22	49412802	49567435	28	-0.2385	NEUTRAL	NA	0	None
TCGA.AA.3549	22	49414225	51186227	603	-0.2025	NEUTRAL	NA	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AD.6890	22	49541532	51186227	503	-0.0665	NEUTRAL	NA	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.CA.5797	22	49605796	51186227	457	-0.2164	NEUTRAL	NA	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3941	22	49710324	49714780	5	-0.2932	NEUTRAL	NA	0	None
TCGA.CA.5796	22	49827659	51186227	306	0.1057	NEUTRAL	NA	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AM.5820	22	49856120	49909890	17	-0.2548	NEUTRAL	NA	0	None
TCGA.AA.3693	22	49873495	51186227	292	-0.0201	NEUTRAL	NA	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3858	22	49873495	51186227	292	-0.0363	NEUTRAL	NA	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3971	22	49873495	51186227	291	0.0467	NEUTRAL	NA	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AG.3909.01A	22	50192599	51220568	221	-0.3174	NEUTRAL	NA	35	"ACR,ADM2,ALG12,ARSA,BRD1,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,RABL2B,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AG.4009.01A	22	50197841	50942199	164	-0.4436	NEUTRAL	NA	22	"ADM2,ALG12,BRD1,CRELD2,DENND6B,HDAC10,IL17REL,LMF2,MAPK11,MAPK12,MIOX,MLC1,MOV10L1,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SELO,TRABD,TUBGCP6,ZBED4"
TCGA.AA.3848	22	50237594	51186227	155	-0.2542	NEUTRAL	NA	33	"ACR,ADM2,ALG12,ARSA,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AG.3906.01A	22	50356300	50512608	13	0.1439	NEUTRAL	NA	3	"IL17REL,MLC1,PIM3"
TCGA.AG.3906.01A	22	50546513	50894626	90	0.0086	NEUTRAL	NA	12	"DENND6B,HDAC10,MAPK11,MAPK12,MOV10L1,PANX2,PLXNB2,PPP6R2,SBF1,SELO,TRABD,TUBGCP6"
TCGA.AA.3509.01A	22	50581420	51223594	247	-0.1374	NEUTRAL	NA	28	"ACR,ADM2,ARSA,CHKB,CPT1B,DENND6B,HDAC10,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MOV10L1,NCAPH2,ODF3B,PANX2,PLXNB2,PPP6R2,RABL2B,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP"
TCGA.AA.A00L.01A	22	50599756	50704918	41	0.1566	NEUTRAL	NA	8	"HDAC10,MAPK11,MAPK12,MOV10L1,PANX2,SELO,TRABD,TUBGCP6"
TCGA.AA.A010.01A	22	50832310	50886675	22	-0.211	NEUTRAL	NA	2	"PPP6R2,SBF1"
TCGA.AF.3914.01A	22	50832310	50894626	21	-0.2135	NEUTRAL	NA	2	"PPP6R2,SBF1"
TCGA.AA.A00L.01A	22	50869595	51220568	68	0.1212	NEUTRAL	NA	18	"ACR,ADM2,ARSA,CHKB,CPT1B,KLHDC7B,LMF2,MAPK8IP2,MIOX,NCAPH2,ODF3B,PPP6R2,RABL2B,SBF1,SCO2,SHANK3,SYCE3,TYMP"
TCGA.AA.A01Q.01A	22	50885529	51216317	79	-0.0301	NEUTRAL	NA	17	"ACR,ADM2,ARSA,CHKB,CPT1B,KLHDC7B,LMF2,MAPK8IP2,MIOX,NCAPH2,ODF3B,RABL2B,SBF1,SCO2,SHANK3,SYCE3,TYMP"
TCGA.AA.3862.01A	22	50905747	51223594	90	-0.3522	NEUTRAL	NA	17	"ACR,ADM2,ARSA,CHKB,CPT1B,KLHDC7B,LMF2,MAPK8IP2,MIOX,NCAPH2,ODF3B,RABL2B,SBF1,SCO2,SHANK3,SYCE3,TYMP"
TCGA.AG.A015.01A	22	50906750	51183070	50	-0.0864	NEUTRAL	NA	16	"ACR,ADM2,ARSA,CHKB,CPT1B,KLHDC7B,LMF2,MAPK8IP2,MIOX,NCAPH2,ODF3B,SBF1,SCO2,SHANK3,SYCE3,TYMP"
TCGA.AA.3861.01A	22	50906750	51223594	83	-0.4928	NEUTRAL	NA	17	"ACR,ADM2,ARSA,CHKB,CPT1B,KLHDC7B,LMF2,MAPK8IP2,MIOX,NCAPH2,ODF3B,RABL2B,SBF1,SCO2,SHANK3,SYCE3,TYMP"
TCGA.AZ.4308	22	50961535	51186227	43	-0.059	NEUTRAL	NA	12	"ACR,ARSA,CHKB,CPT1B,KLHDC7B,MAPK8IP2,NCAPH2,ODF3B,SCO2,SHANK3,SYCE3,TYMP"
TCGA.AA.A024.01A	22	50967538	51220568	52	0.2191	NEUTRAL	NA	11	"ACR,ARSA,CHKB,CPT1B,KLHDC7B,MAPK8IP2,ODF3B,RABL2B,SHANK3,SYCE3,TYMP"
TCGA.AG.A00Y.01A	22	51015299	51207154	27	-0.2167	NEUTRAL	NA	7	"ACR,ARSA,CHKB,CPT1B,MAPK8IP2,RABL2B,SHANK3"
TCGA.AA.A02J.01A	22	51018118	51220568	24	-0.4891	NEUTRAL	NA	6	"ACR,ARSA,CHKB,MAPK8IP2,RABL2B,SHANK3"
TCGA.AG.4009.01A	22	51041544	51220568	28	-0.422	NEUTRAL	NA	5	"ACR,ARSA,MAPK8IP2,RABL2B,SHANK3"
TCGA.AG.3906.01A	22	51178175	51220568	11	0.1727	NEUTRAL	NA	2	"ACR,RABL2B"
TCGA.AF.3914.01A	22	51182437	51220568	11	-0.0761	NEUTRAL	NA	2	"ACR,RABL2B"
TCGA.AA.A00D.01A	22	51207154	51220568	7	-0.1197	NEUTRAL	NA	1	RABL2B
TCGA.AA.3930.01A	23	200803	223987	8	0.1719	NEUTRAL	NA	2	"GTPBP6,PLCXD1"
TCGA.A6.3810.01A	23	200803	230774	12	-0.4341	NEUTRAL	NA	2	"GTPBP6,PLCXD1"
TCGA.A6.3808.01A	23	200803	295053	13	-0.2932	NEUTRAL	NA	3	"GTPBP6,PLCXD1,PPP2R3B"
TCGA.AA.3939.01A	23	200803	299287	13	-0.1262	NEUTRAL	NA	3	"GTPBP6,PLCXD1,PPP2R3B"
TCGA.AA.3980.01A	23	200803	307922	19	-0.4116	NEUTRAL	NA	3	"GTPBP6,PLCXD1,PPP2R3B"
TCGA.AG.3891.01A	23	200803	307922	15	-0.5026	NEUTRAL	NA	3	"GTPBP6,PLCXD1,PPP2R3B"
TCGA.AG.3611.01A	23	200803	605109	11	0.1734	NEUTRAL	NA	4	"GTPBP6,PLCXD1,PPP2R3B,SHOX"
TCGA.AA.3509.01A	23	200803	1401538	35	0.2675	NEUTRAL	NA	6	"CRLF2,CSF2RA,GTPBP6,PLCXD1,PPP2R3B,SHOX"
TCGA.AG.A02G.01A	23	200803	1531593	43	-0.0413	NEUTRAL	NA	9	"ASMTL,CRLF2,CSF2RA,GTPBP6,IL3RA,PLCXD1,PPP2R3B,SHOX,SLC25A6"
TCGA.AG.A01N.01A	23	200803	1551122	48	0.2871	NEUTRAL	NA	9	"ASMTL,CRLF2,CSF2RA,GTPBP6,IL3RA,PLCXD1,PPP2R3B,SHOX,SLC25A6"
TCGA.AG.4009.01A	23	200803	1719532	61	-0.4101	NEUTRAL	NA	12	"AKAP17A,ASMT,ASMTL,CRLF2,CSF2RA,GTPBP6,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6"
TCGA.AA.3967.01A	23	200803	2609822	89	0.0813	NEUTRAL	NA	15	"AKAP17A,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6,ZBED1"
TCGA.AG.3909.01A	23	200803	2651360	90	-0.3089	NEUTRAL	NA	15	"AKAP17A,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6,ZBED1"
TCGA.AG.A014.01A	23	200803	2712523	88	0.1846	NEUTRAL	NA	16	"AKAP17A,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6,XG,ZBED1"
TCGA.AG.A00C.01A	23	200803	2828671	109	0.282	NEUTRAL	NA	18	"AKAP17A,ARSD,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,GYG2,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6,XG,ZBED1"
TCGA.AA.A01Q.01A	23	200803	2878374	109	0.077	NEUTRAL	NA	19	"AKAP17A,ARSD,ARSE,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,GYG2,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6,XG,ZBED1"
TCGA.AA.A01I.01A	23	200803	2932983	125	-0.0263	NEUTRAL	NA	20	"AKAP17A,ARSD,ARSE,ARSH,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,GYG2,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6,XG,ZBED1"
TCGA.AH.6549.01A	23	200803	6451735	192	0.2796	NEUTRAL	NA	25	"AKAP17A,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,GYG2,IL3RA,MXRA5,NLGN4X,P2RY8,PLCXD1,PPP2R3B,PRKX,SHOX,SLC25A6,VCX3A,XG,ZBED1"
TCGA.AA.A017.01A	23	200803	9656020	208	-0.1188	NEUTRAL	NA	35	"AKAP17A,ANOS1,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,FAM9A,FAM9B,GTPBP6,GYG2,HDHD1,IL3RA,MXRA5,NLGN4X,P2RY8,PLCXD1,PNPLA4,PPP2R3B,PRKX,SHOX,SLC25A6,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,XG,ZBED1"
TCGA.AA.A02E.01A	23	200803	9656020	207	-0.3508	NEUTRAL	NA	35	"AKAP17A,ANOS1,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,FAM9A,FAM9B,GTPBP6,GYG2,HDHD1,IL3RA,MXRA5,NLGN4X,P2RY8,PLCXD1,PNPLA4,PPP2R3B,PRKX,SHOX,SLC25A6,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,XG,ZBED1"
TCGA.AA.A024.01A	23	200803	10077766	253	0.0282	NEUTRAL	NA	39	"AKAP17A,ANOS1,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CLDN34,CRLF2,CSF2RA,DHRSX,FAM9A,FAM9B,GPR143,GTPBP6,GYG2,HDHD1,IL3RA,MXRA5,NLGN4X,P2RY8,PLCXD1,PNPLA4,PPP2R3B,PRKX,SHOX,SHROOM2,SLC25A6,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1"
TCGA.AG.3906.01A	23	200803	11682324	311	-0.0674	NEUTRAL	NA	44	"AKAP17A,AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CLCN4,CLDN34,CRLF2,CSF2RA,DHRSX,FAM9A,FAM9B,GPR143,GTPBP6,GYG2,HCCS,HDHD1,IL3RA,MID1,MXRA5,NLGN4X,P2RY8,PLCXD1,PNPLA4,PPP2R3B,PRKX,SHOX,SHROOM2,SLC25A6,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1"
TCGA.CK.4948.01B	23	200803	13060981	401	-0.0394	NEUTRAL	NA	51	"AKAP17A,AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CLCN4,CLDN34,CRLF2,CSF2RA,DHRSX,FAM9A,FAM9B,FAM9C,FRMPD4,GPR143,GTPBP6,GYG2,HCCS,HDHD1,IL3RA,MID1,MSL3,MXRA5,NLGN4X,P2RY8,PLCXD1,PNPLA4,PPP2R3B,PRKX,PRPS2,SHOX,SHROOM2,SLC25A6,STS,TBL1X,TLR7,TLR8,TMSB4X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1"
TCGA.AA.A01C.01A	23	200803	18915243	685	0.3128	NEUTRAL	NA	90	"ACE2,AKAP17A,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ASMT,ASMTL,ATXN3L,BEND2,BMX,CA5B,CD99,CDKL5,CLCN4,CLDN34,CRLF2,CSF2RA,CTPS2,DHRSX,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GTPBP6,GYG2,HCCS,HDHD1,IL3RA,MAGEB17,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,P2RY8,PHKA2,PIGA,PIR,PLCXD1,PNPLA4,PPEF1,PPP2R3B,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SHOX,SHROOM2,SLC25A6,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1,ZRSR2"
TCGA.AA.A02H.01A	23	200803	18915243	690	0.2831	NEUTRAL	NA	90	"ACE2,AKAP17A,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ASMT,ASMTL,ATXN3L,BEND2,BMX,CA5B,CD99,CDKL5,CLCN4,CLDN34,CRLF2,CSF2RA,CTPS2,DHRSX,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GTPBP6,GYG2,HCCS,HDHD1,IL3RA,MAGEB17,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,P2RY8,PHKA2,PIGA,PIR,PLCXD1,PNPLA4,PPEF1,PPP2R3B,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SHOX,SHROOM2,SLC25A6,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1,ZRSR2"
TCGA.AA.A02R.01A	23	200803	19387133	750	-0.0742	NEUTRAL	NA	93	"ACE2,ADGRG2,AKAP17A,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ASMT,ASMTL,ATXN3L,BEND2,BMX,CA5B,CD99,CDKL5,CLCN4,CLDN34,CRLF2,CSF2RA,CTPS2,DHRSX,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GTPBP6,GYG2,HCCS,HDHD1,IL3RA,MAGEB17,MAP3K15,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,P2RY8,PDHA1,PHKA2,PIGA,PIR,PLCXD1,PNPLA4,PPEF1,PPP2R3B,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SHOX,SHROOM2,SLC25A6,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1,ZRSR2"
TCGA.AG.A01J.01A	23	200803	23721955	941	0.2146	NEUTRAL	NA	110	Too-Many
TCGA.AG.A00Y.01A	23	200803	30877565	1107	0.1749	NEUTRAL	NA	137	Too-Many
TCGA.AG.A015.01A	23	200803	38145770	1290	-0.1053	NEUTRAL	NA	155	Too-Many
TCGA.AA.A004.01A	23	200803	39916356	1272	-0.1043	NEUTRAL	NA	159	Too-Many
TCGA.AA.A02J.01A	23	200803	47045434	1581	-0.0594	NEUTRAL	NA	187	Too-Many
TCGA.AG.A01L.01A	23	200803	48370200	1730	0.128	NEUTRAL	NA	211	Too-Many
TCGA.AF.3914.01A	23	200803	49021489	1900	0.159	NEUTRAL	NA	235	Too-Many
TCGA.AG.A025.01A	23	200803	69489873	2660	-0.1094	NEUTRAL	NA	356	Too-Many
TCGA.AG.A016.01A	23	200803	69495925	2582	-0.1873	NEUTRAL	NA	356	Too-Many
TCGA.AG.A02X.01A	23	200803	69615752	2638	-0.331	NEUTRAL	NA	359	Too-Many
TCGA.DM.A28M.01A	23	200803	80064743	3420	0.2054	NEUTRAL	NA	422	Too-Many
TCGA.CM.4750.01A	23	200803	101439755	3840	0.0254	NEUTRAL	NA	473	Too-Many
TCGA.AG.A008.01A	23	200803	104512022	3724	0.1325	NEUTRAL	NA	510	Too-Many
TCGA.CM.6165.01A	23	200803	107097810	4099	0.0942	NEUTRAL	NA	526	Too-Many
TCGA.AA.3815.01A	23	200803	107807033	4139	0.0391	NEUTRAL	NA	532	Too-Many
TCGA.AA.A029.01A	23	200803	129267239	4498	-0.1445	NEUTRAL	NA	625	Too-Many
TCGA.AG.A023.01A	23	200803	152034322	5345	0.2595	NEUTRAL	NA	749	Too-Many
TCGA.AA.A00O.01A	23	200803	153197769	5448	0.0103	NEUTRAL	NA	775	Too-Many
TCGA.AA.A01K.01A	23	200803	153590310	5513	0.0937	NEUTRAL	NA	786	Too-Many
TCGA.AA.A01D.01A	23	200803	155239443	5617	-0.0918	NEUTRAL	NA	825	Too-Many
TCGA.AA.A02W.01A	23	200803	155239443	5754	0.013	NEUTRAL	NA	825	Too-Many
TCGA.AG.A00H.01A	23	200803	155239443	5564	0.0682	NEUTRAL	NA	825	Too-Many
TCGA.AG.A011.01A	23	200803	155239443	5623	-0.109	NEUTRAL	NA	825	Too-Many
TCGA.CM.4744.01A	23	200803	155254944	6226	0.2122	NEUTRAL	NA	825	Too-Many
TCGA.AA.3939.01A	23	306851	2656020	89	0.0703	NEUTRAL	NA	13	"AKAP17A,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,IL3RA,P2RY8,PPP2R3B,SHOX,SLC25A6,ZBED1"
TCGA.AA.3980.01A	23	308288	8699833	209	0.1152	NEUTRAL	NA	30	"AKAP17A,ANOS1,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GYG2,HDHD1,IL3RA,MXRA5,NLGN4X,P2RY8,PNPLA4,PPP2R3B,PRKX,SHOX,SLC25A6,STS,VCX,VCX2,VCX3A,VCX3B,XG,ZBED1"
TCGA.AG.3891.01A	23	322089	1506155	30	-0.032	NEUTRAL	NA	6	"CRLF2,CSF2RA,IL3RA,PPP2R3B,SHOX,SLC25A6"
TCGA.AA.3930.01A	23	347073	1467287	24	-0.058	NEUTRAL	NA	5	"CRLF2,CSF2RA,IL3RA,PPP2R3B,SHOX"
TCGA.AA.A010.01A	23	591626	1428286	19	-0.3916	NEUTRAL	NA	3	"CRLF2,CSF2RA,SHOX"
TCGA.AA.A00N.01A	23	1317372	1460601	16	0.2413	NEUTRAL	NA	3	"CRLF2,CSF2RA,IL3RA"
TCGA.AA.3509.01A	23	1404639	1483988	16	-0.2709	NEUTRAL	NA	2	"CSF2RA,IL3RA"
TCGA.AA.3509.01A	23	1497524	2609822	45	0.2767	NEUTRAL	NA	9	"AKAP17A,ASMT,ASMTL,CD99,DHRSX,IL3RA,P2RY8,SLC25A6,ZBED1"
TCGA.A6.3810.01A	23	1506155	2688515	55	-0.4182	NEUTRAL	NA	9	"AKAP17A,ASMT,ASMTL,CD99,DHRSX,P2RY8,SLC25A6,XG,ZBED1"
TCGA.AG.3891.01A	23	1508142	1719532	19	-0.4991	NEUTRAL	NA	5	"AKAP17A,ASMT,ASMTL,P2RY8,SLC25A6"
TCGA.AA.3930.01A	23	1522124	8759289	168	0.0911	NEUTRAL	NA	25	"AKAP17A,ANOS1,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,DHRSX,FAM9A,GYG2,HDHD1,MXRA5,NLGN4X,P2RY8,PNPLA4,PRKX,STS,VCX,VCX2,VCX3A,VCX3B,XG,ZBED1"
TCGA.AA.A010.01A	23	1546677	11682324	282	-0.2088	NEUTRAL	NA	36	"AKAP17A,AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CLCN4,CLDN34,DHRSX,FAM9A,FAM9B,GPR143,GYG2,HCCS,HDHD1,MID1,MXRA5,NLGN4X,P2RY8,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1"
TCGA.AG.4009.01A	23	1742010	2670258	29	-0.008	NEUTRAL	NA	5	"ASMT,CD99,DHRSX,XG,ZBED1"
TCGA.AA.A00N.01A	23	1742010	2827809	54	0.2908	NEUTRAL	NA	7	"ARSD,ASMT,CD99,DHRSX,GYG2,XG,ZBED1"
TCGA.AG.3891.01A	23	1742010	23701709	889	-0.0344	NEUTRAL	NA	98	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ASMT,ATXN3L,BEND2,BMX,CA5B,CD99,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,DDX53,DHRSX,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRDX4,PRKX,PRPS2,PTCHD1,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,YY2,ZBED1,ZNF645,ZRSR2"
TCGA.AA.A00J.01A	23	1743161	68840668	2396	0.0664	NEUTRAL	NA	338	Too-Many
TCGA.CK.5914.01A	23	1748665	2732362	36	-0.2265	NEUTRAL	NA	5	"ASMT,CD99,DHRSX,XG,ZBED1"
TCGA.A6.3808.01A	23	2406647	19390730	728	-0.4083	NEUTRAL	NA	81	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CD99,CDKL5,CLCN4,CLDN34,CTPS2,DHRSX,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MAP3K15,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1,ZRSR2"
TCGA.AA.3509.01A	23	2632418	2651360	9	-0.2707	NEUTRAL	NA	1	CD99
TCGA.AG.3909.01A	23	2656020	2799074	22	0.1545	NEUTRAL	NA	3	"CD99,GYG2,XG"
TCGA.A6.3810.01A	23	2692667	7177340	95	0.3675	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.AG.3611.01A	23	2700042	10092243	158	0.1367	NEUTRAL	NA	24	"ANOS1,ARSD,ARSE,ARSF,ARSH,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HDHD1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.D5.6929	23	2703632	2713138	9	-0.2384	NEUTRAL	NA	1	XG
TCGA.AA.3660	23	2703632	2716345	13	0.2926	NEUTRAL	NA	1	XG
TCGA.A6.A567	23	2703632	2778344	43	-0.3109	NEUTRAL	NA	2	"GYG2,XG"
TCGA.AA.3968	23	2703632	3294512	263	0.1342	NEUTRAL	NA	7	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,XG"
TCGA.G4.6314	23	2703632	3681200	396	0.2713	NEUTRAL	NA	8	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,PRKX,XG"
TCGA.AA.3866	23	2703632	3969617	418	-0.1049	NEUTRAL	NA	8	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,PRKX,XG"
TCGA.AA.A03J	23	2703632	4230631	567	0.2802	NEUTRAL	NA	8	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,PRKX,XG"
TCGA.DM.A1D8	23	2703632	6590760	1554	0.3133	NEUTRAL	NA	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.A6.6648	23	2703632	6682243	1562	0.3175	NEUTRAL	NA	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AA.3666	23	2703632	6847384	1635	0.3552	NEUTRAL	NA	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AY.A69D	23	2703632	6873477	1611	-0.0443	NEUTRAL	NA	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.A6.2681	23	2703632	6897848	1661	0.1315	NEUTRAL	NA	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AZ.4681	23	2703632	6897848	1660	0.0111	NEUTRAL	NA	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AA.3693	23	2703632	6912488	1667	-0.0697	NEUTRAL	NA	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.A6.2683	23	2703632	6962964	1672	0.2489	NEUTRAL	NA	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AA.3529	23	2703632	7002836	1706	0.0018	NEUTRAL	NA	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.F5.6464	23	2703632	7002836	1708	0.2823	NEUTRAL	NA	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.A6.6653	23	2703632	7014766	1693	0.0226	NEUTRAL	NA	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.EI.6508	23	2703632	7044080	1722	-0.005	NEUTRAL	NA	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.NH.A6GB	23	2703632	7099977	1695	0.0535	NEUTRAL	NA	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AM.5821	23	2703632	7103205	1735	-0.2209	NEUTRAL	NA	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AG.3726	23	2703632	7108849	1742	0.1074	NEUTRAL	NA	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.G4.6303	23	2703632	7119664	1745	0.0303	NEUTRAL	NA	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AA.3489	23	2703632	7214804	1740	0.1096	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.G4.6588	23	2703632	7266198	1774	0.0424	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.AY.6196	23	2703632	7290561	1720	-0.0685	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.AZ.4308	23	2703632	7307439	1784	-0.0225	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.A6.2686	23	2703632	7366881	1806	-0.3527	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.F4.6460	23	2703632	7484728	1841	-0.2468	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.A6.2674	23	2703632	7559490	1829	0.038	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.AF.A56L	23	2703632	7561176	1853	-0.0159	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.AZ.4615	23	2703632	7795955	1919	-0.2244	NEUTRAL	NA	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.A6.6138	23	2703632	7890945	1981	0.0733	NEUTRAL	NA	14	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PNPLA4,PRKX,STS,VCX,VCX3A,XG"
TCGA.A6.6652	23	2703632	9640617	2605	0.0701	NEUTRAL	NA	20	"ANOS1,ARSD,ARSE,ARSF,ARSH,FAM9A,FAM9B,GYG2,HDHD1,MXRA5,NLGN4X,PNPLA4,PRKX,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,XG"
TCGA.AF.2693	23	2703632	10083106	2810	-0.0795	NEUTRAL	NA	24	"ANOS1,ARSD,ARSE,ARSF,ARSH,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HDHD1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.DM.A1D9	23	2703632	10571221	3014	-0.0127	NEUTRAL	NA	26	"ANOS1,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HDHD1,MID1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.F5.6465	23	2703632	10730450	3048	0.0002	NEUTRAL	NA	26	"ANOS1,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HDHD1,MID1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.D5.6923	23	2703632	11456233	3115	0.2698	NEUTRAL	NA	29	"AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HCCS,HDHD1,MID1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.AA.3494	23	2703632	12939945	3809	0.3423	NEUTRAL	NA	34	"AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,FRMPD4,GPR143,GYG2,HCCS,HDHD1,MID1,MSL3,MXRA5,NLGN4X,PNPLA4,PRKX,PRPS2,SHROOM2,STS,TBL1X,TLR7,TLR8,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.CM.6170	23	2703632	13050303	3892	0.0436	NEUTRAL	NA	35	"AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,FRMPD4,GPR143,GYG2,HCCS,HDHD1,MID1,MSL3,MXRA5,NLGN4X,PNPLA4,PRKX,PRPS2,SHROOM2,STS,TBL1X,TLR7,TLR8,TMSB4X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.D5.6539	23	2703632	13714061	4129	-0.1532	NEUTRAL	NA	40	"AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ATXN3L,CLCN4,CLDN34,EGFL6,FAM9A,FAM9B,FAM9C,FRMPD4,GPR143,GYG2,HCCS,HDHD1,MID1,MSL3,MXRA5,NLGN4X,PNPLA4,PRKX,PRPS2,RAB9A,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMSB4X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.CM.6172	23	2703632	15524446	4705	0.051	NEUTRAL	NA	53	"AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BMX,CLCN4,CLDN34,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GYG2,HCCS,HDHD1,MID1,MOSPD2,MSL3,MXRA5,NLGN4X,OFD1,PIGA,PIR,PNPLA4,PRKX,PRPS2,RAB9A,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMSB4X,TRAPPC2,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.AG.3732	23	2703632	15919371	4774	-0.4525	NEUTRAL	NA	58	"ACE2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BMX,CA5B,CLCN4,CLDN34,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GYG2,HCCS,HDHD1,MID1,MOSPD2,MSL3,MXRA5,NLGN4X,OFD1,PIGA,PIR,PNPLA4,PRKX,PRPS2,RAB9A,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.AF.2689	23	2703632	16695502	4984	0.2519	NEUTRAL	NA	62	"ACE2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BMX,CA5B,CLCN4,CLDN34,CTPS2,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MID1,MOSPD2,MSL3,MXRA5,NLGN4X,OFD1,PIGA,PIR,PNPLA4,PRKX,PRPS2,RAB9A,S100G,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.AG.3612	23	2703632	17838619	5185	-0.0333	NEUTRAL	NA	69	"ACE2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BMX,CA5B,CLCN4,CLDN34,CTPS2,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PIGA,PIR,PNPLA4,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,S100G,SCML1,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.A6.2678	23	2703632	17917291	5212	0.0369	NEUTRAL	NA	69	"ACE2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BMX,CA5B,CLCN4,CLDN34,CTPS2,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PIGA,PIR,PNPLA4,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,S100G,SCML1,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.A6.6142	23	2703632	19447236	5507	-0.0801	NEUTRAL	NA	78	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CTPS2,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MAP3K15,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.AA.3844	23	2703632	20650775	5744	0.3747	NEUTRAL	NA	83	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CTPS2,CXorf23,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MAP3K15,MAP7D2,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.AA.3848	23	2703632	23329250	6618	0.3398	NEUTRAL	NA	92	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,DDX53,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,YY2,ZNF645,ZRSR2"
TCGA.AA.3982	23	2703632	25404456	7051	0.1881	NEUTRAL	NA	107	Too-Many
TCGA.AA.3850	23	2703632	25550291	7152	-0.19875	NEUTRAL	NA	107	Too-Many
TCGA.CI.6619	23	2703632	25735887	7223	0.1804	NEUTRAL	NA	107	Too-Many
TCGA.AA.3524	23	2703632	28683199	7999	-0.0565	NEUTRAL	NA	114	Too-Many
TCGA.D5.6928	23	2703632	28869218	8115	0.0925	NEUTRAL	NA	114	Too-Many
TCGA.AG.4021	23	2703632	29061603	8219	0.0329	NEUTRAL	NA	114	Too-Many
TCGA.A6.6654	23	2703632	30798515	8708	-0.2511	NEUTRAL	NA	121	Too-Many
TCGA.AA.3678	23	2703632	30862158	8749	0.015	NEUTRAL	NA	122	Too-Many
TCGA.AG.3591	23	2703632	33689755	9815	-0.1679	NEUTRAL	NA	124	Too-Many
TCGA.G4.6626	23	2703632	34333817	9987	0.3296	NEUTRAL	NA	125	Too-Many
TCGA.AY.A71X	23	2703632	35514467	10137	0.3247	NEUTRAL	NA	127	Too-Many
TCGA.F4.6463	23	2703632	36500701	10283	0.0953	NEUTRAL	NA	129	Too-Many
TCGA.CA.6719	23	2703632	37334681	10526	-0.3688	NEUTRAL	NA	132	Too-Many
TCGA.AM.5820	23	2703632	37746327	10770	-0.0113	NEUTRAL	NA	136	Too-Many
TCGA.5M.AAT5	23	2703632	37773321	10779	0.0325	NEUTRAL	NA	136	Too-Many
TCGA.AA.3667	23	2703632	37919998	10848	0.0296	NEUTRAL	NA	138	Too-Many
TCGA.F5.6813	23	2703632	40208319	11479	0.1364	NEUTRAL	NA	144	Too-Many
TCGA.AA.3697	23	2703632	43129193	12118	-0.1422	NEUTRAL	NA	155	Too-Many
TCGA.CI.6623	23	2703632	45050381	12502	0.0034	NEUTRAL	NA	163	Too-Many
TCGA.CK.6748	23	2703632	47133091	12991	0.043	NEUTRAL	NA	175	Too-Many
TCGA.AZ.6607	23	2703632	49713241	13234	-0.4278	NEUTRAL	NA	253	Too-Many
TCGA.AA.3712	23	2703632	52668212	13694	-0.349	NEUTRAL	NA	268	Too-Many
TCGA.AD.A5EJ	23	2703632	53966983	13859	0.031	NEUTRAL	NA	285	Too-Many
TCGA.A6.2680	23	2703632	55748819	14161	0.1355	NEUTRAL	NA	306	Too-Many
TCGA.AZ.6601	23	2703632	57528752	14420	0.045	NEUTRAL	NA	312	Too-Many
TCGA.AG.3881	23	2703632	58286229	14587	-0.2924	NEUTRAL	NA	314	Too-Many
TCGA.AZ.6606	23	2703632	58317985	14330	0.0636	NEUTRAL	NA	314	Too-Many
TCGA.DM.A280	23	2703632	58317985	14537	0.0404	NEUTRAL	NA	314	Too-Many
TCGA.D5.6931	23	2703632	58438009	14421	0.0439	NEUTRAL	NA	314	Too-Many
TCGA.AF.2692	23	2703632	58496484	14584	-0.0826	NEUTRAL	NA	314	Too-Many
TCGA.AA.A01T	23	2703632	62179014	14593	-0.2375	NEUTRAL	NA	314	Too-Many
TCGA.AY.5543	23	2703632	65367514	14809	0.0402	NEUTRAL	NA	324	Too-Many
TCGA.AG.3594	23	2703632	69679206	15430	-0.2314	NEUTRAL	NA	346	Too-Many
TCGA.CM.5348	23	2703632	69775291	15593	0.038	NEUTRAL	NA	347	Too-Many
TCGA.F4.6570	23	2703632	71036148	15949	0.0276	NEUTRAL	NA	364	Too-Many
TCGA.AA.3966	23	2703632	71940613	16104	0.0199	NEUTRAL	NA	373	Too-Many
TCGA.CM.6675	23	2703632	71954758	15843	-0.1233	NEUTRAL	NA	373	Too-Many
TCGA.AG.3885	23	2703632	75087151	16507	-0.0111	NEUTRAL	NA	388	Too-Many
TCGA.AG.A020	23	2703632	75484190	16562	0.0275	NEUTRAL	NA	389	Too-Many
TCGA.DM.A1HB	23	2703632	79475727	16565	0.0394	NEUTRAL	NA	405	Too-Many
TCGA.CK.6746	23	2703632	84938826	18303	0.0316	NEUTRAL	NA	417	Too-Many
TCGA.CM.6171	23	2703632	85157810	18419	0.0395	NEUTRAL	NA	418	Too-Many
TCGA.AA.3977	23	2703632	86312324	18414	-0.0714	NEUTRAL	NA	419	Too-Many
TCGA.G5.6572	23	2703632	88442885	19271	0.122	NEUTRAL	NA	421	Too-Many
TCGA.DM.A28C	23	2703632	88443281	19332	-0.0077	NEUTRAL	NA	421	Too-Many
TCGA.4N.A93T	23	2703632	88444551	19063	-0.0299	NEUTRAL	NA	421	Too-Many
TCGA.D5.6536	23	2703632	88444551	19369	0.0224	NEUTRAL	NA	421	Too-Many
TCGA.AA.3495	23	2703632	88494864	19312	0.1085	NEUTRAL	NA	421	Too-Many
TCGA.D5.6529	23	2703632	90748416	19655	0.2766	NEUTRAL	NA	423	Too-Many
TCGA.G5.6641	23	2703632	90751925	19623	0.1972	NEUTRAL	NA	423	Too-Many
TCGA.AA.3664	23	2703632	92491787	19994	-0.005	NEUTRAL	NA	424	Too-Many
TCGA.DM.A1HA	23	2703632	92784995	19970	0.0597	NEUTRAL	NA	424	Too-Many
TCGA.D5.6538	23	2703632	94366884	20559	0.0211	NEUTRAL	NA	426	Too-Many
TCGA.AA.3679	23	2703632	94975261	20435	0.0336	NEUTRAL	NA	426	Too-Many
TCGA.DM.A28G	23	2703632	95522679	20571	-0.103	NEUTRAL	NA	426	Too-Many
TCGA.DY.A1DF	23	2703632	95826803	20926	0.3733	NEUTRAL	NA	426	Too-Many
TCGA.AA.3950	23	2703632	96266120	21051	0.0198	NEUTRAL	NA	428	Too-Many
TCGA.D5.6535	23	2703632	101084552	22121	0.3485	NEUTRAL	NA	453	Too-Many
TCGA.F4.6461	23	2703632	101357629	22144	0.0508	NEUTRAL	NA	455	Too-Many
TCGA.CL.4957	23	2703632	102556867	22385	0.3448	NEUTRAL	NA	473	Too-Many
TCGA.AA.A03F	23	2703632	103268240	22517	0.0009	NEUTRAL	NA	488	Too-Many
TCGA.AA.3986	23	2703632	103954314	22268	-0.0718	NEUTRAL	NA	494	Too-Many
TCGA.CK.4947	23	2703632	105422598	22823	0.0588	NEUTRAL	NA	498	Too-Many
TCGA.AA.3864	23	2703632	105728418	22223	-0.1016	NEUTRAL	NA	498	Too-Many
TCGA.AG.3584	23	2703632	106875866	22582	0.1682	NEUTRAL	NA	509	Too-Many
TCGA.AG.3598	23	2703632	108599504	21887	-0.1866	NEUTRAL	NA	518	Too-Many
TCGA.AA.3710	23	2703632	111656956	24074	0.0051	NEUTRAL	NA	533	Too-Many
TCGA.AA.3555	23	2703632	112907796	24442	0.0177	NEUTRAL	NA	535	Too-Many
TCGA.A6.2685	23	2703632	115529922	25074	0.2241	NEUTRAL	NA	542	Too-Many
TCGA.AA.3949	23	2703632	120861352	26625	-0.0135	NEUTRAL	NA	589	Too-Many
TCGA.DM.A1D0	23	2703632	122466537	27103	-0.0449	NEUTRAL	NA	590	Too-Many
TCGA.EI.7004	23	2703632	123450627	27335	-0.3235	NEUTRAL	NA	593	Too-Many
TCGA.AA.A022	23	2703632	124495660	27648	0.0188	NEUTRAL	NA	596	Too-Many
TCGA.CA.6717	23	2703632	127137890	27676	-0.0009	NEUTRAL	NA	599	Too-Many
TCGA.CA.5254	23	2703632	127161787	28259	-0.3896	NEUTRAL	NA	599	Too-Many
TCGA.EI.6509	23	2703632	127950090	28261	0.03	NEUTRAL	NA	600	Too-Many
TCGA.EI.6510	23	2703632	129333947	28861	0.0123	NEUTRAL	NA	611	Too-Many
TCGA.AG.3575	23	2703632	131817530	28855	-0.1073	NEUTRAL	NA	624	Too-Many
TCGA.G4.6309	23	2703632	132137956	29358	0.033	NEUTRAL	NA	624	Too-Many
TCGA.G4.6299	23	2703632	134225174	29597	-0.046	NEUTRAL	NA	639	Too-Many
TCGA.AA.3680	23	2703632	139087796	31070	0.0023	NEUTRAL	NA	672	Too-Many
TCGA.EI.6506	23	2703632	146177413	33397	0.0187	NEUTRAL	NA	694	Too-Many
TCGA.A6.5661	23	2703632	148590466	34147	-0.079	NEUTRAL	NA	698	Too-Many
TCGA.AA.3875	23	2703632	150860347	34884	0.1514	NEUTRAL	NA	715	Too-Many
TCGA.AA.3872	23	2703632	151410330	34754	0.1711	NEUTRAL	NA	724	Too-Many
TCGA.A6.6141	23	2703632	152560847	34887	0.0627	NEUTRAL	NA	739	Too-Many
TCGA.CM.6168	23	2703632	152707867	35348	0.0194	NEUTRAL	NA	741	Too-Many
TCGA.G4.6322	23	2703632	152980864	35093	0.0077	NEUTRAL	NA	750	Too-Many
TCGA.4T.AA8H	23	2703632	154925044	35610	0.0257	NEUTRAL	NA	808	Too-Many
TCGA.5M.AAT6	23	2703632	154925044	35608	-0.0012	NEUTRAL	NA	808	Too-Many
TCGA.5M.AATA	23	2703632	154925044	35136	0.0822	NEUTRAL	NA	808	Too-Many
TCGA.A6.2671	23	2703632	154925044	34918	0.0785	NEUTRAL	NA	808	Too-Many
TCGA.A6.2672	23	2703632	154925044	35476	-0.1406	NEUTRAL	NA	808	Too-Many
TCGA.A6.2677	23	2703632	154925044	32541	0.1503	NEUTRAL	NA	808	Too-Many
TCGA.A6.2679	23	2703632	154925044	35617	-0.0626	NEUTRAL	NA	808	Too-Many
TCGA.A6.2684	23	2703632	154925044	32519	0.3753	NEUTRAL	NA	808	Too-Many
TCGA.A6.3807	23	2703632	154925044	35482	0.1036	NEUTRAL	NA	808	Too-Many
TCGA.A6.3809	23	2703632	154925044	32526	-0.0603	NEUTRAL	NA	808	Too-Many
TCGA.A6.4107	23	2703632	154925044	35631	0.2237	NEUTRAL	NA	808	Too-Many
TCGA.A6.5662	23	2703632	154925044	34490	-0.0643	NEUTRAL	NA	808	Too-Many
TCGA.A6.5664	23	2703632	154925044	35156	0.0157	NEUTRAL	NA	808	Too-Many
TCGA.A6.5665	23	2703632	154925044	35563	-0.2318	NEUTRAL	NA	808	Too-Many
TCGA.A6.5667	23	2703632	154925044	35627	0	NEUTRAL	NA	808	Too-Many
TCGA.A6.6649	23	2703632	154925044	35288	0.0764	NEUTRAL	NA	808	Too-Many
TCGA.A6.6651	23	2703632	154925044	35479	-0.1194	NEUTRAL	NA	808	Too-Many
TCGA.A6.6780	23	2703632	154925044	35097	0.052	NEUTRAL	NA	808	Too-Many
TCGA.A6.6781	23	2703632	154925044	31783	0.0885	NEUTRAL	NA	808	Too-Many
TCGA.A6.A565	23	2703632	154925044	35392	0.0303	NEUTRAL	NA	808	Too-Many
TCGA.A6.A566	23	2703632	154925044	35347	0.0129	NEUTRAL	NA	808	Too-Many
TCGA.AA.3492	23	2703632	154925044	35631	-0.0328	NEUTRAL	NA	808	Too-Many
TCGA.AA.3502	23	2703632	154925044	35233	-0.0425	NEUTRAL	NA	808	Too-Many
TCGA.AA.3510	23	2703632	154925044	35299	-0.082	NEUTRAL	NA	808	Too-Many
TCGA.AA.3511	23	2703632	154925044	35324	0.1574	NEUTRAL	NA	808	Too-Many
TCGA.AA.3514	23	2703632	154925044	35621	-0.027	NEUTRAL	NA	808	Too-Many
TCGA.AA.3516	23	2703632	154925044	35554	-0.0236	NEUTRAL	NA	808	Too-Many
TCGA.AA.3517	23	2703632	154925044	34377	0.0627	NEUTRAL	NA	808	Too-Many
TCGA.AA.3518	23	2703632	154925044	35532	-0.0225	NEUTRAL	NA	808	Too-Many
TCGA.AA.3522	23	2703632	154925044	35041	-0.0339	NEUTRAL	NA	808	Too-Many
TCGA.AA.3526	23	2703632	154925044	35166	0.0071	NEUTRAL	NA	808	Too-Many
TCGA.AA.3527	23	2703632	154925044	35624	-0.0035	NEUTRAL	NA	808	Too-Many
TCGA.AA.3531	23	2703632	154925044	35624	-0.0529	NEUTRAL	NA	808	Too-Many
TCGA.AA.3532	23	2703632	154925044	34777	0.2105	NEUTRAL	NA	808	Too-Many
TCGA.AA.3534	23	2703632	154925044	35627	-0.0103	NEUTRAL	NA	808	Too-Many
TCGA.AA.3543	23	2703632	154925044	33942	-0.4796	NEUTRAL	NA	808	Too-Many
TCGA.AA.3544	23	2703632	154925044	35234	-0.2965	NEUTRAL	NA	808	Too-Many
TCGA.AA.3548	23	2703632	154925044	35656	5.00E-04	NEUTRAL	NA	808	Too-Many
TCGA.AA.3556	23	2703632	154925044	33820	0.006	NEUTRAL	NA	808	Too-Many
TCGA.AA.3558	23	2703632	154925044	34473	-0.2075	NEUTRAL	NA	808	Too-Many
TCGA.AA.3561	23	2703632	154925044	35272	-0.1792	NEUTRAL	NA	808	Too-Many
TCGA.AA.3662	23	2703632	154925044	35636	0.0087	NEUTRAL	NA	808	Too-Many
TCGA.AA.3663	23	2703632	154925044	34275	-0.1333	NEUTRAL	NA	808	Too-Many
TCGA.AA.3673	23	2703632	154925044	35663	0.1256	NEUTRAL	NA	808	Too-Many
TCGA.AA.3675	23	2703632	154925044	35251	-0.0287	NEUTRAL	NA	808	Too-Many
TCGA.AA.3681	23	2703632	154925044	35648	-0.0537	NEUTRAL	NA	808	Too-Many
TCGA.AA.3684	23	2703632	154925044	35663	0.1553	NEUTRAL	NA	808	Too-Many
TCGA.AA.3692	23	2703632	154925044	35664	-0.0303	NEUTRAL	NA	808	Too-Many
TCGA.AA.3695	23	2703632	154925044	35667	0.0182	NEUTRAL	NA	808	Too-Many
TCGA.AA.3713	23	2703632	154925044	35387	-0.0741	NEUTRAL	NA	808	Too-Many
TCGA.AA.3715	23	2703632	154925044	35333	-0.0812	NEUTRAL	NA	808	Too-Many
TCGA.AA.3814	23	2703632	154925044	35665	0.2935	NEUTRAL	NA	808	Too-Many
TCGA.AA.3819	23	2703632	154925044	35663	-0.022	NEUTRAL	NA	808	Too-Many
TCGA.AA.3821	23	2703632	154925044	35616	0.042	NEUTRAL	NA	808	Too-Many
TCGA.AA.3831	23	2703632	154925044	35230	0.0839	NEUTRAL	NA	808	Too-Many
TCGA.AA.3833	23	2703632	154925044	35662	0.0213	NEUTRAL	NA	808	Too-Many
TCGA.AA.3842	23	2703632	154925044	35160	0.3114	NEUTRAL	NA	808	Too-Many
TCGA.AA.3846	23	2703632	154925044	35611	0.0471	NEUTRAL	NA	808	Too-Many
TCGA.AA.3851	23	2703632	154925044	34805	0.2365	NEUTRAL	NA	808	Too-Many
TCGA.AA.3852	23	2703632	154925044	35475	0.024	NEUTRAL	NA	808	Too-Many
TCGA.AA.3854	23	2703632	154925044	35666	0.0033	NEUTRAL	NA	808	Too-Many
TCGA.AA.3855	23	2703632	154925044	34930	-0.112	NEUTRAL	NA	808	Too-Many
TCGA.AA.3856	23	2703632	154925044	35490	0.3415	NEUTRAL	NA	808	Too-Many
TCGA.AA.3858	23	2703632	154925044	35292	0.0709	NEUTRAL	NA	808	Too-Many
TCGA.AA.3867	23	2703632	154925044	35287	0.0318	NEUTRAL	NA	808	Too-Many
TCGA.AA.3869	23	2703632	154925044	35154	0.3296	NEUTRAL	NA	808	Too-Many
TCGA.AA.3870	23	2703632	154925044	35632	-0.1388	NEUTRAL	NA	808	Too-Many
TCGA.AA.3877	23	2703632	154925044	35635	0.0292	NEUTRAL	NA	808	Too-Many
TCGA.AA.3947	23	2703632	154925044	35623	0.0101	NEUTRAL	NA	808	Too-Many
TCGA.AA.3952	23	2703632	154925044	35044	0.0975	NEUTRAL	NA	808	Too-Many
TCGA.AA.3955	23	2703632	154925044	35336	0.2783	NEUTRAL	NA	808	Too-Many
TCGA.AA.3972	23	2703632	154925044	35268	-0.1122	NEUTRAL	NA	808	Too-Many
TCGA.AA.3979	23	2703632	154925044	34494	-0.1345	NEUTRAL	NA	808	Too-Many
TCGA.AA.3989	23	2703632	154925044	35288	-0.1098	NEUTRAL	NA	808	Too-Many
TCGA.AA.3994	23	2703632	154925044	35432	0.1122	NEUTRAL	NA	808	Too-Many
TCGA.AA.A01P	23	2703632	154925044	35618	0.0058	NEUTRAL	NA	808	Too-Many
TCGA.AA.A01R	23	2703632	154925044	35372	-0.0473	NEUTRAL	NA	808	Too-Many
TCGA.AA.A01V	23	2703632	154925044	35354	-0.047	NEUTRAL	NA	808	Too-Many
TCGA.AA.A01X	23	2703632	154925044	35602	-0.3878	NEUTRAL	NA	808	Too-Many
TCGA.AD.5900	23	2703632	154925044	35300	0.0115	NEUTRAL	NA	808	Too-Many
TCGA.AD.6548	23	2703632	154925044	35501	0.3506	NEUTRAL	NA	808	Too-Many
TCGA.AD.6889	23	2703632	154925044	35297	0.0896	NEUTRAL	NA	808	Too-Many
TCGA.AD.6895	23	2703632	154925044	35275	0.001	NEUTRAL	NA	808	Too-Many
TCGA.AD.6964	23	2703632	154925044	35092	-0.0552	NEUTRAL	NA	808	Too-Many
TCGA.AF.2687	23	2703632	154925044	34859	0.2674	NEUTRAL	NA	808	Too-Many
TCGA.AF.2690	23	2703632	154925044	35647	-0.0423	NEUTRAL	NA	808	Too-Many
TCGA.AF.2691	23	2703632	154925044	35632	0.1377	NEUTRAL	NA	808	Too-Many
TCGA.AF.4110	23	2703632	154925044	35165	-0.0155	NEUTRAL	NA	808	Too-Many
TCGA.AF.6136	23	2703632	154925044	35531	0.2457	NEUTRAL	NA	808	Too-Many
TCGA.AF.A56N	23	2703632	154925044	35229	0.3496	NEUTRAL	NA	808	Too-Many
TCGA.AG.3580	23	2703632	154925044	35236	-0.168	NEUTRAL	NA	808	Too-Many
TCGA.AG.3581	23	2703632	154925044	34834	-0.0686	NEUTRAL	NA	808	Too-Many
TCGA.AG.3583	23	2703632	154925044	31991	0.0046	NEUTRAL	NA	808	Too-Many
TCGA.AG.3599	23	2703632	154925044	34351	-0.3401	NEUTRAL	NA	808	Too-Many
TCGA.AG.3725	23	2703632	154925044	35627	0.0336	NEUTRAL	NA	808	Too-Many
TCGA.AG.3731	23	2703632	154925044	35239	0.0445	NEUTRAL	NA	808	Too-Many
TCGA.AG.3887	23	2703632	154925044	35037	0.2236	NEUTRAL	NA	808	Too-Many
TCGA.AG.3892	23	2703632	154925044	35483	0.0304	NEUTRAL	NA	808	Too-Many
TCGA.AG.3894	23	2703632	154925044	35229	0.082	NEUTRAL	NA	808	Too-Many
TCGA.AG.3896	23	2703632	154925044	35503	0.0149	NEUTRAL	NA	808	Too-Many
TCGA.AG.3901	23	2703632	154925044	35500	0.0837	NEUTRAL	NA	808	Too-Many
TCGA.AG.4015	23	2703632	154925044	35498	0.2639	NEUTRAL	NA	808	Too-Many
TCGA.AG.A02N	23	2703632	154925044	35049	0.0348	NEUTRAL	NA	808	Too-Many
TCGA.AH.6544	23	2703632	154925044	35040	0.3362	NEUTRAL	NA	808	Too-Many
TCGA.AH.6547	23	2703632	154925044	35534	0.0465	NEUTRAL	NA	808	Too-Many
TCGA.AU.3779	23	2703632	154925044	35640	0.3084	NEUTRAL	NA	808	Too-Many
TCGA.AU.6004	23	2703632	154925044	35412	0.0376	NEUTRAL	NA	808	Too-Many
TCGA.AY.4070	23	2703632	154925044	35493	-0.0268	NEUTRAL	NA	808	Too-Many
TCGA.AY.4071	23	2703632	154925044	35501	-0.0187	NEUTRAL	NA	808	Too-Many
TCGA.AY.6197	23	2703632	154925044	33311	-0.1444	NEUTRAL	NA	808	Too-Many
TCGA.AY.6386	23	2703632	154925044	35622	0.0399	NEUTRAL	NA	808	Too-Many
TCGA.AZ.4315	23	2703632	154925044	35159	-0.2372	NEUTRAL	NA	808	Too-Many
TCGA.AZ.4616	23	2703632	154925044	35528	0.047	NEUTRAL	NA	808	Too-Many
TCGA.AZ.5403	23	2703632	154925044	35107	0.2546	NEUTRAL	NA	808	Too-Many
TCGA.AZ.5407	23	2703632	154925044	35641	-0.0265	NEUTRAL	NA	808	Too-Many
TCGA.AZ.6599	23	2703632	154925044	35468	0.0803	NEUTRAL	NA	808	Too-Many
TCGA.AZ.6605	23	2703632	154925044	35162	0.2889	NEUTRAL	NA	808	Too-Many
TCGA.BM.6198	23	2703632	154925044	35143	0.13875	NEUTRAL	NA	808	Too-Many
TCGA.CA.5255	23	2703632	154925044	35140	0.2777	NEUTRAL	NA	808	Too-Many
TCGA.CA.5256	23	2703632	154925044	35444	0.0295	NEUTRAL	NA	808	Too-Many
TCGA.CA.5796	23	2703632	154925044	35604	0.0286	NEUTRAL	NA	808	Too-Many
TCGA.CA.5797	23	2703632	154925044	35383	0.3394	NEUTRAL	NA	808	Too-Many
TCGA.CA.6718	23	2703632	154925044	34682	0.1436	NEUTRAL	NA	808	Too-Many
TCGA.CI.6620	23	2703632	154925044	35516	0.0227	NEUTRAL	NA	808	Too-Many
TCGA.CI.6622	23	2703632	154925044	35110	-0.0085	NEUTRAL	NA	808	Too-Many
TCGA.CI.6624	23	2703632	154925044	35524	0.1201	NEUTRAL	NA	808	Too-Many
TCGA.CK.4950	23	2703632	154925044	35306	0.3122	NEUTRAL	NA	808	Too-Many
TCGA.CK.4951	23	2703632	154925044	35524	0.3286	NEUTRAL	NA	808	Too-Many
TCGA.CK.5912	23	2703632	154925044	34686	0.1154	NEUTRAL	NA	808	Too-Many
TCGA.CK.5915	23	2703632	154925044	35188	0.1939	NEUTRAL	NA	808	Too-Many
TCGA.CK.5916	23	2703632	154925044	35582	0.0345	NEUTRAL	NA	808	Too-Many
TCGA.CK.6747	23	2703632	154925044	35501	0.0318	NEUTRAL	NA	808	Too-Many
TCGA.CK.6751	23	2703632	154925044	35444	0.0163	NEUTRAL	NA	808	Too-Many
TCGA.CM.4743	23	2703632	154925044	35411	0.1004	NEUTRAL	NA	808	Too-Many
TCGA.CM.4746	23	2703632	154925044	35368	-0.0177	NEUTRAL	NA	808	Too-Many
TCGA.CM.4747	23	2703632	154925044	35197	0.2568	NEUTRAL	NA	808	Too-Many
TCGA.CM.4748	23	2703632	154925044	35433	-0.0461	NEUTRAL	NA	808	Too-Many
TCGA.CM.5344	23	2703632	154925044	35640	-0.1503	NEUTRAL	NA	808	Too-Many
TCGA.CM.5349	23	2703632	154925044	35638	0.0651	NEUTRAL	NA	808	Too-Many
TCGA.CM.5861	23	2703632	154925044	35612	0.0522	NEUTRAL	NA	808	Too-Many
TCGA.CM.5862	23	2703632	154925044	35174	0.293	NEUTRAL	NA	808	Too-Many
TCGA.CM.5863	23	2703632	154925044	35520	0.2906	NEUTRAL	NA	808	Too-Many
TCGA.CM.6161	23	2703632	154925044	35575	0	NEUTRAL	NA	808	Too-Many
TCGA.CM.6162	23	2703632	154925044	35549	0.0533	NEUTRAL	NA	808	Too-Many
TCGA.CM.6164	23	2703632	154925044	35597	0.2499	NEUTRAL	NA	808	Too-Many
TCGA.CM.6167	23	2703632	154925044	35613	0.1917	NEUTRAL	NA	808	Too-Many
TCGA.CM.6674	23	2703632	154925044	34951	0.0337	NEUTRAL	NA	808	Too-Many
TCGA.CM.6677	23	2703632	154925044	35445	-0.0178	NEUTRAL	NA	808	Too-Many
TCGA.CM.6680	23	2703632	154925044	35540	0.0421	NEUTRAL	NA	808	Too-Many
TCGA.D5.5539	23	2703632	154925044	35248	0.2551	NEUTRAL	NA	808	Too-Many
TCGA.D5.5540	23	2703632	154925044	35255	0.0153	NEUTRAL	NA	808	Too-Many
TCGA.D5.6530	23	2703632	154925044	35302	-0.067	NEUTRAL	NA	808	Too-Many
TCGA.D5.6534	23	2703632	154925044	35527	0.0107	NEUTRAL	NA	808	Too-Many
TCGA.D5.6540	23	2703632	154925044	34914	-0.1369	NEUTRAL	NA	808	Too-Many
TCGA.D5.6541	23	2703632	154925044	35398	0.0735	NEUTRAL	NA	808	Too-Many
TCGA.D5.6898	23	2703632	154925044	35535	-0.3125	NEUTRAL	NA	808	Too-Many
TCGA.D5.6920	23	2703632	154925044	35530	0.0401	NEUTRAL	NA	808	Too-Many
TCGA.D5.6927	23	2703632	154925044	35377	0.1355	NEUTRAL	NA	808	Too-Many
TCGA.D5.6930	23	2703632	154925044	35217	0.141	NEUTRAL	NA	808	Too-Many
TCGA.D5.6932	23	2703632	154925044	35328	0.1503	NEUTRAL	NA	808	Too-Many
TCGA.DC.4749	23	2703632	154925044	35280	0.3121	NEUTRAL	NA	808	Too-Many
TCGA.DC.6681	23	2703632	154925044	35508	0.074	NEUTRAL	NA	808	Too-Many
TCGA.DM.A0XF	23	2703632	154925044	35637	0.0086	NEUTRAL	NA	808	Too-Many
TCGA.DM.A1D4	23	2703632	154925044	35414	-0.0574	NEUTRAL	NA	808	Too-Many
TCGA.DM.A1D6	23	2703632	154925044	35111	0.0444	NEUTRAL	NA	808	Too-Many
TCGA.DM.A1D7	23	2703632	154925044	35420	0.0339	NEUTRAL	NA	808	Too-Many
TCGA.DM.A288	23	2703632	154925044	35007	0.3654	NEUTRAL	NA	808	Too-Many
TCGA.DM.A28A	23	2703632	154925044	35143	0.1044	NEUTRAL	NA	808	Too-Many
TCGA.DM.A28K	23	2703632	154925044	35095	-0.0221	NEUTRAL	NA	808	Too-Many
TCGA.DY.A0XA	23	2703632	154925044	35611	0.2297	NEUTRAL	NA	808	Too-Many
TCGA.EF.5830	23	2703632	154925044	35350	0.1986	NEUTRAL	NA	808	Too-Many
TCGA.EI.6507	23	2703632	154925044	35211	-0.0828	NEUTRAL	NA	808	Too-Many
TCGA.EI.6514	23	2703632	154925044	35597	0.3543	NEUTRAL	NA	808	Too-Many
TCGA.EI.6881	23	2703632	154925044	35323	0.1968	NEUTRAL	NA	808	Too-Many
TCGA.EI.6882	23	2703632	154925044	35390	0.1114	NEUTRAL	NA	808	Too-Many
TCGA.EI.6883	23	2703632	154925044	35293	0.1559	NEUTRAL	NA	808	Too-Many
TCGA.EI.6884	23	2703632	154925044	34936	0.1712	NEUTRAL	NA	808	Too-Many
TCGA.EI.6885	23	2703632	154925044	35534	0.0362	NEUTRAL	NA	808	Too-Many
TCGA.EI.6917	23	2703632	154925044	35234	0.1434	NEUTRAL	NA	808	Too-Many
TCGA.F4.6569	23	2703632	154925044	35297	-0.0234	NEUTRAL	NA	808	Too-Many
TCGA.F4.6703	23	2703632	154925044	35222	0.1006	NEUTRAL	NA	808	Too-Many
TCGA.F4.6704	23	2703632	154925044	35374	0.1381	NEUTRAL	NA	808	Too-Many
TCGA.F4.6805	23	2703632	154925044	35542	0.0908	NEUTRAL	NA	808	Too-Many
TCGA.F4.6806	23	2703632	154925044	35492	0.2216	NEUTRAL	NA	808	Too-Many
TCGA.F4.6807	23	2703632	154925044	35535	0.3337	NEUTRAL	NA	808	Too-Many
TCGA.F4.6809	23	2703632	154925044	35538	0.0246	NEUTRAL	NA	808	Too-Many
TCGA.F4.6854	23	2703632	154925044	35539	0.0362	NEUTRAL	NA	808	Too-Many
TCGA.F4.6855	23	2703632	154925044	35535	0.0448	NEUTRAL	NA	808	Too-Many
TCGA.F4.6856	23	2703632	154925044	35306	0.0261	NEUTRAL	NA	808	Too-Many
TCGA.F5.6571	23	2703632	154925044	35502	-0.166	NEUTRAL	NA	808	Too-Many
TCGA.F5.6812	23	2703632	154925044	35254	0.1049	NEUTRAL	NA	808	Too-Many
TCGA.F5.6861	23	2703632	154925044	35536	0.023	NEUTRAL	NA	808	Too-Many
TCGA.F5.6863	23	2703632	154925044	35540	0.0214	NEUTRAL	NA	808	Too-Many
TCGA.F5.6864	23	2703632	154925044	35543	-0.4967	NEUTRAL	NA	808	Too-Many
TCGA.G4.6293	23	2703632	154925044	35632	0.0447	NEUTRAL	NA	808	Too-Many
TCGA.G4.6297	23	2703632	154925044	35626	0.3639	NEUTRAL	NA	808	Too-Many
TCGA.G4.6298	23	2703632	154925044	35189	0.0691	NEUTRAL	NA	808	Too-Many
TCGA.G4.6302	23	2703632	154925044	35633	-0.0591	NEUTRAL	NA	808	Too-Many
TCGA.G4.6304	23	2703632	154925044	35541	0.045	NEUTRAL	NA	808	Too-Many
TCGA.G4.6307	23	2703632	154925044	35631	0.2884	NEUTRAL	NA	808	Too-Many
TCGA.G4.6315	23	2703632	154925044	35384	0.0156	NEUTRAL	NA	808	Too-Many
TCGA.G4.6320	23	2703632	154925044	35461	0.2539	NEUTRAL	NA	808	Too-Many
TCGA.G4.6321	23	2703632	154925044	35636	0.0014	NEUTRAL	NA	808	Too-Many
TCGA.G4.6323	23	2703632	154925044	35215	-0.0528	NEUTRAL	NA	808	Too-Many
TCGA.G4.6586	23	2703632	154925044	35628	0.0241	NEUTRAL	NA	808	Too-Many
TCGA.G4.6628	23	2703632	154925044	35308	-0.0225	NEUTRAL	NA	808	Too-Many
TCGA.NH.A50T	23	2703632	154925044	35405	-0.4235	NEUTRAL	NA	808	Too-Many
TCGA.NH.A50V	23	2703632	154925044	35004	-0.0374	NEUTRAL	NA	808	Too-Many
TCGA.NH.A5IV	23	2703632	154925044	34997	0.2815	NEUTRAL	NA	808	Too-Many
TCGA.NH.A6GA	23	2703632	154925044	34518	-0.0205	NEUTRAL	NA	808	Too-Many
TCGA.NH.A6GC	23	2703632	154925044	35599	-0.4385	NEUTRAL	NA	808	Too-Many
TCGA.NH.A8F8	23	2703632	154925044	35377	0.0614	NEUTRAL	NA	808	Too-Many
TCGA.QG.A5YV	23	2703632	154925044	35351	0	NEUTRAL	NA	808	Too-Many
TCGA.QG.A5YW	23	2703632	154925044	35415	0.2574	NEUTRAL	NA	808	Too-Many
TCGA.QG.A5YX	23	2703632	154925044	35356	-0.3554	NEUTRAL	NA	808	Too-Many
TCGA.QG.A5Z1	23	2703632	154925044	34835	-0.0905	NEUTRAL	NA	808	Too-Many
TCGA.QG.A5Z2	23	2703632	154925044	34929	-0.1308	NEUTRAL	NA	808	Too-Many
TCGA.WS.AB45	23	2703632	154925044	35613	-0.0256	NEUTRAL	NA	808	Too-Many
TCGA.F5.6811.01A	23	2710042	21429496	817	-0.3619	NEUTRAL	NA	84	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MAGEB17,MAP3K15,MAP7D2,MID1,MOSPD2,MSL3,MXRA5,NHS,NLGN4X,OFD1,PDHA1,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRKX,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.DC.6160.01A	23	2710042	154427904	6082	-0.0367	NEUTRAL	NA	804	Too-Many
TCGA.AG.A01W.01A	23	2710063	2742353	8	-0.1972	NEUTRAL	NA	1	XG
TCGA.AG.A036.01A	23	2710063	154427905	6029	-0.1675	NEUTRAL	NA	804	Too-Many
TCGA.D5.6929	23	2714755	154925044	35532	0	NEUTRAL	NA	808	Too-Many
TCGA.AA.3660	23	2717032	2718134	4	-0.4644	NEUTRAL	NA	1	XG
TCGA.AA.3660	23	2719110	2774608	17	0.3362	NEUTRAL	NA	2	"GYG2,XG"
TCGA.AZ.4684.01A	23	2726147	13825737	331	0.1415	NEUTRAL	NA	43	"AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ATXN3L,CLCN4,CLDN34,EGFL6,FAM9A,FAM9B,FAM9C,FRMPD4,GPM6B,GPR143,GYG2,HCCS,HDHD1,MID1,MSL3,MXRA5,NLGN4X,OFD1,PNPLA4,PRKX,PRPS2,RAB9A,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMSB4X,TRAPPC2,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.AA.3660	23	2776152	24351908	6920	0.1713	NEUTRAL	NA	101	Too-Many
TCGA.A6.A567	23	2778432	154925044	34827	0.0877	NEUTRAL	NA	807	Too-Many
TCGA.AG.A01W.01A	23	2803805	2961013	32	-0.2232	NEUTRAL	NA	4	"ARSD,ARSE,ARSF,ARSH"
TCGA.CK.5914.01A	23	2828671	2871145	14	-0.3959	NEUTRAL	NA	2	"ARSD,ARSE"
TCGA.AG.A00C.01A	23	2876278	3030165	21	0.099	NEUTRAL	NA	3	"ARSE,ARSF,ARSH"
TCGA.AG.A01W.01A	23	2996072	16548252	441	0.2732	NEUTRAL	NA	55	"ACE2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSF,ASB11,ASB9,ATXN3L,BMX,CA5B,CLCN4,CLDN34,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,HDHD1,MAGEB17,MID1,MOSPD2,MSL3,MXRA5,NLGN4X,OFD1,PIGA,PIR,PNPLA4,PRKX,PRPS2,RAB9A,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,VCX,VCX2,VCX3A,VCX3B,WWC3,ZRSR2"
TCGA.AA.3941	23	3215651	3219342	16	-0.379	NEUTRAL	NA	0	None
TCGA.CK.5914.01A	23	3227720	3261676	6	-0.3812	NEUTRAL	NA	1	MXRA5
TCGA.AA.A00Z.01A	23	3227720	150348772	54	-0.1396	NEUTRAL	NA	707	Too-Many
TCGA.AG.3605.01A	23	3227720	151900334	151	0.0333	NEUTRAL	NA	724	Too-Many
TCGA.AA.3968	23	3296722	145591174	32975	0.0846	NEUTRAL	NA	685	Too-Many
TCGA.AA.3941	23	3372267	3376303	6	-0.4871	NEUTRAL	NA	0	None
TCGA.AA.3941	23	3379940	4016481	146	0.2432	NEUTRAL	NA	1	PRKX
TCGA.AG.3909.01A	23	3530189	7869982	29	0.3141	NEUTRAL	NA	7	"HDHD1,NLGN4X,PNPLA4,PRKX,STS,VCX,VCX3A"
TCGA.AG.A00C.01A	23	3559856	8768069	50	0.0998	NEUTRAL	NA	11	"ANOS1,FAM9A,HDHD1,NLGN4X,PNPLA4,PRKX,STS,VCX,VCX2,VCX3A,VCX3B"
TCGA.G4.6314	23	3681369	154925044	35234	-0.3254	NEUTRAL	NA	800	Too-Many
TCGA.AA.3941	23	4027718	4121572	55	-0.0179	NEUTRAL	NA	0	None
TCGA.AA.3941	23	4131528	4212648	46	-0.1179	NEUTRAL	NA	0	None
TCGA.AA.3941	23	4227726	5384806	463	-0.0495	NEUTRAL	NA	0	None
TCGA.AA.A03J	23	4288059	34042253	9115	0.2645	NEUTRAL	NA	116	Too-Many
TCGA.AA.A01S	23	4604639	9067588	1685	-0.04655	NEUTRAL	NA	11	"ANOS1,FAM9A,FAM9B,HDHD1,NLGN4X,PNPLA4,STS,VCX,VCX2,VCX3A,VCX3B"
TCGA.AA.3866	23	4886032	5955915	506	-0.1705	NEUTRAL	NA	1	NLGN4X
TCGA.AA.3941	23	5390735	25404456	6161	0.0308	NEUTRAL	NA	99	"ACE2,ACOT9,ADGRG2,AMELX,ANOS1,AP1S2,APOO,ARHGAP6,ARX,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,CXorf58,DDX53,EGFL6,EIF1AX,EIF2S3,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,HDHD1,KLHL15,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,NHS,NLGN4X,OFD1,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,PIGA,PIR,PNPLA4,POLA1,PPEF1,PRDX4,PRPS2,PTCHD1,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SAT1,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SUPT20HL1,SUPT20HL2,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3A,VCX3B,WWC3,YY2,ZFX,ZNF645,ZRSR2"
TCGA.AA.3866	23	6388554	12901959	2326	-0.1808	NEUTRAL	NA	24	"AMELX,ANOS1,ARHGAP6,CLCN4,CLDN34,FAM9A,FAM9B,FRMPD4,GPR143,HCCS,HDHD1,MID1,MSL3,PNPLA4,PRPS2,SHROOM2,STS,TBL1X,TLR7,VCX,VCX2,VCX3A,VCX3B,WWC3"
TCGA.A6.6650	23	6479206	7147330	221	0.1998	NEUTRAL	NA	2	"HDHD1,STS"
TCGA.D5.6533	23	6482091	6789763	100	-0.0339	NEUTRAL	NA	0	None
TCGA.DM.A1D8	23	6591160	6694828	31	-0.2917	NEUTRAL	NA	0	None
TCGA.DM.A0X9	23	6648466	6755909	39	-0.0997	NEUTRAL	NA	0	None
TCGA.A6.6648	23	6683449	7106205	160	-0.3044	NEUTRAL	NA	1	HDHD1
TCGA.DM.A1D8	23	6695173	22856061	4792	0.3056	NEUTRAL	NA	81	"ACE2,ADGRG2,AMELX,ANOS1,AP1S2,ARHGAP6,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CNKSR2,CTPS2,CXorf23,EGFL6,EIF1AX,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,HDHD1,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MID1,MOSPD2,MSL3,NHS,OFD1,PDHA1,PHEX,PHKA2,PIGA,PIR,PNPLA4,PPEF1,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SMPX,SMS,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3B,WWC3,YY2,ZNF645,ZRSR2"
TCGA.QL.A97D	23	6711826	6715163	4	-0.3922	NEUTRAL	NA	0	None
TCGA.DM.A28H	23	6721721	7003706	111	0.0765	NEUTRAL	NA	1	HDHD1
TCGA.DM.A28F	23	6722471	7144529	149	0.1123	NEUTRAL	NA	2	"HDHD1,STS"
TCGA.AF.3913	23	6746227	6980321	86	0.0376	NEUTRAL	NA	1	HDHD1
TCGA.DM.A0X9	23	6760609	7397774	207	0.3513	NEUTRAL	NA	2	"HDHD1,STS"
TCGA.AG.3592	23	6774754	7057676	106	0.2167	NEUTRAL	NA	1	HDHD1
TCGA.AY.A69D	23	6873700	6970003	32	-0.3691	NEUTRAL	NA	1	HDHD1
TCGA.AZ.4681	23	6899462	7014984	51	-0.4662	NEUTRAL	NA	1	HDHD1
TCGA.A6.2681	23	6899462	7202512	101	-0.2308	NEUTRAL	NA	2	"HDHD1,STS"
TCGA.DC.6682	23	6904444	7059035	62	-0.3155	NEUTRAL	NA	1	HDHD1
TCGA.F4.6459	23	6905601	7114693	81	0.1249	NEUTRAL	NA	1	HDHD1
TCGA.AG.3883	23	6930693	7002157	41	0.3029	NEUTRAL	NA	1	HDHD1
TCGA.A6.2683	23	6963236	6996912	30	-0.3506	NEUTRAL	NA	1	HDHD1
TCGA.AA.3693	23	6980321	149472749	32685	-0.0987	NEUTRAL	NA	697	Too-Many
TCGA.A6.2683	23	7000467	7057676	19	0.2422	NEUTRAL	NA	1	HDHD1
TCGA.F5.6464	23	7003706	7114580	35	-0.2443	NEUTRAL	NA	1	HDHD1
TCGA.AA.3529	23	7003706	7442366	121	-0.4473	NEUTRAL	NA	2	"HDHD1,STS"
TCGA.AY.A69D	23	7014766	7209426	55	-0.4731	NEUTRAL	NA	2	"HDHD1,STS"
TCGA.AZ.4681	23	7019233	154925044	33916	0.0233	NEUTRAL	NA	798	Too-Many
TCGA.AH.6549.01A	23	7034945	123805481	4614	0.2431	NEUTRAL	NA	585	Too-Many
TCGA.DC.5869	23	7066603	7103911	15	-0.4019	NEUTRAL	NA	0	None
TCGA.A6.2683	23	7075792	7251431	45	0.2186	NEUTRAL	NA	1	STS
TCGA.A6.6648	23	7108849	140869926	29452	0.3063	NEUTRAL	NA	670	Too-Many
TCGA.A6.6653	23	7108849	154925044	33605	0.0243	NEUTRAL	NA	797	Too-Many
TCGA.NH.A6GB	23	7108849	154925044	33299	0.2713	NEUTRAL	NA	797	Too-Many
TCGA.AG.3726	23	7114580	7344236	55	-0.3295	NEUTRAL	NA	1	STS
TCGA.F5.6464	23	7114693	122368504	25395	0.3405	NEUTRAL	NA	579	Too-Many
TCGA.G4.6303	23	7120420	48613189	11527	-0.3769	NEUTRAL	NA	191	Too-Many
TCGA.CM.5860	23	7161474	7742054	162	0.0637	NEUTRAL	NA	1	STS
TCGA.AA.A00L.01A	23	7171196	7267918	8	0.2566	NEUTRAL	NA	1	STS
TCGA.A6.3810.01A	23	7193989	7267918	5	-0.3165	NEUTRAL	NA	1	STS
TCGA.AA.A01Q.01A	23	7193989	9656020	42	0.1411	NEUTRAL	NA	9	"ANOS1,FAM9A,FAM9B,PNPLA4,STS,TBL1X,VCX,VCX2,VCX3B"
TCGA.AY.A69D	23	7212276	154925044	33273	-0.0017	NEUTRAL	NA	797	Too-Many
TCGA.DY.A1DD	23	7251431	16950576	3264	0.0169	NEUTRAL	NA	54	"ACE2,AMELX,ANOS1,AP1S2,ARHGAP6,ASB11,ASB9,ATXN3L,BMX,CA5B,CLCN4,CLDN34,CTPS2,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,MAGEB17,MID1,MOSPD2,MSL3,OFD1,PIGA,PIR,PNPLA4,PRPS2,RAB9A,RBBP7,S100G,SHROOM2,STS,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,VCX,VCX2,VCX3B,WWC3,ZRSR2"
TCGA.A6.2683	23	7258186	7830763	167	-0.4343	NEUTRAL	NA	2	"STS,VCX"
TCGA.AA.3812	23	7265934	7702326	132	-0.0061	NEUTRAL	NA	1	STS
TCGA.G4.6588	23	7266779	7478400	62	-0.412	NEUTRAL	NA	1	STS
TCGA.AF.5654	23	7277080	7415620	45	0.065	NEUTRAL	NA	0	None
TCGA.AG.A026	23	7325696	7524034	57	-0.3993	NEUTRAL	NA	0	None
TCGA.EI.6508	23	7329559	7990841	228	-0.0115	NEUTRAL	NA	2	"PNPLA4,VCX"
TCGA.A6.2681	23	7343947	7400384	24	-0.266	NEUTRAL	NA	0	None
TCGA.AG.3726	23	7345548	136559950	28487	0.1222	NEUTRAL	NA	654	Too-Many
TCGA.DM.A0X9	23	7398874	7681600	83	-0.0949	NEUTRAL	NA	0	None
TCGA.A6.2681	23	7400493	73938291	14509	0.1394	NEUTRAL	NA	371	Too-Many
TCGA.AG.3592	23	7415620	7557245	43	0.1374	NEUTRAL	NA	0	None
TCGA.AA.3666	23	7450306	7702326	77	0.3565	NEUTRAL	NA	0	None
TCGA.G4.6588	23	7482695	154925044	33795	0.0354	NEUTRAL	NA	796	Too-Many
TCGA.A6.2686	23	7496167	81283770	15771	-0.3895	NEUTRAL	NA	397	Too-Many
TCGA.AA.3489	23	7534066	154925044	33148	0.0898	NEUTRAL	NA	796	Too-Many
TCGA.A6.2674	23	7561176	154925044	32881	0.0715	NEUTRAL	NA	796	Too-Many
TCGA.AZ.4308	23	7561176	154925044	33765	-0.0206	NEUTRAL	NA	796	Too-Many
TCGA.AA.3529	23	7702326	154925044	33720	-0.0125	NEUTRAL	NA	796	Too-Many
TCGA.AF.A56L	23	7747228	11971858	1387	0.0099	NEUTRAL	NA	18	"AMELX,ANOS1,ARHGAP6,CLCN4,CLDN34,FAM9A,FAM9B,GPR143,HCCS,MID1,MSL3,PNPLA4,SHROOM2,TBL1X,VCX,VCX2,VCX3B,WWC3"
TCGA.A6.2683	23	7840974	7874502	29	-0.0789	NEUTRAL	NA	1	PNPLA4
TCGA.CK.5914.01A	23	7868675	8094965	7	-0.3596	NEUTRAL	NA	1	PNPLA4
TCGA.A6.2683	23	7899104	154925044	33618	0.2398	NEUTRAL	NA	794	Too-Many
TCGA.AM.5821	23	7906286	154925044	33578	-0.1128	NEUTRAL	NA	794	Too-Many
TCGA.F4.6460	23	7926690	57562978	12502	-0.2332	NEUTRAL	NA	298	Too-Many
TCGA.AZ.4615	23	8034812	154925044	33186	-0.2038	NEUTRAL	NA	794	Too-Many
TCGA.A6.6138	23	8080445	154925044	33375	0.0387	NEUTRAL	NA	794	Too-Many
TCGA.EI.6508	23	8111255	116334922	23274	0.0279	NEUTRAL	NA	530	Too-Many
TCGA.AA.3666	23	8417527	154925044	33262	0.2676	NEUTRAL	NA	793	Too-Many
TCGA.AG.3909.01A	23	8434359	8667661	14	0.2949	NEUTRAL	NA	2	"ANOS1,VCX3B"
TCGA.AA.3980.01A	23	8759289	8768069	7	-0.3083	NEUTRAL	NA	1	FAM9A
TCGA.AA.A00N.01A	23	8766970	10077766	48	0.0632	NEUTRAL	NA	7	"CLDN34,FAM9A,FAM9B,GPR143,SHROOM2,TBL1X,WWC3"
TCGA.AG.A00C.01A	23	8993493	10534966	77	0.3411	NEUTRAL	NA	8	"CLCN4,CLDN34,FAM9B,GPR143,MID1,SHROOM2,TBL1X,WWC3"
TCGA.AA.3930.01A	23	8993493	11318628	102	0.0964	NEUTRAL	NA	11	"AMELX,ARHGAP6,CLCN4,CLDN34,FAM9B,GPR143,HCCS,MID1,SHROOM2,TBL1X,WWC3"
TCGA.AA.3980.01A	23	8993493	31462551	974	0.1721	NEUTRAL	NA	106	Too-Many
TCGA.CK.5914.01A	23	9000961	10062142	39	0.3567	NEUTRAL	NA	6	"CLDN34,FAM9B,GPR143,SHROOM2,TBL1X,WWC3"
TCGA.AA.A01S	23	9470720	15436943	2106	0.02925	NEUTRAL	NA	33	"AMELX,ARHGAP6,ASB11,ASB9,ATXN3L,CLCN4,CLDN34,EGFL6,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,HCCS,MID1,MOSPD2,MSL3,OFD1,PIGA,PIR,PRPS2,RAB9A,SHROOM2,TBL1X,TCEANC,TLR7,TLR8,TMSB4X,TRAPPC2,WWC3"
TCGA.AA.A01Q.01A	23	9659572	9728705	18	-0.4192	NEUTRAL	NA	2	"GPR143,TBL1X"
TCGA.AA.A017.01A	23	9661124	18917231	484	-0.0154	NEUTRAL	NA	56	"ACE2,AMELX,AP1S2,ARHGAP6,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CTPS2,EGFL6,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,MAGEB17,MID1,MOSPD2,MSL3,NHS,OFD1,PHKA2,PIGA,PIR,PPEF1,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SHROOM2,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,WWC3,ZRSR2"
TCGA.AA.A02E.01A	23	9661124	19688885	577	-0.2279	NEUTRAL	NA	60	"ACE2,ADGRG2,AMELX,AP1S2,ARHGAP6,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CLCN4,CLDN34,CTPS2,EGFL6,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,HCCS,MAGEB17,MAP3K15,MID1,MOSPD2,MSL3,NHS,OFD1,PDHA1,PHKA2,PIGA,PIR,PPEF1,PRPS2,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SH3KBP1,SHROOM2,SYAP1,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,WWC3,ZRSR2"
TCGA.AG.3909.01A	23	9672984	10066516	30	-0.001	NEUTRAL	NA	5	"CLDN34,GPR143,SHROOM2,TBL1X,WWC3"
TCGA.A6.6652	23	9734346	154925044	32432	0.0478	NEUTRAL	NA	787	Too-Many
TCGA.AA.A01Q.01A	23	9841660	11776336	76	0.0679	NEUTRAL	NA	9	"AMELX,ARHGAP6,CLCN4,CLDN34,HCCS,MID1,MSL3,SHROOM2,WWC3"
TCGA.CK.5914.01A	23	10066516	10109408	16	-0.4596	NEUTRAL	NA	1	WWC3
TCGA.AA.A024.01A	23	10090612	70683635	2651	0.0563	NEUTRAL	NA	336	Too-Many
TCGA.AG.3611.01A	23	10093010	10155526	12	-0.2341	NEUTRAL	NA	2	"CLCN4,WWC3"
TCGA.AF.2693	23	10106219	96462102	18010	-0.049	NEUTRAL	NA	405	Too-Many
TCGA.AG.3909.01A	23	10153031	10534966	19	0.2545	NEUTRAL	NA	2	"CLCN4,MID1"
TCGA.AG.3611.01A	23	10162914	16627617	272	0.1117	NEUTRAL	NA	37	"ACE2,AMELX,AP1S2,ARHGAP6,ASB11,ASB9,ATXN3L,BMX,CA5B,CLCN4,CTPS2,EGFL6,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GRPR,HCCS,MAGEB17,MID1,MOSPD2,MSL3,OFD1,PIGA,PIR,PRPS2,RAB9A,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,ZRSR2"
TCGA.F5.6465	23	10806300	18063755	2181	0.002	NEUTRAL	NA	44	"ACE2,AMELX,AP1S2,ARHGAP6,ASB11,ASB9,ATXN3L,BMX,CA5B,CTPS2,EGFL6,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GRPR,HCCS,MAGEB17,MID1,MOSPD2,MSL3,NHS,OFD1,PIGA,PIR,PRPS2,RAB9A,RAI2,RBBP7,REPS2,S100G,SCML1,SYAP1,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,ZRSR2"
TCGA.DM.A1D9	23	10835428	112742453	21308	0.0018	NEUTRAL	NA	510	Too-Many
TCGA.AG.3909.01A	23	11161971	11682324	17	-0.036	NEUTRAL	NA	2	"AMELX,ARHGAP6"
TCGA.CK.5914.01A	23	11161971	11776763	19	0.3536	NEUTRAL	NA	3	"AMELX,ARHGAP6,MSL3"
TCGA.AZ.4323	23	11174302	154925044	32024	0.1079	NEUTRAL	NA	781	Too-Many
TCGA.AG.A00C.01A	23	11174598	11682324	16	0.1879	NEUTRAL	NA	2	"AMELX,ARHGAP6"
TCGA.D5.6923	23	11456333	12283221	359	-0.0757	NEUTRAL	NA	3	"ARHGAP6,FRMPD4,MSL3"
TCGA.AA.3930.01A	23	11682324	11780201	8	-0.4688	NEUTRAL	NA	2	"ARHGAP6,MSL3"
TCGA.AG.4009.01A	23	11682324	11790246	11	-0.2807	NEUTRAL	NA	2	"ARHGAP6,MSL3"
TCGA.CK.5914.01A	23	11777882	11790691	11	-0.513	NEUTRAL	NA	1	MSL3
TCGA.AA.3930.01A	23	11780904	15827275	228	0.0649	NEUTRAL	NA	28	"ACE2,ASB11,ASB9,ATXN3L,BMX,CA5B,EGFL6,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,MOSPD2,MSL3,OFD1,PIGA,PIR,PRPS2,RAB9A,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,ZRSR2"
TCGA.AG.3909.01A	23	11783604	11790691	4	-0.2276	NEUTRAL	NA	1	MSL3
TCGA.AA.A01Q.01A	23	11783604	17749948	299	0.1033	NEUTRAL	NA	38	"ACE2,AP1S2,ASB11,ASB9,ATXN3L,BMX,CA5B,CTPS2,EGFL6,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GRPR,MAGEB17,MOSPD2,MSL3,NHS,OFD1,PIGA,PIR,PRPS2,RAB9A,RBBP7,REPS2,S100G,SYAP1,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,ZRSR2"
TCGA.AG.3909.01A	23	11793082	12736168	18	0.3222	NEUTRAL	NA	2	"FRMPD4,MSL3"
TCGA.AF.A56L	23	12107747	46598738	9482	0.0177	NEUTRAL	NA	137	Too-Many
TCGA.AA.A010.01A	23	12157023	12738551	18	-0.2219	NEUTRAL	NA	1	FRMPD4
TCGA.AG.3906.01A	23	12157023	12738551	18	0.0342	NEUTRAL	NA	1	FRMPD4
TCGA.D5.6923	23	12291836	52668212	10175	0.2694	NEUTRAL	NA	238	Too-Many
TCGA.AG.A00C.01A	23	12516787	12885618	24	0.2401	NEUTRAL	NA	3	"FRMPD4,PRPS2,TLR7"
TCGA.AG.A02G.01A	23	12627790	155239443	5306	0.2803	NEUTRAL	NA	780	Too-Many
TCGA.CK.5914.01A	23	12734151	12994874	19	0.1784	NEUTRAL	NA	5	"FRMPD4,PRPS2,TLR7,TLR8,TMSB4X"
TCGA.AG.3909.01A	23	12738551	12937143	12	-0.1523	NEUTRAL	NA	4	"FRMPD4,PRPS2,TLR7,TLR8"
TCGA.AA.A00N.01A	23	12809566	12828114	4	-0.4683	NEUTRAL	NA	1	PRPS2
TCGA.AA.A010.01A	23	12837584	14910807	91	-0.2616	NEUTRAL	NA	16	"ATXN3L,EGFL6,FAM9C,FANCB,GEMIN8,GLRA2,GPM6B,MOSPD2,OFD1,PRPS2,RAB9A,TCEANC,TLR7,TLR8,TMSB4X,TRAPPC2"
TCGA.AG.3906.01A	23	12837584	16635225	210	0.0238	NEUTRAL	NA	30	"ACE2,AP1S2,ASB11,ASB9,ATXN3L,BMX,CA5B,CTPS2,EGFL6,FAM9C,FANCB,FIGF,GEMIN8,GLRA2,GPM6B,GRPR,MAGEB17,MOSPD2,OFD1,PIGA,PIR,PRPS2,RAB9A,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,ZRSR2"
TCGA.AA.3866	23	12908781	34382962	6196	-0.5141	NEUTRAL	NA	92	"ACE2,ACOT9,ADGRG2,AP1S2,APOO,ARX,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CNKSR2,CTPS2,CXorf21,CXorf23,CXorf58,DCAF8L1,DCAF8L2,DDX53,DMD,EGFL6,EIF1AX,EIF2S3,FAM47A,FAM9C,FANCB,FIGF,FTHL17,GEMIN8,GK,GLRA2,GPM6B,GRPR,IL1RAPL1,KLHL15,KLHL34,MAGEB1,MAGEB10,MAGEB17,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAP3K15,MAP7D2,MBTPS2,MOSPD2,NHS,NR0B1,OFD1,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,PIGA,PIR,POLA1,PPEF1,PRDX4,PTCHD1,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SAT1,SCML1,SCML2,SH3KBP1,SMPX,SMS,SUPT20HL1,SUPT20HL2,SYAP1,TAB3,TCEANC,TLR8,TMEM27,TMSB4X,TRAPPC2,TXLNG,YY2,ZFX,ZNF645,ZRSR2"
TCGA.AA.A00Q.01A	23	12994330	13061791	7	-0.0126	NEUTRAL	NA	2	"FAM9C,TMSB4X"
TCGA.AA.3812	23	13048984	13060035	7	-0.4068	NEUTRAL	NA	1	FAM9C
TCGA.CK.4948.01B	23	13061791	13618045	7	0.324	NEUTRAL	NA	3	"ATXN3L,EGFL6,FAM9C"
TCGA.CM.6170	23	13063219	19460589	1612	0.0936	NEUTRAL	NA	42	"ACE2,ADGRG2,AP1S2,ASB11,ASB9,ATXN3L,BEND2,BMX,CA5B,CDKL5,CTPS2,EGFL6,FANCB,FIGF,GEMIN8,GLRA2,GPM6B,GRPR,MAGEB17,MAP3K15,MOSPD2,NHS,OFD1,PDHA1,PHKA2,PIGA,PIR,PPEF1,RAB9A,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SYAP1,TCEANC,TMEM27,TRAPPC2,TXLNG,ZRSR2"
TCGA.AA.3494	23	13102109	88443281	15439	0.364	NEUTRAL	NA	385	Too-Many
TCGA.CK.4948.01B	23	13621388	30577520	761	0.0248	NEUTRAL	NA	83	"ACE2,ACOT9,ADGRG2,AP1S2,APOO,ARX,ASB11,ASB9,BEND2,BMX,CA5B,CDKL5,CNKSR2,CTPS2,CXorf21,CXorf23,CXorf58,DCAF8L1,DCAF8L2,DDX53,EGFL6,EIF1AX,EIF2S3,FANCB,FIGF,GEMIN8,GLRA2,GPM6B,GRPR,IL1RAPL1,KLHL15,KLHL34,MAGEB1,MAGEB10,MAGEB17,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAP3K15,MAP7D2,MBTPS2,MOSPD2,NHS,NR0B1,OFD1,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,PIGA,PIR,POLA1,PPEF1,PRDX4,PTCHD1,RAB9A,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SAT1,SCML1,SCML2,SH3KBP1,SMPX,SMS,SUPT20HL1,SUPT20HL2,SYAP1,TCEANC,TMEM27,TRAPPC2,TXLNG,YY2,ZFX,ZNF645,ZRSR2"
TCGA.D5.6539	23	13724923	53944920	9780	-0.1218	NEUTRAL	NA	245	Too-Many
TCGA.CK.5914.01A	23	13726826	13774650	17	-0.055	NEUTRAL	NA	3	"OFD1,RAB9A,TRAPPC2"
TCGA.AG.A00C.01A	23	13732484	18972322	356	0.3259	NEUTRAL	NA	35	"ACE2,AP1S2,ASB11,ASB9,BEND2,BMX,CA5B,CDKL5,CTPS2,FANCB,FIGF,GEMIN8,GLRA2,GPM6B,GRPR,MAGEB17,MOSPD2,NHS,OFD1,PHKA2,PIGA,PIR,PPEF1,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SYAP1,TMEM27,TRAPPC2,TXLNG,ZRSR2"
TCGA.AG.3909.01A	23	13769351	14871113	40	0.087	NEUTRAL	NA	5	"FANCB,GEMIN8,GLRA2,GPM6B,OFD1"
TCGA.AA.A00N.01A	23	14868580	15276928	25	-0.136	NEUTRAL	NA	3	"ASB9,FANCB,MOSPD2"
TCGA.AG.3909.01A	23	14910807	15333500	28	0.0508	NEUTRAL	NA	3	"ASB11,ASB9,MOSPD2"
TCGA.AA.A010.01A	23	15262581	15270335	4	-0.0553	NEUTRAL	NA	1	ASB9
TCGA.CK.5914.01A	23	15262581	15320793	13	0.2844	NEUTRAL	NA	2	"ASB11,ASB9"
TCGA.AA.A010.01A	23	15272812	15349311	16	0.3065	NEUTRAL	NA	3	"ASB11,ASB9,PIGA"
TCGA.AA.A00N.01A	23	15320793	15381180	14	-0.3293	NEUTRAL	NA	3	"ASB11,FIGF,PIGA"
TCGA.CK.5914.01A	23	15332468	15371153	10	-0.4329	NEUTRAL	NA	3	"ASB11,FIGF,PIGA"
TCGA.AA.A010.01A	23	15364216	15509246	16	-0.0653	NEUTRAL	NA	2	"FIGF,PIR"
TCGA.CK.5914.01A	23	15373267	15509246	13	0.3283	NEUTRAL	NA	2	"FIGF,PIR"
TCGA.AG.3909.01A	23	15376088	15618822	48	0.1867	NEUTRAL	NA	4	"ACE2,BMX,FIGF,PIR"
TCGA.CK.5914.01A	23	15610321	15706854	10	-0.3103	NEUTRAL	NA	2	"ACE2,TMEM27"
TCGA.AA.A010.01A	23	15610321	15817934	25	-0.0314	NEUTRAL	NA	4	"ACE2,CA5B,TMEM27,ZRSR2"
TCGA.AZ.4684.01A	23	15657648	15840857	29	-0.0974	NEUTRAL	NA	3	"CA5B,TMEM27,ZRSR2"
TCGA.CK.5914.01A	23	15709294	15808550	13	0.2355	NEUTRAL	NA	1	CA5B
TCGA.AG.3909.01A	23	15768126	15822176	12	0.0142	NEUTRAL	NA	2	"CA5B,ZRSR2"
TCGA.CK.5914.01A	23	15808995	15870430	17	-0.3241	NEUTRAL	NA	2	"AP1S2,ZRSR2"
TCGA.AA.3930.01A	23	15833770	15863460	9	-0.2849	NEUTRAL	NA	2	"AP1S2,ZRSR2"
TCGA.AA.3930.01A	23	15864009	17710403	75	0.1823	NEUTRAL	NA	10	"AP1S2,CTPS2,GRPR,MAGEB17,NHS,RBBP7,REPS2,S100G,SYAP1,TXLNG"
TCGA.AA.A01S	23	15906027	19885869	806	0.00115	NEUTRAL	NA	21	"ADGRG2,BEND2,CDKL5,CTPS2,GRPR,MAGEB17,MAP3K15,NHS,PDHA1,PHKA2,PPEF1,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SH3KBP1,SYAP1,TXLNG"
TCGA.AG.3732	23	15921234	154925044	30692	0.1019	NEUTRAL	NA	750	Too-Many
TCGA.AA.A010.01A	23	16142080	16859544	42	-0.312	NEUTRAL	NA	6	"CTPS2,GRPR,MAGEB17,S100G,SYAP1,TXLNG"
TCGA.CK.5914.01A	23	16142080	16870151	45	0.3667	NEUTRAL	NA	7	"CTPS2,GRPR,MAGEB17,RBBP7,S100G,SYAP1,TXLNG"
TCGA.AZ.4684.01A	23	16142080	16871776	49	-0.1074	NEUTRAL	NA	7	"CTPS2,GRPR,MAGEB17,RBBP7,S100G,SYAP1,TXLNG"
TCGA.AG.3909.01A	23	16142080	19362086	214	0.0169	NEUTRAL	NA	19	"ADGRG2,BEND2,CDKL5,CTPS2,GRPR,MAGEB17,NHS,PDHA1,PHKA2,PPEF1,RAI2,RBBP7,REPS2,RS1,S100G,SCML1,SCML2,SYAP1,TXLNG"
TCGA.3L.AA1B	23	16147120	16995147	187	0.0941	NEUTRAL	NA	8	"CTPS2,GRPR,MAGEB17,RBBP7,REPS2,S100G,SYAP1,TXLNG"
TCGA.AG.A01W.01A	23	16567138	16598570	5	-0.424	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	23	16606363	16621131	5	0.3197	NEUTRAL	NA	1	CTPS2
TCGA.AA.A00N.01A	23	16608850	16863904	39	0.0733	NEUTRAL	NA	5	"CTPS2,RBBP7,S100G,SYAP1,TXLNG"
TCGA.AG.A01W.01A	23	16626230	16757629	16	-0.3018	NEUTRAL	NA	3	"CTPS2,S100G,SYAP1"
TCGA.AG.3906.01A	23	16638330	16871776	40	0.3342	NEUTRAL	NA	5	"CTPS2,RBBP7,S100G,SYAP1,TXLNG"
TCGA.AF.2689	23	16698089	16762001	14	-0.4004	NEUTRAL	NA	2	"CTPS2,SYAP1"
TCGA.AG.3611.01A	23	16717009	44896820	888	0.158	NEUTRAL	NA	101	Too-Many
TCGA.AG.A01W.01A	23	16760631	18731885	127	0.2855	NEUTRAL	NA	12	"BEND2,CDKL5,NHS,PPEF1,RAI2,RBBP7,REPS2,RS1,SCML1,SCML2,SYAP1,TXLNG"
TCGA.AF.2689	23	16762157	56635253	9321	0.2437	NEUTRAL	NA	246	Too-Many
TCGA.AG.4009.01A	23	16863904	16887150	10	-0.028	NEUTRAL	NA	1	RBBP7
TCGA.CK.5914.01A	23	16870488	17024296	10	-0.2723	NEUTRAL	NA	2	"RBBP7,REPS2"
TCGA.AZ.4684.01A	23	16875665	18599984	74	0.3735	NEUTRAL	NA	8	"BEND2,CDKL5,NHS,RAI2,RBBP7,REPS2,SCML1,SCML2"
TCGA.AG.3906.01A	23	17024296	17746792	26	-0.0537	NEUTRAL	NA	2	"NHS,REPS2"
TCGA.AA.A010.01A	23	17024296	18779571	96	-0.4081	NEUTRAL	NA	9	"BEND2,CDKL5,NHS,PPEF1,RAI2,REPS2,RS1,SCML1,SCML2"
TCGA.AA.3930.01A	23	17737434	17746792	7	-0.1768	NEUTRAL	NA	1	NHS
TCGA.CK.5914.01A	23	17737434	18528856	45	0.1064	NEUTRAL	NA	6	"BEND2,CDKL5,NHS,RAI2,SCML1,SCML2"
TCGA.AG.3906.01A	23	17749948	18183127	10	-0.4215	NEUTRAL	NA	4	"BEND2,NHS,RAI2,SCML1"
TCGA.AA.A01Q.01A	23	17762227	17771330	7	-0.502	NEUTRAL	NA	1	SCML1
TCGA.AA.A00N.01A	23	17762227	18966817	105	0.3411	NEUTRAL	NA	8	"BEND2,CDKL5,PHKA2,PPEF1,RAI2,RS1,SCML1,SCML2"
TCGA.AA.3930.01A	23	17818551	18646454	46	-0.1431	NEUTRAL	NA	4	"BEND2,CDKL5,RAI2,SCML2"
TCGA.AA.A01Q.01A	23	17818551	18845386	71	0.1718	NEUTRAL	NA	6	"BEND2,CDKL5,PPEF1,RAI2,RS1,SCML2"
TCGA.A6.2678	23	18050121	154925044	30402	0.036	NEUTRAL	NA	739	Too-Many
TCGA.AG.3612	23	18064951	41696622	6645	0.0074	NEUTRAL	NA	86	"ACOT9,ADGRG2,APOO,ARX,ATP6AP2,BCOR,BEND2,CASK,CDKL5,CFAP47,CNKSR2,CXorf21,CXorf23,CXorf38,CXorf58,CYBB,DCAF8L1,DCAF8L2,DDX3X,DDX53,DMD,DYNLT3,EIF1AX,EIF2S3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,GPR34,GPR82,HYPM,IL1RAPL1,KLHL15,KLHL34,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAP3K15,MAP7D2,MBTPS2,MED14,MED14OS,MID1IP1,MPC1L,NR0B1,NYX,OTC,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,POLA1,PPEF1,PRDX4,PRRG1,PTCHD1,RPGR,RPS6KA3,RS1,SAT1,SCML2,SH3KBP1,SMPX,SMS,SRPX,SUPT20HL1,SUPT20HL2,SYTL5,TAB3,TMEM47,TSPAN7,USP9X,XK,YY2,ZFX,ZNF645"
TCGA.F5.6465	23	18080892	61948488	9343	0.0192	NEUTRAL	NA	245	Too-Many
TCGA.AG.3906.01A	23	18189072	21444563	228	0.0764	NEUTRAL	NA	15	"ADGRG2,BEND2,CDKL5,CNKSR2,CXorf23,EIF1AX,MAP3K15,MAP7D2,PDHA1,PHKA2,PPEF1,RPS6KA3,RS1,SCML2,SH3KBP1"
TCGA.AZ.4684.01A	23	18602352	21444563	202	-0.0237	NEUTRAL	NA	13	"ADGRG2,CDKL5,CNKSR2,CXorf23,EIF1AX,MAP3K15,MAP7D2,PDHA1,PHKA2,PPEF1,RPS6KA3,RS1,SH3KBP1"
TCGA.CK.5914.01A	23	18626882	19613003	125	0.1142	NEUTRAL	NA	8	"ADGRG2,CDKL5,MAP3K15,PDHA1,PHKA2,PPEF1,RS1,SH3KBP1"
TCGA.AA.3930.01A	23	18660097	30255122	423	0.1309	NEUTRAL	NA	45	"ACOT9,ADGRG2,APOO,ARX,CDKL5,CNKSR2,CXorf23,CXorf58,DCAF8L1,DCAF8L2,DDX53,EIF1AX,EIF2S3,IL1RAPL1,KLHL15,KLHL34,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB5,MAGEB6,MAP3K15,MAP7D2,MBTPS2,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,POLA1,PPEF1,PRDX4,PTCHD1,RPS6KA3,RS1,SAT1,SH3KBP1,SMPX,SMS,SUPT20HL1,SUPT20HL2,YY2,ZFX,ZNF645"
TCGA.AG.A01W.01A	23	18734395	19611815	112	-0.0976	NEUTRAL	NA	6	"ADGRG2,MAP3K15,PDHA1,PHKA2,PPEF1,SH3KBP1"
TCGA.AA.A010.01A	23	18797089	19001914	41	0.1098	NEUTRAL	NA	2	"PHKA2,PPEF1"
TCGA.AA.A01Q.01A	23	18911556	18966817	27	-0.259	NEUTRAL	NA	1	PHKA2
TCGA.AA.A02H.01A	23	18923838	20187468	137	0.2498	NEUTRAL	NA	9	"ADGRG2,CXorf23,EIF1AX,MAP3K15,MAP7D2,PDHA1,PHKA2,RPS6KA3,SH3KBP1"
TCGA.AA.A01C.01A	23	18923838	21392949	148	0.2124	NEUTRAL	NA	10	"ADGRG2,CNKSR2,CXorf23,EIF1AX,MAP3K15,MAP7D2,PDHA1,PHKA2,RPS6KA3,SH3KBP1"
TCGA.AA.A017.01A	23	18923838	30852131	406	-0.0358	NEUTRAL	NA	48	"ACOT9,ADGRG2,APOO,ARX,CNKSR2,CXorf21,CXorf23,CXorf58,DCAF8L1,DCAF8L2,DDX53,EIF1AX,EIF2S3,GK,IL1RAPL1,KLHL15,KLHL34,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAP3K15,MAP7D2,MBTPS2,NR0B1,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,POLA1,PRDX4,PTCHD1,RPS6KA3,SAT1,SH3KBP1,SMPX,SMS,SUPT20HL1,SUPT20HL2,TAB3,YY2,ZFX,ZNF645"
TCGA.AA.A01Q.01A	23	18969180	24712011	288	0.1217	NEUTRAL	NA	31	"ACOT9,ADGRG2,APOO,CNKSR2,CXorf23,CXorf58,DDX53,EIF1AX,EIF2S3,KLHL15,KLHL34,MAP3K15,MAP7D2,MBTPS2,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,PRDX4,PTCHD1,RPS6KA3,SAT1,SH3KBP1,SMPX,SMS,SUPT20HL1,SUPT20HL2,YY2,ZFX,ZNF645"
TCGA.AA.A010.01A	23	19008933	19854196	77	-0.332	NEUTRAL	NA	4	"ADGRG2,MAP3K15,PDHA1,SH3KBP1"
TCGA.AA.A00N.01A	23	19024072	19362086	19	0.2852	NEUTRAL	NA	2	"ADGRG2,PDHA1"
TCGA.AG.A00C.01A	23	19027717	19086803	15	0.2931	NEUTRAL	NA	1	ADGRG2
TCGA.AA.3862.01A	23	19367363	20134821	78	-0.0669	NEUTRAL	NA	5	"CXorf23,MAP3K15,MAP7D2,PDHA1,SH3KBP1"
TCGA.AA.3861.01A	23	19372555	20082793	71	0.1724	NEUTRAL	NA	5	"CXorf23,MAP3K15,MAP7D2,PDHA1,SH3KBP1"
TCGA.AG.A00C.01A	23	19387133	19724961	33	0.2322	NEUTRAL	NA	2	"MAP3K15,SH3KBP1"
TCGA.AG.3909.01A	23	19387133	19854196	36	0.3084	NEUTRAL	NA	2	"MAP3K15,SH3KBP1"
TCGA.AA.A02R.01A	23	19390730	29973197	301	-0.0696	NEUTRAL	NA	37	"ACOT9,APOO,ARX,CNKSR2,CXorf23,CXorf58,DCAF8L1,DCAF8L2,DDX53,EIF1AX,EIF2S3,IL1RAPL1,KLHL15,KLHL34,MAGEB10,MAGEB18,MAGEB5,MAGEB6,MAP3K15,MAP7D2,MBTPS2,PCYT1B,PDK3,PHEX,POLA1,PRDX4,PTCHD1,RPS6KA3,SAT1,SH3KBP1,SMPX,SMS,SUPT20HL1,SUPT20HL2,YY2,ZFX,ZNF645"
TCGA.CM.6170	23	19472244	19486194	13	-0.3732	NEUTRAL	NA	1	MAP3K15
TCGA.A6.6142	23	19503574	154925044	30102	-0.0942	NEUTRAL	NA	731	Too-Many
TCGA.CM.6170	23	19504272	19547659	7	-0.4049	NEUTRAL	NA	1	MAP3K15
TCGA.CM.6170	23	19558122	87113644	13540	0.0598	NEUTRAL	NA	342	Too-Many
TCGA.AG.A01W.01A	23	19623600	21398755	65	0.2424	NEUTRAL	NA	6	"CNKSR2,CXorf23,EIF1AX,MAP7D2,RPS6KA3,SH3KBP1"
TCGA.AA.A02E.01A	23	19701914	150911878	4510	0.1439	NEUTRAL	NA	640	Too-Many
TCGA.EI.6511	23	19733808	20086381	41	0.0584	NEUTRAL	NA	3	"CXorf23,MAP7D2,SH3KBP1"
TCGA.CK.5914.01A	23	19758783	20033302	22	0.1028	NEUTRAL	NA	3	"CXorf23,MAP7D2,SH3KBP1"
TCGA.AA.A00N.01A	23	19935338	20034173	18	-0.3294	NEUTRAL	NA	2	"CXorf23,MAP7D2"
TCGA.AG.3909.01A	23	20028872	20082793	15	0.2728	NEUTRAL	NA	1	MAP7D2
TCGA.AG.A00C.01A	23	20043022	20134821	10	0.0651	NEUTRAL	NA	1	MAP7D2
TCGA.AA.A00N.01A	23	20159674	21450758	26	0.3328	NEUTRAL	NA	3	"CNKSR2,EIF1AX,RPS6KA3"
TCGA.A6.3808.01A	23	20159674	23701709	110	-0.1155	NEUTRAL	NA	13	"CNKSR2,DDX53,EIF1AX,KLHL34,MBTPS2,PHEX,PRDX4,PTCHD1,RPS6KA3,SMPX,SMS,YY2,ZNF645"
TCGA.AG.3909.01A	23	20173464	20182969	5	-0.2798	NEUTRAL	NA	1	RPS6KA3
TCGA.AG.A00C.01A	23	20181024	21627172	38	0.258	NEUTRAL	NA	2	"CNKSR2,RPS6KA3"
TCGA.AG.3909.01A	23	20185670	21659554	37	0.08	NEUTRAL	NA	2	"CNKSR2,RPS6KA3"
TCGA.AA.A02H.01A	23	20211554	20213146	3	-0.1439	NEUTRAL	NA	1	RPS6KA3
TCGA.AA.3844	23	20654916	21691314	100	0.0047	NEUTRAL	NA	2	"CNKSR2,KLHL34"
TCGA.DY.A1DD	23	21094703	39703797	5668	0.0168	NEUTRAL	NA	60	"ACOT9,APOO,ARX,CFAP47,CNKSR2,CXorf21,CXorf58,CYBB,DCAF8L1,DCAF8L2,DDX53,DMD,DYNLT3,EIF2S3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,HYPM,IL1RAPL1,KLHL15,KLHL34,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MBTPS2,MID1IP1,NR0B1,OTC,PCYT1B,PDK3,PHEX,POLA1,PRDX4,PRRG1,PTCHD1,RPGR,SAT1,SMPX,SMS,SRPX,SUPT20HL1,SUPT20HL2,SYTL5,TAB3,TMEM47,TSPAN7,XK,YY2,ZFX,ZNF645"
TCGA.F5.6811.01A	23	21444473	21489456	4	0.259	NEUTRAL	NA	1	CNKSR2
TCGA.AG.3906.01A	23	21450758	21887607	33	-0.2301	NEUTRAL	NA	5	"CNKSR2,KLHL34,MBTPS2,SMPX,YY2"
TCGA.F5.6811.01A	23	21491238	37438437	416	-0.3338	NEUTRAL	NA	50	"ACOT9,APOO,ARX,CFAP47,CNKSR2,CXorf21,CXorf58,DCAF8L1,DCAF8L2,DDX53,DMD,EIF2S3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,IL1RAPL1,KLHL15,KLHL34,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MBTPS2,NR0B1,PCYT1B,PDK3,PHEX,POLA1,PRDX4,PRRG1,PTCHD1,SAT1,SMPX,SMS,SUPT20HL1,SUPT20HL2,TAB3,TMEM47,YY2,ZFX,ZNF645"
TCGA.AA.A01C.01A	23	21619335	30861028	238	0.1791	NEUTRAL	NA	39	"ACOT9,APOO,ARX,CNKSR2,CXorf21,CXorf58,DCAF8L1,DCAF8L2,DDX53,EIF2S3,GK,IL1RAPL1,KLHL15,KLHL34,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MBTPS2,NR0B1,PCYT1B,PDK3,PHEX,POLA1,PRDX4,PTCHD1,SAT1,SMPX,SMS,SUPT20HL1,SUPT20HL2,TAB3,YY2,ZFX,ZNF645"
TCGA.CK.5914.01A	23	21659554	21857791	8	-0.032	NEUTRAL	NA	4	"CNKSR2,KLHL34,MBTPS2,SMPX"
TCGA.AG.A01W.01A	23	21665561	23610388	60	0.2282	NEUTRAL	NA	10	"CNKSR2,DDX53,KLHL34,MBTPS2,PHEX,PTCHD1,SMPX,SMS,YY2,ZNF645"
TCGA.AZ.4684.01A	23	21673933	23693090	63	0.1462	NEUTRAL	NA	10	"DDX53,KLHL34,MBTPS2,PHEX,PRDX4,PTCHD1,SMPX,SMS,YY2,ZNF645"
TCGA.AA.A010.01A	23	21673933	24712011	149	-0.2984	NEUTRAL	NA	21	"ACOT9,APOO,CXorf58,DDX53,EIF2S3,KLHL15,KLHL34,MBTPS2,PCYT1B,PDK3,PHEX,PRDX4,PTCHD1,SAT1,SMPX,SMS,SUPT20HL1,SUPT20HL2,YY2,ZFX,ZNF645"
TCGA.AA.A01S	23	21857590	38976466	5353	0.00215	NEUTRAL	NA	57	"ACOT9,APOO,ARX,CFAP47,CXorf21,CXorf58,CYBB,DCAF8L1,DCAF8L2,DDX53,DMD,DYNLT3,EIF2S3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,HYPM,IL1RAPL1,KLHL15,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MBTPS2,MID1IP1,NR0B1,OTC,PCYT1B,PDK3,PHEX,POLA1,PRDX4,PRRG1,PTCHD1,RPGR,SAT1,SMS,SRPX,SUPT20HL1,SUPT20HL2,SYTL5,TAB3,TMEM47,TSPAN7,XK,YY2,ZFX,ZNF645"
TCGA.AA.A02H.01A	23	21861241	30864040	233	0.24	NEUTRAL	NA	36	"ACOT9,APOO,ARX,CXorf21,CXorf58,DCAF8L1,DCAF8L2,DDX53,EIF2S3,GK,IL1RAPL1,KLHL15,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MBTPS2,NR0B1,PCYT1B,PDK3,PHEX,POLA1,PRDX4,PTCHD1,SAT1,SMS,SUPT20HL1,SUPT20HL2,TAB3,YY2,ZFX,ZNF645"
TCGA.AG.A00C.01A	23	21874562	23685666	49	0.213	NEUTRAL	NA	8	"DDX53,MBTPS2,PHEX,PRDX4,PTCHD1,SMS,YY2,ZNF645"
TCGA.CK.5914.01A	23	21886538	22003200	14	0.0502	NEUTRAL	NA	2	"MBTPS2,SMS"
TCGA.AG.3909.01A	23	21896111	23410661	44	0.1471	NEUTRAL	NA	6	"DDX53,MBTPS2,PHEX,PTCHD1,SMS,ZNF645"
TCGA.AG.3906.01A	23	21896111	24225797	101	0.1553	NEUTRAL	NA	14	"ACOT9,APOO,CXorf58,DDX53,EIF2S3,KLHL15,MBTPS2,PHEX,PRDX4,PTCHD1,SAT1,SMS,ZFX,ZNF645"
TCGA.CK.5914.01A	23	22263392	24380876	77	-0.1984	NEUTRAL	NA	13	"ACOT9,APOO,CXorf58,DDX53,EIF2S3,KLHL15,PHEX,PRDX4,PTCHD1,SAT1,SUPT20HL2,ZFX,ZNF645"
TCGA.AA.3844	23	22313257	23494933	593	0.1978	NEUTRAL	NA	2	"DDX53,PTCHD1"
TCGA.AG.3898	23	22796905	22806717	4	-0.1838	NEUTRAL	NA	0	None
TCGA.5M.AAT4	23	22828077	22832513	5	-0.229	NEUTRAL	NA	0	None
TCGA.DM.A1D8	23	22856078	22880692	18	-0.3337	NEUTRAL	NA	0	None
TCGA.DM.A1D8	23	22883546	154925044	29211	0.3129	NEUTRAL	NA	717	Too-Many
TCGA.AA.3848	23	23338261	154925044	29041	0.3285	NEUTRAL	NA	716	Too-Many
TCGA.AG.A01W.01A	23	23611631	23662293	15	-0.2538	NEUTRAL	NA	0	None
TCGA.AA.A00N.01A	23	23689596	24073024	44	-0.4902	NEUTRAL	NA	6	"ACOT9,APOO,CXorf58,KLHL15,PRDX4,SAT1"
TCGA.AZ.4684.01A	23	23697235	24075489	44	-0.1619	NEUTRAL	NA	7	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,PRDX4,SAT1"
TCGA.AG.3909.01A	23	23704051	24073024	37	-0.4045	NEUTRAL	NA	6	"ACOT9,APOO,CXorf58,KLHL15,PRDX4,SAT1"
TCGA.AG.3891.01A	23	23704051	24228303	54	0.2769	NEUTRAL	NA	8	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,PRDX4,SAT1,ZFX"
TCGA.AG.A01J.01A	23	23724697	47032463	658	0.2808	NEUTRAL	NA	78	"ACOT9,APOO,ARX,ATP6AP2,BCOR,CASK,CFAP47,CHST7,CXorf21,CXorf36,CXorf38,CXorf58,CYBB,DCAF8L1,DCAF8L2,DDX3X,DMD,DUSP21,DYNLT3,EFHC2,EIF2S3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,FUNDC1,GK,GPR34,GPR82,HYPM,IL1RAPL1,JADE3,KDM6A,KLHL15,KRBOX4,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NDUFB11,NR0B1,NYX,OTC,PCYT1B,PDK3,POLA1,PRRG1,RBM10,RGN,RP2,RPGR,SAT1,SLC9A7,SRPX,SUPT20HL1,SUPT20HL2,SYTL5,TAB3,TMEM47,TSPAN7,USP9X,XK,ZFX,ZNF674"
TCGA.AG.A01W.01A	23	23768322	23867216	15	-0.1769	NEUTRAL	NA	2	"APOO,SAT1"
TCGA.AG.A01W.01A	23	23915933	38030706	341	0.3124	NEUTRAL	NA	43	"APOO,ARX,CFAP47,CXorf21,CXorf58,CYBB,DCAF8L1,DCAF8L2,DMD,DYNLT3,EIF2S3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,HYPM,IL1RAPL1,KLHL15,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,PCYT1B,PDK3,POLA1,PRRG1,SRPX,SUPT20HL1,SUPT20HL2,SYTL5,TAB3,TMEM47,XK,ZFX"
TCGA.AG.3909.01A	23	24094773	24228303	8	0.1156	NEUTRAL	NA	2	"EIF2S3,ZFX"
TCGA.AZ.4684.01A	23	24190792	24226970	6	-0.1985	NEUTRAL	NA	1	ZFX
TCGA.AA.3844	23	24199621	24222254	4	0.023	NEUTRAL	NA	1	ZFX
TCGA.AG.3906.01A	23	24226298	24516937	10	-0.1726	NEUTRAL	NA	4	"PDK3,SUPT20HL1,SUPT20HL2,ZFX"
TCGA.AZ.4684.01A	23	24228303	31164361	136	0.2394	NEUTRAL	NA	24	"ARX,CXorf21,DCAF8L1,DCAF8L2,DMD,FTHL17,GK,IL1RAPL1,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,PCYT1B,PDK3,POLA1,SUPT20HL1,SUPT20HL2,TAB3,ZFX"
TCGA.AA.A00L.01A	23	24328949	24483523	3	0.0104	NEUTRAL	NA	3	"PDK3,SUPT20HL1,SUPT20HL2"
TCGA.AG.3891.01A	23	24328949	65247825	1552	-0.0228	NEUTRAL	NA	223	Too-Many
TCGA.AG.3909.01A	23	24380876	24690642	22	0.2101	NEUTRAL	NA	3	"PCYT1B,PDK3,SUPT20HL1"
TCGA.AG.A00C.01A	23	24380876	24690642	21	0.2413	NEUTRAL	NA	3	"PCYT1B,PDK3,SUPT20HL1"
TCGA.AA.3660	23	24409050	154925044	28677	0.3553	NEUTRAL	NA	705	Too-Many
TCGA.A6.3808.01A	23	24483523	25031020	62	0.1655	NEUTRAL	NA	4	"ARX,PCYT1B,PDK3,POLA1"
TCGA.AG.3906.01A	23	24521426	24744039	29	0.2998	NEUTRAL	NA	3	"PCYT1B,PDK3,POLA1"
TCGA.AA.A01Q.01A	23	24717525	24734947	7	-0.4959	NEUTRAL	NA	1	POLA1
TCGA.AG.4009.01A	23	24717525	24744039	12	-0.211	NEUTRAL	NA	1	POLA1
TCGA.AA.A01Q.01A	23	24735369	31986409	128	0.1192	NEUTRAL	NA	19	"ARX,CXorf21,DCAF8L1,DCAF8L2,DMD,FTHL17,GK,IL1RAPL1,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,POLA1,TAB3"
TCGA.AG.3906.01A	23	24745043	24906073	22	-0.1576	NEUTRAL	NA	1	POLA1
TCGA.AG.4009.01A	23	24745043	44879806	489	0.3593	NEUTRAL	NA	57	"ARX,ATP6AP2,BCOR,CASK,CFAP47,CXorf21,CXorf38,CYBB,DCAF8L1,DCAF8L2,DDX3X,DMD,DUSP21,DYNLT3,EFHC2,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,FUNDC1,GK,GPR34,GPR82,HYPM,IL1RAPL1,KDM6A,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NR0B1,NYX,OTC,POLA1,PRRG1,RPGR,SRPX,SYTL5,TAB3,TMEM47,TSPAN7,USP9X,XK"
TCGA.AA.A00N.01A	23	24745862	31139902	93	0.3518	NEUTRAL	NA	19	"ARX,CXorf21,DCAF8L1,DCAF8L2,DMD,FTHL17,GK,IL1RAPL1,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,POLA1,TAB3"
TCGA.AA.A010.01A	23	24753460	24948522	19	-0.193	NEUTRAL	NA	1	POLA1
TCGA.AG.3909.01A	23	24757471	30268574	49	0.0311	NEUTRAL	NA	13	"ARX,DCAF8L1,DCAF8L2,IL1RAPL1,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,POLA1"
TCGA.AG.A00C.01A	23	24766379	38150590	260	0.2018	NEUTRAL	NA	35	"ARX,CFAP47,CXorf21,CYBB,DCAF8L1,DCAF8L2,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,HYPM,IL1RAPL1,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,POLA1,PRRG1,RPGR,SRPX,SYTL5,TAB3,TMEM47,XK"
TCGA.CK.5914.01A	23	24827954	30746753	70	0.1657	NEUTRAL	NA	16	"ARX,CXorf21,DCAF8L1,DCAF8L2,GK,IL1RAPL1,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,POLA1"
TCGA.AA.A00A.01A	23	24906073	27998502	15	0.1783	NEUTRAL	NA	8	"ARX,DCAF8L1,DCAF8L2,MAGEB10,MAGEB18,MAGEB5,MAGEB6,POLA1"
TCGA.AA.3941	23	25409198	28819991	946	-0.4035	NEUTRAL	NA	7	"DCAF8L1,DCAF8L2,IL1RAPL1,MAGEB10,MAGEB18,MAGEB5,MAGEB6"
TCGA.AA.3982	23	25409198	28824083	932	-0.1725	NEUTRAL	NA	7	"DCAF8L1,DCAF8L2,IL1RAPL1,MAGEB10,MAGEB18,MAGEB5,MAGEB6"
TCGA.AA.3844	23	25409198	28853203	967	0.1156	NEUTRAL	NA	7	"DCAF8L1,DCAF8L2,IL1RAPL1,MAGEB10,MAGEB18,MAGEB5,MAGEB6"
TCGA.CI.6619	23	25745080	154925044	27949	0.1743	NEUTRAL	NA	701	Too-Many
TCGA.AA.A010.01A	23	26157052	36091214	178	-0.3917	NEUTRAL	NA	22	"CFAP47,CXorf21,DCAF8L1,DCAF8L2,DMD,FAM47A,FAM47B,FTHL17,GK,IL1RAPL1,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,TAB3,TMEM47"
TCGA.AG.3906.01A	23	26157052	44879806	468	-0.0138	NEUTRAL	NA	55	"ATP6AP2,BCOR,CASK,CFAP47,CXorf21,CXorf38,CYBB,DCAF8L1,DCAF8L2,DDX3X,DMD,DUSP21,DYNLT3,EFHC2,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,FUNDC1,GK,GPR34,GPR82,HYPM,IL1RAPL1,KDM6A,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NR0B1,NYX,OTC,PRRG1,RPGR,SRPX,SYTL5,TAB3,TMEM47,TSPAN7,USP9X,XK"
TCGA.AA.3844	23	28857682	30532863	497	0.1469	NEUTRAL	NA	6	"IL1RAPL1,MAGEB1,MAGEB2,MAGEB3,MAGEB4,NR0B1"
TCGA.AA.3850	23	28865573	30454663	453	-0.41605	NEUTRAL	NA	6	"IL1RAPL1,MAGEB1,MAGEB2,MAGEB3,MAGEB4,NR0B1"
TCGA.AA.3982	23	28865573	37243556	2419	-0.2449	NEUTRAL	NA	19	"CFAP47,CXorf21,DMD,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,IL1RAPL1,MAGEB1,MAGEB16,MAGEB2,MAGEB3,MAGEB4,NR0B1,PRRG1,TAB3,TMEM47"
TCGA.AA.3941	23	28865573	37812543	2615	-0.3663	NEUTRAL	NA	23	"CFAP47,CXorf21,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,IL1RAPL1,LANCL3,MAGEB1,MAGEB16,MAGEB2,MAGEB3,MAGEB4,NR0B1,PRRG1,TAB3,TMEM47,XK"
TCGA.D5.6928	23	28877215	154925044	27214	0.0693	NEUTRAL	NA	695	Too-Many
TCGA.AA.3524	23	29909157	154925044	26717	-0.0376	NEUTRAL	NA	695	Too-Many
TCGA.AA.3930.01A	23	30260202	37553498	192	-0.159	NEUTRAL	NA	18	"CFAP47,CXorf21,DMD,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,LANCL3,MAGEB1,MAGEB16,MAGEB4,NR0B1,PRRG1,TAB3,TMEM47,XK"
TCGA.AA.A02R.01A	23	30260202	155239443	4578	-0.0955	NEUTRAL	NA	694	Too-Many
TCGA.AA.3850	23	30459512	31602894	370	-0.15265	NEUTRAL	NA	5	"CXorf21,DMD,FTHL17,GK,TAB3"
TCGA.CK.4948.01B	23	30635540	30696024	6	-0.3168	NEUTRAL	NA	1	GK
TCGA.AG.3909.01A	23	30695429	37670022	169	0.0386	NEUTRAL	NA	15	"CFAP47,CYBB,DMD,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,LANCL3,MAGEB16,PRRG1,TAB3,TMEM47,XK"
TCGA.CK.4948.01B	23	30705585	41200718	369	0.1284	NEUTRAL	NA	31	"ATP6AP2,BCOR,CFAP47,CXorf38,CYBB,DDX3X,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,HYPM,LANCL3,MAGEB16,MED14,MED14OS,MID1IP1,MPC1L,OTC,PRRG1,RPGR,SRPX,SYTL5,TAB3,TMEM47,TSPAN7,USP9X,XK"
TCGA.AA.A017.01A	23	30861028	31144705	9	0.2626	NEUTRAL	NA	3	"DMD,FTHL17,TAB3"
TCGA.AA.3678	23	30874679	31176845	102	-0.3304	NEUTRAL	NA	3	"DMD,FTHL17,TAB3"
TCGA.AA.3844	23	31046050	31226640	69	0.1341	NEUTRAL	NA	2	"DMD,FTHL17"
TCGA.AG.A00Y.01A	23	31089492	37641307	132	-0.225	NEUTRAL	NA	13	"CFAP47,CYBB,DMD,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,LANCL3,MAGEB16,PRRG1,TMEM47,XK"
TCGA.AG.4021	23	31140295	41602949	3065	0.0482	NEUTRAL	NA	32	"ATP6AP2,BCOR,CASK,CFAP47,CXorf38,CYBB,DDX3X,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,GPR34,GPR82,HYPM,LANCL3,MAGEB16,MED14,MED14OS,MID1IP1,MPC1L,NYX,OTC,PRRG1,RPGR,SRPX,SYTL5,TMEM47,TSPAN7,USP9X,XK"
TCGA.AA.3678	23	31177437	78982772	8334	0.0084	NEUTRAL	NA	281	Too-Many
TCGA.AA.A017.01A	23	31187508	31893263	28	0.0778	NEUTRAL	NA	1	DMD
TCGA.AA.3980.01A	23	31496243	31526262	5	-0.4114	NEUTRAL	NA	1	DMD
TCGA.AA.3844	23	31608474	37295726	1645	0.0646	NEUTRAL	NA	9	"CFAP47,DMD,FAM47A,FAM47B,FAM47C,FTH1P18,MAGEB16,PRRG1,TMEM47"
TCGA.AA.3980.01A	23	31645742	49063429	840	0.1603	NEUTRAL	NA	101	Too-Many
TCGA.AA.A01Q.01A	23	32234981	32632380	32	-0.2035	NEUTRAL	NA	1	DMD
TCGA.AA.A017.01A	23	32490254	34962937	31	-0.0309	NEUTRAL	NA	4	"DMD,FAM47A,FAM47B,TMEM47"
TCGA.AA.A01Q.01A	23	32662199	38664221	138	0.141	NEUTRAL	NA	20	"CFAP47,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,HYPM,LANCL3,MAGEB16,MID1IP1,OTC,PRRG1,RPGR,SRPX,SYTL5,TMEM47,TSPAN7,XK"
TCGA.5M.AAT4	23	32991657	33040340	34	0.1761	NEUTRAL	NA	1	DMD
TCGA.A6.6654	23	33293702	52098737	4090	-0.2456	NEUTRAL	NA	142	Too-Many
TCGA.F4.6459	23	34042253	34070286	14	-0.0686	NEUTRAL	NA	0	None
TCGA.AA.A03J	23	34073424	154925044	25170	0.2577	NEUTRAL	NA	684	Too-Many
TCGA.AA.3866	23	34383551	154925044	25602	-0.2215	NEUTRAL	NA	683	Too-Many
TCGA.G4.6626	23	34519733	88418315	9355	0.3376	NEUTRAL	NA	296	Too-Many
TCGA.AY.A71X	23	35590460	71277576	5587	0.2988	NEUTRAL	NA	238	Too-Many
TCGA.CK.4952.01A	23	35903158	36289314	29	-0.0455	NEUTRAL	NA	1	CFAP47
TCGA.F4.6463	23	36746328	154925044	24338	0.0781	NEUTRAL	NA	679	Too-Many
TCGA.AA.A00N.01A	23	37028436	37518718	7	0.3257	NEUTRAL	NA	4	"FAM47C,FTH1P18,LANCL3,PRRG1"
TCGA.AA.3982	23	37243743	57306179	3702	0.2241	NEUTRAL	NA	180	Too-Many
TCGA.AA.3844	23	37296307	39372518	726	0.3496	NEUTRAL	NA	12	"CYBB,DYNLT3,HYPM,LANCL3,MID1IP1,OTC,PRRG1,RPGR,SRPX,SYTL5,TSPAN7,XK"
TCGA.F5.6811.01A	23	37471891	37553717	13	0.1074	NEUTRAL	NA	2	"LANCL3,XK"
TCGA.F5.6811.01A	23	37554966	63481631	1292	-0.3446	NEUTRAL	NA	185	Too-Many
TCGA.AA.3930.01A	23	37586952	38132583	49	0.1079	NEUTRAL	NA	7	"CYBB,DYNLT3,HYPM,RPGR,SRPX,SYTL5,XK"
TCGA.AA.3850	23	37624250	39190638	562	-0.31595	NEUTRAL	NA	9	"CYBB,DYNLT3,HYPM,MID1IP1,OTC,RPGR,SRPX,SYTL5,TSPAN7"
TCGA.AA.A00N.01A	23	37639264	37705492	15	0.1302	NEUTRAL	NA	2	"CYBB,DYNLT3"
TCGA.AG.A00Y.01A	23	37642692	55043881	1101	0.2234	NEUTRAL	NA	162	Too-Many
TCGA.AA.A010.01A	23	37699768	37893091	7	0.2674	NEUTRAL	NA	3	"DYNLT3,HYPM,SYTL5"
TCGA.AA.A017.01A	23	37699768	47969317	440	0.0069	NEUTRAL	NA	53	"ARAF,ATP6AP2,BCOR,CASK,CDK16,CFP,CHST7,CXorf36,CXorf38,DDX3X,DUSP21,DYNLT3,EFHC2,ELK1,FUNDC1,GPR34,GPR82,HYPM,JADE3,KDM6A,KRBOX4,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NDUFB11,NYX,OTC,RBM10,RGN,RP2,RPGR,SLC9A7,SPACA5,SPACA5B,SRPX,SYN1,SYTL5,TIMP1,TSPAN7,UBA1,USP11,USP9X,UXT,ZNF157,ZNF182,ZNF41,ZNF630,ZNF674,ZNF81"
TCGA.5M.AAT5	23	37789981	46598738	2165	0.0557	NEUTRAL	NA	31	"ATP6AP2,BCOR,CASK,CHST7,CXorf36,CXorf38,DDX3X,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,HYPM,KDM6A,KRBOX4,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NYX,OTC,RPGR,SLC9A7,SRPX,SYTL5,TSPAN7,USP9X,ZNF674"
TCGA.AA.3941	23	37828882	39305425	553	0.0065	NEUTRAL	NA	7	"HYPM,MID1IP1,OTC,RPGR,SRPX,SYTL5,TSPAN7"
TCGA.AG.3909.01A	23	37850055	37985799	17	0.0523	NEUTRAL	NA	2	"HYPM,SYTL5"
TCGA.AA.A010.01A	23	37913428	38135808	29	-0.5099	NEUTRAL	NA	3	"RPGR,SRPX,SYTL5"
TCGA.AA.3841	23	37920274	37920961	3	-0.2609	NEUTRAL	NA	1	SYTL5
TCGA.AA.3667	23	37923810	39222810	468	0.072	NEUTRAL	NA	6	"MID1IP1,OTC,RPGR,SRPX,SYTL5,TSPAN7"
TCGA.AA.A01C.01A	23	38016142	69497203	1319	0.2583	NEUTRAL	NA	203	Too-Many
TCGA.AZ.4684.01A	23	38020148	55117728	1169	0.1845	NEUTRAL	NA	160	Too-Many
TCGA.AG.A01W.01A	23	38032042	40383159	61	0.001	NEUTRAL	NA	6	"BCOR,MID1IP1,OTC,RPGR,SRPX,TSPAN7"
TCGA.AA.A00N.01A	23	38128882	38169818	14	-0.0675	NEUTRAL	NA	1	RPGR
TCGA.AG.3909.01A	23	38128882	38169818	14	-0.3397	NEUTRAL	NA	1	RPGR
TCGA.AA.3930.01A	23	38147087	39922889	39	0.0693	NEUTRAL	NA	5	"BCOR,MID1IP1,OTC,RPGR,TSPAN7"
TCGA.AM.5820	23	38154071	154925044	24689	0.0327	NEUTRAL	NA	669	Too-Many
TCGA.CK.5914.01A	23	38176521	38226493	7	-0.3745	NEUTRAL	NA	2	"OTC,RPGR"
TCGA.AG.A015.01A	23	38182624	48462628	464	-0.0821	NEUTRAL	NA	61	"ARAF,ATP6AP2,BCOR,CASK,CDK16,CFP,CHST7,CXorf36,CXorf38,DDX3X,DUSP21,EBP,EFHC2,ELK1,FTSJ1,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NDUFB11,NYX,OTC,PORCN,RBM10,RBM3,RGN,RP2,RPGR,SLC38A5,SLC9A7,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SYN1,TBC1D25,TIMP1,TSPAN7,UBA1,USP11,USP9X,UXT,WDR13,ZNF157,ZNF182,ZNF41,ZNF630,ZNF674,ZNF81"
TCGA.AG.3909.01A	23	38211887	38546791	16	0.246	NEUTRAL	NA	2	"OTC,TSPAN7"
TCGA.AG.A00C.01A	23	38260486	38540423	11	0.1796	NEUTRAL	NA	2	"OTC,TSPAN7"
TCGA.AA.A00N.01A	23	38664221	39923552	11	-0.3285	NEUTRAL	NA	2	"BCOR,MID1IP1"
TCGA.CK.5914.01A	23	38664221	40523507	37	-0.2968	NEUTRAL	NA	6	"ATP6AP2,BCOR,CXorf38,MED14,MID1IP1,MPC1L"
TCGA.AA.3850	23	39194228	41408107	551	0.37695	NEUTRAL	NA	10	"ATP6AP2,BCOR,CASK,CXorf38,DDX3X,MED14,MED14OS,MPC1L,NYX,USP9X"
TCGA.AA.3667	23	39234210	154925044	24342	0.026	NEUTRAL	NA	665	Too-Many
TCGA.AG.A00C.01A	23	39916356	39923552	5	0.0764	NEUTRAL	NA	1	BCOR
TCGA.AA.A004.01A	23	39923552	53577575	751	-0.2266	NEUTRAL	NA	141	Too-Many
TCGA.AA.A01Q.01A	23	39937062	47030380	231	0.1951	NEUTRAL	NA	29	"ATP6AP2,BCOR,CASK,CHST7,CXorf36,CXorf38,DDX3X,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,MED14,MED14OS,MPC1L,NDP,NDUFB11,NYX,RBM10,RGN,RP2,SLC9A7,USP9X,ZNF674"
TCGA.F5.6813	23	40230055	88444083	7858	0.1288	NEUTRAL	NA	277	Too-Many
TCGA.AG.A01W.01A	23	40391162	46837185	266	0.279	NEUTRAL	NA	25	"ATP6AP2,CASK,CHST7,CXorf36,CXorf38,DDX3X,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,MED14,MED14OS,MPC1L,NDP,NYX,RP2,SLC9A7,USP9X,ZNF674"
TCGA.DY.A1DD	23	40396085	47313908	1409	0.0272	NEUTRAL	NA	33	"ATP6AP2,CASK,CDK16,CHST7,CXorf36,CXorf38,DDX3X,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,MED14,MED14OS,MPC1L,NDP,NDUFB11,NYX,RBM10,RGN,RP2,SLC9A7,UBA1,USP11,USP9X,ZNF157,ZNF41,ZNF674"
TCGA.AA.3930.01A	23	40448197	47705595	376	0.0541	NEUTRAL	NA	40	"ARAF,ATP6AP2,CASK,CDK16,CFP,CHST7,CXorf36,CXorf38,DDX3X,DUSP21,EFHC2,ELK1,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,MED14,MED14OS,MPC1L,NDP,NDUFB11,NYX,RBM10,RGN,RP2,SLC9A7,SYN1,TIMP1,UBA1,USP11,USP9X,UXT,ZNF157,ZNF41,ZNF674,ZNF81"
TCGA.AA.A00N.01A	23	40522147	40531066	4	-0.2803	NEUTRAL	NA	1	MED14
TCGA.AG.A00C.01A	23	40522147	41048535	48	0.3516	NEUTRAL	NA	3	"MED14,MED14OS,USP9X"
TCGA.AG.3909.01A	23	40522147	41055798	50	-0.0805	NEUTRAL	NA	3	"MED14,MED14OS,USP9X"
TCGA.AA.A00N.01A	23	40534426	40568573	12	0.2851	NEUTRAL	NA	1	MED14
TCGA.AA.A010.01A	23	40551426	44870144	159	-0.41	NEUTRAL	NA	15	"CASK,DDX3X,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,KDM6A,MAOA,MAOB,MED14,MED14OS,NDP,NYX,USP9X"
TCGA.AA.A00N.01A	23	40569179	40594431	9	-0.4445	NEUTRAL	NA	1	MED14
TCGA.AA.A01S	23	40978307	51830950	2016	0.02565	NEUTRAL	NA	116	Too-Many
TCGA.CK.5914.01A	23	41055798	41393938	36	-0.4484	NEUTRAL	NA	4	"CASK,DDX3X,NYX,USP9X"
TCGA.AG.3909.01A	23	41088509	41193429	4	-0.2649	NEUTRAL	NA	2	"DDX3X,USP9X"
TCGA.CK.4948.01B	23	41201740	41206831	9	-0.3228	NEUTRAL	NA	1	DDX3X
TCGA.AA.A00N.01A	23	41307064	41448710	16	0.2915	NEUTRAL	NA	2	"CASK,NYX"
TCGA.AG.3909.01A	23	41307064	44820507	83	0.0226	NEUTRAL	NA	11	"CASK,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,KDM6A,MAOA,MAOB,NDP,NYX"
TCGA.CK.4948.01B	23	41307064	48214554	323	0.0619	NEUTRAL	NA	40	"ARAF,CASK,CDK16,CFP,CHST7,CXorf36,DUSP21,EFHC2,ELK1,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,NDP,NDUFB11,NYX,RBM10,RGN,RP2,SLC9A7,SPACA5,SPACA5B,SSX1,SSX3,SSX5,SYN1,TIMP1,UBA1,USP11,UXT,ZNF157,ZNF182,ZNF41,ZNF630,ZNF674,ZNF81"
TCGA.AG.A00C.01A	23	41333313	44870144	84	0.2411	NEUTRAL	NA	11	"CASK,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,KDM6A,MAOA,MAOB,NDP,NYX"
TCGA.AA.3844	23	41374396	46960690	1143	0.355	NEUTRAL	NA	18	"CASK,CHST7,CXorf36,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,NDP,RGN,RP2,SLC9A7,ZNF674"
TCGA.CK.5914.01A	23	41401904	41782116	26	0.154	NEUTRAL	NA	3	"CASK,GPR34,GPR82"
TCGA.AA.3850	23	41414811	41824942	68	-0.07135	NEUTRAL	NA	3	"CASK,GPR34,GPR82"
TCGA.A6.3808.01A	23	41646379	47920148	261	0.1081	NEUTRAL	NA	34	"ARAF,CASK,CDK16,CFP,CHST7,CXorf36,DUSP21,EFHC2,ELK1,FUNDC1,JADE3,KDM6A,KRBOX4,MAOA,MAOB,NDP,NDUFB11,RBM10,RGN,RP2,SLC9A7,SPACA5,SPACA5B,SYN1,TIMP1,UBA1,USP11,UXT,ZNF157,ZNF182,ZNF41,ZNF630,ZNF674,ZNF81"
TCGA.AA.3941	23	41696622	44107264	546	-0.1599	NEUTRAL	NA	5	"CASK,EFHC2,MAOA,MAOB,NDP"
TCGA.CK.5914.01A	23	43817668	46309814	61	0.2504	NEUTRAL	NA	7	"CXorf36,DUSP21,EFHC2,FUNDC1,KDM6A,KRBOX4,NDP"
TCGA.AA.3850	23	44137976	45383750	233	0.23565	NEUTRAL	NA	5	"CXorf36,DUSP21,EFHC2,FUNDC1,KDM6A"
TCGA.A6.A56B	23	44584854	56769205	1756	0.3238	NEUTRAL	NA	148	Too-Many
TCGA.AG.4009.01A	23	44894117	44928807	11	-0.2465	NEUTRAL	NA	1	KDM6A
TCGA.AG.3611.01A	23	44910924	44938374	12	-0.1417	NEUTRAL	NA	1	KDM6A
TCGA.AG.3906.01A	23	44910924	50556861	531	0.1514	NEUTRAL	NA	96	"AKAP4,ARAF,CACNA1F,CCDC120,CCDC22,CCNB3,CDK16,CFP,CHST7,CLCN5,CXorf36,DGKK,EBP,ELK1,ERAS,FOXP3,FTSJ1,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,JADE3,KCND1,KDM6A,KRBOX4,MAGIX,NDUFB11,OTUD5,PAGE1,PAGE4,PCSK1N,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM10,RBM3,RGN,RP2,SHROOM4,SLC35A2,SLC38A5,SLC9A7,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYN1,SYP,TBC1D25,TFE3,TIMM17B,TIMP1,UBA1,USP11,USP27X,UXT,WAS,WDR13,WDR45,ZNF157,ZNF182,ZNF41,ZNF630,ZNF674,ZNF81"
TCGA.AG.3909.01A	23	44919228	44970550	16	-0.0211	NEUTRAL	NA	1	KDM6A
TCGA.AG.A00C.01A	23	44922745	46915437	58	0.2302	NEUTRAL	NA	8	"CHST7,CXorf36,JADE3,KDM6A,KRBOX4,RP2,SLC9A7,ZNF674"
TCGA.AA.A010.01A	23	44935930	46719375	49	-0.2067	NEUTRAL	NA	7	"CHST7,CXorf36,KDM6A,KRBOX4,RP2,SLC9A7,ZNF674"
TCGA.AG.3611.01A	23	44941763	47045434	70	0.1976	NEUTRAL	NA	11	"CHST7,CXorf36,JADE3,KDM6A,KRBOX4,NDUFB11,RBM10,RGN,RP2,SLC9A7,ZNF674"
TCGA.AZ.4614	23	44943418	46987972	403	0.0377	NEUTRAL	NA	9	"CHST7,CXorf36,JADE3,KDM6A,KRBOX4,RGN,RP2,SLC9A7,ZNF674"
TCGA.AA.3941	23	45125502	45622693	95	-0.1116	NEUTRAL	NA	0	None
TCGA.AA.3850	23	45423118	46178607	169	-0.20465	NEUTRAL	NA	0	None
TCGA.AA.3941	23	45832463	46165887	58	-0.2041	NEUTRAL	NA	0	None
TCGA.AA.3850	23	46179304	49461559	470	0.37615	NEUTRAL	NA	87	"ARAF,CACNA1F,CCDC120,CCDC22,CDK16,CFP,CHST7,EBP,ELK1,ERAS,FOXP3,FTSJ1,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,JADE3,KCND1,KRBOX4,MAGIX,NDUFB11,OTUD5,PAGE1,PCSK1N,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM10,RBM3,RGN,RP2,SLC35A2,SLC38A5,SLC9A7,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYN1,SYP,TBC1D25,TFE3,TIMM17B,TIMP1,UBA1,USP11,UXT,WAS,WDR13,WDR45,ZNF157,ZNF182,ZNF41,ZNF630,ZNF674,ZNF81"
TCGA.AG.3909.01A	23	46322161	46917542	38	0.1716	NEUTRAL	NA	6	"CHST7,JADE3,KRBOX4,RP2,SLC9A7,ZNF674"
TCGA.AA.A02H.01A	23	46521924	49689826	390	0.108	NEUTRAL	NA	87	"ARAF,CACNA1F,CCDC120,CCDC22,CDK16,CFP,CLCN5,EBP,ELK1,ERAS,FOXP3,FTSJ1,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,JADE3,KCND1,MAGIX,NDUFB11,OTUD5,PAGE1,PAGE4,PCSK1N,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM10,RBM3,RGN,RP2,SLC35A2,SLC38A5,SLC9A7,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYN1,SYP,TBC1D25,TFE3,TIMM17B,TIMP1,UBA1,USP11,USP27X,UXT,WAS,WDR13,WDR45,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.5M.AAT5	23	46624280	124418569	14704	0	NEUTRAL	NA	428	Too-Many
TCGA.AF.A56L	23	46624280	154925044	22396	0.0022	NEUTRAL	NA	641	Too-Many
TCGA.CK.5914.01A	23	46712894	47030380	28	0.1451	NEUTRAL	NA	5	"JADE3,NDUFB11,RBM10,RGN,RP2"
TCGA.AA.A010.01A	23	46844232	47045434	30	-0.3052	NEUTRAL	NA	4	"JADE3,NDUFB11,RBM10,RGN"
TCGA.AG.A01W.01A	23	46891733	46923401	7	0.1635	NEUTRAL	NA	1	JADE3
TCGA.AG.A01W.01A	23	46923625	46958633	19	-0.3047	NEUTRAL	NA	1	RGN
TCGA.AG.A01W.01A	23	46962901	47321724	44	0.2464	NEUTRAL	NA	7	"CDK16,NDUFB11,RBM10,UBA1,USP11,ZNF157,ZNF41"
TCGA.AA.A01Q.01A	23	47032463	47101811	41	-0.4789	NEUTRAL	NA	4	"CDK16,RBM10,UBA1,USP11"
TCGA.AG.A01J.01A	23	47034376	49137820	352	-0.0579	NEUTRAL	NA	56	"ARAF,CACNA1F,CCDC120,CCDC22,CDK16,CFP,EBP,ELK1,ERAS,FOXP3,FTSJ1,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,OTUD5,PCSK1N,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM10,RBM3,SLC35A2,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYN1,SYP,TBC1D25,TFE3,TIMM17B,TIMP1,UBA1,USP11,UXT,WAS,WDR13,WDR45,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.AA.A00N.01A	23	47038456	47062075	13	-0.0268	NEUTRAL	NA	2	"RBM10,UBA1"
TCGA.AG.3909.01A	23	47038456	47071776	19	-0.3938	NEUTRAL	NA	2	"RBM10,UBA1"
TCGA.AG.3611.01A	23	47058175	47085121	19	-0.123	NEUTRAL	NA	2	"CDK16,UBA1"
TCGA.AA.A02J.01A	23	47060644	48433532	154	-0.1744	NEUTRAL	NA	27	"ARAF,CDK16,CFP,EBP,ELK1,FTSJ1,PORCN,RBM3,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SYN1,TBC1D25,TIMP1,UBA1,USP11,UXT,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.AG.4009.01A	23	47069277	47087908	13	-0.1871	NEUTRAL	NA	2	"CDK16,UBA1"
TCGA.CK.5914.01A	23	47085696	47106956	17	-0.2182	NEUTRAL	NA	2	"CDK16,USP11"
TCGA.AG.3611.01A	23	47085696	53591986	521	0.2301	NEUTRAL	NA	111	Too-Many
TCGA.AA.A01Q.01A	23	47102758	47326754	14	0.2538	NEUTRAL	NA	3	"USP11,ZNF157,ZNF41"
TCGA.AA.A00N.01A	23	47102758	47926171	76	-0.0327	NEUTRAL	NA	14	"ARAF,CFP,ELK1,SPACA5,SPACA5B,SYN1,TIMP1,USP11,UXT,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.CK.6748	23	47133936	154925044	22556	-0.3563	NEUTRAL	NA	633	Too-Many
TCGA.CK.5914.01A	23	47230006	48049522	77	0.2253	NEUTRAL	NA	14	"ARAF,CFP,ELK1,SPACA5,SPACA5B,SSX5,SYN1,TIMP1,UXT,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.AA.A01Q.01A	23	47342972	47516934	38	-0.1663	NEUTRAL	NA	6	"ARAF,CFP,ELK1,SYN1,TIMP1,UXT"
TCGA.AG.A01W.01A	23	47363674	47373817	7	0.3628	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	23	47381156	47385524	4	-0.4091	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	23	47396116	47660537	17	0.3346	NEUTRAL	NA	6	"ARAF,CFP,ELK1,SYN1,TIMP1,UXT"
TCGA.AG.4009.01A	23	47424147	47498303	29	-0.346	NEUTRAL	NA	5	"ARAF,CFP,ELK1,SYN1,TIMP1"
TCGA.AA.A01Q.01A	23	47518181	47919040	15	0.3676	NEUTRAL	NA	6	"SPACA5,SPACA5B,UXT,ZNF182,ZNF630,ZNF81"
TCGA.AG.A00C.01A	23	47657265	47755195	7	0.0237	NEUTRAL	NA	1	ZNF81
TCGA.AG.3909.01A	23	47663650	47969596	19	0.0859	NEUTRAL	NA	5	"SPACA5,SPACA5B,ZNF182,ZNF630,ZNF81"
TCGA.AG.A01W.01A	23	47720484	48099499	41	-0.1175	NEUTRAL	NA	6	"SPACA5,SPACA5B,SSX5,ZNF182,ZNF630,ZNF81"
TCGA.AA.3844	23	47726167	47758233	9	-0.1335	NEUTRAL	NA	1	ZNF81
TCGA.AA.A01Q.01A	23	47920148	47978864	7	-0.2973	NEUTRAL	NA	1	ZNF630
TCGA.AG.A00C.01A	23	47978864	48340744	39	0.2593	NEUTRAL	NA	9	"FTSJ1,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5"
TCGA.AG.3909.01A	23	48047015	48336783	37	0.346	NEUTRAL	NA	7	"FTSJ1,SLC38A5,SSX1,SSX3,SSX4,SSX4B,SSX5"
TCGA.AA.A017.01A	23	48053536	48123219	7	0.0913	NEUTRAL	NA	2	"SSX1,SSX5"
TCGA.AG.3612	23	48076388	55100048	849	-0.0555	NEUTRAL	NA	107	Too-Many
TCGA.AA.A017.01A	23	48163734	48209371	5	0.2286	NEUTRAL	NA	1	SSX3
TCGA.AG.A01W.01A	23	48204310	48225689	13	-0.2754	NEUTRAL	NA	1	SSX3
TCGA.AA.A017.01A	23	48213405	48457088	40	-0.167	NEUTRAL	NA	10	"EBP,FTSJ1,PORCN,RBM3,SLC38A5,SSX3,SSX4,SSX4B,TBC1D25,WDR13"
TCGA.AA.3930.01A	23	48213405	48458715	41	-0.016	NEUTRAL	NA	10	"EBP,FTSJ1,PORCN,RBM3,SLC38A5,SSX3,SSX4,SSX4B,TBC1D25,WDR13"
TCGA.AA.A00N.01A	23	48244046	48270161	4	-0.439	NEUTRAL	NA	2	"SSX4,SSX4B"
TCGA.AG.A01W.01A	23	48253114	48342023	22	0.1594	NEUTRAL	NA	4	"FTSJ1,SLC38A5,SSX4,SSX4B"
TCGA.AA.A010.01A	23	48317268	48340744	15	0.0016	NEUTRAL	NA	2	"FTSJ1,SLC38A5"
TCGA.CK.4948.01B	23	48317268	101571928	1960	0.0461	NEUTRAL	NA	268	Too-Many
TCGA.CK.5914.01A	23	48320043	48831558	111	-0.0083	NEUTRAL	NA	21	"EBP,ERAS,FTSJ1,GATA1,GLOD5,GRIPAP1,HDAC6,KCND1,OTUD5,PCSK1N,PIM2,PORCN,PQBP1,RBM3,SLC35A2,SLC38A5,SUV39H1,TBC1D25,TIMM17B,WAS,WDR13"
TCGA.AA.A01Q.01A	23	48341309	49022373	143	-0.2651	NEUTRAL	NA	26	"CCDC120,EBP,ERAS,FTSJ1,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,OTUD5,PCSK1N,PIM2,PORCN,PQBP1,PRAF2,RBM3,SLC35A2,SUV39H1,TBC1D25,TFE3,TIMM17B,WAS,WDR13,WDR45"
TCGA.AG.A01W.01A	23	48342635	48399618	6	-0.1653	NEUTRAL	NA	4	"EBP,FTSJ1,PORCN,TBC1D25"
TCGA.AG.A01L.01A	23	48378712	48462628	17	0.1296	NEUTRAL	NA	5	"EBP,PORCN,RBM3,TBC1D25,WDR13"
TCGA.AA.A010.01A	23	48398148	48435367	9	-0.134	NEUTRAL	NA	2	"RBM3,TBC1D25"
TCGA.AA.A00N.01A	23	48417236	48463189	13	0.2588	NEUTRAL	NA	3	"RBM3,TBC1D25,WDR13"
TCGA.AA.A02J.01A	23	48435367	48840146	72	-0.203	NEUTRAL	NA	16	"ERAS,GATA1,GLOD5,GRIPAP1,HDAC6,KCND1,OTUD5,PCSK1N,PIM2,PQBP1,RBM3,SLC35A2,SUV39H1,TIMM17B,WAS,WDR13"
TCGA.AG.A01L.01A	23	48463189	48547659	9	-0.4037	NEUTRAL	NA	2	"WAS,WDR13"
TCGA.AG.A01W.01A	23	48505080	48535188	7	-0.2922	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	23	48536476	48710455	47	0.1029	NEUTRAL	NA	7	"ERAS,GATA1,GLOD5,HDAC6,PCSK1N,SUV39H1,WAS"
TCGA.AA.A00N.01A	23	48542191	48558431	12	-0.4924	NEUTRAL	NA	2	"SUV39H1,WAS"
TCGA.AG.4009.01A	23	48542191	48624226	14	-0.1334	NEUTRAL	NA	3	"GLOD5,SUV39H1,WAS"
TCGA.AA.3930.01A	23	48547659	48759463	41	-0.0367	NEUTRAL	NA	9	"ERAS,GATA1,GLOD5,HDAC6,PCSK1N,PQBP1,SUV39H1,TIMM17B,WAS"
TCGA.AA.A017.01A	23	48557251	48935066	91	0.0291	NEUTRAL	NA	17	"CCDC120,ERAS,GATA1,GLOD5,GRIPAP1,HDAC6,KCND1,OTUD5,PCSK1N,PIM2,PQBP1,PRAF2,SLC35A2,SUV39H1,TFE3,TIMM17B,WDR45"
TCGA.AA.A00N.01A	23	48564655	48652198	10	0.1733	NEUTRAL	NA	3	"GATA1,GLOD5,SUV39H1"
TCGA.G4.6303	23	48614525	49173298	40	0.1936	NEUTRAL	NA	26	"CACNA1F,CCDC120,CCDC22,ERAS,FOXP3,GAGE10,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,OTUD5,PCSK1N,PIM2,PLP2,PPP1R3F,PQBP1,PRAF2,PRICKLE3,SLC35A2,SYP,TFE3,TIMM17B,WDR45"
TCGA.AA.A010.01A	23	48620128	48652198	8	-0.2625	NEUTRAL	NA	2	"GATA1,GLOD5"
TCGA.AG.A015.01A	23	48624226	48897935	74	-0.1673	NEUTRAL	NA	13	"ERAS,GATA1,GLOD5,GRIPAP1,HDAC6,KCND1,OTUD5,PCSK1N,PIM2,PQBP1,SLC35A2,TFE3,TIMM17B"
TCGA.AG.A01L.01A	23	48624226	48897935	71	0.0396	NEUTRAL	NA	13	"ERAS,GATA1,GLOD5,GRIPAP1,HDAC6,KCND1,OTUD5,PCSK1N,PIM2,PQBP1,SLC35A2,TFE3,TIMM17B"
TCGA.AA.A00N.01A	23	48661069	48841669	57	-0.4573	NEUTRAL	NA	10	"ERAS,GRIPAP1,HDAC6,KCND1,OTUD5,PCSK1N,PIM2,PQBP1,SLC35A2,TIMM17B"
TCGA.AG.4009.01A	23	48672828	48767051	23	-0.0112	NEUTRAL	NA	6	"ERAS,HDAC6,PCSK1N,PQBP1,SLC35A2,TIMM17B"
TCGA.AA.A010.01A	23	48689620	48783071	24	-0.4143	NEUTRAL	NA	6	"OTUD5,PCSK1N,PIM2,PQBP1,SLC35A2,TIMM17B"
TCGA.AG.A01W.01A	23	48715494	48784880	25	-0.3324	NEUTRAL	NA	5	"OTUD5,PIM2,PQBP1,SLC35A2,TIMM17B"
TCGA.AG.3909.01A	23	48780892	48896591	35	0.1621	NEUTRAL	NA	4	"GRIPAP1,KCND1,OTUD5,TFE3"
TCGA.AG.A01W.01A	23	48822220	48915249	13	-0.2462	NEUTRAL	NA	4	"CCDC120,GRIPAP1,KCND1,TFE3"
TCGA.AA.A010.01A	23	48847023	48979865	38	-0.3757	NEUTRAL	NA	6	"CCDC120,GPKOW,GRIPAP1,PRAF2,TFE3,WDR45"
TCGA.AA.3930.01A	23	48853625	50119708	173	0.1048	NEUTRAL	NA	43	"AKAP4,CACNA1F,CCDC120,CCDC22,CCNB3,CLCN5,DGKK,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GPKOW,GRIPAP1,MAGIX,PAGE1,PAGE4,PLP2,PPP1R3F,PRAF2,PRICKLE3,SYP,TFE3,USP27X,WDR45"
TCGA.CK.5914.01A	23	48890931	48935066	20	-0.2285	NEUTRAL	NA	4	"CCDC120,PRAF2,TFE3,WDR45"
TCGA.AA.A02J.01A	23	48897935	49067745	45	-0.4226	NEUTRAL	NA	10	"CACNA1F,CCDC120,GPKOW,MAGIX,PLP2,PRAF2,PRICKLE3,SYP,TFE3,WDR45"
TCGA.AG.4009.01A	23	48919741	48935066	13	0.2238	NEUTRAL	NA	3	"CCDC120,PRAF2,WDR45"
TCGA.AG.A015.01A	23	48919741	49035553	33	0.1787	NEUTRAL	NA	7	"CCDC120,GPKOW,MAGIX,PLP2,PRAF2,PRICKLE3,WDR45"
TCGA.AG.A01L.01A	23	48919741	49040032	30	0.3266	NEUTRAL	NA	7	"CCDC120,GPKOW,MAGIX,PLP2,PRAF2,PRICKLE3,WDR45"
TCGA.AG.A01W.01A	23	48927969	48955619	20	-0.2564	NEUTRAL	NA	2	"PRAF2,WDR45"
TCGA.AG.A01W.01A	23	48965890	48970344	4	-0.0755	NEUTRAL	NA	1	GPKOW
TCGA.AA.A02K.01A	23	48970509	53570766	316	0.1814	NEUTRAL	NA	66	"AKAP4,BMP15,CACNA1F,CCDC22,CCNB3,CLCN5,CXorf67,DGKK,FAM156A,FAM156B,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GPKOW,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,KDM5C,MAGED1,MAGED4,MAGED4B,MAGIX,NUDT10,NUDT11,PAGE1,PAGE4,PLP2,PPP1R3F,PRICKLE3,RIBC1,SHROOM4,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,SYP,TSPYL2,USP27X,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AG.3909.01A	23	48970517	48979865	8	0.1506	NEUTRAL	NA	1	GPKOW
TCGA.AA.A017.01A	23	48970517	49853313	99	-0.2859	NEUTRAL	NA	35	"CACNA1F,CCDC22,CLCN5,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GPKOW,MAGIX,PAGE1,PAGE4,PLP2,PPP1R3F,PRICKLE3,SYP,USP27X"
TCGA.AG.A01W.01A	23	48985380	49095219	26	-0.1759	NEUTRAL	NA	6	"CACNA1F,CCDC22,MAGIX,PLP2,PRICKLE3,SYP"
TCGA.CK.5914.01A	23	49020082	49689826	97	-0.0823	NEUTRAL	NA	34	"CACNA1F,CCDC22,CLCN5,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,MAGIX,PAGE1,PAGE4,PLP2,PPP1R3F,PRICKLE3,SYP,USP27X"
TCGA.AG.4009.01A	23	49020994	49035553	12	-0.3314	NEUTRAL	NA	3	"MAGIX,PLP2,PRICKLE3"
TCGA.AG.A015.01A	23	49035945	49070224	22	-0.1434	NEUTRAL	NA	3	"CACNA1F,PRICKLE3,SYP"
TCGA.AG.4009.01A	23	49035945	49081204	33	0.1889	NEUTRAL	NA	3	"CACNA1F,PRICKLE3,SYP"
TCGA.AF.3914.01A	23	49040032	57618444	544	0.185	NEUTRAL	NA	92	"AKAP4,ALAS2,APEX2,BMP15,CACNA1F,CCDC22,CCNB3,CLCN5,CXorf67,DGKK,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXP3,FOXR2,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTRNR2L10,NUDT10,NUDT11,PAGE1,PAGE2,PAGE2B,PAGE3,PAGE4,PAGE5,PFKFB1,PHF8,PPP1R3F,PRICKLE3,RIBC1,RRAGB,SHROOM4,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,SYP,TRO,TSPYL2,TSR2,UBQLN2,USP27X,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5,ZXDB"
TCGA.AG.A01L.01A	23	49049719	49078934	27	-0.2644	NEUTRAL	NA	2	"CACNA1F,SYP"
TCGA.AG.3909.01A	23	49054172	49099320	43	-0.3342	NEUTRAL	NA	3	"CACNA1F,CCDC22,SYP"
TCGA.AA.3980.01A	23	49064938	49066744	5	-0.3291	NEUTRAL	NA	1	CACNA1F
TCGA.AA.3980.01A	23	49067008	50094193	104	0.1604	NEUTRAL	NA	32	"AKAP4,CACNA1F,CCDC22,CCNB3,CLCN5,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,PAGE1,PAGE4,PPP1R3F,USP27X"
TCGA.AA.A02J.01A	23	49069090	155239443	3776	-0.1168	NEUTRAL	NA	587	Too-Many
TCGA.AA.A01Q.01A	23	49071499	49076861	8	0.0372	NEUTRAL	NA	1	CACNA1F
TCGA.AA.A01Q.01A	23	49077418	49370581	39	-0.4222	NEUTRAL	NA	26	"CACNA1F,CCDC22,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,PPP1R3F"
TCGA.AG.A01L.01A	23	49081204	49850590	49	0.1048	NEUTRAL	NA	30	"CACNA1F,CCDC22,CLCN5,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,PAGE1,PAGE4,PPP1R3F,USP27X"
TCGA.AG.4009.01A	23	49082344	49137820	20	-0.1595	NEUTRAL	NA	4	"CACNA1F,CCDC22,FOXP3,PPP1R3F"
TCGA.AG.A015.01A	23	49082344	51640063	129	-0.1001	NEUTRAL	NA	40	"AKAP4,BMP15,CACNA1F,CCDC22,CCNB3,CLCN5,CXorf67,DGKK,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GSPT2,MAGED1,NUDT10,NUDT11,PAGE1,PAGE4,PPP1R3F,SHROOM4,USP27X"
TCGA.AG.A00C.01A	23	49087273	53426464	195	0.3128	NEUTRAL	NA	58	"AKAP4,BMP15,CACNA1F,CCDC22,CCNB3,CLCN5,CXorf67,DGKK,FAM156A,FAM156B,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GPR173,GSPT2,IQSEC2,KDM5C,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,PAGE1,PAGE4,PPP1R3F,SHROOM4,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,USP27X,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AA.A00N.01A	23	49092021	49142296	23	0.0487	NEUTRAL	NA	3	"CCDC22,FOXP3,PPP1R3F"
TCGA.AG.3909.01A	23	49104644	49142296	13	0.1786	NEUTRAL	NA	3	"CCDC22,FOXP3,PPP1R3F"
TCGA.AG.A01W.01A	23	49256562	50397866	95	0.1937	NEUTRAL	NA	24	"AKAP4,CCNB3,CLCN5,DGKK,GAGE1,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2C,GAGE2E,GAGE6,GAGE8,PAGE1,PAGE4,SHROOM4,USP27X"
TCGA.AA.A010.01A	23	49369617	53587128	230	-0.4074	NEUTRAL	NA	36	"AKAP4,BMP15,CCNB3,CLCN5,CXorf67,DGKK,FAM156A,FAM156B,GAGE1,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,KDM5C,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,PAGE1,PAGE4,RIBC1,SHROOM4,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,USP27X,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.G4.6303	23	49372143	49375356	5	-0.4442	NEUTRAL	NA	1	GAGE1
TCGA.G4.6303	23	49375422	50282627	169	0.282	NEUTRAL	NA	7	"AKAP4,CCNB3,CLCN5,DGKK,PAGE1,PAGE4,USP27X"
TCGA.AA.3844	23	49448280	68180081	2093	0.2619	NEUTRAL	NA	82	"AKAP4,ALAS2,AMER1,APEX2,AR,ARHGEF9,ASB12,BMP15,CCNB3,CLCN5,CXorf67,DGKK,EDA2R,EFNB1,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HEPH,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,LAS1L,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MSN,MTMR8,MTRNR2L10,NUDT10,NUDT11,OPHN1,PAGE1,PAGE2,PAGE2B,PAGE3,PAGE4,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SHROOM4,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SPIN4,SSX2,SSX2B,SSX7,STARD8,TRO,TSPYL2,TSR2,UBQLN2,USP27X,USP51,VSIG4,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.3909.01A	23	49452084	50659396	90	0.2123	NEUTRAL	NA	9	"AKAP4,BMP15,CCNB3,CLCN5,DGKK,PAGE1,PAGE4,SHROOM4,USP27X"
TCGA.AA.A01Q.01A	23	49452084	53267298	139	0.2895	NEUTRAL	NA	31	"AKAP4,BMP15,CCNB3,CLCN5,CXorf67,DGKK,FAM156A,FAM156B,GPR173,GSPT2,IQSEC2,KDM5C,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,PAGE1,PAGE4,SHROOM4,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,USP27X,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AA.3941	23	49466422	57293924	1107	-0.0507	NEUTRAL	NA	61	"AKAP4,ALAS2,APEX2,BMP15,CCNB3,CLCN5,CXorf67,DGKK,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTRNR2L10,NUDT10,NUDT11,PAGE2,PAGE2B,PAGE3,PAGE4,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SHROOM4,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP27X,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.CM.6172	23	49609259	52821869	453	0.0658	NEUTRAL	NA	20	"AKAP4,BMP15,CCNB3,CLCN5,CXorf67,DGKK,GSPT2,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,SHROOM4,SSX2,SSX2B,SSX7,USP27X,XAGE1B,XAGE1E,XAGE2"
TCGA.CK.5914.01A	23	49956913	50031732	8	0.1157	NEUTRAL	NA	2	"AKAP4,CCNB3"
TCGA.AG.A01L.01A	23	50085152	53966565	219	0.1172	NEUTRAL	NA	31	"BMP15,CCNB3,CXorf67,DGKK,FAM156A,FAM156B,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,KDM5C,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,PHF8,RIBC1,SHROOM4,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AA.3930.01A	23	50133290	50146442	7	0.2736	NEUTRAL	NA	1	DGKK
TCGA.CK.5914.01A	23	50136112	50167196	8	0.029	NEUTRAL	NA	1	DGKK
TCGA.AA.A017.01A	23	50143983	57318892	391	-0.0507	NEUTRAL	NA	57	"ALAS2,APEX2,BMP15,CXorf67,DGKK,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTRNR2L10,NUDT10,NUDT11,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SHROOM4,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AA.3980.01A	23	50146442	155246280	4008	0.1434	NEUTRAL	NA	555	Too-Many
TCGA.AA.3930.01A	23	50147027	51487101	25	-0.0671	NEUTRAL	NA	7	"BMP15,CXorf67,DGKK,GSPT2,NUDT10,NUDT11,SHROOM4"
TCGA.AA.A02H.01A	23	50147027	64141655	438	0.2821	NEUTRAL	NA	65	"ALAS2,AMER1,APEX2,ARHGEF9,ASB12,BMP15,CXorf67,DGKK,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTMR8,MTRNR2L10,NUDT10,NUDT11,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SHROOM4,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SPIN4,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5,ZC4H2,ZXDA,ZXDB"
TCGA.AG.A01J.01A	23	50165383	57318892	392	0.1186	NEUTRAL	NA	57	"ALAS2,APEX2,BMP15,CXorf67,DGKK,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTRNR2L10,NUDT10,NUDT11,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SHROOM4,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.G4.6303	23	50294709	54208111	468	-0.3939	NEUTRAL	NA	30	"BMP15,CXorf67,FAM120C,FAM156A,FAM156B,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,KDM5C,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,PHF8,RIBC1,SHROOM4,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AG.3906.01A	23	50653777	51644637	22	-0.407	NEUTRAL	NA	6	"BMP15,CXorf67,GSPT2,MAGED1,NUDT10,NUDT11"
TCGA.AG.4009.01A	23	51075787	51238771	5	-0.3113	NEUTRAL	NA	3	"CXorf67,NUDT10,NUDT11"
TCGA.CK.5914.01A	23	51075787	51935071	21	-0.0177	NEUTRAL	NA	7	"CXorf67,GSPT2,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11"
TCGA.AA.3850	23	51110944	57308489	776	-0.16265	NEUTRAL	NA	52	"ALAS2,APEX2,CXorf67,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTRNR2L10,NUDT11,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AG.3591	23	51440951	52098737	82	0.1357	NEUTRAL	NA	4	"GSPT2,MAGED1,MAGED4,MAGED4B"
TCGA.AG.A015.01A	23	51640289	51935071	8	0.3485	NEUTRAL	NA	3	"MAGED1,MAGED4,MAGED4B"
TCGA.AG.3909.01A	23	51644637	53111629	20	0.1653	NEUTRAL	NA	16	"FAM156A,FAM156B,GPR173,MAGED1,MAGED4,MAGED4B,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AG.3906.01A	23	51934490	52826270	9	0.2553	NEUTRAL	NA	9	"MAGED4,MAGED4B,SPANXN5,SSX2,SSX2B,SSX7,XAGE1B,XAGE1E,XAGE2"
TCGA.AA.3930.01A	23	51935071	52896027	17	0.271	NEUTRAL	NA	11	"MAGED4,MAGED4B,SPANXN5,SSX2,SSX2B,SSX7,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AG.A01W.01A	23	51951256	52969692	27	-0.1251	NEUTRAL	NA	11	"FAM156A,FAM156B,SPANXN5,SSX2,SSX2B,SSX7,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AA.A01S	23	52097352	79654863	3584	0.02135	NEUTRAL	NA	141	Too-Many
TCGA.A6.6654	23	52573821	62877728	806	0.0863	NEUTRAL	NA	48	"ALAS2,APEX2,ARHGEF9,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED2,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SPIN4,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP51,WNK3,XAGE3,XAGE5,ZXDA,ZXDB"
TCGA.AG.A015.01A	23	52674461	53230684	32	-0.1344	NEUTRAL	NA	11	"FAM156A,FAM156B,GPR173,KDM5C,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,XAGE3,XAGE5"
TCGA.AA.A00N.01A	23	52825481	53105773	11	-0.1199	NEUTRAL	NA	6	"FAM156A,FAM156B,GPR173,SPANXN5,XAGE3,XAGE5"
TCGA.CK.5914.01A	23	52841580	53105773	9	0.2256	NEUTRAL	NA	5	"FAM156A,FAM156B,GPR173,XAGE3,XAGE5"
TCGA.AG.3906.01A	23	52891557	53230684	21	-0.1702	NEUTRAL	NA	6	"FAM156A,FAM156B,GPR173,KDM5C,TSPYL2,XAGE3"
TCGA.AA.A00N.01A	23	53221882	53240630	12	-0.1204	NEUTRAL	NA	1	KDM5C
TCGA.CK.5914.01A	23	53221882	53284945	33	-0.0329	NEUTRAL	NA	2	"IQSEC2,KDM5C"
TCGA.AA.3930.01A	23	53221882	53461180	64	0.0942	NEUTRAL	NA	5	"HSD17B10,IQSEC2,KDM5C,RIBC1,SMC1A"
TCGA.AG.A01W.01A	23	53238600	53244349	9	0.3618	NEUTRAL	NA	1	KDM5C
TCGA.AG.3909.01A	23	53239569	53265477	10	-0.1943	NEUTRAL	NA	2	"IQSEC2,KDM5C"
TCGA.AG.A01W.01A	23	53247421	53282182	15	-0.3836	NEUTRAL	NA	2	"IQSEC2,KDM5C"
TCGA.AG.3906.01A	23	53253871	53421661	20	-0.1502	NEUTRAL	NA	3	"IQSEC2,KDM5C,SMC1A"
TCGA.AG.A015.01A	23	53267298	53426464	18	-0.0444	NEUTRAL	NA	2	"IQSEC2,SMC1A"
TCGA.AG.A01W.01A	23	53284003	53449432	25	0.1409	NEUTRAL	NA	2	"IQSEC2,SMC1A"
TCGA.AA.A01Q.01A	23	53284945	53643882	91	0.0707	NEUTRAL	NA	5	"HSD17B10,HUWE1,IQSEC2,RIBC1,SMC1A"
TCGA.AG.3909.01A	23	53436304	53449394	7	-0.2691	NEUTRAL	NA	1	SMC1A
TCGA.AA.A00N.01A	23	53436304	53561440	19	-0.4837	NEUTRAL	NA	4	"HSD17B10,HUWE1,RIBC1,SMC1A"
TCGA.CK.5914.01A	23	53438669	53563071	20	-0.1704	NEUTRAL	NA	4	"HSD17B10,HUWE1,RIBC1,SMC1A"
TCGA.AG.3906.01A	23	53441939	53461180	12	-0.1039	NEUTRAL	NA	3	"HSD17B10,RIBC1,SMC1A"
TCGA.AG.A015.01A	23	53453174	69498336	506	-0.0849	NEUTRAL	NA	60	"ALAS2,AMER1,APEX2,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAAH2,FAM104B,FAM120C,FAM155B,FGD1,FOXR2,GNL3L,HEPH,HSD17B10,HUWE1,IGBP1,ITIH6,KLF8,LAS1L,MAGED2,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,OTUD6A,P2RY4,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,PJA1,RIBC1,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,TRO,TSR2,UBQLN2,USP51,VSIG4,WNK3,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.A00C.01A	23	53460631	53589755	31	0.3007	NEUTRAL	NA	2	"HSD17B10,HUWE1"
TCGA.AG.3906.01A	23	53563071	53587128	22	0.3327	NEUTRAL	NA	1	HUWE1
TCGA.AA.3930.01A	23	53570754	54824515	176	0.0482	NEUTRAL	NA	8	"FAM120C,FGD1,GNL3L,HUWE1,ITIH6,PHF8,TSR2,WNK3"
TCGA.AA.A02K.01A	23	53571473	53587100	15	-0.184	NEUTRAL	NA	1	HUWE1
TCGA.AG.A01W.01A	23	53576945	53588688	14	-0.5064	NEUTRAL	NA	1	HUWE1
TCGA.AG.4009.01A	23	53579232	53591986	14	0.0262	NEUTRAL	NA	1	HUWE1
TCGA.AA.A00N.01A	23	53581566	53589755	10	0.1576	NEUTRAL	NA	1	HUWE1
TCGA.AA.A02K.01A	23	53588668	102192848	1485	0.1144	NEUTRAL	NA	185	Too-Many
TCGA.AG.A01W.01A	23	53590095	53594322	4	0.1106	NEUTRAL	NA	1	HUWE1
TCGA.AG.3909.01A	23	53590668	53596534	5	-0.1658	NEUTRAL	NA	1	HUWE1
TCGA.CK.5914.01A	23	53590668	53596534	5	0.0048	NEUTRAL	NA	1	HUWE1
TCGA.AG.3611.01A	23	53595613	53644250	30	-0.1354	NEUTRAL	NA	1	HUWE1
TCGA.AG.4009.01A	23	53595613	53661133	41	-0.4645	NEUTRAL	NA	1	HUWE1
TCGA.AG.A01W.01A	23	53603009	53628696	18	0.1917	NEUTRAL	NA	1	HUWE1
TCGA.AG.3909.01A	23	53611129	53661133	33	-0.3691	NEUTRAL	NA	1	HUWE1
TCGA.CK.5914.01A	23	53616480	55029354	179	0.1416	NEUTRAL	NA	12	"APEX2,FAM120C,FGD1,GNL3L,HUWE1,ITIH6,MAGED2,PFKFB1,PHF8,TRO,TSR2,WNK3"
TCGA.AG.A01W.01A	23	53630119	53632021	3	-0.3625	NEUTRAL	NA	1	HUWE1
TCGA.AG.A01W.01A	23	53633253	53660976	17	0.2286	NEUTRAL	NA	1	HUWE1
TCGA.AG.3611.01A	23	53651498	55057295	164	0.2707	NEUTRAL	NA	13	"ALAS2,APEX2,FAM120C,FGD1,GNL3L,HUWE1,ITIH6,MAGED2,PFKFB1,PHF8,TRO,TSR2,WNK3"
TCGA.A6.3808.01A	23	53656418	67936155	374	0.3578	NEUTRAL	NA	47	"ALAS2,AMER1,APEX2,AR,ARHGEF9,ASB12,EDA2R,FAAH2,FAM104B,FAM120C,FGD1,FOXR2,GNL3L,HEPH,HUWE1,ITIH6,KLF8,LAS1L,MAGED2,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,TRO,TSR2,UBQLN2,USP51,VSIG4,WNK3,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.4009.01A	23	53672224	54028975	18	0.1418	NEUTRAL	NA	2	"HUWE1,PHF8"
TCGA.AG.3906.01A	23	53672224	54117693	31	0.0818	NEUTRAL	NA	3	"FAM120C,HUWE1,PHF8"
TCGA.AA.A01Q.01A	23	53672224	54475545	72	0.2622	NEUTRAL	NA	6	"FAM120C,FGD1,HUWE1,PHF8,TSR2,WNK3"
TCGA.AG.3909.01A	23	53672224	55030185	146	-0.0774	NEUTRAL	NA	12	"APEX2,FAM120C,FGD1,GNL3L,HUWE1,ITIH6,MAGED2,PFKFB1,PHF8,TRO,TSR2,WNK3"
TCGA.AG.A00C.01A	23	53674269	54117693	30	0.2726	NEUTRAL	NA	3	"FAM120C,HUWE1,PHF8"
TCGA.AG.A01W.01A	23	53688941	54376275	62	0.2642	NEUTRAL	NA	4	"FAM120C,HUWE1,PHF8,WNK3"
TCGA.D5.6539	23	54007888	154925044	21657	-0.1304	NEUTRAL	NA	524	Too-Many
TCGA.AD.A5EJ	23	54008997	154925044	21540	0.0081	NEUTRAL	NA	524	Too-Many
TCGA.AA.A010.01A	23	54040790	54106592	9	0.1714	NEUTRAL	NA	2	"FAM120C,PHF8"
TCGA.AA.A00N.01A	23	54049155	54142929	10	0.0279	NEUTRAL	NA	2	"FAM120C,PHF8"
TCGA.AA.A010.01A	23	54107746	54117693	4	-0.4655	NEUTRAL	NA	1	FAM120C
TCGA.AG.4009.01A	23	54142929	54208921	10	-0.2509	NEUTRAL	NA	1	FAM120C
TCGA.AA.A00N.01A	23	54177667	54255110	7	-0.1907	NEUTRAL	NA	2	"FAM120C,WNK3"
TCGA.AG.3906.01A	23	54177667	54320934	18	-0.1941	NEUTRAL	NA	2	"FAM120C,WNK3"
TCGA.AG.A00C.01A	23	54185793	54521507	41	0.3664	NEUTRAL	NA	4	"FAM120C,FGD1,TSR2,WNK3"
TCGA.G4.6303	23	54215763	55467512	179	0.2346	NEUTRAL	NA	16	"ALAS2,APEX2,FAM104B,FGD1,GNL3L,ITIH6,MAGED2,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,TRO,TSR2,WNK3"
TCGA.AA.A010.01A	23	54255110	54574614	45	-0.2807	NEUTRAL	NA	4	"FGD1,GNL3L,TSR2,WNK3"
TCGA.AG.3906.01A	23	54324576	54586918	36	0.2382	NEUTRAL	NA	4	"FGD1,GNL3L,TSR2,WNK3"
TCGA.AG.A01L.01A	23	54334306	54781399	38	0.088	NEUTRAL	NA	5	"FGD1,GNL3L,ITIH6,TSR2,WNK3"
TCGA.AA.A01Q.01A	23	54476040	54566546	14	-0.2613	NEUTRAL	NA	2	"FGD1,GNL3L"
TCGA.AG.A01W.01A	23	54483541	54968100	61	-0.0946	NEUTRAL	NA	6	"FGD1,GNL3L,ITIH6,MAGED2,PFKFB1,TRO"
TCGA.AA.A00N.01A	23	54521507	54586918	14	-0.3648	NEUTRAL	NA	2	"FGD1,GNL3L"
TCGA.AA.A01Q.01A	23	54567654	55027954	56	0.2507	NEUTRAL	NA	6	"APEX2,GNL3L,ITIH6,MAGED2,PFKFB1,TRO"
TCGA.AG.A00C.01A	23	54570614	69478339	336	0.252	NEUTRAL	NA	51	"ALAS2,AMER1,APEX2,AR,ARHGEF9,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAAH2,FAM104B,FAM155B,FOXR2,GNL3L,HEPH,IGBP1,ITIH6,KLF8,LAS1L,MAGED2,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,OTUD6A,P2RY4,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PJA1,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,TRO,UBQLN2,USP51,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AA.A010.01A	23	54577340	54982559	48	0.1071	NEUTRAL	NA	5	"GNL3L,ITIH6,MAGED2,PFKFB1,TRO"
TCGA.DM.A285	23	54757122	112255700	10195	0.132	NEUTRAL	NA	245	Too-Many
TCGA.AG.3906.01A	23	54776277	69522100	358	-0.0392	NEUTRAL	NA	54	"ALAS2,AMER1,APEX2,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAAH2,FAM104B,FAM155B,FOXR2,HEPH,IGBP1,ITIH6,KIF4A,KLF8,LAS1L,MAGED2,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,OTUD6A,P2RY4,PAGE2,PAGE2B,PAGE3,PAGE5,PDZD11,PFKFB1,PJA1,RAB41,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,TRO,UBQLN2,USP51,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AA.A00D.01A	23	54814886	55052216	50	0.3761	NEUTRAL	NA	6	"ALAS2,APEX2,ITIH6,MAGED2,PFKFB1,TRO"
TCGA.AG.A01L.01A	23	54818332	54948999	15	5.00E-04	NEUTRAL	NA	3	"ITIH6,MAGED2,TRO"
TCGA.AG.A01L.01A	23	54950846	54975459	14	0.3677	NEUTRAL	NA	2	"PFKFB1,TRO"
TCGA.AA.3930.01A	23	54952823	70280819	430	-0.0542	NEUTRAL	NA	57	"ALAS2,AMER1,APEX2,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,DLG3,EDA,EDA2R,EFNB1,FAAH2,FAM104B,FAM155B,FOXR2,GDPD2,HEPH,IGBP1,KIF4A,KLF8,LAS1L,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,OTUD6A,P2RY4,PAGE2,PAGE2B,PAGE3,PAGE5,PDZD11,PFKFB1,PJA1,RAB41,RRAGB,SLC7A3,SNX12,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,TEX11,TRO,UBQLN2,USP51,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.A01L.01A	23	54978311	55029354	12	0.0515	NEUTRAL	NA	2	"APEX2,PFKFB1"
TCGA.AG.A01W.01A	23	54980722	55045412	14	0.0509	NEUTRAL	NA	3	"ALAS2,APEX2,PFKFB1"
TCGA.AA.A010.01A	23	55026816	55041129	9	0.3341	NEUTRAL	NA	2	"ALAS2,APEX2"
TCGA.AG.A01L.01A	23	55030185	55041129	5	-0.4722	NEUTRAL	NA	2	"ALAS2,APEX2"
TCGA.AA.A010.01A	23	55041970	55102419	10	-0.3849	NEUTRAL	NA	2	"ALAS2,PAGE2B"
TCGA.AG.A01L.01A	23	55041970	64959550	135	0.1753	NEUTRAL	NA	28	"ALAS2,AMER1,ARHGEF9,ASB12,FAAH2,FAM104B,FOXR2,KLF8,LAS1L,MAGEH1,MSN,MTMR8,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,UBQLN2,USP51,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.A00Y.01A	23	55046704	66764988	169	-0.1733	NEUTRAL	NA	32	"ALAS2,AMER1,AR,ARHGEF9,ASB12,EDA2R,FAAH2,FAM104B,FOXR2,HEPH,KLF8,LAS1L,MAGEH1,MSN,MTMR8,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,UBQLN2,USP51,VSIG4,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.A01W.01A	23	55063430	55084553	11	0.0178	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	23	55102419	62569902	63	-0.3795	NEUTRAL	NA	19	"FAAH2,FAM104B,FOXR2,KLF8,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,UBQLN2,USP51,ZXDA,ZXDB"
TCGA.CK.5914.01A	23	55102419	62569902	63	0.0333	NEUTRAL	NA	19	"FAAH2,FAM104B,FOXR2,KLF8,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,UBQLN2,USP51,ZXDA,ZXDB"
TCGA.AA.A01Q.01A	23	55102419	67751706	197	0.1629	NEUTRAL	NA	33	"AMER1,AR,ARHGEF9,ASB12,EDA2R,FAAH2,FAM104B,FOXR2,HEPH,KLF8,LAS1L,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,PAGE2,PAGE2B,PAGE3,PAGE5,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,UBQLN2,USP51,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AA.A010.01A	23	55102985	55479496	20	0.3704	NEUTRAL	NA	7	"FAM104B,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5"
TCGA.AG.3611.01A	23	55117728	64887618	104	0.1434	NEUTRAL	NA	26	"AMER1,ARHGEF9,ASB12,FAAH2,FAM104B,FOXR2,KLF8,LAS1L,MAGEH1,MSN,MTMR8,MTRNR2L10,PAGE2,PAGE3,PAGE5,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,UBQLN2,USP51,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AA.3841	23	55122782	55123018	3	0.0522	NEUTRAL	NA	0	None
TCGA.AG.3612	23	55131039	69404880	1659	-0.006	NEUTRAL	NA	40	"AMER1,AR,ARHGEF9,ASB12,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAAH2,FAM104B,FAM155B,FOXR2,HEPH,IGBP1,KLF8,LAS1L,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,OTUD6A,PAGE3,PAGE5,PJA1,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,UBQLN2,USP51,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.G4.6303	23	55476376	56263005	139	-0.4358	NEUTRAL	NA	5	"FOXR2,KLF8,MAGEH1,RRAGB,USP51"
TCGA.AG.4009.01A	23	55513200	56259674	15	-0.166	NEUTRAL	NA	4	"FOXR2,KLF8,RRAGB,USP51"
TCGA.DY.A1H8	23	55738259	154925044	21473	-0.0298	NEUTRAL	NA	503	Too-Many
TCGA.A6.2680	23	55749137	154925044	21438	-0.1918	NEUTRAL	NA	503	Too-Many
TCGA.G4.6303	23	56264983	154925044	21360	0.2826	NEUTRAL	NA	502	Too-Many
TCGA.QL.A97D	23	56502418	58438009	277	0.1641	NEUTRAL	NA	7	"FAAH2,SPIN2A,SPIN2B,SPIN3,UBQLN2,ZXDA,ZXDB"
TCGA.F4.6459	23	56613475	56614067	2	-0.2475	NEUTRAL	NA	0	None
TCGA.F4.6459	23	56615320	154925044	21313	0.3637	NEUTRAL	NA	500	Too-Many
TCGA.AF.2689	23	56637660	56838990	40	-0.3992	NEUTRAL	NA	0	None
TCGA.AF.2689	23	56847279	122806830	12904	0.2168	NEUTRAL	NA	283	Too-Many
TCGA.AA.3860	23	57156315	114909138	10490	0.0283	NEUTRAL	NA	231	Too-Many
TCGA.AA.3982	23	57308489	67089745	735	-0.3552	NEUTRAL	NA	16	"AMER1,AR,ARHGEF9,ASB12,EDA2R,FAAH2,HEPH,LAS1L,MSN,MTMR8,SPIN4,VSIG4,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AA.A017.01A	23	57336979	65478665	104	0.3448	NEUTRAL	NA	14	"AMER1,ARHGEF9,ASB12,FAAH2,HEPH,LAS1L,MSN,MTMR8,SPIN4,VSIG4,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.F4.6460	23	57581724	93268730	5761	0.1146	NEUTRAL	NA	114	Too-Many
TCGA.AG.3591	23	57615207	62304483	90	0.2383	NEUTRAL	NA	2	"ZXDA,ZXDB"
TCGA.A6.6650	23	58066110	110502106	8410	0.2129	NEUTRAL	NA	214	Too-Many
TCGA.AG.3881	23	58287847	154925044	21075	0.2864	NEUTRAL	NA	494	Too-Many
TCGA.D5.5538	23	58496484	63427952	73	-0.487	NEUTRAL	NA	3	"AMER1,ARHGEF9,SPIN4"
TCGA.QL.A97D	23	58496484	89881506	5103	-0.1418	NEUTRAL	NA	108	Too-Many
TCGA.AA.3811	23	61948488	67108439	638	-0.4447	NEUTRAL	NA	13	"AMER1,AR,ARHGEF9,ASB12,EDA2R,HEPH,LAS1L,MSN,MTMR8,SPIN4,VSIG4,ZC3H12B,ZC4H2"
TCGA.AZ.6607	23	61948488	69679206	1207	-0.3463	NEUTRAL	NA	32	"AMER1,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,DLG3,EDA,EDA2R,EFNB1,FAM155B,GDPD2,HEPH,IGBP1,KIF4A,LAS1L,MSN,MTMR8,OPHN1,OTUD6A,P2RY4,PDZD11,PJA1,RAB41,SPIN4,STARD8,VSIG4,YIPF6,ZC3H12B,ZC4H2"
TCGA.F5.6465	23	62021732	81849635	3123	0.3784	NEUTRAL	NA	95	"ABCB7,ACRC,AMER1,AR,ARHGEF9,ARR3,ASB12,ATP7A,ATRX,AWAT1,AWAT2,BRWD3,CDX4,CHIC1,CITED1,COX7B,CXCR3,CXorf49,CXorf49B,CXorf65,CYSLTR1,DGAT2L6,DLG3,DMRTC1,DMRTC1B,EDA,EDA2R,EFNB1,ERCC6L,FAM155B,FAM46D,FGF16,FLJ44635,FOXO4,GDPD2,GJB1,GPR174,HDAC8,HEPH,HMGN5,IGBP1,IL2RG,ITGB1BP2,ITM2A,KIAA2022,KIF4A,LAS1L,LPAR4,MAGEE1,MAGEE2,MAGT1,MED12,MSN,MTMR8,NAP1L2,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY10,P2RY4,PABPC1L2A,PABPC1L2B,PBDC1,PDZD11,PGAM4,PGK1,PHKA1,PIN4,PJA1,RAB41,RGAG4,RLIM,RPS4X,SH3BGRL,SLC16A2,SLC7A3,SNX12,SPIN4,STARD8,TAF1,TAF9B,TBX22,TEX11,UPRT,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZCCHC13,ZCCHC5,ZDHHC15,ZMYM3"
TCGA.DM.A280	23	62058619	154925044	20975	0.0258	NEUTRAL	NA	494	Too-Many
TCGA.AA.A01T	23	62210143	154925044	21038	0.301	NEUTRAL	NA	494	Too-Many
TCGA.AG.A01W.01A	23	62774602	65395391	97	0.0165	NEUTRAL	NA	10	"AMER1,ARHGEF9,ASB12,HEPH,LAS1L,MSN,MTMR8,VSIG4,ZC3H12B,ZC4H2"
TCGA.SS.A7HO	23	62777430	74494482	1765	-0.4829	NEUTRAL	NA	71	"ABCB7,ACRC,AMER1,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,CDX4,CHIC1,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,DMRTC1,DMRTC1B,EDA,EDA2R,EFNB1,ERCC6L,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,HEPH,IGBP1,IL2RG,ITGB1BP2,KIAA2022,KIF4A,LAS1L,MED12,MSN,MTMR8,NAP1L2,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PABPC1L2A,PABPC1L2B,PDZD11,PHKA1,PIN4,PJA1,RAB41,RGAG4,RLIM,RPS4X,SLC16A2,SLC7A3,SNX12,STARD8,TAF1,TEX11,UPRT,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZCCHC13,ZMYM3"
TCGA.AG.3909.01A	23	62857886	69495925	206	0.1844	NEUTRAL	NA	26	"AMER1,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAM155B,HEPH,IGBP1,LAS1L,MSN,MTMR8,OPHN1,OTUD6A,P2RY4,PJA1,STARD8,VSIG4,YIPF6,ZC3H12B,ZC4H2"
TCGA.A6.6654	23	62884799	65023943	210	-0.3639	NEUTRAL	NA	8	"AMER1,ARHGEF9,ASB12,LAS1L,MSN,MTMR8,ZC3H12B,ZC4H2"
TCGA.CK.5914.01A	23	62974087	63548632	12	0.367	NEUTRAL	NA	4	"AMER1,ARHGEF9,ASB12,MTMR8"
TCGA.3L.AA1B	23	63154895	63812455	76	0.023	NEUTRAL	NA	3	"AMER1,ASB12,MTMR8"
TCGA.F5.6811.01A	23	63485227	63531860	6	0.1233	NEUTRAL	NA	1	MTMR8
TCGA.AF.3914.01A	23	63564906	63579238	6	-0.2209	NEUTRAL	NA	1	MTMR8
TCGA.AF.3914.01A	23	63615135	64752378	21	0.2213	NEUTRAL	NA	4	"LAS1L,MTMR8,ZC3H12B,ZC4H2"
TCGA.AZ.4614	23	63734857	87611072	4504	-0.0057	NEUTRAL	NA	101	Too-Many
TCGA.F5.6811.01A	23	64054338	71984775	551	-0.3424	NEUTRAL	NA	54	"ACRC,AR,ARR3,AWAT1,AWAT2,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,EDA,EDA2R,EFNB1,ERCC6L,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,HEPH,IGBP1,IL2RG,ITGB1BP2,KIF4A,LAS1L,MED12,MSN,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PDZD11,PHKA1,PIN4,PJA1,RAB41,RGAG4,RPS4X,SLC7A3,SNX12,STARD8,TAF1,TEX11,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZMYM3"
TCGA.A6.A56B	23	64175738	64308593	10	-0.3993	NEUTRAL	NA	1	ZC4H2
TCGA.AA.A02H.01A	23	64196161	64947634	21	-0.3852	NEUTRAL	NA	4	"LAS1L,MSN,ZC3H12B,ZC4H2"
TCGA.AZ.4684.01A	23	64196161	69749636	255	0.1604	NEUTRAL	NA	28	"AR,ARR3,AWAT1,AWAT2,DGAT2L6,DLG3,EDA,EDA2R,EFNB1,FAM155B,GDPD2,HEPH,IGBP1,KIF4A,LAS1L,MSN,OPHN1,OTUD6A,P2RY4,PDZD11,PJA1,RAB41,STARD8,TEX11,VSIG4,YIPF6,ZC3H12B,ZC4H2"
TCGA.CK.5914.01A	23	64744373	64887618	10	0.1537	NEUTRAL	NA	2	"LAS1L,MSN"
TCGA.AF.3914.01A	23	64753442	64887618	3	-0.3707	NEUTRAL	NA	2	"LAS1L,MSN"
TCGA.AA.A02H.01A	23	64949313	67292943	58	0.3329	NEUTRAL	NA	6	"AR,EDA2R,HEPH,MSN,OPHN1,VSIG4"
TCGA.A6.6654	23	65041827	76877876	1961	-0.0006	NEUTRAL	NA	69	"ABCB7,ACRC,AR,ARR3,ATRX,AWAT1,AWAT2,CDX4,CHIC1,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,DMRTC1,DMRTC1B,EDA,EDA2R,EFNB1,ERCC6L,FAM155B,FGF16,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,HEPH,IGBP1,IL2RG,ITGB1BP2,KIAA2022,KIF4A,MAGEE1,MAGEE2,MED12,NAP1L2,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PABPC1L2A,PABPC1L2B,PBDC1,PDZD11,PHKA1,PIN4,PJA1,RAB41,RGAG4,RLIM,RPS4X,SLC16A2,SLC7A3,SNX12,STARD8,TAF1,TEX11,UPRT,VSIG4,YIPF6,ZCCHC13,ZDHHC15,ZMYM3"
TCGA.AG.3611.01A	23	65238666	68060115	86	0.1867	NEUTRAL	NA	8	"AR,EDA2R,EFNB1,HEPH,OPHN1,STARD8,VSIG4,YIPF6"
TCGA.AG.A01L.01A	23	65247825	69497861	132	0.1534	NEUTRAL	NA	18	"AR,ARR3,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAM155B,HEPH,IGBP1,OPHN1,OTUD6A,P2RY4,PJA1,STARD8,VSIG4,YIPF6"
TCGA.AG.3891.01A	23	65252268	65426990	16	-0.4901	NEUTRAL	NA	2	"HEPH,VSIG4"
TCGA.CK.5914.01A	23	65408150	65426990	10	0.3778	NEUTRAL	NA	1	HEPH
TCGA.AG.3891.01A	23	65427925	71791836	445	0.0596	NEUTRAL	NA	48	"ACRC,AR,ARR3,AWAT1,AWAT2,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,EDA,EDA2R,EFNB1,ERCC6L,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,HEPH,IGBP1,IL2RG,ITGB1BP2,KIF4A,MED12,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PDZD11,PIN4,PJA1,RAB41,RGAG4,RPS4X,SLC7A3,SNX12,STARD8,TAF1,TEX11,YIPF6,ZMYM3"
TCGA.A6.A56B	23	66170499	154925044	20200	0.3268	NEUTRAL	NA	482	Too-Many
TCGA.3L.AA1B	23	66638753	67954837	224	0.0471	NEUTRAL	NA	4	"AR,OPHN1,STARD8,YIPF6"
TCGA.AG.A01N.01A	23	66764988	67414242	21	0.3434	NEUTRAL	NA	2	"AR,OPHN1"
TCGA.AG.A00Y.01A	23	66788773	71417208	391	0.327	NEUTRAL	NA	42	"ACRC,AR,ARR3,AWAT1,AWAT2,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,EDA,EFNB1,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,IGBP1,IL2RG,ITGB1BP2,KIF4A,MED12,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PDZD11,PIN4,PJA1,RAB41,RGAG4,SLC7A3,SNX12,STARD8,TAF1,TEX11,YIPF6,ZMYM3"
TCGA.AG.A01W.01A	23	66854006	69406632	105	-0.0907	NEUTRAL	NA	12	"AR,AWAT2,DGAT2L6,EDA,EFNB1,FAM155B,IGBP1,OPHN1,OTUD6A,PJA1,STARD8,YIPF6"
TCGA.AA.3941	23	66980138	75407179	1375	0.0495	NEUTRAL	NA	62	"ABCB7,ACRC,ARR3,AWAT1,AWAT2,CDX4,CHIC1,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,DMRTC1,DMRTC1B,EDA,EFNB1,ERCC6L,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,IGBP1,IL2RG,ITGB1BP2,KIAA2022,KIF4A,MAGEE2,MED12,NAP1L2,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PABPC1L2A,PABPC1L2B,PBDC1,PDZD11,PHKA1,PIN4,PJA1,RAB41,RGAG4,RLIM,RPS4X,SLC16A2,SLC7A3,SNX12,STARD8,TAF1,TEX11,UPRT,YIPF6,ZCCHC13,ZDHHC15,ZMYM3"
TCGA.AA.3982	23	67108439	71593010	843	0.3527	NEUTRAL	NA	45	"ACRC,ARR3,AWAT1,AWAT2,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,EDA,EFNB1,ERCC6L,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,IGBP1,IL2RG,ITGB1BP2,KIF4A,MED12,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PDZD11,PIN4,PJA1,RAB41,RGAG4,RPS4X,SLC7A3,SNX12,STARD8,TAF1,TEX11,YIPF6,ZMYM3"
TCGA.AA.3811	23	67123771	71587241	869	0.0157	NEUTRAL	NA	45	"ACRC,ARR3,AWAT1,AWAT2,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,EDA,EFNB1,ERCC6L,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,IGBP1,IL2RG,ITGB1BP2,KIF4A,MED12,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PDZD11,PIN4,PJA1,RAB41,RGAG4,RPS4X,SLC7A3,SNX12,STARD8,TAF1,TEX11,YIPF6,ZMYM3"
TCGA.CK.5914.01A	23	67316671	68840668	50	0.1193	NEUTRAL	NA	7	"EDA,EFNB1,FAM155B,OPHN1,PJA1,STARD8,YIPF6"
TCGA.AA.A02H.01A	23	67316671	69478339	80	-0.1915	NEUTRAL	NA	13	"AWAT1,AWAT2,DGAT2L6,EDA,EFNB1,FAM155B,IGBP1,OPHN1,OTUD6A,P2RY4,PJA1,STARD8,YIPF6"
TCGA.AA.A00N.01A	23	67331669	69370023	67	0.2845	NEUTRAL	NA	10	"AWAT2,EDA,EFNB1,FAM155B,IGBP1,OPHN1,OTUD6A,PJA1,STARD8,YIPF6"
TCGA.AA.3850	23	67405685	68614137	264	0.36145	NEUTRAL	NA	5	"EFNB1,OPHN1,PJA1,STARD8,YIPF6"
TCGA.AA.A010.01A	23	67426364	68381101	36	-0.1007	NEUTRAL	NA	5	"EFNB1,OPHN1,PJA1,STARD8,YIPF6"
TCGA.AG.A01N.01A	23	67426364	70360438	252	-0.2054	NEUTRAL	NA	26	"ARR3,AWAT1,AWAT2,CXorf65,DGAT2L6,DLG3,EDA,EFNB1,FAM155B,FOXO4,GDPD2,IGBP1,IL2RG,KIF4A,MED12,OPHN1,OTUD6A,P2RY4,PDZD11,PJA1,RAB41,SLC7A3,SNX12,STARD8,TEX11,YIPF6"
TCGA.AA.A017.01A	23	67426364	72674167	436	-0.0835	NEUTRAL	NA	52	"ACRC,ARR3,AWAT1,AWAT2,CDX4,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,DMRTC1,DMRTC1B,EDA,EFNB1,ERCC6L,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,IGBP1,IL2RG,ITGB1BP2,KIF4A,MED12,NAP1L2,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PABPC1L2A,PABPC1L2B,PDZD11,PHKA1,PIN4,PJA1,RAB41,RGAG4,RPS4X,SLC7A3,SNX12,STARD8,TAF1,TEX11,YIPF6,ZMYM3"
TCGA.AA.A01Q.01A	23	67932694	68725095	18	-0.4451	NEUTRAL	NA	4	"EFNB1,FAM155B,PJA1,STARD8"
TCGA.A6.3808.01A	23	67937017	105883745	1163	-0.3143	NEUTRAL	NA	170	Too-Many
TCGA.AA.3844	23	68187281	68188507	7	-0.4817	NEUTRAL	NA	0	None
TCGA.AA.3844	23	68221349	68233128	7	-0.3466	NEUTRAL	NA	0	None
TCGA.AG.3611.01A	23	68381101	68840668	6	-0.2634	NEUTRAL	NA	3	"EDA,FAM155B,PJA1"
TCGA.AA.3844	23	68600290	69184997	131	0.3211	NEUTRAL	NA	2	"EDA,FAM155B"
TCGA.AA.3850	23	68623049	68978256	75	-0.17255	NEUTRAL	NA	2	"EDA,FAM155B"
TCGA.AA.A01Q.01A	23	68748799	69646214	99	0.1646	NEUTRAL	NA	13	"ARR3,AWAT1,AWAT2,DGAT2L6,EDA,FAM155B,GDPD2,IGBP1,KIF4A,OTUD6A,P2RY4,PDZD11,RAB41"
TCGA.AA.A010.01A	23	68836132	69496243	43	-0.3614	NEUTRAL	NA	8	"ARR3,AWAT1,AWAT2,DGAT2L6,EDA,IGBP1,OTUD6A,P2RY4"
TCGA.AA.3850	23	69085255	69836220	158	0.18365	NEUTRAL	NA	14	"ARR3,AWAT1,AWAT2,DGAT2L6,DLG3,EDA,GDPD2,IGBP1,KIF4A,OTUD6A,P2RY4,PDZD11,RAB41,TEX11"
TCGA.AA.A00J.01A	23	69176870	69424785	28	0.364	NEUTRAL	NA	5	"AWAT2,DGAT2L6,EDA,IGBP1,OTUD6A"
TCGA.AG.3611.01A	23	69176870	102884858	954	0.2233	NEUTRAL	NA	148	Too-Many
TCGA.AA.3844	23	69191229	69197208	8	-0.3995	NEUTRAL	NA	1	EDA
TCGA.CK.5914.01A	23	69282338	69397384	8	-0.0143	NEUTRAL	NA	3	"DGAT2L6,IGBP1,OTUD6A"
TCGA.AG.3612	23	69407738	149472749	18514	-0.0118	NEUTRAL	NA	370	Too-Many
TCGA.AG.A01W.01A	23	69423608	69569405	42	-0.0296	NEUTRAL	NA	7	"ARR3,AWAT1,DGAT2L6,KIF4A,P2RY4,PDZD11,RAB41"
TCGA.AA.A00J.01A	23	69459533	69496243	8	-0.1268	NEUTRAL	NA	3	"ARR3,AWAT1,P2RY4"
TCGA.CK.5914.01A	23	69459533	69595901	44	-0.4287	NEUTRAL	NA	6	"ARR3,AWAT1,KIF4A,P2RY4,PDZD11,RAB41"
TCGA.AA.A00N.01A	23	69489178	69502316	16	-0.3067	NEUTRAL	NA	2	"ARR3,RAB41"
TCGA.AG.A01J.01A	23	69489178	70784424	274	-0.0804	NEUTRAL	NA	20	"ARR3,CXorf65,DLG3,FOXO4,GDPD2,GJB1,IL2RG,ITGB1BP2,KIF4A,MED12,NLGN3,NONO,OGT,PDZD11,RAB41,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.AA.A010.01A	23	69497203	69516801	23	0.0348	NEUTRAL	NA	4	"ARR3,KIF4A,PDZD11,RAB41"
TCGA.AA.A01C.01A	23	69497509	69509049	20	-0.3663	NEUTRAL	NA	3	"ARR3,PDZD11,RAB41"
TCGA.AG.A01L.01A	23	69498336	69510311	19	-0.3985	NEUTRAL	NA	4	"ARR3,KIF4A,PDZD11,RAB41"
TCGA.AG.A016.01A	23	69504379	100629477	890	-0.1542	NEUTRAL	NA	103	Too-Many
TCGA.AG.A015.01A	23	69504379	102863975	993	-0.0749	NEUTRAL	NA	139	Too-Many
TCGA.AA.A00J.01A	23	69507904	69522100	8	-0.0453	NEUTRAL	NA	2	"KIF4A,PDZD11"
TCGA.AG.A025.01A	23	69509049	71496988	292	-0.1729	NEUTRAL	NA	28	"ACRC,CXCR3,CXorf49,CXorf49B,CXorf65,DLG3,ERCC6L,FLJ44635,FOXO4,GDPD2,GJB1,IL2RG,ITGB1BP2,KIF4A,MED12,NHSL2,NLGN3,NONO,OGT,PDZD11,PIN4,RGAG4,RPS4X,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.AA.A01C.01A	23	69510311	155239443	3042	0.345	NEUTRAL	NA	467	Too-Many
TCGA.AG.A01L.01A	23	69516801	79279515	513	0.1928	NEUTRAL	NA	62	"ABCB7,ACRC,ATP7A,ATRX,CDX4,CHIC1,CITED1,COX7B,CXCR3,CXorf49,CXorf49B,CXorf65,CYSLTR1,DLG3,DMRTC1,DMRTC1B,ERCC6L,FGF16,FLJ44635,FOXO4,GDPD2,GJB1,GPR174,HDAC8,IL2RG,ITGB1BP2,ITM2A,KIAA2022,KIF4A,LPAR4,MAGEE1,MAGEE2,MAGT1,MED12,NAP1L2,NHSL2,NLGN3,NONO,OGT,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,PHKA1,PIN4,RGAG4,RLIM,RPS4X,SLC16A2,SLC7A3,SNX12,TAF1,TAF9B,TBX22,TEX11,UPRT,ZCCHC13,ZCCHC5,ZDHHC15,ZMYM3"
TCGA.AG.3906.01A	23	69549208	69646466	29	0.199	NEUTRAL	NA	2	"GDPD2,KIF4A"
TCGA.AG.4009.01A	23	69563501	69624518	13	-0.0331	NEUTRAL	NA	1	KIF4A
TCGA.AA.A00N.01A	23	69606422	69646699	20	-0.1767	NEUTRAL	NA	2	"GDPD2,KIF4A"
TCGA.AG.3909.01A	23	69606997	69646699	19	0.0462	NEUTRAL	NA	2	"GDPD2,KIF4A"
TCGA.AG.A01W.01A	23	69615674	70016523	39	0.0318	NEUTRAL	NA	4	"DLG3,GDPD2,KIF4A,TEX11"
TCGA.AA.A00J.01A	23	69622364	69645561	12	0.0079	NEUTRAL	NA	2	"GDPD2,KIF4A"
TCGA.AG.A02X.01A	23	69637691	120181497	1725	-0.2754	NEUTRAL	NA	246	Too-Many
TCGA.AA.A00D.01A	23	69644808	69646466	6	0.0727	NEUTRAL	NA	1	GDPD2
TCGA.AA.A01Q.01A	23	69646466	69674022	15	-0.4182	NEUTRAL	NA	2	"DLG3,GDPD2"
TCGA.CK.5914.01A	23	69646466	69674022	17	-0.2229	NEUTRAL	NA	2	"DLG3,GDPD2"
TCGA.AA.A00J.01A	23	69649321	155239443	2717	0.052	NEUTRAL	NA	466	Too-Many
TCGA.AF.3914.01A	23	69652690	69674022	10	-0.3937	NEUTRAL	NA	2	"DLG3,GDPD2"
TCGA.AA.A01Q.01A	23	69698962	69902477	27	-0.0216	NEUTRAL	NA	2	"DLG3,TEX11"
TCGA.AG.3906.01A	23	69698962	70838194	220	0.1836	NEUTRAL	NA	17	"ACRC,CXCR3,CXorf65,DLG3,FOXO4,GJB1,IL2RG,ITGB1BP2,MED12,NLGN3,NONO,OGT,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.CK.5914.01A	23	69811556	70470975	120	-0.0847	NEUTRAL	NA	10	"CXorf65,FOXO4,GJB1,IL2RG,MED12,NLGN3,SLC7A3,SNX12,TEX11,ZMYM3"
TCGA.AA.A010.01A	23	69825202	69844645	6	0.0814	NEUTRAL	NA	1	TEX11
TCGA.AG.4009.01A	23	69871253	69945064	6	0.0543	NEUTRAL	NA	1	TEX11
TCGA.AA.3850	23	69871591	71587241	256	0.29205	NEUTRAL	NA	26	"ACRC,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,ERCC6L,FLJ44635,FOXO4,GJB1,HDAC8,IL2RG,ITGB1BP2,MED12,NHSL2,NLGN3,NONO,OGT,PIN4,RGAG4,RPS4X,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.AZ.4684.01A	23	69898608	71571536	231	0.0431	NEUTRAL	NA	26	"ACRC,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,ERCC6L,FLJ44635,FOXO4,GJB1,HDAC8,IL2RG,ITGB1BP2,MED12,NHSL2,NLGN3,NONO,OGT,PIN4,RGAG4,RPS4X,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.AA.A01Q.01A	23	69942408	70320517	25	0.2692	NEUTRAL	NA	4	"FOXO4,SLC7A3,SNX12,TEX11"
TCGA.AG.3909.01A	23	69945064	70338568	40	0.0027	NEUTRAL	NA	7	"CXorf65,FOXO4,IL2RG,MED12,SLC7A3,SNX12,TEX11"
TCGA.AG.A01W.01A	23	70044255	70268597	51	-0.3117	NEUTRAL	NA	2	"SLC7A3,TEX11"
TCGA.AA.A010.01A	23	70080670	70149468	13	0.1214	NEUTRAL	NA	2	"SLC7A3,TEX11"
TCGA.AG.A00C.01A	23	70080670	70149468	13	-0.0064	NEUTRAL	NA	2	"SLC7A3,TEX11"
TCGA.AG.4009.01A	23	70149468	70287975	5	-0.1191	NEUTRAL	NA	2	"SLC7A3,SNX12"
TCGA.AA.3930.01A	23	70281641	70354920	50	0.3275	NEUTRAL	NA	5	"CXorf65,FOXO4,IL2RG,MED12,SNX12"
TCGA.AG.A01W.01A	23	70284325	70381318	14	-0.4168	NEUTRAL	NA	6	"CXorf65,FOXO4,IL2RG,MED12,NLGN3,SNX12"
TCGA.AA.A010.01A	23	70316328	70352218	43	-0.2939	NEUTRAL	NA	4	"CXorf65,FOXO4,IL2RG,MED12"
TCGA.AA.A01Q.01A	23	70323788	70348917	30	-0.4592	NEUTRAL	NA	3	"CXorf65,IL2RG,MED12"
TCGA.AA.A00N.01A	23	70339190	70472398	69	-0.3096	NEUTRAL	NA	4	"GJB1,MED12,NLGN3,ZMYM3"
TCGA.AG.3909.01A	23	70339190	70472398	68	-0.4942	NEUTRAL	NA	4	"GJB1,MED12,NLGN3,ZMYM3"
TCGA.AA.A01Q.01A	23	70349502	70461983	26	0.084	NEUTRAL	NA	4	"GJB1,MED12,NLGN3,ZMYM3"
TCGA.AA.A010.01A	23	70352678	70514085	46	0.0066	NEUTRAL	NA	5	"GJB1,MED12,NLGN3,NONO,ZMYM3"
TCGA.AA.3930.01A	23	70356103	74334543	250	0.0194	NEUTRAL	NA	33	"ABCB7,ACRC,CDX4,CHIC1,CITED1,CXCR3,CXorf49,CXorf49B,DMRTC1,DMRTC1B,ERCC6L,FLJ44635,GJB1,HDAC8,ITGB1BP2,KIAA2022,MED12,NAP1L2,NHSL2,NLGN3,NONO,OGT,PABPC1L2A,PABPC1L2B,PHKA1,PIN4,RGAG4,RLIM,RPS4X,SLC16A2,TAF1,ZCCHC13,ZMYM3"
TCGA.AG.A01N.01A	23	70367589	100650625	755	0.029	NEUTRAL	NA	93	"ABCB7,ACRC,APOOL,ARL13A,ATP7A,ATRX,BRWD3,BTK,CDX4,CENPI,CHIC1,CHM,CITED1,COX7B,CPXCR1,CSTF2,CXCR3,CXorf49,CXorf49B,CYLC1,CYSLTR1,DACH2,DIAPH2,DMRTC1,DMRTC1B,DRP2,ERCC6L,FAM133A,FAM46D,FGF16,FLJ44635,GJB1,GPR174,HDAC8,HDX,HMGN5,ITGB1BP2,ITM2A,KIAA2022,KLHL4,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,NAP1L3,NHSL2,NLGN3,NONO,NOX1,OGT,P2RY10,PABPC1L2A,PABPC1L2B,PABPC5,PBDC1,PCDH11X,PCDH19,PGAM4,PGK1,PHKA1,PIN4,POF1B,POU3F4,RGAG4,RLIM,RPA4,RPL36A,RPL36A-HNRNPH2,RPS4X,RPS6KA6,SATL1,SH3BGRL,SLC16A2,SRPX2,SYTL4,TAF1,TAF7L,TAF9B,TBX22,TGIF2LX,TIMM8A,TMEM35,TNMD,TRMT2B,TSPAN6,UPRT,XKRX,ZCCHC13,ZCCHC5,ZDHHC15,ZMYM3,ZNF711"
TCGA.AG.A01W.01A	23	70381883	70389157	13	0.194	NEUTRAL	NA	1	NLGN3
TCGA.AG.A01W.01A	23	70411688	70747220	82	-0.2882	NEUTRAL	NA	5	"GJB1,ITGB1BP2,NONO,TAF1,ZMYM3"
TCGA.AA.A01Q.01A	23	70462783	70470975	17	-0.3858	NEUTRAL	NA	1	ZMYM3
TCGA.AA.A01Q.01A	23	70471348	70621330	39	0.3572	NEUTRAL	NA	4	"ITGB1BP2,NONO,TAF1,ZMYM3"
TCGA.AG.3909.01A	23	70510447	70586146	16	0.375	NEUTRAL	NA	3	"ITGB1BP2,NONO,TAF1"
TCGA.AA.A00N.01A	23	70510447	70626451	38	0.2878	NEUTRAL	NA	3	"ITGB1BP2,NONO,TAF1"
TCGA.AA.A010.01A	23	70516414	70838194	81	-0.266	NEUTRAL	NA	6	"ACRC,CXCR3,ITGB1BP2,NONO,OGT,TAF1"
TCGA.AG.3909.01A	23	70587307	70621330	21	0.0095	NEUTRAL	NA	1	TAF1
TCGA.CK.5914.01A	23	70613866	70627784	7	0.0338	NEUTRAL	NA	1	TAF1
TCGA.AG.3909.01A	23	70626451	70627784	3	-0.2717	NEUTRAL	NA	1	TAF1
TCGA.AA.A01Q.01A	23	70626451	70679350	11	-0.2324	NEUTRAL	NA	1	TAF1
TCGA.CK.5914.01A	23	70678953	71492584	60	-1.00E-04	NEUTRAL	NA	12	"ACRC,CXCR3,CXorf49,CXorf49B,ERCC6L,FLJ44635,NHSL2,OGT,PIN4,RGAG4,RPS4X,TAF1"
TCGA.AA.A01Q.01A	23	70680437	70787349	18	0.3584	NEUTRAL	NA	2	"OGT,TAF1"
TCGA.AA.A00N.01A	23	70683635	70777326	12	-0.0072	NEUTRAL	NA	2	"OGT,TAF1"
TCGA.AG.3909.01A	23	70683635	70787801	18	-0.054	NEUTRAL	NA	2	"OGT,TAF1"
TCGA.AG.A01W.01A	23	70748884	71273624	12	0.2632	NEUTRAL	NA	6	"ACRC,CXCR3,CXorf49,CXorf49B,NHSL2,OGT"
TCGA.AA.A024.01A	23	70764383	84347360	387	0.0051	NEUTRAL	NA	56	"ABCB7,ACRC,APOOL,ATP7A,ATRX,BRWD3,CDX4,CHIC1,CITED1,COX7B,CXCR3,CXorf49,CXorf49B,CYLC1,CYSLTR1,DMRTC1,DMRTC1B,ERCC6L,FAM46D,FGF16,FLJ44635,GPR174,HDAC8,HDX,HMGN5,ITM2A,KIAA2022,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,NHSL2,OGT,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,PHKA1,PIN4,POU3F4,RGAG4,RLIM,RPS4X,RPS6KA6,SATL1,SH3BGRL,SLC16A2,TAF9B,TBX22,UPRT,ZCCHC13,ZCCHC5,ZDHHC15"
TCGA.AG.A01J.01A	23	70787349	77394986	255	0.2705	NEUTRAL	NA	39	"ABCB7,ACRC,ATP7A,ATRX,CDX4,CHIC1,CITED1,COX7B,CXCR3,CXorf49,CXorf49B,DMRTC1,DMRTC1B,ERCC6L,FGF16,FLJ44635,HDAC8,KIAA2022,MAGEE1,MAGEE2,MAGT1,NAP1L2,NHSL2,OGT,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,PHKA1,PIN4,RGAG4,RLIM,RPS4X,SLC16A2,TAF9B,UPRT,ZCCHC13,ZDHHC15"
TCGA.AA.A01Q.01A	23	70787801	71933593	81	0.0025	NEUTRAL	NA	14	"ACRC,CITED1,CXCR3,CXorf49,CXorf49B,ERCC6L,FLJ44635,HDAC8,NHSL2,OGT,PHKA1,PIN4,RGAG4,RPS4X"
TCGA.F4.6570	23	71094932	73389787	296	-0.0268	NEUTRAL	NA	16	"CDX4,CHIC1,CITED1,DMRTC1,DMRTC1B,ERCC6L,FLJ44635,HDAC8,NAP1L2,NHSL2,PABPC1L2A,PABPC1L2B,PHKA1,PIN4,RGAG4,RPS4X"
TCGA.AG.A01W.01A	23	71274977	71413674	20	-0.2158	NEUTRAL	NA	4	"FLJ44635,NHSL2,PIN4,RGAG4"
TCGA.AY.A71X	23	71331726	154925044	19284	0.3088	NEUTRAL	NA	444	Too-Many
TCGA.AG.3909.01A	23	71350914	71458641	13	-0.2027	NEUTRAL	NA	5	"ERCC6L,FLJ44635,NHSL2,PIN4,RGAG4"
TCGA.AG.3906.01A	23	71417208	71571536	16	0.2694	NEUTRAL	NA	5	"CITED1,ERCC6L,HDAC8,PIN4,RPS4X"
TCGA.AG.A00Y.01A	23	71424847	155239443	2788	0.0693	NEUTRAL	NA	443	Too-Many
TCGA.AG.A01W.01A	23	71438278	71981988	46	0.2384	NEUTRAL	NA	6	"CITED1,ERCC6L,HDAC8,PHKA1,PIN4,RPS4X"
TCGA.CK.5914.01A	23	71496988	71791836	17	0.1766	NEUTRAL	NA	3	"CITED1,HDAC8,RPS4X"
TCGA.AG.A00C.01A	23	71496988	71877377	40	0.1962	NEUTRAL	NA	4	"CITED1,HDAC8,PHKA1,RPS4X"
TCGA.AA.A02H.01A	23	71521526	96354691	432	-0.1245	NEUTRAL	NA	58	"ABCB7,APOOL,ATP7A,ATRX,BRWD3,CDX4,CHIC1,CHM,CITED1,COX7B,CPXCR1,CYLC1,CYSLTR1,DACH2,DIAPH2,DMRTC1,DMRTC1B,FAM133A,FAM46D,FGF16,GPR174,HDAC8,HDX,HMGN5,ITM2A,KIAA2022,KLHL4,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,NAP1L3,P2RY10,PABPC1L2A,PABPC1L2B,PABPC5,PBDC1,PCDH11X,PGAM4,PGK1,PHKA1,POF1B,POU3F4,RLIM,RPA4,RPS6KA6,SATL1,SH3BGRL,SLC16A2,TAF9B,TBX22,TGIF2LX,UPRT,ZCCHC13,ZCCHC5,ZDHHC15,ZNF711"
TCGA.AG.A025.01A	23	71521526	106143927	834	0.0898	NEUTRAL	NA	133	Too-Many
TCGA.AG.3909.01A	23	71549444	71885953	38	-0.0408	NEUTRAL	NA	2	"HDAC8,PHKA1"
TCGA.AA.3844	23	71593010	72932539	128	0.1181	NEUTRAL	NA	9	"CDX4,CHIC1,DMRTC1,DMRTC1B,HDAC8,NAP1L2,PABPC1L2A,PABPC1L2B,PHKA1"
TCGA.AA.3982	23	71646192	86453330	2684	-0.2347	NEUTRAL	NA	48	"ABCB7,APOOL,ATP7A,ATRX,BRWD3,CDX4,CHIC1,CHM,COX7B,CYLC1,CYSLTR1,DACH2,DMRTC1,DMRTC1B,FAM46D,FGF16,GPR174,HDAC8,HDX,HMGN5,ITM2A,KIAA2022,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,PHKA1,POF1B,POU3F4,RLIM,RPS6KA6,SATL1,SH3BGRL,SLC16A2,TAF9B,TBX22,UPRT,ZCCHC13,ZCCHC5,ZDHHC15,ZNF711"
TCGA.AG.3906.01A	23	71681815	71877377	34	-0.1306	NEUTRAL	NA	2	"HDAC8,PHKA1"
TCGA.AG.3891.01A	23	71792454	71887188	26	-0.3069	NEUTRAL	NA	2	"HDAC8,PHKA1"
TCGA.CK.5914.01A	23	71870191	72674167	25	-0.2817	NEUTRAL	NA	7	"CDX4,DMRTC1,DMRTC1B,NAP1L2,PABPC1L2A,PABPC1L2B,PHKA1"
TCGA.AF.3914.01A	23	71887188	79937917	202	-0.1257	NEUTRAL	NA	35	"ABCB7,ATP7A,ATRX,BRWD3,CDX4,CHIC1,COX7B,CYSLTR1,DMRTC1,DMRTC1B,FAM46D,FGF16,GPR174,ITM2A,KIAA2022,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,PHKA1,RLIM,SLC16A2,TAF9B,TBX22,UPRT,ZCCHC13,ZCCHC5,ZDHHC15"
TCGA.AG.3906.01A	23	71933593	74598913	58	-0.1319	NEUTRAL	NA	15	"ABCB7,CDX4,CHIC1,DMRTC1,DMRTC1B,KIAA2022,NAP1L2,PABPC1L2A,PABPC1L2B,PHKA1,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.F5.6811.01A	23	72011763	84396884	299	-0.3418	NEUTRAL	NA	42	"ABCB7,APOOL,ATP7A,ATRX,BRWD3,CDX4,CHIC1,COX7B,CYLC1,CYSLTR1,DMRTC1,DMRTC1B,FAM46D,FGF16,GPR174,HDX,HMGN5,ITM2A,KIAA2022,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,POU3F4,RLIM,RPS6KA6,SATL1,SH3BGRL,SLC16A2,TAF9B,TBX22,UPRT,ZCCHC13,ZCCHC5,ZDHHC15"
TCGA.AG.A01W.01A	23	72011776	76971284	118	0.2083	NEUTRAL	NA	19	"ABCB7,ATRX,CDX4,CHIC1,DMRTC1,DMRTC1B,FGF16,KIAA2022,MAGEE1,MAGEE2,NAP1L2,PABPC1L2A,PABPC1L2B,PBDC1,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.AG.A00C.01A	23	72065285	79943505	205	0.2411	NEUTRAL	NA	34	"ABCB7,ATP7A,ATRX,BRWD3,CDX4,CHIC1,COX7B,CYSLTR1,DMRTC1,DMRTC1B,FAM46D,FGF16,GPR174,ITM2A,KIAA2022,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,RLIM,SLC16A2,TAF9B,TBX22,UPRT,ZCCHC13,ZCCHC5,ZDHHC15"
TCGA.AG.3909.01A	23	72092234	77359781	158	-0.091	NEUTRAL	NA	24	"ABCB7,ATP7A,ATRX,CDX4,CHIC1,COX7B,DMRTC1,DMRTC1B,FGF16,KIAA2022,MAGEE1,MAGEE2,MAGT1,NAP1L2,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.AA.A01Q.01A	23	72095410	79958927	206	0.1659	NEUTRAL	NA	34	"ABCB7,ATP7A,ATRX,BRWD3,CDX4,CHIC1,COX7B,CYSLTR1,DMRTC1,DMRTC1B,FAM46D,FGF16,GPR174,ITM2A,KIAA2022,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,RLIM,SLC16A2,TAF9B,TBX22,UPRT,ZCCHC13,ZCCHC5,ZDHHC15"
TCGA.AG.3891.01A	23	72432896	76972561	115	-0.199	NEUTRAL	NA	15	"ABCB7,ATRX,CDX4,CHIC1,FGF16,KIAA2022,MAGEE1,MAGEE2,NAP1L2,PBDC1,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.AA.A017.01A	23	72783074	76849118	82	0.3044	NEUTRAL	NA	13	"ABCB7,ATRX,CHIC1,FGF16,KIAA2022,MAGEE1,MAGEE2,PBDC1,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.CK.5914.01A	23	72899110	74280031	25	0.3318	NEUTRAL	NA	6	"ABCB7,CHIC1,KIAA2022,RLIM,SLC16A2,ZCCHC13"
TCGA.AA.3850	23	72972639	74156786	119	0.08395	NEUTRAL	NA	4	"KIAA2022,RLIM,SLC16A2,ZCCHC13"
TCGA.F4.6570	23	73864734	154925044	19312	0.1207	NEUTRAL	NA	425	Too-Many
TCGA.AA.3844	23	74048288	117280084	9332	0.1123	NEUTRAL	NA	162	Too-Many
TCGA.AA.3930.01A	23	74598913	77224959	80	-0.1908	NEUTRAL	NA	10	"ATP7A,ATRX,COX7B,FGF16,MAGEE1,MAGEE2,MAGT1,PBDC1,PGAM4,ZDHHC15"
TCGA.CK.5914.01A	23	74598913	78011307	122	0.1424	NEUTRAL	NA	15	"ATP7A,ATRX,COX7B,CYSLTR1,FGF16,LPAR4,MAGEE1,MAGEE2,MAGT1,PBDC1,PGAM4,PGK1,TAF9B,ZCCHC5,ZDHHC15"
TCGA.AG.3906.01A	23	74725568	99605577	340	-0.1273	NEUTRAL	NA	43	"APOOL,ATP7A,ATRX,BRWD3,CHM,COX7B,CPXCR1,CYLC1,CYSLTR1,DACH2,DIAPH2,FAM133A,FAM46D,FGF16,GPR174,HDX,HMGN5,ITM2A,KLHL4,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L3,P2RY10,PABPC5,PBDC1,PCDH11X,PCDH19,PGAM4,PGK1,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TAF9B,TBX22,TGIF2LX,ZCCHC5,ZDHHC15,ZNF711"
TCGA.AA.3941	23	75410637	93429577	3752	-0.4788	NEUTRAL	NA	37	"APOOL,ATP7A,ATRX,BRWD3,CHM,COX7B,CPXCR1,CYLC1,CYSLTR1,DACH2,FAM133A,FAM46D,FGF16,GPR174,HDX,HMGN5,ITM2A,KLHL4,LPAR4,MAGEE1,MAGT1,NAP1L3,P2RY10,PABPC5,PCDH11X,PGAM4,PGK1,POF1B,POU3F4,RPS6KA6,SATL1,SH3BGRL,TAF9B,TBX22,TGIF2LX,ZCCHC5,ZNF711"
TCGA.AG.A020	23	75532540	154925044	19011	0.0122	NEUTRAL	NA	419	Too-Many
TCGA.DC.6155	23	76135654	76144680	9	-0.3747	NEUTRAL	NA	0	None
TCGA.AG.3885	23	76151286	115575955	8399	-0.0096	NEUTRAL	NA	153	Too-Many
TCGA.AG.3591	23	76488343	78309402	156	-0.1285	NEUTRAL	NA	12	"ATP7A,ATRX,COX7B,CYSLTR1,FGF16,LPAR4,MAGT1,P2RY10,PGAM4,PGK1,TAF9B,ZCCHC5"
TCGA.AA.A017.01A	23	76854832	77296042	61	-0.1452	NEUTRAL	NA	5	"ATP7A,ATRX,COX7B,MAGT1,PGAM4"
TCGA.AA.A010.01A	23	76874257	77912468	80	-0.076	NEUTRAL	NA	9	"ATP7A,ATRX,COX7B,CYSLTR1,MAGT1,PGAM4,PGK1,TAF9B,ZCCHC5"
TCGA.AZ.4684.01A	23	76944264	77394986	59	0.0037	NEUTRAL	NA	7	"ATP7A,ATRX,COX7B,MAGT1,PGAM4,PGK1,TAF9B"
TCGA.AG.A01W.01A	23	76972902	77182699	32	-0.1903	NEUTRAL	NA	4	"ATP7A,ATRX,COX7B,MAGT1"
TCGA.AG.3891.01A	23	77084625	77160623	13	0.2674	NEUTRAL	NA	2	"COX7B,MAGT1"
TCGA.AG.A01W.01A	23	77184690	79864691	66	0.3001	NEUTRAL	NA	12	"ATP7A,CYSLTR1,FAM46D,GPR174,ITM2A,LPAR4,P2RY10,PGAM4,PGK1,TAF9B,TBX22,ZCCHC5"
TCGA.AG.3891.01A	23	77224369	100183007	342	-0.2129	NEUTRAL	NA	42	"APOOL,ATP7A,BRWD3,CHM,CPXCR1,CSTF2,CYLC1,CYSLTR1,DACH2,DIAPH2,FAM133A,FAM46D,GPR174,HDX,HMGN5,ITM2A,KLHL4,LPAR4,NAP1L3,NOX1,P2RY10,PABPC5,PCDH11X,PCDH19,PGAM4,PGK1,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,SRPX2,SYTL4,TAF9B,TBX22,TGIF2LX,TNMD,TSPAN6,XKRX,ZCCHC5,ZNF711"
TCGA.AA.3930.01A	23	77227102	77365292	24	0.1789	NEUTRAL	NA	2	"ATP7A,PGK1"
TCGA.SS.A7HO	23	77231334	77513602	22	-0.435	NEUTRAL	NA	3	"ATP7A,PGK1,TAF9B"
TCGA.A6.6654	23	77231334	108553133	6573	-0.2933	NEUTRAL	NA	123	Too-Many
TCGA.AA.A017.01A	23	77298066	96354691	240	0.2758	NEUTRAL	NA	33	"APOOL,ATP7A,BRWD3,CHM,CPXCR1,CYLC1,CYSLTR1,DACH2,DIAPH2,FAM133A,FAM46D,GPR174,HDX,HMGN5,ITM2A,KLHL4,LPAR4,NAP1L3,P2RY10,PABPC5,PCDH11X,PGK1,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TAF9B,TBX22,TGIF2LX,ZCCHC5,ZNF711"
TCGA.AA.3930.01A	23	77369229	84362627	137	-0.2775	NEUTRAL	NA	19	"APOOL,BRWD3,CYLC1,CYSLTR1,FAM46D,GPR174,HDX,HMGN5,ITM2A,LPAR4,P2RY10,PGK1,POU3F4,RPS6KA6,SATL1,SH3BGRL,TAF9B,TBX22,ZCCHC5"
TCGA.AG.3909.01A	23	77394986	79955414	37	-0.0902	NEUTRAL	NA	10	"BRWD3,CYSLTR1,FAM46D,GPR174,ITM2A,LPAR4,P2RY10,TAF9B,TBX22,ZCCHC5"
TCGA.AA.A010.01A	23	78616530	79282221	10	0.2531	NEUTRAL	NA	2	"ITM2A,TBX22"
TCGA.AA.3678	23	78983722	81454047	489	-0.4314	NEUTRAL	NA	5	"BRWD3,FAM46D,HMGN5,SH3BGRL,TBX22"
TCGA.AZ.4684.01A	23	79277721	79285979	8	-0.0044	NEUTRAL	NA	1	TBX22
TCGA.AG.A01L.01A	23	79285979	130222561	1559	0.1611	NEUTRAL	NA	213	Too-Many
TCGA.DM.A1HB	23	79481158	154925044	17455	0.007	NEUTRAL	NA	403	Too-Many
TCGA.AG.A01W.01A	23	79865854	83028145	31	-0.025	NEUTRAL	NA	4	"BRWD3,HMGN5,POU3F4,SH3BGRL"
TCGA.AA.3939.01A	23	79937917	80064743	35	0.0867	NEUTRAL	NA	1	BRWD3
TCGA.CK.5914.01A	23	79958927	79980382	10	-0.4873	NEUTRAL	NA	1	BRWD3
TCGA.AA.A01Q.01A	23	79960167	79974941	6	-0.4382	NEUTRAL	NA	1	BRWD3
TCGA.AA.A010.01A	23	79962884	83374846	52	-0.3696	NEUTRAL	NA	6	"BRWD3,CYLC1,HMGN5,POU3F4,RPS6KA6,SH3BGRL"
TCGA.AG.3909.01A	23	79978021	79991449	9	-0.4789	NEUTRAL	NA	1	BRWD3
TCGA.AA.A01Q.01A	23	79978021	80049094	13	0.0337	NEUTRAL	NA	1	BRWD3
TCGA.AF.3914.01A	23	79978021	86888732	134	-0.165	NEUTRAL	NA	14	"APOOL,BRWD3,CHM,CYLC1,DACH2,HDX,HMGN5,KLHL4,POF1B,POU3F4,RPS6KA6,SATL1,SH3BGRL,ZNF711"
TCGA.AG.A00C.01A	23	79984206	85166233	105	0.1928	NEUTRAL	NA	12	"APOOL,BRWD3,CHM,CYLC1,HDX,HMGN5,POF1B,POU3F4,RPS6KA6,SATL1,SH3BGRL,ZNF711"
TCGA.CK.5914.01A	23	79984206	99854507	204	0.3616	NEUTRAL	NA	24	"APOOL,BRWD3,CHM,CPXCR1,CYLC1,DACH2,DIAPH2,FAM133A,HDX,HMGN5,KLHL4,NAP1L3,PABPC5,PCDH11X,PCDH19,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TGIF2LX,TNMD,ZNF711"
TCGA.AG.3909.01A	23	79999482	84362627	67	-0.0508	NEUTRAL	NA	9	"APOOL,BRWD3,CYLC1,HDX,HMGN5,POU3F4,RPS6KA6,SATL1,SH3BGRL"
TCGA.AG.A014.01A	23	80047302	80064743	4	-0.1144	NEUTRAL	NA	1	BRWD3
TCGA.AA.A01S	23	80181867	154925044	18192	-0.01035	NEUTRAL	NA	401	Too-Many
TCGA.AA.3939.01A	23	80370118	99920482	204	0.3764	NEUTRAL	NA	25	"APOOL,CHM,CPXCR1,CYLC1,DACH2,DIAPH2,FAM133A,HDX,HMGN5,KLHL4,NAP1L3,PABPC5,PCDH11X,PCDH19,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,SRPX2,TGIF2LX,TNMD,TSPAN6,ZNF711"
TCGA.AA.A01Q.01A	23	80370118	108887211	700	0.1271	NEUTRAL	NA	115	Too-Many
TCGA.SS.A7HO	23	81057539	154925044	17728	-0.4912	NEUTRAL	NA	399	Too-Many
TCGA.A6.2686	23	81313200	81379449	24	-0.5086	NEUTRAL	NA	0	None
TCGA.A6.2686	23	81379498	141221283	14002	-0.0224	NEUTRAL	NA	274	Too-Many
TCGA.AA.3678	23	81492308	93796466	2796	0.0447	NEUTRAL	NA	17	"APOOL,CHM,CPXCR1,CYLC1,DACH2,FAM133A,HDX,KLHL4,NAP1L3,PABPC5,PCDH11X,POF1B,POU3F4,RPS6KA6,SATL1,TGIF2LX,ZNF711"
TCGA.F5.6465	23	81892788	154925044	17941	0.3746	NEUTRAL	NA	399	Too-Many
TCGA.AG.A01W.01A	23	83205890	96241328	154	0.3244	NEUTRAL	NA	17	"APOOL,CHM,CPXCR1,DACH2,DIAPH2,FAM133A,HDX,KLHL4,NAP1L3,PABPC5,PCDH11X,POF1B,RPA4,RPS6KA6,SATL1,TGIF2LX,ZNF711"
TCGA.AA.A00N.01A	23	83400428	83442766	6	-0.3813	NEUTRAL	NA	1	RPS6KA6
TCGA.AA.A010.01A	23	83616422	84310785	9	-0.418	NEUTRAL	NA	2	"APOOL,HDX"
TCGA.DM.A1DA	23	83718777	84440704	220	-0.302	NEUTRAL	NA	3	"APOOL,HDX,SATL1"
TCGA.AA.A010.01A	23	84322079	84362627	10	0.0224	NEUTRAL	NA	2	"APOOL,SATL1"
TCGA.AA.A024.01A	23	84358819	151092880	2049	-0.0076	NEUTRAL	NA	305	Too-Many
TCGA.F5.6811.01A	23	84405890	84501162	19	0.0859	NEUTRAL	NA	1	ZNF711
TCGA.AA.3930.01A	23	84502522	84570640	17	0.2177	NEUTRAL	NA	2	"POF1B,ZNF711"
TCGA.AG.3909.01A	23	84502522	84600844	19	-0.3625	NEUTRAL	NA	2	"POF1B,ZNF711"
TCGA.F5.6811.01A	23	84509303	148603667	2012	-0.3357	NEUTRAL	NA	283	Too-Many
TCGA.AA.3930.01A	23	84585906	96330125	87	-0.2538	NEUTRAL	NA	12	"CHM,CPXCR1,DACH2,DIAPH2,FAM133A,KLHL4,NAP1L3,PABPC5,PCDH11X,POF1B,RPA4,TGIF2LX"
TCGA.AG.3909.01A	23	84606318	85158586	11	0.182	NEUTRAL	NA	2	"CHM,POF1B"
TCGA.CK.6746	23	84946047	126484307	9772	0.0159	NEUTRAL	NA	182	Too-Many
TCGA.AG.3909.01A	23	85282432	99854507	87	-0.0373	NEUTRAL	NA	13	"CHM,CPXCR1,DACH2,DIAPH2,FAM133A,KLHL4,NAP1L3,PABPC5,PCDH11X,PCDH19,RPA4,TGIF2LX,TNMD"
TCGA.AG.A00C.01A	23	85282432	108867794	675	0.2983	NEUTRAL	NA	104	Too-Many
TCGA.CM.6171	23	85923401	154925044	16963	0.0326	NEUTRAL	NA	390	Too-Many
TCGA.AA.3977	23	86331861	154925044	16556	-0.1646	NEUTRAL	NA	389	Too-Many
TCGA.AA.3982	23	86455328	97285127	2399	-0.2337	NEUTRAL	NA	9	"CPXCR1,DIAPH2,FAM133A,KLHL4,NAP1L3,PABPC5,PCDH11X,RPA4,TGIF2LX"
TCGA.AF.3914.01A	23	86890580	152138935	2040	0.1551	NEUTRAL	NA	316	Too-Many
TCGA.AA.A010.01A	23	86921408	99605577	53	-0.1311	NEUTRAL	NA	10	"CPXCR1,DIAPH2,FAM133A,KLHL4,NAP1L3,PABPC5,PCDH11X,PCDH19,RPA4,TGIF2LX"
TCGA.CM.6170	23	87127556	93497501	1266	0.0048	NEUTRAL	NA	6	"CPXCR1,FAM133A,NAP1L3,PABPC5,PCDH11X,TGIF2LX"
TCGA.AZ.4614	23	87638236	111435352	4696	-0.0173	NEUTRAL	NA	113	Too-Many
TCGA.G4.6626	23	88419399	90280480	221	-0.09	NEUTRAL	NA	1	TGIF2LX
TCGA.NH.A50U	23	88435253	90173806	201	0.1611	NEUTRAL	NA	1	TGIF2LX
TCGA.5M.AAT4	23	88443281	88599251	26	-0.02	NEUTRAL	NA	0	None
TCGA.EI.6511	23	88444083	89200621	91	0.3058	NEUTRAL	NA	1	TGIF2LX
TCGA.4N.A93T	23	88468320	91427082	375	0.3119	NEUTRAL	NA	3	"PABPC5,PCDH11X,TGIF2LX"
TCGA.AA.3488	23	88491811	90288633	207	-0.03	NEUTRAL	NA	1	TGIF2LX
TCGA.D5.6931	23	88494864	88520898	6	-0.046	NEUTRAL	NA	0	None
TCGA.D5.6923	23	88494864	88583468	15	0.2474	NEUTRAL	NA	0	None
TCGA.AZ.6607	23	88499791	92392410	501	0.3324	NEUTRAL	NA	3	"PABPC5,PCDH11X,TGIF2LX"
TCGA.F5.6810	23	88542329	90482886	239	0.2586	NEUTRAL	NA	1	TGIF2LX
TCGA.5M.AAT4	23	88599310	90173773	167	0.2664	NEUTRAL	NA	1	TGIF2LX
TCGA.DM.A28C	23	89232331	89298638	15	-0.2322	NEUTRAL	NA	0	None
TCGA.AA.3494	23	89232331	89349346	32	0.3277	NEUTRAL	NA	0	None
TCGA.G5.6235	23	89232331	89349346	32	0.3057	NEUTRAL	NA	0	None
TCGA.DM.A28C	23	89342234	89349346	5	-0.3884	NEUTRAL	NA	0	None
TCGA.QL.A97D	23	89944833	93419578	632	0.1698	NEUTRAL	NA	4	"FAM133A,NAP1L3,PABPC5,PCDH11X"
TCGA.AA.3494	23	90052676	90144282	8	0.1295	NEUTRAL	NA	0	None
TCGA.5M.AAT4	23	90173806	90280480	14	-0.1568	NEUTRAL	NA	0	None
TCGA.G4.6626	23	90281494	90711047	120	0.2875	NEUTRAL	NA	1	PABPC5
TCGA.DM.A28C	23	90287714	90751925	124	0.1257	NEUTRAL	NA	1	PABPC5
TCGA.AA.3494	23	90287714	154925044	15775	0.355	NEUTRAL	NA	386	Too-Many
TCGA.AA.3495	23	90287714	154925044	15801	0.0857	NEUTRAL	NA	386	Too-Many
TCGA.D5.6536	23	90287714	154925044	15810	-0.0068	NEUTRAL	NA	386	Too-Many
TCGA.F5.6813	23	90288179	154925044	15779	0.1184	NEUTRAL	NA	386	Too-Many
TCGA.G5.6572	23	90321910	154925044	15693	0.1061	NEUTRAL	NA	386	Too-Many
TCGA.NH.A50U	23	90710335	92480841	226	0.2677	NEUTRAL	NA	1	PCDH11X
TCGA.AD.A5EK	23	90711047	91438853	70	0.3577	NEUTRAL	NA	1	PCDH11X
TCGA.G4.6626	23	90711994	91431002	61	-0.1237	NEUTRAL	NA	1	PCDH11X
TCGA.AA.3488	23	90711994	92258777	172	-0.0297	NEUTRAL	NA	1	PCDH11X
TCGA.F5.6810	23	90748416	91422001	51	0.2046	NEUTRAL	NA	1	PCDH11X
TCGA.EI.6511	23	90748416	91427082	54	0.2529	NEUTRAL	NA	1	PCDH11X
TCGA.D5.6924	23	90751925	91346185	42	0.2911	NEUTRAL	NA	1	PCDH11X
TCGA.AH.6897	23	90751925	91427082	52	0.1825	NEUTRAL	NA	1	PCDH11X
TCGA.AA.A02Y	23	90751925	91430328	54	0.3658	NEUTRAL	NA	1	PCDH11X
TCGA.5M.AAT4	23	90753246	91331401	37	0.1053	NEUTRAL	NA	1	PCDH11X
TCGA.G4.6294	23	90753246	91422001	49	0.2422	NEUTRAL	NA	1	PCDH11X
TCGA.4N.A93T	23	91430328	91464558	27	-0.2754	NEUTRAL	NA	1	PCDH11X
TCGA.D5.6529	23	91430328	154925044	15597	0.2347	NEUTRAL	NA	385	Too-Many
TCGA.G5.6641	23	91430328	154925044	15567	0.2219	NEUTRAL	NA	385	Too-Many
TCGA.G4.6626	23	91431106	91551620	64	0.2513	NEUTRAL	NA	1	PCDH11X
TCGA.DM.A28C	23	91434532	154925044	15576	-0.0097	NEUTRAL	NA	385	Too-Many
TCGA.DM.A28F	23	91551620	92383781	63	0.2866	NEUTRAL	NA	1	PCDH11X
TCGA.A6.6137	23	91556778	92358868	58	0.2187	NEUTRAL	NA	1	PCDH11X
TCGA.G4.6626	23	91556778	92420594	68	-0.1816	NEUTRAL	NA	1	PCDH11X
TCGA.AA.A02Y	23	91556891	92384990	63	0.3202	NEUTRAL	NA	1	PCDH11X
TCGA.G4.6294	23	91634362	92358868	49	0.2758	NEUTRAL	NA	1	PCDH11X
TCGA.5M.AAT4	23	91685123	92358344	45	0.185	NEUTRAL	NA	1	PCDH11X
TCGA.AH.6897	23	91685237	92358344	44	0.2259	NEUTRAL	NA	1	PCDH11X
TCGA.D5.6923	23	91685237	92358344	43	0.3631	NEUTRAL	NA	1	PCDH11X
TCGA.F5.6810	23	91738689	92096349	23	0.0444	NEUTRAL	NA	1	PCDH11X
TCGA.AA.3488	23	92266830	154925044	15379	0.3542	NEUTRAL	NA	384	Too-Many
TCGA.4N.A93T	23	92269426	154925044	15277	-0.0288	NEUTRAL	NA	384	Too-Many
TCGA.G4.6626	23	92421112	154925044	15532	0.276	NEUTRAL	NA	384	Too-Many
TCGA.DM.A1HA	23	92979341	154925044	15262	0.0505	NEUTRAL	NA	382	Too-Many
TCGA.QL.A97D	23	93431003	154925044	15305	0.1936	NEUTRAL	NA	382	Too-Many
TCGA.AA.3941	23	93448520	94492627	275	-0.3989	NEUTRAL	NA	0	None
TCGA.CM.6170	23	93502290	93530190	7	-0.3731	NEUTRAL	NA	0	None
TCGA.CM.6170	23	93530472	134039036	9357	0.0478	NEUTRAL	NA	209	Too-Many
TCGA.F4.6460	23	93544825	96121072	654	-0.2766	NEUTRAL	NA	1	DIAPH2
TCGA.AA.3678	23	93803284	154925044	15194	-0.5058	NEUTRAL	NA	382	Too-Many
TCGA.D5.6538	23	94387628	94415021	14	-0.085	NEUTRAL	NA	0	None
TCGA.D5.6538	23	94434603	154925044	15048	-0.0035	NEUTRAL	NA	382	Too-Many
TCGA.AA.3811	23	94568447	117289923	5063	-0.4616	NEUTRAL	NA	119	Too-Many
TCGA.3L.AA1B	23	94572255	97748674	773	0.1474	NEUTRAL	NA	2	"DIAPH2,RPA4"
TCGA.AA.3941	23	95166742	97285127	568	-0.1938	NEUTRAL	NA	2	"DIAPH2,RPA4"
TCGA.DM.A0X9	23	95305493	95419108	28	-0.0046	NEUTRAL	NA	0	None
TCGA.DM.A28G	23	96038286	154925044	14465	-0.1306	NEUTRAL	NA	382	Too-Many
TCGA.F4.6460	23	96122612	115015013	3905	0.1123	NEUTRAL	NA	115	Too-Many
TCGA.AG.A01W.01A	23	96256335	101513870	223	-0.1709	NEUTRAL	NA	34	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX6,BEX5,BTK,CENPI,CSTF2,DIAPH2,DRP2,GLA,HNRNPH2,NOX1,NXF2,NXF2B,NXF5,PCDH19,RPL36A,RPL36A-HNRNPH2,SRPX2,SYTL4,TAF7L,TCEAL2,TCEAL6,TCP11X2,TIMM8A,TMEM35,TNMD,TRMT2B,TSPAN6,XKRX,ZMAT1"
TCGA.AA.3950	23	96269775	97105239	206	-0.4094	NEUTRAL	NA	1	DIAPH2
TCGA.AA.3930.01A	23	96354691	107319277	481	0.0287	NEUTRAL	NA	86	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CLDN2,CSTF2,CXorf57,DIAPH2,DRP2,ESX1,FAM199X,FRMPD3,GLA,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,HNRNPH2,IL1RAPL2,MID2,MORC4,MORF4L2,MUM1L1,NGFRAP1,NOX1,NRK,NUP62CL,NXF2,NXF2B,NXF3,NXF5,PCDH19,PIH1D3,PLP1,PRPS1,RAB40A,RAB40AL,RAB9B,RBM41,RIPPLY1,RNF128,RPL36A,RPL36A-HNRNPH2,SERPINA7,SLC25A53,SRPX2,SYTL4,TAF7L,TBC1D8B,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TEX13A,TEX13B,TIMM8A,TMEM31,TMEM35,TMSB15A,TMSB15B,TNMD,TRMT2B,TSC22D3,TSPAN6,VSIG1,WBP5,XKRX,ZCCHC18,ZMAT1"
TCGA.AA.A017.01A	23	96369678	102968398	264	-0.1192	NEUTRAL	NA	57	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CSTF2,DIAPH2,DRP2,GLA,GLRA4,GPRASP1,GPRASP2,HNRNPH2,MORF4L2,NGFRAP1,NOX1,NXF2,NXF2B,NXF3,NXF5,PCDH19,RAB40A,RAB40AL,RPL36A,RPL36A-HNRNPH2,SRPX2,SYTL4,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TIMM8A,TMEM31,TMEM35,TMSB15A,TNMD,TRMT2B,TSPAN6,WBP5,XKRX,ZMAT1"
TCGA.AA.A02H.01A	23	96369678	102968398	263	-0.4934	NEUTRAL	NA	57	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CSTF2,DIAPH2,DRP2,GLA,GLRA4,GPRASP1,GPRASP2,HNRNPH2,MORF4L2,NGFRAP1,NOX1,NXF2,NXF2B,NXF3,NXF5,PCDH19,RAB40A,RAB40AL,RPL36A,RPL36A-HNRNPH2,SRPX2,SYTL4,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TIMM8A,TMEM31,TMEM35,TMSB15A,TNMD,TRMT2B,TSPAN6,WBP5,XKRX,ZMAT1"
TCGA.AG.A01J.01A	23	96502675	100242382	83	0.1841	NEUTRAL	NA	10	"ARL13A,CSTF2,DIAPH2,NOX1,PCDH19,SRPX2,SYTL4,TNMD,TSPAN6,XKRX"
TCGA.AZ.4684.01A	23	96603075	101439755	212	0.1875	NEUTRAL	NA	31	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX6,BEX5,BTK,CENPI,CSTF2,DIAPH2,DRP2,GLA,HNRNPH2,NOX1,NXF5,PCDH19,RPL36A,RPL36A-HNRNPH2,SRPX2,SYTL4,TAF7L,TCEAL2,TCEAL6,TIMM8A,TMEM35,TNMD,TRMT2B,TSPAN6,XKRX,ZMAT1"
TCGA.AA.3950	23	97107749	154925044	14372	-0.0091	NEUTRAL	NA	380	Too-Many
TCGA.DM.A28M.01A	23	99551266	101439755	208	0.1491	NEUTRAL	NA	30	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX6,BEX5,BTK,CENPI,CSTF2,DRP2,GLA,HNRNPH2,NOX1,NXF5,PCDH19,RPL36A,RPL36A-HNRNPH2,SRPX2,SYTL4,TAF7L,TCEAL2,TCEAL6,TIMM8A,TMEM35,TNMD,TRMT2B,TSPAN6,XKRX,ZMAT1"
TCGA.AA.3850	23	99599088	103770006	824	-0.17875	NEUTRAL	NA	65	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CSTF2,DRP2,ESX1,FAM199X,GLA,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,HNRNPH2,MORF4L2,NGFRAP1,NOX1,NXF2,NXF2B,NXF3,NXF5,PCDH19,PLP1,RAB40A,RAB40AL,RAB9B,RPL36A,RPL36A-HNRNPH2,SLC25A53,SRPX2,SYTL4,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TIMM8A,TMEM31,TMEM35,TMSB15A,TMSB15B,TNMD,TRMT2B,TSPAN6,WBP5,XKRX,ZCCHC18,ZMAT1"
TCGA.AA.3982	23	99625457	103738780	808	0.1984	NEUTRAL	NA	65	"ARL13A,ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,CSTF2,DRP2,ESX1,FAM199X,GLA,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,HNRNPH2,MORF4L2,NGFRAP1,NOX1,NXF2,NXF2B,NXF3,NXF5,PCDH19,PLP1,RAB40A,RAB40AL,RAB9B,RPL36A,RPL36A-HNRNPH2,SLC25A53,SRPX2,SYTL4,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TIMM8A,TMEM31,TMEM35,TMSB15A,TMSB15B,TNMD,TRMT2B,TSPAN6,WBP5,XKRX,ZCCHC18,ZMAT1"
TCGA.AA.3941	23	99626377	100087556	130	0.0057	NEUTRAL	NA	6	"CSTF2,PCDH19,SRPX2,SYTL4,TNMD,TSPAN6"
TCGA.AA.A00N.01A	23	99657515	99905724	20	-0.3139	NEUTRAL	NA	4	"PCDH19,SRPX2,TNMD,TSPAN6"
TCGA.AA.A010.01A	23	99839953	99930977	25	-0.1503	NEUTRAL	NA	4	"SRPX2,SYTL4,TNMD,TSPAN6"
TCGA.AG.3906.01A	23	99849211	99943266	29	0.0793	NEUTRAL	NA	4	"SRPX2,SYTL4,TNMD,TSPAN6"
TCGA.AG.3909.01A	23	99917136	100088117	33	0.3641	NEUTRAL	NA	3	"CSTF2,SRPX2,SYTL4"
TCGA.AA.A00D.01A	23	99919721	99936174	11	0.3747	NEUTRAL	NA	2	"SRPX2,SYTL4"
TCGA.AG.3906.01A	23	100075338	100118101	20	0.019	NEUTRAL	NA	2	"CSTF2,NOX1"
TCGA.AA.A010.01A	23	100075338	100183007	27	0.0587	NEUTRAL	NA	3	"CSTF2,NOX1,XKRX"
TCGA.AG.3909.01A	23	100092297	100177740	15	0.0505	NEUTRAL	NA	3	"CSTF2,NOX1,XKRX"
TCGA.DY.A1DF	23	100097487	154543124	13727	0.3613	NEUTRAL	NA	372	Too-Many
TCGA.AG.3891.01A	23	100228617	100417773	38	0.3202	NEUTRAL	NA	4	"ARL13A,CENPI,TMEM35,TRMT2B"
TCGA.AG.3909.01A	23	100240645	100417773	36	0.074	NEUTRAL	NA	4	"ARL13A,CENPI,TMEM35,TRMT2B"
TCGA.CK.5914.01A	23	100245496	100375319	20	0.3184	NEUTRAL	NA	4	"ARL13A,CENPI,TMEM35,TRMT2B"
TCGA.AG.A01J.01A	23	100275445	104650240	210	0.1635	NEUTRAL	NA	58	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,CENPI,DRP2,ESX1,FAM199X,GLA,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,HNRNPH2,IL1RAPL2,MORF4L2,NGFRAP1,NXF2,NXF2B,NXF3,NXF5,PLP1,RAB40A,RAB40AL,RAB9B,RPL36A,RPL36A-HNRNPH2,SLC25A53,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TEX13A,TIMM8A,TMEM31,TMEM35,TMSB15A,TMSB15B,TRMT2B,WBP5,ZCCHC18,ZMAT1"
TCGA.AA.A00N.01A	23	100290540	100297023	5	-0.3414	NEUTRAL	NA	1	TRMT2B
TCGA.AA.A010.01A	23	100297023	100357215	5	0.3279	NEUTRAL	NA	3	"CENPI,TMEM35,TRMT2B"
TCGA.AA.A010.01A	23	100364434	100524103	39	-0.4021	NEUTRAL	NA	3	"CENPI,DRP2,TAF7L"
TCGA.AG.3906.01A	23	100387152	100515439	29	0.1084	NEUTRAL	NA	2	"CENPI,DRP2"
TCGA.AG.3891.01A	23	100486598	100515439	22	-0.0662	NEUTRAL	NA	1	DRP2
TCGA.AA.3939.01A	23	100509811	100515439	6	0.1845	NEUTRAL	NA	1	DRP2
TCGA.AG.3909.01A	23	100524103	101624856	90	-0.1283	NEUTRAL	NA	20	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX6,BEX5,BTK,GLA,HNRNPH2,NXF2,NXF2B,NXF5,RPL36A,RPL36A-HNRNPH2,TAF7L,TCEAL2,TCEAL6,TCP11X2,TIMM8A,ZMAT1"
TCGA.AA.A00N.01A	23	100530143	100533914	6	-0.4496	NEUTRAL	NA	1	TAF7L
TCGA.CK.5914.01A	23	100530941	100609569	17	-0.2915	NEUTRAL	NA	3	"BTK,TAF7L,TIMM8A"
TCGA.AA.A00N.01A	23	100547751	100609569	7	-0.3608	NEUTRAL	NA	3	"BTK,TAF7L,TIMM8A"
TCGA.AG.3891.01A	23	100547751	103434238	141	-0.1027	NEUTRAL	NA	51	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,FAM199X,GLA,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,HNRNPH2,MORF4L2,NGFRAP1,NXF2,NXF2B,NXF3,NXF5,PLP1,RAB40A,RAB40AL,RAB9B,RPL36A,RPL36A-HNRNPH2,SLC25A53,TAF7L,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TIMM8A,TMEM31,TMSB15A,TMSB15B,WBP5,ZCCHC18,ZMAT1"
TCGA.AG.3906.01A	23	100601460	100630092	20	0.2871	NEUTRAL	NA	2	"BTK,TIMM8A"
TCGA.AA.A010.01A	23	100601460	101096201	51	0.0094	NEUTRAL	NA	12	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX6,BTK,GLA,HNRNPH2,NXF5,RPL36A,RPL36A-HNRNPH2,TIMM8A"
TCGA.CK.5914.01A	23	100610993	100662647	27	0.2174	NEUTRAL	NA	4	"BTK,GLA,RPL36A,RPL36A-HNRNPH2"
TCGA.AA.A00N.01A	23	100610993	101159145	51	0.3547	NEUTRAL	NA	12	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX6,BTK,GLA,HNRNPH2,NXF5,RPL36A,RPL36A-HNRNPH2,ZMAT1"
TCGA.AG.A016.01A	23	100630092	102884858	86	-0.5141	NEUTRAL	NA	38	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,BTK,GLA,GPRASP1,GPRASP2,HNRNPH2,NGFRAP1,NXF2,NXF2B,NXF3,NXF5,RAB40A,RAB40AL,RPL36A,RPL36A-HNRNPH2,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TMSB15A,WBP5,ZMAT1"
TCGA.AG.3906.01A	23	100645934	101581111	48	0.0454	NEUTRAL	NA	17	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX6,BEX5,GLA,HNRNPH2,NXF2,NXF2B,NXF5,RPL36A,RPL36A-HNRNPH2,TCEAL2,TCEAL6,TCP11X2,ZMAT1"
TCGA.AG.A01N.01A	23	100655610	102968398	81	-0.2947	NEUTRAL	NA	39	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX5,ARMCX5-GPRASP2,ARMCX6,BEX1,BEX2,BEX4,BEX5,BHLHB9,GLA,GLRA4,GPRASP1,GPRASP2,HNRNPH2,MORF4L2,NGFRAP1,NXF2,NXF2B,NXF3,NXF5,RAB40A,RAB40AL,RPL36A-HNRNPH2,TCEAL1,TCEAL2,TCEAL3,TCEAL4,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TMEM31,TMSB15A,WBP5,ZMAT1"
TCGA.CK.5914.01A	23	100666947	100910626	9	-0.2709	NEUTRAL	NA	7	"ARMCX1,ARMCX2,ARMCX3,ARMCX4,ARMCX6,HNRNPH2,RPL36A-HNRNPH2"
TCGA.AA.3941	23	100754923	101102434	96	-0.0624	NEUTRAL	NA	5	"ARMCX1,ARMCX2,ARMCX3,ARMCX6,NXF5"
TCGA.D5.6535	23	101090242	154925044	13524	-0.1929	NEUTRAL	NA	355	Too-Many
TCGA.AA.3941	23	101116896	102133813	152	-0.4259	NEUTRAL	NA	13	"ARMCX5,ARMCX5-GPRASP2,BEX5,BHLHB9,GPRASP1,GPRASP2,NXF2,NXF2B,TCEAL2,TCEAL6,TCP11X2,TMSB15A,ZMAT1"
TCGA.CK.5914.01A	23	101152830	101623682	15	0.1026	NEUTRAL	NA	7	"BEX5,NXF2,NXF2B,TCEAL2,TCEAL6,TCP11X2,ZMAT1"
TCGA.F4.6461	23	101365861	101938711	56	-0.4279	NEUTRAL	NA	10	"ARMCX5,ARMCX5-GPRASP2,BEX5,GPRASP1,NXF2,NXF2B,TCEAL2,TCEAL6,TCP11X2,TMSB15A"
TCGA.CK.4948.01B	23	101576679	101622992	8	-0.3397	NEUTRAL	NA	2	"NXF2,NXF2B"
TCGA.CM.4750.01A	23	101615448	153416081	2121	-3.00E-04	NEUTRAL	NA	308	Too-Many
TCGA.AZ.4684.01A	23	101622671	104478453	91	0.0789	NEUTRAL	NA	37	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,ESX1,FAM199X,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,IL1RAPL2,MORF4L2,NGFRAP1,NXF2,NXF2B,NXF3,PLP1,RAB40A,RAB40AL,RAB9B,SLC25A53,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TCP11X2,TEX13A,TMEM31,TMSB15A,TMSB15B,WBP5,ZCCHC18"
TCGA.CK.4948.01B	23	101623682	155254944	2398	0.0536	NEUTRAL	NA	352	Too-Many
TCGA.AA.A010.01A	23	101768947	103294497	66	-0.2711	NEUTRAL	NA	27	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,GLRA4,GPRASP1,GPRASP2,H2BFWT,MORF4L2,NGFRAP1,NXF3,PLP1,RAB40A,RAB40AL,RAB9B,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TMEM31,TMSB15A,TMSB15B,WBP5"
TCGA.AG.3906.01A	23	101768947	103434238	70	-0.0218	NEUTRAL	NA	31	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,FAM199X,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,MORF4L2,NGFRAP1,NXF3,PLP1,RAB40A,RAB40AL,RAB9B,SLC25A53,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TMEM31,TMSB15A,TMSB15B,WBP5,ZCCHC18"
TCGA.DM.A28M.01A	23	101769950	103358802	68	0.0455	NEUTRAL	NA	30	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,MORF4L2,NGFRAP1,NXF3,PLP1,RAB40A,RAB40AL,RAB9B,SLC25A53,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TMEM31,TMSB15A,TMSB15B,WBP5,ZCCHC18"
TCGA.F4.6461	23	101939062	126370728	5839	0.052	NEUTRAL	NA	135	Too-Many
TCGA.AG.A032.01A	23	101969820	155239443	2014	0.1708	NEUTRAL	NA	346	Too-Many
TCGA.AA.3941	23	102139617	103854338	327	0.0843	NEUTRAL	NA	27	"BEX1,BEX2,BEX4,ESX1,FAM199X,GLRA4,H2BFM,H2BFWT,IL1RAPL2,MORF4L2,NGFRAP1,NXF3,PLP1,RAB40A,RAB40AL,RAB9B,SLC25A53,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TMEM31,TMSB15B,WBP5,ZCCHC18"
TCGA.AG.A01W.01A	23	102217794	102226250	9	-0.3887	NEUTRAL	NA	0	None
TCGA.AG.A01W.01A	23	102234493	105037048	75	0.1628	NEUTRAL	NA	27	"BEX1,BEX2,BEX4,ESX1,FAM199X,GLRA4,H2BFM,H2BFWT,IL1RAPL2,MORF4L2,NGFRAP1,NXF3,PLP1,RAB40A,RAB9B,SLC25A53,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TEX13A,TMEM31,TMSB15B,WBP5,ZCCHC18"
TCGA.CL.4957	23	102583865	102857019	42	-0.2735	NEUTRAL	NA	5	"NGFRAP1,RAB40A,TCEAL4,TCEAL7,WBP5"
TCGA.AA.A02K.01A	23	102586323	102973969	13	0.0573	NEUTRAL	NA	10	"GLRA4,MORF4L2,NGFRAP1,RAB40A,TCEAL1,TCEAL3,TCEAL4,TCEAL7,TMEM31,WBP5"
TCGA.CK.5914.01A	23	102831330	102968398	13	-0.1482	NEUTRAL	NA	6	"GLRA4,MORF4L2,TCEAL1,TCEAL3,TCEAL4,TMEM31"
TCGA.AA.A00N.01A	23	102831330	103903535	48	0.0996	NEUTRAL	NA	16	"ESX1,FAM199X,GLRA4,H2BFM,H2BFWT,IL1RAPL2,MORF4L2,PLP1,RAB9B,SLC25A53,TCEAL1,TCEAL3,TCEAL4,TMEM31,TMSB15B,ZCCHC18"
TCGA.AG.A015.01A	23	102884858	103220029	21	0.1478	NEUTRAL	NA	7	"GLRA4,MORF4L2,PLP1,RAB9B,TCEAL1,TMEM31,TMSB15B"
TCGA.CL.4957	23	102890884	129202284	6438	0.3255	NEUTRAL	NA	128	Too-Many
TCGA.AG.A016.01A	23	102931057	140008259	1458	-0.168	NEUTRAL	NA	194	Too-Many
TCGA.AA.A02H.01A	23	102973937	107412673	231	-0.1014	NEUTRAL	NA	33	"ATG4A,CLDN2,COL4A6,CXorf57,ESX1,FAM199X,FRMPD3,GLRA4,H2BFM,H2BFWT,IL1RAPL2,MID2,MORC4,MUM1L1,NRK,NUP62CL,PIH1D3,PLP1,PRPS1,PSMD10,RAB9B,RBM41,RIPPLY1,RNF128,SERPINA7,SLC25A53,TBC1D8B,TEX13A,TEX13B,TMSB15B,TSC22D3,VSIG1,ZCCHC18"
TCGA.AG.A01N.01A	23	102973937	117043267	541	0.2039	NEUTRAL	NA	62	"ACSL4,AGTR2,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CT83,CXorf57,DCX,ESX1,FAM199X,FRMPD3,GLRA4,GUCY2F,H2BFM,H2BFWT,HTR2C,IL13RA2,IL1RAPL2,IRS4,KCNE5,KLHL13,LHFPL1,LRCH2,LUZP4,MID2,MORC4,MUM1L1,NRK,NUP62CL,NXT2,PAK3,PIH1D3,PLP1,PLS3,PRPS1,PSMD10,RAB9B,RBM41,RBMXL3,RGAG1,RIPPLY1,RNF128,SERPINA7,SLC25A53,SLC6A14,TBC1D8B,TEX13A,TEX13B,TMEM164,TMSB15B,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16,ZCCHC18"
TCGA.AA.A02K.01A	23	102977054	103044197	11	-0.2797	NEUTRAL	NA	2	"GLRA4,PLP1"
TCGA.AA.A02K.01A	23	103045393	146360694	1580	0.0771	NEUTRAL	NA	210	Too-Many
TCGA.CK.5914.01A	23	103080088	103499408	20	-0.142	NEUTRAL	NA	8	"ESX1,FAM199X,H2BFM,H2BFWT,RAB9B,SLC25A53,TMSB15B,ZCCHC18"
TCGA.AG.3611.01A	23	103080088	107814955	212	0.1502	NEUTRAL	NA	32	"ATG4A,CLDN2,COL4A5,COL4A6,CXorf57,ESX1,FAM199X,FRMPD3,H2BFM,H2BFWT,IL1RAPL2,MID2,MORC4,MUM1L1,NRK,NUP62CL,PIH1D3,PRPS1,PSMD10,RAB9B,RBM41,RIPPLY1,RNF128,SERPINA7,SLC25A53,TBC1D8B,TEX13A,TEX13B,TMSB15B,TSC22D3,VSIG1,ZCCHC18"
TCGA.AA.A017.01A	23	103219063	103411430	9	-0.4515	NEUTRAL	NA	6	"FAM199X,H2BFM,H2BFWT,SLC25A53,TMSB15B,ZCCHC18"
TCGA.AG.A015.01A	23	103267205	105161519	45	-0.1591	NEUTRAL	NA	9	"ESX1,FAM199X,H2BFM,H2BFWT,IL1RAPL2,NRK,SLC25A53,TEX13A,ZCCHC18"
TCGA.AA.A03F	23	103329312	154925044	13107	-0.0063	NEUTRAL	NA	319	Too-Many
TCGA.AA.A017.01A	23	103420282	107310159	180	0.319	NEUTRAL	NA	22	"CLDN2,CXorf57,ESX1,FAM199X,FRMPD3,IL1RAPL2,MID2,MORC4,MUM1L1,NRK,NUP62CL,PIH1D3,PRPS1,RBM41,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13A,TEX13B,TSC22D3,VSIG1"
TCGA.AG.3909.01A	23	103498807	106331634	118	0.0346	NEUTRAL	NA	13	"CLDN2,CXorf57,ESX1,IL1RAPL2,MORC4,MUM1L1,NRK,RBM41,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13A"
TCGA.AA.3982	23	103743250	117234931	3000	-0.2786	NEUTRAL	NA	52	"ACSL4,AGTR2,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CT83,CXorf57,DCX,FRMPD3,GUCY2F,HTR2C,IL13RA2,IL1RAPL2,IRS4,KCNE5,KLHL13,LHFPL1,LRCH2,LUZP4,MID2,MORC4,MUM1L1,NRK,NUP62CL,NXT2,PAK3,PIH1D3,PLS3,PRPS1,PSMD10,RBM41,RBMXL3,RGAG1,RIPPLY1,RNF128,SERPINA7,SLC6A14,TBC1D8B,TEX13A,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.AG.3906.01A	23	103903535	105570728	48	-0.0703	NEUTRAL	NA	5	"IL1RAPL2,MUM1L1,NRK,SERPINA7,TEX13A"
TCGA.AG.3891.01A	23	103903535	129040108	979	-0.0957	NEUTRAL	NA	114	Too-Many
TCGA.AA.3986	23	103969262	108607078	762	-0.1518	NEUTRAL	NA	25	"ATG4A,CLDN2,COL4A5,COL4A6,CXorf57,FRMPD3,IL1RAPL2,IRS4,MID2,MORC4,MUM1L1,NRK,NUP62CL,PIH1D3,PRPS1,PSMD10,RBM41,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13A,TEX13B,TSC22D3,VSIG1"
TCGA.AG.A008.01A	23	104650240	105066766	8	-0.3809	NEUTRAL	NA	2	"IL1RAPL2,NRK"
TCGA.AG.A008.01A	23	105075038	108887211	298	0.0379	NEUTRAL	NA	27	"ACSL4,ATG4A,CLDN2,COL4A5,COL4A6,CXorf57,FRMPD3,GUCY2F,IRS4,KCNE5,MID2,MORC4,MUM1L1,NRK,NUP62CL,NXT2,PIH1D3,PRPS1,PSMD10,RBM41,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13B,TSC22D3,VSIG1"
TCGA.AA.3967.01A	23	105150380	105199446	19	0.1295	NEUTRAL	NA	1	NRK
TCGA.AG.A015.01A	23	105165904	105449404	18	0.2006	NEUTRAL	NA	3	"MUM1L1,NRK,SERPINA7"
TCGA.AA.3941	23	105847035	117198847	2767	-0.0534	NEUTRAL	NA	47	"ACSL4,AGTR2,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CT83,CXorf57,DCX,FRMPD3,GUCY2F,HTR2C,IL13RA2,IRS4,KCNE5,KLHL13,LHFPL1,LRCH2,LUZP4,MID2,MORC4,NUP62CL,NXT2,PAK3,PIH1D3,PLS3,PRPS1,PSMD10,RBM41,RBMXL3,RGAG1,RIPPLY1,RNF128,SLC6A14,TBC1D8B,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.AA.3864	23	105847035	154925044	12406	-0.1452	NEUTRAL	NA	310	Too-Many
TCGA.AG.A015.01A	23	105875804	107415684	152	-0.0037	NEUTRAL	NA	18	"ATG4A,CLDN2,COL4A6,CXorf57,FRMPD3,MID2,MORC4,NUP62CL,PIH1D3,PRPS1,PSMD10,RBM41,RIPPLY1,RNF128,TBC1D8B,TEX13B,TSC22D3,VSIG1"
TCGA.AG.3906.01A	23	105891493	108902573	255	-1.00E-04	NEUTRAL	NA	24	"ACSL4,ATG4A,CLDN2,COL4A5,COL4A6,CXorf57,FRMPD3,GUCY2F,IRS4,KCNE5,MID2,MORC4,NUP62CL,NXT2,PIH1D3,PRPS1,PSMD10,RBM41,RIPPLY1,RNF128,TBC1D8B,TEX13B,TSC22D3,VSIG1"
TCGA.A6.3808.01A	23	105891493	114398190	407	0.2992	NEUTRAL	NA	40	"ACSL4,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CXorf57,DCX,FRMPD3,GUCY2F,HTR2C,IL13RA2,IRS4,KCNE5,LHFPL1,LRCH2,MID2,MORC4,NUP62CL,NXT2,PAK3,PIH1D3,PRPS1,PSMD10,RBM41,RGAG1,RIPPLY1,RNF128,TBC1D8B,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.AG.A01W.01A	23	106033020	107280002	87	0.1021	NEUTRAL	NA	13	"CLDN2,FRMPD3,MID2,MORC4,NUP62CL,PIH1D3,PRPS1,RBM41,RIPPLY1,RNF128,TBC1D8B,TEX13B,TSC22D3"
TCGA.CK.4947	23	106142315	154925044	12698	0.0706	NEUTRAL	NA	307	Too-Many
TCGA.AG.A025.01A	23	106146311	155254944	2022	-0.1056	NEUTRAL	NA	309	Too-Many
TCGA.AA.A00N.01A	23	106185119	106221281	9	0.3408	NEUTRAL	NA	1	MORC4
TCGA.AA.A00N.01A	23	106242847	106418251	17	0.1852	NEUTRAL	NA	3	"MORC4,NUP62CL,RBM41"
TCGA.AA.A010.01A	23	106308887	107018358	50	-0.2062	NEUTRAL	NA	6	"FRMPD3,NUP62CL,PIH1D3,PRPS1,RBM41,TSC22D3"
TCGA.CK.5914.01A	23	106356594	106397288	10	-0.4286	NEUTRAL	NA	2	"NUP62CL,RBM41"
TCGA.AG.3909.01A	23	106396374	106776659	14	-0.0492	NEUTRAL	NA	3	"FRMPD3,NUP62CL,PIH1D3"
TCGA.CK.5914.01A	23	106410842	106515863	9	0.1992	NEUTRAL	NA	2	"NUP62CL,PIH1D3"
TCGA.AA.A00L.01A	23	106515863	106845985	5	0.2501	NEUTRAL	NA	1	FRMPD3
TCGA.AA.A00N.01A	23	106840520	106893120	10	0.275	NEUTRAL	NA	2	"FRMPD3,PRPS1"
TCGA.AG.3909.01A	23	106840520	107169864	24	-0.2963	NEUTRAL	NA	4	"FRMPD3,MID2,PRPS1,TSC22D3"
TCGA.CK.5914.01A	23	106840520	107396809	51	0.3759	NEUTRAL	NA	8	"ATG4A,FRMPD3,MID2,PRPS1,PSMD10,TEX13B,TSC22D3,VSIG1"
TCGA.AA.A00N.01A	23	107018358	107169864	12	-0.0973	NEUTRAL	NA	2	"MID2,TSC22D3"
TCGA.CM.6165.01A	23	107147139	107169864	7	-0.3762	NEUTRAL	NA	1	MID2
TCGA.CM.6165.01A	23	107224298	155171558	2117	0.0712	NEUTRAL	NA	298	Too-Many
TCGA.AG.A01W.01A	23	107281646	107320251	27	-0.3149	NEUTRAL	NA	1	VSIG1
TCGA.AG.3909.01A	23	107315867	107396809	19	0.1275	NEUTRAL	NA	3	"ATG4A,PSMD10,VSIG1"
TCGA.AA.A017.01A	23	107315867	107434585	44	-0.0855	NEUTRAL	NA	4	"ATG4A,COL4A6,PSMD10,VSIG1"
TCGA.AA.A010.01A	23	107320230	107412673	26	0.2769	NEUTRAL	NA	4	"ATG4A,COL4A6,PSMD10,VSIG1"
TCGA.AG.A01W.01A	23	107321228	110350186	154	0.1376	NEUTRAL	NA	15	"ACSL4,AMMECR1,ATG4A,CHRDL1,COL4A5,COL4A6,GUCY2F,IRS4,KCNE5,NXT2,PAK3,PSMD10,RGAG1,TMEM164,VSIG1"
TCGA.AA.3930.01A	23	107369290	107626904	54	0.1309	NEUTRAL	NA	2	"ATG4A,COL4A6"
TCGA.AA.A02H.01A	23	107415684	110653954	181	-0.0112	NEUTRAL	NA	14	"ACSL4,AMMECR1,CAPN6,CHRDL1,COL4A5,COL4A6,DCX,GUCY2F,IRS4,KCNE5,NXT2,PAK3,RGAG1,TMEM164"
TCGA.AG.A015.01A	23	107417622	107424065	8	-0.4863	NEUTRAL	NA	1	COL4A6
TCGA.AG.A015.01A	23	107430288	110463529	155	-0.0588	NEUTRAL	NA	12	"ACSL4,AMMECR1,CHRDL1,COL4A5,COL4A6,GUCY2F,IRS4,KCNE5,NXT2,PAK3,RGAG1,TMEM164"
TCGA.AG.3909.01A	23	107436795	107939481	67	0.2196	NEUTRAL	NA	2	"COL4A5,COL4A6"
TCGA.CK.4952.01A	23	107569153	107822582	47	0.068	NEUTRAL	NA	2	"COL4A5,COL4A6"
TCGA.AA.A010.01A	23	107626565	107814955	11	-0.0824	NEUTRAL	NA	2	"COL4A5,COL4A6"
TCGA.AG.A014.01A	23	107681111	107807033	6	0.2137	NEUTRAL	NA	2	"COL4A5,COL4A6"
TCGA.AA.3930.01A	23	107681111	107864981	31	-0.447	NEUTRAL	NA	2	"COL4A5,COL4A6"
TCGA.AA.3815.01A	23	107811840	107865876	26	-0.3304	NEUTRAL	NA	1	COL4A5
TCGA.AG.3611.01A	23	107821500	125298475	532	0.201	NEUTRAL	NA	81	"ACSL4,AGTR2,AKAP14,ALG13,AMMECR1,AMOT,ATP1B4,C1GALT1C1,CAPN6,CHRDL1,COL4A5,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT83,CUL4B,CXorf56,DCAF12L2,DCX,DOCK11,GLUD2,GRIA3,GUCY2F,HTR2C,IL13RA1,IL13RA2,IRS4,KCNE5,KIAA1210,KLHL13,LAMP2,LHFPL1,LOC100129520,LONRF3,LRCH2,LUZP4,MCTS1,NDUFA1,NKAP,NKRF,NXT2,PAK3,PGRMC1,PLS3,RBMXL3,RGAG1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SH2D1A,SLC25A43,SLC25A5,SLC6A14,SOWAHD,STAG2,TENM1,THOC2,TMEM164,TMEM255A,TRPC5,TRPC5OS,UBE2A,UPF3B,WDR44,XIAP,ZBTB33,ZCCHC12,ZCCHC16"
TCGA.AG.A014.01A	23	107834256	107865876	14	0.2737	NEUTRAL	NA	1	COL4A5
TCGA.AA.3930.01A	23	107865876	107938006	18	-0.1471	NEUTRAL	NA	1	COL4A5
TCGA.AA.3815.01A	23	107867417	155245049	1983	0.0196	NEUTRAL	NA	294	Too-Many
TCGA.A6.6654	23	108563969	154925044	12212	-0.0211	NEUTRAL	NA	290	Too-Many
TCGA.AA.3973	23	108605558	108606066	3	-0.3191	NEUTRAL	NA	0	None
TCGA.AG.3909.01A	23	108619074	108780138	19	0.1688	NEUTRAL	NA	2	"GUCY2F,NXT2"
TCGA.AA.3930.01A	23	108619074	110035286	63	0.0368	NEUTRAL	NA	8	"ACSL4,AMMECR1,CHRDL1,GUCY2F,KCNE5,NXT2,RGAG1,TMEM164"
TCGA.AA.3973	23	108688420	108693647	5	-0.0464	NEUTRAL	NA	1	GUCY2F
TCGA.AA.3986	23	108698351	154925044	12023	-0.0985	NEUTRAL	NA	290	Too-Many
TCGA.AG.3598	23	108699433	154925044	11423	-0.2515	NEUTRAL	NA	290	Too-Many
TCGA.AA.A017.01A	23	108867794	108917566	9	-0.2399	NEUTRAL	NA	2	"ACSL4,KCNE5"
TCGA.AA.A01Q.01A	23	108902573	108924180	10	-0.4171	NEUTRAL	NA	1	ACSL4
TCGA.AG.A008.01A	23	108902573	108926368	12	0.3451	NEUTRAL	NA	1	ACSL4
TCGA.AA.A017.01A	23	108921167	110437479	44	0.3724	NEUTRAL	NA	6	"ACSL4,AMMECR1,CHRDL1,PAK3,RGAG1,TMEM164"
TCGA.AA.A01Q.01A	23	108925921	128876032	526	0.123	NEUTRAL	NA	83	"ACSL4,ACTRT1,AGTR2,AKAP14,ALG13,AMMECR1,AMOT,APLN,ATP1B4,C1GALT1C1,CAPN6,CHRDL1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT83,CUL4B,CXorf56,DCAF12L1,DCAF12L2,DCX,DOCK11,GLUD2,GRIA3,HTR2C,IL13RA1,IL13RA2,KIAA1210,KLHL13,LAMP2,LHFPL1,LOC100129520,LONRF3,LRCH2,LUZP4,MCTS1,NDUFA1,NKAP,NKRF,OCRL,PAK3,PGRMC1,PLS3,PRR32,RBMXL3,RGAG1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SH2D1A,SLC25A43,SLC25A5,SLC6A14,SMARCA1,SOWAHD,STAG2,TENM1,THOC2,TMEM164,TMEM255A,TRPC5,TRPC5OS,UBE2A,UPF3B,WDR44,XIAP,XPNPEP2,ZBTB33,ZCCHC12,ZCCHC16"
TCGA.AG.A008.01A	23	109246971	114399896	137	0.04	NEUTRAL	NA	16	"ALG13,AMMECR1,AMOT,CAPN6,CHRDL1,DCX,HTR2C,IL13RA2,LHFPL1,LRCH2,PAK3,RGAG1,TMEM164,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AG.3909.01A	23	109298538	114400765	139	0.0708	NEUTRAL	NA	16	"ALG13,AMMECR1,AMOT,CAPN6,CHRDL1,DCX,HTR2C,IL13RA2,LHFPL1,LRCH2,PAK3,RGAG1,TMEM164,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AG.A00C.01A	23	109298538	114404852	141	0.1825	NEUTRAL	NA	16	"ALG13,AMMECR1,AMOT,CAPN6,CHRDL1,DCX,HTR2C,IL13RA2,LHFPL1,LRCH2,PAK3,RGAG1,TMEM164,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AG.3906.01A	23	109441721	118709254	312	0.0495	NEUTRAL	NA	33	"AGTR2,ALG13,AMMECR1,AMOT,CAPN6,CHRDL1,CT83,CXorf56,DCX,DOCK11,HTR2C,IL13RA1,IL13RA2,KIAA1210,KLHL13,LHFPL1,LONRF3,LRCH2,LUZP4,PAK3,PGRMC1,PLS3,RBMXL3,RGAG1,SLC25A43,SLC25A5,SLC6A14,TRPC5,TRPC5OS,UBE2A,WDR44,ZCCHC12,ZCCHC16"
TCGA.AG.A01W.01A	23	110382175	114270905	98	0.1349	NEUTRAL	NA	11	"ALG13,AMOT,CAPN6,DCX,HTR2C,IL13RA2,LHFPL1,PAK3,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AA.3930.01A	23	110390918	110576231	27	0.1817	NEUTRAL	NA	3	"CAPN6,DCX,PAK3"
TCGA.AA.A017.01A	23	110439033	110491052	7	-0.3046	NEUTRAL	NA	2	"CAPN6,PAK3"
TCGA.AA.A00N.01A	23	110490545	110506950	10	-0.5042	NEUTRAL	NA	1	CAPN6
TCGA.AA.A017.01A	23	110494103	110544843	7	-0.3189	NEUTRAL	NA	2	"CAPN6,DCX"
TCGA.AG.A015.01A	23	110495518	135426509	908	-0.0681	NEUTRAL	NA	132	Too-Many
TCGA.A6.6650	23	110504281	117939599	1829	-0.1129	NEUTRAL	NA	21	"AGTR2,ALG13,AMOT,CAPN6,CT83,DCX,DOCK11,HTR2C,IL13RA1,IL13RA2,KLHL13,LHFPL1,LRCH2,LUZP4,PLS3,RBMXL3,SLC6A14,TRPC5,TRPC5OS,WDR44,ZCCHC16"
TCGA.AA.3930.01A	23	110644177	110966999	18	-0.1664	NEUTRAL	NA	2	"ALG13,DCX"
TCGA.AA.A017.01A	23	110653954	110965954	15	-0.1701	NEUTRAL	NA	2	"ALG13,DCX"
TCGA.AA.A00N.01A	23	110925313	110931078	3	-0.4983	NEUTRAL	NA	1	ALG13
TCGA.AA.A02H.01A	23	110931078	110961028	7	-0.2912	NEUTRAL	NA	1	ALG13
TCGA.AA.A02H.01A	23	110961299	114239713	49	0.3587	NEUTRAL	NA	8	"ALG13,AMOT,HTR2C,IL13RA2,LHFPL1,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AA.3930.01A	23	110979895	114844512	73	-0.1551	NEUTRAL	NA	12	"ALG13,AMOT,HTR2C,IL13RA2,LHFPL1,LRCH2,LUZP4,PLS3,RBMXL3,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AA.A017.01A	23	110995937	113965706	31	0.0636	NEUTRAL	NA	7	"ALG13,AMOT,HTR2C,LHFPL1,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AA.3710	23	111665193	121266907	2683	-0.3903	NEUTRAL	NA	57	"AGTR2,AKAP14,AMOT,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT83,CUL4B,CXorf56,DOCK11,GLUD2,HTR2C,IL13RA1,IL13RA2,KIAA1210,KLHL13,LAMP2,LHFPL1,LONRF3,LRCH2,LUZP4,MCTS1,NDUFA1,NKAP,NKRF,PGRMC1,PLS3,RBMXL3,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SLC6A14,SOWAHD,TMEM255A,UBE2A,UPF3B,WDR44,ZBTB33,ZCCHC12,ZCCHC16"
TCGA.DM.A285	23	112260315	154925044	11346	0.1078	NEUTRAL	NA	273	Too-Many
TCGA.DM.A1D9	23	112745850	113356965	176	-0.3288	NEUTRAL	NA	0	None
TCGA.DM.A1D9	23	113359513	154925044	11086	-0.0182	NEUTRAL	NA	273	Too-Many
TCGA.AA.3555	23	113414178	154925044	11091	0.0037	NEUTRAL	NA	273	Too-Many
TCGA.AD.6965	23	114326637	114426916	21	0.3351	NEUTRAL	NA	2	"LRCH2,RBMXL3"
TCGA.AA.A02H.01A	23	114347742	118377087	167	0.1559	NEUTRAL	NA	15	"AGTR2,CT83,DOCK11,IL13RA1,KIAA1210,KLHL13,LONRF3,LRCH2,LUZP4,PGRMC1,PLS3,RBMXL3,SLC6A14,WDR44,ZCCHC12"
TCGA.CK.5914.01A	23	114391096	114864097	20	-0.2029	NEUTRAL	NA	4	"LRCH2,LUZP4,PLS3,RBMXL3"
TCGA.AA.3967.01A	23	114398190	114400765	4	-0.4746	NEUTRAL	NA	1	LRCH2
TCGA.DM.A28M.01A	23	114404852	115568941	31	0.2329	NEUTRAL	NA	6	"AGTR2,LRCH2,LUZP4,PLS3,RBMXL3,SLC6A14"
TCGA.AZ.4684.01A	23	114418927	114953493	25	0.2607	NEUTRAL	NA	4	"LRCH2,LUZP4,PLS3,RBMXL3"
TCGA.AA.A017.01A	23	114418927	118676411	168	0.0547	NEUTRAL	NA	18	"AGTR2,CT83,CXorf56,DOCK11,IL13RA1,KIAA1210,KLHL13,LONRF3,LRCH2,LUZP4,PGRMC1,PLS3,RBMXL3,SLC25A43,SLC25A5,SLC6A14,WDR44,ZCCHC12"
TCGA.AA.A010.01A	23	114422762	117819630	119	-0.3327	NEUTRAL	NA	10	"AGTR2,CT83,DOCK11,KLHL13,LRCH2,LUZP4,PLS3,RBMXL3,SLC6A14,WDR44"
TCGA.AG.A008.01A	23	114468254	153588340	1452	0.1294	NEUTRAL	NA	233	Too-Many
TCGA.AG.A01W.01A	23	114750769	117809713	121	0.0154	NEUTRAL	NA	7	"AGTR2,CT83,DOCK11,KLHL13,PLS3,SLC6A14,WDR44"
TCGA.AG.3909.01A	23	114844512	117819630	109	0.1174	NEUTRAL	NA	7	"AGTR2,CT83,DOCK11,KLHL13,PLS3,SLC6A14,WDR44"
TCGA.AA.3930.01A	23	114856521	114953493	15	0.3369	NEUTRAL	NA	1	PLS3
TCGA.AG.A00C.01A	23	114856521	117819630	108	0.2318	NEUTRAL	NA	7	"AGTR2,CT83,DOCK11,KLHL13,PLS3,SLC6A14,WDR44"
TCGA.CK.5914.01A	23	114868291	115574784	19	0.3394	NEUTRAL	NA	3	"AGTR2,PLS3,SLC6A14"
TCGA.AA.3930.01A	23	115303486	117480419	26	-0.2744	NEUTRAL	NA	5	"AGTR2,CT83,KLHL13,SLC6A14,WDR44"
TCGA.A6.2685	23	115544416	154925044	10517	0.2148	NEUTRAL	NA	266	Too-Many
TCGA.AG.3885	23	115584373	144955838	7843	0.2841	NEUTRAL	NA	150	Too-Many
TCGA.DM.A28M.01A	23	115593879	138612876	896	0.2098	NEUTRAL	NA	125	Too-Many
TCGA.AZ.4614	23	116267286	117980706	551	-0.0348	NEUTRAL	NA	5	"DOCK11,IL13RA1,KLHL13,WDR44,ZCCHC12"
TCGA.EI.6508	23	116411702	154925044	10292	0.0057	NEUTRAL	NA	264	Too-Many
TCGA.AZ.4684.01A	23	117035749	119249353	190	0.0416	NEUTRAL	NA	24	"AKAP14,CXorf56,DOCK11,IL13RA1,KIAA1210,KLHL13,LONRF3,NDUFA1,NKAP,NKRF,PGRMC1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,UBE2A,UPF3B,WDR44,ZCCHC12"
TCGA.CK.5914.01A	23	117053442	117891971	77	0.2569	NEUTRAL	NA	4	"DOCK11,IL13RA1,KLHL13,WDR44"
TCGA.AG.A01N.01A	23	117053442	155239443	1591	-0.0509	NEUTRAL	NA	266	Too-Many
TCGA.AA.3850	23	117287824	119562717	598	0.32285	NEUTRAL	NA	27	"AKAP14,ATP1B4,CXorf56,DOCK11,IL13RA1,KIAA1210,LAMP2,LONRF3,NDUFA1,NKAP,NKRF,PGRMC1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,TMEM255A,UBE2A,UPF3B,WDR44,ZBTB33,ZCCHC12"
TCGA.AA.3811	23	117291402	119558831	609	0.0026	NEUTRAL	NA	26	"AKAP14,ATP1B4,CXorf56,DOCK11,IL13RA1,KIAA1210,LONRF3,NDUFA1,NKAP,NKRF,PGRMC1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,TMEM255A,UBE2A,UPF3B,WDR44,ZBTB33,ZCCHC12"
TCGA.AA.3930.01A	23	117512298	118699148	125	0.0323	NEUTRAL	NA	10	"CXorf56,DOCK11,IL13RA1,KIAA1210,LONRF3,PGRMC1,SLC25A43,SLC25A5,WDR44,ZCCHC12"
TCGA.AG.A01J.01A	23	117758455	155239443	1493	0.2133	NEUTRAL	NA	264	Too-Many
TCGA.AG.A01W.01A	23	117843236	118100980	15	-0.2955	NEUTRAL	NA	2	"IL13RA1,ZCCHC12"
TCGA.A6.3808.01A	23	117880870	122830530	232	-0.156	NEUTRAL	NA	44	"AKAP14,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,CXorf56,GLUD2,GRIA3,IL13RA1,KIAA1210,LAMP2,LONRF3,MCTS1,NDUFA1,NKAP,NKRF,PGRMC1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,THOC2,TMEM255A,UBE2A,UPF3B,ZBTB33,ZCCHC12"
TCGA.AA.A010.01A	23	117891971	118108696	10	-0.4261	NEUTRAL	NA	3	"IL13RA1,LONRF3,ZCCHC12"
TCGA.AG.A01W.01A	23	118103328	118600526	36	0.2105	NEUTRAL	NA	4	"KIAA1210,LONRF3,PGRMC1,SLC25A43"
TCGA.CK.5914.01A	23	118123324	118979114	76	0.0859	NEUTRAL	NA	12	"CXorf56,KIAA1210,LONRF3,NKRF,PGRMC1,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,UBE2A,UPF3B"
TCGA.AA.A010.01A	23	118140047	118242992	17	-0.4986	NEUTRAL	NA	2	"KIAA1210,LONRF3"
TCGA.AG.A00C.01A	23	118230418	118370369	9	0.1763	NEUTRAL	NA	2	"KIAA1210,PGRMC1"
TCGA.AA.A010.01A	23	118250412	118370369	5	0.0604	NEUTRAL	NA	2	"KIAA1210,PGRMC1"
TCGA.DC.6155	23	118342425	118344090	3	-0.5075	NEUTRAL	NA	0	None
TCGA.AA.A02H.01A	23	118513647	119438157	88	-0.4031	NEUTRAL	NA	18	"AKAP14,CXorf56,NDUFA1,NKAP,NKRF,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,TMEM255A,UBE2A,UPF3B,ZBTB33"
TCGA.AG.A01W.01A	23	118601072	118952496	42	-0.4341	NEUTRAL	NA	7	"CXorf56,NKRF,RPL39,SEPT6,SLC25A5,SOWAHD,UBE2A"
TCGA.AA.A00N.01A	23	118673625	118708610	8	0.0677	NEUTRAL	NA	2	"CXorf56,UBE2A"
TCGA.AA.A010.01A	23	118673625	118708610	8	-0.3765	NEUTRAL	NA	2	"CXorf56,UBE2A"
TCGA.AA.3930.01A	23	118708610	119059171	44	0.3552	NEUTRAL	NA	10	"AKAP14,NDUFA1,NKAP,NKRF,RNF113A,RPL39,SEPT6,SOWAHD,UBE2A,UPF3B"
TCGA.AG.3909.01A	23	118752657	118975643	22	0.2	NEUTRAL	NA	4	"RPL39,SEPT6,SOWAHD,UPF3B"
TCGA.AG.3906.01A	23	118763239	119065836	34	0.3716	NEUTRAL	NA	8	"AKAP14,NDUFA1,NKAP,RNF113A,RPL39,SEPT6,SOWAHD,UPF3B"
TCGA.AA.A00N.01A	23	118763239	119210810	44	0.0708	NEUTRAL	NA	10	"AKAP14,NDUFA1,NKAP,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SOWAHD,UPF3B"
TCGA.AA.A010.01A	23	118763239	128782548	297	-0.4285	NEUTRAL	NA	46	"ACTRT1,AKAP14,APLN,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,DCAF12L1,DCAF12L2,GLUD2,GRIA3,LAMP2,LOC100129520,MCTS1,NDUFA1,NKAP,OCRL,PRR32,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SH2D1A,SMARCA1,SOWAHD,STAG2,TENM1,THOC2,TMEM255A,UPF3B,XIAP,ZBTB33"
TCGA.AG.A00C.01A	23	118767274	118968789	13	0.2284	NEUTRAL	NA	4	"RPL39,SEPT6,SOWAHD,UPF3B"
TCGA.AG.A01W.01A	23	118954238	122460875	119	0.014	NEUTRAL	NA	30	"AKAP14,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,GLUD2,GRIA3,LAMP2,MCTS1,NDUFA1,NKAP,RHOXF1,RHOXF2,RHOXF2B,RNF113A,TMEM255A,UPF3B,ZBTB33"
TCGA.A6.6650	23	119004404	119601052	123	-0.129	NEUTRAL	NA	11	"AKAP14,ATP1B4,LAMP2,NDUFA1,NKAP,RHOXF1,RHOXF2,RHOXF2B,RNF113A,TMEM255A,ZBTB33"
TCGA.AA.3930.01A	23	119063949	129162578	318	0.002	NEUTRAL	NA	44	"ACTRT1,APLN,ATP1B4,BCORL1,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,DCAF12L1,DCAF12L2,GLUD2,GRIA3,LAMP2,LOC100129520,MCTS1,NKAP,OCRL,PRR32,RHOXF1,RHOXF2,RHOXF2B,SASH3,SH2D1A,SMARCA1,STAG2,TENM1,THOC2,TMEM255A,UTP14A,XIAP,XPNPEP2,ZBTB33,ZDHHC9"
TCGA.AG.3906.01A	23	119068467	128957615	288	0.0156	NEUTRAL	NA	42	"ACTRT1,APLN,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,DCAF12L1,DCAF12L2,GLUD2,GRIA3,LAMP2,LOC100129520,MCTS1,NKAP,OCRL,PRR32,RHOXF1,RHOXF2,RHOXF2B,SASH3,SH2D1A,SMARCA1,STAG2,TENM1,THOC2,TMEM255A,XIAP,XPNPEP2,ZBTB33,ZDHHC9"
TCGA.AA.3844	23	119149012	119259919	8	0.2912	NEUTRAL	NA	3	"RHOXF1,RHOXF2,RHOXF2B"
TCGA.AZ.4684.01A	23	119394695	138286159	690	0.3046	NEUTRAL	NA	99	"ACTRT1,ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,ATP1B4,BCORL1,BRS3,C1GALT1C1,CCDC160,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT55,CUL4B,DCAF12L1,DCAF12L2,DDX26B,ELF4,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FGF13,FHL1,FRMD7,GLUD2,GPC3,GPC4,GPR101,GPR119,GRIA3,HPRT1,HS6ST2,HTATSF1,IGSF1,LAMP2,LOC100129520,MAP7D3,MBNL3,MCTS1,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,PRR32,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SH2D1A,SLC25A14,SLC9A6,SMARCA1,SMIM10,STAG2,STK26,TENM1,TFDP3,THOC2,TMEM255A,USP26,UTP14A,VGLL1,XIAP,XPNPEP2,ZDHHC9,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.CK.5914.01A	23	119402050	122319635	66	0.226	NEUTRAL	NA	21	"ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,GLUD2,GRIA3,LAMP2,MCTS1,TMEM255A"
TCGA.AG.A00C.01A	23	119402050	128605133	193	0.2495	NEUTRAL	NA	32	"ACTRT1,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,DCAF12L1,DCAF12L2,GLUD2,GRIA3,LAMP2,LOC100129520,MCTS1,PRR32,SH2D1A,SMARCA1,STAG2,TENM1,THOC2,TMEM255A,XIAP"
TCGA.AG.3909.01A	23	119410702	119438157	8	0.0255	NEUTRAL	NA	1	TMEM255A
TCGA.AA.3844	23	119414504	119562782	49	0.2842	NEUTRAL	NA	3	"ATP1B4,LAMP2,TMEM255A"
TCGA.AA.A02H.01A	23	119495975	129173064	278	0.1896	NEUTRAL	NA	38	"ACTRT1,APLN,ATP1B4,BCORL1,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,DCAF12L1,DCAF12L2,GLUD2,GRIA3,LAMP2,LOC100129520,MCTS1,OCRL,PRR32,SASH3,SH2D1A,SMARCA1,STAG2,TENM1,THOC2,UTP14A,XIAP,XPNPEP2,ZDHHC9"
TCGA.AA.A017.01A	23	119495975	155239443	1331	0.0636	NEUTRAL	NA	240	Too-Many
TCGA.AG.3909.01A	23	119513280	119669635	17	-0.0382	NEUTRAL	NA	3	"ATP1B4,CUL4B,LAMP2"
TCGA.AA.3811	23	119562717	120395255	214	-0.3593	NEUTRAL	NA	18	"C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,GLUD2,LAMP2,MCTS1"
TCGA.AA.3850	23	119564880	119905925	96	0.13445	NEUTRAL	NA	4	"C1GALT1C1,CUL4B,LAMP2,MCTS1"
TCGA.AG.3909.01A	23	119670734	122319635	28	-0.3377	NEUTRAL	NA	18	"C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,GLUD2,GRIA3,MCTS1"
TCGA.AA.A00N.01A	23	119675405	120183852	24	-0.371	NEUTRAL	NA	17	"C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,GLUD2,MCTS1"
TCGA.AA.3982	23	119891262	121613015	468	-0.2919	NEUTRAL	NA	14	"CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,GLUD2"
TCGA.AA.3941	23	119914326	122718002	882	-0.2044	NEUTRAL	NA	15	"CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,GLUD2,GRIA3"
TCGA.AA.3844	23	119914326	128735198	2357	0.048	NEUTRAL	NA	27	"ACTRT1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,DCAF12L1,DCAF12L2,GLUD2,GRIA3,LOC100129520,OCRL,PRR32,SH2D1A,SMARCA1,STAG2,TENM1,THOC2,XIAP"
TCGA.AA.3949	23	120920492	154925044	8986	-0.0323	NEUTRAL	NA	219	Too-Many
TCGA.AG.3883	23	121138019	124901874	1040	0.377	NEUTRAL	NA	7	"GRIA3,LOC100129520,SH2D1A,STAG2,TENM1,THOC2,XIAP"
TCGA.AA.3710	23	121283514	154925044	8880	-0.018	NEUTRAL	NA	219	Too-Many
TCGA.AA.3982	23	121633507	127980768	1604	-0.3702	NEUTRAL	NA	11	"ACTRT1,DCAF12L1,DCAF12L2,GRIA3,LOC100129520,PRR32,SH2D1A,STAG2,TENM1,THOC2,XIAP"
TCGA.AF.2692	23	121854297	121950967	30	-0.0691	NEUTRAL	NA	0	None
TCGA.F5.6464	23	122369316	122373106	3	-0.3284	NEUTRAL	NA	1	GRIA3
TCGA.AG.3909.01A	23	122387106	122820351	43	0.1092	NEUTRAL	NA	2	"GRIA3,THOC2"
TCGA.AG.A01W.01A	23	122475710	122589196	19	0.3205	NEUTRAL	NA	1	GRIA3
TCGA.AA.3811	23	122493475	123614131	277	-0.135	NEUTRAL	NA	6	"GRIA3,SH2D1A,STAG2,TENM1,THOC2,XIAP"
TCGA.DM.A1D0	23	122509931	150193209	7369	-0.0703	NEUTRAL	NA	123	Too-Many
TCGA.AG.A01W.01A	23	122593173	122602012	7	-0.1618	NEUTRAL	NA	1	GRIA3
TCGA.AG.A01W.01A	23	122668354	122868472	9	-0.1953	NEUTRAL	NA	1	THOC2
TCGA.AA.3850	23	122729340	123621793	191	0.07605	NEUTRAL	NA	5	"SH2D1A,STAG2,TENM1,THOC2,XIAP"
TCGA.AF.2689	23	122810311	123038117	31	-0.2116	NEUTRAL	NA	2	"THOC2,XIAP"
TCGA.AF.2692	23	122812049	122989921	25	0.1237	NEUTRAL	NA	1	THOC2
TCGA.CK.5914.01A	23	122829821	122866741	7	0.1209	NEUTRAL	NA	1	THOC2
TCGA.AA.A00N.01A	23	122830530	123040809	11	0.0685	NEUTRAL	NA	2	"THOC2,XIAP"
TCGA.AG.3909.01A	23	122846668	128638649	93	0.0056	NEUTRAL	NA	11	"ACTRT1,DCAF12L1,DCAF12L2,LOC100129520,PRR32,SH2D1A,SMARCA1,STAG2,TENM1,THOC2,XIAP"
TCGA.AG.A01W.01A	23	122984102	128551763	117	0.2956	NEUTRAL	NA	9	"ACTRT1,DCAF12L1,DCAF12L2,LOC100129520,PRR32,SH2D1A,STAG2,TENM1,XIAP"
TCGA.F5.6810	23	122995716	123384923	90	0.2401	NEUTRAL	NA	2	"STAG2,XIAP"
TCGA.CK.5914.01A	23	123019476	123034316	5	-0.3712	NEUTRAL	NA	1	XIAP
TCGA.AF.2689	23	123039184	133944049	2395	0.2375	NEUTRAL	NA	43	"ACTRT1,AIFM1,APLN,ARHGAP36,BCORL1,CCDC160,DCAF12L1,DCAF12L2,ELF4,ENOX2,FAM122B,FAM122C,FRMD7,GPC3,GPC4,GPR119,HPRT1,HS6ST2,IGSF1,LOC100129520,MBNL3,OCRL,OR13H1,PHF6,PLAC1,PRR32,RAB33A,RAP2C,RBMX2,SASH3,SH2D1A,SLC25A14,SMARCA1,STAG2,STK26,TENM1,TFDP3,USP26,UTP14A,XIAP,XPNPEP2,ZDHHC9,ZNF280C"
TCGA.CK.5914.01A	23	123040809	123202389	21	0.214	NEUTRAL	NA	2	"STAG2,XIAP"
TCGA.EI.7004	23	123461344	125198580	396	0.2899	NEUTRAL	NA	3	"LOC100129520,SH2D1A,TENM1"
TCGA.AA.3941	23	123590005	128511414	1242	-0.3125	NEUTRAL	NA	6	"ACTRT1,DCAF12L1,DCAF12L2,LOC100129520,PRR32,TENM1"
TCGA.AA.3811	23	123656465	123849671	72	-0.1867	NEUTRAL	NA	1	TENM1
TCGA.CK.5914.01A	23	124097334	125953777	6	0.057	NEUTRAL	NA	5	"DCAF12L1,DCAF12L2,LOC100129520,PRR32,TENM1"
TCGA.5M.AAT5	23	124460132	154925044	7950	-0.038	NEUTRAL	NA	212	Too-Many
TCGA.AA.A022	23	124505128	154925044	7948	-0.1048	NEUTRAL	NA	212	Too-Many
TCGA.EI.7004	23	125200181	154925044	7809	-0.3368	NEUTRAL	NA	212	Too-Many
TCGA.AA.A00L.01A	23	125298475	125685563	4	-0.0967	NEUTRAL	NA	2	"DCAF12L1,DCAF12L2"
TCGA.AA.A00N.01A	23	125298475	125685563	4	-0.4251	NEUTRAL	NA	2	"DCAF12L1,DCAF12L2"
TCGA.AG.3611.01A	23	125299249	127185008	5	-0.2086	NEUTRAL	NA	4	"ACTRT1,DCAF12L1,DCAF12L2,PRR32"
TCGA.F4.6461	23	126371086	126493525	54	-0.4108	NEUTRAL	NA	0	None
TCGA.CK.6746	23	126493525	154925044	7447	0.0035	NEUTRAL	NA	209	Too-Many
TCGA.F4.6461	23	126507543	154925044	7447	0.0306	NEUTRAL	NA	209	Too-Many
TCGA.CA.5254	23	127241116	142011501	3625	-0.421	NEUTRAL	NA	84	"ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,ATP11C,BCORL1,BRS3,CCDC160,CD40LG,CDR1,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,CXorf66,DDX26B,ELF4,ENOX2,F9,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FGF13,FHL1,FRMD7,GPC3,GPC4,GPR101,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MAP7D3,MBNL3,MCF2,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SLC25A14,SLC9A6,SMARCA1,SMIM10,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,STK26,TFDP3,USP26,UTP14A,VGLL1,XPNPEP2,ZDHHC9,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.CA.6717	23	127248243	154925044	7121	-0.0434	NEUTRAL	NA	208	Too-Many
TCGA.G4.6294	23	127350071	127402035	7	-0.0166	NEUTRAL	NA	0	None
TCGA.EI.6509	23	128013160	154925044	7090	-0.001	NEUTRAL	NA	208	Too-Many
TCGA.AA.3982	23	128033350	128493158	160	-0.2351	NEUTRAL	NA	0	None
TCGA.AA.3811	23	128040092	136055294	1623	-0.189	NEUTRAL	NA	65	"ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,BCORL1,BRS3,CCDC160,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,ELF4,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,FRMD7,GPC3,GPC4,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,MAP7D3,MBNL3,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SLC25A14,SLC9A6,SMARCA1,SMIM10,STK26,TFDP3,USP26,UTP14A,VGLL1,XPNPEP2,ZDHHC9,ZNF280C,ZNF449,ZNF75D"
TCGA.AA.3982	23	128494500	136906446	1617	0.156	NEUTRAL	NA	67	"ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,BCORL1,BRS3,CCDC160,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,ELF4,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,FRMD7,GPC3,GPC4,GPR101,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,MAP7D3,MBNL3,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SLC25A14,SLC9A6,SMARCA1,SMIM10,STK26,TFDP3,USP26,UTP14A,VGLL1,XPNPEP2,ZDHHC9,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.AA.3850	23	128517319	137027603	1673	-0.11885	NEUTRAL	NA	67	"ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,BCORL1,BRS3,CCDC160,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,ELF4,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,FRMD7,GPC3,GPC4,GPR101,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,MAP7D3,MBNL3,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SLC25A14,SLC9A6,SMARCA1,SMIM10,STK26,TFDP3,USP26,UTP14A,VGLL1,XPNPEP2,ZDHHC9,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.AG.3611.01A	23	128582234	129042582	85	0.2235	NEUTRAL	NA	7	"APLN,OCRL,SASH3,SMARCA1,UTP14A,XPNPEP2,ZDHHC9"
TCGA.AG.A01W.01A	23	128610273	135401766	398	-0.0389	NEUTRAL	NA	59	"ADGRG4,AIFM1,APLN,ARHGAP36,BCORL1,CCDC160,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,ELF4,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,FRMD7,GPC3,GPC4,GPR119,HPRT1,HS6ST2,IGSF1,MAP7D3,MBNL3,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX2,SAGE1,SASH3,SLC25A14,SLC9A6,SMARCA1,SMIM10,STK26,TFDP3,USP26,UTP14A,XPNPEP2,ZDHHC9,ZNF280C,ZNF449,ZNF75D"
TCGA.CK.5914.01A	23	128630700	128710267	26	-0.1914	NEUTRAL	NA	2	"OCRL,SMARCA1"
TCGA.AA.A00N.01A	23	128694480	128889232	31	-0.0829	NEUTRAL	NA	3	"APLN,OCRL,XPNPEP2"
TCGA.AG.3909.01A	23	128709065	129063300	60	-0.1257	NEUTRAL	NA	6	"APLN,OCRL,SASH3,UTP14A,XPNPEP2,ZDHHC9"
TCGA.AA.A00Q.01A	23	128722109	128940325	35	0.2796	NEUTRAL	NA	5	"APLN,OCRL,SASH3,XPNPEP2,ZDHHC9"
TCGA.CK.5914.01A	23	128877887	128886097	8	-0.1621	NEUTRAL	NA	1	XPNPEP2
TCGA.AA.A010.01A	23	128877887	128922356	22	0.0677	NEUTRAL	NA	2	"SASH3,XPNPEP2"
TCGA.AA.A01Q.01A	23	128890398	129200655	51	-0.1254	NEUTRAL	NA	6	"BCORL1,ELF4,SASH3,UTP14A,XPNPEP2,ZDHHC9"
TCGA.CK.5914.01A	23	128894421	129063300	36	-0.0323	NEUTRAL	NA	4	"SASH3,UTP14A,XPNPEP2,ZDHHC9"
TCGA.AA.A00N.01A	23	128944828	130192290	108	-0.238	NEUTRAL	NA	12	"AIFM1,ARHGAP36,BCORL1,ELF4,ENOX2,GPR119,RAB33A,RBMX2,SLC25A14,UTP14A,ZDHHC9,ZNF280C"
TCGA.A6.3808.01A	23	128962906	129042582	6	-0.0659	NEUTRAL	NA	2	"UTP14A,ZDHHC9"
TCGA.AG.3611.01A	23	129063300	135862837	337	0.1397	NEUTRAL	NA	58	"ADGRG4,AIFM1,ARHGAP36,ARHGEF6,BCORL1,BRS3,CCDC160,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,ELF4,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,FRMD7,GPC3,GPC4,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,MAP7D3,MBNL3,MMGT1,MOSPD1,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX2,SAGE1,SLC25A14,SLC9A6,SMIM10,STK26,TFDP3,USP26,UTP14A,VGLL1,ZNF280C,ZNF449,ZNF75D"
TCGA.AG.3891.01A	23	129139150	149999647	623	-0.0719	NEUTRAL	NA	104	Too-Many
TCGA.A6.3808.01A	23	129173064	133087025	161	0.1075	NEUTRAL	NA	21	"AIFM1,ARHGAP36,BCORL1,ELF4,ENOX2,FRMD7,GPC3,GPC4,GPR119,HS6ST2,IGSF1,MBNL3,OR13H1,RAB33A,RAP2C,RBMX2,SLC25A14,STK26,TFDP3,USP26,ZNF280C"
TCGA.AG.3909.01A	23	129184630	129318207	28	-0.3406	NEUTRAL	NA	4	"AIFM1,BCORL1,ELF4,RAB33A"
TCGA.CK.5914.01A	23	129184630	129338858	30	0.0357	NEUTRAL	NA	5	"AIFM1,BCORL1,ELF4,RAB33A,ZNF280C"
TCGA.CL.4957	23	129232390	130071482	163	0.0771	NEUTRAL	NA	8	"AIFM1,ELF4,ENOX2,GPR119,RAB33A,RBMX2,SLC25A14,ZNF280C"
TCGA.AA.A01Q.01A	23	129263471	129269972	5	-0.3032	NEUTRAL	NA	1	AIFM1
TCGA.AA.A02H.01A	23	129263471	134715415	220	0.1488	NEUTRAL	NA	34	"AIFM1,ARHGAP36,CCDC160,CT55,DDX26B,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FRMD7,GPC3,GPC4,GPR119,HPRT1,HS6ST2,IGSF1,MBNL3,MOSPD1,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX2,SLC25A14,SMIM10,STK26,TFDP3,USP26,ZNF280C,ZNF449,ZNF75D"
TCGA.AA.A01Q.01A	23	129270566	149999647	571	0.0358	NEUTRAL	NA	102	Too-Many
TCGA.AA.A029.01A	23	129273707	155239443	964	-0.195	NEUTRAL	NA	201	Too-Many
TCGA.AA.A010.01A	23	129281437	131157566	84	-0.1554	NEUTRAL	NA	11	"AIFM1,ARHGAP36,ENOX2,GPR119,IGSF1,OR13H1,RAB33A,RBMX2,SLC25A14,STK26,ZNF280C"
TCGA.AG.3906.01A	23	129305996	135313714	263	0.0332	NEUTRAL	NA	48	"ARHGAP36,CCDC160,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,ENOX2,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,FRMD7,GPC3,GPC4,GPR119,HPRT1,HS6ST2,IGSF1,MAP7D3,MBNL3,MMGT1,MOSPD1,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX2,SAGE1,SLC25A14,SLC9A6,SMIM10,STK26,TFDP3,USP26,ZNF280C,ZNF449,ZNF75D"
TCGA.AA.3930.01A	23	129318207	140785574	447	0.0315	NEUTRAL	NA	71	"ADGRG4,ARHGAP36,ARHGEF6,ATP11C,BRS3,CCDC160,CD40LG,CDR1,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,CXorf66,DDX26B,ENOX2,F9,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FGF13,FHL1,FRMD7,GPC3,GPC4,GPR101,GPR119,HPRT1,HS6ST2,HTATSF1,IGSF1,LDOC1,LOC389895,MAP7D3,MBNL3,MCF2,MMGT1,MOSPD1,OR13H1,PHF6,PLAC1,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SLC25A14,SLC9A6,SMIM10,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,STK26,TFDP3,USP26,VGLL1,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.AG.3909.01A	23	129338858	129380783	14	0.0261	NEUTRAL	NA	1	ZNF280C
TCGA.CK.5914.01A	23	129380783	129498584	10	-0.2345	NEUTRAL	NA	2	"SLC25A14,ZNF280C"
TCGA.CK.5914.01A	23	129536212	129803912	15	-0.0743	NEUTRAL	NA	2	"ENOX2,RBMX2"
TCGA.AA.3941	23	129598926	131837078	432	0.1368	NEUTRAL	NA	9	"ARHGAP36,ENOX2,FRMD7,HS6ST2,IGSF1,MBNL3,OR13H1,RAP2C,STK26"
TCGA.AA.3844	23	129623603	130789310	221	0.1289	NEUTRAL	NA	4	"ARHGAP36,ENOX2,IGSF1,OR13H1"
TCGA.AG.A00C.01A	23	129629116	129843140	14	0.1678	NEUTRAL	NA	1	ENOX2
TCGA.AG.3909.01A	23	129799599	129843140	7	0.1983	NEUTRAL	NA	1	ENOX2
TCGA.CL.4957	23	130090507	131258351	280	-0.3424	NEUTRAL	NA	5	"ARHGAP36,FRMD7,IGSF1,OR13H1,STK26"
TCGA.CK.5914.01A	23	130192290	131157566	30	-0.2137	NEUTRAL	NA	4	"ARHGAP36,IGSF1,OR13H1,STK26"
TCGA.AG.A00C.01A	23	130222561	133087025	72	0.3122	NEUTRAL	NA	12	"ARHGAP36,FRMD7,GPC3,GPC4,HS6ST2,IGSF1,MBNL3,OR13H1,RAP2C,STK26,TFDP3,USP26"
TCGA.AG.A01L.01A	23	130407733	130410923	6	-0.4119	NEUTRAL	NA	1	IGSF1
TCGA.AG.3909.01A	23	130407733	133906142	97	-0.0912	NEUTRAL	NA	16	"CCDC160,FAM122B,FRMD7,GPC3,GPC4,HPRT1,HS6ST2,IGSF1,MBNL3,OR13H1,PHF6,PLAC1,RAP2C,STK26,TFDP3,USP26"
TCGA.AG.A01L.01A	23	130411831	148770548	466	0.1112	NEUTRAL	NA	88	"ADGRG4,AFF2,ARHGEF6,ATP11C,BRS3,CCDC160,CD40LG,CDR1,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,CXorf40A,CXorf51A,CXorf51B,CXorf66,DDX26B,F9,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FGF13,FHL1,FMR1,FMR1NB,FRMD7,GPC3,GPC4,GPR101,HPRT1,HS6ST2,HSFX1,HSFX2,HTATSF1,IDS,IGSF1,LDOC1,LOC389895,MAGEA11,MAGEA9,MAGEA9B,MAGEC1,MAGEC2,MAGEC3,MAP7D3,MBNL3,MCF2,MMGT1,MOSPD1,OR13H1,PHF6,PLAC1,RAP2C,RBMX,SAGE1,SLC9A6,SLITRK2,SLITRK4,SMIM10,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,STK26,TFDP3,TMEM185A,TMEM257,UBE2NL,USP26,VGLL1,ZIC3,ZNF449,ZNF75D"
TCGA.CL.4957	23	131263893	154925044	6348	0.2885	NEUTRAL	NA	187	Too-Many
TCGA.AA.3984	23	132157249	154925044	6194	0.3525	NEUTRAL	NA	184	Too-Many
TCGA.AA.A00N.01A	23	133303364	133633983	19	-0.0714	NEUTRAL	NA	3	"CCDC160,HPRT1,PHF6"
TCGA.CK.5914.01A	23	133303364	135404895	144	0.1511	NEUTRAL	NA	31	"ADGRG4,CCDC160,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,HPRT1,MAP7D3,MMGT1,MOSPD1,PHF6,PLAC1,SAGE1,SLC9A6,SMIM10,ZNF449,ZNF75D"
TCGA.G4.6309	23	133464862	154925044	5978	-0.0194	NEUTRAL	NA	179	Too-Many
TCGA.AF.2692	23	133923138	134115730	33	0.0481	NEUTRAL	NA	3	"FAM122B,FAM122C,MOSPD1"
TCGA.AF.2689	23	133976222	134132152	35	-0.2386	NEUTRAL	NA	3	"FAM122C,MOSPD1,SMIM10"
TCGA.AA.A010.01A	23	134030812	134494107	21	-0.2627	NEUTRAL	NA	8	"CT55,FAM127A,FAM127B,FAM127C,MOSPD1,SMIM10,ZNF449,ZNF75D"
TCGA.CM.6170	23	134053291	134132136	28	-0.4465	NEUTRAL	NA	1	SMIM10
TCGA.CM.6170	23	134132152	154925044	5898	-0.0221	NEUTRAL	NA	172	Too-Many
TCGA.AF.2689	23	134133138	154925044	5898	0.1978	NEUTRAL	NA	172	Too-Many
TCGA.AG.3909.01A	23	134292096	134994905	50	-0.0426	NEUTRAL	NA	15	"CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,SAGE1,ZNF449,ZNF75D"
TCGA.AG.A00C.01A	23	134654891	134994460	35	0.2608	NEUTRAL	NA	12	"CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,DDX26B,SAGE1"
TCGA.AA.A010.01A	23	134690041	135301555	60	-0.3298	NEUTRAL	NA	16	"CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,DDX26B,FHL1,MAP7D3,MMGT1,SAGE1,SLC9A6"
TCGA.A6.3808.01A	23	135067610	135862837	107	0.2203	NEUTRAL	NA	9	"ADGRG4,ARHGEF6,BRS3,CD40LG,FHL1,HTATSF1,MAP7D3,SLC9A6,VGLL1"
TCGA.AA.A00N.01A	23	135092592	135279225	12	0.2128	NEUTRAL	NA	2	"FHL1,SLC9A6"
TCGA.AG.3909.01A	23	135092592	135475615	50	0.1126	NEUTRAL	NA	4	"ADGRG4,FHL1,MAP7D3,SLC9A6"
TCGA.AA.A02H.01A	23	135092592	137790933	117	0.0639	NEUTRAL	NA	13	"ADGRG4,ARHGEF6,BRS3,CD40LG,FGF13,FHL1,GPR101,HTATSF1,MAP7D3,RBMX,SLC9A6,VGLL1,ZIC3"
TCGA.AG.A00C.01A	23	135106447	135301555	13	0.1007	NEUTRAL	NA	3	"FHL1,MAP7D3,SLC9A6"
TCGA.AA.A00N.01A	23	135292008	135313714	11	0.0577	NEUTRAL	NA	2	"FHL1,MAP7D3"
TCGA.AG.A00C.01A	23	135404895	135496271	23	0.2367	NEUTRAL	NA	1	ADGRG4
TCGA.AG.3906.01A	23	135404895	135498595	24	0.1373	NEUTRAL	NA	1	ADGRG4
TCGA.AG.A01W.01A	23	135418860	152684121	528	-9.00E-04	NEUTRAL	NA	83	"ADGRG4,AFF2,ARHGEF6,ATP11C,BRS3,CD40LG,CD99L2,CDR1,CETN2,CNGA2,CSAG1,CSAG3,CXorf40A,CXorf40B,CXorf51A,CXorf51B,CXorf66,F9,FATE1,FGF13,FMR1,FMR1NB,GABRA3,GABRE,GABRQ,GPR101,GPR50,HMGB3,HSFX1,HSFX2,HTATSF1,IDS,LDOC1,LOC389895,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA11,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MAGEA8,MAGEA9,MAGEA9B,MAGEC1,MAGEC2,MAGEC3,MAMLD1,MCF2,MTM1,MTMR1,NSDHL,PASD1,PNMA3,PNMA5,PNMA6A,PRRG3,RBMX,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM185A,TMEM257,UBE2NL,VGLL1,VMA21,ZFP92,ZIC3,ZNF185,ZNF275"
TCGA.AG.A015.01A	23	135428109	135439793	6	0.2843	NEUTRAL	NA	1	ADGRG4
TCGA.AG.A015.01A	23	135441434	135630711	31	-0.1251	NEUTRAL	NA	4	"ADGRG4,BRS3,HTATSF1,VGLL1"
TCGA.AG.3909.01A	23	135477502	135593660	21	-0.3286	NEUTRAL	NA	3	"ADGRG4,BRS3,HTATSF1"
TCGA.AA.A010.01A	23	135479993	135498595	7	-0.2094	NEUTRAL	NA	1	ADGRG4
TCGA.CK.5914.01A	23	135479993	135498595	7	-0.0415	NEUTRAL	NA	1	ADGRG4
TCGA.AG.3906.01A	23	135591193	149999647	287	0.0342	NEUTRAL	NA	51	"AFF2,ARHGEF6,ATP11C,CD40LG,CD99L2,CDR1,CXorf40A,CXorf40B,CXorf51A,CXorf51B,CXorf66,F9,FGF13,FMR1,FMR1NB,GPR101,HSFX1,HSFX2,HTATSF1,IDS,LDOC1,LOC389895,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,MAGEC1,MAGEC2,MAGEC3,MAMLD1,MCF2,MTM1,MTMR1,RBMX,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM185A,TMEM257,UBE2NL,VGLL1,ZIC3"
TCGA.AA.3844	23	135602976	135752807	55	0.1096	NEUTRAL	NA	3	"ARHGEF6,CD40LG,VGLL1"
TCGA.AG.3909.01A	23	135618153	135825697	27	0.2376	NEUTRAL	NA	3	"ARHGEF6,CD40LG,VGLL1"
TCGA.AA.A010.01A	23	135618153	135961428	38	-0.2643	NEUTRAL	NA	4	"ARHGEF6,CD40LG,RBMX,VGLL1"
TCGA.CK.5914.01A	23	135618153	136648819	40	0.2274	NEUTRAL	NA	6	"ARHGEF6,CD40LG,GPR101,RBMX,VGLL1,ZIC3"
TCGA.AG.A00C.01A	23	135630711	148564275	216	0.2432	NEUTRAL	NA	37	"AFF2,ARHGEF6,ATP11C,CD40LG,CDR1,CXorf51A,CXorf51B,CXorf66,F9,FGF13,FMR1,FMR1NB,GPR101,IDS,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,RBMX,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL,VGLL1,ZIC3"
TCGA.AG.A015.01A	23	135632863	135738446	6	0.2941	NEUTRAL	NA	2	"CD40LG,VGLL1"
TCGA.AG.A015.01A	23	135741207	138680510	60	-0.1981	NEUTRAL	NA	8	"ARHGEF6,CD40LG,F9,FGF13,GPR101,MCF2,RBMX,ZIC3"
TCGA.AA.A00N.01A	23	135825697	136648819	14	-0.0899	NEUTRAL	NA	4	"ARHGEF6,GPR101,RBMX,ZIC3"
TCGA.AG.3909.01A	23	135827343	135862837	4	-0.425	NEUTRAL	NA	1	ARHGEF6
TCGA.AG.3909.01A	23	135956311	135961428	6	0.2178	NEUTRAL	NA	1	RBMX
TCGA.AA.3811	23	136073948	148287312	3965	-0.4885	NEUTRAL	NA	32	"AFF2,ATP11C,CDR1,CXorf51A,CXorf51B,CXorf66,F9,FGF13,FMR1,FMR1NB,GPR101,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL,ZIC3"
TCGA.AG.3611.01A	23	136112255	153944252	557	0.0987	NEUTRAL	NA	124	Too-Many
TCGA.AA.3844	23	136123307	140475912	1274	0.1816	NEUTRAL	NA	11	"ATP11C,CDR1,CXorf66,F9,FGF13,LDOC1,LOC389895,MCF2,SOX3,SPANXB1,ZIC3"
TCGA.AA.3941	23	136154093	136456369	98	0.0167	NEUTRAL	NA	0	None
TCGA.AA.3941	23	136867014	142445687	1786	-0.0468	NEUTRAL	NA	18	"ATP11C,CDR1,CXorf66,F9,FGF13,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN4"
TCGA.AA.3982	23	136909945	148293803	3676	-0.2149	NEUTRAL	NA	30	"AFF2,ATP11C,CDR1,CXorf51A,CXorf51B,CXorf66,F9,FGF13,FMR1,FMR1NB,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.CK.5914.01A	23	137714994	138643633	18	0.3593	NEUTRAL	NA	2	"F9,FGF13"
TCGA.AG.3909.01A	23	137714994	142605093	105	0.0468	NEUTRAL	NA	19	"ATP11C,CDR1,CXorf66,F9,FGF13,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN3,SPANXN4"
TCGA.AG.A015.01A	23	138684513	138908811	47	0.0805	NEUTRAL	NA	2	"ATP11C,MCF2"
TCGA.CK.5914.01A	23	138727686	138774047	4	0.3291	NEUTRAL	NA	1	MCF2
TCGA.A6.3808.01A	23	138823098	148582434	139	-0.4556	NEUTRAL	NA	28	"AFF2,ATP11C,CDR1,CXorf51A,CXorf51B,CXorf66,FMR1,FMR1NB,IDS,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.AZ.4684.01A	23	138823098	154115603	750	0.1626	NEUTRAL	NA	129	Too-Many
TCGA.DM.A28M.01A	23	138839907	155254944	840	0.1664	NEUTRAL	NA	140	Too-Many
TCGA.AA.A010.01A	23	138850399	138871434	8	-0.1666	NEUTRAL	NA	1	ATP11C
TCGA.CK.5914.01A	23	138850399	149999647	201	0.3401	NEUTRAL	NA	41	"AFF2,ATP11C,CD99L2,CDR1,CXorf40A,CXorf40B,CXorf51A,CXorf51B,CXorf66,FMR1,FMR1NB,HSFX1,HSFX2,IDS,LDOC1,LOC389895,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,MAGEC1,MAGEC2,MAGEC3,MAMLD1,MTM1,MTMR1,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM185A,TMEM257,UBE2NL"
TCGA.AA.A010.01A	23	138896990	138914229	5	-0.0714	NEUTRAL	NA	1	ATP11C
TCGA.AA.3680	23	139100550	148562620	3159	-0.3036	NEUTRAL	NA	26	"AFF2,CDR1,CXorf51A,CXorf51B,FMR1,FMR1NB,IDS,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.AA.A010.01A	23	139791865	146366121	58	-0.5053	NEUTRAL	NA	20	"CDR1,CXorf51A,CXorf51B,LDOC1,MAGEC1,MAGEC2,MAGEC3,SLITRK2,SLITRK4,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.AG.A015.01A	23	139865705	153200698	386	-0.0456	NEUTRAL	NA	86	"ABCD1,AFF2,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,CD99L2,CDR1,CETN2,CNGA2,CSAG1,CSAG3,CXorf40A,CXorf40B,CXorf51A,CXorf51B,DUSP9,FAM58A,FATE1,FMR1,FMR1NB,GABRA3,GABRE,GABRQ,GPR50,HAUS7,HMGB3,HSFX1,HSFX2,IDH3G,IDS,L1CAM,LDOC1,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA11,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MAGEA8,MAGEA9,MAGEA9B,MAGEC1,MAGEC2,MAGEC3,MAMLD1,MTM1,MTMR1,NAA10,NSDHL,PASD1,PDZD4,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,PRRG3,SLC6A8,SLITRK2,SLITRK4,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,SRPK3,SSR4,TMEM185A,TMEM257,TREX2,UBE2NL,VMA21,ZFP92,ZNF185,ZNF275"
TCGA.AA.3844	23	140490209	141086164	148	0.1507	NEUTRAL	NA	6	"MAGEC1,MAGEC3,SPANXA1,SPANXA2,SPANXC,SPANXD"
TCGA.AA.3930.01A	23	140786440	145076242	32	-0.4179	NEUTRAL	NA	13	"MAGEC1,MAGEC2,MAGEC3,SLITRK2,SLITRK4,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.A6.6648	23	140869943	141144439	117	-0.3207	NEUTRAL	NA	2	"MAGEC1,MAGEC3"
TCGA.AG.A016.01A	23	140966910	146363406	43	-0.3194	NEUTRAL	NA	13	"CXorf51A,CXorf51B,MAGEC1,MAGEC2,MAGEC3,SLITRK2,SLITRK4,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.EI.6511	23	141061852	143156777	815	0.0181	NEUTRAL	NA	6	"MAGEC2,SLITRK4,SPANXN2,SPANXN3,SPANXN4,UBE2NL"
TCGA.AA.3844	23	141092185	141713740	308	0.1534	NEUTRAL	NA	1	MAGEC2
TCGA.A6.6648	23	141148621	154925044	3973	0.2527	NEUTRAL	NA	125	Too-Many
TCGA.A6.2686	23	141230865	154925044	3954	0.2684	NEUTRAL	NA	125	Too-Many
TCGA.AA.3844	23	141735461	148293803	2216	0.0948	NEUTRAL	NA	13	"AFF2,CXorf51A,CXorf51B,FMR1,FMR1NB,SLITRK2,SLITRK4,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.A6.2681	23	142095573	143497120	460	0.1206	NEUTRAL	NA	5	"SLITRK4,SPANXN2,SPANXN3,SPANXN4,UBE2NL"
TCGA.AA.3941	23	142474028	148486761	2027	-0.0772	NEUTRAL	NA	12	"AFF2,CXorf51A,CXorf51B,FMR1,FMR1NB,SLITRK2,SLITRK4,SPANXN1,SPANXN2,SPANXN3,TMEM257,UBE2NL"
TCGA.AA.A02H.01A	23	142605093	155239443	598	0.0088	NEUTRAL	NA	125	Too-Many
TCGA.CA.5254	23	142739950	148612450	1979	-0.4092	NEUTRAL	NA	11	"AFF2,CXorf51A,CXorf51B,FMR1,FMR1NB,IDS,SLITRK2,SPANXN1,SPANXN2,TMEM257,UBE2NL"
TCGA.G4.6311	23	143496869	144572348	339	-0.0313	NEUTRAL	NA	1	SPANXN1
TCGA.EI.6513	23	143574248	150672543	2292	-0.0324	NEUTRAL	NA	25	"AFF2,CD99L2,CXorf40A,CXorf40B,CXorf51A,CXorf51B,FMR1,FMR1NB,GPR50,HMGB3,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MTM1,MTMR1,SLITRK2,SPANXN1,TMEM185A,TMEM257,VMA21"
TCGA.A6.5666	23	144317481	144850530	182	-0.1372	NEUTRAL	NA	1	SPANXN1
TCGA.AA.3967.01A	23	145075731	146366121	19	0.0062	NEUTRAL	NA	2	"CXorf51A,CXorf51B"
TCGA.AG.3909.01A	23	145075731	146366121	19	0.1911	NEUTRAL	NA	2	"CXorf51A,CXorf51B"
TCGA.AA.3930.01A	23	145078128	154774710	667	-0.0056	NEUTRAL	NA	115	Too-Many
TCGA.AA.3968	23	145605892	154925044	2388	0.2463	NEUTRAL	NA	116	Too-Many
TCGA.AG.3883	23	146179984	146711243	186	0.3126	NEUTRAL	NA	0	None
TCGA.EI.6506	23	146187914	154925044	2179	-0.0138	NEUTRAL	NA	114	Too-Many
TCGA.AA.A02K.01A	23	146993626	155171505	693	0.0165	NEUTRAL	NA	115	Too-Many
TCGA.AG.3909.01A	23	147003376	147090088	18	-0.3758	NEUTRAL	NA	2	"FMR1,FMR1NB"
TCGA.AA.A00N.01A	23	147017971	147030155	8	0.0817	NEUTRAL	NA	1	FMR1
TCGA.AG.A016.01A	23	147030155	151808797	158	-0.1695	NEUTRAL	NA	31	"AFF2,CD99L2,CNGA2,CXorf40A,CXorf40B,FATE1,FMR1,FMR1NB,GABRA3,GABRE,GABRQ,GPR50,HMGB3,HSFX1,HSFX2,IDS,MAGEA10,MAGEA10-MAGEA5,MAGEA11,MAGEA4,MAGEA5,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MTM1,MTMR1,PASD1,PRRG3,TMEM185A,VMA21"
TCGA.AG.3909.01A	23	147106338	148072690	23	0.2108	NEUTRAL	NA	2	"AFF2,FMR1NB"
TCGA.AA.3811	23	148289312	154925044	1523	-0.122	NEUTRAL	NA	111	Too-Many
TCGA.AA.3982	23	148294166	151733596	987	0.1799	NEUTRAL	NA	27	"CD99L2,CNGA2,CXorf40A,CXorf40B,FATE1,GABRA3,GABRE,GPR50,HMGB3,HSFX1,HSFX2,IDS,MAGEA10,MAGEA10-MAGEA5,MAGEA11,MAGEA4,MAGEA5,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MTM1,MTMR1,PASD1,PRRG3,TMEM185A,VMA21"
TCGA.AA.3850	23	148538046	149139870	84	0.20415	NEUTRAL	NA	10	"CXorf40A,CXorf40B,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,TMEM185A"
TCGA.AA.3680	23	148565757	154925044	1434	0.0143	NEUTRAL	NA	111	Too-Many
TCGA.CA.5254	23	148689033	148797347	17	-0.3994	NEUTRAL	NA	2	"MAGEA11,TMEM185A"
TCGA.F5.6811.01A	23	148773654	154427904	662	-0.3257	NEUTRAL	NA	104	Too-Many
TCGA.AG.A01L.01A	23	149100712	155130128	477	0.1886	NEUTRAL	NA	103	Too-Many
TCGA.AG.A00C.01A	23	149101793	149999647	45	0.3037	NEUTRAL	NA	5	"CD99L2,CXorf40B,MAMLD1,MTM1,MTMR1"
TCGA.AA.A00N.01A	23	149101793	150066929	49	0.1993	NEUTRAL	NA	5	"CD99L2,CXorf40B,MAMLD1,MTM1,MTMR1"
TCGA.AG.3909.01A	23	149101793	150156200	49	0.0162	NEUTRAL	NA	6	"CD99L2,CXorf40B,HMGB3,MAMLD1,MTM1,MTMR1"
TCGA.CA.5254	23	149101990	154925044	1359	-0.4531	NEUTRAL	NA	102	Too-Many
TCGA.AA.3941	23	149123977	149295689	37	-0.079	NEUTRAL	NA	0	None
TCGA.AA.3850	23	149234352	151215837	700	0.00685	NEUTRAL	NA	13	"CD99L2,CNGA2,FATE1,GABRE,GPR50,HMGB3,MAGEA4,MAMLD1,MTM1,MTMR1,PASD1,PRRG3,VMA21"
TCGA.AG.3885	23	149499529	149517396	8	-0.0483	NEUTRAL	NA	0	None
TCGA.AA.3693	23	149518973	154925044	1272	-0.0607	NEUTRAL	NA	101	Too-Many
TCGA.AG.3612	23	149518973	154925044	1270	-0.1248	NEUTRAL	NA	101	Too-Many
TCGA.A6.3808.01A	23	149613733	151820997	124	-0.0353	NEUTRAL	NA	18	"CD99L2,CNGA2,FATE1,GABRA3,GABRE,GABRQ,GPR50,HMGB3,MAGEA10,MAGEA10-MAGEA5,MAGEA4,MAGEA5,MAMLD1,MTM1,MTMR1,PASD1,PRRG3,VMA21"
TCGA.AA.A010.01A	23	149905703	149924123	5	-0.4399	NEUTRAL	NA	1	MTMR1
TCGA.DM.A1D0	23	150194294	154925044	1055	-0.0655	NEUTRAL	NA	96	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CETN2,CLIC2,CMC4,CNGA2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FATE1,FLNA,FUNDC2,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,GPR50,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MECP2,MPP1,MTCP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PASD1,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,PRRG3,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,VMA21,ZFP92,ZNF185,ZNF275"
TCGA.AA.A01Q.01A	23	150345156	150844422	20	-0.028	NEUTRAL	NA	3	"GPR50,PASD1,VMA21"
TCGA.AG.3906.01A	23	150345156	150844422	20	0.1065	NEUTRAL	NA	3	"GPR50,PASD1,VMA21"
TCGA.AG.3891.01A	23	150345156	153095627	209	-0.0295	NEUTRAL	NA	44	"ABCD1,ATP2B3,BCAP31,BGN,CETN2,CNGA2,CSAG1,CSAG3,DUSP9,FAM58A,FATE1,GABRA3,GABRE,GABRQ,GPR50,HAUS7,IDH3G,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,NSDHL,PASD1,PDZD4,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,PRRG3,SLC6A8,SRPK3,SSR4,TREX2,VMA21,ZFP92,ZNF185,ZNF275"
TCGA.AG.A00C.01A	23	150780083	151935783	68	0.2745	NEUTRAL	NA	18	"CNGA2,CSAG1,CSAG3,FATE1,GABRA3,GABRE,GABRQ,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,PASD1,PRRG3"
TCGA.AG.3909.01A	23	150789369	151126994	31	0.1664	NEUTRAL	NA	6	"CNGA2,FATE1,GABRE,MAGEA4,PASD1,PRRG3"
TCGA.AA.A00N.01A	23	150789369	151806627	55	0.2353	NEUTRAL	NA	10	"CNGA2,FATE1,GABRA3,GABRE,MAGEA10,MAGEA10-MAGEA5,MAGEA4,MAGEA5,PASD1,PRRG3"
TCGA.AA.A00L.01A	23	150867193	150868970	3	0.3274	NEUTRAL	NA	1	PRRG3
TCGA.CK.5914.01A	23	150867193	150890346	8	-0.4067	NEUTRAL	NA	2	"FATE1,PRRG3"
TCGA.AA.3875	23	150867742	151318431	183	-0.439	NEUTRAL	NA	8	"CNGA2,FATE1,GABRE,MAGEA10,MAGEA10-MAGEA5,MAGEA4,MAGEA5,PRRG3"
TCGA.AG.3906.01A	23	150885734	152613055	86	0.0383	NEUTRAL	NA	24	"CETN2,CNGA2,CSAG1,CSAG3,FATE1,GABRA3,GABRE,GABRQ,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,NSDHL,PNMA3,PNMA5,PNMA6A,ZNF185,ZNF275"
TCGA.AA.A01Q.01A	23	150907236	152686049	76	0.0616	NEUTRAL	NA	24	"CETN2,CNGA2,CSAG1,CSAG3,GABRA3,GABRE,GABRQ,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,NSDHL,PNMA3,PNMA5,PNMA6A,ZFP92,ZNF185,ZNF275"
TCGA.AA.3973	23	151041578	151042243	3	0.0553	NEUTRAL	NA	0	None
TCGA.AA.A02E.01A	23	151092160	153994474	317	-0.1763	NEUTRAL	NA	72	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CETN2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MECP2,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,ZFP92,ZNF185,ZNF275"
TCGA.AA.A024.01A	23	151126994	152980965	117	0.0435	NEUTRAL	NA	31	"ATP2B3,BCAP31,BGN,CETN2,CSAG1,CSAG3,DUSP9,FAM58A,GABRA3,GABRE,GABRQ,HAUS7,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA5,MAGEA6,NSDHL,PNCK,PNMA3,PNMA5,PNMA6A,SLC6A8,TREX2,ZFP92,ZNF185,ZNF275"
TCGA.AG.3909.01A	23	151128041	151302966	7	-0.4127	NEUTRAL	NA	4	"GABRE,MAGEA10,MAGEA10-MAGEA5,MAGEA5"
TCGA.AA.3941	23	151160382	151801286	139	-0.0541	NEUTRAL	NA	4	"GABRA3,MAGEA10,MAGEA10-MAGEA5,MAGEA5"
TCGA.AA.3875	23	151321442	152192160	218	0.1724	NEUTRAL	NA	13	"CETN2,CSAG1,CSAG3,GABRA3,GABRQ,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,NSDHL,PNMA5,ZNF185"
TCGA.AG.3909.01A	23	151336673	151562827	13	0.1779	NEUTRAL	NA	1	GABRA3
TCGA.AA.3850	23	151743048	154030734	424	0.32635	NEUTRAL	NA	67	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CETN2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GAB3,GABRQ,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,MECP2,MPP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,ZFP92,ZNF185,ZNF275"
TCGA.CK.5914.01A	23	151808797	151998099	20	-0.3252	NEUTRAL	NA	9	"CETN2,CSAG1,CSAG3,GABRQ,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6"
TCGA.AA.A00N.01A	23	151815357	151935783	14	-0.2046	NEUTRAL	NA	8	"CSAG1,CSAG3,GABRQ,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6"
TCGA.AA.3860	23	151869764	152216058	141	0.0199	NEUTRAL	NA	11	"CETN2,CSAG1,CSAG3,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,NSDHL,PNMA5,ZNF185"
TCGA.AA.A00N.01A	23	151999152	152097064	18	0.3146	NEUTRAL	NA	3	"CETN2,NSDHL,ZNF185"
TCGA.CK.5914.01A	23	151999152	152097064	18	0.2628	NEUTRAL	NA	3	"CETN2,NSDHL,ZNF185"
TCGA.AG.A00C.01A	23	152018758	152100167	12	0.1548	NEUTRAL	NA	2	"NSDHL,ZNF185"
TCGA.AG.3909.01A	23	152018758	152113780	16	0.2926	NEUTRAL	NA	2	"NSDHL,ZNF185"
TCGA.AG.A023.01A	23	152085613	155239443	371	0.1169	NEUTRAL	NA	76	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IL9R,IRAK1,L1CAM,LAGE3,MAGEA1,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VAMP7,VBP1,ZFP92,ZNF185,ZNF275"
TCGA.CK.5914.01A	23	152100167	153277128	235	-0.3611	NEUTRAL	NA	30	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,DUSP9,FAM58A,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MAGEA1,NAA10,PDZD4,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,SLC6A8,SRPK3,SSR4,TMEM187,TREX2,ZFP92,ZNF185,ZNF275"
TCGA.AG.A016.01A	23	152128231	155149424	336	-0.1736	NEUTRAL	NA	75	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VAMP7,VBP1,ZFP92,ZNF185,ZNF275"
TCGA.AF.3914.01A	23	152158746	153660580	250	-0.1673	NEUTRAL	NA	41	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,DNASE1L1,DUSP9,EMD,FAM58A,FLNA,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MAGEA1,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,RPL10,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,ZFP92,ZNF275"
TCGA.EI.6510	23	152180973	154925044	387	-0.0433	NEUTRAL	NA	72	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF275"
TCGA.AA.3875	23	152193049	152214025	22	-0.1423	NEUTRAL	NA	0	None
TCGA.AA.3875	23	152216058	154925044	360	0.2014	NEUTRAL	NA	72	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF275"
TCGA.AF.2692	23	152605439	153899112	180	0.0385	NEUTRAL	NA	49	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CTAG1A,CTAG1B,CTAG2,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,ZFP92,ZNF275"
TCGA.AG.A01W.01A	23	152706426	152709123	4	-0.3146	NEUTRAL	NA	0	None
TCGA.A6.3810.01A	23	152720303	153792117	365	0.1072	NEUTRAL	NA	43	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,UBL4A"
TCGA.DC.6155	23	152721840	153886393	149	0.3703	NEUTRAL	NA	46	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CTAG1A,CTAG1B,CTAG2,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,UBL4A"
TCGA.AG.A01W.01A	23	152725350	152794347	21	-0.1482	NEUTRAL	NA	2	"BGN,HAUS7"
TCGA.AA.A00N.01A	23	152735878	152815461	18	-0.4898	NEUTRAL	NA	3	"ATP2B3,BGN,HAUS7"
TCGA.AG.3906.01A	23	152801669	152835024	16	0.1417	NEUTRAL	NA	1	ATP2B3
TCGA.AG.A01W.01A	23	152802795	152937218	62	0.2129	NEUTRAL	NA	4	"ATP2B3,DUSP9,FAM58A,PNCK"
TCGA.AA.A00N.01A	23	152818455	152830341	8	0.147	NEUTRAL	NA	1	ATP2B3
TCGA.AG.3909.01A	23	152818455	153944252	287	-0.2545	NEUTRAL	NA	45	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,CTAG1A,CTAG1B,CTAG2,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GAB3,GDI1,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,UBL4A"
TCGA.AG.4009.01A	23	152853604	153577165	158	-0.0648	NEUTRAL	NA	26	"ABCD1,ARHGAP4,AVPR2,BCAP31,DUSP9,FAM58A,FLNA,HCFC1,IDH3G,IRAK1,L1CAM,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,PNCK,RENBP,SLC6A8,SRPK3,SSR4,TEX28,TKTL1,TMEM187"
TCGA.AG.A01W.01A	23	152937569	153211040	26	-0.4368	NEUTRAL	NA	14	"ABCD1,ARHGAP4,AVPR2,BCAP31,IDH3G,L1CAM,NAA10,PDZD4,PLXNB3,PNCK,RENBP,SLC6A8,SRPK3,SSR4"
TCGA.AA.A00N.01A	23	152988916	153539155	168	-0.4432	NEUTRAL	NA	21	"ABCD1,ARHGAP4,AVPR2,BCAP31,HCFC1,IDH3G,IRAK1,L1CAM,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,RENBP,SRPK3,SSR4,TEX28,TKTL1,TMEM187"
TCGA.AA.A01Q.01A	23	152994647	153191522	94	-0.3605	NEUTRAL	NA	9	"ABCD1,ARHGAP4,AVPR2,IDH3G,L1CAM,PDZD4,PLXNB3,SRPK3,SSR4"
TCGA.AA.3967.01A	23	153002559	153047518	21	0.2377	NEUTRAL	NA	3	"ABCD1,PLXNB3,SRPK3"
TCGA.G4.6322	23	153056531	154925044	203	-0.1173	NEUTRAL	NA	55	"ARHGAP4,ATP6AP1,AVPR2,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,RAB39B,RENBP,RPL10,SLC10A3,SMIM9,SPRY3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,UBL4A,VBP1"
TCGA.AG.3891.01A	23	153128071	153174507	29	0.2892	NEUTRAL	NA	3	"ARHGAP4,AVPR2,L1CAM"
TCGA.AG.3891.01A	23	153174843	153179190	5	-0.4484	NEUTRAL	NA	1	ARHGAP4
TCGA.AG.3891.01A	23	153184289	153661937	123	0.2737	NEUTRAL	NA	18	"ARHGAP4,ATP6AP1,DNASE1L1,EMD,FLNA,HCFC1,IRAK1,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,RENBP,RPL10,TAZ,TEX28,TKTL1,TMEM187"
TCGA.AA.A01Q.01A	23	153200698	153209303	7	-0.4157	NEUTRAL	NA	1	RENBP
TCGA.AA.A00O.01A	23	153200698	155239443	249	-0.1267	NEUTRAL	NA	50	"ATP6AP1,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HCFC1,IKBKG,IL9R,IRAK1,LAGE3,MECP2,MPP1,MTCP1,OPN1LW,OPN1MW,OPN1MW2,PLXNA3,RAB39B,RENBP,RPL10,SLC10A3,SMIM9,SPRY3,TAZ,TEX28,TKTL1,TMEM187,TMLHE,UBL4A,VAMP7,VBP1"
TCGA.AG.A015.01A	23	153209303	153284384	28	0.1999	NEUTRAL	NA	4	"HCFC1,IRAK1,RENBP,TMEM187"
TCGA.AA.A01Q.01A	23	153247464	153649205	58	-0.2543	NEUTRAL	NA	13	"DNASE1L1,EMD,FLNA,IRAK1,MECP2,OPN1LW,OPN1MW,OPN1MW2,RPL10,TAZ,TEX28,TKTL1,TMEM187"
TCGA.CK.5914.01A	23	153277930	153551501	31	0.0921	NEUTRAL	NA	7	"IRAK1,MECP2,OPN1LW,OPN1MW,OPN1MW2,TEX28,TKTL1"
TCGA.AG.A01W.01A	23	153279971	153302134	14	-0.3458	NEUTRAL	NA	2	"IRAK1,MECP2"
TCGA.AG.A015.01A	23	153295786	153556193	22	-0.3053	NEUTRAL	NA	6	"MECP2,OPN1LW,OPN1MW,OPN1MW2,TEX28,TKTL1"
TCGA.AA.A010.01A	23	153362995	153524161	12	-0.0619	NEUTRAL	NA	6	"MECP2,OPN1LW,OPN1MW,OPN1MW2,TEX28,TKTL1"
TCGA.AG.A01W.01A	23	153367044	153936016	97	0.1585	NEUTRAL	NA	24	"ATP6AP1,CTAG1A,CTAG1B,CTAG2,DNASE1L1,EMD,FAM3A,FAM50A,FLNA,G6PD,GAB3,GDI1,IKBKG,LAGE3,OPN1LW,OPN1MW,OPN1MW2,PLXNA3,RPL10,SLC10A3,TAZ,TEX28,TKTL1,UBL4A"
TCGA.AA.A024.01A	23	153453231	153582256	22	0.2291	NEUTRAL	NA	5	"FLNA,OPN1MW,OPN1MW2,TEX28,TKTL1"
TCGA.CM.4750.01A	23	153458932	155254944	281	0.0188	NEUTRAL	NA	44	"ATP6AP1,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,IKBKG,IL9R,LAGE3,MPP1,MTCP1,OPN1MW,OPN1MW2,PLXNA3,RAB39B,RPL10,SLC10A3,SMIM9,SPRY3,TAZ,TEX28,TKTL1,TMLHE,UBL4A,VAMP7,VBP1"
TCGA.CK.5914.01A	23	153553630	153881474	121	-0.4055	NEUTRAL	NA	19	"ATP6AP1,CTAG1A,CTAG1B,CTAG2,DNASE1L1,EMD,FAM3A,FAM50A,FLNA,G6PD,GDI1,IKBKG,LAGE3,PLXNA3,RPL10,SLC10A3,TAZ,TKTL1,UBL4A"
TCGA.AG.A015.01A	23	153557845	153627631	22	0.0129	NEUTRAL	NA	4	"EMD,FLNA,RPL10,TKTL1"
TCGA.AA.A01K.01A	23	153594365	153925356	69	-0.1782	NEUTRAL	NA	19	"ATP6AP1,CTAG1A,CTAG1B,CTAG2,DNASE1L1,EMD,FAM3A,FAM50A,FLNA,G6PD,GAB3,GDI1,IKBKG,LAGE3,PLXNA3,RPL10,SLC10A3,TAZ,UBL4A"
TCGA.AG.A015.01A	23	153628096	153649205	15	-0.4388	NEUTRAL	NA	3	"DNASE1L1,RPL10,TAZ"
TCGA.AG.4009.01A	23	153628923	153657387	14	-0.0842	NEUTRAL	NA	4	"ATP6AP1,DNASE1L1,RPL10,TAZ"
TCGA.AA.3844	23	153629662	154925044	132	0.3729	NEUTRAL	NA	36	"ATP6AP1,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,IKBKG,LAGE3,MPP1,MTCP1,PLXNA3,RAB39B,RPL10,SLC10A3,SMIM9,SPRY3,TAZ,TMLHE,UBL4A,VBP1"
TCGA.AG.A015.01A	23	153657387	153698748	28	0.3113	NEUTRAL	NA	4	"ATP6AP1,FAM50A,GDI1,PLXNA3"
TCGA.AG.A008.01A	23	153662515	155171558	168	0.2186	NEUTRAL	NA	34	"ATP6AP1,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,IKBKG,LAGE3,MPP1,MTCP1,PLXNA3,RAB39B,SLC10A3,SMIM9,SPRY3,TMLHE,UBL4A,VAMP7,VBP1"
TCGA.AG.3891.01A	23	153690431	153780166	33	0.2959	NEUTRAL	NA	7	"FAM3A,G6PD,IKBKG,LAGE3,PLXNA3,SLC10A3,UBL4A"
TCGA.AG.4009.01A	23	153691713	153715809	18	-0.4649	NEUTRAL	NA	4	"LAGE3,PLXNA3,SLC10A3,UBL4A"
TCGA.AF.3914.01A	23	153691713	155239443	158	0.0275	NEUTRAL	NA	32	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,IL9R,LAGE3,MPP1,MTCP1,PLXNA3,RAB39B,SLC10A3,SMIM9,SPRY3,TMLHE,UBL4A,VAMP7,VBP1"
TCGA.AG.A015.01A	23	153706581	155232505	136	-0.1275	NEUTRAL	NA	31	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,IL9R,LAGE3,MPP1,MTCP1,RAB39B,SLC10A3,SMIM9,SPRY3,TMLHE,UBL4A,VAMP7,VBP1"
TCGA.CM.6168	23	153713166	154925044	126	0.0085	NEUTRAL	NA	28	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,MPP1,MTCP1,RAB39B,SLC10A3,SMIM9,SPRY3,TMLHE,UBL4A,VBP1"
TCGA.AG.4009.01A	23	153735133	155239443	139	-2.00E-04	NEUTRAL	NA	28	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,IL9R,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.A6.3808.01A	23	153735133	155254944	160	0.1502	NEUTRAL	NA	28	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,IL9R,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.AA.A024.01A	23	153735493	155227341	132	-0.0014	NEUTRAL	NA	28	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,IL9R,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.AG.3906.01A	23	153780166	153944252	12	-0.1346	NEUTRAL	NA	5	"CTAG1A,CTAG1B,CTAG2,GAB3,IKBKG"
TCGA.AG.3891.01A	23	153880386	153944252	11	-0.4441	NEUTRAL	NA	2	"CTAG2,GAB3"
TCGA.A6.6141	23	153887669	154925044	109	0.0199	NEUTRAL	NA	20	"BRCC3,CLIC2,CMC4,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,GAB3,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VBP1"
TCGA.AG.3885	23	153926427	154925044	103	-0.0592	NEUTRAL	NA	20	"BRCC3,CLIC2,CMC4,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,GAB3,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VBP1"
TCGA.AG.A01W.01A	23	153954818	154427905	28	0.1752	NEUTRAL	NA	16	"BRCC3,CMC4,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,GAB3,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,SMIM9,VBP1"
TCGA.AA.3982	23	153963755	154925044	95	0.2142	NEUTRAL	NA	20	"BRCC3,CLIC2,CMC4,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,GAB3,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VBP1"
TCGA.AA.A01Q.01A	23	153979166	154001387	12	-0.4429	NEUTRAL	NA	2	"DKC1,GAB3"
TCGA.AG.3611.01A	23	153991171	154020377	26	-0.1867	NEUTRAL	NA	2	"DKC1,MPP1"
TCGA.AG.3891.01A	23	153993116	155239443	116	-0.0557	NEUTRAL	NA	21	"BRCC3,CLIC2,CMC4,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,IL9R,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.AG.3906.01A	23	154001387	154091307	22	0.0495	NEUTRAL	NA	4	"DKC1,F8,MPP1,SMIM9"
TCGA.AA.A01Q.01A	23	154002835	154009475	6	-0.1695	NEUTRAL	NA	2	"DKC1,MPP1"
TCGA.CK.5914.01A	23	154007400	154319035	64	-0.0482	NEUTRAL	NA	13	"BRCC3,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,SMIM9"
TCGA.AA.A01K.01A	23	154007400	155239443	99	0.0711	NEUTRAL	NA	20	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,IL9R,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.AA.A02E.01A	23	154007400	155239443	100	0.0743	NEUTRAL	NA	20	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,IL9R,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.AA.A01Q.01A	23	154009837	154254976	41	0.1771	NEUTRAL	NA	9	"F8,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,MPP1,SMIM9"
TCGA.AA.A010.01A	23	154032951	154065833	7	-0.2815	NEUTRAL	NA	3	"F8,MPP1,SMIM9"
TCGA.AA.A00N.01A	23	154033510	154114319	10	-0.3481	NEUTRAL	NA	6	"F8,H2AFB1,H2AFB2,H2AFB3,MPP1,SMIM9"
TCGA.AG.3909.01A	23	154033510	154348222	52	-0.2287	NEUTRAL	NA	13	"BRCC3,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,SMIM9"
TCGA.AG.3611.01A	23	154033510	155239443	78	0.1835	NEUTRAL	NA	20	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,IL9R,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.AG.3906.01A	23	154130289	154279918	26	0.1107	NEUTRAL	NA	2	"F8,FUNDC2"
TCGA.AG.A00C.01A	23	154159274	154254976	15	0.1843	NEUTRAL	NA	1	F8
TCGA.AA.A010.01A	23	154175972	154261627	15	-0.2497	NEUTRAL	NA	2	"F8,FUNDC2"
TCGA.AA.A00N.01A	23	154215480	154227707	4	0.0694	NEUTRAL	NA	1	F8
TCGA.AA.A01Q.01A	23	154261627	154456654	13	-0.4221	NEUTRAL	NA	5	"BRCC3,CMC4,FUNDC2,MTCP1,VBP1"
TCGA.AG.3906.01A	23	154317485	154466990	11	0.2253	NEUTRAL	NA	2	"BRCC3,VBP1"
TCGA.AG.A00C.01A	23	154327528	154348222	4	0.2099	NEUTRAL	NA	1	BRCC3
TCGA.AA.A010.01A	23	154327528	155171558	38	-0.3853	NEUTRAL	NA	13	"BRCC3,CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,RAB39B,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.CK.5914.01A	23	154448408	154774710	19	-0.1338	NEUTRAL	NA	10	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,RAB39B,TMLHE,VBP1"
TCGA.AA.A01Q.01A	23	154464480	155227341	31	-0.0563	NEUTRAL	NA	13	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,IL9R,RAB39B,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.AG.3906.01A	23	154490047	155171558	26	-0.2034	NEUTRAL	NA	11	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,RAB39B,SPRY3,TMLHE,VAMP7"
TCGA.AA.3941	23	154523207	154925044	27	-0.0081	NEUTRAL	NA	9	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,SPRY3,TMLHE"
TCGA.AA.A00N.01A	23	154563611	154743629	5	0.1257	NEUTRAL	NA	8	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,TMLHE"
TCGA.AG.3909.01A	23	154563611	155009837	13	-0.0832	NEUTRAL	NA	9	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,SPRY3,TMLHE"
TCGA.AG.A00C.01A	23	154563611	155239443	30	0.1325	NEUTRAL	NA	11	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,IL9R,SPRY3,TMLHE,VAMP7"
TCGA.A6.2681	23	154735697	154925044	23	0.0812	NEUTRAL	NA	2	"SPRY3,TMLHE"
TCGA.AF.2692	23	154917684	154925044	2	-0.4904	NEUTRAL	NA	1	SPRY3
TCGA.AA.A00L.01A	23	155003485	155009837	6	0.0426	NEUTRAL	NA	1	SPRY3
TCGA.AA.3967.01A	23	155003485	155239443	22	0.2554	NEUTRAL	NA	3	"IL9R,SPRY3,VAMP7"
TCGA.AA.A00Q.01A	23	155003485	155239443	21	0.3609	NEUTRAL	NA	3	"IL9R,SPRY3,VAMP7"
TCGA.AG.A014.01A	23	155003485	155239443	23	-0.07	NEUTRAL	NA	3	"IL9R,SPRY3,VAMP7"
TCGA.AH.6549.01A	23	155003485	155254944	28	-0.1264	NEUTRAL	NA	3	"IL9R,SPRY3,VAMP7"
TCGA.AA.A00A.01A	23	155003836	155009837	5	-0.2312	NEUTRAL	NA	1	SPRY3
TCGA.A6.3810.01A	23	155005666	155254944	26	-0.2758	NEUTRAL	NA	3	"IL9R,SPRY3,VAMP7"
TCGA.AG.A01L.01A	23	155149424	155239443	13	-0.4954	NEUTRAL	NA	2	"IL9R,VAMP7"
TCGA.AA.3509.01A	23	155149424	155254944	17	0.2223	NEUTRAL	NA	2	"IL9R,VAMP7"
TCGA.AA.A00N.01A	23	155169343	155254944	16	0.0501	NEUTRAL	NA	2	"IL9R,VAMP7"
TCGA.AG.A008.01A	23	155227341	155239443	10	-0.2037	NEUTRAL	NA	1	IL9R
TCGA.AA.3930.01A	23	155227341	155245049	11	0.0874	NEUTRAL	NA	1	IL9R
TCGA.CK.5914.01A	23	155227341	155254944	14	0.0572	NEUTRAL	NA	1	IL9R
TCGA.CM.6165.01A	23	155227341	155254944	14	-0.2372	NEUTRAL	NA	1	IL9R
TCGA.AA.A02K.01A	23	155227352	155239481	9	-0.2979	NEUTRAL	NA	1	IL9R
TCGA.AA.A00L.01A	23	155232505	155239443	7	0.0176	NEUTRAL	NA	1	IL9R
TCGA.AG.A02G.01A	24	2654981	2734812	8	0.0447	NEUTRAL	NA	2	"RPS4Y1,SRY"
TCGA.A6.3808.01A	24	2654981	2843109	11	0.093	NEUTRAL	NA	3	"RPS4Y1,SRY,ZFY"
TCGA.AA.3930.01A	24	2654981	6115338	25	-0.2154	NEUTRAL	NA	6	"PCDH11Y,RPS4Y1,SRY,TGIF2LY,TSPY2,ZFY"
TCGA.AG.A032.01A	24	2654981	6942533	37	-0.0233	NEUTRAL	NA	8	"AMELY,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TSPY2,ZFY"
TCGA.AG.A016.01A	24	2654981	6948723	38	-0.2478	NEUTRAL	NA	8	"AMELY,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TSPY2,ZFY"
TCGA.AA.A00J.01A	24	2654981	7171926	41	0.2821	NEUTRAL	NA	8	"AMELY,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TSPY2,ZFY"
TCGA.AG.A02X.01A	24	2654981	7235319	48	0.0042	NEUTRAL	NA	8	"AMELY,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TSPY2,ZFY"
TCGA.AA.A004.01A	24	2654981	22942770	177	0.3782	NEUTRAL	NA	30	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.A01I.01A	24	2654981	22942770	181	-0.0182	NEUTRAL	NA	30	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.A029.01A	24	2654981	22942770	178	-0.0783	NEUTRAL	NA	30	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AF.3914.01A	24	2654981	22942770	182	-0.4907	NEUTRAL	NA	30	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AG.A011.01A	24	2654981	22942770	180	-0.0303	NEUTRAL	NA	30	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.3967.01A	24	2654981	25375680	181	-0.2158	NEUTRAL	NA	46	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AG.A00Y.01A	24	2654981	25375680	181	-0.0643	NEUTRAL	NA	46	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AG.A01L.01A	24	2654981	25375680	182	-0.5018	NEUTRAL	NA	46	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AH.6549.01A	24	2654981	25375680	191	0.1213	NEUTRAL	NA	46	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.CM.6165.01A	24	2654981	25375680	192	0.0934	NEUTRAL	NA	46	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.DM.A28M.01A	24	2654981	25375680	191	0.2325	NEUTRAL	NA	46	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.A024.01A	24	2654981	27190045	183	-0.0462	NEUTRAL	NA	48	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY1,CDY1B,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AG.A00H.01A	24	2654981	27190045	182	0.0738	NEUTRAL	NA	48	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY1,CDY1B,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.CM.4744.01A	24	2654981	27190045	192	-0.0869	NEUTRAL	NA	48	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY1,CDY1B,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.A02K.01A	24	2654999	27190046	194	0.1005	NEUTRAL	NA	48	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY1,CDY1B,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.CK.4948.01B	24	4966209	21154352	4	0.2627	NEUTRAL	NA	23	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,HSFY1,HSFY2,NLGN4Y,PCDH11Y,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AY.A54L.01A	24	4966209	21877208	5	0.2004	NEUTRAL	NA	24	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.3939.01A	24	6734020	14518553	25	-0.2484	NEUTRAL	NA	7	"AMELY,TBL1Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8"
TCGA.AA.3930.01A	24	6734020	14532021	26	0.141	NEUTRAL	NA	7	"AMELY,TBL1Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8"
TCGA.A6.3808.01A	24	6734020	25375680	163	-0.1532	NEUTRAL	NA	40	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AG.A016.01A	24	6958098	22942770	139	-0.1628	NEUTRAL	NA	23	"CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,RPS4Y2,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AG.A032.01A	24	6959424	25375680	139	0.0191	NEUTRAL	NA	39	"BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.A01Q.01A	24	7171926	16952303	2	0.0929	NEUTRAL	NA	12	"DDX3Y,NLGN4Y,TMSB4Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B"
TCGA.AA.A00J.01A	24	7193920	21906231	117	-0.1805	NEUTRAL	NA	20	"CD24,CDY2A,CDY2B,DDX3Y,HSFY1,HSFY2,KDM5D,NLGN4Y,TMSB4Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.DM.A282.01A	24	14532021	21154352	2	0.1658	NEUTRAL	NA	14	"CD24,CDY2A,CDY2B,DDX3Y,HSFY1,HSFY2,NLGN4Y,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.3930.01A	24	14821358	21872208	112	-0.1586	NEUTRAL	NA	15	"CD24,CDY2A,CDY2B,DDX3Y,HSFY1,HSFY2,KDM5D,NLGN4Y,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AZ.4684.01A	24	14889944	14902303	6	0.1052	NEUTRAL	NA	1	USP9Y
TCGA.AA.A00O.01A	24	16952303	16952303	1	0.2054	NEUTRAL	NA	1	NLGN4Y
TCGA.AG.A01N.01A	24	16952303	16952303	1	-0.0753	NEUTRAL	NA	1	NLGN4Y
TCGA.AA.A00D.01A	24	19990938	20934945	7	0.2356	NEUTRAL	NA	6	"CDY2A,CDY2B,HSFY1,HSFY2,XKRY,XKRY2"
TCGA.AA.3815.01A	24	21154352	21154352	1	0.0083	NEUTRAL	NA	1	CD24
TCGA.CM.4750.01A	24	21154352	21154352	1	0.2238	NEUTRAL	NA	1	CD24
TCGA.AA.A00K.01A	24	21765646	21903581	17	-0.2329	NEUTRAL	NA	1	KDM5D
TCGA.AA.A00J.01A	24	22737678	22942770	13	0.3441	NEUTRAL	NA	2	"EIF1AY,RPS4Y2"
TCGA.AA.3930.01A	24	22737678	23548037	16	-0.0485	NEUTRAL	NA	3	"EIF1AY,PRORY,RPS4Y2"
TCGA.AA.3522	1	564620	761731	4	0.4177	SMALL-GAIN	FOCAL	3	"OR4F16,OR4F29,OR4F3"
TCGA.AA.A01X	1	564620	761731	4	0.4911	SMALL-GAIN	FOCAL	3	"OR4F16,OR4F29,OR4F3"
TCGA.DM.A28K	1	564620	765268	5	0.4078	SMALL-GAIN	FOCAL	3	"OR4F16,OR4F29,OR4F3"
TCGA.AA.A02K.01A	1	801895	802332	2	0.5941	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	1	1323429	1362419	8	0.3849	SMALL-GAIN	FOCAL	4	"ANKRD65,CCNL2,MRPL20,TMEM88B"
TCGA.AG.A01W.01A	1	1624744	1628670	5	0.6453	SMALL-GAIN	FOCAL	1	CDK11B
TCGA.AA.A01Q.01A	1	1847833	1905417	9	0.6512	SMALL-GAIN	FOCAL	3	"CALML6,CFAP74,TMEM52"
TCGA.AG.3906.01A	1	3544016	3563180	8	0.5585	SMALL-GAIN	FOCAL	2	"TPRG1L,WRAP73"
TCGA.DM.A28H	1	4150784	4750118	377	0.6544	SMALL-GAIN	FOCAL	1	AJAP1
TCGA.DM.A28H	1	4894143	5102143	133	0.6243	SMALL-GAIN	FOCAL	0	None
TCGA.CM.4752	1	5467214	5805604	183	0.5365	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	5965695	6038278	12	0.54	SMALL-GAIN	FOCAL	1	NPHP4
TCGA.AG.3891.01A	1	6228162	6378509	23	0.5833	SMALL-GAIN	FOCAL	7	"ACOT7,CHD5,GPR153,HES3,ICMT,RNF207,RPL22"
TCGA.AZ.4684.01A	1	6278288	6324619	13	0.5557	SMALL-GAIN	FOCAL	5	"ACOT7,GPR153,HES3,ICMT,RNF207"
TCGA.AZ.4682	1	7817855	7888437	34	0.3904	SMALL-GAIN	FOCAL	3	"CAMTA1,PER3,VAMP3"
TCGA.AA.A010.01A	1	7886498	7913320	13	0.6742	SMALL-GAIN	FOCAL	2	"PER3,UTS2"
TCGA.AA.A010.01A	1	8378109	8425824	20	0.4693	SMALL-GAIN	FOCAL	2	"RERE,SLC45A1"
TCGA.CM.4750.01A	1	8616486	8923266	8	0.4315	SMALL-GAIN	FOCAL	2	"ENO1,RERE"
TCGA.AA.A010.01A	1	9005895	9075129	15	0.6038	SMALL-GAIN	FOCAL	2	"CA6,SLC2A7"
TCGA.AG.A00C.01A	1	9097595	9129482	8	0.6035	SMALL-GAIN	FOCAL	1	SLC2A5
TCGA.AG.3906.01A	1	9633391	9661114	5	0.4543	SMALL-GAIN	FOCAL	2	"SLC25A33,TMEM201"
TCGA.AA.A010.01A	1	10032082	10459078	85	0.436	SMALL-GAIN	FOCAL	5	"KIF1B,NMNAT1,PGD,RBP7,UBE4B"
TCGA.AA.A00N.01A	1	10132048	10431170	70	0.6632	SMALL-GAIN	FOCAL	2	"KIF1B,UBE4B"
TCGA.AG.A00C.01A	1	10434327	10521566	22	0.4403	SMALL-GAIN	FOCAL	6	"APITD1,APITD1-CORT,CORT,DFFA,KIF1B,PGD"
TCGA.AG.A01W.01A	1	10606933	10642310	17	0.3882	SMALL-GAIN	FOCAL	1	PEX14
TCGA.AA.A010.01A	1	11007733	11078742	11	0.5229	SMALL-GAIN	FOCAL	2	"C1orf127,TARDBP"
TCGA.AG.3891.01A	1	11014037	11094825	14	0.4156	SMALL-GAIN	FOCAL	3	"C1orf127,MASP2,TARDBP"
TCGA.AG.A01W.01A	1	11078381	11082334	3	0.4535	SMALL-GAIN	FOCAL	1	TARDBP
TCGA.AA.3930.01A	1	11114834	11116614	3	0.497	SMALL-GAIN	FOCAL	1	SRM
TCGA.AG.3891.01A	1	11115798	11169655	30	0.59	SMALL-GAIN	FOCAL	3	"EXOSC10,MTOR,SRM"
TCGA.AG.A00C.01A	1	11116614	11169655	29	0.385	SMALL-GAIN	FOCAL	3	"EXOSC10,MTOR,SRM"
TCGA.AA.A01Q.01A	1	11172845	11181997	7	0.398	SMALL-GAIN	FOCAL	1	MTOR
TCGA.AA.3930.01A	1	12049224	12327843	57	0.4211	SMALL-GAIN	FOCAL	5	"MFN2,MIIP,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AG.3909.01A	1	12144468	12202295	13	0.6208	SMALL-GAIN	FOCAL	1	TNFRSF8
TCGA.AA.A00N.01A	1	15420648	15833347	79	0.4319	SMALL-GAIN	FOCAL	9	"C1orf195,CASP9,CELA2A,CELA2B,CTRC,EFHD2,FHAD1,KAZN,TMEM51"
TCGA.AG.3909.01A	1	15541542	15813732	31	0.4747	SMALL-GAIN	FOCAL	6	"CELA2A,CELA2B,CTRC,EFHD2,FHAD1,TMEM51"
TCGA.AA.A010.01A	1	15894256	15944129	9	0.6076	SMALL-GAIN	FOCAL	3	"AGMAT,DDI2,DNAJC16"
TCGA.AG.4009.01A	1	16046181	16069299	10	0.4347	SMALL-GAIN	FOCAL	3	"PLEKHM2,SLC25A34,TMEM82"
TCGA.AG.A01W.01A	1	16138332	16145966	8	0.4886	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3980.01A	1	16356916	16358683	3	0.6407	SMALL-GAIN	FOCAL	1	CLCNKA
TCGA.AG.3611.01A	1	16632258	16736047	9	0.5821	SMALL-GAIN	FOCAL	3	"FBXO42,SPATA21,SZRD1"
TCGA.AG.4009.01A	1	16725801	16770088	11	0.6731	SMALL-GAIN	FOCAL	2	"NECAP2,SPATA21"
TCGA.AA.A010.01A	1	16770088	16785310	6	0.4044	SMALL-GAIN	FOCAL	1	NECAP2
TCGA.AG.3909.01A	1	17359499	17721985	74	0.6658	SMALL-GAIN	FOCAL	6	"PADI1,PADI2,PADI3,PADI4,PADI6,SDHB"
TCGA.AG.4009.01A	1	17914860	18014020	18	0.6213	SMALL-GAIN	FOCAL	1	ARHGEF10L
TCGA.AG.3909.01A	1	17961313	18704686	22	0.5556	SMALL-GAIN	FOCAL	3	"ACTL8,ARHGEF10L,IGSF21"
TCGA.AA.A010.01A	1	19431063	19610453	114	0.3867	SMALL-GAIN	FOCAL	4	"AKR7A3,EMC1,MRTO4,UBR4"
TCGA.CK.5914.01A	1	20020885	20073604	8	0.5705	SMALL-GAIN	FOCAL	1	TMCO4
TCGA.AA.A010.01A	1	20246749	20669534	42	0.6523	SMALL-GAIN	FOCAL	8	"PLA2G2A,PLA2G2C,PLA2G2D,PLA2G2E,PLA2G2F,PLA2G5,UBXN10,VWA5B1"
TCGA.AG.A00C.01A	1	21071283	21155593	19	0.4352	SMALL-GAIN	FOCAL	2	"EIF4G3,HP1BP3"
TCGA.AA.A01Q.01A	1	21154073	21546397	26	0.3956	SMALL-GAIN	FOCAL	2	"ECE1,EIF4G3"
TCGA.AA.A00N.01A	1	21167307	21798159	54	0.5838	SMALL-GAIN	FOCAL	3	"ECE1,EIF4G3,NBPF3"
TCGA.AG.4009.01A	1	21887069	21925940	12	0.5415	SMALL-GAIN	FOCAL	2	"ALPL,RAP1GAP"
TCGA.AA.A00N.01A	1	22041817	22109320	15	0.4197	SMALL-GAIN	FOCAL	1	USP48
TCGA.AA.A010.01A	1	22109320	22408167	87	0.5422	SMALL-GAIN	FOCAL	6	"CDC42,CELA3A,CELA3B,HSPG2,LDLRAD2,USP48"
TCGA.AF.2689	1	22814353	23386165	189	0.5263	SMALL-GAIN	FOCAL	9	"C1QA,C1QB,C1QC,C1orf234,EPHA8,EPHB2,KDM1A,LACTBL1,ZBTB40"
TCGA.AA.A010.01A	1	22915445	23346049	40	0.5941	SMALL-GAIN	FOCAL	8	"C1QA,C1QB,C1QC,C1orf234,EPHA8,EPHB2,KDM1A,LACTBL1"
TCGA.AG.A01W.01A	1	23994970	24003448	9	0.4548	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	1	24137170	24402612	30	0.6119	SMALL-GAIN	FOCAL	6	"CNR2,FUCA1,HMGCL,MYOM3,PNRC2,SRSF10"
TCGA.AA.A01Q.01A	1	24194351	24454583	14	0.3825	SMALL-GAIN	FOCAL	6	"CNR2,FUCA1,IL22RA1,MYOM3,PNRC2,SRSF10"
TCGA.AG.4009.01A	1	24383802	24485519	40	0.4019	SMALL-GAIN	FOCAL	3	"IFNLR1,IL22RA1,MYOM3"
TCGA.CK.5914.01A	1	24447276	24495860	12	0.5996	SMALL-GAIN	FOCAL	2	"IFNLR1,IL22RA1"
TCGA.AA.A00N.01A	1	24664116	24932079	40	0.4994	SMALL-GAIN	FOCAL	5	"GRHL3,NCMAP,NIPAL3,RCAN3,STPG1"
TCGA.AA.A010.01A	1	25290933	25735125	36	0.4001	SMALL-GAIN	FOCAL	6	"RHCE,RHD,RSRP1,RUNX3,SYF2,TMEM50A"
TCGA.AA.A00N.01A	1	25810567	26110123	25	0.4213	SMALL-GAIN	FOCAL	3	"LDLRAP1,MAN1C1,TMEM57"
TCGA.AA.A00N.01A	1	26288436	26356049	13	0.6759	SMALL-GAIN	FOCAL	2	"EXTL1,PAFAH2"
TCGA.AA.A010.01A	1	26288436	26378269	29	0.4505	SMALL-GAIN	FOCAL	4	"EXTL1,PAFAH2,SLC30A2,TRIM63"
TCGA.AA.A010.01A	1	26601415	26764612	49	0.5705	SMALL-GAIN	FOCAL	8	"AIM1L,CD52,CEP85,DHDDS,LIN28A,SH3BGRL3,UBXN11,ZNF683"
TCGA.AG.3891.01A	1	26799910	26887956	18	0.5244	SMALL-GAIN	FOCAL	2	"HMGN2,RPS6KA1"
TCGA.AA.A00N.01A	1	26872343	27089422	28	0.5327	SMALL-GAIN	FOCAL	2	"ARID1A,RPS6KA1"
TCGA.AG.3891.01A	1	27210609	27338856	22	0.5124	SMALL-GAIN	FOCAL	7	"FAM46B,GPATCH3,GPN2,KDF1,NR0B2,NUDC,TRNP1"
TCGA.AA.A01Q.01A	1	27426768	27589606	15	0.4723	SMALL-GAIN	FOCAL	2	"SLC9A1,WDTC1"
TCGA.AG.A00C.01A	1	27608662	27720851	52	0.3891	SMALL-GAIN	FOCAL	7	"CD164L2,FCN3,GPR3,MAP3K6,SYTL1,TMEM222,WDTC1"
TCGA.AG.A00C.01A	1	27939384	28211759	38	0.4204	SMALL-GAIN	FOCAL	6	"FAM76A,FGR,IFI6,PPP1R8,STX12,THEMIS2"
TCGA.AA.A010.01A	1	28240552	28815623	61	0.4104	SMALL-GAIN	FOCAL	10	"ATPIF1,DNAJC8,EYA3,MED18,PHACTR4,PTAFR,RPA2,SESN2,SMPDL3B,XKR8"
TCGA.AA.A00N.01A	1	28319861	28806935	45	0.4148	SMALL-GAIN	FOCAL	7	"ATPIF1,DNAJC8,EYA3,MED18,PHACTR4,PTAFR,SESN2"
TCGA.AG.A00C.01A	1	28856319	28887833	11	0.595	SMALL-GAIN	FOCAL	2	"RCC1,TRNAU1AP"
TCGA.AG.3906.01A	1	28920272	28939712	4	0.6718	SMALL-GAIN	FOCAL	2	"RAB42,TAF12"
TCGA.AA.A010.01A	1	29023392	29391466	28	0.5978	SMALL-GAIN	FOCAL	4	"EPB41,GMEB1,OPRD1,YTHDF2"
TCGA.AG.A00C.01A	1	29064754	29189207	6	0.6513	SMALL-GAIN	FOCAL	2	"OPRD1,YTHDF2"
TCGA.AA.A00N.01A	1	29313923	29391466	14	0.5863	SMALL-GAIN	FOCAL	1	EPB41
TCGA.AA.A010.01A	1	29586342	31196252	33	0.5118	SMALL-GAIN	FOCAL	2	"MATN1,PTPRU"
TCGA.AA.A00N.01A	1	29605487	29652046	22	0.5727	SMALL-GAIN	FOCAL	1	PTPRU
TCGA.AF.3914.01A	1	29605487	31210402	31	0.5225	SMALL-GAIN	FOCAL	3	"LAPTM5,MATN1,PTPRU"
TCGA.AG.4009.01A	1	29616141	31189589	19	0.5154	SMALL-GAIN	FOCAL	2	"MATN1,PTPRU"
TCGA.AG.4009.01A	1	31215263	31351419	6	0.4879	SMALL-GAIN	FOCAL	2	"LAPTM5,SDC3"
TCGA.AA.A01Q.01A	1	31406009	31538483	22	0.6235	SMALL-GAIN	FOCAL	1	PUM1
TCGA.AG.A00C.01A	1	31532062	31734329	6	0.4172	SMALL-GAIN	FOCAL	3	"NKAIN1,PUM1,SNRNP40"
TCGA.AA.A010.01A	1	31762054	31845729	15	0.5909	SMALL-GAIN	FOCAL	3	"FABP3,SNRNP40,ZCCHC17"
TCGA.AA.A00N.01A	1	32100795	32136137	23	0.5559	SMALL-GAIN	FOCAL	2	"COL16A1,PEF1"
TCGA.AG.4009.01A	1	32110355	32193004	50	0.437	SMALL-GAIN	FOCAL	3	"ADGRB2,COL16A1,PEF1"
TCGA.AA.A00N.01A	1	32256205	32279514	14	0.513	SMALL-GAIN	FOCAL	1	SPOCD1
TCGA.AG.4009.01A	1	32671344	32712995	22	0.4236	SMALL-GAIN	FOCAL	5	"DCDC2B,EIF3I,FAM167B,IQCC,TMEM234"
TCGA.AG.A00C.01A	1	32741524	32833903	18	0.5829	SMALL-GAIN	FOCAL	6	"BSDC1,FAM229A,HDAC1,LCK,MARCKSL1,TSSK3"
TCGA.AA.A010.01A	1	33547821	33646609	16	0.5877	SMALL-GAIN	FOCAL	2	"AZIN2,TRIM62"
TCGA.AG.3906.01A	1	33631023	33837838	22	0.4295	SMALL-GAIN	FOCAL	4	"A3GALT2,PHC2,TRIM62,ZNF362"
TCGA.AA.A010.01A	1	33985071	34088957	35	0.6167	SMALL-GAIN	FOCAL	1	CSMD2
TCGA.AG.3909.01A	1	33998613	34684223	70	0.5086	SMALL-GAIN	FOCAL	3	"C1orf94,CSMD2,HMGB4"
TCGA.AA.A010.01A	1	35496143	35578568	9	0.6326	SMALL-GAIN	FOCAL	2	"ZMYM1,ZMYM6"
TCGA.AA.A010.01A	1	35657782	35972185	49	0.59	SMALL-GAIN	FOCAL	3	"KIAA0319L,SFPQ,ZMYM4"
TCGA.CK.5914.01A	1	35900444	35972185	19	0.4576	SMALL-GAIN	FOCAL	1	KIAA0319L
TCGA.AA.A00N.01A	1	36053883	36106888	10	0.5165	SMALL-GAIN	FOCAL	2	"PSMB2,TFAP2E"
TCGA.AA.A00N.01A	1	36437578	36521201	16	0.4911	SMALL-GAIN	FOCAL	1	AGO3
TCGA.AG.3891.01A	1	36602756	36766436	22	0.6549	SMALL-GAIN	FOCAL	3	"MAP7D1,THRAP3,TRAPPC3"
TCGA.AA.A00F.01A	1	36603369	36605653	3	0.3791	SMALL-GAIN	FOCAL	1	TRAPPC3
TCGA.A6.3808.01A	1	36824300	37356494	50	0.5379	SMALL-GAIN	FOCAL	6	"CSF3R,GRIK3,LSM10,MRPS15,OSCP1,STK40"
TCGA.AG.4009.01A	1	36897347	37346184	39	0.4156	SMALL-GAIN	FOCAL	4	"CSF3R,GRIK3,MRPS15,OSCP1"
TCGA.AG.3611.01A	1	36909530	36937635	18	0.4254	SMALL-GAIN	FOCAL	3	"CSF3R,MRPS15,OSCP1"
TCGA.CK.5914.01A	1	36935246	37356494	22	0.6472	SMALL-GAIN	FOCAL	2	"CSF3R,GRIK3"
TCGA.AG.A00C.01A	1	37941131	38018196	15	0.4984	SMALL-GAIN	FOCAL	3	"MEAF6,SNIP1,ZC3H12A"
TCGA.AA.A010.01A	1	37980206	38192724	54	0.5201	SMALL-GAIN	FOCAL	8	"C1orf109,CDCA8,DNALI1,EPHA10,GNL2,MEAF6,RSPO1,SNIP1"
TCGA.AG.3909.01A	1	38078405	38082139	4	0.5743	SMALL-GAIN	FOCAL	1	RSPO1
TCGA.AA.A00N.01A	1	38078405	38095220	5	0.6087	SMALL-GAIN	FOCAL	1	RSPO1
TCGA.AG.3906.01A	1	38186399	38200882	6	0.3835	SMALL-GAIN	FOCAL	1	EPHA10
TCGA.AG.3611.01A	1	38322886	38455489	15	0.4708	SMALL-GAIN	FOCAL	3	"INPP5B,MTF1,SF3A3"
TCGA.AG.3611.01A	1	39330268	39500014	18	0.4151	SMALL-GAIN	FOCAL	5	"AKIRIN1,GJA9,MYCBP,NDUFS5,RHBDL2"
TCGA.AA.A010.01A	1	39747833	39776505	17	0.4208	SMALL-GAIN	FOCAL	1	MACF1
TCGA.AA.A00N.01A	1	39747833	39853311	51	0.6614	SMALL-GAIN	FOCAL	1	MACF1
TCGA.CK.5914.01A	1	39751249	39818689	32	0.4034	SMALL-GAIN	FOCAL	1	MACF1
TCGA.AA.A010.01A	1	39796934	39847607	21	0.5352	SMALL-GAIN	FOCAL	1	MACF1
TCGA.CK.5914.01A	1	39919327	39935157	11	0.4009	SMALL-GAIN	FOCAL	1	MACF1
TCGA.AG.3891.01A	1	40033372	40098267	11	0.6473	SMALL-GAIN	FOCAL	2	"HEYL,PABPC4"
TCGA.AA.A02K.01A	1	40128937	40150076	7	0.4896	SMALL-GAIN	FOCAL	2	"HPCAL4,NT5C1A"
TCGA.AA.A010.01A	1	40420930	40839746	73	0.5247	SMALL-GAIN	FOCAL	8	"CAP1,COL9A2,MFSD2A,PPT1,RLF,SMAP2,TMCO2,ZMPSTE24"
TCGA.AG.3909.01A	1	41204479	41236032	12	0.407	SMALL-GAIN	FOCAL	1	NFYC
TCGA.D5.6924	1	41346427	41387002	19	0.5628	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	1	41448936	41463016	8	0.6507	SMALL-GAIN	FOCAL	1	CTPS1
TCGA.AA.A01Q.01A	1	41493836	41578914	9	0.6512	SMALL-GAIN	FOCAL	1	SCMH1
TCGA.AA.A00N.01A	1	41617235	41651701	6	0.675	SMALL-GAIN	FOCAL	1	SCMH1
TCGA.CK.5914.01A	1	42041165	42880138	26	0.4711	SMALL-GAIN	FOCAL	5	"FOXJ3,GUCA2A,GUCA2B,HIVEP3,RIMKLA"
TCGA.AA.A00N.01A	1	43002104	43124858	18	0.3855	SMALL-GAIN	FOCAL	2	"CCDC30,PPIH"
TCGA.AG.3906.01A	1	43148680	43296071	30	0.5407	SMALL-GAIN	FOCAL	7	"C1orf50,CCDC23,CLDN19,ERMAP,LOC100129924,P3H1,YBX1"
TCGA.AG.A00C.01A	1	43217916	43240828	13	0.6311	SMALL-GAIN	FOCAL	2	"C1orf50,P3H1"
TCGA.AA.A00N.01A	1	43394561	43699903	35	0.5941	SMALL-GAIN	FOCAL	4	"CFAP57,EBNA1BP2,FAM183A,SLC2A1"
TCGA.AG.A00C.01A	1	43828581	43868797	14	0.6368	SMALL-GAIN	FOCAL	4	"CDC20,ELOVL1,MED8,SZT2"
TCGA.AA.A00N.01A	1	43869224	43900006	18	0.4694	SMALL-GAIN	FOCAL	1	SZT2
TCGA.AF.3914.01A	1	43890435	43896593	11	0.4889	SMALL-GAIN	FOCAL	1	SZT2
TCGA.AA.A010.01A	1	44086460	44137159	12	0.6388	SMALL-GAIN	FOCAL	2	"KDM4A,PTPRF"
TCGA.AA.A00N.01A	1	44257705	44386424	10	0.509	SMALL-GAIN	FOCAL	1	ST3GAL3
TCGA.AF.3914.01A	1	44685740	44713563	4	0.4607	SMALL-GAIN	FOCAL	2	"DMAP1,ERI3"
TCGA.AG.3906.01A	1	45079795	45232711	31	0.4223	SMALL-GAIN	FOCAL	4	"C1orf228,KIF2C,RNF220,TMEM53"
TCGA.AG.3891.01A	1	45205553	45232711	18	0.6042	SMALL-GAIN	FOCAL	1	KIF2C
TCGA.AA.A00N.01A	1	45499933	45525724	9	0.5124	SMALL-GAIN	FOCAL	1	ZSWIM5
TCGA.AG.A01W.01A	1	45858488	45861985	6	0.4538	SMALL-GAIN	FOCAL	1	TESK2
TCGA.AA.A02K.01A	1	46032193	46035496	6	0.4588	SMALL-GAIN	FOCAL	1	AKR1A1
TCGA.AA.A00F.01A	1	46179890	46211821	7	0.4099	SMALL-GAIN	FOCAL	1	IPP
TCGA.AA.A00N.01A	1	46269711	46493354	18	0.4995	SMALL-GAIN	FOCAL	1	MAST2
TCGA.AA.A010.01A	1	46347950	46493354	15	0.4052	SMALL-GAIN	FOCAL	1	MAST2
TCGA.AA.A01Q.01A	1	46489417	46501098	8	0.6076	SMALL-GAIN	FOCAL	1	MAST2
TCGA.AA.A01Q.01A	1	46806444	46867716	7	0.4907	SMALL-GAIN	FOCAL	2	"FAAH,NSUN4"
TCGA.AA.A00N.01A	1	46806444	46977725	24	0.4293	SMALL-GAIN	FOCAL	3	"DMBX1,FAAH,NSUN4"
TCGA.AG.3909.01A	1	47264732	47489453	22	0.6136	SMALL-GAIN	FOCAL	3	"CYP4A11,CYP4B1,CYP4X1"
TCGA.AG.3909.01A	1	47603120	47614267	9	0.5985	SMALL-GAIN	FOCAL	1	CYP4A22
TCGA.AA.A010.01A	1	48688367	48771428	16	0.4973	SMALL-GAIN	FOCAL	2	"SLC5A9,SPATA6"
TCGA.AG.3909.01A	1	48937588	51005247	28	0.4688	SMALL-GAIN	FOCAL	6	"AGBL4,BEND5,DMRTA2,ELAVL4,FAF1,SPATA6"
TCGA.DM.A1HB	1	48965483	49292931	158	0.4604	SMALL-GAIN	FOCAL	2	"AGBL4,BEND5"
TCGA.AG.3909.01A	1	51756134	51776881	10	0.595	SMALL-GAIN	FOCAL	1	TTC39A
TCGA.AA.A010.01A	1	52343919	52991197	109	0.5616	SMALL-GAIN	FOCAL	10	"BTF3L4,CC2D1B,KTI12,NRD1,ORC1,PRPF38A,RAB3B,TXNDC12,ZCCHC11,ZFYVE9"
TCGA.AA.A00N.01A	1	52703143	52803407	14	0.6778	SMALL-GAIN	FOCAL	1	ZFYVE9
TCGA.AA.A00N.01A	1	52859107	52981478	41	0.565	SMALL-GAIN	FOCAL	3	"ORC1,PRPF38A,ZCCHC11"
TCGA.CK.5914.01A	1	52879499	52896663	7	0.6555	SMALL-GAIN	FOCAL	2	"PRPF38A,ZCCHC11"
TCGA.AA.A00N.01A	1	53236675	53282177	10	0.4529	SMALL-GAIN	FOCAL	1	ZYG11B
TCGA.AG.A01W.01A	1	53314076	53331674	13	0.4466	SMALL-GAIN	FOCAL	1	ZYG11A
TCGA.AA.A00N.01A	1	53358407	53387187	10	0.4598	SMALL-GAIN	FOCAL	2	"ECHDC2,ZYG11A"
TCGA.AA.A00N.01A	1	53420348	53504540	11	0.4245	SMALL-GAIN	FOCAL	1	SCP2
TCGA.CK.5914.01A	1	53703978	53729844	11	0.4523	SMALL-GAIN	FOCAL	2	"LRP8,MAGOH"
TCGA.AG.3909.01A	1	54518641	54644784	11	0.4601	SMALL-GAIN	FOCAL	4	"CDCP2,CYB5RL,TCEANC2,TMEM59"
TCGA.CK.5914.01A	1	54554219	54665905	13	0.4161	SMALL-GAIN	FOCAL	4	"CDCP2,CYB5RL,MRPL37,TCEANC2"
TCGA.AG.4009.01A	1	55058148	55207052	53	0.3813	SMALL-GAIN	FOCAL	4	"ACOT11,FAM151A,MROH7,TTC4"
TCGA.AG.A00C.01A	1	55168254	55280540	25	0.4177	SMALL-GAIN	FOCAL	5	"C1orf177,MROH7,PARS2,TTC22,TTC4"
TCGA.AA.3850	1	55193871	55529870	157	0.41765	SMALL-GAIN	FOCAL	8	"BSND,C1orf177,DHCR24,PARS2,PCSK9,TMEM61,TTC22,TTC4"
TCGA.CK.5914.01A	1	55280540	55340738	9	0.5452	SMALL-GAIN	FOCAL	2	"C1orf177,DHCR24"
TCGA.AA.A02K.01A	1	55512150	55518286	3	0.4227	SMALL-GAIN	FOCAL	1	PCSK9
TCGA.CK.5914.01A	1	55539439	55567210	22	0.5432	SMALL-GAIN	FOCAL	1	USP24
TCGA.AA.A00N.01A	1	55555252	57224306	78	0.5725	SMALL-GAIN	FOCAL	4	"C1orf168,PPAP2B,PRKAA2,USP24"
TCGA.AA.A00N.01A	1	57491599	60280740	57	0.4971	SMALL-GAIN	FOCAL	7	"DAB1,FGGY,HOOK1,JUN,MYSM1,OMA1,TACSTD2"
TCGA.AG.A01W.01A	1	58744284	58777009	6	0.4402	SMALL-GAIN	FOCAL	0	None
TCGA.CK.4948.01B	1	60302520	60325838	9	0.5295	SMALL-GAIN	FOCAL	1	HOOK1
TCGA.AA.A010.01A	1	60328406	60392162	16	0.4611	SMALL-GAIN	FOCAL	2	"CYP2J2,HOOK1"
TCGA.AA.A010.01A	1	60491035	61331014	8	0.6342	SMALL-GAIN	FOCAL	1	C1orf87
TCGA.AA.A00N.01A	1	61743157	62747129	71	0.6437	SMALL-GAIN	FOCAL	5	"INADL,KANK4,L1TD1,NFIA,TM2D1"
TCGA.AA.3941	1	62119808	63028197	318	0.4517	SMALL-GAIN	FOCAL	6	"DOCK7,INADL,KANK4,L1TD1,TM2D1,USP1"
TCGA.AG.A01W.01A	1	62824730	62842873	8	0.527	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	62921027	64643059	122	0.4942	SMALL-GAIN	FOCAL	9	"ALG6,ANGPTL3,ATG4C,DOCK7,EFCAB7,FOXD3,ITGB3BP,PGM1,ROR1"
TCGA.CK.4948.01B	1	63063188	63070262	7	0.4978	SMALL-GAIN	FOCAL	2	"ANGPTL3,DOCK7"
TCGA.AA.3941	1	63751903	63871757	32	0.4311	SMALL-GAIN	FOCAL	2	"ALG6,FOXD3"
TCGA.AZ.4684.01A	1	63788729	63919999	19	0.4295	SMALL-GAIN	FOCAL	3	"ALG6,FOXD3,ITGB3BP"
TCGA.AG.3909.01A	1	64089100	64643059	19	0.427	SMALL-GAIN	FOCAL	2	"PGM1,ROR1"
TCGA.AG.A00C.01A	1	64669677	64698196	7	0.4084	SMALL-GAIN	FOCAL	1	UBE2U
TCGA.AA.A00N.01A	1	64698196	65871536	87	0.5694	SMALL-GAIN	FOCAL	6	"AK4,CACHD1,DNAJC6,JAK1,RAVER2,UBE2U"
TCGA.AG.A00C.01A	1	65874272	65897469	6	0.4096	SMALL-GAIN	FOCAL	3	"DNAJC6,LEPR,LEPROT"
TCGA.AA.A00N.01A	1	67241925	67390659	21	0.5806	SMALL-GAIN	FOCAL	4	"INSL5,MIER1,TCTEX1D1,WDR78"
TCGA.AG.A00C.01A	1	67390659	67411786	5	0.4554	SMALL-GAIN	FOCAL	1	MIER1
TCGA.AA.A00N.01A	1	67423710	67487150	15	0.5624	SMALL-GAIN	FOCAL	2	"MIER1,SLC35D1"
TCGA.AG.A00C.01A	1	67507864	67518446	6	0.4646	SMALL-GAIN	FOCAL	1	SLC35D1
TCGA.AA.A00N.01A	1	67519447	67861183	33	0.4386	SMALL-GAIN	FOCAL	4	"C1orf141,IL12RB2,IL23R,SLC35D1"
TCGA.AA.3941	1	67564280	68109612	216	0.4143	SMALL-GAIN	FOCAL	4	"C1orf141,IL12RB2,IL23R,SERBP1"
TCGA.AG.A008.01A	1	68943418	68960084	10	0.4232	SMALL-GAIN	FOCAL	1	DEPDC1
TCGA.AA.A00N.01A	1	68962561	70484375	18	0.6377	SMALL-GAIN	FOCAL	2	"DEPDC1,LRRC7"
TCGA.AA.A00N.01A	1	70555368	70650421	14	0.5056	SMALL-GAIN	FOCAL	2	"LRRC40,LRRC7"
TCGA.AA.A00N.01A	1	70728353	71512412	37	0.5261	SMALL-GAIN	FOCAL	4	"ANKRD13C,CTH,HHLA3,PTGER3"
TCGA.AA.3850	1	70758679	70954259	42	0.46335	SMALL-GAIN	FOCAL	3	"ANKRD13C,CTH,HHLA3"
TCGA.DY.A1DC	1	71929967	72049672	40	0.4865	SMALL-GAIN	FOCAL	1	NEGR1
TCGA.CK.5914.01A	1	74737253	74905127	13	0.4485	SMALL-GAIN	FOCAL	2	"FPGT-TNNI3K,TNNI3K"
TCGA.AA.A00N.01A	1	75622551	76190391	24	0.5881	SMALL-GAIN	FOCAL	3	"ACADM,LHX8,SLC44A5"
TCGA.AG.3882	1	75834453	77544742	656	0.6661	SMALL-GAIN	FOCAL	7	"ACADM,ASB17,MSH4,RABGGTB,SLC44A5,ST6GALNAC3,ST6GALNAC5"
TCGA.AA.A00N.01A	1	76211441	78245285	106	0.389	SMALL-GAIN	FOCAL	10	"ACADM,AK5,ASB17,MSH4,PIGK,RABGGTB,ST6GALNAC3,ST6GALNAC5,USP33,ZZZ3"
TCGA.AG.3906.01A	1	77951927	78001493	4	0.6592	SMALL-GAIN	FOCAL	1	AK5
TCGA.AG.A008.01A	1	78207016	78340482	16	0.3839	SMALL-GAIN	FOCAL	2	"FAM73A,USP33"
TCGA.AG.3591	1	78289044	80313190	586	0.4891	SMALL-GAIN	FOCAL	9	"ADGRL4,DNAJB4,FAM73A,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PTGFR"
TCGA.AG.3891.01A	1	78325671	78340482	6	0.6179	SMALL-GAIN	FOCAL	1	FAM73A
TCGA.CK.5914.01A	1	79002062	84609994	78	0.4432	SMALL-GAIN	FOCAL	7	"ADGRL2,ADGRL4,IFI44,IFI44L,PRKACB,PTGFR,TTLL7"
TCGA.DM.A1DB	1	81796829	81984157	83	0.4095	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	1	82455251	84543930	22	0.5507	SMALL-GAIN	FOCAL	3	"ADGRL2,PRKACB,TTLL7"
TCGA.AZ.4682	1	83151733	83538361	151	0.4563	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A28H	1	84088244	84628654	210	0.4277	SMALL-GAIN	FOCAL	2	"PRKACB,TTLL7"
TCGA.AG.A01W.01A	1	84894589	84904347	5	0.3793	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	1	84944916	85036227	26	0.4304	SMALL-GAIN	FOCAL	3	"CTBS,GNG5,RPF1"
TCGA.AA.A00N.01A	1	86241273	86436950	28	0.4394	SMALL-GAIN	FOCAL	1	COL24A1
TCGA.F4.6459	1	86727750	86876230	25	0.4189	SMALL-GAIN	FOCAL	1	ODF2L
TCGA.AA.A00N.01A	1	89150191	89430465	34	0.587	SMALL-GAIN	FOCAL	3	"CCBL2,GTF2B,PKN2"
TCGA.AA.A00N.01A	1	89477383	89528709	16	0.6045	SMALL-GAIN	FOCAL	2	"GBP1,GBP3"
TCGA.AG.3611.01A	1	89726338	90492862	41	0.4209	SMALL-GAIN	FOCAL	6	"GBP5,GBP6,LRRC8B,LRRC8C,LRRC8D,ZNF326"
TCGA.CK.5914.01A	1	89834059	90049903	14	0.4956	SMALL-GAIN	FOCAL	2	"GBP6,LRRC8B"
TCGA.DM.A28H	1	91193048	92041501	259	0.4291	SMALL-GAIN	FOCAL	3	"CDC7,HFM1,ZNF644"
TCGA.AA.A010.01A	1	91382307	91733274	10	0.5187	SMALL-GAIN	FOCAL	2	"HFM1,ZNF644"
TCGA.AG.A00C.01A	1	91859612	91989589	13	0.466	SMALL-GAIN	FOCAL	2	"CDC7,HFM1"
TCGA.AG.3909.01A	1	92149259	92262824	15	0.5172	SMALL-GAIN	FOCAL	1	TGFBR3
TCGA.CK.5914.01A	1	92149259	92326962	16	0.574	SMALL-GAIN	FOCAL	1	TGFBR3
TCGA.AA.A00N.01A	1	92149259	92459593	29	0.5866	SMALL-GAIN	FOCAL	2	"BRDT,TGFBR3"
TCGA.AA.A010.01A	1	92149259	92467579	30	0.3833	SMALL-GAIN	FOCAL	2	"BRDT,TGFBR3"
TCGA.AG.3906.01A	1	92498007	92518015	5	0.495	SMALL-GAIN	FOCAL	1	EPHX4
TCGA.AA.A00N.01A	1	92528565	92736985	35	0.5033	SMALL-GAIN	FOCAL	6	"BTBD8,C1orf146,EPHX4,GLMN,KIAA1107,SETSIP"
TCGA.AA.A010.01A	1	93029166	94107778	106	0.4089	SMALL-GAIN	FOCAL	9	"BCAR3,CCDC18,DR1,EVI5,FAM69A,FNBP1L,MTF2,RPL5,TMED5"
TCGA.CK.5914.01A	1	93575770	93602209	11	0.4169	SMALL-GAIN	FOCAL	1	MTF2
TCGA.AA.A00N.01A	1	93913754	94344579	37	0.6063	SMALL-GAIN	FOCAL	3	"BCAR3,DNTTIP2,FNBP1L"
TCGA.CK.5914.01A	1	93988859	94312331	26	0.6671	SMALL-GAIN	FOCAL	2	"BCAR3,FNBP1L"
TCGA.AA.3941	1	94026860	94330614	100	0.4119	SMALL-GAIN	FOCAL	1	BCAR3
TCGA.AA.3509.01A	1	94335224	94337579	3	0.3788	SMALL-GAIN	FOCAL	1	DNTTIP2
TCGA.AA.3941	1	94343022	94610394	148	0.4518	SMALL-GAIN	FOCAL	3	"ABCA4,DNTTIP2,GCLM"
TCGA.CK.5914.01A	1	94458696	94486767	15	0.5935	SMALL-GAIN	FOCAL	1	ABCA4
TCGA.AG.3909.01A	1	94458696	94645231	53	0.4242	SMALL-GAIN	FOCAL	2	"ABCA4,ARHGAP29"
TCGA.CK.5914.01A	1	94930284	94982549	16	0.578	SMALL-GAIN	FOCAL	1	ABCD3
TCGA.AA.3941	1	95815862	95829830	10	0.4212	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	1	97270294	100185038	66	0.435	SMALL-GAIN	FOCAL	7	"DPYD,FRRS1,LPPR4,LPPR5,PALMD,PTBP2,SNX7"
TCGA.AG.A00C.01A	1	100316538	100341962	11	0.4592	SMALL-GAIN	FOCAL	1	AGL
TCGA.AA.A010.01A	1	103467416	103573602	22	0.4373	SMALL-GAIN	FOCAL	1	COL11A1
TCGA.AZ.4684.01A	1	109294847	109321857	7	0.5456	SMALL-GAIN	FOCAL	1	STXBP3
TCGA.AA.A010.01A	1	109391339	109553536	38	0.5082	SMALL-GAIN	FOCAL	4	"AKNAD1,CLCC1,GPSM2,WDR47"
TCGA.AG.3906.01A	1	109716068	109813030	46	0.5732	SMALL-GAIN	FOCAL	3	"CELSR2,KIAA1324,SARS"
TCGA.AG.A015.01A	1	109793065	109814853	20	0.441	SMALL-GAIN	FOCAL	1	CELSR2
TCGA.AA.3939.01A	1	109814853	109816556	4	0.6568	SMALL-GAIN	FOCAL	1	CELSR2
TCGA.AG.3909.01A	1	109837701	109869566	13	0.5479	SMALL-GAIN	FOCAL	2	"MYBPHL,SORT1"
TCGA.AA.A00N.01A	1	109837701	109897941	22	0.5792	SMALL-GAIN	FOCAL	2	"MYBPHL,SORT1"
TCGA.CK.5914.01A	1	109837701	109897941	22	0.4388	SMALL-GAIN	FOCAL	2	"MYBPHL,SORT1"
TCGA.AA.A010.01A	1	109838807	109912093	23	0.4086	SMALL-GAIN	FOCAL	2	"MYBPHL,SORT1"
TCGA.AG.A00C.01A	1	110018163	110050476	18	0.4775	SMALL-GAIN	FOCAL	4	"AMIGO1,ATXN7L2,CYB561D1,SYPL2"
TCGA.AA.A00N.01A	1	110085615	110141462	9	0.6078	SMALL-GAIN	FOCAL	2	"GNAI3,GPR61"
TCGA.AF.3914.01A	1	110085615	110304078	73	0.427	SMALL-GAIN	FOCAL	10	"AMPD2,EPS8L3,GNAI3,GNAT2,GPR61,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5"
TCGA.AA.A010.01A	1	110162819	110304078	57	0.5002	SMALL-GAIN	FOCAL	7	"AMPD2,EPS8L3,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5"
TCGA.AA.3939.01A	1	110215781	110255178	12	0.4437	SMALL-GAIN	FOCAL	3	"GSTM1,GSTM2,GSTM5"
TCGA.AG.3611.01A	1	110230415	110232842	5	0.5999	SMALL-GAIN	FOCAL	1	GSTM1
TCGA.AG.A01W.01A	1	110353133	110359524	6	0.382	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	1	110586214	110768565	28	0.4313	SMALL-GAIN	FOCAL	5	"ALX3,KCNC4,SLC6A17,STRIP1,UBL4B"
TCGA.AG.3909.01A	1	110950208	111061043	7	0.3809	SMALL-GAIN	FOCAL	3	"KCNA10,LAMTOR5,PROK1"
TCGA.AG.3906.01A	1	111061043	111146456	3	0.6477	SMALL-GAIN	FOCAL	2	"KCNA10,KCNA2"
TCGA.AA.A010.01A	1	111215697	111506180	14	0.4474	SMALL-GAIN	FOCAL	3	"CD53,KCNA3,LRIF1"
TCGA.AZ.4684.01A	1	111660765	111726763	14	0.5626	SMALL-GAIN	FOCAL	2	"CEPT1,DRAM2"
TCGA.AA.A010.01A	1	111983813	112233940	31	0.5967	SMALL-GAIN	FOCAL	6	"ADORA3,ATP5F1,C1orf162,RAP1A,TMIGD3,WDR77"
TCGA.AA.A010.01A	1	112269560	112303093	7	0.5019	SMALL-GAIN	FOCAL	2	"DDX20,FAM212B"
TCGA.AG.3906.01A	1	112323264	112525009	4	0.4163	SMALL-GAIN	FOCAL	1	KCND3
TCGA.AA.3509.01A	1	113161504	114092132	64	0.514	SMALL-GAIN	FOCAL	9	"CAPZA1,FAM19A3,LRIG2,MAGI3,MOV10,PPM1J,RHOC,SLC16A1,ST7L"
TCGA.AG.A008.01A	1	113162410	113235361	16	0.4839	SMALL-GAIN	FOCAL	2	"CAPZA1,MOV10"
TCGA.AA.3930.01A	1	113234240	113237028	4	0.5883	SMALL-GAIN	FOCAL	1	MOV10
TCGA.AG.3906.01A	1	113236610	113237990	3	0.6628	SMALL-GAIN	FOCAL	1	MOV10
TCGA.AG.3906.01A	1	113253841	113615992	14	0.5028	SMALL-GAIN	FOCAL	4	"FAM19A3,LRIG2,PPM1J,SLC16A1"
TCGA.AA.A010.01A	1	113638806	114450584	95	0.4143	SMALL-GAIN	FOCAL	8	"AP4B1,BCL2L15,DCLRE1B,LRIG2,MAGI3,PHTF1,PTPN22,RSBN1"
TCGA.AA.A00N.01A	1	114137045	114255862	29	0.6115	SMALL-GAIN	FOCAL	2	"MAGI3,PHTF1"
TCGA.AA.A010.01A	1	114500649	114952757	28	0.6666	SMALL-GAIN	FOCAL	4	"HIPK1,OLFML3,SYT6,TRIM33"
TCGA.AA.A010.01A	1	115119248	115455637	78	0.5266	SMALL-GAIN	FOCAL	7	"AMPD1,BCAS2,CSDE1,DENND2C,NRAS,SIKE1,SYCP1"
TCGA.AA.A00N.01A	1	115323017	116382057	60	0.449	SMALL-GAIN	FOCAL	8	"CASQ2,NGF,NHLH2,SIKE1,SYCP1,TSHB,TSPAN2,VANGL1"
TCGA.CK.5914.01A	1	115520111	116382057	34	0.4088	SMALL-GAIN	FOCAL	7	"CASQ2,NGF,NHLH2,SYCP1,TSHB,TSPAN2,VANGL1"
TCGA.AG.3891.01A	1	116275471	116287400	4	0.4866	SMALL-GAIN	FOCAL	1	CASQ2
TCGA.AF.6136	1	116357353	117423338	376	0.4978	SMALL-GAIN	FOCAL	8	"ATP1A1,C1orf137,CD2,CD58,IGSF3,MAB21L3,NHLH2,SLC22A15"
TCGA.AA.A00N.01A	1	116519205	116916050	19	0.6263	SMALL-GAIN	FOCAL	3	"ATP1A1,MAB21L3,SLC22A15"
TCGA.AA.A010.01A	1	117119902	117910805	76	0.409	SMALL-GAIN	FOCAL	9	"C1orf137,CD101,CD2,IGSF3,MAN1A2,PTGFRN,TRIM45,TTF2,VTCN1"
TCGA.AG.3909.01A	1	117121964	117158673	9	0.5886	SMALL-GAIN	FOCAL	1	IGSF3
TCGA.AA.3930.01A	1	117248547	117302987	5	0.4841	SMALL-GAIN	FOCAL	2	"C1orf137,CD2"
TCGA.AA.3509.01A	1	117307059	117910805	57	0.5214	SMALL-GAIN	FOCAL	7	"CD101,CD2,MAN1A2,PTGFRN,TRIM45,TTF2,VTCN1"
TCGA.AG.A01W.01A	1	117456413	117464809	6	0.6434	SMALL-GAIN	FOCAL	1	PTGFRN
TCGA.AG.3909.01A	1	117527301	117576430	11	0.4822	SMALL-GAIN	FOCAL	2	"CD101,PTGFRN"
TCGA.DM.A28M.01A	1	117910805	118642178	99	0.5587	SMALL-GAIN	FOCAL	5	"FAM46C,GDAP2,MAN1A2,SPAG17,WDR3"
TCGA.AG.3906.01A	1	117957287	117984824	3	0.5179	SMALL-GAIN	FOCAL	1	MAN1A2
TCGA.EI.6509	1	118288902	118439994	37	0.4922	SMALL-GAIN	FOCAL	1	GDAP2
TCGA.AA.A00N.01A	1	118530701	118693890	35	0.6453	SMALL-GAIN	FOCAL	1	SPAG17
TCGA.AA.A010.01A	1	118583321	118635732	13	0.531	SMALL-GAIN	FOCAL	1	SPAG17
TCGA.CK.5914.01A	1	118693890	119530186	12	0.677	SMALL-GAIN	FOCAL	2	"SPAG17,TBX15"
TCGA.G5.6233	1	118842088	119084490	68	0.5516	SMALL-GAIN	FOCAL	0	None
TCGA.D5.6536	1	119240452	119404029	36	0.5137	SMALL-GAIN	FOCAL	0	None
TCGA.D5.6536	1	119491732	119759689	66	0.5925	SMALL-GAIN	FOCAL	2	"TBX15,WARS2"
TCGA.AA.A010.01A	1	119530186	119683121	7	0.5763	SMALL-GAIN	FOCAL	2	"TBX15,WARS2"
TCGA.D5.6536	1	119899034	120209563	134	0.389	SMALL-GAIN	FOCAL	4	"HAO2,HSD3B1,HSD3B2,ZNF697"
TCGA.CK.5914.01A	1	120277871	120385004	28	0.5497	SMALL-GAIN	FOCAL	4	"HMGCS2,NBPF7,PHGDH,REG4"
TCGA.D5.6536	1	120359201	121172839	48	0.6029	SMALL-GAIN	FOCAL	5	"ADAM30,FAM72B,FCGR1B,NBPF7,NOTCH2"
TCGA.AA.A02E.01A	1	120471608	120547923	21	0.4439	SMALL-GAIN	FOCAL	1	NOTCH2
TCGA.AA.3967.01A	1	120839786	144814632	17	0.6227	SMALL-GAIN	FOCAL	10	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AG.3882	1	121168847	121291079	14	0.4895	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3980.01A	1	143767592	144828561	13	0.4034	SMALL-GAIN	FOCAL	8	"FAM72C,FAM72D,NBPF20,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AG.A01W.01A	1	144270156	144290246	12	0.5334	SMALL-GAIN	FOCAL	1	NBPF20
TCGA.AG.A01W.01A	1	144472484	144480714	5	0.6022	SMALL-GAIN	FOCAL	1	NBPF20
TCGA.AG.A015.01A	1	144814632	144878985	22	0.449	SMALL-GAIN	FOCAL	4	"NBPF20,NBPF8,NBPF9,PDE4DIP"
TCGA.AG.3909.01A	1	144825371	144903050	26	0.4756	SMALL-GAIN	FOCAL	4	"NBPF20,NBPF8,NBPF9,PDE4DIP"
TCGA.CK.5914.01A	1	144906394	144915407	5	0.5126	SMALL-GAIN	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.CK.5914.01A	1	145075602	145415281	14	0.6748	SMALL-GAIN	FOCAL	7	"HFE2,NBPF10,NBPF20,NBPF9,NOTCH2NL,PDE4DIP,SEC22B"
TCGA.AA.3980.01A	1	145112323	145298257	8	0.4108	SMALL-GAIN	FOCAL	5	"NBPF10,NBPF20,NBPF9,NOTCH2NL,SEC22B"
TCGA.AG.3909.01A	1	145248799	145311794	7	0.634	SMALL-GAIN	FOCAL	4	"NBPF10,NBPF20,NBPF9,NOTCH2NL"
TCGA.AA.A00N.01A	1	145510719	145537117	24	0.6055	SMALL-GAIN	FOCAL	5	"ITGA10,NBPF10,NBPF20,PEX11B,RBM8A"
TCGA.AG.A02G.01A	1	145534847	145539667	8	0.4249	SMALL-GAIN	FOCAL	3	"ITGA10,NBPF10,NBPF20"
TCGA.AG.3906.01A	1	145650412	145688062	7	0.5672	SMALL-GAIN	FOCAL	3	"NBPF10,NBPF20,RNF115"
TCGA.AA.A00N.01A	1	145698739	146465996	20	0.3792	SMALL-GAIN	FOCAL	7	"CD160,GPR89A,NBPF10,NBPF11,NBPF12,NBPF20,PDZK1"
TCGA.AG.3611.01A	1	145747017	145804236	9	0.6382	SMALL-GAIN	FOCAL	4	"GPR89A,NBPF10,NBPF20,PDZK1"
TCGA.AA.A00Q.01A	1	145748351	145762072	6	0.5631	SMALL-GAIN	FOCAL	3	"NBPF10,NBPF20,PDZK1"
TCGA.AA.A00N.01A	1	149905248	149949306	18	0.5892	SMALL-GAIN	FOCAL	2	"MTMR11,OTUD7B"
TCGA.CK.5914.01A	1	149905248	149949306	18	0.5336	SMALL-GAIN	FOCAL	2	"MTMR11,OTUD7B"
TCGA.AA.A00Q.01A	1	149915704	149942949	5	0.6752	SMALL-GAIN	FOCAL	1	OTUD7B
TCGA.AG.A01W.01A	1	150001438	150020532	16	0.5057	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3891.01A	1	150116844	150233819	16	0.4454	SMALL-GAIN	FOCAL	4	"ANP32E,CA14,PLEKHO1,VPS45"
TCGA.AA.3980.01A	1	150234910	150240063	9	0.588	SMALL-GAIN	FOCAL	2	"APH1A,CA14"
TCGA.AG.A01Y	1	150287883	150466924	29	0.6537	SMALL-GAIN	FOCAL	3	"PRPF3,RPRD2,TARS2"
TCGA.AG.A01W.01A	1	150460014	150542634	5	0.5958	SMALL-GAIN	FOCAL	3	"ADAMTSL4,ECM1,TARS2"
TCGA.AG.A015.01A	1	150471660	150483324	8	0.4024	SMALL-GAIN	FOCAL	2	"ECM1,TARS2"
TCGA.AG.A01Y	1	150545623	150622695	12	0.6598	SMALL-GAIN	FOCAL	3	"ENSA,GOLPH3L,MCL1"
TCGA.AA.A010.01A	1	150550708	150636061	11	0.6545	SMALL-GAIN	FOCAL	3	"ENSA,GOLPH3L,MCL1"
TCGA.AA.A00F.01A	1	150689577	150771604	11	0.5271	SMALL-GAIN	FOCAL	3	"CTSK,CTSS,HORMAD1"
TCGA.AG.A025.01A	1	150790364	150804754	7	0.6404	SMALL-GAIN	FOCAL	1	ARNT
TCGA.AA.A00F.01A	1	150814851	150830776	4	0.6157	SMALL-GAIN	FOCAL	1	ARNT
TCGA.AG.3891.01A	1	150830776	150923794	16	0.5051	SMALL-GAIN	FOCAL	2	"ARNT,SETDB1"
TCGA.AG.3906.01A	1	150899182	150923794	15	0.4229	SMALL-GAIN	FOCAL	1	SETDB1
TCGA.AG.3891.01A	1	150955529	151090415	49	0.5412	SMALL-GAIN	FOCAL	8	"ANXA9,BNIPL,C1orf56,CDC42SE1,FAM63A,GABPB2,MLLT11,PRUNE"
TCGA.AA.A010.01A	1	151015791	151039664	10	0.6471	SMALL-GAIN	FOCAL	4	"BNIPL,C1orf56,CDC42SE1,MLLT11"
TCGA.AG.3909.01A	1	151060624	151090415	8	0.4273	SMALL-GAIN	FOCAL	1	GABPB2
TCGA.AG.A016.01A	1	151106818	151110155	7	0.4555	SMALL-GAIN	FOCAL	1	SEMA6C
TCGA.AG.3891.01A	1	151141410	151144690	7	0.6106	SMALL-GAIN	FOCAL	3	"SCNM1,TMOD4,TNFAIP8L2-SCNM1"
TCGA.AG.3909.01A	1	151158226	151208993	10	0.4759	SMALL-GAIN	FOCAL	2	"PIP5K1A,VPS72"
TCGA.CK.5914.01A	1	151171429	151214568	13	0.5513	SMALL-GAIN	FOCAL	1	PIP5K1A
TCGA.AG.3891.01A	1	151196650	151214897	12	0.6749	SMALL-GAIN	FOCAL	1	PIP5K1A
TCGA.AA.A01Q.01A	1	151314458	151414509	39	0.4225	SMALL-GAIN	FOCAL	4	"POGZ,PSMB4,RFX5,SELENBP1"
TCGA.AG.3909.01A	1	151336970	151372012	10	0.5962	SMALL-GAIN	FOCAL	1	SELENBP1
TCGA.AA.A01Q.01A	1	151534504	151611310	14	0.446	SMALL-GAIN	FOCAL	2	"SNX27,TUFT1"
TCGA.AA.A010.01A	1	151584626	151701191	27	0.517	SMALL-GAIN	FOCAL	3	"CELF3,RIIAD1,SNX27"
TCGA.AA.A00N.01A	1	151677469	151689155	12	0.5208	SMALL-GAIN	FOCAL	1	CELF3
TCGA.AG.A00C.01A	1	151688315	151755347	24	0.6125	SMALL-GAIN	FOCAL	5	"CELF3,MRPL9,OAZ3,RIIAD1,TDRKH"
TCGA.AG.3906.01A	1	151732474	151748240	17	0.6366	SMALL-GAIN	FOCAL	3	"MRPL9,OAZ3,TDRKH"
TCGA.AA.A02H.01A	1	152079829	152552102	43	0.6704	SMALL-GAIN	FOCAL	10	"CRCT1,CRNN,FLG,FLG2,HRNR,LCE3D,LCE3E,LCE5A,RPTN,TCHH"
TCGA.AA.A01C.01A	1	152185515	152384542	33	0.4405	SMALL-GAIN	FOCAL	4	"CRNN,FLG,FLG2,HRNR"
TCGA.AA.A017.01A	1	152186575	152275158	7	0.4789	SMALL-GAIN	FOCAL	2	"FLG,HRNR"
TCGA.AG.A01W.01A	1	153286258	153324145	19	0.5771	SMALL-GAIN	FOCAL	1	PGLYRP4
TCGA.AG.A00C.01A	1	153507141	153516198	6	0.4085	SMALL-GAIN	FOCAL	3	"S100A4,S100A5,S100A6"
TCGA.AG.A01W.01A	1	153518785	153536532	14	0.5782	SMALL-GAIN	FOCAL	2	"S100A2,S100A3"
TCGA.AG.A01W.01A	1	153554295	153566772	11	0.4853	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00F.01A	1	153631556	153653604	18	0.4713	SMALL-GAIN	FOCAL	3	"ILF2,NPR1,SNAPIN"
TCGA.AG.A00C.01A	1	154177998	154201039	11	0.4024	SMALL-GAIN	FOCAL	3	"C1orf189,C1orf43,UBAP2L"
TCGA.CK.5914.01A	1	154207015	154245130	26	0.4312	SMALL-GAIN	FOCAL	2	"HAX1,UBAP2L"
TCGA.AA.A00N.01A	1	154218652	154246226	22	0.5045	SMALL-GAIN	FOCAL	2	"HAX1,UBAP2L"
TCGA.AG.A00C.01A	1	154296776	154313321	13	0.5631	SMALL-GAIN	FOCAL	2	"AQP10,ATP8B2"
TCGA.AG.A00C.01A	1	154471550	154574128	42	0.4954	SMALL-GAIN	FOCAL	5	"ADAR,CHRNB2,SHE,TDRD10,UBE2Q1"
TCGA.AA.A010.01A	1	154580376	154920412	21	0.4754	SMALL-GAIN	FOCAL	4	"ADAR,KCNN3,PBXIP1,PMVK"
TCGA.AG.A01W.01A	1	154821252	154831698	7	0.5697	SMALL-GAIN	FOCAL	1	KCNN3
TCGA.AA.3939.01A	1	154832081	154956203	30	0.4283	SMALL-GAIN	FOCAL	7	"CKS1B,FLAD1,KCNN3,PBXIP1,PMVK,PYGO2,SHC1"
TCGA.AG.A016.01A	1	155025875	155034684	12	0.5672	SMALL-GAIN	FOCAL	1	ADAM15
TCGA.AG.A01W.01A	1	155078461	155100710	16	0.4821	SMALL-GAIN	FOCAL	1	EFNA1
TCGA.AG.A008.01A	1	155112410	155182981	37	0.437	SMALL-GAIN	FOCAL	6	"DPM3,KRTCAP2,MTX1,MUC1,THBS3,TRIM46"
TCGA.AG.A01W.01A	1	155142692	155168281	21	0.5008	SMALL-GAIN	FOCAL	4	"KRTCAP2,MUC1,THBS3,TRIM46"
TCGA.AA.A00N.01A	1	155324260	155490900	15	0.4523	SMALL-GAIN	FOCAL	1	ASH1L
TCGA.AA.A010.01A	1	155340278	155640070	22	0.6703	SMALL-GAIN	FOCAL	3	"ASH1L,MSTO1,YY1AP1"
TCGA.AA.3509.01A	1	155447670	155649005	19	0.5942	SMALL-GAIN	FOCAL	3	"ASH1L,MSTO1,YY1AP1"
TCGA.AA.A02K.01A	1	155650133	155691278	6	0.5558	SMALL-GAIN	FOCAL	2	"DAP3,YY1AP1"
TCGA.CK.5914.01A	1	155731932	155753730	10	0.5889	SMALL-GAIN	FOCAL	1	GON4L
TCGA.AG.4009.01A	1	155911453	155938895	20	0.5993	SMALL-GAIN	FOCAL	2	"ARHGEF2,RXFP4"
TCGA.AG.3906.01A	1	155928068	156028019	28	0.4138	SMALL-GAIN	FOCAL	4	"ARHGEF2,LAMTOR2,SSR2,UBQLN4"
TCGA.AA.A00N.01A	1	155935067	156013778	18	0.3786	SMALL-GAIN	FOCAL	3	"ARHGEF2,SSR2,UBQLN4"
TCGA.AG.A01W.01A	1	156003223	156056340	18	0.6054	SMALL-GAIN	FOCAL	5	"LAMTOR2,LMNA,MEX3A,RAB25,UBQLN4"
TCGA.AF.3914.01A	1	156084683	156124319	13	0.5577	SMALL-GAIN	FOCAL	2	"LMNA,SEMA4A"
TCGA.AF.3914.01A	1	156215318	156280689	36	0.466	SMALL-GAIN	FOCAL	6	"CCT3,GLMP,PAQR6,SMG5,TMEM79,VHLL"
TCGA.CK.5914.01A	1	156228754	156236282	6	0.4755	SMALL-GAIN	FOCAL	1	SMG5
TCGA.AA.A00F.01A	1	156280310	156376854	16	0.4707	SMALL-GAIN	FOCAL	4	"C1orf61,CCT3,RHBG,TSACC"
TCGA.AG.3906.01A	1	156384394	156517823	31	0.385	SMALL-GAIN	FOCAL	3	"C1orf61,IQGAP3,MEF2D"
TCGA.AG.3909.01A	1	156498687	156553540	32	0.4628	SMALL-GAIN	FOCAL	2	"IQGAP3,TTC24"
TCGA.AA.A00N.01A	1	156530678	156552797	13	0.534	SMALL-GAIN	FOCAL	2	"IQGAP3,TTC24"
TCGA.CK.5914.01A	1	156756382	156784779	12	0.5806	SMALL-GAIN	FOCAL	2	"PRCC,SH2D2A"
TCGA.AA.A010.01A	1	156770109	157497370	128	0.4551	SMALL-GAIN	FOCAL	10	"ARHGEF11,ETV3,ETV3L,FCRL5,INSRR,LRRC71,NTRK1,PEAR1,PRCC,SH2D2A"
TCGA.AA.A02E.01A	1	156906576	156914819	11	0.4441	SMALL-GAIN	FOCAL	1	ARHGEF11
TCGA.AA.A00N.01A	1	156906576	157106020	45	0.4799	SMALL-GAIN	FOCAL	3	"ARHGEF11,ETV3,ETV3L"
TCGA.AA.A01Q.01A	1	156937727	156955828	10	0.3979	SMALL-GAIN	FOCAL	1	ARHGEF11
TCGA.AG.3909.01A	1	156937727	156955828	10	0.6113	SMALL-GAIN	FOCAL	1	ARHGEF11
TCGA.AA.A01Q.01A	1	157485423	158045871	69	0.4763	SMALL-GAIN	FOCAL	7	"CD5L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,KIRREL"
TCGA.AG.3909.01A	1	157485423	158047733	70	0.433	SMALL-GAIN	FOCAL	7	"CD5L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,KIRREL"
TCGA.CK.5914.01A	1	157490199	157804150	62	0.5632	SMALL-GAIN	FOCAL	6	"CD5L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5"
TCGA.AA.A02H.01A	1	157494016	157719353	38	0.5045	SMALL-GAIN	FOCAL	4	"FCRL2,FCRL3,FCRL4,FCRL5"
TCGA.AG.A025.01A	1	157494016	157773593	54	0.4992	SMALL-GAIN	FOCAL	5	"FCRL1,FCRL2,FCRL3,FCRL4,FCRL5"
TCGA.AA.3930.01A	1	157550038	157558947	6	0.4891	SMALL-GAIN	FOCAL	1	FCRL4
TCGA.AA.A010.01A	1	157789715	158326541	48	0.5923	SMALL-GAIN	FOCAL	8	"CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,FCRL1,KIRREL"
TCGA.AA.A01Q.01A	1	158064045	158325575	25	0.4366	SMALL-GAIN	FOCAL	6	"CD1A,CD1B,CD1C,CD1D,CD1E,KIRREL"
TCGA.AG.A00C.01A	1	158301097	158326541	7	0.4286	SMALL-GAIN	FOCAL	2	"CD1B,CD1E"
TCGA.CK.5914.01A	1	158368327	158618269	35	0.4424	SMALL-GAIN	FOCAL	9	"OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6P1,OR6Y1,SPTA1"
TCGA.AA.A010.01A	1	158587251	158597363	8	0.5435	SMALL-GAIN	FOCAL	1	SPTA1
TCGA.AA.A02H.01A	1	158632492	158746475	20	0.6316	SMALL-GAIN	FOCAL	6	"OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,SPTA1"
TCGA.AG.A01W.01A	1	158723059	158848859	17	0.5938	SMALL-GAIN	FOCAL	4	"MNDA,OR6K6,OR6N1,OR6N2"
TCGA.AA.A010.01A	1	158724564	159175197	45	0.4908	SMALL-GAIN	FOCAL	9	"ACKR1,AIM2,CADM3,IFI16,MNDA,OR6K6,OR6N1,OR6N2,PYHIN1"
TCGA.AG.A01W.01A	1	158948051	159064101	19	0.5489	SMALL-GAIN	FOCAL	2	"AIM2,IFI16"
TCGA.AA.A00N.01A	1	159409512	159803004	22	0.4992	SMALL-GAIN	FOCAL	7	"APCS,CRP,DUSP23,FCRL6,OR10J1,OR10J5,SLAMF8"
TCGA.AG.3909.01A	1	159772147	159803004	12	0.6708	SMALL-GAIN	FOCAL	2	"FCRL6,SLAMF8"
TCGA.AF.3914.01A	1	159860228	159913134	25	0.382	SMALL-GAIN	FOCAL	3	"CFAP45,IGSF9,TAGLN2"
TCGA.AA.A00N.01A	1	160068134	160094887	8	0.5702	SMALL-GAIN	FOCAL	2	"ATP1A2,IGSF8"
TCGA.AA.A00N.01A	1	160147300	160160492	5	0.3863	SMALL-GAIN	FOCAL	2	"ATP1A4,CASQ1"
TCGA.AA.A02K.01A	1	160164786	160170985	8	0.4828	SMALL-GAIN	FOCAL	1	CASQ1
TCGA.AA.A00N.01A	1	160208360	160460326	67	0.4282	SMALL-GAIN	FOCAL	7	"COPA,DCAF8,NCSTN,NHLH1,PEX19,SLAMF6,VANGL2"
TCGA.AA.A010.01A	1	160209490	160313163	38	0.6672	SMALL-GAIN	FOCAL	4	"COPA,DCAF8,NCSTN,PEX19"
TCGA.AA.A02H.01A	1	160456434	160797491	44	0.5506	SMALL-GAIN	FOCAL	6	"CD48,CD84,LY9,SLAMF1,SLAMF6,SLAMF7"
TCGA.AA.A00F.01A	1	161007522	161018455	11	0.4694	SMALL-GAIN	FOCAL	3	"ARHGAP30,TSTD1,USF1"
TCGA.AA.A010.01A	1	161039287	161123758	25	0.4467	SMALL-GAIN	FOCAL	7	"ARHGAP30,DEDD,KLHDC9,NIT1,PFDN2,PVRL4,UFC1"
TCGA.AA.A00N.01A	1	161160891	161172123	9	0.6686	SMALL-GAIN	FOCAL	2	"ADAMTS4,NDUFS2"
TCGA.AG.3909.01A	1	161160891	161206212	37	0.4085	SMALL-GAIN	FOCAL	6	"ADAMTS4,APOA2,FCER1G,NDUFS2,NR1I3,TOMM40L"
TCGA.AA.A010.01A	1	161193069	161337554	32	0.5793	SMALL-GAIN	FOCAL	7	"APOA2,CFAP126,MPZ,NR1I3,PCP4L1,SDHC,TOMM40L"
TCGA.AA.A010.01A	1	161487718	161512753	5	0.5663	SMALL-GAIN	FOCAL	3	"FCGR2A,FCGR3A,HSPA6"
TCGA.AA.A010.01A	1	161693155	162473492	58	0.6729	SMALL-GAIN	FOCAL	9	"ATF6,C1orf111,C1orf226,DUSP12,FCRLB,NOS1AP,OLFML2B,SH2D1B,UHMK1"
TCGA.AA.A00N.01A	1	161736092	162467739	46	0.5815	SMALL-GAIN	FOCAL	7	"ATF6,C1orf111,C1orf226,NOS1AP,OLFML2B,SH2D1B,UHMK1"
TCGA.AG.A00C.01A	1	162467739	162549166	10	0.4244	SMALL-GAIN	FOCAL	2	"UAP1,UHMK1"
TCGA.AZ.4684.01A	1	162688793	163187264	42	0.5362	SMALL-GAIN	FOCAL	5	"C1orf110,DDR2,HSD17B7,RGS4,RGS5"
TCGA.AG.3891.01A	1	165859394	166829383	17	0.382	SMALL-GAIN	FOCAL	4	"FAM78B,POGK,TADA1,UCK2"
TCGA.AA.A01Q.01A	1	167023534	167402182	31	0.448	SMALL-GAIN	FOCAL	4	"CD247,DUSP27,GPA33,POU2F1"
TCGA.AA.3509.01A	1	167023534	167962447	97	0.4084	SMALL-GAIN	FOCAL	10	"ADCY10,CD247,CREG1,DCAF6,DUSP27,GPA33,MPC2,MPZL1,POU2F1,RCSD1"
TCGA.AG.A00C.01A	1	167778868	167805495	10	0.4121	SMALL-GAIN	FOCAL	1	ADCY10
TCGA.AA.A00N.01A	1	167814773	167874183	19	0.5103	SMALL-GAIN	FOCAL	1	ADCY10
TCGA.AA.A00N.01A	1	167944066	167992154	9	0.6775	SMALL-GAIN	FOCAL	1	DCAF6
TCGA.AG.A00C.01A	1	168014096	168044565	6	0.5847	SMALL-GAIN	FOCAL	1	DCAF6
TCGA.AA.3509.01A	1	168020051	169336858	65	0.5027	SMALL-GAIN	FOCAL	10	"ATP1B1,DCAF6,DPT,GPR161,NME7,SFT2D2,TBX19,TIPRL,XCL1,XCL2"
TCGA.AG.3906.01A	1	168034806	168054738	5	0.4952	SMALL-GAIN	FOCAL	2	"DCAF6,GPR161"
TCGA.AG.3909.01A	1	168054738	168073676	5	0.443	SMALL-GAIN	FOCAL	1	GPR161
TCGA.AG.A00C.01A	1	168153149	168215884	13	0.5206	SMALL-GAIN	FOCAL	2	"SFT2D2,TIPRL"
TCGA.AA.A01Q.01A	1	168250310	169076020	20	0.4682	SMALL-GAIN	FOCAL	5	"ATP1B1,DPT,TBX19,XCL1,XCL2"
TCGA.AG.3909.01A	1	168510153	169076020	11	0.5749	SMALL-GAIN	FOCAL	4	"ATP1B1,DPT,XCL1,XCL2"
TCGA.A6.2678	1	168991438	169103322	53	0.5206	SMALL-GAIN	FOCAL	2	"ATP1B1,NME7"
TCGA.AA.A00N.01A	1	169923101	169947179	4	0.5141	SMALL-GAIN	FOCAL	1	KIFAP3
TCGA.AA.A00N.01A	1	171751061	172437547	42	0.6028	SMALL-GAIN	FOCAL	4	"C1orf105,DNM3,METTL13,PIGC"
TCGA.CK.5914.01A	1	171765575	172376885	26	0.3904	SMALL-GAIN	FOCAL	2	"DNM3,METTL13"
TCGA.CK.4948.01B	1	172100268	172277851	6	0.4485	SMALL-GAIN	FOCAL	1	DNM3
TCGA.AG.A01W.01A	1	172214198	173364338	50	0.4671	SMALL-GAIN	FOCAL	7	"C1orf105,DNM3,FASLG,PIGC,SUCO,TNFSF18,TNFSF4"
TCGA.AG.3906.01A	1	173550959	173593878	8	0.6116	SMALL-GAIN	FOCAL	2	"ANKRD45,SLC9C2"
TCGA.AA.A010.01A	1	173638875	173961886	61	0.5109	SMALL-GAIN	FOCAL	7	"ANKRD45,CENPL,DARS2,KLHL20,RC3H1,SERPINC1,ZBTB37"
TCGA.AG.A00C.01A	1	173822901	173842583	5	0.5092	SMALL-GAIN	FOCAL	2	"DARS2,ZBTB37"
TCGA.AA.A00N.01A	1	174721371	174945168	8	0.531	SMALL-GAIN	FOCAL	1	RABGAP1L
TCGA.AA.A00N.01A	1	175086063	175105920	8	0.5607	SMALL-GAIN	FOCAL	1	TNN
TCGA.AG.3909.01A	1	175092484	175916256	32	0.5258	SMALL-GAIN	FOCAL	4	"KIAA0040,RFWD2,TNN,TNR"
TCGA.CK.5914.01A	1	175335002	175914196	10	0.6646	SMALL-GAIN	FOCAL	2	"RFWD2,TNR"
TCGA.CK.5914.01A	1	176085711	178435008	106	0.6658	SMALL-GAIN	FOCAL	6	"ASTN1,BRINP2,PAPPA2,RASAL2,RFWD2,SEC16B"
TCGA.EI.7004	1	176237220	176275115	12	0.5818	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00Q.01A	1	176525512	176758896	7	0.4342	SMALL-GAIN	FOCAL	1	PAPPA2
TCGA.AG.3909.01A	1	176525512	177936781	80	0.4957	SMALL-GAIN	FOCAL	4	"ASTN1,BRINP2,PAPPA2,SEC16B"
TCGA.AA.A00Q.01A	1	177901597	177920993	3	0.5861	SMALL-GAIN	FOCAL	1	SEC16B
TCGA.AA.3850	1	178927452	179589244	196	0.38235	SMALL-GAIN	FOCAL	7	"ABL2,AXDND1,FAM20B,NPHS2,SOAT1,TDRD5,TOR3A"
TCGA.AG.3906.01A	1	179380244	179401388	4	0.6132	SMALL-GAIN	FOCAL	1	AXDND1
TCGA.CK.5914.01A	1	180235477	180382459	8	0.5776	SMALL-GAIN	FOCAL	2	"ACBD6,LHX4"
TCGA.AG.A00C.01A	1	181003091	181452869	9	0.487	SMALL-GAIN	FOCAL	3	"CACNA1E,IER5,MR1"
TCGA.AG.3909.01A	1	181479584	181685121	9	0.5742	SMALL-GAIN	FOCAL	1	CACNA1E
TCGA.AA.A00N.01A	1	182835576	182874619	18	0.603	SMALL-GAIN	FOCAL	2	"DHX9,SHCBP1L"
TCGA.AA.A010.01A	1	182849595	183441669	74	0.6501	SMALL-GAIN	FOCAL	6	"DHX9,LAMC1,LAMC2,NMNAT2,SHCBP1L,SMG7"
TCGA.AG.A00C.01A	1	182898732	182992801	6	0.4129	SMALL-GAIN	FOCAL	2	"LAMC1,SHCBP1L"
TCGA.CK.5914.01A	1	183090836	183592511	90	0.664	SMALL-GAIN	FOCAL	5	"LAMC1,LAMC2,NCF2,NMNAT2,SMG7"
TCGA.AG.3909.01A	1	183184570	183273753	30	0.5648	SMALL-GAIN	FOCAL	2	"LAMC2,NMNAT2"
TCGA.AG.A01W.01A	1	183426255	184540502	130	0.5897	SMALL-GAIN	FOCAL	8	"APOBEC4,ARPC5,C1orf21,COLGALT2,NCF2,RGL1,SMG7,TSEN15"
TCGA.AG.3909.01A	1	183514047	183559242	22	0.4393	SMALL-GAIN	FOCAL	2	"NCF2,SMG7"
TCGA.CK.5914.01A	1	183816653	184853740	71	0.4534	SMALL-GAIN	FOCAL	6	"C1orf21,COLGALT2,EDEM3,FAM129A,RGL1,TSEN15"
TCGA.AG.3611.01A	1	184041880	185153343	67	0.3946	SMALL-GAIN	FOCAL	7	"C1orf21,EDEM3,FAM129A,RNF2,SWT1,TRMT1L,TSEN15"
TCGA.AA.A02H.01A	1	185902654	186017827	31	0.6034	SMALL-GAIN	FOCAL	1	HMCN1
TCGA.CK.5914.01A	1	185931633	185987266	22	0.4206	SMALL-GAIN	FOCAL	1	HMCN1
TCGA.AA.A02H.01A	1	186031643	186043836	6	0.4925	SMALL-GAIN	FOCAL	1	HMCN1
TCGA.AA.A010.01A	1	186072606	186086079	8	0.5665	SMALL-GAIN	FOCAL	1	HMCN1
TCGA.AG.A01N.01A	1	186286573	186296625	8	0.5275	SMALL-GAIN	FOCAL	1	TPR
TCGA.AZ.4684.01A	1	186308727	186326520	15	0.3965	SMALL-GAIN	FOCAL	1	TPR
TCGA.AA.A010.01A	1	186314663	186880328	54	0.5309	SMALL-GAIN	FOCAL	6	"C1orf27,OCLM,PDC,PLA2G4A,PTGS2,TPR"
TCGA.AA.3509.01A	1	186336970	190067151	46	0.6647	SMALL-GAIN	FOCAL	7	"BRINP3,C1orf27,OCLM,PDC,PLA2G4A,PTGS2,TPR"
TCGA.AA.A00N.01A	1	186363016	186418490	10	0.6147	SMALL-GAIN	FOCAL	3	"C1orf27,OCLM,PDC"
TCGA.CK.5914.01A	1	186649298	186915717	11	0.4338	SMALL-GAIN	FOCAL	2	"PLA2G4A,PTGS2"
TCGA.AA.A00N.01A	1	186823422	186946678	14	0.5527	SMALL-GAIN	FOCAL	1	PLA2G4A
TCGA.AA.A010.01A	1	186925267	192129441	16	0.6161	SMALL-GAIN	FOCAL	3	"BRINP3,PLA2G4A,RGS18"
TCGA.AY.6196	1	189128123	189660571	135	0.5869	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	1	189139921	189276961	30	0.6523	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	1	190129756	192628426	24	0.5961	SMALL-GAIN	FOCAL	5	"BRINP3,RGS1,RGS13,RGS18,RGS21"
TCGA.AA.A00N.01A	1	192150372	192628426	14	0.4928	SMALL-GAIN	FOCAL	4	"RGS1,RGS13,RGS18,RGS21"
TCGA.F5.6811.01A	1	195327633	195353515	8	0.4135	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	1	196227327	196759126	53	0.4065	SMALL-GAIN	FOCAL	3	"CFH,CFHR3,KCNT2"
TCGA.DY.A1H8	1	196455364	196557328	23	0.4424	SMALL-GAIN	FOCAL	1	KCNT2
TCGA.AA.A02H.01A	1	196871526	197102468	53	0.4625	SMALL-GAIN	FOCAL	5	"ASPM,CFHR2,CFHR4,CFHR5,F13B"
TCGA.F5.6811.01A	1	196969908	196991611	12	0.4017	SMALL-GAIN	FOCAL	1	CFHR5
TCGA.AA.A02H.01A	1	197115219	197160775	10	0.4431	SMALL-GAIN	FOCAL	2	"ASPM,ZBTB41"
TCGA.AA.A02H.01A	1	197325951	197704643	28	0.6227	SMALL-GAIN	FOCAL	2	"CRB1,DENND1B"
TCGA.AA.A01Q.01A	1	197886907	197898112	5	0.6183	SMALL-GAIN	FOCAL	1	LHX9
TCGA.AA.A00N.01A	1	197886907	198827964	52	0.5054	SMALL-GAIN	FOCAL	4	"ATP6V1G3,LHX9,NEK7,PTPRC"
TCGA.AA.A02H.01A	1	197889055	198713131	41	0.4621	SMALL-GAIN	FOCAL	4	"ATP6V1G3,LHX9,NEK7,PTPRC"
TCGA.DM.A28M.01A	1	198711022	200080303	17	0.4924	SMALL-GAIN	FOCAL	2	"NR5A2,PTPRC"
TCGA.CK.5914.01A	1	198721676	198827964	4	0.4202	SMALL-GAIN	FOCAL	1	PTPRC
TCGA.CK.5914.01A	1	200558297	200574363	11	0.3972	SMALL-GAIN	FOCAL	1	KIF14
TCGA.AA.A00N.01A	1	200729929	200818353	12	0.5226	SMALL-GAIN	FOCAL	1	CAMSAP2
TCGA.CK.5914.01A	1	200992405	201039363	28	0.5445	SMALL-GAIN	FOCAL	2	"CACNA1S,KIF21B"
TCGA.AA.A00F.01A	1	201453779	201465282	5	0.4115	SMALL-GAIN	FOCAL	1	CSRP1
TCGA.CK.5914.01A	1	201709091	201763557	12	0.5065	SMALL-GAIN	FOCAL	1	NAV1
TCGA.AG.3906.01A	1	201926367	201972315	11	0.6353	SMALL-GAIN	FOCAL	2	"RNPEP,TIMM17A"
TCGA.AG.3906.01A	1	202126828	202273626	16	0.4292	SMALL-GAIN	FOCAL	2	"LGR6,PTPN7"
TCGA.AA.A010.01A	1	202204986	202272340	7	0.5384	SMALL-GAIN	FOCAL	1	LGR6
TCGA.CK.5914.01A	1	202442972	202574676	22	0.5775	SMALL-GAIN	FOCAL	2	"PPP1R12B,SYT2"
TCGA.AG.A008.01A	1	202698125	202702481	5	0.5848	SMALL-GAIN	FOCAL	1	KDM5B
TCGA.AA.A00N.01A	1	203008095	203024510	15	0.6204	SMALL-GAIN	FOCAL	1	PPFIA4
TCGA.AG.3909.01A	1	203140463	203742955	62	0.4421	SMALL-GAIN	FOCAL	9	"ATP2B4,BTG2,CHI3L1,CHIT1,FMOD,LAX1,MYBPH,OPTC,PRELP"
TCGA.CK.5914.01A	1	203141047	203155660	13	0.3814	SMALL-GAIN	FOCAL	2	"CHI3L1,MYBPH"
TCGA.AA.A01C.01A	1	203186816	203194748	7	0.5384	SMALL-GAIN	FOCAL	1	CHIT1
TCGA.AA.A00N.01A	1	203274688	203676940	21	0.4985	SMALL-GAIN	FOCAL	5	"ATP2B4,BTG2,FMOD,OPTC,PRELP"
TCGA.A6.3808.01A	1	203652326	203741136	26	0.3892	SMALL-GAIN	FOCAL	2	"ATP2B4,LAX1"
TCGA.AA.A00N.01A	1	203697221	203787661	10	0.4904	SMALL-GAIN	FOCAL	4	"ATP2B4,LAX1,ZBED6,ZC3H11A"
TCGA.AG.A00C.01A	1	203786129	203834112	19	0.3863	SMALL-GAIN	FOCAL	2	"SNRPE,ZC3H11A"
TCGA.AA.A00F.01A	1	203802850	203817410	5	0.5879	SMALL-GAIN	FOCAL	1	ZC3H11A
TCGA.AA.A00N.01A	1	203830724	204094979	17	0.6071	SMALL-GAIN	FOCAL	2	"SNRPE,SOX13"
TCGA.AG.3891.01A	1	204106194	204131090	15	0.4926	SMALL-GAIN	FOCAL	2	"ETNK2,REN"
TCGA.AG.3906.01A	1	204130392	204135277	3	0.5372	SMALL-GAIN	FOCAL	1	REN
TCGA.CK.5914.01A	1	204199509	204242705	16	0.6193	SMALL-GAIN	FOCAL	1	PLEKHA6
TCGA.AA.A010.01A	1	204401327	205038556	86	0.5963	SMALL-GAIN	FOCAL	5	"CNTN2,LRRN2,MDM4,NFASC,PIK3C2B"
TCGA.CK.5914.01A	1	204408056	204438521	22	0.5775	SMALL-GAIN	FOCAL	1	PIK3C2B
TCGA.AG.3909.01A	1	204429414	204438521	7	0.3798	SMALL-GAIN	FOCAL	1	PIK3C2B
TCGA.AG.3909.01A	1	205027665	205197671	47	0.4322	SMALL-GAIN	FOCAL	5	"CNTN2,DSTYK,RBBP5,TMCC2,TMEM81"
TCGA.CK.5914.01A	1	205042757	205180362	28	0.6635	SMALL-GAIN	FOCAL	4	"CNTN2,DSTYK,RBBP5,TMEM81"
TCGA.AA.A01Q.01A	1	205063974	205210584	26	0.4955	SMALL-GAIN	FOCAL	3	"DSTYK,RBBP5,TMCC2"
TCGA.AA.A010.01A	1	205238066	205385311	19	0.5979	SMALL-GAIN	FOCAL	4	"KLHDC8A,LEMD1,NUAK2,TMCC2"
TCGA.AA.A00N.01A	1	205498088	205566857	13	0.5464	SMALL-GAIN	FOCAL	2	"CDK18,MFSD4"
TCGA.AG.3906.01A	1	205585642	205633564	8	0.6734	SMALL-GAIN	FOCAL	2	"ELK4,SLC45A3"
TCGA.AG.A00C.01A	1	205585642	205741559	18	0.4173	SMALL-GAIN	FOCAL	4	"ELK4,NUCKS1,RAB29,SLC45A3"
TCGA.AG.3909.01A	1	205801674	205904773	29	0.5948	SMALL-GAIN	FOCAL	2	"PM20D1,SLC26A9"
TCGA.AG.3909.01A	1	206243098	206646523	30	0.4616	SMALL-GAIN	FOCAL	6	"C1orf186,CTSE,IKBKE,SRGAP2,SRGAP2B,SRGAP2C"
TCGA.AA.A00Q.01A	1	206592637	206619394	3	0.6465	SMALL-GAIN	FOCAL	1	SRGAP2
TCGA.AG.A00C.01A	1	206772788	206821892	13	0.5456	SMALL-GAIN	FOCAL	2	"DYRK3,EIF2D"
TCGA.CK.5914.01A	1	206903969	207073582	21	0.6046	SMALL-GAIN	FOCAL	5	"IL10,IL19,IL20,IL24,MAPKAPK2"
TCGA.AG.3909.01A	1	207107756	207200798	15	0.478	SMALL-GAIN	FOCAL	3	"C1orf116,FCAMR,PIGR"
TCGA.CK.5914.01A	1	207240822	207317839	25	0.3855	SMALL-GAIN	FOCAL	3	"C4BPA,C4BPB,PFKFB2"
TCGA.AA.3870	1	207573230	208598449	453	0.4282	SMALL-GAIN	FOCAL	6	"CD34,CD46,CR1,CR1L,CR2,PLXNA2"
TCGA.AA.A01C.01A	1	207641845	207653260	13	0.4612	SMALL-GAIN	FOCAL	1	CR2
TCGA.AA.3941	1	207660070	208450000	332	0.4175	SMALL-GAIN	FOCAL	6	"CD34,CD46,CR1,CR1L,CR2,PLXNA2"
TCGA.AG.3909.01A	1	208200549	208390078	30	0.6131	SMALL-GAIN	FOCAL	1	PLXNA2
TCGA.D5.6923	1	208437820	208455086	17	0.5997	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3727	1	209411970	209784187	168	0.4168	SMALL-GAIN	FOCAL	2	"CAMK1G,MIR205HG"
TCGA.AA.3941	1	209728048	210198268	224	0.3831	SMALL-GAIN	FOCAL	9	"C1orf74,CAMK1G,DIEXF,G0S2,HSD11B1,IRF6,LAMB3,SYT14,TRAF3IP3"
TCGA.AA.A010.01A	1	209933343	210001367	21	0.5478	SMALL-GAIN	FOCAL	4	"C1orf74,DIEXF,IRF6,TRAF3IP3"
TCGA.AG.3909.01A	1	210573765	211256075	16	0.5827	SMALL-GAIN	FOCAL	2	"HHAT,KCNH1"
TCGA.CK.5914.01A	1	210856620	211256075	8	0.4414	SMALL-GAIN	FOCAL	1	KCNH1
TCGA.AA.3941	1	211358607	212242229	240	0.4373	SMALL-GAIN	FOCAL	8	"DTL,INTS7,LPGAT1,NEK2,RCOR3,RD3,SLC30A1,TRAF5"
TCGA.AG.A00C.01A	1	212179954	212194378	6	0.6321	SMALL-GAIN	FOCAL	1	INTS7
TCGA.AA.A00N.01A	1	212208655	212560193	33	0.4848	SMALL-GAIN	FOCAL	4	"DTL,INTS7,PPP2R5A,TMEM206"
TCGA.AG.A01L.01A	1	212548494	212553190	3	0.6331	SMALL-GAIN	FOCAL	1	TMEM206
TCGA.AG.3906.01A	1	212583718	213147250	42	0.4209	SMALL-GAIN	FOCAL	10	"ATF3,BATF3,FAM71A,FLVCR1,NENF,NSL1,SPATA45,TATDN3,TMEM206,VASH2"
TCGA.DM.A1HB	1	214043215	214080640	22	0.5919	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	1	214503470	214637921	23	0.6067	SMALL-GAIN	FOCAL	2	"PTPN14,SMYD2"
TCGA.AA.A00F.01A	1	214787061	214802347	7	0.397	SMALL-GAIN	FOCAL	1	CENPF
TCGA.AG.A00C.01A	1	214787061	214802347	7	0.4407	SMALL-GAIN	FOCAL	1	CENPF
TCGA.DY.A1H8	1	215083767	215094200	9	0.4767	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1H8	1	215251226	215405911	52	0.5415	SMALL-GAIN	FOCAL	1	KCNK2
TCGA.AG.A00C.01A	1	215747099	215759801	8	0.495	SMALL-GAIN	FOCAL	1	KCTD3
TCGA.CK.5914.01A	1	215959975	216850396	58	0.5319	SMALL-GAIN	FOCAL	2	"ESRRG,USH2A"
TCGA.AA.3509.01A	1	217804653	220193289	55	0.6068	SMALL-GAIN	FOCAL	6	"EPRS,LYPLAL1,RRP15,SLC30A10,SPATA17,TGFB2"
TCGA.AA.3941	1	220069859	220479606	102	0.4412	SMALL-GAIN	FOCAL	5	"BPNT1,EPRS,IARS2,RAB3GAP2,SLC30A10"
TCGA.AA.A00F.01A	1	220088741	220100310	3	0.3836	SMALL-GAIN	FOCAL	1	SLC30A10
TCGA.AA.3509.01A	1	220335477	222731951	76	0.5587	SMALL-GAIN	FOCAL	9	"C1orf115,DUSP10,HHIPL2,HLX,MARC1,MARC2,MARK1,RAB3GAP2,TAF1A"
TCGA.AG.A00C.01A	1	220869914	220955073	6	0.4491	SMALL-GAIN	FOCAL	2	"C1orf115,MARC2"
TCGA.AG.A00C.01A	1	222794479	222806398	8	0.561	SMALL-GAIN	FOCAL	1	MIA3
TCGA.AA.A00N.01A	1	222817769	222849401	19	0.4531	SMALL-GAIN	FOCAL	2	"AIDA,MIA3"
TCGA.AG.3891.01A	1	222919861	222922755	3	0.4827	SMALL-GAIN	FOCAL	1	FAM177B
TCGA.AA.A00N.01A	1	222919861	223853110	47	0.603	SMALL-GAIN	FOCAL	6	"CAPN8,CCDC185,DISP1,FAM177B,SUSD4,TLR5"
TCGA.AA.A010.01A	1	223395459	223465730	8	0.6222	SMALL-GAIN	FOCAL	1	SUSD4
TCGA.CK.5914.01A	1	223711397	223900334	21	0.6353	SMALL-GAIN	FOCAL	2	"CAPN2,CAPN8"
TCGA.AA.A010.01A	1	223716409	223807832	10	0.4966	SMALL-GAIN	FOCAL	1	CAPN8
TCGA.AA.A010.01A	1	223932969	223954003	13	0.5068	SMALL-GAIN	FOCAL	1	CAPN2
TCGA.CK.5914.01A	1	223951783	224301800	26	0.53	SMALL-GAIN	FOCAL	3	"CAPN2,FBXO28,TP53BP2"
TCGA.AA.A00N.01A	1	223968479	224301800	19	0.6775	SMALL-GAIN	FOCAL	2	"FBXO28,TP53BP2"
TCGA.AA.A010.01A	1	224033270	224544560	34	0.5148	SMALL-GAIN	FOCAL	5	"CNIH4,DEGS1,FBXO28,NVL,TP53BP2"
TCGA.AA.A00N.01A	1	224415259	224505349	21	0.4148	SMALL-GAIN	FOCAL	1	NVL
TCGA.AG.A00C.01A	1	225592054	225611582	11	0.4933	SMALL-GAIN	FOCAL	1	LBR
TCGA.AA.A00F.01A	1	225597961	225611582	9	0.3823	SMALL-GAIN	FOCAL	1	LBR
TCGA.CK.5914.01A	1	225685409	225723139	13	0.59	SMALL-GAIN	FOCAL	1	ENAH
TCGA.AA.3509.01A	1	226550733	227220974	71	0.4267	SMALL-GAIN	FOCAL	6	"ADCK3,C1orf95,CDC42BPA,ITPKB,PARP1,PSEN2"
TCGA.AA.A010.01A	1	226561885	226573987	9	0.3847	SMALL-GAIN	FOCAL	1	PARP1
TCGA.A6.2671	1	226648662	227129582	175	0.4319	SMALL-GAIN	FOCAL	4	"ADCK3,C1orf95,ITPKB,PSEN2"
TCGA.AA.A01Q.01A	1	227081656	227203739	18	0.5912	SMALL-GAIN	FOCAL	3	"ADCK3,CDC42BPA,PSEN2"
TCGA.AA.A010.01A	1	227216350	227261517	14	0.6012	SMALL-GAIN	FOCAL	1	CDC42BPA
TCGA.AA.3509.01A	1	227268585	227838637	20	0.5962	SMALL-GAIN	FOCAL	2	"CDC42BPA,ZNF678"
TCGA.A6.2671	1	227755766	228024875	63	0.4025	SMALL-GAIN	FOCAL	4	"JMJD4,PRSS38,SNAP47,ZNF678"
TCGA.AA.A02K.01A	1	228430864	228456226	8	0.5438	SMALL-GAIN	FOCAL	1	OBSCN
TCGA.AG.3906.01A	1	228538510	228565163	14	0.5452	SMALL-GAIN	FOCAL	1	OBSCN
TCGA.CK.5914.01A	1	228680717	228699882	5	0.543	SMALL-GAIN	FOCAL	2	"BTNL10,RNF187"
TCGA.AG.A01W.01A	1	229537921	229540727	5	0.6527	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	1	229676305	229772436	12	0.5209	SMALL-GAIN	FOCAL	3	"ABCB10,TAF5L,URB2"
TCGA.AG.A01W.01A	1	230634617	231010327	19	0.6366	SMALL-GAIN	FOCAL	4	"AGT,C1orf198,CAPN9,COG2"
TCGA.AA.A010.01A	1	230820814	231090028	54	0.4931	SMALL-GAIN	FOCAL	5	"AGT,C1orf198,CAPN9,COG2,TTC13"
TCGA.A6.2671	1	233010905	233076799	44	0.6408	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	233121721	234595976	82	0.5159	SMALL-GAIN	FOCAL	6	"COA6,KCNK1,KIAA1804,PCNXL2,SLC35F3,TARBP1"
TCGA.AG.A00C.01A	1	234599532	235323799	21	0.5949	SMALL-GAIN	FOCAL	4	"IRF2BP2,RBM34,TARBP1,TOMM20"
TCGA.AG.3611.01A	1	234742846	235291863	7	0.5982	SMALL-GAIN	FOCAL	2	"IRF2BP2,TOMM20"
TCGA.AG.A01W.01A	1	234773426	234789610	13	0.4753	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	235344882	235423907	18	0.6348	SMALL-GAIN	FOCAL	1	ARID4B
TCGA.AG.3891.01A	1	235505885	235621884	21	0.3872	SMALL-GAIN	FOCAL	3	"B3GALNT2,GGPS1,TBCE"
TCGA.AA.3509.01A	1	235944143	236558844	59	0.5245	SMALL-GAIN	FOCAL	5	"EDARADD,ERO1LB,GPR137B,LYST,NID1"
TCGA.AA.A00N.01A	1	236175169	236416697	32	0.609	SMALL-GAIN	FOCAL	3	"ERO1LB,GPR137B,NID1"
TCGA.AA.A00F.01A	1	236433145	236590681	5	0.4205	SMALL-GAIN	FOCAL	2	"EDARADD,ERO1LB"
TCGA.AG.A00C.01A	1	236433145	236590681	5	0.661	SMALL-GAIN	FOCAL	2	"EDARADD,ERO1LB"
TCGA.AA.A010.01A	1	236433145	236740030	40	0.6498	SMALL-GAIN	FOCAL	4	"EDARADD,ERO1LB,HEATR1,LGALS8"
TCGA.AG.A02X.01A	1	236703817	237995803	202	0.5775	SMALL-GAIN	FOCAL	6	"ACTN2,HEATR1,LGALS8,MT1HL1,MTR,RYR2"
TCGA.AA.A00N.01A	1	236706813	236907874	55	0.5924	SMALL-GAIN	FOCAL	3	"ACTN2,HEATR1,LGALS8"
TCGA.AA.3848	1	236787805	236792267	7	0.6325	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	1	236988572	237049573	18	0.4923	SMALL-GAIN	FOCAL	1	MTR
TCGA.AA.A00Q.01A	1	237494138	237946938	6	0.4697	SMALL-GAIN	FOCAL	1	RYR2
TCGA.CK.5914.01A	1	237919561	237955404	14	0.5252	SMALL-GAIN	FOCAL	1	RYR2
TCGA.AA.3850	1	240613202	240661636	28	0.56955	SMALL-GAIN	FOCAL	2	"FMN2,GREM2"
TCGA.CK.5914.01A	1	241682844	241767510	19	0.3868	SMALL-GAIN	FOCAL	3	"FH,KMO,OPN3"
TCGA.AG.A00C.01A	1	242013690	242023772	6	0.6497	SMALL-GAIN	FOCAL	1	EXO1
TCGA.AA.A00F.01A	1	242013690	242024669	7	0.4337	SMALL-GAIN	FOCAL	1	EXO1
TCGA.AA.A00N.01A	1	242030124	243589677	52	0.4405	SMALL-GAIN	FOCAL	6	"BECN2,CEP170,EXO1,MAP1LC3C,PLD5,SDCCAG8"
TCGA.AA.A00F.01A	1	243652275	243668497	3	0.4263	SMALL-GAIN	FOCAL	2	"AKT3,SDCCAG8"
TCGA.AA.3941	1	244138336	246293715	828	0.4119	SMALL-GAIN	FOCAL	10	"ADSS,C1orf100,C1orf101,COX20,DESI2,EFCAB2,HNRNPU,KIF26B,SMYD3,ZBTB18"
TCGA.CK.5914.01A	1	244579252	244595811	8	0.6516	SMALL-GAIN	FOCAL	1	ADSS
TCGA.AA.A00N.01A	1	244653664	244780782	14	0.5056	SMALL-GAIN	FOCAL	1	C1orf101
TCGA.AG.A008.01A	1	245005215	245023614	12	0.4991	SMALL-GAIN	FOCAL	2	"COX20,HNRNPU"
TCGA.AA.A00F.01A	1	245005215	245025716	13	0.4239	SMALL-GAIN	FOCAL	2	"COX20,HNRNPU"
TCGA.AG.A00C.01A	1	245005215	245025716	13	0.5751	SMALL-GAIN	FOCAL	2	"COX20,HNRNPU"
TCGA.AA.A010.01A	1	245026867	245809396	21	0.4308	SMALL-GAIN	FOCAL	3	"EFCAB2,HNRNPU,KIF26B"
TCGA.AA.A010.01A	1	245912818	246828960	32	0.5105	SMALL-GAIN	FOCAL	3	"CNST,SMYD3,TFB2M"
TCGA.CA.5254	1	246124690	246472731	138	0.611	SMALL-GAIN	FOCAL	1	SMYD3
TCGA.DC.6682	1	246273166	246281547	4	0.4089	SMALL-GAIN	FOCAL	1	SMYD3
TCGA.AA.A00N.01A	1	247004091	247070853	29	0.6753	SMALL-GAIN	FOCAL	1	AHCTF1
TCGA.AA.3850	1	247980675	248072011	44	0.41025	SMALL-GAIN	FOCAL	3	"OR11L1,OR2W3,TRIM58"
TCGA.G4.6299	2	21832	1786521	583	0.492	SMALL-GAIN	FOCAL	8	"ACP1,FAM110C,FAM150B,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AA.3941	2	21832	2303765	729	0.4011	SMALL-GAIN	FOCAL	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AG.3882	2	175406	343516	52	0.3991	SMALL-GAIN	FOCAL	3	"ACP1,FAM150B,SH3YL1"
TCGA.AA.3941	2	2604809	2958406	208	0.4138	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	2	2971476	4150556	467	0.4007	SMALL-GAIN	FOCAL	8	"ADI1,ALLC,COLEC11,DCDC2C,RNASEH1,RPS7,TRAPPC12,TSSC1"
TCGA.AA.A00F.01A	2	3517576	3687808	18	0.5088	SMALL-GAIN	FOCAL	4	"ADI1,COLEC11,RNASEH1,RPS7"
TCGA.AG.A00C.01A	2	3517576	3687808	18	0.5645	SMALL-GAIN	FOCAL	4	"ADI1,COLEC11,RNASEH1,RPS7"
TCGA.AA.A010.01A	2	3751411	3826331	9	0.5876	SMALL-GAIN	FOCAL	1	DCDC2C
TCGA.CK.5914.01A	2	7017895	9437377	58	0.3792	SMALL-GAIN	FOCAL	6	"ASAP2,ID2,KIDINS220,MBOAT2,RNF144A,RSAD2"
TCGA.CK.6746	2	7596270	7648654	25	0.6491	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	2	10095040	10585018	36	0.5543	SMALL-GAIN	FOCAL	7	"C2orf48,CYS1,GRHL1,HPCAL1,KLF11,ODC1,RRM2"
TCGA.AA.A01F.01A	2	10580803	10747294	15	0.4237	SMALL-GAIN	FOCAL	2	"NOL10,ODC1"
TCGA.AA.A010.01A	2	10712165	10829875	22	0.4782	SMALL-GAIN	FOCAL	1	NOL10
TCGA.AG.3909.01A	2	10712165	10829875	20	0.4587	SMALL-GAIN	FOCAL	1	NOL10
TCGA.CK.5914.01A	2	10712165	10829875	22	0.4649	SMALL-GAIN	FOCAL	1	NOL10
TCGA.AG.3611.01A	2	10729188	10743142	5	0.4736	SMALL-GAIN	FOCAL	1	NOL10
TCGA.AG.3611.01A	2	10912605	10914884	2	0.4969	SMALL-GAIN	FOCAL	1	ATP6V1C2
TCGA.AZ.4684.01A	2	11317863	11375829	26	0.3913	SMALL-GAIN	FOCAL	2	"PQLC3,ROCK2"
TCGA.AA.A010.01A	2	11605851	11706569	4	0.4937	SMALL-GAIN	FOCAL	2	"E2F6,GREB1"
TCGA.AG.A01W.01A	2	11646287	11668269	10	0.5195	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	11935517	11955186	6	0.6647	SMALL-GAIN	FOCAL	1	LPIN1
TCGA.AG.3909.01A	2	15307154	15330341	4	0.6417	SMALL-GAIN	FOCAL	1	NBAS
TCGA.CK.5914.01A	2	15307154	15651329	46	0.4509	SMALL-GAIN	FOCAL	1	NBAS
TCGA.AA.A01S	2	15726040	17536305	733	0.49715	SMALL-GAIN	FOCAL	3	"DDX1,FAM49A,MYCN"
TCGA.AA.A01C.01A	2	15769702	17907600	42	0.4399	SMALL-GAIN	FOCAL	6	"DDX1,FAM49A,MYCN,RAD51AP2,SMC6,VSNL1"
TCGA.AG.3909.01A	2	16734139	16769275	9	0.5831	SMALL-GAIN	FOCAL	1	FAM49A
TCGA.AG.A01W.01A	2	17751918	17765642	8	0.6058	SMALL-GAIN	FOCAL	1	VSNL1
TCGA.AG.A01W.01A	2	17822705	19415479	18	0.6256	SMALL-GAIN	FOCAL	8	"GEN1,KCNS3,MSGN1,NT5C1B,NT5C1B-RDH14,RDH14,SMC6,VSNL1"
TCGA.AZ.4614	2	17924532	18328338	182	0.4474	SMALL-GAIN	FOCAL	4	"GEN1,KCNS3,MSGN1,SMC6"
TCGA.AA.3930.01A	2	17947799	17955516	6	0.4928	SMALL-GAIN	FOCAL	1	GEN1
TCGA.CK.5914.01A	2	17952432	18112258	10	0.5761	SMALL-GAIN	FOCAL	3	"GEN1,KCNS3,MSGN1"
TCGA.AA.A00N.01A	2	17955516	18112258	7	0.4739	SMALL-GAIN	FOCAL	3	"GEN1,KCNS3,MSGN1"
TCGA.AA.A010.01A	2	19551997	20192799	35	0.4499	SMALL-GAIN	FOCAL	4	"MATN3,OSR1,TTC32,WDR35"
TCGA.AA.3941	2	19779371	20945496	532	0.3997	SMALL-GAIN	FOCAL	10	"GDF7,HS1BP3,LAPTM4A,LDAH,MATN3,PUM2,RHOB,SDC1,TTC32,WDR35"
TCGA.AG.A01W.01A	2	19976764	20029926	19	0.5495	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	20101415	20147861	15	0.5046	SMALL-GAIN	FOCAL	2	"TTC32,WDR35"
TCGA.AA.A00N.01A	2	20101415	20169194	21	0.6253	SMALL-GAIN	FOCAL	2	"TTC32,WDR35"
TCGA.AG.A00C.01A	2	20180397	20240605	16	0.5444	SMALL-GAIN	FOCAL	3	"LAPTM4A,MATN3,WDR35"
TCGA.CK.5914.01A	2	20455775	21249610	52	0.4142	SMALL-GAIN	FOCAL	6	"APOB,GDF7,HS1BP3,LDAH,PUM2,RHOB"
TCGA.AA.A00N.01A	2	20462937	20818709	19	0.5304	SMALL-GAIN	FOCAL	3	"HS1BP3,PUM2,RHOB"
TCGA.AA.3850	2	20484388	20903014	171	0.42585	SMALL-GAIN	FOCAL	5	"GDF7,HS1BP3,LDAH,PUM2,RHOB"
TCGA.AA.3941	2	21000029	21056771	16	0.4165	SMALL-GAIN	FOCAL	1	LDAH
TCGA.AA.3941	2	21237543	21268218	18	0.4344	SMALL-GAIN	FOCAL	1	APOB
TCGA.AA.3941	2	23542032	23958163	190	0.489	SMALL-GAIN	FOCAL	1	KLHL29
TCGA.AA.A00N.01A	2	24239688	24246963	8	0.4263	SMALL-GAIN	FOCAL	1	MFSD2B
TCGA.AG.A00C.01A	2	24253772	24426453	24	0.4115	SMALL-GAIN	FOCAL	8	"C2orf44,FAM228A,FAM228B,FKBP1B,ITSN2,PFN4,SF3B6,TP53I3"
TCGA.AG.3906.01A	2	24338381	24345252	4	0.6251	SMALL-GAIN	FOCAL	2	"FAM228B,PFN4"
TCGA.AA.A00N.01A	2	24413233	24990884	61	0.5974	SMALL-GAIN	FOCAL	3	"FAM228A,ITSN2,NCOA1"
TCGA.AG.3909.01A	2	24468951	24522751	17	0.4394	SMALL-GAIN	FOCAL	1	ITSN2
TCGA.AG.3909.01A	2	24914378	24990884	15	0.4621	SMALL-GAIN	FOCAL	1	NCOA1
TCGA.AA.3930.01A	2	25355723	25459743	18	0.5004	SMALL-GAIN	FOCAL	3	"DNMT3A,EFR3B,POMC"
TCGA.AA.3930.01A	2	26417913	26437875	8	0.4312	SMALL-GAIN	FOCAL	1	HADHA
TCGA.AA.A01Q.01A	2	26508233	26717760	61	0.4713	SMALL-GAIN	FOCAL	5	"ADGRF3,DRC1,EPT1,HADHB,OTOF"
TCGA.AG.3909.01A	2	26532332	26568942	13	0.6765	SMALL-GAIN	FOCAL	1	ADGRF3
TCGA.AG.A01W.01A	2	26547407	26553252	8	0.4056	SMALL-GAIN	FOCAL	1	ADGRF3
TCGA.AA.3930.01A	2	26596195	26672810	19	0.3995	SMALL-GAIN	FOCAL	2	"DRC1,EPT1"
TCGA.AG.A01W.01A	2	27381293	27389314	8	0.5396	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	2	27429299	27455872	24	0.5841	SMALL-GAIN	FOCAL	3	"ATRAID,CAD,SLC5A6"
TCGA.AA.3862.01A	2	27429299	27550897	79	0.4814	SMALL-GAIN	FOCAL	9	"ATRAID,CAD,DNAJC5G,GTF3C2,MPV17,SLC30A3,SLC5A6,TRIM54,UCN"
TCGA.AG.A01W.01A	2	27447591	27460287	17	0.4971	SMALL-GAIN	FOCAL	1	CAD
TCGA.AG.3909.01A	2	27545253	27566153	16	0.5779	SMALL-GAIN	FOCAL	2	"GTF3C2,MPV17"
TCGA.AG.3906.01A	2	27550007	27566153	14	0.5217	SMALL-GAIN	FOCAL	1	GTF3C2
TCGA.AG.A01W.01A	2	27565909	27573230	6	0.6351	SMALL-GAIN	FOCAL	1	GTF3C2
TCGA.CK.5914.01A	2	27676040	27703906	24	0.5367	SMALL-GAIN	FOCAL	1	IFT172
TCGA.AG.3906.01A	2	27676040	27746095	51	0.6081	SMALL-GAIN	FOCAL	3	"FNDC4,GCKR,IFT172"
TCGA.CK.5914.01A	2	27728538	27746095	9	0.6755	SMALL-GAIN	FOCAL	1	GCKR
TCGA.AG.3909.01A	2	27730498	27746095	5	0.4718	SMALL-GAIN	FOCAL	1	GCKR
TCGA.A6.3810.01A	2	27741607	27746095	3	0.6649	SMALL-GAIN	FOCAL	1	GCKR
TCGA.AA.A00N.01A	2	27839069	28824058	113	0.4049	SMALL-GAIN	FOCAL	10	"BRE,CCDC121,FOSL2,GPN1,MRPL33,PLB1,RBKS,SLC4A1AP,SUPT7L,ZNF512"
TCGA.AA.3930.01A	2	28815478	28865683	28	0.5718	SMALL-GAIN	FOCAL	1	PLB1
TCGA.AA.A00N.01A	2	29136917	29296308	38	0.4338	SMALL-GAIN	FOCAL	3	"C2orf71,FAM179A,WDR43"
TCGA.AG.3909.01A	2	29145718	29226316	16	0.5819	SMALL-GAIN	FOCAL	2	"FAM179A,WDR43"
TCGA.AG.A01W.01A	2	29149172	29269568	17	0.407	SMALL-GAIN	FOCAL	2	"FAM179A,WDR43"
TCGA.AG.4009.01A	2	29220971	29296308	23	0.5226	SMALL-GAIN	FOCAL	2	"C2orf71,FAM179A"
TCGA.AA.A010.01A	2	29436799	30142807	23	0.657	SMALL-GAIN	FOCAL	1	ALK
TCGA.AA.3941	2	30292774	30680632	116	0.3884	SMALL-GAIN	FOCAL	3	"LBH,LCLAT1,YPEL5"
TCGA.AA.A010.01A	2	30454531	32093402	116	0.5009	SMALL-GAIN	FOCAL	9	"CAPN13,CAPN14,EHD3,GALNT14,LBH,LCLAT1,MEMO1,SRD5A2,XDH"
TCGA.AA.A00N.01A	2	30480298	31467113	68	0.6592	SMALL-GAIN	FOCAL	6	"CAPN13,CAPN14,EHD3,GALNT14,LBH,LCLAT1"
TCGA.AA.A010.01A	2	32264283	32503195	43	0.3879	SMALL-GAIN	FOCAL	5	"DPY30,NLRC4,SLC30A6,SPAST,YIPF4"
TCGA.CK.5914.01A	2	32288922	32503195	42	0.3972	SMALL-GAIN	FOCAL	4	"NLRC4,SLC30A6,SPAST,YIPF4"
TCGA.AG.A01W.01A	2	32564188	32572095	6	0.6682	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	32692556	32774333	40	0.5103	SMALL-GAIN	FOCAL	1	BIRC6
TCGA.AA.A00N.01A	2	32692556	36623725	133	0.5656	SMALL-GAIN	FOCAL	6	"BIRC6,CRIM1,FAM98A,LTBP1,RASGRP3,TTC27"
TCGA.AG.3909.01A	2	32701232	37143181	174	0.3919	SMALL-GAIN	FOCAL	9	"BIRC6,CRIM1,FAM98A,FEZ2,LTBP1,RASGRP3,STRN,TTC27,VIT"
TCGA.AA.A010.01A	2	32768291	36787871	121	0.4716	SMALL-GAIN	FOCAL	7	"BIRC6,CRIM1,FAM98A,FEZ2,LTBP1,RASGRP3,TTC27"
TCGA.A6.3808.01A	2	32927824	37143181	131	0.443	SMALL-GAIN	FOCAL	8	"CRIM1,FAM98A,FEZ2,LTBP1,RASGRP3,STRN,TTC27,VIT"
TCGA.CK.5914.01A	2	33245945	33764149	43	0.6479	SMALL-GAIN	FOCAL	2	"LTBP1,RASGRP3"
TCGA.AA.A00N.01A	2	36771492	37304002	80	0.4511	SMALL-GAIN	FOCAL	5	"CRIM1,FEZ2,HEATR5B,STRN,VIT"
TCGA.AG.A008.01A	2	36805713	36817996	4	0.5149	SMALL-GAIN	FOCAL	1	FEZ2
TCGA.AA.A010.01A	2	36943438	37143181	30	0.6281	SMALL-GAIN	FOCAL	2	"STRN,VIT"
TCGA.CK.5914.01A	2	36956555	37132626	28	0.6538	SMALL-GAIN	FOCAL	2	"STRN,VIT"
TCGA.AG.3909.01A	2	37321183	37364045	11	0.5069	SMALL-GAIN	FOCAL	2	"EIF2AK2,GPATCH11"
TCGA.CK.5914.01A	2	37334369	37362557	7	0.5091	SMALL-GAIN	FOCAL	1	EIF2AK2
TCGA.AA.3930.01A	2	37362557	37415531	15	0.4815	SMALL-GAIN	FOCAL	2	"EIF2AK2,SULT6B1"
TCGA.A6.3808.01A	2	37464878	38804548	72	0.5818	SMALL-GAIN	FOCAL	8	"ATL2,CDC42EP3,CYP1B1,HNRNPLL,NDUFAF7,PRKD3,QPCT,RMDN2"
TCGA.CK.5914.01A	2	37470959	37872949	32	0.5697	SMALL-GAIN	FOCAL	4	"CDC42EP3,NDUFAF7,PRKD3,QPCT"
TCGA.AG.A00C.01A	2	38177580	38297844	12	0.4474	SMALL-GAIN	FOCAL	2	"CYP1B1,RMDN2"
TCGA.AA.A00F.01A	2	38177580	38301502	13	0.3822	SMALL-GAIN	FOCAL	2	"CYP1B1,RMDN2"
TCGA.AA.A010.01A	2	38239646	38545996	19	0.4589	SMALL-GAIN	FOCAL	3	"ATL2,CYP1B1,RMDN2"
TCGA.AA.3941	2	38274907	38377404	67	0.4837	SMALL-GAIN	FOCAL	2	"CYP1B1,RMDN2"
TCGA.AA.3941	2	38441907	38797373	131	0.4691	SMALL-GAIN	FOCAL	2	"ATL2,HNRNPLL"
TCGA.AA.3850	2	38488486	38797373	114	0.40345	SMALL-GAIN	FOCAL	2	"ATL2,HNRNPLL"
TCGA.AA.3941	2	38808034	38954418	29	0.4325	SMALL-GAIN	FOCAL	2	"GALM,HNRNPLL"
TCGA.AA.A010.01A	2	38826944	38916896	7	0.5919	SMALL-GAIN	FOCAL	2	"GALM,HNRNPLL"
TCGA.AG.3909.01A	2	38893257	38960569	7	0.5899	SMALL-GAIN	FOCAL	1	GALM
TCGA.AA.A00F.01A	2	38972211	38977129	7	0.565	SMALL-GAIN	FOCAL	1	SRSF7
TCGA.AG.A00C.01A	2	38972211	39025400	12	0.4761	SMALL-GAIN	FOCAL	3	"DHX57,GEMIN6,SRSF7"
TCGA.AA.3941	2	38991192	39238394	66	0.4178	SMALL-GAIN	FOCAL	5	"ARHGEF33,DHX57,GEMIN6,MORN2,SOS1"
TCGA.AA.A010.01A	2	39006083	39146501	31	0.3968	SMALL-GAIN	FOCAL	3	"DHX57,GEMIN6,MORN2"
TCGA.AA.A00N.01A	2	39008620	39146501	30	0.5482	SMALL-GAIN	FOCAL	3	"DHX57,GEMIN6,MORN2"
TCGA.AA.A00N.01A	2	39222237	39452938	28	0.4442	SMALL-GAIN	FOCAL	2	"CDKL4,SOS1"
TCGA.CK.5914.01A	2	39262316	39417409	13	0.4412	SMALL-GAIN	FOCAL	2	"CDKL4,SOS1"
TCGA.AA.A00N.01A	2	39494272	39984409	36	0.4744	SMALL-GAIN	FOCAL	3	"MAP4K3,THUMPD2,TMEM178A"
TCGA.CK.5914.01A	2	39509575	39984409	33	0.5303	SMALL-GAIN	FOCAL	3	"MAP4K3,THUMPD2,TMEM178A"
TCGA.AA.3941	2	40341387	40362955	14	0.3832	SMALL-GAIN	FOCAL	1	SLC8A1
TCGA.AA.3941	2	40377083	40383793	15	0.6569	SMALL-GAIN	FOCAL	1	SLC8A1
TCGA.AA.3819	2	40423453	40456842	18	0.4887	SMALL-GAIN	FOCAL	1	SLC8A1
TCGA.CK.5914.01A	2	42174576	42578312	33	0.4316	SMALL-GAIN	FOCAL	4	"C2orf91,COX7A2L,EML4,PKDCC"
TCGA.AG.3891.01A	2	42280362	42284312	4	0.5113	SMALL-GAIN	FOCAL	1	PKDCC
TCGA.AA.A010.01A	2	42472628	42719950	27	0.5615	SMALL-GAIN	FOCAL	3	"COX7A2L,EML4,KCNG3"
TCGA.AG.3891.01A	2	42719950	42836546	4	0.5951	SMALL-GAIN	FOCAL	2	"KCNG3,MTA3"
TCGA.AA.A00N.01A	2	42867293	42997575	20	0.5173	SMALL-GAIN	FOCAL	3	"HAAO,MTA3,OXER1"
TCGA.AA.3979	2	43095987	43299981	105	0.6523	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	2	43232902	43532523	108	0.49355	SMALL-GAIN	FOCAL	2	"THADA,ZFP36L2"
TCGA.AG.3891.01A	2	43458047	43571212	10	0.4315	SMALL-GAIN	FOCAL	1	THADA
TCGA.CK.5914.01A	2	43520021	43813483	27	0.3894	SMALL-GAIN	FOCAL	1	THADA
TCGA.AA.A010.01A	2	43547536	44003872	61	0.3914	SMALL-GAIN	FOCAL	4	"C1GALT1C1L,DYNC2LI1,PLEKHH2,THADA"
TCGA.AA.A00N.01A	2	43571212	43819395	29	0.6684	SMALL-GAIN	FOCAL	1	THADA
TCGA.AA.3850	2	43783293	43859089	27	0.39415	SMALL-GAIN	FOCAL	1	THADA
TCGA.AG.A00C.01A	2	43871791	43924263	7	0.3975	SMALL-GAIN	FOCAL	2	"C1GALT1C1L,PLEKHH2"
TCGA.AA.A00N.01A	2	43926749	44186261	80	0.6367	SMALL-GAIN	FOCAL	5	"ABCG5,ABCG8,DYNC2LI1,LRPPRC,PLEKHH2"
TCGA.AG.3909.01A	2	43931071	44021595	27	0.4489	SMALL-GAIN	FOCAL	2	"DYNC2LI1,PLEKHH2"
TCGA.AA.A00N.01A	2	44428312	44559567	26	0.5955	SMALL-GAIN	FOCAL	3	"PPM1B,PREPL,SLC3A1"
TCGA.AA.3850	2	45099749	45218062	72	0.43255	SMALL-GAIN	FOCAL	1	SIX3
TCGA.AA.3941	2	45861590	46320001	262	0.4158	SMALL-GAIN	FOCAL	1	PRKCE
TCGA.AA.3941	2	46352057	46434582	53	0.4487	SMALL-GAIN	FOCAL	1	PRKCE
TCGA.AG.4009.01A	2	46602792	46609515	8	0.5361	SMALL-GAIN	FOCAL	1	EPAS1
TCGA.AA.A010.01A	2	46808578	47085174	21	0.5319	SMALL-GAIN	FOCAL	4	"CRIPT,PIGF,RHOQ,SOCS5"
TCGA.CK.5914.01A	2	46850891	47300791	37	0.5341	SMALL-GAIN	FOCAL	4	"CRIPT,MCFD2,SOCS5,TTC7A"
TCGA.AG.4009.01A	2	47202062	47300791	17	0.504	SMALL-GAIN	FOCAL	1	TTC7A
TCGA.AA.A00F.01A	2	47378346	47672680	26	0.3952	SMALL-GAIN	FOCAL	4	"C2orf61,CALM2,EPCAM,MSH2"
TCGA.AG.A00C.01A	2	47378346	47672680	24	0.5382	SMALL-GAIN	FOCAL	4	"C2orf61,CALM2,EPCAM,MSH2"
TCGA.AG.A008.01A	2	47387833	47690148	22	0.4313	SMALL-GAIN	FOCAL	3	"CALM2,EPCAM,MSH2"
TCGA.AA.3930.01A	2	47596657	47693780	20	0.4468	SMALL-GAIN	FOCAL	2	"EPCAM,MSH2"
TCGA.AA.3693	2	47671564	48948801	315	0.4406	SMALL-GAIN	FOCAL	10	"FBXO11,FOXN2,GTF2A1L,KCNK12,LHCGR,MSH2,MSH6,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AG.A016.01A	2	48032012	48040892	10	0.4592	SMALL-GAIN	FOCAL	2	"FBXO11,MSH6"
TCGA.AA.A010.01A	2	48045861	48692006	23	0.6263	SMALL-GAIN	FOCAL	3	"FBXO11,FOXN2,PPP1R21"
TCGA.AA.3693	2	48955682	49189920	112	0.431	SMALL-GAIN	FOCAL	3	"FSHR,LHCGR,STON1-GTF2A1L"
TCGA.AA.3864	2	49354068	49359675	6	0.4474	SMALL-GAIN	FOCAL	1	FSHR
TCGA.F5.6811.01A	2	50288240	50552910	6	0.5079	SMALL-GAIN	FOCAL	1	NRXN1
TCGA.AA.3509.01A	2	50692529	53992527	31	0.6024	SMALL-GAIN	FOCAL	3	"ASB3,GPR75-ASB3,NRXN1"
TCGA.AZ.4684.01A	2	50692529	53992527	31	0.6183	SMALL-GAIN	FOCAL	3	"ASB3,GPR75-ASB3,NRXN1"
TCGA.AA.A00Q.01A	2	50722991	50848284	5	0.6665	SMALL-GAIN	FOCAL	1	NRXN1
TCGA.F5.6811.01A	2	50736926	51006488	5	0.5768	SMALL-GAIN	FOCAL	1	NRXN1
TCGA.CK.5914.01A	2	51253458	53956548	11	0.4553	SMALL-GAIN	FOCAL	3	"ASB3,GPR75-ASB3,NRXN1"
TCGA.AA.A010.01A	2	54128440	54159764	18	0.4561	SMALL-GAIN	FOCAL	1	PSME4
TCGA.AA.A010.01A	2	54175509	55214600	97	0.508	SMALL-GAIN	FOCAL	7	"ACYP2,C2orf73,EML6,PSME4,RTN4,SPTBN1,TSPYL6"
TCGA.CK.5914.01A	2	55040318	55436500	59	0.5959	SMALL-GAIN	FOCAL	3	"CLHC1,EML6,RTN4"
TCGA.AA.3850	2	55127490	55182439	32	0.52995	SMALL-GAIN	FOCAL	1	EML6
TCGA.AA.A02K.01A	2	55155409	55189608	9	0.6617	SMALL-GAIN	FOCAL	1	EML6
TCGA.AG.A01W.01A	2	55376237	55403147	14	0.3983	SMALL-GAIN	FOCAL	1	CLHC1
TCGA.AA.A010.01A	2	55489404	55844239	60	0.4202	SMALL-GAIN	FOCAL	4	"CCDC88A,CFAP36,MTIF2,SMEK2"
TCGA.AA.A00N.01A	2	55528976	55844239	53	0.5691	SMALL-GAIN	FOCAL	3	"CCDC88A,CFAP36,SMEK2"
TCGA.AG.A00C.01A	2	55871735	55910848	16	0.4622	SMALL-GAIN	FOCAL	1	PNPT1
TCGA.AZ.4684.01A	2	55920751	56599430	15	0.3883	SMALL-GAIN	FOCAL	3	"CCDC85A,EFEMP1,PNPT1"
TCGA.CK.5914.01A	2	55920751	56611389	18	0.6005	SMALL-GAIN	FOCAL	3	"CCDC85A,EFEMP1,PNPT1"
TCGA.AA.A00N.01A	2	55920751	58449030	42	0.4395	SMALL-GAIN	FOCAL	5	"CCDC85A,EFEMP1,FANCL,PNPT1,VRK2"
TCGA.AG.A01W.01A	2	55955564	58321805	39	0.4781	SMALL-GAIN	FOCAL	3	"CCDC85A,EFEMP1,VRK2"
TCGA.AA.A010.01A	2	56144748	60695825	45	0.4765	SMALL-GAIN	FOCAL	5	"BCL11A,CCDC85A,EFEMP1,FANCL,VRK2"
TCGA.CM.6165.01A	2	61237905	61244839	3	0.5325	SMALL-GAIN	FOCAL	2	"PEX13,PUS10"
TCGA.AG.A00C.01A	2	61272819	61315261	9	0.5147	SMALL-GAIN	FOCAL	2	"KIAA1841,PEX13"
TCGA.AG.A01W.01A	2	61358766	61363748	4	0.6765	SMALL-GAIN	FOCAL	1	KIAA1841
TCGA.AG.A00C.01A	2	61411802	61419979	8	0.5337	SMALL-GAIN	FOCAL	2	"AHSA2,USP34"
TCGA.CK.5914.01A	2	61433104	61605441	50	0.4529	SMALL-GAIN	FOCAL	1	USP34
TCGA.AA.3967.01A	2	61705928	62069235	29	0.5003	SMALL-GAIN	FOCAL	2	"FAM161A,XPO1"
TCGA.AG.3906.01A	2	61712852	61760855	18	0.4741	SMALL-GAIN	FOCAL	1	XPO1
TCGA.CK.5914.01A	2	63169853	63816083	40	0.5786	SMALL-GAIN	FOCAL	4	"EHBP1,MDH1,OTX1,WDPCP"
TCGA.AA.A00N.01A	2	64112711	64126571	8	0.434	SMALL-GAIN	FOCAL	2	"UGP2,VPS54"
TCGA.CK.5914.01A	2	64118207	64335309	28	0.5742	SMALL-GAIN	FOCAL	3	"PELI1,UGP2,VPS54"
TCGA.AG.3584	2	64160384	65641977	485	0.439	SMALL-GAIN	FOCAL	10	"ACTR2,AFTPH,CEP68,LGALSL,PELI1,RAB1A,SERTAD2,SLC1A4,SPRED2,VPS54"
TCGA.AA.A00N.01A	2	64169548	64331823	15	0.5532	SMALL-GAIN	FOCAL	2	"PELI1,VPS54"
TCGA.AA.3941	2	64401059	65716615	441	0.3958	SMALL-GAIN	FOCAL	8	"ACTR2,AFTPH,CEP68,LGALSL,RAB1A,SERTAD2,SLC1A4,SPRED2"
TCGA.CK.5914.01A	2	64794649	65659009	48	0.4465	SMALL-GAIN	FOCAL	7	"ACTR2,AFTPH,CEP68,RAB1A,SERTAD2,SLC1A4,SPRED2"
TCGA.AG.A00C.01A	2	65318068	65466936	4	0.5218	SMALL-GAIN	FOCAL	2	"ACTR2,RAB1A"
TCGA.AG.A00C.01A	2	65543817	66669987	11	0.5809	SMALL-GAIN	FOCAL	2	"MEIS1,SPRED2"
TCGA.AA.3941	2	65718814	65869240	73	0.4125	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	2	65896164	65927911	22	0.40845	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	67479789	68126923	9	0.3945	SMALL-GAIN	FOCAL	1	ETAA1
TCGA.AA.A00N.01A	2	68269981	68622795	41	0.5541	SMALL-GAIN	FOCAL	6	"C1D,CNRIP1,PLEK,PNO1,PPP3R1,WDR92"
TCGA.AG.3909.01A	2	68273408	68622795	33	0.4002	SMALL-GAIN	FOCAL	6	"C1D,CNRIP1,PLEK,PNO1,PPP3R1,WDR92"
TCGA.AG.3909.01A	2	69014930	69590628	57	0.4904	SMALL-GAIN	FOCAL	6	"ANTXR1,ARHGAP25,BMP10,GFPT1,GKN1,GKN2"
TCGA.AG.3909.01A	2	69664423	70039757	29	0.5294	SMALL-GAIN	FOCAL	3	"AAK1,ANXA4,NFU1"
TCGA.AA.A00Q.01A	2	69741556	69769608	4	0.5844	SMALL-GAIN	FOCAL	1	AAK1
TCGA.AA.3982	2	70273706	70560558	53	0.5474	SMALL-GAIN	FOCAL	6	"C2orf42,FAM136A,PCBP1,PCYOX1,SNRPG,TIA1"
TCGA.AG.3906.01A	2	70314835	70463182	20	0.475	SMALL-GAIN	FOCAL	3	"C2orf42,PCBP1,TIA1"
TCGA.AA.A00F.01A	2	70486445	70529004	12	0.4261	SMALL-GAIN	FOCAL	3	"FAM136A,PCYOX1,SNRPG"
TCGA.CK.5914.01A	2	70915118	70933307	7	0.5863	SMALL-GAIN	FOCAL	1	ADD2
TCGA.AA.A00N.01A	2	71017508	71170716	18	0.6515	SMALL-GAIN	FOCAL	5	"ATP6V1B1,CD207,CLEC4F,FIGLA,VAX2"
TCGA.AG.3909.01A	2	71036354	71170716	16	0.5959	SMALL-GAIN	FOCAL	4	"ATP6V1B1,CD207,CLEC4F,VAX2"
TCGA.AA.A00F.01A	2	71365583	71376321	6	0.4354	SMALL-GAIN	FOCAL	1	MPHOSPH10
TCGA.AA.A010.01A	2	71429540	71607593	10	0.4322	SMALL-GAIN	FOCAL	2	"PAIP2B,ZNF638"
TCGA.AA.A010.01A	2	71645661	71913507	63	0.4783	SMALL-GAIN	FOCAL	2	"DYSF,ZNF638"
TCGA.CK.5914.01A	2	71681073	71742702	9	0.462	SMALL-GAIN	FOCAL	1	DYSF
TCGA.AG.3909.01A	2	71797722	72968401	49	0.4822	SMALL-GAIN	FOCAL	3	"CYP26B1,DYSF,EXOC6B"
TCGA.AA.A00N.01A	2	71797722	73052910	55	0.492	SMALL-GAIN	FOCAL	3	"CYP26B1,DYSF,EXOC6B"
TCGA.CK.5914.01A	2	71829823	73429773	74	0.4243	SMALL-GAIN	FOCAL	8	"CYP26B1,DYSF,EMX1,EXOC6B,NOTO,RAB11FIP5,SFXN5,SPR"
TCGA.AA.A01Q.01A	2	71838335	71895859	11	0.3983	SMALL-GAIN	FOCAL	1	DYSF
TCGA.AA.3930.01A	2	73435490	73450502	12	0.5708	SMALL-GAIN	FOCAL	2	"NOTO,SMYD5"
TCGA.AA.A00F.01A	2	73447741	73451952	8	0.441	SMALL-GAIN	FOCAL	1	SMYD5
TCGA.AG.A00C.01A	2	73448231	73493538	29	0.4562	SMALL-GAIN	FOCAL	4	"CCT7,FBXO41,PRADC1,SMYD5"
TCGA.AG.3906.01A	2	73466729	73487840	14	0.5007	SMALL-GAIN	FOCAL	2	"CCT7,FBXO41"
TCGA.CK.5914.01A	2	73487840	74006949	54	0.408	SMALL-GAIN	FOCAL	7	"ALMS1,DUSP11,EGR4,FBXO41,NAT8,NAT8B,TPRKB"
TCGA.AG.4009.01A	2	74057973	74074477	4	0.4872	SMALL-GAIN	FOCAL	1	STAMBP
TCGA.CK.5914.01A	2	74074477	74320639	30	0.5606	SMALL-GAIN	FOCAL	4	"ACTG2,DGUOK,STAMBP,TET3"
TCGA.AA.A00Q.01A	2	74273399	74328511	4	0.4414	SMALL-GAIN	FOCAL	1	TET3
TCGA.AA.A00F.01A	2	74327480	74372267	4	0.5628	SMALL-GAIN	FOCAL	2	"BOLA3,TET3"
TCGA.AA.A00N.01A	2	74448513	74593370	34	0.5918	SMALL-GAIN	FOCAL	2	"DCTN1,SLC4A5"
TCGA.AG.4009.01A	2	74448513	74607071	47	0.4772	SMALL-GAIN	FOCAL	2	"DCTN1,SLC4A5"
TCGA.AG.A01W.01A	2	74494954	74505993	8	0.5311	SMALL-GAIN	FOCAL	1	SLC4A5
TCGA.AA.A00Q.01A	2	74710146	74720019	5	0.5205	SMALL-GAIN	FOCAL	2	"CCDC142,TTC31"
TCGA.AA.A00N.01A	2	74900537	75874178	36	0.5237	SMALL-GAIN	FOCAL	6	"EVA1A,HK2,MRPL19,POLE4,SEMA4F,TACR1"
TCGA.AG.A00C.01A	2	75879258	75882183	4	0.4313	SMALL-GAIN	FOCAL	1	MRPL19
TCGA.DM.A1HB	2	79556992	79599198	27	0.5055	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00Q.01A	2	80801241	81421174	3	0.6702	SMALL-GAIN	FOCAL	1	CTNNA2
TCGA.AA.A00Q.01A	2	84848326	85097328	8	0.4818	SMALL-GAIN	FOCAL	2	"DNAH6,TRABD2A"
TCGA.AA.3850	2	85029625	85523275	137	0.41155	SMALL-GAIN	FOCAL	5	"DNAH6,KCMF1,TCF7L1,TMSB10,TRABD2A"
TCGA.AA.3967.01A	2	85549788	85598511	20	0.3877	SMALL-GAIN	FOCAL	3	"ELMOD3,RETSAT,TGOLN2"
TCGA.AG.A00C.01A	2	85768148	85868088	45	0.4216	SMALL-GAIN	FOCAL	8	"C2orf68,GGCX,MAT2A,RNF181,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AA.3967.01A	2	85768148	85894178	58	0.3891	SMALL-GAIN	FOCAL	9	"C2orf68,GGCX,MAT2A,RNF181,SFTPB,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.CK.5914.01A	2	85857796	85925626	23	0.6364	SMALL-GAIN	FOCAL	3	"GNLY,SFTPB,USP39"
TCGA.AA.A010.01A	2	85857796	86509232	117	0.6118	SMALL-GAIN	FOCAL	10	"ATOH8,GNLY,IMMT,MRPL35,POLR1A,PTCD3,REEP1,SFTPB,ST3GAL5,USP39"
TCGA.AG.4009.01A	2	85890462	85894760	7	0.48	SMALL-GAIN	FOCAL	1	SFTPB
TCGA.AG.4009.01A	2	86254494	86304979	23	0.4688	SMALL-GAIN	FOCAL	1	POLR1A
TCGA.AG.3909.01A	2	86297164	86400755	45	0.4013	SMALL-GAIN	FOCAL	3	"IMMT,POLR1A,PTCD3"
TCGA.AG.3909.01A	2	86691129	86737429	18	0.3981	SMALL-GAIN	FOCAL	3	"CHMP3,KDM3A,RNF103-CHMP3"
TCGA.AZ.4684.01A	2	86717963	86847426	12	0.6245	SMALL-GAIN	FOCAL	4	"CHMP3,KDM3A,RNF103,RNF103-CHMP3"
TCGA.CK.5914.01A	2	86947739	86998669	8	0.6388	SMALL-GAIN	FOCAL	2	"RMND5A,RNF103-CHMP3"
TCGA.CK.5914.01A	2	87071963	88402524	26	0.3906	SMALL-GAIN	FOCAL	7	"CD8B,KRCC1,PLGLB1,PLGLB2,RGPD1,RGPD2,SMYD1"
TCGA.DC.6160.01A	2	88977862	94902939	74	0.5258	SMALL-GAIN	FOCAL	1	RPIA
TCGA.AG.3906.01A	2	89384626	89399320	3	0.5848	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	95077414	95304020	22	0.3899	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00F.01A	2	95773909	95846807	9	0.3839	SMALL-GAIN	FOCAL	3	"MRPS5,ZNF2,ZNF514"
TCGA.AA.A010.01A	2	95940282	95976094	22	0.4554	SMALL-GAIN	FOCAL	2	"KCNIP3,PROM2"
TCGA.AA.A00N.01A	2	95940282	96261903	38	0.4319	SMALL-GAIN	FOCAL	5	"FAHD2A,KCNIP3,PROM2,TRIM43,TRIM43B"
TCGA.AG.3906.01A	2	96789549	96809510	8	0.602	SMALL-GAIN	FOCAL	2	"ASTL,DUSP2"
TCGA.AA.A01F.01A	2	96809510	96858761	7	0.4781	SMALL-GAIN	FOCAL	2	"DUSP2,STARD7"
TCGA.AA.A010.01A	2	96873854	96932062	6	0.6637	SMALL-GAIN	FOCAL	3	"CIAO1,STARD7,TMEM127"
TCGA.AA.A01F.01A	2	96934148	96959006	28	0.4164	SMALL-GAIN	FOCAL	2	"CIAO1,SNRNP200"
TCGA.AA.A01Q.01A	2	97267338	97405564	16	0.4297	SMALL-GAIN	FOCAL	3	"FER1L5,KANSL3,LMAN2L"
TCGA.AA.A00Q.01A	2	97271005	97334471	6	0.5115	SMALL-GAIN	FOCAL	2	"FER1L5,KANSL3"
TCGA.CK.5914.01A	2	97338767	97405564	34	0.388	SMALL-GAIN	FOCAL	2	"FER1L5,LMAN2L"
TCGA.AA.A01F.01A	2	97482378	97498221	8	0.5234	SMALL-GAIN	FOCAL	1	CNNM3
TCGA.AA.A00N.01A	2	97559633	97637627	12	0.5724	SMALL-GAIN	FOCAL	1	FAM178B
TCGA.AA.A00N.01A	2	98127609	98173338	13	0.6122	SMALL-GAIN	FOCAL	1	ANKRD36B
TCGA.AG.3909.01A	2	98127609	98173338	13	0.3906	SMALL-GAIN	FOCAL	1	ANKRD36B
TCGA.AA.A010.01A	2	98340492	99294745	127	0.625	SMALL-GAIN	FOCAL	8	"CNGA3,COA5,INPP4A,MGAT4A,TMEM131,UNC50,VWA3B,ZAP70"
TCGA.AA.A00N.01A	2	98779292	99182465	53	0.5878	SMALL-GAIN	FOCAL	3	"CNGA3,INPP4A,VWA3B"
TCGA.AG.3909.01A	2	98779292	99182465	48	0.5315	SMALL-GAIN	FOCAL	3	"CNGA3,INPP4A,VWA3B"
TCGA.CK.5914.01A	2	98779292	99182465	53	0.4055	SMALL-GAIN	FOCAL	3	"CNGA3,INPP4A,VWA3B"
TCGA.AG.3909.01A	2	99790328	99912026	17	0.5731	SMALL-GAIN	FOCAL	4	"LYG1,LYG2,MITD1,MRPL30"
TCGA.AA.A00F.01A	2	99936098	99949441	4	0.4527	SMALL-GAIN	FOCAL	1	TXNDC9
TCGA.AA.A00N.01A	2	99976657	100176773	48	0.5613	SMALL-GAIN	FOCAL	3	"AFF3,EIF5B,REV1"
TCGA.AA.A00N.01A	2	100217857	100910649	18	0.6157	SMALL-GAIN	FOCAL	2	"AFF3,LONRF2"
TCGA.AA.A010.01A	2	100247375	100627898	11	0.4074	SMALL-GAIN	FOCAL	1	AFF3
TCGA.AG.3909.01A	2	101627370	101706664	18	0.4016	SMALL-GAIN	FOCAL	2	"RPL31,TBC1D8"
TCGA.CK.5914.01A	2	101653942	101869376	9	0.5948	SMALL-GAIN	FOCAL	2	"CNOT11,TBC1D8"
TCGA.AG.3909.01A	2	101967338	102626006	37	0.4295	SMALL-GAIN	FOCAL	4	"CREG2,IL1R2,MAP4K4,RFX8"
TCGA.CK.5914.01A	2	102407112	102626006	32	0.6771	SMALL-GAIN	FOCAL	2	"IL1R2,MAP4K4"
TCGA.AG.3909.01A	2	103003272	103311441	33	0.3793	SMALL-GAIN	FOCAL	4	"IL18R1,IL18RAP,SLC9A2,SLC9A4"
TCGA.DM.A288	2	103368824	103539430	32	0.4502	SMALL-GAIN	FOCAL	1	TMEM182
TCGA.AG.3909.01A	2	106710440	107423097	29	0.4028	SMALL-GAIN	FOCAL	3	"RGPD3,ST6GAL2,UXS1"
TCGA.CK.5914.01A	2	107050675	108476250	15	0.4945	SMALL-GAIN	FOCAL	3	"RGPD3,RGPD4,ST6GAL2"
TCGA.AA.3811	2	107781837	107790085	15	0.405	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	2	108470999	108507151	12	0.4017	SMALL-GAIN	FOCAL	1	RGPD4
TCGA.AA.A010.01A	2	108499136	109352663	67	0.5039	SMALL-GAIN	FOCAL	8	"GCC2,LIMS1,RANBP2,RGPD4,SLC5A7,SULT1C2,SULT1C3,SULT1C4"
TCGA.CK.5914.01A	2	108604565	109363154	66	0.4038	SMALL-GAIN	FOCAL	7	"GCC2,LIMS1,RANBP2,SLC5A7,SULT1C2,SULT1C3,SULT1C4"
TCGA.AG.3909.01A	2	108863634	109003729	20	0.5611	SMALL-GAIN	FOCAL	3	"SULT1C2,SULT1C3,SULT1C4"
TCGA.AA.A010.01A	2	111428037	111806729	21	0.5781	SMALL-GAIN	FOCAL	2	"ACOXL,BUB1"
TCGA.AA.A010.01A	2	111918940	112813122	61	0.6082	SMALL-GAIN	FOCAL	4	"ANAPC1,BCL2L11,MERTK,TMEM87B"
TCGA.AA.A00N.01A	2	112656244	112785888	20	0.4987	SMALL-GAIN	FOCAL	1	MERTK
TCGA.AG.3909.01A	2	112686645	112767478	14	0.5219	SMALL-GAIN	FOCAL	1	MERTK
TCGA.AA.A00N.01A	2	113067450	113147616	13	0.5355	SMALL-GAIN	FOCAL	3	"RGPD5,RGPD8,ZC3H6"
TCGA.AA.A00F.01A	2	113404355	113410241	4	0.5507	SMALL-GAIN	FOCAL	1	SLC20A1
TCGA.AA.A010.01A	2	113479049	113875504	63	0.6579	SMALL-GAIN	FOCAL	10	"CKAP2L,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37"
TCGA.AG.3909.01A	2	113590899	113676097	9	0.6031	SMALL-GAIN	FOCAL	2	"IL1B,IL37"
TCGA.AA.A01F.01A	2	113939982	113958686	14	0.4315	SMALL-GAIN	FOCAL	1	PSD4
TCGA.AA.3509.01A	2	114399303	118582103	60	0.586	SMALL-GAIN	FOCAL	5	"ACTR3,DDX18,DPP10,RABL2A,SLC35F5"
TCGA.AZ.4684.01A	2	114399303	118582103	60	0.6251	SMALL-GAIN	FOCAL	5	"ACTR3,DDX18,DPP10,RABL2A,SLC35F5"
TCGA.DM.A28M.01A	2	114480629	116594015	49	0.3817	SMALL-GAIN	FOCAL	3	"ACTR3,DPP10,SLC35F5"
TCGA.AA.A00N.01A	2	114513875	118572299	39	0.4683	SMALL-GAIN	FOCAL	4	"ACTR3,DDX18,DPP10,SLC35F5"
TCGA.AG.3909.01A	2	115200305	116520068	11	0.396	SMALL-GAIN	FOCAL	1	DPP10
TCGA.AG.3909.01A	2	118677878	118732722	16	0.6042	SMALL-GAIN	FOCAL	1	CCDC93
TCGA.CK.5914.01A	2	119749934	120125094	20	0.4716	SMALL-GAIN	FOCAL	5	"C1QL2,C2orf76,DBI,MARCO,STEAP3"
TCGA.AG.4009.01A	2	120003488	120128251	14	0.4203	SMALL-GAIN	FOCAL	3	"C2orf76,DBI,STEAP3"
TCGA.AG.3909.01A	2	120012212	120125094	9	0.3811	SMALL-GAIN	FOCAL	3	"C2orf76,DBI,STEAP3"
TCGA.AA.A00N.01A	2	120634819	122363295	117	0.5557	SMALL-GAIN	FOCAL	8	"CLASP1,EPB41L5,GLI2,INHBB,PTPN4,RALB,TFCP2L1,TMEM185B"
TCGA.AA.3850	2	120748069	122934650	592	0.38785	SMALL-GAIN	FOCAL	9	"CLASP1,EPB41L5,GLI2,INHBB,NIFK,RALB,TFCP2L1,TMEM185B,TSN"
TCGA.AA.3982	2	121649896	121886825	110	0.4991	SMALL-GAIN	FOCAL	1	GLI2
TCGA.AA.3529	2	121688691	121727752	26	0.4914	SMALL-GAIN	FOCAL	1	GLI2
TCGA.AG.3891.01A	2	121727947	121746122	9	0.5012	SMALL-GAIN	FOCAL	1	GLI2
TCGA.AA.3982	2	121897173	122103860	84	0.4345	SMALL-GAIN	FOCAL	2	"CLASP1,TFCP2L1"
TCGA.AG.3891.01A	2	122485268	122493142	5	0.4621	SMALL-GAIN	FOCAL	1	NIFK
TCGA.AG.3906.01A	2	122485268	122518935	10	0.4677	SMALL-GAIN	FOCAL	2	"NIFK,TSN"
TCGA.AG.A00C.01A	2	122485268	122522660	12	0.6297	SMALL-GAIN	FOCAL	2	"NIFK,TSN"
TCGA.AG.3909.01A	2	124979230	127453503	26	0.6246	SMALL-GAIN	FOCAL	2	"CNTNAP5,GYPC"
TCGA.CK.5914.01A	2	128051062	128338283	48	0.4053	SMALL-GAIN	FOCAL	5	"ERCC3,IWS1,MAP3K2,MYO7B,PROC"
TCGA.AA.A00N.01A	2	128238573	128255666	9	0.5881	SMALL-GAIN	FOCAL	1	IWS1
TCGA.AG.A00C.01A	2	128525723	128631391	12	0.5933	SMALL-GAIN	FOCAL	3	"AMMECR1L,POLR2D,WDR33"
TCGA.CK.5914.01A	2	128699533	130869561	71	0.5207	SMALL-GAIN	FOCAL	5	"HS6ST1,POTEF,RAB6C,SAP130,UGGT1"
TCGA.AG.A008.01A	2	130921895	131130683	28	0.4125	SMALL-GAIN	FOCAL	6	"CCDC115,IMP4,MZT2B,PTPN18,SMPD4,TUBA3E"
TCGA.AG.3906.01A	2	130925004	130953700	10	0.6049	SMALL-GAIN	FOCAL	3	"MZT2B,SMPD4,TUBA3E"
TCGA.A6.3808.01A	2	131096652	131132150	20	0.5287	SMALL-GAIN	FOCAL	3	"CCDC115,IMP4,PTPN18"
TCGA.AG.3909.01A	2	133483158	135309564	39	0.5838	SMALL-GAIN	FOCAL	3	"MGAT5,NCKAP5,TMEM163"
TCGA.AA.A00N.01A	2	133483158	135630012	48	0.6624	SMALL-GAIN	FOCAL	4	"ACMSD,MGAT5,NCKAP5,TMEM163"
TCGA.AA.A00N.01A	2	135883698	135988035	22	0.5039	SMALL-GAIN	FOCAL	2	"RAB3GAP1,ZRANB3"
TCGA.CK.5914.01A	2	135907897	135976600	11	0.6153	SMALL-GAIN	FOCAL	2	"RAB3GAP1,ZRANB3"
TCGA.AA.A00N.01A	2	136071032	136362362	9	0.4493	SMALL-GAIN	FOCAL	2	"R3HDM1,ZRANB3"
TCGA.CK.5914.01A	2	136071032	136437756	25	0.4803	SMALL-GAIN	FOCAL	2	"R3HDM1,ZRANB3"
TCGA.AG.3909.01A	2	136545915	136574911	14	0.6767	SMALL-GAIN	FOCAL	1	LCT
TCGA.CK.5914.01A	2	136545915	136623685	31	0.4647	SMALL-GAIN	FOCAL	2	"LCT,MCM6"
TCGA.CK.5914.01A	2	136633782	136718929	14	0.6485	SMALL-GAIN	FOCAL	2	"DARS,MCM6"
TCGA.AA.A00N.01A	2	136633782	136742925	17	0.5545	SMALL-GAIN	FOCAL	2	"DARS,MCM6"
TCGA.AA.3850	2	137164417	137217608	26	0.38655	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	137639702	139428441	44	0.6376	SMALL-GAIN	FOCAL	4	"HNMT,NXPH2,SPOPL,THSD7B"
TCGA.G4.6295	2	138237037	138446790	62	0.6751	SMALL-GAIN	FOCAL	1	THSD7B
TCGA.CK.5914.01A	2	141201868	141709368	45	0.5403	SMALL-GAIN	FOCAL	1	LRP1B
TCGA.AA.A010.01A	2	141214985	141272190	11	0.5975	SMALL-GAIN	FOCAL	1	LRP1B
TCGA.AG.A01W.01A	2	148936575	149349629	24	0.4492	SMALL-GAIN	FOCAL	1	MBD5
TCGA.AA.A00Q.01A	2	149542197	149866610	5	0.6105	SMALL-GAIN	FOCAL	2	"EPC2,KIF5C"
TCGA.AG.A01W.01A	2	149769967	151835437	25	0.5163	SMALL-GAIN	FOCAL	5	"KIF5C,LYPD6,LYPD6B,MMADHC,RND3"
TCGA.AA.A00N.01A	2	151857774	151904105	4	0.5335	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	152006612	152034434	20	0.4164	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	2	152062362	152256576	117	0.572	SMALL-GAIN	FOCAL	3	"NMI,RBM43,TNFAIP6"
TCGA.AA.A00F.01A	2	152127190	152139346	6	0.5393	SMALL-GAIN	FOCAL	1	NMI
TCGA.AA.3850	2	152203407	152306896	21	0.62625	SMALL-GAIN	FOCAL	2	"RIF1,TNFAIP6"
TCGA.AA.A00N.01A	2	152214126	152266898	7	0.5525	SMALL-GAIN	FOCAL	2	"RIF1,TNFAIP6"
TCGA.DM.A28M.01A	2	152324467	152359812	21	0.4639	SMALL-GAIN	FOCAL	2	"NEB,RIF1"
TCGA.AG.3909.01A	2	152331354	152586073	133	0.508	SMALL-GAIN	FOCAL	2	"NEB,RIF1"
TCGA.AA.A010.01A	2	152487575	152502595	8	0.597	SMALL-GAIN	FOCAL	1	NEB
TCGA.AA.A01C.01A	2	152496365	152544759	33	0.4314	SMALL-GAIN	FOCAL	1	NEB
TCGA.CK.5914.01A	2	152527490	152717178	39	0.3893	SMALL-GAIN	FOCAL	3	"ARL5A,CACNB4,NEB"
TCGA.AA.A010.01A	2	152552055	152580722	9	0.6377	SMALL-GAIN	FOCAL	1	NEB
TCGA.CK.5914.01A	2	152739748	155711190	89	0.3814	SMALL-GAIN	FOCAL	9	"ARL6IP6,CACNB4,FMNL2,GALNT13,KCNJ3,LOC100144595,PRPF40A,RPRM,STAM2"
TCGA.AA.A00N.01A	2	153032055	153551000	47	0.5673	SMALL-GAIN	FOCAL	3	"FMNL2,PRPF40A,STAM2"
TCGA.AA.A00N.01A	2	153616254	155711190	18	0.6233	SMALL-GAIN	FOCAL	5	"ARL6IP6,GALNT13,KCNJ3,LOC100144595,RPRM"
TCGA.AG.A00C.01A	2	157182249	157185788	5	0.4716	SMALL-GAIN	FOCAL	1	NR4A2
TCGA.AA.A01C.01A	2	158630578	159107287	17	0.6731	SMALL-GAIN	FOCAL	3	"ACVR1,CCDC148,UPP2"
TCGA.AA.A010.01A	2	159459498	160031447	32	0.4664	SMALL-GAIN	FOCAL	3	"DAPL1,PKP4,TANC1"
TCGA.AG.A01W.01A	2	159751613	159954056	39	0.6519	SMALL-GAIN	FOCAL	1	TANC1
TCGA.AA.A01C.01A	2	160193403	160261309	18	0.5525	SMALL-GAIN	FOCAL	1	BAZ2B
TCGA.AA.A00N.01A	2	160688134	160735733	19	0.6621	SMALL-GAIN	FOCAL	2	"LY75,LY75-CD302"
TCGA.AA.A01F.01A	2	160728920	160755159	11	0.4552	SMALL-GAIN	FOCAL	2	"LY75,LY75-CD302"
TCGA.AG.A01W.01A	2	160760076	162587433	80	0.5198	SMALL-GAIN	FOCAL	9	"ITGB6,LY75,LY75-CD302,PLA2R1,PSMD14,RBMS1,SLC4A10,TANK,TBR1"
TCGA.AA.A00N.01A	2	160761050	160803901	5	0.5189	SMALL-GAIN	FOCAL	3	"LY75,LY75-CD302,PLA2R1"
TCGA.AA.A00N.01A	2	160869743	160885322	6	0.5529	SMALL-GAIN	FOCAL	1	PLA2R1
TCGA.AA.A00N.01A	2	161157105	162072836	13	0.518	SMALL-GAIN	FOCAL	2	"RBMS1,TANK"
TCGA.CK.5914.01A	2	162480956	162868265	32	0.6055	SMALL-GAIN	FOCAL	2	"DPP4,SLC4A10"
TCGA.AA.A00Q.01A	2	162696272	162813520	3	0.415	SMALL-GAIN	FOCAL	1	SLC4A10
TCGA.CK.5914.01A	2	162881265	163066388	29	0.6335	SMALL-GAIN	FOCAL	3	"DPP4,FAP,GCG"
TCGA.AG.3909.01A	2	162930387	163059341	19	0.413	SMALL-GAIN	FOCAL	3	"DPP4,FAP,GCG"
TCGA.F5.6811.01A	2	162949413	163082464	10	0.4147	SMALL-GAIN	FOCAL	2	"FAP,GCG"
TCGA.AA.A00N.01A	2	162999777	163075541	23	0.5719	SMALL-GAIN	FOCAL	2	"FAP,GCG"
TCGA.CK.4948.01B	2	163212868	163279788	13	0.4522	SMALL-GAIN	FOCAL	2	"GCA,KCNH7"
TCGA.DY.A1DC	2	163703416	163867001	50	0.5834	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	2	165811094	166210665	44	0.4127	SMALL-GAIN	FOCAL	3	"SCN2A,SCN3A,SLC38A11"
TCGA.F5.6811.01A	2	166555989	166580314	10	0.5679	SMALL-GAIN	FOCAL	0	None
TCGA.CK.4948.01B	2	166847743	166870204	9	0.511	SMALL-GAIN	FOCAL	1	SCN1A
TCGA.AA.A010.01A	2	167141023	167167998	11	0.651	SMALL-GAIN	FOCAL	1	SCN9A
TCGA.AA.A00N.01A	2	168103517	169487426	25	0.4147	SMALL-GAIN	FOCAL	4	"B3GALT1,CERS6,STK39,XIRP2"
TCGA.AA.A00N.01A	2	169622100	170022405	74	0.638	SMALL-GAIN	FOCAL	7	"ABCB11,CERS6,DHRS9,G6PC2,LRP2,NOSTRIN,SPC25"
TCGA.AG.A01W.01A	2	169802817	170074494	37	0.6203	SMALL-GAIN	FOCAL	3	"ABCB11,DHRS9,LRP2"
TCGA.AA.A01C.01A	2	169836329	170145485	85	0.4405	SMALL-GAIN	FOCAL	3	"ABCB11,DHRS9,LRP2"
TCGA.AA.A00N.01A	2	170062513	170082893	10	0.4509	SMALL-GAIN	FOCAL	1	LRP2
TCGA.AG.A00C.01A	2	170338704	170371037	11	0.3972	SMALL-GAIN	FOCAL	2	"BBS5,KLHL41"
TCGA.AA.3967.01A	2	170338704	170387815	17	0.4616	SMALL-GAIN	FOCAL	3	"BBS5,FASTKD1,KLHL41"
TCGA.CK.5914.01A	2	170377324	170402738	10	0.3843	SMALL-GAIN	FOCAL	2	"FASTKD1,KLHL41"
TCGA.AA.A00N.01A	2	170440825	170550708	20	0.4639	SMALL-GAIN	FOCAL	2	"CCDC173,PPIG"
TCGA.CK.5914.01A	2	170440825	170550708	20	0.603	SMALL-GAIN	FOCAL	2	"CCDC173,PPIG"
TCGA.AA.A02K.01A	2	170557431	170728725	20	0.5148	SMALL-GAIN	FOCAL	6	"KLHL23,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,SSB,UBR3"
TCGA.AA.A00F.01A	2	170557495	170680967	18	0.4419	SMALL-GAIN	FOCAL	5	"KLHL23,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,SSB"
TCGA.AG.A008.01A	2	170591473	170678404	16	0.4928	SMALL-GAIN	FOCAL	4	"KLHL23,METTL5,PHOSPHO2-KLHL23,SSB"
TCGA.AG.3906.01A	2	172690423	172749641	7	0.6498	SMALL-GAIN	FOCAL	1	SLC25A12
TCGA.AG.A00C.01A	2	172935587	172966173	9	0.464	SMALL-GAIN	FOCAL	3	"DLX1,DLX2,METAP1D"
TCGA.AA.A00N.01A	2	172966826	173420831	24	0.4968	SMALL-GAIN	FOCAL	3	"DLX2,ITGA6,PDK1"
TCGA.CK.5914.01A	2	172966826	173420831	24	0.6613	SMALL-GAIN	FOCAL	3	"DLX2,ITGA6,PDK1"
TCGA.AG.3909.01A	2	173330230	173368802	21	0.4041	SMALL-GAIN	FOCAL	1	ITGA6
TCGA.AA.A00N.01A	2	173435427	174123390	51	0.6008	SMALL-GAIN	FOCAL	3	"PDK1,RAPGEF4,ZAK"
TCGA.AG.3909.01A	2	173450959	174125739	50	0.4424	SMALL-GAIN	FOCAL	3	"PDK1,RAPGEF4,ZAK"
TCGA.CK.5914.01A	2	174034478	174130741	17	0.5801	SMALL-GAIN	FOCAL	1	ZAK
TCGA.CK.5914.01A	2	174774617	175006501	15	0.4037	SMALL-GAIN	FOCAL	2	"OLA1,SP3"
TCGA.AG.3906.01A	2	174819553	174946635	6	0.5699	SMALL-GAIN	FOCAL	2	"OLA1,SP3"
TCGA.AG.A01W.01A	2	174921565	174977041	13	0.4137	SMALL-GAIN	FOCAL	1	OLA1
TCGA.AG.A01W.01A	2	175381838	175670371	14	0.581	SMALL-GAIN	FOCAL	3	"CHN1,CHRNA1,WIPF1"
TCGA.AA.A00N.01A	2	175432552	175939290	31	0.4574	SMALL-GAIN	FOCAL	4	"ATF2,CHN1,CHRNA1,WIPF1"
TCGA.AG.3909.01A	2	175450175	175945351	24	0.4396	SMALL-GAIN	FOCAL	4	"ATF2,CHN1,CHRNA1,WIPF1"
TCGA.AG.3906.01A	2	175957752	175986134	7	0.4456	SMALL-GAIN	FOCAL	1	ATF2
TCGA.AA.A00N.01A	2	176001057	176844506	14	0.5412	SMALL-GAIN	FOCAL	3	"ATF2,ATP5G3,KIAA1715"
TCGA.AG.3906.01A	2	176995058	177017324	5	0.6351	SMALL-GAIN	FOCAL	2	"HOXD4,HOXD8"
TCGA.CK.4948.01B	2	177134280	177195263	10	0.5003	SMALL-GAIN	FOCAL	1	MTX2
TCGA.AA.A00N.01A	2	177161525	178077496	11	0.6775	SMALL-GAIN	FOCAL	2	"HNRNPA3,MTX2"
TCGA.AG.A00C.01A	2	178080219	178098691	9	0.4607	SMALL-GAIN	FOCAL	2	"HNRNPA3,NFE2L2"
TCGA.CK.5914.01A	2	178095481	179300864	83	0.4104	SMALL-GAIN	FOCAL	8	"AGPS,NFE2L2,OSBPL6,PDE11A,PRKRA,RBM45,TTC30A,TTC30B"
TCGA.AA.A00N.01A	2	178740539	178977223	8	0.5604	SMALL-GAIN	FOCAL	2	"PDE11A,RBM45"
TCGA.AG.A01W.01A	2	179058603	179187018	97	0.5699	SMALL-GAIN	FOCAL	1	OSBPL6
TCGA.F5.6811.01A	2	179246566	179253167	12	0.431	SMALL-GAIN	FOCAL	1	OSBPL6
TCGA.AA.A00F.01A	2	179296776	179360175	16	0.4159	SMALL-GAIN	FOCAL	4	"DFNB59,FKBP7,PLEKHA3,PRKRA"
TCGA.AA.A017.01A	2	179358529	179499845	109	0.5791	SMALL-GAIN	FOCAL	2	"PLEKHA3,TTN"
TCGA.AA.A02H.01A	2	179360175	179413617	27	0.5863	SMALL-GAIN	FOCAL	2	"PLEKHA3,TTN"
TCGA.AG.A00H.01A	2	179363918	179408876	22	0.4125	SMALL-GAIN	FOCAL	2	"PLEKHA3,TTN"
TCGA.CK.5914.01A	2	179367031	179402086	14	0.6341	SMALL-GAIN	FOCAL	2	"PLEKHA3,TTN"
TCGA.AA.A00N.01A	2	179391702	179517209	126	0.608	SMALL-GAIN	FOCAL	1	TTN
TCGA.AG.3909.01A	2	179391702	180837855	314	0.4825	SMALL-GAIN	FOCAL	5	"CCDC141,CWC22,SESTD1,TTN,ZNF385B"
TCGA.AA.A00K.01A	2	179392151	179606031	55	0.4743	SMALL-GAIN	FOCAL	1	TTN
TCGA.AG.A023.01A	2	179406038	179538321	117	0.5384	SMALL-GAIN	FOCAL	1	TTN
TCGA.AG.A01J.01A	2	179411769	179489973	73	0.5915	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A02E.01A	2	179414278	179442292	25	0.384	SMALL-GAIN	FOCAL	1	TTN
TCGA.AG.A00H.01A	2	179427390	179484351	53	0.5454	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A02H.01A	2	179429069	179489973	56	0.6461	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.3930.01A	2	179431391	179435581	4	0.6332	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.3939.01A	2	179431391	179443321	10	0.5174	SMALL-GAIN	FOCAL	1	TTN
TCGA.AZ.4684.01A	2	179463901	179505216	43	0.643	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.3509.01A	2	179463901	179534896	66	0.5728	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A02E.01A	2	179494001	179510606	21	0.6145	SMALL-GAIN	FOCAL	1	TTN
TCGA.AG.A01J.01A	2	179501094	179510606	7	0.5674	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A017.01A	2	179504374	179539707	29	0.3826	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A01C.01A	2	179519467	179545755	25	0.461	SMALL-GAIN	FOCAL	1	TTN
TCGA.DM.A28M.01A	2	179531902	179544922	17	0.5837	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.3967.01A	2	179545755	179554195	14	0.5408	SMALL-GAIN	FOCAL	1	TTN
TCGA.DM.A28M.01A	2	179549587	179561774	15	0.5128	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A00N.01A	2	179574256	179596062	32	0.4607	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A017.01A	2	179574256	179650307	74	0.5533	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A01C.01A	2	179591780	179600199	15	0.5608	SMALL-GAIN	FOCAL	1	TTN
TCGA.AA.A01C.01A	2	179631061	179701572	34	0.483	SMALL-GAIN	FOCAL	2	"CCDC141,TTN"
TCGA.AA.A00N.01A	2	182358013	182388110	9	0.5747	SMALL-GAIN	FOCAL	1	ITGA4
TCGA.AG.3909.01A	2	182359406	182468513	28	0.473	SMALL-GAIN	FOCAL	2	"CERKL,ITGA4"
TCGA.AA.A00N.01A	2	182414297	182468513	5	0.4781	SMALL-GAIN	FOCAL	1	CERKL
TCGA.AG.3906.01A	2	182542500	182766471	8	0.416	SMALL-GAIN	FOCAL	2	"NEUROD1,SSFA2"
TCGA.AA.A00F.01A	2	182757263	182766471	6	0.4085	SMALL-GAIN	FOCAL	1	SSFA2
TCGA.AA.A00N.01A	2	182774576	183386965	30	0.5535	SMALL-GAIN	FOCAL	3	"PDE1A,PPP1R1C,SSFA2"
TCGA.CK.5914.01A	2	183604974	185800530	66	0.511	SMALL-GAIN	FOCAL	6	"DNAJC10,DUSP19,FRZB,NCKAP1,NUP35,ZNF804A"
TCGA.CK.4948.01B	2	186669903	186696477	8	0.4381	SMALL-GAIN	FOCAL	1	FSIP2
TCGA.CK.5914.01A	2	187531374	187703709	23	0.6009	SMALL-GAIN	FOCAL	3	"FAM171B,ITGAV,ZSWIM2"
TCGA.EI.6508	2	187570879	187816019	59	0.3989	SMALL-GAIN	FOCAL	2	"FAM171B,ZSWIM2"
TCGA.AG.A00C.01A	2	190530838	190556949	7	0.5337	SMALL-GAIN	FOCAL	2	"ANKAR,ASNSD1"
TCGA.AG.A00C.01A	2	190611065	190670340	13	0.5453	SMALL-GAIN	FOCAL	4	"ANKAR,ORMDL1,OSGEPL1,PMS1"
TCGA.AA.A02K.01A	2	190619890	190647097	5	0.5583	SMALL-GAIN	FOCAL	2	"ORMDL1,OSGEPL1"
TCGA.CK.5914.01A	2	190708663	191064545	15	0.567	SMALL-GAIN	FOCAL	3	"C2orf88,MSTN,PMS1"
TCGA.AA.A00N.01A	2	190708663	191184362	31	0.5271	SMALL-GAIN	FOCAL	4	"C2orf88,HIBCH,MSTN,PMS1"
TCGA.AA.A00N.01A	2	191769703	191855900	28	0.5493	SMALL-GAIN	FOCAL	2	"GLS,STAT1"
TCGA.AG.A00C.01A	2	191855900	191899197	16	0.3863	SMALL-GAIN	FOCAL	2	"STAT1,STAT4"
TCGA.CK.5914.01A	2	191899197	192254978	34	0.391	SMALL-GAIN	FOCAL	2	"MYO1B,STAT4"
TCGA.AA.A00N.01A	2	191905733	192234886	26	0.4502	SMALL-GAIN	FOCAL	2	"MYO1B,STAT4"
TCGA.AG.A00C.01A	2	192254978	192550275	20	0.4437	SMALL-GAIN	FOCAL	2	"MYO1B,NABP1"
TCGA.CK.5914.01A	2	192700717	197750495	186	0.4608	SMALL-GAIN	FOCAL	10	"C2orf66,CCDC150,DNAH7,GTF3C3,HECW2,PGAP1,SDPR,SLC39A10,STK17B,TMEFF2"
TCGA.CK.4948.01B	2	193044263	193056579	3	0.6398	SMALL-GAIN	FOCAL	1	TMEFF2
TCGA.T9.A92H	2	195811733	195900770	35	0.4583	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	2	196544829	196912993	70	0.3887	SMALL-GAIN	FOCAL	2	"DNAH7,SLC39A10"
TCGA.AG.3909.01A	2	197065974	197504409	29	0.5588	SMALL-GAIN	FOCAL	2	"CCDC150,HECW2"
TCGA.DM.A28H	2	197175981	197287957	57	0.3943	SMALL-GAIN	FOCAL	1	HECW2
TCGA.AG.A01W.01A	2	197382166	197672739	44	0.4942	SMALL-GAIN	FOCAL	4	"C2orf66,CCDC150,GTF3C3,HECW2"
TCGA.AA.A00N.01A	2	197832070	197990519	25	0.4631	SMALL-GAIN	FOCAL	1	ANKRD44
TCGA.AG.3909.01A	2	197889859	198318268	39	0.4174	SMALL-GAIN	FOCAL	3	"ANKRD44,COQ10B,SF3B1"
TCGA.AA.3941	2	198075673	198573611	89	0.4903	SMALL-GAIN	FOCAL	9	"ANKRD44,COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,RFTN2,SF3B1"
TCGA.AA.A00N.01A	2	198272685	198283564	6	0.4581	SMALL-GAIN	FOCAL	1	SF3B1
TCGA.AG.3906.01A	2	198324609	198338439	4	0.6749	SMALL-GAIN	FOCAL	1	COQ10B
TCGA.AA.A01C.01A	2	198621105	200801095	27	0.5313	SMALL-GAIN	FOCAL	5	"BOLL,C2orf69,PLCL1,SATB2,TYW5"
TCGA.AG.A01N.01A	2	198640355	200298020	20	0.6748	SMALL-GAIN	FOCAL	3	"BOLL,PLCL1,SATB2"
TCGA.AG.3909.01A	2	198650616	200298020	16	0.5211	SMALL-GAIN	FOCAL	3	"BOLL,PLCL1,SATB2"
TCGA.EI.6508	2	199566856	199682084	52	0.5767	SMALL-GAIN	FOCAL	0	None
TCGA.AH.6544	2	199617825	199653884	22	0.5577	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	201194079	201354842	16	0.6354	SMALL-GAIN	FOCAL	2	"KCTD18,SPATS2L"
TCGA.AG.A01W.01A	2	201232096	201437020	29	0.3797	SMALL-GAIN	FOCAL	3	"KCTD18,SGOL2,SPATS2L"
TCGA.AG.A00C.01A	2	201357863	201399667	7	0.4473	SMALL-GAIN	FOCAL	2	"KCTD18,SGOL2"
TCGA.AZ.4684.01A	2	201440007	201464294	8	0.3861	SMALL-GAIN	FOCAL	2	"AOX1,SGOL2"
TCGA.CK.5914.01A	2	201450796	201534267	33	0.6524	SMALL-GAIN	FOCAL	1	AOX1
TCGA.AA.A01C.01A	2	201462083	201501584	18	0.3976	SMALL-GAIN	FOCAL	1	AOX1
TCGA.AA.A00F.01A	2	201531376	201746076	17	0.4019	SMALL-GAIN	FOCAL	4	"AOX1,BZW1,CLK1,PPIL3"
TCGA.AG.A00C.01A	2	201535336	201736071	22	0.4272	SMALL-GAIN	FOCAL	4	"AOX1,BZW1,CLK1,PPIL3"
TCGA.AA.A010.01A	2	201721355	201784931	24	0.5946	SMALL-GAIN	FOCAL	4	"CLK1,NIF3L1,ORC2,PPIL3"
TCGA.AG.A00C.01A	2	201881705	202028509	15	0.4589	SMALL-GAIN	FOCAL	3	"CFLAR,FAM126B,NDUFB3"
TCGA.AG.3891.01A	2	201950175	202028509	11	0.5177	SMALL-GAIN	FOCAL	2	"CFLAR,NDUFB3"
TCGA.AG.A01W.01A	2	201953521	202138691	38	0.6505	SMALL-GAIN	FOCAL	3	"CASP10,CASP8,CFLAR"
TCGA.AA.A00F.01A	2	201994540	202025168	8	0.5294	SMALL-GAIN	FOCAL	1	CFLAR
TCGA.CK.5914.01A	2	202050464	202265702	46	0.557	SMALL-GAIN	FOCAL	4	"ALS2CR12,CASP10,CASP8,TRAK2"
TCGA.AG.A01L.01A	2	202149487	202195419	10	0.5932	SMALL-GAIN	FOCAL	2	"ALS2CR12,CASP8"
TCGA.AG.A01W.01A	2	202191821	202218129	15	0.6198	SMALL-GAIN	FOCAL	1	ALS2CR12
TCGA.AA.A010.01A	2	202195119	202215963	8	0.6034	SMALL-GAIN	FOCAL	1	ALS2CR12
TCGA.AA.A010.01A	2	202262840	202285087	5	0.6029	SMALL-GAIN	FOCAL	1	TRAK2
TCGA.AG.3909.01A	2	202520892	203168038	89	0.3951	SMALL-GAIN	FOCAL	7	"ALS2,CDK15,FZD7,KIAA2012,MPP4,NOP58,SUMO1"
TCGA.CK.5914.01A	2	202528717	202539862	5	0.4039	SMALL-GAIN	FOCAL	1	MPP4
TCGA.CK.5914.01A	2	203051619	203242144	28	0.4356	SMALL-GAIN	FOCAL	4	"BMPR2,KIAA2012,NOP58,SUMO1"
TCGA.AA.3967.01A	2	203084701	203332213	21	0.5758	SMALL-GAIN	FOCAL	3	"BMPR2,NOP58,SUMO1"
TCGA.AG.3891.01A	2	203139774	203152318	5	0.5312	SMALL-GAIN	FOCAL	1	NOP58
TCGA.AA.3930.01A	2	203167719	203384778	9	0.54	SMALL-GAIN	FOCAL	2	"BMPR2,NOP58"
TCGA.AG.3891.01A	2	203379570	203397260	5	0.4915	SMALL-GAIN	FOCAL	1	BMPR2
TCGA.CK.5914.01A	2	203806563	203848212	14	0.4171	SMALL-GAIN	FOCAL	1	CARF
TCGA.CK.5914.01A	2	203942456	204054967	36	0.3878	SMALL-GAIN	FOCAL	1	NBEAL1
TCGA.AG.A008.01A	2	204036612	204081929	17	0.4093	SMALL-GAIN	FOCAL	1	NBEAL1
TCGA.AG.3909.01A	2	204281643	206927473	81	0.412	SMALL-GAIN	FOCAL	8	"ABI2,CD28,CTLA4,ICOS,INO80D,NRP2,PARD3B,RAPH1"
TCGA.CK.5914.01A	2	204304163	206927473	80	0.6657	SMALL-GAIN	FOCAL	7	"CD28,CTLA4,ICOS,INO80D,NRP2,PARD3B,RAPH1"
TCGA.AA.3850	2	204921551	204935690	6	0.38885	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	2	206476385	207138478	222	0.4148	SMALL-GAIN	FOCAL	6	"EEF1B2,GPR1,INO80D,NDUFS1,NRP2,PARD3B"
TCGA.AG.4009.01A	2	206588462	206656883	13	0.4146	SMALL-GAIN	FOCAL	1	NRP2
TCGA.AG.A00C.01A	2	206927473	207146507	25	0.4366	SMALL-GAIN	FOCAL	5	"EEF1B2,GPR1,INO80D,NDUFS1,ZDBF2"
TCGA.AG.A011.01A	2	206988854	207017107	15	0.4421	SMALL-GAIN	FOCAL	1	NDUFS1
TCGA.AG.A011.01A	2	207027185	207175522	11	0.4106	SMALL-GAIN	FOCAL	3	"EEF1B2,GPR1,ZDBF2"
TCGA.AG.3909.01A	2	207146507	208442202	92	0.451	SMALL-GAIN	FOCAL	9	"ADAM23,CPO,CREB1,DYTN,FASTKD2,KLF7,LOC200726,MDH1B,ZDBF2"
TCGA.CK.5914.01A	2	207345908	207653499	59	0.4599	SMALL-GAIN	FOCAL	5	"ADAM23,DYTN,FASTKD2,LOC200726,MDH1B"
TCGA.AA.A010.01A	2	207395540	207437783	14	0.6628	SMALL-GAIN	FOCAL	1	ADAM23
TCGA.CK.5914.01A	2	208030154	208442202	9	0.5328	SMALL-GAIN	FOCAL	2	"CREB1,KLF7"
TCGA.AG.A011.01A	2	208602051	208632966	8	0.3808	SMALL-GAIN	FOCAL	2	"CCNYL1,FZD5"
TCGA.AG.A01W.01A	2	208759846	209066194	62	0.4979	SMALL-GAIN	FOCAL	6	"C2orf80,CRYGA,CRYGB,CRYGC,CRYGD,PLEKHM3"
TCGA.AG.3906.01A	2	209007325	209049639	11	0.6089	SMALL-GAIN	FOCAL	3	"C2orf80,CRYGA,CRYGB"
TCGA.AG.3909.01A	2	209007325	209051600	12	0.5176	SMALL-GAIN	FOCAL	3	"C2orf80,CRYGA,CRYGB"
TCGA.AG.3891.01A	2	209030439	209051600	8	0.3895	SMALL-GAIN	FOCAL	1	C2orf80
TCGA.CK.5914.01A	2	209142214	209204687	27	0.6378	SMALL-GAIN	FOCAL	1	PIKFYVE
TCGA.AA.A00N.01A	2	209153401	209200490	20	0.6731	SMALL-GAIN	FOCAL	1	PIKFYVE
TCGA.AA.A00F.01A	2	209212544	209219867	8	0.3993	SMALL-GAIN	FOCAL	1	PIKFYVE
TCGA.AA.A010.01A	2	209271745	210517854	13	0.4093	SMALL-GAIN	FOCAL	2	"MAP2,PTH2R"
TCGA.CK.5914.01A	2	209315406	210636744	25	0.5974	SMALL-GAIN	FOCAL	3	"MAP2,PTH2R,UNC80"
TCGA.AG.A01W.01A	2	210226172	213629752	200	0.5232	SMALL-GAIN	FOCAL	9	"ACADL,CPS1,ERBB4,KANSL1L,LANCL1,MAP2,MYL1,RPE,UNC80"
TCGA.AA.A010.01A	2	210658402	210683680	6	0.5733	SMALL-GAIN	FOCAL	1	UNC80
TCGA.AA.A00Q.01A	2	210682489	210837736	9	0.4318	SMALL-GAIN	FOCAL	1	UNC80
TCGA.F5.6811.01A	2	211163027	211185045	13	0.4838	SMALL-GAIN	FOCAL	1	MYL1
TCGA.AG.A01W.01A	2	214435407	215529584	32	0.4975	SMALL-GAIN	FOCAL	2	"SPAG16,VWC2L"
TCGA.AG.3909.01A	2	215797310	215976270	50	0.4381	SMALL-GAIN	FOCAL	1	ABCA12
TCGA.AG.A01W.01A	2	215970047	216616836	28	0.6193	SMALL-GAIN	FOCAL	3	"ABCA12,ATIC,FN1"
TCGA.AG.3909.01A	2	216214252	216274619	32	0.5526	SMALL-GAIN	FOCAL	2	"ATIC,FN1"
TCGA.AA.A02K.01A	2	216283919	216292865	7	0.4685	SMALL-GAIN	FOCAL	1	FN1
TCGA.AG.A01W.01A	2	216996531	217011324	5	0.6142	SMALL-GAIN	FOCAL	1	XRCC5
TCGA.AA.A00N.01A	2	217498205	218762479	39	0.5609	SMALL-GAIN	FOCAL	4	"IGFBP2,IGFBP5,TNP1,TNS1"
TCGA.AG.4009.01A	2	218672717	218939796	30	0.4891	SMALL-GAIN	FOCAL	2	"RUFY4,TNS1"
TCGA.AA.A01Q.01A	2	218939796	219082130	7	0.5781	SMALL-GAIN	FOCAL	4	"ARPC2,CXCR1,CXCR2,RUFY4"
TCGA.AG.A01W.01A	2	218967028	218977238	7	0.6205	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3815.01A	2	219205382	219222698	9	0.4297	SMALL-GAIN	FOCAL	2	"CATIP,PNKD"
TCGA.AA.3930.01A	2	219208165	219255876	22	0.6438	SMALL-GAIN	FOCAL	3	"CATIP,PNKD,SLC11A1"
TCGA.AG.3906.01A	2	219222698	219255876	17	0.6129	SMALL-GAIN	FOCAL	2	"CATIP,SLC11A1"
TCGA.AG.A015.01A	2	219258783	219268973	6	0.3849	SMALL-GAIN	FOCAL	2	"CTDSP1,SLC11A1"
TCGA.AA.A010.01A	2	219290301	219486146	49	0.3806	SMALL-GAIN	FOCAL	4	"PLCD4,RQCD1,USP37,VIL1"
TCGA.AA.3930.01A	2	219293967	219301800	10	0.4468	SMALL-GAIN	FOCAL	1	VIL1
TCGA.AG.3909.01A	2	219305393	219362702	17	0.4845	SMALL-GAIN	FOCAL	2	"USP37,VIL1"
TCGA.AG.A015.01A	2	219505339	219513741	6	0.3814	SMALL-GAIN	FOCAL	1	ZNF142
TCGA.AG.3906.01A	2	219692247	219825311	11	0.565	SMALL-GAIN	FOCAL	4	"CDK5R2,PRKAG3,WNT10A,WNT6"
TCGA.CK.5914.01A	2	219875230	219897152	19	0.4031	SMALL-GAIN	FOCAL	1	CCDC108
TCGA.AG.3906.01A	2	220097754	220107166	15	0.5068	SMALL-GAIN	FOCAL	2	"ANKZF1,GLB1L"
TCGA.AG.A01L.01A	2	220156129	220161735	5	0.4475	SMALL-GAIN	FOCAL	1	PTPRN
TCGA.AG.A01L.01A	2	220168419	220315819	23	0.4092	SMALL-GAIN	FOCAL	5	"DES,DNPEP,PTPRN,RESP18,SPEG"
TCGA.AG.A01W.01A	2	220184524	220202990	11	0.5501	SMALL-GAIN	FOCAL	1	RESP18
TCGA.AA.3815.01A	2	220439459	220470639	7	0.4725	SMALL-GAIN	FOCAL	2	"INHA,STK11IP"
TCGA.AF.3914.01A	2	220462543	220480729	18	0.5631	SMALL-GAIN	FOCAL	1	STK11IP
TCGA.AG.3909.01A	2	220462543	223096780	57	0.5794	SMALL-GAIN	FOCAL	4	"EPHA4,PAX3,SLC4A3,STK11IP"
TCGA.AA.A02K.01A	2	220466660	220493078	18	0.5945	SMALL-GAIN	FOCAL	2	"SLC4A3,STK11IP"
TCGA.AG.3891.01A	2	220493100	220506315	19	0.4331	SMALL-GAIN	FOCAL	1	SLC4A3
TCGA.AG.A00C.01A	2	223158362	223168572	5	0.4715	SMALL-GAIN	FOCAL	2	"CCDC140,PAX3"
TCGA.AG.3909.01A	2	224844974	226378049	77	0.4609	SMALL-GAIN	FOCAL	5	"CUL3,DOCK10,FAM124B,NYAP2,SERPINE2"
TCGA.A6.3808.01A	2	224849438	227964271	127	0.5998	SMALL-GAIN	FOCAL	8	"COL4A4,CUL3,DOCK10,FAM124B,IRS1,NYAP2,RHBDD1,SERPINE2"
TCGA.AG.A01W.01A	2	227600822	227675702	27	0.5229	SMALL-GAIN	FOCAL	1	IRS1
TCGA.AG.3909.01A	2	227924830	228169654	70	0.4906	SMALL-GAIN	FOCAL	2	"COL4A3,COL4A4"
TCGA.CK.5914.01A	2	227964271	228172409	63	0.5917	SMALL-GAIN	FOCAL	2	"COL4A3,COL4A4"
TCGA.AG.3906.01A	2	228108958	228120663	12	0.4144	SMALL-GAIN	FOCAL	1	COL4A3
TCGA.AA.A00N.01A	2	228147065	228167704	14	0.4992	SMALL-GAIN	FOCAL	1	COL4A3
TCGA.AA.A00N.01A	2	228228440	228419085	20	0.5152	SMALL-GAIN	FOCAL	2	"AGFG1,TM4SF20"
TCGA.AG.3909.01A	2	228678564	230456244	44	0.4941	SMALL-GAIN	FOCAL	5	"CCL20,DAW1,DNER,PID1,SPHKAP"
TCGA.AA.3867	2	229325524	229338700	11	0.4464	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	2	230167720	230211260	25	0.45005	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	230641993	230683033	26	0.5758	SMALL-GAIN	FOCAL	1	TRIP12
TCGA.AA.A010.01A	2	230653475	230668688	13	0.5794	SMALL-GAIN	FOCAL	1	TRIP12
TCGA.AA.A010.01A	2	230695424	231042821	24	0.5287	SMALL-GAIN	FOCAL	4	"FBXO36,SLC16A14,SP110,TRIP12"
TCGA.AG.3909.01A	2	231035299	231150409	36	0.6569	SMALL-GAIN	FOCAL	2	"SP110,SP140"
TCGA.AA.A00N.01A	2	231311476	231624670	28	0.3868	SMALL-GAIN	FOCAL	2	"CAB39,SP100"
TCGA.AG.3909.01A	2	231403941	231624670	6	0.4596	SMALL-GAIN	FOCAL	2	"CAB39,SP100"
TCGA.AA.A02E.01A	2	231931577	232320674	48	0.6311	SMALL-GAIN	FOCAL	5	"ARMC9,B3GNT7,HTR2B,NCL,PSMD1"
TCGA.CK.5914.01A	2	231936876	232209648	43	0.5457	SMALL-GAIN	FOCAL	3	"ARMC9,HTR2B,PSMD1"
TCGA.AA.3967.01A	2	232028297	232660779	60	0.3841	SMALL-GAIN	FOCAL	9	"ARMC9,B3GNT7,C2orf57,COPS7B,NCL,NMUR1,PDE6D,PSMD1,PTMA"
TCGA.AA.A010.01A	2	232091402	232209648	17	0.6746	SMALL-GAIN	FOCAL	1	ARMC9
TCGA.AA.A00N.01A	2	232126967	232209648	12	0.5523	SMALL-GAIN	FOCAL	1	ARMC9
TCGA.AG.3909.01A	2	232135648	232209648	9	0.5443	SMALL-GAIN	FOCAL	1	ARMC9
TCGA.AG.A00C.01A	2	232319852	232378168	15	0.6232	SMALL-GAIN	FOCAL	1	NCL
TCGA.AG.A00C.01A	2	232653274	232672155	7	0.6667	SMALL-GAIN	FOCAL	1	COPS7B
TCGA.AA.A00N.01A	2	232672155	233194474	21	0.55	SMALL-GAIN	FOCAL	3	"COPS7B,DIS3L2,NPPC"
TCGA.AG.3909.01A	2	232672155	233194474	16	0.3789	SMALL-GAIN	FOCAL	3	"COPS7B,DIS3L2,NPPC"
TCGA.AA.3941	2	233051508	233418060	90	0.5261	SMALL-GAIN	FOCAL	10	"ALPI,ALPP,ALPPL2,CHRND,CHRNG,DIS3L2,ECEL1,EIF4E2,PRSS56,TIGD1"
TCGA.AM.5820	2	233172880	233418060	55	0.4541	SMALL-GAIN	FOCAL	10	"ALPI,ALPP,ALPPL2,CHRND,CHRNG,DIS3L2,ECEL1,EIF4E2,PRSS56,TIGD1"
TCGA.G5.6641	2	233211860	233306835	22	0.406	SMALL-GAIN	FOCAL	2	"ALPP,ALPPL2"
TCGA.AG.A00C.01A	2	233244915	233322228	11	0.5526	SMALL-GAIN	FOCAL	3	"ALPI,ALPP,ALPPL2"
TCGA.CK.5914.01A	2	233431529	233704517	33	0.5938	SMALL-GAIN	FOCAL	4	"EFHD1,EIF4E2,GIGYF2,KCNJ13"
TCGA.AM.5820	2	233494991	233531233	14	0.4493	SMALL-GAIN	FOCAL	1	EFHD1
TCGA.CK.5914.01A	2	233834913	234247262	58	0.6655	SMALL-GAIN	FOCAL	5	"ATG16L1,INPP5D,NEU2,NGEF,SAG"
TCGA.AA.3930.01A	2	234093024	234255424	41	0.3919	SMALL-GAIN	FOCAL	3	"ATG16L1,INPP5D,SAG"
TCGA.AG.3909.01A	2	234249016	234255424	4	0.4458	SMALL-GAIN	FOCAL	1	SAG
TCGA.AA.3941	2	234963082	237801294	1084	0.4423	SMALL-GAIN	FOCAL	8	"ACKR3,AGAP1,ARL4C,ASB18,GBX2,IQCA1,SH3BP4,SPP2"
TCGA.AA.A01S	2	235945878	236180957	134	0.49865	SMALL-GAIN	FOCAL	1	SH3BP4
TCGA.AA.A010.01A	2	237233322	237998455	29	0.6705	SMALL-GAIN	FOCAL	3	"ACKR3,COPS8,IQCA1"
TCGA.F5.6812	2	237728401	237736231	7	0.6064	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	2	238002681	238330681	47	0.5138	SMALL-GAIN	FOCAL	2	"COL6A3,COPS8"
TCGA.AA.A00N.01A	2	238165710	238617139	77	0.3808	SMALL-GAIN	FOCAL	5	"COL6A3,LRRFIP1,MLPH,PRLH,RAB17"
TCGA.AG.3909.01A	2	238233346	238263460	19	0.558	SMALL-GAIN	FOCAL	1	COL6A3
TCGA.AA.A010.01A	2	238242046	238257203	12	0.6348	SMALL-GAIN	FOCAL	1	COL6A3
TCGA.AG.A01W.01A	2	238390344	238500289	15	0.5343	SMALL-GAIN	FOCAL	3	"MLPH,PRLH,RAB17"
TCGA.AG.3906.01A	2	239079135	239253086	39	0.571	SMALL-GAIN	FOCAL	4	"HES6,ILKAP,PER2,TRAF3IP1"
TCGA.AA.A01S	2	239231476	239588886	128	0.50815	SMALL-GAIN	FOCAL	2	"ASB1,TRAF3IP1"
TCGA.AG.A015.01A	2	241494235	241537254	12	0.4231	SMALL-GAIN	FOCAL	4	"ANKMY1,CAPN10,DUSP28,RNPEPL1"
TCGA.AG.3906.01A	2	241496560	241515935	4	0.6705	SMALL-GAIN	FOCAL	3	"ANKMY1,DUSP28,RNPEPL1"
TCGA.AG.4009.01A	2	241689799	241709017	6	0.5151	SMALL-GAIN	FOCAL	1	KIF1A
TCGA.AG.A01W.01A	2	242029363	242463492	79	0.5546	SMALL-GAIN	FOCAL	9	"ANO7,FARP2,HDLBP,MTERF4,PASK,PPP1R7,SEPT2,SNED1,STK25"
TCGA.AG.3906.01A	2	242155460	242283128	33	0.4123	SMALL-GAIN	FOCAL	3	"ANO7,HDLBP,SEPT2"
TCGA.AA.3930.01A	2	242169537	242404823	52	0.4005	SMALL-GAIN	FOCAL	3	"FARP2,HDLBP,SEPT2"
TCGA.AA.A010.01A	2	242312501	242407513	18	0.5617	SMALL-GAIN	FOCAL	1	FARP2
TCGA.AG.3906.01A	2	242572285	242625142	12	0.3815	SMALL-GAIN	FOCAL	3	"ATG4B,DTYMK,THAP4"
TCGA.AG.3891.01A	2	242619613	242681816	10	0.6344	SMALL-GAIN	FOCAL	3	"D2HGDH,DTYMK,ING5"
TCGA.AG.A00C.01A	2	242625142	242689519	12	0.5479	SMALL-GAIN	FOCAL	3	"D2HGDH,DTYMK,ING5"
TCGA.AA.A02K.01A	2	242689555	242814819	20	0.5134	SMALL-GAIN	FOCAL	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AU.3779	2	243001372	243048759	5	0.6127	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DG	2	243001372	243048759	5	0.413	SMALL-GAIN	FOCAL	0	None
TCGA.D5.5539	2	243014629	243048759	2	0.5639	SMALL-GAIN	FOCAL	0	None
TCGA.AH.6897	2	243034518	243048759	2	0.6265	SMALL-GAIN	FOCAL	0	None
TCGA.F4.6704	3	70894	73722	5	0.6522	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A1HA	3	70894	528531	279	0.4397	SMALL-GAIN	FOCAL	1	CHL1
TCGA.AA.A00N.01A	3	447161	3143324	52	0.4367	SMALL-GAIN	FOCAL	4	"CHL1,CNTN4,CNTN6,IL5RA"
TCGA.CK.5914.01A	3	3067774	3111852	12	0.512	SMALL-GAIN	FOCAL	2	"CNTN4,IL5RA"
TCGA.AG.A01W.01A	3	3163067	3171375	8	0.5138	SMALL-GAIN	FOCAL	1	TRNT1
TCGA.AA.A00F.01A	3	3209267	3216810	4	0.6573	SMALL-GAIN	FOCAL	1	CRBN
TCGA.AA.A00N.01A	3	3221242	4345037	6	0.5414	SMALL-GAIN	FOCAL	3	"CRBN,LRRN1,SETMAR"
TCGA.AG.3909.01A	3	3221242	4345037	6	0.6252	SMALL-GAIN	FOCAL	3	"CRBN,LRRN1,SETMAR"
TCGA.CK.5914.01A	3	3221242	4887765	75	0.3829	SMALL-GAIN	FOCAL	5	"CRBN,ITPR1,LRRN1,SETMAR,SUMF1"
TCGA.AA.3982	3	4345765	4404086	30	0.4932	SMALL-GAIN	FOCAL	2	"SETMAR,SUMF1"
TCGA.AA.A010.01A	3	4403776	5164104	69	0.5395	SMALL-GAIN	FOCAL	4	"ARL8B,BHLHE40,ITPR1,SUMF1"
TCGA.AA.3941	3	4446836	4593481	84	0.409	SMALL-GAIN	FOCAL	2	"ITPR1,SUMF1"
TCGA.AA.3982	3	4458250	4593481	77	0.4722	SMALL-GAIN	FOCAL	2	"ITPR1,SUMF1"
TCGA.AH.6897	3	4486302	4515218	15	0.4948	SMALL-GAIN	FOCAL	1	SUMF1
TCGA.AG.3909.01A	3	4562645	4887765	54	0.6567	SMALL-GAIN	FOCAL	1	ITPR1
TCGA.AA.3941	3	4605371	5180450	289	0.4273	SMALL-GAIN	FOCAL	3	"ARL8B,BHLHE40,ITPR1"
TCGA.AA.3982	3	4605371	5316225	332	0.4148	SMALL-GAIN	FOCAL	4	"ARL8B,BHLHE40,EDEM1,ITPR1"
TCGA.AA.A00Q.01A	3	4687014	4856698	11	0.4014	SMALL-GAIN	FOCAL	1	ITPR1
TCGA.CK.5914.01A	3	5257461	9290535	67	0.4553	SMALL-GAIN	FOCAL	8	"CAV3,EDEM1,GRM7,LMCD1,OXTR,RAD18,SRGAP3,SSUH2"
TCGA.AA.3941	3	5428774	5442643	16	0.5206	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	3	5464640	5469656	5	0.6709	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	3	7131500	7136323	3	0.4989	SMALL-GAIN	FOCAL	1	GRM7
TCGA.AA.A010.01A	3	9783662	9932350	58	0.4529	SMALL-GAIN	FOCAL	10	"ARPC4,ARPC4-TTLL3,BRPF1,CAMK1,CIDEC,JAGN1,OGG1,RPUSD3,TADA3,TTLL3"
TCGA.AG.A00C.01A	3	9911554	10005703	38	0.4479	SMALL-GAIN	FOCAL	7	"CIDEC,CRELD1,EMC3,IL17RC,IL17RE,JAGN1,PRRT3"
TCGA.AG.A00C.01A	3	10049039	10076367	6	0.4859	SMALL-GAIN	FOCAL	2	"FANCD2,LOC401052"
TCGA.AG.A00C.01A	3	10094024	10242006	34	0.4439	SMALL-GAIN	FOCAL	5	"BRK1,FANCD2,FANCD2OS,IRAK2,VHL"
TCGA.AG.3909.01A	3	10206594	10267987	9	0.4856	SMALL-GAIN	FOCAL	1	IRAK2
TCGA.AG.3909.01A	3	10311764	10353522	13	0.6528	SMALL-GAIN	FOCAL	3	"GHRL,SEC13,TATDN2"
TCGA.AM.5820	3	14160254	14187698	17	0.6262	SMALL-GAIN	FOCAL	3	"CHCHD4,TMEM43,XPC"
TCGA.AG.4009.01A	3	14518664	14564468	19	0.493	SMALL-GAIN	FOCAL	2	"GRIP2,SLC6A6"
TCGA.AG.3909.01A	3	14567327	15076138	59	0.6684	SMALL-GAIN	FOCAL	5	"C3orf20,CCDC174,FGD5,GRIP2,NR2C2"
TCGA.AA.A00Q.01A	3	14814264	14941839	5	0.5717	SMALL-GAIN	FOCAL	2	"C3orf20,FGD5"
TCGA.AA.A00N.01A	3	14974045	15076138	13	0.4776	SMALL-GAIN	FOCAL	2	"FGD5,NR2C2"
TCGA.AA.A00N.01A	3	15271924	15624347	58	0.5658	SMALL-GAIN	FOCAL	6	"CAPN7,COLQ,EAF1,HACL1,METTL6,SH3BP5"
TCGA.AG.3909.01A	3	15288787	15621395	46	0.541	SMALL-GAIN	FOCAL	6	"CAPN7,COLQ,EAF1,HACL1,METTL6,SH3BP5"
TCGA.AA.A010.01A	3	15298309	15737593	69	0.5787	SMALL-GAIN	FOCAL	7	"ANKRD28,BTD,COLQ,EAF1,HACL1,METTL6,SH3BP5"
TCGA.AG.3909.01A	3	15643293	16475336	58	0.5015	SMALL-GAIN	FOCAL	7	"ANKRD28,BTD,DPH3,GALNT15,HACL1,OXNAD1,RFTN1"
TCGA.AG.A01W.01A	3	15692359	15701691	6	0.5779	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	3	15711725	15793191	23	0.6342	SMALL-GAIN	FOCAL	1	ANKRD28
TCGA.AA.A00L.01A	3	16633510	16639907	5	0.4854	SMALL-GAIN	FOCAL	1	DAZL
TCGA.AA.3972	3	17150737	18197534	198	0.5135	SMALL-GAIN	FOCAL	2	"LOC339862,TBC1D5"
TCGA.AA.A00N.01A	3	19295134	23631187	69	0.3968	SMALL-GAIN	FOCAL	8	"EFHB,KAT2B,KCNH8,PP2D1,RAB5A,SGOL1,UBE2E2,ZNF385D"
TCGA.AA.3972	3	19447210	20023796	119	0.528	SMALL-GAIN	FOCAL	3	"EFHB,KCNH8,RAB5A"
TCGA.AA.3972	3	20999819	21024654	5	0.4022	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	3	23690401	24085165	99	0.47135	SMALL-GAIN	FOCAL	4	"NKIRAS1,NR1D2,RPL15,UBE2E1"
TCGA.AG.A00C.01A	3	23848710	23952251	8	0.4337	SMALL-GAIN	FOCAL	2	"NKIRAS1,UBE2E1"
TCGA.AA.A00F.01A	3	23848710	24018676	17	0.5234	SMALL-GAIN	FOCAL	4	"NKIRAS1,NR1D2,RPL15,UBE2E1"
TCGA.AA.A00N.01A	3	24006421	25781021	59	0.4947	SMALL-GAIN	FOCAL	5	"NGLY1,NR1D2,RARB,THRB,TOP2B"
TCGA.CK.5914.01A	3	24009325	25824704	62	0.3854	SMALL-GAIN	FOCAL	5	"NGLY1,NR1D2,RARB,THRB,TOP2B"
TCGA.AA.3509.01A	3	25775335	27762885	73	0.6076	SMALL-GAIN	FOCAL	6	"EOMES,LRRC3B,NEK10,NGLY1,OXSM,SLC4A7"
TCGA.CK.5914.01A	3	26751155	27297728	13	0.4108	SMALL-GAIN	FOCAL	2	"LRRC3B,NEK10"
TCGA.AG.3893	3	27118446	27125596	16	0.4982	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3898	3	27118446	27125596	16	0.5127	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4008	3	27118446	27127802	20	0.5144	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01Q.01A	3	27472759	27758619	8	0.4657	SMALL-GAIN	FOCAL	2	"EOMES,SLC4A7"
TCGA.AA.3972	3	27679282	29790263	806	0.4412	SMALL-GAIN	FOCAL	5	"AZI2,CMC1,EOMES,RBMS3,ZCWPW2"
TCGA.AG.3906.01A	3	27758619	27761625	4	0.5007	SMALL-GAIN	FOCAL	1	EOMES
TCGA.CK.5914.01A	3	28283196	28373799	8	0.6191	SMALL-GAIN	FOCAL	2	"AZI2,CMC1"
TCGA.AG.3909.01A	3	28454589	31871510	64	0.4474	SMALL-GAIN	FOCAL	6	"GADL1,OSBPL10,RBMS3,STT3B,TGFBR2,ZCWPW2"
TCGA.CK.5914.01A	3	28533545	31871510	67	0.5411	SMALL-GAIN	FOCAL	6	"GADL1,OSBPL10,RBMS3,STT3B,TGFBR2,ZCWPW2"
TCGA.AG.3909.01A	3	33183822	33558441	38	0.5111	SMALL-GAIN	FOCAL	5	"CLASP2,CRTAP,FBXL2,SUSD5,UBP1"
TCGA.AA.A00N.01A	3	33194192	35756848	99	0.5282	SMALL-GAIN	FOCAL	6	"ARPP21,CLASP2,FBXL2,PDCD6IP,SUSD5,UBP1"
TCGA.AA.A010.01A	3	33540069	33907795	56	0.4126	SMALL-GAIN	FOCAL	2	"CLASP2,PDCD6IP"
TCGA.AZ.4684.01A	3	33614550	36547234	68	0.4011	SMALL-GAIN	FOCAL	4	"ARPP21,CLASP2,PDCD6IP,STAC"
TCGA.AG.3909.01A	3	33896628	37284980	98	0.5009	SMALL-GAIN	FOCAL	9	"ARPP21,DCLK3,EPM2AIP1,GOLGA4,LRRFIP2,MLH1,PDCD6IP,STAC,TRANK1"
TCGA.AA.A00F.01A	3	36778659	37042396	11	0.4675	SMALL-GAIN	FOCAL	4	"DCLK3,EPM2AIP1,MLH1,TRANK1"
TCGA.AG.3891.01A	3	37038055	37058945	8	0.4784	SMALL-GAIN	FOCAL	1	MLH1
TCGA.AZ.4684.01A	3	37107251	37162918	17	0.48	SMALL-GAIN	FOCAL	1	LRRFIP2
TCGA.AG.3909.01A	3	37356859	37988496	47	0.5857	SMALL-GAIN	FOCAL	4	"C3orf35,CTDSPL,GOLGA4,ITGA9"
TCGA.AA.A010.01A	3	37818834	38080679	41	0.3795	SMALL-GAIN	FOCAL	4	"CTDSPL,ITGA9,PLCD1,VILL"
TCGA.AA.3982	3	38026651	38401676	69	0.5805	SMALL-GAIN	FOCAL	9	"ACAA1,DLEC1,MYD88,OXSR1,PLCD1,SLC22A13,SLC22A14,VILL,XYLB"
TCGA.AG.3906.01A	3	38080679	38105275	6	0.634	SMALL-GAIN	FOCAL	1	DLEC1
TCGA.AA.A00Q.01A	3	38138961	38163530	4	0.5963	SMALL-GAIN	FOCAL	1	DLEC1
TCGA.AG.3909.01A	3	38232180	38294269	16	0.4276	SMALL-GAIN	FOCAL	1	OXSR1
TCGA.AA.A00N.01A	3	38240172	38294269	15	0.5041	SMALL-GAIN	FOCAL	1	OXSR1
TCGA.AG.3909.01A	3	38347481	38357763	9	0.4863	SMALL-GAIN	FOCAL	1	SLC22A14
TCGA.AA.A010.01A	3	38537812	38601596	13	0.464	SMALL-GAIN	FOCAL	2	"EXOG,SCN5A"
TCGA.AG.A01W.01A	3	38572105	38593116	8	0.6481	SMALL-GAIN	FOCAL	1	SCN5A
TCGA.AA.A00Q.01A	3	38591770	38640359	11	0.4597	SMALL-GAIN	FOCAL	1	SCN5A
TCGA.AG.3611.01A	3	38595733	38640359	8	0.4632	SMALL-GAIN	FOCAL	1	SCN5A
TCGA.AM.5820	3	38619311	38684465	38	0.5614	SMALL-GAIN	FOCAL	1	SCN5A
TCGA.AG.3909.01A	3	38663837	38968252	54	0.5868	SMALL-GAIN	FOCAL	3	"SCN10A,SCN11A,SCN5A"
TCGA.CK.5914.01A	3	38674509	38966867	51	0.5427	SMALL-GAIN	FOCAL	3	"SCN10A,SCN11A,SCN5A"
TCGA.AG.A01W.01A	3	39114693	39127307	11	0.5193	SMALL-GAIN	FOCAL	1	WDR48
TCGA.AG.3909.01A	3	39306896	39425162	4	0.5466	SMALL-GAIN	FOCAL	3	"CCR8,CX3CR1,SLC25A38"
TCGA.AG.A00C.01A	3	39432895	39453711	9	0.586	SMALL-GAIN	FOCAL	2	"RPSA,SLC25A38"
TCGA.AG.3909.01A	3	39942270	40299550	15	0.6444	SMALL-GAIN	FOCAL	1	MYRIP
TCGA.CK.5914.01A	3	40085493	40351362	15	0.5858	SMALL-GAIN	FOCAL	2	"EIF1B,MYRIP"
TCGA.CK.5914.01A	3	40442338	40498762	8	0.6521	SMALL-GAIN	FOCAL	1	ENTPD3
TCGA.AG.3909.01A	3	40453296	40468736	6	0.4931	SMALL-GAIN	FOCAL	1	ENTPD3
TCGA.AA.A00N.01A	3	40453296	40498762	7	0.4773	SMALL-GAIN	FOCAL	1	ENTPD3
TCGA.AG.3611.01A	3	40519375	40529240	6	0.5477	SMALL-GAIN	FOCAL	1	ZNF619
TCGA.AA.A00N.01A	3	41268697	42572907	69	0.4791	SMALL-GAIN	FOCAL	6	"CCK,CTNNB1,LYZL4,TRAK1,ULK4,VIPR1"
TCGA.AA.A010.01A	3	41939918	42590031	47	0.6146	SMALL-GAIN	FOCAL	6	"CCK,LYZL4,SEC22C,TRAK1,ULK4,VIPR1"
TCGA.AG.A01W.01A	3	42674812	42713279	16	0.3952	SMALL-GAIN	FOCAL	2	"NKTR,ZBTB47"
TCGA.AG.3909.01A	3	42738274	42794025	18	0.4114	SMALL-GAIN	FOCAL	2	"CCDC13,HHATL"
TCGA.AG.A01W.01A	3	42931214	43383339	14	0.3943	SMALL-GAIN	FOCAL	5	"FAM198A,KRBOX1,POMGNT2,SNRK,ZNF662"
TCGA.AG.A00C.01A	3	44598491	44687904	14	0.5638	SMALL-GAIN	FOCAL	3	"ZKSCAN7,ZNF197,ZNF660"
TCGA.AA.A010.01A	3	44670638	44835692	28	0.5246	SMALL-GAIN	FOCAL	6	"KIAA1143,KIF15,ZNF197,ZNF35,ZNF501,ZNF502"
TCGA.AA.A00L.01A	3	44761692	44777722	7	0.4056	SMALL-GAIN	FOCAL	2	"ZNF501,ZNF502"
TCGA.AG.A00C.01A	3	44843206	44906480	25	0.4157	SMALL-GAIN	FOCAL	2	"KIF15,TMEM42"
TCGA.AA.A00F.01A	3	44846482	44916084	23	0.5677	SMALL-GAIN	FOCAL	2	"KIF15,TMEM42"
TCGA.AG.3906.01A	3	44847300	44932055	26	0.6252	SMALL-GAIN	FOCAL	3	"KIF15,TGM4,TMEM42"
TCGA.AG.3909.01A	3	44916084	45000575	18	0.4922	SMALL-GAIN	FOCAL	2	"TGM4,ZDHHC3"
TCGA.AG.3909.01A	3	45048863	45718363	43	0.4201	SMALL-GAIN	FOCAL	6	"CDCP1,CLEC3B,EXOSC7,LARS2,LIMD1,TMEM158"
TCGA.AA.A00N.01A	3	45048863	45730873	46	0.6192	SMALL-GAIN	FOCAL	7	"CDCP1,CLEC3B,EXOSC7,LARS2,LIMD1,SACM1L,TMEM158"
TCGA.AA.A00F.01A	3	46899669	46943964	14	0.4702	SMALL-GAIN	FOCAL	2	"MYL3,PTH1R"
TCGA.A6.3808.01A	3	47048543	47446102	62	0.4344	SMALL-GAIN	FOCAL	5	"KIF9,KLHL18,NBEAL2,PTPN23,SETD2"
TCGA.AG.3909.01A	3	47079118	47281274	24	0.485	SMALL-GAIN	FOCAL	2	"KIF9,SETD2"
TCGA.AA.A00N.01A	3	47084010	47277891	25	0.5492	SMALL-GAIN	FOCAL	2	"KIF9,SETD2"
TCGA.AG.A00C.01A	3	47286867	47318721	12	0.5358	SMALL-GAIN	FOCAL	1	KIF9
TCGA.AA.A00N.01A	3	47324429	47422532	11	0.5254	SMALL-GAIN	FOCAL	2	"KLHL18,PTPN23"
TCGA.AG.A01W.01A	3	47428227	47440379	10	0.6043	SMALL-GAIN	FOCAL	1	PTPN23
TCGA.AG.3909.01A	3	47476450	47651545	16	0.4961	SMALL-GAIN	FOCAL	4	"CSPG5,ELP6,SCAP,SMARCC1"
TCGA.AA.A010.01A	3	47702735	47823051	21	0.6622	SMALL-GAIN	FOCAL	1	SMARCC1
TCGA.AA.A010.01A	3	47887152	47894230	8	0.5469	SMALL-GAIN	FOCAL	2	"DHX30,MAP4"
TCGA.AA.A010.01A	3	47950491	48040121	10	0.505	SMALL-GAIN	FOCAL	1	MAP4
TCGA.AG.3891.01A	3	47957469	48266756	23	0.5172	SMALL-GAIN	FOCAL	3	"CAMP,CDC25A,MAP4"
TCGA.CK.5914.01A	3	48016861	48215727	9	0.479	SMALL-GAIN	FOCAL	2	"CDC25A,MAP4"
TCGA.AA.3930.01A	3	48222174	48282585	10	0.4871	SMALL-GAIN	FOCAL	2	"CAMP,CDC25A"
TCGA.AA.A00N.01A	3	48413705	48423163	9	0.5167	SMALL-GAIN	FOCAL	1	FBXW12
TCGA.AG.A00C.01A	3	48462035	48508403	24	0.406	SMALL-GAIN	FOCAL	5	"ATRIP,CCDC51,PLXNB1,TMA7,TREX1"
TCGA.AG.4009.01A	3	48557143	48665801	70	0.4974	SMALL-GAIN	FOCAL	6	"COL7A1,PFKFB4,SLC26A6,TMEM89,UCN2,UQCRC1"
TCGA.AA.3967.01A	3	48601747	48624353	30	0.5754	SMALL-GAIN	FOCAL	1	COL7A1
TCGA.AA.A01Q.01A	3	48646544	48689313	24	0.4296	SMALL-GAIN	FOCAL	4	"CELSR3,SLC26A6,TMEM89,UQCRC1"
TCGA.AG.A01W.01A	3	48660262	48671298	14	0.4394	SMALL-GAIN	FOCAL	1	SLC26A6
TCGA.AA.A010.01A	3	48732476	48964945	23	0.4121	SMALL-GAIN	FOCAL	5	"ARIH2,ARIH2OS,IP6K2,PRKAR2A,SLC25A20"
TCGA.AG.3611.01A	3	48788968	48936076	20	0.4452	SMALL-GAIN	FOCAL	2	"PRKAR2A,SLC25A20"
TCGA.AG.A01W.01A	3	49175231	49190850	8	0.4766	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	3	49339796	49372850	8	0.5067	SMALL-GAIN	FOCAL	1	USP4
TCGA.AG.A015.01A	3	49749862	49755367	5	0.5857	SMALL-GAIN	FOCAL	2	"AMIGO3,RNF123"
TCGA.AA.A01Q.01A	3	49770173	49836208	8	0.3828	SMALL-GAIN	FOCAL	2	"CDHR4,IP6K1"
TCGA.AG.3909.01A	3	49849256	49896771	18	0.5964	SMALL-GAIN	FOCAL	3	"CAMKV,TRAIP,UBA7"
TCGA.CK.5914.01A	3	49850468	49896771	16	0.5671	SMALL-GAIN	FOCAL	3	"CAMKV,TRAIP,UBA7"
TCGA.AG.3891.01A	3	49999997	50154467	39	0.6468	SMALL-GAIN	FOCAL	2	"RBM5,RBM6"
TCGA.AG.3909.01A	3	50036818	50112605	14	0.4209	SMALL-GAIN	FOCAL	1	RBM6
TCGA.AG.A008.01A	3	50106064	50154467	24	0.4929	SMALL-GAIN	FOCAL	2	"RBM5,RBM6"
TCGA.AA.A00F.01A	3	50106064	50155717	25	0.6159	SMALL-GAIN	FOCAL	2	"RBM5,RBM6"
TCGA.AG.3906.01A	3	50251581	50294127	11	0.6211	SMALL-GAIN	FOCAL	2	"GNAI2,SLC38A3"
TCGA.AG.3909.01A	3	50424924	50685274	28	0.4893	SMALL-GAIN	FOCAL	5	"C3orf18,CACNA2D2,CISH,HEMK1,MAPKAPK3"
TCGA.AG.3909.01A	3	51367515	51423607	18	0.5377	SMALL-GAIN	FOCAL	2	"DOCK3,MANF"
TCGA.AA.A00Q.01A	3	51432800	51661520	8	0.5017	SMALL-GAIN	FOCAL	3	"RAD54L2,RBM15B,VPRBP"
TCGA.AG.3909.01A	3	51440527	51972063	65	0.3947	SMALL-GAIN	FOCAL	10	"GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,RAD54L2,RRP9,TEX264,VPRBP"
TCGA.AA.A010.01A	3	51749038	51936971	13	0.6136	SMALL-GAIN	FOCAL	6	"GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6"
TCGA.AA.A01Q.01A	3	51863403	51972063	15	0.4154	SMALL-GAIN	FOCAL	5	"IQCF1,IQCF2,IQCF3,IQCF5,RRP9"
TCGA.AG.3891.01A	3	51978058	52011858	18	0.5686	SMALL-GAIN	FOCAL	5	"ABHD14A,ABHD14B,GPR62,PARP3,PCBP4"
TCGA.AG.A00C.01A	3	51989622	52003927	8	0.5825	SMALL-GAIN	FOCAL	3	"ABHD14B,GPR62,PCBP4"
TCGA.AA.A00N.01A	3	52130536	52180956	6	0.543	SMALL-GAIN	FOCAL	1	POC1A
TCGA.AA.A010.01A	3	52272924	52279852	2	0.6069	SMALL-GAIN	FOCAL	2	"PPM1M,TWF2"
TCGA.AG.3891.01A	3	52283634	52324939	12	0.5395	SMALL-GAIN	FOCAL	3	"GLYCTK,PPM1M,WDR82"
TCGA.AA.A00N.01A	3	52312170	52383968	21	0.5216	SMALL-GAIN	FOCAL	3	"DNAH1,GLYCTK,WDR82"
TCGA.AF.3914.01A	3	52420650	52453828	32	0.461	SMALL-GAIN	FOCAL	3	"BAP1,DNAH1,PHF7"
TCGA.AA.A00D.01A	3	52446820	52455614	7	0.4252	SMALL-GAIN	FOCAL	1	PHF7
TCGA.AA.A01Q.01A	3	52582052	52702462	26	0.4008	SMALL-GAIN	FOCAL	1	PBRM1
TCGA.AA.A00N.01A	3	52613031	52685696	17	0.5003	SMALL-GAIN	FOCAL	1	PBRM1
TCGA.AG.A01W.01A	3	52695070	52698094	5	0.5243	SMALL-GAIN	FOCAL	1	PBRM1
TCGA.AG.3891.01A	3	52712488	52775375	25	0.6173	SMALL-GAIN	FOCAL	5	"GLT8D1,GNL3,NEK4,PBRM1,SPCS1"
TCGA.AG.A00C.01A	3	52720714	52745738	20	0.6149	SMALL-GAIN	FOCAL	4	"GLT8D1,GNL3,NEK4,SPCS1"
TCGA.AA.A010.01A	3	52775375	52886580	77	0.5209	SMALL-GAIN	FOCAL	7	"ITIH1,ITIH3,ITIH4,MUSTN1,NEK4,TMEM110,TMEM110-MUSTN1"
TCGA.AA.A00N.01A	3	52818263	52883781	56	0.5757	SMALL-GAIN	FOCAL	6	"ITIH1,ITIH3,ITIH4,MUSTN1,TMEM110,TMEM110-MUSTN1"
TCGA.AG.3909.01A	3	52824723	52883781	48	0.675	SMALL-GAIN	FOCAL	6	"ITIH1,ITIH3,ITIH4,MUSTN1,TMEM110,TMEM110-MUSTN1"
TCGA.CK.5914.01A	3	52836319	52883781	35	0.4487	SMALL-GAIN	FOCAL	5	"ITIH3,ITIH4,MUSTN1,TMEM110,TMEM110-MUSTN1"
TCGA.AG.A01W.01A	3	52930735	52943816	7	0.6051	SMALL-GAIN	FOCAL	3	"SFMBT1,TMEM110,TMEM110-MUSTN1"
TCGA.AA.A01Q.01A	3	52954502	53126348	13	0.4021	SMALL-GAIN	FOCAL	2	"RFT1,SFMBT1"
TCGA.AG.3909.01A	3	52954502	53215152	26	0.4643	SMALL-GAIN	FOCAL	3	"PRKCD,RFT1,SFMBT1"
TCGA.AA.A00N.01A	3	52955684	53353368	58	0.3905	SMALL-GAIN	FOCAL	5	"DCP1A,PRKCD,RFT1,SFMBT1,TKT"
TCGA.AA.A010.01A	3	52962179	53145784	15	0.4803	SMALL-GAIN	FOCAL	2	"RFT1,SFMBT1"
TCGA.AG.3909.01A	3	53259720	53346219	17	0.6452	SMALL-GAIN	FOCAL	2	"DCP1A,TKT"
TCGA.AA.3850	3	53663189	53932803	125	0.47685	SMALL-GAIN	FOCAL	5	"ACTR8,CACNA1D,CHDH,IL17RB,SELK"
TCGA.AG.A00C.01A	3	53883633	53925710	26	0.4749	SMALL-GAIN	FOCAL	3	"ACTR8,IL17RB,SELK"
TCGA.CK.5914.01A	3	54676106	56591176	51	0.3984	SMALL-GAIN	FOCAL	4	"CACNA2D3,ERC2,LRTM1,WNT5A"
TCGA.AG.3909.01A	3	54786577	55108106	29	0.6456	SMALL-GAIN	FOCAL	2	"CACNA2D3,LRTM1"
TCGA.AG.3909.01A	3	55717776	56468350	15	0.5955	SMALL-GAIN	FOCAL	1	ERC2
TCGA.AA.3941	3	56516644	57335875	254	0.4019	SMALL-GAIN	FOCAL	9	"APPL1,ARHGEF3,ASB14,CCDC66,DNAH12,FAM208A,HESX1,IL17RD,SPATA12"
TCGA.AA.A010.01A	3	56662473	56694722	8	0.3843	SMALL-GAIN	FOCAL	1	FAM208A
TCGA.CK.5914.01A	3	56788991	57069080	7	0.5418	SMALL-GAIN	FOCAL	1	ARHGEF3
TCGA.AG.A01W.01A	3	57257210	57310787	25	0.4424	SMALL-GAIN	FOCAL	2	"APPL1,ASB14"
TCGA.AG.A01W.01A	3	57394087	57420322	12	0.511	SMALL-GAIN	FOCAL	1	DNAH12
TCGA.AA.A00N.01A	3	57817121	57994240	23	0.5138	SMALL-GAIN	FOCAL	2	"FLNB,SLMAP"
TCGA.AG.3909.01A	3	58111261	58260333	36	0.4848	SMALL-GAIN	FOCAL	3	"ABHD6,DNASE1L3,FLNB"
TCGA.AA.A00N.01A	3	58118508	58260333	33	0.5599	SMALL-GAIN	FOCAL	3	"ABHD6,DNASE1L3,FLNB"
TCGA.AA.A01Q.01A	3	58133885	58139070	4	0.464	SMALL-GAIN	FOCAL	1	FLNB
TCGA.AA.A01Q.01A	3	58196456	58260333	6	0.5407	SMALL-GAIN	FOCAL	2	"ABHD6,DNASE1L3"
TCGA.AG.3909.01A	3	58351525	58410430	17	0.4827	SMALL-GAIN	FOCAL	1	PXK
TCGA.AA.A010.01A	3	58351525	58419288	24	0.5056	SMALL-GAIN	FOCAL	2	"PDHB,PXK"
TCGA.AG.3906.01A	3	58484400	58622809	22	0.5647	SMALL-GAIN	FOCAL	4	"ACOX2,FAM107A,FAM3D,KCTD6"
TCGA.AA.A00N.01A	3	58502882	62423731	82	0.3899	SMALL-GAIN	FOCAL	9	"ACOX2,C3orf14,C3orf67,CADPS,FAM107A,FAM3D,FEZF2,FHIT,PTPRG"
TCGA.AA.3941	3	58761433	58789761	9	0.5732	SMALL-GAIN	FOCAL	1	C3orf67
TCGA.CK.5914.01A	3	58899387	62278796	37	0.4709	SMALL-GAIN	FOCAL	3	"C3orf67,FHIT,PTPRG"
TCGA.AA.3977	3	59559488	59796868	172	0.4355	SMALL-GAIN	FOCAL	1	FHIT
TCGA.DM.A1D0	3	59964545	60003287	56	0.4539	SMALL-GAIN	FOCAL	1	FHIT
TCGA.DM.A1HB	3	60495052	60531296	33	0.4424	SMALL-GAIN	FOCAL	1	FHIT
TCGA.D5.6931	3	60518503	60531296	5	0.4131	SMALL-GAIN	FOCAL	1	FHIT
TCGA.A6.6782	3	60536589	60589337	36	0.4889	SMALL-GAIN	FOCAL	1	FHIT
TCGA.CI.6621	3	60920143	61766747	374	0.44	SMALL-GAIN	FOCAL	2	"FHIT,PTPRG"
TCGA.AF.A56K	3	60978210	60993914	4	0.5639	SMALL-GAIN	FOCAL	1	FHIT
TCGA.DM.A28M.01A	3	62216841	62268365	14	0.5532	SMALL-GAIN	FOCAL	1	PTPRG
TCGA.AG.3909.01A	3	62356852	63985089	60	0.5207	SMALL-GAIN	FOCAL	6	"ATXN7,CADPS,FEZF2,SNTN,SYNPR,THOC7"
TCGA.AA.A00N.01A	3	62498367	62522093	7	0.3844	SMALL-GAIN	FOCAL	1	CADPS
TCGA.AA.A010.01A	3	63938003	63999097	13	0.4581	SMALL-GAIN	FOCAL	2	"ATXN7,PSMD6"
TCGA.AA.A00F.01A	3	63996296	64007962	5	0.5619	SMALL-GAIN	FOCAL	1	PSMD6
TCGA.AG.A00C.01A	3	63996296	64007962	5	0.5495	SMALL-GAIN	FOCAL	1	PSMD6
TCGA.AG.3909.01A	3	64008961	64644151	38	0.6486	SMALL-GAIN	FOCAL	3	"ADAMTS9,PRICKLE2,PSMD6"
TCGA.CK.5914.01A	3	64008961	65342092	42	0.5101	SMALL-GAIN	FOCAL	4	"ADAMTS9,MAGI1,PRICKLE2,PSMD6"
TCGA.AA.A00F.01A	3	64639980	65372758	16	0.3937	SMALL-GAIN	FOCAL	2	"ADAMTS9,MAGI1"
TCGA.AG.A00C.01A	3	64666838	65372758	12	0.445	SMALL-GAIN	FOCAL	2	"ADAMTS9,MAGI1"
TCGA.CK.5914.01A	3	65376780	66444437	30	0.4682	SMALL-GAIN	FOCAL	3	"LRIG1,MAGI1,SLC25A26"
TCGA.AG.3909.01A	3	65376780	66512796	39	0.4232	SMALL-GAIN	FOCAL	3	"LRIG1,MAGI1,SLC25A26"
TCGA.AA.A00F.01A	3	67049353	68055733	4	0.5101	SMALL-GAIN	FOCAL	3	"FAM19A1,KBTBD8,SUCLG2"
TCGA.CK.5914.01A	3	67426127	69047115	25	0.5105	SMALL-GAIN	FOCAL	4	"EOGT,FAM19A1,FAM19A4,SUCLG2"
TCGA.AA.A00F.01A	3	69036552	69126911	22	0.39	SMALL-GAIN	FOCAL	3	"EOGT,TMF1,UBA3"
TCGA.AG.A00C.01A	3	69053482	69058771	5	0.399	SMALL-GAIN	FOCAL	1	EOGT
TCGA.AA.A010.01A	3	69093592	71050080	68	0.4598	SMALL-GAIN	FOCAL	7	"ARL6IP5,FOXP1,FRMD4B,LMOD3,MITF,TMF1,UBA3"
TCGA.AG.A00C.01A	3	69112095	69126911	7	0.5598	SMALL-GAIN	FOCAL	1	UBA3
TCGA.AA.A00N.01A	3	69129216	69812942	32	0.4233	SMALL-GAIN	FOCAL	5	"ARL6IP5,FRMD4B,LMOD3,MITF,UBA3"
TCGA.AA.3941	3	69253631	69442314	87	0.4435	SMALL-GAIN	FOCAL	1	FRMD4B
TCGA.F4.6459	3	69536374	71594469	712	0.5382	SMALL-GAIN	FOCAL	2	"FOXP1,MITF"
TCGA.AA.A010.01A	3	72842019	73450015	34	0.5098	SMALL-GAIN	FOCAL	5	"EBLN2,GXYLT2,PDZRN3,PPP4R2,SHQ1"
TCGA.AA.A00N.01A	3	73096430	75790729	45	0.4122	SMALL-GAIN	FOCAL	6	"CNTN3,EBLN2,FRG2C,PDZRN3,PPP4R2,ZNF717"
TCGA.AZ.4684.01A	3	73113107	75786440	38	0.5798	SMALL-GAIN	FOCAL	5	"CNTN3,FRG2C,PDZRN3,PPP4R2,ZNF717"
TCGA.F4.6459	3	75875904	85714376	2268	0.3787	SMALL-GAIN	FOCAL	4	"CADM2,GBE1,ROBO1,ROBO2"
TCGA.AA.A010.01A	3	77644213	77695104	9	0.406	SMALL-GAIN	FOCAL	1	ROBO2
TCGA.AY.6196	3	78019747	82648707	1028	0.6775	SMALL-GAIN	FOCAL	2	"GBE1,ROBO1"
TCGA.AY.6196	3	82663987	82706367	14	0.6407	SMALL-GAIN	FOCAL	0	None
TCGA.AY.6196	3	83448913	87878380	920	0.6104	SMALL-GAIN	FOCAL	4	"CADM2,CHMP2B,POU1F1,VGLL3"
TCGA.AG.3584	3	86105455	93558925	843	0.4792	SMALL-GAIN	FOCAL	9	"C3orf38,CADM2,CGGBP1,CHMP2B,EPHA3,HTR1F,POU1F1,VGLL3,ZNF654"
TCGA.AA.A00N.01A	3	89156851	93611729	23	0.6209	SMALL-GAIN	FOCAL	2	"EPHA3,PROS1"
TCGA.CK.5914.01A	3	89448417	89499299	9	0.6218	SMALL-GAIN	FOCAL	1	EPHA3
TCGA.AF.3913	3	89489528	89544772	10	0.5698	SMALL-GAIN	FOCAL	1	EPHA3
TCGA.DY.A1DC	3	93543005	94289682	106	0.6152	SMALL-GAIN	FOCAL	5	"ARL13B,DHFRL1,NSUN3,PROS1,STX19"
TCGA.AA.A00N.01A	3	93779780	97167370	14	0.549	SMALL-GAIN	FOCAL	3	"DHFRL1,EPHA6,NSUN3"
TCGA.EI.7002	3	96710450	97331076	92	0.3886	SMALL-GAIN	FOCAL	1	EPHA6
TCGA.AA.A00N.01A	3	98311776	98520369	12	0.6429	SMALL-GAIN	FOCAL	3	"CPOX,DCBLD2,ST3GAL6"
TCGA.DY.A1DC	3	98964876	99083436	54	0.5666	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	3	99551996	100029245	27	0.5016	SMALL-GAIN	FOCAL	3	"CMSS1,FILIP1L,TBC1D23"
TCGA.AG.A00C.01A	3	100034901	100067589	10	0.4413	SMALL-GAIN	FOCAL	2	"NIT2,TBC1D23"
TCGA.AA.A00N.01A	3	100119430	100387745	23	0.5947	SMALL-GAIN	FOCAL	4	"ADGRG7,LNP1,TMEM45A,TOMM70A"
TCGA.AG.3909.01A	3	100148592	100378517	21	0.487	SMALL-GAIN	FOCAL	3	"ADGRG7,LNP1,TMEM45A"
TCGA.A6.6780	3	100317927	100442477	32	0.4935	SMALL-GAIN	FOCAL	2	"ADGRG7,TFG"
TCGA.AG.3909.01A	3	100447506	101117678	77	0.4151	SMALL-GAIN	FOCAL	4	"ABI3BP,IMPG2,SENP7,TFG"
TCGA.CK.5914.01A	3	100451315	100964594	47	0.6176	SMALL-GAIN	FOCAL	3	"ABI3BP,IMPG2,TFG"
TCGA.A6.3808.01A	3	100617566	101231858	43	0.5653	SMALL-GAIN	FOCAL	3	"ABI3BP,IMPG2,SENP7"
TCGA.CK.5914.01A	3	101010242	101090804	21	0.3913	SMALL-GAIN	FOCAL	2	"IMPG2,SENP7"
TCGA.AY.6196	3	101230303	102872263	361	0.6297	SMALL-GAIN	FOCAL	9	"CEP97,NFKBIZ,NXPE3,PCNP,RPL24,SENP7,TRMT10C,ZBTB11,ZPLD1"
TCGA.AG.A00C.01A	3	101383770	101404620	8	0.6037	SMALL-GAIN	FOCAL	2	"RPL24,ZBTB11"
TCGA.AA.A02E.01A	3	101474272	101540201	10	0.4129	SMALL-GAIN	FOCAL	2	"CEP97,NXPE3"
TCGA.AG.A01W.01A	3	101481147	101496582	5	0.5614	SMALL-GAIN	FOCAL	1	CEP97
TCGA.AG.A01W.01A	3	102521082	102533483	7	0.6723	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6811.01A	3	103678459	106753955	15	0.6147	SMALL-GAIN	FOCAL	2	"ALCAM,CBLB"
TCGA.DY.A1DC	3	105698148	105840870	39	0.6074	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	106140484	107202655	283	0.647	SMALL-GAIN	FOCAL	1	CCDC54
TCGA.AA.3509.01A	3	107774293	108677770	126	0.6394	SMALL-GAIN	FOCAL	10	"CD47,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AA.A00Q.01A	3	108094524	108220511	7	0.4678	SMALL-GAIN	FOCAL	2	"HHLA2,MYH15"
TCGA.CK.5914.01A	3	108094524	108288205	57	0.6078	SMALL-GAIN	FOCAL	3	"HHLA2,KIAA1524,MYH15"
TCGA.AG.3611.01A	3	109019174	109056241	12	0.5608	SMALL-GAIN	FOCAL	2	"DPPA2,DPPA4"
TCGA.AG.A01W.01A	3	110294933	110319469	8	0.5031	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	3	111828326	111886030	13	0.6389	SMALL-GAIN	FOCAL	3	"C3orf52,GCSAM,SLC9C1"
TCGA.AA.A00N.01A	3	111936248	112253059	27	0.4973	SMALL-GAIN	FOCAL	4	"ATG3,BTLA,CD200,SLC9C1"
TCGA.CK.5914.01A	3	112251489	112260634	6	0.3835	SMALL-GAIN	FOCAL	1	ATG3
TCGA.AG.3909.01A	3	112324246	112709839	21	0.4673	SMALL-GAIN	FOCAL	4	"CCDC80,CD200R1,CD200R1L,GTPBP8"
TCGA.AG.A00C.01A	3	112718245	112736243	11	0.5328	SMALL-GAIN	FOCAL	2	"C3orf17,GTPBP8"
TCGA.AG.3909.01A	3	112738348	113145995	37	0.4654	SMALL-GAIN	FOCAL	3	"BOC,C3orf17,CFAP44"
TCGA.AZ.4684.01A	3	113005473	113304024	45	0.3844	SMALL-GAIN	FOCAL	4	"BOC,CFAP44,SIDT1,SPICE1"
TCGA.AA.A010.01A	3	113464694	113513700	9	0.5538	SMALL-GAIN	FOCAL	2	"ATP6V1A,NAA50"
TCGA.AA.A00N.01A	3	113499846	113557670	13	0.4974	SMALL-GAIN	FOCAL	1	ATP6V1A
TCGA.AG.A00C.01A	3	113563303	113653239	12	0.4852	SMALL-GAIN	FOCAL	1	GRAMD1C
TCGA.DY.A1DC	3	116445467	116659043	103	0.6199	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	117033958	117602499	213	0.6447	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A020	3	118195173	118686780	158	0.5236	SMALL-GAIN	FOCAL	1	IGSF11
TCGA.F5.6811.01A	3	120306609	120405378	12	0.6325	SMALL-GAIN	FOCAL	2	"HGD,NDUFB4"
TCGA.AA.A010.01A	3	121215604	121363614	30	0.5837	SMALL-GAIN	FOCAL	4	"ARGFX,FBXO40,HCLS1,POLQ"
TCGA.AA.A00N.01A	3	121264525	121339327	5	0.6317	SMALL-GAIN	FOCAL	3	"ARGFX,FBXO40,POLQ"
TCGA.CK.5914.01A	3	121264525	121386879	24	0.5506	SMALL-GAIN	FOCAL	5	"ARGFX,FBXO40,GOLGB1,HCLS1,POLQ"
TCGA.AA.A00N.01A	3	121363614	121388011	9	0.4301	SMALL-GAIN	FOCAL	2	"GOLGB1,HCLS1"
TCGA.AA.A01Q.01A	3	121383731	121707138	63	0.5887	SMALL-GAIN	FOCAL	5	"EAF2,GOLGB1,ILDR1,IQCB1,SLC15A2"
TCGA.AA.A010.01A	3	121386271	121409558	7	0.5439	SMALL-GAIN	FOCAL	1	GOLGB1
TCGA.AA.3509.01A	3	121386271	121438446	17	0.6745	SMALL-GAIN	FOCAL	1	GOLGB1
TCGA.CK.4948.01B	3	121515943	121527712	4	0.5427	SMALL-GAIN	FOCAL	1	IQCB1
TCGA.AA.3509.01A	3	121554083	121649639	21	0.4277	SMALL-GAIN	FOCAL	2	"EAF2,SLC15A2"
TCGA.AZ.4684.01A	3	121554083	121649639	21	0.5017	SMALL-GAIN	FOCAL	2	"EAF2,SLC15A2"
TCGA.AA.A01Q.01A	3	121774244	122354716	60	0.6637	SMALL-GAIN	FOCAL	10	"CASR,CCDC58,CD86,CSTA,DTX3L,FAM162A,KPNA1,PARP15,PARP9,WDR5B"
TCGA.AA.A010.01A	3	122264208	122405867	27	0.572	SMALL-GAIN	FOCAL	4	"DTX3L,PARP14,PARP15,PARP9"
TCGA.AA.A00N.01A	3	122296498	122399699	13	0.5562	SMALL-GAIN	FOCAL	2	"PARP14,PARP15"
TCGA.AG.3909.01A	3	122334506	122354716	8	0.5263	SMALL-GAIN	FOCAL	1	PARP15
TCGA.AA.A00F.01A	3	122418230	122496530	9	0.5327	SMALL-GAIN	FOCAL	2	"HSPBAP1,PARP14"
TCGA.AA.A00N.01A	3	122545647	122598061	7	0.4205	SMALL-GAIN	FOCAL	1	DIRC2
TCGA.AG.3909.01A	3	122662236	123348282	56	0.5472	SMALL-GAIN	FOCAL	6	"ADCY5,HACD2,MYLK,PDIA5,SEC22A,SEMA5B"
TCGA.AA.A01Q.01A	3	122869064	123005495	12	0.6773	SMALL-GAIN	FOCAL	3	"ADCY5,PDIA5,SEC22A"
TCGA.AA.A01Q.01A	3	123332901	123428551	21	0.4572	SMALL-GAIN	FOCAL	1	MYLK
TCGA.AG.3909.01A	3	124352646	124449269	25	0.4624	SMALL-GAIN	FOCAL	2	"KALRN,UMPS"
TCGA.AG.3909.01A	3	124485025	124802707	39	0.5029	SMALL-GAIN	FOCAL	4	"HEG1,ITGB5,MUC13,SLC12A8"
TCGA.AG.3891.01A	3	124592246	124635122	7	0.5527	SMALL-GAIN	FOCAL	2	"ITGB5,MUC13"
TCGA.AA.A00Q.01A	3	124731450	124896576	7	0.4852	SMALL-GAIN	FOCAL	2	"HEG1,SLC12A8"
TCGA.AA.A00F.01A	3	124738088	124746048	3	0.3898	SMALL-GAIN	FOCAL	1	HEG1
TCGA.AA.A01Q.01A	3	125297747	125786751	23	0.3957	SMALL-GAIN	FOCAL	4	"ALG1L,OSBPL11,ROPN1B,SLC41A3"
TCGA.AG.A01W.01A	3	125627613	125648254	9	0.5283	SMALL-GAIN	FOCAL	1	ALG1L
TCGA.AA.A010.01A	3	125725213	125899711	35	0.6216	SMALL-GAIN	FOCAL	2	"ALDH1L1,SLC41A3"
TCGA.AA.A01Q.01A	3	126142095	126571442	40	0.4144	SMALL-GAIN	FOCAL	8	"C3orf22,CCDC37,CHCHD6,CHST13,TXNRD3,TXNRD3NB,UROC1,ZXDC"
TCGA.AG.3891.01A	3	126189691	126202172	5	0.5398	SMALL-GAIN	FOCAL	2	"UROC1,ZXDC"
TCGA.AA.A010.01A	3	126290785	126633460	7	0.4125	SMALL-GAIN	FOCAL	3	"CHCHD6,TXNRD3,TXNRD3NB"
TCGA.AG.A01W.01A	3	128218911	128398174	13	0.539	SMALL-GAIN	FOCAL	1	RPN1
TCGA.AG.4009.01A	3	128598487	128629520	17	0.3841	SMALL-GAIN	FOCAL	1	ACAD9
TCGA.AG.3906.01A	3	128694571	128707559	5	0.6618	SMALL-GAIN	FOCAL	1	KIAA1257
TCGA.AA.A010.01A	3	128877912	128979112	14	0.6108	SMALL-GAIN	FOCAL	4	"CNBP,COPG1,ISY1,ISY1-RAB43"
TCGA.AG.3906.01A	3	129009495	129127441	8	0.6411	SMALL-GAIN	FOCAL	3	"EFCAB12,H1FX,HMCES"
TCGA.AA.A010.01A	3	129120399	129267843	54	0.648	SMALL-GAIN	FOCAL	5	"EFCAB12,H1FOO,IFT122,MBD4,RHO"
TCGA.AG.3909.01A	3	129195120	129221537	11	0.5417	SMALL-GAIN	FOCAL	1	IFT122
TCGA.CK.5914.01A	3	129195120	129221537	11	0.5556	SMALL-GAIN	FOCAL	1	IFT122
TCGA.AG.A015.01A	3	129286297	129304747	9	0.4936	SMALL-GAIN	FOCAL	1	PLXND1
TCGA.CK.5914.01A	3	129370304	130202783	45	0.4476	SMALL-GAIN	FOCAL	4	"ALG1L2,COL6A5,TMCC1,TRH"
TCGA.A6.6653	3	129754604	129934896	14	0.4008	SMALL-GAIN	FOCAL	1	ALG1L2
TCGA.AF.3913	3	129892968	131190768	321	0.5676	SMALL-GAIN	FOCAL	8	"ASTE1,ATP2C1,COL6A5,COL6A6,MRPL3,NEK11,NUDT16,PIK3R4"
TCGA.AA.A010.01A	3	130202783	130325694	18	0.6162	SMALL-GAIN	FOCAL	2	"COL6A5,COL6A6"
TCGA.AG.3909.01A	3	131261372	132075488	24	0.5409	SMALL-GAIN	FOCAL	2	"ACPP,CPNE4"
TCGA.CK.5914.01A	3	131300365	131415323	5	0.3988	SMALL-GAIN	FOCAL	1	CPNE4
TCGA.DY.A1DC	3	132088749	132636536	124	0.6609	SMALL-GAIN	FOCAL	5	"ACAD11,ACKR4,DNAJC13,NPHP3,UBA5"
TCGA.AA.A01Q.01A	3	132202192	132948089	87	0.552	SMALL-GAIN	FOCAL	6	"ACAD11,ACKR4,DNAJC13,NPHP3,TMEM108,UBA5"
TCGA.AG.3909.01A	3	132209724	132350137	42	0.3817	SMALL-GAIN	FOCAL	3	"ACAD11,ACKR4,DNAJC13"
TCGA.AA.A00N.01A	3	132407502	132409985	4	0.5185	SMALL-GAIN	FOCAL	1	NPHP3
TCGA.AG.3891.01A	3	133293824	133320046	5	0.4761	SMALL-GAIN	FOCAL	2	"CDV3,TOPBP1"
TCGA.AA.A00N.01A	3	133335611	133356733	9	0.6333	SMALL-GAIN	FOCAL	1	TOPBP1
TCGA.AG.A00C.01A	3	133368607	133379833	8	0.6238	SMALL-GAIN	FOCAL	1	TOPBP1
TCGA.AA.A00N.01A	3	133538370	133941224	39	0.5079	SMALL-GAIN	FOCAL	5	"C3orf36,RAB6B,RYK,SLCO2A1,SRPRB"
TCGA.AA.A00Q.01A	3	134280202	134967107	11	0.5283	SMALL-GAIN	FOCAL	3	"CEP63,EPHB1,KY"
TCGA.AG.3611.01A	3	135789286	135969166	12	0.393	SMALL-GAIN	FOCAL	3	"MSL2,PCCB,PPP2R3A"
TCGA.AG.A00C.01A	3	138024796	138043627	6	0.5316	SMALL-GAIN	FOCAL	1	NME9
TCGA.AG.3909.01A	3	138347884	138477974	24	0.3849	SMALL-GAIN	FOCAL	2	"FAIM,PIK3CB"
TCGA.AG.3909.01A	3	139062819	139102123	27	0.4096	SMALL-GAIN	FOCAL	2	"COPB2,MRPS22"
TCGA.CK.5914.01A	3	139062819	140284858	55	0.6331	SMALL-GAIN	FOCAL	6	"CLSTN2,COPB2,MRPS22,NMNAT3,RBP1,RBP2"
TCGA.AA.A00N.01A	3	140998168	141248496	8	0.3944	SMALL-GAIN	FOCAL	3	"PXYLP1,RASA2,ZBTB38"
TCGA.AA.A00N.01A	3	141595596	141724193	17	0.3996	SMALL-GAIN	FOCAL	2	"ATP1B3,TFDP2"
TCGA.AA.A00N.01A	3	142203935	142741653	82	0.4816	SMALL-GAIN	FOCAL	6	"ATR,PAQR9,PCOLCE2,PLS1,TRPC1,U2SURP"
TCGA.AG.3906.01A	3	142742751	142775143	14	0.5145	SMALL-GAIN	FOCAL	1	U2SURP
TCGA.AG.A00C.01A	3	142754772	142840180	10	0.4693	SMALL-GAIN	FOCAL	2	"CHST2,U2SURP"
TCGA.AG.3909.01A	3	142985506	143566940	16	0.3988	SMALL-GAIN	FOCAL	1	SLC9A9
TCGA.F5.6814	3	144354429	144475488	26	0.4499	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	3	147106547	148614288	27	0.4015	SMALL-GAIN	FOCAL	5	"AGTR1,CPA3,CPB1,ZIC1,ZIC4"
TCGA.AA.3930.01A	3	147108666	147120463	3	0.5031	SMALL-GAIN	FOCAL	1	ZIC4
TCGA.AG.3909.01A	3	148458781	148614288	20	0.4995	SMALL-GAIN	FOCAL	3	"AGTR1,CPA3,CPB1"
TCGA.AA.A00N.01A	3	148741830	148782518	19	0.4766	SMALL-GAIN	FOCAL	2	"GYG1,HLTF"
TCGA.AA.A010.01A	3	148741830	148847464	27	0.5216	SMALL-GAIN	FOCAL	3	"GYG1,HLTF,HPS3"
TCGA.AG.3909.01A	3	148879887	149050995	30	0.4297	SMALL-GAIN	FOCAL	3	"CP,HPS3,TM4SF18"
TCGA.AA.A010.01A	3	148881581	149050995	29	0.5211	SMALL-GAIN	FOCAL	3	"CP,HPS3,TM4SF18"
TCGA.AA.A00N.01A	3	148884779	148901226	10	0.5512	SMALL-GAIN	FOCAL	2	"CP,HPS3"
TCGA.AA.A00N.01A	3	149469938	149638869	14	0.5763	SMALL-GAIN	FOCAL	3	"ANKUB1,COMMD2,RNF13"
TCGA.AG.3909.01A	3	150377641	151148026	65	0.4315	SMALL-GAIN	FOCAL	9	"CLRN1,ERICH6,GPR171,GPR87,MED12L,P2RY12,P2RY13,P2RY14,SIAH2"
TCGA.CM.6165.01A	3	151105576	151148026	8	0.4155	SMALL-GAIN	FOCAL	1	MED12L
TCGA.AA.A00N.01A	3	151148026	152017943	23	0.6267	SMALL-GAIN	FOCAL	6	"AADAC,AADACL2,IGSF10,MBNL1,MED12L,SUCNR1"
TCGA.AG.3909.01A	3	153867117	153973088	11	0.5165	SMALL-GAIN	FOCAL	1	ARHGEF26
TCGA.CM.4752	3	154827786	155238707	125	0.4411	SMALL-GAIN	FOCAL	2	"MME,PLCH1"
TCGA.AA.A00N.01A	3	154859728	155393711	34	0.5366	SMALL-GAIN	FOCAL	2	"MME,PLCH1"
TCGA.AA.A00N.01A	3	155588593	156254401	32	0.6316	SMALL-GAIN	FOCAL	2	"GMPS,KCNAB1"
TCGA.AA.A00N.01A	3	156421181	156763112	7	0.444	SMALL-GAIN	FOCAL	2	"LEKR1,TIPARP"
TCGA.AA.A00N.01A	3	157920814	158519911	42	0.5988	SMALL-GAIN	FOCAL	6	"GFM1,LXN,MFSD1,MLF1,RARRES1,RSRC1"
TCGA.AG.3909.01A	3	158787136	159706792	14	0.4444	SMALL-GAIN	FOCAL	4	"IL12A,IQCJ,IQCJ-SCHIP1,SCHIP1"
TCGA.AG.3742	3	159358777	159372344	9	0.5901	SMALL-GAIN	FOCAL	2	"IQCJ-SCHIP1,SCHIP1"
TCGA.AG.A00C.01A	3	159706792	159976265	6	0.4824	SMALL-GAIN	FOCAL	3	"C3orf80,IFT80,IL12A"
TCGA.AA.A00N.01A	3	159976265	160099254	17	0.5651	SMALL-GAIN	FOCAL	1	IFT80
TCGA.AG.A016.01A	3	160955889	161216907	12	0.4061	SMALL-GAIN	FOCAL	3	"NMD3,OTOL1,SPTSSB"
TCGA.AG.A01W.01A	3	162433825	162451256	12	0.6412	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	162633606	162738396	28	0.5317	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	3	162750428	162900101	30	0.5982	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A28M.01A	3	164709103	167217893	71	0.4633	SMALL-GAIN	FOCAL	6	"BCHE,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.CK.5914.01A	3	167031720	167086197	12	0.6375	SMALL-GAIN	FOCAL	1	ZBBX
TCGA.AA.3930.01A	3	167086197	167170677	6	0.405	SMALL-GAIN	FOCAL	2	"SERPINI2,ZBBX"
TCGA.CK.5914.01A	3	167189324	167506905	23	0.4741	SMALL-GAIN	FOCAL	4	"PDCD10,SERPINI1,SERPINI2,WDR49"
TCGA.CK.5914.01A	3	167812857	168849165	16	0.4435	SMALL-GAIN	FOCAL	2	"GOLIM4,MECOM"
TCGA.AA.3850	3	169512144	169674405	55	0.44175	SMALL-GAIN	FOCAL	4	"LRRC31,LRRC34,LRRIQ4,SAMD7"
TCGA.CK.5914.01A	3	169705981	169863159	12	0.5973	SMALL-GAIN	FOCAL	3	"GPR160,PHC3,SEC62"
TCGA.AA.3850	3	169707211	170252669	126	0.39855	SMALL-GAIN	FOCAL	7	"CLDN11,GPR160,PHC3,PRKCI,SEC62,SKIL,SLC7A14"
TCGA.AA.A010.01A	3	170107962	170625404	20	0.5255	SMALL-GAIN	FOCAL	5	"CLDN11,EIF5A2,RPL22L1,SKIL,SLC7A14"
TCGA.CK.5914.01A	3	170715690	171338137	48	0.5067	SMALL-GAIN	FOCAL	3	"PLD1,SLC2A2,TNIK"
TCGA.AA.A010.01A	3	170841338	172501537	94	0.5068	SMALL-GAIN	FOCAL	8	"ECT2,FNDC3B,GHSR,NCEH1,PLD1,TMEM212,TNFSF10,TNIK"
TCGA.AG.A00C.01A	3	171451170	171455645	5	0.5269	SMALL-GAIN	FOCAL	1	PLD1
TCGA.AA.3509.01A	3	172479350	178960675	85	0.6283	SMALL-GAIN	FOCAL	9	"ECT2,KCNMB2,KCNMB3,NAALADL2,NLGN1,PIK3CA,SPATA16,TBL1XR1,ZMAT3"
TCGA.AA.3664	3	173141974	175190424	718	0.4053	SMALL-GAIN	FOCAL	2	"NAALADL2,NLGN1"
TCGA.AG.3742	3	173253446	173289598	8	0.6726	SMALL-GAIN	FOCAL	1	NLGN1
TCGA.AA.A010.01A	3	174974173	178938742	44	0.3883	SMALL-GAIN	FOCAL	5	"KCNMB2,NAALADL2,PIK3CA,TBL1XR1,ZMAT3"
TCGA.CI.6623	3	175034700	175060123	5	0.4787	SMALL-GAIN	FOCAL	1	NAALADL2
TCGA.AA.3712	3	175064926	175237693	89	0.391	SMALL-GAIN	FOCAL	1	NAALADL2
TCGA.AA.3860	3	175159621	175187432	16	0.6501	SMALL-GAIN	FOCAL	1	NAALADL2
TCGA.AA.3941	3	176280218	176288253	5	0.6413	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	3	176666896	177338279	188	0.4181	SMALL-GAIN	FOCAL	1	TBL1XR1
TCGA.AA.A00N.01A	3	179092976	179132646	13	0.5537	SMALL-GAIN	FOCAL	2	"GNB4,MFN1"
TCGA.AZ.4684.01A	3	179529525	182662822	87	0.492	SMALL-GAIN	FOCAL	8	"ATP11B,CCDC39,DCUN1D1,DNAJC19,FXR1,PEX5L,SOX2,TTC14"
TCGA.AG.3598	3	180550701	181785747	215	0.5708	SMALL-GAIN	FOCAL	3	"DNAJC19,FXR1,SOX2"
TCGA.AA.3509.01A	3	180680598	182631612	38	0.4926	SMALL-GAIN	FOCAL	4	"ATP11B,DNAJC19,FXR1,SOX2"
TCGA.AA.3850	3	181310590	181649516	73	0.50815	SMALL-GAIN	FOCAL	1	SOX2
TCGA.AA.3941	3	181361311	181721025	89	0.446	SMALL-GAIN	FOCAL	1	SOX2
TCGA.AA.3941	3	182392032	182573481	59	0.4631	SMALL-GAIN	FOCAL	1	ATP11B
TCGA.AA.A00F.01A	3	182769926	182812270	7	0.3937	SMALL-GAIN	FOCAL	1	MCCC1
TCGA.AA.A010.01A	3	183446465	183493652	12	0.3978	SMALL-GAIN	FOCAL	1	YEATS2
TCGA.AA.A00N.01A	3	183602462	183853127	52	0.5477	SMALL-GAIN	FOCAL	6	"ABCC5,EIF2B5,HTR3C,HTR3D,HTR3E,PARL"
TCGA.AA.A010.01A	3	183602462	183853127	52	0.5971	SMALL-GAIN	FOCAL	6	"ABCC5,EIF2B5,HTR3C,HTR3D,HTR3E,PARL"
TCGA.CK.5914.01A	3	183655642	183706985	23	0.6605	SMALL-GAIN	FOCAL	1	ABCC5
TCGA.AG.A01L.01A	3	183873397	183897902	15	0.6328	SMALL-GAIN	FOCAL	2	"AP2M1,DVL3"
TCGA.AG.3909.01A	3	183966959	183994218	5	0.4922	SMALL-GAIN	FOCAL	3	"ALG3,CAMK2N2,ECE2"
TCGA.AG.3891.01A	3	184020732	184046380	28	0.605	SMALL-GAIN	FOCAL	2	"EIF4G1,PSMD2"
TCGA.AA.3509.01A	3	184556417	184631231	19	0.4711	SMALL-GAIN	FOCAL	1	VPS8
TCGA.AG.3906.01A	3	185212935	185241802	8	0.4436	SMALL-GAIN	FOCAL	2	"LIPH,TMEM41A"
TCGA.AG.3611.01A	3	185376064	185416033	9	0.5337	SMALL-GAIN	FOCAL	1	IGF2BP2
TCGA.AG.A01W.01A	3	185535163	185547037	7	0.5584	SMALL-GAIN	FOCAL	1	IGF2BP2
TCGA.A6.3810.01A	3	185655533	185797596	8	0.6537	SMALL-GAIN	FOCAL	2	"ETV5,TRA2B"
TCGA.AG.A01W.01A	3	186068423	186086538	5	0.6433	SMALL-GAIN	FOCAL	1	DGKG
TCGA.AG.A00C.01A	3	186268897	186303064	15	0.3828	SMALL-GAIN	FOCAL	2	"DNAJB11,TBCCD1"
TCGA.AG.3909.01A	3	186330883	186394844	21	0.6202	SMALL-GAIN	FOCAL	3	"AHSG,FETUB,HRG"
TCGA.CK.5914.01A	3	186334935	186501313	29	0.3938	SMALL-GAIN	FOCAL	4	"AHSG,FETUB,HRG,KNG1"
TCGA.AA.A02K.01A	3	186437843	186449280	5	0.5936	SMALL-GAIN	FOCAL	1	KNG1
TCGA.AG.3906.01A	3	186444974	186461438	6	0.4857	SMALL-GAIN	FOCAL	1	KNG1
TCGA.AG.A00C.01A	3	186461438	186522354	18	0.5535	SMALL-GAIN	FOCAL	3	"EIF4A2,KNG1,RFC4"
TCGA.AG.A008.01A	3	186502154	186515292	14	0.4793	SMALL-GAIN	FOCAL	2	"EIF4A2,RFC4"
TCGA.AA.A00F.01A	3	186502154	186522354	16	0.4927	SMALL-GAIN	FOCAL	2	"EIF4A2,RFC4"
TCGA.AA.A00N.01A	3	186570810	187416239	34	0.4894	SMALL-GAIN	FOCAL	8	"ADIPOQ,MASP1,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1"
TCGA.CK.5914.01A	3	186943063	187009322	15	0.6694	SMALL-GAIN	FOCAL	1	MASP1
TCGA.AG.A01W.01A	3	187984043	187993281	13	0.4868	SMALL-GAIN	FOCAL	1	LPP
TCGA.AG.3909.01A	3	188123861	189713028	46	0.5097	SMALL-GAIN	FOCAL	4	"LPP,P3H2,TP63,TPRG1"
TCGA.AG.3909.01A	3	190105922	190127703	5	0.5359	SMALL-GAIN	FOCAL	1	CLDN16
TCGA.AA.A00N.01A	3	190147334	190345095	11	0.3915	SMALL-GAIN	FOCAL	2	"IL1RAP,TMEM207"
TCGA.CK.5914.01A	3	190930282	191178901	20	0.5067	SMALL-GAIN	FOCAL	3	"CCDC50,OSTN,UTS2B"
TCGA.AG.A00C.01A	3	190995824	191074812	3	0.4566	SMALL-GAIN	FOCAL	2	"CCDC50,UTS2B"
TCGA.AA.A010.01A	3	193128735	193409828	54	0.4218	SMALL-GAIN	FOCAL	2	"ATP13A4,OPA1"
TCGA.AG.3909.01A	3	193171841	193232440	15	0.5265	SMALL-GAIN	FOCAL	1	ATP13A4
TCGA.AA.A01Q.01A	3	194392744	195479875	45	0.6628	SMALL-GAIN	FOCAL	8	"ACAP2,APOD,FAM43A,LSG1,MUC20,MUC4,PPP1R2,XXYLT1"
TCGA.AG.A016.01A	3	195483966	195493490	7	0.6427	SMALL-GAIN	FOCAL	1	MUC4
TCGA.AA.A01Q.01A	3	195495856	195538578	7	0.598	SMALL-GAIN	FOCAL	1	MUC4
TCGA.AG.A01W.01A	3	195646693	195790500	14	0.5541	SMALL-GAIN	FOCAL	1	TFRC
TCGA.AA.A00F.01A	3	195959887	196042920	13	0.5624	SMALL-GAIN	FOCAL	3	"PCYT1A,SLC51A,TCTEX1D2"
TCGA.AA.A01Q.01A	3	196748212	196888484	26	0.656	SMALL-GAIN	FOCAL	2	"DLG1,MFI2"
TCGA.AA.A010.01A	3	196786708	196863366	15	0.4185	SMALL-GAIN	FOCAL	1	DLG1
TCGA.AA.3509.01A	3	196792552	196910455	19	0.4516	SMALL-GAIN	FOCAL	1	DLG1
TCGA.A6.6648	3	196826688	196866741	3	0.3919	SMALL-GAIN	FOCAL	1	DLG1
TCGA.AG.A01W.01A	3	196990390	197090290	17	0.499	SMALL-GAIN	FOCAL	1	DLG1
TCGA.AA.3492	3	197103160	197314430	70	0.5685	SMALL-GAIN	FOCAL	1	BDH1
TCGA.CK.5914.01A	3	197408638	197431908	14	0.5698	SMALL-GAIN	FOCAL	1	KIAA0226
TCGA.AA.A01Q.01A	3	197408638	197712628	51	0.6304	SMALL-GAIN	FOCAL	6	"FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,RPL35A"
TCGA.AA.A00N.01A	3	197518148	197592936	17	0.5435	SMALL-GAIN	FOCAL	1	LRCH3
TCGA.AA.A010.01A	3	197518148	197896676	53	0.5705	SMALL-GAIN	FOCAL	5	"FAM157A,IQCG,LMLN,LRCH3,RPL35A"
TCGA.F5.6864	3	197800243	197833757	4	0.4056	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00Q.01A	4	53303	289178	9	0.5288	SMALL-GAIN	FOCAL	3	"ZNF595,ZNF718,ZNF732"
TCGA.AA.3509.01A	4	53303	437652	24	0.4974	SMALL-GAIN	FOCAL	5	"ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A00K.01A	4	53303	437652	20	0.4624	SMALL-GAIN	FOCAL	5	"ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3861.01A	4	53303	466293	26	0.4243	SMALL-GAIN	FOCAL	5	"ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A00L.01A	4	436025	466293	4	0.6773	SMALL-GAIN	FOCAL	1	ZNF721
TCGA.AG.A01L.01A	4	647603	661598	6	0.5247	SMALL-GAIN	FOCAL	1	PDE6B
TCGA.AG.A01W.01A	4	717434	728342	5	0.5668	SMALL-GAIN	FOCAL	1	PCGF3
TCGA.AG.A00C.01A	4	898377	949491	13	0.6488	SMALL-GAIN	FOCAL	2	"GAK,TMEM175"
TCGA.AG.A01W.01A	4	1946340	2046925	18	0.5789	SMALL-GAIN	FOCAL	3	"C4orf48,NELFA,WHSC1"
TCGA.AG.A016.01A	4	1976571	1993234	8	0.6636	SMALL-GAIN	FOCAL	2	"NELFA,WHSC1"
TCGA.AA.A00K.01A	4	1978155	2010436	11	0.5238	SMALL-GAIN	FOCAL	2	"NELFA,WHSC1"
TCGA.AG.A01W.01A	4	2222559	2312953	15	0.4026	SMALL-GAIN	FOCAL	4	"HAUS3,MXD4,POLN,ZFYVE28"
TCGA.AG.A00C.01A	4	2230774	2252244	6	0.5836	SMALL-GAIN	FOCAL	3	"HAUS3,MXD4,POLN"
TCGA.AM.5820	4	2247832	2471801	68	0.4885	SMALL-GAIN	FOCAL	4	"CFAP99,MXD4,RNF4,ZFYVE28"
TCGA.AA.A010.01A	4	2306019	2355631	7	0.4091	SMALL-GAIN	FOCAL	1	ZFYVE28
TCGA.AA.A00N.01A	4	2632702	2701357	14	0.6729	SMALL-GAIN	FOCAL	1	FAM193A
TCGA.AG.A01W.01A	4	2897490	2911015	11	0.4288	SMALL-GAIN	FOCAL	1	ADD1
TCGA.AG.A00C.01A	4	2940508	2959291	16	0.6073	SMALL-GAIN	FOCAL	1	NOP14
TCGA.AG.A00C.01A	4	3040055	3105500	5	0.4364	SMALL-GAIN	FOCAL	2	"GRK4,HTT"
TCGA.AA.A00N.01A	4	3117780	3215644	41	0.5506	SMALL-GAIN	FOCAL	1	HTT
TCGA.AA.A024.01A	4	3221868	3430236	29	0.4683	SMALL-GAIN	FOCAL	3	"HTT,MSANTD1,RGS12"
TCGA.AM.5820	4	3363576	3990078	118	0.6674	SMALL-GAIN	FOCAL	5	"ADRA2C,DOK7,HGFAC,LRPAP1,RGS12"
TCGA.AG.A00C.01A	4	4207727	4281138	12	0.4175	SMALL-GAIN	FOCAL	3	"LYAR,OTOP1,TMEM128"
TCGA.AA.A010.01A	4	4228159	5687060	68	0.4608	SMALL-GAIN	FOCAL	10	"CYTL1,EVC2,LYAR,MSX1,NSG1,OTOP1,STK32B,STX18,TMEM128,ZBTB49"
TCGA.AA.3982	4	4546922	4710202	71	0.3789	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	4	4715339	5053961	175	0.4048	SMALL-GAIN	FOCAL	3	"CYTL1,MSX1,STK32B"
TCGA.AA.A00N.01A	4	5754546	5981873	34	0.6362	SMALL-GAIN	FOCAL	2	"CRMP1,EVC"
TCGA.AA.A010.01A	4	5961070	6114408	27	0.4419	SMALL-GAIN	FOCAL	1	JAKMIP1
TCGA.CK.5914.01A	4	6064007	6114408	9	0.4618	SMALL-GAIN	FOCAL	1	JAKMIP1
TCGA.AA.A00N.01A	4	6588695	6695623	17	0.3822	SMALL-GAIN	FOCAL	3	"MAN2B2,MRFAP1,S100P"
TCGA.AM.5820	4	7109082	7415774	168	0.4528	SMALL-GAIN	FOCAL	1	SORCS2
TCGA.AA.A00Q.01A	4	7397952	7666043	4	0.462	SMALL-GAIN	FOCAL	2	"PSAPL1,SORCS2"
TCGA.AM.5820	4	7485774	7512774	30	0.4686	SMALL-GAIN	FOCAL	1	SORCS2
TCGA.AM.5820	4	7638316	7759803	54	0.5827	SMALL-GAIN	FOCAL	1	SORCS2
TCGA.CK.5914.01A	4	7820763	7873627	6	0.667	SMALL-GAIN	FOCAL	1	AFAP1
TCGA.AM.5820	4	8090938	8187441	36	0.4639	SMALL-GAIN	FOCAL	1	ABLIM2
TCGA.AM.5820	4	8251854	8707026	169	0.3933	SMALL-GAIN	FOCAL	5	"ACOX3,CPZ,GPR78,HTRA3,TRMT44"
TCGA.AA.3941	4	9392279	10214159	310	0.3936	SMALL-GAIN	FOCAL	4	"DEFB131,DRD5,SLC2A9,WDR1"
TCGA.CK.5914.01A	4	9446198	10020550	17	0.6717	SMALL-GAIN	FOCAL	3	"DEFB131,DRD5,SLC2A9"
TCGA.AA.3941	4	10730198	10738617	9	0.5512	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	4	15704749	16172225	49	0.5225	SMALL-GAIN	FOCAL	6	"BST1,CD38,FGFBP1,FGFBP2,PROM1,TAPT1"
TCGA.AA.A00N.01A	4	15720482	17493806	64	0.5197	SMALL-GAIN	FOCAL	8	"BST1,CD38,FGFBP1,FGFBP2,LDB2,PROM1,QDPR,TAPT1"
TCGA.RU.A8FL	4	17073542	18750216	603	0.625	SMALL-GAIN	FOCAL	8	"CLRN2,DCAF16,FAM184B,LAP3,LCORL,MED28,NCAPG,QDPR"
TCGA.AA.A00Q.01A	4	17635280	17710468	4	0.672	SMALL-GAIN	FOCAL	1	FAM184B
TCGA.RU.A8FL	4	19788262	23056661	1080	0.6392	SMALL-GAIN	FOCAL	5	"ADGRA3,GBA3,KCNIP4,PACRGL,SLIT2"
TCGA.AF.6672	4	19863538	20480322	158	0.4172	SMALL-GAIN	FOCAL	1	SLIT2
TCGA.AA.A00N.01A	4	20469359	25005026	112	0.6159	SMALL-GAIN	FOCAL	10	"ADGRA3,CCDC149,DHX15,GBA3,KCNIP4,LGI2,PACRGL,PPARGC1A,SLIT2,SOD3"
TCGA.AA.A010.01A	4	25032082	25235755	12	0.4736	SMALL-GAIN	FOCAL	3	"LGI2,PI4K2B,SEPSECS"
TCGA.A6.2677	4	25101583	26072750	331	0.4796	SMALL-GAIN	FOCAL	7	"ANAPC4,PI4K2B,SEL1L3,SEPSECS,SLC34A2,SMIM20,ZCCHC4"
TCGA.AG.3891.01A	4	25253915	25270707	8	0.5234	SMALL-GAIN	FOCAL	1	PI4K2B
TCGA.EI.7004	4	25557046	25567433	10	0.6652	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	4	25777853	26322339	17	0.386	SMALL-GAIN	FOCAL	3	"RBPJ,SEL1L3,SMIM20"
TCGA.F4.6704	4	26051503	31688284	1671	0.4317	SMALL-GAIN	FOCAL	5	"CCKAR,PCDH7,RBPJ,STIM2,TBC1D19"
TCGA.AA.A00N.01A	4	26407743	30723014	48	0.6169	SMALL-GAIN	FOCAL	5	"CCKAR,PCDH7,RBPJ,STIM2,TBC1D19"
TCGA.A6.3810.01A	4	26755381	26862558	3	0.4623	SMALL-GAIN	FOCAL	2	"STIM2,TBC1D19"
TCGA.AA.3850	4	27209595	27216053	7	0.55515	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	4	30921728	37357938	47	0.6471	SMALL-GAIN	FOCAL	4	"ARAP2,DTHD1,NWD2,PCDH7"
TCGA.AA.3875	4	38011564	38318353	140	0.3839	SMALL-GAIN	FOCAL	1	TBC1D1
TCGA.AA.A00N.01A	4	38907091	39408573	83	0.6123	SMALL-GAIN	FOCAL	6	"FAM114A1,KLB,KLHL5,RFC1,TMEM156,WDR19"
TCGA.AA.A01Q.01A	4	38995361	39447964	40	0.3931	SMALL-GAIN	FOCAL	5	"KLB,KLHL5,RFC1,TMEM156,WDR19"
TCGA.AA.A010.01A	4	39116732	39505463	79	0.55	SMALL-GAIN	FOCAL	7	"KLB,KLHL5,LIAS,RFC1,RPL9,UGDH,WDR19"
TCGA.A6.3808.01A	4	39191229	39367779	52	0.646	SMALL-GAIN	FOCAL	2	"RFC1,WDR19"
TCGA.AA.A00N.01A	4	39827025	40113662	36	0.4891	SMALL-GAIN	FOCAL	2	"N4BP2,PDS5A"
TCGA.AG.A00C.01A	4	40121513	40155733	11	0.4956	SMALL-GAIN	FOCAL	1	N4BP2
TCGA.AG.3909.01A	4	40244990	40427883	8	0.4359	SMALL-GAIN	FOCAL	3	"CHRNA9,RBM47,RHOH"
TCGA.AA.A00N.01A	4	40809040	41015596	13	0.5822	SMALL-GAIN	FOCAL	2	"APBB2,NSUN7"
TCGA.AA.3850	4	42465819	42487375	11	0.48335	SMALL-GAIN	FOCAL	1	ATP8A1
TCGA.AA.A00N.01A	4	44709727	46334569	20	0.5457	SMALL-GAIN	FOCAL	3	"GABRA2,GABRG1,GNPDA2"
TCGA.F5.6811.01A	4	46661696	46674160	5	0.5838	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A016.01A	4	48496101	48514461	9	0.3943	SMALL-GAIN	FOCAL	2	"FRYL,ZAR1"
TCGA.CK.5914.01A	4	48514461	48559420	24	0.4435	SMALL-GAIN	FOCAL	1	FRYL
TCGA.AA.A00N.01A	4	48523036	48545797	12	0.5751	SMALL-GAIN	FOCAL	1	FRYL
TCGA.AA.A010.01A	4	48553462	48595899	22	0.5772	SMALL-GAIN	FOCAL	1	FRYL
TCGA.AA.A00N.01A	4	49019229	52883232	21	0.4926	SMALL-GAIN	FOCAL	3	"CWH43,DCUN1D4,LRRC66"
TCGA.AG.3902	4	49584108	53091459	79	0.4119	SMALL-GAIN	FOCAL	4	"DCUN1D4,LRRC66,SGCB,SPATA18"
TCGA.AA.A00N.01A	4	52938036	53497170	16	0.5376	SMALL-GAIN	FOCAL	2	"SPATA18,USP46"
TCGA.AA.A010.01A	4	54179754	54439773	32	0.6255	SMALL-GAIN	FOCAL	3	"FIP1L1,LNX1,SCFD2"
TCGA.CK.5914.01A	4	54306664	55973864	84	0.4168	SMALL-GAIN	FOCAL	7	"CHIC2,FIP1L1,GSX2,KDR,KIT,LNX1,PDGFRA"
TCGA.AG.3906.01A	4	56225485	56235952	4	0.5502	SMALL-GAIN	FOCAL	1	SRD5A3
TCGA.AF.3911	4	56342325	56380483	12	0.5074	SMALL-GAIN	FOCAL	1	CLOCK
TCGA.AA.3862.01A	4	56446947	57367808	108	0.5708	SMALL-GAIN	FOCAL	9	"AASDH,CEP135,EXOC1,KIAA1211,NMU,PAICS,PDCL2,PPAT,SRP72"
TCGA.AF.3911	4	56478361	56512573	9	0.5213	SMALL-GAIN	FOCAL	1	NMU
TCGA.AG.A00C.01A	4	56818246	56823361	4	0.5791	SMALL-GAIN	FOCAL	1	CEP135
TCGA.AA.A00N.01A	4	56851389	56883817	8	0.4875	SMALL-GAIN	FOCAL	1	CEP135
TCGA.AA.A010.01A	4	57221356	57687705	52	0.556	SMALL-GAIN	FOCAL	8	"AASDH,ARL9,HOPX,PAICS,PPAT,SPINK2,SRP72,THEGL"
TCGA.AG.A00C.01A	4	57307842	57881621	52	0.4258	SMALL-GAIN	FOCAL	9	"ARL9,HOPX,NOA1,PAICS,POLR2B,REST,SPINK2,SRP72,THEGL"
TCGA.AG.3891.01A	4	57676240	57839977	13	0.4551	SMALL-GAIN	FOCAL	3	"NOA1,REST,SPINK2"
TCGA.AG.3906.01A	4	57795990	57839337	6	0.4483	SMALL-GAIN	FOCAL	2	"NOA1,REST"
TCGA.D5.6532	4	57820119	57950622	70	0.4839	SMALL-GAIN	FOCAL	3	"IGFBP7,NOA1,POLR2B"
TCGA.AG.3906.01A	4	57856877	57871754	6	0.3965	SMALL-GAIN	FOCAL	1	POLR2B
TCGA.A6.2675	4	58816762	60852464	572	0.4839	SMALL-GAIN	FOCAL	0	None
TCGA.RU.A8FL	4	59892215	60400847	163	0.613	SMALL-GAIN	FOCAL	0	None
TCGA.AF.6136	4	61030084	61346138	82	0.4493	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	4	62452903	66509033	49	0.6172	SMALL-GAIN	FOCAL	3	"ADGRL3,EPHA5,TECRL"
TCGA.AF.3911	4	65084925	65778212	206	0.3958	SMALL-GAIN	FOCAL	1	TECRL
TCGA.AA.A00N.01A	4	70066107	70512671	25	0.4692	SMALL-GAIN	FOCAL	5	"UGT2A1,UGT2A2,UGT2B11,UGT2B28,UGT2B4"
TCGA.AA.A01C.01A	4	70799845	70866525	18	0.5815	SMALL-GAIN	FOCAL	3	"CSN1S1,CSN2,STATH"
TCGA.AA.A00N.01A	4	70821974	70866525	8	0.4474	SMALL-GAIN	FOCAL	2	"CSN2,STATH"
TCGA.AA.A01C.01A	4	71027217	71346524	25	0.409	SMALL-GAIN	FOCAL	9	"CABS1,CSN3,FDCSP,MUC7,ODAM,PROL1,PRR27,SMR3A,SMR3B"
TCGA.AA.3509.01A	4	71889229	73414148	64	0.6288	SMALL-GAIN	FOCAL	5	"ADAMTS3,DCK,GC,NPFFR2,SLC4A4"
TCGA.CK.5914.01A	4	72102269	73414148	62	0.5232	SMALL-GAIN	FOCAL	4	"ADAMTS3,GC,NPFFR2,SLC4A4"
TCGA.AA.A01C.01A	4	72319175	72432699	14	0.5246	SMALL-GAIN	FOCAL	1	SLC4A4
TCGA.AA.A01C.01A	4	73169587	73181548	7	0.4461	SMALL-GAIN	FOCAL	1	ADAMTS3
TCGA.AG.A01W.01A	4	73388522	73400393	7	0.5925	SMALL-GAIN	FOCAL	1	ADAMTS3
TCGA.AA.A010.01A	4	74017094	74315015	31	0.6549	SMALL-GAIN	FOCAL	3	"AFP,ALB,ANKRD17"
TCGA.AA.A00N.01A	4	74319470	74481531	25	0.5633	SMALL-GAIN	FOCAL	3	"AFM,AFP,RASSF6"
TCGA.DY.A1DC	4	75515404	75746696	66	0.4963	SMALL-GAIN	FOCAL	1	BTC
TCGA.AA.A00N.01A	4	75673204	76439355	16	0.6343	SMALL-GAIN	FOCAL	3	"BTC,PARM1,RCHY1"
TCGA.CK.5914.01A	4	75681062	76419279	11	0.4702	SMALL-GAIN	FOCAL	3	"BTC,PARM1,RCHY1"
TCGA.CK.5914.01A	4	76649940	76727585	17	0.4317	SMALL-GAIN	FOCAL	1	USO1
TCGA.AA.A00N.01A	4	77002928	77134553	32	0.4232	SMALL-GAIN	FOCAL	3	"ART3,NUP54,SCARB2"
TCGA.AA.A010.01A	4	77036470	77097559	19	0.6132	SMALL-GAIN	FOCAL	2	"NUP54,SCARB2"
TCGA.AA.A00N.01A	4	77249987	77979618	50	0.3799	SMALL-GAIN	FOCAL	5	"CCDC158,CCNI,SEPT11,SHROOM3,SOWAHB"
TCGA.F5.6864	4	77795949	77836664	20	0.4529	SMALL-GAIN	FOCAL	1	SOWAHB
TCGA.AG.A00C.01A	4	78079654	78086917	6	0.653	SMALL-GAIN	FOCAL	1	CCNG2
TCGA.AG.3909.01A	4	79372908	79447645	25	0.3867	SMALL-GAIN	FOCAL	1	FRAS1
TCGA.AA.3509.01A	4	79831717	82074748	53	0.4411	SMALL-GAIN	FOCAL	10	"ANTXR2,BMP2K,BMP3,C4orf22,FGF5,GK2,NAA11,PAQR3,PRDM8,PRKG2"
TCGA.AA.A00N.01A	4	83406616	83782726	26	0.5863	SMALL-GAIN	FOCAL	3	"SCD5,SEC31A,TMEM150C"
TCGA.AA.A00N.01A	4	84255671	84379444	22	0.6471	SMALL-GAIN	FOCAL	3	"HELQ,HPSE,MRPS18C"
TCGA.AG.A00C.01A	4	84390158	84465624	7	0.3792	SMALL-GAIN	FOCAL	2	"AGPAT9,FAM175A"
TCGA.AZ.4614	4	84810362	84830080	8	0.6614	SMALL-GAIN	FOCAL	0	None
TCGA.CI.6624	4	84950277	85634487	213	0.4885	SMALL-GAIN	FOCAL	3	"CDS1,NKX6-1,WDFY3"
TCGA.AA.3975	4	87119711	87172097	18	0.6645	SMALL-GAIN	FOCAL	1	MAPK10
TCGA.AA.A00F.01A	4	87808864	87812600	3	0.4546	SMALL-GAIN	FOCAL	1	C4orf36
TCGA.AA.A00N.01A	4	87928481	88732467	75	0.6504	SMALL-GAIN	FOCAL	9	"AFF1,DMP1,DSPP,HSD17B11,HSD17B13,IBSP,KLHL8,NUDT9,SPARCL1"
TCGA.AA.3941	4	88770997	89527322	205	0.3893	SMALL-GAIN	FOCAL	9	"ABCG2,HERC3,HERC5,HERC6,PIGY,PKD2,PPM1K,PYURF,SPP1"
TCGA.CK.5914.01A	4	88957320	89013336	14	0.4216	SMALL-GAIN	FOCAL	2	"ABCG2,PKD2"
TCGA.CK.5914.01A	4	89022325	89060897	10	0.6109	SMALL-GAIN	FOCAL	1	ABCG2
TCGA.CK.5914.01A	4	89311767	89358812	17	0.539	SMALL-GAIN	FOCAL	1	HERC6
TCGA.AA.3941	4	90545297	90608958	13	0.4403	SMALL-GAIN	FOCAL	0	None
TCGA.AH.6544	4	91070085	91290713	60	0.495	SMALL-GAIN	FOCAL	1	CCSER1
TCGA.G4.6317	4	91453932	91941941	134	0.4794	SMALL-GAIN	FOCAL	1	CCSER1
TCGA.D5.6540	4	91566874	92184079	162	0.4979	SMALL-GAIN	FOCAL	1	CCSER1
TCGA.AG.A008.01A	4	100002462	100009754	4	0.4147	SMALL-GAIN	FOCAL	1	ADH5
TCGA.AA.3941	4	103075982	103117825	22	0.4353	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3867	4	103078616	103137711	27	0.6185	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	4	103225422	103560822	32	0.6188	SMALL-GAIN	FOCAL	3	"MANBA,NFKB1,SLC39A8"
TCGA.AA.A00N.01A	4	103822452	103912738	9	0.5303	SMALL-GAIN	FOCAL	1	SLC9B1
TCGA.AA.A00N.01A	4	104027329	104035572	4	0.4166	SMALL-GAIN	FOCAL	1	CENPE
TCGA.AA.A00N.01A	4	104070323	104101421	14	0.416	SMALL-GAIN	FOCAL	1	CENPE
TCGA.AG.A00C.01A	4	104106906	104117865	6	0.4782	SMALL-GAIN	FOCAL	1	CENPE
TCGA.CK.5914.01A	4	107268655	108824339	20	0.4472	SMALL-GAIN	FOCAL	5	"AIMP1,DKK2,GIMD1,PAPSS1,SGMS2"
TCGA.AA.A00N.01A	4	109543051	109588315	7	0.671	SMALL-GAIN	FOCAL	2	"OSTC,RPL34"
TCGA.AA.A010.01A	4	109543051	109683881	20	0.5707	SMALL-GAIN	FOCAL	3	"ETNPPL,OSTC,RPL34"
TCGA.CK.5914.01A	4	109683881	109863293	34	0.5925	SMALL-GAIN	FOCAL	2	"COL25A1,ETNPPL"
TCGA.AA.A00N.01A	4	109734996	110453758	60	0.507	SMALL-GAIN	FOCAL	2	"COL25A1,SEC24B"
TCGA.AA.A010.01A	4	110221677	110441475	14	0.6161	SMALL-GAIN	FOCAL	2	"COL25A1,SEC24B"
TCGA.AA.A02K.01A	4	110624441	110667362	8	0.5404	SMALL-GAIN	FOCAL	3	"CASP6,CFI,PLA2G12A"
TCGA.AG.3906.01A	4	110639776	110678829	9	0.4031	SMALL-GAIN	FOCAL	2	"CFI,PLA2G12A"
TCGA.CK.5914.01A	4	114170878	114386626	43	0.432	SMALL-GAIN	FOCAL	2	"ANK2,CAMK2D"
TCGA.AA.A010.01A	4	114421567	119154129	48	0.4565	SMALL-GAIN	FOCAL	6	"ARSJ,CAMK2D,NDST3,NDST4,TRAM1L1,UGT8"
TCGA.DY.A1DC	4	115550111	115629982	21	0.5067	SMALL-GAIN	FOCAL	1	UGT8
TCGA.A6.2686	4	119683132	119993882	126	0.6435	SMALL-GAIN	FOCAL	2	"SEC24D,SYNPO2"
TCGA.AG.3906.01A	4	119685949	119726971	4	0.568	SMALL-GAIN	FOCAL	1	SEC24D
TCGA.AA.A010.01A	4	119810151	120243125	31	0.515	SMALL-GAIN	FOCAL	5	"C4orf3,FABP2,MYOZ2,SYNPO2,USP53"
TCGA.CK.5914.01A	4	120419724	120463562	12	0.5728	SMALL-GAIN	FOCAL	1	PDE5A
TCGA.CK.5914.01A	4	120987752	121719433	8	0.516	SMALL-GAIN	FOCAL	2	"MAD2L1,PRDM5"
TCGA.AA.A00N.01A	4	121843620	122590707	23	0.4397	SMALL-GAIN	FOCAL	5	"ANXA5,NDNF,PRDM5,QRFPR,TNIP3"
TCGA.CK.5914.01A	4	122250452	122605780	16	0.3895	SMALL-GAIN	FOCAL	2	"ANXA5,QRFPR"
TCGA.AA.A00N.01A	4	122722514	122725767	4	0.4433	SMALL-GAIN	FOCAL	1	EXOSC9
TCGA.AZ.4684.01A	4	123166126	123377227	70	0.508	SMALL-GAIN	FOCAL	3	"ADAD1,IL2,KIAA1109"
TCGA.CK.5914.01A	4	123229056	123274937	27	0.6339	SMALL-GAIN	FOCAL	1	KIAA1109
TCGA.AA.A017.01A	4	123245534	123270276	16	0.6211	SMALL-GAIN	FOCAL	1	KIAA1109
TCGA.AG.A014.01A	4	123833664	123844250	4	0.6078	SMALL-GAIN	FOCAL	2	"NUDT6,SPATA5"
TCGA.CK.5914.01A	4	126315029	126367472	8	0.4902	SMALL-GAIN	FOCAL	1	FAT4
TCGA.AA.A00N.01A	4	128577734	128621150	7	0.6274	SMALL-GAIN	FOCAL	1	INTU
TCGA.AA.A00N.01A	4	128732543	128854100	26	0.6598	SMALL-GAIN	FOCAL	3	"HSPA4L,MFSD8,PLK4"
TCGA.AG.3906.01A	4	128859868	129019294	22	0.4299	SMALL-GAIN	FOCAL	3	"C4orf29,LARP1B,MFSD8"
TCGA.AG.A00C.01A	4	128949583	129012139	6	0.5965	SMALL-GAIN	FOCAL	2	"C4orf29,LARP1B"
TCGA.AG.3909.01A	4	129767483	129809795	11	0.3979	SMALL-GAIN	FOCAL	2	"JADE1,SCLT1"
TCGA.CK.5914.01A	4	129767483	129869635	16	0.5343	SMALL-GAIN	FOCAL	2	"JADE1,SCLT1"
TCGA.CK.4948.01B	4	129913256	129924869	4	0.4905	SMALL-GAIN	FOCAL	1	SCLT1
TCGA.DM.A1D4	4	130596601	131249635	173	0.4282	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A1HB	4	131727826	131786995	23	0.5854	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A1HB	4	135093115	135137507	9	0.6155	SMALL-GAIN	FOCAL	1	PABPC4L
TCGA.DY.A1DC	4	139266414	139301743	21	0.6171	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	4	139848070	140677869	191	0.463	SMALL-GAIN	FOCAL	9	"CCRN4L,ELF2,MAML3,MGARP,MGST2,NAA15,NDUFC1,RAB33B,SETD7"
TCGA.AZ.4684.01A	4	141294644	141464560	24	0.6226	SMALL-GAIN	FOCAL	4	"CLGN,ELMOD2,MGAT4D,SCOC"
TCGA.AA.A00N.01A	4	145627635	146080604	40	0.5239	SMALL-GAIN	FOCAL	4	"ABCE1,ANAPC10,HHIP,OTUD4"
TCGA.AA.A00N.01A	4	146435714	146576252	12	0.4425	SMALL-GAIN	FOCAL	2	"MMAA,SMAD1"
TCGA.AA.A02K.01A	4	148601428	148653404	3	0.385	SMALL-GAIN	FOCAL	1	PRMT9
TCGA.CK.5914.01A	4	151198964	151504145	17	0.4657	SMALL-GAIN	FOCAL	2	"LRBA,MAB21L2"
TCGA.CK.5914.01A	4	152198264	152583603	16	0.5954	SMALL-GAIN	FOCAL	2	"FAM160A1,PRSS48"
TCGA.AZ.4684.01A	4	153245299	153831195	27	0.5825	SMALL-GAIN	FOCAL	4	"ARFIP1,FBXW7,TIGD4,TMEM154"
TCGA.DC.6155	4	153288834	153450826	14	0.4469	SMALL-GAIN	FOCAL	1	FBXW7
TCGA.AG.A00Y.01A	4	154271149	154644452	44	0.4006	SMALL-GAIN	FOCAL	4	"KIAA0922,MND1,RNF175,TLR2"
TCGA.AG.3891.01A	4	154315352	154335856	4	0.5001	SMALL-GAIN	FOCAL	1	MND1
TCGA.D5.5538	4	162446204	164315583	488	0.4396	SMALL-GAIN	FOCAL	4	"FSTL5,NAF1,NPY1R,NPY5R"
TCGA.AA.A00N.01A	4	164415855	166009571	20	0.6105	SMALL-GAIN	FOCAL	8	"ANP32C,APELA,FAM218A,MARCH1,TMA16,TMEM192,TRIM60,TRIM61"
TCGA.CK.5914.01A	4	166964399	167656103	11	0.6512	SMALL-GAIN	FOCAL	2	"SPOCK3,TLL1"
TCGA.AA.A010.01A	4	167713273	169108480	17	0.4128	SMALL-GAIN	FOCAL	2	"ANXA10,SPOCK3"
TCGA.CK.4948.01B	4	169138033	169167537	9	0.4513	SMALL-GAIN	FOCAL	1	DDX60
TCGA.AA.A010.01A	4	169183782	169282231	23	0.4185	SMALL-GAIN	FOCAL	2	"DDX60,DDX60L"
TCGA.AA.A010.01A	4	169392871	169632691	12	0.5932	SMALL-GAIN	FOCAL	2	"DDX60L,PALLD"
TCGA.AA.A00N.01A	4	169432699	170458908	50	0.6532	SMALL-GAIN	FOCAL	4	"CBR4,NEK1,PALLD,SH3RF1"
TCGA.AA.A010.01A	4	170627999	170912560	12	0.4576	SMALL-GAIN	FOCAL	3	"C4orf27,CLCN3,MFAP3L"
TCGA.AG.3906.01A	4	170926694	171010732	13	0.5294	SMALL-GAIN	FOCAL	2	"AADAT,MFAP3L"
TCGA.AG.A011.01A	4	170982993	170999601	9	0.671	SMALL-GAIN	FOCAL	1	AADAT
TCGA.AY.6196	4	171626647	172240606	163	0.4091	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	4	171749240	171780106	16	0.5616	SMALL-GAIN	FOCAL	0	None
TCGA.CA.5254	4	172891426	172948883	23	0.6065	SMALL-GAIN	FOCAL	1	GALNTL6
TCGA.CK.5914.01A	4	173730460	174169114	10	0.5539	SMALL-GAIN	FOCAL	2	"GALNT7,GALNTL6"
TCGA.CK.5914.01A	4	174537039	175180803	5	0.4485	SMALL-GAIN	FOCAL	1	FBXO8
TCGA.CK.5914.01A	4	175443478	175580157	4	0.6475	SMALL-GAIN	FOCAL	2	"GLRA3,HPGD"
TCGA.AA.A00N.01A	4	175443478	177241181	64	0.6064	SMALL-GAIN	FOCAL	8	"ADAM29,ASB5,GLRA3,GPM6A,HPGD,SPATA4,SPCS3,WDR17"
TCGA.AA.A00N.01A	4	177605028	178283394	17	0.6286	SMALL-GAIN	FOCAL	2	"NEIL3,VEGFC"
TCGA.D5.5538	4	178055554	181501861	1265	0.4148	SMALL-GAIN	FOCAL	2	"AGA,NEIL3"
TCGA.AA.A00N.01A	4	178363352	183549757	10	0.3935	SMALL-GAIN	FOCAL	2	"AGA,TENM3"
TCGA.D5.5538	4	181707385	183892750	1020	0.4114	SMALL-GAIN	FOCAL	2	"DCTD,TENM3"
TCGA.AG.3909.01A	4	183600777	183635198	6	0.4582	SMALL-GAIN	FOCAL	1	TENM3
TCGA.AA.A00N.01A	4	183650069	183676091	10	0.4303	SMALL-GAIN	FOCAL	1	TENM3
TCGA.AG.3906.01A	4	183694578	184169840	16	0.4688	SMALL-GAIN	FOCAL	3	"DCTD,TENM3,WWC2"
TCGA.AA.A00N.01A	4	184114702	184365904	24	0.6191	SMALL-GAIN	FOCAL	4	"CDKN2AIP,CLDN22,CLDN24,WWC2"
TCGA.AG.A00C.01A	4	184366651	184601276	17	0.442	SMALL-GAIN	FOCAL	4	"CDKN2AIP,ING2,RWDD4,TRAPPC11"
TCGA.AA.A010.01A	4	186185560	186366590	45	0.411	SMALL-GAIN	FOCAL	6	"ANKRD37,C4orf47,CCDC110,LRP2BP,SNX25,UFSP2"
TCGA.AG.A00C.01A	4	186320040	186380227	17	0.4531	SMALL-GAIN	FOCAL	4	"ANKRD37,C4orf47,CCDC110,UFSP2"
TCGA.AA.A010.01A	4	186392052	186429403	6	0.424	SMALL-GAIN	FOCAL	2	"CCDC110,PDLIM3"
TCGA.AA.A00N.01A	4	186392733	186611644	36	0.5002	SMALL-GAIN	FOCAL	3	"CCDC110,PDLIM3,SORBS2"
TCGA.AG.A00C.01A	4	186997753	187005772	4	0.6391	SMALL-GAIN	FOCAL	1	TLR3
TCGA.AG.3906.01A	4	186997753	187093008	14	0.4094	SMALL-GAIN	FOCAL	2	"FAM149A,TLR3"
TCGA.AA.A00N.01A	4	187149302	187201139	19	0.4544	SMALL-GAIN	FOCAL	2	"F11,KLKB1"
TCGA.AA.A010.01A	4	187149302	187584433	52	0.6399	SMALL-GAIN	FOCAL	4	"F11,FAT1,KLKB1,MTNR1A"
TCGA.AA.A00N.01A	4	187209557	187584433	27	0.6206	SMALL-GAIN	FOCAL	3	"F11,FAT1,MTNR1A"
TCGA.D5.5538	4	187655511	188449086	286	0.423	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	4	188650232	189453247	233	0.41355	SMALL-GAIN	FOCAL	3	"TRIML1,TRIML2,ZFP42"
TCGA.AA.A010.01A	4	188925959	190864293	14	0.6398	SMALL-GAIN	FOCAL	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AG.3906.01A	4	189060662	189067925	5	0.522	SMALL-GAIN	FOCAL	1	TRIML1
TCGA.AA.A00N.01A	4	189060662	190862099	6	0.5574	SMALL-GAIN	FOCAL	2	"FRG1,TRIML1"
TCGA.D5.5538	4	189578978	190921708	368	0.3963	SMALL-GAIN	FOCAL	1	FRG1
TCGA.AZ.6606	5	51454	113576	6	0.407	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01Q.01A	5	140393	162828	10	0.4745	SMALL-GAIN	FOCAL	1	PLEKHG4B
TCGA.AA.A01Q.01A	5	647903	677928	5	0.4125	SMALL-GAIN	FOCAL	2	"CEP72,TPPP"
TCGA.AA.A01F.01A	5	814794	1421969	103	0.4437	SMALL-GAIN	FOCAL	10	"BRD9,CLPTM1L,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC6A3,TERT,TRIP13,ZDHHC11"
TCGA.AZ.5403	5	956670	1800435	233	0.5331	SMALL-GAIN	FOCAL	9	"CLPTM1L,LPCAT1,MRPL36,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC6A3,TERT"
TCGA.AA.A01Q.01A	5	1034300	1093610	24	0.3819	SMALL-GAIN	FOCAL	2	"NKD2,SLC12A7"
TCGA.AA.A00F.01A	5	1201737	1880802	75	0.6349	SMALL-GAIN	FOCAL	9	"CLPTM1L,IRX4,LPCAT1,MRPL36,NDUFS6,SLC6A18,SLC6A19,SLC6A3,TERT"
TCGA.AM.5820	5	1379761	1670368	79	0.5443	SMALL-GAIN	FOCAL	2	"LPCAT1,SLC6A3"
TCGA.AA.A01Q.01A	5	1400965	1432580	11	0.4026	SMALL-GAIN	FOCAL	1	SLC6A3
TCGA.AA.3695	5	1427802	1507507	36	0.5933	SMALL-GAIN	FOCAL	2	"LPCAT1,SLC6A3"
TCGA.AA.A01F.01A	5	1488448	1880802	10	0.4449	SMALL-GAIN	FOCAL	4	"IRX4,LPCAT1,MRPL36,NDUFS6"
TCGA.AM.5820	5	1720275	1850219	56	0.4397	SMALL-GAIN	FOCAL	2	"MRPL36,NDUFS6"
TCGA.AA.3844	5	2034677	3552596	929	0.4414	SMALL-GAIN	FOCAL	2	"C5orf38,IRX2"
TCGA.AG.A01W.01A	5	2802480	5235194	9	0.3989	SMALL-GAIN	FOCAL	2	"ADAMTS16,IRX1"
TCGA.DM.A1HB	5	3235695	3269777	25	0.6295	SMALL-GAIN	FOCAL	0	None
TCGA.EI.6883	5	3801905	3897439	50	0.5703	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	5	5182193	5319095	18	0.6652	SMALL-GAIN	FOCAL	1	ADAMTS16
TCGA.CK.5914.01A	5	7886681	9379893	28	0.5972	SMALL-GAIN	FOCAL	2	"MTRR,SEMA5A"
TCGA.AA.3844	5	8685783	11579103	1468	0.4245	SMALL-GAIN	FOCAL	10	"ANKRD33B,CCT5,CMBL,CTNND2,DAP,FAM173B,MARCH6,ROPN1L,SEMA5A,TAS2R1"
TCGA.AG.3909.01A	5	9042972	10227541	23	0.5656	SMALL-GAIN	FOCAL	3	"FAM173B,SEMA5A,TAS2R1"
TCGA.AA.A01Q.01A	5	9044468	9224748	15	0.5838	SMALL-GAIN	FOCAL	1	SEMA5A
TCGA.AA.A010.01A	5	9044468	11346446	89	0.4601	SMALL-GAIN	FOCAL	10	"ANKRD33B,CCT5,CMBL,CTNND2,DAP,FAM173B,MARCH6,ROPN1L,SEMA5A,TAS2R1"
TCGA.AA.3941	5	10059604	10763655	307	0.3953	SMALL-GAIN	FOCAL	7	"ANKRD33B,CCT5,CMBL,DAP,FAM173B,MARCH6,ROPN1L"
TCGA.AA.A00N.01A	5	10402429	10417350	9	0.4118	SMALL-GAIN	FOCAL	1	6-Mar
TCGA.AG.3909.01A	5	10464913	13793577	55	0.5392	SMALL-GAIN	FOCAL	5	"ANKRD33B,CTNND2,DAP,DNAH5,ROPN1L"
TCGA.CK.5914.01A	5	10681120	13794018	57	0.5967	SMALL-GAIN	FOCAL	3	"CTNND2,DAP,DNAH5"
TCGA.AA.A02E.01A	5	10683564	14369475	116	0.6295	SMALL-GAIN	FOCAL	4	"CTNND2,DAP,DNAH5,TRIO"
TCGA.AA.A01C.01A	5	11022850	13788793	44	0.4587	SMALL-GAIN	FOCAL	2	"CTNND2,DNAH5"
TCGA.AA.A02H.01A	5	11111007	14330850	98	0.4324	SMALL-GAIN	FOCAL	3	"CTNND2,DNAH5,TRIO"
TCGA.AA.3872	5	11514618	11544597	12	0.6379	SMALL-GAIN	FOCAL	1	CTNND2
TCGA.AG.3909.01A	5	13829588	14358239	48	0.3863	SMALL-GAIN	FOCAL	2	"DNAH5,TRIO"
TCGA.CK.5914.01A	5	13830678	14358239	46	0.4158	SMALL-GAIN	FOCAL	2	"DNAH5,TRIO"
TCGA.AA.3666	5	13932116	14278513	188	0.4524	SMALL-GAIN	FOCAL	2	"DNAH5,TRIO"
TCGA.AA.3844	5	13964587	15075453	435	0.6057	SMALL-GAIN	FOCAL	4	"ANKH,FAM105A,OTULIN,TRIO"
TCGA.AA.3941	5	14332324	14534617	72	0.5792	SMALL-GAIN	FOCAL	1	TRIO
TCGA.AA.3666	5	14366839	17503950	990	0.4374	SMALL-GAIN	FOCAL	10	"ANKH,BASP1,FAM105A,FAM134B,FBXL7,MARCH11,MYO10,OTULIN,TRIO,ZNF622"
TCGA.AA.A01Q.01A	5	14397104	14465604	9	0.444	SMALL-GAIN	FOCAL	1	TRIO
TCGA.CK.5914.01A	5	14405936	14461087	4	0.5651	SMALL-GAIN	FOCAL	1	TRIO
TCGA.AG.A01W.01A	5	14458937	14459633	2	0.6172	SMALL-GAIN	FOCAL	1	TRIO
TCGA.AG.A00C.01A	5	14465604	14485172	11	0.65	SMALL-GAIN	FOCAL	1	TRIO
TCGA.AG.3891.01A	5	14471385	14498579	16	0.3908	SMALL-GAIN	FOCAL	1	TRIO
TCGA.AG.3909.01A	5	14681521	15616035	17	0.5407	SMALL-GAIN	FOCAL	3	"ANKH,FBXL7,OTULIN"
TCGA.AA.A00N.01A	5	14681521	16090966	23	0.6082	SMALL-GAIN	FOCAL	4	"ANKH,FBXL7,MARCH11,OTULIN"
TCGA.AA.A010.01A	5	14711268	16935821	74	0.5425	SMALL-GAIN	FOCAL	6	"ANKH,FAM134B,FBXL7,MARCH11,MYO10,ZNF622"
TCGA.AA.A00N.01A	5	16508613	17275294	43	0.5281	SMALL-GAIN	FOCAL	3	"BASP1,FAM134B,MYO10"
TCGA.AA.3844	5	16517129	17797639	406	0.5772	SMALL-GAIN	FOCAL	3	"BASP1,FAM134B,MYO10"
TCGA.AA.3850	5	16522124	17213364	277	0.42035	SMALL-GAIN	FOCAL	2	"FAM134B,MYO10"
TCGA.AG.3909.01A	5	16754881	31552848	123	0.4123	SMALL-GAIN	FOCAL	10	"BASP1,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,MYO10,PRDM9"
TCGA.NH.A6GA	5	18610175	18664940	16	0.517	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	5	19473293	19747004	10	0.428	SMALL-GAIN	FOCAL	1	CDH18
TCGA.AZ.4684.01A	5	19473293	21802269	16	0.6484	SMALL-GAIN	FOCAL	2	"CDH12,CDH18"
TCGA.AA.3509.01A	5	19473293	22078524	20	0.6294	SMALL-GAIN	FOCAL	2	"CDH12,CDH18"
TCGA.CK.5914.01A	5	19838818	31472123	73	0.4361	SMALL-GAIN	FOCAL	7	"CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,PRDM9"
TCGA.AA.3509.01A	5	23524396	31429516	44	0.6149	SMALL-GAIN	FOCAL	5	"CDH10,CDH6,CDH9,DROSHA,PRDM9"
TCGA.AA.3850	5	31523596	31546290	7	0.59375	SMALL-GAIN	FOCAL	2	"C5orf22,DROSHA"
TCGA.AA.3941	5	31523596	32780290	483	0.3851	SMALL-GAIN	FOCAL	8	"C5orf22,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,SUB1,ZFR"
TCGA.AA.3850	5	31559288	32772335	467	0.38755	SMALL-GAIN	FOCAL	6	"GOLPH3,MTMR12,NPR3,PDZD2,SUB1,ZFR"
TCGA.AG.3909.01A	5	32229865	32276732	15	0.5074	SMALL-GAIN	FOCAL	1	MTMR12
TCGA.AG.3909.01A	5	32724753	33441125	10	0.6573	SMALL-GAIN	FOCAL	2	"NPR3,TARS"
TCGA.AG.3909.01A	5	33549271	33881185	20	0.6334	SMALL-GAIN	FOCAL	1	ADAMTS12
TCGA.AG.3906.01A	5	34914752	34919865	3	0.562	SMALL-GAIN	FOCAL	2	"BRIX1,RAD1"
TCGA.AG.A00C.01A	5	34922609	34949616	13	0.422	SMALL-GAIN	FOCAL	2	"BRIX1,DNAJC21"
TCGA.AG.3906.01A	5	34949616	34953978	3	0.5115	SMALL-GAIN	FOCAL	1	DNAJC21
TCGA.CK.5914.01A	5	36181881	36219643	10	0.5132	SMALL-GAIN	FOCAL	2	"NADK2,SKP2"
TCGA.AA.A00F.01A	5	36219643	36265009	11	0.3954	SMALL-GAIN	FOCAL	2	"NADK2,RANBP3L"
TCGA.AG.3906.01A	5	36225588	36262001	11	0.4832	SMALL-GAIN	FOCAL	2	"NADK2,RANBP3L"
TCGA.AG.3909.01A	5	36269971	36674074	7	0.4414	SMALL-GAIN	FOCAL	2	"RANBP3L,SLC1A3"
TCGA.AA.3867	5	36270927	36927651	268	0.618	SMALL-GAIN	FOCAL	3	"NIPBL,RANBP3L,SLC1A3"
TCGA.AA.A00F.01A	5	36674074	36686117	6	0.4647	SMALL-GAIN	FOCAL	1	SLC1A3
TCGA.AA.A010.01A	5	36683914	36972005	9	0.4624	SMALL-GAIN	FOCAL	2	"NIPBL,SLC1A3"
TCGA.AG.A01W.01A	5	36719672	37052838	26	0.3806	SMALL-GAIN	FOCAL	1	NIPBL
TCGA.CK.5914.01A	5	36962173	36995697	7	0.4104	SMALL-GAIN	FOCAL	1	NIPBL
TCGA.AA.A00F.01A	5	37006442	37036469	15	0.4435	SMALL-GAIN	FOCAL	1	NIPBL
TCGA.AA.A00N.01A	5	37036469	37051870	8	0.4202	SMALL-GAIN	FOCAL	1	NIPBL
TCGA.AG.3909.01A	5	37051870	37125306	14	0.4705	SMALL-GAIN	FOCAL	2	"C5orf42,NIPBL"
TCGA.AA.A00N.01A	5	37108354	37230922	43	0.3898	SMALL-GAIN	FOCAL	1	C5orf42
TCGA.AG.A01W.01A	5	37209568	37216665	6	0.6093	SMALL-GAIN	FOCAL	1	C5orf42
TCGA.AG.3906.01A	5	37291954	37303344	8	0.5303	SMALL-GAIN	FOCAL	1	NUP155
TCGA.AA.3930.01A	5	37291954	37314293	14	0.466	SMALL-GAIN	FOCAL	1	NUP155
TCGA.AA.A00F.01A	5	37291954	37324046	16	0.4903	SMALL-GAIN	FOCAL	1	NUP155
TCGA.AG.3909.01A	5	37337901	37379401	13	0.6135	SMALL-GAIN	FOCAL	1	NUP155
TCGA.CK.5914.01A	5	37605129	38438330	30	0.3846	SMALL-GAIN	FOCAL	4	"EGFLAM,GDNF,GDNF-AS1,WDR70"
TCGA.AG.3906.01A	5	38869102	38886124	6	0.544	SMALL-GAIN	FOCAL	1	OSMR
TCGA.AG.3909.01A	5	39364428	39394329	15	0.4783	SMALL-GAIN	FOCAL	2	"C9,DAB2"
TCGA.AA.A00F.01A	5	39364428	40798113	23	0.4488	SMALL-GAIN	FOCAL	5	"C9,DAB2,PRKAA1,PTGER4,TTC33"
TCGA.AG.A00C.01A	5	40716200	40777500	12	0.4411	SMALL-GAIN	FOCAL	2	"PRKAA1,TTC33"
TCGA.AG.3909.01A	5	40832541	41381891	83	0.5257	SMALL-GAIN	FOCAL	6	"C6,C7,CARD6,MROH2B,PLCXD3,RPL37"
TCGA.AA.A017.01A	5	40841518	41012633	35	0.515	SMALL-GAIN	FOCAL	3	"C7,CARD6,MROH2B"
TCGA.AZ.4684.01A	5	41045809	42779501	80	0.4596	SMALL-GAIN	FOCAL	8	"C5orf51,C6,CCDC152,FBXO4,GHR,MROH2B,OXCT1,PLCXD3"
TCGA.AA.A017.01A	5	41064547	41904438	44	0.438	SMALL-GAIN	FOCAL	4	"C6,MROH2B,OXCT1,PLCXD3"
TCGA.CK.5914.01A	5	41149305	41840497	31	0.6117	SMALL-GAIN	FOCAL	3	"C6,OXCT1,PLCXD3"
TCGA.AA.A00F.01A	5	41861374	41941242	15	0.3901	SMALL-GAIN	FOCAL	3	"C5orf51,FBXO4,OXCT1"
TCGA.AA.A010.01A	5	41862697	43277110	47	0.5211	SMALL-GAIN	FOCAL	9	"ANXA2R,C5orf51,CCDC152,FBXO4,GHR,NIM1K,OXCT1,SEPP1,ZNF131"
TCGA.AG.3891.01A	5	43122107	43174537	7	0.3843	SMALL-GAIN	FOCAL	1	ZNF131
TCGA.AA.A00N.01A	5	43161299	43291178	8	0.546	SMALL-GAIN	FOCAL	3	"HMGCS1,NIM1K,ZNF131"
TCGA.AA.A00F.01A	5	43486966	43619121	26	0.5639	SMALL-GAIN	FOCAL	3	"C5orf34,NNT,PAIP1"
TCGA.AG.A00C.01A	5	43486966	43619121	26	0.5563	SMALL-GAIN	FOCAL	3	"C5orf34,NNT,PAIP1"
TCGA.AA.A017.01A	5	43624082	43651794	8	0.6075	SMALL-GAIN	FOCAL	1	NNT
TCGA.AA.A017.01A	5	45396586	49723923	11	0.5979	SMALL-GAIN	FOCAL	2	"EMB,HCN1"
TCGA.AZ.4614	5	46383334	53045440	913	0.5432	SMALL-GAIN	FOCAL	9	"EMB,FST,ISL1,ITGA1,ITGA2,MOCS2,NDUFS4,PARP8,PELO"
TCGA.D5.6535	5	49560858	49710709	29	0.5836	SMALL-GAIN	FOCAL	1	EMB
TCGA.AA.3509.01A	5	49706669	52374550	84	0.6234	SMALL-GAIN	FOCAL	6	"EMB,ISL1,ITGA1,ITGA2,PARP8,PELO"
TCGA.CK.5914.01A	5	50090024	50137783	15	0.478	SMALL-GAIN	FOCAL	1	PARP8
TCGA.AG.3909.01A	5	50111226	50137783	12	0.3984	SMALL-GAIN	FOCAL	1	PARP8
TCGA.AA.A017.01A	5	50118100	50137783	10	0.6316	SMALL-GAIN	FOCAL	1	PARP8
TCGA.AA.A010.01A	5	50680338	52285240	35	0.5446	SMALL-GAIN	FOCAL	4	"ISL1,ITGA1,ITGA2,PELO"
TCGA.G5.6641	5	50928870	52674670	576	0.549	SMALL-GAIN	FOCAL	4	"ITGA1,ITGA2,MOCS2,PELO"
TCGA.AA.3939.01A	5	52097224	52397890	60	0.4293	SMALL-GAIN	FOCAL	4	"ITGA1,ITGA2,MOCS2,PELO"
TCGA.CK.5914.01A	5	52145147	52161477	4	0.523	SMALL-GAIN	FOCAL	1	ITGA1
TCGA.AA.A01C.01A	5	52243138	52347194	9	0.4609	SMALL-GAIN	FOCAL	2	"ITGA1,ITGA2"
TCGA.AA.A00N.01A	5	52856441	54442404	39	0.6194	SMALL-GAIN	FOCAL	8	"ARL15,CDC20B,ESM1,GZMA,GZMK,HSPB3,NDUFS4,SNX18"
TCGA.AG.3909.01A	5	52856441	54442404	38	0.4421	SMALL-GAIN	FOCAL	8	"ARL15,CDC20B,ESM1,GZMA,GZMK,HSPB3,NDUFS4,SNX18"
TCGA.AA.3867	5	53376835	53510500	56	0.4744	SMALL-GAIN	FOCAL	1	ARL15
TCGA.DC.6155	5	55746341	55854152	74	0.5453	SMALL-GAIN	FOCAL	1	C5orf67
TCGA.CK.5914.01A	5	56542080	56778012	8	0.4396	SMALL-GAIN	FOCAL	2	"ACTBL2,GPBP1"
TCGA.EI.6508	5	58318308	58371238	26	0.601	SMALL-GAIN	FOCAL	1	PDE4D
TCGA.AA.A010.01A	5	60050413	60368908	21	0.4683	SMALL-GAIN	FOCAL	3	"ELOVL7,ERCC8,NDUFAF2"
TCGA.AZ.6603	5	60642346	62846972	673	0.4045	SMALL-GAIN	FOCAL	6	"C5orf64,DIMT1,IPO11,KIF2A,LRRC70,ZSWIM6"
TCGA.CK.5914.01A	5	60786575	61602253	15	0.6268	SMALL-GAIN	FOCAL	3	"C5orf64,KIF2A,ZSWIM6"
TCGA.CK.5914.01A	5	63871553	64181219	20	0.6406	SMALL-GAIN	FOCAL	4	"CWC27,FAM159B,RGS7BP,SREK1IP1"
TCGA.DM.A28M.01A	5	64867666	66440945	126	0.4478	SMALL-GAIN	FOCAL	8	"ERBB2IP,MAST4,NLN,PPWD1,SGTB,SREK1,TRAPPC13,TRIM23"
TCGA.AG.A01W.01A	5	64914574	64923306	7	0.4835	SMALL-GAIN	FOCAL	2	"TRAPPC13,TRIM23"
TCGA.CK.5914.01A	5	64951445	64967990	8	0.4166	SMALL-GAIN	FOCAL	2	"SGTB,TRAPPC13"
TCGA.AA.A00N.01A	5	65018145	66437896	82	0.4643	SMALL-GAIN	FOCAL	4	"ERBB2IP,MAST4,NLN,SREK1"
TCGA.G4.6315	5	68154299	68187067	10	0.6296	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	5	68720369	68843709	11	0.642	SMALL-GAIN	FOCAL	2	"MARVELD2,OCLN"
TCGA.AA.A010.01A	5	70307065	70791060	26	0.6572	SMALL-GAIN	FOCAL	3	"BDP1,GTF2H2,NAIP"
TCGA.AG.A00C.01A	5	70800431	70900142	30	0.4808	SMALL-GAIN	FOCAL	2	"BDP1,MCCC2"
TCGA.AA.3870	5	70800474	70881331	17	0.4129	SMALL-GAIN	FOCAL	1	BDP1
TCGA.AA.A010.01A	5	70888700	71500889	26	0.4925	SMALL-GAIN	FOCAL	3	"CARTPT,MAP1B,MCCC2"
TCGA.D5.6932	5	72205438	73933977	721	0.4811	SMALL-GAIN	FOCAL	10	"ANKRA2,ARHGEF28,BTF3,ENC1,FCHO2,FOXD1,TMEM171,TMEM174,TNPO1,UTP15"
TCGA.AA.A010.01A	5	72330419	72351877	8	0.4701	SMALL-GAIN	FOCAL	1	FCHO2
TCGA.AA.A010.01A	5	72794904	73136278	34	0.6378	SMALL-GAIN	FOCAL	4	"ANKRA2,ARHGEF28,BTF3,UTP15"
TCGA.AA.A00N.01A	5	72851266	72875685	15	0.5597	SMALL-GAIN	FOCAL	2	"ANKRA2,UTP15"
TCGA.AA.A00N.01A	5	73144754	73168777	9	0.5335	SMALL-GAIN	FOCAL	1	ARHGEF28
TCGA.AA.A00N.01A	5	74009291	74137323	43	0.4215	SMALL-GAIN	FOCAL	4	"FAM169A,GFM2,HEXB,NSA2"
TCGA.CK.5914.01A	5	74016212	74047145	17	0.5122	SMALL-GAIN	FOCAL	2	"GFM2,HEXB"
TCGA.CK.5914.01A	5	74100934	74137323	6	0.383	SMALL-GAIN	FOCAL	1	FAM169A
TCGA.AA.A00N.01A	5	74654944	75505530	49	0.4455	SMALL-GAIN	FOCAL	6	"ANKDD1B,COL4A3BP,HMGCR,POC5,POLK,SV2C"
TCGA.AA.3844	5	75300951	75347943	26	0.4711	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	5	75388833	75922503	264	0.452	SMALL-GAIN	FOCAL	3	"F2RL2,IQGAP2,SV2C"
TCGA.AG.3909.01A	5	75871470	75979583	28	0.4058	SMALL-GAIN	FOCAL	2	"F2RL2,IQGAP2"
TCGA.AG.A00C.01A	5	76249803	76358895	19	0.4426	SMALL-GAIN	FOCAL	2	"AGGF1,CRHBP"
TCGA.AG.3906.01A	5	76330196	76357491	12	0.5074	SMALL-GAIN	FOCAL	1	AGGF1
TCGA.AG.A008.01A	5	76331334	76358895	12	0.4438	SMALL-GAIN	FOCAL	1	AGGF1
TCGA.AG.3909.01A	5	79024738	79095145	16	0.4555	SMALL-GAIN	FOCAL	1	CMYA5
TCGA.AZ.4684.01A	5	82360779	86637023	47	0.4789	SMALL-GAIN	FOCAL	7	"COX7C,EDIL3,HAPLN1,RASA1,TMEM167A,VCAN,XRCC4"
TCGA.AG.3909.01A	5	88018400	89769604	17	0.4076	SMALL-GAIN	FOCAL	3	"CETN3,MBLAC2,MEF2C"
TCGA.AG.3909.01A	5	90261180	90667169	8	0.4655	SMALL-GAIN	FOCAL	2	"ADGRV1,ARRDC3"
TCGA.AA.3844	5	90321287	90867638	141	0.3842	SMALL-GAIN	FOCAL	2	"ADGRV1,ARRDC3"
TCGA.AA.A01F.01A	5	93386385	93855986	4	0.4664	SMALL-GAIN	FOCAL	2	"FAM172A,KIAA0825"
TCGA.G4.6298	5	93812884	94801946	279	0.5203	SMALL-GAIN	FOCAL	5	"ANKRD32,FAM81B,KIAA0825,MCTP1,TTC37"
TCGA.CK.5914.01A	5	94043140	94230304	13	0.6236	SMALL-GAIN	FOCAL	1	MCTP1
TCGA.AA.3844	5	94605371	94744240	44	0.4525	SMALL-GAIN	FOCAL	2	"FAM81B,MCTP1"
TCGA.AA.3844	5	94811453	95236414	122	0.5047	SMALL-GAIN	FOCAL	8	"ARSK,ELL2,GLRX,GPR150,RFESD,RHOBTB3,SPATA9,TTC37"
TCGA.AA.A02K.01A	5	94872480	94901656	8	0.456	SMALL-GAIN	FOCAL	2	"ARSK,TTC37"
TCGA.AA.A00N.01A	5	95011118	96124213	80	0.3859	SMALL-GAIN	FOCAL	7	"CAST,ELL2,ERAP1,GLRX,PCSK1,RHOBTB3,SPATA9"
TCGA.AA.A00N.01A	5	96215352	101795318	121	0.4963	SMALL-GAIN	FOCAL	10	"CHD1,ERAP2,FAM174A,LIX1,LNPEP,RGMB,RIOK2,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.AA.A017.01A	5	96460143	96518766	12	0.653	SMALL-GAIN	FOCAL	2	"LIX1,RIOK2"
TCGA.AA.A00N.01A	5	102237012	102444256	30	0.5885	SMALL-GAIN	FOCAL	2	"GIN1,PAM"
TCGA.CK.5914.01A	5	110427955	110819676	34	0.4336	SMALL-GAIN	FOCAL	2	"CAMK4,WDR36"
TCGA.AA.A01C.01A	5	110436281	110454674	13	0.3957	SMALL-GAIN	FOCAL	1	WDR36
TCGA.AA.3509.01A	5	110459506	110710483	7	0.5879	SMALL-GAIN	FOCAL	2	"CAMK4,WDR36"
TCGA.AA.3850	5	110703717	110723380	3	0.39185	SMALL-GAIN	FOCAL	1	CAMK4
TCGA.CK.5914.01A	5	114548050	114598361	9	0.5995	SMALL-GAIN	FOCAL	1	PGGT1B
TCGA.AA.A00N.01A	5	115230737	118264205	49	0.5469	SMALL-GAIN	FOCAL	6	"AP3S1,ARL14EPL,COMMD10,DTWD2,LVRN,SEMA6A"
TCGA.AA.3941	5	115512124	115512540	4	0.406	SMALL-GAIN	FOCAL	1	COMMD10
TCGA.AA.3844	5	115888521	116253556	196	0.4001	SMALL-GAIN	FOCAL	1	SEMA6A
TCGA.AA.3941	5	118299215	118468657	18	0.4044	SMALL-GAIN	FOCAL	2	"DMXL1,DTWD2"
TCGA.AA.A00N.01A	5	118500155	118811335	32	0.6354	SMALL-GAIN	FOCAL	3	"DMXL1,HSD17B4,TNFAIP8"
TCGA.AA.3941	5	118690780	118797688	26	0.4765	SMALL-GAIN	FOCAL	2	"HSD17B4,TNFAIP8"
TCGA.CK.5914.01A	5	121412551	122135345	19	0.4378	SMALL-GAIN	FOCAL	5	"LOC100505841,LOX,SNCAIP,SNX2,ZNF474"
TCGA.AA.A02K.01A	5	122272371	125928290	93	0.3878	SMALL-GAIN	FOCAL	8	"ALDH7A1,CEP120,CSNK1G3,GRAMD3,PPIC,PRDM6,SNX24,ZNF608"
TCGA.AA.A00N.01A	5	122758567	122949998	14	0.5709	SMALL-GAIN	FOCAL	2	"CEP120,CSNK1G3"
TCGA.AA.A00N.01A	5	124036695	125912723	31	0.4418	SMALL-GAIN	FOCAL	3	"ALDH7A1,GRAMD3,ZNF608"
TCGA.AA.3850	5	125771238	126254479	121	0.46925	SMALL-GAIN	FOCAL	6	"ALDH7A1,GRAMD3,LMNB1,MARCH3,PHAX,TEX43"
TCGA.AA.3941	5	125778934	126245897	117	0.4566	SMALL-GAIN	FOCAL	6	"ALDH7A1,GRAMD3,LMNB1,MARCH3,PHAX,TEX43"
TCGA.AA.3844	5	125778934	126260523	119	0.6315	SMALL-GAIN	FOCAL	6	"ALDH7A1,GRAMD3,LMNB1,MARCH3,PHAX,TEX43"
TCGA.AA.A02K.01A	5	125929029	125971688	10	0.6559	SMALL-GAIN	FOCAL	3	"ALDH7A1,PHAX,TEX43"
TCGA.CK.5914.01A	5	126145823	126792773	36	0.4269	SMALL-GAIN	FOCAL	4	"C5orf63,LMNB1,MARCH3,MEGF10"
TCGA.CK.5914.01A	5	127471365	127610222	26	0.5726	SMALL-GAIN	FOCAL	2	"FBN2,SLC12A2"
TCGA.DM.A28M.01A	5	127595106	129240952	102	0.4687	SMALL-GAIN	FOCAL	6	"ADAMTS19,CHSY3,FBN2,ISOC1,KIAA1024L,SLC27A6"
TCGA.AG.3909.01A	5	128844723	129072719	21	0.3928	SMALL-GAIN	FOCAL	1	ADAMTS19
TCGA.AA.3844	5	130304208	131447103	215	0.5248	SMALL-GAIN	FOCAL	9	"ACSL6,CDC42SE2,CSF2,FNIP1,HINT1,IL3,LYRM7,MEIKIN,RAPGEF6"
TCGA.AA.A010.01A	5	130762870	131295164	49	0.5347	SMALL-GAIN	FOCAL	4	"ACSL6,FNIP1,MEIKIN,RAPGEF6"
TCGA.AM.5820	5	131312326	131436960	51	0.4396	SMALL-GAIN	FOCAL	3	"ACSL6,CSF2,IL3"
TCGA.AA.3844	5	131521294	131872864	128	0.6013	SMALL-GAIN	FOCAL	5	"IRF1,P4HA2,PDLIM4,SLC22A4,SLC22A5"
TCGA.NH.A6GA	5	131872382	132055503	49	0.4411	SMALL-GAIN	FOCAL	5	"IL13,IL4,IL5,KIF3A,RAD50"
TCGA.CK.5914.01A	5	131911422	131944758	17	0.4756	SMALL-GAIN	FOCAL	1	RAD50
TCGA.AA.A00N.01A	5	131911422	131953713	19	0.4979	SMALL-GAIN	FOCAL	1	RAD50
TCGA.CK.5914.01A	5	132015354	132061765	18	0.3984	SMALL-GAIN	FOCAL	2	"IL4,KIF3A"
TCGA.A6.3808.01A	5	132018127	132109785	36	0.4878	SMALL-GAIN	FOCAL	4	"CCNI2,IL4,KIF3A,SEPT8"
TCGA.AG.A00C.01A	5	132061765	132197234	22	0.4343	SMALL-GAIN	FOCAL	6	"CCNI2,GDF9,KIF3A,SEPT8,SHROOM1,SOWAHA"
TCGA.AG.3906.01A	5	132083989	132160255	17	0.3959	SMALL-GAIN	FOCAL	4	"CCNI2,SEPT8,SHROOM1,SOWAHA"
TCGA.AA.A010.01A	5	133493345	134154503	99	0.4994	SMALL-GAIN	FOCAL	10	"CAMLG,CDKL3,CDKN2AIPNL,DDX46,JADE2,PPP2CA,SAR1B,SEC24A,SKP1,UBE2B"
TCGA.AA.A00D.01A	5	134099546	134113251	5	0.4338	SMALL-GAIN	FOCAL	1	DDX46
TCGA.AA.A00N.01A	5	134294683	134345023	8	0.4889	SMALL-GAIN	FOCAL	2	"CATSPER3,PCBD2"
TCGA.AA.A00Q.01A	5	135388547	135692269	9	0.5357	SMALL-GAIN	FOCAL	3	"SMAD5,TGFBI,TRPC7"
TCGA.AA.A00D.01A	5	135416131	135651238	7	0.4124	SMALL-GAIN	FOCAL	2	"SMAD5,TRPC7"
TCGA.AA.A00N.01A	5	137241848	137323882	24	0.5142	SMALL-GAIN	FOCAL	2	"FAM13B,PKD2L2"
TCGA.AG.3909.01A	5	137241848	137342632	25	0.3813	SMALL-GAIN	FOCAL	2	"FAM13B,PKD2L2"
TCGA.AA.A00N.01A	5	137486406	137548640	47	0.6737	SMALL-GAIN	FOCAL	3	"BRD8,CDC23,KIF20A"
TCGA.AG.3909.01A	5	137492855	137513216	21	0.5071	SMALL-GAIN	FOCAL	1	BRD8
TCGA.AG.A01L.01A	5	137514195	137527096	17	0.3977	SMALL-GAIN	FOCAL	3	"BRD8,CDC23,KIF20A"
TCGA.AG.3909.01A	5	137520214	137548640	16	0.4641	SMALL-GAIN	FOCAL	2	"CDC23,KIF20A"
TCGA.AA.A01F.01A	5	137891667	137897221	8	0.4484	SMALL-GAIN	FOCAL	1	HSPA9
TCGA.AA.A00N.01A	5	138160237	138362449	20	0.5847	SMALL-GAIN	FOCAL	3	"CTNNA1,LRRTM2,SIL1"
TCGA.AG.3891.01A	5	138650298	138718824	25	0.4625	SMALL-GAIN	FOCAL	3	"MATR3,PAIP2,SLC23A1"
TCGA.AG.3909.01A	5	138775026	139266878	37	0.4684	SMALL-GAIN	FOCAL	7	"CXXC5,DNAJC18,ECSCR,NRG2,PSD2,TMEM173,UBE2D2"
TCGA.CK.5914.01A	5	138837073	138860713	8	0.5722	SMALL-GAIN	FOCAL	2	"ECSCR,TMEM173"
TCGA.AG.3906.01A	5	138994085	139500919	31	0.6054	SMALL-GAIN	FOCAL	5	"CXXC5,NRG2,PSD2,PURA,UBE2D2"
TCGA.AG.A01W.01A	5	139842297	139846681	4	0.5228	SMALL-GAIN	FOCAL	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AG.3909.01A	5	140070394	140085169	17	0.3916	SMALL-GAIN	FOCAL	3	"HARS,HARS2,ZMAT2"
TCGA.AZ.4684.01A	5	140221245	140237299	12	0.6212	SMALL-GAIN	FOCAL	10	"PCDHA1,PCDHA10,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.AG.A01W.01A	5	140454513	140576044	41	0.4548	SMALL-GAIN	FOCAL	10	"PCDHB10,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9"
TCGA.AG.A01W.01A	5	140725074	140735640	8	0.4652	SMALL-GAIN	FOCAL	5	"PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGB1"
TCGA.AZ.4684.01A	5	140957005	140967727	11	0.6483	SMALL-GAIN	FOCAL	1	DIAPH1
TCGA.AG.A00C.01A	5	141353124	141511340	14	0.5168	SMALL-GAIN	FOCAL	3	"GNPDA1,NDFIP1,RNF14"
TCGA.AA.A00N.01A	5	141511340	145246037	67	0.4187	SMALL-GAIN	FOCAL	10	"ARHGAP26,FGF1,GRXCR2,HMHB1,KCTD16,NDFIP1,NR3C1,PRELID2,SPRY4,YIPF5"
TCGA.CK.5914.01A	5	141515259	142662085	41	0.5067	SMALL-GAIN	FOCAL	5	"ARHGAP26,FGF1,NDFIP1,NR3C1,SPRY4"
TCGA.CK.5913	5	143452163	143470926	12	0.5705	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	5	145060736	145484895	155	0.4569	SMALL-GAIN	FOCAL	4	"GRXCR2,PLAC8L1,PRELID2,SH3RF2"
TCGA.CK.5914.01A	5	145214681	145383579	7	0.4677	SMALL-GAIN	FOCAL	3	"GRXCR2,PRELID2,SH3RF2"
TCGA.AA.A01Q.01A	5	145239246	145463978	13	0.6534	SMALL-GAIN	FOCAL	3	"GRXCR2,PLAC8L1,SH3RF2"
TCGA.CK.5914.01A	5	145435571	145523785	22	0.4936	SMALL-GAIN	FOCAL	3	"LARS,PLAC8L1,SH3RF2"
TCGA.AA.3844	5	145512950	145949060	111	0.5104	SMALL-GAIN	FOCAL	5	"GPR151,LARS,POU4F3,RBM27,TCERG1"
TCGA.CK.5914.01A	5	147803514	148016468	21	0.4823	SMALL-GAIN	FOCAL	2	"FBXO38,HTR4"
TCGA.AA.3844	5	148631432	149326062	257	0.6683	SMALL-GAIN	FOCAL	9	"ABLIM3,AFAP1L1,ARHGEF37,CSNK1A1,GRPEL2,IL17B,PCYOX1L,PDE6A,PPARGC1B"
TCGA.CK.5914.01A	5	148808443	149294452	58	0.551	SMALL-GAIN	FOCAL	4	"ARHGEF37,CSNK1A1,PDE6A,PPARGC1B"
TCGA.AG.3909.01A	5	149283168	149301139	4	0.388	SMALL-GAIN	FOCAL	1	PDE6A
TCGA.AA.3844	5	149326324	149424965	40	0.3885	SMALL-GAIN	FOCAL	3	"HMGXB3,SLC26A2,TIGD6"
TCGA.AA.A010.01A	5	149374298	149406543	10	0.6386	SMALL-GAIN	FOCAL	2	"HMGXB3,TIGD6"
TCGA.CK.5914.01A	5	149389657	149449389	26	0.6377	SMALL-GAIN	FOCAL	2	"CSF1R,HMGXB3"
TCGA.AM.5820	5	149413609	149453449	27	0.442	SMALL-GAIN	FOCAL	2	"CSF1R,HMGXB3"
TCGA.AM.5820	5	149499671	149910524	123	0.3793	SMALL-GAIN	FOCAL	9	"ARSI,CAMK2A,CD74,CDX1,NDST1,PDGFRB,RPS14,SLC6A7,TCOF1"
TCGA.AG.4009.01A	5	149602175	149652579	15	0.4157	SMALL-GAIN	FOCAL	1	CAMK2A
TCGA.AA.A010.01A	5	149624693	149932728	64	0.6313	SMALL-GAIN	FOCAL	6	"ARSI,CAMK2A,CD74,NDST1,RPS14,TCOF1"
TCGA.AG.A00C.01A	5	149740650	149758416	10	0.3865	SMALL-GAIN	FOCAL	1	TCOF1
TCGA.AA.3967.01A	5	149754139	149777865	13	0.5992	SMALL-GAIN	FOCAL	1	TCOF1
TCGA.CK.5914.01A	5	149758770	149997878	40	0.4868	SMALL-GAIN	FOCAL	5	"CD74,NDST1,RPS14,SYNPO,TCOF1"
TCGA.AG.3906.01A	5	149927739	150042434	7	0.5686	SMALL-GAIN	FOCAL	3	"MYOZ3,NDST1,SYNPO"
TCGA.AA.3982	5	150371634	150639438	138	0.4882	SMALL-GAIN	FOCAL	5	"ANXA6,CCDC69,GM2A,GPX3,TNIP1"
TCGA.AA.3844	5	150371634	150918068	276	0.6056	SMALL-GAIN	FOCAL	9	"ANXA6,CCDC69,FAT2,GM2A,GPX3,SLC36A1,SLC36A2,SLC36A3,TNIP1"
TCGA.AG.4009.01A	5	150404861	150436286	17	0.3829	SMALL-GAIN	FOCAL	2	"GPX3,TNIP1"
TCGA.AA.A010.01A	5	150722396	151055622	48	0.572	SMALL-GAIN	FOCAL	4	"FAT2,SLC36A1,SLC36A2,SPARC"
TCGA.AA.3844	5	150924768	151191230	107	0.5998	SMALL-GAIN	FOCAL	5	"ATOX1,FAT2,G3BP1,LOC100652758,SPARC"
TCGA.AA.3844	5	153364139	153410933	11	0.3958	SMALL-GAIN	FOCAL	1	FAM114A2
TCGA.AA.A010.01A	5	153413310	153796326	20	0.4177	SMALL-GAIN	FOCAL	3	"FAM114A2,GALNT10,MFAP3"
TCGA.AA.3844	5	153460042	154593776	356	0.53	SMALL-GAIN	FOCAL	9	"CNOT8,FAXDC2,GALNT10,GEMIN5,HAND1,KIF4B,LARP1,MRPL22,SAP30L"
TCGA.AA.A010.01A	5	154173108	154287160	37	0.407	SMALL-GAIN	FOCAL	4	"CNOT8,FAXDC2,GEMIN5,LARP1"
TCGA.AA.A00N.01A	5	154254840	154296521	17	0.5508	SMALL-GAIN	FOCAL	2	"CNOT8,GEMIN5"
TCGA.AA.3844	5	154601556	154686637	29	0.4867	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	5	156319074	156623903	90	0.5928	SMALL-GAIN	FOCAL	6	"FAM71B,HAVCR1,HAVCR2,ITK,MED7,TIMD4"
TCGA.AG.3909.01A	5	156476000	156819800	61	0.6742	SMALL-GAIN	FOCAL	7	"CYFIP2,FAM71B,FNDC9,HAVCR1,HAVCR2,ITK,MED7"
TCGA.CK.5914.01A	5	156514076	156887142	58	0.4158	SMALL-GAIN	FOCAL	7	"CYFIP2,FAM71B,FNDC9,HAVCR2,ITK,MED7,NIPAL4"
TCGA.AA.3844	5	156635046	157505114	317	0.5394	SMALL-GAIN	FOCAL	10	"ADAM19,C5orf52,CLINT1,CYFIP2,FNDC9,ITK,LSM11,NIPAL4,SOX30,THG1L"
TCGA.AA.3850	5	156636754	157233288	219	0.38495	SMALL-GAIN	FOCAL	10	"ADAM19,C5orf52,CLINT1,CYFIP2,FNDC9,ITK,LSM11,NIPAL4,SOX30,THG1L"
TCGA.AA.A00Q.01A	5	156712334	156899420	14	0.6082	SMALL-GAIN	FOCAL	3	"CYFIP2,FNDC9,NIPAL4"
TCGA.AG.3909.01A	5	156908747	156964892	18	0.4702	SMALL-GAIN	FOCAL	1	ADAM19
TCGA.CK.5914.01A	5	156918596	156964892	14	0.5469	SMALL-GAIN	FOCAL	1	ADAM19
TCGA.AG.3891.01A	5	157159859	157178348	6	0.4893	SMALL-GAIN	FOCAL	2	"LSM11,THG1L"
TCGA.AG.3909.01A	5	157214613	158266977	21	0.5425	SMALL-GAIN	FOCAL	2	"CLINT1,EBF1"
TCGA.BM.6198	5	157786008	158468105	260	0.38815	SMALL-GAIN	FOCAL	1	EBF1
TCGA.BM.6198	5	158529491	159686255	390	0.38245	SMALL-GAIN	FOCAL	8	"ADRA1B,CCNJL,FABP6,IL12B,PWWP2A,RNF145,TTC1,UBLCP1"
TCGA.AA.A00N.01A	5	158585666	158608916	8	0.4482	SMALL-GAIN	FOCAL	1	RNF145
TCGA.AA.3509.01A	5	158595852	158750041	21	0.5522	SMALL-GAIN	FOCAL	3	"IL12B,RNF145,UBLCP1"
TCGA.AA.3844	5	159317302	159975862	212	0.6002	SMALL-GAIN	FOCAL	9	"ADRA1B,C1QTNF2,CCNJL,FABP6,PTTG1,PWWP2A,SLU7,TTC1,ZBED8"
TCGA.AZ.4684.01A	5	159833426	162918048	96	0.4589	SMALL-GAIN	FOCAL	10	"ATP10B,CCNG1,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,NUDCD2,PTTG1,SLU7"
TCGA.AA.A00Q.01A	5	159992409	160114775	5	0.4247	SMALL-GAIN	FOCAL	1	ATP10B
TCGA.CK.5914.01A	5	161178402	161580072	20	0.4262	SMALL-GAIN	FOCAL	2	"GABRA1,GABRG2"
TCGA.DY.A1DC	5	165675992	165697826	11	0.5743	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00Q.01A	5	166711804	167689027	9	0.4422	SMALL-GAIN	FOCAL	1	TENM2
TCGA.CK.5914.01A	5	166711804	167913430	53	0.5824	SMALL-GAIN	FOCAL	2	"TENM2,WWC1"
TCGA.AA.3939.01A	5	167517569	167928959	54	0.4586	SMALL-GAIN	FOCAL	3	"RARS,TENM2,WWC1"
TCGA.AA.3844	5	167522264	167553879	23	0.6751	SMALL-GAIN	FOCAL	1	TENM2
TCGA.AA.3941	5	167522264	167557513	25	0.4006	SMALL-GAIN	FOCAL	1	TENM2
TCGA.AA.3844	5	167575627	167636981	30	0.5825	SMALL-GAIN	FOCAL	1	TENM2
TCGA.A6.3810.01A	5	168093458	168199744	24	0.5048	SMALL-GAIN	FOCAL	1	SLIT3
TCGA.AA.A01Q.01A	5	168110939	168180827	16	0.5234	SMALL-GAIN	FOCAL	1	SLIT3
TCGA.CK.5914.01A	5	168110939	168727465	34	0.6031	SMALL-GAIN	FOCAL	1	SLIT3
TCGA.AG.3909.01A	5	168139224	169108696	40	0.4807	SMALL-GAIN	FOCAL	3	"DOCK2,SLIT3,SPDL1"
TCGA.AA.A010.01A	5	169532922	169931521	28	0.5639	SMALL-GAIN	FOCAL	5	"C5orf58,FOXI1,KCNIP1,KCNMB1,LCP2"
TCGA.AA.A00N.01A	5	169689618	170648706	52	0.6694	SMALL-GAIN	FOCAL	5	"GABRP,KCNIP1,KCNMB1,LCP2,RANBP17"
TCGA.AG.3891.01A	5	170816993	170883511	14	0.4271	SMALL-GAIN	FOCAL	2	"FGF18,NPM1"
TCGA.AG.A01W.01A	5	172045733	172129739	5	0.6462	SMALL-GAIN	FOCAL	1	NEURL1B
TCGA.CK.5914.01A	5	172197579	172359402	12	0.5633	SMALL-GAIN	FOCAL	2	"DUSP1,ERGIC1"
TCGA.AA.A010.01A	5	174940446	175540736	26	0.5681	SMALL-GAIN	FOCAL	5	"CPLX2,FAM153B,HRH2,SFXN1,THOC3"
TCGA.5M.AAT5	5	175346627	175638368	29	0.5579	SMALL-GAIN	FOCAL	2	"FAM153B,THOC3"
TCGA.CK.5914.01A	5	175394963	175690448	16	0.3947	SMALL-GAIN	FOCAL	3	"FAM153B,SIMC1,THOC3"
TCGA.AG.A015.01A	5	175523778	175540736	10	0.425	SMALL-GAIN	FOCAL	1	FAM153B
TCGA.AM.5820	5	175601473	175638368	9	0.4494	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3891.01A	5	175837180	175992281	13	0.4047	SMALL-GAIN	FOCAL	4	"CDHR2,CLTB,FAF2,RNF44"
TCGA.AG.3909.01A	5	175843141	175958953	12	0.4769	SMALL-GAIN	FOCAL	3	"CLTB,FAF2,RNF44"
TCGA.AG.A01W.01A	5	175888578	175891592	6	0.6623	SMALL-GAIN	FOCAL	1	FAF2
TCGA.CK.5914.01A	5	175913319	175933722	8	0.6579	SMALL-GAIN	FOCAL	1	FAF2
TCGA.AM.5820	5	175949422	176106429	49	0.5052	SMALL-GAIN	FOCAL	6	"CDHR2,EIF4E1B,GPRIN1,RNF44,SNCB,TSPAN17"
TCGA.AG.3906.01A	5	176008325	176053654	14	0.5929	SMALL-GAIN	FOCAL	3	"CDHR2,GPRIN1,SNCB"
TCGA.AG.3909.01A	5	177035483	177175591	17	0.6483	SMALL-GAIN	FOCAL	2	"B4GALT7,FAM153A"
TCGA.CM.4744.01A	5	177155978	177175591	14	0.484	SMALL-GAIN	FOCAL	1	FAM153A
TCGA.CK.5914.01A	5	177155978	177473807	23	0.6342	SMALL-GAIN	FOCAL	2	"FAM153A,PROP1"
TCGA.AG.3906.01A	5	177546533	177642229	22	0.4235	SMALL-GAIN	FOCAL	5	"HNRNPAB,N4BP3,NHP2,PHYKPL,RMND5B"
TCGA.AM.5820	5	177660238	177863082	78	0.4535	SMALL-GAIN	FOCAL	1	COL23A1
TCGA.AM.5820	5	178539381	178805611	106	0.4585	SMALL-GAIN	FOCAL	1	ADAMTS2
TCGA.AG.3906.01A	5	178770796	179036328	18	0.4422	SMALL-GAIN	FOCAL	2	"ADAMTS2,RUFY1"
TCGA.AG.3891.01A	5	178770796	179155542	40	0.5647	SMALL-GAIN	FOCAL	6	"ADAMTS2,C5orf60,CANX,CBY3,HNRNPH1,RUFY1"
TCGA.AG.A00C.01A	5	179042470	179155542	23	0.5817	SMALL-GAIN	FOCAL	4	"C5orf60,CANX,CBY3,HNRNPH1"
TCGA.AG.A01W.01A	5	179088149	179160914	15	0.451	SMALL-GAIN	FOCAL	3	"CANX,CBY3,MAML1"
TCGA.AG.3906.01A	5	179132642	179228334	23	0.516	SMALL-GAIN	FOCAL	4	"CANX,LTC4S,MAML1,MGAT4B"
TCGA.AG.A01W.01A	5	179223034	179232450	9	0.5271	SMALL-GAIN	FOCAL	2	"LTC4S,MGAT4B"
TCGA.AG.3906.01A	5	179315074	179382571	6	0.4412	SMALL-GAIN	FOCAL	2	"RNF130,TBC1D9B"
TCGA.AA.A01Q.01A	5	179555390	179564539	3	0.6547	SMALL-GAIN	FOCAL	1	RASGEF1C
TCGA.AG.3906.01A	5	179691709	179731725	6	0.6452	SMALL-GAIN	FOCAL	2	"GFPT2,MAPK9"
TCGA.AA.A01Q.01A	5	180047572	180481148	33	0.473	SMALL-GAIN	FOCAL	7	"BTNL3,BTNL8,BTNL9,FLT4,MGAT1,OR2Y1,ZFP62"
TCGA.CM.5344	5	180274653	180692832	114	0.4038	SMALL-GAIN	FOCAL	10	"BTNL3,BTNL8,BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AZ.4684.01A	5	180374474	180424171	8	0.6601	SMALL-GAIN	FOCAL	2	"BTNL3,BTNL8"
TCGA.AA.A02H.01A	5	180430769	180432317	4	0.6318	SMALL-GAIN	FOCAL	1	BTNL3
TCGA.DC.6158	5	180527308	180603690	30	0.5336	SMALL-GAIN	FOCAL	2	"OR2V1,OR2V2"
TCGA.AA.3522	6	279694	378702	19	0.573	SMALL-GAIN	FOCAL	1	DUSP22
TCGA.AD.6901	6	279694	384520	22	0.5855	SMALL-GAIN	FOCAL	1	DUSP22
TCGA.AA.A010.01A	6	486616	656141	26	0.5445	SMALL-GAIN	FOCAL	2	"EXOC2,HUS1B"
TCGA.AG.3891.01A	6	1390663	1612029	4	0.6443	SMALL-GAIN	FOCAL	2	"FOXC1,FOXF2"
TCGA.CK.5914.01A	6	1624336	2685483	18	0.4744	SMALL-GAIN	FOCAL	2	"GMDS,MYLK4"
TCGA.AA.A010.01A	6	1624336	2692989	20	0.3804	SMALL-GAIN	FOCAL	2	"GMDS,MYLK4"
TCGA.AA.A00N.01A	6	1726631	2692989	18	0.5581	SMALL-GAIN	FOCAL	2	"GMDS,MYLK4"
TCGA.AG.A00C.01A	6	2833870	3226748	50	0.4333	SMALL-GAIN	FOCAL	8	"BPHL,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,TUBB2A,TUBB2B"
TCGA.AA.A00F.01A	6	2836052	3155818	43	0.6444	SMALL-GAIN	FOCAL	7	"BPHL,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,TUBB2A"
TCGA.AA.3862.01A	6	3850005	5000749	50	0.6324	SMALL-GAIN	FOCAL	7	"C6orf201,CDYL,ECI2,FAM217A,FAM50B,PRPF4B,RPP40"
TCGA.AG.3891.01A	6	4057220	4122146	13	0.4503	SMALL-GAIN	FOCAL	4	"C6orf201,ECI2,FAM217A,PRPF4B"
TCGA.AA.A00F.01A	6	4060640	4133746	14	0.6489	SMALL-GAIN	FOCAL	4	"C6orf201,ECI2,FAM217A,PRPF4B"
TCGA.AA.A00N.01A	6	4734939	4954093	7	0.4054	SMALL-GAIN	FOCAL	1	CDYL
TCGA.AG.3909.01A	6	5004073	5771475	10	0.5388	SMALL-GAIN	FOCAL	4	"FARS2,LYRM4,PPP1R3G,RPP40"
TCGA.CK.5914.01A	6	5004073	7189355	42	0.5611	SMALL-GAIN	FOCAL	8	"F13A1,FARS2,LY86,LYRM4,NRN1,PPP1R3G,RPP40,RREB1"
TCGA.AA.A00N.01A	6	5085719	7189355	41	0.4252	SMALL-GAIN	FOCAL	7	"F13A1,FARS2,LY86,LYRM4,NRN1,PPP1R3G,RREB1"
TCGA.AG.3909.01A	6	6145802	7211768	25	0.524	SMALL-GAIN	FOCAL	3	"F13A1,LY86,RREB1"
TCGA.AA.3979	6	6942563	6963066	23	0.5792	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	6	10775520	11778798	72	0.3816	SMALL-GAIN	FOCAL	9	"ADTRP,ELOVL2,ERVFRD-1,GCM2,MAK,NEDD9,SMIM13,SYCP2L,TMEM170B"
TCGA.AA.A010.01A	6	10784618	10830750	10	0.6764	SMALL-GAIN	FOCAL	1	MAK
TCGA.AG.A00C.01A	6	13306579	13625838	26	0.3971	SMALL-GAIN	FOCAL	5	"GFOD1,NOL7,RANBP9,SIRT5,TBC1D7"
TCGA.DM.A1HB	6	14162948	14278638	40	0.5914	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	6	14602828	15763792	411	0.3864	SMALL-GAIN	FOCAL	2	"DTNBP1,JARID2"
TCGA.CM.5341	6	17289544	19012920	613	0.5874	SMALL-GAIN	FOCAL	10	"CAP2,DEK,FAM8A1,KDM1B,KIF13A,NHLRC1,NUP153,RBM24,RNF144B,TPMT"
TCGA.AG.3909.01A	6	17291936	17556535	12	0.5513	SMALL-GAIN	FOCAL	2	"CAP2,RBM24"
TCGA.AA.A00N.01A	6	17291936	17600653	13	0.6518	SMALL-GAIN	FOCAL	3	"CAP2,FAM8A1,RBM24"
TCGA.AA.A01R	6	17346474	18174011	236	0.435	SMALL-GAIN	FOCAL	7	"CAP2,FAM8A1,KDM1B,KIF13A,NHLRC1,NUP153,TPMT"
TCGA.AA.A00N.01A	6	17624775	17898316	55	0.4346	SMALL-GAIN	FOCAL	2	"KIF13A,NUP153"
TCGA.CK.5914.01A	6	17706458	17898316	38	0.5927	SMALL-GAIN	FOCAL	2	"KIF13A,NUP153"
TCGA.AG.3909.01A	6	17760998	17987229	38	0.4891	SMALL-GAIN	FOCAL	1	KIF13A
TCGA.AG.A00C.01A	6	18134011	18160069	7	0.6468	SMALL-GAIN	FOCAL	2	"KDM1B,TPMT"
TCGA.AA.A00N.01A	6	18185926	18226378	17	0.5586	SMALL-GAIN	FOCAL	2	"DEK,KDM1B"
TCGA.AA.A010.01A	6	18185926	18236646	18	0.4088	SMALL-GAIN	FOCAL	2	"DEK,KDM1B"
TCGA.CK.5914.01A	6	18185926	18249830	20	0.447	SMALL-GAIN	FOCAL	2	"DEK,KDM1B"
TCGA.AG.A00C.01A	6	18236646	18258488	7	0.4544	SMALL-GAIN	FOCAL	1	DEK
TCGA.CK.5914.01A	6	18264024	21065232	41	0.4256	SMALL-GAIN	FOCAL	6	"CDKAL1,DEK,E2F3,ID4,MBOAT1,RNF144B"
TCGA.AA.A00N.01A	6	18399724	21594775	43	0.5139	SMALL-GAIN	FOCAL	6	"CDKAL1,E2F3,ID4,MBOAT1,RNF144B,SOX4"
TCGA.AA.A010.01A	6	20102480	21231032	34	0.6451	SMALL-GAIN	FOCAL	3	"CDKAL1,E2F3,MBOAT1"
TCGA.AA.A00F.01A	6	24353724	24433339	15	0.5931	SMALL-GAIN	FOCAL	4	"DCDC2,GPLD1,KAAG1,MRS2"
TCGA.AA.A00N.01A	6	24429212	24454221	9	0.5763	SMALL-GAIN	FOCAL	1	GPLD1
TCGA.AG.3909.01A	6	24528175	24601203	23	0.6417	SMALL-GAIN	FOCAL	2	"ALDH5A1,KIAA0319"
TCGA.AA.A010.01A	6	24528175	24850814	61	0.3987	SMALL-GAIN	FOCAL	8	"ACOT13,ALDH5A1,C6orf229,C6orf62,FAM65B,GMNN,KIAA0319,TDP2"
TCGA.AG.A00C.01A	6	24650969	24785839	20	0.3976	SMALL-GAIN	FOCAL	4	"ACOT13,C6orf62,GMNN,TDP2"
TCGA.AA.A010.01A	6	25799005	25983410	29	0.463	SMALL-GAIN	FOCAL	4	"SLC17A1,SLC17A2,SLC17A3,TRIM38"
TCGA.AA.A010.01A	6	26374478	26545386	45	0.6247	SMALL-GAIN	FOCAL	7	"BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HMGN4"
TCGA.AA.A010.01A	6	28119572	28297048	25	0.3828	SMALL-GAIN	FOCAL	7	"NKAPL,PGBD1,ZKSCAN4,ZKSCAN8,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AA.3850	6	28557311	29019231	83	0.39495	SMALL-GAIN	FOCAL	3	"OR2W1,TRIM27,ZNF311"
TCGA.AA.A01C.01A	6	29011983	29364425	12	0.3803	SMALL-GAIN	FOCAL	8	"OR12D2,OR12D3,OR14J1,OR2B3,OR2J2,OR2J3,OR2W1,OR5V1"
TCGA.AG.3909.01A	6	29054073	29454493	18	0.4879	SMALL-GAIN	FOCAL	10	"OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2J2,OR2J3,OR5V1"
TCGA.CK.5914.01A	6	29054073	29454493	18	0.6516	SMALL-GAIN	FOCAL	10	"OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2J2,OR2J3,OR5V1"
TCGA.AG.3891.01A	6	29635332	29643126	8	0.4185	SMALL-GAIN	FOCAL	2	"MOG,ZFP57"
TCGA.AG.3891.01A	6	30573683	30630367	32	0.5738	SMALL-GAIN	FOCAL	5	"ATAT1,C6orf136,DHX16,MRPS18B,PPP1R10"
TCGA.AG.A016.01A	6	30864356	30892079	30	0.4661	SMALL-GAIN	FOCAL	3	"DDR1,GTF2H4,VARS2"
TCGA.AG.A015.01A	6	30878886	30899211	23	0.5558	SMALL-GAIN	FOCAL	3	"GTF2H4,SFTA2,VARS2"
TCGA.AG.4009.01A	6	31088055	31122226	15	0.4624	SMALL-GAIN	FOCAL	4	"CCHCR1,CDSN,PSORS1C1,PSORS1C2"
TCGA.AA.A00N.01A	6	31097338	31116131	11	0.3992	SMALL-GAIN	FOCAL	3	"CCHCR1,PSORS1C1,PSORS1C2"
TCGA.AA.A00Q.01A	6	31371343	31465904	5	0.4274	SMALL-GAIN	FOCAL	2	"MICA,MICB"
TCGA.AG.A016.01A	6	31378323	31474812	11	0.4691	SMALL-GAIN	FOCAL	2	"MICA,MICB"
TCGA.AA.3982	6	31418699	31547419	74	0.4762	SMALL-GAIN	FOCAL	7	"ATP6V1G2,DDX39B,LTA,MCCD1,MICB,NFKBIL1,TNF"
TCGA.AG.A015.01A	6	31548489	31560406	10	0.599	SMALL-GAIN	FOCAL	3	"LST1,LTB,NCR3"
TCGA.AG.A016.01A	6	31549275	31560406	9	0.6753	SMALL-GAIN	FOCAL	3	"LST1,LTB,NCR3"
TCGA.AG.A01L.01A	6	31656740	31659317	5	0.4646	SMALL-GAIN	FOCAL	1	ABHD16A
TCGA.AA.A01F.01A	6	31742261	31765511	21	0.3978	SMALL-GAIN	FOCAL	3	"LSM2,VARS,VWA7"
TCGA.AG.A01L.01A	6	31742261	31766179	19	0.5137	SMALL-GAIN	FOCAL	3	"LSM2,VARS,VWA7"
TCGA.AG.A016.01A	6	31743713	31773784	19	0.6633	SMALL-GAIN	FOCAL	3	"LSM2,VARS,VWA7"
TCGA.AG.A00C.01A	6	31759969	31830343	19	0.4774	SMALL-GAIN	FOCAL	7	"C6orf48,HSPA1A,HSPA1B,HSPA1L,LSM2,NEU1,VARS"
TCGA.AG.A016.01A	6	31846649	31906975	23	0.5503	SMALL-GAIN	FOCAL	4	"C2,EHMT2,SLC44A4,ZBTB12"
TCGA.AG.A01L.01A	6	31854308	31905045	16	0.4972	SMALL-GAIN	FOCAL	3	"C2,EHMT2,ZBTB12"
TCGA.AF.3914.01A	6	31961970	32037912	36	0.4269	SMALL-GAIN	FOCAL	6	"C4A,C4B,C4B_2,CYP21A2,STK19,TNXB"
TCGA.AG.A00C.01A	6	32039746	32130302	35	0.4598	SMALL-GAIN	FOCAL	5	"ATF6B,FKBPL,PPT2,PRRT1,TNXB"
TCGA.AG.3906.01A	6	32046833	32147228	43	0.4606	SMALL-GAIN	FOCAL	8	"AGPAT1,ATF6B,EGFL8,FKBPL,PPT2,PRRT1,RNF5,TNXB"
TCGA.AG.4009.01A	6	32157434	32191573	30	0.3986	SMALL-GAIN	FOCAL	3	"GPSM3,NOTCH4,PBX2"
TCGA.AG.A02X.01A	6	32166694	32270305	23	0.5346	SMALL-GAIN	FOCAL	2	"C6orf10,NOTCH4"
TCGA.AG.3909.01A	6	32171507	32184715	10	0.4995	SMALL-GAIN	FOCAL	1	NOTCH4
TCGA.AG.3909.01A	6	32260751	32307299	15	0.471	SMALL-GAIN	FOCAL	1	C6orf10
TCGA.AA.A00N.01A	6	32267606	32317464	17	0.4428	SMALL-GAIN	FOCAL	1	C6orf10
TCGA.CK.5914.01A	6	32361689	32411481	11	0.418	SMALL-GAIN	FOCAL	2	"BTNL2,HLA-DRA"
TCGA.AG.A02X.01A	6	32363815	32411481	9	0.6173	SMALL-GAIN	FOCAL	2	"BTNL2,HLA-DRA"
TCGA.AG.3909.01A	6	32370665	32411481	7	0.6058	SMALL-GAIN	FOCAL	2	"BTNL2,HLA-DRA"
TCGA.AA.3509.01A	6	32547959	32629096	12	0.5571	SMALL-GAIN	FOCAL	3	"HLA-DQA1,HLA-DQB1,HLA-DRB1"
TCGA.CK.5914.01A	6	32605175	32797129	27	0.4023	SMALL-GAIN	FOCAL	6	"HLA-DOB,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,TAP2"
TCGA.AA.A00Q.01A	6	32629696	32781483	10	0.397	SMALL-GAIN	FOCAL	4	"HLA-DOB,HLA-DQA2,HLA-DQB1,HLA-DQB2"
TCGA.AA.A00N.01A	6	32780911	32805266	14	0.448	SMALL-GAIN	FOCAL	2	"HLA-DOB,TAP2"
TCGA.AG.3909.01A	6	32902671	32920678	10	0.4765	SMALL-GAIN	FOCAL	2	"HLA-DMA,HLA-DMB"
TCGA.AG.A00C.01A	6	32940604	32948312	11	0.3819	SMALL-GAIN	FOCAL	1	BRD2
TCGA.AG.3909.01A	6	32974805	32977181	4	0.6231	SMALL-GAIN	FOCAL	1	HLA-DOA
TCGA.AG.3891.01A	6	33408474	33623495	18	0.411	SMALL-GAIN	FOCAL	4	"BAK1,ITPR3,SYNGAP1,ZBTB9"
TCGA.AA.A00N.01A	6	33541528	33703043	63	0.3927	SMALL-GAIN	FOCAL	4	"BAK1,IP6K3,ITPR3,UQCC2"
TCGA.AA.A010.01A	6	33638065	33740366	41	0.4348	SMALL-GAIN	FOCAL	4	"IP6K3,ITPR3,LEMD2,UQCC2"
TCGA.AF.3914.01A	6	33646181	33747815	36	0.6477	SMALL-GAIN	FOCAL	4	"IP6K3,ITPR3,LEMD2,UQCC2"
TCGA.AA.A010.01A	6	34392802	34725225	18	0.62	SMALL-GAIN	FOCAL	6	"C6orf106,PACSIN1,RPS10,RPS10-NUDT3,SNRPC,SPDEF"
TCGA.AG.3909.01A	6	34558278	34840053	28	0.5636	SMALL-GAIN	FOCAL	3	"C6orf106,SNRPC,UHRF1BP1"
TCGA.AA.A01Q.01A	6	34558278	34985223	28	0.3791	SMALL-GAIN	FOCAL	5	"ANKS1A,C6orf106,SNRPC,TAF11,UHRF1BP1"
TCGA.CK.5914.01A	6	34725599	34840053	23	0.5426	SMALL-GAIN	FOCAL	2	"SNRPC,UHRF1BP1"
TCGA.AA.A010.01A	6	34857131	35056284	21	0.6396	SMALL-GAIN	FOCAL	1	ANKS1A
TCGA.AG.3909.01A	6	34934995	34985223	9	0.5211	SMALL-GAIN	FOCAL	1	ANKS1A
TCGA.AA.A02K.01A	6	35466058	35480346	10	0.4003	SMALL-GAIN	FOCAL	1	TULP1
TCGA.AA.A00N.01A	6	35478586	35705787	16	0.3899	SMALL-GAIN	FOCAL	3	"ARMC12,FKBP5,TULP1"
TCGA.CK.5914.01A	6	35479415	35716277	18	0.4613	SMALL-GAIN	FOCAL	3	"ARMC12,FKBP5,TULP1"
TCGA.AG.3909.01A	6	35543575	35610445	10	0.4661	SMALL-GAIN	FOCAL	1	FKBP5
TCGA.AA.A010.01A	6	35543575	36063727	70	0.392	SMALL-GAIN	FOCAL	9	"ARMC12,CLPS,CLPSL1,CLPSL2,FKBP5,LHFPL5,MAPK14,SLC26A8,SRPK1"
TCGA.AG.4009.01A	6	35755646	35782282	6	0.4071	SMALL-GAIN	FOCAL	3	"CLPS,CLPSL1,LHFPL5"
TCGA.AA.A00N.01A	6	35782282	35858624	17	0.4748	SMALL-GAIN	FOCAL	2	"LHFPL5,SRPK1"
TCGA.AG.3891.01A	6	35960239	35979973	4	0.3807	SMALL-GAIN	FOCAL	1	SLC26A8
TCGA.AG.A01W.01A	6	36095225	36208320	16	0.4133	SMALL-GAIN	FOCAL	2	"BRPF3,MAPK13"
TCGA.AG.4009.01A	6	36710006	36759744	13	0.4827	SMALL-GAIN	FOCAL	1	CPNE5
TCGA.AA.3982	6	38084568	38202821	44	0.5109	SMALL-GAIN	FOCAL	2	"BTBD9,ZFAND3"
TCGA.AA.3850	6	38111338	38201444	37	0.43285	SMALL-GAIN	FOCAL	2	"BTBD9,ZFAND3"
TCGA.AA.3850	6	38634742	38719849	32	0.55005	SMALL-GAIN	FOCAL	2	"DNAH8,GLO1"
TCGA.AG.A01N.01A	6	38690575	39073196	100	0.422	SMALL-GAIN	FOCAL	3	"DNAH8,GLP1R,SAYSD1"
TCGA.AG.3909.01A	6	38709437	38906527	70	0.5326	SMALL-GAIN	FOCAL	1	DNAH8
TCGA.AA.A00N.01A	6	38709437	38913192	71	0.6738	SMALL-GAIN	FOCAL	1	DNAH8
TCGA.CK.5914.01A	6	38729431	38913192	68	0.6454	SMALL-GAIN	FOCAL	1	DNAH8
TCGA.AA.3982	6	38953291	39331507	214	0.4746	SMALL-GAIN	FOCAL	7	"DNAH8,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,SAYSD1"
TCGA.AA.A01Q.01A	6	39048407	39082607	4	0.5744	SMALL-GAIN	FOCAL	2	"GLP1R,SAYSD1"
TCGA.AG.3909.01A	6	39311437	39692952	21	0.401	SMALL-GAIN	FOCAL	1	KIF6
TCGA.CK.5914.01A	6	39311437	39692952	23	0.5133	SMALL-GAIN	FOCAL	1	KIF6
TCGA.AA.3850	6	39745435	39893209	72	0.43135	SMALL-GAIN	FOCAL	2	"DAAM2,MOCS1"
TCGA.CK.5914.01A	6	39851687	41029040	36	0.5363	SMALL-GAIN	FOCAL	6	"APOBEC2,DAAM2,LRFN2,MOCS1,TSPO2,UNC5CL"
TCGA.AA.A01Q.01A	6	39874081	39895016	10	0.5586	SMALL-GAIN	FOCAL	1	MOCS1
TCGA.DY.A1DG	6	40344458	40761737	260	0.5364	SMALL-GAIN	FOCAL	1	LRFN2
TCGA.DY.A1DG	6	40848012	41183858	82	0.502	SMALL-GAIN	FOCAL	8	"APOBEC2,NFYA,OARD1,TREM2,TREML1,TREML2,TSPO2,UNC5CL"
TCGA.AA.A00F.01A	6	41035022	41065033	14	0.5956	SMALL-GAIN	FOCAL	2	"NFYA,OARD1"
TCGA.AA.A01Q.01A	6	41117341	41309529	27	0.6215	SMALL-GAIN	FOCAL	6	"NCR2,TREM1,TREM2,TREML1,TREML2,TREML4"
TCGA.AG.A01W.01A	6	41852593	41881315	13	0.5683	SMALL-GAIN	FOCAL	2	"MED20,USP49"
TCGA.CK.5914.01A	6	42025075	42210947	30	0.475	SMALL-GAIN	FOCAL	6	"C6orf132,GUCA1A,GUCA1B,MRPS10,TAF8,TRERF1"
TCGA.AA.A00N.01A	6	42109996	42203904	20	0.5959	SMALL-GAIN	FOCAL	5	"C6orf132,GUCA1A,GUCA1B,MRPS10,TRERF1"
TCGA.AG.4009.01A	6	42141323	42235850	27	0.4077	SMALL-GAIN	FOCAL	4	"GUCA1A,GUCA1B,MRPS10,TRERF1"
TCGA.AF.3914.01A	6	42141323	42532030	28	0.5753	SMALL-GAIN	FOCAL	5	"GUCA1A,GUCA1B,MRPS10,TRERF1,UBR2"
TCGA.AA.A00N.01A	6	42235850	42630949	30	0.4326	SMALL-GAIN	FOCAL	2	"TRERF1,UBR2"
TCGA.AA.A010.01A	6	42641496	42848547	28	0.4399	SMALL-GAIN	FOCAL	5	"GLTSCR1L,PRPH2,RPL7L1,TBCC,UBR2"
TCGA.AG.3891.01A	6	42789680	42853946	17	0.5709	SMALL-GAIN	FOCAL	2	"GLTSCR1L,RPL7L1"
TCGA.AH.6549.01A	6	42789680	42952328	43	0.6644	SMALL-GAIN	FOCAL	8	"C6orf226,CNPY3,GLTSCR1L,GNMT,PEX6,PPP2R5D,PTCRA,RPL7L1"
TCGA.AA.A00L.01A	6	42819793	42853946	14	0.4415	SMALL-GAIN	FOCAL	2	"GLTSCR1L,RPL7L1"
TCGA.AG.3891.01A	6	42905797	42996783	40	0.5639	SMALL-GAIN	FOCAL	7	"CNPY3,GNMT,KLHDC3,MEA1,PEX6,PPP2R5D,RRP36"
TCGA.AA.A01F.01A	6	42935066	42937389	4	0.6414	SMALL-GAIN	FOCAL	1	PEX6
TCGA.AA.3967.01A	6	42935980	42996783	29	0.4495	SMALL-GAIN	FOCAL	5	"KLHDC3,MEA1,PEX6,PPP2R5D,RRP36"
TCGA.AG.3906.01A	6	42942581	43042314	63	0.6049	SMALL-GAIN	FOCAL	8	"CUL7,KLC4,KLHDC3,MEA1,MRPL2,PEX6,PPP2R5D,RRP36"
TCGA.AF.3914.01A	6	43010548	43030624	22	0.4363	SMALL-GAIN	FOCAL	3	"CUL7,KLC4,MRPL2"
TCGA.AA.A010.01A	6	43096664	43112911	10	0.6776	SMALL-GAIN	FOCAL	1	PTK7
TCGA.AG.3909.01A	6	43096664	43112911	10	0.5952	SMALL-GAIN	FOCAL	1	PTK7
TCGA.AG.3906.01A	6	43114300	43166977	22	0.4819	SMALL-GAIN	FOCAL	3	"CUL9,PTK7,SRF"
TCGA.AG.3909.01A	6	43163758	43183869	18	0.5754	SMALL-GAIN	FOCAL	1	CUL9
TCGA.AG.A01W.01A	6	43249524	43254461	5	0.4394	SMALL-GAIN	FOCAL	1	TTBK1
TCGA.AG.3909.01A	6	43269899	43316042	14	0.5067	SMALL-GAIN	FOCAL	3	"CRIP3,SLC22A7,ZNF318"
TCGA.AG.A00C.01A	6	43411613	43604091	91	0.3863	SMALL-GAIN	FOCAL	10	"ABCC10,DLK2,GTPBP2,LRRC73,MAD2L1BP,POLH,POLR1C,TJAP1,XPO5,YIPF3"
TCGA.AF.3914.01A	6	44106138	44150876	32	0.4023	SMALL-GAIN	FOCAL	2	"CAPN11,TMEM63B"
TCGA.AG.A016.01A	6	44117579	44140906	13	0.5069	SMALL-GAIN	FOCAL	2	"CAPN11,TMEM63B"
TCGA.AA.A010.01A	6	44117948	44144928	19	0.5104	SMALL-GAIN	FOCAL	2	"CAPN11,TMEM63B"
TCGA.AG.A025.01A	6	44121396	44151382	19	0.5601	SMALL-GAIN	FOCAL	2	"CAPN11,TMEM63B"
TCGA.AA.A00Q.01A	6	44134434	44148149	6	0.5245	SMALL-GAIN	FOCAL	1	CAPN11
TCGA.AA.A00N.01A	6	44134434	44151382	17	0.5989	SMALL-GAIN	FOCAL	1	CAPN11
TCGA.AG.3909.01A	6	44137607	44151382	15	0.621	SMALL-GAIN	FOCAL	1	CAPN11
TCGA.AA.A00F.01A	6	44148149	44228133	25	0.6247	SMALL-GAIN	FOCAL	5	"CAPN11,HSP90AB1,NFKBIE,SLC29A1,SLC35B2"
TCGA.AG.A00C.01A	6	44194979	44201107	9	0.4442	SMALL-GAIN	FOCAL	1	SLC29A1
TCGA.AG.A016.01A	6	44197081	44270086	33	0.4986	SMALL-GAIN	FOCAL	7	"AARS2,HSP90AB1,NFKBIE,SLC29A1,SLC35B2,TCTE1,TMEM151B"
TCGA.AG.3891.01A	6	44198036	44249799	25	0.4073	SMALL-GAIN	FOCAL	6	"HSP90AB1,NFKBIE,SLC29A1,SLC35B2,TCTE1,TMEM151B"
TCGA.AA.A010.01A	6	44280816	44387134	18	0.6345	SMALL-GAIN	FOCAL	3	"AARS2,CDC5L,SPATS1"
TCGA.AG.A01W.01A	6	44328820	44336112	7	0.4707	SMALL-GAIN	FOCAL	1	SPATS1
TCGA.AG.3891.01A	6	44336106	44344689	4	0.663	SMALL-GAIN	FOCAL	1	SPATS1
TCGA.CK.5914.01A	6	44376130	46598650	56	0.6623	SMALL-GAIN	FOCAL	8	"CDC5L,CLIC5,CYP39A1,ENPP4,ENPP5,RCAN2,RUNX2,SUPT3H"
TCGA.AA.A010.01A	6	44797500	44929429	5	0.639	SMALL-GAIN	FOCAL	1	SUPT3H
TCGA.AA.A00F.01A	6	45332901	45405632	4	0.4318	SMALL-GAIN	FOCAL	2	"RUNX2,SUPT3H"
TCGA.AA.3979	6	45962470	46120102	62	0.6605	SMALL-GAIN	FOCAL	2	"CLIC5,ENPP4"
TCGA.AA.A00F.01A	6	45983151	46135164	8	0.4	SMALL-GAIN	FOCAL	3	"CLIC5,ENPP4,ENPP5"
TCGA.AA.A00F.01A	6	46555732	46761089	25	0.4222	SMALL-GAIN	FOCAL	5	"ANKRD66,CYP39A1,PLA2G7,SLC25A27,TDRD6"
TCGA.AA.A00N.01A	6	46761089	49409505	106	0.6569	SMALL-GAIN	FOCAL	10	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,CD2AP,MEP1A,MUT,OPN5,PTCHD4,TNFRSF21"
TCGA.AG.3909.01A	6	46766801	49416482	100	0.4111	SMALL-GAIN	FOCAL	10	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,CD2AP,MEP1A,MUT,OPN5,PTCHD4,TNFRSF21"
TCGA.AA.A00F.01A	6	46821672	46836629	9	0.4657	SMALL-GAIN	FOCAL	1	ADGRF5
TCGA.AA.3685	6	47173655	47631621	122	0.463	SMALL-GAIN	FOCAL	3	"ADGRF2,CD2AP,TNFRSF21"
TCGA.AA.A00F.01A	6	49437858	49459810	7	0.6325	SMALL-GAIN	FOCAL	1	CENPQ
TCGA.AA.A00A.01A	6	49437858	49604317	18	0.3869	SMALL-GAIN	FOCAL	4	"C6orf141,CENPQ,GLYATL3,RHAG"
TCGA.AA.A00N.01A	6	49479651	49494126	5	0.6206	SMALL-GAIN	FOCAL	1	GLYATL3
TCGA.AA.3685	6	49702375	49872325	39	0.3848	SMALL-GAIN	FOCAL	3	"CRISP1,CRISP3,PGK2"
TCGA.CK.4948.01B	6	49815876	49937221	7	0.5653	SMALL-GAIN	FOCAL	4	"CRISP1,DEFB113,DEFB114,DEFB133"
TCGA.AA.A00F.01A	6	50796265	50825001	6	0.4953	SMALL-GAIN	FOCAL	1	TFAP2B
TCGA.AA.A02H.01A	6	51483857	52053822	72	0.5435	SMALL-GAIN	FOCAL	2	"IL17A,PKHD1"
TCGA.AG.3909.01A	6	51483857	52129334	76	0.5618	SMALL-GAIN	FOCAL	4	"IL17A,IL17F,MCM3,PKHD1"
TCGA.AA.A01C.01A	6	51491758	52103486	73	0.4871	SMALL-GAIN	FOCAL	3	"IL17A,IL17F,PKHD1"
TCGA.AG.A016.01A	6	51920334	52051145	20	0.6258	SMALL-GAIN	FOCAL	1	PKHD1
TCGA.AA.A00N.01A	6	51924699	51949609	14	0.482	SMALL-GAIN	FOCAL	1	PKHD1
TCGA.AA.A010.01A	6	52109112	52381377	41	0.6376	SMALL-GAIN	FOCAL	5	"EFHC1,IL17F,MCM3,PAQR8,TRAM2"
TCGA.AA.A02K.01A	6	52129335	52149346	17	0.4604	SMALL-GAIN	FOCAL	1	MCM3
TCGA.AG.A00C.01A	6	52137991	52270075	12	0.428	SMALL-GAIN	FOCAL	2	"MCM3,PAQR8"
TCGA.F4.6854	6	52222163	52703765	165	0.4195	SMALL-GAIN	FOCAL	7	"EFHC1,GSTA1,GSTA2,GSTA5,PAQR8,TMEM14A,TRAM2"
TCGA.AG.3909.01A	6	52285144	52622601	31	0.4279	SMALL-GAIN	FOCAL	4	"EFHC1,GSTA2,TMEM14A,TRAM2"
TCGA.CK.5914.01A	6	52303085	52548819	23	0.4335	SMALL-GAIN	FOCAL	3	"EFHC1,TMEM14A,TRAM2"
TCGA.AG.3909.01A	6	52761556	52770493	6	0.4206	SMALL-GAIN	FOCAL	1	GSTA3
TCGA.CK.5914.01A	6	52869897	52905882	12	0.4861	SMALL-GAIN	FOCAL	1	ICK
TCGA.AG.3909.01A	6	52874185	52905882	10	0.4181	SMALL-GAIN	FOCAL	1	ICK
TCGA.AG.3909.01A	6	52957180	53387184	31	0.3811	SMALL-GAIN	FOCAL	4	"ELOVL5,FBXO9,GCLC,GCM1"
TCGA.CK.5914.01A	6	52957180	53767380	45	0.3954	SMALL-GAIN	FOCAL	6	"ELOVL5,FBXO9,GCLC,GCM1,KLHL31,LRRC1"
TCGA.AA.3666	6	53568395	56285292	927	0.437	SMALL-GAIN	FOCAL	9	"BMP5,COL21A1,FAM83B,GFRAL,HCRTR2,HMGCLL1,LRRC1,MLIP,TINAG"
TCGA.AA.3509.01A	6	53883802	56462488	136	0.5613	SMALL-GAIN	FOCAL	9	"BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,MLIP,TINAG"
TCGA.AA.A01C.01A	6	54013793	56473219	148	0.4174	SMALL-GAIN	FOCAL	9	"BMP5,COL21A1,DST,FAM83B,GFRAL,HCRTR2,HMGCLL1,MLIP,TINAG"
TCGA.D5.6898	6	54094800	54114065	8	0.6641	SMALL-GAIN	FOCAL	1	MLIP
TCGA.AA.A010.01A	6	55966209	56356976	33	0.4375	SMALL-GAIN	FOCAL	2	"COL21A1,DST"
TCGA.AA.3666	6	56308146	57537873	187	0.4542	SMALL-GAIN	FOCAL	7	"BAG2,BEND6,DST,KIAA1586,PRIM2,RAB23,ZNF451"
TCGA.CK.5914.01A	6	56392250	56399878	6	0.5402	SMALL-GAIN	FOCAL	1	DST
TCGA.AA.A02H.01A	6	56467956	56480285	7	0.63	SMALL-GAIN	FOCAL	1	DST
TCGA.AA.A010.01A	6	56479122	56489908	4	0.4153	SMALL-GAIN	FOCAL	1	DST
TCGA.AA.A00F.01A	6	56915546	56963802	4	0.5369	SMALL-GAIN	FOCAL	2	"KIAA1586,ZNF451"
TCGA.AA.A00F.01A	6	57046780	57512455	9	0.4741	SMALL-GAIN	FOCAL	3	"BAG2,PRIM2,RAB23"
TCGA.AG.3909.01A	6	57244656	62887053	17	0.38	SMALL-GAIN	FOCAL	3	"KHDRBS2,MTRNR2L9,PRIM2"
TCGA.A6.2678	6	58407539	58532969	22	0.577	SMALL-GAIN	FOCAL	0	None
TCGA.A6.2678	6	58774715	63086843	235	0.4899	SMALL-GAIN	FOCAL	2	"KHDRBS2,MTRNR2L9"
TCGA.DM.A28K	6	62242117	64032119	395	0.4861	SMALL-GAIN	FOCAL	3	"KHDRBS2,LGSN,MTRNR2L9"
TCGA.AA.3655	6	62411488	67267236	1156	0.43	SMALL-GAIN	FOCAL	6	"EYS,KHDRBS2,LGSN,LOC441155,PHF3,PTP4A1"
TCGA.AG.3575	6	62582851	64371148	355	0.4788	SMALL-GAIN	FOCAL	4	"KHDRBS2,LGSN,PHF3,PTP4A1"
TCGA.AG.3575	6	64386059	65090442	110	0.4522	SMALL-GAIN	FOCAL	2	"EYS,PHF3"
TCGA.F5.6811.01A	6	65824191	66150973	7	0.5242	SMALL-GAIN	FOCAL	2	"EYS,LOC441155"
TCGA.DM.A1D4	6	68475530	68508944	17	0.4865	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3584	6	68576551	68920299	105	0.4582	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3655	6	69271970	69387021	30	0.5597	SMALL-GAIN	FOCAL	1	ADGRB3
TCGA.AA.3655	6	69461440	69710716	88	0.6132	SMALL-GAIN	FOCAL	1	ADGRB3
TCGA.AA.3655	6	69781700	69873200	25	0.549	SMALL-GAIN	FOCAL	1	ADGRB3
TCGA.AZ.4684.01A	6	70451659	73839453	169	0.5608	SMALL-GAIN	FOCAL	10	"B3GAT2,COL19A1,COL9A1,FAM135A,KCNQ5,LMBRD1,OGFRL1,RIMS1,SDHAF4,SMAP1"
TCGA.CK.5914.01A	6	72943423	73787448	34	0.656	SMALL-GAIN	FOCAL	2	"KCNQ5,RIMS1"
TCGA.AA.3930.01A	6	73331878	74207409	66	0.4558	SMALL-GAIN	FOCAL	9	"DDX43,DPPA5,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP"
TCGA.AA.3850	6	73913779	74358643	91	0.58465	SMALL-GAIN	FOCAL	10	"DDX43,DPPA5,EEF1A1,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AA.A00N.01A	6	73933419	73952089	6	0.5755	SMALL-GAIN	FOCAL	2	"KHDC1,KHDC1L"
TCGA.AG.A00Y.01A	6	74107353	74468628	50	0.5248	SMALL-GAIN	FOCAL	6	"CD109,DDX43,EEF1A1,MB21D1,MTO1,SLC17A5"
TCGA.AG.A01W.01A	6	74264154	74286276	7	0.565	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3930.01A	6	74304772	74473250	20	0.43	SMALL-GAIN	FOCAL	2	"CD109,SLC17A5"
TCGA.AA.A010.01A	6	74363466	74502312	22	0.4944	SMALL-GAIN	FOCAL	2	"CD109,SLC17A5"
TCGA.AZ.4684.01A	6	74405884	76566786	140	0.5871	SMALL-GAIN	FOCAL	7	"CD109,COL12A1,COX7A2,FILIP1,MYO6,SENP6,TMEM30A"
TCGA.AA.3509.01A	6	74407076	76540086	131	0.4233	SMALL-GAIN	FOCAL	7	"CD109,COL12A1,COX7A2,FILIP1,MYO6,SENP6,TMEM30A"
TCGA.AA.A017.01A	6	75825451	75977310	53	0.5281	SMALL-GAIN	FOCAL	3	"COL12A1,COX7A2,TMEM30A"
TCGA.AA.A00N.01A	6	75950838	78172436	91	0.4477	SMALL-GAIN	FOCAL	7	"COX7A2,FILIP1,HTR1B,IMPG1,MYO6,SENP6,TMEM30A"
TCGA.AA.A02H.01A	6	75974930	76386772	22	0.6547	SMALL-GAIN	FOCAL	3	"FILIP1,SENP6,TMEM30A"
TCGA.AA.A02H.01A	6	76538199	76582890	17	0.6384	SMALL-GAIN	FOCAL	1	MYO6
TCGA.AA.3509.01A	6	76617275	79577262	25	0.481	SMALL-GAIN	FOCAL	5	"HTR1B,IMPG1,IRAK1BP1,MEI4,MYO6"
TCGA.AG.A01N.01A	6	76623740	76717111	11	0.5401	SMALL-GAIN	FOCAL	2	"IMPG1,MYO6"
TCGA.CK.5914.01A	6	76660249	80656845	75	0.6026	SMALL-GAIN	FOCAL	10	"C6orf7,ELOVL4,HMGN3,HTR1B,IMPG1,IRAK1BP1,LCA5,MEI4,PHIP,SH3BGRL2"
TCGA.AA.A02H.01A	6	76720811	79787098	47	0.6338	SMALL-GAIN	FOCAL	5	"HTR1B,IMPG1,IRAK1BP1,MEI4,PHIP"
TCGA.AA.3679	6	77461072	78962625	455	0.3953	SMALL-GAIN	FOCAL	2	"HTR1B,MEI4"
TCGA.AA.A00N.01A	6	79752512	80656845	26	0.5514	SMALL-GAIN	FOCAL	6	"C6orf7,ELOVL4,HMGN3,LCA5,PHIP,SH3BGRL2"
TCGA.AA.3930.01A	6	79787098	79924616	6	0.642	SMALL-GAIN	FOCAL	2	"HMGN3,PHIP"
TCGA.AG.A01W.01A	6	80000889	80440024	10	0.3939	SMALL-GAIN	FOCAL	2	"LCA5,SH3BGRL2"
TCGA.CK.5914.01A	6	80732014	80751776	12	0.593	SMALL-GAIN	FOCAL	1	TTK
TCGA.AA.A00N.01A	6	80732014	82936872	51	0.4246	SMALL-GAIN	FOCAL	4	"BCKDHB,FAM46A,IBTK,TTK"
TCGA.AA.A02H.01A	6	80877373	83835202	60	0.4398	SMALL-GAIN	FOCAL	6	"BCKDHB,DOPEY1,FAM46A,IBTK,TPBG,UBE3D"
TCGA.F4.6854	6	82974088	83120727	26	0.4218	SMALL-GAIN	FOCAL	1	TPBG
TCGA.AA.A00N.01A	6	83602650	83733651	5	0.5874	SMALL-GAIN	FOCAL	1	UBE3D
TCGA.CK.5914.01A	6	83602650	83748080	6	0.6163	SMALL-GAIN	FOCAL	1	UBE3D
TCGA.CK.5914.01A	6	83775300	83830355	9	0.6687	SMALL-GAIN	FOCAL	2	"DOPEY1,UBE3D"
TCGA.AG.A01N.01A	6	83834376	83881607	31	0.5503	SMALL-GAIN	FOCAL	2	"DOPEY1,PGM3"
TCGA.CK.5914.01A	6	83845311	83884043	25	0.5807	SMALL-GAIN	FOCAL	2	"DOPEY1,PGM3"
TCGA.AA.A02H.01A	6	83846884	84055844	44	0.5584	SMALL-GAIN	FOCAL	4	"DOPEY1,ME1,PGM3,RWDD2A"
TCGA.CK.5914.01A	6	83921656	84375116	39	0.5076	SMALL-GAIN	FOCAL	3	"ME1,PRSS35,SNAP91"
TCGA.DM.A28K	6	84237226	84269316	5	0.4906	SMALL-GAIN	FOCAL	1	SNAP91
TCGA.DM.A28K	6	84356241	84874839	117	0.5812	SMALL-GAIN	FOCAL	5	"CEP162,CYB5R4,MRAP2,RIPPLY2,SNAP91"
TCGA.CK.5914.01A	6	84603194	84884896	32	0.5638	SMALL-GAIN	FOCAL	3	"CEP162,CYB5R4,MRAP2"
TCGA.AA.A02K.01A	6	84894879	84910456	5	0.4161	SMALL-GAIN	FOCAL	1	CEP162
TCGA.CK.5914.01A	6	84910467	86246463	39	0.4458	SMALL-GAIN	FOCAL	4	"CEP162,NT5E,SNX14,TBX18"
TCGA.AA.A00N.01A	6	85473556	86267637	31	0.5727	SMALL-GAIN	FOCAL	3	"NT5E,SNX14,TBX18"
TCGA.AG.3909.01A	6	86159871	86259401	29	0.4063	SMALL-GAIN	FOCAL	2	"NT5E,SNX14"
TCGA.CK.5914.01A	6	88210187	88299556	25	0.4252	SMALL-GAIN	FOCAL	2	"RARS2,SLC35A1"
TCGA.AA.A00N.01A	6	88210187	88757623	50	0.4116	SMALL-GAIN	FOCAL	5	"AKIRIN2,ORC3,RARS2,SLC35A1,SPACA1"
TCGA.AA.A00N.01A	6	88775878	89616035	16	0.5823	SMALL-GAIN	FOCAL	3	"CNR1,RNGTT,SPACA1"
TCGA.DM.A1D4	6	88846447	88866375	13	0.6582	SMALL-GAIN	FOCAL	1	CNR1
TCGA.AG.A00C.01A	6	89601508	89868017	15	0.3905	SMALL-GAIN	FOCAL	4	"PM20D2,PNRC1,RNGTT,SRSF12"
TCGA.AG.3909.01A	6	89871454	90575682	156	0.3955	SMALL-GAIN	FOCAL	9	"ANKRD6,CASP8AP2,GABRR1,GABRR2,LYRM2,MDN1,PM20D2,RRAGD,UBE2J1"
TCGA.CK.5914.01A	6	89888471	90333553	44	0.5546	SMALL-GAIN	FOCAL	5	"ANKRD6,GABRR1,GABRR2,RRAGD,UBE2J1"
TCGA.CK.5914.01A	6	90371102	90396570	20	0.4049	SMALL-GAIN	FOCAL	1	MDN1
TCGA.AA.A010.01A	6	90449926	91228154	48	0.6386	SMALL-GAIN	FOCAL	5	"BACH2,CASP8AP2,GJA10,MAP3K7,MDN1"
TCGA.AG.A01W.01A	6	90516768	90525210	7	0.5287	SMALL-GAIN	FOCAL	1	MDN1
TCGA.AG.3909.01A	6	90642145	91245991	10	0.5081	SMALL-GAIN	FOCAL	2	"BACH2,MAP3K7"
TCGA.AG.3883	6	91106978	91114210	6	0.5772	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3531	6	96611968	96658637	20	0.4384	SMALL-GAIN	FOCAL	1	FUT9
TCGA.F5.6811.01A	6	97088838	97107071	11	0.4633	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00F.01A	6	97338953	97345505	3	0.6205	SMALL-GAIN	FOCAL	1	NDUFAF4
TCGA.AA.A00F.01A	6	99930581	99957950	7	0.5657	SMALL-GAIN	FOCAL	1	USP45
TCGA.AG.A00C.01A	6	99951592	99957950	4	0.5588	SMALL-GAIN	FOCAL	1	USP45
TCGA.AA.A01I.01A	6	100060857	105192345	78	0.5336	SMALL-GAIN	FOCAL	6	"ASCC3,GRIK2,HACE1,MCHR2,PRDM13,SIM1"
TCGA.AG.A01W.01A	6	101017865	102609859	56	0.4448	SMALL-GAIN	FOCAL	2	"ASCC3,GRIK2"
TCGA.CK.5914.01A	6	105614372	105823961	14	0.4138	SMALL-GAIN	FOCAL	2	"POPDC3,PREP"
TCGA.AA.A00N.01A	6	105725969	105821207	12	0.6303	SMALL-GAIN	FOCAL	1	PREP
TCGA.DM.A1HB	6	106328642	106469890	52	0.5705	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	6	106552651	106649810	6	0.658	SMALL-GAIN	FOCAL	2	"ATG5,PRDM1"
TCGA.AG.3591	6	106568033	107510009	368	0.4689	SMALL-GAIN	FOCAL	7	"AIM1,ATG5,BEND3,C6orf203,PDSS2,QRSL1,RTN4IP1"
TCGA.CK.5914.01A	6	106634373	106756202	6	0.6644	SMALL-GAIN	FOCAL	1	ATG5
TCGA.CK.5914.01A	6	106987228	107050687	19	0.6692	SMALL-GAIN	FOCAL	2	"AIM1,RTN4IP1"
TCGA.AG.3883	6	107255348	107466629	63	0.5216	SMALL-GAIN	FOCAL	2	"BEND3,C6orf203"
TCGA.AG.3891.01A	6	107360936	107533276	11	0.3874	SMALL-GAIN	FOCAL	3	"BEND3,C6orf203,PDSS2"
TCGA.AA.A00N.01A	6	109466383	109675999	14	0.6543	SMALL-GAIN	FOCAL	2	"CEP57L1,LOC100996634"
TCGA.CK.5914.01A	6	109467944	109690023	15	0.626	SMALL-GAIN	FOCAL	3	"CD164,CEP57L1,LOC100996634"
TCGA.AG.A00C.01A	6	109787004	109854402	15	0.4501	SMALL-GAIN	FOCAL	3	"AK9,MICAL1,ZBTB24"
TCGA.AA.A00N.01A	6	109827482	110947932	103	0.3947	SMALL-GAIN	FOCAL	9	"AK9,CDC40,CDK19,DDO,FIG4,GPR6,METTL24,SLC22A16,WASF1"
TCGA.CK.5914.01A	6	109835379	110942266	98	0.4596	SMALL-GAIN	FOCAL	9	"AK9,CDC40,CDK19,DDO,FIG4,GPR6,METTL24,SLC22A16,WASF1"
TCGA.AA.3930.01A	6	110567187	110714017	6	0.5563	SMALL-GAIN	FOCAL	2	"DDO,METTL24"
TCGA.AG.3909.01A	6	110734444	110935686	11	0.3981	SMALL-GAIN	FOCAL	3	"CDK19,DDO,SLC22A16"
TCGA.AG.3891.01A	6	111280315	111346627	14	0.4334	SMALL-GAIN	FOCAL	2	"GTF3C6,RPF2"
TCGA.AG.3591	6	111378329	112629553	377	0.4406	SMALL-GAIN	FOCAL	9	"FAM229B,FYN,KIAA1919,LAMA4,REV3L,SLC16A10,TRAF3IP2,TUBE1,WISP3"
TCGA.AA.A00N.01A	6	111408939	111580841	8	0.5743	SMALL-GAIN	FOCAL	2	"KIAA1919,SLC16A10"
TCGA.AG.3909.01A	6	111408939	111580841	8	0.4869	SMALL-GAIN	FOCAL	2	"KIAA1919,SLC16A10"
TCGA.AG.A01W.01A	6	111515598	111605099	3	0.4632	SMALL-GAIN	FOCAL	2	"KIAA1919,SLC16A10"
TCGA.CK.5914.01A	6	111634518	112397477	62	0.6003	SMALL-GAIN	FOCAL	5	"FYN,REV3L,TRAF3IP2,TUBE1,WISP3"
TCGA.AG.3909.01A	6	111880557	112381149	22	0.606	SMALL-GAIN	FOCAL	3	"FYN,TRAF3IP2,WISP3"
TCGA.AG.3909.01A	6	112430588	112575000	41	0.4964	SMALL-GAIN	FOCAL	1	LAMA4
TCGA.AG.3591	6	114963770	115053997	27	0.516	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3591	6	116145941	116311700	54	0.4718	SMALL-GAIN	FOCAL	1	FRK
TCGA.AG.3909.01A	6	118475560	118886654	19	0.4796	SMALL-GAIN	FOCAL	3	"CEP85L,PLN,SLC35F1"
TCGA.AG.A00C.01A	6	119324637	119390164	8	0.6025	SMALL-GAIN	FOCAL	1	FAM184A
TCGA.AG.3909.01A	6	119399259	119628009	12	0.4913	SMALL-GAIN	FOCAL	2	"FAM184A,MAN1A1"
TCGA.AA.3861.01A	6	121576419	123101418	42	0.6573	SMALL-GAIN	FOCAL	6	"FABP7,GJA1,HSF2,PKIB,SERINC1,TBC1D32"
TCGA.AA.A00F.01A	6	123046255	123332082	14	0.4094	SMALL-GAIN	FOCAL	4	"CLVS2,FABP7,PKIB,SMPDL3A"
TCGA.AA.A00N.01A	6	123369728	125597245	65	0.5169	SMALL-GAIN	FOCAL	6	"CLVS2,HDDC2,NKAIN2,RNF217,TPD52L1,TRDN"
TCGA.D5.6932	6	125233517	125336798	39	0.6674	SMALL-GAIN	FOCAL	1	RNF217
TCGA.AG.A00C.01A	6	125613920	126075595	5	0.4576	SMALL-GAIN	FOCAL	2	"HDDC2,HEY2"
TCGA.AA.A00N.01A	6	126136427	126805721	37	0.572	SMALL-GAIN	FOCAL	4	"CENPW,HINT3,NCOA7,TRMT11"
TCGA.CK.5914.01A	6	126136427	127774941	59	0.4972	SMALL-GAIN	FOCAL	9	"CENPW,ECHDC1,HINT3,KIAA0408,NCOA7,RNF146,RSPO3,SOGA3,TRMT11"
TCGA.CK.4948.01B	6	128312388	128388643	14	0.3967	SMALL-GAIN	FOCAL	1	PTPRK
TCGA.F5.6814	6	128769899	129040562	83	0.4583	SMALL-GAIN	FOCAL	1	PTPRK
TCGA.F4.6854	6	129173745	131179085	764	0.3965	SMALL-GAIN	FOCAL	8	"ARHGAP18,EPB41L2,L3MBTL3,LAMA2,SAMD3,SMLR1,TMEM200A,TMEM244"
TCGA.AG.3594	6	130217784	131081251	314	0.4512	SMALL-GAIN	FOCAL	3	"L3MBTL3,SAMD3,TMEM200A"
TCGA.AG.A01W.01A	6	130431128	130448930	5	0.3866	SMALL-GAIN	FOCAL	1	L3MBTL3
TCGA.AA.3842	6	131183518	132635374	456	0.4181	SMALL-GAIN	FOCAL	10	"AKAP7,ARG1,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,MED23,MOXD1,OR2A4"
TCGA.AG.A01W.01A	6	131240887	131271575	10	0.4461	SMALL-GAIN	FOCAL	1	EPB41L2
TCGA.AA.3861.01A	6	131904158	131942984	27	0.6692	SMALL-GAIN	FOCAL	2	"ARG1,MED23"
TCGA.AG.A01W.01A	6	132230820	132823540	28	0.3927	SMALL-GAIN	FOCAL	3	"CTGF,MOXD1,STX7"
TCGA.AG.3891.01A	6	133091355	133100355	7	0.4004	SMALL-GAIN	FOCAL	1	SLC18B1
TCGA.AY.6196	6	133135412	133727248	212	0.4148	SMALL-GAIN	FOCAL	2	"EYA4,RPS12"
TCGA.AG.A00C.01A	6	134491366	134498752	10	0.5958	SMALL-GAIN	FOCAL	1	SGK1
TCGA.AA.A00N.01A	6	134528430	135375707	31	0.6185	SMALL-GAIN	FOCAL	3	"ALDH8A1,HBS1L,SGK1"
TCGA.AA.3854	6	134789040	135595559	275	0.4409	SMALL-GAIN	FOCAL	3	"ALDH8A1,HBS1L,MYB"
TCGA.AA.A01Q.01A	6	135239505	135271017	7	0.6134	SMALL-GAIN	FOCAL	1	ALDH8A1
TCGA.G4.6626	6	135352647	135482565	38	0.6604	SMALL-GAIN	FOCAL	1	HBS1L
TCGA.AZ.4614	6	135415207	135493877	30	0.6083	SMALL-GAIN	FOCAL	0	None
TCGA.CK.4948.01B	6	135715864	135750980	6	0.5831	SMALL-GAIN	FOCAL	1	AHI1
TCGA.CK.4948.01B	6	136582161	136600879	10	0.5273	SMALL-GAIN	FOCAL	1	BCLAF1
TCGA.AG.A01W.01A	6	137582019	138533467	14	0.4535	SMALL-GAIN	FOCAL	4	"ARFGEF3,OLIG3,PERP,TNFAIP3"
TCGA.AG.3909.01A	6	138413138	138599579	16	0.553	SMALL-GAIN	FOCAL	3	"ARFGEF3,PBOV1,PERP"
TCGA.AG.3909.01A	6	138632497	138657400	10	0.4101	SMALL-GAIN	FOCAL	1	ARFGEF3
TCGA.AA.A010.01A	6	138726242	139262424	53	0.5128	SMALL-GAIN	FOCAL	6	"CCDC28A,ECT2L,HEBP2,LOC100507462,NHSL1,REPS1"
TCGA.AA.A010.01A	6	139563624	142714014	29	0.4961	SMALL-GAIN	FOCAL	5	"ADGRG6,CITED2,NMBR,TXLNB,VTA1"
TCGA.AA.3509.01A	6	142525063	143825020	66	0.5047	SMALL-GAIN	FOCAL	7	"ADAT2,ADGRG6,AIG1,FUCA2,HIVEP2,PEX3,VTA1"
TCGA.AA.A010.01A	6	143457932	143800186	22	0.4334	SMALL-GAIN	FOCAL	3	"ADAT2,AIG1,PEX3"
TCGA.AA.A017.01A	6	143800186	144033124	11	0.5295	SMALL-GAIN	FOCAL	3	"FUCA2,PEX3,PHACTR2"
TCGA.AG.3909.01A	6	143832501	144416326	28	0.3787	SMALL-GAIN	FOCAL	6	"FUCA2,LTV1,PHACTR2,PLAGL1,SF3B5,ZC2HC1B"
TCGA.AA.A010.01A	6	143832501	144768318	56	0.4473	SMALL-GAIN	FOCAL	8	"FUCA2,LTV1,PHACTR2,PLAGL1,SF3B5,STX11,UTRN,ZC2HC1B"
TCGA.AA.A00L.01A	6	144165576	144224164	9	0.4203	SMALL-GAIN	FOCAL	2	"LTV1,ZC2HC1B"
TCGA.AG.3591	6	144434870	144495115	24	0.4509	SMALL-GAIN	FOCAL	1	STX11
TCGA.AA.A00F.01A	6	144507718	144837925	39	0.4948	SMALL-GAIN	FOCAL	2	"STX11,UTRN"
TCGA.AG.A00C.01A	6	144508524	144820341	33	0.4397	SMALL-GAIN	FOCAL	2	"STX11,UTRN"
TCGA.AA.A00D.01A	6	144508524	144837925	39	0.4321	SMALL-GAIN	FOCAL	2	"STX11,UTRN"
TCGA.AA.A017.01A	6	144832032	145069373	21	0.654	SMALL-GAIN	FOCAL	1	UTRN
TCGA.AG.3909.01A	6	144852136	146007218	38	0.4337	SMALL-GAIN	FOCAL	2	"EPM2A,UTRN"
TCGA.A6.3808.01A	6	144860381	145120499	23	0.5191	SMALL-GAIN	FOCAL	1	UTRN
TCGA.AA.A01C.01A	6	144878263	146707999	68	0.4959	SMALL-GAIN	FOCAL	5	"EPM2A,FBXO30,GRM1,SHPRH,UTRN"
TCGA.AA.3509.01A	6	145124120	147885461	127	0.6097	SMALL-GAIN	FOCAL	9	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SAMD5,SHPRH,STXBP5,UTRN"
TCGA.AA.A01Q.01A	6	145156889	145948571	7	0.5015	SMALL-GAIN	FOCAL	2	"EPM2A,UTRN"
TCGA.AA.A00N.01A	6	146185407	146719897	35	0.524	SMALL-GAIN	FOCAL	2	"GRM1,SHPRH"
TCGA.AA.A017.01A	6	146243772	146266467	11	0.5359	SMALL-GAIN	FOCAL	1	SHPRH
TCGA.CK.5914.01A	6	146261802	146920117	23	0.4192	SMALL-GAIN	FOCAL	3	"GRM1,RAB32,SHPRH"
TCGA.CK.5914.01A	6	147047171	147109483	16	0.5184	SMALL-GAIN	FOCAL	1	ADGB
TCGA.DM.A28K	6	147171337	147671993	137	0.5337	SMALL-GAIN	FOCAL	1	STXBP5
TCGA.CK.5914.01A	6	147556337	148761257	31	0.5871	SMALL-GAIN	FOCAL	3	"SAMD5,SASH1,STXBP5"
TCGA.AA.A00N.01A	6	147556337	149730701	64	0.4829	SMALL-GAIN	FOCAL	6	"SAMD5,SASH1,STXBP5,SUMO4,TAB2,UST"
TCGA.AA.A00D.01A	6	150022974	150123339	16	0.4008	SMALL-GAIN	FOCAL	3	"LATS1,NUP43,PCMT1"
TCGA.AA.A010.01A	6	150238006	151152281	44	0.502	SMALL-GAIN	FOCAL	8	"IYD,PLEKHG1,PPP1R14C,RAET1G,RAET1L,ULBP1,ULBP2,ULBP3"
TCGA.AG.3909.01A	6	150390082	151152281	24	0.4933	SMALL-GAIN	FOCAL	4	"IYD,PLEKHG1,PPP1R14C,ULBP3"
TCGA.AG.3909.01A	6	151226738	151362853	21	0.545	SMALL-GAIN	FOCAL	1	MTHFD1L
TCGA.AA.A00N.01A	6	151226738	151646912	25	0.5769	SMALL-GAIN	FOCAL	2	"AKAP12,MTHFD1L"
TCGA.AA.A00F.01A	6	151646912	151789461	21	0.467	SMALL-GAIN	FOCAL	4	"AKAP12,ARMT1,RMND1,ZBTB2"
TCGA.CK.5914.01A	6	151857425	152443531	20	0.6486	SMALL-GAIN	FOCAL	3	"CCDC170,ESR1,SYNE1"
TCGA.AG.3909.01A	6	151857425	152605066	71	0.4999	SMALL-GAIN	FOCAL	3	"CCDC170,ESR1,SYNE1"
TCGA.AG.3594	6	152012738	154491136	954	0.3975	SMALL-GAIN	FOCAL	9	"ESR1,FBXO5,IPCEF1,MTRF1L,MYCT1,OPRM1,RGS17,SYNE1,VIP"
TCGA.CK.5914.01A	6	152536002	152560616	15	0.417	SMALL-GAIN	FOCAL	1	SYNE1
TCGA.AA.A00F.01A	6	152629584	152642816	9	0.3851	SMALL-GAIN	FOCAL	1	SYNE1
TCGA.CK.5914.01A	6	152690566	152749292	24	0.622	SMALL-GAIN	FOCAL	1	SYNE1
TCGA.AA.3509.01A	6	152737540	154428553	66	0.5127	SMALL-GAIN	FOCAL	7	"FBXO5,MTRF1L,MYCT1,OPRM1,RGS17,SYNE1,VIP"
TCGA.AZ.4684.01A	6	152737540	154428553	66	0.6756	SMALL-GAIN	FOCAL	7	"FBXO5,MTRF1L,MYCT1,OPRM1,RGS17,SYNE1,VIP"
TCGA.CK.5914.01A	6	152771763	153078157	33	0.6448	SMALL-GAIN	FOCAL	3	"MYCT1,SYNE1,VIP"
TCGA.AA.A00F.01A	6	153076353	153347553	16	0.4095	SMALL-GAIN	FOCAL	4	"FBXO5,MTRF1L,RGS17,VIP"
TCGA.AG.A00C.01A	6	153292256	153319626	10	0.5242	SMALL-GAIN	FOCAL	2	"FBXO5,MTRF1L"
TCGA.CK.5914.01A	6	153345370	155504354	70	0.4825	SMALL-GAIN	FOCAL	6	"CNKSR3,IPCEF1,OPRM1,RGS17,SCAF8,TIAM2"
TCGA.AA.3930.01A	6	154520840	154762403	19	0.5158	SMALL-GAIN	FOCAL	3	"CNKSR3,IPCEF1,OPRM1"
TCGA.AA.A00F.01A	6	155565101	155581356	13	0.5318	SMALL-GAIN	FOCAL	2	"TFB1M,TIAM2"
TCGA.AG.A00C.01A	6	155565101	155581356	13	0.3962	SMALL-GAIN	FOCAL	2	"TFB1M,TIAM2"
TCGA.AG.3909.01A	6	155596812	158013756	47	0.396	SMALL-GAIN	FOCAL	6	"ARID1B,CLDN20,NOX3,TFB1M,TMEM242,ZDHHC14"
TCGA.CK.5914.01A	6	155717918	158902099	117	0.4406	SMALL-GAIN	FOCAL	9	"ARID1B,GTF2H5,NOX3,SERAC1,SNX9,SYNJ2,TMEM242,TULP4,ZDHHC14"
TCGA.NH.A8F7	6	157129577	157232766	43	0.4091	SMALL-GAIN	FOCAL	1	ARID1B
TCGA.AA.3982	6	157933058	158212790	122	0.5555	SMALL-GAIN	FOCAL	1	ZDHHC14
TCGA.AA.A00F.01A	6	158569845	158735037	7	0.4609	SMALL-GAIN	FOCAL	3	"GTF2H5,SERAC1,TULP4"
TCGA.AA.A00F.01A	6	158910568	159166503	17	0.4613	SMALL-GAIN	FOCAL	4	"DYNLT1,SYTL3,TMEM181,TULP4"
TCGA.AG.A015.01A	6	158910568	159192236	44	0.5741	SMALL-GAIN	FOCAL	5	"DYNLT1,EZR,SYTL3,TMEM181,TULP4"
TCGA.AA.A010.01A	6	159028229	159464950	61	0.627	SMALL-GAIN	FOCAL	7	"C6orf99,DYNLT1,EZR,RSPH3,SYTL3,TAGAP,TMEM181"
TCGA.AA.3870	6	159299215	159538416	72	0.4744	SMALL-GAIN	FOCAL	3	"C6orf99,RSPH3,TAGAP"
TCGA.AA.A00F.01A	6	159652864	160239570	51	0.6009	SMALL-GAIN	FOCAL	7	"ACAT2,FNDC1,MRPL18,PNLDC1,SOD2,TCP1,WTAP"
TCGA.AG.A00C.01A	6	160105839	160232677	42	0.6009	SMALL-GAIN	FOCAL	6	"ACAT2,MRPL18,PNLDC1,SOD2,TCP1,WTAP"
TCGA.AA.A00Q.01A	6	160159953	160176023	6	0.6195	SMALL-GAIN	FOCAL	1	WTAP
TCGA.AG.3909.01A	6	160445552	160494196	29	0.3843	SMALL-GAIN	FOCAL	1	IGF2R
TCGA.CK.5914.01A	6	160448170	160489229	24	0.4217	SMALL-GAIN	FOCAL	1	IGF2R
TCGA.AA.A00N.01A	6	160448170	160494196	28	0.4346	SMALL-GAIN	FOCAL	1	IGF2R
TCGA.AA.A02E.01A	6	160553215	161537796	102	0.6566	SMALL-GAIN	FOCAL	6	"LPA,MAP3K4,PLG,SLC22A1,SLC22A2,SLC22A3"
TCGA.AA.A01C.01A	6	160554941	161510324	85	0.4213	SMALL-GAIN	FOCAL	6	"LPA,MAP3K4,PLG,SLC22A1,SLC22A2,SLC22A3"
TCGA.CK.5914.01A	6	160557527	160962079	36	0.6311	SMALL-GAIN	FOCAL	4	"LPA,SLC22A1,SLC22A2,SLC22A3"
TCGA.AG.A01N.01A	6	160576970	161514748	83	0.5245	SMALL-GAIN	FOCAL	6	"LPA,MAP3K4,PLG,SLC22A1,SLC22A2,SLC22A3"
TCGA.AA.A00Q.01A	6	160931929	161021902	17	0.6424	SMALL-GAIN	FOCAL	1	LPA
TCGA.AA.A00N.01A	6	160968784	161537796	63	0.5614	SMALL-GAIN	FOCAL	3	"LPA,MAP3K4,PLG"
TCGA.CK.5914.01A	6	161173107	161494458	8	0.5651	SMALL-GAIN	FOCAL	2	"MAP3K4,PLG"
TCGA.AA.A00N.01A	6	161653037	165722967	38	0.5843	SMALL-GAIN	FOCAL	5	"AGPAT4,C6orf118,PACRG,PARK2,QKI"
TCGA.CK.5914.01A	6	161969834	165711424	28	0.5906	SMALL-GAIN	FOCAL	4	"C6orf118,PACRG,PARK2,QKI"
TCGA.AZ.6598	6	162038637	162066420	21	0.4543	SMALL-GAIN	FOCAL	1	PARK2
TCGA.EI.6883	6	162672820	162702831	10	0.6434	SMALL-GAIN	FOCAL	1	PARK2
TCGA.DC.4745	6	163040040	163057268	7	0.4546	SMALL-GAIN	FOCAL	1	PARK2
TCGA.DM.A1HB	6	163718868	163739361	27	0.6231	SMALL-GAIN	FOCAL	1	PACRG
TCGA.F4.6854	6	164105983	164176802	36	0.3899	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	6	164284561	164300469	14	0.47205	SMALL-GAIN	FOCAL	0	None
TCGA.F4.6854	6	164531358	164640171	47	0.4184	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01C.01A	6	165756833	165848678	14	0.4707	SMALL-GAIN	FOCAL	1	PDE10A
TCGA.AA.A00D.01A	6	166733623	166743606	7	0.6279	SMALL-GAIN	FOCAL	1	SFT2D1
TCGA.AA.A00D.01A	6	167347515	167447315	18	0.4673	SMALL-GAIN	FOCAL	2	"FGFR1OP,RNASET2"
TCGA.AA.A00N.01A	6	167786605	168344569	34	0.5048	SMALL-GAIN	FOCAL	2	"MLLT4,TCP10"
TCGA.AG.3909.01A	6	167789405	168323489	24	0.4064	SMALL-GAIN	FOCAL	2	"MLLT4,TCP10"
TCGA.AG.A00C.01A	6	168355114	168445476	12	0.5089	SMALL-GAIN	FOCAL	3	"HGC6.3,KIF25,MLLT4"
TCGA.AG.3906.01A	6	168430220	168445476	7	0.5917	SMALL-GAIN	FOCAL	1	KIF25
TCGA.AA.A02K.01A	6	168475884	169650753	39	0.3842	SMALL-GAIN	FOCAL	4	"DACT2,FRMD1,SMOC2,THBS2"
TCGA.AA.A01F.01A	6	169620256	169632709	10	0.5224	SMALL-GAIN	FOCAL	1	THBS2
TCGA.AA.A01Q.01A	6	169632026	170102584	12	0.4594	SMALL-GAIN	FOCAL	3	"C6orf120,THBS2,WDR27"
TCGA.AA.3980.01A	6	169634811	169639644	4	0.6506	SMALL-GAIN	FOCAL	1	THBS2
TCGA.AG.A00C.01A	6	170059494	170626442	45	0.4222	SMALL-GAIN	FOCAL	7	"C6orf120,DLL1,ERMARD,FAM120B,PHF10,TCTE3,WDR27"
TCGA.AA.A010.01A	6	170173360	170181409	6	0.4238	SMALL-GAIN	FOCAL	1	ERMARD
TCGA.AG.A00C.01A	6	170887905	170892551	4	0.527	SMALL-GAIN	FOCAL	1	PDCD2
TCGA.AG.3902	7	44407	50943	5	0.5382	SMALL-GAIN	FOCAL	0	None
TCGA.CA.6715	7	44407	64200	11	0.567	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3819	7	44407	71275	14	0.6113	SMALL-GAIN	FOCAL	0	None
TCGA.AM.5820	7	44407	155065	56	0.6264	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3966	7	44407	862804	90	0.4201	SMALL-GAIN	FOCAL	6	"DNAAF5,FAM20C,PDGFA,PRKAR1B,SUN1,WI2-2373I1.2"
TCGA.AM.5820	7	1169618	1260635	22	0.6247	SMALL-GAIN	FOCAL	2	"C7orf50,ZFAND2A"
TCGA.AA.A01Q.01A	7	1474171	1498781	12	0.5538	SMALL-GAIN	FOCAL	1	MICALL2
TCGA.AG.4009.01A	7	1594885	2262163	18	0.5832	SMALL-GAIN	FOCAL	4	"ELFN1,MAD1L1,PSMG3,TMEM184A"
TCGA.AG.3891.01A	7	2414105	2418272	4	0.3913	SMALL-GAIN	FOCAL	1	EIF3B
TCGA.AA.A00L.01A	7	2472227	2962725	45	0.5681	SMALL-GAIN	FOCAL	9	"AMZ1,BRAT1,CARD11,CHST12,GNA12,GRIFIN,IQCE,LFNG,TTYH3"
TCGA.AG.3906.01A	7	2552216	2611786	11	0.5407	SMALL-GAIN	FOCAL	3	"BRAT1,IQCE,LFNG"
TCGA.AM.5820	7	2590382	2640820	16	0.5162	SMALL-GAIN	FOCAL	2	"BRAT1,IQCE"
TCGA.AG.3891.01A	7	2612990	2640985	11	0.4851	SMALL-GAIN	FOCAL	1	IQCE
TCGA.AG.3906.01A	7	2644466	2649630	3	0.5109	SMALL-GAIN	FOCAL	1	IQCE
TCGA.AA.A010.01A	7	2740059	2834520	10	0.6407	SMALL-GAIN	FOCAL	2	"AMZ1,GNA12"
TCGA.AM.5820	7	2790684	4156500	624	0.4468	SMALL-GAIN	FOCAL	3	"CARD11,GNA12,SDK1"
TCGA.AA.A010.01A	7	2946235	4815266	85	0.4832	SMALL-GAIN	FOCAL	4	"AP5Z1,CARD11,FOXK1,SDK1"
TCGA.AA.A00N.01A	7	3179799	3861033	9	0.6619	SMALL-GAIN	FOCAL	1	SDK1
TCGA.AG.3727	7	3182100	3208070	19	0.5555	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	7	3355212	3976694	268	0.573	SMALL-GAIN	FOCAL	1	SDK1
TCGA.AA.3844	7	3980562	4388620	200	0.6091	SMALL-GAIN	FOCAL	1	SDK1
TCGA.AA.A00N.01A	7	4050550	4198043	17	0.5364	SMALL-GAIN	FOCAL	1	SDK1
TCGA.AM.5820	7	4882327	5261559	73	0.4639	SMALL-GAIN	FOCAL	6	"MMD2,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,WIPI2"
TCGA.AG.4009.01A	7	5642837	6088360	79	0.6512	SMALL-GAIN	FOCAL	10	"AIMP2,ANKRD61,CCZ1,EIF2AK1,FSCN1,OCM,PMS2,RNF216,RSPH10B,RSPH10B2"
TCGA.AG.3906.01A	7	6204515	6452381	18	0.4012	SMALL-GAIN	FOCAL	4	"CYTH3,DAGLB,FAM220A,RAC1"
TCGA.AG.4009.01A	7	6210119	6620143	31	0.4896	SMALL-GAIN	FOCAL	7	"CYTH3,DAGLB,FAM220A,GRID2IP,KDELR2,RAC1,ZDHHC4"
TCGA.AG.3906.01A	7	6470061	6634014	18	0.434	SMALL-GAIN	FOCAL	5	"C7orf26,DAGLB,GRID2IP,KDELR2,ZDHHC4"
TCGA.AA.A00L.01A	7	6523547	6660761	14	0.4988	SMALL-GAIN	FOCAL	5	"C7orf26,GRID2IP,KDELR2,ZDHHC4,ZNF853"
TCGA.AG.3909.01A	7	6803519	8275461	93	0.5931	SMALL-GAIN	FOCAL	10	"C1GALT1,CCZ1B,COL28A1,GLCCI1,ICA1,MIOS,RPA3,RSPH10B,RSPH10B2,UMAD1"
TCGA.AG.A01W.01A	7	6830558	7366499	6	0.6149	SMALL-GAIN	FOCAL	4	"C1GALT1,CCZ1B,RSPH10B,RSPH10B2"
TCGA.AA.3941	7	6942658	7171375	69	0.4115	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	7	7179207	7198072	13	0.4448	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A014.01A	7	7273910	7420212	9	0.6096	SMALL-GAIN	FOCAL	2	"C1GALT1,COL28A1"
TCGA.AA.A017.01A	7	7273910	10973230	71	0.5001	SMALL-GAIN	FOCAL	9	"C1GALT1,COL28A1,GLCCI1,ICA1,MIOS,NDUFA4,NXPH1,RPA3,UMAD1"
TCGA.AA.A00N.01A	7	7545581	8790621	50	0.5051	SMALL-GAIN	FOCAL	7	"COL28A1,GLCCI1,ICA1,MIOS,NXPH1,RPA3,UMAD1"
TCGA.AG.A014.01A	7	8178390	11062448	21	0.6753	SMALL-GAIN	FOCAL	4	"ICA1,NDUFA4,NXPH1,PHF14"
TCGA.DY.A1DC	7	8268506	8575467	167	0.4407	SMALL-GAIN	FOCAL	2	"ICA1,NXPH1"
TCGA.AA.3941	7	8274963	8364215	28	0.5768	SMALL-GAIN	FOCAL	1	ICA1
TCGA.DY.A1DC	7	8596900	8823953	98	0.4611	SMALL-GAIN	FOCAL	1	NXPH1
TCGA.DY.A1DC	7	8839570	8933083	42	0.4352	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	8947943	9868670	408	0.4123	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	9882396	11728733	757	0.402	SMALL-GAIN	FOCAL	3	"NDUFA4,PHF14,THSD7A"
TCGA.CK.5914.01A	7	11053357	14712507	124	0.4376	SMALL-GAIN	FOCAL	8	"ARL4A,DGKB,ETV1,PHF14,SCIN,THSD7A,TMEM106B,VWDE"
TCGA.AG.3909.01A	7	11062448	11082263	8	0.4156	SMALL-GAIN	FOCAL	1	PHF14
TCGA.AA.A00N.01A	7	12269264	15405730	94	0.5805	SMALL-GAIN	FOCAL	7	"AGMO,ARL4A,DGKB,ETV1,SCIN,TMEM106B,VWDE"
TCGA.AG.3909.01A	7	12409180	16505108	81	0.6049	SMALL-GAIN	FOCAL	9	"AGMO,ARL4A,DGKB,ETV1,ISPD,MEOX2,SCIN,SOSTDC1,VWDE"
TCGA.AZ.6606	7	12444489	13674144	456	0.4323	SMALL-GAIN	FOCAL	2	"ARL4A,SCIN"
TCGA.AA.A00N.01A	7	15458139	16596926	22	0.5668	SMALL-GAIN	FOCAL	5	"AGMO,ISPD,LRRC72,MEOX2,SOSTDC1"
TCGA.AA.3941	7	16302973	16925517	312	0.4667	SMALL-GAIN	FOCAL	8	"AGR2,AGR3,ANKMY2,BZW2,ISPD,LRRC72,SOSTDC1,TSPAN13"
TCGA.AA.3967.01A	7	16505108	17836425	54	0.4719	SMALL-GAIN	FOCAL	9	"AGR2,AGR3,AHR,ANKMY2,BZW2,LRRC72,SNX13,SOSTDC1,TSPAN13"
TCGA.AG.A00C.01A	7	16815819	16841261	11	0.5699	SMALL-GAIN	FOCAL	2	"AGR2,TSPAN13"
TCGA.AG.A01N.01A	7	16823020	17936910	47	0.4567	SMALL-GAIN	FOCAL	5	"AGR2,AGR3,AHR,SNX13,TSPAN13"
TCGA.AA.A010.01A	7	16899164	17843005	24	0.6435	SMALL-GAIN	FOCAL	3	"AGR3,AHR,SNX13"
TCGA.CK.5914.01A	7	16913342	17367328	7	0.508	SMALL-GAIN	FOCAL	2	"AGR3,AHR"
TCGA.AA.3941	7	16956378	17050642	45	0.391	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	17089942	18926582	700	0.4701	SMALL-GAIN	FOCAL	4	"AHR,HDAC9,PRPS1L1,SNX13"
TCGA.AG.3909.01A	7	17362093	18668956	42	0.6105	SMALL-GAIN	FOCAL	4	"AHR,HDAC9,PRPS1L1,SNX13"
TCGA.AA.3811	7	17588071	17814201	125	0.3854	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	7	17588071	17814201	126	0.5113	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	7	17931112	18668956	12	0.5919	SMALL-GAIN	FOCAL	3	"HDAC9,PRPS1L1,SNX13"
TCGA.AA.3941	7	18085784	18159168	13	0.6673	SMALL-GAIN	FOCAL	1	HDAC9
TCGA.AA.3941	7	18171411	18244501	30	0.4234	SMALL-GAIN	FOCAL	1	HDAC9
TCGA.AG.A01N.01A	7	18875486	20739671	50	0.4004	SMALL-GAIN	FOCAL	8	"ABCB5,FERD3L,HDAC9,ITGB8,MACC1,TMEM196,TWIST1,TWISTNB"
TCGA.AG.3909.01A	7	19748369	20795010	48	0.6731	SMALL-GAIN	FOCAL	5	"ABCB5,ITGB8,MACC1,TMEM196,TWISTNB"
TCGA.AA.A010.01A	7	20418624	20666108	12	0.6438	SMALL-GAIN	FOCAL	2	"ABCB5,ITGB8"
TCGA.AA.A00L.01A	7	20444212	20698077	6	0.5937	SMALL-GAIN	FOCAL	2	"ABCB5,ITGB8"
TCGA.AA.A00N.01A	7	20737978	20795010	12	0.4385	SMALL-GAIN	FOCAL	1	ABCB5
TCGA.AA.A00L.01A	7	21467777	22532893	33	0.6236	SMALL-GAIN	FOCAL	5	"CDCA7L,DNAH11,RAPGEF5,SP4,STEAP1B"
TCGA.AG.A01N.01A	7	21510624	22259437	109	0.6099	SMALL-GAIN	FOCAL	4	"CDCA7L,DNAH11,RAPGEF5,SP4"
TCGA.CK.5914.01A	7	21598368	21630786	12	0.5745	SMALL-GAIN	FOCAL	1	DNAH11
TCGA.AA.A01C.01A	7	21609650	21908433	66	0.6417	SMALL-GAIN	FOCAL	1	DNAH11
TCGA.CK.5914.01A	7	21655778	21757376	23	0.6393	SMALL-GAIN	FOCAL	1	DNAH11
TCGA.DM.A1D9	7	22696271	23501093	271	0.5349	SMALL-GAIN	FOCAL	8	"FAM126A,GPNMB,IGF2BP3,IL6,KLHL7,MALSU1,NUPL2,TOMM7"
TCGA.AG.3909.01A	7	22766815	23191656	26	0.62	SMALL-GAIN	FOCAL	4	"FAM126A,IL6,KLHL7,TOMM7"
TCGA.AA.A00N.01A	7	22862249	23183432	20	0.6395	SMALL-GAIN	FOCAL	3	"FAM126A,KLHL7,TOMM7"
TCGA.AA.A010.01A	7	23145598	23458318	50	0.6679	SMALL-GAIN	FOCAL	5	"GPNMB,IGF2BP3,KLHL7,MALSU1,NUPL2"
TCGA.AA.A00N.01A	7	23775135	25267873	78	0.5718	SMALL-GAIN	FOCAL	8	"C7orf31,CYCS,DFNA5,MPP6,NPVF,NPY,OSBPL3,STK31"
TCGA.CK.5914.01A	7	23776471	25267873	77	0.3901	SMALL-GAIN	FOCAL	8	"C7orf31,CYCS,DFNA5,MPP6,NPVF,NPY,OSBPL3,STK31"
TCGA.AA.A00D.01A	7	25182222	26411474	32	0.4799	SMALL-GAIN	FOCAL	6	"C7orf31,CBX3,HNRNPA2B1,NFE2L3,NPVF,SNX10"
TCGA.AG.3909.01A	7	25200742	25989495	7	0.4014	SMALL-GAIN	FOCAL	2	"C7orf31,NPVF"
TCGA.AG.A00C.01A	7	25200742	26412065	29	0.4689	SMALL-GAIN	FOCAL	6	"C7orf31,CBX3,HNRNPA2B1,NFE2L3,NPVF,SNX10"
TCGA.AG.3906.01A	7	25989495	26251725	17	0.6412	SMALL-GAIN	FOCAL	3	"CBX3,HNRNPA2B1,NFE2L3"
TCGA.CK.5914.01A	7	27565814	30008485	96	0.512	SMALL-GAIN	FOCAL	10	"CHN2,CPVL,CREB5,HIBADH,JAZF1,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3"
TCGA.AA.A00F.01A	7	28031520	28452464	4	0.6739	SMALL-GAIN	FOCAL	2	"CREB5,JAZF1"
TCGA.AA.3930.01A	7	29394224	29552139	14	0.6368	SMALL-GAIN	FOCAL	1	CHN2
TCGA.AA.3844	7	29427619	30279417	334	0.477	SMALL-GAIN	FOCAL	7	"CHN2,FKBP14,MTURN,PLEKHA8,PRR15,SCRN1,WIPF3"
TCGA.AG.A00C.01A	7	30008485	30088811	9	0.5862	SMALL-GAIN	FOCAL	3	"FKBP14,PLEKHA8,SCRN1"
TCGA.AA.A00D.01A	7	30008485	30185496	20	0.4186	SMALL-GAIN	FOCAL	4	"FKBP14,MTURN,PLEKHA8,SCRN1"
TCGA.AA.3950	7	30031683	30586219	143	0.6598	SMALL-GAIN	FOCAL	6	"FKBP14,GGCT,MTURN,NOD1,PLEKHA8,ZNRF2"
TCGA.CK.5914.01A	7	30084664	30465194	25	0.48	SMALL-GAIN	FOCAL	4	"MTURN,NOD1,PLEKHA8,ZNRF2"
TCGA.AG.3909.01A	7	30084664	30468935	22	0.5979	SMALL-GAIN	FOCAL	4	"MTURN,NOD1,PLEKHA8,ZNRF2"
TCGA.AA.A010.01A	7	30395293	31014519	87	0.6195	SMALL-GAIN	FOCAL	9	"AQP1,CRHR2,FAM188B,GARS,GGCT,GHRHR,INMT,NOD1,ZNRF2"
TCGA.AG.A00C.01A	7	30536656	30655465	12	0.4394	SMALL-GAIN	FOCAL	2	"GARS,GGCT"
TCGA.AA.A02K.01A	7	30538373	30649163	10	0.6511	SMALL-GAIN	FOCAL	2	"GARS,GGCT"
TCGA.AA.A00N.01A	7	30671840	30795138	19	0.5572	SMALL-GAIN	FOCAL	3	"CRHR2,GARS,INMT"
TCGA.AA.3930.01A	7	30728757	30892945	18	0.4059	SMALL-GAIN	FOCAL	3	"CRHR2,FAM188B,INMT"
TCGA.AA.A010.01A	7	32249029	32623367	23	0.6128	SMALL-GAIN	FOCAL	3	"AVL9,LSM5,PDE1C"
TCGA.AA.3930.01A	7	32908950	33136046	25	0.3927	SMALL-GAIN	FOCAL	4	"FKBP9,KBTBD2,NT5C3A,RP9"
TCGA.AG.3902	7	33124004	33192165	18	0.506	SMALL-GAIN	FOCAL	2	"BBS9,RP9"
TCGA.AA.3844	7	34374996	37641717	1211	0.4081	SMALL-GAIN	FOCAL	10	"ANLN,AOAH,DPY19L1,EEPD1,ELMO1,HERPUD2,KIAA0895,NPSR1,SEPT7,TBX20"
TCGA.AG.4009.01A	7	35673248	36278562	21	0.4535	SMALL-GAIN	FOCAL	3	"EEPD1,HERPUD2,SEPT7"
TCGA.AA.A00N.01A	7	35673248	36374628	31	0.4768	SMALL-GAIN	FOCAL	4	"EEPD1,HERPUD2,KIAA0895,SEPT7"
TCGA.AA.A00D.01A	7	35712752	36465535	27	0.5235	SMALL-GAIN	FOCAL	5	"ANLN,EEPD1,HERPUD2,KIAA0895,SEPT7"
TCGA.AG.4009.01A	7	36447296	36561592	21	0.574	SMALL-GAIN	FOCAL	2	"ANLN,AOAH"
TCGA.AA.A00N.01A	7	36458805	36698719	31	0.3987	SMALL-GAIN	FOCAL	2	"ANLN,AOAH"
TCGA.AA.A010.01A	7	36466478	36713485	23	0.4824	SMALL-GAIN	FOCAL	2	"ANLN,AOAH"
TCGA.AA.A00N.01A	7	36901206	37927832	35	0.5579	SMALL-GAIN	FOCAL	3	"ELMO1,GPR141,NME8"
TCGA.EI.6513	7	37293534	37446692	73	0.3925	SMALL-GAIN	FOCAL	1	ELMO1
TCGA.AG.4009.01A	7	37298739	37382159	5	0.4411	SMALL-GAIN	FOCAL	1	ELMO1
TCGA.AG.3902	7	37625474	37641717	7	0.6558	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00D.01A	7	37927832	37953751	7	0.4083	SMALL-GAIN	FOCAL	2	"NME8,SFRP4"
TCGA.AA.3989	7	38290713	38366511	37	0.5106	SMALL-GAIN	FOCAL	1	TARP
TCGA.AG.3883	7	38290713	38366511	37	0.6218	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3848	7	38290713	38386790	43	0.4982	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3860	7	38303119	38357322	30	0.6689	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3673	7	38303119	38384840	41	0.6565	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3675	7	38303119	38386790	42	0.52	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3831	7	38303119	38386790	42	0.4734	SMALL-GAIN	FOCAL	1	TARP
TCGA.AG.3727	7	38303119	38386790	42	0.5694	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3856	7	38303119	38404970	45	0.6111	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3977	7	38311097	38326882	11	0.5584	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3556	7	38311097	38386790	41	0.5359	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3854	7	38311097	38386790	41	0.5821	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3973	7	38311097	38386790	41	0.5817	SMALL-GAIN	FOCAL	1	TARP
TCGA.AA.3692	7	38331503	38366511	20	0.5485	SMALL-GAIN	FOCAL	0	None
TCGA.A6.3807	7	38357074	38362071	7	0.4119	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3901	7	38358226	38366511	6	0.6758	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3664	7	38408478	41608297	1031	0.6522	SMALL-GAIN	FOCAL	8	"AMPH,CDK13,MPLKIP,POU6F2,RALA,SUGCT,VPS41,YAE1D1"
TCGA.AA.3955	7	38408478	41896859	1141	0.6618	SMALL-GAIN	FOCAL	9	"AMPH,CDK13,INHBA,MPLKIP,POU6F2,RALA,SUGCT,VPS41,YAE1D1"
TCGA.AA.3955	7	41908174	42367605	192	0.6142	SMALL-GAIN	FOCAL	1	GLI3
TCGA.AA.A00N.01A	7	42971649	43846524	52	0.3814	SMALL-GAIN	FOCAL	6	"BLVRA,COA1,HECW1,MRPL32,PSMA2,STK17A"
TCGA.CK.5914.01A	7	43503222	44084292	52	0.5495	SMALL-GAIN	FOCAL	10	"BLVRA,COA1,DBNL,HECW1,MRPS24,SPDYE1,STK17A,UBE2D4,URGCP,URGCP-MRPS24"
TCGA.AG.A01W.01A	7	44062832	44527820	89	0.5077	SMALL-GAIN	FOCAL	10	"AEBP1,CAMK2B,DBNL,GCK,MYL7,NUDCD3,PGAM2,POLD2,POLM,YKT6"
TCGA.CK.5914.01A	7	44185098	44240683	11	0.6527	SMALL-GAIN	FOCAL	2	"GCK,YKT6"
TCGA.AA.A01Q.01A	7	44259634	44268948	3	0.4443	SMALL-GAIN	FOCAL	1	CAMK2B
TCGA.AG.3909.01A	7	44605539	44663909	13	0.4194	SMALL-GAIN	FOCAL	3	"DDX56,OGDH,TMED4"
TCGA.AG.3891.01A	7	44608458	44619031	8	0.3981	SMALL-GAIN	FOCAL	2	"DDX56,TMED4"
TCGA.AG.A00C.01A	7	44609355	44663909	10	0.3981	SMALL-GAIN	FOCAL	3	"DDX56,OGDH,TMED4"
TCGA.AG.3891.01A	7	44746777	44923987	26	0.3978	SMALL-GAIN	FOCAL	5	"H2AFV,OGDH,PPIA,PURB,ZMIZ2"
TCGA.AG.3909.01A	7	45015043	45742923	41	0.6228	SMALL-GAIN	FOCAL	6	"ADCY1,CCM2,MYO1G,NACAD,RAMP3,TBRG4"
TCGA.AG.A01W.01A	7	45114935	47289803	30	0.4651	SMALL-GAIN	FOCAL	7	"ADCY1,CCM2,IGFBP1,IGFBP3,NACAD,RAMP3,TBRG4"
TCGA.AG.4009.01A	7	45115349	45216876	11	0.3791	SMALL-GAIN	FOCAL	4	"CCM2,NACAD,RAMP3,TBRG4"
TCGA.AA.A00N.01A	7	45216876	45753301	20	0.6365	SMALL-GAIN	FOCAL	2	"ADCY1,RAMP3"
TCGA.AG.A00C.01A	7	45930108	45956775	6	0.5067	SMALL-GAIN	FOCAL	2	"IGFBP1,IGFBP3"
TCGA.AF.6136	7	46430799	48254416	735	0.6685	SMALL-GAIN	FOCAL	9	"ABCA13,C7orf57,C7orf65,C7orf69,HUS1,PKD1L1,SUN3,TNS3,UPP1"
TCGA.AA.3982	7	47119984	47163755	29	0.5252	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	7	47128359	47163755	28	0.6703	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	7	47186411	48152370	364	0.4862	SMALL-GAIN	FOCAL	8	"C7orf57,C7orf65,C7orf69,HUS1,PKD1L1,SUN3,TNS3,UPP1"
TCGA.AA.3844	7	47186411	48198035	372	0.6336	SMALL-GAIN	FOCAL	8	"C7orf57,C7orf65,C7orf69,HUS1,PKD1L1,SUN3,TNS3,UPP1"
TCGA.AA.3811	7	47219975	48152370	355	0.5394	SMALL-GAIN	FOCAL	8	"C7orf57,C7orf65,C7orf69,HUS1,PKD1L1,SUN3,TNS3,UPP1"
TCGA.AA.A00N.01A	7	47317637	47943925	73	0.6362	SMALL-GAIN	FOCAL	4	"C7orf65,C7orf69,PKD1L1,TNS3"
TCGA.G4.6294	7	47339891	47399397	20	0.4994	SMALL-GAIN	FOCAL	1	TNS3
TCGA.CK.5914.01A	7	47440330	47943925	58	0.4952	SMALL-GAIN	FOCAL	4	"C7orf65,C7orf69,PKD1L1,TNS3"
TCGA.G4.6294	7	47503865	48199098	246	0.4198	SMALL-GAIN	FOCAL	8	"C7orf57,C7orf65,C7orf69,HUS1,PKD1L1,SUN3,TNS3,UPP1"
TCGA.AG.4009.01A	7	47937536	47947637	6	0.528	SMALL-GAIN	FOCAL	1	PKD1L1
TCGA.AA.A00F.01A	7	47937536	48146422	36	0.6572	SMALL-GAIN	FOCAL	5	"C7orf57,HUS1,PKD1L1,SUN3,UPP1"
TCGA.AZ.4684.01A	7	48320923	49977085	48	0.3799	SMALL-GAIN	FOCAL	3	"ABCA13,VWC2,ZPBP"
TCGA.AA.3509.01A	7	48563802	50173666	22	0.5236	SMALL-GAIN	FOCAL	4	"ABCA13,C7orf72,VWC2,ZPBP"
TCGA.AA.3941	7	50135199	50160188	15	0.6514	SMALL-GAIN	FOCAL	1	C7orf72
TCGA.AA.3811	7	50147258	51922012	727	0.4587	SMALL-GAIN	FOCAL	6	"C7orf72,COBL,DDC,FIGNL1,GRB10,IKZF1"
TCGA.AA.3941	7	50305862	51730791	588	0.6762	SMALL-GAIN	FOCAL	5	"COBL,DDC,FIGNL1,GRB10,IKZF1"
TCGA.AA.3844	7	50355206	50933119	294	0.6049	SMALL-GAIN	FOCAL	4	"DDC,FIGNL1,GRB10,IKZF1"
TCGA.AG.A00C.01A	7	50455014	50537720	8	0.5093	SMALL-GAIN	FOCAL	3	"DDC,FIGNL1,IKZF1"
TCGA.AA.3844	7	51025936	51730791	254	0.5652	SMALL-GAIN	FOCAL	1	COBL
TCGA.DM.A1D4	7	51345181	52725487	602	0.4627	SMALL-GAIN	FOCAL	1	COBL
TCGA.AA.3696	7	51954100	54912827	1091	0.4364	SMALL-GAIN	FOCAL	3	"POM121L12,SEC61G,VSTM2A"
TCGA.DM.A1D4	7	52755013	53458289	253	0.3982	SMALL-GAIN	FOCAL	1	POM121L12
TCGA.A6.5661	7	54188804	54658567	131	0.544	SMALL-GAIN	FOCAL	1	VSTM2A
TCGA.AA.3941	7	54658402	54875530	110	0.6771	SMALL-GAIN	FOCAL	1	SEC61G
TCGA.AA.3850	7	55088414	55668479	231	0.43645	SMALL-GAIN	FOCAL	3	"EGFR,LANCL2,VOPP1"
TCGA.AA.3930.01A	7	55559937	56130336	43	0.4622	SMALL-GAIN	FOCAL	7	"CCT6A,GBAS,MRPS17,PSPH,SEPT14,VOPP1,ZNF713"
TCGA.AG.3909.01A	7	55588708	56052484	21	0.6143	SMALL-GAIN	FOCAL	5	"GBAS,MRPS17,SEPT14,VOPP1,ZNF713"
TCGA.AA.3850	7	55724400	56226910	51	0.51495	SMALL-GAIN	FOCAL	10	"CCT6A,CHCHD2,GBAS,MRPS17,NUPR1L,PHKG1,PSPH,SEPT14,SUMF2,ZNF713"
TCGA.AA.3811	7	55790603	56198736	33	0.5946	SMALL-GAIN	FOCAL	10	"CCT6A,CHCHD2,GBAS,MRPS17,NUPR1L,PHKG1,PSPH,SEPT14,SUMF2,ZNF713"
TCGA.AG.3891.01A	7	56006648	56136133	31	0.4729	SMALL-GAIN	FOCAL	6	"CCT6A,GBAS,MRPS17,PSPH,SUMF2,ZNF713"
TCGA.AG.3906.01A	7	56020840	56140643	30	0.6251	SMALL-GAIN	FOCAL	5	"CCT6A,GBAS,MRPS17,PSPH,SUMF2"
TCGA.AA.3941	7	56683150	57566929	138	0.5254	SMALL-GAIN	FOCAL	2	"ZNF479,ZNF716"
TCGA.A6.A56B	7	56700553	61072036	162	0.4956	SMALL-GAIN	FOCAL	2	"ZNF479,ZNF716"
TCGA.A6.6782	7	57448228	57620766	46	0.4627	SMALL-GAIN	FOCAL	1	ZNF716
TCGA.AA.3941	7	62453695	63832180	187	0.4096	SMALL-GAIN	FOCAL	4	"ZNF679,ZNF727,ZNF735,ZNF736"
TCGA.AA.3941	7	63859589	65184338	178	0.5082	SMALL-GAIN	FOCAL	7	"ERV3-1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF680,ZNF92"
TCGA.AA.A00D.01A	7	64004632	64441685	21	0.5787	SMALL-GAIN	FOCAL	5	"ZNF107,ZNF117,ZNF138,ZNF273,ZNF680"
TCGA.AG.A00C.01A	7	64152333	64291277	10	0.5702	SMALL-GAIN	FOCAL	2	"ZNF107,ZNF138"
TCGA.AA.A00F.01A	7	64291791	65552676	35	0.4583	SMALL-GAIN	FOCAL	8	"ASL,ERV3-1,GUSB,VKORC1L1,ZNF117,ZNF138,ZNF273,ZNF92"
TCGA.CI.6619	7	64462325	65265179	63	0.6408	SMALL-GAIN	FOCAL	2	"ERV3-1,ZNF92"
TCGA.AG.4009.01A	7	64853760	65841962	38	0.5382	SMALL-GAIN	FOCAL	6	"ASL,CRCP,GUSB,TPST1,VKORC1L1,ZNF92"
TCGA.AA.3982	7	65184338	66320710	100	0.6513	SMALL-GAIN	FOCAL	7	"ASL,CRCP,GUSB,KCTD7,RABGEF1,TPST1,VKORC1L1"
TCGA.AA.3941	7	65703921	65920197	20	0.5984	SMALL-GAIN	FOCAL	1	TPST1
TCGA.AG.4009.01A	7	66236857	72297416	86	0.4713	SMALL-GAIN	FOCAL	8	"AUTS2,CALN1,RABGEF1,SBDS,TMEM248,TYW1,TYW1B,WBSCR17"
TCGA.AG.3611.01A	7	66260447	66774561	33	0.6384	SMALL-GAIN	FOCAL	4	"RABGEF1,SBDS,TMEM248,TYW1"
TCGA.AA.3982	7	66377233	67606032	319	0.3834	SMALL-GAIN	FOCAL	3	"SBDS,TMEM248,TYW1"
TCGA.AA.3941	7	66665885	68753556	730	0.5625	SMALL-GAIN	FOCAL	1	TYW1
TCGA.AA.3495	7	66832227	70996731	1318	0.6114	SMALL-GAIN	FOCAL	2	"AUTS2,WBSCR17"
TCGA.AA.3982	7	67683966	67863726	68	0.4803	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	7	67868885	69080199	399	0.5417	SMALL-GAIN	FOCAL	1	AUTS2
TCGA.AA.3941	7	69510531	72884187	857	0.6627	SMALL-GAIN	FOCAL	10	"AUTS2,BAZ1B,CALN1,FKBP6,FZD9,NSUN5,POM121,TRIM50,TYW1B,WBSCR17"
TCGA.AG.A01W.01A	7	69879965	70235696	8	0.566	SMALL-GAIN	FOCAL	1	AUTS2
TCGA.AA.3982	7	70036000	70428242	175	0.6417	SMALL-GAIN	FOCAL	1	AUTS2
TCGA.AG.3909.01A	7	72285907	72298572	3	0.5333	SMALL-GAIN	FOCAL	1	TYW1B
TCGA.AG.3909.01A	7	72857018	72957836	21	0.3794	SMALL-GAIN	FOCAL	2	"BAZ1B,BCL7B"
TCGA.AG.3909.01A	7	73010495	73085317	10	0.4601	SMALL-GAIN	FOCAL	2	"MLXIPL,VPS37D"
TCGA.AG.A01W.01A	7	73093401	73100697	10	0.4283	SMALL-GAIN	FOCAL	2	"DNAJC30,WBSCR22"
TCGA.AG.3909.01A	7	73461924	73935484	75	0.5513	SMALL-GAIN	FOCAL	7	"CLIP2,EIF4H,ELN,GTF2IRD1,LAT2,LIMK1,RFC2"
TCGA.AG.4009.01A	7	73466074	73535429	27	0.6713	SMALL-GAIN	FOCAL	2	"ELN,LIMK1"
TCGA.AA.A00Q.01A	7	73646387	74114918	55	0.4484	SMALL-GAIN	FOCAL	4	"CLIP2,GTF2I,GTF2IRD1,RFC2"
TCGA.AA.A00A.01A	7	73752731	73811356	12	0.5215	SMALL-GAIN	FOCAL	1	CLIP2
TCGA.AA.A010.01A	7	73954152	74210962	42	0.5597	SMALL-GAIN	FOCAL	4	"GTF2I,GTF2IRD1,GTF2IRD2,NCF1"
TCGA.CK.5914.01A	7	73959007	74148197	25	0.6709	SMALL-GAIN	FOCAL	2	"GTF2I,GTF2IRD1"
TCGA.AG.3909.01A	7	73959007	74300522	49	0.5065	SMALL-GAIN	FOCAL	4	"GTF2I,GTF2IRD1,GTF2IRD2,NCF1"
TCGA.AA.A00A.01A	7	74004127	75045249	32	0.4482	SMALL-GAIN	FOCAL	9	"GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,NCF1,TRIM73,TRIM74,WBSCR16"
TCGA.AG.4009.01A	7	74015324	74191556	26	0.3872	SMALL-GAIN	FOCAL	3	"GTF2I,GTF2IRD1,NCF1"
TCGA.AG.3909.01A	7	74524709	75028180	11	0.6056	SMALL-GAIN	FOCAL	5	"GATSL2,GTF2IRD2,GTF2IRD2B,TRIM73,TRIM74"
TCGA.AG.4009.01A	7	74528144	75055592	21	0.4802	SMALL-GAIN	FOCAL	6	"GATSL2,GTF2IRD2,GTF2IRD2B,POM121C,TRIM73,TRIM74"
TCGA.AG.4009.01A	7	75140367	75687245	59	0.5489	SMALL-GAIN	FOCAL	8	"CCL24,CCL26,HIP1,MDH2,POR,RHBDD2,STYXL1,TMEM120A"
TCGA.AA.A010.01A	7	75145046	75517268	42	0.6537	SMALL-GAIN	FOCAL	4	"CCL24,CCL26,HIP1,RHBDD2"
TCGA.AG.3909.01A	7	75197431	75398963	9	0.6224	SMALL-GAIN	FOCAL	2	"CCL26,HIP1"
TCGA.AA.A00N.01A	7	75210502	75508351	13	0.5797	SMALL-GAIN	FOCAL	4	"CCL24,CCL26,HIP1,RHBDD2"
TCGA.AA.A00F.01A	7	75625739	76033572	28	0.5941	SMALL-GAIN	FOCAL	7	"HSPB1,MDH2,SRRM3,SSC4D,STYXL1,YWHAG,ZP3"
TCGA.CI.6621	7	75719454	76752413	105	0.4884	SMALL-GAIN	FOCAL	9	"CCDC146,DTX2,HSPB1,POMZP3,SRRM3,SSC4D,UPK3B,YWHAG,ZP3"
TCGA.AA.A01Q.01A	7	76054323	76144335	13	0.5299	SMALL-GAIN	FOCAL	3	"DTX2,UPK3B,ZP3"
TCGA.DY.A1DC	7	76488916	79267554	924	0.4458	SMALL-GAIN	FOCAL	8	"CCDC146,FGL2,GSAP,MAGI2,PHTF2,PTPN12,RSBN1L,TMEM60"
TCGA.AA.3941	7	76712800	77882367	367	0.5681	SMALL-GAIN	FOCAL	8	"CCDC146,FGL2,GSAP,MAGI2,PHTF2,PTPN12,RSBN1L,TMEM60"
TCGA.AA.A00N.01A	7	76825638	77016623	43	0.4664	SMALL-GAIN	FOCAL	3	"CCDC146,FGL2,GSAP"
TCGA.AG.4009.01A	7	76866205	76958581	27	0.5599	SMALL-GAIN	FOCAL	2	"CCDC146,GSAP"
TCGA.CK.5914.01A	7	76902982	77006566	31	0.6278	SMALL-GAIN	FOCAL	2	"CCDC146,GSAP"
TCGA.AG.A00C.01A	7	77006566	77035298	8	0.3884	SMALL-GAIN	FOCAL	1	GSAP
TCGA.AA.A010.01A	7	77210696	77998414	57	0.4669	SMALL-GAIN	FOCAL	5	"MAGI2,PHTF2,PTPN12,RSBN1L,TMEM60"
TCGA.AA.A00N.01A	7	77522856	77754991	20	0.6433	SMALL-GAIN	FOCAL	2	"MAGI2,PHTF2"
TCGA.AG.3882	7	77622696	78002023	216	0.5821	SMALL-GAIN	FOCAL	1	MAGI2
TCGA.AA.A01Q.01A	7	77756466	77807272	6	0.634	SMALL-GAIN	FOCAL	1	MAGI2
TCGA.DM.A28M.01A	7	77998414	81594847	76	0.5775	SMALL-GAIN	FOCAL	7	"CACNA2D1,CD36,GNAI1,GNAT3,HGF,MAGI2,SEMA3C"
TCGA.DY.A1DC	7	79291505	84201865	1625	0.443	SMALL-GAIN	FOCAL	9	"CACNA2D1,CD36,GNAI1,GNAT3,HGF,PCLO,SEMA3A,SEMA3C,SEMA3E"
TCGA.AA.A010.01A	7	80380517	80447567	12	0.6169	SMALL-GAIN	FOCAL	1	SEMA3C
TCGA.AY.4070	7	83027344	85335317	651	0.4467	SMALL-GAIN	FOCAL	3	"SEMA3A,SEMA3D,SEMA3E"
TCGA.DY.A1DC	7	84206518	85174832	204	0.4416	SMALL-GAIN	FOCAL	1	SEMA3D
TCGA.DM.A28F	7	84948432	85802229	194	0.6168	SMALL-GAIN	FOCAL	0	None
TCGA.AY.4070	7	85419010	87054246	382	0.5906	SMALL-GAIN	FOCAL	6	"ABCB4,CROT,DMTF1,GRM3,KIAA1324L,TMEM243"
TCGA.CK.5914.01A	7	87258090	87505974	23	0.615	SMALL-GAIN	FOCAL	4	"ABCB1,DBF4,RUNDC3B,SLC25A40"
TCGA.AG.3909.01A	7	87280088	87479143	18	0.635	SMALL-GAIN	FOCAL	3	"ABCB1,RUNDC3B,SLC25A40"
TCGA.CK.5914.01A	7	87536501	87815885	31	0.6089	SMALL-GAIN	FOCAL	2	"ADAM22,DBF4"
TCGA.AA.A02K.01A	7	87563736	87607610	3	0.5973	SMALL-GAIN	FOCAL	1	ADAM22
TCGA.CK.4948.01B	7	87780522	87808198	8	0.6178	SMALL-GAIN	FOCAL	1	ADAM22
TCGA.CI.6621	7	88511232	89884824	417	0.6322	SMALL-GAIN	FOCAL	4	"CFAP69,STEAP1,STEAP2,ZNF804B"
TCGA.AA.A00N.01A	7	89859149	89912169	16	0.648	SMALL-GAIN	FOCAL	2	"CFAP69,STEAP2"
TCGA.AG.3909.01A	7	89866155	91641696	60	0.5135	SMALL-GAIN	FOCAL	8	"AKAP9,CDK14,CFAP69,CLDN12,FZD1,GTPBP10,MTERF1,STEAP2"
TCGA.CI.6621	7	90290391	92145949	434	0.3931	SMALL-GAIN	FOCAL	10	"AKAP9,ANKIB1,CDK14,CYP51A1,FZD1,GATAD1,KRIT1,LRRD1,MTERF1,PEX1"
TCGA.AA.A00N.01A	7	91570339	91630160	8	0.432	SMALL-GAIN	FOCAL	1	AKAP9
TCGA.CK.5914.01A	7	91570339	91630160	8	0.4305	SMALL-GAIN	FOCAL	1	AKAP9
TCGA.CK.5914.01A	7	91671328	91714777	18	0.6521	SMALL-GAIN	FOCAL	1	AKAP9
TCGA.AA.A00N.01A	7	91674285	91734958	27	0.632	SMALL-GAIN	FOCAL	1	AKAP9
TCGA.AG.3909.01A	7	91682023	91746326	31	0.6015	SMALL-GAIN	FOCAL	2	"AKAP9,CYP51A1"
TCGA.AG.3909.01A	7	91793750	91855808	10	0.5003	SMALL-GAIN	FOCAL	2	"KRIT1,LRRD1"
TCGA.AG.3909.01A	7	92098074	92147427	24	0.5679	SMALL-GAIN	FOCAL	1	PEX1
TCGA.AA.A00N.01A	7	92300689	93108625	52	0.6716	SMALL-GAIN	FOCAL	6	"CALCR,CCDC132,CDK6,HEPACAM2,SAMD9,SAMD9L"
TCGA.AA.A01C.01A	7	92855629	93067319	32	0.5475	SMALL-GAIN	FOCAL	3	"CALCR,CCDC132,HEPACAM2"
TCGA.AG.A01N.01A	7	92869155	93063509	28	0.4034	SMALL-GAIN	FOCAL	2	"CALCR,CCDC132"
TCGA.AA.A010.01A	7	93516079	94043460	34	0.5685	SMALL-GAIN	FOCAL	5	"BET1,COL1A2,GNG11,GNGT1,TFPI2"
TCGA.AA.A00N.01A	7	94037435	94048750	15	0.5394	SMALL-GAIN	FOCAL	1	COL1A2
TCGA.AG.3909.01A	7	94040131	94047751	10	0.462	SMALL-GAIN	FOCAL	1	COL1A2
TCGA.AA.A01C.01A	7	94047751	94897815	55	0.6015	SMALL-GAIN	FOCAL	5	"CASD1,COL1A2,PEG10,PPP1R9A,SGCE"
TCGA.AG.A01W.01A	7	94052655	94766143	33	0.4987	SMALL-GAIN	FOCAL	5	"CASD1,COL1A2,PEG10,PPP1R9A,SGCE"
TCGA.AG.3909.01A	7	94164584	94285252	23	0.6493	SMALL-GAIN	FOCAL	2	"CASD1,SGCE"
TCGA.DC.6682	7	94334231	94358657	7	0.5352	SMALL-GAIN	FOCAL	0	None
TCGA.DC.6682	7	94524305	95436434	279	0.5116	SMALL-GAIN	FOCAL	7	"ASB4,DYNC1I1,PDK4,PON1,PON2,PON3,PPP1R9A"
TCGA.AA.3941	7	94600304	94843348	36	0.5388	SMALL-GAIN	FOCAL	1	PPP1R9A
TCGA.AG.3891.01A	7	94876760	94881025	3	0.5198	SMALL-GAIN	FOCAL	1	PPP1R9A
TCGA.AG.A01N.01A	7	94897815	96324057	82	0.4509	SMALL-GAIN	FOCAL	10	"ASB4,C7orf76,DYNC1I1,PDK4,PON1,PON2,PON3,PPP1R9A,SHFM1,SLC25A13"
TCGA.AA.A01C.01A	7	94945977	95216272	27	0.4715	SMALL-GAIN	FOCAL	5	"ASB4,PDK4,PON1,PON2,PON3"
TCGA.CK.5914.01A	7	95225428	96338936	37	0.6607	SMALL-GAIN	FOCAL	5	"C7orf76,DYNC1I1,PDK4,SHFM1,SLC25A13"
TCGA.AA.A01C.01A	7	95434024	96338936	36	0.6002	SMALL-GAIN	FOCAL	4	"C7orf76,DYNC1I1,SHFM1,SLC25A13"
TCGA.AG.3909.01A	7	95705361	96338936	23	0.6235	SMALL-GAIN	FOCAL	4	"C7orf76,DYNC1I1,SHFM1,SLC25A13"
TCGA.AA.3941	7	95722666	96130637	88	0.4923	SMALL-GAIN	FOCAL	3	"C7orf76,DYNC1I1,SLC25A13"
TCGA.AA.3941	7	96547714	97611340	253	0.4379	SMALL-GAIN	FOCAL	5	"ASNS,DLX5,DLX6,SDHAF3,TAC1"
TCGA.AG.4009.01A	7	97481551	97816152	22	0.5401	SMALL-GAIN	FOCAL	3	"ASNS,LMTK2,OCM2"
TCGA.AA.A00F.01A	7	97617681	98460709	43	0.4426	SMALL-GAIN	FOCAL	8	"BAIAP2L1,BHLHA15,BRI3,LMTK2,NPTX2,OCM2,TECPR1,TMEM130"
TCGA.AG.A01W.01A	7	97638758	97760716	34	0.4894	SMALL-GAIN	FOCAL	1	LMTK2
TCGA.AA.A010.01A	7	97946494	98030038	5	0.5542	SMALL-GAIN	FOCAL	1	BAIAP2L1
TCGA.AG.A01W.01A	7	98316671	98344256	13	0.4572	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	7	98396773	98485101	37	0.3873	SMALL-GAIN	FOCAL	2	"TMEM130,TRRAP"
TCGA.AG.3906.01A	7	98445632	98479536	9	0.6308	SMALL-GAIN	FOCAL	2	"TMEM130,TRRAP"
TCGA.AA.A00F.01A	7	98503748	98994238	92	0.4542	SMALL-GAIN	FOCAL	6	"ARPC1A,ARPC1B,KPNA7,PDAP1,SMURF1,TRRAP"
TCGA.AG.4009.01A	7	98506312	98930907	72	0.5913	SMALL-GAIN	FOCAL	4	"ARPC1A,KPNA7,SMURF1,TRRAP"
TCGA.AG.3909.01A	7	98630621	98961112	23	0.636	SMALL-GAIN	FOCAL	3	"ARPC1A,KPNA7,SMURF1"
TCGA.AG.A01W.01A	7	98822198	98832175	7	0.4942	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	7	98859328	98870303	6	0.6044	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	7	99063650	99226774	31	0.635	SMALL-GAIN	FOCAL	9	"ATP5J2,ATP5J2-PTCD1,FAM200A,GS1-259H13.2,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AG.4009.01A	7	99063650	99262762	38	0.6131	SMALL-GAIN	FOCAL	10	"ATP5J2,ATP5J2-PTCD1,CYP3A5,FAM200A,GS1-259H13.2,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AG.A01W.01A	7	99088062	99155831	21	0.6416	SMALL-GAIN	FOCAL	3	"FAM200A,ZKSCAN5,ZNF394"
TCGA.AG.3909.01A	7	99258085	99273686	9	0.4675	SMALL-GAIN	FOCAL	1	CYP3A5
TCGA.AA.A01C.01A	7	99258085	99308315	14	0.4107	SMALL-GAIN	FOCAL	3	"CYP3A5,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AA.A00N.01A	7	99258085	99328632	22	0.4205	SMALL-GAIN	FOCAL	3	"CYP3A5,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AA.A01C.01A	7	99328632	99459188	26	0.4583	SMALL-GAIN	FOCAL	4	"CYP3A4,CYP3A43,CYP3A7,CYP3A7-CYP3A51P"
TCGA.AA.A00N.01A	7	99375587	99459188	14	0.3999	SMALL-GAIN	FOCAL	2	"CYP3A4,CYP3A43"
TCGA.CK.5914.01A	7	99425673	99463480	13	0.5317	SMALL-GAIN	FOCAL	1	CYP3A43
TCGA.AG.A00C.01A	7	99473638	99526436	11	0.5189	SMALL-GAIN	FOCAL	3	"GJC3,OR2AE1,TRIM4"
TCGA.AG.3909.01A	7	99516604	99674857	21	0.427	SMALL-GAIN	FOCAL	6	"AZGP1,GJC3,TRIM4,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AG.A01W.01A	7	99533664	99541441	12	0.5922	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00L.01A	7	99627822	99672731	7	0.56	SMALL-GAIN	FOCAL	3	"ZKSCAN1,ZNF3,ZSCAN21"
TCGA.CK.5914.01A	7	99746506	99753243	6	0.5613	SMALL-GAIN	FOCAL	2	"C7orf43,LAMTOR4"
TCGA.AG.4009.01A	7	99801602	99831176	11	0.6664	SMALL-GAIN	FOCAL	3	"GATS,PVRIG,STAG3"
TCGA.AG.3909.01A	7	99987511	100027660	22	0.4711	SMALL-GAIN	FOCAL	3	"MEPCE,PILRA,ZCWPW1"
TCGA.AG.A01L.01A	7	99996839	100006110	12	0.6192	SMALL-GAIN	FOCAL	2	"PILRA,ZCWPW1"
TCGA.AA.A02K.01A	7	100013552	100071851	16	0.5334	SMALL-GAIN	FOCAL	5	"C7orf61,MEPCE,PPP1R35,TSC22D4,ZCWPW1"
TCGA.AG.4009.01A	7	100183462	100253007	38	0.5889	SMALL-GAIN	FOCAL	6	"ACTL6B,FBXO24,LRCH4,MOSPD3,PCOLCE,TFR2"
TCGA.AA.A02K.01A	7	100218433	100253368	18	0.5207	SMALL-GAIN	FOCAL	2	"ACTL6B,TFR2"
TCGA.AA.A02K.01A	7	100284920	100404951	53	0.4809	SMALL-GAIN	FOCAL	5	"EPHB4,EPO,GIGYF1,POP7,ZAN"
TCGA.AG.3909.01A	7	100334414	100352802	10	0.6102	SMALL-GAIN	FOCAL	1	ZAN
TCGA.AA.A01Q.01A	7	100361381	100403113	9	0.4374	SMALL-GAIN	FOCAL	2	"EPHB4,ZAN"
TCGA.AG.3891.01A	7	100372920	100421762	29	0.5797	SMALL-GAIN	FOCAL	2	"EPHB4,ZAN"
TCGA.AG.A00C.01A	7	100392766	100485636	46	0.41	SMALL-GAIN	FOCAL	5	"EPHB4,SLC12A9,SRRT,TRIP6,ZAN"
TCGA.AG.4009.01A	7	100452193	100479654	20	0.6205	SMALL-GAIN	FOCAL	3	"SLC12A9,SRRT,TRIP6"
TCGA.AA.A00D.01A	7	100473185	100485307	13	0.634	SMALL-GAIN	FOCAL	1	SRRT
TCGA.AA.A00Q.01A	7	100473185	100803775	49	0.4519	SMALL-GAIN	FOCAL	9	"ACHE,AP1S1,MUC12,MUC17,MUC3A,SERPINE1,SRRT,TRIM56,UFSP1"
TCGA.AG.3891.01A	7	100483281	100486445	7	0.6722	SMALL-GAIN	FOCAL	2	"SRRT,UFSP1"
TCGA.AG.A01L.01A	7	100489933	100681345	11	0.6629	SMALL-GAIN	FOCAL	4	"ACHE,MUC12,MUC17,MUC3A"
TCGA.CI.6621	7	100498474	100721249	22	0.5526	SMALL-GAIN	FOCAL	3	"MUC12,MUC17,MUC3A"
TCGA.AA.A010.01A	7	100663356	100699413	20	0.4581	SMALL-GAIN	FOCAL	1	MUC17
TCGA.AG.4009.01A	7	100663356	100730542	22	0.4006	SMALL-GAIN	FOCAL	2	"MUC17,TRIM56"
TCGA.AA.A00N.01A	7	100663356	100780225	28	0.5183	SMALL-GAIN	FOCAL	3	"MUC17,SERPINE1,TRIM56"
TCGA.AG.3906.01A	7	100691228	100817730	24	0.6325	SMALL-GAIN	FOCAL	6	"AP1S1,MUC17,NAT16,SERPINE1,TRIM56,VGF"
TCGA.AG.4009.01A	7	100771708	100780637	7	0.6724	SMALL-GAIN	FOCAL	1	SERPINE1
TCGA.AG.4009.01A	7	100841435	101848321	58	0.6611	SMALL-GAIN	FOCAL	9	"CLDN15,COL26A1,CUX1,FIS1,IFT22,MOGAT3,MYL10,PLOD3,ZNHIT1"
TCGA.AA.A010.01A	7	100849515	101870605	69	0.5605	SMALL-GAIN	FOCAL	8	"CLDN15,COL26A1,CUX1,FIS1,IFT22,MYL10,PLOD3,ZNHIT1"
TCGA.CK.5914.01A	7	100964870	101200600	14	0.632	SMALL-GAIN	FOCAL	2	"COL26A1,IFT22"
TCGA.AG.3909.01A	7	101063210	101821699	24	0.5837	SMALL-GAIN	FOCAL	3	"COL26A1,CUX1,MYL10"
TCGA.AG.3906.01A	7	101877334	102097810	19	0.6633	SMALL-GAIN	FOCAL	7	"ALKBH4,CUX1,LOC100289561,ORAI2,PRKRIP1,SH2B2,SPDYE6"
TCGA.AG.4009.01A	7	101988727	102047817	6	0.5449	SMALL-GAIN	FOCAL	3	"LOC100289561,PRKRIP1,SPDYE6"
TCGA.AG.4009.01A	7	102136518	102669730	25	0.5374	SMALL-GAIN	FOCAL	10	"FAM185A,FBXL13,LRRC17,POLR2J2,POLR2J3,RASA4,RASA4B,SPDYE2,SPDYE2B,UPK3BL"
TCGA.AA.3941	7	102351846	103278621	174	0.5409	SMALL-GAIN	FOCAL	10	"ARMC10,DNAJC2,FAM185A,FBXL13,LRRC17,NAPEPLD,PMPCB,PSMC2,RELN,SLC26A5"
TCGA.CK.5914.01A	7	102401671	102608419	22	0.4038	SMALL-GAIN	FOCAL	3	"FAM185A,FBXL13,LRRC17"
TCGA.AA.3844	7	102458295	103294446	175	0.3953	SMALL-GAIN	FOCAL	9	"ARMC10,DNAJC2,FBXL13,LRRC17,NAPEPLD,PMPCB,PSMC2,RELN,SLC26A5"
TCGA.AG.3909.01A	7	102732892	102937860	8	0.6267	SMALL-GAIN	FOCAL	2	"ARMC10,NAPEPLD"
TCGA.AA.A010.01A	7	102937860	103033314	47	0.5987	SMALL-GAIN	FOCAL	4	"DNAJC2,PMPCB,PSMC2,SLC26A5"
TCGA.AG.3909.01A	7	102996092	103020864	13	0.5651	SMALL-GAIN	FOCAL	2	"PSMC2,SLC26A5"
TCGA.AA.A01C.01A	7	103004581	103206996	51	0.386	SMALL-GAIN	FOCAL	3	"PSMC2,RELN,SLC26A5"
TCGA.AA.A02F.01A	7	103061170	105098190	115	0.5586	SMALL-GAIN	FOCAL	7	"KMT2E,LHFPL3,ORC5,PUS7,RELN,SLC26A5,SRPK2"
TCGA.AA.A010.01A	7	103155595	103215948	20	0.5104	SMALL-GAIN	FOCAL	1	RELN
TCGA.CK.5914.01A	7	103179487	103234102	17	0.6269	SMALL-GAIN	FOCAL	1	RELN
TCGA.CK.5914.01A	7	103338262	103801470	13	0.6335	SMALL-GAIN	FOCAL	2	"ORC5,RELN"
TCGA.AA.A02H.01A	7	103341309	104909205	61	0.5457	SMALL-GAIN	FOCAL	5	"KMT2E,LHFPL3,ORC5,RELN,SRPK2"
TCGA.AG.3591	7	103410844	103504577	45	0.5327	SMALL-GAIN	FOCAL	1	RELN
TCGA.AG.A00C.01A	7	103835544	103844565	4	0.482	SMALL-GAIN	FOCAL	1	ORC5
TCGA.AA.3872	7	104276199	106187809	635	0.4544	SMALL-GAIN	FOCAL	9	"ATXN7L1,CDHR3,KMT2E,LHFPL3,NAMPT,PUS7,RINT1,SRPK2,SYPL1"
TCGA.AA.A00N.01A	7	104377125	105172694	54	0.6063	SMALL-GAIN	FOCAL	5	"KMT2E,LHFPL3,PUS7,RINT1,SRPK2"
TCGA.AA.3844	7	104435896	105933202	466	0.5847	SMALL-GAIN	FOCAL	9	"ATXN7L1,CDHR3,KMT2E,LHFPL3,NAMPT,PUS7,RINT1,SRPK2,SYPL1"
TCGA.CI.6621	7	104676521	104877746	28	0.545	SMALL-GAIN	FOCAL	2	"KMT2E,SRPK2"
TCGA.AA.3941	7	106192960	107361435	297	0.4527	SMALL-GAIN	FOCAL	9	"BCAP29,CCDC71L,COG5,DUS4L,GPR22,HBP1,PIK3CG,PRKAR2B,SLC26A4"
TCGA.CI.6621	7	106193954	106372621	63	0.4286	SMALL-GAIN	FOCAL	1	CCDC71L
TCGA.CK.5914.01A	7	106526558	106791330	9	0.4898	SMALL-GAIN	FOCAL	2	"PIK3CG,PRKAR2B"
TCGA.CK.5914.01A	7	106822791	107188499	27	0.4058	SMALL-GAIN	FOCAL	3	"COG5,GPR22,HBP1"
TCGA.AA.A00N.01A	7	106826205	107114456	22	0.4878	SMALL-GAIN	FOCAL	3	"COG5,GPR22,HBP1"
TCGA.AG.3909.01A	7	106840558	107188499	21	0.6147	SMALL-GAIN	FOCAL	3	"COG5,GPR22,HBP1"
TCGA.AG.A00C.01A	7	107207466	107236265	10	0.5311	SMALL-GAIN	FOCAL	2	"BCAP29,DUS4L"
TCGA.AG.3909.01A	7	107234348	107434797	46	0.5518	SMALL-GAIN	FOCAL	4	"BCAP29,CBLL1,SLC26A3,SLC26A4"
TCGA.CK.5914.01A	7	107323625	107546674	43	0.593	SMALL-GAIN	FOCAL	4	"CBLL1,DLD,SLC26A3,SLC26A4"
TCGA.AG.3909.01A	7	107555920	107571761	10	0.6152	SMALL-GAIN	FOCAL	2	"DLD,LAMB1"
TCGA.AG.3909.01A	7	107618465	107621054	2	0.6365	SMALL-GAIN	FOCAL	1	LAMB1
TCGA.AA.A00D.01A	7	107621054	107643226	6	0.3959	SMALL-GAIN	FOCAL	1	LAMB1
TCGA.AG.3909.01A	7	107746235	108155580	46	0.5589	SMALL-GAIN	FOCAL	3	"LAMB4,NRCAM,PNPLA8"
TCGA.DY.A1DC	7	107809926	110724473	870	0.4481	SMALL-GAIN	FOCAL	6	"C7orf66,DNAJB9,IMMP2L,NRCAM,PNPLA8,THAP5"
TCGA.DM.A28F	7	109320012	110036802	180	0.4083	SMALL-GAIN	FOCAL	0	None
TCGA.AY.4070	7	109320114	109848852	121	0.676	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DD	7	110016908	110110565	44	0.4638	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3524	7	110303526	110790006	138	0.4641	SMALL-GAIN	FOCAL	2	"IMMP2L,LRRN3"
TCGA.CM.5860	7	110432526	111195438	135	0.5887	SMALL-GAIN	FOCAL	2	"IMMP2L,LRRN3"
TCGA.CK.4948.01B	7	114298089	115850689	20	0.6359	SMALL-GAIN	FOCAL	4	"FOXP2,MDFIC,TES,TFEC"
TCGA.AA.A00N.01A	7	116371675	116557732	28	0.4501	SMALL-GAIN	FOCAL	2	"CAPZA2,MET"
TCGA.CK.5914.01A	7	116607308	116759565	8	0.402	SMALL-GAIN	FOCAL	1	ST7
TCGA.AY.4070	7	116952670	120330665	655	0.6432	SMALL-GAIN	FOCAL	7	"ANKRD7,ASZ1,CFTR,CTTNBP2,KCND2,LSM8,WNT2"
TCGA.AG.3909.01A	7	117067372	117199480	12	0.5648	SMALL-GAIN	FOCAL	2	"ASZ1,CFTR"
TCGA.AA.A00F.01A	7	117188718	117254629	12	0.6429	SMALL-GAIN	FOCAL	1	CFTR
TCGA.AG.3727	7	117261292	117395159	34	0.408	SMALL-GAIN	FOCAL	2	"CFTR,CTTNBP2"
TCGA.AA.A00F.01A	7	117501214	117831914	5	0.672	SMALL-GAIN	FOCAL	2	"CTTNBP2,LSM8"
TCGA.AG.3591	7	118468610	120263357	289	0.4528	SMALL-GAIN	FOCAL	1	KCND2
TCGA.AA.A00D.01A	7	120480021	120704232	19	0.5005	SMALL-GAIN	FOCAL	3	"CPED1,ING3,TSPAN12"
TCGA.AA.A00F.01A	7	120593311	120704232	15	0.5359	SMALL-GAIN	FOCAL	2	"CPED1,ING3"
TCGA.CK.5914.01A	7	121644590	121942084	42	0.6412	SMALL-GAIN	FOCAL	3	"AASS,FEZF1,PTPRZ1"
TCGA.AG.3909.01A	7	121753125	121773529	8	0.4577	SMALL-GAIN	FOCAL	1	AASS
TCGA.AA.A00F.01A	7	121769368	122033262	7	0.6427	SMALL-GAIN	FOCAL	3	"AASS,CADPS2,FEZF1"
TCGA.AG.4009.01A	7	121965484	122091401	11	0.4008	SMALL-GAIN	FOCAL	1	CADPS2
TCGA.AG.A026	7	123382151	123395982	6	0.6641	SMALL-GAIN	FOCAL	1	WASL
TCGA.AA.3982	7	126795616	127554106	248	0.608	SMALL-GAIN	FOCAL	7	"ARF5,FSCN3,GCC1,GRM8,PAX4,SND1,ZNF800"
TCGA.AG.A00C.01A	7	127013368	127229500	8	0.4728	SMALL-GAIN	FOCAL	3	"ARF5,GCC1,ZNF800"
TCGA.AA.A02H.01A	7	127026073	127224184	4	0.3788	SMALL-GAIN	FOCAL	2	"GCC1,ZNF800"
TCGA.AG.A01W.01A	7	127040261	127501753	27	0.6166	SMALL-GAIN	FOCAL	5	"ARF5,FSCN3,GCC1,PAX4,SND1"
TCGA.AA.3941	7	127071462	127617771	137	0.4555	SMALL-GAIN	FOCAL	5	"ARF5,FSCN3,GCC1,PAX4,SND1"
TCGA.AA.3866	7	127711700	127887138	56	0.4719	SMALL-GAIN	FOCAL	2	"LEP,SND1"
TCGA.AA.A010.01A	7	128097276	128320048	15	0.4273	SMALL-GAIN	FOCAL	3	"FAM71F2,HILPDA,METTL2B"
TCGA.AA.A00Q.01A	7	128116798	128495216	31	0.6558	SMALL-GAIN	FOCAL	7	"CALU,CCDC136,FAM71F1,FAM71F2,FLNC,METTL2B,OPN1SW"
TCGA.AG.4009.01A	7	128117083	128141778	8	0.5144	SMALL-GAIN	FOCAL	1	METTL2B
TCGA.AG.3906.01A	7	128119195	128141778	7	0.606	SMALL-GAIN	FOCAL	1	METTL2B
TCGA.A6.3808.01A	7	128312414	128432392	24	0.5058	SMALL-GAIN	FOCAL	5	"CALU,CCDC136,FAM71F1,FAM71F2,OPN1SW"
TCGA.AG.3906.01A	7	128450144	128502920	37	0.4894	SMALL-GAIN	FOCAL	3	"ATP6V1F,CCDC136,FLNC"
TCGA.AA.3861.01A	7	128450144	129029448	111	0.511	SMALL-GAIN	FOCAL	10	"AHCYL2,ATP6V1F,CCDC136,FLNC,IRF5,KCP,LOC100130705,SMO,TNPO3,TSPAN33"
TCGA.AA.3862.01A	7	128450144	129029448	110	0.497	SMALL-GAIN	FOCAL	10	"AHCYL2,ATP6V1F,CCDC136,FLNC,IRF5,KCP,LOC100130705,SMO,TNPO3,TSPAN33"
TCGA.AA.A02K.01A	7	128524011	128582107	18	0.6556	SMALL-GAIN	FOCAL	2	"IRF5,KCP"
TCGA.AG.A01W.01A	7	128593818	128638006	11	0.6675	SMALL-GAIN	FOCAL	1	TNPO3
TCGA.AA.A00N.01A	7	128610160	128694658	20	0.5743	SMALL-GAIN	FOCAL	1	TNPO3
TCGA.AG.A00C.01A	7	128801450	128807567	7	0.4599	SMALL-GAIN	FOCAL	1	TSPAN33
TCGA.AG.A01W.01A	7	128887334	129201698	21	0.4199	SMALL-GAIN	FOCAL	3	"AHCYL2,SMKR1,STRIP2"
TCGA.AA.A00N.01A	7	129008264	129044887	8	0.5658	SMALL-GAIN	FOCAL	1	AHCYL2
TCGA.AG.3909.01A	7	129091414	129104411	13	0.5654	SMALL-GAIN	FOCAL	1	STRIP2
TCGA.AG.A00C.01A	7	129098508	129297168	12	0.5518	SMALL-GAIN	FOCAL	3	"NRF1,SMKR1,STRIP2"
TCGA.AA.A00N.01A	7	129330199	129760540	31	0.4745	SMALL-GAIN	FOCAL	4	"KLHDC10,NRF1,UBE2H,ZC3HC1"
TCGA.CK.5914.01A	7	129330199	129841640	47	0.5296	SMALL-GAIN	FOCAL	5	"KLHDC10,NRF1,TMEM209,UBE2H,ZC3HC1"
TCGA.AG.A01W.01A	7	129476063	129602556	15	0.4447	SMALL-GAIN	FOCAL	1	UBE2H
TCGA.AG.A01W.01A	7	129825932	129927825	18	0.4939	SMALL-GAIN	FOCAL	3	"CPA2,SSMEM1,TMEM209"
TCGA.AG.A00C.01A	7	130051954	130147494	16	0.4264	SMALL-GAIN	FOCAL	3	"CEP41,COPG2,MEST"
TCGA.AA.A00F.01A	7	130135167	130369958	17	0.6473	SMALL-GAIN	FOCAL	3	"COPG2,MEST,TSGA13"
TCGA.AG.3909.01A	7	130295776	130337652	5	0.5777	SMALL-GAIN	FOCAL	1	COPG2
TCGA.AG.A00C.01A	7	130347786	130365723	8	0.4369	SMALL-GAIN	FOCAL	2	"COPG2,TSGA13"
TCGA.CK.5914.01A	7	130561458	130827609	3	0.4407	SMALL-GAIN	FOCAL	1	MKLN1
TCGA.AA.A00Q.01A	7	131817761	133989483	68	0.4348	SMALL-GAIN	FOCAL	5	"CHCHD3,EXOC4,LRGUK,PLXNA4,SLC35B4"
TCGA.AG.3909.01A	7	131844193	131883197	13	0.4634	SMALL-GAIN	FOCAL	1	PLXNA4
TCGA.AY.4070	7	133388055	133590936	60	0.3974	SMALL-GAIN	FOCAL	1	EXOC4
TCGA.AA.3941	7	133463784	133874830	113	0.4534	SMALL-GAIN	FOCAL	2	"EXOC4,LRGUK"
TCGA.AA.3982	7	133529647	134480586	369	0.4285	SMALL-GAIN	FOCAL	8	"AKR1B1,AKR1B10,AKR1B15,BPGM,CALD1,EXOC4,LRGUK,SLC35B4"
TCGA.CK.5914.01A	7	133821729	133979563	20	0.4799	SMALL-GAIN	FOCAL	2	"LRGUK,SLC35B4"
TCGA.G5.6235	7	133870642	133970443	34	0.5564	SMALL-GAIN	FOCAL	1	LRGUK
TCGA.AF.4110	7	133870642	133970749	35	0.6211	SMALL-GAIN	FOCAL	1	LRGUK
TCGA.DC.4745	7	133870642	133978166	36	0.6519	SMALL-GAIN	FOCAL	2	"LRGUK,SLC35B4"
TCGA.AA.3941	7	133978166	134298483	148	0.5995	SMALL-GAIN	FOCAL	4	"AKR1B1,AKR1B10,AKR1B15,SLC35B4"
TCGA.AA.A00Q.01A	7	134215363	134718883	32	0.4795	SMALL-GAIN	FOCAL	5	"AGBL3,AKR1B10,AKR1B15,BPGM,CALD1"
TCGA.AG.3906.01A	7	134223647	134264239	12	0.4584	SMALL-GAIN	FOCAL	2	"AKR1B10,AKR1B15"
TCGA.AA.3941	7	134330358	134489405	82	0.5072	SMALL-GAIN	FOCAL	2	"BPGM,CALD1"
TCGA.AA.3941	7	134544742	134681305	38	0.5143	SMALL-GAIN	FOCAL	2	"AGBL3,CALD1"
TCGA.D5.6539	7	134648448	134827048	36	0.617	SMALL-GAIN	FOCAL	3	"AGBL3,C7orf49,CALD1"
TCGA.AA.3941	7	134696879	134720557	8	0.3811	SMALL-GAIN	FOCAL	1	AGBL3
TCGA.CK.5914.01A	7	134701756	134851416	15	0.6307	SMALL-GAIN	FOCAL	3	"AGBL3,C7orf49,TMEM140"
TCGA.AA.A00F.01A	7	134882707	134943136	16	0.6467	SMALL-GAIN	FOCAL	2	"STRA8,WDR91"
TCGA.AG.A00C.01A	7	134916660	134943136	8	0.4258	SMALL-GAIN	FOCAL	1	STRA8
TCGA.AA.A00Q.01A	7	134939814	135377024	53	0.5076	SMALL-GAIN	FOCAL	5	"C7orf73,CNOT4,NUP205,SLC13A4,STRA8"
TCGA.AZ.4684.01A	7	135242607	135433213	64	0.4238	SMALL-GAIN	FOCAL	4	"C7orf73,FAM180A,NUP205,SLC13A4"
TCGA.DY.A1DC	7	135441130	136782818	436	0.4092	SMALL-GAIN	FOCAL	3	"CHRM2,LUZP6,MTPN"
TCGA.AF.6672	7	135545414	137378116	608	0.6746	SMALL-GAIN	FOCAL	5	"CHRM2,DGKI,LUZP6,MTPN,PTN"
TCGA.AA.3941	7	135847685	136038491	85	0.3956	SMALL-GAIN	FOCAL	0	None
TCGA.CI.6621	7	136571150	136913424	113	0.6318	SMALL-GAIN	FOCAL	2	"CHRM2,PTN"
TCGA.AA.A02H.01A	7	136935957	137294218	28	0.5489	SMALL-GAIN	FOCAL	2	"DGKI,PTN"
TCGA.AA.3844	7	137546550	137812368	98	0.4866	SMALL-GAIN	FOCAL	3	"AKR1D1,CREB3L2,LOC100130880"
TCGA.AA.A00A.01A	7	138312043	138433865	18	0.4681	SMALL-GAIN	FOCAL	2	"ATP6V0A4,SVOPL"
TCGA.AA.A010.01A	7	138329423	138341138	3	0.585	SMALL-GAIN	FOCAL	1	SVOPL
TCGA.CK.5914.01A	7	138363651	138601457	43	0.4338	SMALL-GAIN	FOCAL	4	"ATP6V0A4,KIAA1549,SVOPL,TMEM213"
TCGA.AG.4009.01A	7	138824597	138874020	15	0.4321	SMALL-GAIN	FOCAL	1	TTC26
TCGA.CK.5914.01A	7	138943229	139083308	23	0.4535	SMALL-GAIN	FOCAL	4	"C7orf55,C7orf55-LUC7L2,LUC7L2,UBN2"
TCGA.AG.4009.01A	7	138966690	139733986	54	0.4809	SMALL-GAIN	FOCAL	9	"C7orf55,C7orf55-LUC7L2,CLEC2L,HIPK2,KLRG2,LUC7L2,PARP12,TBXAS1,UBN2"
TCGA.CI.6621	7	139979421	140213879	69	0.4264	SMALL-GAIN	FOCAL	3	"MKRN1,RAB19,SLC37A3"
TCGA.AA.A02K.01A	7	140043184	141255221	75	0.489	SMALL-GAIN	FOCAL	10	"ADCK2,AGK,BRAF,DENND2A,MKRN1,MRPS33,NDUFB2,RAB19,SLC37A3,TMEM178B"
TCGA.AG.4009.01A	7	140218431	140287405	15	0.5778	SMALL-GAIN	FOCAL	1	DENND2A
TCGA.AA.A00N.01A	7	140494059	141385241	30	0.6278	SMALL-GAIN	FOCAL	5	"AGK,BRAF,KIAA1147,MRPS33,TMEM178B"
TCGA.AA.A02H.01A	7	141321468	141539096	39	0.4194	SMALL-GAIN	FOCAL	8	"AGK,KIAA1147,PRSS37,SSBP1,TAS2R3,TAS2R4,TAS2R5,WEE2"
TCGA.AG.3906.01A	7	141386318	141420698	6	0.6735	SMALL-GAIN	FOCAL	2	"KIAA1147,WEE2"
TCGA.AA.A010.01A	7	141438916	141631480	17	0.4352	SMALL-GAIN	FOCAL	7	"CLEC5A,OR9A4,PRSS37,SSBP1,TAS2R3,TAS2R4,TAS2R5"
TCGA.AG.A023.01A	7	141643644	141797322	44	0.4897	SMALL-GAIN	FOCAL	3	"CLEC5A,MGAM,TAS2R38"
TCGA.AA.A02H.01A	7	141797322	141957407	10	0.4996	SMALL-GAIN	FOCAL	3	"MGAM,MGAM2,PRSS58"
TCGA.AA.3844	7	142002223	142367112	117	0.6043	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	7	142015152	142159459	15	0.5316	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	7	142181927	142389678	72	0.4584	SMALL-GAIN	FOCAL	1	MTRNR2L6
TCGA.AA.3973	7	142273429	142374071	16	0.5648	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3968	7	142273429	142501803	45	0.6525	SMALL-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3858	7	142273429	142505153	49	0.4491	SMALL-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3684	7	142273429	142507501	50	0.5218	SMALL-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3688	7	142338468	142493128	38	0.4069	SMALL-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AG.3901	7	142339391	142501803	39	0.6594	SMALL-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3692	7	142339391	142503275	41	0.5341	SMALL-GAIN	FOCAL	2	"MTRNR2L6,PRSS1"
TCGA.AA.3860	7	142411526	142493128	15	0.5484	SMALL-GAIN	FOCAL	1	PRSS1
TCGA.AA.3973	7	142411526	142501803	17	0.4528	SMALL-GAIN	FOCAL	1	PRSS1
TCGA.AG.A01W.01A	7	142546252	142710959	21	0.387	SMALL-GAIN	FOCAL	5	"C7orf34,EPHB6,KEL,TRPV5,TRPV6"
TCGA.AG.3909.01A	7	142560945	142583117	25	0.4438	SMALL-GAIN	FOCAL	2	"EPHB6,TRPV6"
TCGA.AA.A00J.01A	7	142573283	142643257	29	0.5731	SMALL-GAIN	FOCAL	4	"C7orf34,KEL,TRPV5,TRPV6"
TCGA.AA.A00J.01A	7	142983022	143057106	40	0.5902	SMALL-GAIN	FOCAL	4	"CASP2,CLCN1,FAM131B,TMEM139"
TCGA.CK.5914.01A	7	143001730	143043615	20	0.452	SMALL-GAIN	FOCAL	2	"CASP2,CLCN1"
TCGA.AG.3906.01A	7	143016801	143036577	13	0.507	SMALL-GAIN	FOCAL	1	CLCN1
TCGA.AG.3909.01A	7	143028593	143055878	16	0.4724	SMALL-GAIN	FOCAL	2	"CLCN1,FAM131B"
TCGA.AG.A016.01A	7	143056375	143400040	27	0.5908	SMALL-GAIN	FOCAL	7	"CTAGE15,EPHA1,FAM131B,TAS2R41,TAS2R60,TCAF2,ZYX"
TCGA.AA.3862.01A	7	143573060	143826188	10	0.5061	SMALL-GAIN	FOCAL	8	"OR2A12,OR2A2,OR2A25,OR2A5,OR2F1,OR2F2,OR6B1,TCAF1"
TCGA.AA.3861.01A	7	143632379	143826188	9	0.5071	SMALL-GAIN	FOCAL	7	"OR2A12,OR2A2,OR2A25,OR2A5,OR2F1,OR2F2,OR6B1"
TCGA.AG.4009.01A	7	144150590	148771428	84	0.3802	SMALL-GAIN	FOCAL	7	"C7orf33,CNTNAP2,CUL1,EZH2,PDIA4,TPK1,ZNF786"
TCGA.AA.A00N.01A	7	146536782	148457398	35	0.6414	SMALL-GAIN	FOCAL	3	"C7orf33,CNTNAP2,CUL1"
TCGA.AY.4070	7	147278871	147688886	162	0.6711	SMALL-GAIN	FOCAL	1	CNTNAP2
TCGA.AA.3941	7	147790369	148266043	213	0.5808	SMALL-GAIN	FOCAL	1	CNTNAP2
TCGA.AA.3982	7	147976769	148628361	200	0.403	SMALL-GAIN	FOCAL	4	"C7orf33,CNTNAP2,CUL1,EZH2"
TCGA.AA.3977	7	148269248	148411821	47	0.5341	SMALL-GAIN	FOCAL	2	"C7orf33,CUL1"
TCGA.AG.3909.01A	7	148504672	148544227	18	0.547	SMALL-GAIN	FOCAL	1	EZH2
TCGA.AG.A01W.01A	7	148583422	149121281	59	0.4632	SMALL-GAIN	FOCAL	7	"PDIA4,ZNF212,ZNF282,ZNF398,ZNF425,ZNF783,ZNF786"
TCGA.AA.A00Q.01A	7	148767473	149152227	27	0.6366	SMALL-GAIN	FOCAL	7	"ZNF212,ZNF282,ZNF398,ZNF425,ZNF777,ZNF783,ZNF786"
TCGA.AG.3906.01A	7	148768907	148875739	12	0.389	SMALL-GAIN	FOCAL	3	"ZNF398,ZNF425,ZNF786"
TCGA.AG.3891.01A	7	148771428	149174618	31	0.4139	SMALL-GAIN	FOCAL	8	"ZNF212,ZNF282,ZNF398,ZNF425,ZNF746,ZNF777,ZNF783,ZNF786"
TCGA.A6.3808.01A	7	148863202	149418433	36	0.4769	SMALL-GAIN	FOCAL	7	"KRBA1,ZNF212,ZNF282,ZNF398,ZNF746,ZNF777,ZNF783"
TCGA.AA.3941	7	148965026	149414423	111	0.6512	SMALL-GAIN	FOCAL	4	"KRBA1,ZNF746,ZNF777,ZNF783"
TCGA.AA.3982	7	149678459	149933705	22	0.528	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	7	150013392	150158139	40	0.572	SMALL-GAIN	FOCAL	7	"ACTR3C,GIMAP8,LRRC61,RARRES2,REPIN1,ZBED6CL,ZNF775"
TCGA.AG.3909.01A	7	150069870	150446816	20	0.6537	SMALL-GAIN	FOCAL	10	"GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,REPIN1,ZNF775"
TCGA.CK.5914.01A	7	150163778	150488566	20	0.4977	SMALL-GAIN	FOCAL	9	"GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,TMEM176B"
TCGA.AA.3982	7	150176106	150245255	25	0.4138	SMALL-GAIN	FOCAL	2	"GIMAP7,GIMAP8"
TCGA.AG.A01W.01A	7	150379780	150450677	32	0.4793	SMALL-GAIN	FOCAL	4	"GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP5"
TCGA.AM.5820	7	150592361	150726919	24	0.531	SMALL-GAIN	FOCAL	4	"ABCB8,ATG9B,KCNH2,NOS3"
TCGA.AG.3906.01A	7	150643933	150656608	10	0.6325	SMALL-GAIN	FOCAL	1	KCNH2
TCGA.AM.5820	7	150782070	150952829	45	0.529	SMALL-GAIN	FOCAL	7	"ABCF2,AGAP3,ASB10,CHPF2,GBX1,IQCA1L,SMARCD3"
TCGA.AG.A00C.01A	7	150813813	151074121	53	0.4253	SMALL-GAIN	FOCAL	8	"ABCF2,AGAP3,ASB10,CHPF2,GBX1,IQCA1L,NUB1,SMARCD3"
TCGA.AG.4009.01A	7	150905086	150915615	7	0.6731	SMALL-GAIN	FOCAL	1	ABCF2
TCGA.AA.A00L.01A	7	150905086	150921845	12	0.4439	SMALL-GAIN	FOCAL	1	ABCF2
TCGA.AG.3909.01A	7	151164151	154782650	162	0.5114	SMALL-GAIN	FOCAL	9	"ACTR3B,DPP6,GALNT11,GALNTL5,KMT2C,PAXIP1,PRKAG2,RHEB,XRCC2"
TCGA.AA.3941	7	151842562	152116713	20	0.4946	SMALL-GAIN	FOCAL	1	KMT2C
TCGA.AA.3509.01A	7	151882582	151970742	27	0.5392	SMALL-GAIN	FOCAL	1	KMT2C
TCGA.AA.3941	7	152661625	152963684	155	0.5537	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	7	152976245	154432314	552	0.4996	SMALL-GAIN	FOCAL	1	DPP6
TCGA.RU.A8FL	7	153886567	156236882	1069	0.5896	SMALL-GAIN	FOCAL	9	"CNPY1,DPP6,EN2,HTR5A,INSIG1,LOC389602,PAXIP1,RBM33,SHH"
TCGA.EI.6508	7	153922853	155882316	880	0.4246	SMALL-GAIN	FOCAL	9	"CNPY1,DPP6,EN2,HTR5A,INSIG1,LOC389602,PAXIP1,RBM33,SHH"
TCGA.AA.3941	7	154713541	154860409	52	0.4603	SMALL-GAIN	FOCAL	1	PAXIP1
TCGA.DC.4745	7	154956998	154983941	26	0.5908	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	7	155301892	156298277	393	0.4379	SMALL-GAIN	FOCAL	4	"CNPY1,LOC389602,RBM33,SHH"
TCGA.CI.6621	7	155312324	155651101	100	0.6654	SMALL-GAIN	FOCAL	3	"CNPY1,RBM33,SHH"
TCGA.AA.A010.01A	7	155499563	155567231	12	0.6537	SMALL-GAIN	FOCAL	1	RBM33
TCGA.AA.A00N.01A	7	156468338	156629445	17	0.6558	SMALL-GAIN	FOCAL	2	"LMBR1,RNF32"
TCGA.AG.3611.01A	7	156468338	157333344	63	0.3908	SMALL-GAIN	FOCAL	7	"DNAJB6,LMBR1,MNX1,NOM1,PTPRN2,RNF32,UBE3C"
TCGA.CK.5914.01A	7	156468952	156742421	19	0.4864	SMALL-GAIN	FOCAL	3	"LMBR1,NOM1,RNF32"
TCGA.AA.A02E.01A	7	156516763	156742763	15	0.4012	SMALL-GAIN	FOCAL	2	"LMBR1,NOM1"
TCGA.AG.3909.01A	7	156589036	156629445	4	0.4653	SMALL-GAIN	FOCAL	1	LMBR1
TCGA.AA.3967.01A	7	156742763	157178184	40	0.6576	SMALL-GAIN	FOCAL	4	"DNAJB6,MNX1,NOM1,UBE3C"
TCGA.AA.A02E.01A	7	156758954	157013330	18	0.3831	SMALL-GAIN	FOCAL	3	"MNX1,NOM1,UBE3C"
TCGA.AA.A00N.01A	7	156962989	157041034	16	0.6429	SMALL-GAIN	FOCAL	1	UBE3C
TCGA.AM.5820	7	157063376	158043422	299	0.3922	SMALL-GAIN	FOCAL	2	"DNAJB6,PTPRN2"
TCGA.AA.3842	7	157128267	159119219	584	0.4167	SMALL-GAIN	FOCAL	6	"DNAJB6,ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AA.3872	7	157535976	159119219	449	0.5071	SMALL-GAIN	FOCAL	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AM.5820	7	158077349	158385583	76	0.3919	SMALL-GAIN	FOCAL	1	PTPRN2
TCGA.DM.A1DB	7	158139850	159119219	272	0.3959	SMALL-GAIN	FOCAL	5	"ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AA.A00N.01A	7	158526819	158565973	16	0.3925	SMALL-GAIN	FOCAL	1	ESYT2
TCGA.AG.3909.01A	7	158526819	158586288	18	0.53	SMALL-GAIN	FOCAL	1	ESYT2
TCGA.AG.A014.01A	7	158723075	158935086	14	0.571	SMALL-GAIN	FOCAL	2	"VIPR2,WDR60"
TCGA.RU.A8FL	7	158889281	159119219	67	0.6426	SMALL-GAIN	FOCAL	1	VIPR2
TCGA.A6.5661	7	158975614	159119219	37	0.6119	SMALL-GAIN	FOCAL	0	None
TCGA.A6.2674	7	159026678	159119219	22	0.3897	SMALL-GAIN	FOCAL	0	None
TCGA.G5.6233	7	159086803	159119219	6	0.4993	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3893	8	164983	211876	16	0.4631	SMALL-GAIN	FOCAL	1	ZNF596
TCGA.4T.AA8H	8	164983	234756	41	0.5461	SMALL-GAIN	FOCAL	1	ZNF596
TCGA.AZ.6598	8	164983	2036732	814	0.4266	SMALL-GAIN	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3811	8	164983	2107933	871	0.409	SMALL-GAIN	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3673	8	164983	2583197	1093	0.5144	SMALL-GAIN	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3558	8	164983	3392554	1668	0.4528	SMALL-GAIN	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AG.3574	8	164983	3676707	1989	0.4563	SMALL-GAIN	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AD.A5EK	8	164983	3732412	2029	0.3898	SMALL-GAIN	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A1DA	8	164983	4026877	2371	0.507	SMALL-GAIN	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.G4.6626	8	164983	4502910	2865	0.4121	SMALL-GAIN	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3502	8	164983	4665648	2983	0.474	SMALL-GAIN	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.D5.5539	8	164983	5594032	3745	0.489	SMALL-GAIN	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A28K	8	164983	5601351	3744	0.4657	SMALL-GAIN	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AH.6549.01A	8	190805	2092539	102	0.4108	SMALL-GAIN	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3850	8	227597	2206485	894	0.41915	SMALL-GAIN	FOCAL	8	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP"
TCGA.A6.5662	8	258689	492898	98	0.6019	SMALL-GAIN	FOCAL	2	"FBXO25,TDRP"
TCGA.A6.5662	8	571610	1284913	294	0.4835	SMALL-GAIN	FOCAL	1	ERICH1
TCGA.G4.6303	8	1244373	1514748	139	0.6566	SMALL-GAIN	FOCAL	1	DLGAP2
TCGA.AA.A00N.01A	8	1998834	2046647	17	0.5213	SMALL-GAIN	FOCAL	1	MYOM2
TCGA.AA.A010.01A	8	1998834	2796055	34	0.5668	SMALL-GAIN	FOCAL	2	"CSMD1,MYOM2"
TCGA.A6.3808.01A	8	2000224	6588191	128	0.4891	SMALL-GAIN	FOCAL	5	"AGPAT5,ANGPT2,CSMD1,MCPH1,MYOM2"
TCGA.AG.A00C.01A	8	2056498	2077067	8	0.5723	SMALL-GAIN	FOCAL	1	MYOM2
TCGA.CK.5914.01A	8	2091255	2909957	23	0.5971	SMALL-GAIN	FOCAL	2	"CSMD1,MYOM2"
TCGA.AA.3941	8	2220775	2750761	274	0.5272	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3673	8	2595683	4657294	1885	0.4608	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.AA.3941	8	2772310	2803336	27	0.6162	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.AA.3941	8	2813082	3264421	313	0.5983	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.AA.A010.01A	8	2876012	3071971	23	0.6137	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.CK.5914.01A	8	3076740	4277426	27	0.3887	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.AA.3850	8	3290515	3321661	25	0.43095	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.AA.3850	8	3433135	3454991	24	0.52135	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.DM.A1HB	8	3582747	3587231	15	0.6516	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.AA.3850	8	3612665	3643630	33	0.39835	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.AD.A5EK	8	3734897	6743728	2654	0.379	SMALL-GAIN	FOCAL	6	"AGPAT5,ANGPT2,CSMD1,DEFB1,MCPH1,XKR5"
TCGA.AA.3966	8	3787059	3836453	74	0.4671	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.A6.5662	8	4739607	4824004	82	0.4323	SMALL-GAIN	FOCAL	1	CSMD1
TCGA.DM.A1HB	8	5573345	5601351	14	0.4592	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	5920479	6020682	99	0.5377	SMALL-GAIN	FOCAL	0	None
TCGA.NH.A6GC	8	6249693	6289420	28	0.4222	SMALL-GAIN	FOCAL	1	MCPH1
TCGA.AA.A00Q.01A	8	6478948	6735268	11	0.4198	SMALL-GAIN	FOCAL	4	"AGPAT5,DEFB1,MCPH1,XKR5"
TCGA.AG.A008.01A	8	7332464	7693959	14	0.4722	SMALL-GAIN	FOCAL	10	"DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,PRR23D1,PRR23D2"
TCGA.AG.A00C.01A	8	7346907	7682632	7	0.5914	SMALL-GAIN	FOCAL	6	"DEFB105A,DEFB105B,DEFB107A,DEFB107B,PRR23D1,PRR23D2"
TCGA.AZ.5403	8	8087143	8396736	180	0.5275	SMALL-GAIN	FOCAL	1	SGK223
TCGA.AA.A010.01A	8	11188624	11615750	21	0.4473	SMALL-GAIN	FOCAL	4	"BLK,FAM167A,GATA4,SLC35G5"
TCGA.AM.5820	8	11282265	11332781	47	0.4383	SMALL-GAIN	FOCAL	1	FAM167A
TCGA.AD.A5EK	8	12556041	13599176	606	0.4569	SMALL-GAIN	FOCAL	4	"C8orf48,DLC1,KIAA1456,LONRF1"
TCGA.AA.A010.01A	8	12612178	15519643	45	0.4589	SMALL-GAIN	FOCAL	6	"C8orf48,DLC1,KIAA1456,LONRF1,SGCZ,TUSC3"
TCGA.AA.3941	8	12813430	13235840	254	0.6174	SMALL-GAIN	FOCAL	2	"DLC1,KIAA1456"
TCGA.AD.A5EK	8	13610493	15935927	1214	0.4149	SMALL-GAIN	FOCAL	2	"SGCZ,TUSC3"
TCGA.AA.3941	8	16543001	16798008	115	0.3885	SMALL-GAIN	FOCAL	0	None
TCGA.EI.6512	8	17755667	17763594	15	0.4341	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4684.01A	8	17793086	17867019	21	0.4714	SMALL-GAIN	FOCAL	1	PCM1
TCGA.AA.3941	8	18042766	18097079	22	0.5689	SMALL-GAIN	FOCAL	1	NAT1
TCGA.AA.3941	8	18213735	18255875	26	0.5988	SMALL-GAIN	FOCAL	1	NAT2
TCGA.AA.3941	8	18265153	18482409	138	0.5534	SMALL-GAIN	FOCAL	1	PSD3
TCGA.AA.3941	8	18499595	18632275	64	0.6003	SMALL-GAIN	FOCAL	1	PSD3
TCGA.AA.3941	8	18657631	19076174	250	0.6767	SMALL-GAIN	FOCAL	1	PSD3
TCGA.AA.3941	8	19086352	19852947	412	0.6211	SMALL-GAIN	FOCAL	4	"CSGALNACT1,INTS10,LPL,SH2D4A"
TCGA.DM.A1HB	8	19325752	19386770	39	0.6268	SMALL-GAIN	FOCAL	1	CSGALNACT1
TCGA.CK.5914.01A	8	20003224	20054876	15	0.5859	SMALL-GAIN	FOCAL	2	"ATP6V1B2,SLC18A1"
TCGA.AA.3941	8	20051577	21548696	797	0.4979	SMALL-GAIN	FOCAL	2	"ATP6V1B2,LZTS1"
TCGA.AA.A01Q.01A	8	21608063	21890591	8	0.4039	SMALL-GAIN	FOCAL	4	"DOK2,GFRA2,NPM2,XPO7"
TCGA.AG.3906.01A	8	21957164	21998878	20	0.4561	SMALL-GAIN	FOCAL	4	"FAM160B2,HR,NUDT18,REEP4"
TCGA.AG.3891.01A	8	21958067	22005652	25	0.4647	SMALL-GAIN	FOCAL	5	"FAM160B2,HR,LGI3,NUDT18,REEP4"
TCGA.AA.A010.01A	8	22078839	22173741	29	0.4529	SMALL-GAIN	FOCAL	3	"PHYHIP,PIWIL2,POLR3D"
TCGA.AA.A00N.01A	8	22161497	22370814	28	0.4002	SMALL-GAIN	FOCAL	3	"PIWIL2,PPP3CC,SLC39A14"
TCGA.AG.3891.01A	8	22494367	22872160	19	0.6672	SMALL-GAIN	FOCAL	4	"BIN3,EGR3,PEBP4,RHOBTB2"
TCGA.AG.3906.01A	8	22861898	22880137	11	0.548	SMALL-GAIN	FOCAL	2	"RHOBTB2,TNFRSF10B"
TCGA.AG.A00C.01A	8	23106675	23167144	14	0.4399	SMALL-GAIN	FOCAL	3	"CHMP7,LOXL2,R3HCC1"
TCGA.AA.A00N.01A	8	23159509	23290408	12	0.5904	SMALL-GAIN	FOCAL	2	"ENTPD4,LOXL2"
TCGA.AA.A010.01A	8	23386499	24167347	15	0.6487	SMALL-GAIN	FOCAL	5	"ADAM28,NKX2-6,NKX3-1,SLC25A37,STC1"
TCGA.AA.3850	8	23532981	23624724	54	0.42265	SMALL-GAIN	FOCAL	2	"NKX2-6,NKX3-1"
TCGA.AA.A00N.01A	8	24151588	24184011	10	0.43	SMALL-GAIN	FOCAL	1	ADAM28
TCGA.CK.5914.01A	8	24151588	24262712	37	0.4818	SMALL-GAIN	FOCAL	2	"ADAM28,ADAMDEC1"
TCGA.AZ.4684.01A	8	24177687	24324305	37	0.5811	SMALL-GAIN	FOCAL	3	"ADAM28,ADAM7,ADAMDEC1"
TCGA.CK.5914.01A	8	24333890	24364921	15	0.5886	SMALL-GAIN	FOCAL	1	ADAM7
TCGA.AA.A00N.01A	8	24333890	24771290	17	0.5284	SMALL-GAIN	FOCAL	2	"ADAM7,NEFM"
TCGA.AA.3941	8	24710849	24915091	99	0.4137	SMALL-GAIN	FOCAL	2	"NEFL,NEFM"
TCGA.AA.A010.01A	8	24771290	25268668	61	0.3955	SMALL-GAIN	FOCAL	3	"DOCK5,NEFL,NEFM"
TCGA.AA.3941	8	24919138	25558544	230	0.6513	SMALL-GAIN	FOCAL	4	"CDCA2,DOCK5,GNRH1,KCTD9"
TCGA.AA.A00N.01A	8	25337379	25765942	17	0.4887	SMALL-GAIN	FOCAL	2	"CDCA2,EBF2"
TCGA.AA.3941	8	25640192	26002517	169	0.5608	SMALL-GAIN	FOCAL	1	EBF2
TCGA.AA.A010.01A	8	25708062	26211942	18	0.4283	SMALL-GAIN	FOCAL	2	"EBF2,PPP2R2A"
TCGA.CM.5860	8	26170974	26455799	108	0.4552	SMALL-GAIN	FOCAL	4	"BNIP3L,DPYSL2,PNMA2,PPP2R2A"
TCGA.AA.3941	8	26516037	27036723	244	0.4002	SMALL-GAIN	FOCAL	1	ADRA1A
TCGA.AA.A010.01A	8	27629944	28208963	65	0.5636	SMALL-GAIN	FOCAL	8	"CCDC25,ELP3,ESCO2,NUGGC,PBK,PNOC,SCARA5,ZNF395"
TCGA.CK.5914.01A	8	27729403	27904977	17	0.6136	SMALL-GAIN	FOCAL	2	"NUGGC,SCARA5"
TCGA.AA.3854	8	28227331	29137319	213	0.4745	SMALL-GAIN	FOCAL	7	"EXTL3,FBXO16,FZD3,HMBOX1,INTS9,KIF13B,ZNF395"
TCGA.D5.6533	8	28273387	28394700	43	0.6	SMALL-GAIN	FOCAL	2	"FBXO16,FZD3"
TCGA.AA.A00N.01A	8	28378138	29194541	78	0.4554	SMALL-GAIN	FOCAL	6	"DUSP4,EXTL3,FZD3,HMBOX1,INTS9,KIF13B"
TCGA.AA.A010.01A	8	28965602	29207381	40	0.4452	SMALL-GAIN	FOCAL	2	"DUSP4,KIF13B"
TCGA.DY.A0XA	8	29174778	29619599	185	0.4915	SMALL-GAIN	FOCAL	1	DUSP4
TCGA.D5.6533	8	29249446	29472983	113	0.6107	SMALL-GAIN	FOCAL	0	None
TCGA.CA.6715	8	29255583	30282657	370	0.4855	SMALL-GAIN	FOCAL	5	"DCTN6,LEPROTL1,MBOAT4,RBPMS,SARAF"
TCGA.D5.6930	8	29920824	29924718	4	0.6259	SMALL-GAIN	FOCAL	1	SARAF
TCGA.AG.3891.01A	8	29921325	30623696	50	0.5437	SMALL-GAIN	FOCAL	9	"DCTN6,GSR,GTF2E2,LEPROTL1,MBOAT4,RBPMS,SARAF,SMIM18,UBXN8"
TCGA.AA.A00N.01A	8	29989472	30472078	25	0.649	SMALL-GAIN	FOCAL	5	"DCTN6,GTF2E2,LEPROTL1,MBOAT4,RBPMS"
TCGA.DY.A0XA	8	30165167	30450113	94	0.5498	SMALL-GAIN	FOCAL	2	"GTF2E2,RBPMS"
TCGA.CA.6715	8	30406982	31912249	451	0.4695	SMALL-GAIN	FOCAL	10	"GSR,GTF2E2,NRG1,PPP2CB,PURG,RBPMS,SMIM18,TEX15,UBXN8,WRN"
TCGA.D5.6923	8	30598423	31630450	307	0.4461	SMALL-GAIN	FOCAL	6	"NRG1,PPP2CB,PURG,TEX15,UBXN8,WRN"
TCGA.DY.A0XA	8	30718596	30756163	17	0.4194	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	8	30945240	30982384	9	0.566	SMALL-GAIN	FOCAL	1	WRN
TCGA.AG.4009.01A	8	31012093	32621295	20	0.502	SMALL-GAIN	FOCAL	2	"NRG1,WRN"
TCGA.AA.3854	8	31029435	31249220	79	0.5266	SMALL-GAIN	FOCAL	1	WRN
TCGA.AA.A00N.01A	8	31030498	32474277	7	0.4199	SMALL-GAIN	FOCAL	2	"NRG1,WRN"
TCGA.CM.5860	8	31791620	33524781	635	0.4891	SMALL-GAIN	FOCAL	6	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2"
TCGA.A6.2671	8	32019287	32250028	122	0.5966	SMALL-GAIN	FOCAL	1	NRG1
TCGA.AA.3941	8	32125345	32518758	198	0.4023	SMALL-GAIN	FOCAL	1	NRG1
TCGA.AG.A026	8	32147739	32831707	291	0.4034	SMALL-GAIN	FOCAL	1	NRG1
TCGA.AA.3941	8	32526677	32533170	6	0.4661	SMALL-GAIN	FOCAL	1	NRG1
TCGA.AA.3941	8	32540659	32620466	41	0.4481	SMALL-GAIN	FOCAL	1	NRG1
TCGA.CM.5862	8	33274398	33497650	44	0.4721	SMALL-GAIN	FOCAL	5	"DUSP26,FUT10,MAK16,RNF122,TTI2"
TCGA.AA.A00D.01A	8	33345834	33356650	8	0.6675	SMALL-GAIN	FOCAL	2	"MAK16,TTI2"
TCGA.AG.3891.01A	8	33345834	33451002	21	0.5584	SMALL-GAIN	FOCAL	4	"DUSP26,MAK16,RNF122,TTI2"
TCGA.AG.A00C.01A	8	33345834	33454772	22	0.4079	SMALL-GAIN	FOCAL	4	"DUSP26,MAK16,RNF122,TTI2"
TCGA.A6.6648	8	33393049	33417130	6	0.4436	SMALL-GAIN	FOCAL	1	RNF122
TCGA.AA.3941	8	33524178	33779933	54	0.4679	SMALL-GAIN	FOCAL	0	None
TCGA.CM.5860	8	33748816	33891598	28	0.5546	SMALL-GAIN	FOCAL	0	None
TCGA.A6.2671	8	33764920	34023428	68	0.5647	SMALL-GAIN	FOCAL	0	None
TCGA.A6.5662	8	34154840	34734033	165	0.4316	SMALL-GAIN	FOCAL	0	None
TCGA.CM.5860	8	34580937	34607378	7	0.5271	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01S	8	34611274	35099764	131	0.44005	SMALL-GAIN	FOCAL	1	UNC5D
TCGA.CM.5860	8	34998135	36331444	248	0.465	SMALL-GAIN	FOCAL	1	UNC5D
TCGA.CM.5862	8	35056596	37472910	576	0.583	SMALL-GAIN	FOCAL	2	"KCNU1,UNC5D"
TCGA.AZ.4308	8	35127963	37834311	607	0.4523	SMALL-GAIN	FOCAL	10	"ADGRA2,ADRB3,BRF2,ERLIN2,GOT1L1,KCNU1,PROSC,RAB11FIP1,UNC5D,ZNF703"
TCGA.DY.A0XA	8	35150108	35475552	83	0.4811	SMALL-GAIN	FOCAL	1	UNC5D
TCGA.AA.3660	8	35196416	36077079	170	0.432	SMALL-GAIN	FOCAL	1	UNC5D
TCGA.CM.6169	8	35231703	35395852	32	0.6675	SMALL-GAIN	FOCAL	1	UNC5D
TCGA.AA.3549	8	35356473	35831045	110	0.3992	SMALL-GAIN	FOCAL	1	UNC5D
TCGA.CK.5914.01A	8	35453055	37554636	44	0.616	SMALL-GAIN	FOCAL	3	"KCNU1,UNC5D,ZNF703"
TCGA.AZ.6600	8	35518820	35688500	47	0.5637	SMALL-GAIN	FOCAL	1	UNC5D
TCGA.DY.A0XA	8	35621389	35996433	45	0.6039	SMALL-GAIN	FOCAL	1	UNC5D
TCGA.DM.A28H	8	35784315	36046360	27	0.4974	SMALL-GAIN	FOCAL	0	None
TCGA.CM.6169	8	35972540	36181074	41	0.6397	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A28H	8	36480300	36985890	127	0.4411	SMALL-GAIN	FOCAL	1	KCNU1
TCGA.AA.3496	8	36754129	36938316	63	0.5944	SMALL-GAIN	FOCAL	1	KCNU1
TCGA.DY.A0XA	8	36827101	37268940	199	0.4749	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3870	8	36926080	37485543	215	0.4141	SMALL-GAIN	FOCAL	0	None
TCGA.D5.6923	8	37547776	37834311	22	0.4742	SMALL-GAIN	FOCAL	8	"ADGRA2,ADRB3,BRF2,ERLIN2,GOT1L1,PROSC,RAB11FIP1,ZNF703"
TCGA.AA.A010.01A	8	37595400	37622996	12	0.4514	SMALL-GAIN	FOCAL	2	"ERLIN2,PROSC"
TCGA.AG.4009.01A	8	37595400	37623759	12	0.4394	SMALL-GAIN	FOCAL	2	"ERLIN2,PROSC"
TCGA.DM.A28H	8	37675666	37805391	11	0.6289	SMALL-GAIN	FOCAL	4	"ADGRA2,BRF2,GOT1L1,RAB11FIP1"
TCGA.AA.3982	8	37834311	38043757	19	0.6641	SMALL-GAIN	FOCAL	5	"ASH2L,BAG4,EIF4EBP1,LSM1,STAR"
TCGA.AG.A00C.01A	8	37964490	37974119	6	0.605	SMALL-GAIN	FOCAL	1	ASH2L
TCGA.A6.2677	8	37971941	38031344	17	0.397	SMALL-GAIN	FOCAL	3	"ASH2L,LSM1,STAR"
TCGA.AG.A00C.01A	8	38021157	38146874	38	0.3898	SMALL-GAIN	FOCAL	5	"BAG4,DDHD2,LSM1,PPAPDC1B,WHSC1L1"
TCGA.AG.4009.01A	8	38033718	38067504	6	0.4174	SMALL-GAIN	FOCAL	2	"BAG4,LSM1"
TCGA.AG.4009.01A	8	38125857	38705410	69	0.3965	SMALL-GAIN	FOCAL	6	"C8orf86,FGFR1,LETM2,PPAPDC1B,TACC1,WHSC1L1"
TCGA.D5.6926	8	38160042	38410556	42	0.5952	SMALL-GAIN	FOCAL	4	"C8orf86,FGFR1,LETM2,WHSC1L1"
TCGA.AA.A00Q.01A	8	38265672	38314833	9	0.6605	SMALL-GAIN	FOCAL	2	"FGFR1,LETM2"
TCGA.AG.3909.01A	8	38271099	38810137	41	0.4475	SMALL-GAIN	FOCAL	4	"C8orf86,FGFR1,PLEKHA2,TACC1"
TCGA.AZ.6607	8	38368705	39429070	185	0.5593	SMALL-GAIN	FOCAL	7	"ADAM32,ADAM9,C8orf86,HTRA4,PLEKHA2,TACC1,TM2D2"
TCGA.AD.6888	8	38419150	39085455	141	0.4394	SMALL-GAIN	FOCAL	6	"ADAM32,ADAM9,HTRA4,PLEKHA2,TACC1,TM2D2"
TCGA.AG.4021	8	38799056	39120663	53	0.4879	SMALL-GAIN	FOCAL	5	"ADAM32,ADAM9,HTRA4,PLEKHA2,TM2D2"
TCGA.AG.A023.01A	8	38853720	39142225	43	0.486	SMALL-GAIN	FOCAL	3	"ADAM32,ADAM9,TM2D2"
TCGA.AA.A00Q.01A	8	38874688	38959374	16	0.5069	SMALL-GAIN	FOCAL	1	ADAM9
TCGA.AZ.4684.01A	8	38884155	39679072	66	0.4682	SMALL-GAIN	FOCAL	4	"ADAM18,ADAM2,ADAM32,ADAM9"
TCGA.F5.6864	8	38911809	39120663	33	0.5105	SMALL-GAIN	FOCAL	2	"ADAM32,ADAM9"
TCGA.DM.A28M.01A	8	39079075	39646125	44	0.4465	SMALL-GAIN	FOCAL	3	"ADAM18,ADAM2,ADAM32"
TCGA.CM.6166	8	39082735	39577962	64	0.491	SMALL-GAIN	FOCAL	2	"ADAM18,ADAM32"
TCGA.AG.3893	8	39399230	39671985	60	0.478	SMALL-GAIN	FOCAL	2	"ADAM18,ADAM2"
TCGA.AA.3941	8	39577962	40085155	205	0.6316	SMALL-GAIN	FOCAL	5	"ADAM18,ADAM2,C8orf4,IDO1,IDO2"
TCGA.AA.3811	8	39721937	39975002	120	0.4076	SMALL-GAIN	FOCAL	2	"IDO1,IDO2"
TCGA.AG.3909.01A	8	39771384	40625116	26	0.5891	SMALL-GAIN	FOCAL	4	"C8orf4,IDO1,IDO2,ZMAT4"
TCGA.AG.3893	8	39821036	40235886	216	0.6083	SMALL-GAIN	FOCAL	2	"C8orf4,IDO2"
TCGA.AG.4009.01A	8	39821087	39847208	6	0.4094	SMALL-GAIN	FOCAL	1	IDO2
TCGA.AD.6888	8	39955251	40386788	239	0.431	SMALL-GAIN	FOCAL	1	C8orf4
TCGA.A6.A56B	8	39969005	40798804	379	0.4716	SMALL-GAIN	FOCAL	2	"C8orf4,ZMAT4"
TCGA.CM.5349	8	39974091	40092072	60	0.4534	SMALL-GAIN	FOCAL	1	C8orf4
TCGA.AA.3941	8	40110258	40164464	21	0.6513	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	40179207	40283206	63	0.5456	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01Z	8	40192909	40965148	311	0.4952	SMALL-GAIN	FOCAL	1	ZMAT4
TCGA.AG.3893	8	40238574	40586674	177	0.6034	SMALL-GAIN	FOCAL	1	ZMAT4
TCGA.CM.6166	8	40283140	40342900	42	0.3991	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	40314724	40501015	105	0.4615	SMALL-GAIN	FOCAL	1	ZMAT4
TCGA.CK.4948.01B	8	40389649	40625116	5	0.3916	SMALL-GAIN	FOCAL	1	ZMAT4
TCGA.A6.5662	8	40491837	41885119	443	0.5364	SMALL-GAIN	FOCAL	8	"AGPAT6,ANK1,GINS4,GOLGA7,KAT6A,NKX6-3,SFRP1,ZMAT4"
TCGA.G4.6299	8	40793532	42008185	351	0.4725	SMALL-GAIN	FOCAL	7	"AGPAT6,ANK1,GINS4,GOLGA7,KAT6A,NKX6-3,SFRP1"
TCGA.F4.6805	8	41218424	41272363	18	0.6089	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A0XA	8	41260894	42202039	264	0.5052	SMALL-GAIN	FOCAL	10	"AGPAT6,ANK1,AP3M2,GINS4,GOLGA7,IKBKB,KAT6A,NKX6-3,PLAT,POLB"
TCGA.AG.3906.01A	8	41399284	41476162	11	0.6049	SMALL-GAIN	FOCAL	2	"AGPAT6,GINS4"
TCGA.AF.2690	8	41746091	42116391	76	0.6448	SMALL-GAIN	FOCAL	4	"ANK1,AP3M2,KAT6A,PLAT"
TCGA.AG.3909.01A	8	41804069	41905845	12	0.4859	SMALL-GAIN	FOCAL	1	KAT6A
TCGA.AD.6888	8	42002817	42180715	45	0.4527	SMALL-GAIN	FOCAL	3	"AP3M2,IKBKB,PLAT"
TCGA.AG.3909.01A	8	42033459	42173701	21	0.5538	SMALL-GAIN	FOCAL	2	"IKBKB,PLAT"
TCGA.AA.A00N.01A	8	42033459	42174187	22	0.5592	SMALL-GAIN	FOCAL	2	"IKBKB,PLAT"
TCGA.AG.3906.01A	8	42323247	43054490	73	0.3786	SMALL-GAIN	FOCAL	10	"CHRNA6,CHRNB3,FNTA,HGSNAT,HOOK3,POMK,RNF170,SLC20A2,SMIM19,THAP1"
TCGA.AA.3858	8	42429936	43306145	89	0.5031	SMALL-GAIN	FOCAL	9	"CHRNA6,CHRNB3,FNTA,HGSNAT,HOOK3,POMK,POTEA,RNF170,THAP1"
TCGA.AG.3891.01A	8	42552629	42940286	50	0.5665	SMALL-GAIN	FOCAL	6	"CHRNA6,CHRNB3,FNTA,HOOK3,RNF170,THAP1"
TCGA.AA.A00Q.01A	8	42711290	43173552	45	0.5681	SMALL-GAIN	FOCAL	6	"FNTA,HGSNAT,HOOK3,POMK,POTEA,RNF170"
TCGA.AF.3913	8	42725562	43145297	33	0.4011	SMALL-GAIN	FOCAL	5	"FNTA,HGSNAT,HOOK3,POMK,RNF170"
TCGA.AA.A00L.01A	8	42819403	42868461	13	0.6206	SMALL-GAIN	FOCAL	1	HOOK3
TCGA.G4.6307	8	42858298	43679529	59	0.6497	SMALL-GAIN	FOCAL	5	"FNTA,HGSNAT,HOOK3,POMK,POTEA"
TCGA.AA.3941	8	43079016	43420831	33	0.4083	SMALL-GAIN	FOCAL	1	POTEA
TCGA.AG.4021	8	43123347	43265149	16	0.4052	SMALL-GAIN	FOCAL	1	POTEA
TCGA.A6.5656	8	43242956	52706131	1186	0.4367	SMALL-GAIN	FOCAL	10	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,PXDNL,SNAI2,SNTG1,SPIDR,UBE2V2"
TCGA.AA.3872	8	43762680	47325113	28	0.5793	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3811	8	43778913	47354617	28	0.4536	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	43778913	47354617	28	0.5576	SMALL-GAIN	FOCAL	0	None
TCGA.CA.5797	8	47015255	51737986	851	0.5228	SMALL-GAIN	FOCAL	9	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,SNAI2,SNTG1,SPIDR,UBE2V2"
TCGA.AA.3867	8	47397088	48543756	136	0.6707	SMALL-GAIN	FOCAL	1	SPIDR
TCGA.QG.A5Z1	8	47397088	49666434	303	0.4118	SMALL-GAIN	FOCAL	6	"CEBPD,EFCAB1,MCM4,PRKDC,SPIDR,UBE2V2"
TCGA.AA.3941	8	47817532	48322001	57	0.397	SMALL-GAIN	FOCAL	1	SPIDR
TCGA.AH.6549.01A	8	48308934	49647584	117	0.4561	SMALL-GAIN	FOCAL	6	"CEBPD,EFCAB1,MCM4,PRKDC,SPIDR,UBE2V2"
TCGA.AA.A010.01A	8	48352858	48614246	6	0.5455	SMALL-GAIN	FOCAL	1	SPIDR
TCGA.AG.A01W.01A	8	48912286	48968207	26	0.5369	SMALL-GAIN	FOCAL	1	UBE2V2
TCGA.AA.3941	8	49555295	49844376	69	0.6746	SMALL-GAIN	FOCAL	2	"EFCAB1,SNAI2"
TCGA.QG.A5Z1	8	50649994	51077232	119	0.4291	SMALL-GAIN	FOCAL	1	SNTG1
TCGA.CK.5914.01A	8	51314753	52258361	19	0.4238	SMALL-GAIN	FOCAL	2	"PXDNL,SNTG1"
TCGA.QG.A5Z1	8	51348820	51612640	66	0.5697	SMALL-GAIN	FOCAL	1	SNTG1
TCGA.CM.6169	8	52310187	52379290	24	0.3878	SMALL-GAIN	FOCAL	1	PXDNL
TCGA.AA.A00N.01A	8	52359514	54656097	66	0.5975	SMALL-GAIN	FOCAL	8	"ATP6V1H,FAM150A,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,ST18"
TCGA.CM.6172	8	52516570	52598768	38	0.5299	SMALL-GAIN	FOCAL	1	PXDNL
TCGA.SS.A7HO	8	53220938	53413457	81	0.5895	SMALL-GAIN	FOCAL	1	ST18
TCGA.AH.6547	8	53449547	53669477	26	0.5453	SMALL-GAIN	FOCAL	2	"FAM150A,RB1CC1"
TCGA.AZ.4684.01A	8	53536281	54708170	29	0.5854	SMALL-GAIN	FOCAL	4	"ATP6V1H,NPBWR1,OPRK1,RB1CC1"
TCGA.A6.5656	8	54393059	55656581	337	0.4834	SMALL-GAIN	FOCAL	7	"ATP6V1H,LYPLA1,MRPL15,RGS20,RP1,SOX17,TCEA1"
TCGA.AA.A01Z	8	54457241	54494459	13	0.5741	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01Z	8	54528759	54919890	72	0.513	SMALL-GAIN	FOCAL	3	"ATP6V1H,RGS20,TCEA1"
TCGA.AG.3891.01A	8	54859175	55060019	25	0.4597	SMALL-GAIN	FOCAL	4	"LYPLA1,MRPL15,RGS20,TCEA1"
TCGA.A6.5666	8	54962394	56804188	614	0.6656	SMALL-GAIN	FOCAL	8	"LYN,LYPLA1,MRPL15,RP1,SOX17,TGS1,TMEM68,XKR4"
TCGA.AA.A01Z	8	55089183	55138996	12	0.4651	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01Z	8	56062920	56438821	172	0.466	SMALL-GAIN	FOCAL	1	XKR4
TCGA.AA.A01Z	8	57084124	57576172	153	0.5111	SMALL-GAIN	FOCAL	4	"CHCHD7,PENK,PLAG1,SDR16C5"
TCGA.AA.3941	8	58224011	59700319	525	0.3881	SMALL-GAIN	FOCAL	5	"CYP7A1,FAM110B,NSMAF,SDCBP,UBXN2B"
TCGA.AA.3941	8	61010263	62844513	630	0.484	SMALL-GAIN	FOCAL	5	"ASPH,CA8,CHD7,CLVS1,RAB2A"
TCGA.AG.4009.01A	8	61121294	61193556	8	0.3885	SMALL-GAIN	FOCAL	1	CA8
TCGA.AA.3850	8	61811763	61966065	51	0.54875	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	62872336	64628119	503	0.5227	SMALL-GAIN	FOCAL	4	"GGH,NKAIN3,TTPA,YTHDF3"
TCGA.AA.3941	8	63737798	63802824	28	0.6139	SMALL-GAIN	FOCAL	1	NKAIN3
TCGA.AA.3941	8	63827865	64276114	108	0.5389	SMALL-GAIN	FOCAL	4	"GGH,NKAIN3,TTPA,YTHDF3"
TCGA.AA.3941	8	64612642	64625291	9	0.6417	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	65347905	66324292	211	0.461	SMALL-GAIN	FOCAL	2	"BHLHE22,CYP7B1"
TCGA.AA.A00N.01A	8	66605832	67066240	31	0.5622	SMALL-GAIN	FOCAL	4	"DNAJC5B,MTFR1,PDE7A,TRIM55"
TCGA.AG.3891.01A	8	67771635	67955423	16	0.6073	SMALL-GAIN	FOCAL	6	"C8orf44-SGK3,COPS5,MCMDC2,PPP1R42,SGK3,TCF24"
TCGA.AA.A00N.01A	8	67998973	68066212	15	0.4101	SMALL-GAIN	FOCAL	1	CSPP1
TCGA.AG.3906.01A	8	68061981	68092033	11	0.4984	SMALL-GAIN	FOCAL	1	CSPP1
TCGA.AG.A008.01A	8	68200148	68214585	6	0.469	SMALL-GAIN	FOCAL	1	ARFGEF1
TCGA.AG.3594	8	68293316	70544432	808	0.6235	SMALL-GAIN	FOCAL	4	"C8orf34,CPA6,PREX2,SULF1"
TCGA.AA.3982	8	70089436	70273196	51	0.3934	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	70281059	70425740	56	0.6699	SMALL-GAIN	FOCAL	1	SULF1
TCGA.AA.A00N.01A	8	70570659	70673951	9	0.6111	SMALL-GAIN	FOCAL	2	"SLCO5A1,SULF1"
TCGA.AA.3982	8	71676192	72953157	466	0.5252	SMALL-GAIN	FOCAL	3	"EYA1,MSC,TRPA1"
TCGA.AA.3979	8	72695218	72748607	45	0.5047	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	72960521	73860144	354	0.3856	SMALL-GAIN	FOCAL	2	"KCNB2,TRPA1"
TCGA.AG.3906.01A	8	73983999	74233125	11	0.4888	SMALL-GAIN	FOCAL	4	"C8orf89,RDH10,RPL7,SBSPON"
TCGA.AA.3841	8	74048540	74204807	63	0.5343	SMALL-GAIN	FOCAL	2	"C8orf89,RPL7"
TCGA.AG.3906.01A	8	74650431	74938949	16	0.5876	SMALL-GAIN	FOCAL	5	"LY96,STAU2,TCEB1,TMEM70,UBE2W"
TCGA.AG.3731	8	78643618	80239646	365	0.6246	SMALL-GAIN	FOCAL	3	"IL7,PKIA,ZC2HC1A"
TCGA.AA.3941	8	80431799	80972450	149	0.4526	SMALL-GAIN	FOCAL	4	"HEY1,MRPS28,STMN2,TPD52"
TCGA.AG.3909.01A	8	81430987	81905291	16	0.3946	SMALL-GAIN	FOCAL	3	"PAG1,ZBTB10,ZNF704"
TCGA.AA.3941	8	81582103	82274070	202	0.4676	SMALL-GAIN	FOCAL	3	"FABP5,PAG1,ZNF704"
TCGA.A6.6652	8	83198956	83471193	74	0.4979	SMALL-GAIN	FOCAL	0	None
TCGA.AY.A8YK	8	84101492	84751765	141	0.482	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	85806902	86956924	127	0.5862	SMALL-GAIN	FOCAL	8	"C8orf59,CA1,CA13,CA2,CA3,E2F5,LRRCC1,RALYL"
TCGA.AA.A00F.01A	8	86162941	86193419	6	0.3923	SMALL-GAIN	FOCAL	1	CA13
TCGA.AG.A00C.01A	8	86162941	86193419	6	0.5453	SMALL-GAIN	FOCAL	1	CA13
TCGA.AA.A00N.01A	8	86240752	86376231	15	0.5171	SMALL-GAIN	FOCAL	3	"CA1,CA2,CA3"
TCGA.AA.3982	8	87008552	87635423	187	0.6482	SMALL-GAIN	FOCAL	7	"ATP6V0D2,CNGB3,CPNE3,PSKH2,RMDN1,SLC7A13,WWP1"
TCGA.AA.A00N.01A	8	87081614	87241820	13	0.5373	SMALL-GAIN	FOCAL	3	"ATP6V0D2,PSKH2,SLC7A13"
TCGA.AG.A00C.01A	8	87386237	87447668	11	0.3954	SMALL-GAIN	FOCAL	1	WWP1
TCGA.AA.A00N.01A	8	87454811	87479010	7	0.5458	SMALL-GAIN	FOCAL	1	WWP1
TCGA.AA.A00N.01A	8	90936738	90976601	10	0.5936	SMALL-GAIN	FOCAL	2	"NBN,OSGIN2"
TCGA.CK.5914.01A	8	91929669	92082473	16	0.4829	SMALL-GAIN	FOCAL	4	"C8orf88,NECAB1,OTUD6B,TMEM55A"
TCGA.AG.3909.01A	8	92114842	93029407	28	0.4106	SMALL-GAIN	FOCAL	3	"LRRC69,RUNX1T1,SLC26A7"
TCGA.AA.3509.01A	8	92972453	95177941	60	0.4073	SMALL-GAIN	FOCAL	8	"C8orf87,CDH17,FAM92A1,PDP1,RBM12B,RUNX1T1,TMEM67,TRIQK"
TCGA.AA.3982	8	94385559	94489995	30	0.5023	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	8	94767106	94821971	22	0.5325	SMALL-GAIN	FOCAL	1	TMEM67
TCGA.AG.3909.01A	8	95158107	95206789	13	0.5824	SMALL-GAIN	FOCAL	1	CDH17
TCGA.AG.3909.01A	8	95272353	95565558	39	0.6168	SMALL-GAIN	FOCAL	4	"FSBP,GEM,KIAA1429,RAD54B"
TCGA.AA.A00N.01A	8	95384346	95565558	40	0.5551	SMALL-GAIN	FOCAL	3	"FSBP,KIAA1429,RAD54B"
TCGA.AG.A016.01A	8	95507919	95511630	3	0.4837	SMALL-GAIN	FOCAL	1	KIAA1429
TCGA.AG.A00C.01A	8	95653510	95677168	7	0.6483	SMALL-GAIN	FOCAL	1	ESRP1
TCGA.AG.3909.01A	8	95674450	95801937	26	0.556	SMALL-GAIN	FOCAL	2	"DPY19L4,ESRP1"
TCGA.AA.3695	8	95690578	95789619	26	0.654	SMALL-GAIN	FOCAL	2	"DPY19L4,ESRP1"
TCGA.AG.3611.01A	8	95780596	95792529	4	0.4184	SMALL-GAIN	FOCAL	1	DPY19L4
TCGA.AG.3891.01A	8	95892309	96275862	28	0.5812	SMALL-GAIN	FOCAL	6	"C8orf37,CCNE2,INTS8,NDUFAF6,PLEKHF2,TP53INP1"
TCGA.AA.3841	8	96249485	96306958	21	0.6337	SMALL-GAIN	FOCAL	1	C8orf37
TCGA.AA.A00D.01A	8	96281215	98155196	39	0.6181	SMALL-GAIN	FOCAL	7	"C8orf37,CPQ,GDF6,MTERF3,PTDSS1,SDC2,UQCRB"
TCGA.AA.3982	8	96488157	97671896	495	0.6066	SMALL-GAIN	FOCAL	6	"CPQ,GDF6,MTERF3,PTDSS1,SDC2,UQCRB"
TCGA.AA.3941	8	96680130	96773933	64	0.4467	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	96947826	97662362	270	0.4535	SMALL-GAIN	FOCAL	6	"CPQ,GDF6,MTERF3,PTDSS1,SDC2,UQCRB"
TCGA.AG.3909.01A	8	97243220	97258558	8	0.4153	SMALL-GAIN	FOCAL	2	"MTERF3,UQCRB"
TCGA.AA.A00N.01A	8	97299198	99039616	57	0.4382	SMALL-GAIN	FOCAL	7	"CPQ,LAPTM4B,MATN2,MTDH,PTDSS1,SDC2,TSPYL5"
TCGA.AA.A00L.01A	8	98656713	98731227	10	0.5012	SMALL-GAIN	FOCAL	1	MTDH
TCGA.AA.3939.01A	8	98703172	99054841	33	0.579	SMALL-GAIN	FOCAL	4	"LAPTM4B,MATN2,MTDH,RPL30"
TCGA.AG.3611.01A	8	98725838	98817564	5	0.4485	SMALL-GAIN	FOCAL	2	"LAPTM4B,MTDH"
TCGA.AA.A00L.01A	8	99101342	99162665	21	0.4022	SMALL-GAIN	FOCAL	3	"ERICH5,HRSP12,POP1"
TCGA.CK.5914.01A	8	99146668	99234657	17	0.4501	SMALL-GAIN	FOCAL	2	"NIPAL2,POP1"
TCGA.AA.3941	8	99585433	100331778	49	0.623	SMALL-GAIN	FOCAL	3	"OSR2,STK3,VPS13B"
TCGA.AG.3909.01A	8	100108528	100155194	10	0.517	SMALL-GAIN	FOCAL	1	VPS13B
TCGA.AA.A00D.01A	8	100147774	100887629	54	0.5775	SMALL-GAIN	FOCAL	1	VPS13B
TCGA.AG.3909.01A	8	100205077	100396399	4	0.3878	SMALL-GAIN	FOCAL	1	VPS13B
TCGA.AG.3909.01A	8	100403738	100844620	34	0.6753	SMALL-GAIN	FOCAL	1	VPS13B
TCGA.AG.3594	8	100758001	101556736	196	0.4062	SMALL-GAIN	FOCAL	8	"ANKRD46,COX6C,FBXO43,POLR2K,RGS22,RNF19A,SPAG1,VPS13B"
TCGA.AA.3941	8	100848479	101095140	40	0.4548	SMALL-GAIN	FOCAL	3	"COX6C,RGS22,VPS13B"
TCGA.AA.A00N.01A	8	100974570	101014408	9	0.4123	SMALL-GAIN	FOCAL	1	RGS22
TCGA.AG.3909.01A	8	100974570	101105606	24	0.5878	SMALL-GAIN	FOCAL	1	RGS22
TCGA.AA.A00N.01A	8	101075632	101092315	5	0.484	SMALL-GAIN	FOCAL	1	RGS22
TCGA.AG.A00C.01A	8	101105606	101177990	13	0.5611	SMALL-GAIN	FOCAL	4	"FBXO43,POLR2K,RGS22,SPAG1"
TCGA.AG.3906.01A	8	101177990	101243344	12	0.4168	SMALL-GAIN	FOCAL	1	SPAG1
TCGA.AA.A00Q.01A	8	101190003	101251430	13	0.524	SMALL-GAIN	FOCAL	1	SPAG1
TCGA.AG.3891.01A	8	101195532	101252653	13	0.5269	SMALL-GAIN	FOCAL	1	SPAG1
TCGA.AG.3909.01A	8	101245608	101648118	27	0.5705	SMALL-GAIN	FOCAL	4	"ANKRD46,RNF19A,SNX31,SPAG1"
TCGA.AA.A00D.01A	8	101252653	101661443	26	0.5727	SMALL-GAIN	FOCAL	4	"ANKRD46,RNF19A,SNX31,SPAG1"
TCGA.A6.2677	8	101275033	101760348	168	0.6313	SMALL-GAIN	FOCAL	4	"ANKRD46,PABPC1,RNF19A,SNX31"
TCGA.AG.4009.01A	8	101586042	101648118	12	0.3957	SMALL-GAIN	FOCAL	1	SNX31
TCGA.AA.3831	8	101586132	102253401	227	0.3894	SMALL-GAIN	FOCAL	4	"PABPC1,SNX31,YWHAZ,ZNF706"
TCGA.AG.3891.01A	8	101629797	101730294	16	0.5977	SMALL-GAIN	FOCAL	2	"PABPC1,SNX31"
TCGA.AA.A00Q.01A	8	101716476	101721310	5	0.6692	SMALL-GAIN	FOCAL	1	PABPC1
TCGA.AG.3906.01A	8	101716476	102213817	18	0.4929	SMALL-GAIN	FOCAL	3	"PABPC1,YWHAZ,ZNF706"
TCGA.AG.A00C.01A	8	101717772	102213817	16	0.4734	SMALL-GAIN	FOCAL	3	"PABPC1,YWHAZ,ZNF706"
TCGA.AA.A00F.01A	8	101721310	102213817	14	0.4096	SMALL-GAIN	FOCAL	3	"PABPC1,YWHAZ,ZNF706"
TCGA.AA.3941	8	102170102	102756689	255	0.6099	SMALL-GAIN	FOCAL	3	"GRHL2,NCALD,ZNF706"
TCGA.AZ.6606	8	102260426	102398443	57	0.6469	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	102754921	103057161	111	0.4356	SMALL-GAIN	FOCAL	1	NCALD
TCGA.AA.3941	8	103058600	103142447	32	0.6695	SMALL-GAIN	FOCAL	1	NCALD
TCGA.AA.3982	8	103152598	103219362	35	0.4964	SMALL-GAIN	FOCAL	1	RRM2B
TCGA.AG.3909.01A	8	103273324	103662361	50	0.5977	SMALL-GAIN	FOCAL	3	"KLF10,ODF1,UBR5"
TCGA.AG.A01W.01A	8	103294134	103313507	7	0.3967	SMALL-GAIN	FOCAL	1	UBR5
TCGA.AG.A01L.01A	8	103305793	103316234	9	0.5045	SMALL-GAIN	FOCAL	1	UBR5
TCGA.AA.3509.01A	8	103335509	104432455	58	0.487	SMALL-GAIN	FOCAL	10	"ATP6V1C1,AZIN1,BAALC,CTHRC1,DCAF13,FZD6,KLF10,ODF1,SLC25A32,UBR5"
TCGA.AG.A01W.01A	8	103345844	103351397	5	0.3994	SMALL-GAIN	FOCAL	1	UBR5
TCGA.AG.A01W.01A	8	103368789	103370821	3	0.5221	SMALL-GAIN	FOCAL	1	UBR5
TCGA.AG.A01W.01A	8	103392683	103641820	20	0.511	SMALL-GAIN	FOCAL	2	"ODF1,UBR5"
TCGA.AG.3906.01A	8	103563924	103855727	14	0.4897	SMALL-GAIN	FOCAL	3	"AZIN1,KLF10,ODF1"
TCGA.AA.A00N.01A	8	104054530	104240185	12	0.3948	SMALL-GAIN	FOCAL	2	"ATP6V1C1,BAALC"
TCGA.AA.3872	8	104067908	104529425	181	0.5324	SMALL-GAIN	FOCAL	7	"ATP6V1C1,BAALC,CTHRC1,DCAF13,FZD6,RIMS2,SLC25A32"
TCGA.AG.3909.01A	8	104075173	104343522	12	0.6216	SMALL-GAIN	FOCAL	3	"ATP6V1C1,BAALC,FZD6"
TCGA.AA.3941	8	104365115	104435536	26	0.6469	SMALL-GAIN	FOCAL	3	"CTHRC1,DCAF13,SLC25A32"
TCGA.DY.A1DC	8	106360529	106405366	15	0.6092	SMALL-GAIN	FOCAL	1	ZFPM2
TCGA.AA.A00L.01A	8	106813248	107762987	16	0.4856	SMALL-GAIN	FOCAL	2	"OXR1,ZFPM2"
TCGA.AH.6549.01A	8	107371756	107781703	18	0.4623	SMALL-GAIN	FOCAL	2	"ABRA,OXR1"
TCGA.AA.A00L.01A	8	109214077	109498728	23	0.5582	SMALL-GAIN	FOCAL	2	"EIF3E,EMC2"
TCGA.AG.3726	8	109425191	110367186	239	0.463	SMALL-GAIN	FOCAL	5	"EMC2,ENY2,NUDCD1,TMEM74,TRHR"
TCGA.AA.A00N.01A	8	110131240	110396231	22	0.5984	SMALL-GAIN	FOCAL	4	"ENY2,NUDCD1,PKHD1L1,TRHR"
TCGA.AG.A01W.01A	8	110417470	110537621	51	0.5109	SMALL-GAIN	FOCAL	1	PKHD1L1
TCGA.AA.3811	8	110612999	110691428	30	0.4228	SMALL-GAIN	FOCAL	1	SYBU
TCGA.AA.3867	8	110984071	116848488	1344	0.5347	SMALL-GAIN	FOCAL	3	"CSMD3,KCNV1,TRPS1"
TCGA.DY.A1DC	8	113959626	115731929	389	0.6625	SMALL-GAIN	FOCAL	1	CSMD3
TCGA.AA.3956	8	114982552	116255152	362	0.6466	SMALL-GAIN	FOCAL	0	None
TCGA.A6.5656	8	115007176	117430377	640	0.4575	SMALL-GAIN	FOCAL	1	TRPS1
TCGA.QG.A5Z1	8	115063597	115498998	92	0.5347	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3594	8	115690650	115814575	39	0.4043	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	8	115753219	116253682	178	0.642	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	8	116280830	116695111	102	0.6697	SMALL-GAIN	FOCAL	1	TRPS1
TCGA.AY.A8YK	8	116402260	116693812	81	0.4919	SMALL-GAIN	FOCAL	1	TRPS1
TCGA.AA.3982	8	117440178	117924442	154	0.6712	SMALL-GAIN	FOCAL	3	"EIF3H,RAD21,UTP23"
TCGA.EI.6883	8	117440178	118294139	286	0.3884	SMALL-GAIN	FOCAL	5	"AARD,EIF3H,RAD21,SLC30A8,UTP23"
TCGA.A6.5656	8	117732099	117960213	80	0.4839	SMALL-GAIN	FOCAL	4	"AARD,EIF3H,RAD21,UTP23"
TCGA.AA.A010.01A	8	118159164	118849292	22	0.3807	SMALL-GAIN	FOCAL	3	"EXT1,MED30,SLC30A8"
TCGA.AA.3982	8	119152918	119309328	75	0.47	SMALL-GAIN	FOCAL	1	SAMD12
TCGA.AA.3982	8	119326041	119492981	86	0.6402	SMALL-GAIN	FOCAL	1	SAMD12
TCGA.AA.3982	8	119540603	119862664	117	0.5119	SMALL-GAIN	FOCAL	1	SAMD12
TCGA.AA.3982	8	119892215	119946559	17	0.6084	SMALL-GAIN	FOCAL	1	TNFRSF11B
TCGA.A6.A56B	8	119973829	120334253	131	0.6375	SMALL-GAIN	FOCAL	2	"COLEC10,MAL2"
TCGA.AG.A01W.01A	8	120667561	120874734	33	0.4095	SMALL-GAIN	FOCAL	2	"DSCC1,TAF2"
TCGA.AG.A00C.01A	8	120843843	120865238	10	0.572	SMALL-GAIN	FOCAL	2	"DSCC1,TAF2"
TCGA.AA.3850	8	120857168	121102540	94	0.47815	SMALL-GAIN	FOCAL	2	"DEPTOR,DSCC1"
TCGA.AA.A00D.01A	8	120942005	124027655	95	0.6075	SMALL-GAIN	FOCAL	8	"COL14A1,DEPTOR,DERL1,HAS2,MRPL13,MTBP,SNTB1,ZHX2"
TCGA.AG.A01W.01A	8	121082929	121600088	78	0.4786	SMALL-GAIN	FOCAL	4	"COL14A1,MRPL13,MTBP,SNTB1"
TCGA.CK.5914.01A	8	121458632	124084952	41	0.6705	SMALL-GAIN	FOCAL	6	"DERL1,HAS2,MTBP,SNTB1,TBC1D31,ZHX2"
TCGA.AA.3982	8	122297003	123039949	257	0.6231	SMALL-GAIN	FOCAL	1	HAS2
TCGA.A6.2677	8	122683439	122963214	103	0.6479	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3955	8	122802071	123039949	78	0.4226	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	123050853	123556647	152	0.5477	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	123565599	123805750	95	0.5804	SMALL-GAIN	FOCAL	1	ZHX2
TCGA.AA.A00F.01A	8	124206224	124251240	8	0.4145	SMALL-GAIN	FOCAL	3	"C8orf76,FAM83A,ZHX1-C8orf76"
TCGA.AG.3909.01A	8	124338083	124373732	18	0.5538	SMALL-GAIN	FOCAL	1	ATAD2
TCGA.AA.3941	8	124724689	125175205	173	0.4411	SMALL-GAIN	FOCAL	3	"ANXA13,FAM91A1,FER1L6"
TCGA.AG.A00C.01A	8	124786266	124797832	10	0.4256	SMALL-GAIN	FOCAL	1	FAM91A1
TCGA.CK.5914.01A	8	124798698	124821095	10	0.5462	SMALL-GAIN	FOCAL	1	FAM91A1
TCGA.AG.A01W.01A	8	124855444	124870985	14	0.6263	SMALL-GAIN	FOCAL	1	FER1L6
TCGA.AA.A00N.01A	8	125079926	125342912	20	0.6759	SMALL-GAIN	FOCAL	2	"FER1L6,TMEM65"
TCGA.CK.5914.01A	8	125565201	125740063	14	0.6729	SMALL-GAIN	FOCAL	1	MTSS1
TCGA.EI.6883	8	125578634	126013133	214	0.3919	SMALL-GAIN	FOCAL	3	"MTSS1,SQLE,ZNF572"
TCGA.AA.3941	8	125758625	126095867	148	0.6395	SMALL-GAIN	FOCAL	3	"KIAA0196,SQLE,ZNF572"
TCGA.AA.A010.01A	8	126095913	126378971	7	0.4577	SMALL-GAIN	FOCAL	2	"KIAA0196,NSMCE2"
TCGA.AA.3982	8	126782047	127904859	430	0.6767	SMALL-GAIN	FOCAL	1	FAM84B
TCGA.AA.3872	8	126789899	128050512	494	0.5188	SMALL-GAIN	FOCAL	1	FAM84B
TCGA.A6.2677	8	127043579	129487892	990	0.6453	SMALL-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.A6.3807	8	127253028	130197647	1226	0.4815	SMALL-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.AG.3727	8	127308156	129102799	785	0.4692	SMALL-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.AD.6899	8	127312416	128932713	675	0.4378	SMALL-GAIN	FOCAL	3	"FAM84B,MYC,POU5F1B"
TCGA.AA.3982	8	128026127	128062581	19	0.4364	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	128087903	128603605	219	0.6465	SMALL-GAIN	FOCAL	1	POU5F1B
TCGA.AA.3516	8	128193605	128333258	58	0.4693	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3875	8	128431693	128856907	189	0.473	SMALL-GAIN	FOCAL	1	MYC
TCGA.AG.3909.01A	8	129061341	131164916	41	0.5992	SMALL-GAIN	FOCAL	3	"ASAP1,FAM49B,GSDMC"
TCGA.AA.3941	8	129148523	129186265	27	0.6425	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	129181366	129660896	225	0.4688	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3496	8	129190543	131245465	699	0.4432	SMALL-GAIN	FOCAL	3	"ASAP1,FAM49B,GSDMC"
TCGA.AA.3982	8	129686632	130673708	339	0.4728	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	130639539	130829036	70	0.4593	SMALL-GAIN	FOCAL	1	GSDMC
TCGA.AA.3872	8	130727015	132207341	553	0.4806	SMALL-GAIN	FOCAL	4	"ADCY8,ASAP1,FAM49B,GSDMC"
TCGA.CK.5914.01A	8	130762209	133022989	88	0.6198	SMALL-GAIN	FOCAL	5	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC"
TCGA.AG.3726	8	130828983	131789468	333	0.389	SMALL-GAIN	FOCAL	2	"ASAP1,FAM49B"
TCGA.AA.3850	8	130837061	131178830	69	0.44645	SMALL-GAIN	FOCAL	2	"ASAP1,FAM49B"
TCGA.AA.A00N.01A	8	130858984	131414081	37	0.4119	SMALL-GAIN	FOCAL	2	"ASAP1,FAM49B"
TCGA.AA.3941	8	131130593	131229179	27	0.5148	SMALL-GAIN	FOCAL	1	ASAP1
TCGA.AA.3941	8	131256677	131828285	273	0.4976	SMALL-GAIN	FOCAL	2	"ADCY8,ASAP1"
TCGA.AA.3982	8	131878479	132954929	396	0.423	SMALL-GAIN	FOCAL	2	"ADCY8,EFR3A"
TCGA.AA.3872	8	132230062	132925631	245	0.3916	SMALL-GAIN	FOCAL	1	EFR3A
TCGA.AA.3872	8	132947785	133813473	379	0.4998	SMALL-GAIN	FOCAL	7	"EFR3A,HHLA1,KCNQ3,LRRC6,OC90,PHF20L1,TMEM71"
TCGA.AA.3941	8	133028857	133777118	351	0.4314	SMALL-GAIN	FOCAL	5	"HHLA1,KCNQ3,LRRC6,OC90,TMEM71"
TCGA.AA.3509.01A	8	133044097	133771004	61	0.494	SMALL-GAIN	FOCAL	5	"HHLA1,KCNQ3,LRRC6,OC90,TMEM71"
TCGA.AA.3982	8	133122293	133139754	22	0.4633	SMALL-GAIN	FOCAL	1	KCNQ3
TCGA.AG.3594	8	133596997	134082782	200	0.3932	SMALL-GAIN	FOCAL	5	"LRRC6,PHF20L1,SLA,TG,TMEM71"
TCGA.AG.3909.01A	8	133829083	134232814	69	0.6382	SMALL-GAIN	FOCAL	4	"PHF20L1,SLA,TG,WISP1"
TCGA.AA.3872	8	133830342	134145511	188	0.6003	SMALL-GAIN	FOCAL	3	"PHF20L1,SLA,TG"
TCGA.AA.3811	8	133845826	135116638	695	0.4288	SMALL-GAIN	FOCAL	6	"NDRG1,PHF20L1,SLA,ST3GAL1,TG,WISP1"
TCGA.AA.A01Q.01A	8	133879179	133909854	13	0.5769	SMALL-GAIN	FOCAL	1	TG
TCGA.AA.3872	8	134158550	137142911	1381	0.5315	SMALL-GAIN	FOCAL	5	"KHDRBS3,NDRG1,ST3GAL1,WISP1,ZFAT"
TCGA.AG.A00C.01A	8	134237586	134260043	6	0.5446	SMALL-GAIN	FOCAL	2	"NDRG1,WISP1"
TCGA.AG.3726	8	134339915	134679174	206	0.4034	SMALL-GAIN	FOCAL	1	ST3GAL1
TCGA.AA.3941	8	135789217	136292125	184	0.3827	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	136009493	138379964	899	0.6506	SMALL-GAIN	FOCAL	1	KHDRBS3
TCGA.DM.A1D6	8	136116963	137562030	569	0.3953	SMALL-GAIN	FOCAL	1	KHDRBS3
TCGA.AA.3941	8	136417979	136474845	21	0.6493	SMALL-GAIN	FOCAL	1	KHDRBS3
TCGA.AA.3941	8	136483700	136857212	123	0.5685	SMALL-GAIN	FOCAL	1	KHDRBS3
TCGA.AA.3941	8	137013446	137033778	20	0.4306	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	137113905	137138444	13	0.6327	SMALL-GAIN	FOCAL	0	None
TCGA.DC.4745	8	138099205	139788555	833	0.4045	SMALL-GAIN	FOCAL	2	"COL22A1,FAM135B"
TCGA.AA.3982	8	138693984	138770155	31	0.6355	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	8	138776767	138849523	29	0.526	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	139670983	140066844	215	0.6557	SMALL-GAIN	FOCAL	1	COL22A1
TCGA.AA.3982	8	140131834	140297252	91	0.632	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	8	140259419	140602615	229	0.6018	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	8	141669566	142146704	32	0.4408	SMALL-GAIN	FOCAL	2	"DENND3,PTK2"
TCGA.AA.3494	8	142198595	143189910	318	0.4618	SMALL-GAIN	FOCAL	5	"DENND3,GPR20,MROH5,PTP4A3,SLC45A4"
TCGA.AG.A01W.01A	8	142257318	142290696	8	0.4947	SMALL-GAIN	FOCAL	1	SLC45A4
TCGA.AG.4009.01A	8	143921791	143998979	17	0.5786	SMALL-GAIN	FOCAL	3	"CYP11B1,CYP11B2,GML"
TCGA.AG.A01W.01A	8	144592813	144769834	42	0.6098	SMALL-GAIN	FOCAL	10	"EEF1D,GSDMD,MROH6,NAPRT,PYCRL,TIGD5,TSTA3,ZC3H3,ZNF623,ZNF707"
TCGA.AG.3891.01A	8	144803128	145008749	41	0.5713	SMALL-GAIN	FOCAL	7	"EPPK1,FAM83H,MAPK15,NRBP2,PLEC,PUF60,SCRIB"
TCGA.AF.3914.01A	8	145223171	145277960	8	0.6632	SMALL-GAIN	FOCAL	1	MROH1
TCGA.AF.2690	8	145801187	146293413	81	0.514	SMALL-GAIN	FOCAL	10	"ARHGAP39,C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.4008	8	145978034	146293413	65	0.6049	SMALL-GAIN	FOCAL	9	"C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.3488	8	146065172	146105146	15	0.4424	SMALL-GAIN	FOCAL	3	"COMMD5,ZNF250,ZNF7"
TCGA.AA.A010.01A	8	146076027	146171369	8	0.4466	SMALL-GAIN	FOCAL	3	"COMMD5,ZNF16,ZNF250"
TCGA.AA.A02W.01A	8	146112160	146279416	9	0.6168	SMALL-GAIN	FOCAL	3	"C8orf33,ZNF16,ZNF250"
TCGA.AA.3956	8	146203411	146293413	13	0.4649	SMALL-GAIN	FOCAL	1	C8orf33
TCGA.AA.3660	8	146233839	146293413	9	0.5743	SMALL-GAIN	FOCAL	1	C8orf33
TCGA.AA.A010.01A	9	14815	916715	74	0.4767	SMALL-GAIN	FOCAL	7	"C9orf66,CBWD1,DMRT1,DOCK8,FOXD4,KANK1,WASH1"
TCGA.AA.A01Q.01A	9	117671	439193	41	0.4183	SMALL-GAIN	FOCAL	4	"C9orf66,CBWD1,DOCK8,FOXD4"
TCGA.AF.2690	9	192128	1598093	1001	0.4214	SMALL-GAIN	FOCAL	6	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.AG.3909.01A	9	286409	989958	65	0.4012	SMALL-GAIN	FOCAL	4	"DMRT1,DMRT3,DOCK8,KANK1"
TCGA.AG.3594	9	1293353	4212600	1929	0.3923	SMALL-GAIN	FOCAL	6	"GLIS3,KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.A6.2671	9	1742581	2131989	259	0.3996	SMALL-GAIN	FOCAL	1	SMARCA2
TCGA.AG.3909.01A	9	2039454	2192620	33	0.3934	SMALL-GAIN	FOCAL	1	SMARCA2
TCGA.CK.5914.01A	9	2073172	2191225	25	0.6433	SMALL-GAIN	FOCAL	1	SMARCA2
TCGA.A6.2671	9	3861265	3902717	29	0.4346	SMALL-GAIN	FOCAL	1	GLIS3
TCGA.AA.A01Z	9	4212346	4228549	17	0.6324	SMALL-GAIN	FOCAL	1	GLIS3
TCGA.AG.3891.01A	9	4565972	4573869	4	0.5336	SMALL-GAIN	FOCAL	1	SLC1A1
TCGA.AG.A00C.01A	9	4625286	4666135	7	0.4159	SMALL-GAIN	FOCAL	2	"PPAPDC2,SPATA6L"
TCGA.CK.5914.01A	9	4697059	5021987	21	0.542	SMALL-GAIN	FOCAL	4	"AK3,CDC37L1,JAK2,RCL1"
TCGA.AG.A00C.01A	9	5029735	5126284	19	0.4855	SMALL-GAIN	FOCAL	1	JAK2
TCGA.AA.A00D.01A	9	5050669	5126634	18	0.5777	SMALL-GAIN	FOCAL	1	JAK2
TCGA.AA.A00N.01A	9	5231473	5361711	9	0.4468	SMALL-GAIN	FOCAL	4	"INSL4,PLGRKT,RLN1,RLN2"
TCGA.AA.A00N.01A	9	5522474	5812842	40	0.609	SMALL-GAIN	FOCAL	3	"ERMP1,PDCD1LG2,RIC1"
TCGA.AA.A00N.01A	9	5892426	6610172	63	0.5435	SMALL-GAIN	FOCAL	7	"GLDC,IL33,KIAA2026,MLANA,RANBP6,TPD52L3,UHRF2"
TCGA.AG.A01Y	9	6132620	6901007	259	0.4766	SMALL-GAIN	FOCAL	5	"GLDC,IL33,KDM4C,TPD52L3,UHRF2"
TCGA.AA.A00F.01A	9	6602066	6887922	13	0.4059	SMALL-GAIN	FOCAL	2	"GLDC,KDM4C"
TCGA.AG.A00C.01A	9	6620153	6814579	6	0.5987	SMALL-GAIN	FOCAL	2	"GLDC,KDM4C"
TCGA.AA.A01C.01A	9	6849480	7799410	20	0.4537	SMALL-GAIN	FOCAL	2	"KDM4C,TMEM261"
TCGA.CK.5914.01A	9	6879935	7798504	21	0.5895	SMALL-GAIN	FOCAL	2	"KDM4C,TMEM261"
TCGA.AG.3909.01A	9	6887922	14179656	112	0.3888	SMALL-GAIN	FOCAL	7	"KDM4C,LURAP1L,MPDZ,NFIB,PTPRD,TMEM261,TYRP1"
TCGA.DC.6158	9	6899148	6942145	31	0.5213	SMALL-GAIN	FOCAL	1	KDM4C
TCGA.EI.6508	9	6996630	7007045	10	0.6365	SMALL-GAIN	FOCAL	1	KDM4C
TCGA.AA.3509.01A	9	8317819	14179656	101	0.5456	SMALL-GAIN	FOCAL	5	"LURAP1L,MPDZ,NFIB,PTPRD,TYRP1"
TCGA.AA.A01C.01A	9	8375909	13143416	56	0.6633	SMALL-GAIN	FOCAL	4	"LURAP1L,MPDZ,PTPRD,TYRP1"
TCGA.AG.3594	9	10657519	12173205	556	0.6689	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01C.01A	9	13247582	15192536	66	0.4938	SMALL-GAIN	FOCAL	6	"CER1,FREM1,MPDZ,NFIB,TTC39B,ZDHHC21"
TCGA.AG.A00C.01A	9	14658750	14674137	4	0.4446	SMALL-GAIN	FOCAL	1	ZDHHC21
TCGA.AG.3909.01A	9	14720069	15210028	52	0.4016	SMALL-GAIN	FOCAL	3	"CER1,FREM1,TTC39B"
TCGA.AG.3906.01A	9	15267843	15459679	9	0.4906	SMALL-GAIN	FOCAL	2	"SNAPC3,TTC39B"
TCGA.AG.A00C.01A	9	15423847	15447055	4	0.5809	SMALL-GAIN	FOCAL	1	SNAPC3
TCGA.AG.3611.01A	9	15459679	15657084	24	0.5017	SMALL-GAIN	FOCAL	3	"CCDC171,PSIP1,SNAPC3"
TCGA.AA.A00A.01A	9	15564008	15724742	14	0.4573	SMALL-GAIN	FOCAL	1	CCDC171
TCGA.AA.A00L.01A	9	15564008	15724742	14	0.4674	SMALL-GAIN	FOCAL	1	CCDC171
TCGA.AA.A00Q.01A	9	15564008	15784468	21	0.5941	SMALL-GAIN	FOCAL	1	CCDC171
TCGA.CK.5914.01A	9	15588356	16685483	35	0.6099	SMALL-GAIN	FOCAL	3	"BNC2,C9orf92,CCDC171"
TCGA.AA.A01C.01A	9	15591317	19049651	95	0.6187	SMALL-GAIN	FOCAL	8	"ADAMTSL1,BNC2,C9orf92,CCDC171,CNTLN,RRAGA,SAXO1,SH3GL2"
TCGA.AA.A00N.01A	9	15729558	16699126	24	0.65	SMALL-GAIN	FOCAL	3	"BNC2,C9orf92,CCDC171"
TCGA.AF.6655	9	16110622	16134424	9	0.4223	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3509.01A	9	17166764	19060079	69	0.5288	SMALL-GAIN	FOCAL	6	"ADAMTSL1,CNTLN,HAUS6,RRAGA,SAXO1,SH3GL2"
TCGA.AG.3909.01A	9	17388106	18753255	37	0.4371	SMALL-GAIN	FOCAL	3	"ADAMTSL1,CNTLN,SH3GL2"
TCGA.AZ.4684.01A	9	17502499	19060079	48	0.3908	SMALL-GAIN	FOCAL	6	"ADAMTSL1,CNTLN,HAUS6,RRAGA,SAXO1,SH3GL2"
TCGA.AA.3713	9	17581660	17648726	48	0.4644	SMALL-GAIN	FOCAL	1	SH3GL2
TCGA.AG.3594	9	18334960	20065112	824	0.422	SMALL-GAIN	FOCAL	9	"ACER2,ADAMTSL1,DENND4C,HAUS6,PLIN2,RPS6,RRAGA,SAXO1,SLC24A2"
TCGA.AA.A010.01A	9	18657587	19409041	83	0.5562	SMALL-GAIN	FOCAL	8	"ACER2,ADAMTSL1,DENND4C,HAUS6,PLIN2,RPS6,RRAGA,SAXO1"
TCGA.AA.3850	9	18977332	19452989	139	0.46335	SMALL-GAIN	FOCAL	7	"ACER2,DENND4C,HAUS6,PLIN2,RPS6,RRAGA,SAXO1"
TCGA.AA.3930.01A	9	19060079	19123350	20	0.4131	SMALL-GAIN	FOCAL	2	"HAUS6,PLIN2"
TCGA.AA.A00L.01A	9	19063459	19096633	12	0.4331	SMALL-GAIN	FOCAL	1	HAUS6
TCGA.AG.3611.01A	9	19070181	19096633	11	0.6198	SMALL-GAIN	FOCAL	1	HAUS6
TCGA.AA.A00F.01A	9	19116265	19126080	6	0.499	SMALL-GAIN	FOCAL	1	PLIN2
TCGA.AA.A00N.01A	9	19290750	19356922	21	0.5287	SMALL-GAIN	FOCAL	1	DENND4C
TCGA.AG.A00C.01A	9	19369798	19434897	11	0.5342	SMALL-GAIN	FOCAL	3	"ACER2,DENND4C,RPS6"
TCGA.AA.A00F.01A	9	19369798	19450439	14	0.4384	SMALL-GAIN	FOCAL	3	"ACER2,DENND4C,RPS6"
TCGA.AA.3930.01A	9	19409041	19450439	6	0.4106	SMALL-GAIN	FOCAL	1	ACER2
TCGA.AA.A01C.01A	9	19516112	20978286	58	0.603	SMALL-GAIN	FOCAL	3	"FOCAD,MLLT3,SLC24A2"
TCGA.AA.A00D.01A	9	21815385	21817987	3	0.579	SMALL-GAIN	FOCAL	1	MTAP
TCGA.DM.A0XD	9	21947956	22125502	58	0.448	SMALL-GAIN	FOCAL	2	"CDKN2A,CDKN2B"
TCGA.DM.A0XD	9	22151464	22175187	13	0.5032	SMALL-GAIN	FOCAL	0	None
TCGA.AF.A56K	9	22868583	23078401	71	0.3803	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DF	9	23902127	24105969	50	0.4622	SMALL-GAIN	FOCAL	0	None
TCGA.CM.6675	9	26453722	27496660	510	0.5381	SMALL-GAIN	FOCAL	7	"CAAP1,EQTN,IFT74,LRRC19,MOB3B,PLAA,TEK"
TCGA.AA.3844	9	26706211	27181760	174	0.4771	SMALL-GAIN	FOCAL	5	"CAAP1,IFT74,LRRC19,PLAA,TEK"
TCGA.AA.A00N.01A	9	26984238	27192435	31	0.6334	SMALL-GAIN	FOCAL	3	"IFT74,LRRC19,TEK"
TCGA.AZ.4684.01A	9	27048114	32418984	57	0.4996	SMALL-GAIN	FOCAL	8	"ACO1,C9orf72,EQTN,IFNK,IFT74,LINGO2,MOB3B,TEK"
TCGA.AA.A00N.01A	9	27228156	27455091	14	0.4169	SMALL-GAIN	FOCAL	3	"EQTN,MOB3B,TEK"
TCGA.AA.A00D.01A	9	27524288	27562329	9	0.4043	SMALL-GAIN	FOCAL	3	"C9orf72,IFNK,MOB3B"
TCGA.AG.3906.01A	9	27550579	27566628	8	0.5511	SMALL-GAIN	FOCAL	1	C9orf72
TCGA.AA.A00N.01A	9	27948817	32526007	40	0.5722	SMALL-GAIN	FOCAL	3	"ACO1,DDX58,LINGO2"
TCGA.AG.3890	9	32880567	32936038	38	0.4198	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00A.01A	9	33001485	33047252	10	0.5062	SMALL-GAIN	FOCAL	3	"APTX,DNAJA1,SMU1"
TCGA.AA.A00D.01A	9	33026431	33047252	9	0.6631	SMALL-GAIN	FOCAL	2	"DNAJA1,SMU1"
TCGA.AG.3906.01A	9	33057558	33258867	22	0.387	SMALL-GAIN	FOCAL	4	"B4GALT1,BAG1,SMU1,SPINK4"
TCGA.AG.3909.01A	9	33068790	33254978	16	0.5465	SMALL-GAIN	FOCAL	4	"B4GALT1,BAG1,SMU1,SPINK4"
TCGA.AG.A00C.01A	9	33254978	33280746	15	0.5646	SMALL-GAIN	FOCAL	2	"BAG1,CHMP5"
TCGA.AG.3909.01A	9	33290482	33395024	29	0.5835	SMALL-GAIN	FOCAL	2	"AQP7,NFX1"
TCGA.AA.A00N.01A	9	33290482	33401148	31	0.6312	SMALL-GAIN	FOCAL	2	"AQP7,NFX1"
TCGA.AA.3982	9	33416870	33454805	16	0.666	SMALL-GAIN	FOCAL	1	AQP3
TCGA.AG.A015.01A	9	33462630	33468790	12	0.5737	SMALL-GAIN	FOCAL	1	NOL6
TCGA.AG.A01L.01A	9	33462981	33558025	19	0.4124	SMALL-GAIN	FOCAL	2	"ANKRD18B,NOL6"
TCGA.AG.3909.01A	9	33558025	34296973	68	0.4921	SMALL-GAIN	FOCAL	7	"ANKRD18B,DCAF12,KIF24,PRSS3,UBAP1,UBAP2,UBE2R2"
TCGA.CK.5914.01A	9	33618166	34269218	64	0.5108	SMALL-GAIN	FOCAL	6	"DCAF12,KIF24,PRSS3,UBAP1,UBAP2,UBE2R2"
TCGA.AG.3611.01A	9	33795494	33971631	29	0.4364	SMALL-GAIN	FOCAL	3	"PRSS3,UBAP2,UBE2R2"
TCGA.AG.A01W.01A	9	33912463	33916937	6	0.6778	SMALL-GAIN	FOCAL	1	UBE2R2
TCGA.AG.A01W.01A	9	33943656	33988728	11	0.4219	SMALL-GAIN	FOCAL	1	UBAP2
TCGA.AG.3906.01A	9	34017026	34124972	9	0.6082	SMALL-GAIN	FOCAL	2	"DCAF12,UBAP2"
TCGA.AA.A010.01A	9	34220831	34380654	26	0.5991	SMALL-GAIN	FOCAL	5	"C9orf24,KIAA1161,KIF24,NUDT2,UBAP1"
TCGA.AG.3906.01A	9	35079393	35107402	22	0.5147	SMALL-GAIN	FOCAL	4	"FAM214B,FANCG,PIGO,STOML2"
TCGA.CK.5914.01A	9	35107402	35555060	42	0.52	SMALL-GAIN	FOCAL	3	"FAM214B,RUSC2,UNC13B"
TCGA.AG.3909.01A	9	35227925	35366866	10	0.467	SMALL-GAIN	FOCAL	1	UNC13B
TCGA.AG.3909.01A	9	35377417	35555060	25	0.5297	SMALL-GAIN	FOCAL	2	"RUSC2,UNC13B"
TCGA.AG.A00C.01A	9	35606783	35682028	29	0.4489	SMALL-GAIN	FOCAL	7	"ARHGEF39,CA9,CCDC107,CD72,SIT1,TESK1,TPM2"
TCGA.AG.3906.01A	9	35615968	35617974	3	0.512	SMALL-GAIN	FOCAL	1	CD72
TCGA.AG.3906.01A	9	35713152	35720761	13	0.4502	SMALL-GAIN	FOCAL	1	TLN1
TCGA.AG.A00C.01A	9	35719999	35751623	31	0.4312	SMALL-GAIN	FOCAL	4	"CREB3,GBA2,RGP1,TLN1"
TCGA.AG.3906.01A	9	35744297	35751623	8	0.4392	SMALL-GAIN	FOCAL	2	"GBA2,RGP1"
TCGA.AG.A01L.01A	9	35748301	35751933	7	0.4979	SMALL-GAIN	FOCAL	2	"GBA2,RGP1"
TCGA.AG.A00C.01A	9	35753616	35853535	36	0.5357	SMALL-GAIN	FOCAL	6	"FAM221B,HINT2,MSMP,NPR2,SPAG8,TMEM8B"
TCGA.AG.3906.01A	9	35805469	35825570	16	0.3934	SMALL-GAIN	FOCAL	4	"FAM221B,HINT2,NPR2,SPAG8"
TCGA.AA.A010.01A	9	36169453	36351063	23	0.5603	SMALL-GAIN	FOCAL	4	"CCIN,CLTA,GNE,RNF38"
TCGA.CK.5914.01A	9	36339693	36390427	12	0.6301	SMALL-GAIN	FOCAL	1	RNF38
TCGA.AA.A00Q.01A	9	36344782	36677108	27	0.4586	SMALL-GAIN	FOCAL	2	"MELK,RNF38"
TCGA.AG.3909.01A	9	36633052	36966519	14	0.5528	SMALL-GAIN	FOCAL	2	"MELK,PAX5"
TCGA.CK.5914.01A	9	36633052	37002644	15	0.56	SMALL-GAIN	FOCAL	2	"MELK,PAX5"
TCGA.AA.3982	9	36845972	37008983	106	0.3977	SMALL-GAIN	FOCAL	1	PAX5
TCGA.CK.5914.01A	9	37186613	37485981	19	0.5284	SMALL-GAIN	FOCAL	4	"GRHPR,POLR1E,ZBTB5,ZCCHC7"
TCGA.AA.A010.01A	9	37422720	37744339	48	0.5224	SMALL-GAIN	FOCAL	6	"FBXO10,FRMPD1,GRHPR,POLR1E,TOMM5,ZBTB5"
TCGA.CK.5914.01A	9	37498036	37732254	25	0.6048	SMALL-GAIN	FOCAL	4	"FBXO10,FRMPD1,POLR1E,TOMM5"
TCGA.AA.A00N.01A	9	37502988	37740035	27	0.3833	SMALL-GAIN	FOCAL	4	"FBXO10,FRMPD1,POLR1E,TOMM5"
TCGA.AG.3909.01A	9	37502988	37744339	28	0.4972	SMALL-GAIN	FOCAL	4	"FBXO10,FRMPD1,POLR1E,TOMM5"
TCGA.AA.A010.01A	9	37777570	38015956	19	0.4647	SMALL-GAIN	FOCAL	5	"DCAF10,EXOSC3,SHB,SLC25A51,TRMT10B"
TCGA.CK.5914.01A	9	37854748	38067957	12	0.5638	SMALL-GAIN	FOCAL	3	"DCAF10,SHB,SLC25A51"
TCGA.NH.A8F8	9	44866027	69824963	9	0.416	SMALL-GAIN	FOCAL	8	"ANKRD20A1,ANKRD20A3,ANKRD20A4,CBWD5,CBWD6,FOXD4L6,SPATA31A5,SPATA31A7"
TCGA.DM.A28A	9	70987820	71513267	221	0.5488	SMALL-GAIN	FOCAL	4	"FAM122A,PGM5,PIP5K1B,TMEM252"
TCGA.AA.A00N.01A	9	71437469	71606008	11	0.6171	SMALL-GAIN	FOCAL	1	PIP5K1B
TCGA.AA.3850	9	71525827	71748926	111	0.39525	SMALL-GAIN	FOCAL	4	"FXN,PIP5K1B,PRKACG,TJP2"
TCGA.AG.A008.01A	9	71827394	71852760	13	0.4778	SMALL-GAIN	FOCAL	1	TJP2
TCGA.AA.A00N.01A	9	71862940	72840839	53	0.6621	SMALL-GAIN	FOCAL	6	"APBA1,C9orf135,FAM189A2,MAMDC2,PTAR1,TJP2"
TCGA.AG.3909.01A	9	71862940	72873948	52	0.3937	SMALL-GAIN	FOCAL	7	"APBA1,C9orf135,FAM189A2,MAMDC2,PTAR1,SMC5,TJP2"
TCGA.AA.3844	9	71883453	71978003	36	0.3818	SMALL-GAIN	FOCAL	1	FAM189A2
TCGA.AA.A00D.01A	9	72879181	72901064	7	0.6535	SMALL-GAIN	FOCAL	1	SMC5
TCGA.AA.A00Q.01A	9	72892199	72967065	20	0.5028	SMALL-GAIN	FOCAL	1	SMC5
TCGA.AA.A00N.01A	9	72901064	74489510	77	0.6586	SMALL-GAIN	FOCAL	5	"ABHD17B,KLF9,SMC5,TMEM2,TRPM3"
TCGA.AG.3909.01A	9	72901064	74489510	73	0.4229	SMALL-GAIN	FOCAL	5	"ABHD17B,KLF9,SMC5,TMEM2,TRPM3"
TCGA.AG.A00C.01A	9	72933382	72965013	9	0.4396	SMALL-GAIN	FOCAL	1	SMC5
TCGA.AA.3941	9	74248053	74969075	236	0.4325	SMALL-GAIN	FOCAL	6	"ABHD17B,C9orf57,C9orf85,GDA,TMEM2,ZFAND5"
TCGA.AA.A00D.01A	9	74526604	74810399	6	0.6247	SMALL-GAIN	FOCAL	3	"C9orf57,C9orf85,GDA"
TCGA.AA.A00N.01A	9	74667184	74865602	20	0.4106	SMALL-GAIN	FOCAL	2	"C9orf57,GDA"
TCGA.AG.3909.01A	9	74764428	74865602	15	0.4653	SMALL-GAIN	FOCAL	1	GDA
TCGA.AG.A008.01A	9	74970837	74975506	5	0.464	SMALL-GAIN	FOCAL	1	ZFAND5
TCGA.AA.3844	9	74977516	75703529	196	0.445	SMALL-GAIN	FOCAL	3	"ALDH1A1,TMC1,ZFAND5"
TCGA.AA.3941	9	74977979	75284987	90	0.383	SMALL-GAIN	FOCAL	2	"TMC1,ZFAND5"
TCGA.AA.A00N.01A	9	74979330	75404017	12	0.4013	SMALL-GAIN	FOCAL	2	"TMC1,ZFAND5"
TCGA.CK.5914.01A	9	74979330	75404017	12	0.5321	SMALL-GAIN	FOCAL	2	"TMC1,ZFAND5"
TCGA.AG.3909.01A	9	75516063	77448872	66	0.412	SMALL-GAIN	FOCAL	4	"ALDH1A1,ANXA1,RORB,TRPM6"
TCGA.CK.5914.01A	9	75543770	77442571	57	0.6494	SMALL-GAIN	FOCAL	4	"ALDH1A1,ANXA1,RORB,TRPM6"
TCGA.AA.A00F.01A	9	79002286	79117290	4	0.5418	SMALL-GAIN	FOCAL	2	"GCNT1,RFK"
TCGA.AA.3979	9	79205348	79425691	121	0.5912	SMALL-GAIN	FOCAL	1	PRUNE2
TCGA.AA.A00N.01A	9	79229401	79465347	23	0.6536	SMALL-GAIN	FOCAL	1	PRUNE2
TCGA.AA.3850	9	79272018	79401654	71	0.46035	SMALL-GAIN	FOCAL	1	PRUNE2
TCGA.AG.3727	9	79709823	79731046	9	0.6142	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00Q.01A	9	79814851	79985730	61	0.4432	SMALL-GAIN	FOCAL	1	VPS13A
TCGA.AG.A00C.01A	9	80851250	80866809	8	0.5136	SMALL-GAIN	FOCAL	1	CEP78
TCGA.AG.A00C.01A	9	80912060	80923283	6	0.4804	SMALL-GAIN	FOCAL	1	PSAT1
TCGA.AA.3844	9	83727200	84717630	257	0.4089	SMALL-GAIN	FOCAL	4	"SPATA31D1,SPATA31D3,SPATA31D4,TLE1"
TCGA.AG.A00C.01A	9	86518397	86615925	22	0.4614	SMALL-GAIN	FOCAL	4	"C9orf64,HNRNPK,KIF27,RMI1"
TCGA.AA.A00D.01A	9	86530159	86615925	19	0.4031	SMALL-GAIN	FOCAL	4	"C9orf64,HNRNPK,KIF27,RMI1"
TCGA.AA.A00N.01A	9	86615925	87549029	35	0.6424	SMALL-GAIN	FOCAL	3	"NTRK2,RMI1,SLC28A3"
TCGA.AG.3909.01A	9	86615925	87636116	38	0.6163	SMALL-GAIN	FOCAL	3	"NTRK2,RMI1,SLC28A3"
TCGA.CK.5914.01A	9	86615925	88844389	100	0.51	SMALL-GAIN	FOCAL	7	"AGTPBP1,C9orf153,GOLM1,NAA35,NTRK2,RMI1,SLC28A3"
TCGA.AG.3726	9	86880492	89169687	794	0.4158	SMALL-GAIN	FOCAL	8	"AGTPBP1,C9orf153,GOLM1,ISCA1,NAA35,NTRK2,SLC28A3,ZCCHC6"
TCGA.AG.A00C.01A	9	88327342	88573345	4	0.4071	SMALL-GAIN	FOCAL	2	"AGTPBP1,NAA35"
TCGA.AA.A00N.01A	9	88581473	88844389	31	0.4927	SMALL-GAIN	FOCAL	3	"C9orf153,GOLM1,NAA35"
TCGA.AG.A00C.01A	9	88880907	89560636	29	0.4393	SMALL-GAIN	FOCAL	3	"GAS1,ISCA1,ZCCHC6"
TCGA.AA.A00F.01A	9	90252831	90345871	9	0.4502	SMALL-GAIN	FOCAL	2	"CTSL,DAPK1"
TCGA.AG.A00C.01A	9	90342472	90345871	7	0.5158	SMALL-GAIN	FOCAL	1	CTSL
TCGA.AA.A00N.01A	9	90395995	91159291	31	0.4059	SMALL-GAIN	FOCAL	6	"CDK20,NXNL2,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.AG.A01L.01A	9	90499806	90538310	12	0.4933	SMALL-GAIN	FOCAL	2	"SPATA31C1,SPATA31E1"
TCGA.AA.A00N.01A	9	91628314	91792885	14	0.547	SMALL-GAIN	FOCAL	1	SHC3
TCGA.AG.A00C.01A	9	91930054	91956210	11	0.3973	SMALL-GAIN	FOCAL	2	"CKS2,SECISBP2"
TCGA.AG.3726	9	92318219	94335199	798	0.4159	SMALL-GAIN	FOCAL	4	"AUH,DIRAS2,NFIL3,SYK"
TCGA.AA.A010.01A	9	94800489	95072788	57	0.4719	SMALL-GAIN	FOCAL	3	"IARS,NOL8,SPTLC1"
TCGA.AG.A00C.01A	9	95069121	95094415	11	0.4773	SMALL-GAIN	FOCAL	2	"CENPP,NOL8"
TCGA.CK.5914.01A	9	95107939	95373535	29	0.3814	SMALL-GAIN	FOCAL	5	"ASPN,CENPP,ECM2,OGN,OMD"
TCGA.AA.A00N.01A	9	95141992	95373535	28	0.6573	SMALL-GAIN	FOCAL	5	"ASPN,CENPP,ECM2,OGN,OMD"
TCGA.CK.5914.01A	9	97054571	97333693	24	0.631	SMALL-GAIN	FOCAL	4	"FBP2,HIATL1,NUTM2F,ZNF169"
TCGA.AA.A00D.01A	9	99098931	99252191	19	0.4562	SMALL-GAIN	FOCAL	3	"HABP4,SLC35D2,ZNF367"
TCGA.AA.A00Q.01A	9	99106155	99233233	15	0.5746	SMALL-GAIN	FOCAL	3	"HABP4,SLC35D2,ZNF367"
TCGA.AA.A00F.01A	9	99324925	99413891	8	0.4962	SMALL-GAIN	FOCAL	2	"AAED1,CDC14B"
TCGA.AG.3901	9	99508479	99535070	13	0.6441	SMALL-GAIN	FOCAL	1	ZNF510
TCGA.CK.5914.01A	9	99521013	99735091	19	0.4097	SMALL-GAIN	FOCAL	3	"NUTM2G,ZNF510,ZNF782"
TCGA.AA.A00F.01A	9	99607122	99800173	10	0.3856	SMALL-GAIN	FOCAL	3	"CTSV,NUTM2G,ZNF782"
TCGA.AA.A00N.01A	9	99960538	100128830	33	0.4715	SMALL-GAIN	FOCAL	1	CCDC180
TCGA.AG.3909.01A	9	100069955	100128830	26	0.473	SMALL-GAIN	FOCAL	1	CCDC180
TCGA.CK.5914.01A	9	100079300	100127900	19	0.6128	SMALL-GAIN	FOCAL	1	CCDC180
TCGA.AG.3906.01A	9	100257918	100353581	9	0.5628	SMALL-GAIN	FOCAL	2	"TDRD7,TMOD1"
TCGA.AG.3909.01A	9	100286444	100324967	4	0.5269	SMALL-GAIN	FOCAL	1	TMOD1
TCGA.AA.A00N.01A	9	100416038	100433340	13	0.6064	SMALL-GAIN	FOCAL	1	NCBP1
TCGA.DM.A28A	9	100965471	101663364	343	0.5252	SMALL-GAIN	FOCAL	4	"ANKS6,GABBR2,GALNT12,TBC1D2"
TCGA.AA.A00N.01A	9	100995647	101536149	31	0.5801	SMALL-GAIN	FOCAL	3	"ANKS6,GABBR2,TBC1D2"
TCGA.CK.5914.01A	9	100995647	101536149	31	0.6676	SMALL-GAIN	FOCAL	3	"ANKS6,GABBR2,TBC1D2"
TCGA.AG.3909.01A	9	101061479	101536149	23	0.5871	SMALL-GAIN	FOCAL	2	"ANKS6,GABBR2"
TCGA.AA.A00N.01A	9	101767131	101911450	36	0.481	SMALL-GAIN	FOCAL	2	"COL15A1,TGFBR1"
TCGA.AA.A010.01A	9	102713330	103114625	48	0.64	SMALL-GAIN	FOCAL	4	"ERP44,INVS,STX17,TEX10"
TCGA.AG.A00C.01A	9	103090020	103260999	11	0.4001	SMALL-GAIN	FOCAL	4	"MSANTD3,MSANTD3-TMEFF1,TEX10,TMEFF1"
TCGA.AA.A00N.01A	9	104314907	105405363	20	0.4299	SMALL-GAIN	FOCAL	3	"GRIN3A,PPP3R2,RNF20"
TCGA.CK.5914.01A	9	106873860	107510017	26	0.5522	SMALL-GAIN	FOCAL	10	"NIPSNAP3A,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.AA.3850	9	107531151	108050417	249	0.39905	SMALL-GAIN	FOCAL	3	"ABCA1,NIPSNAP3B,SLC44A1"
TCGA.AA.3844	9	107531151	108620960	393	0.5107	SMALL-GAIN	FOCAL	7	"ABCA1,FKTN,FSD1L,NIPSNAP3B,SLC44A1,TAL2,TMEM38B"
TCGA.AA.A010.01A	9	107568472	107583608	11	0.4987	SMALL-GAIN	FOCAL	1	ABCA1
TCGA.AG.3909.01A	9	107568472	107602523	22	0.6444	SMALL-GAIN	FOCAL	1	ABCA1
TCGA.AG.3906.01A	9	107617948	107651330	6	0.6454	SMALL-GAIN	FOCAL	1	ABCA1
TCGA.AG.A00C.01A	9	107617948	107665831	7	0.4808	SMALL-GAIN	FOCAL	1	ABCA1
TCGA.AA.3941	9	107671658	108248711	232	0.4037	SMALL-GAIN	FOCAL	3	"ABCA1,FSD1L,SLC44A1"
TCGA.AZ.4684.01A	9	108097817	108536129	47	0.5939	SMALL-GAIN	FOCAL	5	"FKTN,FSD1L,SLC44A1,TAL2,TMEM38B"
TCGA.AA.A00N.01A	9	108337272	108382175	9	0.5542	SMALL-GAIN	FOCAL	1	FKTN
TCGA.AA.3844	9	108626918	108671467	23	0.6025	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	9	109803382	109812225	9	0.63405	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	9	109803382	109921230	49	0.4703	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	9	109932566	109997813	31	0.4888	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	9	110001456	110080197	24	0.5589	SMALL-GAIN	FOCAL	1	RAD23B
TCGA.AA.3941	9	110002449	110448723	193	0.4696	SMALL-GAIN	FOCAL	2	"KLF4,RAD23B"
TCGA.AA.3850	9	110085254	110362545	115	0.53545	SMALL-GAIN	FOCAL	2	"KLF4,RAD23B"
TCGA.AA.3844	9	110099056	112378976	1133	0.4758	SMALL-GAIN	FOCAL	10	"ACTL7A,ACTL7B,CTNNAL1,EPB41L4B,FAM206A,FRRS1L,IKBKAP,KLF4,PTPN3,TMEM245"
TCGA.AG.A00C.01A	9	110248005	111617526	5	0.4092	SMALL-GAIN	FOCAL	2	"ACTL7B,KLF4"
TCGA.AG.3909.01A	9	111808480	111848217	8	0.5434	SMALL-GAIN	FOCAL	1	TMEM245
TCGA.AA.A00N.01A	9	111819424	111855704	9	0.5841	SMALL-GAIN	FOCAL	1	TMEM245
TCGA.AG.A00C.01A	9	111868760	111938779	8	0.4272	SMALL-GAIN	FOCAL	3	"EPB41L4B,FRRS1L,TMEM245"
TCGA.AA.3941	9	111868776	112379934	214	0.4537	SMALL-GAIN	FOCAL	4	"EPB41L4B,FRRS1L,PTPN3,TMEM245"
TCGA.AA.A00N.01A	9	111947722	112969617	61	0.5973	SMALL-GAIN	FOCAL	6	"AKAP2,C9orf152,EPB41L4B,PALM2,PALM2-AKAP2,PTPN3"
TCGA.AG.3909.01A	9	111947722	112969617	59	0.6099	SMALL-GAIN	FOCAL	6	"AKAP2,C9orf152,EPB41L4B,PALM2,PALM2-AKAP2,PTPN3"
TCGA.AA.A010.01A	9	111956460	112969617	59	0.4938	SMALL-GAIN	FOCAL	6	"AKAP2,C9orf152,EPB41L4B,PALM2,PALM2-AKAP2,PTPN3"
TCGA.AG.A00C.01A	9	113006390	113066683	6	0.4112	SMALL-GAIN	FOCAL	2	"TXN,TXNDC8"
TCGA.AA.3982	9	113332267	113368084	21	0.3915	SMALL-GAIN	FOCAL	1	SVEP1
TCGA.AG.3909.01A	9	113637663	114206611	49	0.4327	SMALL-GAIN	FOCAL	3	"KIAA0368,LPAR1,OR2K2"
TCGA.AG.A00C.01A	9	114206611	114449030	24	0.4109	SMALL-GAIN	FOCAL	7	"C9orf84,DNAJC25,DNAJC25-GNG10,GNG10,KIAA0368,PTGR1,ZNF483"
TCGA.AA.3941	9	114231313	114394274	37	0.5501	SMALL-GAIN	FOCAL	5	"DNAJC25,DNAJC25-GNG10,KIAA0368,PTGR1,ZNF483"
TCGA.CK.5914.01A	9	114303955	114348247	10	0.5938	SMALL-GAIN	FOCAL	2	"PTGR1,ZNF483"
TCGA.AG.3891.01A	9	114355131	114415328	7	0.5909	SMALL-GAIN	FOCAL	3	"DNAJC25,DNAJC25-GNG10,PTGR1"
TCGA.AA.3941	9	114401172	114447714	24	0.5166	SMALL-GAIN	FOCAL	3	"DNAJC25,DNAJC25-GNG10,GNG10"
TCGA.AA.3941	9	114543693	115667465	368	0.4977	SMALL-GAIN	FOCAL	9	"C9orf84,HSDL2,INIP,KIAA1958,PTBP3,SLC46A2,SNX30,SUSD1,UGCG"
TCGA.AA.3850	9	114548450	115002633	173	0.41085	SMALL-GAIN	FOCAL	3	"PTBP3,SUSD1,UGCG"
TCGA.AA.3844	9	114568896	115667465	361	0.6052	SMALL-GAIN	FOCAL	8	"HSDL2,INIP,KIAA1958,PTBP3,SLC46A2,SNX30,SUSD1,UGCG"
TCGA.AA.3831	9	114726761	115080457	118	0.3787	SMALL-GAIN	FOCAL	2	"PTBP3,SUSD1"
TCGA.AA.3850	9	115021012	115656014	179	0.39975	SMALL-GAIN	FOCAL	6	"HSDL2,INIP,KIAA1958,PTBP3,SLC46A2,SNX30"
TCGA.AA.A010.01A	9	115336354	115759380	24	0.5641	SMALL-GAIN	FOCAL	4	"INIP,KIAA1958,SLC46A2,SNX30"
TCGA.AA.3844	9	115862517	115944744	43	0.4089	SMALL-GAIN	FOCAL	2	"FKBP15,SLC31A2"
TCGA.AA.A010.01A	9	115913287	116082597	56	0.4146	SMALL-GAIN	FOCAL	7	"CDC26,FKBP15,PRPF4,RNF183,SLC31A1,SLC31A2,WDR31"
TCGA.AG.3883	9	115949522	116148240	76	0.3883	SMALL-GAIN	FOCAL	8	"BSPRY,CDC26,FKBP15,HDHD3,PRPF4,RNF183,SLC31A1,WDR31"
TCGA.AG.3611.01A	9	116171051	116226026	16	0.602	SMALL-GAIN	FOCAL	3	"C9orf43,POLE3,RGS3"
TCGA.AA.A00D.01A	9	116181330	116226026	12	0.4979	SMALL-GAIN	FOCAL	2	"C9orf43,RGS3"
TCGA.AG.3909.01A	9	116940505	117088513	48	0.4766	SMALL-GAIN	FOCAL	2	"COL27A1,ORM1"
TCGA.CK.5914.01A	9	116945272	117386578	98	0.3829	SMALL-GAIN	FOCAL	7	"AKNA,ATP6V1G1,C9orf91,COL27A1,DFNB31,ORM1,ORM2"
TCGA.AG.4009.01A	9	116956623	117240600	82	0.3877	SMALL-GAIN	FOCAL	5	"AKNA,COL27A1,DFNB31,ORM1,ORM2"
TCGA.AA.A00N.01A	9	116958174	116982007	8	0.3804	SMALL-GAIN	FOCAL	1	COL27A1
TCGA.AA.A00N.01A	9	117118157	117350058	26	0.6533	SMALL-GAIN	FOCAL	3	"AKNA,ATP6V1G1,DFNB31"
TCGA.CK.5914.01A	9	123165035	123313038	31	0.6217	SMALL-GAIN	FOCAL	1	CDK5RAP2
TCGA.AG.3909.01A	9	123667247	123751275	23	0.4719	SMALL-GAIN	FOCAL	2	"C5,TRAF1"
TCGA.DM.A28A	9	123720482	124721530	283	0.5155	SMALL-GAIN	FOCAL	7	"C5,CNTRL,DAB2IP,GSN,RAB14,STOM,TTLL11"
TCGA.AA.A00N.01A	9	123722474	123805235	35	0.5215	SMALL-GAIN	FOCAL	1	C5
TCGA.AA.A010.01A	9	123850578	123900776	14	0.6202	SMALL-GAIN	FOCAL	1	CNTRL
TCGA.AG.3909.01A	9	123900776	123943625	26	0.529	SMALL-GAIN	FOCAL	2	"CNTRL,RAB14"
TCGA.AG.A00C.01A	9	123945546	124045850	7	0.4749	SMALL-GAIN	FOCAL	2	"GSN,RAB14"
TCGA.AA.A00F.01A	9	125004116	125042671	7	0.3903	SMALL-GAIN	FOCAL	2	"MRRF,RBM18"
TCGA.AG.A00C.01A	9	125611857	125719302	21	0.4785	SMALL-GAIN	FOCAL	4	"RABGAP1,RC3H2,ZBTB26,ZBTB6"
TCGA.AA.A02K.01A	9	125746773	127218863	106	0.4549	SMALL-GAIN	FOCAL	8	"CRB2,DENND1A,GPR21,LHX2,NEK6,PSMB7,RABGAP1,STRBP"
TCGA.AA.A00L.01A	9	125838861	125861704	6	0.6154	SMALL-GAIN	FOCAL	1	RABGAP1
TCGA.AA.A00N.01A	9	125851997	125946321	27	0.6568	SMALL-GAIN	FOCAL	2	"RABGAP1,STRBP"
TCGA.AG.3909.01A	9	126202644	126641164	18	0.5147	SMALL-GAIN	FOCAL	1	DENND1A
TCGA.AG.A00C.01A	9	126776198	126783337	3	0.6586	SMALL-GAIN	FOCAL	1	LHX2
TCGA.AA.A010.01A	9	127651402	128094772	68	0.5352	SMALL-GAIN	FOCAL	6	"GAPVD1,GOLGA1,HSPA5,PPP6C,RABEPK,SCAI"
TCGA.AA.3844	9	128446364	128557720	17	0.6032	SMALL-GAIN	FOCAL	2	"MAPKAP1,PBX3"
TCGA.AG.A01W.01A	9	129511546	129535357	22	0.5236	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	9	129724497	130127515	45	0.4908	SMALL-GAIN	FOCAL	3	"ANGPTL2,GARNL3,RALGPS1"
TCGA.AA.A010.01A	9	130027125	130293876	83	0.4496	SMALL-GAIN	FOCAL	6	"FAM129B,GARNL3,LRSAM1,RPL12,SLC2A8,ZNF79"
TCGA.AA.A01Q.01A	9	130147258	130186973	12	0.5603	SMALL-GAIN	FOCAL	3	"GARNL3,SLC2A8,ZNF79"
TCGA.AA.A00L.01A	9	130186973	130253433	29	0.5102	SMALL-GAIN	FOCAL	3	"LRSAM1,RPL12,ZNF79"
TCGA.AG.A01W.01A	9	130382971	130393526	11	0.4928	SMALL-GAIN	FOCAL	1	STXBP1
TCGA.AG.A01W.01A	9	130622803	130631147	10	0.4665	SMALL-GAIN	FOCAL	1	AK1
TCGA.AG.3611.01A	9	131036126	131083831	9	0.6365	SMALL-GAIN	FOCAL	3	"GOLGA2,SWI5,TRUB2"
TCGA.AA.A010.01A	9	131196677	131289421	31	0.4387	SMALL-GAIN	FOCAL	3	"CERCAM,GLE1,ODF2"
TCGA.AA.A00L.01A	9	131233558	131289421	23	0.5144	SMALL-GAIN	FOCAL	2	"GLE1,ODF2"
TCGA.AA.A00N.01A	9	131339105	131418773	53	0.6331	SMALL-GAIN	FOCAL	2	"SPTAN1,WDR34"
TCGA.AG.4009.01A	9	131502229	131514911	7	0.4879	SMALL-GAIN	FOCAL	1	ZER1
TCGA.AG.3906.01A	9	131513363	131599043	25	0.442	SMALL-GAIN	FOCAL	5	"C9orf114,CCBL1,ENDOG,TBC1D13,ZER1"
TCGA.AG.3909.01A	9	131733020	131772013	31	0.5287	SMALL-GAIN	FOCAL	2	"NUP188,SH3GLB2"
TCGA.AA.A00N.01A	9	131760763	131776639	18	0.4239	SMALL-GAIN	FOCAL	2	"NUP188,SH3GLB2"
TCGA.AG.3906.01A	9	131776998	131832080	13	0.5438	SMALL-GAIN	FOCAL	2	"FAM73B,SH3GLB2"
TCGA.AG.A01W.01A	9	132488768	132543701	12	0.4133	SMALL-GAIN	FOCAL	1	PTGES
TCGA.AG.A00C.01A	9	132566334	132595662	13	0.66	SMALL-GAIN	FOCAL	3	"C9orf78,TOR1A,TOR1B"
TCGA.AA.A01Q.01A	9	132596919	132816185	5	0.5447	SMALL-GAIN	FOCAL	4	"C9orf78,FNBP1,GPR107,USP20"
TCGA.CK.5914.01A	9	132671122	133065717	49	0.5675	SMALL-GAIN	FOCAL	4	"FNBP1,GPR107,HMCN2,NCS1"
TCGA.AA.A00N.01A	9	132981956	133233199	28	0.5571	SMALL-GAIN	FOCAL	2	"HMCN2,NCS1"
TCGA.AA.A01Q.01A	9	133048415	133300116	6	0.5865	SMALL-GAIN	FOCAL	1	HMCN2
TCGA.CK.5914.01A	9	133710785	133750203	7	0.6254	SMALL-GAIN	FOCAL	1	ABL1
TCGA.AG.3909.01A	9	133927847	133966906	18	0.4951	SMALL-GAIN	FOCAL	1	LAMC3
TCGA.CK.5914.01A	9	133946833	133971933	11	0.3843	SMALL-GAIN	FOCAL	2	"AIF1L,LAMC3"
TCGA.CK.5914.01A	9	134307954	134346178	12	0.5861	SMALL-GAIN	FOCAL	1	PRRC2B
TCGA.AA.A010.01A	9	134334529	134366762	21	0.4604	SMALL-GAIN	FOCAL	1	PRRC2B
TCGA.AG.A00C.01A	9	134379559	134393556	11	0.4629	SMALL-GAIN	FOCAL	1	POMT1
TCGA.AG.3909.01A	9	134494386	134584942	12	0.6505	SMALL-GAIN	FOCAL	1	RAPGEF1
TCGA.CK.5914.01A	9	135753503	135926131	36	0.6055	SMALL-GAIN	FOCAL	5	"AK8,C9orf9,GFI1B,GTF3C5,TSC1"
TCGA.AG.3906.01A	9	135931352	136036788	19	0.6608	SMALL-GAIN	FOCAL	4	"CEL,GBGT1,GTF3C5,RALGDS"
TCGA.AA.A00Q.01A	9	136083808	136131005	9	0.6632	SMALL-GAIN	FOCAL	2	"ABO,OBP2B"
TCGA.AG.A00C.01A	9	136132744	136245872	32	0.4343	SMALL-GAIN	FOCAL	8	"ABO,MED22,RPL7A,STKLD1,SURF1,SURF2,SURF4,SURF6"
TCGA.AA.A00F.01A	9	136217795	136249574	15	0.4705	SMALL-GAIN	FOCAL	5	"RPL7A,STKLD1,SURF1,SURF2,SURF4"
TCGA.AG.A008.01A	9	136901115	137021585	20	0.4838	SMALL-GAIN	FOCAL	2	"BRD3,WDR5"
TCGA.AG.A00C.01A	9	136916637	137022976	16	0.5398	SMALL-GAIN	FOCAL	2	"BRD3,WDR5"
TCGA.AG.3891.01A	9	136917381	137013340	9	0.4824	SMALL-GAIN	FOCAL	2	"BRD3,WDR5"
TCGA.AM.5820	9	136992902	137205187	42	0.5659	SMALL-GAIN	FOCAL	1	WDR5
TCGA.AM.5820	9	137353293	138312020	385	0.4823	SMALL-GAIN	FOCAL	5	"C9orf62,COL5A1,FCN1,FCN2,OLFM1"
TCGA.AG.3909.01A	9	137630254	137690179	27	0.4353	SMALL-GAIN	FOCAL	1	COL5A1
TCGA.AM.5820	9	138342417	138519160	57	0.4347	SMALL-GAIN	FOCAL	7	"C9orf116,GLT6D1,LCN1,MRPS2,OBP2A,PAEP,PPP1R26"
TCGA.AG.3906.01A	9	138376310	138390379	6	0.5332	SMALL-GAIN	FOCAL	2	"C9orf116,PPP1R26"
TCGA.AG.A01L.01A	9	138376310	138441069	16	0.4085	SMALL-GAIN	FOCAL	5	"C9orf116,LCN1,MRPS2,OBP2A,PPP1R26"
TCGA.SS.A7HO	9	138411771	138707726	82	0.4276	SMALL-GAIN	FOCAL	8	"CAMSAP1,GLT6D1,KCNT1,LCN1,LCN9,OBP2A,PAEP,SOHLH1"
TCGA.AA.A010.01A	9	138707684	138758251	12	0.3916	SMALL-GAIN	FOCAL	1	CAMSAP1
TCGA.AA.A00F.01A	9	139288651	139312415	13	0.5807	SMALL-GAIN	FOCAL	3	"PMPCA,SDCCAG3,SNAPC4"
TCGA.AG.A01L.01A	9	139298467	139310704	12	0.4857	SMALL-GAIN	FOCAL	2	"PMPCA,SDCCAG3"
TCGA.AG.3891.01A	9	139973391	140033890	19	0.5987	SMALL-GAIN	FOCAL	4	"DPP7,GRIN1,MAN1B1,UAP1L1"
TCGA.AG.3906.01A	9	140150381	140161349	5	0.4024	SMALL-GAIN	FOCAL	1	NELFB
TCGA.AG.3906.01A	9	140350840	140510084	26	0.494	SMALL-GAIN	FOCAL	6	"ARRDC1,DPH7,MRPL41,NSMF,PNPLA7,ZMYND19"
TCGA.AA.3844	9	140760660	141071474	49	0.5054	SMALL-GAIN	FOCAL	1	CACNA1B
TCGA.CK.5914.01A	9	140777147	140904405	15	0.4811	SMALL-GAIN	FOCAL	1	CACNA1B
TCGA.AA.A00N.01A	9	140807581	140881184	12	0.6624	SMALL-GAIN	FOCAL	1	CACNA1B
TCGA.AA.A01Q.01A	9	140811664	141000113	12	0.4564	SMALL-GAIN	FOCAL	1	CACNA1B
TCGA.AG.3909.01A	9	140851153	140901170	8	0.6621	SMALL-GAIN	FOCAL	1	CACNA1B
TCGA.AG.4008	9	140924464	140969591	16	0.4317	SMALL-GAIN	FOCAL	1	CACNA1B
TCGA.AG.3896	9	140962686	141071474	27	0.6192	SMALL-GAIN	FOCAL	1	CACNA1B
TCGA.AF.3914.01A	10	93180	3143518	122	0.5508	SMALL-GAIN	FOCAL	10	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,TUBB8,WDR37,ZMYND11"
TCGA.AA.3941	10	135655	163706	12	0.4467	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	10	281895	1546668	435	0.43775	SMALL-GAIN	FOCAL	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AA.3941	10	281895	3469020	1635	0.3795	SMALL-GAIN	FOCAL	10	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.AA.A00L.01A	10	1038417	1062977	14	0.6042	SMALL-GAIN	FOCAL	1	GTPBP4
TCGA.AA.A00D.01A	10	1038417	1125912	25	0.453	SMALL-GAIN	FOCAL	4	"GTPBP4,IDI1,IDI2,WDR37"
TCGA.A6.A567	10	1125768	3962053	1633	0.6171	SMALL-GAIN	FOCAL	5	"ADARB2,KLF6,PFKP,PITRM1,WDR37"
TCGA.AG.A00C.01A	10	3199080	3822278	13	0.4345	SMALL-GAIN	FOCAL	2	"KLF6,PITRM1"
TCGA.AA.3941	10	3507738	3646049	59	0.3792	SMALL-GAIN	FOCAL	0	None
TCGA.A6.A567	10	3962231	4958840	534	0.3972	SMALL-GAIN	FOCAL	1	AKR1E2
TCGA.AA.3861.01A	10	4889280	5011789	9	0.5869	SMALL-GAIN	FOCAL	2	"AKR1C1,AKR1E2"
TCGA.AA.A00N.01A	10	5005580	5014725	9	0.4098	SMALL-GAIN	FOCAL	1	AKR1C1
TCGA.CK.5914.01A	10	5005580	5437257	50	0.5264	SMALL-GAIN	FOCAL	6	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,TUBAL3,UCN3"
TCGA.AA.3509.01A	10	5005580	5468565	52	0.3943	SMALL-GAIN	FOCAL	7	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,NET1,TUBAL3,UCN3"
TCGA.AA.3861.01A	10	5040766	5254930	30	0.4675	SMALL-GAIN	FOCAL	3	"AKR1C2,AKR1C3,AKR1C4"
TCGA.AM.5820	10	5394998	5404346	14	0.5661	SMALL-GAIN	FOCAL	0	None
TCGA.AM.5820	10	5495156	5652236	74	0.3973	SMALL-GAIN	FOCAL	3	"CALML3,CALML5,NET1"
TCGA.AA.A00N.01A	10	5947982	6104002	31	0.4162	SMALL-GAIN	FOCAL	3	"FBXO18,IL15RA,IL2RA"
TCGA.AA.A010.01A	10	6470119	8006481	99	0.4853	SMALL-GAIN	FOCAL	7	"ATP5C1,ITIH2,ITIH5,KIN,PRKCQ,SFMBT2,TAF3"
TCGA.AA.A00N.01A	10	7755097	7811131	23	0.4151	SMALL-GAIN	FOCAL	2	"ITIH2,KIN"
TCGA.AG.3726	10	10296118	12580411	1003	0.4026	SMALL-GAIN	FOCAL	10	"CAMK1D,CDC123,CELF2,DHTKD1,ECHDC3,NUDT5,PROSER2,SEC61A2,UPF2,USP6NL"
TCGA.AA.A010.01A	10	11207412	11574103	29	0.5081	SMALL-GAIN	FOCAL	2	"CELF2,USP6NL"
TCGA.AA.A010.01A	10	11962979	13169728	99	0.4505	SMALL-GAIN	FOCAL	8	"CAMK1D,CCDC3,CDC123,DHTKD1,NUDT5,OPTN,SEC61A2,UPF2"
TCGA.AG.3906.01A	10	12123424	12195673	21	0.4115	SMALL-GAIN	FOCAL	2	"DHTKD1,SEC61A2"
TCGA.AG.3726	10	12599693	14252604	940	0.4142	SMALL-GAIN	FOCAL	10	"BEND7,CAMK1D,CCDC3,FRMD4A,MCM10,OPTN,PHYH,PRPF18,SEPHS1,UCMA"
TCGA.AA.A00D.01A	10	13040291	13228123	22	0.4309	SMALL-GAIN	FOCAL	3	"CCDC3,MCM10,OPTN"
TCGA.CK.5914.01A	10	13224881	13276131	15	0.4355	SMALL-GAIN	FOCAL	2	"MCM10,UCMA"
TCGA.AA.A010.01A	10	13230829	13364833	25	0.4574	SMALL-GAIN	FOCAL	4	"MCM10,PHYH,SEPHS1,UCMA"
TCGA.AA.A00N.01A	10	13522857	13672220	15	0.428	SMALL-GAIN	FOCAL	2	"BEND7,PRPF18"
TCGA.AA.A00N.01A	10	13716870	14861931	24	0.4976	SMALL-GAIN	FOCAL	3	"CDNF,FAM107B,FRMD4A"
TCGA.CK.5914.01A	10	13735780	14563831	19	0.4629	SMALL-GAIN	FOCAL	2	"FAM107B,FRMD4A"
TCGA.AA.A00N.01A	10	15154764	17271421	160	0.5566	SMALL-GAIN	FOCAL	10	"C1QL3,CUBN,FAM171A1,FAM188A,ITGA8,NMT2,PTER,RSU1,TRDMT1,VIM"
TCGA.AG.3909.01A	10	16991948	17061783	7	0.4349	SMALL-GAIN	FOCAL	1	CUBN
TCGA.AA.A00N.01A	10	17360614	18905076	84	0.4922	SMALL-GAIN	FOCAL	8	"CACNB2,HACD1,MRC1,NSUN6,SLC39A12,ST8SIA6,STAM,TMEM236"
TCGA.CK.5914.01A	10	18429636	18898715	25	0.4914	SMALL-GAIN	FOCAL	2	"CACNB2,NSUN6"
TCGA.AA.3872	10	19368255	19547471	100	0.4344	SMALL-GAIN	FOCAL	1	MALRD1
TCGA.AF.3914.01A	10	21845564	22217937	33	0.5906	SMALL-GAIN	FOCAL	2	"DNAJC1,MLLT10"
TCGA.AA.A010.01A	10	23528614	24908360	51	0.4179	SMALL-GAIN	FOCAL	4	"ARHGAP21,C10orf67,KIAA1217,OTUD1"
TCGA.AA.A00N.01A	10	25684789	26465578	36	0.6513	SMALL-GAIN	FOCAL	2	"GPR158,MYO3A"
TCGA.AA.A00N.01A	10	26534833	26802416	15	0.6692	SMALL-GAIN	FOCAL	2	"APBB1IP,GAD2"
TCGA.AA.A00N.01A	10	27024140	27366265	43	0.51	SMALL-GAIN	FOCAL	3	"ABI1,ANKRD26,PDSS1"
TCGA.AA.A00D.01A	10	27412429	27462020	20	0.4676	SMALL-GAIN	FOCAL	2	"MASTL,YME1L1"
TCGA.AA.3860	10	27419202	27849086	142	0.4786	SMALL-GAIN	FOCAL	5	"ACBD5,MASTL,PTCHD3,RAB18,YME1L1"
TCGA.AA.A010.01A	10	27425158	27447441	9	0.5619	SMALL-GAIN	FOCAL	2	"MASTL,YME1L1"
TCGA.AG.A00C.01A	10	27512051	27687171	5	0.4724	SMALL-GAIN	FOCAL	2	"ACBD5,PTCHD3"
TCGA.AG.A00C.01A	10	28257803	28283841	8	0.4137	SMALL-GAIN	FOCAL	1	ARMC4
TCGA.AG.A00C.01A	10	30727876	30740520	4	0.6575	SMALL-GAIN	FOCAL	1	MAP3K8
TCGA.AZ.4684.01A	10	31749918	32132340	20	0.5375	SMALL-GAIN	FOCAL	2	"ARHGAP12,ZEB1"
TCGA.AA.3850	10	32034597	32894335	242	0.39645	SMALL-GAIN	FOCAL	4	"ARHGAP12,CCDC7,EPC1,KIF5B"
TCGA.QL.A97D	10	32285167	32368588	24	0.6602	SMALL-GAIN	FOCAL	1	KIF5B
TCGA.A6.A567	10	32555310	32692719	50	0.3897	SMALL-GAIN	FOCAL	1	EPC1
TCGA.A6.A567	10	32698031	33469704	191	0.5294	SMALL-GAIN	FOCAL	3	"CCDC7,ITGB1,NRP1"
TCGA.AG.A00C.01A	10	32740542	32780831	9	0.4588	SMALL-GAIN	FOCAL	1	CCDC7
TCGA.AA.A00D.01A	10	32740542	32833111	13	0.5714	SMALL-GAIN	FOCAL	1	CCDC7
TCGA.AA.A00N.01A	10	32832184	34605986	72	0.5249	SMALL-GAIN	FOCAL	4	"CCDC7,ITGB1,NRP1,PARD3"
TCGA.AA.3692	10	33488813	33579889	57	0.6099	SMALL-GAIN	FOCAL	1	NRP1
TCGA.DM.A28M.01A	10	37436245	43127327	57	0.422	SMALL-GAIN	FOCAL	7	"ANKRD30A,MTRNR2L7,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.AG.A01W.01A	10	37458813	37465477	5	0.3927	SMALL-GAIN	FOCAL	1	ANKRD30A
TCGA.CK.5914.01A	10	37478359	38126891	13	0.6408	SMALL-GAIN	FOCAL	3	"ANKRD30A,MTRNR2L7,ZNF248"
TCGA.F5.6811.01A	10	37545144	38160145	5	0.5656	SMALL-GAIN	FOCAL	2	"MTRNR2L7,ZNF248"
TCGA.AG.3611.01A	10	38301178	38306165	3	0.5025	SMALL-GAIN	FOCAL	1	ZNF33A
TCGA.AG.A01W.01A	10	38725324	43011871	55	0.4725	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3872	10	42502345	44230900	375	0.573	SMALL-GAIN	FOCAL	10	"BMS1,CSGALNACT2,FXYD4,HNRNPF,RASGEF1A,RET,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.AM.5820	10	43422801	43617103	62	0.5737	SMALL-GAIN	FOCAL	1	RET
TCGA.AA.3939.01A	10	43869114	43976830	9	0.399	SMALL-GAIN	FOCAL	2	"FXYD4,HNRNPF"
TCGA.AM.5820	10	45409243	45432385	19	0.6219	SMALL-GAIN	FOCAL	1	TMEM72
TCGA.AA.A010.01A	10	45935828	45939545	6	0.6662	SMALL-GAIN	FOCAL	1	ALOX5
TCGA.AA.A010.01A	10	46222680	46918526	25	0.4767	SMALL-GAIN	FOCAL	3	"AGAP4,FAM21C,PTPN20"
TCGA.AZ.4684.01A	10	46918526	47747025	15	0.3834	SMALL-GAIN	FOCAL	10	"AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R,SYT15"
TCGA.AA.A010.01A	10	46968549	48003912	27	0.6369	SMALL-GAIN	FOCAL	10	"AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R,SYT15"
TCGA.AH.6544	10	47077738	47129683	12	0.5255	SMALL-GAIN	FOCAL	2	"CH17-360D5.1,NPY4R"
TCGA.AA.A00L.01A	10	47161214	47169745	9	0.5445	SMALL-GAIN	FOCAL	1	ANXA8
TCGA.AG.3611.01A	10	47162065	47169745	8	0.5268	SMALL-GAIN	FOCAL	1	ANXA8
TCGA.AM.5820	10	47593132	47621941	19	0.6076	SMALL-GAIN	FOCAL	0	None
TCGA.A6.3810.01A	10	47894517	48001737	20	0.6107	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	10	47909121	48048845	20	0.6471	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A02K.01A	10	48370522	48428605	11	0.6651	SMALL-GAIN	FOCAL	4	"GDF10,GDF2,RBP3,ZNF488"
TCGA.AG.3909.01A	10	49371369	49609653	27	0.3833	SMALL-GAIN	FOCAL	2	"FRMPD2,MAPK8"
TCGA.AA.A010.01A	10	49444474	49617862	12	0.6159	SMALL-GAIN	FOCAL	2	"FRMPD2,MAPK8"
TCGA.AA.A010.01A	10	49763462	50285216	72	0.5124	SMALL-GAIN	FOCAL	4	"ARHGAP22,LRRC18,VSTM4,WDFY4"
TCGA.AA.A00Q.01A	10	49939107	50038726	10	0.5485	SMALL-GAIN	FOCAL	1	WDFY4
TCGA.AA.A01F.01A	10	50943236	50966383	19	0.4864	SMALL-GAIN	FOCAL	1	OGDHL
TCGA.AA.A00N.01A	10	51027334	51465430	19	0.5646	SMALL-GAIN	FOCAL	2	"PARG,TIMM23B"
TCGA.AZ.4684.01A	10	51069572	51362834	8	0.6686	SMALL-GAIN	FOCAL	1	PARG
TCGA.AA.A02K.01A	10	51579139	51648853	17	0.6288	SMALL-GAIN	FOCAL	3	"NCOA4,TIMM23,TIMM23B"
TCGA.AG.3909.01A	10	51846957	52008197	25	0.5798	SMALL-GAIN	FOCAL	2	"ASAH2,FAM21A"
TCGA.AH.6549.01A	10	51893150	51994136	6	0.6685	SMALL-GAIN	FOCAL	2	"ASAH2,FAM21A"
TCGA.CK.5914.01A	10	52566459	54053515	34	0.4773	SMALL-GAIN	FOCAL	3	"A1CF,CSTF2T,PRKG1"
TCGA.DM.A1HA	10	54903083	55551886	239	0.5315	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A1HA	10	55655274	56131149	207	0.5263	SMALL-GAIN	FOCAL	1	PCDH15
TCGA.AA.A00D.01A	10	60147939	60272874	6	0.4838	SMALL-GAIN	FOCAL	1	TFAM
TCGA.AA.A02K.01A	10	60272887	60380548	2	0.6214	SMALL-GAIN	FOCAL	1	BICC1
TCGA.CK.5914.01A	10	60546645	62149161	99	0.4398	SMALL-GAIN	FOCAL	7	"ANK3,BICC1,CCDC6,FAM13C,MRLN,PHYHIPL,SLC16A9"
TCGA.AA.3850	10	61935447	61981246	24	0.58985	SMALL-GAIN	FOCAL	1	ANK3
TCGA.CK.5914.01A	10	62553618	64005690	48	0.4453	SMALL-GAIN	FOCAL	6	"ARID5B,C10orf107,CDK1,RHOBTB1,RTKN2,TMEM26"
TCGA.DM.A1HA	10	63186811	65606228	748	0.5179	SMALL-GAIN	FOCAL	10	"ADO,ARID5B,C10orf107,EGR2,JMJD1C,NRBF2,REEP3,RTKN2,TMEM26,ZNF365"
TCGA.AA.3941	10	64678199	65234552	112	0.4043	SMALL-GAIN	FOCAL	2	"JMJD1C,NRBF2"
TCGA.AA.3850	10	64789406	65234552	77	0.45815	SMALL-GAIN	FOCAL	2	"JMJD1C,NRBF2"
TCGA.AG.3909.01A	10	64927772	65140041	25	0.5257	SMALL-GAIN	FOCAL	1	JMJD1C
TCGA.AA.A00N.01A	10	64936020	65358883	29	0.6141	SMALL-GAIN	FOCAL	2	"JMJD1C,REEP3"
TCGA.AA.3941	10	65274926	65435977	30	0.4034	SMALL-GAIN	FOCAL	1	REEP3
TCGA.AG.3598	10	66795992	68641752	736	0.6058	SMALL-GAIN	FOCAL	1	CTNNA3
TCGA.G4.6317	10	67615558	68356454	313	0.4543	SMALL-GAIN	FOCAL	1	CTNNA3
TCGA.CA.5254	10	67935880	67981063	22	0.5742	SMALL-GAIN	FOCAL	1	CTNNA3
TCGA.AG.3598	10	68649351	69492117	231	0.5828	SMALL-GAIN	FOCAL	2	"CTNNA3,LRRTM3"
TCGA.AA.A00N.01A	10	69669013	69990928	48	0.5334	SMALL-GAIN	FOCAL	4	"ATOH7,HERC4,MYPN,SIRT1"
TCGA.CK.5914.01A	10	69905156	69969996	17	0.546	SMALL-GAIN	FOCAL	1	MYPN
TCGA.AG.3906.01A	10	69948620	70252826	61	0.42	SMALL-GAIN	FOCAL	7	"ATOH7,DNA2,HNRNPH3,MYPN,PBLD,RUFY2,SLC25A16"
TCGA.AA.A00N.01A	10	70360663	70450518	10	0.4585	SMALL-GAIN	FOCAL	1	TET1
TCGA.AG.A00C.01A	10	70641667	70892657	44	0.4233	SMALL-GAIN	FOCAL	6	"DDX21,DDX50,KIAA1279,SRGN,STOX1,VPS26A"
TCGA.AA.A010.01A	10	70986926	71905135	115	0.584	SMALL-GAIN	FOCAL	10	"AIFM2,C10orf35,COL13A1,H2AFY2,HK1,HKDC1,NEUROG3,TACR2,TSPAN15,TYSND1"
TCGA.CK.5914.01A	10	71634814	71690109	24	0.6616	SMALL-GAIN	FOCAL	1	COL13A1
TCGA.AA.A00N.01A	10	71634814	71877531	47	0.6481	SMALL-GAIN	FOCAL	3	"AIFM2,COL13A1,H2AFY2"
TCGA.AM.5820	10	72191951	72363567	77	0.3961	SMALL-GAIN	FOCAL	3	"NODAL,PALD1,PRF1"
TCGA.AA.A00N.01A	10	72285697	72543019	50	0.6555	SMALL-GAIN	FOCAL	4	"ADAMTS14,PALD1,PRF1,TBATA"
TCGA.AA.A010.01A	10	72285697	72620071	58	0.5735	SMALL-GAIN	FOCAL	5	"ADAMTS14,PALD1,PRF1,SGPL1,TBATA"
TCGA.AA.A00D.01A	10	72604183	72645517	16	0.3888	SMALL-GAIN	FOCAL	2	"PCBD1,SGPL1"
TCGA.AM.5820	10	72665346	73600219	434	0.4147	SMALL-GAIN	FOCAL	6	"C10orf105,C10orf54,CDH23,PSAP,SLC29A3,UNC5B"
TCGA.CA.5254	10	73285390	73327946	26	0.5598	SMALL-GAIN	FOCAL	1	CDH23
TCGA.AA.3864	10	73392781	73431595	26	0.574	SMALL-GAIN	FOCAL	1	CDH23
TCGA.AA.A00Q.01A	10	73533055	73577149	5	0.6551	SMALL-GAIN	FOCAL	3	"C10orf54,CDH23,PSAP"
TCGA.AA.A01Q.01A	10	73857051	74034432	14	0.6696	SMALL-GAIN	FOCAL	3	"ANAPC16,ASCC1,DDIT4"
TCGA.G4.6299	10	74184399	74266217	16	0.5113	SMALL-GAIN	FOCAL	1	MICU1
TCGA.F5.6464	10	74762179	74768464	4	0.6577	SMALL-GAIN	FOCAL	1	P4HA1
TCGA.AA.A00N.01A	10	74952262	74994554	8	0.4357	SMALL-GAIN	FOCAL	1	FAM149B1
TCGA.AA.A010.01A	10	75016070	75457268	89	0.4782	SMALL-GAIN	FOCAL	8	"AGAP5,ANXA7,CFAP70,MSS51,MYOZ1,PPP3CB,SYNPO2L,USP54"
TCGA.AG.A01W.01A	10	75200417	75224267	16	0.5627	SMALL-GAIN	FOCAL	1	PPP3CB
TCGA.AG.A01W.01A	10	75232194	75246767	12	0.5904	SMALL-GAIN	FOCAL	1	PPP3CB
TCGA.AA.A00N.01A	10	75276126	75335249	16	0.607	SMALL-GAIN	FOCAL	1	USP54
TCGA.DM.A1D9	10	75424173	75698120	35	0.5029	SMALL-GAIN	FOCAL	9	"AGAP5,C10orf55,CAMK2G,CHCHD1,FUT11,NDST2,PLAU,SEC24C,ZSWIM8"
TCGA.AG.3906.01A	10	75490917	75672642	73	0.4967	SMALL-GAIN	FOCAL	8	"C10orf55,CAMK2G,CHCHD1,FUT11,NDST2,PLAU,SEC24C,ZSWIM8"
TCGA.AG.A00C.01A	10	75523200	75542805	19	0.658	SMALL-GAIN	FOCAL	3	"CHCHD1,FUT11,SEC24C"
TCGA.AG.A00C.01A	10	75548379	75676100	54	0.4123	SMALL-GAIN	FOCAL	5	"C10orf55,CAMK2G,NDST2,PLAU,ZSWIM8"
TCGA.AG.A01W.01A	10	75555876	76473555	36	0.5108	SMALL-GAIN	FOCAL	8	"ADK,AP3M1,C10orf55,CAMK2G,NDST2,PLAU,VCL,ZSWIM8"
TCGA.CA.5254	10	75836132	76079015	38	0.6232	SMALL-GAIN	FOCAL	3	"ADK,AP3M1,VCL"
TCGA.DM.A1D9	10	76133761	77445779	273	0.4581	SMALL-GAIN	FOCAL	9	"ADK,C10orf11,COMTD1,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2,ZNF503"
TCGA.AA.3941	10	76377010	77216726	172	0.4252	SMALL-GAIN	FOCAL	9	"ADK,C10orf11,COMTD1,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2,ZNF503"
TCGA.AA.3982	10	76377010	77216726	171	0.4646	SMALL-GAIN	FOCAL	9	"ADK,C10orf11,COMTD1,DUPD1,DUSP13,KAT6B,SAMD8,VDAC2,ZNF503"
TCGA.AA.A01Q.01A	10	77167012	79163578	34	0.6439	SMALL-GAIN	FOCAL	2	"C10orf11,KCNMA1"
TCGA.CK.5914.01A	10	78647003	79163578	33	0.5938	SMALL-GAIN	FOCAL	1	KCNMA1
TCGA.AA.A00N.01A	10	79570810	79793561	53	0.6561	SMALL-GAIN	FOCAL	3	"DLG5,POLR3A,RPS24"
TCGA.AG.3909.01A	10	79613062	79769575	22	0.5554	SMALL-GAIN	FOCAL	2	"DLG5,POLR3A"
TCGA.CK.5914.01A	10	79613062	79777286	26	0.5274	SMALL-GAIN	FOCAL	2	"DLG5,POLR3A"
TCGA.G4.6317	10	80244622	80670347	227	0.4278	SMALL-GAIN	FOCAL	0	None
TCGA.G4.6317	10	80685952	80704257	15	0.3951	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3530	10	80805279	81074815	136	0.4722	SMALL-GAIN	FOCAL	1	ZMIZ1
TCGA.AM.5820	10	80806443	81074969	136	0.565	SMALL-GAIN	FOCAL	1	ZMIZ1
TCGA.AM.5820	10	81134970	81228429	44	0.4033	SMALL-GAIN	FOCAL	1	ZCCHC24
TCGA.AA.A010.01A	10	81316973	82045208	52	0.6752	SMALL-GAIN	FOCAL	8	"ANXA11,MAT1A,NUTM2B,PLAC9,SFTPA1,SFTPA2,SFTPD,TMEM254"
TCGA.CA.5254	10	81815467	82255439	132	0.5458	SMALL-GAIN	FOCAL	8	"ANXA11,DYDC1,DYDC2,FAM213A,MAT1A,PLAC9,TMEM254,TSPAN14"
TCGA.AA.A00N.01A	10	81903937	82043623	23	0.6452	SMALL-GAIN	FOCAL	3	"ANXA11,MAT1A,PLAC9"
TCGA.AA.A01Q.01A	10	81926596	82182122	25	0.47	SMALL-GAIN	FOCAL	5	"ANXA11,DYDC1,DYDC2,FAM213A,MAT1A"
TCGA.AA.A00D.01A	10	82112162	82191691	9	0.4943	SMALL-GAIN	FOCAL	3	"DYDC1,DYDC2,FAM213A"
TCGA.AG.3881	10	82680503	82685061	3	0.5343	SMALL-GAIN	FOCAL	0	None
TCGA.CA.5254	10	85920084	86169470	81	0.5364	SMALL-GAIN	FOCAL	6	"C10orf99,CCSER2,CDHR1,LRIT1,LRIT2,RGR"
TCGA.CK.5914.01A	10	85996934	86018212	10	0.4841	SMALL-GAIN	FOCAL	2	"LRIT1,RGR"
TCGA.AA.A00N.01A	10	86004790	86273173	18	0.6529	SMALL-GAIN	FOCAL	2	"CCSER2,RGR"
TCGA.AA.A010.01A	10	86010061	88024417	30	0.4447	SMALL-GAIN	FOCAL	3	"CCSER2,GRID1,RGR"
TCGA.AG.3909.01A	10	86230080	88024417	19	0.5263	SMALL-GAIN	FOCAL	2	"CCSER2,GRID1"
TCGA.CA.5254	10	86410056	86528979	57	0.5373	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	10	86456462	86479803	22	0.46425	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A1HA	10	86698695	87022886	127	0.4934	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	10	88635713	88659533	4	0.3919	SMALL-GAIN	FOCAL	1	BMPR1A
TCGA.AG.A01W.01A	10	88940180	89526012	26	0.5268	SMALL-GAIN	FOCAL	5	"ATAD1,FAM35A,MINPP1,NUTM2A,PAPSS2"
TCGA.AA.A01Q.01A	10	89419666	89622219	21	0.4043	SMALL-GAIN	FOCAL	3	"ATAD1,KLLN,PAPSS2"
TCGA.AA.A00N.01A	10	89653728	90365328	23	0.4337	SMALL-GAIN	FOCAL	3	"LIPJ,PTEN,RNLS"
TCGA.AG.3909.01A	10	90682852	90732902	10	0.4139	SMALL-GAIN	FOCAL	2	"ACTA2,STAMBPL1"
TCGA.AA.A01Q.01A	10	90694928	90750557	9	0.4024	SMALL-GAIN	FOCAL	2	"ACTA2,FAS"
TCGA.AA.A00N.01A	10	91061786	91152393	9	0.6758	SMALL-GAIN	FOCAL	4	"IFIT1,IFIT1B,IFIT2,IFIT3"
TCGA.AA.3941	10	93280640	93344570	27	0.5723	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	10	93798651	94685685	142	0.4715	SMALL-GAIN	FOCAL	6	"CPEB3,EXOC6,HHEX,IDE,KIF11,MARCH5"
TCGA.AA.A01F.01A	10	94269759	94373174	14	0.4038	SMALL-GAIN	FOCAL	2	"IDE,KIF11"
TCGA.AA.A00L.01A	10	94333627	94452438	24	0.3993	SMALL-GAIN	FOCAL	3	"HHEX,IDE,KIF11"
TCGA.AA.A00Q.01A	10	94353081	94452438	23	0.4173	SMALL-GAIN	FOCAL	2	"HHEX,KIF11"
TCGA.AG.3891.01A	10	94452438	94594437	3	0.439	SMALL-GAIN	FOCAL	1	HHEX
TCGA.AA.A00N.01A	10	94653059	94707980	11	0.5708	SMALL-GAIN	FOCAL	1	EXOC6
TCGA.AA.3982	10	94705356	95417582	288	0.527	SMALL-GAIN	FOCAL	8	"CEP55,CYP26A1,CYP26C1,EXOC6,FFAR4,MYOF,PDE6C,RBP4"
TCGA.CA.5254	10	94787520	94866289	18	0.5914	SMALL-GAIN	FOCAL	3	"CYP26A1,CYP26C1,EXOC6"
TCGA.AG.3891.01A	10	94835546	95082783	10	0.5441	SMALL-GAIN	FOCAL	2	"CYP26A1,MYOF"
TCGA.CA.5254	10	94919585	95432861	236	0.4626	SMALL-GAIN	FOCAL	6	"CEP55,FFAR4,FRA10AC1,MYOF,PDE6C,RBP4"
TCGA.AG.3909.01A	10	95066641	95093466	12	0.3886	SMALL-GAIN	FOCAL	1	MYOF
TCGA.AA.A00N.01A	10	95066641	95191125	46	0.3962	SMALL-GAIN	FOCAL	1	MYOF
TCGA.AZ.4684.01A	10	95430465	95891879	24	0.4838	SMALL-GAIN	FOCAL	4	"FRA10AC1,LGI1,PLCE1,SLC35G1"
TCGA.AA.A010.01A	10	96076267	96351971	52	0.6645	SMALL-GAIN	FOCAL	4	"HELLS,NOC3L,PLCE1,TBC1D12"
TCGA.AA.A01F.01A	10	96104125	96116234	9	0.4025	SMALL-GAIN	FOCAL	1	NOC3L
TCGA.AA.A00N.01A	10	96253086	97380741	117	0.55	SMALL-GAIN	FOCAL	10	"ACSM6,ALDH18A1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,HELLS,PDLIM1,SORBS1,TBC1D12"
TCGA.AA.A01C.01A	10	96443525	96972560	39	0.6201	SMALL-GAIN	FOCAL	5	"ACSM6,CYP2C18,CYP2C19,CYP2C8,CYP2C9"
TCGA.AA.3982	10	96997819	97516763	234	0.431	SMALL-GAIN	FOCAL	5	"ALDH18A1,ENTPD1,PDLIM1,SORBS1,TCTN3"
TCGA.CA.5254	10	97180402	97323534	67	0.5561	SMALL-GAIN	FOCAL	1	SORBS1
TCGA.AA.A010.01A	10	97412994	97515904	15	0.6333	SMALL-GAIN	FOCAL	3	"ALDH18A1,ENTPD1,TCTN3"
TCGA.AA.A00L.01A	10	97442809	97515904	9	0.5687	SMALL-GAIN	FOCAL	2	"ENTPD1,TCTN3"
TCGA.AA.A010.01A	10	97804084	98064223	27	0.4367	SMALL-GAIN	FOCAL	4	"BLNK,CCNJ,DNTT,ZNF518A"
TCGA.CK.5914.01A	10	97969550	98192516	45	0.6504	SMALL-GAIN	FOCAL	4	"BLNK,DNTT,OPALIN,TLL2"
TCGA.AG.3909.01A	10	98363695	98416513	13	0.4046	SMALL-GAIN	FOCAL	1	PIK3AP1
TCGA.AA.A00N.01A	10	98363695	98480046	15	0.6404	SMALL-GAIN	FOCAL	1	PIK3AP1
TCGA.AA.A00N.01A	10	98760842	98825721	33	0.6223	SMALL-GAIN	FOCAL	1	SLIT1
TCGA.AG.3909.01A	10	98773774	98825721	23	0.3854	SMALL-GAIN	FOCAL	1	SLIT1
TCGA.AA.A01Q.01A	10	98985788	99052255	12	0.5661	SMALL-GAIN	FOCAL	1	ARHGAP19
TCGA.AG.3909.01A	10	99052255	99160799	28	0.5144	SMALL-GAIN	FOCAL	4	"ARHGAP19,FRAT1,FRAT2,RRP12"
TCGA.AA.A010.01A	10	99125878	99186013	26	0.4359	SMALL-GAIN	FOCAL	1	RRP12
TCGA.AA.A01Q.01A	10	99145625	99160799	8	0.4732	SMALL-GAIN	FOCAL	1	RRP12
TCGA.AA.A00F.01A	10	99190087	99202971	10	0.3995	SMALL-GAIN	FOCAL	2	"EXOSC1,PGAM1"
TCGA.AG.A00C.01A	10	99190087	99219381	22	0.411	SMALL-GAIN	FOCAL	4	"EXOSC1,MMS19,PGAM1,ZDHHC16"
TCGA.AG.4009.01A	10	99655000	99695880	8	0.4012	SMALL-GAIN	FOCAL	1	CRTAC1
TCGA.CA.5254	10	99910032	100167395	91	0.5097	SMALL-GAIN	FOCAL	3	"LOXL4,PYROXD2,R3HCC1L"
TCGA.CK.5914.01A	10	100242345	100503593	8	0.5552	SMALL-GAIN	FOCAL	1	HPSE2
TCGA.AA.3850	10	101220473	101912193	221	0.37985	SMALL-GAIN	FOCAL	9	"ABCC2,COX15,CPN1,CUTC,DNMBP,ENTPD7,ERLIN1,NKX2-3,SLC25A28"
TCGA.AA.A010.01A	10	101379870	101544353	34	0.4695	SMALL-GAIN	FOCAL	5	"ABCC2,COX15,CUTC,ENTPD7,SLC25A28"
TCGA.AA.A00N.01A	10	101668671	101915850	18	0.483	SMALL-GAIN	FOCAL	3	"CPN1,DNMBP,ERLIN1"
TCGA.CK.5914.01A	10	101673678	101841110	14	0.3998	SMALL-GAIN	FOCAL	2	"CPN1,DNMBP"
TCGA.AG.3906.01A	10	102048681	102052997	6	0.6421	SMALL-GAIN	FOCAL	1	PKD2L1
TCGA.AA.A00N.01A	10	102539207	102568815	5	0.5806	SMALL-GAIN	FOCAL	1	PAX2
TCGA.AG.3906.01A	10	102766195	102783644	8	0.5347	SMALL-GAIN	FOCAL	2	"LZTS2,PDZD7"
TCGA.AA.A010.01A	10	102822303	103427601	43	0.4407	SMALL-GAIN	FOCAL	7	"BTRC,DPCD,FBXW4,KAZALD1,LBX1,POLL,TLX1"
TCGA.AG.A00C.01A	10	103547071	103588785	20	0.5747	SMALL-GAIN	FOCAL	2	"KCNIP2,MGEA5"
TCGA.AA.A00N.01A	10	103649110	103771459	14	0.4275	SMALL-GAIN	FOCAL	1	C10orf76
TCGA.AG.A00C.01A	10	103783176	104019754	39	0.404	SMALL-GAIN	FOCAL	8	"C10orf76,ELOVL3,GBF1,HPS6,LDB1,NOLC1,PITX3,PPRC1"
TCGA.CK.5914.01A	10	104103778	104135982	26	0.5556	SMALL-GAIN	FOCAL	1	GBF1
TCGA.AA.A00N.01A	10	104103778	104141801	32	0.3787	SMALL-GAIN	FOCAL	1	GBF1
TCGA.AG.3891.01A	10	104155972	104181495	23	0.6663	SMALL-GAIN	FOCAL	3	"FBXL15,NFKB2,PSD"
TCGA.AG.3909.01A	10	104309680	104377000	8	0.472	SMALL-GAIN	FOCAL	1	SUFU
TCGA.AA.A010.01A	10	105791934	105891818	55	0.6672	SMALL-GAIN	FOCAL	3	"CFAP43,COL17A1,SFR1"
TCGA.AA.A02H.01A	10	105821950	105837143	9	0.4716	SMALL-GAIN	FOCAL	1	COL17A1
TCGA.AG.A00C.01A	10	105882716	105893329	7	0.5164	SMALL-GAIN	FOCAL	2	"CFAP43,SFR1"
TCGA.CK.5914.01A	10	106074148	106982847	40	0.5427	SMALL-GAIN	FOCAL	3	"CFAP58,ITPRIP,SORCS3"
TCGA.CK.5914.01A	10	108336950	108466249	19	0.5325	SMALL-GAIN	FOCAL	1	SORCS1
TCGA.AA.3941	10	109104214	109115820	6	0.6512	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	10	112072501	112607917	227	0.3813	SMALL-GAIN	FOCAL	3	"DUSP5,RBM20,SMC3"
TCGA.AA.3982	10	112115491	112281954	57	0.3899	SMALL-GAIN	FOCAL	1	DUSP5
TCGA.AA.A010.01A	10	112327483	112350118	16	0.5651	SMALL-GAIN	FOCAL	1	SMC3
TCGA.AA.A00D.01A	10	112338329	112657759	34	0.4662	SMALL-GAIN	FOCAL	3	"PDCD4,RBM20,SMC3"
TCGA.AA.3509.01A	10	112653812	114044265	34	0.5733	SMALL-GAIN	FOCAL	6	"ADRA2A,BBIP1,GPAM,PDCD4,SHOC2,TECTB"
TCGA.AA.A00N.01A	10	114043429	114574998	45	0.5055	SMALL-GAIN	FOCAL	4	"ACSL5,TECTB,VTI1A,ZDHHC6"
TCGA.AA.A00N.01A	10	114925286	115540313	76	0.6529	SMALL-GAIN	FOCAL	5	"CASP7,HABP2,NRAP,PLEKHS1,TCF7L2"
TCGA.AG.3909.01A	10	115312839	115411525	49	0.4301	SMALL-GAIN	FOCAL	2	"HABP2,NRAP"
TCGA.AA.A02H.01A	10	115347947	115388624	24	0.3927	SMALL-GAIN	FOCAL	2	"HABP2,NRAP"
TCGA.AG.3731	10	115477438	115564470	50	0.4287	SMALL-GAIN	FOCAL	2	"CASP7,PLEKHS1"
TCGA.AA.A02H.01A	10	115636243	115982299	44	0.4434	SMALL-GAIN	FOCAL	4	"ADRB1,CCDC186,NHLRC2,TDRD1"
TCGA.AA.A00N.01A	10	115643968	115905271	20	0.4328	SMALL-GAIN	FOCAL	3	"ADRB1,CCDC186,NHLRC2"
TCGA.AA.A010.01A	10	115987625	116444013	62	0.5245	SMALL-GAIN	FOCAL	4	"ABLIM1,AFAP1L2,TDRD1,VWA2"
TCGA.AG.A01W.01A	10	116052040	116060058	5	0.5966	SMALL-GAIN	FOCAL	2	"AFAP1L2,VWA2"
TCGA.AA.A00N.01A	10	116091509	118355687	131	0.5197	SMALL-GAIN	FOCAL	10	"ABLIM1,AFAP1L2,ATRNL1,CCDC172,FAM160B1,GFRA1,PNLIP,PNLIPRP1,PNLIPRP3,TRUB1"
TCGA.AA.3979	10	116125987	116390474	135	0.5356	SMALL-GAIN	FOCAL	2	"ABLIM1,AFAP1L2"
TCGA.AA.A02H.01A	10	116592950	117704138	49	0.6624	SMALL-GAIN	FOCAL	3	"ATRNL1,FAM160B1,TRUB1"
TCGA.AA.A017.01A	10	116592950	118220440	71	0.438	SMALL-GAIN	FOCAL	6	"ATRNL1,CCDC172,FAM160B1,GFRA1,PNLIPRP3,TRUB1"
TCGA.G4.6299	10	117575035	117710294	54	0.5999	SMALL-GAIN	FOCAL	1	ATRNL1
TCGA.AA.A02H.01A	10	118084465	118187449	9	0.6508	SMALL-GAIN	FOCAL	2	"CCDC172,PNLIPRP3"
TCGA.AA.A010.01A	10	118203867	118764465	84	0.6075	SMALL-GAIN	FOCAL	8	"C10orf82,ENO4,HSPA12A,KIAA1598,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3"
TCGA.AA.A01Q.01A	10	118305539	118355687	16	0.4551	SMALL-GAIN	FOCAL	2	"PNLIP,PNLIPRP1"
TCGA.A6.3808.01A	10	118661248	119017257	31	0.5638	SMALL-GAIN	FOCAL	4	"KCNK18,KIAA1598,SLC18A2,VAX1"
TCGA.AA.A01Q.01A	10	118738704	118764465	2	0.6552	SMALL-GAIN	FOCAL	1	KIAA1598
TCGA.AA.3850	10	120205288	120222501	18	0.44295	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3979	10	120502339	120706662	78	0.5962	SMALL-GAIN	FOCAL	1	CACUL1
TCGA.AG.3891.01A	10	120795502	121156146	48	0.4085	SMALL-GAIN	FOCAL	5	"EIF3A,FAM45A,GRK5,PRDX3,SFXN4"
TCGA.AA.3862.01A	10	120816225	120938184	40	0.5159	SMALL-GAIN	FOCAL	4	"EIF3A,FAM45A,PRDX3,SFXN4"
TCGA.AA.3930.01A	10	120863586	120938184	27	0.5942	SMALL-GAIN	FOCAL	3	"FAM45A,PRDX3,SFXN4"
TCGA.AG.3906.01A	10	121551027	121569561	10	0.6022	SMALL-GAIN	FOCAL	1	INPP5F
TCGA.AA.A00N.01A	10	121631991	122280435	25	0.4149	SMALL-GAIN	FOCAL	3	"MCMBP,PPAPDC1A,SEC23IP"
TCGA.AA.A010.01A	10	121689804	122643253	28	0.4678	SMALL-GAIN	FOCAL	3	"PPAPDC1A,SEC23IP,WDR11"
TCGA.EI.6508	10	121871696	121896597	26	0.5225	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	10	123239048	123324975	19	0.4668	SMALL-GAIN	FOCAL	1	FGFR2
TCGA.AG.A00C.01A	10	123673253	123733471	11	0.4677	SMALL-GAIN	FOCAL	2	"ATE1,NSMCE4A"
TCGA.AA.A010.01A	10	123734342	123846103	9	0.6548	SMALL-GAIN	FOCAL	2	"NSMCE4A,TACC2"
TCGA.AA.A00N.01A	10	123734342	124459103	112	0.4264	SMALL-GAIN	FOCAL	8	"ARMS2,BTBD16,C10orf120,DMBT1,HTRA1,NSMCE4A,PLEKHA1,TACC2"
TCGA.AA.A010.01A	10	123989819	124097465	22	0.6554	SMALL-GAIN	FOCAL	2	"BTBD16,TACC2"
TCGA.AA.A010.01A	10	124266175	124594211	55	0.6506	SMALL-GAIN	FOCAL	4	"C10orf120,CUZD1,DMBT1,HTRA1"
TCGA.AG.A00C.01A	10	124742291	124797214	11	0.4045	SMALL-GAIN	FOCAL	3	"ACADSB,IKZF5,PSTK"
TCGA.CA.5254	10	124882580	125005372	55	0.4636	SMALL-GAIN	FOCAL	3	"BUB3,HMX2,HMX3"
TCGA.AA.A010.01A	10	125447403	125601833	12	0.6675	SMALL-GAIN	FOCAL	2	"CPXM2,GPR26"
TCGA.AA.3979	10	125528475	125821710	82	0.4718	SMALL-GAIN	FOCAL	2	"CHST15,CPXM2"
TCGA.AM.5820	10	125725602	126025240	86	0.4557	SMALL-GAIN	FOCAL	1	CHST15
TCGA.AA.A010.01A	10	125780735	125805151	5	0.477	SMALL-GAIN	FOCAL	1	CHST15
TCGA.AA.3844	10	126148935	126398926	107	0.4039	SMALL-GAIN	FOCAL	2	"FAM53B,LHPP"
TCGA.AM.5820	10	126207205	126383362	73	0.6482	SMALL-GAIN	FOCAL	2	"FAM53B,LHPP"
TCGA.AA.3877	10	126753503	126844522	47	0.442	SMALL-GAIN	FOCAL	1	CTBP2
TCGA.AG.A00C.01A	10	127495939	127529774	16	0.4501	SMALL-GAIN	FOCAL	3	"BCCIP,DHX32,UROS"
TCGA.AA.A010.01A	10	132891408	133058474	9	0.4535	SMALL-GAIN	FOCAL	1	TCERG1L
TCGA.AA.3530	10	133927232	134662463	157	0.4466	SMALL-GAIN	FOCAL	9	"C10orf91,CFAP46,DPYSL4,INPP5A,JAKMIP3,LRRC27,NKX6-2,PWWP2B,STK32C"
TCGA.DM.A1D0	10	134290543	134314226	12	0.522	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3980.01A	10	134750412	134752054	3	0.5782	SMALL-GAIN	FOCAL	1	CFAP46
TCGA.AG.3891.01A	11	214181	251490	16	0.6594	SMALL-GAIN	FOCAL	3	"PSMD13,RIC8A,SIRT3"
TCGA.AG.3906.01A	11	248714	290410	11	0.4003	SMALL-GAIN	FOCAL	3	"ATHL1,NLRP6,PSMD13"
TCGA.AG.A01L.01A	11	290410	320516	10	0.5895	SMALL-GAIN	FOCAL	5	"ATHL1,IFITM1,IFITM2,IFITM3,IFITM5"
TCGA.AG.3906.01A	11	308966	379839	6	0.3992	SMALL-GAIN	FOCAL	4	"B4GALNT4,IFITM1,IFITM2,IFITM3"
TCGA.AH.6549.01A	11	375887	379839	4	0.4524	SMALL-GAIN	FOCAL	1	B4GALNT4
TCGA.A6.3808.01A	11	644502	700565	16	0.5764	SMALL-GAIN	FOCAL	2	"DEAF1,TMEM80"
TCGA.AA.A01Q.01A	11	1017523	1260979	4	0.5637	SMALL-GAIN	FOCAL	4	"MUC2,MUC5AC,MUC5B,MUC6"
TCGA.AG.A01W.01A	11	1427515	1536648	14	0.5434	SMALL-GAIN	FOCAL	2	"BRSK2,MOB2"
TCGA.AA.A01Q.01A	11	1946236	1959607	11	0.5031	SMALL-GAIN	FOCAL	1	TNNT3
TCGA.AA.A01Q.01A	11	2017927	2191859	17	0.4621	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AA.3529	11	2087219	2241271	33	0.5416	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.G4.6295	11	2087219	2241320	34	0.3827	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AA.3531	11	2101282	2245344	30	0.5009	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AG.3727	11	2108793	2300180	38	0.5483	SMALL-GAIN	FOCAL	5	"ASCL2,IGF2,INS,INS-IGF2,TH"
TCGA.DC.5337	11	2128308	2222912	15	0.4767	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AF.A56N	11	2128308	2234168	18	0.4705	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.SS.A7HO	11	2128308	2245344	22	0.5094	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.AA.A01V	11	2128308	2256280	24	0.535	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.EF.5830	11	2128308	2310604	41	0.6496	SMALL-GAIN	FOCAL	5	"ASCL2,IGF2,INS,INS-IGF2,TH"
TCGA.AA.3819	11	2156212	2297614	29	0.6045	SMALL-GAIN	FOCAL	5	"ASCL2,IGF2,INS,INS-IGF2,TH"
TCGA.CA.6715	11	2156535	2256280	19	0.503	SMALL-GAIN	FOCAL	4	"IGF2,INS,INS-IGF2,TH"
TCGA.5M.AAT5	11	2245344	2270240	7	0.6698	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	3707171	3792938	23	0.3813	SMALL-GAIN	FOCAL	1	NUP98
TCGA.AG.3611.01A	11	3740595	3800106	15	0.5397	SMALL-GAIN	FOCAL	1	NUP98
TCGA.AG.3909.01A	11	3848843	4112490	13	0.4602	SMALL-GAIN	FOCAL	2	"RHOG,STIM1"
TCGA.AA.3848	11	4772796	4925166	74	0.383	SMALL-GAIN	FOCAL	5	"OR51F1,OR51F2,OR51S1,OR51T1,OR52R1"
TCGA.AA.A00L.01A	11	5625712	5663589	11	0.3932	SMALL-GAIN	FOCAL	3	"TRIM34,TRIM6,TRIM6-TRIM34"
TCGA.CK.5914.01A	11	5757755	5905491	8	0.4481	SMALL-GAIN	FOCAL	7	"OR52E6,OR52E8,OR52N1,OR52N2,OR52N4,OR52N5,OR56B1"
TCGA.AA.A01Q.01A	11	6128957	6240140	12	0.6183	SMALL-GAIN	FOCAL	5	"C11orf42,FAM160A2,OR52B2,OR52W1,OR56B4"
TCGA.AA.A010.01A	11	6220474	6240140	10	0.6373	SMALL-GAIN	FOCAL	3	"C11orf42,FAM160A2,OR52W1"
TCGA.AA.A01Q.01A	11	6290917	6341311	6	0.5833	SMALL-GAIN	FOCAL	2	"CCKBR,PRKCDBP"
TCGA.AG.A01W.01A	11	6368364	6373289	7	0.607	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	6503225	6566563	16	0.4515	SMALL-GAIN	FOCAL	2	"DNHD1,TIMM10B"
TCGA.CK.5914.01A	11	6519408	6577881	19	0.5649	SMALL-GAIN	FOCAL	1	DNHD1
TCGA.AG.A00C.01A	11	6549730	6639980	31	0.4603	SMALL-GAIN	FOCAL	5	"DNHD1,ILK,RRP8,TAF10,TPP1"
TCGA.AA.A010.01A	11	6559585	6592859	29	0.5805	SMALL-GAIN	FOCAL	1	DNHD1
TCGA.AG.A01L.01A	11	6643005	6655038	13	0.6773	SMALL-GAIN	FOCAL	1	DCHS1
TCGA.CK.5914.01A	11	6704326	6912828	10	0.6153	SMALL-GAIN	FOCAL	8	"MRPL17,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR6A2"
TCGA.AA.A00N.01A	11	7273370	7669586	27	0.5438	SMALL-GAIN	FOCAL	3	"OLFML1,PPFIBP2,SYT9"
TCGA.AG.A01W.01A	11	7628599	7650493	11	0.6686	SMALL-GAIN	FOCAL	1	PPFIBP2
TCGA.AA.A00F.01A	11	7669984	7693642	13	0.4689	SMALL-GAIN	FOCAL	2	"CYB5R2,PPFIBP2"
TCGA.CK.5914.01A	11	7712416	7960123	19	0.4362	SMALL-GAIN	FOCAL	5	"OR10A3,OR10A6,OR5P2,OR5P3,OVCH2"
TCGA.AG.3909.01A	11	7712416	7984754	21	0.4016	SMALL-GAIN	FOCAL	6	"NLRP10,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2"
TCGA.AA.A00N.01A	11	7717972	8008908	17	0.5403	SMALL-GAIN	FOCAL	7	"EIF3F,NLRP10,OR10A3,OR10A6,OR5P2,OR5P3,OVCH2"
TCGA.AA.A010.01A	11	7981184	8013572	5	0.4122	SMALL-GAIN	FOCAL	2	"EIF3F,NLRP10"
TCGA.AG.A00C.01A	11	8013266	8017443	7	0.5767	SMALL-GAIN	FOCAL	1	EIF3F
TCGA.AG.3909.01A	11	8061119	8661742	39	0.4786	SMALL-GAIN	FOCAL	5	"LMO1,RIC3,STK33,TRIM66,TUB"
TCGA.CK.5914.01A	11	8414020	8704703	33	0.5075	SMALL-GAIN	FOCAL	3	"RPL27A,STK33,TRIM66"
TCGA.AA.A01Q.01A	11	8640256	8704703	9	0.6009	SMALL-GAIN	FOCAL	2	"RPL27A,TRIM66"
TCGA.AA.A010.01A	11	8640256	8953647	52	0.5602	SMALL-GAIN	FOCAL	5	"AKIP1,C11orf16,RPL27A,ST5,TRIM66"
TCGA.AA.A00F.01A	11	8933952	8942816	5	0.5457	SMALL-GAIN	FOCAL	2	"AKIP1,C11orf16"
TCGA.AA.A00N.01A	11	8947023	8959126	5	0.5056	SMALL-GAIN	FOCAL	2	"ASCL3,C11orf16"
TCGA.AA.A01Q.01A	11	8947023	8969818	6	0.5946	SMALL-GAIN	FOCAL	3	"ASCL3,C11orf16,TMEM9B"
TCGA.AA.A00F.01A	11	8974699	9009637	9	0.618	SMALL-GAIN	FOCAL	2	"NRIP3,TMEM9B"
TCGA.AA.A010.01A	11	9161181	9228180	21	0.5865	SMALL-GAIN	FOCAL	1	DENND5A
TCGA.AA.A00L.01A	11	9229092	9549020	44	0.4491	SMALL-GAIN	FOCAL	4	"DENND5A,IPO7,TMEM41B,ZNF143"
TCGA.AG.3909.01A	11	9304943	9316769	5	0.3936	SMALL-GAIN	FOCAL	1	TMEM41B
TCGA.AA.A010.01A	11	9429996	9446403	8	0.6755	SMALL-GAIN	FOCAL	1	IPO7
TCGA.AA.A010.01A	11	9499936	9595449	12	0.4884	SMALL-GAIN	FOCAL	2	"WEE1,ZNF143"
TCGA.AG.3909.01A	11	9516151	9549020	9	0.3885	SMALL-GAIN	FOCAL	1	ZNF143
TCGA.AA.A00F.01A	11	9597434	9685700	8	0.5878	SMALL-GAIN	FOCAL	2	"SWAP70,WEE1"
TCGA.AA.A00N.01A	11	9806645	10215395	36	0.6531	SMALL-GAIN	FOCAL	1	SBF2
TCGA.AA.A00Q.01A	11	10013925	10024067	6	0.4426	SMALL-GAIN	FOCAL	1	SBF2
TCGA.AA.3982	11	10458595	10865738	180	0.4038	SMALL-GAIN	FOCAL	7	"AMPD3,CTR9,EIF4G2,LYVE1,MRVI1,MTRNR2L8,RNF141"
TCGA.AG.3909.01A	11	10500066	10526044	12	0.4191	SMALL-GAIN	FOCAL	1	AMPD3
TCGA.AG.3909.01A	11	10581995	10772881	24	0.4507	SMALL-GAIN	FOCAL	3	"CTR9,LYVE1,MRVI1"
TCGA.AG.A00C.01A	11	10819294	10828721	12	0.4278	SMALL-GAIN	FOCAL	1	EIF4G2
TCGA.AA.A00F.01A	11	10819294	10874992	14	0.5916	SMALL-GAIN	FOCAL	2	"EIF4G2,ZBED5"
TCGA.F4.6459	11	11024781	11766708	538	0.5345	SMALL-GAIN	FOCAL	2	"CSNK2A3,GALNT18"
TCGA.AA.A00F.01A	11	11642869	11963831	3	0.5974	SMALL-GAIN	FOCAL	2	"GALNT18,USP47"
TCGA.AG.3906.01A	11	11944224	11971394	13	0.6362	SMALL-GAIN	FOCAL	1	USP47
TCGA.DM.A28M.01A	11	11951530	11974241	13	0.4201	SMALL-GAIN	FOCAL	1	USP47
TCGA.AA.A010.01A	11	11986024	12313699	33	0.6623	SMALL-GAIN	FOCAL	3	"DKK3,MICAL2,MICALCL"
TCGA.AG.A01W.01A	11	14492429	14813074	16	0.4624	SMALL-GAIN	FOCAL	3	"COPB1,PDE3B,PSMA1"
TCGA.AA.3509.01A	11	14632421	16766092	58	0.4933	SMALL-GAIN	FOCAL	9	"C11orf58,CALCA,CALCB,CYP2R1,INSC,LOC102724957,PDE3B,PSMA1,SOX6"
TCGA.CK.5914.01A	11	14880572	16877311	67	0.4921	SMALL-GAIN	FOCAL	9	"C11orf58,CALCA,CALCB,CYP2R1,INSC,LOC102724957,PDE3B,PLEKHA7,SOX6"
TCGA.AG.4009.01A	11	15222323	15267420	7	0.4227	SMALL-GAIN	FOCAL	1	INSC
TCGA.AG.A01Y	11	15985756	16026841	17	0.6648	SMALL-GAIN	FOCAL	1	SOX6
TCGA.AG.A01Y	11	16028674	16131215	17	0.3851	SMALL-GAIN	FOCAL	1	SOX6
TCGA.AG.3909.01A	11	16068022	16816025	21	0.4697	SMALL-GAIN	FOCAL	3	"C11orf58,PLEKHA7,SOX6"
TCGA.AG.A01Y	11	16667833	17520785	257	0.4571	SMALL-GAIN	FOCAL	9	"ABCC8,C11orf58,KCNJ11,NCR3LG1,NUCB2,PIK3C2A,PLEKHA7,RPS13,USH1C"
TCGA.AG.3611.01A	11	16760261	16776371	5	0.4356	SMALL-GAIN	FOCAL	1	C11orf58
TCGA.CK.5914.01A	11	17167165	17177070	5	0.5685	SMALL-GAIN	FOCAL	1	PIK3C2A
TCGA.AM.5820	11	17403162	17443586	25	0.4507	SMALL-GAIN	FOCAL	2	"ABCC8,KCNJ11"
TCGA.CK.5914.01A	11	17424168	17538883	43	0.5111	SMALL-GAIN	FOCAL	2	"ABCC8,USH1C"
TCGA.AM.5820	11	17510418	17834578	149	0.4045	SMALL-GAIN	FOCAL	5	"KCNC1,MYOD1,OTOG,SERGEF,USH1C"
TCGA.AA.A010.01A	11	17530862	17667070	68	0.597	SMALL-GAIN	FOCAL	2	"OTOG,USH1C"
TCGA.AA.A00Q.01A	11	17582226	17667070	5	0.5776	SMALL-GAIN	FOCAL	1	OTOG
TCGA.AG.A00C.01A	11	18022018	18062142	14	0.477	SMALL-GAIN	FOCAL	2	"SERGEF,TPH1"
TCGA.CK.5914.01A	11	18252998	18269422	7	0.6569	SMALL-GAIN	FOCAL	3	"SAA2,SAA2-SAA4,SAA4"
TCGA.AG.3906.01A	11	18288383	18312942	11	0.6747	SMALL-GAIN	FOCAL	2	"HPS5,SAA1"
TCGA.AA.A00N.01A	11	18333423	18387285	14	0.4244	SMALL-GAIN	FOCAL	2	"GTF2H1,HPS5"
TCGA.AA.3850	11	18357250	18861891	143	0.49285	SMALL-GAIN	FOCAL	10	"GTF2H1,IGSF22,LDHA,LDHAL6A,LDHC,PTPN5,SPTY2D1,TMEM86A,TSG101,UEVLD"
TCGA.AG.3909.01A	11	18357251	18387285	11	0.4032	SMALL-GAIN	FOCAL	1	GTF2H1
TCGA.AG.A00C.01A	11	18418358	18500245	21	0.3928	SMALL-GAIN	FOCAL	3	"LDHA,LDHAL6A,LDHC"
TCGA.AA.A00D.01A	11	18418358	18553830	31	0.3982	SMALL-GAIN	FOCAL	5	"LDHA,LDHAL6A,LDHC,TSG101,UEVLD"
TCGA.AG.3909.01A	11	18568388	18655683	14	0.4178	SMALL-GAIN	FOCAL	2	"SPTY2D1,UEVLD"
TCGA.AG.3611.01A	11	18631356	18722463	7	0.5488	SMALL-GAIN	FOCAL	2	"SPTY2D1,TMEM86A"
TCGA.AA.A00N.01A	11	18743051	19250979	45	0.6324	SMALL-GAIN	FOCAL	7	"CSRP3,E2F8,IGSF22,MRGPRX1,MRGPRX2,PTPN5,ZDHHC13"
TCGA.AG.A01W.01A	11	18743878	19128792	10	0.4139	SMALL-GAIN	FOCAL	4	"IGSF22,MRGPRX1,MRGPRX2,PTPN5"
TCGA.AG.3909.01A	11	18755066	19213832	33	0.497	SMALL-GAIN	FOCAL	5	"CSRP3,MRGPRX1,MRGPRX2,PTPN5,ZDHHC13"
TCGA.CK.5914.01A	11	18759372	18793399	8	0.6163	SMALL-GAIN	FOCAL	1	PTPN5
TCGA.AG.A00C.01A	11	19251734	19890416	12	0.3983	SMALL-GAIN	FOCAL	2	"E2F8,NAV2"
TCGA.AA.A010.01A	11	20112370	20122443	6	0.4343	SMALL-GAIN	FOCAL	1	NAV2
TCGA.AA.A00F.01A	11	20177711	20417317	14	0.4767	SMALL-GAIN	FOCAL	3	"DBX1,HTATIP2,PRMT3"
TCGA.AA.A010.01A	11	20385751	20411262	7	0.5149	SMALL-GAIN	FOCAL	2	"HTATIP2,PRMT3"
TCGA.AA.A00N.01A	11	20939665	22214961	16	0.6155	SMALL-GAIN	FOCAL	2	"ANO5,NELL1"
TCGA.AA.A010.01A	11	22284450	24518744	32	0.5751	SMALL-GAIN	FOCAL	7	"ANO5,CCDC179,FANCF,GAS2,LUZP2,SLC17A6,SVIP"
TCGA.AG.A00C.01A	11	22844601	24518744	4	0.4296	SMALL-GAIN	FOCAL	3	"CCDC179,LUZP2,SVIP"
TCGA.G4.6626	11	27123969	27451758	133	0.5587	SMALL-GAIN	FOCAL	3	"BBOX1,CCDC34,LGR4"
TCGA.CK.4948.01B	11	28056884	28098537	7	0.5259	SMALL-GAIN	FOCAL	1	KIF18A
TCGA.AA.A00F.01A	11	31811473	32125864	14	0.4428	SMALL-GAIN	FOCAL	2	"PAX6,RCN1"
TCGA.AG.A00C.01A	11	31811473	32125864	13	0.4533	SMALL-GAIN	FOCAL	2	"PAX6,RCN1"
TCGA.AA.A00F.01A	11	32608506	33080454	23	0.4698	SMALL-GAIN	FOCAL	6	"CCDC73,DEPDC7,EIF3M,PRRG4,QSER1,TCP11L1"
TCGA.AA.A010.01A	11	32975356	33037448	10	0.5399	SMALL-GAIN	FOCAL	2	"DEPDC7,QSER1"
TCGA.AG.A00C.01A	11	33038032	33080454	13	0.5414	SMALL-GAIN	FOCAL	2	"DEPDC7,TCP11L1"
TCGA.AA.A010.01A	11	33083024	33123675	15	0.5868	SMALL-GAIN	FOCAL	2	"CSTF3,TCP11L1"
TCGA.AA.A00N.01A	11	33083024	33374634	35	0.4185	SMALL-GAIN	FOCAL	3	"CSTF3,HIPK3,TCP11L1"
TCGA.CK.5914.01A	11	33573604	33640042	11	0.6733	SMALL-GAIN	FOCAL	1	KIAA1549L
TCGA.AA.A00F.01A	11	33731644	34104297	22	0.4545	SMALL-GAIN	FOCAL	4	"CAPRIN1,CD59,FBXO3,LMO2"
TCGA.AA.A00L.01A	11	34093253	34104297	4	0.5359	SMALL-GAIN	FOCAL	1	CAPRIN1
TCGA.AA.A00L.01A	11	34163762	34173887	4	0.6733	SMALL-GAIN	FOCAL	2	"ABTB2,NAT10"
TCGA.AA.3811	11	34187846	34369937	91	0.5025	SMALL-GAIN	FOCAL	1	ABTB2
TCGA.AG.3909.01A	11	35006089	35547001	41	0.5495	SMALL-GAIN	FOCAL	4	"CD44,PAMR1,PDHX,SLC1A2"
TCGA.DM.A1HB	11	35161669	35192628	24	0.6553	SMALL-GAIN	FOCAL	1	CD44
TCGA.D5.6534	11	37623210	38194173	155	0.6252	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	11	43867651	44207455	152	0.4199	SMALL-GAIN	FOCAL	6	"ACCS,ACCSL,ALKBH3,C11orf96,EXT2,HSD17B12"
TCGA.CM.6170	11	44192214	44240764	9	0.5921	SMALL-GAIN	FOCAL	1	EXT2
TCGA.AA.A010.01A	11	45226199	45877496	15	0.6254	SMALL-GAIN	FOCAL	5	"CHST1,CRY2,PRDM11,SLC35C1,SYT13"
TCGA.AG.A015.01A	11	45919588	45932380	12	0.4225	SMALL-GAIN	FOCAL	3	"C11orf94,MAPK8IP1,PEX16"
TCGA.AG.A01W.01A	11	46345730	46363597	17	0.6248	SMALL-GAIN	FOCAL	1	DGKZ
TCGA.AA.A00Q.01A	11	46397816	46406668	6	0.5992	SMALL-GAIN	FOCAL	3	"CHRM4,DGKZ,MDK"
TCGA.AA.A00N.01A	11	46419003	46822703	95	0.5502	SMALL-GAIN	FOCAL	7	"AMBRA1,ARHGAP1,ATG13,CKAP5,F2,HARBI1,ZNF408"
TCGA.AA.A01Q.01A	11	46430015	46569769	18	0.5704	SMALL-GAIN	FOCAL	1	AMBRA1
TCGA.CK.5914.01A	11	46430015	46690347	34	0.5705	SMALL-GAIN	FOCAL	3	"AMBRA1,ATG13,HARBI1"
TCGA.AG.A011.01A	11	46637096	46910915	97	0.4204	SMALL-GAIN	FOCAL	7	"ARHGAP1,ATG13,CKAP5,F2,HARBI1,LRP4,ZNF408"
TCGA.AG.3906.01A	11	46665820	46680891	9	0.3979	SMALL-GAIN	FOCAL	1	ATG13
TCGA.AG.A01W.01A	11	46722162	46737356	9	0.4187	SMALL-GAIN	FOCAL	2	"ARHGAP1,ZNF408"
TCGA.CK.5914.01A	11	46747357	46797766	25	0.5873	SMALL-GAIN	FOCAL	2	"CKAP5,F2"
TCGA.AG.A01W.01A	11	46872700	46880880	11	0.6075	SMALL-GAIN	FOCAL	1	LRP4
TCGA.AA.A00N.01A	11	46889480	46900421	10	0.5477	SMALL-GAIN	FOCAL	1	LRP4
TCGA.AA.A00N.01A	11	47256087	47281345	13	0.5667	SMALL-GAIN	FOCAL	3	"ACP2,DDB2,NR1H3"
TCGA.AG.3909.01A	11	47303890	47587188	80	0.39	SMALL-GAIN	FOCAL	8	"CELF1,MADD,MYBPC3,PSMC3,PTPMT1,RAPSN,SLC39A13,SPI1"
TCGA.CK.5914.01A	11	47306455	47336721	16	0.4922	SMALL-GAIN	FOCAL	1	MADD
TCGA.AM.5820	11	47354786	47434985	16	0.5552	SMALL-GAIN	FOCAL	3	"MYBPC3,SLC39A13,SPI1"
TCGA.AG.4009.01A	11	47447372	47470325	6	0.512	SMALL-GAIN	FOCAL	2	"PSMC3,RAPSN"
TCGA.AG.3906.01A	11	47592976	47600393	5	0.6754	SMALL-GAIN	FOCAL	2	"KBTBD4,PTPMT1"
TCGA.AA.A00F.01A	11	47857151	47869362	6	0.5952	SMALL-GAIN	FOCAL	1	NUP160
TCGA.AG.A00C.01A	11	47857151	47869362	6	0.5444	SMALL-GAIN	FOCAL	1	NUP160
TCGA.A6.2671	11	49146065	50751357	166	0.4757	SMALL-GAIN	FOCAL	3	"FOLH1,OR4C12,OR4C13"
TCGA.AA.3862.01A	11	56408918	56949408	8	0.5833	SMALL-GAIN	FOCAL	7	"LRRC55,OR5AK2,OR5AP2,OR5AR1,OR9G1,OR9G4,OR9G9"
TCGA.AG.4009.01A	11	56756342	57069911	11	0.5904	SMALL-GAIN	FOCAL	4	"APLNR,LRRC55,OR5AK2,TNKS1BP1"
TCGA.AA.3967.01A	11	57137310	57157298	10	0.4586	SMALL-GAIN	FOCAL	3	"P2RX3,PRG2,PRG3"
TCGA.AG.4009.01A	11	57265176	57381774	20	0.4706	SMALL-GAIN	FOCAL	5	"SERPING1,SLC43A1,SMTNL1,TIMM10,UBE2L6"
TCGA.AA.A010.01A	11	57268214	57414429	27	0.511	SMALL-GAIN	FOCAL	6	"SERPING1,SLC43A1,SMTNL1,TIMM10,UBE2L6,YPEL4"
TCGA.AG.3909.01A	11	57296138	57321878	10	0.4801	SMALL-GAIN	FOCAL	3	"SMTNL1,TIMM10,UBE2L6"
TCGA.AA.A00N.01A	11	57310096	57365595	11	0.3836	SMALL-GAIN	FOCAL	3	"SERPING1,SMTNL1,UBE2L6"
TCGA.AA.A00Q.01A	11	57506118	57575595	10	0.473	SMALL-GAIN	FOCAL	4	"BTBD18,C11orf31,CTNND1,TMX2"
TCGA.AG.A01W.01A	11	58075072	58141205	16	0.4704	SMALL-GAIN	FOCAL	1	OR5B17
TCGA.AA.A00F.01A	11	58331550	58352242	4	0.5173	SMALL-GAIN	FOCAL	2	"LPXN,ZFP91"
TCGA.AG.3909.01A	11	58377264	58491833	16	0.3881	SMALL-GAIN	FOCAL	3	"CNTF,GLYAT,ZFP91"
TCGA.CK.5914.01A	11	58377264	58491833	16	0.4606	SMALL-GAIN	FOCAL	3	"CNTF,GLYAT,ZFP91"
TCGA.AG.A00C.01A	11	58916290	58919756	3	0.6525	SMALL-GAIN	FOCAL	1	FAM111A
TCGA.AG.3909.01A	11	58940032	59282937	19	0.5182	SMALL-GAIN	FOCAL	9	"DTX4,MPEG1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1"
TCGA.CK.5914.01A	11	58959534	59282937	14	0.6168	SMALL-GAIN	FOCAL	9	"DTX4,MPEG1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1"
TCGA.AG.A00C.01A	11	59344052	59480357	27	0.4515	SMALL-GAIN	FOCAL	2	"OSBP,PATL1"
TCGA.AG.4009.01A	11	59577269	59599101	4	0.6662	SMALL-GAIN	FOCAL	2	"GIF,MRPL16"
TCGA.AA.A01Q.01A	11	59578035	59620401	11	0.6654	SMALL-GAIN	FOCAL	3	"GIF,MRPL16,TCN1"
TCGA.AG.3909.01A	11	59578035	59633808	18	0.5299	SMALL-GAIN	FOCAL	3	"GIF,MRPL16,TCN1"
TCGA.CK.5914.01A	11	59578035	59807894	19	0.6044	SMALL-GAIN	FOCAL	4	"GIF,MRPL16,OOSP2,TCN1"
TCGA.AG.3909.01A	11	60048068	60182862	21	0.4993	SMALL-GAIN	FOCAL	4	"MS4A14,MS4A4A,MS4A6E,MS4A7"
TCGA.AA.A010.01A	11	60201187	60215100	2	0.5648	SMALL-GAIN	FOCAL	1	MS4A5
TCGA.AA.A010.01A	11	60468297	60567240	18	0.5376	SMALL-GAIN	FOCAL	3	"MS4A10,MS4A15,MS4A8"
TCGA.AA.3982	11	60528161	60566457	18	0.6028	SMALL-GAIN	FOCAL	2	"MS4A10,MS4A15"
TCGA.AA.A02H.01A	11	60638383	60666582	9	0.616	SMALL-GAIN	FOCAL	2	"PRPF19,ZP1"
TCGA.AG.4009.01A	11	60739265	61050210	45	0.4424	SMALL-GAIN	FOCAL	7	"CD5,CD6,PGA3,PGA4,PGA5,VPS37C,VWCE"
TCGA.AA.A010.01A	11	60739265	61067553	52	0.3996	SMALL-GAIN	FOCAL	8	"CD5,CD6,DDB1,PGA3,PGA4,PGA5,VPS37C,VWCE"
TCGA.AA.A00N.01A	11	60785711	61040623	31	0.6091	SMALL-GAIN	FOCAL	7	"CD5,CD6,PGA3,PGA4,PGA5,VPS37C,VWCE"
TCGA.AA.A00Q.01A	11	60970968	61026115	6	0.6075	SMALL-GAIN	FOCAL	4	"PGA3,PGA4,PGA5,VWCE"
TCGA.A6.3808.01A	11	61031933	61109241	42	0.6302	SMALL-GAIN	FOCAL	3	"DDB1,TKFC,VWCE"
TCGA.AG.4009.01A	11	61089028	61178388	32	0.466	SMALL-GAIN	FOCAL	6	"CPSF7,CYB561A3,DDB1,TKFC,TMEM138,TMEM216"
TCGA.AA.A010.01A	11	61096783	61252131	46	0.4703	SMALL-GAIN	FOCAL	8	"CPSF7,CYB561A3,DDB1,PPP1R32,SDHAF2,TKFC,TMEM138,TMEM216"
TCGA.AG.3909.01A	11	61105381	61123961	16	0.5623	SMALL-GAIN	FOCAL	2	"CYB561A3,TKFC"
TCGA.AG.3906.01A	11	61205045	61545804	44	0.4011	SMALL-GAIN	FOCAL	6	"DAGLA,LRRC10B,MYRF,PPP1R32,SDHAF2,SYT7"
TCGA.AG.4009.01A	11	61205474	61290515	13	0.5379	SMALL-GAIN	FOCAL	4	"LRRC10B,PPP1R32,SDHAF2,SYT7"
TCGA.AM.5820	11	61261516	61400153	25	0.5188	SMALL-GAIN	FOCAL	2	"LRRC10B,SYT7"
TCGA.AM.5820	11	61438533	61692340	48	0.4908	SMALL-GAIN	FOCAL	8	"DAGLA,FADS1,FADS2,FADS3,FEN1,MYRF,RAB3IL1,TMEM258"
TCGA.AG.3909.01A	11	61583975	61675475	24	0.4321	SMALL-GAIN	FOCAL	4	"FADS1,FADS2,FADS3,RAB3IL1"
TCGA.AA.A010.01A	11	61734736	62012130	25	0.5524	SMALL-GAIN	FOCAL	5	"FTH1,INCENP,SCGB1D1,SCGB1D2,SCGB2A1"
TCGA.AG.4009.01A	11	61895606	62012130	22	0.5664	SMALL-GAIN	FOCAL	4	"INCENP,SCGB1D1,SCGB1D2,SCGB2A1"
TCGA.AG.3909.01A	11	61916173	62037620	13	0.5782	SMALL-GAIN	FOCAL	4	"INCENP,SCGB1D1,SCGB1D2,SCGB2A1"
TCGA.AA.3831	11	62067753	62328037	75	0.4032	SMALL-GAIN	FOCAL	4	"AHNAK,ASRGL1,EEF1G,SCGB1A1"
TCGA.AA.A010.01A	11	62105401	62284706	13	0.6101	SMALL-GAIN	FOCAL	3	"AHNAK,ASRGL1,SCGB1A1"
TCGA.AG.4009.01A	11	62105401	62361704	46	0.559	SMALL-GAIN	FOCAL	6	"AHNAK,ASRGL1,EEF1G,MTA2,SCGB1A1,TUT1"
TCGA.AA.A010.01A	11	62368810	62370584	3	0.6386	SMALL-GAIN	FOCAL	2	"EML3,MTA2"
TCGA.AG.3906.01A	11	62389278	62407082	18	0.5944	SMALL-GAIN	FOCAL	2	"B3GAT3,GANAB"
TCGA.AA.A010.01A	11	62413955	62473684	23	0.4039	SMALL-GAIN	FOCAL	9	"BSCL2,C11orf98,GANAB,INTS5,LBHD1,LRRN4CL,METTL12,UBXN1,UQCC3"
TCGA.AG.3906.01A	11	62455232	62469901	7	0.4613	SMALL-GAIN	FOCAL	2	"BSCL2,LRRN4CL"
TCGA.AG.A00C.01A	11	62546319	62744218	40	0.4277	SMALL-GAIN	FOCAL	9	"CHRM1,NXF1,SLC22A6,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,WDR74"
TCGA.AG.4009.01A	11	62606555	62782066	25	0.6637	SMALL-GAIN	FOCAL	5	"CHRM1,SLC22A6,SLC22A8,SLC3A2,WDR74"
TCGA.AG.A01W.01A	11	62619994	62933815	31	0.4559	SMALL-GAIN	FOCAL	6	"CHRM1,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC3A2"
TCGA.CK.5914.01A	11	62744218	63235781	54	0.6227	SMALL-GAIN	FOCAL	7	"HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9"
TCGA.AA.3509.01A	11	62848354	63176096	33	0.4971	SMALL-GAIN	FOCAL	4	"SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AG.3909.01A	11	62848354	63233574	33	0.4777	SMALL-GAIN	FOCAL	5	"HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AA.A01I.01A	11	62910802	63177206	27	0.6464	SMALL-GAIN	FOCAL	4	"SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AA.A010.01A	11	63233574	63486134	41	0.5547	SMALL-GAIN	FOCAL	7	"ATL3,HRASLS2,HRASLS5,LGALS12,PLA2G16,RARRES3,RTN3"
TCGA.AG.3906.01A	11	63419356	63486134	6	0.4258	SMALL-GAIN	FOCAL	2	"ATL3,RTN3"
TCGA.AG.A01W.01A	11	63524224	63641255	4	0.6496	SMALL-GAIN	FOCAL	4	"C11orf84,C11orf95,MARK2,RTN3"
TCGA.DM.A1D0	11	63552158	63641438	9	0.6697	SMALL-GAIN	FOCAL	2	"C11orf84,MARK2"
TCGA.AG.3906.01A	11	63662582	63666466	5	0.639	SMALL-GAIN	FOCAL	1	MARK2
TCGA.AG.3906.01A	11	63918682	63988461	20	0.4153	SMALL-GAIN	FOCAL	3	"FERMT3,MACROD1,STIP1"
TCGA.AG.A01W.01A	11	64263367	64279265	19	0.3956	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	11	64591887	64607974	14	0.5407	SMALL-GAIN	FOCAL	1	CDC42BPG
TCGA.AG.4009.01A	11	64627349	64764271	39	0.5194	SMALL-GAIN	FOCAL	6	"ATG2A,BATF2,C11orf85,EHD1,GPHA2,PPP2R5B"
TCGA.AF.3914.01A	11	64645616	64702492	31	0.5277	SMALL-GAIN	FOCAL	4	"ATG2A,EHD1,GPHA2,PPP2R5B"
TCGA.CK.5914.01A	11	64701172	64764271	14	0.6031	SMALL-GAIN	FOCAL	4	"BATF2,C11orf85,GPHA2,PPP2R5B"
TCGA.AG.4009.01A	11	64820642	64876018	15	0.4071	SMALL-GAIN	FOCAL	5	"CDCA5,NAALADL1,TMEM262,VPS51,ZFPL1"
TCGA.AG.4009.01A	11	64892929	64900894	7	0.4733	SMALL-GAIN	FOCAL	2	"MRPL49,SYVN1"
TCGA.AG.3891.01A	11	65004124	65123252	33	0.5417	SMALL-GAIN	FOCAL	4	"CDC42EP2,DPF2,POLA2,TIGD3"
TCGA.AG.A01L.01A	11	65293345	65306532	11	0.5296	SMALL-GAIN	FOCAL	2	"LTBP3,SCYL1"
TCGA.AG.A015.01A	11	65408375	65421828	7	0.6401	SMALL-GAIN	FOCAL	2	"RELA,SIPA1"
TCGA.AG.A01L.01A	11	65413288	65427550	10	0.4181	SMALL-GAIN	FOCAL	2	"RELA,SIPA1"
TCGA.AG.3891.01A	11	65425706	65429121	5	0.5166	SMALL-GAIN	FOCAL	1	RELA
TCGA.AG.4009.01A	11	65479690	65487548	8	0.4568	SMALL-GAIN	FOCAL	2	"KAT5,RNASEH2C"
TCGA.AG.3891.01A	11	65623369	65688301	32	0.3866	SMALL-GAIN	FOCAL	9	"C11orf68,CCDC85B,CFL1,CTSW,DRAP1,EFEMP2,FIBP,FOSL1,MUS81"
TCGA.AG.3891.01A	11	65787574	66031095	47	0.4382	SMALL-GAIN	FOCAL	5	"CATSPER1,GAL3ST3,KLC2,PACS1,SF3B2"
TCGA.AG.4009.01A	11	65960913	66026074	21	0.4961	SMALL-GAIN	FOCAL	2	"KLC2,PACS1"
TCGA.AA.A00L.01A	11	65978553	65997968	8	0.5389	SMALL-GAIN	FOCAL	1	PACS1
TCGA.AG.A015.01A	11	66026074	66050465	13	0.4114	SMALL-GAIN	FOCAL	3	"CNIH2,KLC2,RAB1B"
TCGA.AG.3906.01A	11	66082173	66131683	19	0.4403	SMALL-GAIN	FOCAL	5	"B4GAT1,BRMS1,CD248,RIN1,SLC29A2"
TCGA.AG.4009.01A	11	66241198	66318972	34	0.5403	SMALL-GAIN	FOCAL	5	"ACTN3,BBS1,DPP3,PELI3,ZDHHC24"
TCGA.A6.3808.01A	11	66249625	66323572	37	0.6044	SMALL-GAIN	FOCAL	4	"ACTN3,BBS1,DPP3,ZDHHC24"
TCGA.AG.3909.01A	11	66260957	66297259	16	0.5932	SMALL-GAIN	FOCAL	2	"BBS1,DPP3"
TCGA.AG.A015.01A	11	66328062	66335418	11	0.4846	SMALL-GAIN	FOCAL	2	"ACTN3,CTSF"
TCGA.AG.A01L.01A	11	66328062	66357900	12	0.5133	SMALL-GAIN	FOCAL	3	"ACTN3,CCDC87,CTSF"
TCGA.AG.4009.01A	11	66391304	66475581	32	0.5878	SMALL-GAIN	FOCAL	5	"RBM14,RBM14-RBM4,RBM4,RBM4B,SPTBN2"
TCGA.AA.A00N.01A	11	66391675	66411564	5	0.3842	SMALL-GAIN	FOCAL	3	"RBM14,RBM14-RBM4,RBM4"
TCGA.AF.3914.01A	11	66453312	66483274	31	0.469	SMALL-GAIN	FOCAL	1	SPTBN2
TCGA.AA.A00N.01A	11	66555584	66581289	6	0.3813	SMALL-GAIN	FOCAL	1	C11orf80
TCGA.AG.4009.01A	11	67074267	67132599	11	0.42	SMALL-GAIN	FOCAL	3	"CLCF1,POLD4,SSH3"
TCGA.AA.A010.01A	11	67414242	67434014	7	0.5368	SMALL-GAIN	FOCAL	2	"ACY3,ALDH3B2"
TCGA.D5.6898	11	67611218	68000578	45	0.6434	SMALL-GAIN	FOCAL	6	"ALDH3B1,CHKA,NDUFS8,SUV420H1,TCIRG1,UNC93B1"
TCGA.CK.5914.01A	11	67838150	67957346	15	0.4942	SMALL-GAIN	FOCAL	2	"CHKA,SUV420H1"
TCGA.AA.A00N.01A	11	68305086	68382021	24	0.5557	SMALL-GAIN	FOCAL	1	PPP6R3
TCGA.AG.A00C.01A	11	68455428	68522204	12	0.4321	SMALL-GAIN	FOCAL	3	"CPT1A,GAL,MTL5"
TCGA.AG.4009.01A	11	68542737	68582755	12	0.5172	SMALL-GAIN	FOCAL	1	CPT1A
TCGA.AG.4009.01A	11	68665346	68706982	17	0.5695	SMALL-GAIN	FOCAL	2	"IGHMBP2,MRPL21"
TCGA.AG.A00C.01A	11	69482223	69631061	8	0.5188	SMALL-GAIN	FOCAL	4	"FGF19,FGF3,FGF4,ORAOV1"
TCGA.DC.6158	11	69582522	69626917	21	0.6749	SMALL-GAIN	FOCAL	2	"FGF3,FGF4"
TCGA.DT.5265	11	70399858	70425387	10	0.5521	SMALL-GAIN	FOCAL	1	SHANK2
TCGA.DT.5265	11	70605727	70927424	104	0.4856	SMALL-GAIN	FOCAL	1	SHANK2
TCGA.AG.A01W.01A	11	71605504	71626684	19	0.5978	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	71640059	71718217	19	0.6563	SMALL-GAIN	FOCAL	3	"IL18BP,NUMA1,RNF121"
TCGA.AG.3891.01A	11	71906268	71945277	14	0.5824	SMALL-GAIN	FOCAL	3	"FOLR1,FOLR2,INPPL1"
TCGA.AG.A01L.01A	11	71939760	71952097	14	0.4731	SMALL-GAIN	FOCAL	2	"INPPL1,PHOX2A"
TCGA.AG.4009.01A	11	72004363	72145094	17	0.5509	SMALL-GAIN	FOCAL	1	CLPB
TCGA.CK.5914.01A	11	72004363	72288400	19	0.6512	SMALL-GAIN	FOCAL	2	"CLPB,PDE2A"
TCGA.AM.5820	11	72287349	72460154	38	0.6158	SMALL-GAIN	FOCAL	2	"ARAP1,PDE2A"
TCGA.CK.5914.01A	11	72307568	72342052	6	0.6533	SMALL-GAIN	FOCAL	1	PDE2A
TCGA.A6.3808.01A	11	72308517	72945193	78	0.4509	SMALL-GAIN	FOCAL	6	"ARAP1,ATG16L2,FCHSD2,P2RY2,PDE2A,STARD10"
TCGA.AG.3906.01A	11	73063837	73078598	16	0.6354	SMALL-GAIN	FOCAL	1	ARHGEF17
TCGA.AM.5820	11	73357291	73376594	14	0.4998	SMALL-GAIN	FOCAL	1	PLEKHB1
TCGA.AA.A010.01A	11	73388875	73587989	18	0.3806	SMALL-GAIN	FOCAL	4	"COA4,MRPL48,PAAF1,RAB6A"
TCGA.DC.6158	11	73552642	73630336	24	0.6558	SMALL-GAIN	FOCAL	3	"COA4,MRPL48,PAAF1"
TCGA.AG.3906.01A	11	73589748	73638282	11	0.5644	SMALL-GAIN	FOCAL	1	PAAF1
TCGA.AA.A010.01A	11	73677131	73768413	22	0.5284	SMALL-GAIN	FOCAL	4	"C2CD3,DNAJB13,UCP2,UCP3"
TCGA.AA.3831	11	73678944	74093267	97	0.3905	SMALL-GAIN	FOCAL	7	"C2CD3,DNAJB13,P4HA3,PGM2L1,PPME1,UCP2,UCP3"
TCGA.AG.3909.01A	11	73716788	73814616	22	0.56	SMALL-GAIN	FOCAL	2	"C2CD3,UCP3"
TCGA.CK.5914.01A	11	73745549	73814159	18	0.5315	SMALL-GAIN	FOCAL	1	C2CD3
TCGA.AA.A010.01A	11	73843847	73980633	24	0.5384	SMALL-GAIN	FOCAL	3	"C2CD3,P4HA3,PPME1"
TCGA.CK.5914.01A	11	73882430	73964449	14	0.5068	SMALL-GAIN	FOCAL	1	PPME1
TCGA.AG.3909.01A	11	73882430	73997236	22	0.5861	SMALL-GAIN	FOCAL	2	"P4HA3,PPME1"
TCGA.AA.A00F.01A	11	74015287	74085412	14	0.6128	SMALL-GAIN	FOCAL	2	"P4HA3,PGM2L1"
TCGA.AA.A010.01A	11	74079482	74347185	18	0.5065	SMALL-GAIN	FOCAL	4	"KCNE3,LIPT2,PGM2L1,POLD3"
TCGA.AG.4009.01A	11	74109045	74351558	14	0.4393	SMALL-GAIN	FOCAL	4	"KCNE3,LIPT2,PGM2L1,POLD3"
TCGA.AG.3906.01A	11	74407490	74429725	9	0.3928	SMALL-GAIN	FOCAL	1	CHRDL2
TCGA.AA.A010.01A	11	74500641	75000968	60	0.4921	SMALL-GAIN	FOCAL	8	"ARRB1,NEU3,OR2AT4,RNF169,SLCO2B1,SPCS2,TPBGL,XRRA1"
TCGA.AG.4009.01A	11	74500641	75000968	56	0.4948	SMALL-GAIN	FOCAL	8	"ARRB1,NEU3,OR2AT4,RNF169,SLCO2B1,SPCS2,TPBGL,XRRA1"
TCGA.AG.3909.01A	11	74554223	74660281	18	0.5364	SMALL-GAIN	FOCAL	1	XRRA1
TCGA.AG.3898	11	74746630	75086669	95	0.4362	SMALL-GAIN	FOCAL	4	"ARRB1,OR2AT4,SLCO2B1,TPBGL"
TCGA.AG.3906.01A	11	75110507	75152156	12	0.6739	SMALL-GAIN	FOCAL	3	"GDPD5,KLHL35,RPS3"
TCGA.AA.A00F.01A	11	75776707	76164299	15	0.4739	SMALL-GAIN	FOCAL	5	"C11orf30,LOC100506127,PRKRIR,UVRAG,WNT11"
TCGA.CK.5914.01A	11	76224382	76260949	12	0.5416	SMALL-GAIN	FOCAL	1	C11orf30
TCGA.CK.5914.01A	11	76709740	76731268	5	0.5138	SMALL-GAIN	FOCAL	1	ACER3
TCGA.AM.5820	11	76748181	76928024	56	0.5633	SMALL-GAIN	FOCAL	5	"B3GNT6,CAPN5,GDPD4,MYO7A,OMP"
TCGA.AG.3906.01A	11	76795906	76831730	8	0.591	SMALL-GAIN	FOCAL	2	"CAPN5,OMP"
TCGA.AG.A00C.01A	11	76841593	76873859	9	0.5381	SMALL-GAIN	FOCAL	1	MYO7A
TCGA.AA.A02K.01A	11	76888542	76903046	11	0.5467	SMALL-GAIN	FOCAL	1	MYO7A
TCGA.AA.A010.01A	11	77336710	77850486	64	0.5715	SMALL-GAIN	FOCAL	9	"AAMDC,ALG8,CLNS1A,INTS4,KCTD14,NDUFC2,NDUFC2-KCTD14,RSF1,THRSP"
TCGA.AA.A00N.01A	11	77666961	78128640	48	0.3877	SMALL-GAIN	FOCAL	9	"ALG8,GAB2,INTS4,KCTD14,KCTD21,NDUFC2,NDUFC2-KCTD14,THRSP,USP35"
TCGA.AG.3909.01A	11	77702113	77991595	40	0.4755	SMALL-GAIN	FOCAL	9	"ALG8,GAB2,INTS4,KCTD14,KCTD21,NDUFC2,NDUFC2-KCTD14,THRSP,USP35"
TCGA.AA.A010.01A	11	78176894	83170813	98	0.4369	SMALL-GAIN	FOCAL	10	"ANKRD42,CCDC90B,DDIAS,DLG2,FAM181B,NARS2,PCF11,PRCP,RAB30,TENM4"
TCGA.DY.A1DC	11	81538569	81607683	19	0.5921	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4021	11	81569925	81680387	44	0.4518	SMALL-GAIN	FOCAL	0	None
TCGA.DC.6158	11	81732386	81760104	9	0.6419	SMALL-GAIN	FOCAL	0	None
TCGA.DC.6158	11	81797830	82013506	87	0.667	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	11	81807937	81889871	26	0.5547	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	82888116	84634042	52	0.5274	SMALL-GAIN	FOCAL	4	"ANKRD42,CCDC90B,DLG2,PCF11"
TCGA.AA.A01C.01A	11	83170813	85309633	31	0.5746	SMALL-GAIN	FOCAL	1	DLG2
TCGA.CK.5914.01A	11	83177699	85309633	31	0.563	SMALL-GAIN	FOCAL	1	DLG2
TCGA.AA.A010.01A	11	85342693	85456633	31	0.676	SMALL-GAIN	FOCAL	5	"CCDC89,CREBZF,SYTL2,TMEM126A,TMEM126B"
TCGA.AA.A00N.01A	11	85374943	85468621	23	0.51	SMALL-GAIN	FOCAL	3	"CCDC89,CREBZF,SYTL2"
TCGA.AA.3527	11	85458044	85547502	28	0.5096	SMALL-GAIN	FOCAL	1	SYTL2
TCGA.AA.3930.01A	11	85593519	85670000	10	0.3974	SMALL-GAIN	FOCAL	2	"CCDC83,PICALM"
TCGA.AA.A010.01A	11	85685703	86098546	39	0.6338	SMALL-GAIN	FOCAL	4	"C11orf73,CCDC81,EED,PICALM"
TCGA.A6.3808.01A	11	86111673	86382763	23	0.4326	SMALL-GAIN	FOCAL	2	"CCDC81,ME3"
TCGA.A6.3808.01A	11	86749061	89405024	64	0.4104	SMALL-GAIN	FOCAL	7	"CTSC,FOLH1B,GRM5,NOX4,RAB38,TMEM135,TYR"
TCGA.DY.A1DC	11	87435434	87440122	9	0.6334	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	89819172	89882147	6	0.6611	SMALL-GAIN	FOCAL	2	"NAALAD2,UBTFL1"
TCGA.AA.A00D.01A	11	89939304	89955994	7	0.4397	SMALL-GAIN	FOCAL	1	CHORDC1
TCGA.AZ.4684.01A	11	89951227	93432406	70	0.4674	SMALL-GAIN	FOCAL	7	"CCDC67,CEP295,CHORDC1,FAT3,MTNR1B,SLC36A4,SMCO4"
TCGA.AG.3909.01A	11	89955994	92577062	22	0.5715	SMALL-GAIN	FOCAL	2	"CHORDC1,FAT3"
TCGA.CK.5914.01A	11	89955994	92577062	22	0.3861	SMALL-GAIN	FOCAL	2	"CHORDC1,FAT3"
TCGA.AA.3930.01A	11	93480486	93530653	14	0.3906	SMALL-GAIN	FOCAL	2	"C11orf54,MED17"
TCGA.AA.A00N.01A	11	94168950	94204688	12	0.598	SMALL-GAIN	FOCAL	1	MRE11A
TCGA.AA.A00N.01A	11	94320255	94731690	37	0.6309	SMALL-GAIN	FOCAL	4	"AMOTL1,CWC15,KDM4D,PIWIL4"
TCGA.AA.A010.01A	11	95509044	99426872	50	0.4487	SMALL-GAIN	FOCAL	7	"CCDC82,CEP57,CNTN5,FAM76B,JRKL,MAML2,MTMR2"
TCGA.AA.A00N.01A	11	95546066	101454023	105	0.6569	SMALL-GAIN	FOCAL	10	"ARHGAP42,CCDC82,CEP57,CNTN5,JRKL,MAML2,MTMR2,PGR,TMEM133,TRPC6"
TCGA.AY.4070	11	96192115	100192260	1425	0.6281	SMALL-GAIN	FOCAL	1	CNTN5
TCGA.CK.5914.01A	11	99786737	101359650	63	0.4792	SMALL-GAIN	FOCAL	5	"ARHGAP42,CNTN5,PGR,TMEM133,TRPC6"
TCGA.AA.A010.01A	11	101341862	102495876	75	0.3899	SMALL-GAIN	FOCAL	10	"ANGPTL5,BIRC2,BIRC3,C11orf70,CEP126,MMP20,MMP7,TMEM123,TRPC6,YAP1"
TCGA.CK.5914.01A	11	102033155	102100403	7	0.5505	SMALL-GAIN	FOCAL	1	YAP1
TCGA.AG.A01W.01A	11	102528079	102560797	20	0.5851	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	11	102595433	102646993	6	0.5177	SMALL-GAIN	FOCAL	2	"MMP10,MMP8"
TCGA.AA.A00N.01A	11	102651171	102936973	40	0.4928	SMALL-GAIN	FOCAL	6	"DCUN1D5,MMP1,MMP10,MMP12,MMP13,MMP3"
TCGA.CK.5914.01A	11	102713185	102743628	10	0.6627	SMALL-GAIN	FOCAL	2	"MMP12,MMP3"
TCGA.AA.A010.01A	11	102736994	102745516	6	0.5456	SMALL-GAIN	FOCAL	1	MMP12
TCGA.AA.A010.01A	11	103325862	104034523	13	0.5265	SMALL-GAIN	FOCAL	3	"DDI1,DYNC2H1,PDGFD"
TCGA.G4.6299	11	104413144	104681247	61	0.405	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	11	104815443	105929543	56	0.5872	SMALL-GAIN	FOCAL	9	"CARD16,CARD17,CARD18,CASP1,CASP4,CASP5,GRIA4,KBTBD3,MSANTD4"
TCGA.AA.A00N.01A	11	106558254	107960170	72	0.5171	SMALL-GAIN	FOCAL	8	"ALKBH8,CUL5,CWF19L2,ELMOD1,GUCY1A2,RAB39A,SLC35F2,SLN"
TCGA.CK.5914.01A	11	111558693	111590472	7	0.5917	SMALL-GAIN	FOCAL	1	SIK2
TCGA.AG.3891.01A	11	111624130	111635964	8	0.5972	SMALL-GAIN	FOCAL	1	PPP2R1B
TCGA.AG.4009.01A	11	111921944	112088437	41	0.3921	SMALL-GAIN	FOCAL	8	"BCO2,C11orf57,DLAT,IL18,PIH1D2,SDHD,TEX12,TIMM8B"
TCGA.AA.A00N.01A	11	111930629	111965512	20	0.4402	SMALL-GAIN	FOCAL	5	"C11orf57,DLAT,PIH1D2,SDHD,TIMM8B"
TCGA.AG.A00C.01A	11	112071295	112832272	13	0.5272	SMALL-GAIN	FOCAL	4	"BCO2,NCAM1,PLET1,PTS"
TCGA.AA.A00Q.01A	11	112104153	113103819	7	0.499	SMALL-GAIN	FOCAL	3	"NCAM1,PLET1,PTS"
TCGA.AA.A00N.01A	11	113073087	113105707	13	0.6481	SMALL-GAIN	FOCAL	1	NCAM1
TCGA.AG.4009.01A	11	113073087	113145938	21	0.4354	SMALL-GAIN	FOCAL	1	NCAM1
TCGA.AA.A010.01A	11	113211319	113254023	14	0.4429	SMALL-GAIN	FOCAL	1	TTC12
TCGA.AG.4009.01A	11	113233076	113560440	19	0.615	SMALL-GAIN	FOCAL	4	"ANKK1,DRD2,TMPRSS5,TTC12"
TCGA.AA.A00N.01A	11	113268622	113618941	32	0.656	SMALL-GAIN	FOCAL	4	"ANKK1,DRD2,TMPRSS5,ZW10"
TCGA.AG.4009.01A	11	113802032	113860136	15	0.6442	SMALL-GAIN	FOCAL	2	"HTR3A,HTR3B"
TCGA.AG.3909.01A	11	113934006	114271340	12	0.4671	SMALL-GAIN	FOCAL	4	"C11orf71,NNMT,RBM7,ZBTB16"
TCGA.AA.A02K.01A	11	114310200	114316650	5	0.3796	SMALL-GAIN	FOCAL	1	REXO2
TCGA.AG.3909.01A	11	114392648	116619148	21	0.5186	SMALL-GAIN	FOCAL	5	"BUD13,CADM1,NXPE1,NXPE2,NXPE4"
TCGA.CK.5914.01A	11	114392648	116619148	26	0.5266	SMALL-GAIN	FOCAL	5	"BUD13,CADM1,NXPE1,NXPE2,NXPE4"
TCGA.AA.A00Q.01A	11	114400890	114577125	5	0.5147	SMALL-GAIN	FOCAL	3	"NXPE1,NXPE2,NXPE4"
TCGA.AG.A01W.01A	11	116196776	116199003	5	0.4533	SMALL-GAIN	FOCAL	0	None
TCGA.AM.5820	11	116517967	116598987	43	0.5122	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	11	116660816	117076661	59	0.4061	SMALL-GAIN	FOCAL	9	"APOA1,APOA4,APOA5,APOC3,PAFAH1B2,PCSK7,SIDT2,SIK3,TAGLN"
TCGA.AM.5820	11	116690577	116710238	14	0.5459	SMALL-GAIN	FOCAL	3	"APOA1,APOA4,APOC3"
TCGA.AG.3909.01A	11	116717071	116827615	22	0.6072	SMALL-GAIN	FOCAL	1	SIK3
TCGA.CK.5914.01A	11	116718145	116824720	23	0.6318	SMALL-GAIN	FOCAL	1	SIK3
TCGA.AA.A00D.01A	11	116968822	117054452	11	0.3844	SMALL-GAIN	FOCAL	3	"PAFAH1B2,SIDT2,SIK3"
TCGA.AA.A010.01A	11	117049933	117073682	19	0.3976	SMALL-GAIN	FOCAL	2	"SIDT2,TAGLN"
TCGA.AM.5820	11	117053674	117095360	14	0.4831	SMALL-GAIN	FOCAL	3	"PCSK7,SIDT2,TAGLN"
TCGA.AG.3909.01A	11	117150586	117234092	23	0.469	SMALL-GAIN	FOCAL	3	"BACE1,CEP164,RNF214"
TCGA.CK.5914.01A	11	117152319	117265016	33	0.5728	SMALL-GAIN	FOCAL	3	"BACE1,CEP164,RNF214"
TCGA.AG.4009.01A	11	117222476	117988030	95	0.5356	SMALL-GAIN	FOCAL	8	"CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IL10RA,TMPRSS13,TMPRSS4"
TCGA.AG.3909.01A	11	117265581	117281481	9	0.5758	SMALL-GAIN	FOCAL	1	CEP164
TCGA.DT.5265	11	117332351	117347057	10	0.44	SMALL-GAIN	FOCAL	1	DSCAML1
TCGA.DT.5265	11	117536757	117782637	116	0.6219	SMALL-GAIN	FOCAL	5	"DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,TMPRSS13"
TCGA.AG.3909.01A	11	117695303	117799911	19	0.6052	SMALL-GAIN	FOCAL	4	"FXYD2,FXYD6,FXYD6-FXYD2,TMPRSS13"
TCGA.AM.5820	11	118002371	118053155	33	0.4665	SMALL-GAIN	FOCAL	2	"SCN2B,SCN4B"
TCGA.AG.4009.01A	11	118023272	118134738	26	0.4233	SMALL-GAIN	FOCAL	5	"AMICA1,MPZL2,MPZL3,SCN2B,SCN4B"
TCGA.AG.3909.01A	11	118038753	118186163	32	0.5788	SMALL-GAIN	FOCAL	5	"AMICA1,CD3E,MPZL2,MPZL3,SCN2B"
TCGA.AG.3906.01A	11	118177912	118219702	13	0.6774	SMALL-GAIN	FOCAL	3	"CD3D,CD3E,CD3G"
TCGA.AA.A00N.01A	11	118528962	118550205	10	0.5887	SMALL-GAIN	FOCAL	1	TREH
TCGA.AA.3518	11	118665574	118730668	13	0.6538	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A015.01A	11	118769476	118780549	6	0.4535	SMALL-GAIN	FOCAL	1	BCL9L
TCGA.AG.3891.01A	11	118828253	118951762	59	0.5382	SMALL-GAIN	FOCAL	8	"CCDC84,FOXR1,HYOU1,RPS25,SLC37A4,TRAPPC4,UPK2,VPS11"
TCGA.AA.A00D.01A	11	118849452	118916259	22	0.409	SMALL-GAIN	FOCAL	6	"CCDC84,FOXR1,HYOU1,RPS25,SLC37A4,TRAPPC4"
TCGA.AA.3930.01A	11	118916259	118951762	29	0.635	SMALL-GAIN	FOCAL	2	"HYOU1,VPS11"
TCGA.DT.5265	11	118931098	118985150	26	0.3976	SMALL-GAIN	FOCAL	5	"C2CD2L,DPAGT1,H2AFX,HMBS,VPS11"
TCGA.AA.A00Q.01A	11	118949247	118958890	4	0.5062	SMALL-GAIN	FOCAL	2	"HMBS,VPS11"
TCGA.A6.3808.01A	11	118997618	119181019	59	0.5101	SMALL-GAIN	FOCAL	7	"ABCG4,CBL,CCDC153,HINFP,MCAM,NLRX1,PDZD3"
TCGA.AG.3906.01A	11	119001388	119063811	36	0.4924	SMALL-GAIN	FOCAL	5	"ABCG4,CCDC153,HINFP,NLRX1,PDZD3"
TCGA.AG.3891.01A	11	119181019	119185166	6	0.6372	SMALL-GAIN	FOCAL	1	MCAM
TCGA.AG.4009.01A	11	119230210	120007929	24	0.4991	SMALL-GAIN	FOCAL	4	"PVRL1,THY1,TRIM29,USP2"
TCGA.AA.A010.01A	11	119234522	120081959	25	0.4018	SMALL-GAIN	FOCAL	5	"OAF,PVRL1,THY1,TRIM29,USP2"
TCGA.AG.3909.01A	11	119547775	120180087	24	0.3963	SMALL-GAIN	FOCAL	4	"OAF,POU2F3,PVRL1,TRIM29"
TCGA.AA.3982	11	120052097	120238961	74	0.4916	SMALL-GAIN	FOCAL	4	"ARHGEF12,OAF,POU2F3,TMEM136"
TCGA.AG.3906.01A	11	120096341	120117106	4	0.5513	SMALL-GAIN	FOCAL	2	"OAF,POU2F3"
TCGA.CK.5914.01A	11	120170286	120187889	8	0.5251	SMALL-GAIN	FOCAL	1	POU2F3
TCGA.AA.A010.01A	11	120276757	120316051	15	0.4326	SMALL-GAIN	FOCAL	1	ARHGEF12
TCGA.AG.3909.01A	11	120276757	120355105	38	0.4173	SMALL-GAIN	FOCAL	1	ARHGEF12
TCGA.CK.5914.01A	11	120673371	120984215	30	0.6647	SMALL-GAIN	FOCAL	3	"GRIK4,TBCEL,TECTA"
TCGA.AG.A01L.01A	11	121030817	121061378	10	0.3913	SMALL-GAIN	FOCAL	1	TECTA
TCGA.AA.A010.01A	11	121358694	122709176	63	0.5116	SMALL-GAIN	FOCAL	3	"BLID,SORL1,UBASH3B"
TCGA.CK.5914.01A	11	121485542	122680405	26	0.6596	SMALL-GAIN	FOCAL	3	"BLID,SORL1,UBASH3B"
TCGA.AG.3906.01A	11	122733111	122795564	10	0.5386	SMALL-GAIN	FOCAL	2	"C11orf63,CRTAM"
TCGA.AG.3909.01A	11	122944130	123471118	13	0.4915	SMALL-GAIN	FOCAL	2	"CLMP,GRAMD1B"
TCGA.AA.3982	11	123541617	123595926	22	0.4058	SMALL-GAIN	FOCAL	1	ZNF202
TCGA.AA.A00Q.01A	11	124095347	124252257	6	0.5233	SMALL-GAIN	FOCAL	5	"OR8D1,OR8D2,OR8G1,OR8G2,OR8G5"
TCGA.AA.A00N.01A	11	124761187	124767558	8	0.4331	SMALL-GAIN	FOCAL	1	ROBO4
TCGA.AA.A00N.01A	11	124805763	124874958	13	0.4781	SMALL-GAIN	FOCAL	2	"CCDC15,HEPACAM"
TCGA.AZ.4684.01A	11	124829664	124947074	16	0.6582	SMALL-GAIN	FOCAL	2	"CCDC15,SLC37A2"
TCGA.CK.5914.01A	11	124971986	125365176	21	0.5461	SMALL-GAIN	FOCAL	4	"FEZ1,LOC403312,PKNOX2,TMEM218"
TCGA.AA.3850	11	124998771	125590844	208	0.38475	SMALL-GAIN	FOCAL	7	"ACRV1,CHEK1,EI24,FEZ1,LOC403312,PKNOX2,STT3A"
TCGA.AG.A01W.01A	11	125001810	125012502	6	0.4943	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00L.01A	11	125483942	125514355	13	0.402	SMALL-GAIN	FOCAL	2	"CHEK1,STT3A"
TCGA.AA.A00D.01A	11	125488251	125525076	14	0.4378	SMALL-GAIN	FOCAL	2	"CHEK1,STT3A"
TCGA.AA.A010.01A	11	125496599	125514355	9	0.6091	SMALL-GAIN	FOCAL	1	CHEK1
TCGA.AG.3909.01A	11	125514355	125657970	16	0.3915	SMALL-GAIN	FOCAL	4	"ACRV1,CHEK1,PATE1,PATE2"
TCGA.AG.A00C.01A	11	125765149	125788481	8	0.418	SMALL-GAIN	FOCAL	3	"DDX25,HYLS1,PUS3"
TCGA.AG.3909.01A	11	125848142	125893236	17	0.5239	SMALL-GAIN	FOCAL	1	CDON
TCGA.CK.5914.01A	11	125848142	126073361	18	0.6327	SMALL-GAIN	FOCAL	2	"CDON,RPUSD4"
TCGA.AA.A01Q.01A	11	125850892	126162332	50	0.4542	SMALL-GAIN	FOCAL	6	"CDON,FAM118B,FOXRED1,RPUSD4,SRPR,TIRAP"
TCGA.AA.3815.01A	11	126134860	126145173	12	0.5865	SMALL-GAIN	FOCAL	2	"FOXRED1,SRPR"
TCGA.AA.A02K.01A	11	126137860	126176434	16	0.4944	SMALL-GAIN	FOCAL	4	"DCPS,FOXRED1,SRPR,TIRAP"
TCGA.AA.A010.01A	11	126275977	126870282	26	0.5773	SMALL-GAIN	FOCAL	2	"KIRREL3,ST3GAL4"
TCGA.AG.4009.01A	11	126276777	126316607	15	0.669	SMALL-GAIN	FOCAL	2	"KIRREL3,ST3GAL4"
TCGA.AG.3909.01A	11	126316607	128637966	20	0.5847	SMALL-GAIN	FOCAL	3	"ETS1,FLI1,KIRREL3"
TCGA.CK.5914.01A	11	126333034	128627970	18	0.5835	SMALL-GAIN	FOCAL	3	"ETS1,FLI1,KIRREL3"
TCGA.G4.6299	11	127900160	128129186	80	0.5666	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	11	128391751	128843977	23	0.5287	SMALL-GAIN	FOCAL	7	"ARHGAP32,C11orf45,ETS1,FLI1,KCNJ1,KCNJ5,TP53AIP1"
TCGA.AA.A010.01A	11	128963473	129827594	57	0.408	SMALL-GAIN	FOCAL	5	"ARHGAP32,BARX2,NFRKB,PRDM10,TMEM45B"
TCGA.AA.A010.01A	11	130029828	130130791	21	0.4751	SMALL-GAIN	FOCAL	2	"ST14,ZBTB44"
TCGA.AG.3909.01A	11	132016129	132526950	12	0.6714	SMALL-GAIN	FOCAL	2	"NTM,OPCML"
TCGA.DM.A28F	11	133607511	134718513	459	0.5398	SMALL-GAIN	FOCAL	10	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,SPATA19,THYN1,VPS26B"
TCGA.AM.5820	11	133768885	133838904	30	0.6067	SMALL-GAIN	FOCAL	1	IGSF9B
TCGA.AY.4070	11	133934961	134930688	432	0.5204	SMALL-GAIN	FOCAL	8	"ACAD8,B3GAT1,GLB1L2,GLB1L3,JAM3,NCAPD3,THYN1,VPS26B"
TCGA.AA.A010.01A	11	133938793	134062595	24	0.4902	SMALL-GAIN	FOCAL	2	"JAM3,NCAPD3"
TCGA.AG.3906.01A	11	134182669	134234201	9	0.6114	SMALL-GAIN	FOCAL	2	"GLB1L2,GLB1L3"
TCGA.AA.3867	11	134926753	134944769	11	0.4241	SMALL-GAIN	FOCAL	0	None
TCGA.AM.5820	12	192219	351322	61	0.4246	SMALL-GAIN	FOCAL	3	"IQSEC3,SLC6A12,SLC6A13"
TCGA.AG.A008.01A	12	247392	278126	7	0.4562	SMALL-GAIN	FOCAL	1	IQSEC3
TCGA.AG.3611.01A	12	247392	416569	39	0.3892	SMALL-GAIN	FOCAL	4	"IQSEC3,KDM5A,SLC6A12,SLC6A13"
TCGA.AG.3909.01A	12	318892	442674	33	0.4755	SMALL-GAIN	FOCAL	3	"KDM5A,SLC6A12,SLC6A13"
TCGA.CK.5914.01A	12	333526	344209	4	0.4482	SMALL-GAIN	FOCAL	1	SLC6A13
TCGA.CK.5914.01A	12	406180	420014	5	0.4589	SMALL-GAIN	FOCAL	1	KDM5A
TCGA.AA.A00L.01A	12	427220	645334	18	0.4825	SMALL-GAIN	FOCAL	3	"B4GALNT3,CCDC77,KDM5A"
TCGA.AA.A00D.01A	12	440956	550918	13	0.5647	SMALL-GAIN	FOCAL	2	"CCDC77,KDM5A"
TCGA.AA.A00A.01A	12	518471	645334	13	0.4669	SMALL-GAIN	FOCAL	2	"B4GALNT3,CCDC77"
TCGA.AA.A010.01A	12	644281	1553720	79	0.4257	SMALL-GAIN	FOCAL	5	"B4GALNT3,ERC1,NINJ2,RAD52,WNK1"
TCGA.AA.A00N.01A	12	1025461	1553720	24	0.6111	SMALL-GAIN	FOCAL	2	"ERC1,RAD52"
TCGA.AA.A00D.01A	12	1213862	1398980	12	0.4295	SMALL-GAIN	FOCAL	1	ERC1
TCGA.AA.A00A.01A	12	1213862	1599210	16	0.4492	SMALL-GAIN	FOCAL	1	ERC1
TCGA.DM.A1D7	12	2283194	2286021	5	0.6067	SMALL-GAIN	FOCAL	1	CACNA1C
TCGA.AA.3930.01A	12	2797605	3147097	57	0.465	SMALL-GAIN	FOCAL	8	"CACNA1C,FKBP4,FOXM1,ITFG2,NRIP2,RHNO1,TEAD4,TULP3"
TCGA.AA.3967.01A	12	2908962	3130962	48	0.4075	SMALL-GAIN	FOCAL	7	"FKBP4,FOXM1,ITFG2,NRIP2,RHNO1,TEAD4,TULP3"
TCGA.AG.3909.01A	12	2932909	2977681	14	0.4376	SMALL-GAIN	FOCAL	3	"FOXM1,ITFG2,NRIP2"
TCGA.AA.A010.01A	12	2939824	3031390	17	0.6008	SMALL-GAIN	FOCAL	4	"FOXM1,NRIP2,RHNO1,TULP3"
TCGA.AA.A02K.01A	12	2967835	3130963	32	0.4449	SMALL-GAIN	FOCAL	4	"FOXM1,RHNO1,TEAD4,TULP3"
TCGA.AG.A00C.01A	12	2970414	2997065	9	0.4259	SMALL-GAIN	FOCAL	2	"FOXM1,RHNO1"
TCGA.AG.3909.01A	12	3018619	3103883	11	0.4558	SMALL-GAIN	FOCAL	2	"TEAD4,TULP3"
TCGA.NH.A50U	12	3169492	4558848	647	0.6525	SMALL-GAIN	FOCAL	8	"CCND2,CRACR2A,FGF23,FGF6,PARP11,PRMT8,TIGAR,TSPAN9"
TCGA.AG.3909.01A	12	3389531	3931018	24	0.3858	SMALL-GAIN	FOCAL	4	"CRACR2A,PARP11,PRMT8,TSPAN9"
TCGA.CK.5914.01A	12	3649721	3765456	21	0.4287	SMALL-GAIN	FOCAL	2	"CRACR2A,PRMT8"
TCGA.AG.3906.01A	12	3931018	4408976	9	0.4606	SMALL-GAIN	FOCAL	2	"CCND2,PARP11"
TCGA.AG.3909.01A	12	4700320	4778854	22	0.4167	SMALL-GAIN	FOCAL	3	"AKAP3,DYRK4,NDUFA9"
TCGA.AA.3844	12	4787820	5212926	255	0.4305	SMALL-GAIN	FOCAL	5	"GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9"
TCGA.A6.3807	12	4806407	4821395	10	0.491	SMALL-GAIN	FOCAL	0	None
TCGA.G5.6641	12	5118676	5728433	406	0.6399	SMALL-GAIN	FOCAL	3	"ANO2,KCNA5,NTF3"
TCGA.CM.5349	12	5197349	5244293	35	0.6078	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	12	5220815	5224310	5	0.6112	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	12	5244293	6063973	480	0.4287	SMALL-GAIN	FOCAL	3	"ANO2,NTF3,VWF"
TCGA.D5.6541	12	5532011	5560897	16	0.5252	SMALL-GAIN	FOCAL	1	NTF3
TCGA.AG.3909.01A	12	5541413	6031759	28	0.4909	SMALL-GAIN	FOCAL	2	"ANO2,NTF3"
TCGA.AA.A00N.01A	12	5603401	6031759	27	0.5515	SMALL-GAIN	FOCAL	2	"ANO2,NTF3"
TCGA.AA.3861.01A	12	6058149	6105126	18	0.6561	SMALL-GAIN	FOCAL	1	VWF
TCGA.AG.A01L.01A	12	6100966	6132748	12	0.463	SMALL-GAIN	FOCAL	1	VWF
TCGA.AA.A00N.01A	12	6121188	6345303	36	0.4543	SMALL-GAIN	FOCAL	2	"CD9,VWF"
TCGA.AA.A010.01A	12	6472577	6604217	33	0.6011	SMALL-GAIN	FOCAL	7	"CD27,LTBR,MRPL51,NCAPD2,SCNN1A,TAPBPL,VAMP1"
TCGA.CK.5914.01A	12	6554245	6569972	12	0.5961	SMALL-GAIN	FOCAL	2	"CD27,TAPBPL"
TCGA.AA.A00A.01A	12	6619745	6630923	8	0.5972	SMALL-GAIN	FOCAL	1	NCAPD2
TCGA.G4.6626	12	6935630	7023122	22	0.5776	SMALL-GAIN	FOCAL	8	"CDCA3,GNB3,GPR162,LRRC23,P3H3,SPSB2,TPI1,USP5"
TCGA.AA.3939.01A	12	6935831	6952087	13	0.3852	SMALL-GAIN	FOCAL	3	"GNB3,GPR162,P3H3"
TCGA.AG.3906.01A	12	7045708	7060578	9	0.575	SMALL-GAIN	FOCAL	3	"ATN1,C12orf57,PTPN6"
TCGA.AA.A00D.01A	12	7053249	7092541	13	0.4319	SMALL-GAIN	FOCAL	5	"C12orf57,EMG1,LPCAT3,PHB2,PTPN6"
TCGA.AA.3815.01A	12	7083464	7088581	6	0.5753	SMALL-GAIN	FOCAL	2	"EMG1,LPCAT3"
TCGA.AG.3909.01A	12	7125527	7293786	35	0.4995	SMALL-GAIN	FOCAL	6	"C1R,C1RL,C1S,CLSTN3,LPCAT3,RBP5"
TCGA.AA.A017.01A	12	7173112	7249005	13	0.6257	SMALL-GAIN	FOCAL	3	"C1R,C1RL,C1S"
TCGA.AG.4009.01A	12	7276647	7295433	14	0.5645	SMALL-GAIN	FOCAL	2	"CLSTN3,RBP5"
TCGA.CK.5914.01A	12	7360218	7559117	31	0.4089	SMALL-GAIN	FOCAL	3	"ACSM4,CD163L1,PEX5"
TCGA.AG.3909.01A	12	7362292	7559117	27	0.5246	SMALL-GAIN	FOCAL	3	"ACSM4,CD163L1,PEX5"
TCGA.AA.A017.01A	12	7456901	7656167	43	0.5202	SMALL-GAIN	FOCAL	3	"ACSM4,CD163,CD163L1"
TCGA.AA.3509.01A	12	7479535	7633706	22	0.6238	SMALL-GAIN	FOCAL	3	"ACSM4,CD163,CD163L1"
TCGA.AZ.4684.01A	12	7479535	7655028	33	0.5058	SMALL-GAIN	FOCAL	3	"ACSM4,CD163,CD163L1"
TCGA.AA.A010.01A	12	7521924	7550822	8	0.6599	SMALL-GAIN	FOCAL	1	CD163L1
TCGA.AG.3909.01A	12	7632413	7656167	14	0.5649	SMALL-GAIN	FOCAL	1	CD163
TCGA.CK.5914.01A	12	7632413	7656167	14	0.5673	SMALL-GAIN	FOCAL	1	CD163
TCGA.AA.3941	12	7777196	7815750	15	0.4549	SMALL-GAIN	FOCAL	1	APOBEC1
TCGA.AG.3891.01A	12	7802106	8083794	37	0.4635	SMALL-GAIN	FOCAL	8	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AA.A010.01A	12	7842504	7882173	7	0.5878	SMALL-GAIN	FOCAL	3	"CLEC4C,DPPA3,GDF3"
TCGA.AA.A010.01A	12	7942162	8088527	22	0.5701	SMALL-GAIN	FOCAL	3	"NANOG,SLC2A14,SLC2A3"
TCGA.AA.A00N.01A	12	7945508	7985273	11	0.3874	SMALL-GAIN	FOCAL	2	"NANOG,SLC2A14"
TCGA.CK.5914.01A	12	7966885	8073982	10	0.5639	SMALL-GAIN	FOCAL	2	"SLC2A14,SLC2A3"
TCGA.A6.2686	12	8008131	8166717	40	0.6609	SMALL-GAIN	FOCAL	2	"SLC2A14,SLC2A3"
TCGA.AA.A01F.01A	12	8075366	8088527	8	0.4094	SMALL-GAIN	FOCAL	1	SLC2A3
TCGA.AA.3941	12	8188596	8307967	39	0.4834	SMALL-GAIN	FOCAL	4	"C3AR1,CLEC4A,FOXJ2,NECAP1"
TCGA.AA.A010.01A	12	8211281	8693275	38	0.5518	SMALL-GAIN	FOCAL	8	"C3AR1,CLEC4A,CLEC4D,CLEC4E,CLEC6A,FAM90A1,NECAP1,ZNF705A"
TCGA.AA.3941	12	8346607	8619561	38	0.3945	SMALL-GAIN	FOCAL	2	"CLEC6A,FAM90A1"
TCGA.DM.A1D7	12	8394376	8667896	39	0.5845	SMALL-GAIN	FOCAL	2	"CLEC4D,CLEC6A"
TCGA.AA.3941	12	8709586	9255459	153	0.5254	SMALL-GAIN	FOCAL	8	"A2M,A2ML1,AICDA,KLRG1,M6PR,MFAP5,PHC1,RIMKLB"
TCGA.AA.A010.01A	12	8987180	9020419	26	0.6593	SMALL-GAIN	FOCAL	1	A2ML1
TCGA.AG.3909.01A	12	8988063	9027498	30	0.672	SMALL-GAIN	FOCAL	1	A2ML1
TCGA.AG.A01L.01A	12	9004835	9008047	4	0.3958	SMALL-GAIN	FOCAL	1	A2ML1
TCGA.AA.A02K.01A	12	9026984	9075182	7	0.4346	SMALL-GAIN	FOCAL	2	"A2ML1,PHC1"
TCGA.AG.A01L.01A	12	9086449	9094365	8	0.3947	SMALL-GAIN	FOCAL	2	"M6PR,PHC1"
TCGA.AG.3909.01A	12	9142173	9161975	5	0.4454	SMALL-GAIN	FOCAL	1	KLRG1
TCGA.CK.5914.01A	12	9142173	9161975	5	0.4581	SMALL-GAIN	FOCAL	1	KLRG1
TCGA.AA.A010.01A	12	9220349	9222284	4	0.3803	SMALL-GAIN	FOCAL	1	A2M
TCGA.AA.A010.01A	12	9242922	9256796	10	0.5674	SMALL-GAIN	FOCAL	1	A2M
TCGA.AA.A00Q.01A	12	9360798	9596081	8	0.5958	SMALL-GAIN	FOCAL	1	PZP
TCGA.AA.A02H.01A	12	9980085	10251360	39	0.4167	SMALL-GAIN	FOCAL	9	"CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC9A,KLRF1,KLRF2"
TCGA.AG.A00C.01A	12	10370605	10374319	3	0.4804	SMALL-GAIN	FOCAL	1	GABARAPL1
TCGA.CK.5914.01A	12	10539465	10602438	22	0.4745	SMALL-GAIN	FOCAL	6	"KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRK1"
TCGA.AA.A02H.01A	12	10560205	10572936	10	0.5036	SMALL-GAIN	FOCAL	3	"KLRC3,KLRC4,KLRC4-KLRK1"
TCGA.AG.3909.01A	12	10765985	10787102	10	0.5452	SMALL-GAIN	FOCAL	2	"MAGOHB,STYK1"
TCGA.AA.A02H.01A	12	11420087	11463203	8	0.666	SMALL-GAIN	FOCAL	2	"PRB3,PRB4"
TCGA.F4.6805	12	11428151	11866913	149	0.5745	SMALL-GAIN	FOCAL	4	"ETV6,PRB1,PRB2,PRB4"
TCGA.AA.A00N.01A	12	12283670	12301826	7	0.6674	SMALL-GAIN	FOCAL	1	LRP6
TCGA.EI.6883	12	12953758	12995158	21	0.5022	SMALL-GAIN	FOCAL	1	DDX47
TCGA.AG.3891.01A	12	12974533	12982340	9	0.404	SMALL-GAIN	FOCAL	1	DDX47
TCGA.G4.6626	12	13849434	13892522	33	0.5108	SMALL-GAIN	FOCAL	1	GRIN2B
TCGA.CK.5914.01A	12	14975873	15038609	8	0.3953	SMALL-GAIN	FOCAL	3	"ART4,C12orf60,MGP"
TCGA.AG.3909.01A	12	14993337	15835769	70	0.381	SMALL-GAIN	FOCAL	8	"ARHGDIB,ART4,EPS8,ERP27,MGP,PDE6H,PTPRO,RERG"
TCGA.CK.5914.01A	12	15090855	15134284	10	0.5731	SMALL-GAIN	FOCAL	3	"ARHGDIB,ERP27,PDE6H"
TCGA.CK.5914.01A	12	15475602	16035591	46	0.4564	SMALL-GAIN	FOCAL	3	"EPS8,PTPRO,STRAP"
TCGA.G4.6315	12	15603023	15616543	10	0.5041	SMALL-GAIN	FOCAL	1	PTPRO
TCGA.AA.3844	12	15623516	15630989	5	0.5727	SMALL-GAIN	FOCAL	1	PTPRO
TCGA.G4.6295	12	15985741	16056221	17	0.5175	SMALL-GAIN	FOCAL	1	STRAP
TCGA.AA.A00D.01A	12	16036468	16510495	11	0.5057	SMALL-GAIN	FOCAL	4	"DERA,MGST1,SLC15A5,STRAP"
TCGA.AA.A00N.01A	12	16109842	16185437	6	0.6262	SMALL-GAIN	FOCAL	1	DERA
TCGA.CI.6620	12	16817196	17136982	75	0.3858	SMALL-GAIN	FOCAL	0	None
TCGA.D5.6539	12	17541249	17615668	23	0.5148	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	12	18691038	18892021	24	0.4219	SMALL-GAIN	FOCAL	3	"CAPZA3,PIK3C2G,PLCZ1"
TCGA.AA.A00N.01A	12	18691038	19436207	35	0.6233	SMALL-GAIN	FOCAL	4	"CAPZA3,PIK3C2G,PLCZ1,PLEKHA5"
TCGA.AA.3844	12	19085799	19836133	270	0.4913	SMALL-GAIN	FOCAL	2	"AEBP2,PLEKHA5"
TCGA.AA.3941	12	19085799	19870695	287	0.3945	SMALL-GAIN	FOCAL	2	"AEBP2,PLEKHA5"
TCGA.AA.A00D.01A	12	19282682	19518861	22	0.418	SMALL-GAIN	FOCAL	1	PLEKHA5
TCGA.AA.A00A.01A	12	19406854	19518861	20	0.4331	SMALL-GAIN	FOCAL	1	PLEKHA5
TCGA.AA.A00Q.01A	12	19407930	19518861	19	0.5166	SMALL-GAIN	FOCAL	1	PLEKHA5
TCGA.AA.A00F.01A	12	19475203	19498702	4	0.4711	SMALL-GAIN	FOCAL	1	PLEKHA5
TCGA.AA.A02K.01A	12	19489403	19592613	12	0.4921	SMALL-GAIN	FOCAL	2	"AEBP2,PLEKHA5"
TCGA.AG.3891.01A	12	19506769	19522588	6	0.3832	SMALL-GAIN	FOCAL	1	PLEKHA5
TCGA.A6.3808.01A	12	19670940	21068911	44	0.5628	SMALL-GAIN	FOCAL	4	"AEBP2,PDE3A,SLCO1B3,SLCO1C1"
TCGA.CK.5914.01A	12	21028131	21176076	13	0.4668	SMALL-GAIN	FOCAL	2	"SLCO1B3,SLCO1B7"
TCGA.AA.A00Q.01A	12	21054242	21242795	15	0.6286	SMALL-GAIN	FOCAL	2	"SLCO1B3,SLCO1B7"
TCGA.F5.6811.01A	12	21067343	21096255	5	0.6494	SMALL-GAIN	FOCAL	1	SLCO1B3
TCGA.AG.A01L.01A	12	21422432	21454053	9	0.3857	SMALL-GAIN	FOCAL	1	SLCO1A2
TCGA.AA.A00N.01A	12	21711087	21789953	13	0.5126	SMALL-GAIN	FOCAL	2	"GYS2,LDHB"
TCGA.AA.A00D.01A	12	22208036	22218018	7	0.5072	SMALL-GAIN	FOCAL	1	CMAS
TCGA.AA.3660	12	24858389	25244425	205	0.4674	SMALL-GAIN	FOCAL	3	"BCAT1,C12orf77,LRMP"
TCGA.AA.A00N.01A	12	25147150	26274961	54	0.668	SMALL-GAIN	FOCAL	8	"BHLHE41,C12orf77,CASC1,KRAS,LMNTD1,LRMP,LYRM5,RASSF8"
TCGA.AA.3660	12	25339870	25780548	182	0.5333	SMALL-GAIN	FOCAL	4	"CASC1,KRAS,LMNTD1,LYRM5"
TCGA.AA.3660	12	25865335	26485543	260	0.5593	SMALL-GAIN	FOCAL	3	"BHLHE41,RASSF8,SSPN"
TCGA.AG.3891.01A	12	26217384	26277405	6	0.3844	SMALL-GAIN	FOCAL	2	"BHLHE41,RASSF8"
TCGA.AG.3909.01A	12	26492287	26878531	53	0.4264	SMALL-GAIN	FOCAL	1	ITPR2
TCGA.AA.A00Q.01A	12	27234055	27817240	39	0.4742	SMALL-GAIN	FOCAL	5	"ARNTL2,C12orf71,PPFIBP1,SMCO2,STK38L"
TCGA.AA.A00D.01A	12	27450617	27475064	11	0.5305	SMALL-GAIN	FOCAL	1	STK38L
TCGA.CK.5914.01A	12	27521158	27529198	3	0.6283	SMALL-GAIN	FOCAL	1	ARNTL2
TCGA.AG.3909.01A	12	27521158	27863726	44	0.4096	SMALL-GAIN	FOCAL	5	"ARNTL2,MRPS35,PPFIBP1,REP15,SMCO2"
TCGA.AA.A010.01A	12	27523025	27654845	22	0.4318	SMALL-GAIN	FOCAL	2	"ARNTL2,SMCO2"
TCGA.CK.5914.01A	12	27786261	27863726	28	0.4802	SMALL-GAIN	FOCAL	3	"MRPS35,PPFIBP1,REP15"
TCGA.CK.4948.01B	12	28116260	28636935	12	0.5467	SMALL-GAIN	FOCAL	2	"CCDC91,PTHLH"
TCGA.AA.A00N.01A	12	28410066	29510504	30	0.5789	SMALL-GAIN	FOCAL	3	"CCDC91,ERGIC2,FAR2"
TCGA.CK.5914.01A	12	28458565	28701968	9	0.6777	SMALL-GAIN	FOCAL	1	CCDC91
TCGA.NH.A50U	12	28538434	28856942	127	0.6483	SMALL-GAIN	FOCAL	1	CCDC91
TCGA.AA.3509.01A	12	28636935	30893898	103	0.3861	SMALL-GAIN	FOCAL	7	"CAPRIN2,CCDC91,ERGIC2,FAR2,IPO8,OVCH1,TMTC1"
TCGA.AG.3909.01A	12	29592209	30819116	56	0.4151	SMALL-GAIN	FOCAL	3	"IPO8,OVCH1,TMTC1"
TCGA.AZ.4323	12	30344721	31038081	355	0.6199	SMALL-GAIN	FOCAL	2	"CAPRIN2,IPO8"
TCGA.AG.3602	12	30562813	30590425	13	0.5948	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	12	30730344	31049102	129	0.5652	SMALL-GAIN	FOCAL	2	"CAPRIN2,IPO8"
TCGA.AG.3881	12	31024699	31182259	97	0.4684	SMALL-GAIN	FOCAL	1	TSPAN11
TCGA.AA.3844	12	31055839	31127159	41	0.5445	SMALL-GAIN	FOCAL	1	TSPAN11
TCGA.AA.3844	12	31161022	31299352	30	0.3968	SMALL-GAIN	FOCAL	1	DDX11
TCGA.AG.3725	12	31278030	31409878	54	0.4764	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A28K	12	31348926	31402689	41	0.5079	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3881	12	31406906	32204815	249	0.5778	SMALL-GAIN	FOCAL	6	"AMN1,DENND5B,FAM60A,H3F3C,KIAA1551,METTL20"
TCGA.AA.A02K.01A	12	31542208	31566324	8	0.5868	SMALL-GAIN	FOCAL	1	DENND5B
TCGA.AF.6672	12	32337655	34244928	594	0.4915	SMALL-GAIN	FOCAL	7	"ALG10,BICD1,DNM1L,FGD4,PKP2,SYT10,YARS2"
TCGA.AG.3881	12	32378416	32907598	202	0.6212	SMALL-GAIN	FOCAL	4	"BICD1,DNM1L,FGD4,YARS2"
TCGA.D5.6537	12	34753607	38893418	102	0.3803	SMALL-GAIN	FOCAL	1	ALG10B
TCGA.CM.4744.01A	12	38710668	39154573	14	0.3866	SMALL-GAIN	FOCAL	2	"ALG10B,CPNE8"
TCGA.AA.A00D.01A	12	40740507	40761429	10	0.4463	SMALL-GAIN	FOCAL	1	LRRK2
TCGA.AA.A00N.01A	12	40787176	40812909	6	0.4479	SMALL-GAIN	FOCAL	1	MUC19
TCGA.AA.A00N.01A	12	40839274	40932521	32	0.5838	SMALL-GAIN	FOCAL	1	MUC19
TCGA.CK.5914.01A	12	40841147	40857188	8	0.559	SMALL-GAIN	FOCAL	1	MUC19
TCGA.CK.5914.01A	12	40943336	40961353	16	0.5184	SMALL-GAIN	FOCAL	1	MUC19
TCGA.DY.A1DC	12	41168248	41198903	23	0.5982	SMALL-GAIN	FOCAL	1	CNTN1
TCGA.CK.5914.01A	12	41316018	42491665	31	0.4014	SMALL-GAIN	FOCAL	3	"CNTN1,GXYLT1,PDZRN4"
TCGA.AA.3844	12	42298131	43119591	245	0.438	SMALL-GAIN	FOCAL	5	"GXYLT1,PPHLN1,PRICKLE1,YAF2,ZCRB1"
TCGA.AA.3941	12	42498399	43131207	184	0.4885	SMALL-GAIN	FOCAL	5	"GXYLT1,PPHLN1,PRICKLE1,YAF2,ZCRB1"
TCGA.AA.A00D.01A	12	42716143	42748904	5	0.6209	SMALL-GAIN	FOCAL	2	"PPHLN1,ZCRB1"
TCGA.AA.A00N.01A	12	42768648	42858175	11	0.4916	SMALL-GAIN	FOCAL	2	"PPHLN1,PRICKLE1"
TCGA.AA.A010.01A	12	42787325	42840320	6	0.6197	SMALL-GAIN	FOCAL	1	PPHLN1
TCGA.EI.6507	12	43200940	44556878	402	0.6702	SMALL-GAIN	FOCAL	5	"ADAMTS20,IRAK4,PUS7L,TMEM117,TWF1"
TCGA.AA.A02H.01A	12	43792832	43856647	17	0.6313	SMALL-GAIN	FOCAL	1	ADAMTS20
TCGA.AG.3909.01A	12	44124127	44136222	5	0.4621	SMALL-GAIN	FOCAL	1	PUS7L
TCGA.AA.A00N.01A	12	44124127	44148097	8	0.5717	SMALL-GAIN	FOCAL	1	PUS7L
TCGA.AA.3930.01A	12	44165976	44171386	4	0.5032	SMALL-GAIN	FOCAL	1	IRAK4
TCGA.AG.A00C.01A	12	44171386	44238417	14	0.4018	SMALL-GAIN	FOCAL	3	"IRAK4,TMEM117,TWF1"
TCGA.AA.A00D.01A	12	44176063	44238417	12	0.3798	SMALL-GAIN	FOCAL	3	"IRAK4,TMEM117,TWF1"
TCGA.AG.A02G.01A	12	44238417	46756020	97	0.5088	SMALL-GAIN	FOCAL	8	"ANO6,ARID2,DBX2,NELL2,SCAF11,SLC38A1,SLC38A2,TMEM117"
TCGA.AA.A00N.01A	12	44337966	46327922	83	0.5707	SMALL-GAIN	FOCAL	6	"ANO6,ARID2,DBX2,NELL2,SCAF11,TMEM117"
TCGA.AA.A010.01A	12	44902656	45822871	47	0.3839	SMALL-GAIN	FOCAL	3	"ANO6,DBX2,NELL2"
TCGA.AA.3660	12	44927339	45044835	40	0.3814	SMALL-GAIN	FOCAL	1	NELL2
TCGA.AA.3844	12	45490316	46543498	272	0.391	SMALL-GAIN	FOCAL	3	"ANO6,ARID2,SCAF11"
TCGA.AA.3509.01A	12	46316687	48081622	62	0.6418	SMALL-GAIN	FOCAL	7	"AMIGO2,PCED1B,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4"
TCGA.AA.A00D.01A	12	46754842	46764257	9	0.5022	SMALL-GAIN	FOCAL	1	SLC38A2
TCGA.AG.A01W.01A	12	47726609	47729116	4	0.6256	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A024.01A	12	48141809	48191128	25	0.5788	SMALL-GAIN	FOCAL	3	"HDAC7,RAPGEF3,SLC48A1"
TCGA.AG.A032.01A	12	48143465	48179122	6	0.5669	SMALL-GAIN	FOCAL	3	"HDAC7,RAPGEF3,SLC48A1"
TCGA.AG.3906.01A	12	48145514	48249366	22	0.6221	SMALL-GAIN	FOCAL	4	"HDAC7,RAPGEF3,SLC48A1,VDR"
TCGA.A6.3808.01A	12	48189370	48372352	33	0.5063	SMALL-GAIN	FOCAL	4	"COL2A1,HDAC7,TMEM106C,VDR"
TCGA.AA.A00N.01A	12	48367830	48383470	32	0.419	SMALL-GAIN	FOCAL	1	COL2A1
TCGA.AA.A010.01A	12	48376620	48383470	12	0.3944	SMALL-GAIN	FOCAL	1	COL2A1
TCGA.AA.A010.01A	12	48477327	48723058	30	0.4279	SMALL-GAIN	FOCAL	6	"ASB8,CCDC184,H1FNT,OR10AD1,PFKM,SENP1"
TCGA.CK.5914.01A	12	48524081	48536536	14	0.6241	SMALL-GAIN	FOCAL	1	PFKM
TCGA.AA.A010.01A	12	48888543	49110259	25	0.5006	SMALL-GAIN	FOCAL	5	"C12orf54,CCNT1,KANSL2,LALBA,OR8S1"
TCGA.AG.3891.01A	12	49073427	49317499	64	0.4894	SMALL-GAIN	FOCAL	8	"ADCY6,CACNB3,CCDC65,CCNT1,DDX23,FKBP11,KANSL2,RND1"
TCGA.AG.3909.01A	12	49162342	49212638	16	0.4521	SMALL-GAIN	FOCAL	2	"ADCY6,CACNB3"
TCGA.AG.A008.01A	12	49224886	49237674	13	0.5589	SMALL-GAIN	FOCAL	1	DDX23
TCGA.AA.A00F.01A	12	49228076	49239309	10	0.6087	SMALL-GAIN	FOCAL	1	DDX23
TCGA.AG.3909.01A	12	49251740	49259384	5	0.5922	SMALL-GAIN	FOCAL	1	RND1
TCGA.AG.3906.01A	12	49396654	49406773	7	0.6186	SMALL-GAIN	FOCAL	1	PRKAG1
TCGA.AA.A00Q.01A	12	49419948	49447751	14	0.554	SMALL-GAIN	FOCAL	1	KMT2D
TCGA.AG.3906.01A	12	49433577	49442848	12	0.5615	SMALL-GAIN	FOCAL	1	KMT2D
TCGA.AA.A010.01A	12	49878311	49893841	6	0.4392	SMALL-GAIN	FOCAL	1	SPATS2
TCGA.AG.3909.01A	12	50035664	50156566	36	0.5502	SMALL-GAIN	FOCAL	3	"FMNL3,PRPF40B,TMBIM6"
TCGA.AA.A010.01A	12	50039572	50297469	55	0.5045	SMALL-GAIN	FOCAL	5	"BCDIN3D,FAIM2,FMNL3,NCKAP5L,TMBIM6"
TCGA.AG.3611.01A	12	50146212	50189271	9	0.4763	SMALL-GAIN	FOCAL	2	"NCKAP5L,TMBIM6"
TCGA.AG.3891.01A	12	50149367	50185594	7	0.5174	SMALL-GAIN	FOCAL	2	"NCKAP5L,TMBIM6"
TCGA.AG.A01L.01A	12	50197673	50284776	10	0.3944	SMALL-GAIN	FOCAL	3	"BCDIN3D,FAIM2,NCKAP5L"
TCGA.AG.3909.01A	12	50294866	50410379	26	0.436	SMALL-GAIN	FOCAL	5	"AQP2,AQP5,AQP6,FAIM2,RACGAP1"
TCGA.CK.5914.01A	12	50368067	50400180	16	0.4327	SMALL-GAIN	FOCAL	2	"AQP6,RACGAP1"
TCGA.AG.A00C.01A	12	50452500	50492479	19	0.4852	SMALL-GAIN	FOCAL	2	"ASIC1,SMARCD1"
TCGA.AG.A01W.01A	12	50502113	50592471	7	0.4491	SMALL-GAIN	FOCAL	4	"CERS5,COX14,GPD1,LIMA1"
TCGA.AA.A00N.01A	12	50794701	50854881	11	0.4821	SMALL-GAIN	FOCAL	1	LARP4
TCGA.AG.A01W.01A	12	51580588	51630324	7	0.6463	SMALL-GAIN	FOCAL	1	POU6F1
TCGA.AA.A00N.01A	12	51733593	52174401	61	0.6288	SMALL-GAIN	FOCAL	4	"CELA1,GALNT6,SCN8A,SLC4A8"
TCGA.AG.A015.01A	12	51740318	51754456	7	0.6061	SMALL-GAIN	FOCAL	2	"CELA1,GALNT6"
TCGA.AA.A00Q.01A	12	51890759	52200016	16	0.588	SMALL-GAIN	FOCAL	2	"SCN8A,SLC4A8"
TCGA.AG.3906.01A	12	52312722	52387722	10	0.4542	SMALL-GAIN	FOCAL	2	"ACVR1B,ACVRL1"
TCGA.AG.3909.01A	12	52369062	52387722	8	0.5047	SMALL-GAIN	FOCAL	1	ACVR1B
TCGA.AG.3909.01A	12	52565135	52585355	8	0.5114	SMALL-GAIN	FOCAL	1	KRT80
TCGA.AA.A00Q.01A	12	52682106	52698667	5	0.4178	SMALL-GAIN	FOCAL	2	"KRT81,KRT86"
TCGA.AA.A01Q.01A	12	52827581	52908697	20	0.6713	SMALL-GAIN	FOCAL	5	"KRT5,KRT6A,KRT6B,KRT6C,KRT75"
TCGA.AA.A00N.01A	12	53162459	53183865	9	0.6492	SMALL-GAIN	FOCAL	2	"KRT3,KRT76"
TCGA.AG.3909.01A	12	53162459	53183865	9	0.5924	SMALL-GAIN	FOCAL	2	"KRT3,KRT76"
TCGA.AA.A00Q.01A	12	53183865	53207378	13	0.462	SMALL-GAIN	FOCAL	2	"KRT3,KRT4"
TCGA.AA.A00N.01A	12	53189215	53205500	8	0.6402	SMALL-GAIN	FOCAL	2	"KRT3,KRT4"
TCGA.CK.5914.01A	12	53201472	53293805	27	0.5915	SMALL-GAIN	FOCAL	4	"KRT4,KRT78,KRT79,KRT8"
TCGA.AA.A00N.01A	12	53237850	53293805	10	0.4452	SMALL-GAIN	FOCAL	2	"KRT78,KRT8"
TCGA.AG.A015.01A	12	53445599	53457536	18	0.6508	SMALL-GAIN	FOCAL	1	TNS2
TCGA.AG.3891.01A	12	53450742	53499285	25	0.4485	SMALL-GAIN	FOCAL	4	"IGFBP6,SOAT2,SPRYD3,TNS2"
TCGA.AA.A01Q.01A	12	53512860	53578624	19	0.4257	SMALL-GAIN	FOCAL	3	"CSAD,SOAT2,ZNF740"
TCGA.CK.5914.01A	12	53552244	53566114	10	0.4447	SMALL-GAIN	FOCAL	1	CSAD
TCGA.AA.A010.01A	12	53646613	53702453	43	0.4272	SMALL-GAIN	FOCAL	5	"AAAS,C12orf10,ESPL1,MFSD5,PFDN5"
TCGA.AG.3909.01A	12	53670366	53709078	40	0.4913	SMALL-GAIN	FOCAL	4	"AAAS,C12orf10,ESPL1,PFDN5"
TCGA.AA.A00N.01A	12	53677800	53703337	28	0.3968	SMALL-GAIN	FOCAL	4	"AAAS,C12orf10,ESPL1,PFDN5"
TCGA.AA.A010.01A	12	53800317	53824914	12	0.5804	SMALL-GAIN	FOCAL	2	"AMHR2,SP1"
TCGA.AG.3909.01A	12	53900805	54118821	32	0.463	SMALL-GAIN	FOCAL	4	"ATF7,ATP5G2,CALCOCO1,NPFF"
TCGA.AG.3909.01A	12	54674569	54756394	19	0.4708	SMALL-GAIN	FOCAL	4	"COPZ1,GPR84,HNRNPA1,NFE2"
TCGA.AG.3891.01A	12	54677545	54791101	20	0.5644	SMALL-GAIN	FOCAL	6	"COPZ1,GPR84,HNRNPA1,ITGA5,NFE2,ZNF385A"
TCGA.AA.A00N.01A	12	54901564	54921984	16	0.4581	SMALL-GAIN	FOCAL	1	NCKAP1L
TCGA.AA.A01Q.01A	12	54901564	54925532	18	0.5022	SMALL-GAIN	FOCAL	1	NCKAP1L
TCGA.AG.3909.01A	12	54903397	54925532	16	0.4754	SMALL-GAIN	FOCAL	1	NCKAP1L
TCGA.CK.5914.01A	12	54903397	54925532	16	0.5444	SMALL-GAIN	FOCAL	1	NCKAP1L
TCGA.AG.3906.01A	12	54963282	55025480	17	0.6121	SMALL-GAIN	FOCAL	3	"LACRT,PDE1B,PPP1R1A"
TCGA.AA.3696	12	54985371	55384307	153	0.5051	SMALL-GAIN	FOCAL	4	"DCD,LACRT,MUCL1,TESPA1"
TCGA.AG.A01W.01A	12	55859343	55867270	11	0.5432	SMALL-GAIN	FOCAL	1	OR6C70
TCGA.AG.3611.01A	12	56151240	56211378	11	0.4437	SMALL-GAIN	FOCAL	1	SARNP
TCGA.AG.A015.01A	12	56295648	56347956	21	0.4137	SMALL-GAIN	FOCAL	3	"DGKA,PMEL,WIBG"
TCGA.AA.A010.01A	12	56331145	56474027	51	0.4815	SMALL-GAIN	FOCAL	8	"CDK2,DGKA,ERBB3,IKZF4,PMEL,RAB5B,RPS26,SUOX"
TCGA.AG.A01L.01A	12	56347956	56355051	7	0.5022	SMALL-GAIN	FOCAL	1	PMEL
TCGA.AG.3909.01A	12	56415220	56437819	12	0.6464	SMALL-GAIN	FOCAL	2	"IKZF4,RPS26"
TCGA.AA.A00N.01A	12	56536029	56567438	25	0.4626	SMALL-GAIN	FOCAL	4	"ESYT1,MYL6,MYL6B,SMARCC2"
TCGA.AG.A015.01A	12	56565037	56580954	17	0.5255	SMALL-GAIN	FOCAL	1	SMARCC2
TCGA.AG.A016.01A	12	56577582	56580954	5	0.4765	SMALL-GAIN	FOCAL	1	SMARCC2
TCGA.AG.3891.01A	12	56604044	56648616	32	0.4593	SMALL-GAIN	FOCAL	4	"ANKRD52,NABP2,RNF41,SLC39A5"
TCGA.AA.A00N.01A	12	56720046	56827506	44	0.5209	SMALL-GAIN	FOCAL	5	"APOF,IL23A,PAN2,STAT2,TIMELESS"
TCGA.AG.3909.01A	12	56881703	56999577	24	0.6463	SMALL-GAIN	FOCAL	3	"BAZ2A,GLS2,RBMS2"
TCGA.AA.A00Q.01A	12	56993701	57178585	31	0.4206	SMALL-GAIN	FOCAL	6	"ATP5B,BAZ2A,HSD17B6,NACA,PRIM1,PTGES3"
TCGA.AA.A00F.01A	12	57005289	57065496	14	0.4478	SMALL-GAIN	FOCAL	3	"ATP5B,BAZ2A,PTGES3"
TCGA.AG.A01L.01A	12	57032058	57038903	8	0.3932	SMALL-GAIN	FOCAL	1	ATP5B
TCGA.AG.A00C.01A	12	57032869	57066460	13	0.4619	SMALL-GAIN	FOCAL	2	"ATP5B,PTGES3"
TCGA.AA.A024.01A	12	57038903	57111719	14	0.4269	SMALL-GAIN	FOCAL	3	"ATP5B,NACA,PTGES3"
TCGA.AA.A00N.01A	12	57081695	57118174	11	0.6363	SMALL-GAIN	FOCAL	2	"NACA,PTGES3"
TCGA.AA.A010.01A	12	57081695	57118174	11	0.6716	SMALL-GAIN	FOCAL	2	"NACA,PTGES3"
TCGA.AG.3909.01A	12	57106250	57112010	7	0.5512	SMALL-GAIN	FOCAL	1	NACA
TCGA.AG.A00C.01A	12	57132167	57180862	13	0.5496	SMALL-GAIN	FOCAL	2	"HSD17B6,PRIM1"
TCGA.AA.A00F.01A	12	57175711	57180862	3	0.5851	SMALL-GAIN	FOCAL	1	HSD17B6
TCGA.AA.A02H.01A	12	57317569	57350917	8	0.5665	SMALL-GAIN	FOCAL	2	"RDH16,SDR9C7"
TCGA.AG.3909.01A	12	57317569	57407056	15	0.4428	SMALL-GAIN	FOCAL	5	"GPR182,RDH16,SDR9C7,TAC3,ZBTB39"
TCGA.AG.3891.01A	12	57388944	57409441	8	0.5069	SMALL-GAIN	FOCAL	3	"GPR182,TAC3,ZBTB39"
TCGA.AG.A00H.01A	12	57422487	57458374	26	0.4857	SMALL-GAIN	FOCAL	2	"MYO1A,TMEM194A"
TCGA.AA.A02H.01A	12	57431282	57456875	16	0.5386	SMALL-GAIN	FOCAL	2	"MYO1A,TMEM194A"
TCGA.CK.4948.01B	12	57431616	57454535	14	0.4938	SMALL-GAIN	FOCAL	2	"MYO1A,TMEM194A"
TCGA.CK.5914.01A	12	57496046	57560665	25	0.5095	SMALL-GAIN	FOCAL	2	"LRP1,STAT6"
TCGA.AA.A010.01A	12	57522685	57571179	23	0.5365	SMALL-GAIN	FOCAL	1	LRP1
TCGA.AG.4009.01A	12	57556123	57574911	19	0.5937	SMALL-GAIN	FOCAL	1	LRP1
TCGA.AG.A015.01A	12	57579293	57594182	18	0.4354	SMALL-GAIN	FOCAL	1	LRP1
TCGA.CK.4948.01B	12	57652623	57663483	6	0.6152	SMALL-GAIN	FOCAL	1	R3HDM2
TCGA.AG.A015.01A	12	57861760	57870909	13	0.5491	SMALL-GAIN	FOCAL	2	"ARHGAP9,GLI1"
TCGA.AG.3891.01A	12	57882773	57883952	3	0.6185	SMALL-GAIN	FOCAL	1	MARS
TCGA.AG.A01L.01A	12	57897969	57912894	9	0.5615	SMALL-GAIN	FOCAL	2	"DDIT3,MARS"
TCGA.AG.A015.01A	12	57905474	57924416	17	0.4665	SMALL-GAIN	FOCAL	4	"DCTN2,DDIT3,MARS,MBD6"
TCGA.AG.3891.01A	12	57918037	57929251	16	0.6694	SMALL-GAIN	FOCAL	2	"DCTN2,MBD6"
TCGA.AA.A00A.01A	12	57958632	57975211	18	0.4736	SMALL-GAIN	FOCAL	1	KIF5A
TCGA.AG.3891.01A	12	58006696	58014022	11	0.5289	SMALL-GAIN	FOCAL	2	"ARHGEF25,SLC26A10"
TCGA.AA.A01Q.01A	12	58024716	58121419	16	0.3878	SMALL-GAIN	FOCAL	3	"AGAP2,B4GALNT1,OS9"
TCGA.AA.A00N.01A	12	58025700	58090016	5	0.5918	SMALL-GAIN	FOCAL	2	"B4GALNT1,OS9"
TCGA.AA.A024.01A	12	58113875	58158112	33	0.3944	SMALL-GAIN	FOCAL	6	"AGAP2,CDK4,CYP27B1,MARCH9,OS9,TSPAN31"
TCGA.AG.A008.01A	12	58121419	58145236	23	0.5475	SMALL-GAIN	FOCAL	3	"AGAP2,CDK4,TSPAN31"
TCGA.AG.3891.01A	12	58145236	58156878	4	0.5864	SMALL-GAIN	FOCAL	3	"CDK4,CYP27B1,MARCH9"
TCGA.AG.3906.01A	12	58151844	58186715	20	0.5023	SMALL-GAIN	FOCAL	5	"CYP27B1,MARCH9,METTL1,METTL21B,TSFM"
TCGA.AG.3909.01A	12	58189938	58203328	10	0.5168	SMALL-GAIN	FOCAL	2	"AVIL,TSFM"
TCGA.AA.3941	12	58478597	58522300	21	0.3893	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	12	58498925	58522132	10	0.65465	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	12	59313729	62797954	27	0.4097	SMALL-GAIN	FOCAL	4	"FAM19A2,LRIG3,SLC16A7,USP15"
TCGA.DC.6155	12	60135211	61295913	270	0.5807	SMALL-GAIN	FOCAL	1	SLC16A7
TCGA.DM.A282.01A	12	62708539	62786010	11	0.4079	SMALL-GAIN	FOCAL	1	USP15
TCGA.AA.A00N.01A	12	62996731	64038130	30	0.4107	SMALL-GAIN	FOCAL	3	"AVPR1A,DPY19L2,PPM1H"
TCGA.AA.A00L.01A	12	63974392	64040978	9	0.4526	SMALL-GAIN	FOCAL	1	DPY19L2
TCGA.A6.3808.01A	12	64061877	64803749	42	0.4828	SMALL-GAIN	FOCAL	6	"C12orf56,C12orf66,DPY19L2,SRGAP1,TMEM5,XPOT"
TCGA.AA.3930.01A	12	64178728	64383642	7	0.4112	SMALL-GAIN	FOCAL	2	"SRGAP1,TMEM5"
TCGA.AG.3909.01A	12	64377695	64536056	19	0.495	SMALL-GAIN	FOCAL	1	SRGAP1
TCGA.CK.5914.01A	12	64377695	64536056	19	0.4456	SMALL-GAIN	FOCAL	1	SRGAP1
TCGA.AA.3850	12	64463129	65269877	155	0.38935	SMALL-GAIN	FOCAL	8	"C12orf56,C12orf66,GNS,RASSF3,SRGAP1,TBC1D30,TBK1,XPOT"
TCGA.AG.3909.01A	12	64660911	64784044	11	0.4404	SMALL-GAIN	FOCAL	1	C12orf56
TCGA.A6.3808.01A	12	64858102	66218999	66	0.4614	SMALL-GAIN	FOCAL	8	"GNS,HMGA2,LEMD3,MSRB3,RASSF3,TBC1D30,TBK1,WIF1"
TCGA.AA.A00N.01A	12	64873745	65856888	62	0.4123	SMALL-GAIN	FOCAL	7	"GNS,LEMD3,MSRB3,RASSF3,TBC1D30,TBK1,WIF1"
TCGA.AG.A014.01A	12	65136912	65139385	3	0.4037	SMALL-GAIN	FOCAL	1	GNS
TCGA.AG.3909.01A	12	66696335	67663435	38	0.4268	SMALL-GAIN	FOCAL	3	"CAND1,GRIP1,HELB"
TCGA.AG.A01W.01A	12	67612714	67931130	3	0.4264	SMALL-GAIN	FOCAL	1	CAND1
TCGA.AG.A01W.01A	12	68419820	68436422	3	0.6202	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	12	68549086	69279535	76	0.4858	SMALL-GAIN	FOCAL	9	"CPM,IFNG,IL22,IL26,MDM1,MDM2,NUP107,RAP1B,SLC35E3"
TCGA.AG.3909.01A	12	68551671	68690642	11	0.5696	SMALL-GAIN	FOCAL	4	"IFNG,IL22,IL26,MDM1"
TCGA.AA.A00N.01A	12	68725916	69113070	20	0.4777	SMALL-GAIN	FOCAL	3	"MDM1,NUP107,RAP1B"
TCGA.AA.3693	12	68779599	68807831	19	0.401	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	12	69009421	69018442	6	0.5894	SMALL-GAIN	FOCAL	1	RAP1B
TCGA.AA.A00A.01A	12	69102963	69136127	18	0.382	SMALL-GAIN	FOCAL	1	NUP107
TCGA.AG.3909.01A	12	69222504	69279535	11	0.4526	SMALL-GAIN	FOCAL	2	"CPM,MDM2"
TCGA.AA.A00N.01A	12	69229606	69279535	10	0.4903	SMALL-GAIN	FOCAL	2	"CPM,MDM2"
TCGA.AA.A010.01A	12	69964061	70091389	31	0.5	SMALL-GAIN	FOCAL	4	"BEST3,CCT2,FRS2,LRRC10"
TCGA.AG.3909.01A	12	70003735	70091389	10	0.5927	SMALL-GAIN	FOCAL	2	"BEST3,LRRC10"
TCGA.CK.5914.01A	12	70003735	70091389	12	0.4167	SMALL-GAIN	FOCAL	2	"BEST3,LRRC10"
TCGA.AG.A00C.01A	12	70133552	70209089	10	0.3814	SMALL-GAIN	FOCAL	1	RAB3IP
TCGA.AA.A00N.01A	12	71029513	71314042	16	0.6198	SMALL-GAIN	FOCAL	2	"PTPRB,PTPRR"
TCGA.AG.A01Y	12	71486000	71676054	69	0.5685	SMALL-GAIN	FOCAL	1	TSPAN8
TCGA.AA.A010.01A	12	71965225	72094571	46	0.4522	SMALL-GAIN	FOCAL	4	"LGR5,THAP2,TMEM19,ZFC3H1"
TCGA.AA.A00N.01A	12	75723524	76424299	25	0.6003	SMALL-GAIN	FOCAL	6	"CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KRR1,PHLDA1"
TCGA.AA.3844	12	76045410	76272676	123	0.4353	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	12	76295969	77441364	304	0.4278	SMALL-GAIN	FOCAL	7	"BBS10,CSRP2,E2F7,NAP1L1,OSBPL8,PHLDA1,ZDHHC17"
TCGA.AA.A00N.01A	12	76739552	77436807	56	0.5676	SMALL-GAIN	FOCAL	5	"BBS10,CSRP2,E2F7,OSBPL8,ZDHHC17"
TCGA.CK.5914.01A	12	77199095	77252674	16	0.6161	SMALL-GAIN	FOCAL	2	"CSRP2,ZDHHC17"
TCGA.AZ.4684.01A	12	78593098	80722769	60	0.4759	SMALL-GAIN	FOCAL	5	"NAV3,OTOGL,PAWR,PPP1R12A,SYT1"
TCGA.CK.5914.01A	12	80655712	80671889	7	0.5391	SMALL-GAIN	FOCAL	1	OTOGL
TCGA.AG.3906.01A	12	80707249	80722769	6	0.5636	SMALL-GAIN	FOCAL	1	OTOGL
TCGA.AA.A00N.01A	12	88449313	89865893	78	0.6143	SMALL-GAIN	FOCAL	5	"CEP290,DUSP6,KITLG,POC1B,TMTC3"
TCGA.AA.3941	12	92713922	92774895	22	0.3893	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	12	93027170	94390484	401	0.3796	SMALL-GAIN	FOCAL	8	"C12orf74,CRADD,EEA1,MRPL42,NUDT4,PLEKHG7,SOCS2,UBE2N"
TCGA.AG.A01L.01A	12	93163847	93213033	17	0.3969	SMALL-GAIN	FOCAL	2	"EEA1,PLEKHG7"
TCGA.AA.3850	12	93208336	93380833	32	0.45105	SMALL-GAIN	FOCAL	1	EEA1
TCGA.AG.A01W.01A	12	93285765	93489306	9	0.4837	SMALL-GAIN	FOCAL	1	EEA1
TCGA.AA.3850	12	94890047	95095957	97	0.43085	SMALL-GAIN	FOCAL	1	TMCC3
TCGA.AA.A00L.01A	12	95869796	95906540	9	0.501	SMALL-GAIN	FOCAL	1	METAP2
TCGA.AG.A00C.01A	12	96275201	96370151	19	0.4804	SMALL-GAIN	FOCAL	3	"AMDHD1,CCDC38,HAL"
TCGA.AA.A02K.01A	12	96346469	96367984	9	0.388	SMALL-GAIN	FOCAL	2	"AMDHD1,HAL"
TCGA.AG.3909.01A	12	96617298	97158806	44	0.3898	SMALL-GAIN	FOCAL	3	"CDK17,CFAP54,ELK3"
TCGA.AA.3850	12	96907971	96944641	22	0.48025	SMALL-GAIN	FOCAL	1	CFAP54
TCGA.CK.5914.01A	12	97328704	97957564	12	0.5854	SMALL-GAIN	FOCAL	1	NEDD1
TCGA.AA.A00N.01A	12	97328704	98909619	13	0.5216	SMALL-GAIN	FOCAL	2	"NEDD1,TMPO"
TCGA.AA.3660	12	98607197	98784749	57	0.545	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	12	98774530	99388704	167	0.5362	SMALL-GAIN	FOCAL	5	"ANKS1B,APAF1,IKBIP,SLC25A3,TMPO"
TCGA.AA.A00L.01A	12	98921612	98941324	8	0.498	SMALL-GAIN	FOCAL	1	TMPO
TCGA.AG.A00C.01A	12	98991622	99071166	20	0.4057	SMALL-GAIN	FOCAL	3	"APAF1,IKBIP,SLC25A3"
TCGA.AG.3909.01A	12	99166779	100551274	51	0.452	SMALL-GAIN	FOCAL	3	"ANKS1B,FAM71C,UHRF1BP1L"
TCGA.AG.A01W.01A	12	99954936	100127410	32	0.4748	SMALL-GAIN	FOCAL	2	"ANKS1B,FAM71C"
TCGA.AG.3611.01A	12	100431372	100496493	20	0.5569	SMALL-GAIN	FOCAL	1	UHRF1BP1L
TCGA.AG.A01W.01A	12	100637985	100655725	10	0.4246	SMALL-GAIN	FOCAL	1	DEPDC4
TCGA.AA.A00L.01A	12	100926184	100955611	6	0.5655	SMALL-GAIN	FOCAL	1	NR1H4
TCGA.AG.A00C.01A	12	100930677	100988595	5	0.4529	SMALL-GAIN	FOCAL	2	"GAS2L3,NR1H4"
TCGA.AG.A01W.01A	12	101113234	101222284	7	0.6471	SMALL-GAIN	FOCAL	1	ANO4
TCGA.AG.A01L.01A	12	101487951	101581117	18	0.4285	SMALL-GAIN	FOCAL	2	"ANO4,SLC5A8"
TCGA.AA.A010.01A	12	101598214	102064042	95	0.5691	SMALL-GAIN	FOCAL	5	"ARL1,MYBPC1,SLC5A8,SPIC,UTP20"
TCGA.AA.A00N.01A	12	101603238	102071011	96	0.6018	SMALL-GAIN	FOCAL	5	"ARL1,MYBPC1,SLC5A8,SPIC,UTP20"
TCGA.AA.3844	12	101622230	102414567	269	0.5297	SMALL-GAIN	FOCAL	9	"ARL1,CCDC53,CHPT1,DRAM1,GNPTAB,MYBPC1,SPIC,SYCP3,UTP20"
TCGA.AG.3611.01A	12	101722992	101988790	40	0.5699	SMALL-GAIN	FOCAL	4	"ARL1,MYBPC1,SPIC,UTP20"
TCGA.AA.A00N.01A	12	102153761	102455639	31	0.4037	SMALL-GAIN	FOCAL	3	"CCDC53,DRAM1,GNPTAB"
TCGA.AG.3909.01A	12	102157931	102455639	27	0.4034	SMALL-GAIN	FOCAL	3	"CCDC53,DRAM1,GNPTAB"
TCGA.CK.4948.01B	12	102589119	102813237	8	0.6408	SMALL-GAIN	FOCAL	3	"IGF1,PARPBP,PMCH"
TCGA.AG.A01W.01A	12	102645119	102653353	6	0.5058	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	12	104015925	104573714	263	0.5431	SMALL-GAIN	FOCAL	8	"C12orf73,GLT8D2,HCFC2,HSP90B1,NFYB,NT5DC3,STAB2,TDG"
TCGA.AA.3941	12	104015925	104573714	263	0.4878	SMALL-GAIN	FOCAL	8	"C12orf73,GLT8D2,HCFC2,HSP90B1,NFYB,NT5DC3,STAB2,TDG"
TCGA.AG.A00Y.01A	12	104042431	104331423	73	0.4036	SMALL-GAIN	FOCAL	3	"HSP90B1,NT5DC3,STAB2"
TCGA.AA.A00N.01A	12	104054400	104133121	37	0.5638	SMALL-GAIN	FOCAL	1	STAB2
TCGA.AG.3909.01A	12	104054400	104133121	36	0.3825	SMALL-GAIN	FOCAL	1	STAB2
TCGA.AG.A01W.01A	12	104077920	104095057	9	0.6533	SMALL-GAIN	FOCAL	1	STAB2
TCGA.AG.3909.01A	12	104155061	104324219	17	0.5179	SMALL-GAIN	FOCAL	3	"HSP90B1,NT5DC3,STAB2"
TCGA.AA.A00L.01A	12	104181166	104379354	31	0.4053	SMALL-GAIN	FOCAL	4	"C12orf73,HSP90B1,NT5DC3,TDG"
TCGA.AA.A010.01A	12	104609530	104698506	7	0.6735	SMALL-GAIN	FOCAL	2	"EID3,TXNRD1"
TCGA.AA.3941	12	104645404	105168678	262	0.5413	SMALL-GAIN	FOCAL	3	"CHST11,EID3,TXNRD1"
TCGA.AG.A00C.01A	12	104682662	104732889	15	0.5384	SMALL-GAIN	FOCAL	2	"EID3,TXNRD1"
TCGA.AG.3891.01A	12	104698506	104720067	9	0.5266	SMALL-GAIN	FOCAL	2	"EID3,TXNRD1"
TCGA.AG.A00C.01A	12	105282764	105388218	7	0.3973	SMALL-GAIN	FOCAL	2	"C12orf45,SLC41A2"
TCGA.DM.A28M.01A	12	105289001	105534697	44	0.3882	SMALL-GAIN	FOCAL	4	"ALDH1L2,C12orf45,KIAA1033,SLC41A2"
TCGA.AG.A011.01A	12	105321734	105622853	70	0.3799	SMALL-GAIN	FOCAL	5	"ALDH1L2,APPL2,C12orf45,KIAA1033,SLC41A2"
TCGA.AA.A00N.01A	12	106786760	108134745	95	0.5407	SMALL-GAIN	FOCAL	9	"BTBD11,CRY1,MTERF2,POLR3B,PRDM4,PWP1,RFX4,RIC8B,TMEM263"
TCGA.AG.3909.01A	12	107391022	108685587	57	0.4577	SMALL-GAIN	FOCAL	7	"ASCL4,BTBD11,CMKLR1,CRY1,PRDM4,PWP1,WSCD2"
TCGA.AA.A010.01A	12	108954569	109211986	29	0.5631	SMALL-GAIN	FOCAL	6	"CORO1C,ISCU,SART3,SELPLG,SSH1,TMEM119"
TCGA.AG.A00C.01A	12	108957816	109051030	11	0.3805	SMALL-GAIN	FOCAL	4	"CORO1C,ISCU,SELPLG,TMEM119"
TCGA.CK.5914.01A	12	109216993	109458579	23	0.5572	SMALL-GAIN	FOCAL	3	"DAO,SSH1,SVOP"
TCGA.AA.A010.01A	12	109306271	109719181	79	0.6469	SMALL-GAIN	FOCAL	6	"ACACB,ALKBH2,FOXN4,SVOP,UNG,USP30"
TCGA.AG.3909.01A	12	109577193	109870652	70	0.4112	SMALL-GAIN	FOCAL	3	"ACACB,FOXN4,MYO1H"
TCGA.AA.A010.01A	12	109826472	109972344	61	0.5999	SMALL-GAIN	FOCAL	3	"KCTD10,MYO1H,UBE3B"
TCGA.AA.A00N.01A	12	109898404	109999187	31	0.5385	SMALL-GAIN	FOCAL	3	"KCTD10,MMAB,UBE3B"
TCGA.AA.A010.01A	12	110032813	110252229	20	0.5069	SMALL-GAIN	FOCAL	3	"FAM222A,MVK,TRPV4"
TCGA.AG.3909.01A	12	110370741	110405070	14	0.5621	SMALL-GAIN	FOCAL	1	GIT2
TCGA.AA.A00D.01A	12	110565154	110734363	14	0.6047	SMALL-GAIN	FOCAL	2	"ATP2A2,IFT81"
TCGA.AG.3909.01A	12	110760740	110811899	15	0.5905	SMALL-GAIN	FOCAL	2	"ANAPC7,ATP2A2"
TCGA.AG.4009.01A	12	110788003	110910804	26	0.3861	SMALL-GAIN	FOCAL	5	"ANAPC7,ARPC3,ATP2A2,FAM216A,GPN3"
TCGA.AG.3611.01A	12	110872900	110893353	10	0.6642	SMALL-GAIN	FOCAL	2	"ARPC3,GPN3"
TCGA.AA.A00N.01A	12	111330816	111908330	41	0.4384	SMALL-GAIN	FOCAL	6	"ATXN2,CCDC63,CUX2,FAM109A,MYL2,SH2B3"
TCGA.AG.4008	12	111825388	112038116	32	0.4523	SMALL-GAIN	FOCAL	2	"ATXN2,SH2B3"
TCGA.AG.3731	12	112098535	112437513	45	0.4518	SMALL-GAIN	FOCAL	5	"ACAD10,ALDH2,BRAP,MAPKAPK5,TMEM116"
TCGA.AA.A010.01A	12	112630827	112699070	37	0.4101	SMALL-GAIN	FOCAL	1	HECTD4
TCGA.AG.3909.01A	12	112647781	112743821	39	0.5734	SMALL-GAIN	FOCAL	1	HECTD4
TCGA.AA.A00N.01A	12	112685833	112743821	20	0.6213	SMALL-GAIN	FOCAL	1	HECTD4
TCGA.AG.A00C.01A	12	112843121	112846417	7	0.4768	SMALL-GAIN	FOCAL	1	RPL6
TCGA.AA.A010.01A	12	112856822	113376299	41	0.4247	SMALL-GAIN	FOCAL	4	"OAS1,OAS3,PTPN11,RPH3A"
TCGA.AG.3611.01A	12	112884043	112942482	13	0.6435	SMALL-GAIN	FOCAL	1	PTPN11
TCGA.AG.3909.01A	12	113733717	114823225	64	0.4662	SMALL-GAIN	FOCAL	8	"LHX5,PLBD2,RBM19,SDS,SDSL,SLC8B1,TBX5,TPCN1"
TCGA.AA.A00N.01A	12	113744251	114803865	65	0.6413	SMALL-GAIN	FOCAL	7	"LHX5,PLBD2,RBM19,SDS,SDSL,SLC8B1,TBX5"
TCGA.AG.A00C.01A	12	114832519	115120600	13	0.543	SMALL-GAIN	FOCAL	2	"TBX3,TBX5"
TCGA.AA.3941	12	114967807	115299860	124	0.6465	SMALL-GAIN	FOCAL	1	TBX3
TCGA.AG.3891.01A	12	115111928	115120600	7	0.5053	SMALL-GAIN	FOCAL	1	TBX3
TCGA.AA.A00N.01A	12	115120600	116420141	11	0.498	SMALL-GAIN	FOCAL	2	"MED13L,TBX3"
TCGA.CK.5914.01A	12	115120600	116534424	30	0.5975	SMALL-GAIN	FOCAL	2	"MED13L,TBX3"
TCGA.AA.3850	12	116252944	116281323	26	0.63585	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	12	116399020	116586311	31	0.4204	SMALL-GAIN	FOCAL	1	MED13L
TCGA.AA.A00N.01A	12	116450555	116675250	9	0.6742	SMALL-GAIN	FOCAL	1	MED13L
TCGA.AA.3844	12	116645419	117940995	463	0.6126	SMALL-GAIN	FOCAL	10	"C12orf49,FBXO21,FBXW8,HRK,KSR2,MAP1LC3B2,MED13L,NOS1,RNFT2,TESC"
TCGA.AA.A010.01A	12	117287087	117595647	22	0.3906	SMALL-GAIN	FOCAL	5	"FBXO21,FBXW8,HRK,RNFT2,TESC"
TCGA.AA.A01Q.01A	12	117628014	118454564	14	0.5491	SMALL-GAIN	FOCAL	4	"FBXO21,KSR2,NOS1,RFC5"
TCGA.AA.A010.01A	12	117655800	118462609	54	0.6758	SMALL-GAIN	FOCAL	3	"KSR2,NOS1,RFC5"
TCGA.AA.3844	12	117951149	119320733	513	0.4455	SMALL-GAIN	FOCAL	7	"KSR2,PEBP1,RFC5,SUDS3,TAOK3,VSIG10,WSB2"
TCGA.AG.A01W.01A	12	118453024	118602398	13	0.4878	SMALL-GAIN	FOCAL	5	"PEBP1,RFC5,TAOK3,VSIG10,WSB2"
TCGA.AG.3906.01A	12	118471952	118519882	14	0.6665	SMALL-GAIN	FOCAL	2	"VSIG10,WSB2"
TCGA.AA.A010.01A	12	118533301	118651778	17	0.6026	SMALL-GAIN	FOCAL	3	"PEBP1,TAOK3,VSIG10"
TCGA.AG.A01W.01A	12	118697899	118707116	6	0.5114	SMALL-GAIN	FOCAL	1	TAOK3
TCGA.AG.A00C.01A	12	118817902	118828884	5	0.532	SMALL-GAIN	FOCAL	1	SUDS3
TCGA.AG.3909.01A	12	118838422	119583149	13	0.4369	SMALL-GAIN	FOCAL	2	"SRRM4,SUDS3"
TCGA.A6.3808.01A	12	118838422	120568403	106	0.4735	SMALL-GAIN	FOCAL	10	"CCDC60,CCDC64,CIT,GCN1L1,HSPB8,PRKAB1,RAB35,SRRM4,SUDS3,TMEM233"
TCGA.AA.A00N.01A	12	118841170	120067491	35	0.6672	SMALL-GAIN	FOCAL	5	"CCDC60,HSPB8,SRRM4,SUDS3,TMEM233"
TCGA.AA.A010.01A	12	119419650	120313846	85	0.6191	SMALL-GAIN	FOCAL	6	"CCDC60,CIT,HSPB8,PRKAB1,SRRM4,TMEM233"
TCGA.AG.A01W.01A	12	119649166	119660429	5	0.5454	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	12	119772935	120106013	16	0.595	SMALL-GAIN	FOCAL	3	"CCDC60,PRKAB1,TMEM233"
TCGA.AG.3909.01A	12	120166275	120510306	32	0.4165	SMALL-GAIN	FOCAL	2	"CCDC64,CIT"
TCGA.AG.A00C.01A	12	120535011	120546175	4	0.4206	SMALL-GAIN	FOCAL	1	RAB35
TCGA.AG.3909.01A	12	120541578	120569682	7	0.4058	SMALL-GAIN	FOCAL	2	"GCN1L1,RAB35"
TCGA.AG.3909.01A	12	120605988	120622588	12	0.3986	SMALL-GAIN	FOCAL	1	GCN1L1
TCGA.AA.A010.01A	12	120806558	120883990	5	0.5037	SMALL-GAIN	FOCAL	3	"COX6A1,MSI1,TRIAP1"
TCGA.CK.5914.01A	12	120966706	121008963	13	0.3813	SMALL-GAIN	FOCAL	2	"COQ5,RNF10"
TCGA.CK.5914.01A	12	121202737	121229216	9	0.6375	SMALL-GAIN	FOCAL	1	SPPL3
TCGA.AG.3909.01A	12	121202737	121248563	10	0.5103	SMALL-GAIN	FOCAL	1	SPPL3
TCGA.CK.5914.01A	12	121469198	121647921	16	0.5473	SMALL-GAIN	FOCAL	3	"OASL,P2RX4,P2RX7"
TCGA.AA.A00N.01A	12	121603834	121647921	7	0.5758	SMALL-GAIN	FOCAL	2	"P2RX4,P2RX7"
TCGA.AA.A010.01A	12	121613139	121647921	5	0.44	SMALL-GAIN	FOCAL	2	"P2RX4,P2RX7"
TCGA.AA.A010.01A	12	121670206	121691025	11	0.3811	SMALL-GAIN	FOCAL	2	"CAMKK2,P2RX4"
TCGA.AG.A01W.01A	12	122032255	122047787	13	0.5811	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	12	122284717	122399845	28	0.5263	SMALL-GAIN	FOCAL	3	"HPD,PSMD9,WDR66"
TCGA.AG.3909.01A	12	122369610	122405883	14	0.4465	SMALL-GAIN	FOCAL	1	WDR66
TCGA.AG.A01W.01A	12	122434608	122457962	7	0.427	SMALL-GAIN	FOCAL	1	WDR66
TCGA.AA.A010.01A	12	122611765	122658354	16	0.5252	SMALL-GAIN	FOCAL	3	"IL31,LRRC43,MLXIP"
TCGA.AA.A010.01A	12	122734381	122812472	16	0.6553	SMALL-GAIN	FOCAL	2	"CLIP1,VPS33A"
TCGA.AG.A01W.01A	12	122804872	122812946	4	0.5538	SMALL-GAIN	FOCAL	1	CLIP1
TCGA.AA.3509.01A	12	122966060	122967760	4	0.6774	SMALL-GAIN	FOCAL	1	ZCCHC8
TCGA.AA.A010.01A	12	123060058	123238228	38	0.5251	SMALL-GAIN	FOCAL	5	"DENR,HCAR1,HCAR2,HCAR3,KNTC1"
TCGA.AG.4009.01A	12	123380451	123434961	10	0.4598	SMALL-GAIN	FOCAL	2	"ABCB9,VPS37B"
TCGA.CK.5914.01A	12	123488902	123518997	6	0.6431	SMALL-GAIN	FOCAL	1	PITPNM2
TCGA.AG.3909.01A	12	123749705	123834807	27	0.4619	SMALL-GAIN	FOCAL	2	"CDK2AP1,SBNO1"
TCGA.CK.5914.01A	12	123782474	123820893	20	0.5322	SMALL-GAIN	FOCAL	1	SBNO1
TCGA.AA.A010.01A	12	123907539	124163688	52	0.546	SMALL-GAIN	FOCAL	8	"DDX55,EIF2B1,GTF2H3,RILPL1,RILPL2,SNRNP35,TCTN2,TMED2"
TCGA.CK.5914.01A	12	123950037	124069137	10	0.596	SMALL-GAIN	FOCAL	3	"RILPL1,SNRNP35,TMED2"
TCGA.AA.A010.01A	12	124272302	124319911	16	0.6359	SMALL-GAIN	FOCAL	1	DNAH10
TCGA.AG.3909.01A	12	124288216	124393760	38	0.5431	SMALL-GAIN	FOCAL	1	DNAH10
TCGA.AA.A00N.01A	12	124289339	124387438	37	0.5792	SMALL-GAIN	FOCAL	1	DNAH10
TCGA.AA.A010.01A	12	124349125	124402080	25	0.3996	SMALL-GAIN	FOCAL	1	DNAH10
TCGA.AA.A010.01A	12	125509489	129189984	36	0.5522	SMALL-GAIN	FOCAL	4	"AACS,BRI3BP,TMEM132B,TMEM132C"
TCGA.CK.5914.01A	12	125618482	129100645	16	0.5743	SMALL-GAIN	FOCAL	3	"AACS,TMEM132B,TMEM132C"
TCGA.AG.3909.01A	12	125618482	129293293	20	0.5418	SMALL-GAIN	FOCAL	4	"AACS,SLC15A4,TMEM132B,TMEM132C"
TCGA.AA.A010.01A	12	129373132	130184313	15	0.5433	SMALL-GAIN	FOCAL	2	"GLT1D1,TMEM132D"
TCGA.AA.3660	12	129804153	129943345	94	0.6102	SMALL-GAIN	FOCAL	1	TMEM132D
TCGA.AG.A01W.01A	12	129863397	130761711	37	0.4373	SMALL-GAIN	FOCAL	2	"FZD10,TMEM132D"
TCGA.AG.A01W.01A	12	131112572	131712760	51	0.5221	SMALL-GAIN	FOCAL	3	"ADGRD1,RAN,STX2"
TCGA.AG.3906.01A	12	131357324	131360119	3	0.5205	SMALL-GAIN	FOCAL	1	RAN
TCGA.AA.A010.01A	12	131569048	132281741	27	0.4065	SMALL-GAIN	FOCAL	2	"ADGRD1,SFSWAP"
TCGA.RU.A8FL	12	132544642	132560956	3	0.6065	SMALL-GAIN	FOCAL	1	EP400
TCGA.AG.A01L.01A	12	132547134	133202184	22	0.5139	SMALL-GAIN	FOCAL	8	"DDX51,EP400,FBRSL1,GALNT9,LRCOL1,NOC4L,P2RX2,POLE"
TCGA.AA.A01Q.01A	12	132561904	133147871	13	0.4119	SMALL-GAIN	FOCAL	5	"DDX51,EP400,FBRSL1,GALNT9,NOC4L"
TCGA.AA.3939.01A	12	133310934	133778682	60	0.52	SMALL-GAIN	FOCAL	10	"ANKLE2,CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3660	12	133380975	133777644	48	0.379	SMALL-GAIN	FOCAL	9	"CHFR,GOLGA3,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A01Q.01A	12	133682048	133778682	7	0.5686	SMALL-GAIN	FOCAL	4	"ZNF10,ZNF140,ZNF268,ZNF891"
TCGA.D5.6538	13	19212261	19538885	45	0.5907	SMALL-GAIN	FOCAL	0	None
TCGA.D5.6926	13	19212261	19564714	56	0.4376	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3728	13	19212261	19701502	122	0.5469	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3662	13	19212261	19722800	131	0.6419	SMALL-GAIN	FOCAL	0	None
TCGA.A6.5656	13	19212261	20259992	279	0.5235	SMALL-GAIN	FOCAL	3	"MPHOSPH8,TPTE2,TUBA3C"
TCGA.AY.A8YK	13	19212261	20359698	291	0.5968	SMALL-GAIN	FOCAL	4	"MPHOSPH8,PSPC1,TPTE2,TUBA3C"
TCGA.AZ.4681	13	19212261	20601555	318	0.5416	SMALL-GAIN	FOCAL	6	"MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.DC.6154	13	19212261	20901723	413	0.3869	SMALL-GAIN	FOCAL	9	"GJA3,GJB2,GJB6,MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AA.3844	13	19301165	19592386	57	0.47	SMALL-GAIN	FOCAL	0	None
TCGA.G4.6299	13	19583662	19599043	12	0.6107	SMALL-GAIN	FOCAL	0	None
TCGA.CM.5349	13	19583662	19611007	16	0.6705	SMALL-GAIN	FOCAL	0	None
TCGA.AF.6655	13	19583662	19618303	21	0.5517	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	13	19600070	20207858	29	0.3847	SMALL-GAIN	FOCAL	3	"MPHOSPH8,TPTE2,TUBA3C"
TCGA.AG.A026	13	19602538	19623712	12	0.3891	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	13	19612261	19894040	111	0.5287	SMALL-GAIN	FOCAL	1	TUBA3C
TCGA.RU.A8FL	13	19925983	20555811	105	0.4544	SMALL-GAIN	FOCAL	5	"MPHOSPH8,PSPC1,TPTE2,ZMYM2,ZMYM5"
TCGA.CK.5914.01A	13	20066920	20245914	16	0.4555	SMALL-GAIN	FOCAL	2	"MPHOSPH8,TPTE2"
TCGA.AG.3909.01A	13	20235790	20641387	41	0.6413	SMALL-GAIN	FOCAL	4	"MPHOSPH8,PSPC1,ZMYM2,ZMYM5"
TCGA.AG.A01W.01A	13	20255813	20299159	17	0.587	SMALL-GAIN	FOCAL	1	PSPC1
TCGA.AA.3712	13	20357219	20654609	39	0.6536	SMALL-GAIN	FOCAL	2	"ZMYM2,ZMYM5"
TCGA.AA.A00N.01A	13	20567191	20625525	11	0.656	SMALL-GAIN	FOCAL	1	ZMYM2
TCGA.DC.6154	13	20950070	21127568	91	0.4232	SMALL-GAIN	FOCAL	1	CRYL1
TCGA.AA.A00N.01A	13	21199850	21245075	10	0.4662	SMALL-GAIN	FOCAL	1	IFT88
TCGA.AA.A00N.01A	13	21370178	21374933	5	0.4371	SMALL-GAIN	FOCAL	1	XPO4
TCGA.AG.A02X.01A	13	21381549	21383882	4	0.6726	SMALL-GAIN	FOCAL	1	XPO4
TCGA.CK.5914.01A	13	21557325	21732059	12	0.5035	SMALL-GAIN	FOCAL	3	"LATS2,SAP18,SKA3"
TCGA.AG.3891.01A	13	21557325	21976892	24	0.5321	SMALL-GAIN	FOCAL	5	"LATS2,MRPL57,SAP18,SKA3,ZDHHC20"
TCGA.AG.3611.01A	13	21746441	22113725	12	0.6441	SMALL-GAIN	FOCAL	4	"MICU2,MRPL57,SKA3,ZDHHC20"
TCGA.AA.3872	13	22321689	23241968	470	0.5644	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	13	22321689	24481925	1025	0.4288	SMALL-GAIN	FOCAL	6	"C1QTNF9B,C1QTNF9B-AS1,MIPEP,SACS,SGCG,TNFRSF19"
TCGA.CK.5912	13	23057867	23341614	128	0.5785	SMALL-GAIN	FOCAL	0	None
TCGA.EI.6508	13	23755126	23902580	76	0.4509	SMALL-GAIN	FOCAL	1	SGCG
TCGA.CK.5912	13	23872791	24758797	469	0.6636	SMALL-GAIN	FOCAL	7	"C1QTNF9B,C1QTNF9B-AS1,MIPEP,SACS,SGCG,SPATA13,TNFRSF19"
TCGA.AA.3712	13	24724715	25355363	287	0.4471	SMALL-GAIN	FOCAL	5	"ATP12A,C1QTNF9,PARP4,RNF17,SPATA13"
TCGA.AA.3930.01A	13	25021142	25049570	11	0.5175	SMALL-GAIN	FOCAL	1	PARP4
TCGA.AG.3909.01A	13	25338290	25448205	32	0.5926	SMALL-GAIN	FOCAL	1	RNF17
TCGA.AA.A00N.01A	13	25362086	25444659	26	0.4682	SMALL-GAIN	FOCAL	1	RNF17
TCGA.AG.A01W.01A	13	25518610	26154705	28	0.481	SMALL-GAIN	FOCAL	5	"AMER2,ATP8A2,MTMR6,NUPL1,PABPC3"
TCGA.AA.A00F.01A	13	25743745	26620639	36	0.6511	SMALL-GAIN	FOCAL	5	"AMER2,ATP8A2,MTMR6,NUPL1,SHISA2"
TCGA.CK.5914.01A	13	25831835	25889458	14	0.6057	SMALL-GAIN	FOCAL	2	"MTMR6,NUPL1"
TCGA.AG.3909.01A	13	25887735	26117386	23	0.4576	SMALL-GAIN	FOCAL	2	"ATP8A2,NUPL1"
TCGA.AA.A00F.01A	13	26828751	27745686	32	0.6232	SMALL-GAIN	FOCAL	4	"CDK8,GPR12,USP12,WASF3"
TCGA.AA.3819	13	27485632	27608866	103	0.4956	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3519	13	27513305	27607641	74	0.6274	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	13	27643398	27745686	8	0.3826	SMALL-GAIN	FOCAL	1	USP12
TCGA.AG.A01W.01A	13	27669302	27753439	12	0.5425	SMALL-GAIN	FOCAL	1	USP12
TCGA.AA.3982	13	27740940	28116558	154	0.4904	SMALL-GAIN	FOCAL	5	"GTF3A,MTIF3,RASL11A,RPL21,USP12"
TCGA.AA.3844	13	27740940	28206468	177	0.5759	SMALL-GAIN	FOCAL	7	"GTF3A,LNX2,MTIF3,POLR1D,RASL11A,RPL21,USP12"
TCGA.AA.3844	13	28232705	28485953	125	0.5572	SMALL-GAIN	FOCAL	2	"GSX1,POLR1D"
TCGA.AA.3982	13	28476617	28653241	72	0.6284	SMALL-GAIN	FOCAL	4	"CDX2,FLT3,PDX1,URAD"
TCGA.EI.7004	13	28545267	30186743	708	0.6516	SMALL-GAIN	FOCAL	8	"FLT1,FLT3,MTUS2,PAN3,POMP,SLC46A3,SLC7A1,URAD"
TCGA.AG.3891.01A	13	28589242	28748369	19	0.5746	SMALL-GAIN	FOCAL	2	"FLT3,PAN3"
TCGA.AG.3611.01A	13	28622374	28631447	5	0.5959	SMALL-GAIN	FOCAL	1	FLT3
TCGA.AG.3594	13	28631402	31003645	1018	0.4039	SMALL-GAIN	FOCAL	9	"FLT1,FLT3,KATNAL1,MTUS2,PAN3,POMP,SLC46A3,SLC7A1,UBL3"
TCGA.AG.3909.01A	13	28893512	28913273	8	0.5286	SMALL-GAIN	FOCAL	1	FLT1
TCGA.CK.5914.01A	13	29236515	30106913	39	0.5291	SMALL-GAIN	FOCAL	4	"MTUS2,POMP,SLC46A3,SLC7A1"
TCGA.AG.3909.01A	13	29598768	31719688	81	0.4014	SMALL-GAIN	FOCAL	10	"ALOX5AP,HMGB1,HSPH1,KATNAL1,MEDAG,MTUS2,SLC7A1,TEX26,UBL3,USPL1"
TCGA.AA.3982	13	30458736	30756295	171	0.4474	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	13	30811780	31127974	103	0.4388	SMALL-GAIN	FOCAL	2	"HMGB1,KATNAL1"
TCGA.AA.3518	13	31031883	31094020	21	0.6259	SMALL-GAIN	FOCAL	1	HMGB1
TCGA.AG.3891.01A	13	31035726	31548917	32	0.4543	SMALL-GAIN	FOCAL	5	"ALOX5AP,HMGB1,MEDAG,TEX26,USPL1"
TCGA.AG.A00C.01A	13	31204955	31835033	49	0.4984	SMALL-GAIN	FOCAL	6	"ALOX5AP,B3GALTL,HSPH1,MEDAG,TEX26,USPL1"
TCGA.AA.3982	13	31233062	31710019	299	0.4416	SMALL-GAIN	FOCAL	5	"ALOX5AP,HSPH1,MEDAG,TEX26,USPL1"
TCGA.AA.3941	13	31683391	32312178	232	0.5608	SMALL-GAIN	FOCAL	2	"B3GALTL,HSPH1"
TCGA.CK.4948.01B	13	31711143	31726942	14	0.6516	SMALL-GAIN	FOCAL	1	HSPH1
TCGA.CK.5914.01A	13	31724064	31803288	11	0.4734	SMALL-GAIN	FOCAL	2	"B3GALTL,HSPH1"
TCGA.AZ.4684.01A	13	31729613	32910374	109	0.5387	SMALL-GAIN	FOCAL	6	"B3GALTL,BRCA2,FRY,HSPH1,RXFP2,ZAR1L"
TCGA.AA.A00N.01A	13	31821110	32869327	90	0.6228	SMALL-GAIN	FOCAL	3	"B3GALTL,FRY,RXFP2"
TCGA.AA.A010.01A	13	32365912	32723830	17	0.5469	SMALL-GAIN	FOCAL	2	"FRY,RXFP2"
TCGA.AA.A010.01A	13	32757076	32937269	62	0.637	SMALL-GAIN	FOCAL	3	"BRCA2,FRY,ZAR1L"
TCGA.AA.A00N.01A	13	32911984	32968812	15	0.4262	SMALL-GAIN	FOCAL	1	BRCA2
TCGA.AZ.4684.01A	13	32928949	33257978	38	0.434	SMALL-GAIN	FOCAL	4	"BRCA2,N4BP2L1,N4BP2L2,PDS5B"
TCGA.AG.3909.01A	13	33001990	33268304	23	0.651	SMALL-GAIN	FOCAL	3	"N4BP2L1,N4BP2L2,PDS5B"
TCGA.AA.3968	13	33238321	33728185	232	0.5808	SMALL-GAIN	FOCAL	3	"KL,PDS5B,STARD13"
TCGA.AZ.4681	13	33238321	34157582	407	0.4627	SMALL-GAIN	FOCAL	3	"KL,PDS5B,STARD13"
TCGA.AG.A01W.01A	13	33297879	34582950	20	0.5943	SMALL-GAIN	FOCAL	4	"KL,PDS5B,RFC3,STARD13"
TCGA.AA.A010.01A	13	33634787	35516906	29	0.5166	SMALL-GAIN	FOCAL	4	"KL,NBEA,RFC3,STARD13"
TCGA.AA.A017.01A	13	33692153	34397990	13	0.394	SMALL-GAIN	FOCAL	2	"RFC3,STARD13"
TCGA.AA.A02H.01A	13	33692153	34397990	13	0.5078	SMALL-GAIN	FOCAL	2	"RFC3,STARD13"
TCGA.AA.3941	13	33811251	34731620	390	0.5344	SMALL-GAIN	FOCAL	2	"RFC3,STARD13"
TCGA.AG.A01W.01A	13	34631127	34947190	22	0.6065	SMALL-GAIN	FOCAL	0	None
TCGA.AF.A56N	13	34656571	34742418	41	0.6079	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3967.01A	13	35516906	36348625	60	0.5333	SMALL-GAIN	FOCAL	3	"DCLK1,MAB21L1,NBEA"
TCGA.AG.A00C.01A	13	36026202	36050714	5	0.6175	SMALL-GAIN	FOCAL	2	"MAB21L1,NBEA"
TCGA.AA.3667	13	36078426	36141642	41	0.4616	SMALL-GAIN	FOCAL	1	NBEA
TCGA.AA.A00N.01A	13	36124577	36445329	34	0.6754	SMALL-GAIN	FOCAL	2	"DCLK1,NBEA"
TCGA.NH.A6GB	13	36139198	36681360	287	0.4655	SMALL-GAIN	FOCAL	2	"DCLK1,NBEA"
TCGA.AA.A010.01A	13	36223755	36244987	8	0.6774	SMALL-GAIN	FOCAL	1	NBEA
TCGA.AA.3941	13	36333518	36363907	17	0.5582	SMALL-GAIN	FOCAL	1	DCLK1
TCGA.AA.3941	13	36368394	36454192	50	0.6152	SMALL-GAIN	FOCAL	1	DCLK1
TCGA.AA.3941	13	36642258	36716900	39	0.5679	SMALL-GAIN	FOCAL	1	DCLK1
TCGA.AA.3941	13	36728228	37092067	103	0.5966	SMALL-GAIN	FOCAL	5	"CCDC169,CCDC169-SOHLH2,CCNA1,SOHLH2,SPG20"
TCGA.CK.5914.01A	13	36827865	37586302	57	0.6486	SMALL-GAIN	FOCAL	10	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,EXOSC8,RFXAP,SERTM1,SMAD9,SPG20,SUPT20H"
TCGA.DY.A1DC	13	37119136	38329446	485	0.6693	SMALL-GAIN	FOCAL	9	"ALG5,CSNK1A1L,EXOSC8,POSTN,RFXAP,SERTM1,SMAD9,SUPT20H,TRPC4"
TCGA.AA.3844	13	37237028	37678864	125	0.4419	SMALL-GAIN	FOCAL	7	"ALG5,CSNK1A1L,EXOSC8,RFXAP,SERTM1,SMAD9,SUPT20H"
TCGA.AA.3941	13	37592603	37743665	40	0.6043	SMALL-GAIN	FOCAL	2	"CSNK1A1L,SUPT20H"
TCGA.CK.5914.01A	13	37618168	38152948	17	0.6395	SMALL-GAIN	FOCAL	3	"CSNK1A1L,POSTN,SUPT20H"
TCGA.AG.4009.01A	13	37619375	38357100	37	0.4667	SMALL-GAIN	FOCAL	4	"CSNK1A1L,POSTN,SUPT20H,TRPC4"
TCGA.AA.3846	13	37864917	38358631	259	0.6768	SMALL-GAIN	FOCAL	2	"POSTN,TRPC4"
TCGA.RU.A8FL	13	38540369	38927409	144	0.5062	SMALL-GAIN	FOCAL	1	UFM1
TCGA.AG.A00C.01A	13	38928308	39338424	11	0.5385	SMALL-GAIN	FOCAL	2	"FREM2,UFM1"
TCGA.AA.A00D.01A	13	38928308	39430213	19	0.6219	SMALL-GAIN	FOCAL	2	"FREM2,UFM1"
TCGA.AA.3941	13	39199951	40842308	688	0.5514	SMALL-GAIN	FOCAL	6	"COG6,FREM2,LHFP,NHLRC3,PROSER1,STOML3"
TCGA.AZ.4684.01A	13	39261462	40261600	65	0.6056	SMALL-GAIN	FOCAL	6	"COG6,FREM2,LHFP,NHLRC3,PROSER1,STOML3"
TCGA.AG.4009.01A	13	39261462	41345069	82	0.4593	SMALL-GAIN	FOCAL	8	"COG6,FOXO1,FREM2,LHFP,MRPS31,NHLRC3,PROSER1,STOML3"
TCGA.CK.5914.01A	13	39446850	39598555	21	0.6767	SMALL-GAIN	FOCAL	3	"FREM2,PROSER1,STOML3"
TCGA.AG.A00C.01A	13	39586189	41507564	57	0.4319	SMALL-GAIN	FOCAL	8	"COG6,ELF1,FOXO1,LHFP,MRPS31,NHLRC3,PROSER1,SLC25A15"
TCGA.AA.A00F.01A	13	39918036	41303486	25	0.5821	SMALL-GAIN	FOCAL	4	"COG6,FOXO1,LHFP,MRPS31"
TCGA.AG.3909.01A	13	39918036	41384878	37	0.5678	SMALL-GAIN	FOCAL	5	"COG6,FOXO1,LHFP,MRPS31,SLC25A15"
TCGA.AG.4009.01A	13	41556057	42439810	78	0.444	SMALL-GAIN	FOCAL	8	"ELF1,KBTBD6,KBTBD7,MTRF1,NAA16,RGCC,VWA8,WBP4"
TCGA.AA.A010.01A	13	41635713	42149825	49	0.4342	SMALL-GAIN	FOCAL	7	"KBTBD6,KBTBD7,MTRF1,NAA16,RGCC,VWA8,WBP4"
TCGA.AA.A00N.01A	13	41704574	41885595	13	0.5729	SMALL-GAIN	FOCAL	4	"KBTBD6,KBTBD7,MTRF1,NAA16"
TCGA.AA.A00F.01A	13	41929255	42407474	25	0.5462	SMALL-GAIN	FOCAL	3	"NAA16,RGCC,VWA8"
TCGA.AA.A00N.01A	13	42161600	42439810	31	0.6616	SMALL-GAIN	FOCAL	1	VWA8
TCGA.AA.3941	13	42167248	43438657	487	0.5458	SMALL-GAIN	FOCAL	5	"AKAP11,DGKH,FAM216B,TNFSF11,VWA8"
TCGA.AG.4009.01A	13	42486146	44464233	90	0.4247	SMALL-GAIN	FOCAL	10	"AKAP11,CCDC122,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,LACC1,TNFSF11,VWA8"
TCGA.AA.A00F.01A	13	42622863	43935394	78	0.6254	SMALL-GAIN	FOCAL	7	"AKAP11,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,TNFSF11"
TCGA.AA.A00N.01A	13	42622863	44433789	83	0.4694	SMALL-GAIN	FOCAL	8	"AKAP11,CCDC122,DGKH,DNAJC15,ENOX1,EPSTI1,FAM216B,TNFSF11"
TCGA.AA.A010.01A	13	42729380	42761147	10	0.5652	SMALL-GAIN	FOCAL	1	DGKH
TCGA.AA.A010.01A	13	43358155	44948117	49	0.381	SMALL-GAIN	FOCAL	8	"CCDC122,DNAJC15,ENOX1,EPSTI1,FAM216B,LACC1,SERP2,SMIM2"
TCGA.AA.3941	13	43947535	44441833	223	0.4411	SMALL-GAIN	FOCAL	2	"CCDC122,ENOX1"
TCGA.AA.3941	13	44450221	44613143	52	0.4459	SMALL-GAIN	FOCAL	2	"CCDC122,LACC1"
TCGA.AA.3664	13	44977395	46225448	293	0.4565	SMALL-GAIN	FOCAL	9	"COG3,ERICH6B,GPALPP1,GTF2F2,KCTD4,NUFIP1,SLC25A30,TPT1,TSC22D1"
TCGA.AA.A00N.01A	13	45515299	45857560	27	0.5221	SMALL-GAIN	FOCAL	4	"GPALPP1,GTF2F2,KCTD4,NUFIP1"
TCGA.AG.3909.01A	13	45515299	45857560	26	0.6586	SMALL-GAIN	FOCAL	4	"GPALPP1,GTF2F2,KCTD4,NUFIP1"
TCGA.AG.4009.01A	13	45515299	45914792	31	0.6479	SMALL-GAIN	FOCAL	5	"GPALPP1,GTF2F2,KCTD4,NUFIP1,TPT1"
TCGA.AA.A00K.01A	13	45578399	46064985	41	0.4426	SMALL-GAIN	FOCAL	6	"COG3,GPALPP1,GTF2F2,KCTD4,SLC25A30,TPT1"
TCGA.AG.A008.01A	13	45912707	46090239	31	0.3919	SMALL-GAIN	FOCAL	3	"COG3,SLC25A30,TPT1"
TCGA.AA.A010.01A	13	46083780	46425593	27	0.4069	SMALL-GAIN	FOCAL	4	"COG3,ERICH6B,SIAH3,SPERT"
TCGA.AA.A00L.01A	13	46357479	46619476	18	0.3929	SMALL-GAIN	FOCAL	2	"SIAH3,ZC3H13"
TCGA.AF.2693	13	46612835	46731734	61	0.4098	SMALL-GAIN	FOCAL	3	"CPB2,LCP1,ZC3H13"
TCGA.AA.A010.01A	13	46616245	47255828	55	0.4702	SMALL-GAIN	FOCAL	6	"CPB2,KIAA0226L,LCP1,LRCH1,LRRC63,ZC3H13"
TCGA.AF.2693	13	46758064	46802176	19	0.405	SMALL-GAIN	FOCAL	1	LRRC63
TCGA.AA.A00N.01A	13	46824458	46930503	9	0.6405	SMALL-GAIN	FOCAL	2	"KIAA0226L,LRRC63"
TCGA.AF.2693	13	47093045	47350481	116	0.4091	SMALL-GAIN	FOCAL	2	"ESD,LRCH1"
TCGA.AG.3594	13	47196664	48362972	537	0.434	SMALL-GAIN	FOCAL	3	"ESD,HTR2A,LRCH1"
TCGA.AA.A010.01A	13	47466508	48547350	8	0.4181	SMALL-GAIN	FOCAL	2	"HTR2A,SUCLA2"
TCGA.AF.2693	13	47836037	47862886	13	0.4604	SMALL-GAIN	FOCAL	0	None
TCGA.AF.2693	13	47907369	48183489	106	0.4257	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	13	48275411	48463122	57	0.5402	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	13	48547350	48916715	22	0.6274	SMALL-GAIN	FOCAL	5	"ITM2B,MED4,NUDT15,RB1,SUCLA2"
TCGA.AA.A010.01A	13	48954168	49089732	27	0.507	SMALL-GAIN	FOCAL	3	"LPAR6,RB1,RCBTB2"
TCGA.AA.3941	13	49174127	49426423	91	0.5554	SMALL-GAIN	FOCAL	1	CYSLTR2
TCGA.AA.A00N.01A	13	49280917	49770962	22	0.3841	SMALL-GAIN	FOCAL	2	"CYSLTR2,FNDC3A"
TCGA.AA.3941	13	49442754	49674928	56	0.4953	SMALL-GAIN	FOCAL	1	FNDC3A
TCGA.AA.A00Q.01A	13	49710421	50306458	87	0.5356	SMALL-GAIN	FOCAL	10	"ARL11,CAB39L,CDADC1,EBPL,FNDC3A,KPNA3,MLNR,PHF11,RCBTB1,SETDB2"
TCGA.AA.A00N.01A	13	49822118	50038123	23	0.4839	SMALL-GAIN	FOCAL	3	"CAB39L,CDADC1,SETDB2"
TCGA.CK.5914.01A	13	50097276	50505107	42	0.4497	SMALL-GAIN	FOCAL	6	"ARL11,EBPL,KPNA3,PHF11,RCBTB1,SPRYD7"
TCGA.AA.A01C.01A	13	51503584	51929127	18	0.5217	SMALL-GAIN	FOCAL	3	"FAM124A,RNASEH2B,SERPINE3"
TCGA.AA.A00N.01A	13	51504771	52330421	55	0.6028	SMALL-GAIN	FOCAL	5	"FAM124A,INTS6,RNASEH2B,SERPINE3,WDFY2"
TCGA.AA.A010.01A	13	51825564	51953547	18	0.6593	SMALL-GAIN	FOCAL	3	"FAM124A,INTS6,SERPINE3"
TCGA.AA.A01C.01A	13	51948307	52348029	28	0.5926	SMALL-GAIN	FOCAL	3	"DHRS12,INTS6,WDFY2"
TCGA.AG.3909.01A	13	52004394	52343212	16	0.5218	SMALL-GAIN	FOCAL	3	"DHRS12,INTS6,WDFY2"
TCGA.AA.A00D.01A	13	52004394	52544586	29	0.5799	SMALL-GAIN	FOCAL	5	"ATP7B,CCDC70,DHRS12,INTS6,WDFY2"
TCGA.AA.A010.01A	13	52158776	52604764	48	0.4968	SMALL-GAIN	FOCAL	6	"ALG11,ATP7B,CCDC70,DHRS12,UTP14C,WDFY2"
TCGA.AA.A00N.01A	13	52439478	52585351	22	0.5402	SMALL-GAIN	FOCAL	2	"ATP7B,CCDC70"
TCGA.AG.3909.01A	13	52439478	52606399	29	0.4401	SMALL-GAIN	FOCAL	4	"ALG11,ATP7B,CCDC70,UTP14C"
TCGA.AG.3906.01A	13	52663320	52693406	9	0.5629	SMALL-GAIN	FOCAL	1	NEK5
TCGA.AG.4009.01A	13	52673839	52960111	22	0.3929	SMALL-GAIN	FOCAL	3	"NEK3,NEK5,THSD1"
TCGA.AG.3906.01A	13	52989910	53016465	11	0.6127	SMALL-GAIN	FOCAL	1	VPS36
TCGA.AG.4009.01A	13	53216602	53286854	16	0.5641	SMALL-GAIN	FOCAL	3	"HNRNPA1L2,LECT1,SUGT1"
TCGA.AG.3909.01A	13	53250339	53298081	7	0.6643	SMALL-GAIN	FOCAL	2	"LECT1,SUGT1"
TCGA.AA.3941	13	53483061	53924430	180	0.518	SMALL-GAIN	FOCAL	1	OLFM4
TCGA.AG.3891.01A	13	53608434	53624067	4	0.5152	SMALL-GAIN	FOCAL	1	OLFM4
TCGA.AA.3867	13	53892196	57926433	933	0.4204	SMALL-GAIN	FOCAL	5	"PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.QG.A5Z1	13	54079364	55056128	299	0.6104	SMALL-GAIN	FOCAL	0	None
TCGA.AF.2693	13	54085294	54736326	217	0.4474	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3524	13	55790730	66559530	2749	0.4483	SMALL-GAIN	FOCAL	9	"DIAPH3,PCDH17,PCDH20,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.F5.6571	13	56005007	56324142	70	0.583	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6864	13	56747317	57024913	51	0.6029	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	56788048	57353819	70	0.6356	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6571	13	57246426	57803184	84	0.6432	SMALL-GAIN	FOCAL	5	"PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.AF.2693	13	57386922	57906647	90	0.5451	SMALL-GAIN	FOCAL	5	"PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.AA.3867	13	57947254	58583349	107	0.5285	SMALL-GAIN	FOCAL	1	PCDH17
TCGA.F5.6571	13	58277305	62428646	1271	0.5406	SMALL-GAIN	FOCAL	4	"DIAPH3,PCDH17,PCDH20,TDRD3"
TCGA.AA.3867	13	58605260	63376973	1421	0.5812	SMALL-GAIN	FOCAL	3	"DIAPH3,PCDH20,TDRD3"
TCGA.AA.3697	13	59170845	62892131	1178	0.5749	SMALL-GAIN	FOCAL	3	"DIAPH3,PCDH20,TDRD3"
TCGA.AA.3941	13	59256838	60145339	352	0.4072	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3679	13	59499220	61077963	521	0.3951	SMALL-GAIN	FOCAL	2	"DIAPH3,TDRD3"
TCGA.AF.2693	13	59660888	60064224	204	0.5177	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	13	60156069	61452512	419	0.4966	SMALL-GAIN	FOCAL	2	"DIAPH3,TDRD3"
TCGA.AA.3561	13	60426887	69235365	2386	0.4374	SMALL-GAIN	FOCAL	4	"DIAPH3,PCDH20,PCDH9,TDRD3"
TCGA.AF.2693	13	60911521	61202182	69	0.4503	SMALL-GAIN	FOCAL	1	TDRD3
TCGA.AA.3679	13	61085849	68895712	2100	0.6776	SMALL-GAIN	FOCAL	3	"PCDH20,PCDH9,TDRD3"
TCGA.AA.3941	13	61465128	61604735	42	0.4083	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	63403882	66596487	819	0.6646	SMALL-GAIN	FOCAL	0	None
TCGA.AF.2693	13	63449508	63785756	53	0.3862	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6571	13	63785756	64221350	138	0.5114	SMALL-GAIN	FOCAL	0	None
TCGA.AF.2693	13	64430032	65467556	300	0.4276	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6571	13	64665433	67697373	844	0.5298	SMALL-GAIN	FOCAL	1	PCDH9
TCGA.AF.2693	13	65583171	65798302	30	0.5949	SMALL-GAIN	FOCAL	0	None
TCGA.AF.2693	13	65881898	66588834	202	0.664	SMALL-GAIN	FOCAL	0	None
TCGA.DC.6682	13	67148220	67527642	113	0.4318	SMALL-GAIN	FOCAL	1	PCDH9
TCGA.AF.2693	13	67850566	68514523	173	0.5861	SMALL-GAIN	FOCAL	0	None
TCGA.QG.A5Z1	13	67963728	73469332	1724	0.5901	SMALL-GAIN	FOCAL	6	"BORA,DACH1,DIS3,KLHL1,MZT1,PIBF1"
TCGA.DY.A1DC	13	68155889	69651636	389	0.6548	SMALL-GAIN	FOCAL	0	None
TCGA.SS.A7HO	13	68460036	69448113	235	0.4528	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6571	13	68595972	69951723	418	0.5643	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3561	13	69269118	72275404	945	0.4605	SMALL-GAIN	FOCAL	2	"DACH1,KLHL1"
TCGA.SS.A7HO	13	69462391	71277508	615	0.4944	SMALL-GAIN	FOCAL	1	KLHL1
TCGA.AF.2693	13	69882445	70167747	58	0.5935	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A28F	13	70655359	73843868	1120	0.5878	SMALL-GAIN	FOCAL	7	"BORA,DACH1,DIS3,KLF5,KLHL1,MZT1,PIBF1"
TCGA.F5.6571	13	70744524	71022780	122	0.6375	SMALL-GAIN	FOCAL	0	None
TCGA.CA.6715	13	71067887	71853722	242	0.5086	SMALL-GAIN	FOCAL	0	None
TCGA.AF.2693	13	71275639	72585541	388	0.573	SMALL-GAIN	FOCAL	1	DACH1
TCGA.AA.A01S	13	71290329	71940540	203	0.51375	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	13	72255890	73637892	51	0.5996	SMALL-GAIN	FOCAL	6	"BORA,DACH1,DIS3,KLF5,MZT1,PIBF1"
TCGA.AA.A00F.01A	13	73372035	73539411	11	0.4769	SMALL-GAIN	FOCAL	1	PIBF1
TCGA.AA.A00N.01A	13	73395945	76055379	42	0.46	SMALL-GAIN	FOCAL	4	"KLF12,KLF5,PIBF1,TBC1D4"
TCGA.AG.3909.01A	13	73395945	76055379	44	0.6159	SMALL-GAIN	FOCAL	4	"KLF12,KLF5,PIBF1,TBC1D4"
TCGA.AA.3844	13	73469332	73825015	110	0.5847	SMALL-GAIN	FOCAL	2	"KLF5,PIBF1"
TCGA.A6.6137	13	73598575	75203475	710	0.6648	SMALL-GAIN	FOCAL	2	"KLF12,KLF5"
TCGA.AA.3952	13	73609010	74078255	212	0.6679	SMALL-GAIN	FOCAL	1	KLF5
TCGA.AD.6895	13	73609010	75796435	901	0.392	SMALL-GAIN	FOCAL	2	"KLF12,KLF5"
TCGA.CA.5254	13	73609880	74076149	210	0.6599	SMALL-GAIN	FOCAL	1	KLF5
TCGA.AA.A00F.01A	13	73649795	77460054	56	0.4676	SMALL-GAIN	FOCAL	8	"COMMD6,KCTD12,KLF12,KLF5,LMO7,LMO7DN,TBC1D4,UCHL3"
TCGA.AA.A01S	13	74396750	75015569	306	0.48075	SMALL-GAIN	FOCAL	1	KLF12
TCGA.AF.2693	13	74477301	74601934	61	0.5222	SMALL-GAIN	FOCAL	1	KLF12
TCGA.A6.2675	13	74611940	74714342	45	0.433	SMALL-GAIN	FOCAL	1	KLF12
TCGA.AF.2693	13	74611940	74836736	107	0.5992	SMALL-GAIN	FOCAL	1	KLF12
TCGA.AF.2693	13	75123900	75471585	134	0.5426	SMALL-GAIN	FOCAL	0	None
TCGA.AF.2693	13	75585961	76654652	428	0.5025	SMALL-GAIN	FOCAL	5	"COMMD6,LMO7,LMO7DN,TBC1D4,UCHL3"
TCGA.CK.5914.01A	13	75930236	76140835	11	0.4799	SMALL-GAIN	FOCAL	3	"COMMD6,TBC1D4,UCHL3"
TCGA.AG.3909.01A	13	76140835	76383213	19	0.5299	SMALL-GAIN	FOCAL	2	"LMO7,UCHL3"
TCGA.DY.A0XA	13	76610839	78659072	687	0.5291	SMALL-GAIN	FOCAL	8	"CLN5,EDNRB,FBXL3,IRG1,KCTD12,MYCBP2,SCEL,SLAIN1"
TCGA.AF.2693	13	76734084	78504854	591	0.5293	SMALL-GAIN	FOCAL	8	"CLN5,EDNRB,FBXL3,IRG1,KCTD12,MYCBP2,SCEL,SLAIN1"
TCGA.AA.A00N.01A	13	77619466	78493495	127	0.5938	SMALL-GAIN	FOCAL	4	"EDNRB,MYCBP2,SCEL,SLAIN1"
TCGA.AA.A010.01A	13	77695461	77786041	33	0.4385	SMALL-GAIN	FOCAL	1	MYCBP2
TCGA.CK.5914.01A	13	77730142	77738550	4	0.578	SMALL-GAIN	FOCAL	1	MYCBP2
TCGA.AA.3930.01A	13	77834532	80910903	96	0.4346	SMALL-GAIN	FOCAL	9	"EDNRB,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2"
TCGA.CK.5914.01A	13	78493495	79218970	8	0.4318	SMALL-GAIN	FOCAL	3	"EDNRB,POU4F1,RNF219"
TCGA.DY.A0XA	13	81032276	81308124	94	0.497	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6864	13	81312170	82063791	189	0.5929	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3697	13	81607181	88531998	1837	0.6103	SMALL-GAIN	FOCAL	3	"SLITRK1,SLITRK5,SLITRK6"
TCGA.QG.A5Z1	13	82314814	83889045	401	0.61	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4308	13	82429199	83144784	173	0.4574	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A0XA	13	82796487	83486434	185	0.478	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	13	83074795	83774732	180	0.6064	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4308	13	83183606	85136158	537	0.4502	SMALL-GAIN	FOCAL	1	SLITRK1
TCGA.F5.6571	13	83448430	83597933	43	0.4884	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6571	13	83786516	85489070	479	0.5448	SMALL-GAIN	FOCAL	1	SLITRK1
TCGA.DM.A1HB	13	84258895	84294432	13	0.583	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6864	13	84350203	85065826	181	0.5745	SMALL-GAIN	FOCAL	1	SLITRK1
TCGA.CA.5254	13	85303349	93723687	2432	0.484	SMALL-GAIN	FOCAL	3	"GPC5,SLITRK5,SLITRK6"
TCGA.AA.3679	13	86319379	86321511	7	0.3804	SMALL-GAIN	FOCAL	0	None
TCGA.CA.6715	13	86665092	86686532	12	0.5167	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6571	13	86666133	88546669	368	0.5889	SMALL-GAIN	FOCAL	1	SLITRK5
TCGA.CA.6715	13	86703924	86979477	33	0.4002	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3697	13	89241517	93916352	1506	0.5945	SMALL-GAIN	FOCAL	2	"GPC5,GPC6"
TCGA.F5.6571	13	90081021	90425964	110	0.5578	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4682	13	93241021	94619909	537	0.4172	SMALL-GAIN	FOCAL	2	"GPC5,GPC6"
TCGA.A6.6142	13	93354091	93674301	100	0.3828	SMALL-GAIN	FOCAL	1	GPC5
TCGA.F5.6571	13	94075871	94226585	76	0.5412	SMALL-GAIN	FOCAL	1	GPC6
TCGA.AA.3941	13	94974629	95102403	57	0.5308	SMALL-GAIN	FOCAL	2	"DCT,GPC6"
TCGA.DM.A1D7	13	95551283	96433581	381	0.6347	SMALL-GAIN	FOCAL	4	"ABCC4,CLDN10,DNAJC3,DZIP1"
TCGA.AA.A00N.01A	13	95673781	96086037	32	0.4618	SMALL-GAIN	FOCAL	2	"ABCC4,CLDN10"
TCGA.AA.3850	13	95719793	96171938	233	0.43295	SMALL-GAIN	FOCAL	2	"ABCC4,CLDN10"
TCGA.AA.A00N.01A	13	96234427	96242486	7	0.3903	SMALL-GAIN	FOCAL	1	DZIP1
TCGA.AA.3941	13	96435950	97286611	183	0.5752	SMALL-GAIN	FOCAL	3	"DNAJC3,HS6ST3,UGGT2"
TCGA.AA.A00N.01A	13	96622314	97484756	14	0.5951	SMALL-GAIN	FOCAL	2	"HS6ST3,UGGT2"
TCGA.CK.5914.01A	13	96675262	98658345	30	0.462	SMALL-GAIN	FOCAL	6	"HS6ST3,IPO5,MBNL2,OXGR1,RAP2A,UGGT2"
TCGA.AA.3972	13	97328170	97376922	10	0.4806	SMALL-GAIN	FOCAL	1	HS6ST3
TCGA.AA.3941	13	97461066	97661759	64	0.4974	SMALL-GAIN	FOCAL	2	"HS6ST3,OXGR1"
TCGA.AA.A010.01A	13	98828337	99340453	44	0.4994	SMALL-GAIN	FOCAL	4	"FARP1,RNF113B,SLC15A1,STK24"
TCGA.AA.3967.01A	13	99460816	99629986	45	0.6512	SMALL-GAIN	FOCAL	1	DOCK9
TCGA.AA.A00F.01A	13	99481579	99567592	5	0.4575	SMALL-GAIN	FOCAL	1	DOCK9
TCGA.AG.4009.01A	13	99907082	100515208	29	0.6022	SMALL-GAIN	FOCAL	5	"CLYBL,GPR18,GPR183,TM9SF2,UBAC2"
TCGA.AG.3909.01A	13	99907082	100537189	33	0.6369	SMALL-GAIN	FOCAL	5	"CLYBL,GPR18,GPR183,TM9SF2,UBAC2"
TCGA.AA.A010.01A	13	99947262	100515208	28	0.5675	SMALL-GAIN	FOCAL	4	"CLYBL,GPR183,TM9SF2,UBAC2"
TCGA.AG.3909.01A	13	100637150	101077850	20	0.5193	SMALL-GAIN	FOCAL	2	"PCCA,ZIC2"
TCGA.AG.4009.01A	13	100755079	101182296	22	0.3922	SMALL-GAIN	FOCAL	1	PCCA
TCGA.AA.A00N.01A	13	100953674	101143817	11	0.6009	SMALL-GAIN	FOCAL	1	PCCA
TCGA.AG.4009.01A	13	101707615	103383950	91	0.4085	SMALL-GAIN	FOCAL	6	"CCDC168,FGF14,ITGBL1,METTL21C,NALCN,TPP2"
TCGA.AA.A00D.01A	13	101720221	103418703	94	0.4109	SMALL-GAIN	FOCAL	7	"CCDC168,FGF14,ITGBL1,METTL21C,NALCN,TEX30,TPP2"
TCGA.AA.3941	13	101721701	102082067	174	0.5014	SMALL-GAIN	FOCAL	1	NALCN
TCGA.F5.6571	13	102050205	102185193	71	0.5042	SMALL-GAIN	FOCAL	2	"ITGBL1,NALCN"
TCGA.AA.3844	13	103080051	103761645	339	0.3936	SMALL-GAIN	FOCAL	9	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,KDELC1,METTL21C,SLC10A2,TEX30,TPP2"
TCGA.DY.A1DG	13	103143654	103152548	3	0.4583	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	13	103279311	103382553	30	0.4274	SMALL-GAIN	FOCAL	3	"CCDC168,METTL21C,TPP2"
TCGA.AG.4009.01A	13	103468731	107164883	37	0.4422	SMALL-GAIN	FOCAL	6	"BIVM,BIVM-ERCC5,DAOA,EFNB2,ERCC5,SLC10A2"
TCGA.AG.A00C.01A	13	103474361	107148061	33	0.5619	SMALL-GAIN	FOCAL	6	"BIVM,BIVM-ERCC5,DAOA,EFNB2,ERCC5,SLC10A2"
TCGA.AA.A010.01A	13	103490951	103527640	17	0.6569	SMALL-GAIN	FOCAL	3	"BIVM,BIVM-ERCC5,ERCC5"
TCGA.AA.3941	13	103857840	103976232	73	0.5798	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6571	13	104718038	105098767	156	0.5307	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4308	13	104893209	105451900	270	0.4239	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6571	13	105454867	105484734	25	0.492	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	13	106197874	106447407	103	0.5212	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	13	106460254	106471898	10	0.3974	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A0XD	13	107071798	107165254	55	0.4516	SMALL-GAIN	FOCAL	1	EFNB2
TCGA.AA.3941	13	107411228	108052336	283	0.5519	SMALL-GAIN	FOCAL	1	FAM155A
TCGA.F5.6571	13	108185606	108364723	112	0.5887	SMALL-GAIN	FOCAL	1	FAM155A
TCGA.AA.3941	13	108185616	108611612	202	0.436	SMALL-GAIN	FOCAL	1	FAM155A
TCGA.AA.3941	13	108628715	109472600	427	0.4975	SMALL-GAIN	FOCAL	4	"ABHD13,LIG4,MYO16,TNFSF13B"
TCGA.AZ.6605	13	108776797	110093487	628	0.4913	SMALL-GAIN	FOCAL	4	"ABHD13,LIG4,MYO16,TNFSF13B"
TCGA.AA.A00N.01A	13	108922245	111080762	89	0.5543	SMALL-GAIN	FOCAL	5	"COL4A1,COL4A2,IRS2,MYO16,TNFSF13B"
TCGA.AA.3850	13	109531515	109550245	15	0.57735	SMALL-GAIN	FOCAL	1	MYO16
TCGA.CM.6164	13	109592679	111849340	1083	0.5093	SMALL-GAIN	FOCAL	10	"ANKRD10,ARHGEF7,CARKD,CARS2,COL4A1,COL4A2,ING1,IRS2,MYO16,RAB20"
TCGA.CK.4948.01B	13	109831839	110408554	3	0.6619	SMALL-GAIN	FOCAL	2	"IRS2,MYO16"
TCGA.DM.A1D7	13	110781851	111192420	324	0.5899	SMALL-GAIN	FOCAL	3	"COL4A1,COL4A2,RAB20"
TCGA.AA.A010.01A	13	110822842	111164243	75	0.6019	SMALL-GAIN	FOCAL	2	"COL4A1,COL4A2"
TCGA.CK.5914.01A	13	111098106	111995081	92	0.4205	SMALL-GAIN	FOCAL	8	"ANKRD10,ARHGEF7,CARKD,CARS2,COL4A2,ING1,RAB20,TEX29"
TCGA.AA.A010.01A	13	111806199	112324663	29	0.5954	SMALL-GAIN	FOCAL	2	"ARHGEF7,TEX29"
TCGA.AG.4009.01A	13	111857597	113681131	90	0.5852	SMALL-GAIN	FOCAL	8	"ARHGEF7,ATP11A,ATP11AUN,MCF2L,SOX1,SPACA7,TEX29,TUBGCP3"
TCGA.A6.3810.01A	13	112722924	112725514	3	0.5044	SMALL-GAIN	FOCAL	1	SOX1
TCGA.F4.6459	13	112782519	113098511	139	0.6176	SMALL-GAIN	FOCAL	1	SPACA7
TCGA.F4.6459	13	113272877	113804190	156	0.6269	SMALL-GAIN	FOCAL	5	"ATP11A,ATP11AUN,F10,F7,MCF2L"
TCGA.AG.3909.01A	13	113801645	113917747	37	0.4217	SMALL-GAIN	FOCAL	4	"CUL4A,F10,PCID2,PROZ"
TCGA.AG.3891.01A	13	113815173	113965007	37	0.5453	SMALL-GAIN	FOCAL	4	"CUL4A,LAMP1,PCID2,PROZ"
TCGA.AG.A00C.01A	13	114193640	114748695	40	0.5312	SMALL-GAIN	FOCAL	8	"ATP4B,GAS6,GRK1,LINC00452,RASA3,TFDP1,TMCO3,TMEM255B"
TCGA.AA.A024.01A	13	114321650	114817489	34	0.5413	SMALL-GAIN	FOCAL	5	"GAS6,GRK1,LINC00452,RASA3,TMEM255B"
TCGA.EF.5830	13	114821175	115106995	65	0.5141	SMALL-GAIN	FOCAL	4	"CDC16,CHAMP1,RASA3,UPF3A"
TCGA.AA.3986	13	114889966	115106995	56	0.4249	SMALL-GAIN	FOCAL	4	"CDC16,CHAMP1,RASA3,UPF3A"
TCGA.AZ.4684.01A	13	115067169	115089311	3	0.5284	SMALL-GAIN	FOCAL	2	"CHAMP1,UPF3A"
TCGA.AA.A00Q.01A	14	19377557	19574139	2	0.5418	SMALL-GAIN	FOCAL	2	"OR11H12,POTEG"
TCGA.AA.A00J.01A	14	19377557	20215595	2	0.5578	SMALL-GAIN	FOCAL	5	"OR11H12,OR11H2,OR4Q3,POTEG,POTEM"
TCGA.CI.6622	14	20224002	20389720	12	0.4679	SMALL-GAIN	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AM.5821	14	20224002	20420150	15	0.4026	SMALL-GAIN	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AA.A01Q.01A	14	20841628	20853097	19	0.541	SMALL-GAIN	FOCAL	1	TEP1
TCGA.AG.A01W.01A	14	20921796	20940289	17	0.4697	SMALL-GAIN	FOCAL	4	"APEX1,OSGEP,PNP,TMEM55B"
TCGA.AA.A010.01A	14	21238303	21463272	14	0.5787	SMALL-GAIN	FOCAL	6	"EDDM3B,METTL17,RNASE1,RNASE2,RNASE3,RNASE6"
TCGA.AA.A00N.01A	14	21623084	21702064	7	0.4741	SMALL-GAIN	FOCAL	2	"HNRNPC,OR5AU1"
TCGA.AG.3909.01A	14	21792840	21897086	62	0.4732	SMALL-GAIN	FOCAL	3	"CHD8,RPGRIP1,SUPT16H"
TCGA.AG.A01L.01A	14	21859088	21871591	18	0.4585	SMALL-GAIN	FOCAL	1	CHD8
TCGA.AA.A00N.01A	14	21862439	21899876	25	0.5277	SMALL-GAIN	FOCAL	1	CHD8
TCGA.AA.3837	14	22267490	22611311	190	0.3808	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3855	14	22267490	22993719	393	0.4223	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3947	14	22276746	22978774	383	0.4175	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3599	14	22343145	23002683	356	0.4281	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3848	14	22376026	22607501	131	0.4453	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3584	14	22377904	22978774	329	0.4525	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3952	14	22390102	22947281	288	0.5195	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3856	14	22390226	22850760	240	0.53	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3695	14	22394782	22978515	301	0.5768	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3902	14	22404301	22978576	297	0.6159	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3580	14	22413784	22988021	299	0.5022	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3728	14	22418701	22983222	297	0.5425	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	14	22427925	22601779	80	0.6101	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3955	14	22428363	22658287	128	0.4252	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3878	14	22428363	23000061	297	0.5561	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3881	14	22433865	22975727	280	0.6484	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3854	14	22455613	22607501	80	0.453	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3812	14	22461776	22594445	66	0.4072	SMALL-GAIN	FOCAL	0	None
TCGA.AY.A8YK	14	22473193	22983222	262	0.5631	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3858	14	22478960	22838629	197	0.5106	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3544	14	22479596	22536070	25	0.4074	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3675	14	22479596	22580569	48	0.4251	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3860	14	22479596	22586391	53	0.4331	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3681	14	22479596	22607501	70	0.4361	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3673	14	22479596	22930786	234	0.4815	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3679	14	22479811	22619917	85	0.5141	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3516	14	22480323	22959825	246	0.6369	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3574	14	22537376	22611420	47	0.5554	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3977	14	22549609	22977221	236	0.5016	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3544	14	22553001	22607501	41	0.5771	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3872	14	22553001	22999541	248	0.4924	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	14	22562098	22601930	31	0.4058	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3549	14	22562098	22607501	38	0.529	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3680	14	22562098	22950490	217	0.552	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3867	14	22562098	22978759	238	0.4263	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3555	14	22568471	22978774	231	0.5451	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3692	14	22576147	22977221	220	0.6581	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3696	14	22580569	22970326	212	0.6368	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3979	14	22598375	22988021	214	0.5752	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3852	14	22605745	22617414	20	0.5956	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	14	22607501	22698623	62	0.6005	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3837	14	22613460	22983222	193	0.614	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3685	14	22615464	22838629	115	0.5024	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3864	14	22615464	22946219	164	0.5544	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3812	14	22615464	22946379	165	0.6319	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3883	14	22615464	22946379	165	0.4117	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3831	14	22615464	22975727	183	0.6019	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3549	14	22615464	22978774	189	0.5719	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3675	14	22615464	22988021	192	0.6717	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3574	14	22615464	23000061	198	0.5235	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3583	14	22617414	22959825	155	0.5872	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3885	14	22617432	22838629	112	0.6583	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3870	14	22617432	22977248	182	0.4885	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3842	14	22617432	22978774	186	0.4225	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3575	14	22617432	22983222	187	0.5597	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3833	14	22626947	22946379	159	0.6437	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3845	14	22626947	22947281	160	0.5414	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3950	14	22626947	22978774	184	0.5057	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3949	14	22628153	22947902	160	0.4841	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3684	14	22628153	22978774	183	0.596	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3821	14	22628153	22978774	183	0.515	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3877	14	22628153	22978774	183	0.4856	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3984	14	22628153	22978774	179	0.4997	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3869	14	22630151	22950490	158	0.5754	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3710	14	22630151	22999541	188	0.4523	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3875	14	22631884	22988021	183	0.4265	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3973	14	22652561	22950490	143	0.6124	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3955	14	22658312	22988570	162	0.6635	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3966	14	22714841	22718410	5	0.3797	SMALL-GAIN	FOCAL	0	None
TCGA.A6.6137	14	22718410	22731720	11	0.6394	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3679	14	22790919	22978774	85	0.5657	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3858	14	22855144	22970326	56	0.5771	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3885	14	22855144	22978774	67	0.5153	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	14	22861996	22897884	12	0.496	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3673	14	22938210	22946219	6	0.6077	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3860	14	22947281	22975727	18	0.4026	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3848	14	22966661	22988570	21	0.3999	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	14	22977221	22997832	12	0.618	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	14	23079709	23299044	19	0.4013	SMALL-GAIN	FOCAL	3	"ABHD4,OXA1L,SLC7A7"
TCGA.AA.A00N.01A	14	23235702	23299044	18	0.6345	SMALL-GAIN	FOCAL	2	"OXA1L,SLC7A7"
TCGA.AA.3979	14	23304271	23396679	20	0.6068	SMALL-GAIN	FOCAL	5	"LRP10,MMP14,PRMT5,RBM23,REM2"
TCGA.AG.3909.01A	14	23352455	23417095	28	0.3801	SMALL-GAIN	FOCAL	4	"HAUS4,PRMT5,RBM23,REM2"
TCGA.AA.A00N.01A	14	23389819	23417095	16	0.38	SMALL-GAIN	FOCAL	2	"HAUS4,PRMT5"
TCGA.AG.3611.01A	14	23415717	23424240	8	0.5005	SMALL-GAIN	FOCAL	1	HAUS4
TCGA.AG.3909.01A	14	23495251	23522654	9	0.3997	SMALL-GAIN	FOCAL	3	"CDH24,PSMB11,PSMB5"
TCGA.AG.3909.01A	14	23596349	23776935	14	0.4667	SMALL-GAIN	FOCAL	6	"BCL2L2,BCL2L2-PABPN1,HOMEZ,PPP1R3E,RNF212B,SLC7A8"
TCGA.AA.A01Q.01A	14	23634452	23777983	6	0.4992	SMALL-GAIN	FOCAL	6	"BCL2L2,BCL2L2-PABPN1,HOMEZ,PPP1R3E,RNF212B,SLC7A8"
TCGA.AA.3524	14	23854496	23888039	13	0.5926	SMALL-GAIN	FOCAL	2	"MYH6,MYH7"
TCGA.AA.A010.01A	14	23874235	23946382	41	0.6203	SMALL-GAIN	FOCAL	3	"MYH6,MYH7,NGDN"
TCGA.AA.3930.01A	14	23882918	23901614	28	0.6668	SMALL-GAIN	FOCAL	1	MYH7
TCGA.AA.A00N.01A	14	23900609	23947134	12	0.5056	SMALL-GAIN	FOCAL	2	"MYH7,NGDN"
TCGA.AG.3909.01A	14	23900609	23947134	12	0.6765	SMALL-GAIN	FOCAL	2	"MYH7,NGDN"
TCGA.AA.3941	14	23946763	24519138	181	0.4505	SMALL-GAIN	FOCAL	9	"AP1G2,DHRS2,DHRS4,DHRS4L1,DHRS4L2,JPH4,NGDN,THTPA,ZFHX2"
TCGA.AG.4009.01A	14	24437918	24475047	8	0.4446	SMALL-GAIN	FOCAL	2	"DHRS4,DHRS4L2"
TCGA.AG.3906.01A	14	24534127	24551626	17	0.4359	SMALL-GAIN	FOCAL	3	"CPNE6,LRRC16B,NRL"
TCGA.AG.3611.01A	14	24613140	24615690	5	0.4746	SMALL-GAIN	FOCAL	1	PSME2
TCGA.AG.3906.01A	14	24769672	24779786	14	0.5292	SMALL-GAIN	FOCAL	3	"CIDEB,LTB4R2,NOP9"
TCGA.AG.3906.01A	14	24791230	24799039	9	0.5667	SMALL-GAIN	FOCAL	1	ADCY4
TCGA.AG.3906.01A	14	24868413	24977331	27	0.4302	SMALL-GAIN	FOCAL	5	"CBLN3,CMA1,KHNYN,NYNRIN,SDR39U1"
TCGA.AA.A01Q.01A	14	24909279	25103254	22	0.6504	SMALL-GAIN	FOCAL	6	"CMA1,CTSG,GZMB,GZMH,KHNYN,SDR39U1"
TCGA.CK.5914.01A	14	24911329	26949136	31	0.6447	SMALL-GAIN	FOCAL	7	"CMA1,CTSG,GZMB,GZMH,NOVA1,SDR39U1,STXBP6"
TCGA.AG.3909.01A	14	24974684	25443820	24	0.6545	SMALL-GAIN	FOCAL	5	"CMA1,CTSG,GZMB,GZMH,STXBP6"
TCGA.AZ.4684.01A	14	25103254	31376046	83	0.4703	SMALL-GAIN	FOCAL	9	"COCH,FOXG1,G2E3,GZMB,NOVA1,PRKD1,SCFD1,STRN3,STXBP6"
TCGA.AA.A00N.01A	14	30046413	31344064	56	0.4545	SMALL-GAIN	FOCAL	4	"COCH,G2E3,PRKD1,SCFD1"
TCGA.AA.3941	14	31280964	32341905	215	0.6139	SMALL-GAIN	FOCAL	8	"AP4S1,COCH,DTD2,GPR33,HEATR5A,HECTD1,NUBPL,STRN3"
TCGA.AA.A00N.01A	14	31364617	34243512	129	0.4983	SMALL-GAIN	FOCAL	10	"AKAP6,AP4S1,ARHGAP5,DTD2,GPR33,HEATR5A,HECTD1,NPAS3,NUBPL,STRN3"
TCGA.AA.3941	14	32347352	32852902	201	0.405	SMALL-GAIN	FOCAL	2	"AKAP6,ARHGAP5"
TCGA.AA.3941	14	33225985	33562123	160	0.3961	SMALL-GAIN	FOCAL	2	"AKAP6,NPAS3"
TCGA.F5.6465	14	33450615	33452143	3	0.3966	SMALL-GAIN	FOCAL	1	NPAS3
TCGA.AA.3941	14	34248311	34892606	271	0.5182	SMALL-GAIN	FOCAL	2	"EGLN3,NPAS3"
TCGA.AG.3906.01A	14	34904355	35077194	17	0.6026	SMALL-GAIN	FOCAL	3	"EAPP,SNX6,SPTSSA"
TCGA.AA.3850	14	34921899	35603078	106	0.58065	SMALL-GAIN	FOCAL	9	"BAZ1A,CFL2,EAPP,FAM177A1,KIAA0391,PPP2R3C,SNX6,SPTSSA,SRP54"
TCGA.AA.3930.01A	14	34993876	35099040	17	0.5364	SMALL-GAIN	FOCAL	2	"EAPP,SNX6"
TCGA.AA.3941	14	35630318	36427022	148	0.589	SMALL-GAIN	FOCAL	6	"BRMS1L,INSM2,KIAA0391,NFKBIA,PSMA6,RALGAPA1"
TCGA.AA.3850	14	35636368	35958267	88	0.38845	SMALL-GAIN	FOCAL	3	"KIAA0391,NFKBIA,PSMA6"
TCGA.AA.A00N.01A	14	35649826	35786422	11	0.5866	SMALL-GAIN	FOCAL	2	"KIAA0391,PSMA6"
TCGA.AA.3509.01A	14	35871196	36229983	43	0.4354	SMALL-GAIN	FOCAL	3	"INSM2,NFKBIA,RALGAPA1"
TCGA.CK.5914.01A	14	36143339	36295684	24	0.381	SMALL-GAIN	FOCAL	2	"BRMS1L,RALGAPA1"
TCGA.AA.A02H.01A	14	36207722	36244140	10	0.384	SMALL-GAIN	FOCAL	1	RALGAPA1
TCGA.AA.3941	14	36499336	36574068	36	0.4598	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	14	36699640	36773476	27	0.5074	SMALL-GAIN	FOCAL	1	MBIP
TCGA.AA.A00N.01A	14	45403280	45523582	21	0.624	SMALL-GAIN	FOCAL	2	"FAM179B,KLHL28"
TCGA.AA.A010.01A	14	45590650	47770584	59	0.4279	SMALL-GAIN	FOCAL	5	"FANCM,FKBP3,MDGA2,MIS18BP1,RPL10L"
TCGA.AA.A00N.01A	14	45642226	45687433	16	0.6468	SMALL-GAIN	FOCAL	2	"FANCM,MIS18BP1"
TCGA.AA.3941	14	50797605	51525472	249	0.5269	SMALL-GAIN	FOCAL	8	"ABHD12B,ATL1,CDKL1,MAP4K5,NIN,PYGL,SAV1,TRIM9"
TCGA.AG.3909.01A	14	50886683	51273396	75	0.3951	SMALL-GAIN	FOCAL	4	"ATL1,MAP4K5,NIN,SAV1"
TCGA.AA.A00N.01A	14	50889780	51259381	74	0.5217	SMALL-GAIN	FOCAL	4	"ATL1,MAP4K5,NIN,SAV1"
TCGA.AA.A00N.01A	14	51443944	52456307	35	0.6673	SMALL-GAIN	FOCAL	5	"C14orf166,FRMD6,GNG2,TMX1,TRIM9"
TCGA.AA.3941	14	52432173	52555810	67	0.4693	SMALL-GAIN	FOCAL	3	"C14orf166,GNG2,NID2"
TCGA.AA.A00N.01A	14	52899000	52985841	15	0.6517	SMALL-GAIN	FOCAL	1	TXNDC16
TCGA.AA.3941	14	52989227	53495788	123	0.5233	SMALL-GAIN	FOCAL	7	"ERO1L,FERMT2,GNPNAT1,GPR137C,PSMC6,STYX,TXNDC16"
TCGA.AA.A00N.01A	14	53019819	53138288	16	0.4261	SMALL-GAIN	FOCAL	2	"ERO1L,GPR137C"
TCGA.AA.A00N.01A	14	53325047	53518505	15	0.4287	SMALL-GAIN	FOCAL	2	"DDHD1,FERMT2"
TCGA.AA.A00N.01A	14	53539268	53618932	7	0.4435	SMALL-GAIN	FOCAL	1	DDHD1
TCGA.AA.3941	14	53558172	53714845	32	0.6288	SMALL-GAIN	FOCAL	1	DDHD1
TCGA.AA.3941	14	53759504	53784254	10	0.5186	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	14	53798281	53830244	33	0.5502	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	14	55241600	55457884	26	0.545	SMALL-GAIN	FOCAL	3	"GCH1,SAMD4A,WDHD1"
TCGA.A6.6649	14	57141866	57229286	56	0.5104	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	14	57675279	57714317	16	0.4934	SMALL-GAIN	FOCAL	1	EXOC5
TCGA.AG.3909.01A	14	57876050	58563443	19	0.4426	SMALL-GAIN	FOCAL	4	"C14orf105,C14orf37,NAA30,SLC35F4"
TCGA.AA.A00N.01A	14	58811353	58862946	15	0.5771	SMALL-GAIN	FOCAL	2	"ARID4A,TOMM20L"
TCGA.AA.A00N.01A	14	58894932	59104872	31	0.5931	SMALL-GAIN	FOCAL	2	"DACT1,KIAA0586"
TCGA.AG.3909.01A	14	59730156	59835320	24	0.5758	SMALL-GAIN	FOCAL	1	DAAM1
TCGA.CK.5914.01A	14	59730156	59835320	24	0.4846	SMALL-GAIN	FOCAL	1	DAAM1
TCGA.AA.3509.01A	14	60758042	61519021	49	0.6397	SMALL-GAIN	FOCAL	8	"C14orf39,MNAT1,PPM1A,SIX1,SIX4,SIX6,SLC38A6,TRMT5"
TCGA.AZ.4684.01A	14	60944961	61519021	39	0.5528	SMALL-GAIN	FOCAL	7	"C14orf39,MNAT1,SIX1,SIX4,SIX6,SLC38A6,TRMT5"
TCGA.AA.A00N.01A	14	61482567	62014444	27	0.5455	SMALL-GAIN	FOCAL	3	"PRKCH,SLC38A6,TMEM30B"
TCGA.AG.3909.01A	14	61909807	62014444	11	0.5064	SMALL-GAIN	FOCAL	1	PRKCH
TCGA.A6.6649	14	62231213	62687046	150	0.4002	SMALL-GAIN	FOCAL	2	"SNAPC1,SYT16"
TCGA.AA.3941	14	62479950	62523147	16	0.5884	SMALL-GAIN	FOCAL	1	SYT16
TCGA.A6.6649	14	62796719	62933056	55	0.434	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	14	63174224	64484265	64	0.5939	SMALL-GAIN	FOCAL	7	"GPHB5,KCNH5,PPP2R5E,RHOJ,SGPP1,SYNE2,WDR89"
TCGA.CK.5914.01A	14	63246406	63863257	25	0.5132	SMALL-GAIN	FOCAL	4	"GPHB5,KCNH5,PPP2R5E,RHOJ"
TCGA.AA.3941	14	63498894	63866685	137	0.3992	SMALL-GAIN	FOCAL	4	"GPHB5,KCNH5,PPP2R5E,RHOJ"
TCGA.AA.A00D.01A	14	63851122	64194010	14	0.6718	SMALL-GAIN	FOCAL	3	"PPP2R5E,SGPP1,WDR89"
TCGA.AA.3862.01A	14	64447657	64655227	79	0.627	SMALL-GAIN	FOCAL	1	SYNE2
TCGA.AA.A00N.01A	14	64522625	64633943	42	0.623	SMALL-GAIN	FOCAL	1	SYNE2
TCGA.AG.3909.01A	14	64529432	64630071	38	0.412	SMALL-GAIN	FOCAL	1	SYNE2
TCGA.AG.3909.01A	14	64669482	64701638	20	0.4594	SMALL-GAIN	FOCAL	2	"ESR2,SYNE2"
TCGA.AA.A00N.01A	14	64675429	64921423	49	0.4042	SMALL-GAIN	FOCAL	4	"ESR2,MTHFD1,SYNE2,ZBTB25"
TCGA.AA.A010.01A	14	65239297	65381132	25	0.6248	SMALL-GAIN	FOCAL	3	"CHURC1,CHURC1-FNTB,SPTB"
TCGA.AG.3909.01A	14	65241063	65527861	45	0.5869	SMALL-GAIN	FOCAL	7	"CHURC1,CHURC1-FNTB,FNTB,GPX2,MAX,RAB15,SPTB"
TCGA.CK.5914.01A	14	65270278	65499275	22	0.4822	SMALL-GAIN	FOCAL	7	"CHURC1,CHURC1-FNTB,FNTB,GPX2,MAX,RAB15,SPTB"
TCGA.A6.6649	14	66219516	66249063	21	0.5368	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	14	66975176	67790397	41	0.5348	SMALL-GAIN	FOCAL	3	"FAM71D,GPHN,MPP5"
TCGA.AA.A00Q.01A	14	67768044	67799450	11	0.5995	SMALL-GAIN	FOCAL	1	MPP5
TCGA.AA.A00Q.01A	14	67826308	67854893	10	0.5229	SMALL-GAIN	FOCAL	3	"ATP6V1D,EIF2S1,PLEK2"
TCGA.AA.A00N.01A	14	67826308	68046390	38	0.4612	SMALL-GAIN	FOCAL	5	"ATP6V1D,EIF2S1,PLEK2,PLEKHH1,TMEM229B"
TCGA.CK.5914.01A	14	67859005	68022492	9	0.5107	SMALL-GAIN	FOCAL	3	"PLEK2,PLEKHH1,TMEM229B"
TCGA.AG.3909.01A	14	68162282	68251735	32	0.6189	SMALL-GAIN	FOCAL	3	"RDH11,RDH12,ZFYVE26"
TCGA.CK.5914.01A	14	68195860	68251735	26	0.5855	SMALL-GAIN	FOCAL	2	"RDH12,ZFYVE26"
TCGA.AA.A00N.01A	14	69352095	70177612	73	0.5729	SMALL-GAIN	FOCAL	9	"ACTN1,CCDC177,DCAF5,ERH,EXD2,GALNT16,PLEKHD1,SLC39A9,SUSD6"
TCGA.AG.3909.01A	14	69352095	70177612	58	0.4777	SMALL-GAIN	FOCAL	9	"ACTN1,CCDC177,DCAF5,ERH,EXD2,GALNT16,PLEKHD1,SLC39A9,SUSD6"
TCGA.CK.5914.01A	14	69352095	70177612	73	0.4185	SMALL-GAIN	FOCAL	9	"ACTN1,CCDC177,DCAF5,ERH,EXD2,GALNT16,PLEKHD1,SLC39A9,SUSD6"
TCGA.AA.A010.01A	14	69890761	70461056	41	0.4023	SMALL-GAIN	FOCAL	7	"CCDC177,PLEKHD1,SLC10A1,SLC39A9,SMOC1,SRSF5,SUSD6"
TCGA.AG.3909.01A	14	70245902	70346348	4	0.3883	SMALL-GAIN	FOCAL	2	"SLC10A1,SMOC1"
TCGA.CK.5914.01A	14	70245902	71052408	37	0.3939	SMALL-GAIN	FOCAL	9	"ADAM20,ADAM21,COX16,MED6,SLC10A1,SLC8A3,SMOC1,SYNJ2BP,SYNJ2BP-COX16"
TCGA.A6.6648	14	71150420	71167674	8	0.651	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	14	72137795	73586377	79	0.6613	SMALL-GAIN	FOCAL	6	"DCAF4,DPF3,RBM25,RGS6,SIPA1L1,ZFYVE1"
TCGA.AA.3941	14	72438374	72572213	90	0.4273	SMALL-GAIN	FOCAL	1	RGS6
TCGA.AA.3941	14	72578650	72669141	57	0.4678	SMALL-GAIN	FOCAL	1	RGS6
TCGA.AA.3831	14	73170980	73216916	20	0.421	SMALL-GAIN	FOCAL	1	DPF3
TCGA.AA.A00N.01A	14	73418459	73422189	3	0.4168	SMALL-GAIN	FOCAL	1	DCAF4
TCGA.AA.A00Q.01A	14	73448447	73683787	30	0.4184	SMALL-GAIN	FOCAL	3	"PSEN1,RBM25,ZFYVE1"
TCGA.AA.3986	14	73494614	73544617	8	0.6694	SMALL-GAIN	FOCAL	1	RBM25
TCGA.AA.A00L.01A	14	73544029	73580956	14	0.438	SMALL-GAIN	FOCAL	1	RBM25
TCGA.AA.A010.01A	14	73706427	73957671	36	0.4499	SMALL-GAIN	FOCAL	4	"C14orf169,HEATR4,NUMB,PAPLN"
TCGA.AA.A010.01A	14	74325498	74376002	16	0.3896	SMALL-GAIN	FOCAL	2	"PTGR2,ZNF410"
TCGA.AA.A010.01A	14	74424801	74433574	5	0.4613	SMALL-GAIN	FOCAL	2	"COQ6,ENTPD5"
TCGA.AA.A010.01A	14	74537866	74826235	35	0.5848	SMALL-GAIN	FOCAL	5	"ABCD4,ALDH6A1,LIN52,VRTN,VSX2"
TCGA.AG.3909.01A	14	74977898	75329239	63	0.4362	SMALL-GAIN	FOCAL	5	"AREL1,FCF1,LTBP2,PROX2,YLPM1"
TCGA.AA.A00N.01A	14	75052520	75348592	50	0.5013	SMALL-GAIN	FOCAL	5	"AREL1,FCF1,LTBP2,PROX2,YLPM1"
TCGA.AA.A00N.01A	14	75904582	76112681	15	0.5682	SMALL-GAIN	FOCAL	3	"BATF,FLVCR2,JDP2"
TCGA.CK.5914.01A	14	76147843	76549784	46	0.4746	SMALL-GAIN	FOCAL	3	"IFT43,TGFB3,TTLL5"
TCGA.AA.A01Q.01A	14	76230911	76429612	17	0.5414	SMALL-GAIN	FOCAL	2	"TGFB3,TTLL5"
TCGA.AA.A00N.01A	14	76488630	76966955	26	0.6224	SMALL-GAIN	FOCAL	3	"ESRRB,GPATCH2L,IFT43"
TCGA.AG.3909.01A	14	77302503	77493478	14	0.4356	SMALL-GAIN	FOCAL	2	"IRF2BPL,LRRC74A"
TCGA.AG.3909.01A	14	77600019	77722869	19	0.5522	SMALL-GAIN	FOCAL	2	"TMEM63C,ZDHHC22"
TCGA.AA.A010.01A	14	77719604	77746114	10	0.4749	SMALL-GAIN	FOCAL	3	"NGB,POMT2,TMEM63C"
TCGA.AG.3909.01A	14	77762465	77770983	6	0.4427	SMALL-GAIN	FOCAL	1	POMT2
TCGA.AG.3909.01A	14	77793757	77817968	11	0.4182	SMALL-GAIN	FOCAL	2	"GSTZ1,TMED8"
TCGA.AA.A00D.01A	14	77935378	78197284	30	0.4059	SMALL-GAIN	FOCAL	6	"AHSA1,ALKBH1,ISM2,SLIRP,SNW1,SPTLC2"
TCGA.AG.3909.01A	14	78018422	78174125	14	0.4967	SMALL-GAIN	FOCAL	2	"ALKBH1,SPTLC2"
TCGA.CK.5914.01A	14	78288723	81329054	46	0.4661	SMALL-GAIN	FOCAL	4	"ADCK1,CEP128,DIO2,NRXN3"
TCGA.AA.3941	14	78410716	78602933	99	0.4961	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	14	78614216	78722066	59	0.4995	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	14	81736901	86092189	30	0.6424	SMALL-GAIN	FOCAL	3	"FLRT2,SEL1L,STON2"
TCGA.EI.6883	14	84255341	84256552	2	0.6725	SMALL-GAIN	FOCAL	0	None
TCGA.EI.6883	14	84340127	84351972	5	0.4978	SMALL-GAIN	FOCAL	0	None
TCGA.DY.A1DC	14	85792357	85873932	32	0.4314	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3611.01A	14	88883008	88903813	7	0.4049	SMALL-GAIN	FOCAL	1	SPATA7
TCGA.CK.5914.01A	14	89061093	89148187	32	0.3855	SMALL-GAIN	FOCAL	2	"EML5,ZC3H14"
TCGA.AA.A00N.01A	14	89061093	89206694	48	0.6541	SMALL-GAIN	FOCAL	2	"EML5,ZC3H14"
TCGA.CK.5914.01A	14	89212487	89747226	21	0.4053	SMALL-GAIN	FOCAL	3	"EML5,FOXN3,TTC8"
TCGA.AG.A01W.01A	14	90808814	90830243	8	0.4514	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	14	91007665	91691018	47	0.4809	SMALL-GAIN	FOCAL	3	"C14orf159,RPS6KA5,TTC7B"
TCGA.AG.A011.01A	14	91745530	91779373	12	0.3792	SMALL-GAIN	FOCAL	1	CCDC88C
TCGA.AA.A00N.01A	14	92074591	92361245	38	0.5961	SMALL-GAIN	FOCAL	3	"CATSPERB,FBLN5,TC2N"
TCGA.AA.A00N.01A	14	92435979	92537231	24	0.5437	SMALL-GAIN	FOCAL	2	"ATXN3,TRIP11"
TCGA.AG.3909.01A	14	92900193	93107532	19	0.5722	SMALL-GAIN	FOCAL	2	"RIN3,SLC24A4"
TCGA.AA.A010.01A	14	93263736	93290839	8	0.5908	SMALL-GAIN	FOCAL	1	GOLGA5
TCGA.AA.A00D.01A	14	93290839	93649510	22	0.4714	SMALL-GAIN	FOCAL	4	"CHGA,GOLGA5,ITPK1,MOAP1"
TCGA.AM.5820	14	93354843	93576542	60	0.5464	SMALL-GAIN	FOCAL	2	"CHGA,ITPK1"
TCGA.AA.A010.01A	14	93429067	93542852	4	0.5176	SMALL-GAIN	FOCAL	1	ITPK1
TCGA.AA.A00L.01A	14	93673599	93693234	10	0.421	SMALL-GAIN	FOCAL	1	UBR7
TCGA.AG.3909.01A	14	93727908	94173038	52	0.4655	SMALL-GAIN	FOCAL	3	"BTBD7,COX8C,UNC79"
TCGA.AZ.4684.01A	14	93754921	94128902	41	0.4245	SMALL-GAIN	FOCAL	3	"BTBD7,COX8C,UNC79"
TCGA.AA.3850	14	94171858	94612517	220	0.40065	SMALL-GAIN	FOCAL	9	"ASB2,DDX24,FAM181A,IFI27,IFI27L1,IFI27L2,OTUB2,PRIMA1,UNC79"
TCGA.DM.A28M.01A	14	94640751	94752393	28	0.5564	SMALL-GAIN	FOCAL	2	"PPP4R4,SERPINA10"
TCGA.AA.A00N.01A	14	96703385	96800694	37	0.6016	SMALL-GAIN	FOCAL	3	"ATG2B,BDKRB1,BDKRB2"
TCGA.AA.3941	14	96856578	97255289	126	0.6669	SMALL-GAIN	FOCAL	2	"AK7,PAPOLA"
TCGA.D5.6539	14	97991916	98018960	16	0.5306	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	14	99053052	99546218	322	0.5424	SMALL-GAIN	FOCAL	1	C14orf177
TCGA.AG.A01W.01A	14	100074031	100270328	9	0.4642	SMALL-GAIN	FOCAL	3	"CYP46A1,EML1,HHIPL1"
TCGA.AG.3909.01A	14	100406283	100595858	9	0.5947	SMALL-GAIN	FOCAL	2	"EML1,EVL"
TCGA.AG.3906.01A	14	100615268	100828017	19	0.5842	SMALL-GAIN	FOCAL	5	"DEGS2,SLC25A29,SLC25A47,WARS,YY1"
TCGA.AM.5820	14	101467521	101669781	97	0.4312	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	14	101467521	101910777	190	0.5754	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	14	101488339	101512198	19	0.4496	SMALL-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	14	101515836	102026586	14	0.5279	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	14	101528322	101533020	5	0.4503	SMALL-GAIN	FOCAL	0	None
TCGA.AM.5820	14	101930416	102114688	51	0.5276	SMALL-GAIN	FOCAL	1	DIO3
TCGA.AA.A00Q.01A	14	102368015	102467823	22	0.4566	SMALL-GAIN	FOCAL	2	"DYNC1H1,PPP2R5C"
TCGA.AA.3861.01A	14	102368015	102568185	72	0.3949	SMALL-GAIN	FOCAL	3	"DYNC1H1,HSP90AA1,PPP2R5C"
TCGA.AA.A00N.01A	14	102463365	102516356	43	0.5019	SMALL-GAIN	FOCAL	1	DYNC1H1
TCGA.AA.A010.01A	14	102470808	102516745	39	0.5538	SMALL-GAIN	FOCAL	1	DYNC1H1
TCGA.AA.A01Q.01A	14	103388981	103420884	13	0.5308	SMALL-GAIN	FOCAL	2	"AMN,CDC42BPB"
TCGA.AA.A00Q.01A	14	103390040	103425946	12	0.5753	SMALL-GAIN	FOCAL	2	"AMN,CDC42BPB"
TCGA.AA.A010.01A	14	103429348	103478398	17	0.4687	SMALL-GAIN	FOCAL	1	CDC42BPB
TCGA.AA.A010.01A	14	103852293	103958107	15	0.4482	SMALL-GAIN	FOCAL	1	MARK3
TCGA.AG.3909.01A	14	103894649	103998882	18	0.5187	SMALL-GAIN	FOCAL	3	"CKB,MARK3,TRMT61A"
TCGA.AA.A00N.01A	14	104251084	104263671	2	0.5229	SMALL-GAIN	FOCAL	1	PPP1R13B
TCGA.A6.3808.01A	14	104431623	104558921	32	0.6246	SMALL-GAIN	FOCAL	2	"ASPG,TDRD9"
TCGA.AA.A00N.01A	14	104431623	104558921	32	0.4425	SMALL-GAIN	FOCAL	2	"ASPG,TDRD9"
TCGA.A6.3808.01A	14	106307296	106329338	10	0.4485	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	14	106329972	106405602	32	0.6506	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3862.01A	14	106329972	107282751	92	0.5387	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	14	106452714	106725295	20	0.6034	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01Y	14	107177930	107285436	30	0.3844	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3695	14	107284479	107285436	2	0.5338	SMALL-GAIN	FOCAL	0	None
TCGA.G4.6310	15	20143408	20192010	6	0.4796	SMALL-GAIN	FOCAL	0	None
TCGA.EI.6513	15	20143408	22558424	16	0.4693	SMALL-GAIN	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AG.4009.01A	15	20588543	20663173	11	0.5408	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	15	20588543	22833478	16	0.5617	SMALL-GAIN	FOCAL	9	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.A00Q.01A	15	20588543	22939124	33	0.672	SMALL-GAIN	FOCAL	10	"CYFIP1,GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.A010.01A	15	22925745	23052553	35	0.5665	SMALL-GAIN	FOCAL	3	"CYFIP1,NIPA1,NIPA2"
TCGA.EI.6513	15	23654206	26053301	781	0.4444	SMALL-GAIN	FOCAL	9	"ATP10A,GOLGA6L2,MAGEL2,MKRN3,NDN,NPAP1,SNRPN,SNURF,UBE3A"
TCGA.D5.6535	15	24386622	24433947	11	0.4275	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	15	25200104	26866422	45	0.5298	SMALL-GAIN	FOCAL	5	"ATP10A,GABRB3,SNRPN,SNURF,UBE3A"
TCGA.AA.A00N.01A	15	25219503	26828424	41	0.6225	SMALL-GAIN	FOCAL	5	"ATP10A,GABRB3,SNRPN,SNURF,UBE3A"
TCGA.AA.A00N.01A	15	28389769	28473327	30	0.5296	SMALL-GAIN	FOCAL	1	HERC2
TCGA.CK.5914.01A	15	28460750	28483765	11	0.6009	SMALL-GAIN	FOCAL	1	HERC2
TCGA.AA.A02K.01A	15	28499540	29400427	28	0.5657	SMALL-GAIN	FOCAL	3	"APBA2,GOLGA8M,HERC2"
TCGA.A6.3808.01A	15	31212701	32323084	65	0.3904	SMALL-GAIN	FOCAL	7	"CHRNA7,FAN1,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.AA.A010.01A	15	31818501	33765583	53	0.5847	SMALL-GAIN	FOCAL	10	"ARHGAP11A,CHRNA7,FMN1,GOLGA8K,GOLGA8N,GOLGA8O,GREM1,OTUD7A,RYR3,SCG5"
TCGA.D5.6538	15	31823107	33706589	636	0.3797	SMALL-GAIN	FOCAL	10	"ARHGAP11A,CHRNA7,FMN1,GOLGA8K,GOLGA8N,GOLGA8O,GREM1,OTUD7A,RYR3,SCG5"
TCGA.AA.A00N.01A	15	33066437	33300157	16	0.5683	SMALL-GAIN	FOCAL	1	FMN1
TCGA.CK.5914.01A	15	33068992	34134037	107	0.3786	SMALL-GAIN	FOCAL	2	"FMN1,RYR3"
TCGA.AA.A010.01A	15	33925103	34446777	101	0.5091	SMALL-GAIN	FOCAL	6	"AVEN,CHRM5,EMC7,KATNBL1,PGBD4,RYR3"
TCGA.AA.A00N.01A	15	34092928	34553073	87	0.5242	SMALL-GAIN	FOCAL	8	"AVEN,CHRM5,EMC4,EMC7,KATNBL1,PGBD4,RYR3,SLC12A6"
TCGA.AA.A010.01A	15	34536158	34567482	14	0.5802	SMALL-GAIN	FOCAL	1	SLC12A6
TCGA.AG.A00C.01A	15	34628572	34657743	21	0.4132	SMALL-GAIN	FOCAL	4	"LPCAT4,NOP10,NUTM1,SLC12A6"
TCGA.AG.A015.01A	15	34653552	34657743	7	0.4557	SMALL-GAIN	FOCAL	1	LPCAT4
TCGA.AA.3941	15	35078006	35413423	99	0.4477	SMALL-GAIN	FOCAL	3	"ACTC1,AQR,ZNF770"
TCGA.CK.5914.01A	15	35086830	35174676	10	0.6743	SMALL-GAIN	FOCAL	2	"ACTC1,AQR"
TCGA.AG.A00C.01A	15	35226728	35274918	12	0.4472	SMALL-GAIN	FOCAL	2	"AQR,ZNF770"
TCGA.AA.A00Q.01A	15	35273622	35702990	6	0.6409	SMALL-GAIN	FOCAL	2	"DPH6,ZNF770"
TCGA.AA.A00N.01A	15	35664277	37002010	19	0.6494	SMALL-GAIN	FOCAL	2	"C15orf41,DPH6"
TCGA.AG.3906.01A	15	37385735	37391575	6	0.4479	SMALL-GAIN	FOCAL	1	MEIS2
TCGA.AG.A00C.01A	15	37385735	37391575	6	0.4482	SMALL-GAIN	FOCAL	1	MEIS2
TCGA.AA.A00Q.01A	15	37391575	38988758	26	0.6166	SMALL-GAIN	FOCAL	5	"FAM98B,MEIS2,RASGRP1,SPRED1,TMCO5A"
TCGA.CK.5914.01A	15	38228473	39544329	44	0.5676	SMALL-GAIN	FOCAL	6	"C15orf53,C15orf54,FAM98B,RASGRP1,SPRED1,TMCO5A"
TCGA.AG.A01W.01A	15	39580925	39592166	12	0.6264	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	15	39602379	39644426	42	0.5868	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	15	39916275	40229514	116	0.3948	SMALL-GAIN	FOCAL	3	"EIF2AK4,FSIP1,GPR176"
TCGA.AG.A01W.01A	15	40240185	40338359	38	0.4936	SMALL-GAIN	FOCAL	2	"EIF2AK4,SRP14"
TCGA.AF.3914.01A	15	40313078	40331015	13	0.5834	SMALL-GAIN	FOCAL	2	"EIF2AK4,SRP14"
TCGA.AA.3872	15	40389682	40596843	45	0.4878	SMALL-GAIN	FOCAL	6	"ANKRD63,BMF,BUB1B,C15orf56,PAK6,PLCB2"
TCGA.AG.A01W.01A	15	40487674	40504284	14	0.3921	SMALL-GAIN	FOCAL	1	BUB1B
TCGA.AG.3906.01A	15	40580879	40659268	31	0.4986	SMALL-GAIN	FOCAL	5	"C15orf52,DISP2,INAFM2,PHGR1,PLCB2"
TCGA.AA.A010.01A	15	41044156	41108127	27	0.6515	SMALL-GAIN	FOCAL	6	"C15orf62,DNAJC17,GCHFR,PPP1R14D,RMDN3,ZFYVE19"
TCGA.AG.3891.01A	15	41365570	41657578	37	0.5188	SMALL-GAIN	FOCAL	5	"CHP1,EXD1,INO80,NUSAP1,OIP5"
TCGA.AA.A00D.01A	15	41509237	41772762	32	0.4915	SMALL-GAIN	FOCAL	6	"CHP1,EXD1,NDUFAF1,NUSAP1,OIP5,RTF1"
TCGA.AG.A00C.01A	15	41549047	41796944	44	0.423	SMALL-GAIN	FOCAL	7	"CHP1,ITPKA,LTK,NDUFAF1,NUSAP1,OIP5,RTF1"
TCGA.AG.A01W.01A	15	41549351	41560349	7	0.3841	SMALL-GAIN	FOCAL	1	CHP1
TCGA.AG.3891.01A	15	41687035	41865835	65	0.6009	SMALL-GAIN	FOCAL	6	"ITPKA,LTK,NDUFAF1,RPAP1,RTF1,TYRO3"
TCGA.AG.3906.01A	15	41799261	41814249	7	0.583	SMALL-GAIN	FOCAL	2	"LTK,RPAP1"
TCGA.AG.3906.01A	15	41854699	41870124	15	0.4742	SMALL-GAIN	FOCAL	1	TYRO3
TCGA.AA.A00N.01A	15	41983731	42041297	15	0.5097	SMALL-GAIN	FOCAL	1	MGA
TCGA.CK.5914.01A	15	42091965	42109545	14	0.514	SMALL-GAIN	FOCAL	1	MAPKBP1
TCGA.AA.A00L.01A	15	42091965	42113775	20	0.5682	SMALL-GAIN	FOCAL	1	MAPKBP1
TCGA.AA.A010.01A	15	42115148	42126891	6	0.6249	SMALL-GAIN	FOCAL	3	"JMJD7,JMJD7-PLA2G4B,MAPKBP1"
TCGA.AA.A00L.01A	15	42360862	42749134	143	0.5374	SMALL-GAIN	FOCAL	7	"CAPN3,GANC,PLA2G4D,PLA2G4F,TMEM87A,VPS39,ZNF106"
TCGA.CK.5914.01A	15	42386559	42500214	43	0.5728	SMALL-GAIN	FOCAL	3	"PLA2G4D,PLA2G4F,VPS39"
TCGA.AA.A00N.01A	15	42452892	42749134	110	0.6627	SMALL-GAIN	FOCAL	5	"CAPN3,GANC,TMEM87A,VPS39,ZNF106"
TCGA.AA.A010.01A	15	42452892	42841026	123	0.5341	SMALL-GAIN	FOCAL	8	"CAPN3,GANC,HAUS2,LRRC57,SNAP23,TMEM87A,VPS39,ZNF106"
TCGA.AA.3872	15	42584060	42815732	56	0.4979	SMALL-GAIN	FOCAL	4	"CAPN3,GANC,SNAP23,ZNF106"
TCGA.CK.5914.01A	15	42589745	42646529	20	0.4524	SMALL-GAIN	FOCAL	1	GANC
TCGA.AG.A01W.01A	15	42645328	42654346	8	0.5757	SMALL-GAIN	FOCAL	2	"CAPN3,GANC"
TCGA.AA.A00D.01A	15	42803984	42858806	17	0.5295	SMALL-GAIN	FOCAL	3	"HAUS2,LRRC57,SNAP23"
TCGA.AA.A00Q.01A	15	43242413	43352181	40	0.6736	SMALL-GAIN	FOCAL	1	UBR1
TCGA.AA.A00D.01A	15	43242413	43498501	73	0.3924	SMALL-GAIN	FOCAL	4	"CCNDBP1,EPB42,TMEM62,UBR1"
TCGA.AG.A00C.01A	15	43276057	43314848	12	0.6118	SMALL-GAIN	FOCAL	1	UBR1
TCGA.AA.A00L.01A	15	43290349	43621006	95	0.419	SMALL-GAIN	FOCAL	7	"CCNDBP1,EPB42,LCMT2,TGM5,TGM7,TMEM62,UBR1"
TCGA.AG.A00C.01A	15	43350487	43489463	34	0.5342	SMALL-GAIN	FOCAL	4	"CCNDBP1,EPB42,TMEM62,UBR1"
TCGA.AG.A01W.01A	15	43441549	43484797	9	0.5902	SMALL-GAIN	FOCAL	2	"CCNDBP1,TMEM62"
TCGA.AA.A00N.01A	15	43544915	43574664	11	0.5773	SMALL-GAIN	FOCAL	2	"TGM5,TGM7"
TCGA.AA.A00Q.01A	15	43584860	43641063	13	0.5914	SMALL-GAIN	FOCAL	3	"ADAL,LCMT2,TGM7"
TCGA.AA.A00N.01A	15	43678367	43701805	14	0.5498	SMALL-GAIN	FOCAL	2	"TP53BP1,TUBGCP4"
TCGA.AA.A010.01A	15	43704831	43909587	61	0.6141	SMALL-GAIN	FOCAL	5	"CKMT1B,MAP1A,PPIP5K1,STRC,TP53BP1"
TCGA.AA.A00L.01A	15	43730468	43784460	16	0.6017	SMALL-GAIN	FOCAL	1	TP53BP1
TCGA.AA.A00Q.01A	15	43831617	44065264	40	0.5912	SMALL-GAIN	FOCAL	7	"CATSPER2,CKMT1A,CKMT1B,ELL3,PDIA3,PPIP5K1,STRC"
TCGA.AG.A00C.01A	15	44038696	44067943	17	0.4329	SMALL-GAIN	FOCAL	2	"ELL3,PDIA3"
TCGA.CK.5914.01A	15	44134596	44581181	23	0.4408	SMALL-GAIN	FOCAL	3	"CASC4,FRMD5,WDR76"
TCGA.AA.A00D.01A	15	44615119	44856748	28	0.4695	SMALL-GAIN	FOCAL	4	"CASC4,CTDSPL2,EIF3J,SPG11"
TCGA.AA.A00L.01A	15	44855281	44890424	18	0.4491	SMALL-GAIN	FOCAL	1	SPG11
TCGA.AA.A00N.01A	15	44877812	44925666	22	0.483	SMALL-GAIN	FOCAL	1	SPG11
TCGA.CK.5914.01A	15	45353228	45393939	19	0.4613	SMALL-GAIN	FOCAL	2	"DUOX2,SORD"
TCGA.AG.A016.01A	15	45399522	45409675	12	0.3869	SMALL-GAIN	FOCAL	3	"DUOX2,DUOXA1,DUOXA2"
TCGA.AA.A00D.01A	15	45654256	45803309	25	0.5414	SMALL-GAIN	FOCAL	4	"C15orf48,GATM,SLC30A4,SPATA5L1"
TCGA.AG.A00C.01A	15	45697516	45725134	10	0.6538	SMALL-GAIN	FOCAL	2	"C15orf48,SPATA5L1"
TCGA.AA.A00L.01A	15	45702518	45898576	23	0.659	SMALL-GAIN	FOCAL	4	"BLOC1S6,C15orf48,SLC30A4,SPATA5L1"
TCGA.CK.5914.01A	15	48051948	48451773	31	0.6758	SMALL-GAIN	FOCAL	3	"MYEF2,SEMA6D,SLC24A5"
TCGA.AA.A00N.01A	15	48056000	48441168	17	0.622	SMALL-GAIN	FOCAL	3	"MYEF2,SEMA6D,SLC24A5"
TCGA.AA.3509.01A	15	48056788	48434199	14	0.5418	SMALL-GAIN	FOCAL	3	"MYEF2,SEMA6D,SLC24A5"
TCGA.AA.A00D.01A	15	48559708	48634150	14	0.5457	SMALL-GAIN	FOCAL	2	"DUT,SLC12A1"
TCGA.CK.5914.01A	15	48748794	48773801	12	0.3979	SMALL-GAIN	FOCAL	1	FBN1
TCGA.CK.5914.01A	15	48795933	49036398	20	0.509	SMALL-GAIN	FOCAL	2	"CEP152,FBN1"
TCGA.AA.A02H.01A	15	49291991	49429299	21	0.546	SMALL-GAIN	FOCAL	2	"COPS2,SECISBP2L"
TCGA.AA.A010.01A	15	49325115	49716463	32	0.5524	SMALL-GAIN	FOCAL	5	"COPS2,FAM227B,FGF7,GALK2,SECISBP2L"
TCGA.AG.A01W.01A	15	49615126	49625021	6	0.6744	SMALL-GAIN	FOCAL	2	"FAM227B,GALK2"
TCGA.AA.A010.01A	15	49880155	49917313	5	0.5302	SMALL-GAIN	FOCAL	2	"DTWD1,FAM227B"
TCGA.AA.A010.01A	15	50209104	50366257	18	0.4717	SMALL-GAIN	FOCAL	1	ATP8B4
TCGA.AA.A010.01A	15	50515121	50940867	82	0.5369	SMALL-GAIN	FOCAL	6	"GABPB1,HDC,SLC27A2,TRPM7,USP50,USP8"
TCGA.AG.3909.01A	15	50540394	50557715	9	0.4269	SMALL-GAIN	FOCAL	1	HDC
TCGA.AA.3941	15	51159834	51680556	184	0.4692	SMALL-GAIN	FOCAL	4	"AP4E1,CYP19A1,GLDN,TNFAIP8L3"
TCGA.CK.5914.01A	15	51221159	51689650	30	0.5422	SMALL-GAIN	FOCAL	4	"AP4E1,CYP19A1,GLDN,TNFAIP8L3"
TCGA.AA.A00N.01A	15	51222992	51988035	81	0.6327	SMALL-GAIN	FOCAL	6	"AP4E1,CYP19A1,DMXL2,GLDN,SCG3,TNFAIP8L3"
TCGA.AA.A010.01A	15	51519938	51806616	38	0.5883	SMALL-GAIN	FOCAL	3	"CYP19A1,DMXL2,GLDN"
TCGA.AA.3509.01A	15	51770410	51799284	11	0.4093	SMALL-GAIN	FOCAL	1	DMXL2
TCGA.CK.5914.01A	15	51809233	51973892	15	0.409	SMALL-GAIN	FOCAL	2	"DMXL2,SCG3"
TCGA.AA.A00D.01A	15	51981367	52200889	27	0.4577	SMALL-GAIN	FOCAL	4	"LYSMD2,SCG3,TMOD2,TMOD3"
TCGA.AA.3941	15	52154294	52704377	154	0.5621	SMALL-GAIN	FOCAL	7	"BCL2L10,GNB5,LEO1,MAPK6,MYO5A,MYO5C,TMOD3"
TCGA.AG.A00C.01A	15	52548780	52605845	12	0.462	SMALL-GAIN	FOCAL	2	"MYO5A,MYO5C"
TCGA.AA.3941	15	52712987	52881316	56	0.5644	SMALL-GAIN	FOCAL	3	"ARPP19,FAM214A,MYO5A"
TCGA.AA.A00A.01A	15	52844090	54014952	23	0.4753	SMALL-GAIN	FOCAL	4	"ARPP19,FAM214A,ONECUT1,WDR72"
TCGA.AA.3941	15	53007668	53179008	69	0.4439	SMALL-GAIN	FOCAL	1	ONECUT1
TCGA.AA.3941	15	53216698	53252040	29	0.4424	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	15	54180804	54526285	24	0.4579	SMALL-GAIN	FOCAL	1	UNC13C
TCGA.AZ.4684.01A	15	54556324	55477494	26	0.6487	SMALL-GAIN	FOCAL	2	"RSL24D1,UNC13C"
TCGA.AA.A00A.01A	15	55474378	56207453	43	0.528	SMALL-GAIN	FOCAL	10	"C15orf65,CCPG1,DYX1C1,NEDD4,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RSL24D1"
TCGA.AG.A00C.01A	15	55710291	55759086	7	0.5723	SMALL-GAIN	FOCAL	2	"C15orf65,DYX1C1"
TCGA.AG.3611.01A	15	55759086	55789863	3	0.4104	SMALL-GAIN	FOCAL	1	DYX1C1
TCGA.AA.A00N.01A	15	55790357	56243550	47	0.4254	SMALL-GAIN	FOCAL	4	"DYX1C1,NEDD4,PRTG,PYGO1"
TCGA.AZ.4684.01A	15	56395703	56968828	29	0.6112	SMALL-GAIN	FOCAL	4	"MNS1,RFX7,TEX9,ZNF280D"
TCGA.AA.A00N.01A	15	56434939	57998989	93	0.6115	SMALL-GAIN	FOCAL	9	"CGNL1,GCOM1,MNS1,MYZAP,POLR2M,RFX7,TCF12,TEX9,ZNF280D"
TCGA.AA.A00A.01A	15	56676103	57545449	50	0.5758	SMALL-GAIN	FOCAL	4	"MNS1,TCF12,TEX9,ZNF280D"
TCGA.AA.3930.01A	15	57838242	57929841	10	0.5252	SMALL-GAIN	FOCAL	3	"CGNL1,GCOM1,MYZAP"
TCGA.AA.A00N.01A	15	59322985	59931250	62	0.5731	SMALL-GAIN	FOCAL	7	"CCNB2,FAM81A,GCNT3,GTF2A2,LDHAL6B,MYO1E,RNF111"
TCGA.AG.A01W.01A	15	59942888	59969620	15	0.3816	SMALL-GAIN	FOCAL	2	"BNIP2,GTF2A2"
TCGA.AG.A01W.01A	15	60001868	60043278	23	0.384	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	15	60689991	60850367	25	0.4238	SMALL-GAIN	FOCAL	3	"ANXA2,ICE2,RORA"
TCGA.AZ.4684.01A	15	62148434	62270778	56	0.4606	SMALL-GAIN	FOCAL	1	VPS13C
TCGA.AA.A01I.01A	15	62155583	62270778	59	0.3923	SMALL-GAIN	FOCAL	1	VPS13C
TCGA.CK.5914.01A	15	62167894	62176289	7	0.4461	SMALL-GAIN	FOCAL	1	VPS13C
TCGA.CK.5914.01A	15	62238489	62261457	17	0.646	SMALL-GAIN	FOCAL	1	VPS13C
TCGA.AA.3518	15	63057391	63105579	29	0.3961	SMALL-GAIN	FOCAL	1	TLN2
TCGA.AA.A00D.01A	15	63351715	63555686	22	0.4598	SMALL-GAIN	FOCAL	4	"LACTB,RAB8B,RPS27L,TPM1"
TCGA.AA.A010.01A	15	63481777	63673816	25	0.5529	SMALL-GAIN	FOCAL	3	"APH1B,CA12,RAB8B"
TCGA.AA.A00A.01A	15	63569774	63882843	30	0.5272	SMALL-GAIN	FOCAL	3	"APH1B,CA12,USP3"
TCGA.AG.3731	15	64033036	64421597	126	0.4111	SMALL-GAIN	FOCAL	4	"DAPK2,FAM96A,HERC1,SNX1"
TCGA.AA.A00A.01A	15	64066861	64444786	33	0.5233	SMALL-GAIN	FOCAL	5	"DAPK2,FAM96A,HERC1,SNX1,SNX22"
TCGA.AA.A00L.01A	15	64204062	64428994	28	0.624	SMALL-GAIN	FOCAL	3	"DAPK2,FAM96A,SNX1"
TCGA.AA.A00A.01A	15	64495229	65042464	40	0.6068	SMALL-GAIN	FOCAL	6	"CSNK1G1,KIAA0101,OAZ2,RBPMS2,TRIP4,ZNF609"
TCGA.AG.3906.01A	15	65040588	65114428	13	0.5221	SMALL-GAIN	FOCAL	2	"PIF1,RBPMS2"
TCGA.AA.A00N.01A	15	65147080	65266903	23	0.4272	SMALL-GAIN	FOCAL	3	"ANKDD1A,PLEKHO2,SPG21"
TCGA.AA.A00N.01A	15	65477351	65628111	27	0.6087	SMALL-GAIN	FOCAL	4	"CILP,CLPX,IGDCC3,PARP16"
TCGA.AG.A00C.01A	15	65677253	65703311	15	0.4081	SMALL-GAIN	FOCAL	1	IGDCC4
TCGA.AA.A00A.01A	15	65739175	65916977	32	0.6765	SMALL-GAIN	FOCAL	4	"DPP8,HACD3,SLC24A1,VWA9"
TCGA.AA.A010.01A	15	65756077	66198361	85	0.4229	SMALL-GAIN	FOCAL	7	"DENND4A,DPP8,HACD3,MEGF11,RAB11A,SLC24A1,VWA9"
TCGA.AA.A00N.01A	15	65916977	66420592	66	0.6387	SMALL-GAIN	FOCAL	4	"DENND4A,MEGF11,RAB11A,SLC24A1"
TCGA.AA.A00A.01A	15	66169619	66857538	96	0.617	SMALL-GAIN	FOCAL	9	"DIS3L,LCTL,MAP2K1,MEGF11,RAB11A,RPL4,SNAPC5,TIPIN,ZWILCH"
TCGA.CK.5914.01A	15	66179992	66629269	38	0.4021	SMALL-GAIN	FOCAL	4	"DIS3L,MEGF11,RAB11A,TIPIN"
TCGA.AA.A01Q.01A	15	66795345	66995548	33	0.3994	SMALL-GAIN	FOCAL	4	"LCTL,RPL4,SMAD6,ZWILCH"
TCGA.AM.5820	15	68072380	68148841	23	0.4537	SMALL-GAIN	FOCAL	2	"MAP2K5,SKOR1"
TCGA.CK.5914.01A	15	68595335	69076686	44	0.6129	SMALL-GAIN	FOCAL	3	"ANP32A,CORO2B,ITGA11"
TCGA.AA.A00L.01A	15	69341252	69714291	18	0.3903	SMALL-GAIN	FOCAL	4	"GLCE,KIF23,NOX5,PAQR5"
TCGA.AG.A00C.01A	15	69689769	70345518	29	0.4876	SMALL-GAIN	FOCAL	4	"KIF23,PAQR5,RPLP1,TLE3"
TCGA.AG.A01W.01A	15	70336690	71953047	140	0.4088	SMALL-GAIN	FOCAL	7	"CT62,LARP6,LRRC49,THAP10,THSD4,TLE3,UACA"
TCGA.CK.5914.01A	15	70949331	70968791	8	0.5168	SMALL-GAIN	FOCAL	1	UACA
TCGA.AA.A00N.01A	15	70949331	71128597	22	0.473	SMALL-GAIN	FOCAL	2	"LARP6,UACA"
TCGA.AA.A00N.01A	15	71203803	71341751	11	0.5372	SMALL-GAIN	FOCAL	1	LRRC49
TCGA.CM.5348	15	71797578	71998810	115	0.572	SMALL-GAIN	FOCAL	1	THSD4
TCGA.CA.6715	15	71902416	71958995	46	0.5385	SMALL-GAIN	FOCAL	1	THSD4
TCGA.AG.A01W.01A	15	72006229	72104206	17	0.6026	SMALL-GAIN	FOCAL	2	"NR2E3,THSD4"
TCGA.AA.A010.01A	15	72208663	72338408	19	0.5893	SMALL-GAIN	FOCAL	1	MYO9A
TCGA.A6.6649	15	72462830	73334992	184	0.5307	SMALL-GAIN	FOCAL	10	"ADPGK,ARIH1,BBS4,CELF6,GOLGA6B,GRAMD2,HEXA,PARP6,PKM,TMEM202"
TCGA.AG.A01W.01A	15	72538042	73008484	91	0.415	SMALL-GAIN	FOCAL	7	"ARIH1,BBS4,CELF6,GOLGA6B,HEXA,PARP6,TMEM202"
TCGA.AG.A01W.01A	15	73128497	73290103	4	0.4705	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	15	74165980	74219075	11	0.4338	SMALL-GAIN	FOCAL	2	"LOXL1,TBC1D21"
TCGA.AA.A00N.01A	15	74363209	74741490	68	0.5527	SMALL-GAIN	FOCAL	8	"CCDC33,CYP11A1,GOLGA6A,ISLR,ISLR2,SEMA7A,STRA6,UBL7"
TCGA.AA.A010.01A	15	74467173	74659619	48	0.6198	SMALL-GAIN	FOCAL	4	"CCDC33,CYP11A1,ISLR,STRA6"
TCGA.AG.3906.01A	15	75111441	75130413	12	0.3866	SMALL-GAIN	FOCAL	3	"CPLX3,LMAN1L,ULK3"
TCGA.AA.A00N.01A	15	75688549	75722480	11	0.4059	SMALL-GAIN	FOCAL	1	SIN3A
TCGA.AG.A00C.01A	15	75761060	75816517	11	0.5782	SMALL-GAIN	FOCAL	1	PTPN9
TCGA.AG.3891.01A	15	75762085	75913184	19	0.6149	SMALL-GAIN	FOCAL	2	"PTPN9,SNUPN"
TCGA.AA.A010.01A	15	76182699	76603622	36	0.5918	SMALL-GAIN	FOCAL	5	"C15orf27,ETFA,FBXO22,NRG4,UBE2Q2"
TCGA.AG.A01W.01A	15	76287358	76420412	21	0.4998	SMALL-GAIN	FOCAL	2	"C15orf27,NRG4"
TCGA.AM.5820	15	76444694	76510072	28	0.4776	SMALL-GAIN	FOCAL	2	"C15orf27,ETFA"
TCGA.AA.A00A.01A	15	77750717	78562832	50	0.4559	SMALL-GAIN	FOCAL	8	"ACSBG1,CIB2,DNAJA4,HMG20A,IDH3A,LINGO1,SH2D7,TBC1D2B"
TCGA.AM.5820	15	77797722	78302940	129	0.4858	SMALL-GAIN	FOCAL	2	"LINGO1,TBC1D2B"
TCGA.AA.A010.01A	15	78463738	78556598	14	0.5007	SMALL-GAIN	FOCAL	2	"ACSBG1,DNAJA4"
TCGA.AA.A00D.01A	15	78557051	78880619	50	0.4288	SMALL-GAIN	FOCAL	7	"CHRNA5,CRABP1,DNAJA4,HYKK,IREB2,PSMA4,WDR61"
TCGA.AA.A00L.01A	15	78582243	78758586	13	0.5072	SMALL-GAIN	FOCAL	3	"CRABP1,IREB2,WDR61"
TCGA.AA.A010.01A	15	78632764	78825510	28	0.6284	SMALL-GAIN	FOCAL	3	"CRABP1,HYKK,IREB2"
TCGA.AA.A00D.01A	15	79165283	79187105	12	0.5892	SMALL-GAIN	FOCAL	1	MORF4L1
TCGA.AA.A00N.01A	15	79265595	79502073	27	0.602	SMALL-GAIN	FOCAL	1	RASGRF1
TCGA.AG.A01W.01A	15	79411886	80310203	38	0.5959	SMALL-GAIN	FOCAL	7	"ANKRD34C,BCL2A1,KIAA1024,MTHFS,ST20,ST20-MTHFS,TMED3"
TCGA.AA.A00N.01A	15	80253360	81241086	70	0.49	SMALL-GAIN	FOCAL	6	"ABHD17C,ARNT2,BCL2A1,CEMIP,FAH,ZFAND6"
TCGA.AA.3941	15	80648724	81666845	384	0.4898	SMALL-GAIN	FOCAL	9	"ABHD17C,ARNT2,C15orf26,CEMIP,IL16,MESDC1,MESDC2,STARD5,TMC3"
TCGA.AG.A01W.01A	15	81143045	81230941	12	0.5691	SMALL-GAIN	FOCAL	1	CEMIP
TCGA.AG.A00C.01A	15	81239254	81295246	6	0.4536	SMALL-GAIN	FOCAL	3	"CEMIP,MESDC1,MESDC2"
TCGA.CK.5914.01A	15	81517722	81598729	17	0.4911	SMALL-GAIN	FOCAL	1	IL16
TCGA.AA.A010.01A	15	81552064	81654500	42	0.6121	SMALL-GAIN	FOCAL	3	"IL16,STARD5,TMC3"
TCGA.CK.5914.01A	15	81637100	82533574	30	0.5589	SMALL-GAIN	FOCAL	3	"EFTUD1,MEX3B,TMC3"
TCGA.AA.A00D.01A	15	83657734	83791487	19	0.3905	SMALL-GAIN	FOCAL	4	"BTBD1,C15orf40,FAM103A1,TM6SF1"
TCGA.AA.3941	15	85105199	86029596	202	0.606	SMALL-GAIN	FOCAL	9	"AKAP13,ALPK3,NMB,PDE8A,SEC11A,SLC28A1,WDR73,ZNF592,ZSCAN2"
TCGA.AG.A00C.01A	15	85149707	85230826	17	0.5457	SMALL-GAIN	FOCAL	4	"NMB,SEC11A,WDR73,ZSCAN2"
TCGA.AA.3819	15	85845457	85937309	17	0.489	SMALL-GAIN	FOCAL	1	AKAP13
TCGA.AA.3941	15	86046832	86657024	282	0.4611	SMALL-GAIN	FOCAL	2	"AKAP13,KLHL25"
TCGA.CK.5914.01A	15	86685189	88727394	43	0.5036	SMALL-GAIN	FOCAL	2	"AGBL1,NTRK3"
TCGA.AG.A01W.01A	15	87253981	87532380	7	0.6524	SMALL-GAIN	FOCAL	1	AGBL1
TCGA.AG.A01W.01A	15	87602875	87651662	28	0.5655	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	15	88470911	89078635	230	0.4319	SMALL-GAIN	FOCAL	4	"DET1,MRPL46,MRPS11,NTRK3"
TCGA.AG.A01W.01A	15	88610488	88821875	28	0.385	SMALL-GAIN	FOCAL	1	NTRK3
TCGA.AG.4009.01A	15	89731375	89790820	11	0.4156	SMALL-GAIN	FOCAL	3	"ABHD2,FANCI,RLBP1"
TCGA.AA.A00Q.01A	15	89762148	89866596	41	0.5266	SMALL-GAIN	FOCAL	3	"FANCI,POLG,RLBP1"
TCGA.AG.3891.01A	15	89835901	89859563	14	0.4897	SMALL-GAIN	FOCAL	2	"FANCI,POLG"
TCGA.AA.A00A.01A	15	89859563	90170159	35	0.4004	SMALL-GAIN	FOCAL	4	"FANCI,POLG,RHCG,TICRR"
TCGA.AG.A016.01A	15	90146019	90213220	28	0.3962	SMALL-GAIN	FOCAL	3	"KIF7,PLIN1,TICRR"
TCGA.AG.3891.01A	15	90185394	90210145	7	0.4638	SMALL-GAIN	FOCAL	2	"KIF7,PLIN1"
TCGA.AA.A00Q.01A	15	90272193	90446396	29	0.3874	SMALL-GAIN	FOCAL	7	"ANPEP,AP3S2,ARPIN,C15orf38-AP3S2,MESP1,MESP2,WDR93"
TCGA.AA.A00Q.01A	15	90630622	91333852	87	0.4364	SMALL-GAIN	FOCAL	9	"BLM,CIB1,CRTC3,GDPGP1,IDH2,IQGAP1,NGRN,SEMA4B,ZNF774"
TCGA.AA.A00N.01A	15	90969305	91030145	27	0.6501	SMALL-GAIN	FOCAL	1	IQGAP1
TCGA.CK.5914.01A	15	90969305	91035730	30	0.3996	SMALL-GAIN	FOCAL	1	IQGAP1
TCGA.AA.A010.01A	15	91145525	91333852	25	0.6326	SMALL-GAIN	FOCAL	2	"BLM,CRTC3"
TCGA.AA.A00N.01A	15	91290586	91337356	15	0.4481	SMALL-GAIN	FOCAL	1	BLM
TCGA.AA.A00A.01A	15	91496151	91769444	43	0.5948	SMALL-GAIN	FOCAL	5	"PRC1,RCCD1,SV2B,UNC45A,VPS33B"
TCGA.AA.3930.01A	15	91510305	91827214	45	0.4576	SMALL-GAIN	FOCAL	3	"PRC1,SV2B,VPS33B"
TCGA.AA.A00N.01A	15	91560133	93547795	70	0.5245	SMALL-GAIN	FOCAL	7	"C15orf32,CHD2,FAM174B,SLCO3A1,ST8SIA2,SV2B,VPS33B"
TCGA.AA.A010.01A	15	91810733	93016131	25	0.5674	SMALL-GAIN	FOCAL	4	"C15orf32,SLCO3A1,ST8SIA2,SV2B"
TCGA.AA.3941	15	92151160	92726701	277	0.4405	SMALL-GAIN	FOCAL	1	SLCO3A1
TCGA.AA.3941	15	92742886	92764427	7	0.4708	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	15	92772240	93245001	279	0.4151	SMALL-GAIN	FOCAL	3	"C15orf32,FAM174B,ST8SIA2"
TCGA.AA.3941	15	93460990	93498104	13	0.41	SMALL-GAIN	FOCAL	1	CHD2
TCGA.AA.A02H.01A	15	93496582	93536117	15	0.5281	SMALL-GAIN	FOCAL	1	CHD2
TCGA.AA.3941	15	93530414	94048685	321	0.5414	SMALL-GAIN	FOCAL	2	"CHD2,RGMA"
TCGA.AA.3941	15	94064633	94108536	22	0.5206	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	15	97326834	98504052	4	0.6461	SMALL-GAIN	FOCAL	2	"ARRDC4,SPATA8"
TCGA.AA.3941	15	98703327	100318843	614	0.511	SMALL-GAIN	FOCAL	8	"FAM169B,IGF1R,LRRC28,LYSMD4,MEF2A,PGPEP1L,SYNM,TTC23"
TCGA.AG.A01W.01A	15	98837082	99282312	26	0.6516	SMALL-GAIN	FOCAL	2	"FAM169B,IGF1R"
TCGA.AA.A00N.01A	15	99250750	100230408	54	0.4074	SMALL-GAIN	FOCAL	6	"IGF1R,LRRC28,MEF2A,PGPEP1L,SYNM,TTC23"
TCGA.AG.A01W.01A	15	99378733	99409410	12	0.6199	SMALL-GAIN	FOCAL	1	IGF1R
TCGA.AA.3941	15	100424604	101113861	351	0.5213	SMALL-GAIN	FOCAL	3	"ADAMTS17,CERS3,LINS"
TCGA.AG.4009.01A	15	100514575	100672190	10	0.4687	SMALL-GAIN	FOCAL	1	ADAMTS17
TCGA.AA.A00N.01A	15	100695338	101043829	19	0.4243	SMALL-GAIN	FOCAL	2	"ADAMTS17,CERS3"
TCGA.AA.3941	15	101136058	101188339	18	0.4286	SMALL-GAIN	FOCAL	2	"ASB7,LINS"
TCGA.AA.3941	15	101192250	102094077	407	0.6691	SMALL-GAIN	FOCAL	6	"ALDH1A3,CHSY1,LRRK1,PCSK6,SNRPA1,VIMP"
TCGA.AG.3906.01A	15	101425435	101464790	13	0.5694	SMALL-GAIN	FOCAL	2	"ALDH1A3,LRRK1"
TCGA.AA.A01Q.01A	15	101464790	101601328	8	0.5422	SMALL-GAIN	FOCAL	1	LRRK1
TCGA.AA.A010.01A	15	101513967	101718535	33	0.3834	SMALL-GAIN	FOCAL	2	"CHSY1,LRRK1"
TCGA.AG.A015.01A	15	101586186	101608829	13	0.4682	SMALL-GAIN	FOCAL	1	LRRK1
TCGA.AG.A00C.01A	15	101812928	101832110	10	0.5995	SMALL-GAIN	FOCAL	2	"SNRPA1,VIMP"
TCGA.AA.3941	15	102099024	102319741	62	0.4417	SMALL-GAIN	FOCAL	2	"TARSL2,TM2D3"
TCGA.AA.A00N.01A	15	102264267	102462347	4	0.4339	SMALL-GAIN	FOCAL	4	"OR4F15,OR4F4,OR4F6,TARSL2"
TCGA.AM.5820	16	94807	155319	19	0.5819	SMALL-GAIN	FOCAL	5	"MPG,NPRL3,POLR3K,RHBDF1,SNRNP25"
TCGA.AM.5820	16	309154	556800	50	0.651	SMALL-GAIN	FOCAL	10	"ARHGDIG,AXIN1,DECR2,ITFG3,MRPL28,NME4,PDIA2,RAB11FIP3,RGS11,TMEM8A"
TCGA.AG.4009.01A	16	339398	364494	5	0.4831	SMALL-GAIN	FOCAL	1	AXIN1
TCGA.AA.A01Q.01A	16	419961	461360	18	0.418	SMALL-GAIN	FOCAL	4	"DECR2,MRPL28,NME4,TMEM8A"
TCGA.AA.A01Q.01A	16	863275	1308010	13	0.5694	SMALL-GAIN	FOCAL	10	"C1QTNF8,CACNA1H,LMF1,PRR25,SOX8,SSTR5,TPSAB1,TPSB2,TPSD1,TPSG1"
TCGA.AM.5820	16	910949	1045720	27	0.4799	SMALL-GAIN	FOCAL	2	"LMF1,SOX8"
TCGA.AM.5820	16	1847867	1872458	12	0.3816	SMALL-GAIN	FOCAL	1	HAGH
TCGA.AG.4008	16	1858014	2011125	45	0.4293	SMALL-GAIN	FOCAL	7	"FAHD1,HAGH,HS3ST6,MEIOB,MSRB1,NDUFB10,RPL3L"
TCGA.AA.A02K.01A	16	1877255	2004532	27	0.4798	SMALL-GAIN	FOCAL	5	"FAHD1,HS3ST6,MEIOB,MSRB1,RPL3L"
TCGA.5M.AAT5	16	1890055	1946750	24	0.3809	SMALL-GAIN	FOCAL	2	"FAHD1,MEIOB"
TCGA.AG.A01W.01A	16	1965023	2034606	43	0.576	SMALL-GAIN	FOCAL	9	"GFER,HS3ST6,MSRB1,NDUFB10,NOXO1,RNF151,RPL3L,RPS2,TBL3"
TCGA.AA.A01Q.01A	16	2106124	2107056	3	0.6688	SMALL-GAIN	FOCAL	1	TSC2
TCGA.AA.A01Q.01A	16	2125780	2143881	18	0.5771	SMALL-GAIN	FOCAL	2	"PKD1,TSC2"
TCGA.AM.5820	16	2248016	2368168	19	0.4389	SMALL-GAIN	FOCAL	8	"ABCA3,BRICD5,DNASE1L2,E4F1,ECI1,MLST8,PGP,RNPS1"
TCGA.AA.A010.01A	16	2903042	2988146	14	0.4168	SMALL-GAIN	FOCAL	3	"FLYWCH1,FLYWCH2,PRSS22"
TCGA.AA.A02K.01A	16	3282375	3306272	12	0.628	SMALL-GAIN	FOCAL	2	"MEFV,ZNF200"
TCGA.F5.6863	16	3367032	3538002	62	0.5094	SMALL-GAIN	FOCAL	7	"MTRNR2L4,NAA60,OR2C1,ZNF174,ZNF597,ZNF75A,ZSCAN32"
TCGA.AA.A00L.01A	16	3632316	4057367	73	0.5054	SMALL-GAIN	FOCAL	5	"ADCY9,CREBBP,DNASE1,SLX4,TRAP1"
TCGA.AG.A01W.01A	16	3869776	4104772	13	0.5614	SMALL-GAIN	FOCAL	2	"ADCY9,CREBBP"
TCGA.AA.A01Q.01A	16	4382244	4415419	20	0.5856	SMALL-GAIN	FOCAL	4	"CORO7,CORO7-PAM16,GLIS2,PAM16"
TCGA.AA.A010.01A	16	4466390	4626048	32	0.4767	SMALL-GAIN	FOCAL	7	"C16orf96,CDIP1,CORO7,CORO7-PAM16,DNAJA3,HMOX2,NMRAL1"
TCGA.CK.5914.01A	16	4494616	4606481	20	0.4909	SMALL-GAIN	FOCAL	4	"CDIP1,DNAJA3,HMOX2,NMRAL1"
TCGA.AA.A01Z	16	4502409	4549225	20	0.4256	SMALL-GAIN	FOCAL	3	"DNAJA3,HMOX2,NMRAL1"
TCGA.AG.A01W.01A	16	4684934	4691386	6	0.656	SMALL-GAIN	FOCAL	1	MGRN1
TCGA.AG.A00C.01A	16	4774694	4910711	45	0.3912	SMALL-GAIN	FOCAL	8	"ANKS3,C16orf71,GLYR1,ROGDI,SEPT12,SMIM22,UBN1,ZNF500"
TCGA.T9.A92H	16	5145715	5941963	493	0.6034	SMALL-GAIN	FOCAL	1	EEF2KMT
TCGA.AA.3844	16	5361794	6161458	614	0.4042	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AA.3941	16	5361794	8596825	2533	0.4611	SMALL-GAIN	FOCAL	2	"RBFOX1,TMEM114"
TCGA.A6.2685	16	5691541	5746732	43	0.3854	SMALL-GAIN	FOCAL	0	None
TCGA.CK.6746	16	5810348	5853759	36	0.4517	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3560	16	5839962	6077369	177	0.4119	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AA.A01Z	16	5872969	5998976	98	0.4896	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01Z	16	6132597	6604181	387	0.4886	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AZ.6599	16	6264036	6427825	145	0.4114	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.F4.6460	16	6387347	6792418	366	0.6379	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AY.A71X	16	6413743	6623078	183	0.3889	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.CK.5912	16	6452535	6635973	151	0.4102	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.4N.A93T	16	6570963	6586271	23	0.4066	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	6576200	6773807	198	0.4239	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.F4.6460	16	6813670	9937979	2050	0.643	SMALL-GAIN	FOCAL	10	"ABAT,C16orf72,CARHSP1,GRIN2A,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.CM.4752	16	7133247	7146376	12	0.564	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AG.3883	16	7192633	7230345	38	0.4481	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.G4.6310	16	7209266	8411686	930	0.588	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.A6.6653	16	7212944	7340761	131	0.3909	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	7214559	7295166	86	0.4559	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AA.A01Z	16	7284551	7325577	45	0.452	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AA.A00N.01A	16	7382947	8891711	44	0.4183	SMALL-GAIN	FOCAL	6	"ABAT,METTL22,PMM2,RBFOX1,TMEM114,TMEM186"
TCGA.AA.A02Y	16	7731388	8293212	348	0.4725	SMALL-GAIN	FOCAL	1	RBFOX1
TCGA.AA.A01Z	16	7789261	8131939	198	0.5507	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	16	7802156	7834884	24	0.53075	SMALL-GAIN	FOCAL	0	None
TCGA.QL.A97D	16	8291931	8322011	28	0.4919	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	9284959	9542307	170	0.5928	SMALL-GAIN	FOCAL	0	None
TCGA.T9.A92H	16	9295341	10402510	759	0.6005	SMALL-GAIN	FOCAL	1	GRIN2A
TCGA.AA.3941	16	9605287	9845354	181	0.6059	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	9854202	10082865	108	0.4852	SMALL-GAIN	FOCAL	1	GRIN2A
TCGA.AA.3941	16	10099542	10281313	156	0.5071	SMALL-GAIN	FOCAL	1	GRIN2A
TCGA.AA.3866	16	10289196	11012733	316	0.5345	SMALL-GAIN	FOCAL	6	"ATF7IP2,CIITA,EMP2,NUBP1,TEKT5,TVP23A"
TCGA.AZ.6608	16	10409201	11024104	238	0.4744	SMALL-GAIN	FOCAL	7	"ATF7IP2,CIITA,DEXI,EMP2,NUBP1,TEKT5,TVP23A"
TCGA.CK.5914.01A	16	11945215	14704451	93	0.4784	SMALL-GAIN	FOCAL	9	"CPPED1,ERCC4,GSPT1,MKL2,PARN,RSL1D1,SHISA9,SNX29,TNFRSF17"
TCGA.AG.A00C.01A	16	11988726	12096773	8	0.4421	SMALL-GAIN	FOCAL	3	"GSPT1,SNX29,TNFRSF17"
TCGA.T9.A92H	16	12877537	12925434	26	0.562	SMALL-GAIN	FOCAL	1	CPPED1
TCGA.AA.3941	16	13012106	14331024	627	0.47	SMALL-GAIN	FOCAL	3	"ERCC4,MKL2,SHISA9"
TCGA.AA.3982	16	14054079	14173902	41	0.5578	SMALL-GAIN	FOCAL	1	MKL2
TCGA.CK.5914.01A	16	14723882	14956823	19	0.4144	SMALL-GAIN	FOCAL	6	"BFAR,NOMO1,NPIPA2,NPIPA3,PARN,PLA2G10"
TCGA.AA.3930.01A	16	14932255	15120451	38	0.4983	SMALL-GAIN	FOCAL	3	"NOMO1,NPIPA1,PDXDC1"
TCGA.AG.A016.01A	16	15092178	15164948	32	0.5176	SMALL-GAIN	FOCAL	3	"NTAN1,PDXDC1,RRN3"
TCGA.AG.3909.01A	16	15179962	15719247	30	0.6691	SMALL-GAIN	FOCAL	6	"C16orf45,KIAA0430,MPV17L,NPIPA5,PDXDC1,RRN3"
TCGA.AA.3862.01A	16	15528459	15784953	38	0.5892	SMALL-GAIN	FOCAL	3	"C16orf45,KIAA0430,NDE1"
TCGA.CK.5914.01A	16	15528459	16110346	87	0.4837	SMALL-GAIN	FOCAL	6	"ABCC1,C16orf45,FOPNL,KIAA0430,MYH11,NDE1"
TCGA.AG.4009.01A	16	15675027	15692659	5	0.478	SMALL-GAIN	FOCAL	2	"C16orf45,KIAA0430"
TCGA.AG.A016.01A	16	15690499	15829201	46	0.4885	SMALL-GAIN	FOCAL	3	"KIAA0430,MYH11,NDE1"
TCGA.AG.3909.01A	16	15737101	15761096	3	0.4934	SMALL-GAIN	FOCAL	1	NDE1
TCGA.AA.A010.01A	16	15771609	15802606	7	0.4022	SMALL-GAIN	FOCAL	2	"MYH11,NDE1"
TCGA.AA.A00Q.01A	16	15814668	17352856	74	0.4583	SMALL-GAIN	FOCAL	9	"ABCC1,ABCC6,FOPNL,MYH11,NDE1,NOMO3,NPIPA7,NPIPA8,XYLT1"
TCGA.AA.A010.01A	16	15853401	15917085	11	0.5803	SMALL-GAIN	FOCAL	1	MYH11
TCGA.AA.A00A.01A	16	15854360	15977855	14	0.5919	SMALL-GAIN	FOCAL	2	"FOPNL,MYH11"
TCGA.AG.A016.01A	16	15857614	16248455	47	0.4017	SMALL-GAIN	FOCAL	4	"ABCC1,ABCC6,FOPNL,MYH11"
TCGA.AA.A00N.01A	16	15982342	16110346	5	0.4577	SMALL-GAIN	FOCAL	2	"ABCC1,FOPNL"
TCGA.AA.A01Q.01A	16	15982342	17352856	47	0.5793	SMALL-GAIN	FOCAL	7	"ABCC1,ABCC6,FOPNL,NOMO3,NPIPA7,NPIPA8,XYLT1"
TCGA.CK.5914.01A	16	16196442	16267104	22	0.649	SMALL-GAIN	FOCAL	2	"ABCC1,ABCC6"
TCGA.AA.3941	16	16633571	17122767	85	0.4907	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	17132097	18910038	433	0.58	SMALL-GAIN	FOCAL	7	"ARL6IP1,NOMO2,NPIPA7,NPIPA8,RPS15A,SMG1,XYLT1"
TCGA.AA.3861.01A	16	17202565	18869469	58	0.4448	SMALL-GAIN	FOCAL	7	"ARL6IP1,NOMO2,NPIPA7,NPIPA8,RPS15A,SMG1,XYLT1"
TCGA.AA.3862.01A	16	17202565	18869469	58	0.4975	SMALL-GAIN	FOCAL	7	"ARL6IP1,NOMO2,NPIPA7,NPIPA8,RPS15A,SMG1,XYLT1"
TCGA.AA.A010.01A	16	17202565	19089353	97	0.4713	SMALL-GAIN	FOCAL	9	"ARL6IP1,COQ7,NOMO2,NPIPA7,NPIPA8,RPS15A,SMG1,TMC7,XYLT1"
TCGA.AA.A00A.01A	16	17451787	18809985	23	0.6342	SMALL-GAIN	FOCAL	6	"ARL6IP1,NOMO2,NPIPA7,NPIPA8,RPS15A,XYLT1"
TCGA.AG.A01W.01A	16	18720171	18756050	17	0.4845	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	18766227	18773449	7	0.4208	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	16	18812669	19078925	59	0.4953	SMALL-GAIN	FOCAL	4	"ARL6IP1,COQ7,SMG1,TMC7"
TCGA.AA.A00N.01A	16	18869469	18893450	9	0.63	SMALL-GAIN	FOCAL	1	SMG1
TCGA.AA.A00D.01A	16	19020457	19070676	14	0.4638	SMALL-GAIN	FOCAL	1	TMC7
TCGA.AG.A00C.01A	16	19070676	19184705	11	0.5482	SMALL-GAIN	FOCAL	4	"COQ7,ITPRIPL2,SYT17,TMC7"
TCGA.CK.4948.01B	16	19194822	19455365	11	0.519	SMALL-GAIN	FOCAL	3	"CLEC19A,SYT17,TMC5"
TCGA.CK.5914.01A	16	19467981	19532979	24	0.4797	SMALL-GAIN	FOCAL	2	"GDE1,TMC5"
TCGA.AA.A00N.01A	16	19566959	19710775	30	0.4448	SMALL-GAIN	FOCAL	1	C16orf62
TCGA.AA.A00D.01A	16	19603107	20386093	65	0.4127	SMALL-GAIN	FOCAL	8	"C16orf62,GP2,GPR139,GPRC5B,IQCK,KNOP1,PDILT,UMOD"
TCGA.CK.4948.01B	16	19883490	20337607	14	0.5309	SMALL-GAIN	FOCAL	3	"GP2,GPR139,GPRC5B"
TCGA.AA.A00N.01A	16	20043006	20347932	16	0.5383	SMALL-GAIN	FOCAL	3	"GP2,GPR139,UMOD"
TCGA.AA.3941	16	20155528	20733648	183	0.3893	SMALL-GAIN	FOCAL	7	"ACSM1,ACSM2A,ACSM2B,ACSM5,GP2,PDILT,UMOD"
TCGA.CK.5914.01A	16	20346733	20395960	18	0.4953	SMALL-GAIN	FOCAL	2	"PDILT,UMOD"
TCGA.CK.5914.01A	16	20480786	20557658	15	0.4734	SMALL-GAIN	FOCAL	2	"ACSM2A,ACSM2B"
TCGA.AG.3909.01A	16	20781320	20803292	11	0.5796	SMALL-GAIN	FOCAL	2	"ACSM3,ERI2"
TCGA.AG.A01W.01A	16	20901498	20916055	5	0.53	SMALL-GAIN	FOCAL	2	"DCUN1D3,LYRM1"
TCGA.AG.A00C.01A	16	20990603	20999018	5	0.5865	SMALL-GAIN	FOCAL	1	DNAH3
TCGA.CK.5914.01A	16	21030948	21281059	64	0.6594	SMALL-GAIN	FOCAL	5	"ANKS4B,CRYM,DNAH3,TMEM159,ZP2"
TCGA.AG.3909.01A	16	21145528	21185323	10	0.451	SMALL-GAIN	FOCAL	2	"DNAH3,TMEM159"
TCGA.AA.A00N.01A	16	21190735	21289364	23	0.4413	SMALL-GAIN	FOCAL	4	"ANKS4B,CRYM,TMEM159,ZP2"
TCGA.AG.A00C.01A	16	21281059	21666501	19	0.5293	SMALL-GAIN	FOCAL	4	"CRYM,IGSF6,METTL9,NPIPB3"
TCGA.DY.A1DG	16	21347618	22030911	42	0.412	SMALL-GAIN	FOCAL	7	"C16orf52,IGSF6,METTL9,NPIPB3,OTOA,PDZD9,UQCRC2"
TCGA.AA.A00N.01A	16	21693001	22237019	71	0.4883	SMALL-GAIN	FOCAL	6	"C16orf52,EEF2K,OTOA,PDZD9,UQCRC2,VWA3A"
TCGA.AA.A00N.01A	16	22385490	23403660	43	0.4622	SMALL-GAIN	FOCAL	7	"CDR2,COG7,HS3ST2,NPIPB5,SCNN1B,SCNN1G,USP31"
TCGA.AG.3909.01A	16	23379157	23387007	4	0.4054	SMALL-GAIN	FOCAL	1	SCNN1B
TCGA.AA.A00D.01A	16	23497975	23693332	31	0.6565	SMALL-GAIN	FOCAL	7	"DCTN5,EARS2,GGA2,NDUFAB1,PALB2,PLK1,UBFD1"
TCGA.AG.A00C.01A	16	23721433	23768780	7	0.551	SMALL-GAIN	FOCAL	2	"CHP2,ERN2"
TCGA.AG.A00C.01A	16	24560255	24761994	15	0.6182	SMALL-GAIN	FOCAL	2	"RBBP6,TNRC6A"
TCGA.AG.3909.01A	16	24953270	24963562	5	0.5864	SMALL-GAIN	FOCAL	1	ARHGAP17
TCGA.AG.3909.01A	16	25139743	25162808	4	0.5739	SMALL-GAIN	FOCAL	1	LCMT1
TCGA.AG.A00C.01A	16	25251086	25268013	7	0.5346	SMALL-GAIN	FOCAL	1	ZKSCAN2
TCGA.AG.3909.01A	16	25251086	27246461	21	0.484	SMALL-GAIN	FOCAL	5	"C16orf82,HS3ST4,KDM8,NSMCE1,ZKSCAN2"
TCGA.AA.3941	16	25620009	26252501	280	0.395	SMALL-GAIN	FOCAL	1	HS3ST4
TCGA.AA.3941	16	26269639	26563362	133	0.3997	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	26569558	27075929	266	0.5374	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	16	28507110	28518037	7	0.4738	SMALL-GAIN	FOCAL	2	"APOBR,IL27"
TCGA.AA.A010.01A	16	28592328	28634384	15	0.432	SMALL-GAIN	FOCAL	3	"CCDC101,SULT1A1,SULT1A2"
TCGA.AA.A00D.01A	16	28846397	28992761	49	0.3868	SMALL-GAIN	FOCAL	8	"ATP2A1,ATXN2L,CD19,NFATC2IP,RABEP2,SH2B1,SPNS1,TUFM"
TCGA.AA.A00L.01A	16	29827809	29842148	5	0.5075	SMALL-GAIN	FOCAL	2	"MVP,PAGR1"
TCGA.AA.A00N.01A	16	29841823	29859101	12	0.4646	SMALL-GAIN	FOCAL	1	MVP
TCGA.AG.3906.01A	16	30408609	30535821	29	0.5129	SMALL-GAIN	FOCAL	6	"DCTPP1,ITGAL,SEPHS2,ZNF48,ZNF768,ZNF771"
TCGA.AA.A010.01A	16	30441152	30507379	13	0.4248	SMALL-GAIN	FOCAL	3	"DCTPP1,ITGAL,SEPHS2"
TCGA.AA.A00L.01A	16	30486597	30525049	16	0.6632	SMALL-GAIN	FOCAL	1	ITGAL
TCGA.AA.A01Q.01A	16	30731987	30740280	9	0.466	SMALL-GAIN	FOCAL	1	SRCAP
TCGA.AA.A00N.01A	16	30731987	30740644	10	0.5071	SMALL-GAIN	FOCAL	1	SRCAP
TCGA.CK.5914.01A	16	30731987	30740644	10	0.56	SMALL-GAIN	FOCAL	1	SRCAP
TCGA.AG.3906.01A	16	30785207	30795157	4	0.4367	SMALL-GAIN	FOCAL	2	"RNF40,ZNF629"
TCGA.AG.A01W.01A	16	30897918	30906561	9	0.6215	SMALL-GAIN	FOCAL	1	BCL7C
TCGA.AG.3906.01A	16	31045070	31102408	19	0.4006	SMALL-GAIN	FOCAL	5	"PRSS53,STX4,VKORC1,ZNF646,ZNF668"
TCGA.AG.3906.01A	16	31138315	31193630	17	0.4161	SMALL-GAIN	FOCAL	4	"FUS,KAT8,PRSS36,PRSS8"
TCGA.AA.A010.01A	16	31271298	31414769	47	0.4954	SMALL-GAIN	FOCAL	3	"ITGAD,ITGAM,ITGAX"
TCGA.AA.A01Q.01A	16	31277088	31341628	8	0.6691	SMALL-GAIN	FOCAL	1	ITGAM
TCGA.AG.3909.01A	16	31332514	31366514	13	0.436	SMALL-GAIN	FOCAL	2	"ITGAM,ITGAX"
TCGA.AG.3909.01A	16	31390828	31447675	25	0.4191	SMALL-GAIN	FOCAL	4	"COX6A2,ITGAD,ITGAX,ZNF843"
TCGA.AA.A00N.01A	16	31404596	31424107	11	0.5817	SMALL-GAIN	FOCAL	1	ITGAD
TCGA.AG.3906.01A	16	31421665	31487285	21	0.5851	SMALL-GAIN	FOCAL	5	"ARMC5,COX6A2,ITGAD,TGFB1I1,ZNF843"
TCGA.CK.5914.01A	16	31724654	46642154	20	0.4525	SMALL-GAIN	FOCAL	7	"SHCBP1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,ZNF267,ZNF720"
TCGA.AG.A01W.01A	16	33872952	45195399	8	0.5466	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3726	16	46610186	47595004	85	0.589	SMALL-GAIN	FOCAL	10	"C16orf87,DNAJA2,GPT2,ITFG1,MYLK3,NETO2,ORC6,PHKB,SHCBP1,VPS35"
TCGA.AG.A00C.01A	16	46637859	46744502	30	0.5308	SMALL-GAIN	FOCAL	4	"MYLK3,ORC6,SHCBP1,VPS35"
TCGA.AG.3909.01A	16	46741545	47733099	92	0.4779	SMALL-GAIN	FOCAL	7	"C16orf87,DNAJA2,GPT2,ITFG1,MYLK3,NETO2,PHKB"
TCGA.AG.3906.01A	16	46943568	47005736	14	0.6141	SMALL-GAIN	FOCAL	2	"DNAJA2,GPT2"
TCGA.AG.3906.01A	16	47162218	47196402	7	0.6041	SMALL-GAIN	FOCAL	2	"ITFG1,NETO2"
TCGA.AA.A00D.01A	16	47252739	48119466	45	0.4335	SMALL-GAIN	FOCAL	3	"ABCC12,ITFG1,PHKB"
TCGA.AA.A00N.01A	16	47531293	48174561	53	0.506	SMALL-GAIN	FOCAL	2	"ABCC12,PHKB"
TCGA.AG.3726	16	48093744	48666499	100	0.6124	SMALL-GAIN	FOCAL	5	"ABCC11,ABCC12,LONP2,N4BP1,SIAH1"
TCGA.AG.3909.01A	16	48249076	48264298	6	0.6496	SMALL-GAIN	FOCAL	1	ABCC11
TCGA.AA.A00D.01A	16	48286033	48396222	16	0.6551	SMALL-GAIN	FOCAL	2	"LONP2,SIAH1"
TCGA.AG.3909.01A	16	48303880	48385475	9	0.6033	SMALL-GAIN	FOCAL	1	LONP2
TCGA.AA.3812	16	48571589	49295606	258	0.5713	SMALL-GAIN	FOCAL	1	N4BP1
TCGA.D5.6539	16	48590587	49998916	533	0.5856	SMALL-GAIN	FOCAL	4	"C16orf78,CBLN1,N4BP1,ZNF423"
TCGA.CK.5914.01A	16	50136121	50642138	56	0.6687	SMALL-GAIN	FOCAL	5	"ADCY7,BRD7,HEATR3,NKD1,PAPD5"
TCGA.AA.A00N.01A	16	50322051	50344547	18	0.4808	SMALL-GAIN	FOCAL	1	ADCY7
TCGA.AA.A00Q.01A	16	50348877	50401969	18	0.6091	SMALL-GAIN	FOCAL	2	"ADCY7,BRD7"
TCGA.AA.A010.01A	16	50642138	50667082	7	0.6588	SMALL-GAIN	FOCAL	1	NKD1
TCGA.AA.A00N.01A	16	50811684	50830206	12	0.5519	SMALL-GAIN	FOCAL	1	CYLD
TCGA.A6.2678	16	51451481	51533834	31	0.5017	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A026	16	51760230	51818921	30	0.4368	SMALL-GAIN	FOCAL	0	None
TCGA.EI.6883	16	52310526	52923037	244	0.3797	SMALL-GAIN	FOCAL	1	TOX3
TCGA.CM.6170	16	52312631	55378504	1186	0.5674	SMALL-GAIN	FOCAL	10	"AKTIP,CHD9,FTO,IRX3,IRX5,IRX6,LOC643802,RBL2,RPGRIP1L,TOX3"
TCGA.T9.A92H	16	53438797	53681429	63	0.6597	SMALL-GAIN	FOCAL	3	"AKTIP,RBL2,RPGRIP1L"
TCGA.AG.3726	16	53604176	54436929	337	0.4367	SMALL-GAIN	FOCAL	3	"FTO,IRX3,RPGRIP1L"
TCGA.AG.A01W.01A	16	54116885	54263325	17	0.3801	SMALL-GAIN	FOCAL	1	FTO
TCGA.AA.A00Q.01A	16	55364117	55616809	29	0.5429	SMALL-GAIN	FOCAL	4	"CAPNS2,IRX6,LPCAT2,MMP2"
TCGA.AG.A01W.01A	16	55560751	55564695	6	0.561	SMALL-GAIN	FOCAL	1	LPCAT2
TCGA.AG.A01W.01A	16	55661893	55670925	7	0.4002	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00Q.01A	16	55735723	56309791	28	0.6412	SMALL-GAIN	FOCAL	4	"CES1,CES5A,GNAO1,SLC6A2"
TCGA.AA.A00L.01A	16	55840206	56601595	83	0.5174	SMALL-GAIN	FOCAL	8	"AMFR,BBS2,CES1,CES5A,GNAO1,MT4,NUDT21,OGFOD1"
TCGA.AG.A01W.01A	16	56047876	56161785	34	0.3841	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	56342190	56352778	16	0.4651	SMALL-GAIN	FOCAL	1	GNAO1
TCGA.AG.A00C.01A	16	56448119	56480472	6	0.4771	SMALL-GAIN	FOCAL	2	"AMFR,NUDT21"
TCGA.AA.A00D.01A	16	56468617	56548315	33	0.5091	SMALL-GAIN	FOCAL	3	"BBS2,NUDT21,OGFOD1"
TCGA.CK.5914.01A	16	56500022	56623432	29	0.6537	SMALL-GAIN	FOCAL	4	"BBS2,MT3,MT4,OGFOD1"
TCGA.AG.3909.01A	16	56530832	56624701	19	0.3825	SMALL-GAIN	FOCAL	3	"BBS2,MT3,MT4"
TCGA.EI.6883	16	56765685	56840327	14	0.5145	SMALL-GAIN	FOCAL	1	NUP93
TCGA.AA.A00A.01A	16	56792402	57016022	65	0.4065	SMALL-GAIN	FOCAL	4	"CETP,HERPUD1,NUP93,SLC12A3"
TCGA.AG.3611.01A	16	56916261	56921787	6	0.6269	SMALL-GAIN	FOCAL	1	SLC12A3
TCGA.AG.3909.01A	16	57011953	57054654	6	0.527	SMALL-GAIN	FOCAL	2	"CETP,NLRC5"
TCGA.AA.A00N.01A	16	57101606	57188173	28	0.5718	SMALL-GAIN	FOCAL	3	"CPNE2,FAM192A,NLRC5"
TCGA.AG.A00C.01A	16	57206116	57286031	22	0.4153	SMALL-GAIN	FOCAL	3	"ARL2BP,FAM192A,RSPRY1"
TCGA.AA.A00K.01A	16	57241896	57292333	20	0.6247	SMALL-GAIN	FOCAL	3	"ARL2BP,PLLP,RSPRY1"
TCGA.AA.A010.01A	16	57279212	57486694	29	0.5728	SMALL-GAIN	FOCAL	7	"ARL2BP,CCL17,CCL22,CIAPIN1,COQ9,CX3CL1,PLLP"
TCGA.AG.4009.01A	16	57392665	57449628	9	0.4929	SMALL-GAIN	FOCAL	3	"CCL17,CCL22,CX3CL1"
TCGA.A6.2686	16	57407645	57720487	100	0.3902	SMALL-GAIN	FOCAL	10	"ADGRG1,ADGRG3,ADGRG5,CCDC102A,CCL17,CIAPIN1,COQ9,CX3CL1,DOK4,POLR2C"
TCGA.AG.A00C.01A	16	57466349	57554928	31	0.4146	SMALL-GAIN	FOCAL	5	"CCDC102A,CIAPIN1,COQ9,DOK4,POLR2C"
TCGA.AA.A01Q.01A	16	57595956	57625461	12	0.4497	SMALL-GAIN	FOCAL	1	ADGRG5
TCGA.AA.A00N.01A	16	57596976	57741320	40	0.5557	SMALL-GAIN	FOCAL	4	"ADGRG1,ADGRG3,ADGRG5,DRC7"
TCGA.AA.A010.01A	16	57601780	58000980	104	0.4756	SMALL-GAIN	FOCAL	8	"ADGRG1,ADGRG3,ADGRG5,CNGB1,DRC7,KATNB1,KIFC3,LOC388282"
TCGA.AG.3909.01A	16	57608689	57714130	21	0.5724	SMALL-GAIN	FOCAL	3	"ADGRG1,ADGRG3,ADGRG5"
TCGA.AG.4009.01A	16	57685115	57710065	14	0.4375	SMALL-GAIN	FOCAL	2	"ADGRG1,ADGRG3"
TCGA.AA.3979	16	57715754	57948542	84	0.6205	SMALL-GAIN	FOCAL	6	"ADGRG3,CNGB1,DRC7,KATNB1,KIFC3,LOC388282"
TCGA.AA.A01Q.01A	16	57731810	57764805	15	0.5003	SMALL-GAIN	FOCAL	1	DRC7
TCGA.AY.A71X	16	57786365	57821326	16	0.4394	SMALL-GAIN	FOCAL	2	"KATNB1,KIFC3"
TCGA.AG.3909.01A	16	57800748	57935221	10	0.5851	SMALL-GAIN	FOCAL	3	"CNGB1,KIFC3,LOC388282"
TCGA.AA.A00Q.01A	16	58036366	58551892	59	0.5671	SMALL-GAIN	FOCAL	9	"CCDC113,CFAP20,CSNK2A2,GINS3,MMP15,NDRG4,PRSS54,SETD6,USB1"
TCGA.AA.A010.01A	16	58078873	58162881	7	0.5886	SMALL-GAIN	FOCAL	2	"CFAP20,MMP15"
TCGA.AA.A00A.01A	16	58147845	58313582	25	0.6698	SMALL-GAIN	FOCAL	3	"CCDC113,CFAP20,CSNK2A2"
TCGA.AA.A00L.01A	16	58314090	58528791	10	0.4314	SMALL-GAIN	FOCAL	4	"CCDC113,GINS3,NDRG4,PRSS54"
TCGA.AG.3891.01A	16	58550117	58559875	9	0.658	SMALL-GAIN	FOCAL	2	"CNOT1,SETD6"
TCGA.AG.3906.01A	16	58562370	58575358	9	0.4047	SMALL-GAIN	FOCAL	1	CNOT1
TCGA.AA.A00N.01A	16	58585456	58742026	31	0.6361	SMALL-GAIN	FOCAL	3	"CNOT1,GOT2,SLC38A7"
TCGA.A6.3808.01A	16	58633098	66575723	65	0.4663	SMALL-GAIN	FOCAL	9	"BEAN1,CDH11,CDH5,CDH8,CNOT1,GOT2,LOC729159,SLC38A7,TK2"
TCGA.AG.4009.01A	16	58701262	58713759	10	0.4752	SMALL-GAIN	FOCAL	1	SLC38A7
TCGA.CK.5914.01A	16	58701262	65038508	43	0.517	SMALL-GAIN	FOCAL	5	"CDH11,CDH8,GOT2,LOC729159,SLC38A7"
TCGA.AA.3941	16	58881268	59054457	65	0.4079	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	65504387	66155080	349	0.4626	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	16	65719330	66104841	244	0.3924	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	65862121	66208111	71	0.4103	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	16	66436536	66570823	8	0.6238	SMALL-GAIN	FOCAL	3	"BEAN1,CDH5,TK2"
TCGA.AG.A00C.01A	16	66565231	66670260	23	0.5539	SMALL-GAIN	FOCAL	7	"CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,TK2"
TCGA.AG.3906.01A	16	66620848	66783062	21	0.6557	SMALL-GAIN	FOCAL	4	"CMTM2,CMTM3,CMTM4,DYNC1LI2"
TCGA.AG.A011.01A	16	66670260	66919391	37	0.4322	SMALL-GAIN	FOCAL	6	"CA7,CCDC79,CMTM4,DYNC1LI2,NAE1,PDP2"
TCGA.CK.5914.01A	16	66757585	66785115	12	0.469	SMALL-GAIN	FOCAL	1	DYNC1LI2
TCGA.AG.3909.01A	16	66757585	66824451	15	0.5711	SMALL-GAIN	FOCAL	2	"CCDC79,DYNC1LI2"
TCGA.AG.A00C.01A	16	66836861	66919391	24	0.6299	SMALL-GAIN	FOCAL	3	"CA7,NAE1,PDP2"
TCGA.AA.A00L.01A	16	67242178	67281092	13	0.5914	SMALL-GAIN	FOCAL	3	"FHOD1,LRRC29,TMEM208"
TCGA.AA.A01Q.01A	16	67325542	67410582	14	0.3811	SMALL-GAIN	FOCAL	2	"KCTD19,LRRC36"
TCGA.AG.A016.01A	16	67335667	67671551	56	0.4896	SMALL-GAIN	FOCAL	9	"AGRP,ATP6V0D1,CTCF,FAM65A,HSD11B2,KCTD19,LRRC36,TPPP3,ZDHHC1"
TCGA.AA.A00L.01A	16	67375808	67415995	12	0.6302	SMALL-GAIN	FOCAL	1	LRRC36
TCGA.AG.3891.01A	16	67644696	67681009	14	0.6535	SMALL-GAIN	FOCAL	2	"CTCF,RLTPR"
TCGA.AG.3891.01A	16	67693614	67701730	6	0.6016	SMALL-GAIN	FOCAL	4	"ACD,C16orf86,ENKD1,PARD6A"
TCGA.AA.A00N.01A	16	67942601	67984195	21	0.3983	SMALL-GAIN	FOCAL	5	"CTRL,LCAT,PSKH1,PSMB10,SLC12A4"
TCGA.AG.A01W.01A	16	67975948	68286529	22	0.4487	SMALL-GAIN	FOCAL	10	"DDX28,DPEP2,DPEP3,DUS2,ESRP2,LCAT,LOC100131303,NFATC3,PLA2G15,SLC12A4"
TCGA.AG.3906.01A	16	68283142	68331103	12	0.6122	SMALL-GAIN	FOCAL	2	"PLA2G15,SLC7A6"
TCGA.AA.A00N.01A	16	68344196	68381059	11	0.4882	SMALL-GAIN	FOCAL	2	"PRMT7,SLC7A6OS"
TCGA.AG.3909.01A	16	68344196	68597899	25	0.4386	SMALL-GAIN	FOCAL	4	"PRMT7,SLC7A6OS,SMPD3,ZFP90"
TCGA.AA.A010.01A	16	68344196	69074160	76	0.6732	SMALL-GAIN	FOCAL	7	"CDH1,CDH3,PRMT7,SLC7A6OS,SMPD3,TANGO6,ZFP90"
TCGA.CK.5914.01A	16	68358536	69117337	75	0.429	SMALL-GAIN	FOCAL	6	"CDH1,CDH3,PRMT7,SMPD3,TANGO6,ZFP90"
TCGA.AM.5820	16	68372322	68474820	29	0.4741	SMALL-GAIN	FOCAL	2	"PRMT7,SMPD3"
TCGA.AG.A01W.01A	16	68844109	68859628	13	0.5594	SMALL-GAIN	FOCAL	1	CDH1
TCGA.AG.A01W.01A	16	69059234	69075211	19	0.547	SMALL-GAIN	FOCAL	1	TANGO6
TCGA.AG.3909.01A	16	69184398	69303996	13	0.5962	SMALL-GAIN	FOCAL	2	"CIRH1A,SNTB2"
TCGA.AG.A00C.01A	16	69317933	69419263	30	0.5824	SMALL-GAIN	FOCAL	7	"COG8,NIP7,PDF,SNTB2,TERF2,TMED6,VPS4A"
TCGA.AG.3909.01A	16	69391342	69746909	29	0.5328	SMALL-GAIN	FOCAL	4	"CYB5B,NFAT5,NQO1,TERF2"
TCGA.AA.A00N.01A	16	69419263	69951582	41	0.4454	SMALL-GAIN	FOCAL	6	"CYB5B,NFAT5,NOB1,NQO1,TERF2,WWP2"
TCGA.CK.5914.01A	16	69744859	69951582	21	0.5041	SMALL-GAIN	FOCAL	3	"NOB1,NQO1,WWP2"
TCGA.AM.5820	16	69952656	69976478	10	0.6292	SMALL-GAIN	FOCAL	1	WWP2
TCGA.AG.3909.01A	16	69959273	69963981	3	0.4558	SMALL-GAIN	FOCAL	1	WWP2
TCGA.AG.A015.01A	16	69967834	70302126	39	0.5726	SMALL-GAIN	FOCAL	6	"AARS,CLEC18A,CLEC18C,EXOSC6,PDPR,WWP2"
TCGA.AG.A01W.01A	16	70039510	70241148	25	0.4457	SMALL-GAIN	FOCAL	2	"CLEC18C,PDPR"
TCGA.AG.3891.01A	16	70286572	70405236	42	0.5835	SMALL-GAIN	FOCAL	3	"AARS,DDX19A,DDX19B"
TCGA.AA.A00L.01A	16	70291904	70316485	14	0.4318	SMALL-GAIN	FOCAL	1	AARS
TCGA.AA.A01F.01A	16	70432098	70524173	7	0.4821	SMALL-GAIN	FOCAL	3	"COG4,FUK,ST3GAL2"
TCGA.AA.A00N.01A	16	70543087	70680766	32	0.6387	SMALL-GAIN	FOCAL	3	"COG4,IL34,SF3B3"
TCGA.A6.3808.01A	16	70569164	70699309	29	0.5836	SMALL-GAIN	FOCAL	3	"IL34,MTSS1L,SF3B3"
TCGA.AM.5820	16	70683177	70804909	36	0.5911	SMALL-GAIN	FOCAL	3	"IL34,MTSS1L,VAC14"
TCGA.AA.A017.01A	16	70690457	71220612	94	0.4446	SMALL-GAIN	FOCAL	4	"HYDIN,IL34,MTSS1L,VAC14"
TCGA.AA.A01F.01A	16	70713481	70732503	6	0.5982	SMALL-GAIN	FOCAL	2	"MTSS1L,VAC14"
TCGA.AA.A00N.01A	16	70778278	70820086	12	0.4319	SMALL-GAIN	FOCAL	1	VAC14
TCGA.CK.5914.01A	16	70778278	70843639	15	0.5361	SMALL-GAIN	FOCAL	2	"HYDIN,VAC14"
TCGA.AG.3909.01A	16	70816889	70843639	9	0.4883	SMALL-GAIN	FOCAL	2	"HYDIN,VAC14"
TCGA.A6.6652	16	70842096	71200048	96	0.4362	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.CM.5861	16	70842096	71200048	95	0.5343	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.F5.6464	16	70842096	71202488	97	0.4738	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.AA.3675	16	70846070	71200048	96	0.431	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.DM.A28C	16	70846070	71200048	95	0.6483	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.AA.3973	16	70850892	71093624	77	0.5251	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.AA.3941	16	70886408	71113485	72	0.4619	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.CA.5254	16	70901157	71238369	81	0.5529	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.CK.5914.01A	16	70923442	70972470	13	0.4697	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.AG.A026	16	70963727	71207878	59	0.3909	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.A6.6653	16	71067138	71230078	26	0.4594	SMALL-GAIN	FOCAL	1	HYDIN
TCGA.AG.3909.01A	16	71171077	71408611	11	0.5735	SMALL-GAIN	FOCAL	3	"CALB2,CMTR2,HYDIN"
TCGA.AA.3941	16	71188798	71408939	76	0.419	SMALL-GAIN	FOCAL	3	"CALB2,CMTR2,HYDIN"
TCGA.AA.3982	16	71372482	71506982	51	0.5439	SMALL-GAIN	FOCAL	2	"CALB2,ZNF23"
TCGA.AG.3909.01A	16	71570594	72050868	77	0.5534	SMALL-GAIN	FOCAL	10	"AP1G1,ATXN1L,CHST4,DHODH,IST1,MARVELD3,PHLPP2,PKD1L3,TAT,ZNF821"
TCGA.A6.6780	16	71603911	72027610	84	0.5021	SMALL-GAIN	FOCAL	8	"AP1G1,ATXN1L,IST1,MARVELD3,PHLPP2,PKD1L3,TAT,ZNF821"
TCGA.AA.3941	16	72048079	72887825	161	0.4239	SMALL-GAIN	FOCAL	7	"DHODH,DHX38,HP,HPR,PMFBP1,TXNL4B,ZFHX3"
TCGA.CK.5914.01A	16	72120496	72134938	11	0.5297	SMALL-GAIN	FOCAL	2	"DHX38,TXNL4B"
TCGA.AA.A00L.01A	16	72137827	72164142	21	0.4495	SMALL-GAIN	FOCAL	2	"DHX38,PMFBP1"
TCGA.AG.3909.01A	16	72821036	74330752	15	0.5349	SMALL-GAIN	FOCAL	3	"C16orf47,PSMD7,ZFHX3"
TCGA.AA.3850	16	72893696	73227727	106	0.42475	SMALL-GAIN	FOCAL	2	"C16orf47,ZFHX3"
TCGA.AA.3941	16	72893696	73705779	340	0.6277	SMALL-GAIN	FOCAL	2	"C16orf47,ZFHX3"
TCGA.AA.3844	16	72931084	73227727	91	0.5429	SMALL-GAIN	FOCAL	2	"C16orf47,ZFHX3"
TCGA.AA.3850	16	73277588	73330762	22	0.39245	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3850	16	73379821	73418429	29	0.58945	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	73485038	73507252	6	0.6458	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3870	16	73598081	73657932	28	0.4501	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	73718133	74219988	218	0.4926	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	16	74451915	74990336	78	0.6462	SMALL-GAIN	FOCAL	6	"CLEC18B,FA2H,GLG1,MLKL,RFWD3,WDR59"
TCGA.AG.A00C.01A	16	74682994	74709520	7	0.4198	SMALL-GAIN	FOCAL	2	"MLKL,RFWD3"
TCGA.AA.A00N.01A	16	74729195	75140362	37	0.5472	SMALL-GAIN	FOCAL	4	"FA2H,MLKL,WDR59,ZNRF1"
TCGA.AA.A010.01A	16	75127429	75263358	24	0.3884	SMALL-GAIN	FOCAL	6	"BCAR1,CTRB1,CTRB2,LDHD,ZFP1,ZNRF1"
TCGA.AG.3909.01A	16	75327818	75467120	7	0.6685	SMALL-GAIN	FOCAL	1	CFDP1
TCGA.AG.3909.01A	16	75611131	76592376	50	0.5304	SMALL-GAIN	FOCAL	5	"ADAT1,CNTNAP4,GABARAPL2,KARS,TERF2IP"
TCGA.CK.5914.01A	16	76311503	77233278	31	0.4298	SMALL-GAIN	FOCAL	2	"CNTNAP4,MON1B"
TCGA.AA.A00N.01A	16	76555919	77229390	13	0.5777	SMALL-GAIN	FOCAL	2	"CNTNAP4,MON1B"
TCGA.AA.A010.01A	16	76573564	79245478	66	0.5978	SMALL-GAIN	FOCAL	8	"ADAMTS18,CLEC3A,CNTNAP4,MON1B,NUDT7,SYCE1L,VAT1L,WWOX"
TCGA.AA.3941	16	77112563	77233167	61	0.4475	SMALL-GAIN	FOCAL	1	MON1B
TCGA.AA.A00N.01A	16	77245964	81015350	67	0.5767	SMALL-GAIN	FOCAL	10	"ADAMTS18,CDYL2,CLEC3A,CMC2,DYNLRB2,MAF,NUDT7,SYCE1L,VAT1L,WWOX"
TCGA.AA.3941	16	77310495	77436920	104	0.5462	SMALL-GAIN	FOCAL	1	ADAMTS18
TCGA.AA.3844	16	77310495	77439110	106	0.383	SMALL-GAIN	FOCAL	1	ADAMTS18
TCGA.AA.3941	16	77444508	79605582	1731	0.5559	SMALL-GAIN	FOCAL	5	"ADAMTS18,CLEC3A,NUDT7,VAT1L,WWOX"
TCGA.DM.A28K	16	77772182	78112284	238	0.4615	SMALL-GAIN	FOCAL	3	"CLEC3A,NUDT7,VAT1L"
TCGA.D5.6530	16	77819678	78020543	154	0.3812	SMALL-GAIN	FOCAL	1	VAT1L
TCGA.D5.6530	16	78023305	78188737	84	0.443	SMALL-GAIN	FOCAL	2	"CLEC3A,WWOX"
TCGA.AG.A00C.01A	16	78061959	78148836	5	0.4292	SMALL-GAIN	FOCAL	2	"CLEC3A,WWOX"
TCGA.EI.6508	16	78222724	78271065	26	0.53	SMALL-GAIN	FOCAL	1	WWOX
TCGA.D5.6532	16	78385507	78426103	39	0.5515	SMALL-GAIN	FOCAL	1	WWOX
TCGA.AA.3982	16	78926615	78931821	6	0.4273	SMALL-GAIN	FOCAL	1	WWOX
TCGA.AA.3982	16	78934514	78992478	58	0.435	SMALL-GAIN	FOCAL	1	WWOX
TCGA.AA.3941	16	79614081	79750864	96	0.5273	SMALL-GAIN	FOCAL	1	MAF
TCGA.AA.3941	16	79994199	80068413	52	0.6558	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	80332489	80430731	116	0.6084	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	80573023	80817375	142	0.6241	SMALL-GAIN	FOCAL	2	"CDYL2,DYNLRB2"
TCGA.AA.A010.01A	16	80574879	81045508	15	0.4086	SMALL-GAIN	FOCAL	4	"CDYL2,CENPN,CMC2,DYNLRB2"
TCGA.AA.3941	16	80821422	80886367	35	0.5107	SMALL-GAIN	FOCAL	1	CDYL2
TCGA.AA.3844	16	80923768	81974753	596	0.6063	SMALL-GAIN	FOCAL	10	"ATMIN,BCO1,C16orf46,CENPN,CMC2,CMIP,GAN,GCSH,PKD1L2,PLCG2"
TCGA.AG.A008.01A	16	81009942	81076734	17	0.5555	SMALL-GAIN	FOCAL	3	"ATMIN,CENPN,CMC2"
TCGA.AG.A00C.01A	16	81030882	81087590	16	0.6486	SMALL-GAIN	FOCAL	4	"ATMIN,C16orf46,CENPN,CMC2"
TCGA.AG.3909.01A	16	81075859	81097344	7	0.5567	SMALL-GAIN	FOCAL	2	"ATMIN,C16orf46"
TCGA.AA.3811	16	81076201	81975679	521	0.4469	SMALL-GAIN	FOCAL	8	"ATMIN,BCO1,C16orf46,CMIP,GAN,GCSH,PKD1L2,PLCG2"
TCGA.AA.3982	16	81104964	81391683	172	0.5473	SMALL-GAIN	FOCAL	5	"BCO1,C16orf46,GAN,GCSH,PKD1L2"
TCGA.AG.A00C.01A	16	81116449	81145746	8	0.5255	SMALL-GAIN	FOCAL	2	"GCSH,PKD1L2"
TCGA.AA.A010.01A	16	81134691	83842241	145	0.6175	SMALL-GAIN	FOCAL	10	"BCO1,CDH13,CMIP,GAN,HSBP1,HSD17B2,MPHOSPH6,PKD1L2,PLCG2,SDR42E1"
TCGA.CK.5914.01A	16	81142768	81348690	52	0.6088	SMALL-GAIN	FOCAL	3	"BCO1,GAN,PKD1L2"
TCGA.AM.5820	16	81195616	81208202	11	0.5135	SMALL-GAIN	FOCAL	1	PKD1L2
TCGA.AG.3909.01A	16	81320853	81654409	14	0.4867	SMALL-GAIN	FOCAL	3	"BCO1,CMIP,GAN"
TCGA.AA.3982	16	81396286	81957508	310	0.5324	SMALL-GAIN	FOCAL	3	"CMIP,GAN,PLCG2"
TCGA.AM.5820	16	81484199	81497782	16	0.5252	SMALL-GAIN	FOCAL	1	CMIP
TCGA.AG.A00C.01A	16	81641150	81725315	8	0.4515	SMALL-GAIN	FOCAL	1	CMIP
TCGA.AM.5820	16	81684236	81739788	23	0.6282	SMALL-GAIN	FOCAL	1	CMIP
TCGA.AG.3909.01A	16	81703695	81941989	27	0.4508	SMALL-GAIN	FOCAL	2	"CMIP,PLCG2"
TCGA.AA.A00N.01A	16	81726980	83816841	66	0.493	SMALL-GAIN	FOCAL	6	"CDH13,CMIP,HSD17B2,MPHOSPH6,PLCG2,SDR42E1"
TCGA.CK.5914.01A	16	81927260	83841605	49	0.5588	SMALL-GAIN	FOCAL	6	"CDH13,HSBP1,HSD17B2,MPHOSPH6,PLCG2,SDR42E1"
TCGA.AA.3941	16	81974753	82051114	37	0.6154	SMALL-GAIN	FOCAL	2	"PLCG2,SDR42E1"
TCGA.AA.3941	16	82120191	82266961	117	0.6072	SMALL-GAIN	FOCAL	2	"HSD17B2,MPHOSPH6"
TCGA.AA.3941	16	82278842	82349547	46	0.5474	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	16	82371089	83810690	1275	0.4583	SMALL-GAIN	FOCAL	1	CDH13
TCGA.AA.A02Y	16	83505324	83769725	230	0.4658	SMALL-GAIN	FOCAL	1	CDH13
TCGA.AG.3909.01A	16	83842241	84135177	53	0.521	SMALL-GAIN	FOCAL	6	"HSBP1,MBTPS1,MLYCD,NECAB2,OSGIN1,SLC38A8"
TCGA.AM.5820	16	83919722	84082462	83	0.4662	SMALL-GAIN	FOCAL	4	"MLYCD,NECAB2,OSGIN1,SLC38A8"
TCGA.AG.4009.01A	16	84031761	84075522	14	0.5095	SMALL-GAIN	FOCAL	2	"NECAB2,SLC38A8"
TCGA.AA.A010.01A	16	84089569	84120911	14	0.419	SMALL-GAIN	FOCAL	1	MBTPS1
TCGA.AA.A010.01A	16	84212509	84346525	19	0.5761	SMALL-GAIN	FOCAL	4	"ADAD2,KCNG4,TAF1C,WFDC1"
TCGA.AG.3909.01A	16	84255801	84488377	23	0.5683	SMALL-GAIN	FOCAL	3	"ATP2C2,KCNG4,WFDC1"
TCGA.AA.A010.01A	16	84766979	84796543	8	0.5753	SMALL-GAIN	FOCAL	1	USP10
TCGA.AA.A010.01A	16	84884134	85009942	12	0.4754	SMALL-GAIN	FOCAL	2	"CRISPLD2,ZDHHC7"
TCGA.AG.3909.01A	16	84940175	85100731	8	0.5244	SMALL-GAIN	FOCAL	3	"CRISPLD2,KIAA0513,ZDHHC7"
TCGA.AA.A00L.01A	16	85106480	85954663	49	0.5097	SMALL-GAIN	FOCAL	8	"C16orf74,COX4I1,EMC8,FAM92B,GINS2,GSE1,IRF8,KIAA0513"
TCGA.AM.5820	16	85132775	85690750	161	0.5754	SMALL-GAIN	FOCAL	2	"FAM92B,GSE1"
TCGA.D5.6538	16	85170116	86446584	698	0.5573	SMALL-GAIN	FOCAL	6	"C16orf74,COX4I1,EMC8,GINS2,GSE1,IRF8"
TCGA.AG.A01W.01A	16	86001314	86442795	40	0.5234	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	16	87246397	87252517	8	0.6099	SMALL-GAIN	FOCAL	0	None
TCGA.AM.5820	16	87879521	88289288	88	0.388	SMALL-GAIN	FOCAL	3	"BANP,CA5A,SLC7A5"
TCGA.AG.A01W.01A	16	88486046	88565217	29	0.6295	SMALL-GAIN	FOCAL	2	"ZFPM1,ZNF469"
TCGA.AY.A71X	16	88797627	88885079	15	0.4111	SMALL-GAIN	FOCAL	4	"APRT,CDT1,GALNS,PIEZO1"
TCGA.EI.6508	16	89484133	89676787	44	0.4158	SMALL-GAIN	FOCAL	4	"ANKRD11,CPNE7,RPL13,SPG7"
TCGA.AA.A01Q.01A	16	89649793	89735682	15	0.3817	SMALL-GAIN	FOCAL	4	"CHMP1A,CPNE7,DPEP1,SPATA33"
TCGA.AA.A010.01A	16	89831246	89846225	10	0.6013	SMALL-GAIN	FOCAL	1	FANCA
TCGA.A6.2678	16	90020860	90163274	41	0.4357	SMALL-GAIN	FOCAL	5	"CENPBD1,DBNDD1,DEF8,GAS8,PRDM7"
TCGA.AA.A00L.01A	16	90093990	90128319	14	0.5235	SMALL-GAIN	FOCAL	2	"GAS8,PRDM7"
TCGA.A6.6652	17	43473	175562	37	0.4758	SMALL-GAIN	FOCAL	1	RPH3AL
TCGA.A6.6652	17	489042	1030987	129	0.4051	SMALL-GAIN	FOCAL	8	"ABR,FAM57A,GEMIN4,GLOD4,NXN,RNMTL1,TIMM22,VPS53"
TCGA.AG.A01W.01A	17	857203	900478	8	0.5191	SMALL-GAIN	FOCAL	2	"NXN,TIMM22"
TCGA.AA.A010.01A	17	1248676	1359119	9	0.4172	SMALL-GAIN	FOCAL	2	"CRK,YWHAE"
TCGA.AG.3906.01A	17	1326760	1401183	15	0.5978	SMALL-GAIN	FOCAL	3	"CRK,INPP5K,MYO1C"
TCGA.AA.A01Q.01A	17	1587718	1650271	14	0.4243	SMALL-GAIN	FOCAL	4	"PRPF8,SERPINF2,TLCD2,WDR81"
TCGA.AA.A010.01A	17	1657385	1839771	35	0.5888	SMALL-GAIN	FOCAL	5	"RPA1,RTN4RL1,SERPINF1,SERPINF2,SMYD4"
TCGA.AA.A024.01A	17	1690057	1707873	4	0.5655	SMALL-GAIN	FOCAL	1	SMYD4
TCGA.CK.5914.01A	17	1972040	2091665	6	0.4683	SMALL-GAIN	FOCAL	1	SMG6
TCGA.AG.A016.01A	17	2264882	2281098	14	0.5497	SMALL-GAIN	FOCAL	1	SGSM2
TCGA.AG.A015.01A	17	2264882	2282670	15	0.4972	SMALL-GAIN	FOCAL	1	SGSM2
TCGA.AA.3509.01A	17	3343404	3365735	5	0.6752	SMALL-GAIN	FOCAL	1	SPATA22
TCGA.AA.3850	17	3418597	3579857	56	0.60425	SMALL-GAIN	FOCAL	7	"CTNS,EMC6,P2RX5,SHPK,TAX1BP3,TRPV1,TRPV3"
TCGA.AA.A010.01A	17	3424212	3539329	33	0.5643	SMALL-GAIN	FOCAL	3	"SHPK,TRPV1,TRPV3"
TCGA.AA.A024.01A	17	3558243	3577078	11	0.648	SMALL-GAIN	FOCAL	4	"CTNS,EMC6,P2RX5,TAX1BP3"
TCGA.AA.A010.01A	17	3910124	3947470	17	0.4967	SMALL-GAIN	FOCAL	1	ZZEF1
TCGA.AA.A00N.01A	17	3936070	4045828	39	0.6227	SMALL-GAIN	FOCAL	1	ZZEF1
TCGA.AA.A010.01A	17	4167132	4356272	13	0.6754	SMALL-GAIN	FOCAL	3	"ANKFY1,SPNS3,UBE2G1"
TCGA.AA.A00N.01A	17	4337211	4434295	15	0.5681	SMALL-GAIN	FOCAL	2	"SPNS2,SPNS3"
TCGA.AG.A015.01A	17	4439324	4455764	12	0.4378	SMALL-GAIN	FOCAL	2	"MYBBP1A,SPNS2"
TCGA.AG.A015.01A	17	4619210	4622541	7	0.5141	SMALL-GAIN	FOCAL	1	ARRB2
TCGA.AG.3906.01A	17	4699958	4725906	17	0.5115	SMALL-GAIN	FOCAL	2	"PLD2,PSMB6"
TCGA.AG.A01W.01A	17	4974357	4988670	17	0.4969	SMALL-GAIN	FOCAL	1	ZFP3
TCGA.AA.A01F.01A	17	5037175	5047945	9	0.5744	SMALL-GAIN	FOCAL	1	USP6
TCGA.AA.A010.01A	17	5071186	5371851	66	0.4457	SMALL-GAIN	FOCAL	8	"C1QBP,DHX33,NUP88,RABEP1,RPAIN,SCIMP,USP6,ZNF594"
TCGA.AA.A00N.01A	17	5424171	5437166	6	0.5761	SMALL-GAIN	FOCAL	1	NLRP1
TCGA.AA.A00D.01A	17	5991293	5993610	2	0.4989	SMALL-GAIN	FOCAL	1	WSCD1
TCGA.AA.A010.01A	17	6021269	6406774	29	0.5445	SMALL-GAIN	FOCAL	4	"AIPL1,FAM64A,PITPNM3,WSCD1"
TCGA.AA.A010.01A	17	6544351	6900128	41	0.5188	SMALL-GAIN	FOCAL	8	"ALOX12,C17orf100,FBXO39,MED31,SLC13A5,TEKT1,TXNDC17,XAF1"
TCGA.AA.A010.01A	17	6944950	7095161	22	0.6674	SMALL-GAIN	FOCAL	5	"ASGR1,ASGR2,CLEC10A,DLG4,SLC16A11"
TCGA.AG.A016.01A	17	7123735	7131243	12	0.5723	SMALL-GAIN	FOCAL	2	"ACADVL,DVL2"
TCGA.AG.A016.01A	17	7165110	7196749	12	0.5406	SMALL-GAIN	FOCAL	3	"CLDN7,SLC2A4,YBX2"
TCGA.AG.3891.01A	17	7306386	7328970	13	0.545	SMALL-GAIN	FOCAL	4	"C17orf74,NLGN2,SPEM1,TMEM256"
TCGA.AA.A010.01A	17	7554810	7710496	75	0.462	SMALL-GAIN	FOCAL	5	"ATP1B2,DNAH2,EFNB3,TP53,WRAP53"
TCGA.AG.A016.01A	17	7750716	7755765	5	0.435	SMALL-GAIN	FOCAL	1	KDM6B
TCGA.AA.A00A.01A	17	7762689	7811179	30	0.6745	SMALL-GAIN	FOCAL	2	"CHD3,CYB5D1"
TCGA.AA.A00D.01A	17	7762689	7833894	44	0.4021	SMALL-GAIN	FOCAL	4	"CHD3,CYB5D1,KCNAB3,TRAPPC1"
TCGA.AG.3906.01A	17	7814730	7828926	5	0.388	SMALL-GAIN	FOCAL	2	"CHD3,KCNAB3"
TCGA.AA.A010.01A	17	8108149	8146266	20	0.442	SMALL-GAIN	FOCAL	2	"AURKB,CTC1"
TCGA.AA.A00D.01A	17	8248949	8366554	14	0.5969	SMALL-GAIN	FOCAL	5	"KRBA2,NDEL1,ODF4,RNF222,RPL26"
TCGA.AA.A00A.01A	17	8421910	8526203	16	0.5484	SMALL-GAIN	FOCAL	1	MYH10
TCGA.AA.A00Q.01A	17	9124424	9792718	39	0.4885	SMALL-GAIN	FOCAL	6	"CFAP52,DHRS7C,GLP2R,NTN1,STX8,USP43"
TCGA.A6.2681	17	9301785	9332106	16	0.5093	SMALL-GAIN	FOCAL	1	STX8
TCGA.A6.2681	17	9383571	10016208	298	0.5168	SMALL-GAIN	FOCAL	7	"CFAP52,DHRS7C,GAS7,GLP2R,RCVRN,STX8,USP43"
TCGA.AG.A016.01A	17	9545024	9596392	10	0.3931	SMALL-GAIN	FOCAL	2	"CFAP52,USP43"
TCGA.AA.A00N.01A	17	9578163	10231135	66	0.6487	SMALL-GAIN	FOCAL	6	"DHRS7C,GAS7,GLP2R,MYH13,RCVRN,USP43"
TCGA.AA.A010.01A	17	10312361	10364206	26	0.4266	SMALL-GAIN	FOCAL	2	"MYH4,MYH8"
TCGA.AA.3968	17	10412479	10639370	67	0.3944	SMALL-GAIN	FOCAL	6	"ADPRM,MYH1,MYH2,MYH3,SCO1,TMEM220"
TCGA.AA.A00D.01A	17	10590017	11514918	18	0.383	SMALL-GAIN	FOCAL	6	"ADPRM,DNAH9,PIRT,SCO1,SHISA6,TMEM220"
TCGA.AA.A010.01A	17	11282687	11845578	69	0.5567	SMALL-GAIN	FOCAL	2	"DNAH9,SHISA6"
TCGA.AA.A00N.01A	17	11872605	12852429	43	0.4781	SMALL-GAIN	FOCAL	5	"ARHGAP44,DNAH9,MAP2K4,MYOCD,ZNF18"
TCGA.AA.A010.01A	17	11984626	15234293	93	0.6384	SMALL-GAIN	FOCAL	10	"ARHGAP44,CDRT15,COX10,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYOCD,PMP22,TEKT3"
TCGA.AA.A00N.01A	17	12920978	15343442	32	0.6754	SMALL-GAIN	FOCAL	9	"CDRT15,CDRT4,COX10,ELAC2,HS3ST3A1,HS3ST3B1,PMP22,TEKT3,TVP23C-CDRT4"
TCGA.AA.A00N.01A	17	15466668	15510840	8	0.5234	SMALL-GAIN	FOCAL	3	"CDRT1,TVP23C,TVP23C-CDRT4"
TCGA.AG.3906.01A	17	15531942	15545983	5	0.5595	SMALL-GAIN	FOCAL	1	TRIM16
TCGA.AG.3906.01A	17	15877956	15909744	10	0.4818	SMALL-GAIN	FOCAL	3	"ADORA2B,TTC19,ZSWIM7"
TCGA.AF.3914.01A	17	16120504	16185265	3	0.5018	SMALL-GAIN	FOCAL	1	PIGL
TCGA.AG.3906.01A	17	16229062	16253208	5	0.4478	SMALL-GAIN	FOCAL	2	"CENPV,PIGL"
TCGA.AA.A00N.01A	17	17769558	17787899	6	0.6121	SMALL-GAIN	FOCAL	1	TOM1L2
TCGA.AA.A010.01A	17	17782889	17943132	30	0.5042	SMALL-GAIN	FOCAL	4	"ATPAF2,GID4,LRRC48,TOM1L2"
TCGA.AG.A016.01A	17	18007063	18028423	8	0.4329	SMALL-GAIN	FOCAL	2	"DRG2,MYO15A"
TCGA.AA.A01Q.01A	17	18034504	18110082	12	0.415	SMALL-GAIN	FOCAL	2	"ALKBH5,MYO15A"
TCGA.AG.3906.01A	17	18098218	18158441	27	0.478	SMALL-GAIN	FOCAL	3	"ALKBH5,FLII,LLGL1"
TCGA.AG.3891.01A	17	18133238	18141334	8	0.5061	SMALL-GAIN	FOCAL	1	LLGL1
TCGA.AG.A016.01A	17	18135790	18178064	24	0.4191	SMALL-GAIN	FOCAL	4	"FLII,LLGL1,MIEF2,TOP3A"
TCGA.AA.3930.01A	17	18185965	18202810	7	0.4019	SMALL-GAIN	FOCAL	1	TOP3A
TCGA.F5.6811.01A	17	18227499	18338219	15	0.6204	SMALL-GAIN	FOCAL	3	"EVPLL,SHMT1,SMCR8"
TCGA.AZ.4684.01A	17	18393973	18513340	11	0.6016	SMALL-GAIN	FOCAL	1	LGALS9C
TCGA.AA.A00N.01A	17	18630829	18671795	13	0.5237	SMALL-GAIN	FOCAL	2	"FBXW10,TRIM16L"
TCGA.DY.A1DG	17	18661326	18831005	25	0.566	SMALL-GAIN	FOCAL	3	"FBXW10,PRPSAP2,TVP23B"
TCGA.AG.3909.01A	17	18814364	18880129	13	0.4142	SMALL-GAIN	FOCAL	3	"FAM83G,PRPSAP2,SLC5A10"
TCGA.AA.3930.01A	17	18861944	18862868	3	0.5795	SMALL-GAIN	FOCAL	1	SLC5A10
TCGA.DY.A1DG	17	19177062	19550269	70	0.3861	SMALL-GAIN	FOCAL	6	"B9D1,EPN2,MAPK7,MFAP4,RNF112,SLC47A1"
TCGA.AA.A00L.01A	17	19250384	19615950	51	0.4804	SMALL-GAIN	FOCAL	7	"ALDH3A2,B9D1,MAPK7,MFAP4,RNF112,SLC47A1,SLC47A2"
TCGA.AA.A00D.01A	17	19470036	19615950	27	0.3812	SMALL-GAIN	FOCAL	3	"ALDH3A2,SLC47A1,SLC47A2"
TCGA.AA.A00L.01A	17	19679590	20363639	56	0.5507	SMALL-GAIN	FOCAL	4	"AKAP10,LGALS9B,SPECC1,ULK2"
TCGA.AA.A00Q.01A	17	19686998	19729429	12	0.5613	SMALL-GAIN	FOCAL	1	ULK2
TCGA.AA.A010.01A	17	19770586	19823289	5	0.4475	SMALL-GAIN	FOCAL	2	"AKAP10,ULK2"
TCGA.AA.A010.01A	17	20107635	20370667	28	0.5696	SMALL-GAIN	FOCAL	2	"LGALS9B,SPECC1"
TCGA.AA.3975	17	20384919	21519099	149	0.4794	SMALL-GAIN	FOCAL	10	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.AA.3956	17	20673511	22217679	191	0.53	SMALL-GAIN	FOCAL	10	"C17orf51,CCDC144NL,DHRS7B,KCNJ12,KCNJ18,MAP2K3,MTRNR2L1,NATD1,TMEM11,USP22"
TCGA.DM.A288	17	20708583	21901754	154	0.4371	SMALL-GAIN	FOCAL	9	"C17orf51,CCDC144NL,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.AA.3850	17	20801738	21709232	124	0.48305	SMALL-GAIN	FOCAL	8	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.A6.5667	17	20834923	21519099	116	0.4064	SMALL-GAIN	FOCAL	8	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.AA.3679	17	20860847	20983510	36	0.4057	SMALL-GAIN	FOCAL	1	USP22
TCGA.DM.A285	17	20983510	21709232	77	0.6329	SMALL-GAIN	FOCAL	7	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11"
TCGA.AA.3841	17	21050157	21519099	68	0.3904	SMALL-GAIN	FOCAL	7	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11"
TCGA.4N.A93T	17	21127087	25313689	109	0.4405	SMALL-GAIN	FOCAL	6	"C17orf51,KCNJ12,KCNJ18,MAP2K3,MTRNR2L1,NATD1"
TCGA.A6.5660	17	22217882	25736314	78	0.5324	SMALL-GAIN	FOCAL	1	WSB1
TCGA.AG.A01W.01A	17	24932408	24972322	15	0.5141	SMALL-GAIN	FOCAL	0	None
TCGA.AM.5820	17	25899925	26115948	53	0.5203	SMALL-GAIN	FOCAL	3	"KSR1,LGALS9,NOS2"
TCGA.AA.A010.01A	17	25904515	26116576	52	0.6592	SMALL-GAIN	FOCAL	3	"KSR1,LGALS9,NOS2"
TCGA.AG.3909.01A	17	25931654	26095964	28	0.5866	SMALL-GAIN	FOCAL	3	"KSR1,LGALS9,NOS2"
TCGA.AG.A00C.01A	17	26109000	26207250	8	0.5528	SMALL-GAIN	FOCAL	2	"LYRM9,NOS2"
TCGA.AA.3979	17	26181864	26337891	39	0.6418	SMALL-GAIN	FOCAL	1	LYRM9
TCGA.AG.3909.01A	17	26206420	26603853	16	0.4476	SMALL-GAIN	FOCAL	2	"LYRM9,NLK"
TCGA.AA.A00N.01A	17	26449592	26603853	12	0.5181	SMALL-GAIN	FOCAL	1	NLK
TCGA.AG.A00C.01A	17	26633042	26726612	39	0.4346	SMALL-GAIN	FOCAL	9	"IFT20,POLDIP2,SARM1,SEBOX,SLC46A1,TMEM199,TMEM97,TNFAIP1,VTN"
TCGA.AA.A00L.01A	17	26694342	26850937	24	0.4587	SMALL-GAIN	FOCAL	4	"SARM1,SLC13A2,SLC46A1,VTN"
TCGA.AG.4009.01A	17	26731617	26864087	20	0.4211	SMALL-GAIN	FOCAL	3	"FOXN1,SLC13A2,SLC46A1"
TCGA.CK.5914.01A	17	26732865	26850937	13	0.5364	SMALL-GAIN	FOCAL	2	"SLC13A2,SLC46A1"
TCGA.AG.3909.01A	17	26732865	26851474	14	0.3879	SMALL-GAIN	FOCAL	3	"FOXN1,SLC13A2,SLC46A1"
TCGA.AA.A02O	17	26789270	26899501	22	0.6683	SMALL-GAIN	FOCAL	4	"FOXN1,PIGS,SLC13A2,UNC119"
TCGA.AA.3967.01A	17	26904979	27052875	103	0.4426	SMALL-GAIN	FOCAL	10	"KIAA0100,NARR,PROCA1,RAB34,RPL23A,SDF2,SGK494,SPAG5,SUPT6H,TLCD1"
TCGA.AG.3906.01A	17	26959921	27047319	59	0.6742	SMALL-GAIN	FOCAL	7	"KIAA0100,NARR,PROCA1,RAB34,RPL23A,SDF2,SUPT6H"
TCGA.CK.5914.01A	17	26988707	27008226	11	0.5019	SMALL-GAIN	FOCAL	2	"SDF2,SUPT6H"
TCGA.AG.3909.01A	17	27085236	27208802	13	0.3816	SMALL-GAIN	FOCAL	3	"ERAL1,FAM222B,FLOT2"
TCGA.AG.4009.01A	17	27085236	27208802	13	0.4543	SMALL-GAIN	FOCAL	3	"ERAL1,FAM222B,FLOT2"
TCGA.AG.4009.01A	17	27430551	27580609	22	0.5563	SMALL-GAIN	FOCAL	2	"CRYBA1,MYO18A"
TCGA.AA.3869	17	27536631	28121165	67	0.5191	SMALL-GAIN	FOCAL	9	"ABHD15,ANKRD13B,CORO6,CRYBA1,GIT1,NUFIP2,SSH2,TAOK1,TP53I13"
TCGA.AG.A026	17	27924178	28865660	96	0.488	SMALL-GAIN	FOCAL	10	"ANKRD13B,BLMH,CORO6,CPD,EFCAB5,GOSR1,NSRP1,SLC6A4,SSH2,TMIGD1"
TCGA.AA.A00N.01A	17	28320141	28544156	37	0.5458	SMALL-GAIN	FOCAL	3	"EFCAB5,NSRP1,SLC6A4"
TCGA.AA.A00L.01A	17	28380236	28444067	6	0.4744	SMALL-GAIN	FOCAL	2	"EFCAB5,NSRP1"
TCGA.AA.A00N.01A	17	28747807	28811662	22	0.5191	SMALL-GAIN	FOCAL	2	"CPD,GOSR1"
TCGA.AA.A00Q.01A	17	29161117	29527393	44	0.665	SMALL-GAIN	FOCAL	5	"ADAP2,ATAD5,NF1,RNF135,TEFM"
TCGA.AA.3869	17	29161357	29749443	61	0.5404	SMALL-GAIN	FOCAL	9	"ADAP2,ATAD5,EVI2A,EVI2B,NF1,OMG,RAB11FIP4,RNF135,TEFM"
TCGA.AA.3509.01A	17	29325663	29687488	57	0.4894	SMALL-GAIN	FOCAL	5	"EVI2A,EVI2B,NF1,OMG,RNF135"
TCGA.AA.A00N.01A	17	29422290	29654566	41	0.5354	SMALL-GAIN	FOCAL	4	"EVI2A,EVI2B,NF1,OMG"
TCGA.AZ.4684.01A	17	29482984	29687488	55	0.4343	SMALL-GAIN	FOCAL	4	"EVI2A,EVI2B,NF1,OMG"
TCGA.RU.A8FL	17	29639589	29941965	66	0.6312	SMALL-GAIN	FOCAL	4	"EVI2A,EVI2B,NF1,RAB11FIP4"
TCGA.AG.3891.01A	17	29854804	30678773	91	0.5331	SMALL-GAIN	FOCAL	9	"C17orf75,COPRS,LRRC37B,RAB11FIP4,RHBDL3,RHOT1,SUZ12,UTP6,ZNF207"
TCGA.AG.3906.01A	17	30202206	30801716	95	0.6494	SMALL-GAIN	FOCAL	8	"C17orf75,LRRC37B,PSMD11,RHBDL3,RHOT1,SUZ12,UTP6,ZNF207"
TCGA.CK.5914.01A	17	30207540	30214195	4	0.4183	SMALL-GAIN	FOCAL	1	UTP6
TCGA.AA.A00D.01A	17	30520957	30647945	19	0.3868	SMALL-GAIN	FOCAL	2	"RHBDL3,RHOT1"
TCGA.AG.A00C.01A	17	30658745	30666785	8	0.6095	SMALL-GAIN	FOCAL	1	C17orf75
TCGA.CK.5914.01A	17	30692341	30771486	6	0.4946	SMALL-GAIN	FOCAL	2	"PSMD11,ZNF207"
TCGA.AG.3891.01A	17	30791471	30821739	11	0.5206	SMALL-GAIN	FOCAL	3	"CDK5R1,MYO1D,PSMD11"
TCGA.AG.3909.01A	17	30821739	32690096	60	0.425	SMALL-GAIN	FOCAL	10	"ASIC2,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,MYO1D,SPACA3,TMEM98"
TCGA.AA.A010.01A	17	30932087	31107565	19	0.5759	SMALL-GAIN	FOCAL	1	MYO1D
TCGA.CK.5914.01A	17	31263312	32690096	38	0.5609	SMALL-GAIN	FOCAL	9	"ASIC2,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,SPACA3,TMEM98"
TCGA.AA.A010.01A	17	31318877	31438886	15	0.6645	SMALL-GAIN	FOCAL	2	"ASIC2,SPACA3"
TCGA.AG.4009.01A	17	31318877	32690096	34	0.5253	SMALL-GAIN	FOCAL	8	"ASIC2,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,SPACA3"
TCGA.AA.3994	17	32150132	33090075	525	0.5108	SMALL-GAIN	FOCAL	9	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,TMEM132E"
TCGA.AA.A010.01A	17	32905861	32964744	12	0.592	SMALL-GAIN	FOCAL	2	"C17orf102,TMEM132E"
TCGA.AG.3909.01A	17	33318696	33353343	21	0.5786	SMALL-GAIN	FOCAL	2	"LIG3,RFFL"
TCGA.CK.5914.01A	17	33325238	33430207	18	0.4165	SMALL-GAIN	FOCAL	3	"LIG3,RAD51D,RFFL"
TCGA.AA.3875	17	33353331	33576893	64	0.5249	SMALL-GAIN	FOCAL	7	"FNDC8,NLE1,RAD51D,RFFL,SLC35G3,SLFN5,UNC45B"
TCGA.AG.A00C.01A	17	33427915	33466901	22	0.4007	SMALL-GAIN	FOCAL	3	"FNDC8,NLE1,RAD51D"
TCGA.AA.3968	17	33460366	33598060	51	0.4119	SMALL-GAIN	FOCAL	4	"NLE1,SLC35G3,SLFN5,UNC45B"
TCGA.AG.3909.01A	17	33490964	33507537	10	0.5049	SMALL-GAIN	FOCAL	1	UNC45B
TCGA.CK.5914.01A	17	33490964	33507537	10	0.504	SMALL-GAIN	FOCAL	1	UNC45B
TCGA.AA.A00N.01A	17	33490964	33510409	11	0.5607	SMALL-GAIN	FOCAL	1	UNC45B
TCGA.AA.A00D.01A	17	33507537	33954403	38	0.6105	SMALL-GAIN	FOCAL	10	"AP2B1,PEX12,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B"
TCGA.AG.3909.01A	17	33951386	34009663	12	0.4459	SMALL-GAIN	FOCAL	1	AP2B1
TCGA.AA.A01Q.01A	17	34257052	34432560	28	0.4233	SMALL-GAIN	FOCAL	9	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL4,LYZL6,RDM1"
TCGA.CK.5914.01A	17	34266172	34341314	15	0.5182	SMALL-GAIN	FOCAL	5	"CCL14,CCL15,CCL16,CCL23,LYZL6"
TCGA.AA.3556	17	34449419	34477479	11	0.6144	SMALL-GAIN	FOCAL	0	None
TCGA.CI.6622	17	34449419	34477479	11	0.5804	SMALL-GAIN	FOCAL	0	None
TCGA.A6.3808.01A	17	34948393	35696710	84	0.62	SMALL-GAIN	FOCAL	5	"AATF,ACACA,DHRS11,LHX1,MRM1"
TCGA.AA.A00L.01A	17	34951364	35306370	13	0.5028	SMALL-GAIN	FOCAL	4	"AATF,DHRS11,LHX1,MRM1"
TCGA.AG.A01W.01A	17	35075093	35084331	8	0.6064	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3556	17	35189090	35310630	49	0.45	SMALL-GAIN	FOCAL	2	"AATF,LHX1"
TCGA.AG.A01W.01A	17	35273803	35286460	8	0.417	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	17	35343889	35696710	64	0.42	SMALL-GAIN	FOCAL	2	"AATF,ACACA"
TCGA.AA.A010.01A	17	35348016	35620541	51	0.6083	SMALL-GAIN	FOCAL	2	"AATF,ACACA"
TCGA.AG.3891.01A	17	35640120	35880199	32	0.5028	SMALL-GAIN	FOCAL	5	"ACACA,C17orf78,DUSP14,SYNRG,TADA2A"
TCGA.AG.3611.01A	17	35783567	35818581	7	0.6114	SMALL-GAIN	FOCAL	1	TADA2A
TCGA.AA.A010.01A	17	35974268	36060957	17	0.4683	SMALL-GAIN	FOCAL	2	"DDX52,HNF1B"
TCGA.AG.4009.01A	17	36003305	36091555	7	0.4492	SMALL-GAIN	FOCAL	2	"DDX52,HNF1B"
TCGA.CK.5914.01A	17	36003305	36091555	7	0.6056	SMALL-GAIN	FOCAL	2	"DDX52,HNF1B"
TCGA.AG.3891.01A	17	36454378	36689505	30	0.5794	SMALL-GAIN	FOCAL	5	"ARHGAP23,GPR179,MRPL45,SOCS7,SRCIN1"
TCGA.AG.4009.01A	17	36455290	36491904	16	0.6316	SMALL-GAIN	FOCAL	2	"GPR179,MRPL45"
TCGA.AA.A00L.01A	17	36482361	36894557	34	0.6	SMALL-GAIN	FOCAL	8	"ARHGAP23,C17orf96,CISD3,GPR179,MLLT6,PCGF2,SOCS7,SRCIN1"
TCGA.CK.5914.01A	17	36520594	36552064	7	0.56	SMALL-GAIN	FOCAL	1	SOCS7
TCGA.AF.3914.01A	17	36873654	36878910	6	0.4929	SMALL-GAIN	FOCAL	1	MLLT6
TCGA.AA.A00Q.01A	17	37373032	37686878	49	0.5038	SMALL-GAIN	FOCAL	4	"CDK12,FBXL20,MED1,STAC2"
TCGA.AG.4009.01A	17	37374070	37459764	14	0.5012	SMALL-GAIN	FOCAL	2	"FBXL20,STAC2"
TCGA.AA.A010.01A	17	37374070	37557535	17	0.5524	SMALL-GAIN	FOCAL	2	"FBXL20,STAC2"
TCGA.AG.4009.01A	17	37579530	37686878	26	0.4468	SMALL-GAIN	FOCAL	2	"CDK12,MED1"
TCGA.AA.A010.01A	17	37587308	37686878	22	0.5172	SMALL-GAIN	FOCAL	2	"CDK12,MED1"
TCGA.CK.5914.01A	17	37665885	37686878	8	0.5656	SMALL-GAIN	FOCAL	1	CDK12
TCGA.AA.A02K.01A	17	37814607	37830805	16	0.5341	SMALL-GAIN	FOCAL	4	"PGAP3,PNMT,STARD3,TCAP"
TCGA.AG.A016.01A	17	37814928	37885717	34	0.6586	SMALL-GAIN	FOCAL	6	"ERBB2,MIEN1,PGAP3,PNMT,STARD3,TCAP"
TCGA.AG.A00C.01A	17	38026920	38153512	35	0.4872	SMALL-GAIN	FOCAL	6	"GSDMA,GSDMB,LRRC3C,ORMDL3,PSMD3,ZPBP2"
TCGA.AG.3906.01A	17	38061038	38191915	50	0.5466	SMALL-GAIN	FOCAL	7	"CSF3,GSDMA,GSDMB,LRRC3C,MED24,ORMDL3,PSMD3"
TCGA.AA.A00D.01A	17	38061038	38252669	53	0.4332	SMALL-GAIN	FOCAL	9	"CSF3,GSDMA,GSDMB,LRRC3C,MED24,NR1D1,ORMDL3,PSMD3,THRA"
TCGA.AG.A01W.01A	17	38066157	38087255	16	0.3797	SMALL-GAIN	FOCAL	2	"GSDMB,ORMDL3"
TCGA.AG.A016.01A	17	38285481	38340444	18	0.5856	SMALL-GAIN	FOCAL	3	"CASC3,MSL1,RAPGEFL1"
TCGA.AA.A00N.01A	17	38349864	38445651	9	0.6565	SMALL-GAIN	FOCAL	3	"CDC6,RAPGEFL1,WIPF2"
TCGA.AA.A01Q.01A	17	38412644	38434377	7	0.6093	SMALL-GAIN	FOCAL	1	WIPF2
TCGA.AG.3909.01A	17	38412644	38452888	14	0.5744	SMALL-GAIN	FOCAL	2	"CDC6,WIPF2"
TCGA.AG.4009.01A	17	38412644	38487422	18	0.5545	SMALL-GAIN	FOCAL	3	"CDC6,RARA,WIPF2"
TCGA.AG.A00C.01A	17	38450588	38572945	41	0.4086	SMALL-GAIN	FOCAL	4	"CDC6,GJD3,RARA,TOP2A"
TCGA.AG.A016.01A	17	38487422	38546197	10	0.4858	SMALL-GAIN	FOCAL	3	"GJD3,RARA,TOP2A"
TCGA.AA.A010.01A	17	38634769	38721568	13	0.5785	SMALL-GAIN	FOCAL	2	"CCR7,TNS4"
TCGA.AG.A00C.01A	17	38788409	38818117	11	0.3838	SMALL-GAIN	FOCAL	2	"KRT222,SMARCE1"
TCGA.AA.A010.01A	17	38801762	38954448	40	0.5626	SMALL-GAIN	FOCAL	7	"KRT222,KRT24,KRT25,KRT26,KRT27,KRT28,SMARCE1"
TCGA.AG.3909.01A	17	38854447	38922735	16	0.4323	SMALL-GAIN	FOCAL	3	"KRT24,KRT25,KRT26"
TCGA.AG.A00C.01A	17	38948628	39018766	17	0.4066	SMALL-GAIN	FOCAL	4	"KRT10,KRT12,KRT28,TMEM99"
TCGA.CK.5914.01A	17	39092423	39183202	18	0.6266	SMALL-GAIN	FOCAL	7	"KRT23,KRT39,KRT40,KRTAP1-5,KRTAP3-1,KRTAP3-2,KRTAP3-3"
TCGA.AG.4015	17	39727017	39896842	27	0.3983	SMALL-GAIN	FOCAL	7	"EIF1,GAST,HAP1,KRT14,KRT16,KRT17,KRT9"
TCGA.AG.3727	17	39874266	39947008	15	0.5964	SMALL-GAIN	FOCAL	2	"HAP1,JUP"
TCGA.AG.3906.01A	17	39887679	40021051	41	0.6517	SMALL-GAIN	FOCAL	7	"FKBP10,HAP1,JUP,KLHL10,KLHL11,NT5C3B,P3H4"
TCGA.AA.A00N.01A	17	39890386	39927847	12	0.41	SMALL-GAIN	FOCAL	2	"HAP1,JUP"
TCGA.AG.4009.01A	17	40040425	40180020	51	0.4352	SMALL-GAIN	FOCAL	6	"ACLY,CNP,DNAJC7,NKIRAS2,TTC25,ZNF385C"
TCGA.AA.A010.01A	17	40060911	40129214	26	0.4176	SMALL-GAIN	FOCAL	4	"ACLY,CNP,DNAJC7,TTC25"
TCGA.AG.3909.01A	17	40476682	40500370	11	0.4728	SMALL-GAIN	FOCAL	1	STAT3
TCGA.CK.5914.01A	17	40476682	40500370	11	0.5393	SMALL-GAIN	FOCAL	1	STAT3
TCGA.AA.3524	17	40491679	40618250	26	0.4529	SMALL-GAIN	FOCAL	3	"ATP6V0A1,PTRF,STAT3"
TCGA.CK.5914.01A	17	40629620	40666260	16	0.5325	SMALL-GAIN	FOCAL	1	ATP6V0A1
TCGA.AG.3909.01A	17	40629620	40690634	20	0.5464	SMALL-GAIN	FOCAL	2	"ATP6V0A1,NAGLU"
TCGA.AG.4009.01A	17	40704921	40811803	37	0.5359	SMALL-GAIN	FOCAL	7	"COASY,FAM134C,HSD17B1,MLX,PSMC3IP,TUBG1,TUBG2"
TCGA.AG.3909.01A	17	40820115	40828372	9	0.3907	SMALL-GAIN	FOCAL	1	PLEKHH3
TCGA.AA.A00L.01A	17	40913788	40950536	24	0.6525	SMALL-GAIN	FOCAL	4	"COA3,RAMP2,VPS25,WNK4"
TCGA.AG.3909.01A	17	41003311	41116367	19	0.4476	SMALL-GAIN	FOCAL	4	"AARSD1,AOC3,G6PC,PTGES3L-AARSD1"
TCGA.AG.4009.01A	17	41052856	41109087	12	0.4376	SMALL-GAIN	FOCAL	3	"AARSD1,G6PC,PTGES3L-AARSD1"
TCGA.F4.6704	17	41056244	41197273	32	0.3825	SMALL-GAIN	FOCAL	10	"AARSD1,BRCA1,G6PC,IFI35,PTGES3L,PTGES3L-AARSD1,RND2,RPL27,RUNDC1,VAT1"
TCGA.AG.3909.01A	17	41158914	41267679	32	0.463	SMALL-GAIN	FOCAL	4	"BRCA1,IFI35,RND2,VAT1"
TCGA.AA.A00L.01A	17	41166088	41180407	10	0.3951	SMALL-GAIN	FOCAL	3	"IFI35,RND2,VAT1"
TCGA.AG.4009.01A	17	41197645	41256829	19	0.3953	SMALL-GAIN	FOCAL	1	BRCA1
TCGA.AG.4009.01A	17	41291886	41622279	58	0.4928	SMALL-GAIN	FOCAL	5	"ARL4D,DHX8,ETV4,NBR1,TMEM106A"
TCGA.AG.3909.01A	17	41327779	41611179	56	0.5074	SMALL-GAIN	FOCAL	5	"ARL4D,DHX8,ETV4,NBR1,TMEM106A"
TCGA.AA.A010.01A	17	41327779	41832663	63	0.5971	SMALL-GAIN	FOCAL	7	"ARL4D,DHX8,ETV4,MEOX1,NBR1,SOST,TMEM106A"
TCGA.CK.5914.01A	17	41570022	41611179	24	0.6139	SMALL-GAIN	FOCAL	2	"DHX8,ETV4"
TCGA.AG.4009.01A	17	41924509	42030255	20	0.5429	SMALL-GAIN	FOCAL	4	"CD300LG,MPP2,PPY,PYY"
TCGA.AA.A00N.01A	17	41930243	41977793	15	0.6615	SMALL-GAIN	FOCAL	2	"CD300LG,MPP2"
TCGA.AG.4009.01A	17	42152681	42249366	30	0.4423	SMALL-GAIN	FOCAL	4	"ASB16,C17orf53,G6PC3,HDAC5"
TCGA.AG.A00C.01A	17	42267822	42293847	21	0.5792	SMALL-GAIN	FOCAL	3	"ATXN7L3,TMUB2,UBTF"
TCGA.AG.4009.01A	17	42327765	42339963	15	0.4265	SMALL-GAIN	FOCAL	1	SLC4A1
TCGA.AG.4009.01A	17	42756186	42818672	15	0.4756	SMALL-GAIN	FOCAL	2	"CCDC43,DBF4B"
TCGA.CK.5914.01A	17	42786097	42824712	12	0.4151	SMALL-GAIN	FOCAL	1	DBF4B
TCGA.AG.3906.01A	17	42800210	42962574	53	0.6334	SMALL-GAIN	FOCAL	5	"ADAM11,DBF4B,EFTUD2,GJC1,HIGD1B"
TCGA.AG.4009.01A	17	42854798	42984639	39	0.4338	SMALL-GAIN	FOCAL	6	"ADAM11,CCDC103,EFTUD2,GFAP,GJC1,HIGD1B"
TCGA.AG.3891.01A	17	42881948	42991329	44	0.3901	SMALL-GAIN	FOCAL	5	"CCDC103,EFTUD2,GFAP,GJC1,HIGD1B"
TCGA.AA.A00N.01A	17	42929050	42957877	19	0.6529	SMALL-GAIN	FOCAL	1	EFTUD2
TCGA.CK.5914.01A	17	42936397	42963911	17	0.595	SMALL-GAIN	FOCAL	1	EFTUD2
TCGA.CM.6166	17	42941467	43018656	28	0.4574	SMALL-GAIN	FOCAL	4	"CCDC103,EFTUD2,GFAP,KIF18B"
TCGA.AG.4009.01A	17	42991329	43013362	12	0.5224	SMALL-GAIN	FOCAL	2	"GFAP,KIF18B"
TCGA.AG.3891.01A	17	43037508	43182901	18	0.5548	SMALL-GAIN	FOCAL	3	"C1QL1,DCAKD,NMT1"
TCGA.AG.3906.01A	17	43112095	43246381	34	0.5137	SMALL-GAIN	FOCAL	6	"ACBD4,DCAKD,HEXIM1,HEXIM2,NMT1,PLCD3"
TCGA.AG.3891.01A	17	43226630	43309685	6	0.5458	SMALL-GAIN	FOCAL	3	"FMNL1,HEXIM1,HEXIM2"
TCGA.AA.A00L.01A	17	43320463	43515183	25	0.4673	SMALL-GAIN	FOCAL	5	"ARHGAP27,FMNL1,MAP3K14,PLEKHM1,SPATA32"
TCGA.AA.A00N.01A	17	43334451	43367815	17	0.5168	SMALL-GAIN	FOCAL	2	"MAP3K14,SPATA32"
TCGA.AG.3909.01A	17	43334451	43472805	17	0.6116	SMALL-GAIN	FOCAL	3	"ARHGAP27,MAP3K14,SPATA32"
TCGA.AG.4009.01A	17	43342482	43480040	18	0.385	SMALL-GAIN	FOCAL	2	"ARHGAP27,MAP3K14"
TCGA.AG.A00C.01A	17	43364468	43482243	11	0.4093	SMALL-GAIN	FOCAL	2	"ARHGAP27,MAP3K14"
TCGA.AA.A010.01A	17	43545577	43910760	15	0.4345	SMALL-GAIN	FOCAL	3	"CRHR1,MGC57346-CRHR1,PLEKHM1"
TCGA.AG.4009.01A	17	43884330	44117061	35	0.6536	SMALL-GAIN	FOCAL	6	"CRHR1,KANSL1,MAPT,MGC57346-CRHR1,SPPL2C,STH"
TCGA.AA.3526	17	44157596	44352871	50	0.5408	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.AA.3848	17	44157596	44352871	50	0.5414	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.AA.3870	17	44157596	44352871	50	0.5545	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.CK.4947	17	44162283	44795189	52	0.4074	SMALL-GAIN	FOCAL	6	"ARL17A,ARL17B,KANSL1,LRRC37A,LRRC37A2,NSF"
TCGA.A6.6653	17	44162596	44216321	16	0.5585	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.5M.AATE	17	44165802	44353884	48	0.5895	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.D5.5539	17	44165802	44353884	48	0.63	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.EI.7004	17	44165802	44353884	48	0.6358	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.AA.3517	17	44166454	44219554	14	0.4665	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.AG.3594	17	44166499	44353884	45	0.4361	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.AA.3518	17	44187491	44352871	40	0.4467	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.AA.3529	17	44187491	44352871	41	0.6155	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.A6.6780	17	44208332	44352871	37	0.4652	SMALL-GAIN	FOCAL	1	KANSL1
TCGA.AG.3909.01A	17	44707698	44851007	14	0.4226	SMALL-GAIN	FOCAL	2	"NSF,WNT3"
TCGA.AA.A00N.01A	17	44770230	44806164	7	0.5887	SMALL-GAIN	FOCAL	1	NSF
TCGA.AA.A010.01A	17	44895825	45438695	58	0.4479	SMALL-GAIN	FOCAL	9	"ARL17A,CDC27,EFCAB13,GOSR2,ITGB3,MYL4,RPRML,WNT3,WNT9B"
TCGA.AA.A00A.01A	17	45235523	45376676	21	0.4098	SMALL-GAIN	FOCAL	3	"CDC27,ITGB3,MYL4"
TCGA.AA.A00N.01A	17	45266429	45384796	21	0.6519	SMALL-GAIN	FOCAL	3	"CDC27,ITGB3,MYL4"
TCGA.AG.3909.01A	17	45266429	45384796	20	0.4756	SMALL-GAIN	FOCAL	3	"CDC27,ITGB3,MYL4"
TCGA.AG.A00C.01A	17	45387439	45660058	27	0.4231	SMALL-GAIN	FOCAL	3	"EFCAB13,ITGB3,NPEPPS"
TCGA.AA.A00Q.01A	17	45405633	45759669	42	0.6338	SMALL-GAIN	FOCAL	3	"EFCAB13,KPNB1,NPEPPS"
TCGA.AG.4009.01A	17	45668046	45741476	20	0.5299	SMALL-GAIN	FOCAL	2	"KPNB1,NPEPPS"
TCGA.AG.4009.01A	17	46128454	46474015	27	0.4632	SMALL-GAIN	FOCAL	4	"CBX1,NFE2L1,SKAP1,SNX11"
TCGA.AA.A00N.01A	17	46196023	46474015	14	0.6038	SMALL-GAIN	FOCAL	2	"SKAP1,SNX11"
TCGA.AG.3909.01A	17	46196023	46474015	14	0.4118	SMALL-GAIN	FOCAL	2	"SKAP1,SNX11"
TCGA.CK.5914.01A	17	46196023	46507363	15	0.3847	SMALL-GAIN	FOCAL	2	"SKAP1,SNX11"
TCGA.AG.4009.01A	17	46703078	46847112	7	0.5384	SMALL-GAIN	FOCAL	5	"HOXB13,HOXB9,PRAC1,PRAC2,TTLL6"
TCGA.AG.3909.01A	17	46846333	46871506	8	0.6197	SMALL-GAIN	FOCAL	1	TTLL6
TCGA.AG.3906.01A	17	46846333	47004274	30	0.6542	SMALL-GAIN	FOCAL	4	"ATP5G1,CALCOCO2,TTLL6,UBE2Z"
TCGA.AG.3909.01A	17	46930259	46940158	5	0.4352	SMALL-GAIN	FOCAL	1	CALCOCO2
TCGA.AA.A010.01A	17	47007790	47126659	28	0.4287	SMALL-GAIN	FOCAL	3	"GIP,IGF2BP1,SNF8"
TCGA.AG.3909.01A	17	47038199	47044495	4	0.5321	SMALL-GAIN	FOCAL	1	GIP
TCGA.AA.A010.01A	17	47246884	47590038	30	0.4652	SMALL-GAIN	FOCAL	7	"ABI3,B4GALNT2,GNGT2,NGFR,PHB,PHOSPHO1,ZNF652"
TCGA.AA.A00N.01A	17	47785045	47866104	9	0.6264	SMALL-GAIN	FOCAL	3	"FAM117A,KAT7,SLC35B1"
TCGA.AA.A01Q.01A	17	47785045	47866104	9	0.4292	SMALL-GAIN	FOCAL	3	"FAM117A,KAT7,SLC35B1"
TCGA.CK.5914.01A	17	47886427	47921375	14	0.6007	SMALL-GAIN	FOCAL	2	"KAT7,TAC4"
TCGA.AG.4009.01A	17	48141389	48166432	19	0.3884	SMALL-GAIN	FOCAL	1	ITGA3
TCGA.AG.3906.01A	17	48217440	48356509	39	0.415	SMALL-GAIN	FOCAL	4	"COL1A1,PPP1R9B,SGCA,TMEM92"
TCGA.AG.A016.01A	17	48271262	48445402	24	0.6755	SMALL-GAIN	FOCAL	4	"COL1A1,MRPL27,TMEM92,XYLT2"
TCGA.AG.4009.01A	17	48445402	48474547	18	0.4228	SMALL-GAIN	FOCAL	3	"EME1,LRRC59,MRPL27"
TCGA.AG.A016.01A	17	48538554	48618833	46	0.5194	SMALL-GAIN	FOCAL	5	"ACSF2,CHAD,EPN3,MYCBPAP,RSAD1"
TCGA.AA.A00D.01A	17	48602186	48627837	19	0.4656	SMALL-GAIN	FOCAL	3	"EPN3,MYCBPAP,SPATA20"
TCGA.AG.4009.01A	17	48649898	48762041	47	0.5993	SMALL-GAIN	FOCAL	2	"ABCC3,CACNA1G"
TCGA.CK.5914.01A	17	48733156	48764850	25	0.5047	SMALL-GAIN	FOCAL	1	ABCC3
TCGA.AA.A00D.01A	17	48757112	48814278	13	0.5229	SMALL-GAIN	FOCAL	3	"ABCC3,ANKRD40,LUC7L3"
TCGA.AA.A00Q.01A	17	48768436	48814278	8	0.4408	SMALL-GAIN	FOCAL	3	"ABCC3,ANKRD40,LUC7L3"
TCGA.DC.6682	17	50407776	50597544	68	0.465	SMALL-GAIN	FOCAL	0	None
TCGA.AY.A8YK	17	52772782	53831103	446	0.3823	SMALL-GAIN	FOCAL	7	"COX11,HLF,MMD,PCTP,STXBP4,TMEM100,TOM1L1"
TCGA.AF.2689	17	52964056	53522431	202	0.3957	SMALL-GAIN	FOCAL	5	"COX11,HLF,MMD,STXBP4,TOM1L1"
TCGA.AA.3509.01A	17	53038559	53237121	22	0.5592	SMALL-GAIN	FOCAL	3	"COX11,STXBP4,TOM1L1"
TCGA.AZ.4684.01A	17	53038559	53237121	22	0.6017	SMALL-GAIN	FOCAL	3	"COX11,STXBP4,TOM1L1"
TCGA.CK.5914.01A	17	53498975	54559677	25	0.5287	SMALL-GAIN	FOCAL	4	"ANKFN1,MMD,PCTP,TMEM100"
TCGA.AG.4009.01A	17	54969022	54985775	7	0.6374	SMALL-GAIN	FOCAL	1	TRIM25
TCGA.AG.3906.01A	17	56082759	56320277	33	0.3811	SMALL-GAIN	FOCAL	7	"DYNLL2,EPX,LPO,MKS1,OR4D1,OR4D2,SRSF1"
TCGA.AA.A010.01A	17	56232485	56357717	49	0.6703	SMALL-GAIN	FOCAL	6	"EPX,LPO,MKS1,MPO,OR4D1,OR4D2"
TCGA.AG.3909.01A	17	56246996	56283385	12	0.4815	SMALL-GAIN	FOCAL	3	"EPX,MKS1,OR4D2"
TCGA.AG.4009.01A	17	56246996	56327734	30	0.4887	SMALL-GAIN	FOCAL	4	"EPX,LPO,MKS1,OR4D2"
TCGA.AA.A00L.01A	17	56408575	56619128	48	0.632	SMALL-GAIN	FOCAL	6	"C17orf47,HSF5,MTMR4,RNF43,SEPT4,SUPT4H1"
TCGA.AG.A00C.01A	17	56557357	56603992	27	0.6035	SMALL-GAIN	FOCAL	3	"HSF5,MTMR4,SEPT4"
TCGA.AG.4009.01A	17	56634293	57350965	104	0.3954	SMALL-GAIN	FOCAL	8	"GDPD1,PPM1E,PRR11,RAD51C,SKA2,SMG8,TEX14,TRIM37"
TCGA.AG.3906.01A	17	56636767	57232289	79	0.4058	SMALL-GAIN	FOCAL	5	"PPM1E,RAD51C,SKA2,TEX14,TRIM37"
TCGA.CK.5914.01A	17	56661834	56700161	17	0.5361	SMALL-GAIN	FOCAL	1	TEX14
TCGA.AG.A00C.01A	17	57189571	57311794	21	0.5137	SMALL-GAIN	FOCAL	4	"GDPD1,PRR11,SKA2,SMG8"
TCGA.AG.3906.01A	17	57322725	57474425	12	0.6503	SMALL-GAIN	FOCAL	2	"GDPD1,YPEL2"
TCGA.CK.5914.01A	17	57697413	57842285	35	0.4283	SMALL-GAIN	FOCAL	3	"CLTC,PTRH2,VMP1"
TCGA.AA.A00N.01A	17	57697413	57918562	42	0.5953	SMALL-GAIN	FOCAL	3	"CLTC,PTRH2,VMP1"
TCGA.AA.A010.01A	17	57758661	58003744	36	0.5549	SMALL-GAIN	FOCAL	5	"CLTC,PTRH2,RPS6KB1,TUBD1,VMP1"
TCGA.CK.5914.01A	17	57991929	58024904	12	0.3981	SMALL-GAIN	FOCAL	1	RPS6KB1
TCGA.CK.5914.01A	17	58290885	58603108	36	0.4064	SMALL-GAIN	FOCAL	3	"APPBP2,C17orf64,USP32"
TCGA.AF.2689	17	59129883	59154934	5	0.6625	SMALL-GAIN	FOCAL	1	BCAS3
TCGA.AA.A010.01A	17	59557424	60061985	61	0.5962	SMALL-GAIN	FOCAL	5	"BRIP1,INTS2,MED13,NACA2,TBX4"
TCGA.AA.3982	17	59938735	60999051	145	0.4765	SMALL-GAIN	FOCAL	8	"BRIP1,EFCAB3,INTS2,MARCH10,MED13,METTL2A,MRC2,TLK2"
TCGA.AA.A00N.01A	17	60142437	60663465	37	0.4322	SMALL-GAIN	FOCAL	4	"EFCAB3,MED13,METTL2A,TLK2"
TCGA.AG.3909.01A	17	60460273	60525906	18	0.4637	SMALL-GAIN	FOCAL	2	"EFCAB3,METTL2A"
TCGA.AA.A00L.01A	17	60501242	60525906	7	0.6247	SMALL-GAIN	FOCAL	1	METTL2A
TCGA.CA.5254	17	60535076	61232477	104	0.581	SMALL-GAIN	FOCAL	4	"MARCH10,MRC2,TANC2,TLK2"
TCGA.AA.A00L.01A	17	60689706	61660831	85	0.608	SMALL-GAIN	FOCAL	8	"ACE,CYB561,DCAF7,KCNH6,MARCH10,MRC2,TANC2,TLK2"
TCGA.AM.5820	17	61555665	61622702	19	0.6155	SMALL-GAIN	FOCAL	2	"ACE,KCNH6"
TCGA.AG.3891.01A	17	61559779	61564293	8	0.6649	SMALL-GAIN	FOCAL	1	ACE
TCGA.AG.3909.01A	17	61561684	61564293	5	0.4776	SMALL-GAIN	FOCAL	1	ACE
TCGA.AG.3906.01A	17	61565971	61681872	28	0.4926	SMALL-GAIN	FOCAL	4	"ACE,DCAF7,KCNH6,TACO1"
TCGA.AG.4009.01A	17	61621331	61666334	10	0.525	SMALL-GAIN	FOCAL	2	"DCAF7,KCNH6"
TCGA.CK.5914.01A	17	61627992	61678406	8	0.6448	SMALL-GAIN	FOCAL	2	"DCAF7,TACO1"
TCGA.AG.3909.01A	17	61710024	61769552	15	0.4504	SMALL-GAIN	FOCAL	1	MAP3K3
TCGA.AA.A00L.01A	17	61759096	61790719	18	0.6391	SMALL-GAIN	FOCAL	3	"LIMD2,MAP3K3,STRADA"
TCGA.AG.A00C.01A	17	61775862	61843235	23	0.4909	SMALL-GAIN	FOCAL	3	"CCDC47,LIMD2,STRADA"
TCGA.AG.4009.01A	17	61800571	61877816	19	0.3909	SMALL-GAIN	FOCAL	3	"CCDC47,DDX42,STRADA"
TCGA.AA.A00N.01A	17	61949447	61958667	7	0.6508	SMALL-GAIN	FOCAL	2	"CSH2,GH2"
TCGA.CK.5914.01A	17	61949447	61959060	8	0.6116	SMALL-GAIN	FOCAL	2	"CSH2,GH2"
TCGA.AA.A00N.01A	17	62006539	62009487	5	0.6234	SMALL-GAIN	FOCAL	1	CD79B
TCGA.CK.5914.01A	17	62007160	62009487	4	0.4284	SMALL-GAIN	FOCAL	1	CD79B
TCGA.AG.A016.01A	17	62018100	62137789	33	0.3913	SMALL-GAIN	FOCAL	4	"ERN1,ICAM2,PRR29,SCN4A"
TCGA.AG.3909.01A	17	62083925	62473891	39	0.4356	SMALL-GAIN	FOCAL	5	"ERN1,ICAM2,MILR1,PECAM1,TEX2"
TCGA.AA.A00N.01A	17	62121306	62463612	38	0.549	SMALL-GAIN	FOCAL	4	"ERN1,MILR1,PECAM1,TEX2"
TCGA.AA.3968	17	62169244	62409585	72	0.47	SMALL-GAIN	FOCAL	3	"ERN1,PECAM1,TEX2"
TCGA.AG.A00C.01A	17	62476359	62510325	16	0.6368	SMALL-GAIN	FOCAL	3	"CEP95,DDX5,POLG2"
TCGA.AA.A00N.01A	17	62527968	62602640	24	0.5753	SMALL-GAIN	FOCAL	2	"CEP95,SMURF2"
TCGA.AG.A016.01A	17	62527968	62602640	24	0.5782	SMALL-GAIN	FOCAL	2	"CEP95,SMURF2"
TCGA.AA.A010.01A	17	62541938	62558846	9	0.6238	SMALL-GAIN	FOCAL	1	SMURF2
TCGA.AG.A00C.01A	17	62602640	62892820	14	0.5841	SMALL-GAIN	FOCAL	2	"LRRC37A3,SMURF2"
TCGA.AG.3909.01A	17	62891004	63223346	28	0.418	SMALL-GAIN	FOCAL	3	"GNA13,LRRC37A3,RGS9"
TCGA.AA.A00L.01A	17	63049620	64065979	33	0.6546	SMALL-GAIN	FOCAL	4	"AXIN2,CEP112,GNA13,RGS9"
TCGA.EF.5830	17	63252029	63541496	111	0.6491	SMALL-GAIN	FOCAL	1	AXIN2
TCGA.AA.3982	17	63341663	63698527	125	0.4969	SMALL-GAIN	FOCAL	2	"AXIN2,CEP112"
TCGA.AA.3867	17	63408151	63650996	75	0.5784	SMALL-GAIN	FOCAL	2	"AXIN2,CEP112"
TCGA.AG.3575	17	64053231	64820665	284	0.4478	SMALL-GAIN	FOCAL	3	"APOH,CEP112,PRKCA"
TCGA.AA.A00L.01A	17	64298923	64641474	5	0.4889	SMALL-GAIN	FOCAL	1	PRKCA
TCGA.AG.A01W.01A	17	64413742	64440856	13	0.5161	SMALL-GAIN	FOCAL	1	PRKCA
TCGA.AG.A01W.01A	17	64519675	64557011	21	0.5011	SMALL-GAIN	FOCAL	1	PRKCA
TCGA.AA.A00L.01A	17	64880605	65163567	18	0.4558	SMALL-GAIN	FOCAL	4	"CACNG1,CACNG4,CACNG5,HELZ"
TCGA.AA.A00D.01A	17	65103294	65962632	60	0.5842	SMALL-GAIN	FOCAL	5	"BPTF,HELZ,NOL11,PITPNC1,PSMD12"
TCGA.AF.2689	17	65747144	66368183	119	0.5831	SMALL-GAIN	FOCAL	6	"AMZ2,ARSG,BPTF,C17orf58,KPNA2,SLC16A6"
TCGA.AG.A00C.01A	17	65987979	66303598	21	0.5241	SMALL-GAIN	FOCAL	5	"AMZ2,ARSG,C17orf58,KPNA2,SLC16A6"
TCGA.AG.3909.01A	17	66339726	66432481	20	0.6674	SMALL-GAIN	FOCAL	3	"ARSG,PRKAR1A,WIPI1"
TCGA.AA.A010.01A	17	66339726	66453426	24	0.6126	SMALL-GAIN	FOCAL	3	"ARSG,PRKAR1A,WIPI1"
TCGA.AA.A00D.01A	17	66420554	66449031	12	0.4141	SMALL-GAIN	FOCAL	2	"PRKAR1A,WIPI1"
TCGA.AG.3909.01A	17	66535970	67151128	124	0.4114	SMALL-GAIN	FOCAL	6	"ABCA10,ABCA6,ABCA8,ABCA9,FAM20A,PRKAR1A"
TCGA.AA.3509.01A	17	66864186	67252251	148	0.3894	SMALL-GAIN	FOCAL	5	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9"
TCGA.AZ.4684.01A	17	66864186	67252251	148	0.439	SMALL-GAIN	FOCAL	5	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9"
TCGA.AA.A02H.01A	17	66913446	66980972	19	0.4051	SMALL-GAIN	FOCAL	2	"ABCA8,ABCA9"
TCGA.AA.A02E.01A	17	66979819	66982253	4	0.5281	SMALL-GAIN	FOCAL	1	ABCA9
TCGA.DM.A28M.01A	17	67221381	67285974	26	0.5924	SMALL-GAIN	FOCAL	2	"ABCA10,ABCA5"
TCGA.AG.3909.01A	17	67243631	67282317	22	0.4129	SMALL-GAIN	FOCAL	1	ABCA5
TCGA.AA.A00N.01A	17	67285286	67293290	5	0.3844	SMALL-GAIN	FOCAL	1	ABCA5
TCGA.AA.A01C.01A	17	67285974	67309191	11	0.5565	SMALL-GAIN	FOCAL	1	ABCA5
TCGA.AA.A01I.01A	17	67297278	67309191	7	0.5756	SMALL-GAIN	FOCAL	1	ABCA5
TCGA.AG.3909.01A	17	67411036	68130460	14	0.4769	SMALL-GAIN	FOCAL	2	"KCNJ16,MAP2K6"
TCGA.DC.6682	17	67552889	67728702	39	0.5053	SMALL-GAIN	FOCAL	0	None
TCGA.DC.6682	17	68010957	68182858	67	0.5412	SMALL-GAIN	FOCAL	2	"KCNJ16,KCNJ2"
TCGA.CM.6166	17	68416996	68532611	28	0.437	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01Z	17	68647820	68682719	17	0.5718	SMALL-GAIN	FOCAL	0	None
TCGA.CM.6166	17	69050148	69616365	257	0.4536	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	17	70362789	70384041	15	0.534	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	17	70645271	71165407	8	0.4973	SMALL-GAIN	FOCAL	2	"SLC39A11,SSTR2"
TCGA.AA.A010.01A	17	70732727	71165407	7	0.5589	SMALL-GAIN	FOCAL	2	"SLC39A11,SSTR2"
TCGA.AG.A01W.01A	17	70998675	71031901	34	0.4359	SMALL-GAIN	FOCAL	1	SLC39A11
TCGA.AG.A00C.01A	17	71165407	71241219	22	0.4035	SMALL-GAIN	FOCAL	4	"C17orf80,COG1,FAM104A,SSTR2"
TCGA.AG.4009.01A	17	71223255	71433832	35	0.6637	SMALL-GAIN	FOCAL	5	"C17orf80,CDC42EP4,CPSF4L,FAM104A,SDK2"
TCGA.AG.A01W.01A	17	71258350	71321389	18	0.4864	SMALL-GAIN	FOCAL	1	CDC42EP4
TCGA.AG.3909.01A	17	71334788	72310226	60	0.5398	SMALL-GAIN	FOCAL	5	"DNAI2,LOC100134391,RPL38,SDK2,TTYH2"
TCGA.AM.5821	17	71737391	71752085	14	0.4749	SMALL-GAIN	FOCAL	1	LOC100134391
TCGA.AG.4009.01A	17	72226980	72310226	24	0.6225	SMALL-GAIN	FOCAL	2	"DNAI2,TTYH2"
TCGA.AA.A010.01A	17	72239463	72337968	25	0.3986	SMALL-GAIN	FOCAL	3	"DNAI2,KIF19,TTYH2"
TCGA.AG.4009.01A	17	72469635	72733102	32	0.5598	SMALL-GAIN	FOCAL	8	"C17orf77,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,RAB37"
TCGA.AA.A01Q.01A	17	72608745	72733102	15	0.4063	SMALL-GAIN	FOCAL	3	"CD300E,CD300LF,RAB37"
TCGA.AG.3906.01A	17	72758134	72815834	17	0.3878	SMALL-GAIN	FOCAL	3	"NAT9,SLC9A3R1,TMEM104"
TCGA.AA.A00L.01A	17	72832028	72949083	39	0.5051	SMALL-GAIN	FOCAL	8	"FADS6,FDXR,GRIN2C,HID1,OTOP2,OTOP3,TMEM104,USH1G"
TCGA.AG.3891.01A	17	72840365	72888599	22	0.5647	SMALL-GAIN	FOCAL	3	"FADS6,FDXR,GRIN2C"
TCGA.AG.3906.01A	17	72914073	73016368	30	0.4369	SMALL-GAIN	FOCAL	6	"CDR2L,HID1,ICT1,OTOP2,OTOP3,USH1G"
TCGA.AG.3906.01A	17	73059026	73242526	46	0.4784	SMALL-GAIN	FOCAL	8	"ARMC7,GGA3,HN1,KCTD2,NT5C,NUP85,SLC16A5,SUMO2"
TCGA.AG.4009.01A	17	73204571	73242526	28	0.5944	SMALL-GAIN	FOCAL	2	"GGA3,NUP85"
TCGA.AA.A010.01A	17	73316411	73481900	8	0.6257	SMALL-GAIN	FOCAL	2	"GRB2,KIAA0195"
TCGA.AG.4009.01A	17	73316411	73489524	20	0.609	SMALL-GAIN	FOCAL	2	"GRB2,KIAA0195"
TCGA.AA.A00L.01A	17	73484792	73646668	55	0.5832	SMALL-GAIN	FOCAL	7	"CASKIN2,KIAA0195,LLGL2,RECQL5,SMIM5,SMIM6,TSEN54"
TCGA.AG.4009.01A	17	73565111	73702093	34	0.5247	SMALL-GAIN	FOCAL	5	"LLGL2,RECQL5,SAP30BP,SMIM5,SMIM6"
TCGA.AG.3909.01A	17	73646668	73702400	19	0.4953	SMALL-GAIN	FOCAL	2	"RECQL5,SAP30BP"
TCGA.AG.3906.01A	17	73647202	73702093	17	0.6179	SMALL-GAIN	FOCAL	2	"RECQL5,SAP30BP"
TCGA.AA.A00L.01A	17	73702093	73836810	45	0.6284	SMALL-GAIN	FOCAL	6	"GALK1,H3F3B,ITGB4,SAP30BP,UNC13D,UNK"
TCGA.AG.4009.01A	17	73780622	73851251	28	0.5329	SMALL-GAIN	FOCAL	3	"UNC13D,UNK,WBP2"
TCGA.AA.A00L.01A	17	73851251	73897756	13	0.472	SMALL-GAIN	FOCAL	4	"MRPL38,TRIM47,TRIM65,WBP2"
TCGA.AG.3891.01A	17	73922060	73953493	16	0.5976	SMALL-GAIN	FOCAL	2	"ACOX1,FBF1"
TCGA.AA.A010.01A	17	73946823	73975004	10	0.4888	SMALL-GAIN	FOCAL	1	ACOX1
TCGA.AA.A010.01A	17	74003156	74023132	14	0.4162	SMALL-GAIN	FOCAL	1	EVPL
TCGA.AA.A00L.01A	17	74010959	74020053	9	0.4048	SMALL-GAIN	FOCAL	1	EVPL
TCGA.AG.3891.01A	17	74035776	74066394	15	0.556	SMALL-GAIN	FOCAL	1	SRP68
TCGA.AA.A010.01A	17	74569258	74673633	13	0.5249	SMALL-GAIN	FOCAL	3	"MXRA7,ST6GALNAC1,ST6GALNAC2"
TCGA.AG.3906.01A	17	74673633	74901200	32	0.6735	SMALL-GAIN	FOCAL	6	"JMJD6,METTL23,MFSD11,MGAT5B,MXRA7,SRSF2"
TCGA.AG.3909.01A	17	74750108	74928710	15	0.4235	SMALL-GAIN	FOCAL	2	"MFSD11,MGAT5B"
TCGA.AA.A010.01A	17	74898620	75209962	29	0.5584	SMALL-GAIN	FOCAL	2	"MGAT5B,SEC14L1"
TCGA.AA.A010.01A	17	75877986	76082932	15	0.6164	SMALL-GAIN	FOCAL	1	TNRC6C
TCGA.AA.3819	17	76061565	76199719	34	0.4926	SMALL-GAIN	FOCAL	7	"AFMID,C17orf99,SYNGR2,TK1,TMC6,TMC8,TNRC6C"
TCGA.AG.A008.01A	17	76449377	76456194	7	0.3909	SMALL-GAIN	FOCAL	1	DNAH17
TCGA.AA.A010.01A	17	76480913	76723666	56	0.5641	SMALL-GAIN	FOCAL	2	"CYTH1,DNAH17"
TCGA.AG.3909.01A	17	76495042	76528532	16	0.4318	SMALL-GAIN	FOCAL	1	DNAH17
TCGA.AG.A01W.01A	17	76545971	76787760	48	0.5975	SMALL-GAIN	FOCAL	2	"CYTH1,DNAH17"
TCGA.A6.3808.01A	17	76568731	77043569	57	0.3795	SMALL-GAIN	FOCAL	8	"C1QTNF1,CANT1,CEP295NL,CYTH1,DNAH17,LGALS3BP,TIMP2,USP36"
TCGA.AG.A01W.01A	17	77262985	77385662	24	0.5373	SMALL-GAIN	FOCAL	1	RBFOX3
TCGA.AD.6965	17	77793859	77833654	14	0.4357	SMALL-GAIN	FOCAL	1	CBX4
TCGA.AD.6965	17	77849495	77891368	24	0.5177	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	17	77921393	78282770	90	0.3904	SMALL-GAIN	FOCAL	8	"CARD14,CCDC40,EIF4A3,GAA,RNF213,SGSH,SLC26A11,TBC1D16"
TCGA.AA.A010.01A	17	78120551	78195341	29	0.4161	SMALL-GAIN	FOCAL	4	"CARD14,EIF4A3,SGSH,SLC26A11"
TCGA.AG.4009.01A	17	78220321	78831538	84	0.4112	SMALL-GAIN	FOCAL	5	"ENDOV,NPTX1,RNF213,RPTOR,SLC26A11"
TCGA.AA.A010.01A	17	78348206	78367118	18	0.3856	SMALL-GAIN	FOCAL	1	RNF213
TCGA.CM.6166	17	78581449	79001299	143	0.4015	SMALL-GAIN	FOCAL	2	"CHMP6,RPTOR"
TCGA.DT.5265	17	78642619	78864748	77	0.4964	SMALL-GAIN	FOCAL	1	RPTOR
TCGA.AY.A8YK	17	78678978	78925949	85	0.4059	SMALL-GAIN	FOCAL	1	RPTOR
TCGA.AA.A00L.01A	17	78831538	79233990	61	0.5081	SMALL-GAIN	FOCAL	8	"AATK,BAIAP2,C17orf89,CEP131,CHMP6,ENTHD2,RPTOR,SLC38A10"
TCGA.AA.3979	17	78910628	79044283	26	0.6257	SMALL-GAIN	FOCAL	3	"BAIAP2,CHMP6,RPTOR"
TCGA.AY.A8YK	17	80117219	80379331	24	0.4657	SMALL-GAIN	FOCAL	9	"CCDC57,CD7,CSNK1D,HEXDC,OGFOD3,SECTM1,SLC16A3,TEX19,UTS2R"
TCGA.AA.3979	17	80421138	80571059	29	0.5303	SMALL-GAIN	FOCAL	2	"FOXK2,NARF"
TCGA.AY.A8YK	17	80439732	81048658	137	0.3857	SMALL-GAIN	FOCAL	10	"B3GNTL1,FN3K,FN3KRP,FOXK2,METRNL,NARF,RAB40B,TBCD,WDR45B,ZNF750"
TCGA.AA.3982	18	100948	195404	8	0.5237	SMALL-GAIN	FOCAL	1	USP14
TCGA.DM.A1D4	18	100948	1585585	561	0.4558	SMALL-GAIN	FOCAL	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.A00N.01A	18	163296	246296	24	0.4073	SMALL-GAIN	FOCAL	2	"THOC1,USP14"
TCGA.AA.A00N.01A	18	712308	2656056	38	0.3816	SMALL-GAIN	FOCAL	6	"ADCYAP1,ENOSF1,METTL4,NDC80,SMCHD1,YES1"
TCGA.AA.A010.01A	18	751653	2601343	25	0.608	SMALL-GAIN	FOCAL	4	"ADCYAP1,METTL4,NDC80,YES1"
TCGA.D5.6922	18	1722426	1841468	50	0.6654	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A1D4	18	1748721	4488933	1168	0.466	SMALL-GAIN	FOCAL	10	"DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1"
TCGA.AA.A00N.01A	18	2775695	2802437	7	0.469	SMALL-GAIN	FOCAL	1	SMCHD1
TCGA.AA.A00N.01A	18	2931214	3214920	43	0.6072	SMALL-GAIN	FOCAL	2	"LPIN2,MYOM1"
TCGA.AA.A010.01A	18	3067208	3214920	34	0.6223	SMALL-GAIN	FOCAL	1	MYOM1
TCGA.AA.A010.01A	18	5956188	6973006	51	0.3813	SMALL-GAIN	FOCAL	3	"ARHGAP28,L3MBTL4,LAMA1"
TCGA.AA.3850	18	6877191	7466109	280	0.38915	SMALL-GAIN	FOCAL	3	"ARHGAP28,LAMA1,LRRC30"
TCGA.A6.5662	18	7062456	7831264	300	0.4502	SMALL-GAIN	FOCAL	3	"LAMA1,LRRC30,PTPRM"
TCGA.AG.3728	18	8044420	8581422	280	0.4118	SMALL-GAIN	FOCAL	1	PTPRM
TCGA.AG.3728	18	8587108	10029870	609	0.3893	SMALL-GAIN	FOCAL	10	"ANKRD12,MTCL1,NDUFV2,PPP4R1,RAB12,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.AA.A00N.01A	18	9182378	9258792	11	0.6505	SMALL-GAIN	FOCAL	1	ANKRD12
TCGA.AA.3509.01A	18	9204420	9258792	9	0.5301	SMALL-GAIN	FOCAL	1	ANKRD12
TCGA.AA.A010.01A	18	9708336	9859173	7	0.6097	SMALL-GAIN	FOCAL	1	RAB31
TCGA.AG.3909.01A	18	9815075	9886559	5	0.452	SMALL-GAIN	FOCAL	2	"RAB31,TXNDC2"
TCGA.A6.5662	18	9946404	10547299	357	0.5709	SMALL-GAIN	FOCAL	3	"APCDD1,NAPG,VAPA"
TCGA.AA.3870	18	10133178	12046965	844	0.6399	SMALL-GAIN	FOCAL	8	"APCDD1,CHMP1B,GNAL,IMPA2,MPPE1,NAPG,PIEZO2,SLC35G4"
TCGA.AA.A010.01A	18	12686242	12725387	15	0.4583	SMALL-GAIN	FOCAL	2	"CEP76,PSMG2"
TCGA.AA.A00N.01A	18	13029635	13068810	14	0.607	SMALL-GAIN	FOCAL	1	CEP192
TCGA.AG.3885	18	13572353	14744694	260	0.4061	SMALL-GAIN	FOCAL	7	"FAM210A,LDLRAD4,MC2R,MC5R,POTEC,RNMT,ZNF519"
TCGA.DT.5265	18	14715282	14938838	31	0.4694	SMALL-GAIN	FOCAL	1	ANKRD30B
TCGA.AA.3850	18	18560353	19953906	216	0.38025	SMALL-GAIN	FOCAL	7	"ABHD3,ESCO1,GATA6,GREB1L,MIB1,ROCK1,SNRPD1"
TCGA.AF.3914.01A	18	19110255	20936496	83	0.4445	SMALL-GAIN	FOCAL	9	"ABHD3,CABLES1,CTAGE1,ESCO1,GATA6,MIB1,RBBP8,SNRPD1,TMEM241"
TCGA.AA.3666	18	19517134	19557091	11	0.4451	SMALL-GAIN	FOCAL	0	None
TCGA.A6.6649	18	20264340	20618211	60	0.5756	SMALL-GAIN	FOCAL	1	RBBP8
TCGA.AG.3891.01A	18	21192016	21209780	3	0.5142	SMALL-GAIN	FOCAL	1	ANKRD29
TCGA.AA.A00N.01A	18	21338313	21698047	74	0.6485	SMALL-GAIN	FOCAL	2	"LAMA3,TTC39C"
TCGA.AA.A00L.01A	18	21452969	22040643	89	0.6148	SMALL-GAIN	FOCAL	6	"CABYR,HRH4,IMPACT,LAMA3,OSBPL1A,TTC39C"
TCGA.AF.3914.01A	18	21469933	21483848	8	0.4065	SMALL-GAIN	FOCAL	1	LAMA3
TCGA.AA.A00D.01A	18	21948197	22030681	12	0.6305	SMALL-GAIN	FOCAL	2	"IMPACT,OSBPL1A"
TCGA.AA.A00N.01A	18	22040643	24128325	48	0.3986	SMALL-GAIN	FOCAL	6	"HRH4,KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AA.3681	18	22076753	27832665	1867	0.6568	SMALL-GAIN	FOCAL	8	"AQP4,CDH2,CHST9,KCTD1,PSMA8,SS18,TAF4B,ZNF521"
TCGA.AG.3728	18	23286019	23307760	7	0.3811	SMALL-GAIN	FOCAL	0	None
TCGA.EI.6881	18	23551605	26529680	893	0.6542	SMALL-GAIN	FOCAL	7	"AQP4,CDH2,CHST9,KCTD1,PSMA8,SS18,TAF4B"
TCGA.DT.5265	18	24979240	25390441	149	0.4365	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3681	18	27881855	28560706	233	0.6001	SMALL-GAIN	FOCAL	0	None
TCGA.G4.6306	18	28143118	28311297	51	0.4235	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3811	18	28610505	28627637	10	0.4225	SMALL-GAIN	FOCAL	1	DSC3
TCGA.AA.A00N.01A	18	28714515	29205528	78	0.675	SMALL-GAIN	FOCAL	7	"B4GALT6,DSC1,DSG1,DSG2,DSG3,DSG4,TTR"
TCGA.AA.3681	18	28872652	28949851	35	0.5387	SMALL-GAIN	FOCAL	1	DSG1
TCGA.AA.A010.01A	18	29339799	29890109	60	0.5246	SMALL-GAIN	FOCAL	6	"GAREM,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8"
TCGA.AA.A00N.01A	18	29410730	29496213	25	0.4207	SMALL-GAIN	FOCAL	1	TRAPPC8
TCGA.DT.5265	18	35637843	36884203	414	0.4074	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00L.01A	18	37202036	39660995	26	0.5781	SMALL-GAIN	FOCAL	1	PIK3C3
TCGA.D5.6922	18	39898497	41687159	525	0.6299	SMALL-GAIN	FOCAL	2	"RIT2,SYT4"
TCGA.DT.5265	18	40039036	40182887	44	0.5106	SMALL-GAIN	FOCAL	0	None
TCGA.DT.5265	18	41813490	42677599	290	0.4003	SMALL-GAIN	FOCAL	1	SETBP1
TCGA.AA.A010.01A	18	43204592	43420090	32	0.4364	SMALL-GAIN	FOCAL	3	"SIGLEC15,SLC14A1,SLC14A2"
TCGA.AA.A010.01A	18	43458280	44444083	140	0.5245	SMALL-GAIN	FOCAL	9	"ATP5A1,C18orf25,EPG5,HAUS1,LOXHD1,PIAS2,PSTPIP2,RNF165,ST8SIA5"
TCGA.AA.A00N.01A	18	43459993	43652040	45	0.6042	SMALL-GAIN	FOCAL	2	"EPG5,PSTPIP2"
TCGA.AA.A00K.01A	18	43674962	43914212	12	0.5059	SMALL-GAIN	FOCAL	4	"ATP5A1,C18orf25,HAUS1,RNF165"
TCGA.AA.A01Q.01A	18	44137272	44236850	15	0.5305	SMALL-GAIN	FOCAL	1	LOXHD1
TCGA.AA.3509.01A	18	45371987	45395594	6	0.3999	SMALL-GAIN	FOCAL	1	SMAD2
TCGA.AZ.4684.01A	18	45371987	45395594	6	0.6055	SMALL-GAIN	FOCAL	1	SMAD2
TCGA.D5.6929	18	45825577	46018246	97	0.468	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00K.01A	18	46468798	47753730	45	0.3865	SMALL-GAIN	FOCAL	9	"ACAA2,C18orf32,CFAP53,DYM,LIPG,MYO5B,RPL17,RPL17-C18orf32,SMAD7"
TCGA.D5.6929	18	47213086	47324280	32	0.6502	SMALL-GAIN	FOCAL	1	ACAA2
TCGA.AA.A010.01A	18	47369563	47566464	32	0.4946	SMALL-GAIN	FOCAL	1	MYO5B
TCGA.AA.A010.01A	18	47792643	48190297	27	0.5759	SMALL-GAIN	FOCAL	5	"CFAP53,CXXC1,MAPK4,MBD1,SKA1"
TCGA.AA.A00D.01A	18	51800249	51904483	21	0.5107	SMALL-GAIN	FOCAL	3	"C18orf54,POLI,STARD6"
TCGA.AZ.4684.01A	18	51809180	52571521	27	0.3929	SMALL-GAIN	FOCAL	6	"C18orf54,CCDC68,DYNAP,POLI,RAB27B,STARD6"
TCGA.AA.A00N.01A	18	51900543	55020041	75	0.4977	SMALL-GAIN	FOCAL	9	"BOD1L2,C18orf54,CCDC68,DYNAP,RAB27B,ST8SIA3,TCF4,TXNL1,WDR7"
TCGA.CK.5914.01A	18	52895409	53128201	15	0.5071	SMALL-GAIN	FOCAL	1	TCF4
TCGA.AA.A00N.01A	18	55102942	55238587	10	0.3881	SMALL-GAIN	FOCAL	2	"FECH,ONECUT2"
TCGA.AA.3850	18	55122774	55145506	19	0.50035	SMALL-GAIN	FOCAL	1	ONECUT2
TCGA.AA.A010.01A	18	55338659	55832959	17	0.6032	SMALL-GAIN	FOCAL	2	"ATP8B1,NEDD4L"
TCGA.AZ.4684.01A	18	56376604	56383082	5	0.4231	SMALL-GAIN	FOCAL	1	MALT1
TCGA.AA.A00N.01A	18	57026242	59965967	78	0.6664	SMALL-GAIN	FOCAL	8	"CCBE1,CDH20,KIAA1468,LMAN1,MC4R,PIGN,PMAIP1,RNF152"
TCGA.CK.5914.01A	18	59878333	59972641	25	0.4202	SMALL-GAIN	FOCAL	1	KIAA1468
TCGA.AA.A010.01A	18	60237289	60795829	22	0.4659	SMALL-GAIN	FOCAL	3	"BCL2,PHLPP1,ZCCHC2"
TCGA.DT.5265	18	60522724	60604574	17	0.5925	SMALL-GAIN	FOCAL	1	PHLPP1
TCGA.AA.3850	18	61251443	61272888	7	0.64165	SMALL-GAIN	FOCAL	1	SERPINB13
TCGA.CK.5914.01A	18	61264231	61379759	19	0.4026	SMALL-GAIN	FOCAL	4	"SERPINB11,SERPINB13,SERPINB3,SERPINB4"
TCGA.AA.A00N.01A	18	61310326	61575173	31	0.5559	SMALL-GAIN	FOCAL	5	"SERPINB11,SERPINB2,SERPINB3,SERPINB4,SERPINB7"
TCGA.DT.5265	18	61791914	62397460	215	0.4646	SMALL-GAIN	FOCAL	0	None
TCGA.DT.5265	18	63331808	66270695	1060	0.4524	SMALL-GAIN	FOCAL	3	"CDH19,CDH7,DSEL"
TCGA.CI.6621	18	63679197	67914769	1490	0.4639	SMALL-GAIN	FOCAL	7	"CCDC102B,CD226,CDH19,DOK6,DSEL,RTTN,TMX3"
TCGA.AG.3731	18	65906071	65924001	7	0.6632	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	18	66382094	67860473	64	0.5859	SMALL-GAIN	FOCAL	5	"CCDC102B,CD226,DOK6,RTTN,TMX3"
TCGA.DT.5265	18	67333978	70100131	1001	0.4598	SMALL-GAIN	FOCAL	5	"CD226,DOK6,GTSCR1,RTTN,SOCS6"
TCGA.AA.3930.01A	18	71920761	71923984	3	0.5577	SMALL-GAIN	FOCAL	1	CYB5A
TCGA.AA.3850	18	72022670	72254736	145	0.42365	SMALL-GAIN	FOCAL	4	"C18orf63,CNDP1,CNDP2,FAM69C"
TCGA.F5.6814	18	72874303	72990272	70	0.3807	SMALL-GAIN	FOCAL	2	"TSHZ1,ZADH2"
TCGA.AA.A00A.01A	18	72997447	73139339	6	0.6045	SMALL-GAIN	FOCAL	2	"SMIM21,TSHZ1"
TCGA.AG.3893	18	73875152	74170188	100	0.6748	SMALL-GAIN	FOCAL	1	ZNF516
TCGA.AA.A010.01A	18	74563679	74962468	38	0.6187	SMALL-GAIN	FOCAL	3	"GALR1,MBP,ZNF236"
TCGA.AA.A01Q.01A	19	281360	307102	7	0.6312	SMALL-GAIN	FOCAL	2	"MIER2,PPAP2C"
TCGA.AM.5820	19	292582	390340	21	0.4855	SMALL-GAIN	FOCAL	2	"MIER2,THEG"
TCGA.AA.A01Q.01A	19	362152	613231	32	0.495	SMALL-GAIN	FOCAL	10	"BSG,C2CD4C,CDC34,GZMM,HCN2,MADCAM1,ODF3L2,SHC2,THEG,TPGS1"
TCGA.AG.A01W.01A	19	455708	628741	39	0.449	SMALL-GAIN	FOCAL	9	"BSG,CDC34,GZMM,HCN2,MADCAM1,ODF3L2,POLRMT,SHC2,TPGS1"
TCGA.AA.A01Q.01A	19	815619	901925	27	0.5573	SMALL-GAIN	FOCAL	7	"AZU1,CFD,ELANE,LPPR3,MED16,PRTN3,R3HDM4"
TCGA.AA.A01Q.01A	19	1251503	1299775	10	0.4481	SMALL-GAIN	FOCAL	4	"C19orf24,CIRBP,EFNA2,MIDN"
TCGA.AG.4009.01A	19	1612164	1631987	5	0.4748	SMALL-GAIN	FOCAL	1	TCF3
TCGA.AA.A02K.01A	19	1791703	1809589	12	0.4992	SMALL-GAIN	FOCAL	1	ATP8B3
TCGA.AG.4009.01A	19	2185805	2221973	19	0.3976	SMALL-GAIN	FOCAL	1	DOT1L
TCGA.AA.A01Q.01A	19	2339016	2426896	20	0.4609	SMALL-GAIN	FOCAL	3	"SPPL2B,TIMM13,TMPRSS9"
TCGA.AA.3861.01A	19	2833652	3013638	35	0.6084	SMALL-GAIN	FOCAL	7	"TLE2,TLE6,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AG.4009.01A	19	2873443	3013638	23	0.4828	SMALL-GAIN	FOCAL	5	"TLE2,TLE6,ZNF556,ZNF57,ZNF77"
TCGA.AG.4009.01A	19	3638830	3664770	11	0.5321	SMALL-GAIN	FOCAL	1	PIP5K1C
TCGA.AA.A010.01A	19	3808818	3959059	37	0.4259	SMALL-GAIN	FOCAL	4	"ATCAY,DAPK3,NMRK2,ZFR2"
TCGA.AG.4009.01A	19	3813790	3942041	22	0.6087	SMALL-GAIN	FOCAL	3	"ATCAY,NMRK2,ZFR2"
TCGA.AG.4009.01A	19	4154848	4180761	12	0.6586	SMALL-GAIN	FOCAL	2	"CREB3L3,SIRT6"
TCGA.AG.4009.01A	19	4231136	4288188	15	0.6283	SMALL-GAIN	FOCAL	3	"CCDC94,EBI3,SHD"
TCGA.AG.4009.01A	19	5238878	5590278	15	0.5941	SMALL-GAIN	FOCAL	3	"PTPRS,SAFB2,ZNRF4"
TCGA.AA.A00L.01A	19	5600094	5668124	28	0.64	SMALL-GAIN	FOCAL	2	"SAFB,SAFB2"
TCGA.AG.3906.01A	19	5679284	5776132	38	0.5208	SMALL-GAIN	FOCAL	5	"C19orf70,CATSPERD,HSD11B1L,LONP1,RPL36"
TCGA.AG.3909.01A	19	5719673	5782979	23	0.5235	SMALL-GAIN	FOCAL	3	"CATSPERD,LONP1,PRR22"
TCGA.AG.4009.01A	19	5724749	5772752	19	0.5507	SMALL-GAIN	FOCAL	1	CATSPERD
TCGA.AA.A00L.01A	19	5843775	6312139	52	0.5985	SMALL-GAIN	FOCAL	10	"ACER1,ACSBG2,CAPS,FUT3,FUT5,MLLT1,NDUFA11,RANBP3,RFX2,VMAC"
TCGA.AA.A010.01A	19	5866685	6165867	47	0.4982	SMALL-GAIN	FOCAL	7	"ACSBG2,CAPS,FUT5,NDUFA11,RANBP3,RFX2,VMAC"
TCGA.AG.4009.01A	19	5866685	6361544	61	0.4197	SMALL-GAIN	FOCAL	10	"ACER1,ACSBG2,CAPS,CLPP,FUT5,MLLT1,NDUFA11,RANBP3,RFX2,VMAC"
TCGA.AM.5820	19	6226005	6292979	23	0.4304	SMALL-GAIN	FOCAL	1	MLLT1
TCGA.AA.A010.01A	19	6481602	6712271	39	0.469	SMALL-GAIN	FOCAL	6	"C3,CD70,DENND1C,TNFSF14,TNFSF9,TUBB4A"
TCGA.AA.A00Q.01A	19	6710951	6751018	16	0.5981	SMALL-GAIN	FOCAL	3	"C3,GPR108,TRIP10"
TCGA.AA.A01Q.01A	19	6752577	6753429	2	0.3788	SMALL-GAIN	FOCAL	1	SH2D3A
TCGA.AG.4009.01A	19	6763625	6847959	16	0.4053	SMALL-GAIN	FOCAL	2	"SH2D3A,VAV1"
TCGA.AA.A010.01A	19	6833173	6939941	28	0.5604	SMALL-GAIN	FOCAL	2	"ADGRE1,VAV1"
TCGA.AG.4009.01A	19	6887544	7504785	45	0.45	SMALL-GAIN	FOCAL	8	"ADGRE1,ARHGEF18,INSR,MBD3L2,MBD3L3,MBD3L4,MBD3L5,ZNF557"
TCGA.AG.3611.01A	19	7075010	7083321	4	0.5032	SMALL-GAIN	FOCAL	1	ZNF557
TCGA.CK.5914.01A	19	7117039	7504785	21	0.5566	SMALL-GAIN	FOCAL	2	"ARHGEF18,INSR"
TCGA.AG.3906.01A	19	7546868	7604787	23	0.6019	SMALL-GAIN	FOCAL	5	"C19orf45,MCOLN1,PEX11G,PNPLA6,ZNF358"
TCGA.AG.3906.01A	19	7670075	7688029	11	0.518	SMALL-GAIN	FOCAL	2	"CAMSAP3,XAB2"
TCGA.AA.3930.01A	19	7754067	7808991	14	0.4826	SMALL-GAIN	FOCAL	3	"CD209,CLEC4G,FCER2"
TCGA.AG.4009.01A	19	8120987	8376343	61	0.5957	SMALL-GAIN	FOCAL	5	"CCL25,CD320,CERS4,FBN3,NDUFA7"
TCGA.CK.5914.01A	19	8152700	8186095	26	0.5756	SMALL-GAIN	FOCAL	1	FBN3
TCGA.AA.A010.01A	19	8154985	8369867	50	0.4873	SMALL-GAIN	FOCAL	3	"CD320,CERS4,FBN3"
TCGA.AG.A015.01A	19	8172997	8182022	9	0.5694	SMALL-GAIN	FOCAL	1	FBN3
TCGA.AA.A00N.01A	19	8183729	8326541	25	0.3879	SMALL-GAIN	FOCAL	2	"CERS4,FBN3"
TCGA.AG.3906.01A	19	8367310	8402654	11	0.6388	SMALL-GAIN	FOCAL	4	"CD320,KANK3,NDUFA7,RPS28"
TCGA.AA.A00D.01A	19	8550496	8931804	23	0.4201	SMALL-GAIN	FOCAL	8	"ACTL9,ADAMTS10,HNRNPM,MYO1F,OR2Z1,PRAM1,ZNF414,ZNF558"
TCGA.AG.4009.01A	19	8609134	8620495	9	0.5753	SMALL-GAIN	FOCAL	1	MYO1F
TCGA.AG.3906.01A	19	8645750	8668560	12	0.5364	SMALL-GAIN	FOCAL	1	ADAMTS10
TCGA.AG.3906.01A	19	9056136	9067526	6	0.3962	SMALL-GAIN	FOCAL	1	MUC16
TCGA.AA.A01Q.01A	19	9203869	9324523	12	0.5011	SMALL-GAIN	FOCAL	6	"OR1M1,OR7D2,OR7G1,OR7G2,OR7G3,ZNF317"
TCGA.CK.5914.01A	19	9212915	9270742	9	0.6768	SMALL-GAIN	FOCAL	4	"OR7G1,OR7G2,OR7G3,ZNF317"
TCGA.AG.4009.01A	19	9449145	9529100	15	0.42	SMALL-GAIN	FOCAL	4	"ZNF177,ZNF266,ZNF559,ZNF559-ZNF177"
TCGA.AG.3906.01A	19	9577213	9585913	9	0.5093	SMALL-GAIN	FOCAL	1	ZNF560
TCGA.AG.4009.01A	19	9639055	9922061	26	0.4536	SMALL-GAIN	FOCAL	7	"FBXL12,ZNF121,ZNF426,ZNF561,ZNF562,ZNF812,ZNF846"
TCGA.AG.4009.01A	19	9958668	10073428	9	0.6158	SMALL-GAIN	FOCAL	3	"COL5A3,OLFM2,PIN1"
TCGA.CK.5914.01A	19	9959718	10081233	16	0.3964	SMALL-GAIN	FOCAL	3	"COL5A3,OLFM2,PIN1"
TCGA.AG.4009.01A	19	10087159	10169212	37	0.6039	SMALL-GAIN	FOCAL	2	"COL5A3,RDH8"
TCGA.AG.A01W.01A	19	10107748	10115394	10	0.547	SMALL-GAIN	FOCAL	1	COL5A3
TCGA.CK.5914.01A	19	10108581	10169212	18	0.5296	SMALL-GAIN	FOCAL	2	"COL5A3,RDH8"
TCGA.AG.4009.01A	19	10222310	10381768	51	0.4433	SMALL-GAIN	FOCAL	7	"DNMT1,EIF3G,ICAM1,MRPL4,P2RY11,PPAN-P2RY11,S1PR2"
TCGA.AG.4009.01A	19	10426035	10600274	48	0.4339	SMALL-GAIN	FOCAL	7	"CDC37,FDX1L,ICAM3,KEAP1,PDE4A,RAVER1,TYK2"
TCGA.AA.A010.01A	19	10463083	10476201	12	0.5448	SMALL-GAIN	FOCAL	1	TYK2
TCGA.A6.3808.01A	19	10502195	10736241	58	0.618	SMALL-GAIN	FOCAL	9	"AP1M2,ATG4D,CDC37,CDKN2D,KEAP1,KRI1,PDE4A,S1PR5,SLC44A2"
TCGA.AG.A00C.01A	19	10502195	10787799	62	0.5146	SMALL-GAIN	FOCAL	10	"AP1M2,ATG4D,CDC37,CDKN2D,ILF3,KEAP1,KRI1,PDE4A,S1PR5,SLC44A2"
TCGA.AG.A01W.01A	19	10650724	10660809	12	0.5399	SMALL-GAIN	FOCAL	1	ATG4D
TCGA.AG.4009.01A	19	10736876	10893596	36	0.4048	SMALL-GAIN	FOCAL	4	"DNM2,ILF3,QTRT1,SLC44A2"
TCGA.AA.A010.01A	19	10799198	10946658	33	0.4143	SMALL-GAIN	FOCAL	4	"DNM2,ILF3,QTRT1,TMED1"
TCGA.AG.A01W.01A	19	10990581	11033376	19	0.4001	SMALL-GAIN	FOCAL	1	CARM1
TCGA.AG.4009.01A	19	11018694	11034492	11	0.5445	SMALL-GAIN	FOCAL	2	"CARM1,YIPF2"
TCGA.AA.A010.01A	19	11141355	11266241	33	0.6774	SMALL-GAIN	FOCAL	3	"LDLR,SMARCA4,SPC24"
TCGA.AG.4009.01A	19	11168884	11288994	28	0.5828	SMALL-GAIN	FOCAL	4	"KANK2,LDLR,SMARCA4,SPC24"
TCGA.AG.3909.01A	19	11200168	11241896	17	0.6352	SMALL-GAIN	FOCAL	1	LDLR
TCGA.AG.4009.01A	19	11323805	11354183	17	0.4283	SMALL-GAIN	FOCAL	2	"C19orf80,DOCK6"
TCGA.AG.4009.01A	19	11406922	11512638	34	0.6498	SMALL-GAIN	FOCAL	8	"CCDC159,EPOR,LPPR2,RAB3D,RGL3,SWSAP1,TMEM205,TSPAN16"
TCGA.AG.3906.01A	19	11545564	11685778	35	0.4316	SMALL-GAIN	FOCAL	8	"ACP5,CCDC151,CNN1,ECSIT,ELAVL3,ELOF1,PRKCSH,ZNF653"
TCGA.AG.4009.01A	19	12757387	12801929	31	0.4827	SMALL-GAIN	FOCAL	5	"DHPS,FBXW9,MAN2B1,WDR83,WDR83OS"
TCGA.AG.4009.01A	19	12996094	13040985	21	0.5293	SMALL-GAIN	FOCAL	4	"FARSA,GCDH,KLF1,SYCE2"
TCGA.AG.3906.01A	19	13063456	13184682	9	0.3908	SMALL-GAIN	FOCAL	4	"DAND5,GADD45GIP1,NFIX,RAD23A"
TCGA.AG.4009.01A	19	13338197	13397265	19	0.5783	SMALL-GAIN	FOCAL	1	CACNA1A
TCGA.EI.6513	19	13411481	13680763	90	0.5263	SMALL-GAIN	FOCAL	1	CACNA1A
TCGA.AG.4009.01A	19	13419208	13862528	13	0.4159	SMALL-GAIN	FOCAL	2	"CACNA1A,CCDC130"
TCGA.AA.A010.01A	19	13441005	13616699	10	0.4328	SMALL-GAIN	FOCAL	1	CACNA1A
TCGA.D5.6541	19	13576173	13607970	18	0.6444	SMALL-GAIN	FOCAL	1	CACNA1A
TCGA.AG.4009.01A	19	13985472	14046492	24	0.3836	SMALL-GAIN	FOCAL	4	"C19orf57,CC2D1A,NANOS3,PODNL1"
TCGA.AG.3906.01A	19	13991200	14164369	46	0.3968	SMALL-GAIN	FOCAL	9	"C19orf57,CC2D1A,DCAF15,IL27RA,NANOS3,PALM3,PODNL1,RFX1,RLN3"
TCGA.AG.3891.01A	19	13996735	14029493	11	0.4976	SMALL-GAIN	FOCAL	2	"C19orf57,CC2D1A"
TCGA.AA.A01Q.01A	19	14029493	14069810	12	0.4829	SMALL-GAIN	FOCAL	3	"CC2D1A,DCAF15,PODNL1"
TCGA.AA.A010.01A	19	14138986	14150302	5	0.4165	SMALL-GAIN	FOCAL	2	"IL27RA,RLN3"
TCGA.AG.4009.01A	19	14236885	14521006	32	0.4533	SMALL-GAIN	FOCAL	4	"ADGRE5,ADGRL1,ASF1B,DDX39A"
TCGA.AG.3891.01A	19	14269142	14294293	10	0.6009	SMALL-GAIN	FOCAL	1	ADGRL1
TCGA.AA.A01Q.01A	19	14554262	14580955	8	0.3843	SMALL-GAIN	FOCAL	1	PKN1
TCGA.AA.A00N.01A	19	14815815	15067249	35	0.6286	SMALL-GAIN	FOCAL	8	"ADGRE2,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,ZNF333"
TCGA.F4.6704	19	15036729	15301719	87	0.4083	SMALL-GAIN	FOCAL	8	"CASP14,CCDC105,ILVBL,NOTCH3,OR1I1,OR7C2,SLC1A6,SYDE1"
TCGA.CK.5914.01A	19	15726377	15769492	18	0.4148	SMALL-GAIN	FOCAL	2	"CYP4F3,CYP4F8"
TCGA.AA.A00N.01A	19	15734723	15794254	18	0.5765	SMALL-GAIN	FOCAL	3	"CYP4F12,CYP4F3,CYP4F8"
TCGA.AG.3909.01A	19	15769022	15989532	18	0.5063	SMALL-GAIN	FOCAL	8	"CYP4F12,CYP4F2,CYP4F3,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H5"
TCGA.CK.5914.01A	19	15838802	16198775	31	0.4026	SMALL-GAIN	FOCAL	9	"CYP4F11,CYP4F2,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,TPM4"
TCGA.AG.A01W.01A	19	16484782	16504776	14	0.5061	SMALL-GAIN	FOCAL	1	EPS15L1
TCGA.AG.A00C.01A	19	16551600	16770734	35	0.3981	SMALL-GAIN	FOCAL	7	"C19orf44,CALR3,CHERP,EPS15L1,MED26,SLC35E1,SMIM7"
TCGA.AG.3909.01A	19	16764795	16770734	3	0.4174	SMALL-GAIN	FOCAL	1	SMIM7
TCGA.AA.A01Q.01A	19	16771992	16860653	8	0.4745	SMALL-GAIN	FOCAL	2	"NWD1,TMEM38A"
TCGA.AG.A01W.01A	19	16835465	16871226	13	0.4159	SMALL-GAIN	FOCAL	1	NWD1
TCGA.AG.3909.01A	19	17013427	17273760	48	0.4796	SMALL-GAIN	FOCAL	3	"CPAMD8,HAUS8,MYO9B"
TCGA.AG.4009.01A	19	17015015	17115046	22	0.4592	SMALL-GAIN	FOCAL	1	CPAMD8
TCGA.AA.A010.01A	19	17032654	17107870	17	0.5994	SMALL-GAIN	FOCAL	1	CPAMD8
TCGA.AG.3891.01A	19	17091275	17386531	76	0.5574	SMALL-GAIN	FOCAL	8	"BABAM1,CPAMD8,HAUS8,MYO9B,NR2F6,OCEL1,USE1,USHBP1"
TCGA.AG.A01W.01A	19	17177013	17183420	8	0.4881	SMALL-GAIN	FOCAL	1	HAUS8
TCGA.AG.4009.01A	19	17212516	17296672	16	0.6698	SMALL-GAIN	FOCAL	1	MYO9B
TCGA.AG.A01W.01A	19	17296527	17304711	6	0.5048	SMALL-GAIN	FOCAL	1	MYO9B
TCGA.AG.3891.01A	19	17476066	17728481	48	0.4767	SMALL-GAIN	FOCAL	10	"BST2,COLGALT1,FAM129C,MVB12A,NXNL1,PGLS,PLVAP,SLC27A1,TMEM221,UNC13A"
TCGA.AG.4009.01A	19	17530893	17644344	21	0.5567	SMALL-GAIN	FOCAL	6	"FAM129C,MVB12A,NXNL1,PGLS,SLC27A1,TMEM221"
TCGA.AA.A01Q.01A	19	17740927	17785424	8	0.5074	SMALL-GAIN	FOCAL	1	UNC13A
TCGA.AF.3914.01A	19	17865890	17983169	44	0.5688	SMALL-GAIN	FOCAL	6	"B3GNT3,FCHO1,INSL3,JAK3,RPL18A,SLC5A5"
TCGA.AA.A010.01A	19	17875130	18004470	58	0.4358	SMALL-GAIN	FOCAL	6	"B3GNT3,FCHO1,INSL3,JAK3,RPL18A,SLC5A5"
TCGA.AG.4009.01A	19	17886196	18004470	42	0.5953	SMALL-GAIN	FOCAL	6	"B3GNT3,FCHO1,INSL3,JAK3,RPL18A,SLC5A5"
TCGA.AG.A01W.01A	19	17980074	18033949	11	0.4918	SMALL-GAIN	FOCAL	1	SLC5A5
TCGA.AG.4009.01A	19	18170330	18186512	11	0.6042	SMALL-GAIN	FOCAL	1	IL12RB1
TCGA.AA.A010.01A	19	18170330	18187035	12	0.4203	SMALL-GAIN	FOCAL	1	IL12RB1
TCGA.AA.A00N.01A	19	18170716	18197504	16	0.4043	SMALL-GAIN	FOCAL	1	IL12RB1
TCGA.CK.5914.01A	19	18174636	18197504	13	0.6122	SMALL-GAIN	FOCAL	1	IL12RB1
TCGA.AF.3914.01A	19	18557082	18702854	24	0.4113	SMALL-GAIN	FOCAL	5	"C19orf60,ELL,FKBP8,KXD1,UBA52"
TCGA.AG.A01W.01A	19	18826382	18837817	11	0.6745	SMALL-GAIN	FOCAL	1	CRTC1
TCGA.AA.A010.01A	19	19105128	19120703	6	0.4022	SMALL-GAIN	FOCAL	1	SUGP2
TCGA.AG.4009.01A	19	19212559	19313132	25	0.531	SMALL-GAIN	FOCAL	7	"MEF2B,MEF2BNB,MEF2BNB-MEF2B,NR2C2AP,RFXANK,SLC25A42,TMEM161A"
TCGA.AA.A010.01A	19	19221340	19309915	28	0.6748	SMALL-GAIN	FOCAL	6	"MEF2B,MEF2BNB,MEF2BNB-MEF2B,RFXANK,SLC25A42,TMEM161A"
TCGA.AA.A00N.01A	19	19291457	19309915	11	0.4404	SMALL-GAIN	FOCAL	3	"MEF2BNB,MEF2BNB-MEF2B,RFXANK"
TCGA.AG.4009.01A	19	19387707	19625378	40	0.4289	SMALL-GAIN	FOCAL	4	"GATAD2A,MAU2,SUGP1,TSSK6"
TCGA.AA.A010.01A	19	19843670	20188882	27	0.6146	SMALL-GAIN	FOCAL	6	"ZNF14,ZNF253,ZNF506,ZNF682,ZNF90,ZNF93"
TCGA.AG.4009.01A	19	20150053	20188882	2	0.6411	SMALL-GAIN	FOCAL	2	"ZNF682,ZNF90"
TCGA.DY.A1DF	19	20249982	20327878	10	0.3837	SMALL-GAIN	FOCAL	1	ZNF486
TCGA.AG.3909.01A	19	20748422	21117733	10	0.5419	SMALL-GAIN	FOCAL	3	"ZNF626,ZNF737,ZNF85"
TCGA.AA.A010.01A	19	20748422	21205541	14	0.6565	SMALL-GAIN	FOCAL	4	"ZNF430,ZNF626,ZNF737,ZNF85"
TCGA.F4.6461	19	20836910	20982626	25	0.5246	SMALL-GAIN	FOCAL	1	ZNF626
TCGA.AG.A01W.01A	19	21945263	21961853	8	0.6135	SMALL-GAIN	FOCAL	1	ZNF100
TCGA.AA.A00N.01A	19	21950131	22952695	52	0.3884	SMALL-GAIN	FOCAL	9	"ZNF100,ZNF208,ZNF257,ZNF43,ZNF492,ZNF676,ZNF729,ZNF98,ZNF99"
TCGA.AA.A02E.01A	19	22171533	22379318	13	0.5272	SMALL-GAIN	FOCAL	3	"ZNF208,ZNF257,ZNF676"
TCGA.AG.A00C.01A	19	23542295	23557390	9	0.4873	SMALL-GAIN	FOCAL	1	ZNF91
TCGA.AA.3842	19	24503984	30411909	871	0.4455	SMALL-GAIN	FOCAL	6	"C19orf12,CCNE1,PLEKHF1,POP4,UQCRFS1,VSTM2B"
TCGA.AY.A69D	19	27828663	30125152	786	0.407	SMALL-GAIN	FOCAL	3	"POP4,UQCRFS1,VSTM2B"
TCGA.AA.3872	19	28069336	32136443	1422	0.6045	SMALL-GAIN	FOCAL	10	"C19orf12,CCNE1,PLEKHF1,POP4,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,ZNF536"
TCGA.AF.3913	19	29247282	30199850	416	0.407	SMALL-GAIN	FOCAL	5	"C19orf12,PLEKHF1,POP4,UQCRFS1,VSTM2B"
TCGA.CK.5914.01A	19	32923571	32971253	15	0.5262	SMALL-GAIN	FOCAL	1	DPY19L3
TCGA.AA.A00N.01A	19	32923571	32972938	16	0.5135	SMALL-GAIN	FOCAL	1	DPY19L3
TCGA.AG.4009.01A	19	33090546	33149779	23	0.4688	SMALL-GAIN	FOCAL	1	ANKRD27
TCGA.AG.4009.01A	19	33321462	33503495	45	0.5504	SMALL-GAIN	FOCAL	4	"C19orf40,CEP89,RHPN2,SLC7A9"
TCGA.AG.3891.01A	19	33414297	33687562	60	0.4964	SMALL-GAIN	FOCAL	6	"C19orf40,CEP89,GPATCH1,LRP3,RHPN2,WDR88"
TCGA.AA.A02K.01A	19	33502538	33602589	17	0.4106	SMALL-GAIN	FOCAL	2	"GPATCH1,RHPN2"
TCGA.AM.5820	19	33680781	33795240	31	0.6177	SMALL-GAIN	FOCAL	3	"CEBPA,LRP3,SLC7A10"
TCGA.AM.5820	19	33907100	34065727	59	0.4554	SMALL-GAIN	FOCAL	1	PEPD
TCGA.AM.5820	19	34094184	34310288	69	0.4603	SMALL-GAIN	FOCAL	2	"CHST8,KCTD15"
TCGA.AG.A01W.01A	19	34897569	34999834	4	0.5659	SMALL-GAIN	FOCAL	3	"PDCD2L,UBA2,WTIP"
TCGA.AG.3906.01A	19	34954880	34984369	6	0.4134	SMALL-GAIN	FOCAL	2	"UBA2,WTIP"
TCGA.AG.A01W.01A	19	35153862	35626264	11	0.531	SMALL-GAIN	FOCAL	10	"FXYD3,GRAMD1A,HPN,LGI4,SCN1B,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AA.A01Q.01A	19	35451731	35514111	8	0.5719	SMALL-GAIN	FOCAL	2	"GRAMD1A,ZNF792"
TCGA.AG.4009.01A	19	35530484	35611899	11	0.3796	SMALL-GAIN	FOCAL	3	"FXYD3,HPN,SCN1B"
TCGA.AG.4009.01A	19	35639565	35749816	15	0.4002	SMALL-GAIN	FOCAL	4	"FAM187B,FXYD5,FXYD7,LSR"
TCGA.AG.3891.01A	19	35793319	36018762	42	0.3858	SMALL-GAIN	FOCAL	8	"CD22,DMKN,FFAR1,FFAR2,FFAR3,KRTDAP,MAG,SBSN"
TCGA.AA.A00L.01A	19	35804145	36015559	34	0.6201	SMALL-GAIN	FOCAL	8	"CD22,DMKN,FFAR1,FFAR2,FFAR3,KRTDAP,MAG,SBSN"
TCGA.AG.4009.01A	19	35804145	36027666	40	0.5601	SMALL-GAIN	FOCAL	9	"CD22,DMKN,FFAR1,FFAR2,FFAR3,GAPDHS,KRTDAP,MAG,SBSN"
TCGA.AA.A010.01A	19	35836474	35993669	17	0.625	SMALL-GAIN	FOCAL	6	"CD22,DMKN,FFAR1,FFAR2,FFAR3,KRTDAP"
TCGA.CK.5914.01A	19	35842405	35993669	15	0.6412	SMALL-GAIN	FOCAL	5	"DMKN,FFAR1,FFAR2,FFAR3,KRTDAP"
TCGA.AA.A01Q.01A	19	35849756	35978262	4	0.3897	SMALL-GAIN	FOCAL	3	"FFAR2,FFAR3,KRTDAP"
TCGA.AA.A00N.01A	19	35862225	36003921	22	0.6518	SMALL-GAIN	FOCAL	3	"DMKN,FFAR2,KRTDAP"
TCGA.AG.3909.01A	19	35940569	36018762	21	0.4738	SMALL-GAIN	FOCAL	4	"DMKN,FFAR2,KRTDAP,SBSN"
TCGA.AG.4009.01A	19	36053309	36168667	29	0.4302	SMALL-GAIN	FOCAL	6	"ATP4A,COX6B1,ETV2,HAUS5,RBM42,UPK1A"
TCGA.AG.3891.01A	19	36157657	36230162	25	0.6106	SMALL-GAIN	FOCAL	4	"IGFLR1,KMT2B,UPK1A,ZBTB32"
TCGA.AA.A010.01A	19	36497303	36501774	6	0.5095	SMALL-GAIN	FOCAL	2	"ALKBH6,SYNE4"
TCGA.AA.A00L.01A	19	36572308	36631883	28	0.6243	SMALL-GAIN	FOCAL	5	"CAPNS1,OVOL3,POLR2I,TBCB,WDR62"
TCGA.AG.3891.01A	19	36616303	36692782	13	0.6761	SMALL-GAIN	FOCAL	4	"CAPNS1,COX7A1,TBCB,ZNF565"
TCGA.AG.3909.01A	19	36673387	36692782	5	0.672	SMALL-GAIN	FOCAL	1	ZNF565
TCGA.AA.A010.01A	19	36851288	37065666	19	0.4559	SMALL-GAIN	FOCAL	5	"ZFP14,ZFP82,ZNF260,ZNF529,ZNF566"
TCGA.AA.A00N.01A	19	37209843	37697880	33	0.5002	SMALL-GAIN	FOCAL	10	"LOC728485,ZNF345,ZNF420,ZNF567,ZNF568,ZNF585A,ZNF585B,ZNF790,ZNF829,ZNF850"
TCGA.AA.3509.01A	19	37398781	37904689	38	0.4242	SMALL-GAIN	FOCAL	9	"HKR1,ZNF383,ZNF420,ZNF527,ZNF568,ZNF569,ZNF585A,ZNF585B,ZNF829"
TCGA.AA.A01Q.01A	19	37646712	37697880	7	0.6078	SMALL-GAIN	FOCAL	2	"ZNF585A,ZNF585B"
TCGA.AG.A01W.01A	19	38355044	38646671	24	0.6294	SMALL-GAIN	FOCAL	2	"SIPA1L3,WDR87"
TCGA.AA.A010.01A	19	38572178	38688977	18	0.4844	SMALL-GAIN	FOCAL	1	SIPA1L3
TCGA.AG.4009.01A	19	38741906	38845311	16	0.4365	SMALL-GAIN	FOCAL	6	"C19orf33,CATSPERG,KCNK6,PPP1R14A,SPINT2,YIF1B"
TCGA.A6.3808.01A	19	38799363	38943431	63	0.6183	SMALL-GAIN	FOCAL	9	"CATSPERG,FAM98C,GGN,KCNK6,PSMD8,RASGRP4,RYR1,SPRED3,YIF1B"
TCGA.AG.3906.01A	19	38847332	38905436	31	0.4913	SMALL-GAIN	FOCAL	6	"CATSPERG,FAM98C,GGN,PSMD8,RASGRP4,SPRED3"
TCGA.AG.4009.01A	19	38899349	39025769	71	0.5273	SMALL-GAIN	FOCAL	3	"FAM98C,RASGRP4,RYR1"
TCGA.AA.A00N.01A	19	38905436	38938968	15	0.3833	SMALL-GAIN	FOCAL	2	"RASGRP4,RYR1"
TCGA.AA.A010.01A	19	38912568	39019539	63	0.6342	SMALL-GAIN	FOCAL	2	"RASGRP4,RYR1"
TCGA.AG.3611.01A	19	38995339	39027337	26	0.5809	SMALL-GAIN	FOCAL	1	RYR1
TCGA.CK.5914.01A	19	39006690	39034389	19	0.5073	SMALL-GAIN	FOCAL	1	RYR1
TCGA.AG.3909.01A	19	39014462	39057491	19	0.3799	SMALL-GAIN	FOCAL	1	RYR1
TCGA.AG.3611.01A	19	39055602	39116609	18	0.592	SMALL-GAIN	FOCAL	3	"EIF3K,MAP4K1,RYR1"
TCGA.AG.4009.01A	19	39075551	39200841	36	0.5113	SMALL-GAIN	FOCAL	4	"ACTN4,EIF3K,MAP4K1,RYR1"
TCGA.AA.A01Q.01A	19	39218530	39234559	13	0.4879	SMALL-GAIN	FOCAL	2	"ACTN4,CAPN12"
TCGA.CK.5914.01A	19	39227096	39281288	10	0.5756	SMALL-GAIN	FOCAL	3	"CAPN12,LGALS7,LGALS7B"
TCGA.AG.3909.01A	19	39227758	39234559	7	0.5107	SMALL-GAIN	FOCAL	1	CAPN12
TCGA.AG.4009.01A	19	39369744	39422981	26	0.4737	SMALL-GAIN	FOCAL	5	"CCER2,MRPS12,NFKBIB,SARS2,SIRT2"
TCGA.AG.4009.01A	19	39847485	39876592	13	0.4864	SMALL-GAIN	FOCAL	2	"PAF1,SAMD4B"
TCGA.AG.4009.01A	19	39906935	39973460	31	0.5714	SMALL-GAIN	FOCAL	4	"PLEKHG2,RPS16,SUPT5H,TIMM50"
TCGA.CK.5914.01A	19	39926206	39957088	10	0.5184	SMALL-GAIN	FOCAL	2	"RPS16,SUPT5H"
TCGA.AG.3891.01A	19	39971146	39998797	15	0.508	SMALL-GAIN	FOCAL	2	"DLL3,TIMM50"
TCGA.AG.A01W.01A	19	40140649	40143572	4	0.6124	SMALL-GAIN	FOCAL	0	None
TCGA.AY.A54L.01A	19	40389630	40399198	5	0.6176	SMALL-GAIN	FOCAL	1	FCGBP
TCGA.AA.A00N.01A	19	40477031	40590578	23	0.4066	SMALL-GAIN	FOCAL	4	"PSMC4,ZNF546,ZNF780A,ZNF780B"
TCGA.AZ.4684.01A	19	40511948	40541832	8	0.4555	SMALL-GAIN	FOCAL	2	"ZNF546,ZNF780B"
TCGA.AG.3909.01A	19	40697898	40722040	9	0.5705	SMALL-GAIN	FOCAL	2	"MAP3K10,TTC9B"
TCGA.AG.A01W.01A	19	40729200	40742511	12	0.4398	SMALL-GAIN	FOCAL	2	"AKT2,CNTD2"
TCGA.AG.4009.01A	19	40739729	40913770	30	0.5027	SMALL-GAIN	FOCAL	5	"AKT2,C19orf47,HIPK4,PLD3,PRX"
TCGA.AA.A010.01A	19	40748413	40928722	27	0.4102	SMALL-GAIN	FOCAL	6	"AKT2,C19orf47,HIPK4,PLD3,PRX,SERTAD1"
TCGA.AG.3906.01A	19	41056087	41096654	20	0.6067	SMALL-GAIN	FOCAL	2	"SHKBP1,SPTBN4"
TCGA.AA.A01Q.01A	19	41105036	41173961	13	0.4315	SMALL-GAIN	FOCAL	2	"LTBP4,NUMBL"
TCGA.AG.3906.01A	19	41173352	41313641	44	0.4773	SMALL-GAIN	FOCAL	8	"ADCK4,C19orf54,EGLN2,ITPKC,MIA,NUMBL,RAB4B,SNRPA"
TCGA.AG.3909.01A	19	41224139	41268768	14	0.3942	SMALL-GAIN	FOCAL	3	"C19orf54,ITPKC,SNRPA"
TCGA.AA.A00N.01A	19	41245225	41269448	11	0.5309	SMALL-GAIN	FOCAL	3	"C19orf54,ITPKC,SNRPA"
TCGA.AG.4009.01A	19	41245225	41292550	17	0.5727	SMALL-GAIN	FOCAL	5	"C19orf54,ITPKC,MIA,RAB4B,SNRPA"
TCGA.AG.A00C.01A	19	41257253	41313641	18	0.3989	SMALL-GAIN	FOCAL	4	"EGLN2,MIA,RAB4B,SNRPA"
TCGA.AG.3611.01A	19	41281410	41387886	29	0.6197	SMALL-GAIN	FOCAL	5	"CYP2A6,CYP2A7,EGLN2,MIA,RAB4B"
TCGA.CK.5914.01A	19	41349654	41385940	15	0.4477	SMALL-GAIN	FOCAL	2	"CYP2A6,CYP2A7"
TCGA.AG.3909.01A	19	41349654	41595903	30	0.5747	SMALL-GAIN	FOCAL	4	"CYP2A13,CYP2A6,CYP2A7,CYP2B6"
TCGA.AG.4009.01A	19	41349654	41596281	31	0.4559	SMALL-GAIN	FOCAL	4	"CYP2A13,CYP2A6,CYP2A7,CYP2B6"
TCGA.AA.A01Q.01A	19	41350489	41594783	27	0.5884	SMALL-GAIN	FOCAL	4	"CYP2A13,CYP2A6,CYP2A7,CYP2B6"
TCGA.AG.3611.01A	19	41594355	41601653	9	0.4086	SMALL-GAIN	FOCAL	1	CYP2A13
TCGA.AA.A01Q.01A	19	41627820	41633755	5	0.5746	SMALL-GAIN	FOCAL	1	CYP2F1
TCGA.AG.4009.01A	19	41807403	41828453	9	0.4885	SMALL-GAIN	FOCAL	2	"CCDC97,HNRNPUL1"
TCGA.AG.3906.01A	19	41847776	41869279	7	0.4481	SMALL-GAIN	FOCAL	2	"B9D2,TGFB1"
TCGA.AG.4009.01A	19	41884163	42133199	37	0.4953	SMALL-GAIN	FOCAL	8	"ATP5SL,B3GNT8,BCKDHA,CEACAM21,CEACAM4,ERICH4,EXOSC5,TMEM91"
TCGA.AA.A00N.01A	19	41939135	42125639	13	0.4494	SMALL-GAIN	FOCAL	4	"ATP5SL,CEACAM21,CEACAM4,ERICH4"
TCGA.DM.A0XD	19	42133047	42395969	66	0.491	SMALL-GAIN	FOCAL	10	"ARHGEF1,CD79A,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,DMRTC2,LYPD4,RPS19"
TCGA.AA.A01F.01A	19	42392806	42407419	13	0.4204	SMALL-GAIN	FOCAL	1	ARHGEF1
TCGA.CK.5914.01A	19	42510745	42558445	7	0.6138	SMALL-GAIN	FOCAL	1	GRIK5
TCGA.AA.A01F.01A	19	42790876	42798709	10	0.536	SMALL-GAIN	FOCAL	1	CIC
TCGA.AA.A01Q.01A	19	42837710	42840065	4	0.6003	SMALL-GAIN	FOCAL	1	MEGF8
TCGA.AG.4009.01A	19	42837710	43032403	48	0.5292	SMALL-GAIN	FOCAL	5	"CEACAM1,CNFN,CXCL17,LIPE,MEGF8"
TCGA.AA.A01Q.01A	19	42866488	42872566	3	0.4865	SMALL-GAIN	FOCAL	1	MEGF8
TCGA.AG.4009.01A	19	43228079	43570633	35	0.434	SMALL-GAIN	FOCAL	7	"PSG1,PSG11,PSG2,PSG3,PSG6,PSG7,PSG8"
TCGA.AZ.4684.01A	19	43406501	43530445	19	0.5955	SMALL-GAIN	FOCAL	3	"PSG11,PSG6,PSG7"
TCGA.AG.4009.01A	19	43773450	44012049	29	0.6725	SMALL-GAIN	FOCAL	6	"CD177,ETHE1,LYPD3,PHLDB3,PSG9,TEX101"
TCGA.AA.A010.01A	19	43982144	44008071	12	0.6159	SMALL-GAIN	FOCAL	1	PHLDB3
TCGA.AG.A00C.01A	19	44010931	44056902	14	0.5692	SMALL-GAIN	FOCAL	3	"ETHE1,XRCC1,ZNF575"
TCGA.AG.3909.01A	19	44153004	44174145	7	0.644	SMALL-GAIN	FOCAL	1	PLAUR
TCGA.AA.A010.01A	19	44171691	44236993	6	0.5842	SMALL-GAIN	FOCAL	3	"IRGC,PLAUR,SMG9"
TCGA.DM.A28M.01A	19	44351629	44466821	8	0.6206	SMALL-GAIN	FOCAL	4	"ZNF221,ZNF283,ZNF404,ZNF45"
TCGA.CK.5914.01A	19	44660386	44936345	30	0.6424	SMALL-GAIN	FOCAL	8	"ZNF112,ZNF226,ZNF227,ZNF229,ZNF233,ZNF234,ZNF235,ZNF285"
TCGA.AG.4009.01A	19	45004200	45296700	45	0.3992	SMALL-GAIN	FOCAL	8	"BCL3,CBLC,CEACAM16,CEACAM19,CEACAM20,IGSF23,PVR,ZNF180"
TCGA.AG.3909.01A	19	45016870	45186638	23	0.6629	SMALL-GAIN	FOCAL	4	"CEACAM19,CEACAM20,IGSF23,PVR"
TCGA.AA.A00N.01A	19	45322574	45385430	8	0.4189	SMALL-GAIN	FOCAL	2	"BCAM,PVRL2"
TCGA.AG.4009.01A	19	45368481	45377540	4	0.6464	SMALL-GAIN	FOCAL	1	PVRL2
TCGA.AG.A016.01A	19	45465183	45525261	15	0.453	SMALL-GAIN	FOCAL	2	"CLPTM1,RELB"
TCGA.AG.A01W.01A	19	45763122	45776162	11	0.4481	SMALL-GAIN	FOCAL	1	MARK4
TCGA.AG.4009.01A	19	46020930	46198648	39	0.4017	SMALL-GAIN	FOCAL	7	"EML2,GIPR,GPR4,OPA3,QPCTL,SNRPD2,VASP"
TCGA.AA.A010.01A	19	46331038	46345456	7	0.4801	SMALL-GAIN	FOCAL	1	SYMPK
TCGA.AG.3909.01A	19	46543456	46878829	28	0.4064	SMALL-GAIN	FOCAL	6	"HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,PPP5C"
TCGA.AG.3891.01A	19	46893262	47112064	9	0.6034	SMALL-GAIN	FOCAL	6	"CALM3,CCDC8,PNMAL1,PNMAL2,PPP5C,PPP5D1"
TCGA.AA.A01F.01A	19	47214117	47287694	23	0.3824	SMALL-GAIN	FOCAL	4	"FKRP,PRKD2,SLC1A5,STRN4"
TCGA.AA.A010.01A	19	47813065	47884424	18	0.6003	SMALL-GAIN	FOCAL	3	"C5AR1,C5AR2,DHX34"
TCGA.AA.A01F.01A	19	47875935	47885220	8	0.4971	SMALL-GAIN	FOCAL	1	DHX34
TCGA.AA.A02K.01A	19	47909719	47912678	5	0.6291	SMALL-GAIN	FOCAL	1	MEIS3
TCGA.AA.A01Q.01A	19	47910098	47920398	7	0.4906	SMALL-GAIN	FOCAL	1	MEIS3
TCGA.AA.A010.01A	19	48281981	48654460	67	0.6557	SMALL-GAIN	FOCAL	9	"BSPH1,CABP5,CRX,ELSPBP1,LIG1,PLA2G4C,SEPW1,SULT2A1,TPRX1"
TCGA.AG.4009.01A	19	48283897	48665466	60	0.4423	SMALL-GAIN	FOCAL	9	"BSPH1,CABP5,CRX,ELSPBP1,LIG1,PLA2G4C,SEPW1,SULT2A1,TPRX1"
TCGA.AA.A01Q.01A	19	48305002	48577986	29	0.4396	SMALL-GAIN	FOCAL	7	"BSPH1,CABP5,CRX,ELSPBP1,PLA2G4C,SULT2A1,TPRX1"
TCGA.AA.A010.01A	19	48733667	48876746	28	0.4416	SMALL-GAIN	FOCAL	6	"CARD8,CCDC114,EMP3,SYNGR4,TMEM143,ZNF114"
TCGA.AG.4009.01A	19	48733667	48879293	26	0.6396	SMALL-GAIN	FOCAL	6	"CARD8,CCDC114,EMP3,SYNGR4,TMEM143,ZNF114"
TCGA.AA.A01Q.01A	19	48866547	48887439	8	0.4342	SMALL-GAIN	FOCAL	3	"KDELR1,SYNGR4,TMEM143"
TCGA.AA.A00N.01A	19	49261170	49370734	31	0.4039	SMALL-GAIN	FOCAL	4	"BCAT2,FGF21,HSD17B14,PLEKHA4"
TCGA.AG.3909.01A	19	49391168	49436924	19	0.4978	SMALL-GAIN	FOCAL	2	"NUCB1,TULP2"
TCGA.AA.A00N.01A	19	49391168	49439239	21	0.6241	SMALL-GAIN	FOCAL	3	"DHDH,NUCB1,TULP2"
TCGA.AG.4009.01A	19	49633191	49671489	28	0.4653	SMALL-GAIN	FOCAL	3	"HRC,PPFIA3,TRPM4"
TCGA.AG.4009.01A	19	49713429	49814142	15	0.5148	SMALL-GAIN	FOCAL	2	"SLC6A16,TRPM4"
TCGA.AG.4009.01A	19	49862626	49934588	25	0.4231	SMALL-GAIN	FOCAL	6	"CCDC155,DKKL1,GFY,PTH2,SLC17A7,TEAD2"
TCGA.AA.A01Q.01A	19	49863089	49920237	15	0.4498	SMALL-GAIN	FOCAL	3	"CCDC155,DKKL1,TEAD2"
TCGA.AA.A02K.01A	19	49961705	49971612	11	0.4551	SMALL-GAIN	FOCAL	1	ALDH16A1
TCGA.AG.4009.01A	19	49962188	50031693	32	0.4855	SMALL-GAIN	FOCAL	6	"ALDH16A1,FCGRT,FLT3LG,RCN3,RPL13A,RPS11"
TCGA.AG.4009.01A	19	50104717	50138804	7	0.4066	SMALL-GAIN	FOCAL	2	"PRR12,RRAS"
TCGA.AG.3891.01A	19	50139849	50172051	17	0.6041	SMALL-GAIN	FOCAL	4	"BCL2L12,IRF3,RRAS,SCAF1"
TCGA.AG.A016.01A	19	50148253	50211933	36	0.484	SMALL-GAIN	FOCAL	6	"ADM5,BCL2L12,CPT1C,IRF3,PRMT1,SCAF1"
TCGA.AG.4009.01A	19	50187155	50251602	30	0.5318	SMALL-GAIN	FOCAL	4	"ADM5,CPT1C,PRMT1,TSKS"
TCGA.AG.A01W.01A	19	50263035	50270762	9	0.5194	SMALL-GAIN	FOCAL	2	"AP2A1,TSKS"
TCGA.AG.4009.01A	19	50315835	50340052	13	0.4527	SMALL-GAIN	FOCAL	2	"FUZ,MED25"
TCGA.AA.A00L.01A	19	50411998	50547877	26	0.6687	SMALL-GAIN	FOCAL	6	"ATF5,IL4I1,NUP62,SIGLEC11,VRK3,ZNF473"
TCGA.AA.A00N.01A	19	50434067	50547877	26	0.4835	SMALL-GAIN	FOCAL	4	"ATF5,SIGLEC11,VRK3,ZNF473"
TCGA.AA.A010.01A	19	50434067	50796774	69	0.6699	SMALL-GAIN	FOCAL	6	"ATF5,IZUMO2,MYH14,SIGLEC11,VRK3,ZNF473"
TCGA.AA.A01Q.01A	19	50534246	50657810	5	0.5022	SMALL-GAIN	FOCAL	2	"IZUMO2,ZNF473"
TCGA.AA.A01Q.01A	19	50733734	50823849	19	0.4893	SMALL-GAIN	FOCAL	2	"KCNC3,MYH14"
TCGA.AG.3909.01A	19	50794097	50862728	12	0.5028	SMALL-GAIN	FOCAL	3	"KCNC3,MYH14,NAPSA"
TCGA.AG.3891.01A	19	51017654	51140474	12	0.6226	SMALL-GAIN	FOCAL	3	"ASPDH,LRRC4B,SYT3"
TCGA.AG.3891.01A	19	51200807	51273817	16	0.3895	SMALL-GAIN	FOCAL	3	"CLEC11A,GPR32,SHANK1"
TCGA.AG.4009.01A	19	51227120	51446858	31	0.4014	SMALL-GAIN	FOCAL	10	"ACPT,C19orf48,CLEC11A,GPR32,KLK1,KLK15,KLK2,KLK3,KLK4,KLK5"
TCGA.AA.A00N.01A	19	51358143	51512422	37	0.661	SMALL-GAIN	FOCAL	8	"KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9"
TCGA.AG.A00C.01A	19	51525764	51585765	19	0.3827	SMALL-GAIN	FOCAL	4	"KLK11,KLK12,KLK13,KLK14"
TCGA.AA.A010.01A	19	51645635	51771737	18	0.5225	SMALL-GAIN	FOCAL	3	"CD33,SIGLEC7,SIGLECL1"
TCGA.AA.A010.01A	19	51869453	51917626	14	0.38	SMALL-GAIN	FOCAL	6	"C19orf84,CLDND2,ETFB,LIM2,NKG7,SIGLEC10"
TCGA.AG.A01W.01A	19	51908913	51922502	8	0.4053	SMALL-GAIN	FOCAL	2	"LOC100129083,SIGLEC10"
TCGA.CK.5914.01A	19	52004530	52380494	40	0.5466	SMALL-GAIN	FOCAL	10	"FPR1,FPR2,FPR3,HAS1,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,ZNF175,ZNF577"
TCGA.AM.5820	19	52195473	52236726	14	0.5385	SMALL-GAIN	FOCAL	1	HAS1
TCGA.AG.A01W.01A	19	52241641	52279393	11	0.4938	SMALL-GAIN	FOCAL	2	"FPR1,FPR2"
TCGA.AG.3909.01A	19	52249147	52403257	13	0.4373	SMALL-GAIN	FOCAL	5	"FPR1,FPR2,FPR3,ZNF577,ZNF649"
TCGA.CK.5914.01A	19	52579249	52772779	24	0.5349	SMALL-GAIN	FOCAL	4	"PPP2R1A,ZNF616,ZNF836,ZNF841"
TCGA.DY.A1DF	19	52871901	53024193	56	0.3811	SMALL-GAIN	FOCAL	4	"ZNF528,ZNF534,ZNF578,ZNF880"
TCGA.AG.A00C.01A	19	53208263	53304034	9	0.5404	SMALL-GAIN	FOCAL	3	"ZNF28,ZNF600,ZNF611"
TCGA.CK.6746	19	53680454	53708502	14	0.5306	SMALL-GAIN	FOCAL	1	ZNF665
TCGA.AG.3891.01A	19	53854224	54172358	23	0.3987	SMALL-GAIN	FOCAL	6	"DPRX,ZNF331,ZNF761,ZNF765,ZNF813,ZNF845"
TCGA.AG.A00C.01A	19	54072539	54139903	6	0.4988	SMALL-GAIN	FOCAL	2	"DPRX,ZNF331"
TCGA.AG.3611.01A	19	54137737	54327108	57	0.504	SMALL-GAIN	FOCAL	2	"DPRX,NLRP12"
TCGA.AG.3909.01A	19	54139903	54244523	38	0.6418	SMALL-GAIN	FOCAL	1	DPRX
TCGA.AA.3930.01A	19	54175167	54301449	49	0.5947	SMALL-GAIN	FOCAL	1	NLRP12
TCGA.CK.5914.01A	19	54230121	54257228	12	0.6189	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	19	54299092	54327108	10	0.5565	SMALL-GAIN	FOCAL	1	NLRP12
TCGA.AA.A00L.01A	19	54301449	54406286	22	0.4081	SMALL-GAIN	FOCAL	3	"MYADM,NLRP12,PRKCG"
TCGA.AM.5820	19	54374526	54429449	11	0.4907	SMALL-GAIN	FOCAL	3	"CACNG7,MYADM,PRKCG"
TCGA.AG.3611.01A	19	54483079	54561513	11	0.6222	SMALL-GAIN	FOCAL	3	"CACNG6,CACNG8,VSTM1"
TCGA.AG.4009.01A	19	54515168	54629870	26	0.5142	SMALL-GAIN	FOCAL	7	"CACNG6,NDUFA3,OSCAR,PRPF31,TARM1,TFPT,VSTM1"
TCGA.AG.3909.01A	19	54726138	54824188	37	0.3828	SMALL-GAIN	FOCAL	6	"LILRA3,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5"
TCGA.AG.A01W.01A	19	54840045	54852781	10	0.5156	SMALL-GAIN	FOCAL	1	LILRA4
TCGA.AG.A00C.01A	19	54932424	54973293	23	0.3958	SMALL-GAIN	FOCAL	3	"LENG8,LENG9,TTYH1"
TCGA.AG.3906.01A	19	54962450	54973293	14	0.6321	SMALL-GAIN	FOCAL	2	"LENG8,LENG9"
TCGA.AG.4009.01A	19	55014052	55239095	50	0.3822	SMALL-GAIN	FOCAL	6	"KIR3DL3,LAIR2,LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.AA.A01Q.01A	19	55143885	55179034	16	0.6032	SMALL-GAIN	FOCAL	2	"LILRB1,LILRB4"
TCGA.CI.6622	19	55302982	55360537	10	0.6221	SMALL-GAIN	FOCAL	3	"KIR2DL4,KIR2DS4,KIR3DL1"
TCGA.AG.A00C.01A	19	55421320	55512087	26	0.6496	SMALL-GAIN	FOCAL	3	"NCR1,NLRP2,NLRP7"
TCGA.CK.5914.01A	19	55696840	55739529	18	0.4908	SMALL-GAIN	FOCAL	2	"PTPRH,TMEM86B"
TCGA.AA.A00L.01A	19	55697198	55738537	16	0.5255	SMALL-GAIN	FOCAL	2	"PTPRH,TMEM86B"
TCGA.AA.A00N.01A	19	55707851	55720690	10	0.4422	SMALL-GAIN	FOCAL	1	PTPRH
TCGA.AA.A01Q.01A	19	55742717	55795759	12	0.461	SMALL-GAIN	FOCAL	3	"BRSK1,HSPBP1,PPP6R1"
TCGA.AG.4009.01A	19	56203090	56552250	67	0.4087	SMALL-GAIN	FOCAL	9	"EPN1,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,RFPL4A,RFPL4AL1"
TCGA.AA.A00N.01A	19	56226372	56564952	63	0.6369	SMALL-GAIN	FOCAL	8	"NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,RFPL4A,RFPL4AL1"
TCGA.AG.3909.01A	19	56372703	56599340	46	0.6739	SMALL-GAIN	FOCAL	5	"NLRP13,NLRP4,NLRP5,NLRP8,ZNF787"
TCGA.AG.A01W.01A	19	56527592	56537075	8	0.3922	SMALL-GAIN	FOCAL	1	NLRP5
TCGA.CK.5914.01A	19	56543947	56735985	28	0.4186	SMALL-GAIN	FOCAL	6	"GALP,NLRP5,ZNF444,ZNF787,ZSCAN5A,ZSCAN5B"
TCGA.AG.3906.01A	19	56572714	56703991	13	0.4466	SMALL-GAIN	FOCAL	5	"GALP,NLRP5,ZNF444,ZNF787,ZSCAN5B"
TCGA.AG.3909.01A	19	56670976	56703991	11	0.6152	SMALL-GAIN	FOCAL	3	"GALP,ZNF444,ZSCAN5B"
TCGA.AG.A00C.01A	19	57035645	57088043	12	0.6311	SMALL-GAIN	FOCAL	3	"ZFP28,ZNF470,ZNF471"
TCGA.AG.3909.01A	19	58325997	58427667	9	0.6227	SMALL-GAIN	FOCAL	5	"ZNF417,ZNF552,ZNF587,ZNF587B,ZNF814"
TCGA.AA.A010.01A	19	58596003	58806016	25	0.5281	SMALL-GAIN	FOCAL	5	"ZNF274,ZNF329,ZNF544,ZNF8,ZSCAN18"
TCGA.AG.4009.01A	19	58697027	58806016	15	0.493	SMALL-GAIN	FOCAL	3	"ZNF274,ZNF544,ZNF8"
TCGA.AA.A00L.01A	19	58722886	58849579	13	0.5802	SMALL-GAIN	FOCAL	4	"ZNF274,ZNF544,ZNF8,ZSCAN22"
TCGA.AA.A00K.01A	19	58966538	59082320	28	0.4811	SMALL-GAIN	FOCAL	9	"CHMP2A,MZF1,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF324,ZNF324B,ZNF446"
TCGA.AG.A01W.01A	19	59654263	59665043	12	0.3994	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	19	59735777	59836825	25	0.5077	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	19	60281198	60297805	17	0.6746	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A01W.01A	19	60716154	60858222	17	0.5433	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	20	68282	239676	12	0.4693	SMALL-GAIN	FOCAL	6	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132"
TCGA.AA.3695	20	69407	98929	7	0.6013	SMALL-GAIN	FOCAL	1	DEFB125
TCGA.CI.6621	20	69407	121975	11	0.4149	SMALL-GAIN	FOCAL	1	DEFB125
TCGA.AA.3489	20	69407	134538	15	0.582	SMALL-GAIN	FOCAL	2	"DEFB125,DEFB126"
TCGA.CL.5918	20	69407	139575	25	0.6422	SMALL-GAIN	FOCAL	3	"DEFB125,DEFB126,DEFB127"
TCGA.A6.6782	20	69407	233857	73	0.4996	SMALL-GAIN	FOCAL	5	"DEFB125,DEFB126,DEFB127,DEFB128,DEFB129"
TCGA.AY.4070	20	1340389	1473604	73	0.6073	SMALL-GAIN	FOCAL	3	"FKBP1A,NSFL1C,SIRPB2"
TCGA.AY.4070	20	1486636	1543408	37	0.6133	SMALL-GAIN	FOCAL	1	SIRPD
TCGA.DM.A1DB	20	1759589	1967876	95	0.4458	SMALL-GAIN	FOCAL	2	"PDYN,SIRPA"
TCGA.A6.6142	20	2515178	2721473	103	0.5026	SMALL-GAIN	FOCAL	4	"EBF4,IDH3B,NOP56,TMC2"
TCGA.AA.A00L.01A	20	2640103	2846811	33	0.5112	SMALL-GAIN	FOCAL	8	"C20orf141,CPXM1,EBF4,IDH3B,PCED1A,PTPRA,TMEM239,VPS16"
TCGA.AA.A00N.01A	20	2644044	2690168	5	0.4354	SMALL-GAIN	FOCAL	2	"EBF4,IDH3B"
TCGA.AG.3909.01A	20	2820388	2987941	20	0.6052	SMALL-GAIN	FOCAL	3	"PCED1A,PTPRA,VPS16"
TCGA.AA.A010.01A	20	2944859	2967373	4	0.4138	SMALL-GAIN	FOCAL	1	PTPRA
TCGA.AG.4009.01A	20	2944859	2987941	8	0.4203	SMALL-GAIN	FOCAL	1	PTPRA
TCGA.AG.4009.01A	20	3233171	3619436	61	0.5273	SMALL-GAIN	FOCAL	2	"ATRN,C20orf194"
TCGA.AA.A00N.01A	20	3262240	3605088	52	0.597	SMALL-GAIN	FOCAL	2	"ATRN,C20orf194"
TCGA.AF.3914.01A	20	3669760	3687671	17	0.4602	SMALL-GAIN	FOCAL	1	SIGLEC1
TCGA.AG.A01W.01A	20	3676813	3682996	8	0.5274	SMALL-GAIN	FOCAL	1	SIGLEC1
TCGA.AA.A00L.01A	20	3721413	3778228	17	0.4322	SMALL-GAIN	FOCAL	5	"C20orf27,CDC25B,CENPB,HSPA12B,SPEF1"
TCGA.AG.4009.01A	20	3835224	4913064	55	0.5313	SMALL-GAIN	FOCAL	9	"ADRA1D,MAVS,PANK2,PRND,PRNP,RASSF2,RNF24,SLC23A2,SMOX"
TCGA.A6.5660	20	3908735	4851841	503	0.6664	SMALL-GAIN	FOCAL	7	"ADRA1D,PRND,PRNP,RASSF2,RNF24,SLC23A2,SMOX"
TCGA.G4.6317	20	3934765	4094295	71	0.5623	SMALL-GAIN	FOCAL	1	RNF24
TCGA.D5.5541	20	4094295	4910588	449	0.505	SMALL-GAIN	FOCAL	6	"ADRA1D,PRND,PRNP,RASSF2,SLC23A2,SMOX"
TCGA.AA.3685	20	4359815	5178610	391	0.4301	SMALL-GAIN	FOCAL	7	"CDS2,PCNA,PRND,PRNP,RASSF2,SLC23A2,TMEM230"
TCGA.AA.3941	20	4403474	4461358	37	0.4367	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	4476893	4535942	30	0.4329	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	20	4705158	5093539	33	0.5433	SMALL-GAIN	FOCAL	4	"PRND,RASSF2,SLC23A2,TMEM230"
TCGA.DM.A1HA	20	4835414	5099635	89	0.5262	SMALL-GAIN	FOCAL	3	"PCNA,SLC23A2,TMEM230"
TCGA.AA.A00L.01A	20	5167292	5294506	6	0.6325	SMALL-GAIN	FOCAL	2	"CDS2,PROKR2"
TCGA.AA.A010.01A	20	5282707	5547297	9	0.6506	SMALL-GAIN	FOCAL	2	"GPCPD1,PROKR2"
TCGA.AG.3909.01A	20	5282707	5843618	23	0.6455	SMALL-GAIN	FOCAL	3	"C20orf196,GPCPD1,PROKR2"
TCGA.AA.3941	20	5317290	5335544	10	0.5312	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	20	5386159	6224404	338	0.6126	SMALL-GAIN	FOCAL	8	"C20orf196,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,TRMT6"
TCGA.AA.3685	20	5425341	5960091	209	0.474	SMALL-GAIN	FOCAL	5	"C20orf196,CHGB,GPCPD1,MCM8,TRMT6"
TCGA.G4.6317	20	5598671	7118591	691	0.5879	SMALL-GAIN	FOCAL	8	"BMP2,C20orf196,CHGB,CRLS1,FERMT1,LRRN4,MCM8,TRMT6"
TCGA.AA.A010.01A	20	5753471	5953655	27	0.65	SMALL-GAIN	FOCAL	4	"C20orf196,CHGB,MCM8,TRMT6"
TCGA.AG.3909.01A	20	6032754	8608891	35	0.6136	SMALL-GAIN	FOCAL	6	"BMP2,FERMT1,HAO1,LRRN4,PLCB1,TMX4"
TCGA.D5.5541	20	6075509	7870721	806	0.5469	SMALL-GAIN	FOCAL	3	"BMP2,FERMT1,HAO1"
TCGA.DM.A1HA	20	6138414	6436146	136	0.4993	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	6148260	6544656	167	0.3922	SMALL-GAIN	FOCAL	0	None
TCGA.AY.A69D	20	6427131	8848723	1107	0.4916	SMALL-GAIN	FOCAL	4	"BMP2,HAO1,PLCB1,TMX4"
TCGA.AA.3941	20	6557906	6593581	21	0.6085	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	20	6559148	6601731	23	0.4924	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	20	6612831	6932759	167	0.388	SMALL-GAIN	FOCAL	1	BMP2
TCGA.A6.5656	20	6651035	7133038	240	0.4706	SMALL-GAIN	FOCAL	1	BMP2
TCGA.AA.3941	20	6711862	6932759	98	0.5072	SMALL-GAIN	FOCAL	1	BMP2
TCGA.DM.A28M.01A	20	7886749	9389662	68	0.4714	SMALL-GAIN	FOCAL	4	"HAO1,PLCB1,PLCB4,TMX4"
TCGA.AA.3941	20	7920603	8646448	293	0.4536	SMALL-GAIN	FOCAL	3	"HAO1,PLCB1,TMX4"
TCGA.DC.4749	20	7985375	8572224	248	0.3823	SMALL-GAIN	FOCAL	2	"PLCB1,TMX4"
TCGA.D5.5541	20	8133576	8727503	264	0.6246	SMALL-GAIN	FOCAL	1	PLCB1
TCGA.DM.A1HA	20	8401715	9657562	595	0.5479	SMALL-GAIN	FOCAL	4	"LAMP5,PAK7,PLCB1,PLCB4"
TCGA.AA.A00N.01A	20	8665529	9346044	31	0.664	SMALL-GAIN	FOCAL	2	"PLCB1,PLCB4"
TCGA.AA.3941	20	9053119	9208345	38	0.4737	SMALL-GAIN	FOCAL	1	PLCB4
TCGA.AA.3941	20	9282256	9685975	189	0.57	SMALL-GAIN	FOCAL	3	"LAMP5,PAK7,PLCB4"
TCGA.AG.3909.01A	20	9317717	9352908	7	0.4024	SMALL-GAIN	FOCAL	1	PLCB4
TCGA.DC.6157	20	9333615	9371824	13	0.671	SMALL-GAIN	FOCAL	1	PLCB4
TCGA.DC.6157	20	9372203	9491530	49	0.3817	SMALL-GAIN	FOCAL	1	PLCB4
TCGA.AA.A00N.01A	20	9382100	9560824	31	0.4058	SMALL-GAIN	FOCAL	3	"LAMP5,PAK7,PLCB4"
TCGA.CM.5868	20	9684244	10329346	328	0.5644	SMALL-GAIN	FOCAL	3	"ANKEF1,PAK7,SNAP25"
TCGA.AA.3941	20	9708592	9835961	77	0.5302	SMALL-GAIN	FOCAL	1	PAK7
TCGA.AA.3941	20	9855235	9988212	47	0.4477	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	9989827	10184603	104	0.6569	SMALL-GAIN	FOCAL	1	ANKEF1
TCGA.AG.4009.01A	20	10033713	10286710	11	0.4306	SMALL-GAIN	FOCAL	2	"ANKEF1,SNAP25"
TCGA.AG.4009.01A	20	10393188	10636989	27	0.4363	SMALL-GAIN	FOCAL	3	"JAG1,MKKS,SLX4IP"
TCGA.AA.3941	20	10692200	11022872	151	0.4095	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	11056616	11064649	10	0.5715	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3882	20	11138436	11565455	213	0.6088	SMALL-GAIN	FOCAL	0	None
TCGA.CM.5868	20	11207206	14863546	1349	0.574	SMALL-GAIN	FOCAL	9	"BTBD3,ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3941	20	11497271	12092869	212	0.5695	SMALL-GAIN	FOCAL	1	BTBD3
TCGA.AA.3982	20	11505816	12385298	323	0.3911	SMALL-GAIN	FOCAL	1	BTBD3
TCGA.AA.3955	20	11602357	12338619	268	0.6042	SMALL-GAIN	FOCAL	1	BTBD3
TCGA.DC.4745	20	11730487	11887965	52	0.403	SMALL-GAIN	FOCAL	1	BTBD3
TCGA.AD.A5EK	20	11955658	12041677	33	0.3978	SMALL-GAIN	FOCAL	0	None
TCGA.G4.6317	20	11965354	14771471	1017	0.5476	SMALL-GAIN	FOCAL	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.A6.5656	20	11975842	14718195	991	0.4462	SMALL-GAIN	FOCAL	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3941	20	12220605	12398728	95	0.5027	SMALL-GAIN	FOCAL	0	None
TCGA.AD.A5EK	20	12481749	12760187	156	0.4849	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	12533538	12579209	13	0.6512	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	12597657	12632734	17	0.5154	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	20	12653619	12709061	44	0.3912	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3872	20	12653619	14917047	774	0.3803	SMALL-GAIN	FOCAL	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3941	20	12654923	12723854	48	0.4758	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3728	20	12654923	14622994	669	0.6056	SMALL-GAIN	FOCAL	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3982	20	12725485	14189778	498	0.3906	SMALL-GAIN	FOCAL	7	"ESF1,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3941	20	13019358	13225411	102	0.4677	SMALL-GAIN	FOCAL	2	"ISM1,SPTLC3"
TCGA.D5.7000	20	13034997	14644378	466	0.3811	SMALL-GAIN	FOCAL	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.DM.A1DB	20	13435156	14527806	243	0.4493	SMALL-GAIN	FOCAL	6	"ESF1,FLRT3,MACROD2,NDUFAF5,SEL1L2,TASP1"
TCGA.AA.A00N.01A	20	13765678	17492571	102	0.4534	SMALL-GAIN	FOCAL	9	"BFSP1,FLRT3,KIF16B,MACROD2,NDUFAF5,OTOR,PCSK2,SEL1L2,SNRPB2"
TCGA.EI.6513	20	13788171	13963727	44	0.451	SMALL-GAIN	FOCAL	2	"NDUFAF5,SEL1L2"
TCGA.G4.6625	20	13838892	13910932	19	0.604	SMALL-GAIN	FOCAL	1	SEL1L2
TCGA.A6.2679	20	13899071	14408089	108	0.4346	SMALL-GAIN	FOCAL	3	"FLRT3,MACROD2,SEL1L2"
TCGA.G4.6626	20	14111359	14705887	167	0.6304	SMALL-GAIN	FOCAL	2	"FLRT3,MACROD2"
TCGA.A6.2675	20	14163978	14660943	140	0.6029	SMALL-GAIN	FOCAL	2	"FLRT3,MACROD2"
TCGA.AA.3982	20	14205047	14348025	37	0.4528	SMALL-GAIN	FOCAL	2	"FLRT3,MACROD2"
TCGA.AA.3968	20	14224536	14372311	40	0.3996	SMALL-GAIN	FOCAL	2	"FLRT3,MACROD2"
TCGA.EI.6508	20	14346507	14641671	85	0.4066	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3971	20	14417196	14782741	119	0.4962	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.G4.6294	20	14593866	14758472	53	0.434	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.CK.6746	20	14641671	14698299	25	0.4872	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3941	20	14662720	14865155	64	0.4659	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.DC.4745	20	14702914	14762970	17	0.6671	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3688	20	14728971	15082545	139	0.4391	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.5M.AATE	20	14745197	15159549	182	0.6137	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.CA.6715	20	14762970	14816381	14	0.4803	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.CA.6715	20	14823471	14973776	57	0.4203	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.G4.6317	20	14837327	16464675	916	0.5016	SMALL-GAIN	FOCAL	2	"KIF16B,MACROD2"
TCGA.G4.6310	20	14887229	14922359	25	0.5182	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.D5.6923	20	14895952	16472824	902	0.4076	SMALL-GAIN	FOCAL	2	"KIF16B,MACROD2"
TCGA.DM.A0X9	20	14923389	15007063	14	0.5055	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3941	20	14948624	15078723	55	0.5642	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.CA.6715	20	15037064	15216194	98	0.4852	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.F5.6465	20	15037614	16662217	964	0.5982	SMALL-GAIN	FOCAL	2	"KIF16B,MACROD2"
TCGA.DM.A28F	20	15052513	15101463	36	0.5696	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.A6.6652	20	15057509	15111137	37	0.4076	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3941	20	15086276	15965918	490	0.3914	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3971	20	15122577	15160751	20	0.3818	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3688	20	15150729	15564113	207	0.4971	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.DM.A28F	20	15219499	15406912	84	0.3954	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AH.6897	20	15228294	15346466	39	0.6329	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3971	20	15230950	15235423	3	0.5435	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3956	20	15239468	15352685	32	0.4353	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.EI.6514	20	15299478	15400289	46	0.6645	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.DM.A1DB	20	15404289	17611776	1254	0.3969	SMALL-GAIN	FOCAL	8	"BFSP1,DSTN,KIF16B,MACROD2,OTOR,PCSK2,RRBP1,SNRPB2"
TCGA.AG.4015	20	15512551	15761191	168	0.6534	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3982	20	15515475	15543367	32	0.4635	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3982	20	15560373	15721258	108	0.5005	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3982	20	15734758	15765166	15	0.62	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3982	20	15785800	17244950	841	0.4474	SMALL-GAIN	FOCAL	5	"KIF16B,MACROD2,OTOR,PCSK2,SNRPB2"
TCGA.G4.6626	20	15983050	16031256	37	0.6171	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.AA.3941	20	16023835	16078327	40	0.4711	SMALL-GAIN	FOCAL	1	MACROD2
TCGA.DC.6157	20	16336693	16340835	5	0.4938	SMALL-GAIN	FOCAL	1	KIF16B
TCGA.AA.3941	20	16813686	16899109	33	0.4996	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3869	20	16824360	17084200	130	0.4073	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	16905328	17055513	72	0.5837	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	17075243	17244950	80	0.4136	SMALL-GAIN	FOCAL	1	PCSK2
TCGA.AA.3982	20	17254293	17371508	56	0.5469	SMALL-GAIN	FOCAL	1	PCSK2
TCGA.AA.3941	20	17259591	17264603	5	0.5677	SMALL-GAIN	FOCAL	1	PCSK2
TCGA.AG.A01W.01A	20	17542747	17549315	9	0.4585	SMALL-GAIN	FOCAL	1	BFSP1
TCGA.AA.3941	20	18261601	18302028	18	0.4438	SMALL-GAIN	FOCAL	1	ZNF133
TCGA.AA.A00N.01A	20	18286281	19566035	71	0.4562	SMALL-GAIN	FOCAL	9	"C20orf78,DTD1,DZANK1,POLR3F,RBBP9,SCP2D1,SEC23B,SLC24A3,ZNF133"
TCGA.AG.3909.01A	20	18286281	19566035	68	0.659	SMALL-GAIN	FOCAL	9	"C20orf78,DTD1,DZANK1,POLR3F,RBBP9,SCP2D1,SEC23B,SLC24A3,ZNF133"
TCGA.AA.3660	20	18783520	19384461	268	0.3797	SMALL-GAIN	FOCAL	3	"C20orf78,SCP2D1,SLC24A3"
TCGA.AG.3909.01A	20	19673871	19981256	16	0.537	SMALL-GAIN	FOCAL	2	"RIN2,SLC24A3"
TCGA.DY.A1DG	20	19836216	20900045	436	0.6271	SMALL-GAIN	FOCAL	6	"CFAP61,CRNKL1,INSM1,NAA20,RALGAPA2,RIN2"
TCGA.AG.A00C.01A	20	19915696	20022928	22	0.6524	SMALL-GAIN	FOCAL	3	"CRNKL1,NAA20,RIN2"
TCGA.AA.A00N.01A	20	20022138	21349064	113	0.4983	SMALL-GAIN	FOCAL	6	"CFAP61,CRNKL1,INSM1,KIZ,RALGAPA2,XRN2"
TCGA.CM.5868	20	20083948	20604695	166	0.5586	SMALL-GAIN	FOCAL	3	"CFAP61,INSM1,RALGAPA2"
TCGA.CK.5914.01A	20	20527299	20582279	9	0.4328	SMALL-GAIN	FOCAL	1	RALGAPA2
TCGA.AA.3697	20	20939693	21875727	248	0.5776	SMALL-GAIN	FOCAL	5	"KIZ,NKX2-2,NKX2-4,PAX1,XRN2"
TCGA.AA.A01S	20	21302884	21809408	105	0.49215	SMALL-GAIN	FOCAL	4	"NKX2-2,NKX2-4,PAX1,XRN2"
TCGA.AG.4009.01A	20	21309150	21349064	18	0.504	SMALL-GAIN	FOCAL	1	XRN2
TCGA.CM.6679	20	21429847	22648416	390	0.55735	SMALL-GAIN	FOCAL	3	"FOXA2,NKX2-2,PAX1"
TCGA.AY.4071	20	21671675	22775230	408	0.6569	SMALL-GAIN	FOCAL	2	"FOXA2,PAX1"
TCGA.AA.3955	20	21967949	23439121	652	0.4057	SMALL-GAIN	FOCAL	9	"CD93,CST11,CSTL1,FOXA2,GZF1,NAPB,NXT1,SSTR4,THBD"
TCGA.A6.2678	20	22462169	22528133	34	0.5225	SMALL-GAIN	FOCAL	0	None
TCGA.DC.6154	20	23035103	23245160	106	0.6508	SMALL-GAIN	FOCAL	1	CD93
TCGA.CM.6170	20	23071030	23271261	109	0.678	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	20	23370529	23666476	22	0.5603	SMALL-GAIN	FOCAL	8	"CST11,CST3,CST4,CST8,CST9,CST9L,CSTL1,NAPB"
TCGA.AG.A01W.01A	20	23493532	23563841	7	0.5082	SMALL-GAIN	FOCAL	1	CST9L
TCGA.AA.3982	20	23578939	24159526	251	0.6512	SMALL-GAIN	FOCAL	7	"CST1,CST2,CST3,CST4,CST5,CST9,GGTLC1"
TCGA.AG.3909.01A	20	23965805	24930024	7	0.6747	SMALL-GAIN	FOCAL	3	"CST7,GGTLC1,SYNDIG1"
TCGA.AA.3941	20	24158050	24314056	72	0.4548	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00N.01A	20	24565450	25027394	28	0.4609	SMALL-GAIN	FOCAL	4	"ACSS1,APMAP,CST7,SYNDIG1"
TCGA.AM.5820	20	24713822	25253237	199	0.5389	SMALL-GAIN	FOCAL	6	"ACSS1,APMAP,CST7,ENTPD6,PYGB,VSX1"
TCGA.AD.A5EK	20	25141576	26289924	156	0.4572	SMALL-GAIN	FOCAL	7	"ABHD12,ENTPD6,GINS1,NANP,NINL,PYGB,ZNF337"
TCGA.AG.4009.01A	20	25187108	25666941	82	0.5237	SMALL-GAIN	FOCAL	7	"ABHD12,ENTPD6,GINS1,NANP,NINL,PYGB,ZNF337"
TCGA.A6.5656	20	25272632	25858430	82	0.4646	SMALL-GAIN	FOCAL	6	"ABHD12,GINS1,NANP,NINL,PYGB,ZNF337"
TCGA.AA.A00D.01A	20	25282808	25422286	17	0.4041	SMALL-GAIN	FOCAL	2	"ABHD12,GINS1"
TCGA.AM.5820	20	25329914	25397256	9	0.5838	SMALL-GAIN	FOCAL	2	"ABHD12,GINS1"
TCGA.AA.3844	20	25593870	30029511	119	0.4149	SMALL-GAIN	FOCAL	8	"DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,NANP,ZNF337"
TCGA.AG.A01W.01A	20	25614686	29895993	76	0.3915	SMALL-GAIN	FOCAL	3	"DEFB115,DEFB116,ZNF337"
TCGA.AA.3941	20	25705105	29998984	97	0.5216	SMALL-GAIN	FOCAL	5	"DEFB115,DEFB116,DEFB118,DEFB119,DEFB121"
TCGA.AA.3982	20	25738763	29992250	84	0.6554	SMALL-GAIN	FOCAL	4	"DEFB115,DEFB116,DEFB118,DEFB119"
TCGA.AA.3867	20	25844992	26192654	26	0.4181	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A026	20	25846493	25978362	12	0.5003	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4022	20	25846493	26072581	15	0.4123	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3841	20	25849037	26153525	21	0.4827	SMALL-GAIN	FOCAL	0	None
TCGA.A6.5656	20	25978362	29529824	24	0.4437	SMALL-GAIN	FOCAL	0	None
TCGA.T9.A92H	20	26129446	29586146	24	0.609	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	20	29890988	29978160	8	0.447	SMALL-GAIN	FOCAL	3	"DEFB116,DEFB118,DEFB119"
TCGA.AA.A00D.01A	20	30070041	30155870	11	0.4557	SMALL-GAIN	FOCAL	2	"HM13,REM1"
TCGA.AG.3906.01A	20	30071945	30474933	53	0.5299	SMALL-GAIN	FOCAL	10	"BCL2L1,COX4I2,DUSP15,FOXS1,HM13,ID1,MYLK2,REM1,TPX2,TTLL9"
TCGA.CK.5914.01A	20	30534240	30538052	3	0.3839	SMALL-GAIN	FOCAL	1	PDRG1
TCGA.AA.A00D.01A	20	30555948	30822235	45	0.4888	SMALL-GAIN	FOCAL	6	"CCM2L,HCK,PLAGL2,POFUT1,TM9SF4,XKR7"
TCGA.AA.A010.01A	20	30618796	30697460	15	0.4096	SMALL-GAIN	FOCAL	3	"CCM2L,HCK,TM9SF4"
TCGA.AA.A00N.01A	20	30640161	30747753	28	0.5466	SMALL-GAIN	FOCAL	2	"HCK,TM9SF4"
TCGA.AG.A01W.01A	20	30779311	31071732	76	0.3956	SMALL-GAIN	FOCAL	5	"ASXL1,KIF3B,NOL4L,PLAGL2,POFUT1"
TCGA.CK.5914.01A	20	30947472	31074452	23	0.6589	SMALL-GAIN	FOCAL	2	"ASXL1,NOL4L"
TCGA.A6.2675	20	31028126	31676803	188	0.5678	SMALL-GAIN	FOCAL	10	"BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf203,COMMD7,DNMT3B,MAPRE1,NOL4L,SUN5"
TCGA.AA.A00D.01A	20	31040660	31386991	20	0.5715	SMALL-GAIN	FOCAL	4	"C20orf203,COMMD7,DNMT3B,NOL4L"
TCGA.AA.A010.01A	20	31238247	31294327	7	0.4029	SMALL-GAIN	FOCAL	2	"C20orf203,COMMD7"
TCGA.A6.3808.01A	20	31315682	31596330	67	0.4013	SMALL-GAIN	FOCAL	5	"BPIFB2,COMMD7,DNMT3B,MAPRE1,SUN5"
TCGA.AG.3906.01A	20	31367860	31386991	14	0.4006	SMALL-GAIN	FOCAL	1	DNMT3B
TCGA.AA.A01Q.01A	20	31427489	31548951	8	0.429	SMALL-GAIN	FOCAL	1	MAPRE1
TCGA.AA.A00D.01A	20	31507836	31948105	110	0.4294	SMALL-GAIN	FOCAL	10	"BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,CDK5RAP1,SUN5"
TCGA.AA.A00Q.01A	20	31587680	31659844	45	0.5638	SMALL-GAIN	FOCAL	4	"BPIFB2,BPIFB3,BPIFB6,SUN5"
TCGA.AG.A016.01A	20	31626645	31661299	22	0.6246	SMALL-GAIN	FOCAL	2	"BPIFB3,BPIFB6"
TCGA.AG.3909.01A	20	31688169	31768258	12	0.5517	SMALL-GAIN	FOCAL	2	"BPIFA2,BPIFB4"
TCGA.AG.A00C.01A	20	31887670	31961869	15	0.5124	SMALL-GAIN	FOCAL	2	"BPIFB1,CDK5RAP1"
TCGA.CK.5914.01A	20	31973407	31984518	6	0.3951	SMALL-GAIN	FOCAL	1	CDK5RAP1
TCGA.AA.A01Q.01A	20	31996258	32232126	16	0.4753	SMALL-GAIN	FOCAL	2	"CBFA2T2,SNTA1"
TCGA.AG.3906.01A	20	31996258	32257129	21	0.4188	SMALL-GAIN	FOCAL	5	"ACTL10,C20orf144,CBFA2T2,NECAB3,SNTA1"
TCGA.AG.A00C.01A	20	31996258	32664802	57	0.4213	SMALL-GAIN	FOCAL	10	"ACTL10,C20orf144,CBFA2T2,CHMP4B,E2F1,NECAB3,PXMP4,RALY,SNTA1,ZNF341"
TCGA.A6.2675	20	32056086	32140463	10	0.4107	SMALL-GAIN	FOCAL	1	CBFA2T2
TCGA.AG.4009.01A	20	32194715	32248013	13	0.5777	SMALL-GAIN	FOCAL	2	"CBFA2T2,NECAB3"
TCGA.AA.3984	20	32218612	32503059	54	0.6329	SMALL-GAIN	FOCAL	8	"ACTL10,C20orf144,CBFA2T2,CHMP4B,E2F1,NECAB3,PXMP4,ZNF341"
TCGA.AG.4009.01A	20	32307860	32438706	17	0.4678	SMALL-GAIN	FOCAL	3	"CHMP4B,PXMP4,ZNF341"
TCGA.CK.5914.01A	20	33045156	33068823	9	0.3787	SMALL-GAIN	FOCAL	1	ITCH
TCGA.AG.4009.01A	20	33057791	33077580	8	0.4074	SMALL-GAIN	FOCAL	1	ITCH
TCGA.AA.A010.01A	20	33092085	33117587	6	0.4754	SMALL-GAIN	FOCAL	2	"DYNLRB1,ITCH"
TCGA.AA.A01Q.01A	20	33169305	33451079	39	0.4227	SMALL-GAIN	FOCAL	4	"GGT7,NCOA6,PIGU,TP53INP2"
TCGA.AA.A010.01A	20	33337195	33539490	50	0.5477	SMALL-GAIN	FOCAL	4	"ACSS2,GGT7,GSS,NCOA6"
TCGA.AG.3909.01A	20	33433131	33442280	5	0.5398	SMALL-GAIN	FOCAL	1	GGT7
TCGA.AM.5820	20	33488770	33611737	29	0.6271	SMALL-GAIN	FOCAL	4	"ACSS2,GSS,MYH7B,TRPC4AP"
TCGA.AA.A00N.01A	20	33507186	33539490	19	0.5942	SMALL-GAIN	FOCAL	2	"ACSS2,GSS"
TCGA.A6.5660	20	33529765	33835772	79	0.3893	SMALL-GAIN	FOCAL	6	"EDEM2,GSS,MMP24,MYH7B,PROCR,TRPC4AP"
TCGA.AG.4009.01A	20	33573866	33851552	52	0.562	SMALL-GAIN	FOCAL	5	"EDEM2,MMP24,MYH7B,PROCR,TRPC4AP"
TCGA.AG.A01W.01A	20	33607170	33668422	4	0.5982	SMALL-GAIN	FOCAL	1	TRPC4AP
TCGA.AA.A00N.01A	20	33608941	33725641	15	0.5182	SMALL-GAIN	FOCAL	2	"EDEM2,TRPC4AP"
TCGA.AA.A01Q.01A	20	33608941	33862113	27	0.4566	SMALL-GAIN	FOCAL	4	"EDEM2,MMP24,PROCR,TRPC4AP"
TCGA.AG.A01W.01A	20	33681710	33720890	8	0.5836	SMALL-GAIN	FOCAL	1	EDEM2
TCGA.AG.A01W.01A	20	33755786	33783247	12	0.5584	SMALL-GAIN	FOCAL	1	PROCR
TCGA.A6.2675	20	33804220	33907908	25	0.6405	SMALL-GAIN	FOCAL	4	"EIF6,FAM83C,MMP24,UQCC1"
TCGA.AM.5820	20	33839938	34194810	70	0.52	SMALL-GAIN	FOCAL	8	"C20orf173,CEP250,EIF6,ERGIC3,FAM83C,GDF5,MMP24,UQCC1"
TCGA.AA.A00N.01A	20	33934877	33999665	8	0.5851	SMALL-GAIN	FOCAL	1	UQCC1
TCGA.AA.A00L.01A	20	34142051	34207472	13	0.5238	SMALL-GAIN	FOCAL	2	"ERGIC3,SPAG4"
TCGA.CK.5914.01A	20	34240429	34297115	21	0.5476	SMALL-GAIN	FOCAL	5	"CPNE1,NFS1,RBM12,RBM39,ROMO1"
TCGA.AA.A00N.01A	20	34326816	34535388	22	0.4384	SMALL-GAIN	FOCAL	2	"PHF20,RBM39"
TCGA.AA.A010.01A	20	34328387	34560500	23	0.6325	SMALL-GAIN	FOCAL	4	"CNBD2,PHF20,RBM39,SCAND1"
TCGA.AG.3898	20	34467468	34497659	11	0.6529	SMALL-GAIN	FOCAL	1	PHF20
TCGA.AG.4009.01A	20	34571864	34599021	6	0.4641	SMALL-GAIN	FOCAL	1	CNBD2
TCGA.A6.2675	20	34593557	35284996	102	0.5442	SMALL-GAIN	FOCAL	10	"AAR2,C20orf24,CNBD2,DLGAP4,EPB41L1,MYL9,NDRG3,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.AM.5820	20	34676885	35179495	71	0.6618	SMALL-GAIN	FOCAL	4	"AAR2,DLGAP4,EPB41L1,MYL9"
TCGA.DM.A285	20	34686074	35068017	60	0.6526	SMALL-GAIN	FOCAL	3	"AAR2,DLGAP4,EPB41L1"
TCGA.AA.A00N.01A	20	34761668	35068130	28	0.6084	SMALL-GAIN	FOCAL	3	"AAR2,DLGAP4,EPB41L1"
TCGA.AA.A00D.01A	20	34761668	35071057	28	0.4184	SMALL-GAIN	FOCAL	3	"AAR2,DLGAP4,EPB41L1"
TCGA.AA.A00L.01A	20	35060081	35090887	7	0.4402	SMALL-GAIN	FOCAL	1	DLGAP4
TCGA.CK.5914.01A	20	35284707	35399748	23	0.5325	SMALL-GAIN	FOCAL	2	"DSN1,NDRG3"
TCGA.AA.A010.01A	20	35396319	35457406	18	0.499	SMALL-GAIN	FOCAL	2	"DSN1,SOGA1"
TCGA.AG.3891.01A	20	35414836	35504493	14	0.5121	SMALL-GAIN	FOCAL	1	SOGA1
TCGA.AA.3509.01A	20	35421660	35509016	19	0.3905	SMALL-GAIN	FOCAL	2	"SOGA1,TLDC2"
TCGA.AG.3909.01A	20	35431212	35445745	8	0.5472	SMALL-GAIN	FOCAL	1	SOGA1
TCGA.AA.A00D.01A	20	35443522	35539583	13	0.5643	SMALL-GAIN	FOCAL	3	"SAMHD1,SOGA1,TLDC2"
TCGA.CK.5914.01A	20	35627122	35802381	43	0.588	SMALL-GAIN	FOCAL	2	"MROH8,RBL1"
TCGA.AG.3906.01A	20	35646626	35731049	18	0.5896	SMALL-GAIN	FOCAL	2	"MROH8,RBL1"
TCGA.AA.A010.01A	20	35668505	35724138	13	0.4262	SMALL-GAIN	FOCAL	1	RBL1
TCGA.AG.4009.01A	20	35787267	35800267	4	0.5237	SMALL-GAIN	FOCAL	1	MROH8
TCGA.AM.5820	20	35801807	36444875	183	0.5066	SMALL-GAIN	FOCAL	8	"BLCAP,CTNNBL1,GHRH,MANBAL,MROH8,NNAT,RPN2,SRC"
TCGA.AA.A010.01A	20	35802381	35930596	26	0.4628	SMALL-GAIN	FOCAL	4	"GHRH,MANBAL,MROH8,RPN2"
TCGA.AA.A00N.01A	20	35807584	35929629	24	0.6201	SMALL-GAIN	FOCAL	4	"GHRH,MANBAL,MROH8,RPN2"
TCGA.AG.A00C.01A	20	35944661	36150730	13	0.6526	SMALL-GAIN	FOCAL	4	"BLCAP,MANBAL,NNAT,SRC"
TCGA.AG.A00C.01A	20	36560010	36676708	14	0.6271	SMALL-GAIN	FOCAL	3	"RPRD1B,TTI1,VSTM2L"
TCGA.AG.3909.01A	20	36766436	36793495	10	0.5371	SMALL-GAIN	FOCAL	1	TGM2
TCGA.AA.A00Q.01A	20	36767764	36850809	14	0.4596	SMALL-GAIN	FOCAL	2	"KIAA1755,TGM2"
TCGA.EI.7002	20	36950745	36992809	29	0.413	SMALL-GAIN	FOCAL	2	"BPI,LBP"
TCGA.AA.A01Q.01A	20	36952233	36995353	17	0.5851	SMALL-GAIN	FOCAL	2	"BPI,LBP"
TCGA.AG.3909.01A	20	36982652	36999317	8	0.5484	SMALL-GAIN	FOCAL	1	LBP
TCGA.AA.3815.01A	20	36992578	37001661	7	0.5101	SMALL-GAIN	FOCAL	1	LBP
TCGA.AA.A010.01A	20	37137678	37153394	5	0.4749	SMALL-GAIN	FOCAL	1	RALGAPB
TCGA.AG.3909.01A	20	37153394	37154496	3	0.546	SMALL-GAIN	FOCAL	1	RALGAPB
TCGA.AG.4009.01A	20	37153394	37168390	7	0.6335	SMALL-GAIN	FOCAL	1	RALGAPB
TCGA.AG.A00C.01A	20	37154496	37377082	23	0.3905	SMALL-GAIN	FOCAL	4	"ADIG,ARHGAP40,RALGAPB,SLC32A1"
TCGA.AA.A010.01A	20	37209857	37279242	19	0.5811	SMALL-GAIN	FOCAL	2	"ADIG,ARHGAP40"
TCGA.AG.3909.01A	20	37216716	37612282	30	0.3788	SMALL-GAIN	FOCAL	7	"ACTR5,ADIG,ARHGAP40,DHX35,FAM83D,PPP1R16B,SLC32A1"
TCGA.AA.3982	20	37361503	37460461	29	0.6451	SMALL-GAIN	FOCAL	2	"ACTR5,PPP1R16B"
TCGA.AG.4009.01A	20	37384468	37394017	2	0.5484	SMALL-GAIN	FOCAL	1	ACTR5
TCGA.AA.A00D.01A	20	37620962	39704769	21	0.5573	SMALL-GAIN	FOCAL	3	"DHX35,MAFB,TOP1"
TCGA.AG.3909.01A	20	37659286	39689982	7	0.6381	SMALL-GAIN	FOCAL	3	"DHX35,MAFB,TOP1"
TCGA.AA.3811	20	37748569	41594024	1586	0.4108	SMALL-GAIN	FOCAL	8	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,PTPRT,TOP1,ZHX3"
TCGA.AA.3941	20	37759894	38227760	174	0.5099	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5912	20	37775430	38469220	300	0.4463	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	20	37908953	41072289	1240	0.5738	SMALL-GAIN	FOCAL	8	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,PTPRT,TOP1,ZHX3"
TCGA.AD.A5EK	20	38066903	38342642	153	0.4279	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	38261717	38309545	48	0.609	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	38342642	38510375	66	0.5487	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	38523618	38622280	32	0.5191	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	38692809	39003883	104	0.4709	SMALL-GAIN	FOCAL	0	None
TCGA.G4.6310	20	39036536	39038827	3	0.442	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3611.01A	20	39689982	39713081	6	0.6336	SMALL-GAIN	FOCAL	1	TOP1
TCGA.AA.A00D.01A	20	39791046	42213444	106	0.4592	SMALL-GAIN	FOCAL	9	"CHD6,EMILIN3,L3MBTL1,LPIN3,PLCG1,PTPRT,SGK2,SRSF6,ZHX3"
TCGA.AA.A010.01A	20	39794847	39830656	13	0.4397	SMALL-GAIN	FOCAL	2	"PLCG1,ZHX3"
TCGA.AG.3909.01A	20	39976162	39993623	16	0.4638	SMALL-GAIN	FOCAL	2	"EMILIN3,LPIN3"
TCGA.AA.A010.01A	20	40033195	40045211	5	0.5589	SMALL-GAIN	FOCAL	1	CHD6
TCGA.AG.3742	20	40468621	42093122	831	0.6398	SMALL-GAIN	FOCAL	2	"PTPRT,SRSF6"
TCGA.AA.A010.01A	20	40710485	42208560	65	0.4131	SMALL-GAIN	FOCAL	4	"L3MBTL1,PTPRT,SGK2,SRSF6"
TCGA.AA.3941	20	40816876	41175614	175	0.4749	SMALL-GAIN	FOCAL	1	PTPRT
TCGA.AA.3982	20	41075395	41175614	49	0.3888	SMALL-GAIN	FOCAL	1	PTPRT
TCGA.AA.3982	20	41181472	41285977	67	0.5335	SMALL-GAIN	FOCAL	1	PTPRT
TCGA.AA.3941	20	41187458	41514540	218	0.653	SMALL-GAIN	FOCAL	1	PTPRT
TCGA.AA.3982	20	41290935	41436908	110	0.5328	SMALL-GAIN	FOCAL	1	PTPRT
TCGA.AA.3982	20	41454326	41558123	52	0.4297	SMALL-GAIN	FOCAL	1	PTPRT
TCGA.T9.A92H	20	41585516	41673334	30	0.4465	SMALL-GAIN	FOCAL	1	PTPRT
TCGA.AA.3844	20	41597570	41739756	54	0.5093	SMALL-GAIN	FOCAL	1	PTPRT
TCGA.AA.A00N.01A	20	42157265	42213444	25	0.4625	SMALL-GAIN	FOCAL	2	"L3MBTL1,SGK2"
TCGA.AG.3909.01A	20	42208560	42213444	2	0.426	SMALL-GAIN	FOCAL	1	SGK2
TCGA.AA.A00L.01A	20	42574512	42743380	10	0.6281	SMALL-GAIN	FOCAL	2	"JPH2,TOX2"
TCGA.AG.3909.01A	20	42893136	43142505	34	0.6264	SMALL-GAIN	FOCAL	7	"C20orf62,FITM2,GDAP1L1,HNF4A,R3HDML,SERINC3,TTPAL"
TCGA.AA.A010.01A	20	43530135	43681672	39	0.5812	SMALL-GAIN	FOCAL	4	"PABPC1L,STK4,TOMM34,YWHAB"
TCGA.AA.A00N.01A	20	43545345	43567258	11	0.6034	SMALL-GAIN	FOCAL	1	PABPC1L
TCGA.AA.A00N.01A	20	43623703	43703627	7	0.4542	SMALL-GAIN	FOCAL	1	STK4
TCGA.AA.3982	20	43834090	43908693	31	0.4219	SMALL-GAIN	FOCAL	3	"SEMG1,SEMG2,SLPI"
TCGA.AG.4009.01A	20	43929509	43964374	14	0.6068	SMALL-GAIN	FOCAL	3	"MATN4,RBPJL,SDC4"
TCGA.AG.3909.01A	20	43964374	44099012	20	0.5727	SMALL-GAIN	FOCAL	6	"DBNDD2,PIGT,SDC4,SYS1,TP53TG5,WFDC2"
TCGA.AG.3909.01A	20	44441993	44520528	29	0.6505	SMALL-GAIN	FOCAL	9	"ACOT8,CTSA,NEURL2,SNX21,SPATA25,TNNC2,UBE2C,ZSWIM1,ZSWIM3"
TCGA.AG.3611.01A	20	44506062	44526312	15	0.5718	SMALL-GAIN	FOCAL	5	"CTSA,NEURL2,SPATA25,ZSWIM1,ZSWIM3"
TCGA.AG.4009.01A	20	44698849	44707943	2	0.6199	SMALL-GAIN	FOCAL	1	NCOA5
TCGA.AG.3909.01A	20	44746922	45173965	50	0.4331	SMALL-GAIN	FOCAL	6	"CD40,CDH22,ELMO2,OCSTAMP,SLC35C2,ZNF334"
TCGA.AA.A010.01A	20	44828045	45001993	21	0.3946	SMALL-GAIN	FOCAL	3	"CDH22,ELMO2,SLC35C2"
TCGA.AG.3611.01A	20	44879627	44980659	4	0.4147	SMALL-GAIN	FOCAL	2	"CDH22,SLC35C2"
TCGA.AA.A010.01A	20	45129888	45985327	69	0.6774	SMALL-GAIN	FOCAL	7	"EYA2,OCSTAMP,SLC13A3,SLC2A10,TP53RK,ZMYND8,ZNF334"
TCGA.AA.3679	20	45557468	45618277	61	0.4005	SMALL-GAIN	FOCAL	1	EYA2
TCGA.AG.4009.01A	20	45700761	46365400	70	0.6048	SMALL-GAIN	FOCAL	4	"EYA2,NCOA3,SULF2,ZMYND8"
TCGA.AA.3679	20	46494272	46562167	26	0.6546	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00Q.01A	20	47242357	47538390	38	0.6257	SMALL-GAIN	FOCAL	2	"ARFGEF2,PREX1"
TCGA.AG.3611.01A	20	47685202	47845210	36	0.5278	SMALL-GAIN	FOCAL	3	"CSE1L,DDX27,STAU1"
TCGA.AA.A00N.01A	20	47695059	47835856	25	0.5345	SMALL-GAIN	FOCAL	3	"CSE1L,DDX27,STAU1"
TCGA.AA.3524	20	47856231	48030812	50	0.3832	SMALL-GAIN	FOCAL	3	"DDX27,KCNB1,ZNFX1"
TCGA.AA.A00N.01A	20	47989503	48504339	36	0.4246	SMALL-GAIN	FOCAL	4	"B4GALT5,KCNB1,PTGIS,SLC9A8"
TCGA.DC.6160.01A	20	48560404	48669883	30	0.4438	SMALL-GAIN	FOCAL	2	"RNF114,SNAI1"
TCGA.DC.6160.01A	20	49008757	49852185	47	0.6616	SMALL-GAIN	FOCAL	8	"ADNP,BCAS4,DPM1,FAM65C,KCNG1,MOCS3,PARD6B,PTPN1"
TCGA.AA.A00N.01A	20	49411482	49520399	10	0.6565	SMALL-GAIN	FOCAL	2	"ADNP,BCAS4"
TCGA.AA.3524	20	49461699	49801786	150	0.4066	SMALL-GAIN	FOCAL	5	"ADNP,BCAS4,DPM1,KCNG1,MOCS3"
TCGA.DM.A1HA	20	49934036	53302454	1363	0.4923	SMALL-GAIN	FOCAL	10	"ATP9A,BCAS1,CYP24A1,DOK5,NFATC2,PFDN4,SALL4,TSHZ2,ZFP64,ZNF217"
TCGA.AA.3850	20	50245731	50897802	211	0.54165	SMALL-GAIN	FOCAL	3	"ATP9A,SALL4,ZFP64"
TCGA.AG.3592	20	50352679	53050272	1080	0.5982	SMALL-GAIN	FOCAL	8	"ATP9A,BCAS1,CYP24A1,PFDN4,SALL4,TSHZ2,ZFP64,ZNF217"
TCGA.AG.4009.01A	20	50400803	50721165	10	0.5109	SMALL-GAIN	FOCAL	2	"SALL4,ZFP64"
TCGA.AG.3909.01A	20	50418778	52199281	20	0.4364	SMALL-GAIN	FOCAL	4	"SALL4,TSHZ2,ZFP64,ZNF217"
TCGA.AG.3583	20	50447761	50837185	120	0.6617	SMALL-GAIN	FOCAL	1	ZFP64
TCGA.QG.A5Z1	20	51243013	51543773	125	0.4841	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	20	51246671	51634424	173	0.4907	SMALL-GAIN	FOCAL	1	TSHZ2
TCGA.AA.3982	20	51294223	51639509	150	0.5258	SMALL-GAIN	FOCAL	1	TSHZ2
TCGA.DY.A1DF	20	51368564	53032256	727	0.5918	SMALL-GAIN	FOCAL	5	"BCAS1,CYP24A1,PFDN4,TSHZ2,ZNF217"
TCGA.AA.3844	20	51695810	52831495	511	0.5673	SMALL-GAIN	FOCAL	5	"BCAS1,CYP24A1,PFDN4,TSHZ2,ZNF217"
TCGA.AG.3742	20	51721545	53314982	698	0.6523	SMALL-GAIN	FOCAL	6	"BCAS1,CYP24A1,DOK5,PFDN4,TSHZ2,ZNF217"
TCGA.AA.3811	20	51726908	52843798	494	0.5772	SMALL-GAIN	FOCAL	5	"BCAS1,CYP24A1,PFDN4,TSHZ2,ZNF217"
TCGA.CM.5348	20	51727441	52199494	210	0.6104	SMALL-GAIN	FOCAL	2	"TSHZ2,ZNF217"
TCGA.AA.3715	20	52114184	52428219	93	0.4201	SMALL-GAIN	FOCAL	1	ZNF217
TCGA.AG.4009.01A	20	52185608	54945193	46	0.4372	SMALL-GAIN	FOCAL	9	"AURKA,BCAS1,CBLN4,CYP24A1,DOK5,FAM210B,MC3R,PFDN4,ZNF217"
TCGA.AA.A010.01A	20	52644922	54823759	28	0.618	SMALL-GAIN	FOCAL	5	"BCAS1,CBLN4,CYP24A1,DOK5,PFDN4"
TCGA.AA.3941	20	52843798	53038297	78	0.3826	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3982	20	52843798	53205395	132	0.5235	SMALL-GAIN	FOCAL	1	DOK5
TCGA.AA.3982	20	53464668	54831121	660	0.5179	SMALL-GAIN	FOCAL	2	"CBLN4,MC3R"
TCGA.NH.A6GB	20	53647525	53766318	45	0.5066	SMALL-GAIN	FOCAL	0	None
TCGA.NH.A6GB	20	53790051	53873417	30	0.4995	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3956	20	54032590	54256628	132	0.603	SMALL-GAIN	FOCAL	0	None
TCGA.NH.A6GB	20	54221724	54525213	184	0.5363	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	20	55206259	55212752	5	0.6429	SMALL-GAIN	FOCAL	1	TFAP2C
TCGA.AA.A010.01A	20	56063399	56234562	31	0.4281	SMALL-GAIN	FOCAL	4	"CTCFL,PCK1,PMEPA1,ZBP1"
TCGA.AG.3909.01A	20	56179577	57045616	27	0.4986	SMALL-GAIN	FOCAL	7	"ANKRD60,APCDD1L,C20orf85,PMEPA1,RAB22A,VAPB,ZBP1"
TCGA.CK.5914.01A	20	56234562	56814678	19	0.5188	SMALL-GAIN	FOCAL	3	"ANKRD60,C20orf85,PMEPA1"
TCGA.AA.3982	20	57003405	57073324	37	0.6661	SMALL-GAIN	FOCAL	2	"APCDD1L,VAPB"
TCGA.CK.5914.01A	20	57088822	57781943	74	0.6348	SMALL-GAIN	FOCAL	10	"APCDD1L,ATP5E,CTSZ,GNAS,NELFCD,NPEPL1,SLMO2,STX16,TUBB1,ZNF831"
TCGA.AG.3909.01A	20	57268771	57429429	14	0.455	SMALL-GAIN	FOCAL	2	"GNAS,NPEPL1"
TCGA.AA.3941	20	57799779	57845511	20	0.3978	SMALL-GAIN	FOCAL	1	ZNF831
TCGA.AA.A00N.01A	20	57827986	58476680	44	0.4084	SMALL-GAIN	FOCAL	4	"EDN3,PHACTR3,SYCP2,ZNF831"
TCGA.AA.A010.01A	20	57875802	58422077	18	0.6622	SMALL-GAIN	FOCAL	2	"EDN3,PHACTR3"
TCGA.AG.4009.01A	20	58439306	58488965	30	0.4501	SMALL-GAIN	FOCAL	1	SYCP2
TCGA.AG.4009.01A	20	58533717	60509064	35	0.4649	SMALL-GAIN	FOCAL	3	"C20orf197,CDH26,CDH4"
TCGA.AG.3592	20	59149312	60005706	497	0.4701	SMALL-GAIN	FOCAL	1	CDH4
TCGA.AD.A5EK	20	59198086	60158928	537	0.3858	SMALL-GAIN	FOCAL	1	CDH4
TCGA.AD.A5EK	20	60222401	60467251	95	0.4541	SMALL-GAIN	FOCAL	1	CDH4
TCGA.AD.A5EK	20	60489691	60772582	87	0.4642	SMALL-GAIN	FOCAL	6	"CDH4,LSM14B,MTG2,PSMA7,SS18L1,TAF4"
TCGA.AA.3930.01A	20	60747687	60868790	25	0.4432	SMALL-GAIN	FOCAL	4	"HRH3,MTG2,OSBPL2,SS18L1"
TCGA.AD.A5EK	20	60812844	61363721	118	0.3881	SMALL-GAIN	FOCAL	10	"ADRM1,CABLES2,GATA5,LAMA5,MIR1-1HG,NTSR1,OSBPL2,RBBP8NL,RPS21,SLCO4A1"
TCGA.AA.3862.01A	20	61467191	61588067	31	0.5173	SMALL-GAIN	FOCAL	6	"COL9A3,DIDO1,DPH3P1,GID8,SLC17A9,TCFL5"
TCGA.AM.5820	20	61470724	61579665	31	0.6187	SMALL-GAIN	FOCAL	5	"COL9A3,DIDO1,DPH3P1,GID8,TCFL5"
TCGA.AG.3906.01A	20	61510553	61845179	32	0.4866	SMALL-GAIN	FOCAL	5	"BHLHE23,DIDO1,GID8,SLC17A9,YTHDF1"
TCGA.A6.3808.01A	20	61588755	61833660	15	0.4405	SMALL-GAIN	FOCAL	3	"BHLHE23,SLC17A9,YTHDF1"
TCGA.AG.3882	20	61706148	61744282	20	0.6116	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	20	62229063	62421217	25	0.3897	SMALL-GAIN	FOCAL	9	"ARFRP1,GMEB2,LIME1,RTEL1,SLC2A4RG,STMN3,TNFRSF6B,ZBTB46,ZGPAT"
TCGA.AA.A02K.01A	20	62384019	62664166	58	0.527	SMALL-GAIN	FOCAL	8	"ABHD16B,DNAJC5,PRPF6,SAMD10,TPD52L2,UCKL1,ZBTB46,ZNF512B"
TCGA.AA.A01Q.01A	20	62560635	62612538	21	0.3899	SMALL-GAIN	FOCAL	5	"DNAJC5,PRPF6,SAMD10,UCKL1,ZNF512B"
TCGA.AG.3906.01A	20	62630355	62663231	13	0.4504	SMALL-GAIN	FOCAL	1	PRPF6
TCGA.AA.A00L.01A	20	62654062	62891299	43	0.4531	SMALL-GAIN	FOCAL	9	"LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,SOX18,TCEA2"
TCGA.AA.3811	20	62780622	62912462	50	0.567	SMALL-GAIN	FOCAL	2	"MYT1,PCMTD2"
TCGA.CK.5914.01A	21	10862558	15013644	28	0.577	SMALL-GAIN	FOCAL	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.AA.A00D.01A	21	10934871	15579089	24	0.3804	SMALL-GAIN	FOCAL	8	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED,TPTE"
TCGA.AA.A00N.01A	21	11049499	15561488	12	0.5763	SMALL-GAIN	FOCAL	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED"
TCGA.AA.A010.01A	21	15535693	15991892	33	0.5806	SMALL-GAIN	FOCAL	5	"HSPA13,LIPI,LOC388813,RBM11,SAMSN1"
TCGA.T9.A92H	21	15620390	15659549	23	0.5804	SMALL-GAIN	FOCAL	0	None
TCGA.F5.6810	21	15916133	17267863	498	0.3952	SMALL-GAIN	FOCAL	4	"LOC388813,NRIP1,SAMSN1,USP25"
TCGA.AA.A00D.01A	21	17135152	26946227	72	0.4771	SMALL-GAIN	FOCAL	7	"BTG3,C21orf91,CHODL,CXADR,NCAM2,TMPRSS15,USP25"
TCGA.AA.3660	21	17722787	18006975	105	0.385	SMALL-GAIN	FOCAL	0	None
TCGA.A6.A56B	21	17763747	18360333	199	0.4547	SMALL-GAIN	FOCAL	0	None
TCGA.T9.A92H	21	19331299	19408301	39	0.4941	SMALL-GAIN	FOCAL	1	CHODL
TCGA.AA.A00N.01A	21	19635066	26543052	48	0.6665	SMALL-GAIN	FOCAL	3	"CHODL,NCAM2,TMPRSS15"
TCGA.AA.A01Z	21	20759837	21306862	193	0.4664	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A28K	21	22010694	23642859	616	0.4582	SMALL-GAIN	FOCAL	1	NCAM2
TCGA.AA.A01Z	21	22517188	23270642	305	0.4884	SMALL-GAIN	FOCAL	1	NCAM2
TCGA.AA.A01Z	21	23285147	23345921	27	0.4642	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4015	21	23992003	24278062	79	0.6406	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4015	21	24349207	24476940	47	0.4369	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4015	21	24563992	24752693	81	0.5364	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3742	21	24700556	24950093	91	0.4695	SMALL-GAIN	FOCAL	0	None
TCGA.AY.5543	21	25265710	25292865	22	0.4584	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4015	21	25594325	25611419	12	0.6126	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A01Z	21	26555932	26621920	26	0.3791	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4015	21	26567687	27128391	165	0.6596	SMALL-GAIN	FOCAL	4	"ATP5J,GABPA,JAM2,MRPL39"
TCGA.AG.A00C.01A	21	27086870	27141298	14	0.4949	SMALL-GAIN	FOCAL	3	"ATP5J,GABPA,JAM2"
TCGA.AA.3930.01A	21	27097489	27136854	11	0.5094	SMALL-GAIN	FOCAL	2	"ATP5J,GABPA"
TCGA.AG.A008.01A	21	27117504	27141298	8	0.4506	SMALL-GAIN	FOCAL	1	GABPA
TCGA.AA.3666	21	29418899	29881134	203	0.5581	SMALL-GAIN	FOCAL	0	None
TCGA.EF.5830	21	29989701	31232097	443	0.4115	SMALL-GAIN	FOCAL	8	"BACH1,CCT8,GRIK1,LTN1,MAP3K7CL,N6AMT1,RWDD2B,USP16"
TCGA.AA.A00Q.01A	21	30248660	30358408	35	0.5823	SMALL-GAIN	FOCAL	2	"LTN1,N6AMT1"
TCGA.AA.A00D.01A	21	30248660	30714711	77	0.6333	SMALL-GAIN	FOCAL	7	"BACH1,CCT8,LTN1,MAP3K7CL,N6AMT1,RWDD2B,USP16"
TCGA.AA.A00N.01A	21	30257497	30343545	27	0.6478	SMALL-GAIN	FOCAL	2	"LTN1,N6AMT1"
TCGA.AA.A00N.01A	21	32361823	32638279	27	0.6569	SMALL-GAIN	FOCAL	2	"KRTAP19-8,TIAM1"
TCGA.AA.A010.01A	21	33785121	34099054	49	0.6444	SMALL-GAIN	FOCAL	4	"C21orf59,EVA1C,SYNJ1,TCP10L"
TCGA.AG.A01W.01A	21	33837222	33849221	10	0.6162	SMALL-GAIN	FOCAL	1	EVA1C
TCGA.AA.A00D.01A	21	33839987	34142075	63	0.6556	SMALL-GAIN	FOCAL	5	"C21orf59,EVA1C,PAXBP1,SYNJ1,TCP10L"
TCGA.AA.3930.01A	21	34614138	34893176	56	0.3848	SMALL-GAIN	FOCAL	7	"DNAJC28,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,TMEM50B"
TCGA.AG.3891.01A	21	34614138	34893176	46	0.4039	SMALL-GAIN	FOCAL	7	"DNAJC28,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,TMEM50B"
TCGA.AA.A00D.01A	21	34614138	34924021	63	0.6127	SMALL-GAIN	FOCAL	8	"DNAJC28,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,SON,TMEM50B"
TCGA.AG.3611.01A	21	34799154	34861272	12	0.4818	SMALL-GAIN	FOCAL	3	"DNAJC28,IFNGR2,TMEM50B"
TCGA.AG.A00C.01A	21	34860503	34882050	6	0.5522	SMALL-GAIN	FOCAL	2	"DNAJC28,GART"
TCGA.AG.3602	21	34888620	35712311	253	0.5184	SMALL-GAIN	FOCAL	9	"ATP5O,CRYZL1,DONSON,GART,ITSN1,LOC400863,MRPS6,SLC5A3,SON"
TCGA.A6.2684	21	34893343	35452235	140	0.5815	SMALL-GAIN	FOCAL	9	"ATP5O,CRYZL1,DONSON,GART,ITSN1,LOC400863,MRPS6,SLC5A3,SON"
TCGA.AG.A00C.01A	21	34900789	34974510	37	0.5823	SMALL-GAIN	FOCAL	4	"CRYZL1,DONSON,GART,SON"
TCGA.AG.A008.01A	21	34921765	34939435	9	0.5673	SMALL-GAIN	FOCAL	1	SON
TCGA.AA.A010.01A	21	35013451	35286679	48	0.4847	SMALL-GAIN	FOCAL	3	"ATP5O,CRYZL1,ITSN1"
TCGA.AA.A01Q.01A	21	35091047	35186165	20	0.4486	SMALL-GAIN	FOCAL	1	ITSN1
TCGA.AA.3930.01A	21	35209250	35260406	12	0.3999	SMALL-GAIN	FOCAL	1	ITSN1
TCGA.AA.A02K.01A	21	35247627	35258560	6	0.651	SMALL-GAIN	FOCAL	1	ITSN1
TCGA.AA.3930.01A	21	36078280	36164535	7	0.5304	SMALL-GAIN	FOCAL	2	"CLIC6,RUNX1"
TCGA.AG.3602	21	36878035	37015701	72	0.4854	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3883	21	37419843	37818901	110	0.4027	SMALL-GAIN	FOCAL	6	"CBR1,CBR3,CHAF1B,DOPEY2,MORC3,SETD4"
TCGA.AG.3602	21	37521277	38600225	343	0.5943	SMALL-GAIN	FOCAL	10	"CHAF1B,CLDN14,DOPEY2,DSCR3,HLCS,MORC3,PIGP,RIPPLY3,SIM2,TTC3"
TCGA.AA.3930.01A	21	37583813	37833237	63	0.442	SMALL-GAIN	FOCAL	4	"CHAF1B,CLDN14,DOPEY2,MORC3"
TCGA.DY.A1DC	21	37705392	38764243	308	0.4353	SMALL-GAIN	FOCAL	10	"CHAF1B,CLDN14,DSCR3,DYRK1A,HLCS,MORC3,PIGP,RIPPLY3,SIM2,TTC3"
TCGA.AA.A010.01A	21	37783719	38081410	7	0.522	SMALL-GAIN	FOCAL	3	"CHAF1B,CLDN14,SIM2"
TCGA.AA.A00N.01A	21	38468813	38573693	40	0.5418	SMALL-GAIN	FOCAL	1	TTC3
TCGA.AA.A010.01A	21	38516778	39947516	69	0.4886	SMALL-GAIN	FOCAL	7	"DSCR3,DSCR4,DYRK1A,ERG,KCNJ15,KCNJ6,TTC3"
TCGA.DY.A1DC	21	38815730	39429050	292	0.4158	SMALL-GAIN	FOCAL	3	"DSCR4,DYRK1A,KCNJ6"
TCGA.EF.5830	21	38848133	40527773	801	0.4716	SMALL-GAIN	FOCAL	6	"DSCR4,DYRK1A,ERG,ETS2,KCNJ15,KCNJ6"
TCGA.AG.A008.01A	21	40181943	40190302	6	0.4737	SMALL-GAIN	FOCAL	1	ETS2
TCGA.AZ.4681	21	40320337	40394484	63	0.4779	SMALL-GAIN	FOCAL	0	None
TCGA.AZ.4681	21	40433229	40499497	43	0.5537	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	21	40752284	40886950	20	0.472	SMALL-GAIN	FOCAL	3	"LCA5L,SH3BGR,WRB"
TCGA.AA.3660	21	40997308	41102930	42	0.5188	SMALL-GAIN	FOCAL	1	B3GALT5
TCGA.AA.A010.01A	21	41032525	42080353	45	0.4798	SMALL-GAIN	FOCAL	4	"B3GALT5,DSCAM,IGSF5,PCP4"
TCGA.A6.2684	21	41721716	41835381	56	0.471	SMALL-GAIN	FOCAL	1	DSCAM
TCGA.AA.A02K.01A	21	42830439	43319114	53	0.409	SMALL-GAIN	FOCAL	5	"C2CD2,MX1,PRDM15,RIPK4,TMPRSS2"
TCGA.AA.A010.01A	21	43491375	43557542	22	0.5359	SMALL-GAIN	FOCAL	1	UMODL1
TCGA.AA.A010.01A	21	43693366	43897354	52	0.4826	SMALL-GAIN	FOCAL	7	"ABCG1,RSPH1,TFF1,TFF2,TFF3,TMPRSS3,UBASH3A"
TCGA.AA.A00N.01A	21	43824033	43897354	18	0.6581	SMALL-GAIN	FOCAL	2	"RSPH1,UBASH3A"
TCGA.AM.5820	21	44085657	44101078	6	0.6067	SMALL-GAIN	FOCAL	1	PDE9A
TCGA.AA.A00Q.01A	21	44317008	44436978	8	0.5322	SMALL-GAIN	FOCAL	3	"ERVH48-1,NDUFV3,PKNOX1"
TCGA.AA.A01S	21	44707355	44822256	50	0.43945	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A00Q.01A	21	44837372	45168819	38	0.4671	SMALL-GAIN	FOCAL	4	"HSF2BP,PDXK,RRP1B,SIK1"
TCGA.AA.A00Q.01A	21	45666248	45739902	20	0.4681	SMALL-GAIN	FOCAL	3	"AIRE,DNMT3L,PFKL"
TCGA.AA.A00Q.01A	21	45773533	45846490	23	0.5392	SMALL-GAIN	FOCAL	1	TRPM2
TCGA.AA.A00Q.01A	21	45919669	45971207	13	0.41	SMALL-GAIN	FOCAL	3	"KRTAP10-1,KRTAP10-2,TSPEAR"
TCGA.AA.A010.01A	21	45953567	45978456	8	0.5614	SMALL-GAIN	FOCAL	4	"KRTAP10-1,KRTAP10-2,KRTAP10-3,TSPEAR"
TCGA.AG.A00C.01A	21	46197167	46306217	11	0.4759	SMALL-GAIN	FOCAL	4	"ITGB2,PTTG1IP,SUMO3,UBE2G2"
TCGA.AA.A010.01A	21	46591466	46641906	9	0.5229	SMALL-GAIN	FOCAL	1	ADARB1
TCGA.AG.A00C.01A	21	46645370	47329217	26	0.381	SMALL-GAIN	FOCAL	5	"ADARB1,COL18A1,PCBP3,POFUT2,SLC19A1"
TCGA.AM.5820	21	46979645	47052556	30	0.4158	SMALL-GAIN	FOCAL	0	None
TCGA.AM.5820	21	47280000	47642271	88	0.5825	SMALL-GAIN	FOCAL	6	"COL6A1,COL6A2,FTCD,LSS,PCBP3,SPATC1L"
TCGA.AM.5820	21	47964258	48019810	28	0.4411	SMALL-GAIN	FOCAL	2	"DIP2A,S100B"
TCGA.AG.3906.01A	22	16266947	17072448	7	0.4354	SMALL-GAIN	FOCAL	3	"CCT8L2,OR11H1,POTEH"
TCGA.AA.A01Q.01A	22	17071738	17472716	8	0.3843	SMALL-GAIN	FOCAL	3	"CCT8L2,GAB4,XKR3"
TCGA.AG.3906.01A	22	17588541	17690229	21	0.6412	SMALL-GAIN	FOCAL	4	"CECR1,CECR5,CECR6,IL17RA"
TCGA.CK.5914.01A	22	18366993	18463582	16	0.4172	SMALL-GAIN	FOCAL	1	MICAL3
TCGA.CK.5914.01A	22	19318916	19420028	26	0.4891	SMALL-GAIN	FOCAL	1	HIRA
TCGA.AG.3909.01A	22	19340842	19393256	19	0.4538	SMALL-GAIN	FOCAL	1	HIRA
TCGA.AA.A00N.01A	22	19974520	20052018	11	0.4038	SMALL-GAIN	FOCAL	2	"ARVCF,TANGO2"
TCGA.AG.3906.01A	22	20040835	20097492	17	0.6156	SMALL-GAIN	FOCAL	2	"DGCR8,TANGO2"
TCGA.AA.A00L.01A	22	21072939	21303951	49	0.6494	SMALL-GAIN	FOCAL	4	"CRKL,PI4KA,SERPIND1,SNAP29"
TCGA.AG.3909.01A	22	21081491	21241925	44	0.3832	SMALL-GAIN	FOCAL	3	"PI4KA,SERPIND1,SNAP29"
TCGA.CK.5914.01A	22	21088007	21213362	37	0.4625	SMALL-GAIN	FOCAL	3	"PI4KA,SERPIND1,SNAP29"
TCGA.AG.3906.01A	22	21167599	21342252	25	0.387	SMALL-GAIN	FOCAL	5	"AIFM3,CRKL,LZTR1,PI4KA,SNAP29"
TCGA.AG.A015.01A	22	21342252	21354909	8	0.582	SMALL-GAIN	FOCAL	2	"LZTR1,THAP7"
TCGA.QG.A5Z1	22	22339198	22508714	90	0.4966	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3861.01A	22	22385599	23248465	67	0.4443	SMALL-GAIN	FOCAL	6	"GGTLC2,IGLL5,PRAME,VPREB1,ZNF280A,ZNF280B"
TCGA.AA.A01Q.01A	22	22453110	23401643	37	0.5199	SMALL-GAIN	FOCAL	7	"GGTLC2,IGLL5,PRAME,RSPH14,VPREB1,ZNF280A,ZNF280B"
TCGA.AA.3982	22	22502178	22520066	13	0.4391	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	22	22516516	23089869	52	0.5775	SMALL-GAIN	FOCAL	5	"GGTLC2,PRAME,VPREB1,ZNF280A,ZNF280B"
TCGA.AG.3909.01A	22	22930616	23406029	37	0.6013	SMALL-GAIN	FOCAL	3	"GGTLC2,IGLL5,RSPH14"
TCGA.AA.A010.01A	22	23595945	24040983	46	0.4415	SMALL-GAIN	FOCAL	4	"BCR,DRICH1,IGLL1,RGL4"
TCGA.CK.5914.01A	22	23651574	24040983	31	0.522	SMALL-GAIN	FOCAL	4	"BCR,DRICH1,IGLL1,RGL4"
TCGA.AA.A010.01A	22	24158930	24236947	27	0.656	SMALL-GAIN	FOCAL	4	"DERL3,MIF,SLC2A11,SMARCB1"
TCGA.AA.A010.01A	22	24445505	24515384	22	0.4195	SMALL-GAIN	FOCAL	1	CABIN1
TCGA.AA.A00A.01A	22	24734302	25153835	45	0.4918	SMALL-GAIN	FOCAL	8	"ADORA2A,GGT1,GUCD1,LRRC75B,PIWIL3,SNRPD3,SPECC1L,UPB1"
TCGA.AA.A010.01A	22	24891322	24953594	20	0.457	SMALL-GAIN	FOCAL	3	"GUCD1,SNRPD3,UPB1"
TCGA.AA.A00Q.01A	22	24963901	25331309	31	0.4512	SMALL-GAIN	FOCAL	6	"GGT1,LRRC75B,PIWIL3,SGSM1,SNRPD3,TMEM211"
TCGA.AA.A01Q.01A	22	25124167	25715687	40	0.3859	SMALL-GAIN	FOCAL	6	"CRYBB2,CRYBB3,KIAA1671,PIWIL3,SGSM1,TMEM211"
TCGA.AG.3909.01A	22	25155794	25272494	13	0.6762	SMALL-GAIN	FOCAL	2	"PIWIL3,SGSM1"
TCGA.CK.5914.01A	22	25251210	25566735	23	0.54	SMALL-GAIN	FOCAL	3	"KIAA1671,SGSM1,TMEM211"
TCGA.AA.A00A.01A	22	25313576	26118236	39	0.4994	SMALL-GAIN	FOCAL	7	"ADRBK2,CRYBB2,CRYBB3,KIAA1671,LRP5L,SGSM1,TMEM211"
TCGA.AA.A00Q.01A	22	25960989	26422972	30	0.4128	SMALL-GAIN	FOCAL	2	"ADRBK2,MYO18B"
TCGA.AG.3909.01A	22	26173508	26859843	59	0.5039	SMALL-GAIN	FOCAL	4	"ASPHD2,HPS4,MYO18B,SEZ6L"
TCGA.AA.A00L.01A	22	26701897	28310219	63	0.4103	SMALL-GAIN	FOCAL	10	"ASPHD2,CRYBA4,CRYBB1,HPS4,MN1,PITPNB,SEZ6L,SRRD,TFIP11,TPST2"
TCGA.AG.A00C.01A	22	26868221	26887378	10	0.5007	SMALL-GAIN	FOCAL	2	"HPS4,SRRD"
TCGA.AG.3909.01A	22	27007989	28146856	8	0.4955	SMALL-GAIN	FOCAL	3	"CRYBA4,CRYBB1,MN1"
TCGA.QG.A5Z1	22	27037013	27876150	587	0.5244	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A010.01A	22	28315006	29025560	25	0.6585	SMALL-GAIN	FOCAL	2	"PITPNB,TTC28"
TCGA.CI.6619	22	28387748	28772816	74	0.4909	SMALL-GAIN	FOCAL	1	TTC28
TCGA.CK.5914.01A	22	28410189	28692144	12	0.6426	SMALL-GAIN	FOCAL	1	TTC28
TCGA.AA.A00Q.01A	22	28503013	29191111	23	0.4972	SMALL-GAIN	FOCAL	5	"CCDC117,CHEK2,HSCB,TTC28,XBP1"
TCGA.AA.A00L.01A	22	29182060	29678382	31	0.4509	SMALL-GAIN	FOCAL	8	"C22orf31,CCDC117,EMID1,EWSR1,KREMEN1,RHBDD3,XBP1,ZNRF3"
TCGA.AA.3819	22	29379556	29668003	112	0.4323	SMALL-GAIN	FOCAL	6	"C22orf31,EMID1,EWSR1,KREMEN1,RHBDD3,ZNRF3"
TCGA.AA.A00L.01A	22	29704464	30050579	61	0.4698	SMALL-GAIN	FOCAL	8	"AP1B1,GAS2L1,NEFH,NF2,NIPSNAP1,RASL10A,RFPL1,THOC5"
TCGA.CK.5914.01A	22	29745159	29837483	12	0.6195	SMALL-GAIN	FOCAL	2	"AP1B1,RFPL1"
TCGA.AA.A00D.01A	22	29879326	30134281	53	0.5541	SMALL-GAIN	FOCAL	6	"CABP7,NEFH,NF2,NIPSNAP1,THOC5,ZMAT5"
TCGA.AA.A00N.01A	22	29904381	29932564	13	0.547	SMALL-GAIN	FOCAL	1	THOC5
TCGA.AG.A00C.01A	22	29938799	30064275	21	0.4427	SMALL-GAIN	FOCAL	3	"NF2,NIPSNAP1,THOC5"
TCGA.AA.A00D.01A	22	30202156	30404957	21	0.4959	SMALL-GAIN	FOCAL	2	"ASCC2,MTMR3"
TCGA.AA.A00N.01A	22	30234111	30602923	31	0.5509	SMALL-GAIN	FOCAL	3	"ASCC2,HORMAD2,MTMR3"
TCGA.AA.A010.01A	22	30821803	30928465	30	0.6555	SMALL-GAIN	FOCAL	4	"MTFP1,SEC14L3,SEC14L4,SEC14L6"
TCGA.AA.A00N.01A	22	30855961	30921569	22	0.5112	SMALL-GAIN	FOCAL	3	"SEC14L3,SEC14L4,SEC14L6"
TCGA.AG.3909.01A	22	30855961	30928465	21	0.516	SMALL-GAIN	FOCAL	3	"SEC14L3,SEC14L4,SEC14L6"
TCGA.CK.5914.01A	22	30855961	30928465	25	0.5036	SMALL-GAIN	FOCAL	3	"SEC14L3,SEC14L4,SEC14L6"
TCGA.AA.A00N.01A	22	31090214	31337370	27	0.5236	SMALL-GAIN	FOCAL	2	"MORC2,OSBP2"
TCGA.AA.A010.01A	22	31137097	31323958	14	0.6036	SMALL-GAIN	FOCAL	2	"MORC2,OSBP2"
TCGA.CK.5914.01A	22	31329384	31337370	10	0.5586	SMALL-GAIN	FOCAL	1	MORC2
TCGA.AM.5820	22	31475669	31546950	14	0.6203	SMALL-GAIN	FOCAL	4	"INPP5J,PLA2G3,SELM,SMTN"
TCGA.AA.A010.01A	22	31478421	31535800	39	0.5	SMALL-GAIN	FOCAL	4	"INPP5J,PLA2G3,SELM,SMTN"
TCGA.AG.3891.01A	22	31663735	32003874	64	0.508	SMALL-GAIN	FOCAL	6	"DRG1,EIF4ENIF1,LIMK2,PATZ1,PIK3IP1,SFI1"
TCGA.AA.A010.01A	22	31795604	31840536	14	0.6254	SMALL-GAIN	FOCAL	2	"DRG1,EIF4ENIF1"
TCGA.CK.5914.01A	22	31829817	31864109	18	0.3796	SMALL-GAIN	FOCAL	2	"DRG1,EIF4ENIF1"
TCGA.AA.A00A.01A	22	31850083	32108071	22	0.4303	SMALL-GAIN	FOCAL	4	"EIF4ENIF1,PISD,PRR14L,SFI1"
TCGA.AA.A00N.01A	22	31924626	31974307	10	0.3793	SMALL-GAIN	FOCAL	1	SFI1
TCGA.AM.5820	22	32006407	32028720	9	0.6765	SMALL-GAIN	FOCAL	2	"PISD,SFI1"
TCGA.AA.A010.01A	22	32007709	32302179	70	0.5085	SMALL-GAIN	FOCAL	4	"DEPDC5,PISD,PRR14L,SFI1"
TCGA.AG.3906.01A	22	32084077	32200127	21	0.4139	SMALL-GAIN	FOCAL	2	"DEPDC5,PRR14L"
TCGA.AG.3909.01A	22	32174023	32293426	32	0.5775	SMALL-GAIN	FOCAL	1	DEPDC5
TCGA.CK.5914.01A	22	32179845	32302179	36	0.6554	SMALL-GAIN	FOCAL	1	DEPDC5
TCGA.AA.A00N.01A	22	32193538	32205534	7	0.4065	SMALL-GAIN	FOCAL	1	DEPDC5
TCGA.AG.3909.01A	22	32439242	32487557	11	0.4911	SMALL-GAIN	FOCAL	1	SLC5A1
TCGA.CK.5914.01A	22	32439242	32554923	23	0.5957	SMALL-GAIN	FOCAL	2	"C22orf42,SLC5A1"
TCGA.AA.A00L.01A	22	32547410	32810248	35	0.6122	SMALL-GAIN	FOCAL	6	"BPIFC,C22orf42,RFPL2,RFPL3,RTCB,SLC5A4"
TCGA.AG.3909.01A	22	32909632	35481397	34	0.6093	SMALL-GAIN	FOCAL	4	"ISX,LARGE,SYN3,TIMP3"
TCGA.AG.A01W.01A	22	35010057	35031905	21	0.5107	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3909.01A	22	35713824	35726291	6	0.384	SMALL-GAIN	FOCAL	1	TOM1
TCGA.AG.3909.01A	22	36003306	36157194	16	0.405	SMALL-GAIN	FOCAL	4	"APOL5,APOL6,MB,RBFOX2"
TCGA.CK.5914.01A	22	36003306	36684246	50	0.4971	SMALL-GAIN	FOCAL	9	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,MB,MYH9,RBFOX2"
TCGA.AG.3909.01A	22	36205775	36629106	15	0.5379	SMALL-GAIN	FOCAL	4	"APOL2,APOL3,APOL4,RBFOX2"
TCGA.AA.A00L.01A	22	36698586	37196848	54	0.5729	SMALL-GAIN	FOCAL	7	"CACNG2,EIF3D,FOXRED2,IFT27,MYH9,PVALB,TXN2"
TCGA.AA.A00D.01A	22	36876625	37212923	36	0.582	SMALL-GAIN	FOCAL	6	"CACNG2,EIF3D,FOXRED2,IFT27,PVALB,TXN2"
TCGA.AM.5820	22	37400083	37751944	122	0.4347	SMALL-GAIN	FOCAL	10	"C1QTNF6,CYTH4,IL2RB,KCTD17,MPST,RAC2,SSTR3,TEX33,TMPRSS6,TST"
TCGA.AA.A00N.01A	22	37480130	37688603	34	0.3955	SMALL-GAIN	FOCAL	6	"C1QTNF6,CYTH4,IL2RB,RAC2,SSTR3,TMPRSS6"
TCGA.AG.3909.01A	22	37622662	37640075	6	0.6532	SMALL-GAIN	FOCAL	1	RAC2
TCGA.AA.A00L.01A	22	38072812	38153620	15	0.6298	SMALL-GAIN	FOCAL	3	"LGALS1,NOL12,TRIOBP"
TCGA.CK.5914.01A	22	38259219	38282713	6	0.5146	SMALL-GAIN	FOCAL	1	EIF3L
TCGA.AM.5820	22	39121251	39255590	35	0.5101	SMALL-GAIN	FOCAL	4	"DNAL4,GTPBP1,NPTXR,SUN2"
TCGA.AG.A01W.01A	22	39128046	39146751	17	0.5266	SMALL-GAIN	FOCAL	2	"GTPBP1,SUN2"
TCGA.AG.3906.01A	22	39138287	39448554	45	0.4003	SMALL-GAIN	FOCAL	10	"APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,CBX6,DNAL4,NPTXR,SUN2"
TCGA.AA.A010.01A	22	39353611	39499642	44	0.5544	SMALL-GAIN	FOCAL	8	"APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H"
TCGA.AG.A01W.01A	22	40082257	40093416	4	0.5556	SMALL-GAIN	FOCAL	1	CACNA1I
TCGA.AA.A00N.01A	22	41523449	41556587	17	0.5583	SMALL-GAIN	FOCAL	1	EP300
TCGA.AA.A00N.01A	22	41864535	41926689	21	0.4064	SMALL-GAIN	FOCAL	3	"ACO2,PHF5A,POLR3H"
TCGA.DM.A1D7	22	42025056	42267604	48	0.4448	SMALL-GAIN	FOCAL	6	"C22orf46,CCDC134,MEI1,NHP2L1,SREBF2,XRCC6"
TCGA.AA.A00N.01A	22	42109956	42180620	22	0.6076	SMALL-GAIN	FOCAL	1	MEI1
TCGA.AG.3909.01A	22	42109956	42180620	22	0.4899	SMALL-GAIN	FOCAL	1	MEI1
TCGA.AG.3909.01A	22	42262788	42280795	9	0.446	SMALL-GAIN	FOCAL	1	SREBF2
TCGA.AG.3909.01A	22	42296352	42341187	9	0.4062	SMALL-GAIN	FOCAL	4	"CENPM,SHISA8,SREBF2,TNFRSF13C"
TCGA.CK.5914.01A	22	43204724	43236890	11	0.4112	SMALL-GAIN	FOCAL	1	ARFGAP3
TCGA.AM.5820	22	43509667	43717480	87	0.5451	SMALL-GAIN	FOCAL	5	"BIK,MCAT,SCUBE1,TSPO,TTLL12"
TCGA.AA.A00N.01A	22	43870566	44112652	26	0.5683	SMALL-GAIN	FOCAL	2	"EFCAB6,MPPED1"
TCGA.AA.A010.01A	22	43870566	44168751	31	0.4363	SMALL-GAIN	FOCAL	2	"EFCAB6,MPPED1"
TCGA.AA.3941	22	43951289	44086748	48	0.6632	SMALL-GAIN	FOCAL	1	EFCAB6
TCGA.AG.A01W.01A	22	43971654	43980138	8	0.5884	SMALL-GAIN	FOCAL	1	EFCAB6
TCGA.AA.A010.01A	22	44286891	44681256	55	0.3802	SMALL-GAIN	FOCAL	6	"KIAA1644,PARVB,PARVG,PNPLA3,PNPLA5,SAMM50"
TCGA.AA.A00N.01A	22	44379745	44586382	25	0.5436	SMALL-GAIN	FOCAL	3	"PARVB,PARVG,SAMM50"
TCGA.AM.5820	22	44652156	44892134	120	0.4797	SMALL-GAIN	FOCAL	2	"KIAA1644,LDOC1L"
TCGA.AM.5820	22	44929973	45123745	79	0.4031	SMALL-GAIN	FOCAL	2	"PRR5,PRR5-ARHGAP8"
TCGA.AA.A010.01A	22	45127512	45316223	27	0.4342	SMALL-GAIN	FOCAL	4	"ARHGAP8,PHF21B,PRR5,PRR5-ARHGAP8"
TCGA.AM.5820	22	45253925	45407498	72	0.4979	SMALL-GAIN	FOCAL	3	"ARHGAP8,PHF21B,PRR5-ARHGAP8"
TCGA.AA.A00D.01A	22	45592976	46372503	59	0.3798	SMALL-GAIN	FOCAL	8	"ATXN10,FAM118A,FBLN1,KIAA0930,RIBC2,SMC1B,UPK3A,WNT7B"
TCGA.CK.5914.01A	22	46114233	46318729	11	0.4237	SMALL-GAIN	FOCAL	2	"ATXN10,WNT7B"
TCGA.QG.A5Z1	22	46213590	46463430	32	0.4905	SMALL-GAIN	FOCAL	3	"ATXN10,PRR34,WNT7B"
TCGA.AM.5820	22	46637253	47006511	133	0.4052	SMALL-GAIN	FOCAL	7	"CDPF1,CELSR1,GTSE1,PKDREJ,PPARA,TRMU,TTC38"
TCGA.AA.3979	22	46823909	47114520	106	0.5892	SMALL-GAIN	FOCAL	3	"CELSR1,CERK,GRAMD4"
TCGA.AA.3844	22	46919760	47114520	74	0.5034	SMALL-GAIN	FOCAL	3	"CELSR1,CERK,GRAMD4"
TCGA.AA.3941	22	48389479	49710059	763	0.6679	SMALL-GAIN	FOCAL	1	FAM19A5
TCGA.AM.5820	22	48873544	49157592	140	0.6349	SMALL-GAIN	FOCAL	1	FAM19A5
TCGA.AG.A01W.01A	22	48957447	49411876	159	0.4486	SMALL-GAIN	FOCAL	1	FAM19A5
TCGA.AA.A00L.01A	22	50832310	50861844	8	0.6042	SMALL-GAIN	FOCAL	1	PPP6R2
TCGA.AA.3862.01A	22	50857284	50904728	30	0.5235	SMALL-GAIN	FOCAL	2	"PPP6R2,SBF1"
TCGA.AA.3861.01A	22	50857284	50905747	29	0.4034	SMALL-GAIN	FOCAL	2	"PPP6R2,SBF1"
TCGA.AG.A015.01A	22	50876552	50905747	16	0.4911	SMALL-GAIN	FOCAL	2	"PPP6R2,SBF1"
TCGA.AG.3611.01A	23	2139035	2692667	21	0.5975	SMALL-GAIN	FOCAL	4	"CD99,DHRSX,XG,ZBED1"
TCGA.AA.3509.01A	23	2656020	2724664	10	0.5975	SMALL-GAIN	FOCAL	2	"CD99,XG"
TCGA.AA.3812	23	2703632	3214175	216	0.5342	SMALL-GAIN	FOCAL	6	"ARSD,ARSE,ARSF,ARSH,GYG2,XG"
TCGA.AA.3941	23	2703632	3214175	214	0.4506	SMALL-GAIN	FOCAL	6	"ARSD,ARSE,ARSF,ARSH,GYG2,XG"
TCGA.EI.7002	23	2703632	3569358	373	0.5267	SMALL-GAIN	FOCAL	8	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,PRKX,XG"
TCGA.D5.5538	23	2703632	3998040	448	0.4114	SMALL-GAIN	FOCAL	8	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,PRKX,XG"
TCGA.CL.5917	23	2703632	6347859	1475	0.5349	SMALL-GAIN	FOCAL	9	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,XG"
TCGA.A6.6650	23	2703632	6457670	1392	0.5011	SMALL-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.D5.6533	23	2703632	6479206	1521	0.5644	SMALL-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.AD.6965	23	2703632	6570852	1521	0.3828	SMALL-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.DM.A0X9	23	2703632	6642105	1569	0.4053	SMALL-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.QL.A97D	23	2703632	6706158	1591	0.4342	SMALL-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.DC.6682	23	2703632	6899462	1645	0.5617	SMALL-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.F4.6459	23	2703632	6905453	1662	0.5756	SMALL-GAIN	FOCAL	10	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.CK.5914.01A	23	2748136	2827809	14	0.5006	SMALL-GAIN	FOCAL	2	"ARSD,GYG2"
TCGA.AG.A01W.01A	23	2758137	2789547	7	0.6506	SMALL-GAIN	FOCAL	1	GYG2
TCGA.AG.A00C.01A	23	2832614	2873408	14	0.6761	SMALL-GAIN	FOCAL	2	"ARSD,ARSE"
TCGA.AG.3909.01A	23	2873408	3030165	22	0.4568	SMALL-GAIN	FOCAL	3	"ARSE,ARSF,ARSH"
TCGA.AA.A01Q.01A	23	2924602	7177340	42	0.5372	SMALL-GAIN	FOCAL	8	"ARSF,ARSH,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A"
TCGA.AA.3941	23	3220670	3369879	76	0.3985	SMALL-GAIN	FOCAL	1	MXRA5
TCGA.AG.A00C.01A	23	3227720	3544411	10	0.6096	SMALL-GAIN	FOCAL	2	"MXRA5,PRKX"
TCGA.AA.3812	23	3241049	7260655	1530	0.5057	SMALL-GAIN	FOCAL	6	"HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A"
TCGA.CK.5914.01A	23	3530189	7812007	32	0.6692	SMALL-GAIN	FOCAL	6	"HDHD1,NLGN4X,PRKX,STS,VCX,VCX3A"
TCGA.AA.3967.01A	23	6069045	8761648	36	0.4054	SMALL-GAIN	FOCAL	10	"ANOS1,FAM9A,HDHD1,NLGN4X,PNPLA4,STS,VCX,VCX2,VCX3A,VCX3B"
TCGA.SS.A7HO	23	6819448	6988197	69	0.464	SMALL-GAIN	FOCAL	1	HDHD1
TCGA.AG.3592	23	7059035	7414217	101	0.6552	SMALL-GAIN	FOCAL	2	"HDHD1,STS"
TCGA.AG.A026	23	7533099	9578062	744	0.6032	SMALL-GAIN	FOCAL	8	"ANOS1,FAM9A,FAM9B,PNPLA4,TBL1X,VCX,VCX2,VCX3B"
TCGA.A6.2683	23	7830916	7839975	11	0.4671	SMALL-GAIN	FOCAL	0	None
TCGA.CK.5914.01A	23	8138025	8699833	16	0.5959	SMALL-GAIN	FOCAL	3	"ANOS1,VCX2,VCX3B"
TCGA.DC.6158	23	9775625	9824196	19	0.4353	SMALL-GAIN	FOCAL	1	SHROOM2
TCGA.AG.A00C.01A	23	11777882	11793082	12	0.6468	SMALL-GAIN	FOCAL	1	MSL3
TCGA.AA.A00N.01A	23	12837584	12937143	9	0.622	SMALL-GAIN	FOCAL	3	"PRPS2,TLR7,TLR8"
TCGA.CK.5914.01A	23	13061791	13621388	8	0.3912	SMALL-GAIN	FOCAL	3	"ATXN3L,EGFL6,FAM9C"
TCGA.AA.A00N.01A	23	13764386	14863000	41	0.5677	SMALL-GAIN	FOCAL	5	"FANCB,GEMIN8,GLRA2,GPM6B,OFD1"
TCGA.AA.A00N.01A	23	15709294	15827275	19	0.4823	SMALL-GAIN	FOCAL	2	"CA5B,ZRSR2"
TCGA.AG.4009.01A	23	16142080	16863091	41	0.4926	SMALL-GAIN	FOCAL	7	"CTPS2,GRPR,MAGEB17,RBBP7,S100G,SYAP1,TXLNG"
TCGA.AG.3611.01A	23	16635225	16716317	14	0.5313	SMALL-GAIN	FOCAL	2	"CTPS2,S100G"
TCGA.AA.3862.01A	23	17762227	19363804	135	0.6076	SMALL-GAIN	FOCAL	10	"ADGRG2,BEND2,CDKL5,PDHA1,PHKA2,PPEF1,RAI2,RS1,SCML1,SCML2"
TCGA.F5.6465	23	18064759	18078889	10	0.4636	SMALL-GAIN	FOCAL	0	None
TCGA.AG.A00C.01A	23	19001914	19026056	11	0.6472	SMALL-GAIN	FOCAL	2	"ADGRG2,PHKA2"
TCGA.AG.A00C.01A	23	19764385	20034173	21	0.5325	SMALL-GAIN	FOCAL	3	"CXorf23,MAP7D2,SH3KBP1"
TCGA.CK.5914.01A	23	20159674	21627172	42	0.6131	SMALL-GAIN	FOCAL	3	"CNKSR2,EIF1AX,RPS6KA3"
TCGA.AA.A01C.01A	23	21444563	21515835	6	0.6356	SMALL-GAIN	FOCAL	1	CNKSR2
TCGA.AG.A00C.01A	23	21659554	21871447	11	0.599	SMALL-GAIN	FOCAL	4	"CNKSR2,KLHL34,MBTPS2,SMPX"
TCGA.AA.3844	23	21694672	22312114	237	0.5233	SMALL-GAIN	FOCAL	6	"MBTPS2,PHEX,SMPX,SMS,YY2,ZNF645"
TCGA.AA.A00N.01A	23	21886538	23685666	48	0.4917	SMALL-GAIN	FOCAL	7	"DDX53,MBTPS2,PHEX,PRDX4,PTCHD1,SMS,ZNF645"
TCGA.CK.5914.01A	23	22010663	22245573	22	0.6653	SMALL-GAIN	FOCAL	2	"PHEX,SMS"
TCGA.CL.5917	23	22852104	23520609	312	0.5297	SMALL-GAIN	FOCAL	2	"DDX53,PTCHD1"
TCGA.AA.3844	23	23495801	24191520	236	0.6584	SMALL-GAIN	FOCAL	8	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,PRDX4,SAT1,ZFX"
TCGA.AG.A01W.01A	23	23663909	23713320	4	0.4001	SMALL-GAIN	FOCAL	1	PRDX4
TCGA.AG.A00C.01A	23	23689596	24331388	61	0.6408	SMALL-GAIN	FOCAL	9	"ACOT9,APOO,CXorf58,EIF2S3,KLHL15,PRDX4,SAT1,SUPT20HL2,ZFX"
TCGA.AA.A00N.01A	23	24197307	24712011	33	0.4478	SMALL-GAIN	FOCAL	5	"PCYT1B,PDK3,SUPT20HL1,SUPT20HL2,ZFX"
TCGA.AA.3844	23	24222807	25404456	295	0.4917	SMALL-GAIN	FOCAL	7	"ARX,PCYT1B,PDK3,POLA1,SUPT20HL1,SUPT20HL2,ZFX"
TCGA.CK.5914.01A	23	24382555	24712011	23	0.599	SMALL-GAIN	FOCAL	3	"PCYT1B,PDK3,SUPT20HL1"
TCGA.AG.A00C.01A	23	24745862	24763498	10	0.5109	SMALL-GAIN	FOCAL	1	POLA1
TCGA.DT.5265	23	25687934	25814127	50	0.6697	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3844	23	30542999	31044447	124	0.5421	SMALL-GAIN	FOCAL	3	"CXorf21,GK,TAB3"
TCGA.AA.3844	23	31226753	31602894	147	0.3962	SMALL-GAIN	FOCAL	1	DMD
TCGA.AA.A017.01A	23	31947705	32486568	25	0.4799	SMALL-GAIN	FOCAL	1	DMD
TCGA.AA.A017.01A	23	35644251	37670022	53	0.4578	SMALL-GAIN	FOCAL	8	"CFAP47,CYBB,FAM47C,FTH1P18,LANCL3,MAGEB16,PRRG1,XK"
TCGA.AG.3909.01A	23	38008937	38037468	9	0.4938	SMALL-GAIN	FOCAL	1	SRPX
TCGA.AA.A00D.01A	23	38240576	39930195	24	0.4461	SMALL-GAIN	FOCAL	4	"BCOR,MID1IP1,OTC,TSPAN7"
TCGA.AG.A00C.01A	23	38546791	39914569	6	0.5637	SMALL-GAIN	FOCAL	3	"BCOR,MID1IP1,TSPAN7"
TCGA.AA.3844	23	39385047	41373460	462	0.6409	SMALL-GAIN	FOCAL	9	"ATP6AP2,BCOR,CXorf38,DDX3X,MED14,MED14OS,MPC1L,NYX,USP9X"
TCGA.CK.5914.01A	23	40525960	41055456	48	0.4246	SMALL-GAIN	FOCAL	3	"MED14,MED14OS,USP9X"
TCGA.AA.A00N.01A	23	40982830	41048535	24	0.5862	SMALL-GAIN	FOCAL	1	USP9X
TCGA.AA.3941	23	44123776	44338548	66	0.3928	SMALL-GAIN	FOCAL	1	EFHC2
TCGA.AA.3941	23	44573270	45125003	86	0.472	SMALL-GAIN	FOCAL	3	"CXorf36,DUSP21,KDM6A"
TCGA.AG.A00C.01A	23	44879806	44921845	10	0.6551	SMALL-GAIN	FOCAL	1	KDM6A
TCGA.AA.A00N.01A	23	44922745	46913543	64	0.6659	SMALL-GAIN	FOCAL	8	"CHST7,CXorf36,JADE3,KDM6A,KRBOX4,RP2,SLC9A7,ZNF674"
TCGA.AA.3941	23	45624823	45826754	57	0.4062	SMALL-GAIN	FOCAL	0	None
TCGA.AG.4009.01A	23	47092264	47422314	22	0.6129	SMALL-GAIN	FOCAL	4	"ARAF,USP11,ZNF157,ZNF41"
TCGA.AG.3909.01A	23	47230006	47326754	9	0.4608	SMALL-GAIN	FOCAL	2	"ZNF157,ZNF41"
TCGA.AA.A00L.01A	23	47478704	47488872	9	0.4223	SMALL-GAIN	FOCAL	2	"CFP,SYN1"
TCGA.AG.4009.01A	23	47500579	47970615	29	0.462	SMALL-GAIN	FOCAL	7	"ELK1,SPACA5,SPACA5B,UXT,ZNF182,ZNF630,ZNF81"
TCGA.AA.3844	23	47525253	47725859	48	0.462	SMALL-GAIN	FOCAL	1	ZNF81
TCGA.AA.3930.01A	23	47747366	48209371	40	0.4491	SMALL-GAIN	FOCAL	8	"SPACA5,SPACA5B,SSX1,SSX3,SSX5,ZNF182,ZNF630,ZNF81"
TCGA.AA.A01Q.01A	23	48047015	48340744	35	0.4008	SMALL-GAIN	FOCAL	7	"FTSJ1,SLC38A5,SSX1,SSX3,SSX4,SSX4B,SSX5"
TCGA.AA.A017.01A	23	48457690	48463189	5	0.431	SMALL-GAIN	FOCAL	1	WDR13
TCGA.AA.3930.01A	23	48460144	48547018	10	0.5516	SMALL-GAIN	FOCAL	2	"WAS,WDR13"
TCGA.AG.A015.01A	23	48549424	48565791	5	0.4133	SMALL-GAIN	FOCAL	2	"SUV39H1,WAS"
TCGA.AG.A01L.01A	23	48549424	48565791	5	0.5952	SMALL-GAIN	FOCAL	2	"SUV39H1,WAS"
TCGA.AG.4009.01A	23	48629301	48666412	11	0.6171	SMALL-GAIN	FOCAL	3	"GATA1,GLOD5,HDAC6"
TCGA.AA.3930.01A	23	48759944	48849803	36	0.3968	SMALL-GAIN	FOCAL	6	"GRIPAP1,KCND1,OTUD5,PIM2,PQBP1,SLC35A2"
TCGA.AG.4009.01A	23	48771655	48832643	19	0.3808	SMALL-GAIN	FOCAL	4	"GRIPAP1,KCND1,OTUD5,PIM2"
TCGA.AG.A01W.01A	23	48806679	48820984	13	0.5213	SMALL-GAIN	FOCAL	2	"KCND1,OTUD5"
TCGA.CK.5914.01A	23	48832399	48888865	19	0.6283	SMALL-GAIN	FOCAL	2	"GRIPAP1,TFE3"
TCGA.AA.A02J.01A	23	48841669	48896591	17	0.6025	SMALL-GAIN	FOCAL	2	"GRIPAP1,TFE3"
TCGA.A6.3808.01A	23	48846016	49047866	59	0.6081	SMALL-GAIN	FOCAL	10	"CCDC120,GPKOW,GRIPAP1,MAGIX,PLP2,PRAF2,PRICKLE3,SYP,TFE3,WDR45"
TCGA.AG.A01W.01A	23	48916373	48927080	9	0.5636	SMALL-GAIN	FOCAL	1	CCDC120
TCGA.AA.A00L.01A	23	48919741	48931426	10	0.5722	SMALL-GAIN	FOCAL	2	"CCDC120,PRAF2"
TCGA.CK.5914.01A	23	48970517	49019139	9	0.6521	SMALL-GAIN	FOCAL	1	GPKOW
TCGA.AG.A01W.01A	23	48971396	48980466	10	0.4297	SMALL-GAIN	FOCAL	1	GPKOW
TCGA.AG.A01L.01A	23	49850948	50056802	20	0.4464	SMALL-GAIN	FOCAL	3	"AKAP4,CCNB3,CLCN5"
TCGA.AA.A017.01A	23	49854793	50136112	43	0.4512	SMALL-GAIN	FOCAL	4	"AKAP4,CCNB3,CLCN5,DGKK"
TCGA.AA.3980.01A	23	50094566	50146010	23	0.4899	SMALL-GAIN	FOCAL	2	"CCNB3,DGKK"
TCGA.AA.3930.01A	23	50121049	50131470	10	0.6263	SMALL-GAIN	FOCAL	1	DGKK
TCGA.AG.A01W.01A	23	50455490	51661483	21	0.5391	SMALL-GAIN	FOCAL	7	"BMP15,CXorf67,GSPT2,MAGED1,NUDT10,NUDT11,SHROOM4"
TCGA.A6.3808.01A	23	53222207	53600673	98	0.4861	SMALL-GAIN	FOCAL	6	"HSD17B10,HUWE1,IQSEC2,KDM5C,RIBC1,SMC1A"
TCGA.AG.3906.01A	23	53239569	53249958	8	0.4573	SMALL-GAIN	FOCAL	1	KDM5C
TCGA.AA.A00N.01A	23	53243832	53435945	36	0.5054	SMALL-GAIN	FOCAL	3	"IQSEC2,KDM5C,SMC1A"
TCGA.AG.3909.01A	23	53308692	53435945	12	0.4334	SMALL-GAIN	FOCAL	2	"IQSEC2,SMC1A"
TCGA.CK.5914.01A	23	53308692	53436304	16	0.6748	SMALL-GAIN	FOCAL	2	"IQSEC2,SMC1A"
TCGA.AG.3906.01A	23	53423157	53441655	9	0.4654	SMALL-GAIN	FOCAL	1	SMC1A
TCGA.AG.A00C.01A	23	53430499	53458754	17	0.6413	SMALL-GAIN	FOCAL	3	"HSD17B10,RIBC1,SMC1A"
TCGA.AG.3909.01A	23	53460631	53589755	31	0.4045	SMALL-GAIN	FOCAL	2	"HSD17B10,HUWE1"
TCGA.AG.A01W.01A	23	53469910	53477906	9	0.6134	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3930.01A	23	53560219	53569362	10	0.6386	SMALL-GAIN	FOCAL	1	HUWE1
TCGA.AG.4009.01A	23	53560219	53577575	17	0.4634	SMALL-GAIN	FOCAL	1	HUWE1
TCGA.AG.A01W.01A	23	53594620	53602310	7	0.5331	SMALL-GAIN	FOCAL	1	HUWE1
TCGA.AG.3906.01A	23	53613745	53642672	17	0.5053	SMALL-GAIN	FOCAL	1	HUWE1
TCGA.AA.A00N.01A	23	53672224	54048644	26	0.4882	SMALL-GAIN	FOCAL	2	"HUWE1,PHF8"
TCGA.AG.A01L.01A	23	53970516	54328171	51	0.4793	SMALL-GAIN	FOCAL	3	"FAM120C,PHF8,WNK3"
TCGA.AG.4009.01A	23	54037504	54117693	13	0.6134	SMALL-GAIN	FOCAL	2	"FAM120C,PHF8"
TCGA.AG.A01L.01A	23	54783437	54817240	7	0.6161	SMALL-GAIN	FOCAL	1	ITIH6
TCGA.AG.A01W.01A	23	54968695	54978047	10	0.5631	SMALL-GAIN	FOCAL	1	PFKFB1
TCGA.AG.3909.01A	23	55032934	55057295	13	0.6388	SMALL-GAIN	FOCAL	2	"ALAS2,APEX2"
TCGA.AG.3611.01A	23	55102419	55116884	5	0.5847	SMALL-GAIN	FOCAL	2	"PAGE2,PAGE2B"
TCGA.AG.4009.01A	23	56276624	57515168	22	0.3877	SMALL-GAIN	FOCAL	6	"FAAH2,KLF8,SPIN2A,SPIN2B,SPIN3,UBQLN2"
TCGA.AA.A00N.01A	23	56291596	57515168	21	0.6558	SMALL-GAIN	FOCAL	6	"FAAH2,KLF8,SPIN2A,SPIN2B,SPIN3,UBQLN2"
TCGA.AF.3914.01A	23	62569902	63563461	24	0.4654	SMALL-GAIN	FOCAL	5	"AMER1,ARHGEF9,ASB12,MTMR8,SPIN4"
TCGA.D5.5541	23	62856173	63303731	31	0.618	SMALL-GAIN	FOCAL	1	ARHGEF9
TCGA.3L.AA1B	23	63816349	66632342	439	0.6338	SMALL-GAIN	FOCAL	7	"EDA2R,HEPH,LAS1L,MSN,VSIG4,ZC3H12B,ZC4H2"
TCGA.AG.A01N.01A	23	64196161	64753442	17	0.5496	SMALL-GAIN	FOCAL	3	"LAS1L,ZC3H12B,ZC4H2"
TCGA.AG.3611.01A	23	64936633	64959550	12	0.5223	SMALL-GAIN	FOCAL	1	MSN
TCGA.AG.A01W.01A	23	65396630	66847919	15	0.6198	SMALL-GAIN	FOCAL	3	"AR,EDA2R,HEPH"
TCGA.AA.A017.01A	23	66764988	67421415	23	0.4575	SMALL-GAIN	FOCAL	2	"AR,OPHN1"
TCGA.AA.A00J.01A	23	69497203	69507553	18	0.6365	SMALL-GAIN	FOCAL	3	"ARR3,PDZD11,RAB41"
TCGA.AA.A00J.01A	23	69549208	69615752	14	0.6262	SMALL-GAIN	FOCAL	1	KIF4A
TCGA.AG.A01W.01A	23	69585415	69590743	9	0.5239	SMALL-GAIN	FOCAL	1	KIF4A
TCGA.CK.5914.01A	23	69606422	69646214	18	0.6272	SMALL-GAIN	FOCAL	2	"GDPD2,KIF4A"
TCGA.AG.4009.01A	23	69625630	69652690	17	0.4691	SMALL-GAIN	FOCAL	2	"GDPD2,KIF4A"
TCGA.AA.A00Q.01A	23	69644808	69711927	21	0.4446	SMALL-GAIN	FOCAL	2	"DLG3,GDPD2"
TCGA.AG.A00C.01A	23	69668689	70072896	45	0.4366	SMALL-GAIN	FOCAL	2	"DLG3,TEX11"
TCGA.AG.3909.01A	23	69698962	69774452	17	0.4069	SMALL-GAIN	FOCAL	2	"DLG3,TEX11"
TCGA.AG.4009.01A	23	69698962	69849414	25	0.6013	SMALL-GAIN	FOCAL	2	"DLG3,TEX11"
TCGA.AA.A00N.01A	23	69711927	69774452	16	0.644	SMALL-GAIN	FOCAL	2	"DLG3,TEX11"
TCGA.AG.4009.01A	23	69960501	70148647	17	0.6224	SMALL-GAIN	FOCAL	2	"SLC7A3,TEX11"
TCGA.AA.A00N.01A	23	70316328	70338568	17	0.5335	SMALL-GAIN	FOCAL	4	"CXorf65,FOXO4,IL2RG,MED12"
TCGA.CK.5914.01A	23	70471348	70613128	35	0.5179	SMALL-GAIN	FOCAL	4	"ITGB1BP2,NONO,TAF1,ZMYM3"
TCGA.AG.A014.01A	23	70836198	71350914	6	0.4766	SMALL-GAIN	FOCAL	5	"CXCR3,CXorf49,CXorf49B,NHSL2,RGAG4"
TCGA.AA.A00N.01A	23	71792454	71877377	23	0.6524	SMALL-GAIN	FOCAL	2	"HDAC8,PHKA1"
TCGA.AG.3891.01A	23	71895872	71924984	4	0.5892	SMALL-GAIN	FOCAL	1	PHKA1
TCGA.AA.3844	23	72947359	74046964	115	0.4842	SMALL-GAIN	FOCAL	4	"KIAA2022,RLIM,SLC16A2,ZCCHC13"
TCGA.AG.3906.01A	23	74636875	74698687	8	0.3974	SMALL-GAIN	FOCAL	1	ZDHHC15
TCGA.CK.5914.01A	23	78216001	79955414	32	0.6108	SMALL-GAIN	FOCAL	6	"BRWD3,FAM46D,GPR174,ITM2A,P2RY10,TBX22"
TCGA.AG.A00C.01A	23	79945208	79980382	17	0.6409	SMALL-GAIN	FOCAL	1	BRWD3
TCGA.AA.A00D.01A	23	80064427	84362627	55	0.6497	SMALL-GAIN	FOCAL	9	"APOOL,BRWD3,CYLC1,HDX,HMGN5,POU3F4,RPS6KA6,SATL1,SH3BGRL"
TCGA.AA.A00D.01A	23	84559312	85156047	19	0.4945	SMALL-GAIN	FOCAL	2	"CHM,POF1B"
TCGA.AG.3898	23	88402566	90287714	228	0.509	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.DC.6158	23	88431670	89102165	93	0.4883	SMALL-GAIN	FOCAL	0	None
TCGA.AA.A02Y	23	88431670	90255003	215	0.3883	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.AD.A5EK	23	88442216	90255003	202	0.4509	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.G5.6572	23	88443281	90321117	221	0.6297	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.DM.A28C	23	88444083	89231832	92	0.5169	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.F5.6813	23	88444179	90287714	207	0.5874	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.G4.6294	23	88468320	90280480	203	0.3966	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.D5.6536	23	88468320	90282937	204	0.528	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.AA.3688	23	88468320	90288179	207	0.4656	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.AH.6903	23	88499791	90751925	320	0.4494	SMALL-GAIN	FOCAL	2	"PABPC5,TGIF2LX"
TCGA.D5.6931	23	88568456	89232331	76	0.6405	SMALL-GAIN	FOCAL	1	TGIF2LX
TCGA.CM.6169	23	88604175	92364167	477	0.4994	SMALL-GAIN	FOCAL	3	"PABPC5,PCDH11X,TGIF2LX"
TCGA.EI.6511	23	89231832	90733230	240	0.6466	SMALL-GAIN	FOCAL	1	PABPC5
TCGA.AZ.6601	23	89235807	89536669	47	0.6184	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A28C	23	89298968	89340221	10	0.4767	SMALL-GAIN	FOCAL	0	None
TCGA.DM.A28C	23	89365892	90282937	84	0.6638	SMALL-GAIN	FOCAL	0	None
TCGA.NH.A50U	23	90174303	90710244	129	0.601	SMALL-GAIN	FOCAL	1	PABPC5
TCGA.5M.AAT4	23	90281494	90751925	127	0.6664	SMALL-GAIN	FOCAL	1	PABPC5
TCGA.AZ.6601	23	90287714	90751925	124	0.6239	SMALL-GAIN	FOCAL	1	PABPC5
TCGA.AA.3488	23	90303571	90711047	115	0.392	SMALL-GAIN	FOCAL	1	PABPC5
TCGA.AG.4008	23	90751925	91426770	51	0.4754	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.DM.A28C	23	90753246	91433860	61	0.6298	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.D5.6931	23	90772505	91431002	51	0.5829	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.F5.6810	23	91426770	91727187	83	0.5748	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.AH.6903	23	91430328	92384990	130	0.3944	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.AZ.6601	23	91431002	95814458	1018	0.548	SMALL-GAIN	FOCAL	3	"FAM133A,NAP1L3,PCDH11X"
TCGA.D5.6931	23	91460422	91470049	6	0.6134	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.4N.A93T	23	91467034	92266830	89	0.4409	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.AD.A5EK	23	91526733	92464507	94	0.4396	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.AG.4008	23	91570045	92426094	71	0.5117	SMALL-GAIN	FOCAL	1	PCDH11X
TCGA.DC.5337	23	92364167	92420594	8	0.5866	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	23	99657515	99848863	7	0.5272	SMALL-GAIN	FOCAL	2	"PCDH19,TNMD"
TCGA.CK.5914.01A	23	99905724	100177740	50	0.5245	SMALL-GAIN	FOCAL	5	"CSTF2,NOX1,SRPX2,SYTL4,XKRX"
TCGA.AG.3906.01A	23	99944806	99956885	7	0.4698	SMALL-GAIN	FOCAL	1	SYTL4
TCGA.AG.3906.01A	23	100118425	100384916	36	0.492	SMALL-GAIN	FOCAL	6	"ARL13A,CENPI,NOX1,TMEM35,TRMT2B,XKRX"
TCGA.AG.3909.01A	23	100486598	100515439	22	0.5976	SMALL-GAIN	FOCAL	1	DRP2
TCGA.AG.3891.01A	23	100524103	100542413	12	0.3943	SMALL-GAIN	FOCAL	1	TAF7L
TCGA.AG.3906.01A	23	100524103	100547751	13	0.568	SMALL-GAIN	FOCAL	1	TAF7L
TCGA.AG.A01W.01A	23	101655604	102204450	16	0.4889	SMALL-GAIN	FOCAL	10	"ARMCX5,ARMCX5-GPRASP2,BHLHB9,GPRASP1,GPRASP2,NXF2,NXF2B,RAB40AL,TCP11X2,TMSB15A"
TCGA.AA.A02K.01A	23	102317794	102565238	16	0.5512	SMALL-GAIN	FOCAL	6	"BEX1,BEX2,BEX4,NXF3,TCEAL5,TCEAL8"
TCGA.AG.3611.01A	23	102931057	103045392	11	0.5058	SMALL-GAIN	FOCAL	4	"GLRA4,MORF4L2,PLP1,TMEM31"
TCGA.AG.3909.01A	23	102962275	103045392	16	0.4712	SMALL-GAIN	FOCAL	3	"GLRA4,PLP1,TMEM31"
TCGA.AA.A00K.01A	23	102968398	103219063	11	0.4285	SMALL-GAIN	FOCAL	5	"GLRA4,PLP1,RAB9B,TMEM31,TMSB15B"
TCGA.AG.3891.01A	23	103494867	103499408	5	0.6135	SMALL-GAIN	FOCAL	1	ESX1
TCGA.AG.A01W.01A	23	105038820	106031964	70	0.4041	SMALL-GAIN	FOCAL	5	"CXorf57,MUM1L1,NRK,RNF128,SERPINA7"
TCGA.CK.4947	23	105431820	106136909	86	0.3868	SMALL-GAIN	FOCAL	4	"CXorf57,MUM1L1,RNF128,TBC1D8B"
TCGA.AA.A00Q.01A	23	106143927	106397288	27	0.6452	SMALL-GAIN	FOCAL	5	"CLDN2,MORC4,NUP62CL,RBM41,RIPPLY1"
TCGA.AG.3909.01A	23	107224298	107310159	4	0.4131	SMALL-GAIN	FOCAL	2	"TEX13B,VSIG1"
TCGA.AA.A00D.01A	23	107396809	107431705	24	0.3934	SMALL-GAIN	FOCAL	2	"ATG4A,COL4A6"
TCGA.AG.3909.01A	23	107400193	107435671	27	0.5765	SMALL-GAIN	FOCAL	1	COL4A6
TCGA.AA.A017.01A	23	107435671	108718406	88	0.4143	SMALL-GAIN	FOCAL	4	"COL4A5,COL4A6,GUCY2F,IRS4"
TCGA.AG.A014.01A	23	107811840	107829832	12	0.6391	SMALL-GAIN	FOCAL	1	COL4A5
TCGA.AG.3906.01A	23	108904720	109416441	18	0.4092	SMALL-GAIN	FOCAL	2	"ACSL4,TMEM164"
TCGA.CK.5914.01A	23	110951208	114384372	74	0.6741	SMALL-GAIN	FOCAL	9	"ALG13,AMOT,HTR2C,IL13RA2,LHFPL1,LRCH2,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AA.A017.01A	23	114082554	114414011	24	0.6012	SMALL-GAIN	FOCAL	3	"HTR2C,IL13RA2,LRCH2"
TCGA.AG.A01W.01A	23	114290600	114447029	17	0.5624	SMALL-GAIN	FOCAL	2	"LRCH2,RBMXL3"
TCGA.AG.A008.01A	23	114400367	114426288	8	0.4778	SMALL-GAIN	FOCAL	2	"LRCH2,RBMXL3"
TCGA.AG.A00C.01A	23	114414011	114844512	11	0.6026	SMALL-GAIN	FOCAL	4	"LRCH2,LUZP4,PLS3,RBMXL3"
TCGA.AA.3860	23	114918394	118339182	1085	0.4276	SMALL-GAIN	FOCAL	10	"AGTR2,CT83,DOCK11,IL13RA1,KIAA1210,KLHL13,LONRF3,SLC6A14,WDR44,ZCCHC12"
TCGA.F4.6460	23	115015115	118338864	1072	0.5402	SMALL-GAIN	FOCAL	10	"AGTR2,CT83,DOCK11,IL13RA1,KIAA1210,KLHL13,LONRF3,SLC6A14,WDR44,ZCCHC12"
TCGA.AA.3973	23	116179719	116201539	21	0.5256	SMALL-GAIN	FOCAL	0	None
TCGA.AA.3941	23	117223726	118460469	367	0.617	SMALL-GAIN	FOCAL	8	"DOCK11,IL13RA1,KIAA1210,KLHL13,LONRF3,PGRMC1,WDR44,ZCCHC12"
TCGA.AA.A00N.01A	23	118230418	118284222	8	0.5428	SMALL-GAIN	FOCAL	1	KIAA1210
TCGA.AG.3906.01A	23	118715414	118759242	9	0.667	SMALL-GAIN	FOCAL	3	"NKRF,SEPT6,UBE2A"
TCGA.AG.A00C.01A	23	118971698	119394695	38	0.6425	SMALL-GAIN	FOCAL	10	"AKAP14,NDUFA1,NKAP,RHOXF1,RHOXF2,RHOXF2B,RNF113A,TMEM255A,UPF3B,ZBTB33"
TCGA.AA.3941	23	119149012	119558831	77	0.4868	SMALL-GAIN	FOCAL	6	"ATP1B4,RHOXF1,RHOXF2,RHOXF2B,TMEM255A,ZBTB33"
TCGA.AA.3844	23	119260891	119401761	22	0.6318	SMALL-GAIN	FOCAL	4	"RHOXF2,RHOXF2B,TMEM255A,ZBTB33"
TCGA.AG.3909.01A	23	119445049	119512480	8	0.4505	SMALL-GAIN	FOCAL	2	"ATP1B4,TMEM255A"
TCGA.AA.3941	23	119564880	119911684	100	0.5586	SMALL-GAIN	FOCAL	4	"C1GALT1C1,CUL4B,LAMP2,MCTS1"
TCGA.AA.3982	23	119568202	119887143	95	0.3926	SMALL-GAIN	FOCAL	4	"C1GALT1C1,CUL4B,LAMP2,MCTS1"
TCGA.AA.3844	23	119568202	119911684	99	0.4535	SMALL-GAIN	FOCAL	4	"C1GALT1C1,CUL4B,LAMP2,MCTS1"
TCGA.AF.2692	23	121958036	122810311	332	0.584	SMALL-GAIN	FOCAL	2	"GRIA3,THOC2"
TCGA.AA.A00N.01A	23	122536823	122829821	37	0.5763	SMALL-GAIN	FOCAL	2	"GRIA3,THOC2"
TCGA.AG.A01W.01A	23	122606068	122664915	11	0.4522	SMALL-GAIN	FOCAL	1	GRIA3
TCGA.AA.3941	23	122722455	122900973	21	0.6042	SMALL-GAIN	FOCAL	1	THOC2
TCGA.AA.3941	23	123159371	123589381	120	0.4928	SMALL-GAIN	FOCAL	3	"SH2D1A,STAG2,TENM1"
TCGA.AA.A00D.01A	23	123514404	128631785	50	0.6674	SMALL-GAIN	FOCAL	7	"ACTRT1,DCAF12L1,DCAF12L2,LOC100129520,PRR32,SMARCA1,TENM1"
TCGA.AA.A00K.01A	23	128696309	128948597	48	0.6094	SMALL-GAIN	FOCAL	5	"APLN,OCRL,SASH3,XPNPEP2,ZDHHC9"
TCGA.AA.A00D.01A	23	128710267	128945332	39	0.5688	SMALL-GAIN	FOCAL	5	"APLN,OCRL,SASH3,XPNPEP2,ZDHHC9"
TCGA.AA.A010.01A	23	128788493	128876032	3	0.6576	SMALL-GAIN	FOCAL	2	"APLN,XPNPEP2"
TCGA.AG.3906.01A	23	128962906	129290383	49	0.4409	SMALL-GAIN	FOCAL	5	"AIFM1,BCORL1,ELF4,UTP14A,ZDHHC9"
TCGA.AG.3891.01A	23	129041294	129063300	11	0.5196	SMALL-GAIN	FOCAL	1	UTP14A
TCGA.AG.3611.01A	23	129044963	129059887	7	0.6111	SMALL-GAIN	FOCAL	1	UTP14A
TCGA.AG.3909.01A	23	129139150	129173064	9	0.5105	SMALL-GAIN	FOCAL	1	BCORL1
TCGA.CK.5914.01A	23	129139150	129173064	10	0.6374	SMALL-GAIN	FOCAL	1	BCORL1
TCGA.AA.A00Q.01A	23	129139150	129318207	37	0.5861	SMALL-GAIN	FOCAL	4	"AIFM1,BCORL1,ELF4,RAB33A"
TCGA.AA.3930.01A	23	129168380	129305996	31	0.5215	SMALL-GAIN	FOCAL	4	"AIFM1,BCORL1,ELF4,RAB33A"
TCGA.AA.A00N.01A	23	130407733	132092230	54	0.6463	SMALL-GAIN	FOCAL	7	"FRMD7,HS6ST2,IGSF1,MBNL3,OR13H1,RAP2C,STK26"
TCGA.CK.5914.01A	23	131188642	133119294	56	0.6735	SMALL-GAIN	FOCAL	9	"FRMD7,GPC3,GPC4,HS6ST2,MBNL3,RAP2C,STK26,TFDP3,USP26"
TCGA.G4.6309	23	132142466	133459907	204	0.5876	SMALL-GAIN	FOCAL	5	"CCDC160,GPC3,GPC4,TFDP3,USP26"
TCGA.CL.5917	23	132473841	132660368	28	0.4695	SMALL-GAIN	FOCAL	1	GPC4
TCGA.AA.A00N.01A	23	134156130	134427639	13	0.4614	SMALL-GAIN	FOCAL	5	"CT55,FAM127A,FAM127B,FAM127C,ZNF75D"
TCGA.AG.A00C.01A	23	135084220	135104698	6	0.518	SMALL-GAIN	FOCAL	1	SLC9A6
TCGA.AG.A00C.01A	23	135302884	135390910	15	0.6386	SMALL-GAIN	FOCAL	2	"ADGRG4,MAP7D3"
TCGA.AA.A00N.01A	23	135404895	135498595	24	0.5717	SMALL-GAIN	FOCAL	1	ADGRG4
TCGA.AA.3844	23	135444919	135599018	45	0.4458	SMALL-GAIN	FOCAL	3	"ADGRG4,BRS3,HTATSF1"
TCGA.AG.A00C.01A	23	135498595	135618153	15	0.64	SMALL-GAIN	FOCAL	4	"ADGRG4,BRS3,HTATSF1,VGLL1"
TCGA.AA.A00N.01A	23	135618153	135814195	26	0.6371	SMALL-GAIN	FOCAL	3	"ARHGEF6,CD40LG,VGLL1"
TCGA.AA.3844	23	135755100	136122116	63	0.4762	SMALL-GAIN	FOCAL	3	"ARHGEF6,GPR101,RBMX"
TCGA.AG.3611.01A	23	135956311	135961428	6	0.5488	SMALL-GAIN	FOCAL	1	RBMX
TCGA.AA.A00L.01A	23	136112255	138444269	13	0.5874	SMALL-GAIN	FOCAL	3	"FGF13,GPR101,ZIC3"
TCGA.AA.3941	23	136484785	136858446	90	0.4112	SMALL-GAIN	FOCAL	1	ZIC3
TCGA.A6.3808.01A	23	137714994	138819849	47	0.6036	SMALL-GAIN	FOCAL	4	"ATP11C,F9,FGF13,MCF2"
TCGA.AA.3941	23	148487438	149101990	93	0.5314	SMALL-GAIN	FOCAL	10	"CXorf40A,CXorf40B,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,TMEM185A"
TCGA.AG.A00C.01A	23	148568418	149100712	20	0.665	SMALL-GAIN	FOCAL	10	"CXorf40A,CXorf40B,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,TMEM185A"
TCGA.CA.5254	23	148885269	149014682	25	0.4131	SMALL-GAIN	FOCAL	1	MAGEA8
TCGA.AA.3941	23	149313434	149805496	163	0.5406	SMALL-GAIN	FOCAL	2	"MAMLD1,MTM1"
TCGA.AG.3885	23	149518973	150414174	320	0.5499	SMALL-GAIN	FOCAL	6	"CD99L2,GPR50,HMGB3,MAMLD1,MTM1,MTMR1"
TCGA.AA.A010.01A	23	149930991	149945845	5	0.5653	SMALL-GAIN	FOCAL	2	"CD99L2,MTMR1"
TCGA.AA.A00L.01A	23	150154482	150769941	8	0.5027	SMALL-GAIN	FOCAL	4	"GPR50,HMGB3,PASD1,VMA21"
TCGA.CK.5914.01A	23	150780083	150844422	13	0.6694	SMALL-GAIN	FOCAL	1	PASD1
TCGA.CK.5914.01A	23	150891071	151806627	35	0.4423	SMALL-GAIN	FOCAL	8	"CNGA2,FATE1,GABRA3,GABRE,MAGEA10,MAGEA10-MAGEA5,MAGEA4,MAGEA5"
TCGA.AG.3885	23	151488586	151710370	40	0.4881	SMALL-GAIN	FOCAL	1	GABRA3
TCGA.A6.3808.01A	23	152018758	152037387	6	0.5846	SMALL-GAIN	FOCAL	1	NSDHL
TCGA.AG.4008	23	152193272	152216058	19	0.6506	SMALL-GAIN	FOCAL	0	None
TCGA.AG.3906.01A	23	152614036	152773668	18	0.6385	SMALL-GAIN	FOCAL	5	"BGN,HAUS7,TREX2,ZFP92,ZNF275"
TCGA.AG.A01W.01A	23	152684825	152706067	21	0.6042	SMALL-GAIN	FOCAL	1	ZFP92
TCGA.AG.3906.01A	23	152986276	153138000	51	0.4625	SMALL-GAIN	FOCAL	8	"ABCD1,BCAP31,IDH3G,L1CAM,PDZD4,PLXNB3,SRPK3,SSR4"
TCGA.AA.A01Q.01A	23	153219540	153229992	6	0.4238	SMALL-GAIN	FOCAL	1	HCFC1
TCGA.AG.A01W.01A	23	153230383	153262231	26	0.4655	SMALL-GAIN	FOCAL	2	"HCFC1,TMEM187"
TCGA.AG.A01W.01A	23	153310560	153351982	35	0.4959	SMALL-GAIN	FOCAL	1	MECP2
TCGA.AG.3906.01A	23	153409719	153577165	23	0.4879	SMALL-GAIN	FOCAL	6	"FLNA,OPN1LW,OPN1MW,OPN1MW2,TEX28,TKTL1"
TCGA.AG.A008.01A	23	153589708	153661937	32	0.4727	SMALL-GAIN	FOCAL	6	"ATP6AP1,DNASE1L1,EMD,FLNA,RPL10,TAZ"
TCGA.AA.3982	23	153713096	153950634	30	0.4935	SMALL-GAIN	FOCAL	9	"CTAG1A,CTAG1B,CTAG2,FAM3A,G6PD,GAB3,IKBKG,SLC10A3,UBL4A"
TCGA.AG.3906.01A	23	153735133	153774219	14	0.5779	SMALL-GAIN	FOCAL	3	"FAM3A,G6PD,IKBKG"
TCGA.AA.A01Q.01A	23	153784342	153944252	16	0.419	SMALL-GAIN	FOCAL	5	"CTAG1A,CTAG1B,CTAG2,GAB3,IKBKG"
TCGA.AG.3906.01A	23	153993116	153998987	9	0.4752	SMALL-GAIN	FOCAL	1	DKC1
TCGA.AG.A00C.01A	23	154013289	154158422	24	0.5537	SMALL-GAIN	FOCAL	9	"F8,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,MPP1,SMIM9"
TCGA.AA.A00N.01A	23	154134658	154212915	13	0.6296	SMALL-GAIN	FOCAL	1	F8
TCGA.AA.A00D.01A	23	154563611	155009837	15	0.562	SMALL-GAIN	FOCAL	9	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,SPRY3,TMLHE"
TCGA.AA.A00L.01A	23	155119100	155227341	8	0.5239	SMALL-GAIN	FOCAL	2	"IL9R,VAMP7"
TCGA.AA.A00A.01A	23	155119100	155239443	15	0.5322	SMALL-GAIN	FOCAL	2	"IL9R,VAMP7"
TCGA.AA.A00D.01A	23	155169343	155239443	10	0.6132	SMALL-GAIN	FOCAL	2	"IL9R,VAMP7"
TCGA.AG.3906.01A	23	155227341	155239443	10	0.3998	SMALL-GAIN	FOCAL	1	IL9R
TCGA.AA.A01Q.01A	23	155232505	155239443	7	0.5499	SMALL-GAIN	FOCAL	1	IL9R
TCGA.AA.3861.01A	24	2654981	2821916	9	0.5986	SMALL-GAIN	FOCAL	3	"RPS4Y1,SRY,ZFY"
TCGA.AG.3611.01A	24	2654981	5605281	22	0.5994	SMALL-GAIN	FOCAL	5	"PCDH11Y,RPS4Y1,SRY,TGIF2LY,ZFY"
TCGA.AG.A008.01A	24	4900654	4900654	1	0.6103	SMALL-GAIN	FOCAL	1	PCDH11Y
TCGA.AG.A01W.01A	24	15461661	19613731	2	0.4522	SMALL-GAIN	FOCAL	5	"NLGN4Y,TMSB4Y,UTY,VCY,VCY1B"
TCGA.AA.A01F.01A	24	16936021	21906231	26	0.4244	SMALL-GAIN	FOCAL	9	"CD24,CDY2A,CDY2B,HSFY1,HSFY2,KDM5D,NLGN4Y,XKRY,XKRY2"
TCGA.AZ.4684.01A	1	69079	6215617	725	0.5768	SMALL-GAIN	NONFOCAL	83	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KCNAB2,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NPHP4,OR4F16,OR4F29,OR4F3,OR4F5,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.3660	1	564620	3366492	350	0.4253	SMALL-GAIN	NONFOCAL	67	"ACAP3,ACTRT2,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTC34,TTLL10,UBE2J2,VWA1"
TCGA.AA.3530	1	564620	3539480	374	0.4088	SMALL-GAIN	NONFOCAL	69	"ACAP3,ACTRT2,AGRN,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTC34,TTLL10,UBE2J2,VWA1"
TCGA.AZ.4682	1	564620	5137665	1118	0.4268	SMALL-GAIN	NONFOCAL	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.AA.3941	1	564620	48581509	12879	0.4618	SMALL-GAIN	NONFOCAL	651	Too-Many
TCGA.AH.6549.01A	1	880057	1509799	238	0.4603	SMALL-GAIN	NONFOCAL	35	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,CCNL2,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MRPL20,MXRA8,NOC2L,PERM1,PLEKHN1,PUSL1,RNF223,SCNN1D,SDF4,SSU72,TAS1R3,TMEM240,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.DM.A28H	1	9274445	19663082	2929	0.4035	SMALL-GAIN	NONFOCAL	139	Too-Many
TCGA.AA.A010.01A	1	12342735	13942323	110	0.4627	SMALL-GAIN	NONFOCAL	34	"AADACL3,AADACL4,C1orf158,DHRS3,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PDPN,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,VPS13D"
TCGA.CK.5914.01A	1	12776248	13695547	41	0.676	SMALL-GAIN	NONFOCAL	29	"AADACL3,C1orf158,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,LOC101929983,LOC391003,LOC400736,LOC645382,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9"
TCGA.AA.A00N.01A	1	12952762	13474662	9	0.3926	SMALL-GAIN	NONFOCAL	16	"HNRNPCL2,LOC101929983,LOC391003,LOC400736,LOC645382,PRAMEF10,PRAMEF14,PRAMEF15,PRAMEF19,PRAMEF22,PRAMEF26,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9"
TCGA.AA.A00N.01A	1	22303458	23644959	114	0.5893	SMALL-GAIN	NONFOCAL	16	"C1QA,C1QB,C1QC,C1orf234,CDC42,CELA3A,CELA3B,EPHA8,EPHB2,HNRNPR,HTR1D,KDM1A,LACTBL1,LUZP1,WNT4,ZBTB40"
TCGA.AG.3891.01A	1	27440278	29587125	260	0.3953	SMALL-GAIN	NONFOCAL	38	"AHDC1,ATPIF1,CD164L2,DNAJC8,EPB41,EYA3,FAM76A,FCN3,FGR,GMEB1,GPR3,IFI6,MAP3K6,MECR,MED18,OPRD1,PHACTR4,PPP1R8,PTAFR,PTPRU,RAB42,RCC1,RPA2,SESN2,SLC9A1,SMPDL3B,SRSF4,STX12,SYTL1,TAF12,THEMIS2,TMEM200B,TMEM222,TRNAU1AP,WASF2,WDTC1,XKR8,YTHDF2"
TCGA.CM.4752	1	30895851	34294873	849	0.5023	SMALL-GAIN	NONFOCAL	52	"A3GALT2,ADGRB2,AK2,AZIN2,BSDC1,CCDC28B,COL16A1,CSMD2,DCDC2B,EIF3I,FABP3,FAM167B,FAM229A,FNDC5,HCRTR1,HDAC1,HPCA,IQCC,KHDRBS1,KIAA1522,KPNA6,LAPTM5,LCK,MARCKSL1,MATN1,NKAIN1,PEF1,PHC2,PTP4A2,PUM1,RBBP4,RNF19B,S100PBP,SDC3,SERINC2,SNRNP40,SPOCD1,SYNC,TINAGL1,TMEM234,TMEM39B,TMEM54,TRIM62,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS,ZCCHC17,ZNF362,ZSCAN20"
TCGA.CA.6719	1	31977298	40242444	2063	0.6311	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.AZ.4682	1	32071673	68958674	11262	0.4434	SMALL-GAIN	NONFOCAL	349	Too-Many
TCGA.A6.3808.01A	1	33547821	35369901	145	0.5746	SMALL-GAIN	NONFOCAL	15	"A3GALT2,AZIN2,C1orf94,CSMD2,DLGAP3,GJA4,GJB3,GJB4,GJB5,HMGB4,PHC2,SMIM12,TRIM62,ZNF362,ZSCAN20"
TCGA.CK.5914.01A	1	33837838	35331632	96	0.4409	SMALL-GAIN	NONFOCAL	11	"C1orf94,CSMD2,DLGAP3,GJA4,GJB3,GJB4,GJB5,HMGB4,PHC2,SMIM12,ZSCAN20"
TCGA.AA.3870	1	35411600	36298347	113	0.4191	SMALL-GAIN	NONFOCAL	12	"AGO4,C1orf216,CLSPN,KIAA0319L,NCDN,PSMB2,SFPQ,TFAP2E,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB"
TCGA.AZ.4684.01A	1	35835611	36944964	236	0.5149	SMALL-GAIN	NONFOCAL	23	"ADPRHL2,AGO1,AGO3,AGO4,C1orf216,CLSPN,COL8A2,CSF3R,EVA1B,KIAA0319L,LSM10,MAP7D1,MRPS15,NCDN,OSCP1,PSMB2,SH3D21,STK40,TEKT2,TFAP2E,THRAP3,TRAPPC3,ZMYM4"
TCGA.CM.4752	1	38395946	44438973	1671	0.5136	SMALL-GAIN	NONFOCAL	80	"AKIRIN1,ARTN,BMP8A,BMP8B,C1orf210,C1orf50,CAP1,CCDC23,CCDC30,CDC20,CFAP57,CITED4,CLDN19,COL9A2,CTPS1,DPH2,EBNA1BP2,EDN2,ELOVL1,ERMAP,EXO5,FAM183A,FHL3,FOXJ3,FOXO6,GJA9,GUCA2A,GUCA2B,HEYL,HIVEP3,HPCAL4,HYI,INPP5B,IPO13,KCNQ4,KDM4A,KIAA0754,LOC100129924,MACF1,MED8,MFSD2A,MPL,MYCBP,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,P3H1,PABPC4,POU3F1,PPCS,PPIE,PPIH,PPT1,PTPRF,RHBDL2,RIMKLA,RIMS3,RLF,RRAGC,SCMH1,SF3A3,SLC2A1,SLFNL1,SMAP2,ST3GAL3,SZT2,TIE1,TMCO2,TMEM125,TRIT1,UTP11L,YBX1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684,ZNF691"
TCGA.CA.6719	1	40264145	55789789	3891	0.4336	SMALL-GAIN	NONFOCAL	183	Too-Many
TCGA.DM.A285	1	40357267	45429456	1381	0.3862	SMALL-GAIN	NONFOCAL	76	"ARTN,ATP6V0B,B4GALT2,BEST4,BTBD19,C1orf210,C1orf228,C1orf50,CAP1,CCDC23,CCDC24,CCDC30,CDC20,CFAP57,CITED4,CLDN19,COL9A2,CTPS1,DMAP1,DPH2,EBNA1BP2,EDN2,EIF2B3,ELOVL1,ERI3,ERMAP,EXO5,FAM183A,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,HYI,IPO13,KCNQ4,KDM4A,KIF2C,KLF17,LOC100129924,MED8,MFSD2A,MPL,MYCL,NFYC,P3H1,PLK3,PPCS,PPIH,PPT1,PTCH2,PTPRF,RIMKLA,RIMS3,RLF,RNF220,RPS8,SCMH1,SLC2A1,SLC6A9,SLFNL1,SMAP2,ST3GAL3,SZT2,TCTEX1D4,TIE1,TMCO2,TMEM125,TMEM53,YBX1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684,ZNF691"
TCGA.DM.A28H	1	40994049	43987515	887	0.4165	SMALL-GAIN	NONFOCAL	40	"C1orf210,C1orf50,CCDC23,CCDC30,CDC20,CFAP57,CITED4,CLDN19,CTPS1,EBNA1BP2,EDN2,ELOVL1,ERMAP,FAM183A,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,HYI,KCNQ4,LOC100129924,MED8,MPL,NFYC,P3H1,PPCS,PPIH,RIMKLA,RIMS3,SCMH1,SLC2A1,SLFNL1,SZT2,TIE1,TMEM125,YBX1,ZMYND12,ZNF684,ZNF691"
TCGA.AA.3955	1	41049436	43450728	704	0.3947	SMALL-GAIN	NONFOCAL	27	"C1orf50,CCDC23,CCDC30,CITED4,CLDN19,CTPS1,EDN2,ERMAP,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,KCNQ4,LOC100129924,NFYC,P3H1,PPCS,PPIH,RIMKLA,RIMS3,SCMH1,SLC2A1,SLFNL1,YBX1,ZMYND12,ZNF691"
TCGA.AA.3870	1	42856728	49908643	1868	0.427	SMALL-GAIN	NONFOCAL	98	"AGBL4,AKR1A1,ARTN,ATP6V0B,ATPAF1,B4GALT2,BEND5,BEST4,BTBD19,C1orf210,C1orf228,C1orf50,CCDC17,CCDC23,CCDC24,CCDC30,CDC20,CFAP57,CLDN19,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMAP1,DMBX1,DPH2,EBNA1BP2,EFCAB14,EIF2B3,ELOVL1,ERI3,ERMAP,FAAH,FAM183A,FOXD2,FOXE3,GPBP1L1,HECTD3,HPDL,HYI,IPO13,IPP,KDM4A,KIF2C,KLF17,KNCN,LOC100129924,LRRC41,LURAP1,MAST2,MED8,MKNK1,MMACHC,MOB3C,MPL,MUTYH,NASP,NSUN4,P3H1,PDZK1IP1,PIK3R3,PLK3,POMGNT1,PPCS,PPIH,PRDX1,PTCH2,PTPRF,RAD54L,RIMKLA,RNF220,RPS8,SLC2A1,SLC5A9,SLC6A9,SPATA6,ST3GAL3,STIL,SZT2,TAL1,TCTEX1D4,TESK2,TEX38,TIE1,TMEM125,TMEM53,TMEM69,TOE1,TRABD2B,TSPAN1,UQCRH,UROD,YBX1,ZMYND12,ZNF691,ZSWIM5"
TCGA.AZ.4684.01A	1	44584519	55566460	1112	0.6653	SMALL-GAIN	NONFOCAL	120	Too-Many
TCGA.A6.3808.01A	1	46871654	52257995	301	0.4408	SMALL-GAIN	NONFOCAL	34	"AGBL4,ATPAF1,BEND5,C1orf185,CDKN2C,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,DMBX1,DMRTA2,EFCAB14,ELAVL4,EPS15,FAAH,FAF1,FOXD2,FOXE3,KNCN,MKNK1,MOB3C,NRD1,OSBPL9,PDZK1IP1,RNF11,SLC5A9,SPATA6,STIL,TAL1,TEX38,TRABD2B,TTC39A"
TCGA.DM.A28H	1	47007843	49352176	809	0.4087	SMALL-GAIN	NONFOCAL	22	"AGBL4,ATPAF1,BEND5,CMPK1,CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,EFCAB14,FOXD2,FOXE3,KNCN,MKNK1,MOB3C,PDZK1IP1,SLC5A9,SPATA6,STIL,TAL1,TEX38,TRABD2B"
TCGA.AA.3941	1	53517996	55537197	747	0.4868	SMALL-GAIN	NONFOCAL	32	"ACOT11,BSND,C1orf123,C1orf177,CDCP2,CPT2,CYB5RL,DHCR24,DIO1,DMRTB1,FAM151A,GLIS1,HSPB11,LDLRAD1,LRP8,LRRC42,MAGOH,MROH7,MRPL37,NDC1,PARS2,PCSK9,PODN,SLC1A7,SSBP3,TCEANC2,TMEM59,TMEM61,TTC22,TTC4,USP24,YIPF1"
TCGA.AA.A010.01A	1	53972244	54790989	97	0.4122	SMALL-GAIN	NONFOCAL	13	"CDCP2,CYB5RL,DIO1,GLIS1,HSPB11,LDLRAD1,LRRC42,MRPL37,NDC1,SSBP3,TCEANC2,TMEM59,YIPF1"
TCGA.CK.5914.01A	1	55599688	61892115	196	0.49	SMALL-GAIN	NONFOCAL	16	"C1orf168,C1orf87,C8A,C8B,CYP2J2,DAB1,FGGY,HOOK1,JUN,MYSM1,NFIA,OMA1,PPAP2B,PRKAA2,TACSTD2,USP24"
TCGA.A6.3808.01A	1	62921027	78338662	742	0.3903	SMALL-GAIN	NONFOCAL	63	"ACADM,AK4,AK5,ALG6,ANGPTL3,ANKRD13C,ASB17,ATG4C,C1orf141,CACHD1,CRYZ,CTH,DEPDC1,DIRAS3,DNAJC6,DOCK7,EFCAB7,ERICH3,FAM73A,FOXD3,FPGT,FPGT-TNNI3K,GADD45A,GNG12,HHLA3,IL12RB2,IL23R,INSL5,ITGB3BP,JAK1,LEPR,LEPROT,LHX8,LRRC40,LRRC7,LRRIQ3,MIER1,MSH4,NEGR1,PDE4B,PGM1,PIGK,PTGER3,RABGGTB,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TCTEX1D1,TNNI3K,TYW3,UBE2U,USP33,WDR78,WLS,ZRANB2,ZZZ3"
TCGA.AG.3594	1	70470932	108656698	11491	0.3955	SMALL-GAIN	NONFOCAL	150	Too-Many
TCGA.DM.A28M.01A	1	70611436	91816253	875	0.3803	SMALL-GAIN	NONFOCAL	83	"ACADM,ADGRL2,ADGRL4,AK5,ANKRD13C,ASB17,BARHL2,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CRYZ,CTBS,CTH,CYR61,DDAH1,DNAJB4,DNASE2B,ERICH3,FAM73A,FPGT,FPGT-TNNI3K,FUBP1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GIPC2,GNG5,GTF2B,HFM1,HHLA3,HS2ST1,IFI44,IFI44L,LHX8,LMO4,LOC101927844,LPAR3,LRRC40,LRRC8B,LRRC8C,LRRC8D,LRRIQ3,MCOLN2,MCOLN3,MSH4,NEGR1,NEXN,ODF2L,PIGK,PKN2,PRKACB,PTGER3,PTGFR,RABGGTB,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SLC44A5,SRSF11,SSX2IP,ST6GALNAC3,ST6GALNAC5,SYDE2,TNNI3K,TTLL7,TYW3,USP33,WDR63,ZNF326,ZNF644,ZNHIT6,ZRANB2,ZZZ3"
TCGA.AZ.4682	1	71985956	79322377	2067	0.4012	SMALL-GAIN	NONFOCAL	28	"ACADM,AK5,ASB17,CRYZ,DNAJB4,ERICH3,FAM73A,FPGT,FPGT-TNNI3K,FUBP1,GIPC2,IFI44,IFI44L,LHX8,LRRIQ3,MSH4,NEGR1,NEXN,PIGK,PTGFR,RABGGTB,SLC44A5,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,USP33,ZZZ3"
TCGA.AA.A00N.01A	1	78381709	84946566	141	0.6152	SMALL-GAIN	NONFOCAL	14	"ADGRL2,ADGRL4,DNAJB4,DNASE2B,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PRKACB,PTGFR,RPF1,SAMD13,TTLL7"
TCGA.A6.3808.01A	1	78407667	84877981	124	0.6768	SMALL-GAIN	NONFOCAL	13	"ADGRL2,ADGRL4,DNAJB4,DNASE2B,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PRKACB,PTGFR,SAMD13,TTLL7"
TCGA.AG.3591	1	80361954	249198691	46807	0.4019	SMALL-GAIN	NONFOCAL	1195	Too-Many
TCGA.AZ.4682	1	84384824	90447917	2010	0.4394	SMALL-GAIN	NONFOCAL	42	"BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GNG5,GTF2B,HS2ST1,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,ODF2L,PKN2,PRKACB,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TTLL7,WDR63,ZNHIT6"
TCGA.AZ.4684.01A	1	87108157	90484193	160	0.412	SMALL-GAIN	NONFOCAL	20	"CCBL2,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GTF2B,HS2ST1,LMO4,LOC101927844,LRRC8B,LRRC8C,LRRC8D,PKN2,RBMXL1,SEP15,SH3GLB1,ZNF326"
TCGA.AZ.4682	1	92863972	103674097	3183	0.4202	SMALL-GAIN	NONFOCAL	46	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BCAR3,CCDC18,CDC14A,CNN3,COL11A1,DBT,DNTTIP2,DPH5,DPYD,DR1,EVI5,EXTL2,F3,FAM69A,FNBP1L,FRRS1,GCLM,GFI1,GPR88,HIAT1,LPPR4,LPPR5,LRRC39,MTF2,OLFM3,PALMD,PTBP2,RPL5,RTCA,RWDD3,S1PR1,SASS6,SLC30A7,SLC35A3,SLC44A3,SNX7,TMED5,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
TCGA.AZ.4684.01A	1	103491042	108292047	53	0.4689	SMALL-GAIN	NONFOCAL	11	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,NTNG1,PRMT6,RNPC3,VAV3"
TCGA.AZ.4682	1	104678839	189271385	18538	0.4406	SMALL-GAIN	NONFOCAL	687	Too-Many
TCGA.DM.A1DB	1	111327800	113028270	805	0.4359	SMALL-GAIN	NONFOCAL	21	"ADORA3,ATP5F1,C1orf162,CD53,CEPT1,CHI3L2,CHIA,CTTNBP2NL,DDX20,DENND2D,DRAM2,FAM212B,KCND3,LOC643355,LRIF1,OVGP1,PIFO,RAP1A,TMIGD3,WDR77,WNT2B"
TCGA.AA.3509.01A	1	114165401	115420668	198	0.4194	SMALL-GAIN	NONFOCAL	18	"AMPD1,AP4B1,BCAS2,BCL2L15,CSDE1,DCLRE1B,DENND2C,HIPK1,MAGI3,NRAS,OLFML3,PHTF1,PTPN22,RSBN1,SIKE1,SYCP1,SYT6,TRIM33"
TCGA.AA.3509.01A	1	115576637	117208831	92	0.4798	SMALL-GAIN	NONFOCAL	11	"ATP1A1,CASQ2,CD58,IGSF3,MAB21L3,NGF,NHLH2,SLC22A15,TSHB,TSPAN2,VANGL1"
TCGA.AA.3952	1	117206335	118552925	447	0.619	SMALL-GAIN	NONFOCAL	13	"C1orf137,CD101,CD2,FAM46C,GDAP2,IGSF3,MAN1A2,PTGFRN,SPAG17,TRIM45,TTF2,VTCN1,WDR3"
TCGA.AG.3611.01A	1	117576430	145706626	392	0.396	SMALL-GAIN	NONFOCAL	49	"ADAM30,ANKRD34A,ANKRD35,CD101,CD160,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HFE2,HMGCS2,HSD3B1,HSD3B2,ITGA10,LIX1L,MAN1A2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,NUDT17,PDE4DIP,PEX11B,PHGDH,PIAS3,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4G,RBM8A,REG4,RNF115,SEC22B,SPAG17,TBX15,TRIM45,TTF2,TXNIP,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AF.6136	1	117883833	120523901	804	0.4748	SMALL-GAIN	NONFOCAL	17	"ADAM30,FAM46C,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,MAN1A2,NBPF7,NOTCH2,PHGDH,REG4,SPAG17,TBX15,WARS2,WDR3,ZNF697"
TCGA.F5.6464	1	118139539	149229085	1206	0.3886	SMALL-GAIN	NONFOCAL	61	"ACP6,ADAM30,ANKRD34A,ANKRD35,BCL9,CD160,CHD1L,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,FMO5,GDAP2,GJA5,GJA8,GPR89A,GPR89B,HAO2,HFE2,HMGCS2,HSD3B1,HSD3B2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PHGDH,PIAS3,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PPIAL4G,PRKAB2,RBM8A,REG4,RNF115,SEC22B,SPAG17,TBX15,TXNIP,WARS2,WDR3,ZNF697"
TCGA.AF.2693	1	118253294	120687114	683	0.4254	SMALL-GAIN	NONFOCAL	15	"ADAM30,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF7,NOTCH2,PHGDH,REG4,SPAG17,TBX15,WARS2,WDR3,ZNF697"
TCGA.AA.3509.01A	1	118727639	144911836	156	0.5588	SMALL-GAIN	NONFOCAL	24	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SPAG17,TBX15,WARS2,ZNF697"
TCGA.DM.A28A	1	119962117	145395603	271	0.4617	SMALL-GAIN	NONFOCAL	23	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HMGCS2,HSD3B1,HSD3B2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SEC22B,ZNF697"
TCGA.AG.A026	1	121155527	249198691	34168	0.4055	SMALL-GAIN	NONFOCAL	948	Too-Many
TCGA.AG.A01W.01A	1	144538165	145867208	68	0.4417	SMALL-GAIN	NONFOCAL	23	"ANKRD34A,ANKRD35,CD160,GPR89A,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AA.3666	1	144832254	249198691	34217	0.3993	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.CM.4746	1	144849543	249198691	34176	0.4599	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.DM.A28K	1	144865626	249198691	34094	0.4926	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.AG.A00Y.01A	1	144866541	150923794	489	0.4927	SMALL-GAIN	NONFOCAL	78	"ACP6,ADAMTSL4,ANKRD34A,ANKRD35,ANP32E,APH1A,ARNT,BCL9,BOLA1,C1orf54,CA14,CD160,CHD1L,CIART,CTSK,CTSS,ECM1,ENSA,FCGR1A,FMO5,GJA5,GJA8,GOLPH3L,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,HORMAD1,ITGA10,LIX1L,MCL1,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,OTUD7B,PDE4DIP,PDZK1,PEX11B,PIAS3,PLEKHO1,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,RBM8A,RNF115,RPRD2,SEC22B,SETDB1,SF3B4,SV2A,TARS2,TXNIP,VPS45"
TCGA.5M.AATE	1	144879980	249198691	34190	0.4376	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.AH.6644	1	144879980	249198691	34098	0.4525	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.AA.3679	1	144896318	249198691	34193	0.4013	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.AA.A02Y	1	144901892	249198691	34161	0.4693	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.AA.A010.01A	1	144915407	145611192	132	0.4161	SMALL-GAIN	NONFOCAL	19	"ANKRD34A,ANKRD35,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AA.3509.01A	1	144921818	145752381	143	0.4507	SMALL-GAIN	NONFOCAL	21	"ANKRD34A,ANKRD35,CD160,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.G4.6299	1	144921856	197257089	15561	0.5642	SMALL-GAIN	NONFOCAL	569	Too-Many
TCGA.AA.3994	1	144957814	242202297	32036	0.3895	SMALL-GAIN	NONFOCAL	874	Too-Many
TCGA.AA.3973	1	144957814	249198691	34157	0.5492	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.D5.6536	1	145004742	149852727	419	0.4167	SMALL-GAIN	NONFOCAL	49	"ACP6,ANKRD34A,ANKRD35,BCL9,CD160,CHD1L,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,RBM8A,RNF115,SEC22B,TXNIP"
TCGA.AA.3696	1	145004742	249198691	34196	0.4627	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.AH.6643	1	145013753	249198691	34113	0.5942	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.G4.6311	1	145013753	249198691	34179	0.3827	SMALL-GAIN	NONFOCAL	946	Too-Many
TCGA.AA.3941	1	145382123	146499295	60	0.4629	SMALL-GAIN	NONFOCAL	20	"ANKRD34A,ANKRD35,CD160,GPR89A,HFE2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF20,NUDT17,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,RNF115,TXNIP"
TCGA.BM.6198	1	145382123	150622695	530	0.38485	SMALL-GAIN	NONFOCAL	70	"ACP6,ADAMTSL4,ANKRD34A,ANKRD35,ANP32E,APH1A,BCL9,BOLA1,C1orf54,CA14,CD160,CHD1L,CIART,ECM1,ENSA,FCGR1A,FMO5,GJA5,GJA8,GOLPH3L,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,ITGA10,LIX1L,MCL1,MRPS21,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NUDT17,OTUD7B,PDZK1,PEX11B,PIAS3,PLEKHO1,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,PRPF3,RBM8A,RNF115,RPRD2,SF3B4,SV2A,TARS2,TXNIP,VPS45"
TCGA.F5.6863	1	145382123	162195737	3950	0.3989	SMALL-GAIN	NONFOCAL	390	Too-Many
TCGA.A6.2679	1	145382123	249198691	34146	0.4019	SMALL-GAIN	NONFOCAL	943	Too-Many
TCGA.AF.6672	1	145382123	249198691	34114	0.4585	SMALL-GAIN	NONFOCAL	943	Too-Many
TCGA.DM.A0X9	1	145382123	249198691	34164	0.4308	SMALL-GAIN	NONFOCAL	943	Too-Many
TCGA.DM.A1D4	1	145382123	249198691	34175	0.4436	SMALL-GAIN	NONFOCAL	943	Too-Many
TCGA.AA.3561	1	145395603	214095943	21418	0.4909	SMALL-GAIN	NONFOCAL	720	Too-Many
TCGA.AA.3869	1	145395603	249198691	34134	0.5673	SMALL-GAIN	NONFOCAL	943	Too-Many
TCGA.A6.3808.01A	1	145414749	147415513	191	0.3943	SMALL-GAIN	NONFOCAL	28	"ACP6,ANKRD34A,ANKRD35,BCL9,CD160,CHD1L,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,ITGA10,LIX1L,NBPF10,NBPF11,NBPF12,NBPF20,NUDT17,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PRKAB2,RBM8A,RNF115,TXNIP"
TCGA.EI.6882	1	145416583	249198691	34097	0.3951	SMALL-GAIN	NONFOCAL	943	Too-Many
TCGA.CM.4747	1	145533174	249198691	34134	0.4007	SMALL-GAIN	NONFOCAL	936	Too-Many
TCGA.AG.3611.01A	1	145811846	150235401	132	0.3918	SMALL-GAIN	NONFOCAL	43	"ACP6,ANP32E,BCL9,BOLA1,CA14,CHD1L,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,OTUD7B,PLEKHO1,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRKAB2,SF3B4,SV2A,VPS45"
TCGA.AA.3509.01A	1	145818719	153954830	891	0.4119	SMALL-GAIN	NONFOCAL	172	Too-Many
TCGA.AA.A010.01A	1	147119198	150082572	92	0.3997	SMALL-GAIN	NONFOCAL	32	"ACP6,BOLA1,FCGR1A,GJA5,GJA8,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,MTMR11,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,OTUD7B,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SF3B4,SV2A,VPS45"
TCGA.AA.3941	1	147344260	152045625	446	0.5239	SMALL-GAIN	NONFOCAL	89	"ADAMTSL4,ANP32E,ANXA9,APH1A,ARNT,BNIPL,BOLA1,C1orf54,C1orf56,C2CD4D,CA14,CDC42SE1,CELF3,CERS2,CGN,CIART,CTSK,CTSS,ECM1,ENSA,FAM63A,FCGR1A,GABPB2,GJA8,GOLPH3L,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,HORMAD1,LINGO4,LYSMD1,MCL1,MLLT11,MRPL9,MRPS21,MTMR11,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,OAZ3,OTUD7B,PI4KB,PIP5K1A,PLEKHO1,POGZ,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PRPF3,PRUNE,PSMB4,PSMD4,RFX5,RIIAD1,RORC,RPRD2,S100A10,S100A11,SCNM1,SELENBP1,SEMA6C,SETDB1,SF3B4,SNX27,SV2A,TARS2,TDRKH,THEM4,THEM5,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,TUFT1,VPS45,VPS72,ZNF687"
TCGA.AA.A00Q.01A	1	149400145	149832405	7	0.495	SMALL-GAIN	NONFOCAL	11	"FCGR1A,HIST2H2AA3,HIST2H2AA4,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,PPIAL4A,PPIAL4C"
TCGA.D5.6536	1	149876123	249198691	33768	0.6748	SMALL-GAIN	NONFOCAL	893	Too-Many
TCGA.AA.3862.01A	1	149878194	151070306	294	0.6731	SMALL-GAIN	NONFOCAL	34	"ADAMTSL4,ANP32E,ANXA9,APH1A,ARNT,BNIPL,C1orf54,C1orf56,CA14,CDC42SE1,CERS2,CIART,CTSK,CTSS,ECM1,ENSA,FAM63A,GABPB2,GOLPH3L,HORMAD1,MCL1,MLLT11,MRPS21,MTMR11,OTUD7B,PLEKHO1,PRPF3,PRUNE,RPRD2,SETDB1,SF3B4,SV2A,TARS2,VPS45"
TCGA.AG.3891.01A	1	150238891	150771604	112	0.3967	SMALL-GAIN	NONFOCAL	15	"ADAMTSL4,APH1A,C1orf54,CIART,CTSK,CTSS,ECM1,ENSA,GOLPH3L,HORMAD1,MCL1,MRPS21,PRPF3,RPRD2,TARS2"
TCGA.AG.3611.01A	1	150442990	172502280	2586	0.4537	SMALL-GAIN	NONFOCAL	397	Too-Many
TCGA.BM.6198	1	150674026	211646263	20067	0.41565	SMALL-GAIN	NONFOCAL	631	Too-Many
TCGA.AA.3862.01A	1	151133319	155210398	827	0.5386	SMALL-GAIN	NONFOCAL	139	Too-Many
TCGA.AG.A02G.01A	1	151214897	151735428	120	0.4863	SMALL-GAIN	NONFOCAL	14	"CELF3,CGN,MRPL9,PI4KB,PIP5K1A,POGZ,PSMB4,PSMD4,RFX5,RIIAD1,SELENBP1,SNX27,TUFT1,ZNF687"
TCGA.AG.A00Y.01A	1	151282623	152130217	154	0.5224	SMALL-GAIN	NONFOCAL	23	"C2CD4D,CELF3,CGN,LINGO4,MRPL9,OAZ3,PI4KB,POGZ,PSMB4,RFX5,RIIAD1,RORC,RPTN,S100A10,S100A11,SELENBP1,SNX27,TCHH,TCHHL1,TDRKH,THEM4,THEM5,TUFT1"
TCGA.AA.3664	1	151523578	207424726	18191	0.6653	SMALL-GAIN	NONFOCAL	579	Too-Many
TCGA.AG.A02G.01A	1	152079829	153634832	137	0.4019	SMALL-GAIN	NONFOCAL	62	"C1orf68,CHTOP,CRCT1,CRNN,FLG,FLG2,HRNR,ILF2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,RPTN,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4,TCHH"
TCGA.AG.A025.01A	1	152185515	153309610	83	0.4124	SMALL-GAIN	NONFOCAL	42	"C1orf68,CRCT1,CRNN,FLG,FLG2,HRNR,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.A01Q.01A	1	152276009	153333082	82	0.5052	SMALL-GAIN	NONFOCAL	42	"C1orf68,CRCT1,CRNN,FLG,FLG2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,S100A9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.A6.3810.01A	1	152323059	153318524	63	0.5681	SMALL-GAIN	NONFOCAL	40	"C1orf68,CRCT1,CRNN,FLG2,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AA.A010.01A	1	152815946	153631192	76	0.5262	SMALL-GAIN	NONFOCAL	35	"CHTOP,IVL,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SNAPIN,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.A00Y.01A	1	153309610	157488431	1000	0.5975	SMALL-GAIN	NONFOCAL	128	Too-Many
TCGA.AA.3941	1	153321482	157083920	732	0.5696	SMALL-GAIN	NONFOCAL	125	Too-Many
TCGA.AG.A015.01A	1	153701060	249148086	6879	0.4424	SMALL-GAIN	NONFOCAL	765	Too-Many
TCGA.AA.3509.01A	1	154209483	155317447	340	0.425	SMALL-GAIN	NONFOCAL	42	"ADAM15,ADAR,AQP10,ASH1L,ATP8B2,CHRNB2,CKS1B,CLK2,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,FLAD1,GBA,HAX1,HCN3,IL6R,KCNN3,KRTCAP2,LENEP,MTX1,MUC1,PBXIP1,PKLR,PMVK,PYGO2,RUSC1,RUSC1-AS1,SCAMP3,SHC1,SHE,SLC50A1,TDRD10,THBS3,TRIM46,UBAP2L,UBE2Q1,ZBTB7B"
TCGA.AA.3939.01A	1	154987090	156926195	643	0.3907	SMALL-GAIN	NONFOCAL	73	"ADAM15,APOA1BP,ARHGEF11,ARHGEF2,ASH1L,BCAN,BGLAP,C1orf61,CCT3,CLK2,CRABP2,DAP3,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,GBA,GLMP,GON4L,GPATCH4,HAPLN2,HCN3,HDGF,INSRR,IQGAP3,ISG20L2,KIAA0907,KRTCAP2,LAMTOR2,LMNA,LRRC71,MEF2D,MEX3A,MRPL24,MSTO1,MTX1,MUC1,NES,NTRK1,PAQR6,PEAR1,PKLR,PMF1,PMF1-BGLAP,PRCC,RAB25,RHBG,RIT1,RRNAD1,RUSC1,RUSC1-AS1,RXFP4,SCAMP3,SEMA4A,SH2D2A,SLC25A44,SLC50A1,SMG5,SSR2,SYT11,THBS3,TMEM79,TRIM46,TSACC,TTC24,UBQLN4,VHLL,YY1AP1,ZBTB7B"
TCGA.AA.A01F.01A	1	155158549	211307147	4042	0.4276	SMALL-GAIN	NONFOCAL	478	Too-Many
TCGA.AA.3862.01A	1	155230070	161475708	1171	0.5703	SMALL-GAIN	NONFOCAL	153	Too-Many
TCGA.AA.3509.01A	1	155707893	158326246	553	0.4408	SMALL-GAIN	NONFOCAL	61	"APOA1BP,ARHGEF11,ARHGEF2,BCAN,BGLAP,C1orf61,CCT3,CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,CRABP2,DAP3,ETV3,ETV3L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,GLMP,GON4L,GPATCH4,HAPLN2,HDGF,INSRR,IQGAP3,ISG20L2,KIAA0907,KIRREL,LAMTOR2,LMNA,LRRC71,MEF2D,MEX3A,MRPL24,NES,NTRK1,PAQR6,PEAR1,PMF1,PMF1-BGLAP,PRCC,RAB25,RHBG,RIT1,RRNAD1,RXFP4,SEMA4A,SH2D2A,SLC25A44,SMG5,SSR2,SYT11,TMEM79,TSACC,TTC24,UBQLN4,VHLL"
TCGA.AG.A01W.01A	1	156634942	156884877	37	0.619	SMALL-GAIN	NONFOCAL	11	"CRABP2,HDGF,INSRR,ISG20L2,MRPL24,NES,NTRK1,PEAR1,PRCC,RRNAD1,SH2D2A"
TCGA.AA.A02E.01A	1	156921316	159825631	267	0.4235	SMALL-GAIN	NONFOCAL	46	"ACKR1,AIM2,APCS,ARHGEF11,C1orf204,CADM3,CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,CRP,DUSP23,ETV3,ETV3L,FCER1A,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,FCRL6,IFI16,KIRREL,MNDA,OR10J1,OR10J3,OR10J5,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SLAMF8,SPTA1,VSIG8"
TCGA.AA.3861.01A	1	157489446	158595874	127	0.6515	SMALL-GAIN	NONFOCAL	21	"CD1A,CD1B,CD1C,CD1D,CD1E,CD5L,FCRL1,FCRL2,FCRL3,FCRL4,FCRL5,KIRREL,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6P1,OR6Y1,SPTA1"
TCGA.AZ.4684.01A	1	158326541	159024550	90	0.6175	SMALL-GAIN	NONFOCAL	18	"CD1E,IFI16,MNDA,OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6K3,OR6K6,OR6N1,OR6N2,OR6P1,OR6Y1,PYHIN1,SPTA1"
TCGA.AA.3509.01A	1	159035698	163187264	583	0.4978	SMALL-GAIN	NONFOCAL	86	"ACKR1,ADAMTS4,AIM2,APCS,APOA2,ARHGAP30,ATF6,ATP1A2,ATP1A4,B4GALT3,C1orf110,C1orf111,C1orf204,C1orf226,CADM3,CASQ1,CD244,CD48,CD84,CFAP126,CFAP45,COPA,CRP,DCAF8,DDR2,DEDD,DUSP12,DUSP23,F11R,FCER1A,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRL6,FCRLA,FCRLB,HSD17B7,HSPA6,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NOS1AP,NR1I3,OLFML2B,OR10J1,OR10J3,OR10J5,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,RGS4,RGS5,SDHC,SH2D1B,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,TAGLN2,TOMM40L,TSTD1,UAP1,UFC1,UHMK1,USF1,USP21,VANGL2,VSIG8"
TCGA.AA.A01R	1	159320978	249198691	31184	0.3821	SMALL-GAIN	NONFOCAL	624	Too-Many
TCGA.AG.A00Y.01A	1	159779864	162352934	465	0.6028	SMALL-GAIN	NONFOCAL	68	"ADAMTS4,APOA2,ARHGAP30,ATF6,ATP1A2,ATP1A4,B4GALT3,C1orf111,C1orf204,C1orf226,CASQ1,CD244,CD48,CD84,CFAP126,CFAP45,COPA,DCAF8,DEDD,DUSP12,F11R,FCER1G,FCGR2A,FCGR2B,FCGR2C,FCGR3A,FCGR3B,FCRL6,FCRLA,FCRLB,HSPA6,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NOS1AP,NR1I3,OLFML2B,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,SDHC,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,TAGLN2,TOMM40L,TSTD1,UFC1,USF1,USP21,VANGL2,VSIG8"
TCGA.A6.3808.01A	1	159802635	161475708	392	0.4511	SMALL-GAIN	NONFOCAL	54	"ADAMTS4,APOA2,ARHGAP30,ATP1A2,ATP1A4,B4GALT3,C1orf204,CASQ1,CD244,CD48,CD84,CFAP126,CFAP45,COPA,DCAF8,DEDD,F11R,FCER1G,FCGR2A,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NR1I3,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,SDHC,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,TAGLN2,TOMM40L,TSTD1,UFC1,USF1,USP21,VANGL2,VSIG8"
TCGA.NH.A6GA	1	161282858	210598836	16551	0.4497	SMALL-GAIN	NONFOCAL	322	Too-Many
TCGA.AA.3862.01A	1	161644985	162766340	100	0.5006	SMALL-GAIN	NONFOCAL	14	"ATF6,C1orf111,C1orf226,DDR2,DUSP12,FCGR2B,FCRLA,FCRLB,HSD17B7,NOS1AP,OLFML2B,SH2D1B,UAP1,UHMK1"
TCGA.A6.3808.01A	1	161644985	179322657	1102	0.3806	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.F5.6863	1	162417106	196835105	11363	0.3893	SMALL-GAIN	NONFOCAL	166	Too-Many
TCGA.AA.3862.01A	1	162822786	214625116	3527	0.3942	SMALL-GAIN	NONFOCAL	326	Too-Many
TCGA.AA.3509.01A	1	164529059	166973370	92	0.466	SMALL-GAIN	NONFOCAL	13	"ALDH9A1,FAM78B,ILDR2,LMX1A,LRRC52,MAEL,MGST3,PBX1,POGK,RXRG,TADA1,TMCO1,UCK2"
TCGA.AA.A010.01A	1	166990272	167973733	102	0.4996	SMALL-GAIN	NONFOCAL	11	"ADCY10,CD247,CREG1,DCAF6,DUSP27,GPA33,MAEL,MPC2,MPZL1,POU2F1,RCSD1"
TCGA.AG.A01W.01A	1	168114390	170793371	179	0.4582	SMALL-GAIN	NONFOCAL	22	"ATP1B1,BLZF1,C1orf112,CCDC181,DPT,F5,GORAB,KIFAP3,METTL11B,METTL18,NME7,PRRX1,SCYL3,SELE,SELL,SELP,SFT2D2,SLC19A2,TBX19,TIPRL,XCL1,XCL2"
TCGA.AG.A01N.01A	1	168344712	180910142	843	0.4129	SMALL-GAIN	NONFOCAL	77	"ABL2,ACBD6,ANGPTL1,ANKRD45,ASTN1,ATP1B1,AXDND1,BLZF1,BRINP2,C1orf105,C1orf112,CACYBP,CCDC181,CENPL,CEP350,DARS2,DNM3,DPT,F5,FAM163A,FAM20B,FASLG,FMO1,FMO2,FMO3,FMO4,GORAB,GPR52,KIAA0040,KIAA1614,KIFAP3,KLHL20,LHX4,LOC730159,METTL11B,METTL13,METTL18,MROH9,MRPS14,MYOC,NME7,NPHS2,PAPPA2,PIGC,PRDX6,PRRC2C,PRRX1,QSOX1,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,SCYL3,SEC16B,SELE,SELL,SELP,SERPINC1,SLC19A2,SLC9C2,SOAT1,SUCO,TDRD5,TEX35,TNFSF18,TNFSF4,TNN,TNR,TOR1AIP1,TOR1AIP2,TOR3A,VAMP4,XCL1,XCL2,XPR1,ZBTB37"
TCGA.AZ.4684.01A	1	169138637	169985566	134	0.6569	SMALL-GAIN	NONFOCAL	12	"BLZF1,C1orf112,CCDC181,F5,KIFAP3,METTL18,NME7,SCYL3,SELE,SELL,SELP,SLC19A2"
TCGA.AZ.4684.01A	1	170004553	172502280	167	0.4236	SMALL-GAIN	NONFOCAL	17	"C1orf105,DNM3,FMO1,FMO2,FMO3,FMO4,GORAB,KIFAP3,METTL11B,METTL13,MROH9,MYOC,PIGC,PRRC2C,PRRX1,SUCO,VAMP4"
TCGA.AA.3509.01A	1	173470163	178745839	306	0.5631	SMALL-GAIN	NONFOCAL	24	"ANKRD45,ASTN1,BRINP2,CACYBP,CENPL,DARS2,GPR52,KIAA0040,KLHL20,LOC730159,MRPS14,PAPPA2,RABGAP1L,RALGPS2,RASAL2,RC3H1,RFWD2,SEC16B,SERPINC1,SLC9C2,TEX35,TNN,TNR,ZBTB37"
TCGA.AG.3612	1	176541401	180089857	1087	0.5538	SMALL-GAIN	NONFOCAL	19	"ABL2,ANGPTL1,ASTN1,AXDND1,BRINP2,CEP350,FAM163A,FAM20B,NPHS2,PAPPA2,RALGPS2,RASAL2,SEC16B,SOAT1,TDRD5,TEX35,TOR1AIP1,TOR1AIP2,TOR3A"
TCGA.AG.A01W.01A	1	178466225	179719454	76	0.3871	SMALL-GAIN	NONFOCAL	11	"ABL2,ANGPTL1,AXDND1,FAM163A,FAM20B,NPHS2,RALGPS2,SOAT1,TDRD5,TEX35,TOR3A"
TCGA.AA.3509.01A	1	178847984	185259764	580	0.491	SMALL-GAIN	NONFOCAL	47	"ABL2,ACBD6,APOBEC4,ARPC5,AXDND1,C1orf21,CACNA1E,CEP350,COLGALT2,DHX9,EDEM3,FAM129A,FAM163A,FAM20B,GLUL,IER5,KIAA1614,LAMC1,LAMC2,LHX4,MR1,NCF2,NMNAT2,NPHS2,NPL,QSOX1,RALGPS2,RGL1,RGS16,RGS8,RGSL1,RNASEL,RNF2,SHCBP1L,SMG7,SOAT1,STX6,SWT1,TDRD5,TEDDM1,TOR1AIP1,TOR1AIP2,TOR3A,TRMT1L,TSEN15,XPR1,ZNF648"
TCGA.AG.3611.01A	1	179354325	184006222	355	0.3963	SMALL-GAIN	NONFOCAL	35	"ACBD6,APOBEC4,ARPC5,AXDND1,CACNA1E,CEP350,COLGALT2,DHX9,FAM163A,GLUL,IER5,KIAA1614,LAMC1,LAMC2,LHX4,MR1,NCF2,NMNAT2,NPHS2,NPL,QSOX1,RGL1,RGS16,RGS8,RGSL1,RNASEL,SHCBP1L,SMG7,STX6,TDRD5,TEDDM1,TOR1AIP1,TOR1AIP2,XPR1,ZNF648"
TCGA.AA.A00N.01A	1	179599860	180962441	124	0.4446	SMALL-GAIN	NONFOCAL	11	"ACBD6,CEP350,FAM163A,KIAA1614,LHX4,QSOX1,STX6,TDRD5,TOR1AIP1,TOR1AIP2,XPR1"
TCGA.AY.6196	1	182984523	185899453	914	0.4114	SMALL-GAIN	NONFOCAL	18	"APOBEC4,ARPC5,C1orf21,COLGALT2,EDEM3,FAM129A,HMCN1,IVNS1ABP,LAMC1,LAMC2,NCF2,NMNAT2,RGL1,RNF2,SMG7,SWT1,TRMT1L,TSEN15"
TCGA.AG.A01N.01A	1	183604600	186158662	223	0.6309	SMALL-GAIN	NONFOCAL	13	"APOBEC4,ARPC5,C1orf21,COLGALT2,EDEM3,FAM129A,HMCN1,IVNS1ABP,RGL1,RNF2,SWT1,TRMT1L,TSEN15"
TCGA.AG.A01W.01A	1	184575361	196958143	357	0.4751	SMALL-GAIN	NONFOCAL	33	"B3GALT2,BRINP3,C1orf21,C1orf27,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,EDEM3,FAM129A,GLRX2,HMCN1,IVNS1ABP,KCNT2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,RGS1,RGS13,RGS18,RGS2,RGS21,RNF2,SWT1,TPR,TRMT1L,TROVE2,UCHL5"
TCGA.A6.3808.01A	1	186281260	196748300	211	0.4508	SMALL-GAIN	NONFOCAL	21	"B3GALT2,BRINP3,C1orf27,CDC73,CFH,CFHR3,GLRX2,KCNT2,OCLM,PDC,PLA2G4A,PRG4,PTGS2,RGS1,RGS13,RGS18,RGS2,RGS21,TPR,TROVE2,UCHL5"
TCGA.AZ.4684.01A	1	186336970	193205334	114	0.5752	SMALL-GAIN	NONFOCAL	17	"B3GALT2,BRINP3,C1orf27,CDC73,GLRX2,OCLM,PDC,PLA2G4A,PTGS2,RGS1,RGS13,RGS18,RGS2,RGS21,TPR,TROVE2,UCHL5"
TCGA.DM.A28M.01A	1	186336970	198698185	330	0.5081	SMALL-GAIN	NONFOCAL	34	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,KCNT2,LHX9,NEK7,OCLM,PDC,PLA2G4A,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TPR,TROVE2,UCHL5,ZBTB41"
TCGA.AG.A01N.01A	1	186355081	198827964	329	0.5117	SMALL-GAIN	NONFOCAL	33	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,KCNT2,LHX9,NEK7,OCLM,PDC,PLA2G4A,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5,ZBTB41"
TCGA.F4.6459	1	189041758	193150218	1123	0.4822	SMALL-GAIN	NONFOCAL	11	"B3GALT2,BRINP3,CDC73,GLRX2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.AZ.4682	1	189526598	249198691	20749	0.4393	SMALL-GAIN	NONFOCAL	399	Too-Many
TCGA.F4.6459	1	193239403	211602458	6150	0.6173	SMALL-GAIN	NONFOCAL	146	Too-Many
TCGA.F5.6863	1	196916358	233424787	12799	0.39	SMALL-GAIN	NONFOCAL	274	Too-Many
TCGA.A6.3808.01A	1	196918564	200342145	164	0.6076	SMALL-GAIN	NONFOCAL	13	"ASPM,ATP6V1G3,C1orf53,CFHR2,CFHR5,CRB1,DENND1B,F13B,LHX9,NEK7,NR5A2,PTPRC,ZBTB41"
TCGA.AG.3611.01A	1	197446594	200973421	162	0.4067	SMALL-GAIN	NONFOCAL	15	"ATP6V1G3,C1orf106,C1orf53,CAMSAP2,CRB1,DDX59,DENND1B,GPR25,KIF14,KIF21B,LHX9,NEK7,NR5A2,PTPRC,ZNF281"
TCGA.AA.3509.01A	1	199996907	215759801	1531	0.4665	SMALL-GAIN	NONFOCAL	154	Too-Many
TCGA.AG.A00Y.01A	1	200008739	201970463	282	0.4217	SMALL-GAIN	NONFOCAL	24	"ASCL5,C1orf106,CACNA1S,CAMSAP2,CSRP1,DDX59,GPR25,IGFN1,IPO9,KIF14,KIF21B,LAD1,LMOD1,NAV1,NR5A2,PHLDA3,PKP1,RNPEP,SHISA4,TIMM17A,TMEM9,TNNI1,TNNT2,ZNF281"
TCGA.AA.3941	1	200146402	207190947	2380	0.4792	SMALL-GAIN	NONFOCAL	102	Too-Many
TCGA.AG.3611.01A	1	201012412	202936230	313	0.3837	SMALL-GAIN	NONFOCAL	29	"ADIPOR1,ARL8A,ASCL5,CACNA1S,CSRP1,CYB5R1,ELF3,GPR37L1,IGFN1,IPO9,KDM5B,KLHL12,LAD1,LGR6,LMOD1,NAV1,PHLDA3,PKP1,PPP1R12B,PTPN7,RABIF,RNPEP,SHISA4,SYT2,TIMM17A,TMEM9,TNNI1,TNNT2,UBE2T"
TCGA.AG.A00Y.01A	1	201974634	214830318	1135	0.4428	SMALL-GAIN	NONFOCAL	129	Too-Many
TCGA.AG.3611.01A	1	202991963	206902025	424	0.4205	SMALL-GAIN	NONFOCAL	58	"ADORA1,ATP2B4,AVPR1B,BTG2,C1orf186,CDK18,CHI3L1,CHIT1,CNTN2,CTSE,DSTYK,DYRK3,EIF2D,ELK4,ETNK2,FAM72A,FAM72C,FMOD,GOLT1A,IKBKE,KISS1,KLHDC8A,LAX1,LEMD1,LRRN2,MAPKAPK2,MDM4,MFSD4,MYBPH,MYOG,NFASC,NUAK2,NUCKS1,OPTC,PIK3C2B,PLEKHA6,PM20D1,PPFIA4,PPP1R15B,PRELP,RAB29,RASSF5,RBBP5,REN,SLC26A9,SLC41A1,SLC45A3,SNRPE,SOX13,SRGAP2,SRGAP2B,SRGAP2C,TMCC2,TMEM183A,TMEM183B,TMEM81,ZBED6,ZC3H11A"
TCGA.AZ.6606	1	204369874	249198691	16192	0.6495	SMALL-GAIN	NONFOCAL	311	Too-Many
TCGA.AA.A010.01A	1	205719002	207273096	208	0.3985	SMALL-GAIN	NONFOCAL	29	"AVPR1B,C1orf116,C1orf186,C4BPB,CTSE,DYRK3,EIF2D,FAM72A,FAM72C,FCAMR,FCMR,IKBKE,IL10,IL19,IL20,IL24,MAPKAPK2,NUCKS1,PFKFB2,PIGR,PM20D1,RAB29,RASSF5,SLC26A9,SLC41A1,SRGAP2,SRGAP2B,SRGAP2C,YOD1"
TCGA.AA.3664	1	207425012	239891510	12206	0.3902	SMALL-GAIN	NONFOCAL	181	Too-Many
TCGA.AG.3727	1	209805179	249198691	14293	0.4416	SMALL-GAIN	NONFOCAL	255	Too-Many
TCGA.NH.A6GA	1	210620210	249198691	13954	0.4505	SMALL-GAIN	NONFOCAL	246	Too-Many
TCGA.DY.A1H8	1	210721873	215007028	1530	0.4962	SMALL-GAIN	NONFOCAL	27	"ANGEL2,ATF3,BATF3,CENPF,DTL,FAM71A,FLVCR1,HHAT,INTS7,KCNH1,LPGAT1,NEK2,NENF,NSL1,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SLC30A1,SMYD2,SPATA45,TATDN3,TMEM206,TRAF5,VASH2"
TCGA.AA.3941	1	212266530	213232554	321	0.4519	SMALL-GAIN	NONFOCAL	14	"ANGEL2,ATF3,BATF3,DTL,FAM71A,FLVCR1,NENF,NSL1,PPP2R5A,RPS6KC1,SPATA45,TATDN3,TMEM206,VASH2"
TCGA.AA.3561	1	214103770	249198691	12764	0.6626	SMALL-GAIN	NONFOCAL	223	Too-Many
TCGA.AA.3862.01A	1	216243411	228403297	751	0.4161	SMALL-GAIN	NONFOCAL	70	"ACBD3,ADCK3,AIDA,ARF1,BPNT1,BROX,C1orf115,C1orf35,C1orf95,CAPN2,CAPN8,CCDC185,CDC42BPA,CNIH3,CNIH4,DEGS1,DISP1,DNAH14,DUSP10,ENAH,EPHX1,EPRS,ESRRG,FAM177B,FBXO28,GJC2,GPATCH2,GUK1,H3F3A,HHIPL2,HLX,IARS2,IBA57,ITPKB,JMJD4,LBR,LEFTY1,LEFTY2,LIN9,LYPLAL1,MARC1,MARC2,MARK1,MIA3,MIXL1,MRPL55,NVL,OBSCN,PARP1,PRSS38,PSEN2,PYCR2,RAB3GAP2,RRP15,SDE2,SLC30A10,SNAP47,SPATA17,SRP9,SUSD4,TAF1A,TGFB2,TLR5,TMEM63A,TP53BP2,USH2A,WDR26,WNT3A,WNT9A,ZNF678"
TCGA.AG.3611.01A	1	216496777	224415259	280	0.3793	SMALL-GAIN	NONFOCAL	34	"AIDA,BPNT1,BROX,C1orf115,CAPN2,CAPN8,CCDC185,DEGS1,DISP1,DUSP10,EPRS,ESRRG,FAM177B,FBXO28,GPATCH2,HHIPL2,HLX,IARS2,LYPLAL1,MARC1,MARC2,MARK1,MIA3,NVL,RAB3GAP2,RRP15,SLC30A10,SPATA17,SUSD4,TAF1A,TGFB2,TLR5,TP53BP2,USH2A"
TCGA.DY.A1H8	1	216753600	224260823	2669	0.447	SMALL-GAIN	NONFOCAL	30	"AIDA,BPNT1,BROX,C1orf115,CAPN2,CAPN8,CCDC185,DISP1,DUSP10,EPRS,ESRRG,FAM177B,GPATCH2,HHIPL2,HLX,IARS2,LYPLAL1,MARC1,MARC2,MARK1,MIA3,RAB3GAP2,RRP15,SLC30A10,SPATA17,SUSD4,TAF1A,TGFB2,TLR5,TP53BP2"
TCGA.AG.A01W.01A	1	225259292	226622150	147	0.4906	SMALL-GAIN	NONFOCAL	15	"ACBD3,DNAH14,ENAH,EPHX1,H3F3A,LBR,LEFTY1,LEFTY2,LIN9,MIXL1,PARP1,PYCR2,SDE2,SRP9,TMEM63A"
TCGA.AA.3509.01A	1	225609779	226342316	74	0.4755	SMALL-GAIN	NONFOCAL	11	"ACBD3,ENAH,EPHX1,H3F3A,LBR,LEFTY1,LEFTY2,PYCR2,SDE2,SRP9,TMEM63A"
TCGA.AA.3870	1	227078720	236736563	3699	0.4256	SMALL-GAIN	NONFOCAL	74	"ABCB10,ACTA1,ADCK3,AGT,ARF1,ARID4B,ARV1,B3GALNT2,BTNL10,C1orf131,C1orf198,C1orf35,CAPN9,CCSAP,CDC42BPA,COA6,COG2,DISC1,EDARADD,EGLN1,ERO1LB,EXOC8,FAM89A,GALNT2,GGPS1,GJC2,GNG4,GNPAT,GPR137B,GUK1,HEATR1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,IRF2BP2,JMJD4,KCNK1,KIAA1804,LGALS8,LOC149373,LYST,MAP10,MRPL55,NID1,NTPCR,NUP133,OBSCN,PCNXL2,PGBD5,PRSS38,PSEN2,RAB4A,RBM34,RHOU,RNF187,SIPA1L2,SLC35F3,SNAP47,SPHAR,SPRTN,TAF5L,TARBP1,TBCE,TOMM20,TRIM11,TRIM17,TRIM67,TSNAX,TTC13,URB2,WNT3A,WNT9A,ZNF678"
TCGA.A6.2671	1	228183661	228651010	94	0.4924	SMALL-GAIN	NONFOCAL	13	"ARF1,C1orf35,GJC2,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,MRPL55,OBSCN,TRIM11,TRIM17,WNT3A"
TCGA.AA.A010.01A	1	231175630	233344217	124	0.5807	SMALL-GAIN	NONFOCAL	14	"C1orf131,DISC1,EGLN1,EXOC8,FAM89A,GNPAT,LOC149373,MAP10,NTPCR,PCNXL2,SIPA1L2,SPRTN,TRIM67,TSNAX"
TCGA.F5.6863	1	233622419	249198691	5744	0.3812	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AG.A01W.01A	1	234802288	240080314	288	0.3793	SMALL-GAIN	NONFOCAL	20	"ACTN2,ARID4B,B3GALNT2,CHRM3,EDARADD,ERO1LB,GGPS1,GNG4,GPR137B,HEATR1,LGALS8,LYST,MT1HL1,MTR,NID1,RBM34,RYR2,TBCE,TOMM20,ZP4"
TCGA.AA.3862.01A	1	235311641	236925711	232	0.461	SMALL-GAIN	NONFOCAL	14	"ACTN2,ARID4B,B3GALNT2,EDARADD,ERO1LB,GGPS1,GNG4,GPR137B,HEATR1,LGALS8,LYST,NID1,RBM34,TBCE"
TCGA.AG.3611.01A	1	235384843	247835423	580	0.3948	SMALL-GAIN	NONFOCAL	62	"ACTN2,ADSS,AHCTF1,AKT3,ARID4B,B3GALNT2,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GGPS1,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR13G1,OR2B11,OR2C3,OR2G2,OR2G3,OR2W5,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SMYD3,TBCE,TFB2M,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695,ZP4"
TCGA.CA.6715	1	235523554	249198691	4936	0.4893	SMALL-GAIN	NONFOCAL	99	"ACTN2,ADSS,AHCTF1,AKT3,B3GALNT2,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TBCE,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AG.A01Y	1	235574973	249198691	4943	0.4809	SMALL-GAIN	NONFOCAL	99	"ACTN2,ADSS,AHCTF1,AKT3,B3GALNT2,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TBCE,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.BM.6198	1	235789617	249198691	4897	0.41105	SMALL-GAIN	NONFOCAL	97	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EDARADD,EFCAB2,ERO1LB,EXO1,FH,FMN2,GCSAML,GNG4,GPR137B,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LGALS8,LYPD8,LYST,MAP1LC3C,MT1HL1,MTR,NID1,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.3509.01A	1	236754110	249213943	642	0.5029	SMALL-GAIN	NONFOCAL	91	"ACTN2,ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HEATR1,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,MT1HL1,MTR,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PGBD2,PLD5,RGS7,RYR2,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695,ZP4"
TCGA.AA.3664	1	240048624	249198691	3067	0.4052	SMALL-GAIN	NONFOCAL	84	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CHRM3,CNST,COX20,DESI2,EFCAB2,EXO1,FH,FMN2,GCSAML,GREM2,HNRNPU,KIF26B,KMO,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,RGS7,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AG.A02X.01A	1	241661081	245765842	188	0.5303	SMALL-GAIN	NONFOCAL	21	"ADSS,AKT3,BECN2,C1orf100,C1orf101,CEP170,CHML,COX20,DESI2,EFCAB2,EXO1,FH,HNRNPU,KIF26B,KMO,MAP1LC3C,OPN3,PLD5,SDCCAG8,WDR64,ZBTB18"
TCGA.CM.5348	1	241766550	249198691	2255	0.5453	SMALL-GAIN	NONFOCAL	78	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CHML,CNST,COX20,DESI2,EFCAB2,EXO1,GCSAML,HNRNPU,KIF26B,LYPD8,MAP1LC3C,NLRP3,OPN3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,WDR64,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3994	1	242419231	249198691	1988	0.4032	SMALL-GAIN	NONFOCAL	72	"ADSS,AHCTF1,AKT3,C1orf100,C1orf101,C1orf229,CEP170,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3870	1	245882413	249198691	915	0.3994	SMALL-GAIN	NONFOCAL	59	"AHCTF1,C1orf229,CNST,GCSAML,LYPD8,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,SCCPDH,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.AA.3850	1	246510778	247636014	318	0.43975	SMALL-GAIN	NONFOCAL	14	"AHCTF1,C1orf229,CNST,NLRP3,OR2B11,SCCPDH,SMYD3,TFB2M,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AA.3941	1	246510778	247649650	323	0.4901	SMALL-GAIN	NONFOCAL	14	"AHCTF1,C1orf229,CNST,NLRP3,OR2B11,SCCPDH,SMYD3,TFB2M,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.A6.3808.01A	1	247094394	247719641	45	0.4067	SMALL-GAIN	NONFOCAL	13	"AHCTF1,C1orf229,GCSAML,NLRP3,OR2B11,OR2C3,OR2W5,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AG.3611.01A	1	248023869	248813185	41	0.3889	SMALL-GAIN	NONFOCAL	29	"OR14C36,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,TRIM58"
TCGA.AA.A01S	2	21832	15433327	6215	0.49135	SMALL-GAIN	NONFOCAL	53	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,E2F6,FAM110C,FAM150B,FAM84A,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LOC653602,LPIN1,MBOAT2,MYT1L,NBAS,NOL10,NTSR2,ODC1,PDIA6,PQLC3,PXDN,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,YWHAQ"
TCGA.AA.3534	2	21832	23538088	9245	0.4522	SMALL-GAIN	NONFOCAL	78	"ACP1,ADAM17,ADI1,ALLC,APOB,ASAP2,ATP6V1C2,C2orf48,C2orf50,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,DDX1,E2F6,FAM110C,FAM150B,FAM49A,FAM84A,GDF7,GEN1,GREB1,GRHL1,HPCAL1,HS1BP3,IAH1,ID2,ITGB1BP1,KCNF1,KCNS3,KIDINS220,KLF11,LAPTM4A,LDAH,LOC653602,LPIN1,MATN3,MBOAT2,MSGN1,MYCN,MYT1L,NBAS,NOL10,NT5C1B,NT5C1B-RDH14,NTSR2,ODC1,OSR1,PDIA6,PQLC3,PUM2,PXDN,RAD51AP2,RDH14,RHOB,RNASEH1,RNF144A,ROCK2,RPS7,RRM2,RSAD2,SDC1,SH3YL1,SMC6,SNTG2,SOX11,TAF1B,TDRD15,TMEM18,TPO,TRAPPC12,TRIB2,TSSC1,TTC32,VSNL1,WDR35,YWHAQ"
TCGA.AA.3679	2	21832	30021681	10916	0.3958	SMALL-GAIN	NONFOCAL	163	Too-Many
TCGA.AG.3574	2	21832	40332850	14772	0.4706	SMALL-GAIN	NONFOCAL	211	Too-Many
TCGA.AA.3496	2	21832	42562139	15756	0.4026	SMALL-GAIN	NONFOCAL	215	Too-Many
TCGA.CL.5917	2	21832	55324556	20639	0.3802	SMALL-GAIN	NONFOCAL	272	Too-Many
TCGA.D5.6537	2	21832	63231533	22808	0.4319	SMALL-GAIN	NONFOCAL	299	Too-Many
TCGA.DM.A1DA	2	21832	64312141	23105	0.5256	SMALL-GAIN	NONFOCAL	304	Too-Many
TCGA.D5.6929	2	21832	88437167	30322	0.4782	SMALL-GAIN	NONFOCAL	459	Too-Many
TCGA.DC.4745	2	21832	110459504	34337	0.3985	SMALL-GAIN	NONFOCAL	566	Too-Many
TCGA.AF.5654	2	21832	114186946	35028	0.3834	SMALL-GAIN	NONFOCAL	598	Too-Many
TCGA.CA.6715	2	21832	127516505	38990	0.4898	SMALL-GAIN	NONFOCAL	629	Too-Many
TCGA.A6.6652	2	21832	243048759	72578	0.4294	SMALL-GAIN	NONFOCAL	1212	Too-Many
TCGA.AD.A5EK	2	21832	243048759	72199	0.4487	SMALL-GAIN	NONFOCAL	1212	Too-Many
TCGA.D5.5541	2	21832	243048759	72582	0.4284	SMALL-GAIN	NONFOCAL	1212	Too-Many
TCGA.QG.A5YX	2	21832	243048759	72012	0.5336	SMALL-GAIN	NONFOCAL	1212	Too-Many
TCGA.AA.3941	2	8442735	12065860	1353	0.4685	SMALL-GAIN	NONFOCAL	28	"ADAM17,ASAP2,ATP6V1C2,C2orf48,C2orf50,CPSF3,CYS1,E2F6,GREB1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,LPIN1,MBOAT2,NOL10,NTSR2,ODC1,PDIA6,PQLC3,ROCK2,RRM2,TAF1B,YWHAQ"
TCGA.AA.A01S	2	17966248	34407965	5281	0.50555	SMALL-GAIN	NONFOCAL	124	Too-Many
TCGA.AA.3534	2	23544886	121687128	28083	0.4443	SMALL-GAIN	NONFOCAL	545	Too-Many
TCGA.AA.3941	2	23984991	24443270	64	0.528	SMALL-GAIN	NONFOCAL	11	"ATAD2B,C2orf44,FAM228A,FAM228B,FKBP1B,ITSN2,MFSD2B,PFN4,SF3B6,TP53I3,UBXN2A"
TCGA.AA.3941	2	24956026	28304629	622	0.4845	SMALL-GAIN	NONFOCAL	63	"ABHD1,ADCY3,ADGRF3,AGBL5,ASXL2,ATRAID,BRE,C2orf16,C2orf70,CAD,CCDC121,CENPA,CENPO,CGREF1,CIB4,DNAJC27,DNAJC5G,DNMT3A,DPYSL5,DRC1,DTNB,EFR3B,EIF2B4,EMILIN1,EPT1,FNDC4,GAREML,GCKR,GPN1,GTF3C2,HADHA,HADHB,IFT172,KCNK3,KHK,KIF3C,KRTCAP3,MAPRE3,MPV17,MRPL33,NCOA1,NRBP1,OST4,OTOF,POMC,PPM1G,PREB,PRR30,PTRHD1,RAB10,RBKS,SLC30A3,SLC35F6,SLC4A1AP,SLC5A6,SNX17,SUPT7L,TCF23,TMEM214,TRIM54,UCN,ZNF512,ZNF513"
TCGA.AG.A00Y.01A	2	26533523	27861715	384	0.4548	SMALL-GAIN	NONFOCAL	43	"ABHD1,ADGRF3,AGBL5,ATRAID,C2orf16,C2orf70,CAD,CCDC121,CENPA,CGREF1,CIB4,DNAJC5G,DPYSL5,DRC1,EIF2B4,EMILIN1,EPT1,FNDC4,GCKR,GPN1,GTF3C2,IFT172,KCNK3,KHK,KRTCAP3,MAPRE3,MPV17,NRBP1,OST4,OTOF,PPM1G,PREB,PRR30,SLC30A3,SLC35F6,SLC5A6,SNX17,TCF23,TMEM214,TRIM54,UCN,ZNF512,ZNF513"
TCGA.AA.3861.01A	2	27324955	27591195	125	0.5422	SMALL-GAIN	NONFOCAL	15	"ABHD1,ATRAID,CAD,CGREF1,DNAJC5G,EIF2B4,GTF3C2,MPV17,PREB,PRR30,SLC30A3,SLC5A6,TCF23,TRIM54,UCN"
TCGA.AA.3941	2	28322321	29474501	396	0.4458	SMALL-GAIN	NONFOCAL	11	"ALK,BRE,C2orf71,CLIP4,FAM179A,FOSL2,PLB1,PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.AA.3679	2	30074065	78993591	16925	0.3952	SMALL-GAIN	NONFOCAL	249	Too-Many
TCGA.AG.3909.01A	2	30862931	32477451	131	0.495	SMALL-GAIN	NONFOCAL	12	"CAPN13,CAPN14,DPY30,EHD3,GALNT14,LCLAT1,MEMO1,NLRC4,SLC30A6,SPAST,SRD5A2,XDH"
TCGA.BM.6198	2	38542572	39776276	322	0.42025	SMALL-GAIN	NONFOCAL	11	"ARHGEF33,ATL2,CDKL4,DHX57,GALM,GEMIN6,HNRNPLL,MAP4K3,MORN2,SOS1,SRSF7"
TCGA.AG.3574	2	40338066	243048759	57825	0.4892	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.AA.3941	2	42073637	45608827	1367	0.3968	SMALL-GAIN	NONFOCAL	22	"ABCG5,ABCG8,C1GALT1C1L,C2orf91,CAMKMT,COX7A2L,DYNC2LI1,EML4,HAAO,KCNG3,LRPPRC,MTA3,OXER1,PKDCC,PLEKHH2,PPM1B,PREPL,SIX2,SIX3,SLC3A1,THADA,ZFP36L2"
TCGA.AA.3496	2	43870971	65009645	7143	0.3881	SMALL-GAIN	NONFOCAL	86	"ABCG5,ABCG8,ACYP2,AFTPH,AHSA2,ASB3,ATP6V1E2,B3GNT2,BCL11A,C1GALT1C1L,C2orf61,C2orf73,C2orf74,CALM2,CAMKMT,CCDC85A,CCDC88A,CCT4,CFAP36,CHAC2,CLHC1,COMMD1,CRIPT,DYNC2LI1,EFEMP1,EHBP1,EML6,EPAS1,EPCAM,ERLEC1,FAM161A,FANCL,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,KCNK12,KIAA1841,LGALSL,LHCGR,LRPPRC,MCFD2,MDH1,MSH2,MSH6,MTIF2,NRXN1,OTX1,PAPOLG,PELI1,PEX13,PIGF,PLEKHH2,PNPT1,PPM1B,PPP1R21,PREPL,PRKCE,PSME4,PUS10,REL,RHOQ,RPS27A,RTN4,SERTAD2,SIX2,SIX3,SLC3A1,SMEK2,SOCS5,SPTBN1,SRBD1,STON1,STON1-GTF2A1L,TMEM17,TMEM247,TSPYL6,TTC7A,UGP2,USP34,VPS54,VRK2,WDPCP,XPO1"
TCGA.CK.5914.01A	2	43934500	46819586	186	0.5373	SMALL-GAIN	NONFOCAL	18	"ABCG5,ABCG8,ATP6V1E2,CAMKMT,DYNC2LI1,EPAS1,LRPPRC,PIGF,PLEKHH2,PPM1B,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SRBD1,TMEM247"
TCGA.AA.A01S	2	44064783	53592192	3677	0.51335	SMALL-GAIN	NONFOCAL	35	"ABCG5,ABCG8,ATP6V1E2,C2orf61,CALM2,CAMKMT,CRIPT,EPAS1,EPCAM,FBXO11,FOXN2,FSHR,GTF2A1L,KCNK12,LHCGR,LRPPRC,MCFD2,MSH2,MSH6,NRXN1,PIGF,PPM1B,PPP1R21,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SOCS5,SRBD1,STON1,STON1-GTF2A1L,TMEM247,TTC7A"
TCGA.AA.3941	2	46454927	48869197	792	0.4297	SMALL-GAIN	NONFOCAL	21	"ATP6V1E2,C2orf61,CALM2,CRIPT,EPAS1,EPCAM,FBXO11,FOXN2,GTF2A1L,KCNK12,MCFD2,MSH2,MSH6,PIGF,PPP1R21,RHOQ,SOCS5,STON1,STON1-GTF2A1L,TMEM247,TTC7A"
TCGA.F5.6863	2	46559775	106214188	15583	0.3791	SMALL-GAIN	NONFOCAL	312	Too-Many
TCGA.AA.3693	2	49219033	88369797	12012	0.3917	SMALL-GAIN	NONFOCAL	200	Too-Many
TCGA.AA.A01S	2	53594690	62201476	2777	0.50925	SMALL-GAIN	NONFOCAL	36	"ACYP2,AHSA2,ASB3,BCL11A,C2orf73,C2orf74,CCDC85A,CCDC88A,CCT4,CFAP36,CHAC2,CLHC1,COMMD1,EFEMP1,EML6,ERLEC1,FAM161A,FANCL,GPR75,GPR75-ASB3,KIAA1841,MTIF2,PAPOLG,PEX13,PNPT1,PSME4,PUS10,REL,RPS27A,RTN4,SMEK2,SPTBN1,TSPYL6,USP34,VRK2,XPO1"
TCGA.CL.5917	2	55340811	224174891	45728	0.3804	SMALL-GAIN	NONFOCAL	796	Too-Many
TCGA.D5.6537	2	63397973	67152354	1175	0.4309	SMALL-GAIN	NONFOCAL	14	"ACTR2,AFTPH,CEP68,LGALSL,MDH1,MEIS1,PELI1,RAB1A,SERTAD2,SLC1A4,SPRED2,UGP2,VPS54,WDPCP"
TCGA.DM.A1DA	2	64928526	76248072	3731	0.5507	SMALL-GAIN	NONFOCAL	102	Too-Many
TCGA.AA.3496	2	65026935	243048759	49034	0.3937	SMALL-GAIN	NONFOCAL	904	Too-Many
TCGA.D5.6537	2	67175629	114186946	10887	0.4274	SMALL-GAIN	NONFOCAL	284	Too-Many
TCGA.AG.3909.01A	2	73518933	74320639	76	0.3876	SMALL-GAIN	NONFOCAL	11	"ACTG2,ALMS1,C2orf78,DGUOK,DUSP11,EGR4,NAT8,NAT8B,STAMBP,TET3,TPRKB"
TCGA.AG.A00C.01A	2	74593370	74889815	103	0.3897	SMALL-GAIN	NONFOCAL	20	"AUP1,C2orf81,CCDC142,DCTN1,DOK1,DQX1,HTRA2,INO80B,LBX2,LOXL3,M1AP,MOGS,MRPL53,PCGF1,RTKN,SEMA4F,TLX2,TTC31,WBP1,WDR54"
TCGA.AA.3967.01A	2	74652513	74759707	61	0.4082	SMALL-GAIN	NONFOCAL	15	"AUP1,CCDC142,DQX1,HTRA2,INO80B,LBX2,LOXL3,MOGS,MRPL53,PCGF1,RTKN,TLX2,TTC31,WBP1,WDR54"
TCGA.CK.5914.01A	2	79878636	85589260	149	0.5574	SMALL-GAIN	NONFOCAL	11	"CTNNA2,DNAH6,ELMOD3,KCMF1,LRRTM1,RETSAT,SUCLG1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AA.A00N.01A	2	80620276	85628650	156	0.4897	SMALL-GAIN	NONFOCAL	11	"CAPG,CTNNA2,DNAH6,ELMOD3,KCMF1,RETSAT,SUCLG1,TCF7L1,TGOLN2,TMSB10,TRABD2A"
TCGA.AA.3941	2	85029625	86055945	276	0.5499	SMALL-GAIN	NONFOCAL	21	"ATOH8,C2orf68,CAPG,DNAH6,ELMOD3,GGCX,GNLY,KCMF1,MAT2A,RETSAT,RNF181,SFTPB,SH2D6,TCF7L1,TGOLN2,TMEM150A,TMSB10,TRABD2A,USP39,VAMP5,VAMP8"
TCGA.AA.3850	2	85569378	86055945	130	0.45935	SMALL-GAIN	NONFOCAL	15	"ATOH8,C2orf68,CAPG,ELMOD3,GGCX,GNLY,MAT2A,RETSAT,RNF181,SFTPB,SH2D6,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AA.3941	2	86074387	88847402	429	0.3934	SMALL-GAIN	NONFOCAL	23	"CD8A,CD8B,CHMP3,FABP1,FOXI3,IMMT,KDM3A,KRCC1,MRPL35,PLGLB1,PLGLB2,POLR1A,PTCD3,REEP1,RGPD1,RGPD2,RMND5A,RNF103,RNF103-CHMP3,SMYD1,ST3GAL5,TEX37,THNSL2"
TCGA.AA.A01S	2	89015163	225084763	36366	0.50585	SMALL-GAIN	NONFOCAL	610	Too-Many
TCGA.AA.3696	2	92275026	243048759	42089	0.4399	SMALL-GAIN	NONFOCAL	748	Too-Many
TCGA.G4.6626	2	95341387	99384023	392	0.4879	SMALL-GAIN	NONFOCAL	44	"ACTR1B,ADRA2B,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,CIAO1,CNGA3,CNNM3,CNNM4,COA5,COX5B,DUSP2,FAHD2A,FAHD2B,FAM178B,FER1L5,GPAT2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,LMAN2L,MAL,MGAT4A,MRPS5,NCAPH,NEURL3,PROM2,SEMA4C,SNRNP200,STARD7,TEKT4,TMEM127,TMEM131,TRIM43,TRIM43B,UNC50,VWA3B,ZAP70,ZNF2,ZNF514"
TCGA.AA.3861.01A	2	96789549	97302619	106	0.4523	SMALL-GAIN	NONFOCAL	11	"ARID5A,ASTL,CIAO1,DUSP2,ITPRIPL1,KANSL3,NCAPH,NEURL3,SNRNP200,STARD7,TMEM127"
TCGA.AA.3862.01A	2	96789549	97779440	211	0.3811	SMALL-GAIN	NONFOCAL	21	"ANKRD23,ANKRD36,ANKRD39,ARID5A,ASTL,CIAO1,CNNM3,CNNM4,DUSP2,FAHD2B,FAM178B,FER1L5,ITPRIPL1,KANSL3,LMAN2L,NCAPH,NEURL3,SEMA4C,SNRNP200,STARD7,TMEM127"
TCGA.AA.3975	2	96798304	99689140	389	0.4808	SMALL-GAIN	NONFOCAL	34	"ACTR1B,ANKRD23,ANKRD36,ANKRD36B,ANKRD39,ARID5A,ASTL,CIAO1,CNGA3,CNNM3,CNNM4,COA5,COX5B,DUSP2,FAHD2B,FAM178B,FER1L5,INPP4A,ITPRIPL1,KANSL3,KIAA1211L,LMAN2L,MGAT4A,NCAPH,NEURL3,SEMA4C,SNRNP200,STARD7,TMEM127,TMEM131,TSGA10,UNC50,VWA3B,ZAP70"
TCGA.DM.A288	2	99204427	100454084	258	0.4603	SMALL-GAIN	NONFOCAL	16	"AFF3,C2orf15,COA5,EIF5B,INPP4A,KIAA1211L,LIPT1,LYG1,LYG2,MGAT4A,MITD1,MRPL30,REV1,TSGA10,TXNDC9,UNC50"
TCGA.AA.A010.01A	2	99485481	100181927	99	0.444	SMALL-GAIN	NONFOCAL	12	"AFF3,C2orf15,EIF5B,KIAA1211L,LIPT1,LYG1,LYG2,MITD1,MRPL30,REV1,TSGA10,TXNDC9"
TCGA.G4.6626	2	99929027	101819058	649	0.4776	SMALL-GAIN	NONFOCAL	11	"AFF3,CHST10,EIF5B,LONRF2,NMS,NPAS2,PDCL3,REV1,RPL31,TBC1D8,TXNDC9"
TCGA.AA.3693	2	101100230	130970052	8861	0.3925	SMALL-GAIN	NONFOCAL	128	Too-Many
TCGA.D5.6537	2	114325088	243048759	37155	0.4448	SMALL-GAIN	NONFOCAL	612	Too-Many
TCGA.CK.5914.01A	2	120281670	122135026	105	0.4291	SMALL-GAIN	NONFOCAL	11	"CFAP221,CLASP1,EPB41L5,GLI2,INHBB,PTPN4,RALB,SCTR,TFCP2L1,TMEM177,TMEM185B"
TCGA.AA.3534	2	121732034	243048759	35197	0.4474	SMALL-GAIN	NONFOCAL	590	Too-Many
TCGA.AA.3941	2	127392973	129613488	664	0.457	SMALL-GAIN	NONFOCAL	17	"AMMECR1L,BIN1,CYP27C1,ERCC3,GPR17,GYPC,HS6ST1,IWS1,LIMS2,MAP3K2,MYO7B,POLR2D,PROC,SAP130,SFT2D3,UGGT1,WDR33"
TCGA.AG.A01W.01A	2	130814905	131501952	26	0.4632	SMALL-GAIN	NONFOCAL	13	"CCDC115,CCDC74B,CFC1,CFC1B,GPR148,IMP4,MZT2B,POTEF,POTEI,POTEJ,PTPN18,SMPD4,TUBA3E"
TCGA.DM.A288	2	131605944	232835710	28882	0.4116	SMALL-GAIN	NONFOCAL	455	Too-Many
TCGA.A6.3808.01A	2	133014513	135966391	105	0.5039	SMALL-GAIN	NONFOCAL	11	"ACMSD,CCNT2,GPR39,LYPD1,MAP3K19,MGAT5,NCKAP5,RAB3GAP1,TMEM163,ZNF806,ZRANB3"
TCGA.AG.A01W.01A	2	133147244	148422099	397	0.4314	SMALL-GAIN	NONFOCAL	25	"ACMSD,ARHGAP15,CCNT2,CXCR4,DARS,GPR39,GTDC1,HNMT,KYNU,LCT,LRP1B,LYPD1,MAP3K19,MCM6,MGAT5,NCKAP5,NXPH2,R3HDM1,RAB3GAP1,SPOPL,THSD7B,TMEM163,UBXN4,ZEB2,ZRANB3"
TCGA.CA.6715	2	136151773	243048759	30816	0.492	SMALL-GAIN	NONFOCAL	532	Too-Many
TCGA.AA.A01C.01A	2	137748385	149243289	205	0.3869	SMALL-GAIN	NONFOCAL	12	"ACVR2A,ARHGAP15,GTDC1,HNMT,KYNU,LRP1B,MBD5,NXPH2,ORC4,SPOPL,THSD7B,ZEB2"
TCGA.CK.5914.01A	2	141945943	150327187	145	0.5702	SMALL-GAIN	NONFOCAL	12	"ACVR2A,ARHGAP15,EPC2,GTDC1,KIF5C,KYNU,LRP1B,LYPD6,LYPD6B,MBD5,ORC4,ZEB2"
TCGA.AG.3896	2	142504501	209452511	17986	0.4115	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.AG.A01W.01A	2	153245940	159207228	115	0.5677	SMALL-GAIN	NONFOCAL	16	"ACVR1,ACVR1C,ARL6IP6,CCDC148,CYTIP,ERMN,FMNL2,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NR4A2,PRPF40A,RPRM,UPP2"
TCGA.AA.A00N.01A	2	157332569	160116236	136	0.6475	SMALL-GAIN	NONFOCAL	12	"ACVR1,ACVR1C,CCDC148,CYTIP,DAPL1,ERMN,GALNT5,GPD2,PKP4,TANC1,UPP2,WDSUB1"
TCGA.A6.5656	2	159929585	243048759	24265	0.451	SMALL-GAIN	NONFOCAL	481	Too-Many
TCGA.AG.A01W.01A	2	162638108	169500938	358	0.4746	SMALL-GAIN	NONFOCAL	23	"B3GALT1,CERS6,COBLL1,CSRNP3,DPP4,FAP,FIGN,GALNT3,GCA,GCG,GRB14,IFIH1,KCNH7,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,STK39,TTC21B,XIRP2"
TCGA.CK.5914.01A	2	163128716	170218769	431	0.6581	SMALL-GAIN	NONFOCAL	25	"ABCB11,B3GALT1,CERS6,COBLL1,CSRNP3,DHRS9,FIGN,G6PC2,GALNT3,GCA,GRB14,IFIH1,KCNH7,LRP2,NOSTRIN,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SPC25,STK39,TTC21B,XIRP2"
TCGA.AA.3861.01A	2	165693867	168074649	188	0.4145	SMALL-GAIN	NONFOCAL	11	"COBLL1,CSRNP3,GALNT3,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,TTC21B,XIRP2"
TCGA.CK.5914.01A	2	170747607	172704631	187	0.5276	SMALL-GAIN	NONFOCAL	12	"CYBRD1,DCAF17,DYNC1I2,ERICH2,GAD1,GORASP2,METTL8,MYO3B,SLC25A12,SP5,TLK1,UBR3"
TCGA.AG.A01W.01A	2	175703060	179052383	176	0.428	SMALL-GAIN	NONFOCAL	22	"AGPS,ATF2,ATP5G3,CHN1,EVX2,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2,NFE2L2,PDE11A,RBM45,TTC30A,TTC30B"
TCGA.AG.A00C.01A	2	176835411	177135046	27	0.4122	SMALL-GAIN	NONFOCAL	12	"EVX2,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2"
TCGA.AG.A01W.01A	2	179214162	189607886	492	0.4756	SMALL-GAIN	NONFOCAL	32	"CALCRL,CCDC141,CERKL,CWC22,DFNB59,DIRC1,DNAJC10,DUSP19,FAM171B,FKBP7,FRZB,FSIP2,GULP1,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,OSBPL6,PDE1A,PLEKHA3,PPP1R1C,PRKRA,SESTD1,SSFA2,TFPI,TTN,UBE2E3,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.3509.01A	2	179561774	198285716	974	0.385	SMALL-GAIN	NONFOCAL	60	"ANKAR,ANKRD44,ASNSD1,C2orf66,C2orf88,CALCRL,CCDC141,CCDC150,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,INPP1,ITGA4,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NUP35,ORMDL1,OSGEPL1,PDE1A,PGAP1,PMS1,PPP1R1C,SDPR,SESTD1,SF3B1,SLC39A10,SLC40A1,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AZ.4684.01A	2	179563508	198285716	973	0.4331	SMALL-GAIN	NONFOCAL	60	"ANKAR,ANKRD44,ASNSD1,C2orf66,C2orf88,CALCRL,CCDC141,CCDC150,CERKL,COL3A1,COL5A2,CWC22,DIRC1,DNAH7,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GLS,GTF3C3,GULP1,HECW2,HIBCH,INPP1,ITGA4,ITGAV,MFSD6,MSTN,MYO1B,NAB1,NABP1,NCKAP1,NEUROD1,NUP35,ORMDL1,OSGEPL1,PDE1A,PGAP1,PMS1,PPP1R1C,SDPR,SESTD1,SF3B1,SLC39A10,SLC40A1,SSFA2,STAT1,STAT4,STK17B,TFPI,TMEFF2,TMEM194B,TTN,UBE2E3,WDR75,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.A6.3808.01A	2	179654040	189849448	327	0.4146	SMALL-GAIN	NONFOCAL	28	"CALCRL,CCDC141,CERKL,COL3A1,CWC22,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGA4,ITGAV,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SESTD1,SSFA2,TFPI,TTN,UBE2E3,ZC3H15,ZNF385B,ZNF804A,ZSWIM2"
TCGA.AA.A00N.01A	2	183597150	189857561	179	0.4035	SMALL-GAIN	NONFOCAL	16	"CALCRL,COL3A1,DIRC1,DNAJC10,DUSP19,FAM171B,FRZB,FSIP2,GULP1,ITGAV,NCKAP1,NUP35,TFPI,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AG.A01W.01A	2	189634484	197358393	402	0.443	SMALL-GAIN	NONFOCAL	28	"ANKAR,ASNSD1,C2orf88,COL3A1,COL5A2,DIRC1,DNAH7,GLS,HECW2,HIBCH,INPP1,MFSD6,MSTN,MYO1B,NAB1,NABP1,ORMDL1,OSGEPL1,PMS1,SDPR,SLC39A10,SLC40A1,STAT1,STAT4,STK17B,TMEFF2,TMEM194B,WDR75"
TCGA.DM.A28A	2	190667604	209596119	4950	0.442	SMALL-GAIN	NONFOCAL	103	Too-Many
TCGA.AA.A02E.01A	2	192711152	220022166	1643	0.53	SMALL-GAIN	NONFOCAL	148	Too-Many
TCGA.CM.5868	2	196969776	202074870	1392	0.4473	SMALL-GAIN	NONFOCAL	34	"ANKRD44,AOX1,BOLL,BZW1,C2orf47,C2orf66,C2orf69,CASP10,CCDC150,CFLAR,CLK1,COQ10B,FAM126B,GTF3C3,HECW2,HSPD1,HSPE1,HSPE1-MOB4,KCTD18,MARS2,MOB4,NDUFB3,NIF3L1,ORC2,PGAP1,PLCL1,PPIL3,RFTN2,SATB2,SF3B1,SGOL2,SPATS2L,STK17B,TYW5"
TCGA.AA.3861.01A	2	197531395	198638674	169	0.5191	SMALL-GAIN	NONFOCAL	14	"ANKRD44,BOLL,C2orf66,CCDC150,COQ10B,GTF3C3,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,PGAP1,RFTN2,SF3B1"
TCGA.AG.3883	2	198091497	204512293	1471	0.3829	SMALL-GAIN	NONFOCAL	50	"ABI2,ALS2,ALS2CR11,ALS2CR12,ANKRD44,AOX1,BMPR2,BOLL,BZW1,C2orf47,C2orf69,CARF,CASP10,CASP8,CDK15,CFLAR,CLK1,COQ10B,CYP20A1,FAM117B,FAM126B,FZD7,HSPD1,HSPE1,HSPE1-MOB4,ICA1L,KCTD18,KIAA2012,MARS2,MOB4,MPP4,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,PLCL1,PPIL3,RAPH1,RFTN2,SATB2,SF3B1,SGOL2,SPATS2L,STRADB,SUMO1,TMEM237,TRAK2,TYW5,WDR12"
TCGA.AG.A01W.01A	2	198278389	200509341	36	0.6551	SMALL-GAIN	NONFOCAL	11	"BOLL,COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,PLCL1,RFTN2,SATB2,SF3B1"
TCGA.AA.3941	2	202417022	204798019	448	0.4057	SMALL-GAIN	NONFOCAL	20	"ABI2,ALS2,ALS2CR11,BMPR2,CARF,CD28,CDK15,CTLA4,CYP20A1,FAM117B,FZD7,ICA1L,KIAA2012,MPP4,NBEAL1,NOP58,RAPH1,SUMO1,TMEM237,WDR12"
TCGA.AA.3850	2	202649980	204528812	295	0.39735	SMALL-GAIN	NONFOCAL	14	"ABI2,BMPR2,CARF,CDK15,CYP20A1,FAM117B,FZD7,ICA1L,KIAA2012,NBEAL1,NOP58,RAPH1,SUMO1,WDR12"
TCGA.D5.5540	2	205883546	243048759	11993	0.4496	SMALL-GAIN	NONFOCAL	262	Too-Many
TCGA.AZ.4684.01A	2	209141394	215928738	332	0.5075	SMALL-GAIN	NONFOCAL	17	"ABCA12,ACADL,BARD1,CPS1,ERBB4,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MYL1,PIKFYVE,PTH2R,RPE,SPAG16,UNC80,VWC2L"
TCGA.AA.3509.01A	2	209165670	215928738	327	0.4583	SMALL-GAIN	NONFOCAL	17	"ABCA12,ACADL,BARD1,CPS1,ERBB4,IKZF2,KANSL1L,LANCL1,LOC100130451,MAP2,MYL1,PIKFYVE,PTH2R,RPE,SPAG16,UNC80,VWC2L"
TCGA.A6.3808.01A	2	210650750	218762479	420	0.5223	SMALL-GAIN	NONFOCAL	27	"ABCA12,ACADL,ATIC,BARD1,CPS1,ERBB4,FN1,IGFBP2,IGFBP5,IKZF2,KANSL1L,LANCL1,LOC100130451,MARCH4,MREG,MYL1,PECR,RPE,RPL37A,SMARCAL1,SPAG16,TMEM169,TNP1,TNS1,UNC80,VWC2L,XRCC5"
TCGA.CK.5914.01A	2	212589754	218938483	257	0.5981	SMALL-GAIN	NONFOCAL	21	"ABCA12,ATIC,BARD1,ERBB4,FN1,IGFBP2,IGFBP5,IKZF2,LOC100130451,MARCH4,MREG,PECR,RPL37A,RUFY4,SMARCAL1,SPAG16,TMEM169,TNP1,TNS1,VWC2L,XRCC5"
TCGA.AA.A010.01A	2	217124028	219082130	76	0.6051	SMALL-GAIN	NONFOCAL	11	"ARPC2,CXCR1,CXCR2,IGFBP2,IGFBP5,MARCH4,RPL37A,RUFY4,SMARCAL1,TNP1,TNS1"
TCGA.AA.3811	2	218647121	220715211	492	0.4077	SMALL-GAIN	NONFOCAL	56	"AAMP,ABCB6,ANKZF1,ARPC2,ASIC4,ATG9A,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,GLB1L,GMPPA,GPBAR1,IHH,INHA,LOC100996693,NHEJ1,OBSL1,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RQCD1,RUFY4,SLC11A1,SLC23A3,SLC4A3,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM198,TNS1,TTLL4,TUBA4A,USP37,VIL1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AA.3941	2	218647121	220784132	523	0.4582	SMALL-GAIN	NONFOCAL	56	"AAMP,ABCB6,ANKZF1,ARPC2,ASIC4,ATG9A,BCS1L,CATIP,CCDC108,CDK5R2,CHPF,CNPPD1,CRYBA2,CTDSP1,CXCR1,CXCR2,CYP27A1,DES,DNAJB2,DNPEP,FAM134A,FEV,GLB1L,GMPPA,GPBAR1,IHH,INHA,LOC100996693,NHEJ1,OBSL1,PLCD4,PNKD,PRKAG3,PTPRN,RESP18,RNF25,RQCD1,RUFY4,SLC11A1,SLC23A3,SLC4A3,SPEG,STK11IP,STK16,STK36,TMBIM1,TMEM198,TNS1,TTLL4,TUBA4A,USP37,VIL1,WNT10A,WNT6,ZFAND2B,ZNF142"
TCGA.AA.A00N.01A	2	220434895	227731850	236	0.4423	SMALL-GAIN	NONFOCAL	23	"ACSL3,AP1S3,CCDC140,CUL3,DOCK10,EPHA4,FAM124B,FARSB,INHA,IRS1,KCNE4,MOGAT1,MRPL44,NYAP2,OBSL1,PAX3,RHBDD1,SCG2,SERPINE2,SGPP2,SLC4A3,STK11IP,WDFY1"
TCGA.AA.A02E.01A	2	220493100	225642808	136	0.5822	SMALL-GAIN	NONFOCAL	17	"ACSL3,AP1S3,CCDC140,CUL3,DOCK10,EPHA4,FAM124B,FARSB,KCNE4,MOGAT1,MRPL44,PAX3,SCG2,SERPINE2,SGPP2,SLC4A3,WDFY1"
TCGA.CK.5914.01A	2	220496937	227898065	223	0.5598	SMALL-GAIN	NONFOCAL	21	"ACSL3,AP1S3,CCDC140,COL4A4,CUL3,DOCK10,EPHA4,FAM124B,FARSB,IRS1,KCNE4,MOGAT1,MRPL44,NYAP2,PAX3,RHBDD1,SCG2,SERPINE2,SGPP2,SLC4A3,WDFY1"
TCGA.AG.A01W.01A	2	227826225	230495425	158	0.4966	SMALL-GAIN	NONFOCAL	13	"AGFG1,C2orf83,CCL20,COL4A3,COL4A4,DAW1,DNER,MFF,PID1,RHBDD1,SLC19A3,SPHKAP,TM4SF20"
TCGA.AF.5654	2	229432619	243048759	4314	0.4325	SMALL-GAIN	NONFOCAL	123	Too-Many
TCGA.AA.3850	2	231410519	232876846	338	0.39125	SMALL-GAIN	NONFOCAL	17	"ARMC9,B3GNT7,C2orf57,C2orf72,CAB39,COPS7B,DIS3L2,GPR55,HTR2B,ITM2C,NCL,NMUR1,NPPC,PDE6D,PSMD1,PTMA,SPATA3"
TCGA.AA.3941	2	231457432	232890591	317	0.541	SMALL-GAIN	NONFOCAL	17	"ARMC9,B3GNT7,C2orf57,C2orf72,CAB39,COPS7B,DIS3L2,GPR55,HTR2B,ITM2C,NCL,NMUR1,NPPC,PDE6D,PSMD1,PTMA,SPATA3"
TCGA.AA.3941	2	233422204	234396565	297	0.5668	SMALL-GAIN	NONFOCAL	12	"ATG16L1,C2orf82,DGKD,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF,SAG,USP40"
TCGA.AA.3850	2	233428146	234396565	291	0.47835	SMALL-GAIN	NONFOCAL	12	"ATG16L1,C2orf82,DGKD,EFHD1,EIF4E2,GIGYF2,INPP5D,KCNJ13,NEU2,NGEF,SAG,USP40"
TCGA.DM.A288	2	233744020	243048759	3128	0.4253	SMALL-GAIN	NONFOCAL	84	"ACKR3,AGAP1,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ARL4C,ASB1,ASB18,ATG16L1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,COPS8,D2HGDH,DGKD,DNAJB3,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GBX2,GPC1,GPR35,HDAC4,HDLBP,HES6,HJURP,ILKAP,ING5,INPP5D,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MROH2A,MTERF4,MYEOV2,NDUFA10,NEU2,NEU4,NGEF,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SAG,SCLY,SEPT2,SH3BP4,SNED1,SPP2,STK25,THAP4,TRAF3IP1,TRPM8,TWIST2,UBE2F,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.3941	2	238027638	239574278	534	0.5128	SMALL-GAIN	NONFOCAL	17	"ASB1,COL6A3,ESPNL,FAM132B,HES6,ILKAP,KLHL30,LRRFIP1,MLPH,PER2,PRLH,RAB17,RAMP1,RBM44,SCLY,TRAF3IP1,UBE2F"
TCGA.AG.A01W.01A	2	238917826	241811699	241	0.4597	SMALL-GAIN	NONFOCAL	28	"AGXT,ANKMY1,AQP12A,AQP12B,ASB1,CAPN10,DUSP28,ESPNL,FAM132B,GPC1,GPR35,HDAC4,HES6,ILKAP,KIF1A,KLHL30,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PER2,PRR21,RNPEPL1,SCLY,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.3941	2	239670185	243048759	896	0.5108	SMALL-GAIN	NONFOCAL	38	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,ING5,KIF1A,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PPP1R7,PRR21,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4,TWIST2"
TCGA.AM.5820	2	241283625	242021215	156	0.5814	SMALL-GAIN	NONFOCAL	12	"AGXT,ANKMY1,AQP12A,AQP12B,C2orf54,CAPN10,DUSP28,GPC1,GPR35,KIF1A,RNPEPL1,SNED1"
TCGA.AG.A008.01A	2	242440786	242813848	40	0.4203	SMALL-GAIN	NONFOCAL	11	"ATG4B,BOK,D2HGDH,DTYMK,GAL3ST2,ING5,NEU4,PDCD1,RTP5,STK25,THAP4"
TCGA.EI.6510	3	70894	6317358	3381	0.4559	SMALL-GAIN	NONFOCAL	13	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3667	3	70894	59758673	20557	0.4332	SMALL-GAIN	NONFOCAL	440	Too-Many
TCGA.AA.3509.01A	3	3078816	17255662	1019	0.3916	SMALL-GAIN	NONFOCAL	96	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,CNTN4,COLQ,CPNE9,CRBN,CRELD1,DAZL,DPH3,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PLCL2,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.EI.6510	3	6338514	10006078	1758	0.4602	SMALL-GAIN	NONFOCAL	27	"ARPC4,ARPC4-TTLL3,BRPF1,CAMK1,CAV3,CIDEC,CPNE9,CRELD1,EMC3,GRM7,IL17RC,IL17RE,JAGN1,LHFPL4,LMCD1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SETD5,SRGAP3,SSUH2,TADA3,THUMPD3,TTLL3"
TCGA.AG.3909.01A	3	7188088	9739368	114	0.4183	SMALL-GAIN	NONFOCAL	11	"CAV3,GRM7,LHFPL4,LMCD1,MTMR14,OXTR,RAD18,SETD5,SRGAP3,SSUH2,THUMPD3"
TCGA.AA.3941	3	8451804	16612885	3161	0.3847	SMALL-GAIN	NONFOCAL	81	"ANKRD28,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,COLQ,CPNE9,CRELD1,DPH3,EAF1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SEC13,SETD5,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AA.3982	3	8571109	12112009	1461	0.4103	SMALL-GAIN	NONFOCAL	43	"ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BRK1,BRPF1,CAMK1,CAV3,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,GHRL,HRH1,IL17RC,IL17RE,IRAK2,JAGN1,LHFPL4,LMCD1,LOC401052,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SLC6A1,SLC6A11,SRGAP3,SSUH2,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TTLL3,VGLL4,VHL"
TCGA.AA.A00F.01A	3	9290535	10191464	154	0.3892	SMALL-GAIN	NONFOCAL	26	"ARPC4,ARPC4-TTLL3,BRK1,BRPF1,CAMK1,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IL17RE,JAGN1,LHFPL4,LOC401052,MTMR14,OGG1,PRRT3,RPUSD3,SETD5,SRGAP3,TADA3,THUMPD3,TTLL3,VHL"
TCGA.AA.3850	3	9533973	10295882	169	0.54435	SMALL-GAIN	NONFOCAL	25	"ARPC4,ARPC4-TTLL3,BRK1,BRPF1,CAMK1,CIDEC,CPNE9,CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IL17RE,IRAK2,JAGN1,LHFPL4,LOC401052,MTMR14,OGG1,PRRT3,RPUSD3,TADA3,TATDN2,TTLL3,VHL"
TCGA.AA.A010.01A	3	10145873	12231948	146	0.5664	SMALL-GAIN	NONFOCAL	16	"ATG7,ATP2B2,BRK1,FANCD2OS,GHRL,HRH1,IRAK2,SEC13,SLC6A1,SLC6A11,SYN2,TAMM41,TATDN2,TIMP4,VGLL4,VHL"
TCGA.A6.3808.01A	3	10362654	12791196	157	0.4465	SMALL-GAIN	NONFOCAL	16	"ATG7,ATP2B2,HRH1,MKRN2,MKRN2OS,PPARG,RAF1,SEC13,SLC6A1,SLC6A11,SYN2,TAMM41,TIMP4,TMEM40,TSEN2,VGLL4"
TCGA.AA.3982	3	12145348	16573139	1613	0.4028	SMALL-GAIN	NONFOCAL	39	"ANKRD28,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,DPH3,EAF1,FBLN2,FGD5,GALNT15,GRIP2,HACL1,HDAC11,IQSEC1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,OXNAD1,PPARG,RAF1,RBSN,RFTN1,RPL32,SH3BP5,SLC6A6,SYN2,TIMP4,TMEM40,TMEM43,TSEN2,WNT7A,XPC"
TCGA.AA.3941	3	31705648	33538029	551	0.4136	SMALL-GAIN	NONFOCAL	17	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GLB1,GPD1L,OSBPL10,SUSD5,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.AA.3982	3	31752436	33538029	530	0.3981	SMALL-GAIN	NONFOCAL	17	"CCR4,CLASP2,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,FBXL2,GLB1,GPD1L,OSBPL10,SUSD5,TMPPE,TRIM71,UBP1,ZNF860"
TCGA.AA.3509.01A	3	37376522	47663645	1038	0.4006	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3850	3	37977416	38548657	139	0.42685	SMALL-GAIN	NONFOCAL	12	"ACAA1,ACVR2B,CTDSPL,DLEC1,EXOG,MYD88,OXSR1,PLCD1,SLC22A13,SLC22A14,VILL,XYLB"
TCGA.AA.A00F.01A	3	38986861	39554852	53	0.4007	SMALL-GAIN	NONFOCAL	11	"CCR8,CSRNP1,CX3CR1,GORASP1,MOBP,RPSA,SCN11A,SLC25A38,TTC21A,WDR48,XIRP1"
TCGA.AA.A010.01A	3	39225357	40573564	66	0.5041	SMALL-GAIN	NONFOCAL	13	"CCR8,CX3CR1,EIF1B,ENTPD3,MOBP,MYRIP,RPL14,RPSA,SLC25A38,XIRP1,ZNF619,ZNF620,ZNF621"
TCGA.AA.3862.01A	3	43381749	44839309	101	0.453	SMALL-GAIN	NONFOCAL	15	"ABHD5,ANO10,KIAA1143,KIF15,SNRK,TCAIM,TOPAZ1,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF660,ZNF852"
TCGA.AA.3982	3	44209921	49407864	1062	0.4225	SMALL-GAIN	NONFOCAL	100	"ALS2CL,ARIH2,ARIH2OS,ATRIP,C3orf62,C3orf84,CAMP,CCDC12,CCDC36,CCDC51,CCDC71,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDC25A,CDCP1,CELSR3,CLEC3B,COL7A1,CSPG5,CXCR6,DALRD3,DHX30,ELP6,EXOSC7,FBXW12,FYCO1,GPX1,IMPDH2,IP6K2,KIAA1143,KIF15,KIF9,KLHDC8B,KLHL18,LAMB2,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,MAP4,MYL3,NBEAL2,NCKIPSD,NDUFAF3,NME6,P4HTM,PFKFB4,PLXNB1,PRKAR2A,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,PTPN23,QARS,QRICH1,RHOA,RTP3,SACM1L,SCAP,SETD2,SHISA5,SLC25A20,SLC26A6,SLC6A20,SMARCC1,SPINK8,TCAIM,TDGF1,TGM4,TMA7,TMEM158,TMEM42,TMEM89,TMIE,TOPAZ1,TREX1,UCN2,UQCRC1,USP19,USP4,WDR6,XCR1,ZDHHC3,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF589,ZNF660,ZNF852"
TCGA.AA.A010.01A	3	44938154	46875344	204	0.5175	SMALL-GAIN	NONFOCAL	31	"ALS2CL,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CXCR6,EXOSC7,FYCO1,LARS2,LIMD1,LOC100132146,LRRC2,LTF,LZTFL1,PRSS42,PRSS45,PRSS46,PRSS50,RTP3,SACM1L,SLC6A20,TDGF1,TGM4,TMEM158,TMIE,XCR1,ZDHHC3"
TCGA.AA.3941	3	46537749	50861610	479	0.5404	SMALL-GAIN	NONFOCAL	109	Too-Many
TCGA.AA.3509.01A	3	47870462	48725658	244	0.3792	SMALL-GAIN	NONFOCAL	23	"ATRIP,CAMP,CCDC51,CDC25A,CELSR3,COL7A1,DHX30,FBXW12,IP6K2,MAP4,NCKIPSD,NME6,PFKFB4,PLXNB1,SHISA5,SLC26A6,SPINK8,TMA7,TMEM89,TREX1,UCN2,UQCRC1,ZNF589"
TCGA.EI.6510	3	49406094	197833757	41796	0.4636	SMALL-GAIN	NONFOCAL	730	Too-Many
TCGA.AA.3941	3	51267349	54238057	635	0.407	SMALL-GAIN	NONFOCAL	59	"ABHD14A,ABHD14B,ACTR8,ACY1,ALAS1,BAP1,CACNA1D,CACNA2D3,CHDH,DCP1A,DNAH1,DOCK3,DUSP7,GLT8D1,GLYCTK,GNL3,GPR62,GRM2,IL17RB,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,ITIH1,ITIH3,ITIH4,MANF,MUSTN1,NEK4,NISCH,NT5DC2,PARP3,PBRM1,PCBP4,PHF7,POC1A,PPM1M,PRKCD,RAD54L2,RBM15B,RFT1,RPL29,RRP9,SELK,SEMA3G,SFMBT1,SMIM4,SPCS1,STAB1,TEX264,TKT,TLR9,TMEM110,TMEM110-MUSTN1,TNNC1,TWF2,VPRBP,WDR82"
TCGA.AG.3598	3	52378539	82439425	10937	0.5715	SMALL-GAIN	NONFOCAL	100	"ABHD6,ACOX2,ACTR8,ADAMTS9,APPL1,ARF4,ARHGEF3,ARL6IP5,ASB14,ATXN7,BAP1,C3orf14,C3orf67,CACNA1D,CACNA2D3,CADPS,CCDC66,CHDH,CNTN3,DCP1A,DENND6A,DNAH1,DNAH12,DNASE1L3,EBLN2,EIF4E3,EOGT,ERC2,FAM107A,FAM19A1,FAM19A4,FAM208A,FAM3D,FEZF2,FHIT,FLNB,FOXP1,FRG2C,FRMD4B,GBE1,GLT8D1,GNL3,GPR27,GXYLT2,HESX1,IL17RB,IL17RD,ITIH1,ITIH3,ITIH4,KBTBD8,KCTD6,LMOD3,LRIG1,LRTM1,MAGI1,MITF,MUSTN1,NEK4,NISCH,NT5DC2,PBRM1,PDE12,PDHB,PDZRN3,PHF7,PPP4R2,PRICKLE2,PRKCD,PROK2,PSMD6,PTPRG,PXK,RFT1,ROBO1,ROBO2,RPP14,RYBP,SELK,SEMA3G,SFMBT1,SHQ1,SLC25A26,SLMAP,SMIM4,SNTN,SPATA12,SPCS1,STAB1,SUCLG2,SYNPR,THOC7,TKT,TMEM110,TMEM110-MUSTN1,TMF1,TNNC1,UBA3,WNT5A,ZNF717"
TCGA.AA.3941	3	57405608	58668264	331	0.513	SMALL-GAIN	NONFOCAL	15	"ABHD6,ACOX2,ARF4,DENND6A,DNAH12,DNASE1L3,FAM107A,FAM3D,FLNB,KCTD6,PDE12,PDHB,PXK,RPP14,SLMAP"
TCGA.A6.3808.01A	3	58490884	66432690	222	0.6402	SMALL-GAIN	NONFOCAL	19	"ACOX2,ADAMTS9,ATXN7,C3orf14,C3orf67,CADPS,FAM107A,FAM3D,FEZF2,FHIT,LRIG1,MAGI1,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SYNPR,THOC7"
TCGA.AA.3660	3	59227331	197475439	39332	0.4112	SMALL-GAIN	NONFOCAL	596	Too-Many
TCGA.AA.3667	3	60110528	129828077	19532	0.4208	SMALL-GAIN	NONFOCAL	261	Too-Many
TCGA.G4.6294	3	60592404	174836131	31810	0.4374	SMALL-GAIN	NONFOCAL	461	Too-Many
TCGA.AG.3726	3	66293687	174634509	29102	0.398	SMALL-GAIN	NONFOCAL	448	Too-Many
TCGA.AA.3860	3	69305460	90264055	5524	0.3976	SMALL-GAIN	NONFOCAL	27	"C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EPHA3,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,MITF,PDZRN3,POU1F1,PPP4R2,PROK2,ROBO1,ROBO2,RYBP,SHQ1,VGLL3,ZNF654,ZNF717"
TCGA.AA.3509.01A	3	73113107	97806595	258	0.4798	SMALL-GAIN	NONFOCAL	28	"ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,CRYBG3,DHFRL1,EPHA3,EPHA6,FRG2C,GABRR3,GBE1,HTR1F,MINA,NSUN3,OR5AC2,PDZRN3,POU1F1,PPP4R2,PROS1,ROBO1,ROBO2,STX19,VGLL3,ZNF654,ZNF717"
TCGA.AZ.4684.01A	3	77147136	98239960	231	0.616	SMALL-GAIN	NONFOCAL	33	"ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CLDND1,CRYBG3,DHFRL1,EPHA3,EPHA6,GABRR3,GBE1,HTR1F,MINA,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,POU1F1,PROS1,ROBO1,ROBO2,STX19,VGLL3,ZNF654"
TCGA.A6.3808.01A	3	77530233	89521575	116	0.4895	SMALL-GAIN	NONFOCAL	12	"C3orf38,CADM2,CGGBP1,CHMP2B,EPHA3,GBE1,HTR1F,POU1F1,ROBO1,ROBO2,VGLL3,ZNF654"
TCGA.CL.5917	3	86200983	197833757	29806	0.5922	SMALL-GAIN	NONFOCAL	558	Too-Many
TCGA.AG.3612	3	86832074	197833757	29564	0.6341	SMALL-GAIN	NONFOCAL	558	Too-Many
TCGA.AZ.4614	3	89911475	175068217	22358	0.4864	SMALL-GAIN	NONFOCAL	410	Too-Many
TCGA.AA.3979	3	93543005	194769623	28433	0.5433	SMALL-GAIN	NONFOCAL	516	Too-Many
TCGA.DM.A288	3	93543005	197833757	28992	0.561	SMALL-GAIN	NONFOCAL	550	Too-Many
TCGA.A6.3808.01A	3	93781889	98539051	112	0.5636	SMALL-GAIN	NONFOCAL	22	"ARL6,CLDND1,CPOX,CRYBG3,DCBLD2,DHFRL1,EPHA6,GABRR3,GPR15,MINA,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,ST3GAL6"
TCGA.DY.A1DC	3	94333508	98922113	977	0.653	SMALL-GAIN	NONFOCAL	20	"ARL6,CLDND1,CPOX,CRYBG3,DCBLD2,EPHA6,GABRR3,GPR15,MINA,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,ST3GAL6"
TCGA.AG.3598	3	95184352	106747740	2760	0.4661	SMALL-GAIN	NONFOCAL	43	"ABI3BP,ADGRG7,ALCAM,ARL6,CBLB,CEP97,CLDND1,CMSS1,COL8A1,CPOX,CRYBG3,DCBLD2,EPHA6,FILIP1L,GABRR3,GPR15,IMPG2,LNP1,MINA,NFKBIZ,NIT2,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,RPL24,SENP7,ST3GAL6,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11,ZPLD1"
TCGA.AF.3913	3	96587932	129828077	9231	0.5841	SMALL-GAIN	NONFOCAL	205	Too-Many
TCGA.DY.A1DC	3	99118312	105262147	1486	0.6749	SMALL-GAIN	NONFOCAL	22	"ABI3BP,ADGRG7,ALCAM,CEP97,CMSS1,COL8A1,FILIP1L,IMPG2,LNP1,NFKBIZ,NIT2,NXPE3,PCNP,RPL24,SENP7,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11,ZPLD1"
TCGA.A6.3808.01A	3	101578092	124356001	1161	0.4858	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.AZ.4684.01A	3	102195769	108813707	203	0.6269	SMALL-GAIN	NONFOCAL	15	"ALCAM,BBX,CBLB,CCDC54,CD47,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1,ZPLD1"
TCGA.AA.A01Q.01A	3	105290643	113649514	410	0.5521	SMALL-GAIN	NONFOCAL	44	"ABHD10,ALCAM,ATG3,ATP6V1A,BBX,BOC,BTLA,C3orf17,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CFAP44,DPPA2,DPPA4,DZIP3,GCSAM,GRAMD1C,GTPBP8,GUCA1C,HHLA2,IFT57,KIAA1524,KIAA2018,MORC1,MYH15,NAA50,PHLDB2,PLCXD2,PVRL3,RETNLB,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TMPRSS7,TRAT1,ZBED2"
TCGA.AA.A00N.01A	3	108836804	111794160	83	0.6157	SMALL-GAIN	NONFOCAL	11	"ABHD10,CD96,DPPA2,DPPA4,MORC1,PHLDB2,PLCXD2,PVRL3,TAGLN3,TMPRSS7,ZBED2"
TCGA.DY.A1DC	3	110273858	116302666	1756	0.6456	SMALL-GAIN	NONFOCAL	37	"ABHD10,ATG3,ATP6V1A,BOC,BTLA,C3orf17,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,CFAP44,DRD3,GAP43,GCSAM,GRAMD1C,GTPBP8,KIAA1407,KIAA2018,LSAMP,NAA50,PHLDB2,PLCXD2,PVRL3,QTRTD1,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TIGIT,TMPRSS7,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.AZ.4684.01A	3	111851855	112731532	87	0.6674	SMALL-GAIN	NONFOCAL	11	"ATG3,BTLA,C3orf17,CCDC80,CD200,CD200R1,CD200R1L,GCSAM,GTPBP8,SLC35A5,SLC9C1"
TCGA.AG.3598	3	112838744	114206586	359	0.4709	SMALL-GAIN	NONFOCAL	15	"ATP6V1A,BOC,CFAP44,DRD3,GRAMD1C,KIAA1407,KIAA2018,NAA50,QTRTD1,SIDT1,SPICE1,TIGIT,ZBTB20,ZDHHC23,ZNF80"
TCGA.AG.3909.01A	3	113677163	119165838	93	0.3899	SMALL-GAIN	NONFOCAL	15	"ARHGAP31,B4GALT4,C3orf30,DRD3,GAP43,IGSF11,KIAA1407,LSAMP,QTRTD1,TIGIT,TMEM39A,UPK1B,ZBTB20,ZDHHC23,ZNF80"
TCGA.AA.A01Q.01A	3	113677163	121263527	248	0.6707	SMALL-GAIN	NONFOCAL	34	"ADPRH,ARHGAP31,B4GALT4,C3orf30,CD80,COX17,DRD3,FSTL1,GAP43,GPR156,GSK3B,GTF2E1,HGD,IGSF11,KIAA1407,LRRC58,LSAMP,MAATS1,NDUFB4,NR1I2,PLA1A,POGLUT1,POLQ,POPDC2,QTRTD1,RABL3,STXBP5L,TIGIT,TIMMDC1,TMEM39A,UPK1B,ZBTB20,ZDHHC23,ZNF80"
TCGA.AG.3598	3	114566708	119277308	1535	0.4473	SMALL-GAIN	NONFOCAL	12	"ARHGAP31,B4GALT4,C3orf30,CD80,GAP43,IGSF11,LSAMP,POGLUT1,TIMMDC1,TMEM39A,UPK1B,ZBTB20"
TCGA.DY.A1DC	3	117618519	132074849	4156	0.6262	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.F5.6863	3	117644796	197833757	22627	0.4082	SMALL-GAIN	NONFOCAL	451	Too-Many
TCGA.AA.A00N.01A	3	119207707	121240803	179	0.5362	SMALL-GAIN	NONFOCAL	19	"ADPRH,CD80,COX17,FSTL1,GPR156,GSK3B,GTF2E1,HGD,LRRC58,MAATS1,NDUFB4,NR1I2,PLA1A,POGLUT1,POLQ,POPDC2,RABL3,STXBP5L,TIMMDC1"
TCGA.AG.3598	3	120076748	122027061	459	0.6529	SMALL-GAIN	NONFOCAL	17	"ARGFX,CASR,CD86,EAF2,FBXO40,FSTL1,GOLGB1,GTF2E1,HCLS1,HGD,ILDR1,IQCB1,NDUFB4,POLQ,RABL3,SLC15A2,STXBP5L"
TCGA.AA.A010.01A	3	121491353	122186132	85	0.4806	SMALL-GAIN	NONFOCAL	11	"CASR,CCDC58,CD86,CSTA,EAF2,FAM162A,ILDR1,IQCB1,KPNA1,SLC15A2,WDR5B"
TCGA.AG.3598	3	122044554	127343901	1713	0.562	SMALL-GAIN	NONFOCAL	45	"ADCY5,ALDH1L1,ALG1L,C3orf22,C3orf56,CCDC14,CCDC37,CCDC58,CHCHD6,CHST13,CSTA,DIRC2,DTX3L,FAM162A,HACD2,HEG1,HSPBAP1,ITGB5,KALRN,KLF15,KPNA1,MCM2,MUC13,MYLK,OSBPL11,PARP14,PARP15,PARP9,PDIA5,PLXNA1,ROPN1,ROPN1B,SEC22A,SEMA5B,SLC12A8,SLC41A3,SNX4,TPRA1,TXNRD3,TXNRD3NB,UMPS,UROC1,WDR5B,ZNF148,ZXDC"
TCGA.AA.3941	3	124224933	129946917	1548	0.4082	SMALL-GAIN	NONFOCAL	57	"ABTB1,ACAD9,ALDH1L1,ALG1L,ALG1L2,C3orf22,C3orf56,CCDC37,CHCHD6,CHST13,CNBP,COPG1,DNAJB8,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HEG1,HMCES,IFT122,ISY1,ISY1-RAB43,ITGB5,KALRN,KBTBD12,KIAA1257,KLF15,MBD4,MCM2,MGLL,MUC13,OSBPL11,PLXNA1,PLXND1,PODXL2,RAB43,RAB7A,RHO,ROPN1B,RPN1,RUVBL1,SEC61A1,SLC12A8,SLC41A3,SNX4,TMCC1,TPRA1,TRH,TXNRD3,TXNRD3NB,UMPS,UROC1,ZNF148,ZXDC"
TCGA.AA.3819	3	127895225	197833757	19612	0.3864	SMALL-GAIN	NONFOCAL	365	Too-Many
TCGA.AA.A01Q.01A	3	129370304	131415323	106	0.484	SMALL-GAIN	NONFOCAL	12	"ALG1L2,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,MRPL3,NEK11,NUDT16,PIK3R4,TMCC1,TRH"
TCGA.AA.3667	3	129892968	138877109	2479	0.4463	SMALL-GAIN	NONFOCAL	54	"A4GNT,ACAD11,ACKR4,ACPP,AMOTL2,ANAPC13,ARMC8,ASTE1,ATP2C1,BFSP2,C3orf36,CDV3,CEP63,CEP70,CLDN18,COL6A5,COL6A6,CPNE4,DBR1,DNAJC13,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,IL20RB,KY,MRAS,MRPL3,MSL2,NCK1,NEK11,NME9,NPHP3,NUDT16,PCCB,PIK3CB,PIK3R4,PPP2R3A,PRR23A,PRR23B,PRR23C,RAB6B,RYK,SLC35G2,SLCO2A1,SOX14,SRPRB,STAG1,TF,TMEM108,TOPBP1,UBA5"
TCGA.AA.3666	3	129892968	197833757	19225	0.3973	SMALL-GAIN	NONFOCAL	340	Too-Many
TCGA.G4.6626	3	129920257	174289841	12450	0.486	SMALL-GAIN	NONFOCAL	199	Too-Many
TCGA.AZ.4684.01A	3	130103629	132413654	257	0.4772	SMALL-GAIN	NONFOCAL	15	"ACAD11,ACKR4,ACPP,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,DNAJC13,MRPL3,NEK11,NPHP3,NUDT16,PIK3R4,UBA5"
TCGA.AA.A00N.01A	3	130107376	132166663	169	0.6026	SMALL-GAIN	NONFOCAL	11	"ACPP,ASTE1,ATP2C1,COL6A5,COL6A6,CPNE4,DNAJC13,MRPL3,NEK11,NUDT16,PIK3R4"
TCGA.DM.A1D0	3	130971389	174116453	12080	0.4713	SMALL-GAIN	NONFOCAL	194	Too-Many
TCGA.AF.3913	3	131242863	151645021	6053	0.5908	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.DY.A1DC	3	132642208	144184472	3400	0.6412	SMALL-GAIN	NONFOCAL	66	"A4GNT,AMOTL2,ANAPC13,ARMC8,ATP1B3,ATR,BFSP2,C3orf36,C3orf58,CDV3,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COPB2,DBR1,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPS22,MSL2,NCK1,NME9,NMNAT3,PAQR9,PCCB,PCOLCE2,PIK3CB,PLS1,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RAB6B,RASA2,RBP1,RBP2,RNF7,RYK,SLC25A36,SLC35G2,SLC9A9,SLCO2A1,SOX14,SPSB4,SRPRB,STAG1,TF,TFDP2,TMEM108,TOPBP1,TRIM42,TRPC1,U2SURP,XRN1,ZBTB38"
TCGA.AA.A01Q.01A	3	134225900	143708320	483	0.6385	SMALL-GAIN	NONFOCAL	54	"A4GNT,ARMC8,ATP1B3,ATR,C3orf58,CEP63,CEP70,CHST2,CLDN18,CLSTN2,COPB2,DBR1,DZIP1L,EPHB1,ESYT3,FAIM,FOXL2,FOXL2NB,GK5,GRK7,IL20RB,KY,MRAS,MRPS22,MSL2,NCK1,NME9,NMNAT3,PAQR9,PCCB,PCOLCE2,PIK3CB,PLS1,PPP2R3A,PRR23A,PRR23B,PRR23C,PXYLP1,RASA2,RBP1,RBP2,RNF7,SLC25A36,SLC35G2,SLC9A9,SOX14,SPSB4,STAG1,TFDP2,TRIM42,TRPC1,U2SURP,XRN1,ZBTB38"
TCGA.AY.6196	3	136746021	138777174	429	0.422	SMALL-GAIN	NONFOCAL	17	"A4GNT,ARMC8,CEP70,CLDN18,DBR1,DZIP1L,ESYT3,FAIM,FOXL2,FOXL2NB,MRAS,NME9,PIK3CB,PRR23A,PRR23B,PRR23C,SOX14"
TCGA.AA.3667	3	138882075	197833757	16746	0.4425	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.AA.3941	3	140636789	142496725	389	0.4143	SMALL-GAIN	NONFOCAL	14	"ATP1B3,ATR,GK5,GRK7,PLS1,PXYLP1,RASA2,RNF7,SLC25A36,SPSB4,TFDP2,TRPC1,XRN1,ZBTB38"
TCGA.DY.A1DC	3	144253390	157170523	3623	0.6655	SMALL-GAIN	NONFOCAL	59	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,C3orf33,C3orf79,CCNL1,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GMPS,GPR149,GPR171,GPR87,GYG1,HLTF,HPS3,IGSF10,KCNAB1,LEKR1,MBNL1,MED12L,MME,P2RY1,P2RY12,P2RY13,P2RY14,PFN2,PLCH1,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PTX3,RAP2B,RNF13,SELT,SERP1,SIAH2,SLC33A1,SSR3,SUCNR1,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TSC22D2,VEPH1,WWTR1,ZIC1,ZIC4"
TCGA.AA.A01Q.01A	3	145824301	151102801	215	0.5657	SMALL-GAIN	NONFOCAL	35	"AGTR1,ANKUB1,CLRN1,COMMD2,CP,CPA3,CPB1,EIF2A,ERICH6,GPR171,GPR87,GYG1,HLTF,HPS3,MED12L,P2RY12,P2RY13,P2RY14,PFN2,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,RNF13,SELT,SERP1,SIAH2,TM4SF1,TM4SF18,TM4SF4,TSC22D2,WWTR1,ZIC1,ZIC4"
TCGA.AA.A01Q.01A	3	151150468	167812857	413	0.4818	SMALL-GAIN	NONFOCAL	57	"AADAC,AADACL2,ARHGEF26,ARL14,B3GALNT1,BCHE,C3orf33,C3orf79,C3orf80,CCNL1,DHX36,GFM1,GMPS,GOLIM4,GPR149,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,KPNA4,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,NMD3,OTOL1,P2RY1,PDCD10,PLCH1,PPM1L,PQLC2L,PTX3,RAP2B,RARRES1,RSRC1,SCHIP1,SERPINI1,SERPINI2,SHOX2,SI,SLC33A1,SLITRK3,SMC4,SPTSSB,SSR3,SUCNR1,TIPARP,TMEM14E,TRIM59,VEPH1,WDR49,ZBBX"
TCGA.AF.3913	3	151816869	197833757	12729	0.5806	SMALL-GAIN	NONFOCAL	220	Too-Many
TCGA.AA.A00O.01A	3	152880432	158402264	207	0.3802	SMALL-GAIN	NONFOCAL	23	"ARHGEF26,C3orf33,C3orf79,CCNL1,DHX36,GFM1,GMPS,GPR149,KCNAB1,LEKR1,LXN,MLF1,MME,PLCH1,PQLC2L,PTX3,RAP2B,RSRC1,SHOX2,SLC33A1,SSR3,TIPARP,VEPH1"
TCGA.AA.3952	3	157075738	197833757	11338	0.4114	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.DY.A1DC	3	157183135	162489465	1446	0.6615	SMALL-GAIN	NONFOCAL	24	"ARL14,B3GALNT1,C3orf80,GFM1,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KPNA4,LXN,MFSD1,MLF1,NMD3,OTOL1,PPM1L,PQLC2L,RARRES1,RSRC1,SCHIP1,SHOX2,SMC4,SPTSSB,TRIM59,VEPH1"
TCGA.AA.3679	3	161135695	174559410	3598	0.4109	SMALL-GAIN	NONFOCAL	37	"ACTRT3,BCHE,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,NLGN1,OTOL1,PDCD10,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SPATA16,TMEM212,TNFSF10,TNIK,WDR49,ZBBX"
TCGA.AA.A010.01A	3	167272422	170020805	135	0.4509	SMALL-GAIN	NONFOCAL	15	"ACTRT3,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,PDCD10,PHC3,PRKCI,SAMD7,SEC62,SERPINI1,WDR49"
TCGA.AA.3941	3	169512144	170410058	230	0.4312	SMALL-GAIN	NONFOCAL	11	"CLDN11,GPR160,LRRC31,LRRC34,LRRIQ4,PHC3,PRKCI,SAMD7,SEC62,SKIL,SLC7A14"
TCGA.A6.3808.01A	3	170723027	176767748	160	0.5804	SMALL-GAIN	NONFOCAL	13	"ECT2,FNDC3B,GHSR,NAALADL2,NCEH1,NLGN1,PLD1,SLC2A2,SPATA16,TBL1XR1,TMEM212,TNFSF10,TNIK"
TCGA.G4.6626	3	174511327	197833757	6698	0.4864	SMALL-GAIN	NONFOCAL	141	Too-Many
TCGA.DM.A1D0	3	174546684	197686321	6641	0.4806	SMALL-GAIN	NONFOCAL	140	Too-Many
TCGA.DY.A1DC	3	174848665	197833757	6568	0.6584	SMALL-GAIN	NONFOCAL	141	Too-Many
TCGA.AA.3679	3	174898257	197833757	6572	0.4091	SMALL-GAIN	NONFOCAL	141	Too-Many
TCGA.G4.6294	3	174992291	197833757	6530	0.4299	SMALL-GAIN	NONFOCAL	141	Too-Many
TCGA.AZ.4614	3	175384005	187954413	3409	0.4715	SMALL-GAIN	NONFOCAL	81	"ABCC5,ABCF3,ACTL6A,ADIPOQ,AHSG,ALG3,AP2M1,ATP11B,B3GNT5,BCL6,C3orf70,CAMK2N2,CCDC39,CHRD,CLCN2,CRYGS,DCUN1D1,DGKG,DNAJB11,DNAJC19,DVL3,ECE2,EHHADH,EIF2B5,EIF4A2,EIF4G1,EPHB3,ETV5,FAM131A,FETUB,FXR1,GNB4,HRG,HTR3C,HTR3D,HTR3E,IGF2BP2,KCNMB2,KCNMB3,KLHL24,KLHL6,KNG1,LAMP3,LIPH,LPP,MAGEF1,MAP3K13,MAP6D1,MASP1,MCCC1,MCF2L2,MFN1,MRPL47,NAALADL2,NDUFB5,PARL,PEX5L,PIK3CA,POLR2H,PSMD2,RFC4,RPL39L,RTP1,RTP2,RTP4,SENP2,SOX2,SST,ST6GAL1,TBCCD1,TBL1XR1,THPO,TMEM41A,TRA2B,TTC14,USP13,VPS8,VWA5B2,YEATS2,ZMAT3,ZNF639"
TCGA.AG.3726	3	175425262	197790191	6361	0.4027	SMALL-GAIN	NONFOCAL	141	Too-Many
TCGA.AA.3664	3	175496865	197833757	6358	0.4328	SMALL-GAIN	NONFOCAL	141	Too-Many
TCGA.AG.3742	3	176261512	197833757	6115	0.4104	SMALL-GAIN	NONFOCAL	140	Too-Many
TCGA.AA.A01Q.01A	3	178543338	183853127	278	0.5993	SMALL-GAIN	NONFOCAL	33	"ABCC5,ACTL6A,ATP11B,B3GNT5,CCDC39,DCUN1D1,DNAJC19,EIF2B5,FXR1,GNB4,HTR3C,HTR3D,HTR3E,KCNMB2,KCNMB3,KLHL24,KLHL6,LAMP3,MAP6D1,MCCC1,MCF2L2,MFN1,MRPL47,NDUFB5,PARL,PEX5L,PIK3CA,SOX2,TTC14,USP13,YEATS2,ZMAT3,ZNF639"
TCGA.AA.3941	3	182664546	184532027	518	0.4991	SMALL-GAIN	NONFOCAL	32	"ABCC5,ABCF3,ALG3,AP2M1,B3GNT5,CAMK2N2,CHRD,CLCN2,DCUN1D1,DVL3,ECE2,EIF2B5,EIF4G1,EPHB3,FAM131A,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,LAMP3,MAGEF1,MAP6D1,MCCC1,MCF2L2,PARL,POLR2H,PSMD2,THPO,VPS8,VWA5B2,YEATS2"
TCGA.AG.3909.01A	3	182923606	183823575	126	0.402	SMALL-GAIN	NONFOCAL	11	"ABCC5,B3GNT5,HTR3C,HTR3D,HTR3E,KLHL24,KLHL6,MAP6D1,MCF2L2,PARL,YEATS2"
TCGA.AA.A010.01A	3	185635409	191047422	237	0.3836	SMALL-GAIN	NONFOCAL	33	"ADIPOQ,AHSG,BCL6,CCDC50,CLDN1,CLDN16,CRYGS,DGKG,DNAJB11,EIF4A2,ETV5,FETUB,GMNC,HRG,IL1RAP,KNG1,LPP,MASP1,OSTN,P3H2,RFC4,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TBCCD1,TMEM207,TP63,TPRG1,TRA2B,UTS2B"
TCGA.AA.A01Q.01A	3	186570810	193409828	229	0.6152	SMALL-GAIN	NONFOCAL	28	"ADIPOQ,ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MASP1,MB21D2,OPA1,OSTN,P3H2,PYDC2,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AZ.4614	3	188587647	197833757	2649	0.4796	SMALL-GAIN	NONFOCAL	61	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,FAM43A,FBXO45,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,IL1RAP,IQCG,KIAA0226,LMLN,LPP,LRCH3,LRRC15,LSG1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AZ.4684.01A	3	188590384	193384034	180	0.4151	SMALL-GAIN	NONFOCAL	19	"ATP13A4,ATP13A5,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MB21D2,OPA1,OSTN,P3H2,PYDC2,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AG.3896	3	188936757	197833757	2565	0.3845	SMALL-GAIN	NONFOCAL	60	"ACAP2,APOD,ATP13A3,ATP13A4,ATP13A5,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,DLG1,FAM43A,FBXO45,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,IL1RAP,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM44,TNK2,TP63,TPRG1,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.3909.01A	3	190321895	193125056	71	0.4114	SMALL-GAIN	NONFOCAL	11	"ATP13A4,ATP13A5,CCDC50,FGF12,GMNC,HRASLS,IL1RAP,MB21D2,OSTN,PYDC2,UTS2B"
TCGA.AA.3850	3	193153561	197833757	1076	0.39845	SMALL-GAIN	NONFOCAL	44	"ACAP2,APOD,ATP13A3,ATP13A4,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.3941	3	193267952	197833757	1061	0.4968	SMALL-GAIN	NONFOCAL	44	"ACAP2,APOD,ATP13A3,ATP13A4,BDH1,CEP19,CPN2,DLG1,FAM43A,FBXO45,FYTTD1,GP5,HES1,IQCG,KIAA0226,LMLN,LRCH3,LRRC15,LSG1,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TMEM44,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.3979	3	194780748	197833757	521	0.6215	SMALL-GAIN	NONFOCAL	34	"ACAP2,APOD,BDH1,CEP19,DLG1,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,MUC20,MUC4,NCBP2,NRROS,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,RNF168,RPL35A,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.A6.2674	3	194935313	196617377	235	0.6324	SMALL-GAIN	NONFOCAL	23	"ACAP2,APOD,CEP19,FBXO45,MUC20,MUC4,NRROS,PAK2,PCYT1A,PIGX,PPP1R2,RNF168,SENP5,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,XXYLT1,ZDHHC19"
TCGA.AG.A00C.01A	3	195611645	196532152	86	0.413	SMALL-GAIN	NONFOCAL	16	"CEP19,FBXO45,NRROS,PAK2,PCYT1A,PIGX,RNF168,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.AA.A01Q.01A	3	195615259	196460621	63	0.428	SMALL-GAIN	NONFOCAL	15	"CEP19,FBXO45,NRROS,PCYT1A,PIGX,RNF168,SLC51A,SMCO1,TCTEX1D2,TFRC,TM4SF19,TNK2,UBXN7,WDR53,ZDHHC19"
TCGA.D5.6923	3	196167929	197833757	322	0.4376	SMALL-GAIN	NONFOCAL	20	"BDH1,CEP19,DLG1,FBXO45,FYTTD1,IQCG,KIAA0226,LMLN,LRCH3,MFI2,NCBP2,NRROS,PAK2,PIGX,PIGZ,RNF168,RPL35A,SENP5,SMCO1,WDR53"
TCGA.EI.6508	4	69712	4748272	986	0.3999	SMALL-GAIN	NONFOCAL	61	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.RU.A8FL	4	69712	11986161	4050	0.5751	SMALL-GAIN	NONFOCAL	119	Too-Many
TCGA.A6.6140	4	69712	17290360	6231	0.4033	SMALL-GAIN	NONFOCAL	134	Too-Many
TCGA.EI.6510	4	69712	23269798	8087	0.3982	SMALL-GAIN	NONFOCAL	147	Too-Many
TCGA.AD.A5EK	4	69712	190921708	54483	0.4573	SMALL-GAIN	NONFOCAL	733	Too-Many
TCGA.AA.3870	4	74237	1416862	216	0.4934	SMALL-GAIN	NONFOCAL	25	"ATP5I,CPLX1,CRIPAK,CTBP1,DGKQ,FGFRL1,GAK,IDUA,MAEA,MFSD7,MYL5,NKX1-1,PCGF3,PDE6B,PIGG,RNF212,SLC26A1,SPON2,TMEM175,UVSSA,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3941	4	276982	4285220	727	0.5485	SMALL-GAIN	NONFOCAL	56	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZFYVE28,ZNF141,ZNF721,ZNF732"
TCGA.AM.5820	4	512827	1002124	58	0.6317	SMALL-GAIN	NONFOCAL	12	"ATP5I,CPLX1,DGKQ,GAK,IDUA,MFSD7,MYL5,PCGF3,PDE6B,PIGG,SLC26A1,TMEM175"
TCGA.AA.3982	4	512827	4499019	803	0.4738	SMALL-GAIN	NONFOCAL	56	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,DOK7,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28"
TCGA.AG.3605.01A	4	1957428	10444769	28	0.4318	SMALL-GAIN	NONFOCAL	86	"ABLIM2,ACOX3,ADD1,ADRA2C,AFAP1,BLOC1S4,C4orf48,CCDC96,CFAP99,CPZ,CRMP1,CYTL1,DEFB131,DOK7,DRD5,EVC,EVC2,FAM193A,GPR78,GRK4,GRPEL1,HAUS3,HGFAC,HMX1,HTRA3,HTT,JAKMIP1,KIAA0232,LOC389199,LOC650293,LRPAP1,LYAR,MAN2B2,MFSD10,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,NAT8L,NELFA,NOP14,NSG1,OTOP1,POLN,PPP2R2C,PSAPL1,RGS12,RNF4,S100P,SH3BP2,SH3TC1,SLC2A9,SORCS2,STK32B,STX18,TADA2B,TBC1D14,TMEM128,TNIP2,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF518B"
TCGA.EI.6508	4	4863744	29425554	9199	0.4323	SMALL-GAIN	NONFOCAL	102	Too-Many
TCGA.AA.3982	4	5434856	9381817	1485	0.4436	SMALL-GAIN	NONFOCAL	49	"ABLIM2,ACOX3,AFAP1,BLOC1S4,CCDC96,CPZ,CRMP1,EVC,EVC2,GPR78,GRPEL1,HMX1,HTRA3,JAKMIP1,KIAA0232,LOC389199,LOC650293,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,PSAPL1,S100P,SH3TC1,SORCS2,STK32B,TADA2B,TBC1D14,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WFS1"
TCGA.AA.3941	4	5436103	9381817	1480	0.4902	SMALL-GAIN	NONFOCAL	49	"ABLIM2,ACOX3,AFAP1,BLOC1S4,CCDC96,CPZ,CRMP1,EVC,EVC2,GPR78,GRPEL1,HMX1,HTRA3,JAKMIP1,KIAA0232,LOC389199,LOC650293,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,PSAPL1,S100P,SH3TC1,SORCS2,STK32B,TADA2B,TBC1D14,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WFS1"
TCGA.RU.A8FL	4	15094672	16533375	589	0.6357	SMALL-GAIN	NONFOCAL	11	"BST1,C1QTNF7,CC2D2A,CD38,FAM200B,FBXL5,FGFBP1,FGFBP2,LDB2,PROM1,TAPT1"
TCGA.A6.3808.01A	4	17634105	37435451	352	0.528	SMALL-GAIN	NONFOCAL	29	"ADGRA3,ANAPC4,ARAP2,CCDC149,CCKAR,DCAF16,DHX15,DTHD1,FAM184B,GBA3,KCNIP4,LCORL,LGI2,NCAPG,NWD2,PACRGL,PCDH7,PI4K2B,PPARGC1A,RBPJ,SEL1L3,SEPSECS,SLC34A2,SLIT2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.EI.6510	4	23279974	63223985	10795	0.4112	SMALL-GAIN	NONFOCAL	117	Too-Many
TCGA.RU.A8FL	4	24397675	27327383	1023	0.6411	SMALL-GAIN	NONFOCAL	15	"ANAPC4,CCDC149,CCKAR,DHX15,LGI2,PI4K2B,RBPJ,SEL1L3,SEPSECS,SLC34A2,SMIM20,SOD3,STIM2,TBC1D19,ZCCHC4"
TCGA.CM.5862	4	28237782	44186432	4805	0.6221	SMALL-GAIN	NONFOCAL	42	"APBB2,ARAP2,ATP8A1,BEND4,C4orf19,CHRNA9,DCAF4L1,DTHD1,FAM114A1,GRXCR1,KCTD8,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PCDH7,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3850	4	38782480	40929297	564	0.39685	SMALL-GAIN	NONFOCAL	21	"APBB2,CHRNA9,FAM114A1,KLB,KLHL5,LIAS,N4BP2,NSUN7,PDS5A,RBM47,RFC1,RHOH,RPL9,SMIM14,TLR1,TLR10,TLR6,TMEM156,UBE2K,UGDH,WDR19"
TCGA.AA.3941	4	38912483	41169149	603	0.485	SMALL-GAIN	NONFOCAL	18	"APBB2,CHRNA9,FAM114A1,KLB,KLHL5,LIAS,N4BP2,NSUN7,PDS5A,RBM47,RFC1,RHOH,RPL9,SMIM14,TMEM156,UBE2K,UGDH,WDR19"
TCGA.AA.A00N.01A	4	41673550	44680588	99	0.4023	SMALL-GAIN	NONFOCAL	12	"ATP8A1,BEND4,DCAF4L1,GRXCR1,GUF1,KCTD8,LIMCH1,PHOX2B,SHISA3,SLC30A9,TMEM33,YIPF7"
TCGA.F4.6808	4	47696233	49063478	268	0.5047	SMALL-GAIN	NONFOCAL	13	"CNGA1,CORIN,CWH43,FRYL,NFXL1,NIPAL1,OCIAD1,OCIAD2,SLAIN2,SLC10A4,TEC,TXK,ZAR1"
TCGA.AG.3612	4	49061140	87424338	10018	0.6717	SMALL-GAIN	NONFOCAL	170	Too-Many
TCGA.AA.3693	4	52696791	91116155	11089	0.4388	SMALL-GAIN	NONFOCAL	198	Too-Many
TCGA.AA.3941	4	56780460	57948507	344	0.408	SMALL-GAIN	NONFOCAL	14	"AASDH,ARL9,CEP135,HOPX,IGFBP7,KIAA1211,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.A6.3808.01A	4	57842566	69337163	195	0.5484	SMALL-GAIN	NONFOCAL	16	"ADGRL3,CENPC,EPHA5,GNRHR,IGFBP7,NOA1,POLR2B,STAP1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,YTHDC1"
TCGA.AA.A00N.01A	4	68527849	69964242	112	0.5325	SMALL-GAIN	NONFOCAL	13	"GNRHR,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A3,UGT2B10,UGT2B15,UGT2B17,UGT2B7,YTHDC1"
TCGA.AZ.4684.01A	4	69416347	71250183	117	0.5367	SMALL-GAIN	NONFOCAL	24	"CABS1,CSN1S1,CSN2,CSN3,FDCSP,HTN1,HTN3,ODAM,PRR27,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7"
TCGA.AF.3911	4	70338324	71235300	319	0.4128	SMALL-GAIN	NONFOCAL	16	"CABS1,CSN1S1,CSN2,CSN3,FDCSP,HTN1,HTN3,ODAM,PRR27,SMR3A,STATH,SULT1B1,SULT1E1,UGT2A1,UGT2A2,UGT2B4"
TCGA.A6.3808.01A	4	70460832	71467094	84	0.5466	SMALL-GAIN	NONFOCAL	20	"AMBN,AMTN,CABS1,CSN1S1,CSN2,CSN3,FDCSP,HTN1,HTN3,MUC7,ODAM,PROL1,PRR27,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,UGT2A1,UGT2A2"
TCGA.DM.A28M.01A	4	70615387	71113485	53	0.5898	SMALL-GAIN	NONFOCAL	11	"CSN1S1,CSN2,CSN3,FDCSP,HTN1,HTN3,ODAM,PRR27,STATH,SULT1B1,SULT1E1"
TCGA.CK.5914.01A	4	70805724	71503432	72	0.4502	SMALL-GAIN	NONFOCAL	17	"AMBN,AMTN,CABS1,CSN1S1,CSN2,CSN3,ENAM,FDCSP,HTN1,HTN3,MUC7,ODAM,PROL1,PRR27,SMR3A,SMR3B,STATH"
TCGA.AF.3911	4	73625798	76232964	709	0.3854	SMALL-GAIN	NONFOCAL	21	"AFM,AFP,ALB,ANKRD17,AREG,BTC,COX18,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,EPGN,EREG,MTHFD2L,PARM1,PF4,PF4V1,PPBP,RASSF6"
TCGA.AA.3509.01A	4	73985838	76452152	139	0.585	SMALL-GAIN	NONFOCAL	22	"AFM,AFP,ALB,ANKRD17,AREG,BTC,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,EPGN,EREG,MTHFD2L,PARM1,PF4,PF4V1,PPBP,RASSF6,RCHY1,THAP6"
TCGA.A6.3808.01A	4	76809318	77651910	113	0.586	SMALL-GAIN	NONFOCAL	14	"ART3,CCDC158,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,NAAA,NUP54,PPEF2,SCARB2,SDAD1,SHROOM3,STBD1"
TCGA.A6.3808.01A	4	78815276	83294568	181	0.5573	SMALL-GAIN	NONFOCAL	15	"ANTXR2,ANXA3,BMP2K,BMP3,C4orf22,FGF5,FRAS1,GK2,HNRNPD,MRPL1,NAA11,PAQR3,PRDM8,PRKG2,RASGEF1B"
TCGA.AA.A010.01A	4	87695479	88583082	95	0.515	SMALL-GAIN	NONFOCAL	11	"AFF1,C4orf36,DMP1,DSPP,HSD17B11,HSD17B13,KLHL8,NUDT9,PTPN13,SLC10A6,SPARCL1"
TCGA.A6.3808.01A	4	89414146	99982301	225	0.4438	SMALL-GAIN	NONFOCAL	24	"ATOH1,BMPR1B,CCSER1,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HERC5,HPGDS,METAP1,MMRN1,NAP1L5,PDHA2,PDLIM5,PIGY,PYURF,RAP1GDS1,SMARCAD1,SNCA,STPG2,TIGD2,TSPAN5,UNC5C"
TCGA.AA.A00N.01A	4	89570943	99982301	216	0.6027	SMALL-GAIN	NONFOCAL	21	"ATOH1,BMPR1B,CCSER1,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HPGDS,METAP1,MMRN1,NAP1L5,PDHA2,PDLIM5,RAP1GDS1,SMARCAD1,SNCA,STPG2,TIGD2,TSPAN5,UNC5C"
TCGA.AA.3509.01A	4	89941589	108824339	569	0.4974	SMALL-GAIN	NONFOCAL	60	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ARHGEF38,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,CXXC4,DAPP1,DDIT4L,DKK2,DNAJB14,EIF4E,EMCN,FAM13A,GIMD1,GPRIN3,GRID2,GSTCD,H2AFZ,HPGDS,INTS12,LAMTOR3,MANBA,METAP1,MMRN1,MTTP,NFKB1,NPNT,PAPSS1,PDHA2,PDLIM5,PPA2,PPP3CA,RAP1GDS1,SGMS2,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,STPG2,TACR3,TBCK,TET2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AA.3693	4	91340821	185194212	25990	0.4173	SMALL-GAIN	NONFOCAL	281	Too-Many
TCGA.A6.3808.01A	4	103910930	110437636	273	0.5289	SMALL-GAIN	NONFOCAL	26	"AIMP1,ARHGEF38,BDH2,CENPE,COL25A1,CXXC4,CYP2U1,DKK2,ETNPPL,GIMD1,GSTCD,HADH,INTS12,LEF1,NPNT,OSTC,PAPSS1,PPA2,RPL34,SEC24B,SGMS2,SLC9B1,SLC9B2,TACR3,TBCK,TET2"
TCGA.AA.3679	4	112810399	133686432	5421	0.3896	SMALL-GAIN	NONFOCAL	56	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf32,C4orf33,CAMK2D,CCNA2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,LARP7,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PDE5A,PGRMC2,PLK4,PRDM5,PRSS12,QRFPR,SCLT1,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AA.A00N.01A	4	113507554	121698289	236	0.6446	SMALL-GAIN	NONFOCAL	20	"ANK2,ARSJ,C4orf3,CAMK2D,FABP2,LARP7,MAD2L1,METTL14,MYOZ2,NDST3,NDST4,PDE5A,PRDM5,PRSS12,SEC24D,SYNPO2,TRAM1L1,UGT8,USP53,ZGRF1"
TCGA.AA.3509.01A	4	114473123	120423687	120	0.4251	SMALL-GAIN	NONFOCAL	15	"ARSJ,C4orf3,CAMK2D,FABP2,METTL14,MYOZ2,NDST3,NDST4,PDE5A,PRSS12,SEC24D,SYNPO2,TRAM1L1,UGT8,USP53"
TCGA.AA.3509.01A	4	123533842	128814428	106	0.3877	SMALL-GAIN	NONFOCAL	12	"ANKRD50,BBS12,FAT4,FGF2,HSPA4L,IL21,INTU,NUDT6,PLK4,SLC25A31,SPATA5,SPRY1"
TCGA.AA.3679	4	134105003	140598329	1633	0.3874	SMALL-GAIN	NONFOCAL	12	"CCRN4L,ELF2,MGARP,MGST2,NAA15,NDUFC1,PABPC4L,PCDH10,PCDH18,RAB33B,SETD7,SLC7A11"
TCGA.AA.3679	4	140601790	156169942	4222	0.401	SMALL-GAIN	NONFOCAL	63	"ABCE1,ANAPC10,ARFIP1,ARHGAP10,C4orf51,CLGN,DCHS2,DCLK2,EDNRA,ELMOD2,FAM160A1,FBXW7,FGA,FGB,FGG,FHDC1,FREM3,GAB1,GATB,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,KIAA0922,LRAT,LRBA,LSM6,MAB21L2,MAML3,MGAT4D,MGST2,MMAA,MND1,NPY2R,NR3C2,OTUD4,PLRG1,POU4F2,PRMT9,PRSS48,RBM46,RNF150,RNF175,RPS3A,SCOC,SFRP2,SH3D19,SLC10A7,SMAD1,SMARCA5,TBC1D9,TIGD4,TLR2,TMEM154,TMEM184C,TRIM2,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AA.A00N.01A	4	147177566	153600952	223	0.4544	SMALL-GAIN	NONFOCAL	18	"ARHGAP10,DCLK2,EDNRA,FAM160A1,FBXW7,GATB,LRBA,MAB21L2,NR3C2,POU4F2,PRMT9,PRSS48,RPS3A,SH3D19,SLC10A7,TMEM154,TMEM184C,TTC29"
TCGA.AA.A01R	4	151840751	168520791	4832	0.6493	SMALL-GAIN	NONFOCAL	61	"ANP32C,APELA,ARFIP1,ASIC5,C4orf45,C4orf46,CPE,CTSO,DCHS2,ETFDH,FAM160A1,FAM198B,FAM218A,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FSTL5,GATB,GLRB,GRIA2,GUCY1A3,GUCY1B3,KIAA0922,KLHL2,LRAT,LRBA,MAP9,MARCH1,MND1,MSMO1,NAF1,NPY1R,NPY2R,NPY5R,PDGFC,PLRG1,PPID,PRSS48,RAPGEF2,RBM46,RNF175,RPS3A,RXFP1,SFRP2,SH3D19,SPOCK3,TDO2,TIGD4,TKTL2,TLL1,TLR2,TMA16,TMEM144,TMEM154,TMEM192,TRIM2,TRIM60,TRIM61"
TCGA.AA.3982	4	153267967	154743503	438	0.4077	SMALL-GAIN	NONFOCAL	11	"ARFIP1,FBXW7,FHDC1,KIAA0922,MND1,RNF175,SFRP2,TIGD4,TLR2,TMEM154,TRIM2"
TCGA.AA.A00N.01A	4	156268888	164050122	208	0.3808	SMALL-GAIN	NONFOCAL	20	"ASIC5,C4orf45,C4orf46,CTSO,ETFDH,FAM198B,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,MAP9,NAF1,PDGFC,PPID,RAPGEF2,RXFP1,TDO2,TMEM144"
TCGA.AA.3941	4	183729136	186467809	929	0.42	SMALL-GAIN	NONFOCAL	25	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,DCTD,ENPP6,HELT,ING2,IRF2,LRP2BP,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,STOX2,TRAPPC11,UFSP2,WWC2"
TCGA.AA.3693	4	185586334	190921708	1753	0.4595	SMALL-GAIN	NONFOCAL	25	"ACSL1,ANKRD37,C4orf47,CCDC110,CENPU,CFAP97,CYP4V2,F11,FAM149A,FAT1,FRG1,HELT,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.3556	5	51454	1236689	198	0.4541	SMALL-GAIN	NONFOCAL	17	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC9A3,TPPP,TRIP13,ZDHHC11"
TCGA.DM.A28K	5	51454	9915398	4648	0.4683	SMALL-GAIN	NONFOCAL	40	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CEP72,CLPTM1L,EXOC3,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3867	5	51454	11747765	5566	0.5891	SMALL-GAIN	NONFOCAL	48	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.G4.6307	5	51454	34654476	12207	0.4683	SMALL-GAIN	NONFOCAL	79	"ADAMTS12,ADAMTS16,ADCY2,AHRR,AMACR,ANKH,ANKRD33B,BASP1,BRD9,C1QTNF3,C5orf22,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,DROSHA,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GOLPH3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTMR12,MTRR,MYO10,NDUFS6,NKD2,NPR3,NSUN2,OTULIN,PAPD7,PDCD6,PDZD2,PLEKHG4B,PRDM9,ROPN1L,RXFP3,SDHA,SEMA5A,SLC12A7,SLC45A2,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,SUB1,TARS,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZFR,ZNF622"
TCGA.AA.3560	5	51454	43251389	14947	0.4076	SMALL-GAIN	NONFOCAL	127	Too-Many
TCGA.A6.4107	5	51454	45939673	15287	0.524	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.AA.3842	5	51454	46099779	15282	0.5801	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.AA.3685	5	51454	46383334	15307	0.4363	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.AF.3911	5	51454	46383334	15302	0.5651	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.F5.6863	5	51454	46383334	15258	0.3912	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.QG.A5Z1	5	51454	46383334	15175	0.4777	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.AM.5821	5	51454	49560858	15268	0.387	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.AA.3856	5	51454	49564797	15308	0.6542	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.CK.5912	5	51454	50254392	15372	0.4657	SMALL-GAIN	NONFOCAL	138	Too-Many
TCGA.AA.3688	5	51454	52344609	16010	0.4799	SMALL-GAIN	NONFOCAL	142	Too-Many
TCGA.AY.6196	5	51454	55971868	17105	0.4371	SMALL-GAIN	NONFOCAL	164	Too-Many
TCGA.AD.A5EK	5	51454	180692832	55163	0.4717	SMALL-GAIN	NONFOCAL	849	Too-Many
TCGA.AG.3885	5	51454	180692832	55496	0.5089	SMALL-GAIN	NONFOCAL	849	Too-Many
TCGA.AZ.6598	5	51454	180692832	55506	0.4872	SMALL-GAIN	NONFOCAL	849	Too-Many
TCGA.AH.6549.01A	5	140393	1079474	150	0.6525	SMALL-GAIN	NONFOCAL	15	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC9A3,TPPP,TRIP13,ZDHHC11"
TCGA.AG.A032.01A	5	143111	871562	65	0.517	SMALL-GAIN	NONFOCAL	12	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP,ZDHHC11"
TCGA.AG.A01L.01A	5	240426	1403010	118	0.3943	SMALL-GAIN	NONFOCAL	17	"AHRR,BRD9,CEP72,CLPTM1L,EXOC3,NKD2,PDCD6,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.A015.01A	5	442570	1282496	81	0.477	SMALL-GAIN	NONFOCAL	12	"BRD9,CEP72,EXOC3,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AG.4008	5	863796	2485819	577	0.4104	SMALL-GAIN	NONFOCAL	13	"BRD9,CLPTM1L,IRX4,LPCAT1,MRPL36,NDUFS6,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC6A3,TERT,TRIP13"
TCGA.AH.6549.01A	5	1213530	45645277	1516	0.6216	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.DM.A28K	5	9922902	44054930	10363	0.4807	SMALL-GAIN	NONFOCAL	93	"ADAMTS12,AGXT2,AMACR,ANKH,ANKRD33B,ANXA2R,BASP1,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CMBL,CTNND2,DAB2,DAP,DNAH5,DNAJC21,DROSHA,EGFLAM,FAM105A,FAM134B,FAM173B,FBXL7,FBXO4,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HMGCS1,IL7R,LIFR,LMBRD2,MARCH11,MARCH6,MROH2B,MTMR12,MYO10,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OTULIN,OXCT1,PAIP1,PDZD2,PLCXD3,PRDM9,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,ROPN1L,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TRIO,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131,ZNF622"
TCGA.AA.3867	5	11850758	18054105	1914	0.5947	SMALL-GAIN	NONFOCAL	12	"ANKH,BASP1,CTNND2,DNAH5,FAM105A,FAM134B,FBXL7,MARCH11,MYO10,OTULIN,TRIO,ZNF622"
TCGA.AG.A026	5	20470312	46383334	7103	0.4265	SMALL-GAIN	NONFOCAL	77	"ADAMTS12,AGXT2,AMACR,ANXA2R,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH10,CDH12,CDH18,CDH6,CDH9,DAB2,DNAJC21,DROSHA,EGFLAM,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HCN1,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,MRPS30,MTMR12,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PDZD2,PLCXD3,PRDM9,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131"
TCGA.AG.A032.01A	5	23517927	180686963	6844	0.4462	SMALL-GAIN	NONFOCAL	788	Too-Many
TCGA.G4.6626	5	23728380	123452758	27694	0.4291	SMALL-GAIN	NONFOCAL	331	Too-Many
TCGA.AG.A02N	5	27717179	34176642	2155	0.4854	SMALL-GAIN	NONFOCAL	15	"ADAMTS12,AMACR,C1QTNF3,C5orf22,CDH6,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,RXFP3,SLC45A2,SUB1,TARS,ZFR"
TCGA.AA.3867	5	30907804	36171932	1988	0.6292	SMALL-GAIN	NONFOCAL	29	"ADAMTS12,AGXT2,AMACR,BRIX1,C1QTNF3,C5orf22,CAPSL,CDH6,DNAJC21,DROSHA,GOLPH3,IL7R,LMBRD2,MTMR12,NPR3,PDZD2,PRLR,RAD1,RAI14,RXFP3,SKP2,SLC45A2,SPEF2,SUB1,TARS,TTC23L,UGT3A1,UGT3A2,ZFR"
TCGA.AA.3966	5	32332179	43904288	3635	0.6574	SMALL-GAIN	NONFOCAL	63	"ADAMTS12,AGXT2,AMACR,ANXA2R,BRIX1,C1QTNF3,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,DAB2,DNAJC21,EGFLAM,FBXO4,FYB,GDNF,GDNF-AS1,GHR,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131"
TCGA.AG.A02N	5	34266679	43904288	2986	0.5236	SMALL-GAIN	NONFOCAL	54	"AGXT2,ANXA2R,BRIX1,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,DAB2,DNAJC21,EGFLAM,FBXO4,FYB,GDNF,GDNF-AS1,GHR,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,NADK2,NIM1K,NIPBL,NNT,NUP155,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,SEPP1,SKP2,SLC1A3,SPEF2,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZNF131"
TCGA.AA.3509.01A	5	35667127	36962173	121	0.4283	SMALL-GAIN	NONFOCAL	11	"CAPSL,IL7R,LMBRD2,NADK2,NIPBL,RANBP3L,SKP2,SLC1A3,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.A00N.01A	5	37318041	40681064	178	0.3855	SMALL-GAIN	NONFOCAL	12	"C9,DAB2,EGFLAM,FYB,GDNF,GDNF-AS1,LIFR,NUP155,OSMR,PTGER4,RICTOR,WDR70"
TCGA.AA.3867	5	37347485	45905996	2191	0.5393	SMALL-GAIN	NONFOCAL	38	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,EGFLAM,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,HCN1,HMGCS1,LIFR,MROH2B,MRPS30,NIM1K,NNT,NUP155,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,SEPP1,TTC33,WDR70,ZNF131"
TCGA.AA.A02E.01A	5	38493661	49695019	331	0.5533	SMALL-GAIN	NONFOCAL	34	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,EMB,FBXO4,FGF10,FYB,GHR,HCN1,HMGCS1,LIFR,MROH2B,MRPS30,NIM1K,NNT,OSMR,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RICTOR,RPL37,SEPP1,TTC33,ZNF131"
TCGA.CM.4752	5	39349895	43544591	1162	0.4469	SMALL-GAIN	NONFOCAL	25	"ANXA2R,C5orf28,C5orf34,C5orf51,C6,C7,C9,CARD6,CCDC152,CCL28,DAB2,FBXO4,GHR,HMGCS1,MROH2B,NIM1K,OXCT1,PAIP1,PLCXD3,PRKAA1,PTGER4,RPL37,SEPP1,TTC33,ZNF131"
TCGA.AY.5543	5	49560858	173640196	37897	0.389	SMALL-GAIN	NONFOCAL	623	Too-Many
TCGA.AZ.6603	5	51101047	54948732	1312	0.4098	SMALL-GAIN	NONFOCAL	20	"ARL15,CCNO,CDC20B,DHX29,ESM1,FST,GPX8,GZMA,GZMK,HSPB3,ITGA1,ITGA2,MCIDAS,MOCS2,NDUFS4,PELO,PPAP2A,SKIV2L2,SLC38A9,SNX18"
TCGA.AZ.6603	5	55229576	58353152	1196	0.3879	SMALL-GAIN	NONFOCAL	12	"ACTBL2,ANKRD55,C5orf67,GAPT,GPBP1,IL6ST,MAP3K1,MIER3,PDE4D,PLK2,RAB3C,SETD9"
TCGA.AA.A00N.01A	5	57755489	61681302	98	0.4344	SMALL-GAIN	NONFOCAL	12	"C5orf64,DEPDC1B,ELOVL7,ERCC8,GAPT,KIF2A,NDUFAF2,PDE4D,PLK2,RAB3C,SMIM15,ZSWIM6"
TCGA.AA.A00N.01A	5	63620966	64981147	101	0.6214	SMALL-GAIN	NONFOCAL	11	"ADAMTS6,CENPK,CWC27,FAM159B,PPWD1,RGS7BP,RNF180,SGTB,SREK1IP1,TRAPPC13,TRIM23"
TCGA.AA.3850	5	68245919	70680127	95	0.38355	SMALL-GAIN	NONFOCAL	19	"AK6,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MRPS36,NAIP,OCLN,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.EI.7002	5	73324339	77396399	1487	0.5639	SMALL-GAIN	NONFOCAL	26	"AGGF1,ANKDD1B,ANKRD31,AP3B1,COL4A3BP,CRHBP,ENC1,F2R,F2RL1,F2RL2,FAM169A,GCNT4,GFM2,HEXB,HMGCR,IQGAP2,NSA2,OTP,PDE8B,POC5,POLK,S100Z,SV2C,TBCA,WDR41,ZBED3"
TCGA.AA.3844	5	75931984	81835069	1762	0.4761	SMALL-GAIN	NONFOCAL	40	"ACOT12,AGGF1,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CKMT2,CMYA5,CRHBP,DHFR,DMGDH,F2R,F2RL1,FAM151B,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,TBCA,THBS4,WDR41,ZBED3,ZCCHC9,ZFYVE16"
TCGA.EI.7002	5	77797645	110482489	8243	0.5624	SMALL-GAIN	NONFOCAL	85	"ACOT12,ADGRV1,ANKRD32,ANKRD34B,ARRDC3,ARSB,ARSK,ATG10,ATP6AP1L,BHMT,BHMT2,C5orf30,CAST,CCNH,CETN3,CHD1,CKMT2,CMYA5,COX7C,DHFR,DMGDH,EDIL3,EFNA5,ELL2,ERAP1,ERAP2,FAM151B,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,HAPLN1,HOMER1,JMY,KIAA0825,LHFPL2,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCTP1,MEF2C,MSH3,MTRNR2L2,MTX3,NR2F1,NUDT12,PAM,PAPD4,PCSK1,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,RASGRF2,RFESD,RGMB,RHOBTB3,RIOK2,RPS23,SERINC5,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SPZ1,SSBP2,ST8SIA4,THBS4,TMEM161B,TMEM167A,TMEM232,TSLP,TTC37,VCAN,WDR36,XRCC4,ZCCHC9,ZFYVE16"
TCGA.RU.A8FL	5	77841391	80491099	800	0.5248	SMALL-GAIN	NONFOCAL	20	"ANKRD34B,ARSB,BHMT,BHMT2,CMYA5,DHFR,DMGDH,FAM151B,HOMER1,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,PAPD4,RASGRF2,SERINC5,SPZ1,THBS4,ZFYVE16"
TCGA.A6.3808.01A	5	82948221	93859597	213	0.5093	SMALL-GAIN	NONFOCAL	17	"ADGRV1,ARRDC3,CCNH,CETN3,COX7C,EDIL3,FAM172A,HAPLN1,KIAA0825,LYSMD3,MBLAC2,MEF2C,NR2F1,POLR3G,POU5F2,RASA1,TMEM161B"
TCGA.AA.3509.01A	5	86669983	110432730	646	0.4541	SMALL-GAIN	NONFOCAL	52	"ADGRV1,ANKRD32,ARRDC3,ARSK,C5orf30,CAST,CCNH,CETN3,CHD1,EFNA5,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCTP1,MEF2C,NR2F1,NUDT12,PAM,PCSK1,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,RFESD,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TMEM161B,TMEM232,TSLP,TTC37,WDR36"
TCGA.A6.3808.01A	5	94001544	121739426	793	0.3927	SMALL-GAIN	NONFOCAL	76	"ANKRD32,AP3S1,APC,ARL14EPL,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CHD1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM174A,FAM81B,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,HSD17B4,KCNN2,LIX1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MCC,MCTP1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,PPIP5K2,PRR16,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2,ZNF474"
TCGA.AA.3994	5	109727338	117306325	2888	0.4259	SMALL-GAIN	NONFOCAL	30	"AP3S1,APC,ARL14EPL,ATG12,CAMK4,CCDC112,CDO1,COMMD10,DCP2,EPB41L4A,FEM1C,KCNN2,LVRN,MCC,NREP,PGGT1B,REEP5,SEMA6A,SLC25A46,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.3509.01A	5	112850914	125824442	322	0.3809	SMALL-GAIN	NONFOCAL	36	"AP3S1,ARL14EPL,ATG12,CCDC112,CDO1,CEP120,COMMD10,CSNK1G3,DMXL1,DTWD2,FAM170A,FEM1C,FTMT,GRAMD3,HSD17B4,KCNN2,LOC100505841,LOX,LVRN,PGGT1B,PPIC,PRDM6,PRR16,SEMA6A,SNCAIP,SNX2,SNX24,SRFBP1,TICAM2,TMED7,TMED7-TICAM2,TNFAIP8,TRIM36,YTHDC2,ZNF474,ZNF608"
TCGA.AA.3994	5	118134049	147114442	8611	0.4382	SMALL-GAIN	NONFOCAL	239	Too-Many
TCGA.AZ.4684.01A	5	126250622	129519900	160	0.3851	SMALL-GAIN	NONFOCAL	12	"ADAMTS19,C5orf63,CHSY3,CTXN3,FBN2,ISOC1,KIAA1024L,MARCH3,MEGF10,PRRC1,SLC12A2,SLC27A6"
TCGA.AA.3509.01A	5	126253628	129519900	159	0.4565	SMALL-GAIN	NONFOCAL	12	"ADAMTS19,C5orf63,CHSY3,CTXN3,FBN2,ISOC1,KIAA1024L,MARCH3,MEGF10,PRRC1,SLC12A2,SLC27A6"
TCGA.CM.4747	5	127347429	180692832	17552	0.5126	SMALL-GAIN	NONFOCAL	445	Too-Many
TCGA.AA.3844	5	131965178	132944711	326	0.5868	SMALL-GAIN	NONFOCAL	15	"AFF4,CCNI2,FSTL4,GDF9,HSPA4,IL13,IL4,KIF3A,LEAP2,RAD50,SEPT8,SHROOM1,SOWAHA,UQCRQ,ZCCHC10"
TCGA.AA.3844	5	132998707	135455742	911	0.5912	SMALL-GAIN	NONFOCAL	29	"C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CDKL3,CDKN2AIPNL,CXCL14,DCANP1,DDX46,FBXL21,H2AFY,IL9,JADE2,LECT2,NEUROG1,PCBD2,PITX1,PPP2CA,SAR1B,SEC24A,SKP1,SLC25A48,TCF7,TGFBI,TIFAB,TXNDC15,UBE2B,VDAC1"
TCGA.AA.A02K.01A	5	134106541	140723580	692	0.4144	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.AA.A010.01A	5	134782022	137735497	223	0.4044	SMALL-GAIN	NONFOCAL	26	"BRD8,CDC23,CDC25C,CXCL14,DCANP1,FAM13B,FAM53C,FBXL21,GFRA3,HNRNPA0,IL9,KDM3B,KIF20A,KLHL3,LECT2,MYOT,NEUROG1,NME5,PKD2L2,SLC25A48,SMAD5,SPOCK1,TGFBI,TIFAB,TRPC7,WNT8A"
TCGA.AA.3844	5	137337428	139295820	287	0.6544	SMALL-GAIN	NONFOCAL	30	"BRD8,CDC23,CDC25C,CTNNA1,CXXC5,DNAJC18,ECSCR,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,LRRTM2,MATR3,MZB1,NME5,NRG2,PAIP2,PROB1,PSD2,REEP2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2,WNT8A"
TCGA.AA.3941	5	137341909	139379706	301	0.4151	SMALL-GAIN	NONFOCAL	30	"BRD8,CDC23,CDC25C,CTNNA1,CXXC5,DNAJC18,ECSCR,EGR1,ETF1,FAM13B,FAM53C,GFRA3,HSPA9,KDM3B,KIF20A,LRRTM2,MATR3,MZB1,NME5,NRG2,PAIP2,PROB1,PSD2,REEP2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2,WNT8A"
TCGA.AA.3862.01A	5	137595206	141033479	560	0.567	SMALL-GAIN	NONFOCAL	105	Too-Many
TCGA.AA.3941	5	139457455	140081162	87	0.3888	SMALL-GAIN	NONFOCAL	21	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,CYSTM1,DND1,EIF4EBP3,HARS,HARS2,HBEGF,IGIP,IK,NDUFA2,PFDN1,PURA,SLC35A4,SLC4A9,SRA1,TMCO6,WDR55,ZMAT2"
TCGA.AA.3844	5	139471722	140117518	88	0.6672	SMALL-GAIN	NONFOCAL	21	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,CYSTM1,DND1,EIF4EBP3,HARS,HARS2,HBEGF,IGIP,IK,NDUFA2,PFDN1,PURA,SLC35A4,SLC4A9,SRA1,TMCO6,WDR55,ZMAT2"
TCGA.AA.3844	5	140691909	142581174	747	0.5733	SMALL-GAIN	NONFOCAL	37	"ARAP3,ARHGAP26,DIAPH1,FCHSD1,FGF1,GNPDA1,HDAC3,KIAA0141,NDFIP1,PCDH1,PCDH12,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,RNF14,SPRY4,TAF7"
TCGA.AG.A01W.01A	5	140763837	140792531	14	0.3935	SMALL-GAIN	NONFOCAL	15	"PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6"
TCGA.A6.3808.01A	5	140855736	145510528	208	0.3869	SMALL-GAIN	NONFOCAL	45	"ARAP3,ARHGAP26,DIAPH1,FCHSD1,FGF1,GNPDA1,GRXCR2,HDAC3,HMHB1,KCTD16,KIAA0141,LARS,NDFIP1,NR3C1,PCDH1,PCDH12,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,PLAC8L1,PRELID2,RELL2,RNF14,SH3RF2,SPRY4,YIPF5"
TCGA.AG.3909.01A	5	141511340	145561952	104	0.3841	SMALL-GAIN	NONFOCAL	13	"ARHGAP26,FGF1,GRXCR2,HMHB1,KCTD16,LARS,NDFIP1,NR3C1,PLAC8L1,PRELID2,SH3RF2,SPRY4,YIPF5"
TCGA.AG.3909.01A	5	145878052	147929692	160	0.4179	SMALL-GAIN	NONFOCAL	17	"C5orf46,DPYSL3,FBXO38,GPR151,HTR4,JAKMIP2,PPP2R2B,SCGB3A2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1"
TCGA.AF.6672	5	146626664	180692832	12036	0.4701	SMALL-GAIN	NONFOCAL	238	Too-Many
TCGA.AA.A01Z	5	148599263	150157485	553	0.5484	SMALL-GAIN	NONFOCAL	26	"ABLIM3,AFAP1L1,ARHGEF37,ARSI,CAMK2A,CD74,CDX1,CSF1R,CSNK1A1,DCTN4,GRPEL2,HMGXB3,IL17B,MYOZ3,NDST1,PCYOX1L,PDE6A,PDGFRB,PPARGC1B,RBM22,RPS14,SLC26A2,SLC6A7,SYNPO,TCOF1,TIGD6"
TCGA.DC.4745	5	149003850	180692832	11168	0.4618	SMALL-GAIN	NONFOCAL	216	Too-Many
TCGA.AA.3850	5	149399295	150260333	269	0.42335	SMALL-GAIN	NONFOCAL	17	"ARSI,CAMK2A,CD74,CDX1,CSF1R,DCTN4,HMGXB3,IRGM,MYOZ3,NDST1,PDGFRB,RBM22,RPS14,SLC6A7,SMIM3,SYNPO,TCOF1"
TCGA.AA.3982	5	149430914	150058784	214	0.5139	SMALL-GAIN	NONFOCAL	13	"ARSI,CAMK2A,CD74,CDX1,CSF1R,HMGXB3,MYOZ3,NDST1,PDGFRB,RPS14,SLC6A7,SYNPO,TCOF1"
TCGA.A6.3808.01A	5	149781732	158585666	491	0.3828	SMALL-GAIN	NONFOCAL	55	"ADAM19,ANXA6,ATOX1,C5orf52,CCDC69,CD74,CLINT1,CNOT8,CYFIP2,DCTN4,EBF1,FAM114A2,FAM71B,FAT2,FAXDC2,FNDC9,G3BP1,GALNT10,GEMIN5,GLRA1,GM2A,GPX3,GRIA1,HAND1,HAVCR1,HAVCR2,IRGM,ITK,KIF4B,LARP1,LOC100652758,LSM11,MED7,MFAP3,MRPL22,MYOZ3,NDST1,NIPAL4,NMUR2,RBM22,RNF145,RPS14,SAP30L,SGCD,SLC36A1,SLC36A2,SLC36A3,SMIM3,SOX30,SPARC,SYNPO,THG1L,TIMD4,TNIP1,ZNF300"
TCGA.AA.A00N.01A	5	150079936	150922828	131	0.4615	SMALL-GAIN	NONFOCAL	14	"ANXA6,CCDC69,DCTN4,FAT2,GM2A,GPX3,IRGM,RBM22,SLC36A1,SLC36A2,SLC36A3,SMIM3,TNIP1,ZNF300"
TCGA.CK.5914.01A	5	150512603	153026449	115	0.4133	SMALL-GAIN	NONFOCAL	14	"ANXA6,ATOX1,CCDC69,FAT2,G3BP1,GLRA1,GM2A,GRIA1,LOC100652758,NMUR2,SLC36A1,SLC36A2,SLC36A3,SPARC"
TCGA.AG.A020	5	153518765	156398252	982	0.487	SMALL-GAIN	NONFOCAL	11	"CNOT8,FAXDC2,GALNT10,GEMIN5,HAND1,KIF4B,LARP1,MRPL22,SAP30L,SGCD,TIMD4"
TCGA.AA.A010.01A	5	158695877	167922283	210	0.5113	SMALL-GAIN	NONFOCAL	23	"ADRA1B,ATP10B,C1QTNF2,CCNG1,CCNJL,FABP6,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,IL12B,MAT2B,NUDCD2,PTTG1,PWWP2A,RARS,SLU7,TENM2,TTC1,UBLCP1,WWC1,ZBED8"
TCGA.BM.6198	5	159691890	163797229	1365	0.43255	SMALL-GAIN	NONFOCAL	14	"ATP10B,C1QTNF2,CCNG1,CCNJL,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,MAT2B,NUDCD2,PTTG1,SLU7,ZBED8"
TCGA.AA.3509.01A	5	159797481	162918048	102	0.4903	SMALL-GAIN	NONFOCAL	12	"ATP10B,C1QTNF2,CCNG1,GABRA1,GABRA6,GABRB2,GABRG2,HMMR,NUDCD2,PTTG1,SLU7,ZBED8"
TCGA.AA.3844	5	167801104	170316915	1282	0.4409	SMALL-GAIN	NONFOCAL	14	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,PANK3,RANBP17,RARS,SLIT3,SPDL1,WWC1"
TCGA.AA.3664	5	168378391	180692832	4259	0.3933	SMALL-GAIN	NONFOCAL	124	Too-Many
TCGA.AA.3844	5	170695151	173683913	1222	0.6008	SMALL-GAIN	NONFOCAL	24	"ATP6V0E1,BNIP1,BOD1,C5orf47,CPEB4,CREBRF,DUSP1,EFCAB9,ERGIC1,FBXW11,FGF18,HMP19,LOC101928093,NEURL1B,NKX2-5,NPM1,RANBP17,RPL26L1,SH3PXD2B,SMIM23,STC2,STK10,TLX3,UBTD2"
TCGA.AA.3844	5	173703387	180145206	1799	0.5838	SMALL-GAIN	NONFOCAL	78	"ADAMTS2,ARL10,B4GALT7,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT4B,MSX2,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3941	5	174756702	180692832	1467	0.3862	SMALL-GAIN	NONFOCAL	89	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,HRH2,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SFXN1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,THOC3,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A00Z.01A	5	175957546	180486290	32	0.4788	SMALL-GAIN	NONFOCAL	70	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GPRIN1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3605.01A	5	175957546	180486290	31	0.4838	SMALL-GAIN	NONFOCAL	70	"ADAMTS2,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GPRIN1,GRK6,GRM6,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NSD1,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3517	5	178097753	180692832	740	0.462	SMALL-GAIN	NONFOCAL	38	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,GNB2L1,GRM6,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2V1,OR2V2,OR2Y1,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.3982	5	178887381	180118719	313	0.5122	SMALL-GAIN	NONFOCAL	18	"C5orf45,C5orf60,CANX,CBY3,CNOT6,FLT4,GFPT2,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT4B,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B"
TCGA.CM.5344	5	179038307	179768397	198	0.3913	SMALL-GAIN	NONFOCAL	14	"C5orf45,C5orf60,CANX,CBY3,GFPT2,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT4B,RASGEF1C,RNF130,SQSTM1,TBC1D9B"
TCGA.AA.3844	5	180165366	180692832	147	0.6212	SMALL-GAIN	NONFOCAL	12	"BTNL3,BTNL8,BTNL9,GNB2L1,MGAT1,OR2V1,OR2V2,OR2Y1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AA.3982	5	180165366	180692832	145	0.5054	SMALL-GAIN	NONFOCAL	12	"BTNL3,BTNL8,BTNL9,GNB2L1,MGAT1,OR2V1,OR2V2,OR2Y1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AA.3982	6	203844	5307507	2425	0.3901	SMALL-GAIN	NONFOCAL	31	"BPHL,C6orf201,CDYL,DUSP22,ECI2,EXOC2,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LYRM4,MYLK4,NQO2,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.A01R	6	203844	6542264	3119	0.3858	SMALL-GAIN	NONFOCAL	33	"BPHL,C6orf201,CDYL,DUSP22,ECI2,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIPK1,RPP40,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.AA.3679	6	203844	29850273	11989	0.3872	SMALL-GAIN	NONFOCAL	223	Too-Many
TCGA.DM.A28F	6	203844	35967771	14026	0.5594	SMALL-GAIN	NONFOCAL	403	Too-Many
TCGA.CA.6719	6	203844	57226181	20845	0.4685	SMALL-GAIN	NONFOCAL	591	Too-Many
TCGA.G4.6297	6	203844	57666387	20965	0.3916	SMALL-GAIN	NONFOCAL	591	Too-Many
TCGA.AG.3602	6	203844	62112599	21014	0.4956	SMALL-GAIN	NONFOCAL	591	Too-Many
TCGA.AA.3697	6	203844	69736776	23076	0.3929	SMALL-GAIN	NONFOCAL	599	Too-Many
TCGA.DM.A288	6	203844	121775329	38029	0.5058	SMALL-GAIN	NONFOCAL	792	Too-Many
TCGA.DM.A1DA	6	203844	162933252	51750	0.3935	SMALL-GAIN	NONFOCAL	976	Too-Many
TCGA.AA.3534	6	203844	170918030	55019	0.4681	SMALL-GAIN	NONFOCAL	1010	Too-Many
TCGA.DC.6154	6	203844	170918030	54906	0.4032	SMALL-GAIN	NONFOCAL	1010	Too-Many
TCGA.CK.4952.01A	6	237464	31430816	1568	0.4659	SMALL-GAIN	NONFOCAL	267	Too-Many
TCGA.AA.A01R	6	6543516	12770822	2657	0.6664	SMALL-GAIN	NONFOCAL	30	"ADTRP,BLOC1S5,BMP6,C6orf52,CAGE1,DSP,EDN1,EEF1E1,ELOVL2,ERVFRD-1,GCM2,GCNT2,HIVEP1,LY86,MAK,NEDD9,PAK1IP1,PHACTR1,RIOK1,RREB1,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TXNDC5"
TCGA.AA.A01R	6	13264112	16701333	1416	0.3966	SMALL-GAIN	NONFOCAL	15	"ATXN1,CD83,DTNBP1,GFOD1,GMPR,JARID2,LOC100130357,MCUR1,MYLIP,NOL7,PHACTR1,RANBP9,RNF182,SIRT5,TBC1D7"
TCGA.AA.3982	6	17081415	18397129	370	0.4392	SMALL-GAIN	NONFOCAL	11	"CAP2,DEK,FAM8A1,KDM1B,KIF13A,NHLRC1,NUP153,RBM24,RNF144B,STMND1,TPMT"
TCGA.AA.3850	6	24370357	24919114	204	0.40205	SMALL-GAIN	NONFOCAL	11	"ACOT13,ALDH5A1,C6orf229,C6orf62,DCDC2,FAM65B,GMNN,GPLD1,KIAA0319,MRS2,TDP2"
TCGA.DY.A1DG	6	25571425	33024498	2497	0.5605	SMALL-GAIN	NONFOCAL	238	Too-Many
TCGA.AA.3982	6	25892528	26825467	236	0.3822	SMALL-GAIN	NONFOCAL	44	"ABT1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HMGN4,SLC17A2,TRIM38,ZNF322"
TCGA.AA.A01Q.01A	6	25914741	26388210	60	0.557	SMALL-GAIN	NONFOCAL	37	"BTN2A2,BTN3A2,HFE,HIST1H1A,HIST1H1C,HIST1H1D,HIST1H1E,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BB,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,SLC17A2,TRIM38"
TCGA.CM.5341	6	26162678	28341876	464	0.4268	SMALL-GAIN	NONFOCAL	64	"ABT1,BTN1A1,BTN2A1,BTN2A2,BTN3A1,BTN3A2,BTN3A3,HIST1H1B,HIST1H1D,HIST1H2AD,HIST1H2AE,HIST1H2AG,HIST1H2AH,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H2BI,HIST1H2BJ,HIST1H2BK,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4D,HIST1H4E,HIST1H4F,HIST1H4G,HIST1H4H,HIST1H4I,HIST1H4J,HIST1H4K,HIST1H4L,HMGN4,NKAPL,OR2B2,OR2B6,PGBD1,POM121L2,PRSS16,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZNF184,ZNF322,ZNF391,ZSCAN16,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.AG.3592	6	27090403	31446795	1513	0.6024	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AA.3688	6	27586121	28602271	234	0.4119	SMALL-GAIN	NONFOCAL	33	"GPX5,GPX6,HIST1H1B,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4J,HIST1H4K,HIST1H4L,NKAPL,OR2B2,OR2B6,PGBD1,ZBED9,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.DC.6682	6	27586121	39964398	4217	0.4128	SMALL-GAIN	NONFOCAL	272	Too-Many
TCGA.AF.3914.01A	6	27782180	28403614	59	0.4222	SMALL-GAIN	NONFOCAL	27	"HIST1H1B,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3I,HIST1H3J,HIST1H4J,HIST1H4K,HIST1H4L,NKAPL,OR2B2,OR2B6,PGBD1,ZKSCAN3,ZKSCAN4,ZKSCAN8,ZNF165,ZSCAN12,ZSCAN16,ZSCAN23,ZSCAN26,ZSCAN31,ZSCAN9"
TCGA.G4.6294	6	28243041	64315209	10102	0.4128	SMALL-GAIN	NONFOCAL	403	Too-Many
TCGA.A6.A56B	6	28364792	72945491	12538	0.5561	SMALL-GAIN	NONFOCAL	412	Too-Many
TCGA.AA.A01R	6	28782448	29645612	243	0.387	SMALL-GAIN	NONFOCAL	19	"GABBR1,MAS1L,MOG,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2H2,OR2J2,OR2J3,OR2W1,OR5V1,TRIM27,UBD,ZFP57,ZNF311"
TCGA.CM.5341	6	28923979	30044387	469	0.4666	SMALL-GAIN	NONFOCAL	25	"GABBR1,HLA-A,HLA-F,HLA-G,LOC554223,MAS1L,MOG,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2H1,OR2H2,OR2J2,OR2J3,OR2W1,OR5V1,PPP1R11,RNF39,UBD,ZFP57,ZNF311,ZNRD1"
TCGA.AA.3982	6	29425583	29966174	323	0.4213	SMALL-GAIN	NONFOCAL	11	"GABBR1,HLA-A,HLA-F,HLA-G,LOC554223,MAS1L,MOG,OR2H1,OR2H2,UBD,ZFP57"
TCGA.AA.A01R	6	29908468	36140635	2102	0.6526	SMALL-GAIN	NONFOCAL	182	Too-Many
TCGA.AA.3982	6	30033689	31400934	636	0.4805	SMALL-GAIN	NONFOCAL	42	"ABCF1,ATAT1,C6orf136,C6orf15,CCHCR1,CDSN,DDR1,DHX16,DPCR1,FLOT1,GNL1,GTF2H4,HLA-B,HLA-C,HLA-E,IER3,MDC1,MICA,MRPS18B,MUC21,MUC22,NRM,POU5F1,PPP1R10,PPP1R11,PPP1R18,PRR3,PSORS1C1,PSORS1C2,RNF39,RPP21,SFTA2,TCF19,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM39-RPP21,TRIM40,TUBB,VARS2"
TCGA.AA.A010.01A	6	30312912	30658602	93	0.589	SMALL-GAIN	NONFOCAL	13	"ABCF1,ATAT1,C6orf136,DHX16,GNL1,HLA-E,MRPS18B,NRM,PPP1R10,PPP1R18,PRR3,RPP21,TRIM39-RPP21"
TCGA.AG.3575	6	30578047	30789693	69	0.4793	SMALL-GAIN	NONFOCAL	11	"ATAT1,C6orf136,DHX16,FLOT1,IER3,MDC1,MRPS18B,NRM,PPP1R10,PPP1R18,TUBB"
TCGA.QG.A5Z1	6	31206867	34658627	1212	0.4456	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AA.3850	6	31425498	32280461	226	0.44395	SMALL-GAIN	NONFOCAL	62	"ABHD16A,AGER,AGPAT1,AIF1,APOM,ATF6B,ATP6V1G2,BAG6,C2,C4A,C4B,C4B_2,C6orf10,C6orf25,C6orf47,C6orf48,CFB,CLIC1,CSNK2B,CYP21A2,DDAH2,DDX39B,DXO,EGFL8,EHMT2,FKBPL,GPANK1,GPSM3,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MICB,MSH5,NCR3,NELFE,NEU1,NFKBIL1,NOTCH4,PBX2,PPT2,PRRC2A,PRRT1,RNF5,SAPCD1,SKIV2L,SLC44A4,STK19,TNF,TNXB,VARS,VWA7,ZBTB12"
TCGA.AA.3930.01A	6	31431409	31730150	158	0.6074	SMALL-GAIN	NONFOCAL	27	"ABHD16A,AIF1,APOM,ATP6V1G2,BAG6,C6orf25,C6orf47,CLIC1,CSNK2B,DDAH2,DDX39B,GPANK1,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MICB,MSH5,NCR3,NFKBIL1,PRRC2A,TNF"
TCGA.CK.4952.01A	6	31479322	32519459	455	0.3862	SMALL-GAIN	NONFOCAL	64	"ABHD16A,AGER,AGPAT1,AIF1,APOM,ATF6B,ATP6V1G2,BAG6,BTNL2,C2,C4A,C4B,C4B_2,C6orf10,C6orf25,C6orf47,C6orf48,CFB,CLIC1,CSNK2B,CYP21A2,DDAH2,DDX39B,DXO,EGFL8,EHMT2,FKBPL,GPANK1,GPSM3,HLA-DRA,HLA-DRB5,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MCCD1,MSH5,NCR3,NELFE,NEU1,NFKBIL1,NOTCH4,PBX2,PPT2,PRRC2A,PRRT1,RNF5,SAPCD1,SKIV2L,SLC44A4,STK19,TNF,TNXB,VARS,VWA7,ZBTB12"
TCGA.AG.3592	6	31480271	36714693	1514	0.5924	SMALL-GAIN	NONFOCAL	148	Too-Many
TCGA.AG.A00C.01A	6	31503096	31644686	82	0.4245	SMALL-GAIN	NONFOCAL	17	"AIF1,APOM,ATP6V1G2,BAG6,C6orf47,CSNK2B,DDX39B,GPANK1,LST1,LTA,LTB,LY6G5B,LY6G5C,NCR3,NFKBIL1,PRRC2A,TNF"
TCGA.AA.A010.01A	6	31556222	31708203	103	0.4634	SMALL-GAIN	NONFOCAL	19	"ABHD16A,AIF1,APOM,BAG6,C6orf25,C6orf47,CLIC1,CSNK2B,DDAH2,GPANK1,LST1,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,NCR3,PRRC2A"
TCGA.AA.3982	6	31856069	32219961	82	0.5432	SMALL-GAIN	NONFOCAL	24	"AGER,AGPAT1,ATF6B,C2,C4A,C4B,C4B_2,CFB,CYP21A2,DXO,EGFL8,EHMT2,FKBPL,GPSM3,NELFE,NOTCH4,PBX2,PPT2,PRRT1,RNF5,SKIV2L,STK19,TNXB,ZBTB12"
TCGA.A6.3810.01A	6	32487116	88775878	3393	0.4285	SMALL-GAIN	NONFOCAL	337	Too-Many
TCGA.AA.A010.01A	6	32628556	32977181	80	0.608	SMALL-GAIN	NONFOCAL	12	"BRD2,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DQA2,HLA-DQB1,HLA-DQB2,PSMB8,PSMB9,TAP1,TAP2"
TCGA.A6.6648	6	32782581	48868061	5211	0.406	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.CK.4952.01A	6	32817138	64834143	2438	0.4052	SMALL-GAIN	NONFOCAL	257	Too-Many
TCGA.AA.3850	6	33079811	37813282	1344	0.39775	SMALL-GAIN	NONFOCAL	81	"ANKS1A,ARMC12,B3GALT4,BAK1,BRPF3,C6orf1,C6orf106,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,COL11A2,CPNE5,CUTA,DAXX,DEF6,ETV7,FANCE,FGD2,FKBP5,GRM4,HMGA1,HSD17B8,IP6K3,ITPR3,KCTD20,KIFC1,LEMD2,LHFPL5,MAPK13,MAPK14,MDGA1,MLN,MTCH1,NUDT3,PACSIN1,PFDN6,PHF1,PI16,PIM1,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RGL2,RING1,RNF8,RPL10A,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SLC26A8,SLC39A7,SNRPC,SPDEF,SRPK1,SRSF3,STK38,SYNGAP1,TAF11,TAPBP,TBC1D22B,TCP11,TEAD3,TMEM217,TULP1,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9,ZFAND3,ZNF76"
TCGA.DY.A1DG	6	33094868	34503337	397	0.572	SMALL-GAIN	NONFOCAL	32	"B3GALT4,BAK1,C6orf1,COL11A2,CUTA,DAXX,GRM4,HMGA1,HSD17B8,IP6K3,ITPR3,KIFC1,LEMD2,MLN,NUDT3,PACSIN1,PFDN6,PHF1,RGL2,RING1,RPS10,RPS10-NUDT3,RPS18,RXRB,SLC39A7,SYNGAP1,TAPBP,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AA.3982	6	33126864	38031459	1347	0.5232	SMALL-GAIN	NONFOCAL	81	"ANKS1A,ARMC12,B3GALT4,BAK1,BRPF3,C6orf1,C6orf106,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,COL11A2,CPNE5,CUTA,DAXX,DEF6,ETV7,FANCE,FGD2,FKBP5,GRM4,HMGA1,HSD17B8,IP6K3,ITPR3,KCTD20,KIFC1,LEMD2,LHFPL5,MAPK13,MAPK14,MDGA1,MLN,MTCH1,NUDT3,PACSIN1,PFDN6,PHF1,PI16,PIM1,PNPLA1,PPARD,PPIL1,PXT1,RAB44,RGL2,RING1,RNF8,RPL10A,RPS10,RPS10-NUDT3,RPS18,RXRB,SCUBE3,SLC26A8,SLC39A7,SNRPC,SPDEF,SRPK1,SRSF3,STK38,SYNGAP1,TAF11,TAPBP,TBC1D22B,TCP11,TEAD3,TMEM217,TULP1,UHRF1BP1,UQCC2,VPS52,WDR46,ZBTB22,ZBTB9,ZFAND3,ZNF76"
TCGA.A6.3808.01A	6	35425259	39847047	500	0.5299	SMALL-GAIN	NONFOCAL	48	"ARMC12,BRPF3,BTBD9,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DAAM2,DNAH8,ETV7,FANCE,FGD2,FKBP5,GLO1,GLP1R,KCNK16,KCNK17,KCNK5,KCTD20,KIF6,LHFPL5,MAPK13,MAPK14,MDGA1,MTCH1,PI16,PIM1,PNPLA1,PPIL1,PXT1,RAB44,RNF8,RPL10A,SAYSD1,SLC26A8,SRPK1,SRSF3,STK38,TBC1D22B,TEAD3,TMEM217,TULP1,ZFAND3"
TCGA.AA.A010.01A	6	36953599	38775337	135	0.4171	SMALL-GAIN	NONFOCAL	13	"BTBD9,CCDC167,CMTR1,DNAH8,FGD2,GLO1,MDGA1,MTCH1,PIM1,RNF8,TBC1D22B,TMEM217,ZFAND3"
TCGA.AA.A010.01A	6	38976539	41011627	104	0.6372	SMALL-GAIN	NONFOCAL	12	"DAAM2,DNAH8,GLP1R,KCNK16,KCNK17,KCNK5,KIF6,LRFN2,MOCS1,SAYSD1,TSPO2,UNC5CL"
TCGA.CM.5341	6	40095311	44154324	1312	0.5919	SMALL-GAIN	NONFOCAL	71	"ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SRF,TAF8,TBCC,TFEB,TJAP1,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.DC.6682	6	40715657	50520017	2837	0.441	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.CM.5348	6	40733740	42148679	451	0.6102	SMALL-GAIN	NONFOCAL	25	"APOBEC2,BYSL,C6orf132,CCND3,FOXP4,FRS3,GUCA1A,MDFI,MED20,NCR2,NFYA,OARD1,PGC,PRICKLE4,TAF8,TFEB,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TSPO2,UNC5CL,USP49"
TCGA.AA.3982	6	40949865	44330555	895	0.5031	SMALL-GAIN	NONFOCAL	78	"AARS2,ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AG.3584	6	41561353	66904406	5959	0.4298	SMALL-GAIN	NONFOCAL	146	Too-Many
TCGA.D5.5540	6	41847799	52245414	3035	0.4727	SMALL-GAIN	NONFOCAL	102	Too-Many
TCGA.CM.5348	6	42439761	44796299	637	0.4944	SMALL-GAIN	NONFOCAL	52	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CDC5L,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GLTSCR1L,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PRPH2,PTCRA,PTK7,RPL7L1,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TBCC,TCTE1,TJAP1,TMEM151B,TMEM63B,TTBK1,UBR2,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.3862.01A	6	42858204	44320412	400	0.3808	SMALL-GAIN	NONFOCAL	45	"AARS2,ABCC10,C6orf223,C6orf226,CAPN11,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,GNMT,GTPBP2,HSP90AB1,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,NFKBIE,PEX6,POLH,POLR1C,PPP2R5D,PTCRA,PTK7,RRP36,RSPH9,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,TCTE1,TJAP1,TMEM151B,TMEM63B,TTBK1,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AG.A00C.01A	6	42890723	43042314	83	0.4652	SMALL-GAIN	NONFOCAL	11	"CNPY3,CUL7,GNMT,KLC4,KLHDC3,MEA1,MRPL2,PEX6,PPP2R5D,PTCRA,RRP36"
TCGA.AF.2693	6	42932714	44206749	303	0.6214	SMALL-GAIN	NONFOCAL	34	"ABCC10,C6orf223,CAPN11,CRIP3,CUL7,CUL9,DLK2,DNPH1,GTPBP2,KLC4,KLHDC3,LRRC73,MAD2L1BP,MEA1,MRPL14,MRPL2,MRPS18A,PEX6,POLH,POLR1C,PPP2R5D,PTK7,RRP36,RSPH9,SLC22A7,SLC29A1,SRF,TJAP1,TMEM63B,TTBK1,VEGFA,XPO5,YIPF3,ZNF318"
TCGA.AA.A02E.01A	6	44320412	53370141	452	0.4869	SMALL-GAIN	NONFOCAL	56	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,EFHC1,ELOVL5,ENPP4,ENPP5,FBXO9,GCLC,GCM1,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17A,IL17F,MCM3,MEP1A,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SPATS1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TMEM14A,TNFRSF21,TRAM2"
TCGA.A6.3808.01A	6	44344689	74078457	1007	0.5014	SMALL-GAIN	NONFOCAL	96	"ADGRB3,ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,B3GAT2,BAG2,BEND6,BMP5,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,COL19A1,COL21A1,COL9A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DPPA5,DST,EFHC1,ELOVL5,ENPP4,ENPP5,EYS,FAM135A,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MCM3,MEP1A,MLIP,MTRNR2L9,MUT,OGFRL1,OOEP,OPN5,PAQR8,PGK2,PHF3,PKHD1,PLA2G7,PRIM2,PTCHD4,PTP4A1,RAB23,RCAN2,RHAG,RIMS1,RUNX2,SDHAF4,SLC25A27,SMAP1,SPATS1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AZ.4684.01A	6	44387134	51938200	325	0.5087	SMALL-GAIN	NONFOCAL	38	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,ENPP4,ENPP5,GLYATL3,MEP1A,MUT,OPN5,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2B,TFAP2D,TNFRSF21"
TCGA.AA.3666	6	44837355	53562151	2684	0.4488	SMALL-GAIN	NONFOCAL	55	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,C6orf141,CD2AP,CENPQ,CLIC5,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,EFHC1,ELOVL5,ENPP4,ENPP5,FBXO9,GCLC,GCM1,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,IL17A,IL17F,KLHL31,MCM3,MEP1A,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PTCHD4,RCAN2,RHAG,RUNX2,SLC25A27,SUPT3H,TDRD6,TFAP2B,TFAP2D,TMEM14A,TNFRSF21,TRAM2"
TCGA.EI.6511	6	45922401	47670268	619	0.4402	SMALL-GAIN	NONFOCAL	16	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,CD2AP,CLIC5,CYP39A1,ENPP4,ENPP5,MEP1A,PLA2G7,RCAN2,SLC25A27,TDRD6,TNFRSF21"
TCGA.CK.5914.01A	6	49479651	50740311	56	0.4309	SMALL-GAIN	NONFOCAL	13	"C6orf141,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,PGK2,RHAG,TFAP2D"
TCGA.AG.A00Y.01A	6	52380756	53778624	101	0.4396	SMALL-GAIN	NONFOCAL	14	"ELOVL5,FBXO9,GCLC,GCM1,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,ICK,KLHL31,LRRC1,TMEM14A,TRAM2"
TCGA.AA.A02E.01A	6	53378975	74104620	519	0.4802	SMALL-GAIN	NONFOCAL	42	"ADGRB3,B3GAT2,BAG2,BEND6,BMP5,COL19A1,COL21A1,COL9A1,DDX43,DPPA5,DST,EYS,FAM135A,FAM83B,GCLC,GFRAL,HCRTR2,HMGCLL1,KCNQ5,KHDC1,KHDC1L,KHDC3L,KHDRBS2,KIAA1586,KLHL31,LGSN,LMBRD1,LOC441155,LRRC1,MLIP,MTRNR2L9,OGFRL1,OOEP,PHF3,PRIM2,PTP4A1,RAB23,RIMS1,SDHAF4,SMAP1,TINAG,ZNF451"
TCGA.AZ.4684.01A	6	56473219	64776184	126	0.5375	SMALL-GAIN	NONFOCAL	13	"BAG2,BEND6,DST,EYS,KHDRBS2,KIAA1586,LGSN,MTRNR2L9,PHF3,PRIM2,PTP4A1,RAB23,ZNF451"
TCGA.AA.3509.01A	6	56476254	70899966	230	0.5535	SMALL-GAIN	NONFOCAL	17	"ADGRB3,BAG2,BEND6,COL19A1,DST,EYS,KHDRBS2,KIAA1586,LGSN,LMBRD1,LOC441155,MTRNR2L9,PHF3,PRIM2,PTP4A1,RAB23,ZNF451"
TCGA.DM.A28M.01A	6	65146012	73839453	236	0.5438	SMALL-GAIN	NONFOCAL	13	"ADGRB3,B3GAT2,COL19A1,COL9A1,EYS,FAM135A,KCNQ5,LMBRD1,LOC441155,OGFRL1,RIMS1,SDHAF4,SMAP1"
TCGA.AA.A00F.01A	6	73879417	74432887	59	0.3823	SMALL-GAIN	NONFOCAL	12	"CD109,DDX43,DPPA5,EEF1A1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AA.A02E.01A	6	74432887	133095324	2268	0.4303	SMALL-GAIN	NONFOCAL	225	Too-Many
TCGA.DM.A28M.01A	6	74493403	83822995	310	0.3995	SMALL-GAIN	NONFOCAL	24	"BCKDHB,C6orf7,CD109,COL12A1,COX7A2,DOPEY1,ELOVL4,FAM46A,FILIP1,HMGN3,HTR1B,IBTK,IMPG1,IRAK1BP1,LCA5,MEI4,MYO6,PHIP,SENP6,SH3BGRL2,TMEM30A,TPBG,TTK,UBE3D"
TCGA.DM.A28H	6	79039233	84936241	1693	0.3786	SMALL-GAIN	NONFOCAL	23	"BCKDHB,C6orf7,CEP162,CYB5R4,DOPEY1,ELOVL4,FAM46A,HMGN3,IBTK,IRAK1BP1,LCA5,ME1,MRAP2,PGM3,PHIP,PRSS35,RIPPLY2,RWDD2A,SH3BGRL2,SNAP91,TPBG,TTK,UBE3D"
TCGA.AA.3679	6	79039233	162971547	25969	0.393	SMALL-GAIN	NONFOCAL	347	Too-Many
TCGA.AZ.4684.01A	6	80982824	84895998	171	0.5273	SMALL-GAIN	NONFOCAL	15	"BCKDHB,CEP162,CYB5R4,DOPEY1,FAM46A,IBTK,ME1,MRAP2,PGM3,PRSS35,RIPPLY2,RWDD2A,SNAP91,TPBG,UBE3D"
TCGA.A6.3808.01A	6	90642145	105198178	243	0.6107	SMALL-GAIN	NONFOCAL	25	"ASCC3,BACH2,CCNC,COQ3,EPHA7,FAXC,FBXL4,FHL5,FUT9,GPR63,GRIK2,HACE1,KLHL32,MANEA,MAP3K7,MCHR2,MMS22L,NDUFAF4,PNISR,POU3F2,PRDM13,SIM1,TSTD3,UFL1,USP45"
TCGA.AA.3561	6	105810351	170918030	21481	0.5133	SMALL-GAIN	NONFOCAL	300	Too-Many
TCGA.A6.3808.01A	6	111408939	131903712	789	0.6745	SMALL-GAIN	NONFOCAL	79	"AKAP7,ARG1,ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,ECHDC1,EPB41L2,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,FYN,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KIAA1919,KPNA5,L3MBTL3,LAMA2,LAMA4,MAN1A1,MARCKS,MCM9,MED23,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,REV3L,RFPL4B,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SAMD3,SERINC1,SLC16A10,SLC35F1,SMLR1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TMEM200A,TMEM244,TPD52L1,TRAF3IP2,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,TUBE1,VGLL2,WISP3,ZUFSP"
TCGA.AA.3509.01A	6	111680008	130460716	714	0.4334	SMALL-GAIN	NONFOCAL	70	"ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,ECHDC1,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,FYN,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,L3MBTL3,LAMA2,LAMA4,MAN1A1,MARCKS,MCM9,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,REV3L,RFPL4B,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SERINC1,SLC35F1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TMEM244,TPD52L1,TRAF3IP2,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,TUBE1,VGLL2,WISP3,ZUFSP"
TCGA.AZ.4684.01A	6	112388106	130460716	672	0.6276	SMALL-GAIN	NONFOCAL	67	"ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,ECHDC1,FABP7,FAM162B,FAM184A,FAM229B,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,L3MBTL3,LAMA2,LAMA4,MAN1A1,MARCKS,MCM9,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,RFPL4B,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SERINC1,SLC35F1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TMEM244,TPD52L1,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,TUBE1,VGLL2,WISP3,ZUFSP"
TCGA.AY.6196	6	121028020	133059513	3630	0.4093	SMALL-GAIN	NONFOCAL	52	"AKAP7,ARG1,ARHGAP18,C6orf58,CENPW,CLVS2,CTAGE9,CTGF,ECHDC1,ENPP1,ENPP3,EPB41L2,FABP7,GJA1,HDDC2,HEY2,HINT3,HSF2,KIAA0408,L3MBTL3,LAMA2,MED23,MOXD1,NCOA7,NKAIN2,OR2A4,PKIB,PTPRK,RNF146,RNF217,RSPO3,SAMD3,SERINC1,SMLR1,SMPDL3A,SOGA3,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBC1D32,THEMIS,TMEM200A,TMEM244,TPD52L1,TRDN,TRMT11,VNN1,VNN3"
TCGA.AA.A00N.01A	6	129498804	133849803	314	0.6754	SMALL-GAIN	NONFOCAL	30	"AKAP7,ARG1,ARHGAP18,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,EYA4,L3MBTL3,LAMA2,MED23,MOXD1,OR2A4,RPS12,SAMD3,SLC18B1,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TMEM200A,TMEM244,VNN1,VNN2,VNN3"
TCGA.AG.3594	6	131090111	143528262	3806	0.4293	SMALL-GAIN	NONFOCAL	62	"ABRACL,ADGRG6,AHI1,AIG1,AKAP7,ALDH8A1,ARFGEF3,ARG1,BCLAF1,CCDC28A,CITED2,CTAGE9,CTGF,ECT2L,ENPP1,ENPP3,EPB41L2,EYA4,HBS1L,HEBP2,HECA,HIVEP2,IFNGR1,IL20RA,IL22RA2,LOC100507462,MAP3K5,MAP7,MED23,MOXD1,MTFR2,MYB,NHSL1,NMBR,OLIG3,OR2A4,PBOV1,PDE7B,PERP,PEX7,REPS1,RPS12,SGK1,SLC18B1,SLC2A12,SLC35D3,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TBPL1,TCF21,TNFAIP3,TXLNB,VNN1,VNN2,VNN3,VTA1"
TCGA.CK.5914.01A	6	132722263	133105025	43	0.6507	SMALL-GAIN	NONFOCAL	12	"MOXD1,SLC18B1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,VNN1,VNN2,VNN3"
TCGA.CK.4952.01A	6	132915476	170734476	1955	0.4071	SMALL-GAIN	NONFOCAL	169	Too-Many
TCGA.AA.A00N.01A	6	139159439	143800186	124	0.5614	SMALL-GAIN	NONFOCAL	13	"ABRACL,ADAT2,ADGRG6,AIG1,CITED2,ECT2L,HECA,HIVEP2,NMBR,PEX3,REPS1,TXLNB,VTA1"
TCGA.DM.A28K	6	141988465	146578750	1378	0.4943	SMALL-GAIN	NONFOCAL	19	"ADAT2,ADGRG6,AIG1,EPM2A,FBXO30,FUCA2,GRM1,HIVEP2,LTV1,NMBR,PEX3,PHACTR2,PLAGL1,SF3B5,SHPRH,STX11,UTRN,VTA1,ZC2HC1B"
TCGA.AA.3811	6	148295162	153384663	1995	0.4353	SMALL-GAIN	NONFOCAL	34	"AKAP12,ARMT1,CCDC170,ESR1,FBXO5,GINM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,MTRF1L,MYCT1,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RGS17,RMND1,SASH1,SUMO4,SYNE1,TAB2,ULBP1,ULBP2,ULBP3,UST,VIP,ZBTB2,ZC3H12D"
TCGA.AA.A00F.01A	6	149838437	150537915	78	0.4221	SMALL-GAIN	NONFOCAL	14	"GINM1,KATNA1,LATS1,LRP11,NUP43,PCMT1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,ULBP1,ULBP2,ULBP3"
TCGA.AG.A00Y.01A	6	149842159	151751241	142	0.4497	SMALL-GAIN	NONFOCAL	20	"AKAP12,GINM1,IYD,KATNA1,LATS1,LRP11,MTHFD1L,NUP43,PCMT1,PLEKHG1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,RMND1,ULBP1,ULBP2,ULBP3,ZBTB2"
TCGA.AA.A010.01A	6	151865660	158516689	366	0.405	SMALL-GAIN	NONFOCAL	21	"ARID1B,CCDC170,CLDN20,CNKSR3,ESR1,FBXO5,IPCEF1,MTRF1L,MYCT1,NOX3,OPRM1,RGS17,SCAF8,SNX9,SYNE1,SYNJ2,TFB1M,TIAM2,TMEM242,VIP,ZDHHC14"
TCGA.A6.3808.01A	6	152163695	155153816	230	0.4598	SMALL-GAIN	NONFOCAL	11	"CNKSR3,ESR1,FBXO5,IPCEF1,MTRF1L,MYCT1,OPRM1,RGS17,SCAF8,SYNE1,VIP"
TCGA.AA.3811	6	154283837	170918030	6443	0.3948	SMALL-GAIN	NONFOCAL	74	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.A6.3808.01A	6	160551086	165989840	172	0.4495	SMALL-GAIN	NONFOCAL	12	"AGPAT4,C6orf118,LPA,MAP3K4,PACRG,PARK2,PDE10A,PLG,QKI,SLC22A1,SLC22A2,SLC22A3"
TCGA.AA.3811	7	44407	3292150	720	0.6381	SMALL-GAIN	NONFOCAL	35	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3850	7	44407	3329507	736	0.41745	SMALL-GAIN	NONFOCAL	35	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.D5.7000	7	44407	3609711	843	0.3863	SMALL-GAIN	NONFOCAL	36	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3488	7	44407	3886253	967	0.4018	SMALL-GAIN	NONFOCAL	36	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AG.A026	7	44407	5583055	1491	0.5803	SMALL-GAIN	NONFOCAL	48	"ACTB,ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FBXL18,FOXK1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,PAPOLB,PDGFA,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.D5.5541	7	44407	6451480	1666	0.4532	SMALL-GAIN	NONFOCAL	63	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.AA.3666	7	44407	6742750	1717	0.4205	SMALL-GAIN	NONFOCAL	70	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.CM.5864	7	44407	6776584	1711	0.6597	SMALL-GAIN	NONFOCAL	70	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3982	7	44407	7040906	1737	0.5163	SMALL-GAIN	NONFOCAL	71	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.DY.A1DC	7	44407	8262856	2358	0.4053	SMALL-GAIN	NONFOCAL	78	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3688	7	44407	9041669	2781	0.5495	SMALL-GAIN	NONFOCAL	79	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3495	7	44407	9124515	2822	0.6049	SMALL-GAIN	NONFOCAL	79	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.DM.A0XF	7	44407	11727334	3884	0.5208	SMALL-GAIN	NONFOCAL	82	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.CM.6170	7	44407	11916353	3989	0.4848	SMALL-GAIN	NONFOCAL	82	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AF.3913	7	44407	13102901	4474	0.605	SMALL-GAIN	NONFOCAL	86	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3872	7	44407	13462619	4615	0.4173	SMALL-GAIN	NONFOCAL	86	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3660	7	44407	14927542	5218	0.4789	SMALL-GAIN	NONFOCAL	88	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DGKB,DNAAF5,EIF2AK1,EIF3B,ELFN1,ETV1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3814	7	44407	15225562	5354	0.5813	SMALL-GAIN	NONFOCAL	88	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DGKB,DNAAF5,EIF2AK1,EIF3B,ELFN1,ETV1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.3975	7	44407	16803989	5996	0.4558	SMALL-GAIN	NONFOCAL	96	"ACTB,ADAP1,AGMO,AIMP2,AMZ1,ANKMY2,ANKRD61,AP5Z1,ARL4A,BRAT1,BZW2,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DGKB,DNAAF5,EIF2AK1,EIF3B,ELFN1,ETV1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,ICA1,INTS1,IQCE,ISPD,KDELR2,LFNG,LRRC72,MAD1L1,MAFK,MEOX2,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PDGFA,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SOSTDC1,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TSPAN13,TTYH3,UMAD1,UNCX,USP42,VWDE,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.A6.2671	7	44407	22769772	8501	0.3989	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.5M.AATE	7	44407	25348883	9479	0.6771	SMALL-GAIN	NONFOCAL	134	Too-Many
TCGA.G4.6299	7	44407	25629193	9662	0.5895	SMALL-GAIN	NONFOCAL	134	Too-Many
TCGA.D5.6536	7	44407	30412820	11465	0.4426	SMALL-GAIN	NONFOCAL	166	Too-Many
TCGA.A6.2679	7	44407	35095244	13107	0.3833	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.AA.3544	7	44407	38287926	14385	0.4421	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AA.3664	7	44407	38287926	14385	0.6725	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AG.3581	7	44407	38287926	14381	0.3897	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.A6.3807	7	44407	38290713	14287	0.5046	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AA.3667	7	44407	38290713	14389	0.5017	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AA.3685	7	44407	38290713	14386	0.6723	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AA.3693	7	44407	38290713	14384	0.4692	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AA.3696	7	44407	38290713	14387	0.4613	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AA.3842	7	44407	38290713	14368	0.4242	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AA.A02Y	7	44407	38290713	14366	0.4656	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AY.A8YK	7	44407	38290713	14359	0.5467	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.AA.3680	7	44407	38303119	14388	0.4116	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.AA.3855	7	44407	38303119	14360	0.4607	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.AA.3858	7	44407	38303119	14386	0.4435	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.AA.3955	7	44407	38303119	14367	0.6375	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.F4.6459	7	44407	40117097	14995	0.6095	SMALL-GAIN	NONFOCAL	209	Too-Many
TCGA.AA.A01Z	7	44407	40470218	15060	0.5092	SMALL-GAIN	NONFOCAL	211	Too-Many
TCGA.AG.3893	7	44407	42084436	15550	0.5686	SMALL-GAIN	NONFOCAL	213	Too-Many
TCGA.AZ.4308	7	44407	44839615	16407	0.4245	SMALL-GAIN	NONFOCAL	241	Too-Many
TCGA.DM.A1D6	7	44407	48579357	17758	0.4764	SMALL-GAIN	NONFOCAL	260	Too-Many
TCGA.A6.6649	7	44407	48775247	17816	0.5281	SMALL-GAIN	NONFOCAL	260	Too-Many
TCGA.DM.A1D4	7	44407	51098969	18708	0.4658	SMALL-GAIN	NONFOCAL	268	Too-Many
TCGA.AF.A56K	7	44407	53067489	19453	0.5329	SMALL-GAIN	NONFOCAL	268	Too-Many
TCGA.DC.6157	7	44407	53213352	19375	0.4705	SMALL-GAIN	NONFOCAL	269	Too-Many
TCGA.D5.6923	7	44407	54219461	19825	0.4774	SMALL-GAIN	NONFOCAL	269	Too-Many
TCGA.A6.6652	7	44407	55291078	20259	0.4478	SMALL-GAIN	NONFOCAL	272	Too-Many
TCGA.EI.6885	7	44407	56393851	20452	0.5885	SMALL-GAIN	NONFOCAL	284	Too-Many
TCGA.AZ.6608	7	44407	57914384	20639	0.6514	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.4N.A93T	7	44407	61846654	20702	0.4747	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.5M.AATA	7	44407	61888127	20683	0.4788	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.AD.6548	7	44407	61888127	20636	0.6349	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.AD.6899	7	44407	61888127	20655	0.5613	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.AF.2690	7	44407	61987337	20710	0.3958	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.AU.3779	7	44407	62080740	20709	0.4818	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.DM.A0XD	7	44407	62111503	20625	0.4131	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.G4.6303	7	44407	62190867	20717	0.5649	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.DM.A28H	7	44407	62418967	20677	0.6612	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.CM.5868	7	44407	62669143	20722	0.4782	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.CI.6624	7	44407	64240322	20944	0.3788	SMALL-GAIN	NONFOCAL	292	Too-Many
TCGA.CA.6719	7	44407	64324234	20938	0.5133	SMALL-GAIN	NONFOCAL	293	Too-Many
TCGA.DY.A0XA	7	44407	64951817	21064	0.6452	SMALL-GAIN	NONFOCAL	297	Too-Many
TCGA.AH.6644	7	44407	68268259	21711	0.4574	SMALL-GAIN	NONFOCAL	307	Too-Many
TCGA.D5.6537	7	44407	70822816	22367	0.4564	SMALL-GAIN	NONFOCAL	309	Too-Many
TCGA.AZ.6598	7	44407	76053570	23228	0.4776	SMALL-GAIN	NONFOCAL	359	Too-Many
TCGA.NH.A6GA	7	44407	79734676	24288	0.4307	SMALL-GAIN	NONFOCAL	370	Too-Many
TCGA.G4.6626	7	44407	87430668	26571	0.4707	SMALL-GAIN	NONFOCAL	388	Too-Many
TCGA.F5.6464	7	44407	88377806	26797	0.4861	SMALL-GAIN	NONFOCAL	393	Too-Many
TCGA.DT.5265	7	44407	91029467	27608	0.3864	SMALL-GAIN	NONFOCAL	402	Too-Many
TCGA.AA.3524	7	44407	106099839	31174	0.4582	SMALL-GAIN	NONFOCAL	573	Too-Many
TCGA.DM.A1DB	7	44407	110319533	32454	0.4131	SMALL-GAIN	NONFOCAL	593	Too-Many
TCGA.D5.6531	7	44407	110537711	32533	0.4057	SMALL-GAIN	NONFOCAL	593	Too-Many
TCGA.F5.6810	7	44407	112422102	32945	0.4455	SMALL-GAIN	NONFOCAL	599	Too-Many
TCGA.AY.6386	7	44407	118659207	34310	0.4465	SMALL-GAIN	NONFOCAL	617	Too-Many
TCGA.G5.6572	7	44407	119073397	34314	0.3887	SMALL-GAIN	NONFOCAL	617	Too-Many
TCGA.D5.6538	7	44407	127284399	36487	0.6483	SMALL-GAIN	NONFOCAL	648	Too-Many
TCGA.CM.4752	7	44407	134220596	38406	0.5104	SMALL-GAIN	NONFOCAL	696	Too-Many
TCGA.EI.6883	7	44407	135205421	38738	0.3915	SMALL-GAIN	NONFOCAL	705	Too-Many
TCGA.DC.6154	7	44407	152031599	43514	0.4146	SMALL-GAIN	NONFOCAL	859	Too-Many
TCGA.A6.5659	7	44407	159119219	42291	0.6347	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.A6.5660	7	44407	159119219	45879	0.4838	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.A6.6140	7	44407	159119219	46084	0.3988	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.3502	7	44407	159119219	46042	0.5061	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.3534	7	44407	159119219	46059	0.46	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.3560	7	44407	159119219	46072	0.4306	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.3655	7	44407	159119219	46062	0.5157	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.3697	7	44407	159119219	46026	0.3983	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.3712	7	44407	159119219	46071	0.4897	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.3994	7	44407	159119219	46004	0.4128	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.A02O	7	44407	159119219	46045	0.4778	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AD.6888	7	44407	159119219	46032	0.4825	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AG.3584	7	44407	159119219	46060	0.4137	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AG.3725	7	44407	159119219	46015	0.6028	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AG.3742	7	44407	159119219	45722	0.4128	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AG.4022	7	44407	159119219	46073	0.6414	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AY.4071	7	44407	159119219	45839	0.4497	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AZ.4681	7	44407	159119219	46037	0.4565	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AZ.4682	7	44407	159119219	46049	0.4383	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AZ.5403	7	44407	159119219	45990	0.3897	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AZ.5407	7	44407	159119219	46068	0.4885	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AZ.6607	7	44407	159119219	45949	0.5585	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.CA.5796	7	44407	159119219	45966	0.45	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.CL.5917	7	44407	159119219	45939	0.4133	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.CL.5918	7	44407	159119219	45960	0.4093	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.D5.6533	7	44407	159119219	45875	0.3892	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.DC.4749	7	44407	159119219	46074	0.3839	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.DM.A1DA	7	44407	159119219	46051	0.3993	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.DM.A1HA	7	44407	159119219	46059	0.4002	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.DM.A285	7	44407	159119219	45936	0.4008	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.DM.A288	7	44407	159119219	45966	0.6727	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.EF.5830	7	44407	159119219	45971	0.4198	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.EI.6510	7	44407	159119219	45973	0.4543	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.F5.6863	7	44407	159119219	45967	0.3821	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.G4.6293	7	44407	159119219	46018	0.3794	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.G4.6306	7	44407	159119219	46060	0.4126	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.G4.6310	7	44407	159119219	46033	0.6301	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.G4.6317	7	44407	159119219	46067	0.3919	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.G4.6320	7	44407	159119219	46066	0.5175	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.NH.A6GC	7	44407	159119219	46019	0.423	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.NH.A8F7	7	44407	159119219	45899	0.4704	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.QG.A5Z1	7	44407	159119219	45672	0.3846	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.A6.5656	7	46238	159119219	45885	0.4345	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.3496	7	46238	159119219	45921	0.4184	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AG.4015	7	50256	73065691	22900	0.6307	SMALL-GAIN	NONFOCAL	320	Too-Many
TCGA.F4.6460	7	71275	32633020	12393	0.5264	SMALL-GAIN	NONFOCAL	181	Too-Many
TCGA.AY.5543	7	87972	38303119	14247	0.4052	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.A6.3810.01A	7	193151	6864063	718	0.5141	SMALL-GAIN	NONFOCAL	71	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.CM.4750.01A	7	193151	158936978	8499	0.4335	SMALL-GAIN	NONFOCAL	881	Too-Many
TCGA.AA.A02K.01A	7	195505	1478460	95	0.4003	SMALL-GAIN	NONFOCAL	16	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,FAM20C,GET4,GPER1,GPR146,MICALL2,PDGFA,PRKAR1B,SUN1,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.3967.01A	7	195537	1481809	80	0.5479	SMALL-GAIN	NONFOCAL	16	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,FAM20C,GET4,GPER1,GPR146,MICALL2,PDGFA,PRKAR1B,SUN1,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AG.A014.01A	7	195537	5643466	283	0.585	SMALL-GAIN	NONFOCAL	49	"ACTB,ADAP1,AMZ1,AP5Z1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,PAPOLB,PDGFA,PRKAR1B,PSMG3,RADIL,RBAK,RBAK-RBAKDN,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,WI2-2373I1.2,WIPI2,ZFAND2A"
TCGA.F5.6811.01A	7	288234	158629739	8468	0.5125	SMALL-GAIN	NONFOCAL	879	Too-Many
TCGA.AG.A036.01A	7	290588	4789433	343	0.5482	SMALL-GAIN	NONFOCAL	37	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FOXK1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SDK1,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AG.A00Y.01A	7	538119	6861855	451	0.4336	SMALL-GAIN	NONFOCAL	69	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.AA.A00L.01A	7	540008	2317708	85	0.5433	SMALL-GAIN	NONFOCAL	23	"ADAP1,C7orf50,COX19,CYP2W1,DNAAF5,ELFN1,FTSJ2,GET4,GPER1,GPR146,INTS1,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,UNCX,ZFAND2A"
TCGA.AA.A00F.01A	7	540008	25267873	701	0.438	SMALL-GAIN	NONFOCAL	132	Too-Many
TCGA.AA.A00Z.01A	7	2577661	45108001	41	0.3976	SMALL-GAIN	NONFOCAL	216	Too-Many
TCGA.AF.3914.01A	7	2701241	5364679	149	0.4169	SMALL-GAIN	NONFOCAL	15	"AMZ1,AP5Z1,CARD11,FOXK1,GNA12,MMD2,PAPOLB,RADIL,RBAK,RBAK-RBAKDN,SDK1,SLC29A4,TNRC18,TTYH3,WIPI2"
TCGA.3L.AA1B	7	3612420	109138903	31266	0.3873	SMALL-GAIN	NONFOCAL	557	Too-Many
TCGA.AA.3850	7	3885563	7060086	779	0.43505	SMALL-GAIN	NONFOCAL	36	"ACTB,AIMP2,ANKRD61,AP5Z1,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3811	7	4139469	7062902	670	0.6185	SMALL-GAIN	NONFOCAL	36	"ACTB,AIMP2,ANKRD61,AP5Z1,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.A036.01A	7	4805489	57533402	2339	0.6421	SMALL-GAIN	NONFOCAL	250	Too-Many
TCGA.AG.3891.01A	7	4946976	6864063	234	0.3948	SMALL-GAIN	NONFOCAL	31	"ACTB,AIMP2,ANKRD61,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PMS2,RAC1,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3930.01A	7	5385186	6864063	213	0.4697	SMALL-GAIN	NONFOCAL	26	"ACTB,AIMP2,ANKRD61,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FSCN1,GRID2IP,KDELR2,OCM,PMS2,RAC1,RNF216,RSPH10B,RSPH10B2,TNRC18,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.A026	7	5608931	56711895	19024	0.6704	SMALL-GAIN	NONFOCAL	236	Too-Many
TCGA.AM.5820	7	5668065	11418983	2221	0.4205	SMALL-GAIN	NONFOCAL	33	"AIMP2,ANKRD61,C1GALT1,C7orf26,CCZ1,CCZ1B,COL28A1,CYTH3,DAGLB,EIF2AK1,FAM220A,GLCCI1,GRID2IP,ICA1,KDELR2,MIOS,NDUFA4,NXPH1,OCM,PHF14,PMS2,RAC1,RNF216,RPA3,RSPH10B,RSPH10B2,THSD7A,UMAD1,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.A00C.01A	7	5769046	6864063	154	0.505	SMALL-GAIN	NONFOCAL	22	"AIMP2,ANKRD61,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,OCM,PMS2,RAC1,RNF216,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.EI.6511	7	5901197	141761873	39137	0.4918	SMALL-GAIN	NONFOCAL	706	Too-Many
TCGA.AA.3862.01A	7	6026361	6797327	120	0.6039	SMALL-GAIN	NONFOCAL	18	"AIMP2,ANKRD61,C7orf26,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,PMS2,RAC1,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.BM.6198	7	6451480	28172065	8847	0.44295	SMALL-GAIN	NONFOCAL	95	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,C7orf26,C7orf31,C7orf71,CBX3,CCDC126,CCZ1B,CDCA7L,COL28A1,CYCS,DAGLB,DFNA5,DGKB,DNAH11,ETV1,EVX1,FAM126A,FAM221A,FERD3L,GLCCI1,GPNMB,GRID2IP,HDAC9,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,ICA1,IGF2BP3,IL6,ISPD,ITGB8,JAZF1,KDELR2,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MIOS,MPP6,NDUFA4,NFE2L3,NPVF,NPY,NUPL2,NXPH1,OSBPL3,PHF14,PRPS1L1,RAPGEF5,RPA3,RSPH10B,RSPH10B2,SCIN,SKAP2,SNX10,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,TAX1BP1,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.D5.5541	7	6465908	149940827	41331	0.504	SMALL-GAIN	NONFOCAL	758	Too-Many
TCGA.AA.A00Q.01A	7	6805278	23871708	319	0.394	SMALL-GAIN	NONFOCAL	59	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,CCDC126,CCZ1B,CDCA7L,COL28A1,DGKB,DNAH11,ETV1,FAM126A,FAM221A,FERD3L,GLCCI1,GPNMB,HDAC9,ICA1,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MIOS,NDUFA4,NUPL2,NXPH1,PHF14,PRPS1L1,RAPGEF5,RPA3,RSPH10B,RSPH10B2,SCIN,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE"
TCGA.AG.4009.01A	7	6845555	16745598	232	0.5849	SMALL-GAIN	NONFOCAL	25	"AGMO,ANKMY2,ARL4A,BZW2,C1GALT1,CCZ1B,COL28A1,DGKB,ETV1,GLCCI1,ICA1,ISPD,LRRC72,MEOX2,MIOS,NDUFA4,NXPH1,PHF14,RPA3,SCIN,SOSTDC1,THSD7A,TMEM106B,UMAD1,VWDE"
TCGA.AZ.4684.01A	7	6863699	11078354	91	0.6423	SMALL-GAIN	NONFOCAL	11	"C1GALT1,CCZ1B,COL28A1,GLCCI1,ICA1,MIOS,NDUFA4,NXPH1,PHF14,RPA3,UMAD1"
TCGA.CM.5864	7	6965894	132569598	36166	0.5533	SMALL-GAIN	NONFOCAL	620	Too-Many
TCGA.AA.3666	7	7245267	38290713	12552	0.3938	SMALL-GAIN	NONFOCAL	131	Too-Many
TCGA.AA.3509.01A	7	7273910	20689608	383	0.4072	SMALL-GAIN	NONFOCAL	38	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C1GALT1,COL28A1,DGKB,ETV1,FERD3L,GLCCI1,HDAC9,ICA1,ISPD,ITGB8,LRRC72,MACC1,MEOX2,MIOS,NDUFA4,NXPH1,PHF14,PRPS1L1,RPA3,SCIN,SNX13,SOSTDC1,THSD7A,TMEM106B,TMEM196,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE"
TCGA.AA.A029.01A	7	7273910	43843226	1341	0.4071	SMALL-GAIN	NONFOCAL	149	Too-Many
TCGA.AA.A02H.01A	7	7273910	54636659	1750	0.4105	SMALL-GAIN	NONFOCAL	199	Too-Many
TCGA.AA.3862.01A	7	7283113	34980309	1174	0.4089	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AA.A00L.01A	7	7399973	20403203	150	0.5828	SMALL-GAIN	NONFOCAL	36	"AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,COL28A1,DGKB,ETV1,FERD3L,GLCCI1,HDAC9,ICA1,ISPD,ITGB8,LRRC72,MACC1,MEOX2,MIOS,NDUFA4,NXPH1,PHF14,PRPS1L1,RPA3,SCIN,SNX13,SOSTDC1,THSD7A,TMEM106B,TMEM196,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE"
TCGA.AG.A01N.01A	7	7457438	16793527	216	0.4605	SMALL-GAIN	NONFOCAL	24	"AGMO,ANKMY2,ARL4A,BZW2,COL28A1,DGKB,ETV1,GLCCI1,ICA1,ISPD,LRRC72,MEOX2,MIOS,NDUFA4,NXPH1,PHF14,RPA3,SCIN,SOSTDC1,THSD7A,TMEM106B,TSPAN13,UMAD1,VWDE"
TCGA.AG.A01W.01A	7	7578674	24708863	603	0.4119	SMALL-GAIN	NONFOCAL	56	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,CCDC126,CDCA7L,DGKB,DNAH11,ETV1,FAM126A,FAM221A,FERD3L,GLCCI1,GPNMB,HDAC9,ICA1,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MIOS,MPP6,NDUFA4,NPY,NUPL2,NXPH1,PHF14,PRPS1L1,RAPGEF5,RPA3,SCIN,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,UMAD1,VWDE"
TCGA.AA.3688	7	9048571	38290713	11604	0.5036	SMALL-GAIN	NONFOCAL	123	Too-Many
TCGA.AA.A017.01A	7	11014410	51258500	1663	0.3852	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.DM.A0XF	7	11758158	25894685	5865	0.5426	SMALL-GAIN	NONFOCAL	53	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,ARL4A,BZW2,C7orf31,CCDC126,CDCA7L,CYCS,DFNA5,DGKB,DNAH11,ETV1,FAM126A,FAM221A,FERD3L,GPNMB,HDAC9,IGF2BP3,IL6,ISPD,ITGB8,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MPP6,NPVF,NPY,NUPL2,OSBPL3,PRPS1L1,RAPGEF5,SCIN,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,THSD7A,TMEM106B,TMEM196,TOMM7,TRA2A,TSPAN13,TWIST1,TWISTNB,VWDE"
TCGA.DY.A1DC	7	11774240	17074775	2197	0.4528	SMALL-GAIN	NONFOCAL	17	"AGMO,AGR2,AGR3,ANKMY2,ARL4A,BZW2,DGKB,ETV1,ISPD,LRRC72,MEOX2,SCIN,SOSTDC1,THSD7A,TMEM106B,TSPAN13,VWDE"
TCGA.CM.6170	7	11926346	64156158	16983	0.4971	SMALL-GAIN	NONFOCAL	210	Too-Many
TCGA.AM.5820	7	11987339	45293817	12504	0.4307	SMALL-GAIN	NONFOCAL	166	Too-Many
TCGA.AF.3913	7	13131479	159119219	41421	0.5979	SMALL-GAIN	NONFOCAL	795	Too-Many
TCGA.AZ.6606	7	13730227	37751467	9382	0.5642	SMALL-GAIN	NONFOCAL	111	Too-Many
TCGA.G4.6294	7	13860345	29377271	6299	0.4495	SMALL-GAIN	NONFOCAL	73	"ABCB5,AGMO,AGR2,AGR3,AHR,ANKMY2,BZW2,C7orf31,C7orf71,CBX3,CCDC126,CDCA7L,CHN2,CPVL,CREB5,CYCS,DFNA5,DGKB,DNAH11,ETV1,EVX1,FAM126A,FAM221A,FERD3L,GPNMB,HDAC9,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,IL6,ISPD,ITGB8,JAZF1,KLHL7,LRRC72,MACC1,MALSU1,MEOX2,MPP6,NFE2L3,NPVF,NPY,NUPL2,OSBPL3,PRPS1L1,RAPGEF5,SKAP2,SNX10,SNX13,SOSTDC1,SP4,SP8,STEAP1B,STK31,TAX1BP1,TMEM196,TOMM7,TRA2A,TRIL,TSPAN13,TWIST1,TWISTNB"
TCGA.AA.3872	7	14847988	76441371	18052	0.4	SMALL-GAIN	NONFOCAL	275	Too-Many
TCGA.AA.3814	7	15235143	35095244	7774	0.5655	SMALL-GAIN	NONFOCAL	101	Too-Many
TCGA.AA.3975	7	16812234	38303119	8362	0.4752	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AG.4009.01A	7	16899164	20795010	120	0.5806	SMALL-GAIN	NONFOCAL	12	"ABCB5,AGR3,AHR,FERD3L,HDAC9,ITGB8,MACC1,PRPS1L1,SNX13,TMEM196,TWIST1,TWISTNB"
TCGA.DY.A1DC	7	18943325	25968711	2938	0.4269	SMALL-GAIN	NONFOCAL	33	"ABCB5,C7orf31,CCDC126,CDCA7L,CYCS,DFNA5,DNAH11,FAM126A,FAM221A,FERD3L,GPNMB,HDAC9,IGF2BP3,IL6,ITGB8,KLHL7,MACC1,MALSU1,MPP6,NPVF,NPY,NUPL2,OSBPL3,RAPGEF5,SP4,SP8,STEAP1B,STK31,TMEM196,TOMM7,TRA2A,TWIST1,TWISTNB"
TCGA.AA.3941	7	20360929	49226367	10556	0.4581	SMALL-GAIN	NONFOCAL	153	Too-Many
TCGA.AZ.4684.01A	7	20698604	23792287	246	0.4225	SMALL-GAIN	NONFOCAL	19	"ABCB5,CCDC126,CDCA7L,DNAH11,FAM126A,FAM221A,GPNMB,IGF2BP3,IL6,KLHL7,MALSU1,NUPL2,RAPGEF5,SP4,SP8,STEAP1B,STK31,TOMM7,TRA2A"
TCGA.AG.4009.01A	7	21510624	26217512	279	0.6687	SMALL-GAIN	NONFOCAL	25	"C7orf31,CCDC126,CDCA7L,CYCS,DFNA5,DNAH11,FAM126A,FAM221A,GPNMB,IGF2BP3,IL6,KLHL7,MALSU1,MPP6,NFE2L3,NPVF,NPY,NUPL2,OSBPL3,RAPGEF5,SP4,STEAP1B,STK31,TOMM7,TRA2A"
TCGA.AA.3844	7	21680312	24029754	910	0.4286	SMALL-GAIN	NONFOCAL	16	"CCDC126,CDCA7L,DNAH11,FAM126A,FAM221A,GPNMB,IGF2BP3,IL6,KLHL7,MALSU1,NUPL2,RAPGEF5,STEAP1B,STK31,TOMM7,TRA2A"
TCGA.A6.2671	7	22783249	35095244	4610	0.3923	SMALL-GAIN	NONFOCAL	73	"ADCYAP1R1,AQP1,AVL9,BBS9,BMPER,C7orf31,C7orf71,CBX3,CCDC126,CCDC129,CHN2,CPVL,CREB5,CRHR2,CYCS,DFNA5,DPY19L1,EVX1,FAM126A,FAM188B,FAM221A,FKBP14,FKBP9,GARS,GGCT,GHRHR,GPNMB,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,IGF2BP3,INMT,JAZF1,KBTBD2,KLHL7,LSM5,MALSU1,MPP6,MTURN,NEUROD6,NFE2L3,NOD1,NPSR1,NPVF,NPY,NT5C3A,NUPL2,OSBPL3,PDE1C,PLEKHA8,PPP1R17,PRR15,RP9,SCRN1,SKAP2,SNX10,STK31,TAX1BP1,TOMM7,TRA2A,TRIL,WIPF3,ZNRF2"
TCGA.AA.3844	7	24059567	26692981	1236	0.4068	SMALL-GAIN	NONFOCAL	12	"C7orf31,C7orf71,CBX3,CYCS,DFNA5,HNRNPA2B1,MPP6,NFE2L3,NPVF,NPY,OSBPL3,SNX10"
TCGA.AG.A01W.01A	7	24876838	30777570	232	0.3859	SMALL-GAIN	NONFOCAL	40	"C7orf31,C7orf71,CBX3,CHN2,CPVL,CREB5,CRHR2,CYCS,EVX1,FKBP14,GARS,GGCT,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,JAZF1,MTURN,NFE2L3,NOD1,NPVF,OSBPL3,PLEKHA8,PRR15,SCRN1,SKAP2,SNX10,TAX1BP1,TRIL,WIPF3,ZNRF2"
TCGA.5M.AATE	7	25374299	159119219	36559	0.4787	SMALL-GAIN	NONFOCAL	747	Too-Many
TCGA.DY.A1DC	7	26072730	31825366	2196	0.4319	SMALL-GAIN	NONFOCAL	45	"ADCYAP1R1,AQP1,C7orf71,CBX3,CCDC129,CHN2,CPVL,CREB5,CRHR2,EVX1,FAM188B,FKBP14,GARS,GGCT,GHRHR,HIBADH,HNRNPA2B1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,INMT,JAZF1,MTURN,NEUROD6,NFE2L3,NOD1,PDE1C,PLEKHA8,PPP1R17,PRR15,SCRN1,SKAP2,SNX10,TAX1BP1,TRIL,WIPF3,ZNRF2"
TCGA.DM.A0XF	7	26199519	62671591	10880	0.5111	SMALL-GAIN	NONFOCAL	152	Too-Many
TCGA.AA.A00L.01A	7	26411474	27285475	40	0.4271	SMALL-GAIN	NONFOCAL	15	"C7orf71,EVX1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,SKAP2,SNX10"
TCGA.AA.3844	7	26823962	29400703	970	0.4395	SMALL-GAIN	NONFOCAL	20	"CHN2,CPVL,CREB5,EVX1,HIBADH,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,JAZF1,SKAP2,TAX1BP1,TRIL"
TCGA.AZ.4684.01A	7	26903919	35840753	439	0.4276	SMALL-GAIN	NONFOCAL	53	"ADCYAP1R1,AQP1,AVL9,BBS9,BMPER,CCDC129,CHN2,CPVL,CREB5,CRHR2,DPY19L1,EVX1,FAM188B,FKBP14,FKBP9,GARS,GGCT,GHRHR,HERPUD2,HIBADH,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,INMT,JAZF1,KBTBD2,LSM5,MTURN,NEUROD6,NOD1,NPSR1,NT5C3A,PDE1C,PLEKHA8,PPP1R17,PRR15,RP9,SCRN1,SEPT7,SKAP2,TAX1BP1,TBX20,TRIL,WIPF3,ZNRF2"
TCGA.AA.A00F.01A	7	27134037	27238796	22	0.6458	SMALL-GAIN	NONFOCAL	11	"HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.AG.3906.01A	7	27134037	27238796	23	0.5901	SMALL-GAIN	NONFOCAL	11	"HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.AG.3909.01A	7	27238796	29983542	82	0.604	SMALL-GAIN	NONFOCAL	12	"CHN2,CPVL,CREB5,EVX1,HIBADH,HOXA13,JAZF1,PRR15,SCRN1,TAX1BP1,TRIL,WIPF3"
TCGA.AG.A014.01A	7	27282643	97364049	2651	0.4207	SMALL-GAIN	NONFOCAL	289	Too-Many
TCGA.BM.6198	7	28299324	30855805	1066	0.41015	SMALL-GAIN	NONFOCAL	17	"CHN2,CPVL,CREB5,CRHR2,FAM188B,FKBP14,GARS,GGCT,INMT,MTURN,NOD1,PLEKHA8,PRR15,SCRN1,TRIL,WIPF3,ZNRF2"
TCGA.AA.3844	7	30450494	34330308	1421	0.4092	SMALL-GAIN	NONFOCAL	21	"ADCYAP1R1,AQP1,AVL9,BBS9,BMPER,CCDC129,CRHR2,FAM188B,FKBP9,GARS,GGCT,GHRHR,INMT,KBTBD2,LSM5,NEUROD6,NOD1,NT5C3A,PDE1C,PPP1R17,RP9"
TCGA.AG.A01N.01A	7	31592610	42187818	398	0.4859	SMALL-GAIN	NONFOCAL	37	"AMPH,ANLN,AOAH,AVL9,BBS9,BMPER,CCDC129,CDK13,DPY19L1,EEPD1,ELMO1,EPDR1,FKBP9,GLI3,GPR141,HERPUD2,INHBA,KBTBD2,KIAA0895,LSM5,MPLKIP,NME8,NPSR1,NT5C3A,PDE1C,POU6F2,PPP1R17,RALA,RP9,SEPT7,SFRP4,STARD3NL,SUGCT,TARP,TBX20,VPS41,YAE1D1"
TCGA.DY.A1DC	7	31851036	62386044	8638	0.3931	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.CK.5914.01A	7	32535267	42187818	373	0.5291	SMALL-GAIN	NONFOCAL	33	"AMPH,ANLN,AOAH,AVL9,BBS9,BMPER,CDK13,DPY19L1,EEPD1,ELMO1,EPDR1,FKBP9,GLI3,GPR141,HERPUD2,INHBA,KBTBD2,KIAA0895,MPLKIP,NME8,NPSR1,NT5C3A,POU6F2,RALA,RP9,SEPT7,SFRP4,STARD3NL,SUGCT,TARP,TBX20,VPS41,YAE1D1"
TCGA.F4.6460	7	32795567	149844638	30579	0.5358	SMALL-GAIN	NONFOCAL	637	Too-Many
TCGA.EI.6508	7	34691757	64510662	8018	0.44	SMALL-GAIN	NONFOCAL	109	Too-Many
TCGA.AA.3862.01A	7	35057441	55991250	866	0.4985	SMALL-GAIN	NONFOCAL	88	"ABCA13,ADCY1,AEBP1,AMPH,ANLN,AOAH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CDK13,COA1,COBL,DBNL,DDC,DDX56,DPY19L1,EEPD1,EGFR,ELMO1,EPDR1,FIGNL1,GCK,GLI3,GPR141,GRB10,H2AFV,HECW1,HERPUD2,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,KIAA0895,LANCL2,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NME8,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SEC61G,SEPT14,SEPT7,SFRP4,SPDYE1,STARD3NL,STK17A,SUGCT,SUN3,TARP,TBRG4,TBX20,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF713,ZPBP"
TCGA.AA.3814	7	35204549	38287926	1251	0.5639	SMALL-GAIN	NONFOCAL	13	"ANLN,AOAH,EEPD1,ELMO1,EPDR1,GPR141,HERPUD2,KIAA0895,NME8,SEPT7,SFRP4,STARD3NL,TBX20"
TCGA.A6.2679	7	35204549	76288753	10096	0.4066	SMALL-GAIN	NONFOCAL	173	Too-Many
TCGA.A6.2686	7	35204549	159119219	32889	0.3918	SMALL-GAIN	NONFOCAL	692	Too-Many
TCGA.AA.3975	7	38349103	110787969	18167	0.4651	SMALL-GAIN	NONFOCAL	391	Too-Many
TCGA.AA.3544	7	38357322	159119219	31668	0.444	SMALL-GAIN	NONFOCAL	678	Too-Many
TCGA.AY.A8YK	7	38358226	61074193	6287	0.521	SMALL-GAIN	NONFOCAL	83	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GBAS,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.AA.3842	7	38358727	76448766	8840	0.4334	SMALL-GAIN	NONFOCAL	159	Too-Many
TCGA.AA.3858	7	38370791	65648900	6720	0.3834	SMALL-GAIN	NONFOCAL	98	"ABCA13,ADCY1,AEBP1,AMPH,ASL,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,CRCP,DBNL,DDC,DDX56,EGFR,ERV3-1,FIGNL1,GBAS,GCK,GLI3,GRB10,GUSB,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VKORC1L1,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZPBP"
TCGA.AA.A02Y	7	38370791	84858777	11554	0.4596	SMALL-GAIN	NONFOCAL	177	Too-Many
TCGA.AA.3814	7	38370791	159119219	31670	0.5713	SMALL-GAIN	NONFOCAL	678	Too-Many
TCGA.AA.3693	7	38398046	105585665	16535	0.4638	SMALL-GAIN	NONFOCAL	367	Too-Many
TCGA.AA.3688	7	38402495	61987337	6286	0.497	SMALL-GAIN	NONFOCAL	83	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CDK13,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GBAS,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MPLKIP,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,POU6F2,PPIA,PSMA2,PSPH,PURB,RALA,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VPS41,VSTM2A,VWC2,YAE1D1,YKT6,ZMIZ2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.A6.3807	7	38402495	66320478	6742	0.4973	SMALL-GAIN	NONFOCAL	101	Too-Many
TCGA.AA.3667	7	38402495	133967751	23910	0.499	SMALL-GAIN	NONFOCAL	490	Too-Many
TCGA.AA.3696	7	38404970	51948107	4598	0.4604	SMALL-GAIN	NONFOCAL	65	"ABCA13,ADCY1,AEBP1,AMPH,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CDK13,COA1,COBL,DBNL,DDC,DDX56,FIGNL1,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,MPLKIP,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POU6F2,PPIA,PSMA2,PURB,RALA,RAMP3,SPDYE1,STK17A,SUGCT,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VPS41,VWC2,YAE1D1,YKT6,ZMIZ2,ZPBP"
TCGA.AA.3666	7	38408478	71408813	8291	0.3874	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AA.3680	7	38408478	102375278	15576	0.4149	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3855	7	38408478	142267509	26424	0.4541	SMALL-GAIN	NONFOCAL	555	Too-Many
TCGA.AA.3685	7	38408478	147713979	27996	0.577	SMALL-GAIN	NONFOCAL	598	Too-Many
TCGA.F4.6459	7	40470218	61858374	5640	0.649	SMALL-GAIN	NONFOCAL	76	"ABCA13,ADCY1,AEBP1,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,CCT6A,CHCHD2,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GBAS,GCK,GLI3,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,INHBA,LANCL2,MRPL32,MRPS17,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,NUPR1L,OGDH,PGAM2,PHKG1,PKD1L1,POLD2,POLM,POM121L12,PPIA,PSMA2,PSPH,PURB,RAMP3,SEC61G,SEPT14,SPDYE1,STK17A,SUGCT,SUMF2,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VOPP1,VSTM2A,VWC2,YKT6,ZMIZ2,ZNF479,ZNF713,ZNF716,ZPBP"
TCGA.AA.A01Z	7	41499272	45814585	1274	0.4837	SMALL-GAIN	NONFOCAL	38	"ADCY1,AEBP1,BLVRA,C7orf25,CAMK2B,CCM2,COA1,DBNL,DDX56,GCK,GLI3,H2AFV,HECW1,INHBA,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,POLD2,POLM,PPIA,PSMA2,PURB,RAMP3,SPDYE1,STK17A,TBRG4,TMED4,UBE2D4,URGCP,URGCP-MRPS24,YKT6,ZMIZ2"
TCGA.AA.3966	7	42399863	55412404	4539	0.4661	SMALL-GAIN	NONFOCAL	59	"ABCA13,ADCY1,AEBP1,BLVRA,C7orf25,C7orf57,C7orf65,C7orf69,C7orf72,CAMK2B,CCM2,COA1,COBL,DBNL,DDC,DDX56,EGFR,FIGNL1,GCK,GRB10,H2AFV,HECW1,HUS1,IGFBP1,IGFBP3,IKZF1,MRPL32,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,PKD1L1,POLD2,POLM,POM121L12,PPIA,PSMA2,PURB,RAMP3,SEC61G,SPDYE1,STK17A,SUN3,TBRG4,TMED4,TNS3,UBE2D4,UPP1,URGCP,URGCP-MRPS24,VSTM2A,VWC2,YKT6,ZMIZ2,ZPBP"
TCGA.AA.3811	7	43086632	45933005	681	0.5119	SMALL-GAIN	NONFOCAL	34	"ADCY1,AEBP1,BLVRA,CAMK2B,CCM2,COA1,DBNL,DDX56,GCK,H2AFV,HECW1,IGFBP1,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,POLD2,POLM,PPIA,PURB,RAMP3,SPDYE1,STK17A,TBRG4,TMED4,UBE2D4,URGCP,URGCP-MRPS24,YKT6,ZMIZ2"
TCGA.AA.3982	7	43761589	45672822	399	0.5038	SMALL-GAIN	NONFOCAL	31	"ADCY1,AEBP1,BLVRA,CAMK2B,CCM2,COA1,DBNL,DDX56,GCK,H2AFV,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,POLD2,POLM,PPIA,PURB,RAMP3,SPDYE1,TBRG4,TMED4,UBE2D4,URGCP,URGCP-MRPS24,YKT6,ZMIZ2"
TCGA.AA.3844	7	43767097	45965020	457	0.6364	SMALL-GAIN	NONFOCAL	33	"ADCY1,AEBP1,BLVRA,CAMK2B,CCM2,COA1,DBNL,DDX56,GCK,H2AFV,IGFBP1,IGFBP3,MRPS24,MYL7,MYO1G,NACAD,NPC1L1,NUDCD3,OGDH,PGAM2,POLD2,POLM,PPIA,PURB,RAMP3,SPDYE1,TBRG4,TMED4,UBE2D4,URGCP,URGCP-MRPS24,YKT6,ZMIZ2"
TCGA.AM.5820	7	45679020	149583590	26303	0.4199	SMALL-GAIN	NONFOCAL	570	Too-Many
TCGA.AG.A01W.01A	7	47836109	54792643	212	0.4294	SMALL-GAIN	NONFOCAL	17	"ABCA13,C7orf57,C7orf69,C7orf72,COBL,DDC,FIGNL1,GRB10,HUS1,IKZF1,PKD1L1,POM121L12,SUN3,UPP1,VSTM2A,VWC2,ZPBP"
TCGA.DM.A1D6	7	48605607	65971058	3388	0.4666	SMALL-GAIN	NONFOCAL	43	"ABCA13,ASL,C7orf72,CCT6A,CHCHD2,COBL,CRCP,DDC,EGFR,ERV3-1,FIGNL1,GBAS,GRB10,GUSB,IKZF1,LANCL2,MRPS17,NUPR1L,PHKG1,POM121L12,PSPH,SEC61G,SEPT14,SUMF2,TPST1,VKORC1L1,VOPP1,VSTM2A,VWC2,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZPBP"
TCGA.AA.3495	7	49788989	64894136	2888	0.6629	SMALL-GAIN	NONFOCAL	37	"C7orf72,CCT6A,CHCHD2,COBL,DDC,EGFR,ERV3-1,FIGNL1,GBAS,GRB10,IKZF1,LANCL2,MRPS17,NUPR1L,PHKG1,POM121L12,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,VWC2,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZPBP"
TCGA.CI.6621	7	50119501	56088000	2164	0.5498	SMALL-GAIN	NONFOCAL	18	"C7orf72,COBL,DDC,EGFR,FIGNL1,GBAS,GRB10,IKZF1,LANCL2,MRPS17,POM121L12,PSPH,SEC61G,SEPT14,VOPP1,VSTM2A,ZNF713,ZPBP"
TCGA.AA.A00F.01A	7	50562992	56120070	89	0.4523	SMALL-GAIN	NONFOCAL	15	"CCT6A,COBL,DDC,EGFR,GBAS,GRB10,LANCL2,MRPS17,POM121L12,PSPH,SEC61G,SEPT14,VOPP1,VSTM2A,ZNF713"
TCGA.AA.A01Z	7	52831458	57878852	1271	0.4826	SMALL-GAIN	NONFOCAL	18	"CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,POM121L12,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,ZNF479,ZNF713,ZNF716"
TCGA.AF.A56K	7	53102038	159119219	26484	0.506	SMALL-GAIN	NONFOCAL	613	Too-Many
TCGA.AA.3841	7	53190093	57537135	1112	0.651	SMALL-GAIN	NONFOCAL	17	"CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,ZNF479,ZNF713,ZNF716"
TCGA.DC.6157	7	53239217	159119219	26242	0.4641	SMALL-GAIN	NONFOCAL	612	Too-Many
TCGA.DM.A1D4	7	53593510	159119219	26390	0.4688	SMALL-GAIN	NONFOCAL	612	Too-Many
TCGA.F5.6812	7	53824781	61888127	944	0.437	SMALL-GAIN	NONFOCAL	17	"CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,ZNF479,ZNF713,ZNF716"
TCGA.AA.3844	7	54652510	57565523	674	0.4886	SMALL-GAIN	NONFOCAL	16	"CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,NUPR1L,PHKG1,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,ZNF479,ZNF713,ZNF716"
TCGA.EI.6514	7	54694900	159119219	26030	0.6171	SMALL-GAIN	NONFOCAL	611	Too-Many
TCGA.AA.3696	7	54932993	159119219	25960	0.4551	SMALL-GAIN	NONFOCAL	610	Too-Many
TCGA.A6.6652	7	55291725	159119219	25810	0.4415	SMALL-GAIN	NONFOCAL	609	Too-Many
TCGA.A6.3810.01A	7	55588708	57529463	75	0.5385	SMALL-GAIN	NONFOCAL	13	"CCT6A,CHCHD2,GBAS,MRPS17,NUPR1L,PHKG1,PSPH,SEPT14,SUMF2,VOPP1,ZNF479,ZNF713,ZNF716"
TCGA.AG.3611.01A	7	55872899	65821744	125	0.5746	SMALL-GAIN	NONFOCAL	28	"ASL,CCT6A,CHCHD2,CRCP,ERV3-1,GBAS,GUSB,MRPS17,NUPR1L,PHKG1,PSPH,SEPT14,SUMF2,TPST1,VKORC1L1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AG.A00Y.01A	7	55910623	77033807	648	0.459	SMALL-GAIN	NONFOCAL	91	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GBAS,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POMZP3,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SEPT14,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AA.3967.01A	7	56006648	75686673	573	0.6756	SMALL-GAIN	NONFOCAL	79	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CCT6A,CHCHD2,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,EIF4H,ELN,ERV3-1,FKBP6,FZD9,GATSL2,GBAS,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,KCTD7,LAT2,LIMK1,MDH2,MLXIPL,MRPS17,NCF1,NSUN5,NUPR1L,PHKG1,POM121,POM121C,POR,PSPH,RABGEF1,RFC2,RHBDD2,SBDS,SPDYE5,STX1A,STYXL1,SUMF2,TBL2,TMEM120A,TMEM248,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,ZNF107,ZNF117,ZNF138,ZNF273,ZNF479,ZNF679,ZNF680,ZNF713,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.A00F.01A	7	56142248	64168080	30	0.4359	SMALL-GAIN	NONFOCAL	12	"CHCHD2,NUPR1L,PHKG1,SUMF2,ZNF107,ZNF479,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736"
TCGA.DM.A28F	7	57448228	68279929	1136	0.547	SMALL-GAIN	NONFOCAL	22	"ASL,CRCP,ERV3-1,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.3509.01A	7	57528393	64864152	46	0.5902	SMALL-GAIN	NONFOCAL	12	"ERV3-1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF716,ZNF727,ZNF735,ZNF736,ZNF92"
TCGA.AA.3844	7	62453695	77881529	2925	0.4726	SMALL-GAIN	NONFOCAL	84	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,CRCP,DNAJC30,DTX2,EIF4H,ELN,ERV3-1,FGL2,FKBP6,FZD9,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,GUSB,HIP1,HSPB1,KCTD7,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RABGEF1,RFC2,RHBDD2,RSBN1L,SBDS,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM248,TMEM60,TPST1,TRIM50,TRIM73,TRIM74,TYW1,TYW1B,UPK3B,VKORC1L1,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF727,ZNF735,ZNF736,ZNF92,ZP3"
TCGA.AG.3909.01A	7	64291277	70231063	107	0.5405	SMALL-GAIN	NONFOCAL	16	"ASL,AUTS2,CRCP,ERV3-1,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,VKORC1L1,ZNF117,ZNF138,ZNF273,ZNF92"
TCGA.AA.A010.01A	7	64838813	72298572	141	0.5544	SMALL-GAIN	NONFOCAL	15	"ASL,AUTS2,CALN1,CRCP,GUSB,KCTD7,RABGEF1,SBDS,TMEM248,TPST1,TYW1,TYW1B,VKORC1L1,WBSCR17,ZNF92"
TCGA.AA.A00F.01A	7	65556946	73666742	259	0.5042	SMALL-GAIN	NONFOCAL	35	"ABHD11,ASL,AUTS2,BAZ1B,BCL7B,CALN1,CLDN3,CLDN4,CRCP,DNAJC30,EIF4H,ELN,FKBP6,FZD9,KCTD7,LAT2,LIMK1,MLXIPL,NSUN5,POM121,RABGEF1,RFC2,SBDS,STX1A,TBL2,TMEM248,TPST1,TRIM50,TYW1,TYW1B,VPS37D,WBSCR17,WBSCR22,WBSCR27,WBSCR28"
TCGA.AG.3592	7	65675127	159119219	24938	0.662	SMALL-GAIN	NONFOCAL	580	Too-Many
TCGA.DM.A1D6	7	66305021	153400814	22884	0.5177	SMALL-GAIN	NONFOCAL	557	Too-Many
TCGA.CM.5862	7	67436823	159119219	24561	0.4051	SMALL-GAIN	NONFOCAL	574	Too-Many
TCGA.AA.3982	7	70432690	76216383	867	0.5963	SMALL-GAIN	NONFOCAL	53	"ABHD11,BAZ1B,BCL7B,CALN1,CCL24,CCL26,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,FKBP6,FZD9,GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,LAT2,LIMK1,MDH2,MLXIPL,NCF1,NSUN5,POM121,POM121C,POR,RFC2,RHBDD2,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TRIM50,TRIM73,TRIM74,TYW1B,UPK3B,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.D5.6537	7	70838142	159119219	23396	0.4593	SMALL-GAIN	NONFOCAL	573	Too-Many
TCGA.AG.3611.01A	7	70880866	77762158	381	0.5601	SMALL-GAIN	NONFOCAL	62	"ABHD11,BAZ1B,BCL7B,CALN1,CCDC146,CCL24,CCL26,CLDN3,CLDN4,CLIP2,DNAJC30,DTX2,EIF4H,ELN,FGL2,FKBP6,FZD9,GATSL2,GSAP,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,HSPB1,LAT2,LIMK1,MAGI2,MDH2,MLXIPL,NCF1,NSUN5,PHTF2,POM121,POM121C,POMZP3,POR,PTPN12,RFC2,RHBDD2,RSBN1L,SPDYE5,SRRM3,SSC4D,STX1A,STYXL1,TBL2,TMEM120A,TMEM60,TRIM50,TRIM73,TRIM74,TYW1B,UPK3B,VPS37D,WBSCR16,WBSCR17,WBSCR22,WBSCR27,WBSCR28,YWHAG,ZP3"
TCGA.CI.6621	7	72987353	73416182	39	0.4387	SMALL-GAIN	NONFOCAL	11	"ABHD11,CLDN3,CLDN4,DNAJC30,MLXIPL,STX1A,TBL2,VPS37D,WBSCR22,WBSCR27,WBSCR28"
TCGA.A6.3808.01A	7	73084325	74133178	156	0.3954	SMALL-GAIN	NONFOCAL	17	"ABHD11,CLDN3,CLDN4,CLIP2,DNAJC30,EIF4H,ELN,GTF2I,GTF2IRD1,LAT2,LIMK1,RFC2,STX1A,VPS37D,WBSCR22,WBSCR27,WBSCR28"
TCGA.AA.A00F.01A	7	73927122	75210502	84	0.5801	SMALL-GAIN	NONFOCAL	12	"GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,NCF1,POM121C,SPDYE5,TRIM73,TRIM74,WBSCR16"
TCGA.AG.A01J.01A	7	76024522	96338936	930	0.4532	SMALL-GAIN	NONFOCAL	79	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,DTX2,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,POMZP3,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,SSC4D,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,TMEM60,UPK3B,ZNF804B,ZP3"
TCGA.AA.A004.01A	7	76058800	96338936	918	0.3886	SMALL-GAIN	NONFOCAL	78	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,DTX2,DYNC1I1,FAM133B,FGL2,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,POMZP3,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,TMEM60,UPK3B,ZNF804B,ZP3"
TCGA.AG.A01N.01A	7	76062193	79846582	134	0.3956	SMALL-GAIN	NONFOCAL	13	"CCDC146,DTX2,FGL2,GNAI1,GSAP,MAGI2,PHTF2,POMZP3,PTPN12,RSBN1L,TMEM60,UPK3B,ZP3"
TCGA.AZ.6598	7	76607294	159119219	22794	0.4785	SMALL-GAIN	NONFOCAL	519	Too-Many
TCGA.AG.A01W.01A	7	76754015	91969103	667	0.3821	SMALL-GAIN	NONFOCAL	46	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,C7orf62,CACNA2D1,CCDC146,CD36,CDK14,CFAP69,CLDN12,CROT,CYP51A1,DBF4,DMTF1,FGL2,FZD1,GNAI1,GNAT3,GRM3,GSAP,GTPBP10,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PHTF2,PTPN12,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,TMEM60,ZNF804B"
TCGA.AA.A029.01A	7	76888261	97800802	933	0.5296	SMALL-GAIN	NONFOCAL	80	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,ASNS,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX5,DLX6,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LMTK2,LRRD1,MAGI2,MTERF1,OCM2,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SDHAF3,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TAC1,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.AA.A02H.01A	7	76908015	96338936	894	0.6198	SMALL-GAIN	NONFOCAL	73	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.AA.A017.01A	7	76908015	96636928	900	0.5128	SMALL-GAIN	NONFOCAL	74	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,ASB4,BET1,C7orf62,C7orf76,CACNA2D1,CALCR,CASD1,CCDC132,CCDC146,CD36,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CROT,CYP51A1,DBF4,DLX6,DMTF1,DYNC1I1,FAM133B,FZD1,GATAD1,GNAI1,GNAT3,GNG11,GNGT1,GRM3,GSAP,GTPBP10,HEPACAM2,HGF,KIAA1324L,KRIT1,LRRD1,MAGI2,MTERF1,PCLO,PDK4,PEG10,PEX1,PHTF2,PON1,PON2,PON3,PPP1R9A,PTPN12,RBM48,RSBN1L,RUNDC3B,SAMD9,SAMD9L,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SGCE,SHFM1,SLC25A13,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,TMEM243,TMEM60,ZNF804B"
TCGA.A6.3808.01A	7	76923933	90741809	507	0.5755	SMALL-GAIN	NONFOCAL	38	"ABCB1,ABCB4,ADAM22,C7orf62,CACNA2D1,CCDC146,CD36,CDK14,CFAP69,CLDN12,CROT,DBF4,DMTF1,GNAI1,GNAT3,GRM3,GSAP,GTPBP10,HGF,KIAA1324L,MAGI2,PCLO,PHTF2,PTPN12,RSBN1L,RUNDC3B,SEMA3A,SEMA3C,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TMEM243,TMEM60,ZNF804B"
TCGA.AA.3509.01A	7	77756466	87027813	238	0.5897	SMALL-GAIN	NONFOCAL	16	"CACNA2D1,CD36,CROT,DMTF1,GNAI1,GNAT3,GRM3,HGF,KIAA1324L,MAGI2,PCLO,SEMA3A,SEMA3C,SEMA3D,SEMA3E,TMEM243"
TCGA.AH.6644	7	78024415	159119219	22297	0.4564	SMALL-GAIN	NONFOCAL	512	Too-Many
TCGA.NH.A6GA	7	79750612	138500461	15555	0.4281	SMALL-GAIN	NONFOCAL	351	Too-Many
TCGA.AG.A01N.01A	7	80088009	87168556	264	0.6622	SMALL-GAIN	NONFOCAL	16	"ABCB1,ABCB4,CACNA2D1,CD36,CROT,DMTF1,GNAT3,GRM3,HGF,KIAA1324L,PCLO,SEMA3A,SEMA3C,SEMA3D,SEMA3E,TMEM243"
TCGA.AA.A01C.01A	7	81579669	87479143	241	0.5898	SMALL-GAIN	NONFOCAL	14	"ABCB1,ABCB4,CACNA2D1,CROT,DMTF1,GRM3,KIAA1324L,PCLO,RUNDC3B,SEMA3A,SEMA3D,SEMA3E,SLC25A40,TMEM243"
TCGA.CK.4948.01B	7	81603722	87505974	242	0.3808	SMALL-GAIN	NONFOCAL	15	"ABCB1,ABCB4,CACNA2D1,CROT,DBF4,DMTF1,GRM3,KIAA1324L,PCLO,RUNDC3B,SEMA3A,SEMA3D,SEMA3E,SLC25A40,TMEM243"
TCGA.AA.3495	7	83014103	88021473	1224	0.6331	SMALL-GAIN	NONFOCAL	16	"ABCB1,ABCB4,ADAM22,CROT,DBF4,DMTF1,GRM3,KIAA1324L,RUNDC3B,SEMA3A,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP4,TMEM243"
TCGA.A6.6650	7	84131878	159119219	18592	0.6187	SMALL-GAIN	NONFOCAL	502	Too-Many
TCGA.AA.A02Y	7	84885922	159119219	20067	0.461	SMALL-GAIN	NONFOCAL	501	Too-Many
TCGA.DY.A1DC	7	85222044	89622627	1105	0.4406	SMALL-GAIN	NONFOCAL	15	"ABCB1,ABCB4,ADAM22,C7orf62,CROT,DBF4,DMTF1,GRM3,KIAA1324L,RUNDC3B,SLC25A40,SRI,STEAP4,TMEM243,ZNF804B"
TCGA.AY.A54L.01A	7	86394492	100320593	1219	0.6451	SMALL-GAIN	NONFOCAL	134	Too-Many
TCGA.AZ.4684.01A	7	87031385	92354893	354	0.6388	SMALL-GAIN	NONFOCAL	28	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,C7orf62,CDK14,CDK6,CFAP69,CLDN12,CYP51A1,DBF4,FAM133B,FZD1,GATAD1,GTPBP10,KRIT1,LRRD1,MTERF1,PEX1,RBM48,RUNDC3B,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,ZNF804B"
TCGA.AY.4070	7	87065686	94586676	1922	0.626	SMALL-GAIN	NONFOCAL	42	"ABCB1,ABCB4,ADAM22,AKAP9,ANKIB1,BET1,C7orf62,CALCR,CASD1,CCDC132,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CYP51A1,DBF4,FAM133B,FZD1,GATAD1,GNG11,GNGT1,GTPBP10,HEPACAM2,KRIT1,LRRD1,MTERF1,PEG10,PEX1,PPP1R9A,RBM48,RUNDC3B,SAMD9,SAMD9L,SGCE,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,ZNF804B"
TCGA.AA.3509.01A	7	87145778	91695704	198	0.385	SMALL-GAIN	NONFOCAL	18	"ABCB1,ADAM22,AKAP9,C7orf62,CDK14,CFAP69,CLDN12,DBF4,FZD1,GTPBP10,MTERF1,RUNDC3B,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,ZNF804B"
TCGA.AG.A01N.01A	7	87170631	92138584	276	0.4012	SMALL-GAIN	NONFOCAL	24	"ABCB1,ADAM22,AKAP9,ANKIB1,C7orf62,CDK14,CFAP69,CLDN12,CYP51A1,DBF4,FZD1,GATAD1,GTPBP10,KRIT1,LRRD1,MTERF1,PEX1,RUNDC3B,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,ZNF804B"
TCGA.AA.A01T	7	87311679	94968340	1977	0.6597	SMALL-GAIN	NONFOCAL	42	"ABCB1,ADAM22,AKAP9,ANKIB1,BET1,C7orf62,CALCR,CASD1,CCDC132,CDK14,CDK6,CFAP69,CLDN12,COL1A2,CYP51A1,DBF4,FAM133B,FZD1,GATAD1,GNG11,GNGT1,GTPBP10,HEPACAM2,KRIT1,LRRD1,MTERF1,PEG10,PEX1,PON1,PPP1R9A,RBM48,RUNDC3B,SAMD9,SAMD9L,SGCE,SLC25A40,SRI,STEAP1,STEAP2,STEAP4,TFPI2,ZNF804B"
TCGA.F5.6464	7	88379809	110178547	5625	0.5336	SMALL-GAIN	NONFOCAL	199	Too-Many
TCGA.DY.A1DC	7	89629173	107767516	4497	0.4274	SMALL-GAIN	NONFOCAL	192	Too-Many
TCGA.CM.5860	7	89909981	110409360	5215	0.6243	SMALL-GAIN	NONFOCAL	196	Too-Many
TCGA.DT.5265	7	91046992	159119219	18382	0.3816	SMALL-GAIN	NONFOCAL	479	Too-Many
TCGA.AA.3842	7	91177610	103463997	2563	0.4483	SMALL-GAIN	NONFOCAL	161	Too-Many
TCGA.AA.3495	7	91228685	108677074	4287	0.6452	SMALL-GAIN	NONFOCAL	190	Too-Many
TCGA.AG.A01W.01A	7	92044838	93995371	127	0.4929	SMALL-GAIN	NONFOCAL	14	"BET1,CALCR,CCDC132,CDK6,FAM133B,GATAD1,GNG11,GNGT1,HEPACAM2,PEX1,RBM48,SAMD9,SAMD9L,TFPI2"
TCGA.AA.3509.01A	7	92403958	95705361	204	0.5005	SMALL-GAIN	NONFOCAL	21	"ASB4,BET1,CALCR,CASD1,CCDC132,CDK6,COL1A2,DYNC1I1,GNG11,GNGT1,HEPACAM2,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SAMD9,SAMD9L,SGCE,TFPI2"
TCGA.A6.3808.01A	7	92979137	95606807	163	0.4239	SMALL-GAIN	NONFOCAL	17	"ASB4,BET1,CALCR,CASD1,CCDC132,COL1A2,DYNC1I1,GNG11,GNGT1,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SGCE,TFPI2"
TCGA.DM.A0XD	7	93532408	95313663	488	0.439	SMALL-GAIN	NONFOCAL	13	"ASB4,BET1,CASD1,COL1A2,GNG11,GNGT1,PDK4,PEG10,PON1,PON2,PON3,PPP1R9A,SGCE"
TCGA.AG.A01W.01A	7	94782554	97207045	94	0.5528	SMALL-GAIN	NONFOCAL	13	"ASB4,C7orf76,DLX5,DLX6,DYNC1I1,PDK4,PON1,PON2,PON3,PPP1R9A,SDHAF3,SHFM1,SLC25A13"
TCGA.AZ.4684.01A	7	95705361	105752850	1121	0.3836	SMALL-GAIN	NONFOCAL	140	Too-Many
TCGA.AG.3611.01A	7	96746999	106781244	901	0.4306	SMALL-GAIN	NONFOCAL	138	Too-Many
TCGA.AA.3982	7	97465095	99171448	326	0.5537	SMALL-GAIN	NONFOCAL	25	"ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,CPSF4,FAM200A,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SMURF1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789"
TCGA.AA.3850	7	97465095	99229767	333	0.40465	SMALL-GAIN	NONFOCAL	27	"ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,BAIAP2L1,BHLHA15,BRI3,BUD31,CPSF4,FAM200A,GS1-259H13.2,KPNA7,LMTK2,NPTX2,OCM2,PDAP1,PTCD1,SMURF1,TECPR1,TMEM130,TRRAP,ZKSCAN5,ZNF394,ZNF655,ZNF789,ZSCAN25"
TCGA.AA.3967.01A	7	97873836	103230002	830	0.6205	SMALL-GAIN	NONFOCAL	119	Too-Many
TCGA.AG.A00Y.01A	7	97936963	99700281	269	0.5072	SMALL-GAIN	NONFOCAL	36	"AP4M1,ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BUD31,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,FAM200A,GJC3,GS1-259H13.2,KPNA7,MCM7,NPTX2,OR2AE1,PDAP1,PTCD1,SMURF1,TMEM130,TRIM4,TRRAP,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AZ.4308	7	97979796	100017453	346	0.3966	SMALL-GAIN	NONFOCAL	50	"AP4M1,ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BUD31,C7orf43,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,FAM200A,GAL3ST4,GATS,GJC3,GPC2,GS1-259H13.2,KPNA7,LAMTOR4,MBLAC1,MCM7,NPTX2,OR2AE1,PDAP1,PILRA,PILRB,PTCD1,PVRIG,SMURF1,SPDYE3,STAG3,TAF6,TMEM130,TRIM4,TRRAP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.CI.6621	7	98288471	99807472	275	0.4933	SMALL-GAIN	NONFOCAL	43	"AP4M1,ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,AZGP1,BUD31,C7orf43,CNPY4,COPS6,CPSF4,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,FAM200A,GAL3ST4,GATS,GJC3,GPC2,GS1-259H13.2,KPNA7,LAMTOR4,MBLAC1,MCM7,OR2AE1,PDAP1,PTCD1,SMURF1,STAG3,TAF6,TMEM130,TRIM4,TRRAP,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZSCAN21,ZSCAN25"
TCGA.AG.3891.01A	7	98659355	99144292	61	0.4345	SMALL-GAIN	NONFOCAL	14	"ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,BUD31,CPSF4,FAM200A,KPNA7,PDAP1,PTCD1,SMURF1,ZKSCAN5,ZNF394,ZNF789"
TCGA.AA.A00F.01A	7	99027163	107204210	756	0.4321	SMALL-GAIN	NONFOCAL	123	Too-Many
TCGA.AA.3862.01A	7	99123389	99792867	163	0.4448	SMALL-GAIN	NONFOCAL	28	"AP4M1,AZGP1,C7orf43,CNPY4,COPS6,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,FAM200A,GAL3ST4,GJC3,GPC2,GS1-259H13.2,LAMTOR4,MBLAC1,MCM7,OR2AE1,STAG3,TAF6,TRIM4,ZKSCAN1,ZKSCAN5,ZNF3,ZNF655,ZSCAN21,ZSCAN25"
TCGA.AA.3982	7	99385682	103195283	532	0.5643	SMALL-GAIN	NONFOCAL	92	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,AP4M1,ARMC10,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CUX1,CYP3A43,DNAJC2,EPHB4,EPO,FAM185A,FBXL13,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,LRRC17,LRWD1,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAPEPLD,NAT16,NYAP1,OR2AE1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,POP7,PPP1R35,PRKRIP1,PSMC2,PVRIG,RASA4,RASA4B,RELN,SAP25,SERPINE1,SH2B2,SLC12A9,SLC26A5,SPDYE2,SPDYE2B,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,UPK3BL,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AA.3850	7	99388999	102091734	385	0.45815	SMALL-GAIN	NONFOCAL	72	"ACHE,ACTL6B,AGFG2,AP1S1,AP4M1,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CUX1,CYP3A43,EPHB4,EPO,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAT16,NYAP1,OR2AE1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,POP7,PPP1R35,PRKRIP1,PVRIG,SAP25,SERPINE1,SH2B2,SLC12A9,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AA.3866	7	99415404	101176897	213	0.4476	SMALL-GAIN	NONFOCAL	65	"ACHE,ACTL6B,AGFG2,AP1S1,AP4M1,AZGP1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CYP3A43,EPHB4,EPO,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,IFT22,LAMTOR4,LRCH4,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,NAT16,NYAP1,OR2AE1,PCOLCE,PILRA,PILRB,PLOD3,POP7,PPP1R35,PVRIG,SAP25,SERPINE1,SLC12A9,SPDYE3,SRRT,STAG3,TAF6,TFR2,TRIM4,TRIM56,TRIP6,TSC22D4,UFSP1,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZNF3,ZNHIT1,ZSCAN21"
TCGA.AG.A00Y.01A	7	99710949	102113102	378	0.6779	SMALL-GAIN	NONFOCAL	63	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,CUX1,EPHB4,EPO,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GNB2,GPC2,IFT22,LAMTOR4,LOC100289561,LRCH4,LRWD1,MBLAC1,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAT16,NYAP1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,POP7,PPP1R35,PRKRIP1,PVRIG,SAP25,SERPINE1,SH2B2,SLC12A9,SPDYE3,SPDYE6,SRRT,STAG3,TAF6,TFR2,TRIM56,TRIP6,TSC22D4,UFSP1,VGF,ZAN,ZASP,ZCWPW1,ZNHIT1"
TCGA.AA.3862.01A	7	99797809	102952491	437	0.4257	SMALL-GAIN	NONFOCAL	70	"ACHE,ACTL6B,AGFG2,ALKBH4,AP1S1,ARMC10,C7orf61,CLDN15,COL26A1,CUX1,EPHB4,EPO,FAM185A,FBXL13,FBXO24,FIS1,GATS,GIGYF1,GNB2,IFT22,LOC100289561,LRCH4,LRRC17,LRWD1,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAPEPLD,NAT16,NYAP1,ORAI2,PCOLCE,PILRA,PILRB,PLOD3,PMPCB,POLR2J,POLR2J2,POLR2J3,POP7,PPP1R35,PRKRIP1,PVRIG,RASA4,RASA4B,SAP25,SERPINE1,SH2B2,SLC12A9,SPDYE2,SPDYE2B,SPDYE3,SPDYE6,SRRT,STAG3,TFR2,TRIM56,TRIP6,TSC22D4,UFSP1,UPK3BL,VGF,ZAN,ZASP,ZCWPW1,ZNHIT1"
TCGA.AY.A54L.01A	7	100344120	121636384	1125	0.6564	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.AG.A014.01A	7	100490739	127725711	1145	0.4051	SMALL-GAIN	NONFOCAL	130	Too-Many
TCGA.A6.3808.01A	7	100691228	101713597	83	0.4586	SMALL-GAIN	NONFOCAL	15	"AP1S1,CLDN15,COL26A1,CUX1,FIS1,IFT22,MOGAT3,MUC17,MYL10,NAT16,PLOD3,SERPINE1,TRIM56,VGF,ZNHIT1"
TCGA.AG.A00C.01A	7	100696572	100962174	49	0.3878	SMALL-GAIN	NONFOCAL	12	"AP1S1,CLDN15,FIS1,IFT22,MOGAT3,MUC17,NAT16,PLOD3,SERPINE1,TRIM56,VGF,ZNHIT1"
TCGA.AG.A01W.01A	7	101245996	104892945	292	0.3839	SMALL-GAIN	NONFOCAL	31	"ALKBH4,ARMC10,CUX1,DNAJC2,FAM185A,FBXL13,KMT2E,LHFPL3,LOC100289561,LRRC17,LRWD1,MYL10,NAPEPLD,ORAI2,ORC5,PMPCB,POLR2J,POLR2J2,POLR2J3,PRKRIP1,PSMC2,RASA4,RASA4B,RELN,SH2B2,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,SRPK2,UPK3BL"
TCGA.AG.A01N.01A	7	103014794	129932958	1208	0.4245	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AA.3842	7	103479068	110439911	2255	0.4401	SMALL-GAIN	NONFOCAL	31	"ATXN7L1,BCAP29,C7orf66,CBLL1,CCDC71L,CDHR3,COG5,DLD,DNAJB9,DUS4L,GPR22,HBP1,IMMP2L,KMT2E,LAMB1,LAMB4,LHFPL3,NAMPT,NRCAM,ORC5,PIK3CG,PNPLA8,PRKAR2B,PUS7,RELN,RINT1,SLC26A3,SLC26A4,SRPK2,SYPL1,THAP5"
TCGA.AA.3967.01A	7	103835544	106797365	130	0.4387	SMALL-GAIN	NONFOCAL	13	"ATXN7L1,CCDC71L,CDHR3,KMT2E,LHFPL3,NAMPT,ORC5,PIK3CG,PRKAR2B,PUS7,RINT1,SRPK2,SYPL1"
TCGA.AA.3854	7	104676521	142267509	10181	0.5621	SMALL-GAIN	NONFOCAL	193	Too-Many
TCGA.AY.4070	7	105153241	109308528	1397	0.4275	SMALL-GAIN	NONFOCAL	25	"ATXN7L1,BCAP29,C7orf66,CBLL1,CCDC71L,CDHR3,COG5,DLD,DNAJB9,DUS4L,GPR22,HBP1,LAMB1,LAMB4,NAMPT,NRCAM,PIK3CG,PNPLA8,PRKAR2B,PUS7,RINT1,SLC26A3,SLC26A4,SYPL1,THAP5"
TCGA.AA.3693	7	105588638	142338189	9943	0.4545	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.A6.3808.01A	7	105925226	128032985	816	0.5053	SMALL-GAIN	NONFOCAL	82	"AASS,ANKRD7,ARF5,ASB15,ASZ1,BCAP29,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CCDC71L,CFTR,COG5,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,DUS4L,FAM3C,FEZF1,FOXP2,FSCN3,GCC1,GPR22,GPR37,GPR85,GRM8,HBP1,HYAL4,IFRD1,IMMP2L,IMPDH1,ING3,IQUB,KCND2,LAMB1,LAMB4,LEP,LMOD2,LRRC4,LRRN3,LSM8,LSMEM1,MDFIC,MET,NAMPT,NDUFA5,NRCAM,PAX4,PIK3CG,PNPLA8,POT1,PPP1R3A,PRKAR2B,PRRT4,PTPRZ1,RBM28,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SND1,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AA.3524	7	106106337	110294962	1252	0.4676	SMALL-GAIN	NONFOCAL	19	"BCAP29,C7orf66,CBLL1,CCDC71L,COG5,DLD,DNAJB9,DUS4L,GPR22,HBP1,LAMB1,LAMB4,NRCAM,PIK3CG,PNPLA8,PRKAR2B,SLC26A3,SLC26A4,THAP5"
TCGA.AA.3844	7	106192960	107871844	503	0.4504	SMALL-GAIN	NONFOCAL	15	"BCAP29,CBLL1,CCDC71L,COG5,DLD,DUS4L,GPR22,HBP1,LAMB1,LAMB4,NRCAM,PIK3CG,PRKAR2B,SLC26A3,SLC26A4"
TCGA.AA.A02H.01A	7	106523469	127017193	700	0.6095	SMALL-GAIN	NONFOCAL	70	"AASS,ANKRD7,ASB15,ASZ1,BCAP29,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CFTR,COG5,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,DUS4L,FAM3C,FEZF1,FOXP2,GPR22,GPR37,GPR85,GRM8,HBP1,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LAMB1,LAMB4,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,NRCAM,PIK3CG,PNPLA8,POT1,PPP1R3A,PRKAR2B,PTPRZ1,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AA.A02J.01A	7	107312532	111376911	165	0.4663	SMALL-GAIN	NONFOCAL	14	"C7orf66,CBLL1,DLD,DNAJB9,DOCK4,IMMP2L,LAMB1,LAMB4,LRRN3,NRCAM,PNPLA8,SLC26A3,SLC26A4,THAP5"
TCGA.AG.A01J.01A	7	107323625	127725711	687	0.4918	SMALL-GAIN	NONFOCAL	69	"AASS,ANKRD7,ARF5,ASB15,ASZ1,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CFTR,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,FAM3C,FEZF1,FOXP2,FSCN3,GCC1,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LAMB1,LAMB4,LMOD2,LRRC4,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,NRCAM,PAX4,PNPLA8,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SND1,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AG.A01W.01A	7	107343171	127021113	653	0.4731	SMALL-GAIN	NONFOCAL	63	"AASS,ANKRD7,ASB15,ASZ1,C7orf60,C7orf66,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CBLL1,CFTR,CPED1,CTTNBP2,DLD,DNAJB9,DOCK4,FAM3C,FEZF1,FOXP2,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LAMB1,LAMB4,LMOD2,LRRN3,LSM8,LSMEM1,MDFIC,MET,NDUFA5,NRCAM,PNPLA8,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SLC26A3,SLC26A4,SPAM1,ST7,TAS2R16,TES,TFEC,THAP5,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277,ZNF800"
TCGA.AA.A01C.01A	7	107393807	111379148	150	0.4381	SMALL-GAIN	NONFOCAL	13	"C7orf66,CBLL1,DLD,DNAJB9,DOCK4,IMMP2L,LAMB1,LAMB4,LRRN3,NRCAM,PNPLA8,SLC26A3,THAP5"
TCGA.CK.5914.01A	7	108524057	113518559	95	0.3871	SMALL-GAIN	NONFOCAL	11	"C7orf60,C7orf66,DOCK4,GPR85,IFRD1,IMMP2L,LRRN3,LSMEM1,PPP1R3A,TMEM168,ZNF277"
TCGA.DM.A1DB	7	110467220	143127705	8581	0.4255	SMALL-GAIN	NONFOCAL	185	Too-Many
TCGA.F5.6464	7	110570240	147713979	9855	0.5223	SMALL-GAIN	NONFOCAL	209	Too-Many
TCGA.DY.A1DC	7	110745792	118412282	1693	0.456	SMALL-GAIN	NONFOCAL	25	"ANKRD7,ASZ1,C7orf60,CAPZA2,CAV1,CAV2,CFTR,CTTNBP2,DOCK4,FOXP2,GPR85,IFRD1,IMMP2L,LRRN3,LSM8,LSMEM1,MDFIC,MET,PPP1R3A,ST7,TES,TFEC,TMEM168,WNT2,ZNF277"
TCGA.AA.3975	7	110819561	126229389	3532	0.4473	SMALL-GAIN	NONFOCAL	50	"AASS,ANKRD7,ASB15,ASZ1,C7orf60,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DOCK4,FAM3C,FEZF1,FOXP2,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LMOD2,LSM8,LSMEM1,MDFIC,MET,NDUFA5,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,ST7,TAS2R16,TES,TFEC,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277"
TCGA.AA.3524	7	110827092	159119219	13462	0.449	SMALL-GAIN	NONFOCAL	288	Too-Many
TCGA.AA.A01Z	7	110864298	126912549	3764	0.512	SMALL-GAIN	NONFOCAL	50	"AASS,ANKRD7,ASB15,ASZ1,C7orf60,C7orf77,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DOCK4,FAM3C,FEZF1,FOXP2,GPR37,GPR85,GRM8,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LMOD2,LSM8,LSMEM1,MDFIC,MET,NDUFA5,POT1,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,ST7,TAS2R16,TES,TFEC,TMEM168,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF277"
TCGA.D5.6531	7	110879250	159119219	13458	0.3798	SMALL-GAIN	NONFOCAL	288	Too-Many
TCGA.AA.3842	7	111199296	157063376	12817	0.4245	SMALL-GAIN	NONFOCAL	282	Too-Many
TCGA.AG.3882	7	112040471	116705852	958	0.5943	SMALL-GAIN	NONFOCAL	15	"C7orf60,CAPZA2,CAV1,CAV2,FOXP2,GPR85,IFRD1,LSMEM1,MDFIC,MET,PPP1R3A,ST7,TES,TFEC,TMEM168"
TCGA.F5.6810	7	112482716	159119219	13037	0.4267	SMALL-GAIN	NONFOCAL	282	Too-Many
TCGA.CM.6170	7	113781930	159119219	12796	0.4709	SMALL-GAIN	NONFOCAL	279	Too-Many
TCGA.AA.3509.01A	7	116769778	127544735	369	0.4711	SMALL-GAIN	NONFOCAL	39	"AASS,ANKRD7,ARF5,ASB15,ASZ1,C7orf77,CADPS2,CFTR,CPED1,CTTNBP2,FAM3C,FEZF1,FSCN3,GCC1,GPR37,GRM8,HYAL4,ING3,IQUB,KCND2,LMOD2,LSM8,NDUFA5,PAX4,POT1,PTPRZ1,RNF133,RNF148,SLC13A1,SND1,SPAM1,ST7,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16,WNT2,ZNF800"
TCGA.DY.A1DC	7	118491002	126093580	1787	0.4359	SMALL-GAIN	NONFOCAL	26	"AASS,ASB15,C7orf77,CADPS2,CPED1,FAM3C,FEZF1,GPR37,GRM8,HYAL4,ING3,IQUB,KCND2,LMOD2,NDUFA5,POT1,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16"
TCGA.AY.6386	7	118792217	159119219	11705	0.4284	SMALL-GAIN	NONFOCAL	264	Too-Many
TCGA.CK.5914.01A	7	121943707	127017193	130	0.5001	SMALL-GAIN	NONFOCAL	19	"ASB15,C7orf77,CADPS2,FEZF1,GPR37,GRM8,HYAL4,IQUB,LMOD2,NDUFA5,POT1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,WASL,ZNF800"
TCGA.AG.3909.01A	7	121985580	126746498	116	0.675	SMALL-GAIN	NONFOCAL	17	"ASB15,C7orf77,CADPS2,GPR37,GRM8,HYAL4,IQUB,LMOD2,NDUFA5,POT1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,WASL"
TCGA.EI.6508	7	122714355	126113334	896	0.4926	SMALL-GAIN	NONFOCAL	13	"ASB15,C7orf77,GPR37,GRM8,HYAL4,IQUB,LMOD2,NDUFA5,POT1,SLC13A1,SPAM1,TMEM229A,WASL"
TCGA.DY.A1DC	7	126113334	133449915	2082	0.3978	SMALL-GAIN	NONFOCAL	50	"AHCYL2,ARF5,ATP6V1F,CALU,CCDC136,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,FAM71F1,FAM71F2,FLNC,FSCN3,GCC1,GRM8,HILPDA,IMPDH1,IRF5,KCP,KLF14,KLHDC10,LEP,LOC100130705,LRRC4,MEST,METTL2B,MKLN1,NRF1,OPN1SW,PAX4,PLXNA4,PODXL,PRRT4,RBM28,SMKR1,SMO,SND1,SSMEM1,STRIP2,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,ZC3HC1,ZNF800"
TCGA.EI.6508	7	126357926	153918860	8035	0.4519	SMALL-GAIN	NONFOCAL	220	Too-Many
TCGA.AA.3975	7	126472746	137816373	3474	0.4671	SMALL-GAIN	NONFOCAL	75	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ARF5,ATP6V1F,BPGM,C7orf49,C7orf73,CALD1,CALU,CCDC136,CEP41,CHCHD3,CHRM2,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DGKI,EXOC4,FAM180A,FAM71F1,FAM71F2,FLNC,FSCN3,GCC1,GRM8,HILPDA,IMPDH1,IRF5,KCP,KLF14,KLHDC10,LEP,LOC100130705,LOC100130880,LRGUK,LRRC4,LUZP6,MEST,METTL2B,MKLN1,MTPN,NRF1,NUP205,OPN1SW,PAX4,PLXNA4,PODXL,PRRT4,PTN,RBM28,SLC13A4,SLC35B4,SMKR1,SMO,SND1,SSMEM1,STRA8,STRIP2,TMEM140,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,WDR91,ZC3HC1,ZNF800"
TCGA.AZ.4684.01A	7	126746498	134717568	597	0.4369	SMALL-GAIN	NONFOCAL	58	"AGBL3,AHCYL2,AKR1B1,AKR1B10,AKR1B15,ARF5,ATP6V1F,BPGM,CALD1,CALU,CCDC136,CEP41,CHCHD3,COPG2,CPA1,CPA2,CPA4,CPA5,EXOC4,FAM71F1,FAM71F2,FLNC,FSCN3,GCC1,GRM8,HILPDA,IMPDH1,IRF5,KCP,KLF14,KLHDC10,LEP,LOC100130705,LRGUK,LRRC4,MEST,METTL2B,MKLN1,NRF1,OPN1SW,PAX4,PLXNA4,PODXL,PRRT4,RBM28,SLC35B4,SMKR1,SMO,SND1,SSMEM1,STRIP2,TMEM209,TNPO3,TSGA13,TSPAN33,UBE2H,ZC3HC1,ZNF800"
TCGA.D5.6538	7	127347732	159119219	9536	0.6014	SMALL-GAIN	NONFOCAL	233	Too-Many
TCGA.AA.3844	7	127586085	128930827	289	0.65	SMALL-GAIN	NONFOCAL	22	"AHCYL2,ATP6V1F,CALU,CCDC136,FAM71F1,FAM71F2,FLNC,HILPDA,IMPDH1,IRF5,KCP,LEP,LOC100130705,LRRC4,METTL2B,OPN1SW,PRRT4,RBM28,SMO,SND1,TNPO3,TSPAN33"
TCGA.AG.3727	7	127617771	144213476	4712	0.4476	SMALL-GAIN	NONFOCAL	152	Too-Many
TCGA.AA.3967.01A	7	127630953	149477078	1381	0.4087	SMALL-GAIN	NONFOCAL	168	Too-Many
TCGA.AG.A014.01A	7	127726941	129664083	210	0.6486	SMALL-GAIN	NONFOCAL	26	"AHCYL2,ATP6V1F,CALU,CCDC136,FAM71F1,FAM71F2,FLNC,HILPDA,IMPDH1,IRF5,KCP,LEP,LOC100130705,METTL2B,NRF1,OPN1SW,PRRT4,RBM28,SMKR1,SMO,SND1,STRIP2,TNPO3,TSPAN33,UBE2H,ZC3HC1"
TCGA.CI.6621	7	128732012	130599533	367	0.609	SMALL-GAIN	NONFOCAL	20	"AHCYL2,CEP41,COPG2,CPA1,CPA2,CPA4,CPA5,KLF14,KLHDC10,MEST,NRF1,SMKR1,SMO,SSMEM1,STRIP2,TMEM209,TSGA13,TSPAN33,UBE2H,ZC3HC1"
TCGA.AA.3680	7	128866388	142267509	4038	0.4128	SMALL-GAIN	NONFOCAL	89	"ADCK2,AGBL3,AGK,AHCYL2,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,BRAF,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CEP41,CHCHD3,CHRM2,CLEC2L,CLEC5A,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DENND2A,DGKI,EXOC4,FAM180A,HIPK2,KDM7A,KIAA1147,KIAA1549,KLF14,KLHDC10,KLRG2,LOC100130880,LRGUK,LUC7L2,LUZP6,MEST,MGAM,MGAM2,MKLN1,MKRN1,MRPS33,MTPN,NDUFB2,NRF1,NUP205,OR9A4,PARP12,PLXNA4,PODXL,PRSS37,PRSS58,PTN,RAB19,SLC13A4,SLC35B4,SLC37A3,SMKR1,SSBP1,SSMEM1,STRA8,STRIP2,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM140,TMEM178B,TMEM209,TMEM213,TRIM24,TSGA13,TTC26,UBE2H,UBN2,WDR91,WEE2,ZC3HAV1,ZC3HAV1L,ZC3HC1"
TCGA.AA.3844	7	129086287	131373156	545	0.5498	SMALL-GAIN	NONFOCAL	19	"CEP41,COPG2,CPA1,CPA2,CPA4,CPA5,KLF14,KLHDC10,MEST,MKLN1,NRF1,PODXL,SMKR1,SSMEM1,STRIP2,TMEM209,TSGA13,UBE2H,ZC3HC1"
TCGA.AG.4009.01A	7	129297168	130080693	106	0.4213	SMALL-GAIN	NONFOCAL	11	"CEP41,CPA1,CPA2,CPA4,CPA5,KLHDC10,NRF1,SSMEM1,TMEM209,UBE2H,ZC3HC1"
TCGA.AG.A014.01A	7	129665946	142625174	844	0.3882	SMALL-GAIN	NONFOCAL	89	"ADCK2,AGBL3,AGK,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,BRAF,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CEP41,CHCHD3,CHRM2,CLEC2L,CLEC5A,CNOT4,COPG2,CPA1,CPA2,CPA4,CPA5,CREB3L2,DENND2A,DGKI,EPHB6,EXOC4,FAM180A,HIPK2,KDM7A,KIAA1147,KIAA1549,KLF14,KLHDC10,KLRG2,LOC100130880,LRGUK,LUC7L2,LUZP6,MEST,MGAM,MGAM2,MKLN1,MKRN1,MRPS33,MTPN,MTRNR2L6,NDUFB2,NUP205,OR9A4,PARP12,PLXNA4,PODXL,PRSS1,PRSS37,PRSS58,PTN,RAB19,SLC13A4,SLC35B4,SLC37A3,SSBP1,SSMEM1,STRA8,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM140,TMEM178B,TMEM209,TMEM213,TRIM24,TRPV5,TRPV6,TSGA13,TTC26,UBN2,WDR91,WEE2,ZC3HAV1,ZC3HAV1L,ZC3HC1"
TCGA.AA.3844	7	131389654	135718967	1536	0.4099	SMALL-GAIN	NONFOCAL	22	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CHCHD3,CNOT4,EXOC4,FAM180A,LRGUK,LUZP6,MTPN,NUP205,PLXNA4,SLC13A4,SLC35B4,STRA8,TMEM140,WDR91"
TCGA.CM.5864	7	132611377	159119219	8066	0.3869	SMALL-GAIN	NONFOCAL	191	Too-Many
TCGA.AA.3845	7	133185210	159119219	7936	0.3889	SMALL-GAIN	NONFOCAL	190	Too-Many
TCGA.DY.A1DC	7	133463784	135407816	683	0.3867	SMALL-GAIN	NONFOCAL	17	"AGBL3,AKR1B1,AKR1B10,AKR1B15,BPGM,C7orf49,C7orf73,CALD1,CNOT4,EXOC4,LRGUK,NUP205,SLC13A4,SLC35B4,STRA8,TMEM140,WDR91"
TCGA.AA.3667	7	134041082	142338189	2537	0.5187	SMALL-GAIN	NONFOCAL	64	"ADCK2,AGBL3,AGK,AKR1B1,AKR1B10,AKR1B15,AKR1D1,ATP6V0A4,BPGM,BRAF,C7orf49,C7orf55,C7orf55-LUC7L2,C7orf73,CALD1,CHRM2,CLEC2L,CLEC5A,CNOT4,CREB3L2,DENND2A,DGKI,FAM180A,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,LUZP6,MGAM,MGAM2,MKRN1,MRPS33,MTPN,NDUFB2,NUP205,OR9A4,PARP12,PRSS37,PRSS58,PTN,RAB19,SLC13A4,SLC37A3,SSBP1,STRA8,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM140,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WDR91,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AG.4009.01A	7	134896083	138602284	220	0.4424	SMALL-GAIN	NONFOCAL	20	"AKR1D1,ATP6V0A4,C7orf73,CHRM2,CNOT4,CREB3L2,DGKI,FAM180A,KIAA1549,LOC100130880,LUZP6,MTPN,NUP205,PTN,SLC13A4,STRA8,SVOPL,TMEM213,TRIM24,WDR91"
TCGA.EI.6883	7	135223024	159119219	7219	0.3867	SMALL-GAIN	NONFOCAL	176	Too-Many
TCGA.CK.5914.01A	7	135347257	138314730	114	0.5732	SMALL-GAIN	NONFOCAL	13	"AKR1D1,C7orf73,CHRM2,CREB3L2,DGKI,FAM180A,LOC100130880,LUZP6,MTPN,PTN,SLC13A4,SVOPL,TRIM24"
TCGA.AA.A00F.01A	7	135366259	154875888	838	0.3954	SMALL-GAIN	NONFOCAL	157	Too-Many
TCGA.DY.A1DC	7	136804752	142156616	1500	0.3998	SMALL-GAIN	NONFOCAL	46	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CLEC2L,CLEC5A,CREB3L2,DENND2A,DGKI,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,NDUFB2,OR9A4,PARP12,PRSS37,PRSS58,PTN,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.A00Q.01A	7	137075919	142460682	289	0.4202	SMALL-GAIN	NONFOCAL	47	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CLEC2L,CLEC5A,CREB3L2,DENND2A,DGKI,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,OR9A4,PARP12,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.3968	7	137416970	142044059	1254	0.6203	SMALL-GAIN	NONFOCAL	45	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CLEC2L,CLEC5A,CREB3L2,DENND2A,DGKI,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,NDUFB2,OR9A4,PARP12,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.3941	7	137515501	143186287	1531	0.6458	SMALL-GAIN	NONFOCAL	66	"ADCK2,AGK,AKR1D1,ATP6V0A4,BRAF,C7orf34,C7orf55,C7orf55-LUC7L2,CASP2,CLCN1,CLEC2L,CLEC5A,CREB3L2,DENND2A,DGKI,EPHA1,EPHB6,FAM131B,GSTK1,HIPK2,KDM7A,KEL,KIAA1147,KIAA1549,KLRG2,LOC100130880,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,OR6V1,OR9A2,OR9A4,PARP12,PIP,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TBXAS1,TMEM139,TMEM178B,TMEM213,TRIM24,TRPV5,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L,ZYX"
TCGA.AA.3844	7	137827450	141709693	1004	0.5454	SMALL-GAIN	NONFOCAL	39	"ADCK2,AGK,ATP6V0A4,BRAF,C7orf55,C7orf55-LUC7L2,CLEC2L,CLEC5A,DENND2A,HIPK2,KDM7A,KIAA1147,KIAA1549,KLRG2,LUC7L2,MGAM,MKRN1,MRPS33,NDUFB2,OR9A4,PARP12,PRSS37,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TBXAS1,TMEM178B,TMEM213,TRIM24,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L"
TCGA.AA.3975	7	137827450	152963684	4201	0.4775	SMALL-GAIN	NONFOCAL	144	Too-Many
TCGA.AZ.4684.01A	7	138312043	148457398	602	0.445	SMALL-GAIN	NONFOCAL	85	"ADCK2,AGK,ARHGEF35,ARHGEF5,ATP6V0A4,BRAF,C7orf33,C7orf34,C7orf55,C7orf55-LUC7L2,CASP2,CLCN1,CLEC2L,CLEC5A,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,DENND2A,EPHA1,EPHB6,FAM131B,GSTK1,HIPK2,KDM7A,KEL,KIAA1147,KIAA1549,KLRG2,LUC7L2,MGAM,MGAM2,MKRN1,MRPS33,MTRNR2L6,NDUFB2,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,OR9A4,PARP12,PIP,PRSS1,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,SVOPL,TAS2R3,TAS2R38,TAS2R39,TAS2R4,TAS2R40,TAS2R41,TAS2R5,TAS2R60,TBXAS1,TCAF1,TCAF2,TMEM139,TMEM178B,TMEM213,TPK1,TRPV5,TRPV6,TTC26,UBN2,WEE2,ZC3HAV1,ZC3HAV1L,ZYX"
TCGA.AG.3611.01A	7	138487605	139661680	60	0.3904	SMALL-GAIN	NONFOCAL	13	"C7orf55,C7orf55-LUC7L2,CLEC2L,HIPK2,KIAA1549,KLRG2,LUC7L2,TBXAS1,TMEM213,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.NH.A6GA	7	138506401	159119219	6179	0.3996	SMALL-GAIN	NONFOCAL	160	Too-Many
TCGA.AG.3611.01A	7	140035011	141957407	101	0.4471	SMALL-GAIN	NONFOCAL	23	"ADCK2,AGK,BRAF,CLEC5A,DENND2A,KIAA1147,MGAM,MGAM2,MKRN1,MRPS33,NDUFB2,OR9A4,PRSS37,PRSS58,RAB19,SLC37A3,SSBP1,TAS2R3,TAS2R38,TAS2R4,TAS2R5,TMEM178B,WEE2"
TCGA.AA.3861.01A	7	141759220	143174939	166	0.5528	SMALL-GAIN	NONFOCAL	23	"C7orf34,CASP2,CLCN1,EPHA1,EPHB6,FAM131B,GSTK1,KEL,MGAM,MGAM2,MTRNR2L6,OR6V1,OR9A2,PIP,PRSS1,PRSS58,TAS2R39,TAS2R40,TAS2R60,TMEM139,TRPV5,TRPV6,ZYX"
TCGA.AA.3862.01A	7	141759220	143174939	167	0.4728	SMALL-GAIN	NONFOCAL	23	"C7orf34,CASP2,CLCN1,EPHA1,EPHB6,FAM131B,GSTK1,KEL,MGAM,MGAM2,MTRNR2L6,OR6V1,OR9A2,PIP,PRSS1,PRSS58,TAS2R39,TAS2R40,TAS2R60,TMEM139,TRPV5,TRPV6,ZYX"
TCGA.EI.6511	7	141808572	159119219	5347	0.5672	SMALL-GAIN	NONFOCAL	125	Too-Many
TCGA.AG.4009.01A	7	141954883	143054052	117	0.5572	SMALL-GAIN	NONFOCAL	18	"C7orf34,CASP2,CLCN1,EPHB6,FAM131B,GSTK1,KEL,MTRNR2L6,OR6V1,OR9A2,PIP,PRSS1,PRSS58,TAS2R39,TAS2R40,TMEM139,TRPV5,TRPV6"
TCGA.AA.3855	7	142378632	159119219	5155	0.4302	SMALL-GAIN	NONFOCAL	122	Too-Many
TCGA.AA.3844	7	142404414	144164090	357	0.4344	SMALL-GAIN	NONFOCAL	41	"ARHGEF35,ARHGEF5,C7orf34,CASP2,CLCN1,CTAGE15,CTAGE4,CTAGE6,CTAGE8,EPHA1,EPHB6,FAM131B,GSTK1,KEL,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,PIP,PRSS1,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM139,TPK1,TRPV5,TRPV6,ZYX"
TCGA.DY.A1DC	7	142404414	159119219	5145	0.3832	SMALL-GAIN	NONFOCAL	122	Too-Many
TCGA.AA.3680	7	142493128	159119219	5139	0.412	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.AA.3693	7	142500466	159119219	5137	0.4632	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.AA.3818	7	142500466	159119219	5136	0.6712	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.AA.3667	7	142502655	146673397	1030	0.4622	SMALL-GAIN	NONFOCAL	41	"ARHGEF35,ARHGEF5,C7orf34,CASP2,CLCN1,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,EPHA1,EPHB6,FAM131B,GSTK1,KEL,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,PIP,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM139,TPK1,TRPV5,TRPV6,ZYX"
TCGA.AA.3854	7	142502655	149636503	2047	0.531	SMALL-GAIN	NONFOCAL	58	"ARHGEF35,ARHGEF5,ATP6V0E2,C7orf33,C7orf34,CASP2,CLCN1,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,EPHB6,EZH2,FAM131B,GSTK1,KEL,KRBA1,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,OR6V1,OR9A2,PDIA4,PIP,SSPO,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM139,TPK1,TRPV5,TRPV6,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF777,ZNF783,ZNF786,ZNF862,ZYX"
TCGA.AA.A010.01A	7	142583117	143021450	69	0.5409	SMALL-GAIN	NONFOCAL	13	"C7orf34,CASP2,CLCN1,GSTK1,KEL,OR6V1,OR9A2,PIP,TAS2R39,TAS2R40,TMEM139,TRPV5,TRPV6"
TCGA.AG.A014.01A	7	142627407	158716235	788	0.4861	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AG.A01W.01A	7	142766001	148432981	166	0.4054	SMALL-GAIN	NONFOCAL	36	"ARHGEF35,ARHGEF5,C7orf33,CASP2,CLCN1,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,EPHA1,FAM131B,GSTK1,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,PIP,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM139,TPK1,ZYX"
TCGA.DM.A1DB	7	143132562	157972750	4656	0.389	SMALL-GAIN	NONFOCAL	100	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ARHGEF35,ARHGEF5,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,DNAJB6,DPP6,EN2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NOBOX,NOM1,NOS3,NUB1,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TAS2R41,TAS2R60,TCAF1,TCAF2,TMEM176A,TMEM176B,TMUB1,TPK1,UBE3C,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AG.4009.01A	7	143140539	143826188	21	0.3857	SMALL-GAIN	NONFOCAL	13	"CTAGE15,CTAGE6,OR2A12,OR2A2,OR2A25,OR2A5,OR2F1,OR2F2,OR6B1,TAS2R41,TAS2R60,TCAF1,TCAF2"
TCGA.AG.3909.01A	7	143140539	148456589	87	0.6437	SMALL-GAIN	NONFOCAL	26	"ARHGEF35,ARHGEF5,C7orf33,CNTNAP2,CTAGE15,CTAGE4,CTAGE6,CTAGE8,CUL1,NOBOX,OR2A1,OR2A12,OR2A14,OR2A2,OR2A25,OR2A42,OR2A5,OR2A7,OR2F1,OR2F2,OR6B1,TAS2R41,TAS2R60,TCAF1,TCAF2,TPK1"
TCGA.G5.6572	7	145676881	159119219	4392	0.3802	SMALL-GAIN	NONFOCAL	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3667	7	146678994	159119219	4103	0.5111	SMALL-GAIN	NONFOCAL	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.CM.4752	7	146938867	159119219	4018	0.3969	SMALL-GAIN	NONFOCAL	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AG.3727	7	147025942	159119219	3985	0.4494	SMALL-GAIN	NONFOCAL	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3872	7	147401238	157514188	3340	0.4878	SMALL-GAIN	NONFOCAL	77	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3844	7	147475117	155292019	2567	0.5251	SMALL-GAIN	NONFOCAL	66	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNTNAP2,CRYGN,CUL1,DPP6,EN2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LRRC61,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3685	7	147729498	159119219	3659	0.5096	SMALL-GAIN	NONFOCAL	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.F5.6464	7	147729498	159119219	3656	0.4843	SMALL-GAIN	NONFOCAL	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.AA.3982	7	148877604	149636503	188	0.4316	SMALL-GAIN	NONFOCAL	11	"ATP6V0E2,KRBA1,SSPO,ZNF212,ZNF282,ZNF398,ZNF467,ZNF746,ZNF777,ZNF783,ZNF862"
TCGA.AG.A01W.01A	7	149138908	150323183	100	0.455	SMALL-GAIN	NONFOCAL	17	"ACTR3C,ATP6V0E2,GIMAP4,GIMAP6,GIMAP7,GIMAP8,KRBA1,LRRC61,RARRES2,REPIN1,SSPO,ZBED6CL,ZNF467,ZNF746,ZNF775,ZNF777,ZNF862"
TCGA.F4.6460	7	149893571	159119219	3066	0.4877	SMALL-GAIN	NONFOCAL	63	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,ESYT2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF775"
TCGA.AA.3967.01A	7	150027486	151818584	232	0.6124	SMALL-GAIN	NONFOCAL	39	"ABCB8,ABCF2,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CRYGN,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,LRRC61,NOS3,NUB1,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,WDR86,ZBED6CL,ZNF775"
TCGA.AG.4009.01A	7	150171081	150558079	32	0.4328	SMALL-GAIN	NONFOCAL	11	"AOC1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,TMEM176A,TMEM176B"
TCGA.AA.3982	7	150268515	155293051	1776	0.3889	SMALL-GAIN	NONFOCAL	40	"ABCB8,ABCF2,ACTR3B,AGAP3,AOC1,ASB10,ASIC3,ATG9B,CDK5,CHPF2,CRYGN,DPP6,EN2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,NOS3,NUB1,PAXIP1,PRKAG2,RHEB,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,WDR86,XRCC2"
TCGA.AG.A01W.01A	7	151179497	158404156	337	0.415	SMALL-GAIN	NONFOCAL	23	"ACTR3B,CNPY1,DNAJB6,DPP6,EN2,GALNT11,GALNTL5,HTR5A,INSIG1,KMT2C,LMBR1,LOC389602,MNX1,NOM1,PAXIP1,PRKAG2,PTPRN2,RBM33,RHEB,RNF32,SHH,UBE3C,XRCC2"
TCGA.AA.3975	7	153167193	159119219	2086	0.4464	SMALL-GAIN	NONFOCAL	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.DM.A1D6	7	153524877	159119219	1972	0.463	SMALL-GAIN	NONFOCAL	20	"CNPY1,DNAJB6,DPP6,EN2,ESYT2,HTR5A,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PAXIP1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.DC.4745	7	155008950	159119219	1302	0.63	SMALL-GAIN	NONFOCAL	17	"CNPY1,DNAJB6,EN2,ESYT2,INSIG1,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.A00F.01A	7	155251033	158935086	134	0.4574	SMALL-GAIN	NONFOCAL	16	"CNPY1,DNAJB6,EN2,ESYT2,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.AA.3844	7	155301892	159119219	1187	0.5961	SMALL-GAIN	NONFOCAL	15	"CNPY1,DNAJB6,ESYT2,LMBR1,LOC389602,MNX1,NCAPG2,NOM1,PTPRN2,RBM33,RNF32,SHH,UBE3C,VIPR2,WDR60"
TCGA.EI.6508	7	155887045	159119219	969	0.4452	SMALL-GAIN	NONFOCAL	11	"DNAJB6,ESYT2,LMBR1,MNX1,NCAPG2,NOM1,PTPRN2,RNF32,UBE3C,VIPR2,WDR60"
TCGA.AA.3982	7	156314701	159046948	769	0.4923	SMALL-GAIN	NONFOCAL	11	"DNAJB6,ESYT2,LMBR1,MNX1,NCAPG2,NOM1,PTPRN2,RNF32,UBE3C,VIPR2,WDR60"
TCGA.AA.3514	8	164983	43409350	18265	0.4272	SMALL-GAIN	NONFOCAL	254	Too-Many
TCGA.CK.6746	8	164983	114120264	36264	0.5069	SMALL-GAIN	NONFOCAL	489	Too-Many
TCGA.CM.5864	8	164983	116850528	36982	0.4209	SMALL-GAIN	NONFOCAL	490	Too-Many
TCGA.QG.A5YX	8	164983	121371281	38333	0.5408	SMALL-GAIN	NONFOCAL	507	Too-Many
TCGA.AA.3526	8	164983	132345697	42736	0.3801	SMALL-GAIN	NONFOCAL	543	Too-Many
TCGA.AA.3524	8	164983	146293413	47728	0.4452	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AA.3534	8	164983	146293413	47757	0.4613	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AA.3663	8	164983	146293413	47668	0.4837	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AA.3696	8	164983	146293413	47802	0.4528	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AA.A02O	8	164983	146293413	47742	0.4695	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AD.5900	8	164983	146293413	47682	0.4112	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AG.3887	8	164983	146293413	47590	0.4134	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AY.6197	8	164983	146293413	46739	0.4835	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AZ.4615	8	164983	146293413	47740	0.4389	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AZ.5407	8	164983	146293413	47777	0.4906	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.CM.4746	8	164983	146293413	47724	0.4549	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.CM.5861	8	164983	146293413	47713	0.4276	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.D5.6537	8	164983	146293413	47518	0.4403	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.D5.6540	8	164983	146293413	47661	0.4422	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.DM.A0X9	8	164983	146293413	47770	0.418	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.EI.6509	8	164983	146293413	47777	0.4502	SMALL-GAIN	NONFOCAL	655	Too-Many
TCGA.AA.A00L.01A	8	2089003	14412214	219	0.419	SMALL-GAIN	NONFOCAL	71	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.AZ.6598	8	2317514	15954751	7721	0.4698	SMALL-GAIN	NONFOCAL	71	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.CK.5913	8	3170593	146293413	46214	0.386	SMALL-GAIN	NONFOCAL	646	Too-Many
TCGA.AA.3558	8	3394485	146293413	46098	0.5034	SMALL-GAIN	NONFOCAL	646	Too-Many
TCGA.AG.3574	8	3679503	146293413	45794	0.4994	SMALL-GAIN	NONFOCAL	646	Too-Many
TCGA.DM.A1DA	8	4078052	15401177	5915	0.5409	SMALL-GAIN	NONFOCAL	71	"AGPAT5,ANGPT2,BLK,C8orf48,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.G4.6626	8	4505913	7011074	1973	0.4289	SMALL-GAIN	NONFOCAL	12	"AGPAT5,ANGPT2,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,MCPH1,XKR5"
TCGA.AA.3673	8	4663170	146293413	44819	0.5354	SMALL-GAIN	NONFOCAL	646	Too-Many
TCGA.AA.3502	8	4676660	146293413	44736	0.4749	SMALL-GAIN	NONFOCAL	646	Too-Many
TCGA.D5.5539	8	5607155	7011074	1086	0.4779	SMALL-GAIN	NONFOCAL	11	"AGPAT5,ANGPT2,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,MCPH1,XKR5"
TCGA.DM.A28K	8	5607155	115312811	32782	0.4853	SMALL-GAIN	NONFOCAL	479	Too-Many
TCGA.AD.A5EK	8	6755819	11857205	2110	0.4426	SMALL-GAIN	NONFOCAL	52	"BLK,C8orf74,CLDN23,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,ERI1,FAM167A,FDFT1,GATA4,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR6,ZNF705B,ZNF705G"
TCGA.CK.5914.01A	8	6912906	7752172	24	0.5747	SMALL-GAIN	NONFOCAL	20	"DEFA5,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,PRR23D1,PRR23D2,SPAG11A,SPAG11B,USP17L1,USP17L4,ZNF705G"
TCGA.AA.A00Q.01A	8	6912906	8559862	26	0.5858	SMALL-GAIN	NONFOCAL	25	"CLDN23,DEFA5,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,USP17L1,USP17L3,USP17L4,USP17L8,ZNF705B,ZNF705G"
TCGA.AA.3941	8	6921967	8148288	50	0.417	SMALL-GAIN	NONFOCAL	22	"DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,PRR23D1,PRR23D2,SPAG11A,SPAG11B,USP17L1,USP17L3,USP17L4,USP17L8,ZNF705B,ZNF705G"
TCGA.CK.4952.01A	8	7295615	7735989	12	0.4788	SMALL-GAIN	NONFOCAL	12	"DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,PRR23D1,PRR23D2,SPAG11A,SPAG11B"
TCGA.AA.A00A.01A	8	7320189	7720950	14	0.527	SMALL-GAIN	NONFOCAL	12	"DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,PRR23D1,PRR23D2,SPAG11A,SPAG11B"
TCGA.DM.A1DA	8	15423269	146293413	39388	0.5657	SMALL-GAIN	NONFOCAL	576	Too-Many
TCGA.AD.A5EK	8	15949976	146293413	38818	0.4453	SMALL-GAIN	NONFOCAL	575	Too-Many
TCGA.AZ.6598	8	15999038	56722690	12018	0.4919	SMALL-GAIN	NONFOCAL	200	Too-Many
TCGA.AA.3941	8	16817415	18029990	735	0.575	SMALL-GAIN	NONFOCAL	13	"ASAH1,CNOT7,FGF20,FGL1,MICU3,MTMR7,MTUS1,NAT1,PCM1,PDGFRL,SLC7A2,VPS37A,ZDHHC2"
TCGA.AA.3811	8	21376853	23441752	620	0.5142	SMALL-GAIN	NONFOCAL	35	"BIN3,BMP1,C8orf58,CCAR2,CHMP7,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,GFRA2,HR,LGI3,LOXL2,NPM2,NUDT18,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,R3HCC1,REEP4,RHOBTB2,SFTPC,SLC25A37,SLC39A14,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,XPO7"
TCGA.AA.3850	8	21549017	23435915	541	0.40935	SMALL-GAIN	NONFOCAL	35	"BIN3,BMP1,C8orf58,CCAR2,CHMP7,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,GFRA2,HR,LGI3,LOXL2,NPM2,NUDT18,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,R3HCC1,REEP4,RHOBTB2,SFTPC,SLC25A37,SLC39A14,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,XPO7"
TCGA.A6.3808.01A	8	22526480	36790386	747	0.3914	SMALL-GAIN	NONFOCAL	74	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BIN3,BNIP3L,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,EGR3,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCNU1,KCTD9,KIF13B,LEPROTL1,LOXL2,MAK16,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PEBP4,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,R3HCC1,RBPMS,RHOBTB2,RNF122,SARAF,SCARA3,SCARA5,SLC25A37,SMIM18,STC1,STMN4,TEX15,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,TTI2,UBXN8,UNC5D,WRN,ZNF395"
TCGA.QG.A5Z1	8	23118442	33154178	3740	0.4653	SMALL-GAIN	NONFOCAL	59	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BNIP3L,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,LOXL2,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,R3HCC1,RBPMS,SARAF,SCARA3,SCARA5,SLC25A37,SMIM18,STC1,STMN4,TEX15,TRIM35,UBXN8,WRN,ZNF395"
TCGA.A6.2677	8	26889902	30508226	1213	0.6696	SMALL-GAIN	NONFOCAL	29	"CCDC25,CHRNA2,CLU,DCTN6,DUSP4,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NUGGC,PBK,PNOC,PTK2B,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TRIM35,ZNF395"
TCGA.CM.6676	8	27644871	29413435	614	0.4107	SMALL-GAIN	NONFOCAL	14	"DUSP4,ELP3,ESCO2,EXTL3,FBXO16,FZD3,HMBOX1,INTS9,KIF13B,NUGGC,PBK,PNOC,SCARA5,ZNF395"
TCGA.AA.3941	8	27673619	31272834	1186	0.6434	SMALL-GAIN	NONFOCAL	26	"DCTN6,DUSP4,ELP3,EXTL3,FBXO16,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NUGGC,PBK,PNOC,PPP2CB,PURG,RBPMS,SARAF,SCARA5,SMIM18,TEX15,UBXN8,WRN,ZNF395"
TCGA.CK.4952.01A	8	27785322	109042027	2978	0.5123	SMALL-GAIN	NONFOCAL	312	Too-Many
TCGA.CA.6715	8	27817483	28964669	372	0.5354	SMALL-GAIN	NONFOCAL	11	"ELP3,EXTL3,FBXO16,FZD3,HMBOX1,INTS9,KIF13B,NUGGC,PNOC,SCARA5,ZNF395"
TCGA.AA.3667	8	28227331	32196591	1272	0.474	SMALL-GAIN	NONFOCAL	22	"DCTN6,DUSP4,EXTL3,FBXO16,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NRG1,PPP2CB,PURG,RBPMS,SARAF,SMIM18,TEX15,UBXN8,WRN,ZNF395"
TCGA.AA.3664	8	28580961	42354256	3844	0.4185	SMALL-GAIN	NONFOCAL	71	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DCTN6,DDHD2,DKK4,DUSP26,DUSP4,EIF4EBP1,ERLIN2,EXTL3,FGFR1,FUT10,GINS4,GOLGA7,GOT1L1,GSR,GTF2E2,HMBOX1,HTRA4,IDO1,IDO2,IKBKB,INTS9,KAT6A,KCNU1,KIF13B,LEPROTL1,LETM2,LSM1,MAK16,MBOAT4,NKX6-3,NRG1,PLAT,PLEKHA2,POLB,PPAPDC1B,PPP2CB,PROSC,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SFRP1,SLC20A2,SMIM18,STAR,TACC1,TEX15,TM2D2,TTI2,UBXN8,UNC5D,VDAC3,WHSC1L1,WRN,ZMAT4,ZNF703"
TCGA.AH.6644	8	28667365	146293413	33323	0.4364	SMALL-GAIN	NONFOCAL	481	Too-Many
TCGA.D5.6923	8	28798627	30582622	543	0.4361	SMALL-GAIN	NONFOCAL	11	"DCTN6,DUSP4,GSR,GTF2E2,HMBOX1,KIF13B,LEPROTL1,MBOAT4,RBPMS,SARAF,SMIM18"
TCGA.AG.A01Y	8	28924857	66121051	9109	0.4605	SMALL-GAIN	NONFOCAL	129	Too-Many
TCGA.A6.6137	8	29404959	42898470	3689	0.4569	SMALL-GAIN	NONFOCAL	72	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DCTN6,DDHD2,DKK4,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GINS4,GOLGA7,GOT1L1,GSR,GTF2E2,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LEPROTL1,LETM2,LSM1,MAK16,MBOAT4,NKX6-3,NRG1,PLAT,PLEKHA2,POLB,PPAPDC1B,PPP2CB,PROSC,PURG,RAB11FIP1,RBPMS,RNF122,RNF170,SARAF,SFRP1,SLC20A2,SMIM18,SMIM19,STAR,TACC1,TEX15,THAP1,TM2D2,TTI2,UBXN8,UNC5D,VDAC3,WHSC1L1,WRN,ZMAT4,ZNF703"
TCGA.AA.3979	8	31839798	43778913	2952	0.5225	SMALL-GAIN	NONFOCAL	63	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FNTA,FUT10,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MAK16,NKX6-3,NRG1,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF122,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,TTI2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.CA.6715	8	31920738	42725562	2862	0.4793	SMALL-GAIN	NONFOCAL	58	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GINS4,GOLGA7,GOT1L1,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,MAK16,NKX6-3,NRG1,PLAT,PLEKHA2,POLB,PPAPDC1B,PROSC,RAB11FIP1,RNF122,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,TTI2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.AA.3667	8	32243873	146293413	32266	0.4647	SMALL-GAIN	NONFOCAL	464	Too-Many
TCGA.CM.5348	8	32780781	75993149	10707	0.5628	SMALL-GAIN	NONFOCAL	161	Too-Many
TCGA.CM.5863	8	33104247	146293413	31885	0.3833	SMALL-GAIN	NONFOCAL	463	Too-Many
TCGA.F5.6702	8	33451129	104357506	17827	0.4021	SMALL-GAIN	NONFOCAL	270	Too-Many
TCGA.QG.A5Z1	8	33584660	43778913	2324	0.4722	SMALL-GAIN	NONFOCAL	57	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PROSC,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.F5.6864	8	34179423	38299418	896	0.4727	SMALL-GAIN	NONFOCAL	20	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,UNC5D,WHSC1L1,ZNF703"
TCGA.AA.3860	8	34211782	38344498	905	0.3827	SMALL-GAIN	NONFOCAL	20	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,UNC5D,WHSC1L1,ZNF703"
TCGA.AA.3975	8	34372292	123511246	23119	0.6034	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.DM.A1DB	8	34441682	77837945	10760	0.3902	SMALL-GAIN	NONFOCAL	158	Too-Many
TCGA.AG.3591	8	34821753	146293413	31513	0.6286	SMALL-GAIN	NONFOCAL	458	Too-Many
TCGA.G4.6626	8	34860376	38295541	710	0.6049	SMALL-GAIN	NONFOCAL	20	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,UNC5D,WHSC1L1,ZNF703"
TCGA.AG.A014.01A	8	35624373	113236953	2685	0.5389	SMALL-GAIN	NONFOCAL	292	Too-Many
TCGA.5M.AATA	8	35826544	40181977	969	0.4356	SMALL-GAIN	NONFOCAL	31	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.G4.6303	8	35916717	38031344	465	0.6308	SMALL-GAIN	NONFOCAL	13	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,KCNU1,LSM1,PROSC,RAB11FIP1,STAR,ZNF703"
TCGA.AZ.6608	8	36210268	38840590	567	0.6181	SMALL-GAIN	NONFOCAL	23	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,WHSC1L1,ZNF703"
TCGA.CM.5860	8	36363156	39881690	729	0.4935	SMALL-GAIN	NONFOCAL	30	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.AA.3681	8	36638479	38780605	475	0.4072	SMALL-GAIN	NONFOCAL	22	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,WHSC1L1,ZNF703"
TCGA.CK.4948.01B	8	36641892	39068613	267	0.6457	SMALL-GAIN	NONFOCAL	26	"ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.AG.3902	8	36660956	128076544	24362	0.4509	SMALL-GAIN	NONFOCAL	339	Too-Many
TCGA.CM.6676	8	36700904	38548440	417	0.4013	SMALL-GAIN	NONFOCAL	20	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,KCNU1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,WHSC1L1,ZNF703"
TCGA.AD.6899	8	36718618	127292995	24020	0.4306	SMALL-GAIN	NONFOCAL	338	Too-Many
TCGA.AA.3811	8	36904550	38943290	439	0.418	SMALL-GAIN	NONFOCAL	24	"ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZNF703"
TCGA.AA.3496	8	36950800	38334037	273	0.4986	SMALL-GAIN	NONFOCAL	18	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,LETM2,LSM1,PPAPDC1B,PROSC,RAB11FIP1,STAR,WHSC1L1,ZNF703"
TCGA.CM.6169	8	37221095	52309918	2437	0.6676	SMALL-GAIN	NONFOCAL	65	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf22,C8orf4,C8orf86,CEBPD,CHRNA6,CHRNB3,DDHD2,DKK4,EFCAB1,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,MCM4,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PRKDC,PROSC,PXDNL,RAB11FIP1,RNF170,SFRP1,SLC20A2,SMIM19,SNAI2,SNTG1,SPIDR,STAR,TACC1,THAP1,TM2D2,UBE2V2,VDAC3,WHSC1L1,ZMAT4,ZNF703"
TCGA.AF.A56L	8	37489507	146293413	30781	0.4745	SMALL-GAIN	NONFOCAL	456	Too-Many
TCGA.AG.3891.01A	8	37553471	38029446	79	0.6172	SMALL-GAIN	NONFOCAL	12	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,LSM1,PROSC,RAB11FIP1,STAR,ZNF703"
TCGA.AA.3858	8	37645465	38133792	40	0.6	SMALL-GAIN	NONFOCAL	13	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,GOT1L1,LSM1,PPAPDC1B,RAB11FIP1,STAR,WHSC1L1"
TCGA.DM.A0XF	8	37645465	126512908	23486	0.6142	SMALL-GAIN	NONFOCAL	334	Too-Many
TCGA.AG.3896	8	37800511	51196412	2064	0.4967	SMALL-GAIN	NONFOCAL	57	"ADAM18,ADAM2,ADAM32,ADAM9,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,C8orf22,C8orf4,C8orf86,CEBPD,CHRNA6,CHRNB3,DDHD2,DKK4,EFCAB1,EIF4EBP1,FGFR1,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,LETM2,LSM1,MCM4,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,PPAPDC1B,PRKDC,RNF170,SFRP1,SLC20A2,SMIM19,SNAI2,SNTG1,SPIDR,STAR,TACC1,THAP1,TM2D2,UBE2V2,VDAC3,WHSC1L1,ZMAT4"
TCGA.AZ.5403	8	37971941	39288761	229	0.6736	SMALL-GAIN	NONFOCAL	16	"ADAM32,ADAM9,ASH2L,BAG4,C8orf86,DDHD2,FGFR1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,STAR,TACC1,TM2D2,WHSC1L1"
TCGA.AA.A01Z	8	37974493	40181977	520	0.5378	SMALL-GAIN	NONFOCAL	21	"ADAM18,ADAM2,ADAM32,ADAM9,ASH2L,BAG4,C8orf4,C8orf86,DDHD2,FGFR1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,STAR,TACC1,TM2D2,WHSC1L1"
TCGA.CM.6172	8	37989304	40451399	657	0.6433	SMALL-GAIN	NONFOCAL	22	"ADAM18,ADAM2,ADAM32,ADAM9,ASH2L,BAG4,C8orf4,C8orf86,DDHD2,FGFR1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.AA.3867	8	38031344	39599377	263	0.4489	SMALL-GAIN	NONFOCAL	15	"ADAM18,ADAM32,ADAM9,BAG4,C8orf86,DDHD2,FGFR1,HTRA4,LETM2,LSM1,PLEKHA2,PPAPDC1B,TACC1,TM2D2,WHSC1L1"
TCGA.AA.3980.01A	8	38099730	95186018	1889	0.5173	SMALL-GAIN	NONFOCAL	202	Too-Many
TCGA.DC.6158	8	38105996	146293413	30706	0.4929	SMALL-GAIN	NONFOCAL	443	Too-Many
TCGA.DM.A28H	8	38160042	41418134	945	0.387	SMALL-GAIN	NONFOCAL	19	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,C8orf86,FGFR1,GINS4,GOLGA7,HTRA4,IDO1,IDO2,LETM2,PLEKHA2,SFRP1,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.AA.3660	8	38167648	67376419	6831	0.4164	SMALL-GAIN	NONFOCAL	99	"ADAM18,ADAM2,ADAM32,ADAM9,ADHFE1,AGPAT6,ANK1,AP3M2,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf4,C8orf86,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,CRH,CYP7A1,CYP7B1,DKK4,DNAJC5B,EFCAB1,FAM110B,FAM150A,FGFR1,FNTA,GGH,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,IMPAD1,KAT6A,LETM2,LYN,LYPLA1,MCM4,MOS,MRPL15,MTFR1,NKAIN3,NKX6-3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PLAT,PLEKHA2,POLB,POMK,POTEA,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,RRS1,SDCBP,SDR16C5,SFRP1,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TACC1,TCEA1,TGS1,THAP1,TM2D2,TMEM68,TOX,TRIM55,TTPA,UBE2V2,UBXN2B,VDAC3,WHSC1L1,XKR4,YTHDF3,ZMAT4"
TCGA.DM.A285	8	38379249	146293413	30672	0.5638	SMALL-GAIN	NONFOCAL	438	Too-Many
TCGA.AG.3732	8	38715286	146293413	30585	0.4286	SMALL-GAIN	NONFOCAL	436	Too-Many
TCGA.DC.6683	8	38767783	146293413	30587	0.4354	SMALL-GAIN	NONFOCAL	436	Too-Many
TCGA.AA.3858	8	38888950	41761806	926	0.4562	SMALL-GAIN	NONFOCAL	14	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,C8orf4,GINS4,GOLGA7,IDO1,IDO2,NKX6-3,SFRP1,ZMAT4"
TCGA.F5.6864	8	39136550	146293413	30531	0.6077	SMALL-GAIN	NONFOCAL	432	Too-Many
TCGA.D5.6922	8	39398021	146293413	30508	0.5186	SMALL-GAIN	NONFOCAL	431	Too-Many
TCGA.D5.6926	8	39584167	146293413	30484	0.5101	SMALL-GAIN	NONFOCAL	431	Too-Many
TCGA.EI.6883	8	39834818	117430690	19857	0.6414	SMALL-GAIN	NONFOCAL	263	Too-Many
TCGA.CM.5860	8	39910664	146293413	30387	0.4727	SMALL-GAIN	NONFOCAL	427	Too-Many
TCGA.AZ.4681	8	39955251	146293413	30396	0.4868	SMALL-GAIN	NONFOCAL	427	Too-Many
TCGA.AA.3509.01A	8	40011030	42188367	133	0.4291	SMALL-GAIN	NONFOCAL	12	"AGPAT6,ANK1,AP3M2,C8orf4,GINS4,GOLGA7,IKBKB,KAT6A,NKX6-3,PLAT,SFRP1,ZMAT4"
TCGA.A6.A567	8	40060070	43625409	874	0.5396	SMALL-GAIN	NONFOCAL	25	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.CM.5349	8	40103054	146293413	30326	0.425	SMALL-GAIN	NONFOCAL	426	Too-Many
TCGA.5M.AATA	8	40192909	146293413	30282	0.6075	SMALL-GAIN	NONFOCAL	426	Too-Many
TCGA.G5.6641	8	40260550	146293413	30197	0.4617	SMALL-GAIN	NONFOCAL	426	Too-Many
TCGA.AZ.6608	8	40279379	98839192	14721	0.6011	SMALL-GAIN	NONFOCAL	206	Too-Many
TCGA.AA.3496	8	40418017	127075270	22979	0.4194	SMALL-GAIN	NONFOCAL	307	Too-Many
TCGA.AA.3692	8	40575913	146293413	30107	0.5365	SMALL-GAIN	NONFOCAL	426	Too-Many
TCGA.D5.6541	8	40663788	146293413	30082	0.3915	SMALL-GAIN	NONFOCAL	426	Too-Many
TCGA.AZ.5403	8	40673945	46936839	592	0.6279	SMALL-GAIN	NONFOCAL	25	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AA.3560	8	40676436	42505422	491	0.5342	SMALL-GAIN	NONFOCAL	16	"AGPAT6,ANK1,AP3M2,DKK4,GINS4,GOLGA7,IKBKB,KAT6A,NKX6-3,PLAT,POLB,SFRP1,SLC20A2,SMIM19,VDAC3,ZMAT4"
TCGA.AA.3811	8	40683394	43420831	566	0.3929	SMALL-GAIN	NONFOCAL	25	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.F4.6459	8	40763488	146293413	30038	0.4641	SMALL-GAIN	NONFOCAL	425	Too-Many
TCGA.AG.A026	8	40784117	146293413	30001	0.6675	SMALL-GAIN	NONFOCAL	425	Too-Many
TCGA.AA.3679	8	40880500	90484286	12134	0.3889	SMALL-GAIN	NONFOCAL	164	Too-Many
TCGA.CI.6619	8	40937650	146293413	29950	0.4353	SMALL-GAIN	NONFOCAL	425	Too-Many
TCGA.AA.A01Z	8	40973566	43086927	450	0.5022	SMALL-GAIN	NONFOCAL	23	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AA.3532	8	41201247	146293413	29895	0.5122	SMALL-GAIN	NONFOCAL	424	Too-Many
TCGA.AG.A036.01A	8	41241892	146250167	3979	0.5736	SMALL-GAIN	NONFOCAL	423	Too-Many
TCGA.AG.3883	8	41334260	43499144	367	0.5895	SMALL-GAIN	NONFOCAL	23	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.CA.6719	8	41509258	146293413	29739	0.4839	SMALL-GAIN	NONFOCAL	420	Too-Many
TCGA.F4.6805	8	41600124	63044941	4806	0.4558	SMALL-GAIN	NONFOCAL	64	"ANK1,AP3M2,ASPH,ATP6V1H,C8orf22,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,CYP7A1,DKK4,EFCAB1,FAM110B,FAM150A,FNTA,HGSNAT,HOOK3,IKBKB,IMPAD1,KAT6A,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PLAT,POLB,POMK,POTEA,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,SDCBP,SDR16C5,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,THAP1,TMEM68,TOX,UBE2V2,UBXN2B,VDAC3,XKR4"
TCGA.AG.A00Y.01A	8	41615537	42940286	146	0.6621	SMALL-GAIN	NONFOCAL	16	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,HOOK3,IKBKB,KAT6A,PLAT,POLB,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.A6.5657	8	41637359	146293413	29695	0.4154	SMALL-GAIN	NONFOCAL	420	Too-Many
TCGA.CM.6172	8	41670951	46924356	265	0.5822	SMALL-GAIN	NONFOCAL	19	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,KAT6A,PLAT,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.CK.5912	8	41701317	42852443	190	0.4599	SMALL-GAIN	NONFOCAL	15	"ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,HOOK3,IKBKB,KAT6A,PLAT,POLB,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AF.3911	8	41938237	63026128	4712	0.4944	SMALL-GAIN	NONFOCAL	62	"AP3M2,ASPH,ATP6V1H,C8orf22,CA8,CEBPD,CHCHD7,CHD7,CHRNA6,CHRNB3,CLVS1,CYP7A1,DKK4,EFCAB1,FAM110B,FAM150A,FNTA,HGSNAT,HOOK3,IKBKB,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PLAT,POLB,POMK,POTEA,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RNF170,RP1,RPS20,SDCBP,SDR16C5,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,THAP1,TMEM68,TOX,UBE2V2,UBXN2B,VDAC3,XKR4"
TCGA.CM.5862	8	42171056	55500225	2164	0.4722	SMALL-GAIN	NONFOCAL	37	"ATP6V1H,C8orf22,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FAM150A,FNTA,HGSNAT,HOOK3,IKBKB,LYPLA1,MCM4,MRPL15,NPBWR1,OPRK1,PCMTD1,POLB,POMK,POTEA,PRKDC,PXDNL,RB1CC1,RGS20,RNF170,SLC20A2,SMIM19,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,THAP1,UBE2V2,VDAC3"
TCGA.AH.6549.01A	8	42229028	43054490	96	0.5072	SMALL-GAIN	NONFOCAL	13	"CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,POLB,POMK,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.G4.6299	8	42330369	98487366	14050	0.6663	SMALL-GAIN	NONFOCAL	190	Too-Many
TCGA.DY.A0XA	8	42367879	146293413	29573	0.557	SMALL-GAIN	NONFOCAL	412	Too-Many
TCGA.AM.5821	8	42409446	50658624	691	0.4051	SMALL-GAIN	NONFOCAL	17	"C8orf22,CEBPD,CHRNA6,CHRNB3,EFCAB1,FNTA,HGSNAT,HOOK3,MCM4,POMK,POTEA,PRKDC,RNF170,SNAI2,SPIDR,THAP1,UBE2V2"
TCGA.CM.4752	8	42409446	107860139	16624	0.6278	SMALL-GAIN	NONFOCAL	231	Too-Many
TCGA.AA.3870	8	42468347	129745067	23613	0.3859	SMALL-GAIN	NONFOCAL	294	Too-Many
TCGA.5M.AAT6	8	42686198	146293413	29549	0.4342	SMALL-GAIN	NONFOCAL	408	Too-Many
TCGA.F5.6464	8	42686198	146293413	29556	0.442	SMALL-GAIN	NONFOCAL	408	Too-Many
TCGA.A6.6137	8	43108206	146293413	29537	0.4524	SMALL-GAIN	NONFOCAL	402	Too-Many
TCGA.AA.A004.01A	8	43172418	146279416	3208	0.5406	SMALL-GAIN	NONFOCAL	402	Too-Many
TCGA.AA.A02E.01A	8	43173552	68004022	605	0.4724	SMALL-GAIN	NONFOCAL	71	"ADHFE1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CLVS1,COPS5,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,FAM110B,FAM150A,GGH,IMPAD1,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,POTEA,PPP1R42,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TCF24,TGS1,TMEM68,TOX,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.AA.3488	8	43663674	121977327	20519	0.6283	SMALL-GAIN	NONFOCAL	256	Too-Many
TCGA.AA.3662	8	43679529	72200465	6816	0.6039	SMALL-GAIN	NONFOCAL	82	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,EYA1,FAM110B,FAM150A,GGH,IMPAD1,LACTB2,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NCOA2,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PRDM14,PREX2,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SLCO5A1,SNAI2,SNTG1,SOX17,SPIDR,ST18,SULF1,TCEA1,TCF24,TGS1,TMEM68,TOX,TRAM1,TRIM55,TTPA,UBE2V2,UBXN2B,VCPIP1,XKR4,XKR9,YTHDF3"
TCGA.A6.6140	8	43762680	146293413	29493	0.3909	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.DM.A1D0	8	46924210	90574471	11570	0.4533	SMALL-GAIN	NONFOCAL	140	Too-Many
TCGA.5M.AAT4	8	46924210	108341750	16706	0.5554	SMALL-GAIN	NONFOCAL	223	Too-Many
TCGA.AD.6965	8	46924210	116597038	18658	0.457	SMALL-GAIN	NONFOCAL	236	Too-Many
TCGA.NH.A6GA	8	46924210	122348300	20662	0.4535	SMALL-GAIN	NONFOCAL	256	Too-Many
TCGA.AG.4008	8	46924210	136217861	26099	0.5219	SMALL-GAIN	NONFOCAL	302	Too-Many
TCGA.DM.A28H	8	46924210	139175624	27431	0.6398	SMALL-GAIN	NONFOCAL	304	Too-Many
TCGA.AA.3856	8	46924210	146293413	29500	0.612	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.AA.3858	8	46924210	146293413	29495	0.6087	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.CM.6166	8	46924210	146293413	29480	0.42	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.D5.5538	8	46924210	146293413	29455	0.4057	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.G4.6303	8	46924210	146293413	29487	0.6546	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.G4.6314	8	46924210	146293413	29483	0.4384	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.RU.A8FL	8	46924356	62152673	4199	0.4687	SMALL-GAIN	NONFOCAL	43	"ATP6V1H,C8orf22,CA8,CEBPD,CHCHD7,CHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,TOX,UBE2V2,UBXN2B,XKR4"
TCGA.AF.2690	8	46924356	137688229	26830	0.5186	SMALL-GAIN	NONFOCAL	303	Too-Many
TCGA.A6.2675	8	46936839	60035522	3551	0.4298	SMALL-GAIN	NONFOCAL	40	"ATP6V1H,C8orf22,CEBPD,CHCHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,TOX,UBE2V2,UBXN2B,XKR4"
TCGA.AA.3514	8	47397088	146293413	29437	0.41	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.EF.5830	8	47397702	54866147	1799	0.5283	SMALL-GAIN	NONFOCAL	18	"ATP6V1H,C8orf22,CEBPD,EFCAB1,FAM150A,MCM4,NPBWR1,OPRK1,PCMTD1,PRKDC,PXDNL,RB1CC1,RGS20,SNAI2,SNTG1,SPIDR,ST18,UBE2V2"
TCGA.AA.3966	8	47759711	146293413	29370	0.4353	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.AA.3982	8	47817532	59687562	3339	0.6508	SMALL-GAIN	NONFOCAL	39	"ATP6V1H,C8orf22,CEBPD,CHCHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,UBE2V2,UBXN2B,XKR4"
TCGA.F5.6863	8	47914921	146293413	29303	0.6688	SMALL-GAIN	NONFOCAL	401	Too-Many
TCGA.AG.A011.01A	8	48308934	146171369	3356	0.4372	SMALL-GAIN	NONFOCAL	400	Too-Many
TCGA.AZ.4308	8	48795664	103811091	15152	0.4093	SMALL-GAIN	NONFOCAL	206	Too-Many
TCGA.DM.A28G	8	49055764	146293413	29231	0.5376	SMALL-GAIN	NONFOCAL	396	Too-Many
TCGA.DC.6155	8	49341417	146293413	29087	0.4127	SMALL-GAIN	NONFOCAL	396	Too-Many
TCGA.AA.A00D.01A	8	49647584	54669067	75	0.5055	SMALL-GAIN	NONFOCAL	12	"ATP6V1H,C8orf22,EFCAB1,FAM150A,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,SNAI2,SNTG1,ST18"
TCGA.A6.3808.01A	8	49647584	54745497	110	0.4249	SMALL-GAIN	NONFOCAL	12	"ATP6V1H,C8orf22,EFCAB1,FAM150A,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,SNAI2,SNTG1,ST18"
TCGA.A6.6652	8	49717483	76524362	7974	0.436	SMALL-GAIN	NONFOCAL	94	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CRISPLD1,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EYA1,FAM110B,FAM150A,GDAP1,GGH,HNF4G,IMPAD1,JPH1,KCNB2,LACTB2,LY96,LYN,LYPLA1,MCMDC2,MOS,MRPL15,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PI15,PLAG1,PPP1R42,PRDM14,PREX2,PXDNL,RAB2A,RB1CC1,RDH10,RGS20,RP1,RPL7,RPS20,RRS1,SBSPON,SDCBP,SDR16C5,SGK3,SLCO5A1,SNAI2,SNTG1,SOX17,ST18,STAU2,SULF1,TCEA1,TCEB1,TCF24,TERF1,TGS1,TMEM68,TMEM70,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,UBXN2B,VCPIP1,XKR4,XKR9,YTHDF3"
TCGA.AZ.5403	8	50780553	129530491	22812	0.4107	SMALL-GAIN	NONFOCAL	277	Too-Many
TCGA.QG.A5Z1	8	51805574	70199860	5349	0.483	SMALL-GAIN	NONFOCAL	65	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,FAM110B,FAM150A,GGH,IMPAD1,LYN,LYPLA1,MCMDC2,MOS,MRPL15,MTFR1,MYBL1,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PREX2,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SOX17,ST18,TCEA1,TCF24,TGS1,TMEM68,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,XKR4,YTHDF3"
TCGA.AY.A8YK	8	51980970	59104100	2318	0.5464	SMALL-GAIN	NONFOCAL	26	"ATP6V1H,CHCHD7,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MOS,MRPL15,NPBWR1,OPRK1,PCMTD1,PENK,PLAG1,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDR16C5,SOX17,ST18,TCEA1,TGS1,TMEM68,XKR4"
TCGA.AA.3941	8	52029419	58190273	1980	0.4681	SMALL-GAIN	NONFOCAL	25	"ATP6V1H,CHCHD7,FAM150A,IMPAD1,LYN,LYPLA1,MOS,MRPL15,NPBWR1,OPRK1,PCMTD1,PENK,PLAG1,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDR16C5,SOX17,ST18,TCEA1,TGS1,TMEM68,XKR4"
TCGA.DC.6154	8	52133621	116253682	17631	0.6743	SMALL-GAIN	NONFOCAL	226	Too-Many
TCGA.EI.6513	8	52558394	146293413	28387	0.4444	SMALL-GAIN	NONFOCAL	392	Too-Many
TCGA.DY.A1DC	8	52745999	59707950	2271	0.6605	SMALL-GAIN	NONFOCAL	29	"ATP6V1H,CHCHD7,CYP7A1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SOX17,ST18,TCEA1,TGS1,TMEM68,UBXN2B,XKR4"
TCGA.AA.A00L.01A	8	53049087	87680196	852	0.3957	SMALL-GAIN	NONFOCAL	126	Too-Many
TCGA.AA.3664	8	54919890	122209160	18785	0.3988	SMALL-GAIN	NONFOCAL	238	Too-Many
TCGA.EF.5830	8	54937830	90429704	9735	0.5343	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.AA.3984	8	55445567	146293413	27450	0.4033	SMALL-GAIN	NONFOCAL	379	Too-Many
TCGA.D5.5540	8	55711574	61262753	1847	0.4534	SMALL-GAIN	NONFOCAL	18	"CA8,CHCHD7,CYP7A1,FAM110B,IMPAD1,LYN,MOS,NSMAF,PENK,PLAG1,RPS20,SDCBP,SDR16C5,TGS1,TMEM68,TOX,UBXN2B,XKR4"
TCGA.CA.6715	8	56687266	70163441	3801	0.4839	SMALL-GAIN	NONFOCAL	49	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,FAM110B,GGH,IMPAD1,LYN,MCMDC2,MOS,MTFR1,MYBL1,NKAIN3,NSMAF,PDE7A,PENK,PLAG1,PPP1R42,PREX2,RAB2A,RPS20,RRS1,SDCBP,SDR16C5,SGK3,TCF24,TGS1,TOX,TRIM55,TTPA,UBXN2B,VCPIP1,YTHDF3"
TCGA.AZ.6598	8	56944110	105978367	13440	0.5048	SMALL-GAIN	NONFOCAL	192	Too-Many
TCGA.CL.5918	8	56998479	73185997	4665	0.4003	SMALL-GAIN	NONFOCAL	56	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EYA1,FAM110B,GGH,IMPAD1,LACTB2,MCMDC2,MOS,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NSMAF,PDE7A,PENK,PLAG1,PPP1R42,PRDM14,PREX2,RAB2A,RRS1,SDCBP,SDR16C5,SGK3,SLCO5A1,SULF1,TCF24,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBXN2B,VCPIP1,XKR9,YTHDF3"
TCGA.AA.3509.01A	8	57285580	67344683	234	0.6191	SMALL-GAIN	NONFOCAL	26	"ARMC1,ASPH,BHLHE22,CA8,CHD7,CLVS1,CRH,CYP7A1,CYP7B1,DNAJC5B,FAM110B,GGH,IMPAD1,MTFR1,NKAIN3,NSMAF,PDE7A,PENK,RAB2A,RRS1,SDCBP,TOX,TRIM55,TTPA,UBXN2B,YTHDF3"
TCGA.AA.A00N.01A	8	59358419	63930000	144	0.5796	SMALL-GAIN	NONFOCAL	12	"ASPH,CA8,CHD7,CLVS1,CYP7A1,GGH,NKAIN3,NSMAF,RAB2A,SDCBP,TOX,UBXN2B"
TCGA.AA.3976	8	59580353	146293413	26069	0.5895	SMALL-GAIN	NONFOCAL	362	Too-Many
TCGA.AY.A8YK	8	59790209	76620650	4862	0.5646	SMALL-GAIN	NONFOCAL	61	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,C8orf89,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CRISPLD1,CSPP1,CYP7B1,DNAJC5B,EYA1,GDAP1,GGH,HNF4G,JPH1,KCNB2,LACTB2,LY96,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,PDE7A,PI15,PPP1R42,PRDM14,PREX2,RAB2A,RDH10,RPL7,RRS1,SBSPON,SGK3,SLCO5A1,STAU2,SULF1,TCEB1,TCF24,TERF1,TMEM70,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBE2W,VCPIP1,XKR9,YTHDF3"
TCGA.A6.2675	8	60043129	146293413	25726	0.4215	SMALL-GAIN	NONFOCAL	361	Too-Many
TCGA.AG.A016.01A	8	61121294	94767106	943	0.6678	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AA.3842	8	61446149	146293413	25528	0.4433	SMALL-GAIN	NONFOCAL	360	Too-Many
TCGA.AF.A56K	8	62441023	128754870	18747	0.6733	SMALL-GAIN	NONFOCAL	241	Too-Many
TCGA.AF.3911	8	63043037	112827867	13292	0.556	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.F4.6805	8	63062580	146293413	24921	0.4631	SMALL-GAIN	NONFOCAL	356	Too-Many
TCGA.DY.A1H8	8	64468530	146293413	24558	0.4757	SMALL-GAIN	NONFOCAL	352	Too-Many
TCGA.D5.5540	8	64590243	146293413	24533	0.4651	SMALL-GAIN	NONFOCAL	352	Too-Many
TCGA.CK.4948.01B	8	65517239	68131615	167	0.4133	SMALL-GAIN	NONFOCAL	21	"ADHFE1,ARFGEF1,ARMC1,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CRH,CSPP1,CYP7B1,DNAJC5B,MCMDC2,MTFR1,MYBL1,PDE7A,PPP1R42,RRS1,SGK3,TCF24,TRIM55,VCPIP1"
TCGA.AA.3941	8	66324292	68657030	427	0.4999	SMALL-GAIN	NONFOCAL	21	"ADHFE1,ARFGEF1,ARMC1,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CPA6,CRH,CSPP1,DNAJC5B,MCMDC2,MTFR1,MYBL1,PDE7A,PPP1R42,RRS1,SGK3,TCF24,TRIM55,VCPIP1"
TCGA.AA.A01D.01A	8	66616917	120854005	1803	0.5292	SMALL-GAIN	NONFOCAL	199	Too-Many
TCGA.AA.3982	8	67224882	69080035	399	0.6636	SMALL-GAIN	NONFOCAL	16	"ADHFE1,ARFGEF1,C8orf44,C8orf44-SGK3,C8orf46,COPS5,CPA6,CSPP1,MCMDC2,MYBL1,PPP1R42,PREX2,RRS1,SGK3,TCF24,VCPIP1"
TCGA.AA.A01Z	8	67296738	140921338	22879	0.4943	SMALL-GAIN	NONFOCAL	250	Too-Many
TCGA.AG.A01W.01A	8	68131272	74366292	273	0.3808	SMALL-GAIN	NONFOCAL	21	"ARFGEF1,C8orf34,C8orf89,CPA6,EYA1,KCNB2,LACTB2,MSC,NCOA2,PRDM14,PREX2,RDH10,RPL7,SBSPON,SLCO5A1,STAU2,SULF1,TERF1,TRAM1,TRPA1,XKR9"
TCGA.AA.3509.01A	8	68137101	87570468	527	0.6348	SMALL-GAIN	NONFOCAL	66	"ARFGEF1,ATP6V0D2,C8orf34,C8orf59,C8orf89,CA1,CA13,CA2,CA3,CHMP4C,CPA6,CPNE3,CRISPLD1,E2F5,EYA1,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,KCNB2,LACTB2,LRRCC1,LY96,MRPS28,MSC,NCOA2,PAG1,PEX2,PI15,PKIA,PMP2,PRDM14,PREX2,PSKH2,RALYL,RDH10,RMDN1,RPL7,SBSPON,SLC10A5,SLC7A13,SLCO5A1,SNX16,STAU2,STMN2,SULF1,TCEB1,TERF1,TMEM70,TPD52,TRAM1,TRPA1,UBE2W,WWP1,XKR9,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.CK.4948.01B	8	68150531	73993204	216	0.4537	SMALL-GAIN	NONFOCAL	17	"ARFGEF1,C8orf34,CPA6,EYA1,KCNB2,LACTB2,MSC,NCOA2,PRDM14,PREX2,SBSPON,SLCO5A1,SULF1,TERF1,TRAM1,TRPA1,XKR9"
TCGA.A6.2677	8	68330395	75075279	2087	0.6628	SMALL-GAIN	NONFOCAL	24	"C8orf34,C8orf89,CPA6,EYA1,KCNB2,LACTB2,LY96,MSC,NCOA2,PRDM14,PREX2,RDH10,RPL7,SBSPON,SLCO5A1,STAU2,SULF1,TCEB1,TERF1,TMEM70,TRAM1,TRPA1,UBE2W,XKR9"
TCGA.QG.A5Z1	8	70215371	77423273	2253	0.4993	SMALL-GAIN	NONFOCAL	26	"C8orf89,CRISPLD1,EYA1,GDAP1,HNF4G,JPH1,KCNB2,LACTB2,LY96,MSC,NCOA2,PI15,PRDM14,RDH10,RPL7,SBSPON,SLCO5A1,STAU2,SULF1,TCEB1,TERF1,TMEM70,TRAM1,TRPA1,UBE2W,XKR9"
TCGA.CA.6715	8	70539574	146293413	22975	0.4989	SMALL-GAIN	NONFOCAL	327	Too-Many
TCGA.AZ.4684.01A	8	72111539	75756166	111	0.5411	SMALL-GAIN	NONFOCAL	17	"C8orf89,EYA1,GDAP1,JPH1,KCNB2,LY96,MSC,PI15,RDH10,RPL7,SBSPON,STAU2,TCEB1,TERF1,TMEM70,TRPA1,UBE2W"
TCGA.AA.3662	8	72212180	77734362	1802	0.6162	SMALL-GAIN	NONFOCAL	20	"C8orf89,CRISPLD1,EYA1,GDAP1,HNF4G,JPH1,KCNB2,LY96,MSC,PI15,RDH10,RPL7,SBSPON,STAU2,TCEB1,TERF1,TMEM70,TRPA1,UBE2W,ZFHX4"
TCGA.AA.3867	8	72715400	76634644	1343	0.5453	SMALL-GAIN	NONFOCAL	18	"C8orf89,CRISPLD1,GDAP1,HNF4G,JPH1,KCNB2,LY96,MSC,PI15,RDH10,RPL7,SBSPON,STAU2,TCEB1,TERF1,TMEM70,TRPA1,UBE2W"
TCGA.A6.2671	8	73019938	118833742	12241	0.5007	SMALL-GAIN	NONFOCAL	159	Too-Many
TCGA.AG.3726	8	73162268	109242802	9786	0.4001	SMALL-GAIN	NONFOCAL	141	Too-Many
TCGA.CL.5918	8	73191129	146293413	22213	0.4084	SMALL-GAIN	NONFOCAL	317	Too-Many
TCGA.A6.5666	8	73451474	77109049	1159	0.6724	SMALL-GAIN	NONFOCAL	16	"C8orf89,CRISPLD1,GDAP1,HNF4G,JPH1,KCNB2,LY96,PI15,RDH10,RPL7,SBSPON,STAU2,TCEB1,TERF1,TMEM70,UBE2W"
TCGA.CK.4948.01B	8	74205743	87641095	320	0.4831	SMALL-GAIN	NONFOCAL	49	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CHMP4C,CNGB3,CPNE3,CRISPLD1,E2F5,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,LRRCC1,LY96,MRPS28,PAG1,PEX2,PI15,PKIA,PMP2,PSKH2,RALYL,RDH10,RMDN1,RPL7,SLC10A5,SLC7A13,SNX16,STAU2,STMN2,TCEB1,TMEM70,TPD52,UBE2W,WWP1,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.AA.3556	8	74447289	86114267	2885	0.4554	SMALL-GAIN	NONFOCAL	35	"CHMP4C,CRISPLD1,E2F5,FABP12,FABP4,FABP5,FABP9,GDAP1,HEY1,HNF4G,IL7,IMPA1,JPH1,LRRCC1,LY96,MRPS28,PAG1,PEX2,PI15,PKIA,PMP2,RALYL,SLC10A5,SNX16,STAU2,STMN2,TCEB1,TMEM70,TPD52,UBE2W,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.DM.A28F	8	75207652	137681618	18830	0.6218	SMALL-GAIN	NONFOCAL	208	Too-Many
TCGA.A6.2677	8	75630493	80980044	1207	0.6369	SMALL-GAIN	NONFOCAL	12	"CRISPLD1,HEY1,HNF4G,IL7,MRPS28,PEX2,PI15,PKIA,STMN2,TPD52,ZC2HC1A,ZFHX4"
TCGA.AA.A017.01A	8	75925095	146279416	2339	0.4125	SMALL-GAIN	NONFOCAL	303	Too-Many
TCGA.CM.5348	8	76059569	146293413	21285	0.5575	SMALL-GAIN	NONFOCAL	302	Too-Many
TCGA.AY.A8YK	8	77085556	83872987	1695	0.5445	SMALL-GAIN	NONFOCAL	22	"CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,MRPS28,PAG1,PEX2,PKIA,PMP2,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZFHX4,ZNF704"
TCGA.A6.3807	8	78110292	84225399	1514	0.5098	SMALL-GAIN	NONFOCAL	20	"CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,MRPS28,PAG1,PKIA,PMP2,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZNF704"
TCGA.DM.A1DB	8	79276062	146293413	20474	0.4088	SMALL-GAIN	NONFOCAL	299	Too-Many
TCGA.AD.6548	8	79451369	146293413	20382	0.464	SMALL-GAIN	NONFOCAL	299	Too-Many
TCGA.AA.3867	8	79581627	82353593	726	0.6214	SMALL-GAIN	NONFOCAL	11	"FABP5,HEY1,IL7,MRPS28,PAG1,PMP2,STMN2,TPD52,ZBTB10,ZC2HC1A,ZNF704"
TCGA.AY.4070	8	79766498	146293413	20297	0.6251	SMALL-GAIN	NONFOCAL	296	Too-Many
TCGA.A6.5662	8	80106292	90703904	2490	0.4861	SMALL-GAIN	NONFOCAL	35	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CHMP4C,CNBD1,CNGB3,CPNE3,DCAF4L2,E2F5,FABP12,FABP4,FABP5,FABP9,HEY1,IMPA1,LRRCC1,MMP16,MRPS28,PAG1,PMP2,PSKH2,RALYL,RMDN1,SLC10A5,SLC7A13,SNX16,STMN2,TPD52,WWP1,ZBTB10,ZFAND1,ZNF704"
TCGA.A6.2677	8	81276902	92241459	2287	0.6189	SMALL-GAIN	NONFOCAL	43	"ATP6V0D2,C8orf59,C8orf88,CA1,CA13,CA2,CA3,CALB1,CHMP4C,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,FABP12,FABP4,FABP5,FABP9,IMPA1,LRRC69,LRRCC1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PAG1,PMP2,PSKH2,RALYL,RIPK2,RMDN1,SLC10A5,SLC26A7,SLC7A13,SNX16,TMEM55A,TMEM64,WWP1,ZBTB10,ZFAND1,ZNF704"
TCGA.AG.3731	8	81477366	93346830	2720	0.6729	SMALL-GAIN	NONFOCAL	43	"ATP6V0D2,C8orf59,C8orf88,CA1,CA13,CA2,CA3,CALB1,CHMP4C,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,FABP12,FABP4,FABP5,FABP9,IMPA1,LRRC69,LRRCC1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PAG1,PMP2,PSKH2,RALYL,RIPK2,RMDN1,RUNX1T1,SLC10A5,SLC26A7,SLC7A13,SNX16,TMEM55A,TMEM64,WWP1,ZFAND1,ZNF704"
TCGA.QG.A5Z1	8	84924866	114816319	7730	0.4972	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.A6.5656	8	85033570	87848870	562	0.4742	SMALL-GAIN	NONFOCAL	15	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CNGB3,CPNE3,E2F5,LRRCC1,PSKH2,RALYL,RMDN1,SLC7A13,WWP1"
TCGA.AY.A8YK	8	85033570	89944413	1016	0.5355	SMALL-GAIN	NONFOCAL	18	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CNBD1,CNGB3,CPNE3,DCAF4L2,E2F5,LRRCC1,MMP16,PSKH2,RALYL,RMDN1,SLC7A13,WWP1"
TCGA.AA.3556	8	86156706	146293413	18809	0.4299	SMALL-GAIN	NONFOCAL	275	Too-Many
TCGA.A6.6652	8	87536969	146293413	18606	0.4341	SMALL-GAIN	NONFOCAL	266	Too-Many
TCGA.AA.A00D.01A	8	87559868	95792529	229	0.6593	SMALL-GAIN	NONFOCAL	31	"C8orf87,C8orf88,CALB1,CDH17,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,DPY19L4,ESRP1,FAM92A1,FSBP,GEM,KIAA1429,LRRC69,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PDP1,RAD54B,RBM12B,RIPK2,RUNX1T1,SLC26A7,TMEM55A,TMEM64,TMEM67,TRIQK"
TCGA.CK.4948.01B	8	87666169	133790029	1710	0.4864	SMALL-GAIN	NONFOCAL	160	Too-Many
TCGA.AZ.4614	8	88419722	146293413	18165	0.4857	SMALL-GAIN	NONFOCAL	263	Too-Many
TCGA.F5.6571	8	89760619	112757738	6383	0.4388	SMALL-GAIN	NONFOCAL	94	"ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,C8orf87,C8orf88,CALB1,CCNE2,CDH17,COX6C,CPQ,CTHRC1,DCAF13,DCSTAMP,DECR1,DPY19L4,DPYS,EBAG9,EIF3E,EMC2,ENY2,ERICH5,ESRP1,FAM92A1,FBXO43,FSBP,FZD6,GDF6,GEM,GRHL2,HRSP12,INTS8,KCNS2,KCNV1,KIAA1429,KLF10,LAPTM4B,LRP12,LRRC69,MATN2,MTDH,MTERF3,NBN,NCALD,NDUFAF6,NECAB1,NIPAL2,NUDCD1,ODF1,OSGIN2,OSR2,OTUD6B,OXR1,PABPC1,PDP1,PKHD1L1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RBM12B,RGS22,RIMS2,RIPK2,RNF19A,RPL30,RRM2B,RSPO2,RUNX1T1,SDC2,SLC25A32,SLC26A7,SNX31,SPAG1,STK3,SYBU,TMEM55A,TMEM64,TMEM67,TMEM74,TP53INP1,TRHR,TRIQK,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AY.A8YK	8	90185422	94873834	1094	0.5374	SMALL-GAIN	NONFOCAL	18	"C8orf87,C8orf88,CALB1,DECR1,FAM92A1,LRRC69,NBN,NECAB1,OSGIN2,OTUD6B,RBM12B,RIPK2,RUNX1T1,SLC26A7,TMEM55A,TMEM64,TMEM67,TRIQK"
TCGA.AA.3679	8	90656738	146293413	17826	0.3926	SMALL-GAIN	NONFOCAL	261	Too-Many
TCGA.EF.5830	8	90677152	146293413	17776	0.5727	SMALL-GAIN	NONFOCAL	261	Too-Many
TCGA.DM.A1D0	8	90739479	138919756	15595	0.4711	SMALL-GAIN	NONFOCAL	163	Too-Many
TCGA.A6.5662	8	90948011	146293413	17689	0.5258	SMALL-GAIN	NONFOCAL	259	Too-Many
TCGA.CA.5797	8	91008282	94956946	873	0.4952	SMALL-GAIN	NONFOCAL	16	"C8orf87,C8orf88,CALB1,DECR1,FAM92A1,LRRC69,NECAB1,OTUD6B,PDP1,RBM12B,RUNX1T1,SLC26A7,TMEM55A,TMEM64,TMEM67,TRIQK"
TCGA.G4.6626	8	91419209	146293413	17613	0.4219	SMALL-GAIN	NONFOCAL	256	Too-Many
TCGA.AG.3598	8	93358409	146293413	17168	0.5756	SMALL-GAIN	NONFOCAL	248	Too-Many
TCGA.AA.3941	8	94400283	96473323	656	0.6261	SMALL-GAIN	NONFOCAL	17	"C8orf37,CCNE2,CDH17,DPY19L4,ESRP1,FAM92A1,FSBP,GEM,INTS8,KIAA1429,NDUFAF6,PDP1,PLEKHF2,RAD54B,RBM12B,TMEM67,TP53INP1"
TCGA.AY.A8YK	8	95316255	100582031	1534	0.5518	SMALL-GAIN	NONFOCAL	30	"C8orf37,CCNE2,CPQ,DPY19L4,ERICH5,ESRP1,FSBP,GDF6,HRSP12,INTS8,KCNS2,KIAA1429,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,NIPAL2,OSR2,PLEKHF2,POP1,PTDSS1,RAD54B,RPL30,SDC2,STK3,TP53INP1,TSPYL5,UQCRB,VPS13B"
TCGA.AY.6196	8	95380955	132153402	11490	0.418	SMALL-GAIN	NONFOCAL	128	Too-Many
TCGA.AA.3872	8	95459347	104060259	2568	0.496	SMALL-GAIN	NONFOCAL	48	"ANKRD46,ATP6V1C1,AZIN1,C8orf37,CCNE2,COX6C,CPQ,DPY19L4,ERICH5,ESRP1,FBXO43,GDF6,GRHL2,HRSP12,INTS8,KCNS2,KIAA1429,KLF10,LAPTM4B,MATN2,MTDH,MTERF3,NCALD,NDUFAF6,NIPAL2,ODF1,OSR2,PABPC1,PLEKHF2,POLR2K,POP1,PTDSS1,RAD54B,RGS22,RNF19A,RPL30,RRM2B,SDC2,SNX31,SPAG1,STK3,TP53INP1,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZNF706"
TCGA.AG.A01N.01A	8	95709037	99140543	161	0.4744	SMALL-GAIN	NONFOCAL	22	"C8orf37,CCNE2,CPQ,DPY19L4,ERICH5,ESRP1,GDF6,HRSP12,INTS8,LAPTM4B,MATN2,MTDH,MTERF3,NDUFAF6,PLEKHF2,POP1,PTDSS1,RPL30,SDC2,TP53INP1,TSPYL5,UQCRB"
TCGA.D5.5539	8	95844437	106790019	3265	0.5384	SMALL-GAIN	NONFOCAL	54	"ANKRD46,ATP6V1C1,AZIN1,BAALC,C8orf37,CCNE2,COX6C,CPQ,CTHRC1,DCAF13,DCSTAMP,DPYS,ERICH5,FBXO43,FZD6,GDF6,GRHL2,HRSP12,INTS8,KCNS2,KLF10,LAPTM4B,LRP12,MATN2,MTDH,MTERF3,NCALD,NDUFAF6,NIPAL2,ODF1,OSR2,PABPC1,PLEKHF2,POLR2K,POP1,PTDSS1,RGS22,RIMS2,RNF19A,RPL30,RRM2B,SDC2,SLC25A32,SNX31,SPAG1,STK3,TP53INP1,TSPYL5,UBR5,UQCRB,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AA.3980.01A	8	95897266	146279416	2170	0.5032	SMALL-GAIN	NONFOCAL	234	Too-Many
TCGA.AG.3909.01A	8	97296270	99786911	110	0.4958	SMALL-GAIN	NONFOCAL	14	"CPQ,ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,MTDH,NIPAL2,POP1,PTDSS1,RPL30,SDC2,STK3,TSPYL5"
TCGA.A6.3807	8	98759289	100191782	320	0.6592	SMALL-GAIN	NONFOCAL	11	"ERICH5,HRSP12,KCNS2,LAPTM4B,MATN2,NIPAL2,OSR2,POP1,RPL30,STK3,VPS13B"
TCGA.AA.A01K.01A	8	99101342	142175238	1514	0.442	SMALL-GAIN	NONFOCAL	128	Too-Many
TCGA.G4.6311	8	100021839	105242179	1441	0.6664	SMALL-GAIN	NONFOCAL	26	"ANKRD46,ATP6V1C1,AZIN1,BAALC,COX6C,CTHRC1,DCAF13,FBXO43,FZD6,GRHL2,KLF10,NCALD,ODF1,PABPC1,POLR2K,RGS22,RIMS2,RNF19A,RRM2B,SLC25A32,SNX31,SPAG1,UBR5,VPS13B,YWHAZ,ZNF706"
TCGA.A6.5666	8	100509871	102398443	515	0.6776	SMALL-GAIN	NONFOCAL	12	"ANKRD46,COX6C,FBXO43,PABPC1,POLR2K,RGS22,RNF19A,SNX31,SPAG1,VPS13B,YWHAZ,ZNF706"
TCGA.AY.A8YK	8	100670472	114880640	3877	0.555	SMALL-GAIN	NONFOCAL	45	"ABRA,ANGPT1,ANKRD46,ATP6V1C1,AZIN1,BAALC,COX6C,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,FBXO43,FZD6,GRHL2,KCNV1,KLF10,LRP12,NCALD,NUDCD1,ODF1,OXR1,PABPC1,PKHD1L1,POLR2K,RGS22,RIMS2,RNF19A,RRM2B,RSPO2,SLC25A32,SNX31,SPAG1,SYBU,TMEM74,TRHR,UBR5,VPS13B,YWHAZ,ZFPM2,ZNF706"
TCGA.AA.3509.01A	8	100778985	103305793	174	0.4942	SMALL-GAIN	NONFOCAL	16	"ANKRD46,COX6C,FBXO43,GRHL2,NCALD,PABPC1,POLR2K,RGS22,RNF19A,RRM2B,SNX31,SPAG1,UBR5,VPS13B,YWHAZ,ZNF706"
TCGA.F4.6460	8	102040815	118590074	4594	0.4284	SMALL-GAIN	NONFOCAL	41	"AARD,ABRA,ANGPT1,ATP6V1C1,AZIN1,BAALC,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EIF3H,EMC2,ENY2,FZD6,GRHL2,KCNV1,KLF10,LRP12,MED30,NCALD,NUDCD1,ODF1,OXR1,PKHD1L1,RAD21,RIMS2,RRM2B,RSPO2,SLC25A32,SLC30A8,SYBU,TMEM74,TRHR,TRPS1,UBR5,UTP23,ZFPM2,ZNF706"
TCGA.AA.A02H.01A	8	102212196	124142390	672	0.6321	SMALL-GAIN	NONFOCAL	59	"AARD,ABRA,ANGPT1,ATP6V1C1,AZIN1,BAALC,COL14A1,COLEC10,CSMD3,CTHRC1,DCAF13,DCSTAMP,DEPTOR,DERL1,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FZD6,GRHL2,HAS2,KCNV1,KLF10,LRP12,MAL2,MED30,MRPL13,MTBP,NCALD,NOV,NUDCD1,ODF1,OXR1,PKHD1L1,RAD21,RIMS2,RRM2B,RSPO2,SAMD12,SLC25A32,SLC30A8,SNTB1,SYBU,TAF2,TBC1D31,TMEM74,TNFRSF11B,TRHR,TRPS1,UBR5,UTP23,ZFPM2,ZHX2,ZNF706"
TCGA.AZ.6608	8	103201057	146293413	14236	0.6083	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.AA.3854	8	103281023	146235458	14279	0.4598	SMALL-GAIN	NONFOCAL	195	Too-Many
TCGA.AG.A01W.01A	8	103909920	109537271	153	0.4589	SMALL-GAIN	NONFOCAL	17	"ABRA,ANGPT1,ATP6V1C1,BAALC,CTHRC1,DCAF13,DCSTAMP,DPYS,EIF3E,EMC2,FZD6,LRP12,OXR1,RIMS2,RSPO2,SLC25A32,ZFPM2"
TCGA.AA.3956	8	104071688	114961982	2849	0.6708	SMALL-GAIN	NONFOCAL	26	"ABRA,ANGPT1,ATP6V1C1,BAALC,CSMD3,CTHRC1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,FZD6,KCNV1,LRP12,NUDCD1,OXR1,PKHD1L1,RIMS2,RSPO2,SLC25A32,SYBU,TMEM74,TRHR,ZFPM2"
TCGA.F5.6702	8	104366520	125755749	6307	0.4016	SMALL-GAIN	NONFOCAL	65	"AARD,ABRA,ANGPT1,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,CTHRC1,DCAF13,DCSTAMP,DEPTOR,DERL1,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KCNV1,KLHL38,LRP12,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RNF139,RSPO2,SAMD12,SLC25A32,SLC30A8,SNTB1,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRMT12,TRPS1,UTP23,WDYHV1,ZFPM2,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AA.3982	8	104438718	110691428	1784	0.4666	SMALL-GAIN	NONFOCAL	19	"ABRA,ANGPT1,DCAF13,DCSTAMP,DPYS,EBAG9,EIF3E,EMC2,ENY2,LRP12,NUDCD1,OXR1,PKHD1L1,RIMS2,RSPO2,SYBU,TMEM74,TRHR,ZFPM2"
TCGA.AA.A00N.01A	8	104447837	109455807	106	0.6695	SMALL-GAIN	NONFOCAL	11	"ABRA,ANGPT1,DCAF13,DCSTAMP,DPYS,EIF3E,LRP12,OXR1,RIMS2,RSPO2,ZFPM2"
TCGA.AA.3872	8	104546137	123030018	5313	0.3977	SMALL-GAIN	NONFOCAL	42	"AARD,ABRA,ANGPT1,COL14A1,COLEC10,CSMD3,DCSTAMP,DEPTOR,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,HAS2,KCNV1,LRP12,MAL2,MED30,MRPL13,MTBP,NOV,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RSPO2,SAMD12,SLC30A8,SNTB1,SYBU,TAF2,TMEM74,TNFRSF11B,TRHR,TRPS1,UTP23,ZFPM2"
TCGA.AA.A00D.01A	8	104709262	120831539	308	0.5558	SMALL-GAIN	NONFOCAL	35	"AARD,ABRA,ANGPT1,COLEC10,CSMD3,DCSTAMP,DPYS,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,KCNV1,LRP12,MAL2,MED30,NOV,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RSPO2,SAMD12,SLC30A8,SYBU,TAF2,TMEM74,TNFRSF11B,TRHR,TRPS1,UTP23,ZFPM2"
TCGA.A6.3808.01A	8	104831730	124109475	522	0.6246	SMALL-GAIN	NONFOCAL	45	"AARD,ABRA,ANGPT1,COL14A1,COLEC10,CSMD3,DCSTAMP,DEPTOR,DERL1,DPYS,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,HAS2,KCNV1,LRP12,MAL2,MED30,MRPL13,MTBP,NOV,NUDCD1,OXR1,PKHD1L1,RAD21,RIMS2,RSPO2,SAMD12,SLC30A8,SNTB1,SYBU,TAF2,TBC1D31,TMEM74,TNFRSF11B,TRHR,TRPS1,UTP23,ZFPM2,ZHX2"
TCGA.AZ.6598	8	106376595	126548202	6096	0.5045	SMALL-GAIN	NONFOCAL	63	"AARD,ABRA,ANGPT1,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KCNV1,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,NUDCD1,OXR1,PKHD1L1,RAD21,RNF139,RSPO2,SAMD12,SLC30A8,SNTB1,SQLE,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZFPM2,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.D5.5539	8	106835441	127399414	6269	0.565	SMALL-GAIN	NONFOCAL	62	"AARD,ABRA,ANGPT1,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KCNV1,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,NUDCD1,OXR1,PKHD1L1,RAD21,RNF139,RSPO2,SAMD12,SLC30A8,SNTB1,SQLE,SYBU,TAF2,TATDN1,TBC1D31,TMEM65,TMEM74,TNFRSF11B,TRHR,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.5M.AAT4	8	108364238	121896824	3794	0.4513	SMALL-GAIN	NONFOCAL	34	"AARD,ANGPT1,COL14A1,COLEC10,CSMD3,DEPTOR,DSCC1,EBAG9,EIF3E,EIF3H,EMC2,ENPP2,ENY2,EXT1,KCNV1,MAL2,MED30,MRPL13,MTBP,NOV,NUDCD1,PKHD1L1,RAD21,RSPO2,SAMD12,SLC30A8,SNTB1,SYBU,TAF2,TMEM74,TNFRSF11B,TRHR,TRPS1,UTP23"
TCGA.G4.6311	8	108445787	119496570	2959	0.4719	SMALL-GAIN	NONFOCAL	22	"AARD,ANGPT1,CSMD3,EBAG9,EIF3E,EIF3H,EMC2,ENY2,EXT1,KCNV1,MED30,NUDCD1,PKHD1L1,RAD21,RSPO2,SAMD12,SLC30A8,SYBU,TMEM74,TRHR,TRPS1,UTP23"
TCGA.AG.3742	8	108704413	146293413	12582	0.417	SMALL-GAIN	NONFOCAL	178	Too-Many
TCGA.A6.2677	8	109114300	116926699	1647	0.6401	SMALL-GAIN	NONFOCAL	12	"CSMD3,EBAG9,EIF3E,EMC2,ENY2,KCNV1,NUDCD1,PKHD1L1,SYBU,TMEM74,TRHR,TRPS1"
TCGA.AG.A01W.01A	8	110561390	120324823	184	0.5	SMALL-GAIN	NONFOCAL	16	"AARD,COLEC10,CSMD3,EBAG9,EIF3H,EXT1,KCNV1,MAL2,MED30,RAD21,SAMD12,SLC30A8,SYBU,TNFRSF11B,TRPS1,UTP23"
TCGA.A6.3807	8	110692205	124122513	3897	0.5367	SMALL-GAIN	NONFOCAL	28	"AARD,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,HAS2,KCNV1,MAL2,MED30,MRPL13,MTBP,NOV,RAD21,SAMD12,SLC30A8,SNTB1,SYBU,TAF2,TBC1D31,TNFRSF11B,TRPS1,UTP23,ZHX2"
TCGA.AG.3727	8	112934593	127300077	4635	0.4371	SMALL-GAIN	NONFOCAL	48	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AZ.4308	8	113432765	146293413	11551	0.4312	SMALL-GAIN	NONFOCAL	167	Too-Many
TCGA.CK.5914.01A	8	113529226	120831539	160	0.5311	SMALL-GAIN	NONFOCAL	16	"AARD,COLEC10,CSMD3,EIF3H,ENPP2,EXT1,MAL2,MED30,NOV,RAD21,SAMD12,SLC30A8,TAF2,TNFRSF11B,TRPS1,UTP23"
TCGA.AF.3911	8	114124832	126540586	4079	0.6776	SMALL-GAIN	NONFOCAL	48	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,NSMCE2,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.CK.6746	8	114139596	146293413	11370	0.5189	SMALL-GAIN	NONFOCAL	167	Too-Many
TCGA.DC.4745	8	114161965	136766978	8366	0.393	SMALL-GAIN	NONFOCAL	69	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,CSMD3,DEPTOR,DERL1,DSCC1,EFR3A,EIF3H,ENPP2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,HHLA1,KCNQ3,KHDRBS3,KIAA0196,KLHL38,LRRC6,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDRG1,NDUFB9,NOV,NSMCE2,OC90,PHF20L1,POU5F1B,RAD21,RNF139,SAMD12,SLA,SLC30A8,SNTB1,SQLE,ST3GAL1,TAF2,TATDN1,TBC1D31,TG,TMEM65,TMEM71,TNFRSF11B,TRIB1,TRMT12,TRPS1,UTP23,WDYHV1,WISP1,ZFAT,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AG.A014.01A	8	114448879	145735711	1113	0.4783	SMALL-GAIN	NONFOCAL	153	Too-Many
TCGA.DM.A28K	8	115368723	146293413	11100	0.4969	SMALL-GAIN	NONFOCAL	166	Too-Many
TCGA.QG.A5Z1	8	116185708	146293413	10801	0.4818	SMALL-GAIN	NONFOCAL	166	Too-Many
TCGA.AD.6965	8	116601070	146293413	10750	0.4747	SMALL-GAIN	NONFOCAL	166	Too-Many
TCGA.AF.3913	8	116879507	138306230	8242	0.3985	SMALL-GAIN	NONFOCAL	67	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EFR3A,EIF3H,ENPP2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,HHLA1,KCNQ3,KHDRBS3,KIAA0196,KLHL38,LRRC6,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDRG1,NDUFB9,NOV,NSMCE2,OC90,PHF20L1,POU5F1B,RAD21,RNF139,SAMD12,SLA,SLC30A8,SNTB1,SQLE,ST3GAL1,TAF2,TATDN1,TBC1D31,TG,TMEM65,TMEM71,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,WISP1,ZFAT,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AY.A8YK	8	117068938	129014696	4353	0.576	SMALL-GAIN	NONFOCAL	49	"AARD,ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EIF3H,ENPP2,EXT1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AG.3594	8	117430214	133415475	6009	0.4302	SMALL-GAIN	NONFOCAL	57	"AARD,ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,EFR3A,EIF3H,ENPP2,EXT1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,HHLA1,KCNQ3,KIAA0196,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,OC90,POU5F1B,RAD21,RNF139,SAMD12,SLC30A8,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,UTP23,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AG.3909.01A	8	118147506	120847084	99	0.5933	SMALL-GAIN	NONFOCAL	11	"COLEC10,DSCC1,ENPP2,EXT1,MAL2,MED30,NOV,SAMD12,SLC30A8,TAF2,TNFRSF11B"
TCGA.EI.6883	8	118294315	125578500	2580	0.6681	SMALL-GAIN	NONFOCAL	36	"ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,ENPP2,EXT1,FAM83A,FAM91A1,FBXO32,FER1L6,HAS2,KLHL38,MAL2,MED30,MRPL13,MTBP,MTSS1,NDUFB9,NOV,RNF139,SAMD12,SNTB1,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2"
TCGA.AA.3543	8	118347261	146211594	10229	0.5607	SMALL-GAIN	NONFOCAL	159	Too-Many
TCGA.AA.3509.01A	8	118552091	121382510	152	0.5139	SMALL-GAIN	NONFOCAL	12	"COL14A1,COLEC10,DEPTOR,DSCC1,ENPP2,EXT1,MAL2,MED30,NOV,SAMD12,TAF2,TNFRSF11B"
TCGA.AG.3726	8	118607366	130425528	4450	0.4035	SMALL-GAIN	NONFOCAL	43	"ANXA13,ATAD2,C8orf76,COL14A1,COLEC10,DEPTOR,DERL1,DSCC1,ENPP2,EXT1,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,HAS2,KIAA0196,KLHL38,MAL2,MRPL13,MTBP,MTSS1,MYC,NDUFB9,NOV,NSMCE2,POU5F1B,RNF139,SAMD12,SNTB1,SQLE,TAF2,TATDN1,TBC1D31,TMEM65,TNFRSF11B,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.F4.6460	8	118621749	146293413	10167	0.3826	SMALL-GAIN	NONFOCAL	159	Too-Many
TCGA.A6.2671	8	119054985	146293413	9991	0.4758	SMALL-GAIN	NONFOCAL	159	Too-Many
TCGA.AA.A01D.01A	8	120862571	146279416	899	0.5899	SMALL-GAIN	NONFOCAL	151	Too-Many
TCGA.AA.3509.01A	8	121551075	132962179	341	0.4487	SMALL-GAIN	NONFOCAL	35	"ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,DERL1,EFR3A,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HAS2,KIAA0196,KLHL38,MTSS1,MYC,NDUFB9,NSMCE2,POU5F1B,RNF139,SNTB1,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.5M.AAT4	8	121973967	146293413	8950	0.4508	SMALL-GAIN	NONFOCAL	145	Too-Many
TCGA.AA.3872	8	123046515	126779760	1353	0.5999	SMALL-GAIN	NONFOCAL	25	"ANXA13,ATAD2,C8orf76,DERL1,FAM83A,FAM91A1,FBXO32,FER1L6,KIAA0196,KLHL38,MTSS1,NDUFB9,NSMCE2,RNF139,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.AA.3975	8	123558249	132226650	3356	0.6184	SMALL-GAIN	NONFOCAL	32	"ADCY8,ANXA13,ASAP1,ATAD2,C8orf76,DERL1,FAM49B,FAM83A,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,KIAA0196,KLHL38,MTSS1,MYC,NDUFB9,NSMCE2,POU5F1B,RNF139,SQLE,TATDN1,TBC1D31,TMEM65,TRIB1,TRMT12,WDYHV1,ZHX1,ZHX1-C8orf76,ZHX2,ZNF572"
TCGA.A6.3808.01A	8	124346071	141828932	646	0.6406	SMALL-GAIN	NONFOCAL	46	"ADCY8,AGO2,ANXA13,ASAP1,ATAD2,CHRAC1,COL22A1,EFR3A,FAM135B,FAM49B,FAM84B,FAM91A1,FBXO32,FER1L6,GSDMC,HHLA1,KCNK9,KCNQ3,KHDRBS3,KIAA0196,KLHL38,LRRC6,MTSS1,MYC,NDRG1,NDUFB9,NSMCE2,OC90,PHF20L1,POU5F1B,PTK2,RNF139,SLA,SQLE,ST3GAL1,TATDN1,TG,TMEM65,TMEM71,TRAPPC9,TRIB1,TRMT12,WDYHV1,WISP1,ZFAT,ZNF572"
TCGA.QG.A5YX	8	124488120	146293413	8052	0.4826	SMALL-GAIN	NONFOCAL	135	Too-Many
TCGA.AA.A02H.01A	8	124525411	146279416	770	0.3807	SMALL-GAIN	NONFOCAL	135	Too-Many
TCGA.AA.A00D.01A	8	124696803	134237586	306	0.5614	SMALL-GAIN	NONFOCAL	31	"ADCY8,ANXA13,ASAP1,EFR3A,FAM49B,FAM84B,FAM91A1,FER1L6,GSDMC,HHLA1,KCNQ3,KIAA0196,LRRC6,MTSS1,MYC,NDUFB9,NSMCE2,OC90,PHF20L1,POU5F1B,RNF139,SLA,SQLE,TATDN1,TG,TMEM65,TMEM71,TRIB1,TRMT12,WISP1,ZNF572"
TCGA.G4.6311	8	125186276	130383027	2058	0.5522	SMALL-GAIN	NONFOCAL	14	"FAM84B,KIAA0196,MTSS1,MYC,NDUFB9,NSMCE2,POU5F1B,RNF139,SQLE,TATDN1,TMEM65,TRIB1,TRMT12,ZNF572"
TCGA.AH.6549.01A	8	125531024	129061341	79	0.5058	SMALL-GAIN	NONFOCAL	11	"FAM84B,KIAA0196,MTSS1,MYC,NDUFB9,NSMCE2,POU5F1B,SQLE,TATDN1,TRIB1,ZNF572"
TCGA.F5.6702	8	125763883	146293413	7561	0.3994	SMALL-GAIN	NONFOCAL	124	Too-Many
TCGA.EI.6883	8	126024051	132157796	2405	0.6619	SMALL-GAIN	NONFOCAL	11	"ADCY8,ASAP1,FAM49B,FAM84B,GSDMC,KIAA0196,MYC,NSMCE2,POU5F1B,SQLE,TRIB1"
TCGA.DY.A1DC	8	128076214	146263180	6688	0.6501	SMALL-GAIN	NONFOCAL	117	Too-Many
TCGA.AD.6899	8	128939863	146293413	6335	0.4045	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.AG.3902	8	129464631	146293413	6053	0.4621	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.AZ.5403	8	129532669	146293413	6013	0.3874	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.AA.3870	8	129778605	138486698	3610	0.4782	SMALL-GAIN	NONFOCAL	18	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC,HHLA1,KCNQ3,KHDRBS3,LRRC6,NDRG1,OC90,PHF20L1,SLA,ST3GAL1,TG,TMEM71,WISP1,ZFAT"
TCGA.AZ.6598	8	129982755	146293413	5883	0.4639	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.G4.6311	8	130708332	146293413	5618	0.3926	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.AA.3496	8	131387247	135792557	2064	0.4688	SMALL-GAIN	NONFOCAL	15	"ADCY8,ASAP1,EFR3A,HHLA1,KCNQ3,LRRC6,NDRG1,OC90,PHF20L1,SLA,ST3GAL1,TG,TMEM71,WISP1,ZFAT"
TCGA.AF.6672	8	131903133	146293413	5168	0.5351	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.AG.3726	8	132192872	134299926	925	0.3823	SMALL-GAIN	NONFOCAL	11	"EFR3A,HHLA1,KCNQ3,LRRC6,NDRG1,OC90,PHF20L1,SLA,TG,TMEM71,WISP1"
TCGA.AA.3975	8	132235415	146293413	5046	0.5975	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.EI.6883	8	132328315	146293413	5017	0.6497	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.AA.3526	8	132353734	146293413	5012	0.4033	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.AG.3727	8	133742976	144866094	4304	0.4449	SMALL-GAIN	NONFOCAL	58	"ADGRB1,AGO2,ARC,C8orf31,CCDC166,CHRAC1,COL22A1,CYP11B1,CYP11B2,DENND3,EEF1D,FAM135B,FAM83H,GLI4,GML,GPIHBP1,GPR20,GSDMD,JRK,KCNK9,KHDRBS3,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAFA,MAPK15,MROH5,MROH6,NAPRT,NDRG1,PHF20L1,PSCA,PTK2,PTP4A3,PYCRL,RHPN1,SLA,SLC45A4,SLURP1,ST3GAL1,TG,THEM6,TIGD5,TMEM71,TOP1MT,TRAPPC9,TSNARE1,TSTA3,WISP1,ZC3H3,ZFAT,ZFP41,ZNF623,ZNF696,ZNF707"
TCGA.AA.A010.01A	8	133857979	141468348	219	0.5173	SMALL-GAIN	NONFOCAL	12	"COL22A1,FAM135B,KCNK9,KHDRBS3,NDRG1,PHF20L1,SLA,ST3GAL1,TG,TRAPPC9,WISP1,ZFAT"
TCGA.AA.A00D.01A	8	134296427	145772464	398	0.6754	SMALL-GAIN	NONFOCAL	93	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CHRAC1,COL22A1,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KHDRBS3,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NDRG1,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,ST3GAL1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFAT,ZFP41,ZNF623,ZNF696,ZNF707"
TCGA.AA.3872	8	137149271	143691837	2493	0.5279	SMALL-GAIN	NONFOCAL	14	"ADGRB1,AGO2,CHRAC1,COL22A1,DENND3,FAM135B,GPR20,KCNK9,MROH5,PTK2,PTP4A3,SLC45A4,TRAPPC9,TSNARE1"
TCGA.DM.A28F	8	137837285	146293413	2593	0.5942	SMALL-GAIN	NONFOCAL	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AF.2690	8	137862434	144777466	2432	0.5581	SMALL-GAIN	NONFOCAL	46	"ADGRB1,AGO2,ARC,C8orf31,CHRAC1,COL22A1,CYP11B1,CYP11B2,DENND3,EEF1D,FAM135B,GLI4,GML,GPIHBP1,GPR20,GSDMD,JRK,KCNK9,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAFA,MROH5,MROH6,NAPRT,PSCA,PTK2,PTP4A3,PYCRL,RHPN1,SLC45A4,SLURP1,THEM6,TIGD5,TOP1MT,TRAPPC9,TSNARE1,TSTA3,ZC3H3,ZFP41,ZNF623,ZNF696,ZNF707"
TCGA.AF.3913	8	138310697	143188361	1982	0.4122	SMALL-GAIN	NONFOCAL	12	"AGO2,CHRAC1,COL22A1,DENND3,FAM135B,GPR20,KCNK9,MROH5,PTK2,PTP4A3,SLC45A4,TRAPPC9"
TCGA.DM.A1D0	8	138922703	146293413	2091	0.4628	SMALL-GAIN	NONFOCAL	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.DM.A28H	8	139198604	142574961	1349	0.6468	SMALL-GAIN	NONFOCAL	12	"AGO2,CHRAC1,COL22A1,DENND3,FAM135B,GPR20,KCNK9,MROH5,PTK2,PTP4A3,SLC45A4,TRAPPC9"
TCGA.AA.3850	8	140603501	146199113	1198	0.39535	SMALL-GAIN	NONFOCAL	95	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3811	8	140613956	144457327	1001	0.5438	SMALL-GAIN	NONFOCAL	33	"ADGRB1,AGO2,ARC,C8orf31,CHRAC1,CYP11B1,CYP11B2,DENND3,GLI4,GML,GPIHBP1,GPR20,JRK,KCNK9,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MROH5,PSCA,PTK2,PTP4A3,RHPN1,SLC45A4,SLURP1,THEM6,TOP1MT,TRAPPC9,TSNARE1,ZFP41,ZNF696"
TCGA.AA.A01Z	8	141288768	146293413	935	0.4865	SMALL-GAIN	NONFOCAL	95	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.3726	8	141838359	145921004	771	0.4595	SMALL-GAIN	NONFOCAL	83	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF623,ZNF696,ZNF707"
TCGA.AM.5820	8	142041699	144573454	616	0.5747	SMALL-GAIN	NONFOCAL	30	"ADGRB1,ARC,C8orf31,CYP11B1,CYP11B2,DENND3,GLI4,GML,GPIHBP1,GPR20,JRK,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAFA,MROH5,PSCA,PTP4A3,RHPN1,SLC45A4,SLURP1,THEM6,TOP1MT,TSNARE1,ZC3H3,ZFP41,ZNF696"
TCGA.AZ.4684.01A	8	142151270	146279416	539	0.6088	SMALL-GAIN	NONFOCAL	91	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.A016.01A	8	142231646	143998979	64	0.5994	SMALL-GAIN	NONFOCAL	18	"ADGRB1,ARC,CYP11B1,CYP11B2,GML,GPR20,JRK,LY6D,LY6K,LYNX1,LYPD2,MROH5,PSCA,PTP4A3,SLC45A4,SLURP1,THEM6,TSNARE1"
TCGA.AG.A01Y	8	142290285	146293413	722	0.651	SMALL-GAIN	NONFOCAL	89	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.DM.A28H	8	142577072	146293413	633	0.6733	SMALL-GAIN	NONFOCAL	86	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.A01W.01A	8	143853556	144463567	40	0.6297	SMALL-GAIN	NONFOCAL	14	"C8orf31,CYP11B1,CYP11B2,GLI4,GML,GPIHBP1,LY6D,LY6E,LY6H,LYNX1,RHPN1,TOP1MT,ZFP41,ZNF696"
TCGA.AA.3872	8	143946428	146203411	276	0.6267	SMALL-GAIN	NONFOCAL	73	"ADCK5,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,LY6E,LY6H,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TOP1MT,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.A01F.01A	8	144102286	146279416	198	0.4067	SMALL-GAIN	NONFOCAL	72	"ADCK5,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,LY6E,LY6H,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TOP1MT,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.3819	8	144448392	146293413	205	0.4877	SMALL-GAIN	NONFOCAL	64	"ADCK5,ARHGAP39,BOP1,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GPAA1,GPT,GRINA,GSDMD,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TIGD5,TMEM249,TONSL,TSTA3,VPS28,ZC3H3,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF7,ZNF707"
TCGA.AA.A02W.01A	8	145151896	146066758	76	0.5584	SMALL-GAIN	NONFOCAL	34	"ADCK5,ARHGAP39,BOP1,C8orf82,CPSF1,CYC1,CYHR1,DGAT1,FBXL6,FOXH1,GPT,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MFSD3,MROH1,PPP1R16A,RECQL4,RPL8,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,TMEM249,TONSL,VPS28,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.A01W.01A	8	145264731	145623038	50	0.4705	SMALL-GAIN	NONFOCAL	12	"ADCK5,BOP1,CPSF1,DGAT1,FBXL6,HGH1,HSF1,MROH1,SCRT1,SCX,SLC52A2,TMEM249"
TCGA.AG.3891.01A	8	145582912	145736382	48	0.4302	SMALL-GAIN	NONFOCAL	12	"ADCK5,CPSF1,CYHR1,FOXH1,GPT,KIFC2,MFSD3,PPP1R16A,SLC39A4,SLC52A2,TONSL,VPS28"
TCGA.AG.4021	8	145653005	146293413	98	0.6266	SMALL-GAIN	NONFOCAL	22	"ARHGAP39,C8orf33,C8orf82,COMMD5,CYHR1,FOXH1,GPT,KIFC2,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,RPL8,TONSL,VPS28,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.3811	8	145710985	146293413	86	0.4418	SMALL-GAIN	NONFOCAL	17	"ARHGAP39,C8orf33,C8orf82,COMMD5,GPT,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.3727	8	145710985	146293413	87	0.5347	SMALL-GAIN	NONFOCAL	17	"ARHGAP39,C8orf33,C8orf82,COMMD5,GPT,LRRC14,LRRC24,MFSD3,PPP1R16A,RECQL4,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AG.A01W.01A	9	4770	33270757	1102	0.639	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.AG.A02X.01A	9	116866	6254411	317	0.5922	SMALL-GAIN	NONFOCAL	34	"AK3,C9orf66,CBWD1,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AA.3967.01A	9	116866	12698432	427	0.58	SMALL-GAIN	NONFOCAL	41	"AK3,C9orf66,CBWD1,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOXD4,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,TYRP1,UHRF2,VLDLR"
TCGA.AG.A023.01A	9	116866	35546532	1326	0.5104	SMALL-GAIN	NONFOCAL	153	Too-Many
TCGA.AA.3980.01A	9	116866	130474441	5321	0.3864	SMALL-GAIN	NONFOCAL	545	Too-Many
TCGA.AD.A5EK	9	192128	4746362	2980	0.501	SMALL-GAIN	NONFOCAL	17	"AK3,C9orf66,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,GLIS3,KANK1,KCNV2,KIAA0020,PPAPDC2,RFX3,SLC1A1,SMARCA2,SPATA6L,VLDLR"
TCGA.AG.3598	9	192128	11988658	6400	0.5781	SMALL-GAIN	NONFOCAL	38	"AK3,C9orf66,CD274,CDC37L1,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SPATA6L,TMEM261,TPD52L3,UHRF2,VLDLR"
TCGA.G4.6626	9	192128	17185336	8790	0.489	SMALL-GAIN	NONFOCAL	52	"AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AD.6901	9	192128	23543625	11401	0.4829	SMALL-GAIN	NONFOCAL	86	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AF.3913	9	192128	24934490	11846	0.6224	SMALL-GAIN	NONFOCAL	88	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3673	9	192128	35994553	15744	0.4091	SMALL-GAIN	NONFOCAL	172	Too-Many
TCGA.AA.A022	9	192128	37031875	16078	0.6761	SMALL-GAIN	NONFOCAL	180	Too-Many
TCGA.AG.4015	9	192128	38771830	16676	0.5575	SMALL-GAIN	NONFOCAL	195	Too-Many
TCGA.NH.A8F8	9	192128	38771830	16708	0.4162	SMALL-GAIN	NONFOCAL	195	Too-Many
TCGA.CM.6163	9	192128	38994129	16649	0.556	SMALL-GAIN	NONFOCAL	195	Too-Many
TCGA.AA.3854	9	192128	39184064	16722	0.5307	SMALL-GAIN	NONFOCAL	196	Too-Many
TCGA.AG.3726	9	192128	39184064	16717	0.396	SMALL-GAIN	NONFOCAL	196	Too-Many
TCGA.AZ.6603	9	192128	39184064	16664	0.3926	SMALL-GAIN	NONFOCAL	196	Too-Many
TCGA.D5.5539	9	192128	39184064	16692	0.5108	SMALL-GAIN	NONFOCAL	196	Too-Many
TCGA.A6.6782	9	192128	44795318	16636	0.4538	SMALL-GAIN	NONFOCAL	206	Too-Many
TCGA.SS.A7HO	9	192128	69827538	16717	0.5835	SMALL-GAIN	NONFOCAL	211	Too-Many
TCGA.QG.A5YV	9	192128	70987820	16609	0.5682	SMALL-GAIN	NONFOCAL	215	Too-Many
TCGA.DM.A1DA	9	192128	100158051	26877	0.4137	SMALL-GAIN	NONFOCAL	342	Too-Many
TCGA.EI.6883	9	192128	127069628	37097	0.3807	SMALL-GAIN	NONFOCAL	514	Too-Many
TCGA.AA.3534	9	192128	141071474	40593	0.458	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.AA.3544	9	192128	141071474	40621	0.418	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.AA.3558	9	192128	141071474	40605	0.4941	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.AA.3660	9	192128	141071474	40598	0.3891	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.AA.3663	9	192128	141071474	40524	0.3994	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.AA.3994	9	192128	141071474	40558	0.384	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.AG.3725	9	192128	141071474	40540	0.5168	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.AG.A020	9	192128	141071474	40555	0.5228	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.CA.5796	9	192128	141071474	40530	0.4636	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.DM.A285	9	192128	141071474	40515	0.4459	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.DM.A28K	9	192128	141071474	40505	0.488	SMALL-GAIN	NONFOCAL	751	Too-Many
TCGA.F4.6570	9	217396	17250915	8801	0.4084	SMALL-GAIN	NONFOCAL	51	"AK3,BNC2,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AF.2690	9	1603022	38771830	15701	0.4111	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.A6.3808.01A	9	2060774	17235609	562	0.5655	SMALL-GAIN	NONFOCAL	46	"AK3,BNC2,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,ERMP1,FREM1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AD.A5EK	9	4772327	37210263	13065	0.5038	SMALL-GAIN	NONFOCAL	164	Too-Many
TCGA.AA.3509.01A	9	5029735	6330940	105	0.4274	SMALL-GAIN	NONFOCAL	15	"CD274,ERMP1,IL33,INSL4,INSL6,JAK2,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,RLN2,TPD52L3"
TCGA.AZ.4684.01A	9	5029735	6330940	105	0.565	SMALL-GAIN	NONFOCAL	15	"CD274,ERMP1,IL33,INSL4,INSL6,JAK2,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,RLN2,TPD52L3"
TCGA.CK.5914.01A	9	5163992	6610172	125	0.4204	SMALL-GAIN	NONFOCAL	16	"CD274,ERMP1,GLDC,IL33,INSL4,INSL6,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,RLN2,TPD52L3,UHRF2"
TCGA.AA.A01C.01A	9	5431860	6610172	112	0.388	SMALL-GAIN	NONFOCAL	12	"CD274,ERMP1,GLDC,IL33,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,TPD52L3,UHRF2"
TCGA.AZ.4684.01A	9	6814579	17143234	257	0.3839	SMALL-GAIN	NONFOCAL	17	"BNC2,C9orf92,CCDC171,CER1,CNTLN,FREM1,KDM4C,LURAP1L,MPDZ,NFIB,PSIP1,PTPRD,SNAPC3,TMEM261,TTC39B,TYRP1,ZDHHC21"
TCGA.NH.A6GC	9	7541472	141071474	36321	0.6323	SMALL-GAIN	NONFOCAL	715	Too-Many
TCGA.A6.2671	9	7990650	18292828	4832	0.5597	SMALL-GAIN	NONFOCAL	16	"BNC2,C9orf92,CCDC171,CER1,CNTLN,FREM1,LURAP1L,MPDZ,NFIB,PSIP1,PTPRD,SH3GL2,SNAPC3,TTC39B,TYRP1,ZDHHC21"
TCGA.AG.3598	9	11996758	141071474	34102	0.5939	SMALL-GAIN	NONFOCAL	713	Too-Many
TCGA.AA.3967.01A	9	13223522	70862489	1252	0.6226	SMALL-GAIN	NONFOCAL	173	Too-Many
TCGA.G4.6626	9	17309885	38771830	7893	0.4869	SMALL-GAIN	NONFOCAL	144	Too-Many
TCGA.AA.3509.01A	9	19450439	24544141	126	0.478	SMALL-GAIN	NONFOCAL	28	"ACER2,CDKN2A,CDKN2B,DMRTA1,ELAVL2,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IZUMO3,KLHL9,MLLT3,MTAP,SLC24A2"
TCGA.AZ.4684.01A	9	19619545	24543609	117	0.5862	SMALL-GAIN	NONFOCAL	27	"CDKN2A,CDKN2B,DMRTA1,ELAVL2,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IZUMO3,KLHL9,MLLT3,MTAP,SLC24A2"
TCGA.AG.3594	9	20333292	22801569	833	0.5544	SMALL-GAIN	NONFOCAL	24	"CDKN2A,CDKN2B,DMRTA1,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MLLT3,MTAP"
TCGA.DM.A28M.01A	9	20781689	21304755	58	0.5671	SMALL-GAIN	NONFOCAL	12	"FOCAD,HACD4,IFNA10,IFNA14,IFNA16,IFNA17,IFNA21,IFNA4,IFNA5,IFNA7,IFNB1,IFNW1"
TCGA.DM.A28F	9	20928308	22861226	657	0.3905	SMALL-GAIN	NONFOCAL	23	"CDKN2A,CDKN2B,DMRTA1,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MTAP"
TCGA.AA.A01C.01A	9	20986273	21861908	43	0.5867	SMALL-GAIN	NONFOCAL	20	"FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MTAP"
TCGA.A6.3808.01A	9	21481036	26923129	48	0.6428	SMALL-GAIN	NONFOCAL	11	"CAAP1,CDKN2A,CDKN2B,DMRTA1,ELAVL2,IFNE,IZUMO3,LOC100506422,MTAP,PLAA,TUSC1"
TCGA.F4.6704	9	22934248	34919679	4270	0.597	SMALL-GAIN	NONFOCAL	55	"ACO1,ANKRD18B,APTX,AQP3,AQP7,ARID3C,B4GALT1,BAG1,C9orf24,C9orf72,CAAP1,CCL19,CCL21,CCL27,CHMP5,CNTFR,DCAF12,DCTN3,DDX58,DNAI1,DNAJA1,ELAVL2,ENHO,EQTN,FAM205A,FAM219A,GALT,IFNK,IFT74,IL11RA,IZUMO3,KIAA1161,KIF24,LINGO2,LOC100506422,LRRC19,MOB3B,NDUFB6,NFX1,NOL6,NUDT2,PLAA,PRSS3,RPP25L,SIGMAR1,SMU1,SPINK4,TAF1L,TEK,TMEM215,TOPORS,TUSC1,UBAP1,UBAP2,UBE2R2"
TCGA.AD.6901	9	24283657	39184064	5025	0.4003	SMALL-GAIN	NONFOCAL	109	Too-Many
TCGA.AF.3913	9	24971616	83474641	9418	0.5554	SMALL-GAIN	NONFOCAL	167	Too-Many
TCGA.AG.3594	9	25934931	141071474	28375	0.4101	SMALL-GAIN	NONFOCAL	662	Too-Many
TCGA.AA.A010.01A	9	27948817	33536829	167	0.4024	SMALL-GAIN	NONFOCAL	19	"ACO1,ANKRD18B,APTX,AQP3,AQP7,B4GALT1,BAG1,CHMP5,DDX58,DNAJA1,LINGO2,NDUFB6,NFX1,NOL6,SMU1,SPINK4,TAF1L,TMEM215,TOPORS"
TCGA.AA.3532	9	30976629	33929684	1030	0.5272	SMALL-GAIN	NONFOCAL	21	"ACO1,ANKRD18B,APTX,AQP3,AQP7,B4GALT1,BAG1,CHMP5,DDX58,DNAJA1,NDUFB6,NFX1,NOL6,PRSS3,SMU1,SPINK4,TAF1L,TMEM215,TOPORS,UBAP2,UBE2R2"
TCGA.AA.3844	9	32333629	71883223	2413	0.5465	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.AU.3779	9	33343396	37934139	1233	0.5192	SMALL-GAIN	NONFOCAL	79	"ANKRD18B,AQP3,AQP7,ARHGEF39,ARID3C,C9orf131,C9orf24,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CLTA,CNTFR,CREB3,DCAF10,DCAF12,DCTN3,DNAI1,DNAJB5,ENHO,EXOSC3,FAM166B,FAM205A,FAM214B,FAM219A,FAM221B,FANCG,FBXO10,FRMPD1,GALT,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IL11RA,KIAA1045,KIAA1161,KIF24,MELK,MSMP,NFX1,NOL6,NPR2,NUDT2,OR13J1,OR2S2,PAX5,PIGO,POLR1E,PRSS3,RECK,RGP1,RNF38,RPP25L,RUSC2,SHB,SIGMAR1,SIT1,SLC25A51,SPAG8,STOML2,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,UBAP1,UBAP2,UBE2R2,UNC13B,VCP,ZBTB5,ZCCHC7"
TCGA.AG.A01W.01A	9	34210832	35597871	228	0.5142	SMALL-GAIN	NONFOCAL	30	"ARID3C,C9orf131,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCTN3,DNAI1,DNAJB5,ENHO,FAM166B,FAM205A,FAM214B,FAM219A,FANCG,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,NUDT2,PIGO,RPP25L,RUSC2,SIGMAR1,STOML2,UBAP1,UNC13B,VCP"
TCGA.G4.6299	9	35473736	39182451	1111	0.6257	SMALL-GAIN	NONFOCAL	46	"ALDH1B1,ANKRD18A,ARHGEF39,CA9,CCDC107,CCIN,CD72,CLTA,CNTNAP3,CREB3,DCAF10,EXOSC3,FAM166B,FAM221B,FBXO10,FRMPD1,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,POLR1E,RECK,RGP1,RNF38,RUSC2,SHB,SIT1,SLC25A51,SPAG8,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,ZBTB5,ZCCHC7"
TCGA.AG.A01W.01A	9	35785460	37477819	146	0.443	SMALL-GAIN	NONFOCAL	19	"CCIN,CLTA,FAM221B,GLIPR2,GNE,GRHPR,HINT2,HRCT1,MELK,NPR2,OR13J1,OR2S2,PAX5,RECK,RNF38,SPAG8,TMEM8B,ZBTB5,ZCCHC7"
TCGA.AA.3673	9	35999997	141071474	24884	0.4344	SMALL-GAIN	NONFOCAL	579	Too-Many
TCGA.F4.6704	9	36088376	69827538	956	0.6132	SMALL-GAIN	NONFOCAL	39	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD5,CBWD6,CCIN,CLTA,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FBXO10,FOXD4L4,FOXD4L6,FRMPD1,GLIPR2,GNE,GRHPR,IGFBPL1,MELK,PAX5,POLR1E,RECK,RNF38,SHB,SLC25A51,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TOMM5,TRMT10B,ZBTB5,ZCCHC7,ZNF658"
TCGA.AA.A022	9	37037975	141071474	24451	0.6072	SMALL-GAIN	NONFOCAL	571	Too-Many
TCGA.AD.A5EK	9	37439044	114563068	16041	0.481	SMALL-GAIN	NONFOCAL	245	Too-Many
TCGA.CK.5914.01A	9	38571963	71555515	116	0.6575	SMALL-GAIN	NONFOCAL	24	"ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD3,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,FAM122A,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,PGM5,PIP5K1B,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TMEM252,ZNF658"
TCGA.AG.3726	9	44866027	72410322	590	0.4151	SMALL-GAIN	NONFOCAL	22	"ANKRD20A1,ANKRD20A3,ANKRD20A4,APBA1,CBWD3,CBWD5,CBWD6,FAM122A,FAM189A2,FOXD4L3,FOXD4L4,FOXD4L5,FOXD4L6,FXN,PGM5,PIP5K1B,PRKACG,PTAR1,SPATA31A5,SPATA31A7,TJP2,TMEM252"
TCGA.DM.A288	9	69824963	72526792	641	0.4302	SMALL-GAIN	NONFOCAL	16	"APBA1,C9orf135,CBWD3,CBWD5,FAM122A,FAM189A2,FOXD4L3,FOXD4L4,FOXD4L5,FXN,PGM5,PIP5K1B,PRKACG,PTAR1,TJP2,TMEM252"
TCGA.AA.A004.01A	9	70918906	141015884	4106	0.4152	SMALL-GAIN	NONFOCAL	538	Too-Many
TCGA.A6.3808.01A	9	70972017	86403488	630	0.4518	SMALL-GAIN	NONFOCAL	50	"ABHD17B,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf40,C9orf41,C9orf57,C9orf85,CEP78,FAM122A,FAM189A2,FOXB2,FRMD3,FXN,GCNT1,GDA,GKAP1,GNA14,GNAQ,IDNK,KLF9,MAMDC2,NMRK1,OSTF1,PCSK5,PGM5,PIP5K1B,PRKACG,PRUNE2,PSAT1,PTAR1,RASEF,RFK,RORB,SMC5,SPATA31D1,SPATA31D3,SPATA31D4,TJP2,TLE1,TLE4,TMC1,TMEM2,TMEM252,TRPM3,TRPM6,UBQLN1,VPS13A,ZFAND5"
TCGA.DY.A1DF	9	71013799	141071474	23876	0.5818	SMALL-GAIN	NONFOCAL	537	Too-Many
TCGA.DM.A28A	9	71712865	74882571	1155	0.584	SMALL-GAIN	NONFOCAL	15	"ABHD17B,APBA1,C9orf135,C9orf57,C9orf85,FAM189A2,FXN,GDA,KLF9,MAMDC2,PTAR1,SMC5,TJP2,TMEM2,TRPM3"
TCGA.CK.5914.01A	9	71986363	74865602	156	0.5273	SMALL-GAIN	NONFOCAL	13	"ABHD17B,APBA1,C9orf135,C9orf57,C9orf85,FAM189A2,GDA,KLF9,MAMDC2,PTAR1,SMC5,TMEM2,TRPM3"
TCGA.AG.3726	9	72729569	86304964	4826	0.4094	SMALL-GAIN	NONFOCAL	38	"ABHD17B,ALDH1A1,ANXA1,C9orf40,C9orf41,C9orf57,C9orf85,CEP78,FOXB2,FRMD3,GCNT1,GDA,GNA14,GNAQ,IDNK,KLF9,MAMDC2,NMRK1,OSTF1,PCSK5,PRUNE2,PSAT1,RASEF,RFK,RORB,SMC5,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,TMC1,TMEM2,TRPM3,TRPM6,UBQLN1,VPS13A,ZFAND5"
TCGA.DM.A288	9	73544828	141071474	22804	0.4187	SMALL-GAIN	NONFOCAL	523	Too-Many
TCGA.DM.A28A	9	75046563	82794761	2746	0.5539	SMALL-GAIN	NONFOCAL	20	"ALDH1A1,ANXA1,C9orf40,C9orf41,CEP78,FOXB2,GCNT1,GNA14,GNAQ,NMRK1,OSTF1,PCSK5,PRUNE2,PSAT1,RFK,RORB,TLE4,TMC1,TRPM6,VPS13A"
TCGA.AA.A010.01A	9	79862135	86322378	194	0.3807	SMALL-GAIN	NONFOCAL	14	"CEP78,FRMD3,GNA14,GNAQ,IDNK,PSAT1,RASEF,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,TLE4,UBQLN1,VPS13A"
TCGA.DM.A28A	9	82997799	88117072	1877	0.5351	SMALL-GAIN	NONFOCAL	15	"C9orf64,FRMD3,GKAP1,HNRNPK,IDNK,KIF27,NTRK2,RASEF,RMI1,SLC28A3,SPATA31D1,SPATA31D3,SPATA31D4,TLE1,UBQLN1"
TCGA.AA.3844	9	85792652	89569763	1389	0.4229	SMALL-GAIN	NONFOCAL	17	"AGTPBP1,C9orf153,C9orf64,FRMD3,GAS1,GKAP1,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,NAA35,NTRK2,RMI1,SLC28A3,UBQLN1,ZCCHC6"
TCGA.A6.3808.01A	9	86591852	90316690	155	0.5391	SMALL-GAIN	NONFOCAL	13	"AGTPBP1,C9orf153,C9orf170,DAPK1,GAS1,GOLM1,HNRNPK,ISCA1,NAA35,NTRK2,RMI1,SLC28A3,ZCCHC6"
TCGA.AG.3742	9	88086684	117764087	10508	0.3999	SMALL-GAIN	NONFOCAL	193	Too-Many
TCGA.DM.A28A	9	89316028	92053123	1041	0.5075	SMALL-GAIN	NONFOCAL	17	"C9orf170,C9orf47,CDK20,CKS2,CTSL,DAPK1,GAS1,LOC286238,NXNL2,S1PR3,SECISBP2,SEMA4D,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.AA.3870	9	89684171	110168616	6855	0.3989	SMALL-GAIN	NONFOCAL	123	Too-Many
TCGA.AA.3844	9	89713414	104389251	4731	0.4983	SMALL-GAIN	NONFOCAL	103	Too-Many
TCGA.CK.5914.01A	9	90497797	91949420	61	0.4171	SMALL-GAIN	NONFOCAL	12	"C9orf47,CDK20,CKS2,LOC286238,NXNL2,S1PR3,SECISBP2,SHC3,SPATA31C1,SPATA31C2,SPATA31E1,SPIN1"
TCGA.DM.A28A	9	92457610	96104236	1223	0.5503	SMALL-GAIN	NONFOCAL	22	"ASPN,AUH,BICD2,C9orf129,C9orf89,CENPP,DIRAS2,ECM2,FGD3,IARS,IPPK,NFIL3,NINJ1,NOL8,OGN,OMD,ROR2,SPTLC1,SUSD3,SYK,WNK2,ZNF484"
TCGA.AA.3941	9	94058206	98668369	1338	0.4204	SMALL-GAIN	NONFOCAL	34	"ASPN,AUH,BARX1,BICD2,C9orf129,C9orf3,C9orf89,CENPP,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,HIATL1,IARS,IPPK,NFIL3,NINJ1,NOL8,NUTM2F,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,SPTLC1,SUSD3,WNK2,ZNF169,ZNF484"
TCGA.AA.A02K.01A	9	96080629	125582337	1869	0.4738	SMALL-GAIN	NONFOCAL	190	Too-Many
TCGA.AA.3549	9	98152241	100652581	724	0.4509	SMALL-GAIN	NONFOCAL	20	"AAED1,CCDC180,CDC14B,CTSV,ERCC6L2,FOXE1,HABP4,HSD17B3,LOC158434,NCBP1,NUTM2G,PTCH1,SLC35D2,TDRD7,TMOD1,TSTD2,XPA,ZNF367,ZNF510,ZNF782"
TCGA.AA.3941	9	98738798	102213748	1119	0.3956	SMALL-GAIN	NONFOCAL	33	"AAED1,ALG2,ANKS6,ANP32B,C9orf156,CCDC180,CDC14B,COL15A1,CORO2A,CTSV,ERCC6L2,FOXE1,GABBR2,GALNT12,HABP4,HEMGN,HSD17B3,LOC158434,NANS,NCBP1,NUTM2G,SEC61B,SLC35D2,TBC1D2,TDRD7,TGFBR1,TMOD1,TRIM14,TSTD2,XPA,ZNF367,ZNF510,ZNF782"
TCGA.DM.A1DA	9	100162416	141071474	13721	0.4152	SMALL-GAIN	NONFOCAL	409	Too-Many
TCGA.AZ.4684.01A	9	102713330	107535048	163	0.5205	SMALL-GAIN	NONFOCAL	29	"ALDOB,BAAT,CYLC2,ERP44,GRIN3A,INVS,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PPP3R2,RNF20,SMC2,STX17,TEX10,TMEFF1,TMEM246,ZNF189"
TCGA.CK.5914.01A	9	102991890	105766929	104	0.5453	SMALL-GAIN	NONFOCAL	16	"ALDOB,BAAT,CYLC2,GRIN3A,INVS,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,PPP3R2,RNF20,TEX10,TMEFF1,TMEM246,ZNF189"
TCGA.AA.A010.01A	9	103271240	107535048	113	0.5599	SMALL-GAIN	NONFOCAL	24	"ALDOB,BAAT,CYLC2,GRIN3A,LPPR1,MRPL50,MSANTD3-TMEFF1,MURC,NIPSNAP3A,NIPSNAP3B,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PPP3R2,RNF20,SMC2,TMEFF1,TMEM246,ZNF189"
TCGA.CK.5914.01A	9	112003905	114089726	134	0.4272	SMALL-GAIN	NONFOCAL	11	"AKAP2,C9orf152,EPB41L4B,LPAR1,MUSK,PALM2,PALM2-AKAP2,PTPN3,SVEP1,TXN,TXNDC8"
TCGA.AA.3844	9	112524826	114462321	825	0.3864	SMALL-GAIN	NONFOCAL	17	"AKAP2,C9orf152,C9orf84,DNAJC25,DNAJC25-GNG10,GNG10,KIAA0368,LPAR1,MUSK,OR2K2,PALM2,PALM2-AKAP2,PTGR1,SVEP1,TXN,TXNDC8,ZNF483"
TCGA.AD.A5EK	9	114572010	141071474	8208	0.4507	SMALL-GAIN	NONFOCAL	324	Too-Many
TCGA.DM.A28A	9	115682715	120978386	2318	0.5091	SMALL-GAIN	NONFOCAL	34	"AKNA,ALAD,AMBP,ASTN2,ATP6V1G1,BSPRY,C9orf43,C9orf91,CDC26,COL27A1,DEC1,DFNB31,FKBP15,HDHD3,KIF12,LOC100505478,ORM1,ORM2,PAPPA,POLE3,PRPF4,RGS3,RNF183,SLC31A1,SLC31A2,TLR4,TNC,TNFSF15,TNFSF8,TRIM32,WDR31,ZFP37,ZNF618,ZNF883"
TCGA.AA.3850	9	115859222	116489193	223	0.42085	SMALL-GAIN	NONFOCAL	13	"ALAD,BSPRY,C9orf43,CDC26,FKBP15,HDHD3,POLE3,PRPF4,RGS3,RNF183,SLC31A1,SLC31A2,WDR31"
TCGA.AA.3941	9	115946499	116488823	176	0.5102	SMALL-GAIN	NONFOCAL	12	"ALAD,BSPRY,C9orf43,CDC26,FKBP15,HDHD3,POLE3,PRPF4,RGS3,RNF183,SLC31A1,WDR31"
TCGA.AA.3844	9	116548429	117898908	626	0.5796	SMALL-GAIN	NONFOCAL	14	"AKNA,AMBP,ATP6V1G1,C9orf91,COL27A1,DFNB31,KIF12,LOC100505478,ORM1,ORM2,TNC,TNFSF15,TNFSF8,ZNF618"
TCGA.AA.3941	9	116664096	117504284	415	0.4756	SMALL-GAIN	NONFOCAL	11	"AKNA,AMBP,ATP6V1G1,C9orf91,COL27A1,DFNB31,KIF12,LOC100505478,ORM1,ORM2,ZNF618"
TCGA.AA.3850	9	116698629	117476622	395	0.38605	SMALL-GAIN	NONFOCAL	11	"AKNA,AMBP,ATP6V1G1,C9orf91,COL27A1,DFNB31,KIF12,LOC100505478,ORM1,ORM2,ZNF618"
TCGA.AG.3742	9	117832415	141071474	6952	0.4092	SMALL-GAIN	NONFOCAL	288	Too-Many
TCGA.AA.3952	9	118694534	141071474	6632	0.4165	SMALL-GAIN	NONFOCAL	286	Too-Many
TCGA.AA.3844	9	122696634	128250408	1572	0.5314	SMALL-GAIN	NONFOCAL	58	"ARPC5L,C5,CDK5RAP2,CNTRL,CRB2,DAB2IP,DENND1A,FBXW2,GAPVD1,GOLGA1,GPR21,GSN,HSPA5,LHX2,LHX6,MAPKAP1,MEGF9,MORN5,MRRF,NDUFA8,NEK6,NR5A1,NR6A1,OLFML2A,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PHF19,PPP6C,PSMB7,PSMD5,PTGS1,RAB14,RABEPK,RABGAP1,RBM18,RC3H2,RPL35,SCAI,STOM,STRBP,TRAF1,TTLL11,WDR38,ZBTB26,ZBTB6"
TCGA.AA.3941	9	123105973	141071474	4592	0.4879	SMALL-GAIN	NONFOCAL	281	Too-Many
TCGA.A6.3808.01A	9	123939351	125588845	116	0.4479	SMALL-GAIN	NONFOCAL	27	"CNTRL,DAB2IP,GSN,LHX6,MORN5,MRRF,NDUFA8,OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL,PTGS1,RAB14,RBM18,STOM,TTLL11"
TCGA.AG.3909.01A	9	125239270	125588845	18	0.6075	SMALL-GAIN	NONFOCAL	15	"OR1B1,OR1J1,OR1J2,OR1J4,OR1K1,OR1L1,OR1L3,OR1L4,OR1L6,OR1L8,OR1N1,OR1N2,OR1Q1,OR5C1,PDCL"
TCGA.EI.7004	9	126763127	141071474	3552	0.4116	SMALL-GAIN	NONFOCAL	239	Too-Many
TCGA.EI.6883	9	127119277	141071474	3422	0.4041	SMALL-GAIN	NONFOCAL	237	Too-Many
TCGA.AA.A02K.01A	9	127231455	129739913	177	0.562	SMALL-GAIN	NONFOCAL	19	"ARPC5L,GAPVD1,GOLGA1,HSPA5,LMX1B,MAPKAP1,MVB12B,NR5A1,NR6A1,OLFML2A,PBX3,PPP6C,RABEPK,RALGPS1,RPL35,SCAI,WDR38,ZBTB34,ZBTB43"
TCGA.AA.3844	9	128695179	135523006	1791	0.6656	SMALL-GAIN	NONFOCAL	101	Too-Many
TCGA.AA.3850	9	128732274	141071474	3115	0.40895	SMALL-GAIN	NONFOCAL	222	Too-Many
TCGA.DM.A1HA	9	133393073	141003945	1965	0.4704	SMALL-GAIN	NONFOCAL	144	Too-Many
TCGA.AA.3844	9	135531169	138878883	1049	0.6773	SMALL-GAIN	NONFOCAL	49	"ABO,ADAMTS13,ADAMTSL2,AK8,BRD3,C9orf116,C9orf62,C9orf9,CACFD1,CAMSAP1,CEL,COL5A1,DBH,DDX31,FAM163B,FCN1,FCN2,GBGT1,GFI1B,GLT6D1,GTF3C4,GTF3C5,KCNT1,LCN1,LCN9,MED22,MRPS2,OBP2A,OBP2B,OLFM1,PAEP,PPP1R26,RALGDS,REXO4,RPL7A,RXRA,SARDH,SLC2A6,SOHLH1,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,TSC1,UBAC1,VAV2,WDR5"
TCGA.AM.5820	9	136198588	136929045	224	0.602	SMALL-GAIN	NONFOCAL	18	"ADAMTS13,ADAMTSL2,BRD3,CACFD1,DBH,FAM163B,MED22,REXO4,RPL7A,SARDH,SLC2A6,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,VAV2"
TCGA.AG.A00C.01A	9	137989538	139301565	105	0.4884	SMALL-GAIN	NONFOCAL	23	"C9orf116,C9orf62,C9orf69,CAMSAP1,CARD9,DNLZ,GLT6D1,GPSM1,KCNT1,LCN1,LCN9,LHX3,MRPS2,NACC2,OBP2A,OLFM1,PAEP,PPP1R26,QSOX2,SDCCAG3,SNAPC4,SOHLH1,UBAC1"
TCGA.AY.6196	9	138013708	141071474	546	0.573	SMALL-GAIN	NONFOCAL	87	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.AG.A01W.01A	9	138408464	139440462	302	0.3968	SMALL-GAIN	NONFOCAL	23	"C9orf163,C9orf69,CAMSAP1,CARD9,DNLZ,GLT6D1,GPSM1,INPP5E,KCNT1,LCN1,LCN9,LHX3,NACC2,NOTCH1,OBP2A,PAEP,PMPCA,QSOX2,SDCCAG3,SEC16A,SNAPC4,SOHLH1,UBAC1"
TCGA.AG.A008.01A	9	138845461	139362815	73	0.4571	SMALL-GAIN	NONFOCAL	13	"C9orf69,CARD9,DNLZ,GPSM1,INPP5E,LHX3,NACC2,PMPCA,QSOX2,SDCCAG3,SEC16A,SNAPC4,UBAC1"
TCGA.AG.A00C.01A	9	139368469	141015884	232	0.3927	SMALL-GAIN	NONFOCAL	63	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,CACNA1B,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SEC16A,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AG.A01L.01A	9	139925125	140075192	26	0.3982	SMALL-GAIN	NONFOCAL	12	"ANAPC2,C9orf139,DPP7,ENTPD2,FUT7,GRIN1,LRRC26,MAN1B1,NPDC1,SAPCD2,TMEM210,UAP1L1"
TCGA.AG.3906.01A	9	139944687	140086594	28	0.5257	SMALL-GAIN	NONFOCAL	11	"ANAPC2,DPP7,ENTPD2,GRIN1,LRRC26,MAN1B1,SAPCD2,SSNA1,TMEM210,TPRN,UAP1L1"
TCGA.AG.A014.01A	10	93180	78649157	3256	0.449	SMALL-GAIN	NONFOCAL	344	Too-Many
TCGA.AA.3872	10	135655	9085339	4535	0.5255	SMALL-GAIN	NONFOCAL	38	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.A6.2686	10	135655	30147027	13046	0.4942	SMALL-GAIN	NONFOCAL	130	Too-Many
TCGA.AA.3548	10	135655	38968283	15830	0.3976	SMALL-GAIN	NONFOCAL	154	Too-Many
TCGA.AY.4070	10	135655	42523460	15776	0.5016	SMALL-GAIN	NONFOCAL	154	Too-Many
TCGA.DM.A1DA	10	135655	135434550	47261	0.3806	SMALL-GAIN	NONFOCAL	715	Too-Many
TCGA.AA.3845	10	159075	9791542	4780	0.4021	SMALL-GAIN	NONFOCAL	38	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,DIP2C,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3,WDR37,ZMYND11"
TCGA.CM.5862	10	1857186	19912249	8632	0.619	SMALL-GAIN	NONFOCAL	79	"ACBD7,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,HACD1,HSPA14,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,MALRD1,MCM10,MEIG1,MRC1,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM"
TCGA.AG.3726	10	2773645	9987129	3653	0.3965	SMALL-GAIN	NONFOCAL	30	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,FAM208B,FBXO18,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,NET1,PFKFB3,PFKP,PITRM1,PRKCQ,RBM17,SFMBT2,TAF3,TUBAL3,UCN3"
TCGA.AA.3952	10	2902608	38237436	14423	0.4034	SMALL-GAIN	NONFOCAL	143	Too-Many
TCGA.AA.3531	10	3009101	6082395	1566	0.478	SMALL-GAIN	NONFOCAL	20	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,IL15RA,IL2RA,KLF6,NET1,PFKP,PITRM1,TUBAL3,UCN3"
TCGA.AF.3914.01A	10	3185529	13693848	494	0.4654	SMALL-GAIN	NONFOCAL	48	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,BEND7,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,MCM10,NET1,NUDT5,OPTN,PFKFB3,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,RBM17,SEC61A2,SEPHS1,SFMBT2,TAF3,TUBAL3,UCMA,UCN3,UPF2,USP6NL"
TCGA.AA.3666	10	4380853	6863483	1251	0.4485	SMALL-GAIN	NONFOCAL	20	"AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,CALML3,CALML5,FAM208B,FBXO18,GDI2,IL15RA,IL2RA,NET1,PFKFB3,PRKCQ,RBM17,TUBAL3,UCN3"
TCGA.AG.A016.01A	10	5045888	17756512	688	0.3806	SMALL-GAIN	NONFOCAL	67	"ACBD7,AKR1C2,AKR1C3,AKR1C4,ANKRD16,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,HACD1,HSPA14,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,MCM10,MEIG1,NET1,NMT2,NUDT5,OLAH,OPTN,PFKFB3,PHYH,PRKCQ,PROSER2,PRPF18,PTER,RBM17,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,ST8SIA6,STAM,SUV39H2,TAF3,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM"
TCGA.AA.3872	10	9517054	19363075	4308	0.5058	SMALL-GAIN	NONFOCAL	49	"ACBD7,ARL5B,BEND7,C10orf111,C1QL3,CACNB2,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,ECHDC3,FAM107B,FAM171A1,FAM188A,FRMD4A,HACD1,HSPA14,ITGA8,MALRD1,MCM10,MEIG1,MRC1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PHYH,PROSER2,PRPF18,PTER,RPP38,RSU1,SEC61A2,SEPHS1,SLC39A12,ST8SIA6,STAM,SUV39H2,TMEM236,TRDMT1,UCMA,UPF2,USP6NL,VIM"
TCGA.A6.A567	10	9751307	13407967	1647	0.6426	SMALL-GAIN	NONFOCAL	16	"CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,MCM10,NUDT5,OPTN,PHYH,PROSER2,SEC61A2,SEPHS1,UCMA,UPF2,USP6NL"
TCGA.AA.3666	10	9944809	14839070	2475	0.4171	SMALL-GAIN	NONFOCAL	20	"BEND7,CAMK1D,CCDC3,CDC123,CELF2,DHTKD1,ECHDC3,FAM107B,FRMD4A,MCM10,NUDT5,OPTN,PHYH,PROSER2,PRPF18,SEC61A2,SEPHS1,UCMA,UPF2,USP6NL"
TCGA.AA.3845	10	11197673	35671384	9461	0.393	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AF.3914.01A	10	13705380	17275535	226	0.4332	SMALL-GAIN	NONFOCAL	21	"ACBD7,C10orf111,C1QL3,CDNF,CUBN,DCLRE1C,FAM107B,FAM171A1,FAM188A,FRMD4A,HSPA14,ITGA8,MEIG1,NMT2,OLAH,PTER,RPP38,RSU1,SUV39H2,TRDMT1,VIM"
TCGA.AA.A02K.01A	10	16979554	25509930	367	0.4541	SMALL-GAIN	NONFOCAL	37	"ARHGAP21,ARL5B,ARMC3,BMI1,C10orf113,C10orf67,CACNB2,CASC10,COMMD3,COMMD3-BMI1,CUBN,DNAJC1,EBLN1,ENKUR,GPR158,HACD1,KIAA1217,MALRD1,MLLT10,MRC1,MSRB2,NEBL,NSUN6,OTUD1,PIP4K2A,PLXDC2,PRTFDC1,PTF1A,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,THNSL1,TMEM236,TRDMT1,VIM"
TCGA.AF.3914.01A	10	17277776	21461263	137	0.5102	SMALL-GAIN	NONFOCAL	14	"ARL5B,C10orf113,CACNB2,HACD1,MALRD1,MRC1,NEBL,NSUN6,PLXDC2,SLC39A12,ST8SIA6,STAM,TMEM236,VIM"
TCGA.AG.A016.01A	10	17949513	27702643	434	0.4001	SMALL-GAIN	NONFOCAL	41	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP21,ARL5B,ARMC3,BMI1,C10orf113,C10orf67,CACNB2,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,ENKUR,GAD2,GPR158,KIAA1217,MALRD1,MASTL,MLLT10,MRC1,MSRB2,MYO3A,NEBL,NSUN6,OTUD1,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,SKIDA1,SLC39A12,SPAG6,THNSL1,TMEM236,YME1L1"
TCGA.AA.3872	10	19601685	42469893	6663	0.4887	SMALL-GAIN	NONFOCAL	68	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARHGAP21,ARMC3,ARMC4,BAMBI,BMI1,C10orf113,C10orf126,C10orf67,CASC10,CCDC7,CCNY,COMMD3,COMMD3-BMI1,CREM,CUL2,DNAJC1,EBLN1,ENKUR,EPC1,FZD8,GAD2,GJD4,GPR158,ITGB1,KIAA1217,KIAA1462,KIF5B,LYZL1,LYZL2,MALRD1,MAP3K8,MASTL,MKX,MLLT10,MPP7,MSRB2,MTPAP,MTRNR2L7,MYO3A,NEBL,NRP1,OTUD1,PARD3,PDSS1,PIP4K2A,PLXDC2,PRTFDC1,PTCHD3,PTF1A,RAB18,SKIDA1,SPAG6,SVIL,THNSL1,WAC,YME1L1,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF37A,ZNF438"
TCGA.AA.A02K.01A	10	26385259	37430769	506	0.5733	SMALL-GAIN	NONFOCAL	38	"ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARMC4,BAMBI,C10orf126,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GAD2,GJD4,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MTPAP,MYO3A,NRP1,PARD3,PDSS1,PTCHD3,RAB18,SVIL,WAC,YME1L1,ZEB1,ZNF438"
TCGA.AA.A00N.01A	10	27702059	32150276	167	0.4975	SMALL-GAIN	NONFOCAL	17	"ARHGAP12,ARMC4,BAMBI,C10orf126,KIAA1462,LYZL1,LYZL2,MAP3K8,MKX,MPP7,MTPAP,PTCHD3,RAB18,SVIL,WAC,ZEB1,ZNF438"
TCGA.AG.A016.01A	10	28101393	37425471	323	0.4037	SMALL-GAIN	NONFOCAL	26	"ANKRD30A,ARHGAP12,ARMC4,BAMBI,C10orf126,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GJD4,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MPP7,MTPAP,NRP1,PARD3,SVIL,WAC,ZEB1,ZNF438"
TCGA.A6.2686	10	30150822	38677788	2747	0.4285	SMALL-GAIN	NONFOCAL	24	"ANKRD30A,ARHGAP12,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GJD4,ITGB1,KIAA1462,KIF5B,LYZL2,MAP3K8,MTPAP,MTRNR2L7,NRP1,PARD3,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF37A,ZNF438"
TCGA.AA.3861.01A	10	35360090	43280955	98	0.3835	SMALL-GAIN	NONFOCAL	13	"ANKRD30A,BMS1,CCNY,CREM,CUL2,FZD8,GJD4,MTRNR2L7,ZNF248,ZNF25,ZNF33A,ZNF33B,ZNF37A"
TCGA.CM.5862	10	38956878	46207800	1150	0.5826	SMALL-GAIN	NONFOCAL	21	"ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FXYD4,HNRNPF,MARCH8,OR13A1,RASGEF1A,RASSF4,RET,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.A6.3808.01A	10	49392558	51051539	197	0.4581	SMALL-GAIN	NONFOCAL	18	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FRMPD2,LRRC18,MAPK8,OGDHL,PARG,PGBD3,SLC18A3,VSTM4,WDFY4"
TCGA.AG.A020	10	49777632	51122581	600	0.5703	SMALL-GAIN	NONFOCAL	16	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,LRRC18,OGDHL,PARG,PGBD3,SLC18A3,VSTM4,WDFY4"
TCGA.A6.3808.01A	10	51974455	70048643	410	0.5793	SMALL-GAIN	NONFOCAL	42	"A1CF,ADO,ANK3,ARID5B,ASAH2,ASAH2B,ATOH7,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,CTNNA3,DKK1,DNAJC12,EGR2,FAM13C,HERC4,IPMK,JMJD1C,LRRTM3,MBL2,MRLN,MTRNR2L5,MYPN,NRBF2,PBLD,PCDH15,PHYHIPL,PRKG1,REEP3,RHOBTB1,RTKN2,SGMS1,SIRT1,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AA.3509.01A	10	52575719	64148107	258	0.3984	SMALL-GAIN	NONFOCAL	26	"A1CF,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,CSTF2T,DKK1,FAM13C,IPMK,MBL2,MRLN,MTRNR2L5,PCDH15,PHYHIPL,PRKG1,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.AA.3666	10	58237679	66281946	2755	0.4047	SMALL-GAIN	NONFOCAL	23	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,EGR2,FAM13C,IPMK,JMJD1C,MRLN,NRBF2,PHYHIPL,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365"
TCGA.F4.6808	10	61031632	65927515	1700	0.4899	SMALL-GAIN	NONFOCAL	17	"ADO,ANK3,ARID5B,C10orf107,CCDC6,CDK1,EGR2,FAM13C,JMJD1C,MRLN,NRBF2,REEP3,RHOBTB1,RTKN2,SLC16A9,TMEM26,ZNF365"
TCGA.G4.6299	10	62887741	69378539	2194	0.5991	SMALL-GAIN	NONFOCAL	12	"ADO,ARID5B,C10orf107,CTNNA3,EGR2,JMJD1C,LRRTM3,NRBF2,REEP3,RTKN2,TMEM26,ZNF365"
TCGA.DM.A1HA	10	66935388	72176773	1807	0.5095	SMALL-GAIN	NONFOCAL	36	"AIFM2,ATOH7,C10orf35,CCAR1,COL13A1,CTNNA3,DDX21,DDX50,DNA2,DNAJC12,EIF4EBP2,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,LRRC20,LRRTM3,MYPN,NEUROG3,NPFFR1,PBLD,PPA1,RUFY2,SAR1A,SIRT1,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TSPAN15,TYSND1,VPS26A"
TCGA.AA.3666	10	67977891	83590260	5057	0.4127	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.AA.A01Q.01A	10	69366588	71060532	200	0.6482	SMALL-GAIN	NONFOCAL	22	"ATOH7,CCAR1,CTNNA3,DDX21,DDX50,DNA2,DNAJC12,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,MYPN,PBLD,RUFY2,SIRT1,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,VPS26A"
TCGA.AA.3941	10	69475289	71343399	449	0.4973	SMALL-GAIN	NONFOCAL	24	"ATOH7,CCAR1,DDX21,DDX50,DNA2,DNAJC12,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,MYPN,NEUROG3,PBLD,RUFY2,SIRT1,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TSPAN15,VPS26A"
TCGA.AA.3982	10	69523325	71344586	446	0.4987	SMALL-GAIN	NONFOCAL	24	"ATOH7,CCAR1,DDX21,DDX50,DNA2,DNAJC12,HERC4,HK1,HKDC1,HNRNPH3,KIAA1279,MYPN,NEUROG3,PBLD,RUFY2,SIRT1,SLC25A16,SRGN,STOX1,SUPV3L1,TACR2,TET1,TSPAN15,VPS26A"
TCGA.AA.A010.01A	10	70206038	70948982	107	0.3984	SMALL-GAIN	NONFOCAL	11	"CCAR1,DDX21,DDX50,DNA2,KIAA1279,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,VPS26A"
TCGA.AG.3598	10	70621085	86296620	5394	0.5707	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AA.3982	10	71363180	76146244	1459	0.4829	SMALL-GAIN	NONFOCAL	58	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf105,C10orf35,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,DDIT4,DNAJB12,DNAJC9,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,SAR1A,SEC24C,SGPL1,SLC29A3,SPOCK2,SYNPO2L,TBATA,TYSND1,UNC5B,USP54,VCL,ZSWIM8"
TCGA.AA.3941	10	71393495	76146244	1434	0.4615	SMALL-GAIN	NONFOCAL	57	"ADAMTS14,ADK,AGAP5,AIFM2,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf105,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,COL13A1,DDIT4,DNAJB12,DNAJC9,ECD,EIF4EBP2,FAM149B1,FUT11,H2AFY2,LRRC20,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NODAL,NPFFR1,NUDT13,OIT3,P4HA1,PALD1,PCBD1,PLA2G12B,PLAU,PPA1,PPP3CB,PRF1,PSAP,SAR1A,SEC24C,SGPL1,SLC29A3,SPOCK2,SYNPO2L,TBATA,TYSND1,UNC5B,USP54,VCL,ZSWIM8"
TCGA.AA.3530	10	72941108	74136696	434	0.4151	SMALL-GAIN	NONFOCAL	13	"ANAPC16,ASCC1,C10orf105,C10orf54,CDH23,CHST3,DDIT4,DNAJB12,MICU1,PSAP,SLC29A3,SPOCK2,UNC5B"
TCGA.AA.A010.01A	10	72972695	75000644	226	0.4437	SMALL-GAIN	NONFOCAL	20	"ANAPC16,ASCC1,C10orf105,C10orf54,CDH23,CHST3,DDIT4,DNAJB12,ECD,FAM149B1,MCU,MICU1,NUDT13,OIT3,P4HA1,PLA2G12B,PSAP,SLC29A3,SPOCK2,UNC5B"
TCGA.AA.A01R	10	73281737	135434550	21679	0.3808	SMALL-GAIN	NONFOCAL	420	Too-Many
TCGA.DM.A1HA	10	73392997	78227688	1068	0.5035	SMALL-GAIN	NONFOCAL	47	"ADK,AGAP5,ANAPC16,ANXA7,AP3M1,ASCC1,C10orf105,C10orf11,C10orf54,C10orf55,CAMK2G,CDH23,CFAP70,CHCHD1,CHST3,COMTD1,DDIT4,DNAJB12,DNAJC9,DUPD1,DUSP13,ECD,FAM149B1,FUT11,KAT6B,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,OIT3,P4HA1,PLA2G12B,PLAU,PPP3CB,PSAP,SAMD8,SEC24C,SPOCK2,SYNPO2L,USP54,VCL,VDAC2,ZNF503,ZSWIM8"
TCGA.CI.6619	10	75919689	85154924	3264	0.4346	SMALL-GAIN	NONFOCAL	31	"ADK,ANXA11,C10orf11,COMTD1,DLG5,DUPD1,DUSP13,DYDC1,DYDC2,EIF5AL1,FAM213A,KAT6B,KCNMA1,MAT1A,NRG3,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SAMD8,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,VDAC2,ZCCHC24,ZMIZ1,ZNF503"
TCGA.DM.A1D9	10	77600213	82268776	1833	0.4512	SMALL-GAIN	NONFOCAL	21	"ANXA11,C10orf11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.G4.6299	10	78441895	82877973	1748	0.516	SMALL-GAIN	NONFOCAL	21	"ANXA11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.AA.3941	10	79016282	82533747	1362	0.3833	SMALL-GAIN	NONFOCAL	21	"ANXA11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,KCNMA1,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.AA.3982	10	79432479	82533747	1151	0.4241	SMALL-GAIN	NONFOCAL	20	"ANXA11,DLG5,DYDC1,DYDC2,EIF5AL1,FAM213A,MAT1A,NUTM2B,PLAC9,POLR3A,PPIF,RPS24,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.DM.A1HA	10	79965197	83873130	1460	0.4875	SMALL-GAIN	NONFOCAL	18	"ANXA11,DYDC1,DYDC2,EIF5AL1,FAM213A,MAT1A,NRG3,NUTM2B,PLAC9,PPIF,SFTPA1,SFTPA2,SFTPD,SH2D4B,TMEM254,TSPAN14,ZCCHC24,ZMIZ1"
TCGA.G4.6299	10	82896875	89070744	2225	0.5481	SMALL-GAIN	NONFOCAL	21	"ADIRF,AGAP11,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,GHITM,GLUD1,GRID1,LDB3,LRIT1,LRIT2,MMRN2,NRG3,NUTM2A,OPN4,RGR,SNCG,WAPAL"
TCGA.AA.3941	10	87544266	89103047	406	0.4243	SMALL-GAIN	NONFOCAL	13	"ADIRF,AGAP11,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,LDB3,MMRN2,NUTM2A,OPN4,SNCG,WAPAL"
TCGA.AZ.4684.01A	10	89120210	90562605	77	0.4442	SMALL-GAIN	NONFOCAL	11	"ATAD1,KLLN,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,PAPSS2,PTEN,RNLS"
TCGA.G4.6299	10	89179800	117471614	9098	0.5656	SMALL-GAIN	NONFOCAL	220	Too-Many
TCGA.AA.3509.01A	10	89264626	93260899	231	0.3957	SMALL-GAIN	NONFOCAL	30	"ACTA2,ANKRD1,ANKRD22,ATAD1,CH25H,FAS,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,PANK1,PAPSS2,PCGF5,PTEN,RNLS,RPP30,SLC16A12,STAMBPL1"
TCGA.AG.A01W.01A	10	89675237	94206053	290	0.5169	SMALL-GAIN	NONFOCAL	32	"ACTA2,ANKRD1,ANKRD22,BTAF1,CH25H,CPEB3,FAS,FGFBP3,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MARCH5,PANK1,PCGF5,PPP1R3C,PTEN,RNLS,RPP30,SLC16A12,STAMBPL1,TNKS2"
TCGA.CA.5254	10	90093297	91153698	439	0.4868	SMALL-GAIN	NONFOCAL	16	"ACTA2,ANKRD22,CH25H,FAS,IFIT1,IFIT1B,IFIT2,IFIT3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,RNLS,STAMBPL1"
TCGA.AA.3850	10	93643194	95400946	443	0.39955	SMALL-GAIN	NONFOCAL	15	"BTAF1,CEP55,CPEB3,CYP26A1,CYP26C1,EXOC6,FFAR4,FGFBP3,HHEX,IDE,KIF11,MARCH5,MYOF,PDE6C,RBP4"
TCGA.AA.3941	10	93798651	95418101	433	0.4718	SMALL-GAIN	NONFOCAL	13	"CEP55,CPEB3,CYP26A1,CYP26C1,EXOC6,FFAR4,HHEX,IDE,KIF11,MARCH5,MYOF,PDE6C,RBP4"
TCGA.AA.3982	10	98367383	99822586	417	0.5051	SMALL-GAIN	NONFOCAL	24	"ANKRD2,ARHGAP19,AVPI1,C10orf12,C10orf62,CRTAC1,EXOSC1,FRAT1,FRAT2,GOLGA7B,HOGA1,LCOR,MARVELD1,MMS19,MORN4,PGAM1,PI4K2A,PIK3AP1,RRP12,SFRP5,SLIT1,UBTD1,ZDHHC16,ZFYVE27"
TCGA.AA.3941	10	100811849	106766397	1507	0.3879	SMALL-GAIN	NONFOCAL	86	"ABCC2,ACTR1A,ARL3,AS3MT,BLOC1S2,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CHUK,CNNM1,CNNM2,COL17A1,COX15,CPN1,CUEDC2,CUTC,CWF19L1,CYP17A1,DNMBP,DPCD,ELOVL3,ENTPD7,ERLIN1,FAM178A,FBXL15,FBXW4,FGF8,GBF1,GOT1,GSTO1,GSTO2,HIF1AN,HPS6,HPSE2,INA,ITPRIP,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NEURL1,NFKB2,NKX2-3,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDZD7,PITX3,PKD2L1,POLL,PPRC1,PSD,RPEL1,SCD,SEC31B,SEMA4G,SFR1,SFXN2,SFXN3,SH3PXD2A,SLC25A28,SLK,SORCS3,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L,WNT8B"
TCGA.AA.3850	10	102248883	105657143	651	0.42085	SMALL-GAIN	NONFOCAL	59	"ACTR1A,ARL3,AS3MT,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CNNM2,CUEDC2,CYP17A1,DPCD,ELOVL3,FAM178A,FBXL15,FBXW4,FGF8,GBF1,HIF1AN,HPS6,INA,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NDUFB8,NEURL1,NFKB2,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDZD7,PITX3,POLL,PPRC1,PSD,RPEL1,SEC31B,SEMA4G,SFXN2,SFXN3,SH3PXD2A,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L"
TCGA.CM.5348	10	114789076	135434550	8339	0.449	SMALL-GAIN	NONFOCAL	127	Too-Many
TCGA.AA.3850	10	120350278	121744447	430	0.44205	SMALL-GAIN	NONFOCAL	14	"BAG3,CACUL1,EIF3A,FAM45A,GRK5,INPP5F,MCMBP,NANOS1,PRDX3,PRLHR,RGS10,SEC23IP,SFXN4,TIAL1"
TCGA.AA.A010.01A	10	127512080	129877785	138	0.4849	SMALL-GAIN	NONFOCAL	11	"ADAM12,BCCIP,C10orf90,CLRN3,DHX32,DOCK1,FAM196A,FANK1,FOXI2,NPS,PTPRE"
TCGA.AA.3850	11	206766	2063597	326	0.48035	SMALL-GAIN	NONFOCAL	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AA.3989	11	206766	2087219	326	0.3949	SMALL-GAIN	NONFOCAL	64	"ANO9,AP2A2,ATHL1,B4GALNT4,BET1L,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TMEM80,TNNI2,TNNT3,TOLLIP,TSPAN4"
TCGA.AA.3556	11	206766	2710821	463	0.4632	SMALL-GAIN	NONFOCAL	75	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CD151,CD81,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AA.3982	11	206766	4235774	880	0.5188	SMALL-GAIN	NONFOCAL	93	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RHOG,RIC8A,RNH1,RPLP2,RRM1,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AG.3575	11	206766	7847207	2600	0.41	SMALL-GAIN	NONFOCAL	198	Too-Many
TCGA.D5.6536	11	206766	17144667	6207	0.3824	SMALL-GAIN	NONFOCAL	259	Too-Many
TCGA.AD.6901	11	206766	20843890	7844	0.4752	SMALL-GAIN	NONFOCAL	298	Too-Many
TCGA.A6.2671	11	206766	49103689	17206	0.52	SMALL-GAIN	NONFOCAL	428	Too-Many
TCGA.AD.6888	11	206766	50520258	17369	0.452	SMALL-GAIN	NONFOCAL	431	Too-Many
TCGA.AG.3591	11	206766	50751357	17404	0.3886	SMALL-GAIN	NONFOCAL	431	Too-Many
TCGA.AM.5820	11	270714	1537516	171	0.672	SMALL-GAIN	NONFOCAL	45	"ANO9,AP2A2,ATHL1,B4GALNT4,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,MOB2,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80,TOLLIP,TSPAN4"
TCGA.AA.A02F.01A	11	1605604	51515235	2443	0.628	SMALL-GAIN	NONFOCAL	382	Too-Many
TCGA.AG.A01W.01A	11	1725458	2900201	125	0.3988	SMALL-GAIN	NONFOCAL	19	"ASCL2,C11orf21,CD81,CTSD,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,LSP1,MRPL23,SYT8,TH,TNNI2,TNNT3,TRPM5,TSPAN32,TSSC4"
TCGA.AA.3850	11	2092982	2615599	106	0.38745	SMALL-GAIN	NONFOCAL	11	"ASCL2,C11orf21,CD81,IGF2,INS,INS-IGF2,KCNQ1,TH,TRPM5,TSPAN32,TSSC4"
TCGA.AA.3850	11	2641128	4236708	438	0.40265	SMALL-GAIN	NONFOCAL	19	"ART1,ART5,CARS,CDKN1C,CHRNA10,KCNQ1,MRGPRE,MRGPRG,NAP1L4,NUP98,OSBPL5,PGAP2,PHLDA2,RHOG,RRM1,SLC22A18,SLC22A18AS,STIM1,ZNF195"
TCGA.AG.3909.01A	11	4388544	5079871	49	0.5511	SMALL-GAIN	NONFOCAL	25	"C11orf40,MMP26,OR51A2,OR51A4,OR51A7,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51L1,OR51S1,OR51T1,OR52B4,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM68"
TCGA.AA.3862.01A	11	4673979	7067850	274	0.5676	SMALL-GAIN	NONFOCAL	87	"APBB1,ARFIP2,C11orf42,CCKBR,CNGA4,DCHS1,DNHD1,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,HPX,ILK,MMP26,MRPL17,NLRP14,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52J3,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,OR6A2,PRKCDBP,RRP8,SMPD1,TAF10,TIMM10B,TPP1,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,UBQLN3,UBQLNL,ZNF214,ZNF215"
TCGA.AA.3861.01A	11	4673979	7070854	274	0.5094	SMALL-GAIN	NONFOCAL	87	"APBB1,ARFIP2,C11orf42,CCKBR,CNGA4,DCHS1,DNHD1,FAM160A2,HBB,HBD,HBE1,HBG1,HBG2,HPX,ILK,MMP26,MRPL17,NLRP14,OR10A2,OR10A4,OR10A5,OR2AG1,OR2AG2,OR2D2,OR2D3,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B2,OR52B6,OR52D1,OR52E2,OR52E4,OR52E6,OR52E8,OR52H1,OR52J3,OR52L1,OR52N1,OR52N2,OR52N4,OR52N5,OR52R1,OR52W1,OR56A1,OR56A3,OR56A4,OR56A5,OR56B1,OR56B4,OR6A2,PRKCDBP,RRP8,SMPD1,TAF10,TIMM10B,TPP1,TRIM22,TRIM3,TRIM34,TRIM5,TRIM6,TRIM6-TRIM34,UBQLN3,UBQLNL,ZNF214,ZNF215"
TCGA.DC.6160.01A	11	4781202	18553416	1229	0.4029	SMALL-GAIN	NONFOCAL	178	Too-Many
TCGA.A6.5661	11	4794118	5467581	368	0.5326	SMALL-GAIN	NONFOCAL	28	"HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51F2,OR51G1,OR51G2,OR51I1,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52E2,OR52J3,OR52R1"
TCGA.AG.3909.01A	11	5220958	5565743	34	0.5133	SMALL-GAIN	NONFOCAL	17	"HBB,HBD,HBE1,HBG1,HBG2,OR51B2,OR51B4,OR51B5,OR51B6,OR51I1,OR51I2,OR51M1,OR51Q1,OR51V1,OR52D1,UBQLN3,UBQLNL"
TCGA.AA.A00F.01A	11	6243622	6661851	103	0.3894	SMALL-GAIN	NONFOCAL	16	"APBB1,ARFIP2,CCKBR,CNGA4,DCHS1,DNHD1,FAM160A2,HPX,ILK,PRKCDBP,RRP8,SMPD1,TAF10,TIMM10B,TPP1,TRIM3"
TCGA.AG.3575	11	7879238	133682971	40562	0.4205	SMALL-GAIN	NONFOCAL	1056	Too-Many
TCGA.AA.3982	11	7957952	10440343	795	0.388	SMALL-GAIN	NONFOCAL	24	"ADM,AKIP1,ASCL3,C11orf16,DENND5A,EIF3F,IPO7,LMO1,NLRP10,NRIP3,OR10A3,RIC3,RPL27A,SBF2,SCUBE2,ST5,STK33,SWAP70,TMEM41B,TMEM9B,TRIM66,TUB,WEE1,ZNF143"
TCGA.AA.A010.01A	11	9805850	11924773	137	0.4629	SMALL-GAIN	NONFOCAL	13	"ADM,AMPD3,CSNK2A3,CTR9,EIF4G2,GALNT18,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,USP47,ZBED5"
TCGA.A6.3808.01A	11	9853744	14276045	249	0.5379	SMALL-GAIN	NONFOCAL	24	"ADM,AMPD3,ARNTL,BTBD10,CSNK2A3,CTR9,DKK3,EIF4G2,FAR1,GALNT18,LYVE1,MICAL2,MICALCL,MRVI1,MTRNR2L8,PARVA,PTH,RASSF10,RNF141,SBF2,SPON1,TEAD1,USP47,ZBED5"
TCGA.D5.5538	11	10792325	13185225	1404	0.3827	SMALL-GAIN	NONFOCAL	12	"CSNK2A3,CTR9,DKK3,EIF4G2,GALNT18,MICAL2,MICALCL,PARVA,RASSF10,TEAD1,USP47,ZBED5"
TCGA.G4.6314	11	11575456	14971606	1387	0.6	SMALL-GAIN	NONFOCAL	18	"ARNTL,BTBD10,COPB1,CYP2R1,DKK3,FAR1,GALNT18,MICAL2,MICALCL,PARVA,PDE3B,PSMA1,PTH,RASSF10,RRAS2,SPON1,TEAD1,USP47"
TCGA.AG.3909.01A	11	11642869	14096831	127	0.4372	SMALL-GAIN	NONFOCAL	13	"ARNTL,BTBD10,DKK3,FAR1,GALNT18,MICAL2,MICALCL,PARVA,PTH,RASSF10,SPON1,TEAD1,USP47"
TCGA.AA.A00N.01A	11	11971394	14882719	166	0.5045	SMALL-GAIN	NONFOCAL	16	"ARNTL,BTBD10,COPB1,DKK3,FAR1,MICAL2,MICALCL,PARVA,PDE3B,PSMA1,PTH,RASSF10,RRAS2,SPON1,TEAD1,USP47"
TCGA.AA.A010.01A	11	12495240	14541746	107	0.4732	SMALL-GAIN	NONFOCAL	11	"ARNTL,BTBD10,COPB1,FAR1,PARVA,PSMA1,PTH,RASSF10,RRAS2,SPON1,TEAD1"
TCGA.A6.3808.01A	11	17417107	18257332	152	0.6187	SMALL-GAIN	NONFOCAL	12	"ABCC8,KCNC1,MRGPRX3,MRGPRX4,MYOD1,OTOG,SAA2-SAA4,SAA4,SAAL1,SERGEF,TPH1,USH1C"
TCGA.G4.6314	11	17810959	19251825	523	0.5538	SMALL-GAIN	NONFOCAL	25	"CSRP3,E2F8,GTF2H1,HPS5,IGSF22,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,PTPN5,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SPTY2D1,TMEM86A,TPH1,TSG101,UEVLD,ZDHHC13"
TCGA.D5.6536	11	17833726	42437932	8944	0.392	SMALL-GAIN	NONFOCAL	95	"ABTB2,ANO3,ANO5,APIP,ARL14EP,BBOX1,BDNF,C11orf74,C11orf91,CAPRIN1,CAT,CCDC179,CCDC34,CCDC73,CD44,CD59,COMMD9,CSRP3,CSTF3,DBX1,DCDC1,DCDC5,DEPDC7,DNAJC24,E2F8,EHF,EIF3M,ELF5,ELP4,FANCF,FBXO3,FIBIN,FJX1,FSHB,GAS2,GTF2H1,HIPK3,HPS5,HTATIP2,IGSF22,IMMP1L,KCNA4,KIAA1549L,KIF18A,LDHA,LDHAL6A,LDHC,LDLRAD3,LGR4,LIN7C,LMO2,LRRC4C,LUZP2,METTL15,MPPED2,MRGPRX1,MRGPRX2,MRGPRX3,MRGPRX4,MUC15,NAT10,NAV2,NELL1,PAMR1,PAX6,PDHX,PRMT3,PRR5L,PRRG4,PTPN5,QSER1,RAG1,RAG2,RCN1,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SLC17A6,SLC1A2,SLC5A12,SLC6A5,SPTY2D1,SVIP,TCP11L1,TMEM86A,TPH1,TRAF6,TRIM44,TSG101,UEVLD,WT1,ZDHHC13"
TCGA.AA.A010.01A	11	18332286	19138711	103	0.4822	SMALL-GAIN	NONFOCAL	14	"GTF2H1,HPS5,IGSF22,LDHA,LDHAL6A,LDHC,MRGPRX1,MRGPRX2,PTPN5,SPTY2D1,TMEM86A,TSG101,UEVLD,ZDHHC13"
TCGA.A6.3808.01A	11	18451272	32739587	485	0.4857	SMALL-GAIN	NONFOCAL	51	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,CCDC73,CSRP3,DBX1,DCDC1,DCDC5,DNAJC24,E2F8,EIF3M,ELP4,FANCF,FIBIN,FSHB,GAS2,HTATIP2,IGSF22,IMMP1L,KCNA4,KIF18A,LDHAL6A,LDHC,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MRGPRX1,MRGPRX2,MUC15,NAV2,NELL1,PAX6,PRMT3,PTPN5,RCN1,SLC17A6,SLC5A12,SLC6A5,SPTY2D1,SVIP,TMEM86A,TSG101,UEVLD,WT1,ZDHHC13"
TCGA.AZ.4684.01A	11	20699441	31784926	233	0.666	SMALL-GAIN	NONFOCAL	28	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,DCDC1,DCDC5,DNAJC24,ELP4,FANCF,FIBIN,FSHB,GAS2,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AA.3509.01A	11	20805179	31784926	232	0.4994	SMALL-GAIN	NONFOCAL	28	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,DCDC1,DCDC5,DNAJC24,ELP4,FANCF,FIBIN,FSHB,GAS2,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AD.6901	11	20852583	55983065	9797	0.5039	SMALL-GAIN	NONFOCAL	163	Too-Many
TCGA.AA.A00N.01A	11	27406751	31784926	98	0.5981	SMALL-GAIN	NONFOCAL	14	"ARL14EP,BDNF,DCDC1,DCDC5,DNAJC24,ELP4,FSHB,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,METTL15,MPPED2"
TCGA.AF.6136	11	31679672	50651566	5881	0.384	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AA.3982	11	32309975	34869547	896	0.3804	SMALL-GAIN	NONFOCAL	20	"ABTB2,C11orf91,CAPRIN1,CAT,CCDC73,CD59,CSTF3,DEPDC7,EHF,EIF3M,ELF5,FBXO3,HIPK3,KIAA1549L,LMO2,NAT10,PRRG4,QSER1,TCP11L1,WT1"
TCGA.AA.A00N.01A	11	33886130	43333636	192	0.5511	SMALL-GAIN	NONFOCAL	23	"ABTB2,API5,APIP,C11orf74,CAPRIN1,CAT,CD44,COMMD9,EHF,ELF5,FJX1,LDLRAD3,LMO2,LRRC4C,NAT10,PAMR1,PDHX,PRR5L,RAG1,RAG2,SLC1A2,TRAF6,TRIM44"
TCGA.A6.3808.01A	11	34118014	45892348	325	0.6284	SMALL-GAIN	NONFOCAL	38	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,API5,APIP,C11orf74,C11orf96,CAPRIN1,CAT,CD44,CD82,CHST1,COMMD9,CRY2,EHF,ELF5,EXT2,FJX1,HSD17B12,LDLRAD3,LRRC4C,NAT10,PAMR1,PDHX,PRDM11,PRR5L,RAG1,RAG2,SLC1A2,SLC35C1,SYT13,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17"
TCGA.AA.A00N.01A	11	43363920	45307559	122	0.4966	SMALL-GAIN	NONFOCAL	14	"ACCS,ACCSL,ALKBH3,ALX4,API5,C11orf96,CD82,EXT2,HSD17B12,PRDM11,SYT13,TP53I11,TSPAN18,TTC17"
TCGA.AA.3982	11	44280089	48268481	1071	0.4598	SMALL-GAIN	NONFOCAL	51	"ACP2,AGBL2,ALX4,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4B1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,ZNF408"
TCGA.AG.A00Y.01A	11	44331195	48373685	477	0.3808	SMALL-GAIN	NONFOCAL	55	"ACP2,AGBL2,ALX4,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4B1,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,ZNF408"
TCGA.AG.3909.01A	11	46398595	46910915	124	0.3895	SMALL-GAIN	NONFOCAL	11	"AMBRA1,ARHGAP1,ATG13,CHRM4,CKAP5,DGKZ,F2,HARBI1,LRP4,MDK,ZNF408"
TCGA.AA.A010.01A	11	47660224	49229803	115	0.4339	SMALL-GAIN	NONFOCAL	15	"AGBL2,FNBP4,FOLH1,MTCH2,NUP160,OR4A47,OR4B1,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PTPRJ,TRIM49B,TRIM64C"
TCGA.AA.3861.01A	11	47809705	55606196	102	0.5286	SMALL-GAIN	NONFOCAL	30	"FOLH1,NUP160,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5D13,OR5D14,OR5D18,OR5L1,OR5L2,PTPRJ,TRIM48,TRIM49B,TRIM64C"
TCGA.AA.3862.01A	11	47809705	55606196	102	0.6108	SMALL-GAIN	NONFOCAL	30	"FOLH1,NUP160,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5D13,OR5D14,OR5D18,OR5L1,OR5L2,PTPRJ,TRIM48,TRIM49B,TRIM64C"
TCGA.CK.5914.01A	11	47869753	49197364	43	0.3892	SMALL-GAIN	NONFOCAL	12	"FOLH1,NUP160,OR4A47,OR4B1,OR4C3,OR4C45,OR4S1,OR4X1,OR4X2,PTPRJ,TRIM49B,TRIM64C"
TCGA.AA.A00N.01A	11	47869753	55606196	76	0.6487	SMALL-GAIN	NONFOCAL	30	"FOLH1,NUP160,OR4A15,OR4A16,OR4A47,OR4A5,OR4B1,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5D13,OR5D14,OR5D18,OR5L1,OR5L2,PTPRJ,TRIM48,TRIM49B,TRIM64C"
TCGA.AA.3509.01A	11	48266657	56949408	94	0.5138	SMALL-GAIN	NONFOCAL	63	"FOLH1,LRRC55,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR4X2,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AZ.4684.01A	11	48285375	56756342	92	0.6676	SMALL-GAIN	NONFOCAL	60	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.G4.6299	11	48437936	55859424	498	0.591	SMALL-GAIN	NONFOCAL	29	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C46,OR4C6,OR4P4,OR4S2,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5L1,OR5L2,OR5W2,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.A6.3808.01A	11	55110705	55606196	17	0.3817	SMALL-GAIN	NONFOCAL	13	"OR4A15,OR4A16,OR4C11,OR4C15,OR4C16,OR4C6,OR4P4,OR4S2,OR5D13,OR5D14,OR5D18,OR5L1,OR5L2"
TCGA.AG.3591	11	55444867	56583648	322	0.4479	SMALL-GAIN	NONFOCAL	39	"OR10AG1,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM51"
TCGA.AG.3909.01A	11	57509026	58274608	39	0.4236	SMALL-GAIN	NONFOCAL	15	"BTBD18,C11orf31,CTNND1,OR10Q1,OR10W1,OR1S1,OR1S2,OR5B12,OR5B17,OR5B2,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2"
TCGA.AA.A02H.01A	11	57575595	58491833	51	0.5175	SMALL-GAIN	NONFOCAL	18	"CNTF,CTNND1,GLYAT,LPXN,OR10Q1,OR10W1,OR1S1,OR1S2,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,ZFP91"
TCGA.AG.A01Y	11	60070252	81497906	5530	0.4147	SMALL-GAIN	NONFOCAL	371	Too-Many
TCGA.AA.3982	11	60655954	61972762	324	0.5297	SMALL-GAIN	NONFOCAL	33	"BEST1,CD5,CD6,CPSF7,CYB561A3,DAGLA,DDB1,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MYRF,PGA3,PGA4,PGA5,PPP1R32,PRPF19,RAB3IL1,SCGB1D1,SDHAF2,SLC15A3,SYT7,TKFC,TMEM109,TMEM132A,TMEM138,TMEM216,TMEM258,VPS37C,VWCE"
TCGA.AA.3982	11	62080041	62816079	138	0.555	SMALL-GAIN	NONFOCAL	33	"AHNAK,ASRGL1,B3GAT3,BSCL2,C11orf98,CHRM1,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,NXF1,POLR2G,ROM1,SCGB1A1,SLC22A6,SLC22A8,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AG.3891.01A	11	62158956	62744218	177	0.4374	SMALL-GAIN	NONFOCAL	32	"AHNAK,ASRGL1,B3GAT3,BSCL2,C11orf98,CHRM1,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,NXF1,POLR2G,ROM1,SCGB1A1,SLC22A6,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AG.3605.01A	11	62189645	67169130	81	0.5446	SMALL-GAIN	NONFOCAL	180	Too-Many
TCGA.AA.3861.01A	11	62284199	62432271	88	0.4775	SMALL-GAIN	NONFOCAL	11	"AHNAK,B3GAT3,C11orf98,EEF1G,EML3,GANAB,INTS5,LBHD1,MTA2,ROM1,TUT1"
TCGA.AA.3862.01A	11	62284199	62432271	88	0.6263	SMALL-GAIN	NONFOCAL	11	"AHNAK,B3GAT3,C11orf98,EEF1G,EML3,GANAB,INTS5,LBHD1,MTA2,ROM1,TUT1"
TCGA.AG.A00C.01A	11	62356452	62491726	83	0.4775	SMALL-GAIN	NONFOCAL	16	"B3GAT3,BSCL2,C11orf98,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,ROM1,TUT1,UBXN1,UQCC3"
TCGA.A6.3808.01A	11	62567747	63320389	98	0.6738	SMALL-GAIN	NONFOCAL	15	"CHRM1,HRASLS2,HRASLS5,LGALS12,NXF1,RARRES3,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STX5,WDR74"
TCGA.AA.A004.01A	11	62760682	63411590	68	0.4571	SMALL-GAIN	NONFOCAL	11	"ATL3,HRASLS2,HRASLS5,LGALS12,PLA2G16,RARRES3,SLC22A10,SLC22A24,SLC22A25,SLC22A8,SLC22A9"
TCGA.AA.A00Z.01A	11	63069753	67169130	68	0.6224	SMALL-GAIN	NONFOCAL	146	Too-Many
TCGA.AA.3982	11	63231258	76957832	2926	0.4854	SMALL-GAIN	NONFOCAL	267	Too-Many
TCGA.AA.3850	11	63231375	71523317	1644	0.40575	SMALL-GAIN	NONFOCAL	198	Too-Many
TCGA.AG.3891.01A	11	63413946	64032374	106	0.5582	SMALL-GAIN	NONFOCAL	20	"ATL3,C11orf84,C11orf95,COX8A,DNAJC4,FERMT3,FKBP2,FLRT1,MACROD1,MARK2,NAA40,NUDT22,OTUB1,PLCB3,PPP1R14B,RCOR2,RTN3,STIP1,TRPT1,VEGFB"
TCGA.D5.5541	11	63860717	134944769	24002	0.4189	SMALL-GAIN	NONFOCAL	617	Too-Many
TCGA.AA.A02F.01A	11	65987150	66617084	152	0.5738	SMALL-GAIN	NONFOCAL	29	"ACTN3,B4GAT1,BBS1,BRMS1,C11orf80,CCDC87,CCS,CD248,CNIH2,CTSF,DPP3,KLC2,MRPL11,NPAS4,PACS1,PC,PELI3,RAB1B,RBM14,RBM14-RBM4,RBM4,RBM4B,RCE1,RIN1,SLC29A2,SPTBN2,TMEM151A,YIF1A,ZDHHC24"
TCGA.AG.3906.01A	11	66481075	67254430	115	0.5781	SMALL-GAIN	NONFOCAL	25	"ADRBK1,AIP,ANKRD13D,C11orf80,C11orf86,CABP4,CARNS1,CLCF1,CORO1B,GPR152,KDM2A,LRFN4,PC,POLD4,PPP1CA,PTPRCAP,RAD9A,RCE1,RHOD,RPS6KB2,SPTBN2,SSH3,SYT12,TBC1D10C,TMEM134"
TCGA.DC.6158	11	66826159	67842820	116	0.6478	SMALL-GAIN	NONFOCAL	32	"ACY3,ADRBK1,AIP,ALDH3B1,ALDH3B2,ANKRD13D,CABP2,CABP4,CARNS1,CDK2AP2,CHKA,CLCF1,CORO1B,GPR152,GSTP1,KDM2A,NDUFS8,NDUFV1,NUDT8,PITPNM1,POLD4,PPP1CA,PTPRCAP,RAD9A,RHOD,RPS6KB2,SSH3,TBC1D10C,TBX10,TCIRG1,TMEM134,UNC93B1"
TCGA.D5.6898	11	68414037	71053297	804	0.6734	SMALL-GAIN	NONFOCAL	19	"ANO1,CCND1,CPT1A,CTTN,FADD,FGF19,FGF3,FGF4,GAL,IGHMBP2,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,ORAOV1,PPFIA1,SHANK2,TPCN2"
TCGA.A6.5656	11	68681652	70567193	582	0.4785	SMALL-GAIN	NONFOCAL	15	"ANO1,CCND1,CTTN,FADD,FGF19,FGF3,FGF4,IGHMBP2,MRGPRD,MRGPRF,MYEOV,ORAOV1,PPFIA1,SHANK2,TPCN2"
TCGA.AG.4009.01A	11	70178027	71929590	132	0.3854	SMALL-GAIN	NONFOCAL	23	"ANAPC15,CTTN,DEFB108B,DHCR7,FAM86C1,FOLR1,FOLR2,FOLR3,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRTOMT,NADSYN1,NUMA1,PPFIA1,RNF121,SHANK2,ZNF705E"
TCGA.A6.3808.01A	11	73076746	76871997	367	0.4602	SMALL-GAIN	NONFOCAL	46	"ACER3,ARHGEF17,ARRB1,B3GNT6,C11orf30,C2CD3,CAPN5,CHRDL2,COA4,DGAT2,DNAJB13,FAM168A,GDPD5,KCNE3,KLHL35,LIPT2,LOC100506127,LRRC32,MAP6,MOGAT2,MRPL48,MYO7A,NEU3,OMP,OR2AT4,P4HA3,PAAF1,PGM2L1,PLEKHB1,POLD3,PPME1,PRKRIR,RAB6A,RELT,RNF169,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,TSKU,UCP2,UCP3,UVRAG,WNT11,XRRA1"
TCGA.AA.3968	11	74569938	76257214	411	0.4011	SMALL-GAIN	NONFOCAL	19	"ARRB1,C11orf30,DGAT2,GDPD5,KLHL35,LOC100506127,MAP6,MOGAT2,NEU3,OR2AT4,PRKRIR,RPS3,SERPINH1,SLCO2B1,SPCS2,TPBGL,UVRAG,WNT11,XRRA1"
TCGA.DT.5265	11	75908249	80476413	1633	0.4481	SMALL-GAIN	NONFOCAL	28	"AAMDC,ACER3,ALG8,AQP11,B3GNT6,C11orf30,CAPN5,CLNS1A,GAB2,GDPD4,INTS4,KCTD14,KCTD21,LOC100506127,LRRC32,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,OMP,PAK1,PRKRIR,RSF1,TENM4,THRSP,TSKU,USP35,WNT11"
TCGA.AA.3968	11	76518599	79445219	987	0.3834	SMALL-GAIN	NONFOCAL	22	"AAMDC,ACER3,ALG8,AQP11,B3GNT6,CAPN5,CLNS1A,GAB2,GDPD4,INTS4,KCTD14,KCTD21,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,OMP,PAK1,RSF1,TENM4,THRSP,USP35"
TCGA.AA.3982	11	77171648	78185196	208	0.4616	SMALL-GAIN	NONFOCAL	15	"AAMDC,ALG8,AQP11,CLNS1A,GAB2,INTS4,KCTD14,KCTD21,NARS2,NDUFC2,NDUFC2-KCTD14,PAK1,RSF1,THRSP,USP35"
TCGA.A6.3808.01A	11	77838377	82872331	91	0.4781	SMALL-GAIN	NONFOCAL	11	"ALG8,DDIAS,FAM181B,GAB2,KCTD21,NARS2,PCF11,PRCP,RAB30,TENM4,USP35"
TCGA.A6.A56B	11	77855253	87677068	3624	0.6017	SMALL-GAIN	NONFOCAL	27	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,DDIAS,DLG2,EED,FAM181B,FZD4,GAB2,KCTD21,ME3,NARS2,PCF11,PICALM,PRCP,PRSS23,RAB30,SYTL2,TENM4,TMEM126A,TMEM126B,TMEM135,USP35"
TCGA.CM.6675	11	78409840	118887944	14269	0.5619	SMALL-GAIN	NONFOCAL	217	Too-Many
TCGA.AZ.4684.01A	11	78525297	88300174	244	0.4041	SMALL-GAIN	NONFOCAL	26	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,CTSC,DDIAS,DLG2,EED,FAM181B,FZD4,GRM5,ME3,PCF11,PICALM,PRCP,PRSS23,RAB30,RAB38,SYTL2,TENM4,TMEM126A,TMEM126B,TMEM135"
TCGA.AG.A01Y	11	81524660	87197323	1843	0.4941	SMALL-GAIN	NONFOCAL	22	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,DDIAS,DLG2,EED,FAM181B,FZD4,ME3,PCF11,PICALM,PRCP,PRSS23,RAB30,SYTL2,TMEM126A,TMEM126B,TMEM135"
TCGA.DT.5265	11	82827005	86371962	1083	0.4698	SMALL-GAIN	NONFOCAL	15	"ANKRD42,C11orf73,CCDC81,CCDC83,CCDC89,CCDC90B,CREBZF,DLG2,EED,ME3,PCF11,PICALM,SYTL2,TMEM126A,TMEM126B"
TCGA.T9.A92H	11	85236331	134925450	18180	0.4367	SMALL-GAIN	NONFOCAL	341	Too-Many
TCGA.AA.3861.01A	11	88061226	93470183	171	0.5724	SMALL-GAIN	NONFOCAL	22	"CCDC67,CEP295,CHORDC1,CTSC,FAT3,FOLH1B,GRM5,MTNR1B,NAALAD2,NOX4,SLC36A4,SMCO4,TAF1D,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AA.3862.01A	11	88386286	93470183	165	0.6093	SMALL-GAIN	NONFOCAL	21	"CCDC67,CEP295,CHORDC1,FAT3,FOLH1B,GRM5,MTNR1B,NAALAD2,NOX4,SLC36A4,SMCO4,TAF1D,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AG.A01Y	11	93424643	106325092	4594	0.4949	SMALL-GAIN	NONFOCAL	63	"AASDHPPT,AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,BIRC2,BIRC3,C11orf54,C11orf70,C11orf97,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC82,CEP126,CEP295,CEP57,CNTN5,CWC15,DCUN1D5,DDI1,DYNC2H1,ENDOD1,FAM76B,FUT4,GPR83,GRIA4,HEPHL1,IZUMO1R,JRKL,KBTBD3,KDM4D,KDM4E,MAML2,MED17,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MSANTD4,MTMR2,PANX1,PDGFD,PGR,PIWIL4,SESN3,SRSF8,TAF1D,TMEM123,TMEM133,TRPC6,VSTM5,YAP1"
TCGA.A6.3808.01A	11	93554115	103013974	380	0.438	SMALL-GAIN	NONFOCAL	46	"AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,BIRC2,BIRC3,C11orf70,C11orf97,CCDC82,CEP126,CEP57,CNTN5,CWC15,DCUN1D5,DYNC2H1,ENDOD1,FAM76B,FUT4,GPR83,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MTMR2,PANX1,PGR,PIWIL4,SESN3,SRSF8,TMEM123,TMEM133,TRPC6,VSTM5,YAP1"
TCGA.AA.3509.01A	11	94180387	107502258	514	0.4504	SMALL-GAIN	NONFOCAL	58	"AASDHPPT,ALKBH8,AMOTL1,ANGPTL5,ANKRD49,ARHGAP42,BIRC2,BIRC3,C11orf70,C11orf97,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CCDC82,CEP126,CEP57,CNTN5,CWC15,CWF19L2,DCUN1D5,DDI1,DYNC2H1,ELMOD1,ENDOD1,FAM76B,FUT4,GRIA4,GUCY1A2,JRKL,KBTBD3,KDM4D,KDM4E,MAML2,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,MRE11A,MSANTD4,MTMR2,PDGFD,PGR,PIWIL4,SESN3,SRSF8,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AZ.4684.01A	11	101849041	103022848	143	0.4321	SMALL-GAIN	NONFOCAL	17	"BIRC2,BIRC3,C11orf70,CEP126,DCUN1D5,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,TMEM123,YAP1"
TCGA.AZ.4684.01A	11	103036610	107502258	162	0.6764	SMALL-GAIN	NONFOCAL	18	"AASDHPPT,ALKBH8,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CWF19L2,DDI1,DYNC2H1,ELMOD1,GRIA4,GUCY1A2,KBTBD3,MSANTD4,PDGFD"
TCGA.AA.A010.01A	11	111680326	112064564	94	0.4544	SMALL-GAIN	NONFOCAL	15	"ALG9,BCO2,C11orf1,C11orf52,C11orf57,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2,IL18,PIH1D2,SDHD,TEX12,TIMM8B"
TCGA.AA.3982	11	116174877	117754523	657	0.4378	SMALL-GAIN	NONFOCAL	18	"APOA1,APOA4,APOA5,APOC3,BACE1,BUD13,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,PAFAH1B2,PCSK7,RNF214,SIDT2,SIK3,TAGLN,ZPR1"
TCGA.AA.A00N.01A	11	117152005	118366929	209	0.3867	SMALL-GAIN	NONFOCAL	21	"AMICA1,ATP5L,BACE1,CD3D,CD3E,CD3G,CEP164,DSCAML1,FXYD2,FXYD6,FXYD6-FXYD2,IL10RA,KMT2A,MPZL2,MPZL3,RNF214,SCN2B,SCN4B,TMPRSS13,TMPRSS4,UBE4A"
TCGA.CK.5914.01A	11	117693053	118175595	72	0.6514	SMALL-GAIN	NONFOCAL	12	"AMICA1,CD3E,FXYD2,FXYD6,FXYD6-FXYD2,IL10RA,MPZL2,MPZL3,SCN2B,SCN4B,TMPRSS13,TMPRSS4"
TCGA.AA.3982	11	117769467	120013983	758	0.4765	SMALL-GAIN	NONFOCAL	49	"ABCG4,AMICA1,ARCN1,ATP5L,BCL9L,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CD3D,CD3E,CD3G,CXCR5,DDX6,DPAGT1,FOXR1,H2AFX,HINFP,HMBS,HYOU1,IFT46,IL10RA,KMT2A,MCAM,MFRP,MPZL2,MPZL3,NLRX1,PDZD3,PHLDB1,PVRL1,RNF26,RPS25,SCN2B,SCN4B,SLC37A4,THY1,TMEM25,TMPRSS13,TMPRSS4,TRAPPC4,TREH,TRIM29,TTC36,UBE4A,UPK2,USP2,VPS11"
TCGA.A6.3808.01A	11	119290794	122735289	205	0.4739	SMALL-GAIN	NONFOCAL	15	"ARHGEF12,BLID,CRTAM,GRIK4,OAF,POU2F3,PVRL1,SC5D,SORL1,TBCEL,TECTA,THY1,TMEM136,TRIM29,UBASH3B"
TCGA.EI.6510	11	121767441	134944769	5386	0.3891	SMALL-GAIN	NONFOCAL	101	Too-Many
TCGA.AA.3544	11	121842525	134944769	5366	0.391	SMALL-GAIN	NONFOCAL	101	Too-Many
TCGA.AG.3909.01A	11	123676109	124496752	47	0.4037	SMALL-GAIN	NONFOCAL	24	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,TBRG1,TMEM225,VWA5A"
TCGA.AA.A00N.01A	11	124016535	124543473	37	0.5267	SMALL-GAIN	NONFOCAL	15	"OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8G1,OR8G2,OR8G5,PANX3,SIAE,TBRG1,VWA5A"
TCGA.G4.6625	11	129832269	134944769	2244	0.3813	SMALL-GAIN	NONFOCAL	20	"ACAD8,ADAMTS15,ADAMTS8,APLP2,B3GAT1,C11orf44,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,THYN1,VPS26B,ZBTB44"
TCGA.AA.3844	12	192219	1886224	490	0.5738	SMALL-GAIN	NONFOCAL	13	"ADIPOR2,B4GALNT3,CCDC77,ERC1,FBXL14,IQSEC3,KDM5A,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.CM.6166	12	192219	1947192	515	0.3889	SMALL-GAIN	NONFOCAL	15	"ADIPOR2,B4GALNT3,CACNA2D4,CCDC77,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AF.2693	12	192219	2511310	752	0.3979	SMALL-GAIN	NONFOCAL	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.F4.6809	12	192219	2949238	915	0.4092	SMALL-GAIN	NONFOCAL	20	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,FKBP4,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AA.3524	12	192219	4433638	1556	0.4286	SMALL-GAIN	NONFOCAL	30	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,PARP11,PRMT8,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AA.A02Y	12	192219	4560027	1612	0.4666	SMALL-GAIN	NONFOCAL	32	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,IQSEC3,ITFG2,KDM5A,LRTM2,NINJ2,NRIP2,PARP11,PRMT8,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.CM.5349	12	192219	5194548	1936	0.6425	SMALL-GAIN	NONFOCAL	41	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AA.3941	12	192219	5212926	1945	0.5324	SMALL-GAIN	NONFOCAL	41	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.AA.3715	12	192219	6455097	2588	0.5038	SMALL-GAIN	NONFOCAL	47	"ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD9,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LRTM2,NDUFA9,NINJ2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SLC6A12,SLC6A13,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VWF,WNK1,WNT5B"
TCGA.CM.6172	12	192219	7694016	2836	0.3847	SMALL-GAIN	NONFOCAL	92	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.F4.6805	12	192219	8044830	2914	0.6154	SMALL-GAIN	NONFOCAL	99	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,APOBEC1,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4C,CLSTN3,COPS7A,CRACR2A,DCP1B,DPPA3,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC2A14,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.CK.5913	12	192219	12033535	4108	0.3877	SMALL-GAIN	NONFOCAL	168	Too-Many
TCGA.AG.3574	12	192219	12509313	4279	0.5078	SMALL-GAIN	NONFOCAL	171	Too-Many
TCGA.DM.A0XD	12	192219	15753600	5508	0.4271	SMALL-GAIN	NONFOCAL	200	Too-Many
TCGA.CL.5917	12	192219	19173506	6472	0.6295	SMALL-GAIN	NONFOCAL	210	Too-Many
TCGA.AG.3726	12	192219	27115946	9369	0.406	SMALL-GAIN	NONFOCAL	245	Too-Many
TCGA.AG.3887	12	192219	31906671	11200	0.3988	SMALL-GAIN	NONFOCAL	270	Too-Many
TCGA.AF.6672	12	192219	32324147	11404	0.4479	SMALL-GAIN	NONFOCAL	273	Too-Many
TCGA.AA.3680	12	192219	33302437	11782	0.4145	SMALL-GAIN	NONFOCAL	277	Too-Many
TCGA.G5.6233	12	192219	34343751	12036	0.4787	SMALL-GAIN	NONFOCAL	279	Too-Many
TCGA.D5.6537	12	192219	34363278	11963	0.4607	SMALL-GAIN	NONFOCAL	279	Too-Many
TCGA.D5.6529	12	192219	34835836	12071	0.5306	SMALL-GAIN	NONFOCAL	279	Too-Many
TCGA.AA.3685	12	192219	38353815	12093	0.4758	SMALL-GAIN	NONFOCAL	279	Too-Many
TCGA.F4.6459	12	192219	52219336	15793	0.5796	SMALL-GAIN	NONFOCAL	392	Too-Many
TCGA.AA.3696	12	192219	54976111	16698	0.4625	SMALL-GAIN	NONFOCAL	472	Too-Many
TCGA.DM.A1DB	12	192219	63238452	18873	0.4305	SMALL-GAIN	NONFOCAL	587	Too-Many
TCGA.AZ.6607	12	192219	75171558	22637	0.4158	SMALL-GAIN	NONFOCAL	642	Too-Many
TCGA.AG.3594	12	192219	111912583	33990	0.4189	SMALL-GAIN	NONFOCAL	829	Too-Many
TCGA.A6.6780	12	192219	124440109	37729	0.4103	SMALL-GAIN	NONFOCAL	957	Too-Many
TCGA.AA.3534	12	192219	133777644	41750	0.4593	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.AA.3818	12	192219	133777644	41770	0.4568	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.AA.3984	12	192219	133777644	41700	0.4293	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.AA.A022	12	192219	133777644	41697	0.4173	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.AA.A02O	12	192219	133777644	41746	0.4832	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.AG.A02N	12	192219	133777644	41716	0.4255	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.AZ.6598	12	192219	133777644	41763	0.492	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.CM.6171	12	192219	133777644	41745	0.4499	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.DM.A0X9	12	192219	133777644	41744	0.4362	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.DY.A1H8	12	192219	133777644	41763	0.4837	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.G4.6306	12	192219	133777644	41749	0.3958	SMALL-GAIN	NONFOCAL	1001	Too-Many
TCGA.AA.3939.01A	12	247392	6748061	667	0.4492	SMALL-GAIN	NONFOCAL	60	"ACRBP,ADIPOR2,AKAP3,ANO2,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD9,CHD4,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,IFFO1,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LPAR5,LRTM2,LTBR,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,PARP11,PLEKHG6,PRMT8,RAD51AP1,RAD52,RHNO1,SCNN1A,SLC6A12,SLC6A13,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TSPAN9,TULP3,VAMP1,VWF,WNK1,WNT5B"
TCGA.AA.A00F.01A	12	247392	7362292	693	0.4351	SMALL-GAIN	NONFOCAL	89	"ACRBP,ADIPOR2,AKAP3,ANO2,ATN1,B4GALNT3,C12orf4,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCDC77,CCND2,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,CRACR2A,DCP1B,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,IQSEC3,ITFG2,KCNA1,KCNA5,KCNA6,KDM5A,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NINJ2,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,SCNN1A,SLC6A12,SLC6A13,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384"
TCGA.AG.3611.01A	12	549731	4919171	279	0.6096	SMALL-GAIN	NONFOCAL	35	"ADIPOR2,AKAP3,B4GALNT3,C12orf4,CACNA1C,CACNA2D4,CCDC77,CCND2,CRACR2A,DCP1B,DYRK4,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,ITFG2,KCNA6,LRTM2,NDUFA9,NINJ2,NRIP2,PARP11,PRMT8,RAD51AP1,RAD52,RHNO1,TEAD4,TIGAR,TSPAN9,TULP3,WNK1,WNT5B"
TCGA.A6.3807	12	1440843	3083669	586	0.6717	SMALL-GAIN	NONFOCAL	15	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,FKBP4,FOXM1,ITFG2,LRTM2,NRIP2,RHNO1,TEAD4,TULP3,WNT5B"
TCGA.D5.6539	12	1604650	8212374	2550	0.4692	SMALL-GAIN	NONFOCAL	93	"ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,APOBEC1,ATN1,C12orf4,C12orf57,C1R,C1RL,C1S,C3AR1,CACNA1C,CACNA2D4,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4C,CLSTN3,COPS7A,CRACR2A,DCP1B,DPPA3,DYRK4,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXJ2,FOXM1,GALNT8,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,ITFG2,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NDUFA9,NOP2,NRIP2,NTF3,P3H3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RBP5,RHNO1,SCNN1A,SLC2A14,SLC2A3,SPSB2,TAPBPL,TEAD4,TIGAR,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNT5B,ZNF384"
TCGA.AA.3844	12	1893169	4757473	1189	0.5774	SMALL-GAIN	NONFOCAL	24	"ADIPOR2,AKAP3,C12orf4,CACNA1C,CACNA2D4,CCND2,CRACR2A,DCP1B,DYRK4,FGF23,FGF6,FKBP4,FOXM1,ITFG2,LRTM2,NRIP2,PARP11,PRMT8,RAD51AP1,RHNO1,TEAD4,TIGAR,TSPAN9,TULP3"
TCGA.AA.A010.01A	12	4458947	6204575	147	0.5045	SMALL-GAIN	NONFOCAL	15	"AKAP3,ANO2,C12orf4,DYRK4,FGF23,FGF6,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,RAD51AP1,TIGAR,VWF"
TCGA.AA.A02Y	12	4564612	133777644	40114	0.4714	SMALL-GAIN	NONFOCAL	969	Too-Many
TCGA.AG.3881	12	4733055	7065575	1048	0.6039	SMALL-GAIN	NONFOCAL	45	"ACRBP,AKAP3,ANO2,ATN1,C12orf57,CD27,CD4,CD9,CDCA3,CHD4,COPS7A,ENO2,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LRRC23,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NOP2,NTF3,P3H3,PIANP,PLEKHG6,PTMS,PTPN6,SCNN1A,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384"
TCGA.AG.3611.01A	12	6134699	6861039	192	0.519	SMALL-GAIN	NONFOCAL	22	"ACRBP,CD27,CD9,CHD4,COPS7A,GAPDH,IFFO1,ING4,LPAR5,LTBR,MLF2,MRPL51,NCAPD2,NOP2,PIANP,PLEKHG6,SCNN1A,TAPBPL,TNFRSF1A,VAMP1,VWF,ZNF384"
TCGA.AA.A00K.01A	12	6700621	7125527	148	0.6694	SMALL-GAIN	NONFOCAL	26	"ACRBP,ATN1,C12orf57,CD4,CDCA3,CHD4,COPS7A,EMG1,ENO2,GNB3,GPR162,ING4,LAG3,LPAR5,LPCAT3,LRRC23,MLF2,P3H3,PHB2,PIANP,PTMS,PTPN6,SPSB2,TPI1,USP5,ZNF384"
TCGA.AA.3715	12	6754190	33071289	9038	0.4956	SMALL-GAIN	NONFOCAL	218	Too-Many
TCGA.CM.5862	12	6801128	7120395	78	0.3911	SMALL-GAIN	NONFOCAL	21	"ATN1,C12orf57,CD4,CDCA3,COPS7A,EMG1,ENO2,GNB3,GPR162,LAG3,LPCAT3,LRRC23,MLF2,P3H3,PHB2,PIANP,PTMS,PTPN6,SPSB2,TPI1,USP5"
TCGA.AG.3611.01A	12	6909233	7310529	120	0.4909	SMALL-GAIN	NONFOCAL	21	"ATN1,C12orf57,C1R,C1RL,C1S,CD4,CDCA3,CLSTN3,EMG1,ENO2,GNB3,GPR162,LPCAT3,LRRC23,P3H3,PHB2,PTPN6,RBP5,SPSB2,TPI1,USP5"
TCGA.AA.3524	12	6942671	8357506	294	0.4729	SMALL-GAIN	NONFOCAL	36	"ACSM4,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,C3AR1,CD163,CD163L1,CDCA3,CLEC4A,CLEC4C,CLSTN3,DPPA3,EMG1,ENO2,FOXJ2,GDF3,GNB3,LPCAT3,LRRC23,NANOG,NANOGNB,NECAP1,P3H3,PEX5,PHB2,PTPN6,RBP5,SLC2A14,SLC2A3,SPSB2,TPI1,USP5,ZNF705A"
TCGA.AA.3939.01A	12	6975095	7470575	129	0.4777	SMALL-GAIN	NONFOCAL	18	"ACSM4,ATN1,C12orf57,C1R,C1RL,C1S,CLSTN3,EMG1,ENO2,LPCAT3,LRRC23,PEX5,PHB2,PTPN6,RBP5,SPSB2,TPI1,USP5"
TCGA.AG.3611.01A	12	7476840	10277847	254	0.5479	SMALL-GAIN	NONFOCAL	43	"A2M,A2ML1,ACSM4,AICDA,APOBEC1,C3AR1,CD163,CD163L1,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,DPPA3,FAM90A1,FOXJ2,GDF3,KLRB1,KLRF1,KLRF2,KLRG1,M6PR,MFAP5,NANOG,NANOGNB,NECAP1,PHC1,PZP,RIMKLB,SLC2A14,SLC2A3,ZNF705A"
TCGA.AA.3939.01A	12	7647640	14018741	571	0.4335	SMALL-GAIN	NONFOCAL	94	"A2M,A2ML1,AICDA,APOBEC1,APOLD1,BCL2L14,C3AR1,CD163,CD69,CDKN1B,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,CREBL2,DDX47,DPPA3,DUSP16,EMP1,ETV6,FAM90A1,FOXJ2,GABARAPL1,GDF3,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,HEBP1,KIAA1467,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,LOH12CR1,LRP6,M6PR,MAGOHB,MANSC1,MFAP5,NANOG,NANOGNB,NECAP1,OLR1,PHC1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PZP,RIMKLB,SLC2A14,SLC2A3,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3,ZNF705A"
TCGA.AA.3844	12	7798835	8619561	160	0.6363	SMALL-GAIN	NONFOCAL	15	"APOBEC1,C3AR1,CLEC4A,CLEC4C,CLEC6A,DPPA3,FAM90A1,FOXJ2,GDF3,NANOG,NANOGNB,NECAP1,SLC2A14,SLC2A3,ZNF705A"
TCGA.A6.3808.01A	12	8086375	9360798	195	0.5247	SMALL-GAIN	NONFOCAL	19	"A2M,A2ML1,AICDA,C3AR1,CLEC4A,CLEC4D,CLEC4E,CLEC6A,FAM90A1,FOXJ2,KLRG1,M6PR,MFAP5,NECAP1,PHC1,PZP,RIMKLB,SLC2A3,ZNF705A"
TCGA.G5.6641	12	8872491	12561483	1206	0.4026	SMALL-GAIN	NONFOCAL	61	"A2M,A2ML1,BCL2L14,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,ETV6,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,LOH12CR1,LRP6,M6PR,MAGOHB,MANSC1,OLR1,PHC1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PZP,RIMKLB,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.AZ.4684.01A	12	9070264	10760396	233	0.4359	SMALL-GAIN	NONFOCAL	30	"A2M,CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,M6PR,MAGOHB,OLR1,PHC1,PZP,TMEM52B"
TCGA.A6.3808.01A	12	9747818	10561961	100	0.58	SMALL-GAIN	NONFOCAL	21	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,OLR1,TMEM52B"
TCGA.AA.A029.01A	12	9747818	21668536	660	0.4342	SMALL-GAIN	NONFOCAL	104	Too-Many
TCGA.AG.3611.01A	12	10332111	15370322	313	0.5404	SMALL-GAIN	NONFOCAL	66	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,ERP27,ETV6,GABARAPL1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRK1,LOH12CR1,LRP6,MAGOHB,MANSC1,MGP,PDE6H,PLBD1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,RERG,SMCO3,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,WBP11,YBX3"
TCGA.CK.4952.01A	12	10478287	15939518	353	0.4859	SMALL-GAIN	NONFOCAL	65	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRK1,LOH12CR1,LRP6,MAGOHB,MANSC1,MGP,PDE6H,PLBD1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,RERG,SMCO3,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,WBP11,YBX3"
TCGA.A6.3808.01A	12	10602438	18890203	403	0.6226	SMALL-GAIN	NONFOCAL	68	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRC1,LMO3,LOH12CR1,LRP6,MAGOHB,MANSC1,MGP,MGST1,PDE6H,PIK3C2G,PLBD1,PLCZ1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,RERG,RERGL,SLC15A5,SMCO3,SMIM10L1,STRAP,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,WBP11,YBX3"
TCGA.CK.5914.01A	12	10875402	11338547	27	0.4383	SMALL-GAIN	NONFOCAL	18	"PRH1,PRH2,PRR4,SMIM10L1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,YBX3"
TCGA.AG.3909.01A	12	10958918	12240110	53	0.4851	SMALL-GAIN	NONFOCAL	23	"BCL2L14,ETV6,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R8,TAS2R9"
TCGA.AG.3881	12	11553367	19758871	2768	0.3827	SMALL-GAIN	NONFOCAL	45	"AEBP2,APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CAPZA3,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LMO3,LOH12CR1,LRP6,MANSC1,MGP,MGST1,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PTPRO,RERG,RERGL,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AA.3844	12	11564510	13635890	892	0.5242	SMALL-GAIN	NONFOCAL	17	"APOLD1,BCL2L14,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,ETV6,GPR19,GPRC5A,GPRC5D,GSG1,HEBP1,KIAA1467,LOH12CR1,LRP6,MANSC1"
TCGA.AG.A02G.01A	12	13221196	44193154	1257	0.3988	SMALL-GAIN	NONFOCAL	117	Too-Many
TCGA.AA.3524	12	13541423	15297056	679	0.4593	SMALL-GAIN	NONFOCAL	15	"ARHGDIB,ART4,ATF7IP,C12orf60,ERP27,GRIN2B,GUCY2C,H2AFJ,HIST4H4,MGP,PDE6H,PLBD1,RERG,SMCO3,WBP11"
TCGA.AG.3574	12	13876849	88483998	21396	0.5114	SMALL-GAIN	NONFOCAL	495	Too-Many
TCGA.AA.3939.01A	12	14610084	21422432	315	0.4023	SMALL-GAIN	NONFOCAL	33	"AEBP2,ARHGDIB,ART4,ATF7IP,C12orf60,CAPZA3,DERA,EPS8,ERP27,GUCY2C,H2AFJ,HIST4H4,LMO3,MGP,MGST1,PDE3A,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PTPRO,RERG,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO3,STRAP,WBP11"
TCGA.AG.3611.01A	12	15661455	34178761	694	0.5664	SMALL-GAIN	NONFOCAL	80	"ABCC9,AEBP2,ALG10,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,DDX11,DENND5B,DERA,DNM1L,EPS8,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IPO8,ITPR2,KCNJ8,KIAA1551,KLHL42,KRAS,LDHB,LMNTD1,LMO3,LRMP,LYRM5,MANSC4,MED21,METTL20,MGST1,MRPS35,OVCH1,PDE3A,PIK3C2G,PKP2,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PTPRO,PYROXD1,RASSF8,RECQL,REP15,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,STRAP,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.DM.A0XD	12	15812003	133777644	36092	0.4183	SMALL-GAIN	NONFOCAL	801	Too-Many
TCGA.AA.3660	12	18236174	24447447	2054	0.4999	SMALL-GAIN	NONFOCAL	26	"ABCC9,AEBP2,C2CD5,CAPZA3,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PIK3C2G,PLCZ1,PLEKHA5,PYROXD1,RECQL,RERGL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,ST8SIA1"
TCGA.A6.3808.01A	12	21427353	31131434	523	0.6332	SMALL-GAIN	NONFOCAL	48	"ABCC9,ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,ERGIC2,ETNK1,FAR2,FGFR1OP2,GOLT1B,GYS2,IAPP,IPO8,ITPR2,KCNJ8,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLCO1A2,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.AA.3939.01A	12	21457310	40936308	879	0.4373	SMALL-GAIN	NONFOCAL	70	"ABCC9,ABCD2,ALG10,ALG10B,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf40,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,CPNE8,DDX11,DENND5B,DNM1L,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IPO8,ITPR2,KCNJ8,KIAA1551,KIF21A,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LRRK2,LYRM5,MANSC4,MED21,METTL20,MRPS35,MUC19,OVCH1,PKP2,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,SLC2A13,SLCO1A2,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,SYT10,TM7SF3,TMTC1,TSPAN11,YARS2"
TCGA.AA.A029.01A	12	21681877	48543107	1100	0.4194	SMALL-GAIN	NONFOCAL	98	"ABCC9,ABCD2,ADAMTS20,ALG10,ALG10B,AMIGO2,AMN1,ANO6,ARID2,ARNTL2,ASB8,ASUN,BCAT1,BHLHE41,BICD1,C12orf40,C12orf71,C12orf77,C2CD5,CAPRIN2,CASC1,CCDC91,CMAS,CNTN1,COL2A1,CPNE8,DBX2,DDX11,DENND5B,DNM1L,ENDOU,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GXYLT1,GYS2,H3F3C,HDAC7,IPO8,IRAK4,ITPR2,KCNJ8,KIAA1551,KIF21A,KLHL42,KRAS,LDHB,LMNTD1,LRMP,LRRK2,LYRM5,MANSC4,MED21,METTL20,MRPS35,MUC19,NELL2,OVCH1,PCED1B,PDZRN4,PFKM,PKP2,PPFIBP1,PPHLN1,PRICKLE1,PTHLH,PUS7L,RAPGEF3,RASSF8,REP15,RPAP3,SCAF11,SENP1,SLC2A13,SLC38A1,SLC38A2,SLC38A4,SLC48A1,SMCO2,SOX5,SPX,SSPN,ST8SIA1,STK38L,SYT10,TM7SF3,TMEM106C,TMEM117,TMTC1,TSPAN11,TWF1,VDR,YAF2,YARS2,ZCRB1"
TCGA.AG.3881	12	22747966	30459505	3059	0.4813	SMALL-GAIN	NONFOCAL	32	"ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,CASC1,CCDC91,ERGIC2,ETNK1,FAR2,FGFR1OP2,ITPR2,KLHL42,KRAS,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SOX5,SSPN,STK38L,TM7SF3,TMTC1"
TCGA.NH.A50U	12	24373827	28059186	1458	0.6145	SMALL-GAIN	NONFOCAL	25	"ARNTL2,ASUN,BCAT1,BHLHE41,C12orf71,C12orf77,CASC1,FGFR1OP2,ITPR2,KLHL42,KRAS,LMNTD1,LRMP,LYRM5,MANSC4,MED21,MRPS35,PPFIBP1,RASSF8,REP15,SMCO2,SOX5,SSPN,STK38L,TM7SF3"
TCGA.AA.3844	12	26723924	28058065	441	0.4911	SMALL-GAIN	NONFOCAL	14	"ARNTL2,ASUN,C12orf71,FGFR1OP2,ITPR2,KLHL42,MANSC4,MED21,MRPS35,PPFIBP1,REP15,SMCO2,STK38L,TM7SF3"
TCGA.AA.A02H.01A	12	27542982	30805075	132	0.3896	SMALL-GAIN	NONFOCAL	14	"ARNTL2,CCDC91,ERGIC2,FAR2,IPO8,KLHL42,MANSC4,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,SMCO2,TMTC1"
TCGA.DM.A1D7	12	27804711	29849647	775	0.6053	SMALL-GAIN	NONFOCAL	11	"CCDC91,ERGIC2,FAR2,KLHL42,MANSC4,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,TMTC1"
TCGA.G5.6641	12	29916292	33337756	1393	0.4367	SMALL-GAIN	NONFOCAL	16	"AMN1,BICD1,CAPRIN2,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,IPO8,KIAA1551,METTL20,PKP2,TMTC1,TSPAN11,YARS2"
TCGA.AA.3941	12	30730344	33246359	923	0.5417	SMALL-GAIN	NONFOCAL	15	"AMN1,BICD1,CAPRIN2,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,IPO8,KIAA1551,METTL20,PKP2,TSPAN11,YARS2"
TCGA.AA.3844	12	31360933	33266942	685	0.5816	SMALL-GAIN	NONFOCAL	11	"AMN1,BICD1,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,PKP2,YARS2"
TCGA.AA.A010.01A	12	31540490	40037584	176	0.3966	SMALL-GAIN	NONFOCAL	17	"ABCD2,ALG10,ALG10B,AMN1,BICD1,C12orf40,CPNE8,DENND5B,DNM1L,FGD4,H3F3C,KIAA1551,KIF21A,METTL20,PKP2,SYT10,YARS2"
TCGA.A6.3808.01A	12	32786434	40854000	215	0.6375	SMALL-GAIN	NONFOCAL	14	"ABCD2,ALG10,ALG10B,C12orf40,CPNE8,DNM1L,FGD4,KIF21A,LRRK2,MUC19,PKP2,SLC2A13,SYT10,YARS2"
TCGA.AA.3509.01A	12	33532720	46316194	432	0.4517	SMALL-GAIN	NONFOCAL	27	"ABCD2,ADAMTS20,ALG10,ALG10B,ANO6,ARID2,C12orf40,CNTN1,CPNE8,DBX2,GXYLT1,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PDZRN4,PPHLN1,PRICKLE1,PUS7L,SCAF11,SLC2A13,SYT10,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.G4.6299	12	33871869	67291372	8093	0.5798	SMALL-GAIN	NONFOCAL	330	Too-Many
TCGA.CL.5917	12	34306858	59151393	5686	0.4934	SMALL-GAIN	NONFOCAL	302	Too-Many
TCGA.G5.6233	12	34399034	63752961	7054	0.4783	SMALL-GAIN	NONFOCAL	309	Too-Many
TCGA.A6.5662	12	34615718	66763166	7728	0.5432	SMALL-GAIN	NONFOCAL	329	Too-Many
TCGA.D5.6537	12	39439629	133777644	29275	0.4516	SMALL-GAIN	NONFOCAL	720	Too-Many
TCGA.A6.3808.01A	12	40943336	48131322	297	0.5926	SMALL-GAIN	NONFOCAL	26	"ADAMTS20,AMIGO2,ANO6,ARID2,CNTN1,DBX2,ENDOU,GXYLT1,IRAK4,MUC19,NELL2,PCED1B,PDZRN4,PPHLN1,PRICKLE1,PUS7L,RAPGEF3,RPAP3,SCAF11,SLC38A1,SLC38A2,SLC38A4,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.3939.01A	12	40954317	57562875	2218	0.5113	SMALL-GAIN	NONFOCAL	264	Too-Many
TCGA.AA.3844	12	47344790	54976111	2029	0.6217	SMALL-GAIN	NONFOCAL	165	Too-Many
TCGA.AA.3941	12	47426532	55216414	2086	0.5721	SMALL-GAIN	NONFOCAL	167	Too-Many
TCGA.AA.A00K.01A	12	48380548	57350917	1471	0.4404	SMALL-GAIN	NONFOCAL	226	Too-Many
TCGA.AA.A00J.01A	12	48380548	133778682	5320	0.5397	SMALL-GAIN	NONFOCAL	685	Too-Many
TCGA.AG.A015.01A	12	49578753	50794701	206	0.4019	SMALL-GAIN	NONFOCAL	28	"AQP2,AQP5,AQP6,ASIC1,BCDIN3D,C1QL4,CERS5,COX14,DNAJC22,FAIM2,FAM186A,FAM186B,FMNL3,GPD1,KCNH3,LARP4,LIMA1,MCRS1,NCKAP5L,PRPF40B,PRPH,RACGAP1,SMARCD1,SPATS2,TMBIM6,TROAP,TUBA1A,TUBA1C"
TCGA.AD.6963	12	50368739	51878830	301	0.435	SMALL-GAIN	NONFOCAL	26	"AQP6,ASIC1,ATF1,BIN2,CELA1,CERS5,COX14,CSRNP2,DAZAP2,DIP2B,FAM186A,GALNT6,GPD1,HIGD1C,LARP4,LETMD1,LIMA1,METTL7A,POU6F1,RACGAP1,SLC11A2,SLC4A8,SMAGP,SMARCD1,TFCP2,TMPRSS12"
TCGA.CM.6172	12	50979931	57510660	1786	0.6164	SMALL-GAIN	NONFOCAL	175	Too-Many
TCGA.G5.6641	12	55003656	56114768	358	0.5964	SMALL-GAIN	NONFOCAL	24	"BLOC1S1,DCD,ITGA7,LACRT,METTL7B,MUCL1,NEUROD4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,RDH5,TESPA1"
TCGA.AA.A01C.01A	12	55025978	56078803	42	0.3845	SMALL-GAIN	NONFOCAL	22	"DCD,ITGA7,LACRT,METTL7B,MUCL1,NEUROD4,OR10A7,OR10P1,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AA.3696	12	55402622	133777644	24918	0.4543	SMALL-GAIN	NONFOCAL	525	Too-Many
TCGA.AA.3941	12	56011100	58345343	402	0.6591	SMALL-GAIN	NONFOCAL	90	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,AVIL,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CDK4,CNPY2,COQ10A,CS,CTDSP2,CYP27B1,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,METTL7B,MIP,MMP19,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,OR10P1,ORMDL2,OS9,PA2G4,PAN2,PIP4K2C,PMEL,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,TSFM,TSPAN31,WIBG,XRCC6BP1,ZBTB39,ZC3H10"
TCGA.AA.3844	12	56011100	58350630	405	0.677	SMALL-GAIN	NONFOCAL	90	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,AVIL,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CDK4,CNPY2,COQ10A,CS,CTDSP2,CYP27B1,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,METTL7B,MIP,MMP19,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,OR10P1,ORMDL2,OS9,PA2G4,PAN2,PIP4K2C,PMEL,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,TSFM,TSPAN31,WIBG,XRCC6BP1,ZBTB39,ZC3H10"
TCGA.AA.3850	12	56022982	58345343	400	0.43715	SMALL-GAIN	NONFOCAL	90	"AGAP2,ANKRD52,APOF,ARHGAP9,ARHGEF25,ATP5B,AVIL,B4GALNT1,BAZ2A,BLOC1S1,CD63,CDK2,CDK4,CNPY2,COQ10A,CS,CTDSP2,CYP27B1,DCTN2,DDIT3,DGKA,DNAJC14,DTX3,ERBB3,ESYT1,GDF11,GLI1,GLS2,GPR182,HSD17B6,IKZF4,IL23A,INHBC,INHBE,ITGA7,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,METTL7B,MIP,MMP19,MYL6,MYL6B,MYO1A,NAB2,NABP2,NACA,NDUFA4L2,NXPH4,OR10P1,ORMDL2,OS9,PA2G4,PAN2,PIP4K2C,PMEL,PRIM1,PTGES3,R3HDM2,RAB5B,RBMS2,RDH16,RDH5,RNF41,RPL41,RPS26,SARNP,SDR9C7,SHMT2,SLC26A10,SLC39A5,SMARCC2,SPRYD4,STAC3,STAT2,STAT6,SUOX,TAC3,TIMELESS,TMEM194A,TSFM,TSPAN31,WIBG,XRCC6BP1,ZBTB39,ZC3H10"
TCGA.AA.3862.01A	12	56636914	57036254	152	0.5151	SMALL-GAIN	NONFOCAL	15	"ANKRD52,APOF,ATP5B,BAZ2A,CNPY2,COQ10A,CS,GLS2,IL23A,MIP,PAN2,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.AA.A010.01A	12	56693863	56996455	97	0.6677	SMALL-GAIN	NONFOCAL	12	"APOF,BAZ2A,CNPY2,CS,GLS2,IL23A,MIP,PAN2,RBMS2,SPRYD4,STAT2,TIMELESS"
TCGA.AA.3861.01A	12	57107273	57630324	167	0.3867	SMALL-GAIN	NONFOCAL	16	"GPR182,HSD17B6,LRP1,MYO1A,NAB2,NACA,NDUFA4L2,NXPH4,PRIM1,RDH16,SDR9C7,SHMT2,STAT6,TAC3,TMEM194A,ZBTB39"
TCGA.AG.A01W.01A	12	57554163	60390384	22	0.4008	SMALL-GAIN	NONFOCAL	34	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CTDSP2,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,LRIG3,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,NDUFA4L2,NXPH4,OS9,PIP4K2C,R3HDM2,SHMT2,SLC16A7,SLC26A10,STAC3,TSFM,TSPAN31,XRCC6BP1"
TCGA.AA.3939.01A	12	57605223	124825131	4514	0.5122	SMALL-GAIN	NONFOCAL	412	Too-Many
TCGA.AA.A00K.01A	12	57610685	133778682	3704	0.4221	SMALL-GAIN	NONFOCAL	451	Too-Many
TCGA.A6.3808.01A	12	58160612	63954275	133	0.4641	SMALL-GAIN	NONFOCAL	15	"AVIL,AVPR1A,CTDSP2,CYP27B1,DPY19L2,FAM19A2,LRIG3,METTL1,METTL21B,MON2,PPM1H,SLC16A7,TSFM,USP15,XRCC6BP1"
TCGA.AA.A029.01A	12	58197000	108985291	2210	0.4069	SMALL-GAIN	NONFOCAL	211	Too-Many
TCGA.DM.A1DB	12	63895321	69303263	1741	0.4221	SMALL-GAIN	NONFOCAL	31	"C12orf56,C12orf66,CAND1,CPM,DPY19L2,DYRK2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LEMD3,LLPH,LOC100129940,MDM1,MDM2,MSRB3,NUP107,RAP1B,RASSF3,SLC35E3,SRGAP1,TBC1D30,TBK1,TMBIM4,TMEM5,WIF1,XPOT"
TCGA.AA.3509.01A	12	70150138	78574601	320	0.4317	SMALL-GAIN	NONFOCAL	30	"ATXN7L3B,BBS10,CAPS2,CNOT2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KRR1,LGR5,MYRFL,NAP1L1,NAV3,OSBPL8,PHLDA1,PTPRB,PTPRR,RAB21,RAB3IP,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,ZDHHC17,ZFC3H1"
TCGA.AZ.4684.01A	12	70150138	78574601	320	0.4613	SMALL-GAIN	NONFOCAL	30	"ATXN7L3B,BBS10,CAPS2,CNOT2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KRR1,LGR5,MYRFL,NAP1L1,NAV3,OSBPL8,PHLDA1,PTPRB,PTPRR,RAB21,RAB3IP,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,ZDHHC17,ZFC3H1"
TCGA.CL.5917	12	76466229	91543667	3956	0.401	SMALL-GAIN	NONFOCAL	42	"ACSS3,ALX1,ATP2B1,BBS10,C12orf29,C12orf50,CCDC59,CCER1,CEP290,CSRP2,DCN,DUSP6,E2F7,EPYC,GALNT4,KERA,KITLG,LIN7A,LRRIQ1,LUM,METTL25,MGAT4C,MYF5,MYF6,NAP1L1,NAV3,NTS,OSBPL8,OTOGL,PAWR,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SYT1,TMTC2,TMTC3,TSPAN19,ZDHHC17"
TCGA.AZ.4684.01A	12	88481540	93213033	128	0.5501	SMALL-GAIN	NONFOCAL	20	"ATP2B1,BTG1,C12orf74,C12orf79,CCER1,CEP290,CLLU1,CLLU1OS,DCN,DUSP6,EEA1,EPYC,GALNT4,KERA,KITLG,LUM,PLEKHG7,POC1B,POC1B-GALNT4,TMTC3"
TCGA.AA.3509.01A	12	88481540	93247644	136	0.4673	SMALL-GAIN	NONFOCAL	20	"ATP2B1,BTG1,C12orf74,C12orf79,CCER1,CEP290,CLLU1,CLLU1OS,DCN,DUSP6,EEA1,EPYC,GALNT4,KERA,KITLG,LUM,PLEKHG7,POC1B,POC1B-GALNT4,TMTC3"
TCGA.AA.A00N.01A	12	89919564	95434202	162	0.5088	SMALL-GAIN	NONFOCAL	25	"ATP2B1,BTG1,C12orf74,C12orf79,CCER1,CEP83,CLLU1,CLLU1OS,CRADD,DCN,EEA1,EPYC,KERA,LUM,MRPL42,NDUFA12,NR2C1,NUDT4,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,SOCS2,TMCC3,UBE2N"
TCGA.AA.3844	12	92339633	96944641	1708	0.466	SMALL-GAIN	NONFOCAL	30	"AMDHD1,BTG1,C12orf74,C12orf79,CCDC38,CDK17,CEP83,CFAP54,CLLU1,CLLU1OS,CRADD,EEA1,ELK3,FGD6,HAL,LTA4H,METAP2,MRPL42,NDUFA12,NR2C1,NTN4,NUDT4,PLEKHG7,PLXNC1,SNRPF,SOCS2,TMCC3,UBE2N,USP44,VEZT"
TCGA.A6.3808.01A	12	93247644	98909619	266	0.3858	SMALL-GAIN	NONFOCAL	26	"AMDHD1,CCDC38,CDK17,CEP83,CFAP54,CRADD,EEA1,ELK3,FGD6,HAL,LTA4H,METAP2,MRPL42,NDUFA12,NEDD1,NR2C1,NTN4,NUDT4,PLXNC1,SNRPF,SOCS2,TMCC3,TMPO,UBE2N,USP44,VEZT"
TCGA.AG.3574	12	93861600	121641508	9554	0.5166	SMALL-GAIN	NONFOCAL	206	Too-Many
TCGA.AA.3941	12	94887746	96944641	797	0.5368	SMALL-GAIN	NONFOCAL	16	"AMDHD1,CCDC38,CDK17,CFAP54,ELK3,FGD6,HAL,LTA4H,METAP2,NDUFA12,NR2C1,NTN4,SNRPF,TMCC3,USP44,VEZT"
TCGA.AZ.6607	12	97534339	120474365	7834	0.401	SMALL-GAIN	NONFOCAL	160	Too-Many
TCGA.A6.3808.01A	12	99064719	104325267	446	0.4572	SMALL-GAIN	NONFOCAL	31	"ACTR6,ANKS1B,ANO4,APAF1,ARL1,ASCL1,C12orf42,CCDC53,CHPT1,DEPDC4,DRAM1,FAM71C,GAS2L3,GNPTAB,HSP90B1,IGF1,MYBPC1,NR1H4,NT5DC3,NUP37,PAH,PARPBP,PMCH,SCYL2,SLC17A8,SLC5A8,SPIC,STAB2,SYCP3,UHRF1BP1L,UTP20"
TCGA.CK.4952.01A	12	99247069	132288755	3103	0.4539	SMALL-GAIN	NONFOCAL	252	Too-Many
TCGA.A6.3808.01A	12	104379354	109971216	486	0.4007	SMALL-GAIN	NONFOCAL	45	"ACACB,ALDH1L2,ALKBH2,APPL2,ASCL4,BTBD11,C12orf45,C12orf75,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,DAO,EID3,FICD,FOXN4,GLT8D2,HCFC2,ISCU,KCTD10,KIAA1033,MTERF2,MYO1H,NFYB,NUAK1,POLR3B,PRDM4,PWP1,RFX4,RIC8B,SART3,SELPLG,SLC41A2,SSH1,SVOP,TCP11L2,TDG,TMEM119,TMEM263,TXNRD1,UBE3B,UNG,USP30,WSCD2"
TCGA.AA.3844	12	104591931	115716843	3660	0.4847	SMALL-GAIN	NONFOCAL	98	"ACACB,ACAD10,ALDH1L2,ALDH2,ALKBH2,ANAPC7,ANKRD13A,APPL2,ARPC3,ASCL4,ATP2A2,ATXN2,BRAP,BTBD11,C12orf45,C12orf75,C12orf76,CCDC42B,CCDC63,CHST11,CKAP4,CMKLR1,CORO1C,CRY1,CUX2,DAO,DDX54,DTX1,EID3,ERP29,FAM109A,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,IQCD,ISCU,KCTD10,KIAA1033,LHX5,MAPKAPK5,MMAB,MTERF2,MVK,MYL2,MYO1H,NAA25,NUAK1,OAS1,OAS2,OAS3,PLBD2,POLR3B,PPP1CC,PPTC7,PRDM4,PTPN11,PWP1,RAD9B,RASAL1,RBM19,RFX4,RIC8B,RITA1,RPH3A,RPL6,SART3,SDS,SDSL,SELPLG,SH2B3,SLC41A2,SLC8B1,SSH1,SVOP,TBX3,TBX5,TCHP,TCP11L2,TCTN1,TMEM116,TMEM119,TMEM263,TPCN1,TRAFD1,TRPV4,TXNRD1,UBE3B,UNG,USP30,VPS29,WSCD2"
TCGA.AA.3941	12	108820426	112998852	760	0.6504	SMALL-GAIN	NONFOCAL	55	"ACACB,ACAD10,ALDH2,ALKBH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC63,CORO1C,CUX2,DAO,ERP29,FAM109A,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,ISCU,KCTD10,MAPKAPK5,MMAB,MVK,MYL2,MYO1H,NAA25,PPP1CC,PPTC7,PTPN11,RAD9B,RPL6,SART3,SELPLG,SH2B3,SSH1,SVOP,TCHP,TCTN1,TMEM116,TMEM119,TRAFD1,TRPV4,UBE3B,UNG,USP30,VPS29"
TCGA.AA.3850	12	108858634	113152205	790	0.37865	SMALL-GAIN	NONFOCAL	55	"ACACB,ACAD10,ALDH2,ALKBH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC63,CORO1C,CUX2,DAO,ERP29,FAM109A,FAM216A,FAM222A,FICD,FOXN4,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,ISCU,KCTD10,MAPKAPK5,MMAB,MVK,MYL2,MYO1H,NAA25,PPP1CC,PPTC7,PTPN11,RAD9B,RPL6,SART3,SELPLG,SH2B3,SSH1,SVOP,TCHP,TCTN1,TMEM116,TMEM119,TRAFD1,TRPV4,UBE3B,UNG,USP30,VPS29"
TCGA.AG.3611.01A	12	110895293	112856822	186	0.3869	SMALL-GAIN	NONFOCAL	25	"ACAD10,ALDH2,ATXN2,BRAP,CCDC63,CUX2,ERP29,FAM109A,FAM216A,GPN3,HECTD4,HVCN1,MAPKAPK5,MYL2,NAA25,PPP1CC,PPTC7,PTPN11,RAD9B,RPL6,SH2B3,TCTN1,TMEM116,TRAFD1,VPS29"
TCGA.AG.3594	12	112123283	133777644	7757	0.3815	SMALL-GAIN	NONFOCAL	172	Too-Many
TCGA.AA.3861.01A	12	112480860	113553432	180	0.5383	SMALL-GAIN	NONFOCAL	11	"DTX1,HECTD4,NAA25,OAS1,OAS2,OAS3,PTPN11,RASAL1,RPH3A,RPL6,TRAFD1"
TCGA.AF.3913	12	113119812	116529937	1585	0.5433	SMALL-GAIN	NONFOCAL	20	"CCDC42B,DDX54,DTX1,IQCD,LHX5,MED13L,OAS1,OAS2,OAS3,PLBD2,RASAL1,RBM19,RITA1,RPH3A,SDS,SDSL,SLC8B1,TBX3,TBX5,TPCN1"
TCGA.AA.3941	12	113163492	114536856	499	0.5511	SMALL-GAIN	NONFOCAL	17	"CCDC42B,DDX54,DTX1,IQCD,LHX5,OAS1,OAS2,OAS3,PLBD2,RASAL1,RBM19,RITA1,RPH3A,SDS,SDSL,SLC8B1,TPCN1"
TCGA.A6.3808.01A	12	113266063	118814456	385	0.6194	SMALL-GAIN	NONFOCAL	35	"C12orf49,CCDC42B,DDX54,DTX1,FBXO21,FBXW8,HRK,IQCD,KSR2,LHX5,MAP1LC3B2,MED13L,NOS1,OAS1,OAS2,OAS3,PEBP1,PLBD2,RASAL1,RBM19,RFC5,RITA1,RNFT2,RPH3A,SDS,SDSL,SLC8B1,SUDS3,TAOK3,TBX3,TBX5,TESC,TPCN1,VSIG10,WSB2"
TCGA.AA.A010.01A	12	113549876	115111928	136	0.5655	SMALL-GAIN	NONFOCAL	14	"CCDC42B,DDX54,IQCD,LHX5,PLBD2,RASAL1,RBM19,RITA1,SDS,SDSL,SLC8B1,TBX3,TBX5,TPCN1"
TCGA.AA.3941	12	116252944	118889195	937	0.5358	SMALL-GAIN	NONFOCAL	16	"C12orf49,FBXO21,FBXW8,HRK,KSR2,MAP1LC3B2,MED13L,NOS1,PEBP1,RFC5,RNFT2,SUDS3,TAOK3,TESC,VSIG10,WSB2"
TCGA.AA.3844	12	119372064	133777644	5005	0.5062	SMALL-GAIN	NONFOCAL	126	Too-Many
TCGA.AA.3861.01A	12	120240961	121437054	171	0.4968	SMALL-GAIN	NONFOCAL	23	"ACADS,CABP1,CCDC64,CIT,COQ5,COX6A1,DYNLL1,GATC,GCN1L1,HNF1A,MLEC,MSI1,PLA2G1B,POP5,PXN,RAB35,RNF10,RPLP0,SIRT4,SPPL3,SRSF9,TRIAP1,UNC119B"
TCGA.AA.3979	12	121056635	133777644	4524	0.4648	SMALL-GAIN	NONFOCAL	104	Too-Many
TCGA.AG.3574	12	121652540	133777644	4340	0.4843	SMALL-GAIN	NONFOCAL	95	"AACS,ABCB9,ADGRD1,ANAPC5,ANKLE2,ARL6IP4,ATP6V0A2,B3GNT4,BCL7A,BRI3BP,C12orf65,CAMKK2,CCDC62,CCDC92,CDK2AP1,CHFR,CLIP1,DDX51,DDX55,DENR,DHX37,DIABLO,DNAH10,EIF2B1,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,HPD,IL31,KDM2B,KNTC1,LRCOL1,LRRC43,MLXIP,MMP17,MORN3,MPHOSPH9,NCOR2,NOC4L,OGFOD2,ORAI1,P2RX2,P2RX4,PGAM5,PITPNM2,PIWIL1,POLE,PSMD9,PUS1,PXMP2,RAN,RHOF,RILPL1,RILPL2,RIMBP2,RNF34,RSRC2,SBNO1,SCARB1,SETD1B,SETD8,SFSWAP,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM120B,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,VPS33A,VPS37B,WDR66,ZCCHC8,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF664,ZNF664-FAM101A,ZNF84,ZNF891"
TCGA.AA.3664	12	122612145	133777644	4218	0.3805	SMALL-GAIN	NONFOCAL	81	"AACS,ABCB9,ADGRD1,ANKLE2,ARL6IP4,ATP6V0A2,B3GNT4,BRI3BP,C12orf65,CCDC62,CCDC92,CDK2AP1,CHFR,CLIP1,DDX51,DDX55,DENR,DHX37,DIABLO,DNAH10,EIF2B1,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,GTF2H3,HCAR1,HCAR2,HCAR3,HIP1R,IL31,KNTC1,LRCOL1,LRRC43,MLXIP,MMP17,MPHOSPH9,NCOR2,NOC4L,OGFOD2,P2RX2,PGAM5,PITPNM2,PIWIL1,POLE,PUS1,PXMP2,RAN,RILPL1,RILPL2,RIMBP2,RSRC2,SBNO1,SCARB1,SETD8,SFSWAP,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,VPS33A,VPS37B,ZCCHC8,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF664,ZNF664-FAM101A,ZNF84,ZNF891"
TCGA.AA.3939.01A	12	124829092	132624133	296	0.5642	SMALL-GAIN	NONFOCAL	23	"AACS,ADGRD1,BRI3BP,DDX51,DHX37,EP400,FZD10,GLT1D1,MMP17,NCOR2,PIWIL1,PUS1,RAN,RIMBP2,SCARB1,SFSWAP,SLC15A4,STX2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1"
TCGA.G4.6299	12	129107480	133777644	1770	0.513	SMALL-GAIN	NONFOCAL	34	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.A6.6780	12	129473937	133777644	1594	0.4274	SMALL-GAIN	NONFOCAL	31	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.3941	12	130492008	133777644	997	0.6066	SMALL-GAIN	NONFOCAL	30	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.F5.6811.01A	13	18498070	114107413	3388	0.4626	SMALL-GAIN	NONFOCAL	302	Too-Many
TCGA.CK.5912	13	19212261	21695514	675	0.6241	SMALL-GAIN	NONFOCAL	15	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MPHOSPH8,N6AMT2,PSPC1,TPTE2,TUBA3C,XPO4,ZMYM2,ZMYM5"
TCGA.AA.3679	13	19212261	22160335	826	0.4453	SMALL-GAIN	NONFOCAL	20	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3872	13	19212261	22318710	876	0.659	SMALL-GAIN	NONFOCAL	21	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DM.A0X9	13	19212261	24024343	1698	0.4057	SMALL-GAIN	NONFOCAL	23	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.3742	13	19212261	24627727	1971	0.4305	SMALL-GAIN	NONFOCAL	28	"C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3544	13	19212261	24819039	2149	0.56	SMALL-GAIN	NONFOCAL	28	"C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.F5.6702	13	19212261	26965117	2954	0.4592	SMALL-GAIN	NONFOCAL	41	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.DM.A1HA	13	19212261	29977490	4269	0.4707	SMALL-GAIN	NONFOCAL	60	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SPATA13,TNFRSF19,TPTE2,TUBA3C,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.3727	13	19212261	31573040	5014	0.4567	SMALL-GAIN	NONFOCAL	68	"ALOX5AP,AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,IFT88,IL17D,KATNAL1,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.A6.2678	13	19212261	34656571	6262	0.4534	SMALL-GAIN	NONFOCAL	80	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3524	13	19212261	35748754	6609	0.4279	SMALL-GAIN	NONFOCAL	81	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3496	13	19212261	37732118	7305	0.4399	SMALL-GAIN	NONFOCAL	95	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CRYL1,CSNK1A1L,DCLK1,EXOSC8,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SERTM1,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3697	13	19212261	38568692	7708	0.5979	SMALL-GAIN	NONFOCAL	97	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CRYL1,CSNK1A1L,DCLK1,EXOSC8,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,POSTN,PSPC1,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SERTM1,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,TPTE2,TRPC4,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.A6.2681	13	19212261	42904964	9281	0.6392	SMALL-GAIN	NONFOCAL	117	Too-Many
TCGA.F5.6864	13	19212261	44469834	9974	0.5966	SMALL-GAIN	NONFOCAL	124	Too-Many
TCGA.G4.6311	13	19212261	46412505	10600	0.6138	SMALL-GAIN	NONFOCAL	137	Too-Many
TCGA.D5.6537	13	19212261	48517288	11377	0.4456	SMALL-GAIN	NONFOCAL	146	Too-Many
TCGA.A6.A56B	13	19212261	55985611	13360	0.5645	SMALL-GAIN	NONFOCAL	187	Too-Many
TCGA.D5.6536	13	19212261	58583309	13881	0.4186	SMALL-GAIN	NONFOCAL	193	Too-Many
TCGA.D5.5538	13	19212261	58583349	13881	0.4459	SMALL-GAIN	NONFOCAL	193	Too-Many
TCGA.AZ.6600	13	19212261	59226617	14040	0.4301	SMALL-GAIN	NONFOCAL	193	Too-Many
TCGA.G5.6572	13	19212261	63192037	15235	0.3818	SMALL-GAIN	NONFOCAL	196	Too-Many
TCGA.F5.6464	13	19212261	68197290	16648	0.5499	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.SS.A7HO	13	19212261	68379252	16680	0.5017	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.4T.AA8H	13	19212261	69235365	16877	0.6377	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.CA.6715	13	19212261	70212245	17100	0.4858	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.A6.6140	13	19212261	70733448	17355	0.4269	SMALL-GAIN	NONFOCAL	198	Too-Many
TCGA.AG.3893	13	19212261	72030744	17641	0.6742	SMALL-GAIN	NONFOCAL	199	Too-Many
TCGA.T9.A92H	13	19212261	73418725	18300	0.4696	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.AF.3913	13	19212261	73577727	18281	0.5415	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.D5.6534	13	19212261	73787342	18344	0.6359	SMALL-GAIN	NONFOCAL	204	Too-Many
TCGA.F5.6810	13	19212261	78662692	20250	0.4938	SMALL-GAIN	NONFOCAL	218	Too-Many
TCGA.AG.4015	13	19212261	80428006	20890	0.5574	SMALL-GAIN	NONFOCAL	222	Too-Many
TCGA.G4.6314	13	19212261	81636427	21318	0.6254	SMALL-GAIN	NONFOCAL	223	Too-Many
TCGA.AZ.5403	13	19212261	83287785	21731	0.3979	SMALL-GAIN	NONFOCAL	223	Too-Many
TCGA.D5.5540	13	19212261	84106471	21969	0.4907	SMALL-GAIN	NONFOCAL	223	Too-Many
TCGA.AA.3534	13	19212261	95625000	25509	0.4564	SMALL-GAIN	NONFOCAL	232	Too-Many
TCGA.AA.3527	13	19212261	95627009	25512	0.4343	SMALL-GAIN	NONFOCAL	232	Too-Many
TCGA.AF.2691	13	19212261	95627009	25506	0.435	SMALL-GAIN	NONFOCAL	232	Too-Many
TCGA.AA.3955	13	19212261	97291475	26026	0.5244	SMALL-GAIN	NONFOCAL	238	Too-Many
TCGA.AA.3842	13	19212261	102155290	27827	0.3804	SMALL-GAIN	NONFOCAL	259	Too-Many
TCGA.AG.3887	13	19212261	105415608	29283	0.4148	SMALL-GAIN	NONFOCAL	269	Too-Many
TCGA.DM.A1D4	13	19212261	106021066	29656	0.4531	SMALL-GAIN	NONFOCAL	269	Too-Many
TCGA.EI.6510	13	19212261	106131137	29649	0.4807	SMALL-GAIN	NONFOCAL	270	Too-Many
TCGA.AD.6963	13	19212261	112339390	32712	0.4719	SMALL-GAIN	NONFOCAL	287	Too-Many
TCGA.EF.5830	13	19212261	113582440	33076	0.4511	SMALL-GAIN	NONFOCAL	292	Too-Many
TCGA.AG.3882	13	19212261	115075714	33490	0.6328	SMALL-GAIN	NONFOCAL	313	Too-Many
TCGA.A6.2683	13	19212261	115086043	33419	0.4622	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.4N.A93T	13	19212261	115106995	33477	0.4909	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.2671	13	19212261	115106995	33445	0.4514	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.2674	13	19212261	115106995	33452	0.4661	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.2679	13	19212261	115106995	33445	0.3948	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.4107	13	19212261	115106995	33462	0.4889	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.5659	13	19212261	115106995	30457	0.4202	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.5666	13	19212261	115106995	33447	0.4795	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.6138	13	19212261	115106995	33479	0.6039	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.A6.A567	13	19212261	115106995	33221	0.6341	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3511	13	19212261	115106995	33389	0.5967	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3543	13	19212261	115106995	33448	0.5366	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3558	13	19212261	115106995	33477	0.5712	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3660	13	19212261	115106995	33472	0.4167	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3685	13	19212261	115106995	33493	0.49	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3688	13	19212261	115106995	33491	0.497	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3812	13	19212261	115106995	33496	0.4725	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3818	13	19212261	115106995	33488	0.4514	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3841	13	19212261	115106995	33488	0.6749	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3855	13	19212261	115106995	33439	0.481	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3858	13	19212261	115106995	33488	0.3888	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3976	13	19212261	115106995	33451	0.5563	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.3994	13	19212261	115106995	33443	0.4128	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.A02Y	13	19212261	115106995	33450	0.4584	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AD.6899	13	19212261	115106995	33371	0.3875	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AD.6901	13	19212261	115106995	33367	0.546	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AD.6965	13	19212261	115106995	33392	0.4374	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AD.A5EK	13	19212261	115106995	33271	0.4699	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AF.6136	13	19212261	115106995	33406	0.6764	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AF.A56K	13	19212261	115106995	33384	0.5427	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.3602	13	19212261	115106995	33326	0.4502	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.3894	13	19212261	115106995	33378	0.4287	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AH.6644	13	19212261	115106995	33376	0.4667	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AY.4070	13	19212261	115106995	33327	0.4685	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AY.4071	13	19212261	115106995	33333	0.597	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AY.5543	13	19212261	115106995	33227	0.3853	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AY.6197	13	19212261	115106995	32720	0.4906	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AZ.6598	13	19212261	115106995	33480	0.3935	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AZ.6603	13	19212261	115106995	33396	0.6353	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AZ.6608	13	19212261	115106995	33345	0.6466	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CI.6623	13	19212261	115106995	33403	0.6216	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CI.6624	13	19212261	115106995	33386	0.4624	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CL.4957	13	19212261	115106995	33485	0.4301	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CL.5918	13	19212261	115106995	33384	0.407	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.5344	13	19212261	115106995	33464	0.3914	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.5860	13	19212261	115106995	33427	0.6574	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.5868	13	19212261	115106995	33442	0.4462	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.6163	13	19212261	115106995	33349	0.4735	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.6169	13	19212261	115106995	33285	0.3846	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.6170	13	19212261	115106995	33479	0.4783	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.6172	13	19212261	115106995	33486	0.4393	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.6678	13	19212261	115106995	33382	0.6559	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.6679	13	19212261	115106995	33345	0.46425	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.D5.5541	13	19212261	115106995	33483	0.4621	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.D5.6531	13	19212261	115106995	33455	0.3985	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.D5.6922	13	19212261	115106995	33382	0.3998	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.D5.6929	13	19212261	115106995	33397	0.3975	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.DC.6158	13	19212261	115106995	33360	0.4721	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.DM.A28A	13	19212261	115106995	33395	0.3854	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.DY.A1H8	13	19212261	115106995	33463	0.5306	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.EI.6512	13	19212261	115106995	33472	0.5182	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.EI.6513	13	19212261	115106995	33482	0.4616	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.EI.6884	13	19212261	115106995	33368	0.6021	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.EI.7002	13	19212261	115106995	33404	0.4253	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.F4.6570	13	19212261	115106995	33474	0.4839	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.F5.6812	13	19212261	115106995	33396	0.5191	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.F5.6813	13	19212261	115106995	33413	0.4571	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.G4.6293	13	19212261	115106995	33458	0.6298	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.G4.6320	13	19212261	115106995	33477	0.4851	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.G4.6586	13	19212261	115106995	33475	0.3836	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.G5.6235	13	19212261	115106995	33482	0.4503	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.NH.A50V	13	19212261	115106995	33270	0.4184	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.NH.A8F7	13	19212261	115106995	33359	0.5075	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.NH.A8F8	13	19212261	115106995	33471	0.3939	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.QG.A5YV	13	19212261	115106995	33212	0.4795	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.DY.A0XA	13	19254915	21356854	590	0.6451	SMALL-GAIN	NONFOCAL	14	"CRYL1,GJA3,GJB2,GJB6,IFT88,IL17D,MPHOSPH8,N6AMT2,PSPC1,TPTE2,TUBA3C,XPO4,ZMYM2,ZMYM5"
TCGA.AF.2692	13	19260564	64234561	15521	0.4564	SMALL-GAIN	NONFOCAL	196	Too-Many
TCGA.AA.3930.01A	13	19600070	24876684	268	0.5748	SMALL-GAIN	NONFOCAL	28	"C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.A02H.01A	13	19600070	27333928	449	0.5441	SMALL-GAIN	NONFOCAL	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3939.01A	13	19600070	28588549	519	0.4619	SMALL-GAIN	NONFOCAL	55	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT3,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,IFT88,IL17D,LATS2,LNX2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PDX1,POLR1D,PSPC1,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,URAD,USP12,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.A017.01A	13	19600070	33110484	789	0.5889	SMALL-GAIN	NONFOCAL	76	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,CRYL1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,LATS2,LNX2,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,PSPC1,RASL11A,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.4009.01A	13	19600070	36888373	948	0.421	SMALL-GAIN	NONFOCAL	87	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CDK8,CDX2,CENPJ,CRYL1,DCLK1,FGF9,FLT1,FLT3,FRY,GJA3,GJB2,GJB6,GPR12,GSX1,GTF3A,HMGB1,HSPH1,IFT88,IL17D,KATNAL1,KL,LATS2,LNX2,MAB21L1,MEDAG,MICU2,MIPEP,MPHOSPH8,MRPL57,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,N6AMT2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,PSPC1,RASL11A,RFC3,RNF17,RNF6,RPL21,RXFP2,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SOHLH2,SPATA13,SPG20,STARD13,TEX26,TNFRSF19,TPTE2,TUBA3C,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZAR1L,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.A01C.01A	13	19600070	50062448	1595	0.4984	SMALL-GAIN	NONFOCAL	158	Too-Many
TCGA.AG.A00H.01A	13	19600070	113917747	2989	0.5551	SMALL-GAIN	NONFOCAL	298	Too-Many
TCGA.AA.A01D.01A	13	19600070	115089311	3023	0.5875	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AA.A02W.01A	13	19600070	115089311	3090	0.4232	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.A015.01A	13	19600070	115089311	3105	0.6479	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.CM.6165.01A	13	19600070	115089311	3401	0.593	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.AG.3583	13	19604053	115106995	32605	0.4169	SMALL-GAIN	NONFOCAL	314	Too-Many
TCGA.D5.6926	13	19611007	27382325	3072	0.5991	SMALL-GAIN	NONFOCAL	43	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,GPR12,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,WASF3,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3532	13	19700921	95614922	25385	0.5501	SMALL-GAIN	NONFOCAL	232	Too-Many
TCGA.AA.A00Q.01A	13	19759365	25353769	225	0.4695	SMALL-GAIN	NONFOCAL	31	"ATP12A,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,N6AMT2,PARP4,PSPC1,RNF17,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.3728	13	19759646	115106995	33338	0.5669	SMALL-GAIN	NONFOCAL	313	Too-Many
TCGA.AG.A026	13	19773378	64822213	15492	0.4253	SMALL-GAIN	NONFOCAL	195	Too-Many
TCGA.AA.3811	13	19925983	22318710	669	0.4993	SMALL-GAIN	NONFOCAL	20	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3982	13	19926643	22316049	664	0.4136	SMALL-GAIN	NONFOCAL	20	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AA.3844	13	19952958	22316049	658	0.5763	SMALL-GAIN	NONFOCAL	20	"CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MPHOSPH8,MRPL57,N6AMT2,PSPC1,SAP18,SKA3,TPTE2,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.A6.5656	13	20940030	82881408	21104	0.5528	SMALL-GAIN	NONFOCAL	214	Too-Many
TCGA.DY.A1DG	13	21060046	70926406	16898	0.4206	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.AG.A00C.01A	13	21172749	25058740	184	0.4064	SMALL-GAIN	NONFOCAL	20	"C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,FGF9,IFT88,IL17D,LATS2,MICU2,MIPEP,MRPL57,N6AMT2,PARP4,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,XPO4,ZDHHC20"
TCGA.AA.A00D.01A	13	21331564	31903591	473	0.6678	SMALL-GAIN	NONFOCAL	58	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FGF9,FLT1,FLT3,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,LATS2,LNX2,MEDAG,MICU2,MIPEP,MRPL57,MTIF3,MTMR6,MTUS2,N6AMT2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,UBL3,URAD,USP12,USPL1,WASF3,XPO4,ZDHHC20"
TCGA.DC.6154	13	21683286	28391952	2956	0.6621	SMALL-GAIN	NONFOCAL	36	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,FGF9,GPR12,GSX1,GTF3A,LNX2,MICU2,MIPEP,MRPL57,MTIF3,MTMR6,NUPL1,PABPC3,PARP4,POLR1D,RASL11A,RNF17,RNF6,RPL21,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,USP12,WASF3,ZDHHC20"
TCGA.AA.3548	13	21800969	26908030	2251	0.388	SMALL-GAIN	NONFOCAL	23	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,FGF9,MICU2,MIPEP,MTMR6,NUPL1,PABPC3,PARP4,RNF17,RNF6,SACS,SGCG,SHISA2,SPATA13,TNFRSF19,ZDHHC20"
TCGA.AA.A02F.01A	13	22255132	110859703	2556	0.5963	SMALL-GAIN	NONFOCAL	259	Too-Many
TCGA.AA.3811	13	22321689	33850711	5051	0.409	SMALL-GAIN	NONFOCAL	58	"ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MEDAG,MIPEP,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,RXFP2,SACS,SGCG,SHISA2,SLC46A3,SLC7A1,SPATA13,STARD13,TEX26,TNFRSF19,UBL3,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.AA.3872	13	23255555	37850705	6017	0.5802	SMALL-GAIN	NONFOCAL	74	"ALG5,ALOX5AP,AMER2,ATP12A,ATP8A2,B3GALTL,BRCA2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CENPJ,CSNK1A1L,DCLK1,EXOSC8,FLT1,FLT3,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MAB21L1,MEDAG,MIPEP,MTIF3,MTMR6,MTUS2,N4BP2L1,N4BP2L2,NBEA,NUPL1,PABPC3,PAN3,PARP4,PDS5B,PDX1,POLR1D,POMP,RASL11A,RFC3,RFXAP,RNF17,RNF6,RPL21,RXFP2,SACS,SERTM1,SGCG,SHISA2,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPATA13,SPG20,STARD13,SUPT20H,TEX26,TNFRSF19,UBL3,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.QG.A5YX	13	23495720	80850383	19487	0.5516	SMALL-GAIN	NONFOCAL	201	Too-Many
TCGA.AZ.4684.01A	13	23914873	31548917	460	0.4069	SMALL-GAIN	NONFOCAL	46	"ALOX5AP,AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CDX2,CENPJ,FLT1,FLT3,GPR12,GSX1,GTF3A,HMGB1,KATNAL1,LNX2,MEDAG,MIPEP,MTIF3,MTMR6,MTUS2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SACS,SHISA2,SLC46A3,SLC7A1,SPATA13,TEX26,TNFRSF19,UBL3,URAD,USP12,USPL1,WASF3"
TCGA.DM.A0X9	13	24048951	73494598	16600	0.4241	SMALL-GAIN	NONFOCAL	180	Too-Many
TCGA.AA.3844	13	24495911	27712092	1440	0.5381	SMALL-GAIN	NONFOCAL	17	"AMER2,ATP12A,ATP8A2,C1QTNF9,CDK8,CENPJ,GPR12,MTMR6,NUPL1,PABPC3,PARP4,RNF17,RNF6,SHISA2,SPATA13,USP12,WASF3"
TCGA.AG.3742	13	24635343	27444909	1197	0.4331	SMALL-GAIN	NONFOCAL	16	"AMER2,ATP12A,ATP8A2,C1QTNF9,CDK8,CENPJ,GPR12,MTMR6,NUPL1,PABPC3,PARP4,RNF17,RNF6,SHISA2,SPATA13,WASF3"
TCGA.DC.4745	13	24767988	115106995	31369	0.5046	SMALL-GAIN	NONFOCAL	287	Too-Many
TCGA.CK.5912	13	24848335	31526484	2816	0.628	SMALL-GAIN	NONFOCAL	41	"ALOX5AP,AMER2,ATP12A,ATP8A2,C1QTNF9,CDK8,CDX2,CENPJ,FLT1,FLT3,GPR12,GSX1,GTF3A,HMGB1,KATNAL1,LNX2,MEDAG,MTIF3,MTMR6,MTUS2,NUPL1,PABPC3,PAN3,PARP4,PDX1,POLR1D,POMP,RASL11A,RNF17,RNF6,RPL21,SHISA2,SLC46A3,SLC7A1,SPATA13,TEX26,UBL3,URAD,USP12,USPL1,WASF3"
TCGA.AA.3930.01A	13	25363468	28589678	192	0.5253	SMALL-GAIN	NONFOCAL	24	"AMER2,ATP8A2,CDK8,CDX2,CENPJ,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,MTMR6,NUPL1,PABPC3,PDX1,POLR1D,RASL11A,RNF17,RNF6,RPL21,SHISA2,URAD,USP12,WASF3"
TCGA.D5.5539	13	26719101	42036065	6079	0.676	SMALL-GAIN	NONFOCAL	75	"ALG5,ALOX5AP,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,COG6,CSNK1A1L,DCLK1,ELF1,EXOSC8,FLT1,FLT3,FOXO1,FREM2,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KBTBD6,KBTBD7,KL,LHFP,LNX2,MAB21L1,MEDAG,MRPS31,MTIF3,MTRF1,MTUS2,N4BP2L1,N4BP2L2,NAA16,NBEA,NHLRC3,PAN3,PDS5B,PDX1,POLR1D,POMP,POSTN,PROSER1,RASL11A,RFC3,RFXAP,RGCC,RNF6,RPL21,RXFP2,SERTM1,SLC25A15,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPG20,STARD13,STOML3,SUPT20H,TEX26,TRPC4,UBL3,UFM1,URAD,USP12,USPL1,WASF3,WBP4,ZAR1L"
TCGA.EI.6508	13	26797493	39821472	5277	0.4383	SMALL-GAIN	NONFOCAL	62	"ALG5,ALOX5AP,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CDK8,CDX2,CSNK1A1L,DCLK1,EXOSC8,FLT1,FLT3,FREM2,FRY,GPR12,GSX1,GTF3A,HMGB1,HSPH1,KATNAL1,KL,LNX2,MAB21L1,MEDAG,MTIF3,MTUS2,N4BP2L1,N4BP2L2,NBEA,NHLRC3,PAN3,PDS5B,PDX1,POLR1D,POMP,POSTN,PROSER1,RASL11A,RFC3,RFXAP,RPL21,RXFP2,SERTM1,SLC46A3,SLC7A1,SMAD9,SOHLH2,SPG20,STARD13,STOML3,SUPT20H,TEX26,TRPC4,UBL3,UFM1,URAD,USP12,USPL1,WASF3,ZAR1L"
TCGA.AG.3742	13	27638989	115106995	29957	0.4344	SMALL-GAIN	NONFOCAL	271	Too-Many
TCGA.AA.3844	13	28545267	31988242	1518	0.5011	SMALL-GAIN	NONFOCAL	17	"ALOX5AP,B3GALTL,FLT1,FLT3,HMGB1,HSPH1,KATNAL1,MEDAG,MTUS2,PAN3,POMP,SLC46A3,SLC7A1,TEX26,UBL3,URAD,USPL1"
TCGA.AA.3939.01A	13	28623484	99338394	2034	0.4444	SMALL-GAIN	NONFOCAL	192	Too-Many
TCGA.AA.3930.01A	13	28750588	34395220	349	0.5392	SMALL-GAIN	NONFOCAL	25	"ALOX5AP,B3GALTL,BRCA2,FLT1,FRY,HMGB1,HSPH1,KATNAL1,KL,MEDAG,MTUS2,N4BP2L1,N4BP2L2,PAN3,PDS5B,POMP,RFC3,RXFP2,SLC46A3,SLC7A1,STARD13,TEX26,UBL3,USPL1,ZAR1L"
TCGA.DC.6154	13	28776630	115106995	29648	0.6442	SMALL-GAIN	NONFOCAL	259	Too-Many
TCGA.AA.3968	13	28879920	32108928	1470	0.6063	SMALL-GAIN	NONFOCAL	14	"ALOX5AP,B3GALTL,FLT1,HMGB1,HSPH1,KATNAL1,MEDAG,MTUS2,POMP,SLC46A3,SLC7A1,TEX26,UBL3,USPL1"
TCGA.AA.A02H.01A	13	29607973	33257978	228	0.6361	SMALL-GAIN	NONFOCAL	18	"ALOX5AP,B3GALTL,BRCA2,FRY,HMGB1,HSPH1,KATNAL1,MEDAG,MTUS2,N4BP2L1,N4BP2L2,PDS5B,RXFP2,SLC7A1,TEX26,UBL3,USPL1,ZAR1L"
TCGA.F5.6702	13	30000196	35652805	2319	0.4069	SMALL-GAIN	NONFOCAL	22	"ALOX5AP,B3GALTL,BRCA2,FRY,HMGB1,HSPH1,KATNAL1,KL,MEDAG,MTUS2,N4BP2L1,N4BP2L2,NBEA,PDS5B,RFC3,RXFP2,SLC7A1,STARD13,TEX26,UBL3,USPL1,ZAR1L"
TCGA.RU.A8FL	13	30236232	34893248	1951	0.4849	SMALL-GAIN	NONFOCAL	19	"ALOX5AP,B3GALTL,BRCA2,FRY,HMGB1,HSPH1,KATNAL1,KL,MEDAG,N4BP2L1,N4BP2L2,PDS5B,RFC3,RXFP2,STARD13,TEX26,UBL3,USPL1,ZAR1L"
TCGA.DC.6157	13	30280575	115106995	28786	0.405	SMALL-GAIN	NONFOCAL	253	Too-Many
TCGA.G4.6299	13	31467910	110672967	26948	0.5785	SMALL-GAIN	NONFOCAL	212	Too-Many
TCGA.AG.3727	13	31575088	73465988	13316	0.4027	SMALL-GAIN	NONFOCAL	135	Too-Many
TCGA.CK.5912	13	31725373	50894837	6863	0.6361	SMALL-GAIN	NONFOCAL	98	"AKAP11,ALG5,ARL11,B3GALTL,BRCA2,CAB39L,CCDC122,CCDC169,CCDC169-SOHLH2,CCNA1,CDADC1,COG3,COG6,CPB2,CSNK1A1L,CYSLTR2,DCLK1,DGKH,DNAJC15,EBPL,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,EXOSC8,FAM216B,FNDC3A,FOXO1,FREM2,FRY,GPALPP1,GTF2F2,HSPH1,HTR2A,ITM2B,KBTBD6,KBTBD7,KCNRG,KCTD4,KIAA0226L,KL,KPNA3,LACC1,LCP1,LHFP,LPAR6,LRCH1,LRRC63,MAB21L1,MED4,MLNR,MRPS31,MTRF1,N4BP2L1,N4BP2L2,NAA16,NBEA,NHLRC3,NUDT15,NUFIP1,PDS5B,PHF11,POSTN,PROSER1,RB1,RCBTB1,RCBTB2,RFC3,RFXAP,RGCC,RXFP2,SERP2,SERTM1,SETDB2,SIAH3,SLC25A15,SLC25A30,SMAD9,SMIM2,SOHLH2,SPERT,SPG20,SPRYD7,STARD13,STOML3,SUCLA2,SUPT20H,TNFSF11,TPT1,TRIM13,TRPC4,TSC22D1,UFM1,VWA8,WBP4,ZAR1L,ZC3H13"
TCGA.AA.A00F.01A	13	32906362	39586781	228	0.6447	SMALL-GAIN	NONFOCAL	28	"ALG5,BRCA2,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,FREM2,KL,MAB21L1,N4BP2L1,N4BP2L2,NBEA,PDS5B,POSTN,PROSER1,RFC3,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,STARD13,STOML3,SUPT20H,TRPC4,UFM1"
TCGA.AA.3681	13	34318283	74601934	12660	0.6774	SMALL-GAIN	NONFOCAL	126	Too-Many
TCGA.AA.A017.01A	13	36006369	115089311	2187	0.5744	SMALL-GAIN	NONFOCAL	234	Too-Many
TCGA.AZ.4684.01A	13	36202181	37599410	103	0.5127	SMALL-GAIN	NONFOCAL	13	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,DCLK1,EXOSC8,NBEA,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H"
TCGA.AA.3930.01A	13	36348625	77764331	1258	0.5126	SMALL-GAIN	NONFOCAL	133	Too-Many
TCGA.AA.A00D.01A	13	36521445	37678338	81	0.6628	SMALL-GAIN	NONFOCAL	13	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H"
TCGA.AG.A00C.01A	13	36521445	38137387	80	0.5527	SMALL-GAIN	NONFOCAL	14	"ALG5,CCDC169,CCDC169-SOHLH2,CCNA1,CSNK1A1L,DCLK1,EXOSC8,POSTN,RFXAP,SERTM1,SMAD9,SOHLH2,SPG20,SUPT20H"
TCGA.AA.3872	13	37869529	115106995	26080	0.4926	SMALL-GAIN	NONFOCAL	219	Too-Many
TCGA.AA.3846	13	38382981	115106995	25787	0.6746	SMALL-GAIN	NONFOCAL	218	Too-Many
TCGA.AA.3697	13	38829359	55363416	5474	0.6172	SMALL-GAIN	NONFOCAL	90	"AKAP11,ALG11,ARL11,ATP7B,CAB39L,CCDC122,CCDC70,CDADC1,CKAP2,COG3,COG6,CPB2,CYSLTR2,DGKH,DHRS12,DLEU7,DNAJC15,EBPL,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM124A,FAM216B,FNDC3A,FOXO1,FREM2,GPALPP1,GTF2F2,HNRNPA1L2,HTR2A,INTS6,ITM2B,KBTBD6,KBTBD7,KCNRG,KCTD4,KIAA0226L,KPNA3,LACC1,LCP1,LECT1,LHFP,LPAR6,LRCH1,LRRC63,MED4,MLNR,MRPS31,MTRF1,NAA16,NEK3,NEK5,NHLRC3,NUDT15,NUFIP1,OLFM4,PCDH8,PHF11,PROSER1,RB1,RCBTB1,RCBTB2,RGCC,RNASEH2B,SERP2,SERPINE3,SETDB2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,SPRYD7,STOML3,SUCLA2,SUGT1,THSD1,TNFSF11,TPT1,TRIM13,TSC22D1,UFM1,UTP14C,VPS36,VWA8,WBP4,WDFY2,ZC3H13"
TCGA.AA.3496	13	39128912	42911954	1378	0.4322	SMALL-GAIN	NONFOCAL	19	"AKAP11,COG6,DGKH,ELF1,FOXO1,FREM2,KBTBD6,KBTBD7,LHFP,MRPS31,MTRF1,NAA16,NHLRC3,PROSER1,RGCC,SLC25A15,STOML3,VWA8,WBP4"
TCGA.RU.A8FL	13	39195568	45714729	2450	0.4952	SMALL-GAIN	NONFOCAL	32	"AKAP11,CCDC122,COG6,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,FAM216B,FOXO1,FREM2,GPALPP1,GTF2F2,KBTBD6,KBTBD7,LACC1,LHFP,MRPS31,MTRF1,NAA16,NHLRC3,NUFIP1,PROSER1,RGCC,SERP2,SLC25A15,SMIM2,STOML3,TNFSF11,TSC22D1,VWA8,WBP4"
TCGA.AA.3664	13	39310194	44519280	2023	0.382	SMALL-GAIN	NONFOCAL	26	"AKAP11,CCDC122,COG6,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,FAM216B,FOXO1,FREM2,KBTBD6,KBTBD7,LACC1,LHFP,MRPS31,MTRF1,NAA16,NHLRC3,PROSER1,RGCC,SLC25A15,STOML3,TNFSF11,VWA8,WBP4"
TCGA.AA.A00D.01A	13	39564731	43155274	171	0.6739	SMALL-GAIN	NONFOCAL	19	"AKAP11,COG6,DGKH,ELF1,FOXO1,KBTBD6,KBTBD7,LHFP,MRPS31,MTRF1,NAA16,NHLRC3,PROSER1,RGCC,SLC25A15,STOML3,TNFSF11,VWA8,WBP4"
TCGA.AG.A01Y	13	42137796	115074877	24406	0.4954	SMALL-GAIN	NONFOCAL	199	Too-Many
TCGA.A6.2681	13	42915653	78939960	11132	0.65	SMALL-GAIN	NONFOCAL	101	Too-Many
TCGA.AA.3531	13	43163798	115106995	24083	0.6211	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.AA.3496	13	43616538	48671080	1873	0.4196	SMALL-GAIN	NONFOCAL	28	"CCDC122,COG3,CPB2,DNAJC15,ENOX1,ERICH6B,ESD,GPALPP1,GTF2F2,HTR2A,KCTD4,KIAA0226L,LACC1,LCP1,LRCH1,LRRC63,MED4,NUDT15,NUFIP1,SERP2,SIAH3,SLC25A30,SMIM2,SPERT,SUCLA2,TPT1,TSC22D1,ZC3H13"
TCGA.AZ.4684.01A	13	44948117	51929127	399	0.4864	SMALL-GAIN	NONFOCAL	45	"ARL11,CAB39L,CDADC1,COG3,CPB2,CYSLTR2,DLEU7,EBPL,ERICH6B,ESD,FAM124A,FNDC3A,GPALPP1,GTF2F2,HTR2A,ITM2B,KCNRG,KCTD4,KIAA0226L,KPNA3,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NUDT15,NUFIP1,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERP2,SERPINE3,SETDB2,SIAH3,SLC25A30,SPERT,SPRYD7,SUCLA2,TPT1,TRIM13,TSC22D1,ZC3H13"
TCGA.G4.6303	13	45289356	115106995	23180	0.4441	SMALL-GAIN	NONFOCAL	187	Too-Many
TCGA.AG.3909.01A	13	46066242	51825564	290	0.4368	SMALL-GAIN	NONFOCAL	36	"ARL11,CAB39L,CDADC1,COG3,CPB2,CYSLTR2,DLEU7,EBPL,ERICH6B,ESD,FAM124A,FNDC3A,HTR2A,ITM2B,KCNRG,KIAA0226L,KPNA3,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NUDT15,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SETDB2,SIAH3,SPERT,SPRYD7,SUCLA2,TRIM13,ZC3H13"
TCGA.AG.4009.01A	13	46077329	52604764	357	0.4053	SMALL-GAIN	NONFOCAL	44	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,COG3,CPB2,CYSLTR2,DHRS12,DLEU7,EBPL,ERICH6B,ESD,FAM124A,FNDC3A,HTR2A,INTS6,ITM2B,KCNRG,KIAA0226L,KPNA3,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NUDT15,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SIAH3,SPERT,SPRYD7,SUCLA2,TRIM13,UTP14C,WDFY2,ZC3H13"
TCGA.AA.A00D.01A	13	46619052	49951049	179	0.6277	SMALL-GAIN	NONFOCAL	20	"CAB39L,CDADC1,CPB2,CYSLTR2,ESD,FNDC3A,HTR2A,ITM2B,KIAA0226L,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NUDT15,RB1,RCBTB2,SUCLA2,ZC3H13"
TCGA.G5.6641	13	47921148	115106995	22173	0.4566	SMALL-GAIN	NONFOCAL	169	Too-Many
TCGA.AA.3844	13	48030397	52049945	1132	0.3984	SMALL-GAIN	NONFOCAL	26	"ARL11,CAB39L,CDADC1,CYSLTR2,DLEU7,EBPL,FAM124A,FNDC3A,INTS6,ITM2B,KCNRG,KPNA3,LPAR6,MED4,MLNR,NUDT15,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUCLA2,TRIM13"
TCGA.DM.A28F	13	48085525	70622280	5976	0.3871	SMALL-GAIN	NONFOCAL	53	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,CYSLTR2,DHRS12,DIAPH3,DLEU7,EBPL,FAM124A,FNDC3A,HNRNPA1L2,INTS6,ITM2B,KCNRG,KLHL1,KPNA3,LECT1,LPAR6,MED4,MLNR,NEK3,NEK5,NUDT15,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PHF11,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUCLA2,SUGT1,TDRD3,THSD1,TRIM13,UTP14C,VPS36,WDFY2"
TCGA.RU.A8FL	13	48341553	115106995	22065	0.4901	SMALL-GAIN	NONFOCAL	169	Too-Many
TCGA.D5.6537	13	48549836	115106995	21864	0.4675	SMALL-GAIN	NONFOCAL	169	Too-Many
TCGA.AA.3496	13	50192258	115106995	21526	0.3864	SMALL-GAIN	NONFOCAL	154	Too-Many
TCGA.A6.2678	13	50531766	115106995	21536	0.4625	SMALL-GAIN	NONFOCAL	150	Too-Many
TCGA.CK.5912	13	51452750	115106995	21201	0.6332	SMALL-GAIN	NONFOCAL	147	Too-Many
TCGA.A6.6649	13	51549556	69231044	4636	0.5801	SMALL-GAIN	NONFOCAL	29	"ALG11,ATP7B,CCDC70,CKAP2,DHRS12,DIAPH3,FAM124A,HNRNPA1L2,INTS6,LECT1,NEK3,NEK5,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,SERPINE3,SUGT1,TDRD3,THSD1,UTP14C,VPS36,WDFY2"
TCGA.AZ.4684.01A	13	51956131	53608434	139	0.3981	SMALL-GAIN	NONFOCAL	17	"ALG11,ATP7B,CCDC70,CKAP2,DHRS12,HNRNPA1L2,INTS6,LECT1,NEK3,NEK5,OLFM4,PCDH8,SUGT1,THSD1,UTP14C,VPS36,WDFY2"
TCGA.AA.3844	13	52077992	53932714	443	0.4669	SMALL-GAIN	NONFOCAL	16	"ALG11,ATP7B,CCDC70,CKAP2,DHRS12,HNRNPA1L2,LECT1,NEK3,NEK5,OLFM4,PCDH8,SUGT1,THSD1,UTP14C,VPS36,WDFY2"
TCGA.AA.A00Q.01A	13	52439478	53286854	68	0.5667	SMALL-GAIN	NONFOCAL	12	"ALG11,ATP7B,CCDC70,CKAP2,HNRNPA1L2,LECT1,NEK3,NEK5,SUGT1,THSD1,UTP14C,VPS36"
TCGA.AA.A01C.01A	13	53047926	111153977	1039	0.5617	SMALL-GAIN	NONFOCAL	99	"ABCC4,ABHD13,ARGLU1,BIVM,BIVM-ERCC5,BORA,CCDC168,CKAP2,CLDN10,CLN5,CLYBL,COL4A1,COL4A2,COMMD6,DACH1,DAOA,DCT,DIAPH3,DIS3,DNAJC3,DOCK9,DZIP1,EDNRB,EFNB2,ERCC5,FAM155A,FARP1,FBXL3,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HNRNPA1L2,HS6ST3,IPO5,IRG1,IRS2,ITGBL1,KCTD12,KDELC1,KLF12,KLF5,KLHL1,LECT1,LIG4,LMO7,LMO7DN,MBNL2,METTL21C,MYCBP2,MYO16,MZT1,NALCN,NDFIP2,OLFM4,OXGR1,PCCA,PCDH17,PCDH20,PCDH8,PCDH9,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,SUGT1,TBC1D4,TDRD3,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UCHL3,UGGT2,ZIC2,ZIC5"
TCGA.AA.A00D.01A	13	53277709	61985325	30	0.5199	SMALL-GAIN	NONFOCAL	12	"DIAPH3,LECT1,OLFM4,PCDH17,PCDH20,PCDH8,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.AA.A00F.01A	13	53420680	72146930	37	0.4098	SMALL-GAIN	NONFOCAL	14	"DACH1,DIAPH3,KLHL1,OLFM4,PCDH17,PCDH20,PCDH8,PCDH9,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.AG.3909.01A	13	53602920	72204656	73	0.6767	SMALL-GAIN	NONFOCAL	13	"DACH1,DIAPH3,KLHL1,OLFM4,PCDH17,PCDH20,PCDH9,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.AG.4009.01A	13	53602920	76432032	199	0.4317	SMALL-GAIN	NONFOCAL	23	"BORA,COMMD6,DACH1,DIAPH3,DIS3,KLF12,KLF5,KLHL1,LMO7,MZT1,OLFM4,PCDH17,PCDH20,PCDH9,PIBF1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TBC1D4,TDRD3,UCHL3"
TCGA.DT.5265	13	58499889	115106995	19559	0.4158	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.D5.5538	13	58605260	115106995	19575	0.4562	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.D5.6536	13	58605260	115106995	19587	0.4335	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.AZ.6600	13	59239475	115106995	19409	0.4344	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.G5.6572	13	63206066	99234360	11422	0.6665	SMALL-GAIN	NONFOCAL	49	"ABCC4,BORA,CLDN10,CLN5,COMMD6,DACH1,DCT,DIS3,DNAJC3,DZIP1,EDNRB,FARP1,FBXL3,GPC5,GPC6,GPR180,HS6ST3,IPO5,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MBNL2,MYCBP2,MZT1,NDFIP2,OXGR1,PCDH9,PIBF1,POU4F1,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TBC1D4,TGDS,UCHL3,UGGT2"
TCGA.AA.3867	13	63390479	95011789	9953	0.5415	SMALL-GAIN	NONFOCAL	32	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,GPC5,GPC6,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH9,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SPRY2,TBC1D4,UCHL3"
TCGA.AA.3697	13	63680949	81137319	5812	0.5695	SMALL-GAIN	NONFOCAL	27	"BORA,CLN5,COMMD6,DACH1,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH9,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AF.2692	13	64262269	115106995	17939	0.5389	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AG.A026	13	64930596	115106995	17760	0.4358	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.F5.6464	13	68493183	112550204	16080	0.5649	SMALL-GAIN	NONFOCAL	90	"ABCC4,ABHD13,ANKRD10,ARGLU1,ARHGEF7,BIVM,BIVM-ERCC5,BORA,CARKD,CARS2,CCDC168,CLDN10,CLN5,CLYBL,COL4A1,COL4A2,COMMD6,DACH1,DAOA,DCT,DIS3,DNAJC3,DOCK9,DZIP1,EDNRB,EFNB2,ERCC5,FAM155A,FARP1,FBXL3,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,ING1,IPO5,IRG1,IRS2,ITGBL1,KCTD12,KDELC1,KLF12,KLF5,KLHL1,LIG4,LMO7,LMO7DN,MBNL2,METTL21C,MYCBP2,MYO16,MZT1,NALCN,NDFIP2,OXGR1,PCCA,PIBF1,POU4F1,RAB20,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TBC1D4,TEX29,TEX30,TGDS,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,UCHL3,UGGT2,ZIC2,ZIC5"
TCGA.4T.AA8H	13	69269118	115106995	16588	0.6351	SMALL-GAIN	NONFOCAL	117	Too-Many
TCGA.A6.6140	13	70789990	78206892	2784	0.4365	SMALL-GAIN	NONFOCAL	18	"BORA,CLN5,COMMD6,DACH1,DIS3,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,PIBF1,SCEL,TBC1D4,UCHL3"
TCGA.SS.A7HO	13	71285665	115106995	15922	0.5004	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.AG.3893	13	72401044	115106995	15485	0.6592	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.AG.3883	13	72495819	83294036	3874	0.3798	SMALL-GAIN	NONFOCAL	24	"BORA,CLN5,COMMD6,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AA.3941	13	73095985	81988481	3215	0.4117	SMALL-GAIN	NONFOCAL	24	"BORA,CLN5,COMMD6,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,UCHL3"
TCGA.AA.3968	13	73174463	97333863	7815	0.5091	SMALL-GAIN	NONFOCAL	39	"ABCC4,BORA,CLDN10,CLN5,COMMD6,DCT,DIS3,DNAJC3,DZIP1,EDNRB,FBXL3,GPC5,GPC6,GPR180,HS6ST3,IRG1,KCTD12,KLF12,KLF5,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PIBF1,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3,UGGT2"
TCGA.AG.3727	13	73691235	115106995	15126	0.4273	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.AF.3913	13	73765342	115106995	15036	0.4845	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.D5.6534	13	74064407	115106995	14875	0.6411	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.DM.A0X9	13	74064407	115106995	14922	0.4239	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.DY.A1DG	13	74308129	101807963	9051	0.4256	SMALL-GAIN	NONFOCAL	54	"ABCC4,CLDN10,CLN5,CLYBL,COMMD6,DCT,DNAJC3,DOCK9,DZIP1,EDNRB,FARP1,FBXL3,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MBNL2,MYCBP2,NALCN,NDFIP2,OXGR1,PCCA,POU4F1,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TBC1D4,TGDS,TM9SF2,TMTC4,UBAC2,UCHL3,UGGT2,ZIC2,ZIC5"
TCGA.AA.3681	13	74611940	95553655	6714	0.6565	SMALL-GAIN	NONFOCAL	28	"CLN5,COMMD6,DCT,EDNRB,FBXL3,GPC5,GPC6,GPR180,IRG1,KCTD12,KLF12,LMO7,LMO7DN,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,TBC1D4,TGDS,UCHL3"
TCGA.QG.A5Z1	13	75055942	78852242	1386	0.5774	SMALL-GAIN	NONFOCAL	13	"CLN5,COMMD6,EDNRB,FBXL3,IRG1,KCTD12,LMO7,LMO7DN,MYCBP2,SCEL,SLAIN1,TBC1D4,UCHL3"
TCGA.AG.4009.01A	13	77619466	86368066	169	0.4104	SMALL-GAIN	NONFOCAL	11	"EDNRB,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK6,SPRY2"
TCGA.AA.A00F.01A	13	77619466	95092114	184	0.4421	SMALL-GAIN	NONFOCAL	15	"DCT,EDNRB,GPC5,GPC6,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SLITRK1,SLITRK5,SLITRK6,SPRY2"
TCGA.AA.A00D.01A	13	77619466	101289740	483	0.5206	SMALL-GAIN	NONFOCAL	43	"ABCC4,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,EDNRB,FARP1,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,MBNL2,MYCBP2,NDFIP2,OXGR1,PCCA,POU4F1,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TGDS,TM9SF2,TMTC4,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AG.A00C.01A	13	77619466	103400949	641	0.6243	SMALL-GAIN	NONFOCAL	49	"ABCC4,CCDC168,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,EDNRB,FARP1,FGF14,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,ITGBL1,MBNL2,METTL21C,MYCBP2,NALCN,NDFIP2,OXGR1,PCCA,POU4F1,RAP2A,RBM26,RNF113B,RNF219,SCEL,SLAIN1,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX21,SPRY2,STK24,TGDS,TM9SF2,TMTC4,TPP2,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.F5.6810	13	78667057	115106995	13151	0.4712	SMALL-GAIN	NONFOCAL	96	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,NDFIP2,OXGR1,PCCA,PCID2,POU4F1,PROZ,RAB20,RAP2A,RASA3,RBM26,RNF113B,RNF219,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,SPRY2,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AZ.5403	13	83307211	98527273	4654	0.4032	SMALL-GAIN	NONFOCAL	18	"ABCC4,CLDN10,DCT,DNAJC3,DZIP1,GPC5,GPC6,GPR180,HS6ST3,MBNL2,OXGR1,RAP2A,SLITRK1,SLITRK5,SLITRK6,SOX21,TGDS,UGGT2"
TCGA.A6.5656	13	83703347	115106995	11553	0.5325	SMALL-GAIN	NONFOCAL	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.D5.5540	13	84146225	115106995	11490	0.4675	SMALL-GAIN	NONFOCAL	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.QL.A97D	13	84172417	115106995	11475	0.4143	SMALL-GAIN	NONFOCAL	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3679	13	86326951	115106995	10809	0.673	SMALL-GAIN	NONFOCAL	90	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.A6.6140	13	86953914	115106995	10649	0.4236	SMALL-GAIN	NONFOCAL	89	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK5,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AG.4009.01A	13	92051249	99853648	293	0.4569	SMALL-GAIN	NONFOCAL	22	"ABCC4,CLDN10,DCT,DNAJC3,DOCK9,DZIP1,FARP1,GPC5,GPC6,GPR180,HS6ST3,IPO5,MBNL2,OXGR1,RAP2A,RNF113B,SLC15A1,SOX21,STK24,TGDS,UBAC2,UGGT2"
TCGA.AA.3930.01A	13	92380738	115089311	1034	0.4372	SMALL-GAIN	NONFOCAL	88	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3844	13	94925091	97291475	804	0.4271	SMALL-GAIN	NONFOCAL	11	"ABCC4,CLDN10,DCT,DNAJC3,DZIP1,GPC6,GPR180,HS6ST3,SOX21,TGDS,UGGT2"
TCGA.AA.3811	13	94936118	101426678	2206	0.4944	SMALL-GAIN	NONFOCAL	30	"ABCC4,CLDN10,CLYBL,DCT,DNAJC3,DOCK9,DZIP1,FARP1,GGACT,GPC6,GPR18,GPR180,GPR183,HS6ST3,IPO5,MBNL2,OXGR1,PCCA,RAP2A,RNF113B,SLC15A1,SOX21,STK24,TGDS,TM9SF2,TMTC4,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.D5.6533	13	95164549	115106995	8112	0.3857	SMALL-GAIN	NONFOCAL	85	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.CA.5254	13	95356731	101283496	1987	0.4679	SMALL-GAIN	NONFOCAL	26	"ABCC4,CLDN10,CLYBL,DNAJC3,DOCK9,DZIP1,FARP1,GGACT,GPR18,GPR183,HS6ST3,IPO5,MBNL2,OXGR1,PCCA,RAP2A,RNF113B,SLC15A1,SOX21,STK24,TM9SF2,TMTC4,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AF.2691	13	95636193	114011248	7740	0.4353	SMALL-GAIN	NONFOCAL	68	"ABCC4,ABHD13,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GGACT,GPR18,GPR183,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TM9SF2,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,ZIC2,ZIC5"
TCGA.AA.3527	13	95636193	115106995	7933	0.4459	SMALL-GAIN	NONFOCAL	82	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3532	13	95636193	115106995	7937	0.5636	SMALL-GAIN	NONFOCAL	82	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3534	13	95636193	115106995	7935	0.4607	SMALL-GAIN	NONFOCAL	82	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3488	13	96300936	115106995	7629	0.5533	SMALL-GAIN	NONFOCAL	79	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AA.A00Q.01A	13	96375449	99338394	124	0.4472	SMALL-GAIN	NONFOCAL	11	"DNAJC3,FARP1,HS6ST3,IPO5,MBNL2,OXGR1,RAP2A,RNF113B,SLC15A1,STK24,UGGT2"
TCGA.AA.3968	13	97382369	115106995	7417	0.5387	SMALL-GAIN	NONFOCAL	77	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3955	13	97400814	101510127	1424	0.6299	SMALL-GAIN	NONFOCAL	20	"CLYBL,DOCK9,FARP1,GGACT,GPR18,GPR183,HS6ST3,IPO5,MBNL2,OXGR1,PCCA,RAP2A,RNF113B,SLC15A1,STK24,TM9SF2,TMTC4,UBAC2,ZIC2,ZIC5"
TCGA.AA.3844	13	97645269	101405982	1309	0.5802	SMALL-GAIN	NONFOCAL	19	"CLYBL,DOCK9,FARP1,GGACT,GPR18,GPR183,IPO5,MBNL2,OXGR1,PCCA,RAP2A,RNF113B,SLC15A1,STK24,TM9SF2,TMTC4,UBAC2,ZIC2,ZIC5"
TCGA.AZ.5403	13	98538298	115106995	7042	0.3837	SMALL-GAIN	NONFOCAL	73	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.G5.6572	13	99247625	115106995	6729	0.6685	SMALL-GAIN	NONFOCAL	69	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RASA3,SLC10A2,SLC15A1,SOX1,SPACA7,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UPF3A,ZIC2,ZIC5"
TCGA.AA.3939.01A	13	99457221	111111086	414	0.4095	SMALL-GAIN	NONFOCAL	34	"ABHD13,ARGLU1,BIVM,BIVM-ERCC5,CCDC168,CLYBL,COL4A1,COL4A2,DAOA,DOCK9,EFNB2,ERCC5,FAM155A,FGF14,GGACT,GPR18,GPR183,IRS2,ITGBL1,KDELC1,LIG4,METTL21C,MYO16,NALCN,PCCA,SLC10A2,TEX30,TM9SF2,TMTC4,TNFSF13B,TPP2,UBAC2,ZIC2,ZIC5"
TCGA.AA.3955	13	101522969	105805905	2085	0.5091	SMALL-GAIN	NONFOCAL	12	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,FGF14,ITGBL1,KDELC1,METTL21C,NALCN,SLC10A2,TEX30,TPP2"
TCGA.AA.3842	13	102155536	114086431	5450	0.6682	SMALL-GAIN	NONFOCAL	44	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,COL4A1,COL4A2,CUL4A,DAOA,EFNB2,ERCC5,F10,F7,FAM155A,FGF14,GRTP1,ING1,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LOC101928841,MCF2L,METTL21C,MYO16,PCID2,PROZ,RAB20,SLC10A2,SOX1,SPACA7,TEX29,TEX30,TNFSF13B,TPP2,TUBGCP3"
TCGA.AZ.4684.01A	13	103418703	108861671	64	0.4399	SMALL-GAIN	NONFOCAL	11	"ARGLU1,BIVM,BIVM-ERCC5,DAOA,EFNB2,ERCC5,FAM155A,KDELC1,LIG4,SLC10A2,TEX30"
TCGA.AA.A00D.01A	13	103524519	110861115	99	0.4764	SMALL-GAIN	NONFOCAL	13	"ABHD13,ARGLU1,BIVM-ERCC5,COL4A1,DAOA,EFNB2,ERCC5,FAM155A,IRS2,LIG4,MYO16,SLC10A2,TNFSF13B"
TCGA.A6.3808.01A	13	103698433	111110401	134	0.4733	SMALL-GAIN	NONFOCAL	12	"ABHD13,ARGLU1,COL4A1,COL4A2,DAOA,EFNB2,FAM155A,IRS2,LIG4,MYO16,SLC10A2,TNFSF13B"
TCGA.F4.6459	13	104566838	111662045	3450	0.6588	SMALL-GAIN	NONFOCAL	16	"ABHD13,ANKRD10,ARGLU1,CARKD,CARS2,COL4A1,COL4A2,DAOA,EFNB2,FAM155A,ING1,IRS2,LIG4,MYO16,RAB20,TNFSF13B"
TCGA.F5.6864	13	105192857	115106995	4187	0.6107	SMALL-GAIN	NONFOCAL	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AG.3887	13	105448971	111584452	3001	0.4142	SMALL-GAIN	NONFOCAL	16	"ABHD13,ANKRD10,ARGLU1,CARKD,CARS2,COL4A1,COL4A2,DAOA,EFNB2,FAM155A,ING1,IRS2,LIG4,MYO16,RAB20,TNFSF13B"
TCGA.AA.3955	13	105810792	115106995	3892	0.5548	SMALL-GAIN	NONFOCAL	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.DM.A1D4	13	106033383	115106995	3808	0.4572	SMALL-GAIN	NONFOCAL	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.EI.6510	13	106133157	115106995	3746	0.472	SMALL-GAIN	NONFOCAL	45	"ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,EFNB2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.3697	13	107750760	115106995	2970	0.5831	SMALL-GAIN	NONFOCAL	42	"ABHD13,ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AG.4009.01A	13	107822906	111340046	146	0.4882	SMALL-GAIN	NONFOCAL	11	"ABHD13,CARKD,CARS2,COL4A1,COL4A2,FAM155A,IRS2,LIG4,MYO16,RAB20,TNFSF13B"
TCGA.DY.A1DC	13	108630284	115106995	2533	0.6699	SMALL-GAIN	NONFOCAL	41	"ABHD13,ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3,UPF3A"
TCGA.AA.3811	13	109591039	115106995	2033	0.5237	SMALL-GAIN	NONFOCAL	38	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LINC00452,LOC101928841,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.3982	13	110293456	115106995	1716	0.4689	SMALL-GAIN	NONFOCAL	37	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.DC.5869	13	110342218	115106995	1688	0.3898	SMALL-GAIN	NONFOCAL	37	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.G4.6299	13	110678774	115106995	1560	0.5167	SMALL-GAIN	NONFOCAL	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.A02H.01A	13	110833607	115089311	311	0.5921	SMALL-GAIN	NONFOCAL	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.3844	13	110947632	115106995	1414	0.6387	SMALL-GAIN	NONFOCAL	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AD.6963	13	112349868	115106995	707	0.5048	SMALL-GAIN	NONFOCAL	27	"ADPRHL1,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.F5.6464	13	112611288	115106995	650	0.4803	SMALL-GAIN	NONFOCAL	27	"ADPRHL1,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SOX1,SPACA7,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.G4.6311	13	112977927	115106995	536	0.6379	SMALL-GAIN	NONFOCAL	26	"ADPRHL1,ATP11A,ATP11AUN,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,SPACA7,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AZ.6605	13	113379929	115106995	375	0.5151	SMALL-GAIN	NONFOCAL	23	"ADPRHL1,ATP11A,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.CA.5254	13	113533875	115106995	331	0.4456	SMALL-GAIN	NONFOCAL	23	"ADPRHL1,ATP11A,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.EF.5830	13	113781606	114752856	189	0.5443	SMALL-GAIN	NONFOCAL	17	"ADPRHL1,ATP4B,CUL4A,DCUN1D2,F10,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B"
TCGA.AG.A016.01A	13	113798146	115089311	137	0.6373	SMALL-GAIN	NONFOCAL	20	"ADPRHL1,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AG.4009.01A	13	113897235	114507823	70	0.4163	SMALL-GAIN	NONFOCAL	11	"ADPRHL1,ATP4B,CUL4A,DCUN1D2,GRK1,GRTP1,LAMP1,LOC101928841,TFDP1,TMCO3,TMEM255B"
TCGA.AF.2691	13	114087600	115106995	182	0.4551	SMALL-GAIN	NONFOCAL	13	"ADPRHL1,ATP4B,CDC16,CHAMP1,DCUN1D2,GAS6,GRK1,LINC00452,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AG.A025.01A	14	19377557	20768798	28	0.4391	SMALL-GAIN	NONFOCAL	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AG.A01J.01A	14	19377557	20769945	29	0.4038	SMALL-GAIN	NONFOCAL	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AA.A00N.01A	14	20215595	20611853	12	0.656	SMALL-GAIN	NONFOCAL	11	"OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4Q3"
TCGA.AF.3914.01A	14	20215595	21468202	137	0.4216	SMALL-GAIN	NONFOCAL	39	"ANG,APEX1,CCNB1IP1,EDDM3A,EDDM3B,KLHL33,METTL17,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,OR6S1,OSGEP,PARP2,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE2,RNASE3,RNASE4,RNASE6,RNASE9,SLC39A2,TEP1,TMEM55B,TTC5"
TCGA.AA.3851	14	20224002	22479596	824	0.4057	SMALL-GAIN	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.G4.6626	14	20224002	83467226	20054	0.4419	SMALL-GAIN	NONFOCAL	434	Too-Many
TCGA.AG.A01Y	14	20224002	92371140	22846	0.4821	SMALL-GAIN	NONFOCAL	459	Too-Many
TCGA.AA.A02O	14	20224002	107285436	27534	0.426	SMALL-GAIN	NONFOCAL	583	Too-Many
TCGA.AA.3941	14	20645915	22338140	664	0.6205	SMALL-GAIN	NONFOCAL	47	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.A00D.01A	14	21024611	35295202	765	0.4364	SMALL-GAIN	NONFOCAL	137	Too-Many
TCGA.AA.A010.01A	14	21698400	23415717	184	0.5749	SMALL-GAIN	NONFOCAL	22	"ABHD4,CHD8,DAD1,HAUS4,HNRNPC,LRP10,METTL3,MMP14,MRPL52,OR10G2,OR10G3,OR4E2,OXA1L,PRMT5,RAB2B,RBM23,REM2,RPGRIP1,SALL2,SLC7A7,SUPT16H,TOX4"
TCGA.AA.3850	14	22698980	23960757	434	0.48135	SMALL-GAIN	NONFOCAL	33	"ABHD4,ACIN1,AJUBA,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CMTM5,DAD1,EFS,HAUS4,HOMEZ,IL25,LRP10,MMP14,MRPL52,MYH6,MYH7,NGDN,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A7,SLC7A8"
TCGA.AA.3952	14	23091695	62727662	12288	0.424	SMALL-GAIN	NONFOCAL	228	Too-Many
TCGA.AG.A01W.01A	14	24113671	29169668	36	0.4874	SMALL-GAIN	NONFOCAL	45	"ADCY4,CBLN3,CHMP4A,CIDEB,CMA1,CPNE6,CTSG,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,GZMB,GZMH,IPO4,IRF9,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,NEDD8,NEDD8-MDP1,NFATC4,NOP9,NOVA1,NRL,NYNRIN,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,SDR39U1,STXBP6,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.A6.6780	14	24601464	75699437	15685	0.3996	SMALL-GAIN	NONFOCAL	291	Too-Many
TCGA.AA.A010.01A	14	24641723	24739992	71	0.3936	SMALL-GAIN	NONFOCAL	12	"CHMP4A,GMPR2,IPO4,MDP1,NEDD8,NEDD8-MDP1,RABGGTA,REC8,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.A6.5667	14	28741089	50797605	6301	0.5661	SMALL-GAIN	NONFOCAL	73	"AKAP6,AP4S1,ARF6,ARHGAP5,ATP5S,BAZ1A,BRMS1L,C14orf28,CDKL1,CFL2,CLEC14A,COCH,CTAGE5,DNAAF2,DTD2,EAPP,EGLN3,FAM177A1,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FOXG1,FSCB,G2E3,GEMIN2,GPR33,HEATR5A,HECTD1,INSM2,KIAA0391,KLHDC1,KLHDC2,KLHL28,L2HGDH,LRFN5,LRR1,MBIP,MDGA2,MGAT2,MIA2,MIPOL1,MIS18BP1,NEMF,NFKBIA,NKX2-1,NKX2-8,NPAS3,NUBPL,PAX9,PNN,POLE2,PPP2R3C,PRKD1,PRPF39,PSMA6,RALGAPA1,RPL10L,RPL36AL,RPS29,SCFD1,SEC23A,SFTA3,SLC25A21,SNX6,SOS2,SPTSSA,SRP54,SSTR1,STRN3,TRAPPC6B,VCPKMT"
TCGA.AA.A00A.01A	14	31813065	35343661	76	0.4041	SMALL-GAIN	NONFOCAL	13	"AKAP6,ARHGAP5,BAZ1A,CFL2,DTD2,EAPP,EGLN3,GPR33,HEATR5A,NPAS3,NUBPL,SNX6,SPTSSA"
TCGA.A6.6649	14	34205409	36582419	643	0.6074	SMALL-GAIN	NONFOCAL	16	"BAZ1A,BRMS1L,CFL2,EAPP,EGLN3,FAM177A1,INSM2,KIAA0391,NFKBIA,NPAS3,PPP2R3C,PSMA6,RALGAPA1,SNX6,SPTSSA,SRP54"
TCGA.AZ.4684.01A	14	35871196	39532472	128	0.4217	SMALL-GAIN	NONFOCAL	15	"BRMS1L,CLEC14A,FOXA1,INSM2,MBIP,MIPOL1,NFKBIA,NKX2-1,NKX2-8,PAX9,RALGAPA1,SEC23A,SFTA3,SLC25A21,SSTR1"
TCGA.AA.A00D.01A	14	36334072	39502390	58	0.5759	SMALL-GAIN	NONFOCAL	12	"BRMS1L,CLEC14A,FOXA1,MBIP,MIPOL1,NKX2-1,NKX2-8,PAX9,SEC23A,SFTA3,SLC25A21,SSTR1"
TCGA.AA.3509.01A	14	36334911	39530930	72	0.4176	SMALL-GAIN	NONFOCAL	12	"BRMS1L,CLEC14A,FOXA1,MBIP,MIPOL1,NKX2-1,NKX2-8,PAX9,SEC23A,SFTA3,SLC25A21,SSTR1"
TCGA.AA.A00A.01A	14	37149794	51096619	347	0.5225	SMALL-GAIN	NONFOCAL	40	"ARF6,ATL1,ATP5S,C14orf28,CDKL1,CLEC14A,CTAGE5,DNAAF2,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FSCB,GEMIN2,KLHDC1,KLHDC2,KLHL28,L2HGDH,LRFN5,LRR1,MAP4K5,MDGA2,MGAT2,MIA2,MIPOL1,MIS18BP1,NEMF,PNN,POLE2,PRPF39,RPL10L,RPL36AL,RPS29,SEC23A,SLC25A21,SOS2,SSTR1,TRAPPC6B,VCPKMT"
TCGA.AA.A00D.01A	14	39788363	45715909	105	0.6307	SMALL-GAIN	NONFOCAL	11	"C14orf28,CTAGE5,FAM179B,FANCM,FBXO33,FKBP3,FSCB,KLHL28,LRFN5,MIS18BP1,PRPF39"
TCGA.A6.6649	14	41876604	51830365	2621	0.4908	SMALL-GAIN	NONFOCAL	34	"ABHD12B,ARF6,ATL1,ATP5S,C14orf28,CDKL1,DNAAF2,FAM179B,FANCM,FKBP3,FSCB,KLHDC1,KLHDC2,KLHL28,L2HGDH,LRFN5,LRR1,MAP4K5,MDGA2,MGAT2,MIS18BP1,NEMF,NIN,POLE2,PRPF39,PYGL,RPL10L,RPL36AL,RPS29,SAV1,SOS2,TMX1,TRIM9,VCPKMT"
TCGA.G4.6307	14	45897410	107285436	19608	0.4552	SMALL-GAIN	NONFOCAL	387	Too-Many
TCGA.AA.3850	14	49960241	50875827	238	0.41555	SMALL-GAIN	NONFOCAL	15	"ARF6,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SOS2,VCPKMT"
TCGA.AA.3831	14	50048071	50610730	134	0.4393	SMALL-GAIN	NONFOCAL	12	"ARF6,DNAAF2,KLHDC1,KLHDC2,LRR1,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SOS2,VCPKMT"
TCGA.A6.3808.01A	14	50895888	53100211	187	0.4741	SMALL-GAIN	NONFOCAL	16	"ABHD12B,ATL1,C14orf166,FRMD6,GNG2,GPR137C,MAP4K5,NID2,NIN,PTGDR,PTGER2,PYGL,SAV1,TMX1,TRIM9,TXNDC16"
TCGA.AA.A00D.01A	14	51273396	52955029	96	0.4125	SMALL-GAIN	NONFOCAL	12	"ABHD12B,C14orf166,FRMD6,GNG2,NID2,NIN,PTGDR,PTGER2,PYGL,TMX1,TRIM9,TXNDC16"
TCGA.AA.A00A.01A	14	51273396	53385794	154	0.4255	SMALL-GAIN	NONFOCAL	18	"ABHD12B,C14orf166,ERO1L,FERMT2,FRMD6,GNG2,GNPNAT1,GPR137C,NID2,NIN,PSMC6,PTGDR,PTGER2,PYGL,STYX,TMX1,TRIM9,TXNDC16"
TCGA.A6.6649	14	54459203	56476010	673	0.5806	SMALL-GAIN	NONFOCAL	15	"ATG14,CDKN3,CGRRF1,CNIH1,DLGAP5,FBXO34,GCH1,GMFB,KTN1,LGALS3,MAPK1IP1L,SAMD4A,SOCS4,TBPL2,WDHD1"
TCGA.AA.3941	14	54661896	56081128	432	0.6273	SMALL-GAIN	NONFOCAL	15	"ATG14,CDKN3,CGRRF1,CNIH1,DLGAP5,FBXO34,GCH1,GMFB,KTN1,LGALS3,MAPK1IP1L,SAMD4A,SOCS4,TBPL2,WDHD1"
TCGA.AA.A00A.01A	14	54866562	62261618	395	0.4751	SMALL-GAIN	NONFOCAL	51	"ACTR10,AP5M1,ARID4A,ATG14,C14orf105,C14orf37,C14orf39,CCDC175,CDKN3,CGRRF1,CNIH1,DAAM1,DACT1,DHRS7,DLGAP5,EXOC5,FBXO34,GCH1,GMFB,GPR135,HIF1A,JKAMP,KIAA0586,KTN1,L3HYPDH,LGALS3,MAPK1IP1L,MNAT1,NAA30,OTX2,PCNXL4,PELI2,PPM1A,PRKCH,PSMA3,RTN1,SAMD4A,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SOCS4,TBPL2,TIMM9,TMEM260,TMEM30B,TOMM20L,TRMT5,WDHD1"
TCGA.AA.A00D.01A	14	54950341	57876050	165	0.5196	SMALL-GAIN	NONFOCAL	19	"AP5M1,ATG14,CGRRF1,DLGAP5,EXOC5,FBXO34,GCH1,GMFB,KTN1,LGALS3,MAPK1IP1L,NAA30,OTX2,PELI2,SAMD4A,SOCS4,TBPL2,TMEM260,WDHD1"
TCGA.A6.3808.01A	14	56084631	58669523	110	0.5303	SMALL-GAIN	NONFOCAL	11	"ACTR10,AP5M1,C14orf105,C14orf37,EXOC5,KTN1,NAA30,OTX2,PELI2,SLC35F4,TMEM260"
TCGA.AZ.4684.01A	14	56113610	58666874	98	0.4233	SMALL-GAIN	NONFOCAL	11	"ACTR10,AP5M1,C14orf105,C14orf37,EXOC5,KTN1,NAA30,OTX2,PELI2,SLC35F4,TMEM260"
TCGA.AA.A00D.01A	14	58666874	62188200	178	0.5885	SMALL-GAIN	NONFOCAL	26	"ACTR10,ARID4A,C14orf39,CCDC175,DAAM1,DACT1,DHRS7,GPR135,HIF1A,JKAMP,KIAA0586,L3HYPDH,MNAT1,PCNXL4,PPM1A,PRKCH,PSMA3,RTN1,SIX1,SIX4,SIX6,SLC38A6,TIMM9,TMEM30B,TOMM20L,TRMT5"
TCGA.A6.6649	14	58834391	61070369	661	0.3931	SMALL-GAIN	NONFOCAL	16	"ARID4A,C14orf39,CCDC175,DAAM1,DACT1,DHRS7,GPR135,JKAMP,KIAA0586,L3HYPDH,PCNXL4,PPM1A,RTN1,SIX6,TIMM9,TOMM20L"
TCGA.AA.A00D.01A	14	64542622	70177612	416	0.467	SMALL-GAIN	NONFOCAL	42	"ACTN1,AKAP5,ARG2,ATP6V1D,CCDC177,CHURC1,CHURC1-FNTB,DCAF5,EIF2S1,ERH,ESR2,EXD2,FAM71D,FNTB,FUT8,GALNT16,GPHN,GPX2,HSPA2,MAX,MPP5,MTHFD1,PIGH,PLEK2,PLEKHD1,PLEKHG3,PLEKHH1,PPP1R36,RAB15,RAD51B,RDH11,RDH12,SLC39A9,SPTB,SUSD6,SYNE2,TMEM229B,VTI1B,ZBTB1,ZBTB25,ZFP36L1,ZFYVE26"
TCGA.AA.A00A.01A	14	64542622	73542955	574	0.3817	SMALL-GAIN	NONFOCAL	61	"ACTN1,ADAM20,ADAM21,AKAP5,ARG2,ATP6V1D,CCDC177,CHURC1,CHURC1-FNTB,COX16,DCAF4,DCAF5,DPF3,EIF2S1,ERH,ESR2,EXD2,FAM71D,FNTB,FUT8,GALNT16,GPHN,GPX2,HSPA2,MAP3K9,MAX,MED6,MPP5,MTHFD1,PCNX,PIGH,PLEK2,PLEKHD1,PLEKHG3,PLEKHH1,PPP1R36,RAB15,RAD51B,RBM25,RDH11,RDH12,RGS6,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SPTB,SRSF5,SUSD6,SYNE2,SYNJ2BP,SYNJ2BP-COX16,TMEM229B,TTC9,VTI1B,ZBTB1,ZBTB25,ZFP36L1,ZFYVE1,ZFYVE26"
TCGA.AA.A010.01A	14	67490270	69529069	195	0.515	SMALL-GAIN	NONFOCAL	18	"ACTN1,ARG2,ATP6V1D,DCAF5,EIF2S1,FAM71D,GPHN,MPP5,PIGH,PLEK2,PLEKHH1,RAD51B,RDH11,RDH12,TMEM229B,VTI1B,ZFP36L1,ZFYVE26"
TCGA.EI.6512	14	67812473	68699593	241	0.6552	SMALL-GAIN	NONFOCAL	12	"ARG2,ATP6V1D,EIF2S1,PIGH,PLEK2,PLEKHH1,RAD51B,RDH11,RDH12,TMEM229B,VTI1B,ZFYVE26"
TCGA.AA.3941	14	68595834	72425990	1233	0.5738	SMALL-GAIN	NONFOCAL	26	"ACTN1,ADAM20,ADAM21,CCDC177,COX16,DCAF5,ERH,EXD2,GALNT16,MAP3K9,MED6,PCNX,PLEKHD1,RAD51B,RGS6,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SRSF5,SUSD6,SYNJ2BP,SYNJ2BP-COX16,TTC9,ZFP36L1"
TCGA.AA.A00D.01A	14	73732047	74325498	49	0.5921	SMALL-GAIN	NONFOCAL	12	"ACOT1,ACOT2,ACOT4,ACOT6,C14orf169,DNAL1,ELMSAN1,HEATR4,NUMB,PAPLN,PNMA1,PTGR2"
TCGA.AA.A00D.01A	14	74360468	74961502	91	0.6046	SMALL-GAIN	NONFOCAL	13	"ABCD4,ALDH6A1,CCDC176,COQ6,ENTPD5,FAM161B,ISCA2,LIN52,NPC2,SYNDIG1L,VRTN,VSX2,ZNF410"
TCGA.AA.A00D.01A	14	75179815	75576340	77	0.5538	SMALL-GAIN	NONFOCAL	11	"ACYP1,DLST,EIF2B2,FCF1,MLH3,NEK9,PGF,PROX2,RPS6KL1,YLPM1,ZC2HC1C"
TCGA.AA.A00D.01A	14	75614302	77812662	152	0.4264	SMALL-GAIN	NONFOCAL	22	"ANGEL1,BATF,C14orf1,CIPC,ESRRB,FLVCR2,FOS,GPATCH2L,GSTZ1,IFT43,IRF2BPL,JDP2,LRRC74A,NGB,POMT2,TGFB3,TMED10,TMED8,TMEM63C,TTLL5,VASH1,ZDHHC22"
TCGA.AA.3941	14	88567916	94630730	1990	0.6522	SMALL-GAIN	NONFOCAL	47	"ASB2,ATXN3,BTBD7,C14orf142,C14orf159,CALM1,CATSPERB,CCDC88C,CHGA,COX8C,CPSF2,DDX24,EFCAB11,EML5,FAM181A,FBLN5,FOXN3,GOLGA5,GPR68,IFI27,IFI27L1,IFI27L2,ITPK1,KCNK10,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,OTUB2,PRIMA1,PSMC1,PTPN21,RIN3,RPS6KA5,SLC24A4,SMEK1,SPATA7,TC2N,TDP1,TMEM251,TRIP11,TTC7B,TTC8,UBR7,UNC79,ZC3H14"
TCGA.AA.A00D.01A	14	89069125	92555028	218	0.4304	SMALL-GAIN	NONFOCAL	21	"ATXN3,C14orf159,CALM1,CATSPERB,CCDC88C,EFCAB11,EML5,FBLN5,FOXN3,GPR68,KCNK13,NRDE2,PSMC1,RPS6KA5,SMEK1,TC2N,TDP1,TRIP11,TTC7B,TTC8,ZC3H14"
TCGA.AA.A00A.01A	14	90866338	95910774	453	0.3876	SMALL-GAIN	NONFOCAL	50	"ASB2,ATXN3,BTBD7,C14orf142,C14orf159,CALM1,CATSPERB,CCDC88C,CHGA,CLMN,COX8C,CPSF2,DDX24,DICER1,FAM181A,FBLN5,GOLGA5,GPR68,GSC,IFI27,IFI27L1,IFI27L2,ITPK1,LGMN,MOAP1,NDUFB1,OTUB2,PPP4R4,PRIMA1,RIN3,RPS6KA5,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SLC24A4,SMEK1,SYNE3,TC2N,TMEM251,TRIP11,TTC7B,UBR7,UNC79"
TCGA.AG.A01Y	14	92390619	94421666	698	0.3953	SMALL-GAIN	NONFOCAL	21	"ASB2,ATXN3,BTBD7,C14orf142,CHGA,COX8C,CPSF2,FAM181A,FBLN5,GOLGA5,ITPK1,LGMN,MOAP1,NDUFB1,PRIMA1,RIN3,SLC24A4,TMEM251,TRIP11,UBR7,UNC79"
TCGA.A6.3808.01A	14	93708990	95058393	159	0.5819	SMALL-GAIN	NONFOCAL	21	"ASB2,BTBD7,COX8C,DDX24,FAM181A,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA4,SERPINA5,SERPINA6,SERPINA9,UNC79"
TCGA.AG.A01Y	14	94424035	107145271	3900	0.381	SMALL-GAIN	NONFOCAL	105	Too-Many
TCGA.AA.A00N.01A	14	94563207	95941963	131	0.5803	SMALL-GAIN	NONFOCAL	18	"CLMN,DICER1,GSC,IFI27,IFI27L1,IFI27L2,PPP4R4,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3"
TCGA.AA.3941	14	94713389	96764582	1075	0.6246	SMALL-GAIN	NONFOCAL	22	"ATG2B,BDKRB1,BDKRB2,C14orf132,CLMN,DICER1,GLRX5,GSC,PPP4R4,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,TCL1A,TCL1B"
TCGA.AA.A00D.01A	14	96010237	103599708	416	0.5658	SMALL-GAIN	NONFOCAL	45	"AK7,AMN,ANKRD9,ATG2B,BCL11B,BDKRB1,BDKRB2,BEGAIN,C14orf132,C14orf177,CCDC85C,CCNK,CDC42BPB,CINP,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EML1,EVL,EXOC3L4,GLRX5,GSKIP,HHIPL1,HSP90AA1,MOK,PAPOLA,PPP2R5C,RCOR1,RTL1,SETD3,SLC25A29,SLC25A47,TCL1A,TCL1B,TECPR2,TNFAIP2,TRAF3,VRK1,WARS,WDR20,WDR25,YY1,ZNF839"
TCGA.AA.A00A.01A	14	96128872	100992158	189	0.4348	SMALL-GAIN	NONFOCAL	25	"AK7,ATG2B,BCL11B,BDKRB1,BDKRB2,C14orf132,C14orf177,CCDC85C,CCNK,CYP46A1,DEGS2,EML1,EVL,GSKIP,HHIPL1,PAPOLA,SETD3,SLC25A29,SLC25A47,TCL1A,TCL1B,VRK1,WARS,WDR25,YY1"
TCGA.AF.3913	14	100638234	107285436	1118	0.4271	SMALL-GAIN	NONFOCAL	63	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BEGAIN,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DLK1,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.A00A.01A	14	101512198	105204648	266	0.3999	SMALL-GAIN	NONFOCAL	35	"ADSSL1,AMN,ANKRD9,APOPT1,ASPG,BAG5,C14orf180,C14orf2,CDC42BPB,CINP,CKB,DIO3,DYNC1H1,EIF5,EXOC3L4,HSP90AA1,INF2,KIF26A,KLC1,MARK3,MOK,PPP1R13B,PPP2R5C,RCOR1,RD3L,TDRD9,TECPR2,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZFYVE21,ZNF839"
TCGA.5M.AAT4	14	101911710	107231966	732	0.4122	SMALL-GAIN	NONFOCAL	55	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.AG.3881	14	103351528	106912036	447	0.3825	SMALL-GAIN	NONFOCAL	44	"ADSSL1,AHNAK2,AKT1,AMN,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CKB,CRIP1,CRIP2,EIF5,EXOC3L4,GPR132,INF2,JAG2,KIF26A,KLC1,MARK3,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,XRCC3,ZBTB42,ZFYVE21"
TCGA.AA.A00D.01A	14	104441678	107034732	88	0.5029	SMALL-GAIN	NONFOCAL	27	"ADSSL1,AHNAK2,AKT1,ASPG,BRF1,BTBD6,C14orf180,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,MTA1,NUDT14,PACS2,PLD4,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,ZBTB42"
TCGA.AM.5820	14	104548680	106328826	194	0.5379	SMALL-GAIN	NONFOCAL	26	"ADSSL1,AHNAK2,AKT1,ASPG,BRF1,BTBD6,C14orf180,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,MTA1,NUDT14,PACS2,PLD4,SIVA1,TEX22,TMEM121,TMEM179,ZBTB42"
TCGA.AA.3534	15	20143408	102400036	25500	0.4507	SMALL-GAIN	NONFOCAL	566	Too-Many
TCGA.DM.A1DB	15	20143408	102400036	25505	0.4168	SMALL-GAIN	NONFOCAL	566	Too-Many
TCGA.D5.6929	15	20556429	32931903	2666	0.477	SMALL-GAIN	NONFOCAL	47	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,CYFIP1,FAM189A1,FAN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,HERC2,KLF13,LOC283710,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,OR4M2,OR4N4,OTUD7A,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AA.A00L.01A	15	20588543	23062209	60	0.6385	SMALL-GAIN	NONFOCAL	12	"CYFIP1,GOLGA6L1,GOLGA6L22,GOLGA6L6,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AY.6196	15	22766684	35113723	3647	0.3995	SMALL-GAIN	NONFOCAL	58	"ACTC1,APBA2,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L2,GOLGA6L22,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AA.A00A.01A	15	22939124	31229275	202	0.388	SMALL-GAIN	NONFOCAL	29	"APBA2,ARHGAP11B,ATP10A,CHRFAM7A,CYFIP1,FAM189A1,FAN1,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,MAGEL2,MKRN3,NDN,NDNL2,NIPA1,NIPA2,NPAP1,OCA2,SNRPN,SNURF,TJP1,UBE3A"
TCGA.AA.A00L.01A	15	24925809	33024481	222	0.4263	SMALL-GAIN	NONFOCAL	33	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,FAM189A1,FAN1,GABRA5,GABRB3,GABRG3,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MTMR10,NDNL2,NPAP1,OCA2,OTUD7A,SCG5,SNRPN,SNURF,TJP1,TRPM1,UBE3A"
TCGA.AA.3941	15	25415167	33830009	2544	0.4144	SMALL-GAIN	NONFOCAL	32	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MTMR10,NDNL2,OCA2,OTUD7A,RYR3,SCG5,TJP1,TRPM1,UBE3A"
TCGA.EI.6513	15	26059591	31036190	1327	0.4422	SMALL-GAIN	NONFOCAL	16	"APBA2,ARHGAP11B,ATP10A,CHRFAM7A,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,NDNL2,OCA2,TJP1"
TCGA.AA.A00Q.01A	15	26792950	34651331	258	0.4247	SMALL-GAIN	NONFOCAL	40	"APBA2,ARHGAP11A,ARHGAP11B,AVEN,CHRFAM7A,CHRM5,CHRNA7,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MTMR10,NDNL2,NOP10,NUTM1,OCA2,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,TJP1,TRPM1"
TCGA.AA.A010.01A	15	27271843	31664161	229	0.4213	SMALL-GAIN	NONFOCAL	18	"APBA2,ARHGAP11B,CHRFAM7A,FAM189A1,FAN1,GABRG3,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,KLF13,LOC283710,MTMR10,NDNL2,OCA2,TJP1,TRPM1"
TCGA.AG.3584	15	30239906	40464980	3515	0.3869	SMALL-GAIN	NONFOCAL	53	"ACTC1,AQR,ARHGAP11A,ARHGAP11B,AVEN,BMF,BUB1B,C15orf41,C15orf53,C15orf54,CHRFAM7A,CHRM5,CHRNA7,DPH6,EIF2AK4,EMC4,EMC7,FAM98B,FAN1,FMN1,FSIP1,GJD2,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,KATNBL1,KLF13,LOC283710,LPCAT4,MEIS2,MTMR10,NOP10,NUTM1,OTUD7A,PGBD4,RASGRP1,RYR3,SCG5,SLC12A6,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,ZNF770"
TCGA.AA.A01Z	15	31700021	35767286	1453	0.5256	SMALL-GAIN	NONFOCAL	28	"ACTC1,AQR,ARHGAP11A,AVEN,CHRM5,CHRNA7,DPH6,EMC4,EMC7,FMN1,GJD2,GOLGA8A,GOLGA8B,GOLGA8K,GOLGA8N,GOLGA8O,GREM1,KATNBL1,KLF13,LPCAT4,NOP10,NUTM1,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,ZNF770"
TCGA.AA.3941	15	33908618	34893263	325	0.4879	SMALL-GAIN	NONFOCAL	13	"AVEN,CHRM5,EMC4,EMC7,GOLGA8A,GOLGA8B,KATNBL1,LPCAT4,NOP10,NUTM1,PGBD4,RYR3,SLC12A6"
TCGA.AA.A00L.01A	15	34113464	34651740	70	0.5701	SMALL-GAIN	NONFOCAL	11	"AVEN,CHRM5,EMC4,EMC7,KATNBL1,LPCAT4,NOP10,NUTM1,PGBD4,RYR3,SLC12A6"
TCGA.AA.A00A.01A	15	34157281	41549047	338	0.4554	SMALL-GAIN	NONFOCAL	63	"ACTC1,ANKRD63,AQR,AVEN,BAHD1,BMF,BUB1B,C15orf41,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHRM5,CHST14,DISP2,DLL4,DNAJC17,DPH6,EIF2AK4,EMC4,EMC7,EXD1,FAM98B,FSIP1,GCHFR,GJD2,GOLGA8A,GOLGA8B,GPR176,INAFM2,INO80,IVD,KATNBL1,KNSTRN,LPCAT4,MEIS2,NOP10,NUTM1,PAK6,PGBD4,PHGR1,PLCB2,PPP1R14D,RAD51,RASGRP1,RHOV,RMDN3,RPUSD2,RYR3,SLC12A6,SPINT1,SPRED1,SRP14,THBS1,TMCO5A,VPS18,ZFYVE19,ZNF770"
TCGA.AA.3941	15	40176195	42573066	513	0.6343	SMALL-GAIN	NONFOCAL	56	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DISP2,DLL4,DNAJC17,EHD4,EIF2AK4,EXD1,GANC,GCHFR,GPR176,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,PAK6,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SPINT1,SPTBN5,SRP14,TMEM87A,TYRO3,VPS18,VPS39,ZFYVE19"
TCGA.AA.3850	15	40293529	42496918	464	0.44445	SMALL-GAIN	NONFOCAL	53	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf56,C15orf57,C15orf62,CASC5,CHAC1,CHP1,CHST14,DISP2,DLL4,DNAJC17,EHD4,EIF2AK4,EXD1,GCHFR,INAFM2,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,PAK6,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RPUSD2,RTF1,SPINT1,SPTBN5,SRP14,TYRO3,VPS18,VPS39,ZFYVE19"
TCGA.AA.3872	15	40929813	42579109	329	0.6354	SMALL-GAIN	NONFOCAL	37	"C15orf62,CASC5,CHAC1,CHP1,DLL4,DNAJC17,EHD4,EXD1,GANC,GCHFR,INO80,ITPKA,JMJD7,JMJD7-PLA2G4B,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RTF1,SPINT1,SPTBN5,TMEM87A,TYRO3,VPS18,VPS39,ZFYVE19"
TCGA.AA.A01Z	15	41132777	41705040	77	0.5267	SMALL-GAIN	NONFOCAL	11	"CHAC1,CHP1,DLL4,EXD1,INO80,NDUFAF1,NUSAP1,OIP5,RHOV,SPINT1,VPS18"
TCGA.AA.A00A.01A	15	41793609	43594347	389	0.4652	SMALL-GAIN	NONFOCAL	31	"CAPN3,CCNDBP1,CDAN1,EHD4,EPB42,GANC,HAUS2,ITPKA,JMJD7,JMJD7-PLA2G4B,LRRC57,LTK,MAPKBP1,MGA,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,RPAP1,SNAP23,SPTBN5,STARD9,TGM5,TGM7,TMEM62,TMEM87A,TTBK2,TYRO3,UBR1,VPS39,ZNF106"
TCGA.AA.3941	15	42585437	46161792	621	0.5159	SMALL-GAIN	NONFOCAL	55	"ADAL,B2M,BLOC1S6,C15orf43,C15orf48,CAPN3,CASC4,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EIF3J,ELL3,EPB42,FRMD5,GANC,GATM,HAUS2,HYPK,LCMT2,LRRC57,MAP1A,MFAP1,PATL2,PDIA3,PPIP5K1,SERF2,SERINC4,SHF,SLC28A2,SLC30A4,SNAP23,SORD,SPATA5L1,SPG11,SQRDL,STARD9,STRC,TGM5,TGM7,TMEM62,TP53BP1,TRIM69,TTBK2,TUBGCP4,UBR1,WDR76,ZNF106,ZSCAN29"
TCGA.AA.A02K.01A	15	42987303	48780274	667	0.3832	SMALL-GAIN	NONFOCAL	56	"ADAL,B2M,BLOC1S6,C15orf43,C15orf48,CASC4,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,CTDSPL2,CTXN2,DUOX1,DUOX2,DUOXA1,DUOXA2,DUT,EIF3J,ELL3,EPB42,FBN1,FRMD5,GATM,HYPK,LCMT2,MAP1A,MFAP1,MYEF2,PATL2,PDIA3,PPIP5K1,SEMA6D,SERF2,SERINC4,SHF,SLC12A1,SLC24A5,SLC28A2,SLC30A4,SORD,SPATA5L1,SPG11,SQRDL,STARD9,STRC,TGM5,TGM7,TMEM62,TP53BP1,TRIM69,TTBK2,TUBGCP4,UBR1,WDR76,ZSCAN29"
TCGA.AA.A00A.01A	15	43699551	50474598	555	0.5087	SMALL-GAIN	NONFOCAL	54	"ATP8B4,B2M,BLOC1S6,C15orf43,C15orf48,CASC4,CATSPER2,CEP152,CKMT1A,CKMT1B,COPS2,CTDSPL2,CTXN2,DTWD1,DUOX1,DUOX2,DUOXA1,DUOXA2,DUT,EID1,EIF3J,ELL3,FAM227B,FBN1,FGF7,FRMD5,GALK2,GATM,HYPK,MAP1A,MFAP1,MYEF2,PATL2,PDIA3,PPIP5K1,SECISBP2L,SEMA6D,SERF2,SERINC4,SHC4,SHF,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SORD,SPATA5L1,SPG11,SQRDL,STRC,TP53BP1,TRIM69,WDR76"
TCGA.AA.A010.01A	15	43940068	45389812	188	0.5692	SMALL-GAIN	NONFOCAL	20	"B2M,C15orf43,CASC4,CATSPER2,CKMT1A,CTDSPL2,DUOX2,EIF3J,ELL3,FRMD5,HYPK,MFAP1,PATL2,PDIA3,SERF2,SERINC4,SORD,SPG11,TRIM69,WDR76"
TCGA.AA.A00Q.01A	15	44085145	64444786	1282	0.4157	SMALL-GAIN	NONFOCAL	125	Too-Many
TCGA.A6.3808.01A	15	48051948	50601851	281	0.6048	SMALL-GAIN	NONFOCAL	20	"ATP8B4,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GABPB1,GALK2,HDC,MYEF2,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5,SLC27A2"
TCGA.AA.A00N.01A	15	49143319	51031825	196	0.3931	SMALL-GAIN	NONFOCAL	16	"ATP8B4,COPS2,DTWD1,EID1,FAM227B,FGF7,GABPB1,GALK2,HDC,SECISBP2L,SHC4,SLC27A2,SPPL2A,TRPM7,USP50,USP8"
TCGA.AA.A00A.01A	15	50528065	52356537	181	0.619	SMALL-GAIN	NONFOCAL	18	"AP4E1,CYP19A1,DMXL2,GABPB1,GLDN,HDC,LEO1,LYSMD2,MAPK6,SCG3,SLC27A2,SPPL2A,TMOD2,TMOD3,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.AA.A00L.01A	15	50782438	52442005	162	0.6112	SMALL-GAIN	NONFOCAL	17	"AP4E1,BCL2L10,CYP19A1,DMXL2,GLDN,GNB5,LEO1,LYSMD2,MAPK6,SCG3,SPPL2A,TMOD2,TMOD3,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.D5.6538	15	53469351	55916032	968	0.3817	SMALL-GAIN	NONFOCAL	11	"C15orf65,CCPG1,DYX1C1,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RSL24D1,UNC13C,WDR72"
TCGA.AA.A00L.01A	15	53901668	57555263	121	0.471	SMALL-GAIN	NONFOCAL	17	"C15orf65,CCPG1,DYX1C1,MNS1,NEDD4,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RFX7,RSL24D1,TCF12,TEX9,UNC13C,WDR72,ZNF280D"
TCGA.AA.3941	15	55351600	79867841	7418	0.4613	SMALL-GAIN	NONFOCAL	211	Too-Many
TCGA.AA.A00A.01A	15	58000864	63353007	315	0.4368	SMALL-GAIN	NONFOCAL	25	"ADAM10,ALDH1A2,ANXA2,AQP9,BNIP2,C2CD4A,C2CD4B,CCNB2,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,ICE2,LDHAL6B,LIPC,MYO1E,POLR2M,RNF111,RORA,SLTM,TLN2,TPM1,VPS13C"
TCGA.AA.A00L.01A	15	58247333	63882843	367	0.4433	SMALL-GAIN	NONFOCAL	29	"ADAM10,ALDH1A2,ANXA2,APH1B,AQP9,BNIP2,C2CD4A,C2CD4B,CA12,CCNB2,FAM63B,FAM81A,FOXB1,GCNT3,GTF2A2,ICE2,LACTB,LDHAL6B,LIPC,MYO1E,RAB8B,RNF111,RORA,RPS27L,SLTM,TLN2,TPM1,USP3,VPS13C"
TCGA.AA.3872	15	63841674	65526800	302	0.5984	SMALL-GAIN	NONFOCAL	26	"ANKDD1A,CILP,CLPX,CSNK1G1,DAPK2,FAM96A,FBXL22,HERC1,KBTBD13,KIAA0101,MTFMT,OAZ2,PDCD7,PIF1,PLEKHO2,PPIB,RASL12,RBPMS2,SLC51B,SNX1,SNX22,SPG21,TRIP4,UBAP1L,USP3,ZNF609"
TCGA.AA.A00L.01A	15	65257612	65628111	59	0.5399	SMALL-GAIN	NONFOCAL	11	"CILP,CLPX,IGDCC3,KBTBD13,MTFMT,PARP16,PDCD7,RASL12,SLC51B,SPG21,UBAP1L"
TCGA.AA.A00L.01A	15	65739175	69018144	222	0.5723	SMALL-GAIN	NONFOCAL	27	"AAGAB,C15orf61,CALML4,CLN6,CORO2B,DENND4A,DIS3L,DPP8,FEM1B,HACD3,IQCH,ITGA11,LCTL,MAP2K1,MAP2K5,MEGF11,PIAS1,RAB11A,RPL4,SKOR1,SLC24A1,SMAD3,SMAD6,SNAPC5,TIPIN,VWA9,ZWILCH"
TCGA.AA.3854	15	66143818	102400036	11933	0.3837	SMALL-GAIN	NONFOCAL	253	Too-Many
TCGA.AA.A00Q.01A	15	66645116	74005185	427	0.4136	SMALL-GAIN	NONFOCAL	51	"AAGAB,ADPGK,ANP32A,ARIH1,BBS4,C15orf61,CALML4,CD276,CELF6,CLN6,CORO2B,CT62,FEM1B,GLCE,GOLGA6B,GRAMD2,HCN4,HEXA,IQCH,ITGA11,KIF23,LARP6,LCTL,LRRC49,MAP2K1,MAP2K5,MYO9A,NEO1,NOX5,NPTN,NR2E3,PAQR5,PARP6,PIAS1,PKM,REC114,RPL4,RPLP1,SENP8,SKOR1,SMAD3,SMAD6,SNAPC5,SPESP1,THAP10,THSD4,TIPIN,TLE3,TMEM202,UACA,ZWILCH"
TCGA.AG.A01W.01A	15	66859734	70289703	206	0.4697	SMALL-GAIN	NONFOCAL	20	"AAGAB,ANP32A,C15orf61,CALML4,CLN6,CORO2B,FEM1B,GLCE,IQCH,ITGA11,KIF23,MAP2K5,NOX5,PAQR5,PIAS1,RPLP1,SKOR1,SMAD3,SMAD6,SPESP1"
TCGA.A6.3808.01A	15	67430302	74703876	597	0.3941	SMALL-GAIN	NONFOCAL	56	"AAGAB,ADPGK,ANP32A,ARIH1,BBS4,C15orf59,C15orf61,CALML4,CCDC33,CD276,CELF6,CLN6,CORO2B,CT62,CYP11A1,FEM1B,GLCE,GOLGA6A,GOLGA6B,GRAMD2,HCN4,HEXA,IQCH,ISLR,ISLR2,ITGA11,KIF23,LARP6,LOXL1,LRRC49,MAP2K5,MYO9A,NEO1,NOX5,NPTN,NR2E3,PAQR5,PARP6,PIAS1,PKM,PML,REC114,RPLP1,SEMA7A,SENP8,SKOR1,SMAD3,SPESP1,STOML1,STRA6,TBC1D21,THAP10,THSD4,TLE3,TMEM202,UACA"
TCGA.AA.A00A.01A	15	67547203	69018144	74	0.5062	SMALL-GAIN	NONFOCAL	11	"AAGAB,C15orf61,CALML4,CLN6,CORO2B,FEM1B,IQCH,ITGA11,MAP2K5,PIAS1,SKOR1"
TCGA.AA.A00L.01A	15	69737138	78566511	604	0.433	SMALL-GAIN	NONFOCAL	88	"ACSBG1,ADPGK,ARID3B,ARIH1,BBS4,C15orf27,C15orf39,C15orf59,CCDC33,CD276,CELF6,CIB2,CLK3,COMMD4,COX5A,CPLX3,CSK,CSPG4,CT62,CYP11A1,CYP1A1,CYP1A2,DNAJA4,EDC3,ETFA,FAM219B,FBXO22,GOLGA6A,GOLGA6B,GOLGA6C,GOLGA6D,GRAMD2,HCN4,HEXA,HMG20A,IDH3A,IMP3,ISL2,ISLR,ISLR2,KIF23,LARP6,LINGO1,LMAN1L,LOXL1,LRRC49,MAN2C1,MPI,MYO9A,NEIL1,NEO1,NPTN,NR2E3,NRG4,ODF3L1,PARP6,PEAK1,PKM,PML,PPCDC,PSTPIP1,PTPN9,RCN2,REC114,RPLP1,RPP25,SCAMP2,SCAMP5,SCAPER,SEMA7A,SENP8,SH2D7,SIN3A,SNUPN,SNX33,STOML1,STRA6,TBC1D21,TBC1D2B,THAP10,THSD4,TLE3,TMEM202,TSPAN3,UACA,UBE2Q2,UBL7,ULK3"
TCGA.AA.A00A.01A	15	69747457	77348358	521	0.4574	SMALL-GAIN	NONFOCAL	78	"ADPGK,ARID3B,ARIH1,BBS4,C15orf27,C15orf39,C15orf59,CCDC33,CD276,CELF6,CLK3,COMMD4,COX5A,CPLX3,CSK,CSPG4,CT62,CYP11A1,CYP1A1,CYP1A2,EDC3,ETFA,FAM219B,FBXO22,GOLGA6A,GOLGA6B,GOLGA6C,GOLGA6D,GRAMD2,HCN4,HEXA,IMP3,ISL2,ISLR,ISLR2,LARP6,LMAN1L,LOXL1,LRRC49,MAN2C1,MPI,MYO9A,NEIL1,NEO1,NPTN,NR2E3,NRG4,ODF3L1,PARP6,PKM,PML,PPCDC,PSTPIP1,PTPN9,RCN2,REC114,RPLP1,RPP25,SCAMP2,SCAMP5,SCAPER,SEMA7A,SENP8,SIN3A,SNUPN,SNX33,STOML1,STRA6,TBC1D21,THAP10,THSD4,TLE3,TMEM202,TSPAN3,UACA,UBE2Q2,UBL7,ULK3"
TCGA.AA.3872	15	71363703	75108130	920	0.5499	SMALL-GAIN	NONFOCAL	40	"ADPGK,ARID3B,ARIH1,BBS4,C15orf59,CCDC33,CD276,CELF6,CLK3,CSK,CT62,CYP11A1,CYP1A1,CYP1A2,EDC3,GOLGA6A,GOLGA6B,GRAMD2,HCN4,HEXA,ISLR,ISLR2,LMAN1L,LOXL1,MYO9A,NEO1,NPTN,NR2E3,PARP6,PKM,PML,REC114,SEMA7A,SENP8,STOML1,STRA6,TBC1D21,THSD4,TMEM202,UBL7"
TCGA.AA.A00N.01A	15	72766964	74240099	115	0.5364	SMALL-GAIN	NONFOCAL	12	"ADPGK,ARIH1,BBS4,C15orf59,CD276,GOLGA6B,HCN4,LOXL1,NEO1,NPTN,REC114,TBC1D21"
TCGA.AG.A01W.01A	15	74420490	75074891	40	0.5785	SMALL-GAIN	NONFOCAL	13	"ARID3B,CCDC33,CLK3,CSK,CYP11A1,CYP1A1,CYP1A2,EDC3,ISLR,ISLR2,SEMA7A,STRA6,UBL7"
TCGA.AA.3509.01A	15	75913184	77763210	140	0.4572	SMALL-GAIN	NONFOCAL	17	"C15orf27,CSPG4,ETFA,FBXO22,HMG20A,IMP3,ISL2,NRG4,ODF3L1,PEAK1,PSTPIP1,RCN2,SCAPER,SNUPN,SNX33,TSPAN3,UBE2Q2"
TCGA.AA.A00L.01A	15	78882116	81615178	173	0.5056	SMALL-GAIN	NONFOCAL	24	"ABHD17C,ADAMTS7,ANKRD34C,ARNT2,BCL2A1,C15orf26,CEMIP,CHRNA3,CHRNA5,CHRNB4,CTSH,FAH,IL16,KIAA1024,MESDC1,MESDC2,MORF4L1,MTHFS,RASGRF1,ST20,ST20-MTHFS,STARD5,TMED3,ZFAND6"
TCGA.AA.A00A.01A	15	78909328	89761744	415	0.4281	SMALL-GAIN	NONFOCAL	67	"ABHD17C,ABHD2,ACAN,ADAMTS7,ADAMTSL3,AEN,AGBL1,AKAP13,ALPK3,ANKRD34C,AP3B2,ARNT2,BCL2A1,BNC1,BTBD1,C15orf26,C15orf40,CEMIP,CHRNA3,CHRNB4,CPEB1,CTSH,DET1,EFTUD1,FAH,FAM103A1,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HAPLN3,HDGFRP3,HOMER2,IL16,ISG20,KIAA1024,KLHL25,MESDC1,MESDC2,MEX3B,MFGE8,MORF4L1,MRPL46,MRPS11,MTHFS,NMB,NTRK3,PDE8A,RASGRF1,RLBP1,RPS17,SAXO2,SEC11A,SH3GL3,SLC28A1,ST20,ST20-MTHFS,STARD5,TM6SF1,TMC3,TMED3,UBE2Q2L,WDR73,WHAMM,ZFAND6,ZNF592,ZSCAN2"
TCGA.AA.A010.01A	15	79214411	80885893	96	0.5564	SMALL-GAIN	NONFOCAL	12	"ANKRD34C,ARNT2,BCL2A1,CTSH,FAH,KIAA1024,MTHFS,RASGRF1,ST20,ST20-MTHFS,TMED3,ZFAND6"
TCGA.AA.A02H.01A	15	81517722	89002796	345	0.667	SMALL-GAIN	NONFOCAL	37	"ADAMTSL3,AGBL1,AKAP13,ALPK3,AP3B2,BNC1,BTBD1,C15orf40,CPEB1,EFTUD1,FAM103A1,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HDGFRP3,HOMER2,IL16,KLHL25,MEX3B,MRPL46,NMB,NTRK3,PDE8A,RPS17,SAXO2,SEC11A,SH3GL3,SLC28A1,STARD5,TM6SF1,TMC3,UBE2Q2L,WDR73,WHAMM,ZNF592,ZSCAN2"
TCGA.AG.A01W.01A	15	81584380	86983595	243	0.4055	SMALL-GAIN	NONFOCAL	35	"ADAMTSL3,AGBL1,AKAP13,ALPK3,AP3B2,BNC1,BTBD1,C15orf40,CPEB1,EFTUD1,FAM103A1,FSD2,GOLGA6L10,GOLGA6L4,GOLGA6L9,HDGFRP3,HOMER2,IL16,KLHL25,MEX3B,NMB,PDE8A,RPS17,SAXO2,SEC11A,SH3GL3,SLC28A1,STARD5,TM6SF1,TMC3,UBE2Q2L,WDR73,WHAMM,ZNF592,ZSCAN2"
TCGA.AA.3941	15	82036647	84345659	401	0.511	SMALL-GAIN	NONFOCAL	19	"ADAMTSL3,AP3B2,BNC1,BTBD1,C15orf40,CPEB1,EFTUD1,FAM103A1,FSD2,GOLGA6L10,GOLGA6L9,HDGFRP3,HOMER2,MEX3B,RPS17,SAXO2,SH3GL3,TM6SF1,WHAMM"
TCGA.AA.A00L.01A	15	83674325	86260479	159	0.4698	SMALL-GAIN	NONFOCAL	18	"ADAMTSL3,AKAP13,ALPK3,BNC1,BTBD1,C15orf40,GOLGA6L4,HDGFRP3,NMB,PDE8A,SEC11A,SH3GL3,SLC28A1,TM6SF1,UBE2Q2L,WDR73,ZNF592,ZSCAN2"
TCGA.AA.A00N.01A	15	85259194	89021051	150	0.6731	SMALL-GAIN	NONFOCAL	11	"AGBL1,AKAP13,ALPK3,KLHL25,MRPL46,MRPS11,NTRK3,PDE8A,SEC11A,SLC28A1,ZNF592"
TCGA.AG.3612	15	88162846	102400036	5641	0.6183	SMALL-GAIN	NONFOCAL	76	"ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.A010.01A	15	88576041	89807699	86	0.556	SMALL-GAIN	NONFOCAL	12	"ABHD2,ACAN,AEN,DET1,FANCI,HAPLN3,ISG20,MFGE8,MRPL46,MRPS11,NTRK3,RLBP1"
TCGA.AA.3941	15	89079671	91686452	816	0.6443	SMALL-GAIN	NONFOCAL	41	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,NGRN,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEMA4B,SV2B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3850	15	89086652	91627062	796	0.44955	SMALL-GAIN	NONFOCAL	40	"ABHD2,ACAN,AEN,ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,DET1,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IQGAP1,ISG20,KIF7,MAN2A2,MESP1,MESP2,MFGE8,NGRN,PEX11A,PLIN1,POLG,PRC1,RCCD1,RHCG,RLBP1,SEMA4B,TICRR,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.A00A.01A	15	90213220	91358310	145	0.5702	SMALL-GAIN	NONFOCAL	19	"ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,GDPGP1,IDH2,IQGAP1,MESP1,MESP2,NGRN,PEX11A,PLIN1,SEMA4B,WDR93,ZNF710,ZNF774"
TCGA.AA.A00L.01A	15	90213220	91827214	258	0.4821	SMALL-GAIN	NONFOCAL	28	"ANPEP,AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,FES,FURIN,GDPGP1,HDDC3,IDH2,IQGAP1,MAN2A2,MESP1,MESP2,NGRN,PEX11A,PLIN1,PRC1,RCCD1,SEMA4B,SV2B,UNC45A,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AA.3872	15	90400883	91416604	292	0.6004	SMALL-GAIN	NONFOCAL	14	"AP3S2,ARPIN,BLM,C15orf38-AP3S2,CIB1,CRTC3,FURIN,GDPGP1,IDH2,IQGAP1,NGRN,SEMA4B,ZNF710,ZNF774"
TCGA.AA.A00A.01A	15	92973234	99486125	98	0.5588	SMALL-GAIN	NONFOCAL	11	"ARRDC4,C15orf32,CHD2,FAM169B,FAM174B,IGF1R,MCTP2,NR2F2,RGMA,SPATA8,ST8SIA2"
TCGA.AA.A00L.01A	15	93595192	102462347	178	0.4142	SMALL-GAIN	NONFOCAL	28	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F4,OR4F6,PCSK6,PGPEP1L,RGMA,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.A01R	15	98630698	102400036	1555	0.3787	SMALL-GAIN	NONFOCAL	22	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.A00A.01A	15	99679535	102462347	112	0.4399	SMALL-GAIN	NONFOCAL	19	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F4,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,TTC23,VIMP"
TCGA.G5.6233	15	100377318	102400036	880	0.4338	SMALL-GAIN	NONFOCAL	14	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.DM.A1D9	16	91009	430010	74	0.4633	SMALL-GAIN	NONFOCAL	18	"ARHGDIG,AXIN1,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,MRPL28,NPRL3,PDIA2,POLR3K,RGS11,RHBDF1,SNRNP25,TMEM8A"
TCGA.AG.3725	16	91009	1335620	180	0.5142	SMALL-GAIN	NONFOCAL	55	"ARHGDIG,AXIN1,C16orf13,C1QTNF8,CACNA1H,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SSTR5,STUB1,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,WDR24,WDR90,WFIKKN1"
TCGA.AA.3811	16	91009	5224388	1023	0.4619	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.AA.3866	16	91009	5242690	1032	0.4435	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.AA.3982	16	91009	5247683	1030	0.5971	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.NH.A6GC	16	91009	5564345	1187	0.5306	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.A6.2685	16	91009	5606415	1221	0.4655	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.AA.3850	16	91009	6162145	1683	0.37915	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.AA.3955	16	91009	6238084	1740	0.4284	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.AY.A8YK	16	91009	6272048	1744	0.4281	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.DC.4749	16	91009	6285090	1765	0.4739	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.A6.6142	16	91009	6421228	1884	0.4088	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.AA.3679	16	91009	6478897	1932	0.3994	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.AA.3846	16	91009	6673351	2111	0.5504	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.AA.3872	16	91009	9562081	4039	0.4701	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.AZ.6608	16	91009	10367911	4602	0.4002	SMALL-GAIN	NONFOCAL	198	Too-Many
TCGA.AA.A01T	16	91009	70842096	17496	0.417	SMALL-GAIN	NONFOCAL	654	Too-Many
TCGA.F5.6810	16	94807	5646707	1268	0.4439	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.CK.5912	16	94807	6438351	1892	0.4543	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.DC.6154	16	94807	6570963	1995	0.386	SMALL-GAIN	NONFOCAL	189	Too-Many
TCGA.CI.6622	16	94807	33940199	10336	0.3913	SMALL-GAIN	NONFOCAL	441	Too-Many
TCGA.AA.A00Q.01A	16	97383	4930007	673	0.5089	SMALL-GAIN	NONFOCAL	182	Too-Many
TCGA.AA.A00D.01A	16	97383	15802606	869	0.4692	SMALL-GAIN	NONFOCAL	240	Too-Many
TCGA.AG.A014.01A	16	97383	90142216	5452	0.4757	SMALL-GAIN	NONFOCAL	806	Too-Many
TCGA.AA.A01Z	16	414607	1579010	150	0.4758	SMALL-GAIN	NONFOCAL	51	"BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,DECR2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,IFT140,JMJD8,LMF1,METRN,MRPL28,MSLN,NARFL,NHLRC4,NME4,PIGQ,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RHBDL1,RHOT2,RPUSD1,SOX8,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.AG.A01W.01A	16	724180	1515862	150	0.3868	SMALL-GAIN	NONFOCAL	32	"BAIAP3,C16orf91,C1QTNF8,CACNA1H,CCDC154,CCDC78,CHTF18,CLCN7,FAM173A,FBXL16,GNG13,GNPTG,HAGHL,JMJD8,LMF1,METRN,MSLN,NARFL,PRR25,RHBDL1,RPUSD1,SOX8,SSTR5,STUB1,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24"
TCGA.AG.3725	16	1369175	7144122	2274	0.5072	SMALL-GAIN	NONFOCAL	134	Too-Many
TCGA.5M.AATE	16	1692901	1947258	57	0.4092	SMALL-GAIN	NONFOCAL	12	"CRAMP1L,EME2,FAHD1,HAGH,HN1L,IGFALS,MAPK8IP3,MEIOB,MRPS34,NME3,NUBP2,SPSB3"
TCGA.AG.A01Y	16	1847867	2125833	64	0.474	SMALL-GAIN	NONFOCAL	18	"FAHD1,GFER,HAGH,HS3ST6,MEIOB,MSRB1,NDUFB10,NOXO1,NPW,NTHL1,RNF151,RPL3L,RPS2,SLC9A3R2,SYNGR3,TBL3,TSC2,ZNF598"
TCGA.EI.6883	16	2868782	3123560	55	0.3818	SMALL-GAIN	NONFOCAL	16	"CCDC64B,CLDN6,CLDN9,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KREMEN2,MMP25,PAQR4,PKMYT1,PRSS21,PRSS22,THOC6,TNFRSF12A,ZG16B"
TCGA.AA.A01Z	16	2916093	4416100	398	0.5195	SMALL-GAIN	NONFOCAL	42	"ADCY9,C16orf90,CCDC64B,CLDN6,CLDN9,CLUAP1,CORO7,CORO7-PAM16,CREBBP,DNASE1,FLYWCH1,FLYWCH2,GLIS2,HCFC1R1,IL32,KREMEN2,MEFV,MMP25,MTRNR2L4,NAA60,NLRC3,OR1F1,OR2C1,PAM16,PAQR4,PKMYT1,SLX4,SRL,TFAP4,THOC6,TIGD7,TNFRSF12A,TRAP1,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AM.5820	16	2993609	3205394	39	0.5841	SMALL-GAIN	NONFOCAL	15	"CCDC64B,CLDN6,CLDN9,FLYWCH1,HCFC1R1,IL32,KREMEN2,MMP25,PAQR4,PKMYT1,THOC6,TNFRSF12A,ZNF205,ZNF213,ZSCAN10"
TCGA.AA.A010.01A	16	4926840	9002181	133	0.4306	SMALL-GAIN	NONFOCAL	15	"ABAT,ALG1,C16orf89,CARHSP1,EEF2KMT,METTL22,NAGPA,PMM2,PPL,RBFOX1,SEC14L5,TMEM114,TMEM186,UBN1,USP7"
TCGA.CK.5914.01A	16	5058400	9210508	114	0.4357	SMALL-GAIN	NONFOCAL	14	"ABAT,ALG1,C16orf72,C16orf89,CARHSP1,EEF2KMT,METTL22,NAGPA,PMM2,RBFOX1,SEC14L5,TMEM114,TMEM186,USP7"
TCGA.AA.A00Q.01A	16	5127402	10992763	122	0.6207	SMALL-GAIN	NONFOCAL	18	"ABAT,ALG1,ATF7IP2,C16orf72,CARHSP1,CIITA,EEF2KMT,EMP2,GRIN2A,METTL22,NUBP1,PMM2,RBFOX1,TEKT5,TMEM114,TMEM186,TVP23A,USP7"
TCGA.NH.A6GC	16	5572103	90163274	25887	0.4652	SMALL-GAIN	NONFOCAL	618	Too-Many
TCGA.AA.3844	16	6730940	59129691	12291	0.4202	SMALL-GAIN	NONFOCAL	354	Too-Many
TCGA.AY.A8YK	16	6835677	29995802	7902	0.4249	SMALL-GAIN	NONFOCAL	181	Too-Many
TCGA.AA.3846	16	6858922	70842096	15226	0.5314	SMALL-GAIN	NONFOCAL	466	Too-Many
TCGA.DC.4749	16	6894474	90163274	24831	0.505	SMALL-GAIN	NONFOCAL	618	Too-Many
TCGA.CK.5912	16	6926260	90163274	24748	0.4644	SMALL-GAIN	NONFOCAL	618	Too-Many
TCGA.AA.3679	16	6950274	34470703	8047	0.3966	SMALL-GAIN	NONFOCAL	253	Too-Many
TCGA.DC.6154	16	7039420	90163274	24663	0.397	SMALL-GAIN	NONFOCAL	618	Too-Many
TCGA.AA.3955	16	7052773	10795114	2362	0.4063	SMALL-GAIN	NONFOCAL	13	"ABAT,ATF7IP2,C16orf72,CARHSP1,EMP2,GRIN2A,METTL22,PMM2,RBFOX1,TEKT5,TMEM114,TMEM186,USP7"
TCGA.AG.3725	16	7373048	12647180	2850	0.5752	SMALL-GAIN	NONFOCAL	32	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,DEXI,EMP2,GRIN2A,GSPT1,LITAF,METTL22,NUBP1,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RSL1D1,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AH.6644	16	7505081	52638502	9349	0.4476	SMALL-GAIN	NONFOCAL	283	Too-Many
TCGA.AG.3611.01A	16	7759009	24551896	939	0.4441	SMALL-GAIN	NONFOCAL	123	Too-Many
TCGA.AA.A00A.01A	16	9024098	11444457	69	0.4308	SMALL-GAIN	NONFOCAL	17	"ATF7IP2,C16orf72,CIITA,CLEC16A,DEXI,EMP2,GRIN2A,NUBP1,PRM1,PRM2,PRM3,RMI2,SOCS1,TEKT5,TNP2,TVP23A,USP7"
TCGA.AA.3872	16	9707264	59572100	10432	0.4464	SMALL-GAIN	NONFOCAL	345	Too-Many
TCGA.AA.A01Z	16	10002861	12092574	951	0.5057	SMALL-GAIN	NONFOCAL	23	"ATF7IP2,CIITA,CLEC16A,DEXI,EMP2,GRIN2A,GSPT1,LITAF,NUBP1,PRM1,PRM2,PRM3,RMI2,RSL1D1,SNN,SNX29,SOCS1,TEKT5,TNFRSF17,TNP2,TVP23A,TXNDC11,ZC3H7A"
TCGA.AA.A00L.01A	16	10721398	19505537	377	0.5165	SMALL-GAIN	NONFOCAL	57	"ABCC1,ABCC6,ARL6IP1,BFAR,C16orf45,CIITA,CLEC16A,CLEC19A,COQ7,CPPED1,DEXI,ERCC4,FOPNL,GSPT1,ITPRIPL2,KIAA0430,LITAF,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NTAN1,NUBP1,PARN,PDXDC1,PLA2G10,PRM1,PRM2,PRM3,RMI2,RPS15A,RRN3,RSL1D1,SHISA9,SMG1,SNN,SNX29,SOCS1,SYT17,TEKT5,TMC5,TMC7,TNFRSF17,TNP2,TVP23A,TXNDC11,XYLT1,ZC3H7A"
TCGA.AA.3955	16	10816172	34421700	5605	0.4372	SMALL-GAIN	NONFOCAL	240	Too-Many
TCGA.AA.3982	16	10819053	12892983	954	0.5278	SMALL-GAIN	NONFOCAL	20	"CIITA,CLEC16A,CPPED1,DEXI,GSPT1,LITAF,NUBP1,PRM1,PRM2,PRM3,RMI2,RSL1D1,SNN,SNX29,SOCS1,TNFRSF17,TNP2,TVP23A,TXNDC11,ZC3H7A"
TCGA.AA.3842	16	11068843	90163274	22218	0.4304	SMALL-GAIN	NONFOCAL	601	Too-Many
TCGA.AA.3866	16	11070227	12988183	887	0.4885	SMALL-GAIN	NONFOCAL	16	"CLEC16A,CPPED1,GSPT1,LITAF,PRM1,PRM2,PRM3,RMI2,RSL1D1,SNN,SNX29,SOCS1,TNFRSF17,TNP2,TXNDC11,ZC3H7A"
TCGA.AZ.6608	16	11167602	32483005	5413	0.4219	SMALL-GAIN	NONFOCAL	233	Too-Many
TCGA.AG.3725	16	12654617	53353158	6832	0.6384	SMALL-GAIN	NONFOCAL	253	Too-Many
TCGA.T9.A92H	16	13525212	15154897	470	0.6173	SMALL-GAIN	NONFOCAL	12	"BFAR,ERCC4,MKL2,NOMO1,NPIPA1,NPIPA2,NPIPA3,NTAN1,PARN,PDXDC1,PLA2G10,RRN3"
TCGA.AA.A00A.01A	16	14015840	15802606	93	0.5689	SMALL-GAIN	NONFOCAL	18	"BFAR,C16orf45,ERCC4,KIAA0430,MKL2,MPV17L,MYH11,NDE1,NOMO1,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,PARN,PDXDC1,PLA2G10,RRN3"
TCGA.AG.3726	16	14331024	16353165	325	0.6267	SMALL-GAIN	NONFOCAL	21	"ABCC1,ABCC6,BFAR,C16orf45,FOPNL,KIAA0430,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,PARN,PDXDC1,PLA2G10,RRN3"
TCGA.AA.3982	16	14371050	16353165	310	0.5672	SMALL-GAIN	NONFOCAL	20	"ABCC1,ABCC6,BFAR,C16orf45,FOPNL,KIAA0430,MPV17L,MYH11,NDE1,NOMO1,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NTAN1,PARN,PDXDC1,PLA2G10,RRN3"
TCGA.A6.6142	16	14759767	53004619	5873	0.4237	SMALL-GAIN	NONFOCAL	246	Too-Many
TCGA.AA.3930.01A	16	15489754	22295157	668	0.632	SMALL-GAIN	NONFOCAL	56	"ABCC1,ABCC6,ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,C16orf45,C16orf52,C16orf62,CCP110,CLEC19A,COQ7,CRYM,DCUN1D3,DNAH3,EEF2K,ERI2,FOPNL,GDE1,GP2,GPR139,GPRC5B,IGSF6,IQCK,ITPRIPL2,KIAA0430,KNOP1,LOC81691,LYRM1,METTL9,MPV17L,MYH11,NDE1,NOMO2,NOMO3,NPIPA7,NPIPA8,NPIPB3,OTOA,PDILT,PDZD9,RPS15A,SMG1,SYT17,THUMPD1,TMC5,TMC7,TMEM159,UMOD,UQCRC2,VWA3A,XYLT1,ZP2"
TCGA.AA.3982	16	17127065	25865789	2229	0.3794	SMALL-GAIN	NONFOCAL	74	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,AQP8,ARHGAP17,ARL6IP1,C16orf52,C16orf62,CACNG3,CCP110,CDR2,CHP2,CLEC19A,COG7,COQ7,CRYM,DCTN5,DCUN1D3,DNAH3,EARS2,EEF2K,ERI2,ERN2,GDE1,GGA2,GP2,GPR139,GPRC5B,HS3ST2,HS3ST4,IGSF6,IQCK,ITPRIPL2,KNOP1,LCMT1,LOC81691,LYRM1,METTL9,NDUFAB1,NOMO2,NPIPA7,NPIPA8,NPIPB3,NPIPB5,OTOA,PALB2,PDILT,PDZD9,PLK1,POLR3E,PRKCB,RBBP6,RPS15A,SCNN1B,SCNN1G,SLC5A11,SMG1,SYT17,THUMPD1,TMC5,TMC7,TMEM159,TNRC6A,UBFD1,UMOD,UQCRC2,USP31,VWA3A,XYLT1,ZKSCAN2,ZP2"
TCGA.AA.A00Q.01A	16	18796004	31495972	1235	0.4969	SMALL-GAIN	NONFOCAL	185	Too-Many
TCGA.AA.A00A.01A	16	18863352	31277088	1137	0.4514	SMALL-GAIN	NONFOCAL	176	Too-Many
TCGA.AA.A00L.01A	16	19663247	23497285	388	0.4445	SMALL-GAIN	NONFOCAL	41	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,C16orf52,C16orf62,CDR2,COG7,CRYM,DCUN1D3,DNAH3,EEF2K,ERI2,GGA2,GP2,GPR139,GPRC5B,HS3ST2,IGSF6,IQCK,KNOP1,LOC81691,LYRM1,METTL9,NPIPB3,NPIPB5,OTOA,PDILT,PDZD9,POLR3E,SCNN1B,SCNN1G,THUMPD1,TMEM159,UMOD,UQCRC2,USP31,VWA3A,ZP2"
TCGA.CK.5914.01A	16	22152864	23555815	128	0.4194	SMALL-GAIN	NONFOCAL	12	"CDR2,COG7,EARS2,EEF2K,GGA2,HS3ST2,NPIPB5,POLR3E,SCNN1B,SCNN1G,USP31,VWA3A"
TCGA.AA.3930.01A	16	23223305	31511928	958	0.6144	SMALL-GAIN	NONFOCAL	138	Too-Many
TCGA.AA.A00L.01A	16	23676899	28990446	331	0.4521	SMALL-GAIN	NONFOCAL	43	"APOBR,AQP8,ARHGAP17,ATP2A1,ATXN2L,C16orf82,CACNG3,CCDC101,CD19,CHP2,CLN3,DCTN5,EIF3C,EIF3CL,ERN2,GSG1L,GTF3C1,HS3ST4,IL21R,IL27,IL4R,KDM8,KIAA0556,LCMT1,NFATC2IP,NPIPB6,NPIPB9,NSMCE1,NUPR1,PLK1,PRKCB,RABEP2,RBBP6,SBK1,SH2B1,SLC5A11,SPNS1,SULT1A1,SULT1A2,TNRC6A,TUFM,XPO6,ZKSCAN2"
TCGA.DM.A1D6	16	24533698	27446195	1151	0.5052	SMALL-GAIN	NONFOCAL	13	"AQP8,ARHGAP17,C16orf82,HS3ST4,IL21R,IL4R,KDM8,LCMT1,NSMCE1,RBBP6,SLC5A11,TNRC6A,ZKSCAN2"
TCGA.F4.6459	16	24576111	90163274	18466	0.5829	SMALL-GAIN	NONFOCAL	496	Too-Many
TCGA.AG.3611.01A	16	24580064	50763681	946	0.4107	SMALL-GAIN	NONFOCAL	157	Too-Many
TCGA.AA.A010.01A	16	24788215	28222591	204	0.5627	SMALL-GAIN	NONFOCAL	16	"AQP8,ARHGAP17,C16orf82,GSG1L,GTF3C1,HS3ST4,IL21R,IL4R,KDM8,KIAA0556,LCMT1,NSMCE1,SLC5A11,TNRC6A,XPO6,ZKSCAN2"
TCGA.AA.3982	16	25873969	34471297	1331	0.386	SMALL-GAIN	NONFOCAL	124	Too-Many
TCGA.G4.6299	16	26132277	31957367	1164	0.4114	SMALL-GAIN	NONFOCAL	120	Too-Many
TCGA.AA.A00N.01A	16	26146906	28602863	156	0.5828	SMALL-GAIN	NONFOCAL	19	"APOBR,C16orf82,CCDC101,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,HS3ST4,IL21R,IL27,IL4R,KDM8,KIAA0556,NPIPB6,NSMCE1,NUPR1,SBK1,XPO6"
TCGA.CK.5914.01A	16	27504502	28619590	109	0.5425	SMALL-GAIN	NONFOCAL	15	"APOBR,CCDC101,CLN3,EIF3C,EIF3CL,GSG1L,GTF3C1,IL27,KIAA0556,NPIPB6,NUPR1,SBK1,SULT1A1,SULT1A2,XPO6"
TCGA.AA.A00D.01A	16	28997894	30731432	187	0.4617	SMALL-GAIN	NONFOCAL	53	"ALDOA,ASPHD1,BOLA2,BOLA2B,C16orf54,C16orf92,CD2BP2,CDIPT,CORO1A,DCTPP1,DOC2A,FAM57B,FBRS,GDPD3,HIRIP3,INO80E,ITGAL,KCTD13,KIF22,LAT,LOC730183,MAPK3,MAZ,MVP,MYLPF,PAGR1,PPP4C,PRR14,PRRT2,QPRT,SEPHS2,SEPT1,SEZ6L2,SLX1A,SLX1B,SPN,SRCAP,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,YPEL3,ZG16,ZNF48,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.D5.6532	16	29580610	60553310	4767	0.486	SMALL-GAIN	NONFOCAL	195	Too-Many
TCGA.AG.3906.01A	16	30093739	30380499	34	0.648	SMALL-GAIN	NONFOCAL	14	"BOLA2,BOLA2B,CD2BP2,CORO1A,GDPD3,MAPK3,PPP4C,SLX1A,SLX1B,SULT1A3,SULT1A4,TBC1D10B,TBX6,YPEL3"
TCGA.AA.3860	16	30320306	31009587	52	0.5109	SMALL-GAIN	NONFOCAL	31	"BCL7C,C16orf93,CD2BP2,CTF1,DCTPP1,FBRS,FBXL19,HSD3B7,ITGAL,LOC730183,MYLPF,ORAI3,PHKG2,PRR14,RNF40,SEPHS2,SEPT1,SETD1A,SRCAP,STX1B,TBC1D10B,TMEM265,ZNF48,ZNF629,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785"
TCGA.AA.3952	16	30452240	31347747	80	0.4251	SMALL-GAIN	NONFOCAL	38	"BCKDK,BCL7C,C16orf93,CTF1,FBRS,FBXL19,FUS,HSD3B7,ITGAL,ITGAM,KAT8,LOC730183,ORAI3,PHKG2,PRR14,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RNF40,SEPHS2,SETD1A,SRCAP,STX1B,STX4,TMEM265,TRIM72,VKORC1,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.G4.6314	16	30539096	34923038	242	0.3992	SMALL-GAIN	NONFOCAL	50	"AHSP,ARMC5,BCKDK,BCL7C,C16orf58,C16orf93,COX6A2,CTF1,FBRS,FBXL19,FUS,HSD3B7,ITGAD,ITGAM,ITGAX,KAT8,LOC730183,ORAI3,PHKG2,PRR14,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RNF40,SETD1A,SLC5A2,SRCAP,STX1B,STX4,TGFB1I1,TMEM265,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,TRIM72,VKORC1,ZNF267,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF720,ZNF747,ZNF764,ZNF785,ZNF843"
TCGA.AA.3812	16	30682375	35122094	250	0.6122	SMALL-GAIN	NONFOCAL	43	"AHSP,ARMC5,BCKDK,BCL7C,C16orf58,C16orf93,COX6A2,CTF1,FBXL19,FUS,HSD3B7,ITGAD,ITGAM,ITGAX,KAT8,LOC730183,ORAI3,PHKG2,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RNF40,SETD1A,SLC5A2,SRCAP,STX1B,STX4,TGFB1I1,TMEM265,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,TRIM72,VKORC1,ZNF267,ZNF629,ZNF646,ZNF668,ZNF720,ZNF843"
TCGA.AA.A00D.01A	16	30740280	31508123	172	0.4231	SMALL-GAIN	NONFOCAL	35	"ARMC5,BCKDK,BCL7C,C16orf58,C16orf93,COX6A2,CTF1,FBXL19,FUS,HSD3B7,ITGAD,ITGAM,ITGAX,KAT8,ORAI3,PHKG2,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RNF40,SETD1A,SLC5A2,SRCAP,STX1B,STX4,TGFB1I1,TMEM265,TRIM72,VKORC1,ZNF629,ZNF646,ZNF668,ZNF843"
TCGA.AA.A00L.01A	16	30740280	54317579	566	0.3878	SMALL-GAIN	NONFOCAL	79	"ABCC11,ABCC12,ADCY7,AHSP,AKTIP,ARMC5,BCKDK,BCL7C,BRD7,C16orf58,C16orf78,C16orf87,C16orf93,C16orf97,CBLN1,CHD9,CNEP1R1,COX6A2,CTF1,CYLD,DNAJA2,FBXL19,FTO,FUS,GPT2,HEATR3,HSD3B7,IRX3,ITFG1,ITGAD,ITGAM,ITGAX,KAT8,LOC643802,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORAI3,ORC6,PAPD5,PHKB,PHKG2,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RBL2,RNF40,RPGRIP1L,SALL1,SETD1A,SHCBP1,SIAH1,SLC5A2,SNX20,SRCAP,STX1B,STX4,TGFB1I1,TMEM265,TOX3,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,TRIM72,VKORC1,VPS35,ZNF267,ZNF423,ZNF629,ZNF646,ZNF668,ZNF720,ZNF843"
TCGA.CM.5344	16	30918486	31957367	133	0.6171	SMALL-GAIN	NONFOCAL	30	"AHSP,ARMC5,BCKDK,C16orf58,COX6A2,FBXL19,FUS,HSD3B7,ITGAD,ITGAM,ITGAX,KAT8,ORAI3,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,SETD1A,SLC5A2,STX1B,STX4,TGFB1I1,TRIM72,VKORC1,ZNF267,ZNF646,ZNF668,ZNF720,ZNF843"
TCGA.D5.6538	16	30933063	70850892	7292	0.5877	SMALL-GAIN	NONFOCAL	247	Too-Many
TCGA.AG.3891.01A	16	31045070	31235490	64	0.4216	SMALL-GAIN	NONFOCAL	13	"BCKDK,FUS,KAT8,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,STX4,TRIM72,VKORC1,ZNF646,ZNF668"
TCGA.AA.A00A.01A	16	31371582	56553617	548	0.4263	SMALL-GAIN	NONFOCAL	65	"ABCC11,ABCC12,ADCY7,AHSP,AKTIP,AMFR,ARMC5,BBS2,BRD7,C16orf58,C16orf78,C16orf87,C16orf97,CAPNS2,CBLN1,CES1,CES5A,CHD9,CNEP1R1,COX6A2,CYLD,DNAJA2,FTO,GNAO1,GPT2,HEATR3,IRX3,IRX5,IRX6,ITFG1,ITGAD,ITGAX,LOC643802,LONP2,LPCAT2,MMP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,NUDT21,OGFOD1,ORC6,PAPD5,PHKB,RBL2,RPGRIP1L,SALL1,SHCBP1,SIAH1,SLC5A2,SLC6A2,SNX20,TGFB1I1,TOX3,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF423,ZNF720,ZNF843"
TCGA.AA.A00Q.01A	16	31510572	50258541	241	0.6424	SMALL-GAIN	NONFOCAL	29	"ABCC11,ABCC12,AHSP,C16orf58,C16orf78,C16orf87,CBLN1,CNEP1R1,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,ORC6,PAPD5,PHKB,SHCBP1,SIAH1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,VPS35,ZNF267,ZNF423,ZNF720"
TCGA.AA.3941	16	34202672	51695051	1428	0.5933	SMALL-GAIN	NONFOCAL	28	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,C16orf87,CBLN1,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,SALL1,SHCBP1,SIAH1,SNX20,VPS35,ZNF423"
TCGA.AA.3679	16	34822370	79184459	10712	0.3978	SMALL-GAIN	NONFOCAL	265	Too-Many
TCGA.AZ.6608	16	35092444	90163274	16624	0.4044	SMALL-GAIN	NONFOCAL	365	Too-Many
TCGA.D5.6535	16	46534976	52000685	1477	0.6516	SMALL-GAIN	NONFOCAL	28	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,C16orf87,CBLN1,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,SALL1,SHCBP1,SIAH1,SNX20,VPS35,ZNF423"
TCGA.T9.A92H	16	49075485	51015160	682	0.6767	SMALL-GAIN	NONFOCAL	12	"ADCY7,BRD7,C16orf78,CBLN1,CNEP1R1,CYLD,HEATR3,NKD1,NOD2,PAPD5,SNX20,ZNF423"
TCGA.AA.A00D.01A	16	50345905	55690570	157	0.4416	SMALL-GAIN	NONFOCAL	22	"ADCY7,AKTIP,BRD7,C16orf97,CAPNS2,CHD9,CYLD,FTO,IRX3,IRX5,IRX6,LOC643802,LPCAT2,MMP2,NKD1,NOD2,RBL2,RPGRIP1L,SALL1,SLC6A2,SNX20,TOX3"
TCGA.AA.3941	16	52870153	56339225	1369	0.5168	SMALL-GAIN	NONFOCAL	16	"AKTIP,CAPNS2,CES1,CES5A,CHD9,FTO,GNAO1,IRX3,IRX5,IRX6,LOC643802,LPCAT2,MMP2,RBL2,RPGRIP1L,SLC6A2"
TCGA.A6.2678	16	53100135	78107973	7874	0.3822	SMALL-GAIN	NONFOCAL	234	Too-Many
TCGA.CM.6170	16	55397861	56772452	521	0.5466	SMALL-GAIN	NONFOCAL	23	"AMFR,BBS2,CAPNS2,CES1,CES5A,GNAO1,LPCAT2,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NUDT21,NUP93,OGFOD1,SLC6A2"
TCGA.AA.3982	16	56342058	58836910	726	0.5087	SMALL-GAIN	NONFOCAL	56	"ADGRG1,ADGRG3,ADGRG5,AMFR,ARL2BP,BBS2,CCDC102A,CCDC113,CCL17,CCL22,CETP,CFAP20,CIAPIN1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,GINS3,GNAO1,GOT2,HERPUD1,KATNB1,KIFC3,LOC388282,MMP15,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NDRG4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,PRSS54,RSPRY1,SETD6,SLC12A3,SLC38A7,TEPP,USB1,ZNF319"
TCGA.T9.A92H	16	56398370	57117394	223	0.5707	SMALL-GAIN	NONFOCAL	20	"AMFR,BBS2,CETP,HERPUD1,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NLRC5,NUDT21,NUP93,OGFOD1,SLC12A3"
TCGA.A6.3808.01A	16	56468617	57735801	309	0.4356	SMALL-GAIN	NONFOCAL	36	"ADGRG1,ADGRG3,ADGRG5,ARL2BP,BBS2,CCDC102A,CCL17,CCL22,CETP,CIAPIN1,COQ9,CPNE2,CX3CL1,DOK4,DRC7,FAM192A,HERPUD1,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,NLRC5,NUDT21,NUP93,OGFOD1,PLLP,POLR2C,RSPRY1,SLC12A3"
TCGA.AA.A00L.01A	16	56832333	58283872	305	0.3789	SMALL-GAIN	NONFOCAL	33	"ADGRG1,ADGRG3,ADGRG5,ARL2BP,CCDC102A,CCDC113,CCL17,CCL22,CETP,CFAP20,CIAPIN1,CNGB1,COQ9,CPNE2,CSNK2A2,CX3CL1,DOK4,DRC7,FAM192A,HERPUD1,KATNB1,KIFC3,LOC388282,MMP15,NLRC5,NUP93,PLLP,POLR2C,RSPRY1,SLC12A3,TEPP,USB1,ZNF319"
TCGA.AA.A00A.01A	16	57115399	57598899	80	0.4375	SMALL-GAIN	NONFOCAL	15	"ADGRG5,ARL2BP,CCDC102A,CCL17,CCL22,CIAPIN1,COQ9,CPNE2,CX3CL1,DOK4,FAM192A,NLRC5,PLLP,POLR2C,RSPRY1"
TCGA.AA.A00D.01A	16	58036366	58757603	120	0.4898	SMALL-GAIN	NONFOCAL	12	"CCDC113,CFAP20,CNOT1,CSNK2A2,GINS3,GOT2,MMP15,NDRG4,PRSS54,SETD6,SLC38A7,USB1"
TCGA.AA.A00A.01A	16	58314090	90128319	1584	0.4293	SMALL-GAIN	NONFOCAL	272	Too-Many
TCGA.AA.A00L.01A	16	58552266	66621772	116	0.482	SMALL-GAIN	NONFOCAL	14	"BEAN1,CDH11,CDH5,CDH8,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CNOT1,GOT2,LOC729159,SETD6,SLC38A7,TK2"
TCGA.AA.A00Q.01A	16	58703943	67898982	304	0.4801	SMALL-GAIN	NONFOCAL	61	"ACD,AGRP,ATP6V0D1,B3GNT9,BEAN1,C16orf70,C16orf86,CA7,CBFB,CCDC79,CDH11,CDH16,CDH5,CDH8,CENPT,CES2,CES3,CES4A,CKLF,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,CTCF,DYNC1LI2,E2F4,ELMO3,ENKD1,EXOC3L1,FAM65A,FAM96B,FBXL8,FHOD1,GFOD2,GOT2,HSD11B2,HSF4,KCTD19,KIAA0895L,LOC729159,LRRC29,LRRC36,NAE1,NOL3,NUTF2,PARD6A,PDP2,PLEKHG4,RANBP10,RLTPR,RRAD,SLC38A7,SLC9A5,THAP11,TK2,TMEM208,TPPP3,TRADD,TSNAXIP1,ZDHHC1"
TCGA.D5.6532	16	60575073	78371607	5494	0.4716	SMALL-GAIN	NONFOCAL	163	Too-Many
TCGA.AA.3872	16	65719330	71110353	1113	0.4561	SMALL-GAIN	NONFOCAL	109	Too-Many
TCGA.AA.3866	16	65929146	70836369	901	0.3903	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AA.3982	16	66116590	70814357	778	0.5055	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AA.3844	16	66116590	70833948	784	0.5982	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AA.3850	16	66125661	70804765	771	0.41685	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AA.A00D.01A	16	66413191	72137479	741	0.4679	SMALL-GAIN	NONFOCAL	127	Too-Many
TCGA.AA.A00L.01A	16	66651134	67178682	93	0.5218	SMALL-GAIN	NONFOCAL	14	"C16orf70,CA7,CBFB,CCDC79,CDH16,CES2,CES3,CES4A,CMTM4,DYNC1LI2,FAM96B,NAE1,PDP2,RRAD"
TCGA.AA.A00L.01A	16	67644696	70190330	309	0.4692	SMALL-GAIN	NONFOCAL	52	"ACD,C16orf86,CDH1,CDH3,CENPT,CHTF8,CIRH1A,CLEC18A,COG8,CTCF,CTRL,CYB5B,DDX28,DPEP2,DPEP3,DUS2,EDC4,ENKD1,ESRP2,GFOD2,HAS3,LCAT,LOC100131303,NFAT5,NFATC3,NIP7,NOB1,NQO1,NRN1L,NUTF2,PARD6A,PDF,PDPR,PLA2G15,PRMT7,PSKH1,PSMB10,RANBP10,RLTPR,SLC12A4,SLC7A6,SLC7A6OS,SMPD3,SNTB2,TANGO6,TERF2,THAP11,TMED6,TSNAXIP1,VPS4A,WWP2,ZFP90"
TCGA.AG.A016.01A	16	67709011	90142216	1526	0.384	SMALL-GAIN	NONFOCAL	211	Too-Many
TCGA.AA.A00Q.01A	16	67919577	68387331	109	0.5029	SMALL-GAIN	NONFOCAL	17	"CTRL,DDX28,DPEP2,DPEP3,DUS2,ESRP2,LCAT,LOC100131303,NFATC3,NRN1L,PLA2G15,PRMT7,PSKH1,PSMB10,SLC12A4,SLC7A6,SLC7A6OS"
TCGA.AA.A00Q.01A	16	68591884	84024048	706	0.6003	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AG.A01W.01A	16	69130459	69950146	137	0.3791	SMALL-GAIN	NONFOCAL	15	"CHTF8,CIRH1A,COG8,CYB5B,HAS3,NFAT5,NIP7,NOB1,NQO1,PDF,SNTB2,TERF2,TMED6,VPS4A,WWP2"
TCGA.AA.A00L.01A	16	70514875	72120496	179	0.4751	SMALL-GAIN	NONFOCAL	23	"AP1G1,ATXN1L,CALB2,CHST4,CMTR2,COG4,DHODH,HP,HPR,HYDIN,IL34,IST1,MARVELD3,MTSS1L,PHLPP2,PKD1L3,SF3B3,TAT,TXNL4B,VAC14,ZNF19,ZNF23,ZNF821"
TCGA.A6.3808.01A	16	70820086	71782107	132	0.4648	SMALL-GAIN	NONFOCAL	11	"AP1G1,CALB2,CHST4,CMTR2,HYDIN,MARVELD3,PHLPP2,TAT,VAC14,ZNF19,ZNF23"
TCGA.AA.3846	16	71188798	80466600	4494	0.5109	SMALL-GAIN	NONFOCAL	54	"ADAMTS18,ADAT1,AP1G1,ATXN1L,BCAR1,C16orf47,CALB2,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMTR2,CNTNAP4,CTRB1,CTRB2,DHODH,DHX38,FA2H,GABARAPL2,GLG1,HP,HPR,HYDIN,IST1,KARS,LDHD,MAF,MARVELD3,MLKL,MON1B,NPIPB15,NUDT7,PHLPP2,PKD1L3,PMFBP1,PSMD7,RFWD3,SYCE1L,TAT,TERF2IP,TMEM170A,TMEM231,TXNL4B,VAT1L,WDR59,WWOX,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.D5.6538	16	71188798	85153823	7658	0.6011	SMALL-GAIN	NONFOCAL	91	"ADAD2,ADAMTS18,ADAT1,AP1G1,ATMIN,ATP2C2,ATXN1L,BCAR1,BCO1,C16orf46,C16orf47,CALB2,CDH13,CDYL2,CENPN,CFDP1,CHST4,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CMTR2,CNTNAP4,COTL1,CRISPLD2,CTRB1,CTRB2,DHODH,DHX38,DNAAF1,DYNLRB2,FA2H,FAM92B,GABARAPL2,GAN,GCSH,GLG1,HP,HPR,HSBP1,HSD17B2,HSDL1,HYDIN,IST1,KARS,KCNG4,KIAA0513,KLHL36,LDHD,MAF,MARVELD3,MBTPS1,MLKL,MLYCD,MON1B,MPHOSPH6,NECAB2,NPIPB15,NUDT7,OSGIN1,PHLPP2,PKD1L2,PKD1L3,PLCG2,PMFBP1,PSMD7,RFWD3,SDR42E1,SLC38A8,SYCE1L,TAF1C,TAT,TERF2IP,TLDC1,TMEM170A,TMEM231,TXNL4B,USP10,VAT1L,WDR59,WFDC1,WWOX,ZDHHC7,ZFHX3,ZFP1,ZNF19,ZNF23,ZNF821,ZNRF1"
TCGA.AA.3844	16	71372482	72162101	195	0.586	SMALL-GAIN	NONFOCAL	18	"AP1G1,ATXN1L,CALB2,CHST4,DHODH,DHX38,HP,HPR,IST1,MARVELD3,PHLPP2,PKD1L3,PMFBP1,TAT,TXNL4B,ZNF19,ZNF23,ZNF821"
TCGA.AA.A00L.01A	16	73161214	84882944	410	0.432	SMALL-GAIN	NONFOCAL	67	"ADAD2,ADAMTS18,ADAT1,ATMIN,ATP2C2,BCAR1,BCO1,C16orf46,C16orf47,CDH13,CDYL2,CENPN,CFDP1,CHST5,CHST6,CLEC18B,CLEC3A,CMC2,CMIP,CNTNAP4,COTL1,CRISPLD2,CTRB1,CTRB2,DNAAF1,DYNLRB2,FA2H,GABARAPL2,GAN,GCSH,GLG1,HSBP1,HSD17B2,HSDL1,KARS,KCNG4,KLHL36,LDHD,MAF,MBTPS1,MLKL,MLYCD,MON1B,MPHOSPH6,NECAB2,NPIPB15,NUDT7,OSGIN1,PKD1L2,PLCG2,PSMD7,RFWD3,SDR42E1,SLC38A8,SYCE1L,TAF1C,TERF2IP,TLDC1,TMEM170A,TMEM231,USP10,VAT1L,WDR59,WFDC1,WWOX,ZFP1,ZNRF1"
TCGA.AA.3844	16	74159492	75726135	383	0.6115	SMALL-GAIN	NONFOCAL	23	"ADAT1,BCAR1,CFDP1,CHST5,CHST6,CLEC18B,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,NPIPB15,PSMD7,RFWD3,TERF2IP,TMEM170A,TMEM231,WDR59,ZFP1,ZNRF1"
TCGA.AA.3982	16	74206061	75955367	414	0.5012	SMALL-GAIN	NONFOCAL	23	"ADAT1,BCAR1,CFDP1,CHST5,CHST6,CLEC18B,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,NPIPB15,PSMD7,RFWD3,TERF2IP,TMEM170A,TMEM231,WDR59,ZFP1,ZNRF1"
TCGA.AA.3850	16	74229152	75796960	379	0.44295	SMALL-GAIN	NONFOCAL	23	"ADAT1,BCAR1,CFDP1,CHST5,CHST6,CLEC18B,CTRB1,CTRB2,FA2H,GABARAPL2,GLG1,KARS,LDHD,MLKL,NPIPB15,PSMD7,RFWD3,TERF2IP,TMEM170A,TMEM231,WDR59,ZFP1,ZNRF1"
TCGA.A6.3808.01A	16	76311503	81050864	107	0.4826	SMALL-GAIN	NONFOCAL	13	"ADAMTS18,CDYL2,CENPN,CLEC3A,CMC2,CNTNAP4,DYNLRB2,MAF,MON1B,NUDT7,SYCE1L,VAT1L,WWOX"
TCGA.D5.6532	16	78469704	90163274	6662	0.4606	SMALL-GAIN	NONFOCAL	101	Too-Many
TCGA.AA.3846	16	80472106	90163274	5011	0.5362	SMALL-GAIN	NONFOCAL	99	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPBD1,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A00D.01A	16	81094759	90128319	463	0.5304	SMALL-GAIN	NONFOCAL	94	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3872	16	82797838	90163274	3536	0.4681	SMALL-GAIN	NONFOCAL	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3982	16	83424263	90163274	2961	0.5067	SMALL-GAIN	NONFOCAL	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3850	16	83810883	85920479	1021	0.44605	SMALL-GAIN	NONFOCAL	27	"ADAD2,ATP2C2,C16orf74,CDH13,COTL1,COX4I1,CRISPLD2,DNAAF1,EMC8,FAM92B,GINS2,GSE1,HSBP1,HSDL1,KCNG4,KIAA0513,KLHL36,MBTPS1,MLYCD,NECAB2,OSGIN1,SLC38A8,TAF1C,TLDC1,USP10,WFDC1,ZDHHC7"
TCGA.AA.3844	16	83822418	90163274	2607	0.6252	SMALL-GAIN	NONFOCAL	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A00Q.01A	16	84228466	89620846	274	0.4404	SMALL-GAIN	NONFOCAL	55	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDT1,COTL1,COX4I1,CRISPLD2,CTU2,CYBA,EMC8,FAM92B,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GINS2,GSE1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MTHFSD,MVD,PABPN1L,PIEZO1,RNF166,SLC22A31,SLC7A5,SNAI3,SPG7,TLDC1,TRAPPC2L,USP10,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF469,ZNF778"
TCGA.CL.5917	16	84447928	90163274	2232	0.4023	SMALL-GAIN	NONFOCAL	71	"ACSF3,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,IL17C,IRF8,JPH3,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.3850	16	85936977	90163274	1592	0.40555	SMALL-GAIN	NONFOCAL	57	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,IL17C,IRF8,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.D5.6538	16	86450821	90163274	1143	0.5468	SMALL-GAIN	NONFOCAL	56	"ACSF3,ANKRD11,APRT,BANP,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,IL17C,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A00L.01A	16	87364845	89960108	262	0.4127	SMALL-GAIN	NONFOCAL	44	"ACSF3,ANKRD11,APRT,BANP,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CHMP1A,CPNE7,CTU2,CYBA,DPEP1,FANCA,FBXO31,GALNS,IL17C,JPH3,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MVD,PABPN1L,PIEZO1,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.A6.2683	16	88808742	90163274	241	0.4764	SMALL-GAIN	NONFOCAL	34	"ACSF3,ANKRD11,APRT,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,LOC100129697,LOC100287036,MC1R,PABPN1L,PIEZO1,PRDM7,RPL13,SLC22A31,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZNF276,ZNF778"
TCGA.AM.5820	16	89726483	90118118	66	0.464	SMALL-GAIN	NONFOCAL	14	"CDK10,CENPBD1,DBNDD1,DEF8,FANCA,GAS8,MC1R,SPATA2L,SPATA33,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276"
TCGA.AA.A00Q.01A	16	89758167	90128319	105	0.4735	SMALL-GAIN	NONFOCAL	14	"CDK10,CENPBD1,DBNDD1,DEF8,FANCA,GAS8,MC1R,PRDM7,SPATA2L,SPIRE2,TCF25,TUBB3,VPS9D1,ZNF276"
TCGA.EI.6512	17	6887	1297471	269	0.4011	SMALL-GAIN	NONFOCAL	16	"ABR,BHLHA9,C17orf97,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,LOC100506388,NXN,RNMTL1,RPH3AL,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.AA.3850	17	6887	2922686	604	0.51265	SMALL-GAIN	NONFOCAL	43	"ABR,BHLHA9,C17orf97,CLUH,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.AA.3664	17	6887	4658970	1098	0.4593	SMALL-GAIN	NONFOCAL	83	"ABR,ALOX15,ANKFY1,ARRB2,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CXCL16,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,MED11,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PELP1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZMYND15,ZZEF1"
TCGA.AA.3941	17	6887	10764004	3022	0.4036	SMALL-GAIN	NONFOCAL	232	Too-Many
TCGA.AG.3605.01A	17	63577	1583981	14	0.5175	SMALL-GAIN	NONFOCAL	23	"ABR,BHLHA9,C17orf97,CRK,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,PITPNA,PRPF8,RILP,RNMTL1,RPH3AL,SCARF1,SLC43A2,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.AA.A00A.01A	17	177196	7399228	929	0.4031	SMALL-GAIN	NONFOCAL	163	Too-Many
TCGA.AA.3968	17	2428507	5601920	812	0.4015	SMALL-GAIN	NONFOCAL	75	"ALOX15,ANKFY1,ARRB2,ASPA,ATP2A3,C17orf107,C17orf85,C1QBP,CAMKK1,CAMTA2,CHRNE,CLUH,CTNS,CXCL16,CYB5D2,DERL2,DHX33,EMC6,ENO3,GGT6,GLTPD2,GP1BA,GSG2,INCA1,ITGAE,KIF1C,LOC728392,MED11,MINK1,MIS12,MYBBP1A,NLRP1,NUP88,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,P2RX1,P2RX5,PAFAH1B1,PELP1,PFN1,PLD2,PSMB6,RABEP1,RAP1GAP2,RNF167,RPAIN,SCIMP,SHPK,SLC25A11,SLC52A1,SMTNL2,SPAG7,SPATA22,SPNS2,SPNS3,TAX1BP3,TM4SF5,TRPV1,TRPV3,UBE2G1,USP6,VMO1,ZFP3,ZMYND15,ZNF232,ZNF594,ZZEF1"
TCGA.AA.A01Q.01A	17	2597163	3346426	22	0.5135	SMALL-GAIN	NONFOCAL	13	"CLUH,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,RAP1GAP2,SPATA22"
TCGA.AA.A00N.01A	17	2808523	3343404	37	0.5732	SMALL-GAIN	NONFOCAL	12	"OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,RAP1GAP2,SPATA22"
TCGA.AA.A00A.01A	17	7484255	7726708	101	0.4458	SMALL-GAIN	NONFOCAL	11	"ATP1B2,CD68,DNAH2,EFNB3,FXR2,MPDU1,SAT2,SHBG,SOX15,TP53,WRAP53"
TCGA.AA.A00A.01A	17	7811672	8347536	157	0.3925	SMALL-GAIN	NONFOCAL	24	"ALOX12B,ALOX15B,ALOXE3,ARHGEF15,AURKB,C17orf59,CHD3,CNTROB,CTC1,GUCY2D,HES7,KCNAB3,KRBA2,NDEL1,ODF4,PER1,PFAS,RANGRF,RNF222,RPL26,SLC25A35,TMEM107,TRAPPC1,VAMP2"
TCGA.AA.A00A.01A	17	8701751	29159302	1236	0.4394	SMALL-GAIN	NONFOCAL	175	Too-Many
TCGA.A6.6652	17	9481705	10944406	614	0.6606	SMALL-GAIN	NONFOCAL	16	"ADPRM,CFAP52,DHRS7C,GAS7,GLP2R,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,PIRT,RCVRN,SCO1,TMEM220,USP43"
TCGA.A6.3808.01A	17	11144763	15406154	178	0.39	SMALL-GAIN	NONFOCAL	16	"ARHGAP44,CDRT15,CDRT4,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYOCD,PMP22,SHISA6,TEKT3,TVP23C,TVP23C-CDRT4,ZNF18"
TCGA.AA.3941	17	15099022	20742619	932	0.4273	SMALL-GAIN	NONFOCAL	73	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,CCDC144A,CDRT1,CDRT15L2,CDRT4,CENPV,COPS3,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3850	17	15143414	20739233	918	0.43675	SMALL-GAIN	NONFOCAL	73	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,CCDC144A,CDRT1,CDRT15L2,CDRT4,CENPV,COPS3,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3975	17	16401681	18289922	404	0.5122	SMALL-GAIN	NONFOCAL	28	"ALKBH5,ATPAF2,CCDC144A,COPS3,DRG2,EVPLL,FLCN,FLII,GID4,LLGL1,LRRC48,MED9,MIEF2,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SHMT1,SMCR8,SREBF1,TNFRSF13B,TOM1L2,TOP3A,ZNF287,ZNF624"
TCGA.AA.3856	17	18917914	19550269	73	0.6114	SMALL-GAIN	NONFOCAL	11	"B9D1,EPN2,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,RNF112,SLC47A1,SLC5A10"
TCGA.AA.3812	17	19969734	39832675	3732	0.483	SMALL-GAIN	NONFOCAL	284	Too-Many
TCGA.CM.6166	17	21180725	39197759	3366	0.3939	SMALL-GAIN	NONFOCAL	234	Too-Many
TCGA.AA.A01F.01A	17	21320498	26696676	71	0.4878	SMALL-GAIN	NONFOCAL	16	"C17orf51,IFT20,KCNJ12,KSR1,LGALS9,LYRM9,MTRNR2L1,NLK,NOS2,POLDIP2,SEBOX,TMEM199,TMEM97,TNFAIP1,VTN,WSB1"
TCGA.D5.5541	17	21519099	81048658	14195	0.4136	SMALL-GAIN	NONFOCAL	818	Too-Many
TCGA.AA.3529	17	21709232	27814495	442	0.6236	SMALL-GAIN	NONFOCAL	45	"ALDOC,CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MTRNR2L1,MYO18A,NARR,NEK8,NLK,NOS2,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.AD.6888	17	21717726	35048712	2438	0.4316	SMALL-GAIN	NONFOCAL	138	Too-Many
TCGA.A6.5666	17	21721971	44162596	4305	0.3928	SMALL-GAIN	NONFOCAL	390	Too-Many
TCGA.DC.6154	17	21858122	81048658	14145	0.4244	SMALL-GAIN	NONFOCAL	818	Too-Many
TCGA.AA.3496	17	22108782	27637717	376	0.5451	SMALL-GAIN	NONFOCAL	43	"ALDOC,CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TIAF1,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1"
TCGA.AG.4015	17	25313689	28794019	489	0.4151	SMALL-GAIN	NONFOCAL	56	"ABHD15,ALDOC,ANKRD13B,BLMH,CORO6,CPD,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NARR,NEK8,NLK,NOS2,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN,WSB1"
TCGA.AA.3975	17	25313689	36034364	2646	0.4706	SMALL-GAIN	NONFOCAL	145	Too-Many
TCGA.AG.A01Y	17	25313689	57963536	7969	0.4472	SMALL-GAIN	NONFOCAL	536	Too-Many
TCGA.A6.2677	17	25313689	64968047	8778	0.4405	SMALL-GAIN	NONFOCAL	597	Too-Many
TCGA.A6.5656	17	25343370	31450751	1003	0.4493	SMALL-GAIN	NONFOCAL	82	"ABHD15,ADAP2,ALDOC,ANKRD13B,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPACA3,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.D5.6929	17	25343370	38084797	2999	0.5102	SMALL-GAIN	NONFOCAL	190	Too-Many
TCGA.A6.6652	17	25343370	40737116	3612	0.4138	SMALL-GAIN	NONFOCAL	304	Too-Many
TCGA.D5.6532	17	25343370	53885116	6791	0.4607	SMALL-GAIN	NONFOCAL	494	Too-Many
TCGA.AA.A01S	17	25343370	54158455	6931	0.52745	SMALL-GAIN	NONFOCAL	494	Too-Many
TCGA.AG.3575	17	25343370	64047375	9090	0.4398	SMALL-GAIN	NONFOCAL	593	Too-Many
TCGA.CA.6715	17	25343370	77760763	13435	0.5105	SMALL-GAIN	NONFOCAL	739	Too-Many
TCGA.QG.A5YX	17	25343370	80985323	13997	0.4868	SMALL-GAIN	NONFOCAL	816	Too-Many
TCGA.CM.6676	17	25343370	81048658	14104	0.386	SMALL-GAIN	NONFOCAL	817	Too-Many
TCGA.NH.A6GB	17	25343370	81048658	14135	0.4088	SMALL-GAIN	NONFOCAL	817	Too-Many
TCGA.NH.A8F7	17	25343370	81048658	14068	0.3939	SMALL-GAIN	NONFOCAL	817	Too-Many
TCGA.DM.A1D0	17	25346691	31305502	914	0.5628	SMALL-GAIN	NONFOCAL	80	"ABHD15,ADAP2,ALDOC,ANKRD13B,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,EVI2A,EVI2B,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,KSR1,LGALS9,LRRC37B,LYRM9,MYO18A,MYO1D,NARR,NEK8,NF1,NLK,NOS2,NSRP1,NUFIP2,OMG,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,PSMD11,RAB11FIP4,RAB34,RHBDL3,RHOT1,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,SUZ12,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMEM98,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,UTP6,VTN,WSB1,ZNF207"
TCGA.AA.3982	17	25480652	39866335	3457	0.392	SMALL-GAIN	NONFOCAL	272	Too-Many
TCGA.AA.3956	17	25551282	39896061	3467	0.4452	SMALL-GAIN	NONFOCAL	274	Too-Many
TCGA.AG.3906.01A	17	25621341	26881201	139	0.4222	SMALL-GAIN	NONFOCAL	19	"FOXN1,IFT20,KSR1,LGALS9,LYRM9,NLK,NOS2,PIGS,POLDIP2,SARM1,SEBOX,SLC13A2,SLC46A1,TMEM199,TMEM97,TNFAIP1,UNC119,VTN,WSB1"
TCGA.A6.5660	17	25757874	39763272	3388	0.5173	SMALL-GAIN	NONFOCAL	268	Too-Many
TCGA.AZ.6600	17	25787233	33818129	2061	0.4951	SMALL-GAIN	NONFOCAL	103	Too-Many
TCGA.AA.A01F.01A	17	26722902	35985908	946	0.4304	SMALL-GAIN	NONFOCAL	132	Too-Many
TCGA.AA.A00D.01A	17	26856060	27042429	117	0.5907	SMALL-GAIN	NONFOCAL	11	"ALDOC,FOXN1,KIAA0100,PIGS,PROCA1,RAB34,SDF2,SGK494,SPAG5,SUPT6H,UNC119"
TCGA.AG.3891.01A	17	26904979	27188325	127	0.4563	SMALL-GAIN	NONFOCAL	14	"ERAL1,FAM222B,KIAA0100,NARR,NEK8,PROCA1,RAB34,RPL23A,SDF2,SGK494,SPAG5,SUPT6H,TLCD1,TRAF4"
TCGA.AA.A00D.01A	17	27061759	27579030	54	0.3855	SMALL-GAIN	NONFOCAL	12	"CRYBA1,DHRS13,ERAL1,FAM222B,FLOT2,MYO18A,NEK8,PHF12,PIPOX,SEZ6,TIAF1,TRAF4"
TCGA.AG.3906.01A	17	27185354	27869532	115	0.4595	SMALL-GAIN	NONFOCAL	11	"CRYBA1,DHRS13,ERAL1,FLOT2,MYO18A,NUFIP2,PHF12,PIPOX,SEZ6,TAOK1,TIAF1"
TCGA.AF.2689	17	27238099	28349094	142	0.436	SMALL-GAIN	NONFOCAL	15	"ABHD15,ANKRD13B,CORO6,CRYBA1,EFCAB5,GIT1,MYO18A,NUFIP2,PHF12,PIPOX,SEZ6,SSH2,TAOK1,TIAF1,TP53I13"
TCGA.AA.A00D.01A	17	27889577	29159302	115	0.4732	SMALL-GAIN	NONFOCAL	16	"ABHD15,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,EFCAB5,GIT1,GOSR1,NSRP1,SLC6A4,SSH2,TBC1D29,TMIGD1,TP53I13"
TCGA.AG.3906.01A	17	27909669	29496862	169	0.4677	SMALL-GAIN	NONFOCAL	18	"ADAP2,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,EFCAB5,GIT1,GOSR1,NF1,NSRP1,RNF135,SLC6A4,SSH2,TBC1D29,TEFM,TMIGD1"
TCGA.AA.3496	17	28860579	34080814	1700	0.481	SMALL-GAIN	NONFOCAL	52	"ADAP2,AP2B1,ASIC2,ATAD5,C17orf102,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,CDK5R1,COPRS,CRLF3,EVI2A,EVI2B,FNDC8,GAS2L2,LIG3,LRRC37B,MYO1D,NF1,NLE1,OMG,PEX12,PSMD11,RAB11FIP4,RAD51D,RASL10B,RFFL,RHBDL3,RHOT1,RNF135,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SPACA3,SUZ12,TBC1D29,TEFM,TMEM132E,TMEM98,UNC45B,UTP6,ZNF207,ZNF830"
TCGA.AA.A00A.01A	17	29221610	38854753	959	0.5108	SMALL-GAIN	NONFOCAL	152	Too-Many
TCGA.AA.A00Q.01A	17	29528018	32688757	214	0.3841	SMALL-GAIN	NONFOCAL	25	"ASIC2,C17orf75,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CDK5R1,COPRS,EVI2A,EVI2B,LRRC37B,MYO1D,NF1,OMG,PSMD11,RAB11FIP4,RHBDL3,RHOT1,SPACA3,SUZ12,TMEM98,UTP6,ZNF207"
TCGA.AA.A00Z.01A	17	29631243	40871073	56	0.4607	SMALL-GAIN	NONFOCAL	246	Too-Many
TCGA.DM.A0XD	17	32180475	44162596	2795	0.4213	SMALL-GAIN	NONFOCAL	308	Too-Many
TCGA.DC.6682	17	32862454	34824603	475	0.4371	SMALL-GAIN	NONFOCAL	43	"AP2B1,C17orf102,C17orf50,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCT6B,FNDC8,GAS2L2,HEATR9,LIG3,LOC101060321,LYZL6,MMP28,NLE1,PEX12,RAD51D,RASL10B,RDM1,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,TAF15,TBC1D3B,TBC1D3F,TBC1D3H,TMEM132E,UNC45B,ZNF830"
TCGA.AY.A8YK	17	33065993	49994257	3615	0.4074	SMALL-GAIN	NONFOCAL	395	Too-Many
TCGA.AG.4009.01A	17	34100133	34397768	58	0.5502	SMALL-GAIN	NONFOCAL	11	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL5,HEATR9,LYZL6,MMP28,RDM1,TAF15"
TCGA.AG.3611.01A	17	34195604	34851020	41	0.4061	SMALL-GAIN	NONFOCAL	20	"CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,HEATR9,LOC101060321,LYZL6,RDM1,TBC1D3B,TBC1D3F,TBC1D3H,ZNHIT3"
TCGA.CA.5254	17	34234952	36941581	610	0.583	SMALL-GAIN	NONFOCAL	50	"AATF,ACACA,ARHGAP23,C17orf78,C17orf96,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CISD3,DDX52,DHRS11,DUSP14,GGNBP2,GPR179,HNF1B,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LYZL6,MLLT6,MRM1,MRPL45,MYO19,PCGF2,PIGW,PIP4K2B,PSMB3,RDM1,SOCS7,SRCIN1,SYNRG,TADA2A,TBC1D3,TBC1D3B,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,ZNHIT3"
TCGA.AA.3496	17	34477479	81048658	11776	0.4737	SMALL-GAIN	NONFOCAL	694	Too-Many
TCGA.DC.6682	17	35071036	49945837	3144	0.4397	SMALL-GAIN	NONFOCAL	351	Too-Many
TCGA.AA.3529	17	35477764	39352671	786	0.5805	SMALL-GAIN	NONFOCAL	109	Too-Many
TCGA.AA.3850	17	35572412	38701753	518	0.41295	SMALL-GAIN	NONFOCAL	71	"ACACA,ARHGAP23,ARL5C,C17orf78,C17orf96,C17orf98,CACNB1,CASC3,CDC6,CDK12,CISD3,CSF3,CWC25,DDX52,DUSP14,ERBB2,FBXL20,FBXO47,GJD3,GPR179,GRB7,GSDMA,GSDMB,HNF1B,IGFBP4,IKZF3,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LRRC3C,MED1,MED24,MIEN1,MLLT6,MRPL45,MSL1,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SOCS7,SRCIN1,STAC2,STARD3,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,THRA,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AA.3875	17	35808557	36934123	229	0.6075	SMALL-GAIN	NONFOCAL	26	"ARHGAP23,C17orf96,CISD3,DDX52,DUSP14,GPR179,HNF1B,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRPL45,PCGF2,PIP4K2B,PSMB3,SOCS7,SRCIN1,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AG.3902	17	35848254	38410063	434	0.4251	SMALL-GAIN	NONFOCAL	62	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CASC3,CDK12,CISD3,CSF3,CWC25,DDX52,DUSP14,ERBB2,FBXL20,FBXO47,GPR179,GRB7,GSDMA,GSDMB,HNF1B,IKZF3,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LRRC3C,MED1,MED24,MIEN1,MLLT6,MRPL45,MSL1,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RPL19,RPL23,SOCS7,SRCIN1,STAC2,STARD3,SYNRG,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,THRA,WIPF2,ZPBP2"
TCGA.AA.A00Q.01A	17	35872385	37119106	127	0.4067	SMALL-GAIN	NONFOCAL	30	"ARHGAP23,C17orf96,C17orf98,CISD3,CWC25,DDX52,DUSP14,FBXO47,GPR179,HNF1B,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MLLT6,MRPL45,PCGF2,PIP4K2B,PSMB3,RPL23,SOCS7,SRCIN1,SYNRG,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AG.3909.01A	17	35986774	36462449	19	0.3982	SMALL-GAIN	NONFOCAL	13	"DDX52,HNF1B,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MRPL45,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AA.A00D.01A	17	35988568	38024552	230	0.4574	SMALL-GAIN	NONFOCAL	47	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CDK12,CISD3,CWC25,DDX52,ERBB2,FBXL20,FBXO47,GPR179,GRB7,HNF1B,IKZF3,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MED1,MIEN1,MLLT6,MRPL45,NEUROD2,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,RPL19,RPL23,SOCS7,SRCIN1,STAC2,STARD3,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,ZPBP2"
TCGA.AG.3906.01A	17	35990021	36714412	51	0.615	SMALL-GAIN	NONFOCAL	17	"ARHGAP23,DDX52,GPR179,HNF1B,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MRPL45,SOCS7,SRCIN1,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.AA.A01F.01A	17	36059054	38950043	398	0.4237	SMALL-GAIN	NONFOCAL	73	"ARHGAP23,ARL5C,C17orf96,C17orf98,CACNB1,CASC3,CCR7,CDC6,CDK12,CISD3,CSF3,CWC25,ERBB2,FBXL20,FBXO47,GJD3,GPR179,GRB7,GSDMA,GSDMB,HNF1B,IGFBP4,IKZF3,KRT222,KRT24,KRT25,KRT26,KRT27,KRT28,LASP1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LRRC3C,MED1,MED24,MIEN1,MLLT6,MRPL45,MSL1,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SMARCE1,SOCS7,SRCIN1,STAC2,STARD3,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,TCAP,THRA,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AG.3891.01A	17	36878910	38854753	398	0.3933	SMALL-GAIN	NONFOCAL	52	"ARL5C,C17orf98,CACNB1,CASC3,CCR7,CDC6,CDK12,CISD3,CSF3,CWC25,ERBB2,FBXL20,FBXO47,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,KRT222,KRT24,LASP1,LRRC3C,MED1,MED24,MIEN1,MLLT6,MSL1,NEUROD2,NR1D1,ORMDL3,PCGF2,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,SMARCE1,STAC2,STARD3,TCAP,THRA,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AA.3930.01A	17	36993346	37676167	116	0.4212	SMALL-GAIN	NONFOCAL	12	"ARL5C,C17orf98,CACNB1,CDK12,FBXL20,FBXO47,LASP1,MED1,PLXDC1,RPL19,RPL23,STAC2"
TCGA.AG.3906.01A	17	37111061	37885717	134	0.4928	SMALL-GAIN	NONFOCAL	17	"ARL5C,CACNB1,CDK12,ERBB2,FBXL20,FBXO47,MED1,MIEN1,NEUROD2,PGAP3,PLXDC1,PNMT,PPP1R1B,RPL19,STAC2,STARD3,TCAP"
TCGA.AZ.6600	17	37149572	38716560	215	0.4446	SMALL-GAIN	NONFOCAL	39	"ARL5C,CACNB1,CASC3,CCR7,CDC6,CDK12,CSF3,ERBB2,FBXL20,GJD3,GRB7,GSDMA,GSDMB,IGFBP4,IKZF3,LRRC3C,MED1,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PLXDC1,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,RPL19,STAC2,STARD3,TCAP,THRA,TNS4,TOP2A,WIPF2,ZPBP2"
TCGA.AA.3875	17	37349654	38480656	136	0.5612	SMALL-GAIN	NONFOCAL	32	"CACNB1,CASC3,CDC6,CDK12,CSF3,ERBB2,FBXL20,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED1,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PNMT,PPP1R1B,PSMD3,RAPGEFL1,RARA,RPL19,STAC2,STARD3,TCAP,THRA,WIPF2,ZPBP2"
TCGA.AG.4009.01A	17	37866053	38256251	109	0.4368	SMALL-GAIN	NONFOCAL	14	"CSF3,ERBB2,GRB7,GSDMA,GSDMB,IKZF3,LRRC3C,MED24,MIEN1,NR1D1,ORMDL3,PSMD3,THRA,ZPBP2"
TCGA.CA.6719	17	38023440	40447499	570	0.386	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AG.3906.01A	17	38244445	38786445	112	0.6255	SMALL-GAIN	NONFOCAL	14	"CASC3,CCR7,CDC6,GJD3,IGFBP4,MSL1,NR1D1,RAPGEFL1,RARA,SMARCE1,THRA,TNS4,TOP2A,WIPF2"
TCGA.D5.6929	17	38423478	39947008	453	0.6264	SMALL-GAIN	NONFOCAL	75	"CCR7,CDC6,EIF1,GAST,GJD3,HAP1,IGFBP4,JUP,KRT10,KRT12,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT20,KRT222,KRT23,KRT24,KRT25,KRT26,KRT27,KRT28,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT39,KRT40,KRT9,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,RARA,SMARCE1,TMEM99,TNS4,TOP2A,WIPF2"
TCGA.AG.3581	17	38480656	40853170	571	0.3921	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AG.4009.01A	17	38546197	38955134	92	0.4125	SMALL-GAIN	NONFOCAL	11	"CCR7,IGFBP4,KRT222,KRT24,KRT25,KRT26,KRT27,KRT28,SMARCE1,TNS4,TOP2A"
TCGA.AA.A02K.01A	17	38922744	40823363	485	0.4213	SMALL-GAIN	NONFOCAL	95	"ACLY,ATP6V0A1,CNP,COASY,DHX58,DNAJC7,EIF1,FAM134C,FKBP10,GAST,GHDC,HAP1,HCRT,HSD17B1,HSPB9,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT10,KRT12,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT20,KRT23,KRT26,KRT27,KRT28,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT39,KRT40,KRT9,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,MLX,NAGLU,NKIRAS2,NT5C3B,P3H4,PLEKHH3,PSMC3IP,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TMEM99,TTC25,TUBG1,TUBG2,ZNF385C"
TCGA.AA.A010.01A	17	39017866	39215864	42	0.6311	SMALL-GAIN	NONFOCAL	15	"KRT12,KRT20,KRT23,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP3-1,KRTAP3-2,KRTAP3-3"
TCGA.AG.3909.01A	17	39017866	39503068	81	0.3813	SMALL-GAIN	NONFOCAL	39	"KRT12,KRT20,KRT23,KRT33A,KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AA.A00Q.01A	17	39122619	39323800	21	0.5978	SMALL-GAIN	NONFOCAL	22	"KRT39,KRT40,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP3-1,KRTAP3-2,KRTAP3-3,KRTAP4-11,KRTAP4-12,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9"
TCGA.AA.3869	17	39158376	41036278	386	0.3786	SMALL-GAIN	NONFOCAL	95	"ACLY,AOC2,AOC3,ATP6V0A1,BECN1,CCR10,CNP,CNTD1,CNTNAP1,COA3,COASY,DHX58,DNAJC7,EIF1,EZH1,FAM134C,FKBP10,GAST,GHDC,HAP1,HCRT,HSD17B1,HSPB9,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP1-5,KRTAP16-1,KRTAP17-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP3-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,MLX,NAGLU,NKIRAS2,NT5C3B,P3H4,PLEKHH3,PSMC3IP,PSME3,PTRF,RAB5C,RAMP2,STAT3,STAT5A,STAT5B,TTC25,TUBG1,TUBG2,VPS25,WNK4,ZNF385C"
TCGA.CM.6166	17	39211907	40797405	342	0.4103	SMALL-GAIN	NONFOCAL	74	"ACLY,ATP6V0A1,CNP,COASY,DHX58,DNAJC7,EIF1,FAM134C,FKBP10,GAST,GHDC,HAP1,HCRT,HSD17B1,HSPB9,JUP,KAT2A,KCNH4,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP16-1,KRTAP17-1,KRTAP2-3,KRTAP2-4,KRTAP29-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,MLX,NAGLU,NKIRAS2,NT5C3B,P3H4,PSMC3IP,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TTC25,TUBG1,ZNF385C"
TCGA.CM.5341	17	39235388	40121273	241	0.4728	SMALL-GAIN	NONFOCAL	50	"ACLY,CNP,EIF1,FKBP10,GAST,HAP1,JUP,KLHL10,KLHL11,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9,KRTAP9-1,KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9,NT5C3B,P3H4,TTC25"
TCGA.AG.4009.01A	17	39463935	39925220	113	0.6479	SMALL-GAIN	NONFOCAL	22	"EIF1,GAST,HAP1,JUP,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,KRT36,KRT37,KRT38,KRT9,KRTAP16-1,KRTAP17-1"
TCGA.AA.A00D.01A	17	39471603	45387439	882	0.3796	SMALL-GAIN	NONFOCAL	147	Too-Many
TCGA.AZ.6607	17	39484620	49043347	1886	0.4032	SMALL-GAIN	NONFOCAL	224	Too-Many
TCGA.AA.3968	17	39643884	44856640	886	0.4201	SMALL-GAIN	NONFOCAL	132	Too-Many
TCGA.AA.A010.01A	17	39648514	39925643	64	0.4775	SMALL-GAIN	NONFOCAL	11	"EIF1,GAST,HAP1,JUP,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT9"
TCGA.AA.3850	17	39765485	46248993	1148	0.44525	SMALL-GAIN	NONFOCAL	151	Too-Many
TCGA.AA.3956	17	39907732	44231325	789	0.5648	SMALL-GAIN	NONFOCAL	115	Too-Many
TCGA.AA.3982	17	39907732	44353884	818	0.5856	SMALL-GAIN	NONFOCAL	115	Too-Many
TCGA.AA.3812	17	39947008	70507162	7828	0.4929	SMALL-GAIN	NONFOCAL	345	Too-Many
TCGA.CA.5254	17	39949515	40797460	116	0.5035	SMALL-GAIN	NONFOCAL	30	"ACLY,ATP6V0A1,CNP,COASY,DHX58,DNAJC7,FAM134C,FKBP10,GHDC,HCRT,HSD17B1,HSPB9,KAT2A,KCNH4,KLHL10,KLHL11,MLX,NAGLU,NKIRAS2,NT5C3B,P3H4,PSMC3IP,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TTC25,TUBG1,ZNF385C"
TCGA.AG.3906.01A	17	40049248	40666260	164	0.5568	SMALL-GAIN	NONFOCAL	18	"ACLY,ATP6V0A1,CNP,DHX58,DNAJC7,GHDC,HCRT,HSPB9,KAT2A,KCNH4,NKIRAS2,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TTC25,ZNF385C"
TCGA.F4.6704	17	40232213	40782082	69	0.4776	SMALL-GAIN	NONFOCAL	19	"ATP6V0A1,COASY,DHX58,FAM134C,GHDC,HCRT,HSD17B1,HSPB9,KAT2A,KCNH4,MLX,NAGLU,PSMC3IP,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TUBG1"
TCGA.AA.A00A.01A	17	40262701	40673005	104	0.4507	SMALL-GAIN	NONFOCAL	12	"ATP6V0A1,DHX58,GHDC,HCRT,HSPB9,KAT2A,KCNH4,PTRF,RAB5C,STAT3,STAT5A,STAT5B"
TCGA.AA.A00A.01A	17	40692918	45055969	570	0.4145	SMALL-GAIN	NONFOCAL	100	"AARSD1,ACBD4,ADAM11,AOC2,AOC3,ARHGAP27,ARL17A,ARL17B,ARL4D,ASB16,ATXN7L3,BECN1,BRCA1,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CCR10,CD300LG,CNTD1,CNTNAP1,COA3,COASY,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,EZH1,FAM134C,FAM171A2,FMNL1,FZD2,G6PC,G6PC3,GFAP,GJC1,GOSR2,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,HSD17B1,IFI35,ITGA2B,KANSL1,KIF18B,LRRC37A,LRRC37A2,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MLX,MPP2,MPP3,NAGLU,NAGS,NBR1,NMT1,NSF,PLCD3,PLEKHH3,PLEKHM1,PPY,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PYY,RAMP2,RND2,RPL27,RPRML,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,SPPL2C,STH,TMEM101,TMEM106A,TMUB2,TUBG1,TUBG2,UBTF,VAT1,VPS25,WNK4,WNT3,WNT9B"
TCGA.AG.3906.01A	17	40704921	41164159	167	0.6152	SMALL-GAIN	NONFOCAL	27	"AARSD1,AOC2,AOC3,BECN1,CCR10,CNTD1,CNTNAP1,COA3,COASY,EZH1,FAM134C,G6PC,HSD17B1,IFI35,MLX,PLEKHH3,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,RAMP2,RPL27,RUNDC1,TUBG1,TUBG2,VPS25,WNK4"
TCGA.AA.A02K.01A	17	40833729	41369659	188	0.4158	SMALL-GAIN	NONFOCAL	24	"AARSD1,AOC2,AOC3,BECN1,BRCA1,CCR10,CNTD1,CNTNAP1,COA3,EZH1,G6PC,IFI35,NBR1,PSME3,PTGES3L,PTGES3L-AARSD1,RAMP2,RND2,RPL27,RUNDC1,TMEM106A,VAT1,VPS25,WNK4"
TCGA.A6.6652	17	41188341	44162596	602	0.4037	SMALL-GAIN	NONFOCAL	61	"ACBD4,ADAM11,ARHGAP27,ARL4D,ASB16,ATXN7L3,BRCA1,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CD300LG,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,FAM171A2,FMNL1,FZD2,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,ITGA2B,KANSL1,KIF18B,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MPP2,MPP3,NAGS,NBR1,NMT1,PLCD3,PLEKHM1,PPY,PYY,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,SPPL2C,STH,TMEM101,TMEM106A,TMUB2,UBTF"
TCGA.AG.3891.01A	17	41981726	42848908	159	0.4608	SMALL-GAIN	NONFOCAL	25	"ADAM11,ASB16,ATXN7L3,C17orf104,C17orf53,CCDC43,DBF4B,FAM171A2,FZD2,G6PC3,GPATCH8,GRN,HDAC5,ITGA2B,LSM12,MPP2,NAGS,PPY,PYY,RUNDC3A,SLC25A39,SLC4A1,TMEM101,TMUB2,UBTF"
TCGA.AG.3906.01A	17	43331735	46606860	315	0.4577	SMALL-GAIN	NONFOCAL	42	"ARHGAP27,ARL17A,ARL17B,CBX1,CDC27,CDK5RAP3,COPZ2,CRHR1,EFCAB13,GOSR2,HOXB1,ITGB3,KANSL1,KPNB1,LRRC37A,LRRC37A2,LRRC46,MAP3K14,MAPT,MGC57346-CRHR1,MRPL10,MYL4,NFE2L1,NPEPPS,NSF,OSBPL7,PLEKHM1,PNPO,PRR15L,RPRML,SCRN2,SKAP1,SNX11,SP2,SP6,SPATA32,SPPL2C,STH,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.AG.3581	17	44162596	47240492	555	0.4251	SMALL-GAIN	NONFOCAL	52	"ARL17A,ARL17B,ATP5G1,B4GALNT2,CALCOCO2,CBX1,CDC27,CDK5RAP3,COPZ2,EFCAB13,GIP,GOSR2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGB3,KANSL1,KPNB1,LRRC37A,LRRC37A2,LRRC46,MRPL10,MYL4,NFE2L1,NPEPPS,NSF,OSBPL7,PNPO,PRAC1,PRAC2,PRR15L,RPRML,SCRN2,SKAP1,SNF8,SNX11,SP2,SP6,TBKBP1,TBX21,TTLL6,UBE2Z,WNT3,WNT9B"
TCGA.A6.5666	17	44269545	81048658	9824	0.3829	SMALL-GAIN	NONFOCAL	429	Too-Many
TCGA.AA.3956	17	44353884	81048658	9826	0.4273	SMALL-GAIN	NONFOCAL	428	Too-Many
TCGA.DM.A0XD	17	44789284	46485602	354	0.4081	SMALL-GAIN	NONFOCAL	28	"ARL17A,CBX1,CDC27,CDK5RAP3,COPZ2,EFCAB13,GOSR2,ITGB3,KPNB1,LRRC46,MRPL10,MYL4,NFE2L1,NPEPPS,NSF,OSBPL7,PNPO,PRR15L,RPRML,SCRN2,SKAP1,SNX11,SP2,SP6,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.A6.6652	17	44789284	63613034	4647	0.4257	SMALL-GAIN	NONFOCAL	200	Too-Many
TCGA.AA.3982	17	44822661	46252501	299	0.4809	SMALL-GAIN	NONFOCAL	28	"ARL17A,CBX1,CDC27,CDK5RAP3,COPZ2,EFCAB13,GOSR2,ITGB3,KPNB1,LRRC46,MRPL10,MYL4,NFE2L1,NPEPPS,NSF,OSBPL7,PNPO,PRR15L,RPRML,SCRN2,SKAP1,SNX11,SP2,SP6,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.AA.A00D.01A	17	45759669	48559969	356	0.4384	SMALL-GAIN	NONFOCAL	66	"ABI3,ACSF2,ATP5G1,B4GALNT2,CALCOCO2,CBX1,CDK5RAP3,CHAD,COL1A1,COPZ2,DLX3,DLX4,EME1,FAM117A,FLJ45513,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,KAT7,KPNB1,LRRC46,LRRC59,MRPL10,MRPL27,NFE2L1,NGFR,NXPH3,OSBPL7,PDK2,PHB,PHOSPHO1,PNPO,PPP1R9B,PRAC1,PRAC2,PRR15L,RSAD1,SAMD14,SCRN2,SGCA,SKAP1,SLC35B1,SNF8,SNX11,SP2,SP6,SPOP,TAC4,TBKBP1,TBX21,TMEM92,TTLL6,UBE2Z,XYLT2,ZNF652"
TCGA.AA.A00A.01A	17	45819926	46865153	106	0.3853	SMALL-GAIN	NONFOCAL	28	"CBX1,CDK5RAP3,COPZ2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,LRRC46,MRPL10,NFE2L1,OSBPL7,PNPO,PRAC1,PRAC2,PRR15L,SCRN2,SKAP1,SNX11,SP2,SP6,TBX21,TTLL6"
TCGA.CM.6675	17	45916724	81048658	9583	0.5557	SMALL-GAIN	NONFOCAL	408	Too-Many
TCGA.AA.3982	17	46348057	49650199	745	0.4918	SMALL-GAIN	NONFOCAL	65	"ABCC3,ABI3,ACSF2,ANKRD40,ATP5G1,B4GALNT2,CACNA1G,CALCOCO2,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,KAT7,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NGFR,NME1,NME1-NME2,NME2,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,PRAC1,PRAC2,RSAD1,SAMD14,SGCA,SKAP1,SLC35B1,SNF8,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.CM.6166	17	46356363	47377875	208	0.442	SMALL-GAIN	NONFOCAL	25	"ABI3,ATP5G1,B4GALNT2,CALCOCO2,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,PHOSPHO1,PRAC1,PRAC2,SKAP1,SNF8,TTLL6,UBE2Z,ZNF652"
TCGA.AA.3850	17	46389952	49480305	687	0.42665	SMALL-GAIN	NONFOCAL	65	"ABCC3,ABI3,ACSF2,ANKRD40,ATP5G1,B4GALNT2,CACNA1G,CALCOCO2,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,ITGA3,KAT7,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NGFR,NME1,NME1-NME2,NME2,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,PRAC1,PRAC2,RSAD1,SAMD14,SGCA,SKAP1,SLC35B1,SNF8,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,TTLL6,UBE2Z,UTP18,WFIKKN2,XYLT2,ZNF652"
TCGA.AG.3598	17	46908227	81048658	9352	0.6197	SMALL-GAIN	NONFOCAL	384	Too-Many
TCGA.AA.A00A.01A	17	46940158	48606370	256	0.4468	SMALL-GAIN	NONFOCAL	37	"ABI3,ACSF2,ATP5G1,B4GALNT2,CALCOCO2,CHAD,COL1A1,DLX3,DLX4,EME1,FAM117A,FLJ45513,GIP,GNGT2,IGF2BP1,ITGA3,KAT7,LRRC59,MRPL27,MYCBPAP,NGFR,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,RSAD1,SAMD14,SGCA,SLC35B1,SNF8,SPOP,TAC4,TMEM92,UBE2Z,XYLT2,ZNF652"
TCGA.AG.3906.01A	17	47243464	47925209	71	0.4819	SMALL-GAIN	NONFOCAL	14	"ABI3,B4GALNT2,FAM117A,FLJ45513,GNGT2,KAT7,NGFR,NXPH3,PHB,PHOSPHO1,SLC35B1,SPOP,TAC4,ZNF652"
TCGA.AA.3968	17	47696819	49307325	353	0.6466	SMALL-GAIN	NONFOCAL	36	"ABCC3,ACSF2,ANKRD40,CACNA1G,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,ITGA3,KAT7,LRRC59,LUC7L3,MBTD1,MRPL27,MYCBPAP,NME1,NME1-NME2,NME2,PDK2,PPP1R9B,RSAD1,SAMD14,SGCA,SLC35B1,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,WFIKKN2,XYLT2"
TCGA.AA.3975	17	48023081	56195245	2767	0.4456	SMALL-GAIN	NONFOCAL	56	"ABCC3,ACSF2,AKAP1,ANKFN1,ANKRD40,C17orf112,C17orf67,CA10,CACNA1G,CCDC182,CHAD,COIL,COL1A1,COX11,CUEDC1,DGKE,DLX3,DLX4,DYNLL2,EME1,EPN3,HLF,ITGA3,KIF2B,LRRC59,LUC7L3,MBTD1,MMD,MRPL27,MRPS23,MSI2,MYCBPAP,NME1,NME1-NME2,NME2,NOG,PCTP,PDK2,PPP1R9B,RSAD1,SAMD14,SCPEP1,SGCA,SPAG9,SPATA20,SRSF1,STXBP4,TMEM100,TMEM92,TOB1,TOM1L1,TRIM25,UTP18,VEZF1,WFIKKN2,XYLT2"
TCGA.AG.3906.01A	17	48452532	55945471	353	0.5277	SMALL-GAIN	NONFOCAL	42	"ABCC3,ACSF2,AKAP1,ANKFN1,ANKRD40,C17orf112,C17orf67,CA10,CACNA1G,CCDC182,CHAD,COIL,COX11,CUEDC1,DGKE,EME1,EPN3,HLF,KIF2B,LRRC59,LUC7L3,MBTD1,MMD,MRPS23,MSI2,MYCBPAP,NME1,NME1-NME2,NME2,NOG,PCTP,RSAD1,SCPEP1,SPAG9,SPATA20,STXBP4,TMEM100,TOB1,TOM1L1,TRIM25,UTP18,WFIKKN2"
TCGA.AA.A00A.01A	17	48744883	56397379	296	0.486	SMALL-GAIN	NONFOCAL	43	"ABCC3,AKAP1,ANKFN1,ANKRD40,BZRAP1,C17orf112,C17orf67,CA10,CCDC182,COIL,COX11,CUEDC1,DGKE,DYNLL2,EPX,HLF,KIF2B,LPO,LUC7L3,MBTD1,MKS1,MMD,MPO,MRPS23,MSI2,NME1,NME1-NME2,NME2,NOG,OR4D1,OR4D2,PCTP,SCPEP1,SPAG9,SRSF1,STXBP4,TMEM100,TOB1,TOM1L1,TRIM25,UTP18,VEZF1,WFIKKN2"
TCGA.AA.A00Q.01A	17	48913252	56166451	219	0.3819	SMALL-GAIN	NONFOCAL	33	"AKAP1,ANKFN1,C17orf112,C17orf67,CA10,CCDC182,COIL,COX11,CUEDC1,DGKE,DYNLL2,HLF,KIF2B,MBTD1,MMD,MRPS23,MSI2,NME1,NME1-NME2,NME2,NOG,PCTP,SCPEP1,SPAG9,SRSF1,STXBP4,TMEM100,TOB1,TOM1L1,TRIM25,UTP18,VEZF1,WFIKKN2"
TCGA.AA.A00D.01A	17	48913252	61678406	732	0.4556	SMALL-GAIN	NONFOCAL	87	"ACE,AKAP1,ANKFN1,APPBP2,BCAS3,BRIP1,BZRAP1,C17orf112,C17orf47,C17orf64,C17orf67,C17orf82,CA10,CA4,CCDC182,CLTC,COIL,COX11,CUEDC1,CYB561,DCAF7,DGKE,DHX40,DYNLL2,EFCAB3,EPX,GDPD1,HEATR6,HLF,HSF5,INTS2,KCNH6,KIF2B,LPO,MARCH10,MBTD1,MED13,METTL2A,MKS1,MMD,MPO,MRC2,MRPS23,MSI2,MTMR4,NACA2,NME1,NME1-NME2,NME2,NOG,OR4D1,OR4D2,PCTP,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SCPEP1,SEPT4,SKA2,SMG8,SPAG9,SRSF1,STXBP4,SUPT4H1,TACO1,TANC2,TBX2,TBX4,TEX14,TLK2,TMEM100,TOB1,TOM1L1,TRIM25,TRIM37,TUBD1,USP32,UTP18,VEZF1,VMP1,WFIKKN2,YPEL2"
TCGA.AG.3581	17	49230468	55319533	2127	0.3812	SMALL-GAIN	NONFOCAL	23	"AKAP1,ANKFN1,C17orf112,C17orf67,CA10,COIL,COX11,DGKE,HLF,KIF2B,MBTD1,MMD,NME1,NME1-NME2,NME2,NOG,PCTP,SCPEP1,STXBP4,TMEM100,TOM1L1,TRIM25,UTP18"
TCGA.CM.6166	17	52726273	67522372	3840	0.4311	SMALL-GAIN	NONFOCAL	130	Too-Many
TCGA.AA.A01S	17	54164879	56195245	812	0.54285	SMALL-GAIN	NONFOCAL	15	"AKAP1,ANKFN1,C17orf67,CCDC182,COIL,CUEDC1,DGKE,DYNLL2,MRPS23,MSI2,NOG,SCPEP1,SRSF1,TRIM25,VEZF1"
TCGA.AY.A8YK	17	54205889	58912707	1126	0.4133	SMALL-GAIN	NONFOCAL	51	"AKAP1,ANKFN1,APPBP2,BCAS3,BZRAP1,C17orf47,C17orf64,C17orf67,CA4,CCDC182,CLTC,COIL,CUEDC1,DGKE,DHX40,DYNLL2,EPX,GDPD1,HEATR6,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SCPEP1,SEPT4,SKA2,SMG8,SRSF1,SUPT4H1,TEX14,TRIM25,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.DC.6682	17	54364685	59089544	1095	0.4518	SMALL-GAIN	NONFOCAL	51	"AKAP1,ANKFN1,APPBP2,BCAS3,BZRAP1,C17orf47,C17orf64,C17orf67,CA4,CCDC182,CLTC,COIL,CUEDC1,DGKE,DHX40,DYNLL2,EPX,GDPD1,HEATR6,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SCPEP1,SEPT4,SKA2,SMG8,SRSF1,SUPT4H1,TEX14,TRIM25,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.AA.3982	17	54584318	59600467	1135	0.4479	SMALL-GAIN	NONFOCAL	53	"AKAP1,APPBP2,BCAS3,BZRAP1,C17orf47,C17orf64,C17orf67,C17orf82,CA4,CCDC182,CLTC,COIL,CUEDC1,DGKE,DHX40,DYNLL2,EPX,GDPD1,HEATR6,HSF5,LPO,MKS1,MPO,MRPS23,MSI2,MTMR4,NOG,OR4D1,OR4D2,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SCPEP1,SEPT4,SKA2,SMG8,SRSF1,SUPT4H1,TBX2,TBX4,TEX14,TRIM25,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.AG.3581	17	55572304	65538501	2067	0.4003	SMALL-GAIN	NONFOCAL	99	"ACE,APOH,APPBP2,AXIN2,BCAS3,BRIP1,BZRAP1,C17orf47,C17orf64,C17orf82,CA4,CACNG1,CACNG4,CACNG5,CCDC182,CCDC47,CD79B,CEP112,CEP95,CLTC,CSH1,CSH2,CSHL1,CUEDC1,CYB561,DCAF7,DDX42,DDX5,DHX40,DYNLL2,EFCAB3,EPX,ERN1,FTSJ3,GDPD1,GH1,GH2,GNA13,HEATR6,HELZ,HSF5,ICAM2,INTS2,KCNH6,LIMD2,LPO,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MKS1,MPO,MRC2,MRPS23,MSI2,MTMR4,NACA2,OR4D1,OR4D2,PECAM1,PITPNC1,POLG2,PPM1D,PPM1E,PRKCA,PRR11,PRR29,PSMC5,PSMD12,PTRH2,RAD51C,RGS9,RNF43,RNFT1,RPS6KB1,SCN4A,SEPT4,SKA2,SMARCD2,SMG8,SMURF2,SRSF1,STRADA,SUPT4H1,TACO1,TANC2,TBX2,TBX4,TEX14,TEX2,TLK2,TRIM37,TUBD1,USP32,VEZF1,VMP1,YPEL2"
TCGA.AA.3975	17	56221127	76132691	5264	0.4739	SMALL-GAIN	NONFOCAL	210	Too-Many
TCGA.AA.A01S	17	56221127	81048658	6381	0.54515	SMALL-GAIN	NONFOCAL	308	Too-Many
TCGA.AF.2689	17	56358883	58340943	233	0.6658	SMALL-GAIN	NONFOCAL	26	"BZRAP1,C17orf47,CA4,CLTC,DHX40,GDPD1,HEATR6,HSF5,MTMR4,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RNFT1,RPS6KB1,SEPT4,SKA2,SMG8,SUPT4H1,TEX14,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.AA.A00A.01A	17	56408575	57970496	214	0.5378	SMALL-GAIN	NONFOCAL	21	"C17orf47,CLTC,DHX40,GDPD1,HSF5,MTMR4,PPM1E,PRR11,PTRH2,RAD51C,RNF43,RPS6KB1,SEPT4,SKA2,SMG8,SUPT4H1,TEX14,TRIM37,TUBD1,VMP1,YPEL2"
TCGA.AA.A00Q.01A	17	56536078	58143553	227	0.4626	SMALL-GAIN	NONFOCAL	21	"C17orf47,CLTC,DHX40,GDPD1,HEATR6,HSF5,MTMR4,PPM1E,PRR11,PTRH2,RAD51C,RNFT1,RPS6KB1,SEPT4,SKA2,SMG8,TEX14,TRIM37,TUBD1,VMP1,YPEL2"
TCGA.AA.A010.01A	17	56634293	57728517	131	0.4874	SMALL-GAIN	NONFOCAL	11	"CLTC,DHX40,GDPD1,PPM1E,PRR11,RAD51C,SKA2,SMG8,TEX14,TRIM37,YPEL2"
TCGA.AH.6643	17	56802140	64045039	1233	0.422	SMALL-GAIN	NONFOCAL	70	"ACE,APPBP2,AXIN2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,CCDC47,CD79B,CEP112,CEP95,CLTC,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,DHX40,EFCAB3,ERN1,FTSJ3,GDPD1,GH1,GH2,GNA13,HEATR6,ICAM2,INTS2,KCNH6,LIMD2,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,PECAM1,POLG2,PPM1D,PPM1E,PRR11,PRR29,PSMC5,PTRH2,RAD51C,RGS9,RNFT1,RPS6KB1,SCN4A,SKA2,SMARCD2,SMG8,SMURF2,STRADA,TACO1,TANC2,TBX2,TBX4,TEX2,TLK2,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.AG.3906.01A	17	57643002	61556328	370	0.387	SMALL-GAIN	NONFOCAL	29	"ACE,APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,CLTC,CYB561,DHX40,EFCAB3,HEATR6,INTS2,MARCH10,MED13,METTL2A,MRC2,NACA2,PPM1D,PTRH2,RNFT1,RPS6KB1,TANC2,TBX2,TBX4,TLK2,TUBD1,USP32,VMP1"
TCGA.4N.A93T	17	57859958	81048658	6164	0.4034	SMALL-GAIN	NONFOCAL	283	Too-Many
TCGA.AA.A00A.01A	17	58011478	60685380	150	0.5094	SMALL-GAIN	NONFOCAL	19	"APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,EFCAB3,HEATR6,INTS2,MED13,METTL2A,NACA2,PPM1D,RNFT1,RPS6KB1,TBX2,TBX4,TLK2,USP32"
TCGA.D5.6929	17	58322916	67469839	2107	0.5812	SMALL-GAIN	NONFOCAL	77	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ACE,AMZ2,APOH,APPBP2,ARSG,AXIN2,BCAS3,BPTF,BRIP1,C17orf58,C17orf64,C17orf82,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,INTS2,KCNH6,KPNA2,LIMD2,LRRC37A3,MAP2K6,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,NACA2,NOL11,PECAM1,PITPNC1,POLG2,PPM1D,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TBX2,TBX4,TEX2,TLK2,USP32,WIPI1"
TCGA.AF.2689	17	59155209	61198517	348	0.4204	SMALL-GAIN	NONFOCAL	14	"BCAS3,BRIP1,C17orf82,EFCAB3,INTS2,MARCH10,MED13,METTL2A,MRC2,NACA2,TANC2,TBX2,TBX4,TLK2"
TCGA.DC.6682	17	59855280	64866455	1112	0.4749	SMALL-GAIN	NONFOCAL	46	"ACE,APOH,AXIN2,BRIP1,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,EFCAB3,ERN1,FTSJ3,GH1,GH2,GNA13,ICAM2,INTS2,KCNH6,LIMD2,LRRC37A3,MAP3K3,MARCH10,MED13,METTL2A,MILR1,MRC2,PECAM1,POLG2,PRKCA,PRR29,PSMC5,RGS9,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TANC2,TEX2,TLK2"
TCGA.AA.3982	17	61518219	63326209	369	0.5045	SMALL-GAIN	NONFOCAL	33	"ACE,CCDC47,CD79B,CEP95,CSH1,CSH2,CSHL1,CYB561,DCAF7,DDX42,DDX5,ERN1,FTSJ3,GH1,GH2,GNA13,ICAM2,KCNH6,LIMD2,LRRC37A3,MAP3K3,MILR1,PECAM1,POLG2,PRR29,PSMC5,RGS9,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TEX2"
TCGA.AG.3906.01A	17	61824182	68171762	647	0.3857	SMALL-GAIN	NONFOCAL	53	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,DDX42,DDX5,ERN1,FAM20A,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,KCNJ16,KCNJ2,KPNA2,LRRC37A3,MAP2K6,MILR1,NOL11,PECAM1,PITPNC1,POLG2,PRKAR1A,PRKCA,PRR29,PSMC5,PSMD12,RGS9,SCN4A,SLC16A6,SMARCD2,SMURF2,TEX2,WIPI1"
TCGA.AA.3968	17	61858536	62080968	40	0.5697	SMALL-GAIN	NONFOCAL	13	"CD79B,CSH1,CSH2,CSHL1,DDX42,FTSJ3,GH1,GH2,ICAM2,PRR29,PSMC5,SCN4A,SMARCD2"
TCGA.AA.A00D.01A	17	61895006	64799939	168	0.3994	SMALL-GAIN	NONFOCAL	28	"APOH,AXIN2,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,DDX42,DDX5,ERN1,FTSJ3,GH1,GH2,GNA13,ICAM2,LRRC37A3,MILR1,PECAM1,POLG2,PRKCA,PRR29,PSMC5,RGS9,SCN4A,SMARCD2,SMURF2,TEX2"
TCGA.AG.4009.01A	17	61914763	62851926	136	0.481	SMALL-GAIN	NONFOCAL	19	"CD79B,CEP95,CSH1,CSH2,CSHL1,DDX5,ERN1,GH1,GH2,ICAM2,LRRC37A3,MILR1,PECAM1,POLG2,PRR29,SCN4A,SMARCD2,SMURF2,TEX2"
TCGA.AA.A010.01A	17	61949447	62499913	100	0.5747	SMALL-GAIN	NONFOCAL	15	"CD79B,CSH1,CSH2,CSHL1,DDX5,ERN1,GH1,GH2,ICAM2,MILR1,PECAM1,POLG2,PRR29,SCN4A,TEX2"
TCGA.AA.A00A.01A	17	62080065	64876622	127	0.5064	SMALL-GAIN	NONFOCAL	18	"APOH,AXIN2,CACNG5,CEP112,CEP95,DDX5,ERN1,GNA13,ICAM2,LRRC37A3,MILR1,PECAM1,POLG2,PRKCA,PRR29,RGS9,SMURF2,TEX2"
TCGA.AA.3968	17	63181940	66595837	1069	0.6574	SMALL-GAIN	NONFOCAL	21	"AMZ2,APOH,ARSG,AXIN2,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CEP112,FAM20A,HELZ,KPNA2,NOL11,PITPNC1,PRKAR1A,PRKCA,PSMD12,RGS9,SLC16A6,WIPI1"
TCGA.AA.A00N.01A	17	63631993	65971839	160	0.4143	SMALL-GAIN	NONFOCAL	11	"APOH,BPTF,CACNG1,CACNG4,CACNG5,CEP112,HELZ,NOL11,PITPNC1,PRKCA,PSMD12"
TCGA.A6.6652	17	63696135	81048658	5152	0.4337	SMALL-GAIN	NONFOCAL	225	Too-Many
TCGA.AA.3982	17	63990156	66808442	897	0.4525	SMALL-GAIN	NONFOCAL	19	"AMZ2,APOH,ARSG,BPTF,C17orf58,CACNG1,CACNG4,CACNG5,CEP112,FAM20A,HELZ,KPNA2,NOL11,PITPNC1,PRKAR1A,PRKCA,PSMD12,SLC16A6,WIPI1"
TCGA.AG.3575	17	64827300	81048658	4762	0.4073	SMALL-GAIN	NONFOCAL	222	Too-Many
TCGA.DC.6682	17	65322095	66659284	338	0.4311	SMALL-GAIN	NONFOCAL	12	"AMZ2,ARSG,BPTF,C17orf58,FAM20A,KPNA2,NOL11,PITPNC1,PRKAR1A,PSMD12,SLC16A6,WIPI1"
TCGA.AA.A00A.01A	17	65336917	73897756	733	0.4353	SMALL-GAIN	NONFOCAL	87	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARMC7,ARSG,ATP5H,BPTF,BTBD17,C17orf58,C17orf77,C17orf80,CASKIN2,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CDR2L,COG1,CPSF4L,DNAI2,FADS6,FAM104A,FAM20A,FDXR,GALK1,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,H3F3B,HID1,HN1,ICT1,ITGB4,KCNJ16,KCNJ2,KCTD2,KIAA0195,KIF19,KPNA2,LLGL2,LOC100134391,MAP2K6,MIF4GD,MRPL38,MRPS7,NAT9,NOL11,NT5C,NUP85,OTOP2,OTOP3,PITPNC1,PRKAR1A,PSMD12,RAB37,RECQL5,RPL38,SAP30BP,SDK2,SLC16A5,SLC16A6,SLC25A19,SLC39A11,SLC9A3R1,SMIM5,SMIM6,SOX9,SSTR2,SUMO2,TMEM104,TRIM47,TRIM65,TSEN54,TTYH2,UNC13D,UNK,USH1G,WBP2,WIPI1"
TCGA.AY.A8YK	17	65578872	67235704	474	0.4082	SMALL-GAIN	NONFOCAL	15	"ABCA10,ABCA6,ABCA8,ABCA9,AMZ2,ARSG,BPTF,C17orf58,FAM20A,KPNA2,NOL11,PITPNC1,PRKAR1A,SLC16A6,WIPI1"
TCGA.AG.3581	17	65607221	67634458	570	0.401	SMALL-GAIN	NONFOCAL	17	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,AMZ2,ARSG,BPTF,C17orf58,FAM20A,KPNA2,MAP2K6,NOL11,PITPNC1,PRKAR1A,SLC16A6,WIPI1"
TCGA.D5.6532	17	67562362	81048658	3962	0.4555	SMALL-GAIN	NONFOCAL	200	Too-Many
TCGA.DC.6682	17	69559864	77212053	2405	0.4507	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AA.3982	17	70043053	81048658	3021	0.5288	SMALL-GAIN	NONFOCAL	198	Too-Many
TCGA.AA.3850	17	70150580	81048658	2985	0.40265	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.AA.3812	17	70522663	81048658	2814	0.5097	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.AG.3605.01A	17	71080868	78215506	38	0.6673	SMALL-GAIN	NONFOCAL	128	Too-Many
TCGA.AA.3556	17	71206363	73444646	683	0.4229	SMALL-GAIN	NONFOCAL	46	"ARMC7,ATP5H,BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CDR2L,CPSF4L,DNAI2,FADS6,FAM104A,FDXR,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,HID1,HN1,ICT1,KCTD2,KIF19,LOC100134391,MIF4GD,MRPS7,NAT9,NT5C,NUP85,OTOP2,OTOP3,RAB37,RPL38,SDK2,SLC16A5,SLC25A19,SLC9A3R1,SUMO2,TMEM104,TTYH2,USH1G"
TCGA.AY.A8YK	17	71566956	78022244	1808	0.4217	SMALL-GAIN	NONFOCAL	116	Too-Many
TCGA.AZ.6607	17	72159821	81048658	2113	0.3928	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.AG.3906.01A	17	72233391	72733102	78	0.5181	SMALL-GAIN	NONFOCAL	14	"BTBD17,C17orf77,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,DNAI2,GPR142,GPRC5C,KIF19,RAB37,TTYH2"
TCGA.CM.6166	17	72995376	78217096	1380	0.3841	SMALL-GAIN	NONFOCAL	94	"AANAT,ACOX1,AFMID,ARMC7,ATP5H,BIRC5,C17orf99,C1QTNF1,CANT1,CARD14,CASKIN2,CBX2,CBX4,CBX8,CCDC40,CDK3,CDR2L,CEP295NL,CYGB,CYTH1,DNAH17,EIF4A3,ENGASE,ENPP7,EVPL,EXOC7,FBF1,FOXJ1,GAA,GALK1,GALR2,GGA3,GRB2,H3F3B,HN1,ICT1,ITGB4,JMJD6,KCTD2,KIAA0195,LGALS3BP,LLGL2,METTL23,MFSD11,MGAT5B,MIF4GD,MRPL38,MRPS7,MXRA7,NT5C,NUP85,PGS1,PRCD,PRPSAP1,QRICH2,RBFOX3,RECQL5,RHBDF2,RNF157,SAP30BP,SEC14L1,SEPT9,SGSH,SLC16A5,SLC25A19,SLC26A11,SMIM5,SMIM6,SOCS3,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SUMO2,SYNGR2,TBC1D16,TEN1,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,TRIM47,TRIM65,TSEN54,UBALD2,UBE2O,UNC13D,UNK,USP36,WBP2,ZACN"
TCGA.AA.A00D.01A	17	73214248	80037964	771	0.422	SMALL-GAIN	NONFOCAL	134	Too-Many
TCGA.AG.3906.01A	17	73917266	74563485	156	0.5138	SMALL-GAIN	NONFOCAL	21	"AANAT,ACOX1,CDK3,CYGB,EVPL,EXOC7,FBF1,FOXJ1,GALR2,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SPHK1,SRP68,ST6GALNAC2,TEN1,UBALD2,UBE2O,ZACN"
TCGA.AA.3556	17	73919537	81048658	1754	0.4311	SMALL-GAIN	NONFOCAL	131	Too-Many
TCGA.AA.A00A.01A	17	73974576	76171557	214	0.3808	SMALL-GAIN	NONFOCAL	35	"AANAT,ACOX1,C17orf99,CDK3,CYGB,EVPL,EXOC7,FOXJ1,GALR2,JMJD6,METTL23,MFSD11,MGAT5B,MXRA7,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SEC14L1,SEPT9,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SYNGR2,TEN1,TK1,TMC6,TMC8,TNRC6C,UBALD2,UBE2O,ZACN"
TCGA.AF.A56L	17	74037714	76654917	793	0.4805	SMALL-GAIN	NONFOCAL	37	"AANAT,AFMID,BIRC5,C17orf99,CYGB,DNAH17,EXOC7,FOXJ1,GALR2,JMJD6,METTL23,MFSD11,MGAT5B,MXRA7,PGS1,PRCD,PRPSAP1,QRICH2,RHBDF2,RNF157,SEC14L1,SEPT9,SOCS3,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SYNGR2,TK1,TMC6,TMC8,TMEM235,TNRC6C,UBALD2,UBE2O,ZACN"
TCGA.A6.2681	17	76217844	81048658	1094	0.4208	SMALL-GAIN	NONFOCAL	94	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,BIRC5,C17orf62,C17orf70,C17orf89,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CEP295NL,CHMP6,CSNK1D,CYTH1,DCXR,DNAH17,DUS1L,EIF4A3,ENDOV,ENGASE,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LGALS3BP,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PGS1,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,SOCS3,STRA13,TBC1D16,TBCD,TEX19,TIMP2,TMEM105,TMEM235,TSPAN10,USP36,UTS2R,WDR45B,ZNF750"
TCGA.AA.3975	17	76391453	81048658	1051	0.5082	SMALL-GAIN	NONFOCAL	91	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CEP295NL,CHMP6,CSNK1D,CYTH1,DCXR,DNAH17,DUS1L,EIF4A3,ENDOV,ENGASE,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LGALS3BP,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PGS1,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TIMP2,TMEM105,TSPAN10,USP36,UTS2R,WDR45B,ZNF750"
TCGA.AA.A00L.01A	17	76970723	78091357	46	0.4518	SMALL-GAIN	NONFOCAL	12	"C1QTNF1,CANT1,CBX2,CBX4,CBX8,CCDC40,ENGASE,ENPP7,GAA,LGALS3BP,RBFOX3,TBC1D16"
TCGA.AA.3695	17	77252526	81048658	785	0.3845	SMALL-GAIN	NONFOCAL	81	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RBFOX3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.DC.6682	17	77654710	81048658	662	0.4759	SMALL-GAIN	NONFOCAL	80	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CBX2,CBX4,CBX8,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENPP7,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.CA.6715	17	77852794	81048658	616	0.5423	SMALL-GAIN	NONFOCAL	76	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBC1D16,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AF.A56L	17	78484232	79923717	268	0.4789	SMALL-GAIN	NONFOCAL	37	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,BAHCC1,BAIAP2,C17orf70,C17orf89,CCDC137,CEP131,CHMP6,ENTHD2,FAM195B,FSCN2,GCGR,HGS,LOC100130370,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RPTOR,SIRT7,SLC25A10,SLC38A10,TMEM105,TSPAN10"
TCGA.DT.5265	17	78882839	79532108	97	0.4738	SMALL-GAIN	NONFOCAL	15	"AATK,ACTG1,BAHCC1,BAIAP2,C17orf70,C17orf89,CEP131,CHMP6,ENTHD2,FSCN2,LOC100130370,NPLOC4,RPTOR,SLC38A10,TMEM105"
TCGA.AM.5821	17	78935196	79532108	75	0.4338	SMALL-GAIN	NONFOCAL	15	"AATK,ACTG1,BAHCC1,BAIAP2,C17orf70,C17orf89,CEP131,CHMP6,ENTHD2,FSCN2,LOC100130370,NPLOC4,RPTOR,SLC38A10,TMEM105"
TCGA.AA.A01Z	17	79042974	80244066	127	0.517	SMALL-GAIN	NONFOCAL	47	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,BAHCC1,BAIAP2,C17orf70,C17orf89,CCDC137,CCDC57,CEP131,CSNK1D,DCXR,DUS1L,ENTHD2,FAM195B,FASN,FSCN2,GCGR,GPS1,HGS,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,RFNG,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TMEM105,TSPAN10"
TCGA.CM.6166	17	79076229	81048658	274	0.41	SMALL-GAIN	NONFOCAL	64	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CCDC137,CCDC57,CD7,CEP131,CSNK1D,DCXR,DUS1L,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AY.A8YK	17	79135156	80022360	77	0.4943	SMALL-GAIN	NONFOCAL	42	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,BAHCC1,C17orf70,C17orf89,CCDC137,CEP131,DCXR,DUS1L,ENTHD2,FAM195B,FSCN2,GCGR,GPS1,HGS,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,RFNG,SIRT7,SLC25A10,SLC38A10,STRA13,TMEM105,TSPAN10"
TCGA.AG.3906.01A	17	79936990	81051974	140	0.457	SMALL-GAIN	NONFOCAL	29	"ASPSCR1,B3GNTL1,C17orf62,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FASN,FN3K,FN3KRP,FOXK2,GPS1,HEXDC,LRRC45,METRNL,NARF,OGFOD3,RAB40B,RAC3,RFNG,SECTM1,SLC16A3,STRA13,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A00A.01A	17	80202612	81050855	81	0.4273	SMALL-GAIN	NONFOCAL	18	"B3GNTL1,C17orf62,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,SECTM1,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AF.6136	18	100948	7486105	2990	0.4099	SMALL-GAIN	NONFOCAL	28	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.CM.6675	18	100948	9217470	3762	0.5575	SMALL-GAIN	NONFOCAL	33	"ADCYAP1,ANKRD12,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NDC80,NDUFV2,PTPRM,RAB12,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.DM.A28K	18	100948	9661015	3885	0.4503	SMALL-GAIN	NONFOCAL	36	"ADCYAP1,ANKRD12,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NDC80,NDUFV2,PPP4R1,PTPRM,RAB12,RALBP1,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AG.A01Y	18	100948	14919307	5691	0.463	SMALL-GAIN	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.DM.A285	18	100948	15158340	5722	0.4783	SMALL-GAIN	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AG.3591	18	100948	15215870	5731	0.62	SMALL-GAIN	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.DM.A1DA	18	100948	30977254	9413	0.3815	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.AA.A022	18	100948	78015056	25969	0.452	SMALL-GAIN	NONFOCAL	267	Too-Many
TCGA.AZ.4684.01A	18	163296	2802437	149	0.432	SMALL-GAIN	NONFOCAL	13	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,METTL4,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.A00D.01A	18	163296	2890528	84	0.4246	SMALL-GAIN	NONFOCAL	14	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,METTL4,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.A00A.01A	18	163296	2934302	100	0.5496	SMALL-GAIN	NONFOCAL	15	"ADCYAP1,CETN1,CLUL1,COLEC12,EMILIN2,ENOSF1,LPIN2,METTL4,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.A00K.01A	18	163296	22642593	762	0.4009	SMALL-GAIN	NONFOCAL	88	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.CM.4746	18	303810	5926215	2259	0.4667	SMALL-GAIN	NONFOCAL	22	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,TMEM200C,TYMS,TYMSOS,YES1,ZBTB14"
TCGA.CM.4746	18	5935962	9988650	1778	0.4643	SMALL-GAIN	NONFOCAL	15	"ANKRD12,ARHGAP28,L3MBTL4,LAMA1,LRRC30,MTCL1,NDUFV2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.AA.A00A.01A	18	6213100	43246881	1047	0.5259	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.DM.A28K	18	9695768	35813990	6905	0.4512	SMALL-GAIN	NONFOCAL	95	"ABHD3,AFG3L2,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CEP192,CEP76,CHMP1B,CHST9,CIDEA,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FAM210A,FHOD3,GALNT1,GAREM,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,LDLRAD4,MAPRE2,MC2R,MC5R,MEP1B,MIB1,MOCOS,MPPE1,NAPG,NOL4,NPC1,OSBPL1A,PIEZO2,POTEC,PSMA8,PSMG2,PTPN2,RAB31,RBBP8,RIOK3,RNF125,RNF138,RNMT,ROCK1,RPRD1A,SEH1L,SLC25A52,SLC35G4,SLC39A6,SLMO1,SNRPD1,SPIRE1,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,TUBB6,TXNDC2,VAPA,ZNF24,ZNF396,ZNF397,ZNF519,ZNF521,ZSCAN30"
TCGA.DY.A1DF	18	11746707	12712111	244	0.5226	SMALL-GAIN	NONFOCAL	12	"AFG3L2,ANKRD62,CEP76,CHMP1B,CIDEA,GNAL,IMPA2,MPPE1,PSMG2,SLMO1,SPIRE1,TUBB6"
TCGA.AA.3655	18	12623051	15215870	609	0.5111	SMALL-GAIN	NONFOCAL	14	"ANKRD30B,CEP192,CEP76,FAM210A,LDLRAD4,MC2R,MC5R,POTEC,PSMG2,PTPN2,RNMT,SEH1L,SPIRE1,ZNF519"
TCGA.G4.6299	18	15215870	39795141	6341	0.5422	SMALL-GAIN	NONFOCAL	66	"ABHD3,ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FHOD3,GALNT1,GAREM,GATA6,GREB1L,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,PIK3C3,PSMA8,RBBP8,RIOK3,RNF125,RNF138,ROCK1,RPRD1A,SLC25A52,SLC39A6,SNRPD1,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.A00L.01A	18	18533489	21218776	170	0.6246	SMALL-GAIN	NONFOCAL	15	"ABHD3,ANKRD29,C18orf8,CABLES1,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,NPC1,RBBP8,RIOK3,ROCK1,SNRPD1,TMEM241"
TCGA.AG.3885	18	19234817	22911923	1127	0.4983	SMALL-GAIN	NONFOCAL	18	"ABHD3,ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,GATA6,HRH4,IMPACT,LAMA3,MIB1,NPC1,OSBPL1A,RBBP8,RIOK3,TMEM241,TTC39C,ZNF521"
TCGA.AA.3666	18	19685113	22911923	1042	0.5635	SMALL-GAIN	NONFOCAL	16	"ANKRD29,C18orf8,CABLES1,CABYR,CTAGE1,GATA6,HRH4,IMPACT,LAMA3,NPC1,OSBPL1A,RBBP8,RIOK3,TMEM241,TTC39C,ZNF521"
TCGA.AA.3850	18	20505940	22111514	456	0.42065	SMALL-GAIN	NONFOCAL	13	"ANKRD29,C18orf8,CABLES1,CABYR,HRH4,IMPACT,LAMA3,NPC1,OSBPL1A,RBBP8,RIOK3,TMEM241,TTC39C"
TCGA.AA.3664	18	20913597	37880745	5231	0.4014	SMALL-GAIN	NONFOCAL	55	"ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABYR,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RIOK3,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AF.3914.01A	18	21645949	24722606	106	0.4979	SMALL-GAIN	NONFOCAL	12	"AQP4,CABYR,CHST9,HRH4,IMPACT,KCTD1,OSBPL1A,PSMA8,SS18,TAF4B,TTC39C,ZNF521"
TCGA.AA.A00L.01A	18	23865827	34398799	368	0.4175	SMALL-GAIN	NONFOCAL	39	"AQP4,ASXL3,B4GALT6,C18orf21,CCDC178,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KCTD1,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TAF4B,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.G4.6299	18	40461142	44309780	1334	0.5231	SMALL-GAIN	NONFOCAL	14	"ATP5A1,C18orf25,EPG5,HAUS1,LOXHD1,PSTPIP2,RIT2,RNF165,SETBP1,SIGLEC15,SLC14A1,SLC14A2,ST8SIA5,SYT4"
TCGA.DM.A28K	18	41073029	47101039	2026	0.4438	SMALL-GAIN	NONFOCAL	30	"ATP5A1,C18orf25,C18orf32,CTIF,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,PIAS2,PSTPIP2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.DT.5265	18	42871567	45287656	882	0.4267	SMALL-GAIN	NONFOCAL	20	"ATP5A1,C18orf25,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PSTPIP2,RNF165,SIGLEC15,SKOR2,SLC14A1,SLC14A2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AA.A00A.01A	18	43795798	47093775	129	0.4527	SMALL-GAIN	NONFOCAL	22	"C18orf25,C18orf32,CTIF,DYM,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,PIAS2,RNF165,RPL17,RPL17-C18orf32,SKOR2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.A6.3808.01A	18	44579281	47116780	85	0.4545	SMALL-GAIN	NONFOCAL	13	"C18orf32,CTIF,DYM,HDHD2,IER3IP1,KATNAL2,LIPG,RPL17,RPL17-C18orf32,SKOR2,SMAD2,SMAD7,ZBTB7C"
TCGA.G4.6299	18	45682838	47938633	852	0.5018	SMALL-GAIN	NONFOCAL	13	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DYM,LIPG,MBD1,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD7"
TCGA.A6.3808.01A	18	47367688	55269559	257	0.5642	SMALL-GAIN	NONFOCAL	27	"BOD1L2,C18orf54,CCDC68,CFAP53,CXXC1,DCC,DYNAP,ELAC1,FECH,MAPK4,MBD1,MBD2,ME2,MEX3C,MRO,MYO5B,NARS,ONECUT2,POLI,RAB27B,SKA1,SMAD4,ST8SIA3,STARD6,TCF4,TXNL1,WDR7"
TCGA.AA.A00A.01A	18	47902148	67614523	489	0.5056	SMALL-GAIN	NONFOCAL	66	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CPLX4,DCC,DOK6,DSEL,DYNAP,ELAC1,FECH,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD2,MC4R,ME2,MEX3C,MRO,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,ST8SIA3,STARD6,TCF4,TMX3,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AA.A00L.01A	18	55398818	77895647	441	0.3978	SMALL-GAIN	NONFOCAL	73	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MBP,MC4R,NEDD4L,NETO1,NFATC1,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AY.6196	18	63912141	78015056	5482	0.4393	SMALL-GAIN	NONFOCAL	38	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.A00A.01A	18	67991893	72251669	57	0.473	SMALL-GAIN	NONFOCAL	11	"C18orf63,CBLN2,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,GTSCR1,NETO1,SOCS6,TIMM21"
TCGA.AA.A00A.01A	18	74692309	78005105	80	0.4031	SMALL-GAIN	NONFOCAL	13	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.CI.6621	18	74870971	78015056	1077	0.4844	SMALL-GAIN	NONFOCAL	12	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.D5.6922	18	75983986	78015056	548	0.6028	SMALL-GAIN	NONFOCAL	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AG.A00Y.01A	19	110628	20748422	3201	0.4511	SMALL-GAIN	NONFOCAL	567	Too-Many
TCGA.AA.3858	19	260969	2021908	171	0.6377	SMALL-GAIN	NONFOCAL	69	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,KLF16,LPPR3,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MUM1,NDUFS7,ODF3L2,ONECUT3,PALM,PCSK4,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SHC2,STK11,TCF3,THEG,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.CM.5860	19	260969	3554782	391	0.5016	SMALL-GAIN	NONFOCAL	111	Too-Many
TCGA.AA.3982	19	260969	9052235	1350	0.4341	SMALL-GAIN	NONFOCAL	252	Too-Many
TCGA.AA.3850	19	260969	15858719	2580	0.42325	SMALL-GAIN	NONFOCAL	445	Too-Many
TCGA.DC.4745	19	260969	20594100	3397	0.3872	SMALL-GAIN	NONFOCAL	565	Too-Many
TCGA.D5.5540	19	260969	24339719	4176	0.443	SMALL-GAIN	NONFOCAL	590	Too-Many
TCGA.A6.A56B	19	260969	27828663	4178	0.5544	SMALL-GAIN	NONFOCAL	590	Too-Many
TCGA.AA.3994	19	260969	28072810	4196	0.4276	SMALL-GAIN	NONFOCAL	590	Too-Many
TCGA.AZ.5407	19	260969	32672693	5821	0.4374	SMALL-GAIN	NONFOCAL	600	Too-Many
TCGA.AA.3818	19	260969	59095125	11563	0.4759	SMALL-GAIN	NONFOCAL	1372	Too-Many
TCGA.AA.A02O	19	260969	59095125	11537	0.475	SMALL-GAIN	NONFOCAL	1372	Too-Many
TCGA.AD.A5EK	19	260969	59095125	11490	0.4421	SMALL-GAIN	NONFOCAL	1372	Too-Many
TCGA.AA.A00Q.01A	19	281360	6457468	785	0.4943	SMALL-GAIN	NONFOCAL	187	Too-Many
TCGA.AG.3605.01A	19	709073	8548017	110	0.6534	SMALL-GAIN	NONFOCAL	226	Too-Many
TCGA.AA.A00K.01A	19	759859	19932321	2687	0.3882	SMALL-GAIN	NONFOCAL	542	Too-Many
TCGA.AG.3906.01A	19	1057883	1599401	49	0.6731	SMALL-GAIN	NONFOCAL	26	"ABCA7,ADAMTSL5,APC2,ATP5D,C19orf24,C19orf25,C19orf26,CIRBP,DAZAP1,EFNA2,GAMT,GPX4,HMHA1,MBD3,MEX3D,MIDN,MUM1,NDUFS7,PCSK4,PLK5,POLR2E,REEP6,RPS15,SBNO2,STK11,UQCR11"
TCGA.AA.A00D.01A	19	1422284	2790378	102	0.3805	SMALL-GAIN	NONFOCAL	44	"ABHD17A,ADAMTSL5,ADAT3,AMH,AP3D1,APC2,ATP8B3,BTBD2,C19orf25,C19orf35,CSNK1G2,DAZAP1,DIRAS1,DOT1L,GADD45B,GNG7,IZUMO4,JSRP1,KLF16,LINGO3,LMNB2,LSM7,MBD3,MEX3D,MKNK2,MOB3A,OAZ1,ONECUT3,PCSK4,PLEKHJ1,PLK5,REEP6,REXO1,RPS15,SCAMP4,SF3A2,SGTA,SLC39A3,SPPL2B,TCF3,THOP1,TIMM13,TMPRSS9,UQCR11"
TCGA.AA.3858	19	2094591	6957876	778	0.5473	SMALL-GAIN	NONFOCAL	129	Too-Many
TCGA.AA.A00D.01A	19	2939252	5649861	287	0.4348	SMALL-GAIN	NONFOCAL	65	"AES,ANKRD24,APBA3,ARRDC5,ATCAY,C19orf71,CACTIN,CCDC94,CELF5,CHAF1A,CREB3L3,DAPK3,DOHH,DPP9,DPP9-AS1,EBI3,EEF2,FEM1A,FSD1,FZR1,GIPC3,GNA11,GNA15,HDGFRP2,HMG20B,KDM4B,LRG1,MAP2K2,MATK,MFSD12,MPND,MRPL54,MYDGF,NCLN,NFIC,NMRK2,PIAS4,PIP5K1C,PLIN3,PLIN4,PLIN5,PTPRS,RAX2,S1PR4,SAFB,SAFB2,SEMA6B,SH3GL1,SHD,SIRT6,SMIM24,STAP2,TBXA2R,TICAM1,TJP3,TLE2,TLE6,TMIGD2,TNFAIP8L1,UBXN6,UHRF1,ZBTB7A,ZFR2,ZNF77,ZNRF4"
TCGA.CM.5860	19	3660618	59095125	11138	0.4764	SMALL-GAIN	NONFOCAL	1257	Too-Many
TCGA.AA.A00D.01A	19	5667332	8503244	423	0.3843	SMALL-GAIN	NONFOCAL	82	"ACER1,ACSBG2,ADGRE1,ALKBH7,ANGPTL4,ARHGEF18,C19orf45,C19orf70,C3,CAMSAP3,CAPS,CATSPERD,CCL25,CD209,CD320,CD70,CERS4,CLEC4G,CLEC4M,CLPP,CRB3,CTXN1,DENND1C,DUS3L,ELAVL1,EVI5L,FBN3,FCER2,FUT3,FUT5,FUT6,GPR108,GTF2F1,HSD11B1L,INSR,KANK3,KHSRP,LONP1,LRRC8E,MAP2K7,MARCH2,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCEMP1,MCOLN1,MLLT1,NDUFA11,NDUFA7,NRTN,PCP2,PET100,PEX11G,PNPLA6,PRR22,PRR36,PSPN,RAB11B,RANBP3,RETN,RFX2,RPL36,RPS28,SAFB,SH2D3A,SLC25A23,SLC25A41,SNAPC2,STXBP2,TGFBR3L,TIMM44,TNFSF14,TNFSF9,TRAPPC5,TRIP10,TUBB4A,VAV1,VMAC,XAB2,ZNF358,ZNF557"
TCGA.AA.A00Z.01A	19	5684789	40478001	225	0.4973	SMALL-GAIN	NONFOCAL	621	Too-Many
TCGA.AD.6901	19	5793703	7699346	421	0.3883	SMALL-GAIN	NONFOCAL	47	"ACER1,ACSBG2,ADGRE1,ALKBH7,ARHGEF18,C19orf45,C3,CAMSAP3,CAPS,CD70,CLPP,CRB3,DENND1C,FUT3,FUT5,FUT6,GPR108,GTF2F1,INSR,KHSRP,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCOLN1,MLLT1,NDUFA11,NRTN,PCP2,PET100,PEX11G,PNPLA6,PSPN,RANBP3,RFX2,SH2D3A,SLC25A23,SLC25A41,TNFSF14,TNFSF9,TRIP10,TUBB4A,VAV1,VMAC,XAB2,ZNF358,ZNF557"
TCGA.AA.A00Q.01A	19	6829750	8509841	277	0.427	SMALL-GAIN	NONFOCAL	46	"ADGRE1,ANGPTL4,ARHGEF18,C19orf45,CAMSAP3,CCL25,CD209,CD320,CERS4,CLEC4G,CLEC4M,CTXN1,ELAVL1,EVI5L,FBN3,FCER2,HNRNPM,INSR,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L2,MBD3L3,MBD3L4,MBD3L5,MCEMP1,MCOLN1,NDUFA7,PCP2,PET100,PEX11G,PNPLA6,PRR36,RAB11B,RETN,RPS28,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,VAV1,XAB2,ZNF358,ZNF557"
TCGA.AA.3858	19	6961181	20594675	2445	0.5417	SMALL-GAIN	NONFOCAL	366	Too-Many
TCGA.AA.3869	19	7762824	9768924	404	0.394	SMALL-GAIN	NONFOCAL	51	"ACTL9,ADAMTS10,ANGPTL4,CCL25,CD209,CD320,CERS4,CLEC4G,CLEC4M,CTXN1,ELAVL1,EVI5L,FBN3,FCER2,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L1,MUC16,MYO1F,NDUFA7,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,PRAM1,PRR36,RAB11B,RPS28,SNAPC2,TGFBR3L,TIMM44,ZNF121,ZNF177,ZNF266,ZNF317,ZNF414,ZNF426,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699"
TCGA.AA.A00L.01A	19	8550496	15218201	977	0.4144	SMALL-GAIN	NONFOCAL	188	Too-Many
TCGA.AG.4009.01A	19	8670473	9324523	116	0.5142	SMALL-GAIN	NONFOCAL	12	"ACTL9,ADAMTS10,MBD3L1,MUC16,OR1M1,OR2Z1,OR7D2,OR7G1,OR7G2,OR7G3,ZNF317,ZNF558"
TCGA.AA.A00A.01A	19	9203869	52725315	4621	0.3845	SMALL-GAIN	NONFOCAL	915	Too-Many
TCGA.AA.A00D.01A	19	9491826	11651854	405	0.4392	SMALL-GAIN	NONFOCAL	70	"ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,C19orf80,CARM1,CCDC151,CCDC159,CDC37,CDKN2D,CNN1,COL5A3,DNM2,DNMT1,DOCK6,ECSIT,EIF3G,ELAVL3,EPOR,FBXL12,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK2,KEAP1,KRI1,LDLR,LPPR2,MRPL4,OLFM2,P2RY11,PDE4A,PIN1,PPAN,PPAN-P2RY11,PRKCSH,QTRT1,RAB3D,RAVER1,RDH8,RGL3,S1PR2,S1PR5,SLC44A2,SMARCA4,SPC24,SWSAP1,TMED1,TMEM205,TSPAN16,TYK2,UBL5,YIPF2,ZGLP1,ZNF121,ZNF177,ZNF266,ZNF426,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF653,ZNF812,ZNF846"
TCGA.AG.3611.01A	19	9639055	11221290	322	0.5471	SMALL-GAIN	NONFOCAL	48	"ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,CARM1,CDC37,CDKN2D,COL5A3,DNM2,DNMT1,EIF3G,FBXL12,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KEAP1,KRI1,LDLR,MRPL4,OLFM2,P2RY11,PDE4A,PIN1,PPAN,PPAN-P2RY11,QTRT1,RAVER1,RDH8,S1PR2,S1PR5,SLC44A2,SMARCA4,TMED1,TYK2,UBL5,YIPF2,ZGLP1,ZNF121,ZNF426,ZNF561,ZNF562,ZNF812,ZNF846"
TCGA.AG.A014.01A	19	9720928	18096090	1451	0.4146	SMALL-GAIN	NONFOCAL	234	Too-Many
TCGA.AA.A00Q.01A	19	9938944	11687865	401	0.4126	SMALL-GAIN	NONFOCAL	61	"ACP5,ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,C19orf80,CARM1,CCDC151,CCDC159,CDC37,CDKN2D,CNN1,COL5A3,DNM2,DNMT1,DOCK6,ECSIT,EIF3G,ELAVL3,ELOF1,EPOR,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KANK2,KEAP1,KRI1,LDLR,LPPR2,MRPL4,OLFM2,P2RY11,PDE4A,PIN1,PPAN,PPAN-P2RY11,PRKCSH,QTRT1,RAB3D,RAVER1,RDH8,RGL3,S1PR2,S1PR5,SLC44A2,SMARCA4,SPC24,SWSAP1,TMED1,TMEM205,TSPAN16,TYK2,UBL5,YIPF2,ZGLP1,ZNF653"
TCGA.AA.3693	19	10178494	10666379	62	0.6676	SMALL-GAIN	NONFOCAL	23	"ANGPTL6,ATG4D,C19orf66,CDC37,DNMT1,EIF3G,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,KEAP1,KRI1,MRPL4,P2RY11,PDE4A,PPAN,PPAN-P2RY11,RAVER1,S1PR2,S1PR5,TYK2,ZGLP1"
TCGA.AG.3891.01A	19	10251732	13862528	670	0.4096	SMALL-GAIN	NONFOCAL	106	Too-Many
TCGA.AG.A00C.01A	19	11363115	12991559	278	0.4365	SMALL-GAIN	NONFOCAL	57	"ACP5,ASNA1,BEST2,C19orf43,CCDC151,CCDC159,CNN1,DHPS,DNASE2,DOCK6,ECSIT,ELAVL3,ELOF1,EPOR,FBXW9,HOOK2,JUNB,LPPR2,MAN2B1,MAST1,PRDX2,PRKCSH,RAB3D,RGL3,RNASEH2A,RTBDN,SWSAP1,TMEM205,TNPO2,TSPAN16,WDR83,WDR83OS,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF627,ZNF653,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.AA.A010.01A	19	11649673	12821417	160	0.4227	SMALL-GAIN	NONFOCAL	33	"ACP5,CNN1,DHPS,ELOF1,FBXW9,MAN2B1,TNPO2,WDR83,WDR83OS,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF627,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.AA.3712	19	12312202	12827922	69	0.588	SMALL-GAIN	NONFOCAL	15	"DHPS,FBXW9,MAN2B1,TNPO2,WDR83,WDR83OS,ZNF44,ZNF442,ZNF443,ZNF490,ZNF563,ZNF564,ZNF709,ZNF791,ZNF799"
TCGA.F4.6459	19	12484584	17058812	893	0.3921	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AA.A00D.01A	19	12774500	16771992	512	0.4171	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AG.3906.01A	19	12849303	13040985	74	0.4646	SMALL-GAIN	NONFOCAL	13	"ASNA1,BEST2,DNASE2,FARSA,GCDH,HOOK2,JUNB,KLF1,MAST1,PRDX2,RNASEH2A,RTBDN,SYCE2"
TCGA.A6.3807	19	13084625	14664932	220	0.6161	SMALL-GAIN	NONFOCAL	34	"ADGRE5,ADGRL1,ASF1B,C19orf53,C19orf57,C19orf67,CACNA1A,CC2D1A,CCDC130,DAND5,DCAF15,DDX39A,DNAJB1,GIPC1,IER2,IL27RA,LOC113230,LYL1,MRI1,NACC1,NANOS3,NFIX,PALM3,PKN1,PODNL1,PRKACA,PTGER1,RFX1,RLN3,SAMD1,STX10,TECR,TRMT1,ZSWIM4"
TCGA.AA.A01Q.01A	19	14673947	15218201	81	0.4237	SMALL-GAIN	NONFOCAL	16	"ADGRE2,ADGRE3,CASP14,CCDC105,CLEC17A,NDUFB7,OR1I1,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,SLC1A6,SYDE1,TECR,ZNF333"
TCGA.AA.A00L.01A	19	15338201	16437649	137	0.3824	SMALL-GAIN	NONFOCAL	26	"AKAP8,AKAP8L,AP1M1,BRD4,CIB3,CYP4F11,CYP4F12,CYP4F2,CYP4F22,CYP4F3,CYP4F8,EPHX3,FAM32A,HSH2D,KLF2,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,PGLYRP2,RAB8A,RASAL3,TPM4,WIZ"
TCGA.EI.6885	19	15514659	59095125	9064	0.3823	SMALL-GAIN	NONFOCAL	937	Too-Many
TCGA.AA.A01Q.01A	19	15726377	16178398	53	0.5169	SMALL-GAIN	NONFOCAL	12	"CYP4F11,CYP4F12,CYP4F2,CYP4F3,CYP4F8,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,TPM4"
TCGA.F4.6704	19	15764070	16282516	181	0.5925	SMALL-GAIN	NONFOCAL	14	"CIB3,CYP4F11,CYP4F12,CYP4F2,CYP4F3,HSH2D,LOC102724279,OR10H1,OR10H2,OR10H3,OR10H4,OR10H5,RAB8A,TPM4"
TCGA.AA.3850	19	15870203	21018556	879	0.40845	SMALL-GAIN	NONFOCAL	122	Too-Many
TCGA.AA.A00Q.01A	19	16008173	17888911	263	0.4293	SMALL-GAIN	NONFOCAL	47	"ABHD8,ANKLE1,ANO8,AP1M1,BABAM1,BST2,C19orf44,CALR3,CHERP,CIB3,COLGALT1,CPAMD8,CYP4F11,CYP4F2,DDA1,EPS15L1,F2RL3,FAM129C,FAM32A,FCHO1,GTPBP3,HAUS8,HSH2D,KLF2,MAP1S,MED26,MRPL34,MVB12A,MYO9B,NR2F6,NWD1,NXNL1,OCEL1,OR10H4,PGLS,PLVAP,RAB8A,SIN3B,SLC27A1,SLC35E1,SMIM7,TMEM221,TMEM38A,TPM4,UNC13A,USE1,USHBP1"
TCGA.AA.A00L.01A	19	16623804	34685346	872	0.4181	SMALL-GAIN	NONFOCAL	161	Too-Many
TCGA.AA.A00D.01A	19	16899743	34890398	819	0.4681	SMALL-GAIN	NONFOCAL	157	Too-Many
TCGA.AA.3952	19	17182016	17513748	56	0.4482	SMALL-GAIN	NONFOCAL	15	"ABHD8,ANKLE1,ANO8,BABAM1,BST2,DDA1,GTPBP3,HAUS8,MRPL34,MYO9B,NR2F6,OCEL1,PLVAP,USE1,USHBP1"
TCGA.AG.3605.01A	19	17301856	21511920	36	0.4954	SMALL-GAIN	NONFOCAL	101	Too-Many
TCGA.A6.3808.01A	19	17425075	17952230	162	0.3894	SMALL-GAIN	NONFOCAL	18	"ANO8,B3GNT3,BST2,COLGALT1,DDA1,FAM129C,FCHO1,GTPBP3,INSL3,JAK3,MAP1S,MVB12A,NXNL1,PGLS,PLVAP,SLC27A1,TMEM221,UNC13A"
TCGA.AG.3891.01A	19	17768834	18538522	162	0.4758	SMALL-GAIN	NONFOCAL	25	"ARRDC2,B3GNT3,CCDC124,FCHO1,GDF15,IFI30,IL12RB1,INSL3,JAK3,JUND,KCNN1,KIAA1683,LRRC25,LSM4,MAP1S,MAST3,MPV17L2,PDE4C,PGPEP1,PIK3R2,RAB3A,RPL18A,SLC5A5,SSBP4,UNC13A"
TCGA.AA.A00Q.01A	19	17937504	19905853	349	0.4034	SMALL-GAIN	NONFOCAL	63	"ARMC6,ARRDC2,ATP13A1,C19orf60,CCDC124,CERS1,CILP2,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,IFI30,IL12RB1,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,NCAN,NDUFA13,NR2C2AP,PBX4,PDE4C,PGPEP1,PIK3R2,RAB3A,RFXANK,RPL18A,SLC25A42,SLC5A5,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,TSSK6,UBA52,UPF1,YJEFN3,ZNF101,ZNF14,ZNF506"
TCGA.AG.3891.01A	19	18583567	19446864	170	0.4116	SMALL-GAIN	NONFOCAL	30	"ARMC6,C19orf60,CERS1,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FKBP8,GDF1,HAPLN4,HOMER3,KLHL26,KXD1,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,NCAN,NR2C2AP,RFXANK,SLC25A42,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM59L,UBA52,UPF1"
TCGA.AG.3906.01A	19	19014030	19381781	75	0.3878	SMALL-GAIN	NONFOCAL	15	"ARMC6,COPE,DDX49,HAPLN4,HOMER3,MEF2B,MEF2BNB,MEF2BNB-MEF2B,NCAN,NR2C2AP,RFXANK,SLC25A42,SUGP2,TM6SF2,TMEM161A"
TCGA.CK.5914.01A	19	19779676	21990971	119	0.5237	SMALL-GAIN	NONFOCAL	19	"ZNF100,ZNF101,ZNF14,ZNF253,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF493,ZNF506,ZNF626,ZNF682,ZNF708,ZNF714,ZNF737,ZNF85,ZNF90,ZNF93"
TCGA.AG.A025.01A	19	19822113	24310438	195	0.4088	SMALL-GAIN	NONFOCAL	32	"ZNF100,ZNF14,ZNF208,ZNF253,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF506,ZNF626,ZNF675,ZNF676,ZNF681,ZNF682,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF90,ZNF91,ZNF93,ZNF98,ZNF99"
TCGA.AA.3872	19	19898148	22083681	391	0.602	SMALL-GAIN	NONFOCAL	17	"ZNF100,ZNF253,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF493,ZNF506,ZNF626,ZNF682,ZNF708,ZNF714,ZNF737,ZNF85,ZNF90,ZNF93"
TCGA.AA.3858	19	20708066	27960005	796	0.497	SMALL-GAIN	NONFOCAL	25	"ZNF100,ZNF208,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF492,ZNF493,ZNF626,ZNF675,ZNF676,ZNF681,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF91,ZNF98,ZNF99"
TCGA.AA.3509.01A	19	21605682	23544578	62	0.6003	SMALL-GAIN	NONFOCAL	14	"ZNF100,ZNF208,ZNF257,ZNF429,ZNF43,ZNF492,ZNF493,ZNF676,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.AA.3872	19	22105265	27960005	515	0.5146	SMALL-GAIN	NONFOCAL	14	"ZNF208,ZNF254,ZNF257,ZNF492,ZNF675,ZNF676,ZNF681,ZNF726,ZNF728,ZNF729,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.F4.6459	19	23277694	59095125	7627	0.3839	SMALL-GAIN	NONFOCAL	788	Too-Many
TCGA.5M.AATE	19	27828663	59095125	7347	0.4347	SMALL-GAIN	NONFOCAL	782	Too-Many
TCGA.CM.4746	19	27960005	59095125	7335	0.4008	SMALL-GAIN	NONFOCAL	782	Too-Many
TCGA.A6.2686	19	28232667	59095125	7325	0.6401	SMALL-GAIN	NONFOCAL	782	Too-Many
TCGA.AG.A016.01A	19	29698418	33687562	168	0.4452	SMALL-GAIN	NONFOCAL	24	"ANKRD27,C19orf12,C19orf40,CCNE1,CEP89,DPY19L3,GPATCH1,LRP3,NUDT19,PDCD5,PLEKHF1,POP4,RGS9BP,RHPN2,SLC7A9,TDRD12,THEG5,TSHZ3,UQCRFS1,URI1,VSTM2B,WDR88,ZNF507,ZNF536"
TCGA.AA.3862.01A	19	30101279	33467310	136	0.3872	SMALL-GAIN	NONFOCAL	18	"ANKRD27,C19orf12,C19orf40,CCNE1,CEP89,DPY19L3,NUDT19,PDCD5,PLEKHF1,POP4,RGS9BP,SLC7A9,TDRD12,THEG5,TSHZ3,URI1,ZNF507,ZNF536"
TCGA.AY.A69D	19	30172283	59095125	6536	0.4563	SMALL-GAIN	NONFOCAL	778	Too-Many
TCGA.AA.3967.01A	19	30934442	36341836	508	0.5484	SMALL-GAIN	NONFOCAL	74	"ANKRD27,ARHGAP33,ATP4A,C19orf40,CD22,CEBPA,CEBPG,CEP89,CHST8,COX6B1,DMKN,DPY19L3,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GPATCH1,GPI,GRAMD1A,HAMP,HAUS5,HPN,HSPB6,IGFLR1,KCTD15,KIAA0355,KMT2B,KRTDAP,LGI4,LIN37,LRP3,LSM14A,LSR,MAG,NPHS1,NUDT19,PDCD2L,PDCD5,PEPD,PRODH2,PROSER3,PSENEN,RBM42,RGS9BP,RHPN2,SBSN,SCGB2B2,SCN1B,SLC7A10,SLC7A9,TDRD12,THEG5,TMEM147,TSHZ3,U2AF1L4,UBA2,UPK1A,USF2,WDR88,WTIP,ZBTB32,ZNF181,ZNF30,ZNF302,ZNF507,ZNF536,ZNF599,ZNF792"
TCGA.AA.3522	19	32433010	41090259	1812	0.6092	SMALL-GAIN	NONFOCAL	199	Too-Many
TCGA.AZ.5407	19	32682474	43556842	2063	0.4447	SMALL-GAIN	NONFOCAL	261	Too-Many
TCGA.AG.A00Y.01A	19	32899112	59082320	4227	0.386	SMALL-GAIN	NONFOCAL	771	Too-Many
TCGA.AU.3779	19	34407746	41434046	1291	0.5811	SMALL-GAIN	NONFOCAL	190	Too-Many
TCGA.AA.3841	19	34808388	36591430	389	0.4238	SMALL-GAIN	NONFOCAL	63	"ALKBH6,APLP1,ARHGAP33,ATP4A,CD22,CLIP3,COX6B1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GPI,GRAMD1A,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KIAA0355,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LRFN3,LSR,MAG,NFKBID,NPHS1,PDCD2L,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SCGB2B2,SCN1B,SDHAF1,SYNE4,THAP8,TMEM147,TYROBP,U2AF1L4,UBA2,UPK1A,USF2,WDR62,WTIP,ZBTB32,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AY.6196	19	34872381	40498010	1029	0.477	SMALL-GAIN	NONFOCAL	161	Too-Many
TCGA.A6.5659	19	35344257	59095125	4664	0.512	SMALL-GAIN	NONFOCAL	742	Too-Many
TCGA.A6.3808.01A	19	35451731	36166690	180	0.5462	SMALL-GAIN	NONFOCAL	29	"ATP4A,CD22,COX6B1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,GRAMD1A,HAMP,HAUS5,HPN,KRTDAP,LGI4,LSR,MAG,RBM42,SBSN,SCN1B,TMEM147,UPK1A,USF2,ZNF792"
TCGA.AA.A00D.01A	19	35523383	37618013	332	0.3824	SMALL-GAIN	NONFOCAL	73	"ALKBH6,APLP1,ARHGAP33,ATP4A,CAPNS1,CD22,CLIP3,COX6B1,COX7A1,DMKN,ETV2,FAM187B,FFAR1,FFAR2,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GAPDHS,HAMP,HAUS5,HCST,HPN,HSPB6,IGFLR1,KIRREL2,KMT2B,KRTDAP,LGI4,LIN37,LOC101927572,LOC728485,LRFN3,LSR,MAG,NFKBID,NPHS1,OVOL3,POLR2I,PRODH2,PROSER3,PSENEN,RBM42,SBSN,SCN1B,SDHAF1,SYNE4,TBCB,THAP8,TMEM147,TYROBP,U2AF1L4,UPK1A,USF2,WDR62,ZBTB32,ZFP14,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF420,ZNF461,ZNF529,ZNF565,ZNF566,ZNF567,ZNF568,ZNF790,ZNF829,ZNF850"
TCGA.AG.A016.01A	19	36049225	36499434	140	0.3991	SMALL-GAIN	NONFOCAL	25	"APLP1,ARHGAP33,ATP4A,COX6B1,ETV2,HAUS5,HCST,HSPB6,IGFLR1,KIRREL2,KMT2B,LIN37,LRFN3,NFKBID,NPHS1,PRODH2,PROSER3,PSENEN,RBM42,SDHAF1,SYNE4,TYROBP,U2AF1L4,UPK1A,ZBTB32"
TCGA.AA.3967.01A	19	36504189	39330728	422	0.5232	SMALL-GAIN	NONFOCAL	65	"ACTN4,ALKBH6,C19orf33,CAPN12,CAPNS1,CATSPERG,CLIP3,COX7A1,DPF1,ECH1,EIF3K,FAM98C,GGN,HKR1,HNRNPL,KCNK6,LGALS4,LGALS7,LGALS7B,LOC101927572,LOC728485,MAP4K1,OVOL3,POLR2I,PPP1R14A,PSMD8,RASGRP4,RYR1,SIPA1L3,SPINT2,SPRED3,TBCB,THAP8,WDR62,WDR87,YIF1B,ZFP14,ZFP30,ZFP82,ZNF146,ZNF260,ZNF345,ZNF382,ZNF383,ZNF420,ZNF461,ZNF527,ZNF529,ZNF540,ZNF565,ZNF566,ZNF567,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829,ZNF850"
TCGA.AA.3841	19	36621642	47170643	1829	0.4011	SMALL-GAIN	NONFOCAL	284	Too-Many
TCGA.AA.A00L.01A	19	36673387	49334870	1883	0.4038	SMALL-GAIN	NONFOCAL	344	Too-Many
TCGA.AA.A010.01A	19	37129505	37697880	40	0.5751	SMALL-GAIN	NONFOCAL	11	"LOC728485,ZNF345,ZNF420,ZNF461,ZNF567,ZNF568,ZNF585A,ZNF585B,ZNF790,ZNF829,ZNF850"
TCGA.AG.A01Y	19	37263967	39593831	387	0.4156	SMALL-GAIN	NONFOCAL	53	"ACTN4,C19orf33,CAPN12,CATSPERG,CCER2,DPF1,ECH1,EIF3K,FAM98C,FBXO17,FBXO27,GGN,HKR1,HNRNPL,KCNK6,LGALS4,LGALS7,LGALS7B,LOC728485,MAP4K1,MRPS12,NFKBIB,PAPL,PPP1R14A,PSMD8,RASGRP4,RINL,RYR1,SARS2,SIPA1L3,SIRT2,SPINT2,SPRED3,WDR87,YIF1B,ZFP30,ZNF345,ZNF383,ZNF420,ZNF527,ZNF540,ZNF568,ZNF569,ZNF570,ZNF571,ZNF573,ZNF585A,ZNF585B,ZNF607,ZNF781,ZNF790,ZNF793,ZNF829"
TCGA.AA.A00D.01A	19	37721264	44531123	1044	0.386	SMALL-GAIN	NONFOCAL	182	Too-Many
TCGA.AA.A010.01A	19	37852960	38262133	45	0.567	SMALL-GAIN	NONFOCAL	11	"HKR1,ZFP30,ZNF527,ZNF540,ZNF569,ZNF570,ZNF571,ZNF573,ZNF607,ZNF781,ZNF793"
TCGA.AA.3851	19	38673297	44484992	999	0.6189	SMALL-GAIN	NONFOCAL	166	Too-Many
TCGA.A6.3808.01A	19	39228854	40336839	222	0.5119	SMALL-GAIN	NONFOCAL	43	"CAPN12,CCER2,CLC,DLL3,DYRK1B,ECH1,EID2,EID2B,FBL,FBXO17,FBXO27,GMFG,HNRNPL,IFNL1,IFNL2,IFNL3,IFNL4,LEUTX,LGALS13,LGALS14,LGALS16,LGALS4,LGALS7,LGALS7B,LRFN1,MED29,MRPS12,NCCRP1,NFKBIB,PAF1,PAK4,PAPL,PLEKHG2,RINL,RPS16,SAMD4B,SARS2,SELV,SIRT2,SUPT5H,SYCN,TIMM50,ZFP36"
TCGA.AA.A010.01A	19	39384412	39735029	54	0.4288	SMALL-GAIN	NONFOCAL	12	"CCER2,FBXO17,FBXO27,IFNL3,MRPS12,NCCRP1,NFKBIB,PAK4,PAPL,SARS2,SIRT2,SYCN"
TCGA.AA.3967.01A	19	39663550	45800902	1050	0.4894	SMALL-GAIN	NONFOCAL	175	Too-Many
TCGA.A6.3808.01A	19	40411607	52785323	2546	0.3787	SMALL-GAIN	NONFOCAL	387	Too-Many
TCGA.AA.A010.01A	19	41903034	42354319	64	0.5969	SMALL-GAIN	NONFOCAL	13	"ATP5SL,B3GNT8,BCKDHA,CEACAM21,CEACAM3,CEACAM4,CEACAM5,CEACAM6,CEACAM7,DMRTC2,ERICH4,EXOSC5,LYPD4"
TCGA.AG.3909.01A	19	42937882	43910577	81	0.3963	SMALL-GAIN	NONFOCAL	15	"CD177,CEACAM1,CEACAM8,CXCL17,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TEX101"
TCGA.EI.6506	19	43804761	44214739	104	0.5678	SMALL-GAIN	NONFOCAL	14	"CADM4,CD177,ETHE1,IRGQ,LYPD3,PHLDB3,PINLYP,PLAUR,SRRM5,TEX101,XRCC1,ZNF428,ZNF575,ZNF576"
TCGA.AZ.5407	19	43856631	59095125	3623	0.4482	SMALL-GAIN	NONFOCAL	507	Too-Many
TCGA.AA.A00Q.01A	19	44015541	44251602	52	0.4478	SMALL-GAIN	NONFOCAL	12	"CADM4,ETHE1,IRGC,IRGQ,PINLYP,PLAUR,SMG9,SRRM5,XRCC1,ZNF428,ZNF575,ZNF576"
TCGA.AA.A00J.01A	19	44015541	47217072	487	0.405	SMALL-GAIN	NONFOCAL	103	Too-Many
TCGA.AG.3906.01A	19	44065014	44301711	45	0.3981	SMALL-GAIN	NONFOCAL	12	"CADM4,IRGC,IRGQ,KCNN4,LYPD5,PINLYP,PLAUR,SMG9,SRRM5,XRCC1,ZNF428,ZNF576"
TCGA.AA.A00N.01A	19	44302620	44932440	79	0.5973	SMALL-GAIN	NONFOCAL	20	"LYPD5,ZNF112,ZNF155,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF404,ZNF45"
TCGA.AG.3891.01A	19	45150467	46332211	277	0.4422	SMALL-GAIN	NONFOCAL	45	"APOC1,APOC2,APOC4,APOE,BCAM,BCL3,BLOC1S3,CBLC,CD3EAP,CEACAM16,CEACAM19,CKM,CLASRP,CLPTM1,DMPK,DMWD,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FOSB,GEMIN7,GIPR,GPR4,KLC3,MARK4,NKPD1,OPA3,PPM1N,PPP1R13L,PPP1R37,PVR,PVRL2,QPCTL,RELB,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,TOMM40,TRAPPC6A,VASP,ZNF296"
TCGA.AA.3967.01A	19	45818746	50285741	942	0.5634	SMALL-GAIN	NONFOCAL	156	Too-Many
TCGA.AA.A00J.01A	19	47240019	47885220	61	0.4494	SMALL-GAIN	NONFOCAL	15	"AP2S1,ARHGAP35,BBC3,C5AR1,C5AR2,CCDC9,DHX34,FKRP,INAFM1,NPAS1,SAE1,SLC1A5,STRN4,TMEM160,ZC3H4"
TCGA.AG.3891.01A	19	49260155	49558598	105	0.3967	SMALL-GAIN	NONFOCAL	19	"BAX,BCAT2,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,DHDH,FGF21,FTL,GYS1,HSD17B14,LHB,NUCB1,PLEKHA4,PPP1R15A,RUVBL2,TULP2"
TCGA.AA.A00L.01A	19	49401008	49684555	95	0.4645	SMALL-GAIN	NONFOCAL	22	"BAX,C19orf73,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,DHDH,FTL,GYS1,HRC,KCNA7,LHB,LIN7B,NTF4,NUCB1,PPFIA3,RUVBL2,SNRNP70,TRPM4,TULP2"
TCGA.AG.4009.01A	19	50390681	51010823	133	0.4511	SMALL-GAIN	NONFOCAL	18	"ATF5,EMC10,FAM71E1,IL4I1,IZUMO2,JOSD2,KCNC3,MYBPC2,MYH14,NAPSA,NR1H2,NUP62,POLD1,SIGLEC11,SPIB,TBC1D17,VRK3,ZNF473"
TCGA.AA.A010.01A	19	51227638	51537763	71	0.6334	SMALL-GAIN	NONFOCAL	17	"ACPT,C19orf48,CLEC11A,GPR32,KLK1,KLK10,KLK11,KLK12,KLK15,KLK2,KLK3,KLK4,KLK5,KLK6,KLK7,KLK8,KLK9"
TCGA.AG.4009.01A	19	51499294	51771737	58	0.5631	SMALL-GAIN	NONFOCAL	12	"CD33,CTU1,KLK10,KLK11,KLK12,KLK13,KLK14,KLK8,KLK9,SIGLEC7,SIGLEC9,SIGLECL1"
TCGA.AA.A00L.01A	19	52249147	52817359	68	0.4325	SMALL-GAIN	NONFOCAL	16	"FPR1,FPR2,FPR3,PPP2R1A,ZNF350,ZNF432,ZNF480,ZNF577,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF766,ZNF836,ZNF841"
TCGA.AG.3891.01A	19	52785002	53754695	83	0.4356	SMALL-GAIN	NONFOCAL	24	"ERVV-1,ERVV-2,ZNF160,ZNF28,ZNF320,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF766,ZNF808,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF880"
TCGA.AA.A010.01A	19	53432172	54376765	116	0.4828	SMALL-GAIN	NONFOCAL	20	"BIRC8,DPRX,ERVV-1,ERVV-2,MYADM,NLRP12,VN1R2,VN1R4,ZNF160,ZNF331,ZNF347,ZNF415,ZNF665,ZNF677,ZNF761,ZNF765,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF845"
TCGA.AA.A00Q.01A	19	54304442	55593124	280	0.5031	SMALL-GAIN	NONFOCAL	49	"CACNG6,CACNG7,CACNG8,CDC42EP5,CNOT3,EPS8L1,FCAR,GP6,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR1,LAIR2,LENG1,LENG8,LENG9,LILRA1,LILRA2,LILRA3,LILRA4,LILRA5,LILRA6,LILRB1,LILRB2,LILRB3,LILRB4,LILRB5,MBOAT7,MYADM,NCR1,NDUFA3,NLRP12,NLRP2,NLRP7,OSCAR,PRKCG,PRPF31,RDH13,RPS9,TARM1,TFPT,TMC4,TSEN34,TTYH1,VSTM1"
TCGA.A6.2678	19	54497700	59095125	1215	0.396	SMALL-GAIN	NONFOCAL	167	Too-Many
TCGA.AA.A00L.01A	19	54544175	54947239	134	0.4681	SMALL-GAIN	NONFOCAL	21	"CNOT3,LAIR1,LENG1,LILRA3,LILRA4,LILRA5,LILRA6,LILRB2,LILRB3,LILRB5,MBOAT7,NDUFA3,OSCAR,PRPF31,RPS9,TARM1,TFPT,TMC4,TSEN34,TTYH1,VSTM1"
TCGA.AG.A025.01A	19	54973293	55317399	67	0.4446	SMALL-GAIN	NONFOCAL	11	"CDC42EP5,KIR2DL1,KIR2DL3,KIR2DL4,KIR3DL3,LAIR2,LENG9,LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.CK.5914.01A	19	55009369	55385664	81	0.6616	SMALL-GAIN	NONFOCAL	13	"FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR2,LILRA1,LILRA2,LILRB1,LILRB4"
TCGA.AA.A00L.01A	19	55014846	55512087	88	0.5077	SMALL-GAIN	NONFOCAL	16	"FCAR,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,LAIR2,LILRA1,LILRA2,LILRB1,LILRB4,NCR1,NLRP2,NLRP7"
TCGA.AA.A010.01A	19	55246668	55559991	72	0.5638	SMALL-GAIN	NONFOCAL	13	"FCAR,GP6,KIR2DL1,KIR2DL3,KIR2DL4,KIR2DS4,KIR3DL1,KIR3DL2,KIR3DL3,NCR1,NLRP2,NLRP7,RDH13"
TCGA.AG.A016.01A	19	55385664	56206061	166	0.486	SMALL-GAIN	NONFOCAL	43	"BRSK1,CCDC106,COX6B2,DNAAF3,EPN1,EPS8L1,FAM71E2,FCAR,FIZ1,GP6,HSPBP1,IL11,ISOC2,NAT14,NCR1,NLRP2,NLRP7,PPP1R12C,PPP6R1,PTPRH,RDH13,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,SYT5,TMEM150B,TMEM190,TMEM238,TMEM86B,TNNI3,TNNT1,U2AF2,UBE2S,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.AA.3967.01A	19	55525753	59082320	543	0.4256	SMALL-GAIN	NONFOCAL	126	Too-Many
TCGA.AA.A00Q.01A	19	55702816	59082320	402	0.5559	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AG.3891.01A	19	55790747	55997757	42	0.5566	SMALL-GAIN	NONFOCAL	15	"BRSK1,COX6B2,FAM71E2,HSPBP1,IL11,ISOC2,NAT14,RPL28,SHISA7,SUV420H2,TMEM150B,TMEM190,TMEM238,UBE2S,ZNF628"
TCGA.AA.A00L.01A	19	56189872	58491002	243	0.5282	SMALL-GAIN	NONFOCAL	64	"AURKC,C19orf18,DUXA,EPN1,GALP,NLRP11,NLRP13,NLRP4,NLRP5,NLRP8,NLRP9,PEG3,RFPL4A,RFPL4AL1,SMIM17,USP29,VN1R1,ZFP28,ZIK1,ZIM2,ZIM3,ZNF134,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF304,ZNF416,ZNF417,ZNF418,ZNF419,ZNF444,ZNF460,ZNF470,ZNF471,ZNF530,ZNF543,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF582,ZNF583,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF667,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF787,ZNF805,ZNF814,ZNF835,ZSCAN4,ZSCAN5A,ZSCAN5B"
TCGA.A6.3808.01A	19	56543947	57922666	126	0.6292	SMALL-GAIN	NONFOCAL	29	"AURKC,DUXA,GALP,NLRP5,PEG3,SMIM17,USP29,ZFP28,ZIM2,ZIM3,ZNF17,ZNF264,ZNF304,ZNF444,ZNF460,ZNF470,ZNF471,ZNF543,ZNF547,ZNF548,ZNF582,ZNF583,ZNF667,ZNF71,ZNF787,ZNF805,ZNF835,ZSCAN5A,ZSCAN5B"
TCGA.AA.A00D.01A	19	57132996	59082320	216	0.4982	SMALL-GAIN	NONFOCAL	68	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,PEG3,RNF225,RPS5,SLC27A5,SMIM17,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM2,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF71,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF835,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AG.A036.01A	20	16303	34610857	2256	0.399	SMALL-GAIN	NONFOCAL	261	Too-Many
TCGA.AA.A00L.01A	20	68282	1558976	119	0.6644	SMALL-GAIN	NONFOCAL	32	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB1,SIRPB2,SIRPD,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AG.A016.01A	20	68282	29628179	1271	0.3809	SMALL-GAIN	NONFOCAL	177	Too-Many
TCGA.AA.A00A.01A	20	68282	62904524	3530	0.4398	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.A02J.01A	20	68282	62904524	3475	0.6545	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AG.A00H.01A	20	68282	62904524	3713	0.5069	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AG.A02X.01A	20	68282	62904524	3787	0.4347	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CM.6165.01A	20	68282	62904524	4558	0.4163	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.DM.A1DB	20	69407	1747566	762	0.4605	SMALL-GAIN	NONFOCAL	33	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.G4.6314	20	69407	1994111	878	0.4599	SMALL-GAIN	NONFOCAL	35	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.A6.5656	20	69407	3075628	1326	0.4811	SMALL-GAIN	NONFOCAL	55	"ANGPT4,AVP,C20orf141,C20orf202,C20orf96,CPXM1,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FKBP1A,GNRH2,IDH3B,LOC388780,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,VPS16,ZCCHC3,ZNF343"
TCGA.EI.6506	20	69407	3691519	1503	0.498	SMALL-GAIN	NONFOCAL	66	"ADAM33,ANGPT4,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf96,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.A6.2683	20	69407	3827308	1538	0.5299	SMALL-GAIN	NONFOCAL	72	"ADAM33,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3989	20	69407	4534869	1881	0.5335	SMALL-GAIN	NONFOCAL	77	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3530	20	69407	5378664	2246	0.6482	SMALL-GAIN	NONFOCAL	85	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3844	20	69407	5378664	2249	0.5636	SMALL-GAIN	NONFOCAL	85	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AD.6899	20	69407	5381489	2252	0.4503	SMALL-GAIN	NONFOCAL	85	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AY.A69D	20	69407	6411202	2683	0.465	SMALL-GAIN	NONFOCAL	93	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.A6.2677	20	69407	9548736	3778	0.4329	SMALL-GAIN	NONFOCAL	100	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LAMP5,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PAK7,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AA.3872	20	69407	11466783	4996	0.4896	SMALL-GAIN	NONFOCAL	105	Too-Many
TCGA.AG.3728	20	69407	12629593	5451	0.6348	SMALL-GAIN	NONFOCAL	106	Too-Many
TCGA.G4.6626	20	69407	14000827	5983	0.6542	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.EI.6508	20	69407	14125727	5999	0.3968	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.AA.3971	20	69407	14236784	6024	0.6101	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.F5.6465	20	69407	14478214	6083	0.6165	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.DM.A28F	20	69407	14493799	6079	0.608	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3866	20	69407	14580081	6121	0.6141	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.F4.6459	20	69407	14580081	6126	0.3983	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AG.3599	20	69407	14618547	6134	0.6055	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.DM.A1DA	20	69407	14662720	6149	0.4333	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.DM.A1D8	20	69407	14690184	6157	0.5525	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AF.5654	20	69407	14705887	6152	0.4333	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.A02Y	20	69407	14718195	6161	0.4721	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AG.3592	20	69407	14728971	6174	0.5584	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.A01T	20	69407	14745197	6169	0.5203	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.DM.A28H	20	69407	14758110	6168	0.4035	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.A6.2681	20	69407	14758472	6173	0.4683	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3488	20	69407	14762970	6177	0.5942	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.CM.4752	20	69407	14762970	6177	0.5269	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AH.6897	20	69407	14818196	6193	0.5355	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3666	20	69407	14823471	6202	0.4138	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3984	20	69407	14823471	6192	0.4434	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.A6.6137	20	69407	14830595	6204	0.4168	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3956	20	69407	14837327	6201	0.5922	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.G5.6233	20	69407	14837964	6205	0.4375	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AG.3894	20	69407	14877885	6191	0.4473	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AF.2690	20	69407	14891786	6224	0.4866	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3858	20	69407	14894919	6228	0.6161	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.QG.A5YV	20	69407	14917185	6203	0.5212	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.CI.6619	20	69407	14945838	6243	0.4337	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AZ.6607	20	69407	15101479	6310	0.4584	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.A02O	20	69407	15125971	6339	0.4863	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3667	20	69407	16832094	7344	0.5023	SMALL-GAIN	NONFOCAL	117	Too-Many
TCGA.F5.6863	20	69407	20381301	8994	0.4108	SMALL-GAIN	NONFOCAL	142	Too-Many
TCGA.AA.3842	20	69407	21261511	9284	0.4387	SMALL-GAIN	NONFOCAL	143	Too-Many
TCGA.AG.3890	20	69407	21570836	9298	0.5709	SMALL-GAIN	NONFOCAL	146	Too-Many
TCGA.AG.3612	20	69407	26192654	10904	0.5428	SMALL-GAIN	NONFOCAL	177	Too-Many
TCGA.CK.5912	20	69407	29586146	10955	0.506	SMALL-GAIN	NONFOCAL	177	Too-Many
TCGA.AA.3679	20	69407	30441981	11087	0.3977	SMALL-GAIN	NONFOCAL	192	Too-Many
TCGA.CI.6623	20	69407	34048160	11814	0.4545	SMALL-GAIN	NONFOCAL	250	Too-Many
TCGA.AZ.4681	20	69407	38252131	12831	0.4663	SMALL-GAIN	NONFOCAL	298	Too-Many
TCGA.AA.3696	20	69407	41187458	14004	0.4646	SMALL-GAIN	NONFOCAL	306	Too-Many
TCGA.D5.5537	20	69407	41531585	14200	0.4893	SMALL-GAIN	NONFOCAL	306	Too-Many
TCGA.AZ.6598	20	69407	50644474	17414	0.489	SMALL-GAIN	NONFOCAL	416	Too-Many
TCGA.AA.3979	20	69407	52643154	18108	0.5585	SMALL-GAIN	NONFOCAL	420	Too-Many
TCGA.AF.3911	20	69407	52643154	18174	0.6278	SMALL-GAIN	NONFOCAL	420	Too-Many
TCGA.AH.6644	20	69407	52643154	18149	0.6056	SMALL-GAIN	NONFOCAL	420	Too-Many
TCGA.G5.6235	20	69407	52807220	18291	0.3885	SMALL-GAIN	NONFOCAL	421	Too-Many
TCGA.AA.3534	20	69407	61420062	22146	0.4516	SMALL-GAIN	NONFOCAL	481	Too-Many
TCGA.A6.2680	20	69407	62912462	22412	0.486	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.A6.A567	20	69407	62912462	22293	0.4577	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3514	20	69407	62912462	22430	0.4437	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3532	20	69407	62912462	22428	0.4982	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3544	20	69407	62912462	22446	0.4605	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3549	20	69407	62912462	22450	0.5612	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3556	20	69407	62912462	22382	0.4352	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3558	20	69407	62912462	22439	0.5463	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3675	20	69407	62912462	22446	0.4361	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3692	20	69407	62912462	22441	0.4332	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AF.2687	20	69407	62912462	22394	0.5884	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AG.3580	20	69407	62912462	22443	0.3996	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AG.3598	20	69407	62912462	22366	0.5797	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AG.3887	20	69407	62912462	22357	0.4127	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CI.6622	20	69407	62912462	22408	0.6777	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CK.5915	20	69407	62912462	22408	0.5952	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CL.4957	20	69407	62912462	22449	0.5908	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CM.4747	20	69407	62912462	22427	0.5057	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CM.5341	20	69407	62912462	22421	0.4737	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CM.5862	20	69407	62912462	22390	0.6141	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CM.6161	20	69407	62912462	22397	0.4947	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.CM.6163	20	69407	62912462	22359	0.3898	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.EI.6509	20	69407	62912462	22438	0.4671	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.EI.6510	20	69407	62912462	22402	0.4312	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.F5.6464	20	69407	62912462	22440	0.486	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.F5.6810	20	69407	62912462	22415	0.629	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.F5.6812	20	69407	62912462	22397	0.5399	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.QG.A5YX	20	69407	62912462	22260	0.4535	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AA.3695	20	121975	61709004	22219	0.5178	SMALL-GAIN	NONFOCAL	489	Too-Many
TCGA.AA.3818	20	134475	14781683	6176	0.4555	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.AA.3673	20	137932	62912462	22437	0.587	SMALL-GAIN	NONFOCAL	525	Too-Many
TCGA.AA.3811	20	213522	6221205	2535	0.4691	SMALL-GAIN	NONFOCAL	88	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.AG.4009.01A	20	399961	2690168	178	0.4684	SMALL-GAIN	NONFOCAL	34	"ANGPT4,C20orf202,CSNK2A1,EBF4,FAM110A,FKBP1A,IDH3B,LOC388780,NOP56,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM74B,ZNF343"
TCGA.AG.3909.01A	20	409103	1460306	80	0.5422	SMALL-GAIN	NONFOCAL	19	"ANGPT4,C20orf202,CSNK2A1,FAM110A,FKBP1A,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB2,SLC52A3,SNPH,SRXN1,TBC1D20,TCF15,TMEM74B"
TCGA.AA.3685	20	1721449	3469331	693	0.4336	SMALL-GAIN	NONFOCAL	30	"ATRN,AVP,C20orf141,C20orf194,CPXM1,DDRGK1,EBF4,FASTKD5,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,OXT,PCED1A,PDYN,PTPRA,SIRPA,SLC4A11,SNRPB,STK35,TGM3,TGM6,TMC2,TMEM239,UBOX5,VPS16,ZNF343"
TCGA.G4.6314	20	2000809	7604341	2362	0.4885	SMALL-GAIN	NONFOCAL	59	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf27,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,DDRGK1,EBF4,FASTKD5,FERMT1,GFRA4,GNRH2,GPCPD1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,OXT,PANK2,PCED1A,PCNA,PRND,PRNP,PROKR2,PTPRA,RASSF2,RNF24,SIGLEC1,SLC23A2,SLC4A11,SMOX,SNRPB,SPEF1,STK35,TGM3,TGM6,TMC2,TMEM230,TMEM239,TRMT6,UBOX5,VPS16,ZNF343"
TCGA.AA.A00Z.01A	20	2640645	33315076	33	0.629	SMALL-GAIN	NONFOCAL	194	Too-Many
TCGA.DM.A1HA	20	2767619	3885916	295	0.496	SMALL-GAIN	NONFOCAL	29	"ADAM33,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf27,CDC25B,CENPB,CPXM1,DDRGK1,FASTKD5,GFRA4,GNRH2,HSPA12B,ITPA,LZTS3,MAVS,MRPS26,OXT,PANK2,PCED1A,PTPRA,SIGLEC1,SLC4A11,SPEF1,TMEM239,UBOX5,VPS16"
TCGA.AG.3891.01A	20	2967373	3361979	91	0.6767	SMALL-GAIN	NONFOCAL	12	"AVP,C20orf194,DDRGK1,FASTKD5,GNRH2,ITPA,LZTS3,MRPS26,OXT,PTPRA,SLC4A11,UBOX5"
TCGA.EI.6506	20	3701131	62912462	20893	0.4866	SMALL-GAIN	NONFOCAL	461	Too-Many
TCGA.AY.4071	20	3799652	9418550	2497	0.666	SMALL-GAIN	NONFOCAL	27	"ADRA1D,AP5S1,BMP2,C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,HAO1,LRRN4,MAVS,MCM8,PANK2,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,RNF24,SLC23A2,SMOX,TMEM230,TMX4,TRMT6"
TCGA.AG.A00C.01A	20	3838235	5967880	127	0.4109	SMALL-GAIN	NONFOCAL	18	"ADRA1D,C20orf196,CDS2,CHGB,GPCPD1,MAVS,MCM8,PANK2,PCNA,PRND,PRNP,PROKR2,RASSF2,RNF24,SLC23A2,SMOX,TMEM230,TRMT6"
TCGA.A6.2683	20	3845859	14583256	4574	0.5108	SMALL-GAIN	NONFOCAL	42	"ADRA1D,ANKEF1,BMP2,BTBD3,C20orf196,CDS2,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MAVS,MCM8,MKKS,NDUFAF5,PAK7,PANK2,PCNA,PLCB1,PLCB4,PRND,PRNP,PROKR2,RASSF2,RNF24,SEL1L2,SLC23A2,SLX4IP,SMOX,SNAP25,SPTLC3,TASP1,TMEM230,TMX4,TRMT6"
TCGA.4N.A93T	20	4297966	62912462	20706	0.4352	SMALL-GAIN	NONFOCAL	450	Too-Many
TCGA.AA.3989	20	4541424	62912462	20552	0.4848	SMALL-GAIN	NONFOCAL	450	Too-Many
TCGA.AA.3530	20	5381426	62912462	20151	0.5692	SMALL-GAIN	NONFOCAL	442	Too-Many
TCGA.AD.6899	20	5403113	14914708	3962	0.4771	SMALL-GAIN	NONFOCAL	29	"ANKEF1,BMP2,BTBD3,C20orf196,CHGB,CRLS1,ESF1,FERMT1,FLRT3,GPCPD1,HAO1,ISM1,JAG1,LAMP5,LRRN4,MACROD2,MCM8,MKKS,NDUFAF5,PAK7,PLCB1,PLCB4,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1,TMX4,TRMT6"
TCGA.AG.3584	20	5718008	9650339	1769	0.5448	SMALL-GAIN	NONFOCAL	14	"BMP2,C20orf196,CHGB,CRLS1,FERMT1,HAO1,LAMP5,LRRN4,MCM8,PAK7,PLCB1,PLCB4,TMX4,TRMT6"
TCGA.AA.A02W.01A	20	5927000	62904524	3196	0.6769	SMALL-GAIN	NONFOCAL	439	Too-Many
TCGA.G4.6314	20	7614373	14831624	2960	0.4814	SMALL-GAIN	NONFOCAL	20	"ANKEF1,BTBD3,ESF1,FLRT3,HAO1,ISM1,JAG1,LAMP5,MACROD2,MKKS,NDUFAF5,PAK7,PLCB1,PLCB4,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1,TMX4"
TCGA.AA.A004.01A	20	8130903	62904524	2957	0.651	SMALL-GAIN	NONFOCAL	431	Too-Many
TCGA.AY.A69D	20	8851320	14646698	2341	0.4919	SMALL-GAIN	NONFOCAL	18	"ANKEF1,BTBD3,ESF1,FLRT3,ISM1,JAG1,LAMP5,MACROD2,MKKS,NDUFAF5,PAK7,PLCB1,PLCB4,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1"
TCGA.AY.4070	20	9331673	21533933	5305	0.5303	SMALL-GAIN	NONFOCAL	49	"ANKEF1,BANF2,BFSP1,BTBD3,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,ESF1,FLRT3,INSM1,ISM1,JAG1,KIF16B,KIZ,LAMP5,MACROD2,MGME1,MKKS,NAA20,NDUFAF5,NKX2-2,NKX2-4,OTOR,OVOL2,PAK7,PCSK2,PET117,PLCB4,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,TASP1,XRN2,ZNF133"
TCGA.AG.3909.01A	20	9382100	13714316	122	0.6447	SMALL-GAIN	NONFOCAL	13	"ANKEF1,BTBD3,ESF1,ISM1,JAG1,LAMP5,MKKS,PAK7,PLCB4,SLX4IP,SNAP25,SPTLC3,TASP1"
TCGA.AA.3666	20	14862234	32607921	5390	0.4132	SMALL-GAIN	NONFOCAL	115	Too-Many
TCGA.AA.3488	20	14921538	62912462	16187	0.6017	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AG.3894	20	14940686	62912462	16146	0.4269	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AA.A02Y	20	15014096	49044204	10566	0.4651	SMALL-GAIN	NONFOCAL	292	Too-Many
TCGA.DM.A1DA	20	15015185	23568053	3898	0.4447	SMALL-GAIN	NONFOCAL	45	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST11,CST8,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.DM.A1D8	20	15015440	62912462	16144	0.5057	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AF.2690	20	15037033	62912462	16170	0.672	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AY.A69D	20	15053066	62912462	16124	0.4557	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.CI.6619	20	15078342	62912462	16116	0.4334	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AA.3872	20	15086441	60778207	15709	0.5442	SMALL-GAIN	NONFOCAL	357	Too-Many
TCGA.AA.3818	20	15086861	62912462	16130	0.4555	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.A6.6137	20	15095267	62912462	16127	0.3979	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AG.3731	20	15101463	62912462	16124	0.4225	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.G5.6233	20	15102826	62912462	16123	0.539	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AA.A01T	20	15111137	32248280	5191	0.5104	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AF.5654	20	15122604	62912462	16046	0.428	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.CM.5868	20	15154705	18759080	1789	0.5275	SMALL-GAIN	NONFOCAL	20	"BANF2,BFSP1,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SEC23B,SNRPB2,SNX5,ZNF133"
TCGA.G4.6314	20	15154705	62912462	16086	0.4712	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AG.3599	20	15161164	62912462	16069	0.6066	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AA.3984	20	15193073	31945363	5112	0.414	SMALL-GAIN	NONFOCAL	104	Too-Many
TCGA.AG.4008	20	15219032	62912462	15965	0.6752	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.CM.4752	20	15230950	19285510	1982	0.5205	SMALL-GAIN	NONFOCAL	23	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.A6.2675	20	15239468	25120597	4378	0.5905	SMALL-GAIN	NONFOCAL	57	"ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133"
TCGA.F4.6459	20	15239468	26095587	4564	0.4447	SMALL-GAIN	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AG.3728	20	15276093	62912462	16051	0.6462	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AG.3896	20	15276093	62912462	16003	0.5508	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AZ.6607	20	15276093	62912462	16006	0.4639	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AU.3779	20	15281332	19507730	2132	0.456	SMALL-GAIN	NONFOCAL	23	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.AD.6899	20	15281332	62912462	15980	0.4461	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AG.3726	20	15331006	32675726	5197	0.3958	SMALL-GAIN	NONFOCAL	115	Too-Many
TCGA.5M.AAT4	20	15386827	51739072	11375	0.4628	SMALL-GAIN	NONFOCAL	305	Too-Many
TCGA.A6.2683	20	15405433	62912462	15971	0.5133	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AA.3956	20	15415911	53995728	12340	0.6709	SMALL-GAIN	NONFOCAL	310	Too-Many
TCGA.CA.6716	20	15419703	26225144	4496	0.456	SMALL-GAIN	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.D5.6926	20	15451178	62912462	15935	0.6641	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.D5.6536	20	15523294	25433820	4354	0.3991	SMALL-GAIN	NONFOCAL	62	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133"
TCGA.DM.A28H	20	15638104	60275288	15232	0.3848	SMALL-GAIN	NONFOCAL	352	Too-Many
TCGA.AA.A02O	20	15691239	62912462	15786	0.4738	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.A6.2681	20	15729313	62912462	15770	0.5595	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AG.3592	20	15739859	25366064	4201	0.5804	SMALL-GAIN	NONFOCAL	60	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133"
TCGA.A6.3807	20	15897754	52639283	11375	0.4842	SMALL-GAIN	NONFOCAL	307	Too-Many
TCGA.AA.3866	20	15968989	62912462	15624	0.6491	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AY.4071	20	15970766	19127415	1508	0.6711	SMALL-GAIN	NONFOCAL	22	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SNRPB2,SNX5,ZNF133"
TCGA.AH.6897	20	16176896	62912462	15468	0.5286	SMALL-GAIN	NONFOCAL	413	Too-Many
TCGA.F5.6813	20	16213313	62912462	15449	0.5806	SMALL-GAIN	NONFOCAL	413	Too-Many
TCGA.F5.6465	20	16670633	62912462	15196	0.587	SMALL-GAIN	NONFOCAL	412	Too-Many
TCGA.5M.AAT5	20	16783687	62912462	15122	0.641	SMALL-GAIN	NONFOCAL	410	Too-Many
TCGA.A6.2677	20	16859715	62912462	14105	0.4324	SMALL-GAIN	NONFOCAL	410	Too-Many
TCGA.AA.3496	20	17160774	20792254	1592	0.4478	SMALL-GAIN	NONFOCAL	25	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,MGME1,NAA20,OVOL2,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,ZNF133"
TCGA.DM.A1HA	20	17202563	22142649	1972	0.5264	SMALL-GAIN	NONFOCAL	30	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIZ,MGME1,NAA20,NKX2-2,NKX2-4,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,XRN2,ZNF133"
TCGA.A6.4105	20	17239696	21815191	1877	0.6028	SMALL-GAIN	NONFOCAL	30	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIZ,MGME1,NAA20,NKX2-2,NKX2-4,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,XRN2,ZNF133"
TCGA.G4.6625	20	17380885	30578466	3508	0.536	SMALL-GAIN	NONFOCAL	79	"ABHD12,ACSS1,APMAP,BANF2,BCL2L1,BFSP1,C20orf78,CD93,CFAP61,COX4I2,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DSTN,DTD1,DUSP15,DZANK1,ENTPD6,FOXA2,FOXS1,GGTLC1,GINS1,GZF1,HM13,ID1,INSM1,KIZ,MGME1,MYLK2,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PCSK2,PDRG1,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,REM1,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,SYNDIG1,THBD,TPX2,TTLL9,VSX1,XKR7,XRN2,ZNF133,ZNF337"
TCGA.AA.3982	20	17384585	20896941	1548	0.6718	SMALL-GAIN	NONFOCAL	25	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,MGME1,NAA20,OVOL2,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,ZNF133"
TCGA.AA.3844	20	17384585	23192537	2379	0.5277	SMALL-GAIN	NONFOCAL	34	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,FOXA2,INSM1,KIZ,MGME1,NAA20,NKX2-2,NKX2-4,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.D5.5541	20	17556099	24247239	2778	0.5256	SMALL-GAIN	NONFOCAL	46	"BANF2,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIZ,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.AD.6965	20	18007845	19882140	854	0.4112	SMALL-GAIN	NONFOCAL	13	"C20orf78,CSRP2BP,DTD1,DZANK1,OVOL2,PET117,POLR3F,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3,ZNF133"
TCGA.AG.3882	20	18113485	19634746	679	0.5939	SMALL-GAIN	NONFOCAL	11	"C20orf78,CSRP2BP,DTD1,DZANK1,PET117,POLR3F,RBBP9,SCP2D1,SEC23B,SLC24A3,ZNF133"
TCGA.AA.A02F.01A	20	18162304	32371499	660	0.6749	SMALL-GAIN	NONFOCAL	100	"ABHD12,ACSS1,ACTL10,APMAP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,C20orf78,CBFA2T2,CCM2L,CD93,CDK5RAP1,CFAP61,COMMD7,COX4I2,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DTD1,DUSP15,DZANK1,E2F1,ENTPD6,FOXA2,FOXS1,GGTLC1,GINS1,GZF1,HCK,HM13,ID1,INSM1,KIF3B,KIZ,MAPRE1,MYLK2,NAA20,NANP,NAPB,NECAB3,NINL,NKX2-2,NKX2-4,NOL4L,NXT1,PAX1,PDRG1,PLAGL2,POFUT1,POLR3F,PXMP4,PYGB,RALGAPA2,RBBP9,REM1,RIN2,SCP2D1,SEC23B,SLC24A3,SNTA1,SSTR4,SUN5,SYNDIG1,THBD,TM9SF4,TPX2,TTLL9,VSX1,XKR7,XRN2,ZNF133,ZNF337,ZNF341"
TCGA.DM.A1D0	20	18548443	62912462	14258	0.3848	SMALL-GAIN	NONFOCAL	395	Too-Many
TCGA.DM.A0XD	20	18625053	62912462	14310	0.4068	SMALL-GAIN	NONFOCAL	395	Too-Many
TCGA.A6.6654	20	19004101	21875727	1165	0.4839	SMALL-GAIN	NONFOCAL	12	"CFAP61,CRNKL1,INSM1,KIZ,NAA20,NKX2-2,NKX2-4,PAX1,RALGAPA2,RIN2,SLC24A3,XRN2"
TCGA.G4.6315	20	19030785	33645648	3476	0.6262	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AG.3742	20	19553791	24219613	1888	0.658	SMALL-GAIN	NONFOCAL	30	"CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,FOXA2,GGTLC1,GZF1,INSM1,KIZ,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,RALGAPA2,RIN2,SLC24A3,SSTR4,THBD,XRN2"
TCGA.A6.5660	20	19685867	22037408	839	0.4014	SMALL-GAIN	NONFOCAL	12	"CFAP61,CRNKL1,INSM1,KIZ,NAA20,NKX2-2,NKX2-4,PAX1,RALGAPA2,RIN2,SLC24A3,XRN2"
TCGA.AD.6965	20	20014954	25844992	2104	0.4081	SMALL-GAIN	NONFOCAL	39	"ABHD12,ACSS1,APMAP,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF337"
TCGA.QG.A5YV	20	20014954	37198857	3654	0.4813	SMALL-GAIN	NONFOCAL	153	Too-Many
TCGA.F5.6863	20	20664673	26289924	1907	0.5057	SMALL-GAIN	NONFOCAL	36	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,KIZ,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF337"
TCGA.A6.6138	20	20817608	62912462	13329	0.6376	SMALL-GAIN	NONFOCAL	385	Too-Many
TCGA.AA.3982	20	20906063	23569160	1014	0.58	SMALL-GAIN	NONFOCAL	16	"CD93,CST11,CST8,CST9L,CSTL1,FOXA2,GZF1,KIZ,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,SSTR4,THBD,XRN2"
TCGA.DY.A1DC	20	21011235	62912462	13201	0.656	SMALL-GAIN	NONFOCAL	385	Too-Many
TCGA.AA.3496	20	21570836	24831134	1364	0.4698	SMALL-GAIN	NONFOCAL	20	"CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,FOXA2,GGTLC1,GZF1,NAPB,NXT1,PAX1,SSTR4,SYNDIG1,THBD"
TCGA.F5.6702	20	21602962	62912462	13040	0.5413	SMALL-GAIN	NONFOCAL	381	Too-Many
TCGA.QG.A5Z1	20	22142649	25254687	1364	0.4363	SMALL-GAIN	NONFOCAL	25	"ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GZF1,NAPB,NXT1,PYGB,SSTR4,SYNDIG1,THBD,VSX1"
TCGA.AG.3883	20	22296078	30082778	1490	0.6204	SMALL-GAIN	NONFOCAL	38	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,NANP,NAPB,NINL,NXT1,PYGB,REM1,SSTR4,SYNDIG1,THBD,VSX1,ZNF337"
TCGA.AG.3890	20	22296078	60605847	12392	0.5857	SMALL-GAIN	NONFOCAL	319	Too-Many
TCGA.DM.A1HA	20	22632930	49898103	7432	0.5235	SMALL-GAIN	NONFOCAL	265	Too-Many
TCGA.CM.6679	20	22802646	26266312	1165	0.40975	SMALL-GAIN	NONFOCAL	29	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,GGTLC1,GINS1,GZF1,NANP,NAPB,NINL,NXT1,PYGB,SSTR4,SYNDIG1,THBD,VSX1,ZNF337"
TCGA.EI.6514	20	23082402	25142611	908	0.644	SMALL-GAIN	NONFOCAL	19	"ACSS1,APMAP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,GGTLC1,GZF1,NAPB,NXT1,SYNDIG1,VSX1"
TCGA.AA.A01S	20	23122080	23926032	364	0.51435	SMALL-GAIN	NONFOCAL	13	"CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,GZF1,NAPB,NXT1"
TCGA.AA.3844	20	23197612	24555529	610	0.4476	SMALL-GAIN	NONFOCAL	15	"CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,GGTLC1,GZF1,NAPB,NXT1,SYNDIG1"
TCGA.AY.4070	20	23358508	62912462	12302	0.6049	SMALL-GAIN	NONFOCAL	374	Too-Many
TCGA.AG.4009.01A	20	23360011	25004050	64	0.5508	SMALL-GAIN	NONFOCAL	16	"ACSS1,APMAP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,GGTLC1,NAPB,SYNDIG1"
TCGA.AG.A01Y	20	23564263	45068391	5222	0.4165	SMALL-GAIN	NONFOCAL	220	Too-Many
TCGA.DM.A1DA	20	23576753	31630723	1173	0.3975	SMALL-GAIN	NONFOCAL	53	"ABHD12,ACSS1,APMAP,ASXL1,BCL2L1,BPIFB2,BPIFB6,C20orf203,CCM2L,COMMD7,COX4I2,CST1,CST2,CST3,CST4,CST5,CST7,CST9,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,ENTPD6,FOXS1,GGTLC1,GINS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NANP,NINL,NOL4L,PDRG1,PLAGL2,POFUT1,PYGB,REM1,SUN5,SYNDIG1,TM9SF4,TPX2,TTLL9,VSX1,XKR7,ZNF337"
TCGA.AZ.5403	20	23836123	51832775	7591	0.5783	SMALL-GAIN	NONFOCAL	255	Too-Many
TCGA.AG.3902	20	23933184	62912462	12112	0.4858	SMALL-GAIN	NONFOCAL	363	Too-Many
TCGA.AY.6196	20	24177092	62912462	11856	0.4074	SMALL-GAIN	NONFOCAL	362	Too-Many
TCGA.A6.5660	20	24247239	26253681	504	0.6299	SMALL-GAIN	NONFOCAL	12	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1,ZNF337"
TCGA.AF.2689	20	24604299	30680224	517	0.667	SMALL-GAIN	NONFOCAL	33	"ABHD12,ACSS1,APMAP,BCL2L1,CCM2L,COX4I2,CST7,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,ENTPD6,FOXS1,GINS1,HCK,HM13,ID1,MYLK2,NANP,NINL,PDRG1,PYGB,REM1,SYNDIG1,TPX2,TTLL9,VSX1,XKR7,ZNF337"
TCGA.CM.6164	20	24650748	25897543	308	0.6592	SMALL-GAIN	NONFOCAL	11	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NANP,NINL,PYGB,VSX1,ZNF337"
TCGA.QL.A97D	20	24673696	37702398	1994	0.3948	SMALL-GAIN	NONFOCAL	132	Too-Many
TCGA.AA.A02K.01A	20	25003530	39751799	1305	0.4433	SMALL-GAIN	NONFOCAL	132	Too-Many
TCGA.AG.A00C.01A	20	25228778	31424389	265	0.5247	SMALL-GAIN	NONFOCAL	37	"ABHD12,ASXL1,BCL2L1,C20orf203,CCM2L,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,FOXS1,GINS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NANP,NINL,NOL4L,PDRG1,PLAGL2,POFUT1,PYGB,REM1,TM9SF4,TPX2,TTLL9,XKR7,ZNF337"
TCGA.AU.3779	20	25270338	62912462	11576	0.5251	SMALL-GAIN	NONFOCAL	356	Too-Many
TCGA.AG.A01J.01A	20	25655631	62904524	2420	0.5727	SMALL-GAIN	NONFOCAL	351	Too-Many
TCGA.G4.6320	20	25990001	62912462	11490	0.3998	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.A01Z	20	26072581	62912462	11477	0.4788	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.DM.A1D4	20	26072581	62912462	11490	0.4581	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.AG.3583	20	26113568	50445820	6177	0.4094	SMALL-GAIN	NONFOCAL	239	Too-Many
TCGA.AM.5820	20	26232227	31590744	345	0.4698	SMALL-GAIN	NONFOCAL	32	"ASXL1,BCL2L1,C20orf203,CCM2L,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,FOXS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NOL4L,PDRG1,PLAGL2,POFUT1,REM1,SUN5,TM9SF4,TPX2,TTLL9,XKR7"
TCGA.AA.3812	20	26266312	62912462	11475	0.5479	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.AA.3860	20	26288534	51544355	6747	0.6778	SMALL-GAIN	NONFOCAL	240	Too-Many
TCGA.A6.2685	20	26288534	51920137	6925	0.4748	SMALL-GAIN	NONFOCAL	241	Too-Many
TCGA.AA.3560	20	26288534	62912462	11470	0.5282	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.AG.3602	20	26288534	62912462	11403	0.5109	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.CA.6716	20	26288534	62912462	11447	0.4788	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.AG.3584	20	26289924	62912462	11468	0.6481	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.DC.6160.01A	20	28241840	45819291	1880	0.452	SMALL-GAIN	NONFOCAL	207	Too-Many
TCGA.AG.3742	20	29505892	32773808	634	0.6566	SMALL-GAIN	NONFOCAL	52	"ACTL10,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CHMP4B,COMMD7,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DNMT3B,DUSP15,E2F1,EIF2S2,FOXS1,HCK,HM13,ID1,KIF3B,MAPRE1,MYLK2,NECAB3,NOL4L,PDRG1,PLAGL2,POFUT1,PXMP4,RALY,REM1,SNTA1,SUN5,TM9SF4,TPX2,TTLL9,XKR7,ZNF341"
TCGA.D5.5540	20	29505892	52643154	7202	0.6554	SMALL-GAIN	NONFOCAL	243	Too-Many
TCGA.AG.3893	20	29505892	52647807	7123	0.6381	SMALL-GAIN	NONFOCAL	243	Too-Many
TCGA.F4.6809	20	29505892	59111044	10255	0.5701	SMALL-GAIN	NONFOCAL	287	Too-Many
TCGA.5M.AATA	20	29505892	62912462	11453	0.4424	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.A6.2671	20	29505892	62912462	11451	0.6485	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.CI.6621	20	29505892	62912462	11455	0.6437	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.CM.5349	20	29505892	62912462	11460	0.4616	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.CM.6167	20	29505892	62912462	11467	0.611	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.D5.6535	20	29505892	62912462	11468	0.4667	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.D5.6929	20	29505892	62912462	11455	0.5211	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.D5.6932	20	29505892	62912462	11454	0.4631	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.EF.5830	20	29505892	62912462	11438	0.4625	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.RU.A8FL	20	29505892	62912462	11458	0.6068	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.SS.A7HO	20	29505892	62912462	11464	0.4449	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.DY.A1H8	20	29529824	30327088	91	0.4898	SMALL-GAIN	NONFOCAL	13	"BCL2L1,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,HM13,ID1,REM1,TPX2"
TCGA.D5.6538	20	29529824	52643154	7201	0.5864	SMALL-GAIN	NONFOCAL	243	Too-Many
TCGA.AA.3681	20	29537341	37186008	1520	0.426	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AD.6965	20	29567453	30511107	112	0.4151	SMALL-GAIN	NONFOCAL	17	"BCL2L1,COX4I2,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DUSP15,FOXS1,HM13,ID1,MYLK2,REM1,TPX2,TTLL9"
TCGA.AG.3727	20	29598226	36501904	1296	0.5321	SMALL-GAIN	NONFOCAL	106	Too-Many
TCGA.DM.A28A	20	29598226	42478218	3538	0.4217	SMALL-GAIN	NONFOCAL	135	Too-Many
TCGA.D5.6536	20	29598226	62912462	11458	0.3832	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.AG.A008.01A	20	29623125	55904887	2078	0.4058	SMALL-GAIN	NONFOCAL	259	Too-Many
TCGA.AG.A01L.01A	20	29845416	39792308	1049	0.6269	SMALL-GAIN	NONFOCAL	124	Too-Many
TCGA.CK.4948.01B	20	29845416	40040734	1235	0.485	SMALL-GAIN	NONFOCAL	128	Too-Many
TCGA.AF.2691	20	29846302	62912462	11453	0.5913	SMALL-GAIN	NONFOCAL	350	Too-Many
TCGA.DM.A0XF	20	29928408	41096781	2939	0.6247	SMALL-GAIN	NONFOCAL	127	Too-Many
TCGA.AG.3891.01A	20	30037784	35176388	726	0.5379	SMALL-GAIN	NONFOCAL	83	"AAR2,ACSS2,ACTL10,AHCY,ASIP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf173,C20orf203,CBFA2T2,CCM2L,CDK5RAP1,CEP250,CHMP4B,CNBD2,COMMD7,COX4I2,CPNE1,DEFB123,DEFB124,DLGAP4,DNMT3B,DUSP15,DYNLRB1,E2F1,EDEM2,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,FOXS1,GDF5,GGT7,GSS,HCK,HM13,ID1,ITCH,KIF3B,MAP1LC3A,MAPRE1,MMP24,MYH7B,MYL9,MYLK2,NCOA6,NECAB3,NFS1,NOL4L,PDRG1,PHF20,PIGU,PLAGL2,POFUT1,PROCR,PXMP4,RALY,RBM12,RBM39,REM1,ROMO1,SCAND1,SNTA1,SPAG4,SUN5,TM9SF4,TP53INP2,TPX2,TRPC4AP,TTLL9,UQCC1,XKR7,ZNF341"
TCGA.AA.3844	20	30061711	37747736	1617	0.6521	SMALL-GAIN	NONFOCAL	114	Too-Many
TCGA.AA.3848	20	30061711	62912462	11416	0.4527	SMALL-GAIN	NONFOCAL	343	Too-Many
TCGA.AA.3679	20	30443472	36540793	1211	0.6752	SMALL-GAIN	NONFOCAL	92	"AAR2,ACSS2,ACTL10,AHCY,ASIP,ASXL1,BLCAP,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf173,C20orf203,C20orf24,CBFA2T2,CCM2L,CDK5RAP1,CEP250,CHMP4B,CNBD2,COMMD7,CPNE1,CTNNBL1,DLGAP4,DNMT3B,DSN1,DUSP15,DYNLRB1,E2F1,EDEM2,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,GGT7,GHRH,GSS,HCK,ITCH,KIF3B,MANBAL,MAP1LC3A,MAPRE1,MMP24,MROH8,MYH7B,MYL9,NCOA6,NDRG3,NECAB3,NFS1,NNAT,NOL4L,PDRG1,PHF20,PIGU,PLAGL2,POFUT1,PROCR,PXMP4,RALY,RBL1,RBM12,RBM39,ROMO1,RPN2,SAMHD1,SCAND1,SLA2,SNTA1,SOGA1,SPAG4,SRC,SUN5,TGIF2,TGIF2-C20orf24,TLDC2,TM9SF4,TP53INP2,TRPC4AP,TTLL9,UQCC1,VSTM2L,XKR7,ZNF341"
TCGA.G4.6625	20	30900540	42460417	3357	0.633	SMALL-GAIN	NONFOCAL	111	Too-Many
TCGA.G4.6307	20	30956107	37018832	1282	0.5889	SMALL-GAIN	NONFOCAL	88	"AAR2,ACSS2,ACTL10,AHCY,ASIP,ASXL1,BLCAP,BPI,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf173,C20orf203,C20orf24,CBFA2T2,CDK5RAP1,CEP250,CHMP4B,CNBD2,COMMD7,CPNE1,CTNNBL1,DLGAP4,DNMT3B,DSN1,DYNLRB1,E2F1,EDEM2,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,GGT7,GHRH,GSS,ITCH,KIAA1755,LBP,MANBAL,MAP1LC3A,MAPRE1,MMP24,MROH8,MYH7B,MYL9,NCOA6,NDRG3,NECAB3,NFS1,NNAT,NOL4L,PHF20,PIGU,PROCR,PXMP4,RALY,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SNTA1,SOGA1,SPAG4,SRC,SUN5,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TP53INP2,TRPC4AP,TTI1,UQCC1,VSTM2L,ZNF341"
TCGA.AF.2689	20	30996610	49222858	5710	0.6575	SMALL-GAIN	NONFOCAL	205	Too-Many
TCGA.AA.3697	20	31013975	32489893	388	0.554	SMALL-GAIN	NONFOCAL	25	"ACTL10,ASXL1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CDK5RAP1,CHMP4B,COMMD7,DNMT3B,E2F1,MAPRE1,NECAB3,NOL4L,PXMP4,SNTA1,SUN5,ZNF341"
TCGA.DM.A285	20	31027513	33279852	495	0.6432	SMALL-GAIN	NONFOCAL	32	"ACTL10,AHCY,ASIP,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf144,C20orf203,CBFA2T2,CDK5RAP1,CHMP4B,COMMD7,DNMT3B,DYNLRB1,E2F1,EIF2S2,ITCH,MAP1LC3A,MAPRE1,NECAB3,NOL4L,PIGU,PXMP4,RALY,SNTA1,SUN5,ZNF341"
TCGA.AG.3883	20	31075695	62912462	11259	0.6218	SMALL-GAIN	NONFOCAL	324	Too-Many
TCGA.AM.5820	20	31625692	32537351	245	0.5122	SMALL-GAIN	NONFOCAL	17	"ACTL10,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB3,BPIFB4,BPIFB6,C20orf144,CBFA2T2,CDK5RAP1,CHMP4B,E2F1,NECAB3,PXMP4,SNTA1,ZNF341"
TCGA.AA.3842	20	31635585	62912462	11095	0.6052	SMALL-GAIN	NONFOCAL	316	Too-Many
TCGA.DM.A1DA	20	31659544	62912462	11079	0.3991	SMALL-GAIN	NONFOCAL	316	Too-Many
TCGA.T9.A92H	20	31925477	41516698	2740	0.5409	SMALL-GAIN	NONFOCAL	89	"AAR2,ACSS2,ACTL10,ACTR5,ADIG,AHCY,ARHGAP40,ASIP,BLCAP,BPI,C20orf144,C20orf173,C20orf24,CBFA2T2,CDK5RAP1,CEP250,CHD6,CHMP4B,CNBD2,CPNE1,CTNNBL1,DHX35,DLGAP4,DSN1,DYNLRB1,E2F1,EDEM2,EIF2S2,EIF6,EMILIN3,EPB41L1,ERGIC3,FAM83C,FAM83D,GDF5,GGT7,GHRH,GSS,ITCH,KIAA1755,LBP,LPIN3,MAFB,MANBAL,MAP1LC3A,MMP24,MROH8,MYH7B,MYL9,NCOA6,NDRG3,NECAB3,NFS1,NNAT,PHF20,PIGU,PLCG1,PPP1R16B,PROCR,PTPRT,PXMP4,RALGAPB,RALY,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SLC32A1,SNTA1,SOGA1,SPAG4,SRC,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TOP1,TP53INP2,TRPC4AP,TTI1,UQCC1,VSTM2L,ZHX3,ZNF341"
TCGA.AG.3906.01A	20	32295464	34095842	264	0.4805	SMALL-GAIN	NONFOCAL	26	"ACSS2,AHCY,ASIP,CEP250,CHMP4B,DYNLRB1,EDEM2,EIF2S2,EIF6,FAM83C,GDF5,GGT7,GSS,ITCH,MAP1LC3A,MMP24,MYH7B,NCOA6,PIGU,PROCR,PXMP4,RALY,TP53INP2,TRPC4AP,UQCC1,ZNF341"
TCGA.AA.3664	20	32349795	38195893	1282	0.4699	SMALL-GAIN	NONFOCAL	73	"AAR2,ACSS2,ACTR5,ADIG,AHCY,ARHGAP40,ASIP,BLCAP,BPI,C20orf173,C20orf24,CEP250,CHMP4B,CNBD2,CPNE1,CTNNBL1,DHX35,DLGAP4,DSN1,DYNLRB1,EDEM2,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,FAM83D,GDF5,GGT7,GHRH,GSS,ITCH,KIAA1755,LBP,MANBAL,MAP1LC3A,MMP24,MROH8,MYH7B,MYL9,NCOA6,NDRG3,NFS1,NNAT,PHF20,PIGU,PPP1R16B,PROCR,RALGAPB,RALY,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SLC32A1,SOGA1,SPAG4,SRC,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TP53INP2,TRPC4AP,TTI1,UQCC1,VSTM2L,ZNF341"
TCGA.AA.A02F.01A	20	32378807	47835856	1290	0.5625	SMALL-GAIN	NONFOCAL	167	Too-Many
TCGA.AG.3726	20	32684308	62912462	10824	0.6769	SMALL-GAIN	NONFOCAL	299	Too-Many
TCGA.AG.A00C.01A	20	32868792	35569382	416	0.5644	SMALL-GAIN	NONFOCAL	44	"AAR2,ACSS2,AHCY,C20orf173,C20orf24,CEP250,CNBD2,CPNE1,DLGAP4,DSN1,DYNLRB1,EDEM2,EIF6,EPB41L1,ERGIC3,FAM83C,GDF5,GGT7,GSS,ITCH,MAP1LC3A,MMP24,MYH7B,MYL9,NCOA6,NDRG3,NFS1,PHF20,PIGU,PROCR,RBM12,RBM39,ROMO1,SAMHD1,SCAND1,SLA2,SOGA1,SPAG4,TGIF2,TGIF2-C20orf24,TLDC2,TP53INP2,TRPC4AP,UQCC1"
TCGA.AA.3930.01A	20	33594189	34205016	111	0.4224	SMALL-GAIN	NONFOCAL	12	"C20orf173,CEP250,EDEM2,EIF6,ERGIC3,FAM83C,GDF5,MMP24,PROCR,SPAG4,TRPC4AP,UQCC1"
TCGA.AA.3984	20	33867247	34535372	118	0.5941	SMALL-GAIN	NONFOCAL	14	"C20orf173,CEP250,CPNE1,EIF6,ERGIC3,FAM83C,GDF5,NFS1,PHF20,RBM12,RBM39,ROMO1,SPAG4,UQCC1"
TCGA.G4.6315	20	34187312	62912462	10590	0.6327	SMALL-GAIN	NONFOCAL	275	Too-Many
TCGA.AA.3930.01A	20	34215160	36965466	353	0.3929	SMALL-GAIN	NONFOCAL	36	"AAR2,BLCAP,BPI,C20orf24,CNBD2,CPNE1,CTNNBL1,DLGAP4,DSN1,EPB41L1,GHRH,KIAA1755,MANBAL,MROH8,MYL9,NDRG3,NFS1,NNAT,PHF20,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SOGA1,SRC,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TTI1,VSTM2L"
TCGA.AG.3906.01A	20	34430478	35579798	140	0.5466	SMALL-GAIN	NONFOCAL	16	"AAR2,C20orf24,CNBD2,DLGAP4,DSN1,EPB41L1,MYL9,NDRG3,PHF20,SAMHD1,SCAND1,SLA2,SOGA1,TGIF2,TGIF2-C20orf24,TLDC2"
TCGA.AA.3984	20	34596370	62912462	10501	0.4013	SMALL-GAIN	NONFOCAL	267	Too-Many
TCGA.AA.3561	20	35448807	56556593	8061	0.6646	SMALL-GAIN	NONFOCAL	172	Too-Many
TCGA.AA.A01S	20	35556191	40926124	1816	0.51465	SMALL-GAIN	NONFOCAL	33	"ACTR5,ADIG,ARHGAP40,BLCAP,BPI,CHD6,CTNNBL1,DHX35,EMILIN3,FAM83D,GHRH,KIAA1755,LBP,LPIN3,MAFB,MANBAL,MROH8,NNAT,PLCG1,PPP1R16B,PTPRT,RALGAPB,RBL1,RPN2,RPRD1B,SAMHD1,SLC32A1,SRC,TGM2,TOP1,TTI1,VSTM2L,ZHX3"
TCGA.AA.A00D.01A	20	35724138	36983681	118	0.5263	SMALL-GAIN	NONFOCAL	16	"BLCAP,BPI,CTNNBL1,GHRH,KIAA1755,LBP,MANBAL,MROH8,NNAT,RBL1,RPN2,RPRD1B,SRC,TGM2,TTI1,VSTM2L"
TCGA.A6.3808.01A	20	35776137	44354175	648	0.5213	SMALL-GAIN	NONFOCAL	82	"ACTR5,ADA,ADIG,ARHGAP40,BLCAP,BPI,C20orf62,CHD6,CTNNBL1,DBNDD2,DHX35,EMILIN3,EPPIN,EPPIN-WFDC6,FAM83D,FITM2,GDAP1L1,GHRH,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,KIAA1755,L3MBTL1,LBP,LPIN3,MAFB,MANBAL,MATN4,MROH8,MYBL2,NNAT,OSER1,PABPC1L,PI3,PIGT,PKIG,PLCG1,PPP1R16B,PTPRT,R3HDML,RALGAPB,RBPJL,RIMS4,RPN2,RPRD1B,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC32A1,SLPI,SPINT3,SPINT4,SRC,SRSF6,STK4,SYS1,TGM2,TOMM34,TOP1,TOX2,TP53TG5,TTI1,TTPAL,VSTM2L,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZHX3"
TCGA.QG.A5Z1	20	35862543	42368192	2381	0.4864	SMALL-GAIN	NONFOCAL	36	"ACTR5,ADIG,ARHGAP40,BLCAP,BPI,CHD6,CTNNBL1,DHX35,EMILIN3,FAM83D,GHRH,GTSF1L,IFT52,KIAA1755,L3MBTL1,LBP,LPIN3,MAFB,MANBAL,MYBL2,NNAT,PLCG1,PPP1R16B,PTPRT,RALGAPB,RPN2,RPRD1B,SGK2,SLC32A1,SRC,SRSF6,TGM2,TOP1,TTI1,VSTM2L,ZHX3"
TCGA.DM.A285	20	35999881	43849997	2843	0.6182	SMALL-GAIN	NONFOCAL	57	"ACTR5,ADA,ADIG,ARHGAP40,BLCAP,BPI,C20orf62,CHD6,CTNNBL1,DHX35,EMILIN3,FAM83D,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,KIAA1755,L3MBTL1,LBP,LPIN3,MAFB,MYBL2,NNAT,OSER1,PABPC1L,PI3,PKIG,PLCG1,PPP1R16B,PTPRT,R3HDML,RALGAPB,RIMS4,RPRD1B,SEMG1,SERINC3,SGK2,SLC32A1,SRC,SRSF6,STK4,TGM2,TOMM34,TOP1,TOX2,TTI1,TTPAL,VSTM2L,WFDC12,WFDC5,WISP2,YWHAB,ZHX3"
TCGA.AM.5820	20	36564393	37949054	406	0.5067	SMALL-GAIN	NONFOCAL	15	"ACTR5,ADIG,ARHGAP40,BPI,DHX35,FAM83D,KIAA1755,LBP,PPP1R16B,RALGAPB,RPRD1B,SLC32A1,TGM2,TTI1,VSTM2L"
TCGA.DY.A1DG	20	36737770	39521580	1045	0.6179	SMALL-GAIN	NONFOCAL	13	"ACTR5,ADIG,ARHGAP40,BPI,DHX35,FAM83D,KIAA1755,LBP,MAFB,PPP1R16B,RALGAPB,SLC32A1,TGM2"
TCGA.A6.5660	20	36866552	40162910	1132	0.4308	SMALL-GAIN	NONFOCAL	18	"ACTR5,ADIG,ARHGAP40,BPI,CHD6,DHX35,EMILIN3,FAM83D,KIAA1755,LBP,LPIN3,MAFB,PLCG1,PPP1R16B,RALGAPB,SLC32A1,TOP1,ZHX3"
TCGA.CA.5256	20	37018832	62912462	9917	0.6734	SMALL-GAIN	NONFOCAL	237	Too-Many
TCGA.NH.A6GC	20	37018832	62912462	9957	0.5485	SMALL-GAIN	NONFOCAL	237	Too-Many
TCGA.AG.3727	20	37024833	61519987	9728	0.4572	SMALL-GAIN	NONFOCAL	197	Too-Many
TCGA.AA.3875	20	37025797	62912462	9984	0.6374	SMALL-GAIN	NONFOCAL	237	Too-Many
TCGA.D5.6922	20	38078494	62912462	9661	0.6385	SMALL-GAIN	NONFOCAL	229	Too-Many
TCGA.AM.5820	20	38171185	47955130	3719	0.4805	SMALL-GAIN	NONFOCAL	95	"ACOT8,ADA,ARFGEF2,C20orf62,CD40,CDH22,CHD6,CSE1L,CTSA,DBNDD2,DDX27,DNTTIP1,ELMO2,EMILIN3,EPPIN,EPPIN-WFDC6,EYA2,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,LPIN3,MAFB,MATN4,MMP9,MYBL2,NCOA3,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLCG1,PLTP,PREX1,PTPRT,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,SRSF6,STAU1,STK4,SULF2,SYS1,TNNC2,TOMM34,TOP1,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZHX3,ZMYND8,ZNF334,ZNF335,ZNFX1,ZSWIM1,ZSWIM3"
TCGA.AA.A02K.01A	20	39830646	62366475	1673	0.4416	SMALL-GAIN	NONFOCAL	208	Too-Many
TCGA.AG.A01L.01A	20	40041923	44354175	313	0.6472	SMALL-GAIN	NONFOCAL	53	"ADA,C20orf62,CHD6,DBNDD2,EPPIN,EPPIN-WFDC6,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MATN4,MYBL2,OSER1,PABPC1L,PI3,PIGT,PKIG,PTPRT,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLPI,SPINT3,SPINT4,SRSF6,STK4,SYS1,TOMM34,TOX2,TP53TG5,TTPAL,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB"
TCGA.AG.A01W.01A	20	40142863	56475552	1085	0.414	SMALL-GAIN	NONFOCAL	139	Too-Many
TCGA.CK.4948.01B	20	40179859	58422077	1215	0.4596	SMALL-GAIN	NONFOCAL	155	Too-Many
TCGA.AA.A01S	20	40931856	62912462	8573	0.52135	SMALL-GAIN	NONFOCAL	222	Too-Many
TCGA.DM.A0XF	20	41103172	62912462	8488	0.6775	SMALL-GAIN	NONFOCAL	222	Too-Many
TCGA.AA.3696	20	41250406	62912462	8410	0.4416	SMALL-GAIN	NONFOCAL	222	Too-Many
TCGA.D5.5537	20	41538982	62912462	8200	0.4935	SMALL-GAIN	NONFOCAL	222	Too-Many
TCGA.T9.A92H	20	41707147	52067792	3702	0.4517	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.AA.3844	20	41746709	51356519	3339	0.5998	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.AA.3664	20	41948035	62912462	8065	0.4009	SMALL-GAIN	NONFOCAL	221	Too-Many
TCGA.AG.A00C.01A	20	42088361	43623703	159	0.553	SMALL-GAIN	NONFOCAL	25	"ADA,C20orf62,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,L3MBTL1,MYBL2,OSER1,PABPC1L,PKIG,R3HDML,RIMS4,SERINC3,SGK2,SRSF6,STK4,TOMM34,TOX2,TTPAL,WISP2,YWHAB"
TCGA.AG.3891.01A	20	42315480	45910809	430	0.3927	SMALL-GAIN	NONFOCAL	75	"ACOT8,ADA,C20orf62,CD40,CDH22,CTSA,DBNDD2,DNTTIP1,ELMO2,EPPIN,EPPIN-WFDC6,EYA2,FITM2,GDAP1L1,GTSF1L,HNF4A,JPH2,KCNK15,KCNS1,MATN4,MMP9,MYBL2,NCOA5,NEURL2,OCSTAMP,OSER1,PABPC1L,PCIF1,PI3,PIGT,PKIG,PLTP,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLPI,SNX21,SPATA25,SPINT3,SPINT4,STK4,SYS1,TNNC2,TOMM34,TOX2,TP53RK,TP53TG5,TTPAL,UBE2C,WFDC10A,WFDC10B,WFDC11,WFDC12,WFDC13,WFDC2,WFDC3,WFDC5,WFDC6,WFDC8,WFDC9,WISP2,YWHAB,ZMYND8,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AA.A00D.01A	20	42331082	55904887	838	0.6655	SMALL-GAIN	NONFOCAL	126	Too-Many
TCGA.CI.6624	20	42375399	53762528	4224	0.4495	SMALL-GAIN	NONFOCAL	111	Too-Many
TCGA.AD.6965	20	42425258	52540605	3605	0.6555	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AZ.6606	20	42731843	43497184	220	0.5411	SMALL-GAIN	NONFOCAL	14	"ADA,C20orf62,FITM2,GDAP1L1,HNF4A,JPH2,KCNK15,OSER1,PKIG,R3HDML,RIMS4,SERINC3,TTPAL,WISP2"
TCGA.AA.3850	20	42736728	43488770	216	0.44395	SMALL-GAIN	NONFOCAL	14	"ADA,C20orf62,FITM2,GDAP1L1,HNF4A,JPH2,KCNK15,OSER1,PKIG,R3HDML,RIMS4,SERINC3,TTPAL,WISP2"
TCGA.AG.3906.01A	20	42743380	43399867	67	0.4227	SMALL-GAIN	NONFOCAL	14	"ADA,C20orf62,FITM2,GDAP1L1,HNF4A,JPH2,KCNK15,OSER1,PKIG,R3HDML,RIMS4,SERINC3,TTPAL,WISP2"
TCGA.AA.3511	20	43260693	62856120	7602	0.5643	SMALL-GAIN	NONFOCAL	203	Too-Many
TCGA.AZ.6606	20	43548738	56127929	4958	0.4887	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.AG.3906.01A	20	43653597	55915095	737	0.3983	SMALL-GAIN	NONFOCAL	106	Too-Many
TCGA.AG.A00C.01A	20	43922340	55904887	703	0.4867	SMALL-GAIN	NONFOCAL	98	"ACOT8,ADNP,ARFGEF2,ATP9A,AURKA,B4GALT5,BCAS1,BCAS4,BMP7,CASS4,CBLN4,CD40,CDH22,CEBPB,CSE1L,CSTF1,CTSA,CYP24A1,DBNDD2,DDX27,DNTTIP1,DOK5,DPM1,ELMO2,EPPIN,EPPIN-WFDC6,EYA2,FAM209A,FAM209B,FAM210B,FAM65C,GCNT7,KCNB1,KCNG1,LINC01272,MATN4,MC3R,MMP9,MOCS3,NCOA3,NCOA5,NEURL2,NFATC2,OCSTAMP,PARD6B,PCIF1,PFDN4,PIGT,PLTP,PREX1,PTGIS,PTPN1,RBPJL,RNF114,RTFDC1,SALL4,SDC4,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SLC9A8,SNAI1,SNX21,SPATA2,SPATA25,SPINT3,SPINT4,SPO11,STAU1,SULF2,SYS1,TFAP2C,TMEM189,TMEM189-UBE2V1,TNNC2,TP53RK,TP53TG5,TSHZ2,UBE2C,UBE2V1,WFDC10A,WFDC10B,WFDC11,WFDC13,WFDC2,WFDC3,WFDC6,WFDC8,WFDC9,ZFP64,ZMYND8,ZNF217,ZNF334,ZNF335,ZNFX1,ZSWIM1,ZSWIM3"
TCGA.A6.2675	20	43975450	59972541	6659	0.5189	SMALL-GAIN	NONFOCAL	125	Too-Many
TCGA.AA.3494	20	44050341	62912462	7386	0.5365	SMALL-GAIN	NONFOCAL	183	Too-Many
TCGA.AA.3982	20	44090097	44403107	132	0.6251	SMALL-GAIN	NONFOCAL	13	"EPPIN,EPPIN-WFDC6,SPINT3,SPINT4,WFDC10A,WFDC10B,WFDC11,WFDC13,WFDC2,WFDC3,WFDC6,WFDC8,WFDC9"
TCGA.AZ.4682	20	44380846	59897161	6498	0.6708	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AG.3898	20	44400450	46852793	969	0.4557	SMALL-GAIN	NONFOCAL	30	"ACOT8,CD40,CDH22,CTSA,DNTTIP1,ELMO2,EYA2,MMP9,NCOA3,NCOA5,NEURL2,OCSTAMP,PCIF1,PLTP,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SNX21,SPATA25,SULF2,TNNC2,TP53RK,UBE2C,WFDC3,ZMYND8,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.AG.A01L.01A	20	44567617	62904524	1045	0.6646	SMALL-GAIN	NONFOCAL	158	Too-Many
TCGA.A6.3808.01A	20	44596894	47558354	242	0.5607	SMALL-GAIN	NONFOCAL	19	"ARFGEF2,CD40,CDH22,ELMO2,EYA2,MMP9,NCOA3,NCOA5,OCSTAMP,PREX1,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SULF2,TP53RK,ZMYND8,ZNF334,ZNF335"
TCGA.AG.3891.01A	20	46250937	57485691	520	0.4669	SMALL-GAIN	NONFOCAL	66	"ADNP,ANKRD60,APCDD1L,ARFGEF2,ATP9A,AURKA,B4GALT5,BCAS1,BCAS4,BMP7,C20orf85,CASS4,CBLN4,CEBPB,CSE1L,CSTF1,CTCFL,CYP24A1,DDX27,DOK5,DPM1,FAM209A,FAM209B,FAM210B,FAM65C,GCNT7,GNAS,KCNB1,KCNG1,LINC01272,MC3R,MOCS3,MTRNR2L3,NCOA3,NFATC2,NPEPL1,PARD6B,PCK1,PFDN4,PMEPA1,PREX1,PTGIS,PTPN1,RAB22A,RAE1,RBM38,RNF114,RTFDC1,SALL4,SLC9A8,SNAI1,SPATA2,SPO11,STAU1,STX16,SULF2,TFAP2C,TMEM189,TMEM189-UBE2V1,TSHZ2,UBE2V1,VAPB,ZBP1,ZFP64,ZNF217,ZNFX1"
TCGA.AG.3898	20	46865766	50746650	1261	0.5331	SMALL-GAIN	NONFOCAL	30	"ADNP,ARFGEF2,ATP9A,B4GALT5,BCAS4,CEBPB,CSE1L,DDX27,DPM1,FAM65C,KCNB1,KCNG1,LINC01272,MOCS3,NFATC2,PARD6B,PREX1,PTGIS,PTPN1,RNF114,SALL4,SLC9A8,SNAI1,SPATA2,STAU1,TMEM189,TMEM189-UBE2V1,UBE2V1,ZFP64,ZNFX1"
TCGA.AA.A02F.01A	20	47842916	60713179	461	0.4276	SMALL-GAIN	NONFOCAL	77	"ADNP,ANKRD60,APCDD1L,ATP5E,ATP9A,AURKA,B4GALT5,BCAS1,BCAS4,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CDH4,CEBPB,CSTF1,CTCFL,CTSZ,CYP24A1,DDX27,DOK5,DPM1,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,FAM65C,GCNT7,GNAS,KCNB1,KCNG1,LINC01272,LSM14B,MC3R,MOCS3,MTRNR2L3,NELFCD,NFATC2,NPEPL1,PARD6B,PCK1,PFDN4,PHACTR3,PMEPA1,PPP1R3D,PSMA7,PTGIS,PTPN1,RAB22A,RAE1,RBM38,RNF114,RTFDC1,SALL4,SLC9A8,SLMO2,SNAI1,SPATA2,SPO11,STX16,SYCP2,TAF4,TFAP2C,TMEM189,TMEM189-UBE2V1,TSHZ2,TUBB1,UBE2V1,VAPB,ZBP1,ZFP64,ZNF217,ZNF831,ZNFX1"
TCGA.AG.A01Y	20	48934777	62912462	5616	0.4068	SMALL-GAIN	NONFOCAL	122	Too-Many
TCGA.AA.A02Y	20	49057247	62912462	5593	0.4606	SMALL-GAIN	NONFOCAL	122	Too-Many
TCGA.AF.2689	20	49457268	62912462	5505	0.6377	SMALL-GAIN	NONFOCAL	119	Too-Many
TCGA.AZ.6598	20	50660897	62912462	5024	0.4637	SMALL-GAIN	NONFOCAL	111	Too-Many
TCGA.AA.3972	20	50823868	55387287	2012	0.5643	SMALL-GAIN	NONFOCAL	17	"AURKA,BCAS1,CASS4,CBLN4,CSTF1,CYP24A1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,MC3R,PFDN4,RTFDC1,TFAP2C,TSHZ2,ZNF217"
TCGA.AG.3583	20	50839273	60035377	4165	0.3872	SMALL-GAIN	NONFOCAL	48	"ANKRD60,APCDD1L,ATP5E,AURKA,BCAS1,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CDH4,CSTF1,CTCFL,CTSZ,CYP24A1,DOK5,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PFDN4,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TSHZ2,TUBB1,VAPB,ZBP1,ZNF217,ZNF831"
TCGA.A6.2685	20	51923490	62912462	4514	0.4165	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.AA.3860	20	52654546	62912462	4257	0.6508	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.D5.5540	20	52657716	62912462	4257	0.6307	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AH.6644	20	52658592	62912462	4254	0.5929	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.D5.6538	20	52658592	62912462	4251	0.5743	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.AA.3979	20	52666884	59678913	3371	0.4885	SMALL-GAIN	NONFOCAL	45	"ANKRD60,APCDD1L,ATP5E,AURKA,BCAS1,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CSTF1,CTCFL,CTSZ,CYP24A1,DOK5,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PFDN4,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AG.3893	20	52666884	62912462	4222	0.6255	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.A6.3807	20	52671131	62912462	4236	0.4655	SMALL-GAIN	NONFOCAL	108	Too-Many
TCGA.CM.5348	20	52742589	62912462	4192	0.5643	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AG.A01N.01A	20	52773668	57770883	189	0.6124	SMALL-GAIN	NONFOCAL	37	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf85,CASS4,CBLN4,CSTF1,CTCFL,CTSZ,CYP24A1,DOK5,FAM209A,FAM209B,FAM210B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PFDN4,PMEPA1,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.DM.A285	20	53019532	62912462	4066	0.4368	SMALL-GAIN	NONFOCAL	105	Too-Many
TCGA.CI.6624	20	54153721	60536334	3070	0.4738	SMALL-GAIN	NONFOCAL	42	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf197,C20orf85,CASS4,CBLN4,CDH26,CDH4,CSTF1,CTCFL,CTSZ,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.F4.6460	20	54699000	62912462	3280	0.6236	SMALL-GAIN	NONFOCAL	103	Too-Many
TCGA.DM.A1HA	20	54726568	59012774	2032	0.4939	SMALL-GAIN	NONFOCAL	40	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf197,C20orf85,CASS4,CDH26,CSTF1,CTCFL,CTSZ,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MC3R,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AA.3844	20	54827770	62912462	3199	0.5836	SMALL-GAIN	NONFOCAL	102	Too-Many
TCGA.AA.3811	20	54828383	60153891	2568	0.5898	SMALL-GAIN	NONFOCAL	40	"ANKRD60,APCDD1L,ATP5E,AURKA,BMP7,C20orf197,C20orf85,CASS4,CDH26,CDH4,CSTF1,CTCFL,CTSZ,EDN3,FAM209A,FAM209B,FAM210B,FAM217B,GCNT7,GNAS,MTRNR2L3,NELFCD,NPEPL1,PCK1,PHACTR3,PMEPA1,PPP1R3D,RAB22A,RAE1,RBM38,RTFDC1,SLMO2,SPO11,STX16,SYCP2,TFAP2C,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AG.A008.01A	20	55953046	62863500	490	0.4998	SMALL-GAIN	NONFOCAL	89	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTCFL,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCK1,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RAE1,RBBP8NL,RBM38,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBP1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.DY.A1DF	20	55978997	58016186	925	0.5819	SMALL-GAIN	NONFOCAL	20	"ANKRD60,APCDD1L,ATP5E,C20orf85,CTCFL,CTSZ,EDN3,GNAS,NELFCD,NPEPL1,PCK1,PMEPA1,RAB22A,RBM38,SLMO2,STX16,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AM.5820	20	55991822	60867780	2245	0.566	SMALL-GAIN	NONFOCAL	33	"ANKRD60,APCDD1L,ATP5E,C20orf197,C20orf85,CDH26,CDH4,CTCFL,CTSZ,EDN3,FAM217B,GNAS,HRH3,LSM14B,MTG2,NELFCD,NPEPL1,OSBPL2,PCK1,PHACTR3,PMEPA1,PPP1R3D,PSMA7,RAB22A,SLMO2,SS18L1,STX16,SYCP2,TAF4,TUBB1,VAPB,ZBP1,ZNF831"
TCGA.AG.3906.01A	20	56063399	57485691	73	0.4317	SMALL-GAIN	NONFOCAL	12	"ANKRD60,APCDD1L,C20orf85,CTCFL,GNAS,NPEPL1,PCK1,PMEPA1,RAB22A,STX16,VAPB,ZBP1"
TCGA.AZ.6606	20	56131052	62912462	2568	0.4885	SMALL-GAIN	NONFOCAL	87	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCK1,PCMTD2,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBP1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.AZ.4681	20	56708291	62912462	2282	0.4602	SMALL-GAIN	NONFOCAL	84	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.AG.A00Y.01A	20	57045616	62904524	411	0.5733	SMALL-GAIN	NONFOCAL	80	"ABHD16B,ADRM1,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM217B,GATA5,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,TUBB1,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.DC.6683	20	57046684	58608978	639	0.6023	SMALL-GAIN	NONFOCAL	16	"APCDD1L,ATP5E,CDH26,CTSZ,EDN3,FAM217B,GNAS,NELFCD,NPEPL1,PHACTR3,PPP1R3D,SLMO2,STX16,SYCP2,TUBB1,ZNF831"
TCGA.AD.6965	20	57961571	62912462	1776	0.4908	SMALL-GAIN	NONFOCAL	69	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PHACTR3,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,SYCP2,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.CK.4948.01B	20	58518952	62904524	592	0.3887	SMALL-GAIN	NONFOCAL	66	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,C20orf197,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,FAM217B,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AF.3913	20	58790002	62912462	1387	0.4568	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.G4.6625	20	59050688	62912462	1221	0.4339	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DC.4745	20	59128380	62912462	1192	0.6415	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.F4.6809	20	59128380	62912462	1186	0.5249	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DY.A1H8	20	59493090	62912462	994	0.4381	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.G4.6299	20	59630995	62912462	914	0.4527	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3979	20	59685667	62912462	866	0.5176	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A00O.01A	20	59829835	62904524	217	0.4666	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.NH.A50T	20	59870372	62912462	755	0.6731	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DM.A28H	20	60276962	62912462	578	0.3976	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.2675	20	60515274	62912462	492	0.4404	SMALL-GAIN	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A02H.01A	20	60575133	62904524	200	0.5515	SMALL-GAIN	NONFOCAL	62	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A00L.01A	20	60879467	61460729	64	0.5131	SMALL-GAIN	NONFOCAL	12	"ADRM1,CABLES2,COL9A3,GATA5,LAMA5,MIR1-1HG,MRGBP,NTSR1,OGFR,RBBP8NL,RPS21,SLCO4A1"
TCGA.AD.A5EK	20	61445311	62664635	209	0.3976	SMALL-GAIN	NONFOCAL	37	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,NKAIN4,OGFR,PPDPF,PRPF6,PTK6,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SRMS,STMN3,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3534	20	61467984	62912462	274	0.5013	SMALL-GAIN	NONFOCAL	44	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A017.01A	20	61469973	62904524	126	0.4969	SMALL-GAIN	NONFOCAL	44	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.3727	20	61540318	62912462	250	0.5368	SMALL-GAIN	NONFOCAL	41	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,DIDO1,DNAJC5,EEF1A2,GID8,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.A00C.01A	20	61596931	62904524	153	0.4518	SMALL-GAIN	NONFOCAL	39	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.3695	20	61717983	62912462	216	0.6402	SMALL-GAIN	NONFOCAL	37	"ABHD16B,ARFGAP1,ARFRP1,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PCMTD2,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A00L.01A	20	61869207	62292600	66	0.5006	SMALL-GAIN	NONFOCAL	15	"ARFGAP1,BIRC7,C20orf195,CHRNA4,COL20A1,EEF1A2,GMEB2,HELZ2,KCNQ2,NKAIN4,PPDPF,PTK6,RTEL1,SRMS,STMN3"
TCGA.CI.6624	20	62157645	62912462	135	0.6711	SMALL-GAIN	NONFOCAL	28	"ABHD16B,ARFRP1,C20orf195,DNAJC5,GMEB2,HELZ2,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.3909.01A	20	62309448	62839472	78	0.4668	SMALL-GAIN	NONFOCAL	21	"ABHD16B,ARFRP1,DNAJC5,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PRPF6,RGS19,RTEL1,SAMD10,SLC2A4RG,SOX18,TCEA2,TNFRSF6B,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A00L.01A	20	62311958	62612538	45	0.5044	SMALL-GAIN	NONFOCAL	14	"ABHD16B,ARFRP1,DNAJC5,LIME1,PRPF6,RTEL1,SAMD10,SLC2A4RG,TNFRSF6B,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AG.3891.01A	20	62364531	62729118	60	0.6053	SMALL-GAIN	NONFOCAL	16	"ABHD16B,DNAJC5,LIME1,LKAAEAR1,OPRL1,PRPF6,RGS19,SAMD10,SLC2A4RG,SOX18,TCEA2,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A00A.01A	21	10906883	27136854	132	0.5439	SMALL-GAIN	NONFOCAL	24	"ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.A00Q.01A	21	10906883	27284044	139	0.4744	SMALL-GAIN	NONFOCAL	25	"APP,ATP5J,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.A6.5662	21	10971565	19816472	1630	0.4741	SMALL-GAIN	NONFOCAL	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AG.4021	21	10971565	42310696	10298	0.416	SMALL-GAIN	NONFOCAL	136	Too-Many
TCGA.D5.5539	21	10971565	48084819	12278	0.4348	SMALL-GAIN	NONFOCAL	219	Too-Many
TCGA.QG.A5YW	21	10971565	48084819	12198	0.5369	SMALL-GAIN	NONFOCAL	219	Too-Many
TCGA.AZ.5407	21	14595263	48084819	12280	0.4134	SMALL-GAIN	NONFOCAL	213	Too-Many
TCGA.AA.A01Z	21	14736297	19698263	1584	0.4926	SMALL-GAIN	NONFOCAL	13	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AG.A011.01A	21	15011789	48084135	1551	0.3788	SMALL-GAIN	NONFOCAL	213	Too-Many
TCGA.DM.A28K	21	23674286	30697722	2671	0.4639	SMALL-GAIN	NONFOCAL	15	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,CCT8,CYYR1,GABPA,JAM2,LTN1,MAP3K7CL,MRPL39,N6AMT1,RWDD2B,USP16"
TCGA.AA.A00A.01A	21	30248660	41300868	689	0.5399	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.DM.A28K	21	30953342	48084819	6430	0.4983	SMALL-GAIN	NONFOCAL	184	Too-Many
TCGA.A6.5662	21	31440068	35247379	1220	0.5148	SMALL-GAIN	NONFOCAL	60	"C21orf59,C21orf62,CLDN17,CLDN8,CRYZL1,DNAJC28,DONSON,EVA1C,GART,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,MIS18A,MRAP,OLIG1,OLIG2,PAXBP1,SCAF4,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1"
TCGA.AA.A01Z	21	32676359	39372633	2424	0.4768	SMALL-GAIN	NONFOCAL	52	"ATP5O,C21orf140,C21orf59,C21orf62,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,DSCR3,DYRK1A,EVA1C,GART,HLCS,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,KCNJ6,LOC400863,MIS18A,MORC3,MRAP,MRPS6,OLIG1,OLIG2,PAXBP1,PIGP,RCAN1,RIPPLY3,RUNX1,SCAF4,SETD4,SIM2,SLC5A3,SMIM11,SOD1,SON,SYNJ1,TCP10L,TIAM1,TMEM50B,TTC3,URB1"
TCGA.AA.3660	21	34449326	35370487	280	0.4403	SMALL-GAIN	NONFOCAL	13	"ATP5O,CRYZL1,DNAJC28,DONSON,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,LOC400863,SON,TMEM50B"
TCGA.AA.A00D.01A	21	35091047	38380389	161	0.5653	SMALL-GAIN	NONFOCAL	22	"ATP5O,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,HLCS,ITSN1,KCNE1,KCNE2,LOC400863,MORC3,MRPS6,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SLC5A3,SMIM11"
TCGA.AA.3979	21	35271199	42832540	3251	0.5421	SMALL-GAIN	NONFOCAL	45	"ATP5O,B3GALT5,BACE2,BRWD1,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,FAM3B,HLCS,HMGN1,IGSF5,KCNE1,KCNE2,KCNJ15,KCNJ6,LCA5L,LOC400863,MORC3,MRPS6,MX1,MX2,PCP4,PIGP,PLAC4,PSMG1,RCAN1,RIPPLY3,RUNX1,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,TTC3,WRB"
TCGA.AA.A010.01A	21	35497614	37635797	77	0.4232	SMALL-GAIN	NONFOCAL	12	"C21orf140,CBR1,CBR3,CLIC6,DOPEY2,KCNE1,KCNE2,MRPS6,RCAN1,RUNX1,SETD4,SMIM11"
TCGA.AA.3666	21	35641867	39462322	1482	0.3931	SMALL-GAIN	NONFOCAL	23	"C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCR3,DSCR4,DYRK1A,HLCS,KCNE1,KCNE2,KCNJ6,MORC3,PIGP,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SMIM11,TTC3"
TCGA.EF.5830	21	36661050	38489244	674	0.4391	SMALL-GAIN	NONFOCAL	12	"CBR1,CBR3,CHAF1B,CLDN14,DOPEY2,HLCS,MORC3,PIGP,RIPPLY3,SETD4,SIM2,TTC3"
TCGA.AA.A00D.01A	21	38468813	45950875	573	0.4785	SMALL-GAIN	NONFOCAL	63	"ABCG1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ERVH48-1,ETS2,FAM3B,HMGN1,HSF2BP,ICOSLG,IGSF5,KCNJ15,KCNJ6,LCA5L,LRRC3,MX1,MX2,NDUFV3,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,PRDM15,PSMG1,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SH3BGR,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,TTC3,U2AF1,UBASH3A,UMODL1,WDR4,WRB,ZBTB21"
TCGA.AA.A00Q.01A	21	38498345	42870002	222	0.438	SMALL-GAIN	NONFOCAL	24	"B3GALT5,BACE2,BRWD1,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,FAM3B,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,MX1,MX2,PCP4,PLAC4,PSMG1,SH3BGR,TMPRSS2,TTC3,WRB"
TCGA.AA.3666	21	40735605	43322488	1283	0.436	SMALL-GAIN	NONFOCAL	16	"B3GALT5,BACE2,C2CD2,DSCAM,FAM3B,IGSF5,LCA5L,MX1,MX2,PCP4,PLAC4,PRDM15,RIPK4,SH3BGR,TMPRSS2,WRB"
TCGA.EF.5830	21	41606325	47630549	2203	0.5183	SMALL-GAIN	NONFOCAL	77	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MX1,MX2,NDUFV3,PCBP3,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,ZBTB21"
TCGA.AA.3979	21	43078848	48077811	1637	0.5254	SMALL-GAIN	NONFOCAL	77	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.AM.5820	21	44457457	46839569	708	0.4426	SMALL-GAIN	NONFOCAL	45	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,CBS,COL18A1,CRYAA,CSTB,DNMT3L,FAM207A,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,PDXK,PFKL,POFUT2,PTTG1IP,PWP2,RRP1,RRP1B,SIK1,SUMO3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBE2G2"
TCGA.AA.3666	21	45679089	46711473	339	0.5443	SMALL-GAIN	NONFOCAL	30	"ADARB1,AIRE,C21orf2,DNMT3L,FAM207A,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,PFKL,POFUT2,PTTG1IP,SUMO3,TRPM2,TSPEAR,UBE2G2"
TCGA.AA.A00D.01A	21	46197167	48084135	196	0.5589	SMALL-GAIN	NONFOCAL	22	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FAM207A,FTCD,ITGB2,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,UBE2G2,YBEY"
TCGA.AA.A00Q.01A	21	46363569	48084135	188	0.3957	SMALL-GAIN	NONFOCAL	18	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FAM207A,FTCD,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.RU.A8FL	22	16055206	25719912	2229	0.3884	SMALL-GAIN	NONFOCAL	122	Too-Many
TCGA.AA.3494	22	16055206	51186227	11152	0.4953	SMALL-GAIN	NONFOCAL	426	Too-Many
TCGA.AG.3612	22	16055206	51186227	11051	0.4347	SMALL-GAIN	NONFOCAL	426	Too-Many
TCGA.AA.A00D.01A	22	17071738	20077195	209	0.3832	SMALL-GAIN	NONFOCAL	41	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,MRPL40,PEX26,PRODH,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3"
TCGA.AA.A00A.01A	22	17071738	21159214	287	0.387	SMALL-GAIN	NONFOCAL	55	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,MED15,MICAL3,MRPL40,PEX26,PI4KA,PRODH,RANBP1,RIMBP3,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC25A18,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8,ZNF74"
TCGA.AA.3850	22	17321767	22490836	1318	0.43515	SMALL-GAIN	NONFOCAL	74	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,P2RX6,PEX26,PI4KA,PPIL2,PPM1F,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.AY.4071	22	18877786	21806400	630	0.4002	SMALL-GAIN	NONFOCAL	49	"AIFM3,ARVCF,C22orf29,C22orf39,CDC45,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GNB1L,GP1BB,GSC2,HIC2,HIRA,KLHL22,LOC388849,LRRC74B,LZTR1,MED15,MRPL40,P2RX6,PI4KA,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SEPT5,SERPIND1,SLC25A1,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TRMT2A,TSSK2,TXNRD2,UFD1L,ZDHHC8,ZNF74"
TCGA.AG.A00Y.01A	22	20717836	22279789	169	0.5371	SMALL-GAIN	NONFOCAL	26	"AIFM3,CCDC116,CRKL,HIC2,KLHL22,LRRC74B,LZTR1,MAPK1,MED15,P2RX6,PI4KA,PPIL2,PPM1F,RIMBP3B,RIMBP3C,SCARF2,SDF2L1,SERPIND1,SLC7A4,SNAP29,THAP7,TMEM191C,UBE2L3,YDJC,YPEL1,ZNF74"
TCGA.QG.A5Z1	22	20844662	22157660	239	0.3974	SMALL-GAIN	NONFOCAL	23	"AIFM3,CCDC116,CRKL,HIC2,KLHL22,LRRC74B,LZTR1,MAPK1,MED15,P2RX6,PI4KA,PPIL2,RIMBP3B,RIMBP3C,SDF2L1,SERPIND1,SLC7A4,SNAP29,THAP7,TMEM191C,UBE2L3,YDJC,YPEL1"
TCGA.CI.6619	22	20956162	22708287	425	0.5173	SMALL-GAIN	NONFOCAL	24	"AIFM3,CCDC116,CRKL,HIC2,LRRC74B,LZTR1,MAPK1,P2RX6,PI4KA,PPIL2,PPM1F,RIMBP3B,RIMBP3C,SDF2L1,SERPIND1,SLC7A4,SNAP29,THAP7,TMEM191C,TOP3B,UBE2L3,VPREB1,YDJC,YPEL1"
TCGA.AG.A00Y.01A	22	24040351	30398820	521	0.6257	SMALL-GAIN	NONFOCAL	69	"ADORA2A,ADRBK2,AP1B1,ASCC2,ASPHD2,C22orf15,C22orf31,CABIN1,CABP7,CCDC117,CHCHD10,CHEK2,CRYBA4,CRYBB1,CRYBB2,CRYBB3,DDT,DDTL,DERL3,EMID1,EWSR1,GAS2L1,GGT1,GGT5,GSTT1,GSTT2,GSTT2B,GUCD1,HPS4,HSCB,KIAA1671,KREMEN1,LOC391322,LRP5L,LRRC75B,MIF,MMP11,MN1,MTMR3,MYO18B,NEFH,NF2,NIPSNAP1,PITPNB,PIWIL3,RASL10A,RFPL1,RGL4,RHBDD3,SEZ6L,SGSM1,SLC2A11,SMARCB1,SNRPD3,SPECC1L,SRRD,SUSD2,TFIP11,THOC5,TMEM211,TPST2,TTC28,UPB1,UQCR10,VPREB3,XBP1,ZMAT5,ZNF70,ZNRF3"
TCGA.AA.A00D.01A	22	24734302	26118236	91	0.4227	SMALL-GAIN	NONFOCAL	15	"ADORA2A,ADRBK2,CRYBB2,CRYBB3,GGT1,GUCD1,KIAA1671,LRP5L,LRRC75B,PIWIL3,SGSM1,SNRPD3,SPECC1L,TMEM211,UPB1"
TCGA.AA.A010.01A	22	25010695	26773589	156	0.6406	SMALL-GAIN	NONFOCAL	11	"ADRBK2,CRYBB2,CRYBB3,GGT1,KIAA1671,LRP5L,MYO18B,PIWIL3,SEZ6L,SGSM1,TMEM211"
TCGA.A6.3808.01A	22	25131647	28292476	200	0.4727	SMALL-GAIN	NONFOCAL	19	"ADRBK2,ASPHD2,CRYBA4,CRYBB1,CRYBB2,CRYBB3,HPS4,KIAA1671,LRP5L,MN1,MYO18B,PITPNB,PIWIL3,SEZ6L,SGSM1,SRRD,TFIP11,TMEM211,TPST2"
TCGA.AA.A00A.01A	22	26701897	31741081	401	0.4146	SMALL-GAIN	NONFOCAL	62	"AP1B1,ASCC2,ASPHD2,C22orf31,CABP7,CCDC117,CCDC157,CHEK2,CRYBA4,CRYBB1,DUSP18,EMID1,EWSR1,GAL3ST1,GAS2L1,GATSL3,HORMAD2,HPS4,HSCB,INPP5J,KREMEN1,LIF,LIMK2,MN1,MORC2,MTFP1,MTMR3,NEFH,NF2,NIPSNAP1,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PITPNB,PLA2G3,RASL10A,RFPL1,RHBDD3,RNF185,RNF215,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SEZ6L,SF3A1,SLC35E4,SMTN,SRRD,TBC1D10A,TCN2,TFIP11,THOC5,TPST2,TTC28,UQCR10,XBP1,ZMAT5,ZNRF3"
TCGA.DM.A1D7	22	30239916	33606238	1026	0.465	SMALL-GAIN	NONFOCAL	47	"BPIFC,C22orf24,C22orf42,CCDC157,DEPDC5,DRG1,DUSP18,EIF4ENIF1,FBXO7,GAL3ST1,GATSL3,HORMAD2,INPP5J,LIF,LIMK2,MORC2,MTFP1,MTMR3,OSBP2,OSM,PATZ1,PES1,PIK3IP1,PISD,PLA2G3,PRR14L,RFPL2,RFPL3,RNF185,RNF215,RTCB,SEC14L2,SEC14L3,SEC14L4,SEC14L6,SELM,SF3A1,SFI1,SLC35E4,SLC5A1,SLC5A4,SMTN,SYN3,TBC1D10A,TCN2,TIMP3,YWHAH"
TCGA.AA.A00D.01A	22	30421577	30822674	46	0.514	SMALL-GAIN	NONFOCAL	11	"CCDC157,GATSL3,HORMAD2,LIF,MTFP1,MTMR3,OSM,RNF215,SEC14L2,SF3A1,TBC1D10A"
TCGA.AA.A00D.01A	22	31583033	32923847	159	0.4513	SMALL-GAIN	NONFOCAL	21	"BPIFC,C22orf24,C22orf42,DEPDC5,DRG1,EIF4ENIF1,FBXO7,LIMK2,PATZ1,PIK3IP1,PISD,PRR14L,RFPL2,RFPL3,RNF185,RTCB,SFI1,SLC5A1,SLC5A4,SYN3,YWHAH"
TCGA.AA.A00A.01A	22	32352089	36678685	193	0.5037	SMALL-GAIN	NONFOCAL	27	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C22orf42,FBXO7,HMGXB4,HMOX1,ISX,LARGE,MB,MCM5,MYH9,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SLC5A1,SLC5A4,SYN3,TIMP3,TOM1,YWHAH"
TCGA.AA.A010.01A	22	32439242	37333402	309	0.4093	SMALL-GAIN	NONFOCAL	34	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,BPIFC,C22orf42,CACNG2,CSF2RB,EIF3D,FBXO7,FOXRED2,HMGXB4,HMOX1,IFT27,ISX,LARGE,MB,MCM5,MYH9,NCF4,PVALB,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SLC5A1,SLC5A4,SYN3,TIMP3,TOM1,TXN2"
TCGA.AA.A00L.01A	22	32870951	36661158	127	0.4626	SMALL-GAIN	NONFOCAL	18	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,FBXO7,HMGXB4,HMOX1,ISX,LARGE,MB,MCM5,RASD2,RBFOX2,SYN3,TIMP3,TOM1"
TCGA.CA.5797	22	35287625	36707199	504	0.4318	SMALL-GAIN	NONFOCAL	15	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,HMGXB4,HMOX1,ISX,MB,MCM5,MYH9,RASD2,RBFOX2,TOM1"
TCGA.AA.3850	22	35395125	51186227	5116	0.37855	SMALL-GAIN	NONFOCAL	220	Too-Many
TCGA.AA.3941	22	35402954	37977480	872	0.4521	SMALL-GAIN	NONFOCAL	38	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,C1QTNF6,CACNG2,CARD10,CDC42EP1,CSF2RB,CYTH4,EIF3D,ELFN2,FOXRED2,HMGXB4,HMOX1,IFT27,IL2RB,ISX,KCTD17,LGALS2,MB,MCM5,MFNG,MPST,MYH9,NCF4,PVALB,RAC2,RASD2,RBFOX2,SSTR3,TEX33,TMPRSS6,TOM1,TST,TXN2"
TCGA.AA.A00N.01A	22	35695846	36655673	77	0.4434	SMALL-GAIN	NONFOCAL	12	"APOL1,APOL2,APOL3,APOL4,APOL5,APOL6,HMOX1,MB,MCM5,RASD2,RBFOX2,TOM1"
TCGA.AA.A00A.01A	22	36705297	51216317	1282	0.3914	SMALL-GAIN	NONFOCAL	207	Too-Many
TCGA.RU.A8FL	22	37794621	38719961	185	0.4052	SMALL-GAIN	NONFOCAL	28	"ANKRD54,BAIAP2L2,C22orf23,CARD10,CDC42EP1,CSNK1E,EIF3L,ELFN2,GALR3,GCAT,GGA1,H1F0,LGALS1,LGALS2,LOC400927-CSNK1E,MAFF,MFNG,MICALL1,NOL12,PDXP,PICK1,PLA2G6,POLR2F,SH3BP1,SLC16A8,SOX10,TMEM184B,TRIOBP"
TCGA.AG.3891.01A	22	37891460	38463658	119	0.4812	SMALL-GAIN	NONFOCAL	19	"ANKRD54,C22orf23,CARD10,CDC42EP1,EIF3L,GALR3,GCAT,GGA1,H1F0,LGALS1,LGALS2,MICALL1,NOL12,PDXP,PICK1,POLR2F,SH3BP1,SOX10,TRIOBP"
TCGA.AG.3906.01A	22	38040580	38494356	91	0.567	SMALL-GAIN	NONFOCAL	17	"ANKRD54,BAIAP2L2,C22orf23,EIF3L,GALR3,GCAT,H1F0,LGALS1,MICALL1,NOL12,PDXP,PICK1,POLR2F,SH3BP1,SLC16A8,SOX10,TRIOBP"
TCGA.AA.A00L.01A	22	38247277	50599075	1047	0.4818	SMALL-GAIN	NONFOCAL	146	Too-Many
TCGA.AA.3941	22	38339880	39756984	298	0.5408	SMALL-GAIN	NONFOCAL	36	"APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,BAIAP2L2,C22orf23,CBX6,CBX7,CBY1,CSNK1E,DDX17,DMC1,DNAL4,FAM227A,GTPBP1,JOSD1,KCNJ4,KDELR3,LOC400927-CSNK1E,MAFF,NPTXR,PDGFB,PICK1,PLA2G6,POLR2F,RPL3,SLC16A8,SOX10,SUN2,SYNGR1,TMEM184B,TOMM22"
TCGA.AA.A010.01A	22	40521747	41564405	132	0.5078	SMALL-GAIN	NONFOCAL	11	"ADSL,DNAJB7,EP300,MCHR1,MKL1,RBX1,SGSM3,SLC25A17,ST13,TNRC6B,XPNPEP3"
TCGA.DM.A1D7	22	41081488	41958861	128	0.5312	SMALL-GAIN	NONFOCAL	16	"ACO2,CHADL,CSDC2,DNAJB7,EP300,L3MBTL2,PHF5A,POLR3H,RANGAP1,RBX1,SLC25A17,ST13,TEF,TOB2,XPNPEP3,ZC3H7B"
TCGA.AA.A00D.01A	22	41166800	41997051	156	0.4645	SMALL-GAIN	NONFOCAL	18	"ACO2,CHADL,CSDC2,DESI1,DNAJB7,EP300,L3MBTL2,PHF5A,PMM1,POLR3H,RANGAP1,RBX1,SLC25A17,ST13,TEF,TOB2,XPNPEP3,ZC3H7B"
TCGA.AA.A00D.01A	22	42059577	44341983	226	0.4114	SMALL-GAIN	NONFOCAL	37	"A4GALT,ARFGAP3,ATP5L2,BIK,C22orf46,CCDC134,CENPM,CYB5R3,CYP2D6,EFCAB6,FAM109B,MCAT,MEI1,MPPED1,NAGA,NDUFA6,NFAM1,NHP2L1,PACSIN2,PNPLA3,PNPLA5,POLDIP3,RRP7A,SCUBE1,SEPT3,SERHL2,SHISA8,SMDT1,SREBF2,SULT4A1,TCF20,TNFRSF13C,TSPO,TTLL1,TTLL12,WBP2NL,XRCC6"
TCGA.AA.A00D.01A	22	46792475	50512608	75	0.464	SMALL-GAIN	NONFOCAL	13	"ALG12,BRD1,C22orf34,CELSR1,CERK,CRELD2,FAM19A5,GRAMD4,IL17REL,MLC1,PIM3,TBC1D22A,ZBED4"
TCGA.AA.3495	22	49589085	51186227	472	0.3898	SMALL-GAIN	NONFOCAL	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AM.5820	22	49910285	51186227	278	0.4558	SMALL-GAIN	NONFOCAL	35	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.A00D.01A	22	50599756	51182437	84	0.3834	SMALL-GAIN	NONFOCAL	27	"ACR,ADM2,ARSA,CHKB,CPT1B,DENND6B,HDAC10,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MOV10L1,NCAPH2,ODF3B,PANX2,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP"
TCGA.AG.3906.01A	22	50897637	51011921	37	0.4666	SMALL-GAIN	NONFOCAL	11	"ADM2,CPT1B,KLHDC7B,LMF2,MIOX,NCAPH2,ODF3B,SBF1,SCO2,SYCE3,TYMP"
TCGA.AA.A00L.01A	23	200803	2688515	67	0.425	SMALL-GAIN	NONFOCAL	16	"AKAP17A,ASMT,ASMTL,CD99,CRLF2,CSF2RA,DHRSX,GTPBP6,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6,XG,ZBED1"
TCGA.AA.3862.01A	23	200803	12838736	364	0.5281	SMALL-GAIN	NONFOCAL	47	"AKAP17A,AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CLCN4,CLDN34,CRLF2,CSF2RA,DHRSX,FAM9A,FAM9B,FRMPD4,GPR143,GTPBP6,GYG2,HCCS,HDHD1,IL3RA,MID1,MSL3,MXRA5,NLGN4X,P2RY8,PLCXD1,PNPLA4,PPP2R3B,PRKX,PRPS2,SHOX,SHROOM2,SLC25A6,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1"
TCGA.AA.A00Q.01A	23	200803	12937143	326	0.6137	SMALL-GAIN	NONFOCAL	49	"AKAP17A,AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASMT,ASMTL,CD99,CLCN4,CLDN34,CRLF2,CSF2RA,DHRSX,FAM9A,FAM9B,FRMPD4,GPR143,GTPBP6,GYG2,HCCS,HDHD1,IL3RA,MID1,MSL3,MXRA5,NLGN4X,P2RY8,PLCXD1,PNPLA4,PPP2R3B,PRKX,PRPS2,SHOX,SHROOM2,SLC25A6,STS,TBL1X,TLR7,TLR8,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZBED1"
TCGA.AA.A00A.01A	23	200803	24861636	991	0.4795	SMALL-GAIN	NONFOCAL	121	Too-Many
TCGA.AG.A032.01A	23	200803	57935244	2349	0.622	SMALL-GAIN	NONFOCAL	329	Too-Many
TCGA.AY.A54L.01A	23	200803	83591747	3488	0.4312	SMALL-GAIN	NONFOCAL	428	Too-Many
TCGA.DM.A282.01A	23	200803	114398190	4399	0.4295	SMALL-GAIN	NONFOCAL	553	Too-Many
TCGA.AA.A01F.01A	23	200803	155239443	5220	0.438	SMALL-GAIN	NONFOCAL	825	Too-Many
TCGA.AA.A02K.01A	23	200804	48935276	2008	0.4989	SMALL-GAIN	NONFOCAL	233	Too-Many
TCGA.AA.3939.01A	23	2658768	79937449	3272	0.4859	SMALL-GAIN	NONFOCAL	408	Too-Many
TCGA.AG.4009.01A	23	2688515	11318628	219	0.4661	SMALL-GAIN	NONFOCAL	29	"AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HCCS,HDHD1,MID1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.DC.5869	23	2703632	7059035	1713	0.4893	SMALL-GAIN	NONFOCAL	11	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,VCX3A,XG"
TCGA.DY.A1DD	23	2703632	7234592	1772	0.465	SMALL-GAIN	NONFOCAL	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.AF.5654	23	2703632	7276561	1764	0.4319	SMALL-GAIN	NONFOCAL	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.AG.A026	23	2703632	7321132	1761	0.5949	SMALL-GAIN	NONFOCAL	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.EI.6512	23	2703632	10730450	3048	0.5207	SMALL-GAIN	NONFOCAL	26	"ANOS1,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HDHD1,MID1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.3L.AA1B	23	2703632	16141970	4759	0.534	SMALL-GAIN	NONFOCAL	59	"ACE2,AMELX,ANOS1,AP1S2,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ASB11,ASB9,ATXN3L,BMX,CA5B,CLCN4,CLDN34,EGFL6,FAM9A,FAM9B,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GRPR,GYG2,HCCS,HDHD1,MID1,MOSPD2,MSL3,MXRA5,NLGN4X,OFD1,PIGA,PIR,PNPLA4,PRKX,PRPS2,RAB9A,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,VCX,VCX2,VCX3A,VCX3B,WWC3,XG,ZRSR2"
TCGA.NH.A8F7	23	2703632	25798424	7316	0.3995	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AG.A01Y	23	2703632	25897543	7353	0.5436	SMALL-GAIN	NONFOCAL	107	Too-Many
TCGA.AG.4022	23	2703632	26957605	7660	0.559	SMALL-GAIN	NONFOCAL	110	Too-Many
TCGA.AD.6899	23	2703632	64712353	14541	0.6713	SMALL-GAIN	NONFOCAL	321	Too-Many
TCGA.DC.6155	23	2703632	76129826	16632	0.5842	SMALL-GAIN	NONFOCAL	390	Too-Many
TCGA.F5.6810	23	2703632	78609266	16886	0.4299	SMALL-GAIN	NONFOCAL	403	Too-Many
TCGA.NH.A50U	23	2703632	81351885	17235	0.6676	SMALL-GAIN	NONFOCAL	409	Too-Many
TCGA.G5.6235	23	2703632	88444083	19366	0.5392	SMALL-GAIN	NONFOCAL	421	Too-Many
TCGA.AA.3488	23	2703632	88468320	19282	0.3792	SMALL-GAIN	NONFOCAL	421	Too-Many
TCGA.A6.6137	23	2703632	91551620	19841	0.6092	SMALL-GAIN	NONFOCAL	424	Too-Many
TCGA.AA.3956	23	2703632	119866400	25877	0.6091	SMALL-GAIN	NONFOCAL	575	Too-Many
TCGA.AA.3984	23	2703632	132142466	29428	0.4205	SMALL-GAIN	NONFOCAL	624	Too-Many
TCGA.DC.6154	23	2703632	141112747	31507	0.5806	SMALL-GAIN	NONFOCAL	683	Too-Many
TCGA.G4.6311	23	2703632	143486048	32194	0.509	SMALL-GAIN	NONFOCAL	689	Too-Many
TCGA.AA.3971	23	2703632	148715675	33716	0.625	SMALL-GAIN	NONFOCAL	704	Too-Many
TCGA.AA.3530	23	2703632	151382468	34487	0.5825	SMALL-GAIN	NONFOCAL	724	Too-Many
TCGA.A6.2675	23	2703632	154925044	34255	0.5133	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.A6.2682	23	2703632	154925044	33888	0.5126	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.A6.4105	23	2703632	154925044	35263	0.6107	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.A6.5657	23	2703632	154925044	35214	0.4931	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.A6.6782	23	2703632	154925044	34661	0.6674	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3560	23	2703632	154925044	35653	0.584	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3685	23	2703632	154925044	35554	0.5075	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.3976	23	2703632	154925044	35063	0.3987	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AD.6890	23	2703632	154925044	35376	0.3924	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AD.6901	23	2703632	154925044	34763	0.4172	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AD.6963	23	2703632	154925044	35222	0.4808	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AF.3911	23	2703632	154925044	35341	0.38	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AF.6672	23	2703632	154925044	35198	0.4599	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AG.3574	23	2703632	154925044	35655	0.4999	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AG.3602	23	2703632	154925044	35472	0.4649	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AG.3742	23	2703632	154925044	35328	0.4778	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AG.3878	23	2703632	154925044	35476	0.5584	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AG.3882	23	2703632	154925044	35660	0.4779	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AG.3890	23	2703632	154925044	35130	0.5015	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AG.3902	23	2703632	154925044	35265	0.6714	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AH.6643	23	2703632	154925044	35144	0.5248	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AH.6644	23	2703632	154925044	35123	0.4115	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AZ.6600	23	2703632	154925044	35152	0.3884	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AZ.6603	23	2703632	154925044	35540	0.3911	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AZ.6608	23	2703632	154925044	35495	0.3934	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CA.6716	23	2703632	154925044	35326	0.6535	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CI.6621	23	2703632	154925044	35188	0.4006	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CK.5913	23	2703632	154925044	35616	0.3787	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CM.4752	23	2703632	154925044	35251	0.5586	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CM.5868	23	2703632	154925044	35604	0.5002	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CM.6163	23	2703632	154925044	34887	0.4253	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CM.6166	23	2703632	154925044	35633	0.4403	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CM.6676	23	2703632	154925044	35115	0.4779	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.CM.6679	23	2703632	154925044	34870	0.57625	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.D5.5537	23	2703632	154925044	35054	0.4732	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.D5.6922	23	2703632	154925044	35310	0.4068	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.D5.6926	23	2703632	154925044	35185	0.584	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.D5.7000	23	2703632	154925044	35481	0.3788	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.DC.6157	23	2703632	154925044	34702	0.59	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.DM.A28E	23	2703632	154925044	35494	0.5198	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.DY.A1DG	23	2703632	154925044	35294	0.4603	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.F4.6808	23	2703632	154925044	35545	0.4124	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.F5.6702	23	2703632	154925044	34471	0.4476	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.F5.6814	23	2703632	154925044	35399	0.3846	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.G4.6310	23	2703632	154925044	35277	0.4306	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.G4.6317	23	2703632	154925044	35629	0.6078	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.G4.6625	23	2703632	154925044	35625	0.403	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.G5.6233	23	2703632	154925044	35400	0.5127	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.RU.A8FL	23	2703632	154925044	34831	0.6228	SMALL-GAIN	NONFOCAL	808	Too-Many
TCGA.AA.A01I.01A	23	2936528	69496243	2433	0.5827	SMALL-GAIN	NONFOCAL	337	Too-Many
TCGA.DY.A1H8	23	3935079	55734463	13771	0.4803	SMALL-GAIN	NONFOCAL	297	Too-Many
TCGA.D5.5538	23	4004829	58438009	14107	0.4388	SMALL-GAIN	NONFOCAL	306	Too-Many
TCGA.QL.A97D	23	6721721	46598738	11350	0.4817	SMALL-GAIN	NONFOCAL	157	Too-Many
TCGA.D5.6533	23	6809255	141305555	29964	0.5489	SMALL-GAIN	NONFOCAL	674	Too-Many
TCGA.DC.6682	23	7061641	154925044	33579	0.5941	SMALL-GAIN	NONFOCAL	798	Too-Many
TCGA.DC.5869	23	7106205	154925044	33741	0.5104	SMALL-GAIN	NONFOCAL	797	Too-Many
TCGA.F4.6459	23	7117287	34039587	8177	0.5607	SMALL-GAIN	NONFOCAL	113	Too-Many
TCGA.A6.6650	23	7150496	58065918	11620	0.5362	SMALL-GAIN	NONFOCAL	303	Too-Many
TCGA.AD.6965	23	7290561	100543989	19962	0.4048	SMALL-GAIN	NONFOCAL	430	Too-Many
TCGA.AF.5654	23	7426906	154925044	33662	0.4368	SMALL-GAIN	NONFOCAL	796	Too-Many
TCGA.DM.A0X9	23	7685261	95302288	18892	0.4335	SMALL-GAIN	NONFOCAL	414	Too-Many
TCGA.AA.3812	23	7708040	13047460	1985	0.475	SMALL-GAIN	NONFOCAL	23	"AMELX,ANOS1,ARHGAP6,CLCN4,CLDN34,FAM9A,FAM9B,FRMPD4,GPR143,HCCS,MID1,MSL3,PNPLA4,PRPS2,SHROOM2,TBL1X,TLR7,TLR8,TMSB4X,VCX,VCX2,VCX3B,WWC3"
TCGA.A6.3810.01A	23	7811252	152719801	5534	0.4304	SMALL-GAIN	NONFOCAL	731	Too-Many
TCGA.DC.4745	23	8846810	13470095	1712	0.398	SMALL-GAIN	NONFOCAL	19	"AMELX,ARHGAP6,ATXN3L,CLCN4,CLDN34,FAM9B,FAM9C,FRMPD4,GPR143,HCCS,MID1,MSL3,PRPS2,SHROOM2,TBL1X,TLR7,TLR8,TMSB4X,WWC3"
TCGA.AG.A026	23	10204811	154925044	32004	0.6035	SMALL-GAIN	NONFOCAL	784	Too-Many
TCGA.EI.6512	23	10806300	154925044	32603	0.5305	SMALL-GAIN	NONFOCAL	783	Too-Many
TCGA.AG.4009.01A	23	11790691	15817934	211	0.5067	SMALL-GAIN	NONFOCAL	28	"ACE2,ASB11,ASB9,ATXN3L,BMX,CA5B,EGFL6,FAM9C,FANCB,FIGF,FRMPD4,GEMIN8,GLRA2,GPM6B,MOSPD2,MSL3,OFD1,PIGA,PIR,PRPS2,RAB9A,TCEANC,TLR7,TLR8,TMEM27,TMSB4X,TRAPPC2,ZRSR2"
TCGA.AA.3812	23	13063219	154925044	31765	0.4887	SMALL-GAIN	NONFOCAL	772	Too-Many
TCGA.AZ.4684.01A	23	13834897	15646052	106	0.5558	SMALL-GAIN	NONFOCAL	13	"ACE2,ASB11,ASB9,BMX,FANCB,FIGF,GEMIN8,GLRA2,GPM6B,MOSPD2,PIGA,PIR,TMEM27"
TCGA.DC.4745	23	16540770	154925044	30689	0.4116	SMALL-GAIN	NONFOCAL	748	Too-Many
TCGA.DY.A1DD	23	16950940	21060703	775	0.4876	SMALL-GAIN	NONFOCAL	18	"ADGRG2,BEND2,CDKL5,CXorf23,EIF1AX,MAP3K15,MAP7D2,NHS,PDHA1,PHKA2,PPEF1,RAI2,REPS2,RPS6KA3,RS1,SCML1,SCML2,SH3KBP1"
TCGA.AG.4009.01A	23	17024296	24690642	424	0.481	SMALL-GAIN	NONFOCAL	40	"ACOT9,ADGRG2,APOO,BEND2,CDKL5,CNKSR2,CXorf23,CXorf58,DDX53,EIF1AX,EIF2S3,KLHL15,KLHL34,MAP3K15,MAP7D2,MBTPS2,NHS,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,PPEF1,PRDX4,PTCHD1,RAI2,REPS2,RPS6KA3,RS1,SAT1,SCML1,SCML2,SH3KBP1,SMPX,SMS,SUPT20HL1,SUPT20HL2,YY2,ZFX,ZNF645"
TCGA.3L.AA1B	23	17043008	63149826	9414	0.5529	SMALL-GAIN	NONFOCAL	251	Too-Many
TCGA.AA.3862.01A	23	20146328	23722759	121	0.6223	SMALL-GAIN	NONFOCAL	14	"ACOT9,CNKSR2,DDX53,EIF1AX,KLHL34,MBTPS2,PHEX,PRDX4,PTCHD1,RPS6KA3,SMPX,SMS,YY2,ZNF645"
TCGA.AA.3862.01A	23	24483523	47920148	766	0.6323	SMALL-GAIN	NONFOCAL	85	"ARAF,ARX,ATP6AP2,BCOR,CASK,CDK16,CFAP47,CFP,CHST7,CXorf21,CXorf36,CXorf38,CYBB,DCAF8L1,DCAF8L2,DDX3X,DMD,DUSP21,DYNLT3,EFHC2,ELK1,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,FUNDC1,GK,GPR34,GPR82,HYPM,IL1RAPL1,JADE3,KDM6A,KRBOX4,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NDUFB11,NR0B1,NYX,OTC,PCYT1B,PDK3,POLA1,PRRG1,RBM10,RGN,RP2,RPGR,SLC9A7,SPACA5,SPACA5B,SRPX,SYN1,SYTL5,TAB3,TIMP1,TMEM47,TSPAN7,UBA1,USP11,USP9X,UXT,XK,ZNF157,ZNF182,ZNF41,ZNF630,ZNF674,ZNF81"
TCGA.AA.A00D.01A	23	24766947	30635540	45	0.5592	SMALL-GAIN	NONFOCAL	15	"ARX,CXorf21,DCAF8L1,DCAF8L2,IL1RAPL1,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,POLA1"
TCGA.NH.A8F7	23	25811098	150876754	27426	0.3854	SMALL-GAIN	NONFOCAL	609	Too-Many
TCGA.AG.4022	23	27065620	154925044	27967	0.5309	SMALL-GAIN	NONFOCAL	698	Too-Many
TCGA.EI.7002	23	28634462	88444551	11299	0.4587	SMALL-GAIN	NONFOCAL	308	Too-Many
TCGA.AA.A00A.01A	23	28807405	49067413	781	0.3909	SMALL-GAIN	NONFOCAL	111	Too-Many
TCGA.AA.A00D.01A	23	30738072	38150590	188	0.4905	SMALL-GAIN	NONFOCAL	20	"CFAP47,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,HYPM,LANCL3,MAGEB16,PRRG1,RPGR,SRPX,SYTL5,TAB3,TMEM47,XK"
TCGA.CK.5914.01A	23	30849494	38169818	221	0.5843	SMALL-GAIN	NONFOCAL	19	"CFAP47,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,HYPM,LANCL3,MAGEB16,PRRG1,RPGR,SRPX,SYTL5,TAB3,TMEM47,XK"
TCGA.AA.A01C.01A	23	30864040	38013663	171	0.5885	SMALL-GAIN	NONFOCAL	18	"CFAP47,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,HYPM,LANCL3,MAGEB16,PRRG1,SRPX,SYTL5,TAB3,TMEM47,XK"
TCGA.A6.3808.01A	23	30864635	38135808	195	0.4656	SMALL-GAIN	NONFOCAL	19	"CFAP47,CYBB,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,HYPM,LANCL3,MAGEB16,PRRG1,RPGR,SRPX,SYTL5,TAB3,TMEM47,XK"
TCGA.AA.A02H.01A	23	30864635	46521414	449	0.5476	SMALL-GAIN	NONFOCAL	46	"ATP6AP2,BCOR,CASK,CFAP47,CHST7,CXorf36,CXorf38,CYBB,DDX3X,DMD,DUSP21,DYNLT3,EFHC2,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,FUNDC1,GPR34,GPR82,HYPM,KDM6A,KRBOX4,LANCL3,MAGEB16,MAOA,MAOB,MED14,MED14OS,MID1IP1,MPC1L,NDP,NYX,OTC,PRRG1,RPGR,SLC9A7,SRPX,SYTL5,TAB3,TMEM47,TSPAN7,USP9X,XK,ZNF674"
TCGA.F4.6459	23	34073424	56602591	4383	0.4676	SMALL-GAIN	NONFOCAL	184	Too-Many
TCGA.AA.3941	23	39305459	41691356	547	0.4757	SMALL-GAIN	NONFOCAL	12	"ATP6AP2,BCOR,CASK,CXorf38,DDX3X,GPR34,GPR82,MED14,MED14OS,MPC1L,NYX,USP9X"
TCGA.AA.A00D.01A	23	41206831	46913543	135	0.6519	SMALL-GAIN	NONFOCAL	19	"CASK,CHST7,CXorf36,DDX3X,DUSP21,EFHC2,FUNDC1,GPR34,GPR82,JADE3,KDM6A,KRBOX4,MAOA,MAOB,NDP,NYX,RP2,SLC9A7,ZNF674"
TCGA.AA.3697	23	43130900	154925044	23190	0.45	SMALL-GAIN	NONFOCAL	653	Too-Many
TCGA.AG.4009.01A	23	44935930	47068838	86	0.463	SMALL-GAIN	NONFOCAL	12	"CHST7,CXorf36,JADE3,KDM6A,KRBOX4,NDUFB11,RBM10,RGN,RP2,SLC9A7,UBA1,ZNF674"
TCGA.CI.6623	23	45069623	154925044	22721	0.4683	SMALL-GAIN	NONFOCAL	645	Too-Many
TCGA.AA.3941	23	46169915	47745835	288	0.4326	SMALL-GAIN	NONFOCAL	21	"ARAF,CDK16,CFP,CHST7,ELK1,JADE3,KRBOX4,NDUFB11,RBM10,RGN,RP2,SLC9A7,SYN1,TIMP1,UBA1,USP11,UXT,ZNF157,ZNF41,ZNF674,ZNF81"
TCGA.QL.A97D	23	46624280	56494717	1346	0.4698	SMALL-GAIN	NONFOCAL	140	Too-Many
TCGA.AG.A00C.01A	23	46917542	47518181	100	0.6416	SMALL-GAIN	NONFOCAL	15	"ARAF,CDK16,CFP,ELK1,JADE3,NDUFB11,RBM10,RGN,SYN1,TIMP1,UBA1,USP11,UXT,ZNF157,ZNF41"
TCGA.AA.A00Q.01A	23	47001719	47847861	108	0.4306	SMALL-GAIN	NONFOCAL	15	"ARAF,CDK16,CFP,ELK1,NDUFB11,RBM10,SYN1,TIMP1,UBA1,USP11,UXT,ZNF157,ZNF182,ZNF41,ZNF81"
TCGA.AA.A00D.01A	23	47001719	49063429	300	0.6466	SMALL-GAIN	NONFOCAL	54	"ARAF,CACNA1F,CCDC120,CDK16,CFP,EBP,ELK1,ERAS,FTSJ1,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,NDUFB11,OTUD5,PCSK1N,PIM2,PLP2,PORCN,PQBP1,PRAF2,PRICKLE3,RBM10,RBM3,SLC35A2,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYN1,SYP,TBC1D25,TFE3,TIMM17B,TIMP1,UBA1,USP11,UXT,WAS,WDR13,WDR45,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.AG.A01N.01A	23	47058175	49138385	350	0.4649	SMALL-GAIN	NONFOCAL	55	"ARAF,CACNA1F,CCDC120,CCDC22,CDK16,CFP,EBP,ELK1,ERAS,FOXP3,FTSJ1,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,OTUD5,PCSK1N,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM3,SLC35A2,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYN1,SYP,TBC1D25,TFE3,TIMM17B,TIMP1,UBA1,USP11,UXT,WAS,WDR13,WDR45,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.DY.A1DD	23	47314038	154925044	22586	0.4787	SMALL-GAIN	NONFOCAL	632	Too-Many
TCGA.AA.3844	23	47768581	49444565	190	0.615	SMALL-GAIN	NONFOCAL	66	"CACNA1F,CCDC120,CCDC22,EBP,ERAS,FOXP3,FTSJ1,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,OTUD5,PCSK1N,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM3,SLC35A2,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYP,TBC1D25,TFE3,TIMM17B,WAS,WDR13,WDR45,ZNF182,ZNF630,ZNF81"
TCGA.AA.3941	23	47768581	49461559	196	0.4227	SMALL-GAIN	NONFOCAL	67	"CACNA1F,CCDC120,CCDC22,EBP,ERAS,FOXP3,FTSJ1,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,OTUD5,PAGE1,PCSK1N,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM3,SLC35A2,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYP,TBC1D25,TFE3,TIMM17B,WAS,WDR13,WDR45,ZNF182,ZNF630,ZNF81"
TCGA.AG.4009.01A	23	48047015	48463189	63	0.6655	SMALL-GAIN	NONFOCAL	12	"EBP,FTSJ1,PORCN,RBM3,SLC38A5,SSX1,SSX3,SSX4,SSX4B,SSX5,TBC1D25,WDR13"
TCGA.AY.6196	23	48210104	132318356	15524	0.3866	SMALL-GAIN	NONFOCAL	435	Too-Many
TCGA.A6.3808.01A	23	48317268	48687502	80	0.4448	SMALL-GAIN	NONFOCAL	13	"EBP,ERAS,FTSJ1,GATA1,GLOD5,HDAC6,PORCN,RBM3,SLC38A5,SUV39H1,TBC1D25,WAS,WDR13"
TCGA.AA.3862.01A	23	48317870	67936155	891	0.5709	SMALL-GAIN	NONFOCAL	137	Too-Many
TCGA.AA.A00Q.01A	23	48318988	54099424	502	0.5139	SMALL-GAIN	NONFOCAL	93	"AKAP4,BMP15,CACNA1F,CCDC120,CCDC22,CCNB3,CLCN5,CXorf67,DGKK,EBP,ERAS,FAM120C,FAM156A,FAM156B,FOXP3,FTSJ1,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GATA1,GLOD5,GPKOW,GPR173,GRIPAP1,GSPT2,HDAC6,HSD17B10,HUWE1,IQSEC2,KCND1,KDM5C,MAGED1,MAGED4,MAGED4B,MAGIX,NUDT10,NUDT11,OTUD5,PAGE1,PAGE4,PCSK1N,PHF8,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM3,RIBC1,SHROOM4,SLC35A2,SLC38A5,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,SUV39H1,SYP,TBC1D25,TFE3,TIMM17B,TSPYL2,USP27X,WAS,WDR13,WDR45,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AG.A00C.01A	23	48341309	49086652	185	0.6776	SMALL-GAIN	NONFOCAL	30	"CACNA1F,CCDC120,EBP,ERAS,FTSJ1,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,OTUD5,PCSK1N,PIM2,PLP2,PORCN,PQBP1,PRAF2,PRICKLE3,RBM3,SLC35A2,SUV39H1,SYP,TBC1D25,TFE3,TIMM17B,WAS,WDR13,WDR45"
TCGA.A6.3808.01A	23	49075769	51637756	140	0.4237	SMALL-GAIN	NONFOCAL	40	"AKAP4,BMP15,CACNA1F,CCDC22,CCNB3,CLCN5,CXorf67,DGKK,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GSPT2,MAGED1,NUDT10,NUDT11,PAGE1,PAGE4,PPP1R3F,SHROOM4,USP27X"
TCGA.AA.A00D.01A	23	49076043	54800492	371	0.6718	SMALL-GAIN	NONFOCAL	68	"AKAP4,BMP15,CACNA1F,CCDC22,CCNB3,CLCN5,CXorf67,DGKK,FAM120C,FAM156A,FAM156B,FGD1,FOXP3,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,MAGED1,MAGED4,MAGED4B,NUDT10,NUDT11,PAGE1,PAGE4,PHF8,PPP1R3F,RIBC1,SHROOM4,SMC1A,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,TSR2,USP27X,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AA.A00A.01A	23	49082344	114423986	1975	0.4235	SMALL-GAIN	NONFOCAL	316	Too-Many
TCGA.AG.A01J.01A	23	49138385	50163354	80	0.5716	SMALL-GAIN	NONFOCAL	30	"AKAP4,CCNB3,CLCN5,DGKK,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,PAGE1,PAGE4,PPP1R3F,USP27X"
TCGA.AG.4009.01A	23	49138385	50659396	96	0.4935	SMALL-GAIN	NONFOCAL	32	"AKAP4,BMP15,CCNB3,CLCN5,DGKK,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,PAGE1,PAGE4,PPP1R3F,SHROOM4,USP27X"
TCGA.AG.A01N.01A	23	51079010	57318892	375	0.6686	SMALL-GAIN	NONFOCAL	54	"ALAS2,APEX2,CXorf67,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTRNR2L10,NUDT10,NUDT11,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AG.4009.01A	23	51486686	53116931	36	0.4124	SMALL-GAIN	NONFOCAL	17	"FAM156A,FAM156B,GPR173,GSPT2,MAGED1,MAGED4,MAGED4B,SPANXN5,SSX2,SSX2B,SSX7,TSPYL2,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5"
TCGA.AA.A004.01A	23	53579232	155234935	3359	0.4746	SMALL-GAIN	NONFOCAL	527	Too-Many
TCGA.AG.4009.01A	23	54224725	55479496	136	0.5099	SMALL-GAIN	NONFOCAL	17	"ALAS2,APEX2,FAM104B,FGD1,GNL3L,ITIH6,MAGED2,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,TRO,TSR2,WNK3"
TCGA.AA.A00Q.01A	23	54472492	69510311	371	0.6237	SMALL-GAIN	NONFOCAL	56	"ALAS2,AMER1,APEX2,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAAH2,FAM104B,FAM155B,FGD1,FOXR2,GNL3L,HEPH,IGBP1,ITIH6,KIF4A,KLF8,LAS1L,MAGED2,MAGEH1,MSN,MTMR8,MTRNR2L10,OPHN1,OTUD6A,P2RY4,PAGE2,PAGE2B,PAGE3,PAGE5,PDZD11,PFKFB1,PJA1,RAB41,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,TRO,UBQLN2,USP51,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.A01W.01A	23	55119145	62486698	61	0.3969	SMALL-GAIN	NONFOCAL	17	"FAAH2,FAM104B,FOXR2,KLF8,MAGEH1,MTRNR2L10,PAGE2,PAGE3,PAGE5,RRAGB,SPIN2A,SPIN2B,SPIN3,UBQLN2,USP51,ZXDA,ZXDB"
TCGA.AZ.4684.01A	23	55170164	64141655	90	0.4786	SMALL-GAIN	NONFOCAL	22	"AMER1,ARHGEF9,ASB12,FAAH2,FAM104B,FOXR2,KLF8,MAGEH1,MTMR8,MTRNR2L10,PAGE3,PAGE5,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,UBQLN2,USP51,ZC4H2,ZXDA,ZXDB"
TCGA.AZ.4614	23	55255712	58438009	482	0.4278	SMALL-GAIN	NONFOCAL	13	"FAAH2,FOXR2,KLF8,MAGEH1,PAGE3,RRAGB,SPIN2A,SPIN2B,SPIN3,UBQLN2,USP51,ZXDA,ZXDB"
TCGA.AA.A00D.01A	23	56291596	69478339	214	0.446	SMALL-GAIN	NONFOCAL	34	"AMER1,AR,ARHGEF9,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAAH2,FAM155B,HEPH,IGBP1,KLF8,LAS1L,MSN,MTMR8,OPHN1,OTUD6A,P2RY4,PJA1,SPIN2A,SPIN2B,SPIN3,SPIN4,STARD8,UBQLN2,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.A01J.01A	23	57336979	69478339	208	0.5002	SMALL-GAIN	NONFOCAL	29	"AMER1,AR,ARHGEF9,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAAH2,FAM155B,HEPH,IGBP1,LAS1L,MSN,MTMR8,OPHN1,OTUD6A,P2RY4,PJA1,SPIN4,STARD8,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AZ.6601	23	57529065	88444551	4976	0.5814	SMALL-GAIN	NONFOCAL	109	Too-Many
TCGA.AZ.6606	23	58438009	111555590	9321	0.4868	SMALL-GAIN	NONFOCAL	219	Too-Many
TCGA.AF.2692	23	61948488	118338864	11417	0.5347	SMALL-GAIN	NONFOCAL	237	Too-Many
TCGA.AG.4009.01A	23	62569902	69561598	230	0.5146	SMALL-GAIN	NONFOCAL	30	"AMER1,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAM155B,HEPH,IGBP1,KIF4A,LAS1L,MSN,MTMR8,OPHN1,OTUD6A,P2RY4,PDZD11,PJA1,RAB41,SPIN4,STARD8,VSIG4,YIPF6,ZC3H12B,ZC4H2"
TCGA.D5.5538	23	63442134	154925044	20957	0.4308	SMALL-GAIN	NONFOCAL	491	Too-Many
TCGA.AD.6899	23	65439463	154925044	20367	0.6682	SMALL-GAIN	NONFOCAL	484	Too-Many
TCGA.AF.3914.01A	23	65824841	69652140	164	0.4961	SMALL-GAIN	NONFOCAL	20	"AR,ARR3,AWAT1,AWAT2,DGAT2L6,EDA,EDA2R,EFNB1,FAM155B,GDPD2,IGBP1,KIF4A,OPHN1,OTUD6A,P2RY4,PDZD11,PJA1,RAB41,STARD8,YIPF6"
TCGA.3L.AA1B	23	67962350	94568447	5133	0.5565	SMALL-GAIN	NONFOCAL	96	"ABCB7,ACRC,APOOL,ARR3,ATP7A,ATRX,AWAT1,AWAT2,BRWD3,CDX4,CHIC1,CHM,CITED1,COX7B,CPXCR1,CXCR3,CXorf49,CXorf49B,CXorf65,CYLC1,CYSLTR1,DACH2,DGAT2L6,DLG3,DMRTC1,DMRTC1B,EDA,EFNB1,ERCC6L,FAM133A,FAM155B,FAM46D,FGF16,FLJ44635,FOXO4,GDPD2,GJB1,GPR174,HDAC8,HDX,HMGN5,IGBP1,IL2RG,ITGB1BP2,ITM2A,KIAA2022,KIF4A,KLHL4,LPAR4,MAGEE1,MAGEE2,MAGT1,MED12,NAP1L2,NAP1L3,NHSL2,NLGN3,NONO,OGT,OTUD6A,P2RY10,P2RY4,PABPC1L2A,PABPC1L2B,PABPC5,PBDC1,PCDH11X,PDZD11,PGAM4,PGK1,PHKA1,PIN4,PJA1,POF1B,POU3F4,RAB41,RGAG4,RLIM,RPS4X,RPS6KA6,SATL1,SH3BGRL,SLC16A2,SLC7A3,SNX12,TAF1,TAF9B,TBX22,TEX11,TGIF2LX,UPRT,ZCCHC13,ZCCHC5,ZDHHC15,ZMYM3,ZNF711"
TCGA.AA.3844	23	69197560	71587241	402	0.5428	SMALL-GAIN	NONFOCAL	39	"ACRC,ARR3,AWAT1,AWAT2,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,EDA,ERCC6L,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,IGBP1,IL2RG,ITGB1BP2,KIF4A,MED12,NHSL2,NLGN3,NONO,OGT,OTUD6A,P2RY4,PDZD11,PIN4,RAB41,RGAG4,RPS4X,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.AG.3883	23	69290258	76433286	1069	0.4026	SMALL-GAIN	NONFOCAL	54	"ABCB7,ACRC,ARR3,AWAT1,CDX4,CHIC1,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,DMRTC1,DMRTC1B,ERCC6L,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,IGBP1,IL2RG,ITGB1BP2,KIAA2022,KIF4A,MAGEE1,MAGEE2,MED12,NAP1L2,NHSL2,NLGN3,NONO,OGT,P2RY4,PABPC1L2A,PABPC1L2B,PBDC1,PDZD11,PHKA1,PIN4,RAB41,RGAG4,RLIM,RPS4X,SLC16A2,SLC7A3,SNX12,TAF1,TEX11,UPRT,ZCCHC13,ZDHHC15,ZMYM3"
TCGA.AA.A01I.01A	23	69500000	70360438	166	0.384	SMALL-GAIN	NONFOCAL	13	"ARR3,CXorf65,DLG3,FOXO4,GDPD2,IL2RG,KIF4A,MED12,PDZD11,RAB41,SLC7A3,SNX12,TEX11"
TCGA.AZ.6607	23	69696748	88494864	3674	0.6527	SMALL-GAIN	NONFOCAL	76	"ABCB7,ACRC,APOOL,ATP7A,ATRX,BRWD3,CDX4,CHIC1,CHM,CITED1,COX7B,CPXCR1,CXCR3,CXorf49,CXorf49B,CXorf65,CYLC1,CYSLTR1,DACH2,DLG3,DMRTC1,DMRTC1B,ERCC6L,FAM46D,FGF16,FLJ44635,FOXO4,GJB1,GPR174,HDAC8,HDX,HMGN5,IL2RG,ITGB1BP2,ITM2A,KIAA2022,KLHL4,LPAR4,MAGEE1,MAGEE2,MAGT1,MED12,NAP1L2,NHSL2,NLGN3,NONO,OGT,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,PHKA1,PIN4,POF1B,POU3F4,RGAG4,RLIM,RPS4X,RPS6KA6,SATL1,SH3BGRL,SLC16A2,SLC7A3,SNX12,TAF1,TAF9B,TBX22,TEX11,UPRT,ZCCHC13,ZCCHC5,ZDHHC15,ZMYM3,ZNF711"
TCGA.AG.3594	23	69696748	154925044	19415	0.6663	SMALL-GAIN	NONFOCAL	463	Too-Many
TCGA.AF.3914.01A	23	69698962	71885953	283	0.4489	SMALL-GAIN	NONFOCAL	28	"ACRC,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DLG3,ERCC6L,FLJ44635,FOXO4,GJB1,HDAC8,IL2RG,ITGB1BP2,MED12,NHSL2,NLGN3,NONO,OGT,PHKA1,PIN4,RGAG4,RPS4X,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.AA.A00D.01A	23	69942408	79282689	394	0.6747	SMALL-GAIN	NONFOCAL	59	"ABCB7,ACRC,ATP7A,ATRX,CDX4,CHIC1,CITED1,COX7B,CXCR3,CXorf49,CXorf49B,CXorf65,CYSLTR1,DMRTC1,DMRTC1B,ERCC6L,FGF16,FLJ44635,FOXO4,GJB1,GPR174,HDAC8,IL2RG,ITGB1BP2,ITM2A,KIAA2022,LPAR4,MAGEE1,MAGEE2,MAGT1,MED12,NAP1L2,NHSL2,NLGN3,NONO,OGT,P2RY10,PABPC1L2A,PABPC1L2B,PBDC1,PGAM4,PGK1,PHKA1,PIN4,RGAG4,RLIM,RPS4X,SLC16A2,SLC7A3,SNX12,TAF1,TAF9B,TBX22,TEX11,UPRT,ZCCHC13,ZCCHC5,ZDHHC15,ZMYM3"
TCGA.AG.A00C.01A	23	70280819	71495948	192	0.5937	SMALL-GAIN	NONFOCAL	22	"ACRC,CXCR3,CXorf49,CXorf49B,CXorf65,ERCC6L,FLJ44635,FOXO4,GJB1,IL2RG,ITGB1BP2,MED12,NHSL2,NLGN3,NONO,OGT,PIN4,RGAG4,RPS4X,SNX12,TAF1,ZMYM3"
TCGA.AA.A01I.01A	23	70367589	155239443	2832	0.6513	SMALL-GAIN	NONFOCAL	457	Too-Many
TCGA.AG.4009.01A	23	70511578	152845409	2559	0.3811	SMALL-GAIN	NONFOCAL	389	Too-Many
TCGA.AA.A00N.01A	23	72347361	77301780	152	0.5667	SMALL-GAIN	NONFOCAL	19	"ABCB7,ATP7A,ATRX,CDX4,CHIC1,COX7B,FGF16,KIAA2022,MAGEE1,MAGEE2,MAGT1,NAP1L2,PBDC1,PGAM4,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.A6.2681	23	73988337	142086784	15690	0.5417	SMALL-GAIN	NONFOCAL	301	Too-Many
TCGA.DC.6155	23	76151286	118339182	9212	0.6399	SMALL-GAIN	NONFOCAL	161	Too-Many
TCGA.AG.A01J.01A	23	77528188	96396617	224	0.532	SMALL-GAIN	NONFOCAL	30	"APOOL,BRWD3,CHM,CPXCR1,CYLC1,CYSLTR1,DACH2,DIAPH2,FAM133A,FAM46D,GPR174,HDX,HMGN5,ITM2A,KLHL4,LPAR4,NAP1L3,P2RY10,PABPC5,PCDH11X,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TBX22,TGIF2LX,ZCCHC5,ZNF711"
TCGA.AG.A014.01A	23	80370118	96354691	161	0.6333	SMALL-GAIN	NONFOCAL	21	"APOOL,CHM,CPXCR1,CYLC1,DACH2,DIAPH2,FAM133A,HDX,HMGN5,KLHL4,NAP1L3,PABPC5,PCDH11X,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TGIF2LX,ZNF711"
TCGA.DM.A28M.01A	23	80370118	96854188	169	0.6545	SMALL-GAIN	NONFOCAL	21	"APOOL,CHM,CPXCR1,CYLC1,DACH2,DIAPH2,FAM133A,HDX,HMGN5,KLHL4,NAP1L3,PABPC5,PCDH11X,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TGIF2LX,ZNF711"
TCGA.NH.A50U	23	81364941	88431670	1794	0.6314	SMALL-GAIN	NONFOCAL	12	"APOOL,CHM,CPXCR1,CYLC1,DACH2,HDX,KLHL4,POF1B,POU3F4,RPS6KA6,SATL1,ZNF711"
TCGA.DM.A1DA	23	84450482	154925044	17412	0.6608	SMALL-GAIN	NONFOCAL	393	Too-Many
TCGA.AY.A54L.01A	23	86888732	155254944	2659	0.4001	SMALL-GAIN	NONFOCAL	391	Too-Many
TCGA.EI.7002	23	90287714	154925044	15791	0.4528	SMALL-GAIN	NONFOCAL	386	Too-Many
TCGA.G5.6235	23	90287714	154925044	15804	0.3822	SMALL-GAIN	NONFOCAL	386	Too-Many
TCGA.A6.6137	23	92363392	154925044	15533	0.5925	SMALL-GAIN	NONFOCAL	384	Too-Many
TCGA.AZ.6607	23	92392945	154925044	15421	0.6588	SMALL-GAIN	NONFOCAL	384	Too-Many
TCGA.NH.A50U	23	92480913	154925044	15222	0.6576	SMALL-GAIN	NONFOCAL	384	Too-Many
TCGA.DM.A0X9	23	95422359	154925044	14814	0.4174	SMALL-GAIN	NONFOCAL	382	Too-Many
TCGA.AZ.6601	23	96264485	154925044	14484	0.588	SMALL-GAIN	NONFOCAL	381	Too-Many
TCGA.AF.2693	23	96466176	154925044	14289	0.5281	SMALL-GAIN	NONFOCAL	381	Too-Many
TCGA.AA.3941	23	100097487	100737724	139	0.4042	SMALL-GAIN	NONFOCAL	14	"ARL13A,BTK,CENPI,DRP2,GLA,HNRNPH2,NOX1,RPL36A,RPL36A-HNRNPH2,TAF7L,TIMM8A,TMEM35,TRMT2B,XKRX"
TCGA.AA.3939.01A	23	100653721	155246280	2358	0.4353	SMALL-GAIN	NONFOCAL	365	Too-Many
TCGA.AA.A00D.01A	23	100870667	101615448	27	0.4389	SMALL-GAIN	NONFOCAL	11	"ARMCX2,ARMCX3,ARMCX6,BEX5,NXF2,NXF2B,NXF5,TCEAL2,TCEAL6,TCP11X2,ZMAT1"
TCGA.AA.A00Q.01A	23	101581111	105855284	93	0.6284	SMALL-GAIN	NONFOCAL	41	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,CXorf57,ESX1,FAM199X,GLRA4,GPRASP1,GPRASP2,H2BFM,H2BFWT,IL1RAPL2,MORF4L2,MUM1L1,NGFRAP1,NRK,NXF2,NXF2B,NXF3,PLP1,RAB40A,RAB40AL,RAB9B,SERPINA7,SLC25A53,TCEAL1,TCEAL3,TCEAL4,TCEAL5,TCEAL7,TCEAL8,TCP11X2,TEX13A,TMEM31,TMSB15A,TMSB15B,WBP5,ZCCHC18"
TCGA.AA.A00D.01A	23	102968398	105855284	52	0.5082	SMALL-GAIN	NONFOCAL	17	"CXorf57,ESX1,FAM199X,GLRA4,H2BFM,H2BFWT,IL1RAPL2,MUM1L1,NRK,PLP1,RAB9B,SERPINA7,SLC25A53,TEX13A,TMEM31,TMSB15B,ZCCHC18"
TCGA.DM.A28M.01A	23	103411430	114391096	477	0.4095	SMALL-GAIN	NONFOCAL	47	"ACSL4,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CXorf57,DCX,ESX1,FAM199X,FRMPD3,GUCY2F,HTR2C,IL13RA2,IL1RAPL2,IRS4,KCNE5,LHFPL1,LRCH2,MID2,MORC4,MUM1L1,NRK,NUP62CL,NXT2,PAK3,PIH1D3,PRPS1,PSMD10,RBM41,RGAG1,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13A,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.CK.5914.01A	23	103903535	106331634	118	0.5537	SMALL-GAIN	NONFOCAL	12	"CLDN2,CXorf57,IL1RAPL2,MORC4,MUM1L1,NRK,RBM41,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13A"
TCGA.AG.A01J.01A	23	104728246	117752476	549	0.5084	SMALL-GAIN	NONFOCAL	53	"ACSL4,AGTR2,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CT83,CXorf57,DCX,DOCK11,FRMPD3,GUCY2F,HTR2C,IL13RA2,IL1RAPL2,IRS4,KCNE5,KLHL13,LHFPL1,LRCH2,LUZP4,MID2,MORC4,MUM1L1,NRK,NUP62CL,NXT2,PAK3,PIH1D3,PLS3,PRPS1,PSMD10,RBM41,RBMXL3,RGAG1,RIPPLY1,RNF128,SERPINA7,SLC6A14,TBC1D8B,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,WDR44,ZCCHC16"
TCGA.AZ.4684.01A	23	106482094	114239713	320	0.4755	SMALL-GAIN	NONFOCAL	31	"ACSL4,ALG13,AMMECR1,AMOT,ATG4A,CAPN6,CHRDL1,COL4A5,COL4A6,DCX,FRMPD3,GUCY2F,HTR2C,IL13RA2,IRS4,KCNE5,LHFPL1,MID2,NXT2,PAK3,PIH1D3,PRPS1,PSMD10,RGAG1,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.AA.A00Q.01A	23	106515863	122754681	583	0.6724	SMALL-GAIN	NONFOCAL	84	"ACSL4,AGTR2,AKAP14,ALG13,AMMECR1,AMOT,ATG4A,ATP1B4,C1GALT1C1,CAPN6,CHRDL1,COL4A5,COL4A6,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CT83,CUL4B,CXorf56,DCX,DOCK11,FRMPD3,GLUD2,GRIA3,GUCY2F,HTR2C,IL13RA1,IL13RA2,IRS4,KCNE5,KIAA1210,KLHL13,LAMP2,LHFPL1,LONRF3,LRCH2,LUZP4,MCTS1,MID2,NDUFA1,NKAP,NKRF,NXT2,PAK3,PGRMC1,PLS3,PRPS1,PSMD10,RBMXL3,RGAG1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SLC6A14,SOWAHD,TEX13B,THOC2,TMEM164,TMEM255A,TRPC5,TRPC5OS,TSC22D3,UBE2A,UPF3B,VSIG1,WDR44,ZBTB33,ZCCHC12,ZCCHC16"
TCGA.AZ.4614	23	111438244	116265902	1302	0.4099	SMALL-GAIN	NONFOCAL	12	"AGTR2,AMOT,CT83,HTR2C,IL13RA2,LHFPL1,LRCH2,LUZP4,PLS3,RBMXL3,SLC6A14,ZCCHC16"
TCGA.AZ.6606	23	111585663	154925044	11396	0.5466	SMALL-GAIN	NONFOCAL	276	Too-Many
TCGA.DM.A282.01A	23	114404852	155254944	1831	0.4197	SMALL-GAIN	NONFOCAL	273	Too-Many
TCGA.AA.A00A.01A	23	114881851	155003485	1361	0.4537	SMALL-GAIN	NONFOCAL	268	Too-Many
TCGA.AA.3982	23	117237256	119562717	615	0.4413	SMALL-GAIN	NONFOCAL	28	"AKAP14,ATP1B4,CXorf56,DOCK11,IL13RA1,KIAA1210,KLHL13,LAMP2,LONRF3,NDUFA1,NKAP,NKRF,PGRMC1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,TMEM255A,UBE2A,UPF3B,WDR44,ZBTB33,ZCCHC12"
TCGA.AA.3844	23	117287439	119138049	538	0.5755	SMALL-GAIN	NONFOCAL	20	"AKAP14,CXorf56,DOCK11,IL13RA1,KIAA1210,LONRF3,NDUFA1,NKAP,NKRF,PGRMC1,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,UBE2A,UPF3B,WDR44,ZCCHC12"
TCGA.A6.6650	23	117941115	119004120	293	0.4846	SMALL-GAIN	NONFOCAL	13	"CXorf56,KIAA1210,LONRF3,NKRF,PGRMC1,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,UBE2A,UPF3B,ZCCHC12"
TCGA.AZ.4614	23	117989079	146712924	7694	0.4281	SMALL-GAIN	NONFOCAL	145	Too-Many
TCGA.DC.6155	23	118346837	124698147	1730	0.6388	SMALL-GAIN	NONFOCAL	45	"AKAP14,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,CXorf56,GLUD2,GRIA3,LAMP2,LOC100129520,MCTS1,NDUFA1,NKAP,NKRF,PGRMC1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SH2D1A,SLC25A43,SLC25A5,SOWAHD,STAG2,TENM1,THOC2,TMEM255A,UBE2A,UPF3B,XIAP,ZBTB33"
TCGA.AA.3860	23	118346837	151823140	9145	0.3929	SMALL-GAIN	NONFOCAL	174	Too-Many
TCGA.F4.6460	23	118346837	154925044	9637	0.4972	SMALL-GAIN	NONFOCAL	257	Too-Many
TCGA.AF.2692	23	118348039	121853752	921	0.5758	SMALL-GAIN	NONFOCAL	38	"AKAP14,ATP1B4,C1GALT1C1,CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,CUL4B,CXorf56,GLUD2,LAMP2,MCTS1,NDUFA1,NKAP,NKRF,PGRMC1,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SLC25A43,SLC25A5,SOWAHD,TMEM255A,UBE2A,UPF3B,ZBTB33"
TCGA.A6.6650	23	119609246	152327819	8206	0.4329	SMALL-GAIN	NONFOCAL	166	Too-Many
TCGA.AA.3956	23	119868952	154925044	9103	0.562	SMALL-GAIN	NONFOCAL	233	Too-Many
TCGA.AG.A02X.01A	23	122250769	155239443	1261	0.4608	SMALL-GAIN	NONFOCAL	221	Too-Many
TCGA.F5.6464	23	122373931	141865579	4816	0.4589	SMALL-GAIN	NONFOCAL	95	"ACTRT1,ADGRG4,AIFM1,APLN,ARHGAP36,ARHGEF6,ATP11C,BCORL1,BRS3,CCDC160,CD40LG,CDR1,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,CXorf66,DCAF12L1,DCAF12L2,DDX26B,ELF4,ENOX2,F9,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FGF13,FHL1,FRMD7,GPC3,GPC4,GPR101,GPR119,GRIA3,HPRT1,HS6ST2,HTATSF1,IGSF1,LDOC1,LOC100129520,LOC389895,MAGEC1,MAGEC2,MAGEC3,MAP7D3,MBNL3,MCF2,MMGT1,MOSPD1,OCRL,OR13H1,PHF6,PLAC1,PRR32,RAB33A,RAP2C,RBMX,RBMX2,SAGE1,SASH3,SH2D1A,SLC25A14,SLC9A6,SMARCA1,SMIM10,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,STAG2,STK26,TENM1,TFDP3,THOC2,USP26,UTP14A,VGLL1,XIAP,XPNPEP2,ZDHHC9,ZIC3,ZNF280C,ZNF449,ZNF75D"
TCGA.AF.2692	23	122994860	133906464	2399	0.5358	SMALL-GAIN	NONFOCAL	42	"ACTRT1,AIFM1,APLN,ARHGAP36,BCORL1,CCDC160,DCAF12L1,DCAF12L2,ELF4,ENOX2,FAM122B,FRMD7,GPC3,GPC4,GPR119,HPRT1,HS6ST2,IGSF1,LOC100129520,MBNL3,OCRL,OR13H1,PHF6,PLAC1,PRR32,RAB33A,RAP2C,RBMX2,SASH3,SH2D1A,SLC25A14,SMARCA1,STAG2,STK26,TENM1,TFDP3,USP26,UTP14A,XIAP,XPNPEP2,ZDHHC9,ZNF280C"
TCGA.A6.3808.01A	23	123227826	128957615	127	0.4856	SMALL-GAIN	NONFOCAL	14	"ACTRT1,APLN,DCAF12L1,DCAF12L2,LOC100129520,OCRL,PRR32,SASH3,SH2D1A,SMARCA1,STAG2,TENM1,XPNPEP2,ZDHHC9"
TCGA.F5.6810	23	123709757	154925044	8050	0.6228	SMALL-GAIN	NONFOCAL	214	Too-Many
TCGA.AH.6549.01A	23	123838834	154774710	1363	0.6109	SMALL-GAIN	NONFOCAL	213	Too-Many
TCGA.DC.6155	23	124725457	152713152	7580	0.677	SMALL-GAIN	NONFOCAL	147	Too-Many
TCGA.AG.A00C.01A	23	128614639	129546368	157	0.5327	SMALL-GAIN	NONFOCAL	15	"AIFM1,APLN,BCORL1,ELF4,GPR119,OCRL,RAB33A,RBMX2,SASH3,SLC25A14,SMARCA1,UTP14A,XPNPEP2,ZDHHC9,ZNF280C"
TCGA.AA.3844	23	128736842	129623034	213	0.6042	SMALL-GAIN	NONFOCAL	13	"AIFM1,APLN,BCORL1,ELF4,GPR119,RAB33A,RBMX2,SASH3,SLC25A14,UTP14A,XPNPEP2,ZDHHC9,ZNF280C"
TCGA.AA.A00D.01A	23	129505477	133087025	93	0.569	SMALL-GAIN	NONFOCAL	16	"ARHGAP36,ENOX2,FRMD7,GPC3,GPC4,GPR119,HS6ST2,IGSF1,MBNL3,OR13H1,RAP2C,RBMX2,SLC25A14,STK26,TFDP3,USP26"
TCGA.AA.A00Q.01A	23	129629116	133527859	99	0.5191	SMALL-GAIN	NONFOCAL	15	"ARHGAP36,CCDC160,ENOX2,FRMD7,GPC3,GPC4,HS6ST2,IGSF1,MBNL3,OR13H1,PHF6,RAP2C,STK26,TFDP3,USP26"
TCGA.AA.3844	23	130793578	135412599	806	0.4129	SMALL-GAIN	NONFOCAL	40	"ADGRG4,CCDC160,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FHL1,FRMD7,GPC3,GPC4,HPRT1,HS6ST2,MAP7D3,MBNL3,MMGT1,MOSPD1,PHF6,PLAC1,RAP2C,SAGE1,SLC9A6,SMIM10,STK26,TFDP3,USP26,ZNF449,ZNF75D"
TCGA.AA.3941	23	131838175	134598556	423	0.4792	SMALL-GAIN	NONFOCAL	19	"CCDC160,CT55,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,GPC3,GPC4,HPRT1,HS6ST2,MOSPD1,PHF6,PLAC1,SMIM10,TFDP3,USP26,ZNF449,ZNF75D"
TCGA.AG.A00C.01A	23	133511640	134427639	52	0.4741	SMALL-GAIN	NONFOCAL	12	"CT55,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,HPRT1,MOSPD1,PHF6,PLAC1,SMIM10,ZNF75D"
TCGA.AA.A00Q.01A	23	133674183	151820997	485	0.672	SMALL-GAIN	NONFOCAL	94	"ADGRG4,AFF2,ARHGEF6,ATP11C,BRS3,CD40LG,CD99L2,CDR1,CNGA2,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,CXorf40A,CXorf40B,CXorf51A,CXorf51B,CXorf66,DDX26B,F9,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,FATE1,FGF13,FHL1,FMR1,FMR1NB,GABRA3,GABRE,GABRQ,GPR101,GPR50,HMGB3,HSFX1,HSFX2,HTATSF1,IDS,LDOC1,LOC389895,MAGEA10,MAGEA10-MAGEA5,MAGEA11,MAGEA4,MAGEA5,MAGEA8,MAGEA9,MAGEA9B,MAGEC1,MAGEC2,MAGEC3,MAMLD1,MAP7D3,MCF2,MMGT1,MOSPD1,MTM1,MTMR1,PASD1,PLAC1,PRRG3,RBMX,SAGE1,SLC9A6,SLITRK2,SLITRK4,SMIM10,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM185A,TMEM257,UBE2NL,VGLL1,VMA21,ZIC3,ZNF449,ZNF75D"
TCGA.AF.2692	23	134120114	152602716	5616	0.4378	SMALL-GAIN	NONFOCAL	105	Too-Many
TCGA.G4.6299	23	134312416	154925044	5846	0.5859	SMALL-GAIN	NONFOCAL	168	Too-Many
TCGA.AA.3941	23	134609913	136154060	354	0.4474	SMALL-GAIN	NONFOCAL	24	"ADGRG4,ARHGEF6,BRS3,CD40LG,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,DDX26B,FHL1,GPR101,HTATSF1,MAP7D3,MMGT1,RBMX,SAGE1,SLC9A6,VGLL1"
TCGA.AA.A00N.01A	23	134654891	134994905	36	0.4152	SMALL-GAIN	NONFOCAL	12	"CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,DDX26B,SAGE1"
TCGA.AG.3726	23	136560269	154925044	5357	0.4427	SMALL-GAIN	NONFOCAL	142	Too-Many
TCGA.AA.A02H.01A	23	137792969	142596655	98	0.5316	SMALL-GAIN	NONFOCAL	19	"ATP11C,CDR1,CXorf66,F9,FGF13,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN3,SPANXN4"
TCGA.AA.A00N.01A	23	138444269	144337150	107	0.608	SMALL-GAIN	NONFOCAL	22	"ATP11C,CDR1,CXorf66,F9,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,UBE2NL"
TCGA.AA.A00K.01A	23	139585863	145078654	39	0.4951	SMALL-GAIN	NONFOCAL	19	"CDR1,LDOC1,MAGEC1,MAGEC2,MAGEC3,SLITRK2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN1,SPANXN2,SPANXN3,SPANXN4,TMEM257,UBE2NL"
TCGA.DC.6154	23	141163916	154925044	3998	0.5505	SMALL-GAIN	NONFOCAL	125	Too-Many
TCGA.D5.6533	23	141312468	154925044	3920	0.4883	SMALL-GAIN	NONFOCAL	124	Too-Many
TCGA.F5.6464	23	141895097	154925044	3693	0.4561	SMALL-GAIN	NONFOCAL	124	Too-Many
TCGA.A6.2681	23	143497861	154543124	3136	0.5497	SMALL-GAIN	NONFOCAL	117	Too-Many
TCGA.G4.6311	23	144572812	154925044	2796	0.4749	SMALL-GAIN	NONFOCAL	118	Too-Many
TCGA.AG.3885	23	144961021	149498484	1398	0.5371	SMALL-GAIN	NONFOCAL	15	"AFF2,CXorf40A,CXorf40B,CXorf51A,CXorf51B,FMR1,FMR1NB,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,TMEM185A"
TCGA.AZ.4614	23	147979204	154925044	1593	0.4491	SMALL-GAIN	NONFOCAL	112	Too-Many
TCGA.AA.3844	23	148294166	152625374	1242	0.3902	SMALL-GAIN	NONFOCAL	43	"CD99L2,CETN2,CNGA2,CSAG1,CSAG3,CXorf40A,CXorf40B,FATE1,GABRA3,GABRE,GABRQ,GPR50,HMGB3,HSFX1,HSFX2,IDS,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA11,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MTM1,MTMR1,NSDHL,PASD1,PNMA3,PNMA5,PNMA6A,PRRG3,TMEM185A,VMA21,ZNF185,ZNF275"
TCGA.T9.A92H	23	148886556	154059411	1273	0.4169	SMALL-GAIN	NONFOCAL	87	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CD99L2,CETN2,CNGA2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,CXorf40B,DKC1,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FATE1,FLNA,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,GPR50,HAUS7,HCFC1,HMGB3,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MAGEA8,MAMLD1,MECP2,MPP1,MTM1,MTMR1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PASD1,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,PRRG3,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,VMA21,ZFP92,ZNF185,ZNF275"
TCGA.AA.3971	23	149101990	153580675	1203	0.6523	SMALL-GAIN	NONFOCAL	65	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,CD99L2,CETN2,CNGA2,CSAG1,CSAG3,CXorf40B,DUSP9,FAM58A,FATE1,FLNA,GABRA3,GABRE,GABRQ,GPR50,HAUS7,HCFC1,HMGB3,IDH3G,IRAK1,L1CAM,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MAMLD1,MECP2,MTM1,MTMR1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PASD1,PDZD4,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,PRRG3,RENBP,SLC6A8,SRPK3,SSR4,TEX28,TKTL1,TMEM187,TREX2,VMA21,ZFP92,ZNF185,ZNF275"
TCGA.AA.3941	23	149820365	151153295	513	0.4511	SMALL-GAIN	NONFOCAL	12	"CD99L2,CNGA2,FATE1,GABRE,GPR50,HMGB3,MAGEA4,MTM1,MTMR1,PASD1,PRRG3,VMA21"
TCGA.NH.A8F7	23	150878656	154925044	771	0.3961	SMALL-GAIN	NONFOCAL	92	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CETN2,CLIC2,CMC4,CNGA2,CSAG1,CSAG3,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FATE1,FLNA,FUNDC2,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,MECP2,MPP1,MTCP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF185,ZNF275"
TCGA.AA.3982	23	151743048	153580675	366	0.5681	SMALL-GAIN	NONFOCAL	47	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,CETN2,CSAG1,CSAG3,DUSP9,FAM58A,FLNA,GABRQ,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MAGEA1,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,MECP2,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,SLC6A8,SRPK3,SSR4,TEX28,TKTL1,TMEM187,TREX2,ZFP92,ZNF185,ZNF275"
TCGA.AA.A00Q.01A	23	151996329	153906403	263	0.4749	SMALL-GAIN	NONFOCAL	57	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CETN2,CTAG1A,CTAG1B,CTAG2,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GAB3,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MECP2,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,ZFP92,ZNF185,ZNF275"
TCGA.AG.A00C.01A	23	152113780	153609051	227	0.5401	SMALL-GAIN	NONFOCAL	38	"ABCD1,ARHGAP4,ATP2B3,AVPR2,BCAP31,BGN,DUSP9,EMD,FAM58A,FLNA,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,MAGEA1,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,RENBP,SLC6A8,SRPK3,SSR4,TEX28,TKTL1,TMEM187,TREX2,ZFP92,ZNF185,ZNF275"
TCGA.AA.3860	23	152222115	154925044	359	0.4426	SMALL-GAIN	NONFOCAL	72	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MAGEA1,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA6A,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF275"
TCGA.A6.6650	23	152560847	154925044	281	0.4512	SMALL-GAIN	NONFOCAL	69	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,MPP1,MTCP1,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SPRY3,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TMLHE,TREX2,UBL4A,VBP1,ZFP92,ZNF275"
TCGA.AA.A024.01A	23	152986276	153409719	91	0.4284	SMALL-GAIN	NONFOCAL	17	"ABCD1,ARHGAP4,AVPR2,BCAP31,HCFC1,IDH3G,IRAK1,L1CAM,MECP2,NAA10,OPN1LW,PDZD4,PLXNB3,RENBP,SRPK3,SSR4,TMEM187"
TCGA.AA.A024.01A	23	153590310	153715809	55	0.4247	SMALL-GAIN	NONFOCAL	12	"ATP6AP1,DNASE1L1,EMD,FAM50A,FLNA,GDI1,LAGE3,PLXNA3,RPL10,SLC10A3,TAZ,UBL4A"
TCGA.AG.A00C.01A	23	153669943	153944252	54	0.3883	SMALL-GAIN	NONFOCAL	13	"CTAG1A,CTAG1B,CTAG2,FAM3A,FAM50A,G6PD,GAB3,GDI1,IKBKG,LAGE3,PLXNA3,SLC10A3,UBL4A"
TCGA.AA.3971	23	153713096	154925044	125	0.623	SMALL-GAIN	NONFOCAL	28	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FUNDC2,G6PD,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,MPP1,MTCP1,RAB39B,SLC10A3,SMIM9,SPRY3,TMLHE,UBL4A,VBP1"
TCGA.A6.3810.01A	23	153792515	155003836	118	0.4378	SMALL-GAIN	NONFOCAL	24	"BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,GAB3,H2AFB1,H2AFB2,H2AFB3,IKBKG,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VBP1"
TCGA.AF.2692	23	153903394	154915974	106	0.4265	SMALL-GAIN	NONFOCAL	20	"BRCC3,CLIC2,CMC4,DKC1,F8,F8A1,F8A2,F8A3,FUNDC2,GAB3,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VBP1"
TCGA.AZ.4684.01A	23	154124315	155130128	72	0.5514	SMALL-GAIN	NONFOCAL	17	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,MTCP1,RAB39B,SPRY3,TMLHE,VAMP7,VBP1"
TCGA.T9.A92H	23	154167287	154925044	63	0.3901	SMALL-GAIN	NONFOCAL	16	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,MTCP1,RAB39B,SPRY3,TMLHE,VBP1"
TCGA.3L.AA1B	23	154209612	154925044	55	0.5692	SMALL-GAIN	NONFOCAL	16	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,MTCP1,RAB39B,SPRY3,TMLHE,VBP1"
TCGA.AA.A00K.01A	23	154563611	155239443	30	0.4462	SMALL-GAIN	NONFOCAL	11	"CLIC2,F8A1,F8A2,F8A3,H2AFB1,H2AFB2,H2AFB3,IL9R,SPRY3,TMLHE,VAMP7"
TCGA.AA.A00K.01A	24	2654981	21764092	146	0.4125	SMALL-GAIN	NONFOCAL	27	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,HSFY1,HSFY2,NLGN4Y,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.A00A.01A	24	2654981	22942770	173	0.6559	SMALL-GAIN	NONFOCAL	30	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.A00N.01A	24	2654981	25375680	190	0.5652	SMALL-GAIN	NONFOCAL	46	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AG.A036.01A	24	2714999	25599434	196	0.3874	SMALL-GAIN	NONFOCAL	45	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AA.3980.01A	24	4900654	21154352	3	0.3928	SMALL-GAIN	NONFOCAL	23	"AMELY,CD24,CDY2A,CDY2B,DDX3Y,HSFY1,HSFY2,NLGN4Y,PCDH11Y,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.3861.01A	24	6115338	25375680	168	0.6023	SMALL-GAIN	NONFOCAL	41	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AG.A02G.01A	24	7171926	27190045	141	0.5537	SMALL-GAIN	NONFOCAL	40	"BPY2,BPY2B,BPY2C,CD24,CDY1,CDY1B,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,TMSB4Y,TSPY1,TSPY10,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AG.3611.01A	24	14518553	27768623	134	0.571	SMALL-GAIN	NONFOCAL	35	"BPY2,BPY2B,BPY2C,CD24,CDY1,CDY1B,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.A00K.01A	24	21904987	27768623	17	0.6372	SMALL-GAIN	NONFOCAL	21	"BPY2,BPY2B,BPY2C,CDY1,CDY1B,DAZ1,DAZ2,DAZ3,DAZ4,EIF1AY,KDM5D,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2"
TCGA.AF.3914.01A	1	69079	883823	12	-1.1444	SMALL-LOSS	FOCAL	6	"NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,SAMD11"
TCGA.AA.3666	1	564620	947033	13	-0.7825	SMALL-LOSS	FOCAL	9	"HES4,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,SAMD11"
TCGA.AA.3488	1	564620	949607	14	-0.7918	SMALL-LOSS	FOCAL	10	"HES4,ISG15,KLHL17,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,SAMD11"
TCGA.AG.3901	1	949607	1018703	7	-0.7194	SMALL-LOSS	FOCAL	4	"AGRN,C1orf159,ISG15,RNF223"
TCGA.AA.A010.01A	1	975998	1120382	40	-1.1084	SMALL-LOSS	FOCAL	4	"AGRN,C1orf159,RNF223,TTLL10"
TCGA.AY.A71X	1	990416	1048954	9	-1.1028	SMALL-LOSS	FOCAL	3	"AGRN,C1orf159,RNF223"
TCGA.AA.3930.01A	1	1018224	1102433	8	-1.2035	SMALL-LOSS	FOCAL	1	C1orf159
TCGA.AA.3930.01A	1	1221255	1322670	24	-0.7725	SMALL-LOSS	FOCAL	10	"ACAP3,AURKAIP1,CCNL2,CPSF3L,CPTP,DVL1,MXRA8,PUSL1,SCNN1D,TAS1R3"
TCGA.AG.A01W.01A	1	1281838	1320589	12	-0.5154	SMALL-LOSS	FOCAL	3	"AURKAIP1,DVL1,MXRA8"
TCGA.AA.A01Q.01A	1	1309182	1341130	14	-0.6317	SMALL-LOSS	FOCAL	3	"AURKAIP1,CCNL2,MRPL20"
TCGA.AA.A010.01A	1	1407236	1458838	24	-0.885	SMALL-LOSS	FOCAL	2	"ATAD3A,ATAD3B"
TCGA.AA.A010.01A	1	1509799	1576342	19	-1.1125	SMALL-LOSS	FOCAL	5	"C1orf233,CDK11B,MIB2,MMP23B,SSU72"
TCGA.AG.A01W.01A	1	1565451	1597378	17	-0.6439	SMALL-LOSS	FOCAL	4	"CDK11B,MIB2,MMP23B,SLC35E2B"
TCGA.AA.A00N.01A	1	1572753	1638816	20	-1.0619	SMALL-LOSS	FOCAL	3	"CDK11A,CDK11B,SLC35E2B"
TCGA.AA.A010.01A	1	1607455	1693332	31	-0.7405	SMALL-LOSS	FOCAL	5	"CDK11A,CDK11B,NADK,SLC35E2,SLC35E2B"
TCGA.AG.A01W.01A	1	1629413	1653693	7	-0.901	SMALL-LOSS	FOCAL	2	"CDK11A,CDK11B"
TCGA.AA.A010.01A	1	1735837	1918325	34	-0.5439	SMALL-LOSS	FOCAL	4	"CALML6,CFAP74,GNB1,TMEM52"
TCGA.AA.A010.01A	1	1919526	1922265	4	-1.1926	SMALL-LOSS	FOCAL	1	CFAP74
TCGA.AA.A01Q.01A	1	1956332	2237439	32	-0.6561	SMALL-LOSS	FOCAL	4	"C1orf86,GABRD,PRKCZ,SKI"
TCGA.AA.A010.01A	1	2237968	2440235	48	-1.0453	SMALL-LOSS	FOCAL	6	"MORN1,PANK4,PEX10,PLCH2,RER1,SKI"
TCGA.AA.A01Q.01A	1	2330817	2443004	10	-0.5298	SMALL-LOSS	FOCAL	4	"PANK4,PEX10,PLCH2,RER1"
TCGA.AA.A00N.01A	1	2333486	2457866	44	-0.7091	SMALL-LOSS	FOCAL	4	"PANK4,PEX10,PLCH2,RER1"
TCGA.AG.3906.01A	1	2489790	3519008	39	-0.5657	SMALL-LOSS	FOCAL	8	"ACTRT2,ARHGEF16,FAM213B,MEGF6,MMEL1,PRDM16,TNFRSF14,TTC34"
TCGA.AA.A01Q.01A	1	2494260	2535270	20	-0.7389	SMALL-LOSS	FOCAL	3	"FAM213B,MMEL1,TNFRSF14"
TCGA.AA.A00N.01A	1	2519109	3396974	61	-0.5915	SMALL-LOSS	FOCAL	6	"ACTRT2,ARHGEF16,FAM213B,MMEL1,PRDM16,TTC34"
TCGA.AA.A010.01A	1	3342604	3394399	15	-1.1414	SMALL-LOSS	FOCAL	2	"ARHGEF16,PRDM16"
TCGA.AA.A01Q.01A	1	3541608	3563955	14	-0.9654	SMALL-LOSS	FOCAL	2	"TPRG1L,WRAP73"
TCGA.AG.4009.01A	1	3542240	3731926	40	-0.6798	SMALL-LOSS	FOCAL	7	"CCDC27,CEP104,LRRC47,SMIM1,TP73,TPRG1L,WRAP73"
TCGA.AA.A00N.01A	1	3542240	3809395	82	-0.7783	SMALL-LOSS	FOCAL	9	"C1orf174,CCDC27,CEP104,DFFB,LRRC47,SMIM1,TP73,TPRG1L,WRAP73"
TCGA.AG.3906.01A	1	3599582	3756155	37	-0.6124	SMALL-LOSS	FOCAL	5	"CCDC27,CEP104,LRRC47,SMIM1,TP73"
TCGA.AG.3891.01A	1	3644641	3647983	4	-0.8612	SMALL-LOSS	FOCAL	1	TP73
TCGA.AA.A01Q.01A	1	3680238	4834423	48	-0.5936	SMALL-LOSS	FOCAL	7	"AJAP1,C1orf174,CCDC27,CEP104,DFFB,LRRC47,SMIM1"
TCGA.AA.A010.01A	1	3800049	4715434	5	-0.9099	SMALL-LOSS	FOCAL	3	"AJAP1,C1orf174,DFFB"
TCGA.A6.4107	1	4237983	4343734	42	-0.8145	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A5IV	1	4971216	5102143	97	-0.6918	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6461	1	5245817	6112652	407	-0.6246	SMALL-LOSS	FOCAL	2	"KCNAB2,NPHP4"
TCGA.AM.5820	1	5831117	5879771	5	-0.705	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	1	5933257	6206678	55	-0.8111	SMALL-LOSS	FOCAL	3	"CHD5,KCNAB2,NPHP4"
TCGA.A6.6653	1	6011128	6281666	64	-0.5365	SMALL-LOSS	FOCAL	6	"CHD5,ICMT,KCNAB2,NPHP4,RNF207,RPL22"
TCGA.AA.A01Q.01A	1	6100571	6500987	84	-0.5465	SMALL-LOSS	FOCAL	10	"ACOT7,CHD5,ESPN,GPR153,HES2,HES3,ICMT,KCNAB2,RNF207,RPL22"
TCGA.AG.4009.01A	1	6246734	6314593	18	-0.7983	SMALL-LOSS	FOCAL	5	"GPR153,HES3,ICMT,RNF207,RPL22"
TCGA.AA.A010.01A	1	6259526	6272263	9	-0.6003	SMALL-LOSS	FOCAL	2	"RNF207,RPL22"
TCGA.AF.3914.01A	1	6445505	6535056	26	-0.9843	SMALL-LOSS	FOCAL	5	"ACOT7,ESPN,HES2,PLEKHG5,TNFRSF25"
TCGA.AG.4009.01A	1	6445505	6537552	28	-0.9633	SMALL-LOSS	FOCAL	5	"ACOT7,ESPN,HES2,PLEKHG5,TNFRSF25"
TCGA.AA.A01Q.01A	1	6504489	6537552	27	-1.2827	SMALL-LOSS	FOCAL	3	"ESPN,PLEKHG5,TNFRSF25"
TCGA.AM.5820	1	6579459	7393772	240	-0.5839	SMALL-LOSS	FOCAL	9	"CAMTA1,DNAJC11,KLHL21,NOL9,PHF13,PLEKHG5,TAS1R1,THAP3,ZBTB48"
TCGA.AA.A01Q.01A	1	6585863	7737622	66	-0.5897	SMALL-LOSS	FOCAL	8	"CAMTA1,DNAJC11,KLHL21,NOL9,PHF13,TAS1R1,THAP3,ZBTB48"
TCGA.AA.A010.01A	1	6589032	7831367	79	-0.5181	SMALL-LOSS	FOCAL	9	"CAMTA1,DNAJC11,KLHL21,NOL9,PHF13,TAS1R1,THAP3,VAMP3,ZBTB48"
TCGA.AG.3909.01A	1	6630928	6713922	37	-0.9203	SMALL-LOSS	FOCAL	6	"DNAJC11,KLHL21,PHF13,TAS1R1,THAP3,ZBTB48"
TCGA.AG.4009.01A	1	6676786	6688532	4	-0.9401	SMALL-LOSS	FOCAL	2	"PHF13,THAP3"
TCGA.AA.A00N.01A	1	7807709	7868904	20	-1.3125	SMALL-LOSS	FOCAL	3	"CAMTA1,PER3,VAMP3"
TCGA.AA.3982	1	7822722	7823835	3	-0.83	SMALL-LOSS	FOCAL	1	CAMTA1
TCGA.AG.4009.01A	1	7833440	7853941	9	-0.9824	SMALL-LOSS	FOCAL	2	"PER3,VAMP3"
TCGA.AG.3909.01A	1	7858538	8424069	53	-0.5654	SMALL-LOSS	FOCAL	7	"ERRFI1,PARK7,PER3,RERE,SLC45A1,TNFRSF9,UTS2"
TCGA.AA.3667	1	7927509	8931148	221	-0.7127	SMALL-LOSS	FOCAL	6	"ENO1,ERRFI1,PARK7,RERE,SLC45A1,TNFRSF9"
TCGA.AA.A00N.01A	1	7997697	8568624	37	-0.918	SMALL-LOSS	FOCAL	5	"ERRFI1,PARK7,RERE,SLC45A1,TNFRSF9"
TCGA.CI.6623	1	8176193	8495944	92	-0.5263	SMALL-LOSS	FOCAL	2	"RERE,SLC45A1"
TCGA.CK.5914.01A	1	8415471	9211690	67	-0.6157	SMALL-LOSS	FOCAL	6	"CA6,ENO1,GPR157,RERE,SLC2A5,SLC2A7"
TCGA.AA.A00Q.01A	1	8421791	8555076	8	-1.2123	SMALL-LOSS	FOCAL	1	RERE
TCGA.AG.4009.01A	1	8482729	8568624	5	-0.8542	SMALL-LOSS	FOCAL	1	RERE
TCGA.AA.A010.01A	1	8922875	8934828	10	-0.6211	SMALL-LOSS	FOCAL	1	ENO1
TCGA.AG.4009.01A	1	9097595	9117456	6	-0.8363	SMALL-LOSS	FOCAL	1	SLC2A5
TCGA.AA.3858	1	9526978	10249962	93	-1.0426	SMALL-LOSS	FOCAL	9	"CLSTN1,CTNNBIP1,LZIC,NMNAT1,PIK3CD,RBP7,SLC25A33,TMEM201,UBE4B"
TCGA.AA.A010.01A	1	9661114	9770465	10	-1.0398	SMALL-LOSS	FOCAL	2	"PIK3CD,TMEM201"
TCGA.AG.A01W.01A	1	9713113	9998367	33	-0.8215	SMALL-LOSS	FOCAL	4	"CLSTN1,CTNNBIP1,LZIC,PIK3CD"
TCGA.AG.3906.01A	1	9713829	9931988	37	-0.5782	SMALL-LOSS	FOCAL	3	"CLSTN1,CTNNBIP1,PIK3CD"
TCGA.AA.3939.01A	1	9775582	9784811	15	-0.7523	SMALL-LOSS	FOCAL	1	PIK3CD
TCGA.AA.A010.01A	1	9990386	9996526	6	-1.1651	SMALL-LOSS	FOCAL	1	LZIC
TCGA.AA.A00N.01A	1	9990386	10093671	15	-0.7862	SMALL-LOSS	FOCAL	4	"LZIC,NMNAT1,RBP7,UBE4B"
TCGA.AA.3509.01A	1	9990386	10502310	107	-1.1181	SMALL-LOSS	FOCAL	8	"APITD1,APITD1-CORT,KIF1B,LZIC,NMNAT1,PGD,RBP7,UBE4B"
TCGA.AG.A01W.01A	1	10302636	10605612	57	-0.651	SMALL-LOSS	FOCAL	7	"APITD1,APITD1-CORT,CORT,DFFA,KIF1B,PEX14,PGD"
TCGA.AA.A00N.01A	1	10434327	10502310	22	-1.046	SMALL-LOSS	FOCAL	4	"APITD1,APITD1-CORT,KIF1B,PGD"
TCGA.AG.4009.01A	1	10459637	10494639	13	-0.6676	SMALL-LOSS	FOCAL	3	"APITD1,APITD1-CORT,PGD"
TCGA.AG.3909.01A	1	10459637	10529185	22	-1.2709	SMALL-LOSS	FOCAL	5	"APITD1,APITD1-CORT,CORT,DFFA,PGD"
TCGA.AG.A01W.01A	1	10642890	11020307	25	-0.6777	SMALL-LOSS	FOCAL	3	"C1orf127,CASZ1,PEX14"
TCGA.AA.A00N.01A	1	10683024	10753838	23	-0.681	SMALL-LOSS	FOCAL	2	"CASZ1,PEX14"
TCGA.AA.A01Q.01A	1	10707912	10720092	11	-1.2244	SMALL-LOSS	FOCAL	1	CASZ1
TCGA.AG.A01W.01A	1	11049278	11074091	21	-0.6717	SMALL-LOSS	FOCAL	1	TARDBP
TCGA.AA.A00N.01A	1	11073777	11102892	12	-1.2504	SMALL-LOSS	FOCAL	2	"MASP2,TARDBP"
TCGA.AA.A010.01A	1	11080446	11106960	14	-1.0993	SMALL-LOSS	FOCAL	2	"MASP2,TARDBP"
TCGA.AG.A01W.01A	1	11090070	11107096	12	-1.1689	SMALL-LOSS	FOCAL	1	MASP2
TCGA.AA.3930.01A	1	11097719	11106960	7	-0.5521	SMALL-LOSS	FOCAL	1	MASP2
TCGA.AA.A00N.01A	1	11116614	11177006	35	-1.062	SMALL-LOSS	FOCAL	3	"EXOSC10,MTOR,SRM"
TCGA.AG.3906.01A	1	11147465	11596381	88	-0.5246	SMALL-LOSS	FOCAL	5	"ANGPTL7,EXOSC10,MTOR,PTCHD2,UBIAD1"
TCGA.AA.A00D.01A	1	11190534	11269322	18	-0.819	SMALL-LOSS	FOCAL	2	"ANGPTL7,MTOR"
TCGA.AA.A00N.01A	1	11291320	11772354	62	-0.6318	SMALL-LOSS	FOCAL	8	"DRAXIN,FBXO2,FBXO44,FBXO6,MAD2L2,MTOR,PTCHD2,UBIAD1"
TCGA.AG.4009.01A	1	11293409	11333588	14	-0.7089	SMALL-LOSS	FOCAL	2	"MTOR,UBIAD1"
TCGA.AA.3858	1	11444582	11577092	58	-1.2763	SMALL-LOSS	FOCAL	1	PTCHD2
TCGA.AA.A01Q.01A	1	11708704	11740373	18	-0.9038	SMALL-LOSS	FOCAL	4	"FBXO2,FBXO44,FBXO6,MAD2L2"
TCGA.AG.4009.01A	1	11709782	11740373	15	-0.8596	SMALL-LOSS	FOCAL	4	"FBXO2,FBXO44,FBXO6,MAD2L2"
TCGA.AG.A00C.01A	1	11733680	11735099	3	-0.9514	SMALL-LOSS	FOCAL	2	"FBXO6,MAD2L2"
TCGA.AA.A010.01A	1	11980281	12014561	10	-1.1545	SMALL-LOSS	FOCAL	2	"KIAA2013,PLOD1"
TCGA.AG.A01W.01A	1	12004334	12120837	19	-0.6721	SMALL-LOSS	FOCAL	3	"MFN2,MIIP,PLOD1"
TCGA.AG.3906.01A	1	12009780	12049224	18	-0.543	SMALL-LOSS	FOCAL	2	"MFN2,PLOD1"
TCGA.CK.5914.01A	1	12049224	12091275	22	-1.1314	SMALL-LOSS	FOCAL	2	"MFN2,MIIP"
TCGA.AA.A00N.01A	1	12049224	12123587	24	-0.8786	SMALL-LOSS	FOCAL	3	"MFN2,MIIP,TNFRSF8"
TCGA.AG.4009.01A	1	12058806	12089082	15	-0.8563	SMALL-LOSS	FOCAL	2	"MFN2,MIIP"
TCGA.AA.A01Q.01A	1	12058806	12091275	17	-1.0247	SMALL-LOSS	FOCAL	2	"MFN2,MIIP"
TCGA.AG.3906.01A	1	12082120	12815599	111	-0.5996	SMALL-LOSS	FOCAL	8	"AADACL3,AADACL4,C1orf158,DHRS3,MIIP,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AG.A01W.01A	1	12184561	12253588	17	-0.7267	SMALL-LOSS	FOCAL	2	"TNFRSF1B,TNFRSF8"
TCGA.CK.5914.01A	1	12202295	12304286	13	-0.9806	SMALL-LOSS	FOCAL	3	"TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AA.A01Q.01A	1	12248802	12261973	8	-0.943	SMALL-LOSS	FOCAL	1	TNFRSF1B
TCGA.AG.3909.01A	1	12248802	12304286	12	-0.8237	SMALL-LOSS	FOCAL	2	"TNFRSF1B,VPS13D"
TCGA.AA.A00N.01A	1	12248802	12327843	21	-0.5387	SMALL-LOSS	FOCAL	2	"TNFRSF1B,VPS13D"
TCGA.AA.A01Q.01A	1	12628345	12640514	5	-0.5245	SMALL-LOSS	FOCAL	1	DHRS3
TCGA.A6.3808.01A	1	12785152	12943106	23	-0.8675	SMALL-LOSS	FOCAL	10	"AADACL3,C1orf158,HNRNPCL1,HNRNPCL3,HNRNPCL4,PRAMEF1,PRAMEF11,PRAMEF12,PRAMEF2,PRAMEF4"
TCGA.AG.3906.01A	1	12819225	12952762	20	-1.3174	SMALL-LOSS	FOCAL	9	"C1orf158,HNRNPCL1,HNRNPCL3,HNRNPCL4,PRAMEF1,PRAMEF11,PRAMEF12,PRAMEF2,PRAMEF4"
TCGA.AA.A00Q.01A	1	13910319	15545770	31	-0.6645	SMALL-LOSS	FOCAL	5	"C1orf195,KAZN,PDPN,PRDM2,TMEM51"
TCGA.AG.4009.01A	1	14042004	14068448	4	-0.7675	SMALL-LOSS	FOCAL	1	PRDM2
TCGA.AA.3561	1	14104817	14462048	215	-0.9657	SMALL-LOSS	FOCAL	1	PRDM2
TCGA.CA.5797	1	14185581	14346017	115	-0.8707	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5348	1	14406740	14858675	210	-0.5157	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	1	14497556	15106056	263	-0.8263	SMALL-LOSS	FOCAL	1	KAZN
TCGA.AG.3909.01A	1	15382539	15440916	9	-0.8219	SMALL-LOSS	FOCAL	1	KAZN
TCGA.AA.A00D.01A	1	15764884	15813732	22	-0.6445	SMALL-LOSS	FOCAL	3	"CELA2A,CELA2B,CTRC"
TCGA.CK.5914.01A	1	15817700	15959907	33	-0.6999	SMALL-LOSS	FOCAL	5	"AGMAT,CASP9,CELA2B,DDI2,DNAJC16"
TCGA.AA.A00N.01A	1	15834289	15964770	27	-0.6372	SMALL-LOSS	FOCAL	4	"AGMAT,CASP9,DDI2,DNAJC16"
TCGA.AG.A01W.01A	1	15937625	16006456	14	-0.9346	SMALL-LOSS	FOCAL	2	"DDI2,RSC1A1"
TCGA.AA.A010.01A	1	15953116	16047756	16	-0.7979	SMALL-LOSS	FOCAL	3	"DDI2,PLEKHM2,RSC1A1"
TCGA.CK.5914.01A	1	16047756	16073984	21	-0.7773	SMALL-LOSS	FOCAL	3	"PLEKHM2,SLC25A34,TMEM82"
TCGA.AG.A01W.01A	1	16136845	16137752	2	-1.1989	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	16199332	16383300	58	-0.568	SMALL-LOSS	FOCAL	6	"C1orf64,CLCNKA,CLCNKB,HSPB7,SPEN,ZBTB17"
TCGA.AA.A010.01A	1	16242572	16254539	6	-0.8645	SMALL-LOSS	FOCAL	1	SPEN
TCGA.CK.5914.01A	1	16254539	16560060	92	-0.8283	SMALL-LOSS	FOCAL	10	"ARHGEF19,C1orf64,CLCNKA,CLCNKB,EPHA2,FAM131C,HSPB7,RSG1,SPEN,ZBTB17"
TCGA.AA.3861.01A	1	16265750	16377917	37	-0.9505	SMALL-LOSS	FOCAL	6	"C1orf64,CLCNKA,CLCNKB,HSPB7,SPEN,ZBTB17"
TCGA.AA.A01Q.01A	1	16265750	16563084	74	-0.5247	SMALL-LOSS	FOCAL	10	"ARHGEF19,C1orf64,CLCNKA,CLCNKB,EPHA2,FAM131C,HSPB7,RSG1,SPEN,ZBTB17"
TCGA.AA.3862.01A	1	16342023	16377917	28	-1.1142	SMALL-LOSS	FOCAL	3	"CLCNKA,CLCNKB,HSPB7"
TCGA.AA.A010.01A	1	16373001	16389964	20	-0.9184	SMALL-LOSS	FOCAL	2	"CLCNKB,FAM131C"
TCGA.AG.3909.01A	1	16474852	16560060	16	-0.8464	SMALL-LOSS	FOCAL	3	"ARHGEF19,EPHA2,RSG1"
TCGA.AA.A00D.01A	1	16621230	16767205	14	-0.6907	SMALL-LOSS	FOCAL	4	"FBXO42,NECAP2,SPATA21,SZRD1"
TCGA.AA.A00Q.01A	1	16621230	16893651	22	-0.9385	SMALL-LOSS	FOCAL	5	"FBXO42,NBPF1,NECAP2,SPATA21,SZRD1"
TCGA.A6.3808.01A	1	16770088	17249110	17	-0.8272	SMALL-LOSS	FOCAL	5	"CROCC,FAM231A,MST1L,NBPF1,NECAP2"
TCGA.AG.4009.01A	1	16913594	17350416	43	-0.5811	SMALL-LOSS	FOCAL	7	"ATP13A2,CROCC,FAM231A,MFAP2,MST1L,NBPF1,SDHB"
TCGA.CK.5914.01A	1	17248445	17345318	54	-0.785	SMALL-LOSS	FOCAL	4	"ATP13A2,CROCC,MFAP2,SDHB"
TCGA.A6.3808.01A	1	17296233	17331911	25	-0.604	SMALL-LOSS	FOCAL	3	"ATP13A2,CROCC,MFAP2"
TCGA.AA.A01Q.01A	1	17735535	17990925	36	-0.6468	SMALL-LOSS	FOCAL	2	"ARHGEF10L,RCC2"
TCGA.AA.A00N.01A	1	17739522	17907010	10	-0.8888	SMALL-LOSS	FOCAL	2	"ARHGEF10L,RCC2"
TCGA.AA.A010.01A	1	17739522	17907010	10	-1.21	SMALL-LOSS	FOCAL	2	"ARHGEF10L,RCC2"
TCGA.AG.3906.01A	1	17907010	18809906	39	-0.6687	SMALL-LOSS	FOCAL	4	"ACTL8,ARHGEF10L,IGSF21,KLHDC7A"
TCGA.AA.3522	1	18690612	18696134	5	-0.9606	SMALL-LOSS	FOCAL	1	IGSF21
TCGA.AG.A01L.01A	1	18958042	19027135	5	-0.7037	SMALL-LOSS	FOCAL	1	PAX7
TCGA.AG.3906.01A	1	19062075	19438969	46	-0.6017	SMALL-LOSS	FOCAL	5	"ALDH4A1,IFFO2,PAX7,TAS1R2,UBR4"
TCGA.AG.3906.01A	1	19440171	19491242	44	-0.8723	SMALL-LOSS	FOCAL	1	UBR4
TCGA.AA.A00L.01A	1	19473273	19479754	7	-0.9342	SMALL-LOSS	FOCAL	1	UBR4
TCGA.AG.3906.01A	1	19491716	19614962	66	-0.602	SMALL-LOSS	FOCAL	4	"AKR7A3,EMC1,MRTO4,UBR4"
TCGA.CK.5914.01A	1	19523587	19655022	63	-0.6314	SMALL-LOSS	FOCAL	6	"AKR7A2,AKR7A3,EMC1,MRTO4,PQLC2,UBR4"
TCGA.AG.3909.01A	1	19581205	19683864	37	-0.8802	SMALL-LOSS	FOCAL	5	"AKR7A2,AKR7A3,CAPZB,MRTO4,PQLC2"
TCGA.AG.4009.01A	1	19612334	19653669	14	-0.5966	SMALL-LOSS	FOCAL	3	"AKR7A2,AKR7A3,PQLC2"
TCGA.AG.3906.01A	1	19651941	19948521	16	-0.6216	SMALL-LOSS	FOCAL	4	"CAPZB,MINOS1,MINOS1-NBL1,PQLC2"
TCGA.CK.5914.01A	1	19671616	20009491	21	-0.6594	SMALL-LOSS	FOCAL	6	"CAPZB,HTR6,MINOS1,MINOS1-NBL1,NBL1,TMCO4"
TCGA.AG.4009.01A	1	19952792	19992195	4	-0.9138	SMALL-LOSS	FOCAL	4	"HTR6,MINOS1,MINOS1-NBL1,NBL1"
TCGA.AG.A008.01A	1	20071978	20140890	8	-1.0093	SMALL-LOSS	FOCAL	2	"RNF186,TMCO4"
TCGA.CK.5914.01A	1	20082076	20305165	20	-0.5296	SMALL-LOSS	FOCAL	5	"OTUD3,PLA2G2A,PLA2G2E,RNF186,TMCO4"
TCGA.AA.A00N.01A	1	20216850	20232873	6	-0.9658	SMALL-LOSS	FOCAL	1	OTUD3
TCGA.AG.A008.01A	1	20216850	20412529	16	-0.6952	SMALL-LOSS	FOCAL	4	"OTUD3,PLA2G2A,PLA2G2E,PLA2G5"
TCGA.AG.3906.01A	1	20223992	20305165	13	-0.9126	SMALL-LOSS	FOCAL	3	"OTUD3,PLA2G2A,PLA2G2E"
TCGA.AA.A00F.01A	1	20411242	20474636	12	-0.5209	SMALL-LOSS	FOCAL	3	"PLA2G2D,PLA2G2F,PLA2G5"
TCGA.AG.A008.01A	1	20416251	20445920	6	-1.0172	SMALL-LOSS	FOCAL	2	"PLA2G2D,PLA2G5"
TCGA.AG.3891.01A	1	20656626	20680243	3	-1.0061	SMALL-LOSS	FOCAL	1	VWA5B1
TCGA.AA.A010.01A	1	21036083	21091818	18	-1.0842	SMALL-LOSS	FOCAL	3	"HP1BP3,KIF17,SH2D5"
TCGA.AG.4009.01A	1	21036083	21155593	26	-0.725	SMALL-LOSS	FOCAL	4	"EIF4G3,HP1BP3,KIF17,SH2D5"
TCGA.AA.A00N.01A	1	21071283	21097385	8	-0.9985	SMALL-LOSS	FOCAL	1	HP1BP3
TCGA.AA.A00L.01A	1	21094026	21221822	27	-0.8129	SMALL-LOSS	FOCAL	2	"EIF4G3,HP1BP3"
TCGA.CK.5914.01A	1	21102375	21174217	13	-1.2627	SMALL-LOSS	FOCAL	2	"EIF4G3,HP1BP3"
TCGA.A6.6653	1	21688140	21737465	14	-0.8959	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	21805798	21809672	5	-1.2399	SMALL-LOSS	FOCAL	1	NBPF3
TCGA.CK.5914.01A	1	21807441	22029956	45	-1.0087	SMALL-LOSS	FOCAL	4	"ALPL,NBPF3,RAP1GAP,USP48"
TCGA.AA.A010.01A	1	21924126	21929278	6	-0.7249	SMALL-LOSS	FOCAL	1	RAP1GAP
TCGA.AA.A01Q.01A	1	21924457	21946429	19	-1.1374	SMALL-LOSS	FOCAL	1	RAP1GAP
TCGA.AA.A00N.01A	1	21935285	22021507	20	-0.8198	SMALL-LOSS	FOCAL	2	"RAP1GAP,USP48"
TCGA.AG.A01W.01A	1	22030015	22035832	7	-1.0549	SMALL-LOSS	FOCAL	1	USP48
TCGA.AG.A01W.01A	1	22059189	22690473	51	-0.7669	SMALL-LOSS	FOCAL	7	"CDC42,CELA3A,CELA3B,HSPG2,LDLRAD2,USP48,WNT4"
TCGA.CK.5914.01A	1	22150090	22222621	63	-0.9632	SMALL-LOSS	FOCAL	2	"HSPG2,LDLRAD2"
TCGA.AA.A01Q.01A	1	22150577	22205438	51	-0.5811	SMALL-LOSS	FOCAL	2	"HSPG2,LDLRAD2"
TCGA.AA.A01Q.01A	1	22206549	22222621	10	-0.9185	SMALL-LOSS	FOCAL	1	HSPG2
TCGA.G4.6294	1	22296306	22330538	10	-1.1356	SMALL-LOSS	FOCAL	2	"CELA3A,CELA3B"
TCGA.AA.A010.01A	1	22412892	22912935	28	-0.543	SMALL-LOSS	FOCAL	4	"CDC42,EPHA8,WNT4,ZBTB40"
TCGA.AA.3858	1	22644856	22740364	36	-1.2098	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3858	1	22780926	22829422	11	-1.059	SMALL-LOSS	FOCAL	1	ZBTB40
TCGA.AG.A01W.01A	1	22836647	23095426	15	-0.7394	SMALL-LOSS	FOCAL	6	"C1QA,C1QB,C1QC,EPHA8,EPHB2,ZBTB40"
TCGA.AA.A01Q.01A	1	22895718	22928083	14	-0.9162	SMALL-LOSS	FOCAL	1	EPHA8
TCGA.CK.5914.01A	1	22895718	23189490	24	-0.6632	SMALL-LOSS	FOCAL	5	"C1QA,C1QB,C1QC,EPHA8,EPHB2"
TCGA.CK.5914.01A	1	23519587	23650030	7	-0.5401	SMALL-LOSS	FOCAL	2	"HNRNPR,HTR1D"
TCGA.AA.A00N.01A	1	23647989	23693517	8	-1.3058	SMALL-LOSS	FOCAL	2	"HNRNPR,ZNF436"
TCGA.AG.A01W.01A	1	23708908	23992720	31	-0.7449	SMALL-LOSS	FOCAL	4	"ASAP3,E2F2,ID3,TCEA3"
TCGA.F4.6570	1	23743697	24148987	78	-0.5348	SMALL-LOSS	FOCAL	10	"ASAP3,E2F2,GALE,HMGCL,ID3,LYPLA2,PITHD1,RPL11,TCEA3,TCEB3"
TCGA.AG.A01W.01A	1	24007161	24062173	13	-0.7269	SMALL-LOSS	FOCAL	1	RPL11
TCGA.AG.3909.01A	1	24019050	24085961	14	-0.8129	SMALL-LOSS	FOCAL	2	"RPL11,TCEB3"
TCGA.AA.A00N.01A	1	24019050	24298293	52	-1.2309	SMALL-LOSS	FOCAL	10	"CNR2,FUCA1,GALE,HMGCL,LYPLA2,PITHD1,PNRC2,RPL11,SRSF10,TCEB3"
TCGA.AG.A01W.01A	1	24273211	24298719	18	-0.9407	SMALL-LOSS	FOCAL	2	"PNRC2,SRSF10"
TCGA.AA.3982	1	24288183	24290789	5	-0.9387	SMALL-LOSS	FOCAL	1	PNRC2
TCGA.AG.3909.01A	1	24301417	24401768	15	-0.7839	SMALL-LOSS	FOCAL	2	"MYOM3,SRSF10"
TCGA.AG.A01L.01A	1	24400599	24413107	9	-0.733	SMALL-LOSS	FOCAL	1	MYOM3
TCGA.AA.A00N.01A	1	24507174	24663526	7	-0.8834	SMALL-LOSS	FOCAL	2	"GRHL3,IFNLR1"
TCGA.CK.5914.01A	1	24507174	24663526	7	-0.9798	SMALL-LOSS	FOCAL	2	"GRHL3,IFNLR1"
TCGA.AA.A00D.01A	1	24727745	24790473	11	-0.9536	SMALL-LOSS	FOCAL	2	"NIPAL3,STPG1"
TCGA.CK.5914.01A	1	24840811	24979355	15	-1.0243	SMALL-LOSS	FOCAL	3	"NCMAP,RCAN3,SRRM1"
TCGA.AA.A00N.01A	1	24969730	25688940	57	-0.6644	SMALL-LOSS	FOCAL	8	"CLIC4,RHCE,RHD,RSRP1,RUNX3,SRRM1,SYF2,TMEM50A"
TCGA.AA.A010.01A	1	24972433	25256031	28	-0.5914	SMALL-LOSS	FOCAL	3	"CLIC4,RUNX3,SRRM1"
TCGA.AA.3861.01A	1	25228571	25687083	23	-1.3061	SMALL-LOSS	FOCAL	5	"RHD,RSRP1,RUNX3,SYF2,TMEM50A"
TCGA.AA.3862.01A	1	25233773	25687083	30	-1.1573	SMALL-LOSS	FOCAL	5	"RHD,RSRP1,RUNX3,SYF2,TMEM50A"
TCGA.CK.5914.01A	1	25549705	25598990	12	-1.2193	SMALL-LOSS	FOCAL	3	"RHD,RSRP1,SYF2"
TCGA.AA.A01Q.01A	1	25880365	25893300	8	-0.9028	SMALL-LOSS	FOCAL	1	LDLRAP1
TCGA.CK.5914.01A	1	26109048	26190022	23	-0.7251	SMALL-LOSS	FOCAL	5	"AUNIP,MAN1C1,MTFR1L,PAQR7,SEPN1"
TCGA.AA.A00N.01A	1	26127497	26212165	22	-0.8379	SMALL-LOSS	FOCAL	5	"AUNIP,MTFR1L,PAQR7,SEPN1,STMN1"
TCGA.AG.3909.01A	1	26150083	26231060	14	-1.2725	SMALL-LOSS	FOCAL	4	"AUNIP,MTFR1L,PAQR7,STMN1"
TCGA.AG.A01W.01A	1	26244859	26501829	59	-0.5275	SMALL-LOSS	FOCAL	7	"EXTL1,FAM110D,PAFAH2,PDIK1L,SLC30A2,TRIM63,ZNF593"
TCGA.AA.A01Q.01A	1	26356915	26380349	17	-0.9585	SMALL-LOSS	FOCAL	3	"EXTL1,SLC30A2,TRIM63"
TCGA.AA.A010.01A	1	26393800	26508302	10	-1.0013	SMALL-LOSS	FOCAL	5	"CNKSR1,FAM110D,PDIK1L,TRIM63,ZNF593"
TCGA.AA.3858	1	26402819	26527162	26	-1.1622	SMALL-LOSS	FOCAL	5	"CATSPER4,CNKSR1,FAM110D,PDIK1L,ZNF593"
TCGA.AG.A01W.01A	1	26562053	26655986	22	-1.0256	SMALL-LOSS	FOCAL	5	"AIM1L,CD52,CEP85,SH3BGRL3,UBXN11"
TCGA.AA.A02K.01A	1	26606590	26629242	13	-0.7747	SMALL-LOSS	FOCAL	2	"SH3BGRL3,UBXN11"
TCGA.AA.A01Q.01A	1	26799910	26887956	20	-0.6003	SMALL-LOSS	FOCAL	2	"HMGN2,RPS6KA1"
TCGA.AA.A010.01A	1	26863351	26883442	12	-0.8527	SMALL-LOSS	FOCAL	1	RPS6KA1
TCGA.CK.5914.01A	1	26863351	26887956	16	-0.7068	SMALL-LOSS	FOCAL	1	RPS6KA1
TCGA.AA.3858	1	27042016	27236211	14	-0.8408	SMALL-LOSS	FOCAL	6	"ARID1A,GPATCH3,GPN2,PIGV,SFN,ZDHHC18"
TCGA.AG.A01W.01A	1	27088748	27112461	9	-1.1659	SMALL-LOSS	FOCAL	1	ARID1A
TCGA.AA.A010.01A	1	27117259	27180180	10	-1.1506	SMALL-LOSS	FOCAL	2	"PIGV,ZDHHC18"
TCGA.AG.4009.01A	1	27608662	27620502	5	-1.0128	SMALL-LOSS	FOCAL	1	WDTC1
TCGA.CK.5914.01A	1	27608662	27685213	40	-0.878	SMALL-LOSS	FOCAL	4	"MAP3K6,SYTL1,TMEM222,WDTC1"
TCGA.AA.A01Q.01A	1	27671785	27697032	31	-1.147	SMALL-LOSS	FOCAL	3	"FCN3,MAP3K6,SYTL1"
TCGA.AA.A02K.01A	1	27680165	27690361	17	-0.6513	SMALL-LOSS	FOCAL	2	"MAP3K6,SYTL1"
TCGA.AF.3914.01A	1	27682457	27701168	24	-1.0438	SMALL-LOSS	FOCAL	2	"FCN3,MAP3K6"
TCGA.AG.4009.01A	1	27684620	27691083	12	-1.0025	SMALL-LOSS	FOCAL	1	MAP3K6
TCGA.AA.A00L.01A	1	27685213	27690436	10	-0.8754	SMALL-LOSS	FOCAL	1	MAP3K6
TCGA.CK.5914.01A	1	27699595	27721741	13	-0.8603	SMALL-LOSS	FOCAL	3	"CD164L2,FCN3,GPR3"
TCGA.AA.A010.01A	1	27709584	27721741	4	-0.8614	SMALL-LOSS	FOCAL	2	"CD164L2,GPR3"
TCGA.AG.4009.01A	1	27873833	28060492	17	-0.6023	SMALL-LOSS	FOCAL	4	"AHDC1,FAM76A,FGR,IFI6"
TCGA.CK.5914.01A	1	27873833	28233387	51	-0.942	SMALL-LOSS	FOCAL	8	"AHDC1,FAM76A,FGR,IFI6,PPP1R8,RPA2,STX12,THEMIS2"
TCGA.AA.A010.01A	1	28165161	28233387	17	-0.7898	SMALL-LOSS	FOCAL	3	"PPP1R8,RPA2,THEMIS2"
TCGA.AG.4009.01A	1	28173473	28206137	4	-0.8955	SMALL-LOSS	FOCAL	2	"PPP1R8,THEMIS2"
TCGA.AG.3906.01A	1	28233387	28605567	47	-0.5662	SMALL-LOSS	FOCAL	8	"ATPIF1,DNAJC8,EYA3,PTAFR,RPA2,SESN2,SMPDL3B,XKR8"
TCGA.AG.A01W.01A	1	28812300	28909568	12	-1.0887	SMALL-LOSS	FOCAL	3	"PHACTR4,RCC1,TRNAU1AP"
TCGA.AA.A00N.01A	1	28815623	28931832	31	-0.9336	SMALL-LOSS	FOCAL	5	"PHACTR4,RAB42,RCC1,TAF12,TRNAU1AP"
TCGA.AA.A010.01A	1	28817406	28864292	13	-0.7983	SMALL-LOSS	FOCAL	2	"PHACTR4,RCC1"
TCGA.CK.5914.01A	1	28819474	28879560	12	-0.7934	SMALL-LOSS	FOCAL	3	"PHACTR4,RCC1,TRNAU1AP"
TCGA.AG.3909.01A	1	28862341	28920272	17	-0.9709	SMALL-LOSS	FOCAL	3	"RAB42,RCC1,TRNAU1AP"
TCGA.AA.A010.01A	1	28893758	29019412	19	-1.114	SMALL-LOSS	FOCAL	4	"GMEB1,RAB42,TAF12,TRNAU1AP"
TCGA.CK.5914.01A	1	28929982	29447380	42	-0.6466	SMALL-LOSS	FOCAL	6	"EPB41,GMEB1,OPRD1,TAF12,TMEM200B,YTHDF2"
TCGA.AG.3906.01A	1	29040580	29526968	35	-0.5559	SMALL-LOSS	FOCAL	7	"EPB41,GMEB1,MECR,OPRD1,SRSF4,TMEM200B,YTHDF2"
TCGA.AA.A00N.01A	1	29064086	29189207	8	-1.0828	SMALL-LOSS	FOCAL	2	"OPRD1,YTHDF2"
TCGA.AG.3909.01A	1	29064754	29095352	4	-1.1126	SMALL-LOSS	FOCAL	1	YTHDF2
TCGA.AA.A010.01A	1	29542466	29585724	6	-1.2621	SMALL-LOSS	FOCAL	2	"MECR,PTPRU"
TCGA.AG.3909.01A	1	29581740	29587125	4	-1.0872	SMALL-LOSS	FOCAL	1	PTPRU
TCGA.AG.3906.01A	1	29585000	31210402	32	-0.5781	SMALL-LOSS	FOCAL	3	"LAPTM5,MATN1,PTPRU"
TCGA.AG.A016.01A	1	29637178	31215263	19	-0.6576	SMALL-LOSS	FOCAL	3	"LAPTM5,MATN1,PTPRU"
TCGA.D5.6531	1	30540582	31041915	257	-1.1669	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3518	1	30739298	30739795	3	-1.1978	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	1	30901512	30904196	3	-1.1925	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	1	31873369	31931214	41	-0.8566	SMALL-LOSS	FOCAL	1	SERINC2
TCGA.AA.A010.01A	1	31882605	31902192	9	-1.2388	SMALL-LOSS	FOCAL	1	SERINC2
TCGA.AG.3909.01A	1	32042722	32087030	10	-0.7953	SMALL-LOSS	FOCAL	2	"HCRTR1,TINAGL1"
TCGA.AG.4009.01A	1	32044740	32051332	5	-0.7121	SMALL-LOSS	FOCAL	1	TINAGL1
TCGA.AA.A00N.01A	1	32044740	32087030	9	-0.7844	SMALL-LOSS	FOCAL	2	"HCRTR1,TINAGL1"
TCGA.AA.A01Q.01A	1	32044740	32098708	15	-0.5612	SMALL-LOSS	FOCAL	3	"HCRTR1,PEF1,TINAGL1"
TCGA.CK.5914.01A	1	32044740	32497078	114	-0.8332	SMALL-LOSS	FOCAL	8	"ADGRB2,COL16A1,HCRTR1,KHDRBS1,PEF1,PTP4A2,SPOCD1,TINAGL1"
TCGA.AG.3909.01A	1	32137989	32224836	49	-0.6833	SMALL-LOSS	FOCAL	2	"ADGRB2,COL16A1"
TCGA.AA.A00N.01A	1	32159677	32224836	33	-0.5959	SMALL-LOSS	FOCAL	2	"ADGRB2,COL16A1"
TCGA.AA.A01Q.01A	1	32193004	32221549	22	-0.9187	SMALL-LOSS	FOCAL	1	ADGRB2
TCGA.AA.A010.01A	1	32201127	32256205	17	-1.2841	SMALL-LOSS	FOCAL	2	"ADGRB2,SPOCD1"
TCGA.AA.A00N.01A	1	32631669	32659622	13	-0.6721	SMALL-LOSS	FOCAL	2	"KPNA6,TXLNA"
TCGA.AA.A00N.01A	1	32689607	32833903	34	-0.9262	SMALL-LOSS	FOCAL	8	"BSDC1,EIF3I,FAM167B,FAM229A,HDAC1,LCK,MARCKSL1,TSSK3"
TCGA.AG.3909.01A	1	32739912	32833903	22	-0.9007	SMALL-LOSS	FOCAL	6	"BSDC1,FAM229A,HDAC1,LCK,MARCKSL1,TSSK3"
TCGA.AA.A010.01A	1	32768175	32833903	17	-0.9534	SMALL-LOSS	FOCAL	5	"BSDC1,FAM229A,HDAC1,MARCKSL1,TSSK3"
TCGA.AA.A01Q.01A	1	32790017	32829169	13	-0.6987	SMALL-LOSS	FOCAL	4	"FAM229A,HDAC1,MARCKSL1,TSSK3"
TCGA.AG.4009.01A	1	32792493	32833903	11	-0.7064	SMALL-LOSS	FOCAL	5	"BSDC1,FAM229A,HDAC1,MARCKSL1,TSSK3"
TCGA.AF.3914.01A	1	32794619	32829169	9	-0.8246	SMALL-LOSS	FOCAL	4	"FAM229A,HDAC1,MARCKSL1,TSSK3"
TCGA.AG.3909.01A	1	33100285	33122986	4	-1.1013	SMALL-LOSS	FOCAL	2	"RBBP4,ZBTB8OS"
TCGA.AA.A010.01A	1	33145176	33295515	30	-0.5644	SMALL-LOSS	FOCAL	5	"KIAA1522,RBBP4,S100PBP,SYNC,YARS"
TCGA.AG.3909.01A	1	33233416	33276140	15	-1.2275	SMALL-LOSS	FOCAL	2	"KIAA1522,YARS"
TCGA.AG.4009.01A	1	33256708	33282741	5	-0.9726	SMALL-LOSS	FOCAL	1	YARS
TCGA.AG.4009.01A	1	33333769	33363680	7	-1.1837	SMALL-LOSS	FOCAL	3	"FNDC5,HPCA,TMEM54"
TCGA.AA.A010.01A	1	33476334	33502284	6	-0.8019	SMALL-LOSS	FOCAL	1	AK2
TCGA.D5.6924	1	33638735	33642787	3	-0.956	SMALL-LOSS	FOCAL	1	TRIM62
TCGA.AG.4009.01A	1	33736103	33832696	19	-0.8288	SMALL-LOSS	FOCAL	3	"A3GALT2,PHC2,ZNF362"
TCGA.AA.3952	1	33983018	34328647	184	-0.6059	SMALL-LOSS	FOCAL	2	"CSMD2,HMGB4"
TCGA.AA.A00F.01A	1	33998613	35226805	73	-0.531	SMALL-LOSS	FOCAL	5	"C1orf94,CSMD2,GJB4,GJB5,HMGB4"
TCGA.AA.A00N.01A	1	34554527	34643389	3	-0.7972	SMALL-LOSS	FOCAL	2	"C1orf94,CSMD2"
TCGA.AA.3518	1	34839847	34855612	4	-0.8795	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	1	35135181	35350525	11	-0.5291	SMALL-LOSS	FOCAL	6	"DLGAP3,GJA4,GJB3,GJB4,GJB5,SMIM12"
TCGA.AG.3909.01A	1	35222965	35656901	42	-0.7051	SMALL-LOSS	FOCAL	10	"DLGAP3,GJA4,GJB3,GJB4,GJB5,SFPQ,SMIM12,ZMYM1,ZMYM6,ZMYM6NB"
TCGA.AA.A00N.01A	1	35250347	35656901	44	-0.8511	SMALL-LOSS	FOCAL	8	"DLGAP3,GJA4,GJB3,SFPQ,SMIM12,ZMYM1,ZMYM6,ZMYM6NB"
TCGA.CK.5914.01A	1	35332609	35457788	14	-0.641	SMALL-LOSS	FOCAL	3	"DLGAP3,ZMYM6,ZMYM6NB"
TCGA.A6.3808.01A	1	35447517	35656901	31	-1.2767	SMALL-LOSS	FOCAL	4	"SFPQ,ZMYM1,ZMYM6,ZMYM6NB"
TCGA.AG.A01W.01A	1	35453630	35597087	13	-1.0744	SMALL-LOSS	FOCAL	2	"ZMYM1,ZMYM6"
TCGA.CK.5914.01A	1	35496143	35656901	15	-0.9866	SMALL-LOSS	FOCAL	3	"SFPQ,ZMYM1,ZMYM6"
TCGA.AA.A00L.01A	1	35650020	35656049	5	-1.1663	SMALL-LOSS	FOCAL	1	SFPQ
TCGA.AA.A010.01A	1	35650020	35656901	6	-0.9885	SMALL-LOSS	FOCAL	1	SFPQ
TCGA.AG.A01W.01A	1	35679156	35692500	10	-0.7871	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5820	1	35681226	35861848	18	-0.6672	SMALL-LOSS	FOCAL	1	ZMYM4
TCGA.AA.3930.01A	1	35835966	35881017	21	-0.7832	SMALL-LOSS	FOCAL	1	ZMYM4
TCGA.AG.A01W.01A	1	35879476	36055029	28	-0.5325	SMALL-LOSS	FOCAL	4	"KIAA0319L,NCDN,TFAP2E,ZMYM4"
TCGA.AG.3909.01A	1	36019919	36030830	8	-0.7712	SMALL-LOSS	FOCAL	2	"KIAA0319L,NCDN"
TCGA.AA.A00N.01A	1	36019919	36040479	11	-0.8349	SMALL-LOSS	FOCAL	3	"KIAA0319L,NCDN,TFAP2E"
TCGA.AG.A01W.01A	1	36151989	36157640	7	-1.1494	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	36181182	36225966	18	-0.6442	SMALL-LOSS	FOCAL	2	"C1orf216,CLSPN"
TCGA.AA.A00N.01A	1	36235359	36297001	7	-0.6553	SMALL-LOSS	FOCAL	2	"AGO4,CLSPN"
TCGA.A6.3808.01A	1	36448147	36823789	75	-0.9148	SMALL-LOSS	FOCAL	10	"ADPRHL2,AGO3,COL8A2,EVA1B,MAP7D1,SH3D21,STK40,TEKT2,THRAP3,TRAPPC3"
TCGA.AA.A00N.01A	1	36550482	36785246	51	-0.8754	SMALL-LOSS	FOCAL	7	"ADPRHL2,COL8A2,MAP7D1,SH3D21,TEKT2,THRAP3,TRAPPC3"
TCGA.AF.3914.01A	1	36602756	36645758	16	-0.9212	SMALL-LOSS	FOCAL	2	"MAP7D1,TRAPPC3"
TCGA.AA.A010.01A	1	36748168	36785246	17	-0.5216	SMALL-LOSS	FOCAL	2	"SH3D21,THRAP3"
TCGA.AA.A00N.01A	1	36904338	36934710	16	-0.6803	SMALL-LOSS	FOCAL	3	"CSF3R,MRPS15,OSCP1"
TCGA.AG.3909.01A	1	36909530	36927629	8	-1.3104	SMALL-LOSS	FOCAL	2	"MRPS15,OSCP1"
TCGA.CK.5914.01A	1	36921362	36929342	7	-1.0877	SMALL-LOSS	FOCAL	1	MRPS15
TCGA.AA.A010.01A	1	37356494	37978992	14	-0.7514	SMALL-LOSS	FOCAL	3	"GRIK3,MEAF6,ZC3H12A"
TCGA.AG.4009.01A	1	37356494	37978992	13	-0.6892	SMALL-LOSS	FOCAL	3	"GRIK3,MEAF6,ZC3H12A"
TCGA.AA.A00N.01A	1	37499557	38061305	40	-0.9117	SMALL-LOSS	FOCAL	6	"DNALI1,GNL2,GRIK3,MEAF6,SNIP1,ZC3H12A"
TCGA.AG.3909.01A	1	37941131	37967357	10	-0.733	SMALL-LOSS	FOCAL	2	"MEAF6,ZC3H12A"
TCGA.AG.3909.01A	1	38019555	38061305	23	-0.7166	SMALL-LOSS	FOCAL	3	"DNALI1,GNL2,SNIP1"
TCGA.AG.3909.01A	1	38095220	38173925	14	-0.7189	SMALL-LOSS	FOCAL	3	"C1orf109,CDCA8,RSPO1"
TCGA.AA.A00N.01A	1	38095490	38173925	13	-1.0214	SMALL-LOSS	FOCAL	3	"C1orf109,CDCA8,RSPO1"
TCGA.AA.A010.01A	1	38197071	38200882	2	-0.5591	SMALL-LOSS	FOCAL	1	EPHA10
TCGA.AA.A00N.01A	1	38219860	38434974	49	-0.6563	SMALL-LOSS	FOCAL	7	"C1orf122,EPHA10,INPP5B,MANEAL,MTF1,SF3A3,YRDC"
TCGA.AG.4009.01A	1	38261358	38280758	8	-1.0799	SMALL-LOSS	FOCAL	4	"C1orf122,MANEAL,MTF1,YRDC"
TCGA.AG.3909.01A	1	38262357	38274598	6	-0.8522	SMALL-LOSS	FOCAL	3	"C1orf122,MANEAL,YRDC"
TCGA.AG.3909.01A	1	38322886	38356982	18	-0.9167	SMALL-LOSS	FOCAL	2	"INPP5B,MTF1"
TCGA.AG.4009.01A	1	38345735	38356982	8	-0.6889	SMALL-LOSS	FOCAL	1	INPP5B
TCGA.AA.A010.01A	1	38442494	38478420	13	-0.8926	SMALL-LOSS	FOCAL	3	"FHL3,SF3A3,UTP11L"
TCGA.AG.3909.01A	1	38463027	39311559	12	-0.5647	SMALL-LOSS	FOCAL	4	"FHL3,POU3F1,RRAGC,UTP11L"
TCGA.AG.4009.01A	1	38463027	39330268	17	-0.9617	SMALL-LOSS	FOCAL	5	"FHL3,MYCBP,POU3F1,RRAGC,UTP11L"
TCGA.CK.5914.01A	1	38481975	39352129	20	-1.0028	SMALL-LOSS	FOCAL	6	"GJA9,MYCBP,POU3F1,RHBDL2,RRAGC,UTP11L"
TCGA.AA.A01C.01A	1	38511095	39384599	19	-0.6002	SMALL-LOSS	FOCAL	5	"GJA9,MYCBP,POU3F1,RHBDL2,RRAGC"
TCGA.AA.A010.01A	1	39305177	39333202	10	-1.0278	SMALL-LOSS	FOCAL	2	"MYCBP,RRAGC"
TCGA.AG.4009.01A	1	39549854	39719952	4	-0.8297	SMALL-LOSS	FOCAL	1	MACF1
TCGA.AA.A010.01A	1	39549854	39723574	5	-0.9763	SMALL-LOSS	FOCAL	1	MACF1
TCGA.AG.4009.01A	1	39875916	39879326	3	-0.9194	SMALL-LOSS	FOCAL	2	"KIAA0754,MACF1"
TCGA.AG.3909.01A	1	39875916	39889653	6	-1.1903	SMALL-LOSS	FOCAL	2	"KIAA0754,MACF1"
TCGA.CK.5914.01A	1	39875916	39893080	8	-1.0997	SMALL-LOSS	FOCAL	2	"KIAA0754,MACF1"
TCGA.AA.A00N.01A	1	39875916	39898669	14	-1.0596	SMALL-LOSS	FOCAL	2	"KIAA0754,MACF1"
TCGA.AA.A010.01A	1	39893080	39904904	12	-0.8091	SMALL-LOSS	FOCAL	1	MACF1
TCGA.AF.3914.01A	1	39945448	40098267	24	-0.5223	SMALL-LOSS	FOCAL	4	"BMP8A,HEYL,MACF1,PABPC4"
TCGA.CK.5914.01A	1	39945448	40098267	27	-0.6555	SMALL-LOSS	FOCAL	4	"BMP8A,HEYL,MACF1,PABPC4"
TCGA.AA.A01Q.01A	1	40027313	40098267	17	-0.6631	SMALL-LOSS	FOCAL	2	"HEYL,PABPC4"
TCGA.AG.4009.01A	1	40095853	40124813	4	-1.1352	SMALL-LOSS	FOCAL	2	"HEYL,NT5C1A"
TCGA.A6.6653	1	40104583	40152675	12	-0.6946	SMALL-LOSS	FOCAL	3	"HEYL,HPCAL4,NT5C1A"
TCGA.AA.A010.01A	1	40209467	40366456	26	-0.5344	SMALL-LOSS	FOCAL	5	"BMP8B,MYCL,OXCT2,PPIE,TRIT1"
TCGA.AG.4009.01A	1	40363052	40366456	3	-1.2481	SMALL-LOSS	FOCAL	1	MYCL
TCGA.AA.A00L.01A	1	40767421	40775550	11	-0.9319	SMALL-LOSS	FOCAL	1	COL9A2
TCGA.AA.A00N.01A	1	40916582	40980207	13	-1.3203	SMALL-LOSS	FOCAL	3	"EXO5,ZFP69,ZFP69B"
TCGA.AA.A00N.01A	1	40998745	41012182	4	-0.5175	SMALL-LOSS	FOCAL	1	ZNF684
TCGA.AG.3909.01A	1	41282881	41485877	33	-0.6833	SMALL-LOSS	FOCAL	4	"CITED4,CTPS1,KCNQ4,SLFNL1"
TCGA.AA.A00N.01A	1	41298634	41475775	20	-1.0587	SMALL-LOSS	FOCAL	3	"CITED4,CTPS1,KCNQ4"
TCGA.AG.4009.01A	1	41303955	41467792	11	-0.5371	SMALL-LOSS	FOCAL	3	"CITED4,CTPS1,KCNQ4"
TCGA.AA.A010.01A	1	41466644	41473102	5	-1.1362	SMALL-LOSS	FOCAL	1	CTPS1
TCGA.AA.A01Q.01A	1	41945030	41950150	5	-0.778	SMALL-LOSS	FOCAL	1	EDN2
TCGA.AG.3611.01A	1	41976543	41978449	2	-0.8758	SMALL-LOSS	FOCAL	1	HIVEP3
TCGA.AA.3544	1	42470273	42884190	89	-0.8582	SMALL-LOSS	FOCAL	4	"FOXJ3,GUCA2A,GUCA2B,RIMKLA"
TCGA.AG.3906.01A	1	42619068	42664726	12	-0.7324	SMALL-LOSS	FOCAL	3	"FOXJ3,GUCA2A,GUCA2B"
TCGA.AA.A00N.01A	1	42896380	42925243	11	-0.6976	SMALL-LOSS	FOCAL	2	"PPCS,ZMYND12"
TCGA.AG.A01W.01A	1	42993091	43013438	10	-1.1876	SMALL-LOSS	FOCAL	1	CCDC30
TCGA.AA.A010.01A	1	43108094	43126483	9	-0.6863	SMALL-LOSS	FOCAL	2	"CCDC30,PPIH"
TCGA.AG.4009.01A	1	43132959	43227962	23	-0.6681	SMALL-LOSS	FOCAL	4	"CLDN19,P3H1,PPIH,YBX1"
TCGA.AF.3914.01A	1	43203844	43227962	15	-1.1796	SMALL-LOSS	FOCAL	2	"CLDN19,P3H1"
TCGA.AG.3909.01A	1	43212358	43394561	33	-1.1881	SMALL-LOSS	FOCAL	7	"C1orf50,CCDC23,ERMAP,LOC100129924,P3H1,SLC2A1,ZNF691"
TCGA.AA.A01C.01A	1	43217916	43302759	21	-0.9487	SMALL-LOSS	FOCAL	5	"C1orf50,CCDC23,ERMAP,LOC100129924,P3H1"
TCGA.AG.A01W.01A	1	43521066	43560849	18	-0.8189	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00A.01A	1	43630038	43650808	11	-0.9063	SMALL-LOSS	FOCAL	2	"CFAP57,EBNA1BP2"
TCGA.AA.A00D.01A	1	43630038	43675387	17	-0.7861	SMALL-LOSS	FOCAL	2	"CFAP57,EBNA1BP2"
TCGA.AG.3909.01A	1	43772462	43778765	9	-1.1867	SMALL-LOSS	FOCAL	1	TIE1
TCGA.AA.A010.01A	1	43803718	43817884	10	-1.2763	SMALL-LOSS	FOCAL	1	MPL
TCGA.AA.A00N.01A	1	43806006	43826749	10	-0.7616	SMALL-LOSS	FOCAL	2	"CDC20,MPL"
TCGA.AG.3909.01A	1	43806006	43855334	23	-1.2396	SMALL-LOSS	FOCAL	4	"CDC20,ELOVL1,MED8,MPL"
TCGA.AG.4009.01A	1	43812075	43850069	15	-0.847	SMALL-LOSS	FOCAL	4	"CDC20,ELOVL1,MED8,MPL"
TCGA.CK.5914.01A	1	43818141	43853123	16	-0.9474	SMALL-LOSS	FOCAL	4	"CDC20,ELOVL1,MED8,MPL"
TCGA.AG.A01N.01A	1	43851612	43918527	47	-1.2058	SMALL-LOSS	FOCAL	3	"HYI,MED8,SZT2"
TCGA.AA.A010.01A	1	43852219	43853950	4	-1.2755	SMALL-LOSS	FOCAL	1	MED8
TCGA.AA.A01Q.01A	1	43890435	44010702	39	-0.5958	SMALL-LOSS	FOCAL	3	"HYI,PTPRF,SZT2"
TCGA.AA.A010.01A	1	43900006	44044433	30	-0.8594	SMALL-LOSS	FOCAL	3	"HYI,PTPRF,SZT2"
TCGA.AF.3914.01A	1	43906838	43918527	15	-0.9136	SMALL-LOSS	FOCAL	2	"HYI,SZT2"
TCGA.AG.4009.01A	1	43911524	44054351	19	-0.6223	SMALL-LOSS	FOCAL	3	"HYI,PTPRF,SZT2"
TCGA.AA.A00N.01A	1	43911524	44083068	35	-0.5425	SMALL-LOSS	FOCAL	3	"HYI,PTPRF,SZT2"
TCGA.CK.5914.01A	1	43911524	44125927	46	-0.5519	SMALL-LOSS	FOCAL	4	"HYI,KDM4A,PTPRF,SZT2"
TCGA.AG.3909.01A	1	43913198	44086460	38	-0.7698	SMALL-LOSS	FOCAL	3	"HYI,PTPRF,SZT2"
TCGA.AA.A01Q.01A	1	44019124	44083068	20	-1.0106	SMALL-LOSS	FOCAL	1	PTPRF
TCGA.AA.A010.01A	1	44149314	44169656	10	-0.6993	SMALL-LOSS	FOCAL	1	KDM4A
TCGA.AA.A00N.01A	1	44157858	44201887	7	-0.8698	SMALL-LOSS	FOCAL	2	"KDM4A,ST3GAL3"
TCGA.AG.4009.01A	1	44159648	44169656	5	-0.6682	SMALL-LOSS	FOCAL	1	KDM4A
TCGA.AG.A01W.01A	1	44195425	44209208	11	-1.0838	SMALL-LOSS	FOCAL	1	ST3GAL3
TCGA.AA.A00A.01A	1	44201887	44386044	10	-0.8296	SMALL-LOSS	FOCAL	1	ST3GAL3
TCGA.AG.4009.01A	1	44395761	44401258	2	-0.9985	SMALL-LOSS	FOCAL	2	"ARTN,ST3GAL3"
TCGA.AF.3914.01A	1	44395761	44415659	5	-0.895	SMALL-LOSS	FOCAL	3	"ARTN,IPO13,ST3GAL3"
TCGA.AA.A00N.01A	1	44395761	44459496	34	-0.829	SMALL-LOSS	FOCAL	7	"ARTN,ATP6V0B,B4GALT2,CCDC24,DPH2,IPO13,ST3GAL3"
TCGA.AG.4009.01A	1	44436221	44457832	14	-0.8049	SMALL-LOSS	FOCAL	4	"ATP6V0B,B4GALT2,CCDC24,DPH2"
TCGA.AF.3914.01A	1	44441420	44460711	13	-0.8482	SMALL-LOSS	FOCAL	3	"ATP6V0B,B4GALT2,CCDC24"
TCGA.AA.A01Q.01A	1	44441420	44475597	20	-1.1523	SMALL-LOSS	FOCAL	4	"ATP6V0B,B4GALT2,CCDC24,SLC6A9"
TCGA.AG.3909.01A	1	44441420	44687183	32	-0.5962	SMALL-LOSS	FOCAL	7	"ATP6V0B,B4GALT2,CCDC24,DMAP1,ERI3,KLF17,SLC6A9"
TCGA.AG.4009.01A	1	44804666	45101665	9	-0.6486	SMALL-LOSS	FOCAL	2	"ERI3,RNF220"
TCGA.AF.3914.01A	1	44818472	45101180	8	-0.8737	SMALL-LOSS	FOCAL	2	"ERI3,RNF220"
TCGA.AA.A010.01A	1	44877722	45110631	10	-1.0303	SMALL-LOSS	FOCAL	1	RNF220
TCGA.AG.3909.01A	1	44877722	45125797	13	-1.1087	SMALL-LOSS	FOCAL	2	"RNF220,TMEM53"
TCGA.AG.A01W.01A	1	44898385	45005045	24	-0.7478	SMALL-LOSS	FOCAL	1	RNF220
TCGA.AG.A01W.01A	1	45051199	45246799	29	-0.5485	SMALL-LOSS	FOCAL	5	"C1orf228,KIF2C,RNF220,RPS8,TMEM53"
TCGA.AA.A01Q.01A	1	45088335	45116321	9	-0.8489	SMALL-LOSS	FOCAL	1	RNF220
TCGA.AA.A010.01A	1	45155318	45213016	11	-1.2018	SMALL-LOSS	FOCAL	2	"C1orf228,KIF2C"
TCGA.A6.3810.01A	1	45205553	45223202	11	-0.5474	SMALL-LOSS	FOCAL	1	KIF2C
TCGA.AA.A01C.01A	1	45206532	45216073	5	-1.2175	SMALL-LOSS	FOCAL	1	KIF2C
TCGA.AG.3909.01A	1	45242296	45486257	60	-0.8669	SMALL-LOSS	FOCAL	10	"BEST4,BTBD19,EIF2B3,HECTD3,PLK3,PTCH2,RPS8,TCTEX1D4,UROD,ZSWIM5"
TCGA.AA.3980.01A	1	45251729	45288110	19	-0.5492	SMALL-LOSS	FOCAL	5	"BEST4,BTBD19,PLK3,PTCH2,TCTEX1D4"
TCGA.AG.4009.01A	1	45266464	45270896	7	-1.2571	SMALL-LOSS	FOCAL	1	PLK3
TCGA.AF.3914.01A	1	45266464	45392260	30	-0.6924	SMALL-LOSS	FOCAL	5	"BTBD19,EIF2B3,PLK3,PTCH2,TCTEX1D4"
TCGA.AA.3930.01A	1	45267256	45294599	21	-0.6089	SMALL-LOSS	FOCAL	4	"BTBD19,PLK3,PTCH2,TCTEX1D4"
TCGA.AA.A00N.01A	1	45297326	45323325	6	-0.7779	SMALL-LOSS	FOCAL	2	"EIF2B3,PTCH2"
TCGA.AG.4009.01A	1	45297827	45347263	8	-0.7931	SMALL-LOSS	FOCAL	2	"EIF2B3,PTCH2"
TCGA.AA.A010.01A	1	45316548	45392260	8	-1.0407	SMALL-LOSS	FOCAL	1	EIF2B3
TCGA.AA.A00A.01A	1	45345439	45443936	6	-0.8979	SMALL-LOSS	FOCAL	1	EIF2B3
TCGA.AA.A00N.01A	1	45362970	45486257	26	-0.7755	SMALL-LOSS	FOCAL	4	"EIF2B3,HECTD3,UROD,ZSWIM5"
TCGA.AA.3930.01A	1	45474759	45484077	11	-0.7341	SMALL-LOSS	FOCAL	3	"HECTD3,UROD,ZSWIM5"
TCGA.AG.A01W.01A	1	45745568	45856290	29	-0.5471	SMALL-LOSS	FOCAL	4	"HPDL,MUTYH,TESK2,TOE1"
TCGA.AF.3914.01A	1	45960683	45965968	5	-1.3217	SMALL-LOSS	FOCAL	1	MMACHC
TCGA.AG.4009.01A	1	45960683	45972980	6	-0.8433	SMALL-LOSS	FOCAL	1	MMACHC
TCGA.AA.A01Q.01A	1	45976944	45984590	5	-0.6934	SMALL-LOSS	FOCAL	1	PRDX1
TCGA.AG.4009.01A	1	46179890	46211821	7	-1.2872	SMALL-LOSS	FOCAL	1	IPP
TCGA.AG.A01W.01A	1	46441660	46599779	34	-0.6574	SMALL-LOSS	FOCAL	2	"MAST2,PIK3R3"
TCGA.CK.5914.01A	1	46597506	46724287	24	-0.5961	SMALL-LOSS	FOCAL	5	"LURAP1,PIK3R3,POMGNT1,RAD54L,TSPAN1"
TCGA.AA.A01Q.01A	1	46646709	46663337	17	-0.5756	SMALL-LOSS	FOCAL	2	"POMGNT1,TSPAN1"
TCGA.AF.3914.01A	1	46646709	46663337	18	-0.7849	SMALL-LOSS	FOCAL	2	"POMGNT1,TSPAN1"
TCGA.AG.4009.01A	1	46649831	46715622	21	-0.6714	SMALL-LOSS	FOCAL	4	"LURAP1,POMGNT1,RAD54L,TSPAN1"
TCGA.AG.A01W.01A	1	46650355	46916674	37	-0.5991	SMALL-LOSS	FOCAL	8	"FAAH,LRRC41,LURAP1,NSUN4,POMGNT1,RAD54L,TSPAN1,UQCRH"
TCGA.CK.5914.01A	1	46751785	46782139	8	-0.6269	SMALL-LOSS	FOCAL	2	"LRRC41,UQCRH"
TCGA.AA.A01Q.01A	1	46763170	46782139	6	-0.6469	SMALL-LOSS	FOCAL	2	"LRRC41,UQCRH"
TCGA.AA.A010.01A	1	46867716	47138548	49	-0.5247	SMALL-LOSS	FOCAL	7	"ATPAF1,DMBX1,FAAH,KNCN,MKNK1,MOB3C,TEX38"
TCGA.AG.4009.01A	1	46870635	46876405	8	-0.516	SMALL-LOSS	FOCAL	1	FAAH
TCGA.DM.A28H	1	46988612	47000995	11	-0.6676	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	47059712	47183537	27	-1.0417	SMALL-LOSS	FOCAL	5	"ATPAF1,EFCAB14,MKNK1,MOB3C,TEX38"
TCGA.AG.3909.01A	1	47059712	47183537	25	-0.6053	SMALL-LOSS	FOCAL	5	"ATPAF1,EFCAB14,MKNK1,MOB3C,TEX38"
TCGA.AF.3914.01A	1	47075240	47080614	4	-1.0866	SMALL-LOSS	FOCAL	1	MOB3C
TCGA.AA.A00D.01A	1	47150134	47745882	73	-0.766	SMALL-LOSS	FOCAL	9	"CYP4A11,CYP4A22,CYP4B1,CYP4X1,CYP4Z1,EFCAB14,PDZK1IP1,STIL,TAL1"
TCGA.AG.A01W.01A	1	47489354	48473939	34	-0.6133	SMALL-LOSS	FOCAL	10	"CMPK1,CYP4A22,CYP4X1,CYP4Z1,FOXD2,FOXE3,PDZK1IP1,STIL,TAL1,TRABD2B"
TCGA.AA.A010.01A	1	47685375	47905677	27	-0.8964	SMALL-LOSS	FOCAL	5	"CMPK1,FOXD2,FOXE3,STIL,TAL1"
TCGA.CK.5914.01A	1	47745882	47905677	20	-0.579	SMALL-LOSS	FOCAL	4	"CMPK1,FOXD2,FOXE3,STIL"
TCGA.AA.A01C.01A	1	47767869	47903796	10	-0.7654	SMALL-LOSS	FOCAL	4	"CMPK1,FOXD2,FOXE3,STIL"
TCGA.AA.3844	1	48479074	48484050	3	-1.1089	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	1	48688367	48771428	16	-0.9722	SMALL-LOSS	FOCAL	2	"SLC5A9,SPATA6"
TCGA.EI.6881	1	48725095	49331465	216	-0.5594	SMALL-LOSS	FOCAL	3	"AGBL4,BEND5,SPATA6"
TCGA.AA.A00N.01A	1	48764353	48869415	9	-0.7704	SMALL-LOSS	FOCAL	1	SPATA6
TCGA.AG.3909.01A	1	48850905	48918616	8	-0.834	SMALL-LOSS	FOCAL	1	SPATA6
TCGA.A6.2683	1	49031237	49407317	191	-0.8872	SMALL-LOSS	FOCAL	2	"AGBL4,BEND5"
TCGA.AA.3842	1	49129845	49310058	92	-1.0118	SMALL-LOSS	FOCAL	2	"AGBL4,BEND5"
TCGA.AA.A02Y	1	49139530	49171140	22	-0.8533	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.DC.4745	1	49157927	49463800	131	-0.9491	SMALL-LOSS	FOCAL	2	"AGBL4,BEND5"
TCGA.D5.6535	1	49252455	49565392	105	-1.0383	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.AD.6965	1	49268065	49429904	76	-0.805	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.A6.2686	1	49273577	49467061	79	-1.0235	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.AY.5543	1	49282056	49308087	12	-0.6331	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.DM.A28F	1	49398122	50161290	92	-0.767	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.A6.6138	1	49513772	49566556	12	-0.8923	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.A6.6653	1	49565392	49800691	29	-0.6048	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.DM.A28H	1	49665435	50053884	37	-0.7295	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.AY.5543	1	49715271	49823496	18	-0.782	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.G4.6586	1	49721078	49754128	4	-0.5982	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.A6.6653	1	49889905	49997673	6	-0.7372	SMALL-LOSS	FOCAL	1	AGBL4
TCGA.AG.A01W.01A	1	51508185	51660003	32	-0.6986	SMALL-LOSS	FOCAL	1	C1orf185
TCGA.AG.3909.01A	1	52179627	52221910	6	-0.6891	SMALL-LOSS	FOCAL	1	OSBPL9
TCGA.AG.3909.01A	1	52287111	52305859	8	-0.6403	SMALL-LOSS	FOCAL	1	NRD1
TCGA.AG.3909.01A	1	52486548	52530450	10	-1.1986	SMALL-LOSS	FOCAL	3	"BTF3L4,KTI12,TXNDC12"
TCGA.CK.5914.01A	1	52486548	52530450	13	-0.9955	SMALL-LOSS	FOCAL	3	"BTF3L4,KTI12,TXNDC12"
TCGA.AA.3930.01A	1	52703143	52825330	28	-0.5934	SMALL-LOSS	FOCAL	2	"CC2D1B,ZFYVE9"
TCGA.AA.A01F.01A	1	52823955	52824298	2	-1.2686	SMALL-LOSS	FOCAL	1	CC2D1B
TCGA.AG.3909.01A	1	52826046	52847275	9	-0.639	SMALL-LOSS	FOCAL	2	"CC2D1B,ORC1"
TCGA.AF.3914.01A	1	52863310	52882276	12	-0.5881	SMALL-LOSS	FOCAL	2	"ORC1,PRPF38A"
TCGA.AA.A00N.01A	1	53287109	53352576	12	-1.2066	SMALL-LOSS	FOCAL	2	"ZYG11A,ZYG11B"
TCGA.CK.5914.01A	1	53320089	53347103	8	-1.1192	SMALL-LOSS	FOCAL	1	ZYG11A
TCGA.AA.A00N.01A	1	53393013	53416375	4	-0.7066	SMALL-LOSS	FOCAL	1	SCP2
TCGA.AA.3844	1	53510974	53516382	10	-0.5445	SMALL-LOSS	FOCAL	1	SCP2
TCGA.AA.A00N.01A	1	53513471	53547614	13	-0.8447	SMALL-LOSS	FOCAL	2	"PODN,SCP2"
TCGA.AG.3909.01A	1	53516247	53558187	15	-0.5456	SMALL-LOSS	FOCAL	3	"PODN,SCP2,SLC1A7"
TCGA.AG.3891.01A	1	53535433	53571328	17	-0.5495	SMALL-LOSS	FOCAL	2	"PODN,SLC1A7"
TCGA.AA.3930.01A	1	53541487	53559096	12	-1.006	SMALL-LOSS	FOCAL	2	"PODN,SLC1A7"
TCGA.AA.3980.01A	1	53542813	53556247	9	-0.5914	SMALL-LOSS	FOCAL	2	"PODN,SLC1A7"
TCGA.AA.3939.01A	1	53547614	53559096	7	-1.149	SMALL-LOSS	FOCAL	2	"PODN,SLC1A7"
TCGA.AG.3906.01A	1	53553633	53559096	6	-0.9243	SMALL-LOSS	FOCAL	1	SLC1A7
TCGA.CK.5914.01A	1	53666344	53701188	15	-0.9547	SMALL-LOSS	FOCAL	3	"C1orf123,CPT2,MAGOH"
TCGA.AA.3930.01A	1	53736673	54266328	25	-0.541	SMALL-LOSS	FOCAL	4	"DMRTB1,GLIS1,LRP8,NDC1"
TCGA.AG.3906.01A	1	53972244	53995437	5	-0.5216	SMALL-LOSS	FOCAL	1	GLIS1
TCGA.AA.A00N.01A	1	54644784	54871577	29	-0.6839	SMALL-LOSS	FOCAL	3	"CYB5RL,MRPL37,SSBP3"
TCGA.AG.3909.01A	1	54649785	54870481	22	-0.544	SMALL-LOSS	FOCAL	3	"CYB5RL,MRPL37,SSBP3"
TCGA.CK.5914.01A	1	54670664	54870481	22	-0.537	SMALL-LOSS	FOCAL	2	"MRPL37,SSBP3"
TCGA.AF.3914.01A	1	54678122	54870481	17	-0.7398	SMALL-LOSS	FOCAL	2	"MRPL37,SSBP3"
TCGA.AG.3906.01A	1	54717228	54722748	2	-0.9107	SMALL-LOSS	FOCAL	1	SSBP3
TCGA.AA.A00D.01A	1	55066942	55096418	17	-0.7988	SMALL-LOSS	FOCAL	2	"ACOT11,FAM151A"
TCGA.AG.3909.01A	1	55182244	55279470	20	-0.9276	SMALL-LOSS	FOCAL	4	"C1orf177,PARS2,TTC22,TTC4"
TCGA.AA.3850	1	55186661	55191643	5	-0.86365	SMALL-LOSS	FOCAL	1	TTC4
TCGA.AA.A00N.01A	1	55197110	55280540	20	-0.6806	SMALL-LOSS	FOCAL	4	"C1orf177,PARS2,TTC22,TTC4"
TCGA.AG.4009.01A	1	55223390	55282623	13	-0.5539	SMALL-LOSS	FOCAL	3	"C1orf177,PARS2,TTC22"
TCGA.AA.3939.01A	1	55266279	55319678	13	-0.6134	SMALL-LOSS	FOCAL	3	"C1orf177,DHCR24,TTC22"
TCGA.AG.3909.01A	1	55349244	55517901	11	-0.7146	SMALL-LOSS	FOCAL	4	"BSND,DHCR24,PCSK9,TMEM61"
TCGA.AA.A00N.01A	1	55534653	55551577	13	-1.0119	SMALL-LOSS	FOCAL	1	USP24
TCGA.AA.3941	1	55541680	55546894	5	-1.1469	SMALL-LOSS	FOCAL	1	USP24
TCGA.AA.3982	1	55541680	55546894	5	-0.9971	SMALL-LOSS	FOCAL	1	USP24
TCGA.AA.3844	1	55541680	55552568	6	-1.1356	SMALL-LOSS	FOCAL	1	USP24
TCGA.AA.3930.01A	1	55569520	57349122	76	-0.5392	SMALL-LOSS	FOCAL	5	"C1orf168,C8A,PPAP2B,PRKAA2,USP24"
TCGA.AA.A010.01A	1	55598200	55680412	27	-0.601	SMALL-LOSS	FOCAL	1	USP24
TCGA.AA.3864	1	56516423	56535751	6	-1.0782	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3556	1	56951614	58460796	765	-0.7603	SMALL-LOSS	FOCAL	6	"C1orf168,C8A,C8B,DAB1,PPAP2B,PRKAA2"
TCGA.G4.6295	1	57697058	58069522	197	-1.0137	SMALL-LOSS	FOCAL	1	DAB1
TCGA.AF.2693	1	57793947	57796602	4	-1.2057	SMALL-LOSS	FOCAL	1	DAB1
TCGA.AA.3864	1	59126413	59128192	5	-1.3157	SMALL-LOSS	FOCAL	1	MYSM1
TCGA.EI.6508	1	59816275	60142111	90	-0.7407	SMALL-LOSS	FOCAL	1	FGGY
TCGA.AA.A00N.01A	1	60287475	60312669	9	-0.6307	SMALL-LOSS	FOCAL	1	HOOK1
TCGA.AA.A010.01A	1	60294435	60325838	13	-0.7987	SMALL-LOSS	FOCAL	1	HOOK1
TCGA.AA.3509.01A	1	60324043	63048792	147	-0.5957	SMALL-LOSS	FOCAL	10	"C1orf87,CYP2J2,DOCK7,HOOK1,INADL,KANK4,L1TD1,NFIA,TM2D1,USP1"
TCGA.AA.A010.01A	1	60456328	60475995	4	-0.9678	SMALL-LOSS	FOCAL	1	C1orf87
TCGA.AA.3850	1	60600944	61320891	215	-0.64785	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	62905492	62915895	9	-1.0033	SMALL-LOSS	FOCAL	1	USP1
TCGA.CK.5914.01A	1	62905492	62954556	18	-0.9274	SMALL-LOSS	FOCAL	2	"DOCK7,USP1"
TCGA.AA.3941	1	63049081	63069710	8	-0.5529	SMALL-LOSS	FOCAL	2	"ANGPTL3,DOCK7"
TCGA.AA.3941	1	63566914	63612280	24	-0.622	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	64669677	64680471	5	-0.8312	SMALL-LOSS	FOCAL	1	UBE2U
TCGA.AA.A010.01A	1	65156954	65247035	5	-0.6256	SMALL-LOSS	FOCAL	2	"CACHD1,RAVER2"
TCGA.AA.A00N.01A	1	65874272	65897469	7	-1.1424	SMALL-LOSS	FOCAL	3	"DNAJC6,LEPR,LEPROT"
TCGA.AG.3909.01A	1	65874272	66036119	8	-0.7233	SMALL-LOSS	FOCAL	3	"DNAJC6,LEPR,LEPROT"
TCGA.AA.3850	1	66253872	67040874	353	-0.61955	SMALL-LOSS	FOCAL	2	"PDE4B,SGIP1"
TCGA.AA.3941	1	66309205	67040874	341	-0.6621	SMALL-LOSS	FOCAL	2	"PDE4B,SGIP1"
TCGA.AA.3982	1	66457785	66504853	18	-0.5674	SMALL-LOSS	FOCAL	1	PDE4B
TCGA.AA.3844	1	66974213	67029557	35	-0.6276	SMALL-LOSS	FOCAL	1	SGIP1
TCGA.AA.A00N.01A	1	67194900	67236018	8	-0.5989	SMALL-LOSS	FOCAL	2	"SGIP1,TCTEX1D1"
TCGA.CK.5914.01A	1	67199384	67568919	59	-0.5326	SMALL-LOSS	FOCAL	7	"C1orf141,INSL5,MIER1,SGIP1,SLC35D1,TCTEX1D1,WDR78"
TCGA.AA.A00N.01A	1	67391773	67411786	5	-1.2524	SMALL-LOSS	FOCAL	1	MIER1
TCGA.AA.A01Q.01A	1	67512920	67518446	5	-0.5887	SMALL-LOSS	FOCAL	1	SLC35D1
TCGA.AA.3509.01A	1	67577207	68697829	56	-0.6687	SMALL-LOSS	FOCAL	8	"C1orf141,DIRAS3,GADD45A,GNG12,IL12RB2,IL23R,SERBP1,WLS"
TCGA.AA.3982	1	67604614	67605133	3	-1.0904	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	67878840	67891768	6	-1.1299	SMALL-LOSS	FOCAL	1	SERBP1
TCGA.AA.3941	1	68481737	68549594	18	-1.1129	SMALL-LOSS	FOCAL	1	DIRAS3
TCGA.AA.3850	1	68939715	70521913	393	-0.74375	SMALL-LOSS	FOCAL	2	"DEPDC1,LRRC7"
TCGA.AZ.4682	1	68963396	71969016	786	-0.727	SMALL-LOSS	FOCAL	9	"ANKRD13C,CTH,HHLA3,LRRC40,LRRC7,NEGR1,PTGER3,SRSF11,ZRANB2"
TCGA.AA.3844	1	69068830	69886891	155	-0.5349	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28H	1	69086696	69995022	189	-0.6352	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	1	70641476	71437315	53	-0.7116	SMALL-LOSS	FOCAL	6	"ANKRD13C,CTH,HHLA3,LRRC40,PTGER3,SRSF11"
TCGA.CM.6677	1	70798735	72019013	371	-0.5896	SMALL-LOSS	FOCAL	6	"ANKRD13C,CTH,HHLA3,NEGR1,PTGER3,ZRANB2"
TCGA.D5.5538	1	71340069	72759523	372	-0.6042	SMALL-LOSS	FOCAL	3	"NEGR1,PTGER3,ZRANB2"
TCGA.AA.A00L.01A	1	71477891	75175765	71	-0.7887	SMALL-LOSS	FOCAL	9	"CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LRRIQ3,NEGR1,PTGER3,TNNI3K,ZRANB2"
TCGA.AG.3906.01A	1	71531322	72747991	17	-0.665	SMALL-LOSS	FOCAL	2	"NEGR1,ZRANB2"
TCGA.AA.3850	1	71569332	76109572	1107	-0.86975	SMALL-LOSS	FOCAL	10	"CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LHX8,LRRIQ3,NEGR1,SLC44A5,TNNI3K,TYW3"
TCGA.AA.3941	1	72034251	75714553	908	-0.8163	SMALL-LOSS	FOCAL	10	"CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LHX8,LRRIQ3,NEGR1,SLC44A5,TNNI3K,TYW3"
TCGA.AA.3982	1	73018522	74115103	240	-0.5595	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	1	74127160	76108157	517	-0.5884	SMALL-LOSS	FOCAL	9	"CRYZ,ERICH3,FPGT,FPGT-TNNI3K,LHX8,LRRIQ3,SLC44A5,TNNI3K,TYW3"
TCGA.AA.A00N.01A	1	74665326	74716309	8	-1.1151	SMALL-LOSS	FOCAL	3	"FPGT,FPGT-TNNI3K,TNNI3K"
TCGA.CK.5914.01A	1	74665326	74716309	8	-0.7579	SMALL-LOSS	FOCAL	3	"FPGT,FPGT-TNNI3K,TNNI3K"
TCGA.AA.A00D.01A	1	75005861	75097349	11	-1.2287	SMALL-LOSS	FOCAL	3	"ERICH3,FPGT-TNNI3K,TNNI3K"
TCGA.AA.A01Q.01A	1	75097349	75114856	6	-0.7185	SMALL-LOSS	FOCAL	1	ERICH3
TCGA.AA.A01F.01A	1	75677095	75708534	15	-0.6313	SMALL-LOSS	FOCAL	1	SLC44A5
TCGA.AA.3509.01A	1	75766234	76333139	30	-0.957	SMALL-LOSS	FOCAL	4	"ACADM,MSH4,RABGGTB,SLC44A5"
TCGA.AA.A00N.01A	1	76194034	76205618	5	-1.3186	SMALL-LOSS	FOCAL	1	ACADM
TCGA.AA.A00L.01A	1	76387715	77515896	11	-0.9542	SMALL-LOSS	FOCAL	3	"ASB17,ST6GALNAC3,ST6GALNAC5"
TCGA.AA.3941	1	76663419	77403353	312	-0.6063	SMALL-LOSS	FOCAL	2	"ST6GALNAC3,ST6GALNAC5"
TCGA.AA.3850	1	76764653	77461734	282	-0.72115	SMALL-LOSS	FOCAL	2	"ST6GALNAC3,ST6GALNAC5"
TCGA.AA.3509.01A	1	77747962	78401491	72	-0.7673	SMALL-LOSS	FOCAL	5	"AK5,FAM73A,NEXN,USP33,ZZZ3"
TCGA.AG.A01W.01A	1	77949957	78017881	20	-0.6608	SMALL-LOSS	FOCAL	1	AK5
TCGA.AG.3909.01A	1	78206507	78340482	17	-0.745	SMALL-LOSS	FOCAL	2	"FAM73A,USP33"
TCGA.AA.A00N.01A	1	78248901	78325671	10	-1.0213	SMALL-LOSS	FOCAL	1	FAM73A
TCGA.CK.5914.01A	1	78248901	78340482	15	-0.7705	SMALL-LOSS	FOCAL	1	FAM73A
TCGA.AG.A00C.01A	1	78383243	78444522	24	-0.6751	SMALL-LOSS	FOCAL	2	"FUBP1,NEXN"
TCGA.AA.3850	1	78772008	81680851	957	-0.87175	SMALL-LOSS	FOCAL	4	"ADGRL4,IFI44,IFI44L,PTGFR"
TCGA.AA.3941	1	78789573	84444765	1919	-0.5949	SMALL-LOSS	FOCAL	6	"ADGRL2,ADGRL4,IFI44,IFI44L,PTGFR,TTLL7"
TCGA.AA.3982	1	78815798	83829356	1678	-0.5301	SMALL-LOSS	FOCAL	5	"ADGRL2,ADGRL4,IFI44,IFI44L,PTGFR"
TCGA.G4.6322	1	78912080	80146950	382	-0.5216	SMALL-LOSS	FOCAL	4	"ADGRL4,IFI44,IFI44L,PTGFR"
TCGA.AA.A00D.01A	1	79095365	84609994	54	-0.8959	SMALL-LOSS	FOCAL	6	"ADGRL2,ADGRL4,IFI44,IFI44L,PRKACB,TTLL7"
TCGA.AZ.4682	1	79324931	83147419	1311	-0.7621	SMALL-LOSS	FOCAL	2	"ADGRL2,ADGRL4"
TCGA.DM.A1DB	1	81986457	82315272	121	-0.9272	SMALL-LOSS	FOCAL	1	ADGRL2
TCGA.DM.A28H	1	82306604	83863395	488	-0.5868	SMALL-LOSS	FOCAL	1	ADGRL2
TCGA.AA.3850	1	82901717	83975530	346	-1.01225	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6652	1	83069231	83437199	169	-0.7918	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4682	1	83545398	84380879	283	-0.6672	SMALL-LOSS	FOCAL	1	TTLL7
TCGA.AA.3982	1	83834901	83992960	36	-0.6677	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4615	1	83964563	84146340	79	-0.6968	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4615	1	84681213	84947176	118	-0.5882	SMALL-LOSS	FOCAL	4	"DNASE2B,PRKACB,RPF1,SAMD13"
TCGA.CK.5914.01A	1	84700845	84768842	4	-0.7523	SMALL-LOSS	FOCAL	2	"PRKACB,SAMD13"
TCGA.A6.3808.01A	1	84880243	85096256	31	-0.8675	SMALL-LOSS	FOCAL	4	"CTBS,DNASE2B,GNG5,RPF1"
TCGA.CK.5914.01A	1	84946566	85036227	27	-0.7409	SMALL-LOSS	FOCAL	3	"CTBS,GNG5,RPF1"
TCGA.AA.A00N.01A	1	84948551	85097246	29	-0.7649	SMALL-LOSS	FOCAL	3	"CTBS,GNG5,RPF1"
TCGA.AG.3909.01A	1	84955262	84998516	12	-0.8461	SMALL-LOSS	FOCAL	2	"GNG5,RPF1"
TCGA.AG.3909.01A	1	85016068	85036227	7	-0.8459	SMALL-LOSS	FOCAL	1	CTBS
TCGA.AG.3909.01A	1	85462429	85510769	10	-0.7215	SMALL-LOSS	FOCAL	2	"MCOLN2,MCOLN3"
TCGA.CK.5914.01A	1	85462429	85510769	10	-0.5493	SMALL-LOSS	FOCAL	2	"MCOLN2,MCOLN3"
TCGA.AG.3909.01A	1	85655733	85736260	7	-0.9255	SMALL-LOSS	FOCAL	3	"BCL10,C1orf52,SYDE2"
TCGA.CK.5914.01A	1	85655733	85736260	8	-0.9879	SMALL-LOSS	FOCAL	3	"BCL10,C1orf52,SYDE2"
TCGA.EI.6883	1	86385775	87462754	303	-0.6761	SMALL-LOSS	FOCAL	8	"CLCA1,CLCA2,CLCA4,COL24A1,HS2ST1,ODF2L,SEP15,SH3GLB1"
TCGA.AA.A00N.01A	1	86965349	87040195	10	-1.0072	SMALL-LOSS	FOCAL	2	"CLCA1,CLCA4"
TCGA.AA.A010.01A	1	87036708	87045648	7	-1.158	SMALL-LOSS	FOCAL	1	CLCA4
TCGA.AA.3850	1	88294827	89019014	251	-0.72335	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	1	88343417	88845493	179	-0.7877	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	1	88350911	88823869	161	-0.5957	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	1	89423479	89435334	10	-0.698	SMALL-LOSS	FOCAL	1	CCBL2
TCGA.AA.A00N.01A	1	89434366	89476585	9	-0.767	SMALL-LOSS	FOCAL	3	"CCBL2,GBP3,RBMXL1"
TCGA.AA.A00Q.01A	1	89480182	89734999	53	-1.1182	SMALL-LOSS	FOCAL	6	"GBP1,GBP2,GBP3,GBP4,GBP5,GBP7"
TCGA.AA.A00A.01A	1	89480932	89730341	47	-0.8345	SMALL-LOSS	FOCAL	6	"GBP1,GBP2,GBP3,GBP4,GBP5,GBP7"
TCGA.AG.3909.01A	1	89582668	89598901	7	-1.1923	SMALL-LOSS	FOCAL	2	"GBP2,GBP7"
TCGA.AA.A00Q.01A	1	89834059	92200283	86	-0.7623	SMALL-LOSS	FOCAL	10	"BARHL2,CDC7,GBP6,HFM1,LRRC8B,LRRC8C,LRRC8D,TGFBR3,ZNF326,ZNF644"
TCGA.AZ.4615	1	90153284	92234552	686	-0.6381	SMALL-LOSS	FOCAL	8	"BARHL2,CDC7,HFM1,LRRC8C,LRRC8D,TGFBR3,ZNF326,ZNF644"
TCGA.AZ.4682	1	90452118	90566168	31	-0.7436	SMALL-LOSS	FOCAL	1	ZNF326
TCGA.AG.3909.01A	1	90463615	90484193	7	-0.8773	SMALL-LOSS	FOCAL	1	ZNF326
TCGA.AA.3850	1	90830453	91044660	73	-0.94895	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	1	91402074	91418025	5	-0.9469	SMALL-LOSS	FOCAL	1	ZNF644
TCGA.AG.A01W.01A	1	91745954	91752928	6	-0.6854	SMALL-LOSS	FOCAL	1	HFM1
TCGA.AA.A00L.01A	1	91851115	91967224	5	-1.0545	SMALL-LOSS	FOCAL	2	"CDC7,HFM1"
TCGA.AG.3909.01A	1	91859612	91989589	13	-1.2807	SMALL-LOSS	FOCAL	2	"CDC7,HFM1"
TCGA.AA.3811	1	91905738	91937694	22	-1.0553	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	1	91919224	91919609	7	-0.887	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	1	91919224	91923712	12	-1.3161	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	1	91960074	92215162	13	-0.7189	SMALL-LOSS	FOCAL	2	"CDC7,TGFBR3"
TCGA.AG.A01L.01A	1	91967224	91985670	9	-0.5479	SMALL-LOSS	FOCAL	1	CDC7
TCGA.AA.A00N.01A	1	92467579	92518015	10	-0.8986	SMALL-LOSS	FOCAL	2	"BRDT,EPHX4"
TCGA.AG.3909.01A	1	92467579	92518015	9	-0.6671	SMALL-LOSS	FOCAL	2	"BRDT,EPHX4"
TCGA.AG.A01W.01A	1	92535509	92539575	5	-1.2098	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	92751995	92772688	12	-0.9624	SMALL-LOSS	FOCAL	2	"GLMN,RPAP2"
TCGA.AG.3909.01A	1	92751995	92772688	11	-1.0551	SMALL-LOSS	FOCAL	2	"GLMN,RPAP2"
TCGA.CK.5914.01A	1	92751995	92772688	12	-0.9894	SMALL-LOSS	FOCAL	2	"GLMN,RPAP2"
TCGA.EI.6883	1	92863972	93688960	138	-0.6563	SMALL-LOSS	FOCAL	7	"CCDC18,EVI5,FAM69A,GFI1,MTF2,RPL5,TMED5"
TCGA.AA.A00N.01A	1	93620267	93659121	11	-1.2348	SMALL-LOSS	FOCAL	2	"CCDC18,TMED5"
TCGA.CK.5914.01A	1	93620267	93672636	14	-0.6632	SMALL-LOSS	FOCAL	2	"CCDC18,TMED5"
TCGA.AA.A00N.01A	1	93812165	93826018	3	-1.2889	SMALL-LOSS	FOCAL	1	DR1
TCGA.AA.3509.01A	1	94014798	94312331	16	-0.7104	SMALL-LOSS	FOCAL	2	"BCAR3,FNBP1L"
TCGA.AA.3941	1	94334723	94337047	3	-0.6684	SMALL-LOSS	FOCAL	1	DNTTIP2
TCGA.CK.5914.01A	1	94335224	94370015	14	-0.7501	SMALL-LOSS	FOCAL	2	"DNTTIP2,GCLM"
TCGA.AA.3509.01A	1	94338626	94650860	67	-0.7509	SMALL-LOSS	FOCAL	4	"ABCA4,ARHGAP29,DNTTIP2,GCLM"
TCGA.AA.A00N.01A	1	94354519	94370015	6	-1.3056	SMALL-LOSS	FOCAL	1	GCLM
TCGA.AA.A00D.01A	1	94502671	94645231	30	-0.9085	SMALL-LOSS	FOCAL	2	"ABCA4,ARHGAP29"
TCGA.AG.4009.01A	1	94674758	94696926	3	-0.8482	SMALL-LOSS	FOCAL	1	ARHGAP29
TCGA.AA.A00N.01A	1	94980644	95303220	13	-0.9438	SMALL-LOSS	FOCAL	3	"ABCD3,F3,SLC44A3"
TCGA.AG.3909.01A	1	94995999	95294008	8	-0.8366	SMALL-LOSS	FOCAL	2	"F3,SLC44A3"
TCGA.AG.4009.01A	1	94995999	95294008	8	-0.6678	SMALL-LOSS	FOCAL	2	"F3,SLC44A3"
TCGA.DM.A1D9	1	95440870	95470810	11	-0.6951	SMALL-LOSS	FOCAL	1	ALG14
TCGA.AA.A00N.01A	1	95709790	97243102	8	-1.2325	SMALL-LOSS	FOCAL	3	"PTBP2,RWDD3,TMEM56-RWDD3"
TCGA.AG.3909.01A	1	95709790	97243102	7	-1.0818	SMALL-LOSS	FOCAL	3	"PTBP2,RWDD3,TMEM56-RWDD3"
TCGA.AA.3850	1	95735493	99878453	1138	-0.65825	SMALL-LOSS	FOCAL	5	"DPYD,LPPR4,LPPR5,PTBP2,SNX7"
TCGA.AA.3844	1	95750355	95781421	16	-0.6551	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	1	95969473	100019453	1088	-0.5374	SMALL-LOSS	FOCAL	5	"DPYD,LPPR4,LPPR5,PTBP2,SNX7"
TCGA.AG.3881	1	96131846	100019453	1046	-0.8604	SMALL-LOSS	FOCAL	5	"DPYD,LPPR4,LPPR5,PTBP2,SNX7"
TCGA.AG.3727	1	96590824	97604036	260	-0.8336	SMALL-LOSS	FOCAL	2	"DPYD,PTBP2"
TCGA.CM.6677	1	97177086	99205511	440	-0.5843	SMALL-LOSS	FOCAL	3	"DPYD,PTBP2,SNX7"
TCGA.AG.4009.01A	1	97189034	97243102	5	-0.8957	SMALL-LOSS	FOCAL	1	PTBP2
TCGA.EI.6883	1	97397046	98352052	220	-0.6914	SMALL-LOSS	FOCAL	1	DPYD
TCGA.AA.A00A.01A	1	97544494	100587887	126	-1.0851	SMALL-LOSS	FOCAL	10	"AGL,DPYD,FRRS1,HIAT1,LPPR4,LPPR5,PALMD,SASS6,SLC35A3,SNX7"
TCGA.CK.5914.01A	1	100316538	100329945	5	-1.253	SMALL-LOSS	FOCAL	1	AGL
TCGA.AG.3909.01A	1	100335918	100357941	16	-0.7757	SMALL-LOSS	FOCAL	1	AGL
TCGA.AG.3909.01A	1	100483223	100525407	5	-0.6495	SMALL-LOSS	FOCAL	2	"HIAT1,SLC35A3"
TCGA.CK.5914.01A	1	100515436	100535104	7	-0.5288	SMALL-LOSS	FOCAL	1	HIAT1
TCGA.AA.A00A.01A	1	100588704	100605956	8	-0.6642	SMALL-LOSS	FOCAL	2	"SASS6,TRMT13"
TCGA.AA.A01Q.01A	1	100671725	100684135	6	-0.5359	SMALL-LOSS	FOCAL	1	DBT
TCGA.AG.3909.01A	1	100671725	100684135	7	-0.7128	SMALL-LOSS	FOCAL	1	DBT
TCGA.AG.4009.01A	1	100671725	100696252	8	-0.7008	SMALL-LOSS	FOCAL	1	DBT
TCGA.AG.A01W.01A	1	101144960	101159834	6	-0.5552	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	101339491	101387215	13	-1.0042	SMALL-LOSS	FOCAL	2	"EXTL2,SLC30A7"
TCGA.AG.3909.01A	1	101354210	101377631	6	-0.9989	SMALL-LOSS	FOCAL	2	"EXTL2,SLC30A7"
TCGA.AA.3930.01A	1	102290535	104068691	67	-0.9542	SMALL-LOSS	FOCAL	4	"COL11A1,LOC101928436,OLFM3,RNPC3"
TCGA.EI.6883	1	102920525	103005083	19	-0.6129	SMALL-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	1	103116136	107401364	84	-0.8094	SMALL-LOSS	FOCAL	8	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,RNPC3"
TCGA.AA.3519	1	103251005	105091695	334	-0.8492	SMALL-LOSS	FOCAL	8	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,RNPC3"
TCGA.AA.A010.01A	1	103343548	103364482	11	-0.9396	SMALL-LOSS	FOCAL	1	COL11A1
TCGA.AA.A02K.01A	1	103347190	103377644	10	-0.5639	SMALL-LOSS	FOCAL	1	COL11A1
TCGA.AG.A014.01A	1	103348703	104121884	69	-0.7465	SMALL-LOSS	FOCAL	4	"AMY2B,COL11A1,LOC101928436,RNPC3"
TCGA.AA.A010.01A	1	103444867	103463792	7	-0.9568	SMALL-LOSS	FOCAL	1	COL11A1
TCGA.AA.3861.01A	1	103487198	104070255	12	-0.602	SMALL-LOSS	FOCAL	3	"COL11A1,LOC101928436,RNPC3"
TCGA.AZ.4682	1	103689876	104643280	100	-0.7777	SMALL-LOSS	FOCAL	7	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,LOC101928436,RNPC3"
TCGA.A6.3808.01A	1	104068691	104297370	20	-0.6409	SMALL-LOSS	FOCAL	6	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,RNPC3"
TCGA.AA.A010.01A	1	104202930	107950221	11	-1.1119	SMALL-LOSS	FOCAL	5	"AMY1A,AMY1B,AMY1C,NTNG1,PRMT6"
TCGA.AA.3955	1	105324069	106562719	293	-0.6863	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	107599317	107691174	3	-1.1403	SMALL-LOSS	FOCAL	2	"NTNG1,PRMT6"
TCGA.AG.3909.01A	1	108679224	108735086	10	-1.1024	SMALL-LOSS	FOCAL	1	SLC25A24
TCGA.AA.A00N.01A	1	108686136	108766251	10	-1.1684	SMALL-LOSS	FOCAL	2	"NBPF4,SLC25A24"
TCGA.AA.A010.01A	1	108766251	109200025	23	-0.8657	SMALL-LOSS	FOCAL	4	"FAM102B,HENMT1,NBPF4,NBPF6"
TCGA.AA.3930.01A	1	108771493	109007758	4	-0.7325	SMALL-LOSS	FOCAL	2	"NBPF4,NBPF6"
TCGA.AA.3509.01A	1	109010021	109289287	38	-0.6868	SMALL-LOSS	FOCAL	6	"FAM102B,FNDC7,HENMT1,NBPF6,PRPF38B,STXBP3"
TCGA.CK.5914.01A	1	109177665	109202409	9	-1.2903	SMALL-LOSS	FOCAL	2	"FAM102B,HENMT1"
TCGA.CK.5914.01A	1	109235192	109284321	18	-0.7072	SMALL-LOSS	FOCAL	2	"FNDC7,PRPF38B"
TCGA.AG.3909.01A	1	109235192	109302556	18	-0.5528	SMALL-LOSS	FOCAL	3	"FNDC7,PRPF38B,STXBP3"
TCGA.AA.3930.01A	1	109315240	109351356	12	-0.6301	SMALL-LOSS	FOCAL	1	STXBP3
TCGA.AG.3909.01A	1	109428111	109441225	5	-0.769	SMALL-LOSS	FOCAL	1	GPSM2
TCGA.AG.A02X.01A	1	109607113	109656181	12	-0.545	SMALL-LOSS	FOCAL	3	"C1orf194,TAF13,TMEM167B"
TCGA.CK.5914.01A	1	109607113	109656181	13	-1.112	SMALL-LOSS	FOCAL	3	"C1orf194,TAF13,TMEM167B"
TCGA.AG.A023.01A	1	109608719	109731676	20	-1.1473	SMALL-LOSS	FOCAL	4	"C1orf194,KIAA1324,TAF13,TMEM167B"
TCGA.AA.A00N.01A	1	109656779	109836769	66	-0.6454	SMALL-LOSS	FOCAL	5	"CELSR2,KIAA1324,MYBPHL,PSRC1,SARS"
TCGA.CK.5914.01A	1	109714451	109727611	4	-0.9775	SMALL-LOSS	FOCAL	1	KIAA1324
TCGA.AA.A01Q.01A	1	109714451	109745524	17	-1.1222	SMALL-LOSS	FOCAL	1	KIAA1324
TCGA.AA.A01Q.01A	1	109756568	109792670	12	-0.5954	SMALL-LOSS	FOCAL	2	"CELSR2,SARS"
TCGA.AA.3930.01A	1	109780372	109815209	26	-0.5468	SMALL-LOSS	FOCAL	2	"CELSR2,SARS"
TCGA.CK.5914.01A	1	109792670	109836769	33	-0.5585	SMALL-LOSS	FOCAL	3	"CELSR2,MYBPHL,PSRC1"
TCGA.AG.4009.01A	1	109793065	109795222	3	-1.2683	SMALL-LOSS	FOCAL	1	CELSR2
TCGA.AA.A01Q.01A	1	109793065	109837701	33	-1.1807	SMALL-LOSS	FOCAL	3	"CELSR2,MYBPHL,PSRC1"
TCGA.AA.A010.01A	1	109810503	109813809	6	-1.0278	SMALL-LOSS	FOCAL	1	CELSR2
TCGA.AA.A00N.01A	1	109909968	110050476	32	-0.9002	SMALL-LOSS	FOCAL	6	"AMIGO1,ATXN7L2,CYB561D1,PSMA5,SORT1,SYPL2"
TCGA.CK.5914.01A	1	109909968	110050476	32	-0.719	SMALL-LOSS	FOCAL	6	"AMIGO1,ATXN7L2,CYB561D1,PSMA5,SORT1,SYPL2"
TCGA.AG.3909.01A	1	109944575	110085615	27	-0.974	SMALL-LOSS	FOCAL	6	"AMIGO1,ATXN7L2,CYB561D1,GPR61,PSMA5,SYPL2"
TCGA.AF.3914.01A	1	110018163	110050476	18	-0.6779	SMALL-LOSS	FOCAL	4	"AMIGO1,ATXN7L2,CYB561D1,SYPL2"
TCGA.AG.4009.01A	1	110018163	110050476	18	-0.9124	SMALL-LOSS	FOCAL	4	"AMIGO1,ATXN7L2,CYB561D1,SYPL2"
TCGA.AA.A01Q.01A	1	110028625	110050476	15	-0.583	SMALL-LOSS	FOCAL	3	"AMIGO1,ATXN7L2,CYB561D1"
TCGA.AA.A00Q.01A	1	110029107	110213870	57	-0.8358	SMALL-LOSS	FOCAL	9	"AMIGO1,AMPD2,ATXN7L2,CYB561D1,GNAI3,GNAT2,GPR61,GSTM2,GSTM4"
TCGA.AG.A01W.01A	1	110056405	110061426	6	-1.0258	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	1	110105584	110329169	9	-0.6632	SMALL-LOSS	FOCAL	9	"AMPD2,EPS8L3,GNAI3,GNAT2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5"
TCGA.AA.A00N.01A	1	110145929	110155347	8	-1.2762	SMALL-LOSS	FOCAL	1	GNAT2
TCGA.AA.3930.01A	1	110167888	110171712	9	-0.7842	SMALL-LOSS	FOCAL	1	AMPD2
TCGA.AG.3909.01A	1	110167888	110281986	44	-1.0471	SMALL-LOSS	FOCAL	6	"AMPD2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5"
TCGA.AA.3939.01A	1	110170395	110173258	7	-0.5811	SMALL-LOSS	FOCAL	1	AMPD2
TCGA.AA.A01C.01A	1	110201397	110224349	11	-0.6922	SMALL-LOSS	FOCAL	2	"GSTM2,GSTM4"
TCGA.AG.A01L.01A	1	110230728	110259902	12	-0.7667	SMALL-LOSS	FOCAL	2	"GSTM1,GSTM5"
TCGA.AA.A00N.01A	1	110456839	110607182	43	-0.5327	SMALL-LOSS	FOCAL	4	"AHCYL1,ALX3,CSF1,STRIP1"
TCGA.AG.4009.01A	1	110456839	110607182	41	-0.6135	SMALL-LOSS	FOCAL	4	"AHCYL1,ALX3,CSF1,STRIP1"
TCGA.AA.A010.01A	1	110456839	110775467	62	-0.7785	SMALL-LOSS	FOCAL	7	"AHCYL1,ALX3,CSF1,KCNC4,SLC6A17,STRIP1,UBL4B"
TCGA.AG.3909.01A	1	110881986	110888115	3	-1.095	SMALL-LOSS	FOCAL	1	RBM15
TCGA.AA.A00N.01A	1	110883139	110948869	13	-1.1348	SMALL-LOSS	FOCAL	3	"LAMTOR5,RBM15,SLC16A4"
TCGA.AG.3909.01A	1	110931801	110948869	4	-1.1552	SMALL-LOSS	FOCAL	2	"LAMTOR5,SLC16A4"
TCGA.AA.A00N.01A	1	111136456	111215697	5	-1.3158	SMALL-LOSS	FOCAL	2	"KCNA2,KCNA3"
TCGA.AG.3909.01A	1	111145894	111215697	3	-1.1864	SMALL-LOSS	FOCAL	2	"KCNA2,KCNA3"
TCGA.AG.4009.01A	1	111145894	111215697	3	-1.2524	SMALL-LOSS	FOCAL	2	"KCNA2,KCNA3"
TCGA.AG.A01W.01A	1	111571794	111575325	4	-1.039	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	111660765	111741222	25	-0.6289	SMALL-LOSS	FOCAL	3	"CEPT1,DENND2D,DRAM2"
TCGA.AG.3909.01A	1	111663101	111739760	20	-0.6414	SMALL-LOSS	FOCAL	3	"CEPT1,DENND2D,DRAM2"
TCGA.AA.A00Q.01A	1	111701953	111781364	27	-1.1664	SMALL-LOSS	FOCAL	3	"CEPT1,CHI3L2,DENND2D"
TCGA.AG.4009.01A	1	111740480	111781364	12	-0.5301	SMALL-LOSS	FOCAL	2	"CHI3L2,DENND2D"
TCGA.AG.3909.01A	1	111740480	111784820	14	-1.287	SMALL-LOSS	FOCAL	2	"CHI3L2,DENND2D"
TCGA.AA.A01C.01A	1	111770270	111772392	2	-0.9337	SMALL-LOSS	FOCAL	1	CHI3L2
TCGA.EI.6883	1	111788778	112027938	142	-0.6479	SMALL-LOSS	FOCAL	7	"ATP5F1,C1orf162,CHIA,OVGP1,PIFO,TMIGD3,WDR77"
TCGA.AA.3930.01A	1	111861694	111965502	13	-0.7236	SMALL-LOSS	FOCAL	3	"CHIA,OVGP1,PIFO"
TCGA.AG.4009.01A	1	111889187	111893816	6	-0.5208	SMALL-LOSS	FOCAL	1	PIFO
TCGA.AA.A00N.01A	1	111890275	111893816	4	-1.0983	SMALL-LOSS	FOCAL	1	PIFO
TCGA.AA.A010.01A	1	112237946	112251728	5	-0.5388	SMALL-LOSS	FOCAL	1	RAP1A
TCGA.DY.A1DC	1	112289117	112312333	10	-0.6623	SMALL-LOSS	FOCAL	2	"DDX20,FAM212B"
TCGA.AG.3909.01A	1	112298229	112308342	8	-1.2398	SMALL-LOSS	FOCAL	2	"DDX20,FAM212B"
TCGA.AA.A010.01A	1	112304818	112525009	11	-0.7713	SMALL-LOSS	FOCAL	2	"DDX20,KCND3"
TCGA.CM.4747	1	112749639	112785770	23	-0.6397	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1DB	1	113040276	113773980	147	-0.6878	SMALL-LOSS	FOCAL	9	"CAPZA1,FAM19A3,LRIG2,MOV10,PPM1J,RHOC,SLC16A1,ST7L,WNT2B"
TCGA.AG.4009.01A	1	113189792	113242812	25	-0.9055	SMALL-LOSS	FOCAL	2	"CAPZA1,MOV10"
TCGA.AG.3909.01A	1	113189792	113471677	44	-0.7019	SMALL-LOSS	FOCAL	6	"CAPZA1,FAM19A3,MOV10,PPM1J,RHOC,SLC16A1"
TCGA.AA.A010.01A	1	113212138	113232485	6	-0.7877	SMALL-LOSS	FOCAL	2	"CAPZA1,MOV10"
TCGA.AA.A00N.01A	1	113217483	113464565	34	-0.6399	SMALL-LOSS	FOCAL	5	"FAM19A3,MOV10,PPM1J,RHOC,SLC16A1"
TCGA.AA.A01Q.01A	1	113234240	113269177	27	-1.0814	SMALL-LOSS	FOCAL	4	"FAM19A3,MOV10,PPM1J,RHOC"
TCGA.AF.3914.01A	1	113237990	113264808	19	-1.0285	SMALL-LOSS	FOCAL	4	"FAM19A3,MOV10,PPM1J,RHOC"
TCGA.AA.A01C.01A	1	113238751	113245579	10	-0.675	SMALL-LOSS	FOCAL	2	"MOV10,RHOC"
TCGA.AG.4009.01A	1	113244033	113256112	10	-1.2519	SMALL-LOSS	FOCAL	2	"PPM1J,RHOC"
TCGA.AA.A010.01A	1	113257566	113638487	15	-0.7366	SMALL-LOSS	FOCAL	4	"FAM19A3,LRIG2,PPM1J,SLC16A1"
TCGA.AG.A01W.01A	1	114015829	114027571	7	-0.7849	SMALL-LOSS	FOCAL	1	MAGI3
TCGA.AG.A01W.01A	1	114169206	114181734	7	-0.8616	SMALL-LOSS	FOCAL	1	MAGI3
TCGA.AG.3909.01A	1	114280715	114377482	19	-0.7576	SMALL-LOSS	FOCAL	3	"PHTF1,PTPN22,RSBN1"
TCGA.CK.5914.01A	1	114300263	114310817	5	-0.9139	SMALL-LOSS	FOCAL	2	"PHTF1,RSBN1"
TCGA.AA.A00N.01A	1	114319795	114380165	13	-0.5788	SMALL-LOSS	FOCAL	2	"PTPN22,RSBN1"
TCGA.CK.5914.01A	1	114357491	114391104	12	-0.6932	SMALL-LOSS	FOCAL	1	PTPN22
TCGA.CK.5914.01A	1	114437640	114483004	15	-0.8377	SMALL-LOSS	FOCAL	3	"AP4B1,DCLRE1B,HIPK1"
TCGA.AA.A010.01A	1	114453715	114499698	7	-0.5461	SMALL-LOSS	FOCAL	2	"DCLRE1B,HIPK1"
TCGA.AA.A00D.01A	1	114500649	115119248	42	-0.8476	SMALL-LOSS	FOCAL	5	"BCAS2,HIPK1,OLFML3,SYT6,TRIM33"
TCGA.D5.6536	1	114708750	115210160	122	-0.7662	SMALL-LOSS	FOCAL	3	"BCAS2,DENND2C,TRIM33"
TCGA.AG.A01W.01A	1	115019992	115030838	8	-0.8659	SMALL-LOSS	FOCAL	1	TRIM33
TCGA.CK.4952.01A	1	115124540	115321634	26	-0.946	SMALL-LOSS	FOCAL	5	"AMPD1,CSDE1,DENND2C,NRAS,SIKE1"
TCGA.AA.A00N.01A	1	115215696	115226803	11	-0.9607	SMALL-LOSS	FOCAL	1	AMPD1
TCGA.AG.A01L.01A	1	115215696	115229314	12	-0.6195	SMALL-LOSS	FOCAL	1	AMPD1
TCGA.CK.5914.01A	1	115215696	115269557	27	-0.6229	SMALL-LOSS	FOCAL	3	"AMPD1,CSDE1,NRAS"
TCGA.AG.3909.01A	1	115215696	115403296	46	-0.7814	SMALL-LOSS	FOCAL	5	"AMPD1,CSDE1,NRAS,SIKE1,SYCP1"
TCGA.AA.A00N.01A	1	115251124	115272852	13	-0.6154	SMALL-LOSS	FOCAL	2	"CSDE1,NRAS"
TCGA.CK.5914.01A	1	115316844	115452966	20	-0.7282	SMALL-LOSS	FOCAL	2	"SIKE1,SYCP1"
TCGA.CK.5914.01A	1	115486943	115489808	4	-0.6235	SMALL-LOSS	FOCAL	1	SYCP1
TCGA.AA.A00Q.01A	1	115488855	116287400	34	-0.6778	SMALL-LOSS	FOCAL	6	"CASQ2,NGF,SYCP1,TSHB,TSPAN2,VANGL1"
TCGA.AA.A00D.01A	1	115489808	116310882	34	-0.5521	SMALL-LOSS	FOCAL	6	"CASQ2,NGF,SYCP1,TSHB,TSPAN2,VANGL1"
TCGA.AG.3909.01A	1	116670726	117119902	29	-0.6547	SMALL-LOSS	FOCAL	4	"ATP1A1,CD58,IGSF3,MAB21L3"
TCGA.AA.A00N.01A	1	116916788	117119902	30	-0.8209	SMALL-LOSS	FOCAL	3	"ATP1A1,CD58,IGSF3"
TCGA.AG.4009.01A	1	116926594	116946460	19	-0.5189	SMALL-LOSS	FOCAL	1	ATP1A1
TCGA.AA.A010.01A	1	116935429	116940488	5	-0.9523	SMALL-LOSS	FOCAL	1	ATP1A1
TCGA.AA.A010.01A	1	116941241	116948188	8	-0.5637	SMALL-LOSS	FOCAL	1	ATP1A1
TCGA.AG.A00Y.01A	1	117564216	118727639	138	-0.6725	SMALL-LOSS	FOCAL	9	"CD101,FAM46C,GDAP2,MAN1A2,SPAG17,TRIM45,TTF2,VTCN1,WDR3"
TCGA.AG.3909.01A	1	117602885	117632629	13	-0.6489	SMALL-LOSS	FOCAL	1	TTF2
TCGA.CK.5914.01A	1	117602885	117663319	29	-0.5705	SMALL-LOSS	FOCAL	2	"TRIM45,TTF2"
TCGA.AA.A01Q.01A	1	117604986	117660618	27	-0.9203	SMALL-LOSS	FOCAL	2	"TRIM45,TTF2"
TCGA.AG.3909.01A	1	117637859	117643990	5	-0.6403	SMALL-LOSS	FOCAL	1	TTF2
TCGA.AG.3909.01A	1	117654876	117663319	6	-1.2564	SMALL-LOSS	FOCAL	1	TRIM45
TCGA.AG.4009.01A	1	117910805	118003063	7	-0.6347	SMALL-LOSS	FOCAL	1	MAN1A2
TCGA.AG.3909.01A	1	118455145	118488664	14	-0.726	SMALL-LOSS	FOCAL	2	"GDAP2,WDR3"
TCGA.CK.5914.01A	1	118461172	118482057	7	-0.656	SMALL-LOSS	FOCAL	2	"GDAP2,WDR3"
TCGA.AA.A00A.01A	1	118515998	118629255	31	-0.7706	SMALL-LOSS	FOCAL	1	SPAG17
TCGA.A6.2686	1	119252218	120315183	368	-0.9402	SMALL-LOSS	FOCAL	8	"HAO2,HMGCS2,HSD3B1,HSD3B2,PHGDH,TBX15,WARS2,ZNF697"
TCGA.AA.A00N.01A	1	119530186	119588144	5	-0.6979	SMALL-LOSS	FOCAL	2	"TBX15,WARS2"
TCGA.AA.A010.01A	1	119923231	120056428	14	-0.5577	SMALL-LOSS	FOCAL	3	"HAO2,HSD3B1,HSD3B2"
TCGA.AG.A01W.01A	1	119980398	120070935	11	-0.7292	SMALL-LOSS	FOCAL	1	HSD3B1
TCGA.AG.4009.01A	1	120165291	120254656	4	-0.5973	SMALL-LOSS	FOCAL	2	"PHGDH,ZNF697"
TCGA.AA.A00N.01A	1	120165291	120265930	6	-0.8849	SMALL-LOSS	FOCAL	2	"PHGDH,ZNF697"
TCGA.AA.A02K.01A	1	120277216	120286488	7	-0.6272	SMALL-LOSS	FOCAL	1	PHGDH
TCGA.AG.A01W.01A	1	120373996	120737337	10	-0.7562	SMALL-LOSS	FOCAL	3	"ADAM30,NBPF7,NOTCH2"
TCGA.AA.A00Q.01A	1	120436600	120529552	34	-0.9143	SMALL-LOSS	FOCAL	2	"ADAM30,NOTCH2"
TCGA.AA.A02E.01A	1	120572472	120930008	7	-1.1263	SMALL-LOSS	FOCAL	3	"FAM72B,FCGR1B,NOTCH2"
TCGA.AA.A02K.01A	1	120572473	120841928	3	-0.957	SMALL-LOSS	FOCAL	2	"FAM72B,NOTCH2"
TCGA.AG.3909.01A	1	120839786	143912113	13	-0.8069	SMALL-LOSS	FOCAL	5	"FAM72B,FAM72C,FAM72D,FCGR1B,PPIAL4G"
TCGA.AA.3941	1	121172839	145013753	36	-0.6414	SMALL-LOSS	FOCAL	9	"FAM72C,FAM72D,NBPF20,NBPF8,NBPF9,PDE4DIP,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AG.3882	1	144033938	145395439	26	-0.6435	SMALL-LOSS	FOCAL	9	"NBPF10,NBPF20,NBPF8,NBPF9,NOTCH2NL,PDE4DIP,PPIAL4A,PPIAL4C,SEC22B"
TCGA.AA.A00D.01A	1	144814632	144923648	39	-0.7804	SMALL-LOSS	FOCAL	4	"NBPF20,NBPF8,NBPF9,PDE4DIP"
TCGA.AA.A00L.01A	1	144816613	144946575	42	-0.6869	SMALL-LOSS	FOCAL	4	"NBPF20,NBPF8,NBPF9,PDE4DIP"
TCGA.AG.3883	1	144849543	144997256	17	-0.5871	SMALL-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.A00Q.01A	1	144854126	144946575	40	-0.796	SMALL-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.A00A.01A	1	144878985	144994564	27	-0.7399	SMALL-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AA.3819	1	144893049	144997256	10	-0.6385	SMALL-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AF.4110	1	144916994	144938878	4	-1.2875	SMALL-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.DM.A1D9	1	144916994	145382123	11	-0.584	SMALL-LOSS	FOCAL	6	"NBPF10,NBPF20,NBPF9,NOTCH2NL,PDE4DIP,SEC22B"
TCGA.A6.6137	1	144957687	145009381	5	-1.051	SMALL-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.D5.6931	1	144997256	145013753	4	-1.2676	SMALL-LOSS	FOCAL	3	"NBPF20,NBPF9,PDE4DIP"
TCGA.AG.3909.01A	1	145414749	145498051	21	-0.5467	SMALL-LOSS	FOCAL	7	"ANKRD34A,HFE2,LIX1L,NBPF10,NBPF20,POLR3GL,TXNIP"
TCGA.AG.4009.01A	1	145473301	145474727	3	-1.0292	SMALL-LOSS	FOCAL	3	"ANKRD34A,NBPF10,NBPF20"
TCGA.AA.A01F.01A	1	145516328	145518019	3	-0.9669	SMALL-LOSS	FOCAL	3	"NBPF10,NBPF20,PEX11B"
TCGA.AA.A00N.01A	1	145537956	145696495	57	-0.8956	SMALL-LOSS	FOCAL	9	"ANKRD35,CD160,ITGA10,NBPF10,NBPF20,NUDT17,PIAS3,POLR3C,RNF115"
TCGA.CK.5914.01A	1	145560811	145609163	32	-1.0528	SMALL-LOSS	FOCAL	6	"ANKRD35,NBPF10,NBPF20,NUDT17,PIAS3,POLR3C"
TCGA.AG.4009.01A	1	145566961	145588827	17	-0.6345	SMALL-LOSS	FOCAL	5	"ANKRD35,NBPF10,NBPF20,NUDT17,PIAS3"
TCGA.AA.A010.01A	1	145646093	145698739	10	-0.7753	SMALL-LOSS	FOCAL	4	"CD160,NBPF10,NBPF20,RNF115"
TCGA.AG.A01W.01A	1	145875326	146489533	9	-0.5152	SMALL-LOSS	FOCAL	4	"NBPF10,NBPF11,NBPF12,NBPF20"
TCGA.AA.A00A.01A	1	146461162	147380076	57	-1.074	SMALL-LOSS	FOCAL	10	"ACP6,BCL9,CHD1L,FMO5,GJA5,GJA8,NBPF10,NBPF12,NBPF20,PRKAB2"
TCGA.AA.3941	1	146504082	146506625	6	-1.2811	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	146631091	146731435	20	-0.5564	SMALL-LOSS	FOCAL	3	"CHD1L,FMO5,PRKAB2"
TCGA.AA.A00N.01A	1	146631091	146739070	25	-0.9919	SMALL-LOSS	FOCAL	3	"CHD1L,FMO5,PRKAB2"
TCGA.AA.A00L.01A	1	146631091	147095643	45	-0.5772	SMALL-LOSS	FOCAL	4	"BCL9,CHD1L,FMO5,PRKAB2"
TCGA.AG.4009.01A	1	146633978	146727417	15	-0.7341	SMALL-LOSS	FOCAL	3	"CHD1L,FMO5,PRKAB2"
TCGA.AA.A02K.01A	1	148009458	148022909	3	-0.7876	SMALL-LOSS	FOCAL	1	NBPF8
TCGA.AG.A01W.01A	1	148729653	148737961	8	-0.8686	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	1	148861856	148868443	6	-0.8337	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4614	1	149040065	149715561	7	-1.1594	SMALL-LOSS	FOCAL	2	"PPIAL4A,PPIAL4C"
TCGA.EI.7004	1	149040065	149715561	8	-1.0184	SMALL-LOSS	FOCAL	2	"PPIAL4A,PPIAL4C"
TCGA.AA.3549	1	149168797	149715561	4	-1.2267	SMALL-LOSS	FOCAL	2	"PPIAL4A,PPIAL4C"
TCGA.AA.A00Q.01A	1	149858075	149907985	34	-0.5632	SMALL-LOSS	FOCAL	7	"BOLA1,HIST2H2AB,HIST2H2AC,HIST2H2BE,MTMR11,SF3B4,SV2A"
TCGA.AA.A01F.01A	1	149859092	149895392	14	-0.6738	SMALL-LOSS	FOCAL	4	"BOLA1,HIST2H2AB,SF3B4,SV2A"
TCGA.AG.A01L.01A	1	149859092	149897676	15	-0.613	SMALL-LOSS	FOCAL	4	"BOLA1,HIST2H2AB,SF3B4,SV2A"
TCGA.CK.5914.01A	1	150039861	150300739	54	-0.5404	SMALL-LOSS	FOCAL	9	"ANP32E,APH1A,C1orf54,CA14,CIART,MRPS21,PLEKHO1,PRPF3,VPS45"
TCGA.AG.4009.01A	1	150116844	150130975	6	-0.6738	SMALL-LOSS	FOCAL	2	"PLEKHO1,VPS45"
TCGA.AA.A00N.01A	1	150116844	150208010	13	-1.1468	SMALL-LOSS	FOCAL	3	"ANP32E,PLEKHO1,VPS45"
TCGA.AA.A00L.01A	1	150116844	150230455	14	-0.6366	SMALL-LOSS	FOCAL	4	"ANP32E,CA14,PLEKHO1,VPS45"
TCGA.AG.A025.01A	1	150460293	150471660	11	-0.9545	SMALL-LOSS	FOCAL	1	TARS2
TCGA.A6.3808.01A	1	150484836	150683974	40	-0.5736	SMALL-LOSS	FOCAL	6	"ADAMTSL4,ECM1,ENSA,GOLPH3L,HORMAD1,MCL1"
TCGA.AG.4009.01A	1	150524957	150550708	15	-0.8103	SMALL-LOSS	FOCAL	2	"ADAMTSL4,MCL1"
TCGA.AF.3914.01A	1	150524957	150551277	18	-0.5149	SMALL-LOSS	FOCAL	2	"ADAMTSL4,MCL1"
TCGA.AA.A00D.01A	1	150598077	150679057	14	-0.7187	SMALL-LOSS	FOCAL	3	"ENSA,GOLPH3L,HORMAD1"
TCGA.AA.A00A.01A	1	150601458	150679057	11	-0.8705	SMALL-LOSS	FOCAL	3	"ENSA,GOLPH3L,HORMAD1"
TCGA.AA.A010.01A	1	150666615	150722469	18	-0.6847	SMALL-LOSS	FOCAL	3	"CTSS,GOLPH3L,HORMAD1"
TCGA.CK.5914.01A	1	150683974	150687046	4	-0.7414	SMALL-LOSS	FOCAL	1	HORMAD1
TCGA.AG.A025.01A	1	150705475	150737072	7	-0.9739	SMALL-LOSS	FOCAL	1	CTSS
TCGA.CK.5914.01A	1	150724209	150771604	6	-0.857	SMALL-LOSS	FOCAL	2	"CTSK,CTSS"
TCGA.AA.A00D.01A	1	150771604	150795632	14	-0.6207	SMALL-LOSS	FOCAL	2	"ARNT,CTSK"
TCGA.AA.A010.01A	1	150798980	150830776	12	-1.2392	SMALL-LOSS	FOCAL	1	ARNT
TCGA.AG.4009.01A	1	150808719	150830776	6	-0.9305	SMALL-LOSS	FOCAL	1	ARNT
TCGA.A6.6138	1	150809115	150812953	4	-0.7567	SMALL-LOSS	FOCAL	1	ARNT
TCGA.CK.5914.01A	1	150811865	150902416	9	-0.6956	SMALL-LOSS	FOCAL	2	"ARNT,SETDB1"
TCGA.AG.3909.01A	1	150818675	150830776	3	-1.1843	SMALL-LOSS	FOCAL	1	ARNT
TCGA.AA.A010.01A	1	150912347	150923794	12	-0.708	SMALL-LOSS	FOCAL	1	SETDB1
TCGA.AG.A025.01A	1	150923183	150971798	29	-0.6987	SMALL-LOSS	FOCAL	4	"ANXA9,CERS2,FAM63A,SETDB1"
TCGA.AA.A00N.01A	1	150931606	151015383	47	-0.733	SMALL-LOSS	FOCAL	6	"ANXA9,BNIPL,CERS2,FAM63A,PRUNE,SETDB1"
TCGA.AA.A010.01A	1	150967005	150974631	11	-0.849	SMALL-LOSS	FOCAL	2	"ANXA9,FAM63A"
TCGA.AA.A00Q.01A	1	151015791	151039664	10	-0.965	SMALL-LOSS	FOCAL	4	"BNIPL,C1orf56,CDC42SE1,MLLT11"
TCGA.A6.3808.01A	1	151039664	151079466	7	-1.1679	SMALL-LOSS	FOCAL	2	"GABPB2,MLLT11"
TCGA.AA.A00N.01A	1	151060624	151134223	26	-0.6008	SMALL-LOSS	FOCAL	5	"GABPB2,LYSMD1,SEMA6C,TNFAIP8L2,TNFAIP8L2-SCNM1"
TCGA.AF.3914.01A	1	151106818	151110155	7	-1.1906	SMALL-LOSS	FOCAL	1	SEMA6C
TCGA.AG.4009.01A	1	151106818	151112412	12	-0.7762	SMALL-LOSS	FOCAL	1	SEMA6C
TCGA.A6.3808.01A	1	151106818	151114938	13	-1.3124	SMALL-LOSS	FOCAL	1	SEMA6C
TCGA.AA.A010.01A	1	151131123	151141410	10	-0.5825	SMALL-LOSS	FOCAL	4	"LYSMD1,SCNM1,TNFAIP8L2,TNFAIP8L2-SCNM1"
TCGA.AA.A00D.01A	1	151143867	151227182	28	-0.5862	SMALL-LOSS	FOCAL	3	"PIP5K1A,TMOD4,VPS72"
TCGA.AG.3909.01A	1	151234590	151298551	27	-0.621	SMALL-LOSS	FOCAL	3	"PI4KB,PSMD4,ZNF687"
TCGA.AA.A010.01A	1	151395831	151414509	8	-1.2019	SMALL-LOSS	FOCAL	1	POGZ
TCGA.AA.A010.01A	1	151538575	151554054	8	-0.7904	SMALL-LOSS	FOCAL	1	TUFT1
TCGA.AA.A00N.01A	1	151611310	151666828	11	-0.65	SMALL-LOSS	FOCAL	1	SNX27
TCGA.AG.3909.01A	1	151611310	151739171	28	-0.7508	SMALL-LOSS	FOCAL	5	"CELF3,MRPL9,OAZ3,RIIAD1,SNX27"
TCGA.AA.A00L.01A	1	151687015	151735752	9	-0.8129	SMALL-LOSS	FOCAL	4	"CELF3,MRPL9,OAZ3,RIIAD1"
TCGA.CK.5914.01A	1	151694514	151785677	32	-0.922	SMALL-LOSS	FOCAL	6	"LINGO4,MRPL9,OAZ3,RIIAD1,RORC,TDRKH"
TCGA.AG.4009.01A	1	151732474	151755347	22	-0.7759	SMALL-LOSS	FOCAL	3	"MRPL9,OAZ3,TDRKH"
TCGA.AA.A010.01A	1	151732474	151867444	49	-0.5759	SMALL-LOSS	FOCAL	8	"C2CD4D,LINGO4,MRPL9,OAZ3,RORC,TDRKH,THEM4,THEM5"
TCGA.AF.3914.01A	1	151739171	151747821	9	-1.2037	SMALL-LOSS	FOCAL	2	"OAZ3,TDRKH"
TCGA.AA.A01Q.01A	1	151779899	151804123	11	-0.5888	SMALL-LOSS	FOCAL	1	RORC
TCGA.AA.A00N.01A	1	151861643	152130217	18	-1.0487	SMALL-LOSS	FOCAL	6	"RPTN,S100A10,S100A11,TCHH,TCHHL1,THEM4"
TCGA.AG.3909.01A	1	151867444	152195545	23	-0.7684	SMALL-LOSS	FOCAL	7	"HRNR,RPTN,S100A10,S100A11,TCHH,TCHHL1,THEM4"
TCGA.AG.A01W.01A	1	151924018	151928865	9	-0.9575	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	1	152127170	152187972	8	-0.6245	SMALL-LOSS	FOCAL	2	"HRNR,RPTN"
TCGA.AG.3906.01A	1	152185515	152285257	23	-0.6485	SMALL-LOSS	FOCAL	2	"FLG,HRNR"
TCGA.AG.3891.01A	1	152186575	152284826	21	-0.5749	SMALL-LOSS	FOCAL	2	"FLG,HRNR"
TCGA.AA.A00K.01A	1	152190805	152287748	21	-1.1704	SMALL-LOSS	FOCAL	2	"FLG,HRNR"
TCGA.AA.A00D.01A	1	152193405	152284826	17	-0.8402	SMALL-LOSS	FOCAL	2	"FLG,HRNR"
TCGA.AA.A00L.01A	1	152193405	152487869	30	-0.9723	SMALL-LOSS	FOCAL	6	"CRCT1,CRNN,FLG,FLG2,HRNR,LCE5A"
TCGA.AA.A00D.01A	1	152285257	152384542	11	-1.1627	SMALL-LOSS	FOCAL	3	"CRNN,FLG,FLG2"
TCGA.AA.A00N.01A	1	153507141	153516198	6	-1.0681	SMALL-LOSS	FOCAL	3	"S100A4,S100A5,S100A6"
TCGA.AA.A01Q.01A	1	153631556	153642237	13	-0.9656	SMALL-LOSS	FOCAL	2	"ILF2,SNAPIN"
TCGA.CK.5914.01A	1	153631556	153656157	22	-0.9825	SMALL-LOSS	FOCAL	3	"ILF2,NPR1,SNAPIN"
TCGA.AA.A00N.01A	1	153643299	153659439	13	-0.8938	SMALL-LOSS	FOCAL	2	"ILF2,NPR1"
TCGA.AG.3909.01A	1	153651564	153656157	7	-0.6639	SMALL-LOSS	FOCAL	1	NPR1
TCGA.AG.A016.01A	1	153655805	153662251	11	-0.7769	SMALL-LOSS	FOCAL	1	NPR1
TCGA.AG.A01L.01A	1	153657393	153661389	8	-0.7784	SMALL-LOSS	FOCAL	1	NPR1
TCGA.AA.A01Q.01A	1	153724708	153745704	21	-0.6505	SMALL-LOSS	FOCAL	1	INTS3
TCGA.AA.A00N.01A	1	153724708	153782606	30	-0.83	SMALL-LOSS	FOCAL	3	"GATAD2B,INTS3,SLC27A3"
TCGA.CK.5914.01A	1	153741317	153752275	16	-0.7088	SMALL-LOSS	FOCAL	2	"INTS3,SLC27A3"
TCGA.AG.3909.01A	1	153741317	153916487	46	-0.5688	SMALL-LOSS	FOCAL	4	"DENND4B,GATAD2B,INTS3,SLC27A3"
TCGA.AA.A010.01A	1	153902724	153927300	28	-0.7682	SMALL-LOSS	FOCAL	2	"CRTC2,DENND4B"
TCGA.AG.4009.01A	1	153902724	153927300	27	-0.6104	SMALL-LOSS	FOCAL	2	"CRTC2,DENND4B"
TCGA.CK.5914.01A	1	153908499	153940961	25	-0.7093	SMALL-LOSS	FOCAL	4	"CREB3L4,CRTC2,DENND4B,SLC39A1"
TCGA.AA.A00N.01A	1	153908499	153967513	43	-0.9286	SMALL-LOSS	FOCAL	8	"CREB3L4,CRTC2,DENND4B,JTB,NUP210L,RAB13,RPS27,SLC39A1"
TCGA.CK.5914.01A	1	153941368	153991391	23	-1.1385	SMALL-LOSS	FOCAL	5	"CREB3L4,JTB,NUP210L,RAB13,RPS27"
TCGA.CK.5914.01A	1	154072445	154115875	12	-0.8371	SMALL-LOSS	FOCAL	1	NUP210L
TCGA.CM.6165.01A	1	154091118	154125185	10	-0.5275	SMALL-LOSS	FOCAL	1	NUP210L
TCGA.AA.A00D.01A	1	154142822	154155416	5	-1.0889	SMALL-LOSS	FOCAL	1	TPM3
TCGA.AA.A00N.01A	1	154177998	154215635	17	-0.8954	SMALL-LOSS	FOCAL	3	"C1orf189,C1orf43,UBAP2L"
TCGA.AG.3909.01A	1	154178667	154215635	16	-0.5686	SMALL-LOSS	FOCAL	3	"C1orf189,C1orf43,UBAP2L"
TCGA.AA.A010.01A	1	154197548	154218652	10	-0.6199	SMALL-LOSS	FOCAL	1	UBAP2L
TCGA.AA.A00D.01A	1	154215635	154241242	16	-0.8992	SMALL-LOSS	FOCAL	1	UBAP2L
TCGA.AG.4009.01A	1	154245792	154317420	26	-0.6728	SMALL-LOSS	FOCAL	3	"AQP10,ATP8B2,HAX1"
TCGA.AA.A00N.01A	1	154247351	154312940	19	-1.2943	SMALL-LOSS	FOCAL	3	"AQP10,ATP8B2,HAX1"
TCGA.AA.A010.01A	1	154247351	154320844	30	-0.5325	SMALL-LOSS	FOCAL	3	"AQP10,ATP8B2,HAX1"
TCGA.AA.A01Q.01A	1	154296776	154318221	21	-0.7909	SMALL-LOSS	FOCAL	2	"AQP10,ATP8B2"
TCGA.AF.3914.01A	1	154300215	154309772	11	-1.2241	SMALL-LOSS	FOCAL	1	ATP8B2
TCGA.AG.3909.01A	1	154300215	154320844	23	-1.2049	SMALL-LOSS	FOCAL	1	ATP8B2
TCGA.AG.4009.01A	1	154458971	154698351	48	-0.5888	SMALL-LOSS	FOCAL	6	"ADAR,CHRNB2,KCNN3,SHE,TDRD10,UBE2Q1"
TCGA.AA.A00N.01A	1	154471550	154574128	44	-1.0814	SMALL-LOSS	FOCAL	5	"ADAR,CHRNB2,SHE,TDRD10,UBE2Q1"
TCGA.AG.3909.01A	1	154471550	154574128	42	-0.8796	SMALL-LOSS	FOCAL	5	"ADAR,CHRNB2,SHE,TDRD10,UBE2Q1"
TCGA.AA.A01Q.01A	1	154519844	154530655	13	-0.8077	SMALL-LOSS	FOCAL	2	"TDRD10,UBE2Q1"
TCGA.AF.3914.01A	1	154522830	154543617	15	-0.7752	SMALL-LOSS	FOCAL	2	"CHRNB2,UBE2Q1"
TCGA.AA.A010.01A	1	154557240	154574128	14	-0.5814	SMALL-LOSS	FOCAL	1	ADAR
TCGA.AG.3906.01A	1	154680410	154698351	4	-0.6581	SMALL-LOSS	FOCAL	1	KCNN3
TCGA.AF.3914.01A	1	154933376	154941811	9	-1.0878	SMALL-LOSS	FOCAL	2	"PYGO2,SHC1"
TCGA.AG.4009.01A	1	154933376	154947161	11	-0.892	SMALL-LOSS	FOCAL	3	"CKS1B,PYGO2,SHC1"
TCGA.AA.A01Q.01A	1	155013846	155041297	27	-1.0596	SMALL-LOSS	FOCAL	3	"ADAM15,DCST1,EFNA4"
TCGA.AF.3914.01A	1	155018318	155034325	17	-0.8639	SMALL-LOSS	FOCAL	2	"ADAM15,DCST1"
TCGA.AG.4009.01A	1	155018318	155039794	20	-0.9407	SMALL-LOSS	FOCAL	3	"ADAM15,DCST1,EFNA4"
TCGA.AA.3930.01A	1	155158549	155162508	5	-0.7551	SMALL-LOSS	FOCAL	1	MUC1
TCGA.AA.A010.01A	1	155175984	155194577	15	-1.073	SMALL-LOSS	FOCAL	2	"MTX1,THBS3"
TCGA.AG.A01W.01A	1	155182415	155184535	5	-0.8087	SMALL-LOSS	FOCAL	1	MTX1
TCGA.AA.A01Q.01A	1	155204764	155254924	38	-0.8403	SMALL-LOSS	FOCAL	5	"CLK2,FAM189B,GBA,HCN3,SCAMP3"
TCGA.AG.3909.01A	1	155210398	155297903	58	-1.2333	SMALL-LOSS	FOCAL	9	"CLK2,FAM189B,FDPS,GBA,HCN3,PKLR,RUSC1,RUSC1-AS1,SCAMP3"
TCGA.AA.A00N.01A	1	155580797	155730197	35	-0.6799	SMALL-LOSS	FOCAL	4	"DAP3,GON4L,MSTO1,YY1AP1"
TCGA.AA.A010.01A	1	155679547	155701693	9	-0.6042	SMALL-LOSS	FOCAL	1	DAP3
TCGA.AA.A010.01A	1	156011611	156024643	9	-0.7345	SMALL-LOSS	FOCAL	2	"LAMTOR2,UBQLN4"
TCGA.AG.4009.01A	1	156011611	156046394	17	-0.6525	SMALL-LOSS	FOCAL	4	"LAMTOR2,MEX3A,RAB25,UBQLN4"
TCGA.AF.3914.01A	1	156018281	156025057	6	-1.059	SMALL-LOSS	FOCAL	2	"LAMTOR2,UBQLN4"
TCGA.AA.A00L.01A	1	156124319	156211968	22	-0.584	SMALL-LOSS	FOCAL	5	"BGLAP,PMF1,PMF1-BGLAP,SEMA4A,SLC25A44"
TCGA.AF.3914.01A	1	156126177	156131117	7	-1.1492	SMALL-LOSS	FOCAL	1	SEMA4A
TCGA.AG.4009.01A	1	156126177	156203371	18	-0.6501	SMALL-LOSS	FOCAL	4	"PMF1,PMF1-BGLAP,SEMA4A,SLC25A44"
TCGA.CK.5914.01A	1	156237233	156281802	23	-0.5517	SMALL-LOSS	FOCAL	5	"CCT3,GLMP,SMG5,TMEM79,VHLL"
TCGA.AA.A00N.01A	1	156281802	156399105	29	-1.283	SMALL-LOSS	FOCAL	4	"C1orf61,CCT3,RHBG,TSACC"
TCGA.CK.5914.01A	1	156286909	156337498	12	-1.1867	SMALL-LOSS	FOCAL	2	"CCT3,TSACC"
TCGA.AA.A01Q.01A	1	156286909	156513718	48	-0.5202	SMALL-LOSS	FOCAL	6	"C1orf61,CCT3,IQGAP3,MEF2D,RHBG,TSACC"
TCGA.AG.A016.01A	1	156513718	156555457	21	-0.5511	SMALL-LOSS	FOCAL	2	"IQGAP3,TTC24"
TCGA.AF.3914.01A	1	156555457	156567804	10	-0.8455	SMALL-LOSS	FOCAL	3	"APOA1BP,GPATCH4,TTC24"
TCGA.AG.4009.01A	1	156561547	156567804	8	-1.1278	SMALL-LOSS	FOCAL	2	"APOA1BP,GPATCH4"
TCGA.AA.A00L.01A	1	156561547	156594861	13	-0.7818	SMALL-LOSS	FOCAL	3	"APOA1BP,GPATCH4,HAPLN2"
TCGA.AA.A01Q.01A	1	156561547	156707772	48	-0.6223	SMALL-LOSS	FOCAL	9	"APOA1BP,BCAN,CRABP2,GPATCH4,HAPLN2,ISG20L2,MRPL24,NES,RRNAD1"
TCGA.AA.A010.01A	1	156701756	156703799	5	-1.2165	SMALL-LOSS	FOCAL	1	RRNAD1
TCGA.AA.A01Q.01A	1	156811843	156828272	16	-1.1997	SMALL-LOSS	FOCAL	2	"INSRR,NTRK1"
TCGA.AA.A01Q.01A	1	156830676	156877983	24	-0.5154	SMALL-LOSS	FOCAL	2	"NTRK1,PEAR1"
TCGA.AF.3914.01A	1	156836637	156838248	3	-0.9282	SMALL-LOSS	FOCAL	1	NTRK1
TCGA.AF.4110	1	156847792	156859608	8	-0.7859	SMALL-LOSS	FOCAL	1	NTRK1
TCGA.AA.A01Q.01A	1	156878466	156884400	9	-0.9931	SMALL-LOSS	FOCAL	1	PEAR1
TCGA.AA.3982	1	157180881	157232017	21	-0.871	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3814	1	157274426	157688041	199	-0.5348	SMALL-LOSS	FOCAL	3	"FCRL3,FCRL4,FCRL5"
TCGA.AG.A025.01A	1	157776801	158227159	29	-0.9564	SMALL-LOSS	FOCAL	5	"CD1A,CD1D,CD5L,FCRL1,KIRREL"
TCGA.AG.3909.01A	1	158151197	158153674	4	-1.0467	SMALL-LOSS	FOCAL	1	CD1D
TCGA.AA.A00N.01A	1	158323711	158326541	6	-0.866	SMALL-LOSS	FOCAL	1	CD1E
TCGA.AA.3941	1	158332430	158680657	154	-0.5842	SMALL-LOSS	FOCAL	10	"OR10K1,OR10K2,OR10R2,OR10T2,OR10X1,OR10Z1,OR6K2,OR6P1,OR6Y1,SPTA1"
TCGA.AG.A01W.01A	1	158429162	158435340	8	-0.6592	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	1	158619615	158631025	8	-0.5868	SMALL-LOSS	FOCAL	1	SPTA1
TCGA.AG.A01W.01A	1	159448715	159458783	8	-0.7275	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	1	159825631	159832188	6	-0.9558	SMALL-LOSS	FOCAL	1	VSIG8
TCGA.AG.4009.01A	1	159826267	159832188	5	-0.9077	SMALL-LOSS	FOCAL	1	VSIG8
TCGA.AA.A00D.01A	1	159832188	159857579	9	-1.0253	SMALL-LOSS	FOCAL	2	"CFAP45,VSIG8"
TCGA.AG.3909.01A	1	159888541	159912741	21	-1.1611	SMALL-LOSS	FOCAL	2	"IGSF9,TAGLN2"
TCGA.AF.3914.01A	1	160053782	160064621	7	-0.9742	SMALL-LOSS	FOCAL	2	"IGSF8,KCNJ9"
TCGA.AG.4009.01A	1	160053782	160064621	7	-0.9249	SMALL-LOSS	FOCAL	2	"IGSF8,KCNJ9"
TCGA.AA.A01Q.01A	1	160053782	160068134	8	-0.8584	SMALL-LOSS	FOCAL	2	"IGSF8,KCNJ9"
TCGA.AG.A016.01A	1	160085559	160109413	17	-0.7257	SMALL-LOSS	FOCAL	1	ATP1A2
TCGA.AG.A02X.01A	1	160093696	160094887	3	-1.1045	SMALL-LOSS	FOCAL	1	ATP1A2
TCGA.AG.A02X.01A	1	160160492	160182849	13	-0.5396	SMALL-LOSS	FOCAL	2	"CASQ1,PEA15"
TCGA.AG.A016.01A	1	160163490	160165650	4	-0.7751	SMALL-LOSS	FOCAL	1	CASQ1
TCGA.AG.A016.01A	1	160968580	160970783	6	-0.7705	SMALL-LOSS	FOCAL	1	F11R
TCGA.CK.5914.01A	1	160990735	161018455	15	-0.9787	SMALL-LOSS	FOCAL	4	"ARHGAP30,F11R,TSTD1,USF1"
TCGA.AA.A01Q.01A	1	161009668	161012965	8	-0.8199	SMALL-LOSS	FOCAL	1	USF1
TCGA.AA.A010.01A	1	161009668	161018455	11	-0.649	SMALL-LOSS	FOCAL	2	"ARHGAP30,USF1"
TCGA.AG.3909.01A	1	161018838	161068306	18	-0.8463	SMALL-LOSS	FOCAL	3	"ARHGAP30,KLHDC9,PVRL4"
TCGA.AA.A00Q.01A	1	161039287	161088523	17	-0.999	SMALL-LOSS	FOCAL	5	"ARHGAP30,KLHDC9,NIT1,PFDN2,PVRL4"
TCGA.CK.5914.01A	1	161069098	161166252	49	-0.9839	SMALL-LOSS	FOCAL	9	"ADAMTS4,B4GALT3,DEDD,KLHDC9,NIT1,PFDN2,PPOX,UFC1,USP21"
TCGA.AA.A01Q.01A	1	161126687	161144735	27	-0.6329	SMALL-LOSS	FOCAL	4	"B4GALT3,PPOX,UFC1,USP21"
TCGA.AA.A00Q.01A	1	161127364	161143354	24	-0.9794	SMALL-LOSS	FOCAL	4	"B4GALT3,PPOX,UFC1,USP21"
TCGA.AA.A010.01A	1	161475204	161483617	6	-0.8292	SMALL-LOSS	FOCAL	1	FCGR2A
TCGA.AA.A00L.01A	1	161736092	161753763	4	-1.0784	SMALL-LOSS	FOCAL	1	ATF6
TCGA.F5.6863	1	162196498	162416757	117	-0.7166	SMALL-LOSS	FOCAL	4	"C1orf111,C1orf226,NOS1AP,SH2D1B"
TCGA.CK.5914.01A	1	162469695	162535831	7	-0.7716	SMALL-LOSS	FOCAL	2	"UAP1,UHMK1"
TCGA.AA.A00N.01A	1	162469695	162549166	9	-1.0695	SMALL-LOSS	FOCAL	2	"UAP1,UHMK1"
TCGA.AG.4009.01A	1	162535831	162551060	4	-0.683	SMALL-LOSS	FOCAL	1	UAP1
TCGA.AA.A00D.01A	1	162567518	162748353	17	-0.9598	SMALL-LOSS	FOCAL	2	"DDR2,UAP1"
TCGA.AA.A00N.01A	1	162773169	162782039	4	-1.1889	SMALL-LOSS	FOCAL	1	HSD17B7
TCGA.AA.A010.01A	1	163038666	163043194	5	-0.6033	SMALL-LOSS	FOCAL	1	RGS4
TCGA.AA.A00D.01A	1	163039054	163306494	15	-0.7572	SMALL-LOSS	FOCAL	3	"NUF2,RGS4,RGS5"
TCGA.AA.3819	1	163552657	163569353	5	-1.0751	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DC	1	164099721	164184996	42	-0.6385	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	1	164768904	165652177	40	-0.6993	SMALL-LOSS	FOCAL	6	"ALDH9A1,LMX1A,LRRC52,MGST3,PBX1,RXRG"
TCGA.AA.A010.01A	1	165630598	165638472	6	-0.7199	SMALL-LOSS	FOCAL	1	ALDH9A1
TCGA.AA.A00D.01A	1	165721271	166123909	14	-0.8659	SMALL-LOSS	FOCAL	3	"FAM78B,TMCO1,UCK2"
TCGA.AG.4009.01A	1	166135195	166963184	29	-0.5999	SMALL-LOSS	FOCAL	5	"FAM78B,ILDR2,MAEL,POGK,TADA1"
TCGA.AA.3667	1	166261523	166262122	3	-1.2993	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	166810144	166990858	34	-1.129	SMALL-LOSS	FOCAL	4	"ILDR2,MAEL,POGK,TADA1"
TCGA.AG.3909.01A	1	166826752	166990858	29	-0.8443	SMALL-LOSS	FOCAL	3	"ILDR2,MAEL,TADA1"
TCGA.AA.A00N.01A	1	167385225	167517212	12	-0.6675	SMALL-LOSS	FOCAL	3	"CD247,CREG1,POU2F1"
TCGA.AG.3909.01A	1	167400869	167517212	11	-0.6906	SMALL-LOSS	FOCAL	2	"CD247,CREG1"
TCGA.CK.5914.01A	1	167400869	167806423	34	-0.5386	SMALL-LOSS	FOCAL	5	"ADCY10,CD247,CREG1,MPZL1,RCSD1"
TCGA.AG.3909.01A	1	167778868	167798474	7	-1.2673	SMALL-LOSS	FOCAL	1	ADCY10
TCGA.AG.3906.01A	1	167971700	167992154	4	-0.655	SMALL-LOSS	FOCAL	1	DCAF6
TCGA.AG.3909.01A	1	167971700	168044565	13	-0.9815	SMALL-LOSS	FOCAL	1	DCAF6
TCGA.AA.A00N.01A	1	168007562	168044565	10	-0.5268	SMALL-LOSS	FOCAL	1	DCAF6
TCGA.AA.A00N.01A	1	168153149	168215884	15	-1.1364	SMALL-LOSS	FOCAL	2	"SFT2D2,TIPRL"
TCGA.AG.4009.01A	1	168169100	168208282	6	-0.6379	SMALL-LOSS	FOCAL	2	"SFT2D2,TIPRL"
TCGA.AG.3909.01A	1	169435078	169446345	5	-0.9876	SMALL-LOSS	FOCAL	1	SLC19A2
TCGA.CK.5914.01A	1	169435078	169446345	5	-0.7063	SMALL-LOSS	FOCAL	1	SLC19A2
TCGA.CK.5914.01A	1	169761690	169792481	9	-0.5863	SMALL-LOSS	FOCAL	2	"C1orf112,METTL18"
TCGA.AA.3930.01A	1	169816784	169828135	9	-0.5692	SMALL-LOSS	FOCAL	2	"C1orf112,SCYL3"
TCGA.AA.A010.01A	1	169820906	169839345	11	-0.588	SMALL-LOSS	FOCAL	2	"C1orf112,SCYL3"
TCGA.AA.A00N.01A	1	169835994	169890765	8	-0.8651	SMALL-LOSS	FOCAL	2	"KIFAP3,SCYL3"
TCGA.CK.5914.01A	1	169839345	169890765	6	-0.9444	SMALL-LOSS	FOCAL	2	"KIFAP3,SCYL3"
TCGA.AG.3909.01A	1	169842769	169890765	5	-1.288	SMALL-LOSS	FOCAL	2	"KIFAP3,SCYL3"
TCGA.AG.4009.01A	1	171673574	171679813	4	-0.6375	SMALL-LOSS	FOCAL	1	VAMP4
TCGA.AG.3909.01A	1	171673574	171752828	9	-0.8795	SMALL-LOSS	FOCAL	2	"METTL13,VAMP4"
TCGA.CK.5914.01A	1	171697586	171763484	9	-0.5251	SMALL-LOSS	FOCAL	2	"METTL13,VAMP4"
TCGA.EI.6512	1	171984502	172501642	193	-1.1008	SMALL-LOSS	FOCAL	4	"C1orf105,DNM3,PIGC,SUCO"
TCGA.EI.6508	1	172057218	172333247	98	-0.793	SMALL-LOSS	FOCAL	1	DNM3
TCGA.AG.3909.01A	1	172501621	172554957	16	-1.1451	SMALL-LOSS	FOCAL	1	SUCO
TCGA.AA.A010.01A	1	172520610	172560076	17	-0.9101	SMALL-LOSS	FOCAL	1	SUCO
TCGA.AG.4009.01A	1	172526370	172560076	14	-0.9185	SMALL-LOSS	FOCAL	1	SUCO
TCGA.CK.5914.01A	1	172538131	172548278	8	-1.2158	SMALL-LOSS	FOCAL	1	SUCO
TCGA.AG.A01L.01A	1	172544621	172548278	4	-0.8752	SMALL-LOSS	FOCAL	1	SUCO
TCGA.AA.A010.01A	1	173157588	173176131	3	-0.5188	SMALL-LOSS	FOCAL	1	TNFSF4
TCGA.AA.A00N.01A	1	173446484	173456826	5	-0.5843	SMALL-LOSS	FOCAL	1	PRDX6
TCGA.AA.A00N.01A	1	173556757	173596162	7	-0.7015	SMALL-LOSS	FOCAL	2	"ANKRD45,SLC9C2"
TCGA.CK.5914.01A	1	173794330	173842583	19	-0.7253	SMALL-LOSS	FOCAL	2	"DARS2,ZBTB37"
TCGA.AA.A00N.01A	1	173819428	173842583	7	-0.767	SMALL-LOSS	FOCAL	2	"DARS2,ZBTB37"
TCGA.AD.6890	1	174794143	174905910	16	-0.8628	SMALL-LOSS	FOCAL	1	RABGAP1L
TCGA.AA.A00N.01A	1	174947889	175067421	21	-0.7235	SMALL-LOSS	FOCAL	4	"CACYBP,MRPS14,RABGAP1L,TNN"
TCGA.AG.3909.01A	1	174973698	175087685	18	-0.9584	SMALL-LOSS	FOCAL	3	"CACYBP,MRPS14,TNN"
TCGA.AA.A010.01A	1	174977693	175066516	12	-0.8405	SMALL-LOSS	FOCAL	3	"CACYBP,MRPS14,TNN"
TCGA.AA.A00D.01A	1	175096054	176153699	48	-0.6868	SMALL-LOSS	FOCAL	4	"KIAA0040,RFWD2,TNN,TNR"
TCGA.G4.6295	1	175334683	175544146	127	-1.1519	SMALL-LOSS	FOCAL	1	TNR
TCGA.AA.A00D.01A	1	176833419	177250190	32	-0.8831	SMALL-LOSS	FOCAL	2	"ASTN1,BRINP2"
TCGA.AA.A00Q.01A	1	176833419	177250190	32	-0.604	SMALL-LOSS	FOCAL	2	"ASTN1,BRINP2"
TCGA.AA.A00L.01A	1	176833419	177898928	33	-0.627	SMALL-LOSS	FOCAL	3	"ASTN1,BRINP2,SEC16B"
TCGA.AY.A71X	1	177968615	178987416	245	-1.015	SMALL-LOSS	FOCAL	4	"ANGPTL1,RALGPS2,RASAL2,TEX35"
TCGA.AA.A00L.01A	1	178063579	178433364	16	-0.6038	SMALL-LOSS	FOCAL	1	RASAL2
TCGA.AG.A01W.01A	1	178221891	178433000	49	-0.6813	SMALL-LOSS	FOCAL	1	RASAL2
TCGA.AA.A01Q.01A	1	178482258	178490298	7	-0.649	SMALL-LOSS	FOCAL	1	TEX35
TCGA.AG.4009.01A	1	179012941	179023617	3	-1.2116	SMALL-LOSS	FOCAL	1	FAM20B
TCGA.AG.3909.01A	1	179012941	179090728	22	-0.5335	SMALL-LOSS	FOCAL	3	"ABL2,FAM20B,TOR3A"
TCGA.AA.A00N.01A	1	179012941	179112021	27	-0.8853	SMALL-LOSS	FOCAL	3	"ABL2,FAM20B,TOR3A"
TCGA.AA.A01C.01A	1	179086425	179271783	9	-0.6082	SMALL-LOSS	FOCAL	2	"ABL2,SOAT1"
TCGA.AG.4009.01A	1	179087670	179112021	7	-0.7571	SMALL-LOSS	FOCAL	1	ABL2
TCGA.AG.3909.01A	1	179112021	179271783	2	-0.7752	SMALL-LOSS	FOCAL	2	"ABL2,SOAT1"
TCGA.AA.A00N.01A	1	179317952	179414088	19	-0.7034	SMALL-LOSS	FOCAL	2	"AXDND1,SOAT1"
TCGA.AG.3909.01A	1	179335596	179414088	15	-0.6468	SMALL-LOSS	FOCAL	1	AXDND1
TCGA.AA.A010.01A	1	179363001	179401388	6	-1.0154	SMALL-LOSS	FOCAL	1	AXDND1
TCGA.AG.4009.01A	1	179364186	179398602	3	-0.6272	SMALL-LOSS	FOCAL	1	AXDND1
TCGA.AG.4009.01A	1	179520306	179564746	10	-0.5388	SMALL-LOSS	FOCAL	3	"AXDND1,NPHS2,TDRD5"
TCGA.AA.3850	1	179681195	179690599	7	-1.10785	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01C.01A	1	179851596	179883085	9	-0.7761	SMALL-LOSS	FOCAL	1	TOR1AIP1
TCGA.AA.A01Q.01A	1	180144378	180217390	14	-0.6729	SMALL-LOSS	FOCAL	2	"LHX4,QSOX1"
TCGA.AA.A00N.01A	1	180971693	181452869	12	-0.999	SMALL-LOSS	FOCAL	4	"CACNA1E,IER5,MR1,STX6"
TCGA.AG.3909.01A	1	181003091	181452869	9	-1.1873	SMALL-LOSS	FOCAL	3	"CACNA1E,IER5,MR1"
TCGA.CK.5914.01A	1	181003091	181452869	9	-0.7057	SMALL-LOSS	FOCAL	3	"CACNA1E,IER5,MR1"
TCGA.AA.3850	1	181241634	181251613	4	-0.79815	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2678	1	181771991	181848013	40	-0.5427	SMALL-LOSS	FOCAL	1	CACNA1E
TCGA.AA.A00N.01A	1	182025460	182423063	10	-1.0298	SMALL-LOSS	FOCAL	4	"GLUL,RGSL1,TEDDM1,ZNF648"
TCGA.AA.A010.01A	1	182429087	182509344	12	-0.9404	SMALL-LOSS	FOCAL	1	RGSL1
TCGA.AA.A00N.01A	1	182491127	182501746	5	-1.0655	SMALL-LOSS	FOCAL	1	RGSL1
TCGA.AA.A00N.01A	1	182763441	182829086	21	-0.7828	SMALL-LOSS	FOCAL	2	"DHX9,NPL"
TCGA.AA.A00N.01A	1	182898732	182992801	6	-1.2503	SMALL-LOSS	FOCAL	2	"LAMC1,SHCBP1L"
TCGA.DY.A1H8	1	183013798	183052532	12	-0.9156	SMALL-LOSS	FOCAL	1	LAMC1
TCGA.AA.A00N.01A	1	183592511	183775477	9	-0.6885	SMALL-LOSS	FOCAL	3	"APOBEC4,ARPC5,RGL1"
TCGA.AG.3909.01A	1	183596607	183775477	8	-0.5574	SMALL-LOSS	FOCAL	3	"APOBEC4,ARPC5,RGL1"
TCGA.AA.A00N.01A	1	184006222	184041880	7	-1.0429	SMALL-LOSS	FOCAL	2	"COLGALT2,TSEN15"
TCGA.AG.3909.01A	1	185106729	185135693	12	-0.7929	SMALL-LOSS	FOCAL	2	"SWT1,TRMT1L"
TCGA.AA.A00N.01A	1	185106729	185137400	13	-0.9146	SMALL-LOSS	FOCAL	2	"SWT1,TRMT1L"
TCGA.CK.5914.01A	1	185112432	185143465	11	-0.6646	SMALL-LOSS	FOCAL	2	"SWT1,TRMT1L"
TCGA.AG.3909.01A	1	185267126	185703925	11	-0.8397	SMALL-LOSS	FOCAL	2	"HMCN1,IVNS1ABP"
TCGA.CK.5914.01A	1	185274617	185703925	7	-0.6788	SMALL-LOSS	FOCAL	2	"HMCN1,IVNS1ABP"
TCGA.DM.A1DB	1	185915390	188240117	732	-0.7312	SMALL-LOSS	FOCAL	8	"C1orf27,HMCN1,OCLM,PDC,PLA2G4A,PRG4,PTGS2,TPR"
TCGA.AA.A010.01A	1	185988644	186064333	32	-0.6997	SMALL-LOSS	FOCAL	1	HMCN1
TCGA.AA.A01Q.01A	1	186043836	186064333	14	-0.5322	SMALL-LOSS	FOCAL	1	HMCN1
TCGA.AA.A00F.01A	1	186113635	186114838	3	-0.606	SMALL-LOSS	FOCAL	1	HMCN1
TCGA.AG.3909.01A	1	186265964	186275423	6	-0.6171	SMALL-LOSS	FOCAL	1	PRG4
TCGA.AG.3906.01A	1	186270677	186278902	8	-0.8253	SMALL-LOSS	FOCAL	1	PRG4
TCGA.AG.3891.01A	1	186275423	186276998	4	-1.3123	SMALL-LOSS	FOCAL	1	PRG4
TCGA.AG.A025.01A	1	186316396	186360777	27	-0.5292	SMALL-LOSS	FOCAL	2	"C1orf27,TPR"
TCGA.CK.5914.01A	1	186329856	186648162	34	-0.7048	SMALL-LOSS	FOCAL	5	"C1orf27,OCLM,PDC,PTGS2,TPR"
TCGA.AG.3909.01A	1	186330707	186359802	14	-0.8967	SMALL-LOSS	FOCAL	2	"C1orf27,TPR"
TCGA.AA.3549	1	186499535	187239317	229	-0.6885	SMALL-LOSS	FOCAL	2	"PLA2G4A,PTGS2"
TCGA.AG.3909.01A	1	186643478	186648162	7	-1.1805	SMALL-LOSS	FOCAL	1	PTGS2
TCGA.AA.A01Q.01A	1	186644353	186648162	6	-0.5155	SMALL-LOSS	FOCAL	1	PTGS2
TCGA.AA.A010.01A	1	186901848	186919768	5	-0.7593	SMALL-LOSS	FOCAL	1	PLA2G4A
TCGA.EI.7004	1	186924258	186933763	3	-1.0307	SMALL-LOSS	FOCAL	1	PLA2G4A
TCGA.CA.6715	1	188512441	188793471	69	-0.8555	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1H8	1	188610071	188753070	40	-0.9597	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6511	1	189027222	189031360	4	-1.129	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	1	189258908	189292307	9	-0.8601	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A0XD	1	189292307	189844352	167	-0.5596	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3952	1	189703187	190056554	141	-0.6602	SMALL-LOSS	FOCAL	0	None
TCGA.RU.A8FL	1	189774644	189775592	4	-0.7337	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3726	1	190994738	194543282	968	-0.609	SMALL-LOSS	FOCAL	10	"B3GALT2,CDC73,GLRX2,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5"
TCGA.D5.6533	1	191395153	191491961	30	-0.9022	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	192150372	192627281	14	-0.7958	SMALL-LOSS	FOCAL	4	"RGS1,RGS13,RGS18,RGS21"
TCGA.EI.6513	1	192331106	192896433	221	-0.8267	SMALL-LOSS	FOCAL	4	"RGS1,RGS13,RGS2,RGS21"
TCGA.CK.5914.01A	1	192778154	192780505	4	-0.9322	SMALL-LOSS	FOCAL	1	RGS2
TCGA.AG.4021	1	192957901	193126440	21	-0.6492	SMALL-LOSS	FOCAL	4	"CDC73,GLRX2,TROVE2,UCHL5"
TCGA.AA.A00N.01A	1	193044913	193116960	21	-0.8612	SMALL-LOSS	FOCAL	3	"CDC73,GLRX2,TROVE2"
TCGA.AG.3909.01A	1	193060737	193107163	11	-1.1443	SMALL-LOSS	FOCAL	3	"CDC73,GLRX2,TROVE2"
TCGA.CK.5914.01A	1	193065713	193105577	9	-0.9019	SMALL-LOSS	FOCAL	2	"CDC73,GLRX2"
TCGA.AA.A00D.01A	1	193119384	196795907	65	-0.7085	SMALL-LOSS	FOCAL	6	"B3GALT2,CDC73,CFH,CFHR1,CFHR3,KCNT2"
TCGA.F4.6459	1	193150872	193187234	3	-0.5943	SMALL-LOSS	FOCAL	2	"B3GALT2,CDC73"
TCGA.DM.A1D9	1	193175932	193239403	3	-1.3171	SMALL-LOSS	FOCAL	1	CDC73
TCGA.AG.3882	1	195939911	195940508	4	-0.9125	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	196642940	196697464	13	-0.8742	SMALL-LOSS	FOCAL	1	CFH
TCGA.AA.A010.01A	1	197021723	197093971	25	-0.6282	SMALL-LOSS	FOCAL	2	"ASPM,F13B"
TCGA.AG.3909.01A	1	197097573	197113050	12	-0.8337	SMALL-LOSS	FOCAL	1	ASPM
TCGA.AA.A00N.01A	1	197101347	197113050	9	-1.0559	SMALL-LOSS	FOCAL	1	ASPM
TCGA.AA.A02H.01A	1	197104205	197113050	7	-0.5719	SMALL-LOSS	FOCAL	1	ASPM
TCGA.AG.3909.01A	1	197313363	197390159	4	-1.1395	SMALL-LOSS	FOCAL	1	CRB1
TCGA.AA.3971	1	197734898	198152758	141	-0.5872	SMALL-LOSS	FOCAL	4	"C1orf53,DENND1B,LHX9,NEK7"
TCGA.CK.5914.01A	1	197741934	197886447	6	-1.2244	SMALL-LOSS	FOCAL	3	"C1orf53,DENND1B,LHX9"
TCGA.AG.A01L.01A	1	198691519	198717227	11	-0.6702	SMALL-LOSS	FOCAL	1	PTPRC
TCGA.AA.A010.01A	1	198697427	199996907	18	-0.8336	SMALL-LOSS	FOCAL	2	"NR5A2,PTPRC"
TCGA.AG.3909.01A	1	199996907	200377936	15	-0.7964	SMALL-LOSS	FOCAL	2	"NR5A2,ZNF281"
TCGA.AA.3982	1	200079585	200079958	3	-1.1093	SMALL-LOSS	FOCAL	1	NR5A2
TCGA.AA.3850	1	200137805	200143280	8	-1.10845	SMALL-LOSS	FOCAL	1	NR5A2
TCGA.AA.3941	1	200137805	200145532	10	-0.5317	SMALL-LOSS	FOCAL	1	NR5A2
TCGA.AG.A01W.01A	1	200231858	200241258	7	-0.6019	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	1	200555182	200570972	9	-1.0168	SMALL-LOSS	FOCAL	1	KIF14
TCGA.CK.5914.01A	1	200574941	200708929	17	-0.6717	SMALL-LOSS	FOCAL	3	"CAMSAP2,DDX59,KIF14"
TCGA.AA.A00N.01A	1	200619501	200708929	5	-1.2293	SMALL-LOSS	FOCAL	2	"CAMSAP2,DDX59"
TCGA.AG.3909.01A	1	200633006	200708929	3	-1.0496	SMALL-LOSS	FOCAL	2	"CAMSAP2,DDX59"
TCGA.AA.A010.01A	1	200708929	200826875	19	-0.7204	SMALL-LOSS	FOCAL	1	CAMSAP2
TCGA.AG.4009.01A	1	200821617	200860640	8	-0.5955	SMALL-LOSS	FOCAL	3	"C1orf106,CAMSAP2,GPR25"
TCGA.AA.A00N.01A	1	200821617	200882613	17	-0.6661	SMALL-LOSS	FOCAL	3	"C1orf106,CAMSAP2,GPR25"
TCGA.AA.A01Q.01A	1	200842138	201013424	45	-0.5248	SMALL-LOSS	FOCAL	4	"C1orf106,CACNA1S,GPR25,KIF21B"
TCGA.AG.3909.01A	1	200867403	200944579	12	-1.0193	SMALL-LOSS	FOCAL	2	"C1orf106,KIF21B"
TCGA.AA.A010.01A	1	200965273	200971247	6	-0.6821	SMALL-LOSS	FOCAL	1	KIF21B
TCGA.AA.A010.01A	1	201013424	201021632	8	-0.6786	SMALL-LOSS	FOCAL	1	CACNA1S
TCGA.AA.A01Q.01A	1	201016206	201031034	15	-1.2547	SMALL-LOSS	FOCAL	1	CACNA1S
TCGA.AA.A01Q.01A	1	201031520	201112930	25	-0.6248	SMALL-LOSS	FOCAL	3	"ASCL5,CACNA1S,TMEM9"
TCGA.AG.3891.01A	1	201181753	201187621	7	-0.7372	SMALL-LOSS	FOCAL	1	IGFN1
TCGA.AG.3906.01A	1	201181753	201187621	7	-0.6007	SMALL-LOSS	FOCAL	1	IGFN1
TCGA.AA.A01C.01A	1	201197421	201263021	3	-0.5985	SMALL-LOSS	FOCAL	2	"IGFN1,PKP1"
TCGA.AA.A00D.01A	1	201287709	201352150	28	-0.8044	SMALL-LOSS	FOCAL	3	"LAD1,PKP1,TNNT2"
TCGA.AA.A01Q.01A	1	201292102	201681898	43	-0.6627	SMALL-LOSS	FOCAL	7	"CSRP1,LAD1,NAV1,PHLDA3,PKP1,TNNI1,TNNT2"
TCGA.D5.6923	1	201333702	201335898	3	-0.7573	SMALL-LOSS	FOCAL	1	TNNT2
TCGA.AF.4110	1	201729909	201945209	60	-0.5282	SMALL-LOSS	FOCAL	5	"IPO9,LMOD1,NAV1,SHISA4,TIMM17A"
TCGA.AA.A010.01A	1	201816336	201845035	22	-0.5734	SMALL-LOSS	FOCAL	1	IPO9
TCGA.AA.A00L.01A	1	201858525	201860855	4	-1.1201	SMALL-LOSS	FOCAL	1	SHISA4
TCGA.AF.3914.01A	1	201859530	201869264	6	-0.8978	SMALL-LOSS	FOCAL	2	"LMOD1,SHISA4"
TCGA.AG.4009.01A	1	202096827	202194497	19	-0.5796	SMALL-LOSS	FOCAL	4	"ARL8A,GPR37L1,LGR6,PTPN7"
TCGA.AA.A01Q.01A	1	202103523	202126828	13	-0.6297	SMALL-LOSS	FOCAL	2	"ARL8A,PTPN7"
TCGA.AG.3909.01A	1	202406921	202418070	4	-0.9447	SMALL-LOSS	FOCAL	1	PPP1R12B
TCGA.AA.A010.01A	1	202698125	202704510	6	-0.9017	SMALL-LOSS	FOCAL	1	KDM5B
TCGA.CK.5914.01A	1	202698125	202719735	15	-0.8458	SMALL-LOSS	FOCAL	1	KDM5B
TCGA.AG.4009.01A	1	202698125	202722005	16	-1.0803	SMALL-LOSS	FOCAL	1	KDM5B
TCGA.AF.3914.01A	1	202709751	202711751	4	-0.9708	SMALL-LOSS	FOCAL	1	KDM5B
TCGA.AG.3909.01A	1	202719735	202727471	5	-0.5962	SMALL-LOSS	FOCAL	1	KDM5B
TCGA.AA.A010.01A	1	202719735	202736013	9	-0.824	SMALL-LOSS	FOCAL	1	KDM5B
TCGA.AA.3518	1	202861565	202878491	3	-0.9038	SMALL-LOSS	FOCAL	1	KLHL12
TCGA.CK.5914.01A	1	202887262	202991963	26	-0.8505	SMALL-LOSS	FOCAL	5	"ADIPOR1,CYB5R1,KLHL12,TMEM183A,TMEM183B"
TCGA.AF.3914.01A	1	202931614	202935591	7	-0.7888	SMALL-LOSS	FOCAL	1	CYB5R1
TCGA.AG.4009.01A	1	202931614	202976849	9	-0.9201	SMALL-LOSS	FOCAL	3	"CYB5R1,TMEM183A,TMEM183B"
TCGA.AA.A01C.01A	1	203702340	203817410	18	-0.915	SMALL-LOSS	FOCAL	4	"ATP2B4,LAX1,ZBED6,ZC3H11A"
TCGA.AG.3909.01A	1	203786129	203802850	7	-0.5263	SMALL-LOSS	FOCAL	1	ZC3H11A
TCGA.AA.A00N.01A	1	203797380	203821231	13	-1.0528	SMALL-LOSS	FOCAL	1	ZC3H11A
TCGA.AG.3909.01A	1	203807046	203821231	8	-1.2764	SMALL-LOSS	FOCAL	1	ZC3H11A
TCGA.AG.4009.01A	1	203807046	203832751	11	-0.8065	SMALL-LOSS	FOCAL	2	"SNRPE,ZC3H11A"
TCGA.AZ.4684.01A	1	203807046	203838936	13	-0.5707	SMALL-LOSS	FOCAL	2	"SNRPE,ZC3H11A"
TCGA.D5.5538	1	203924762	204216409	129	-0.5373	SMALL-LOSS	FOCAL	6	"ETNK2,GOLT1A,KISS1,PLEKHA6,REN,SOX13"
TCGA.AA.A00N.01A	1	204101249	204167527	22	-0.6425	SMALL-LOSS	FOCAL	4	"ETNK2,GOLT1A,KISS1,REN"
TCGA.AA.A01Q.01A	1	204103611	204167527	19	-0.5528	SMALL-LOSS	FOCAL	4	"ETNK2,GOLT1A,KISS1,REN"
TCGA.AF.3914.01A	1	204106194	204126407	11	-0.8387	SMALL-LOSS	FOCAL	2	"ETNK2,REN"
TCGA.AG.4009.01A	1	204106194	204159604	17	-0.7427	SMALL-LOSS	FOCAL	3	"ETNK2,KISS1,REN"
TCGA.AY.5543	1	204288075	204452246	73	-0.6112	SMALL-LOSS	FOCAL	3	"PIK3C2B,PLEKHA6,PPP1R15B"
TCGA.AG.3909.01A	1	204375204	204379772	4	-0.6819	SMALL-LOSS	FOCAL	1	PPP1R15B
TCGA.CK.5914.01A	1	204375204	204403520	14	-0.586	SMALL-LOSS	FOCAL	2	"PIK3C2B,PPP1R15B"
TCGA.AA.A00N.01A	1	204494594	204518234	12	-0.5926	SMALL-LOSS	FOCAL	1	MDM4
TCGA.AA.A010.01A	1	205197671	205225405	4	-1.2502	SMALL-LOSS	FOCAL	1	TMCC2
TCGA.AG.3909.01A	1	205210584	205496895	29	-0.7382	SMALL-LOSS	FOCAL	5	"CDK18,KLHDC8A,LEMD1,NUAK2,TMCC2"
TCGA.AA.A01Q.01A	1	205238066	205538159	34	-0.5395	SMALL-LOSS	FOCAL	6	"CDK18,KLHDC8A,LEMD1,MFSD4,NUAK2,TMCC2"
TCGA.AA.A010.01A	1	205388330	205417392	3	-0.5632	SMALL-LOSS	FOCAL	1	LEMD1
TCGA.AA.A010.01A	1	205538159	205569515	10	-0.7379	SMALL-LOSS	FOCAL	1	MFSD4
TCGA.AA.A00N.01A	1	205568217	205741559	21	-0.5709	SMALL-LOSS	FOCAL	5	"ELK4,MFSD4,NUCKS1,RAB29,SLC45A3"
TCGA.AG.3909.01A	1	205588045	205743929	18	-0.7518	SMALL-LOSS	FOCAL	4	"ELK4,NUCKS1,RAB29,SLC45A3"
TCGA.AA.A010.01A	1	205628355	205698628	10	-0.6434	SMALL-LOSS	FOCAL	2	"NUCKS1,SLC45A3"
TCGA.AG.3909.01A	1	206139257	206241492	9	-0.6935	SMALL-LOSS	FOCAL	4	"AVPR1B,C1orf186,FAM72A,FAM72C"
TCGA.AA.A00N.01A	1	206139257	206243401	11	-0.9269	SMALL-LOSS	FOCAL	4	"AVPR1B,C1orf186,FAM72A,FAM72C"
TCGA.AG.3909.01A	1	206769019	206820716	15	-1.1078	SMALL-LOSS	FOCAL	2	"DYRK3,EIF2D"
TCGA.AA.A00N.01A	1	206769019	206821892	17	-0.961	SMALL-LOSS	FOCAL	2	"DYRK3,EIF2D"
TCGA.CK.5914.01A	1	206781537	206821892	8	-0.8457	SMALL-LOSS	FOCAL	2	"DYRK3,EIF2D"
TCGA.AA.A02K.01A	1	206902026	206905869	8	-0.5643	SMALL-LOSS	FOCAL	1	MAPKAPK2
TCGA.AA.A00N.01A	1	207040666	207095095	15	-0.5565	SMALL-LOSS	FOCAL	3	"FCMR,IL20,IL24"
TCGA.AG.3909.01A	1	207074791	207106314	13	-0.5635	SMALL-LOSS	FOCAL	3	"FCMR,IL24,PIGR"
TCGA.CK.5914.01A	1	207222355	207238359	9	-0.5452	SMALL-LOSS	FOCAL	2	"PFKFB2,YOD1"
TCGA.AG.3909.01A	1	207222355	207242722	12	-0.5173	SMALL-LOSS	FOCAL	2	"PFKFB2,YOD1"
TCGA.CK.5914.01A	1	207495521	207504433	5	-1.0246	SMALL-LOSS	FOCAL	1	CD55
TCGA.AA.A00N.01A	1	207495521	207684880	29	-1.0535	SMALL-LOSS	FOCAL	3	"CD55,CR1,CR2"
TCGA.AG.3909.01A	1	207509991	207684880	24	-0.6947	SMALL-LOSS	FOCAL	3	"CD55,CR1,CR2"
TCGA.CK.5914.01A	1	207930332	207940356	5	-0.9053	SMALL-LOSS	FOCAL	1	CD46
TCGA.AG.3726	1	207980900	208437820	237	-0.5785	SMALL-LOSS	FOCAL	2	"CD34,PLXNA2"
TCGA.AA.3549	1	208358990	208670056	183	-0.8356	SMALL-LOSS	FOCAL	1	PLXNA2
TCGA.AG.3726	1	208457919	209649129	544	-0.6534	SMALL-LOSS	FOCAL	1	MIR205HG
TCGA.CM.6170	1	208543182	208762065	121	-1.2014	SMALL-LOSS	FOCAL	0	None
TCGA.CI.6622	1	209083017	209540090	175	-0.5249	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6533	1	209544262	209764992	109	-0.6186	SMALL-LOSS	FOCAL	2	"CAMK1G,MIR205HG"
TCGA.AA.A01Q.01A	1	209768293	209795863	17	-0.6111	SMALL-LOSS	FOCAL	2	"CAMK1G,LAMB3"
TCGA.AA.A010.01A	1	210003374	210414886	24	-1.057	SMALL-LOSS	FOCAL	3	"DIEXF,SERTAD4,SYT14"
TCGA.AG.3909.01A	1	210411274	210560760	6	-0.9329	SMALL-LOSS	FOCAL	2	"HHAT,SERTAD4"
TCGA.AG.A01W.01A	1	211201079	211213881	5	-0.8135	SMALL-LOSS	FOCAL	1	KCNH1
TCGA.AG.3909.01A	1	212179954	212194378	6	-1.1044	SMALL-LOSS	FOCAL	1	INTS7
TCGA.AG.A01Y	1	212235181	212518121	91	-0.7372	SMALL-LOSS	FOCAL	2	"DTL,PPP2R5A"
TCGA.AA.3941	1	212248219	212255257	6	-0.7842	SMALL-LOSS	FOCAL	1	DTL
TCGA.AA.A00N.01A	1	212583718	212860131	11	-0.5226	SMALL-LOSS	FOCAL	5	"ATF3,BATF3,FAM71A,NENF,TMEM206"
TCGA.AG.3909.01A	1	212583718	212960851	18	-0.6641	SMALL-LOSS	FOCAL	6	"ATF3,BATF3,FAM71A,NENF,NSL1,TMEM206"
TCGA.CK.5914.01A	1	212615837	212988307	26	-0.7372	SMALL-LOSS	FOCAL	6	"ATF3,BATF3,FAM71A,NENF,NSL1,TATDN3"
TCGA.AF.3914.01A	1	212870256	212960851	7	-0.7871	SMALL-LOSS	FOCAL	2	"BATF3,NSL1"
TCGA.AZ.6598	1	213307455	213974248	246	-0.8619	SMALL-LOSS	FOCAL	1	RPS6KC1
TCGA.AZ.6599	1	213605354	213617737	6	-0.9036	SMALL-LOSS	FOCAL	0	None
TCGA.AF.4110	1	213759711	214014135	118	-0.5655	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	1	214787061	215768676	37	-0.5741	SMALL-LOSS	FOCAL	3	"CENPF,KCNK2,KCTD3"
TCGA.AA.A010.01A	1	214802347	215179182	15	-1.2912	SMALL-LOSS	FOCAL	2	"CENPF,KCNK2"
TCGA.AA.3549	1	214976492	215797020	247	-0.7018	SMALL-LOSS	FOCAL	3	"KCNK2,KCTD3,USH2A"
TCGA.AA.A010.01A	1	215297926	215759801	14	-0.7457	SMALL-LOSS	FOCAL	2	"KCNK2,KCTD3"
TCGA.DY.A1H8	1	215406995	216745598	435	-0.9703	SMALL-LOSS	FOCAL	4	"ESRRG,KCNK2,KCTD3,USH2A"
TCGA.AG.3909.01A	1	215747099	215759801	8	-0.9003	SMALL-LOSS	FOCAL	1	KCTD3
TCGA.AA.A00D.01A	1	215799070	217622544	78	-0.8604	SMALL-LOSS	FOCAL	3	"ESRRG,GPATCH2,USH2A"
TCGA.AA.3549	1	216838397	216987292	86	-0.6968	SMALL-LOSS	FOCAL	1	ESRRG
TCGA.AA.3549	1	216995156	217291249	184	-0.6551	SMALL-LOSS	FOCAL	1	ESRRG
TCGA.AA.A00D.01A	1	217664989	220205727	65	-0.5452	SMALL-LOSS	FOCAL	7	"EPRS,GPATCH2,LYPLAL1,RRP15,SLC30A10,SPATA17,TGFB2"
TCGA.AA.3549	1	217750247	218233503	168	-0.7134	SMALL-LOSS	FOCAL	2	"GPATCH2,SPATA17"
TCGA.AZ.6599	1	218139005	218142818	6	-0.758	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3549	1	218251691	218261631	11	-0.9209	SMALL-LOSS	FOCAL	0	None
TCGA.AF.4110	1	218872623	219343804	160	-0.5271	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	219352437	220100310	7	-0.8143	SMALL-LOSS	FOCAL	2	"LYPLAL1,SLC30A10"
TCGA.AA.3850	1	220043322	220068843	7	-1.14965	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	220192279	220291147	29	-0.5802	SMALL-LOSS	FOCAL	3	"BPNT1,EPRS,IARS2"
TCGA.AA.A00N.01A	1	220197589	220291440	28	-0.6647	SMALL-LOSS	FOCAL	3	"BPNT1,EPRS,IARS2"
TCGA.CK.5914.01A	1	220269434	220291440	10	-0.8904	SMALL-LOSS	FOCAL	1	IARS2
TCGA.AF.4110	1	220828129	221480856	242	-0.5541	SMALL-LOSS	FOCAL	5	"C1orf115,HLX,MARC1,MARC2,MARK1"
TCGA.AG.3909.01A	1	220869914	221055455	14	-0.884	SMALL-LOSS	FOCAL	4	"C1orf115,HLX,MARC1,MARC2"
TCGA.CK.5914.01A	1	220934953	220957176	5	-1.1095	SMALL-LOSS	FOCAL	1	2-Mar
TCGA.AF.4110	1	221808833	222335122	241	-0.5286	SMALL-LOSS	FOCAL	1	DUSP10
TCGA.AA.3850	1	221832869	221869186	16	-1.11475	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	1	221832869	221870113	18	-0.8704	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	1	221851422	221870113	13	-0.688	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	1	222761758	222806398	10	-1.0423	SMALL-LOSS	FOCAL	2	"MIA3,TAF1A"
TCGA.CK.5914.01A	1	222794479	222805460	7	-1.0517	SMALL-LOSS	FOCAL	1	MIA3
TCGA.AA.A00N.01A	1	222860232	222905917	18	-0.8736	SMALL-LOSS	FOCAL	2	"AIDA,BROX"
TCGA.AG.3909.01A	1	222867091	222904672	14	-0.7442	SMALL-LOSS	FOCAL	2	"AIDA,BROX"
TCGA.AF.4110	1	222951971	222985580	18	-0.8393	SMALL-LOSS	FOCAL	0	None
TCGA.AF.4110	1	223100292	223102866	2	-1.1592	SMALL-LOSS	FOCAL	1	DISP1
TCGA.AA.A010.01A	1	223853110	223931752	4	-0.713	SMALL-LOSS	FOCAL	2	"CAPN2,CAPN8"
TCGA.AA.A00N.01A	1	223900334	223962450	21	-0.7185	SMALL-LOSS	FOCAL	1	CAPN2
TCGA.AG.3909.01A	1	223931752	223949832	11	-0.9723	SMALL-LOSS	FOCAL	1	CAPN2
TCGA.AA.A00N.01A	1	224318146	224379997	8	-0.6184	SMALL-LOSS	FOCAL	2	"DEGS1,FBXO28"
TCGA.AA.A00N.01A	1	224514043	224804831	21	-0.5716	SMALL-LOSS	FOCAL	4	"CNIH3,CNIH4,NVL,WDR26"
TCGA.CK.5914.01A	1	225451843	225465062	8	-0.7312	SMALL-LOSS	FOCAL	1	DNAH14
TCGA.AZ.4684.01A	1	225592054	225607377	9	-0.7124	SMALL-LOSS	FOCAL	1	LBR
TCGA.AA.A00N.01A	1	225592054	225685409	12	-1.0664	SMALL-LOSS	FOCAL	2	"ENAH,LBR"
TCGA.AA.A01Q.01A	1	226036133	226065044	20	-0.8726	SMALL-LOSS	FOCAL	1	TMEM63A
TCGA.AA.A00N.01A	1	226054232	226496783	54	-0.5873	SMALL-LOSS	FOCAL	9	"ACBD3,H3F3A,LEFTY1,LEFTY2,LIN9,MIXL1,PYCR2,SDE2,TMEM63A"
TCGA.AG.3909.01A	1	226108108	226259005	19	-1.0194	SMALL-LOSS	FOCAL	4	"H3F3A,LEFTY2,PYCR2,SDE2"
TCGA.AA.A010.01A	1	226252036	226496783	27	-0.8222	SMALL-LOSS	FOCAL	4	"ACBD3,H3F3A,LIN9,MIXL1"
TCGA.AF.4110	1	226716478	226727903	4	-1.2526	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1HB	1	226749226	226766580	10	-0.5663	SMALL-LOSS	FOCAL	1	C1orf95
TCGA.AA.A01Q.01A	1	226822353	226836336	6	-0.8399	SMALL-LOSS	FOCAL	1	ITPKB
TCGA.AG.3909.01A	1	226825318	227068285	9	-0.7198	SMALL-LOSS	FOCAL	2	"ITPKB,PSEN2"
TCGA.AG.3891.01A	1	227149040	227172922	10	-0.6658	SMALL-LOSS	FOCAL	1	ADCK3
TCGA.AG.3906.01A	1	227152694	227170345	3	-0.9794	SMALL-LOSS	FOCAL	1	ADCK3
TCGA.AA.A010.01A	1	227174127	227213709	9	-0.5704	SMALL-LOSS	FOCAL	2	"ADCK3,CDC42BPA"
TCGA.AA.A00A.01A	1	227203739	227327270	24	-0.7941	SMALL-LOSS	FOCAL	1	CDC42BPA
TCGA.AA.A00L.01A	1	227203739	227335062	27	-0.8793	SMALL-LOSS	FOCAL	1	CDC42BPA
TCGA.AA.A01Q.01A	1	227299966	227348204	9	-0.6782	SMALL-LOSS	FOCAL	1	CDC42BPA
TCGA.AG.3906.01A	1	227968211	228109170	7	-0.5271	SMALL-LOSS	FOCAL	3	"PRSS38,SNAP47,WNT9A"
TCGA.AA.A010.01A	1	228109170	228327953	15	-0.6682	SMALL-LOSS	FOCAL	6	"ARF1,C1orf35,GUK1,MRPL55,WNT3A,WNT9A"
TCGA.AG.4009.01A	1	228284797	228402481	16	-0.9954	SMALL-LOSS	FOCAL	7	"ARF1,C1orf35,GJC2,GUK1,IBA57,MRPL55,OBSCN"
TCGA.AF.3914.01A	1	228345412	228403297	6	-1.09	SMALL-LOSS	FOCAL	3	"GJC2,IBA57,OBSCN"
TCGA.AA.A02K.01A	1	228399470	228401124	2	-0.9436	SMALL-LOSS	FOCAL	1	OBSCN
TCGA.AA.A010.01A	1	228434188	228482439	28	-0.7387	SMALL-LOSS	FOCAL	1	OBSCN
TCGA.DM.A28H	1	228968756	229288343	165	-0.6019	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	1	229675166	230313910	21	-0.5262	SMALL-LOSS	FOCAL	4	"ABCB10,GALNT2,TAF5L,URB2"
TCGA.AA.A010.01A	1	229770642	229786939	7	-1.2838	SMALL-LOSS	FOCAL	1	URB2
TCGA.A6.5656	1	230186010	231182688	494	-0.7955	SMALL-LOSS	FOCAL	9	"AGT,ARV1,C1orf198,CAPN9,COG2,FAM89A,GALNT2,PGBD5,TTC13"
TCGA.AA.3971	1	230322707	230653398	149	-0.5193	SMALL-LOSS	FOCAL	2	"GALNT2,PGBD5"
TCGA.AA.A010.01A	1	230795173	230819249	10	-0.5923	SMALL-LOSS	FOCAL	1	COG2
TCGA.AG.A011.01A	1	230827093	230845699	6	-0.7501	SMALL-LOSS	FOCAL	2	"AGT,COG2"
TCGA.AG.3909.01A	1	231069469	231132820	13	-0.5968	SMALL-LOSS	FOCAL	2	"ARV1,TTC13"
TCGA.AA.A00N.01A	1	231093918	231132820	7	-0.8567	SMALL-LOSS	FOCAL	2	"ARV1,TTC13"
TCGA.AG.4009.01A	1	231114820	231155546	6	-0.7242	SMALL-LOSS	FOCAL	2	"ARV1,FAM89A"
TCGA.AG.3909.01A	1	231359973	231488308	28	-0.6525	SMALL-LOSS	FOCAL	4	"C1orf131,EXOC8,GNPAT,SPRTN"
TCGA.AA.A00N.01A	1	231359973	231678159	38	-0.5873	SMALL-LOSS	FOCAL	6	"C1orf131,EGLN1,EXOC8,GNPAT,SPRTN,TSNAX"
TCGA.AG.3906.01A	1	231471302	231475476	4	-0.6386	SMALL-LOSS	FOCAL	2	"EXOC8,SPRTN"
TCGA.AG.3909.01A	1	231556693	231678159	5	-0.8565	SMALL-LOSS	FOCAL	2	"EGLN1,TSNAX"
TCGA.CA.6715	1	231716661	232300840	244	-0.8372	SMALL-LOSS	FOCAL	1	DISC1
TCGA.CM.6165.01A	1	231930924	231935834	2	-0.938	SMALL-LOSS	FOCAL	1	DISC1
TCGA.AG.3909.01A	1	232564110	232579302	6	-0.5891	SMALL-LOSS	FOCAL	1	SIPA1L2
TCGA.AG.3909.01A	1	232940731	233113876	7	-1.0965	SMALL-LOSS	FOCAL	2	"MAP10,NTPCR"
TCGA.AA.A00N.01A	1	232940731	233120023	10	-0.6542	SMALL-LOSS	FOCAL	3	"MAP10,NTPCR,PCNXL2"
TCGA.AA.3952	1	233268086	234402161	554	-0.6103	SMALL-LOSS	FOCAL	4	"KCNK1,KIAA1804,PCNXL2,SLC35F3"
TCGA.AA.A00L.01A	1	233489501	234509196	21	-0.7502	SMALL-LOSS	FOCAL	4	"COA6,KCNK1,KIAA1804,SLC35F3"
TCGA.AA.A00D.01A	1	233515026	234458752	13	-0.951	SMALL-LOSS	FOCAL	3	"KCNK1,KIAA1804,SLC35F3"
TCGA.AA.A00Q.01A	1	233515026	234458752	13	-0.787	SMALL-LOSS	FOCAL	3	"KCNK1,KIAA1804,SLC35F3"
TCGA.A6.2671	1	233892485	235647049	674	-0.6873	SMALL-LOSS	FOCAL	10	"ARID4B,B3GALNT2,COA6,GGPS1,IRF2BP2,RBM34,SLC35F3,TARBP1,TBCE,TOMM20"
TCGA.CA.6715	1	233999614	235518279	604	-0.8935	SMALL-LOSS	FOCAL	8	"ARID4B,COA6,GGPS1,IRF2BP2,RBM34,SLC35F3,TARBP1,TOMM20"
TCGA.A6.3808.01A	1	234509924	235611612	92	-1.0201	SMALL-LOSS	FOCAL	9	"ARID4B,B3GALNT2,COA6,GGPS1,IRF2BP2,RBM34,TARBP1,TBCE,TOMM20"
TCGA.CK.5914.01A	1	234586126	235291863	19	-0.5823	SMALL-LOSS	FOCAL	3	"IRF2BP2,TARBP1,TOMM20"
TCGA.AG.3909.01A	1	234595976	234743243	9	-0.5632	SMALL-LOSS	FOCAL	2	"IRF2BP2,TARBP1"
TCGA.AA.3979	1	234794424	234798093	5	-0.9941	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3952	1	235268016	235833300	122	-0.5265	SMALL-LOSS	FOCAL	8	"ARID4B,B3GALNT2,GGPS1,GNG4,LYST,RBM34,TBCE,TOMM20"
TCGA.AG.3909.01A	1	235275353	235291863	5	-1.1559	SMALL-LOSS	FOCAL	1	TOMM20
TCGA.AA.A00Q.01A	1	235331802	235423907	22	-0.6031	SMALL-LOSS	FOCAL	1	ARID4B
TCGA.DY.A1DG	1	235341009	236203279	221	-0.5404	SMALL-LOSS	FOCAL	7	"ARID4B,B3GALNT2,GGPS1,GNG4,LYST,NID1,TBCE"
TCGA.AA.A00D.01A	1	235341098	235383635	7	-1.1645	SMALL-LOSS	FOCAL	1	ARID4B
TCGA.AA.A00L.01A	1	235341098	235383635	7	-0.9864	SMALL-LOSS	FOCAL	1	ARID4B
TCGA.AA.A00A.01A	1	235341098	235418949	17	-0.9089	SMALL-LOSS	FOCAL	1	ARID4B
TCGA.AG.3909.01A	1	235490135	235505885	5	-0.8023	SMALL-LOSS	FOCAL	2	"ARID4B,GGPS1"
TCGA.CK.5914.01A	1	235490135	235564770	8	-1.1153	SMALL-LOSS	FOCAL	3	"ARID4B,GGPS1,TBCE"
TCGA.AA.3848	1	235701552	235705156	3	-0.933	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3693	1	235701552	235705672	5	-0.6216	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	1	236433145	236590681	5	-1.0174	SMALL-LOSS	FOCAL	2	"EDARADD,ERO1LB"
TCGA.AA.3977	1	236736563	236736750	3	-1.0866	SMALL-LOSS	FOCAL	1	HEATR1
TCGA.AA.3870	1	236736641	236736996	3	-0.7601	SMALL-LOSS	FOCAL	1	HEATR1
TCGA.AA.3864	1	236736641	236737932	4	-1.1688	SMALL-LOSS	FOCAL	1	HEATR1
TCGA.AA.3872	1	236736750	236737932	3	-1.152	SMALL-LOSS	FOCAL	1	HEATR1
TCGA.AA.3930.01A	1	237666550	237674940	3	-0.881	SMALL-LOSS	FOCAL	1	RYR2
TCGA.AG.3909.01A	1	237817526	237841279	9	-0.7695	SMALL-LOSS	FOCAL	1	RYR2
TCGA.CK.5914.01A	1	237817526	237843714	11	-0.7963	SMALL-LOSS	FOCAL	1	RYR2
TCGA.AG.A011.01A	1	237875015	237905586	10	-0.6523	SMALL-LOSS	FOCAL	1	RYR2
TCGA.AG.3909.01A	1	238045695	238051620	8	-0.9444	SMALL-LOSS	FOCAL	1	ZP4
TCGA.AG.3575	1	238212445	238864572	325	-0.6558	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2678	1	238215701	238441780	109	-0.6826	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	1	238305652	238362536	21	-1.0573	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	1	240428264	240449825	24	-1.03385	SMALL-LOSS	FOCAL	1	FMN2
TCGA.AA.A00N.01A	1	240635616	240990334	13	-0.7072	SMALL-LOSS	FOCAL	3	"FMN2,GREM2,RGS7"
TCGA.AA.3850	1	240665884	240666983	5	-0.90465	SMALL-LOSS	FOCAL	1	GREM2
TCGA.AA.A00Q.01A	1	241518941	241680445	10	-0.7827	SMALL-LOSS	FOCAL	2	"FH,RGS7"
TCGA.AA.A00N.01A	1	241669276	241695675	7	-1.0142	SMALL-LOSS	FOCAL	2	"FH,KMO"
TCGA.AG.3909.01A	1	241669276	241695675	6	-1.0647	SMALL-LOSS	FOCAL	2	"FH,KMO"
TCGA.AA.A010.01A	1	241753284	241850721	15	-0.7439	SMALL-LOSS	FOCAL	4	"CHML,KMO,OPN3,WDR64"
TCGA.AA.3850	1	241791116	241806978	12	-1.19725	SMALL-LOSS	FOCAL	2	"CHML,OPN3"
TCGA.CK.5914.01A	1	241797076	241823800	4	-0.6611	SMALL-LOSS	FOCAL	3	"CHML,OPN3,WDR64"
TCGA.AA.A00N.01A	1	241797076	241837909	6	-0.6105	SMALL-LOSS	FOCAL	3	"CHML,OPN3,WDR64"
TCGA.AA.3850	1	241981332	241983438	5	-0.82445	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	1	242013690	242024669	7	-1.1719	SMALL-LOSS	FOCAL	1	EXO1
TCGA.AG.3909.01A	1	242013690	242030124	8	-1.2726	SMALL-LOSS	FOCAL	1	EXO1
TCGA.AA.3994	1	242223342	242415587	101	-0.7147	SMALL-LOSS	FOCAL	1	PLD5
TCGA.AF.A56N	1	243049873	243124510	16	-0.8823	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3930.01A	1	243362334	244217038	38	-0.7559	SMALL-LOSS	FOCAL	4	"AKT3,CEP170,SDCCAG8,ZBTB18"
TCGA.AA.3979	1	243390824	243555218	32	-0.9953	SMALL-LOSS	FOCAL	2	"CEP170,SDCCAG8"
TCGA.AA.A00N.01A	1	244595811	244642952	10	-0.9885	SMALL-LOSS	FOCAL	2	"ADSS,C1orf101"
TCGA.CK.5914.01A	1	244999703	245020849	11	-1.0875	SMALL-LOSS	FOCAL	2	"COX20,HNRNPU"
TCGA.AG.4009.01A	1	245005215	245025716	13	-1.3038	SMALL-LOSS	FOCAL	2	"COX20,HNRNPU"
TCGA.CM.5864	1	245637038	245649650	7	-1.0263	SMALL-LOSS	FOCAL	1	KIF26B
TCGA.AA.3941	1	246294318	246300347	4	-1.0249	SMALL-LOSS	FOCAL	1	SMYD3
TCGA.AZ.4614	1	246364255	246433265	27	-0.8638	SMALL-LOSS	FOCAL	1	SMYD3
TCGA.AG.3909.01A	1	246490464	246907304	26	-0.5508	SMALL-LOSS	FOCAL	4	"CNST,SCCPDH,SMYD3,TFB2M"
TCGA.CK.5914.01A	1	246719834	246903434	18	-0.7383	SMALL-LOSS	FOCAL	3	"CNST,SCCPDH,TFB2M"
TCGA.DC.6683	1	246823856	246874874	19	-1.0422	SMALL-LOSS	FOCAL	1	CNST
TCGA.A6.6653	1	246840365	246885580	14	-0.9146	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6648	1	246845169	246873393	10	-0.6022	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	1	247061468	247109015	12	-1.293	SMALL-LOSS	FOCAL	2	"AHCTF1,ZNF695"
TCGA.AA.A00N.01A	1	247076492	247492439	32	-0.717	SMALL-LOSS	FOCAL	8	"AHCTF1,C1orf229,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.AG.3909.01A	1	247081504	247491963	25	-0.6756	SMALL-LOSS	FOCAL	8	"AHCTF1,C1orf229,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.CK.5914.01A	1	247150250	247491963	26	-0.6016	SMALL-LOSS	FOCAL	7	"C1orf229,VN1R5,ZNF124,ZNF496,ZNF669,ZNF670,ZNF695"
TCGA.F4.6570	1	247938747	248060540	58	-0.5322	SMALL-LOSS	FOCAL	4	"OR11L1,OR14A16,OR2W3,TRIM58"
TCGA.F4.6570	1	248060599	248079228	14	-1.0382	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GC	1	248595680	248613322	3	-1.1137	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A02X.01A	1	248789431	249210793	22	-0.6482	SMALL-LOSS	FOCAL	9	"LYPD8,OR14I1,OR2T11,OR2T27,OR2T35,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.A00N.01A	1	248844703	249152368	19	-0.8734	SMALL-LOSS	FOCAL	5	"LYPD8,OR14I1,SH3BP5L,ZNF672,ZNF692"
TCGA.AG.4009.01A	1	248844703	249210793	20	-0.7929	SMALL-LOSS	FOCAL	6	"LYPD8,OR14I1,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.A00Q.01A	1	249108596	249210793	16	-0.7201	SMALL-LOSS	FOCAL	4	"PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.CK.5914.01A	1	249111001	249213943	18	-0.8022	SMALL-LOSS	FOCAL	4	"PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.AA.3980.01A	1	249118910	249150450	9	-0.5159	SMALL-LOSS	FOCAL	3	"SH3BP5L,ZNF672,ZNF692"
TCGA.AA.A010.01A	1	249143024	249152368	9	-0.6	SMALL-LOSS	FOCAL	2	"ZNF672,ZNF692"
TCGA.AA.3544	2	21832	1474130	505	-0.6991	SMALL-LOSS	FOCAL	7	"ACP1,FAM110C,FAM150B,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.NH.A50V	2	21832	2764554	959	-0.6727	SMALL-LOSS	FOCAL	9	"ACP1,FAM110C,FAM150B,MYT1L,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AA.A010.01A	2	41541	672738	25	-0.853	SMALL-LOSS	FOCAL	5	"ACP1,FAM110C,FAM150B,SH3YL1,TMEM18"
TCGA.CK.5914.01A	2	41541	676075	27	-0.8314	SMALL-LOSS	FOCAL	5	"ACP1,FAM110C,FAM150B,SH3YL1,TMEM18"
TCGA.DM.A28H	2	101513	1676692	534	-0.6642	SMALL-LOSS	FOCAL	7	"ACP1,FAM150B,PXDN,SH3YL1,SNTG2,TMEM18,TPO"
TCGA.AG.4009.01A	2	264889	675483	10	-0.9741	SMALL-LOSS	FOCAL	3	"ACP1,FAM150B,TMEM18"
TCGA.AA.A00N.01A	2	287531	3504356	116	-0.6147	SMALL-LOSS	FOCAL	9	"ADI1,FAM150B,MYT1L,PXDN,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.CK.5914.01A	2	1687376	1892993	17	-0.9627	SMALL-LOSS	FOCAL	2	"MYT1L,PXDN"
TCGA.AG.3909.01A	2	1687376	1906830	15	-0.879	SMALL-LOSS	FOCAL	2	"MYT1L,PXDN"
TCGA.G4.6299	2	1788005	1802921	4	-0.5449	SMALL-LOSS	FOCAL	1	MYT1L
TCGA.DM.A28H	2	1835684	3814613	797	-0.6816	SMALL-LOSS	FOCAL	9	"ADI1,ALLC,COLEC11,DCDC2C,MYT1L,RNASEH1,RPS7,TRAPPC12,TSSC1"
TCGA.AA.3844	2	2285954	2381329	31	-0.5163	SMALL-LOSS	FOCAL	1	MYT1L
TCGA.AA.3850	2	2357644	2374378	10	-0.93125	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A50V	2	2774891	5176286	971	-0.7154	SMALL-LOSS	FOCAL	8	"ADI1,ALLC,COLEC11,DCDC2C,RNASEH1,RPS7,TRAPPC12,TSSC1"
TCGA.AA.3819	2	2796073	2797711	3	-1.1575	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	2962245	2970687	7	-0.5805	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00F.01A	2	3196143	3197718	2	-1.3184	SMALL-LOSS	FOCAL	1	TSSC1
TCGA.CK.5914.01A	2	3278053	7005988	87	-0.5588	SMALL-LOSS	FOCAL	10	"ADI1,ALLC,CMPK2,COLEC11,DCDC2C,RNASEH1,RPS7,SOX11,TRAPPC12,TSSC1"
TCGA.AG.3909.01A	2	3469321	3691317	26	-1.2819	SMALL-LOSS	FOCAL	5	"ADI1,COLEC11,RNASEH1,RPS7,TRAPPC12"
TCGA.AG.4009.01A	2	3623139	3673587	8	-1.0061	SMALL-LOSS	FOCAL	2	"COLEC11,RPS7"
TCGA.AA.A01Q.01A	2	3625236	3687808	8	-0.8296	SMALL-LOSS	FOCAL	2	"COLEC11,RPS7"
TCGA.AA.A00N.01A	2	3691004	5833266	24	-0.7542	SMALL-LOSS	FOCAL	4	"ALLC,COLEC11,DCDC2C,SOX11"
TCGA.AG.4009.01A	2	3743258	7030255	15	-0.7535	SMALL-LOSS	FOCAL	5	"ALLC,CMPK2,DCDC2C,RSAD2,SOX11"
TCGA.F4.6807	2	3997800	4094987	38	-0.7144	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6317	2	4150460	4154551	3	-1.1994	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28H	2	5291135	7087781	929	-0.718	SMALL-LOSS	FOCAL	4	"CMPK2,RNF144A,RSAD2,SOX11"
TCGA.DC.5337	2	5736506	5737816	4	-1.0176	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GC	2	6305428	6307849	4	-0.8235	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6883	2	7517230	8447978	391	-0.6762	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28H	2	7562721	10017619	948	-0.6773	SMALL-LOSS	FOCAL	10	"ADAM17,ASAP2,CPSF3,IAH1,ID2,ITGB1BP1,KIDINS220,MBOAT2,TAF1B,YWHAQ"
TCGA.AF.A56K	2	8289295	8290718	3	-0.776	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	2	9458637	9475204	6	-0.5186	SMALL-LOSS	FOCAL	1	ASAP2
TCGA.AG.3909.01A	2	9546912	9624549	28	-0.8223	SMALL-LOSS	FOCAL	3	"CPSF3,IAH1,ITGB1BP1"
TCGA.CK.5914.01A	2	9985301	9994401	6	-0.7048	SMALL-LOSS	FOCAL	1	TAF1B
TCGA.AG.4009.01A	2	10059749	10268933	26	-0.5276	SMALL-LOSS	FOCAL	5	"CYS1,GRHL1,KLF11,RRM2,TAF1B"
TCGA.AA.A00N.01A	2	10095040	10595287	46	-1.2426	SMALL-LOSS	FOCAL	7	"C2orf48,CYS1,GRHL1,HPCAL1,KLF11,ODC1,RRM2"
TCGA.CK.5914.01A	2	10186230	10595287	30	-0.7009	SMALL-LOSS	FOCAL	6	"C2orf48,CYS1,HPCAL1,KLF11,ODC1,RRM2"
TCGA.AA.A01Q.01A	2	10580803	10585018	7	-1.0879	SMALL-LOSS	FOCAL	1	ODC1
TCGA.AG.3909.01A	2	10580803	10585018	7	-1.185	SMALL-LOSS	FOCAL	1	ODC1
TCGA.AG.4009.01A	2	10580803	10585018	7	-0.8035	SMALL-LOSS	FOCAL	1	ODC1
TCGA.AA.A01Q.01A	2	10862924	10923246	11	-0.8317	SMALL-LOSS	FOCAL	1	ATP6V1C2
TCGA.AA.A00N.01A	2	10862924	11323468	40	-1.2113	SMALL-LOSS	FOCAL	6	"ATP6V1C2,C2orf50,KCNF1,PDIA6,PQLC3,ROCK2"
TCGA.AA.A010.01A	2	10927360	11335040	31	-0.9833	SMALL-LOSS	FOCAL	5	"C2orf50,KCNF1,PDIA6,PQLC3,ROCK2"
TCGA.AA.3850	2	11332407	11385833	12	-0.71775	SMALL-LOSS	FOCAL	1	ROCK2
TCGA.AA.A010.01A	2	11484071	11598364	9	-0.5284	SMALL-LOSS	FOCAL	2	"E2F6,ROCK2"
TCGA.AG.A01W.01A	2	11503977	11644897	17	-0.5331	SMALL-LOSS	FOCAL	1	E2F6
TCGA.AA.A00N.01A	2	11586525	14779242	78	-0.8201	SMALL-LOSS	FOCAL	7	"E2F6,FAM84A,GREB1,LOC653602,LPIN1,NTSR2,TRIB2"
TCGA.AA.A010.01A	2	11716450	11742481	15	-0.6524	SMALL-LOSS	FOCAL	1	GREB1
TCGA.AG.3909.01A	2	11728774	11928447	38	-0.9618	SMALL-LOSS	FOCAL	3	"GREB1,LPIN1,NTSR2"
TCGA.AG.4009.01A	2	11735326	11742481	6	-0.8247	SMALL-LOSS	FOCAL	1	GREB1
TCGA.AG.4009.01A	2	11798597	11913749	7	-0.6543	SMALL-LOSS	FOCAL	2	"LPIN1,NTSR2"
TCGA.AA.3982	2	12098726	12111958	9	-0.5198	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	2	12163224	12166875	6	-0.5191	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1HB	2	13089026	13093030	6	-0.982	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	13202305	14303638	323	-0.78525	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	14313159	14541456	93	-0.79965	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	14313159	14626897	127	-0.5205	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3680	2	14385294	14981293	216	-0.8471	SMALL-LOSS	FOCAL	2	"FAM84A,LOC653602"
TCGA.AA.A00D.01A	2	15307154	15644203	42	-0.6473	SMALL-LOSS	FOCAL	1	NBAS
TCGA.AA.A01S	2	15447901	15722502	66	-0.93685	SMALL-LOSS	FOCAL	1	NBAS
TCGA.AA.A00N.01A	2	15674618	15731989	10	-0.7886	SMALL-LOSS	FOCAL	2	"DDX1,NBAS"
TCGA.AG.3909.01A	2	15674618	15767127	27	-0.8813	SMALL-LOSS	FOCAL	2	"DDX1,NBAS"
TCGA.AG.A023.01A	2	15735243	15760305	15	-0.7113	SMALL-LOSS	FOCAL	1	DDX1
TCGA.CK.5914.01A	2	15735243	15767127	18	-1.1796	SMALL-LOSS	FOCAL	1	DDX1
TCGA.AA.A010.01A	2	15735243	15770853	22	-0.9924	SMALL-LOSS	FOCAL	1	DDX1
TCGA.AG.4009.01A	2	15744511	15760305	7	-0.8518	SMALL-LOSS	FOCAL	1	DDX1
TCGA.AA.A00N.01A	2	15767127	15841305	7	-1.1614	SMALL-LOSS	FOCAL	1	DDX1
TCGA.AA.A00D.01A	2	15770853	17860076	20	-0.5643	SMALL-LOSS	FOCAL	6	"DDX1,FAM49A,MYCN,RAD51AP2,SMC6,VSNL1"
TCGA.AA.A010.01A	2	15840493	16742666	11	-0.5909	SMALL-LOSS	FOCAL	2	"FAM49A,MYCN"
TCGA.DM.A28H	2	16940796	18533457	612	-0.6827	SMALL-LOSS	FOCAL	6	"GEN1,KCNS3,MSGN1,RAD51AP2,SMC6,VSNL1"
TCGA.AA.A01S	2	17538495	17958761	102	-1.06975	SMALL-LOSS	FOCAL	4	"GEN1,RAD51AP2,SMC6,VSNL1"
TCGA.AG.3591	2	17674792	17675958	3	-1.1092	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	17846714	17919441	24	-0.6228	SMALL-LOSS	FOCAL	1	SMC6
TCGA.AA.A00D.01A	2	17864868	17912956	19	-0.9192	SMALL-LOSS	FOCAL	1	SMC6
TCGA.AA.A01C.01A	2	17912274	17942616	7	-0.6523	SMALL-LOSS	FOCAL	2	"GEN1,SMC6"
TCGA.AA.A00N.01A	2	17919441	17954280	11	-0.9844	SMALL-LOSS	FOCAL	2	"GEN1,SMC6"
TCGA.AG.3909.01A	2	17922837	17946116	5	-0.6735	SMALL-LOSS	FOCAL	2	"GEN1,SMC6"
TCGA.AG.3890	2	18372654	19732049	558	-0.6087	SMALL-LOSS	FOCAL	4	"NT5C1B,NT5C1B-RDH14,OSR1,RDH14"
TCGA.AA.A01Z	2	18376911	18559973	94	-0.842	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	2	18468567	18485677	12	-1.283	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	2	18736430	20100740	16	-0.7144	SMALL-LOSS	FOCAL	5	"NT5C1B,NT5C1B-RDH14,OSR1,RDH14,TTC32"
TCGA.AG.3611.01A	2	18745065	18768172	8	-0.5602	SMALL-LOSS	FOCAL	2	"NT5C1B,NT5C1B-RDH14"
TCGA.AG.4009.01A	2	18745065	18770621	10	-0.8674	SMALL-LOSS	FOCAL	2	"NT5C1B,NT5C1B-RDH14"
TCGA.AA.A00L.01A	2	18758012	18770621	8	-1.1995	SMALL-LOSS	FOCAL	2	"NT5C1B,NT5C1B-RDH14"
TCGA.AY.5543	2	18803871	18882042	21	-0.5783	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	19841369	19844138	4	-1.15995	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	20111829	20137863	6	-0.74715	SMALL-LOSS	FOCAL	1	WDR35
TCGA.AG.3909.01A	2	20173276	20189664	8	-0.5493	SMALL-LOSS	FOCAL	1	WDR35
TCGA.AA.A00N.01A	2	20173276	20460049	33	-1.093	SMALL-LOSS	FOCAL	5	"LAPTM4A,MATN3,PUM2,SDC1,WDR35"
TCGA.AG.3909.01A	2	20192799	20205465	7	-1.1886	SMALL-LOSS	FOCAL	1	MATN3
TCGA.DM.A28H	2	20197850	20654948	167	-0.6045	SMALL-LOSS	FOCAL	5	"LAPTM4A,MATN3,PUM2,RHOB,SDC1"
TCGA.DM.A28H	2	20760364	20981253	87	-0.5949	SMALL-LOSS	FOCAL	3	"GDF7,HS1BP3,LDAH"
TCGA.AG.3890	2	20817492	20817811	4	-1.2807	SMALL-LOSS	FOCAL	1	HS1BP3
TCGA.AA.A01Q.01A	2	20818709	20886626	8	-0.5756	SMALL-LOSS	FOCAL	3	"GDF7,HS1BP3,LDAH"
TCGA.AA.3941	2	21058064	21061933	7	-1.0195	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	21229002	21233971	6	-0.8638	SMALL-LOSS	FOCAL	1	APOB
TCGA.AA.A010.01A	2	21242544	21255217	10	-0.8372	SMALL-LOSS	FOCAL	1	APOB
TCGA.AA.3850	2	21674320	22847621	302	-0.79945	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	21676619	23220918	412	-0.5515	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3680	2	21860216	22314595	95	-0.7382	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1HB	2	22897714	22903485	3	-1.0245	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	23315191	23324199	5	-0.7706	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2678	2	23527693	23583833	30	-0.662	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3967.01A	2	23919166	24080252	17	-0.6367	SMALL-LOSS	FOCAL	2	"ATAD2B,KLHL29"
TCGA.AA.3982	2	23958163	23978799	4	-0.6592	SMALL-LOSS	FOCAL	1	ATAD2B
TCGA.AA.3941	2	23972845	23984746	4	-0.7544	SMALL-LOSS	FOCAL	1	ATAD2B
TCGA.AA.A00N.01A	2	24181105	24239038	8	-0.5558	SMALL-LOSS	FOCAL	2	"MFSD2B,UBXN2A"
TCGA.AA.A00N.01A	2	24253772	24406101	36	-1.3131	SMALL-LOSS	FOCAL	7	"C2orf44,FAM228A,FAM228B,FKBP1B,PFN4,SF3B6,TP53I3"
TCGA.AG.3909.01A	2	24260635	24406101	20	-1.1996	SMALL-LOSS	FOCAL	7	"C2orf44,FAM228A,FAM228B,FKBP1B,PFN4,SF3B6,TP53I3"
TCGA.AG.4009.01A	2	24338381	24413233	8	-0.7045	SMALL-LOSS	FOCAL	3	"FAM228A,FAM228B,PFN4"
TCGA.AG.3909.01A	2	25013279	25606641	61	-0.5484	SMALL-LOSS	FOCAL	8	"ADCY3,CENPO,DNAJC27,DNMT3A,DTNB,EFR3B,POMC,PTRHD1"
TCGA.AA.A01Q.01A	2	25457101	25536716	23	-0.8427	SMALL-LOSS	FOCAL	1	DNMT3A
TCGA.AA.A00N.01A	2	26349991	26410088	9	-0.6481	SMALL-LOSS	FOCAL	2	"GAREML,RAB10"
TCGA.AA.A00N.01A	2	26414091	26426889	8	-1.2983	SMALL-LOSS	FOCAL	1	HADHA
TCGA.AA.A010.01A	2	26587114	26611825	9	-0.9431	SMALL-LOSS	FOCAL	1	EPT1
TCGA.AG.3909.01A	2	26587114	26611825	9	-0.9961	SMALL-LOSS	FOCAL	1	EPT1
TCGA.CK.5914.01A	2	26587114	26611825	9	-0.7887	SMALL-LOSS	FOCAL	1	EPT1
TCGA.AG.3891.01A	2	26697354	26707303	6	-0.6327	SMALL-LOSS	FOCAL	1	OTOF
TCGA.AG.3909.01A	2	26997058	27016005	8	-1.107	SMALL-LOSS	FOCAL	2	"CENPA,SLC35F6"
TCGA.AG.3909.01A	2	27167472	27292908	37	-1.2361	SMALL-LOSS	FOCAL	4	"AGBL5,DPYSL5,MAPRE3,TMEM214"
TCGA.AA.A010.01A	2	27275846	27315151	24	-0.8294	SMALL-LOSS	FOCAL	4	"AGBL5,EMILIN1,KHK,OST4"
TCGA.AG.4009.01A	2	27275846	27351288	32	-0.7924	SMALL-LOSS	FOCAL	6	"ABHD1,AGBL5,CGREF1,EMILIN1,KHK,OST4"
TCGA.AA.A01Q.01A	2	27275846	27356348	44	-0.6631	SMALL-LOSS	FOCAL	7	"ABHD1,AGBL5,CGREF1,EMILIN1,KHK,OST4,PREB"
TCGA.AG.3909.01A	2	27351288	27355965	10	-1.1255	SMALL-LOSS	FOCAL	2	"ABHD1,PREB"
TCGA.AA.A010.01A	2	27354513	27356348	5	-1.1696	SMALL-LOSS	FOCAL	1	PREB
TCGA.AG.A01W.01A	2	27413568	27419649	5	-0.7216	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	2	27429680	27446748	13	-0.8902	SMALL-LOSS	FOCAL	3	"ATRAID,CAD,SLC5A6"
TCGA.AA.A00N.01A	2	27440370	27455872	18	-0.8824	SMALL-LOSS	FOCAL	1	CAD
TCGA.CK.5914.01A	2	27499558	27502965	4	-0.8675	SMALL-LOSS	FOCAL	1	DNAJC5G
TCGA.AA.A00N.01A	2	27499558	27556485	28	-0.6702	SMALL-LOSS	FOCAL	5	"DNAJC5G,GTF3C2,MPV17,TRIM54,UCN"
TCGA.AF.3914.01A	2	27565655	27677185	60	-0.6788	SMALL-LOSS	FOCAL	8	"EIF2B4,GTF3C2,IFT172,KRTCAP3,NRBP1,PPM1G,SNX17,ZNF513"
TCGA.AG.4009.01A	2	27587218	27606185	27	-1.0905	SMALL-LOSS	FOCAL	4	"EIF2B4,PPM1G,SNX17,ZNF513"
TCGA.AG.3909.01A	2	27587218	27667840	47	-1.1587	SMALL-LOSS	FOCAL	7	"EIF2B4,IFT172,KRTCAP3,NRBP1,PPM1G,SNX17,ZNF513"
TCGA.CK.5914.01A	2	27587218	27672815	57	-0.6715	SMALL-LOSS	FOCAL	7	"EIF2B4,IFT172,KRTCAP3,NRBP1,PPM1G,SNX17,ZNF513"
TCGA.AG.4009.01A	2	27606768	27670334	24	-0.7591	SMALL-LOSS	FOCAL	4	"IFT172,KRTCAP3,NRBP1,PPM1G"
TCGA.AA.A010.01A	2	27664371	27693766	28	-0.8317	SMALL-LOSS	FOCAL	3	"IFT172,KRTCAP3,NRBP1"
TCGA.AG.3909.01A	2	27668146	27672815	6	-0.5497	SMALL-LOSS	FOCAL	2	"IFT172,KRTCAP3"
TCGA.AA.A00N.01A	2	27706113	27726329	20	-1.1195	SMALL-LOSS	FOCAL	3	"FNDC4,GCKR,IFT172"
TCGA.AF.3914.01A	2	27706681	27708200	4	-0.5424	SMALL-LOSS	FOCAL	1	IFT172
TCGA.AG.4009.01A	2	27708200	27723953	12	-0.7415	SMALL-LOSS	FOCAL	3	"FNDC4,GCKR,IFT172"
TCGA.AA.A00N.01A	2	27760266	27837986	19	-1.1596	SMALL-LOSS	FOCAL	2	"C2orf16,ZNF512"
TCGA.AA.A010.01A	2	27799408	27800568	2	-0.9782	SMALL-LOSS	FOCAL	1	C2orf16
TCGA.AG.3909.01A	2	27799408	27805898	4	-0.628	SMALL-LOSS	FOCAL	2	"C2orf16,ZNF512"
TCGA.AG.3909.01A	2	27806457	27825956	8	-1.0059	SMALL-LOSS	FOCAL	1	ZNF512
TCGA.AA.A00D.01A	2	27849778	27862855	11	-0.8369	SMALL-LOSS	FOCAL	2	"CCDC121,GPN1"
TCGA.AA.A010.01A	2	27905066	27930418	7	-1.2883	SMALL-LOSS	FOCAL	1	SLC4A1AP
TCGA.CK.5914.01A	2	27995504	28005392	5	-0.7526	SMALL-LOSS	FOCAL	2	"MRPL33,RBKS"
TCGA.AA.A00D.01A	2	28050387	28521187	17	-0.5763	SMALL-LOSS	FOCAL	2	"BRE,RBKS"
TCGA.AA.3941	2	28305662	28320180	5	-1.156	SMALL-LOSS	FOCAL	1	BRE
TCGA.AY.A71X	2	28597623	28599764	3	-0.9883	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	2	28690339	28701354	7	-0.684	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	2	28718942	28865683	57	-0.7078	SMALL-LOSS	FOCAL	1	PLB1
TCGA.AA.A00N.01A	2	28974917	29135408	25	-0.5645	SMALL-LOSS	FOCAL	4	"PPP1CB,SPDYA,TRMT61B,WDR43"
TCGA.5M.AATE	2	29280760	29285253	5	-0.5346	SMALL-LOSS	FOCAL	1	C2orf71
TCGA.AG.A036.01A	2	29297036	29460061	18	-1.2024	SMALL-LOSS	FOCAL	3	"ALK,C2orf71,CLIP4"
TCGA.AA.A00N.01A	2	29344218	29379177	10	-0.9592	SMALL-LOSS	FOCAL	1	CLIP4
TCGA.AA.A00N.01A	2	30142807	30457234	6	-0.7617	SMALL-LOSS	FOCAL	3	"ALK,LBH,YPEL5"
TCGA.AD.6899	2	30623061	30627423	5	-1.0148	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	2	31262731	31269455	7	-0.8513	SMALL-LOSS	FOCAL	1	GALNT14
TCGA.AG.A01W.01A	2	32205482	32225721	8	-0.612	SMALL-LOSS	FOCAL	1	MEMO1
TCGA.AA.A00N.01A	2	32248445	32254621	3	-1.1448	SMALL-LOSS	FOCAL	1	DPY30
TCGA.CK.5914.01A	2	32248445	32264283	4	-0.6684	SMALL-LOSS	FOCAL	1	DPY30
TCGA.AG.4009.01A	2	32515500	32530541	5	-0.8905	SMALL-LOSS	FOCAL	1	YIPF4
TCGA.CK.5914.01A	2	32515500	32532110	6	-1.0778	SMALL-LOSS	FOCAL	1	YIPF4
TCGA.AA.A00N.01A	2	32658675	32664534	4	-0.939	SMALL-LOSS	FOCAL	1	BIRC6
TCGA.AG.4009.01A	2	32661112	32693458	14	-0.777	SMALL-LOSS	FOCAL	1	BIRC6
TCGA.CK.5914.01A	2	32664534	32678829	7	-0.772	SMALL-LOSS	FOCAL	1	BIRC6
TCGA.A6.2681	2	33392082	33817558	181	-0.845	SMALL-LOSS	FOCAL	3	"FAM98A,LTBP1,RASGRP3"
TCGA.DM.A28H	2	33733553	36590530	1180	-0.6246	SMALL-LOSS	FOCAL	3	"CRIM1,FAM98A,RASGRP3"
TCGA.AA.3941	2	34056837	34060979	8	-0.9375	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	34394704	36514984	818	-0.62325	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3556	2	34429223	34437248	3	-1.1333	SMALL-LOSS	FOCAL	0	None
TCGA.T9.A92H	2	35051644	35074154	10	-0.5805	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3890	2	35237369	35289776	19	-0.7919	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	2	35247915	35573876	86	-1.111	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	36491003	36495029	5	-0.94	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	36612203	36614614	13	-0.84505	SMALL-LOSS	FOCAL	1	CRIM1
TCGA.AA.3982	2	36628601	36652815	11	-0.6799	SMALL-LOSS	FOCAL	1	CRIM1
TCGA.DM.A28H	2	36904327	36905012	3	-1.0288	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	2	37069319	37088870	8	-0.9164	SMALL-LOSS	FOCAL	1	STRN
TCGA.A6.3808.01A	2	37152206	37406573	63	-1.1542	SMALL-LOSS	FOCAL	5	"EIF2AK2,GPATCH11,HEATR5B,STRN,SULT6B1"
TCGA.AG.A01W.01A	2	37216062	37267966	13	-0.5948	SMALL-LOSS	FOCAL	1	HEATR5B
TCGA.AA.A00N.01A	2	37362557	37415531	15	-1.0744	SMALL-LOSS	FOCAL	2	"EIF2AK2,SULT6B1"
TCGA.A6.6653	2	37365639	37417353	18	-0.5271	SMALL-LOSS	FOCAL	2	"EIF2AK2,SULT6B1"
TCGA.AA.A00N.01A	2	37438082	37449476	9	-0.7673	SMALL-LOSS	FOCAL	1	CEBPZ
TCGA.AA.A010.01A	2	37543388	38231064	21	-0.8948	SMALL-LOSS	FOCAL	4	"CDC42EP3,PRKD3,QPCT,RMDN2"
TCGA.AA.3982	2	38145249	38177524	9	-0.7674	SMALL-LOSS	FOCAL	1	RMDN2
TCGA.CK.5914.01A	2	38156383	38297844	16	-0.6199	SMALL-LOSS	FOCAL	2	"CYP1B1,RMDN2"
TCGA.AG.3909.01A	2	38177580	38297844	12	-1.1982	SMALL-LOSS	FOCAL	2	"CYP1B1,RMDN2"
TCGA.AA.3941	2	38799819	38807440	8	-0.8563	SMALL-LOSS	FOCAL	1	HNRNPLL
TCGA.AA.3982	2	38799819	38807440	8	-1.2385	SMALL-LOSS	FOCAL	1	HNRNPLL
TCGA.AA.A010.01A	2	38925424	38978303	15	-0.6911	SMALL-LOSS	FOCAL	2	"GALM,SRSF7"
TCGA.AG.4009.01A	2	38958858	38978303	11	-0.7973	SMALL-LOSS	FOCAL	2	"GALM,SRSF7"
TCGA.CK.5914.01A	2	38968188	38977129	10	-0.7236	SMALL-LOSS	FOCAL	1	SRSF7
TCGA.AA.A01Q.01A	2	38972211	38977129	7	-0.605	SMALL-LOSS	FOCAL	1	SRSF7
TCGA.AG.3909.01A	2	38972211	38978303	9	-0.9732	SMALL-LOSS	FOCAL	1	SRSF7
TCGA.AA.A00N.01A	2	39171005	39216334	14	-1.0037	SMALL-LOSS	FOCAL	2	"ARHGEF33,SOS1"
TCGA.AA.A00N.01A	2	39456469	39492293	7	-1.1505	SMALL-LOSS	FOCAL	2	"CDKL4,MAP4K3"
TCGA.DM.A28H	2	39766613	41963380	993	-0.637	SMALL-LOSS	FOCAL	3	"SLC8A1,THUMPD2,TMEM178A"
TCGA.AA.3850	2	39888709	39930295	15	-0.56925	SMALL-LOSS	FOCAL	1	TMEM178A
TCGA.AA.A00N.01A	2	39988428	39998605	6	-0.8703	SMALL-LOSS	FOCAL	1	THUMPD2
TCGA.CK.5914.01A	2	39988428	39998605	6	-0.5234	SMALL-LOSS	FOCAL	1	THUMPD2
TCGA.AA.3941	2	40105811	40141609	26	-1.2924	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	40111772	40131376	19	-0.82835	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	40321188	40338274	13	-1.2312	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	40365413	40375248	8	-0.6256	SMALL-LOSS	FOCAL	1	SLC8A1
TCGA.AA.3941	2	40387387	40392312	6	-1.0588	SMALL-LOSS	FOCAL	1	SLC8A1
TCGA.AA.3850	2	40630677	41715316	404	-1.03835	SMALL-LOSS	FOCAL	1	SLC8A1
TCGA.AA.3941	2	40693480	40990661	107	-1.0606	SMALL-LOSS	FOCAL	1	SLC8A1
TCGA.AA.3982	2	40742900	40987686	93	-0.7527	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	2	41629000	41709819	37	-0.52	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	41633071	41710556	37	-0.7473	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	41930144	41939871	9	-1.0081	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	2	42275302	42284695	7	-0.6434	SMALL-LOSS	FOCAL	1	PKDCC
TCGA.AG.4009.01A	2	42280362	42284695	6	-0.9361	SMALL-LOSS	FOCAL	1	PKDCC
TCGA.AA.3982	2	42468698	42479049	5	-0.6747	SMALL-LOSS	FOCAL	1	EML4
TCGA.AA.3952	2	42594645	43111943	139	-0.5327	SMALL-LOSS	FOCAL	4	"HAAO,KCNG3,MTA3,OXER1"
TCGA.F4.6461	2	42768063	44000434	446	-0.5644	SMALL-LOSS	FOCAL	7	"C1GALT1C1L,HAAO,MTA3,OXER1,PLEKHH2,THADA,ZFP36L2"
TCGA.AG.3898	2	42870974	44107700	470	-0.5367	SMALL-LOSS	FOCAL	10	"ABCG5,ABCG8,C1GALT1C1L,DYNC2LI1,HAAO,MTA3,OXER1,PLEKHH2,THADA,ZFP36L2"
TCGA.AA.A00N.01A	2	43009923	43547536	17	-0.7718	SMALL-LOSS	FOCAL	3	"HAAO,THADA,ZFP36L2"
TCGA.D5.6932	2	43421748	43845408	130	-0.8252	SMALL-LOSS	FOCAL	2	"THADA,ZFP36L2"
TCGA.AA.3850	2	43860877	43873504	7	-0.53105	SMALL-LOSS	FOCAL	1	PLEKHH2
TCGA.AA.A00N.01A	2	43871791	43924263	7	-1.2295	SMALL-LOSS	FOCAL	2	"C1GALT1C1L,PLEKHH2"
TCGA.AG.4009.01A	2	43902487	43922236	5	-0.8739	SMALL-LOSS	FOCAL	2	"C1GALT1C1L,PLEKHH2"
TCGA.AA.3850	2	44027390	44030031	4	-1.19645	SMALL-LOSS	FOCAL	1	DYNC2LI1
TCGA.AA.A00N.01A	2	44187630	44209335	10	-0.5445	SMALL-LOSS	FOCAL	1	LRPPRC
TCGA.F4.6461	2	44261891	45839699	619	-0.5348	SMALL-LOSS	FOCAL	7	"CAMKMT,PPM1B,PREPL,SIX2,SIX3,SLC3A1,SRBD1"
TCGA.AG.3909.01A	2	44569527	44586599	5	-0.5171	SMALL-LOSS	FOCAL	1	PREPL
TCGA.AA.A01Q.01A	2	44993522	45235663	4	-0.6113	SMALL-LOSS	FOCAL	3	"CAMKMT,SIX2,SIX3"
TCGA.AG.3909.01A	2	44993522	45235663	4	-0.9681	SMALL-LOSS	FOCAL	3	"CAMKMT,SIX2,SIX3"
TCGA.AA.3844	2	45218062	45223508	6	-0.6388	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	45220347	45221376	3	-1.09835	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	45333981	45336508	5	-0.85825	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	45392073	45405159	3	-0.93365	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	45616997	45711551	31	-1.17035	SMALL-LOSS	FOCAL	1	SRBD1
TCGA.AA.3941	2	45854863	45857350	3	-0.994	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	46436089	46454211	12	-0.5225	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	46436089	46454927	13	-0.59145	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	2	46839330	46846693	6	-0.5545	SMALL-LOSS	FOCAL	2	"CRIPT,PIGF"
TCGA.AG.3909.01A	2	46839330	46851253	7	-0.8504	SMALL-LOSS	FOCAL	2	"CRIPT,PIGF"
TCGA.AA.A010.01A	2	47132560	47185562	8	-1.0962	SMALL-LOSS	FOCAL	2	"MCFD2,TTC7A"
TCGA.AA.A00D.01A	2	47221456	47600585	26	-0.5449	SMALL-LOSS	FOCAL	4	"C2orf61,CALM2,EPCAM,TTC7A"
TCGA.AA.A00N.01A	2	47314097	47672680	33	-1.214	SMALL-LOSS	FOCAL	4	"C2orf61,CALM2,EPCAM,MSH2"
TCGA.AG.3909.01A	2	47378346	47656844	23	-0.8828	SMALL-LOSS	FOCAL	4	"C2orf61,CALM2,EPCAM,MSH2"
TCGA.AH.6897	2	47381096	47381407	3	-0.6364	SMALL-LOSS	FOCAL	1	C2orf61
TCGA.AA.3509.01A	2	47600585	47656844	16	-0.8553	SMALL-LOSS	FOCAL	2	"EPCAM,MSH2"
TCGA.AA.A010.01A	2	47739405	48040892	22	-1.1616	SMALL-LOSS	FOCAL	3	"FBXO11,KCNK12,MSH6"
TCGA.AA.A00N.01A	2	48016481	48033303	11	-0.8593	SMALL-LOSS	FOCAL	1	MSH6
TCGA.AA.3952	2	48659677	48962290	92	-0.5469	SMALL-LOSS	FOCAL	5	"GTF2A1L,LHCGR,PPP1R21,STON1,STON1-GTF2A1L"
TCGA.AG.A016.01A	2	48681658	48688270	4	-0.6923	SMALL-LOSS	FOCAL	1	PPP1R21
TCGA.AA.A00D.01A	2	48869482	50573792	32	-0.6839	SMALL-LOSS	FOCAL	5	"FSHR,GTF2A1L,LHCGR,NRXN1,STON1-GTF2A1L"
TCGA.AA.3941	2	48920262	48923534	5	-1.1942	SMALL-LOSS	FOCAL	2	"LHCGR,STON1-GTF2A1L"
TCGA.AA.3982	2	49201611	53664317	1720	-0.5328	SMALL-LOSS	FOCAL	2	"FSHR,NRXN1"
TCGA.AA.3941	2	49202584	53030948	1413	-0.6519	SMALL-LOSS	FOCAL	2	"FSHR,NRXN1"
TCGA.AA.3850	2	49205109	49222871	14	-0.68185	SMALL-LOSS	FOCAL	1	FSHR
TCGA.AA.3844	2	49292340	53664317	1666	-0.5872	SMALL-LOSS	FOCAL	2	"FSHR,NRXN1"
TCGA.AA.3850	2	49333223	49357673	16	-0.58485	SMALL-LOSS	FOCAL	1	FSHR
TCGA.AA.3850	2	49366046	51492866	773	-0.81415	SMALL-LOSS	FOCAL	2	"FSHR,NRXN1"
TCGA.AG.A016.01A	2	50722991	50733593	3	-0.9381	SMALL-LOSS	FOCAL	1	NRXN1
TCGA.AA.3850	2	51525391	53139761	600	-0.87075	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	53051797	53664317	296	-0.7003	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	53146747	53647728	231	-0.87645	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	54036334	54126971	26	-0.6062	SMALL-LOSS	FOCAL	4	"ERLEC1,GPR75,GPR75-ASB3,PSME4"
TCGA.AG.4009.01A	2	54080269	54096461	5	-0.8693	SMALL-LOSS	FOCAL	3	"GPR75,GPR75-ASB3,PSME4"
TCGA.AA.A010.01A	2	54161693	54167015	5	-0.6831	SMALL-LOSS	FOCAL	1	PSME4
TCGA.AZ.6599	2	54268749	55121929	384	-0.8525	SMALL-LOSS	FOCAL	5	"ACYP2,C2orf73,EML6,SPTBN1,TSPYL6"
TCGA.A6.2681	2	54352357	54523284	75	-0.8217	SMALL-LOSS	FOCAL	2	"ACYP2,TSPYL6"
TCGA.AA.3982	2	54654252	54654845	2	-0.9017	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	2	55029464	55043112	8	-0.9578	SMALL-LOSS	FOCAL	1	EML6
TCGA.D5.6533	2	55081375	55218790	86	-0.7015	SMALL-LOSS	FOCAL	2	"EML6,RTN4"
TCGA.AA.3850	2	55119919	55124411	5	-0.85875	SMALL-LOSS	FOCAL	1	EML6
TCGA.AA.3850	2	55231828	55254164	6	-0.97665	SMALL-LOSS	FOCAL	1	RTN4
TCGA.AA.A00N.01A	2	55433359	55467105	14	-1.1079	SMALL-LOSS	FOCAL	3	"CLHC1,MTIF2,RPS27A"
TCGA.AG.3909.01A	2	55439761	55464375	10	-0.7663	SMALL-LOSS	FOCAL	3	"CLHC1,MTIF2,RPS27A"
TCGA.CK.5914.01A	2	55439761	55464375	10	-0.5801	SMALL-LOSS	FOCAL	3	"CLHC1,MTIF2,RPS27A"
TCGA.AA.A00D.01A	2	55539531	55589397	17	-1.1124	SMALL-LOSS	FOCAL	1	CCDC88A
TCGA.AA.A00A.01A	2	55545962	55589397	13	-0.8605	SMALL-LOSS	FOCAL	1	CCDC88A
TCGA.AA.3509.01A	2	55815964	55914714	28	-0.6022	SMALL-LOSS	FOCAL	2	"PNPT1,SMEK2"
TCGA.AZ.4684.01A	2	55815964	55914714	28	-0.5859	SMALL-LOSS	FOCAL	2	"PNPT1,SMEK2"
TCGA.AG.3909.01A	2	55863365	55883213	10	-0.9523	SMALL-LOSS	FOCAL	1	PNPT1
TCGA.AG.4009.01A	2	55863365	55920751	24	-0.6662	SMALL-LOSS	FOCAL	1	PNPT1
TCGA.CK.5914.01A	2	55864614	55883213	9	-0.8668	SMALL-LOSS	FOCAL	1	PNPT1
TCGA.AA.A00N.01A	2	55889030	55914714	12	-0.6912	SMALL-LOSS	FOCAL	1	PNPT1
TCGA.AA.3850	2	56095993	56108332	9	-1.21755	SMALL-LOSS	FOCAL	1	EFEMP1
TCGA.AA.3850	2	56394878	60081377	1211	-0.70555	SMALL-LOSS	FOCAL	3	"CCDC85A,FANCL,VRK2"
TCGA.AA.3941	2	56970731	60093477	973	-0.5167	SMALL-LOSS	FOCAL	2	"FANCL,VRK2"
TCGA.AA.3866	2	57280010	57298297	5	-1.0181	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	58453845	60780322	13	-0.9448	SMALL-LOSS	FOCAL	2	"BCL11A,FANCL"
TCGA.EI.6511	2	58842929	58887038	16	-0.5683	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6154	2	61032831	61618659	98	-0.7129	SMALL-LOSS	FOCAL	7	"AHSA2,C2orf74,KIAA1841,PEX13,PUS10,REL,USP34"
TCGA.AA.A010.01A	2	61108884	61148851	9	-0.9233	SMALL-LOSS	FOCAL	1	REL
TCGA.AA.A010.01A	2	61297438	61319557	8	-0.781	SMALL-LOSS	FOCAL	1	KIAA1841
TCGA.AA.A00N.01A	2	61389578	61417384	10	-1.3014	SMALL-LOSS	FOCAL	3	"AHSA2,C2orf74,USP34"
TCGA.AA.A010.01A	2	61430226	61447398	8	-0.5721	SMALL-LOSS	FOCAL	1	USP34
TCGA.A6.3808.01A	2	61507332	63223741	102	-0.8059	SMALL-LOSS	FOCAL	8	"B3GNT2,CCT4,COMMD1,EHBP1,FAM161A,TMEM17,USP34,XPO1"
TCGA.AA.3509.01A	2	61575839	62362935	59	-0.5277	SMALL-LOSS	FOCAL	5	"CCT4,COMMD1,FAM161A,USP34,XPO1"
TCGA.AA.A00N.01A	2	61705928	62934298	53	-0.9007	SMALL-LOSS	FOCAL	7	"B3GNT2,CCT4,COMMD1,EHBP1,FAM161A,TMEM17,XPO1"
TCGA.AA.A010.01A	2	61723964	61749696	6	-0.9567	SMALL-LOSS	FOCAL	1	XPO1
TCGA.AG.3909.01A	2	62069235	62112080	14	-0.8735	SMALL-LOSS	FOCAL	2	"CCT4,FAM161A"
TCGA.AG.4021	2	63089433	63512205	36	-0.6309	SMALL-LOSS	FOCAL	3	"EHBP1,OTX1,WDPCP"
TCGA.AA.A00N.01A	2	63264620	63282609	7	-0.8556	SMALL-LOSS	FOCAL	2	"EHBP1,OTX1"
TCGA.AG.3909.01A	2	63264620	63282609	7	-1.0289	SMALL-LOSS	FOCAL	2	"EHBP1,OTX1"
TCGA.AG.4009.01A	2	63264620	63282609	7	-0.8429	SMALL-LOSS	FOCAL	2	"EHBP1,OTX1"
TCGA.D5.6537	2	63298149	63361501	7	-0.8253	SMALL-LOSS	FOCAL	1	WDPCP
TCGA.DM.A28F	2	63473442	63529860	18	-0.9096	SMALL-LOSS	FOCAL	1	WDPCP
TCGA.AG.3909.01A	2	63833944	64084916	4	-0.6667	SMALL-LOSS	FOCAL	2	"MDH1,UGP2"
TCGA.AG.3898	2	64145778	65006550	297	-0.563	SMALL-LOSS	FOCAL	5	"AFTPH,LGALSL,PELI1,SERTAD2,VPS54"
TCGA.AA.A00D.01A	2	64146970	64327504	17	-0.8014	SMALL-LOSS	FOCAL	2	"PELI1,VPS54"
TCGA.A6.2681	2	64320745	64543087	82	-0.7808	SMALL-LOSS	FOCAL	1	PELI1
TCGA.AG.4009.01A	2	64682432	64685382	3	-0.8585	SMALL-LOSS	FOCAL	1	LGALSL
TCGA.CK.5914.01A	2	64682432	64779161	5	-0.8224	SMALL-LOSS	FOCAL	2	"AFTPH,LGALSL"
TCGA.AA.A010.01A	2	64682432	65237679	18	-1.2352	SMALL-LOSS	FOCAL	4	"AFTPH,LGALSL,SERTAD2,SLC1A4"
TCGA.AZ.6608	2	65369963	68486685	1240	-0.5835	SMALL-LOSS	FOCAL	8	"ACTR2,C1D,ETAA1,MEIS1,PNO1,PPP3R1,SPRED2,WDR92"
TCGA.AG.3909.01A	2	65543817	66669987	11	-1.1748	SMALL-LOSS	FOCAL	2	"MEIS1,SPRED2"
TCGA.AA.A00N.01A	2	65543817	67637021	29	-0.8991	SMALL-LOSS	FOCAL	3	"ETAA1,MEIS1,SPRED2"
TCGA.AG.4009.01A	2	65559057	66666924	7	-0.7366	SMALL-LOSS	FOCAL	2	"MEIS1,SPRED2"
TCGA.AA.3941	2	65718011	65718173	3	-0.7453	SMALL-LOSS	FOCAL	0	None
TCGA.F5.6864	2	66094225	67100776	370	-0.5591	SMALL-LOSS	FOCAL	1	MEIS1
TCGA.AZ.4614	2	66402410	66513286	39	-0.8289	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	2	66662908	66669987	6	-0.9722	SMALL-LOSS	FOCAL	1	MEIS1
TCGA.D5.6537	2	67158315	67173900	3	-0.9809	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	2	67348996	67349710	5	-1.1901	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	2	67629813	67642020	6	-0.9308	SMALL-LOSS	FOCAL	1	ETAA1
TCGA.A6.6653	2	68088398	68151618	23	-0.5321	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	2	68228063	68243174	7	-0.5198	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	68691304	68772277	11	-1.0678	SMALL-LOSS	FOCAL	2	"APLF,FBXO48"
TCGA.AG.3909.01A	2	68691304	68772277	9	-0.6142	SMALL-LOSS	FOCAL	2	"APLF,FBXO48"
TCGA.AA.3844	2	69227044	69252125	11	-0.8536	SMALL-LOSS	FOCAL	1	ANTXR1
TCGA.AA.3844	2	69355870	69365797	7	-0.5953	SMALL-LOSS	FOCAL	1	ANTXR1
TCGA.AA.A00N.01A	2	69623299	69658986	7	-1.0416	SMALL-LOSS	FOCAL	1	NFU1
TCGA.AA.A00N.01A	2	70039757	70071205	12	-1.0273	SMALL-LOSS	FOCAL	2	"ANXA4,GMCL1"
TCGA.AA.A00O.01A	2	70043179	70068027	8	-0.5355	SMALL-LOSS	FOCAL	2	"ANXA4,GMCL1"
TCGA.AA.3982	2	70063526	70063772	4	-1.0481	SMALL-LOSS	FOCAL	1	GMCL1
TCGA.AA.3844	2	70063659	70063772	3	-1.1147	SMALL-LOSS	FOCAL	1	GMCL1
TCGA.AA.A00N.01A	2	70124452	70406615	18	-0.8677	SMALL-LOSS	FOCAL	5	"ASPRV1,C2orf42,MXD1,PCBP1,SNRNP27"
TCGA.AG.3909.01A	2	70130244	70377498	10	-0.8038	SMALL-LOSS	FOCAL	5	"ASPRV1,C2orf42,MXD1,PCBP1,SNRNP27"
TCGA.A6.2678	2	70311010	70344089	6	-0.613	SMALL-LOSS	FOCAL	1	PCBP1
TCGA.AG.3909.01A	2	70486445	70527923	11	-1.1114	SMALL-LOSS	FOCAL	3	"FAM136A,PCYOX1,SNRPG"
TCGA.CK.5914.01A	2	70486445	70527923	11	-0.7834	SMALL-LOSS	FOCAL	3	"FAM136A,PCYOX1,SNRPG"
TCGA.AA.3982	2	70857324	70858248	4	-0.7933	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	2	70922793	71014764	8	-0.6718	SMALL-LOSS	FOCAL	2	"ADD2,FIGLA"
TCGA.CK.5914.01A	2	71004425	71017508	5	-0.883	SMALL-LOSS	FOCAL	1	FIGLA
TCGA.AG.3909.01A	2	71185137	71337078	31	-0.9761	SMALL-LOSS	FOCAL	5	"ANKRD53,ATP6V1B1,MCEE,NAGK,TEX261"
TCGA.AA.A00N.01A	2	71185137	71415540	48	-0.6995	SMALL-LOSS	FOCAL	7	"ANKRD53,ATP6V1B1,MCEE,MPHOSPH10,NAGK,PAIP2B,TEX261"
TCGA.AF.3914.01A	2	71206188	71220768	11	-0.6856	SMALL-LOSS	FOCAL	2	"ANKRD53,TEX261"
TCGA.AG.4009.01A	2	71206188	71220768	11	-1.2953	SMALL-LOSS	FOCAL	2	"ANKRD53,TEX261"
TCGA.AA.A010.01A	2	71206793	71220768	10	-0.7552	SMALL-LOSS	FOCAL	2	"ANKRD53,TEX261"
TCGA.AA.A01Q.01A	2	71209658	71221761	9	-0.9785	SMALL-LOSS	FOCAL	2	"ANKRD53,TEX261"
TCGA.AG.A01W.01A	2	71654790	71759667	24	-0.5856	SMALL-LOSS	FOCAL	2	"DYSF,ZNF638"
TCGA.AA.A00N.01A	2	71743245	71797329	19	-0.6402	SMALL-LOSS	FOCAL	1	DYSF
TCGA.AG.3909.01A	2	71743245	71797329	18	-0.5629	SMALL-LOSS	FOCAL	1	DYSF
TCGA.AA.3982	2	71981933	71999007	11	-0.6895	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	72419302	72455336	8	-0.79225	SMALL-LOSS	FOCAL	1	EXOC6B
TCGA.AA.3982	2	72419302	72641877	36	-0.5675	SMALL-LOSS	FOCAL	1	EXOC6B
TCGA.AA.3844	2	72419302	72652483	38	-0.6617	SMALL-LOSS	FOCAL	1	EXOC6B
TCGA.AA.3856	2	72464240	72933109	62	-0.8295	SMALL-LOSS	FOCAL	1	EXOC6B
TCGA.AA.3850	2	72610531	72638818	4	-1.02755	SMALL-LOSS	FOCAL	1	EXOC6B
TCGA.AA.3867	2	72610531	72638818	4	-0.8423	SMALL-LOSS	FOCAL	1	EXOC6B
TCGA.AA.3982	2	72787253	72820072	8	-0.6168	SMALL-LOSS	FOCAL	1	EXOC6B
TCGA.AA.A00N.01A	2	73115415	73160884	5	-0.7378	SMALL-LOSS	FOCAL	2	"EMX1,SPR"
TCGA.AG.3909.01A	2	73447014	73474860	21	-1.0959	SMALL-LOSS	FOCAL	3	"CCT7,PRADC1,SMYD5"
TCGA.AG.4009.01A	2	73478323	73519708	12	-0.7622	SMALL-LOSS	FOCAL	3	"CCT7,EGR4,FBXO41"
TCGA.AF.3914.01A	2	73490774	73518933	9	-0.987	SMALL-LOSS	FOCAL	2	"EGR4,FBXO41"
TCGA.CK.5914.01A	2	74040622	74072243	5	-0.5298	SMALL-LOSS	FOCAL	2	"C2orf78,STAMBP"
TCGA.AA.A010.01A	2	74165990	74307570	10	-0.9854	SMALL-LOSS	FOCAL	2	"DGUOK,TET3"
TCGA.AG.3909.01A	2	74326366	74448513	20	-1.0282	SMALL-LOSS	FOCAL	5	"BOLA3,MOB1A,MTHFD2,SLC4A5,TET3"
TCGA.AA.A00Q.01A	2	74479279	74589126	13	-0.6575	SMALL-LOSS	FOCAL	2	"DCTN1,SLC4A5"
TCGA.AG.A02X.01A	2	74588579	74655729	32	-0.7805	SMALL-LOSS	FOCAL	4	"C2orf81,DCTN1,RTKN,WDR54"
TCGA.AA.A00Q.01A	2	74589735	74607071	19	-0.9786	SMALL-LOSS	FOCAL	1	DCTN1
TCGA.AG.3909.01A	2	74599966	74641488	7	-0.6948	SMALL-LOSS	FOCAL	2	"C2orf81,DCTN1"
TCGA.AG.A01W.01A	2	74635320	74642802	8	-0.6713	SMALL-LOSS	FOCAL	1	C2orf81
TCGA.AA.A00Q.01A	2	74649234	74659596	14	-0.7832	SMALL-LOSS	FOCAL	2	"RTKN,WDR54"
TCGA.AA.A01Q.01A	2	74649932	74682893	18	-0.687	SMALL-LOSS	FOCAL	3	"INO80B,RTKN,WDR54"
TCGA.AG.4009.01A	2	74682213	74690280	10	-0.8078	SMALL-LOSS	FOCAL	3	"INO80B,MOGS,WBP1"
TCGA.AA.A01Q.01A	2	74729752	74777291	33	-0.9884	SMALL-LOSS	FOCAL	8	"AUP1,DOK1,DQX1,HTRA2,LBX2,LOXL3,PCGF1,TLX2"
TCGA.AG.4009.01A	2	74733817	74783394	33	-0.8238	SMALL-LOSS	FOCAL	7	"AUP1,DOK1,DQX1,HTRA2,LOXL3,PCGF1,TLX2"
TCGA.AA.A010.01A	2	74745565	74762382	22	-0.9279	SMALL-LOSS	FOCAL	4	"AUP1,DQX1,HTRA2,LOXL3"
TCGA.AG.3909.01A	2	74762382	74763796	5	-0.8225	SMALL-LOSS	FOCAL	1	LOXL3
TCGA.AG.A016.01A	2	74776456	74789293	9	-0.6543	SMALL-LOSS	FOCAL	3	"DOK1,LOXL3,M1AP"
TCGA.AA.3850	2	74934693	74939175	4	-0.89695	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	2	75163549	75165120	3	-0.9149	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	2	75879258	75882183	4	-0.5866	SMALL-LOSS	FOCAL	1	MRPL19
TCGA.AG.3909.01A	2	75921330	75933607	5	-0.8308	SMALL-LOSS	FOCAL	1	GCFC2
TCGA.4N.A93T	2	76156883	76163221	4	-0.9315	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	76262870	79108593	828	-0.7371	SMALL-LOSS	FOCAL	1	LRRTM4
TCGA.AA.3850	2	76328946	84348627	2474	-0.69805	SMALL-LOSS	FOCAL	7	"CTNNA2,LRRTM1,LRRTM4,REG1A,REG1B,REG3A,REG3G"
TCGA.A6.2677	2	77058510	79492025	674	-0.7049	SMALL-LOSS	FOCAL	5	"LRRTM4,REG1A,REG1B,REG3A,REG3G"
TCGA.G4.6626	2	77157182	77334006	80	-0.8992	SMALL-LOSS	FOCAL	1	LRRTM4
TCGA.AG.3592	2	77505164	77850352	100	-0.8276	SMALL-LOSS	FOCAL	1	LRRTM4
TCGA.EI.6508	2	77636908	78668934	275	-0.705	SMALL-LOSS	FOCAL	1	LRRTM4
TCGA.DM.A0X9	2	77687268	77990616	84	-0.7547	SMALL-LOSS	FOCAL	1	LRRTM4
TCGA.D5.5538	2	77797063	78026614	55	-0.5868	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4008	2	77886506	77916761	3	-1.1812	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6294	2	77989564	78457740	136	-0.6761	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6532	2	78014648	78179614	43	-0.7249	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6965	2	78025575	78089188	16	-0.731	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5538	2	78179614	78752196	142	-0.5733	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A0X9	2	78241554	78484700	71	-0.7367	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3866	2	78384745	78457740	12	-0.9795	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3679	2	78994677	78999550	3	-0.9564	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3519	2	80078284	80226748	102	-0.9013	SMALL-LOSS	FOCAL	1	CTNNA2
TCGA.AF.2693	2	80128602	80392891	139	-0.5761	SMALL-LOSS	FOCAL	1	CTNNA2
TCGA.AA.3941	2	80793168	84385628	860	-0.6577	SMALL-LOSS	FOCAL	1	CTNNA2
TCGA.EI.6508	2	81902710	81967926	17	-0.7142	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2677	2	82326535	84431988	452	-0.8647	SMALL-LOSS	FOCAL	0	None
TCGA.CA.5254	2	83148495	84700498	405	-1.1425	SMALL-LOSS	FOCAL	1	SUCLG1
TCGA.AA.A00D.01A	2	85361409	85662477	38	-0.5419	SMALL-LOSS	FOCAL	6	"CAPG,ELMOD3,RETSAT,SH2D6,TCF7L1,TGOLN2"
TCGA.AG.A016.01A	2	85577126	85581432	4	-0.8229	SMALL-LOSS	FOCAL	1	RETSAT
TCGA.A6.3808.01A	2	85628650	85857796	54	-1.1604	SMALL-LOSS	FOCAL	10	"C2orf68,CAPG,GGCX,MAT2A,RNF181,SH2D6,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AA.A00N.01A	2	85661114	85766360	7	-0.6063	SMALL-LOSS	FOCAL	2	"MAT2A,SH2D6"
TCGA.AA.3967.01A	2	85662477	85766360	4	-0.6659	SMALL-LOSS	FOCAL	2	"MAT2A,SH2D6"
TCGA.AF.3914.01A	2	85662477	85779488	15	-0.5472	SMALL-LOSS	FOCAL	3	"GGCX,MAT2A,SH2D6"
TCGA.AG.3909.01A	2	85662477	85857796	46	-0.5705	SMALL-LOSS	FOCAL	9	"C2orf68,GGCX,MAT2A,RNF181,SH2D6,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AA.A010.01A	2	85766360	85782557	17	-1.2638	SMALL-LOSS	FOCAL	2	"GGCX,MAT2A"
TCGA.AA.A00N.01A	2	85777020	85875821	47	-0.8566	SMALL-LOSS	FOCAL	7	"C2orf68,GGCX,RNF181,TMEM150A,USP39,VAMP5,VAMP8"
TCGA.AF.3914.01A	2	85806100	85838581	18	-0.5768	SMALL-LOSS	FOCAL	5	"C2orf68,RNF181,TMEM150A,VAMP5,VAMP8"
TCGA.AG.4009.01A	2	85806100	85838581	17	-1.0643	SMALL-LOSS	FOCAL	5	"C2orf68,RNF181,TMEM150A,VAMP5,VAMP8"
TCGA.AA.A00D.01A	2	85892731	86364539	41	-0.6342	SMALL-LOSS	FOCAL	6	"ATOH8,GNLY,POLR1A,PTCD3,SFTPB,ST3GAL5"
TCGA.A6.6653	2	85972919	85995647	8	-0.6392	SMALL-LOSS	FOCAL	1	ATOH8
TCGA.AA.3941	2	86061392	86063043	4	-0.8616	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	86061392	86078477	6	-0.51905	SMALL-LOSS	FOCAL	1	ST3GAL5
TCGA.AA.A00N.01A	2	86397843	86669123	20	-0.5202	SMALL-LOSS	FOCAL	4	"IMMT,KDM3A,MRPL35,REEP1"
TCGA.AA.A00D.01A	2	86691129	86790352	21	-0.6963	SMALL-LOSS	FOCAL	3	"CHMP3,KDM3A,RNF103-CHMP3"
TCGA.AA.A00N.01A	2	86756304	87085139	29	-0.6917	SMALL-LOSS	FOCAL	6	"CD8A,CD8B,CHMP3,RMND5A,RNF103,RNF103-CHMP3"
TCGA.AA.A010.01A	2	86830935	87012972	15	-1.0256	SMALL-LOSS	FOCAL	4	"CD8A,RMND5A,RNF103,RNF103-CHMP3"
TCGA.AG.A016.01A	2	87243399	88367332	6	-0.675	SMALL-LOSS	FOCAL	6	"KRCC1,PLGLB1,PLGLB2,RGPD1,RGPD2,SMYD1"
TCGA.AA.A00D.01A	2	88870341	88894947	12	-0.8237	SMALL-LOSS	FOCAL	1	EIF2AK3
TCGA.AA.A010.01A	2	88876064	88913205	11	-0.8269	SMALL-LOSS	FOCAL	1	EIF2AK3
TCGA.5M.AATA	2	89125487	91812833	21	-0.7276	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3841	2	89598695	91849289	17	-0.6091	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5913	2	89605000	91849289	17	-0.5562	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	2	89617748	91849289	16	-0.6816	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A50U	2	89626991	91849289	13	-0.8026	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	90259927	95846807	32	-0.6037	SMALL-LOSS	FOCAL	5	"MAL,MRPS5,TEKT4,ZNF2,ZNF514"
TCGA.AG.A01W.01A	2	95314407	95326776	9	-0.7683	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	96012717	96040830	4	-1.1471	SMALL-LOSS	FOCAL	1	KCNIP3
TCGA.AG.4009.01A	2	96697742	96809915	12	-0.8204	SMALL-LOSS	FOCAL	4	"ADRA2B,ASTL,DUSP2,GPAT2"
TCGA.AA.A010.01A	2	96780528	96789549	3	-0.7991	SMALL-LOSS	FOCAL	1	ADRA2B
TCGA.AA.A010.01A	2	96810483	96861097	7	-0.5372	SMALL-LOSS	FOCAL	2	"DUSP2,STARD7"
TCGA.AA.A00N.01A	2	96963052	97017527	18	-1.1682	SMALL-LOSS	FOCAL	3	"ITPRIPL1,NCAPH,SNRNP200"
TCGA.AG.A015.01A	2	97017527	97019874	3	-1.2578	SMALL-LOSS	FOCAL	1	NCAPH
TCGA.AG.4009.01A	2	97213092	97217158	5	-0.8252	SMALL-LOSS	FOCAL	1	ARID5A
TCGA.AA.A01Q.01A	2	97426718	97498221	16	-0.8053	SMALL-LOSS	FOCAL	2	"CNNM3,CNNM4"
TCGA.AG.4009.01A	2	97426718	97533477	31	-0.7412	SMALL-LOSS	FOCAL	5	"ANKRD23,ANKRD39,CNNM3,CNNM4,SEMA4C"
TCGA.AG.3909.01A	2	97427560	97529377	25	-0.7033	SMALL-LOSS	FOCAL	5	"ANKRD23,ANKRD39,CNNM3,CNNM4,SEMA4C"
TCGA.AA.A00N.01A	2	97427560	97544092	37	-0.7112	SMALL-LOSS	FOCAL	6	"ANKRD23,ANKRD39,CNNM3,CNNM4,FAM178B,SEMA4C"
TCGA.AG.3909.01A	2	97637627	97783753	8	-0.8739	SMALL-LOSS	FOCAL	3	"ANKRD36,FAHD2B,FAM178B"
TCGA.AA.A00N.01A	2	97638197	97783753	8	-0.7372	SMALL-LOSS	FOCAL	3	"ANKRD36,FAHD2B,FAM178B"
TCGA.AG.A011.01A	2	98127609	98162074	4	-1.1145	SMALL-LOSS	FOCAL	1	ANKRD36B
TCGA.AA.A00N.01A	2	98192788	98273284	10	-1.159	SMALL-LOSS	FOCAL	3	"ACTR1B,ANKRD36B,COX5B"
TCGA.AA.A01Q.01A	2	98276970	98355836	11	-0.5468	SMALL-LOSS	FOCAL	2	"ACTR1B,ZAP70"
TCGA.AG.3611.01A	2	98340492	98353886	7	-0.6083	SMALL-LOSS	FOCAL	1	ZAP70
TCGA.AG.3909.01A	2	99184987	99232622	10	-1.22	SMALL-LOSS	FOCAL	3	"COA5,INPP4A,UNC50"
TCGA.AA.A00N.01A	2	99184987	99251621	15	-1.2867	SMALL-LOSS	FOCAL	4	"COA5,INPP4A,MGAT4A,UNC50"
TCGA.AA.A010.01A	2	99342657	99463134	10	-0.6133	SMALL-LOSS	FOCAL	2	"KIAA1211L,MGAT4A"
TCGA.AA.A00N.01A	2	99763846	99790328	10	-1.0081	SMALL-LOSS	FOCAL	4	"C2orf15,LIPT1,MITD1,TSGA10"
TCGA.AA.A00N.01A	2	99936098	99953939	6	-0.9652	SMALL-LOSS	FOCAL	2	"EIF5B,TXNDC9"
TCGA.AA.A010.01A	2	100720817	101033371	21	-0.8614	SMALL-LOSS	FOCAL	3	"AFF3,CHST10,LONRF2"
TCGA.AA.A00N.01A	2	100911842	101033371	14	-0.5869	SMALL-LOSS	FOCAL	2	"CHST10,LONRF2"
TCGA.AA.A00N.01A	2	101099624	101437439	9	-0.9828	SMALL-LOSS	FOCAL	3	"NMS,NPAS2,PDCL3"
TCGA.AG.3909.01A	2	101182923	101192769	6	-0.7048	SMALL-LOSS	FOCAL	1	PDCL3
TCGA.AG.3909.01A	2	101598642	101624316	11	-0.579	SMALL-LOSS	FOCAL	3	"NPAS2,RPL31,TBC1D8"
TCGA.AA.A00N.01A	2	101604493	101639997	18	-0.9592	SMALL-LOSS	FOCAL	3	"NPAS2,RPL31,TBC1D8"
TCGA.AA.A00N.01A	2	101767537	102407112	33	-0.5197	SMALL-LOSS	FOCAL	6	"CNOT11,CREG2,MAP4K4,RFX8,RNF149,TBC1D8"
TCGA.EI.6508	2	102374958	102457555	18	-0.6486	SMALL-LOSS	FOCAL	1	MAP4K4
TCGA.AA.A00N.01A	2	102632306	102988396	40	-0.8621	SMALL-LOSS	FOCAL	5	"IL18R1,IL1R1,IL1R2,IL1RL1,IL1RL2"
TCGA.AA.3864	2	102912663	102915661	4	-0.872	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	2	102957643	102984288	8	-0.5367	SMALL-LOSS	FOCAL	2	"IL18R1,IL1RL1"
TCGA.AA.A00D.01A	2	103053624	103300571	24	-0.8133	SMALL-LOSS	FOCAL	3	"IL18RAP,SLC9A2,SLC9A4"
TCGA.AA.3850	2	103425859	104827990	306	-0.68145	SMALL-LOSS	FOCAL	1	TMEM182
TCGA.AA.3872	2	103596059	103598423	4	-1.3043	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	2	105858305	105883793	3	-1.1254	SMALL-LOSS	FOCAL	2	"GPR45,TGFBRAP1"
TCGA.F5.6863	2	106214571	106222836	3	-0.7521	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	106780054	108496487	33	-0.6937	SMALL-LOSS	FOCAL	4	"RGPD3,RGPD4,ST6GAL2,UXS1"
TCGA.AZ.4308	2	106900545	108700569	510	-0.6407	SMALL-LOSS	FOCAL	4	"RGPD3,RGPD4,SLC5A7,ST6GAL2"
TCGA.AG.3909.01A	2	108604565	108614253	4	-1.1438	SMALL-LOSS	FOCAL	1	SLC5A7
TCGA.AA.A00L.01A	2	108604565	108626671	8	-1.0852	SMALL-LOSS	FOCAL	1	SLC5A7
TCGA.AG.3611.01A	2	108604565	108626671	8	-0.711	SMALL-LOSS	FOCAL	1	SLC5A7
TCGA.A6.3808.01A	2	108998810	109089253	14	-0.7292	SMALL-LOSS	FOCAL	2	"GCC2,SULT1C4"
TCGA.AG.3909.01A	2	109066016	109068797	3	-0.9519	SMALL-LOSS	FOCAL	1	GCC2
TCGA.AA.A00L.01A	2	109379646	109526885	31	-0.545	SMALL-LOSS	FOCAL	3	"CCDC138,EDAR,RANBP2"
TCGA.AA.A00N.01A	2	109384553	109414856	16	-1.2328	SMALL-LOSS	FOCAL	2	"CCDC138,RANBP2"
TCGA.AG.3909.01A	2	109393569	109411005	9	-0.9831	SMALL-LOSS	FOCAL	2	"CCDC138,RANBP2"
TCGA.AG.4008	2	109582356	109586436	8	-1.0826	SMALL-LOSS	FOCAL	1	EDAR
TCGA.AA.A00N.01A	2	110342671	110375926	7	-1.075	SMALL-LOSS	FOCAL	2	"SEPT10,SOWAHC"
TCGA.AA.A00L.01A	2	110922109	111921663	51	-0.5238	SMALL-LOSS	FOCAL	8	"ACOXL,BCL2L11,BUB1,LIMS3,LIMS3L,NPHP1,RGPD5,RGPD6"
TCGA.AG.3909.01A	2	112630846	112638143	4	-1.0358	SMALL-LOSS	FOCAL	1	ANAPC1
TCGA.AA.A00N.01A	2	113239885	113332412	22	-0.5159	SMALL-LOSS	FOCAL	2	"POLR1B,TTL"
TCGA.AG.3909.01A	2	113286210	113310205	8	-0.5485	SMALL-LOSS	FOCAL	2	"POLR1B,TTL"
TCGA.AG.3909.01A	2	113404355	113410241	4	-1.142	SMALL-LOSS	FOCAL	1	SLC20A1
TCGA.AG.4009.01A	2	113404355	113416371	6	-0.8025	SMALL-LOSS	FOCAL	1	SLC20A1
TCGA.AA.A010.01A	2	113404355	113420424	10	-0.8468	SMALL-LOSS	FOCAL	1	SLC20A1
TCGA.A6.3808.01A	2	113404355	113513887	30	-1.1139	SMALL-LOSS	FOCAL	2	"CKAP2L,SLC20A1"
TCGA.AA.A00N.01A	2	113414553	113420424	6	-0.8183	SMALL-LOSS	FOCAL	1	SLC20A1
TCGA.AA.A00N.01A	2	113496388	113520015	10	-0.8003	SMALL-LOSS	FOCAL	1	CKAP2L
TCGA.AG.3909.01A	2	113509807	113520015	5	-0.8525	SMALL-LOSS	FOCAL	1	CKAP2L
TCGA.AA.3982	2	113777392	113785019	7	-0.7938	SMALL-LOSS	FOCAL	1	IL36B
TCGA.AA.3844	2	113777392	113785841	8	-0.8484	SMALL-LOSS	FOCAL	1	IL36B
TCGA.AA.A01Q.01A	2	113942507	113958686	13	-0.7191	SMALL-LOSS	FOCAL	1	PSD4
TCGA.D5.6537	2	114276299	114313312	3	-0.9357	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6295	2	114276299	114313312	3	-0.7726	SMALL-LOSS	FOCAL	0	None
TCGA.G5.6572	2	114276299	114325088	4	-1.295	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3819	2	114276299	114406942	8	-0.994	SMALL-LOSS	FOCAL	1	RABL2A
TCGA.AG.3882	2	114276299	114406942	8	-1.1936	SMALL-LOSS	FOCAL	1	RABL2A
TCGA.AA.A00N.01A	2	114390407	114503815	20	-0.959	SMALL-LOSS	FOCAL	2	"RABL2A,SLC35F5"
TCGA.AA.A010.01A	2	114476683	114493314	8	-1.2162	SMALL-LOSS	FOCAL	1	SLC35F5
TCGA.AA.3850	2	114914561	118356510	917	-0.53565	SMALL-LOSS	FOCAL	1	DPP10
TCGA.CK.5914.01A	2	116538420	118588110	21	-0.6202	SMALL-LOSS	FOCAL	2	"DDX18,DPP10"
TCGA.AA.3544	2	117029941	117798497	193	-0.6375	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3529	2	117389475	117632657	42	-0.5174	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	2	117772651	117798497	5	-0.9886	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	2	118572299	118588110	12	-0.5555	SMALL-LOSS	FOCAL	1	DDX18
TCGA.AA.A00N.01A	2	118574978	118588110	11	-0.8087	SMALL-LOSS	FOCAL	1	DDX18
TCGA.AG.A015.01A	2	118578695	118586452	7	-0.7292	SMALL-LOSS	FOCAL	1	DDX18
TCGA.AA.A00D.01A	2	118586452	118735487	20	-0.9077	SMALL-LOSS	FOCAL	2	"CCDC93,DDX18"
TCGA.AA.A00N.01A	2	118752959	118766069	5	-1.0663	SMALL-LOSS	FOCAL	1	CCDC93
TCGA.AA.A00D.01A	2	119726709	119734982	5	-1.1098	SMALL-LOSS	FOCAL	1	MARCO
TCGA.4N.A93T	2	119840083	119841328	5	-0.8557	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	2	119988503	120005236	4	-0.6586	SMALL-LOSS	FOCAL	1	STEAP3
TCGA.CK.5914.01A	2	120125445	120187869	6	-0.6965	SMALL-LOSS	FOCAL	1	DBI
TCGA.AG.3909.01A	2	120125445	120194436	5	-0.9043	SMALL-LOSS	FOCAL	2	"DBI,TMEM37"
TCGA.AA.A00N.01A	2	120404480	120620100	9	-0.6753	SMALL-LOSS	FOCAL	3	"CFAP221,PTPN4,TMEM177"
TCGA.AA.3850	2	120669888	120741082	5	-1.04275	SMALL-LOSS	FOCAL	1	PTPN4
TCGA.AA.3982	2	120870128	120891968	5	-0.9154	SMALL-LOSS	FOCAL	1	EPB41L5
TCGA.CM.5349	2	121088181	122569326	452	-0.5255	SMALL-LOSS	FOCAL	6	"CLASP1,GLI2,INHBB,NIFK,TFCP2L1,TSN"
TCGA.AG.3727	2	121676654	121687128	4	-0.8124	SMALL-LOSS	FOCAL	1	GLI2
TCGA.AG.3906.01A	2	122104566	122125116	5	-0.6289	SMALL-LOSS	FOCAL	1	CLASP1
TCGA.AG.3909.01A	2	122488429	124783178	11	-0.819	SMALL-LOSS	FOCAL	3	"CNTNAP5,NIFK,TSN"
TCGA.AA.3850	2	123493146	127041554	1066	-0.61045	SMALL-LOSS	FOCAL	1	CNTNAP5
TCGA.T9.A92H	2	123773969	123823438	26	-0.7007	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3967.01A	2	124783178	127807955	29	-0.5389	SMALL-LOSS	FOCAL	3	"BIN1,CNTNAP5,GYPC"
TCGA.AF.2693	2	125694140	125814564	15	-0.6165	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5667	2	127442845	127443770	3	-1.1919	SMALL-LOSS	FOCAL	1	GYPC
TCGA.AA.A01Q.01A	2	127806060	127950663	21	-0.5808	SMALL-LOSS	FOCAL	2	"BIN1,CYP27C1"
TCGA.AA.A010.01A	2	127952869	127960899	4	-1.2012	SMALL-LOSS	FOCAL	1	CYP27C1
TCGA.AA.A00N.01A	2	128260328	128281212	5	-0.6288	SMALL-LOSS	FOCAL	1	IWS1
TCGA.AG.A015.01A	2	128327326	128380749	18	-0.6001	SMALL-LOSS	FOCAL	1	MYO7B
TCGA.AA.3967.01A	2	128382901	128389128	7	-1.145	SMALL-LOSS	FOCAL	1	MYO7B
TCGA.AA.3939.01A	2	128385896	128466224	33	-0.6681	SMALL-LOSS	FOCAL	5	"GPR17,LIMS2,MYO7B,SFT2D3,WDR33"
TCGA.AA.A00N.01A	2	128407518	128459061	10	-0.6171	SMALL-LOSS	FOCAL	3	"GPR17,LIMS2,SFT2D3"
TCGA.AA.A010.01A	2	128407518	128459061	9	-1.1779	SMALL-LOSS	FOCAL	3	"GPR17,LIMS2,SFT2D3"
TCGA.CK.5914.01A	2	128407518	128462665	13	-0.8111	SMALL-LOSS	FOCAL	4	"GPR17,LIMS2,SFT2D3,WDR33"
TCGA.AA.A00N.01A	2	128463856	128631391	30	-0.7636	SMALL-LOSS	FOCAL	3	"AMMECR1L,POLR2D,WDR33"
TCGA.AA.A010.01A	2	128471125	128631391	27	-0.6317	SMALL-LOSS	FOCAL	3	"AMMECR1L,POLR2D,WDR33"
TCGA.AG.3909.01A	2	128605624	128631391	9	-1.2001	SMALL-LOSS	FOCAL	2	"AMMECR1L,POLR2D"
TCGA.NH.A6GC	2	130549274	130551924	3	-0.9692	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	2	130918701	131102173	23	-1.1472	SMALL-LOSS	FOCAL	5	"CCDC115,IMP4,MZT2B,SMPD4,TUBA3E"
TCGA.AA.A01Q.01A	2	130921895	130934067	6	-0.993	SMALL-LOSS	FOCAL	1	SMPD4
TCGA.AA.3861.01A	2	130955831	131132150	19	-0.7134	SMALL-LOSS	FOCAL	4	"CCDC115,IMP4,PTPN18,TUBA3E"
TCGA.AA.3862.01A	2	131096652	131132150	19	-0.5906	SMALL-LOSS	FOCAL	3	"CCDC115,IMP4,PTPN18"
TCGA.AA.A01Q.01A	2	131796389	131800993	5	-0.8225	SMALL-LOSS	FOCAL	1	ARHGEF4
TCGA.AA.A02K.01A	2	131796390	131799341	4	-0.5219	SMALL-LOSS	FOCAL	1	ARHGEF4
TCGA.DC.6157	2	131910880	132096386	9	-0.9962	SMALL-LOSS	FOCAL	1	POTEE
TCGA.AG.3909.01A	2	132110623	133430774	27	-0.5395	SMALL-LOSS	FOCAL	10	"C2orf27A,C2orf27B,CCDC74A,GPR39,LYPD1,MZT2A,NCKAP5,TUBA3D,WTH3DI,ZNF806"
TCGA.DC.6157	2	132363283	132384380	7	-0.7884	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D7	2	133086908	133103440	4	-1.1956	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	2	133503783	134003753	236	-0.8275	SMALL-LOSS	FOCAL	1	NCKAP5
TCGA.AA.A00D.01A	2	135011923	135170391	12	-0.9599	SMALL-LOSS	FOCAL	1	MGAT5
TCGA.AA.3941	2	135048530	135086957	26	-0.6844	SMALL-LOSS	FOCAL	1	MGAT5
TCGA.AA.A00N.01A	2	135655859	135881678	34	-0.7227	SMALL-LOSS	FOCAL	4	"ACMSD,CCNT2,MAP3K19,RAB3GAP1"
TCGA.A6.3808.01A	2	135975027	136590629	72	-0.7594	SMALL-LOSS	FOCAL	4	"LCT,R3HDM1,UBXN4,ZRANB3"
TCGA.CK.5914.01A	2	135981945	136033159	8	-0.5386	SMALL-LOSS	FOCAL	1	ZRANB3
TCGA.AG.A00C.01A	2	136261849	136479985	22	-0.7046	SMALL-LOSS	FOCAL	2	"R3HDM1,ZRANB3"
TCGA.AG.3909.01A	2	136466984	136513050	11	-0.719	SMALL-LOSS	FOCAL	2	"R3HDM1,UBXN4"
TCGA.AA.A00N.01A	2	136466984	136527369	13	-0.9045	SMALL-LOSS	FOCAL	2	"R3HDM1,UBXN4"
TCGA.AG.A00C.01A	2	136527369	136623685	38	-0.774	SMALL-LOSS	FOCAL	3	"LCT,MCM6,UBXN4"
TCGA.AA.A00N.01A	2	136608925	136630230	12	-0.7164	SMALL-LOSS	FOCAL	1	MCM6
TCGA.CK.5914.01A	2	136736793	136875547	6	-0.5305	SMALL-LOSS	FOCAL	2	"CXCR4,DARS"
TCGA.AA.3850	2	137159382	137162263	5	-0.52495	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	137224640	148683918	3290	-0.72425	SMALL-LOSS	FOCAL	10	"ACVR2A,ARHGAP15,GTDC1,HNMT,KYNU,LRP1B,NXPH2,SPOPL,THSD7B,ZEB2"
TCGA.AA.3544	2	138000225	138643849	197	-0.7258	SMALL-LOSS	FOCAL	1	THSD7B
TCGA.EI.6508	2	138755991	139293609	101	-0.6981	SMALL-LOSS	FOCAL	2	"HNMT,SPOPL"
TCGA.DM.A1D9	2	138859645	139135404	63	-0.7402	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D6	2	139044851	139153683	25	-1.1432	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6309	2	139427668	139694250	100	-0.9566	SMALL-LOSS	FOCAL	1	NXPH2
TCGA.AA.3982	2	140668203	148756667	2173	-0.5321	SMALL-LOSS	FOCAL	7	"ACVR2A,ARHGAP15,GTDC1,KYNU,LRP1B,ORC4,ZEB2"
TCGA.AA.A010.01A	2	140990718	141213994	30	-0.7927	SMALL-LOSS	FOCAL	1	LRP1B
TCGA.AA.A00L.01A	2	140990718	149267570	166	-0.774	SMALL-LOSS	FOCAL	8	"ACVR2A,ARHGAP15,GTDC1,KYNU,LRP1B,MBD5,ORC4,ZEB2"
TCGA.AA.A00D.01A	2	140995689	149267570	164	-0.818	SMALL-LOSS	FOCAL	8	"ACVR2A,ARHGAP15,GTDC1,KYNU,LRP1B,MBD5,ORC4,ZEB2"
TCGA.AA.3867	2	141230536	141265079	9	-1.0647	SMALL-LOSS	FOCAL	1	LRP1B
TCGA.G4.6626	2	141638379	142165631	184	-1.0925	SMALL-LOSS	FOCAL	1	LRP1B
TCGA.A6.3810.01A	2	141751517	142237933	14	-0.5653	SMALL-LOSS	FOCAL	1	LRP1B
TCGA.AA.3811	2	141882094	142143030	78	-0.9676	SMALL-LOSS	FOCAL	1	LRP1B
TCGA.D5.6531	2	142143030	142196010	19	-0.9483	SMALL-LOSS	FOCAL	1	LRP1B
TCGA.AA.3679	2	142196010	142213885	7	-1.083	SMALL-LOSS	FOCAL	1	LRP1B
TCGA.5M.AAT5	2	142585904	142586199	3	-1.2335	SMALL-LOSS	FOCAL	1	LRP1B
TCGA.AA.A00N.01A	2	144699690	144764711	7	-1.154	SMALL-LOSS	FOCAL	1	GTDC1
TCGA.AG.3611.01A	2	144704564	144764711	6	-0.6348	SMALL-LOSS	FOCAL	1	GTDC1
TCGA.D5.5538	2	145946156	150793154	1097	-0.598	SMALL-LOSS	FOCAL	8	"ACVR2A,EPC2,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,ORC4"
TCGA.AA.3544	2	147465194	150509387	679	-0.5906	SMALL-LOSS	FOCAL	8	"ACVR2A,EPC2,KIF5C,LYPD6,LYPD6B,MBD5,MMADHC,ORC4"
TCGA.AA.3811	2	147999338	148095650	8	-1.164	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3939.01A	2	148705603	148730275	6	-0.878	SMALL-LOSS	FOCAL	1	ORC4
TCGA.AA.3939.01A	2	148730959	149225863	6	-0.5595	SMALL-LOSS	FOCAL	2	"MBD5,ORC4"
TCGA.EI.6882	2	148747977	149151357	70	-0.8373	SMALL-LOSS	FOCAL	2	"MBD5,ORC4"
TCGA.AA.A00D.01A	2	150294195	151343733	16	-0.7675	SMALL-LOSS	FOCAL	3	"LYPD6,MMADHC,RND3"
TCGA.AA.A00Q.01A	2	150294195	152139346	26	-0.6335	SMALL-LOSS	FOCAL	5	"LYPD6,MMADHC,NMI,RBM43,RND3"
TCGA.AA.A00N.01A	2	151326454	151343733	5	-1.1764	SMALL-LOSS	FOCAL	1	RND3
TCGA.AG.3909.01A	2	151326454	152139346	14	-1.0059	SMALL-LOSS	FOCAL	3	"NMI,RBM43,RND3"
TCGA.D5.5538	2	151860902	153473793	534	-0.5931	SMALL-LOSS	FOCAL	9	"ARL5A,CACNB4,FMNL2,NEB,NMI,RBM43,RIF1,STAM2,TNFAIP6"
TCGA.AA.A00N.01A	2	152267722	152285248	7	-1.1771	SMALL-LOSS	FOCAL	1	RIF1
TCGA.DM.A28M.01A	2	152267722	152302918	18	-0.5633	SMALL-LOSS	FOCAL	1	RIF1
TCGA.AG.3909.01A	2	152267722	152311400	20	-0.5586	SMALL-LOSS	FOCAL	1	RIF1
TCGA.AA.3862.01A	2	152346448	152421521	60	-0.8835	SMALL-LOSS	FOCAL	1	NEB
TCGA.AA.3861.01A	2	152349813	152418572	53	-0.9309	SMALL-LOSS	FOCAL	1	NEB
TCGA.AA.A00N.01A	2	152668821	152737293	15	-1.1476	SMALL-LOSS	FOCAL	2	"ARL5A,CACNB4"
TCGA.AG.4009.01A	2	152728873	152739748	4	-0.8917	SMALL-LOSS	FOCAL	1	CACNB4
TCGA.AA.A00N.01A	2	153000291	153006615	5	-1.0083	SMALL-LOSS	FOCAL	1	STAM2
TCGA.AG.A011.01A	2	153530060	153535520	4	-0.5873	SMALL-LOSS	FOCAL	1	PRPF40A
TCGA.AA.A00N.01A	2	153571050	153591460	8	-1.054	SMALL-LOSS	FOCAL	2	"ARL6IP6,PRPF40A"
TCGA.AA.3941	2	153843190	158518944	1103	-0.5909	SMALL-LOSS	FOCAL	10	"ACVR1C,CYTIP,ERMN,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NR4A2,RPRM"
TCGA.AA.3850	2	154223945	158542781	985	-0.77295	SMALL-LOSS	FOCAL	10	"ACVR1C,CYTIP,ERMN,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NR4A2,RPRM"
TCGA.CM.6675	2	154649845	154966475	104	-1.0709	SMALL-LOSS	FOCAL	1	GALNT13
TCGA.AG.3906.01A	2	155295054	155711190	5	-0.7199	SMALL-LOSS	FOCAL	3	"GALNT13,KCNJ3,LOC100144595"
TCGA.AA.A010.01A	2	155711190	157352508	10	-1.0326	SMALL-LOSS	FOCAL	3	"GPD2,KCNJ3,NR4A2"
TCGA.CK.5914.01A	2	157182249	157185788	6	-0.7371	SMALL-LOSS	FOCAL	1	NR4A2
TCGA.EI.6513	2	158940264	159519367	171	-0.7997	SMALL-LOSS	FOCAL	3	"CCDC148,PKP4,UPP2"
TCGA.AA.A010.01A	2	158971584	159107287	10	-0.7859	SMALL-LOSS	FOCAL	2	"CCDC148,UPP2"
TCGA.AA.A00Q.01A	2	159032986	159165913	5	-1.1794	SMALL-LOSS	FOCAL	1	CCDC148
TCGA.AA.3697	2	159176337	159447317	75	-0.8437	SMALL-LOSS	FOCAL	2	"CCDC148,PKP4"
TCGA.CM.6170	2	160591647	161014252	164	-0.6403	SMALL-LOSS	FOCAL	6	"CD302,ITGB6,LY75,LY75-CD302,MARCH7,PLA2R1"
TCGA.AA.A00D.01A	2	160608871	161055633	85	-0.7075	SMALL-LOSS	FOCAL	6	"CD302,ITGB6,LY75,LY75-CD302,MARCH7,PLA2R1"
TCGA.AA.A00L.01A	2	160608871	162279858	115	-0.5991	SMALL-LOSS	FOCAL	10	"CD302,ITGB6,LY75,LY75-CD302,MARCH7,PLA2R1,PSMD14,RBMS1,TANK,TBR1"
TCGA.AA.A00N.01A	2	160634364	160676190	11	-0.5253	SMALL-LOSS	FOCAL	3	"CD302,LY75,LY75-CD302"
TCGA.AA.A010.01A	2	160731907	160750398	9	-0.866	SMALL-LOSS	FOCAL	2	"LY75,LY75-CD302"
TCGA.AA.A00N.01A	2	160737573	160755159	7	-1.1191	SMALL-LOSS	FOCAL	2	"LY75,LY75-CD302"
TCGA.AA.A00N.01A	2	161132085	161143443	7	-1.1296	SMALL-LOSS	FOCAL	1	RBMS1
TCGA.AA.A010.01A	2	162059288	162072836	4	-0.8547	SMALL-LOSS	FOCAL	1	TANK
TCGA.AA.A01K.01A	2	162059288	162999777	73	-0.6453	SMALL-LOSS	FOCAL	6	"DPP4,GCG,PSMD14,SLC4A10,TANK,TBR1"
TCGA.AA.A010.01A	2	162175259	162276641	15	-0.9925	SMALL-LOSS	FOCAL	2	"PSMD14,TBR1"
TCGA.AG.4009.01A	2	162265278	162279858	8	-0.9696	SMALL-LOSS	FOCAL	2	"PSMD14,TBR1"
TCGA.CK.5914.01A	2	162265278	162279858	8	-0.674	SMALL-LOSS	FOCAL	2	"PSMD14,TBR1"
TCGA.AA.A01C.01A	2	162274140	162279858	5	-0.5702	SMALL-LOSS	FOCAL	1	TBR1
TCGA.AA.A00Q.01A	2	162849745	163693020	88	-0.5786	SMALL-LOSS	FOCAL	6	"DPP4,FAP,GCA,GCG,IFIH1,KCNH7"
TCGA.AG.3909.01A	2	162862190	162881265	13	-0.5202	SMALL-LOSS	FOCAL	1	DPP4
TCGA.D5.5538	2	164332356	165427824	266	-0.5956	SMALL-LOSS	FOCAL	2	"FIGN,GRB14"
TCGA.AA.3867	2	166353491	166380514	10	-0.7593	SMALL-LOSS	FOCAL	1	CSRNP3
TCGA.AA.A010.01A	2	166781021	166858955	17	-1.169	SMALL-LOSS	FOCAL	2	"SCN1A,TTC21B"
TCGA.AA.A00N.01A	2	166788219	166805855	6	-1.1361	SMALL-LOSS	FOCAL	1	TTC21B
TCGA.G4.6317	2	167171189	167196193	4	-0.7964	SMALL-LOSS	FOCAL	1	SCN9A
TCGA.AA.A01Q.01A	2	168099062	168114355	5	-0.6978	SMALL-LOSS	FOCAL	1	XIRP2
TCGA.AA.A00D.01A	2	169312922	170151089	104	-0.7097	SMALL-LOSS	FOCAL	7	"ABCB11,CERS6,DHRS9,G6PC2,LRP2,NOSTRIN,SPC25"
TCGA.AA.A00N.01A	2	169547468	169574334	4	-1.1689	SMALL-LOSS	FOCAL	1	CERS6
TCGA.AA.A01C.01A	2	169684598	169707577	6	-0.6526	SMALL-LOSS	FOCAL	1	NOSTRIN
TCGA.AA.3982	2	169784412	169824982	29	-0.7408	SMALL-LOSS	FOCAL	1	ABCB11
TCGA.AA.3941	2	169784412	169881499	53	-0.8462	SMALL-LOSS	FOCAL	1	ABCB11
TCGA.AG.4009.01A	2	170163739	170366337	14	-0.72	SMALL-LOSS	FOCAL	3	"BBS5,KLHL41,LRP2"
TCGA.AA.A01K.01A	2	170335995	170371037	12	-0.8695	SMALL-LOSS	FOCAL	2	"BBS5,KLHL41"
TCGA.CK.5914.01A	2	170335995	170374703	13	-1.0035	SMALL-LOSS	FOCAL	2	"BBS5,KLHL41"
TCGA.AG.3909.01A	2	170338704	170371037	11	-1.2416	SMALL-LOSS	FOCAL	2	"BBS5,KLHL41"
TCGA.CK.5914.01A	2	170557495	170734959	25	-0.6913	SMALL-LOSS	FOCAL	6	"KLHL23,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,SSB,UBR3"
TCGA.AA.A01K.01A	2	170591473	170680967	17	-1.0606	SMALL-LOSS	FOCAL	4	"KLHL23,METTL5,PHOSPHO2-KLHL23,SSB"
TCGA.AG.3909.01A	2	170591473	170680967	17	-1.283	SMALL-LOSS	FOCAL	4	"KLHL23,METTL5,PHOSPHO2-KLHL23,SSB"
TCGA.AG.4009.01A	2	170591473	170680967	17	-0.928	SMALL-LOSS	FOCAL	4	"KLHL23,METTL5,PHOSPHO2-KLHL23,SSB"
TCGA.AA.3509.01A	2	170629807	170734959	21	-0.5522	SMALL-LOSS	FOCAL	3	"METTL5,SSB,UBR3"
TCGA.AA.A00N.01A	2	170684007	170732293	3	-0.5589	SMALL-LOSS	FOCAL	1	UBR3
TCGA.AA.3982	2	171123122	171136567	12	-0.9183	SMALL-LOSS	FOCAL	1	MYO3B
TCGA.AA.A010.01A	2	171570109	171655232	8	-0.854	SMALL-LOSS	FOCAL	2	"ERICH2,SP5"
TCGA.AA.A00N.01A	2	171570109	171702447	17	-0.6168	SMALL-LOSS	FOCAL	3	"ERICH2,GAD1,SP5"
TCGA.AA.A010.01A	2	171793037	171853126	12	-1.146	SMALL-LOSS	FOCAL	2	"GORASP2,TLK1"
TCGA.AA.A00N.01A	2	172291541	172309607	5	-1.2705	SMALL-LOSS	FOCAL	1	DCAF17
TCGA.AA.A010.01A	2	172300018	172336496	12	-0.7168	SMALL-LOSS	FOCAL	1	DCAF17
TCGA.AA.A00N.01A	2	172378711	172411045	6	-0.5396	SMALL-LOSS	FOCAL	1	CYBRD1
TCGA.AA.A010.01A	2	172690423	172750620	9	-0.8272	SMALL-LOSS	FOCAL	1	SLC25A12
TCGA.AA.A00N.01A	2	172926199	172966173	14	-1.1724	SMALL-LOSS	FOCAL	3	"DLX1,DLX2,METAP1D"
TCGA.AG.3909.01A	2	172930940	172966826	11	-0.9773	SMALL-LOSS	FOCAL	3	"DLX1,DLX2,METAP1D"
TCGA.AG.3611.01A	2	172930940	173332150	14	-0.6074	SMALL-LOSS	FOCAL	4	"DLX1,DLX2,ITGA6,METAP1D"
TCGA.AG.3909.01A	2	173423389	173435427	8	-0.8138	SMALL-LOSS	FOCAL	1	PDK1
TCGA.CK.5914.01A	2	173423389	173435427	9	-0.5392	SMALL-LOSS	FOCAL	1	PDK1
TCGA.AA.A00N.01A	2	174125739	174820344	17	-0.6873	SMALL-LOSS	FOCAL	3	"CDCA7,SP3,ZAK"
TCGA.AA.3982	2	174413508	174478166	23	-0.5168	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	2	174967512	175067456	28	-0.6119	SMALL-LOSS	FOCAL	1	OLA1
TCGA.A6.3808.01A	2	175006501	175629002	57	-0.9432	SMALL-LOSS	FOCAL	7	"CHRNA1,CIR1,GPR155,OLA1,SCRN3,SP9,WIPF1"
TCGA.AA.A00N.01A	2	175111392	175268780	19	-1.2482	SMALL-LOSS	FOCAL	4	"CIR1,OLA1,SCRN3,SP9"
TCGA.AG.3909.01A	2	175263010	175268780	4	-1.262	SMALL-LOSS	FOCAL	1	SCRN3
TCGA.AA.A00N.01A	2	175330486	175431744	9	-1.0853	SMALL-LOSS	FOCAL	2	"GPR155,WIPF1"
TCGA.AG.3909.01A	2	175337656	175445989	9	-0.7362	SMALL-LOSS	FOCAL	2	"GPR155,WIPF1"
TCGA.AA.A010.01A	2	175816810	175994804	13	-1.1751	SMALL-LOSS	FOCAL	2	"ATF2,CHN1"
TCGA.AA.A00N.01A	2	175945351	175994804	10	-1.1242	SMALL-LOSS	FOCAL	1	ATF2
TCGA.AG.4009.01A	2	175957752	175986134	7	-0.8324	SMALL-LOSS	FOCAL	1	ATF2
TCGA.AA.3989	2	175980544	175987678	5	-0.9788	SMALL-LOSS	FOCAL	1	ATF2
TCGA.AA.A01Q.01A	2	176944788	177017324	18	-0.9328	SMALL-LOSS	FOCAL	8	"EVX2,HOXD10,HOXD11,HOXD12,HOXD13,HOXD4,HOXD8,HOXD9"
TCGA.AF.3914.01A	2	176957569	177033803	16	-1.2655	SMALL-LOSS	FOCAL	8	"HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9"
TCGA.CK.5914.01A	2	178080219	178083713	5	-0.8617	SMALL-LOSS	FOCAL	1	HNRNPA3
TCGA.EI.6508	2	178166885	178360074	51	-0.6659	SMALL-LOSS	FOCAL	1	AGPS
TCGA.AG.3909.01A	2	178968988	178990682	10	-0.5444	SMALL-LOSS	FOCAL	2	"PDE11A,RBM45"
TCGA.AA.A00N.01A	2	178980952	178990682	8	-1.1501	SMALL-LOSS	FOCAL	1	RBM45
TCGA.AG.3611.01A	2	179296776	179342996	11	-0.5321	SMALL-LOSS	FOCAL	3	"DFNB59,FKBP7,PRKRA"
TCGA.AA.A00N.01A	2	179296776	179368460	29	-1.3101	SMALL-LOSS	FOCAL	4	"DFNB59,FKBP7,PLEKHA3,PRKRA"
TCGA.AG.3909.01A	2	179296776	179368460	26	-0.9291	SMALL-LOSS	FOCAL	4	"DFNB59,FKBP7,PLEKHA3,PRKRA"
TCGA.AA.A010.01A	2	179318090	179337774	9	-0.7091	SMALL-LOSS	FOCAL	2	"DFNB59,FKBP7"
TCGA.AG.4009.01A	2	179318090	179367031	16	-0.751	SMALL-LOSS	FOCAL	3	"DFNB59,FKBP7,PLEKHA3"
TCGA.AA.A010.01A	2	179353611	179367031	7	-0.7777	SMALL-LOSS	FOCAL	1	PLEKHA3
TCGA.AA.A02E.01A	2	179443321	179444708	3	-1.0109	SMALL-LOSS	FOCAL	1	TTN
TCGA.AA.A010.01A	2	179446986	179512051	66	-0.5899	SMALL-LOSS	FOCAL	1	TTN
TCGA.A6.3808.01A	2	179511780	179529127	13	-0.7128	SMALL-LOSS	FOCAL	1	TTN
TCGA.AA.A010.01A	2	179513920	179515912	6	-1.2893	SMALL-LOSS	FOCAL	1	TTN
TCGA.AA.A010.01A	2	179516596	179534896	10	-0.5381	SMALL-LOSS	FOCAL	1	TTN
TCGA.AG.A00H.01A	2	179540588	179571172	41	-0.8141	SMALL-LOSS	FOCAL	1	TTN
TCGA.AA.A01K.01A	2	179545755	179591780	57	-0.5214	SMALL-LOSS	FOCAL	1	TTN
TCGA.AA.A017.01A	2	179546336	179565791	22	-0.5912	SMALL-LOSS	FOCAL	1	TTN
TCGA.AG.A015.01A	2	179549922	179569854	22	-0.6158	SMALL-LOSS	FOCAL	1	TTN
TCGA.AA.A00A.01A	2	179610285	179742594	52	-0.8318	SMALL-LOSS	FOCAL	2	"CCDC141,TTN"
TCGA.AA.A00D.01A	2	179610285	179742594	54	-1.0859	SMALL-LOSS	FOCAL	2	"CCDC141,TTN"
TCGA.AA.A00L.01A	2	179610285	179742594	52	-0.9303	SMALL-LOSS	FOCAL	2	"CCDC141,TTN"
TCGA.AA.A00Q.01A	2	179610285	180013973	66	-0.7305	SMALL-LOSS	FOCAL	3	"CCDC141,SESTD1,TTN"
TCGA.AA.A00D.01A	2	179974596	180347949	22	-0.9392	SMALL-LOSS	FOCAL	2	"SESTD1,ZNF385B"
TCGA.AA.A00D.01A	2	180383213	183386965	54	-0.5505	SMALL-LOSS	FOCAL	9	"CERKL,CWC22,ITGA4,NEUROD1,PDE1A,PPP1R1C,SSFA2,UBE2E3,ZNF385B"
TCGA.CK.5914.01A	2	181846739	181854556	4	-0.613	SMALL-LOSS	FOCAL	1	UBE2E3
TCGA.AA.A00N.01A	2	181846739	182350558	16	-0.5534	SMALL-LOSS	FOCAL	2	"ITGA4,UBE2E3"
TCGA.AA.A01Q.01A	2	181848695	182363333	6	-0.5687	SMALL-LOSS	FOCAL	2	"ITGA4,UBE2E3"
TCGA.AA.A010.01A	2	182412318	182468513	8	-0.6744	SMALL-LOSS	FOCAL	1	CERKL
TCGA.AG.3909.01A	2	182521505	182766471	9	-0.7603	SMALL-LOSS	FOCAL	3	"CERKL,NEUROD1,SSFA2"
TCGA.AG.4009.01A	2	182542500	182774576	9	-0.8958	SMALL-LOSS	FOCAL	2	"NEUROD1,SSFA2"
TCGA.AA.A01Q.01A	2	182760713	182766471	5	-0.5696	SMALL-LOSS	FOCAL	1	SSFA2
TCGA.AG.3909.01A	2	183582782	183604974	10	-0.5623	SMALL-LOSS	FOCAL	1	DNAJC10
TCGA.AA.3850	2	185176266	185199293	10	-0.64495	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	185224999	185362148	35	-0.81505	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	185376559	187268149	354	-1.09345	SMALL-LOSS	FOCAL	2	"FSIP2,ZNF804A"
TCGA.A6.2681	2	186627015	187085332	107	-1.1171	SMALL-LOSS	FOCAL	1	FSIP2
TCGA.AH.6549.01A	2	186669903	186697780	9	-0.9593	SMALL-LOSS	FOCAL	1	FSIP2
TCGA.EI.6883	2	186828832	186904256	24	-0.6286	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28H	2	186896503	187152663	51	-0.6729	SMALL-LOSS	FOCAL	0	None
TCGA.CK.6746	2	187058538	187085332	15	-0.9592	SMALL-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	2	187239619	189659648	142	-0.5496	SMALL-LOSS	FOCAL	8	"CALCRL,DIRC1,FAM171B,GULP1,ITGAV,TFPI,ZC3H15,ZSWIM2"
TCGA.AA.A00L.01A	2	187455017	187519319	15	-1.116	SMALL-LOSS	FOCAL	1	ITGAV
TCGA.AA.3544	2	187492963	187775380	58	-0.6609	SMALL-LOSS	FOCAL	3	"FAM171B,ITGAV,ZSWIM2"
TCGA.AA.3850	2	187882981	190009717	441	-0.70715	SMALL-LOSS	FOCAL	6	"CALCRL,COL3A1,COL5A2,DIRC1,GULP1,TFPI"
TCGA.AA.3939.01A	2	188225294	189921629	88	-0.5269	SMALL-LOSS	FOCAL	6	"CALCRL,COL3A1,COL5A2,DIRC1,GULP1,TFPI"
TCGA.AA.3930.01A	2	189849847	189870867	32	-0.6116	SMALL-LOSS	FOCAL	1	COL3A1
TCGA.A6.3808.01A	2	189849847	189943715	75	-0.831	SMALL-LOSS	FOCAL	2	"COL3A1,COL5A2"
TCGA.AG.3891.01A	2	189904011	189910474	6	-0.9135	SMALL-LOSS	FOCAL	1	COL5A2
TCGA.AA.3930.01A	2	189904011	189923118	18	-0.6016	SMALL-LOSS	FOCAL	1	COL5A2
TCGA.AG.3909.01A	2	190436400	190541378	10	-1.2598	SMALL-LOSS	FOCAL	3	"ANKAR,ASNSD1,SLC40A1"
TCGA.AG.4009.01A	2	190437534	190556949	11	-0.5485	SMALL-LOSS	FOCAL	3	"ANKAR,ASNSD1,SLC40A1"
TCGA.AA.3831	2	190602512	190694448	40	-0.571	SMALL-LOSS	FOCAL	4	"ANKAR,ORMDL1,OSGEPL1,PMS1"
TCGA.AG.3909.01A	2	190618916	190682725	10	-1.2589	SMALL-LOSS	FOCAL	3	"ORMDL1,OSGEPL1,PMS1"
TCGA.AA.A010.01A	2	191379170	191766626	17	-0.8806	SMALL-LOSS	FOCAL	3	"GLS,NAB1,TMEM194B"
TCGA.AA.A00N.01A	2	191859735	191865748	5	-0.9939	SMALL-LOSS	FOCAL	1	STAT1
TCGA.AG.3909.01A	2	191859735	191900850	17	-0.5925	SMALL-LOSS	FOCAL	2	"STAT1,STAT4"
TCGA.AA.A00N.01A	2	191897657	191903878	6	-0.9194	SMALL-LOSS	FOCAL	1	STAT4
TCGA.AA.A010.01A	2	192228834	192257749	10	-1.21	SMALL-LOSS	FOCAL	1	MYO1B
TCGA.AG.4009.01A	2	192247941	192279194	15	-0.7997	SMALL-LOSS	FOCAL	1	MYO1B
TCGA.AG.3909.01A	2	192250573	192267305	9	-0.7188	SMALL-LOSS	FOCAL	1	MYO1B
TCGA.CK.5914.01A	2	192256819	192550275	21	-0.6141	SMALL-LOSS	FOCAL	2	"MYO1B,NABP1"
TCGA.AA.3941	2	192492558	196263583	790	-0.9013	SMALL-LOSS	FOCAL	3	"NABP1,SDPR,TMEFF2"
TCGA.AG.3909.01A	2	192543316	192550275	6	-1.0654	SMALL-LOSS	FOCAL	1	NABP1
TCGA.AA.3850	2	192621415	192675924	13	-1.26155	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	192848684	196191120	672	-1.04095	SMALL-LOSS	FOCAL	1	TMEFF2
TCGA.AA.A00N.01A	2	193044263	196544829	5	-1.1858	SMALL-LOSS	FOCAL	2	"SLC39A10,TMEFF2"
TCGA.AG.A015.01A	2	193056579	196544829	3	-1.2234	SMALL-LOSS	FOCAL	2	"SLC39A10,TMEFF2"
TCGA.D5.5538	2	193588962	197741264	905	-0.588	SMALL-LOSS	FOCAL	8	"C2orf66,CCDC150,DNAH7,GTF3C3,HECW2,PGAP1,SLC39A10,STK17B"
TCGA.A6.6653	2	194458905	194558358	13	-0.5255	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	2	196673532	196840569	35	-0.8631	SMALL-LOSS	FOCAL	1	DNAH7
TCGA.AG.4009.01A	2	197008247	197027939	4	-0.5455	SMALL-LOSS	FOCAL	1	STK17B
TCGA.AG.A00C.01A	2	197106756	197183235	12	-0.5354	SMALL-LOSS	FOCAL	1	HECW2
TCGA.AA.3941	2	197225559	197293582	32	-0.7587	SMALL-LOSS	FOCAL	1	HECW2
TCGA.CK.5914.01A	2	197755494	197792225	12	-0.5738	SMALL-LOSS	FOCAL	1	PGAP1
TCGA.AG.3909.01A	2	197777569	197791153	4	-1.1009	SMALL-LOSS	FOCAL	1	PGAP1
TCGA.AA.A00N.01A	2	198285055	198650616	57	-0.9854	SMALL-LOSS	FOCAL	9	"BOLL,COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,RFTN2,SF3B1"
TCGA.AZ.4684.01A	2	198288511	198482477	35	-0.5591	SMALL-LOSS	FOCAL	7	"COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MOB4,RFTN2,SF3B1"
TCGA.AG.3909.01A	2	198324609	198646409	44	-0.5573	SMALL-LOSS	FOCAL	8	"BOLL,COQ10B,HSPD1,HSPE1,HSPE1-MOB4,MARS2,MOB4,RFTN2"
TCGA.AA.A010.01A	2	198540004	198641719	13	-1.2745	SMALL-LOSS	FOCAL	3	"BOLL,MARS2,RFTN2"
TCGA.AG.4009.01A	2	198570103	198646409	12	-0.7881	SMALL-LOSS	FOCAL	2	"BOLL,MARS2"
TCGA.AA.3941	2	198576141	200231046	451	-0.6983	SMALL-LOSS	FOCAL	3	"BOLL,PLCL1,SATB2"
TCGA.AA.3850	2	198576141	200236424	453	-0.80925	SMALL-LOSS	FOCAL	3	"BOLL,PLCL1,SATB2"
TCGA.AG.3906.01A	2	198641719	198650616	4	-0.699	SMALL-LOSS	FOCAL	1	BOLL
TCGA.AA.A00N.01A	2	200823929	201173717	6	-1.0742	SMALL-LOSS	FOCAL	2	"C2orf47,SPATS2L"
TCGA.AG.3909.01A	2	201357863	201371533	5	-1.2558	SMALL-LOSS	FOCAL	1	KCTD18
TCGA.CK.5914.01A	2	201357863	201371533	5	-0.8079	SMALL-LOSS	FOCAL	1	KCTD18
TCGA.AA.A010.01A	2	201492036	201541548	17	-0.7939	SMALL-LOSS	FOCAL	1	AOX1
TCGA.AA.A00N.01A	2	201531376	201541548	5	-0.5208	SMALL-LOSS	FOCAL	1	AOX1
TCGA.CK.5914.01A	2	201535336	201726386	24	-0.7768	SMALL-LOSS	FOCAL	3	"AOX1,BZW1,CLK1"
TCGA.AG.3909.01A	2	201677880	201741590	22	-0.9038	SMALL-LOSS	FOCAL	3	"BZW1,CLK1,PPIL3"
TCGA.AA.A00N.01A	2	201746076	201752236	4	-0.896	SMALL-LOSS	FOCAL	1	PPIL3
TCGA.AA.A010.01A	2	201881705	201950175	5	-0.8002	SMALL-LOSS	FOCAL	2	"FAM126B,NDUFB3"
TCGA.AA.A00N.01A	2	201887505	201950175	4	-0.7321	SMALL-LOSS	FOCAL	2	"FAM126B,NDUFB3"
TCGA.CK.5914.01A	2	201943554	202028509	12	-0.8902	SMALL-LOSS	FOCAL	2	"CFLAR,NDUFB3"
TCGA.AG.3909.01A	2	201994540	202028509	10	-1.0314	SMALL-LOSS	FOCAL	1	CFLAR
TCGA.AG.4009.01A	2	201994540	202028509	9	-1.3021	SMALL-LOSS	FOCAL	1	CFLAR
TCGA.AA.A01Q.01A	2	201997701	202028509	8	-0.5615	SMALL-LOSS	FOCAL	1	CFLAR
TCGA.AA.A010.01A	2	202028509	202173843	26	-0.5413	SMALL-LOSS	FOCAL	4	"ALS2CR12,CASP10,CASP8,CFLAR"
TCGA.AA.A00N.01A	2	202131132	202163892	12	-0.9999	SMALL-LOSS	FOCAL	2	"ALS2CR12,CASP8"
TCGA.AA.A01C.01A	2	202334629	202342300	5	-0.6687	SMALL-LOSS	FOCAL	1	STRADB
TCGA.AA.3941	2	202398131	202402531	5	-1.3055	SMALL-LOSS	FOCAL	1	ALS2CR11
TCGA.AA.A010.01A	2	202410205	202446766	7	-1.175	SMALL-LOSS	FOCAL	1	ALS2CR11
TCGA.CK.5914.01A	2	202466413	202524966	27	-0.645	SMALL-LOSS	FOCAL	3	"ALS2CR11,MPP4,TMEM237"
TCGA.AG.3909.01A	2	202488915	202505530	11	-1.2304	SMALL-LOSS	FOCAL	1	TMEM237
TCGA.AG.3909.01A	2	202507249	202519519	6	-0.6896	SMALL-LOSS	FOCAL	2	"MPP4,TMEM237"
TCGA.AA.A00N.01A	2	202899370	202902199	3	-1.2338	SMALL-LOSS	FOCAL	1	FZD7
TCGA.AG.3909.01A	2	203242144	203406987	10	-0.6228	SMALL-LOSS	FOCAL	1	BMPR2
TCGA.CK.5914.01A	2	203329485	203406987	9	-0.9333	SMALL-LOSS	FOCAL	1	BMPR2
TCGA.AA.A010.01A	2	203378405	203590925	16	-0.5869	SMALL-LOSS	FOCAL	2	"BMPR2,FAM117B"
TCGA.AG.4009.01A	2	203379570	203653502	20	-0.5746	SMALL-LOSS	FOCAL	3	"BMPR2,FAM117B,ICA1L"
TCGA.AA.A010.01A	2	203620214	203676394	9	-1.28	SMALL-LOSS	FOCAL	2	"FAM117B,ICA1L"
TCGA.A6.6653	2	203685273	203714972	7	-0.8475	SMALL-LOSS	FOCAL	1	ICA1L
TCGA.AG.3909.01A	2	203745525	203776079	12	-0.6598	SMALL-LOSS	FOCAL	1	WDR12
TCGA.AG.3909.01A	2	204053143	204116679	16	-0.7357	SMALL-LOSS	FOCAL	2	"CYP20A1,NBEAL1"
TCGA.CK.5914.01A	2	204058481	204081929	10	-0.5725	SMALL-LOSS	FOCAL	1	NBEAL1
TCGA.AA.3939.01A	2	204161442	204312633	16	-0.5816	SMALL-LOSS	FOCAL	3	"ABI2,CYP20A1,RAPH1"
TCGA.AG.3909.01A	2	204231590	204275955	7	-0.5471	SMALL-LOSS	FOCAL	1	ABI2
TCGA.EI.6508	2	204243758	204364720	21	-0.6761	SMALL-LOSS	FOCAL	2	"ABI2,RAPH1"
TCGA.AG.3906.01A	2	204304163	204312633	5	-0.6835	SMALL-LOSS	FOCAL	1	RAPH1
TCGA.AA.3850	2	204858223	204921510	22	-0.72645	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	204935741	204979610	13	-0.54625	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	2	205553498	205643247	24	-0.6624	SMALL-LOSS	FOCAL	1	PARD3B
TCGA.AG.3727	2	206246226	206395250	47	-0.8837	SMALL-LOSS	FOCAL	1	PARD3B
TCGA.AH.6549.01A	2	206631426	207309990	45	-0.9559	SMALL-LOSS	FOCAL	7	"ADAM23,EEF1B2,GPR1,INO80D,NDUFS1,NRP2,ZDBF2"
TCGA.AA.A00N.01A	2	206988854	207024647	17	-1.3045	SMALL-LOSS	FOCAL	2	"EEF1B2,NDUFS1"
TCGA.A6.3808.01A	2	207027405	207406739	14	-0.6908	SMALL-LOSS	FOCAL	4	"ADAM23,EEF1B2,GPR1,ZDBF2"
TCGA.AA.3850	2	208054035	208082650	10	-1.20185	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	208461591	208632966	16	-0.816	SMALL-LOSS	FOCAL	4	"CCNYL1,CREB1,FZD5,METTL21A"
TCGA.AG.3909.01A	2	208986350	208994117	4	-0.7719	SMALL-LOSS	FOCAL	2	"CRYGC,CRYGD"
TCGA.AG.3909.01A	2	209101757	209142214	13	-1.1191	SMALL-LOSS	FOCAL	2	"IDH1,PIKFYVE"
TCGA.AG.3909.01A	2	209214680	209219867	7	-0.9232	SMALL-LOSS	FOCAL	1	PIKFYVE
TCGA.CK.5914.01A	2	209214680	209219867	7	-0.6392	SMALL-LOSS	FOCAL	1	PIKFYVE
TCGA.AA.3850	2	209376352	213073734	1052	-0.64085	SMALL-LOSS	FOCAL	9	"ACADL,CPS1,ERBB4,KANSL1L,LANCL1,MAP2,MYL1,RPE,UNC80"
TCGA.AA.3941	2	209495632	213162347	1053	-0.5991	SMALL-LOSS	FOCAL	9	"ACADL,CPS1,ERBB4,KANSL1L,LANCL1,MAP2,MYL1,RPE,UNC80"
TCGA.G4.6317	2	210440530	210450865	4	-0.7585	SMALL-LOSS	FOCAL	1	MAP2
TCGA.AA.A00L.01A	2	210594865	210650750	6	-1.1797	SMALL-LOSS	FOCAL	2	"MAP2,UNC80"
TCGA.AG.3909.01A	2	210637741	210642020	3	-1.0257	SMALL-LOSS	FOCAL	1	UNC80
TCGA.AA.A00N.01A	2	210846861	210884366	12	-0.7274	SMALL-LOSS	FOCAL	2	"RPE,UNC80"
TCGA.AA.A00N.01A	2	211018181	211089848	13	-0.8454	SMALL-LOSS	FOCAL	2	"ACADL,KANSL1L"
TCGA.AA.3939.01A	2	211019268	211069258	6	-0.6339	SMALL-LOSS	FOCAL	2	"ACADL,KANSL1L"
TCGA.AA.A010.01A	2	211442100	211476800	17	-0.883	SMALL-LOSS	FOCAL	1	CPS1
TCGA.AA.3967.01A	2	212522420	212989435	15	-0.6711	SMALL-LOSS	FOCAL	1	ERBB4
TCGA.EI.6506	2	213187202	213190034	6	-0.9059	SMALL-LOSS	FOCAL	1	ERBB4
TCGA.G4.6628	2	213187202	213190034	6	-0.9499	SMALL-LOSS	FOCAL	1	ERBB4
TCGA.D5.5537	2	213187202	213192231	7	-0.6989	SMALL-LOSS	FOCAL	1	ERBB4
TCGA.EI.6883	2	213188012	213190034	5	-0.9158	SMALL-LOSS	FOCAL	1	ERBB4
TCGA.AA.3850	2	213193423	215928090	855	-0.56825	SMALL-LOSS	FOCAL	7	"ABCA12,BARD1,ERBB4,IKZF2,LOC100130451,SPAG16,VWC2L"
TCGA.G4.6626	2	213656186	213800365	59	-1.0243	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6513	2	213807629	213978525	77	-0.7043	SMALL-LOSS	FOCAL	1	IKZF2
TCGA.G5.6641	2	215001225	215145764	43	-0.7758	SMALL-LOSS	FOCAL	1	SPAG16
TCGA.SS.A7HO	2	215539169	215542672	3	-1.1127	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AATE	2	215710008	215716168	3	-0.7326	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	216002807	216200736	12	-0.6475	SMALL-LOSS	FOCAL	2	"ABCA12,ATIC"
TCGA.AA.3864	2	216037891	216061656	3	-1.0557	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	216283918	216299382	11	-1.0598	SMALL-LOSS	FOCAL	1	FN1
TCGA.AG.3611.01A	2	216283918	216300326	12	-0.6661	SMALL-LOSS	FOCAL	1	FN1
TCGA.AG.4009.01A	2	216288031	216299382	8	-0.7087	SMALL-LOSS	FOCAL	1	FN1
TCGA.G4.6322	2	216380910	217350090	385	-0.5683	SMALL-LOSS	FOCAL	6	"MARCH4,MREG,PECR,SMARCAL1,TMEM169,XRCC5"
TCGA.AA.3841	2	216624562	216627932	3	-1.0163	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	2	217015283	217018255	3	-1.1089	SMALL-LOSS	FOCAL	1	XRCC5
TCGA.G4.6317	2	217329183	218598948	565	-0.7605	SMALL-LOSS	FOCAL	5	"IGFBP2,IGFBP5,RPL37A,SMARCAL1,TNP1"
TCGA.AA.3530	2	218622887	218638175	10	-0.616	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	218625786	218638175	7	-0.8191	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	2	218629831	218638175	4	-1.1714	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	2	218635839	218638175	3	-1.1073	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	2	218646721	218656051	4	-0.9234	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	2	218672717	218762479	28	-0.7285	SMALL-LOSS	FOCAL	1	TNS1
TCGA.AG.A015.01A	2	218939796	218953937	4	-1.0676	SMALL-LOSS	FOCAL	1	RUFY4
TCGA.AA.3844	2	218951244	219007751	6	-0.542	SMALL-LOSS	FOCAL	2	"CXCR2,RUFY4"
TCGA.AA.A01Q.01A	2	219136072	219187949	11	-0.7795	SMALL-LOSS	FOCAL	2	"PNKD,TMBIM1"
TCGA.AG.A015.01A	2	219222698	219257663	18	-0.5746	SMALL-LOSS	FOCAL	2	"CATIP,SLC11A1"
TCGA.AA.A00L.01A	2	219258783	219268973	8	-0.8199	SMALL-LOSS	FOCAL	2	"CTDSP1,SLC11A1"
TCGA.AA.3509.01A	2	219320256	219414495	20	-0.638	SMALL-LOSS	FOCAL	1	USP37
TCGA.AZ.4684.01A	2	219320256	219414495	20	-0.5904	SMALL-LOSS	FOCAL	1	USP37
TCGA.AG.3882	2	219462483	219497927	4	-0.5662	SMALL-LOSS	FOCAL	1	PLCD4
TCGA.AA.A00L.01A	2	219549766	219566551	16	-0.7492	SMALL-LOSS	FOCAL	1	STK36
TCGA.AA.A010.01A	2	219688448	219824551	20	-0.8406	SMALL-LOSS	FOCAL	4	"CDK5R2,PRKAG3,WNT10A,WNT6"
TCGA.AG.4009.01A	2	219735702	219877971	19	-0.7675	SMALL-LOSS	FOCAL	6	"CCDC108,CDK5R2,CRYBA2,FEV,WNT10A,WNT6"
TCGA.AA.A00N.01A	2	219735702	219878542	30	-0.6624	SMALL-LOSS	FOCAL	6	"CCDC108,CDK5R2,CRYBA2,FEV,WNT10A,WNT6"
TCGA.A6.3808.01A	2	219826102	219867624	11	-1.2967	SMALL-LOSS	FOCAL	4	"CCDC108,CDK5R2,CRYBA2,FEV"
TCGA.AA.3930.01A	2	219846348	219855537	5	-0.9057	SMALL-LOSS	FOCAL	2	"CRYBA2,FEV"
TCGA.AA.A010.01A	2	219857688	219903601	32	-0.5954	SMALL-LOSS	FOCAL	2	"CCDC108,CRYBA2"
TCGA.AG.3891.01A	2	219873717	219883667	7	-0.7267	SMALL-LOSS	FOCAL	1	CCDC108
TCGA.AA.3930.01A	2	219873717	219884177	7	-0.5827	SMALL-LOSS	FOCAL	1	CCDC108
TCGA.AA.A00N.01A	2	219900052	220043108	34	-0.813	SMALL-LOSS	FOCAL	6	"CCDC108,CNPPD1,FAM134A,IHH,NHEJ1,SLC23A3"
TCGA.AA.A010.01A	2	219959947	220107470	79	-0.9074	SMALL-LOSS	FOCAL	9	"ABCB6,ANKZF1,ATG9A,CNPPD1,FAM134A,GLB1L,NHEJ1,SLC23A3,ZFAND2B"
TCGA.AG.4009.01A	2	220028913	220038799	10	-0.5944	SMALL-LOSS	FOCAL	2	"CNPPD1,SLC23A3"
TCGA.AF.3914.01A	2	220038053	220080692	28	-1.2897	SMALL-LOSS	FOCAL	4	"ABCB6,CNPPD1,FAM134A,ZFAND2B"
TCGA.AG.4009.01A	2	220039489	220072936	13	-1.1396	SMALL-LOSS	FOCAL	3	"CNPPD1,FAM134A,ZFAND2B"
TCGA.AA.A00L.01A	2	220043607	220077061	17	-0.714	SMALL-LOSS	FOCAL	3	"ABCB6,FAM134A,ZFAND2B"
TCGA.CK.5914.01A	2	220071995	220116723	59	-0.7312	SMALL-LOSS	FOCAL	7	"ABCB6,ANKZF1,ATG9A,GLB1L,STK16,TUBA4A,ZFAND2B"
TCGA.AG.4009.01A	2	220073654	220099506	33	-0.6598	SMALL-LOSS	FOCAL	4	"ABCB6,ANKZF1,ATG9A,ZFAND2B"
TCGA.AF.3914.01A	2	220081047	220110675	36	-0.6002	SMALL-LOSS	FOCAL	5	"ABCB6,ANKZF1,ATG9A,GLB1L,STK16"
TCGA.AA.A01C.01A	2	220090102	220110675	25	-1.0564	SMALL-LOSS	FOCAL	4	"ANKZF1,ATG9A,GLB1L,STK16"
TCGA.AA.A01Q.01A	2	220101777	220107470	9	-0.9292	SMALL-LOSS	FOCAL	1	GLB1L
TCGA.AA.A01Q.01A	2	220144501	220172440	27	-0.8195	SMALL-LOSS	FOCAL	2	"DNAJB2,PTPRN"
TCGA.AG.4009.01A	2	220149316	220159667	7	-0.6954	SMALL-LOSS	FOCAL	2	"DNAJB2,PTPRN"
TCGA.AF.3914.01A	2	220155494	220286015	33	-0.5677	SMALL-LOSS	FOCAL	4	"DES,DNPEP,PTPRN,RESP18"
TCGA.AG.4009.01A	2	220160898	220309322	34	-1.179	SMALL-LOSS	FOCAL	5	"DES,DNPEP,PTPRN,RESP18,SPEG"
TCGA.AG.A01W.01A	2	220170805	220182027	12	-1.0146	SMALL-LOSS	FOCAL	1	PTPRN
TCGA.AG.A01W.01A	2	220209597	220213715	7	-0.7058	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	2	220239525	220432409	103	-0.5584	SMALL-LOSS	FOCAL	9	"ASIC4,CHPF,DES,DNPEP,GMPPA,LOC100996693,OBSL1,SPEG,TMEM198"
TCGA.AA.A01Q.01A	2	220283174	220290620	8	-0.6888	SMALL-LOSS	FOCAL	1	DES
TCGA.AA.A010.01A	2	220284760	220330706	19	-1.0108	SMALL-LOSS	FOCAL	2	"DES,SPEG"
TCGA.AG.3584	2	220320043	220507879	37	-0.5292	SMALL-LOSS	FOCAL	10	"ASIC4,CHPF,GMPPA,INHA,LOC100996693,OBSL1,SLC4A3,SPEG,STK11IP,TMEM198"
TCGA.AA.A01Q.01A	2	220364620	220420700	27	-0.8108	SMALL-LOSS	FOCAL	5	"ASIC4,CHPF,GMPPA,OBSL1,TMEM198"
TCGA.AG.A015.01A	2	220366572	220397547	10	-0.5964	SMALL-LOSS	FOCAL	2	"ASIC4,GMPPA"
TCGA.AG.4009.01A	2	220399852	220439459	27	-0.8561	SMALL-LOSS	FOCAL	5	"ASIC4,CHPF,INHA,OBSL1,TMEM198"
TCGA.AF.3914.01A	2	220427077	220439459	9	-0.995	SMALL-LOSS	FOCAL	2	"INHA,OBSL1"
TCGA.AA.3681	2	220451900	222800745	910	-0.5381	SMALL-LOSS	FOCAL	3	"EPHA4,SLC4A3,STK11IP"
TCGA.AG.A01L.01A	2	220462543	220473782	11	-0.6216	SMALL-LOSS	FOCAL	1	STK11IP
TCGA.AG.A015.01A	2	220462543	220476289	13	-1.0857	SMALL-LOSS	FOCAL	1	STK11IP
TCGA.AF.3914.01A	2	220493100	220503406	16	-0.6033	SMALL-LOSS	FOCAL	1	SLC4A3
TCGA.AA.A00A.01A	2	220501352	220505125	6	-0.8908	SMALL-LOSS	FOCAL	1	SLC4A3
TCGA.D5.5538	2	220535981	222174273	663	-0.6206	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	2	223158362	223160196	3	-1.0553	SMALL-LOSS	FOCAL	1	PAX3
TCGA.G4.6322	2	225695098	225955216	129	-0.8237	SMALL-LOSS	FOCAL	1	DOCK10
TCGA.AG.3891.01A	2	226378049	227663084	8	-0.5899	SMALL-LOSS	FOCAL	2	"IRS1,NYAP2"
TCGA.AG.3909.01A	2	226446620	227663084	7	-0.5574	SMALL-LOSS	FOCAL	2	"IRS1,NYAP2"
TCGA.AA.3544	2	226998618	228040419	321	-0.7469	SMALL-LOSS	FOCAL	4	"COL4A3,COL4A4,IRS1,RHBDD1"
TCGA.RU.A8FL	2	227911660	227914560	4	-0.6143	SMALL-LOSS	FOCAL	1	COL4A4
TCGA.AG.3891.01A	2	227927194	227966160	10	-0.5796	SMALL-LOSS	FOCAL	1	COL4A4
TCGA.AA.A00N.01A	2	228207402	228221675	6	-0.8097	SMALL-LOSS	FOCAL	1	MFF
TCGA.AA.3867	2	229926701	229929827	5	-1.1609	SMALL-LOSS	FOCAL	1	PID1
TCGA.AA.A010.01A	2	230632222	230643108	7	-0.8108	SMALL-LOSS	FOCAL	1	TRIP12
TCGA.AG.3909.01A	2	230701517	230725075	5	-0.5223	SMALL-LOSS	FOCAL	1	TRIP12
TCGA.AG.A01W.01A	2	230811669	230821790	7	-0.5214	SMALL-LOSS	FOCAL	1	FBXO36
TCGA.AA.A00Q.01A	2	231037521	231077037	12	-0.8667	SMALL-LOSS	FOCAL	1	SP110
TCGA.AA.A00A.01A	2	231042206	231077037	10	-0.9254	SMALL-LOSS	FOCAL	1	SP110
TCGA.AA.A010.01A	2	231106070	231149003	13	-0.5467	SMALL-LOSS	FOCAL	1	SP140
TCGA.DM.A28M.01A	2	231162055	231176146	5	-1.0619	SMALL-LOSS	FOCAL	1	SP140
TCGA.AG.3909.01A	2	231162055	231177250	6	-0.7169	SMALL-LOSS	FOCAL	1	SP140
TCGA.AA.A00N.01A	2	231248181	231308841	17	-0.6562	SMALL-LOSS	FOCAL	2	"SP100,SP140L"
TCGA.RU.A8FL	2	231526525	231528908	3	-1.0106	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	2	231682450	231927218	11	-0.634	SMALL-LOSS	FOCAL	6	"C2orf72,CAB39,GPR55,ITM2C,PSMD1,SPATA3"
TCGA.AA.A010.01A	2	231738085	231973244	29	-0.753	SMALL-LOSS	FOCAL	6	"C2orf72,GPR55,HTR2B,ITM2C,PSMD1,SPATA3"
TCGA.AA.A00N.01A	2	232070881	232123640	10	-0.7819	SMALL-LOSS	FOCAL	1	ARMC9
TCGA.AA.A00N.01A	2	232262445	232665782	45	-1.1543	SMALL-LOSS	FOCAL	7	"B3GNT7,C2orf57,COPS7B,NCL,NMUR1,PDE6D,PTMA"
TCGA.AA.A00Q.01A	2	232319852	232327860	13	-1.0367	SMALL-LOSS	FOCAL	1	NCL
TCGA.AG.3909.01A	2	232320674	232576003	18	-0.806	SMALL-LOSS	FOCAL	4	"C2orf57,NCL,NMUR1,PTMA"
TCGA.AG.4009.01A	2	232389775	232577970	8	-0.7554	SMALL-LOSS	FOCAL	3	"C2orf57,NMUR1,PTMA"
TCGA.AA.A010.01A	2	232457616	232597614	12	-1.2501	SMALL-LOSS	FOCAL	3	"C2orf57,PDE6D,PTMA"
TCGA.AF.3914.01A	2	232576545	232577970	4	-1.1188	SMALL-LOSS	FOCAL	1	PTMA
TCGA.CK.5914.01A	2	232646463	232665782	8	-0.5227	SMALL-LOSS	FOCAL	1	COPS7B
TCGA.AA.A010.01A	2	233205382	233245922	7	-0.6995	SMALL-LOSS	FOCAL	2	"ALPP,DIS3L2"
TCGA.AG.4009.01A	2	233243450	233393530	30	-0.8155	SMALL-LOSS	FOCAL	6	"ALPI,ALPP,ALPPL2,CHRND,ECEL1,PRSS56"
TCGA.AA.A010.01A	2	233271540	233272930	5	-1.3144	SMALL-LOSS	FOCAL	1	ALPPL2
TCGA.AA.A01Q.01A	2	233344811	233349456	10	-1.241	SMALL-LOSS	FOCAL	1	ECEL1
TCGA.AF.3914.01A	2	233344811	233392944	13	-1.22	SMALL-LOSS	FOCAL	3	"CHRND,ECEL1,PRSS56"
TCGA.AA.A00L.01A	2	233344811	233396011	17	-0.7331	SMALL-LOSS	FOCAL	3	"CHRND,ECEL1,PRSS56"
TCGA.AA.A01Q.01A	2	233350587	233398673	9	-0.5221	SMALL-LOSS	FOCAL	3	"CHRND,ECEL1,PRSS56"
TCGA.AA.A010.01A	2	233390851	233392944	4	-0.8047	SMALL-LOSS	FOCAL	1	CHRND
TCGA.AA.A01Q.01A	2	233412913	233414425	3	-0.8924	SMALL-LOSS	FOCAL	1	TIGD1
TCGA.AG.4009.01A	2	233746839	233785002	9	-0.6679	SMALL-LOSS	FOCAL	1	NGEF
TCGA.AA.A010.01A	2	234231541	234240223	5	-0.6088	SMALL-LOSS	FOCAL	1	SAG
TCGA.AA.A00N.01A	2	234249016	234418651	47	-0.8002	SMALL-LOSS	FOCAL	3	"DGKD,SAG,USP40"
TCGA.AA.A01Q.01A	2	234342978	234377020	25	-0.5954	SMALL-LOSS	FOCAL	1	DGKD
TCGA.AG.3909.01A	2	234345972	234358577	8	-0.9671	SMALL-LOSS	FOCAL	1	DGKD
TCGA.CK.5914.01A	2	234360562	234365527	4	-1.0004	SMALL-LOSS	FOCAL	1	DGKD
TCGA.AG.3909.01A	2	234366883	234377020	8	-0.994	SMALL-LOSS	FOCAL	1	DGKD
TCGA.AA.A00L.01A	2	234526315	234637721	11	-0.8248	SMALL-LOSS	FOCAL	7	"UGT1A10,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.A6.6653	2	234607004	234650603	19	-0.6112	SMALL-LOSS	FOCAL	8	"UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.T9.A92H	2	234645185	234662262	6	-0.7374	SMALL-LOSS	FOCAL	9	"DNAJB3,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.AA.A00N.01A	2	234740786	234761158	10	-0.6877	SMALL-LOSS	FOCAL	2	"HJURP,MROH2A"
TCGA.AA.A00N.01A	2	234862524	234925886	17	-1.0188	SMALL-LOSS	FOCAL	1	TRPM8
TCGA.AA.A00L.01A	2	234871872	234904920	10	-0.8204	SMALL-LOSS	FOCAL	1	TRPM8
TCGA.AA.3844	2	234948683	234954768	7	-1.0758	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3885	2	235501121	236066038	248	-0.532	SMALL-LOSS	FOCAL	1	SH3BP4
TCGA.5M.AAT5	2	235707171	235710512	4	-0.7572	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6460	2	236401203	236422412	8	-0.7585	SMALL-LOSS	FOCAL	1	AGAP1
TCGA.BM.6198	2	236436554	236456677	10	-0.64535	SMALL-LOSS	FOCAL	1	AGAP1
TCGA.BM.6198	2	236514824	236541537	11	-0.52595	SMALL-LOSS	FOCAL	1	AGAP1
TCGA.DM.A1D4	2	236560229	236692237	40	-0.7615	SMALL-LOSS	FOCAL	1	AGAP1
TCGA.CM.6675	2	236766645	236890751	47	-1.2329	SMALL-LOSS	FOCAL	1	AGAP1
TCGA.CM.6165.01A	2	237076053	237076443	2	-0.7886	SMALL-LOSS	FOCAL	1	GBX2
TCGA.F4.6460	2	237360493	237535730	50	-0.9146	SMALL-LOSS	FOCAL	2	"ACKR3,IQCA1"
TCGA.AA.A00N.01A	2	237395406	238006244	17	-0.9605	SMALL-LOSS	FOCAL	3	"ACKR3,COPS8,IQCA1"
TCGA.AA.3693	2	237433732	237817719	182	-1.0126	SMALL-LOSS	FOCAL	1	ACKR3
TCGA.F4.6460	2	237548072	237627045	34	-1.0076	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	2	237801775	237804208	9	-0.76685	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	2	237801775	237804208	9	-0.728	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	2	238337733	238419585	6	-0.5149	SMALL-LOSS	FOCAL	1	MLPH
TCGA.AG.A01W.01A	2	238503570	238515985	7	-0.5756	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3543	2	238546571	238647467	50	-1.0784	SMALL-LOSS	FOCAL	1	LRRFIP1
TCGA.AA.A00N.01A	2	238622809	238636447	6	-0.9435	SMALL-LOSS	FOCAL	1	LRRFIP1
TCGA.AA.A00N.01A	2	238678509	239082145	70	-0.5633	SMALL-LOSS	FOCAL	9	"ESPNL,FAM132B,ILKAP,KLHL30,LRRFIP1,RAMP1,RBM44,SCLY,UBE2F"
TCGA.AA.3967.01A	2	238680687	238785814	17	-0.5184	SMALL-LOSS	FOCAL	3	"LRRFIP1,RAMP1,RBM44"
TCGA.AA.3930.01A	2	239002457	239059433	20	-0.5904	SMALL-LOSS	FOCAL	3	"ESPNL,KLHL30,SCLY"
TCGA.AA.A00N.01A	2	239090669	239159170	18	-1.2266	SMALL-LOSS	FOCAL	3	"HES6,ILKAP,PER2"
TCGA.AA.3509.01A	2	239177488	239264587	20	-0.8109	SMALL-LOSS	FOCAL	2	"PER2,TRAF3IP1"
TCGA.DM.A28M.01A	2	239234418	239264587	12	-0.7681	SMALL-LOSS	FOCAL	1	TRAF3IP1
TCGA.DM.A28M.01A	2	240946662	241065933	14	-0.6191	SMALL-LOSS	FOCAL	4	"NDUFA10,OR6B2,OR6B3,PRR21"
TCGA.AG.4009.01A	2	241492324	241514869	7	-0.8807	SMALL-LOSS	FOCAL	3	"ANKMY1,DUSP28,RNPEPL1"
TCGA.AA.A01Q.01A	2	241514399	241537991	13	-1.3142	SMALL-LOSS	FOCAL	2	"CAPN10,RNPEPL1"
TCGA.AA.A010.01A	2	241526317	241631313	23	-0.9682	SMALL-LOSS	FOCAL	4	"AQP12A,AQP12B,CAPN10,GPR35"
TCGA.AG.3909.01A	2	242021646	242051608	11	-1.1137	SMALL-LOSS	FOCAL	3	"MTERF4,PASK,SNED1"
TCGA.AA.A01Q.01A	2	242035385	242263611	76	-1.1357	SMALL-LOSS	FOCAL	6	"ANO7,HDLBP,MTERF4,PASK,PPP1R7,SEPT2"
TCGA.A6.6653	2	242153670	242208791	17	-0.9031	SMALL-LOSS	FOCAL	2	"ANO7,HDLBP"
TCGA.AG.4009.01A	2	242179308	242312501	25	-0.5204	SMALL-LOSS	FOCAL	3	"FARP2,HDLBP,SEPT2"
TCGA.AA.3509.01A	2	242194419	242374325	29	-0.5331	SMALL-LOSS	FOCAL	3	"FARP2,HDLBP,SEPT2"
TCGA.CK.5914.01A	2	242202074	242287481	14	-0.551	SMALL-LOSS	FOCAL	2	"HDLBP,SEPT2"
TCGA.AA.A00N.01A	2	242202074	242289480	15	-1.237	SMALL-LOSS	FOCAL	2	"HDLBP,SEPT2"
TCGA.AA.A01Q.01A	2	242265396	242396134	22	-0.574	SMALL-LOSS	FOCAL	2	"FARP2,SEPT2"
TCGA.AA.A01Q.01A	2	242401895	242684087	51	-1.164	SMALL-LOSS	FOCAL	8	"ATG4B,BOK,D2HGDH,DTYMK,FARP2,ING5,STK25,THAP4"
TCGA.AA.A00N.01A	2	242439511	242615495	30	-0.6042	SMALL-LOSS	FOCAL	5	"ATG4B,BOK,DTYMK,STK25,THAP4"
TCGA.AA.A010.01A	2	242556752	242641412	23	-1.2529	SMALL-LOSS	FOCAL	3	"ATG4B,DTYMK,THAP4"
TCGA.CK.5914.01A	2	242556752	242664346	27	-0.5733	SMALL-LOSS	FOCAL	4	"ATG4B,DTYMK,ING5,THAP4"
TCGA.AG.3909.01A	2	242617815	242690613	15	-0.8805	SMALL-LOSS	FOCAL	3	"D2HGDH,DTYMK,ING5"
TCGA.AF.3914.01A	2	242644024	242680386	8	-0.6545	SMALL-LOSS	FOCAL	2	"D2HGDH,ING5"
TCGA.AG.4009.01A	2	242644024	242680386	7	-1.23	SMALL-LOSS	FOCAL	2	"D2HGDH,ING5"
TCGA.AA.A010.01A	2	242674603	242836313	31	-0.7467	SMALL-LOSS	FOCAL	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AA.A00N.01A	2	242674603	242842428	34	-0.5304	SMALL-LOSS	FOCAL	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.AA.A01Q.01A	2	242688190	242800876	18	-0.5907	SMALL-LOSS	FOCAL	4	"D2HGDH,GAL3ST2,NEU4,PDCD1"
TCGA.AG.3891.01A	2	242707094	242813848	11	-0.5509	SMALL-LOSS	FOCAL	5	"D2HGDH,GAL3ST2,NEU4,PDCD1,RTP5"
TCGA.D5.5539	2	242917305	243007367	22	-0.849	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3519	3	70894	506880	275	-0.7949	SMALL-LOSS	FOCAL	1	CHL1
TCGA.AA.3941	3	70894	712550	323	-0.5336	SMALL-LOSS	FOCAL	1	CHL1
TCGA.AA.3850	3	70894	718312	325	-0.68775	SMALL-LOSS	FOCAL	1	CHL1
TCGA.AZ.4614	3	70894	1781802	904	-0.8909	SMALL-LOSS	FOCAL	2	"CHL1,CNTN6"
TCGA.AA.3979	3	70894	2400966	1237	-1.1585	SMALL-LOSS	FOCAL	3	"CHL1,CNTN4,CNTN6"
TCGA.AA.3972	3	70894	3261789	1739	-1.0179	SMALL-LOSS	FOCAL	6	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,TRNT1"
TCGA.CM.5862	3	70894	4319796	2367	-0.9471	SMALL-LOSS	FOCAL	7	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.G4.6310	3	310762	354494	36	-0.5469	SMALL-LOSS	FOCAL	1	CHL1
TCGA.AA.A00D.01A	3	361417	3144330	71	-0.6288	SMALL-LOSS	FOCAL	4	"CHL1,CNTN4,CNTN6,IL5RA"
TCGA.AA.3930.01A	3	361417	4711296	133	-0.6157	SMALL-LOSS	FOCAL	10	"CHL1,CNTN4,CNTN6,CRBN,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3811	3	458657	4210503	2073	-0.5618	SMALL-LOSS	FOCAL	6	"CNTN4,CNTN6,CRBN,IL5RA,LRRN1,TRNT1"
TCGA.AA.3867	3	680600	728161	16	-0.8512	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	3	728161	1157508	174	-0.74015	SMALL-LOSS	FOCAL	1	CNTN6
TCGA.AA.3941	3	728161	2368018	892	-0.6719	SMALL-LOSS	FOCAL	2	"CNTN4,CNTN6"
TCGA.A6.6653	3	857457	858547	3	-0.9102	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6163	3	970949	1034996	28	-1.0476	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	3	996717	1007442	5	-0.8484	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	3	1400095	2378330	557	-0.62395	SMALL-LOSS	FOCAL	2	"CNTN4,CNTN6"
TCGA.AG.A02N	3	1636313	2665742	523	-0.8025	SMALL-LOSS	FOCAL	1	CNTN4
TCGA.A6.5660	3	2229239	2259928	10	-0.9403	SMALL-LOSS	FOCAL	1	CNTN4
TCGA.A6.5667	3	2860238	3050951	111	-0.759	SMALL-LOSS	FOCAL	1	CNTN4
TCGA.CK.5914.01A	3	2942317	3029977	4	-0.7839	SMALL-LOSS	FOCAL	1	CNTN4
TCGA.AA.A00N.01A	3	3144330	3216810	20	-0.9882	SMALL-LOSS	FOCAL	3	"CRBN,IL5RA,TRNT1"
TCGA.AG.3909.01A	3	3146546	3216810	18	-0.6443	SMALL-LOSS	FOCAL	3	"CRBN,IL5RA,TRNT1"
TCGA.CK.5914.01A	3	3170685	3189550	8	-1.0148	SMALL-LOSS	FOCAL	1	TRNT1
TCGA.AA.A00D.01A	3	3221242	4494513	17	-0.6041	SMALL-LOSS	FOCAL	4	"CRBN,LRRN1,SETMAR,SUMF1"
TCGA.F5.6863	3	3304981	3621689	225	-0.7028	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6601	3	3797186	3803488	3	-0.9325	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	3	3806697	4319796	251	-0.59385	SMALL-LOSS	FOCAL	1	LRRN1
TCGA.AG.3898	3	3818464	3972227	79	-0.6764	SMALL-LOSS	FOCAL	1	LRRN1
TCGA.DM.A28F	3	3996834	4239846	123	-0.661	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	3	4096643	4103600	4	-0.995	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3833	3	4096643	4104177	6	-0.806	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	3	4133729	4301094	67	-0.6781	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28H	3	4222975	4312734	36	-0.6481	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3732	3	4293383	4461697	83	-0.6214	SMALL-LOSS	FOCAL	2	"SETMAR,SUMF1"
TCGA.EI.6513	3	4312823	4432115	63	-0.7837	SMALL-LOSS	FOCAL	2	"SETMAR,SUMF1"
TCGA.AZ.4682	3	4329654	4386593	26	-0.881	SMALL-LOSS	FOCAL	1	SETMAR
TCGA.AG.4009.01A	3	4354551	4358155	3	-0.743	SMALL-LOSS	FOCAL	1	SETMAR
TCGA.AA.3982	3	4601518	4603591	5	-0.8415	SMALL-LOSS	FOCAL	1	ITPR1
TCGA.AA.3864	3	4602497	4603591	4	-0.8106	SMALL-LOSS	FOCAL	1	ITPR1
TCGA.AG.3732	3	4602846	4647351	30	-0.5595	SMALL-LOSS	FOCAL	1	ITPR1
TCGA.AG.A016.01A	3	4709014	4725026	10	-0.593	SMALL-LOSS	FOCAL	1	ITPR1
TCGA.AA.A00N.01A	3	4878436	6903075	26	-0.5671	SMALL-LOSS	FOCAL	5	"ARL8B,BHLHE40,EDEM1,GRM7,ITPR1"
TCGA.AF.3914.01A	3	5215638	5244614	7	-0.6844	SMALL-LOSS	FOCAL	2	"ARL8B,EDEM1"
TCGA.AA.A00D.01A	3	5246705	9290535	72	-0.6747	SMALL-LOSS	FOCAL	8	"CAV3,EDEM1,GRM7,LMCD1,OXTR,RAD18,SRGAP3,SSUH2"
TCGA.DY.A1DC	3	5254684	6142078	475	-0.6103	SMALL-LOSS	FOCAL	1	EDEM1
TCGA.AA.3941	3	5444069	5460813	6	-0.5267	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	3	5867226	6154424	158	-0.7257	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A71X	3	5950920	5953418	3	-1.0198	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	3	6194026	6207030	12	-1.243	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	3	6206900	8475597	1171	-0.5651	SMALL-LOSS	FOCAL	1	GRM7
TCGA.AA.3496	3	6509991	7046015	232	-0.7342	SMALL-LOSS	FOCAL	1	GRM7
TCGA.AZ.6608	3	7086756	7091500	3	-1.0293	SMALL-LOSS	FOCAL	1	GRM7
TCGA.AG.A00C.01A	3	7781967	8675304	15	-0.5265	SMALL-LOSS	FOCAL	3	"GRM7,LMCD1,SSUH2"
TCGA.AA.3982	3	7858149	7862151	9	-0.6859	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	3	8421331	8647077	134	-0.5421	SMALL-LOSS	FOCAL	1	LMCD1
TCGA.AA.3867	3	8695286	8697371	3	-1.028	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	3	8745084	8781330	20	-0.7991	SMALL-LOSS	FOCAL	1	CAV3
TCGA.G4.6303	3	8885670	8910223	23	-0.5545	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	9406712	9416148	4	-0.5718	SMALL-LOSS	FOCAL	1	THUMPD3
TCGA.CK.5914.01A	3	9406712	9426161	9	-0.6407	SMALL-LOSS	FOCAL	1	THUMPD3
TCGA.AA.A00N.01A	3	9412727	9426161	7	-0.9598	SMALL-LOSS	FOCAL	1	THUMPD3
TCGA.AA.A010.01A	3	9470561	9478457	7	-0.6688	SMALL-LOSS	FOCAL	1	SETD5
TCGA.AA.A010.01A	3	9719628	9782944	31	-0.6014	SMALL-LOSS	FOCAL	3	"BRPF1,CPNE9,MTMR14"
TCGA.AF.3914.01A	3	9739368	9747638	5	-1.0191	SMALL-LOSS	FOCAL	2	"CPNE9,MTMR14"
TCGA.AA.A00N.01A	3	9739368	9784641	24	-0.8242	SMALL-LOSS	FOCAL	3	"BRPF1,CPNE9,MTMR14"
TCGA.AG.3909.01A	3	9743447	9784641	22	-0.7508	SMALL-LOSS	FOCAL	3	"BRPF1,CPNE9,MTMR14"
TCGA.CK.5914.01A	3	9746212	9854590	55	-0.6068	SMALL-LOSS	FOCAL	8	"ARPC4,ARPC4-TTLL3,BRPF1,CAMK1,CPNE9,OGG1,TADA3,TTLL3"
TCGA.AG.3909.01A	3	9800819	9847800	18	-0.9145	SMALL-LOSS	FOCAL	5	"ARPC4,ARPC4-TTLL3,CAMK1,OGG1,TADA3"
TCGA.AA.A00N.01A	3	9800819	9860459	24	-0.7868	SMALL-LOSS	FOCAL	6	"ARPC4,ARPC4-TTLL3,CAMK1,OGG1,TADA3,TTLL3"
TCGA.AG.3909.01A	3	9920047	10005703	40	-0.8063	SMALL-LOSS	FOCAL	7	"CIDEC,CRELD1,EMC3,IL17RC,IL17RE,JAGN1,PRRT3"
TCGA.AA.A010.01A	3	9934592	10012214	41	-0.7323	SMALL-LOSS	FOCAL	6	"CRELD1,EMC3,IL17RC,IL17RE,JAGN1,PRRT3"
TCGA.AA.A00N.01A	3	9945008	10101926	64	-0.7972	SMALL-LOSS	FOCAL	7	"CRELD1,EMC3,FANCD2,IL17RC,IL17RE,LOC401052,PRRT3"
TCGA.AG.4009.01A	3	10101926	10122744	13	-0.818	SMALL-LOSS	FOCAL	1	FANCD2
TCGA.AG.3909.01A	3	10101926	10191464	31	-0.6313	SMALL-LOSS	FOCAL	4	"BRK1,FANCD2,FANCD2OS,VHL"
TCGA.AA.A01Q.01A	3	10107501	10116187	5	-0.6291	SMALL-LOSS	FOCAL	1	FANCD2
TCGA.AA.A00N.01A	3	10119714	10191464	21	-0.8968	SMALL-LOSS	FOCAL	4	"BRK1,FANCD2,FANCD2OS,VHL"
TCGA.AG.A015.01A	3	10140352	10280432	18	-0.6023	SMALL-LOSS	FOCAL	5	"BRK1,FANCD2,FANCD2OS,IRAK2,VHL"
TCGA.EI.6508	3	10187013	10241874	15	-0.7895	SMALL-LOSS	FOCAL	2	"IRAK2,VHL"
TCGA.AG.3909.01A	3	10276101	10301804	5	-0.5917	SMALL-LOSS	FOCAL	2	"IRAK2,TATDN2"
TCGA.AG.3909.01A	3	10354222	10387663	13	-0.5391	SMALL-LOSS	FOCAL	2	"ATP2B2,SEC13"
TCGA.CK.5914.01A	3	10359659	10384385	10	-0.8411	SMALL-LOSS	FOCAL	2	"ATP2B2,SEC13"
TCGA.AF.A56K	3	10377311	10398904	6	-1.0263	SMALL-LOSS	FOCAL	1	ATP2B2
TCGA.G4.6295	3	11040861	11041605	3	-0.9426	SMALL-LOSS	FOCAL	1	SLC6A1
TCGA.CM.5341	3	11100663	11960849	280	-0.6499	SMALL-LOSS	FOCAL	4	"ATG7,HRH1,TAMM41,VGLL4"
TCGA.F4.6570	3	11412603	11491304	23	-0.5953	SMALL-LOSS	FOCAL	1	ATG7
TCGA.AA.3848	3	11594929	11674451	46	-0.5668	SMALL-LOSS	FOCAL	2	"ATG7,VGLL4"
TCGA.AG.3891.01A	3	11609983	11684852	4	-0.7176	SMALL-LOSS	FOCAL	1	VGLL4
TCGA.EI.6514	3	12093404	12629964	180	-1.3186	SMALL-LOSS	FOCAL	7	"MKRN2,MKRN2OS,PPARG,RAF1,SYN2,TIMP4,TSEN2"
TCGA.AA.3982	3	12118343	12144981	3	-1.0692	SMALL-LOSS	FOCAL	1	SYN2
TCGA.AA.3977	3	12118343	12145348	4	-0.7721	SMALL-LOSS	FOCAL	1	SYN2
TCGA.AA.A00N.01A	3	12182081	12211207	14	-0.886	SMALL-LOSS	FOCAL	2	"SYN2,TIMP4"
TCGA.AA.A010.01A	3	12780008	12791196	5	-0.8868	SMALL-LOSS	FOCAL	1	TMEM40
TCGA.AG.3909.01A	3	12854437	12976959	23	-0.5192	SMALL-LOSS	FOCAL	3	"CAND2,IQSEC1,RPL32"
TCGA.AA.A01Q.01A	3	12877541	12976959	15	-0.9134	SMALL-LOSS	FOCAL	2	"IQSEC1,RPL32"
TCGA.CK.5914.01A	3	12944201	13114416	14	-0.7846	SMALL-LOSS	FOCAL	1	IQSEC1
TCGA.AA.A00N.01A	3	14201186	14239479	12	-0.9397	SMALL-LOSS	FOCAL	2	"LSM3,XPC"
TCGA.AG.3909.01A	3	14208613	14239479	9	-0.7575	SMALL-LOSS	FOCAL	2	"LSM3,XPC"
TCGA.AA.3844	3	14263205	14264679	4	-0.7297	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	3	14489053	14526348	10	-0.7318	SMALL-LOSS	FOCAL	1	SLC6A6
TCGA.AA.A01F.01A	3	14798826	14802960	3	-1.0121	SMALL-LOSS	FOCAL	1	C3orf20
TCGA.DC.4749	3	14949898	15152783	45	-1.3181	SMALL-LOSS	FOCAL	4	"FGD5,MRPS25,NR2C2,RBSN"
TCGA.AA.A00N.01A	3	15626712	15642844	7	-0.6258	SMALL-LOSS	FOCAL	1	HACL1
TCGA.AA.A010.01A	3	15749389	15915231	15	-0.8838	SMALL-LOSS	FOCAL	1	ANKRD28
TCGA.AA.A00N.01A	3	15751123	15915231	14	-0.6911	SMALL-LOSS	FOCAL	1	ANKRD28
TCGA.AG.A01L.01A	3	16535221	19938137	66	-0.5919	SMALL-LOSS	FOCAL	8	"DAZL,EFHB,KCNH8,LOC339862,PLCL2,RFTN1,SATB1,TBC1D5"
TCGA.AA.3850	3	16624015	19811852	721	-0.51895	SMALL-LOSS	FOCAL	6	"DAZL,KCNH8,LOC339862,PLCL2,SATB1,TBC1D5"
TCGA.AG.4009.01A	3	16633510	16646621	9	-0.9031	SMALL-LOSS	FOCAL	1	DAZL
TCGA.AA.3560	3	16943877	17208697	74	-0.9572	SMALL-LOSS	FOCAL	2	"PLCL2,TBC1D5"
TCGA.EI.6508	3	16971875	17087833	40	-0.7657	SMALL-LOSS	FOCAL	1	PLCL2
TCGA.AA.A00L.01A	3	17208212	19921075	44	-0.7852	SMALL-LOSS	FOCAL	5	"EFHB,KCNH8,LOC339862,SATB1,TBC1D5"
TCGA.EI.6508	3	17555376	17724338	12	-0.5924	SMALL-LOSS	FOCAL	1	TBC1D5
TCGA.AG.3909.01A	3	18456553	19190148	5	-0.9931	SMALL-LOSS	FOCAL	2	"KCNH8,SATB1"
TCGA.WS.AB45	3	19866891	19867692	4	-1.056	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D0	3	19907763	19919343	3	-1.1021	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3810.01A	3	20113774	20225063	23	-0.7186	SMALL-LOSS	FOCAL	2	"KAT2B,SGOL1"
TCGA.AA.A00L.01A	3	20212164	23852898	21	-0.8083	SMALL-LOSS	FOCAL	4	"SGOL1,UBE2E1,UBE2E2,ZNF385D"
TCGA.AA.3693	3	20306519	20307060	3	-0.8037	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5341	3	20340478	20961640	211	-0.7106	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	3	20446842	21883383	612	-0.62135	SMALL-LOSS	FOCAL	1	ZNF385D
TCGA.CM.6680	3	21357275	21404100	18	-0.6631	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	3	21888145	23002528	464	-0.85325	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6889	3	22562571	22566545	7	-1.2457	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	3	23257155	23419944	30	-0.64595	SMALL-LOSS	FOCAL	1	UBE2E2
TCGA.CK.5914.01A	3	23848710	24006421	17	-0.8509	SMALL-LOSS	FOCAL	4	"NKIRAS1,NR1D2,RPL15,UBE2E1"
TCGA.AG.3909.01A	3	23852898	24003506	15	-0.651	SMALL-LOSS	FOCAL	4	"NKIRAS1,NR1D2,RPL15,UBE2E1"
TCGA.AA.A00N.01A	3	23959300	24003506	8	-0.7308	SMALL-LOSS	FOCAL	2	"NR1D2,RPL15"
TCGA.AA.3850	3	24393295	27278106	1113	-0.53925	SMALL-LOSS	FOCAL	7	"LRRC3B,NEK10,NGLY1,OXSM,RARB,THRB,TOP2B"
TCGA.AA.A00N.01A	3	25792552	25835555	7	-0.7532	SMALL-LOSS	FOCAL	2	"NGLY1,OXSM"
TCGA.AG.4009.01A	3	25805509	25835555	4	-0.7481	SMALL-LOSS	FOCAL	2	"NGLY1,OXSM"
TCGA.AG.3909.01A	3	25820015	25835555	3	-0.7144	SMALL-LOSS	FOCAL	2	"NGLY1,OXSM"
TCGA.CK.5914.01A	3	25831253	25835555	3	-1.0898	SMALL-LOSS	FOCAL	2	"NGLY1,OXSM"
TCGA.CK.5914.01A	3	27498057	27762885	6	-0.9609	SMALL-LOSS	FOCAL	2	"EOMES,SLC4A7"
TCGA.AG.4009.01A	3	27758619	27761625	4	-0.8205	SMALL-LOSS	FOCAL	1	EOMES
TCGA.AG.3909.01A	3	27758619	27762885	5	-1.1523	SMALL-LOSS	FOCAL	1	EOMES
TCGA.AA.3850	3	27971988	31659753	1460	-0.53865	SMALL-LOSS	FOCAL	7	"AZI2,CMC1,GADL1,RBMS3,STT3B,TGFBR2,ZCWPW2"
TCGA.EI.6513	3	28270496	28314081	15	-0.728	SMALL-LOSS	FOCAL	1	CMC1
TCGA.AA.A00N.01A	3	28373307	28381851	6	-1.0354	SMALL-LOSS	FOCAL	1	AZI2
TCGA.AG.4009.01A	3	33134299	33161789	4	-0.7419	SMALL-LOSS	FOCAL	3	"CRTAP,GLB1,TMPPE"
TCGA.AA.A00D.01A	3	33415018	33450681	17	-0.8294	SMALL-LOSS	FOCAL	2	"FBXL2,UBP1"
TCGA.AA.3811	3	33600581	36749176	945	-0.5942	SMALL-LOSS	FOCAL	4	"ARPP21,CLASP2,PDCD6IP,STAC"
TCGA.AA.3941	3	34192974	36736922	834	-0.6685	SMALL-LOSS	FOCAL	2	"ARPP21,STAC"
TCGA.AA.3850	3	34192974	36740272	837	-0.78205	SMALL-LOSS	FOCAL	2	"ARPP21,STAC"
TCGA.AY.6196	3	35388081	35435950	11	-1.012	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3518	3	35694743	35771651	26	-0.5336	SMALL-LOSS	FOCAL	1	ARPP21
TCGA.AA.A010.01A	3	35723213	35732330	7	-0.9195	SMALL-LOSS	FOCAL	1	ARPP21
TCGA.AA.A01Q.01A	3	35723213	35758730	11	-0.7033	SMALL-LOSS	FOCAL	1	ARPP21
TCGA.AA.A00D.01A	3	35725181	36587656	27	-0.752	SMALL-LOSS	FOCAL	2	"ARPP21,STAC"
TCGA.AG.3891.01A	3	35763075	35785282	5	-0.6899	SMALL-LOSS	FOCAL	1	ARPP21
TCGA.DM.A1D9	3	36084596	36504280	179	-0.7361	SMALL-LOSS	FOCAL	1	STAC
TCGA.CK.5914.01A	3	37032718	37048422	7	-0.8832	SMALL-LOSS	FOCAL	2	"EPM2AIP1,MLH1"
TCGA.AA.A00D.01A	3	37053231	37190339	37	-0.766	SMALL-LOSS	FOCAL	2	"LRRFIP2,MLH1"
TCGA.AA.A00L.01A	3	37061754	37323432	37	-0.5537	SMALL-LOSS	FOCAL	3	"GOLGA4,LRRFIP2,MLH1"
TCGA.AA.A00Q.01A	3	37083690	37138033	18	-0.6102	SMALL-LOSS	FOCAL	2	"LRRFIP2,MLH1"
TCGA.AM.5820	3	37100505	37199804	21	-0.5736	SMALL-LOSS	FOCAL	1	LRRFIP2
TCGA.CK.5914.01A	3	37284980	37340764	9	-0.6847	SMALL-LOSS	FOCAL	1	GOLGA4
TCGA.AG.3909.01A	3	37292854	37327428	3	-1.1118	SMALL-LOSS	FOCAL	1	GOLGA4
TCGA.AA.A00D.01A	3	37378543	38022186	42	-0.6408	SMALL-LOSS	FOCAL	4	"C3orf35,CTDSPL,GOLGA4,ITGA9"
TCGA.A6.6138	3	37426130	37977416	222	-0.5157	SMALL-LOSS	FOCAL	3	"C3orf35,CTDSPL,ITGA9"
TCGA.AA.A010.01A	3	37458800	37522925	8	-1.2818	SMALL-LOSS	FOCAL	2	"C3orf35,ITGA9"
TCGA.AA.3864	3	37982107	37984447	5	-1.0294	SMALL-LOSS	FOCAL	1	CTDSPL
TCGA.G5.6641	3	37982756	37984447	3	-0.6895	SMALL-LOSS	FOCAL	1	CTDSPL
TCGA.CK.5914.01A	3	38035122	38086992	29	-0.5231	SMALL-LOSS	FOCAL	3	"DLEC1,PLCD1,VILL"
TCGA.AA.A01Q.01A	3	38037182	38061630	23	-0.7277	SMALL-LOSS	FOCAL	2	"PLCD1,VILL"
TCGA.AG.3909.01A	3	38037182	38080679	24	-0.6984	SMALL-LOSS	FOCAL	2	"PLCD1,VILL"
TCGA.AG.A015.01A	3	38057945	38105275	9	-0.6677	SMALL-LOSS	FOCAL	2	"DLEC1,PLCD1"
TCGA.AG.4009.01A	3	38086992	38129747	9	-1.1352	SMALL-LOSS	FOCAL	1	DLEC1
TCGA.AA.A010.01A	3	38086992	38135097	11	-0.7765	SMALL-LOSS	FOCAL	1	DLEC1
TCGA.CK.5914.01A	3	38101183	38129747	8	-1.1896	SMALL-LOSS	FOCAL	1	DLEC1
TCGA.AG.3909.01A	3	38125621	38129747	4	-0.6535	SMALL-LOSS	FOCAL	1	DLEC1
TCGA.AG.3891.01A	3	38125621	38134235	5	-0.8536	SMALL-LOSS	FOCAL	1	DLEC1
TCGA.AA.A01Q.01A	3	38164476	38175374	8	-0.7624	SMALL-LOSS	FOCAL	1	ACAA1
TCGA.AG.3909.01A	3	38167007	38224447	14	-0.5765	SMALL-LOSS	FOCAL	3	"ACAA1,MYD88,OXSR1"
TCGA.AA.A00N.01A	3	38167656	38232180	16	-0.7621	SMALL-LOSS	FOCAL	3	"ACAA1,MYD88,OXSR1"
TCGA.AA.A00D.01A	3	38257578	38357763	32	-0.8165	SMALL-LOSS	FOCAL	3	"OXSR1,SLC22A13,SLC22A14"
TCGA.AA.A010.01A	3	38518758	38524577	8	-0.8053	SMALL-LOSS	FOCAL	1	ACVR2B
TCGA.AG.3909.01A	3	38539103	38548333	4	-0.9794	SMALL-LOSS	FOCAL	1	EXOG
TCGA.AG.3732	3	38721159	38782736	28	-0.6121	SMALL-LOSS	FOCAL	1	SCN10A
TCGA.AA.A00D.01A	3	38738822	38961360	48	-0.7375	SMALL-LOSS	FOCAL	2	"SCN10A,SCN11A"
TCGA.AA.3982	3	38893489	38895358	3	-0.8529	SMALL-LOSS	FOCAL	1	SCN11A
TCGA.AA.A00N.01A	3	38968252	39136115	22	-1.0059	SMALL-LOSS	FOCAL	2	"SCN11A,WDR48"
TCGA.AG.3909.01A	3	38986861	38991600	3	-0.8404	SMALL-LOSS	FOCAL	1	SCN11A
TCGA.AG.4009.01A	3	39126094	39226073	43	-0.588	SMALL-LOSS	FOCAL	5	"CSRNP1,GORASP1,TTC21A,WDR48,XIRP1"
TCGA.AG.A01W.01A	3	39128913	39150672	14	-0.5859	SMALL-LOSS	FOCAL	3	"GORASP1,TTC21A,WDR48"
TCGA.AF.3914.01A	3	39133063	39161361	18	-0.7495	SMALL-LOSS	FOCAL	3	"GORASP1,TTC21A,WDR48"
TCGA.AA.A00N.01A	3	39150527	39166507	9	-1.2438	SMALL-LOSS	FOCAL	1	TTC21A
TCGA.AA.A010.01A	3	39153908	39174492	13	-1.1366	SMALL-LOSS	FOCAL	1	TTC21A
TCGA.AA.A010.01A	3	39175659	39187932	11	-0.7897	SMALL-LOSS	FOCAL	2	"CSRNP1,TTC21A"
TCGA.AG.3909.01A	3	39430945	39554852	13	-0.9629	SMALL-LOSS	FOCAL	3	"MOBP,RPSA,SLC25A38"
TCGA.CK.5914.01A	3	39450046	39942270	8	-0.9383	SMALL-LOSS	FOCAL	3	"MOBP,MYRIP,RPSA"
TCGA.AA.3850	3	39965091	40042036	23	-1.03505	SMALL-LOSS	FOCAL	1	MYRIP
TCGA.AA.A00D.01A	3	40085493	40351362	15	-0.7707	SMALL-LOSS	FOCAL	2	"EIF1B,MYRIP"
TCGA.AA.A00N.01A	3	40351362	40442338	7	-1.1568	SMALL-LOSS	FOCAL	2	"EIF1B,ENTPD3"
TCGA.AG.3909.01A	3	40351362	40442338	7	-0.7375	SMALL-LOSS	FOCAL	2	"EIF1B,ENTPD3"
TCGA.CK.5914.01A	3	40352367	40433466	5	-1.22	SMALL-LOSS	FOCAL	2	"EIF1B,ENTPD3"
TCGA.AA.A00D.01A	3	40433466	40498762	9	-0.7538	SMALL-LOSS	FOCAL	1	ENTPD3
TCGA.CK.5914.01A	3	40499351	40573564	19	-0.8655	SMALL-LOSS	FOCAL	4	"RPL14,ZNF619,ZNF620,ZNF621"
TCGA.AG.3909.01A	3	40499351	40573984	20	-0.7305	SMALL-LOSS	FOCAL	4	"RPL14,ZNF619,ZNF620,ZNF621"
TCGA.AA.A00N.01A	3	40499351	41266654	24	-0.7909	SMALL-LOSS	FOCAL	5	"CTNNB1,RPL14,ZNF619,ZNF620,ZNF621"
TCGA.AG.A016.01A	3	40573984	41275583	9	-0.6351	SMALL-LOSS	FOCAL	2	"CTNNB1,ZNF621"
TCGA.AD.A5EK	3	41397455	41638983	79	-0.8269	SMALL-LOSS	FOCAL	1	ULK4
TCGA.AF.3914.01A	3	42448327	42576418	10	-0.5905	SMALL-LOSS	FOCAL	2	"LYZL4,VIPR1"
TCGA.AG.3882	3	42546476	42553261	10	-1.1217	SMALL-LOSS	FOCAL	1	VIPR1
TCGA.AA.A00N.01A	3	42573242	42662867	20	-0.8018	SMALL-LOSS	FOCAL	4	"NKTR,SEC22C,SS18L2,VIPR1"
TCGA.AA.A010.01A	3	42594703	42610308	6	-0.6893	SMALL-LOSS	FOCAL	1	SEC22C
TCGA.AF.3914.01A	3	42680079	42687332	6	-0.5321	SMALL-LOSS	FOCAL	1	NKTR
TCGA.CK.5914.01A	3	42683943	42730344	13	-0.5402	SMALL-LOSS	FOCAL	3	"KLHL40,NKTR,ZBTB47"
TCGA.AA.A02K.01A	3	42687333	42705682	8	-0.5955	SMALL-LOSS	FOCAL	2	"NKTR,ZBTB47"
TCGA.AA.A00N.01A	3	42700987	42735057	14	-0.7272	SMALL-LOSS	FOCAL	3	"HHATL,KLHL40,ZBTB47"
TCGA.AG.3909.01A	3	42702926	42735057	13	-0.8984	SMALL-LOSS	FOCAL	3	"HHATL,KLHL40,ZBTB47"
TCGA.AG.A01W.01A	3	42713954	42717166	5	-1.038	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	3	42750420	42905948	16	-0.8158	SMALL-LOSS	FOCAL	3	"ACKR2,CCDC13,HIGD1A"
TCGA.AA.A02K.01A	3	42784370	42794021	5	-0.6491	SMALL-LOSS	FOCAL	1	CCDC13
TCGA.AG.3909.01A	3	42798509	42955812	15	-0.6809	SMALL-LOSS	FOCAL	5	"ACKR2,CCDC13,CYP8B1,HIGD1A,ZNF662"
TCGA.AA.3850	3	43278296	43285368	6	-1.22555	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	3	44195998	44199757	5	-1.2486	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	3	44463034	44610652	14	-0.5945	SMALL-LOSS	FOCAL	3	"ZKSCAN7,ZNF445,ZNF852"
TCGA.AA.A00N.01A	3	44598491	44685337	13	-1.1575	SMALL-LOSS	FOCAL	3	"ZKSCAN7,ZNF197,ZNF660"
TCGA.CK.5914.01A	3	44598491	44795665	26	-0.8327	SMALL-LOSS	FOCAL	7	"KIAA1143,ZKSCAN7,ZNF197,ZNF35,ZNF501,ZNF502,ZNF660"
TCGA.AA.A010.01A	3	44838991	44852301	9	-0.6808	SMALL-LOSS	FOCAL	1	KIF15
TCGA.AA.A00N.01A	3	44842881	44847300	5	-0.7856	SMALL-LOSS	FOCAL	1	KIF15
TCGA.AG.4009.01A	3	44843206	44906480	25	-0.7501	SMALL-LOSS	FOCAL	2	"KIF15,TMEM42"
TCGA.CK.5914.01A	3	44852301	44905642	20	-0.8138	SMALL-LOSS	FOCAL	2	"KIF15,TMEM42"
TCGA.AG.3909.01A	3	44852301	44906480	21	-0.5946	SMALL-LOSS	FOCAL	2	"KIF15,TMEM42"
TCGA.AA.A00N.01A	3	44879725	44884590	4	-0.863	SMALL-LOSS	FOCAL	1	KIF15
TCGA.AA.A00N.01A	3	45030581	45046736	5	-0.9281	SMALL-LOSS	FOCAL	1	EXOSC7
TCGA.AG.3909.01A	3	45030581	45046736	5	-0.5993	SMALL-LOSS	FOCAL	1	EXOSC7
TCGA.CK.5914.01A	3	45030581	45046736	5	-0.7536	SMALL-LOSS	FOCAL	1	EXOSC7
TCGA.CK.5914.01A	3	45772731	45784988	7	-1.0755	SMALL-LOSS	FOCAL	1	SACM1L
TCGA.AA.A01C.01A	3	46482843	46491946	8	-1.0943	SMALL-LOSS	FOCAL	1	LTF
TCGA.AG.4009.01A	3	46727756	46756974	9	-0.8217	SMALL-LOSS	FOCAL	3	"ALS2CL,PRSS50,TMIE"
TCGA.AA.A00N.01A	3	46747228	46786093	12	-0.7098	SMALL-LOSS	FOCAL	4	"PRSS45,PRSS46,PRSS50,TMIE"
TCGA.AA.A00N.01A	3	46874958	46944743	18	-0.66	SMALL-LOSS	FOCAL	3	"MYL3,PRSS42,PTH1R"
TCGA.AA.A01Q.01A	3	46935349	46944743	11	-1.1221	SMALL-LOSS	FOCAL	1	PTH1R
TCGA.AA.A02K.01A	3	46935350	47050449	41	-0.5962	SMALL-LOSS	FOCAL	3	"CCDC12,NBEAL2,PTH1R"
TCGA.AA.A00Q.01A	3	46940784	47079118	16	-0.7653	SMALL-LOSS	FOCAL	4	"CCDC12,NBEAL2,PTH1R,SETD2"
TCGA.AA.A010.01A	3	47037820	47061193	20	-0.9967	SMALL-LOSS	FOCAL	2	"NBEAL2,SETD2"
TCGA.AG.4009.01A	3	47040757	47049303	10	-0.7146	SMALL-LOSS	FOCAL	1	NBEAL2
TCGA.AA.A00N.01A	3	47040757	47050492	12	-0.6678	SMALL-LOSS	FOCAL	1	NBEAL2
TCGA.AA.3862.01A	3	47049303	47777480	119	-0.5236	SMALL-LOSS	FOCAL	9	"CSPG5,ELP6,KIF9,KLHL18,NBEAL2,PTPN23,SCAP,SETD2,SMARCC1"
TCGA.AA.A00N.01A	3	47298920	47318721	8	-1.293	SMALL-LOSS	FOCAL	1	KIF9
TCGA.AA.A01F.01A	3	47371425	47377978	4	-1.0351	SMALL-LOSS	FOCAL	1	KLHL18
TCGA.AG.3906.01A	3	47453243	47465396	11	-0.5947	SMALL-LOSS	FOCAL	2	"PTPN23,SCAP"
TCGA.AZ.4684.01A	3	47676630	47823051	24	-0.6241	SMALL-LOSS	FOCAL	1	SMARCC1
TCGA.AA.A00N.01A	3	47814255	47870462	7	-1.1304	SMALL-LOSS	FOCAL	2	"DHX30,SMARCC1"
TCGA.AG.3909.01A	3	47852086	47918857	24	-0.8903	SMALL-LOSS	FOCAL	2	"DHX30,MAP4"
TCGA.AA.A010.01A	3	48200403	48266756	17	-1.3033	SMALL-LOSS	FOCAL	2	"CAMP,CDC25A"
TCGA.AG.4009.01A	3	48215727	48266756	10	-0.5437	SMALL-LOSS	FOCAL	2	"CAMP,CDC25A"
TCGA.AF.3914.01A	3	48218799	48228134	7	-1.0603	SMALL-LOSS	FOCAL	1	CDC25A
TCGA.AA.A00N.01A	3	48218799	48351369	23	-1.1272	SMALL-LOSS	FOCAL	5	"CAMP,CDC25A,NME6,SPINK8,ZNF589"
TCGA.CK.5914.01A	3	48218799	48360939	24	-0.6325	SMALL-LOSS	FOCAL	5	"CAMP,CDC25A,NME6,SPINK8,ZNF589"
TCGA.AG.3909.01A	3	48289062	48339868	8	-1.2268	SMALL-LOSS	FOCAL	2	"NME6,ZNF589"
TCGA.AA.A02K.01A	3	48445842	48462610	22	-0.6732	SMALL-LOSS	FOCAL	1	PLXNB1
TCGA.A6.3808.01A	3	48450687	48560921	50	-1.2901	SMALL-LOSS	FOCAL	7	"ATRIP,CCDC51,PFKFB4,PLXNB1,SHISA5,TMA7,TREX1"
TCGA.AF.3914.01A	3	48452250	48460999	12	-0.5325	SMALL-LOSS	FOCAL	1	PLXNB1
TCGA.AG.4009.01A	3	48459273	48538563	32	-0.6731	SMALL-LOSS	FOCAL	6	"ATRIP,CCDC51,PLXNB1,SHISA5,TMA7,TREX1"
TCGA.AF.3914.01A	3	48462035	48485174	11	-1.1727	SMALL-LOSS	FOCAL	3	"CCDC51,PLXNB1,TMA7"
TCGA.AG.3909.01A	3	48462035	48500718	17	-0.715	SMALL-LOSS	FOCAL	4	"ATRIP,CCDC51,PLXNB1,TMA7"
TCGA.AA.A010.01A	3	48463053	48501497	17	-0.9638	SMALL-LOSS	FOCAL	4	"ATRIP,CCDC51,PLXNB1,TMA7"
TCGA.AG.A01W.01A	3	48576752	48596673	29	-0.84	SMALL-LOSS	FOCAL	1	PFKFB4
TCGA.CK.5914.01A	3	48601747	48731826	113	-0.5772	SMALL-LOSS	FOCAL	7	"CELSR3,COL7A1,IP6K2,NCKIPSD,SLC26A6,TMEM89,UQCRC1"
TCGA.A6.3808.01A	3	48602178	48665801	61	-1.0853	SMALL-LOSS	FOCAL	4	"COL7A1,SLC26A6,TMEM89,UQCRC1"
TCGA.AA.A01Q.01A	3	48611902	48643156	38	-0.587	SMALL-LOSS	FOCAL	2	"COL7A1,UQCRC1"
TCGA.AG.3909.01A	3	48626024	48643156	18	-1.1276	SMALL-LOSS	FOCAL	2	"COL7A1,UQCRC1"
TCGA.AA.A00N.01A	3	48637029	48725658	65	-0.5661	SMALL-LOSS	FOCAL	6	"CELSR3,IP6K2,NCKIPSD,SLC26A6,TMEM89,UQCRC1"
TCGA.AG.A01W.01A	3	48655965	48659160	7	-0.7107	SMALL-LOSS	FOCAL	1	TMEM89
TCGA.AA.A010.01A	3	48663326	48731826	58	-0.5783	SMALL-LOSS	FOCAL	4	"CELSR3,IP6K2,NCKIPSD,SLC26A6"
TCGA.AG.A00C.01A	3	48675554	48688753	10	-0.7202	SMALL-LOSS	FOCAL	1	CELSR3
TCGA.AA.3930.01A	3	48675554	48691002	11	-0.9183	SMALL-LOSS	FOCAL	1	CELSR3
TCGA.AG.A016.01A	3	48680169	48683492	4	-1.2732	SMALL-LOSS	FOCAL	1	CELSR3
TCGA.AG.4009.01A	3	48683492	48716769	17	-0.908	SMALL-LOSS	FOCAL	2	"CELSR3,NCKIPSD"
TCGA.AA.A010.01A	3	48999037	49012184	7	-0.5877	SMALL-LOSS	FOCAL	1	ARIH2
TCGA.AA.A010.01A	3	49027652	49043112	8	-0.7865	SMALL-LOSS	FOCAL	1	P4HTM
TCGA.AG.3909.01A	3	49039885	49160628	55	-0.7559	SMALL-LOSS	FOCAL	9	"DALRD3,IMPDH2,LAMB2,NDUFAF3,P4HTM,QARS,QRICH1,USP19,WDR6"
TCGA.CK.5914.01A	3	49060132	49163760	48	-0.8505	SMALL-LOSS	FOCAL	6	"IMPDH2,LAMB2,NDUFAF3,QARS,QRICH1,USP19"
TCGA.AG.4009.01A	3	49133386	49161593	28	-0.5213	SMALL-LOSS	FOCAL	3	"LAMB2,QARS,USP19"
TCGA.AG.3909.01A	3	49200206	49249145	10	-0.8524	SMALL-LOSS	FOCAL	4	"C3orf84,CCDC36,CCDC71,KLHDC8B"
TCGA.AG.A015.01A	3	49227265	49282043	6	-0.5541	SMALL-LOSS	FOCAL	2	"C3orf84,CCDC36"
TCGA.AA.3930.01A	3	49449838	49457595	8	-0.6149	SMALL-LOSS	FOCAL	2	"AMT,TCTA"
TCGA.AA.A010.01A	3	49450419	49463677	13	-0.517	SMALL-LOSS	FOCAL	3	"AMT,NICN1,TCTA"
TCGA.AA.A00N.01A	3	49688979	49849863	85	-0.5909	SMALL-LOSS	FOCAL	10	"AMIGO3,APEH,BSN,CDHR4,FAM212A,GMPPB,IP6K1,MST1,RNF123,UBA7"
TCGA.AA.A01Q.01A	3	49689515	49737648	32	-0.9639	SMALL-LOSS	FOCAL	4	"APEH,BSN,MST1,RNF123"
TCGA.AG.3909.01A	3	49693009	49764546	51	-0.6801	SMALL-LOSS	FOCAL	7	"AMIGO3,APEH,BSN,GMPPB,IP6K1,MST1,RNF123"
TCGA.AA.3930.01A	3	49701814	49736165	24	-0.9569	SMALL-LOSS	FOCAL	4	"APEH,BSN,MST1,RNF123"
TCGA.AA.A01Q.01A	3	49738876	49765488	21	-0.5161	SMALL-LOSS	FOCAL	4	"AMIGO3,GMPPB,IP6K1,RNF123"
TCGA.CK.5914.01A	3	49897570	49966993	26	-0.535	SMALL-LOSS	FOCAL	3	"CAMKV,MON1A,MST1R"
TCGA.AG.A01W.01A	3	49902886	49908123	5	-0.7383	SMALL-LOSS	FOCAL	1	CAMKV
TCGA.AA.A010.01A	3	50099354	50222842	37	-1.1553	SMALL-LOSS	FOCAL	3	"RBM5,RBM6,SEMA3F"
TCGA.AG.A01W.01A	3	50119862	50125808	6	-0.7077	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	3	50229117	50256008	11	-1.0055	SMALL-LOSS	FOCAL	2	"GNAT1,SLC38A3"
TCGA.AA.A010.01A	3	50231917	50294885	16	-0.9788	SMALL-LOSS	FOCAL	3	"GNAI2,GNAT1,SLC38A3"
TCGA.AA.A010.01A	3	50330669	50390660	30	-0.7665	SMALL-LOSS	FOCAL	9	"CYB561D2,HYAL1,HYAL2,HYAL3,NAT6,NPRL2,RASSF1,TUSC2,ZMYND10"
TCGA.AF.3914.01A	3	50355509	50369080	7	-1.2692	SMALL-LOSS	FOCAL	3	"HYAL2,RASSF1,TUSC2"
TCGA.AG.3906.01A	3	50413029	50416854	5	-0.7115	SMALL-LOSS	FOCAL	1	CACNA2D2
TCGA.AA.A01Q.01A	3	50421600	50617505	18	-0.7306	SMALL-LOSS	FOCAL	3	"C3orf18,CACNA2D2,HEMK1"
TCGA.AA.A010.01A	3	51251506	51315000	13	-0.9124	SMALL-LOSS	FOCAL	1	DOCK3
TCGA.AG.3909.01A	3	51347619	51352360	5	-1.1115	SMALL-LOSS	FOCAL	1	DOCK3
TCGA.CK.5914.01A	3	51347619	51352360	5	-0.9187	SMALL-LOSS	FOCAL	1	DOCK3
TCGA.AA.A010.01A	3	51387678	51452071	29	-1.0317	SMALL-LOSS	FOCAL	4	"DOCK3,MANF,RBM15B,VPRBP"
TCGA.AG.4009.01A	3	51423607	51434791	10	-0.9396	SMALL-LOSS	FOCAL	3	"MANF,RBM15B,VPRBP"
TCGA.CK.5914.01A	3	51423607	51436141	11	-1.0666	SMALL-LOSS	FOCAL	3	"MANF,RBM15B,VPRBP"
TCGA.AA.A00N.01A	3	51423607	51452071	17	-1.2675	SMALL-LOSS	FOCAL	3	"MANF,RBM15B,VPRBP"
TCGA.AA.A02K.01A	3	51423608	51429732	5	-0.8718	SMALL-LOSS	FOCAL	2	"MANF,RBM15B"
TCGA.AG.3909.01A	3	51425118	51436141	9	-0.6759	SMALL-LOSS	FOCAL	3	"MANF,RBM15B,VPRBP"
TCGA.AA.A010.01A	3	51624390	51718382	22	-1.1098	SMALL-LOSS	FOCAL	2	"RAD54L2,TEX264"
TCGA.AG.A01W.01A	3	51954541	51957321	5	-1.1092	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	51967492	51975754	9	-1.0677	SMALL-LOSS	FOCAL	1	RRP9
TCGA.CK.5914.01A	3	51975387	52087939	37	-0.6321	SMALL-LOSS	FOCAL	9	"ABHD14A,ABHD14B,ACY1,DUSP7,GPR62,PARP3,PCBP4,RPL29,RRP9"
TCGA.AA.A00N.01A	3	51978058	52109856	36	-0.8176	SMALL-LOSS	FOCAL	9	"ABHD14A,ABHD14B,ACY1,DUSP7,GPR62,PARP3,PCBP4,POC1A,RPL29"
TCGA.AF.3914.01A	3	51989622	52087939	24	-1.0383	SMALL-LOSS	FOCAL	7	"ABHD14A,ABHD14B,ACY1,DUSP7,GPR62,PCBP4,RPL29"
TCGA.AG.4009.01A	3	51989622	52097024	24	-0.9455	SMALL-LOSS	FOCAL	7	"ABHD14A,ABHD14B,ACY1,DUSP7,GPR62,PCBP4,RPL29"
TCGA.AA.A02K.01A	3	52072070	52159067	8	-0.6844	SMALL-LOSS	FOCAL	2	"DUSP7,POC1A"
TCGA.AA.A00N.01A	3	52183207	52304697	41	-1.0986	SMALL-LOSS	FOCAL	6	"ALAS1,POC1A,PPM1M,TLR9,TWF2,WDR82"
TCGA.AG.3909.01A	3	52184973	52259443	14	-1.1899	SMALL-LOSS	FOCAL	3	"ALAS1,POC1A,TLR9"
TCGA.AA.A010.01A	3	52233237	52269007	19	-0.5452	SMALL-LOSS	FOCAL	3	"ALAS1,TLR9,TWF2"
TCGA.AG.3909.01A	3	52263000	52304697	20	-0.6313	SMALL-LOSS	FOCAL	3	"PPM1M,TWF2,WDR82"
TCGA.AG.4009.01A	3	52264838	52312170	17	-0.9129	SMALL-LOSS	FOCAL	3	"PPM1M,TWF2,WDR82"
TCGA.AF.3914.01A	3	52281092	52292510	8	-0.958	SMALL-LOSS	FOCAL	2	"PPM1M,WDR82"
TCGA.AA.A010.01A	3	52324421	52328180	6	-1.1009	SMALL-LOSS	FOCAL	1	GLYCTK
TCGA.AA.3967.01A	3	52360118	52429367	54	-0.6088	SMALL-LOSS	FOCAL	1	DNAH1
TCGA.A6.3808.01A	3	52383210	52535973	116	-1.1173	SMALL-LOSS	FOCAL	7	"BAP1,DNAH1,NISCH,PHF7,SEMA3G,STAB1,TNNC1"
TCGA.AA.A00N.01A	3	52396355	52440797	45	-0.6664	SMALL-LOSS	FOCAL	2	"BAP1,DNAH1"
TCGA.AG.3909.01A	3	52396974	52525886	89	-0.5505	SMALL-LOSS	FOCAL	6	"BAP1,DNAH1,NISCH,PHF7,SEMA3G,TNNC1"
TCGA.CK.5914.01A	3	52396974	52574373	142	-0.6333	SMALL-LOSS	FOCAL	9	"BAP1,DNAH1,NISCH,NT5DC2,PHF7,SEMA3G,SMIM4,STAB1,TNNC1"
TCGA.AG.A01W.01A	3	52407860	52415272	10	-0.6913	SMALL-LOSS	FOCAL	1	DNAH1
TCGA.AA.A01Q.01A	3	52436563	52456186	19	-0.8767	SMALL-LOSS	FOCAL	2	"BAP1,PHF7"
TCGA.AA.A010.01A	3	52485209	52540658	40	-0.628	SMALL-LOSS	FOCAL	3	"NISCH,STAB1,TNNC1"
TCGA.AA.A01Q.01A	3	52491800	52535145	22	-0.8001	SMALL-LOSS	FOCAL	2	"NISCH,STAB1"
TCGA.AG.A036.01A	3	52543539	52545784	2	-0.9267	SMALL-LOSS	FOCAL	1	STAB1
TCGA.AG.4009.01A	3	52551850	52563119	9	-0.6102	SMALL-LOSS	FOCAL	2	"NT5DC2,STAB1"
TCGA.A6.3808.01A	3	52562895	52857550	121	-0.6303	SMALL-LOSS	FOCAL	10	"GLT8D1,GNL3,ITIH1,ITIH3,ITIH4,NEK4,NT5DC2,PBRM1,SMIM4,SPCS1"
TCGA.AA.A010.01A	3	52588688	52598025	5	-1.1749	SMALL-LOSS	FOCAL	1	PBRM1
TCGA.AA.A00D.01A	3	52595742	52720029	26	-0.5712	SMALL-LOSS	FOCAL	2	"GNL3,PBRM1"
TCGA.CK.5914.01A	3	52702462	52720029	4	-0.6465	SMALL-LOSS	FOCAL	2	"GNL3,PBRM1"
TCGA.AG.4009.01A	3	52712488	52731689	18	-0.826	SMALL-LOSS	FOCAL	3	"GLT8D1,GNL3,PBRM1"
TCGA.AG.3909.01A	3	52720714	52730518	15	-0.8797	SMALL-LOSS	FOCAL	2	"GLT8D1,GNL3"
TCGA.AA.A010.01A	3	52740025	52773439	6	-0.6571	SMALL-LOSS	FOCAL	3	"GLT8D1,NEK4,SPCS1"
TCGA.AG.3909.01A	3	52794771	52802323	5	-0.8806	SMALL-LOSS	FOCAL	1	NEK4
TCGA.CK.5914.01A	3	52794771	52802323	5	-1.0521	SMALL-LOSS	FOCAL	1	NEK4
TCGA.AA.A00Q.01A	3	52797439	52814261	11	-0.7	SMALL-LOSS	FOCAL	2	"ITIH1,NEK4"
TCGA.AG.A01W.01A	3	52822412	52825889	4	-1.1325	SMALL-LOSS	FOCAL	1	ITIH1
TCGA.AA.A00N.01A	3	52886580	52954502	12	-0.8918	SMALL-LOSS	FOCAL	3	"SFMBT1,TMEM110,TMEM110-MUSTN1"
TCGA.AA.A010.01A	3	52889340	52959988	13	-0.6024	SMALL-LOSS	FOCAL	3	"SFMBT1,TMEM110,TMEM110-MUSTN1"
TCGA.AG.4009.01A	3	52939114	52947447	7	-0.5775	SMALL-LOSS	FOCAL	1	SFMBT1
TCGA.AA.A01F.01A	3	53220569	53221290	2	-1.3028	SMALL-LOSS	FOCAL	1	PRKCD
TCGA.CK.5914.01A	3	53353368	53535605	7	-0.7218	SMALL-LOSS	FOCAL	2	"CACNA1D,DCP1A"
TCGA.AA.A00N.01A	3	53376134	53535605	6	-1.0701	SMALL-LOSS	FOCAL	2	"CACNA1D,DCP1A"
TCGA.AG.4009.01A	3	53529201	53535605	3	-0.7611	SMALL-LOSS	FOCAL	1	CACNA1D
TCGA.AA.A00D.01A	3	53535605	53851783	45	-0.6492	SMALL-LOSS	FOCAL	2	"CACNA1D,CHDH"
TCGA.CK.5914.01A	3	53810578	54661770	56	-0.6245	SMALL-LOSS	FOCAL	6	"ACTR8,CACNA1D,CACNA2D3,CHDH,IL17RB,SELK"
TCGA.AG.3909.01A	3	53851783	54157491	35	-1.0776	SMALL-LOSS	FOCAL	5	"ACTR8,CACNA2D3,CHDH,IL17RB,SELK"
TCGA.AG.3909.01A	3	55504068	55520932	5	-0.9186	SMALL-LOSS	FOCAL	1	WNT5A
TCGA.DC.4745	3	55929043	55929484	3	-0.66	SMALL-LOSS	FOCAL	1	ERC2
TCGA.AA.A00N.01A	3	56592810	56627915	9	-0.7388	SMALL-LOSS	FOCAL	1	CCDC66
TCGA.CK.5914.01A	3	56592810	56627915	9	-1.2456	SMALL-LOSS	FOCAL	1	CCDC66
TCGA.AA.A010.01A	3	56651108	56653758	4	-0.6068	SMALL-LOSS	FOCAL	1	CCDC66
TCGA.AA.A00N.01A	3	56694722	56763286	11	-1.0817	SMALL-LOSS	FOCAL	2	"ARHGEF3,FAM208A"
TCGA.AA.A010.01A	3	56696366	56707561	8	-0.5271	SMALL-LOSS	FOCAL	1	FAM208A
TCGA.AA.3848	3	57031468	57032240	3	-0.8712	SMALL-LOSS	FOCAL	1	ARHGEF3
TCGA.AA.A00N.01A	3	57069080	57144184	11	-0.7454	SMALL-LOSS	FOCAL	3	"ARHGEF3,IL17RD,SPATA12"
TCGA.CK.5914.01A	3	57107696	57154215	12	-0.5299	SMALL-LOSS	FOCAL	3	"ARHGEF3,IL17RD,SPATA12"
TCGA.CK.5914.01A	3	57232183	57287687	16	-0.863	SMALL-LOSS	FOCAL	2	"APPL1,HESX1"
TCGA.CK.5914.01A	3	57357480	57368772	3	-1.0992	SMALL-LOSS	FOCAL	1	DNAH12
TCGA.CK.5914.01A	3	57422637	57448367	13	-0.7569	SMALL-LOSS	FOCAL	1	DNAH12
TCGA.A6.3808.01A	3	57422637	57902593	74	-1.1522	SMALL-LOSS	FOCAL	5	"ARF4,DENND6A,DNAH12,PDE12,SLMAP"
TCGA.CK.5914.01A	3	57486993	57631339	26	-0.7393	SMALL-LOSS	FOCAL	4	"ARF4,DENND6A,DNAH12,PDE12"
TCGA.A6.6648	3	57990919	57998985	2	-0.6739	SMALL-LOSS	FOCAL	1	FLNB
TCGA.AA.A010.01A	3	58242262	58318675	13	-1.2574	SMALL-LOSS	FOCAL	3	"ABHD6,PXK,RPP14"
TCGA.AG.4009.01A	3	58256607	58302585	8	-0.5716	SMALL-LOSS	FOCAL	2	"ABHD6,RPP14"
TCGA.AG.3909.01A	3	58270743	58303095	7	-0.999	SMALL-LOSS	FOCAL	2	"ABHD6,RPP14"
TCGA.CK.5914.01A	3	58270743	58303095	7	-1.0997	SMALL-LOSS	FOCAL	2	"ABHD6,RPP14"
TCGA.CK.5914.01A	3	58413753	58490884	10	-0.9758	SMALL-LOSS	FOCAL	3	"ACOX2,KCTD6,PDHB"
TCGA.AG.3909.01A	3	58413753	58494593	11	-0.569	SMALL-LOSS	FOCAL	3	"ACOX2,KCTD6,PDHB"
TCGA.AA.A01Q.01A	3	58619949	58631199	6	-1.0575	SMALL-LOSS	FOCAL	1	FAM3D
TCGA.CK.5914.01A	3	58849284	58870229	6	-0.915	SMALL-LOSS	FOCAL	1	C3orf67
TCGA.D5.6532	3	59700602	60250379	464	-0.7076	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A0XD	3	59737488	60007656	243	-0.668	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3715	3	59741374	60038631	280	-0.5501	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.A026	3	59755529	60124186	353	-0.5215	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6653	3	59768348	59823780	31	-0.8624	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A28H	3	59796868	59891419	52	-0.58	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A01V	3	59796868	60227591	375	-0.7642	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3866	3	59818353	60250379	378	-0.5516	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.5659	3	59839049	60038277	194	-1.1494	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AY.5543	3	59839072	60050092	223	-0.6964	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3663	3	59849546	59936996	79	-1.1011	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F4.6569	3	59849546	60101852	267	-0.6159	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CK.5913	3	59851123	59946468	89	-0.6445	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3848	3	59863927	59997111	153	-0.9364	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3492	3	59888165	60103407	238	-0.677	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.2683	3	59935242	60214366	266	-0.7435	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A01R	3	59940837	60022584	106	-0.7469	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CK.5913	3	59949139	60279945	287	-0.6776	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3949	3	59980894	60098143	133	-0.569	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DY.A0XA	3	60001413	60263720	213	-0.6775	SMALL-LOSS	FOCAL	1	FHIT
TCGA.NH.A50T	3	60024882	60414406	283	-1.1643	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3664	3	60041686	60372143	232	-0.9647	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A0XD	3	60044494	60055913	14	-0.703	SMALL-LOSS	FOCAL	1	FHIT
TCGA.QG.A5YW	3	60049179	60364045	216	-1.2618	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.5666	3	60059609	60120994	56	-0.8221	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3518	3	60073152	60073651	4	-1.2563	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3881	3	60073152	60279945	140	-0.8982	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CM.5861	3	60091256	60218464	90	-0.7183	SMALL-LOSS	FOCAL	1	FHIT
TCGA.G4.6299	3	60110528	60434881	220	-1.2385	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CA.5797	3	60120398	61220808	662	-0.8136	SMALL-LOSS	FOCAL	1	FHIT
TCGA.G5.6233	3	60123589	60545428	294	-0.5707	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AZ.4315	3	60124387	60250379	75	-0.6007	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AD.6548	3	60125569	60719947	393	-0.9893	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3984	3	60139642	61120494	594	-0.7505	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.4105	3	60149731	60380258	136	-0.8299	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3845	3	60152187	60691604	348	-1.1105	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AY.5543	3	60178832	60705149	344	-0.6147	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3898	3	60182143	60213804	15	-0.8289	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AZ.4614	3	60182143	60290013	59	-0.9337	SMALL-LOSS	FOCAL	1	FHIT
TCGA.G4.6309	3	60197484	60448590	165	-0.7415	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.A026	3	60200022	60210371	7	-0.694	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3831	3	60200022	60248417	35	-0.6968	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	60200022	60405605	135	-0.6538	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A0XD	3	60201378	60315725	75	-0.7642	SMALL-LOSS	FOCAL	1	FHIT
TCGA.G4.6586	3	60204762	60284868	51	-0.5419	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AH.6897	3	60224010	60372143	92	-0.5302	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3902	3	60225473	60309540	43	-0.5542	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3715	3	60226253	60461876	154	-0.6525	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3883	3	60227391	60388321	98	-1.2605	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3516	3	60227591	60716471	329	-0.588	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.3807	3	60227591	61238217	590	-0.7752	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A02Y	3	60235255	60321571	54	-0.8482	SMALL-LOSS	FOCAL	1	FHIT
TCGA.NH.A6GB	3	60236846	60405636	108	-0.9682	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A01R	3	60241047	60341772	65	-0.6263	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DB	3	60248417	60341772	61	-0.8366	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3518	3	60249861	60333852	55	-0.8201	SMALL-LOSS	FOCAL	1	FHIT
TCGA.G4.6293	3	60250063	60556367	225	-1.0762	SMALL-LOSS	FOCAL	1	FHIT
TCGA.D5.7000	3	60250063	61036457	472	-0.6095	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AD.6890	3	60262616	60278061	11	-0.8807	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CM.5860	3	60262616	60372143	73	-0.7618	SMALL-LOSS	FOCAL	1	FHIT
TCGA.EI.6917	3	60263927	60796634	358	-0.7268	SMALL-LOSS	FOCAL	1	FHIT
TCGA.D5.6929	3	60276721	60410186	94	-0.9899	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AF.5654	3	60276721	60459290	129	-0.6143	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A01P	3	60280254	60521595	186	-0.678	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.A026	3	60286385	60462237	126	-0.5359	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6653	3	60290013	60359317	44	-0.6111	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F4.6460	3	60290013	60711658	289	-0.7843	SMALL-LOSS	FOCAL	1	FHIT
TCGA.D5.6927	3	60303503	60488974	147	-0.5423	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3831	3	60303503	60536589	185	-0.5558	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AD.6889	3	60306890	60350708	39	-0.6402	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3898	3	60306890	60351560	40	-0.8032	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3902	3	60309941	60410026	74	-0.967	SMALL-LOSS	FOCAL	1	FHIT
TCGA.D5.6529	3	60311681	60487093	131	-0.899	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.5666	3	60312355	60312566	4	-1.2059	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A0X9	3	60312355	60465278	115	-0.724	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3599	3	60325263	60449008	81	-1.0294	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.5666	3	60331640	60368381	22	-1.0327	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.A02N	3	60331640	60433223	68	-0.9764	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AM.5821	3	60331640	60743318	290	-0.7991	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3529	3	60333852	60397973	36	-0.5803	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3881	3	60333852	60400720	43	-0.8302	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A28C	3	60333852	60514735	141	-0.8664	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AH.6544	3	60338005	60507810	130	-0.569	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3848	3	60341701	60421118	60	-1.1705	SMALL-LOSS	FOCAL	1	FHIT
TCGA.D5.6540	3	60341772	60446057	69	-0.8656	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A01T	3	60349461	60509609	128	-1.0783	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AD.6895	3	60349461	60554520	163	-1.065	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3812	3	60359240	60486889	96	-0.8755	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A1HA	3	60364829	60960163	374	-0.9334	SMALL-LOSS	FOCAL	1	FHIT
TCGA.T9.A92H	3	60370636	60426591	45	-0.6351	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3728	3	60375315	60386940	12	-0.9664	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AH.6897	3	60375315	60417038	33	-1.2999	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3898	3	60377541	60386864	8	-1.0223	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DB	3	60377541	60449008	52	-0.753	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3742	3	60380258	60410186	22	-0.5882	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AY.A8YK	3	60380258	60518503	118	-1.0216	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F5.6814	3	60386781	60449008	46	-0.702	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3898	3	60386940	60420664	30	-0.5804	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3883	3	60391556	60477412	66	-0.7445	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3821	3	60399321	60521595	108	-1.0852	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AZ.6607	3	60400466	60727957	237	-0.6259	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AD.6964	3	60410026	60586833	144	-1.1295	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AD.6889	3	60414406	60556367	118	-0.7842	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CA.5254	3	60417038	60456744	23	-1.1024	SMALL-LOSS	FOCAL	1	FHIT
TCGA.G4.6294	3	60418531	60449008	19	-0.765	SMALL-LOSS	FOCAL	1	FHIT
TCGA.D5.5538	3	60420416	60464075	31	-0.5515	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3949	3	60420416	60479646	44	-0.8744	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A28H	3	60426591	60721777	209	-0.6346	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CM.5861	3	60433223	60579956	122	-0.8646	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AF.A56K	3	60441486	60497105	51	-0.7545	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F4.6570	3	60441486	60521595	77	-0.5412	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3966	3	60446057	60556367	99	-0.9203	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F5.6814	3	60456744	60531241	73	-1.2292	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3664	3	60470010	62530058	956	-0.8345	SMALL-LOSS	FOCAL	5	"C3orf14,CADPS,FEZF2,FHIT,PTPRG"
TCGA.5M.AAT4	3	60487687	61171101	403	-0.762	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CA.5254	3	60488132	60516180	31	-1.1411	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3883	3	60488757	60517562	31	-0.7069	SMALL-LOSS	FOCAL	1	FHIT
TCGA.D5.5540	3	60495052	60500548	11	-0.7911	SMALL-LOSS	FOCAL	1	FHIT
TCGA.D5.6531	3	60495052	61363011	454	-0.5773	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3518	3	60497105	60510908	16	-0.7143	SMALL-LOSS	FOCAL	1	FHIT
TCGA.G4.6294	3	60509609	60531241	16	-0.857	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CM.6163	3	60512504	60568252	42	-0.7671	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3510	3	60514661	60544870	22	-0.9692	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3906.01A	3	60522576	62278796	31	-0.6432	SMALL-LOSS	FOCAL	2	"FHIT,PTPRG"
TCGA.F5.6814	3	60531296	60569814	31	-0.6875	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A01T	3	60531296	60593141	52	-0.8271	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A022	3	60531296	61078644	311	-0.6794	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DY.A1DD	3	60535730	60605205	57	-0.7924	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AZ.6600	3	60543482	60689475	90	-0.6992	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	60554520	60636124	59	-0.7575	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3529	3	60559046	60576768	13	-0.5864	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3941	3	60567101	60576768	9	-1.3169	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F4.6570	3	60567426	60569814	3	-0.5897	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F5.6814	3	60572072	60586833	12	-1.1356	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6653	3	60573768	60626005	44	-1.1142	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AH.6643	3	60574720	60643044	44	-0.8211	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3543	3	60576768	60960163	204	-0.6307	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F5.6814	3	60588626	60647539	37	-0.6025	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AD.6964	3	60588626	60674208	49	-0.6955	SMALL-LOSS	FOCAL	1	FHIT
TCGA.NH.A50T	3	60604488	60825651	119	-0.5972	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3518	3	60620283	60660178	18	-0.8406	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AZ.4315	3	60621083	61040174	205	-0.7454	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.4105	3	60647539	60660178	8	-1.2145	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3529	3	60648068	61096354	234	-0.5658	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DY.A1H8	3	60660119	60770569	62	-0.8101	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A1DA	3	60661990	62803216	1006	-1.2101	SMALL-LOSS	FOCAL	5	"C3orf14,CADPS,FEZF2,FHIT,PTPRG"
TCGA.D5.6532	3	60666611	61097393	226	-0.8263	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AZ.4308	3	60686771	61447980	349	-0.6011	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AH.6544	3	60723909	60972828	116	-0.6708	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6782	3	60736865	61011408	120	-0.669	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A28H	3	60770569	61268159	242	-0.5878	SMALL-LOSS	FOCAL	1	FHIT
TCGA.F4.6460	3	60771431	60792281	14	-0.6268	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	60771431	60839057	29	-0.7279	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3831	3	60787953	60808404	13	-0.796	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.4008	3	60792281	61059430	140	-0.9272	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3941	3	60794216	60919393	50	-1.1095	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AF.A56K	3	60800698	60942296	68	-0.6468	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.2683	3	60807827	61066986	143	-0.8153	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A01R	3	60817321	60874076	23	-0.7048	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3558	3	60839057	61049558	114	-1.0131	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AZ.4682	3	60877991	60942296	37	-0.7205	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	60919393	60938973	20	-0.5274	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.3516	3	60919393	61115119	113	-0.5282	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.A026	3	60920017	61017658	51	-0.5821	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CM.6677	3	60931939	61127303	114	-0.9676	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AF.A56N	3	60933038	61207076	150	-0.6506	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AM.5821	3	60942296	61066986	77	-0.5808	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.4105	3	60960163	61096354	77	-0.8355	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DC.6682	3	60995935	61234831	129	-0.8721	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AA.A01R	3	61000925	61043512	26	-0.5613	SMALL-LOSS	FOCAL	1	FHIT
TCGA.DM.A0X9	3	61011408	61190181	116	-0.8218	SMALL-LOSS	FOCAL	1	FHIT
TCGA.A6.6780	3	61012746	61190181	115	-0.5897	SMALL-LOSS	FOCAL	1	FHIT
TCGA.CM.6171	3	61039483	61181317	96	-0.7379	SMALL-LOSS	FOCAL	1	FHIT
TCGA.EI.6513	3	61096224	61106320	8	-1.2256	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3592	3	61096224	61116008	14	-1.3143	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3898	3	61115119	61116008	3	-1.0218	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3882	3	61118796	61169454	36	-0.5368	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.4015	3	61127204	61136893	4	-0.9692	SMALL-LOSS	FOCAL	1	FHIT
TCGA.EI.6512	3	61136873	61190181	38	-0.9733	SMALL-LOSS	FOCAL	1	FHIT
TCGA.G4.6299	3	61136873	61275061	61	-1.1106	SMALL-LOSS	FOCAL	1	FHIT
TCGA.AG.3909.01A	3	62306077	62355730	5	-0.804	SMALL-LOSS	FOCAL	2	"C3orf14,FEZF2"
TCGA.CK.5914.01A	3	62306077	62357190	7	-0.7846	SMALL-LOSS	FOCAL	2	"C3orf14,FEZF2"
TCGA.AG.4009.01A	3	62355730	62357190	3	-1.0418	SMALL-LOSS	FOCAL	1	FEZF2
TCGA.A6.6648	3	63080031	63092658	4	-0.669	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	3	63996296	64007962	5	-0.8427	SMALL-LOSS	FOCAL	1	PSMD6
TCGA.CK.5914.01A	3	63996296	64007962	5	-0.7413	SMALL-LOSS	FOCAL	1	PSMD6
TCGA.AA.A00N.01A	3	63996296	64008961	6	-1.1408	SMALL-LOSS	FOCAL	1	PSMD6
TCGA.AA.A00L.01A	3	64085336	66396769	67	-0.8043	SMALL-LOSS	FOCAL	4	"ADAMTS9,MAGI1,PRICKLE2,SLC25A26"
TCGA.AA.A00D.01A	3	64085336	66463257	84	-0.8369	SMALL-LOSS	FOCAL	5	"ADAMTS9,LRIG1,MAGI1,PRICKLE2,SLC25A26"
TCGA.AA.A00N.01A	3	64641214	65372758	15	-1.122	SMALL-LOSS	FOCAL	2	"ADAMTS9,MAGI1"
TCGA.AG.3909.01A	3	64666838	65372758	12	-1.0983	SMALL-LOSS	FOCAL	2	"ADAMTS9,MAGI1"
TCGA.AA.3982	3	65148620	65153759	14	-0.7733	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6648	3	65189643	65196306	3	-1.1227	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2693	3	65189643	65196306	3	-1.0429	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	3	65344697	65372758	9	-0.7053	SMALL-LOSS	FOCAL	1	MAGI1
TCGA.CM.4752	3	66643354	66646573	3	-0.8027	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	3	67049353	67058414	3	-1.0343	SMALL-LOSS	FOCAL	1	KBTBD8
TCGA.AF.2693	3	68091878	68534532	164	-0.6178	SMALL-LOSS	FOCAL	1	FAM19A1
TCGA.AG.3909.01A	3	69047115	69075100	11	-0.6642	SMALL-LOSS	FOCAL	2	"EOGT,TMF1"
TCGA.AG.4009.01A	3	69047115	69075100	11	-0.72	SMALL-LOSS	FOCAL	2	"EOGT,TMF1"
TCGA.AA.A00N.01A	3	69047115	69077331	13	-1.2528	SMALL-LOSS	FOCAL	2	"EOGT,TMF1"
TCGA.CK.5914.01A	3	69050712	69075100	10	-0.8637	SMALL-LOSS	FOCAL	2	"EOGT,TMF1"
TCGA.AA.A00N.01A	3	69110943	69126911	9	-1.0455	SMALL-LOSS	FOCAL	1	UBA3
TCGA.AA.3982	3	69516523	69522534	7	-0.8455	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	3	69597147	69599821	2	-1.0344	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1HA	3	69844113	71483306	552	-0.9514	SMALL-LOSS	FOCAL	2	"FOXP1,MITF"
TCGA.AA.3850	3	70080864	70955185	297	-0.65015	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	3	71496007	71525687	8	-0.7676	SMALL-LOSS	FOCAL	1	FOXP1
TCGA.AA.A00N.01A	3	71748726	73047187	29	-0.5502	SMALL-LOSS	FOCAL	7	"EIF4E3,GPR27,GXYLT2,PPP4R2,PROK2,RYBP,SHQ1"
TCGA.AG.4009.01A	3	71821823	71830569	2	-1.273	SMALL-LOSS	FOCAL	1	PROK2
TCGA.DM.A28C	3	72585103	72585497	3	-1.1134	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1HA	3	73463477	73609226	63	-1.1039	SMALL-LOSS	FOCAL	1	PDZRN3
TCGA.AA.3867	3	74547227	74549263	4	-0.9729	SMALL-LOSS	FOCAL	1	CNTN3
TCGA.AH.6643	3	75363557	75865730	39	-0.5215	SMALL-LOSS	FOCAL	2	"FRG2C,ZNF717"
TCGA.AU.6004	3	75396817	75586270	16	-1.0979	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2692	3	75439780	75545171	13	-1.1764	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6163	3	75461836	75545171	9	-1.234	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4684.01A	3	75790372	77089871	4	-1.3133	SMALL-LOSS	FOCAL	2	"ROBO2,ZNF717"
TCGA.AA.3967.01A	3	77611741	87302824	82	-0.7334	SMALL-LOSS	FOCAL	6	"CADM2,CHMP2B,GBE1,ROBO1,ROBO2,VGLL3"
TCGA.D5.6533	3	77655817	79585157	395	-0.8845	SMALL-LOSS	FOCAL	2	"ROBO1,ROBO2"
TCGA.G4.6322	3	77889236	79338069	296	-0.5221	SMALL-LOSS	FOCAL	1	ROBO1
TCGA.AA.3930.01A	3	78700855	79067485	16	-0.5521	SMALL-LOSS	FOCAL	1	ROBO1
TCGA.DM.A28F	3	78829752	88360714	1993	-0.5734	SMALL-LOSS	FOCAL	10	"C3orf38,CADM2,CGGBP1,CHMP2B,GBE1,HTR1F,POU1F1,ROBO1,VGLL3,ZNF654"
TCGA.AM.5820	3	85051330	93646208	1058	-0.7474	SMALL-LOSS	FOCAL	10	"C3orf38,CADM2,CGGBP1,CHMP2B,EPHA3,HTR1F,POU1F1,PROS1,VGLL3,ZNF654"
TCGA.DY.A1DC	3	85823560	89168882	750	-0.5921	SMALL-LOSS	FOCAL	9	"C3orf38,CADM2,CGGBP1,CHMP2B,EPHA3,HTR1F,POU1F1,VGLL3,ZNF654"
TCGA.AG.3584	3	85903030	86073652	20	-0.5882	SMALL-LOSS	FOCAL	1	CADM2
TCGA.AA.A00N.01A	3	88039852	88205400	9	-0.9942	SMALL-LOSS	FOCAL	4	"C3orf38,CGGBP1,HTR1F,ZNF654"
TCGA.AG.3909.01A	3	88104574	88205400	7	-0.6092	SMALL-LOSS	FOCAL	3	"C3orf38,CGGBP1,ZNF654"
TCGA.AA.3877	3	88159834	90283950	361	-0.5288	SMALL-LOSS	FOCAL	4	"C3orf38,CGGBP1,EPHA3,ZNF654"
TCGA.AG.3909.01A	3	93619600	93646057	5	-0.5782	SMALL-LOSS	FOCAL	1	PROS1
TCGA.AG.3909.01A	3	93754124	93769651	6	-0.8795	SMALL-LOSS	FOCAL	1	ARL13B
TCGA.CK.5914.01A	3	93754124	93783249	10	-0.6508	SMALL-LOSS	FOCAL	3	"ARL13B,DHFRL1,NSUN3"
TCGA.CM.5341	3	96287546	96328826	10	-0.7362	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A008.01A	3	96533448	96585610	2	-0.6582	SMALL-LOSS	FOCAL	1	EPHA6
TCGA.AA.A00N.01A	3	97185195	97202728	4	-1.2667	SMALL-LOSS	FOCAL	1	EPHA6
TCGA.CK.5914.01A	3	97185195	97202728	4	-0.9359	SMALL-LOSS	FOCAL	1	EPHA6
TCGA.AA.A00N.01A	3	98235461	98309809	13	-1.248	SMALL-LOSS	FOCAL	3	"CLDND1,CPOX,GPR15"
TCGA.AG.3909.01A	3	98235461	98311776	14	-0.7671	SMALL-LOSS	FOCAL	3	"CLDND1,CPOX,GPR15"
TCGA.CK.5914.01A	3	98235461	98311776	14	-0.859	SMALL-LOSS	FOCAL	3	"CLDND1,CPOX,GPR15"
TCGA.AG.4009.01A	3	98299494	98309809	6	-0.675	SMALL-LOSS	FOCAL	1	CPOX
TCGA.AG.4009.01A	3	98526884	98568215	10	-0.5671	SMALL-LOSS	FOCAL	1	DCBLD2
TCGA.AA.A00N.01A	3	98526884	98600355	11	-1.0618	SMALL-LOSS	FOCAL	1	DCBLD2
TCGA.AA.A00N.01A	3	100034901	100105602	25	-0.6404	SMALL-LOSS	FOCAL	3	"NIT2,TBC1D23,TOMM70A"
TCGA.AA.A00L.01A	3	100057889	101177752	89	-0.6283	SMALL-LOSS	FOCAL	9	"ABI3BP,ADGRG7,IMPG2,LNP1,NIT2,SENP7,TFG,TMEM45A,TOMM70A"
TCGA.D5.6534	3	100381956	100448182	14	-0.7273	SMALL-LOSS	FOCAL	2	"ADGRG7,TFG"
TCGA.AG.3909.01A	3	100387745	100438804	4	-1.0202	SMALL-LOSS	FOCAL	2	"ADGRG7,TFG"
TCGA.AA.A00N.01A	3	100413569	100451315	5	-1.236	SMALL-LOSS	FOCAL	2	"ADGRG7,TFG"
TCGA.AA.A00N.01A	3	101177752	101578092	49	-0.6349	SMALL-LOSS	FOCAL	8	"CEP97,NFKBIZ,NXPE3,PCNP,RPL24,SENP7,TRMT10C,ZBTB11"
TCGA.A6.3808.01A	3	101283628	101575885	44	-1.0077	SMALL-LOSS	FOCAL	7	"CEP97,NFKBIZ,NXPE3,PCNP,RPL24,TRMT10C,ZBTB11"
TCGA.CK.5914.01A	3	101283628	101578092	45	-0.5978	SMALL-LOSS	FOCAL	7	"CEP97,NFKBIZ,NXPE3,PCNP,RPL24,TRMT10C,ZBTB11"
TCGA.AA.A02E.01A	3	101374901	101451290	17	-1.0623	SMALL-LOSS	FOCAL	3	"CEP97,RPL24,ZBTB11"
TCGA.AA.A00L.01A	3	101504386	107940930	81	-0.6659	SMALL-LOSS	FOCAL	9	"ALCAM,BBX,CBLB,CCDC54,CD47,IFT57,NFKBIZ,NXPE3,ZPLD1"
TCGA.AF.3914.01A	3	101570907	101578092	7	-0.8937	SMALL-LOSS	FOCAL	1	NFKBIZ
TCGA.AG.4009.01A	3	101570907	101578092	7	-0.8595	SMALL-LOSS	FOCAL	1	NFKBIZ
TCGA.AA.3941	3	101984880	105261886	814	-0.6263	SMALL-LOSS	FOCAL	2	"ALCAM,ZPLD1"
TCGA.AA.3844	3	102016203	106985679	1259	-0.518	SMALL-LOSS	FOCAL	3	"ALCAM,CBLB,ZPLD1"
TCGA.AZ.4308	3	103357106	105541245	581	-0.6212	SMALL-LOSS	FOCAL	2	"ALCAM,CBLB"
TCGA.D5.5540	3	103757540	103873913	54	-0.9973	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	3	105640006	106424227	247	-0.6988	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3842	3	106119199	106140484	17	-0.8399	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3842	3	106613660	106617921	5	-0.9153	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6607	3	107549698	107879985	131	-1.1099	SMALL-LOSS	FOCAL	2	"CD47,IFT57"
TCGA.AA.A00L.01A	3	108269959	108279444	7	-1.1463	SMALL-LOSS	FOCAL	1	KIAA1524
TCGA.AA.A010.01A	3	108271030	108295064	12	-0.8201	SMALL-LOSS	FOCAL	1	KIAA1524
TCGA.AA.A00D.01A	3	108281923	108672354	54	-0.5917	SMALL-LOSS	FOCAL	5	"DZIP3,GUCA1C,KIAA1524,RETNLB,TRAT1"
TCGA.AA.A00D.01A	3	108677770	108812233	21	-0.9941	SMALL-LOSS	FOCAL	1	MORC1
TCGA.AG.4009.01A	3	108829535	108833161	2	-0.8933	SMALL-LOSS	FOCAL	1	MORC1
TCGA.AA.3850	3	109417146	111257137	491	-0.82255	SMALL-LOSS	FOCAL	1	PVRL3
TCGA.AA.3941	3	109417146	111286888	503	-0.6246	SMALL-LOSS	FOCAL	2	"CD96,PVRL3"
TCGA.AG.A01W.01A	3	110501865	110611634	13	-0.5903	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3693	3	110516876	110522954	4	-0.555	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	111795711	111821648	6	-0.8991	SMALL-LOSS	FOCAL	2	"C3orf52,TMPRSS7"
TCGA.CK.5914.01A	3	111873769	111926984	11	-0.5613	SMALL-LOSS	FOCAL	1	SLC9C1
TCGA.AA.A00N.01A	3	111887717	111926984	9	-0.811	SMALL-LOSS	FOCAL	1	SLC9C1
TCGA.CK.5914.01A	3	112262846	112292668	10	-0.7953	SMALL-LOSS	FOCAL	2	"ATG3,SLC35A5"
TCGA.AG.3909.01A	3	112267333	112289345	8	-0.9003	SMALL-LOSS	FOCAL	2	"ATG3,SLC35A5"
TCGA.CK.5914.01A	3	112711833	112736243	14	-0.9028	SMALL-LOSS	FOCAL	2	"C3orf17,GTPBP8"
TCGA.AG.3909.01A	3	112718245	112736243	11	-0.7151	SMALL-LOSS	FOCAL	2	"C3orf17,GTPBP8"
TCGA.AA.A00L.01A	3	113002226	113659039	103	-0.5567	SMALL-LOSS	FOCAL	8	"ATP6V1A,BOC,CFAP44,GRAMD1C,KIAA2018,NAA50,SIDT1,SPICE1"
TCGA.AA.A00N.01A	3	113152364	113179412	8	-0.9848	SMALL-LOSS	FOCAL	2	"CFAP44,SPICE1"
TCGA.AG.3909.01A	3	113152364	113184453	9	-0.9286	SMALL-LOSS	FOCAL	2	"CFAP44,SPICE1"
TCGA.CK.5914.01A	3	113164083	113179412	7	-1.2411	SMALL-LOSS	FOCAL	1	SPICE1
TCGA.CK.5914.01A	3	113184453	113225303	10	-0.7118	SMALL-LOSS	FOCAL	1	SPICE1
TCGA.AG.3909.01A	3	113334889	113346443	5	-0.6139	SMALL-LOSS	FOCAL	1	SIDT1
TCGA.AA.A010.01A	3	113373764	113442773	11	-0.608	SMALL-LOSS	FOCAL	2	"KIAA2018,NAA50"
TCGA.AG.4009.01A	3	113563303	113601539	5	-1.1257	SMALL-LOSS	FOCAL	1	GRAMD1C
TCGA.AG.3909.01A	3	113563303	113675149	20	-0.5617	SMALL-LOSS	FOCAL	2	"GRAMD1C,ZDHHC23"
TCGA.CK.5914.01A	3	113563303	113675149	20	-0.6604	SMALL-LOSS	FOCAL	2	"GRAMD1C,ZDHHC23"
TCGA.AF.3914.01A	3	113563303	113677163	21	-0.5726	SMALL-LOSS	FOCAL	2	"GRAMD1C,ZDHHC23"
TCGA.AA.A00N.01A	3	113563303	113683961	23	-1.2006	SMALL-LOSS	FOCAL	3	"GRAMD1C,KIAA1407,ZDHHC23"
TCGA.AG.4009.01A	3	113619831	113658681	10	-0.5488	SMALL-LOSS	FOCAL	1	GRAMD1C
TCGA.AG.4009.01A	3	113659039	113677163	6	-0.9851	SMALL-LOSS	FOCAL	2	"GRAMD1C,ZDHHC23"
TCGA.AA.A00L.01A	3	113664189	113786796	26	-0.8952	SMALL-LOSS	FOCAL	4	"GRAMD1C,KIAA1407,QTRTD1,ZDHHC23"
TCGA.AA.A00D.01A	3	113699455	113784094	15	-1.1197	SMALL-LOSS	FOCAL	2	"KIAA1407,QTRTD1"
TCGA.AA.A00Q.01A	3	113699455	113784094	15	-0.7519	SMALL-LOSS	FOCAL	2	"KIAA1407,QTRTD1"
TCGA.AA.3850	3	114110628	118273773	1353	-0.73875	SMALL-LOSS	FOCAL	3	"GAP43,LSAMP,ZBTB20"
TCGA.AA.3941	3	114111406	114134074	10	-0.9282	SMALL-LOSS	FOCAL	1	ZBTB20
TCGA.AA.3941	3	114248073	118492748	1373	-0.6714	SMALL-LOSS	FOCAL	3	"GAP43,LSAMP,ZBTB20"
TCGA.AA.A01Z	3	114280379	114609979	94	-0.8686	SMALL-LOSS	FOCAL	1	ZBTB20
TCGA.AA.3811	3	115858816	118479482	962	-0.6295	SMALL-LOSS	FOCAL	1	LSAMP
TCGA.A6.5656	3	115942951	116631442	270	-0.7048	SMALL-LOSS	FOCAL	1	LSAMP
TCGA.AY.4071	3	116099040	116537732	201	-0.9864	SMALL-LOSS	FOCAL	1	LSAMP
TCGA.AY.A69D	3	116112809	116131207	15	-0.8353	SMALL-LOSS	FOCAL	1	LSAMP
TCGA.F4.6460	3	116113270	116881713	338	-1.0493	SMALL-LOSS	FOCAL	1	LSAMP
TCGA.AG.3894	3	116246068	116866017	287	-0.7098	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A69D	3	116263636	116426045	64	-1.2005	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A69D	3	116429324	116444704	10	-0.9833	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A69D	3	116453958	116583443	66	-0.9795	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3860	3	116493884	116898326	174	-0.6606	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A69D	3	116729272	116908831	98	-0.9025	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6509	3	117871883	117872601	3	-1.1743	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	3	118675525	118688393	7	-0.9356	SMALL-LOSS	FOCAL	1	IGSF11
TCGA.AA.A00N.01A	3	119171239	119205648	10	-0.9668	SMALL-LOSS	FOCAL	2	"POGLUT1,TMEM39A"
TCGA.CK.5914.01A	3	119188636	119222735	14	-0.6428	SMALL-LOSS	FOCAL	2	"POGLUT1,TIMMDC1"
TCGA.AG.3909.01A	3	119425607	119434382	5	-0.7304	SMALL-LOSS	FOCAL	1	MAATS1
TCGA.CK.5914.01A	3	119425607	119434382	5	-0.9635	SMALL-LOSS	FOCAL	1	MAATS1
TCGA.AA.A01F.01A	3	119526025	119545571	9	-0.821	SMALL-LOSS	FOCAL	2	"GSK3B,NR1I2"
TCGA.AA.A010.01A	3	120489543	120959234	16	-0.6118	SMALL-LOSS	FOCAL	2	"GTF2E1,STXBP5L"
TCGA.AA.3850	3	120577142	120872724	56	-0.85925	SMALL-LOSS	FOCAL	1	STXBP5L
TCGA.AA.3977	3	120845292	120847180	4	-1.0074	SMALL-LOSS	FOCAL	1	STXBP5L
TCGA.AZ.4684.01A	3	121212288	121255898	11	-0.5293	SMALL-LOSS	FOCAL	1	POLQ
TCGA.AA.3509.01A	3	121215604	121248465	8	-0.7005	SMALL-LOSS	FOCAL	1	POLQ
TCGA.CK.5914.01A	3	121238699	121263527	8	-1.0684	SMALL-LOSS	FOCAL	1	POLQ
TCGA.AA.A00N.01A	3	121248465	121263527	6	-1.2543	SMALL-LOSS	FOCAL	1	POLQ
TCGA.AA.A00L.01A	3	121351158	121400507	19	-0.6499	SMALL-LOSS	FOCAL	2	"GOLGB1,HCLS1"
TCGA.AA.A010.01A	3	121366145	121383731	5	-0.5409	SMALL-LOSS	FOCAL	2	"GOLGB1,HCLS1"
TCGA.CK.5914.01A	3	121388011	121421276	11	-0.951	SMALL-LOSS	FOCAL	1	GOLGB1
TCGA.AG.3909.01A	3	121395689	121421276	10	-0.8253	SMALL-LOSS	FOCAL	1	GOLGB1
TCGA.AG.4009.01A	3	121395689	121421276	10	-0.7727	SMALL-LOSS	FOCAL	1	GOLGB1
TCGA.AA.A00N.01A	3	121544849	121575816	7	-0.616	SMALL-LOSS	FOCAL	2	"EAF2,IQCB1"
TCGA.AA.A010.01A	3	122215234	122259319	5	-0.8878	SMALL-LOSS	FOCAL	2	"KPNA1,PARP9"
TCGA.CK.5914.01A	3	122215234	122283247	12	-0.6504	SMALL-LOSS	FOCAL	3	"DTX3L,KPNA1,PARP9"
TCGA.AA.A00N.01A	3	122215234	122290458	17	-1.2293	SMALL-LOSS	FOCAL	3	"DTX3L,KPNA1,PARP9"
TCGA.AG.3909.01A	3	122269416	122290458	11	-0.889	SMALL-LOSS	FOCAL	2	"DTX3L,PARP9"
TCGA.AA.A00N.01A	3	122403991	122525654	25	-1.232	SMALL-LOSS	FOCAL	3	"DIRC2,HSPBAP1,PARP14"
TCGA.CK.5914.01A	3	122403991	122525654	25	-0.7366	SMALL-LOSS	FOCAL	3	"DIRC2,HSPBAP1,PARP14"
TCGA.AF.3914.01A	3	122459182	122478054	5	-0.7997	SMALL-LOSS	FOCAL	1	HSPBAP1
TCGA.AG.4009.01A	3	122459182	122512405	8	-1.3075	SMALL-LOSS	FOCAL	1	HSPBAP1
TCGA.AA.A00L.01A	3	122459182	122630726	21	-0.8111	SMALL-LOSS	FOCAL	3	"DIRC2,HSPBAP1,SEMA5B"
TCGA.AA.A010.01A	3	122459555	122552146	11	-1.1922	SMALL-LOSS	FOCAL	2	"DIRC2,HSPBAP1"
TCGA.AA.A00N.01A	3	122628950	122658248	15	-0.5178	SMALL-LOSS	FOCAL	1	SEMA5B
TCGA.AF.3914.01A	3	122629671	122634300	7	-0.9438	SMALL-LOSS	FOCAL	1	SEMA5B
TCGA.AA.3685	3	123068023	123079158	3	-0.9505	SMALL-LOSS	FOCAL	1	ADCY5
TCGA.AA.3941	3	123629828	123677076	12	-1.1988	SMALL-LOSS	FOCAL	1	CCDC14
TCGA.AA.A00N.01A	3	124453893	124482427	6	-0.8376	SMALL-LOSS	FOCAL	2	"ITGB5,UMPS"
TCGA.CK.5914.01A	3	124453893	124482427	6	-0.8638	SMALL-LOSS	FOCAL	2	"ITGB5,UMPS"
TCGA.AA.3685	3	124480842	124483088	3	-0.7359	SMALL-LOSS	FOCAL	1	ITGB5
TCGA.AA.A010.01A	3	124738088	124810893	8	-0.8405	SMALL-LOSS	FOCAL	2	"HEG1,SLC12A8"
TCGA.AA.3977	3	124810696	124812385	4	-0.8079	SMALL-LOSS	FOCAL	1	SLC12A8
TCGA.AZ.6607	3	124903656	125311261	85	-1.2405	SMALL-LOSS	FOCAL	4	"OSBPL11,SLC12A8,SNX4,ZNF148"
TCGA.AA.A00D.01A	3	124951218	125286186	27	-0.6787	SMALL-LOSS	FOCAL	3	"OSBPL11,SNX4,ZNF148"
TCGA.AA.A00N.01A	3	125295001	125734276	17	-0.7914	SMALL-LOSS	FOCAL	4	"ALG1L,OSBPL11,ROPN1B,SLC41A3"
TCGA.AU.6004	3	125462328	125592289	10	-0.6144	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	3	125725817	125879646	33	-0.6755	SMALL-LOSS	FOCAL	2	"ALDH1L1,SLC41A3"
TCGA.AA.A010.01A	3	126211213	126236385	14	-0.9079	SMALL-LOSS	FOCAL	1	UROC1
TCGA.AG.3891.01A	3	126224507	126229497	4	-1.0137	SMALL-LOSS	FOCAL	1	UROC1
TCGA.AA.A010.01A	3	126676242	126741532	19	-1.1734	SMALL-LOSS	FOCAL	2	"CHCHD6,PLXNA1"
TCGA.AA.A00N.01A	3	126707508	126752712	24	-0.5706	SMALL-LOSS	FOCAL	1	PLXNA1
TCGA.AY.A71X	3	126737267	126757948	5	-0.9009	SMALL-LOSS	FOCAL	1	PLXNA1
TCGA.AA.A00N.01A	3	127298536	127396281	30	-0.5569	SMALL-LOSS	FOCAL	4	"ABTB1,MCM2,PODXL2,TPRA1"
TCGA.AA.A02K.01A	3	127387255	127413802	11	-0.5427	SMALL-LOSS	FOCAL	3	"ABTB1,MGLL,PODXL2"
TCGA.AA.A00N.01A	3	127540490	127771333	9	-0.6674	SMALL-LOSS	FOCAL	3	"KBTBD12,MGLL,SEC61A1"
TCGA.AA.3850	3	127640964	127658085	10	-0.70745	SMALL-LOSS	FOCAL	1	KBTBD12
TCGA.AG.A01W.01A	3	127683827	127707227	14	-0.6748	SMALL-LOSS	FOCAL	1	KBTBD12
TCGA.AG.4009.01A	3	127771613	127801280	12	-0.9951	SMALL-LOSS	FOCAL	2	"RUVBL1,SEC61A1"
TCGA.AA.A010.01A	3	127788301	127820350	8	-1.2465	SMALL-LOSS	FOCAL	2	"RUVBL1,SEC61A1"
TCGA.CM.6163	3	128272080	128366725	24	-0.712	SMALL-LOSS	FOCAL	1	RPN1
TCGA.A6.6653	3	128294354	128334271	9	-0.8919	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	128344670	128516737	9	-1.0034	SMALL-LOSS	FOCAL	2	"RAB7A,RPN1"
TCGA.AA.A00N.01A	3	128690040	128711836	7	-1.2761	SMALL-LOSS	FOCAL	1	KIAA1257
TCGA.AG.4009.01A	3	128711836	128758504	5	-1.1457	SMALL-LOSS	FOCAL	2	"EFCC1,KIAA1257"
TCGA.AA.A00N.01A	3	128991613	129034062	11	-1.274	SMALL-LOSS	FOCAL	3	"COPG1,H1FX,HMCES"
TCGA.AA.A01Q.01A	3	129210914	129231106	8	-0.5194	SMALL-LOSS	FOCAL	1	IFT122
TCGA.AG.3909.01A	3	129269522	129294586	21	-0.539	SMALL-LOSS	FOCAL	2	"H1FOO,PLXND1"
TCGA.AA.A01Q.01A	3	129275115	129290339	15	-0.6793	SMALL-LOSS	FOCAL	1	PLXND1
TCGA.AA.A01Q.01A	3	129291404	129324164	12	-1.0657	SMALL-LOSS	FOCAL	1	PLXND1
TCGA.AA.A010.01A	3	129294586	129373764	10	-1.0958	SMALL-LOSS	FOCAL	2	"PLXND1,TMCC1"
TCGA.F5.6812	3	129312988	129322823	7	-0.7392	SMALL-LOSS	FOCAL	1	PLXND1
TCGA.AG.3728	3	129737382	129892968	12	-0.9027	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.AD.6888	3	129761123	129891740	6	-0.9971	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.CI.6623	3	129761123	129891740	6	-1.2327	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.G4.6295	3	129761123	129891740	6	-0.6912	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.AG.3881	3	129761123	129892968	7	-1.3066	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.EI.6885	3	129761123	129892968	7	-0.5881	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.G4.6314	3	129761123	129892968	7	-0.5189	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.AU.6004	3	129761123	129920257	8	-0.885	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.F4.6463	3	129761123	129920257	8	-1.0374	SMALL-LOSS	FOCAL	1	ALG1L2
TCGA.AA.3666	3	129848416	129891740	3	-0.9267	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3667	3	129848416	129891740	3	-0.7077	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3913	3	129848416	129891740	3	-0.6827	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	3	130279144	130313075	14	-0.6779	SMALL-LOSS	FOCAL	1	COL6A6
TCGA.AA.3930.01A	3	130353350	130360461	3	-0.7673	SMALL-LOSS	FOCAL	1	COL6A6
TCGA.AG.A016.01A	3	130360461	130367884	4	-1.0336	SMALL-LOSS	FOCAL	1	COL6A6
TCGA.AA.A00D.01A	3	130400287	132165260	99	-0.6898	SMALL-LOSS	FOCAL	9	"ACPP,ASTE1,ATP2C1,CPNE4,DNAJC13,MRPL3,NEK11,NUDT16,PIK3R4"
TCGA.CK.5914.01A	3	130442211	130613515	7	-0.8668	SMALL-LOSS	FOCAL	2	"ATP2C1,PIK3R4"
TCGA.AA.A010.01A	3	130672618	130699376	11	-0.6941	SMALL-LOSS	FOCAL	1	ATP2C1
TCGA.AG.A016.01A	3	131216986	131221518	4	-0.8993	SMALL-LOSS	FOCAL	1	MRPL3
TCGA.CK.5914.01A	3	131216986	131253992	5	-0.6751	SMALL-LOSS	FOCAL	2	"CPNE4,MRPL3"
TCGA.AG.A01Y	3	132015808	132029379	3	-0.8136	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	132169460	132176071	5	-1.0664	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.AG.4009.01A	3	132169460	132182489	9	-0.6906	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.AF.3914.01A	3	132169460	132219590	30	-0.6253	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.CK.5914.01A	3	132175040	132182489	6	-0.5373	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.AG.3909.01A	3	132176071	132196581	11	-0.6261	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.AG.4009.01A	3	132184780	132193734	5	-1.1942	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.CK.5914.01A	3	132184780	132198004	7	-1.1551	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.AG.4009.01A	3	132196581	132203378	6	-0.8189	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.CK.5914.01A	3	132199166	132202192	3	-0.5223	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.AA.A00N.01A	3	132202192	132207741	4	-1.0559	SMALL-LOSS	FOCAL	1	DNAJC13
TCGA.AA.A00D.01A	3	132217930	132347136	35	-0.6861	SMALL-LOSS	FOCAL	3	"ACAD11,ACKR4,DNAJC13"
TCGA.AA.A00N.01A	3	132361504	132394390	11	-1.0389	SMALL-LOSS	FOCAL	2	"ACAD11,UBA5"
TCGA.AG.4009.01A	3	132426893	132440760	7	-0.8877	SMALL-LOSS	FOCAL	1	NPHP3
TCGA.AG.3909.01A	3	132431951	133114656	10	-0.5147	SMALL-LOSS	FOCAL	2	"NPHP3,TMEM108"
TCGA.A6.6653	3	133125712	133147788	6	-0.5859	SMALL-LOSS	FOCAL	1	BFSP2
TCGA.CK.5914.01A	3	133193715	133320046	7	-0.707	SMALL-LOSS	FOCAL	3	"BFSP2,CDV3,TOPBP1"
TCGA.AG.3893	3	133246435	133251355	4	-0.6156	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	133320046	133372191	21	-0.5711	SMALL-LOSS	FOCAL	1	TOPBP1
TCGA.AA.A00N.01A	3	133358756	133368607	5	-0.6273	SMALL-LOSS	FOCAL	1	TOPBP1
TCGA.CK.5914.01A	3	133368247	133535672	32	-0.6117	SMALL-LOSS	FOCAL	3	"SRPRB,TF,TOPBP1"
TCGA.AG.3909.01A	3	133368607	133535672	30	-0.8263	SMALL-LOSS	FOCAL	3	"SRPRB,TF,TOPBP1"
TCGA.AA.A00N.01A	3	133465206	133535672	23	-0.6536	SMALL-LOSS	FOCAL	2	"SRPRB,TF"
TCGA.A6.6653	3	133784718	133786716	3	-1.1359	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	134076477	134214093	12	-0.9212	SMALL-LOSS	FOCAL	3	"AMOTL2,ANAPC13,CEP63"
TCGA.AG.3909.01A	3	134076477	134214093	12	-0.7942	SMALL-LOSS	FOCAL	3	"AMOTL2,ANAPC13,CEP63"
TCGA.SS.A7HO	3	136132704	136391194	20	-0.7705	SMALL-LOSS	FOCAL	1	STAG1
TCGA.AG.3909.01A	3	136699261	137483598	7	-0.6448	SMALL-LOSS	FOCAL	2	"IL20RB,SOX14"
TCGA.CK.5914.01A	3	137843068	137907274	11	-0.8479	SMALL-LOSS	FOCAL	3	"A4GNT,ARMC8,DBR1"
TCGA.AG.3909.01A	3	138193026	138248019	12	-0.9843	SMALL-LOSS	FOCAL	2	"CEP70,ESYT3"
TCGA.AA.A00N.01A	3	138193026	138347884	22	-0.8828	SMALL-LOSS	FOCAL	3	"CEP70,ESYT3,FAIM"
TCGA.AG.4009.01A	3	138477974	138762693	8	-0.6243	SMALL-LOSS	FOCAL	6	"FOXL2,FOXL2NB,PIK3CB,PRR23A,PRR23B,PRR23C"
TCGA.AG.3909.01A	3	138664414	138762693	7	-0.7693	SMALL-LOSS	FOCAL	5	"FOXL2,FOXL2NB,PRR23A,PRR23B,PRR23C"
TCGA.AA.A00D.01A	3	139108295	140409769	31	-0.8969	SMALL-LOSS	FOCAL	6	"CLSTN2,COPB2,NMNAT3,RBP1,RBP2,TRIM42"
TCGA.AA.A00N.01A	3	139244636	139258285	3	-0.74	SMALL-LOSS	FOCAL	1	RBP1
TCGA.AG.3909.01A	3	140675362	140681931	3	-0.5693	SMALL-LOSS	FOCAL	1	SLC25A36
TCGA.AA.A00N.01A	3	141326505	141535509	12	-0.6643	SMALL-LOSS	FOCAL	3	"GRK7,RASA2,RNF7"
TCGA.AG.3909.01A	3	141462278	141526486	5	-0.9311	SMALL-LOSS	FOCAL	2	"GRK7,RNF7"
TCGA.CK.5914.01A	3	141462278	141526486	5	-0.7694	SMALL-LOSS	FOCAL	2	"GRK7,RNF7"
TCGA.AG.3742	3	141648607	141833319	32	-0.6373	SMALL-LOSS	FOCAL	1	TFDP2
TCGA.CK.5914.01A	3	141884426	141934403	14	-0.5152	SMALL-LOSS	FOCAL	1	GK5
TCGA.AA.A00N.01A	3	142151486	142188881	12	-1.0711	SMALL-LOSS	FOCAL	2	"ATR,XRN1"
TCGA.CK.5914.01A	3	142168232	142180745	5	-0.7815	SMALL-LOSS	FOCAL	1	ATR
TCGA.AA.A010.01A	3	142416748	142524809	17	-0.8454	SMALL-LOSS	FOCAL	2	"PLS1,TRPC1"
TCGA.AA.3941	3	142503194	142516825	6	-1.1581	SMALL-LOSS	FOCAL	1	TRPC1
TCGA.AA.A010.01A	3	142738743	142775143	20	-1.312	SMALL-LOSS	FOCAL	1	U2SURP
TCGA.AA.A00N.01A	3	142742751	142757668	10	-0.9722	SMALL-LOSS	FOCAL	1	U2SURP
TCGA.AG.3909.01A	3	142753692	142840180	11	-0.6762	SMALL-LOSS	FOCAL	2	"CHST2,U2SURP"
TCGA.AG.4009.01A	3	142753692	142840180	11	-0.8358	SMALL-LOSS	FOCAL	2	"CHST2,U2SURP"
TCGA.CK.5914.01A	3	142755983	142840180	10	-0.9154	SMALL-LOSS	FOCAL	2	"CHST2,U2SURP"
TCGA.AA.3844	3	143368627	148412407	1380	-0.5184	SMALL-LOSS	FOCAL	9	"C3orf58,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,SLC9A9,ZIC1,ZIC4"
TCGA.AA.3941	3	143666016	148406798	1267	-0.6637	SMALL-LOSS	FOCAL	8	"C3orf58,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,ZIC1,ZIC4"
TCGA.AA.A00N.01A	3	143692290	146254232	43	-0.5745	SMALL-LOSS	FOCAL	5	"C3orf58,PLOD2,PLSCR1,PLSCR2,PLSCR4"
TCGA.EI.6508	3	143960414	143976380	5	-0.7713	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	147106547	147131102	7	-1.1905	SMALL-LOSS	FOCAL	2	"ZIC1,ZIC4"
TCGA.CK.5914.01A	3	148711913	148802442	29	-0.6128	SMALL-LOSS	FOCAL	2	"GYG1,HLTF"
TCGA.AA.A010.01A	3	149087574	149095118	4	-1.3019	SMALL-LOSS	FOCAL	1	TM4SF1
TCGA.AA.A00N.01A	3	149374671	149469131	4	-0.8665	SMALL-LOSS	FOCAL	2	"COMMD2,WWTR1"
TCGA.AG.4009.01A	3	149677795	149686094	5	-1.0378	SMALL-LOSS	FOCAL	2	"PFN2,RNF13"
TCGA.AA.A00N.01A	3	149677795	150344750	33	-0.7196	SMALL-LOSS	FOCAL	6	"EIF2A,PFN2,RNF13,SELT,SERP1,TSC22D2"
TCGA.AG.3909.01A	3	150340155	150344750	4	-0.5581	SMALL-LOSS	FOCAL	1	SELT
TCGA.G4.6322	3	151333453	151422997	20	-0.9042	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	3	154021057	154802789	14	-0.5373	SMALL-LOSS	FOCAL	3	"DHX36,GPR149,MME"
TCGA.AA.A00N.01A	3	156260929	156413622	8	-1.0757	SMALL-LOSS	FOCAL	2	"SSR3,TIPARP"
TCGA.F5.6702	3	156714281	156728529	11	-0.5192	SMALL-LOSS	FOCAL	1	LEKR1
TCGA.AG.3909.01A	3	156865978	156877135	7	-1.252	SMALL-LOSS	FOCAL	1	CCNL1
TCGA.CM.6675	3	157370437	157510515	47	-0.7154	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	3	157815774	157820419	4	-0.9711	SMALL-LOSS	FOCAL	1	SHOX2
TCGA.AG.3909.01A	3	157815774	157841618	7	-0.9698	SMALL-LOSS	FOCAL	2	"RSRC1,SHOX2"
TCGA.AA.A00Q.01A	3	158431518	158543751	15	-0.7598	SMALL-LOSS	FOCAL	2	"MFSD1,RARRES1"
TCGA.AG.3909.01A	3	158522054	158531707	6	-1.0475	SMALL-LOSS	FOCAL	1	MFSD1
TCGA.AG.A016.01A	3	159707926	159713159	4	-0.8423	SMALL-LOSS	FOCAL	1	IL12A
TCGA.AA.A00N.01A	3	160133992	160155741	15	-0.5914	SMALL-LOSS	FOCAL	2	"SMC4,TRIM59"
TCGA.AA.3982	3	160467813	165950875	1284	-0.5812	SMALL-LOSS	FOCAL	8	"B3GALNT1,BCHE,NMD3,OTOL1,PPM1L,SI,SLITRK3,SPTSSB"
TCGA.AA.3850	3	161059616	162968668	552	-0.96745	SMALL-LOSS	FOCAL	2	"OTOL1,SPTSSB"
TCGA.AA.3941	3	161203533	162968668	492	-0.9513	SMALL-LOSS	FOCAL	1	OTOL1
TCGA.AA.3941	3	162983195	169221650	1390	-0.5626	SMALL-LOSS	FOCAL	10	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.3850	3	162991228	169221650	1392	-0.67755	SMALL-LOSS	FOCAL	10	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.G4.6310	3	164210991	164247759	12	-0.5943	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	3	164697125	168845615	114	-0.866	SMALL-LOSS	FOCAL	10	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.A00L.01A	3	164697125	168845615	114	-0.8049	SMALL-LOSS	FOCAL	10	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.A00K.01A	3	164700716	168819797	106	-0.7841	SMALL-LOSS	FOCAL	10	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.3967.01A	3	164709103	164793656	38	-0.7606	SMALL-LOSS	FOCAL	1	SI
TCGA.AA.A00Q.01A	3	164716281	168819797	100	-0.5755	SMALL-LOSS	FOCAL	10	"BCHE,GOLIM4,MECOM,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.A00N.01A	3	164905653	164907787	3	-0.6468	SMALL-LOSS	FOCAL	1	SLITRK3
TCGA.CK.5914.01A	3	164905653	164907787	3	-0.6486	SMALL-LOSS	FOCAL	1	SLITRK3
TCGA.DY.A1DG	3	165214115	165270443	12	-0.6149	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3693	3	165867477	165883855	3	-0.8146	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A016.01A	3	167159839	167170677	4	-0.6158	SMALL-LOSS	FOCAL	1	SERPINI2
TCGA.SS.A7HO	3	168721563	168721729	3	-0.8427	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	168861435	169546500	24	-1.0465	SMALL-LOSS	FOCAL	5	"ACTRT3,LRRC34,LRRIQ4,MECOM,MYNN"
TCGA.QG.A5YX	3	168942371	169171617	97	-0.7868	SMALL-LOSS	FOCAL	1	MECOM
TCGA.AY.A71X	3	169212366	169293100	40	-0.7038	SMALL-LOSS	FOCAL	1	MECOM
TCGA.AG.3909.01A	3	169492037	169521791	13	-0.7403	SMALL-LOSS	FOCAL	2	"LRRC34,MYNN"
TCGA.AA.3509.01A	3	169890298	170108796	27	-0.5743	SMALL-LOSS	FOCAL	3	"PHC3,PRKCI,SKIL"
TCGA.AZ.4684.01A	3	169899410	170108796	25	-0.5518	SMALL-LOSS	FOCAL	3	"PHC3,PRKCI,SKIL"
TCGA.AA.A00N.01A	3	170611082	170727730	11	-0.7174	SMALL-LOSS	FOCAL	2	"EIF5A2,SLC2A2"
TCGA.AA.A010.01A	3	170715690	170727730	7	-0.7412	SMALL-LOSS	FOCAL	1	SLC2A2
TCGA.AG.3909.01A	3	171451170	171455645	5	-0.857	SMALL-LOSS	FOCAL	1	PLD1
TCGA.D5.5540	3	172177763	172894390	239	-0.7459	SMALL-LOSS	FOCAL	4	"ECT2,NCEH1,SPATA16,TNFSF10"
TCGA.CK.5914.01A	3	172472274	172474726	3	-0.8805	SMALL-LOSS	FOCAL	1	ECT2
TCGA.AA.A00L.01A	3	172537891	178984370	33	-0.7813	SMALL-LOSS	FOCAL	9	"ECT2,KCNMB2,KCNMB3,NAALADL2,NLGN1,PIK3CA,SPATA16,TBL1XR1,ZMAT3"
TCGA.AA.3811	3	172590558	176011072	1055	-0.629	SMALL-LOSS	FOCAL	3	"NAALADL2,NLGN1,SPATA16"
TCGA.AA.3941	3	172601976	176278741	1139	-0.5527	SMALL-LOSS	FOCAL	3	"NAALADL2,NLGN1,SPATA16"
TCGA.AA.3850	3	172888972	176493666	1113	-0.79365	SMALL-LOSS	FOCAL	2	"NAALADL2,NLGN1"
TCGA.AA.3977	3	173378563	173410322	18	-0.9432	SMALL-LOSS	FOCAL	1	NLGN1
TCGA.DM.A1D0	3	174121994	174532657	112	-0.7657	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6532	3	174213656	174329348	32	-0.9403	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6509	3	174289841	174546684	83	-0.831	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6626	3	174294878	174495958	73	-0.5335	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	3	174313941	174495958	63	-0.7424	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6548	3	174374640	174888941	169	-0.5999	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.F4.6460	3	174382655	174450030	34	-0.7142	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3599	3	174391906	174684648	85	-0.9456	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.DM.A1HA	3	174434062	175071294	226	-0.9237	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.T9.A92H	3	174546684	174640267	31	-0.8138	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.EI.6508	3	174616221	174767353	52	-0.605	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.DC.6682	3	174640267	174737428	30	-0.7458	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.CM.5861	3	174650017	174732011	26	-0.6369	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.A6.3807	3	174684648	174923525	90	-1.0259	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.T9.A92H	3	174696603	174737819	18	-0.669	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.NH.A50T	3	174699254	175069555	148	-0.5909	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.DM.A28C	3	174704228	174831433	48	-0.7382	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.T9.A92H	3	174749964	174880864	44	-0.7085	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.AG.3894	3	174788420	175071294	123	-0.759	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.AZ.4315	3	174788811	175496865	257	-0.6572	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.DC.6682	3	174814398	174898257	36	-0.6904	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.DM.A282.01A	3	174814580	175345038	10	-0.6381	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.AH.6549.01A	3	174814580	175520756	13	-0.8753	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.A6.5666	3	174823697	174981674	62	-0.8443	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.DM.A28H	3	174990763	175496865	179	-0.6625	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.G4.6310	3	175028242	175067593	17	-0.8289	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.AA.A02K.01A	3	175164971	175345031	6	-0.7121	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.CL.4957	3	175250533	175282932	9	-0.5243	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.A6.6780	3	175288978	175570404	68	-0.6147	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.AG.3727	3	175507157	175549032	16	-0.591	SMALL-LOSS	FOCAL	1	NAALADL2
TCGA.AA.3982	3	177726278	178130406	92	-0.7755	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	178742777	178785273	5	-1.0761	SMALL-LOSS	FOCAL	1	ZMAT3
TCGA.AG.3909.01A	3	178742777	178785273	5	-1.0088	SMALL-LOSS	FOCAL	1	ZMAT3
TCGA.AA.A010.01A	3	178941822	179051050	17	-1.039	SMALL-LOSS	FOCAL	3	"KCNMB3,PIK3CA,ZNF639"
TCGA.AA.A00N.01A	3	178947013	178962266	7	-0.617	SMALL-LOSS	FOCAL	2	"KCNMB3,PIK3CA"
TCGA.AG.4009.01A	3	178968514	179047367	5	-0.9136	SMALL-LOSS	FOCAL	2	"KCNMB3,ZNF639"
TCGA.CK.5914.01A	3	178968514	179076581	10	-1.0234	SMALL-LOSS	FOCAL	3	"KCNMB3,MFN1,ZNF639"
TCGA.AG.3909.01A	3	178976637	179069639	8	-1.2819	SMALL-LOSS	FOCAL	3	"KCNMB3,MFN1,ZNF639"
TCGA.AG.3909.01A	3	179287564	179294360	5	-0.5621	SMALL-LOSS	FOCAL	1	ACTL6A
TCGA.AA.A00N.01A	3	179287564	179298644	7	-0.8495	SMALL-LOSS	FOCAL	1	ACTL6A
TCGA.AA.3556	3	179379601	181361311	408	-0.7263	SMALL-LOSS	FOCAL	6	"CCDC39,DNAJC19,FXR1,PEX5L,TTC14,USP13"
TCGA.CK.5914.01A	3	179418782	179529525	23	-0.5382	SMALL-LOSS	FOCAL	2	"PEX5L,USP13"
TCGA.AG.3909.01A	3	179437678	179501786	15	-0.6165	SMALL-LOSS	FOCAL	1	USP13
TCGA.AA.A00N.01A	3	179437678	179519565	16	-0.8942	SMALL-LOSS	FOCAL	2	"PEX5L,USP13"
TCGA.AA.3850	3	179596803	180193118	168	-0.62665	SMALL-LOSS	FOCAL	1	PEX5L
TCGA.AA.3941	3	179606354	181360175	332	-0.5276	SMALL-LOSS	FOCAL	5	"CCDC39,DNAJC19,FXR1,PEX5L,TTC14"
TCGA.AA.A00N.01A	3	179689320	180337572	16	-0.6802	SMALL-LOSS	FOCAL	3	"CCDC39,PEX5L,TTC14"
TCGA.AG.3909.01A	3	179754281	180349250	16	-0.814	SMALL-LOSS	FOCAL	3	"CCDC39,PEX5L,TTC14"
TCGA.CK.5914.01A	3	180320682	180327440	9	-1.0696	SMALL-LOSS	FOCAL	1	TTC14
TCGA.AA.3811	3	182633826	182657665	6	-0.8486	SMALL-LOSS	FOCAL	2	"ATP11B,DCUN1D1"
TCGA.AA.A00N.01A	3	182769926	182912926	18	-1.0142	SMALL-LOSS	FOCAL	3	"LAMP3,MCCC1,MCF2L2"
TCGA.AA.A010.01A	3	182912926	182941836	7	-0.5902	SMALL-LOSS	FOCAL	1	MCF2L2
TCGA.AA.A010.01A	3	182946019	182994616	7	-1.1059	SMALL-LOSS	FOCAL	2	"B3GNT5,MCF2L2"
TCGA.SS.A7HO	3	183203033	183205160	4	-1.1968	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	3	183368137	183442159	11	-0.6974	SMALL-LOSS	FOCAL	2	"KLHL24,YEATS2"
TCGA.AG.A016.01A	3	183515673	183519180	4	-1.0313	SMALL-LOSS	FOCAL	1	YEATS2
TCGA.AA.A00N.01A	3	183518203	183585621	19	-0.5992	SMALL-LOSS	FOCAL	3	"MAP6D1,PARL,YEATS2"
TCGA.CK.5914.01A	3	183818129	184009809	82	-0.6685	SMALL-LOSS	FOCAL	9	"ABCF3,ALG3,AP2M1,CAMK2N2,DVL3,ECE2,EIF2B5,HTR3E,VWA5B2"
TCGA.AG.3909.01A	3	183854373	183963285	47	-0.5848	SMALL-LOSS	FOCAL	6	"ABCF3,ALG3,AP2M1,DVL3,EIF2B5,VWA5B2"
TCGA.AA.A00N.01A	3	183854373	184009809	76	-1.0248	SMALL-LOSS	FOCAL	8	"ABCF3,ALG3,AP2M1,CAMK2N2,DVL3,ECE2,EIF2B5,VWA5B2"
TCGA.AG.4009.01A	3	183862338	183887757	12	-0.9732	SMALL-LOSS	FOCAL	2	"DVL3,EIF2B5"
TCGA.AA.A010.01A	3	183887757	183901233	9	-1.2821	SMALL-LOSS	FOCAL	2	"AP2M1,DVL3"
TCGA.AA.A010.01A	3	183903936	183910878	9	-0.7408	SMALL-LOSS	FOCAL	1	ABCF3
TCGA.A6.3808.01A	3	183952397	184049017	70	-1.1537	SMALL-LOSS	FOCAL	6	"ALG3,CAMK2N2,ECE2,EIF4G1,PSMD2,VWA5B2"
TCGA.AG.3909.01A	3	183994669	184093945	73	-0.7147	SMALL-LOSS	FOCAL	7	"CLCN2,ECE2,EIF4G1,FAM131A,POLR2H,PSMD2,THPO"
TCGA.AA.A01Q.01A	3	184017578	184025641	14	-0.7355	SMALL-LOSS	FOCAL	1	PSMD2
TCGA.CK.5914.01A	3	184025641	184542374	76	-0.6913	SMALL-LOSS	FOCAL	10	"CHRD,CLCN2,EIF4G1,EPHB3,FAM131A,MAGEF1,POLR2H,PSMD2,THPO,VPS8"
TCGA.AA.A00N.01A	3	184033517	184428634	74	-0.8812	SMALL-LOSS	FOCAL	8	"CHRD,CLCN2,EIF4G1,EPHB3,FAM131A,MAGEF1,POLR2H,THPO"
TCGA.AA.A01Q.01A	3	184041591	184093655	38	-0.6478	SMALL-LOSS	FOCAL	5	"CLCN2,EIF4G1,FAM131A,POLR2H,THPO"
TCGA.AA.A01Q.01A	3	184289037	184298139	9	-0.5718	SMALL-LOSS	FOCAL	1	EPHB3
TCGA.CM.6172	3	184292437	184354098	13	-0.7106	SMALL-LOSS	FOCAL	1	EPHB3
TCGA.AA.3941	3	184649025	184693768	8	-0.8165	SMALL-LOSS	FOCAL	1	VPS8
TCGA.AA.3982	3	184650652	184693768	7	-0.7428	SMALL-LOSS	FOCAL	1	VPS8
TCGA.CK.5914.01A	3	184711715	184742049	4	-0.802	SMALL-LOSS	FOCAL	1	VPS8
TCGA.AG.A01W.01A	3	185520131	185531729	16	-0.8168	SMALL-LOSS	FOCAL	1	IGF2BP2
TCGA.AA.3680	3	186025938	186209847	72	-0.7383	SMALL-LOSS	FOCAL	1	DGKG
TCGA.AA.A00N.01A	3	186262004	186303064	17	-1.2019	SMALL-LOSS	FOCAL	3	"CRYGS,DNAJB11,TBCCD1"
TCGA.AG.3909.01A	3	186272012	186295420	9	-0.8387	SMALL-LOSS	FOCAL	2	"DNAJB11,TBCCD1"
TCGA.AA.A00D.01A	3	186333427	186368952	12	-0.8933	SMALL-LOSS	FOCAL	2	"AHSG,FETUB"
TCGA.CK.5914.01A	3	186502154	186522354	16	-1.2315	SMALL-LOSS	FOCAL	2	"EIF4A2,RFC4"
TCGA.DM.A1D6	3	186862992	188483274	709	-0.8695	SMALL-LOSS	FOCAL	7	"BCL6,LPP,MASP1,RTP1,RTP2,RTP4,SST"
TCGA.AG.3909.01A	3	187086180	187451274	14	-0.7438	SMALL-LOSS	FOCAL	4	"BCL6,RTP2,RTP4,SST"
TCGA.AA.3850	3	187116595	187203328	50	-0.81905	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	3	187270292	187278234	6	-1.01855	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	3	187321700	187372641	24	-0.64525	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	3	187419725	187451274	9	-1.1417	SMALL-LOSS	FOCAL	2	"BCL6,RTP2"
TCGA.DM.A1D6	3	188532082	189896462	556	-0.8046	SMALL-LOSS	FOCAL	4	"LPP,P3H2,TP63,TPRG1"
TCGA.AA.A00N.01A	3	189838011	190039766	5	-0.5203	SMALL-LOSS	FOCAL	2	"CLDN1,P3H2"
TCGA.CK.5914.01A	3	190573062	190580306	5	-1.1492	SMALL-LOSS	FOCAL	1	GMNC
TCGA.AG.4009.01A	3	192125792	192516184	3	-0.7271	SMALL-LOSS	FOCAL	2	"FGF12,MB21D2"
TCGA.CA.6715	3	192397455	192475258	26	-0.7822	SMALL-LOSS	FOCAL	1	FGF12
TCGA.AA.A00N.01A	3	192516184	192980729	4	-0.6474	SMALL-LOSS	FOCAL	2	"HRASLS,MB21D2"
TCGA.AF.A56N	3	192571028	194028646	433	-0.7535	SMALL-LOSS	FOCAL	6	"ATP13A4,ATP13A5,HES1,HRASLS,MB21D2,OPA1"
TCGA.CK.5914.01A	3	193128735	193165948	11	-0.6172	SMALL-LOSS	FOCAL	1	ATP13A4
TCGA.AG.4009.01A	3	193854158	193854705	3	-1.0639	SMALL-LOSS	FOCAL	1	HES1
TCGA.AA.A010.01A	3	194177767	194337798	11	-0.7569	SMALL-LOSS	FOCAL	2	"ATP13A3,TMEM44"
TCGA.AA.A02E.01A	3	194309210	194369393	12	-1.0223	SMALL-LOSS	FOCAL	2	"LSG1,TMEM44"
TCGA.AG.4009.01A	3	195474008	195622066	32	-0.7476	SMALL-LOSS	FOCAL	2	"MUC4,TNK2"
TCGA.AF.3914.01A	3	195475723	195498476	18	-0.8533	SMALL-LOSS	FOCAL	1	MUC4
TCGA.CK.5914.01A	3	195479184	195488911	8	-0.7054	SMALL-LOSS	FOCAL	1	MUC4
TCGA.AA.A01Q.01A	3	195590958	195613784	11	-0.607	SMALL-LOSS	FOCAL	1	TNK2
TCGA.AG.3909.01A	3	195778765	195781953	3	-1.1621	SMALL-LOSS	FOCAL	1	TFRC
TCGA.AA.A00N.01A	3	195778765	195794856	12	-0.877	SMALL-LOSS	FOCAL	1	TFRC
TCGA.AG.3909.01A	3	195785096	195792300	7	-0.6228	SMALL-LOSS	FOCAL	1	TFRC
TCGA.AG.3909.01A	3	195794338	195803855	8	-1.0697	SMALL-LOSS	FOCAL	1	TFRC
TCGA.AA.A010.01A	3	195925139	195959240	15	-0.7859	SMALL-LOSS	FOCAL	2	"SLC51A,ZDHHC19"
TCGA.CK.5914.01A	3	195959887	196042920	13	-1.2336	SMALL-LOSS	FOCAL	3	"PCYT1A,SLC51A,TCTEX1D2"
TCGA.AG.3909.01A	3	196033752	196051110	4	-0.8003	SMALL-LOSS	FOCAL	2	"TCTEX1D2,TM4SF19"
TCGA.AA.A00N.01A	3	196044864	196386575	32	-0.7286	SMALL-LOSS	FOCAL	8	"FBXO45,NRROS,RNF168,SMCO1,TCTEX1D2,TM4SF19,UBXN7,WDR53"
TCGA.AG.3909.01A	3	196118637	196134088	4	-0.7234	SMALL-LOSS	FOCAL	1	UBXN7
TCGA.AG.3909.01A	3	196229692	196460621	17	-0.9775	SMALL-LOSS	FOCAL	7	"CEP19,FBXO45,NRROS,PIGX,RNF168,SMCO1,WDR53"
TCGA.CK.5914.01A	3	196229692	196509471	20	-0.9289	SMALL-LOSS	FOCAL	8	"CEP19,FBXO45,NRROS,PAK2,PIGX,RNF168,SMCO1,WDR53"
TCGA.AG.4009.01A	3	196281050	196460621	13	-0.8497	SMALL-LOSS	FOCAL	5	"CEP19,FBXO45,NRROS,PIGX,WDR53"
TCGA.CM.6163	3	196506438	196553866	9	-0.873	SMALL-LOSS	FOCAL	1	PAK2
TCGA.CM.6165.01A	3	196528806	196555157	13	-0.6488	SMALL-LOSS	FOCAL	1	PAK2
TCGA.AA.A00N.01A	3	196650275	196786708	27	-0.6949	SMALL-LOSS	FOCAL	5	"DLG1,MFI2,NCBP2,PIGZ,SENP5"
TCGA.AG.3909.01A	3	196656428	196746448	15	-0.6201	SMALL-LOSS	FOCAL	4	"MFI2,NCBP2,PIGZ,SENP5"
TCGA.AA.A010.01A	3	196748212	196778392	7	-0.5552	SMALL-LOSS	FOCAL	2	"DLG1,MFI2"
TCGA.AG.3909.01A	3	197023185	197241084	4	-1.3143	SMALL-LOSS	FOCAL	2	"BDH1,DLG1"
TCGA.AA.A00N.01A	3	197482647	197508673	9	-1.2868	SMALL-LOSS	FOCAL	1	FYTTD1
TCGA.AG.3909.01A	3	197483250	197508673	8	-0.6273	SMALL-LOSS	FOCAL	1	FYTTD1
TCGA.AA.A02H.01A	3	197585639	197619467	8	-1.2621	SMALL-LOSS	FOCAL	2	"IQCG,LRCH3"
TCGA.AA.A00N.01A	3	197880027	197896676	4	-0.7149	SMALL-LOSS	FOCAL	1	FAM157A
TCGA.AA.A00N.01A	4	53303	87270	7	-1.0161	SMALL-LOSS	FOCAL	2	"ZNF595,ZNF718"
TCGA.AA.A010.01A	4	53303	155092	9	-0.6225	SMALL-LOSS	FOCAL	2	"ZNF595,ZNF718"
TCGA.AG.3742	4	69712	71565	3	-0.5863	SMALL-LOSS	FOCAL	2	"ZNF595,ZNF718"
TCGA.AA.3872	4	69712	159060	26	-0.5149	SMALL-LOSS	FOCAL	2	"ZNF595,ZNF718"
TCGA.A6.6142	4	69712	302933	45	-0.8154	SMALL-LOSS	FOCAL	3	"ZNF595,ZNF718,ZNF732"
TCGA.A6.A567	4	69712	498458	60	-0.5306	SMALL-LOSS	FOCAL	6	"PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AG.4009.01A	4	85610	367311	17	-0.521	SMALL-LOSS	FOCAL	4	"ZNF141,ZNF595,ZNF718,ZNF732"
TCGA.AA.A00Z.01A	4	289178	647603	3	-0.5346	SMALL-LOSS	FOCAL	5	"PDE6B,PIGG,ZNF141,ZNF721,ZNF732"
TCGA.AA.A00Q.01A	4	493098	628429	15	-0.8075	SMALL-LOSS	FOCAL	2	"PDE6B,PIGG"
TCGA.AG.4009.01A	4	647603	727509	26	-0.7681	SMALL-LOSS	FOCAL	5	"ATP5I,MFSD7,MYL5,PCGF3,PDE6B"
TCGA.AA.3939.01A	4	654228	672708	17	-1.155	SMALL-LOSS	FOCAL	3	"ATP5I,MYL5,PDE6B"
TCGA.AA.A02K.01A	4	671719	678497	12	-0.7679	SMALL-LOSS	FOCAL	2	"MFSD7,MYL5"
TCGA.AA.A010.01A	4	682735	941476	40	-0.5931	SMALL-LOSS	FOCAL	5	"CPLX1,GAK,MFSD7,PCGF3,TMEM175"
TCGA.AA.A01Q.01A	4	843420	907325	26	-1.0687	SMALL-LOSS	FOCAL	1	GAK
TCGA.AA.A00Q.01A	4	843420	949491	34	-0.6439	SMALL-LOSS	FOCAL	2	"GAK,TMEM175"
TCGA.AA.A00L.01A	4	941842	949491	8	-0.9488	SMALL-LOSS	FOCAL	1	TMEM175
TCGA.AG.4009.01A	4	941842	998036	20	-0.7923	SMALL-LOSS	FOCAL	4	"DGKQ,IDUA,SLC26A1,TMEM175"
TCGA.AG.A01W.01A	4	1008657	1125355	10	-0.8081	SMALL-LOSS	FOCAL	2	"FGFRL1,RNF212"
TCGA.AA.A01Q.01A	4	1161213	1725415	54	-0.6539	SMALL-LOSS	FOCAL	10	"CRIPAK,CTBP1,FAM53A,MAEA,NKX1-1,SLBP,SPON2,TACC3,TMEM129,UVSSA"
TCGA.AA.A010.01A	4	1205980	1231924	8	-1.0948	SMALL-LOSS	FOCAL	1	CTBP1
TCGA.AA.A010.01A	4	1283649	1374616	20	-0.7725	SMALL-LOSS	FOCAL	2	"MAEA,UVSSA"
TCGA.AG.4009.01A	4	1345461	1729398	25	-0.85	SMALL-LOSS	FOCAL	7	"CRIPAK,FAM53A,NKX1-1,SLBP,TACC3,TMEM129,UVSSA"
TCGA.AA.A010.01A	4	1377562	1670333	10	-1.2835	SMALL-LOSS	FOCAL	4	"CRIPAK,FAM53A,NKX1-1,UVSSA"
TCGA.AG.A01W.01A	4	1640132	1675074	7	-1.1408	SMALL-LOSS	FOCAL	1	FAM53A
TCGA.AG.A016.01A	4	1729398	1742501	7	-0.7108	SMALL-LOSS	FOCAL	1	TACC3
TCGA.AA.A01Q.01A	4	1801410	1850805	22	-0.6982	SMALL-LOSS	FOCAL	2	"FGFR3,LETM1"
TCGA.AA.A02K.01A	4	1801411	1806505	6	-0.9578	SMALL-LOSS	FOCAL	1	FGFR3
TCGA.AG.4009.01A	4	1803073	1808236	6	-0.8395	SMALL-LOSS	FOCAL	1	FGFR3
TCGA.AG.A01W.01A	4	1804218	1932510	29	-0.5984	SMALL-LOSS	FOCAL	3	"FGFR3,LETM1,WHSC1"
TCGA.AG.4009.01A	4	1825364	1850805	7	-0.9127	SMALL-LOSS	FOCAL	1	LETM1
TCGA.AA.A00L.01A	4	1980353	1993234	9	-0.8386	SMALL-LOSS	FOCAL	2	"NELFA,WHSC1"
TCGA.AA.A00N.01A	4	2132919	2180988	10	-1.1806	SMALL-LOSS	FOCAL	1	POLN
TCGA.G4.6299	4	2255062	2454408	62	-0.6674	SMALL-LOSS	FOCAL	3	"CFAP99,MXD4,ZFYVE28"
TCGA.AA.A010.01A	4	2419965	2515370	8	-0.7851	SMALL-LOSS	FOCAL	3	"CFAP99,RNF4,ZFYVE28"
TCGA.CK.5914.01A	4	2691201	2835377	27	-0.5345	SMALL-LOSS	FOCAL	3	"FAM193A,SH3BP2,TNIP2"
TCGA.AF.3914.01A	4	2746083	2941207	38	-0.7566	SMALL-LOSS	FOCAL	5	"ADD1,MFSD10,NOP14,SH3BP2,TNIP2"
TCGA.AG.4009.01A	4	2746484	2877606	12	-0.826	SMALL-LOSS	FOCAL	3	"ADD1,SH3BP2,TNIP2"
TCGA.AG.A01W.01A	4	2913056	3087569	37	-0.6079	SMALL-LOSS	FOCAL	5	"ADD1,GRK4,HTT,MFSD10,NOP14"
TCGA.AG.4009.01A	4	2928285	2959291	23	-0.6669	SMALL-LOSS	FOCAL	3	"ADD1,MFSD10,NOP14"
TCGA.AA.A010.01A	4	2940508	2959291	17	-0.8951	SMALL-LOSS	FOCAL	1	NOP14
TCGA.CK.5914.01A	4	2940508	2959291	17	-1.2625	SMALL-LOSS	FOCAL	1	NOP14
TCGA.AA.A00Q.01A	4	2948101	2959291	10	-1.0193	SMALL-LOSS	FOCAL	1	NOP14
TCGA.CK.5914.01A	4	2964810	3117780	24	-0.5592	SMALL-LOSS	FOCAL	3	"GRK4,HTT,NOP14"
TCGA.AA.A00N.01A	4	3088651	3116981	6	-1.3114	SMALL-LOSS	FOCAL	1	HTT
TCGA.AG.4009.01A	4	3088651	3127228	10	-0.6047	SMALL-LOSS	FOCAL	1	HTT
TCGA.AA.A010.01A	4	3116981	3127228	5	-0.8766	SMALL-LOSS	FOCAL	1	HTT
TCGA.AG.3909.01A	4	3208960	3254885	23	-0.5433	SMALL-LOSS	FOCAL	2	"HTT,MSANTD1"
TCGA.AA.3930.01A	4	3237275	3520550	41	-0.9037	SMALL-LOSS	FOCAL	6	"DOK7,HGFAC,HTT,LRPAP1,MSANTD1,RGS12"
TCGA.A6.6782	4	3941231	4196445	33	-0.8471	SMALL-LOSS	FOCAL	1	OTOP1
TCGA.AA.3982	4	4711168	4713307	4	-0.7718	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	4	5332899	5682917	27	-0.7793	SMALL-LOSS	FOCAL	2	"EVC2,STK32B"
TCGA.AA.3941	4	5431944	5435426	9	-0.6907	SMALL-LOSS	FOCAL	1	STK32B
TCGA.AA.3864	4	5490797	6480509	537	-0.5692	SMALL-LOSS	FOCAL	7	"CRMP1,EVC,EVC2,JAKMIP1,PPP2R2C,STK32B,WFS1"
TCGA.CK.5914.01A	4	5692930	5720933	5	-1.1932	SMALL-LOSS	FOCAL	2	"EVC,EVC2"
TCGA.AA.A00N.01A	4	5692930	5749836	11	-0.739	SMALL-LOSS	FOCAL	2	"EVC,EVC2"
TCGA.CK.5914.01A	4	5966701	6062106	17	-0.7004	SMALL-LOSS	FOCAL	1	JAKMIP1
TCGA.AG.3611.01A	4	6578263	6590723	4	-1.1784	SMALL-LOSS	FOCAL	1	MAN2B2
TCGA.AG.4009.01A	4	6695623	6843746	6	-1.0934	SMALL-LOSS	FOCAL	4	"BLOC1S4,KIAA0232,MRFAP1L1,S100P"
TCGA.AA.A00N.01A	4	6698582	7065771	33	-0.9533	SMALL-LOSS	FOCAL	8	"BLOC1S4,CCDC96,GRPEL1,KIAA0232,MRFAP1L1,S100P,TADA2B,TBC1D14"
TCGA.AA.A01Q.01A	4	6969001	7069641	19	-0.7502	SMALL-LOSS	FOCAL	4	"CCDC96,GRPEL1,TADA2B,TBC1D14"
TCGA.A6.6653	4	7432401	7472410	28	-0.7066	SMALL-LOSS	FOCAL	2	"PSAPL1,SORCS2"
TCGA.AA.A00N.01A	4	7776435	7817699	8	-0.8584	SMALL-LOSS	FOCAL	1	AFAP1
TCGA.AA.A00D.01A	4	7795381	7870307	9	-0.8001	SMALL-LOSS	FOCAL	1	AFAP1
TCGA.CK.5914.01A	4	7968680	8620968	84	-0.6737	SMALL-LOSS	FOCAL	7	"ABLIM2,ACOX3,CPZ,GPR78,HTRA3,SH3TC1,TRMT44"
TCGA.AA.3930.01A	4	8211426	8288251	18	-1.021	SMALL-LOSS	FOCAL	2	"HTRA3,SH3TC1"
TCGA.AA.A01Q.01A	4	8216155	8620968	58	-0.5995	SMALL-LOSS	FOCAL	6	"ACOX3,CPZ,GPR78,HTRA3,SH3TC1,TRMT44"
TCGA.D5.6530	4	8559018	8604862	27	-0.6146	SMALL-LOSS	FOCAL	2	"CPZ,GPR78"
TCGA.AA.3982	4	9384845	9388422	3	-1.134	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5820	4	9421123	9446842	4	-0.7806	SMALL-LOSS	FOCAL	1	DEFB131
TCGA.AG.A01W.01A	4	9714566	10136507	11	-0.7754	SMALL-LOSS	FOCAL	3	"DRD5,SLC2A9,WDR1"
TCGA.AA.A00D.01A	4	9783657	13370131	19	-0.5428	SMALL-LOSS	FOCAL	7	"CLNK,DRD5,HS3ST1,RAB28,SLC2A9,WDR1,ZNF518B"
TCGA.AA.A00F.01A	4	9827969	9987261	9	-0.5308	SMALL-LOSS	FOCAL	1	SLC2A9
TCGA.A6.3808.01A	4	9982164	10502851	24	-0.5271	SMALL-LOSS	FOCAL	4	"CLNK,SLC2A9,WDR1,ZNF518B"
TCGA.CK.5914.01A	4	10022864	10515046	22	-0.5577	SMALL-LOSS	FOCAL	4	"CLNK,SLC2A9,WDR1,ZNF518B"
TCGA.AA.3844	4	10214159	10248271	10	-0.8463	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	10236141	10248271	9	-0.9478	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	10311706	10403544	42	-0.5159	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3885	4	10386972	13355455	1285	-1.2882	SMALL-LOSS	FOCAL	3	"CLNK,HS3ST1,ZNF518B"
TCGA.F5.6814	4	10392353	10403544	3	-0.7475	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	10740266	10744930	3	-1.1025	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	11156369	11168949	16	-0.9198	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	4	11400684	15053990	44	-0.8506	SMALL-LOSS	FOCAL	5	"BOD1L1,CPEB2,HS3ST1,NKX3-2,RAB28"
TCGA.AA.3941	4	11673229	11737033	29	-1.2112	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4614	4	12119859	14807193	1098	-0.8145	SMALL-LOSS	FOCAL	3	"BOD1L1,NKX3-2,RAB28"
TCGA.AA.3941	4	12306783	12343574	13	-1.2467	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	12369884	12548801	31	-0.5203	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	4	13371458	13621515	34	-0.8937	SMALL-LOSS	FOCAL	3	"BOD1L1,NKX3-2,RAB28"
TCGA.AA.A00Q.01A	4	13371458	15053990	42	-0.8237	SMALL-LOSS	FOCAL	4	"BOD1L1,CPEB2,NKX3-2,RAB28"
TCGA.AA.A010.01A	4	13571584	13600533	15	-0.7132	SMALL-LOSS	FOCAL	1	BOD1L1
TCGA.AA.A00N.01A	4	13610872	15034724	12	-1.0741	SMALL-LOSS	FOCAL	2	"BOD1L1,CPEB2"
TCGA.CK.5914.01A	4	13612540	15018761	10	-0.6	SMALL-LOSS	FOCAL	2	"BOD1L1,CPEB2"
TCGA.AA.A00D.01A	4	15034724	15067738	7	-0.9456	SMALL-LOSS	FOCAL	1	CPEB2
TCGA.AG.A01W.01A	4	15168034	15174030	4	-1.1402	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A54L.01A	4	15517469	16899925	109	-0.7294	SMALL-LOSS	FOCAL	10	"BST1,CC2D2A,CD38,FAM200B,FBXL5,FGFBP1,FGFBP2,LDB2,PROM1,TAPT1"
TCGA.AG.3909.01A	4	15598969	15717297	20	-1.0162	SMALL-LOSS	FOCAL	4	"BST1,CC2D2A,FAM200B,FBXL5"
TCGA.CK.5914.01A	4	15613862	15724427	21	-0.7576	SMALL-LOSS	FOCAL	3	"BST1,FAM200B,FBXL5"
TCGA.AA.A010.01A	4	15688571	15691454	2	-0.6819	SMALL-LOSS	FOCAL	1	FAM200B
TCGA.AA.A00D.01A	4	15733315	17493806	25	-0.6706	SMALL-LOSS	FOCAL	8	"BST1,CD38,FGFBP1,FGFBP2,LDB2,PROM1,QDPR,TAPT1"
TCGA.AG.4009.01A	4	16176233	16188385	4	-0.5623	SMALL-LOSS	FOCAL	1	TAPT1
TCGA.AA.A010.01A	4	16204038	17528390	21	-0.726	SMALL-LOSS	FOCAL	4	"CLRN2,LDB2,QDPR,TAPT1"
TCGA.AA.3941	4	16708177	16733469	16	-1.1259	SMALL-LOSS	FOCAL	1	LDB2
TCGA.AA.3982	4	16725591	16733469	8	-0.591	SMALL-LOSS	FOCAL	1	LDB2
TCGA.AG.4009.01A	4	17503312	17528390	6	-0.716	SMALL-LOSS	FOCAL	2	"CLRN2,QDPR"
TCGA.AA.A00N.01A	4	17503312	17636580	27	-0.6363	SMALL-LOSS	FOCAL	5	"CLRN2,FAM184B,LAP3,MED28,QDPR"
TCGA.AG.3909.01A	4	17505964	17598612	13	-0.7001	SMALL-LOSS	FOCAL	3	"CLRN2,LAP3,QDPR"
TCGA.AY.A54L.01A	4	17616240	20469359	56	-0.7392	SMALL-LOSS	FOCAL	6	"DCAF16,FAM184B,LCORL,MED28,NCAPG,SLIT2"
TCGA.CK.5914.01A	4	17706580	17825243	15	-0.6825	SMALL-LOSS	FOCAL	3	"DCAF16,FAM184B,NCAPG"
TCGA.AA.3850	4	17826255	24104178	1978	-0.58345	SMALL-LOSS	FOCAL	8	"ADGRA3,GBA3,KCNIP4,LCORL,NCAPG,PACRGL,PPARGC1A,SLIT2"
TCGA.AA.A00N.01A	4	17826539	17838735	6	-0.6897	SMALL-LOSS	FOCAL	1	NCAPG
TCGA.AA.A00D.01A	4	17887637	22463309	72	-0.719	SMALL-LOSS	FOCAL	5	"ADGRA3,KCNIP4,LCORL,PACRGL,SLIT2"
TCGA.AA.3811	4	18382211	20437017	559	-0.5295	SMALL-LOSS	FOCAL	1	SLIT2
TCGA.AG.3909.01A	4	20706069	20714384	4	-0.8037	SMALL-LOSS	FOCAL	1	PACRGL
TCGA.D5.5538	4	21469784	21602433	102	-0.6744	SMALL-LOSS	FOCAL	1	KCNIP4
TCGA.AZ.4614	4	21986451	25080087	1095	-0.8366	SMALL-LOSS	FOCAL	7	"ADGRA3,CCDC149,DHX15,GBA3,LGI2,PPARGC1A,SOD3"
TCGA.EI.6510	4	23272196	23275165	3	-0.8935	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	4	23797427	23891464	12	-0.9951	SMALL-LOSS	FOCAL	1	PPARGC1A
TCGA.AG.A01W.01A	4	24410233	24433186	4	-1.0628	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	4	24463741	24639164	10	-0.6145	SMALL-LOSS	FOCAL	1	DHX15
TCGA.AA.A00D.01A	4	24833075	24854652	6	-1.139	SMALL-LOSS	FOCAL	1	CCDC149
TCGA.AA.A00N.01A	4	25013920	25674682	70	-0.8424	SMALL-LOSS	FOCAL	6	"ANAPC4,LGI2,PI4K2B,SEPSECS,SLC34A2,ZCCHC4"
TCGA.AZ.4614	4	25085480	25440831	107	-0.7812	SMALL-LOSS	FOCAL	4	"ANAPC4,PI4K2B,SEPSECS,ZCCHC4"
TCGA.AG.3909.01A	4	25146350	25160528	6	-1.2839	SMALL-LOSS	FOCAL	1	SEPSECS
TCGA.AG.4009.01A	4	25253915	25278589	9	-0.7821	SMALL-LOSS	FOCAL	1	PI4K2B
TCGA.AG.3909.01A	4	25253915	25398236	33	-0.5456	SMALL-LOSS	FOCAL	3	"ANAPC4,PI4K2B,ZCCHC4"
TCGA.AG.A01W.01A	4	25368223	25401128	10	-0.7024	SMALL-LOSS	FOCAL	2	"ANAPC4,ZCCHC4"
TCGA.AA.3866	4	25773449	28091165	767	-0.5826	SMALL-LOSS	FOCAL	6	"CCKAR,RBPJ,SEL1L3,SMIM20,STIM2,TBC1D19"
TCGA.CK.4952.01A	4	26330747	35838434	46	-0.5884	SMALL-LOSS	FOCAL	5	"CCKAR,PCDH7,RBPJ,STIM2,TBC1D19"
TCGA.AA.3811	4	26965305	27002833	8	-1.0577	SMALL-LOSS	FOCAL	1	STIM2
TCGA.AA.A00L.01A	4	27010349	36345157	43	-0.872	SMALL-LOSS	FOCAL	4	"ARAP2,DTHD1,PCDH7,STIM2"
TCGA.AA.3850	4	27197785	27206459	8	-0.77125	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	27217721	33150242	1707	-0.71535	SMALL-LOSS	FOCAL	1	PCDH7
TCGA.AA.3941	4	27217721	33150242	1706	-0.6088	SMALL-LOSS	FOCAL	1	PCDH7
TCGA.AA.3844	4	27250046	37437060	2936	-0.5231	SMALL-LOSS	FOCAL	4	"ARAP2,DTHD1,NWD2,PCDH7"
TCGA.AA.3867	4	27531202	37111618	2663	-0.8556	SMALL-LOSS	FOCAL	3	"ARAP2,DTHD1,PCDH7"
TCGA.AG.4009.01A	4	30723014	30732293	4	-1.2386	SMALL-LOSS	FOCAL	1	PCDH7
TCGA.AA.A010.01A	4	30723014	36130118	19	-1.0723	SMALL-LOSS	FOCAL	2	"ARAP2,PCDH7"
TCGA.F4.6808	4	31688062	33903504	493	-1.0785	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4614	4	32481261	32860765	80	-0.7405	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	33158268	37516823	1269	-0.5752	SMALL-LOSS	FOCAL	4	"ARAP2,C4orf19,DTHD1,NWD2"
TCGA.AZ.4614	4	33298430	38260198	1582	-0.8091	SMALL-LOSS	FOCAL	8	"ARAP2,C4orf19,DTHD1,NWD2,PGM2,PTTG2,RELL1,TBC1D1"
TCGA.AA.3850	4	33336102	33642613	46	-0.74765	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	33644965	34417039	107	-0.60125	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	34436408	37516823	1057	-0.69885	SMALL-LOSS	FOCAL	4	"ARAP2,C4orf19,DTHD1,NWD2"
TCGA.AG.3890	4	34483315	34583864	32	-1.3076	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6652	4	35984536	36066469	37	-0.6194	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	4	36069477	36195145	27	-0.9788	SMALL-LOSS	FOCAL	1	ARAP2
TCGA.AG.3909.01A	4	37648939	37839113	5	-0.854	SMALL-LOSS	FOCAL	2	"PGM2,RELL1"
TCGA.CK.5914.01A	4	38126532	38879662	18	-0.588	SMALL-LOSS	FOCAL	6	"FAM114A1,KLF3,TBC1D1,TLR1,TLR10,TLR6"
TCGA.AA.3844	4	38776069	38777172	10	-0.8824	SMALL-LOSS	FOCAL	1	TLR10
TCGA.AA.3982	4	38776069	38777172	10	-0.8086	SMALL-LOSS	FOCAL	1	TLR10
TCGA.AA.3850	4	38776069	38778902	12	-0.64905	SMALL-LOSS	FOCAL	1	TLR10
TCGA.AA.3941	4	38776106	38778902	11	-0.8948	SMALL-LOSS	FOCAL	1	TLR10
TCGA.AG.3909.01A	4	38798060	38893310	6	-1.0451	SMALL-LOSS	FOCAL	3	"FAM114A1,TLR1,TLR6"
TCGA.AG.A01W.01A	4	39084949	39519916	44	-0.6383	SMALL-LOSS	FOCAL	7	"KLB,KLHL5,LIAS,RFC1,RPL9,UGDH,WDR19"
TCGA.CK.5914.01A	4	39187330	39201051	5	-0.6961	SMALL-LOSS	FOCAL	1	WDR19
TCGA.AA.A00D.01A	4	39290325	39352938	21	-0.856	SMALL-LOSS	FOCAL	1	RFC1
TCGA.CK.5914.01A	4	39408573	39779939	41	-0.7447	SMALL-LOSS	FOCAL	6	"KLB,LIAS,RPL9,SMIM14,UBE2K,UGDH"
TCGA.AA.A00N.01A	4	39435778	39779939	40	-0.9994	SMALL-LOSS	FOCAL	6	"KLB,LIAS,RPL9,SMIM14,UBE2K,UGDH"
TCGA.AG.3909.01A	4	39505463	39522934	9	-0.6474	SMALL-LOSS	FOCAL	1	UGDH
TCGA.AG.3909.01A	4	39747325	39827025	6	-0.7098	SMALL-LOSS	FOCAL	2	"PDS5A,UBE2K"
TCGA.CK.5914.01A	4	39978078	40133404	13	-0.5297	SMALL-LOSS	FOCAL	2	"N4BP2,PDS5A"
TCGA.AG.3909.01A	4	40119438	40133404	7	-0.5153	SMALL-LOSS	FOCAL	1	N4BP2
TCGA.AA.A00D.01A	4	40244990	40439787	10	-0.6979	SMALL-LOSS	FOCAL	3	"CHRNA9,RBM47,RHOH"
TCGA.AA.A00N.01A	4	40427883	40800756	13	-0.6234	SMALL-LOSS	FOCAL	2	"NSUN7,RBM47"
TCGA.AA.3975	4	40427989	40462193	8	-0.71	SMALL-LOSS	FOCAL	1	RBM47
TCGA.AG.3909.01A	4	40434616	40800756	12	-1.0489	SMALL-LOSS	FOCAL	2	"NSUN7,RBM47"
TCGA.AA.A00N.01A	4	41035176	41668531	25	-0.556	SMALL-LOSS	FOCAL	3	"APBB2,LIMCH1,UCHL1"
TCGA.F5.6863	4	41143475	41147776	3	-1.1513	SMALL-LOSS	FOCAL	1	APBB2
TCGA.AA.3941	4	41175413	41181160	6	-0.6626	SMALL-LOSS	FOCAL	1	APBB2
TCGA.AG.4009.01A	4	41258969	41269970	6	-0.8366	SMALL-LOSS	FOCAL	1	UCHL1
TCGA.DM.A28F	4	41399513	41531671	47	-0.7071	SMALL-LOSS	FOCAL	1	LIMCH1
TCGA.AA.A00D.01A	4	41686382	42628975	73	-0.5775	SMALL-LOSS	FOCAL	8	"ATP8A1,BEND4,DCAF4L1,LIMCH1,PHOX2B,SHISA3,SLC30A9,TMEM33"
TCGA.AA.A00L.01A	4	41689796	41946762	12	-0.892	SMALL-LOSS	FOCAL	3	"LIMCH1,PHOX2B,TMEM33"
TCGA.AA.3850	4	42453781	42459089	5	-0.92855	SMALL-LOSS	FOCAL	1	ATP8A1
TCGA.AA.3982	4	42619012	42619846	6	-0.9236	SMALL-LOSS	FOCAL	1	ATP8A1
TCGA.AA.3867	4	42688903	44167767	452	-0.7928	SMALL-LOSS	FOCAL	1	GRXCR1
TCGA.AA.3844	4	42720454	47118383	1072	-0.5504	SMALL-LOSS	FOCAL	10	"COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.AA.3685	4	43146134	43150071	8	-0.8688	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3591	4	43146134	43150071	8	-0.6216	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	4	44186826	46654230	538	-0.9192	SMALL-LOSS	FOCAL	6	"GABRA2,GABRG1,GNPDA2,GUF1,KCTD8,YIPF7"
TCGA.CK.5914.01A	4	44682416	44691271	9	-0.8424	SMALL-LOSS	FOCAL	1	GUF1
TCGA.AG.3909.01A	4	44682416	44691819	10	-1.0895	SMALL-LOSS	FOCAL	1	GUF1
TCGA.AA.A00N.01A	4	44691271	44705037	9	-0.8415	SMALL-LOSS	FOCAL	2	"GNPDA2,GUF1"
TCGA.AG.3909.01A	4	44692682	44724064	12	-0.6759	SMALL-LOSS	FOCAL	2	"GNPDA2,GUF1"
TCGA.AA.A00D.01A	4	44705037	47574108	61	-0.6043	SMALL-LOSS	FOCAL	8	"ATP10D,COMMD8,COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2"
TCGA.5M.AAT4	4	44998903	45029692	8	-0.5695	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AAT4	4	45033141	45036445	5	-1.0089	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AAT4	4	45037669	45050343	4	-0.5692	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A008.01A	4	46066423	46085965	3	-0.8243	SMALL-LOSS	FOCAL	1	GABRG1
TCGA.AG.3909.01A	4	46388044	47462112	23	-0.7454	SMALL-LOSS	FOCAL	5	"COMMD8,COX7B2,GABRA2,GABRA4,GABRB1"
TCGA.AA.A00D.01A	4	47574842	47589004	5	-1.3152	SMALL-LOSS	FOCAL	1	ATP10D
TCGA.AA.A00D.01A	4	47593012	48230503	80	-0.6338	SMALL-LOSS	FOCAL	7	"ATP10D,CNGA1,CORIN,NFXL1,NIPAL1,TEC,TXK"
TCGA.AG.A01W.01A	4	47830838	47847590	8	-0.6592	SMALL-LOSS	FOCAL	1	CORIN
TCGA.AG.A01W.01A	4	47872806	48180345	10	-0.5649	SMALL-LOSS	FOCAL	5	"CNGA1,NFXL1,NIPAL1,TEC,TXK"
TCGA.AA.A010.01A	4	48151562	48492290	22	-0.7494	SMALL-LOSS	FOCAL	4	"SLAIN2,SLC10A4,TEC,ZAR1"
TCGA.AA.A01Q.01A	4	48486901	48496101	4	-0.5839	SMALL-LOSS	FOCAL	2	"SLC10A4,ZAR1"
TCGA.AG.4009.01A	4	48486901	48503599	7	-1.0799	SMALL-LOSS	FOCAL	3	"FRYL,SLC10A4,ZAR1"
TCGA.CK.5914.01A	4	48486901	48507497	10	-0.8064	SMALL-LOSS	FOCAL	3	"FRYL,SLC10A4,ZAR1"
TCGA.AG.3909.01A	4	48490452	48512832	10	-0.8548	SMALL-LOSS	FOCAL	3	"FRYL,SLC10A4,ZAR1"
TCGA.AG.4009.01A	4	48504757	48523036	7	-0.5739	SMALL-LOSS	FOCAL	1	FRYL
TCGA.AA.A010.01A	4	48523036	48543992	11	-0.7079	SMALL-LOSS	FOCAL	1	FRYL
TCGA.AA.A00N.01A	4	48887445	49009196	14	-1.1626	SMALL-LOSS	FOCAL	2	"CWH43,OCIAD2"
TCGA.AG.3909.01A	4	48894742	48996609	9	-0.9978	SMALL-LOSS	FOCAL	2	"CWH43,OCIAD2"
TCGA.CK.5914.01A	4	48899759	48993911	7	-0.7819	SMALL-LOSS	FOCAL	2	"CWH43,OCIAD2"
TCGA.AA.A010.01A	4	52869340	52928374	11	-0.9097	SMALL-LOSS	FOCAL	3	"LRRC66,SGCB,SPATA18"
TCGA.AG.4009.01A	4	52883232	52928374	10	-0.7082	SMALL-LOSS	FOCAL	3	"LRRC66,SGCB,SPATA18"
TCGA.AG.3909.01A	4	52894087	52935948	9	-1.1053	SMALL-LOSS	FOCAL	2	"SGCB,SPATA18"
TCGA.D5.6533	4	53112031	53115605	5	-0.8832	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	53522370	54265880	24	-0.8324	SMALL-LOSS	FOCAL	5	"ERVMER34-1,FIP1L1,RASL11B,SCFD2,USP46"
TCGA.AG.4009.01A	4	53729367	53740135	4	-0.7194	SMALL-LOSS	FOCAL	2	"RASL11B,SCFD2"
TCGA.AG.3909.01A	4	53729367	54257534	19	-0.9052	SMALL-LOSS	FOCAL	3	"FIP1L1,RASL11B,SCFD2"
TCGA.CM.6172	4	53794838	55525832	580	-0.5257	SMALL-LOSS	FOCAL	7	"CHIC2,FIP1L1,GSX2,KIT,LNX1,PDGFRA,SCFD2"
TCGA.AA.A00D.01A	4	54294147	56348888	120	-0.6976	SMALL-LOSS	FOCAL	10	"CHIC2,CLOCK,FIP1L1,GSX2,KDR,KIT,LNX1,PDGFRA,SRD5A3,TMEM165"
TCGA.AG.3909.01A	4	54915095	54967722	3	-1.243	SMALL-LOSS	FOCAL	2	"CHIC2,GSX2"
TCGA.AA.A02H.01A	4	54915095	55124862	4	-1.0981	SMALL-LOSS	FOCAL	3	"CHIC2,GSX2,PDGFRA"
TCGA.AG.3611.01A	4	55946069	55991329	29	-0.7274	SMALL-LOSS	FOCAL	1	KDR
TCGA.AG.3909.01A	4	55979430	55987212	6	-1.0759	SMALL-LOSS	FOCAL	1	KDR
TCGA.CK.5914.01A	4	56422697	56458187	6	-0.5924	SMALL-LOSS	FOCAL	1	PDCL2
TCGA.AA.A00N.01A	4	56422697	56496501	13	-0.6336	SMALL-LOSS	FOCAL	2	"NMU,PDCL2"
TCGA.AG.3909.01A	4	56422697	56730381	15	-0.5707	SMALL-LOSS	FOCAL	3	"EXOC1,NMU,PDCL2"
TCGA.CK.5914.01A	4	56465287	56726570	9	-1.0993	SMALL-LOSS	FOCAL	2	"EXOC1,NMU"
TCGA.AA.3867	4	56606620	56608378	3	-1.0325	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	4	56696442	56702298	4	-1.1115	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	56818246	56831798	7	-0.8517	SMALL-LOSS	FOCAL	1	CEP135
TCGA.CK.5914.01A	4	56818246	56831798	7	-0.9311	SMALL-LOSS	FOCAL	1	CEP135
TCGA.AA.3844	4	57092645	57097779	4	-0.9497	SMALL-LOSS	FOCAL	1	KIAA1211
TCGA.CK.5914.01A	4	57173661	57179341	3	-0.8168	SMALL-LOSS	FOCAL	1	KIAA1211
TCGA.AG.3909.01A	4	57176765	57190220	5	-1.1006	SMALL-LOSS	FOCAL	1	KIAA1211
TCGA.AG.3909.01A	4	57301474	57361440	21	-1.0158	SMALL-LOSS	FOCAL	3	"PAICS,PPAT,SRP72"
TCGA.AA.A00N.01A	4	57307842	57871754	55	-1.147	SMALL-LOSS	FOCAL	9	"ARL9,HOPX,NOA1,PAICS,POLR2B,REST,SPINK2,SRP72,THEGL"
TCGA.AG.A01W.01A	4	57524387	57529281	4	-1.283	SMALL-LOSS	FOCAL	1	HOPX
TCGA.AG.A01W.01A	4	57551635	57576379	10	-0.8295	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	4	57776847	57865733	17	-0.5748	SMALL-LOSS	FOCAL	3	"NOA1,POLR2B,REST"
TCGA.AA.A02H.01A	4	57829589	57839977	6	-1.3016	SMALL-LOSS	FOCAL	1	NOA1
TCGA.AG.3909.01A	4	57839337	57860532	7	-1.2056	SMALL-LOSS	FOCAL	2	"NOA1,POLR2B"
TCGA.AA.A02H.01A	4	57842566	57876479	11	-0.5366	SMALL-LOSS	FOCAL	2	"NOA1,POLR2B"
TCGA.AG.A014.01A	4	57906943	67142491	53	-0.6063	SMALL-LOSS	FOCAL	4	"ADGRL3,EPHA5,IGFBP7,TECRL"
TCGA.AA.3982	4	58073141	58075892	3	-1.196	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	58565439	68207162	2652	-0.85385	SMALL-LOSS	FOCAL	3	"ADGRL3,EPHA5,TECRL"
TCGA.AA.3941	4	58566387	58784131	97	-0.9869	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	4	58589378	58591562	7	-0.9281	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	4	58589378	68159784	2621	-0.6352	SMALL-LOSS	FOCAL	3	"ADGRL3,EPHA5,TECRL"
TCGA.AA.3941	4	58796082	59812128	271	-0.6314	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6923	4	59325251	59367138	8	-0.757	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	59825655	60531375	213	-0.8549	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3732	4	60022094	61115697	301	-0.5699	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	4	60531375	67733484	1901	-0.6369	SMALL-LOSS	FOCAL	3	"ADGRL3,EPHA5,TECRL"
TCGA.AA.3941	4	60591002	61412807	231	-0.5709	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	61429371	63774464	548	-0.5359	SMALL-LOSS	FOCAL	1	ADGRL3
TCGA.G4.6322	4	62161960	62255221	19	-0.7301	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	4	62935809	65240814	12	-0.5773	SMALL-LOSS	FOCAL	2	"ADGRL3,TECRL"
TCGA.AA.3941	4	63819418	68049002	1179	-0.7914	SMALL-LOSS	FOCAL	2	"EPHA5,TECRL"
TCGA.AA.A01Z	4	64126428	64158621	9	-0.9616	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6931	4	64141277	64151912	3	-1.0622	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D9	4	64141277	64151912	3	-1.0529	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	4	65274829	66467338	17	-0.9802	SMALL-LOSS	FOCAL	2	"EPHA5,TECRL"
TCGA.AA.A00D.01A	4	65274829	66509033	18	-0.9922	SMALL-LOSS	FOCAL	2	"EPHA5,TECRL"
TCGA.AY.4070	4	66136814	66678436	197	-0.8156	SMALL-LOSS	FOCAL	1	EPHA5
TCGA.CK.5914.01A	4	68405509	68409811	3	-0.9058	SMALL-LOSS	FOCAL	1	CENPC
TCGA.AG.4009.01A	4	68484663	68489802	4	-0.5608	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AG.3909.01A	4	68488500	68496118	7	-0.708	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AA.A00N.01A	4	68488806	68492031	4	-0.6695	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AG.4009.01A	4	68490664	68506811	9	-0.9881	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AA.A00L.01A	4	68490664	68510356	11	-1.1515	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AA.A01Q.01A	4	68492031	68512389	12	-0.5609	SMALL-LOSS	FOCAL	1	UBA6
TCGA.CK.5914.01A	4	68494726	68514734	12	-0.9392	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AA.A00N.01A	4	68510356	68514734	4	-0.8081	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AG.4009.01A	4	68510356	68536166	10	-0.5151	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AG.3909.01A	4	68510356	68562328	16	-0.564	SMALL-LOSS	FOCAL	1	UBA6
TCGA.AG.3611.01A	4	68784669	68788445	2	-0.8187	SMALL-LOSS	FOCAL	1	TMPRSS11A
TCGA.AG.A008.01A	4	69403342	69433457	6	-0.8667	SMALL-LOSS	FOCAL	1	UGT2B17
TCGA.AG.A011.01A	4	69403342	69433457	6	-0.8618	SMALL-LOSS	FOCAL	1	UGT2B17
TCGA.AG.3909.01A	4	69962191	69978333	8	-0.8588	SMALL-LOSS	FOCAL	1	UGT2B7
TCGA.AA.A00N.01A	4	70592754	70620746	7	-0.854	SMALL-LOSS	FOCAL	1	SULT1B1
TCGA.AG.4009.01A	4	70615387	70620746	3	-0.6862	SMALL-LOSS	FOCAL	1	SULT1B1
TCGA.CK.5914.01A	4	70615387	70620746	3	-1.2617	SMALL-LOSS	FOCAL	1	SULT1B1
TCGA.AA.A02K.01A	4	70805724	70807672	3	-0.807	SMALL-LOSS	FOCAL	1	CSN1S1
TCGA.AA.3815.01A	4	70805724	70807684	3	-1.2364	SMALL-LOSS	FOCAL	1	CSN1S1
TCGA.AA.A00N.01A	4	70896387	70920017	5	-1.0974	SMALL-LOSS	FOCAL	2	"HTN1,HTN3"
TCGA.RU.A8FL	4	71372579	71372622	3	-0.581	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	4	71468304	71835598	48	-0.8245	SMALL-LOSS	FOCAL	7	"AMBN,ENAM,GRSF1,JCHAIN,MOB1B,RUFY3,UTP3"
TCGA.AA.A00N.01A	4	71689974	71863743	16	-0.9743	SMALL-LOSS	FOCAL	3	"DCK,GRSF1,MOB1B"
TCGA.CK.5914.01A	4	71689974	71894982	21	-0.6566	SMALL-LOSS	FOCAL	3	"DCK,GRSF1,MOB1B"
TCGA.AG.4009.01A	4	71690965	71701858	7	-0.5586	SMALL-LOSS	FOCAL	1	GRSF1
TCGA.AA.A01C.01A	4	71690965	71889229	16	-0.6364	SMALL-LOSS	FOCAL	3	"DCK,GRSF1,MOB1B"
TCGA.AG.3909.01A	4	71691792	71894982	18	-0.6184	SMALL-LOSS	FOCAL	3	"DCK,GRSF1,MOB1B"
TCGA.AA.A00L.01A	4	71894982	73434384	61	-0.7835	SMALL-LOSS	FOCAL	5	"ADAMTS3,DCK,GC,NPFFR2,SLC4A4"
TCGA.AF.6672	4	72108592	72115667	4	-0.5271	SMALL-LOSS	FOCAL	1	SLC4A4
TCGA.AA.A00D.01A	4	72204935	73414148	58	-0.8646	SMALL-LOSS	FOCAL	4	"ADAMTS3,GC,NPFFR2,SLC4A4"
TCGA.AA.A00N.01A	4	73414148	73950919	14	-0.6117	SMALL-LOSS	FOCAL	3	"ADAMTS3,ANKRD17,COX18"
TCGA.AG.3909.01A	4	73433008	73950919	12	-0.862	SMALL-LOSS	FOCAL	3	"ADAMTS3,ANKRD17,COX18"
TCGA.CK.5914.01A	4	73433008	73968046	19	-0.6457	SMALL-LOSS	FOCAL	3	"ADAMTS3,ANKRD17,COX18"
TCGA.AA.3930.01A	4	73984368	74008307	11	-1.1898	SMALL-LOSS	FOCAL	1	ANKRD17
TCGA.AA.A02F.01A	4	74012434	74354295	45	-1.091	SMALL-LOSS	FOCAL	4	"AFM,AFP,ALB,ANKRD17"
TCGA.AA.A02F.01A	4	74357560	74713992	24	-0.5955	SMALL-LOSS	FOCAL	4	"AFM,CXCL6,CXCL8,RASSF6"
TCGA.AG.A01W.01A	4	74566300	74573160	7	-0.8695	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	4	74702684	74863679	16	-0.555	SMALL-LOSS	FOCAL	6	"CXCL1,CXCL5,CXCL6,PF4,PF4V1,PPBP"
TCGA.AG.3909.01A	4	74702684	74963394	19	-0.9422	SMALL-LOSS	FOCAL	8	"CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,PF4,PF4V1,PPBP"
TCGA.AG.4009.01A	4	74902898	74964270	4	-1.2533	SMALL-LOSS	FOCAL	2	"CXCL2,CXCL3"
TCGA.AA.A01F.01A	4	74963394	74964270	2	-1.0612	SMALL-LOSS	FOCAL	1	CXCL2
TCGA.AA.A010.01A	4	75023817	75174741	10	-0.9872	SMALL-LOSS	FOCAL	2	"EPGN,MTHFD2L"
TCGA.AG.3909.01A	4	75245132	75484473	9	-1.3181	SMALL-LOSS	FOCAL	2	"AREG,EREG"
TCGA.CK.5914.01A	4	75245132	75675741	12	-0.5813	SMALL-LOSS	FOCAL	3	"AREG,BTC,EREG"
TCGA.AG.A011.01A	4	75481964	75485837	3	-0.9209	SMALL-LOSS	FOCAL	1	AREG
TCGA.CK.5914.01A	4	76433989	76550996	19	-0.9422	SMALL-LOSS	FOCAL	4	"C4orf26,CDKL2,RCHY1,THAP6"
TCGA.A6.3808.01A	4	76523214	76807928	48	-0.9139	SMALL-LOSS	FOCAL	4	"CDKL2,G3BP2,PPEF2,USO1"
TCGA.AG.A01W.01A	4	76700254	76744434	7	-0.8423	SMALL-LOSS	FOCAL	1	USO1
TCGA.AA.A00N.01A	4	77177299	77246958	12	-0.829	SMALL-LOSS	FOCAL	4	"CCDC158,FAM47E,FAM47E-STBD1,STBD1"
TCGA.AG.4009.01A	4	77631257	77816599	13	-0.6601	SMALL-LOSS	FOCAL	2	"SHROOM3,SOWAHB"
TCGA.AY.A71X	4	77724966	77725090	3	-1.0441	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	4	77976266	78082582	9	-0.8004	SMALL-LOSS	FOCAL	2	"CCNG2,CCNI"
TCGA.AG.4009.01A	4	77979618	78085423	7	-0.6698	SMALL-LOSS	FOCAL	2	"CCNG2,CCNI"
TCGA.AG.3909.01A	4	77987355	78086917	7	-1.2874	SMALL-LOSS	FOCAL	2	"CCNG2,CCNI"
TCGA.CK.5914.01A	4	77987355	78086917	7	-1.0124	SMALL-LOSS	FOCAL	2	"CCNG2,CCNI"
TCGA.CK.5914.01A	4	79353480	79367859	6	-0.6095	SMALL-LOSS	FOCAL	1	FRAS1
TCGA.AA.A00N.01A	4	79442626	79500142	10	-0.9496	SMALL-LOSS	FOCAL	2	"ANXA3,FRAS1"
TCGA.AA.3941	4	79674394	82095610	578	-0.528	SMALL-LOSS	FOCAL	10	"ANTXR2,BMP2K,BMP3,C4orf22,FGF5,GK2,NAA11,PAQR3,PRDM8,PRKG2"
TCGA.AA.3850	4	79674394	82134735	586	-0.62835	SMALL-LOSS	FOCAL	10	"ANTXR2,BMP2K,BMP3,C4orf22,FGF5,GK2,NAA11,PAQR3,PRDM8,PRKG2"
TCGA.D5.6932	4	80552198	80928451	109	-0.6716	SMALL-LOSS	FOCAL	1	ANTXR2
TCGA.AG.3909.01A	4	80990549	81207462	9	-1.0656	SMALL-LOSS	FOCAL	3	"ANTXR2,FGF5,PRDM8"
TCGA.CK.5914.01A	4	80990549	81256872	10	-0.8065	SMALL-LOSS	FOCAL	3	"ANTXR2,FGF5,PRDM8"
TCGA.F4.6808	4	81252718	83792497	781	-0.6379	SMALL-LOSS	FOCAL	10	"BMP3,C4orf22,ENOPH1,HNRNPD,HNRNPDL,PRKG2,RASGEF1B,SCD5,SEC31A,TMEM150C"
TCGA.AG.3909.01A	4	82377758	83294568	10	-0.636	SMALL-LOSS	FOCAL	2	"HNRNPD,RASGEF1B"
TCGA.AG.3902	4	83044474	83044781	4	-0.779	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	4	83821895	83828911	4	-0.8518	SMALL-LOSS	FOCAL	1	THAP9
TCGA.AA.A01S	4	83831519	84329198	131	-0.93135	SMALL-LOSS	FOCAL	7	"COPS4,COQ2,HELQ,HPSE,LIN54,PLAC8,THAP9"
TCGA.AA.A00N.01A	4	84015818	84243321	21	-0.7272	SMALL-LOSS	FOCAL	3	"COQ2,HPSE,PLAC8"
TCGA.AA.3850	4	84601411	87629936	868	-0.53805	SMALL-LOSS	FOCAL	6	"ARHGAP24,CDS1,MAPK10,NKX6-1,PTPN13,WDFY3"
TCGA.AA.3941	4	84733571	84957197	108	-0.5836	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	4	85414412	85416828	2	-1.2323	SMALL-LOSS	FOCAL	1	NKX6-1
TCGA.CK.5914.01A	4	85612752	85630384	9	-0.8397	SMALL-LOSS	FOCAL	1	WDFY3
TCGA.AA.3930.01A	4	85695925	85724396	12	-1.165	SMALL-LOSS	FOCAL	1	WDFY3
TCGA.AA.A01Z	4	86494984	86510267	10	-0.7499	SMALL-LOSS	FOCAL	1	ARHGAP24
TCGA.EI.6508	4	86494984	86569674	36	-0.8406	SMALL-LOSS	FOCAL	1	ARHGAP24
TCGA.AA.A00N.01A	4	86938340	86952456	3	-1.2576	SMALL-LOSS	FOCAL	1	MAPK10
TCGA.AG.3909.01A	4	86938340	87010298	6	-0.591	SMALL-LOSS	FOCAL	1	MAPK10
TCGA.CK.5914.01A	4	88226319	88311972	14	-0.7083	SMALL-LOSS	FOCAL	2	"HSD17B11,HSD17B13"
TCGA.AG.3909.01A	4	88293830	88311972	4	-0.8912	SMALL-LOSS	FOCAL	1	HSD17B11
TCGA.AA.3850	4	88510557	88534234	6	-1.26595	SMALL-LOSS	FOCAL	1	DSPP
TCGA.CK.5914.01A	4	88577585	88583082	4	-0.5413	SMALL-LOSS	FOCAL	1	DMP1
TCGA.AA.A010.01A	4	88723442	88967766	20	-0.8041	SMALL-LOSS	FOCAL	4	"IBSP,MEPE,PKD2,SPP1"
TCGA.AA.A00N.01A	4	88755837	88940578	12	-0.682	SMALL-LOSS	FOCAL	3	"MEPE,PKD2,SPP1"
TCGA.CK.5914.01A	4	88767092	88940578	7	-0.6253	SMALL-LOSS	FOCAL	3	"MEPE,PKD2,SPP1"
TCGA.AA.A00N.01A	4	89053671	89306590	11	-0.7985	SMALL-LOSS	FOCAL	3	"ABCG2,HERC6,PPM1K"
TCGA.AG.3909.01A	4	89183700	89306590	8	-0.7731	SMALL-LOSS	FOCAL	2	"HERC6,PPM1K"
TCGA.AA.A00N.01A	4	89356867	89361061	4	-0.6636	SMALL-LOSS	FOCAL	1	HERC6
TCGA.CK.5914.01A	4	89361061	89393508	12	-0.8549	SMALL-LOSS	FOCAL	2	"HERC5,HERC6"
TCGA.AG.3909.01A	4	89380459	89393508	10	-0.9108	SMALL-LOSS	FOCAL	1	HERC5
TCGA.AA.A00L.01A	4	89576313	94750881	82	-0.6914	SMALL-LOSS	FOCAL	10	"ATOH1,CCSER1,FAM13A,GPRIN3,GRID2,HERC3,MMRN1,NAP1L5,SNCA,TIGD2"
TCGA.AG.A016.01A	4	89607822	89627852	6	-0.8897	SMALL-LOSS	FOCAL	2	"HERC3,NAP1L5"
TCGA.AA.3941	4	90819673	94573589	794	-0.6423	SMALL-LOSS	FOCAL	3	"CCSER1,GRID2,MMRN1"
TCGA.3L.AA1B	4	90862942	91410242	129	-0.5572	SMALL-LOSS	FOCAL	2	"CCSER1,MMRN1"
TCGA.D5.6932	4	90954549	91822310	203	-0.5934	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.A6.2683	4	91039782	91767860	174	-1.0507	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.A6.2678	4	91224163	91693755	116	-0.6157	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AA.A02K.01A	4	91229430	91389339	4	-0.6074	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.CM.4744.01A	4	91229439	91645017	6	-0.5992	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AG.3902	4	91254517	91481270	52	-0.5244	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AY.5543	4	91257532	91396785	35	-0.6554	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.D5.6923	4	91287203	91291515	5	-1.1545	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.EI.6508	4	91291406	92112062	201	-0.6832	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.DY.A1DD	4	91294367	91672349	80	-0.8059	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.D5.6535	4	91360795	91721939	87	-1.0175	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AG.3893	4	91427263	91553675	32	-0.5845	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.DM.A0XD	4	91504237	91941941	122	-1.0106	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.5M.AAT4	4	91567111	92054562	133	-0.9378	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AA.3982	4	91573595	91996009	116	-1.074	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.DM.A28F	4	91615594	92011509	107	-1.1884	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AA.3715	4	91615594	92037950	116	-0.7582	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AF.3911	4	91619920	91978447	96	-1.1103	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.DC.6682	4	91647045	91950487	90	-0.5734	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AA.3529	4	91672349	91966318	85	-1.1473	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AY.A8YK	4	91693772	91861594	38	-1.0941	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.DM.A1D8	4	91740715	91904115	44	-1.0011	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.F4.6460	4	91782569	97163463	1433	-0.7451	SMALL-LOSS	FOCAL	9	"ATOH1,BMPR1B,CCSER1,GRID2,HPGDS,PDHA2,PDLIM5,SMARCAD1,UNC5C"
TCGA.A6.6780	4	91822646	91939238	38	-0.7679	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.EF.5830	4	91978447	92181407	49	-0.8944	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.DC.6682	4	91980148	92056787	21	-0.6672	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AA.3877	4	92093823	92365315	65	-0.6469	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.AF.3913	4	92240924	92392151	48	-0.7302	SMALL-LOSS	FOCAL	1	CCSER1
TCGA.QG.A5YX	4	94014155	95551966	373	-0.8367	SMALL-LOSS	FOCAL	5	"ATOH1,GRID2,HPGDS,PDLIM5,SMARCAD1"
TCGA.CK.4951	4	95905448	96447503	274	-0.625	SMALL-LOSS	FOCAL	2	"BMPR1B,UNC5C"
TCGA.AA.3941	4	96387272	98575398	563	-0.8433	SMALL-LOSS	FOCAL	3	"PDHA2,STPG2,UNC5C"
TCGA.CK.4951	4	97125027	98988718	341	-0.5881	SMALL-LOSS	FOCAL	1	STPG2
TCGA.F4.6808	4	97763557	98547716	161	-0.5614	SMALL-LOSS	FOCAL	1	STPG2
TCGA.AA.A00N.01A	4	99993490	100006219	7	-0.9658	SMALL-LOSS	FOCAL	1	ADH5
TCGA.AG.3909.01A	4	100803090	101110995	22	-0.6405	SMALL-LOSS	FOCAL	4	"DDIT4L,DNAJB14,H2AFZ,LAMTOR3"
TCGA.CK.5914.01A	4	100805179	100826727	8	-0.6906	SMALL-LOSS	FOCAL	2	"DNAJB14,LAMTOR3"
TCGA.AG.4009.01A	4	100805179	100870761	18	-0.8689	SMALL-LOSS	FOCAL	3	"DNAJB14,H2AFZ,LAMTOR3"
TCGA.AA.3930.01A	4	100867567	100871225	6	-1.2354	SMALL-LOSS	FOCAL	2	"DNAJB14,H2AFZ"
TCGA.CK.5914.01A	4	100869560	101108806	6	-0.9253	SMALL-LOSS	FOCAL	2	"DDIT4L,H2AFZ"
TCGA.AA.3941	4	103020803	103074465	17	-0.7095	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	4	103747552	103806326	4	-1.2143	SMALL-LOSS	FOCAL	3	"CISD2,SLC9B1,UBE2D3"
TCGA.CK.5914.01A	4	103978911	104013727	10	-0.5639	SMALL-LOSS	FOCAL	2	"BDH2,SLC9B2"
TCGA.AG.3909.01A	4	103987457	104007569	7	-1.1828	SMALL-LOSS	FOCAL	2	"BDH2,SLC9B2"
TCGA.AA.A00N.01A	4	103987457	104017289	11	-0.9752	SMALL-LOSS	FOCAL	2	"BDH2,SLC9B2"
TCGA.AA.A00Q.01A	4	103987457	104510850	58	-0.9404	SMALL-LOSS	FOCAL	4	"BDH2,CENPE,SLC9B2,TACR3"
TCGA.AA.A00L.01A	4	104031933	105411871	51	-0.9806	SMALL-LOSS	FOCAL	3	"CENPE,CXXC4,TACR3"
TCGA.AA.A00A.01A	4	104037686	104084282	27	-1.0948	SMALL-LOSS	FOCAL	1	CENPE
TCGA.AA.A00N.01A	4	104102477	104117865	9	-1.2766	SMALL-LOSS	FOCAL	1	CENPE
TCGA.AG.3909.01A	4	104106906	104117865	6	-1.1123	SMALL-LOSS	FOCAL	1	CENPE
TCGA.CK.5914.01A	4	104115320	104117865	5	-1.1413	SMALL-LOSS	FOCAL	1	CENPE
TCGA.AG.A01W.01A	4	104283807	104299229	12	-0.58	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	104679434	105876529	258	-0.8557	SMALL-LOSS	FOCAL	1	CXXC4
TCGA.EI.6508	4	106821577	106889489	13	-0.6677	SMALL-LOSS	FOCAL	1	NPNT
TCGA.CK.5914.01A	4	107169336	107257975	14	-0.5411	SMALL-LOSS	FOCAL	2	"AIMP1,TBCK"
TCGA.AG.4009.01A	4	107229925	107268655	7	-0.8991	SMALL-LOSS	FOCAL	2	"AIMP1,TBCK"
TCGA.AG.3909.01A	4	107246095	107257975	5	-1.1086	SMALL-LOSS	FOCAL	1	AIMP1
TCGA.AG.A02N	4	107864810	108615661	221	-0.7025	SMALL-LOSS	FOCAL	2	"DKK2,PAPSS1"
TCGA.AA.3941	4	108116750	108393344	91	-0.5997	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	108866097	108871360	4	-0.8261	SMALL-LOSS	FOCAL	1	CYP2U1
TCGA.AA.3861.01A	4	108940647	109822213	65	-0.7023	SMALL-LOSS	FOCAL	6	"COL25A1,ETNPPL,HADH,LEF1,OSTC,RPL34"
TCGA.AA.A00N.01A	4	108984703	109088664	11	-1.2798	SMALL-LOSS	FOCAL	1	LEF1
TCGA.AG.3909.01A	4	108984703	109088664	11	-1.1437	SMALL-LOSS	FOCAL	1	LEF1
TCGA.CK.5914.01A	4	108984703	109088664	11	-0.867	SMALL-LOSS	FOCAL	1	LEF1
TCGA.AG.4009.01A	4	109084676	109088664	3	-1.1428	SMALL-LOSS	FOCAL	1	LEF1
TCGA.CK.5914.01A	4	109663593	109681316	12	-1.0631	SMALL-LOSS	FOCAL	1	ETNPPL
TCGA.AA.A00N.01A	4	109663593	109683881	13	-1.0719	SMALL-LOSS	FOCAL	1	ETNPPL
TCGA.AA.3844	4	110101175	110166731	19	-0.6225	SMALL-LOSS	FOCAL	1	COL25A1
TCGA.A6.3808.01A	4	110441475	110681409	39	-0.7596	SMALL-LOSS	FOCAL	5	"CASP6,CCDC109B,CFI,PLA2G12A,SEC24B"
TCGA.AA.A00N.01A	4	110454699	110667331	24	-1.3103	SMALL-LOSS	FOCAL	5	"CASP6,CCDC109B,CFI,PLA2G12A,SEC24B"
TCGA.CK.5914.01A	4	110603691	110619381	10	-1.2967	SMALL-LOSS	FOCAL	2	"CASP6,CCDC109B"
TCGA.AG.4009.01A	4	110635492	110650727	4	-0.8587	SMALL-LOSS	FOCAL	1	PLA2G12A
TCGA.AZ.4308	4	110686412	110892624	72	-0.8933	SMALL-LOSS	FOCAL	5	"CFI,EGF,GAR1,LRIT3,RRH"
TCGA.AA.3850	4	111463707	112405006	253	-0.83125	SMALL-LOSS	FOCAL	2	"ENPEP,PITX2"
TCGA.AG.4009.01A	4	111539309	111554030	4	-0.5721	SMALL-LOSS	FOCAL	1	PITX2
TCGA.AG.3909.01A	4	111539309	113186108	12	-0.7155	SMALL-LOSS	FOCAL	3	"AP1AR,C4orf32,PITX2"
TCGA.AA.A00N.01A	4	111539309	113303522	20	-0.7018	SMALL-LOSS	FOCAL	5	"ALPK1,AP1AR,C4orf32,PITX2,TIFA"
TCGA.AA.3941	4	111663477	112419558	211	-0.6798	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	4	112217809	112227460	4	-1.1659	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	113186836	113303522	6	-1.0683	SMALL-LOSS	FOCAL	3	"ALPK1,AP1AR,TIFA"
TCGA.AA.A010.01A	4	113435773	113462268	5	-1.2828	SMALL-LOSS	FOCAL	2	"NEUROG2,ZGRF1"
TCGA.AA.A00N.01A	4	113435773	113506646	16	-0.8056	SMALL-LOSS	FOCAL	2	"NEUROG2,ZGRF1"
TCGA.AG.3909.01A	4	113435773	113506646	15	-0.8291	SMALL-LOSS	FOCAL	2	"NEUROG2,ZGRF1"
TCGA.CK.5914.01A	4	113468404	113484238	8	-0.7792	SMALL-LOSS	FOCAL	1	ZGRF1
TCGA.AG.A01W.01A	4	113907303	114314975	15	-0.7262	SMALL-LOSS	FOCAL	1	ANK2
TCGA.AA.3982	4	113933567	113965543	24	-0.6684	SMALL-LOSS	FOCAL	1	ANK2
TCGA.AA.3982	4	114017351	114024091	13	-0.7927	SMALL-LOSS	FOCAL	1	ANK2
TCGA.AA.3850	4	114600890	117861923	798	-0.80765	SMALL-LOSS	FOCAL	4	"ARSJ,CAMK2D,NDST4,UGT8"
TCGA.AA.3941	4	115188500	119146658	992	-0.7578	SMALL-LOSS	FOCAL	4	"NDST3,NDST4,TRAM1L1,UGT8"
TCGA.AA.3844	4	115667517	119022642	824	-0.6138	SMALL-LOSS	FOCAL	3	"NDST3,NDST4,TRAM1L1"
TCGA.AA.A01S	4	116505743	116914551	81	-0.87445	SMALL-LOSS	FOCAL	0	None
TCGA.QG.A5YX	4	117161847	119956088	742	-0.8895	SMALL-LOSS	FOCAL	6	"METTL14,NDST3,PRSS12,SEC24D,SYNPO2,TRAM1L1"
TCGA.AA.3850	4	117867880	119146658	367	-0.94105	SMALL-LOSS	FOCAL	2	"NDST3,TRAM1L1"
TCGA.D5.6538	4	118667403	120314880	435	-0.5277	SMALL-LOSS	FOCAL	9	"C4orf3,FABP2,METTL14,MYOZ2,NDST3,PRSS12,SEC24D,SYNPO2,USP53"
TCGA.AA.A010.01A	4	119158154	119259279	17	-0.7832	SMALL-LOSS	FOCAL	2	"NDST3,PRSS12"
TCGA.F5.6863	4	119266963	120869740	417	-0.6262	SMALL-LOSS	FOCAL	9	"C4orf3,FABP2,METTL14,MYOZ2,PDE5A,PRSS12,SEC24D,SYNPO2,USP53"
TCGA.AA.A010.01A	4	119666050	119754682	13	-0.9631	SMALL-LOSS	FOCAL	1	SEC24D
TCGA.AG.4009.01A	4	119718811	119754682	7	-0.8936	SMALL-LOSS	FOCAL	1	SEC24D
TCGA.AG.3731	4	120005065	120007949	3	-0.5168	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	4	120177384	120243125	17	-0.8372	SMALL-LOSS	FOCAL	3	"C4orf3,FABP2,USP53"
TCGA.AA.A010.01A	4	120419724	120423687	3	-1.0131	SMALL-LOSS	FOCAL	1	PDE5A
TCGA.AA.3850	4	121272794	121604433	118	-1.07445	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	121702266	121828570	11	-0.653	SMALL-LOSS	FOCAL	1	PRDM5
TCGA.AG.3909.01A	4	121719433	121828570	9	-0.5976	SMALL-LOSS	FOCAL	1	PRDM5
TCGA.AA.A010.01A	4	122589555	122607389	11	-1.2818	SMALL-LOSS	FOCAL	1	ANXA5
TCGA.AA.A00N.01A	4	122591041	122682644	12	-0.9434	SMALL-LOSS	FOCAL	2	"ANXA5,TMEM155"
TCGA.AG.4009.01A	4	122602773	122682644	7	-0.8001	SMALL-LOSS	FOCAL	2	"ANXA5,TMEM155"
TCGA.AG.3909.01A	4	122605780	122760722	29	-0.8609	SMALL-LOSS	FOCAL	5	"ANXA5,BBS7,CCNA2,EXOSC9,TMEM155"
TCGA.CK.5914.01A	4	122607389	122756251	27	-0.8393	SMALL-LOSS	FOCAL	5	"ANXA5,BBS7,CCNA2,EXOSC9,TMEM155"
TCGA.AA.A01S	4	122725529	123231132	88	-0.94735	SMALL-LOSS	FOCAL	5	"BBS7,CCNA2,EXOSC9,KIAA1109,TRPC3"
TCGA.AA.A00N.01A	4	122728640	122760722	20	-1.1827	SMALL-LOSS	FOCAL	3	"BBS7,CCNA2,EXOSC9"
TCGA.AG.A014.01A	4	122768527	122789071	9	-0.6972	SMALL-LOSS	FOCAL	1	BBS7
TCGA.AG.A014.01A	4	123111095	123147812	15	-0.7488	SMALL-LOSS	FOCAL	1	KIAA1109
TCGA.AA.A010.01A	4	123222437	123277729	32	-0.7056	SMALL-LOSS	FOCAL	1	KIAA1109
TCGA.AA.3930.01A	4	123234726	123249230	9	-1.1194	SMALL-LOSS	FOCAL	1	KIAA1109
TCGA.AA.3930.01A	4	123252513	125599804	68	-0.6909	SMALL-LOSS	FOCAL	10	"ADAD1,ANKRD50,BBS12,FGF2,IL2,IL21,KIAA1109,NUDT6,SPATA5,SPRY1"
TCGA.CK.5914.01A	4	123533842	123856822	20	-1.0016	SMALL-LOSS	FOCAL	5	"BBS12,FGF2,IL21,NUDT6,SPATA5"
TCGA.AG.3909.01A	4	123818729	123949300	15	-0.6554	SMALL-LOSS	FOCAL	3	"FGF2,NUDT6,SPATA5"
TCGA.AG.3909.01A	4	124322750	126241210	9	-1.2717	SMALL-LOSS	FOCAL	3	"ANKRD50,FAT4,SPRY1"
TCGA.AA.3941	4	124890765	128401322	950	-0.6511	SMALL-LOSS	FOCAL	2	"ANKRD50,FAT4"
TCGA.AA.3850	4	124974956	128372207	931	-0.82155	SMALL-LOSS	FOCAL	2	"ANKRD50,FAT4"
TCGA.AZ.4616	4	125066323	129278649	1014	-0.81	SMALL-LOSS	FOCAL	10	"ANKRD50,C4orf29,FAT4,HSPA4L,INTU,LARP1B,MFSD8,PGRMC2,PLK4,SLC25A31"
TCGA.AA.3844	4	125231738	125323827	20	-0.6104	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	4	125330541	126424440	320	-0.5204	SMALL-LOSS	FOCAL	2	"ANKRD50,FAT4"
TCGA.AG.A014.01A	4	125599804	128595233	31	-0.5364	SMALL-LOSS	FOCAL	3	"ANKRD50,FAT4,INTU"
TCGA.AA.A02K.01A	4	125631126	128651650	40	-0.561	SMALL-LOSS	FOCAL	4	"ANKRD50,FAT4,INTU,SLC25A31"
TCGA.AA.3930.01A	4	126315029	128554173	21	-0.8954	SMALL-LOSS	FOCAL	2	"FAT4,INTU"
TCGA.AA.3844	4	126449116	126457073	6	-0.933	SMALL-LOSS	FOCAL	0	None
TCGA.QG.A5YX	4	126546422	127105359	138	-0.8337	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	4	126810749	127178867	94	-0.723	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	126924447	126977772	17	-0.7304	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	128629699	128722889	16	-0.6007	SMALL-LOSS	FOCAL	3	"HSPA4L,INTU,SLC25A31"
TCGA.CK.5914.01A	4	128802937	128819567	13	-0.7269	SMALL-LOSS	FOCAL	1	PLK4
TCGA.A6.3808.01A	4	128804368	129121649	49	-0.9945	SMALL-LOSS	FOCAL	4	"C4orf29,LARP1B,MFSD8,PLK4"
TCGA.AZ.4684.01A	4	128814891	128886161	15	-0.6332	SMALL-LOSS	FOCAL	2	"MFSD8,PLK4"
TCGA.AZ.4684.01A	4	128904069	129012492	17	-1.1797	SMALL-LOSS	FOCAL	2	"C4orf29,LARP1B"
TCGA.AG.A01W.01A	4	128960997	128971241	5	-0.5953	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	128996041	129019294	6	-1.307	SMALL-LOSS	FOCAL	1	LARP1B
TCGA.AG.4009.01A	4	128996041	129019294	6	-1.1303	SMALL-LOSS	FOCAL	1	LARP1B
TCGA.AG.A01W.01A	4	129061204	129215492	21	-0.6726	SMALL-LOSS	FOCAL	2	"LARP1B,PGRMC2"
TCGA.AA.A01S	4	129497163	131005767	432	-1.05105	SMALL-LOSS	FOCAL	3	"C4orf33,JADE1,SCLT1"
TCGA.AA.3930.01A	4	129782827	129805562	5	-1.1147	SMALL-LOSS	FOCAL	2	"JADE1,SCLT1"
TCGA.AA.A00A.01A	4	129805562	129960125	17	-1.0908	SMALL-LOSS	FOCAL	1	SCLT1
TCGA.AA.3930.01A	4	129809795	130032832	24	-0.6378	SMALL-LOSS	FOCAL	2	"C4orf33,SCLT1"
TCGA.AA.3867	4	129855552	129873146	4	-0.6299	SMALL-LOSS	FOCAL	1	SCLT1
TCGA.AZ.4308	4	129936035	130233601	80	-0.6946	SMALL-LOSS	FOCAL	2	"C4orf33,SCLT1"
TCGA.CK.5914.01A	4	130003395	135121410	13	-0.5682	SMALL-LOSS	FOCAL	4	"C4orf33,PABPC4L,PCDH10,SCLT1"
TCGA.AA.3850	4	130074763	130714767	233	-0.76885	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	130074763	130740403	238	-0.6404	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	4	130541633	138260953	1801	-0.7084	SMALL-LOSS	FOCAL	2	"PABPC4L,PCDH10"
TCGA.AA.3941	4	130766890	138233577	1720	-0.7912	SMALL-LOSS	FOCAL	2	"PABPC4L,PCDH10"
TCGA.AA.3850	4	130817059	133768576	676	-0.75145	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	4	132351654	133278912	152	-0.94135	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6932	4	133515323	133526812	5	-1.1087	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6932	4	133527045	133569369	18	-0.5546	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	4	133758340	140006679	1609	-0.98445	SMALL-LOSS	FOCAL	6	"CCRN4L,ELF2,PABPC4L,PCDH10,PCDH18,SLC7A11"
TCGA.AA.3850	4	133784330	138887854	1208	-0.86035	SMALL-LOSS	FOCAL	3	"PABPC4L,PCDH10,PCDH18"
TCGA.AG.3909.01A	4	134071269	134084091	4	-1.2998	SMALL-LOSS	FOCAL	1	PCDH10
TCGA.AG.3611.01A	4	134071269	134111206	5	-0.9831	SMALL-LOSS	FOCAL	1	PCDH10
TCGA.AA.3930.01A	4	134071269	138442133	8	-1.2449	SMALL-LOSS	FOCAL	3	"PABPC4L,PCDH10,PCDH18"
TCGA.F4.6808	4	134298898	134998338	165	-0.6122	SMALL-LOSS	FOCAL	0	None
TCGA.QG.A5YX	4	134566457	136380330	368	-0.8939	SMALL-LOSS	FOCAL	1	PABPC4L
TCGA.AU.3779	4	134622321	140490090	1463	-0.7532	SMALL-LOSS	FOCAL	10	"CCRN4L,ELF2,MGARP,NAA15,NDUFC1,PABPC4L,PCDH18,RAB33B,SETD7,SLC7A11"
TCGA.AZ.4308	4	134871301	138216898	773	-0.5903	SMALL-LOSS	FOCAL	1	PABPC4L
TCGA.F4.6808	4	135421137	135658740	48	-0.629	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2686	4	135776831	135780486	4	-0.8267	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6808	4	137235167	138537446	386	-0.6056	SMALL-LOSS	FOCAL	1	PCDH18
TCGA.AA.3495	4	137963516	140303267	679	-0.5246	SMALL-LOSS	FOCAL	7	"CCRN4L,ELF2,MGARP,NAA15,NDUFC1,PCDH18,SLC7A11"
TCGA.AA.A01Z	4	138183662	138190883	7	-0.9982	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	138990666	140308983	377	-0.6156	SMALL-LOSS	FOCAL	6	"CCRN4L,ELF2,MGARP,NAA15,NDUFC1,SLC7A11"
TCGA.AA.A00N.01A	4	139982982	140216145	13	-0.6693	SMALL-LOSS	FOCAL	3	"ELF2,MGARP,NDUFC1"
TCGA.CK.5914.01A	4	139994560	140297502	27	-0.6257	SMALL-LOSS	FOCAL	4	"ELF2,MGARP,NAA15,NDUFC1"
TCGA.AA.3679	4	140599052	140600436	4	-0.575	SMALL-LOSS	FOCAL	1	MGST2
TCGA.CK.4951	4	141229825	142046827	289	-0.578	SMALL-LOSS	FOCAL	7	"CLGN,ELMOD2,MGAT4D,RNF150,SCOC,TBC1D9,UCP1"
TCGA.AA.3850	4	141298608	141487954	46	-0.57725	SMALL-LOSS	FOCAL	5	"CLGN,ELMOD2,MGAT4D,SCOC,UCP1"
TCGA.AA.A00N.01A	4	141300214	141310320	4	-1.2385	SMALL-LOSS	FOCAL	2	"CLGN,SCOC"
TCGA.AG.3909.01A	4	141300214	141560446	36	-0.9006	SMALL-LOSS	FOCAL	6	"CLGN,ELMOD2,MGAT4D,SCOC,TBC1D9,UCP1"
TCGA.CK.5914.01A	4	141321484	141448534	8	-0.9333	SMALL-LOSS	FOCAL	3	"CLGN,ELMOD2,MGAT4D"
TCGA.AA.A00N.01A	4	141446590	141583020	24	-1.193	SMALL-LOSS	FOCAL	3	"ELMOD2,TBC1D9,UCP1"
TCGA.CK.5914.01A	4	141545222	141583020	10	-1.0384	SMALL-LOSS	FOCAL	1	TBC1D9
TCGA.AA.3952	4	141748674	144531990	810	-0.5703	SMALL-LOSS	FOCAL	8	"FREM3,GAB1,IL15,INPP4B,RNF150,SMARCA5,USP38,ZNF330"
TCGA.AG.3909.01A	4	142053489	142154830	9	-1.0206	SMALL-LOSS	FOCAL	2	"RNF150,ZNF330"
TCGA.CM.6675	4	142602348	143077400	183	-1.0533	SMALL-LOSS	FOCAL	2	"IL15,INPP4B"
TCGA.D5.6535	4	142986760	143733965	234	-0.6754	SMALL-LOSS	FOCAL	1	INPP4B
TCGA.CM.6675	4	143085645	143472695	125	-0.9917	SMALL-LOSS	FOCAL	1	INPP4B
TCGA.CM.6675	4	143503070	145196205	352	-0.9765	SMALL-LOSS	FOCAL	8	"FREM3,GAB1,GYPA,GYPB,GYPE,INPP4B,SMARCA5,USP38"
TCGA.AG.3909.01A	4	144106602	144116868	3	-1.2522	SMALL-LOSS	FOCAL	1	USP38
TCGA.AA.A00N.01A	4	144106602	144133419	8	-0.9052	SMALL-LOSS	FOCAL	1	USP38
TCGA.AG.3909.01A	4	144438444	144447432	5	-1.2116	SMALL-LOSS	FOCAL	1	SMARCA5
TCGA.AA.A00N.01A	4	144438444	144826564	25	-1.0768	SMALL-LOSS	FOCAL	3	"FREM3,GYPE,SMARCA5"
TCGA.AG.3909.01A	4	144448973	144464968	9	-0.5991	SMALL-LOSS	FOCAL	1	SMARCA5
TCGA.AA.A010.01A	4	144448973	145580752	36	-0.5416	SMALL-LOSS	FOCAL	6	"FREM3,GYPA,GYPB,GYPE,HHIP,SMARCA5"
TCGA.AG.3909.01A	4	144465842	144474218	8	-0.9863	SMALL-LOSS	FOCAL	1	SMARCA5
TCGA.AA.3814	4	144994902	146639207	315	-0.5535	SMALL-LOSS	FOCAL	8	"ABCE1,ANAPC10,C4orf51,GYPA,HHIP,MMAA,OTUD4,SMAD1"
TCGA.AA.A00N.01A	4	145567778	145580752	4	-0.8413	SMALL-LOSS	FOCAL	1	HHIP
TCGA.AA.A010.01A	4	146071638	146463686	13	-1.0695	SMALL-LOSS	FOCAL	2	"OTUD4,SMAD1"
TCGA.AA.A00N.01A	4	146083773	146095735	5	-1.2752	SMALL-LOSS	FOCAL	1	OTUD4
TCGA.AA.A02H.01A	4	146560240	146653554	12	-1.0913	SMALL-LOSS	FOCAL	2	"C4orf51,MMAA"
TCGA.CK.5914.01A	4	146567100	146686089	11	-0.9878	SMALL-LOSS	FOCAL	3	"C4orf51,MMAA,ZNF827"
TCGA.G4.6626	4	149098935	149100932	3	-0.8407	SMALL-LOSS	FOCAL	1	NR3C2
TCGA.AZ.4308	4	149404429	150175020	208	-0.5632	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6780	4	149463101	149703141	69	-0.672	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	149734967	150116299	97	-0.52945	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3727	4	149762447	149763015	4	-1.0377	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	150129860	150621655	74	-0.81975	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	4	150196360	150924976	142	-0.6901	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	150628373	150797993	37	-0.96375	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	150961682	150986248	5	-1.12045	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	4	151505140	151518154	4	-0.8217	SMALL-LOSS	FOCAL	2	"LRBA,MAB21L2"
TCGA.AZ.4684.01A	4	151837501	152200900	26	-0.5567	SMALL-LOSS	FOCAL	4	"LRBA,PRSS48,RPS3A,SH3D19"
TCGA.AG.A01W.01A	4	152240187	152706816	26	-0.6097	SMALL-LOSS	FOCAL	2	"FAM160A1,GATB"
TCGA.AZ.4684.01A	4	152570613	153243991	18	-0.5539	SMALL-LOSS	FOCAL	3	"FAM160A1,FBXW7,GATB"
TCGA.AG.3611.01A	4	152626292	152640550	5	-0.8672	SMALL-LOSS	FOCAL	1	GATB
TCGA.AZ.4308	4	152675446	153450826	232	-0.7112	SMALL-LOSS	FOCAL	2	"FBXW7,GATB"
TCGA.F4.6704	4	152789785	152797765	7	-0.9513	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28C	4	152989599	152992740	3	-0.9923	SMALL-LOSS	FOCAL	0	None
TCGA.AU.3779	4	153130733	153268942	21	-0.9935	SMALL-LOSS	FOCAL	1	FBXW7
TCGA.AA.3982	4	153248142	153265506	3	-1.1298	SMALL-LOSS	FOCAL	1	FBXW7
TCGA.AZ.4308	4	153647077	153707845	8	-0.8414	SMALL-LOSS	FOCAL	2	"ARFIP1,TIGD4"
TCGA.AG.4009.01A	4	153690587	153874594	13	-0.8025	SMALL-LOSS	FOCAL	3	"ARFIP1,FHDC1,TIGD4"
TCGA.AA.A00N.01A	4	153690587	153893479	19	-1.0183	SMALL-LOSS	FOCAL	3	"ARFIP1,FHDC1,TIGD4"
TCGA.AG.3909.01A	4	153690587	154191449	21	-1.0354	SMALL-LOSS	FOCAL	4	"ARFIP1,FHDC1,TIGD4,TRIM2"
TCGA.AZ.4308	4	153879373	153903765	19	-0.6786	SMALL-LOSS	FOCAL	1	FHDC1
TCGA.AA.A01Z	4	154130853	154244314	42	-0.9136	SMALL-LOSS	FOCAL	1	TRIM2
TCGA.AZ.4308	4	154170134	154474339	81	-0.5179	SMALL-LOSS	FOCAL	3	"KIAA0922,MND1,TRIM2"
TCGA.AG.3909.01A	4	154255927	154276738	3	-1.1933	SMALL-LOSS	FOCAL	2	"MND1,TRIM2"
TCGA.AZ.4308	4	154491377	154510575	5	-0.6115	SMALL-LOSS	FOCAL	1	KIAA0922
TCGA.AA.A00N.01A	4	154624021	154706995	13	-1.2707	SMALL-LOSS	FOCAL	3	"RNF175,SFRP2,TLR2"
TCGA.AG.3909.01A	4	154624021	154709449	13	-1.1986	SMALL-LOSS	FOCAL	3	"RNF175,SFRP2,TLR2"
TCGA.AG.4009.01A	4	154702554	154709449	3	-1.1195	SMALL-LOSS	FOCAL	1	SFRP2
TCGA.AG.A01W.01A	4	154766713	154776918	6	-0.781	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	4	155525398	156137762	18	-0.7145	SMALL-LOSS	FOCAL	4	"FGG,LRAT,NPY2R,RBM46"
TCGA.AG.3909.01A	4	155533469	155670085	3	-1.1789	SMALL-LOSS	FOCAL	2	"FGG,LRAT"
TCGA.AZ.4308	4	156740470	157424031	243	-0.6097	SMALL-LOSS	FOCAL	3	"ASIC5,CTSO,TDO2"
TCGA.AA.3930.01A	4	156773294	159136296	59	-0.8279	SMALL-LOSS	FOCAL	8	"ASIC5,CTSO,FAM198B,GLRB,GRIA2,PDGFC,TDO2,TMEM144"
TCGA.AZ.4308	4	157832166	158903390	266	-0.5321	SMALL-LOSS	FOCAL	3	"GLRB,GRIA2,PDGFC"
TCGA.AA.3952	4	157981414	159779240	412	-0.5718	SMALL-LOSS	FOCAL	9	"C4orf46,ETFDH,FAM198B,FNIP2,GLRB,GRIA2,PPID,RXFP1,TMEM144"
TCGA.A6.2671	4	158414038	158552398	60	-0.6906	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2671	4	158570769	158780140	49	-0.6749	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3930.01A	4	159138422	159520441	13	-0.5188	SMALL-LOSS	FOCAL	2	"RXFP1,TMEM144"
TCGA.AZ.4684.01A	4	159161404	159747018	47	-0.5629	SMALL-LOSS	FOCAL	6	"C4orf46,ETFDH,FNIP2,PPID,RXFP1,TMEM144"
TCGA.AA.3560	4	159255798	159754359	94	-0.675	SMALL-LOSS	FOCAL	5	"C4orf46,ETFDH,FNIP2,PPID,RXFP1"
TCGA.AA.3867	4	159377692	159399962	5	-0.552	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	159562128	160319174	164	-0.5872	SMALL-LOSS	FOCAL	7	"C4orf45,C4orf46,ETFDH,FNIP2,PPID,RAPGEF2,RXFP1"
TCGA.AG.3909.01A	4	159812566	159836274	5	-0.9	SMALL-LOSS	FOCAL	2	"C4orf45,FNIP2"
TCGA.D5.6538	4	160057965	161468069	423	-0.5854	SMALL-LOSS	FOCAL	1	RAPGEF2
TCGA.AA.3941	4	160473564	163358336	855	-0.5905	SMALL-LOSS	FOCAL	1	FSTL5
TCGA.AA.3850	4	160486936	163348075	852	-0.66195	SMALL-LOSS	FOCAL	1	FSTL5
TCGA.AA.3867	4	161983251	161997300	6	-1.1904	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3975	4	162109686	163322400	345	-0.8099	SMALL-LOSS	FOCAL	1	FSTL5
TCGA.DY.A1DC	4	162260216	162261297	3	-0.9768	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	4	163382190	165650748	695	-0.66675	SMALL-LOSS	FOCAL	7	"ANP32C,MARCH1,NAF1,NPY1R,NPY5R,TKTL2,TMA16"
TCGA.AZ.4308	4	163523864	163596781	17	-0.6312	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	163714148	163855032	38	-0.7103	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	164058275	164392956	12	-1.228	SMALL-LOSS	FOCAL	4	"NAF1,NPY1R,NPY5R,TKTL2"
TCGA.CK.5914.01A	4	164061353	164392956	11	-1.0318	SMALL-LOSS	FOCAL	4	"NAF1,NPY1R,NPY5R,TKTL2"
TCGA.AZ.4308	4	164202348	164962966	244	-0.6018	SMALL-LOSS	FOCAL	5	"MARCH1,NPY1R,NPY5R,TKTL2,TMA16"
TCGA.AA.A00F.01A	4	164449860	165878206	6	-0.6128	SMALL-LOSS	FOCAL	5	"ANP32C,APELA,FAM218A,MARCH1,TRIM61"
TCGA.AG.A01W.01A	4	165337642	166241211	9	-0.7875	SMALL-LOSS	FOCAL	6	"APELA,FAM218A,KLHL2,TMEM192,TRIM60,TRIM61"
TCGA.D5.6927	4	165576769	165586677	7	-1.0298	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6322	4	165683916	167428984	530	-0.7768	SMALL-LOSS	FOCAL	9	"APELA,CPE,FAM218A,KLHL2,MSMO1,TLL1,TMEM192,TRIM60,TRIM61"
TCGA.AA.A00N.01A	4	166021760	166307355	26	-0.745	SMALL-LOSS	FOCAL	4	"CPE,KLHL2,MSMO1,TMEM192"
TCGA.AG.3909.01A	4	166238941	166307355	8	-0.9126	SMALL-LOSS	FOCAL	3	"CPE,KLHL2,MSMO1"
TCGA.AA.3941	4	166445456	169047304	677	-0.5734	SMALL-LOSS	FOCAL	3	"ANXA10,SPOCK3,TLL1"
TCGA.AA.3850	4	166449914	169047304	675	-0.65785	SMALL-LOSS	FOCAL	3	"ANXA10,SPOCK3,TLL1"
TCGA.AA.A010.01A	4	166976241	167675671	13	-0.6116	SMALL-LOSS	FOCAL	2	"SPOCK3,TLL1"
TCGA.D5.6538	4	167194967	167841648	151	-0.5538	SMALL-LOSS	FOCAL	1	SPOCK3
TCGA.AZ.4308	4	167421169	167500614	18	-0.8166	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	167865979	168569658	165	-0.5549	SMALL-LOSS	FOCAL	1	SPOCK3
TCGA.AA.A02H.01A	4	169049178	169282231	48	-0.7418	SMALL-LOSS	FOCAL	3	"ANXA10,DDX60,DDX60L"
TCGA.CK.5914.01A	4	169085316	169108480	7	-0.5338	SMALL-LOSS	FOCAL	1	ANXA10
TCGA.AZ.4308	4	169121200	170336961	462	-0.5716	SMALL-LOSS	FOCAL	6	"CBR4,DDX60,DDX60L,NEK1,PALLD,SH3RF1"
TCGA.AG.3909.01A	4	169348201	169393559	12	-0.9192	SMALL-LOSS	FOCAL	1	DDX60L
TCGA.AA.A00N.01A	4	169354121	169393559	9	-0.8619	SMALL-LOSS	FOCAL	1	DDX60L
TCGA.AA.A010.01A	4	169812031	169846056	9	-0.687	SMALL-LOSS	FOCAL	1	PALLD
TCGA.AA.3850	4	170382581	170463180	10	-1.02785	SMALL-LOSS	FOCAL	1	NEK1
TCGA.AG.3909.01A	4	170476833	170613216	19	-0.9164	SMALL-LOSS	FOCAL	2	"CLCN3,NEK1"
TCGA.AA.A00N.01A	4	170476833	170618323	21	-0.7735	SMALL-LOSS	FOCAL	2	"CLCN3,NEK1"
TCGA.AG.4009.01A	4	170601170	170610157	3	-0.8716	SMALL-LOSS	FOCAL	1	CLCN3
TCGA.AA.A010.01A	4	170608758	170625107	7	-0.9413	SMALL-LOSS	FOCAL	1	CLCN3
TCGA.AA.A00N.01A	4	170658764	172735705	22	-0.9954	SMALL-LOSS	FOCAL	4	"AADAT,C4orf27,GALNTL6,MFAP3L"
TCGA.AZ.4308	4	170819109	171590933	245	-0.6631	SMALL-LOSS	FOCAL	2	"AADAT,MFAP3L"
TCGA.AG.4009.01A	4	170982993	172735705	13	-0.9674	SMALL-LOSS	FOCAL	2	"AADAT,GALNTL6"
TCGA.AG.3909.01A	4	170990240	172735705	8	-1.0885	SMALL-LOSS	FOCAL	2	"AADAT,GALNTL6"
TCGA.AA.A01S	4	171376189	173832581	651	-0.97815	SMALL-LOSS	FOCAL	1	GALNTL6
TCGA.A6.6653	4	171660038	172034856	99	-0.8725	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	172552216	173463470	237	-0.6704	SMALL-LOSS	FOCAL	1	GALNTL6
TCGA.CA.5254	4	172949885	174991467	513	-1.1249	SMALL-LOSS	FOCAL	6	"GALNT7,GALNTL6,HAND2,HMGB2,SAP30,SCRG1"
TCGA.AA.A00F.01A	4	173150760	173961046	11	-0.5254	SMALL-LOSS	FOCAL	1	GALNTL6
TCGA.AA.A00N.01A	4	174235092	175443043	37	-0.6188	SMALL-LOSS	FOCAL	8	"CEP44,FBXO8,GALNT7,HAND2,HMGB2,HPGD,SAP30,SCRG1"
TCGA.AG.3909.01A	4	174235092	175636590	43	-0.6475	SMALL-LOSS	FOCAL	9	"CEP44,FBXO8,GALNT7,GLRA3,HAND2,HMGB2,HPGD,SAP30,SCRG1"
TCGA.CK.5914.01A	4	174239541	174449889	12	-0.7734	SMALL-LOSS	FOCAL	5	"GALNT7,HAND2,HMGB2,SAP30,SCRG1"
TCGA.AG.4009.01A	4	174239541	175238419	29	-0.6513	SMALL-LOSS	FOCAL	7	"CEP44,FBXO8,GALNT7,HAND2,HMGB2,SAP30,SCRG1"
TCGA.AA.3522	4	174247634	174409309	34	-0.9345	SMALL-LOSS	FOCAL	3	"HMGB2,SAP30,SCRG1"
TCGA.AF.3914.01A	4	174294499	174449889	7	-1.1294	SMALL-LOSS	FOCAL	3	"HAND2,SAP30,SCRG1"
TCGA.AZ.4308	4	175117182	175456765	67	-0.622	SMALL-LOSS	FOCAL	3	"CEP44,FBXO8,HPGD"
TCGA.CK.5914.01A	4	175183886	175443043	18	-0.6724	SMALL-LOSS	FOCAL	3	"CEP44,FBXO8,HPGD"
TCGA.AZ.4308	4	175683800	175801922	47	-0.6061	SMALL-LOSS	FOCAL	1	GLRA3
TCGA.CA.5254	4	176156360	178943988	889	-1.1256	SMALL-LOSS	FOCAL	8	"AGA,ASB5,GPM6A,NEIL3,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.G4.6299	4	176228129	176364537	24	-1.0539	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5667	4	176459681	176934858	134	-1.1808	SMALL-LOSS	FOCAL	1	GPM6A
TCGA.AA.A01S	4	176566471	182262916	2097	-1.00075	SMALL-LOSS	FOCAL	8	"AGA,ASB5,GPM6A,NEIL3,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.DM.A1HA	4	176855438	182091294	1909	-0.949	SMALL-LOSS	FOCAL	8	"AGA,ASB5,GPM6A,NEIL3,SPATA4,SPCS3,VEGFC,WDR17"
TCGA.CK.5914.01A	4	177081108	177114564	16	-0.8837	SMALL-LOSS	FOCAL	2	"SPATA4,WDR17"
TCGA.AG.3909.01A	4	177241181	177608925	7	-0.7064	SMALL-LOSS	FOCAL	2	"SPCS3,VEGFC"
TCGA.CK.5914.01A	4	177243256	177608925	7	-1.1355	SMALL-LOSS	FOCAL	2	"SPCS3,VEGFC"
TCGA.AZ.4308	4	177365251	177728199	152	-0.6215	SMALL-LOSS	FOCAL	1	VEGFC
TCGA.G4.6322	4	177870508	177928040	18	-0.5956	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	177975543	178255909	111	-0.6516	SMALL-LOSS	FOCAL	1	NEIL3
TCGA.AG.3909.01A	4	178352825	178361389	8	-1.2242	SMALL-LOSS	FOCAL	1	AGA
TCGA.CK.5914.01A	4	178352825	178361389	8	-1.0006	SMALL-LOSS	FOCAL	1	AGA
TCGA.AZ.4308	4	178869369	178987225	36	-0.7725	SMALL-LOSS	FOCAL	0	None
TCGA.4T.AA8H	4	178909909	179366371	130	-0.766	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	179163371	179386404	84	-0.6208	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	179675394	180140625	149	-0.6441	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6538	4	179903242	181635577	711	-0.5973	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5341	4	180732437	184560259	1613	-1.1313	SMALL-LOSS	FOCAL	7	"CDKN2AIP,CLDN22,CLDN24,DCTD,ING2,TENM3,WWC2"
TCGA.AZ.4308	4	181038349	182234442	528	-0.6531	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5538	4	181504038	181692084	79	-0.6288	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3529	4	181519491	181573913	28	-0.5242	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A71X	4	181711661	183455209	844	-0.7629	SMALL-LOSS	FOCAL	1	TENM3
TCGA.CI.6622	4	181939525	182171040	86	-0.6578	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	4	182594342	182614558	12	-0.5758	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	4	182751266	183854482	505	-1.00985	SMALL-LOSS	FOCAL	2	"DCTD,TENM3"
TCGA.AA.3844	4	182761062	182782544	10	-0.5483	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	4	183676091	183836566	12	-1.2808	SMALL-LOSS	FOCAL	2	"DCTD,TENM3"
TCGA.3L.AA1B	4	183689628	183759049	22	-0.612	SMALL-LOSS	FOCAL	1	TENM3
TCGA.AG.3909.01A	4	183694578	183836566	11	-1.0952	SMALL-LOSS	FOCAL	2	"DCTD,TENM3"
TCGA.AA.A00N.01A	4	183694578	184020604	12	-1.0911	SMALL-LOSS	FOCAL	3	"DCTD,TENM3,WWC2"
TCGA.AG.4009.01A	4	183710259	183717752	3	-0.9126	SMALL-LOSS	FOCAL	1	TENM3
TCGA.AA.A00L.01A	4	183814131	184930853	59	-0.9457	SMALL-LOSS	FOCAL	9	"CDKN2AIP,CLDN22,CLDN24,DCTD,ING2,RWDD4,STOX2,TRAPPC11,WWC2"
TCGA.AA.A017.01A	4	184233475	184607719	25	-0.5992	SMALL-LOSS	FOCAL	7	"CDKN2AIP,CLDN22,CLDN24,ING2,RWDD4,TRAPPC11,WWC2"
TCGA.AG.3909.01A	4	184366651	184595849	13	-1.0704	SMALL-LOSS	FOCAL	4	"CDKN2AIP,ING2,RWDD4,TRAPPC11"
TCGA.CK.5914.01A	4	184366651	184601276	19	-0.9208	SMALL-LOSS	FOCAL	4	"CDKN2AIP,ING2,RWDD4,TRAPPC11"
TCGA.DM.A28A	4	184415302	185893523	563	-0.7785	SMALL-LOSS	FOCAL	10	"ACSL1,CASP3,CENPU,ENPP6,ING2,IRF2,PRIMPOL,RWDD4,STOX2,TRAPPC11"
TCGA.AA.A010.01A	4	184612419	184633679	11	-0.8053	SMALL-LOSS	FOCAL	1	TRAPPC11
TCGA.AA.A00N.01A	4	184626088	184922429	6	-0.705	SMALL-LOSS	FOCAL	2	"STOX2,TRAPPC11"
TCGA.DY.A1DF	4	185305365	186120908	303	-0.5644	SMALL-LOSS	FOCAL	8	"ACSL1,CASP3,CENPU,CFAP97,HELT,IRF2,PRIMPOL,SLC25A4"
TCGA.AG.4009.01A	4	185550376	185599344	12	-0.6041	SMALL-LOSS	FOCAL	2	"CASP3,PRIMPOL"
TCGA.AA.A00L.01A	4	185550376	186067940	54	-1.0491	SMALL-LOSS	FOCAL	6	"ACSL1,CASP3,CENPU,HELT,PRIMPOL,SLC25A4"
TCGA.AG.4009.01A	4	185940511	186085136	7	-1.0391	SMALL-LOSS	FOCAL	3	"CFAP97,HELT,SLC25A4"
TCGA.AA.A00N.01A	4	186318033	186392052	30	-1.2633	SMALL-LOSS	FOCAL	4	"ANKRD37,C4orf47,CCDC110,UFSP2"
TCGA.AG.3909.01A	4	186320040	186392052	21	-1.3157	SMALL-LOSS	FOCAL	4	"ANKRD37,C4orf47,CCDC110,UFSP2"
TCGA.CK.5914.01A	4	186320040	186392052	28	-1.1355	SMALL-LOSS	FOCAL	4	"ANKRD37,C4orf47,CCDC110,UFSP2"
TCGA.AA.A010.01A	4	186370702	186384074	7	-0.5967	SMALL-LOSS	FOCAL	2	"C4orf47,CCDC110"
TCGA.AG.4009.01A	4	186379819	186446137	13	-0.5594	SMALL-LOSS	FOCAL	2	"CCDC110,PDLIM3"
TCGA.AG.3909.01A	4	186423399	187126307	49	-0.6427	SMALL-LOSS	FOCAL	5	"CYP4V2,FAM149A,PDLIM3,SORBS2,TLR3"
TCGA.AA.A010.01A	4	186435367	186446137	4	-0.9797	SMALL-LOSS	FOCAL	1	PDLIM3
TCGA.AA.3941	4	186470420	186472466	4	-0.7228	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	4	186603575	186621069	8	-0.7997	SMALL-LOSS	FOCAL	1	SORBS2
TCGA.AG.4009.01A	4	186997753	187126307	21	-0.8412	SMALL-LOSS	FOCAL	3	"CYP4V2,FAM149A,TLR3"
TCGA.AA.A00N.01A	4	186997753	187131571	24	-1.0681	SMALL-LOSS	FOCAL	3	"CYP4V2,FAM149A,TLR3"
TCGA.CK.5914.01A	4	187003487	187126307	20	-1.0391	SMALL-LOSS	FOCAL	3	"CYP4V2,FAM149A,TLR3"
TCGA.AA.A010.01A	4	187083977	187093008	5	-1.2438	SMALL-LOSS	FOCAL	1	FAM149A
TCGA.AG.3906.01A	4	187159363	187175701	5	-0.6414	SMALL-LOSS	FOCAL	1	KLKB1
TCGA.AA.A00N.01A	4	187201576	187208821	6	-0.6258	SMALL-LOSS	FOCAL	1	F11
TCGA.AA.3967.01A	4	187516791	187584433	23	-1.163	SMALL-LOSS	FOCAL	1	FAT1
TCGA.AG.3906.01A	4	187525534	187534316	6	-0.734	SMALL-LOSS	FOCAL	1	FAT1
TCGA.CK.5914.01A	4	187584433	189026256	15	-0.9153	SMALL-LOSS	FOCAL	3	"FAT1,TRIML2,ZFP42"
TCGA.AG.4009.01A	4	187627736	188924315	5	-0.6984	SMALL-LOSS	FOCAL	2	"FAT1,ZFP42"
TCGA.AA.A00N.01A	4	187627736	189026256	14	-1.0417	SMALL-LOSS	FOCAL	3	"FAT1,TRIML2,ZFP42"
TCGA.AG.3909.01A	4	187628539	189026256	11	-1.0154	SMALL-LOSS	FOCAL	3	"FAT1,TRIML2,ZFP42"
TCGA.AA.3666	4	187708855	190921708	971	-0.564	SMALL-LOSS	FOCAL	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.DY.A1DC	4	187753093	187815000	27	-0.624	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	4	187802424	187802668	3	-1.156	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6598	4	187848171	188056825	84	-1.0521	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	4	187926757	187936581	8	-0.6372	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01Y	4	188110284	190921708	802	-0.8163	SMALL-LOSS	FOCAL	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.AA.A00L.01A	4	188923931	190884165	19	-0.8704	SMALL-LOSS	FOCAL	4	"FRG1,TRIML1,TRIML2,ZFP42"
TCGA.CA.6715	4	189007283	190921708	555	-0.9485	SMALL-LOSS	FOCAL	3	"FRG1,TRIML1,TRIML2"
TCGA.AG.A015.01A	4	189060662	189067925	5	-1.1106	SMALL-LOSS	FOCAL	1	TRIML1
TCGA.AA.A01S	4	189116386	190921708	529	-0.97185	SMALL-LOSS	FOCAL	1	FRG1
TCGA.AA.3492	4	189317436	189949044	224	-0.7998	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6649	4	189362291	189592659	88	-0.7828	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	4	189730780	189731615	3	-0.9897	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	4	189730780	190921708	327	-0.7087	SMALL-LOSS	FOCAL	1	FRG1
TCGA.5M.AAT4	4	189748306	190408035	231	-1.103	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3902	4	189769089	189770153	3	-0.7609	SMALL-LOSS	FOCAL	0	None
TCGA.AF.6136	4	190357460	190921708	97	-0.6638	SMALL-LOSS	FOCAL	1	FRG1
TCGA.AA.3975	4	190545358	190563986	4	-1.1567	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DG	4	190545358	190579294	6	-0.6696	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	4	190545358	190579294	6	-0.9158	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	4	190862099	190947494	13	-1.242	SMALL-LOSS	FOCAL	2	"FRG1,FRG2"
TCGA.AA.3815.01A	4	190864293	190947494	9	-0.6967	SMALL-LOSS	FOCAL	2	"FRG1,FRG2"
TCGA.AA.A00N.01A	4	190864293	190947494	15	-1.1949	SMALL-LOSS	FOCAL	2	"FRG1,FRG2"
TCGA.CK.4952.01A	4	191141203	191185128	8	-1.1562	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5659	5	51454	560439	92	-0.5971	SMALL-LOSS	FOCAL	8	"AHRR,CCDC127,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3"
TCGA.CK.5914.01A	5	140393	224425	22	-0.7339	SMALL-LOSS	FOCAL	4	"CCDC127,LRRC14B,PLEKHG4B,SDHA"
TCGA.AA.A010.01A	5	304213	446273	16	-0.7769	SMALL-LOSS	FOCAL	3	"AHRR,EXOC3,PDCD6"
TCGA.AG.A011.01A	5	479934	485207	3	-0.7417	SMALL-LOSS	FOCAL	1	SLC9A3
TCGA.AA.A01Q.01A	5	801159	917074	33	-0.9233	SMALL-LOSS	FOCAL	3	"BRD9,TRIP13,ZDHHC11"
TCGA.AG.4008	5	806224	852565	3	-0.7932	SMALL-LOSS	FOCAL	1	ZDHHC11
TCGA.AG.3906.01A	5	908451	1210509	17	-0.6382	SMALL-LOSS	FOCAL	4	"NKD2,SLC12A7,SLC6A19,TRIP13"
TCGA.AA.3930.01A	5	911911	1201737	25	-0.6737	SMALL-LOSS	FOCAL	4	"NKD2,SLC12A7,SLC6A19,TRIP13"
TCGA.AG.3891.01A	5	1032200	1214027	22	-0.5957	SMALL-LOSS	FOCAL	3	"NKD2,SLC12A7,SLC6A19"
TCGA.AA.A01Q.01A	5	1094237	1394763	50	-0.5904	SMALL-LOSS	FOCAL	6	"CLPTM1L,SLC12A7,SLC6A18,SLC6A19,SLC6A3,TERT"
TCGA.AG.3891.01A	5	1266548	1330346	16	-0.6032	SMALL-LOSS	FOCAL	2	"CLPTM1L,TERT"
TCGA.AA.3815.01A	5	1294069	1338935	13	-0.6331	SMALL-LOSS	FOCAL	2	"CLPTM1L,TERT"
TCGA.AG.3906.01A	5	1318427	1334365	9	-0.811	SMALL-LOSS	FOCAL	1	CLPTM1L
TCGA.AA.3930.01A	5	1321706	1341754	11	-1.076	SMALL-LOSS	FOCAL	1	CLPTM1L
TCGA.G4.6323	5	1359937	1780935	155	-0.6452	SMALL-LOSS	FOCAL	2	"LPCAT1,SLC6A3"
TCGA.AA.A010.01A	5	1394763	1882639	37	-0.5804	SMALL-LOSS	FOCAL	5	"IRX4,LPCAT1,MRPL36,NDUFS6,SLC6A3"
TCGA.AG.3891.01A	5	1400965	1421969	8	-0.8173	SMALL-LOSS	FOCAL	1	SLC6A3
TCGA.AG.3611.01A	5	1443010	1474020	5	-0.976	SMALL-LOSS	FOCAL	2	"LPCAT1,SLC6A3"
TCGA.AA.A01Q.01A	5	1479665	1878076	12	-1.059	SMALL-LOSS	FOCAL	4	"IRX4,LPCAT1,MRPL36,NDUFS6"
TCGA.AG.4009.01A	5	1879589	5146226	13	-1.1139	SMALL-LOSS	FOCAL	5	"ADAMTS16,C5orf38,IRX1,IRX2,IRX4"
TCGA.AG.A00Y.01A	5	1879589	5239223	23	-0.6368	SMALL-LOSS	FOCAL	5	"ADAMTS16,C5orf38,IRX1,IRX2,IRX4"
TCGA.AA.A00L.01A	5	2747617	3601039	10	-0.9026	SMALL-LOSS	FOCAL	3	"C5orf38,IRX1,IRX2"
TCGA.AA.3941	5	3373654	3374507	3	-1.1472	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	3463134	3470913	4	-1.031	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	3552596	3559972	7	-1.2147	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	5	3555932	3559972	6	-0.5674	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	5	3702042	3704141	9	-1.0285	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	5	4443853	4467951	10	-0.7522	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	5436459	7414635	62	-0.6761	SMALL-LOSS	FOCAL	7	"ADCY2,ICE1,MED10,NSUN2,PAPD7,SRD5A1,UBE2QL1"
TCGA.AG.3909.01A	5	5486787	6754814	43	-0.6406	SMALL-LOSS	FOCAL	6	"ICE1,MED10,NSUN2,PAPD7,SRD5A1,UBE2QL1"
TCGA.AG.3591	5	5799986	5800595	3	-1.1439	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	5	6372564	7414635	42	-0.7224	SMALL-LOSS	FOCAL	6	"ADCY2,MED10,NSUN2,PAPD7,SRD5A1,UBE2QL1"
TCGA.AG.A008.01A	5	6604670	6605338	2	-1.0791	SMALL-LOSS	FOCAL	1	NSUN2
TCGA.AA.A00L.01A	5	6609891	9050449	77	-0.5472	SMALL-LOSS	FOCAL	8	"ADCY2,C5orf49,FASTKD3,MTRR,NSUN2,PAPD7,SEMA5A,SRD5A1"
TCGA.AA.A010.01A	5	6737605	7414635	14	-0.8712	SMALL-LOSS	FOCAL	2	"ADCY2,PAPD7"
TCGA.AG.4009.01A	5	6737605	7414635	13	-0.6556	SMALL-LOSS	FOCAL	2	"ADCY2,PAPD7"
TCGA.AG.3611.01A	5	6739795	6754814	10	-0.9971	SMALL-LOSS	FOCAL	1	PAPD7
TCGA.AA.A00D.01A	5	6750396	7816947	27	-0.7437	SMALL-LOSS	FOCAL	2	"ADCY2,PAPD7"
TCGA.AG.3742	5	7177337	7189924	10	-0.808	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	5	7831945	7878042	14	-0.6937	SMALL-LOSS	FOCAL	3	"C5orf49,FASTKD3,MTRR"
TCGA.CK.5914.01A	5	7859497	7885787	14	-1.2305	SMALL-LOSS	FOCAL	2	"FASTKD3,MTRR"
TCGA.AA.A00D.01A	5	7886681	9629264	29	-0.748	SMALL-LOSS	FOCAL	3	"MTRR,SEMA5A,TAS2R1"
TCGA.AA.A00F.01A	5	7892800	9379893	25	-0.5551	SMALL-LOSS	FOCAL	2	"MTRR,SEMA5A"
TCGA.AA.A00L.01A	5	9051964	9237871	15	-1.2522	SMALL-LOSS	FOCAL	1	SEMA5A
TCGA.AZ.6599	5	9214027	9214414	5	-0.727	SMALL-LOSS	FOCAL	1	SEMA5A
TCGA.A6.6653	5	9214210	9214414	4	-0.7447	SMALL-LOSS	FOCAL	1	SEMA5A
TCGA.A6.6653	5	9331847	9362870	28	-0.6869	SMALL-LOSS	FOCAL	1	SEMA5A
TCGA.AA.A00N.01A	5	10235249	10402150	31	-0.8467	SMALL-LOSS	FOCAL	4	"CCT5,CMBL,FAM173B,MARCH6"
TCGA.AA.A00D.01A	5	10378810	13793577	84	-0.6906	SMALL-LOSS	FOCAL	6	"ANKRD33B,CTNND2,DAP,DNAH5,MARCH6,ROPN1L"
TCGA.AA.A00L.01A	5	10378810	14316575	139	-0.647	SMALL-LOSS	FOCAL	7	"ANKRD33B,CTNND2,DAP,DNAH5,MARCH6,ROPN1L,TRIO"
TCGA.AA.A00N.01A	5	10423790	10464913	9	-0.7394	SMALL-LOSS	FOCAL	2	"MARCH6,ROPN1L"
TCGA.CK.5914.01A	5	10448321	10464913	4	-0.8055	SMALL-LOSS	FOCAL	1	ROPN1L
TCGA.CM.4746	5	10531997	12605957	828	-0.8304	SMALL-LOSS	FOCAL	3	"ANKRD33B,CTNND2,DAP"
TCGA.A6.6653	5	10537350	10563044	10	-0.7877	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00F.01A	5	10973545	11364777	15	-0.5417	SMALL-LOSS	FOCAL	1	CTNND2
TCGA.AG.4009.01A	5	11236751	11732201	8	-0.5377	SMALL-LOSS	FOCAL	1	CTNND2
TCGA.AA.3850	5	11725573	13393042	409	-0.82125	SMALL-LOSS	FOCAL	1	CTNND2
TCGA.AA.3941	5	11733441	13471155	427	-0.7954	SMALL-LOSS	FOCAL	1	CTNND2
TCGA.AA.3844	5	13181230	13191337	7	-1.0841	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	13510646	13517842	5	-0.8929	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	5	13595111	13610043	13	-0.6846	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	13595111	13621299	18	-0.9111	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	5	13794018	13824291	10	-1.0656	SMALL-LOSS	FOCAL	1	DNAH5
TCGA.AG.3909.01A	5	13794018	13824291	9	-0.5615	SMALL-LOSS	FOCAL	1	DNAH5
TCGA.AA.A00D.01A	5	13830678	14358239	46	-0.6591	SMALL-LOSS	FOCAL	2	"DNAH5,TRIO"
TCGA.AG.3909.01A	5	14359424	14388659	11	-0.6119	SMALL-LOSS	FOCAL	1	TRIO
TCGA.AG.A01W.01A	5	14440496	14454026	9	-0.744	SMALL-LOSS	FOCAL	1	TRIO
TCGA.AG.3909.01A	5	14462814	14485172	12	-0.8471	SMALL-LOSS	FOCAL	1	TRIO
TCGA.CK.5914.01A	5	14462814	14678766	29	-0.9543	SMALL-LOSS	FOCAL	3	"FAM105A,OTULIN,TRIO"
TCGA.AG.4009.01A	5	14474074	14485172	8	-1.1633	SMALL-LOSS	FOCAL	1	TRIO
TCGA.AA.A00N.01A	5	14487526	14678766	17	-0.75	SMALL-LOSS	FOCAL	3	"FAM105A,OTULIN,TRIO"
TCGA.AA.A00D.01A	5	14601070	17275294	30	-0.5287	SMALL-LOSS	FOCAL	9	"ANKH,BASP1,FAM105A,FAM134B,FBXL7,MARCH11,MYO10,OTULIN,ZNF622"
TCGA.AA.3811	5	15126539	16332498	319	-0.5499	SMALL-LOSS	FOCAL	2	"FBXL7,MARCH11"
TCGA.AA.3864	5	15309983	15333852	12	-0.9966	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3667	5	15719221	15720477	6	-0.7732	SMALL-LOSS	FOCAL	1	FBXL7
TCGA.A6.6137	5	15719349	15720477	5	-1.2768	SMALL-LOSS	FOCAL	1	FBXL7
TCGA.AA.A00L.01A	5	17275294	22078524	22	-0.7931	SMALL-LOSS	FOCAL	3	"BASP1,CDH12,CDH18"
TCGA.CM.6163	5	17602801	17640213	4	-1.0527	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	5	17797787	31177627	3434	-0.63775	SMALL-LOSS	FOCAL	5	"CDH10,CDH12,CDH18,CDH9,PRDM9"
TCGA.AA.3811	5	17992927	31574880	3608	-0.593	SMALL-LOSS	FOCAL	8	"C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,PRDM9"
TCGA.AA.3941	5	18057605	31075754	3313	-0.6272	SMALL-LOSS	FOCAL	5	"CDH10,CDH12,CDH18,CDH9,PRDM9"
TCGA.NH.A6GA	5	18523766	18542709	3	-1.081	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4682	5	18746821	20198523	368	-0.7404	SMALL-LOSS	FOCAL	1	CDH18
TCGA.G4.6322	5	18759682	18811942	16	-0.5255	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6323	5	19148995	25497918	1492	-0.52	SMALL-LOSS	FOCAL	4	"CDH10,CDH12,CDH18,PRDM9"
TCGA.AA.A00D.01A	5	19473293	22078524	21	-0.9008	SMALL-LOSS	FOCAL	2	"CDH12,CDH18"
TCGA.AF.3913	5	20835591	20896606	5	-1.2862	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D0	5	21516193	21665640	33	-0.7918	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6922	5	22020118	23566602	352	-0.881	SMALL-LOSS	FOCAL	2	"CDH12,PRDM9"
TCGA.AG.A01W.01A	5	23545299	23562778	10	-0.5641	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	5	24487731	31317761	31	-0.8113	SMALL-LOSS	FOCAL	3	"CDH10,CDH6,CDH9"
TCGA.AA.A00D.01A	5	24487731	31322883	32	-0.8309	SMALL-LOSS	FOCAL	3	"CDH10,CDH6,CDH9"
TCGA.AF.A56K	5	25419906	25423827	3	-0.91	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5662	5	25423827	25472104	21	-0.9783	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5820	5	25656355	25909922	94	-0.9093	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6923	5	26555787	26577463	13	-0.668	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6601	5	27524451	27525513	3	-1.2148	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	5	27525389	27528613	4	-1.24885	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	5	27535472	27716508	31	-0.7198	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AATA	5	29018261	29020616	5	-1.2264	SMALL-LOSS	FOCAL	0	None
TCGA.CM.4752	5	29018261	29020616	5	-1.1282	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6533	5	30682344	30849337	61	-0.8313	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	5	31293088	31316932	11	-0.9898	SMALL-LOSS	FOCAL	1	CDH6
TCGA.AA.3941	5	31460416	31472931	3	-1.0855	SMALL-LOSS	FOCAL	1	DROSHA
TCGA.AA.3982	5	31460416	31472931	3	-1.0791	SMALL-LOSS	FOCAL	1	DROSHA
TCGA.AA.3941	5	31520140	31520708	3	-0.9623	SMALL-LOSS	FOCAL	1	DROSHA
TCGA.AA.3982	5	31520140	31520708	3	-0.755	SMALL-LOSS	FOCAL	1	DROSHA
TCGA.AA.A00D.01A	5	32239065	32406838	27	-0.6867	SMALL-LOSS	FOCAL	2	"MTMR12,ZFR"
TCGA.AA.A010.01A	5	32395218	32444650	11	-0.749	SMALL-LOSS	FOCAL	1	ZFR
TCGA.AA.A00L.01A	5	33467613	33947216	28	-0.8282	SMALL-LOSS	FOCAL	4	"ADAMTS12,RXFP3,SLC45A2,TARS"
TCGA.AA.A00D.01A	5	33549271	33683937	18	-0.9219	SMALL-LOSS	FOCAL	1	ADAMTS12
TCGA.AA.3524	5	33795798	33801387	4	-0.9384	SMALL-LOSS	FOCAL	1	ADAMTS12
TCGA.AG.3909.01A	5	33891808	34005811	13	-1.0164	SMALL-LOSS	FOCAL	4	"ADAMTS12,AMACR,RXFP3,SLC45A2"
TCGA.CK.5914.01A	5	34814655	34845551	9	-0.8851	SMALL-LOSS	FOCAL	2	"RAI14,TTC23L"
TCGA.AG.3909.01A	5	34829773	34845551	4	-0.5544	SMALL-LOSS	FOCAL	2	"RAI14,TTC23L"
TCGA.AA.A00N.01A	5	34908828	34950258	24	-1.2019	SMALL-LOSS	FOCAL	3	"BRIX1,DNAJC21,RAD1"
TCGA.CK.5914.01A	5	34908828	34954631	26	-1.0577	SMALL-LOSS	FOCAL	3	"BRIX1,DNAJC21,RAD1"
TCGA.AG.4009.01A	5	34918452	34950258	16	-0.8246	SMALL-LOSS	FOCAL	2	"BRIX1,DNAJC21"
TCGA.AA.A00D.01A	5	34954631	36136359	73	-0.6572	SMALL-LOSS	FOCAL	9	"AGXT2,CAPSL,DNAJC21,IL7R,LMBRD2,PRLR,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.3982	5	35142188	35169160	14	-0.7408	SMALL-LOSS	FOCAL	1	PRLR
TCGA.AA.3930.01A	5	35692621	35712852	9	-0.6286	SMALL-LOSS	FOCAL	1	SPEF2
TCGA.CK.5914.01A	5	36136359	36152277	7	-0.9159	SMALL-LOSS	FOCAL	2	"LMBRD2,SKP2"
TCGA.AA.3982	5	36180786	36245431	16	-0.7872	SMALL-LOSS	FOCAL	2	"NADK2,SKP2"
TCGA.AA.3941	5	36207049	36347012	43	-0.7085	SMALL-LOSS	FOCAL	2	"NADK2,RANBP3L"
TCGA.AA.3850	5	36212216	36368966	53	-0.60785	SMALL-LOSS	FOCAL	2	"NADK2,RANBP3L"
TCGA.AA.A00L.01A	5	36225588	36257003	6	-1.2602	SMALL-LOSS	FOCAL	2	"NADK2,RANBP3L"
TCGA.AG.A015.01A	5	36253720	36262001	6	-0.5237	SMALL-LOSS	FOCAL	1	RANBP3L
TCGA.AA.A00L.01A	5	36257504	37309184	107	-0.5657	SMALL-LOSS	FOCAL	5	"C5orf42,NIPBL,NUP155,RANBP3L,SLC1A3"
TCGA.AG.3909.01A	5	36676954	36686117	5	-0.6218	SMALL-LOSS	FOCAL	1	SLC1A3
TCGA.CK.5914.01A	5	37000495	37003310	4	-0.5166	SMALL-LOSS	FOCAL	1	NIPBL
TCGA.AG.4009.01A	5	37000495	37024635	16	-1.2346	SMALL-LOSS	FOCAL	1	NIPBL
TCGA.AG.3909.01A	5	37006442	37020513	10	-0.9058	SMALL-LOSS	FOCAL	1	NIPBL
TCGA.CK.5914.01A	5	37006442	37020513	10	-1.1063	SMALL-LOSS	FOCAL	1	NIPBL
TCGA.A6.3808.01A	5	37008678	37064697	25	-1.243	SMALL-LOSS	FOCAL	1	NIPBL
TCGA.AA.A00N.01A	5	37022106	37027400	4	-0.9491	SMALL-LOSS	FOCAL	1	NIPBL
TCGA.CK.5914.01A	5	37153815	37164323	5	-1.0545	SMALL-LOSS	FOCAL	1	C5orf42
TCGA.CK.5914.01A	5	37165590	37230922	28	-0.5799	SMALL-LOSS	FOCAL	1	C5orf42
TCGA.AG.4009.01A	5	37226368	37310625	14	-0.8491	SMALL-LOSS	FOCAL	2	"C5orf42,NUP155"
TCGA.AA.3509.01A	5	37230922	37516582	50	-0.6192	SMALL-LOSS	FOCAL	3	"C5orf42,NUP155,WDR70"
TCGA.CK.5914.01A	5	37238927	37243093	3	-0.9329	SMALL-LOSS	FOCAL	1	C5orf42
TCGA.AZ.4684.01A	5	37238927	37516582	49	-0.6713	SMALL-LOSS	FOCAL	3	"C5orf42,NUP155,WDR70"
TCGA.AG.3909.01A	5	37291954	37305119	10	-0.7031	SMALL-LOSS	FOCAL	1	NUP155
TCGA.CK.5914.01A	5	37301489	37309184	7	-0.9118	SMALL-LOSS	FOCAL	1	NUP155
TCGA.AA.A00N.01A	5	37304804	37314293	6	-1.0311	SMALL-LOSS	FOCAL	1	NUP155
TCGA.AG.3909.01A	5	37381679	37516582	7	-0.5633	SMALL-LOSS	FOCAL	1	WDR70
TCGA.AG.4009.01A	5	37443349	37605129	4	-0.5929	SMALL-LOSS	FOCAL	1	WDR70
TCGA.CK.5914.01A	5	37479888	37516582	2	-1.1344	SMALL-LOSS	FOCAL	1	WDR70
TCGA.CK.5914.01A	5	38448344	38490245	11	-0.5501	SMALL-LOSS	FOCAL	2	"EGFLAM,LIFR"
TCGA.AG.4009.01A	5	38528776	38883916	6	-0.7443	SMALL-LOSS	FOCAL	2	"LIFR,OSMR"
TCGA.AA.3860	5	38596721	38601878	5	-0.9377	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	5	39331731	39342141	4	-0.925	SMALL-LOSS	FOCAL	1	C9
TCGA.AG.4009.01A	5	39331731	39342141	4	-0.7604	SMALL-LOSS	FOCAL	1	C9
TCGA.AG.3909.01A	5	40681064	40767521	9	-0.8034	SMALL-LOSS	FOCAL	3	"PRKAA1,PTGER4,TTC33"
TCGA.AG.4009.01A	5	40716200	40730348	3	-1.1383	SMALL-LOSS	FOCAL	1	TTC33
TCGA.CK.5914.01A	5	40716200	40775482	11	-0.6752	SMALL-LOSS	FOCAL	2	"PRKAA1,TTC33"
TCGA.AA.A00N.01A	5	40767521	40777500	6	-0.909	SMALL-LOSS	FOCAL	1	PRKAA1
TCGA.G4.6322	5	40976116	41294801	124	-0.8876	SMALL-LOSS	FOCAL	3	"C6,C7,MROH2B"
TCGA.AA.A00D.01A	5	41142878	41794714	26	-1.0094	SMALL-LOSS	FOCAL	3	"C6,OXCT1,PLCXD3"
TCGA.AA.A00N.01A	5	41853481	41941242	16	-0.8461	SMALL-LOSS	FOCAL	3	"C5orf51,FBXO4,OXCT1"
TCGA.AA.A017.01A	5	41907790	41929752	7	-0.8211	SMALL-LOSS	FOCAL	2	"C5orf51,FBXO4"
TCGA.AG.3909.01A	5	41907790	41941242	10	-1.169	SMALL-LOSS	FOCAL	2	"C5orf51,FBXO4"
TCGA.CK.5914.01A	5	41907790	42629086	13	-0.8937	SMALL-LOSS	FOCAL	3	"C5orf51,FBXO4,GHR"
TCGA.AA.3850	5	42281034	42710503	94	-0.52185	SMALL-LOSS	FOCAL	1	GHR
TCGA.CK.5914.01A	5	42796914	43161299	13	-0.5298	SMALL-LOSS	FOCAL	4	"ANXA2R,CCDC152,SEPP1,ZNF131"
TCGA.AG.3909.01A	5	43039519	43123289	3	-1.0328	SMALL-LOSS	FOCAL	2	"ANXA2R,ZNF131"
TCGA.CK.5914.01A	5	43486966	43615913	25	-1.1529	SMALL-LOSS	FOCAL	3	"C5orf34,NNT,PAIP1"
TCGA.AA.3850	5	43631002	46061984	276	-0.90005	SMALL-LOSS	FOCAL	4	"FGF10,HCN1,MRPS30,NNT"
TCGA.AA.3854	5	44944015	44962498	4	-0.7242	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	5	46096886	53376612	1053	-0.631	SMALL-LOSS	FOCAL	10	"ARL15,EMB,FST,ISL1,ITGA1,ITGA2,MOCS2,NDUFS4,PARP8,PELO"
TCGA.AA.3850	5	46099779	53063109	936	-0.57345	SMALL-LOSS	FOCAL	9	"EMB,FST,ISL1,ITGA1,ITGA2,MOCS2,NDUFS4,PARP8,PELO"
TCGA.CK.5914.01A	5	49723923	50084292	10	-0.7091	SMALL-LOSS	FOCAL	2	"EMB,PARP8"
TCGA.AG.3909.01A	5	49723923	50092775	13	-0.6027	SMALL-LOSS	FOCAL	2	"EMB,PARP8"
TCGA.AG.3909.01A	5	50679423	50689280	6	-1.1923	SMALL-LOSS	FOCAL	1	ISL1
TCGA.AG.4009.01A	5	50679423	50689280	6	-0.9951	SMALL-LOSS	FOCAL	1	ISL1
TCGA.AA.A00N.01A	5	50679423	52097224	9	-1.0953	SMALL-LOSS	FOCAL	3	"ISL1,ITGA1,PELO"
TCGA.AA.A017.01A	5	50679423	52097224	8	-0.7179	SMALL-LOSS	FOCAL	3	"ISL1,ITGA1,PELO"
TCGA.CK.5914.01A	5	50679423	52097224	9	-0.8646	SMALL-LOSS	FOCAL	3	"ISL1,ITGA1,PELO"
TCGA.AY.A71X	5	50983503	53916241	1008	-0.9091	SMALL-LOSS	FOCAL	9	"ARL15,FST,HSPB3,ITGA1,ITGA2,MOCS2,NDUFS4,PELO,SNX18"
TCGA.AA.A010.01A	5	52344436	52379168	21	-0.7502	SMALL-LOSS	FOCAL	1	ITGA2
TCGA.AG.3909.01A	5	52394387	52781763	13	-0.6463	SMALL-LOSS	FOCAL	2	"FST,MOCS2"
TCGA.AG.A02X.01A	5	52396194	52781763	11	-1.0453	SMALL-LOSS	FOCAL	2	"FST,MOCS2"
TCGA.AA.3982	5	52553429	52560643	5	-1.2391	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1DB	5	52557593	54280006	662	-0.7065	SMALL-LOSS	FOCAL	6	"ARL15,ESM1,FST,HSPB3,NDUFS4,SNX18"
TCGA.AG.4009.01A	5	52778663	52781763	6	-1.1047	SMALL-LOSS	FOCAL	1	FST
TCGA.D5.6927	5	53223719	53228674	3	-0.8661	SMALL-LOSS	FOCAL	1	ARL15
TCGA.AG.4009.01A	5	54455974	54468369	5	-1.0484	SMALL-LOSS	FOCAL	2	"CDC20B,GPX8"
TCGA.AG.3909.01A	5	54455974	54528150	8	-0.6588	SMALL-LOSS	FOCAL	4	"CCNO,CDC20B,GPX8,MCIDAS"
TCGA.AA.A00N.01A	5	54455974	54555628	11	-0.9565	SMALL-LOSS	FOCAL	5	"CCNO,CDC20B,DHX29,GPX8,MCIDAS"
TCGA.F5.6465	5	55210439	55514480	76	-0.5209	SMALL-LOSS	FOCAL	3	"ANKRD55,IL31RA,IL6ST"
TCGA.AA.A010.01A	5	55851882	56189327	19	-0.5833	SMALL-LOSS	FOCAL	2	"C5orf67,MAP3K1"
TCGA.F5.6465	5	56190530	56698241	120	-0.5336	SMALL-LOSS	FOCAL	4	"GPBP1,MAP3K1,MIER3,SETD9"
TCGA.AA.A00L.01A	5	56205436	56509898	17	-0.7726	SMALL-LOSS	FOCAL	3	"GPBP1,MIER3,SETD9"
TCGA.AG.3909.01A	5	56207008	56246369	15	-0.6181	SMALL-LOSS	FOCAL	2	"MIER3,SETD9"
TCGA.CK.5914.01A	5	56207008	56532872	22	-0.5734	SMALL-LOSS	FOCAL	3	"GPBP1,MIER3,SETD9"
TCGA.AG.4009.01A	5	56229023	56246369	6	-0.8411	SMALL-LOSS	FOCAL	1	MIER3
TCGA.DM.A1DB	5	56749487	56989546	98	-0.6879	SMALL-LOSS	FOCAL	1	ACTBL2
TCGA.AA.A00L.01A	5	56777355	57755489	11	-0.9255	SMALL-LOSS	FOCAL	2	"ACTBL2,PLK2"
TCGA.DM.A1DB	5	57244656	58885578	667	-0.7386	SMALL-LOSS	FOCAL	4	"GAPT,PDE4D,PLK2,RAB3C"
TCGA.AG.3598	5	57313234	57405799	49	-1.0781	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	5	57750359	57754535	8	-0.5739	SMALL-LOSS	FOCAL	1	PLK2
TCGA.AG.3909.01A	5	57750359	57755489	9	-0.8978	SMALL-LOSS	FOCAL	1	PLK2
TCGA.AG.A011.01A	5	57754535	57755489	2	-0.963	SMALL-LOSS	FOCAL	1	PLK2
TCGA.AA.A01Z	5	58330268	58485030	74	-0.8785	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.DM.A28H	5	58351327	58575322	103	-0.6037	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.AA.3516	5	58355457	58823365	195	-0.5978	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.DM.A1D0	5	58396110	58701417	149	-0.6516	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.A6.6137	5	58424439	58649974	107	-0.8025	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.A6.2683	5	58501621	58900330	156	-0.7118	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.A6.6652	5	58559041	59223239	228	-0.7216	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.DY.A1H8	5	58661596	58851810	74	-0.8726	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.CA.5797	5	59096732	59536806	102	-1.0757	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.AA.3492	5	59106856	59187396	33	-0.7159	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.DC.6682	5	59111914	59164992	23	-0.7525	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.AA.3848	5	59155166	59180234	16	-0.6262	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.AH.6643	5	59174102	59520444	67	-0.8491	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.AA.3848	5	59187396	59320431	33	-1.0154	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.AH.6549.01A	5	59188957	59943188	10	-1.0312	SMALL-LOSS	FOCAL	2	"DEPDC1B,PDE4D"
TCGA.DC.6682	5	59223239	59270554	12	-0.6934	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.AA.3488	5	59231306	59771342	120	-1.1581	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.A6.5666	5	59282314	59353198	16	-1.2638	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.A6.2678	5	59308515	59355380	13	-0.6514	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.AA.3848	5	59321830	59568715	40	-0.5501	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.EI.6508	5	59350787	59414825	8	-0.6563	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.DM.A28H	5	59414135	59464225	9	-0.529	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.EI.6508	5	59504283	59752639	68	-0.7433	SMALL-LOSS	FOCAL	1	PDE4D
TCGA.CK.5914.01A	5	60170389	60199408	7	-0.5631	SMALL-LOSS	FOCAL	1	ERCC8
TCGA.AA.3561	5	60581370	61124894	207	-1.0056	SMALL-LOSS	FOCAL	2	"C5orf64,ZSWIM6"
TCGA.CK.5914.01A	5	61686651	61699038	8	-1.0788	SMALL-LOSS	FOCAL	1	DIMT1
TCGA.AA.A017.01A	5	61694285	61762921	9	-0.9079	SMALL-LOSS	FOCAL	2	"DIMT1,IPO11"
TCGA.AA.A010.01A	5	61783556	61897572	18	-0.5309	SMALL-LOSS	FOCAL	2	"IPO11,LRRC70"
TCGA.AG.4009.01A	5	61789788	61826474	6	-0.7349	SMALL-LOSS	FOCAL	1	IPO11
TCGA.AA.3850	5	62166773	63570348	350	-0.64635	SMALL-LOSS	FOCAL	2	"HTR1A,RNF180"
TCGA.A6.6653	5	62344505	62411348	19	-0.5273	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	62581140	63738571	248	-0.9373	SMALL-LOSS	FOCAL	2	"HTR1A,RNF180"
TCGA.F5.6465	5	63314424	63644922	42	-0.5387	SMALL-LOSS	FOCAL	1	RNF180
TCGA.CL.5918	5	63798586	64219027	139	-0.7614	SMALL-LOSS	FOCAL	4	"CWC27,FAM159B,RGS7BP,SREK1IP1"
TCGA.AG.3882	5	63874625	63874862	3	-1.2277	SMALL-LOSS	FOCAL	1	RGS7BP
TCGA.AZ.4684.01A	5	64817229	65288540	65	-0.8499	SMALL-LOSS	FOCAL	7	"CENPK,ERBB2IP,NLN,PPWD1,SGTB,TRAPPC13,TRIM23"
TCGA.CK.5914.01A	5	64863293	64880785	8	-0.7658	SMALL-LOSS	FOCAL	1	PPWD1
TCGA.CK.5914.01A	5	64976276	65016488	6	-0.8966	SMALL-LOSS	FOCAL	1	SGTB
TCGA.AZ.4684.01A	5	66032547	68390028	64	-0.6788	SMALL-LOSS	FOCAL	4	"CD180,MAST4,PIK3R1,SLC30A5"
TCGA.AA.A00N.01A	5	66438202	68408911	38	-1.1214	SMALL-LOSS	FOCAL	4	"CD180,MAST4,PIK3R1,SLC30A5"
TCGA.AG.3611.01A	5	66478644	67593199	19	-0.7329	SMALL-LOSS	FOCAL	2	"CD180,PIK3R1"
TCGA.AG.A01W.01A	5	66514441	67612455	10	-0.5898	SMALL-LOSS	FOCAL	1	PIK3R1
TCGA.EI.7002	5	66826685	68528842	592	-1.2098	SMALL-LOSS	FOCAL	5	"CCNB1,CENPH,MRPS36,PIK3R1,SLC30A5"
TCGA.AZ.4682	5	67515893	68263689	269	-0.6884	SMALL-LOSS	FOCAL	1	PIK3R1
TCGA.AG.3909.01A	5	67576705	67593199	10	-1.3009	SMALL-LOSS	FOCAL	1	PIK3R1
TCGA.A6.3808.01A	5	68463706	68665212	48	-0.949	SMALL-LOSS	FOCAL	8	"AK6,CCDC125,CCNB1,CDK7,CENPH,MRPS36,RAD17,TAF9"
TCGA.AG.3909.01A	5	68473049	68505514	9	-0.9181	SMALL-LOSS	FOCAL	2	"CCNB1,CENPH"
TCGA.AG.3909.01A	5	68616015	68809738	30	-0.615	SMALL-LOSS	FOCAL	6	"AK6,CCDC125,MARVELD2,OCLN,RAD17,TAF9"
TCGA.AA.A00N.01A	5	68616015	68830483	31	-0.9954	SMALL-LOSS	FOCAL	6	"AK6,CCDC125,MARVELD2,OCLN,RAD17,TAF9"
TCGA.AA.A010.01A	5	68799995	68843709	6	-0.7896	SMALL-LOSS	FOCAL	1	OCLN
TCGA.DM.A28M.01A	5	68843709	70375587	40	-0.8385	SMALL-LOSS	FOCAL	9	"GTF2H2,GTF2H2C,GTF2H2C_2,NAIP,OCLN,SERF1A,SERF1B,SMN1,SMN2"
TCGA.CM.6165.01A	5	68849360	69328080	10	-0.5218	SMALL-LOSS	FOCAL	5	"GTF2H2C,GTF2H2C_2,OCLN,SERF1A,SERF1B"
TCGA.AG.A015.01A	5	68861897	70404460	34	-0.9016	SMALL-LOSS	FOCAL	8	"GTF2H2,GTF2H2C,GTF2H2C_2,NAIP,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AA.3967.01A	5	68868225	70378552	17	-0.6488	SMALL-LOSS	FOCAL	8	"GTF2H2,GTF2H2C,GTF2H2C_2,NAIP,SERF1A,SERF1B,SMN1,SMN2"
TCGA.AG.4009.01A	5	70337961	70388857	9	-0.7514	SMALL-LOSS	FOCAL	1	GTF2H2
TCGA.AA.A010.01A	5	70793055	70840816	21	-0.9033	SMALL-LOSS	FOCAL	1	BDP1
TCGA.AG.4009.01A	5	70805274	70813121	7	-0.7861	SMALL-LOSS	FOCAL	1	BDP1
TCGA.AA.A00N.01A	5	70806091	70811869	5	-1.1929	SMALL-LOSS	FOCAL	1	BDP1
TCGA.AF.3914.01A	5	70811869	70860549	19	-0.8448	SMALL-LOSS	FOCAL	1	BDP1
TCGA.AG.3909.01A	5	70813121	70835354	7	-0.9753	SMALL-LOSS	FOCAL	1	BDP1
TCGA.AG.4009.01A	5	70818087	70860549	17	-1.29	SMALL-LOSS	FOCAL	1	BDP1
TCGA.EI.7002	5	70827974	72069683	408	-1.2757	SMALL-LOSS	FOCAL	7	"BDP1,CARTPT,MAP1B,MCCC2,MRPS27,PTCD2,ZNF366"
TCGA.AG.3909.01A	5	70852691	70898285	8	-0.9551	SMALL-LOSS	FOCAL	2	"BDP1,MCCC2"
TCGA.AA.A00N.01A	5	70855781	70900142	9	-0.9481	SMALL-LOSS	FOCAL	2	"BDP1,MCCC2"
TCGA.CK.5914.01A	5	70858080	70936770	12	-0.7114	SMALL-LOSS	FOCAL	2	"BDP1,MCCC2"
TCGA.AA.3861.01A	5	70892063	72178238	59	-0.5645	SMALL-LOSS	FOCAL	7	"CARTPT,MAP1B,MCCC2,MRPS27,PTCD2,TNPO1,ZNF366"
TCGA.A6.3808.01A	5	70895439	70922430	4	-0.5574	SMALL-LOSS	FOCAL	1	MCCC2
TCGA.AA.A010.01A	5	71516688	71533794	7	-0.6417	SMALL-LOSS	FOCAL	1	MRPS27
TCGA.CK.5914.01A	5	71591288	71634400	10	-0.9862	SMALL-LOSS	FOCAL	2	"MRPS27,PTCD2"
TCGA.AG.4009.01A	5	72144165	72157584	4	-0.9752	SMALL-LOSS	FOCAL	1	TNPO1
TCGA.AA.A010.01A	5	72168430	72178238	4	-0.809	SMALL-LOSS	FOCAL	1	TNPO1
TCGA.AA.A010.01A	5	72359626	72743485	17	-0.8997	SMALL-LOSS	FOCAL	4	"FCHO2,FOXD1,TMEM171,TMEM174"
TCGA.AG.4009.01A	5	72419182	72427354	3	-0.7474	SMALL-LOSS	FOCAL	1	TMEM171
TCGA.CK.5914.01A	5	72742790	72868273	21	-0.6018	SMALL-LOSS	FOCAL	4	"ANKRA2,BTF3,FOXD1,UTP15"
TCGA.AG.3909.01A	5	72794904	72800939	5	-1.1093	SMALL-LOSS	FOCAL	1	BTF3
TCGA.AA.A00N.01A	5	73178280	74000992	21	-0.6022	SMALL-LOSS	FOCAL	3	"ARHGEF28,ENC1,HEXB"
TCGA.CK.5914.01A	5	73179545	74000992	20	-0.5501	SMALL-LOSS	FOCAL	3	"ARHGEF28,ENC1,HEXB"
TCGA.AG.3909.01A	5	73193760	73992794	13	-0.6482	SMALL-LOSS	FOCAL	3	"ARHGEF28,ENC1,HEXB"
TCGA.AA.A00N.01A	5	74324469	74645819	8	-1.0008	SMALL-LOSS	FOCAL	3	"ANKRD31,GCNT4,HMGCR"
TCGA.CK.5914.01A	5	74324469	74646602	9	-0.6951	SMALL-LOSS	FOCAL	3	"ANKRD31,GCNT4,HMGCR"
TCGA.AG.3909.01A	5	74638401	74646602	7	-0.6961	SMALL-LOSS	FOCAL	1	HMGCR
TCGA.CK.5914.01A	5	74988172	75008629	7	-0.6633	SMALL-LOSS	FOCAL	1	POC5
TCGA.AA.3982	5	75235329	75294409	37	-0.835	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	5	75427528	75490727	2	-1.0792	SMALL-LOSS	FOCAL	1	SV2C
TCGA.AG.3909.01A	5	75580948	75594590	6	-0.6188	SMALL-LOSS	FOCAL	1	SV2C
TCGA.AA.A00N.01A	5	75580948	75621137	9	-1.054	SMALL-LOSS	FOCAL	1	SV2C
TCGA.AA.3982	5	75924973	75927634	7	-0.9877	SMALL-LOSS	FOCAL	1	IQGAP2
TCGA.AG.3909.01A	5	76249803	76358895	19	-0.9422	SMALL-LOSS	FOCAL	2	"AGGF1,CRHBP"
TCGA.AA.A00N.01A	5	76251467	76326555	5	-1.2103	SMALL-LOSS	FOCAL	2	"AGGF1,CRHBP"
TCGA.CK.5914.01A	5	76251467	76351284	15	-1.0939	SMALL-LOSS	FOCAL	2	"AGGF1,CRHBP"
TCGA.AG.4009.01A	5	76251467	76358895	18	-1.0542	SMALL-LOSS	FOCAL	2	"AGGF1,CRHBP"
TCGA.AA.A010.01A	5	76259131	76326555	3	-1.2164	SMALL-LOSS	FOCAL	2	"AGGF1,CRHBP"
TCGA.AA.A01C.01A	5	76330196	76344698	7	-1.0369	SMALL-LOSS	FOCAL	1	AGGF1
TCGA.AA.A00D.01A	5	76624766	78359407	88	-0.6467	SMALL-LOSS	FOCAL	9	"AP3B1,ARSB,DMGDH,LHFPL2,OTP,PDE8B,SCAMP1,TBCA,WDR41"
TCGA.AA.3982	5	76864103	76871344	4	-0.9399	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	5	78349960	78379419	9	-0.8184	SMALL-LOSS	FOCAL	2	"BHMT2,DMGDH"
TCGA.AA.A00N.01A	5	78349960	78426724	19	-1.0885	SMALL-LOSS	FOCAL	3	"BHMT,BHMT2,DMGDH"
TCGA.AG.3909.01A	5	78411543	78426724	7	-1.1234	SMALL-LOSS	FOCAL	1	BHMT
TCGA.A6.6653	5	78463394	78484059	3	-1.1721	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	5	78808497	78919023	4	-0.5357	SMALL-LOSS	FOCAL	2	"HOMER1,PAPD4"
TCGA.AG.3909.01A	5	78975361	78980959	3	-0.6389	SMALL-LOSS	FOCAL	1	PAPD4
TCGA.AG.4009.01A	5	78975361	78980959	3	-0.7414	SMALL-LOSS	FOCAL	1	PAPD4
TCGA.AA.A00N.01A	5	79279460	79335882	10	-1.3012	SMALL-LOSS	FOCAL	2	"MTX3,THBS4"
TCGA.AG.3909.01A	5	79279460	79335882	9	-0.9863	SMALL-LOSS	FOCAL	2	"MTX3,THBS4"
TCGA.AA.A00N.01A	5	79854253	79974699	17	-0.897	SMALL-LOSS	FOCAL	4	"ANKRD34B,DHFR,MSH3,MTRNR2L2"
TCGA.AA.3982	5	80047075	80066134	4	-0.9238	SMALL-LOSS	FOCAL	1	MSH3
TCGA.AG.4009.01A	5	80667502	80756857	10	-0.871	SMALL-LOSS	FOCAL	2	"ACOT12,SSBP2"
TCGA.AA.A00N.01A	5	80681524	80742618	7	-1.2893	SMALL-LOSS	FOCAL	2	"ACOT12,SSBP2"
TCGA.AG.3909.01A	5	80681524	80744550	8	-0.9924	SMALL-LOSS	FOCAL	2	"ACOT12,SSBP2"
TCGA.AA.3941	5	80872770	80904141	9	-1.0886	SMALL-LOSS	FOCAL	1	SSBP2
TCGA.AA.3982	5	80872770	80904308	10	-0.8449	SMALL-LOSS	FOCAL	1	SSBP2
TCGA.AA.3941	5	81868525	81896197	11	-1.2257	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	82344473	82360351	7	-1.2027	SMALL-LOSS	FOCAL	1	TMEM167A
TCGA.AA.3850	5	82445690	89200956	1452	-0.74285	SMALL-LOSS	FOCAL	9	"CCNH,COX7C,EDIL3,HAPLN1,MEF2C,RASA1,TMEM161B,VCAN,XRCC4"
TCGA.AA.A00K.01A	5	82836768	86628287	27	-0.8768	SMALL-LOSS	FOCAL	5	"COX7C,EDIL3,HAPLN1,RASA1,VCAN"
TCGA.F4.6461	5	83512128	83632690	33	-0.6011	SMALL-LOSS	FOCAL	1	EDIL3
TCGA.A6.3807	5	84621228	89654818	1012	-0.6164	SMALL-LOSS	FOCAL	5	"CCNH,COX7C,MEF2C,RASA1,TMEM161B"
TCGA.AG.3726	5	86399261	86669013	50	-0.6272	SMALL-LOSS	FOCAL	1	RASA1
TCGA.AA.A00K.01A	5	86629058	89769604	54	-0.515	SMALL-LOSS	FOCAL	6	"CCNH,CETN3,MBLAC2,MEF2C,RASA1,TMEM161B"
TCGA.CK.5914.01A	5	86695160	87521548	16	-0.54	SMALL-LOSS	FOCAL	2	"CCNH,TMEM161B"
TCGA.AG.4009.01A	5	86708448	87962625	14	-0.5905	SMALL-LOSS	FOCAL	2	"CCNH,TMEM161B"
TCGA.AA.A00N.01A	5	87493448	87521548	8	-0.7043	SMALL-LOSS	FOCAL	1	TMEM161B
TCGA.AG.3909.01A	5	87493448	87962625	12	-0.577	SMALL-LOSS	FOCAL	1	TMEM161B
TCGA.AG.3726	5	89743880	90833610	313	-0.6678	SMALL-LOSS	FOCAL	5	"ADGRV1,ARRDC3,LYSMD3,MBLAC2,POLR3G"
TCGA.AG.4009.01A	5	89910635	89924352	7	-0.6031	SMALL-LOSS	FOCAL	1	ADGRV1
TCGA.EI.6508	5	90082395	90386513	83	-0.73	SMALL-LOSS	FOCAL	1	ADGRV1
TCGA.CK.5914.01A	5	90106018	90151521	9	-0.6014	SMALL-LOSS	FOCAL	1	ADGRV1
TCGA.AA.A00N.01A	5	90124749	90159524	7	-1.2879	SMALL-LOSS	FOCAL	1	ADGRV1
TCGA.AG.3909.01A	5	90136428	90159524	6	-0.8454	SMALL-LOSS	FOCAL	1	ADGRV1
TCGA.AA.3844	5	90314652	90318136	5	-0.931	SMALL-LOSS	FOCAL	1	ADGRV1
TCGA.AA.3977	5	90314652	90318136	5	-0.9271	SMALL-LOSS	FOCAL	1	ADGRV1
TCGA.AF.3914.01A	5	90667169	92956666	12	-1.07	SMALL-LOSS	FOCAL	3	"ARRDC3,FAM172A,NR2F1"
TCGA.CK.5914.01A	5	90667169	92956666	12	-0.8572	SMALL-LOSS	FOCAL	3	"ARRDC3,FAM172A,NR2F1"
TCGA.AG.3909.01A	5	90669451	92929251	10	-0.9211	SMALL-LOSS	FOCAL	2	"ARRDC3,NR2F1"
TCGA.AA.A00N.01A	5	92920723	92956666	4	-0.7599	SMALL-LOSS	FOCAL	2	"FAM172A,NR2F1"
TCGA.DM.A0XD	5	93276882	93496810	16	-0.6937	SMALL-LOSS	FOCAL	2	"FAM172A,KIAA0825"
TCGA.DM.A1HB	5	93533657	93675077	28	-0.7975	SMALL-LOSS	FOCAL	1	KIAA0825
TCGA.DC.6682	5	93533657	93896127	71	-0.9348	SMALL-LOSS	FOCAL	1	KIAA0825
TCGA.AA.A00N.01A	5	93964479	93966171	3	-0.9365	SMALL-LOSS	FOCAL	1	ANKRD32
TCGA.AG.3890	5	94495369	94783619	81	-1.0938	SMALL-LOSS	FOCAL	2	"FAM81B,MCTP1"
TCGA.AG.4009.01A	5	95067320	95083990	3	-0.936	SMALL-LOSS	FOCAL	1	RHOBTB3
TCGA.AA.A01C.01A	5	96112059	96139099	18	-0.6063	SMALL-LOSS	FOCAL	1	ERAP1
TCGA.AA.A00N.01A	5	96125948	96139099	9	-0.9327	SMALL-LOSS	FOCAL	1	ERAP1
TCGA.AA.3680	5	96126307	96633958	156	-0.6595	SMALL-LOSS	FOCAL	5	"ERAP1,ERAP2,LIX1,LNPEP,RIOK2"
TCGA.AA.A017.01A	5	96244618	96251335	5	-0.8639	SMALL-LOSS	FOCAL	1	ERAP2
TCGA.AA.3941	5	96533468	97045120	111	-0.8808	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3684	5	97048465	97088442	16	-0.6104	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	97116590	99469003	585	-0.6248	SMALL-LOSS	FOCAL	2	"CHD1,RGMB"
TCGA.DC.6683	5	97930166	97935133	5	-1.1039	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3680	5	99012290	107053675	2013	-0.6943	SMALL-LOSS	FOCAL	10	"C5orf30,EFNA5,FAM174A,GIN1,NUDT12,PAM,PPIP5K2,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.AA.3518	5	99532805	100943792	325	-0.7833	SMALL-LOSS	FOCAL	2	"FAM174A,ST8SIA4"
TCGA.AA.3941	5	99568539	106675141	1670	-0.7093	SMALL-LOSS	FOCAL	9	"C5orf30,FAM174A,GIN1,NUDT12,PAM,PPIP5K2,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.AG.3890	5	100719153	101389007	191	-1.0601	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	5	102465282	102488305	9	-0.8535	SMALL-LOSS	FOCAL	1	PPIP5K2
TCGA.AA.A00N.01A	5	102490314	102502831	5	-0.9073	SMALL-LOSS	FOCAL	1	PPIP5K2
TCGA.AM.5820	5	102852239	106962544	1044	-0.7295	SMALL-LOSS	FOCAL	2	"EFNA5,NUDT12"
TCGA.AG.3726	5	106348310	110019148	1199	-0.6963	SMALL-LOSS	FOCAL	6	"EFNA5,FBXL17,FER,MAN2A1,PJA2,TMEM232"
TCGA.AG.4009.01A	5	108672892	108680358	3	-1.3062	SMALL-LOSS	FOCAL	1	PJA2
TCGA.AA.3973	5	109138042	109963189	224	-0.6427	SMALL-LOSS	FOCAL	2	"MAN2A1,TMEM232"
TCGA.AG.4009.01A	5	109152927	109202495	10	-0.6502	SMALL-LOSS	FOCAL	1	MAN2A1
TCGA.AG.3611.01A	5	109152927	110074811	11	-0.7497	SMALL-LOSS	FOCAL	3	"MAN2A1,SLC25A46,TMEM232"
TCGA.5M.AATA	5	109338071	110412584	266	-0.8243	SMALL-LOSS	FOCAL	3	"SLC25A46,TMEM232,TSLP"
TCGA.CK.5914.01A	5	110407137	110411597	5	-1.1892	SMALL-LOSS	FOCAL	1	TSLP
TCGA.5M.AATA	5	110417874	112675950	894	-0.8492	SMALL-LOSS	FOCAL	10	"APC,CAMK4,DCP2,EPB41L4A,MCC,NREP,REEP5,SRP19,STARD4,WDR36"
TCGA.AA.3850	5	110689721	110703628	11	-1.05625	SMALL-LOSS	FOCAL	1	CAMK4
TCGA.AA.3850	5	110772403	110774942	10	-1.16605	SMALL-LOSS	FOCAL	1	CAMK4
TCGA.AA.A01C.01A	5	110814032	111500666	12	-0.6604	SMALL-LOSS	FOCAL	4	"CAMK4,EPB41L4A,NREP,STARD4"
TCGA.AA.3848	5	111516284	112370966	329	-1.0996	SMALL-LOSS	FOCAL	6	"APC,DCP2,EPB41L4A,MCC,REEP5,SRP19"
TCGA.AA.3986	5	112062673	114471453	929	-0.5448	SMALL-LOSS	FOCAL	9	"APC,DCP2,KCNN2,MCC,REEP5,SRP19,TRIM36,TSSK1B,YTHDC2"
TCGA.AG.A01L.01A	5	112090540	112238028	24	-0.6209	SMALL-LOSS	FOCAL	3	"APC,REEP5,SRP19"
TCGA.AA.A00Q.01A	5	112101965	112170601	13	-1.2637	SMALL-LOSS	FOCAL	1	APC
TCGA.AA.A00Q.01A	5	112173233	114598361	97	-0.5933	SMALL-LOSS	FOCAL	10	"APC,DCP2,KCNN2,MCC,PGGT1B,REEP5,SRP19,TRIM36,TSSK1B,YTHDC2"
TCGA.AA.3844	5	112889373	112928778	9	-0.6411	SMALL-LOSS	FOCAL	1	YTHDC2
TCGA.AA.3850	5	113053979	113944967	371	-0.54465	SMALL-LOSS	FOCAL	1	KCNN2
TCGA.AG.3742	5	113328802	113335388	6	-1.1281	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6606	5	113328802	113335388	6	-0.9455	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	5	114462228	114515603	12	-0.7087	SMALL-LOSS	FOCAL	1	TRIM36
TCGA.AA.A00Q.01A	5	114603493	115173273	23	-0.9503	SMALL-LOSS	FOCAL	7	"ATG12,CCDC112,CDO1,FEM1C,TICAM2,TMED7,TMED7-TICAM2"
TCGA.AG.3909.01A	5	114603493	115177070	24	-1.106	SMALL-LOSS	FOCAL	7	"ATG12,CCDC112,CDO1,FEM1C,TICAM2,TMED7,TMED7-TICAM2"
TCGA.CK.5914.01A	5	114603493	115177070	24	-0.7181	SMALL-LOSS	FOCAL	7	"ATG12,CCDC112,CDO1,FEM1C,TICAM2,TMED7,TMED7-TICAM2"
TCGA.AA.A00N.01A	5	114603493	115205687	28	-1.2779	SMALL-LOSS	FOCAL	8	"AP3S1,ATG12,CCDC112,CDO1,FEM1C,TICAM2,TMED7,TMED7-TICAM2"
TCGA.AG.4009.01A	5	114878595	115177070	14	-0.7988	SMALL-LOSS	FOCAL	6	"ATG12,CDO1,FEM1C,TICAM2,TMED7,TMED7-TICAM2"
TCGA.AA.3941	5	115425028	115501791	28	-0.821	SMALL-LOSS	FOCAL	1	COMMD10
TCGA.AA.3844	5	115506747	115508581	4	-1.2272	SMALL-LOSS	FOCAL	1	COMMD10
TCGA.AA.3941	5	115514833	115522004	5	-0.9134	SMALL-LOSS	FOCAL	1	COMMD10
TCGA.AA.3941	5	115600253	115638972	23	-1.1188	SMALL-LOSS	FOCAL	1	COMMD10
TCGA.AG.A02N	5	115732821	115939895	111	-0.7669	SMALL-LOSS	FOCAL	1	SEMA6A
TCGA.AA.3844	5	116261465	116262503	3	-1.1667	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	5	116312565	116826713	188	-0.78345	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	116352476	117564266	422	-0.9891	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	5	116390487	116393509	5	-0.7552	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	5	116832087	117564266	240	-1.11335	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	5	117528780	117532375	9	-1.0783	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	118239755	118276727	5	-0.8094	SMALL-LOSS	FOCAL	1	DTWD2
TCGA.AA.A00N.01A	5	118280223	118464896	13	-1.2149	SMALL-LOSS	FOCAL	2	"DMXL1,DTWD2"
TCGA.AG.4009.01A	5	118310227	118464896	10	-0.8409	SMALL-LOSS	FOCAL	2	"DMXL1,DTWD2"
TCGA.CK.5914.01A	5	118433657	118464896	9	-0.9523	SMALL-LOSS	FOCAL	1	DMXL1
TCGA.AA.A010.01A	5	118440818	118479529	11	-1.0339	SMALL-LOSS	FOCAL	1	DMXL1
TCGA.AA.A010.01A	5	118480183	118487582	5	-0.535	SMALL-LOSS	FOCAL	1	DMXL1
TCGA.AA.3860	5	118658797	118660288	3	-1.2922	SMALL-LOSS	FOCAL	1	TNFAIP8
TCGA.A6.6140	5	118887155	120051768	387	-0.6734	SMALL-LOSS	FOCAL	2	"FAM170A,PRR16"
TCGA.AA.3941	5	119266608	121768670	798	-0.8874	SMALL-LOSS	FOCAL	7	"FTMT,LOC100505841,LOX,PRR16,SNCAIP,SRFBP1,ZNF474"
TCGA.AA.3850	5	119276113	121768670	798	-0.83445	SMALL-LOSS	FOCAL	7	"FTMT,LOC100505841,LOX,PRR16,SNCAIP,SRFBP1,ZNF474"
TCGA.AG.3611.01A	5	120021652	121412551	8	-0.7651	SMALL-LOSS	FOCAL	4	"FTMT,LOX,PRR16,SRFBP1"
TCGA.A6.6140	5	121046982	121802391	229	-0.7958	SMALL-LOSS	FOCAL	6	"FTMT,LOC100505841,LOX,SNCAIP,SRFBP1,ZNF474"
TCGA.CK.5914.01A	5	121402352	121411059	5	-0.939	SMALL-LOSS	FOCAL	1	LOX
TCGA.AA.A010.01A	5	122130924	122226674	14	-0.8771	SMALL-LOSS	FOCAL	2	"SNX2,SNX24"
TCGA.AA.A00N.01A	5	122359533	122435327	7	-0.7188	SMALL-LOSS	FOCAL	2	"PPIC,PRDM6"
TCGA.AA.3844	5	122696881	122705736	11	-0.6845	SMALL-LOSS	FOCAL	1	CEP120
TCGA.CK.5914.01A	5	122728962	122754014	5	-0.893	SMALL-LOSS	FOCAL	1	CEP120
TCGA.AA.A00N.01A	5	123973500	123985246	7	-0.8382	SMALL-LOSS	FOCAL	1	ZNF608
TCGA.AA.3850	5	124569337	125117436	210	-0.83035	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	124745438	125374290	245	-1.1322	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	5	125118777	125374290	112	-1.08165	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	5	125828526	126250622	44	-0.5458	SMALL-LOSS	FOCAL	6	"ALDH7A1,GRAMD3,LMNB1,MARCH3,PHAX,TEX43"
TCGA.AA.A017.01A	5	125903914	125971694	16	-0.6751	SMALL-LOSS	FOCAL	3	"ALDH7A1,PHAX,TEX43"
TCGA.CK.5914.01A	5	125911044	126141214	20	-0.5917	SMALL-LOSS	FOCAL	4	"ALDH7A1,LMNB1,PHAX,TEX43"
TCGA.AA.A00N.01A	5	125915663	125960225	12	-1.074	SMALL-LOSS	FOCAL	2	"ALDH7A1,PHAX"
TCGA.AA.A00N.01A	5	126168339	126206278	3	-0.6513	SMALL-LOSS	FOCAL	2	"LMNB1,MARCH3"
TCGA.AG.4009.01A	5	126792773	126887350	9	-0.7963	SMALL-LOSS	FOCAL	2	"MEGF10,PRRC1"
TCGA.AA.A00N.01A	5	126859145	126869278	5	-1.1299	SMALL-LOSS	FOCAL	1	PRRC1
TCGA.CK.5914.01A	5	126859145	127469810	15	-0.5251	SMALL-LOSS	FOCAL	3	"CTXN3,PRRC1,SLC12A2"
TCGA.CM.6170	5	127527645	127627208	31	-0.5933	SMALL-LOSS	FOCAL	1	FBN2
TCGA.CM.6170	5	127706045	128367987	222	-0.5918	SMALL-LOSS	FOCAL	2	"FBN2,SLC27A6"
TCGA.AA.3850	5	127813873	130378069	605	-0.58275	SMALL-LOSS	FOCAL	6	"ADAMTS19,CHSY3,FBN2,ISOC1,KIAA1024L,SLC27A6"
TCGA.AG.4009.01A	5	127863513	127873003	4	-0.5818	SMALL-LOSS	FOCAL	1	FBN2
TCGA.AG.4009.01A	5	128440682	128796049	4	-0.7091	SMALL-LOSS	FOCAL	1	ISOC1
TCGA.AG.4009.01A	5	129072719	130500738	7	-0.7697	SMALL-LOSS	FOCAL	4	"ADAMTS19,CHSY3,HINT1,KIAA1024L"
TCGA.AM.5820	5	129229208	129764764	109	-0.8353	SMALL-LOSS	FOCAL	1	CHSY3
TCGA.AG.3909.01A	5	129240952	130500738	6	-0.5675	SMALL-LOSS	FOCAL	2	"CHSY3,HINT1"
TCGA.RU.A8FL	5	129470478	129474099	4	-0.9472	SMALL-LOSS	FOCAL	1	CHSY3
TCGA.AM.5820	5	130572860	130585845	4	-1.2292	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3556	5	130813376	131110124	47	-0.6436	SMALL-LOSS	FOCAL	2	"FNIP1,RAPGEF6"
TCGA.AG.A01W.01A	5	131340189	131354399	8	-0.7827	SMALL-LOSS	FOCAL	1	ACSL6
TCGA.AA.3982	5	131457027	131485103	6	-0.7991	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	5	131539390	131877481	45	-0.6202	SMALL-LOSS	FOCAL	6	"IL5,IRF1,P4HA2,PDLIM4,SLC22A4,SLC22A5"
TCGA.AG.4009.01A	5	131713795	131825041	20	-0.7147	SMALL-LOSS	FOCAL	2	"IRF1,SLC22A5"
TCGA.AA.A010.01A	5	131714039	131796262	13	-0.6645	SMALL-LOSS	FOCAL	1	SLC22A5
TCGA.A6.3808.01A	5	131729819	132015354	51	-0.7186	SMALL-LOSS	FOCAL	6	"IL13,IL4,IL5,IRF1,RAD50,SLC22A5"
TCGA.AA.A00N.01A	5	131805652	131894926	15	-1.0067	SMALL-LOSS	FOCAL	3	"IL5,IRF1,RAD50"
TCGA.AA.A00N.01A	5	131972753	132009701	10	-0.6964	SMALL-LOSS	FOCAL	3	"IL13,IL4,RAD50"
TCGA.AG.3909.01A	5	132061765	132199842	23	-0.8611	SMALL-LOSS	FOCAL	6	"CCNI2,GDF9,KIF3A,SEPT8,SHROOM1,SOWAHA"
TCGA.CK.5914.01A	5	132069870	132203136	28	-0.734	SMALL-LOSS	FOCAL	7	"CCNI2,GDF9,KIF3A,SEPT8,SHROOM1,SOWAHA,UQCRQ"
TCGA.AA.A010.01A	5	132083989	132160255	20	-0.9382	SMALL-LOSS	FOCAL	4	"CCNI2,SEPT8,SHROOM1,SOWAHA"
TCGA.F5.6863	5	132085976	132272355	33	-0.6896	SMALL-LOSS	FOCAL	8	"AFF4,CCNI2,GDF9,LEAP2,SEPT8,SHROOM1,SOWAHA,UQCRQ"
TCGA.AG.4009.01A	5	132094414	132160255	12	-1.2597	SMALL-LOSS	FOCAL	3	"SEPT8,SHROOM1,SOWAHA"
TCGA.AG.A01W.01A	5	132252618	132467806	37	-0.6285	SMALL-LOSS	FOCAL	3	"AFF4,HSPA4,ZCCHC10"
TCGA.AG.3611.01A	5	132560805	132585062	4	-0.7879	SMALL-LOSS	FOCAL	1	FSTL4
TCGA.AA.A010.01A	5	133309414	133481842	16	-1.2155	SMALL-LOSS	FOCAL	2	"TCF7,VDAC1"
TCGA.AA.A00N.01A	5	133695551	133745542	10	-1.2874	SMALL-LOSS	FOCAL	3	"CDKL3,CDKN2AIPNL,UBE2B"
TCGA.AG.3909.01A	5	133702003	133745542	7	-0.8059	SMALL-LOSS	FOCAL	3	"CDKL3,CDKN2AIPNL,UBE2B"
TCGA.AA.A00N.01A	5	133942588	133996761	8	-0.9027	SMALL-LOSS	FOCAL	2	"SAR1B,SEC24A"
TCGA.AA.A00N.01A	5	134076766	134113251	9	-0.9928	SMALL-LOSS	FOCAL	2	"CAMLG,DDX46"
TCGA.CK.5914.01A	5	134146860	134245978	21	-0.8232	SMALL-LOSS	FOCAL	4	"C5orf24,DDX46,PCBD2,TXNDC15"
TCGA.AG.3909.01A	5	134190614	134245978	12	-0.823	SMALL-LOSS	FOCAL	3	"C5orf24,PCBD2,TXNDC15"
TCGA.AG.4009.01A	5	134223338	134245978	6	-0.9487	SMALL-LOSS	FOCAL	2	"PCBD2,TXNDC15"
TCGA.AA.A01Q.01A	5	134346032	134688586	9	-0.5882	SMALL-LOSS	FOCAL	4	"C5orf66,CATSPER3,H2AFY,PITX1"
TCGA.AG.4009.01A	5	134347159	134366969	3	-0.9068	SMALL-LOSS	FOCAL	2	"CATSPER3,PITX1"
TCGA.AA.3941	5	135270904	135277502	7	-1.2219	SMALL-LOSS	FOCAL	1	FBXL21
TCGA.AG.4009.01A	5	135272267	135283018	5	-0.8237	SMALL-LOSS	FOCAL	2	"FBXL21,LECT2"
TCGA.CK.5914.01A	5	135272267	135283018	5	-0.9142	SMALL-LOSS	FOCAL	2	"FBXL21,LECT2"
TCGA.DM.A1HA	5	135988815	136542392	233	-0.9888	SMALL-LOSS	FOCAL	1	SPOCK1
TCGA.CK.5914.01A	5	137211518	137235163	13	-0.6152	SMALL-LOSS	FOCAL	2	"MYOT,PKD2L2"
TCGA.AG.3909.01A	5	137213162	137235163	11	-0.6171	SMALL-LOSS	FOCAL	2	"MYOT,PKD2L2"
TCGA.AA.A01K.01A	5	137216428	137235163	10	-1.0931	SMALL-LOSS	FOCAL	2	"MYOT,PKD2L2"
TCGA.AG.A01W.01A	5	137348815	137542117	50	-0.5837	SMALL-LOSS	FOCAL	6	"BRD8,CDC23,FAM13B,KIF20A,NME5,WNT8A"
TCGA.AG.3909.01A	5	137464119	137480804	6	-0.5513	SMALL-LOSS	FOCAL	2	"BRD8,NME5"
TCGA.CK.5914.01A	5	137464119	137486406	9	-0.6678	SMALL-LOSS	FOCAL	2	"BRD8,NME5"
TCGA.CK.5914.01A	5	137542122	137682344	24	-0.6643	SMALL-LOSS	FOCAL	4	"CDC23,CDC25C,FAM53C,GFRA3"
TCGA.AG.A01W.01A	5	137550634	137694559	29	-0.6307	SMALL-LOSS	FOCAL	4	"CDC25C,FAM53C,GFRA3,KDM3B"
TCGA.AG.3909.01A	5	137588604	137599932	7	-0.846	SMALL-LOSS	FOCAL	1	GFRA3
TCGA.AA.A00N.01A	5	137588604	137682344	23	-1.02	SMALL-LOSS	FOCAL	3	"CDC25C,FAM53C,GFRA3"
TCGA.AG.3909.01A	5	137664107	137682344	7	-0.9688	SMALL-LOSS	FOCAL	2	"CDC25C,FAM53C"
TCGA.AG.4009.01A	5	137666649	137682344	5	-0.6509	SMALL-LOSS	FOCAL	2	"CDC25C,FAM53C"
TCGA.AA.A00F.01A	5	137721669	137735497	5	-0.5368	SMALL-LOSS	FOCAL	1	KDM3B
TCGA.AG.A01W.01A	5	137736224	137794966	22	-0.8878	SMALL-LOSS	FOCAL	2	"KDM3B,REEP2"
TCGA.AA.A010.01A	5	137750769	137756418	4	-1.1938	SMALL-LOSS	FOCAL	1	KDM3B
TCGA.AA.A00N.01A	5	137759757	138147821	46	-1.116	SMALL-LOSS	FOCAL	6	"CTNNA1,EGR1,ETF1,HSPA9,KDM3B,REEP2"
TCGA.AA.A010.01A	5	137774817	137847127	13	-1.2823	SMALL-LOSS	FOCAL	3	"EGR1,ETF1,REEP2"
TCGA.AG.4009.01A	5	137776691	137802395	7	-1.1186	SMALL-LOSS	FOCAL	2	"EGR1,REEP2"
TCGA.AG.A01W.01A	5	137871901	137882233	9	-0.9849	SMALL-LOSS	FOCAL	1	ETF1
TCGA.AG.3909.01A	5	137891667	138147821	19	-1.2629	SMALL-LOSS	FOCAL	2	"CTNNA1,HSPA9"
TCGA.CK.5914.01A	5	137902261	138147821	12	-0.867	SMALL-LOSS	FOCAL	2	"CTNNA1,HSPA9"
TCGA.AG.A01W.01A	5	137930171	138146779	9	-0.6539	SMALL-LOSS	FOCAL	1	CTNNA1
TCGA.AG.4009.01A	5	138117562	138163212	6	-1.2081	SMALL-LOSS	FOCAL	1	CTNNA1
TCGA.A6.2681	5	138701566	138944603	14	-0.5633	SMALL-LOSS	FOCAL	9	"DNAJC18,ECSCR,MZB1,PAIP2,PROB1,SLC23A1,SPATA24,TMEM173,UBE2D2"
TCGA.AA.A00N.01A	5	138749785	138773012	7	-1.2766	SMALL-LOSS	FOCAL	1	DNAJC18
TCGA.AA.A010.01A	5	138979937	139193717	9	-0.6377	SMALL-LOSS	FOCAL	3	"CXXC5,PSD2,UBE2D2"
TCGA.AA.A01Q.01A	5	139189025	139245076	21	-0.7138	SMALL-LOSS	FOCAL	2	"NRG2,PSD2"
TCGA.AA.A01Q.01A	5	139495958	139507940	6	-0.7108	SMALL-LOSS	FOCAL	2	"IGIP,PURA"
TCGA.CK.5914.01A	5	139502935	139507940	7	-0.7714	SMALL-LOSS	FOCAL	1	IGIP
TCGA.AG.A01W.01A	5	139901798	139920033	10	-0.8397	SMALL-LOSS	FOCAL	2	"ANKHD1,ANKHD1-EIF4EBP3"
TCGA.AA.A00Q.01A	5	139914900	140011409	23	-0.9465	SMALL-LOSS	FOCAL	7	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,EIF4EBP3,SLC35A4,SRA1"
TCGA.AG.3909.01A	5	139917634	139943126	16	-0.5926	SMALL-LOSS	FOCAL	5	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,EIF4EBP3,SRA1"
TCGA.AG.A01W.01A	5	140008184	140024656	15	-0.9661	SMALL-LOSS	FOCAL	2	"CD14,TMCO6"
TCGA.AG.3909.01A	5	140021209	140062638	41	-0.9494	SMALL-LOSS	FOCAL	6	"DND1,HARS,IK,NDUFA2,TMCO6,WDR55"
TCGA.CK.5914.01A	5	140021853	140041711	25	-1.1802	SMALL-LOSS	FOCAL	3	"IK,NDUFA2,TMCO6"
TCGA.AA.A010.01A	5	140027423	140070394	33	-0.5197	SMALL-LOSS	FOCAL	4	"DND1,HARS,IK,WDR55"
TCGA.AG.A01W.01A	5	140038733	140051377	6	-0.7603	SMALL-LOSS	FOCAL	3	"DND1,IK,WDR55"
TCGA.AF.3914.01A	5	140047781	140056198	8	-0.9885	SMALL-LOSS	FOCAL	3	"DND1,HARS,WDR55"
TCGA.AG.4009.01A	5	140047781	140062638	14	-0.7664	SMALL-LOSS	FOCAL	3	"DND1,HARS,WDR55"
TCGA.AA.A00L.01A	5	140052827	140056931	6	-1.0381	SMALL-LOSS	FOCAL	2	"DND1,HARS"
TCGA.AG.3611.01A	5	140165824	140187124	13	-0.6447	SMALL-LOSS	FOCAL	4	"PCDHA1,PCDHA2,PCDHA3,PCDHA4"
TCGA.AG.3891.01A	5	140165824	140215632	22	-0.8825	SMALL-LOSS	FOCAL	7	"PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7"
TCGA.AG.3611.01A	5	140187534	140235985	17	-1.0124	SMALL-LOSS	FOCAL	10	"PCDHA1,PCDHA10,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.AG.3605.01A	5	140235985	140237299	3	-0.906	SMALL-LOSS	FOCAL	10	"PCDHA1,PCDHA10,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9"
TCGA.F5.6811.01A	5	140553882	140554190	2	-0.8863	SMALL-LOSS	FOCAL	1	PCDHB7
TCGA.CM.6165.01A	5	140554410	140559172	4	-0.6786	SMALL-LOSS	FOCAL	2	"PCDHB7,PCDHB8"
TCGA.AA.3967.01A	5	140950932	141000969	18	-0.7291	SMALL-LOSS	FOCAL	2	"DIAPH1,HDAC3"
TCGA.AF.3914.01A	5	140967727	141018303	13	-0.9326	SMALL-LOSS	FOCAL	3	"DIAPH1,HDAC3,RELL2"
TCGA.AA.A010.01A	5	141000969	141014331	9	-1.0856	SMALL-LOSS	FOCAL	1	HDAC3
TCGA.AG.4009.01A	5	141000969	141018303	12	-1.2502	SMALL-LOSS	FOCAL	2	"HDAC3,RELL2"
TCGA.CK.5914.01A	5	141000969	141018303	12	-0.9708	SMALL-LOSS	FOCAL	2	"HDAC3,RELL2"
TCGA.AG.3909.01A	5	141000969	141304098	54	-1.0433	SMALL-LOSS	FOCAL	6	"ARAP3,FCHSD1,HDAC3,KIAA0141,PCDH1,RELL2"
TCGA.AG.A01W.01A	5	141011018	141018070	6	-1.0868	SMALL-LOSS	FOCAL	2	"HDAC3,RELL2"
TCGA.AA.A00N.01A	5	141016079	141030545	19	-0.8595	SMALL-LOSS	FOCAL	3	"FCHSD1,HDAC3,RELL2"
TCGA.AG.4009.01A	5	141018979	141025288	8	-0.7807	SMALL-LOSS	FOCAL	2	"FCHSD1,RELL2"
TCGA.CK.5914.01A	5	141335689	141511729	16	-0.8556	SMALL-LOSS	FOCAL	4	"GNPDA1,NDFIP1,PCDH12,RNF14"
TCGA.AA.A00D.01A	5	142513485	142689613	11	-1.1108	SMALL-LOSS	FOCAL	2	"ARHGAP26,NR3C1"
TCGA.AA.A00D.01A	5	142693524	145547641	58	-0.58	SMALL-LOSS	FOCAL	9	"GRXCR2,HMHB1,KCTD16,LARS,NR3C1,PLAC8L1,PRELID2,SH3RF2,YIPF5"
TCGA.AA.3850	5	142726169	145044492	738	-0.55785	SMALL-LOSS	FOCAL	4	"HMHB1,KCTD16,NR3C1,YIPF5"
TCGA.AA.3941	5	142726169	145052559	741	-0.554	SMALL-LOSS	FOCAL	4	"HMHB1,KCTD16,NR3C1,YIPF5"
TCGA.CA.5254	5	144486241	144514289	19	-1.2355	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A0XD	5	145131947	145218777	28	-0.7111	SMALL-LOSS	FOCAL	1	PRELID2
TCGA.AG.3611.01A	5	145197454	145239246	6	-0.7656	SMALL-LOSS	FOCAL	1	PRELID2
TCGA.AA.3844	5	145504346	145508339	4	-0.9619	SMALL-LOSS	FOCAL	1	LARS
TCGA.A6.3808.01A	5	145512409	145894749	64	-0.6592	SMALL-LOSS	FOCAL	5	"GPR151,LARS,POU4F3,RBM27,TCERG1"
TCGA.AG.3909.01A	5	145598516	145616834	7	-1.2578	SMALL-LOSS	FOCAL	1	RBM27
TCGA.AG.A01W.01A	5	145614682	145645647	12	-0.6554	SMALL-LOSS	FOCAL	1	RBM27
TCGA.AA.A00N.01A	5	145718624	145859350	13	-0.8278	SMALL-LOSS	FOCAL	2	"POU4F3,TCERG1"
TCGA.AG.3891.01A	5	145826844	145843123	5	-0.8	SMALL-LOSS	FOCAL	1	TCERG1
TCGA.AG.3906.01A	5	145834572	145843123	4	-0.6122	SMALL-LOSS	FOCAL	1	TCERG1
TCGA.AG.3909.01A	5	145834572	145851004	8	-0.9975	SMALL-LOSS	FOCAL	1	TCERG1
TCGA.AA.A00D.01A	5	145894380	146781062	15	-0.5938	SMALL-LOSS	FOCAL	4	"DPYSL3,GPR151,PPP2R2B,STK32A"
TCGA.AA.A00D.01A	5	146971173	147040491	19	-1.0824	SMALL-LOSS	FOCAL	1	JAKMIP2
TCGA.AA.3850	5	147353966	148100234	252	-0.71425	SMALL-LOSS	FOCAL	8	"FBXO38,HTR4,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9"
TCGA.A6.3808.01A	5	147480857	147506523	17	-1.0432	SMALL-LOSS	FOCAL	1	SPINK5
TCGA.AA.A00N.01A	5	148016468	148207803	5	-1.1449	SMALL-LOSS	FOCAL	2	"ADRB2,HTR4"
TCGA.CK.5914.01A	5	148206348	148207803	4	-0.8968	SMALL-LOSS	FOCAL	1	ADRB2
TCGA.AG.3909.01A	5	148719480	148758682	12	-0.5779	SMALL-LOSS	FOCAL	4	"AFAP1L1,GRPEL2,IL17B,PCYOX1L"
TCGA.AA.A00N.01A	5	148727798	148758682	11	-0.9315	SMALL-LOSS	FOCAL	3	"GRPEL2,IL17B,PCYOX1L"
TCGA.DM.A28A	5	148902337	149020165	37	-0.6194	SMALL-LOSS	FOCAL	2	"ARHGEF37,CSNK1A1"
TCGA.AA.A00N.01A	5	149301139	149385989	11	-0.9423	SMALL-LOSS	FOCAL	4	"HMGXB3,PDE6A,SLC26A2,TIGD6"
TCGA.CK.5914.01A	5	149301139	149385989	11	-0.7038	SMALL-LOSS	FOCAL	4	"HMGXB3,PDE6A,SLC26A2,TIGD6"
TCGA.AG.3909.01A	5	149310572	149375654	8	-0.6473	SMALL-LOSS	FOCAL	3	"PDE6A,SLC26A2,TIGD6"
TCGA.AA.3850	5	149394472	149399189	6	-0.61395	SMALL-LOSS	FOCAL	1	HMGXB3
TCGA.AG.4009.01A	5	149669056	149681629	4	-0.9271	SMALL-LOSS	FOCAL	2	"ARSI,CAMK2A"
TCGA.AA.A00N.01A	5	150030246	150078717	15	-0.5175	SMALL-LOSS	FOCAL	3	"MYOZ3,RBM22,SYNPO"
TCGA.AA.3967.01A	5	150079936	150099205	6	-0.7332	SMALL-LOSS	FOCAL	2	"DCTN4,RBM22"
TCGA.AA.A010.01A	5	150646275	150718562	18	-0.6367	SMALL-LOSS	FOCAL	3	"GM2A,SLC36A2,SLC36A3"
TCGA.AG.4009.01A	5	150678103	150704825	5	-0.5674	SMALL-LOSS	FOCAL	2	"SLC36A2,SLC36A3"
TCGA.AA.3844	5	150920565	150921968	3	-0.5534	SMALL-LOSS	FOCAL	1	FAT2
TCGA.AA.A010.01A	5	151125876	151179729	12	-0.8455	SMALL-LOSS	FOCAL	3	"ATOX1,G3BP1,LOC100652758"
TCGA.AA.3811	5	151306936	151317279	8	-1.2099	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	151423926	152817362	488	-0.6377	SMALL-LOSS	FOCAL	1	NMUR2
TCGA.CM.6163	5	151582811	151583409	3	-0.9334	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D9	5	151582811	151583409	3	-1.1153	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6170	5	151659404	151662616	3	-0.95	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	153641572	153642669	6	-0.7992	SMALL-LOSS	FOCAL	1	GALNT10
TCGA.AA.3982	5	153641934	153642669	5	-0.8889	SMALL-LOSS	FOCAL	1	GALNT10
TCGA.NH.A6GA	5	153774495	153777217	4	-1.1444	SMALL-LOSS	FOCAL	1	GALNT10
TCGA.AA.A010.01A	5	153826114	154172135	11	-0.5839	SMALL-LOSS	FOCAL	3	"HAND1,LARP1,SAP30L"
TCGA.AA.A00N.01A	5	153826114	154174696	14	-0.8993	SMALL-LOSS	FOCAL	3	"HAND1,LARP1,SAP30L"
TCGA.AG.3909.01A	5	153830649	154181547	14	-0.6667	SMALL-LOSS	FOCAL	3	"HAND1,LARP1,SAP30L"
TCGA.AG.4009.01A	5	153830649	154193400	21	-0.5742	SMALL-LOSS	FOCAL	3	"HAND1,LARP1,SAP30L"
TCGA.AA.A00N.01A	5	154242792	154252052	5	-1.2422	SMALL-LOSS	FOCAL	1	CNOT8
TCGA.AA.A00N.01A	5	154297430	154393381	19	-0.8006	SMALL-LOSS	FOCAL	3	"GEMIN5,KIF4B,MRPL22"
TCGA.CK.5914.01A	5	154299500	154393381	18	-0.5768	SMALL-LOSS	FOCAL	3	"GEMIN5,KIF4B,MRPL22"
TCGA.AA.3941	5	154460277	154473487	3	-1.2166	SMALL-LOSS	FOCAL	0	None
TCGA.AF.A56N	5	154506264	155580442	386	-0.7649	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	5	154595485	154596266	3	-1.2585	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	154689634	154853928	86	-0.6545	SMALL-LOSS	FOCAL	0	None
TCGA.AF.A56L	5	155580442	155583136	4	-1.0968	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GA	5	155580442	155583136	4	-0.9346	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3611.01A	5	156649824	156679556	11	-0.5362	SMALL-LOSS	FOCAL	1	ITK
TCGA.AA.A010.01A	5	156655252	156668592	5	-0.967	SMALL-LOSS	FOCAL	1	ITK
TCGA.AA.A00N.01A	5	156890050	156907897	6	-0.8087	SMALL-LOSS	FOCAL	2	"ADAM19,NIPAL4"
TCGA.AG.3909.01A	5	156890050	156907897	6	-0.9822	SMALL-LOSS	FOCAL	2	"ADAM19,NIPAL4"
TCGA.AA.A00N.01A	5	156964892	157181870	21	-0.8187	SMALL-LOSS	FOCAL	5	"ADAM19,C5orf52,LSM11,SOX30,THG1L"
TCGA.CK.5914.01A	5	156991325	157181870	20	-0.7185	SMALL-LOSS	FOCAL	5	"ADAM19,C5orf52,LSM11,SOX30,THG1L"
TCGA.AG.4009.01A	5	157158402	157181870	9	-0.7412	SMALL-LOSS	FOCAL	2	"LSM11,THG1L"
TCGA.AA.3850	5	157233520	157234476	3	-0.91475	SMALL-LOSS	FOCAL	1	CLINT1
TCGA.AA.A00F.01A	5	158126044	158266977	10	-0.5933	SMALL-LOSS	FOCAL	1	EBF1
TCGA.AG.3611.01A	5	158134939	158526336	15	-0.7076	SMALL-LOSS	FOCAL	1	EBF1
TCGA.AA.A00N.01A	5	158500362	158526336	6	-1.1873	SMALL-LOSS	FOCAL	1	EBF1
TCGA.CK.5914.01A	5	158511641	159437496	34	-0.5509	SMALL-LOSS	FOCAL	6	"ADRA1B,EBF1,IL12B,RNF145,TTC1,UBLCP1"
TCGA.AG.4009.01A	5	158608916	158634688	4	-0.9358	SMALL-LOSS	FOCAL	1	RNF145
TCGA.AA.A00N.01A	5	158621684	159343862	19	-1.0181	SMALL-LOSS	FOCAL	4	"ADRA1B,IL12B,RNF145,UBLCP1"
TCGA.AA.3664	5	158829526	159297655	193	-0.7475	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	5	159820701	159855572	20	-0.6098	SMALL-LOSS	FOCAL	3	"PTTG1,SLU7,ZBED8"
TCGA.AA.3941	5	160493674	162378334	520	-0.6838	SMALL-LOSS	FOCAL	4	"GABRA1,GABRA6,GABRB2,GABRG2"
TCGA.CM.5341	5	160531763	160533423	3	-1.1703	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	5	160624457	162384063	468	-0.80035	SMALL-LOSS	FOCAL	4	"GABRA1,GABRA6,GABRB2,GABRG2"
TCGA.AA.A00Q.01A	5	160721036	161520797	28	-0.6018	SMALL-LOSS	FOCAL	4	"GABRA1,GABRA6,GABRB2,GABRG2"
TCGA.AA.A00L.01A	5	160837933	161580072	31	-0.8175	SMALL-LOSS	FOCAL	4	"GABRA1,GABRA6,GABRB2,GABRG2"
TCGA.AA.3947	5	160878442	161820632	202	-0.829	SMALL-LOSS	FOCAL	4	"GABRA1,GABRA6,GABRB2,GABRG2"
TCGA.AA.A00F.01A	5	161115984	161580072	25	-0.5969	SMALL-LOSS	FOCAL	3	"GABRA1,GABRA6,GABRG2"
TCGA.AA.A00D.01A	5	161117165	161580072	23	-0.9941	SMALL-LOSS	FOCAL	3	"GABRA1,GABRA6,GABRG2"
TCGA.AG.A00C.01A	5	161277762	161580072	19	-1.0262	SMALL-LOSS	FOCAL	2	"GABRA1,GABRG2"
TCGA.AA.A00Q.01A	5	161522438	161578682	7	-1.12	SMALL-LOSS	FOCAL	1	GABRG2
TCGA.AA.A00Q.01A	5	161580072	162945152	32	-0.539	SMALL-LOSS	FOCAL	5	"CCNG1,GABRG2,HMMR,MAT2B,NUDCD2"
TCGA.CM.6170	5	162531171	166682689	1356	-0.6934	SMALL-LOSS	FOCAL	4	"CCNG1,HMMR,MAT2B,NUDCD2"
TCGA.D5.6932	5	162671159	162699080	15	-1.1154	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	5	162866224	162898147	13	-0.8664	SMALL-LOSS	FOCAL	3	"CCNG1,HMMR,NUDCD2"
TCGA.CK.5914.01A	5	162866224	162945152	31	-0.7278	SMALL-LOSS	FOCAL	4	"CCNG1,HMMR,MAT2B,NUDCD2"
TCGA.AG.3909.01A	5	162930319	162945152	7	-0.933	SMALL-LOSS	FOCAL	1	MAT2B
TCGA.DY.A1DC	5	164074139	164079147	3	-0.9045	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	5	164900841	165107161	85	-0.7818	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5344	5	164961752	167128029	762	-0.6013	SMALL-LOSS	FOCAL	1	TENM2
TCGA.CM.6172	5	166379771	166986826	194	-0.6995	SMALL-LOSS	FOCAL	1	TENM2
TCGA.F4.6808	5	166524109	168958481	1094	-0.7208	SMALL-LOSS	FOCAL	5	"PANK3,RARS,SLIT3,TENM2,WWC1"
TCGA.CM.6170	5	166826031	167086900	110	-0.6419	SMALL-LOSS	FOCAL	1	TENM2
TCGA.CM.6170	5	167204468	167453655	122	-0.6799	SMALL-LOSS	FOCAL	1	TENM2
TCGA.AG.A01L.01A	5	167379544	168620417	101	-0.5693	SMALL-LOSS	FOCAL	5	"PANK3,RARS,SLIT3,TENM2,WWC1"
TCGA.AA.3982	5	167499768	167499831	3	-0.9077	SMALL-LOSS	FOCAL	1	TENM2
TCGA.AA.3982	5	167565944	167573384	6	-0.7877	SMALL-LOSS	FOCAL	1	TENM2
TCGA.AZ.4684.01A	5	167630657	168310208	90	-0.8683	SMALL-LOSS	FOCAL	5	"PANK3,RARS,SLIT3,TENM2,WWC1"
TCGA.AA.3941	5	167636981	167637754	5	-0.8999	SMALL-LOSS	FOCAL	1	TENM2
TCGA.AA.A00Q.01A	5	167719111	167858210	15	-0.5289	SMALL-LOSS	FOCAL	1	WWC1
TCGA.AG.4009.01A	5	167933680	168006184	13	-0.548	SMALL-LOSS	FOCAL	2	"PANK3,RARS"
TCGA.A6.6653	5	168140721	168171470	13	-0.5303	SMALL-LOSS	FOCAL	1	SLIT3
TCGA.AG.A00C.01A	5	168149195	168176426	5	-0.8846	SMALL-LOSS	FOCAL	1	SLIT3
TCGA.AG.A01L.01A	5	168671647	169108696	18	-0.9238	SMALL-LOSS	FOCAL	3	"DOCK2,SLIT3,SPDL1"
TCGA.CM.6170	5	168912845	169647830	412	-0.7896	SMALL-LOSS	FOCAL	4	"DOCK2,FAM196B,FOXI1,SPDL1"
TCGA.AG.A01L.01A	5	169111163	169267707	19	-0.581	SMALL-LOSS	FOCAL	1	DOCK2
TCGA.A6.6653	5	169354430	169400393	38	-0.5781	SMALL-LOSS	FOCAL	2	"DOCK2,FAM196B"
TCGA.AA.3982	5	170318865	170423533	15	-0.5904	SMALL-LOSS	FOCAL	1	RANBP17
TCGA.AA.A00N.01A	5	170667885	170814884	10	-0.5891	SMALL-LOSS	FOCAL	3	"NPM1,RANBP17,TLX3"
TCGA.AF.3914.01A	5	170722844	170876101	19	-0.8159	SMALL-LOSS	FOCAL	4	"FGF18,NPM1,RANBP17,TLX3"
TCGA.AG.3909.01A	5	170816993	170883511	14	-1.1188	SMALL-LOSS	FOCAL	2	"FGF18,NPM1"
TCGA.AA.A01Q.01A	5	170819663	170883511	9	-0.6258	SMALL-LOSS	FOCAL	2	"FGF18,NPM1"
TCGA.AG.4009.01A	5	170827088	170883511	10	-0.9722	SMALL-LOSS	FOCAL	2	"FGF18,NPM1"
TCGA.AA.A00N.01A	5	170847119	170876101	3	-0.5616	SMALL-LOSS	FOCAL	1	FGF18
TCGA.A6.6648	5	170867374	170913055	11	-1.0519	SMALL-LOSS	FOCAL	1	FGF18
TCGA.AG.A01W.01A	5	171270130	171781976	40	-0.6549	SMALL-LOSS	FOCAL	5	"EFCAB9,FBXW11,SH3PXD2B,STK10,UBTD2"
TCGA.AA.A00F.01A	5	171481525	171484304	3	-0.9693	SMALL-LOSS	FOCAL	1	STK10
TCGA.CK.5914.01A	5	172113127	172197124	5	-0.8472	SMALL-LOSS	FOCAL	3	"DUSP1,LOC101928093,NEURL1B"
TCGA.AG.4009.01A	5	172195768	172197124	3	-1.2679	SMALL-LOSS	FOCAL	1	DUSP1
TCGA.AG.3909.01A	5	172661713	173317186	10	-0.8445	SMALL-LOSS	FOCAL	4	"BOD1,CPEB4,NKX2-5,STC2"
TCGA.AA.3818	5	173205057	173206215	7	-1.0541	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2693	5	173205057	173206215	7	-0.8829	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5820	5	173205057	173206215	7	-0.7587	SMALL-LOSS	FOCAL	0	None
TCGA.CL.4957	5	173205057	173206215	7	-0.9592	SMALL-LOSS	FOCAL	0	None
TCGA.AY.5543	5	173640708	173641494	4	-0.8986	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	5	173685518	173690471	11	-0.6489	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	5	173685518	173694721	13	-1.1338	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4022	5	173936212	174136428	104	-0.7716	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6648	5	174135862	174185909	12	-0.8781	SMALL-LOSS	FOCAL	1	MSX2
TCGA.AA.A00N.01A	5	174151635	174919056	6	-1.1593	SMALL-LOSS	FOCAL	3	"DRD1,MSX2,SFXN1"
TCGA.AG.3909.01A	5	174156120	174919056	5	-1.0467	SMALL-LOSS	FOCAL	3	"DRD1,MSX2,SFXN1"
TCGA.AG.4009.01A	5	174156120	174937065	7	-0.7506	SMALL-LOSS	FOCAL	3	"DRD1,MSX2,SFXN1"
TCGA.AA.3941	5	174652235	174654983	6	-0.8332	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	5	175388002	175511880	4	-0.9388	SMALL-LOSS	FOCAL	2	"FAM153B,THOC3"
TCGA.AG.4009.01A	5	175540736	175798696	22	-0.7232	SMALL-LOSS	FOCAL	4	"ARL10,FAM153B,KIAA1191,SIMC1"
TCGA.AA.A010.01A	5	175665465	175786396	19	-1.1863	SMALL-LOSS	FOCAL	2	"KIAA1191,SIMC1"
TCGA.AG.A01W.01A	5	175769787	175866329	11	-0.5467	SMALL-LOSS	FOCAL	6	"ARL10,CLTB,HIGD2A,KIAA1191,NOP16,SIMC1"
TCGA.AG.3909.01A	5	175813774	175837180	9	-1.2479	SMALL-LOSS	FOCAL	3	"CLTB,HIGD2A,NOP16"
TCGA.AM.5820	5	175862741	175921460	11	-0.5885	SMALL-LOSS	FOCAL	1	FAF2
TCGA.AG.A01W.01A	5	175936978	175950786	11	-0.9839	SMALL-LOSS	FOCAL	1	FAF2
TCGA.AA.A010.01A	5	175955971	176008325	17	-1.1743	SMALL-LOSS	FOCAL	2	"CDHR2,RNF44"
TCGA.CK.5914.01A	5	175998170	176295747	39	-0.6393	SMALL-LOSS	FOCAL	6	"CDHR2,EIF4E1B,GPRIN1,SNCB,TSPAN17,UNC5A"
TCGA.AG.4009.01A	5	176017037	176078551	12	-0.9437	SMALL-LOSS	FOCAL	5	"CDHR2,EIF4E1B,GPRIN1,SNCB,TSPAN17"
TCGA.AA.A01Q.01A	5	176018179	176297332	23	-0.6087	SMALL-LOSS	FOCAL	6	"CDHR2,EIF4E1B,GPRIN1,SNCB,TSPAN17,UNC5A"
TCGA.AG.A01W.01A	5	176237844	176266664	15	-0.7242	SMALL-LOSS	FOCAL	1	UNC5A
TCGA.AA.3930.01A	5	176289586	176300952	5	-0.9168	SMALL-LOSS	FOCAL	1	UNC5A
TCGA.AG.3891.01A	5	176289586	176305268	9	-0.6274	SMALL-LOSS	FOCAL	1	UNC5A
TCGA.AG.3906.01A	5	176295084	176300952	5	-1.1171	SMALL-LOSS	FOCAL	1	UNC5A
TCGA.CK.5914.01A	5	176370285	176409421	9	-0.8688	SMALL-LOSS	FOCAL	1	UIMC1
TCGA.AG.3909.01A	5	176378423	176409421	8	-0.5529	SMALL-LOSS	FOCAL	1	UIMC1
TCGA.AF.3914.01A	5	176516548	176562063	10	-0.913	SMALL-LOSS	FOCAL	2	"FGFR4,NSD1"
TCGA.AG.3909.01A	5	176516548	176562063	10	-0.9575	SMALL-LOSS	FOCAL	2	"FGFR4,NSD1"
TCGA.AA.A01Q.01A	5	176728676	176761233	12	-0.5156	SMALL-LOSS	FOCAL	4	"LMAN2,MXD3,PRELID1,RAB24"
TCGA.AG.4009.01A	5	176792877	176910591	40	-0.9745	SMALL-LOSS	FOCAL	8	"DBN1,F12,GRK6,PDLIM7,PFN3,PRR7,RGS14,SLC34A1"
TCGA.AA.A01Q.01A	5	176812693	176899064	37	-0.8615	SMALL-LOSS	FOCAL	6	"DBN1,F12,GRK6,PFN3,PRR7,SLC34A1"
TCGA.AA.A010.01A	5	176823696	176831774	7	-1.0605	SMALL-LOSS	FOCAL	3	"F12,PFN3,SLC34A1"
TCGA.AF.3914.01A	5	176832024	176861835	10	-1.0534	SMALL-LOSS	FOCAL	2	"F12,GRK6"
TCGA.AF.3914.01A	5	176884401	176930014	17	-1.1726	SMALL-LOSS	FOCAL	3	"DBN1,DOK3,PDLIM7"
TCGA.AA.A010.01A	5	176900379	176918312	8	-1.2605	SMALL-LOSS	FOCAL	2	"DBN1,PDLIM7"
TCGA.AA.A01Q.01A	5	176935186	176942646	8	-0.7991	SMALL-LOSS	FOCAL	2	"DDX41,DOK3"
TCGA.D5.5538	5	177041771	177964788	191	-0.5863	SMALL-LOSS	FOCAL	8	"COL23A1,FAM153A,HNRNPAB,N4BP3,NHP2,PHYKPL,PROP1,RMND5B"
TCGA.AA.3495	5	177101770	178025086	206	-0.5679	SMALL-LOSS	FOCAL	8	"COL23A1,FAM153A,HNRNPAB,N4BP3,NHP2,PHYKPL,PROP1,RMND5B"
TCGA.AA.A01Q.01A	5	177151070	177659434	39	-0.6701	SMALL-LOSS	FOCAL	7	"FAM153A,HNRNPAB,N4BP3,NHP2,PHYKPL,PROP1,RMND5B"
TCGA.DM.A0XD	5	177390074	177400867	7	-1.2884	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	5	177546533	177672868	33	-0.8167	SMALL-LOSS	FOCAL	6	"COL23A1,HNRNPAB,N4BP3,NHP2,PHYKPL,RMND5B"
TCGA.AG.4009.01A	5	177577858	177658673	19	-1.2261	SMALL-LOSS	FOCAL	3	"HNRNPAB,NHP2,PHYKPL"
TCGA.AA.A00N.01A	5	177577858	177665644	20	-1.1237	SMALL-LOSS	FOCAL	4	"COL23A1,HNRNPAB,NHP2,PHYKPL"
TCGA.AA.A010.01A	5	177642229	177649806	3	-1.042	SMALL-LOSS	FOCAL	1	PHYKPL
TCGA.AA.A010.01A	5	177987615	178045540	10	-0.97	SMALL-LOSS	FOCAL	2	"CLK4,COL23A1"
TCGA.AA.A00N.01A	5	178030596	179036328	77	-0.8375	SMALL-LOSS	FOCAL	10	"ADAMTS2,CLK4,GRM6,RUFY1,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.CM.5344	5	178061715	178832324	279	-0.751	SMALL-LOSS	FOCAL	8	"ADAMTS2,GRM6,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A02H.01A	5	178987009	179143069	32	-1.1882	SMALL-LOSS	FOCAL	5	"C5orf60,CANX,CBY3,HNRNPH1,RUFY1"
TCGA.AZ.4684.01A	5	178989516	179021819	10	-1.2605	SMALL-LOSS	FOCAL	1	RUFY1
TCGA.AA.A01C.01A	5	178989516	179136847	31	-0.705	SMALL-LOSS	FOCAL	5	"C5orf60,CANX,CBY3,HNRNPH1,RUFY1"
TCGA.AA.3509.01A	5	178994415	179021819	9	-1.1749	SMALL-LOSS	FOCAL	1	RUFY1
TCGA.AG.A01W.01A	5	179001909	179069431	13	-1.0824	SMALL-LOSS	FOCAL	3	"C5orf60,HNRNPH1,RUFY1"
TCGA.AG.4009.01A	5	179042470	179249909	35	-0.6531	SMALL-LOSS	FOCAL	8	"C5orf60,CANX,CBY3,HNRNPH1,LTC4S,MAML1,MGAT4B,SQSTM1"
TCGA.AA.A01Q.01A	5	179290410	179299855	8	-1.1564	SMALL-LOSS	FOCAL	1	TBC1D9B
TCGA.DM.A0XD	5	179527640	179607387	25	-0.7331	SMALL-LOSS	FOCAL	1	RASGEF1C
TCGA.AG.3742	5	179618960	179628420	6	-1.1736	SMALL-LOSS	FOCAL	1	RASGEF1C
TCGA.CK.5914.01A	5	179762779	179956230	4	-0.9294	SMALL-LOSS	FOCAL	2	"CNOT6,GFPT2"
TCGA.NH.A6GA	5	180033030	180051002	4	-0.8906	SMALL-LOSS	FOCAL	1	FLT4
TCGA.CK.5914.01A	5	180035920	180277962	29	-0.6696	SMALL-LOSS	FOCAL	4	"FLT4,MGAT1,OR2Y1,ZFP62"
TCGA.D5.5539	5	180226515	180226672	3	-0.8081	SMALL-LOSS	FOCAL	1	MGAT1
TCGA.DM.A28M.01A	5	180375298	180431409	10	-0.9368	SMALL-LOSS	FOCAL	2	"BTNL3,BTNL8"
TCGA.AA.A00N.01A	5	180474929	180686963	35	-1.2915	SMALL-LOSS	FOCAL	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AG.A015.01A	5	180477046	180581924	6	-0.7719	SMALL-LOSS	FOCAL	2	"BTNL9,OR2V1"
TCGA.CK.5914.01A	5	180477046	180686963	33	-1.0001	SMALL-LOSS	FOCAL	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AA.A00Q.01A	5	180482343	180686963	30	-0.7659	SMALL-LOSS	FOCAL	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AA.A01Q.01A	5	180482343	180686963	30	-0.6276	SMALL-LOSS	FOCAL	7	"BTNL9,GNB2L1,OR2V1,OR2V2,TRIM41,TRIM52,TRIM7"
TCGA.AG.4009.01A	5	180684359	180686963	2	-0.7649	SMALL-LOSS	FOCAL	1	TRIM52
TCGA.AG.3575	6	203844	205877	4	-0.5758	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3854	6	203844	205919	5	-0.5149	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DF	6	203844	254282	39	-0.5499	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3858	6	203844	303016	43	-0.8643	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.CM.5341	6	279694	350370	13	-0.7431	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.A6.5666	6	279694	355197	16	-0.8613	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.DM.A1D0	6	279694	355197	15	-0.7314	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.DM.A1D9	6	279694	355197	15	-0.6412	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.DM.A28C	6	279694	382896	20	-0.61	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.CK.5914.01A	6	292464	1613243	50	-0.548	SMALL-LOSS	FOCAL	7	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,HUS1B,IRF4"
TCGA.AA.A00N.01A	6	292464	1624651	52	-0.5989	SMALL-LOSS	FOCAL	8	"DUSP22,EXOC2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4"
TCGA.DC.5337	6	303016	355197	14	-0.7259	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.NH.A6GB	6	303016	355197	14	-0.6956	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.DM.A285	6	303016	366332	13	-0.8606	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.CI.6620	6	303016	378702	16	-0.7024	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.D5.6530	6	303016	378702	17	-0.875	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.CM.6172	6	303016	384545	21	-0.5558	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.AA.A01K.01A	6	304543	629824	37	-0.6857	SMALL-LOSS	FOCAL	3	"DUSP22,EXOC2,IRF4"
TCGA.NH.A50T	6	315196	378702	15	-0.8836	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.D5.6535	6	315196	384520	18	-0.6344	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.AA.3556	6	315196	389629	24	-0.5957	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.A6.A565	6	328069	378702	11	-1.2313	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.F4.6569	6	329868	349385	5	-0.5849	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.DC.4745	6	329868	385055	14	-1.2604	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.AZ.5403	6	347165	378702	8	-0.8193	SMALL-LOSS	FOCAL	1	DUSP22
TCGA.AG.3882	6	382558	384520	3	-1.0797	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3858	6	382896	1402242	550	-0.7991	SMALL-LOSS	FOCAL	5	"EXOC2,FOXF2,FOXQ1,HUS1B,IRF4"
TCGA.AG.4009.01A	6	394784	407404	7	-1.021	SMALL-LOSS	FOCAL	1	IRF4
TCGA.AG.3909.01A	6	395790	404980	5	-0.5917	SMALL-LOSS	FOCAL	1	IRF4
TCGA.AG.3909.01A	6	407404	532432	7	-1.2714	SMALL-LOSS	FOCAL	2	"EXOC2,IRF4"
TCGA.AG.3909.01A	6	549125	610042	14	-0.664	SMALL-LOSS	FOCAL	1	EXOC2
TCGA.AD.A5EJ	6	771710	784679	6	-1.1217	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	6	811951	875731	31	-0.7205	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	6	1394914	1612029	3	-1.0913	SMALL-LOSS	FOCAL	2	"FOXC1,FOXF2"
TCGA.DM.A28A	6	1505510	1506155	3	-1.2366	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4614	6	1631214	1910715	131	-0.9066	SMALL-LOSS	FOCAL	1	GMDS
TCGA.T9.A92H	6	1683846	2230063	202	-0.7122	SMALL-LOSS	FOCAL	1	GMDS
TCGA.DM.A28A	6	1749927	2073378	120	-0.7918	SMALL-LOSS	FOCAL	1	GMDS
TCGA.AA.3663	6	1825233	2016678	72	-1.182	SMALL-LOSS	FOCAL	1	GMDS
TCGA.AD.A5EJ	6	1929254	2123881	62	-0.8903	SMALL-LOSS	FOCAL	1	GMDS
TCGA.AA.3518	6	1951580	2016678	21	-0.7219	SMALL-LOSS	FOCAL	1	GMDS
TCGA.AA.3966	6	2033839	2129822	32	-1.2409	SMALL-LOSS	FOCAL	1	GMDS
TCGA.D5.6530	6	2037631	2072577	14	-0.7646	SMALL-LOSS	FOCAL	1	GMDS
TCGA.AM.5821	6	2051868	2097685	15	-0.6592	SMALL-LOSS	FOCAL	1	GMDS
TCGA.D5.6530	6	2097653	2121846	8	-0.837	SMALL-LOSS	FOCAL	1	GMDS
TCGA.DM.A1D9	6	2115991	2162748	14	-1.0042	SMALL-LOSS	FOCAL	1	GMDS
TCGA.AA.3556	6	2197196	2205805	3	-1.054	SMALL-LOSS	FOCAL	1	GMDS
TCGA.A6.6653	6	2197196	2333900	35	-0.7022	SMALL-LOSS	FOCAL	1	GMDS
TCGA.AA.A01K.01A	6	2689033	3225219	57	-0.6434	SMALL-LOSS	FOCAL	10	"BPHL,MYLK4,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,TUBB2A,TUBB2B,WRNIP1"
TCGA.AG.4009.01A	6	2749368	2783610	5	-0.7018	SMALL-LOSS	FOCAL	2	"MYLK4,WRNIP1"
TCGA.AA.A010.01A	6	2749368	3156238	54	-0.8237	SMALL-LOSS	FOCAL	9	"BPHL,MYLK4,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,TUBB2A,WRNIP1"
TCGA.AG.3909.01A	6	2836052	3156238	44	-1.2713	SMALL-LOSS	FOCAL	7	"BPHL,NQO2,RIPK1,SERPINB1,SERPINB6,SERPINB9,TUBB2A"
TCGA.AG.4009.01A	6	2948515	2959355	6	-1.1858	SMALL-LOSS	FOCAL	1	SERPINB6
TCGA.AG.4009.01A	6	3006689	3140572	23	-0.6123	SMALL-LOSS	FOCAL	3	"BPHL,NQO2,RIPK1"
TCGA.AA.3833	6	3280620	3281413	3	-1.2798	SMALL-LOSS	FOCAL	1	SLC22A23
TCGA.AF.3914.01A	6	4068933	4087818	5	-1.0165	SMALL-LOSS	FOCAL	2	"C6orf201,FAM217A"
TCGA.AG.4009.01A	6	4068933	4133746	17	-0.9302	SMALL-LOSS	FOCAL	3	"C6orf201,ECI2,FAM217A"
TCGA.AY.5543	6	4882017	4890470	6	-1.1316	SMALL-LOSS	FOCAL	1	CDYL
TCGA.AG.3909.01A	6	5999160	6006867	3	-0.9659	SMALL-LOSS	FOCAL	1	NRN1
TCGA.AG.4009.01A	6	5999160	6006867	3	-1.0644	SMALL-LOSS	FOCAL	1	NRN1
TCGA.AA.A00N.01A	6	7211014	7356240	21	-1.1921	SMALL-LOSS	FOCAL	3	"CAGE1,RREB1,SSR1"
TCGA.AA.A010.01A	6	7211014	7365981	23	-0.5517	SMALL-LOSS	FOCAL	3	"CAGE1,RREB1,SSR1"
TCGA.AF.3914.01A	6	7226672	7230562	3	-1.3097	SMALL-LOSS	FOCAL	1	RREB1
TCGA.AG.3909.01A	6	7226672	7327012	14	-0.7063	SMALL-LOSS	FOCAL	3	"CAGE1,RREB1,SSR1"
TCGA.AZ.4684.01A	6	7298917	7334228	8	-0.8587	SMALL-LOSS	FOCAL	2	"CAGE1,SSR1"
TCGA.AA.3509.01A	6	7298917	7368884	13	-0.8066	SMALL-LOSS	FOCAL	2	"CAGE1,SSR1"
TCGA.AA.A010.01A	6	7402844	7571565	24	-0.6372	SMALL-LOSS	FOCAL	2	"DSP,RIOK1"
TCGA.AG.3611.01A	6	7555912	7578675	21	-0.5782	SMALL-LOSS	FOCAL	1	DSP
TCGA.AG.4009.01A	6	7891807	7904756	4	-0.8094	SMALL-LOSS	FOCAL	1	TXNDC5
TCGA.AA.3941	6	8343670	10068002	629	-0.7514	SMALL-LOSS	FOCAL	1	SLC35B3
TCGA.EI.6883	6	9729118	9989764	109	-0.6654	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6883	6	9997431	10048850	29	-0.5668	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	6	10398633	10415103	8	-0.9845	SMALL-LOSS	FOCAL	1	TFAP2A
TCGA.AF.3914.01A	6	10400652	10415103	7	-0.7741	SMALL-LOSS	FOCAL	1	TFAP2A
TCGA.AG.3611.01A	6	10400652	10430100	8	-0.564	SMALL-LOSS	FOCAL	1	TFAP2A
TCGA.EI.6883	6	10541212	10555887	10	-0.7199	SMALL-LOSS	FOCAL	1	GCNT2
TCGA.AA.A00N.01A	6	12015803	12129950	8	-1.0437	SMALL-LOSS	FOCAL	1	HIVEP1
TCGA.AA.A01R	6	13262505	13264025	4	-0.644	SMALL-LOSS	FOCAL	1	PHACTR1
TCGA.AA.A00N.01A	6	13306579	13601014	16	-0.7171	SMALL-LOSS	FOCAL	3	"GFOD1,SIRT5,TBC1D7"
TCGA.AG.3909.01A	6	13316786	13622542	23	-0.9428	SMALL-LOSS	FOCAL	5	"GFOD1,NOL7,RANBP9,SIRT5,TBC1D7"
TCGA.CK.5914.01A	6	13321130	13625838	23	-0.5182	SMALL-LOSS	FOCAL	5	"GFOD1,NOL7,RANBP9,SIRT5,TBC1D7"
TCGA.AA.A010.01A	6	13696970	15246697	18	-1.2145	SMALL-LOSS	FOCAL	5	"CD83,JARID2,MCUR1,RANBP9,RNF182"
TCGA.AG.3909.01A	6	13799004	13807110	5	-0.8547	SMALL-LOSS	FOCAL	1	MCUR1
TCGA.AG.3909.01A	6	15496406	15524607	13	-0.9546	SMALL-LOSS	FOCAL	2	"DTNBP1,JARID2"
TCGA.AA.A01Q.01A	6	15504716	15520248	9	-0.7327	SMALL-LOSS	FOCAL	1	JARID2
TCGA.AG.3611.01A	6	15652246	16254741	12	-0.5716	SMALL-LOSS	FOCAL	3	"DTNBP1,GMPR,MYLIP"
TCGA.AA.3982	6	17064763	17080711	7	-0.8389	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	6	17600653	17608398	5	-0.8449	SMALL-LOSS	FOCAL	1	FAM8A1
TCGA.AA.A00N.01A	6	17987229	18171543	16	-1.3218	SMALL-LOSS	FOCAL	4	"KDM1B,KIF13A,NHLRC1,TPMT"
TCGA.AA.A010.01A	6	17987229	18171543	16	-1.3076	SMALL-LOSS	FOCAL	4	"KDM1B,KIF13A,NHLRC1,TPMT"
TCGA.AG.3909.01A	6	18121612	18166456	13	-0.9607	SMALL-LOSS	FOCAL	3	"KDM1B,NHLRC1,TPMT"
TCGA.AG.3909.01A	6	18249830	18264024	6	-0.7363	SMALL-LOSS	FOCAL	1	DEK
TCGA.CK.5914.01A	6	18255940	18258488	4	-0.6469	SMALL-LOSS	FOCAL	1	DEK
TCGA.AA.3844	6	18430586	18451059	12	-0.8811	SMALL-LOSS	FOCAL	1	RNF144B
TCGA.AA.3982	6	18442316	18446093	9	-0.7776	SMALL-LOSS	FOCAL	1	RNF144B
TCGA.AA.3850	6	18622007	19192997	206	-0.53605	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	6	18622007	19602972	355	-0.6951	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	6	18673710	18682997	6	-1.0738	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6533	6	19129677	19169717	10	-0.8455	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	6	19188370	19191663	5	-1.2258	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4682	6	19377193	24353435	1980	-0.7618	SMALL-LOSS	FOCAL	9	"CDKAL1,DCDC2,E2F3,HDGFL1,ID4,MBOAT1,NRSN1,PRL,SOX4"
TCGA.AD.6899	6	22272752	22413782	67	-1.0864	SMALL-LOSS	FOCAL	1	PRL
TCGA.AA.A00L.01A	6	22292726	24278255	14	-0.527	SMALL-LOSS	FOCAL	4	"DCDC2,HDGFL1,NRSN1,PRL"
TCGA.AA.3941	6	22565126	24046036	631	-1.0124	SMALL-LOSS	FOCAL	1	HDGFL1
TCGA.AG.4009.01A	6	22569763	24134505	3	-0.7655	SMALL-LOSS	FOCAL	2	"HDGFL1,NRSN1"
TCGA.AA.3864	6	22743402	22755809	13	-0.9887	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	6	22743402	22755809	13	-0.7688	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	6	22743402	22755809	13	-1.3108	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3973	6	22905316	22905802	3	-1.1394	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6965	6	22905316	22905802	3	-1.0867	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	6	24186589	24256770	19	-0.6215	SMALL-LOSS	FOCAL	1	DCDC2
TCGA.CM.6170	6	24219487	24256770	14	-0.6851	SMALL-LOSS	FOCAL	1	DCDC2
TCGA.AA.A00N.01A	6	24353439	24403237	4	-0.8876	SMALL-LOSS	FOCAL	3	"DCDC2,KAAG1,MRS2"
TCGA.CK.5914.01A	6	24405336	24423123	9	-0.9993	SMALL-LOSS	FOCAL	1	MRS2
TCGA.AG.3909.01A	6	24405336	24423761	10	-1.2275	SMALL-LOSS	FOCAL	1	MRS2
TCGA.AA.A00N.01A	6	24456679	24515348	17	-0.5738	SMALL-LOSS	FOCAL	2	"ALDH5A1,GPLD1"
TCGA.AG.4009.01A	6	24473753	24520612	11	-0.6392	SMALL-LOSS	FOCAL	2	"ALDH5A1,GPLD1"
TCGA.AG.3909.01A	6	24650969	24658737	5	-1.1682	SMALL-LOSS	FOCAL	1	TDP2
TCGA.AG.3909.01A	6	24714495	24785839	9	-0.7166	SMALL-LOSS	FOCAL	2	"C6orf62,GMNN"
TCGA.CM.4746	6	24832712	25981647	474	-0.6081	SMALL-LOSS	FOCAL	10	"FAM65B,HIST1H2AA,HIST1H2BA,LRRC16A,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TRIM38"
TCGA.AA.A01V	6	24951198	24951808	4	-1.1892	SMALL-LOSS	FOCAL	1	FAM65B
TCGA.G4.6626	6	24951198	24951808	4	-0.827	SMALL-LOSS	FOCAL	1	FAM65B
TCGA.AA.A00N.01A	6	25115172	25285033	3	-1.2333	SMALL-LOSS	FOCAL	1	LRRC16A
TCGA.AD.A5EK	6	25351243	25520771	88	-0.8156	SMALL-LOSS	FOCAL	1	LRRC16A
TCGA.AA.A00N.01A	6	25581129	25682110	15	-0.5736	SMALL-LOSS	FOCAL	2	"LRRC16A,SCGN"
TCGA.AA.A00D.01A	6	25769185	25799005	8	-0.8324	SMALL-LOSS	FOCAL	2	"SLC17A1,SLC17A4"
TCGA.AA.3850	6	25782313	25892528	49	-0.88705	SMALL-LOSS	FOCAL	2	"SLC17A1,SLC17A3"
TCGA.AA.3815.01A	6	26017275	26045631	8	-0.5449	SMALL-LOSS	FOCAL	7	"HIST1H1A,HIST1H2AB,HIST1H2BB,HIST1H3A,HIST1H3B,HIST1H4A,HIST1H4B"
TCGA.AA.3667	6	26030491	26031810	3	-1.2197	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	26505115	26545386	5	-1.1051	SMALL-LOSS	FOCAL	2	"BTN1A1,HMGN4"
TCGA.AA.3556	6	26825467	26936064	4	-1.1553	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3611.01A	6	27419053	27439992	7	-0.5636	SMALL-LOSS	FOCAL	1	ZNF184
TCGA.AA.A010.01A	6	27419053	27806388	17	-0.7197	SMALL-LOSS	FOCAL	9	"HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2BL,HIST1H2BM,HIST1H3H,HIST1H4J,HIST1H4K,ZNF184"
TCGA.AG.4009.01A	6	27439992	27806388	11	-0.7589	SMALL-LOSS	FOCAL	9	"HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2BL,HIST1H2BM,HIST1H3H,HIST1H4J,HIST1H4K,ZNF184"
TCGA.AF.3914.01A	6	27775252	27777800	4	-1.1018	SMALL-LOSS	FOCAL	2	"HIST1H2AI,HIST1H2BL"
TCGA.AA.A00N.01A	6	28194831	28268489	18	-0.7525	SMALL-LOSS	FOCAL	5	"NKAPL,PGBD1,ZKSCAN4,ZSCAN26,ZSCAN9"
TCGA.AG.4009.01A	6	28472047	28478557	4	-1.307	SMALL-LOSS	FOCAL	1	GPX6
TCGA.AF.3914.01A	6	28472047	28483381	5	-0.9246	SMALL-LOSS	FOCAL	1	GPX6
TCGA.AA.A010.01A	6	28493737	28501686	5	-0.7531	SMALL-LOSS	FOCAL	1	GPX5
TCGA.AG.3611.01A	6	28493737	28501686	5	-0.6237	SMALL-LOSS	FOCAL	1	GPX5
TCGA.AA.A00N.01A	6	28874938	28971629	15	-1.245	SMALL-LOSS	FOCAL	2	"TRIM27,ZNF311"
TCGA.AG.3909.01A	6	28874938	29012558	15	-0.8133	SMALL-LOSS	FOCAL	3	"OR2W1,TRIM27,ZNF311"
TCGA.AA.3850	6	29023213	29407601	80	-0.68405	SMALL-LOSS	FOCAL	8	"OR11A1,OR12D2,OR12D3,OR14J1,OR2B3,OR2J2,OR2J3,OR5V1"
TCGA.AA.3941	6	29106467	29434413	81	-1.1242	SMALL-LOSS	FOCAL	8	"OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2H1,OR2J2,OR5V1"
TCGA.AA.A01F.01A	6	29571280	29574646	6	-0.5492	SMALL-LOSS	FOCAL	1	GABBR1
TCGA.AG.3909.01A	6	29691789	30080129	35	-1.1438	SMALL-LOSS	FOCAL	8	"HLA-A,HLA-F,HLA-G,LOC554223,PPP1R11,RNF39,TRIM31,ZNRD1"
TCGA.AA.3864	6	29777170	29778028	5	-1.0092	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5349	6	29850273	29898896	8	-1.0511	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3679	6	29871635	29896658	6	-0.663	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01R	6	29871635	29898896	6	-0.7266	SMALL-LOSS	FOCAL	0	None
TCGA.T9.A92H	6	29871635	29898896	7	-0.8286	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	6	30029255	30042948	10	-0.6999	SMALL-LOSS	FOCAL	3	"PPP1R11,RNF39,ZNRD1"
TCGA.AG.3909.01A	6	30229995	30460100	17	-1.1401	SMALL-LOSS	FOCAL	4	"HLA-E,RPP21,TRIM39,TRIM39-RPP21"
TCGA.AA.A00N.01A	6	30229995	30550795	39	-0.9755	SMALL-LOSS	FOCAL	7	"ABCF1,GNL1,HLA-E,PRR3,RPP21,TRIM39,TRIM39-RPP21"
TCGA.AA.A00N.01A	6	30595221	30709942	59	-0.979	SMALL-LOSS	FOCAL	8	"ATAT1,C6orf136,DHX16,FLOT1,MDC1,NRM,PPP1R18,TUBB"
TCGA.AG.3909.01A	6	30652133	30884597	58	-0.852	SMALL-LOSS	FOCAL	9	"DDR1,FLOT1,GTF2H4,IER3,MDC1,NRM,PPP1R18,TUBB,VARS2"
TCGA.AA.A01Q.01A	6	30681363	30688211	3	-1.2559	SMALL-LOSS	FOCAL	2	"MDC1,TUBB"
TCGA.AA.A00N.01A	6	30876782	30889640	22	-0.9868	SMALL-LOSS	FOCAL	2	"GTF2H4,VARS2"
TCGA.AA.A01Q.01A	6	30876782	30899777	30	-0.8127	SMALL-LOSS	FOCAL	3	"GTF2H4,SFTA2,VARS2"
TCGA.AA.A00N.01A	6	30916312	30955725	13	-0.9748	SMALL-LOSS	FOCAL	2	"DPCR1,MUC21"
TCGA.AG.3909.01A	6	30916312	30955725	12	-0.5453	SMALL-LOSS	FOCAL	2	"DPCR1,MUC21"
TCGA.AG.3906.01A	6	31236847	31378323	10	-0.5683	SMALL-LOSS	FOCAL	3	"HLA-B,HLA-C,MICA"
TCGA.AA.3850	6	31256666	31265313	7	-0.98115	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	6	31416919	31420686	9	-0.77295	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	6	31430927	31431599	3	-0.8853	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	31498123	31594497	41	-0.6869	SMALL-LOSS	FOCAL	10	"AIF1,ATP6V1G2,DDX39B,LST1,LTA,LTB,NCR3,NFKBIL1,PRRC2A,TNF"
TCGA.AG.3909.01A	6	31498555	31515399	12	-1.2146	SMALL-LOSS	FOCAL	3	"ATP6V1G2,DDX39B,NFKBIL1"
TCGA.AA.A004.01A	6	31500515	31591998	34	-0.99	SMALL-LOSS	FOCAL	10	"AIF1,ATP6V1G2,DDX39B,LST1,LTA,LTB,NCR3,NFKBIL1,PRRC2A,TNF"
TCGA.AG.A016.01A	6	31513135	31515923	5	-0.6526	SMALL-LOSS	FOCAL	2	"ATP6V1G2,NFKBIL1"
TCGA.AG.3909.01A	6	31583832	31636825	47	-0.7492	SMALL-LOSS	FOCAL	7	"AIF1,APOM,BAG6,C6orf47,CSNK2B,GPANK1,PRRC2A"
TCGA.AA.A00N.01A	6	31616422	31647982	25	-1.0873	SMALL-LOSS	FOCAL	7	"APOM,BAG6,C6orf47,CSNK2B,GPANK1,LY6G5B,LY6G5C"
TCGA.AG.3909.01A	6	31692285	31712239	13	-0.9377	SMALL-LOSS	FOCAL	4	"C6orf25,CLIC1,DDAH2,MSH5"
TCGA.AA.A00N.01A	6	31699943	31715090	11	-1.3144	SMALL-LOSS	FOCAL	2	"CLIC1,MSH5"
TCGA.AG.A01L.01A	6	31703962	31712958	6	-0.5472	SMALL-LOSS	FOCAL	2	"CLIC1,MSH5"
TCGA.AA.A00N.01A	6	31742261	31762658	20	-0.7079	SMALL-LOSS	FOCAL	2	"VARS,VWA7"
TCGA.AG.3909.01A	6	31747786	31807273	24	-1.0667	SMALL-LOSS	FOCAL	6	"C6orf48,HSPA1A,HSPA1B,HSPA1L,LSM2,VARS"
TCGA.AA.A010.01A	6	31750822	31854308	45	-1.0059	SMALL-LOSS	FOCAL	9	"C6orf48,EHMT2,HSPA1A,HSPA1B,HSPA1L,LSM2,NEU1,SLC44A4,VARS"
TCGA.AG.4009.01A	6	31753305	31773784	9	-1.0851	SMALL-LOSS	FOCAL	2	"LSM2,VARS"
TCGA.AG.4009.01A	6	31851552	31856739	6	-0.902	SMALL-LOSS	FOCAL	1	EHMT2
TCGA.AA.A00L.01A	6	31856978	31901911	10	-0.6448	SMALL-LOSS	FOCAL	3	"C2,EHMT2,ZBTB12"
TCGA.AG.A01W.01A	6	31885752	31951748	15	-0.5152	SMALL-LOSS	FOCAL	9	"C2,C4A,C4B,C4B_2,CFB,DXO,NELFE,SKIV2L,STK19"
TCGA.AA.A010.01A	6	31895475	31921785	24	-0.9489	SMALL-LOSS	FOCAL	3	"C2,CFB,NELFE"
TCGA.AA.A00N.01A	6	31901653	31948187	49	-1.0334	SMALL-LOSS	FOCAL	6	"C2,CFB,DXO,NELFE,SKIV2L,STK19"
TCGA.AG.4009.01A	6	31910686	31935734	34	-0.5947	SMALL-LOSS	FOCAL	4	"C2,CFB,NELFE,SKIV2L"
TCGA.AF.3914.01A	6	31933580	31948187	14	-0.9811	SMALL-LOSS	FOCAL	3	"DXO,SKIV2L,STK19"
TCGA.AG.4009.01A	6	31936127	31948187	10	-1.038	SMALL-LOSS	FOCAL	3	"DXO,SKIV2L,STK19"
TCGA.AZ.4684.01A	6	31961970	31965412	4	-1.2499	SMALL-LOSS	FOCAL	3	"C4A,C4B,C4B_2"
TCGA.AA.A00N.01A	6	31961970	32015494	22	-0.6663	SMALL-LOSS	FOCAL	6	"C4A,C4B,C4B_2,CYP21A2,STK19,TNXB"
TCGA.AA.3815.01A	6	31994741	32006218	6	-0.6384	SMALL-LOSS	FOCAL	3	"C4B,C4B_2,CYP21A2"
TCGA.DM.A28M.01A	6	31997312	32010044	8	-0.7392	SMALL-LOSS	FOCAL	4	"C4B,C4B_2,CYP21A2,TNXB"
TCGA.AG.4009.01A	6	32049795	32065543	7	-0.775	SMALL-LOSS	FOCAL	1	TNXB
TCGA.AA.A01C.01A	6	32086516	32096456	9	-1.1073	SMALL-LOSS	FOCAL	1	ATF6B
TCGA.AG.4009.01A	6	32116952	32130302	8	-0.7725	SMALL-LOSS	FOCAL	2	"PPT2,PRRT1"
TCGA.AG.3909.01A	6	32122322	32169856	39	-0.68	SMALL-LOSS	FOCAL	8	"AGER,AGPAT1,EGFL8,GPSM3,NOTCH4,PBX2,PPT2,RNF5"
TCGA.AA.A010.01A	6	32122756	32130302	4	-1.1763	SMALL-LOSS	FOCAL	1	PPT2
TCGA.AG.A01L.01A	6	32147228	32151365	5	-0.6245	SMALL-LOSS	FOCAL	2	"AGER,RNF5"
TCGA.AA.A00Q.01A	6	32159115	32166183	9	-0.8392	SMALL-LOSS	FOCAL	2	"GPSM3,NOTCH4"
TCGA.AA.A01C.01A	6	32168596	32171876	4	-1.1465	SMALL-LOSS	FOCAL	1	NOTCH4
TCGA.AA.A00N.01A	6	32322825	32369447	10	-0.5165	SMALL-LOSS	FOCAL	2	"BTNL2,C6orf10"
TCGA.A6.3810.01A	6	32485433	32486283	3	-0.8821	SMALL-LOSS	FOCAL	1	HLA-DRB5
TCGA.CK.5914.01A	6	32497854	32557370	7	-0.5544	SMALL-LOSS	FOCAL	2	"HLA-DRB1,HLA-DRB5"
TCGA.AG.A008.01A	6	32546777	32709160	16	-0.5994	SMALL-LOSS	FOCAL	3	"HLA-DQA1,HLA-DQB1,HLA-DRB1"
TCGA.AZ.4684.01A	6	32605175	32634229	10	-1.1547	SMALL-LOSS	FOCAL	2	"HLA-DQA1,HLA-DQB1"
TCGA.AG.4009.01A	6	32609039	32634229	8	-0.9261	SMALL-LOSS	FOCAL	2	"HLA-DQA1,HLA-DQB1"
TCGA.AA.3982	6	32751613	32752138	4	-1.1793	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6648	6	32782017	32782386	3	-0.9147	SMALL-LOSS	FOCAL	1	HLA-DOB
TCGA.AA.A00N.01A	6	32808683	32847140	24	-0.9406	SMALL-LOSS	FOCAL	3	"PSMB8,PSMB9,TAP1"
TCGA.AG.3909.01A	6	32940604	32974520	12	-0.6981	SMALL-LOSS	FOCAL	2	"BRD2,HLA-DOA"
TCGA.AA.A00N.01A	6	32942197	32948312	10	-1.2113	SMALL-LOSS	FOCAL	1	BRD2
TCGA.AG.3891.01A	6	32974520	32977181	5	-0.6374	SMALL-LOSS	FOCAL	1	HLA-DOA
TCGA.AG.A00C.01A	6	32974520	32977181	5	-0.56	SMALL-LOSS	FOCAL	1	HLA-DOA
TCGA.AA.3982	6	33005207	33005372	3	-1.2343	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	6	33036376	33043768	5	-1.0199	SMALL-LOSS	FOCAL	2	"HLA-DPA1,HLA-DPB1"
TCGA.AA.A00N.01A	6	33036376	33054224	10	-1.1588	SMALL-LOSS	FOCAL	2	"HLA-DPA1,HLA-DPB1"
TCGA.AG.3909.01A	6	33036376	33135502	17	-0.6517	SMALL-LOSS	FOCAL	3	"COL11A2,HLA-DPA1,HLA-DPB1"
TCGA.AA.A01C.01A	6	33143741	33157069	17	-0.6471	SMALL-LOSS	FOCAL	1	COL11A2
TCGA.AA.A010.01A	6	33143741	33174112	38	-0.8994	SMALL-LOSS	FOCAL	4	"COL11A2,HSD17B8,RXRB,SLC39A7"
TCGA.AG.4009.01A	6	33154327	33174112	20	-0.8031	SMALL-LOSS	FOCAL	4	"COL11A2,HSD17B8,RXRB,SLC39A7"
TCGA.AF.3914.01A	6	33156089	33174112	22	-0.5493	SMALL-LOSS	FOCAL	4	"COL11A2,HSD17B8,RXRB,SLC39A7"
TCGA.AG.A02X.01A	6	33162409	33174112	17	-0.5559	SMALL-LOSS	FOCAL	3	"HSD17B8,RXRB,SLC39A7"
TCGA.AG.A01W.01A	6	33240561	33249183	10	-0.6682	SMALL-LOSS	FOCAL	3	"B3GALT4,RPS18,WDR46"
TCGA.AG.A00H.01A	6	33263778	33541528	53	-0.6826	SMALL-LOSS	FOCAL	10	"BAK1,CUTA,DAXX,KIFC1,PHF1,RGL2,SYNGAP1,TAPBP,ZBTB22,ZBTB9"
TCGA.AA.A010.01A	6	33371046	33373944	4	-1.1105	SMALL-LOSS	FOCAL	1	KIFC1
TCGA.AG.A02X.01A	6	33373944	33424431	31	-0.5476	SMALL-LOSS	FOCAL	5	"CUTA,KIFC1,PHF1,SYNGAP1,ZBTB9"
TCGA.AF.3914.01A	6	33391205	33405447	7	-0.773	SMALL-LOSS	FOCAL	1	SYNGAP1
TCGA.AG.4009.01A	6	33391205	33406504	8	-0.8974	SMALL-LOSS	FOCAL	1	SYNGAP1
TCGA.AA.A010.01A	6	33409309	33424431	9	-1.2606	SMALL-LOSS	FOCAL	2	"SYNGAP1,ZBTB9"
TCGA.AA.A010.01A	6	33589323	33625674	4	-1.2595	SMALL-LOSS	FOCAL	1	ITPR3
TCGA.AA.A01Q.01A	6	33657770	33669059	10	-1.0784	SMALL-LOSS	FOCAL	2	"ITPR3,UQCC2"
TCGA.AG.A01W.01A	6	33716184	33735167	6	-1.179	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	6	33740366	33766830	9	-0.7228	SMALL-LOSS	FOCAL	2	"LEMD2,MLN"
TCGA.AA.A01Q.01A	6	33740366	34008283	18	-1.1098	SMALL-LOSS	FOCAL	3	"GRM4,LEMD2,MLN"
TCGA.AA.A00N.01A	6	33740366	34497991	47	-0.7085	SMALL-LOSS	FOCAL	9	"C6orf1,GRM4,HMGA1,LEMD2,MLN,NUDT3,PACSIN1,RPS10,RPS10-NUDT3"
TCGA.AA.A010.01A	6	33744704	34100726	23	-0.5293	SMALL-LOSS	FOCAL	3	"GRM4,LEMD2,MLN"
TCGA.AA.A01Q.01A	6	34494017	34511758	11	-0.8016	SMALL-LOSS	FOCAL	2	"PACSIN1,SPDEF"
TCGA.AA.A010.01A	6	34725599	34759953	6	-0.8396	SMALL-LOSS	FOCAL	2	"SNRPC,UHRF1BP1"
TCGA.AA.A010.01A	6	34823339	34825860	6	-0.6623	SMALL-LOSS	FOCAL	1	UHRF1BP1
TCGA.AA.A010.01A	6	35195320	35208869	9	-0.791	SMALL-LOSS	FOCAL	1	SCUBE3
TCGA.AA.A02K.01A	6	35259294	35262184	4	-0.5419	SMALL-LOSS	FOCAL	1	ZNF76
TCGA.AG.3909.01A	6	35277436	35288932	8	-0.6819	SMALL-LOSS	FOCAL	1	DEF6
TCGA.AG.A01W.01A	6	35307430	35324295	17	-0.6588	SMALL-LOSS	FOCAL	1	PPARD
TCGA.AA.A01Q.01A	6	35389550	35438305	18	-0.6667	SMALL-LOSS	FOCAL	3	"FANCE,PPARD,RPL10A"
TCGA.AG.4009.01A	6	35423515	35436113	10	-0.6868	SMALL-LOSS	FOCAL	1	FANCE
TCGA.AA.A00N.01A	6	35423515	35477391	31	-0.8052	SMALL-LOSS	FOCAL	4	"FANCE,RPL10A,TEAD3,TULP1"
TCGA.AA.A010.01A	6	35427084	35437106	8	-0.5974	SMALL-LOSS	FOCAL	2	"FANCE,RPL10A"
TCGA.AA.A010.01A	6	35437906	35454200	13	-1.2493	SMALL-LOSS	FOCAL	2	"RPL10A,TEAD3"
TCGA.AA.A00D.01A	6	35476937	35586826	11	-0.641	SMALL-LOSS	FOCAL	2	"FKBP5,TULP1"
TCGA.AA.A010.01A	6	35478586	35480345	4	-0.8836	SMALL-LOSS	FOCAL	1	TULP1
TCGA.AG.3909.01A	6	35704836	35773397	13	-0.6681	SMALL-LOSS	FOCAL	5	"ARMC12,CLPS,CLPSL1,CLPSL2,LHFPL5"
TCGA.AA.A00N.01A	6	35706123	35773397	14	-0.9868	SMALL-LOSS	FOCAL	5	"ARMC12,CLPS,CLPSL1,CLPSL2,LHFPL5"
TCGA.CK.5914.01A	6	35745189	35761212	7	-0.7375	SMALL-LOSS	FOCAL	2	"CLPSL1,CLPSL2"
TCGA.AA.3509.01A	6	35928555	35944941	5	-1.0457	SMALL-LOSS	FOCAL	1	SLC26A8
TCGA.AA.A010.01A	6	36067918	36070319	2	-0.744	SMALL-LOSS	FOCAL	1	MAPK14
TCGA.AG.4009.01A	6	36099006	36189893	16	-0.5631	SMALL-LOSS	FOCAL	2	"BRPF3,MAPK13"
TCGA.AA.A010.01A	6	36179033	36189893	4	-0.6183	SMALL-LOSS	FOCAL	1	BRPF3
TCGA.D5.6538	6	36202560	36242316	15	-0.5372	SMALL-LOSS	FOCAL	1	PNPLA1
TCGA.AG.3909.01A	6	36334391	36368169	9	-0.8667	SMALL-LOSS	FOCAL	2	"ETV7,PXT1"
TCGA.AA.A01Q.01A	6	36569441	36767695	21	-0.574	SMALL-LOSS	FOCAL	4	"CDKN1A,CPNE5,RAB44,SRSF3"
TCGA.AA.A00Q.01A	6	36651827	36733034	13	-0.5598	SMALL-LOSS	FOCAL	3	"CDKN1A,CPNE5,RAB44"
TCGA.AA.A010.01A	6	36789812	36949308	30	-0.537	SMALL-LOSS	FOCAL	5	"C6orf89,CPNE5,MTCH1,PI16,PPIL1"
TCGA.AG.4009.01A	6	36887304	36949308	16	-0.9316	SMALL-LOSS	FOCAL	3	"C6orf89,MTCH1,PI16"
TCGA.AA.A01Q.01A	6	36922486	36988275	26	-0.5747	SMALL-LOSS	FOCAL	3	"FGD2,MTCH1,PI16"
TCGA.AF.3914.01A	6	36926872	36949308	15	-0.548	SMALL-LOSS	FOCAL	2	"MTCH1,PI16"
TCGA.AA.A01F.01A	6	36995158	36995712	2	-0.9636	SMALL-LOSS	FOCAL	1	FGD2
TCGA.AG.4009.01A	6	37138325	37141661	4	-0.8997	SMALL-LOSS	FOCAL	1	PIM1
TCGA.AG.3909.01A	6	37605098	37625983	14	-0.6217	SMALL-LOSS	FOCAL	1	MDGA1
TCGA.AY.5543	6	38130314	38501284	134	-0.6086	SMALL-LOSS	FOCAL	1	BTBD9
TCGA.SS.A7HO	6	38287909	38534607	85	-0.7923	SMALL-LOSS	FOCAL	1	BTBD9
TCGA.AG.3611.01A	6	38979961	39041359	9	-0.5521	SMALL-LOSS	FOCAL	2	"DNAH8,GLP1R"
TCGA.AA.A01Q.01A	6	39158634	39304219	17	-0.739	SMALL-LOSS	FOCAL	4	"KCNK16,KCNK17,KCNK5,KIF6"
TCGA.AA.3982	6	39596069	39606634	3	-1.2796	SMALL-LOSS	FOCAL	1	KIF6
TCGA.A6.6653	6	39860029	39914701	27	-0.6597	SMALL-LOSS	FOCAL	2	"DAAM2,MOCS1"
TCGA.AA.3941	6	39954158	40124442	63	-1.1916	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	6	39973005	40118297	47	-0.5985	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	6	39973005	40125458	53	-0.58405	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00Q.01A	6	40359692	41011627	12	-0.5867	SMALL-LOSS	FOCAL	3	"LRFN2,TSPO2,UNC5CL"
TCGA.EI.6511	6	40365600	40367137	3	-1.0136	SMALL-LOSS	FOCAL	1	LRFN2
TCGA.AA.3982	6	40937731	40941204	3	-0.8631	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	6	41021060	41062084	15	-0.7781	SMALL-LOSS	FOCAL	3	"APOBEC2,NFYA,OARD1"
TCGA.AG.3909.01A	6	41035022	41065033	14	-1.2389	SMALL-LOSS	FOCAL	2	"NFYA,OARD1"
TCGA.CK.5914.01A	6	41035022	41065033	14	-0.679	SMALL-LOSS	FOCAL	2	"NFYA,OARD1"
TCGA.AG.4009.01A	6	41037753	41059245	9	-0.9222	SMALL-LOSS	FOCAL	2	"NFYA,OARD1"
TCGA.AA.3815.01A	6	41046768	41057287	4	-1.0807	SMALL-LOSS	FOCAL	1	NFYA
TCGA.AA.A00D.01A	6	41117934	41309529	26	-0.5471	SMALL-LOSS	FOCAL	6	"NCR2,TREM1,TREM2,TREML1,TREML2,TREML4"
TCGA.AA.A01Q.01A	6	41653780	41705416	7	-1.1934	SMALL-LOSS	FOCAL	2	"PGC,TFEB"
TCGA.AG.4009.01A	6	41703795	41744617	15	-0.6643	SMALL-LOSS	FOCAL	3	"FRS3,PGC,TFEB"
TCGA.AA.A01Q.01A	6	41740536	41751810	5	-0.6995	SMALL-LOSS	FOCAL	2	"FRS3,PRICKLE4"
TCGA.AG.4009.01A	6	41874759	42025075	20	-0.6803	SMALL-LOSS	FOCAL	4	"BYSL,CCND3,MED20,TAF8"
TCGA.AA.A00N.01A	6	42210947	42233415	9	-0.9473	SMALL-LOSS	FOCAL	1	TRERF1
TCGA.CK.5914.01A	6	42214138	42225810	4	-0.7196	SMALL-LOSS	FOCAL	1	TRERF1
TCGA.AA.A00N.01A	6	42633100	42658720	15	-1.1304	SMALL-LOSS	FOCAL	1	UBR2
TCGA.AG.4009.01A	6	42641811	42712730	14	-0.6449	SMALL-LOSS	FOCAL	3	"PRPH2,TBCC,UBR2"
TCGA.AA.A00N.01A	6	42929909	42996783	40	-0.9738	SMALL-LOSS	FOCAL	6	"GNMT,KLHDC3,MEA1,PEX6,PPP2R5D,RRP36"
TCGA.AA.A00O.01A	6	42932486	42933736	3	-1.0159	SMALL-LOSS	FOCAL	1	PEX6
TCGA.AG.A025.01A	6	42941701	42994883	26	-0.9618	SMALL-LOSS	FOCAL	5	"KLHDC3,MEA1,PEX6,PPP2R5D,RRP36"
TCGA.AA.A010.01A	6	42957288	43030624	52	-0.5433	SMALL-LOSS	FOCAL	7	"CUL7,KLC4,KLHDC3,MEA1,MRPL2,PPP2R5D,RRP36"
TCGA.AA.A01Q.01A	6	42985612	43010548	14	-0.8564	SMALL-LOSS	FOCAL	3	"CUL7,KLHDC3,RRP36"
TCGA.AA.A00N.01A	6	43017117	43044175	27	-0.9071	SMALL-LOSS	FOCAL	4	"CUL7,KLC4,MRPL2,PTK7"
TCGA.AG.4009.01A	6	43030624	43042314	13	-0.6214	SMALL-LOSS	FOCAL	1	KLC4
TCGA.AF.3914.01A	6	43033308	43042314	12	-0.9615	SMALL-LOSS	FOCAL	1	KLC4
TCGA.AG.A01W.01A	6	43053959	43137041	46	-0.5388	SMALL-LOSS	FOCAL	1	PTK7
TCGA.AA.A00N.01A	6	43114300	43164332	21	-0.6167	SMALL-LOSS	FOCAL	3	"CUL9,PTK7,SRF"
TCGA.AA.A010.01A	6	43114300	43174071	34	-0.5288	SMALL-LOSS	FOCAL	3	"CUL9,PTK7,SRF"
TCGA.AG.4009.01A	6	43126503	43146783	9	-0.6612	SMALL-LOSS	FOCAL	2	"PTK7,SRF"
TCGA.AG.A01W.01A	6	43138582	43147232	8	-0.9369	SMALL-LOSS	FOCAL	1	SRF
TCGA.AF.3914.01A	6	43141558	43146783	6	-0.9544	SMALL-LOSS	FOCAL	1	SRF
TCGA.AG.3909.01A	6	43141558	43154985	11	-0.7702	SMALL-LOSS	FOCAL	2	"CUL9,SRF"
TCGA.AA.A010.01A	6	43180860	43226767	21	-1.0602	SMALL-LOSS	FOCAL	3	"CUL9,DNPH1,TTBK1"
TCGA.AG.4009.01A	6	43182776	43251218	24	-0.7417	SMALL-LOSS	FOCAL	3	"CUL9,DNPH1,TTBK1"
TCGA.AF.3914.01A	6	43188170	43251218	24	-0.5732	SMALL-LOSS	FOCAL	3	"CUL9,DNPH1,TTBK1"
TCGA.AG.A01W.01A	6	43312839	43338469	17	-0.7848	SMALL-LOSS	FOCAL	1	ZNF318
TCGA.AG.4009.01A	6	43322364	43495824	56	-0.9383	SMALL-LOSS	FOCAL	8	"ABCC10,DLK2,LRRC73,POLR1C,TJAP1,XPO5,YIPF3,ZNF318"
TCGA.AG.3909.01A	6	43411613	43494362	43	-0.6374	SMALL-LOSS	FOCAL	7	"ABCC10,DLK2,LRRC73,POLR1C,TJAP1,XPO5,YIPF3"
TCGA.CK.5914.01A	6	43480472	43501592	26	-0.5309	SMALL-LOSS	FOCAL	3	"POLR1C,XPO5,YIPF3"
TCGA.AA.A00N.01A	6	43480472	43572923	54	-1.2816	SMALL-LOSS	FOCAL	4	"POLH,POLR1C,XPO5,YIPF3"
TCGA.AA.A010.01A	6	43487043	43528604	31	-1.1019	SMALL-LOSS	FOCAL	2	"POLR1C,XPO5"
TCGA.AG.3909.01A	6	43495324	43514261	8	-1.2981	SMALL-LOSS	FOCAL	1	XPO5
TCGA.AG.4009.01A	6	43496527	43604091	46	-0.65	SMALL-LOSS	FOCAL	4	"GTPBP2,MAD2L1BP,POLH,XPO5"
TCGA.AG.3909.01A	6	43515295	43554997	22	-0.6748	SMALL-LOSS	FOCAL	2	"POLH,XPO5"
TCGA.CK.5914.01A	6	43534887	43554997	10	-0.7041	SMALL-LOSS	FOCAL	2	"POLH,XPO5"
TCGA.AA.A010.01A	6	43578259	43589108	3	-0.5626	SMALL-LOSS	FOCAL	2	"GTPBP2,POLH"
TCGA.AA.A00N.01A	6	43578259	43604091	15	-0.5874	SMALL-LOSS	FOCAL	3	"GTPBP2,MAD2L1BP,POLH"
TCGA.AA.A00L.01A	6	43589108	43593922	8	-0.5687	SMALL-LOSS	FOCAL	1	GTPBP2
TCGA.AG.A01W.01A	6	43711525	43720814	4	-1.1715	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	43738471	44126493	35	-0.7244	SMALL-LOSS	FOCAL	4	"C6orf223,MRPL14,TMEM63B,VEGFA"
TCGA.AA.A010.01A	6	43742017	43752199	7	-1.1051	SMALL-LOSS	FOCAL	1	VEGFA
TCGA.AG.4009.01A	6	43742017	43968706	8	-0.7816	SMALL-LOSS	FOCAL	2	"C6orf223,VEGFA"
TCGA.AA.A01Q.01A	6	43745165	43969726	9	-1.1115	SMALL-LOSS	FOCAL	2	"C6orf223,VEGFA"
TCGA.AG.A025.01A	6	43746139	44120302	25	-0.9634	SMALL-LOSS	FOCAL	4	"C6orf223,MRPL14,TMEM63B,VEGFA"
TCGA.AA.A00Q.01A	6	44115949	44122390	10	-0.6941	SMALL-LOSS	FOCAL	1	TMEM63B
TCGA.AA.A01Q.01A	6	44117948	44134434	9	-0.6388	SMALL-LOSS	FOCAL	2	"CAPN11,TMEM63B"
TCGA.AF.3914.01A	6	44151382	44219457	17	-0.6074	SMALL-LOSS	FOCAL	3	"CAPN11,HSP90AB1,SLC29A1"
TCGA.AG.A01W.01A	6	44184670	44223949	16	-0.888	SMALL-LOSS	FOCAL	3	"HSP90AB1,SLC29A1,SLC35B2"
TCGA.AG.3909.01A	6	44194979	44197626	3	-0.7963	SMALL-LOSS	FOCAL	1	SLC29A1
TCGA.AA.A01Q.01A	6	44194979	44198036	4	-0.573	SMALL-LOSS	FOCAL	1	SLC29A1
TCGA.AG.4009.01A	6	44194979	44200503	8	-0.9722	SMALL-LOSS	FOCAL	1	SLC29A1
TCGA.AA.A00N.01A	6	44194979	44201107	9	-1.0552	SMALL-LOSS	FOCAL	1	SLC29A1
TCGA.AA.A010.01A	6	44194979	44201107	9	-1.0082	SMALL-LOSS	FOCAL	1	SLC29A1
TCGA.CK.5914.01A	6	44194979	44226892	22	-0.8094	SMALL-LOSS	FOCAL	4	"HSP90AB1,NFKBIE,SLC29A1,SLC35B2"
TCGA.AA.A01Q.01A	6	44199053	44201107	5	-0.9772	SMALL-LOSS	FOCAL	1	SLC29A1
TCGA.AA.A01Q.01A	6	44220771	44228133	9	-0.7999	SMALL-LOSS	FOCAL	3	"HSP90AB1,NFKBIE,SLC35B2"
TCGA.AA.A00N.01A	6	44222445	44228133	6	-1.1809	SMALL-LOSS	FOCAL	2	"NFKBIE,SLC35B2"
TCGA.AF.3914.01A	6	44227752	44247889	7	-0.9535	SMALL-LOSS	FOCAL	2	"NFKBIE,TMEM151B"
TCGA.AG.3909.01A	6	44227752	44376130	41	-0.561	SMALL-LOSS	FOCAL	6	"AARS2,CDC5L,NFKBIE,SPATS1,TCTE1,TMEM151B"
TCGA.AG.4009.01A	6	44229316	44255259	6	-0.8869	SMALL-LOSS	FOCAL	3	"NFKBIE,TCTE1,TMEM151B"
TCGA.CM.5341	6	44562106	44568764	3	-1.2006	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D9	6	44921319	45176539	51	-0.7131	SMALL-LOSS	FOCAL	1	SUPT3H
TCGA.AA.A00N.01A	6	45332901	45405632	4	-1.034	SMALL-LOSS	FOCAL	2	"RUNX2,SUPT3H"
TCGA.AA.3850	6	45944454	46279133	110	-0.62615	SMALL-LOSS	FOCAL	4	"CLIC5,ENPP4,ENPP5,RCAN2"
TCGA.CM.5341	6	46057308	46487660	116	-1.0963	SMALL-LOSS	FOCAL	3	"ENPP4,ENPP5,RCAN2"
TCGA.AA.A00N.01A	6	46598650	46678240	26	-1.1741	SMALL-LOSS	FOCAL	4	"CYP39A1,PLA2G7,SLC25A27,TDRD6"
TCGA.AG.3909.01A	6	46604076	46668680	18	-0.8165	SMALL-LOSS	FOCAL	3	"CYP39A1,SLC25A27,TDRD6"
TCGA.AA.A010.01A	6	46632460	46636391	2	-1.1571	SMALL-LOSS	FOCAL	1	SLC25A27
TCGA.AG.4009.01A	6	46632460	46679943	17	-0.7407	SMALL-LOSS	FOCAL	3	"PLA2G7,SLC25A27,TDRD6"
TCGA.AA.A00N.01A	6	46679181	46726429	10	-0.5357	SMALL-LOSS	FOCAL	2	"ANKRD66,PLA2G7"
TCGA.AA.A010.01A	6	46679943	46684660	4	-1.2127	SMALL-LOSS	FOCAL	1	PLA2G7
TCGA.CM.5341	6	47682603	47719838	33	-1.0295	SMALL-LOSS	FOCAL	1	ADGRF4
TCGA.AG.3727	6	48492246	49123882	150	-0.8321	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	6	48517513	48601589	23	-0.5676	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	6	49425392	49459810	9	-0.9433	SMALL-LOSS	FOCAL	2	"CENPQ,MUT"
TCGA.AG.3909.01A	6	49437858	49456055	6	-1.0095	SMALL-LOSS	FOCAL	1	CENPQ
TCGA.AA.A00N.01A	6	49518454	49604317	11	-0.651	SMALL-LOSS	FOCAL	2	"C6orf141,RHAG"
TCGA.AA.3941	6	49953046	52002390	599	-1.1702	SMALL-LOSS	FOCAL	5	"DEFB110,DEFB112,PKHD1,TFAP2B,TFAP2D"
TCGA.AA.A00N.01A	6	50681692	50825001	17	-1.1593	SMALL-LOSS	FOCAL	2	"TFAP2B,TFAP2D"
TCGA.AG.3611.01A	6	50786544	50810813	7	-0.7046	SMALL-LOSS	FOCAL	1	TFAP2B
TCGA.CK.5914.01A	6	50786544	50810813	8	-0.9608	SMALL-LOSS	FOCAL	1	TFAP2B
TCGA.AA.A02H.01A	6	50786544	50825001	8	-0.6157	SMALL-LOSS	FOCAL	1	TFAP2B
TCGA.AG.4009.01A	6	50786544	50825001	8	-1.1565	SMALL-LOSS	FOCAL	1	TFAP2B
TCGA.AA.A01C.01A	6	50786544	51483857	9	-0.693	SMALL-LOSS	FOCAL	2	"PKHD1,TFAP2B"
TCGA.AG.3909.01A	6	52142296	52271628	10	-0.703	SMALL-LOSS	FOCAL	2	"MCM3,PAQR8"
TCGA.AA.A010.01A	6	52400512	52550726	6	-0.9957	SMALL-LOSS	FOCAL	2	"TMEM14A,TRAM2"
TCGA.G4.6322	6	52525689	52549321	12	-1.0553	SMALL-LOSS	FOCAL	1	TMEM14A
TCGA.AG.3909.01A	6	52656607	52705469	12	-0.6168	SMALL-LOSS	FOCAL	2	"GSTA1,GSTA5"
TCGA.D5.6898	6	52707289	52715509	3	-0.9413	SMALL-LOSS	FOCAL	1	GSTA5
TCGA.F4.6854	6	52707289	52715509	3	-0.9731	SMALL-LOSS	FOCAL	1	GSTA5
TCGA.AG.3909.01A	6	52935771	52947261	6	-0.6871	SMALL-LOSS	FOCAL	1	FBXO9
TCGA.AA.A010.01A	6	53156537	53160372	3	-1.088	SMALL-LOSS	FOCAL	1	ELOVL5
TCGA.AA.A00Q.01A	6	53409253	53660013	5	-0.742	SMALL-LOSS	FOCAL	3	"GCLC,KLHL31,LRRC1"
TCGA.AG.3909.01A	6	53409253	53660013	5	-0.7334	SMALL-LOSS	FOCAL	3	"GCLC,KLHL31,LRRC1"
TCGA.AG.A01W.01A	6	53869188	53875340	5	-0.614	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3883	6	54056193	54060762	3	-0.9264	SMALL-LOSS	FOCAL	1	MLIP
TCGA.AF.A56K	6	54849160	54857206	3	-0.9081	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A016.01A	6	56323801	57190676	135	-0.9728	SMALL-LOSS	FOCAL	7	"BAG2,BEND6,DST,KIAA1586,PRIM2,RAB23,ZNF451"
TCGA.AA.A010.01A	6	56362645	56374390	7	-0.725	SMALL-LOSS	FOCAL	1	DST
TCGA.AA.A02H.01A	6	56425061	56426870	3	-0.619	SMALL-LOSS	FOCAL	1	DST
TCGA.AA.A010.01A	6	56564410	56846587	11	-1.313	SMALL-LOSS	FOCAL	2	"BEND6,DST"
TCGA.AA.A00N.01A	6	56569026	56989208	24	-0.7276	SMALL-LOSS	FOCAL	4	"BEND6,DST,KIAA1586,ZNF451"
TCGA.AG.4009.01A	6	56707802	56819157	5	-1.1647	SMALL-LOSS	FOCAL	1	DST
TCGA.AG.3909.01A	6	56915546	56965374	6	-0.7482	SMALL-LOSS	FOCAL	2	"KIAA1586,ZNF451"
TCGA.AA.A00N.01A	6	57018612	57190676	17	-0.9633	SMALL-LOSS	FOCAL	4	"BAG2,PRIM2,RAB23,ZNF451"
TCGA.AG.3909.01A	6	57018612	57190676	15	-0.5294	SMALL-LOSS	FOCAL	4	"BAG2,PRIM2,RAB23,ZNF451"
TCGA.CM.5349	6	57160584	57164498	9	-0.9517	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	6	57226181	69560779	2137	-0.6155	SMALL-LOSS	FOCAL	9	"ADGRB3,EYS,KHDRBS2,LGSN,LOC441155,MTRNR2L9,PHF3,PRIM2,PTP4A1"
TCGA.AD.6965	6	58432656	58435427	3	-0.971	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D9	6	58432656	58435427	3	-1.179	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	6	62995712	64356419	12	-0.6807	SMALL-LOSS	FOCAL	4	"KHDRBS2,LGSN,PHF3,PTP4A1"
TCGA.AG.3575	6	64372658	64382623	3	-0.9596	SMALL-LOSS	FOCAL	1	PHF3
TCGA.EI.6508	6	66510925	66528028	10	-0.7229	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3584	6	66912065	68548906	547	-0.612	SMALL-LOSS	FOCAL	0	None
TCGA.AY.6197	6	67009022	67048556	10	-0.9925	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5667	6	67009022	67048628	11	-1.0102	SMALL-LOSS	FOCAL	0	None
TCGA.AY.6196	6	67009022	67048628	11	-1.0565	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.5403	6	67009022	67048628	10	-0.8003	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	6	67153083	68691633	501	-0.92435	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	6	68700631	69564645	268	-0.90065	SMALL-LOSS	FOCAL	1	ADGRB3
TCGA.AA.3655	6	69052096	69154932	29	-0.9837	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	6	69571052	70880797	370	-0.52045	SMALL-LOSS	FOCAL	3	"ADGRB3,COL19A1,LMBRD1"
TCGA.AA.A00N.01A	6	70966431	71137995	21	-0.5396	SMALL-LOSS	FOCAL	2	"COL9A1,FAM135A"
TCGA.AG.3909.01A	6	70976346	70984378	8	-0.5496	SMALL-LOSS	FOCAL	1	COL9A1
TCGA.AG.4009.01A	6	72002953	72891940	11	-0.7143	SMALL-LOSS	FOCAL	2	"OGFRL1,RIMS1"
TCGA.AA.3850	6	72035191	73761876	573	-0.57105	SMALL-LOSS	FOCAL	2	"KCNQ5,RIMS1"
TCGA.AA.3967.01A	6	72113208	73107909	32	-0.9766	SMALL-LOSS	FOCAL	1	RIMS1
TCGA.AA.A00N.01A	6	73879417	73905073	5	-0.9356	SMALL-LOSS	FOCAL	1	KCNQ5
TCGA.AG.3909.01A	6	73879417	73905073	5	-0.5625	SMALL-LOSS	FOCAL	1	KCNQ5
TCGA.AA.3509.01A	6	73951756	74405884	61	-0.5826	SMALL-LOSS	FOCAL	10	"CD109,DDX43,DPPA5,EEF1A1,KHDC1,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.CK.5914.01A	6	73985191	74331489	52	-0.5405	SMALL-LOSS	FOCAL	9	"DDX43,DPPA5,EEF1A1,KHDC1,KHDC3L,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AG.3909.01A	6	74001646	74079279	9	-1.0065	SMALL-LOSS	FOCAL	4	"DPPA5,KHDC1,KHDC3L,OOEP"
TCGA.AA.A017.01A	6	74001646	74201905	38	-0.5914	SMALL-LOSS	FOCAL	7	"DDX43,DPPA5,KHDC1,KHDC3L,MB21D1,MTO1,OOEP"
TCGA.A6.3808.01A	6	74078917	74354091	48	-1.3138	SMALL-LOSS	FOCAL	6	"DDX43,EEF1A1,MB21D1,MTO1,OOEP,SLC17A5"
TCGA.AG.A01N.01A	6	74107353	74407076	45	-0.5333	SMALL-LOSS	FOCAL	6	"CD109,DDX43,EEF1A1,MB21D1,MTO1,SLC17A5"
TCGA.AG.A01W.01A	6	74161302	74258627	29	-0.5706	SMALL-LOSS	FOCAL	3	"EEF1A1,MB21D1,MTO1"
TCGA.AG.3909.01A	6	74227608	74310021	6	-1.0634	SMALL-LOSS	FOCAL	2	"EEF1A1,SLC17A5"
TCGA.AA.A010.01A	6	74304772	74354091	10	-0.8254	SMALL-LOSS	FOCAL	1	SLC17A5
TCGA.AG.4009.01A	6	74304772	74407076	11	-0.7977	SMALL-LOSS	FOCAL	2	"CD109,SLC17A5"
TCGA.AA.A017.01A	6	74304772	74476445	21	-0.5314	SMALL-LOSS	FOCAL	2	"CD109,SLC17A5"
TCGA.AA.A010.01A	6	74512885	74533131	10	-0.5744	SMALL-LOSS	FOCAL	1	CD109
TCGA.AG.3891.01A	6	75796170	75806899	7	-0.6467	SMALL-LOSS	FOCAL	1	COL12A1
TCGA.AG.3909.01A	6	75796170	75806899	7	-0.8489	SMALL-LOSS	FOCAL	1	COL12A1
TCGA.AA.3655	6	76038893	76136267	20	-0.7237	SMALL-LOSS	FOCAL	1	FILIP1
TCGA.AA.3655	6	76230076	76238679	6	-0.7161	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	6	76388248	76423167	7	-1.2935	SMALL-LOSS	FOCAL	1	SENP6
TCGA.AG.3594	6	76517051	78743288	649	-0.5968	SMALL-LOSS	FOCAL	4	"HTR1B,IMPG1,MEI4,MYO6"
TCGA.DC.6155	6	77418086	77441494	6	-0.9401	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3725	6	77439867	77441494	4	-0.7006	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6648	6	77439867	77452269	5	-0.779	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3679	6	77439867	77452269	5	-0.8073	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	6	77439867	77452269	5	-1.21255	SMALL-LOSS	FOCAL	0	None
TCGA.BM.6198	6	77439867	77452269	5	-0.75015	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6512	6	78412427	78422190	3	-0.598	SMALL-LOSS	FOCAL	1	MEI4
TCGA.AA.3679	6	78979397	79026685	7	-0.5843	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	6	78979397	79026685	6	-0.98795	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5860	6	78979397	79026685	7	-1.1553	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6965	6	78987485	79024632	5	-0.8014	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3556	6	79024103	79183692	47	-0.7413	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	80715514	80724148	8	-0.7368	SMALL-LOSS	FOCAL	1	TTK
TCGA.AA.3850	6	81198825	82417139	373	-0.96425	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	6	81301759	82440281	349	-0.6855	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	6	82426476	82737156	116	-0.79105	SMALL-LOSS	FOCAL	1	FAM46A
TCGA.AG.A016.01A	6	82459384	82461266	2	-1.2746	SMALL-LOSS	FOCAL	1	FAM46A
TCGA.CK.5914.01A	6	82949866	83080047	6	-0.8725	SMALL-LOSS	FOCAL	2	"IBTK,TPBG"
TCGA.AA.A00N.01A	6	83881607	83891404	6	-0.7291	SMALL-LOSS	FOCAL	1	PGM3
TCGA.CK.5914.01A	6	83885629	83905287	10	-0.5345	SMALL-LOSS	FOCAL	2	"PGM3,RWDD2A"
TCGA.AG.3909.01A	6	83889477	83905287	8	-0.908	SMALL-LOSS	FOCAL	2	"PGM3,RWDD2A"
TCGA.G4.6303	6	84229622	84230652	3	-1.2721	SMALL-LOSS	FOCAL	1	PRSS35
TCGA.AA.A00N.01A	6	84417469	84603194	7	-0.6871	SMALL-LOSS	FOCAL	3	"CYB5R4,RIPPLY2,SNAP91"
TCGA.AA.A00N.01A	6	84856359	85472211	32	-0.5918	SMALL-LOSS	FOCAL	2	"CEP162,TBX18"
TCGA.CK.5914.01A	6	84894868	84904550	4	-0.735	SMALL-LOSS	FOCAL	1	CEP162
TCGA.AG.3611.01A	6	85446363	86159871	8	-0.6147	SMALL-LOSS	FOCAL	2	"NT5E,TBX18"
TCGA.AA.3867	6	85571635	85614272	12	-0.6421	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28H	6	85995935	87630006	358	-0.5659	SMALL-LOSS	FOCAL	3	"NT5E,SNX14,SYNCRIP"
TCGA.AA.A00N.01A	6	86274994	88187128	51	-0.5422	SMALL-LOSS	FOCAL	10	"C6orf163,C6orf165,CGA,GJB7,HTR1E,SLC35A1,SMIM8,SNX14,SYNCRIP,ZNF292"
TCGA.CK.5914.01A	6	86346658	86351023	3	-1.0177	SMALL-LOSS	FOCAL	1	SYNCRIP
TCGA.CK.5914.01A	6	88119536	88127878	6	-0.8254	SMALL-LOSS	FOCAL	1	C6orf165
TCGA.AG.3909.01A	6	88763591	88775878	6	-1.1383	SMALL-LOSS	FOCAL	1	SPACA1
TCGA.AA.3850	6	89049100	89164037	39	-0.81075	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	6	89638651	89868017	12	-0.5964	SMALL-LOSS	FOCAL	4	"PM20D2,PNRC1,RNGTT,SRSF12"
TCGA.AA.A00N.01A	6	89638651	89871780	16	-1.1227	SMALL-LOSS	FOCAL	4	"PM20D2,PNRC1,RNGTT,SRSF12"
TCGA.AA.A010.01A	6	89638651	89871780	15	-1.223	SMALL-LOSS	FOCAL	4	"PM20D2,PNRC1,RNGTT,SRSF12"
TCGA.CK.5914.01A	6	89638651	89871780	15	-0.5565	SMALL-LOSS	FOCAL	4	"PM20D2,PNRC1,RNGTT,SRSF12"
TCGA.AG.3909.01A	6	89790582	89868017	9	-0.8831	SMALL-LOSS	FOCAL	3	"PM20D2,PNRC1,SRSF12"
TCGA.AA.3556	6	90096682	90200012	28	-0.5384	SMALL-LOSS	FOCAL	2	"ANKRD6,RRAGD"
TCGA.AA.A00D.01A	6	90359693	90382225	17	-0.5741	SMALL-LOSS	FOCAL	1	MDN1
TCGA.AG.A01W.01A	6	90585900	90623487	6	-0.693	SMALL-LOSS	FOCAL	1	GJA10
TCGA.AA.3850	6	90734983	90915600	49	-0.56765	SMALL-LOSS	FOCAL	1	BACH2
TCGA.AG.3883	6	90844120	90860732	8	-0.5724	SMALL-LOSS	FOCAL	1	BACH2
TCGA.AA.3982	6	91213008	96481243	1598	-0.5362	SMALL-LOSS	FOCAL	4	"EPHA7,FUT9,MANEA,MAP3K7"
TCGA.AA.3844	6	91213008	99182143	2286	-0.5529	SMALL-LOSS	FOCAL	10	"EPHA7,FHL5,FUT9,GPR63,KLHL32,MANEA,MAP3K7,MMS22L,NDUFAF4,UFL1"
TCGA.AA.3850	6	91220554	96999219	1744	-0.96465	SMALL-LOSS	FOCAL	5	"EPHA7,FUT9,MANEA,MAP3K7,UFL1"
TCGA.AA.3967.01A	6	91266170	97730139	90	-0.6957	SMALL-LOSS	FOCAL	10	"EPHA7,FHL5,FUT9,GPR63,KLHL32,MANEA,MAP3K7,MMS22L,NDUFAF4,UFL1"
TCGA.AA.A00L.01A	6	93953097	96034309	18	-0.5956	SMALL-LOSS	FOCAL	2	"EPHA7,MANEA"
TCGA.AG.3611.01A	6	93965518	94128932	13	-0.5526	SMALL-LOSS	FOCAL	1	EPHA7
TCGA.AA.A00D.01A	6	93981978	94120184	4	-0.6398	SMALL-LOSS	FOCAL	1	EPHA7
TCGA.CK.5914.01A	6	94120184	96053607	7	-0.7292	SMALL-LOSS	FOCAL	2	"EPHA7,MANEA"
TCGA.AY.A71X	6	94521810	94713503	55	-0.6837	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3893	6	95512238	95560153	15	-0.6109	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6932	6	95841493	97098127	346	-1.1452	SMALL-LOSS	FOCAL	4	"FHL5,FUT9,MANEA,UFL1"
TCGA.AA.A01T	6	96082711	96364731	73	-0.7271	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	6	97112371	97118320	7	-1.2432	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	6	97846570	99131510	285	-0.5946	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3949	6	97875495	97886820	4	-1.3123	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	6	97875495	99195425	297	-0.83055	SMALL-LOSS	FOCAL	0	None
TCGA.EI.7002	6	99696448	100232537	178	-1.2394	SMALL-LOSS	FOCAL	7	"CCNC,COQ3,FAXC,PNISR,PRDM13,TSTD3,USP45"
TCGA.AG.3611.01A	6	100895094	100911123	7	-0.7427	SMALL-LOSS	FOCAL	1	SIM1
TCGA.AA.3844	6	100961197	105166801	1128	-0.5908	SMALL-LOSS	FOCAL	2	"ASCC3,GRIK2"
TCGA.AA.A010.01A	6	101165903	101296007	9	-1.0797	SMALL-LOSS	FOCAL	1	ASCC3
TCGA.AA.3982	6	101406107	105048783	1006	-0.6278	SMALL-LOSS	FOCAL	1	GRIK2
TCGA.AA.3850	6	101406107	105155868	1043	-0.95555	SMALL-LOSS	FOCAL	1	GRIK2
TCGA.DY.A1DF	6	101542663	101799653	72	-0.5752	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6626	6	101599743	101760189	48	-0.7804	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28F	6	101687024	101727948	19	-0.6078	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3893	6	102408631	102417712	8	-0.7669	SMALL-LOSS	FOCAL	1	GRIK2
TCGA.AY.A71X	6	102974127	102985466	6	-0.7802	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	105291036	105405040	6	-0.6985	SMALL-LOSS	FOCAL	2	"HACE1,LIN28B"
TCGA.AA.A010.01A	6	105388003	105548923	6	-0.9622	SMALL-LOSS	FOCAL	2	"BVES,LIN28B"
TCGA.AG.4009.01A	6	105572375	105609342	7	-0.8974	SMALL-LOSS	FOCAL	2	"BVES,POPDC3"
TCGA.AA.A00N.01A	6	105572375	105614372	11	-1.2163	SMALL-LOSS	FOCAL	2	"BVES,POPDC3"
TCGA.AA.A00N.01A	6	105823961	106547163	10	-0.9321	SMALL-LOSS	FOCAL	2	"PRDM1,PREP"
TCGA.AA.A00N.01A	6	106695996	106977999	11	-0.6065	SMALL-LOSS	FOCAL	2	"AIM1,ATG5"
TCGA.AG.A00C.01A	6	108029020	108070846	5	-0.6287	SMALL-LOSS	FOCAL	1	SCML4
TCGA.AA.A00N.01A	6	108232484	108508458	24	-1.1317	SMALL-LOSS	FOCAL	3	"NR2E1,OSTM1,SEC63"
TCGA.AG.4009.01A	6	108233863	108501964	18	-0.5709	SMALL-LOSS	FOCAL	3	"NR2E1,OSTM1,SEC63"
TCGA.AG.A01N.01A	6	109313939	109471304	10	-1.1569	SMALL-LOSS	FOCAL	2	"CEP57L1,SESN1"
TCGA.AA.A00N.01A	6	109315614	109414971	6	-1.1837	SMALL-LOSS	FOCAL	1	SESN1
TCGA.AG.4009.01A	6	109319679	109323413	4	-1.0359	SMALL-LOSS	FOCAL	1	SESN1
TCGA.AF.3914.01A	6	109483919	109816492	44	-0.8074	SMALL-LOSS	FOCAL	8	"AK9,CD164,CEP57L1,LOC100996634,MICAL1,PPIL6,SMPD2,ZBTB24"
TCGA.AA.A00N.01A	6	109689414	109820210	49	-1.1126	SMALL-LOSS	FOCAL	6	"AK9,CD164,MICAL1,PPIL6,SMPD2,ZBTB24"
TCGA.AA.A010.01A	6	109689414	109854402	56	-0.743	SMALL-LOSS	FOCAL	6	"AK9,CD164,MICAL1,PPIL6,SMPD2,ZBTB24"
TCGA.AG.3909.01A	6	109690023	109820210	46	-0.6656	SMALL-LOSS	FOCAL	6	"AK9,CD164,MICAL1,PPIL6,SMPD2,ZBTB24"
TCGA.AG.4009.01A	6	109699041	109752358	7	-0.6061	SMALL-LOSS	FOCAL	2	"CD164,PPIL6"
TCGA.AG.4009.01A	6	109757253	109770542	17	-1.203	SMALL-LOSS	FOCAL	3	"MICAL1,PPIL6,SMPD2"
TCGA.AG.4009.01A	6	109770863	109820210	19	-0.7186	SMALL-LOSS	FOCAL	3	"AK9,MICAL1,ZBTB24"
TCGA.AG.3909.01A	6	110714017	110729499	3	-0.7642	SMALL-LOSS	FOCAL	1	DDO
TCGA.AG.3909.01A	6	110942266	110959789	8	-0.8089	SMALL-LOSS	FOCAL	1	CDK19
TCGA.AA.A00N.01A	6	110948204	111346627	29	-0.7995	SMALL-LOSS	FOCAL	4	"AMD1,CDK19,GTF3C6,RPF2"
TCGA.AA.3509.01A	6	110959789	111585004	37	-0.5665	SMALL-LOSS	FOCAL	6	"AMD1,CDK19,GTF3C6,KIAA1919,RPF2,SLC16A10"
TCGA.A6.3808.01A	6	111210018	111346627	20	-1.2932	SMALL-LOSS	FOCAL	3	"AMD1,GTF3C6,RPF2"
TCGA.AG.4009.01A	6	111320864	111346627	5	-0.6035	SMALL-LOSS	FOCAL	1	RPF2
TCGA.AG.A01W.01A	6	111387009	111395440	4	-0.8077	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	111583468	111588057	4	-1.2681	SMALL-LOSS	FOCAL	1	KIAA1919
TCGA.AG.3909.01A	6	111583468	111588057	4	-0.6612	SMALL-LOSS	FOCAL	1	KIAA1919
TCGA.AA.A00N.01A	6	111726621	111803906	5	-0.6368	SMALL-LOSS	FOCAL	1	REV3L
TCGA.AG.3909.01A	6	112670879	114281032	14	-0.7234	SMALL-LOSS	FOCAL	3	"HDAC2,MARCKS,RFPL4B"
TCGA.AG.A016.01A	6	114181249	116600433	39	-0.9219	SMALL-LOSS	FOCAL	8	"COL10A1,FRK,HDAC2,HS3ST5,MARCKS,NT5DC1,TSPYL1,TSPYL4"
TCGA.AG.4009.01A	6	117198908	117216257	5	-0.8017	SMALL-LOSS	FOCAL	1	RFX6
TCGA.G4.6322	6	117354261	117855966	157	-0.8005	SMALL-LOSS	FOCAL	3	"DCBLD1,ROS1,VGLL2"
TCGA.AG.4009.01A	6	117586871	117609607	4	-0.7223	SMALL-LOSS	FOCAL	2	"ROS1,VGLL2"
TCGA.AG.3909.01A	6	117686176	117708005	7	-0.8377	SMALL-LOSS	FOCAL	1	ROS1
TCGA.AG.3909.01A	6	117708901	117715742	5	-0.5314	SMALL-LOSS	FOCAL	1	ROS1
TCGA.AG.4009.01A	6	117824900	117890698	15	-0.5961	SMALL-LOSS	FOCAL	2	"DCBLD1,GOPC"
TCGA.AG.3909.01A	6	117858267	117923129	16	-0.5637	SMALL-LOSS	FOCAL	2	"DCBLD1,GOPC"
TCGA.AG.3909.01A	6	118953564	119252547	11	-0.6866	SMALL-LOSS	FOCAL	3	"ASF1A,CEP85L,MCM9"
TCGA.AA.A00N.01A	6	118953564	119390164	35	-0.7675	SMALL-LOSS	FOCAL	4	"ASF1A,CEP85L,FAM184A,MCM9"
TCGA.AG.4009.01A	6	119221901	119252547	9	-0.7479	SMALL-LOSS	FOCAL	2	"ASF1A,MCM9"
TCGA.AG.3909.01A	6	119324032	119390164	9	-0.8196	SMALL-LOSS	FOCAL	1	FAM184A
TCGA.DM.A1HB	6	120870537	120875282	5	-0.7691	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	121638609	122749003	14	-0.5278	SMALL-LOSS	FOCAL	3	"GJA1,HSF2,TBC1D32"
TCGA.AA.3867	6	122580444	122581155	4	-1.2146	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3967.01A	6	122737332	124604111	62	-0.655	SMALL-LOSS	FOCAL	8	"CLVS2,FABP7,HSF2,NKAIN2,PKIB,SERINC1,SMPDL3A,TRDN"
TCGA.AA.A00N.01A	6	123100880	123332082	16	-0.9868	SMALL-LOSS	FOCAL	3	"CLVS2,FABP7,SMPDL3A"
TCGA.A6.2686	6	123305898	123327129	6	-0.8315	SMALL-LOSS	FOCAL	1	CLVS2
TCGA.AG.3891.01A	6	123318871	123576928	11	-0.6215	SMALL-LOSS	FOCAL	2	"CLVS2,TRDN"
TCGA.DM.A1HB	6	124636785	124642255	5	-1.1411	SMALL-LOSS	FOCAL	1	NKAIN2
TCGA.AA.A00N.01A	6	125598209	126080225	9	-1.1809	SMALL-LOSS	FOCAL	2	"HDDC2,HEY2"
TCGA.AG.3909.01A	6	125613920	125622939	4	-0.6905	SMALL-LOSS	FOCAL	1	HDDC2
TCGA.CK.5914.01A	6	125613920	126080225	8	-0.6091	SMALL-LOSS	FOCAL	2	"HDDC2,HEY2"
TCGA.AG.3611.01A	6	125621634	126136427	6	-0.598	SMALL-LOSS	FOCAL	3	"HDDC2,HEY2,NCOA7"
TCGA.AA.3518	6	127061317	127397239	77	-0.817	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	127440299	127836647	29	-0.5689	SMALL-LOSS	FOCAL	5	"ECHDC1,KIAA0408,RNF146,RSPO3,SOGA3"
TCGA.AG.4009.01A	6	127794375	127835936	6	-1.0307	SMALL-LOSS	FOCAL	1	SOGA3
TCGA.AG.3909.01A	6	127794375	127836647	7	-0.9364	SMALL-LOSS	FOCAL	1	SOGA3
TCGA.DM.A1HB	6	127954613	128411971	115	-0.6943	SMALL-LOSS	FOCAL	2	"PTPRK,THEMIS"
TCGA.AG.3574	6	128218304	128998863	208	-1.1891	SMALL-LOSS	FOCAL	2	"PTPRK,THEMIS"
TCGA.EI.7002	6	128432429	128795886	89	-1.2816	SMALL-LOSS	FOCAL	1	PTPRK
TCGA.A6.5667	6	129265182	129295173	11	-0.9184	SMALL-LOSS	FOCAL	1	LAMA2
TCGA.AA.A00N.01A	6	129419269	129486684	6	-0.7302	SMALL-LOSS	FOCAL	1	LAMA2
TCGA.AG.3909.01A	6	129419269	129486684	6	-0.6941	SMALL-LOSS	FOCAL	1	LAMA2
TCGA.AG.A01W.01A	6	129962007	129981529	7	-0.644	SMALL-LOSS	FOCAL	1	ARHGAP18
TCGA.AG.4009.01A	6	132270396	132271041	2	-1.0587	SMALL-LOSS	FOCAL	1	CTGF
TCGA.AA.3842	6	132635645	132640316	4	-1.1368	SMALL-LOSS	FOCAL	1	MOXD1
TCGA.AG.3611.01A	6	132796700	132909774	6	-0.5251	SMALL-LOSS	FOCAL	5	"STX7,TAAR5,TAAR6,TAAR8,TAAR9"
TCGA.CK.5914.01A	6	134491366	134495600	9	-0.8356	SMALL-LOSS	FOCAL	1	SGK1
TCGA.AG.3909.01A	6	134491366	134498752	10	-1.2523	SMALL-LOSS	FOCAL	1	SGK1
TCGA.CK.5914.01A	6	135507024	135513411	5	-0.7069	SMALL-LOSS	FOCAL	1	MYB
TCGA.AG.4009.01A	6	135507024	135515442	7	-0.702	SMALL-LOSS	FOCAL	1	MYB
TCGA.AA.3941	6	135829795	136054949	49	-0.9542	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6883	6	135997777	136313787	120	-0.6034	SMALL-LOSS	FOCAL	1	PDE7B
TCGA.AA.3941	6	136064502	136508915	172	-0.9056	SMALL-LOSS	FOCAL	1	PDE7B
TCGA.F4.6854	6	136295251	136713748	114	-0.6053	SMALL-LOSS	FOCAL	4	"BCLAF1,MAP7,MTFR2,PDE7B"
TCGA.AA.A00N.01A	6	136589261	136681783	13	-1.1737	SMALL-LOSS	FOCAL	2	"BCLAF1,MAP7"
TCGA.AA.A010.01A	6	137112837	137234543	12	-0.7879	SMALL-LOSS	FOCAL	2	"MAP3K5,PEX7"
TCGA.AG.4009.01A	6	137112837	137244986	12	-0.5343	SMALL-LOSS	FOCAL	3	"MAP3K5,PEX7,SLC35D3"
TCGA.EI.7002	6	137403526	137423778	6	-1.0692	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	6	137527226	138201187	13	-1.129	SMALL-LOSS	FOCAL	3	"IFNGR1,OLIG3,TNFAIP3"
TCGA.AG.3909.01A	6	137814498	138202139	10	-0.8739	SMALL-LOSS	FOCAL	2	"OLIG3,TNFAIP3"
TCGA.AG.4009.01A	6	137814498	138491763	14	-0.6363	SMALL-LOSS	FOCAL	4	"ARFGEF3,OLIG3,PERP,TNFAIP3"
TCGA.CK.5914.01A	6	138192338	138201187	8	-0.6888	SMALL-LOSS	FOCAL	1	TNFAIP3
TCGA.AA.3815.01A	6	138200391	138483175	7	-0.6082	SMALL-LOSS	FOCAL	3	"ARFGEF3,PERP,TNFAIP3"
TCGA.AA.A010.01A	6	138201187	138491763	7	-0.5174	SMALL-LOSS	FOCAL	3	"ARFGEF3,PERP,TNFAIP3"
TCGA.AG.3909.01A	6	138601114	138629846	10	-0.6204	SMALL-LOSS	FOCAL	1	ARFGEF3
TCGA.AA.A00N.01A	6	139100920	139135618	6	-1.0469	SMALL-LOSS	FOCAL	2	"CCDC28A,ECT2L"
TCGA.AA.3509.01A	6	139109478	139236958	28	-0.5214	SMALL-LOSS	FOCAL	3	"CCDC28A,ECT2L,REPS1"
TCGA.AA.3941	6	140030501	141305861	221	-0.9159	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	6	140084136	142541258	474	-0.5727	SMALL-LOSS	FOCAL	2	"NMBR,VTA1"
TCGA.AA.3844	6	140120376	142545279	469	-0.59	SMALL-LOSS	FOCAL	2	"NMBR,VTA1"
TCGA.AA.3850	6	140373745	142452791	365	-0.72445	SMALL-LOSS	FOCAL	1	NMBR
TCGA.AG.3890	6	140557977	141936644	232	-0.6152	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	6	141331958	142452791	233	-1.2199	SMALL-LOSS	FOCAL	1	NMBR
TCGA.AA.A010.01A	6	143806240	143828326	8	-0.6204	SMALL-LOSS	FOCAL	2	"FUCA2,PEX3"
TCGA.AG.3909.01A	6	143823037	143828326	4	-0.7549	SMALL-LOSS	FOCAL	1	FUCA2
TCGA.G4.6311	6	143869866	143872596	5	-0.8646	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3680	6	144664730	144968194	77	-0.9086	SMALL-LOSS	FOCAL	1	UTRN
TCGA.AA.A02K.01A	6	144724229	144806495	26	-0.6953	SMALL-LOSS	FOCAL	1	UTRN
TCGA.AG.4009.01A	6	144742969	144772458	15	-0.8302	SMALL-LOSS	FOCAL	1	UTRN
TCGA.AA.A017.01A	6	144749865	144759834	5	-0.5816	SMALL-LOSS	FOCAL	1	UTRN
TCGA.AG.3909.01A	6	144749865	144782311	14	-1.1288	SMALL-LOSS	FOCAL	1	UTRN
TCGA.AA.3556	6	145019737	145480655	181	-0.793	SMALL-LOSS	FOCAL	1	UTRN
TCGA.AA.3941	6	145684936	147474762	457	-1.0112	SMALL-LOSS	FOCAL	6	"ADGB,EPM2A,FBXO30,GRM1,RAB32,SHPRH"
TCGA.AG.3909.01A	6	146121245	146126179	3	-0.5164	SMALL-LOSS	FOCAL	1	FBXO30
TCGA.AG.4009.01A	6	146121245	146126179	3	-0.8322	SMALL-LOSS	FOCAL	1	FBXO30
TCGA.AA.A00N.01A	6	146747624	146920117	6	-0.6174	SMALL-LOSS	FOCAL	2	"GRM1,RAB32"
TCGA.AG.4009.01A	6	146864960	147527055	5	-0.8781	SMALL-LOSS	FOCAL	3	"ADGB,RAB32,STXBP5"
TCGA.AA.A00N.01A	6	147109483	147527055	7	-0.8691	SMALL-LOSS	FOCAL	2	"ADGB,STXBP5"
TCGA.F4.6854	6	147324937	149005282	636	-0.516	SMALL-LOSS	FOCAL	3	"SAMD5,SASH1,STXBP5"
TCGA.AF.5654	6	147847522	148236384	162	-0.6196	SMALL-LOSS	FOCAL	1	SAMD5
TCGA.A6.6780	6	147851290	147992672	73	-0.5806	SMALL-LOSS	FOCAL	1	SAMD5
TCGA.AA.3811	6	148290944	148295037	8	-0.8434	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	6	148290944	148295162	9	-1.0122	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	6	148291001	148295162	8	-0.6726	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	6	149355300	149830857	171	-0.7544	SMALL-LOSS	FOCAL	5	"PPIL4,SUMO4,TAB2,UST,ZC3H12D"
TCGA.AA.3509.01A	6	149842159	150117505	49	-0.5779	SMALL-LOSS	FOCAL	6	"GINM1,KATNA1,LATS1,NUP43,PCMT1,PPIL4"
TCGA.AG.3909.01A	6	150022974	150123339	16	-0.6736	SMALL-LOSS	FOCAL	3	"LATS1,NUP43,PCMT1"
TCGA.AA.A010.01A	6	150092260	150211928	18	-0.6674	SMALL-LOSS	FOCAL	3	"LRP11,PCMT1,RAET1E"
TCGA.AA.A01Q.01A	6	150239258	150387003	18	-0.5563	SMALL-LOSS	FOCAL	5	"RAET1G,RAET1L,ULBP1,ULBP2,ULBP3"
TCGA.AG.3909.01A	6	150239258	150387003	19	-0.6981	SMALL-LOSS	FOCAL	5	"RAET1G,RAET1L,ULBP1,ULBP2,ULBP3"
TCGA.AY.A71X	6	150407606	150875070	246	-0.8981	SMALL-LOSS	FOCAL	2	"IYD,PPP1R14C"
TCGA.G4.6322	6	150982872	151850483	328	-0.6065	SMALL-LOSS	FOCAL	7	"AKAP12,ARMT1,CCDC170,MTHFD1L,PLEKHG1,RMND1,ZBTB2"
TCGA.AA.A00N.01A	6	151160917	151208929	6	-0.8076	SMALL-LOSS	FOCAL	2	"MTHFD1L,PLEKHG1"
TCGA.AA.A010.01A	6	151160917	151208929	6	-1.1839	SMALL-LOSS	FOCAL	2	"MTHFD1L,PLEKHG1"
TCGA.AA.A00N.01A	6	151669809	151789461	20	-0.9572	SMALL-LOSS	FOCAL	4	"AKAP12,ARMT1,RMND1,ZBTB2"
TCGA.AA.A010.01A	6	151669809	151859163	22	-0.7554	SMALL-LOSS	FOCAL	5	"AKAP12,ARMT1,CCDC170,RMND1,ZBTB2"
TCGA.AG.4009.01A	6	151757534	151789461	7	-0.912	SMALL-LOSS	FOCAL	2	"ARMT1,RMND1"
TCGA.AG.3891.01A	6	152589153	152622956	9	-0.6037	SMALL-LOSS	FOCAL	1	SYNE1
TCGA.AA.3941	6	152867150	154338955	563	-0.7101	SMALL-LOSS	FOCAL	7	"FBXO5,MTRF1L,MYCT1,OPRM1,RGS17,SYNE1,VIP"
TCGA.CK.5914.01A	6	153292256	153332677	12	-0.8516	SMALL-LOSS	FOCAL	3	"FBXO5,MTRF1L,RGS17"
TCGA.G4.6317	6	153559660	153560574	4	-0.9301	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3594	6	154502259	157482221	1078	-0.5866	SMALL-LOSS	FOCAL	9	"ARID1B,CLDN20,CNKSR3,IPCEF1,NOX3,OPRM1,SCAF8,TFB1M,TIAM2"
TCGA.AA.A00N.01A	6	154567698	154586966	3	-0.9127	SMALL-LOSS	FOCAL	2	"IPCEF1,OPRM1"
TCGA.EI.7002	6	154953098	155194879	42	-1.1566	SMALL-LOSS	FOCAL	1	SCAF8
TCGA.AG.3909.01A	6	155565101	155581356	13	-0.6457	SMALL-LOSS	FOCAL	2	"TFB1M,TIAM2"
TCGA.AA.3941	6	155621018	156549167	399	-0.5861	SMALL-LOSS	FOCAL	2	"NOX3,TFB1M"
TCGA.AG.3898	6	156139554	156140847	4	-1.0326	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3692	6	156419886	157918475	458	-1.2407	SMALL-LOSS	FOCAL	3	"ARID1B,TMEM242,ZDHHC14"
TCGA.A6.6653	6	156485439	156520532	24	-0.6599	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5915	6	157258941	157490115	78	-0.7636	SMALL-LOSS	FOCAL	1	ARID1B
TCGA.AG.A01W.01A	6	157659756	157664380	3	-1.0475	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	6	158049371	158093709	6	-0.5558	SMALL-LOSS	FOCAL	1	ZDHHC14
TCGA.AA.3982	6	158304082	158307759	3	-0.6909	SMALL-LOSS	FOCAL	1	SNX9
TCGA.AG.3909.01A	6	158464299	158504995	15	-0.5159	SMALL-LOSS	FOCAL	1	SYNJ2
TCGA.AG.3909.01A	6	158579264	158735037	4	-0.5388	SMALL-LOSS	FOCAL	3	"GTF2H5,SERAC1,TULP4"
TCGA.AG.3909.01A	6	158910568	158923681	6	-0.9287	SMALL-LOSS	FOCAL	1	TULP4
TCGA.AA.A00N.01A	6	158910568	159134794	33	-1.1277	SMALL-LOSS	FOCAL	4	"DYNLT1,SYTL3,TMEM181,TULP4"
TCGA.AA.A00N.01A	6	159642589	159670024	12	-1.1313	SMALL-LOSS	FOCAL	1	FNDC1
TCGA.AG.3909.01A	6	159644509	159659568	8	-0.8487	SMALL-LOSS	FOCAL	1	FNDC1
TCGA.AG.4009.01A	6	159646526	159659568	7	-1.1586	SMALL-LOSS	FOCAL	1	FNDC1
TCGA.AA.A00N.01A	6	160103478	160114123	5	-1.0786	SMALL-LOSS	FOCAL	1	SOD2
TCGA.AG.4009.01A	6	160103478	160189492	14	-1.2647	SMALL-LOSS	FOCAL	3	"ACAT2,SOD2,WTAP"
TCGA.AG.3909.01A	6	160103478	160212015	32	-1.1385	SMALL-LOSS	FOCAL	5	"ACAT2,MRPL18,SOD2,TCP1,WTAP"
TCGA.AF.3914.01A	6	160105839	160198286	16	-0.9558	SMALL-LOSS	FOCAL	3	"ACAT2,SOD2,WTAP"
TCGA.CK.5914.01A	6	160183934	160238082	37	-0.842	SMALL-LOSS	FOCAL	4	"ACAT2,MRPL18,PNLDC1,TCP1"
TCGA.AG.4009.01A	6	160196185	160200030	6	-0.5947	SMALL-LOSS	FOCAL	2	"ACAT2,TCP1"
TCGA.AA.A01Q.01A	6	160218282	160238082	15	-0.6618	SMALL-LOSS	FOCAL	2	"MRPL18,PNLDC1"
TCGA.AG.3909.01A	6	160239570	160431686	8	-0.7147	SMALL-LOSS	FOCAL	3	"IGF2R,MAS1,PNLDC1"
TCGA.AA.A00N.01A	6	160239570	160445552	9	-0.6249	SMALL-LOSS	FOCAL	3	"IGF2R,MAS1,PNLDC1"
TCGA.AG.3611.01A	6	160412169	160450540	6	-0.622	SMALL-LOSS	FOCAL	1	IGF2R
TCGA.AG.A01W.01A	6	160947462	161043264	5	-0.7624	SMALL-LOSS	FOCAL	1	LPA
TCGA.AA.3664	6	161444435	163524602	855	-0.8561	SMALL-LOSS	FOCAL	4	"AGPAT4,MAP3K4,PACRG,PARK2"
TCGA.AA.A00N.01A	6	161557530	161587118	9	-0.9644	SMALL-LOSS	FOCAL	1	AGPAT4
TCGA.DM.A1HA	6	161917393	162396517	259	-0.9324	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.5656	6	161935590	162014433	57	-0.8249	SMALL-LOSS	FOCAL	1	PARK2
TCGA.F5.6863	6	162001435	162791312	367	-0.6762	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AY.A8YK	6	162084608	162617011	251	-1.0705	SMALL-LOSS	FOCAL	1	PARK2
TCGA.EI.6508	6	162139122	162147726	4	-0.8257	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3858	6	162209897	162264030	28	-0.9626	SMALL-LOSS	FOCAL	1	PARK2
TCGA.G4.6626	6	162264030	162288717	20	-0.8008	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AZ.6607	6	162274041	163483730	435	-1.167	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.DC.6682	6	162281532	162296940	11	-0.9579	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3693	6	162306297	162827463	215	-0.9265	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3688	6	162306978	162447489	50	-1.0041	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.6650	6	162314553	162511253	67	-0.8576	SMALL-LOSS	FOCAL	1	PARK2
TCGA.CA.6715	6	162321376	162396517	26	-0.8997	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DM.A1D0	6	162335466	162346281	9	-0.8919	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DM.A1DB	6	162335466	162489687	67	-0.7435	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DC.6682	6	162339285	162375277	13	-0.8591	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AZ.4308	6	162344711	162507689	64	-0.5434	SMALL-LOSS	FOCAL	1	PARK2
TCGA.G4.6626	6	162359334	162623892	114	-0.8868	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3971	6	162375277	162777740	165	-0.5214	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AD.6548	6	162388706	162982288	256	-1.1615	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.3810.01A	6	162394296	162864305	5	-0.6163	SMALL-LOSS	FOCAL	1	PARK2
TCGA.CM.5862	6	162418446	162595656	79	-0.9176	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AG.3592	6	162428288	162726826	121	-0.5216	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DC.6682	6	162428288	162752049	140	-0.7269	SMALL-LOSS	FOCAL	1	PARK2
TCGA.T9.A92H	6	162429999	162612118	87	-0.86	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3529	6	162437696	162635044	93	-0.6231	SMALL-LOSS	FOCAL	1	PARK2
TCGA.F4.6459	6	162438634	162861830	184	-0.6048	SMALL-LOSS	FOCAL	1	PARK2
TCGA.CA.6715	6	162445940	162496787	31	-0.8208	SMALL-LOSS	FOCAL	1	PARK2
TCGA.EI.6883	6	162466058	162496787	14	-0.6695	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3982	6	162467853	162917676	190	-0.6006	SMALL-LOSS	FOCAL	1	PARK2
TCGA.NH.A6GB	6	162470895	162712346	94	-0.8096	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AH.6549.01A	6	162475063	163148596	5	-0.6486	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.D5.6533	6	162481459	162651796	72	-0.7626	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DC.6155	6	162483613	162612118	57	-1.0029	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AY.6197	6	162507689	162901209	162	-0.8883	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3688	6	162510973	162564053	23	-0.7522	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AD.6963	6	162511253	162573420	24	-0.5424	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.4105	6	162530135	162951293	182	-0.5242	SMALL-LOSS	FOCAL	1	PARK2
TCGA.G4.6294	6	162533731	162632170	43	-0.8721	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DC.4745	6	162545871	162917676	160	-0.8445	SMALL-LOSS	FOCAL	1	PARK2
TCGA.D5.6932	6	162546217	162573341	8	-1.0783	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AY.A69D	6	162546217	162664363	53	-0.8119	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.3807	6	162546217	162757004	88	-0.962	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3511	6	162552208	162883483	145	-0.5745	SMALL-LOSS	FOCAL	1	PARK2
TCGA.EI.6883	6	162569200	162664363	46	-0.7478	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.5656	6	162578520	162690884	50	-0.7132	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AZ.6598	6	162582611	162612002	16	-0.5411	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.6650	6	162595656	162876204	107	-0.7473	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.6782	6	162603317	163220428	225	-0.7141	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.AG.3728	6	162605265	162779000	69	-0.7141	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AZ.4308	6	162605265	162940237	144	-0.6292	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AZ.6603	6	162612002	162660065	17	-1.1855	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DY.A1DG	6	162612002	162785077	64	-1.1316	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AH.6643	6	162619985	162633117	5	-1.024	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.A00L.01A	6	162622111	162864305	3	-1.2812	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3688	6	162632170	162943060	133	-0.9333	SMALL-LOSS	FOCAL	1	PARK2
TCGA.F4.6460	6	162635044	162850908	89	-0.6701	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DM.A1DB	6	162664363	162864838	85	-0.8115	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DM.A28H	6	162672884	163123750	182	-0.6801	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AZ.6598	6	162702831	162785077	33	-0.8253	SMALL-LOSS	FOCAL	1	PARK2
TCGA.5M.AATE	6	162702831	162851540	67	-0.7084	SMALL-LOSS	FOCAL	1	PARK2
TCGA.G4.6626	6	162709947	162746358	20	-0.6956	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3818	6	162729380	162842476	59	-0.9337	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AG.3592	6	162733427	162791312	32	-0.6367	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DC.6682	6	162752692	162998048	111	-1.2479	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.A01T	6	162770008	162864838	48	-1.2517	SMALL-LOSS	FOCAL	1	PARK2
TCGA.F5.6864	6	162785077	162895751	55	-0.5857	SMALL-LOSS	FOCAL	1	PARK2
TCGA.G4.6294	6	162785077	162964681	91	-0.8517	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AU.3779	6	162791312	163025360	104	-0.987	SMALL-LOSS	FOCAL	1	PARK2
TCGA.A6.6652	6	162813663	162848928	12	-0.683	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3971	6	162825101	162943060	54	-0.5785	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DM.A1HA	6	162848928	162922135	40	-0.8745	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3685	6	162861830	162922135	34	-0.7801	SMALL-LOSS	FOCAL	1	PARK2
TCGA.EI.6883	6	162861830	163690428	307	-0.7319	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.F4.6459	6	162862191	163025360	72	-1.1085	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AY.5543	6	162875546	163034793	69	-0.6191	SMALL-LOSS	FOCAL	1	PARK2
TCGA.EI.6508	6	162883483	162922135	19	-0.6518	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3693	6	162895751	163059426	77	-0.7833	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AG.3893	6	162906761	163201284	92	-0.6773	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.AA.A01T	6	162908588	163059301	70	-0.8943	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AA.3511	6	162933252	163233260	89	-0.5369	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.AG.3592	6	162951293	163059426	53	-1.0544	SMALL-LOSS	FOCAL	1	PARK2
TCGA.DY.A1DG	6	162953854	163078774	52	-0.5789	SMALL-LOSS	FOCAL	1	PARK2
TCGA.AG.3742	6	162971547	163277413	77	-0.724	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.5M.AAT4	6	162981380	163539339	158	-0.6335	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.AA.3968	6	162982288	163162059	50	-0.7035	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.DC.6682	6	163007393	163162059	42	-0.7577	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.SS.A7HO	6	163007393	163259259	62	-0.9064	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.AY.A8YK	6	163012610	163214109	48	-0.9642	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.T9.A92H	6	163015357	163201378	46	-0.6944	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.F4.6459	6	163027109	163171969	36	-0.6336	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.AD.A5EK	6	163092866	163171969	12	-1.0729	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.DC.4745	6	163117931	163162059	9	-0.9561	SMALL-LOSS	FOCAL	2	"PACRG,PARK2"
TCGA.DM.A1D0	6	163186801	163487871	78	-0.8408	SMALL-LOSS	FOCAL	1	PACRG
TCGA.DM.A1D6	6	163439122	163487871	16	-0.9556	SMALL-LOSS	FOCAL	1	PACRG
TCGA.DM.A1HA	6	163511973	163741336	159	-1.0322	SMALL-LOSS	FOCAL	1	PACRG
TCGA.AA.3850	6	163948563	163965173	5	-1.19725	SMALL-LOSS	FOCAL	1	QKI
TCGA.AA.3850	6	164271381	164279715	4	-0.64505	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6170	6	165224234	165226633	3	-0.7773	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6854	6	165662788	166564795	411	-0.5879	SMALL-LOSS	FOCAL	2	"C6orf118,PDE10A"
TCGA.A6.3808.01A	6	166075371	166733623	10	-0.735	SMALL-LOSS	FOCAL	4	"PDE10A,PRR18,SFT2D1,T"
TCGA.AA.A00N.01A	6	166574284	166783607	19	-1.1663	SMALL-LOSS	FOCAL	4	"MPC1,PRR18,SFT2D1,T"
TCGA.AG.3909.01A	6	166574284	167426929	55	-0.5791	SMALL-LOSS	FOCAL	7	"FGFR1OP,MPC1,PRR18,RNASET2,RPS6KA2,SFT2D1,T"
TCGA.AG.3896	6	167031290	167032207	3	-1.1263	SMALL-LOSS	FOCAL	1	RPS6KA2
TCGA.AG.3909.01A	6	167704933	167753542	10	-0.6668	SMALL-LOSS	FOCAL	2	"TTLL2,UNC93A"
TCGA.AA.A00N.01A	6	167704933	167772753	12	-0.5681	SMALL-LOSS	FOCAL	2	"TTLL2,UNC93A"
TCGA.AA.3967.01A	6	168289878	168348512	20	-0.7862	SMALL-LOSS	FOCAL	1	MLLT4
TCGA.AG.3891.01A	6	168291491	168363084	23	-0.5262	SMALL-LOSS	FOCAL	1	MLLT4
TCGA.AA.A00N.01A	6	168347336	170047789	80	-0.6745	SMALL-LOSS	FOCAL	8	"DACT2,FRMD1,HGC6.3,KIF25,MLLT4,SMOC2,THBS2,WDR27"
TCGA.AG.3909.01A	6	168369735	170051967	64	-0.6022	SMALL-LOSS	FOCAL	8	"DACT2,FRMD1,HGC6.3,KIF25,MLLT4,SMOC2,THBS2,WDR27"
TCGA.CI.6624	6	168389900	168396970	10	-0.6338	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	6	168430220	168440722	5	-0.7592	SMALL-LOSS	FOCAL	1	KIF25
TCGA.AA.3982	6	168541896	168542541	3	-0.827	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	6	169064671	169641817	18	-0.8179	SMALL-LOSS	FOCAL	2	"SMOC2,THBS2"
TCGA.AG.3891.01A	6	169067008	169641817	18	-0.8066	SMALL-LOSS	FOCAL	2	"SMOC2,THBS2"
TCGA.AG.3611.01A	6	169617824	169640495	16	-0.7639	SMALL-LOSS	FOCAL	1	THBS2
TCGA.AA.3967.01A	6	169620256	170102584	44	-0.6879	SMALL-LOSS	FOCAL	3	"C6orf120,THBS2,WDR27"
TCGA.A6.3808.01A	6	169621473	170140234	53	-0.9546	SMALL-LOSS	FOCAL	5	"C6orf120,PHF10,TCTE3,THBS2,WDR27"
TCGA.AA.A00F.01A	6	169622323	169626224	4	-0.7886	SMALL-LOSS	FOCAL	1	THBS2
TCGA.AA.3930.01A	6	169629620	169640495	8	-0.8203	SMALL-LOSS	FOCAL	1	THBS2
TCGA.F4.6854	6	169822951	170918030	340	-0.5819	SMALL-LOSS	FOCAL	10	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,WDR27"
TCGA.F5.6813	6	169981809	170006974	17	-1.308	SMALL-LOSS	FOCAL	1	WDR27
TCGA.F5.6813	6	170011912	170918030	261	-0.5581	SMALL-LOSS	FOCAL	10	"C6orf120,DLL1,ERMARD,FAM120B,PDCD2,PHF10,PSMB1,TBP,TCTE3,WDR27"
TCGA.CK.5914.01A	6	170034474	170597746	56	-0.7622	SMALL-LOSS	FOCAL	6	"C6orf120,DLL1,ERMARD,PHF10,TCTE3,WDR27"
TCGA.AG.3906.01A	6	170036416	170047789	4	-1.0832	SMALL-LOSS	FOCAL	1	WDR27
TCGA.AA.A010.01A	6	170043741	170102584	17	-0.5739	SMALL-LOSS	FOCAL	2	"C6orf120,WDR27"
TCGA.AG.4009.01A	6	170058317	170144122	23	-0.849	SMALL-LOSS	FOCAL	4	"C6orf120,PHF10,TCTE3,WDR27"
TCGA.AG.3909.01A	6	170058317	170162478	33	-1.2376	SMALL-LOSS	FOCAL	5	"C6orf120,ERMARD,PHF10,TCTE3,WDR27"
TCGA.AA.A010.01A	6	170151404	170169639	13	-0.5695	SMALL-LOSS	FOCAL	2	"ERMARD,TCTE3"
TCGA.AA.A00N.01A	6	170173360	170893340	40	-0.7207	SMALL-LOSS	FOCAL	6	"DLL1,ERMARD,FAM120B,PDCD2,PSMB1,TBP"
TCGA.AA.A01Q.01A	6	170179231	170597746	7	-0.8791	SMALL-LOSS	FOCAL	2	"DLL1,ERMARD"
TCGA.AM.5820	6	170572997	170918030	108	-0.6268	SMALL-LOSS	FOCAL	5	"DLL1,FAM120B,PDCD2,PSMB1,TBP"
TCGA.AA.A010.01A	6	170591883	170657190	10	-1.1966	SMALL-LOSS	FOCAL	2	"DLL1,FAM120B"
TCGA.AA.3982	6	170619062	170619839	3	-1.0562	SMALL-LOSS	FOCAL	1	FAM120B
TCGA.AA.A010.01A	6	170667262	170713627	5	-0.5504	SMALL-LOSS	FOCAL	1	FAM120B
TCGA.CK.5914.01A	6	170858047	170892551	14	-0.611	SMALL-LOSS	FOCAL	3	"PDCD2,PSMB1,TBP"
TCGA.AA.A010.01A	6	170873580	170892551	10	-0.5462	SMALL-LOSS	FOCAL	2	"PDCD2,TBP"
TCGA.AG.4009.01A	6	170886619	170892551	5	-1.1159	SMALL-LOSS	FOCAL	1	PDCD2
TCGA.AA.A00N.01A	7	193151	813646	34	-0.5548	SMALL-LOSS	FOCAL	5	"DNAAF5,FAM20C,PDGFA,PRKAR1B,WI2-2373I1.2"
TCGA.AA.A010.01A	7	558521	893024	42	-0.7031	SMALL-LOSS	FOCAL	4	"DNAAF5,PDGFA,PRKAR1B,SUN1"
TCGA.CK.5914.01A	7	814592	912814	26	-1.0696	SMALL-LOSS	FOCAL	2	"DNAAF5,SUN1"
TCGA.AG.3909.01A	7	881566	912814	20	-1.2011	SMALL-LOSS	FOCAL	1	SUN1
TCGA.AA.A010.01A	7	933313	974702	14	-0.9764	SMALL-LOSS	FOCAL	2	"ADAP1,GET4"
TCGA.AA.A01Q.01A	7	1097105	1275430	9	-1.0986	SMALL-LOSS	FOCAL	5	"C7orf50,GPER1,GPR146,UNCX,ZFAND2A"
TCGA.F4.6461	7	1141244	1717677	77	-0.6256	SMALL-LOSS	FOCAL	8	"C7orf50,INTS1,MAFK,MICALL2,PSMG3,TMEM184A,UNCX,ZFAND2A"
TCGA.AA.A010.01A	7	1474171	1539759	50	-0.5976	SMALL-LOSS	FOCAL	2	"INTS1,MICALL2"
TCGA.AF.3914.01A	7	1537997	1784196	16	-0.7343	SMALL-LOSS	FOCAL	5	"ELFN1,INTS1,MAFK,PSMG3,TMEM184A"
TCGA.AG.4009.01A	7	1538584	1590406	8	-0.5946	SMALL-LOSS	FOCAL	3	"INTS1,MAFK,TMEM184A"
TCGA.AG.A01W.01A	7	1942842	2438754	46	-0.5282	SMALL-LOSS	FOCAL	5	"EIF3B,FTSJ2,MAD1L1,NUDT1,SNX8"
TCGA.A6.6137	7	2003331	2023650	3	-0.7825	SMALL-LOSS	FOCAL	1	MAD1L1
TCGA.AA.A010.01A	7	2853894	2883440	3	-1.0173	SMALL-LOSS	FOCAL	1	GNA12
TCGA.AA.3862.01A	7	2949657	2978276	18	-0.5211	SMALL-LOSS	FOCAL	1	CARD11
TCGA.3L.AA1B	7	3610302	3610914	3	-0.8017	SMALL-LOSS	FOCAL	1	SDK1
TCGA.D5.7000	7	3610302	3614783	8	-0.9613	SMALL-LOSS	FOCAL	1	SDK1
TCGA.AF.3914.01A	7	5391412	5643466	30	-0.5254	SMALL-LOSS	FOCAL	4	"ACTB,FBXL18,FSCN1,TNRC18"
TCGA.AA.A00N.01A	7	5764905	5952427	19	-1.0621	SMALL-LOSS	FOCAL	3	"CCZ1,OCM,RNF216"
TCGA.AA.3844	7	5883521	5885731	3	-0.6348	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6511	7	5883521	5885731	3	-0.7312	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	7	5938890	5965092	7	-1.1297	SMALL-LOSS	FOCAL	1	CCZ1
TCGA.AZ.4684.01A	7	5949605	5972368	11	-0.9123	SMALL-LOSS	FOCAL	3	"CCZ1,RSPH10B,RSPH10B2"
TCGA.DM.A28M.01A	7	5951446	6004068	18	-1.0999	SMALL-LOSS	FOCAL	3	"CCZ1,RSPH10B,RSPH10B2"
TCGA.CK.5914.01A	7	6004068	6018189	6	-1.0343	SMALL-LOSS	FOCAL	3	"PMS2,RSPH10B,RSPH10B2"
TCGA.AA.A00N.01A	7	6004068	6043620	14	-1.3154	SMALL-LOSS	FOCAL	3	"PMS2,RSPH10B,RSPH10B2"
TCGA.AG.3909.01A	7	6620143	6798652	17	-0.5956	SMALL-LOSS	FOCAL	7	"C7orf26,RSPH10B,RSPH10B2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.A01Q.01A	7	6620143	6861855	37	-0.564	SMALL-LOSS	FOCAL	8	"C7orf26,CCZ1B,RSPH10B,RSPH10B2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.DM.A28M.01A	7	6799840	6852561	18	-1.1016	SMALL-LOSS	FOCAL	3	"CCZ1B,RSPH10B,RSPH10B2"
TCGA.AA.A02K.01A	7	6806341	6819192	2	-0.768	SMALL-LOSS	FOCAL	2	"RSPH10B,RSPH10B2"
TCGA.AG.A011.01A	7	6836162	6844540	4	-1.2959	SMALL-LOSS	FOCAL	3	"CCZ1B,RSPH10B,RSPH10B2"
TCGA.CL.4957	7	7043707	7052721	4	-1.2115	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	7	7198130	7232919	13	-0.6072	SMALL-LOSS	FOCAL	1	C1GALT1
TCGA.AA.3844	7	7794483	7796985	6	-0.9956	SMALL-LOSS	FOCAL	1	UMAD1
TCGA.AA.3850	7	8261970	8263692	4	-0.82145	SMALL-LOSS	FOCAL	1	ICA1
TCGA.AA.3850	7	8489910	8670993	110	-0.88455	SMALL-LOSS	FOCAL	1	NXPH1
TCGA.AA.3850	7	8800711	10185948	621	-0.93405	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3688	7	9042635	9047937	3	-1.0155	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6965	7	9767510	9771196	3	-0.8151	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	7	10065625	10083077	18	-1.019	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6170	7	11920872	11921418	4	-1.0416	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28F	7	11921008	11921418	3	-0.9443	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	7	11949946	11965351	9	-0.6211	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2689	7	12066983	12078202	8	-0.8944	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	7	12254444	12271426	7	-0.7463	SMALL-LOSS	FOCAL	1	TMEM106B
TCGA.AF.3913	7	13111068	13130068	8	-0.541	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	7	13218050	13266539	26	-0.7974	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	7	13415674	13485533	39	-0.6161	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	7	13443146	13471008	11	-1.2455	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6163	7	13590415	13590909	4	-0.7034	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6311	7	13590415	13591673	6	-0.7353	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	7	13590415	13643551	18	-1.1494	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	7	14259245	14280547	10	-1.0834	SMALL-LOSS	FOCAL	1	DGKB
TCGA.AA.3872	7	14845833	14846908	4	-1.2695	SMALL-LOSS	FOCAL	1	DGKB
TCGA.AA.3660	7	14927930	15163009	101	-0.5744	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6930	7	16570266	16571027	3	-1.0282	SMALL-LOSS	FOCAL	1	LRRC72
TCGA.AD.6963	7	16596650	16596857	3	-0.772	SMALL-LOSS	FOCAL	1	LRRC72
TCGA.AA.A00N.01A	7	16598467	16704996	18	-0.8254	SMALL-LOSS	FOCAL	3	"ANKMY2,BZW2,LRRC72"
TCGA.AG.3909.01A	7	16640349	16685079	10	-0.5174	SMALL-LOSS	FOCAL	1	ANKMY2
TCGA.AA.A00N.01A	7	16793527	16899164	13	-1.2372	SMALL-LOSS	FOCAL	3	"AGR2,AGR3,TSPAN13"
TCGA.AG.3909.01A	7	16815819	16839317	9	-0.7605	SMALL-LOSS	FOCAL	2	"AGR2,TSPAN13"
TCGA.AA.A010.01A	7	16815819	16841261	11	-0.8927	SMALL-LOSS	FOCAL	2	"AGR2,TSPAN13"
TCGA.AA.3941	7	16931240	16946224	12	-0.8162	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	7	16931465	16946224	11	-0.6382	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	7	17061783	17087850	18	-0.894	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	7	17581786	17585608	6	-1.3054	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	17833619	17855763	8	-0.6856	SMALL-LOSS	FOCAL	1	SNX13
TCGA.AA.3941	7	18161619	18171028	8	-0.6979	SMALL-LOSS	FOCAL	1	HDAC9
TCGA.AA.3673	7	18921611	18934477	6	-0.8464	SMALL-LOSS	FOCAL	1	HDAC9
TCGA.F5.6465	7	19462952	19467747	4	-1.0229	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	20668269	20725272	13	-1.2346	SMALL-LOSS	FOCAL	1	ABCB5
TCGA.AA.A00N.01A	7	20687121	20725272	9	-0.931	SMALL-LOSS	FOCAL	1	ABCB5
TCGA.AA.A00N.01A	7	20802789	21611374	19	-0.9497	SMALL-LOSS	FOCAL	3	"DNAH11,SP4,SP8"
TCGA.CK.5914.01A	7	20826310	21469857	5	-1.0367	SMALL-LOSS	FOCAL	2	"SP4,SP8"
TCGA.AA.3844	7	21678092	21679310	3	-0.9831	SMALL-LOSS	FOCAL	1	DNAH11
TCGA.CK.5914.01A	7	22768270	22861777	6	-0.6845	SMALL-LOSS	FOCAL	2	"IL6,TOMM7"
TCGA.AA.A00N.01A	7	23191656	23221686	7	-0.7447	SMALL-LOSS	FOCAL	2	"KLHL7,NUPL2"
TCGA.AG.3909.01A	7	23224672	23292899	8	-1.3	SMALL-LOSS	FOCAL	2	"GPNMB,NUPL2"
TCGA.CK.5914.01A	7	23224672	23292899	10	-1.0149	SMALL-LOSS	FOCAL	2	"GPNMB,NUPL2"
TCGA.AG.3909.01A	7	23650903	23768670	13	-0.5542	SMALL-LOSS	FOCAL	3	"CCDC126,FAM221A,STK31"
TCGA.AA.3977	7	24029754	24048363	10	-0.714	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	7	24032065	24056994	12	-0.704	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AATE	7	25353763	25371699	17	-0.9392	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AAT4	7	25776219	25783070	3	-1.0992	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	7	25989495	26251233	16	-0.8466	SMALL-LOSS	FOCAL	3	"CBX3,HNRNPA2B1,NFE2L3"
TCGA.AG.3909.01A	7	26217512	26236926	10	-0.8462	SMALL-LOSS	FOCAL	2	"HNRNPA2B1,NFE2L3"
TCGA.AA.3930.01A	7	26223266	26240098	10	-0.5209	SMALL-LOSS	FOCAL	2	"HNRNPA2B1,NFE2L3"
TCGA.AF.3914.01A	7	27134037	27194486	13	-0.8104	SMALL-LOSS	FOCAL	7	"HOXA1,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7"
TCGA.AA.A01Q.01A	7	27140328	27238796	21	-0.9416	SMALL-LOSS	FOCAL	10	"HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.AF.3914.01A	7	27219173	27285475	8	-0.977	SMALL-LOSS	FOCAL	3	"EVX1,HOXA11,HOXA13"
TCGA.AA.3844	7	29406469	29408386	4	-0.8608	SMALL-LOSS	FOCAL	1	CHN2
TCGA.AA.A00N.01A	7	29983542	30065891	10	-1.1802	SMALL-LOSS	FOCAL	2	"FKBP14,SCRN1"
TCGA.AG.3909.01A	7	29994754	30065891	6	-0.6355	SMALL-LOSS	FOCAL	2	"FKBP14,SCRN1"
TCGA.CK.5914.01A	7	30029751	30065891	6	-0.8556	SMALL-LOSS	FOCAL	2	"FKBP14,SCRN1"
TCGA.AA.A00N.01A	7	30536656	30671044	22	-0.7283	SMALL-LOSS	FOCAL	2	"GARS,GGCT"
TCGA.AG.3882	7	30729671	30737132	3	-0.6254	SMALL-LOSS	FOCAL	1	CRHR2
TCGA.AA.A00N.01A	7	30805893	30821561	4	-1.2378	SMALL-LOSS	FOCAL	1	FAM188B
TCGA.AA.A01Q.01A	7	31104397	31144415	13	-0.6825	SMALL-LOSS	FOCAL	1	ADCYAP1R1
TCGA.G4.6322	7	31609316	31654687	15	-0.5226	SMALL-LOSS	FOCAL	1	CCDC129
TCGA.AA.A00N.01A	7	32091092	32529801	10	-0.6939	SMALL-LOSS	FOCAL	2	"LSM5,PDE1C"
TCGA.CK.5914.01A	7	32526793	32529801	5	-0.8106	SMALL-LOSS	FOCAL	1	LSM5
TCGA.QL.A97D	7	33290930	33510615	66	-0.7327	SMALL-LOSS	FOCAL	1	BBS9
TCGA.AG.3906.01A	7	33384122	33397415	5	-0.6184	SMALL-LOSS	FOCAL	1	BBS9
TCGA.AZ.4614	7	34094686	34287257	84	-0.8451	SMALL-LOSS	FOCAL	1	BMPER
TCGA.AA.3844	7	34334956	34371282	11	-0.614	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	35050028	35293055	14	-0.5976	SMALL-LOSS	FOCAL	2	"DPY19L1,TBX20"
TCGA.A6.2686	7	35098914	35169722	4	-1.3162	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3814	7	35098914	35169722	4	-0.7478	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	36370541	36465535	23	-0.765	SMALL-LOSS	FOCAL	2	"ANLN,KIAA0895"
TCGA.AA.A00N.01A	7	36396504	36456641	11	-1.0801	SMALL-LOSS	FOCAL	2	"ANLN,KIAA0895"
TCGA.AA.3867	7	37641659	37666870	6	-0.7546	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	37889839	37949152	16	-0.7188	SMALL-LOSS	FOCAL	2	"NME8,SFRP4"
TCGA.AA.3844	7	37929567	37933666	7	-0.8837	SMALL-LOSS	FOCAL	1	NME8
TCGA.AA.3966	7	38652792	38655544	6	-0.7324	SMALL-LOSS	FOCAL	1	AMPH
TCGA.AA.3966	7	38741847	42385869	1178	-0.5478	SMALL-LOSS	FOCAL	9	"CDK13,GLI3,INHBA,MPLKIP,POU6F2,RALA,SUGCT,VPS41,YAE1D1"
TCGA.D5.6932	7	40409405	41034036	168	-1.1316	SMALL-LOSS	FOCAL	1	SUGCT
TCGA.AA.A00N.01A	7	42003901	42018146	7	-0.7849	SMALL-LOSS	FOCAL	1	GLI3
TCGA.AG.A01W.01A	7	42938465	42943406	3	-0.6737	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	43918274	43988179	8	-1.0446	SMALL-LOSS	FOCAL	3	"UBE2D4,URGCP,URGCP-MRPS24"
TCGA.AA.A01Q.01A	7	44146104	44154846	12	-1.1209	SMALL-LOSS	FOCAL	2	"AEBP1,POLD2"
TCGA.AA.A010.01A	7	44146104	44161413	18	-0.8658	SMALL-LOSS	FOCAL	2	"AEBP1,POLD2"
TCGA.AG.3882	7	44178742	44200098	3	-0.9079	SMALL-LOSS	FOCAL	2	"GCK,MYL7"
TCGA.AG.3891.01A	7	44259634	44281790	7	-0.6615	SMALL-LOSS	FOCAL	1	CAMK2B
TCGA.AA.3930.01A	7	44270561	44294072	11	-0.6105	SMALL-LOSS	FOCAL	1	CAMK2B
TCGA.AA.A01Q.01A	7	44270561	44364891	15	-0.791	SMALL-LOSS	FOCAL	1	CAMK2B
TCGA.AG.3906.01A	7	44272343	44286657	8	-0.5954	SMALL-LOSS	FOCAL	1	CAMK2B
TCGA.AG.A01W.01A	7	44577585	44587562	8	-0.5353	SMALL-LOSS	FOCAL	1	NPC1L1
TCGA.AA.A00N.01A	7	44795772	44836280	16	-0.5373	SMALL-LOSS	FOCAL	2	"PPIA,ZMIZ2"
TCGA.A6.3808.01A	7	44795772	45148394	72	-0.7659	SMALL-LOSS	FOCAL	8	"CCM2,H2AFV,MYO1G,NACAD,PPIA,PURB,TBRG4,ZMIZ2"
TCGA.AA.A010.01A	7	45002336	45011235	13	-0.5884	SMALL-LOSS	FOCAL	1	MYO1G
TCGA.AG.3891.01A	7	45003997	45007165	6	-0.6522	SMALL-LOSS	FOCAL	1	MYO1G
TCGA.AG.3906.01A	7	45003997	45008956	7	-0.8377	SMALL-LOSS	FOCAL	1	MYO1G
TCGA.AA.A00N.01A	7	45930108	45956775	6	-1.1951	SMALL-LOSS	FOCAL	2	"IGFBP1,IGFBP3"
TCGA.AG.3909.01A	7	45930108	45956775	6	-0.9211	SMALL-LOSS	FOCAL	2	"IGFBP1,IGFBP3"
TCGA.AA.3982	7	46270973	46275043	8	-0.9118	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	7	47164144	47184107	5	-0.5716	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	7	47178618	47180595	3	-1.0422	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	47944712	47982951	10	-0.5547	SMALL-LOSS	FOCAL	1	PKD1L1
TCGA.AG.3909.01A	7	47954980	48035580	19	-0.7604	SMALL-LOSS	FOCAL	3	"HUS1,PKD1L1,SUN3"
TCGA.CK.5914.01A	7	47987919	48035580	12	-0.8235	SMALL-LOSS	FOCAL	3	"HUS1,PKD1L1,SUN3"
TCGA.AA.A00N.01A	7	48019004	48260793	29	-0.5409	SMALL-LOSS	FOCAL	5	"ABCA13,C7orf57,HUS1,SUN3,UPP1"
TCGA.AA.3867	7	48303080	48305446	3	-0.8807	SMALL-LOSS	FOCAL	1	ABCA13
TCGA.DM.A1D6	7	48580941	48591587	3	-0.856	SMALL-LOSS	FOCAL	1	ABCA13
TCGA.AA.A00N.01A	7	50121343	50562992	27	-0.5554	SMALL-LOSS	FOCAL	5	"C7orf72,DDC,FIGNL1,IKZF1,ZPBP"
TCGA.AA.3941	7	50174573	50175680	3	-0.6142	SMALL-LOSS	FOCAL	1	C7orf72
TCGA.AA.3850	7	50269671	50300868	9	-1.20465	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3561	7	50689951	52194444	638	-0.9403	SMALL-LOSS	FOCAL	2	"COBL,GRB10"
TCGA.AA.3696	7	51951973	51953938	6	-0.6009	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3713	7	52558570	52990266	201	-0.5425	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6157	7	53214202	53218054	5	-1.155	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	7	54221841	54262769	16	-0.8439	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	7	54610362	54636659	4	-0.8993	SMALL-LOSS	FOCAL	1	VSTM2A
TCGA.AG.3891.01A	7	54614565	54621511	3	-1.036	SMALL-LOSS	FOCAL	1	VSTM2A
TCGA.AA.3977	7	54648405	54651668	7	-0.6299	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	7	54648532	54652510	7	-0.9892	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3696	7	54926396	54931978	4	-0.59	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6652	7	55291135	55291352	2	-0.5564	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	7	55459447	55479573	5	-0.9427	SMALL-LOSS	FOCAL	1	LANCL2
TCGA.AA.A010.01A	7	55459447	55498865	8	-1.0934	SMALL-LOSS	FOCAL	1	LANCL2
TCGA.AA.3509.01A	7	55588708	56129403	41	-0.5753	SMALL-LOSS	FOCAL	7	"CCT6A,GBAS,MRPS17,PSPH,SEPT14,VOPP1,ZNF713"
TCGA.AG.A01W.01A	7	56046910	56066995	6	-0.9967	SMALL-LOSS	FOCAL	1	GBAS
TCGA.AA.A010.01A	7	56120070	56130652	13	-0.6812	SMALL-LOSS	FOCAL	1	CCT6A
TCGA.CK.5914.01A	7	56120070	56145766	20	-1.0188	SMALL-LOSS	FOCAL	2	"CCT6A,SUMF2"
TCGA.AG.3909.01A	7	56120070	56147244	21	-0.9528	SMALL-LOSS	FOCAL	2	"CCT6A,SUMF2"
TCGA.AG.A01W.01A	7	56122767	56141479	6	-1.2245	SMALL-LOSS	FOCAL	2	"CCT6A,SUMF2"
TCGA.SS.A7HO	7	56807731	61888127	148	-1.0561	SMALL-LOSS	FOCAL	2	"ZNF479,ZNF716"
TCGA.F5.6465	7	57155737	57749917	127	-0.5593	SMALL-LOSS	FOCAL	2	"ZNF479,ZNF716"
TCGA.AA.3982	7	57589802	62418967	45	-0.5289	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A026	7	62190867	63114886	59	-0.6504	SMALL-LOSS	FOCAL	0	None
TCGA.SS.A7HO	7	63109269	63166233	12	-1.1921	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D9	7	63772568	63845090	26	-0.9281	SMALL-LOSS	FOCAL	1	ZNF736
TCGA.AA.3982	7	63823436	63849101	16	-0.883	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	7	63836531	63851402	12	-1.1457	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	64004056	64441685	26	-1.0017	SMALL-LOSS	FOCAL	5	"ZNF107,ZNF117,ZNF138,ZNF273,ZNF680"
TCGA.CM.6163	7	64694240	64856956	28	-0.8497	SMALL-LOSS	FOCAL	1	ZNF92
TCGA.AA.A00F.01A	7	65553745	65554544	3	-0.6188	SMALL-LOSS	FOCAL	1	ASL
TCGA.G4.6322	7	65960256	68860359	823	-0.8962	SMALL-LOSS	FOCAL	5	"KCTD7,RABGEF1,SBDS,TMEM248,TYW1"
TCGA.AG.4009.01A	7	66098244	66103796	3	-0.7783	SMALL-LOSS	FOCAL	1	KCTD7
TCGA.CA.6715	7	68395263	68396811	4	-1.0045	SMALL-LOSS	FOCAL	0	None
TCGA.AY.4070	7	71303006	71304748	3	-1.0924	SMALL-LOSS	FOCAL	1	CALN1
TCGA.A6.3808.01A	7	72281030	72721372	27	-1.3051	SMALL-LOSS	FOCAL	3	"NSUN5,POM121,TYW1B"
TCGA.CK.5914.01A	7	72285907	72410926	11	-0.5663	SMALL-LOSS	FOCAL	2	"POM121,TYW1B"
TCGA.AA.A010.01A	7	72396893	72410334	7	-1.1359	SMALL-LOSS	FOCAL	1	POM121
TCGA.AG.3909.01A	7	72396893	72410926	8	-1.0113	SMALL-LOSS	FOCAL	1	POM121
TCGA.AA.A010.01A	7	72755220	72879729	12	-1.1218	SMALL-LOSS	FOCAL	3	"BAZ1B,FKBP6,FZD9"
TCGA.D5.5539	7	72789994	72858482	3	-0.8416	SMALL-LOSS	FOCAL	2	"BAZ1B,FZD9"
TCGA.AA.A010.01A	7	73083717	73152935	26	-1.3029	SMALL-LOSS	FOCAL	5	"ABHD11,DNAJC30,STX1A,VPS37D,WBSCR22"
TCGA.AG.3909.01A	7	73097066	73119420	15	-0.5454	SMALL-LOSS	FOCAL	3	"DNAJC30,STX1A,WBSCR22"
TCGA.AA.A01Q.01A	7	73097066	73123316	17	-0.8578	SMALL-LOSS	FOCAL	3	"DNAJC30,STX1A,WBSCR22"
TCGA.CM.6675	7	73125178	73505187	40	-1.0458	SMALL-LOSS	FOCAL	8	"ABHD11,CLDN3,CLDN4,ELN,LIMK1,STX1A,WBSCR27,WBSCR28"
TCGA.AA.A010.01A	7	73467445	73480985	13	-0.8784	SMALL-LOSS	FOCAL	1	ELN
TCGA.AA.A010.01A	7	73601901	73609019	5	-1.0386	SMALL-LOSS	FOCAL	1	EIF4H
TCGA.CK.5914.01A	7	73660945	73666742	4	-0.7147	SMALL-LOSS	FOCAL	1	RFC2
TCGA.AG.A01W.01A	7	73835170	74201800	24	-0.7569	SMALL-LOSS	FOCAL	3	"GTF2I,GTF2IRD1,NCF1"
TCGA.AA.A01Q.01A	7	74009277	74016630	3	-0.9032	SMALL-LOSS	FOCAL	1	GTF2IRD1
TCGA.AG.A00C.01A	7	74301088	74310290	3	-0.9721	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	7	74301088	74486405	7	-0.6028	SMALL-LOSS	FOCAL	1	WBSCR16
TCGA.AG.4009.01A	7	75066765	75070643	4	-0.7977	SMALL-LOSS	FOCAL	1	POM121C
TCGA.A6.6654	7	75287302	75287844	3	-0.761	SMALL-LOSS	FOCAL	1	HIP1
TCGA.AA.A010.01A	7	75890105	75914896	8	-1.0821	SMALL-LOSS	FOCAL	1	SRRM3
TCGA.D5.5538	7	76143624	77171953	190	-0.6151	SMALL-LOSS	FOCAL	6	"CCDC146,FGL2,GSAP,POMZP3,PTPN12,UPK3B"
TCGA.AA.3867	7	76446321	76479954	6	-0.8439	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	7	76446321	76509505	17	-1.1691	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3860	7	76491479	76509505	6	-0.8386	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	7	76532851	76542079	5	-1.32175	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	77016623	77200348	7	-1.1975	SMALL-LOSS	FOCAL	2	"GSAP,PTPN12"
TCGA.AA.A00N.01A	7	77026228	77035298	4	-1.2412	SMALL-LOSS	FOCAL	1	GSAP
TCGA.AA.3850	7	77768216	77779143	8	-0.75145	SMALL-LOSS	FOCAL	1	MAGI2
TCGA.AA.3850	7	77810867	77818392	8	-0.76825	SMALL-LOSS	FOCAL	1	MAGI2
TCGA.AA.3850	7	77859610	84199916	2194	-0.61065	SMALL-LOSS	FOCAL	10	"CACNA2D1,CD36,GNAI1,GNAT3,HGF,MAGI2,PCLO,SEMA3A,SEMA3C,SEMA3E"
TCGA.AY.A8YK	7	78609929	79906928	380	-0.9703	SMALL-LOSS	FOCAL	2	"GNAI1,MAGI2"
TCGA.RU.A8FL	7	78829288	78848954	4	-0.592	SMALL-LOSS	FOCAL	1	MAGI2
TCGA.4T.AA8H	7	78841263	78848954	3	-0.7737	SMALL-LOSS	FOCAL	1	MAGI2
TCGA.NH.A6GA	7	79740359	79740760	3	-0.7222	SMALL-LOSS	FOCAL	0	None
TCGA.T9.A92H	7	80883997	80898094	11	-0.6221	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	7	81557790	81640891	24	-0.6616	SMALL-LOSS	FOCAL	1	CACNA2D1
TCGA.AG.3909.01A	7	82763596	82784513	3	-0.6598	SMALL-LOSS	FOCAL	1	PCLO
TCGA.G4.6298	7	83782434	83789519	6	-0.9701	SMALL-LOSS	FOCAL	1	SEMA3A
TCGA.5M.AATA	7	83782434	84423759	141	-0.5789	SMALL-LOSS	FOCAL	1	SEMA3A
TCGA.AA.3850	7	84218396	86628525	545	-0.90725	SMALL-LOSS	FOCAL	3	"GRM3,KIAA1324L,SEMA3D"
TCGA.AA.A02Y	7	84873728	84875266	3	-1.0019	SMALL-LOSS	FOCAL	0	None
TCGA.4T.AA8H	7	86536255	86536376	3	-0.9286	SMALL-LOSS	FOCAL	1	KIAA1324L
TCGA.AA.A00N.01A	7	87092022	87104644	3	-1.2451	SMALL-LOSS	FOCAL	1	ABCB4
TCGA.AG.4009.01A	7	87101873	87104644	2	-0.985	SMALL-LOSS	FOCAL	1	ABCB4
TCGA.CK.5914.01A	7	87507341	87533560	10	-0.6498	SMALL-LOSS	FOCAL	1	DBF4
TCGA.AA.A00N.01A	7	87835715	87913152	12	-1.1703	SMALL-LOSS	FOCAL	2	"SRI,STEAP4"
TCGA.AA.3850	7	87980921	89711821	576	-1.02365	SMALL-LOSS	FOCAL	2	"C7orf62,ZNF804B"
TCGA.AA.3518	7	89823788	89949596	43	-0.799	SMALL-LOSS	FOCAL	2	"CFAP69,STEAP2"
TCGA.AA.A010.01A	7	90338793	90900088	18	-0.6621	SMALL-LOSS	FOCAL	2	"CDK14,FZD1"
TCGA.A6.3808.01A	7	90747343	91779811	70	-0.7677	SMALL-LOSS	FOCAL	6	"AKAP9,CDK14,CYP51A1,FZD1,LRRD1,MTERF1"
TCGA.CK.5914.01A	7	90894205	91509284	6	-0.9658	SMALL-LOSS	FOCAL	2	"FZD1,MTERF1"
TCGA.DT.5265	7	91038105	91039807	3	-1.0421	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3842	7	91172007	91174892	3	-0.7678	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	7	91641696	91669975	10	-0.7806	SMALL-LOSS	FOCAL	1	AKAP9
TCGA.AA.A00N.01A	7	91641696	91671935	12	-1.0577	SMALL-LOSS	FOCAL	1	AKAP9
TCGA.AG.3909.01A	7	92078015	92085649	4	-0.6128	SMALL-LOSS	FOCAL	1	GATAD1
TCGA.CK.5914.01A	7	92078015	92085649	4	-0.7829	SMALL-LOSS	FOCAL	1	GATAD1
TCGA.AA.3939.01A	7	92116737	92125962	7	-0.6833	SMALL-LOSS	FOCAL	1	PEX1
TCGA.AA.A00N.01A	7	92140857	92252276	24	-1.2835	SMALL-LOSS	FOCAL	4	"CDK6,FAM133B,PEX1,RBM48"
TCGA.A6.3808.01A	7	92146542	92354893	24	-0.9064	SMALL-LOSS	FOCAL	4	"CDK6,FAM133B,PEX1,RBM48"
TCGA.AG.3909.01A	7	92148252	92219496	16	-0.5417	SMALL-LOSS	FOCAL	3	"FAM133B,PEX1,RBM48"
TCGA.CK.5914.01A	7	92158738	92210773	12	-0.8056	SMALL-LOSS	FOCAL	2	"FAM133B,RBM48"
TCGA.AA.A010.01A	7	93072868	93116181	9	-0.8692	SMALL-LOSS	FOCAL	1	CALCR
TCGA.AA.3811	7	93097230	93396079	87	-0.7305	SMALL-LOSS	FOCAL	1	CALCR
TCGA.AA.3982	7	93136811	93147882	7	-1.0747	SMALL-LOSS	FOCAL	1	CALCR
TCGA.AA.3844	7	93236701	93254499	7	-1.0777	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	7	93341408	93368977	13	-0.9812	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	7	93516079	93540055	7	-0.6453	SMALL-LOSS	FOCAL	2	"GNGT1,TFPI2"
TCGA.AA.3861.01A	7	93633428	94056952	37	-0.8067	SMALL-LOSS	FOCAL	2	"BET1,COL1A2"
TCGA.AG.A023.01A	7	94039499	94042952	6	-1.2694	SMALL-LOSS	FOCAL	1	COL1A2
TCGA.AA.3862.01A	7	94044464	94056952	15	-1.2593	SMALL-LOSS	FOCAL	1	COL1A2
TCGA.AA.A00N.01A	7	94146824	94162473	5	-0.9469	SMALL-LOSS	FOCAL	1	CASD1
TCGA.AA.A010.01A	7	94146824	94184764	17	-0.9693	SMALL-LOSS	FOCAL	1	CASD1
TCGA.CK.5914.01A	7	94285252	94539379	6	-0.6818	SMALL-LOSS	FOCAL	3	"PEG10,PPP1R9A,SGCE"
TCGA.CK.5914.01A	7	95216272	95224293	9	-0.6369	SMALL-LOSS	FOCAL	1	PDK4
TCGA.AA.A01C.01A	7	95222960	95225428	3	-1.2032	SMALL-LOSS	FOCAL	1	PDK4
TCGA.AA.3941	7	95298754	95302065	7	-0.9432	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A8YK	7	95518327	97545240	537	-0.9633	SMALL-LOSS	FOCAL	9	"ASNS,C7orf76,DLX5,DLX6,DYNC1I1,SDHAF3,SHFM1,SLC25A13,TAC1"
TCGA.AG.3909.01A	7	96635246	97498223	24	-0.6473	SMALL-LOSS	FOCAL	5	"ASNS,DLX5,DLX6,SDHAF3,TAC1"
TCGA.AG.4009.01A	7	96636928	96653574	5	-0.7145	SMALL-LOSS	FOCAL	2	"DLX5,DLX6"
TCGA.AA.3982	7	97264564	97264792	3	-1.3081	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	7	97289937	97306357	6	-1.21485	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	97814308	97852902	15	-1.2106	SMALL-LOSS	FOCAL	3	"BHLHA15,LMTK2,TECPR1"
TCGA.AA.A01Q.01A	7	97911626	97949306	12	-0.5171	SMALL-LOSS	FOCAL	2	"BAIAP2L1,BRI3"
TCGA.AA.A010.01A	7	97933460	97944735	6	-0.7807	SMALL-LOSS	FOCAL	1	BAIAP2L1
TCGA.AA.A010.01A	7	98248937	98498199	21	-0.9706	SMALL-LOSS	FOCAL	3	"NPTX2,TMEM130,TRRAP"
TCGA.AG.3909.01A	7	98478734	98509618	16	-0.6429	SMALL-LOSS	FOCAL	1	TRRAP
TCGA.AA.A02E.01A	7	98567685	98654804	35	-0.8579	SMALL-LOSS	FOCAL	2	"SMURF1,TRRAP"
TCGA.AA.A00N.01A	7	98569390	98601783	16	-0.5471	SMALL-LOSS	FOCAL	1	TRRAP
TCGA.AG.3909.01A	7	98569390	98628168	21	-0.5339	SMALL-LOSS	FOCAL	2	"SMURF1,TRRAP"
TCGA.AA.A00N.01A	7	98930907	98995453	19	-0.6662	SMALL-LOSS	FOCAL	3	"ARPC1A,ARPC1B,PDAP1"
TCGA.AA.A01Q.01A	7	98983290	99045697	27	-0.8403	SMALL-LOSS	FOCAL	6	"ARPC1B,ATP5J2-PTCD1,BUD31,CPSF4,PDAP1,PTCD1"
TCGA.AG.3909.01A	7	98984261	99032426	22	-0.6073	SMALL-LOSS	FOCAL	5	"ARPC1B,ATP5J2-PTCD1,BUD31,PDAP1,PTCD1"
TCGA.AA.A010.01A	7	98994238	99057661	27	-0.6663	SMALL-LOSS	FOCAL	6	"ATP5J2,ATP5J2-PTCD1,BUD31,CPSF4,PDAP1,PTCD1"
TCGA.AG.4009.01A	7	99008665	99045697	13	-0.5641	SMALL-LOSS	FOCAL	4	"ATP5J2-PTCD1,BUD31,CPSF4,PTCD1"
TCGA.AA.A00N.01A	7	99016941	99092191	27	-0.5668	SMALL-LOSS	FOCAL	7	"ATP5J2,ATP5J2-PTCD1,BUD31,CPSF4,PTCD1,ZNF394,ZNF789"
TCGA.AG.A01L.01A	7	99021371	99022381	2	-1.0203	SMALL-LOSS	FOCAL	2	"ATP5J2-PTCD1,PTCD1"
TCGA.AA.A00N.01A	7	99117745	99250149	21	-0.6481	SMALL-LOSS	FOCAL	6	"CYP3A5,FAM200A,GS1-259H13.2,ZKSCAN5,ZNF655,ZSCAN25"
TCGA.AG.3909.01A	7	99159950	99250149	13	-0.5682	SMALL-LOSS	FOCAL	4	"CYP3A5,GS1-259H13.2,ZNF655,ZSCAN25"
TCGA.AG.3906.01A	7	99264190	99277388	6	-0.5871	SMALL-LOSS	FOCAL	1	CYP3A5
TCGA.AA.A00N.01A	7	99461129	99526436	13	-1.0236	SMALL-LOSS	FOCAL	4	"CYP3A43,GJC3,OR2AE1,TRIM4"
TCGA.AA.A00N.01A	7	99661399	99703504	30	-1.2637	SMALL-LOSS	FOCAL	5	"AP4M1,COPS6,MCM7,ZNF3,ZSCAN21"
TCGA.AA.A01Q.01A	7	99686553	99722107	38	-0.6927	SMALL-LOSS	FOCAL	5	"AP4M1,CNPY4,COPS6,MCM7,TAF6"
TCGA.AG.3909.01A	7	99686895	99703504	23	-0.8605	SMALL-LOSS	FOCAL	3	"AP4M1,COPS6,MCM7"
TCGA.CK.5914.01A	7	99686895	99703504	23	-0.8008	SMALL-LOSS	FOCAL	3	"AP4M1,COPS6,MCM7"
TCGA.AG.4009.01A	7	99753982	99780304	16	-0.5651	SMALL-LOSS	FOCAL	4	"C7orf43,GAL3ST4,GPC2,STAG3"
TCGA.AF.3914.01A	7	99757570	99780304	14	-1.012	SMALL-LOSS	FOCAL	3	"GAL3ST4,GPC2,STAG3"
TCGA.AA.A01Q.01A	7	99778148	99786018	5	-0.7172	SMALL-LOSS	FOCAL	1	STAG3
TCGA.AA.A00N.01A	7	99779664	99794741	8	-0.9864	SMALL-LOSS	FOCAL	1	STAG3
TCGA.AG.A036.01A	7	99926516	99974869	2	-0.7342	SMALL-LOSS	FOCAL	2	"PILRA,PILRB"
TCGA.AA.A010.01A	7	99996839	100061386	26	-1.2585	SMALL-LOSS	FOCAL	5	"C7orf61,MEPCE,PILRA,PPP1R35,ZCWPW1"
TCGA.AF.3914.01A	7	100162483	100176256	8	-0.8799	SMALL-LOSS	FOCAL	4	"AGFG2,LRCH4,SAP25,ZASP"
TCGA.AG.3909.01A	7	100187602	100238337	26	-0.6383	SMALL-LOSS	FOCAL	4	"FBXO24,MOSPD3,PCOLCE,TFR2"
TCGA.AG.A01W.01A	7	100195901	100252724	36	-0.6372	SMALL-LOSS	FOCAL	5	"ACTL6B,FBXO24,MOSPD3,PCOLCE,TFR2"
TCGA.AF.3914.01A	7	100246132	100356117	41	-0.5322	SMALL-LOSS	FOCAL	6	"ACTL6B,EPO,GIGYF1,GNB2,POP7,ZAN"
TCGA.AG.4009.01A	7	100274130	100352802	32	-0.5232	SMALL-LOSS	FOCAL	5	"EPO,GIGYF1,GNB2,POP7,ZAN"
TCGA.AA.A010.01A	7	100318514	100352802	18	-1.0855	SMALL-LOSS	FOCAL	2	"EPO,ZAN"
TCGA.AG.A00C.01A	7	100333269	100336051	4	-0.599	SMALL-LOSS	FOCAL	1	ZAN
TCGA.AA.A02F.01A	7	100352802	100479233	54	-1.0767	SMALL-LOSS	FOCAL	5	"EPHB4,SLC12A9,SRRT,TRIP6,ZAN"
TCGA.AA.A02E.01A	7	100365413	100405007	24	-0.8668	SMALL-LOSS	FOCAL	2	"EPHB4,ZAN"
TCGA.AA.A02E.01A	7	100416094	100490739	38	-0.5864	SMALL-LOSS	FOCAL	6	"ACHE,EPHB4,SLC12A9,SRRT,TRIP6,UFSP1"
TCGA.AG.3909.01A	7	100421762	100485636	32	-0.633	SMALL-LOSS	FOCAL	4	"EPHB4,SLC12A9,SRRT,TRIP6"
TCGA.AA.A010.01A	7	100451770	100469118	15	-0.5506	SMALL-LOSS	FOCAL	2	"SLC12A9,TRIP6"
TCGA.AA.A00N.01A	7	100470199	100485636	16	-1.1907	SMALL-LOSS	FOCAL	2	"SRRT,TRIP6"
TCGA.AA.A01Q.01A	7	100481650	100490739	15	-0.8903	SMALL-LOSS	FOCAL	3	"ACHE,SRRT,UFSP1"
TCGA.AA.A00N.01A	7	100780637	100888173	39	-0.6358	SMALL-LOSS	FOCAL	9	"AP1S1,CLDN15,FIS1,MOGAT3,NAT16,PLOD3,SERPINE1,VGF,ZNHIT1"
TCGA.AG.3909.01A	7	100799823	100962174	38	-0.562	SMALL-LOSS	FOCAL	9	"AP1S1,CLDN15,FIS1,IFT22,MOGAT3,NAT16,PLOD3,VGF,ZNHIT1"
TCGA.AF.2692	7	101017369	101110156	19	-0.8222	SMALL-LOSS	FOCAL	1	COL26A1
TCGA.CM.6168	7	101357549	101376413	3	-1.3178	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	7	101833022	101848321	9	-0.5643	SMALL-LOSS	FOCAL	1	CUX1
TCGA.AG.A00C.01A	7	102212846	102311926	4	-0.9447	SMALL-LOSS	FOCAL	7	"POLR2J2,POLR2J3,RASA4,RASA4B,SPDYE2,SPDYE2B,UPK3BL"
TCGA.AA.A00N.01A	7	102665458	103003748	48	-0.6184	SMALL-LOSS	FOCAL	7	"ARMC10,DNAJC2,FBXL13,NAPEPLD,PMPCB,PSMC2,SLC26A5"
TCGA.AA.A010.01A	7	102716195	102768878	10	-1.0651	SMALL-LOSS	FOCAL	2	"ARMC10,NAPEPLD"
TCGA.AG.3909.01A	7	102938968	102949381	7	-0.7702	SMALL-LOSS	FOCAL	1	PMPCB
TCGA.AA.3811	7	103371543	103379483	9	-1.074	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.3949	7	103459934	103481729	17	-0.5376	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.3977	7	103459934	103481729	17	-0.9109	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.3972	7	103466057	103472986	9	-0.8915	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.3844	7	103466057	103481729	13	-1.1014	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.3872	7	103466057	103481729	13	-0.867	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.3989	7	103466057	103481729	13	-0.7472	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.3866	7	103468342	103481643	9	-0.6539	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.3941	7	103531982	103543902	10	-0.6222	SMALL-LOSS	FOCAL	1	RELN
TCGA.AA.A00N.01A	7	103828667	103969256	7	-1.1386	SMALL-LOSS	FOCAL	2	"LHFPL3,ORC5"
TCGA.AA.3977	7	104267555	104271092	5	-0.6562	SMALL-LOSS	FOCAL	1	LHFPL3
TCGA.AA.3864	7	104899968	104905587	3	-0.8239	SMALL-LOSS	FOCAL	1	SRPK2
TCGA.AA.A02F.01A	7	105099564	105187370	17	-1.1827	SMALL-LOSS	FOCAL	2	"PUS7,RINT1"
TCGA.AA.3858	7	105586852	105587440	3	-0.9444	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	105732204	106300593	20	-1.14	SMALL-LOSS	FOCAL	3	"CCDC71L,NAMPT,SYPL1"
TCGA.AA.3982	7	105995669	105997945	6	-0.9592	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	7	105996346	105997945	4	-0.7812	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A71X	7	106074446	106117961	13	-0.742	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	7	106189869	106190329	3	-1.1957	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6513	7	107004081	107168334	20	-0.6973	SMALL-LOSS	FOCAL	2	"COG5,GPR22"
TCGA.AA.A00N.01A	7	107167665	107204210	5	-0.8035	SMALL-LOSS	FOCAL	1	COG5
TCGA.AG.3909.01A	7	107194662	107224276	11	-0.852	SMALL-LOSS	FOCAL	3	"BCAP29,COG5,DUS4L"
TCGA.CK.5914.01A	7	107194662	107224276	11	-0.8978	SMALL-LOSS	FOCAL	3	"BCAP29,COG5,DUS4L"
TCGA.AG.4009.01A	7	107211548	107224276	7	-0.6362	SMALL-LOSS	FOCAL	2	"BCAP29,DUS4L"
TCGA.AA.A00N.01A	7	107303694	107315363	4	-1.0961	SMALL-LOSS	FOCAL	1	SLC26A4
TCGA.AA.A00N.01A	7	107389278	107407980	7	-1.1228	SMALL-LOSS	FOCAL	2	"CBLL1,SLC26A3"
TCGA.AA.A00N.01A	7	107531635	107546674	8	-1.0398	SMALL-LOSS	FOCAL	1	DLD
TCGA.AA.A00N.01A	7	107618465	107669461	10	-0.6582	SMALL-LOSS	FOCAL	2	"LAMB1,LAMB4"
TCGA.AA.A010.01A	7	107864122	108119599	10	-1.3078	SMALL-LOSS	FOCAL	2	"NRCAM,PNPLA8"
TCGA.AA.3844	7	107872134	107875863	5	-0.6407	SMALL-LOSS	FOCAL	1	NRCAM
TCGA.AA.3850	7	108408006	111056262	701	-0.83415	SMALL-LOSS	FOCAL	3	"C7orf66,IMMP2L,LRRN3"
TCGA.AY.A69D	7	109572508	109851355	75	-0.5464	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3807	7	109616276	110678369	317	-0.8694	SMALL-LOSS	FOCAL	1	IMMP2L
TCGA.AA.3984	7	109651694	110819561	343	-0.6077	SMALL-LOSS	FOCAL	2	"IMMP2L,LRRN3"
TCGA.AY.A69D	7	109856124	109973243	30	-1.2991	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6626	7	109953922	109957499	3	-0.5938	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A69D	7	110027723	110143018	48	-1.1581	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A69D	7	110214133	110419153	73	-0.6167	SMALL-LOSS	FOCAL	1	IMMP2L
TCGA.DM.A0XD	7	110322161	110790006	127	-0.6416	SMALL-LOSS	FOCAL	2	"IMMP2L,LRRN3"
TCGA.AA.3688	7	110410651	110416611	3	-1.2771	SMALL-LOSS	FOCAL	1	IMMP2L
TCGA.AZ.6600	7	110429010	110432384	5	-1.0639	SMALL-LOSS	FOCAL	1	IMMP2L
TCGA.EI.6508	7	110467220	110488366	9	-0.6821	SMALL-LOSS	FOCAL	1	IMMP2L
TCGA.AA.3860	7	110594090	110868076	51	-0.6818	SMALL-LOSS	FOCAL	2	"IMMP2L,LRRN3"
TCGA.AD.6548	7	110611437	110819561	40	-1.0774	SMALL-LOSS	FOCAL	2	"IMMP2L,LRRN3"
TCGA.AY.A69D	7	110624165	110678927	6	-0.6842	SMALL-LOSS	FOCAL	1	IMMP2L
TCGA.A6.6653	7	110687159	110771560	27	-0.6148	SMALL-LOSS	FOCAL	2	"IMMP2L,LRRN3"
TCGA.EI.6513	7	110749762	110875152	21	-0.683	SMALL-LOSS	FOCAL	2	"IMMP2L,LRRN3"
TCGA.AA.3975	7	110790006	110818457	3	-0.7882	SMALL-LOSS	FOCAL	1	IMMP2L
TCGA.D5.5537	7	110926723	111074970	17	-1.1836	SMALL-LOSS	FOCAL	1	IMMP2L
TCGA.AA.A00N.01A	7	111161322	111387285	11	-0.5151	SMALL-LOSS	FOCAL	2	"DOCK4,IMMP2L"
TCGA.AA.A01C.01A	7	111381101	111382019	3	-1.0545	SMALL-LOSS	FOCAL	1	DOCK4
TCGA.AA.3850	7	112400059	115865511	665	-0.85895	SMALL-LOSS	FOCAL	8	"C7orf60,FOXP2,GPR85,MDFIC,PPP1R3A,TES,TFEC,TMEM168"
TCGA.AA.A010.01A	7	114293963	116339124	36	-0.6228	SMALL-LOSS	FOCAL	7	"CAV1,CAV2,FOXP2,MDFIC,MET,TES,TFEC"
TCGA.AG.3909.01A	7	116140302	116166542	4	-0.6414	SMALL-LOSS	FOCAL	2	"CAV1,CAV2"
TCGA.AG.4009.01A	7	116140302	116166542	4	-1.1477	SMALL-LOSS	FOCAL	2	"CAV1,CAV2"
TCGA.AA.A00N.01A	7	116140302	116339124	8	-0.6807	SMALL-LOSS	FOCAL	3	"CAV1,CAV2,MET"
TCGA.AA.3861.01A	7	116520102	117024762	51	-0.548	SMALL-LOSS	FOCAL	4	"ASZ1,CAPZA2,ST7,WNT2"
TCGA.CK.5914.01A	7	116557732	116606061	7	-0.5758	SMALL-LOSS	FOCAL	2	"CAPZA2,ST7"
TCGA.AG.3909.01A	7	117060190	117066853	3	-0.574	SMALL-LOSS	FOCAL	1	ASZ1
TCGA.D5.6923	7	117142475	117162953	3	-1.3102	SMALL-LOSS	FOCAL	1	CFTR
TCGA.AA.A00N.01A	7	117227784	117254629	10	-1.2754	SMALL-LOSS	FOCAL	1	CFTR
TCGA.AA.3850	7	117669813	118442593	187	-0.69335	SMALL-LOSS	FOCAL	2	"ANKRD7,LSM8"
TCGA.AF.4110	7	117711961	117714036	3	-1.1024	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01R	7	118042671	118136102	22	-0.5342	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A71X	7	118393357	118421594	6	-0.7516	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	7	120593311	120596119	3	-0.6796	SMALL-LOSS	FOCAL	1	ING3
TCGA.AG.A036.01A	7	121729306	121730887	4	-0.5778	SMALL-LOSS	FOCAL	1	AASS
TCGA.AG.3909.01A	7	121942084	121965484	6	-0.6688	SMALL-LOSS	FOCAL	2	"CADPS2,FEZF1"
TCGA.EI.6508	7	122096970	122464400	75	-0.6683	SMALL-LOSS	FOCAL	3	"CADPS2,RNF133,RNF148"
TCGA.AA.3867	7	125157246	125173183	7	-0.967	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5537	7	126400713	126762243	124	-0.9546	SMALL-LOSS	FOCAL	1	GRM8
TCGA.DM.A28H	7	126648055	126718479	24	-0.6293	SMALL-LOSS	FOCAL	1	GRM8
TCGA.AA.A00N.01A	7	126746498	127240208	21	-0.8918	SMALL-LOSS	FOCAL	5	"ARF5,FSCN3,GCC1,GRM8,ZNF800"
TCGA.AG.4009.01A	7	127013368	127236335	13	-0.5618	SMALL-LOSS	FOCAL	4	"ARF5,FSCN3,GCC1,ZNF800"
TCGA.AF.3914.01A	7	127026073	127230099	7	-1.2272	SMALL-LOSS	FOCAL	3	"ARF5,GCC1,ZNF800"
TCGA.AG.4009.01A	7	127668695	127670091	3	-0.8826	SMALL-LOSS	FOCAL	2	"LRRC4,SND1"
TCGA.AA.A01Q.01A	7	127668695	127726941	9	-0.6718	SMALL-LOSS	FOCAL	2	"LRRC4,SND1"
TCGA.AA.A010.01A	7	127961291	127965851	4	-0.6623	SMALL-LOSS	FOCAL	1	RBM28
TCGA.DY.A1DF	7	127962834	127965358	3	-0.633	SMALL-LOSS	FOCAL	1	RBM28
TCGA.A6.3808.01A	7	128034277	128141778	21	-1.0868	SMALL-LOSS	FOCAL	3	"HILPDA,IMPDH1,METTL2B"
TCGA.BM.6198	7	128098070	128106869	3	-1.03205	SMALL-LOSS	FOCAL	1	HILPDA
TCGA.A6.3808.01A	7	128434360	128547095	74	-1.0457	SMALL-LOSS	FOCAL	5	"ATP6V1F,CCDC136,FLNC,KCP,LOC100130705"
TCGA.AA.A010.01A	7	128489983	128546273	37	-0.8517	SMALL-LOSS	FOCAL	4	"ATP6V1F,FLNC,KCP,LOC100130705"
TCGA.AA.A00N.01A	7	128784774	128807567	8	-1.0537	SMALL-LOSS	FOCAL	1	TSPAN33
TCGA.AG.4009.01A	7	128801450	128807567	7	-0.8759	SMALL-LOSS	FOCAL	1	TSPAN33
TCGA.CK.5914.01A	7	128804264	128851459	13	-0.5287	SMALL-LOSS	FOCAL	2	"SMO,TSPAN33"
TCGA.AA.A00N.01A	7	129064668	129083811	5	-1.3113	SMALL-LOSS	FOCAL	2	"AHCYL2,STRIP2"
TCGA.CK.5914.01A	7	129066237	129083811	4	-0.6481	SMALL-LOSS	FOCAL	2	"AHCYL2,STRIP2"
TCGA.AA.A010.01A	7	129083811	129098009	8	-0.9976	SMALL-LOSS	FOCAL	1	STRIP2
TCGA.CK.5914.01A	7	129100076	129317449	12	-0.5968	SMALL-LOSS	FOCAL	3	"NRF1,SMKR1,STRIP2"
TCGA.AG.4009.01A	7	129102748	129125383	8	-0.6686	SMALL-LOSS	FOCAL	1	STRIP2
TCGA.AA.A00N.01A	7	129103837	129317449	10	-1.3081	SMALL-LOSS	FOCAL	3	"NRF1,SMKR1,STRIP2"
TCGA.AA.A00N.01A	7	129761853	129818205	11	-1.0345	SMALL-LOSS	FOCAL	2	"KLHDC10,TMEM209"
TCGA.AA.A00L.01A	7	130080693	130357545	15	-0.5456	SMALL-LOSS	FOCAL	4	"CEP41,COPG2,MEST,TSGA13"
TCGA.AA.A00N.01A	7	130135167	130368373	29	-1.145	SMALL-LOSS	FOCAL	3	"COPG2,MEST,TSGA13"
TCGA.AA.A010.01A	7	130295776	130417908	17	-1.0173	SMALL-LOSS	FOCAL	3	"COPG2,KLF14,TSGA13"
TCGA.D5.6931	7	131564706	131565350	3	-1.0592	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5864	7	132573365	132607170	8	-0.9437	SMALL-LOSS	FOCAL	1	CHCHD3
TCGA.AG.A00C.01A	7	133160030	133580304	6	-0.9226	SMALL-LOSS	FOCAL	1	EXOC4
TCGA.AG.3598	7	133200521	133709786	124	-0.8419	SMALL-LOSS	FOCAL	1	EXOC4
TCGA.AA.3941	7	133340629	133352317	9	-1.1015	SMALL-LOSS	FOCAL	1	EXOC4
TCGA.AG.A026	7	133755675	133760789	4	-1.2555	SMALL-LOSS	FOCAL	0	None
TCGA.CM.4752	7	134225826	134231614	3	-1.2829	SMALL-LOSS	FOCAL	1	AKR1B10
TCGA.AG.A00C.01A	7	134250168	134256303	4	-0.7429	SMALL-LOSS	FOCAL	1	AKR1B15
TCGA.NH.A5IV	7	134573357	134923505	93	-0.7346	SMALL-LOSS	FOCAL	6	"AGBL3,C7orf49,CALD1,STRA8,TMEM140,WDR91"
TCGA.AA.3941	7	134684624	134690433	3	-0.9318	SMALL-LOSS	FOCAL	1	AGBL3
TCGA.AG.4009.01A	7	134889000	134894287	5	-0.7203	SMALL-LOSS	FOCAL	1	WDR91
TCGA.AA.A00N.01A	7	134890632	134943136	14	-1.2672	SMALL-LOSS	FOCAL	2	"STRA8,WDR91"
TCGA.AA.3941	7	135064737	135103080	10	-0.5331	SMALL-LOSS	FOCAL	1	CNOT4
TCGA.EI.6883	7	135214059	135216806	4	-0.8618	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	135315053	135358780	12	-0.5564	SMALL-LOSS	FOCAL	2	"C7orf73,NUP205"
TCGA.AA.A00L.01A	7	135636246	137080293	12	-0.5231	SMALL-LOSS	FOCAL	5	"CHRM2,DGKI,LUZP6,MTPN,PTN"
TCGA.AA.3941	7	135839457	135847317	8	-0.9741	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	7	136025212	136793349	220	-0.85665	SMALL-LOSS	FOCAL	1	CHRM2
TCGA.AA.A010.01A	7	136587868	137075919	9	-0.6816	SMALL-LOSS	FOCAL	3	"CHRM2,DGKI,PTN"
TCGA.AA.3867	7	136793349	136800485	9	-0.6902	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	7	136800832	137425300	231	-0.65405	SMALL-LOSS	FOCAL	2	"DGKI,PTN"
TCGA.AA.3941	7	137416077	137431452	11	-0.9169	SMALL-LOSS	FOCAL	1	DGKI
TCGA.F5.6465	7	137566505	137692997	52	-0.5945	SMALL-LOSS	FOCAL	2	"CREB3L2,LOC100130880"
TCGA.AA.3844	7	137816373	137817624	4	-0.775	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	7	137816373	137817624	4	-0.5643	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	7	137816373	137817624	4	-0.8647	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3975	7	137816731	137817624	3	-0.9972	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	138279274	138314730	7	-0.7994	SMALL-LOSS	FOCAL	1	SVOPL
TCGA.NH.A6GA	7	138503099	138504963	3	-0.8697	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	7	138711249	138758605	10	-0.8331	SMALL-LOSS	FOCAL	2	"ZC3HAV1,ZC3HAV1L"
TCGA.CK.5914.01A	7	139086881	139106870	7	-0.6953	SMALL-LOSS	FOCAL	2	"C7orf55-LUC7L2,LUC7L2"
TCGA.AA.A00N.01A	7	139719763	140218431	58	-0.7125	SMALL-LOSS	FOCAL	7	"DENND2A,KDM7A,MKRN1,PARP12,RAB19,SLC37A3,TBXAS1"
TCGA.AA.A010.01A	7	139733986	139799647	15	-0.7642	SMALL-LOSS	FOCAL	2	"KDM7A,PARP12"
TCGA.AA.A010.01A	7	139876507	140082196	15	-1.0383	SMALL-LOSS	FOCAL	2	"KDM7A,SLC37A3"
TCGA.AA.A010.01A	7	140287405	140390497	9	-0.8979	SMALL-LOSS	FOCAL	2	"ADCK2,DENND2A"
TCGA.AF.3914.01A	7	140373093	140374359	2	-1.2954	SMALL-LOSS	FOCAL	1	ADCK2
TCGA.AA.A00N.01A	7	140373093	140487265	21	-0.6992	SMALL-LOSS	FOCAL	3	"ADCK2,BRAF,NDUFB2"
TCGA.AA.A00N.01A	7	141386318	141423703	8	-0.8368	SMALL-LOSS	FOCAL	2	"KIAA1147,WEE2"
TCGA.AA.3844	7	141710898	141717224	4	-0.9213	SMALL-LOSS	FOCAL	1	MGAM
TCGA.G5.6235	7	141770059	141799116	5	-0.712	SMALL-LOSS	FOCAL	1	MGAM
TCGA.AG.A01W.01A	7	142364986	142369329	6	-0.8731	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	7	142401703	142402649	3	-1.0529	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	7	142560945	142575363	24	-0.6041	SMALL-LOSS	FOCAL	2	"EPHB6,TRPV6"
TCGA.AG.A01L.01A	7	142654877	142659195	6	-0.5162	SMALL-LOSS	FOCAL	1	KEL
TCGA.AA.A00N.01A	7	142964659	143000830	13	-0.7523	SMALL-LOSS	FOCAL	3	"CASP2,GSTK1,TMEM139"
TCGA.AA.A010.01A	7	143027824	143043922	13	-1.2653	SMALL-LOSS	FOCAL	1	CLCN1
TCGA.AA.A00N.01A	7	143028271	143140938	48	-0.523	SMALL-LOSS	FOCAL	5	"CLCN1,EPHA1,FAM131B,TAS2R60,ZYX"
TCGA.AG.4009.01A	7	143054326	143104637	25	-0.8182	SMALL-LOSS	FOCAL	3	"EPHA1,FAM131B,ZYX"
TCGA.AF.3914.01A	7	143056375	143096313	20	-0.8935	SMALL-LOSS	FOCAL	3	"EPHA1,FAM131B,ZYX"
TCGA.AG.3909.01A	7	143056375	143104637	22	-0.6576	SMALL-LOSS	FOCAL	3	"EPHA1,FAM131B,ZYX"
TCGA.AA.A01Q.01A	7	143085274	143095667	14	-0.5962	SMALL-LOSS	FOCAL	2	"EPHA1,ZYX"
TCGA.AA.A010.01A	7	143095667	143140938	8	-0.7049	SMALL-LOSS	FOCAL	2	"EPHA1,TAS2R60"
TCGA.A6.3810.01A	7	143883975	143928964	3	-1.0155	SMALL-LOSS	FOCAL	1	ARHGEF35
TCGA.CM.4752	7	146328332	146360070	9	-0.5228	SMALL-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.3667	7	146674850	146678507	3	-0.6721	SMALL-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.3844	7	147445494	147471709	6	-0.7236	SMALL-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.3685	7	147714780	147716164	5	-0.9272	SMALL-LOSS	FOCAL	1	CNTNAP2
TCGA.F5.6464	7	147714780	147716164	5	-0.6401	SMALL-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.3852	7	147715393	147716164	4	-1.3149	SMALL-LOSS	FOCAL	1	CNTNAP2
TCGA.AA.A01R	7	148417162	148458643	14	-0.6304	SMALL-LOSS	FOCAL	1	CUL1
TCGA.AA.3509.01A	7	148463616	148497543	13	-0.5487	SMALL-LOSS	FOCAL	1	CUL1
TCGA.A6.3808.01A	7	148711954	148850995	18	-0.9606	SMALL-LOSS	FOCAL	4	"PDIA4,ZNF398,ZNF425,ZNF786"
TCGA.AA.A00N.01A	7	148823200	149316966	33	-0.5497	SMALL-LOSS	FOCAL	7	"ZNF212,ZNF282,ZNF398,ZNF425,ZNF746,ZNF777,ZNF783"
TCGA.AA.A010.01A	7	148936781	148950633	5	-1.0556	SMALL-LOSS	FOCAL	1	ZNF212
TCGA.AA.3556	7	149054241	149158434	36	-0.6484	SMALL-LOSS	FOCAL	1	ZNF777
TCGA.AG.4009.01A	7	149128840	149191413	12	-1.0078	SMALL-LOSS	FOCAL	2	"ZNF746,ZNF777"
TCGA.AA.A010.01A	7	149416648	149508678	62	-0.9319	SMALL-LOSS	FOCAL	3	"KRBA1,SSPO,ZNF467"
TCGA.AG.3891.01A	7	149510671	149525958	21	-0.6622	SMALL-LOSS	FOCAL	1	SSPO
TCGA.AA.3967.01A	7	149518459	149529815	14	-0.5487	SMALL-LOSS	FOCAL	1	SSPO
TCGA.AG.3909.01A	7	149557450	149572610	5	-0.9812	SMALL-LOSS	FOCAL	2	"ATP6V0E2,ZNF862"
TCGA.AA.3864	7	149633545	149662627	5	-1.1058	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3695	7	149642018	149662627	3	-0.7983	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3854	7	149642018	149662627	3	-1.2763	SMALL-LOSS	FOCAL	0	None
TCGA.AY.4070	7	149642018	149662627	3	-1.2249	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3866	7	149642018	149672047	4	-0.9384	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	7	149657103	149672047	3	-0.8403	SMALL-LOSS	FOCAL	0	None
TCGA.SS.A7HO	7	149988106	150008189	3	-1.1431	SMALL-LOSS	FOCAL	1	ACTR3C
TCGA.AA.A01Q.01A	7	150643933	150654328	10	-0.843	SMALL-LOSS	FOCAL	1	KCNH2
TCGA.A6.6653	7	150702590	150822006	25	-0.6041	SMALL-LOSS	FOCAL	9	"ABCB8,AGAP3,ASIC3,ATG9B,CDK5,FASTK,NOS3,SLC4A2,TMUB1"
TCGA.AA.A01Q.01A	7	150725553	150749494	19	-0.6086	SMALL-LOSS	FOCAL	2	"ABCB8,ASIC3"
TCGA.AA.A01Q.01A	7	150759003	150779230	25	-0.7402	SMALL-LOSS	FOCAL	3	"FASTK,SLC4A2,TMUB1"
TCGA.AF.3914.01A	7	150767007	150772752	9	-1.2488	SMALL-LOSS	FOCAL	1	SLC4A2
TCGA.AG.4009.01A	7	150776535	150825616	11	-1.0416	SMALL-LOSS	FOCAL	3	"AGAP3,FASTK,TMUB1"
TCGA.AA.A010.01A	7	150831440	150915135	18	-0.8559	SMALL-LOSS	FOCAL	5	"ABCF2,AGAP3,ASB10,GBX1,IQCA1L"
TCGA.AA.A01Q.01A	7	150878019	151136892	37	-0.7553	SMALL-LOSS	FOCAL	8	"ABCF2,ASB10,CHPF2,CRYGN,IQCA1L,NUB1,SMARCD3,WDR86"
TCGA.AA.A00N.01A	7	150911110	151074121	40	-1.2321	SMALL-LOSS	FOCAL	4	"ABCF2,CHPF2,NUB1,SMARCD3"
TCGA.AF.3914.01A	7	150937161	150945523	6	-1.2705	SMALL-LOSS	FOCAL	1	SMARCD3
TCGA.AA.A00L.01A	7	150938551	150945523	5	-0.5624	SMALL-LOSS	FOCAL	1	SMARCD3
TCGA.AA.3509.01A	7	151046134	151057180	6	-1.0284	SMALL-LOSS	FOCAL	1	NUB1
TCGA.AG.A01W.01A	7	151153355	151166202	6	-0.6941	SMALL-LOSS	FOCAL	1	RHEB
TCGA.CM.6675	7	151631364	153712327	616	-1.0889	SMALL-LOSS	FOCAL	6	"ACTR3B,DPP6,GALNT11,GALNTL5,KMT2C,XRCC2"
TCGA.CA.5254	7	151790025	153077615	340	-0.5472	SMALL-LOSS	FOCAL	4	"ACTR3B,GALNT11,KMT2C,XRCC2"
TCGA.RU.A8FL	7	152501977	152535907	3	-0.5609	SMALL-LOSS	FOCAL	1	ACTR3B
TCGA.AG.A02N	7	152709571	152976245	131	-0.8474	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DG	7	152932262	155232286	988	-0.5743	SMALL-LOSS	FOCAL	4	"DPP6,HTR5A,INSIG1,PAXIP1"
TCGA.EI.6508	7	153918877	153920191	3	-1.2719	SMALL-LOSS	FOCAL	1	DPP6
TCGA.AA.3850	7	154200129	154202182	6	-1.24315	SMALL-LOSS	FOCAL	1	DPP6
TCGA.AH.6897	7	154427997	154428417	3	-0.6055	SMALL-LOSS	FOCAL	1	DPP6
TCGA.AA.A00N.01A	7	154782650	155301540	25	-1.2184	SMALL-LOSS	FOCAL	5	"CNPY1,EN2,HTR5A,INSIG1,PAXIP1"
TCGA.AA.A01Q.01A	7	155093225	155255038	7	-0.8432	SMALL-LOSS	FOCAL	2	"EN2,INSIG1"
TCGA.AA.3941	7	155296179	155296614	3	-1.0866	SMALL-LOSS	FOCAL	1	CNPY1
TCGA.AG.3891.01A	7	155493440	155556461	10	-0.6544	SMALL-LOSS	FOCAL	1	RBM33
TCGA.AF.3914.01A	7	155598950	155604466	3	-1.2725	SMALL-LOSS	FOCAL	1	SHH
TCGA.AA.3982	7	156298610	156308687	6	-1.068	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6513	7	156474682	156578130	20	-0.6786	SMALL-LOSS	FOCAL	1	LMBR1
TCGA.AA.A00N.01A	7	156685568	156961683	19	-0.6921	SMALL-LOSS	FOCAL	4	"LMBR1,MNX1,NOM1,UBE3C"
TCGA.AG.3909.01A	7	156742763	156746755	3	-0.9316	SMALL-LOSS	FOCAL	1	NOM1
TCGA.AF.3914.01A	7	156742763	156798227	12	-0.6314	SMALL-LOSS	FOCAL	2	"MNX1,NOM1"
TCGA.AA.A02E.01A	7	156745116	156756550	6	-0.669	SMALL-LOSS	FOCAL	1	NOM1
TCGA.AA.A01Q.01A	7	156745116	156798227	11	-0.6744	SMALL-LOSS	FOCAL	2	"MNX1,NOM1"
TCGA.AA.A00N.01A	7	157046621	158494455	63	-0.6654	SMALL-LOSS	FOCAL	4	"DNAJB6,NCAPG2,PTPRN2,UBE3C"
TCGA.AG.A026	7	157173472	159119219	569	-0.7575	SMALL-LOSS	FOCAL	6	"DNAJB6,ESYT2,NCAPG2,PTPRN2,VIPR2,WDR60"
TCGA.AA.A01Q.01A	7	157208663	157873954	15	-0.7097	SMALL-LOSS	FOCAL	2	"DNAJB6,PTPRN2"
TCGA.AA.3688	7	157755799	157756324	3	-1.1543	SMALL-LOSS	FOCAL	1	PTPRN2
TCGA.5M.AAT5	7	158102814	158136985	9	-0.5757	SMALL-LOSS	FOCAL	1	PTPRN2
TCGA.AA.A00N.01A	7	158580687	158936978	44	-0.6633	SMALL-LOSS	FOCAL	3	"ESYT2,VIPR2,WDR60"
TCGA.CK.5914.01A	7	158591662	158727067	23	-0.9458	SMALL-LOSS	FOCAL	2	"ESYT2,WDR60"
TCGA.AA.3850	7	159054560	159055700	5	-1.06055	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	7	159054560	159055700	5	-0.6098	SMALL-LOSS	FOCAL	0	None
TCGA.CK.4947	7	159054560	159055700	5	-0.915	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5662	8	164983	252855	57	-1.077	SMALL-LOSS	FOCAL	1	ZNF596
TCGA.G4.6303	8	164983	716893	229	-1.0889	SMALL-LOSS	FOCAL	4	"ERICH1,FBXO25,TDRP,ZNF596"
TCGA.A6.2671	8	164983	770836	246	-0.7573	SMALL-LOSS	FOCAL	4	"ERICH1,FBXO25,TDRP,ZNF596"
TCGA.AA.3662	8	164983	1372398	513	-0.5884	SMALL-LOSS	FOCAL	4	"ERICH1,FBXO25,TDRP,ZNF596"
TCGA.AZ.5403	8	164983	1779978	678	-0.623	SMALL-LOSS	FOCAL	7	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,TDRP,ZNF596"
TCGA.AA.3966	8	164983	1992114	778	-0.5835	SMALL-LOSS	FOCAL	8	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,TDRP,ZNF596"
TCGA.CM.6675	8	164983	2130232	904	-1.1718	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3952	8	164983	2178595	926	-0.659	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AG.3594	8	164983	2178595	927	-0.6735	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AZ.6606	8	164983	2178595	927	-0.7292	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.D5.6926	8	164983	2178595	927	-0.5493	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.F5.6571	8	164983	2178595	927	-0.703	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3488	8	164983	2201384	927	-1.2731	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3494	8	164983	2201384	928	-1.2624	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3549	8	164983	2205101	929	-0.6908	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AZ.4681	8	164983	2205101	928	-0.8325	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.A6.5661	8	164983	2292213	937	-0.6656	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3984	8	164983	2356920	985	-0.7786	SMALL-LOSS	FOCAL	9	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.D5.5541	8	164983	3307013	1595	-0.871	SMALL-LOSS	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.AA.3543	8	164983	3584422	1875	-1.0841	SMALL-LOSS	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A1HA	8	164983	3776863	2094	-1.0429	SMALL-LOSS	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.5M.AAT4	8	164983	4730253	3027	-0.581	SMALL-LOSS	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A28G	8	164983	5594131	3747	-0.844	SMALL-LOSS	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.DM.A1D9	8	164983	5601351	3750	-0.7872	SMALL-LOSS	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.CM.6166	8	164983	5646185	3786	-0.7522	SMALL-LOSS	FOCAL	10	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP,ZNF596"
TCGA.A6.3808.01A	8	190805	385570	9	-1.0448	SMALL-LOSS	FOCAL	2	"FBXO25,ZNF596"
TCGA.AG.4009.01A	8	190805	444447	17	-0.5769	SMALL-LOSS	FOCAL	3	"FBXO25,TDRP,ZNF596"
TCGA.AG.A02X.01A	8	190805	1874489	57	-1.1405	SMALL-LOSS	FOCAL	7	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,TDRP,ZNF596"
TCGA.AG.3909.01A	8	363050	2050415	79	-0.9228	SMALL-LOSS	FOCAL	8	"ARHGEF10,CLN8,DLGAP2,ERICH1,FBXO25,KBTBD11,MYOM2,TDRP"
TCGA.A6.3808.01A	8	442347	1998834	55	-0.699	SMALL-LOSS	FOCAL	7	"ARHGEF10,CLN8,DLGAP2,ERICH1,KBTBD11,MYOM2,TDRP"
TCGA.CK.5914.01A	8	442347	2090221	85	-0.9173	SMALL-LOSS	FOCAL	7	"ARHGEF10,CLN8,DLGAP2,ERICH1,KBTBD11,MYOM2,TDRP"
TCGA.A6.5662	8	512892	563370	25	-1.1257	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5912	8	512892	2206485	772	-0.8868	SMALL-LOSS	FOCAL	6	"ARHGEF10,CLN8,DLGAP2,ERICH1,KBTBD11,MYOM2"
TCGA.AG.4009.01A	8	614542	1513812	7	-1.303	SMALL-LOSS	FOCAL	2	"DLGAP2,ERICH1"
TCGA.AA.3930.01A	8	618556	1791494	20	-0.844	SMALL-LOSS	FOCAL	4	"ARHGEF10,CLN8,DLGAP2,ERICH1"
TCGA.QG.A5Z2	8	1134510	1164481	25	-0.6133	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5868	8	1251973	2206485	473	-0.7402	SMALL-LOSS	FOCAL	5	"ARHGEF10,CLN8,DLGAP2,KBTBD11,MYOM2"
TCGA.A6.5662	8	1291214	4731718	2558	-1.1183	SMALL-LOSS	FOCAL	6	"ARHGEF10,CLN8,CSMD1,DLGAP2,KBTBD11,MYOM2"
TCGA.A6.6649	8	1460157	1461821	3	-0.9629	SMALL-LOSS	FOCAL	1	DLGAP2
TCGA.AA.3548	8	1619910	2205101	303	-0.6963	SMALL-LOSS	FOCAL	5	"ARHGEF10,CLN8,DLGAP2,KBTBD11,MYOM2"
TCGA.AA.A00N.01A	8	2048639	2057134	5	-0.8078	SMALL-LOSS	FOCAL	1	MYOM2
TCGA.AD.6890	8	2061005	2061437	4	-0.8224	SMALL-LOSS	FOCAL	1	MYOM2
TCGA.AA.3967.01A	8	2091255	4851797	71	-0.7852	SMALL-LOSS	FOCAL	2	"CSMD1,MYOM2"
TCGA.AA.3819	8	2166252	2220775	10	-0.6969	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3848	8	2201384	2220775	6	-0.851	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3966	8	2201384	3241473	627	-0.5686	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.AZ.4681	8	2220775	3562526	911	-0.9063	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.AA.3952	8	2220775	4283152	1763	-0.6875	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.F5.6571	8	2220775	5601351	2817	-0.6147	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.RU.A8FL	8	2247093	3996812	1418	-1.2874	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.A6.6653	8	2294905	2296932	5	-0.8169	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3848	8	2567830	2573750	5	-1.033	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3673	8	2589915	2590638	3	-1.2223	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	2755069	2769464	13	-0.6135	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5540	8	2854993	4143242	1258	-0.9274	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.AG.3611.01A	8	3141624	6301924	7	-0.6969	SMALL-LOSS	FOCAL	2	"CSMD1,MCPH1"
TCGA.CK.5913	8	3169350	3169685	3	-0.987	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.AA.3558	8	3393401	3394132	4	-0.6993	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.AZ.4681	8	3563508	3921820	411	-0.8966	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.EI.7004	8	3663470	5077134	1339	-0.9547	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.EI.6506	8	3776863	3789920	6	-1.2357	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.DM.A1D4	8	3787059	3791217	5	-1.0564	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.G4.6626	8	4503346	4504716	3	-1.2181	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.AA.3673	8	4660203	4661911	3	-0.9884	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.DM.A1HB	8	4669112	4676577	15	-0.7518	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.AG.3592	8	4786135	5064448	222	-1.2918	SMALL-LOSS	FOCAL	1	CSMD1
TCGA.EI.6506	8	5553030	5553099	3	-1.2648	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6931	8	5601684	5604494	4	-1.2349	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28K	8	5601684	5604494	3	-1.1601	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5540	8	6632565	6825283	166	-0.8321	SMALL-LOSS	FOCAL	4	"DEFA4,DEFA6,DEFB1,XKR5"
TCGA.AA.A00F.01A	8	6735268	6914001	7	-0.8263	SMALL-LOSS	FOCAL	7	"DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1"
TCGA.AG.4009.01A	8	7718107	8747934	14	-1.0136	SMALL-LOSS	FOCAL	10	"CLDN23,DEFB103A,DEFB103B,DEFB4A,MFHAS1,SGK223,SPAG11A,USP17L3,USP17L8,ZNF705B"
TCGA.AA.3680	8	8092024	8969432	505	-1.263	SMALL-LOSS	FOCAL	4	"CLDN23,ERI1,MFHAS1,SGK223"
TCGA.AM.5820	8	8094762	10117955	1094	-0.7656	SMALL-LOSS	FOCAL	7	"CLDN23,ERI1,MFHAS1,MSRA,PPP1R3B,SGK223,TNKS"
TCGA.AA.A00N.01A	8	8238896	9538176	20	-0.6454	SMALL-LOSS	FOCAL	6	"CLDN23,ERI1,MFHAS1,PPP1R3B,SGK223,TNKS"
TCGA.AD.6888	8	8616473	9879450	652	-0.8349	SMALL-LOSS	FOCAL	4	"ERI1,MFHAS1,PPP1R3B,TNKS"
TCGA.AG.4009.01A	8	8749739	9609097	27	-0.7343	SMALL-LOSS	FOCAL	4	"ERI1,MFHAS1,PPP1R3B,TNKS"
TCGA.A6.6653	8	9060076	9062489	4	-0.7303	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	8	9521120	9571444	12	-0.9948	SMALL-LOSS	FOCAL	1	TNKS
TCGA.AD.6888	8	9940480	10594842	390	-0.9325	SMALL-LOSS	FOCAL	5	"C8orf74,MSRA,PRSS55,RP1L1,SOX7"
TCGA.AM.5820	8	10131458	10200885	40	-0.7124	SMALL-LOSS	FOCAL	1	MSRA
TCGA.AA.3518	8	10162527	10164575	3	-1.16	SMALL-LOSS	FOCAL	1	MSRA
TCGA.AM.5820	8	10834651	10870604	17	-0.5266	SMALL-LOSS	FOCAL	1	XKR6
TCGA.AA.A010.01A	8	10859858	11180087	13	-1.2102	SMALL-LOSS	FOCAL	2	"MTMR9,XKR6"
TCGA.AA.3522	8	11036798	11037902	4	-0.594	SMALL-LOSS	FOCAL	1	XKR6
TCGA.AD.6888	8	11218892	11728993	256	-0.9192	SMALL-LOSS	FOCAL	6	"BLK,CTSB,FAM167A,FDFT1,GATA4,NEIL2"
TCGA.AA.A010.01A	8	11628940	11695870	12	-0.9505	SMALL-LOSS	FOCAL	2	"FDFT1,NEIL2"
TCGA.EI.6883	8	12695531	15774294	1656	-0.6807	SMALL-LOSS	FOCAL	5	"C8orf48,DLC1,KIAA1456,SGCZ,TUSC3"
TCGA.AA.3844	8	12717075	12732753	19	-0.6117	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	12943302	12973034	13	-0.855	SMALL-LOSS	FOCAL	1	DLC1
TCGA.EI.6885	8	13200642	13799291	368	-0.7495	SMALL-LOSS	FOCAL	2	"C8orf48,DLC1"
TCGA.AA.3982	8	13244223	16426032	1634	-0.9275	SMALL-LOSS	FOCAL	5	"C8orf48,DLC1,MSR1,SGCZ,TUSC3"
TCGA.AD.A5EK	8	13599453	13603475	3	-0.9933	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6885	8	13801020	14293502	250	-0.7154	SMALL-LOSS	FOCAL	1	SGCZ
TCGA.AA.3517	8	14538995	14836784	117	-0.8842	SMALL-LOSS	FOCAL	1	SGCZ
TCGA.G4.6322	8	14580230	14974051	176	-0.8382	SMALL-LOSS	FOCAL	1	SGCZ
TCGA.DC.5337	8	15406305	15411607	4	-1.173	SMALL-LOSS	FOCAL	1	TUSC3
TCGA.DM.A1D4	8	15406305	15411607	4	-1.0419	SMALL-LOSS	FOCAL	1	TUSC3
TCGA.DY.A1DF	8	15406305	15411607	4	-0.5465	SMALL-LOSS	FOCAL	1	TUSC3
TCGA.AD.A5EK	8	15942310	15944306	5	-0.9884	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6885	8	16270466	17048959	341	-0.7202	SMALL-LOSS	FOCAL	3	"FGF20,MICU3,ZDHHC2"
TCGA.AA.3875	8	16360618	16364931	7	-0.7582	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	8	16486530	16534196	28	-0.599	SMALL-LOSS	FOCAL	0	None
TCGA.CA.6715	8	17915340	18333989	212	-0.7543	SMALL-LOSS	FOCAL	3	"ASAH1,NAT1,NAT2"
TCGA.AA.3941	8	18030949	18036804	5	-1.222	SMALL-LOSS	FOCAL	1	NAT1
TCGA.AA.3941	8	18256658	18262545	8	-0.6139	SMALL-LOSS	FOCAL	1	NAT2
TCGA.AA.3811	8	18257993	18260012	4	-1.3202	SMALL-LOSS	FOCAL	1	NAT2
TCGA.AA.3941	8	18482595	18492826	7	-0.6716	SMALL-LOSS	FOCAL	1	PSD3
TCGA.CK.5914.01A	8	19675719	19687880	9	-0.857	SMALL-LOSS	FOCAL	1	INTS10
TCGA.AG.3909.01A	8	19690633	19822731	16	-0.6493	SMALL-LOSS	FOCAL	2	"INTS10,LPL"
TCGA.AA.A00N.01A	8	19805644	19818360	7	-0.9218	SMALL-LOSS	FOCAL	1	LPL
TCGA.AG.4009.01A	8	20036580	20077722	14	-1.0094	SMALL-LOSS	FOCAL	2	"ATP6V1B2,SLC18A1"
TCGA.AA.A00N.01A	8	20061922	20077722	12	-1.2645	SMALL-LOSS	FOCAL	1	ATP6V1B2
TCGA.AZ.6601	8	21699476	21706866	6	-0.9693	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	21766783	21823717	7	-0.8133	SMALL-LOSS	FOCAL	2	"DOK2,XPO7"
TCGA.AA.A00N.01A	8	21890591	22037844	74	-0.7008	SMALL-LOSS	FOCAL	10	"BMP1,DMTN,FAM160B2,FGF17,HR,LGI3,NPM2,NUDT18,REEP4,SFTPC"
TCGA.AF.3914.01A	8	21891568	21924309	8	-1.1585	SMALL-LOSS	FOCAL	3	"DMTN,FGF17,NPM2"
TCGA.AA.A01Q.01A	8	21891568	21937916	17	-0.5577	SMALL-LOSS	FOCAL	3	"DMTN,FGF17,NPM2"
TCGA.AF.3914.01A	8	21929800	22037844	55	-1.0943	SMALL-LOSS	FOCAL	8	"BMP1,DMTN,FAM160B2,HR,LGI3,NUDT18,REEP4,SFTPC"
TCGA.AA.A010.01A	8	21965179	21996880	19	-1.1956	SMALL-LOSS	FOCAL	3	"HR,NUDT18,REEP4"
TCGA.AA.A01Q.01A	8	21973145	22037844	36	-1.0295	SMALL-LOSS	FOCAL	5	"BMP1,HR,LGI3,REEP4,SFTPC"
TCGA.AG.3909.01A	8	21984503	22102931	44	-0.7302	SMALL-LOSS	FOCAL	7	"BMP1,HR,LGI3,PHYHIP,POLR3D,REEP4,SFTPC"
TCGA.AA.A00N.01A	8	22104654	22147694	14	-1.1167	SMALL-LOSS	FOCAL	2	"PIWIL2,POLR3D"
TCGA.AA.A00N.01A	8	22379971	22475813	48	-0.9543	SMALL-LOSS	FOCAL	5	"C8orf58,CCAR2,PDLIM2,PPP3CC,SORBS3"
TCGA.AA.A010.01A	8	22379971	22785068	67	-0.6108	SMALL-LOSS	FOCAL	8	"BIN3,C8orf58,CCAR2,EGR3,PDLIM2,PEBP4,PPP3CC,SORBS3"
TCGA.AG.4009.01A	8	22396910	22463543	26	-1.259	SMALL-LOSS	FOCAL	5	"C8orf58,CCAR2,PDLIM2,PPP3CC,SORBS3"
TCGA.CK.5914.01A	8	22396910	22487905	48	-0.6138	SMALL-LOSS	FOCAL	6	"BIN3,C8orf58,CCAR2,PDLIM2,PPP3CC,SORBS3"
TCGA.AA.A01Q.01A	8	22415573	22442292	16	-0.6909	SMALL-LOSS	FOCAL	2	"PDLIM2,SORBS3"
TCGA.AF.3914.01A	8	22421752	22884618	57	-0.8719	SMALL-LOSS	FOCAL	9	"BIN3,C8orf58,CCAR2,EGR3,PDLIM2,PEBP4,RHOBTB2,SORBS3,TNFRSF10B"
TCGA.AA.3930.01A	8	22429202	22460013	14	-1.0241	SMALL-LOSS	FOCAL	3	"C8orf58,PDLIM2,SORBS3"
TCGA.AG.4009.01A	8	22464065	22861898	26	-0.5165	SMALL-LOSS	FOCAL	5	"BIN3,CCAR2,EGR3,PEBP4,RHOBTB2"
TCGA.AA.3819	8	22471823	22472949	3	-0.8813	SMALL-LOSS	FOCAL	1	CCAR2
TCGA.AA.A00L.01A	8	22547955	22868033	10	-1.0923	SMALL-LOSS	FOCAL	3	"EGR3,PEBP4,RHOBTB2"
TCGA.AA.A01Q.01A	8	22547955	22884618	16	-0.6582	SMALL-LOSS	FOCAL	4	"EGR3,PEBP4,RHOBTB2,TNFRSF10B"
TCGA.AG.4009.01A	8	22862843	22872160	7	-1.1846	SMALL-LOSS	FOCAL	1	RHOBTB2
TCGA.AA.A010.01A	8	22873099	22881639	4	-0.9124	SMALL-LOSS	FOCAL	2	"RHOBTB2,TNFRSF10B"
TCGA.AG.4009.01A	8	22873099	22900599	10	-0.6591	SMALL-LOSS	FOCAL	2	"RHOBTB2,TNFRSF10B"
TCGA.AA.A00N.01A	8	23106675	23156297	16	-1.0857	SMALL-LOSS	FOCAL	3	"CHMP7,LOXL2,R3HCC1"
TCGA.CK.5914.01A	8	23106675	23160758	18	-0.8563	SMALL-LOSS	FOCAL	3	"CHMP7,LOXL2,R3HCC1"
TCGA.CK.5914.01A	8	23291782	23307313	11	-1.1255	SMALL-LOSS	FOCAL	1	ENTPD4
TCGA.AG.4009.01A	8	23291782	23538717	15	-0.9427	SMALL-LOSS	FOCAL	3	"ENTPD4,NKX3-1,SLC25A37"
TCGA.AA.3844	8	23468923	23472741	8	-0.8816	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3972	8	23469613	23472741	5	-0.6565	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	23540090	23711882	6	-0.5806	SMALL-LOSS	FOCAL	3	"NKX2-6,NKX3-1,STC1"
TCGA.AA.3982	8	23695902	24460017	248	-1.134	SMALL-LOSS	FOCAL	4	"ADAM28,ADAM7,ADAMDEC1,STC1"
TCGA.AG.4009.01A	8	23702291	24365972	64	-0.5436	SMALL-LOSS	FOCAL	4	"ADAM28,ADAM7,ADAMDEC1,STC1"
TCGA.AA.3850	8	23900893	24709966	289	-0.59425	SMALL-LOSS	FOCAL	3	"ADAM28,ADAM7,ADAMDEC1"
TCGA.AA.A00F.01A	8	24151588	24771290	61	-0.7872	SMALL-LOSS	FOCAL	4	"ADAM28,ADAM7,ADAMDEC1,NEFM"
TCGA.CK.5914.01A	8	24365972	24812989	9	-0.7347	SMALL-LOSS	FOCAL	3	"ADAM7,NEFL,NEFM"
TCGA.EI.6885	8	24381374	25400987	416	-0.7179	SMALL-LOSS	FOCAL	6	"CDCA2,DOCK5,GNRH1,KCTD9,NEFL,NEFM"
TCGA.AG.4009.01A	8	24810273	25132857	7	-0.6954	SMALL-LOSS	FOCAL	2	"DOCK5,NEFL"
TCGA.AG.4009.01A	8	25159814	25189716	9	-0.6062	SMALL-LOSS	FOCAL	1	DOCK5
TCGA.AG.4009.01A	8	25237769	25290798	20	-0.5409	SMALL-LOSS	FOCAL	3	"DOCK5,GNRH1,KCTD9"
TCGA.AG.3909.01A	8	25289969	25327355	15	-0.9023	SMALL-LOSS	FOCAL	2	"CDCA2,KCTD9"
TCGA.AG.4009.01A	8	25292832	25340860	14	-1.0907	SMALL-LOSS	FOCAL	2	"CDCA2,KCTD9"
TCGA.CK.5914.01A	8	25293702	25327355	12	-0.5988	SMALL-LOSS	FOCAL	2	"CDCA2,KCTD9"
TCGA.AA.A00N.01A	8	25301768	25327355	8	-1.2721	SMALL-LOSS	FOCAL	2	"CDCA2,KCTD9"
TCGA.AA.A010.01A	8	25323640	25341460	6	-0.8803	SMALL-LOSS	FOCAL	1	CDCA2
TCGA.AG.4009.01A	8	25341460	25765942	15	-0.5445	SMALL-LOSS	FOCAL	2	"CDCA2,EBF2"
TCGA.AA.3850	8	25598597	25640192	21	-0.90385	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	25890549	26441268	23	-1.2283	SMALL-LOSS	FOCAL	5	"BNIP3L,DPYSL2,EBF2,PNMA2,PPP2R2A"
TCGA.AG.4009.01A	8	25890549	26441268	24	-1.0707	SMALL-LOSS	FOCAL	5	"BNIP3L,DPYSL2,EBF2,PNMA2,PPP2R2A"
TCGA.AA.A00N.01A	8	25890549	26484672	29	-0.7507	SMALL-LOSS	FOCAL	5	"BNIP3L,DPYSL2,EBF2,PNMA2,PPP2R2A"
TCGA.AZ.6599	8	26015110	26023491	7	-0.5179	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6322	8	26032239	26591512	233	-0.8553	SMALL-LOSS	FOCAL	4	"BNIP3L,DPYSL2,PNMA2,PPP2R2A"
TCGA.AA.A010.01A	8	26217634	26441268	16	-0.8087	SMALL-LOSS	FOCAL	4	"BNIP3L,DPYSL2,PNMA2,PPP2R2A"
TCGA.AA.A01Q.01A	8	26435704	26484672	6	-0.8163	SMALL-LOSS	FOCAL	1	DPYSL2
TCGA.CK.4952.01A	8	27150211	27746474	106	-0.6868	SMALL-LOSS	FOCAL	10	"CCDC25,CHRNA2,CLU,EPHX2,ESCO2,PBK,PTK2B,SCARA3,SCARA5,TRIM35"
TCGA.AG.A00C.01A	8	27255071	27300385	20	-0.5444	SMALL-LOSS	FOCAL	1	PTK2B
TCGA.AG.3909.01A	8	27328448	27364360	5	-0.8456	SMALL-LOSS	FOCAL	2	"CHRNA2,EPHX2"
TCGA.AG.3909.01A	8	27455686	27622644	23	-0.6622	SMALL-LOSS	FOCAL	3	"CCDC25,CLU,SCARA3"
TCGA.CK.5914.01A	8	27632958	27690555	17	-0.7505	SMALL-LOSS	FOCAL	2	"ESCO2,PBK"
TCGA.AG.3909.01A	8	27646312	27690555	12	-0.9582	SMALL-LOSS	FOCAL	2	"ESCO2,PBK"
TCGA.AA.3941	8	27668514	27673403	6	-0.617	SMALL-LOSS	FOCAL	1	PBK
TCGA.G4.6322	8	28042109	28535637	190	-0.8671	SMALL-LOSS	FOCAL	5	"ELP3,FBXO16,FZD3,PNOC,ZNF395"
TCGA.AA.A00N.01A	8	28286159	28360499	9	-0.6223	SMALL-LOSS	FOCAL	2	"FBXO16,FZD3"
TCGA.D5.6533	8	28412462	28655930	76	-0.6	SMALL-LOSS	FOCAL	3	"EXTL3,FZD3,INTS9"
TCGA.AA.A010.01A	8	28902823	28956601	9	-0.8294	SMALL-LOSS	FOCAL	2	"HMBOX1,KIF13B"
TCGA.AA.A00N.01A	8	29195762	29963223	14	-0.9072	SMALL-LOSS	FOCAL	3	"DUSP4,LEPROTL1,SARAF"
TCGA.AG.3909.01A	8	29195762	29963223	12	-1.079	SMALL-LOSS	FOCAL	3	"DUSP4,LEPROTL1,SARAF"
TCGA.AG.4009.01A	8	29202840	29963223	10	-1.1018	SMALL-LOSS	FOCAL	3	"DUSP4,LEPROTL1,SARAF"
TCGA.D5.6930	8	29305350	29311317	4	-0.8684	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A0XA	8	29622277	30149899	171	-0.6807	SMALL-LOSS	FOCAL	4	"DCTN6,LEPROTL1,MBOAT4,SARAF"
TCGA.AA.3509.01A	8	29952947	30648666	54	-1.1561	SMALL-LOSS	FOCAL	9	"DCTN6,GSR,GTF2E2,LEPROTL1,MBOAT4,PPP2CB,RBPMS,SMIM18,UBXN8"
TCGA.AG.4009.01A	8	30013813	30973843	72	-0.5395	SMALL-LOSS	FOCAL	10	"DCTN6,GSR,GTF2E2,PPP2CB,PURG,RBPMS,SMIM18,TEX15,UBXN8,WRN"
TCGA.AZ.4684.01A	8	30034590	30618325	39	-0.7487	SMALL-LOSS	FOCAL	6	"DCTN6,GSR,GTF2E2,RBPMS,SMIM18,UBXN8"
TCGA.AA.A010.01A	8	30648666	30922379	17	-0.8326	SMALL-LOSS	FOCAL	4	"PPP2CB,PURG,TEX15,WRN"
TCGA.AA.3870	8	30835042	36924536	1729	-0.6267	SMALL-LOSS	FOCAL	10	"DUSP26,FUT10,KCNU1,MAK16,NRG1,PURG,RNF122,TTI2,UNC5D,WRN"
TCGA.AA.3509.01A	8	30989834	36788460	100	-0.657	SMALL-LOSS	FOCAL	9	"DUSP26,FUT10,KCNU1,MAK16,NRG1,RNF122,TTI2,UNC5D,WRN"
TCGA.AA.3982	8	31140869	31811940	225	-0.9641	SMALL-LOSS	FOCAL	1	NRG1
TCGA.G4.6322	8	31248540	34567091	1097	-0.8133	SMALL-LOSS	FOCAL	6	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2"
TCGA.EI.6511	8	31311782	35004234	1190	-0.5519	SMALL-LOSS	FOCAL	6	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2"
TCGA.AA.3850	8	31358334	32132881	305	-0.62165	SMALL-LOSS	FOCAL	1	NRG1
TCGA.AZ.5403	8	31630450	33993831	795	-0.5447	SMALL-LOSS	FOCAL	6	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2"
TCGA.D5.6923	8	31671413	32642080	463	-0.5712	SMALL-LOSS	FOCAL	1	NRG1
TCGA.AA.3941	8	31976836	31992036	12	-1.0699	SMALL-LOSS	FOCAL	1	NRG1
TCGA.DY.A0XA	8	32432368	35140015	729	-0.7676	SMALL-LOSS	FOCAL	7	"DUSP26,FUT10,MAK16,NRG1,RNF122,TTI2,UNC5D"
TCGA.AA.3941	8	32519331	32522625	5	-1.2884	SMALL-LOSS	FOCAL	1	NRG1
TCGA.AA.3941	8	32537907	32540035	4	-0.8577	SMALL-LOSS	FOCAL	1	NRG1
TCGA.AA.3982	8	32908690	37256044	1089	-0.5158	SMALL-LOSS	FOCAL	7	"DUSP26,FUT10,KCNU1,MAK16,RNF122,TTI2,UNC5D"
TCGA.AG.4009.01A	8	33230056	33318854	4	-0.6008	SMALL-LOSS	FOCAL	1	FUT10
TCGA.CK.5914.01A	8	33345834	33360900	10	-1.0217	SMALL-LOSS	FOCAL	2	"MAK16,TTI2"
TCGA.AG.3909.01A	8	33406220	35401936	9	-0.6274	SMALL-LOSS	FOCAL	3	"DUSP26,RNF122,UNC5D"
TCGA.EI.6885	8	33455299	34720800	325	-0.8399	SMALL-LOSS	FOCAL	1	DUSP26
TCGA.CM.5860	8	33532125	33727044	46	-0.8802	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5860	8	33923459	34568014	205	-0.9293	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2677	8	34001155	34985790	268	-0.8126	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6172	8	34249850	36059319	424	-0.7052	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.F5.6813	8	34515760	34694419	53	-0.6292	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A285	8	34537875	35311192	191	-0.5918	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.CM.5860	8	34611274	34985790	111	-0.9319	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AATA	8	34618818	35020546	119	-0.7447	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6169	8	35399418	35971840	115	-0.5473	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.AA.A00F.01A	8	35401936	35647840	17	-0.8964	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.DY.A0XA	8	35479109	35615145	43	-0.865	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.DM.A285	8	35495648	35944474	76	-0.7857	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.CA.5797	8	35558645	36284288	114	-1.0835	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.AA.A00D.01A	8	35579676	35647840	9	-0.7321	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.AA.A01S	8	35633285	35922433	25	-1.08275	SMALL-LOSS	FOCAL	1	UNC5D
TCGA.EI.6885	8	35784315	36340756	78	-0.8114	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6923	8	35916717	36138135	36	-0.5882	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A0XA	8	36013636	36823657	148	-0.8355	SMALL-LOSS	FOCAL	1	KCNU1
TCGA.CM.6169	8	36210268	37217379	285	-0.5311	SMALL-LOSS	FOCAL	1	KCNU1
TCGA.CL.5917	8	36391229	36754129	64	-0.6766	SMALL-LOSS	FOCAL	1	KCNU1
TCGA.CM.6676	8	36692799	36695384	3	-0.9072	SMALL-LOSS	FOCAL	1	KCNU1
TCGA.AA.3549	8	36775357	36992796	77	-0.6699	SMALL-LOSS	FOCAL	1	KCNU1
TCGA.A6.2677	8	36775474	37834311	279	-0.8712	SMALL-LOSS	FOCAL	9	"ADGRA2,ADRB3,BRF2,ERLIN2,GOT1L1,KCNU1,PROSC,RAB11FIP1,ZNF703"
TCGA.AA.3952	8	36907467	37758537	246	-0.6033	SMALL-LOSS	FOCAL	6	"ADGRA2,BRF2,ERLIN2,PROSC,RAB11FIP1,ZNF703"
TCGA.AA.3496	8	36941541	36948616	6	-0.7574	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	37554636	37993136	73	-0.6328	SMALL-LOSS	FOCAL	10	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,PROSC,RAB11FIP1,ZNF703"
TCGA.CM.6172	8	37610505	37981259	22	-0.7452	SMALL-LOSS	FOCAL	9	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,PROSC,RAB11FIP1"
TCGA.A6.2681	8	37645465	37758537	11	-0.5306	SMALL-LOSS	FOCAL	3	"ADGRA2,BRF2,RAB11FIP1"
TCGA.AA.A00F.01A	8	37707111	37963017	12	-0.6559	SMALL-LOSS	FOCAL	6	"ADRB3,ASH2L,BRF2,EIF4EBP1,GOT1L1,RAB11FIP1"
TCGA.D5.6923	8	37971941	38043757	18	-0.6308	SMALL-LOSS	FOCAL	4	"ASH2L,BAG4,LSM1,STAR"
TCGA.AA.A00F.01A	8	37976738	38008208	13	-0.6885	SMALL-LOSS	FOCAL	2	"ASH2L,STAR"
TCGA.AA.A00N.01A	8	38021157	38067504	9	-0.5592	SMALL-LOSS	FOCAL	2	"BAG4,LSM1"
TCGA.AA.A010.01A	8	38066531	38122363	19	-0.6196	SMALL-LOSS	FOCAL	3	"BAG4,DDHD2,PPAPDC1B"
TCGA.AA.A00N.01A	8	38090501	38147975	30	-1.2889	SMALL-LOSS	FOCAL	3	"DDHD2,PPAPDC1B,WHSC1L1"
TCGA.A6.5656	8	38105996	38133792	5	-0.9432	SMALL-LOSS	FOCAL	3	"DDHD2,PPAPDC1B,WHSC1L1"
TCGA.AG.3909.01A	8	38138983	38162744	8	-0.5397	SMALL-LOSS	FOCAL	1	WHSC1L1
TCGA.AA.A00N.01A	8	38250117	38265672	8	-1.0471	SMALL-LOSS	FOCAL	1	LETM2
TCGA.F5.6864	8	38317397	38888950	140	-0.5788	SMALL-LOSS	FOCAL	7	"ADAM9,C8orf86,FGFR1,HTRA4,PLEKHA2,TACC1,TM2D2"
TCGA.CM.4752	8	38385388	38387390	3	-1.3104	SMALL-LOSS	FOCAL	1	C8orf86
TCGA.A6.6653	8	38385388	38429371	18	-0.6262	SMALL-LOSS	FOCAL	1	C8orf86
TCGA.AA.3685	8	38407125	38979867	128	-0.7654	SMALL-LOSS	FOCAL	6	"ADAM32,ADAM9,HTRA4,PLEKHA2,TACC1,TM2D2"
TCGA.AA.A02K.01A	8	38645055	38826063	23	-0.7409	SMALL-LOSS	FOCAL	2	"PLEKHA2,TACC1"
TCGA.AA.A00N.01A	8	38810751	38832509	6	-0.9217	SMALL-LOSS	FOCAL	2	"HTRA4,PLEKHA2"
TCGA.EI.6885	8	38821664	40167695	342	-0.7717	SMALL-LOSS	FOCAL	10	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,HTRA4,IDO1,IDO2,PLEKHA2,TM2D2"
TCGA.AG.4009.01A	8	38826050	38853720	15	-0.6585	SMALL-LOSS	FOCAL	3	"HTRA4,PLEKHA2,TM2D2"
TCGA.AG.3909.01A	8	38832509	38865355	13	-1.2994	SMALL-LOSS	FOCAL	3	"ADAM9,HTRA4,TM2D2"
TCGA.AA.A01Q.01A	8	38834066	38845426	7	-0.5655	SMALL-LOSS	FOCAL	1	HTRA4
TCGA.AG.A01N.01A	8	38834066	38854555	12	-1.172	SMALL-LOSS	FOCAL	3	"ADAM9,HTRA4,TM2D2"
TCGA.AA.A00N.01A	8	38853720	38874688	7	-0.9893	SMALL-LOSS	FOCAL	2	"ADAM9,TM2D2"
TCGA.CK.5914.01A	8	38853720	38884155	12	-0.5728	SMALL-LOSS	FOCAL	2	"ADAM9,TM2D2"
TCGA.AA.A02K.01A	8	38871425	39468022	59	-0.7397	SMALL-LOSS	FOCAL	3	"ADAM18,ADAM32,ADAM9"
TCGA.AA.A01S	8	38955567	40181977	335	-0.93625	SMALL-LOSS	FOCAL	7	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,IDO1,IDO2"
TCGA.AA.A00N.01A	8	39022238	39044378	4	-1.2166	SMALL-LOSS	FOCAL	1	ADAM32
TCGA.F5.6864	8	39131689	39136230	4	-0.5188	SMALL-LOSS	FOCAL	1	ADAM32
TCGA.EI.6513	8	39397014	39528211	30	-0.6808	SMALL-LOSS	FOCAL	1	ADAM18
TCGA.DC.6155	8	39397014	41234888	686	-0.9175	SMALL-LOSS	FOCAL	7	"ADAM18,ADAM2,C8orf4,IDO1,IDO2,SFRP1,ZMAT4"
TCGA.G4.6299	8	39647651	40698362	470	-1.2915	SMALL-LOSS	FOCAL	5	"ADAM2,C8orf4,IDO1,IDO2,ZMAT4"
TCGA.AG.A023.01A	8	39682281	41399284	42	-0.6581	SMALL-LOSS	FOCAL	8	"ADAM2,C8orf4,GINS4,GOLGA7,IDO1,IDO2,SFRP1,ZMAT4"
TCGA.AF.2693	8	39830956	39831646	3	-0.6796	SMALL-LOSS	FOCAL	1	IDO2
TCGA.EI.6883	8	39830956	39831646	3	-0.6162	SMALL-LOSS	FOCAL	1	IDO2
TCGA.AA.3685	8	39992688	41165793	484	-0.782	SMALL-LOSS	FOCAL	3	"C8orf4,SFRP1,ZMAT4"
TCGA.AA.3941	8	40091712	40107560	9	-0.7349	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5349	8	40099746	40100569	2	-0.6993	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AATA	8	40184871	40186929	3	-1.1826	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6533	8	40184871	40186929	3	-1.2323	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	8	40192909	40281396	49	-0.95535	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	40283308	40311663	9	-0.5284	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6533	8	40836375	40861305	10	-1.0187	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	8	41122700	41615537	67	-0.5383	SMALL-LOSS	FOCAL	6	"AGPAT6,ANK1,GINS4,GOLGA7,NKX6-3,SFRP1"
TCGA.CK.5914.01A	8	41122700	41615537	68	-0.6082	SMALL-LOSS	FOCAL	6	"AGPAT6,ANK1,GINS4,GOLGA7,NKX6-3,SFRP1"
TCGA.AA.A00N.01A	8	41160921	41806688	77	-0.6495	SMALL-LOSS	FOCAL	7	"AGPAT6,ANK1,GINS4,GOLGA7,KAT6A,NKX6-3,SFRP1"
TCGA.CA.5797	8	41294425	41772389	168	-0.9016	SMALL-LOSS	FOCAL	5	"AGPAT6,ANK1,GINS4,GOLGA7,NKX6-3"
TCGA.AG.3909.01A	8	41355001	41801268	67	-0.5589	SMALL-LOSS	FOCAL	6	"AGPAT6,ANK1,GINS4,GOLGA7,KAT6A,NKX6-3"
TCGA.AG.4009.01A	8	41397158	41513170	14	-0.5702	SMALL-LOSS	FOCAL	4	"AGPAT6,ANK1,GINS4,NKX6-3"
TCGA.AA.A01S	8	41437021	41558897	45	-1.03985	SMALL-LOSS	FOCAL	3	"AGPAT6,ANK1,NKX6-3"
TCGA.AA.A02E.01A	8	41561527	41577160	9	-0.7628	SMALL-LOSS	FOCAL	1	ANK1
TCGA.CK.5914.01A	8	41905845	42026442	9	-1.0048	SMALL-LOSS	FOCAL	2	"AP3M2,KAT6A"
TCGA.AA.A010.01A	8	41905845	42036367	11	-0.6339	SMALL-LOSS	FOCAL	3	"AP3M2,KAT6A,PLAT"
TCGA.AG.3909.01A	8	42012207	42026442	8	-0.6867	SMALL-LOSS	FOCAL	1	AP3M2
TCGA.CK.5914.01A	8	42175133	42234404	26	-0.5343	SMALL-LOSS	FOCAL	3	"DKK4,IKBKB,POLB"
TCGA.AG.3909.01A	8	42186621	42202423	5	-0.7846	SMALL-LOSS	FOCAL	2	"IKBKB,POLB"
TCGA.DY.A0XA	8	42224154	42259196	8	-0.7539	SMALL-LOSS	FOCAL	3	"DKK4,POLB,VDAC3"
TCGA.AA.A01Q.01A	8	42251677	42262848	8	-0.6569	SMALL-LOSS	FOCAL	1	VDAC3
TCGA.AG.3909.01A	8	42251677	42262848	8	-1.1995	SMALL-LOSS	FOCAL	1	VDAC3
TCGA.A6.3808.01A	8	42252587	42862934	60	-0.5451	SMALL-LOSS	FOCAL	8	"CHRNA6,CHRNB3,HOOK3,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.DY.A0XA	8	42330369	42354256	4	-0.8975	SMALL-LOSS	FOCAL	1	SLC20A2
TCGA.CA.5797	8	42592302	42951983	31	-0.9601	SMALL-LOSS	FOCAL	6	"CHRNA6,FNTA,HOOK3,POMK,RNF170,THAP1"
TCGA.AA.A00L.01A	8	42693134	42698106	3	-0.6374	SMALL-LOSS	FOCAL	1	THAP1
TCGA.AG.4009.01A	8	42693134	42805477	14	-0.839	SMALL-LOSS	FOCAL	3	"HOOK3,RNF170,THAP1"
TCGA.AG.3909.01A	8	42780640	42798405	3	-1.2679	SMALL-LOSS	FOCAL	1	HOOK3
TCGA.AG.4009.01A	8	42873489	43147576	28	-0.76	SMALL-LOSS	FOCAL	4	"FNTA,HGSNAT,HOOK3,POMK"
TCGA.A6.3808.01A	8	42911453	49643860	153	-0.5739	SMALL-LOSS	FOCAL	10	"CEBPD,EFCAB1,FNTA,HGSNAT,MCM4,POMK,POTEA,PRKDC,SPIDR,UBE2V2"
TCGA.AG.3909.01A	8	42914181	42958650	9	-0.7601	SMALL-LOSS	FOCAL	2	"FNTA,POMK"
TCGA.AA.A010.01A	8	42914181	42977239	10	-1.172	SMALL-LOSS	FOCAL	2	"FNTA,POMK"
TCGA.AA.A010.01A	8	43024254	43054490	12	-1.1819	SMALL-LOSS	FOCAL	1	HGSNAT
TCGA.AG.3909.01A	8	43033179	43159836	13	-0.796	SMALL-LOSS	FOCAL	2	"HGSNAT,POTEA"
TCGA.EI.6513	8	43078866	51180632	774	-0.8099	SMALL-LOSS	FOCAL	10	"C8orf22,CEBPD,EFCAB1,MCM4,POTEA,PRKDC,SNAI2,SNTG1,SPIDR,UBE2V2"
TCGA.AF.3913	8	43150373	43778913	39	-0.5735	SMALL-LOSS	FOCAL	1	POTEA
TCGA.CA.5797	8	43150373	43778913	39	-1.0215	SMALL-LOSS	FOCAL	1	POTEA
TCGA.AG.3890	8	43265149	43662755	25	-0.8999	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4021	8	43300830	43679529	26	-0.6162	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GA	8	43387473	43778913	22	-0.6955	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	8	43455242	43762680	14	-0.6459	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3488	8	43657437	43662755	2	-1.2149	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2677	8	46924210	48300779	145	-1.1713	SMALL-LOSS	FOCAL	1	SPIDR
TCGA.AA.3544	8	46924210	49623095	332	-0.7643	SMALL-LOSS	FOCAL	5	"CEBPD,MCM4,PRKDC,SPIDR,UBE2V2"
TCGA.F5.6813	8	46924210	51883406	892	-0.5503	SMALL-LOSS	FOCAL	9	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,SNAI2,SNTG1,SPIDR,UBE2V2"
TCGA.CM.6675	8	46936839	49329000	253	-1.0574	SMALL-LOSS	FOCAL	5	"CEBPD,MCM4,PRKDC,SPIDR,UBE2V2"
TCGA.AA.3867	8	47354617	47385091	3	-0.6283	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	47384962	47799942	66	-0.71635	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	47384962	47799942	66	-0.7075	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	48625176	48647849	6	-0.751	SMALL-LOSS	FOCAL	1	SPIDR
TCGA.CM.6172	8	48642877	52506691	918	-0.7115	SMALL-LOSS	FOCAL	10	"C8orf22,CEBPD,EFCAB1,MCM4,PRKDC,PXDNL,SNAI2,SNTG1,SPIDR,UBE2V2"
TCGA.CK.5914.01A	8	48647849	48752540	32	-0.6401	SMALL-LOSS	FOCAL	3	"CEBPD,PRKDC,SPIDR"
TCGA.AA.A00N.01A	8	48729982	48752540	14	-0.974	SMALL-LOSS	FOCAL	1	PRKDC
TCGA.AG.3909.01A	8	48729982	48752540	14	-1.1945	SMALL-LOSS	FOCAL	1	PRKDC
TCGA.AA.3967.01A	8	48736378	48812884	35	-0.7493	SMALL-LOSS	FOCAL	1	PRKDC
TCGA.EI.6508	8	48741569	48945619	22	-0.8777	SMALL-LOSS	FOCAL	3	"MCM4,PRKDC,UBE2V2"
TCGA.CK.5914.01A	8	48848864	51306722	38	-0.6997	SMALL-LOSS	FOCAL	7	"C8orf22,EFCAB1,MCM4,PRKDC,SNAI2,SNTG1,UBE2V2"
TCGA.AG.3909.01A	8	48866859	49985331	29	-0.869	SMALL-LOSS	FOCAL	6	"C8orf22,EFCAB1,MCM4,PRKDC,SNAI2,UBE2V2"
TCGA.AA.A00N.01A	8	48878739	48973193	13	-0.5618	SMALL-LOSS	FOCAL	2	"MCM4,UBE2V2"
TCGA.F4.6460	8	50293109	50370207	19	-0.8783	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00F.01A	8	51306722	51705182	16	-0.5313	SMALL-LOSS	FOCAL	1	SNTG1
TCGA.AA.3967.01A	8	51442679	51621414	8	-1.1067	SMALL-LOSS	FOCAL	1	SNTG1
TCGA.CA.5797	8	51750039	51818615	18	-1.2098	SMALL-LOSS	FOCAL	0	None
TCGA.CA.5797	8	52028532	52367472	103	-1.1132	SMALL-LOSS	FOCAL	1	PXDNL
TCGA.AA.A00N.01A	8	52284436	52339169	9	-1.2539	SMALL-LOSS	FOCAL	1	PXDNL
TCGA.AG.3909.01A	8	52284436	52359514	10	-0.8651	SMALL-LOSS	FOCAL	1	PXDNL
TCGA.CK.5914.01A	8	52284436	52370028	13	-0.5521	SMALL-LOSS	FOCAL	1	PXDNL
TCGA.AA.3967.01A	8	52336103	52387481	8	-0.9549	SMALL-LOSS	FOCAL	1	PXDNL
TCGA.A6.5656	8	52844410	52853885	3	-0.5455	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	54669067	54791769	13	-0.7744	SMALL-LOSS	FOCAL	2	"ATP6V1H,RGS20"
TCGA.AA.A00N.01A	8	55013382	55541372	15	-1.2287	SMALL-LOSS	FOCAL	4	"LYPLA1,MRPL15,RP1,SOX17"
TCGA.AG.3909.01A	8	55013382	55541372	12	-0.9889	SMALL-LOSS	FOCAL	4	"LYPLA1,MRPL15,RP1,SOX17"
TCGA.F5.6813	8	55791066	56365450	246	-0.5204	SMALL-LOSS	FOCAL	1	XKR4
TCGA.A6.2677	8	56253580	57214728	296	-0.7737	SMALL-LOSS	FOCAL	9	"CHCHD7,LYN,MOS,PLAG1,RPS20,SDR16C5,TGS1,TMEM68,XKR4"
TCGA.AG.3909.01A	8	56985797	57358328	20	-0.9727	SMALL-LOSS	FOCAL	6	"CHCHD7,MOS,PENK,PLAG1,RPS20,SDR16C5"
TCGA.AG.4009.01A	8	57025454	57129858	8	-0.8896	SMALL-LOSS	FOCAL	3	"CHCHD7,MOS,PLAG1"
TCGA.AG.4009.01A	8	57353801	59059138	9	-0.6502	SMALL-LOSS	FOCAL	3	"FAM110B,IMPAD1,PENK"
TCGA.F5.6813	8	57650814	58814504	409	-0.5806	SMALL-LOSS	FOCAL	1	IMPAD1
TCGA.AA.3850	8	57706142	57738227	11	-1.23265	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	59221675	59251675	16	-1.23985	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	59704436	61004319	366	-0.66585	SMALL-LOSS	FOCAL	1	TOX
TCGA.A6.2675	8	60041977	60042410	5	-0.7171	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6172	8	61667279	63790082	742	-0.6591	SMALL-LOSS	FOCAL	4	"ASPH,CHD7,CLVS1,NKAIN3"
TCGA.AA.3850	8	62099813	62116678	10	-0.84275	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	62848875	62871141	13	-1.0464	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3911	8	63035264	63040409	3	-0.9748	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	63730458	63737340	7	-0.6074	SMALL-LOSS	FOCAL	1	NKAIN3
TCGA.AG.3909.01A	8	63927859	66605832	30	-0.6751	SMALL-LOSS	FOCAL	7	"ARMC1,BHLHE22,CYP7B1,GGH,MTFR1,TTPA,YTHDF3"
TCGA.AA.A00N.01A	8	63936415	66594561	31	-1.1367	SMALL-LOSS	FOCAL	7	"ARMC1,BHLHE22,CYP7B1,GGH,MTFR1,TTPA,YTHDF3"
TCGA.CK.5914.01A	8	63973779	66594561	25	-0.7747	SMALL-LOSS	FOCAL	6	"ARMC1,BHLHE22,CYP7B1,MTFR1,TTPA,YTHDF3"
TCGA.AG.4009.01A	8	64081897	65494073	6	-0.886	SMALL-LOSS	FOCAL	2	"BHLHE22,YTHDF3"
TCGA.AA.3850	8	64708523	65305202	89	-1.17765	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	67067805	67361052	12	-1.3188	SMALL-LOSS	FOCAL	4	"ADHFE1,CRH,RRS1,TRIM55"
TCGA.AG.3909.01A	8	67086656	67361052	10	-1.0386	SMALL-LOSS	FOCAL	4	"ADHFE1,CRH,RRS1,TRIM55"
TCGA.CK.5914.01A	8	67086656	67361052	10	-0.6715	SMALL-LOSS	FOCAL	4	"ADHFE1,CRH,RRS1,TRIM55"
TCGA.AA.A00N.01A	8	67771635	67795955	6	-1.2422	SMALL-LOSS	FOCAL	3	"C8orf44-SGK3,MCMDC2,SGK3"
TCGA.CK.5914.01A	8	67955423	67971429	7	-1.1972	SMALL-LOSS	FOCAL	1	COPS5
TCGA.AG.3909.01A	8	67963428	67988685	9	-1.0946	SMALL-LOSS	FOCAL	2	"COPS5,CSPP1"
TCGA.AA.A00N.01A	8	67963428	67998191	10	-0.9509	SMALL-LOSS	FOCAL	2	"COPS5,CSPP1"
TCGA.CK.5914.01A	8	68066212	68092033	10	-0.695	SMALL-LOSS	FOCAL	1	CSPP1
TCGA.AG.3909.01A	8	68070645	68092033	9	-1.122	SMALL-LOSS	FOCAL	1	CSPP1
TCGA.AG.4009.01A	8	68070645	68092033	9	-0.9207	SMALL-LOSS	FOCAL	1	CSPP1
TCGA.AA.A00N.01A	8	68200148	68255392	7	-1.1393	SMALL-LOSS	FOCAL	1	ARFGEF1
TCGA.AG.4009.01A	8	68204030	68255392	6	-1.0167	SMALL-LOSS	FOCAL	1	ARFGEF1
TCGA.AA.3941	8	68681769	68689851	12	-0.5873	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	8	69093863	70082787	334	-0.5293	SMALL-LOSS	FOCAL	2	"C8orf34,PREX2"
TCGA.AA.3850	8	69872566	70184330	124	-0.83415	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3913	8	70200597	70211571	4	-0.6329	SMALL-LOSS	FOCAL	0	None
TCGA.QG.A5Z1	8	70200597	70215106	5	-0.9709	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	70533261	70541700	6	-1.2689	SMALL-LOSS	FOCAL	1	SULF1
TCGA.CK.5914.01A	8	70533261	70550724	7	-1.0445	SMALL-LOSS	FOCAL	1	SULF1
TCGA.AA.A01Q.01A	8	70536149	70540342	4	-0.7212	SMALL-LOSS	FOCAL	1	SULF1
TCGA.AG.3909.01A	8	70743975	70981374	7	-1.0814	SMALL-LOSS	FOCAL	2	"PRDM14,SLCO5A1"
TCGA.CK.5914.01A	8	70743975	70981374	7	-0.8539	SMALL-LOSS	FOCAL	2	"PRDM14,SLCO5A1"
TCGA.AA.A00N.01A	8	70743975	71025781	8	-0.9856	SMALL-LOSS	FOCAL	3	"NCOA2,PRDM14,SLCO5A1"
TCGA.AA.3662	8	72203239	72210459	3	-1.0791	SMALL-LOSS	FOCAL	1	EYA1
TCGA.G4.6306	8	73030938	73031645	3	-1.152	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	8	74203227	74209390	7	-0.9048	SMALL-LOSS	FOCAL	2	"RDH10,RPL7"
TCGA.AA.3844	8	75332822	80404795	1270	-0.5346	SMALL-LOSS	FOCAL	8	"CRISPLD1,HNF4G,IL7,PEX2,PI15,PKIA,ZC2HC1A,ZFHX4"
TCGA.AA.3850	8	75580418	76274725	175	-0.52915	SMALL-LOSS	FOCAL	2	"CRISPLD1,PI15"
TCGA.CM.6163	8	76003012	76028905	16	-0.6765	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	76446508	76542559	29	-0.51465	SMALL-LOSS	FOCAL	1	HNF4G
TCGA.AA.3850	8	76569841	76711111	48	-0.56585	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	76724601	80476775	893	-0.88335	SMALL-LOSS	FOCAL	5	"IL7,PEX2,PKIA,ZC2HC1A,ZFHX4"
TCGA.F5.6813	8	77539321	77921395	87	-0.5343	SMALL-LOSS	FOCAL	2	"PEX2,ZFHX4"
TCGA.QG.A5Z1	8	77969817	78271110	97	-0.7925	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	82437229	82630338	19	-0.8729	SMALL-LOSS	FOCAL	4	"FABP12,IMPA1,SLC10A5,ZFAND1"
TCGA.AA.3982	8	84479160	84506310	9	-1.2361	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6881	8	84737944	84972066	69	-0.6033	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	86021783	86027298	4	-1.2321	SMALL-LOSS	FOCAL	1	LRRCC1
TCGA.AG.3909.01A	8	86021783	86027298	4	-1.0986	SMALL-LOSS	FOCAL	1	LRRCC1
TCGA.CK.5914.01A	8	86021783	86089629	17	-0.8729	SMALL-LOSS	FOCAL	2	"E2F5,LRRCC1"
TCGA.AG.3909.01A	8	86035607	86048007	8	-0.6421	SMALL-LOSS	FOCAL	1	LRRCC1
TCGA.AA.A00N.01A	8	86047033	86057587	6	-1.0513	SMALL-LOSS	FOCAL	1	LRRCC1
TCGA.AG.3909.01A	8	86049662	86057587	4	-1.0377	SMALL-LOSS	FOCAL	1	LRRCC1
TCGA.AG.3909.01A	8	86351944	87076152	14	-0.6572	SMALL-LOSS	FOCAL	3	"CA2,CA3,PSKH2"
TCGA.AA.A00N.01A	8	86377453	87076152	8	-0.9295	SMALL-LOSS	FOCAL	2	"CA2,PSKH2"
TCGA.AA.3982	8	86982386	86991111	5	-0.6968	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	8	87386237	87443581	10	-0.9278	SMALL-LOSS	FOCAL	1	WWP1
TCGA.AA.A00N.01A	8	87386237	87450807	12	-1.2581	SMALL-LOSS	FOCAL	1	WWP1
TCGA.AG.3909.01A	8	87386237	87450807	12	-1.2331	SMALL-LOSS	FOCAL	1	WWP1
TCGA.AG.4009.01A	8	87386237	87450807	12	-0.9306	SMALL-LOSS	FOCAL	1	WWP1
TCGA.CK.5914.01A	8	87486476	87519175	9	-0.8112	SMALL-LOSS	FOCAL	1	RMDN1
TCGA.AA.A00N.01A	8	87486476	87552419	16	-0.7007	SMALL-LOSS	FOCAL	2	"CPNE3,RMDN1"
TCGA.AG.3909.01A	8	87486476	87556941	16	-0.9693	SMALL-LOSS	FOCAL	2	"CPNE3,RMDN1"
TCGA.AA.A00N.01A	8	89339257	90784888	7	-1.1584	SMALL-LOSS	FOCAL	2	"MMP16,RIPK2"
TCGA.G4.6626	8	90184575	90429704	81	-0.8433	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3807	8	90319297	90628647	82	-0.9515	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6682	8	90429704	90558934	15	-0.5735	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3860	8	90564113	90671383	52	-0.5217	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6460	8	90815234	91186786	114	-0.7809	SMALL-LOSS	FOCAL	4	"CALB1,DECR1,NBN,OSGIN2"
TCGA.AG.3909.01A	8	90983373	90994898	5	-0.9547	SMALL-LOSS	FOCAL	1	NBN
TCGA.CK.5914.01A	8	90990400	90994898	5	-1.2243	SMALL-LOSS	FOCAL	1	NBN
TCGA.AA.A010.01A	8	91637860	92096998	30	-0.8793	SMALL-LOSS	FOCAL	5	"C8orf88,NECAB1,OTUD6B,TMEM55A,TMEM64"
TCGA.F5.6813	8	91784545	91887024	26	-0.5599	SMALL-LOSS	FOCAL	1	NECAB1
TCGA.AA.A00L.01A	8	92261841	93088137	29	-0.8941	SMALL-LOSS	FOCAL	2	"RUNX1T1,SLC26A7"
TCGA.AA.A00N.01A	8	93074721	94740398	10	-1.0368	SMALL-LOSS	FOCAL	4	"C8orf87,FAM92A1,RUNX1T1,TRIQK"
TCGA.AG.3893	8	93725522	95345127	455	-0.5954	SMALL-LOSS	FOCAL	8	"C8orf87,CDH17,FAM92A1,GEM,PDP1,RBM12B,TMEM67,TRIQK"
TCGA.CK.5914.01A	8	94713435	94776022	14	-0.8449	SMALL-LOSS	FOCAL	3	"FAM92A1,RBM12B,TMEM67"
TCGA.AA.A00N.01A	8	94929992	95142807	6	-1.2315	SMALL-LOSS	FOCAL	2	"CDH17,PDP1"
TCGA.AA.A00N.01A	8	95264208	95272353	3	-0.6491	SMALL-LOSS	FOCAL	1	GEM
TCGA.AA.3872	8	95444581	95453847	3	-0.9109	SMALL-LOSS	FOCAL	2	"FSBP,RAD54B"
TCGA.A6.6653	8	95585806	95636051	13	-0.5626	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	95653510	95658354	4	-0.76	SMALL-LOSS	FOCAL	1	ESRP1
TCGA.AG.3909.01A	8	95837108	95839897	3	-0.713	SMALL-LOSS	FOCAL	1	INTS8
TCGA.CK.5914.01A	8	95837108	95841141	4	-1.2076	SMALL-LOSS	FOCAL	1	INTS8
TCGA.CK.5914.01A	8	95866006	95894958	14	-0.6899	SMALL-LOSS	FOCAL	2	"CCNE2,INTS8"
TCGA.AA.A00N.01A	8	95888238	95894958	5	-1.0058	SMALL-LOSS	FOCAL	2	"CCNE2,INTS8"
TCGA.CK.5914.01A	8	95897266	95906089	6	-1.2851	SMALL-LOSS	FOCAL	1	CCNE2
TCGA.AA.A00N.01A	8	95942659	96047631	6	-1.1632	SMALL-LOSS	FOCAL	2	"NDUFAF6,TP53INP1"
TCGA.AG.A02N	8	96047932	96564169	255	-0.8052	SMALL-LOSS	FOCAL	3	"C8orf37,NDUFAF6,PLEKHF2"
TCGA.AA.3681	8	96195170	96208725	10	-0.8834	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	8	96478762	96484643	5	-1.0041	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	96478762	96499698	16	-1.28725	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	96483450	96491640	9	-1.3024	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	8	96573838	96645598	24	-0.5162	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	96667412	96677322	8	-0.6673	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	96925736	96939757	7	-0.9065	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	96925736	96968465	16	-1.07135	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	97258032	97296270	8	-1.2005	SMALL-LOSS	FOCAL	2	"MTERF3,PTDSS1"
TCGA.AG.3909.01A	8	97263087	97285476	5	-0.6344	SMALL-LOSS	FOCAL	2	"MTERF3,PTDSS1"
TCGA.CA.5797	8	98337349	98352161	4	-1.1326	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	8	99042639	99057130	8	-0.7175	SMALL-LOSS	FOCAL	2	"MATN2,RPL30"
TCGA.5M.AAT5	8	99068253	99072160	3	-0.9466	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	8	99961130	100050604	5	-0.8733	SMALL-LOSS	FOCAL	2	"OSR2,VPS13B"
TCGA.AG.4009.01A	8	99961130	100050604	5	-0.5724	SMALL-LOSS	FOCAL	2	"OSR2,VPS13B"
TCGA.CK.5914.01A	8	99961130	100050604	5	-1.2056	SMALL-LOSS	FOCAL	2	"OSR2,VPS13B"
TCGA.AA.A00N.01A	8	99961130	100108528	6	-0.8971	SMALL-LOSS	FOCAL	2	"OSR2,VPS13B"
TCGA.AG.3594	8	100074351	100721945	75	-0.5361	SMALL-LOSS	FOCAL	1	VPS13B
TCGA.D5.6531	8	100292743	101763258	325	-0.957	SMALL-LOSS	FOCAL	10	"ANKRD46,COX6C,FBXO43,PABPC1,POLR2K,RGS22,RNF19A,SNX31,SPAG1,VPS13B"
TCGA.AG.3909.01A	8	100880475	100904107	6	-0.716	SMALL-LOSS	FOCAL	2	"COX6C,VPS13B"
TCGA.AA.A00N.01A	8	100887629	100904107	3	-1.0836	SMALL-LOSS	FOCAL	2	"COX6C,VPS13B"
TCGA.AA.3941	8	101099766	101104013	3	-1.1134	SMALL-LOSS	FOCAL	1	RGS22
TCGA.A6.3808.01A	8	101105606	101243344	26	-1.2788	SMALL-LOSS	FOCAL	4	"FBXO43,POLR2K,RGS22,SPAG1"
TCGA.AG.3909.01A	8	101117537	101174462	11	-1.2563	SMALL-LOSS	FOCAL	4	"FBXO43,POLR2K,RGS22,SPAG1"
TCGA.CK.5914.01A	8	101117537	101177990	13	-1.1681	SMALL-LOSS	FOCAL	4	"FBXO43,POLR2K,RGS22,SPAG1"
TCGA.AG.A01L.01A	8	101154311	101165446	5	-0.61	SMALL-LOSS	FOCAL	2	"FBXO43,POLR2K"
TCGA.CK.5914.01A	8	101225996	101252653	7	-0.8521	SMALL-LOSS	FOCAL	1	SPAG1
TCGA.AA.A00N.01A	8	101716476	102504911	21	-1.2202	SMALL-LOSS	FOCAL	4	"GRHL2,PABPC1,YWHAZ,ZNF706"
TCGA.AG.3909.01A	8	101960772	102504911	4	-0.9873	SMALL-LOSS	FOCAL	3	"GRHL2,YWHAZ,ZNF706"
TCGA.AA.A00N.01A	8	103224957	103244330	7	-0.6656	SMALL-LOSS	FOCAL	1	RRM2B
TCGA.AA.A00N.01A	8	103662361	104053017	15	-0.7731	SMALL-LOSS	FOCAL	3	"ATP6V1C1,AZIN1,KLF10"
TCGA.AM.5821	8	103978698	103979058	3	-0.682	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	8	104063962	104067876	5	-0.6825	SMALL-LOSS	FOCAL	1	ATP6V1C1
TCGA.AA.3941	8	104063962	104067908	6	-1.1871	SMALL-LOSS	FOCAL	1	ATP6V1C1
TCGA.AA.3982	8	104063962	104067908	6	-1.1975	SMALL-LOSS	FOCAL	1	ATP6V1C1
TCGA.AA.A00N.01A	8	104312304	104444841	23	-0.8163	SMALL-LOSS	FOCAL	4	"CTHRC1,DCAF13,FZD6,SLC25A32"
TCGA.F5.6702	8	104357946	104365361	14	-0.5226	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	8	104535510	104537714	4	-0.6717	SMALL-LOSS	FOCAL	1	RIMS2
TCGA.CA.6718	8	105329095	105331812	3	-1.1339	SMALL-LOSS	FOCAL	0	None
TCGA.DC.5869	8	108134579	108136476	3	-1.2335	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6322	8	108644706	108880566	87	-0.5929	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6170	8	108879972	108880566	3	-1.2961	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6322	8	109020121	109197540	56	-0.6993	SMALL-LOSS	FOCAL	1	RSPO2
TCGA.AA.A010.01A	8	110487320	110498840	9	-0.7779	SMALL-LOSS	FOCAL	1	PKHD1L1
TCGA.AA.A00N.01A	8	110519862	110522959	3	-0.5199	SMALL-LOSS	FOCAL	1	PKHD1L1
TCGA.AA.A010.01A	8	110519862	110576659	16	-0.6802	SMALL-LOSS	FOCAL	2	"EBAG9,PKHD1L1"
TCGA.AA.A00N.01A	8	110527387	110573026	12	-1.1143	SMALL-LOSS	FOCAL	2	"EBAG9,PKHD1L1"
TCGA.AA.A00N.01A	8	110654910	110984436	4	-0.7105	SMALL-LOSS	FOCAL	2	"KCNV1,SYBU"
TCGA.AA.3850	8	110719429	117128078	1465	-0.87635	SMALL-LOSS	FOCAL	3	"CSMD3,KCNV1,TRPS1"
TCGA.AA.3844	8	110735842	116848488	1395	-0.6337	SMALL-LOSS	FOCAL	3	"CSMD3,KCNV1,TRPS1"
TCGA.F5.6813	8	110798610	112515259	330	-0.5562	SMALL-LOSS	FOCAL	1	KCNV1
TCGA.AA.3982	8	111908927	111980956	14	-0.7216	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GB	8	112172109	112179120	3	-1.0421	SMALL-LOSS	FOCAL	0	None
TCGA.F5.6571	8	112775449	115803536	672	-0.5493	SMALL-LOSS	FOCAL	1	CSMD3
TCGA.CK.6746	8	114124832	114137249	3	-0.6133	SMALL-LOSS	FOCAL	1	CSMD3
TCGA.F5.6813	8	114124883	117501802	854	-0.5724	SMALL-LOSS	FOCAL	2	"CSMD3,TRPS1"
TCGA.AA.3956	8	114962990	114980626	3	-1.1796	SMALL-LOSS	FOCAL	0	None
TCGA.DC.5869	8	115632042	115650786	3	-0.9886	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3956	8	116256265	116262668	7	-0.5219	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6965	8	116597408	116597715	4	-0.5274	SMALL-LOSS	FOCAL	1	TRPS1
TCGA.CK.4952.01A	8	117726374	117947974	24	-0.9513	SMALL-LOSS	FOCAL	3	"EIF3H,RAD21,UTP23"
TCGA.AA.A010.01A	8	117861128	118147506	15	-0.9548	SMALL-LOSS	FOCAL	3	"AARD,RAD21,SLC30A8"
TCGA.AA.A00N.01A	8	117864736	117954775	11	-1.0985	SMALL-LOSS	FOCAL	2	"AARD,RAD21"
TCGA.A6.2671	8	118839511	119051191	78	-0.7755	SMALL-LOSS	FOCAL	1	EXT1
TCGA.T9.A92H	8	119272492	119873270	258	-0.7188	SMALL-LOSS	FOCAL	1	SAMD12
TCGA.AA.A00N.01A	8	120233779	120435067	7	-0.7304	SMALL-LOSS	FOCAL	2	"MAL2,NOV"
TCGA.CK.5914.01A	8	120843843	120865238	10	-0.7144	SMALL-LOSS	FOCAL	2	"DSCC1,TAF2"
TCGA.AA.3982	8	121277395	121283831	5	-0.9258	SMALL-LOSS	FOCAL	1	COL14A1
TCGA.AA.3982	8	121807653	121831651	10	-0.5743	SMALL-LOSS	FOCAL	1	SNTB1
TCGA.AA.3527	8	122881736	123246880	99	-0.7112	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	8	123039949	123043442	4	-1.0036	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3955	8	123042547	123043442	3	-1.0501	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3715	8	123744736	123807377	37	-0.5613	SMALL-LOSS	FOCAL	1	ZHX2
TCGA.A6.3808.01A	8	124113009	124138701	6	-0.7157	SMALL-LOSS	FOCAL	1	TBC1D31
TCGA.AG.3909.01A	8	124206224	124335131	12	-0.7123	SMALL-LOSS	FOCAL	5	"ATAD2,C8orf76,FAM83A,ZHX1,ZHX1-C8orf76"
TCGA.AA.A00N.01A	8	124786266	124797832	10	-1.2185	SMALL-LOSS	FOCAL	1	FAM91A1
TCGA.AG.A02N	8	125102298	125106324	3	-1.0673	SMALL-LOSS	FOCAL	1	FER1L6
TCGA.AA.3941	8	125754150	125756682	7	-0.6288	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	8	126079786	126095303	8	-0.6118	SMALL-LOSS	FOCAL	1	KIAA0196
TCGA.AA.A010.01A	8	126445542	126448209	2	-0.8017	SMALL-LOSS	FOCAL	1	TRIB1
TCGA.DM.A0XF	8	126516196	126521806	3	-0.5849	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3911	8	126541658	126543927	3	-0.6022	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3727	8	127306100	127306685	3	-0.7608	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D6	8	127990254	128133075	64	-0.7408	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	8	128065985	128077520	6	-0.8639	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3862.01A	8	128808165	133644959	146	-0.5789	SMALL-LOSS	FOCAL	9	"ADCY8,ASAP1,EFR3A,FAM49B,GSDMC,HHLA1,KCNQ3,LRRC6,OC90"
TCGA.AD.6899	8	128934899	128935422	3	-0.914	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	129494449	130349062	269	-0.60535	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	8	129679056	129682764	4	-1.092	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6601	8	129752173	129756265	3	-0.9376	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	130412437	130454125	15	-0.85655	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	130501929	130528076	9	-0.80365	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	130624660	130635279	12	-0.86935	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	8	131234779	131256677	11	-1.0101	SMALL-LOSS	FOCAL	1	ASAP1
TCGA.A6.2686	8	131271215	131346065	29	-0.7931	SMALL-LOSS	FOCAL	1	ASAP1
TCGA.AA.3850	8	131827427	132852095	387	-0.60445	SMALL-LOSS	FOCAL	1	ADCY8
TCGA.AA.3872	8	132209925	132228024	5	-0.8291	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3956	8	132209925	132228024	5	-0.6198	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3975	8	132228024	132230280	3	-0.5481	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3526	8	132353009	132353413	3	-1.1739	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	132925631	133023162	26	-0.66755	SMALL-LOSS	FOCAL	1	EFR3A
TCGA.AA.A010.01A	8	133763984	133856359	21	-0.8794	SMALL-LOSS	FOCAL	2	"PHF20L1,TMEM71"
TCGA.AA.3850	8	133782185	133868584	22	-1.17955	SMALL-LOSS	FOCAL	1	PHF20L1
TCGA.AA.3941	8	133782185	133868673	23	-0.8053	SMALL-LOSS	FOCAL	1	PHF20L1
TCGA.AA.3982	8	133813473	133815870	4	-1.1268	SMALL-LOSS	FOCAL	1	PHF20L1
TCGA.AA.3811	8	133813473	133845377	9	-0.8072	SMALL-LOSS	FOCAL	1	PHF20L1
TCGA.AA.3872	8	133815575	133815870	3	-1.0051	SMALL-LOSS	FOCAL	1	PHF20L1
TCGA.AG.3594	8	134083412	134084032	3	-0.8256	SMALL-LOSS	FOCAL	2	"SLA,TG"
TCGA.AG.3909.01A	8	134237586	134266714	9	-0.7874	SMALL-LOSS	FOCAL	2	"NDRG1,WISP1"
TCGA.AA.A01Q.01A	8	134239655	134476974	20	-0.5849	SMALL-LOSS	FOCAL	3	"NDRG1,ST3GAL1,WISP1"
TCGA.CA.5254	8	135061280	135062236	4	-1.157	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	135126102	135136656	5	-1.2382	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3592	8	135483882	136280245	358	-0.5732	SMALL-LOSS	FOCAL	1	ZFAT
TCGA.CM.6675	8	135697950	138861505	1265	-1.1112	SMALL-LOSS	FOCAL	2	"KHDRBS3,ZFAT"
TCGA.AA.3941	8	136292542	136293805	3	-0.9631	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	136317492	136320922	5	-0.8287	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	8	136991745	137012835	10	-0.6945	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	8	137146348	137148084	5	-0.9483	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	8	137147466	138846090	674	-0.63975	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3913	8	138309738	138309955	3	-1.0621	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	8	138380401	138381899	3	-1.2843	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	8	138479196	138493982	9	-0.5652	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3956	8	138493051	138493741	3	-0.8073	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A8F8	8	138861286	138863137	3	-0.8038	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3862.01A	8	139614284	139732912	34	-1.0731	SMALL-LOSS	FOCAL	1	COL22A1
TCGA.AA.3941	8	140131834	140143481	13	-0.8277	SMALL-LOSS	FOCAL	0	None
TCGA.SS.A7HO	8	140829768	140839649	4	-0.9623	SMALL-LOSS	FOCAL	1	TRAPPC9
TCGA.AY.A71X	8	141125166	142452224	304	-0.5187	SMALL-LOSS	FOCAL	9	"AGO2,CHRAC1,DENND3,GPR20,MROH5,PTK2,PTP4A3,SLC45A4,TRAPPC9"
TCGA.AG.3909.01A	8	141301038	141595167	32	-0.5583	SMALL-LOSS	FOCAL	3	"AGO2,CHRAC1,TRAPPC9"
TCGA.AA.A01Q.01A	8	141521547	141595167	21	-0.5989	SMALL-LOSS	FOCAL	2	"AGO2,CHRAC1"
TCGA.CK.5914.01A	8	141524420	141595167	20	-0.9316	SMALL-LOSS	FOCAL	2	"AGO2,CHRAC1"
TCGA.AG.3896	8	141860894	141950319	15	-0.5247	SMALL-LOSS	FOCAL	1	PTK2
TCGA.AA.A01Q.01A	8	142148074	142366899	29	-0.8334	SMALL-LOSS	FOCAL	3	"DENND3,GPR20,SLC45A4"
TCGA.AG.3909.01A	8	142185277	142238232	17	-0.9841	SMALL-LOSS	FOCAL	2	"DENND3,SLC45A4"
TCGA.AA.3861.01A	8	142498597	143605541	34	-1.2832	SMALL-LOSS	FOCAL	3	"ADGRB1,MROH5,TSNARE1"
TCGA.DM.A28H	8	142575144	142576453	3	-0.5601	SMALL-LOSS	FOCAL	0	None
TCGA.G5.6235	8	142586109	142595916	3	-1.1763	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	8	143310796	143784233	18	-0.5864	SMALL-LOSS	FOCAL	6	"ADGRB1,ARC,JRK,LY6K,PSCA,TSNARE1"
TCGA.AA.3872	8	143728374	143736983	3	-0.5581	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6163	8	143851754	143874592	3	-1.0892	SMALL-LOSS	FOCAL	2	"LY6D,LYNX1"
TCGA.AA.3844	8	143925854	143926926	3	-0.9718	SMALL-LOSS	FOCAL	1	GML
TCGA.AG.4009.01A	8	144239616	144413354	21	-0.786	SMALL-LOSS	FOCAL	6	"GLI4,GPIHBP1,LY6H,TOP1MT,ZFP41,ZNF696"
TCGA.AA.A01Q.01A	8	144332013	144378298	8	-0.7448	SMALL-LOSS	FOCAL	3	"GLI4,ZFP41,ZNF696"
TCGA.AA.A00N.01A	8	144690178	144775810	14	-1.0428	SMALL-LOSS	FOCAL	4	"PYCRL,TSTA3,ZNF623,ZNF707"
TCGA.AA.A010.01A	8	144732001	144789799	8	-0.7577	SMALL-LOSS	FOCAL	3	"CCDC166,ZNF623,ZNF707"
TCGA.AG.4009.01A	8	144801466	144917766	30	-0.7124	SMALL-LOSS	FOCAL	5	"FAM83H,MAPK15,NRBP2,PUF60,SCRIB"
TCGA.AA.A010.01A	8	144873296	144885504	7	-0.9082	SMALL-LOSS	FOCAL	1	SCRIB
TCGA.AA.A010.01A	8	145013481	145027818	7	-0.8012	SMALL-LOSS	FOCAL	1	PLEC
TCGA.AA.A010.01A	8	145086647	145137979	19	-0.7732	SMALL-LOSS	FOCAL	4	"EXOSC4,GPAA1,OPLAH,SPATC1"
TCGA.AG.3906.01A	8	145218642	145277960	9	-0.519	SMALL-LOSS	FOCAL	1	MROH1
TCGA.AF.3914.01A	8	145512739	145584242	17	-0.6525	SMALL-LOSS	FOCAL	7	"BOP1,DGAT1,FBXL6,HSF1,SCRT1,SLC52A2,TMEM249"
TCGA.AA.A010.01A	8	145597714	145654504	29	-1.0837	SMALL-LOSS	FOCAL	5	"ADCK5,CPSF1,SLC39A4,TONSL,VPS28"
TCGA.AA.3930.01A	8	145735711	145763052	14	-0.955	SMALL-LOSS	FOCAL	6	"ARHGAP39,C8orf82,LRRC14,LRRC24,MFSD3,RECQL4"
TCGA.AG.3726	8	145929542	146293413	70	-0.6341	SMALL-LOSS	FOCAL	9	"C8orf33,COMMD5,RPL8,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.A00N.01A	8	145947001	146112160	27	-1.1162	SMALL-LOSS	FOCAL	7	"COMMD5,RPL8,ZNF250,ZNF251,ZNF34,ZNF517,ZNF7"
TCGA.AA.A010.01A	8	145998649	146067713	19	-0.5156	SMALL-LOSS	FOCAL	4	"RPL8,ZNF34,ZNF517,ZNF7"
TCGA.AA.A02K.01A	8	146277792	146279363	2	-0.8266	SMALL-LOSS	FOCAL	1	C8orf33
TCGA.AG.4009.01A	8	146277799	146279416	3	-0.8548	SMALL-LOSS	FOCAL	1	C8orf33
TCGA.CM.6170	8	146290272	146293413	3	-0.7393	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	14815	177659	11	-0.7599	SMALL-LOSS	FOCAL	3	"CBWD1,FOXD4,WASH1"
TCGA.AA.3939.01A	9	116866	121449	4	-0.8561	SMALL-LOSS	FOCAL	2	"CBWD1,FOXD4"
TCGA.AG.4009.01A	9	116866	121449	3	-0.9322	SMALL-LOSS	FOCAL	2	"CBWD1,FOXD4"
TCGA.AG.3909.01A	9	116866	214478	7	-1.0006	SMALL-LOSS	FOCAL	3	"C9orf66,CBWD1,FOXD4"
TCGA.A6.6653	9	192128	216123	3	-1.2546	SMALL-LOSS	FOCAL	2	"C9orf66,DOCK8"
TCGA.A6.A56B	9	192128	229677	13	-0.6387	SMALL-LOSS	FOCAL	2	"C9orf66,DOCK8"
TCGA.A6.2671	9	192128	249280	22	-0.604	SMALL-LOSS	FOCAL	2	"C9orf66,DOCK8"
TCGA.CM.6675	9	192128	592076	271	-1.0472	SMALL-LOSS	FOCAL	3	"C9orf66,DOCK8,KANK1"
TCGA.A6.2672	9	192128	592888	276	-0.5546	SMALL-LOSS	FOCAL	3	"C9orf66,DOCK8,KANK1"
TCGA.AA.3941	9	192128	1062694	563	-0.8773	SMALL-LOSS	FOCAL	6	"C9orf66,DMRT1,DMRT2,DMRT3,DOCK8,KANK1"
TCGA.AA.3982	9	347824	351557	4	-0.9456	SMALL-LOSS	FOCAL	1	DOCK8
TCGA.AG.A015.01A	9	382493	414750	8	-0.7004	SMALL-LOSS	FOCAL	1	DOCK8
TCGA.AA.A017.01A	9	386280	406878	6	-0.6864	SMALL-LOSS	FOCAL	1	DOCK8
TCGA.AA.A00A.01A	9	386280	414750	7	-0.5544	SMALL-LOSS	FOCAL	1	DOCK8
TCGA.A6.5665	9	422156	592888	120	-0.8116	SMALL-LOSS	FOCAL	2	"DOCK8,KANK1"
TCGA.A6.2671	9	495804	552378	32	-0.6413	SMALL-LOSS	FOCAL	1	KANK1
TCGA.5M.AATA	9	510699	526771	7	-1.2953	SMALL-LOSS	FOCAL	1	KANK1
TCGA.A6.2671	9	592305	764049	123	-0.6721	SMALL-LOSS	FOCAL	1	KANK1
TCGA.CM.6675	9	608702	4007768	2173	-1.0417	SMALL-LOSS	FOCAL	10	"DMRT1,DMRT2,DMRT3,GLIS3,KANK1,KCNV2,KIAA0020,RFX3,SMARCA2,VLDLR"
TCGA.A6.2671	9	923016	929643	9	-0.6993	SMALL-LOSS	FOCAL	1	DMRT1
TCGA.AA.A010.01A	9	967984	1056176	7	-0.7001	SMALL-LOSS	FOCAL	3	"DMRT1,DMRT2,DMRT3"
TCGA.AG.4009.01A	9	967984	2039454	8	-0.9599	SMALL-LOSS	FOCAL	4	"DMRT1,DMRT2,DMRT3,SMARCA2"
TCGA.AG.3909.01A	9	1053690	2032915	5	-1.082	SMALL-LOSS	FOCAL	2	"DMRT2,SMARCA2"
TCGA.AA.A00N.01A	9	1053690	2060774	11	-1.1455	SMALL-LOSS	FOCAL	2	"DMRT2,SMARCA2"
TCGA.A6.2671	9	1065404	1124135	51	-0.6694	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2671	9	1373386	1740717	342	-0.6685	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	9	1535066	1550402	13	-1.0621	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3870	9	1537941	1555133	16	-0.7021	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6931	9	1766254	1772158	4	-1.0207	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2671	9	2133188	2305755	155	-0.6226	SMALL-LOSS	FOCAL	1	SMARCA2
TCGA.A6.2671	9	2320710	2539494	154	-0.5652	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2671	9	2841895	2879562	19	-0.6428	SMALL-LOSS	FOCAL	1	KIAA0020
TCGA.AA.A00N.01A	9	2907032	2948116	7	-1.2065	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2671	9	2978376	3517671	227	-0.5432	SMALL-LOSS	FOCAL	1	RFX3
TCGA.AA.3530	9	3126262	3132235	11	-1.121	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3989	9	3168099	3169844	7	-1.0577	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2671	9	3844390	3861205	21	-0.6467	SMALL-LOSS	FOCAL	1	GLIS3
TCGA.A6.2671	9	3908215	3948473	43	-0.7461	SMALL-LOSS	FOCAL	1	GLIS3
TCGA.G4.6309	9	4080698	4317935	212	-0.816	SMALL-LOSS	FOCAL	1	GLIS3
TCGA.AA.3941	9	4159205	4959023	517	-1.0401	SMALL-LOSS	FOCAL	7	"AK3,CDC37L1,GLIS3,PPAPDC2,RCL1,SLC1A1,SPATA6L"
TCGA.AA.3989	9	4290084	4291758	4	-1.2095	SMALL-LOSS	FOCAL	1	GLIS3
TCGA.CK.5914.01A	9	4646413	4688471	8	-0.6651	SMALL-LOSS	FOCAL	3	"CDC37L1,PPAPDC2,SPATA6L"
TCGA.AG.3909.01A	9	4656019	4697715	9	-0.8163	SMALL-LOSS	FOCAL	3	"CDC37L1,PPAPDC2,SPATA6L"
TCGA.CK.5914.01A	9	5029735	5050669	3	-0.7568	SMALL-LOSS	FOCAL	1	JAK2
TCGA.AG.3909.01A	9	5029735	5122952	18	-1.1602	SMALL-LOSS	FOCAL	1	JAK2
TCGA.AG.4009.01A	9	5044354	5073680	10	-0.6979	SMALL-LOSS	FOCAL	1	JAK2
TCGA.AG.4009.01A	9	5077406	5090396	6	-1.2376	SMALL-LOSS	FOCAL	1	JAK2
TCGA.CK.5914.01A	9	5078266	5126634	8	-0.7235	SMALL-LOSS	FOCAL	1	JAK2
TCGA.EI.7004	9	5317533	5337681	5	-0.7009	SMALL-LOSS	FOCAL	1	RLN1
TCGA.AG.4009.01A	9	5988322	6012353	3	-0.986	SMALL-LOSS	FOCAL	2	"KIAA2026,RANBP6"
TCGA.AA.3941	9	6399587	6915048	188	-0.5638	SMALL-LOSS	FOCAL	3	"GLDC,KDM4C,UHRF2"
TCGA.AG.3909.01A	9	6620153	6814579	6	-1.2251	SMALL-LOSS	FOCAL	2	"GLDC,KDM4C"
TCGA.AA.A017.01A	9	6620153	6849480	7	-0.9398	SMALL-LOSS	FOCAL	2	"GLDC,KDM4C"
TCGA.CK.5914.01A	9	6620153	6849480	9	-0.5776	SMALL-LOSS	FOCAL	2	"GLDC,KDM4C"
TCGA.AA.A00N.01A	9	6620153	6879935	10	-1.0994	SMALL-LOSS	FOCAL	2	"GLDC,KDM4C"
TCGA.AA.3941	9	6919983	6976914	36	-0.7485	SMALL-LOSS	FOCAL	1	KDM4C
TCGA.AA.3941	9	6977232	7503295	410	-1.2317	SMALL-LOSS	FOCAL	1	KDM4C
TCGA.DY.A1DF	9	7264767	8972170	1020	-0.5616	SMALL-LOSS	FOCAL	2	"PTPRD,TMEM261"
TCGA.AA.3850	9	7413293	9270119	1050	-0.57255	SMALL-LOSS	FOCAL	2	"PTPRD,TMEM261"
TCGA.NH.A6GC	9	7539380	7539566	3	-0.6423	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3866	9	8179591	8180122	3	-1.2419	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	9	8235897	12738689	2073	-1.1987	SMALL-LOSS	FOCAL	2	"PTPRD,TYRP1"
TCGA.G4.6299	9	8293621	8310321	8	-1.1674	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	8523418	8528554	5	-1.2085	SMALL-LOSS	FOCAL	1	PTPRD
TCGA.CA.5254	9	8751967	8816664	49	-1.079	SMALL-LOSS	FOCAL	1	PTPRD
TCGA.EI.6507	9	8984646	9476542	282	-0.5513	SMALL-LOSS	FOCAL	1	PTPRD
TCGA.AA.3850	9	9294995	9649667	200	-0.58135	SMALL-LOSS	FOCAL	1	PTPRD
TCGA.AA.3850	9	9698529	14088804	1898	-0.63895	SMALL-LOSS	FOCAL	5	"LURAP1L,MPDZ,NFIB,PTPRD,TYRP1"
TCGA.AY.A71X	9	10716841	12113182	511	-0.8023	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3901	9	11003939	11016455	10	-0.6041	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3848	9	11995296	11996269	4	-1.2859	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	9	12739131	13609118	331	-0.6672	SMALL-LOSS	FOCAL	2	"LURAP1L,MPDZ"
TCGA.AA.3850	9	14103577	14193793	41	-0.54455	SMALL-LOSS	FOCAL	1	NFIB
TCGA.AA.A00N.01A	9	14155772	14674137	12	-1.0937	SMALL-LOSS	FOCAL	2	"NFIB,ZDHHC21"
TCGA.AA.3850	9	14611365	14678729	40	-0.94195	SMALL-LOSS	FOCAL	1	ZDHHC21
TCGA.AG.3909.01A	9	14658750	14674137	4	-1.1288	SMALL-LOSS	FOCAL	1	ZDHHC21
TCGA.AF.A56K	9	15158902	15159848	3	-1.1613	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	9	15423847	15452992	6	-0.8326	SMALL-LOSS	FOCAL	1	SNAPC3
TCGA.AA.A010.01A	9	15423847	15471116	14	-0.6623	SMALL-LOSS	FOCAL	2	"PSIP1,SNAPC3"
TCGA.AG.4009.01A	9	15433526	15452992	5	-1.0722	SMALL-LOSS	FOCAL	1	SNAPC3
TCGA.AA.A010.01A	9	15472613	15506507	8	-1.2725	SMALL-LOSS	FOCAL	1	PSIP1
TCGA.CK.5914.01A	9	15506507	15578799	5	-0.7297	SMALL-LOSS	FOCAL	2	"CCDC171,PSIP1"
TCGA.AA.3850	9	15714657	16017829	106	-0.71985	SMALL-LOSS	FOCAL	1	CCDC171
TCGA.AA.A00N.01A	9	16727795	17366568	17	-0.6833	SMALL-LOSS	FOCAL	2	"BNC2,CNTLN"
TCGA.AZ.4315	9	16897684	18102687	585	-0.651	SMALL-LOSS	FOCAL	2	"CNTLN,SH3GL2"
TCGA.AA.3930.01A	9	17135134	17340788	12	-0.5758	SMALL-LOSS	FOCAL	1	CNTLN
TCGA.AA.3850	9	17630590	17633231	9	-1.07315	SMALL-LOSS	FOCAL	1	SH3GL2
TCGA.AA.3850	9	17651340	17657018	6	-1.09245	SMALL-LOSS	FOCAL	1	SH3GL2
TCGA.AA.3850	9	17683494	17702537	17	-0.98555	SMALL-LOSS	FOCAL	1	SH3GL2
TCGA.AA.3941	9	17717227	17985591	160	-0.7447	SMALL-LOSS	FOCAL	1	SH3GL2
TCGA.AA.3850	9	17734770	17741357	12	-1.12255	SMALL-LOSS	FOCAL	1	SH3GL2
TCGA.AA.3941	9	18002204	18678534	343	-0.9547	SMALL-LOSS	FOCAL	1	ADAMTSL1
TCGA.AG.3909.01A	9	19032799	19060079	5	-0.6685	SMALL-LOSS	FOCAL	3	"HAUS6,RRAGA,SAXO1"
TCGA.A6.3808.01A	9	19049651	19379339	55	-0.7017	SMALL-LOSS	FOCAL	5	"DENND4C,HAUS6,PLIN2,RPS6,RRAGA"
TCGA.AG.3909.01A	9	19118281	19126080	5	-0.9331	SMALL-LOSS	FOCAL	1	PLIN2
TCGA.AA.A00N.01A	9	19361792	19450439	15	-1.2945	SMALL-LOSS	FOCAL	3	"ACER2,DENND4C,RPS6"
TCGA.AG.3909.01A	9	19369798	19450439	13	-1.1006	SMALL-LOSS	FOCAL	3	"ACER2,DENND4C,RPS6"
TCGA.AG.4009.01A	9	19424671	19450439	4	-0.7509	SMALL-LOSS	FOCAL	1	ACER2
TCGA.AA.A01C.01A	9	20981396	20982303	2	-1.3122	SMALL-LOSS	FOCAL	1	FOCAD
TCGA.AG.3909.01A	9	21015855	21029271	3	-1.0087	SMALL-LOSS	FOCAL	1	HACD4
TCGA.AA.3527	9	21401192	22283152	303	-0.7294	SMALL-LOSS	FOCAL	6	"CDKN2A,CDKN2B,IFNA1,IFNA8,IFNE,MTAP"
TCGA.AA.3855	9	21801529	22241937	132	-0.5331	SMALL-LOSS	FOCAL	3	"CDKN2A,CDKN2B,MTAP"
TCGA.AG.3909.01A	9	21968148	22451116	9	-0.8211	SMALL-LOSS	FOCAL	3	"CDKN2A,CDKN2B,DMRTA1"
TCGA.AA.3982	9	22168463	26585589	1526	-0.5838	SMALL-LOSS	FOCAL	5	"DMRTA1,ELAVL2,IZUMO3,LOC100506422,TUSC1"
TCGA.AA.3850	9	22204444	26585589	1521	-0.80545	SMALL-LOSS	FOCAL	5	"DMRTA1,ELAVL2,IZUMO3,LOC100506422,TUSC1"
TCGA.AA.3941	9	22204444	26585589	1516	-1.3009	SMALL-LOSS	FOCAL	5	"DMRTA1,ELAVL2,IZUMO3,LOC100506422,TUSC1"
TCGA.DY.A1DF	9	22565071	23860329	484	-0.5323	SMALL-LOSS	FOCAL	1	ELAVL2
TCGA.DM.A28H	9	23099501	23418571	116	-0.6082	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3860	9	23361118	23457650	32	-0.7438	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	9	23664695	23793643	62	-0.8328	SMALL-LOSS	FOCAL	1	ELAVL2
TCGA.A6.6649	9	24514389	24515110	4	-1.2582	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A0XD	9	24514389	24515110	4	-1.2737	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3848	9	25500057	25508134	6	-0.8425	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3666	9	25500057	25545657	16	-0.5897	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3848	9	25544792	25547129	4	-0.8641	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	9	26925774	27062569	28	-0.9178	SMALL-LOSS	FOCAL	3	"IFT74,LRRC19,PLAA"
TCGA.AA.3844	9	27182801	27188861	9	-0.7551	SMALL-LOSS	FOCAL	1	TEK
TCGA.F5.6464	9	27248176	27248643	4	-1.1059	SMALL-LOSS	FOCAL	0	None
TCGA.F5.6465	9	27248176	27248643	4	-1.0382	SMALL-LOSS	FOCAL	0	None
TCGA.AY.5543	9	27248176	27248726	4	-0.6415	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	27524288	27566628	11	-1.269	SMALL-LOSS	FOCAL	3	"C9orf72,IFNK,MOB3B"
TCGA.AG.4009.01A	9	27556531	27566628	7	-0.7168	SMALL-LOSS	FOCAL	1	C9orf72
TCGA.AA.3982	9	27756018	28446526	362	-0.5613	SMALL-LOSS	FOCAL	1	LINGO2
TCGA.AA.3941	9	27759358	28841306	492	-1.3199	SMALL-LOSS	FOCAL	1	LINGO2
TCGA.AA.3850	9	27759358	32208634	1591	-0.87345	SMALL-LOSS	FOCAL	1	LINGO2
TCGA.AG.4021	9	28347678	31720018	1107	-0.7039	SMALL-LOSS	FOCAL	1	LINGO2
TCGA.AY.5543	9	28578947	28725107	55	-0.5704	SMALL-LOSS	FOCAL	1	LINGO2
TCGA.AA.3982	9	28863201	32332854	1138	-0.5219	SMALL-LOSS	FOCAL	1	LINGO2
TCGA.AA.3941	9	28863201	32376617	1158	-1.2836	SMALL-LOSS	FOCAL	1	LINGO2
TCGA.G4.6322	9	29066276	29755124	229	-0.531	SMALL-LOSS	FOCAL	1	LINGO2
TCGA.G4.6322	9	32349943	32957352	257	-0.8528	SMALL-LOSS	FOCAL	6	"ACO1,DDX58,NDUFB6,TAF1L,TMEM215,TOPORS"
TCGA.AA.A02H.01A	9	33026431	33076507	20	-1.227	SMALL-LOSS	FOCAL	2	"DNAJA1,SMU1"
TCGA.AA.A00N.01A	9	33053069	33061999	6	-1.2094	SMALL-LOSS	FOCAL	1	SMU1
TCGA.AA.3982	9	33055470	33056377	4	-0.6769	SMALL-LOSS	FOCAL	1	SMU1
TCGA.AG.3909.01A	9	33255823	33280746	14	-0.9055	SMALL-LOSS	FOCAL	2	"BAG1,CHMP5"
TCGA.AA.3982	9	33283581	33293095	3	-0.6566	SMALL-LOSS	FOCAL	1	NFX1
TCGA.A6.3808.01A	9	33369844	33572300	50	-1.0245	SMALL-LOSS	FOCAL	5	"ANKRD18B,AQP3,AQP7,NFX1,NOL6"
TCGA.AA.A00N.01A	9	33528683	33543120	7	-1.2958	SMALL-LOSS	FOCAL	1	ANKRD18B
TCGA.AA.A010.01A	9	33541088	33886861	26	-0.5228	SMALL-LOSS	FOCAL	3	"ANKRD18B,PRSS3,UBE2R2"
TCGA.AA.3941	9	33650260	33705184	22	-1.0865	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	9	33689727	33705184	9	-0.82345	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3810.01A	9	33996193	34125509	12	-0.6044	SMALL-LOSS	FOCAL	2	"DCAF12,UBAP2"
TCGA.AA.A010.01A	9	34106362	34127187	6	-1.0771	SMALL-LOSS	FOCAL	1	DCAF12
TCGA.AA.A010.01A	9	34458938	34622294	37	-0.9866	SMALL-LOSS	FOCAL	6	"ARID3C,CNTFR,DCTN3,DNAI1,ENHO,RPP25L"
TCGA.AA.A01Q.01A	9	34458938	34662259	60	-0.6102	SMALL-LOSS	FOCAL	10	"ARID3C,CCL27,CNTFR,DCTN3,DNAI1,ENHO,GALT,IL11RA,RPP25L,SIGMAR1"
TCGA.AG.A01L.01A	9	34655173	34659709	5	-0.6239	SMALL-LOSS	FOCAL	1	IL11RA
TCGA.AA.A01Q.01A	9	35059043	35106763	43	-0.5298	SMALL-LOSS	FOCAL	5	"FAM214B,FANCG,PIGO,STOML2,VCP"
TCGA.AG.3909.01A	9	35060288	35107402	42	-0.7956	SMALL-LOSS	FOCAL	5	"FAM214B,FANCG,PIGO,STOML2,VCP"
TCGA.CK.5914.01A	9	35061523	35106763	40	-0.6101	SMALL-LOSS	FOCAL	5	"FAM214B,FANCG,PIGO,STOML2,VCP"
TCGA.AG.4009.01A	9	35095003	35107402	12	-0.7017	SMALL-LOSS	FOCAL	3	"FAM214B,PIGO,STOML2"
TCGA.AA.3870	9	35425088	35448361	6	-0.7403	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	9	35427323	35448361	4	-1.13175	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	9	35555929	35658330	25	-0.516	SMALL-LOSS	FOCAL	6	"CCDC107,CD72,FAM166B,RUSC2,SIT1,TESK1"
TCGA.AG.4009.01A	9	35605585	35615968	11	-0.687	SMALL-LOSS	FOCAL	2	"CD72,TESK1"
TCGA.AA.A00N.01A	9	35605585	35700259	45	-1.01	SMALL-LOSS	FOCAL	8	"ARHGEF39,CA9,CCDC107,CD72,SIT1,TESK1,TLN1,TPM2"
TCGA.AA.A01S	9	35639120	35683881	21	-0.92805	SMALL-LOSS	FOCAL	5	"ARHGEF39,CA9,CCDC107,SIT1,TPM2"
TCGA.AA.A00Q.01A	9	35675777	35699923	16	-0.517	SMALL-LOSS	FOCAL	3	"CA9,TLN1,TPM2"
TCGA.AG.3909.01A	9	35679810	35725524	45	-0.5941	SMALL-LOSS	FOCAL	3	"CA9,TLN1,TPM2"
TCGA.AA.A010.01A	9	35720367	35744560	24	-1.0028	SMALL-LOSS	FOCAL	3	"CREB3,GBA2,TLN1"
TCGA.AA.A01Q.01A	9	35720367	35748301	25	-0.9208	SMALL-LOSS	FOCAL	3	"CREB3,GBA2,TLN1"
TCGA.CK.5914.01A	9	35720367	35825570	66	-0.5477	SMALL-LOSS	FOCAL	9	"CREB3,FAM221B,GBA2,HINT2,MSMP,NPR2,RGP1,SPAG8,TLN1"
TCGA.AG.4009.01A	9	35732722	35799563	30	-1.3137	SMALL-LOSS	FOCAL	5	"CREB3,GBA2,MSMP,NPR2,RGP1"
TCGA.AG.3909.01A	9	35732722	35825570	54	-1.1406	SMALL-LOSS	FOCAL	8	"CREB3,FAM221B,GBA2,HINT2,MSMP,NPR2,RGP1,SPAG8"
TCGA.AA.A010.01A	9	35748301	35753965	12	-0.5329	SMALL-LOSS	FOCAL	3	"GBA2,MSMP,RGP1"
TCGA.AG.4009.01A	9	35799972	35825570	24	-0.7786	SMALL-LOSS	FOCAL	4	"FAM221B,HINT2,NPR2,SPAG8"
TCGA.AA.A01Q.01A	9	35802155	35825570	15	-0.8893	SMALL-LOSS	FOCAL	4	"FAM221B,HINT2,NPR2,SPAG8"
TCGA.AA.A010.01A	9	35810829	35834450	11	-0.841	SMALL-LOSS	FOCAL	4	"FAM221B,HINT2,SPAG8,TMEM8B"
TCGA.AG.A023.01A	9	35821383	35852814	11	-0.6791	SMALL-LOSS	FOCAL	2	"FAM221B,TMEM8B"
TCGA.AA.A00N.01A	9	35834957	35852814	8	-0.6715	SMALL-LOSS	FOCAL	1	TMEM8B
TCGA.AA.3673	9	35996552	35998725	5	-0.9193	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	9	36147736	36198949	7	-0.7565	SMALL-LOSS	FOCAL	3	"CCIN,CLTA,GLIPR2"
TCGA.CK.5914.01A	9	36150807	36198949	5	-0.5636	SMALL-LOSS	FOCAL	3	"CCIN,CLTA,GLIPR2"
TCGA.CK.5914.01A	9	36400002	36630233	9	-0.6574	SMALL-LOSS	FOCAL	2	"MELK,RNF38"
TCGA.AA.A010.01A	9	36599371	36642981	5	-0.9671	SMALL-LOSS	FOCAL	1	MELK
TCGA.AA.3982	9	36672865	36689986	3	-0.8774	SMALL-LOSS	FOCAL	1	MELK
TCGA.AG.4021	9	36963221	37659364	207	-0.7541	SMALL-LOSS	FOCAL	8	"FBXO10,FRMPD1,GRHPR,PAX5,POLR1E,TOMM5,ZBTB5,ZCCHC7"
TCGA.AA.A010.01A	9	36966519	37020591	5	-1.2363	SMALL-LOSS	FOCAL	1	PAX5
TCGA.AA.A01Q.01A	9	37002644	37033909	5	-0.6733	SMALL-LOSS	FOCAL	1	PAX5
TCGA.AG.3909.01A	9	37006446	37126313	5	-1.1781	SMALL-LOSS	FOCAL	2	"PAX5,ZCCHC7"
TCGA.CK.5914.01A	9	37006446	37126313	5	-0.6382	SMALL-LOSS	FOCAL	2	"PAX5,ZCCHC7"
TCGA.AA.3811	9	37179378	37331604	22	-0.5955	SMALL-LOSS	FOCAL	1	ZCCHC7
TCGA.AA.A00N.01A	9	37485981	37501661	11	-1.23	SMALL-LOSS	FOCAL	1	POLR1E
TCGA.CK.5914.01A	9	37486436	37495839	7	-0.6492	SMALL-LOSS	FOCAL	1	POLR1E
TCGA.AG.3909.01A	9	37486436	37501661	10	-0.7681	SMALL-LOSS	FOCAL	1	POLR1E
TCGA.AA.A010.01A	9	37761877	37776251	7	-0.5859	SMALL-LOSS	FOCAL	1	TRMT10B
TCGA.AG.3909.01A	9	37761877	37783874	11	-1.2523	SMALL-LOSS	FOCAL	2	"EXOSC3,TRMT10B"
TCGA.AA.3850	9	37781454	37782966	5	-1.05715	SMALL-LOSS	FOCAL	1	EXOSC3
TCGA.AA.3855	9	37940438	38062426	47	-0.8203	SMALL-LOSS	FOCAL	1	SHB
TCGA.AA.A010.01A	9	38067957	38414055	6	-1.2485	SMALL-LOSS	FOCAL	3	"ALDH1B1,IGFBPL1,SHB"
TCGA.CK.5914.01A	9	38395699	38527922	7	-0.6367	SMALL-LOSS	FOCAL	2	"ALDH1B1,IGFBPL1"
TCGA.AG.3909.01A	9	38395699	39086646	13	-0.5684	SMALL-LOSS	FOCAL	4	"ALDH1B1,ANKRD18A,CNTNAP3,IGFBPL1"
TCGA.AA.A010.01A	9	38577882	38603082	8	-1.0566	SMALL-LOSS	FOCAL	1	ANKRD18A
TCGA.AG.4009.01A	9	39085679	39165881	10	-0.5542	SMALL-LOSS	FOCAL	1	CNTNAP3
TCGA.CK.4952.01A	9	39089868	39877350	17	-1.3087	SMALL-LOSS	FOCAL	2	"CNTNAP3,SPATA31A1"
TCGA.AA.3939.01A	9	42368363	43884907	10	-1.1709	SMALL-LOSS	FOCAL	5	"ANKRD20A2,ANKRD20A3,CNTNAP3B,FOXD4L4,SPATA31A6"
TCGA.F5.6811.01A	9	43768022	43784110	2	-1.3183	SMALL-LOSS	FOCAL	1	CNTNAP3B
TCGA.AA.A00N.01A	9	43915765	67938614	12	-1.2199	SMALL-LOSS	FOCAL	5	"ANKRD20A1,ANKRD20A3,CNTNAP3B,SPATA31A5,SPATA31A7"
TCGA.AG.3726	9	44795318	44830238	3	-1.2576	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3890	9	44795318	44830238	3	-0.9797	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6601	9	44795318	44830238	3	-1.1271	SMALL-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	9	46276812	70061619	16	-0.8613	SMALL-LOSS	FOCAL	8	"ANKRD20A1,ANKRD20A3,ANKRD20A4,CBWD5,CBWD6,FOXD4L6,SPATA31A5,SPATA31A7"
TCGA.A6.6653	9	69492990	69827538	3	-0.8966	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2687	9	71132917	71968654	389	-0.7486	SMALL-LOSS	FOCAL	8	"FAM122A,FAM189A2,FXN,PGM5,PIP5K1B,PRKACG,TJP2,TMEM252"
TCGA.DM.A28F	9	71387999	71694417	158	-0.6369	SMALL-LOSS	FOCAL	4	"FAM122A,FXN,PIP5K1B,PRKACG"
TCGA.AA.A00N.01A	9	71395041	71399482	3	-1.1199	SMALL-LOSS	FOCAL	2	"FAM122A,PIP5K1B"
TCGA.AA.A00N.01A	9	71623273	71861565	25	-0.8728	SMALL-LOSS	FOCAL	4	"FXN,PIP5K1B,PRKACG,TJP2"
TCGA.AG.3909.01A	9	71661254	71861565	20	-0.7581	SMALL-LOSS	FOCAL	2	"FXN,TJP2"
TCGA.AG.4009.01A	9	71827394	71844951	9	-0.6651	SMALL-LOSS	FOCAL	1	TJP2
TCGA.AA.3844	9	71985150	71991317	4	-0.9161	SMALL-LOSS	FOCAL	1	FAM189A2
TCGA.AY.A71X	9	72822972	73088027	53	-0.9495	SMALL-LOSS	FOCAL	3	"KLF9,MAMDC2,SMC5"
TCGA.AA.A00N.01A	9	72873948	72897311	7	-0.8323	SMALL-LOSS	FOCAL	1	SMC5
TCGA.AY.A71X	9	73092459	74104807	430	-0.9606	SMALL-LOSS	FOCAL	1	TRPM3
TCGA.AZ.4681	9	74508099	74765779	60	-0.8746	SMALL-LOSS	FOCAL	4	"ABHD17B,C9orf57,C9orf85,GDA"
TCGA.AA.A00N.01A	9	74526604	74587591	5	-1.0812	SMALL-LOSS	FOCAL	1	C9orf85
TCGA.AG.3909.01A	9	74526604	74587591	4	-0.8352	SMALL-LOSS	FOCAL	1	C9orf85
TCGA.AA.3967.01A	9	74764428	74845966	10	-0.5855	SMALL-LOSS	FOCAL	1	GDA
TCGA.AG.3909.01A	9	74970837	74975506	5	-0.773	SMALL-LOSS	FOCAL	1	ZFAND5
TCGA.AG.4009.01A	9	74970837	74975506	5	-0.6202	SMALL-LOSS	FOCAL	1	ZFAND5
TCGA.CK.5914.01A	9	74970837	74975506	5	-0.6938	SMALL-LOSS	FOCAL	1	ZFAND5
TCGA.AA.3844	9	74972346	74976346	3	-0.9323	SMALL-LOSS	FOCAL	1	ZFAND5
TCGA.AA.3941	9	74972346	74977516	4	-0.619	SMALL-LOSS	FOCAL	1	ZFAND5
TCGA.AG.3909.01A	9	75420248	75450846	6	-1.0728	SMALL-LOSS	FOCAL	1	TMC1
TCGA.AA.3982	9	75741227	77197160	396	-0.5373	SMALL-LOSS	FOCAL	2	"ANXA1,RORB"
TCGA.AA.3850	9	75752352	77175016	387	-0.85855	SMALL-LOSS	FOCAL	2	"ANXA1,RORB"
TCGA.AA.3941	9	75778369	75951275	50	-0.6526	SMALL-LOSS	FOCAL	1	ANXA1
TCGA.AA.3941	9	75990620	76174598	40	-0.5366	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	9	76305195	76321503	9	-1.2064	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	9	77367160	77386577	4	-0.6054	SMALL-LOSS	FOCAL	1	TRPM6
TCGA.CK.5914.01A	9	77448872	77562927	7	-0.548	SMALL-LOSS	FOCAL	2	"C9orf40,TRPM6"
TCGA.AA.A00N.01A	9	77454901	77703528	25	-0.6162	SMALL-LOSS	FOCAL	5	"C9orf40,C9orf41,NMRK1,OSTF1,TRPM6"
TCGA.AA.A010.01A	9	77681615	77697921	7	-1.2733	SMALL-LOSS	FOCAL	1	NMRK1
TCGA.AA.3982	9	78726612	78757166	21	-0.6217	SMALL-LOSS	FOCAL	1	PCSK5
TCGA.AA.A00N.01A	9	79002286	79121456	11	-1.0944	SMALL-LOSS	FOCAL	2	"GCNT1,RFK"
TCGA.AA.3549	9	79324740	79615595	162	-0.672	SMALL-LOSS	FOCAL	1	PRUNE2
TCGA.AA.A00N.01A	9	80645354	82227505	34	-0.6681	SMALL-LOSS	FOCAL	4	"CEP78,GNAQ,PSAT1,TLE4"
TCGA.CK.5914.01A	9	82188561	82190996	3	-1.2784	SMALL-LOSS	FOCAL	1	TLE4
TCGA.AA.3819	9	85451415	85454832	3	-1.2155	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6321	9	86203041	86203300	3	-1.2641	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	86354549	86457105	13	-0.7029	SMALL-LOSS	FOCAL	2	"GKAP1,KIF27"
TCGA.A6.3808.01A	9	86414053	86590310	36	-1.1773	SMALL-LOSS	FOCAL	4	"C9orf64,GKAP1,HNRNPK,KIF27"
TCGA.AG.3909.01A	9	86530159	86593042	19	-1.1391	SMALL-LOSS	FOCAL	3	"C9orf64,HNRNPK,KIF27"
TCGA.CK.5914.01A	9	86530159	86593042	20	-0.905	SMALL-LOSS	FOCAL	3	"C9orf64,HNRNPK,KIF27"
TCGA.AA.A010.01A	9	86554394	86590310	16	-0.5812	SMALL-LOSS	FOCAL	2	"C9orf64,HNRNPK"
TCGA.AA.A00N.01A	9	88557024	88576878	5	-0.8021	SMALL-LOSS	FOCAL	1	NAA35
TCGA.CK.5914.01A	9	88880907	88937192	17	-0.5345	SMALL-LOSS	FOCAL	2	"ISCA1,ZCCHC6"
TCGA.AG.3909.01A	9	88934481	88967563	14	-0.8723	SMALL-LOSS	FOCAL	1	ZCCHC6
TCGA.AA.3870	9	89683060	89684032	4	-0.5952	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	9	89683060	89684171	5	-1.0624	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	9	90311875	90401615	17	-0.544	SMALL-LOSS	FOCAL	2	"CTSL,DAPK1"
TCGA.AG.3891.01A	9	90497797	90538310	15	-0.5166	SMALL-LOSS	FOCAL	2	"SPATA31C1,SPATA31E1"
TCGA.AA.3930.01A	9	90500981	90582339	10	-0.7197	SMALL-LOSS	FOCAL	3	"CDK20,SPATA31C1,SPATA31E1"
TCGA.AA.A00N.01A	9	91262302	91619379	9	-1.1143	SMALL-LOSS	FOCAL	3	"C9orf47,LOC286238,S1PR3"
TCGA.AG.A011.01A	9	91608908	91609596	2	-1.0884	SMALL-LOSS	FOCAL	2	"C9orf47,S1PR3"
TCGA.AA.A01Q.01A	9	92001231	92014136	8	-0.7079	SMALL-LOSS	FOCAL	1	SEMA4D
TCGA.AG.3891.01A	9	92017738	93627268	10	-0.5283	SMALL-LOSS	FOCAL	4	"DIRAS2,GADD45G,SEMA4D,SYK"
TCGA.AA.A010.01A	9	94118112	94172378	4	-1.198	SMALL-LOSS	FOCAL	2	"AUH,NFIL3"
TCGA.AA.A00N.01A	9	94973031	95005449	7	-1.2929	SMALL-LOSS	FOCAL	1	IARS
TCGA.AA.A00N.01A	9	95062122	95107939	17	-1.0918	SMALL-LOSS	FOCAL	2	"CENPP,NOL8"
TCGA.AA.A01Q.01A	9	95374761	95526740	23	-0.5179	SMALL-LOSS	FOCAL	3	"BICD2,CENPP,IPPK"
TCGA.AA.A010.01A	9	95475639	95610059	10	-0.8482	SMALL-LOSS	FOCAL	2	"BICD2,ZNF484"
TCGA.AA.A00L.01A	9	95477396	95526740	7	-0.675	SMALL-LOSS	FOCAL	1	BICD2
TCGA.AA.A01Q.01A	9	95838019	95846767	4	-0.5512	SMALL-LOSS	FOCAL	1	SUSD3
TCGA.AA.A01Q.01A	9	95887143	96021163	13	-0.6857	SMALL-LOSS	FOCAL	2	"NINJ1,WNK2"
TCGA.AG.3906.01A	9	96024119	96097638	15	-0.5728	SMALL-LOSS	FOCAL	2	"C9orf129,WNK2"
TCGA.AA.A010.01A	9	96312832	96339015	8	-1.2372	SMALL-LOSS	FOCAL	2	"FAM120A,PHF2"
TCGA.AA.3930.01A	9	96418752	96439823	13	-0.901	SMALL-LOSS	FOCAL	1	PHF2
TCGA.AG.3906.01A	9	96427930	96439823	7	-0.9252	SMALL-LOSS	FOCAL	1	PHF2
TCGA.CK.5914.01A	9	97693920	97897578	20	-0.582	SMALL-LOSS	FOCAL	2	"C9orf3,FANCC"
TCGA.AA.A00N.01A	9	97767773	97888750	14	-1.1361	SMALL-LOSS	FOCAL	2	"C9orf3,FANCC"
TCGA.AA.A01Q.01A	9	97842999	97863950	5	-0.8775	SMALL-LOSS	FOCAL	2	"C9orf3,FANCC"
TCGA.AA.3858	9	98238378	98256308	9	-0.5447	SMALL-LOSS	FOCAL	1	PTCH1
TCGA.AA.A010.01A	9	98240299	98278661	9	-1.2151	SMALL-LOSS	FOCAL	1	PTCH1
TCGA.AA.3941	9	98697962	98734268	12	-1.0524	SMALL-LOSS	FOCAL	1	ERCC6L2
TCGA.CA.5254	9	98750827	99373712	197	-1.2821	SMALL-LOSS	FOCAL	7	"CDC14B,ERCC6L2,HABP4,HSD17B3,LOC158434,SLC35D2,ZNF367"
TCGA.AA.A010.01A	9	99126691	99233233	13	-1.1251	SMALL-LOSS	FOCAL	3	"HABP4,SLC35D2,ZNF367"
TCGA.AG.4009.01A	9	99150482	99227571	6	-0.8145	SMALL-LOSS	FOCAL	2	"HABP4,ZNF367"
TCGA.CK.5914.01A	9	99314029	99416940	11	-0.544	SMALL-LOSS	FOCAL	2	"AAED1,CDC14B"
TCGA.AG.4009.01A	9	99380740	99413891	5	-0.9646	SMALL-LOSS	FOCAL	2	"AAED1,CDC14B"
TCGA.AA.A00N.01A	9	99589339	99691217	4	-1.2479	SMALL-LOSS	FOCAL	1	ZNF782
TCGA.CK.5914.01A	9	99795184	99961514	8	-0.7662	SMALL-LOSS	FOCAL	1	CTSV
TCGA.DM.A1DA	9	100158459	100161756	3	-1.1053	SMALL-LOSS	FOCAL	0	None
TCGA.QL.A97D	9	100158459	100161756	3	-1.2146	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	100190711	100240672	12	-0.984	SMALL-LOSS	FOCAL	1	TDRD7
TCGA.AA.A010.01A	9	100286444	100353581	9	-1.0401	SMALL-LOSS	FOCAL	1	TMOD1
TCGA.AA.3850	9	100377139	100437486	13	-0.64355	SMALL-LOSS	FOCAL	3	"NCBP1,TSTD2,XPA"
TCGA.AA.3549	9	100823083	101567177	357	-0.6407	SMALL-LOSS	FOCAL	6	"ANKS6,CORO2A,GABBR2,NANS,TBC1D2,TRIM14"
TCGA.AG.4009.01A	9	100839173	100854147	7	-0.7976	SMALL-LOSS	FOCAL	2	"NANS,TRIM14"
TCGA.D5.6535	9	100922619	100927631	8	-0.7954	SMALL-LOSS	FOCAL	1	CORO2A
TCGA.AA.A010.01A	9	100961624	100975359	7	-0.731	SMALL-LOSS	FOCAL	1	TBC1D2
TCGA.AA.A010.01A	9	101539615	101599216	13	-1.1688	SMALL-LOSS	FOCAL	2	"ANKS6,GALNT12"
TCGA.AA.A010.01A	9	101830796	101911450	10	-0.8543	SMALL-LOSS	FOCAL	2	"COL15A1,TGFBR1"
TCGA.AA.A00N.01A	9	101980194	102891873	36	-0.6154	SMALL-LOSS	FOCAL	6	"ALG2,ERP44,INVS,NR4A3,SEC61B,STX17"
TCGA.AG.4009.01A	9	102588967	102677471	8	-0.623	SMALL-LOSS	FOCAL	2	"NR4A3,STX17"
TCGA.AG.4009.01A	9	102814652	102888628	6	-0.5537	SMALL-LOSS	FOCAL	2	"ERP44,INVS"
TCGA.DM.A1D9	9	102853878	103065264	42	-0.8766	SMALL-LOSS	FOCAL	3	"ERP44,INVS,TEX10"
TCGA.AG.3909.01A	9	103102488	103111414	4	-0.9163	SMALL-LOSS	FOCAL	1	TEX10
TCGA.AA.A00N.01A	9	103102488	103212802	8	-1.0598	SMALL-LOSS	FOCAL	3	"MSANTD3,MSANTD3-TMEFF1,TEX10"
TCGA.AG.4009.01A	9	103204174	103260999	4	-0.5709	SMALL-LOSS	FOCAL	3	"MSANTD3,MSANTD3-TMEFF1,TMEFF1"
TCGA.AA.3952	9	105019079	105827814	278	-0.5867	SMALL-LOSS	FOCAL	1	CYLC2
TCGA.AG.3909.01A	9	106857647	106864668	7	-0.8994	SMALL-LOSS	FOCAL	1	SMC2
TCGA.CK.5914.01A	9	106857647	106864668	7	-0.5637	SMALL-LOSS	FOCAL	1	SMC2
TCGA.A6.2681	9	107039663	107331333	114	-0.6776	SMALL-LOSS	FOCAL	3	"OR13C3,OR13C4,OR13F1"
TCGA.AY.A71X	9	107364968	107366118	3	-1.1486	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	9	107475165	107484855	5	-0.9043	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	9	107513199	107535048	9	-0.6223	SMALL-LOSS	FOCAL	2	"NIPSNAP3A,NIPSNAP3B"
TCGA.AG.4009.01A	9	107607703	107646661	6	-0.6345	SMALL-LOSS	FOCAL	1	ABCA1
TCGA.AA.A01Q.01A	9	107620773	107651330	5	-0.53	SMALL-LOSS	FOCAL	1	ABCA1
TCGA.AA.A00N.01A	9	108200468	108308622	15	-0.6338	SMALL-LOSS	FOCAL	1	FSD1L
TCGA.AG.3909.01A	9	108424740	108484797	5	-0.7353	SMALL-LOSS	FOCAL	2	"TAL2,TMEM38B"
TCGA.AA.3844	9	108624393	108626058	3	-0.8191	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	9	108897516	109138184	70	-0.76205	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	109765535	110073919	9	-0.725	SMALL-LOSS	FOCAL	2	"RAD23B,ZNF462"
TCGA.AA.3850	9	110083335	110085232	4	-0.72085	SMALL-LOSS	FOCAL	1	RAD23B
TCGA.AG.3909.01A	9	110248005	110249651	3	-0.9286	SMALL-LOSS	FOCAL	1	KLF4
TCGA.AG.4009.01A	9	110248005	110249651	3	-1.2332	SMALL-LOSS	FOCAL	1	KLF4
TCGA.AA.3850	9	110998006	111023898	12	-0.98295	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6586	9	111272975	111504056	145	-0.6	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	9	111681485	111705936	11	-0.8067	SMALL-LOSS	FOCAL	3	"CTNNAL1,FAM206A,IKBKAP"
TCGA.AA.3850	9	111779246	111809529	11	-0.59885	SMALL-LOSS	FOCAL	1	TMEM245
TCGA.AA.A010.01A	9	111795540	111954496	27	-0.7128	SMALL-LOSS	FOCAL	3	"EPB41L4B,FRRS1L,TMEM245"
TCGA.AA.A00N.01A	9	111868760	111944952	11	-0.6676	SMALL-LOSS	FOCAL	3	"EPB41L4B,FRRS1L,TMEM245"
TCGA.AA.3850	9	112518207	112522274	14	-1.27755	SMALL-LOSS	FOCAL	1	PALM2
TCGA.AY.A71X	9	112824300	112830613	3	-1.0983	SMALL-LOSS	FOCAL	2	"AKAP2,PALM2-AKAP2"
TCGA.AA.3977	9	113300976	113303040	5	-1.2983	SMALL-LOSS	FOCAL	1	SVEP1
TCGA.AA.3989	9	113300976	113303040	5	-1.2597	SMALL-LOSS	FOCAL	1	SVEP1
TCGA.AA.3864	9	113379407	113380892	5	-1.3119	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3989	9	113379407	113380892	5	-1.1491	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	9	113741812	113764328	14	-0.644	SMALL-LOSS	FOCAL	1	LPAR1
TCGA.D5.6535	9	114016033	114039994	6	-1.0764	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	9	114213667	114303955	7	-0.5193	SMALL-LOSS	FOCAL	2	"KIAA0368,ZNF483"
TCGA.CK.5914.01A	9	114235091	114296489	6	-0.5829	SMALL-LOSS	FOCAL	2	"KIAA0368,ZNF483"
TCGA.AA.3509.01A	9	114293101	114375205	20	-0.6132	SMALL-LOSS	FOCAL	2	"PTGR1,ZNF483"
TCGA.CK.5914.01A	9	114355131	114415328	11	-0.9546	SMALL-LOSS	FOCAL	3	"DNAJC25,DNAJC25-GNG10,PTGR1"
TCGA.AG.3909.01A	9	114355131	114429067	8	-1.0638	SMALL-LOSS	FOCAL	4	"DNAJC25,DNAJC25-GNG10,GNG10,PTGR1"
TCGA.AG.4009.01A	9	114409336	114429067	4	-1.319	SMALL-LOSS	FOCAL	3	"DNAJC25,DNAJC25-GNG10,GNG10"
TCGA.AD.A5EK	9	114568615	114568896	3	-0.7751	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	9	114911484	114997051	9	-0.9446	SMALL-LOSS	FOCAL	2	"PTBP3,SUSD1"
TCGA.AA.3850	9	115010306	115014417	4	-1.00235	SMALL-LOSS	FOCAL	1	PTBP3
TCGA.AA.3509.01A	9	115038072	115478663	26	-0.588	SMALL-LOSS	FOCAL	4	"HSDL2,INIP,KIAA1958,PTBP3"
TCGA.A6.3810.01A	9	115060098	115478663	26	-0.6625	SMALL-LOSS	FOCAL	4	"HSDL2,INIP,KIAA1958,PTBP3"
TCGA.AA.A00N.01A	9	115641983	115925032	16	-0.9204	SMALL-LOSS	FOCAL	4	"SLC31A2,SLC46A2,ZFP37,ZNF883"
TCGA.AA.3941	9	115668969	115684233	16	-0.7386	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	9	115781110	115854669	15	-0.61575	SMALL-LOSS	FOCAL	1	ZFP37
TCGA.AA.A010.01A	9	116083728	116131897	10	-0.7903	SMALL-LOSS	FOCAL	2	"BSPRY,WDR31"
TCGA.AA.A00N.01A	9	116091098	116224028	32	-0.8698	SMALL-LOSS	FOCAL	7	"ALAD,BSPRY,C9orf43,HDHD3,POLE3,RGS3,WDR31"
TCGA.AA.3982	9	116784286	116784804	3	-0.6205	SMALL-LOSS	FOCAL	1	ZNF618
TCGA.AG.3891.01A	9	117044487	117064278	10	-0.6156	SMALL-LOSS	FOCAL	1	COL27A1
TCGA.AG.3906.01A	9	117044487	117064278	10	-0.6029	SMALL-LOSS	FOCAL	1	COL27A1
TCGA.AA.3848	9	117093028	117097754	5	-0.8178	SMALL-LOSS	FOCAL	2	"AKNA,ORM2"
TCGA.AA.3860	9	117093109	117098649	5	-1.0159	SMALL-LOSS	FOCAL	2	"AKNA,ORM2"
TCGA.AA.3850	9	117582164	117611912	10	-0.97435	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	9	117589266	117589612	4	-0.9187	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	9	117589266	117592637	5	-0.8967	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	9	117876079	119027075	431	-0.56465	SMALL-LOSS	FOCAL	3	"DEC1,PAPPA,TNC"
TCGA.AA.3844	9	117964823	117967060	4	-1.2601	SMALL-LOSS	FOCAL	1	1-Dec
TCGA.AA.3844	9	118168377	118173997	4	-1.1382	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	9	119402950	119403610	5	-0.716	SMALL-LOSS	FOCAL	1	ASTN2
TCGA.AA.3941	9	120563267	121485159	357	-0.6772	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3726	9	121224730	121226621	4	-1.0007	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	9	123230129	123253538	6	-0.8531	SMALL-LOSS	FOCAL	1	CDK5RAP2
TCGA.AA.A00N.01A	9	123533606	123719525	40	-0.5412	SMALL-LOSS	FOCAL	5	"C5,FBXW2,PHF19,PSMD5,TRAF1"
TCGA.AA.A00A.01A	9	123671456	123675584	3	-0.6712	SMALL-LOSS	FOCAL	1	TRAF1
TCGA.A6.3810.01A	9	123805235	123850578	4	-0.8595	SMALL-LOSS	FOCAL	2	"C5,CNTRL"
TCGA.A6.3808.01A	9	123904331	123937248	22	-1.1318	SMALL-LOSS	FOCAL	1	CNTRL
TCGA.AG.4009.01A	9	123939351	124065137	13	-0.5566	SMALL-LOSS	FOCAL	3	"CNTRL,GSN,RAB14"
TCGA.AA.A00N.01A	9	123943625	124065137	12	-1.0855	SMALL-LOSS	FOCAL	2	"GSN,RAB14"
TCGA.AA.3850	9	123948374	123953922	6	-1.21105	SMALL-LOSS	FOCAL	1	RAB14
TCGA.AA.3982	9	123948374	123960775	7	-1.066	SMALL-LOSS	FOCAL	1	RAB14
TCGA.QL.A97D	9	124047245	124060988	3	-0.9675	SMALL-LOSS	FOCAL	1	GSN
TCGA.EI.6509	9	124072596	124075543	6	-1.0731	SMALL-LOSS	FOCAL	1	GSN
TCGA.AA.A01Q.01A	9	124519240	124545739	14	-1.2865	SMALL-LOSS	FOCAL	1	DAB2IP
TCGA.AA.3850	9	125002245	125002967	3	-1.05255	SMALL-LOSS	FOCAL	1	RBM18
TCGA.AA.A00N.01A	9	125004116	125084756	12	-0.7715	SMALL-LOSS	FOCAL	2	"MRRF,RBM18"
TCGA.AA.3982	9	125054289	125056002	3	-1.3135	SMALL-LOSS	FOCAL	1	MRRF
TCGA.AA.3982	9	125253681	125265579	7	-1.1384	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6322	9	125602101	126689100	267	-0.5825	SMALL-LOSS	FOCAL	8	"CRB2,DENND1A,GPR21,RABGAP1,RC3H2,STRBP,ZBTB26,ZBTB6"
TCGA.CK.5914.01A	9	125611857	125627591	11	-1.3139	SMALL-LOSS	FOCAL	1	RC3H2
TCGA.AA.A010.01A	9	125611857	125652569	17	-0.9432	SMALL-LOSS	FOCAL	1	RC3H2
TCGA.AG.4009.01A	9	125611857	125659521	18	-1.082	SMALL-LOSS	FOCAL	1	RC3H2
TCGA.AA.A00N.01A	9	125637435	125680881	10	-1.2857	SMALL-LOSS	FOCAL	3	"RC3H2,ZBTB26,ZBTB6"
TCGA.AG.3909.01A	9	125639703	125680881	9	-0.8843	SMALL-LOSS	FOCAL	3	"RC3H2,ZBTB26,ZBTB6"
TCGA.AG.4009.01A	9	125827585	125835781	3	-0.7081	SMALL-LOSS	FOCAL	1	RABGAP1
TCGA.AA.A00N.01A	9	125827585	125838861	6	-0.6939	SMALL-LOSS	FOCAL	1	RABGAP1
TCGA.AA.3850	9	125888285	125939927	6	-0.99965	SMALL-LOSS	FOCAL	1	STRBP
TCGA.AG.4009.01A	9	126028344	126137445	8	-0.9498	SMALL-LOSS	FOCAL	2	"CRB2,STRBP"
TCGA.AA.A01Q.01A	9	126125127	126219583	21	-0.5759	SMALL-LOSS	FOCAL	2	"CRB2,DENND1A"
TCGA.AA.A01Q.01A	9	126776198	127115845	14	-0.7327	SMALL-LOSS	FOCAL	3	"LHX2,NEK6,PSMB7"
TCGA.AA.A010.01A	9	127213349	127255272	21	-1.2559	SMALL-LOSS	FOCAL	1	NR5A1
TCGA.AA.A010.01A	9	127289011	127302315	4	-0.9696	SMALL-LOSS	FOCAL	1	NR6A1
TCGA.A6.3808.01A	9	127557272	127644023	26	-0.638	SMALL-LOSS	FOCAL	5	"ARPC5L,GOLGA1,OLFML2A,RPL35,WDR38"
TCGA.AA.A00N.01A	9	127615749	127644023	19	-0.8565	SMALL-LOSS	FOCAL	4	"ARPC5L,GOLGA1,RPL35,WDR38"
TCGA.AG.3909.01A	9	127616453	127639087	12	-0.637	SMALL-LOSS	FOCAL	3	"ARPC5L,RPL35,WDR38"
TCGA.AA.A01Q.01A	9	127620155	127644023	10	-0.6407	SMALL-LOSS	FOCAL	4	"ARPC5L,GOLGA1,RPL35,WDR38"
TCGA.AA.A00N.01A	9	127683361	127715059	9	-0.9745	SMALL-LOSS	FOCAL	2	"GOLGA1,SCAI"
TCGA.AG.3909.01A	9	127688916	127715059	6	-0.5356	SMALL-LOSS	FOCAL	2	"GOLGA1,SCAI"
TCGA.AG.3909.01A	9	127904837	127923076	6	-0.6868	SMALL-LOSS	FOCAL	2	"PPP6C,SCAI"
TCGA.AA.A00N.01A	9	127904837	128230203	53	-0.6211	SMALL-LOSS	FOCAL	6	"GAPVD1,HSPA5,MAPKAP1,PPP6C,RABEPK,SCAI"
TCGA.AG.3909.01A	9	128083663	128104439	11	-0.7568	SMALL-LOSS	FOCAL	1	GAPVD1
TCGA.AA.3811	9	128512347	128692494	38	-0.6402	SMALL-LOSS	FOCAL	1	PBX3
TCGA.AA.3864	9	128574675	128610268	13	-0.8117	SMALL-LOSS	FOCAL	1	PBX3
TCGA.AA.A01Q.01A	9	128725235	129458526	18	-0.6563	SMALL-LOSS	FOCAL	3	"LMX1B,MVB12B,PBX3"
TCGA.5M.AAT5	9	128966108	128982649	7	-0.977	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6170	9	129602799	129659951	18	-1.1109	SMALL-LOSS	FOCAL	1	ZBTB34
TCGA.A6.3810.01A	9	129641688	129645516	3	-1.1	SMALL-LOSS	FOCAL	1	ZBTB34
TCGA.AA.A01Q.01A	9	130209906	130293876	41	-0.5234	SMALL-LOSS	FOCAL	3	"FAM129B,LRSAM1,RPL12"
TCGA.AA.A010.01A	9	130341142	130413860	3	-1.0617	SMALL-LOSS	FOCAL	2	"FAM129B,STXBP1"
TCGA.AA.A010.01A	9	130488481	130501922	11	-0.7363	SMALL-LOSS	FOCAL	3	"SH2D3C,TOR2A,TTC16"
TCGA.AG.4009.01A	9	130489197	130688119	56	-0.5972	SMALL-LOSS	FOCAL	10	"AK1,CDK9,ENG,FPGS,PIP5KL1,SH2D3C,ST6GALNAC4,ST6GALNAC6,TOR2A,TTC16"
TCGA.AA.A01F.01A	9	130928449	130932246	6	-0.7279	SMALL-LOSS	FOCAL	1	CIZ1
TCGA.AG.4009.01A	9	131104471	131196363	24	-0.7215	SMALL-LOSS	FOCAL	3	"CERCAM,SLC27A4,URM1"
TCGA.AA.A010.01A	9	131183145	131196363	8	-0.6967	SMALL-LOSS	FOCAL	1	CERCAM
TCGA.AA.A010.01A	9	131295743	131340341	13	-0.95	SMALL-LOSS	FOCAL	2	"GLE1,SPTAN1"
TCGA.CK.5914.01A	9	131447383	131456835	8	-1.237	SMALL-LOSS	FOCAL	1	SET
TCGA.AA.A01Q.01A	9	131453389	131456835	5	-0.8831	SMALL-LOSS	FOCAL	1	SET
TCGA.AG.4009.01A	9	131453389	131469459	8	-0.8802	SMALL-LOSS	FOCAL	2	"PKN3,SET"
TCGA.AA.A010.01A	9	131465115	131481927	13	-0.6993	SMALL-LOSS	FOCAL	1	PKN3
TCGA.AA.A01Q.01A	9	131493558	131503010	5	-1.0409	SMALL-LOSS	FOCAL	1	ZER1
TCGA.AG.4009.01A	9	131550558	131591314	19	-0.5857	SMALL-LOSS	FOCAL	3	"C9orf114,ENDOG,TBC1D13"
TCGA.AA.A010.01A	9	131553599	131669455	30	-0.8408	SMALL-LOSS	FOCAL	5	"C9orf114,CCBL1,ENDOG,LRRC8A,TBC1D13"
TCGA.AA.A01Q.01A	9	131582971	131591314	10	-0.9197	SMALL-LOSS	FOCAL	2	"C9orf114,ENDOG"
TCGA.AA.A010.01A	9	131756586	131772860	19	-0.802	SMALL-LOSS	FOCAL	2	"NUP188,SH3GLB2"
TCGA.AA.A01F.01A	9	131774490	131823468	13	-0.5701	SMALL-LOSS	FOCAL	2	"FAM73B,SH3GLB2"
TCGA.AA.A010.01A	9	131810654	131821414	4	-0.5282	SMALL-LOSS	FOCAL	1	FAM73B
TCGA.AA.A010.01A	9	131860302	131897042	21	-0.9793	SMALL-LOSS	FOCAL	2	"CRAT,PPP2R4"
TCGA.AA.A01Q.01A	9	132374587	132404117	13	-1.2344	SMALL-LOSS	FOCAL	3	"ASB6,C9orf50,NTMT1"
TCGA.AG.3909.01A	9	132375664	132402790	9	-0.9976	SMALL-LOSS	FOCAL	3	"ASB6,C9orf50,NTMT1"
TCGA.AG.A01W.01A	9	132558950	132568841	9	-0.5398	SMALL-LOSS	FOCAL	1	TOR1B
TCGA.AA.A01Q.01A	9	132565480	132584813	9	-1.0124	SMALL-LOSS	FOCAL	2	"TOR1A,TOR1B"
TCGA.CK.5914.01A	9	132566334	132596919	16	-0.912	SMALL-LOSS	FOCAL	3	"C9orf78,TOR1A,TOR1B"
TCGA.AG.3909.01A	9	132591457	132637537	21	-0.6604	SMALL-LOSS	FOCAL	2	"C9orf78,USP20"
TCGA.AZ.4684.01A	9	132640576	132889737	37	-0.6262	SMALL-LOSS	FOCAL	3	"FNBP1,GPR107,USP20"
TCGA.AA.3862.01A	9	132662654	133498055	103	-0.6039	SMALL-LOSS	FOCAL	6	"ASS1,FNBP1,FUBP3,GPR107,HMCN2,NCS1"
TCGA.AA.3509.01A	9	132665101	132890907	31	-0.7697	SMALL-LOSS	FOCAL	2	"FNBP1,GPR107"
TCGA.AA.A01Q.01A	9	133327564	133376309	14	-0.7209	SMALL-LOSS	FOCAL	1	ASS1
TCGA.AG.3909.01A	9	133339430	133589655	42	-0.6953	SMALL-LOSS	FOCAL	5	"ABL1,ASS1,EXOSC2,FUBP3,PRDM12"
TCGA.AA.A00N.01A	9	133364668	133589655	39	-0.9312	SMALL-LOSS	FOCAL	5	"ABL1,ASS1,EXOSC2,FUBP3,PRDM12"
TCGA.CK.5914.01A	9	133570847	133589655	9	-0.841	SMALL-LOSS	FOCAL	2	"ABL1,EXOSC2"
TCGA.AG.3909.01A	9	133986937	134011259	12	-0.62	SMALL-LOSS	FOCAL	2	"AIF1L,NUP214"
TCGA.AA.A00N.01A	9	133986937	134015918	16	-1.3112	SMALL-LOSS	FOCAL	2	"AIF1L,NUP214"
TCGA.AA.A00F.01A	9	134072551	134073921	3	-0.6267	SMALL-LOSS	FOCAL	1	NUP214
TCGA.AA.A01Q.01A	9	134136227	134183340	5	-0.6079	SMALL-LOSS	FOCAL	2	"FAM78A,PPAPDC3"
TCGA.AG.3909.01A	9	134348857	134371098	20	-0.6139	SMALL-LOSS	FOCAL	1	PRRC2B
TCGA.AA.A00N.01A	9	134367501	134405846	25	-0.9329	SMALL-LOSS	FOCAL	3	"POMT1,PRRC2B,UCK1"
TCGA.AA.A01Q.01A	9	134379559	134405846	22	-0.9528	SMALL-LOSS	FOCAL	2	"POMT1,UCK1"
TCGA.AG.3909.01A	9	134388572	134454836	14	-0.6327	SMALL-LOSS	FOCAL	3	"POMT1,RAPGEF1,UCK1"
TCGA.AA.A01Q.01A	9	135906200	136037668	33	-0.7267	SMALL-LOSS	FOCAL	4	"CEL,GBGT1,GTF3C5,RALGDS"
TCGA.A6.3808.01A	9	135932136	136037668	36	-1.2433	SMALL-LOSS	FOCAL	4	"CEL,GBGT1,GTF3C5,RALGDS"
TCGA.AG.4009.01A	9	135939779	136031209	25	-0.6219	SMALL-LOSS	FOCAL	3	"CEL,GBGT1,RALGDS"
TCGA.AA.A00N.01A	9	135944010	136037668	28	-0.6666	SMALL-LOSS	FOCAL	3	"CEL,GBGT1,RALGDS"
TCGA.AG.3909.01A	9	136028917	136083808	9	-0.607	SMALL-LOSS	FOCAL	2	"GBGT1,OBP2B"
TCGA.AG.3909.01A	9	136131005	136232785	32	-1.0238	SMALL-LOSS	FOCAL	7	"ABO,MED22,RPL7A,SURF1,SURF2,SURF4,SURF6"
TCGA.AA.A010.01A	9	136132744	136137450	5	-0.7119	SMALL-LOSS	FOCAL	1	ABO
TCGA.AA.A00N.01A	9	136132744	136260675	44	-1.2434	SMALL-LOSS	FOCAL	8	"ABO,MED22,RPL7A,STKLD1,SURF1,SURF2,SURF4,SURF6"
TCGA.AA.A010.01A	9	136210928	136262261	34	-1.0246	SMALL-LOSS	FOCAL	6	"MED22,RPL7A,STKLD1,SURF1,SURF2,SURF4"
TCGA.CK.5914.01A	9	136216355	136232785	17	-0.9875	SMALL-LOSS	FOCAL	4	"RPL7A,SURF1,SURF2,SURF4"
TCGA.AA.A01Q.01A	9	136217036	136249574	19	-0.8057	SMALL-LOSS	FOCAL	5	"RPL7A,STKLD1,SURF1,SURF2,SURF4"
TCGA.AA.A01F.01A	9	136220577	136221455	2	-1.2847	SMALL-LOSS	FOCAL	1	SURF1
TCGA.AA.A00N.01A	9	136272867	136288168	9	-1.1566	SMALL-LOSS	FOCAL	2	"ADAMTS13,REXO4"
TCGA.AA.A00A.01A	9	136282700	136304426	12	-0.5411	SMALL-LOSS	FOCAL	2	"ADAMTS13,REXO4"
TCGA.AA.A010.01A	9	136401638	136444105	10	-1.0941	SMALL-LOSS	FOCAL	2	"ADAMTSL2,FAM163B"
TCGA.AA.A00N.01A	9	136577710	136915456	49	-0.5835	SMALL-LOSS	FOCAL	3	"BRD3,SARDH,VAV2"
TCGA.AG.3891.01A	9	136633527	136648573	10	-0.6846	SMALL-LOSS	FOCAL	1	VAV2
TCGA.AA.A010.01A	9	136857185	136915456	10	-1.1152	SMALL-LOSS	FOCAL	2	"BRD3,VAV2"
TCGA.A6.3808.01A	9	136901115	137619061	38	-1.2679	SMALL-LOSS	FOCAL	4	"BRD3,COL5A1,RXRA,WDR5"
TCGA.AA.3861.01A	9	136901115	137622055	37	-0.7655	SMALL-LOSS	FOCAL	4	"BRD3,COL5A1,RXRA,WDR5"
TCGA.AG.4009.01A	9	137005778	137022976	12	-0.6985	SMALL-LOSS	FOCAL	1	WDR5
TCGA.CK.5914.01A	9	137005778	137293489	13	-1.0922	SMALL-LOSS	FOCAL	2	"RXRA,WDR5"
TCGA.AA.A01Q.01A	9	137005778	137313504	17	-1.193	SMALL-LOSS	FOCAL	2	"RXRA,WDR5"
TCGA.AA.A010.01A	9	137019539	137022976	5	-1.3024	SMALL-LOSS	FOCAL	1	WDR5
TCGA.AG.3891.01A	9	137630533	137657457	11	-0.6029	SMALL-LOSS	FOCAL	1	COL5A1
TCGA.AA.A00A.01A	9	137648557	137659097	8	-0.5561	SMALL-LOSS	FOCAL	1	COL5A1
TCGA.AA.A01Q.01A	9	137707347	137733961	14	-1.0052	SMALL-LOSS	FOCAL	1	COL5A1
TCGA.D5.6531	9	137781734	137784867	4	-1.0872	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4015	9	137944419	137960055	3	-1.2242	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	9	137981994	138395371	13	-0.522	SMALL-LOSS	FOCAL	5	"C9orf116,C9orf62,MRPS2,OLFM1,PPP1R26"
TCGA.A6.3808.01A	9	138557474	138679912	38	-1.1688	SMALL-LOSS	FOCAL	3	"KCNT1,LCN9,SOHLH1"
TCGA.AA.A01Q.01A	9	138825199	139118573	30	-0.802	SMALL-LOSS	FOCAL	5	"C9orf69,LHX3,NACC2,QSOX2,UBAC1"
TCGA.A6.3808.01A	9	138845461	139264154	46	-1.1114	SMALL-LOSS	FOCAL	8	"C9orf69,CARD9,DNLZ,GPSM1,LHX3,NACC2,QSOX2,UBAC1"
TCGA.AA.3531	9	138955200	138996532	13	-0.9055	SMALL-LOSS	FOCAL	1	NACC2
TCGA.AA.A010.01A	9	139244018	139278071	24	-0.9751	SMALL-LOSS	FOCAL	4	"CARD9,DNLZ,GPSM1,SNAPC4"
TCGA.AA.A00N.01A	9	139278353	139379879	73	-1.2067	SMALL-LOSS	FOCAL	6	"C9orf163,INPP5E,PMPCA,SDCCAG3,SEC16A,SNAPC4"
TCGA.CK.5914.01A	9	139278353	139379879	73	-0.6593	SMALL-LOSS	FOCAL	6	"C9orf163,INPP5E,PMPCA,SDCCAG3,SEC16A,SNAPC4"
TCGA.AG.A01L.01A	9	139279128	139292704	11	-0.5951	SMALL-LOSS	FOCAL	1	SNAPC4
TCGA.AA.A01F.01A	9	139281888	139286964	5	-0.6577	SMALL-LOSS	FOCAL	1	SNAPC4
TCGA.AG.4009.01A	9	139298467	139313265	17	-1.207	SMALL-LOSS	FOCAL	2	"PMPCA,SDCCAG3"
TCGA.AA.A01Q.01A	9	139311354	139326881	10	-0.5583	SMALL-LOSS	FOCAL	2	"INPP5E,PMPCA"
TCGA.AG.4009.01A	9	139316262	139350055	13	-0.5403	SMALL-LOSS	FOCAL	3	"INPP5E,PMPCA,SEC16A"
TCGA.AG.3909.01A	9	139342237	139393314	23	-0.8998	SMALL-LOSS	FOCAL	3	"C9orf163,NOTCH1,SEC16A"
TCGA.AG.4009.01A	9	139357904	139571005	20	-0.8133	SMALL-LOSS	FOCAL	5	"AGPAT2,C9orf163,EGFL7,NOTCH1,SEC16A"
TCGA.AA.A010.01A	9	139360384	139418132	36	-0.6486	SMALL-LOSS	FOCAL	3	"C9orf163,NOTCH1,SEC16A"
TCGA.AA.A01Q.01A	9	139611977	139640245	11	-0.6537	SMALL-LOSS	FOCAL	3	"FAM69B,LCN10,LCN6"
TCGA.AG.4009.01A	9	139700491	139758218	22	-0.9565	SMALL-LOSS	FOCAL	6	"C9orf172,CCDC183,EDF1,MAMDC4,PHPT1,RABL6"
TCGA.AA.A01Q.01A	9	139743856	139758218	18	-0.8599	SMALL-LOSS	FOCAL	3	"EDF1,MAMDC4,PHPT1"
TCGA.AA.A010.01A	9	139760573	139890883	40	-0.9099	SMALL-LOSS	FOCAL	9	"C8G,C9orf142,CLIC3,EDF1,FBXW5,LCN12,LCNL1,PTGDS,TRAF2"
TCGA.AA.A010.01A	9	140320640	140343804	16	-1.2762	SMALL-LOSS	FOCAL	3	"ENTPD8,NOXA1,NSMF"
TCGA.AA.A010.01A	9	140373459	140378988	4	-1.1123	SMALL-LOSS	FOCAL	1	PNPLA7
TCGA.AA.A01Q.01A	9	140471870	140732818	37	-0.5479	SMALL-LOSS	FOCAL	4	"ARRDC1,DPH7,EHMT1,ZMYND19"
TCGA.AG.4009.01A	9	140477397	140611047	9	-1.1353	SMALL-LOSS	FOCAL	3	"ARRDC1,EHMT1,ZMYND19"
TCGA.AG.3909.01A	9	140646720	140712452	19	-0.9899	SMALL-LOSS	FOCAL	1	EHMT1
TCGA.AA.3982	9	140956337	140960890	3	-0.5279	SMALL-LOSS	FOCAL	1	CACNA1B
TCGA.AA.A00N.01A	9	140990904	141109683	14	-0.5535	SMALL-LOSS	FOCAL	2	"CACNA1B,FAM157B"
TCGA.AZ.4614	9	141013720	141071474	5	-0.7459	SMALL-LOSS	FOCAL	1	CACNA1B
TCGA.AZ.5403	9	141013720	141071474	6	-0.7915	SMALL-LOSS	FOCAL	1	CACNA1B
TCGA.A6.6137	9	141018422	141071474	5	-0.7338	SMALL-LOSS	FOCAL	1	CACNA1B
TCGA.AG.4021	9	141018422	141071474	5	-0.5165	SMALL-LOSS	FOCAL	1	CACNA1B
TCGA.DM.A1D6	9	141018422	141071474	5	-0.8328	SMALL-LOSS	FOCAL	1	CACNA1B
TCGA.DY.A1DD	9	141018422	141071474	5	-0.5496	SMALL-LOSS	FOCAL	1	CACNA1B
TCGA.AG.3909.01A	10	93180	93966	2	-1.1879	SMALL-LOSS	FOCAL	1	TUBB8
TCGA.AA.A00N.01A	10	93180	95053	4	-0.6446	SMALL-LOSS	FOCAL	1	TUBB8
TCGA.DC.4749	10	135655	690038	159	-0.5594	SMALL-LOSS	FOCAL	2	"DIP2C,ZMYND11"
TCGA.DY.A1DD	10	135655	1687170	558	-1.0767	SMALL-LOSS	FOCAL	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.A6.2672	10	135655	1753560	612	-0.5267	SMALL-LOSS	FOCAL	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AA.3952	10	135655	1963822	742	-0.7149	SMALL-LOSS	FOCAL	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.A6.5661	10	135655	2412970	1002	-0.6578	SMALL-LOSS	FOCAL	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AG.3726	10	135655	2773509	1220	-0.7227	SMALL-LOSS	FOCAL	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AA.3664	10	135655	2953046	1325	-0.8552	SMALL-LOSS	FOCAL	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.D5.6535	10	135655	2991856	1364	-1.0641	SMALL-LOSS	FOCAL	8	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,WDR37,ZMYND11"
TCGA.AM.5820	10	135655	3772423	1783	-0.6196	SMALL-LOSS	FOCAL	10	"ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.AA.3844	10	219331	274223	8	-0.6399	SMALL-LOSS	FOCAL	1	ZMYND11
TCGA.AA.A00N.01A	10	329185	429939	21	-0.9589	SMALL-LOSS	FOCAL	1	DIP2C
TCGA.DM.A1D6	10	468069	468598	4	-0.8565	SMALL-LOSS	FOCAL	1	DIP2C
TCGA.A6.6653	10	514137	550618	20	-0.7807	SMALL-LOSS	FOCAL	1	DIP2C
TCGA.AA.3509.01A	10	1038417	1062977	14	-0.8172	SMALL-LOSS	FOCAL	1	GTPBP4
TCGA.AG.4008	10	1138619	1295704	78	-0.6261	SMALL-LOSS	FOCAL	2	"ADARB2,WDR37"
TCGA.AA.3967.01A	10	1142058	3167240	33	-0.658	SMALL-LOSS	FOCAL	3	"ADARB2,PFKP,WDR37"
TCGA.AG.3891.01A	10	1229106	3155522	25	-0.6431	SMALL-LOSS	FOCAL	2	"ADARB2,PFKP"
TCGA.AA.3516	10	1464891	1511950	23	-0.5272	SMALL-LOSS	FOCAL	1	ADARB2
TCGA.CM.5862	10	1752020	1760189	9	-0.9213	SMALL-LOSS	FOCAL	1	ADARB2
TCGA.G4.6299	10	2357511	2357701	3	-0.7052	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D9	10	2562266	2574802	4	-1.2996	SMALL-LOSS	FOCAL	0	None
TCGA.QL.A97D	10	2891248	2892302	3	-0.9916	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	10	3654199	3662634	8	-1.06085	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	10	3654199	3662634	8	-0.9923	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01T	10	4839054	4848756	15	-0.8079	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	10	5442766	5496200	11	-0.866	SMALL-LOSS	FOCAL	2	"NET1,TUBAL3"
TCGA.AG.3909.01A	10	5442766	5690890	19	-1.267	SMALL-LOSS	FOCAL	5	"ASB13,CALML3,CALML5,NET1,TUBAL3"
TCGA.AA.A00N.01A	10	5836801	5944946	16	-0.9872	SMALL-LOSS	FOCAL	3	"ANKRD16,FBXO18,GDI2"
TCGA.AA.A010.01A	10	5920045	5957319	17	-0.99	SMALL-LOSS	FOCAL	2	"ANKRD16,FBXO18"
TCGA.AG.4009.01A	10	5924969	5952902	10	-0.7521	SMALL-LOSS	FOCAL	2	"ANKRD16,FBXO18"
TCGA.AA.A010.01A	10	6138981	6157141	10	-0.7043	SMALL-LOSS	FOCAL	1	RBM17
TCGA.AA.A00N.01A	10	6138981	6274785	26	-0.5863	SMALL-LOSS	FOCAL	2	"PFKFB3,RBM17"
TCGA.AG.3909.01A	10	6138981	6274785	25	-0.8186	SMALL-LOSS	FOCAL	2	"PFKFB3,RBM17"
TCGA.AA.A01Q.01A	10	6245165	6274785	13	-0.9066	SMALL-LOSS	FOCAL	1	PFKFB3
TCGA.AA.A010.01A	10	6262594	6274785	9	-0.8974	SMALL-LOSS	FOCAL	1	PFKFB3
TCGA.AM.5820	10	6404209	11572440	2554	-0.7682	SMALL-LOSS	FOCAL	10	"ATP5C1,CELF2,GATA3,ITIH2,ITIH5,KIN,PRKCQ,SFMBT2,TAF3,USP6NL"
TCGA.F5.6813	10	6892240	7232268	230	-0.534	SMALL-LOSS	FOCAL	1	SFMBT2
TCGA.AA.3531	10	6939943	7253460	203	-0.9426	SMALL-LOSS	FOCAL	1	SFMBT2
TCGA.AA.3977	10	6940547	6942101	6	-0.864	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3883	10	7122410	7124688	3	-1.301	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	10	7212878	7285478	12	-0.619	SMALL-LOSS	FOCAL	1	SFMBT2
TCGA.AA.3850	10	7528720	7530617	5	-0.67565	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	10	7807965	7830102	9	-0.8288	SMALL-LOSS	FOCAL	2	"ATP5C1,KIN"
TCGA.AA.A00N.01A	10	7816738	7849524	15	-1.2013	SMALL-LOSS	FOCAL	2	"ATP5C1,KIN"
TCGA.AA.A010.01A	10	8006745	11059992	13	-1.1589	SMALL-LOSS	FOCAL	3	"CELF2,GATA3,TAF3"
TCGA.AG.4009.01A	10	8055662	11207412	8	-0.6347	SMALL-LOSS	FOCAL	3	"CELF2,GATA3,TAF3"
TCGA.AA.A01T	10	8252398	9967518	792	-0.7692	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	10	9085625	9090224	5	-1.0661	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3973	10	9088830	9090224	4	-0.9226	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	10	9426794	9617014	56	-0.6073	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	10	9513092	9516862	3	-0.9509	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3845	10	9795230	9795832	3	-0.8206	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	10	10777338	10779686	6	-1.0657	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3845	10	11196485	11197076	3	-0.9691	SMALL-LOSS	FOCAL	1	CELF2
TCGA.AG.3909.01A	10	12251908	12291528	10	-1.0376	SMALL-LOSS	FOCAL	1	CDC123
TCGA.AA.3973	10	12581487	12584208	8	-0.5323	SMALL-LOSS	FOCAL	1	CAMK1D
TCGA.DY.A1DG	10	12612337	12658888	29	-0.521	SMALL-LOSS	FOCAL	1	CAMK1D
TCGA.CK.5914.01A	10	13040291	13222452	21	-0.6407	SMALL-LOSS	FOCAL	3	"CCDC3,MCM10,OPTN"
TCGA.AA.3524	10	13158363	14026869	467	-0.8326	SMALL-LOSS	FOCAL	8	"BEND7,FRMD4A,MCM10,OPTN,PHYH,PRPF18,SEPHS1,UCMA"
TCGA.AA.A010.01A	10	13174020	13228123	11	-0.8563	SMALL-LOSS	FOCAL	2	"MCM10,OPTN"
TCGA.AA.A01F.01A	10	13275509	13276131	2	-0.7025	SMALL-LOSS	FOCAL	1	UCMA
TCGA.AA.A00N.01A	10	13333796	13494499	18	-1.0381	SMALL-LOSS	FOCAL	3	"BEND7,PHYH,SEPHS1"
TCGA.AG.4009.01A	10	13672220	13716870	10	-0.5825	SMALL-LOSS	FOCAL	2	"FRMD4A,PRPF18"
TCGA.AA.A00N.01A	10	13693848	13712359	8	-0.8199	SMALL-LOSS	FOCAL	1	FRMD4A
TCGA.AA.A01Q.01A	10	13693848	13712359	8	-0.6082	SMALL-LOSS	FOCAL	1	FRMD4A
TCGA.AF.3914.01A	10	13696374	13702279	4	-1.2887	SMALL-LOSS	FOCAL	1	FRMD4A
TCGA.AM.5820	10	14106483	14108710	4	-1.1761	SMALL-LOSS	FOCAL	1	FRMD4A
TCGA.AA.A00N.01A	10	14867478	14941529	21	-1.0399	SMALL-LOSS	FOCAL	3	"CDNF,HSPA14,SUV39H2"
TCGA.AA.3844	10	14876526	14914586	5	-0.7689	SMALL-LOSS	FOCAL	2	"CDNF,HSPA14"
TCGA.AG.3909.01A	10	14881863	14923452	12	-1.3027	SMALL-LOSS	FOCAL	2	"HSPA14,SUV39H2"
TCGA.AG.4009.01A	10	14891669	14944358	14	-0.5584	SMALL-LOSS	FOCAL	2	"HSPA14,SUV39H2"
TCGA.AA.A00N.01A	10	15113745	15151664	9	-1.1674	SMALL-LOSS	FOCAL	5	"ACBD7,C10orf111,NMT2,OLAH,RPP38"
TCGA.AG.3909.01A	10	15120509	15145327	4	-1.0587	SMALL-LOSS	FOCAL	3	"ACBD7,C10orf111,RPP38"
TCGA.A6.A567	10	15239497	17523040	1012	-0.7277	SMALL-LOSS	FOCAL	10	"C1QL3,CUBN,FAM171A1,FAM188A,ITGA8,PTER,RSU1,ST8SIA6,TRDMT1,VIM"
TCGA.AA.3850	10	15646224	15649998	7	-1.27755	SMALL-LOSS	FOCAL	1	ITGA8
TCGA.AA.3681	10	15940272	17201613	561	-0.5492	SMALL-LOSS	FOCAL	5	"C1QL3,CUBN,PTER,RSU1,TRDMT1"
TCGA.AG.3909.01A	10	16546967	16556485	3	-1.0222	SMALL-LOSS	FOCAL	2	"C1QL3,PTER"
TCGA.AG.4009.01A	10	16553028	16556485	2	-0.9629	SMALL-LOSS	FOCAL	2	"C1QL3,PTER"
TCGA.AG.A01W.01A	10	16566344	17036348	50	-0.7874	SMALL-LOSS	FOCAL	2	"CUBN,RSU1"
TCGA.CK.5914.01A	10	17242441	17279213	10	-0.7171	SMALL-LOSS	FOCAL	2	"TRDMT1,VIM"
TCGA.AG.3909.01A	10	17272569	17279213	7	-1.0665	SMALL-LOSS	FOCAL	1	VIM
TCGA.AF.3914.01A	10	17276685	17277121	2	-0.9992	SMALL-LOSS	FOCAL	1	VIM
TCGA.AG.A01W.01A	10	17315563	17319155	6	-0.7389	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3989	10	17395499	17400532	5	-1.1323	SMALL-LOSS	FOCAL	1	ST8SIA6
TCGA.EI.6508	10	18636528	18807643	108	-0.697	SMALL-LOSS	FOCAL	1	CACNB2
TCGA.D5.6532	10	18866867	18986051	37	-0.8131	SMALL-LOSS	FOCAL	2	"ARL5B,NSUN6"
TCGA.AG.A01W.01A	10	18874827	18914852	4	-0.6878	SMALL-LOSS	FOCAL	1	NSUN6
TCGA.CK.5914.01A	10	18903387	18964021	11	-0.5245	SMALL-LOSS	FOCAL	2	"ARL5B,NSUN6"
TCGA.AA.A00N.01A	10	18931343	18964021	9	-0.8598	SMALL-LOSS	FOCAL	2	"ARL5B,NSUN6"
TCGA.AG.3909.01A	10	18931343	18964021	9	-0.5494	SMALL-LOSS	FOCAL	2	"ARL5B,NSUN6"
TCGA.AA.3872	10	19366449	19367006	3	-0.9688	SMALL-LOSS	FOCAL	1	MALRD1
TCGA.EI.6513	10	20746199	21512498	374	-0.7804	SMALL-LOSS	FOCAL	2	"C10orf113,NEBL"
TCGA.CK.5914.01A	10	21461263	21827705	9	-1.0784	SMALL-LOSS	FOCAL	4	"CASC10,MLLT10,NEBL,SKIDA1"
TCGA.AA.A00N.01A	10	21461263	21845564	10	-1.2325	SMALL-LOSS	FOCAL	4	"CASC10,MLLT10,NEBL,SKIDA1"
TCGA.AF.3914.01A	10	21462627	21827705	7	-0.6459	SMALL-LOSS	FOCAL	4	"CASC10,MLLT10,NEBL,SKIDA1"
TCGA.AF.3914.01A	10	22606766	22617477	7	-1.3109	SMALL-LOSS	FOCAL	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AA.A01K.01A	10	22606766	22618232	9	-1.1449	SMALL-LOSS	FOCAL	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AA.A02E.01A	10	22606766	22618232	9	-1.1331	SMALL-LOSS	FOCAL	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AA.A01Q.01A	10	22607516	22618232	8	-0.8682	SMALL-LOSS	FOCAL	3	"BMI1,COMMD3,COMMD3-BMI1"
TCGA.AA.A010.01A	10	22634463	22680631	7	-0.8737	SMALL-LOSS	FOCAL	1	SPAG6
TCGA.AA.A01Q.01A	10	23481433	23729035	3	-0.828	SMALL-LOSS	FOCAL	3	"C10orf67,OTUD1,PTF1A"
TCGA.AA.A01T	10	23489751	25776638	801	-0.7609	SMALL-LOSS	FOCAL	8	"ARHGAP21,C10orf67,ENKUR,GPR158,KIAA1217,OTUD1,PRTFDC1,THNSL1"
TCGA.A6.6653	10	23595093	23661290	16	-0.7709	SMALL-LOSS	FOCAL	1	C10orf67
TCGA.AA.3941	10	25522206	25716070	68	-0.9556	SMALL-LOSS	FOCAL	1	GPR158
TCGA.AA.3811	10	25621329	25670434	20	-1.017	SMALL-LOSS	FOCAL	1	GPR158
TCGA.AA.A00N.01A	10	26482083	26518544	10	-1.2059	SMALL-LOSS	FOCAL	2	"GAD2,MYO3A"
TCGA.AA.A01Q.01A	10	26507933	26518544	4	-0.6086	SMALL-LOSS	FOCAL	1	GAD2
TCGA.QL.A97D	10	26687788	26689766	3	-1.1757	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	10	26848982	27012708	9	-0.9677	SMALL-LOSS	FOCAL	2	"APBB1IP,PDSS1"
TCGA.AA.A00N.01A	10	27367954	27382577	6	-1.2708	SMALL-LOSS	FOCAL	1	ANKRD26
TCGA.AG.3909.01A	10	27367954	27409312	13	-0.6327	SMALL-LOSS	FOCAL	2	"ANKRD26,YME1L1"
TCGA.AA.A00N.01A	10	27388996	27431279	16	-0.5796	SMALL-LOSS	FOCAL	2	"ANKRD26,YME1L1"
TCGA.AG.3909.01A	10	27431279	27458846	12	-0.7732	SMALL-LOSS	FOCAL	2	"MASTL,YME1L1"
TCGA.CK.5914.01A	10	27431279	27458846	14	-0.6795	SMALL-LOSS	FOCAL	2	"MASTL,YME1L1"
TCGA.A6.3808.01A	10	27431279	27700690	33	-1.2218	SMALL-LOSS	FOCAL	4	"ACBD5,MASTL,PTCHD3,YME1L1"
TCGA.AA.A00N.01A	10	27434309	27462020	14	-1.3145	SMALL-LOSS	FOCAL	2	"MASTL,YME1L1"
TCGA.AA.A01I.01A	10	27469831	27523974	14	-1.086	SMALL-LOSS	FOCAL	2	"ACBD5,MASTL"
TCGA.AA.A010.01A	10	27504424	27692091	9	-0.6032	SMALL-LOSS	FOCAL	2	"ACBD5,PTCHD3"
TCGA.AA.A00N.01A	10	27508602	27700690	8	-0.9091	SMALL-LOSS	FOCAL	2	"ACBD5,PTCHD3"
TCGA.AG.3909.01A	10	27512051	28030223	19	-0.6153	SMALL-LOSS	FOCAL	4	"ACBD5,MKX,PTCHD3,RAB18"
TCGA.AG.A016.01A	10	27793556	27793856	2	-0.9534	SMALL-LOSS	FOCAL	1	RAB18
TCGA.AA.3850	10	28295540	28341782	14	-0.77725	SMALL-LOSS	FOCAL	1	MPP7
TCGA.BM.6198	10	29644571	29671013	9	-0.53505	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3556	10	30088949	30093280	8	-0.6385	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01L.01A	10	30736669	30739148	2	-1.1201	SMALL-LOSS	FOCAL	1	MAP3K8
TCGA.D5.6536	10	30862179	30871433	3	-1.2842	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	10	31552057	31863479	54	-0.78795	SMALL-LOSS	FOCAL	1	ZEB1
TCGA.AA.3941	10	31694623	31863479	35	-1.1107	SMALL-LOSS	FOCAL	1	ZEB1
TCGA.AA.3519	10	32396399	32524897	63	-0.9333	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	10	32635639	32832184	13	-0.7498	SMALL-LOSS	FOCAL	2	"CCDC7,EPC1"
TCGA.A6.A567	10	32693852	32697756	3	-0.8386	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	10	32740542	32745119	3	-0.6055	SMALL-LOSS	FOCAL	1	CCDC7
TCGA.AA.3850	10	32894439	33173850	45	-0.71365	SMALL-LOSS	FOCAL	1	CCDC7
TCGA.EI.6508	10	34040292	34047974	4	-1.1108	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	10	34619993	34648952	8	-0.7918	SMALL-LOSS	FOCAL	1	PARD3
TCGA.AG.3909.01A	10	34625058	34648952	7	-0.8901	SMALL-LOSS	FOCAL	1	PARD3
TCGA.CK.5914.01A	10	35854913	37425471	14	-0.5672	SMALL-LOSS	FOCAL	4	"ANKRD30A,CCNY,FZD8,GJD4"
TCGA.AA.A00L.01A	10	35894431	36812297	6	-0.6581	SMALL-LOSS	FOCAL	2	"FZD8,GJD4"
TCGA.AA.A00N.01A	10	35894431	37433857	14	-1.0892	SMALL-LOSS	FOCAL	3	"ANKRD30A,FZD8,GJD4"
TCGA.AG.3890	10	36037465	36124111	46	-0.5304	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	10	36811751	37422880	7	-1.2376	SMALL-LOSS	FOCAL	1	ANKRD30A
TCGA.D5.6922	10	37323785	39050889	268	-0.9506	SMALL-LOSS	FOCAL	6	"ANKRD30A,MTRNR2L7,ZNF248,ZNF25,ZNF33A,ZNF37A"
TCGA.DM.A1HA	10	42636466	43475415	163	-0.8702	SMALL-LOSS	FOCAL	2	"BMS1,ZNF33B"
TCGA.AA.3861.01A	10	43285720	43315720	13	-0.7789	SMALL-LOSS	FOCAL	1	BMS1
TCGA.AA.A01Q.01A	10	43325658	43623513	21	-0.524	SMALL-LOSS	FOCAL	2	"BMS1,RET"
TCGA.AA.A010.01A	10	43611984	43678646	16	-1.1656	SMALL-LOSS	FOCAL	2	"CSGALNACT2,RET"
TCGA.AA.3939.01A	10	43691625	43701330	9	-0.8663	SMALL-LOSS	FOCAL	1	RASGEF1A
TCGA.AG.3909.01A	10	44868687	45798845	23	-0.565	SMALL-LOSS	FOCAL	7	"C10orf10,C10orf25,CXCL12,OR13A1,RASSF4,TMEM72,ZNF22"
TCGA.AA.3977	10	45221504	45227647	3	-1.0735	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5820	10	45249393	45340067	37	-0.5224	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	10	45465580	45938854	25	-0.9268	SMALL-LOSS	FOCAL	6	"ALOX5,C10orf10,C10orf25,OR13A1,RASSF4,ZNF22"
TCGA.AA.A00N.01A	10	45465580	46242005	54	-0.8029	SMALL-LOSS	FOCAL	9	"ALOX5,C10orf10,C10orf25,FAM21C,MARCH8,OR13A1,RASSF4,ZFAND4,ZNF22"
TCGA.AA.3986	10	46691158	47546129	19	-0.6569	SMALL-LOSS	FOCAL	8	"AGAP9,ANXA8,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R,SYT15"
TCGA.D5.6537	10	46691158	47587330	24	-0.6297	SMALL-LOSS	FOCAL	8	"AGAP9,ANXA8,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R,SYT15"
TCGA.AA.A00N.01A	10	46918526	47087642	15	-0.7462	SMALL-LOSS	FOCAL	4	"CH17-360D5.1,GPRIN2,NPY4R,SYT15"
TCGA.AG.3909.01A	10	46918526	47087642	13	-1.0842	SMALL-LOSS	FOCAL	4	"CH17-360D5.1,GPRIN2,NPY4R,SYT15"
TCGA.AA.A010.01A	10	46923557	46967389	9	-0.7067	SMALL-LOSS	FOCAL	1	SYT15
TCGA.G4.6315	10	46943376	47112546	13	-0.7859	SMALL-LOSS	FOCAL	4	"CH17-360D5.1,GPRIN2,NPY4R,SYT15"
TCGA.D5.6924	10	46943376	47117348	15	-0.6411	SMALL-LOSS	FOCAL	4	"CH17-360D5.1,GPRIN2,NPY4R,SYT15"
TCGA.AG.4009.01A	10	46959894	47087642	11	-0.9986	SMALL-LOSS	FOCAL	4	"CH17-360D5.1,GPRIN2,NPY4R,SYT15"
TCGA.AZ.6606	10	46977565	47113089	13	-1.1056	SMALL-LOSS	FOCAL	3	"CH17-360D5.1,GPRIN2,NPY4R"
TCGA.EI.6508	10	46977565	47136995	15	-0.6344	SMALL-LOSS	FOCAL	3	"CH17-360D5.1,GPRIN2,NPY4R"
TCGA.AA.3989	10	46977565	47546322	18	-0.9316	SMALL-LOSS	FOCAL	7	"AGAP9,ANXA8,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R"
TCGA.AG.3583	10	46995473	47129683	13	-0.8947	SMALL-LOSS	FOCAL	3	"CH17-360D5.1,GPRIN2,NPY4R"
TCGA.CA.6715	10	47006368	47587330	20	-0.515	SMALL-LOSS	FOCAL	6	"AGAP9,ANXA8,CH17-360D5.1,FAM25C,FAM25G,NPY4R"
TCGA.AA.3833	10	47094304	47099687	4	-1.2822	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3678	10	47094304	47117348	9	-0.8922	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6922	10	47099687	47136995	8	-0.7106	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4684.01A	10	47751093	47948697	21	-0.7616	SMALL-LOSS	FOCAL	1	ANXA8L1
TCGA.AA.A02K.01A	10	47903092	47915835	3	-0.7352	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3810.01A	10	48003912	48032954	7	-1.0537	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	10	48003912	49376590	28	-0.9196	SMALL-LOSS	FOCAL	10	"AGAP9,ANXA8,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,PTPN20,RBP3,ZNF488"
TCGA.AA.3980.01A	10	48370506	48428672	14	-0.7077	SMALL-LOSS	FOCAL	4	"GDF10,GDF2,RBP3,ZNF488"
TCGA.AA.A00N.01A	10	49628181	49667698	15	-0.6437	SMALL-LOSS	FOCAL	2	"ARHGAP22,MAPK8"
TCGA.AA.A01Q.01A	10	49661310	49662069	2	-1.241	SMALL-LOSS	FOCAL	1	ARHGAP22
TCGA.AG.4009.01A	10	49661310	49667698	3	-0.8752	SMALL-LOSS	FOCAL	1	ARHGAP22
TCGA.AG.3909.01A	10	50530562	50599794	7	-0.7866	SMALL-LOSS	FOCAL	2	"C10orf71,DRGX"
TCGA.AA.A00N.01A	10	50713878	50835632	16	-0.5486	SMALL-LOSS	FOCAL	5	"CHAT,ERCC6,ERCC6-PGBD3,PGBD3,SLC18A3"
TCGA.AG.3909.01A	10	50736416	50827770	8	-0.8598	SMALL-LOSS	FOCAL	4	"CHAT,ERCC6,ERCC6-PGBD3,SLC18A3"
TCGA.AG.4009.01A	10	50818786	50830088	7	-0.7697	SMALL-LOSS	FOCAL	2	"CHAT,SLC18A3"
TCGA.AG.3891.01A	10	50943236	50960637	17	-0.5843	SMALL-LOSS	FOCAL	1	OGDHL
TCGA.AG.4009.01A	10	50960637	50966383	3	-0.7911	SMALL-LOSS	FOCAL	1	OGDHL
TCGA.A6.3808.01A	10	51065331	51592466	29	-0.9453	SMALL-LOSS	FOCAL	5	"MSMB,NCOA4,PARG,TIMM23,TIMM23B"
TCGA.AG.A020	10	51496795	51586513	24	-0.8013	SMALL-LOSS	FOCAL	3	"MSMB,NCOA4,TIMM23B"
TCGA.AG.3909.01A	10	51549500	51843782	18	-0.6342	SMALL-LOSS	FOCAL	6	"AGAP6,FAM21A,MSMB,NCOA4,TIMM23,TIMM23B"
TCGA.AA.A00N.01A	10	51549500	51851868	25	-0.9896	SMALL-LOSS	FOCAL	6	"AGAP6,FAM21A,MSMB,NCOA4,TIMM23,TIMM23B"
TCGA.AZ.4684.01A	10	51623072	51893150	21	-0.9886	SMALL-LOSS	FOCAL	4	"AGAP6,FAM21A,TIMM23,TIMM23B"
TCGA.DM.A28M.01A	10	51838370	51994136	24	-0.7743	SMALL-LOSS	FOCAL	2	"ASAH2,FAM21A"
TCGA.AA.A00F.01A	10	52002913	52070982	6	-0.5818	SMALL-LOSS	FOCAL	2	"ASAH2,SGMS1"
TCGA.AA.3982	10	52396758	55963945	1446	-0.6149	SMALL-LOSS	FOCAL	7	"A1CF,ASAH2B,CSTF2T,DKK1,MBL2,PCDH15,PRKG1"
TCGA.AA.3850	10	52480742	57955790	2045	-0.60355	SMALL-LOSS	FOCAL	8	"A1CF,ASAH2B,CSTF2T,DKK1,MBL2,MTRNR2L5,PCDH15,PRKG1"
TCGA.AA.3867	10	52643178	52711580	26	-0.5955	SMALL-LOSS	FOCAL	1	A1CF
TCGA.EF.5830	10	52643178	52974560	136	-0.6856	SMALL-LOSS	FOCAL	2	"A1CF,PRKG1"
TCGA.D5.6932	10	52734995	53680084	389	-0.5833	SMALL-LOSS	FOCAL	2	"CSTF2T,PRKG1"
TCGA.AA.3549	10	52806790	53366179	260	-0.6959	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.AA.3693	10	52846223	52992632	55	-0.8682	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.AG.A026	10	52887758	53000644	34	-0.5771	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.DM.A28H	10	52938912	53442558	213	-0.6276	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.AA.3531	10	53042297	53237440	93	-0.8092	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.DM.A28F	10	53077412	53365207	151	-0.5198	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.A6.5666	10	53109722	53189076	31	-1.2573	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.D5.6931	10	53159075	53186702	8	-0.9701	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.AG.3583	10	53193249	53313425	75	-0.5925	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.CM.6170	10	53205075	53211448	3	-1.2762	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.AG.3583	10	53314408	53370446	33	-0.9004	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.D5.6931	10	53336234	53346155	5	-0.9605	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.AG.3883	10	53354574	53694447	115	-0.6702	SMALL-LOSS	FOCAL	2	"CSTF2T,PRKG1"
TCGA.DM.A1DB	10	53366179	53602189	62	-0.8249	SMALL-LOSS	FOCAL	2	"CSTF2T,PRKG1"
TCGA.D5.6535	10	53416511	57573028	1553	-0.9722	SMALL-LOSS	FOCAL	6	"CSTF2T,DKK1,MBL2,MTRNR2L5,PCDH15,PRKG1"
TCGA.AG.A026	10	53538077	53620399	21	-0.5275	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.DM.A28F	10	53657647	53695203	18	-0.5294	SMALL-LOSS	FOCAL	1	PRKG1
TCGA.D5.6932	10	53804711	54147788	143	-0.6106	SMALL-LOSS	FOCAL	2	"DKK1,PRKG1"
TCGA.AG.3909.01A	10	54076003	55755352	25	-0.6667	SMALL-LOSS	FOCAL	3	"DKK1,MBL2,PCDH15"
TCGA.AA.A01T	10	54415110	58161892	1350	-0.7819	SMALL-LOSS	FOCAL	4	"MBL2,MTRNR2L5,PCDH15,ZWINT"
TCGA.AA.3867	10	55680462	57560315	609	-0.5731	SMALL-LOSS	FOCAL	2	"MTRNR2L5,PCDH15"
TCGA.AA.3844	10	55680462	59259760	1161	-0.6906	SMALL-LOSS	FOCAL	3	"MTRNR2L5,PCDH15,ZWINT"
TCGA.AA.A00F.01A	10	55839037	59955799	22	-0.5371	SMALL-LOSS	FOCAL	4	"IPMK,MTRNR2L5,PCDH15,ZWINT"
TCGA.DM.A1D0	10	55906111	56883743	343	-0.7394	SMALL-LOSS	FOCAL	1	PCDH15
TCGA.AA.3982	10	55964450	59449641	1111	-0.9492	SMALL-LOSS	FOCAL	3	"MTRNR2L5,PCDH15,ZWINT"
TCGA.AG.3891.01A	10	56423916	58120888	7	-0.8069	SMALL-LOSS	FOCAL	3	"MTRNR2L5,PCDH15,ZWINT"
TCGA.AA.3850	10	57999716	58394333	86	-0.54045	SMALL-LOSS	FOCAL	1	ZWINT
TCGA.AA.3982	10	59459557	60324281	293	-0.5683	SMALL-LOSS	FOCAL	5	"BICC1,CISD1,IPMK,TFAM,UBE2D1"
TCGA.AG.3909.01A	10	59986754	60154641	17	-0.8651	SMALL-LOSS	FOCAL	4	"CISD1,IPMK,TFAM,UBE2D1"
TCGA.AG.A01L.01A	10	60145257	60154088	6	-0.6942	SMALL-LOSS	FOCAL	1	TFAM
TCGA.A6.2686	10	61448671	61765084	143	-0.9931	SMALL-LOSS	FOCAL	3	"CCDC6,MRLN,SLC16A9"
TCGA.CK.5914.01A	10	62444256	62551686	6	-0.8138	SMALL-LOSS	FOCAL	2	"ANK3,CDK1"
TCGA.AG.3909.01A	10	62539841	62553618	6	-1.0416	SMALL-LOSS	FOCAL	1	CDK1
TCGA.AA.3850	10	62838862	63528521	214	-0.75615	SMALL-LOSS	FOCAL	2	"C10orf107,TMEM26"
TCGA.AA.3941	10	62839168	63525023	212	-0.5937	SMALL-LOSS	FOCAL	2	"C10orf107,TMEM26"
TCGA.AG.4009.01A	10	63982947	64148107	9	-0.5602	SMALL-LOSS	FOCAL	2	"RTKN2,ZNF365"
TCGA.AG.4009.01A	10	64564773	64575574	3	-1.165	SMALL-LOSS	FOCAL	2	"ADO,EGR2"
TCGA.AA.3941	10	64657914	64677915	23	-0.5343	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	10	64973183	68535144	12	-0.5374	SMALL-LOSS	FOCAL	3	"CTNNA3,JMJD1C,REEP3"
TCGA.DM.A0XD	10	65161549	65958646	254	-0.6162	SMALL-LOSS	FOCAL	2	"JMJD1C,REEP3"
TCGA.5M.AAT4	10	65203807	65323180	18	-0.7242	SMALL-LOSS	FOCAL	2	"JMJD1C,REEP3"
TCGA.AA.3941	10	65245501	65247352	4	-0.8601	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5538	10	65285484	65497836	57	-0.6438	SMALL-LOSS	FOCAL	1	REEP3
TCGA.DM.A1DB	10	65301324	65406160	22	-0.7193	SMALL-LOSS	FOCAL	1	REEP3
TCGA.AA.A00N.01A	10	65369899	65380524	3	-0.9262	SMALL-LOSS	FOCAL	1	REEP3
TCGA.DM.A1DB	10	65487431	65871418	172	-0.6215	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6626	10	65684471	65712394	15	-1.0702	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	10	65769865	65772315	7	-0.9263	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	10	65833743	67451569	501	-0.77755	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3598	10	68643272	68648237	3	-1.046	SMALL-LOSS	FOCAL	1	CTNNA3
TCGA.AG.4009.01A	10	69647127	69666520	5	-0.6077	SMALL-LOSS	FOCAL	1	SIRT1
TCGA.AA.A00N.01A	10	69647127	69667742	6	-1.1423	SMALL-LOSS	FOCAL	1	SIRT1
TCGA.AA.A010.01A	10	69954070	69966480	6	-0.9611	SMALL-LOSS	FOCAL	1	MYPN
TCGA.AG.4009.01A	10	69990928	70055976	7	-0.5583	SMALL-LOSS	FOCAL	2	"ATOH7,PBLD"
TCGA.CK.5914.01A	10	69990928	70178753	36	-0.5448	SMALL-LOSS	FOCAL	5	"ATOH7,DNA2,HNRNPH3,PBLD,RUFY2"
TCGA.AA.A00N.01A	10	70043887	70105478	16	-0.9831	SMALL-LOSS	FOCAL	3	"HNRNPH3,PBLD,RUFY2"
TCGA.AA.3509.01A	10	70098891	70515983	71	-0.5673	SMALL-LOSS	FOCAL	6	"CCAR1,DNA2,HNRNPH3,RUFY2,SLC25A16,TET1"
TCGA.AZ.4684.01A	10	70101338	70550895	78	-0.7131	SMALL-LOSS	FOCAL	6	"CCAR1,DNA2,HNRNPH3,RUFY2,SLC25A16,TET1"
TCGA.AA.A00N.01A	10	70152836	70332078	35	-0.7713	SMALL-LOSS	FOCAL	4	"DNA2,RUFY2,SLC25A16,TET1"
TCGA.AG.4009.01A	10	70154038	70164419	4	-0.6183	SMALL-LOSS	FOCAL	1	RUFY2
TCGA.AA.A00N.01A	10	70482202	70500322	4	-1.07	SMALL-LOSS	FOCAL	1	CCAR1
TCGA.AA.A00N.01A	10	70550895	70715928	21	-0.7336	SMALL-LOSS	FOCAL	4	"CCAR1,DDX21,DDX50,STOX1"
TCGA.AG.3909.01A	10	70666428	70673766	6	-0.8236	SMALL-LOSS	FOCAL	1	DDX50
TCGA.AG.3909.01A	10	70728681	70760168	11	-1.077	SMALL-LOSS	FOCAL	2	"DDX21,KIAA1279"
TCGA.AA.A010.01A	10	70951364	70980122	11	-0.6977	SMALL-LOSS	FOCAL	2	"HKDC1,SUPV3L1"
TCGA.F4.6461	10	71003611	71006130	3	-0.8182	SMALL-LOSS	FOCAL	1	HKDC1
TCGA.AG.3909.01A	10	71146036	71175686	10	-0.5641	SMALL-LOSS	FOCAL	2	"HK1,TACR2"
TCGA.AA.3530	10	71345938	71363180	9	-0.8517	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	10	71345938	71363180	9	-0.7913	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3861.01A	10	71583792	71718356	38	-1.0964	SMALL-LOSS	FOCAL	1	COL13A1
TCGA.AA.3862.01A	10	71583792	71718356	38	-0.9766	SMALL-LOSS	FOCAL	1	COL13A1
TCGA.AG.3909.01A	10	71899668	71921338	10	-1.181	SMALL-LOSS	FOCAL	2	"SAR1A,TYSND1"
TCGA.CK.5914.01A	10	71903558	71921338	8	-0.8601	SMALL-LOSS	FOCAL	2	"SAR1A,TYSND1"
TCGA.AA.A00N.01A	10	71962825	72207597	26	-0.5853	SMALL-LOSS	FOCAL	5	"EIF4EBP2,LRRC20,NODAL,NPFFR1,PPA1"
TCGA.AG.3909.01A	10	72179628	72195021	4	-1.0619	SMALL-LOSS	FOCAL	2	"EIF4EBP2,NODAL"
TCGA.AG.4009.01A	10	72434280	72468303	3	-0.5597	SMALL-LOSS	FOCAL	1	ADAMTS14
TCGA.AG.4009.01A	10	72576534	72645517	17	-0.6932	SMALL-LOSS	FOCAL	2	"PCBD1,SGPL1"
TCGA.CK.5914.01A	10	72576534	72645517	18	-0.9815	SMALL-LOSS	FOCAL	2	"PCBD1,SGPL1"
TCGA.AA.3967.01A	10	73103919	73574708	70	-0.5155	SMALL-LOSS	FOCAL	4	"C10orf105,C10orf54,CDH23,SLC29A3"
TCGA.AA.A00Q.01A	10	73822516	73830019	7	-0.9044	SMALL-LOSS	FOCAL	1	SPOCK2
TCGA.AG.4009.01A	10	74095521	74100520	4	-0.6128	SMALL-LOSS	FOCAL	1	DNAJB12
TCGA.AG.4009.01A	10	74907987	74923454	6	-0.5773	SMALL-LOSS	FOCAL	1	ECD
TCGA.AG.3909.01A	10	74916031	75006395	7	-1.0234	SMALL-LOSS	FOCAL	3	"DNAJC9,ECD,FAM149B1"
TCGA.AA.A00N.01A	10	74994910	75010579	12	-0.8973	SMALL-LOSS	FOCAL	3	"DNAJC9,FAM149B1,MRPS16"
TCGA.CK.5914.01A	10	74999010	75016070	15	-0.8705	SMALL-LOSS	FOCAL	4	"CFAP70,DNAJC9,FAM149B1,MRPS16"
TCGA.CK.5914.01A	10	75082674	75135841	10	-0.633	SMALL-LOSS	FOCAL	2	"ANXA7,CFAP70"
TCGA.AA.A00N.01A	10	75143298	75187772	14	-0.5686	SMALL-LOSS	FOCAL	2	"ANXA7,MSS51"
TCGA.AA.A00N.01A	10	75227294	75265019	11	-0.5347	SMALL-LOSS	FOCAL	2	"PPP3CB,USP54"
TCGA.AG.4009.01A	10	75258349	75276126	5	-0.6472	SMALL-LOSS	FOCAL	1	USP54
TCGA.AA.A00N.01A	10	75435769	75676100	85	-1.0379	SMALL-LOSS	FOCAL	9	"AGAP5,C10orf55,CAMK2G,CHCHD1,FUT11,NDST2,PLAU,SEC24C,ZSWIM8"
TCGA.AG.A01L.01A	10	75506550	75530410	19	-0.6554	SMALL-LOSS	FOCAL	1	SEC24C
TCGA.AG.A015.01A	10	75506550	75532045	20	-0.825	SMALL-LOSS	FOCAL	1	SEC24C
TCGA.AA.A010.01A	10	75519338	75608789	66	-0.719	SMALL-LOSS	FOCAL	6	"CAMK2G,CHCHD1,FUT11,NDST2,SEC24C,ZSWIM8"
TCGA.CK.5914.01A	10	75523200	75674960	75	-0.7911	SMALL-LOSS	FOCAL	8	"C10orf55,CAMK2G,CHCHD1,FUT11,NDST2,PLAU,SEC24C,ZSWIM8"
TCGA.AG.3909.01A	10	75525188	75676100	72	-1.0224	SMALL-LOSS	FOCAL	8	"C10orf55,CAMK2G,CHCHD1,FUT11,NDST2,PLAU,SEC24C,ZSWIM8"
TCGA.AG.4009.01A	10	75541797	75608225	42	-1.1047	SMALL-LOSS	FOCAL	4	"CAMK2G,CHCHD1,NDST2,ZSWIM8"
TCGA.AF.3914.01A	10	75560012	75606936	25	-0.6	SMALL-LOSS	FOCAL	3	"CAMK2G,NDST2,ZSWIM8"
TCGA.AA.A01Q.01A	10	75562161	75632717	29	-0.6546	SMALL-LOSS	FOCAL	2	"CAMK2G,NDST2"
TCGA.AA.A00F.01A	10	75830410	75873890	18	-0.5164	SMALL-LOSS	FOCAL	1	VCL
TCGA.AA.A017.01A	10	75860654	75864762	3	-1.2101	SMALL-LOSS	FOCAL	1	VCL
TCGA.AA.A00N.01A	10	75883531	75897887	8	-1.013	SMALL-LOSS	FOCAL	1	AP3M1
TCGA.AG.3909.01A	10	75888818	75897887	5	-1.2039	SMALL-LOSS	FOCAL	1	AP3M1
TCGA.CK.5914.01A	10	75888818	75984222	9	-0.6118	SMALL-LOSS	FOCAL	2	"ADK,AP3M1"
TCGA.F5.6464	10	77144926	77163287	3	-0.8849	SMALL-LOSS	FOCAL	1	ZNF503
TCGA.DM.A1D0	10	77242060	77312099	18	-0.8032	SMALL-LOSS	FOCAL	1	C10orf11
TCGA.T9.A92H	10	77288044	78073978	299	-0.7746	SMALL-LOSS	FOCAL	1	C10orf11
TCGA.G4.6626	10	77414884	77564559	46	-0.9978	SMALL-LOSS	FOCAL	1	C10orf11
TCGA.D5.5538	10	77642919	78118689	215	-0.615	SMALL-LOSS	FOCAL	1	C10orf11
TCGA.A6.6782	10	77654451	78141332	207	-0.6056	SMALL-LOSS	FOCAL	1	C10orf11
TCGA.AG.A026	10	78008748	78073978	31	-0.6536	SMALL-LOSS	FOCAL	1	C10orf11
TCGA.AA.A01T	10	78441431	79450864	484	-0.7067	SMALL-LOSS	FOCAL	1	KCNMA1
TCGA.5M.AATE	10	79384252	79462179	26	-1.2132	SMALL-LOSS	FOCAL	1	KCNMA1
TCGA.AA.3982	10	79424630	79425212	4	-0.5926	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6317	10	80684974	80685077	3	-0.5974	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	10	81036890	81058121	8	-1.2207	SMALL-LOSS	FOCAL	1	ZMIZ1
TCGA.AA.A010.01A	10	81108759	81275001	13	-0.9076	SMALL-LOSS	FOCAL	3	"EIF5AL1,PPIF,ZCCHC24"
TCGA.AM.5820	10	81127648	81130035	3	-0.5886	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3939.01A	10	81316973	81373481	8	-0.8424	SMALL-LOSS	FOCAL	2	"SFTPA1,SFTPA2"
TCGA.AG.3891.01A	10	81316973	81608492	9	-0.5463	SMALL-LOSS	FOCAL	3	"NUTM2B,SFTPA1,SFTPA2"
TCGA.AA.A00D.01A	10	81371287	81702487	10	-0.6574	SMALL-LOSS	FOCAL	3	"NUTM2B,SFTPA1,SFTPD"
TCGA.AA.A00N.01A	10	81742247	81901796	9	-1.0131	SMALL-LOSS	FOCAL	2	"PLAC9,TMEM254"
TCGA.AG.3909.01A	10	81841432	81925823	13	-0.9792	SMALL-LOSS	FOCAL	3	"ANXA11,PLAC9,TMEM254"
TCGA.AA.A00N.01A	10	82045208	82191691	16	-1.2447	SMALL-LOSS	FOCAL	4	"DYDC1,DYDC2,FAM213A,MAT1A"
TCGA.AG.3909.01A	10	82098181	82191691	13	-1.1798	SMALL-LOSS	FOCAL	3	"DYDC1,DYDC2,FAM213A"
TCGA.CK.5914.01A	10	82111617	82191691	10	-1.0715	SMALL-LOSS	FOCAL	3	"DYDC1,DYDC2,FAM213A"
TCGA.EI.6508	10	82881974	82888268	4	-1.0657	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6509	10	82881974	82888268	4	-1.2453	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01T	10	83336272	86000026	1092	-0.7133	SMALL-LOSS	FOCAL	6	"C10orf99,CDHR1,GHITM,LRIT1,LRIT2,NRG3"
TCGA.AA.3556	10	84855797	85045161	52	-0.7158	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	10	85901205	85993842	31	-1.0069	SMALL-LOSS	FOCAL	5	"C10orf99,CDHR1,GHITM,LRIT1,LRIT2"
TCGA.CK.5914.01A	10	85901205	85993842	33	-0.5348	SMALL-LOSS	FOCAL	5	"C10orf99,CDHR1,GHITM,LRIT1,LRIT2"
TCGA.AA.A00N.01A	10	85901205	86001036	35	-0.663	SMALL-LOSS	FOCAL	5	"C10orf99,CDHR1,GHITM,LRIT1,LRIT2"
TCGA.AG.A01L.01A	10	85964226	85973811	9	-0.664	SMALL-LOSS	FOCAL	1	CDHR1
TCGA.AA.3850	10	86430734	86454471	10	-0.55105	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	10	86480664	86525964	9	-0.5767	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	10	87222094	87247924	8	-1.0153	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	10	87290628	87330726	19	-0.9766	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6932	10	87496786	87723253	84	-0.8481	SMALL-LOSS	FOCAL	1	GRID1
TCGA.AG.3909.01A	10	88123650	88226996	12	-0.9507	SMALL-LOSS	FOCAL	2	"GRID1,WAPAL"
TCGA.AG.4009.01A	10	88123650	88226996	12	-0.8521	SMALL-LOSS	FOCAL	2	"GRID1,WAPAL"
TCGA.AF.3914.01A	10	88123650	88230701	13	-0.8418	SMALL-LOSS	FOCAL	2	"GRID1,WAPAL"
TCGA.AA.A010.01A	10	88123650	88233605	17	-0.9975	SMALL-LOSS	FOCAL	2	"GRID1,WAPAL"
TCGA.AA.A00N.01A	10	88123650	88277349	21	-0.9782	SMALL-LOSS	FOCAL	2	"GRID1,WAPAL"
TCGA.A6.3808.01A	10	88126014	88452211	41	-0.6134	SMALL-LOSS	FOCAL	4	"GRID1,LDB3,OPN4,WAPAL"
TCGA.AA.A00N.01A	10	88671950	88704918	8	-0.7813	SMALL-LOSS	FOCAL	2	"BMPR1A,MMRN2"
TCGA.AA.A010.01A	10	88717093	88722636	6	-0.815	SMALL-LOSS	FOCAL	2	"MMRN2,SNCG"
TCGA.AA.A010.01A	10	88818857	88854035	9	-1.2746	SMALL-LOSS	FOCAL	1	GLUD1
TCGA.AG.3909.01A	10	88950191	89280766	9	-0.8149	SMALL-LOSS	FOCAL	3	"FAM35A,MINPP1,NUTM2A"
TCGA.A6.6649	10	89428993	90474023	327	-0.7076	SMALL-LOSS	FOCAL	7	"ATAD1,KLLN,LIPF,LIPJ,PAPSS2,PTEN,RNLS"
TCGA.AA.A00N.01A	10	89574173	89624170	4	-1.1079	SMALL-LOSS	FOCAL	3	"ATAD1,KLLN,PTEN"
TCGA.AA.3941	10	90122511	90349909	56	-0.6892	SMALL-LOSS	FOCAL	2	"LIPJ,RNLS"
TCGA.AA.3811	10	90183101	90211163	11	-1.1942	SMALL-LOSS	FOCAL	1	RNLS
TCGA.AA.3977	10	90183407	90193429	6	-0.9968	SMALL-LOSS	FOCAL	1	RNLS
TCGA.AA.3977	10	90221650	90226019	4	-0.916	SMALL-LOSS	FOCAL	1	RNLS
TCGA.AG.3611.01A	10	90332633	90350348	5	-0.6302	SMALL-LOSS	FOCAL	2	"LIPJ,RNLS"
TCGA.AA.3982	10	90354887	90357158	4	-1.1456	SMALL-LOSS	FOCAL	1	LIPJ
TCGA.AA.A00N.01A	10	90732902	91007257	19	-0.8413	SMALL-LOSS	FOCAL	4	"ACTA2,CH25H,FAS,LIPA"
TCGA.CK.5914.01A	10	90750557	90974553	10	-0.7613	SMALL-LOSS	FOCAL	4	"ACTA2,CH25H,FAS,LIPA"
TCGA.AG.3909.01A	10	90966251	91007257	10	-0.8446	SMALL-LOSS	FOCAL	2	"CH25H,LIPA"
TCGA.AA.A00N.01A	10	91162021	91192771	6	-1.0492	SMALL-LOSS	FOCAL	3	"IFIT1,IFIT5,SLC16A12"
TCGA.AA.3982	10	91977936	92038647	21	-0.9652	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	10	92001718	92167504	54	-0.5315	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	92502172	93220963	36	-0.986	SMALL-LOSS	FOCAL	5	"ANKRD1,HECTD2,HTR7,PCGF5,RPP30"
TCGA.CK.4952.01A	10	92972557	93607112	51	-0.6545	SMALL-LOSS	FOCAL	4	"HECTD2,PCGF5,PPP1R3C,TNKS2"
TCGA.AA.3967.01A	10	92982577	93609209	46	-0.5638	SMALL-LOSS	FOCAL	4	"HECTD2,PCGF5,PPP1R3C,TNKS2"
TCGA.CK.5914.01A	10	93240772	93389682	15	-0.584	SMALL-LOSS	FOCAL	2	"HECTD2,PPP1R3C"
TCGA.AA.3864	10	93439284	93447862	5	-1.0202	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	10	94210858	94257262	14	-0.6637	SMALL-LOSS	FOCAL	1	IDE
TCGA.AA.A00N.01A	10	94300982	94608240	29	-0.5632	SMALL-LOSS	FOCAL	4	"EXOC6,HHEX,IDE,KIF11"
TCGA.AG.A01W.01A	10	94362722	94403361	15	-0.5751	SMALL-LOSS	FOCAL	1	KIF11
TCGA.AA.A010.01A	10	94399514	94675474	17	-0.9024	SMALL-LOSS	FOCAL	3	"EXOC6,HHEX,KIF11"
TCGA.AA.3982	10	94692084	94700308	3	-1.2154	SMALL-LOSS	FOCAL	1	EXOC6
TCGA.AA.A010.01A	10	94707980	94836673	21	-0.8379	SMALL-LOSS	FOCAL	3	"CYP26A1,CYP26C1,EXOC6"
TCGA.AA.A00N.01A	10	94711998	94836673	20	-0.8322	SMALL-LOSS	FOCAL	3	"CYP26A1,CYP26C1,EXOC6"
TCGA.AG.4009.01A	10	94715290	94836673	13	-0.7791	SMALL-LOSS	FOCAL	3	"CYP26A1,CYP26C1,EXOC6"
TCGA.CK.4948.01B	10	94834028	95066641	6	-0.5195	SMALL-LOSS	FOCAL	2	"CYP26A1,MYOF"
TCGA.AA.A01Q.01A	10	94835546	94836673	3	-0.7321	SMALL-LOSS	FOCAL	1	CYP26A1
TCGA.AA.A00N.01A	10	95211761	95385273	24	-0.548	SMALL-LOSS	FOCAL	5	"CEP55,FFAR4,MYOF,PDE6C,RBP4"
TCGA.AG.3909.01A	10	95335807	95361350	8	-0.9428	SMALL-LOSS	FOCAL	2	"FFAR4,RBP4"
TCGA.AG.3909.01A	10	95443734	95459779	8	-0.5801	SMALL-LOSS	FOCAL	1	FRA10AC1
TCGA.AA.A00N.01A	10	95443734	95791386	19	-0.7383	SMALL-LOSS	FOCAL	4	"FRA10AC1,LGI1,PLCE1,SLC35G1"
TCGA.AA.3850	10	95484009	95490572	9	-0.81235	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	10	95658291	95718537	3	-0.9076	SMALL-LOSS	FOCAL	1	SLC35G1
TCGA.AA.3941	10	95782924	95784633	4	-1.3153	SMALL-LOSS	FOCAL	1	PLCE1
TCGA.CK.5914.01A	10	96099448	96356604	46	-0.5218	SMALL-LOSS	FOCAL	3	"HELLS,NOC3L,TBC1D12"
TCGA.AA.A00N.01A	10	96108990	96122495	10	-1.1473	SMALL-LOSS	FOCAL	1	NOC3L
TCGA.AG.3909.01A	10	96108990	96122495	10	-0.9572	SMALL-LOSS	FOCAL	1	NOC3L
TCGA.AG.A01W.01A	10	96243077	96326370	19	-0.6593	SMALL-LOSS	FOCAL	2	"HELLS,TBC1D12"
TCGA.AA.3850	10	96441299	96936656	90	-0.57975	SMALL-LOSS	FOCAL	4	"CYP2C18,CYP2C19,CYP2C8,CYP2C9"
TCGA.AY.4071	10	97026457	97367723	181	-0.9788	SMALL-LOSS	FOCAL	3	"ALDH18A1,PDLIM1,SORBS1"
TCGA.AG.A01W.01A	10	97091280	97131404	10	-0.7421	SMALL-LOSS	FOCAL	1	SORBS1
TCGA.D5.6536	10	97214417	97585013	144	-0.6371	SMALL-LOSS	FOCAL	4	"ALDH18A1,ENTPD1,SORBS1,TCTN3"
TCGA.CK.5914.01A	10	97402717	97453059	14	-0.8154	SMALL-LOSS	FOCAL	2	"ALDH18A1,TCTN3"
TCGA.AG.A01W.01A	10	97434200	97443050	7	-0.74	SMALL-LOSS	FOCAL	1	TCTN3
TCGA.AA.3982	10	97523779	97542451	6	-0.5297	SMALL-LOSS	FOCAL	1	ENTPD1
TCGA.AA.3864	10	97529270	97539139	4	-1.1048	SMALL-LOSS	FOCAL	1	ENTPD1
TCGA.AA.A00N.01A	10	97784538	97817536	9	-0.8346	SMALL-LOSS	FOCAL	2	"CC2D2B,CCNJ"
TCGA.AA.3982	10	97868204	97875513	5	-1.0406	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	10	98126392	98136651	5	-1.0508	SMALL-LOSS	FOCAL	1	TLL2
TCGA.AA.A00N.01A	10	98281956	98361989	15	-0.6867	SMALL-LOSS	FOCAL	2	"PIK3AP1,TM9SF3"
TCGA.AA.A010.01A	10	98286910	98369442	16	-1.0175	SMALL-LOSS	FOCAL	2	"PIK3AP1,TM9SF3"
TCGA.AG.A01W.01A	10	98309345	98459293	19	-0.6004	SMALL-LOSS	FOCAL	2	"PIK3AP1,TM9SF3"
TCGA.AG.4009.01A	10	98319354	98361989	6	-0.5229	SMALL-LOSS	FOCAL	2	"PIK3AP1,TM9SF3"
TCGA.AG.4009.01A	10	98588372	98714683	4	-0.9707	SMALL-LOSS	FOCAL	1	LCOR
TCGA.AA.A00N.01A	10	98588372	98741810	7	-0.9257	SMALL-LOSS	FOCAL	2	"C10orf12,LCOR"
TCGA.AA.A010.01A	10	98588372	98741810	7	-1.0708	SMALL-LOSS	FOCAL	2	"C10orf12,LCOR"
TCGA.AG.A01W.01A	10	98784157	99150804	63	-0.7987	SMALL-LOSS	FOCAL	5	"ARHGAP19,FRAT1,FRAT2,RRP12,SLIT1"
TCGA.AG.A015.01A	10	98985788	99130170	22	-0.7108	SMALL-LOSS	FOCAL	4	"ARHGAP19,FRAT1,FRAT2,RRP12"
TCGA.A6.3808.01A	10	99129130	99376913	90	-0.9639	SMALL-LOSS	FOCAL	10	"ANKRD2,C10orf62,EXOSC1,HOGA1,MMS19,MORN4,PGAM1,RRP12,UBTD1,ZDHHC16"
TCGA.AA.A010.01A	10	99190087	99200871	9	-0.7053	SMALL-LOSS	FOCAL	2	"EXOSC1,PGAM1"
TCGA.AA.A01Q.01A	10	99190087	99202971	10	-0.8305	SMALL-LOSS	FOCAL	2	"EXOSC1,PGAM1"
TCGA.AG.3909.01A	10	99190087	99202971	10	-1.1929	SMALL-LOSS	FOCAL	2	"EXOSC1,PGAM1"
TCGA.CK.5914.01A	10	99190087	99216484	19	-0.9434	SMALL-LOSS	FOCAL	3	"EXOSC1,PGAM1,ZDHHC16"
TCGA.AG.3909.01A	10	99205442	99215307	8	-0.733	SMALL-LOSS	FOCAL	2	"EXOSC1,ZDHHC16"
TCGA.AA.A010.01A	10	99227968	99243798	12	-0.8102	SMALL-LOSS	FOCAL	1	MMS19
TCGA.AA.A010.01A	10	99410651	99623639	27	-0.9205	SMALL-LOSS	FOCAL	6	"AVPI1,GOLGA7B,MARVELD1,PI4K2A,SFRP5,ZFYVE27"
TCGA.AA.A010.01A	10	99770863	100022460	22	-1.2781	SMALL-LOSS	FOCAL	3	"CRTAC1,LOXL4,R3HCC1L"
TCGA.A6.6653	10	100023856	100047974	10	-0.6987	SMALL-LOSS	FOCAL	1	LOXL4
TCGA.AH.6644	10	100025923	100047500	5	-1.0385	SMALL-LOSS	FOCAL	1	LOXL4
TCGA.AG.A01W.01A	10	100134647	100157632	12	-0.8862	SMALL-LOSS	FOCAL	1	PYROXD2
TCGA.AA.3811	10	100436691	100810338	106	-0.6659	SMALL-LOSS	FOCAL	1	HPSE2
TCGA.AG.3909.01A	10	101180361	101421182	9	-0.5838	SMALL-LOSS	FOCAL	4	"ENTPD7,GOT1,NKX2-3,SLC25A28"
TCGA.AA.3850	10	101211256	101216174	4	-0.95705	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	10	101292857	101373426	5	-0.631	SMALL-LOSS	FOCAL	2	"NKX2-3,SLC25A28"
TCGA.AG.A01W.01A	10	101463096	101557080	31	-0.5356	SMALL-LOSS	FOCAL	4	"ABCC2,COX15,CUTC,ENTPD7"
TCGA.AG.3909.01A	10	101480697	101542521	14	-0.5976	SMALL-LOSS	FOCAL	3	"ABCC2,COX15,CUTC"
TCGA.AA.A010.01A	10	101551950	101565081	9	-0.7239	SMALL-LOSS	FOCAL	1	ABCC2
TCGA.AA.A00N.01A	10	101577018	101667700	26	-1.135	SMALL-LOSS	FOCAL	2	"ABCC2,DNMBP"
TCGA.CK.5914.01A	10	101578516	101603508	8	-1.1319	SMALL-LOSS	FOCAL	1	ABCC2
TCGA.AF.3914.01A	10	101590017	101595817	5	-1.1458	SMALL-LOSS	FOCAL	1	ABCC2
TCGA.AG.4009.01A	10	101590017	101659629	23	-0.8458	SMALL-LOSS	FOCAL	2	"ABCC2,DNMBP"
TCGA.CK.5914.01A	10	101604032	101668671	18	-0.5215	SMALL-LOSS	FOCAL	2	"ABCC2,DNMBP"
TCGA.AG.3909.01A	10	101643741	101659629	9	-0.9537	SMALL-LOSS	FOCAL	1	DNMBP
TCGA.AG.A01W.01A	10	101647785	101923905	23	-0.6058	SMALL-LOSS	FOCAL	3	"CPN1,DNMBP,ERLIN1"
TCGA.CK.5914.01A	10	101911860	102048104	51	-0.6602	SMALL-LOSS	FOCAL	5	"BLOC1S2,CHUK,CWF19L1,ERLIN1,PKD2L1"
TCGA.AG.3909.01A	10	101927033	101985630	26	-1.0975	SMALL-LOSS	FOCAL	2	"CHUK,ERLIN1"
TCGA.AA.3982	10	101953704	101962223	4	-0.734	SMALL-LOSS	FOCAL	1	CHUK
TCGA.AG.A01W.01A	10	101987799	102017241	11	-0.9178	SMALL-LOSS	FOCAL	2	"CHUK,CWF19L1"
TCGA.AG.3909.01A	10	101989145	102052673	26	-0.5957	SMALL-LOSS	FOCAL	4	"BLOC1S2,CHUK,CWF19L1,PKD2L1"
TCGA.AA.A010.01A	10	102013141	102059310	25	-0.7074	SMALL-LOSS	FOCAL	3	"BLOC1S2,CWF19L1,PKD2L1"
TCGA.A6.6653	10	102023005	102057567	12	-0.559	SMALL-LOSS	FOCAL	3	"BLOC1S2,CWF19L1,PKD2L1"
TCGA.AG.4009.01A	10	102027241	102040673	4	-1.0786	SMALL-LOSS	FOCAL	2	"BLOC1S2,CWF19L1"
TCGA.AA.A02H.01A	10	102035183	102054253	12	-1.27	SMALL-LOSS	FOCAL	2	"BLOC1S2,PKD2L1"
TCGA.AG.A01W.01A	10	102035780	102078917	17	-0.9845	SMALL-LOSS	FOCAL	2	"BLOC1S2,PKD2L1"
TCGA.AG.A01L.01A	10	102045807	102057091	13	-0.5364	SMALL-LOSS	FOCAL	2	"BLOC1S2,PKD2L1"
TCGA.AA.A00N.01A	10	102045807	102510402	72	-0.6904	SMALL-LOSS	FOCAL	8	"BLOC1S2,HIF1AN,NDUFB8,PAX2,PKD2L1,SCD,SEC31B,WNT8B"
TCGA.A6.6653	10	102063559	102070268	4	-1.2701	SMALL-LOSS	FOCAL	1	PKD2L1
TCGA.A6.6653	10	102073364	102093681	11	-0.7253	SMALL-LOSS	FOCAL	1	PKD2L1
TCGA.AG.3909.01A	10	102107773	102267162	31	-0.6209	SMALL-LOSS	FOCAL	3	"SCD,SEC31B,WNT8B"
TCGA.AA.3982	10	102222660	102229350	8	-0.7148	SMALL-LOSS	FOCAL	1	WNT8B
TCGA.AG.A01L.01A	10	102238788	102250466	13	-0.5483	SMALL-LOSS	FOCAL	2	"SEC31B,WNT8B"
TCGA.AG.3909.01A	10	102267618	102306219	17	-1.2491	SMALL-LOSS	FOCAL	3	"HIF1AN,NDUFB8,SEC31B"
TCGA.AG.3909.01A	10	102306850	102780319	61	-0.527	SMALL-LOSS	FOCAL	8	"C10orf2,FAM178A,HIF1AN,LZTS2,MRPL43,PAX2,PDZD7,SEMA4G"
TCGA.AF.3914.01A	10	102584365	102587278	4	-1.134	SMALL-LOSS	FOCAL	1	PAX2
TCGA.AG.4009.01A	10	102584365	102587278	4	-0.7354	SMALL-LOSS	FOCAL	1	PAX2
TCGA.AA.A00N.01A	10	102584365	102827545	73	-0.7956	SMALL-LOSS	FOCAL	9	"C10orf2,FAM178A,KAZALD1,LZTS2,MRPL43,PAX2,PDZD7,SEMA4G,SFXN3"
TCGA.CK.5914.01A	10	102716195	102987020	57	-0.6064	SMALL-LOSS	FOCAL	10	"C10orf2,FAM178A,KAZALD1,LBX1,LZTS2,MRPL43,PDZD7,SEMA4G,SFXN3,TLX1"
TCGA.AA.A01Q.01A	10	102733244	102988211	51	-0.6654	SMALL-LOSS	FOCAL	9	"C10orf2,KAZALD1,LBX1,LZTS2,MRPL43,PDZD7,SEMA4G,SFXN3,TLX1"
TCGA.AA.A010.01A	10	102765195	102783644	12	-1.3007	SMALL-LOSS	FOCAL	2	"LZTS2,PDZD7"
TCGA.AA.A00Q.01A	10	102777809	102783644	7	-0.8164	SMALL-LOSS	FOCAL	1	PDZD7
TCGA.AA.A010.01A	10	102789723	102799205	12	-0.6194	SMALL-LOSS	FOCAL	2	"PDZD7,SFXN3"
TCGA.AA.A010.01A	10	103432621	103563450	22	-1.2841	SMALL-LOSS	FOCAL	4	"FBXW4,FGF8,MGEA5,NPM3"
TCGA.AA.A00L.01A	10	103436062	103541445	5	-0.6634	SMALL-LOSS	FOCAL	3	"FBXW4,FGF8,NPM3"
TCGA.AA.A00N.01A	10	103531170	103542980	8	-0.639	SMALL-LOSS	FOCAL	2	"FGF8,NPM3"
TCGA.AG.A01W.01A	10	103531436	103541045	8	-0.9913	SMALL-LOSS	FOCAL	1	FGF8
TCGA.AG.A01W.01A	10	103542538	103557426	8	-0.6428	SMALL-LOSS	FOCAL	2	"MGEA5,NPM3"
TCGA.CK.5914.01A	10	103546171	103588341	21	-0.7985	SMALL-LOSS	FOCAL	2	"KCNIP2,MGEA5"
TCGA.AG.3909.01A	10	103563450	103577569	7	-0.9589	SMALL-LOSS	FOCAL	1	MGEA5
TCGA.AG.4009.01A	10	103771459	103870574	15	-0.6259	SMALL-LOSS	FOCAL	3	"C10orf76,HPS6,LDB1"
TCGA.AA.A00N.01A	10	103772515	103903938	21	-0.9085	SMALL-LOSS	FOCAL	4	"C10orf76,HPS6,LDB1,PPRC1"
TCGA.AG.3909.01A	10	103789231	103825185	4	-1.1302	SMALL-LOSS	FOCAL	2	"C10orf76,HPS6"
TCGA.AG.A01W.01A	10	103893929	103902111	7	-1.0163	SMALL-LOSS	FOCAL	1	PPRC1
TCGA.AG.4009.01A	10	103986257	103988552	4	-1.1063	SMALL-LOSS	FOCAL	1	ELOVL3
TCGA.CK.5914.01A	10	103986257	103988552	4	-1.3134	SMALL-LOSS	FOCAL	1	ELOVL3
TCGA.AA.A00N.01A	10	103986257	104019754	9	-1.0467	SMALL-LOSS	FOCAL	3	"ELOVL3,GBF1,PITX3"
TCGA.AG.A01W.01A	10	104008634	104125118	27	-0.7012	SMALL-LOSS	FOCAL	1	GBF1
TCGA.AA.A010.01A	10	104123413	104141801	19	-0.5333	SMALL-LOSS	FOCAL	1	GBF1
TCGA.AA.A00N.01A	10	104155627	104268874	51	-0.6955	SMALL-LOSS	FOCAL	8	"ACTR1A,C10orf95,CUEDC2,FBXL15,NFKB2,PSD,SUFU,TMEM180"
TCGA.AA.A02K.01A	10	104155628	104171413	17	-0.571	SMALL-LOSS	FOCAL	2	"NFKB2,PSD"
TCGA.AG.4009.01A	10	104155972	104174669	20	-0.961	SMALL-LOSS	FOCAL	2	"NFKB2,PSD"
TCGA.AA.A01Q.01A	10	104162915	104174669	10	-0.78	SMALL-LOSS	FOCAL	1	PSD
TCGA.AG.A01W.01A	10	104174798	104479008	48	-0.5229	SMALL-LOSS	FOCAL	10	"ACTR1A,ARL3,C10orf95,CUEDC2,FBXL15,PSD,SFXN2,SUFU,TMEM180,TRIM8"
TCGA.AA.A01Q.01A	10	104240573	104268874	11	-0.6199	SMALL-LOSS	FOCAL	2	"ACTR1A,SUFU"
TCGA.AA.A010.01A	10	104378729	104416482	8	-0.9745	SMALL-LOSS	FOCAL	2	"SUFU,TRIM8"
TCGA.DM.A28A	10	104456724	104897900	96	-0.7663	SMALL-LOSS	FOCAL	8	"ARL3,AS3MT,C10orf32,CNNM2,CYP17A1,NT5C2,SFXN2,WBP1L"
TCGA.AG.A01W.01A	10	104479417	104580410	14	-0.9374	SMALL-LOSS	FOCAL	2	"SFXN2,WBP1L"
TCGA.AG.A015.01A	10	104491414	104613992	18	-0.6087	SMALL-LOSS	FOCAL	4	"C10orf32,CYP17A1,SFXN2,WBP1L"
TCGA.AG.A01L.01A	10	104590407	104596772	7	-0.7806	SMALL-LOSS	FOCAL	1	CYP17A1
TCGA.CK.5914.01A	10	104620034	104836701	22	-0.6959	SMALL-LOSS	FOCAL	3	"AS3MT,C10orf32,CNNM2"
TCGA.AG.3909.01A	10	104620034	104852847	27	-0.9035	SMALL-LOSS	FOCAL	4	"AS3MT,C10orf32,CNNM2,NT5C2"
TCGA.AA.A00N.01A	10	104620034	105151905	63	-1.003	SMALL-LOSS	FOCAL	9	"AS3MT,C10orf32,CNNM2,INA,NT5C2,PCGF6,RPEL1,TAF5,USMG5"
TCGA.AG.A01W.01A	10	105036742	105194218	54	-0.6716	SMALL-LOSS	FOCAL	5	"INA,PCGF6,PDCD11,TAF5,USMG5"
TCGA.AA.A01Q.01A	10	105197700	105495462	33	-0.6498	SMALL-LOSS	FOCAL	6	"CALHM1,CALHM2,CALHM3,NEURL1,PDCD11,SH3PXD2A"
TCGA.AG.3909.01A	10	105205093	105371276	13	-1.049	SMALL-LOSS	FOCAL	6	"CALHM1,CALHM2,CALHM3,NEURL1,PDCD11,SH3PXD2A"
TCGA.AG.4009.01A	10	105330577	105372558	9	-1.0679	SMALL-LOSS	FOCAL	2	"NEURL1,SH3PXD2A"
TCGA.AA.A00N.01A	10	105363471	105376907	5	-1.2335	SMALL-LOSS	FOCAL	1	SH3PXD2A
TCGA.AG.3909.01A	10	105800782	105819838	23	-0.6167	SMALL-LOSS	FOCAL	1	COL17A1
TCGA.AG.3909.01A	10	105882716	105903157	10	-0.8697	SMALL-LOSS	FOCAL	2	"CFAP43,SFR1"
TCGA.AG.3909.01A	10	106014880	106118102	13	-1.0824	SMALL-LOSS	FOCAL	4	"CFAP58,GSTO1,GSTO2,ITPRIP"
TCGA.CK.5914.01A	10	106019284	106058837	10	-1.0391	SMALL-LOSS	FOCAL	2	"GSTO1,GSTO2"
TCGA.AA.3850	10	106709323	111482112	1782	-0.53845	SMALL-LOSS	FOCAL	2	"SORCS1,SORCS3"
TCGA.AA.3941	10	106767802	108239469	542	-0.605	SMALL-LOSS	FOCAL	1	SORCS3
TCGA.AA.3864	10	107785919	107833002	13	-1.1597	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	10	108789004	108790757	4	-1.0601	SMALL-LOSS	FOCAL	1	SORCS1
TCGA.AA.3941	10	108811602	108836578	17	-0.8868	SMALL-LOSS	FOCAL	1	SORCS1
TCGA.AA.3941	10	109117318	110702425	635	-0.5741	SMALL-LOSS	FOCAL	0	None
TCGA.RU.A8FL	10	110446631	111112626	186	-0.6629	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	10	111651433	111706944	6	-1.2983	SMALL-LOSS	FOCAL	1	XPNPEP1
TCGA.AG.4009.01A	10	111987930	112266651	12	-0.7573	SMALL-LOSS	FOCAL	3	"DUSP5,MXI1,SMNDC1"
TCGA.AG.3909.01A	10	111987930	112343151	23	-0.7538	SMALL-LOSS	FOCAL	4	"DUSP5,MXI1,SMC3,SMNDC1"
TCGA.AA.3941	10	112000965	112003799	4	-1.2457	SMALL-LOSS	FOCAL	1	MXI1
TCGA.AA.3844	10	112000965	112011483	8	-0.9783	SMALL-LOSS	FOCAL	1	MXI1
TCGA.AA.3982	10	112000965	112013273	9	-0.8344	SMALL-LOSS	FOCAL	1	MXI1
TCGA.AD.6965	10	112010829	112016925	5	-0.573	SMALL-LOSS	FOCAL	1	MXI1
TCGA.AA.A010.01A	10	112038891	112257898	9	-0.6352	SMALL-LOSS	FOCAL	3	"DUSP5,MXI1,SMNDC1"
TCGA.AA.A00N.01A	10	112053866	112343562	21	-1.2076	SMALL-LOSS	FOCAL	3	"DUSP5,SMC3,SMNDC1"
TCGA.CK.5914.01A	10	112053866	112360165	31	-0.57	SMALL-LOSS	FOCAL	3	"DUSP5,SMC3,SMNDC1"
TCGA.CA.5254	10	112157993	112165648	4	-1.1197	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	10	112350118	112640974	32	-0.7142	SMALL-LOSS	FOCAL	3	"PDCD4,RBM20,SMC3"
TCGA.D5.7000	10	112379588	113616254	559	-0.5674	SMALL-LOSS	FOCAL	5	"ADRA2A,BBIP1,PDCD4,RBM20,SHOC2"
TCGA.AG.3611.01A	10	112635720	112657759	11	-0.5849	SMALL-LOSS	FOCAL	1	PDCD4
TCGA.AG.3909.01A	10	112635720	112657759	12	-0.9221	SMALL-LOSS	FOCAL	1	PDCD4
TCGA.AA.A010.01A	10	112635720	112724100	13	-0.9172	SMALL-LOSS	FOCAL	3	"BBIP1,PDCD4,SHOC2"
TCGA.AA.3941	10	112670140	112691146	4	-1.0094	SMALL-LOSS	FOCAL	2	"BBIP1,SHOC2"
TCGA.AA.A00N.01A	10	113928573	113941403	8	-1.2238	SMALL-LOSS	FOCAL	1	GPAM
TCGA.AG.3909.01A	10	113928573	113941403	8	-0.8788	SMALL-LOSS	FOCAL	1	GPAM
TCGA.CK.6748	10	114069897	114882670	245	-1.1143	SMALL-LOSS	FOCAL	4	"ACSL5,TCF7L2,VTI1A,ZDHHC6"
TCGA.CK.5914.01A	10	114182062	114204876	14	-0.6716	SMALL-LOSS	FOCAL	2	"ACSL5,ZDHHC6"
TCGA.EI.6514	10	114211423	115242505	337	-0.5782	SMALL-LOSS	FOCAL	2	"TCF7L2,VTI1A"
TCGA.3L.AA1B	10	114222453	115839615	631	-0.6981	SMALL-LOSS	FOCAL	9	"ADRB1,CASP7,DCLRE1A,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,VTI1A"
TCGA.AD.6965	10	114270473	114880550	174	-0.6645	SMALL-LOSS	FOCAL	2	"TCF7L2,VTI1A"
TCGA.AG.3890	10	114318064	114732905	136	-0.6303	SMALL-LOSS	FOCAL	2	"TCF7L2,VTI1A"
TCGA.AA.3989	10	114422398	114912982	148	-1.1022	SMALL-LOSS	FOCAL	2	"TCF7L2,VTI1A"
TCGA.AG.A01W.01A	10	114714244	115530256	86	-0.5228	SMALL-LOSS	FOCAL	5	"CASP7,HABP2,NRAP,PLEKHS1,TCF7L2"
TCGA.AA.A024.01A	10	114799752	115384534	47	-0.6848	SMALL-LOSS	FOCAL	3	"HABP2,NRAP,TCF7L2"
TCGA.AG.3909.01A	10	114910710	114925286	8	-0.7896	SMALL-LOSS	FOCAL	1	TCF7L2
TCGA.AA.3844	10	115137989	115146713	8	-0.82	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3556	10	115200122	115201108	3	-0.8527	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	10	115594884	115639283	14	-0.9844	SMALL-LOSS	FOCAL	2	"DCLRE1A,NHLRC2"
TCGA.AG.3909.01A	10	115601118	115618240	9	-1.0951	SMALL-LOSS	FOCAL	2	"DCLRE1A,NHLRC2"
TCGA.CK.5914.01A	10	115603825	115618240	8	-0.8092	SMALL-LOSS	FOCAL	2	"DCLRE1A,NHLRC2"
TCGA.AG.A01W.01A	10	115874858	115885849	9	-0.6152	SMALL-LOSS	FOCAL	1	CCDC186
TCGA.AA.3977	10	115893433	115894958	3	-0.8467	SMALL-LOSS	FOCAL	1	CCDC186
TCGA.D5.5538	10	115924320	116480622	238	-0.6662	SMALL-LOSS	FOCAL	5	"ABLIM1,AFAP1L2,CCDC186,TDRD1,VWA2"
TCGA.AG.A01W.01A	10	115976785	116022473	8	-0.7635	SMALL-LOSS	FOCAL	2	"TDRD1,VWA2"
TCGA.AA.A00N.01A	10	115981077	116013360	8	-1.0525	SMALL-LOSS	FOCAL	2	"TDRD1,VWA2"
TCGA.A6.3808.01A	10	115982299	116008407	6	-1.0683	SMALL-LOSS	FOCAL	2	"TDRD1,VWA2"
TCGA.AG.3909.01A	10	116048649	116070056	11	-1.1785	SMALL-LOSS	FOCAL	2	"AFAP1L2,VWA2"
TCGA.AA.A00N.01A	10	116055714	116082875	13	-0.7652	SMALL-LOSS	FOCAL	1	AFAP1L2
TCGA.AA.3811	10	116709964	117705521	252	-0.5814	SMALL-LOSS	FOCAL	2	"ATRNL1,TRUB1"
TCGA.AA.3844	10	116806774	117579013	185	-0.6862	SMALL-LOSS	FOCAL	1	ATRNL1
TCGA.AA.3941	10	116806774	117579013	185	-0.6452	SMALL-LOSS	FOCAL	1	ATRNL1
TCGA.AA.3850	10	116874476	117585156	172	-0.87855	SMALL-LOSS	FOCAL	1	ATRNL1
TCGA.QG.A5YW	10	116874476	117815731	266	-0.9857	SMALL-LOSS	FOCAL	1	ATRNL1
TCGA.CI.6621	10	116935114	117092592	20	-0.6886	SMALL-LOSS	FOCAL	1	ATRNL1
TCGA.AA.3867	10	117310947	117338980	10	-1.1468	SMALL-LOSS	FOCAL	1	ATRNL1
TCGA.AA.3850	10	118171383	118190441	12	-1.13005	SMALL-LOSS	FOCAL	1	PNLIPRP3
TCGA.AA.A00N.01A	10	118357291	118424243	21	-1.1473	SMALL-LOSS	FOCAL	3	"C10orf82,PNLIPRP1,PNLIPRP2"
TCGA.CK.5914.01A	10	118357291	118441245	27	-0.5226	SMALL-LOSS	FOCAL	4	"C10orf82,HSPA12A,PNLIPRP1,PNLIPRP2"
TCGA.AG.3909.01A	10	118359510	118441245	26	-0.7734	SMALL-LOSS	FOCAL	4	"C10orf82,HSPA12A,PNLIPRP1,PNLIPRP2"
TCGA.A6.6653	10	118456149	118540457	34	-0.5268	SMALL-LOSS	FOCAL	1	HSPA12A
TCGA.AA.3850	10	119793616	119881442	17	-0.70425	SMALL-LOSS	FOCAL	1	RAB11FIP2
TCGA.AA.3850	10	120074099	120202416	55	-0.62845	SMALL-LOSS	FOCAL	1	FAM204A
TCGA.AG.A01W.01A	10	120787736	120857452	21	-0.6658	SMALL-LOSS	FOCAL	2	"EIF3A,NANOS1"
TCGA.AA.A00N.01A	10	120796581	120919155	36	-0.9485	SMALL-LOSS	FOCAL	3	"EIF3A,FAM45A,SFXN4"
TCGA.AG.A01W.01A	10	120861315	120904538	11	-1.0117	SMALL-LOSS	FOCAL	2	"FAM45A,SFXN4"
TCGA.AA.A01Q.01A	10	120905700	121286769	38	-0.634	SMALL-LOSS	FOCAL	4	"GRK5,PRDX3,RGS10,SFXN4"
TCGA.AF.3914.01A	10	120914522	120928642	10	-1.3076	SMALL-LOSS	FOCAL	2	"PRDX3,SFXN4"
TCGA.AG.4009.01A	10	120917113	120936485	11	-1.0822	SMALL-LOSS	FOCAL	2	"PRDX3,SFXN4"
TCGA.CK.5914.01A	10	120938184	121189821	9	-0.6523	SMALL-LOSS	FOCAL	2	"GRK5,PRDX3"
TCGA.QL.A97D	10	121063198	121065939	6	-0.808	SMALL-LOSS	FOCAL	1	GRK5
TCGA.AA.A010.01A	10	121286769	121341661	10	-0.5963	SMALL-LOSS	FOCAL	2	"RGS10,TIAL1"
TCGA.CK.5914.01A	10	121510542	121590935	21	-1.1622	SMALL-LOSS	FOCAL	2	"INPP5F,MCMBP"
TCGA.AA.A010.01A	10	121541116	121571222	12	-1.1813	SMALL-LOSS	FOCAL	1	INPP5F
TCGA.AG.4009.01A	10	121541116	121571222	12	-1.2374	SMALL-LOSS	FOCAL	1	INPP5F
TCGA.AA.A010.01A	10	121586692	121619262	15	-1.2598	SMALL-LOSS	FOCAL	2	"INPP5F,MCMBP"
TCGA.AA.A00N.01A	10	121590935	121619262	14	-0.6935	SMALL-LOSS	FOCAL	1	MCMBP
TCGA.AG.3906.01A	10	122358749	122633297	11	-0.5276	SMALL-LOSS	FOCAL	1	WDR11
TCGA.CK.5914.01A	10	122611987	122637818	11	-0.8462	SMALL-LOSS	FOCAL	1	WDR11
TCGA.AA.3875	10	122886720	122887136	4	-1.1385	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3979	10	122886720	122887136	4	-1.1919	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3989	10	122886720	122887136	4	-0.8951	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	10	122921562	122923498	6	-1.3077	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	10	123629440	123733471	18	-0.6358	SMALL-LOSS	FOCAL	2	"ATE1,NSMCE4A"
TCGA.AG.3909.01A	10	123670383	123730407	11	-0.8682	SMALL-LOSS	FOCAL	2	"ATE1,NSMCE4A"
TCGA.AG.4009.01A	10	123670383	123730407	11	-0.5686	SMALL-LOSS	FOCAL	2	"ATE1,NSMCE4A"
TCGA.AG.3909.01A	10	123903037	123984224	7	-0.5152	SMALL-LOSS	FOCAL	1	TACC2
TCGA.AG.4009.01A	10	123954503	123976121	5	-0.5256	SMALL-LOSS	FOCAL	1	TACC2
TCGA.AA.3982	10	124080663	124081913	3	-1.1426	SMALL-LOSS	FOCAL	1	BTBD16
TCGA.AA.A010.01A	10	124152666	124248910	16	-0.9864	SMALL-LOSS	FOCAL	3	"ARMS2,HTRA1,PLEKHA1"
TCGA.CK.5914.01A	10	124214202	124273666	10	-0.6576	SMALL-LOSS	FOCAL	2	"ARMS2,HTRA1"
TCGA.DM.A28M.01A	10	124341274	124360472	16	-0.9865	SMALL-LOSS	FOCAL	1	DMBT1
TCGA.AG.3909.01A	10	124708118	124757968	13	-1.2483	SMALL-LOSS	FOCAL	3	"C10orf88,IKZF5,PSTK"
TCGA.AG.4009.01A	10	124742291	124757968	9	-1.0197	SMALL-LOSS	FOCAL	2	"IKZF5,PSTK"
TCGA.CK.5914.01A	10	124742291	124757968	10	-1.1827	SMALL-LOSS	FOCAL	2	"IKZF5,PSTK"
TCGA.AG.4009.01A	10	124907853	125447403	13	-0.732	SMALL-LOSS	FOCAL	3	"BUB3,GPR26,HMX2"
TCGA.AG.3909.01A	10	124914397	124924497	8	-1.1512	SMALL-LOSS	FOCAL	1	BUB3
TCGA.AA.3982	10	125303382	125307695	3	-1.0435	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	10	125564899	125585304	9	-1.1482	SMALL-LOSS	FOCAL	1	CPXM2
TCGA.AA.A010.01A	10	125622079	125771797	5	-1.1149	SMALL-LOSS	FOCAL	2	"CHST15,CPXM2"
TCGA.AG.3909.01A	10	125639679	126311771	23	-0.8582	SMALL-LOSS	FOCAL	6	"CHST15,CPXM2,FAM53B,LHPP,NKX1-2,OAT"
TCGA.AA.A00N.01A	10	125639679	126519871	45	-0.8558	SMALL-LOSS	FOCAL	8	"CHST15,CPXM2,FAM175B,FAM53B,LHPP,METTL10,NKX1-2,OAT"
TCGA.AA.A010.01A	10	126086492	126138282	10	-0.8539	SMALL-LOSS	FOCAL	2	"NKX1-2,OAT"
TCGA.AA.3524	10	126266755	126722649	120	-0.8995	SMALL-LOSS	FOCAL	6	"CTBP2,FAM175B,FAM53B,LHPP,METTL10,ZRANB1"
TCGA.AA.3986	10	126581890	126581983	3	-1.3218	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3930.01A	10	126681731	126694074	7	-0.7465	SMALL-LOSS	FOCAL	1	CTBP2
TCGA.D5.6536	10	126755396	128459849	734	-0.7033	SMALL-LOSS	FOCAL	10	"ADAM12,BCCIP,C10orf90,CTBP2,DHX32,EDRF1,FANK1,MMP21,TEX36,UROS"
TCGA.AA.A00N.01A	10	127409725	127418808	7	-0.8536	SMALL-LOSS	FOCAL	1	EDRF1
TCGA.CK.5914.01A	10	127409725	127424222	10	-0.6003	SMALL-LOSS	FOCAL	1	EDRF1
TCGA.AA.A010.01A	10	127428985	127434274	4	-0.8028	SMALL-LOSS	FOCAL	1	EDRF1
TCGA.AA.A00N.01A	10	127437952	127451848	4	-0.7294	SMALL-LOSS	FOCAL	1	EDRF1
TCGA.AG.4009.01A	10	127441331	127483402	12	-0.7113	SMALL-LOSS	FOCAL	3	"EDRF1,MMP21,UROS"
TCGA.CK.5914.01A	10	127451848	127685920	43	-0.602	SMALL-LOSS	FOCAL	6	"BCCIP,DHX32,EDRF1,FANK1,MMP21,UROS"
TCGA.AA.A010.01A	10	127461141	127504699	12	-0.7081	SMALL-LOSS	FOCAL	2	"MMP21,UROS"
TCGA.AG.3909.01A	10	127483402	127495939	5	-0.6477	SMALL-LOSS	FOCAL	1	UROS
TCGA.AG.3909.01A	10	127500738	127522291	9	-1.239	SMALL-LOSS	FOCAL	2	"BCCIP,UROS"
TCGA.AG.3909.01A	10	127668722	127685920	5	-1.1837	SMALL-LOSS	FOCAL	1	FANK1
TCGA.AA.3556	10	127786508	128340975	323	-0.7793	SMALL-LOSS	FOCAL	2	"ADAM12,C10orf90"
TCGA.AA.3524	10	127938549	128143337	105	-0.7593	SMALL-LOSS	FOCAL	2	"ADAM12,C10orf90"
TCGA.AG.3909.01A	10	128788682	128810501	7	-1.2056	SMALL-LOSS	FOCAL	1	DOCK1
TCGA.CK.5914.01A	10	128788682	128824564	11	-1.0077	SMALL-LOSS	FOCAL	1	DOCK1
TCGA.AA.3975	10	128843906	128869832	29	-0.8942	SMALL-LOSS	FOCAL	1	DOCK1
TCGA.F4.6461	10	128908901	129990346	495	-0.5735	SMALL-LOSS	FOCAL	7	"CLRN3,DOCK1,FAM196A,FOXI2,MKI67,NPS,PTPRE"
TCGA.D5.6535	10	128952264	129181804	93	-1.1223	SMALL-LOSS	FOCAL	2	"DOCK1,FAM196A"
TCGA.EF.5830	10	129343951	132329551	1413	-0.744	SMALL-LOSS	FOCAL	8	"CLRN3,EBF3,FOXI2,GLRX3,MGMT,MKI67,NPS,PTPRE"
TCGA.AA.A01Q.01A	10	129854332	129864292	5	-1.0341	SMALL-LOSS	FOCAL	1	PTPRE
TCGA.AA.3524	10	130450188	131307204	432	-0.8262	SMALL-LOSS	FOCAL	1	MGMT
TCGA.CK.6747	10	130829780	132042098	536	-0.9398	SMALL-LOSS	FOCAL	3	"EBF3,GLRX3,MGMT"
TCGA.AA.A010.01A	10	131934640	131977590	10	-0.668	SMALL-LOSS	FOCAL	1	GLRX3
TCGA.EI.6513	10	132328528	132535787	91	-0.9871	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3524	10	132387675	133808340	690	-0.887	SMALL-LOSS	FOCAL	3	"BNIP3,PPP2R2D,TCERG1L"
TCGA.D5.7000	10	133141040	134046707	343	-0.689	SMALL-LOSS	FOCAL	5	"BNIP3,DPYSL4,JAKMIP3,PPP2R2D,STK32C"
TCGA.AA.3982	10	133380640	133435387	3	-1.0512	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3930.01A	10	133949387	134021463	24	-0.5502	SMALL-LOSS	FOCAL	3	"DPYSL4,JAKMIP3,STK32C"
TCGA.CK.5914.01A	10	134137687	134579214	34	-1.2856	SMALL-LOSS	FOCAL	4	"C10orf91,INPP5A,LRRC27,PWWP2B"
TCGA.AG.3906.01A	10	134230475	134742928	29	-0.5174	SMALL-LOSS	FOCAL	5	"C10orf91,CFAP46,INPP5A,NKX6-2,PWWP2B"
TCGA.CK.5914.01A	10	134591123	134740781	52	-0.7325	SMALL-LOSS	FOCAL	3	"CFAP46,INPP5A,NKX6-2"
TCGA.AA.3930.01A	10	134591123	135087213	97	-0.5239	SMALL-LOSS	FOCAL	8	"ADAM8,ADGRA1,CFAP46,INPP5A,KNDC1,NKX6-2,UTF1,VENTX"
TCGA.AF.3914.01A	10	134752054	135106536	47	-0.7118	SMALL-LOSS	FOCAL	7	"ADAM8,ADGRA1,CFAP46,KNDC1,TUBGCP2,UTF1,VENTX"
TCGA.AA.A010.01A	10	134910430	135076512	36	-1.2773	SMALL-LOSS	FOCAL	5	"ADAM8,ADGRA1,KNDC1,UTF1,VENTX"
TCGA.AA.A010.01A	10	135077134	135171371	54	-0.7506	SMALL-LOSS	FOCAL	6	"ADAM8,CALY,FUOM,PRAP1,TUBGCP2,ZNF511"
TCGA.AA.A02K.01A	10	135084186	135088938	6	-1.0082	SMALL-LOSS	FOCAL	1	ADAM8
TCGA.CK.5914.01A	10	135097345	135211880	48	-0.9267	SMALL-LOSS	FOCAL	8	"CALY,ECHS1,FUOM,MTG1,PAOX,PRAP1,TUBGCP2,ZNF511"
TCGA.AA.A01Q.01A	10	135176306	135233481	23	-0.5715	SMALL-LOSS	FOCAL	3	"ECHS1,MTG1,PAOX"
TCGA.AG.3611.01A	10	135345041	135373539	16	-0.6084	SMALL-LOSS	FOCAL	2	"CYP2E1,SYCE1"
TCGA.AA.A010.01A	10	135352242	135440021	14	-1.2251	SMALL-LOSS	FOCAL	3	"CYP2E1,FRG2B,SYCE1"
TCGA.AA.3844	10	135360142	135366101	6	-0.7776	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	10	135361096	135365334	4	-0.7041	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6140	10	135365144	135434550	33	-0.6294	SMALL-LOSS	FOCAL	1	SYCE1
TCGA.AA.A00N.01A	11	180187	237001	27	-0.7859	SMALL-LOSS	FOCAL	7	"BET1L,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.A6.3808.01A	11	180187	293324	51	-0.8971	SMALL-LOSS	FOCAL	9	"ATHL1,BET1L,NLRP6,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AG.4009.01A	11	193048	284181	38	-0.7017	SMALL-LOSS	FOCAL	8	"BET1L,NLRP6,ODF3,PSMD13,RIC8A,SCGB1C1,SCGB1C2,SIRT3"
TCGA.AG.A01W.01A	11	233972	242455	8	-0.7597	SMALL-LOSS	FOCAL	2	"PSMD13,SIRT3"
TCGA.AA.A00N.01A	11	251803	299276	19	-0.5228	SMALL-LOSS	FOCAL	4	"ATHL1,IFITM5,NLRP6,PSMD13"
TCGA.AA.A02K.01A	11	292845	308153	6	-0.5824	SMALL-LOSS	FOCAL	3	"ATHL1,IFITM2,IFITM5"
TCGA.AA.A00N.01A	11	308152	320516	6	-1.1688	SMALL-LOSS	FOCAL	3	"IFITM1,IFITM2,IFITM3"
TCGA.AG.3891.01A	11	396854	407765	3	-1.0563	SMALL-LOSS	FOCAL	2	"PKP3,SIGIRR"
TCGA.AA.A010.01A	11	420416	502015	25	-0.7247	SMALL-LOSS	FOCAL	3	"ANO9,PTDSS2,RNH1"
TCGA.AA.A01Q.01A	11	441826	533768	20	-1.2225	SMALL-LOSS	FOCAL	4	"ANO9,HRAS,PTDSS2,RNH1"
TCGA.AA.A010.01A	11	592507	679657	35	-1.2186	SMALL-LOSS	FOCAL	6	"CDHR5,DEAF1,DRD4,IRF7,PHRF1,SCT"
TCGA.AA.A02K.01A	11	612625	639397	15	-0.5276	SMALL-LOSS	FOCAL	4	"CDHR5,DRD4,IRF7,SCT"
TCGA.AA.A010.01A	11	702906	775007	27	-1.0379	SMALL-LOSS	FOCAL	4	"EPS8L2,PDDC1,TALDO1,TMEM80"
TCGA.AG.3909.01A	11	758898	764733	6	-1.208	SMALL-LOSS	FOCAL	1	TALDO1
TCGA.AA.A010.01A	11	819670	830566	10	-1.2439	SMALL-LOSS	FOCAL	2	"CRACR2B,PNPLA2"
TCGA.AA.A010.01A	11	862530	893377	9	-1.2863	SMALL-LOSS	FOCAL	2	"CHID1,TSPAN4"
TCGA.AG.3906.01A	11	986758	1280942	61	-0.6598	SMALL-LOSS	FOCAL	5	"AP2A2,MUC2,MUC5AC,MUC5B,MUC6"
TCGA.AG.A016.01A	11	992476	1283395	33	-0.5649	SMALL-LOSS	FOCAL	5	"AP2A2,MUC2,MUC5AC,MUC5B,MUC6"
TCGA.AA.A010.01A	11	1003663	1018185	13	-0.9642	SMALL-LOSS	FOCAL	2	"AP2A2,MUC6"
TCGA.AA.3967.01A	11	1009083	1275876	83	-0.7528	SMALL-LOSS	FOCAL	5	"AP2A2,MUC2,MUC5AC,MUC5B,MUC6"
TCGA.AG.3891.01A	11	1015712	1161751	49	-0.6396	SMALL-LOSS	FOCAL	3	"MUC2,MUC5AC,MUC6"
TCGA.AA.3930.01A	11	1016370	1579291	118	-0.623	SMALL-LOSS	FOCAL	8	"BRSK2,DUSP8,MOB2,MUC2,MUC5AC,MUC5B,MUC6,TOLLIP"
TCGA.AA.A010.01A	11	1087831	1095112	11	-1.1838	SMALL-LOSS	FOCAL	1	MUC2
TCGA.A6.3808.01A	11	1103508	1260979	40	-1.2454	SMALL-LOSS	FOCAL	3	"MUC2,MUC5AC,MUC5B"
TCGA.AA.A010.01A	11	1260630	1284221	24	-0.9161	SMALL-LOSS	FOCAL	1	MUC5B
TCGA.AA.A01F.01A	11	1580088	1651159	10	-0.5793	SMALL-LOSS	FOCAL	6	"DUSP8,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5"
TCGA.AG.A016.01A	11	1580088	1718688	13	-0.6538	SMALL-LOSS	FOCAL	7	"DUSP8,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6"
TCGA.AA.A02K.01A	11	1778573	1857090	7	-0.8731	SMALL-LOSS	FOCAL	2	"CTSD,SYT8"
TCGA.AA.A010.01A	11	1891657	1959607	26	-0.7469	SMALL-LOSS	FOCAL	2	"LSP1,TNNT3"
TCGA.AG.3906.01A	11	1901270	1959607	18	-0.6149	SMALL-LOSS	FOCAL	2	"LSP1,TNNT3"
TCGA.AA.A01Q.01A	11	1972082	1977459	4	-1.0455	SMALL-LOSS	FOCAL	1	MRPL23
TCGA.AA.A010.01A	11	2180966	2189043	10	-0.7029	SMALL-LOSS	FOCAL	3	"INS,INS-IGF2,TH"
TCGA.AA.A010.01A	11	2415278	2482884	28	-1.0392	SMALL-LOSS	FOCAL	4	"CD81,KCNQ1,TRPM5,TSSC4"
TCGA.AA.A01Q.01A	11	2549103	3062074	46	-0.6813	SMALL-LOSS	FOCAL	7	"CARS,CDKN1C,KCNQ1,NAP1L4,PHLDA2,SLC22A18,SLC22A18AS"
TCGA.EI.6508	11	2568982	2938959	115	-1.0077	SMALL-LOSS	FOCAL	4	"CDKN1C,KCNQ1,SLC22A18,SLC22A18AS"
TCGA.AG.3906.01A	11	2591830	2799160	10	-0.6051	SMALL-LOSS	FOCAL	1	KCNQ1
TCGA.AA.3844	11	2615599	2638080	10	-0.5882	SMALL-LOSS	FOCAL	1	KCNQ1
TCGA.AA.3850	11	2616052	2639711	10	-0.98255	SMALL-LOSS	FOCAL	1	KCNQ1
TCGA.AA.A010.01A	11	2868977	2992621	28	-1.0646	SMALL-LOSS	FOCAL	6	"CDKN1C,KCNQ1,NAP1L4,PHLDA2,SLC22A18,SLC22A18AS"
TCGA.A6.3810.01A	11	2868977	3039045	41	-0.5612	SMALL-LOSS	FOCAL	7	"CARS,CDKN1C,KCNQ1,NAP1L4,PHLDA2,SLC22A18,SLC22A18AS"
TCGA.NH.A6GB	11	2895799	3441873	141	-0.8818	SMALL-LOSS	FOCAL	10	"CARS,CDKN1C,MRGPRE,MRGPRG,NAP1L4,OSBPL5,PHLDA2,SLC22A18,SLC22A18AS,ZNF195"
TCGA.AZ.4684.01A	11	2976884	2993285	7	-0.8253	SMALL-LOSS	FOCAL	1	NAP1L4
TCGA.AA.A00N.01A	11	3239153	3704381	27	-0.8146	SMALL-LOSS	FOCAL	7	"ART1,ART5,CHRNA10,MRGPRE,MRGPRG,NUP98,ZNF195"
TCGA.A6.2672	11	3528150	4452471	250	-0.5192	SMALL-LOSS	FOCAL	10	"ART1,ART5,CHRNA10,NUP98,OR52B4,PGAP2,RHOG,RRM1,STIM1,TRIM21"
TCGA.AA.A00N.01A	11	3794811	3877459	14	-0.8079	SMALL-LOSS	FOCAL	4	"NUP98,PGAP2,RHOG,STIM1"
TCGA.AA.A00N.01A	11	4123168	4148235	13	-0.8748	SMALL-LOSS	FOCAL	1	RRM1
TCGA.AA.A010.01A	11	4139503	4154743	10	-1.0046	SMALL-LOSS	FOCAL	1	RRM1
TCGA.AG.4009.01A	11	4147867	4159373	7	-1.025	SMALL-LOSS	FOCAL	1	RRM1
TCGA.CK.5914.01A	11	4150246	4159373	5	-1.2254	SMALL-LOSS	FOCAL	1	RRM1
TCGA.AG.3909.01A	11	4153464	4159373	4	-0.8818	SMALL-LOSS	FOCAL	1	RRM1
TCGA.AG.A011.01A	11	4880848	4881489	2	-0.9047	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	11	4982915	5019356	19	-0.7169	SMALL-LOSS	FOCAL	1	MMP26
TCGA.AG.4009.01A	11	5141866	5173144	4	-1.0423	SMALL-LOSS	FOCAL	2	"OR52A1,OR52A5"
TCGA.AA.A00N.01A	11	5290655	5345418	5	-0.6717	SMALL-LOSS	FOCAL	3	"HBE1,OR51B2,OR51B4"
TCGA.AA.3850	11	5569527	5575381	10	-0.88385	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	11	5573192	5578583	9	-0.5979	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	11	5581031	5645416	17	-0.5587	SMALL-LOSS	FOCAL	4	"OR52B6,TRIM34,TRIM6,TRIM6-TRIM34"
TCGA.AG.A015.01A	11	5624819	5687159	17	-0.6878	SMALL-LOSS	FOCAL	4	"TRIM34,TRIM5,TRIM6,TRIM6-TRIM34"
TCGA.AA.3941	11	5748987	5866332	48	-0.7252	SMALL-LOSS	FOCAL	6	"OR52E6,OR52N1,OR52N2,OR52N4,OR52N5,OR56B1"
TCGA.AA.3989	11	5755604	5756209	3	-0.9976	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	5770387	5778470	11	-0.92245	SMALL-LOSS	FOCAL	1	OR52N4
TCGA.AA.3850	11	5867587	5922221	22	-0.65305	SMALL-LOSS	FOCAL	2	"OR52E4,OR52E8"
TCGA.AA.A00N.01A	11	5968560	6023252	4	-0.5276	SMALL-LOSS	FOCAL	3	"OR52L1,OR56A3,OR56A5"
TCGA.AG.A015.01A	11	6231032	6341311	24	-0.5576	SMALL-LOSS	FOCAL	5	"C11orf42,CCKBR,CNGA4,FAM160A2,PRKCDBP"
TCGA.AA.A00N.01A	11	6243622	6498911	48	-0.5562	SMALL-LOSS	FOCAL	9	"APBB1,ARFIP2,CCKBR,CNGA4,FAM160A2,HPX,PRKCDBP,SMPD1,TRIM3"
TCGA.AG.3909.01A	11	6260381	6424319	24	-0.8814	SMALL-LOSS	FOCAL	5	"APBB1,CCKBR,CNGA4,PRKCDBP,SMPD1"
TCGA.AG.A01W.01A	11	6378741	6429050	19	-0.5382	SMALL-LOSS	FOCAL	2	"APBB1,SMPD1"
TCGA.AA.A010.01A	11	6417054	6431840	7	-0.625	SMALL-LOSS	FOCAL	1	APBB1
TCGA.AG.A015.01A	11	6422528	6486748	22	-0.5454	SMALL-LOSS	FOCAL	3	"APBB1,HPX,TRIM3"
TCGA.AA.A010.01A	11	6470208	6503225	19	-0.5471	SMALL-LOSS	FOCAL	3	"ARFIP2,TIMM10B,TRIM3"
TCGA.AG.3909.01A	11	6477281	6503225	15	-0.901	SMALL-LOSS	FOCAL	3	"ARFIP2,TIMM10B,TRIM3"
TCGA.AG.4009.01A	11	6498296	6503225	10	-1.0747	SMALL-LOSS	FOCAL	2	"ARFIP2,TIMM10B"
TCGA.AA.A00N.01A	11	6499300	6502958	7	-1.2208	SMALL-LOSS	FOCAL	2	"ARFIP2,TIMM10B"
TCGA.AG.A015.01A	11	6549730	6578706	3	-0.9716	SMALL-LOSS	FOCAL	1	DNHD1
TCGA.AA.A00N.01A	11	6569051	6629239	29	-0.9926	SMALL-LOSS	FOCAL	3	"DNHD1,ILK,RRP8"
TCGA.CK.5914.01A	11	6578706	6629239	25	-0.8227	SMALL-LOSS	FOCAL	3	"DNHD1,ILK,RRP8"
TCGA.A6.3808.01A	11	6578706	6652847	51	-0.9517	SMALL-LOSS	FOCAL	6	"DCHS1,DNHD1,ILK,RRP8,TAF10,TPP1"
TCGA.AG.3909.01A	11	6586888	6655038	44	-1.0348	SMALL-LOSS	FOCAL	6	"DCHS1,DNHD1,ILK,RRP8,TAF10,TPP1"
TCGA.AG.4009.01A	11	6621364	6661851	35	-1.2854	SMALL-LOSS	FOCAL	5	"DCHS1,ILK,RRP8,TAF10,TPP1"
TCGA.AF.3914.01A	11	6621685	6655038	34	-1.0784	SMALL-LOSS	FOCAL	5	"DCHS1,ILK,RRP8,TAF10,TPP1"
TCGA.AF.A56K	11	6623917	6656993	18	-0.6268	SMALL-LOSS	FOCAL	5	"DCHS1,ILK,RRP8,TAF10,TPP1"
TCGA.AA.A01Q.01A	11	6629581	6655038	29	-1.0284	SMALL-LOSS	FOCAL	4	"DCHS1,ILK,TAF10,TPP1"
TCGA.AA.A00N.01A	11	6632904	6661040	25	-0.9847	SMALL-LOSS	FOCAL	3	"DCHS1,TAF10,TPP1"
TCGA.CK.5914.01A	11	6637505	6661040	20	-0.6895	SMALL-LOSS	FOCAL	2	"DCHS1,TPP1"
TCGA.AA.3982	11	6774501	6778204	6	-0.7336	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	11	6789209	6897830	8	-0.5347	SMALL-LOSS	FOCAL	5	"OR10A2,OR10A5,OR2AG1,OR2AG2,OR6A2"
TCGA.AA.3982	11	6809274	6820292	12	-0.5507	SMALL-LOSS	FOCAL	1	OR6A2
TCGA.AA.3850	11	6901512	7417134	191	-0.56665	SMALL-LOSS	FOCAL	7	"NLRP14,OR2D2,OR2D3,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.AA.3941	11	6901512	7417134	191	-1.0768	SMALL-LOSS	FOCAL	7	"NLRP14,OR2D2,OR2D3,RBMXL2,SYT9,ZNF214,ZNF215"
TCGA.AA.A00N.01A	11	7083527	7255952	6	-0.931	SMALL-LOSS	FOCAL	2	"NLRP14,RBMXL2"
TCGA.CK.5914.01A	11	7091510	7111683	4	-1.0659	SMALL-LOSS	FOCAL	2	"NLRP14,RBMXL2"
TCGA.AG.A008.01A	11	7586752	7660936	13	-0.5385	SMALL-LOSS	FOCAL	1	PPFIBP2
TCGA.CK.5914.01A	11	7669984	7693931	14	-0.6845	SMALL-LOSS	FOCAL	2	"CYB5R2,PPFIBP2"
TCGA.AA.A00N.01A	11	7669984	7717212	19	-0.5807	SMALL-LOSS	FOCAL	3	"CYB5R2,OVCH2,PPFIBP2"
TCGA.AG.3909.01A	11	7674204	7693931	9	-1.1167	SMALL-LOSS	FOCAL	2	"CYB5R2,PPFIBP2"
TCGA.AA.3982	11	7952608	7953436	6	-0.9447	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	11	8008908	8060374	9	-0.5792	SMALL-LOSS	FOCAL	2	"EIF3F,TUB"
TCGA.AA.A00N.01A	11	8013266	8017443	7	-1.302	SMALL-LOSS	FOCAL	1	EIF3F
TCGA.AA.A010.01A	11	8014424	8102979	8	-0.6259	SMALL-LOSS	FOCAL	2	"EIF3F,TUB"
TCGA.AG.3891.01A	11	8640883	8705509	6	-0.5494	SMALL-LOSS	FOCAL	2	"RPL27A,TRIM66"
TCGA.AG.3909.01A	11	8704282	8717924	8	-0.8618	SMALL-LOSS	FOCAL	2	"RPL27A,ST5"
TCGA.AA.A00N.01A	11	8704282	8719040	9	-1.0451	SMALL-LOSS	FOCAL	2	"RPL27A,ST5"
TCGA.CK.5914.01A	11	8705509	9009637	43	-0.5432	SMALL-LOSS	FOCAL	7	"AKIP1,ASCL3,C11orf16,NRIP3,RPL27A,ST5,TMEM9B"
TCGA.AA.A010.01A	11	8959126	9111204	33	-0.5462	SMALL-LOSS	FOCAL	4	"ASCL3,NRIP3,SCUBE2,TMEM9B"
TCGA.AA.A00N.01A	11	8969818	9043364	13	-1.3139	SMALL-LOSS	FOCAL	3	"NRIP3,SCUBE2,TMEM9B"
TCGA.AG.4009.01A	11	8983583	9009637	6	-1.0585	SMALL-LOSS	FOCAL	2	"NRIP3,TMEM9B"
TCGA.AG.4009.01A	11	9087386	9161181	7	-0.5597	SMALL-LOSS	FOCAL	2	"DENND5A,SCUBE2"
TCGA.AA.A010.01A	11	9229092	9316769	7	-1.1034	SMALL-LOSS	FOCAL	2	"DENND5A,TMEM41B"
TCGA.CK.5914.01A	11	9304943	9321094	6	-0.7206	SMALL-LOSS	FOCAL	1	TMEM41B
TCGA.AA.3509.01A	11	9304943	9519205	37	-0.5708	SMALL-LOSS	FOCAL	3	"IPO7,TMEM41B,ZNF143"
TCGA.AA.3529	11	9550672	10786141	431	-0.5285	SMALL-LOSS	FOCAL	10	"ADM,AMPD3,CTR9,LYVE1,MRVI1,MTRNR2L8,RNF141,SBF2,SWAP70,WEE1"
TCGA.AG.3909.01A	11	9597434	9603032	4	-1.2747	SMALL-LOSS	FOCAL	1	WEE1
TCGA.AG.4009.01A	11	9597434	9606756	5	-1.2017	SMALL-LOSS	FOCAL	1	WEE1
TCGA.CK.5914.01A	11	9597434	9609958	7	-1.1441	SMALL-LOSS	FOCAL	1	WEE1
TCGA.AG.3909.01A	11	9769357	9771362	3	-0.6583	SMALL-LOSS	FOCAL	1	SWAP70
TCGA.A6.4105	11	9871015	9871142	3	-1.2594	SMALL-LOSS	FOCAL	1	SBF2
TCGA.AY.A71X	11	10159882	10571350	156	-0.8917	SMALL-LOSS	FOCAL	5	"ADM,AMPD3,MTRNR2L8,RNF141,SBF2"
TCGA.AG.4009.01A	11	10327228	10500066	6	-0.5392	SMALL-LOSS	FOCAL	2	"ADM,AMPD3"
TCGA.AA.3982	11	10440667	10452118	3	-1.0343	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A02K.01A	11	10645277	10655469	7	-0.5372	SMALL-LOSS	FOCAL	1	MRVI1
TCGA.NH.A6GA	11	10661950	10662348	4	-1.0449	SMALL-LOSS	FOCAL	1	MRVI1
TCGA.AG.3909.01A	11	10819294	10874992	13	-1.0746	SMALL-LOSS	FOCAL	2	"EIF4G2,ZBED5"
TCGA.CK.5914.01A	11	10819294	10874992	14	-1.3139	SMALL-LOSS	FOCAL	2	"EIF4G2,ZBED5"
TCGA.AA.3850	11	11118485	11161247	24	-0.51695	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	11	11122179	11161247	20	-0.6895	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	11377825	11388124	7	-0.88765	SMALL-LOSS	FOCAL	1	GALNT18
TCGA.AA.A010.01A	11	11926924	11952173	6	-0.6591	SMALL-LOSS	FOCAL	1	USP47
TCGA.AA.A010.01A	11	11954509	11971394	9	-1.284	SMALL-LOSS	FOCAL	1	USP47
TCGA.AA.A00N.01A	11	11957831	11969969	6	-0.7164	SMALL-LOSS	FOCAL	1	USP47
TCGA.F4.6460	11	12186085	12191660	3	-1.2936	SMALL-LOSS	FOCAL	1	MICAL2
TCGA.AA.A010.01A	11	12315076	12399154	8	-0.5924	SMALL-LOSS	FOCAL	2	"MICALCL,PARVA"
TCGA.AA.3850	11	12328417	12337322	6	-0.71775	SMALL-LOSS	FOCAL	1	MICALCL
TCGA.AA.3850	11	12570445	12641390	26	-0.52665	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	11	12590595	12596265	6	-0.5693	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	13147294	13153638	3	-1.24015	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	11	13260530	13275443	9	-0.7451	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	11	13347715	13363764	8	-0.8096	SMALL-LOSS	FOCAL	1	ARNTL
TCGA.AA.A02K.01A	11	13375805	13399847	14	-0.6278	SMALL-LOSS	FOCAL	1	ARNTL
TCGA.CK.5914.01A	11	14501085	14540465	16	-0.7104	SMALL-LOSS	FOCAL	2	"COPB1,PSMA1"
TCGA.AA.A00N.01A	11	14889025	14992605	11	-0.9495	SMALL-LOSS	FOCAL	3	"CALCA,CYP2R1,PDE3B"
TCGA.AA.A03J	11	15057996	15710083	236	-0.7009	SMALL-LOSS	FOCAL	3	"CALCB,INSC,LOC102724957"
TCGA.AA.3850	11	15813932	15830937	17	-0.98925	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	11	15994333	16362540	15	-0.5236	SMALL-LOSS	FOCAL	1	SOX6
TCGA.AA.A00L.01A	11	15994333	16760261	16	-0.5461	SMALL-LOSS	FOCAL	2	"C11orf58,SOX6"
TCGA.AA.3844	11	16011728	16576633	116	-0.7911	SMALL-LOSS	FOCAL	1	SOX6
TCGA.AA.3811	11	16012241	16485300	96	-0.7065	SMALL-LOSS	FOCAL	1	SOX6
TCGA.AA.3977	11	16016568	16116552	24	-0.567	SMALL-LOSS	FOCAL	1	SOX6
TCGA.AA.A010.01A	11	16036466	16424106	13	-0.806	SMALL-LOSS	FOCAL	1	SOX6
TCGA.AA.3850	11	16296411	16670196	69	-0.57215	SMALL-LOSS	FOCAL	1	SOX6
TCGA.AA.A01Q.01A	11	16816417	16837672	6	-0.6708	SMALL-LOSS	FOCAL	1	PLEKHA7
TCGA.AA.A00N.01A	11	17351657	17416668	9	-0.5509	SMALL-LOSS	FOCAL	4	"ABCC8,KCNJ11,NCR3LG1,NUCB2"
TCGA.AG.4009.01A	11	17408426	17415781	4	-0.9383	SMALL-LOSS	FOCAL	2	"ABCC8,KCNJ11"
TCGA.AA.A010.01A	11	17428152	17436012	7	-1.1664	SMALL-LOSS	FOCAL	1	ABCC8
TCGA.AA.A01Q.01A	11	17491601	17554739	27	-0.7848	SMALL-LOSS	FOCAL	2	"ABCC8,USH1C"
TCGA.AA.A00N.01A	11	17741328	17809584	9	-0.6151	SMALL-LOSS	FOCAL	2	"KCNC1,MYOD1"
TCGA.CK.5914.01A	11	17742387	18057497	26	-0.6218	SMALL-LOSS	FOCAL	4	"KCNC1,MYOD1,SERGEF,TPH1"
TCGA.AG.3909.01A	11	18028091	18062142	12	-1.1057	SMALL-LOSS	FOCAL	2	"SERGEF,TPH1"
TCGA.AA.A00N.01A	11	18111685	18124733	4	-0.8111	SMALL-LOSS	FOCAL	1	SAAL1
TCGA.A6.3808.01A	11	18261406	18436694	50	-0.6585	SMALL-LOSS	FOCAL	7	"GTF2H1,HPS5,LDHA,LDHC,SAA1,SAA2,SAA2-SAA4"
TCGA.AA.A010.01A	11	18266895	18314385	15	-0.6203	SMALL-LOSS	FOCAL	4	"HPS5,SAA1,SAA2,SAA2-SAA4"
TCGA.AG.4009.01A	11	18288383	18306852	7	-0.8176	SMALL-LOSS	FOCAL	2	"HPS5,SAA1"
TCGA.CK.5914.01A	11	18288383	18309413	10	-0.5286	SMALL-LOSS	FOCAL	2	"HPS5,SAA1"
TCGA.AG.3909.01A	11	18291211	18309043	7	-0.7415	SMALL-LOSS	FOCAL	2	"HPS5,SAA1"
TCGA.AA.A00N.01A	11	18316529	18322331	6	-0.6716	SMALL-LOSS	FOCAL	1	HPS5
TCGA.CK.5914.01A	11	18418358	18436694	9	-1.1279	SMALL-LOSS	FOCAL	2	"LDHA,LDHC"
TCGA.AA.A00N.01A	11	18418358	18496966	18	-1.231	SMALL-LOSS	FOCAL	3	"LDHA,LDHAL6A,LDHC"
TCGA.AG.3909.01A	11	18451272	18487134	8	-0.5588	SMALL-LOSS	FOCAL	2	"LDHAL6A,LDHC"
TCGA.AG.A01W.01A	11	18688409	18694824	6	-0.6783	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	11	18715958	18722099	6	-0.8585	SMALL-LOSS	FOCAL	1	TMEM86A
TCGA.AA.A00L.01A	11	18722463	18723072	2	-0.9743	SMALL-LOSS	FOCAL	1	TMEM86A
TCGA.AA.A00N.01A	11	18722463	18741246	18	-0.6853	SMALL-LOSS	FOCAL	2	"IGSF22,TMEM86A"
TCGA.AG.3909.01A	11	18722463	18754742	21	-0.601	SMALL-LOSS	FOCAL	3	"IGSF22,PTPN5,TMEM86A"
TCGA.AA.3941	11	18866535	19051557	89	-0.8054	SMALL-LOSS	FOCAL	1	MRGPRX1
TCGA.AZ.6600	11	18936253	18972359	12	-0.6698	SMALL-LOSS	FOCAL	1	MRGPRX1
TCGA.D5.6898	11	18951136	18960114	4	-1.1919	SMALL-LOSS	FOCAL	1	MRGPRX1
TCGA.EI.6506	11	18951136	18960114	5	-1.2211	SMALL-LOSS	FOCAL	1	MRGPRX1
TCGA.AA.3858	11	18958666	18960114	3	-1.2256	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	11	19246155	19967910	23	-0.6687	SMALL-LOSS	FOCAL	2	"E2F8,NAV2"
TCGA.AH.6549.01A	11	19853989	19970287	11	-1.096	SMALL-LOSS	FOCAL	1	NAV2
TCGA.AM.5820	11	20140354	20143781	4	-1.1093	SMALL-LOSS	FOCAL	1	NAV2
TCGA.AG.3909.01A	11	20177711	20424421	16	-0.9065	SMALL-LOSS	FOCAL	3	"DBX1,HTATIP2,PRMT3"
TCGA.CK.5914.01A	11	20385751	20417317	10	-1.1169	SMALL-LOSS	FOCAL	2	"HTATIP2,PRMT3"
TCGA.AA.A010.01A	11	20636207	20668329	9	-0.8763	SMALL-LOSS	FOCAL	1	SLC6A5
TCGA.AD.6901	11	20844851	20850229	3	-0.9162	SMALL-LOSS	FOCAL	1	NELL1
TCGA.AG.A01Y	11	20905941	25187426	1662	-0.7534	SMALL-LOSS	FOCAL	8	"ANO5,CCDC179,FANCF,GAS2,LUZP2,NELL1,SLC17A6,SVIP"
TCGA.EF.5830	11	21635281	22469479	269	-0.6636	SMALL-LOSS	FOCAL	2	"ANO5,SLC17A6"
TCGA.AA.A00N.01A	11	22225272	22247463	5	-0.9946	SMALL-LOSS	FOCAL	1	ANO5
TCGA.EF.5830	11	22473141	25683993	1162	-0.6248	SMALL-LOSS	FOCAL	5	"CCDC179,FANCF,GAS2,LUZP2,SVIP"
TCGA.D5.6930	11	25550329	25564189	9	-0.7903	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5821	11	26864772	30062688	839	-0.6577	SMALL-LOSS	FOCAL	9	"BBOX1,BDNF,CCDC34,FIBIN,KCNA4,KIF18A,LGR4,LIN7C,METTL15"
TCGA.AA.A00N.01A	11	27362887	27384376	4	-0.7982	SMALL-LOSS	FOCAL	1	CCDC34
TCGA.AG.3909.01A	11	27371747	27395469	8	-0.8036	SMALL-LOSS	FOCAL	2	"CCDC34,LGR4"
TCGA.AA.3695	11	27380196	27502674	27	-0.8745	SMALL-LOSS	FOCAL	2	"CCDC34,LGR4"
TCGA.AA.A00N.01A	11	27400233	27405819	6	-0.7497	SMALL-LOSS	FOCAL	1	LGR4
TCGA.AG.3909.01A	11	27720859	27742863	3	-1.0665	SMALL-LOSS	FOCAL	1	BDNF
TCGA.SS.A7HO	11	28177541	28360359	19	-0.7982	SMALL-LOSS	FOCAL	1	METTL15
TCGA.A6.4105	11	28421627	28634750	45	-0.7168	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6626	11	29138254	29174736	12	-0.5917	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	11	29908413	31082535	367	-1.1987	SMALL-LOSS	FOCAL	5	"ARL14EP,DCDC5,FSHB,KCNA4,MPPED2"
TCGA.DM.A285	11	30017577	30027073	5	-1.269	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5820	11	30258988	30422067	38	-0.6648	SMALL-LOSS	FOCAL	2	"ARL14EP,MPPED2"
TCGA.CK.4952.01A	11	30909845	31768049	29	-0.8036	SMALL-LOSS	FOCAL	5	"DCDC1,DCDC5,DNAJC24,ELP4,IMMP1L"
TCGA.AA.A00D.01A	11	30921036	31287004	15	-0.5996	SMALL-LOSS	FOCAL	2	"DCDC1,DCDC5"
TCGA.AA.A010.01A	11	31648599	31823071	14	-1.0644	SMALL-LOSS	FOCAL	2	"ELP4,PAX6"
TCGA.AA.A00N.01A	11	31804921	32617456	38	-1.0572	SMALL-LOSS	FOCAL	5	"EIF3M,ELP4,PAX6,RCN1,WT1"
TCGA.A6.3810.01A	11	31811473	31823071	7	-0.6414	SMALL-LOSS	FOCAL	1	PAX6
TCGA.AG.3909.01A	11	31811473	31823071	7	-1.0976	SMALL-LOSS	FOCAL	1	PAX6
TCGA.AF.3914.01A	11	31811473	31827858	9	-1.0977	SMALL-LOSS	FOCAL	1	PAX6
TCGA.AG.4009.01A	11	31812251	31824201	7	-1.14	SMALL-LOSS	FOCAL	1	PAX6
TCGA.AA.3850	11	32068175	32070270	8	-0.87055	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	32259844	32266858	7	-0.56675	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	11	32308419	32309706	5	-0.7367	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	32308419	32322023	9	-0.65055	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	11	32452024	32623777	13	-0.5445	SMALL-LOSS	FOCAL	3	"CCDC73,EIF3M,WT1"
TCGA.CK.5914.01A	11	32456229	32623241	14	-0.9664	SMALL-LOSS	FOCAL	2	"EIF3M,WT1"
TCGA.AA.A00N.01A	11	32852039	32861601	4	-1.3004	SMALL-LOSS	FOCAL	1	PRRG4
TCGA.AG.3909.01A	11	32852039	32861601	4	-0.7631	SMALL-LOSS	FOCAL	1	PRRG4
TCGA.AA.A010.01A	11	32861601	32956250	7	-0.7732	SMALL-LOSS	FOCAL	2	"PRRG4,QSER1"
TCGA.AA.A010.01A	11	33038032	33054836	8	-1.1242	SMALL-LOSS	FOCAL	1	DEPDC7
TCGA.G4.6306	11	33388480	33423589	16	-0.5306	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	33731644	34110874	24	-0.5222	SMALL-LOSS	FOCAL	4	"CAPRIN1,CD59,FBXO3,LMO2"
TCGA.AG.3909.01A	11	33763404	33792242	10	-1.0246	SMALL-LOSS	FOCAL	1	FBXO3
TCGA.AG.A01W.01A	11	34112426	34121514	10	-0.6292	SMALL-LOSS	FOCAL	1	CAPRIN1
TCGA.AA.A01Q.01A	11	34163762	34192415	16	-0.6941	SMALL-LOSS	FOCAL	2	"ABTB2,NAT10"
TCGA.AA.A02K.01A	11	34181406	34188767	7	-0.6818	SMALL-LOSS	FOCAL	1	ABTB2
TCGA.AA.3850	11	34594771	34601808	8	-0.87945	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	34677877	34703681	16	-0.80035	SMALL-LOSS	FOCAL	1	EHF
TCGA.AA.3982	11	34870551	34886891	12	-0.5587	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	34901877	34914136	11	-0.98895	SMALL-LOSS	FOCAL	1	APIP
TCGA.AA.3982	11	34910076	34914136	7	-1.1797	SMALL-LOSS	FOCAL	1	APIP
TCGA.AA.3982	11	35593490	35593996	5	-1.0809	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	11	35641135	35684643	2	-0.9505	SMALL-LOSS	FOCAL	2	"FJX1,TRIM44"
TCGA.AA.3941	11	36600515	37339629	292	-1.2973	SMALL-LOSS	FOCAL	3	"C11orf74,RAG1,RAG2"
TCGA.AG.3881	11	36928310	37251133	132	-1.0421	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	37054830	37118264	24	-1.10405	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	37145359	37339629	67	-0.73245	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	37350063	41049351	1038	-0.69425	SMALL-LOSS	FOCAL	1	LRRC4C
TCGA.AA.3941	11	37350827	43241424	1880	-1.1272	SMALL-LOSS	FOCAL	1	LRRC4C
TCGA.AA.3875	11	39221260	39231643	4	-0.7275	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	41057576	43173377	810	-0.53145	SMALL-LOSS	FOCAL	1	LRRC4C
TCGA.AA.3850	11	43189132	43272261	41	-0.68215	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	43340178	43357361	12	-0.9261	SMALL-LOSS	FOCAL	1	API5
TCGA.AA.3850	11	43824306	43860931	12	-0.93755	SMALL-LOSS	FOCAL	1	HSD17B12
TCGA.AA.3864	11	43856320	43860931	3	-1.2556	SMALL-LOSS	FOCAL	1	HSD17B12
TCGA.CK.5914.01A	11	43876652	43964407	11	-0.8879	SMALL-LOSS	FOCAL	3	"ALKBH3,C11orf96,HSD17B12"
TCGA.F4.6461	11	43919693	44141849	126	-0.5813	SMALL-LOSS	FOCAL	5	"ACCS,ACCSL,ALKBH3,C11orf96,EXT2"
TCGA.AA.A00Q.01A	11	44289003	44939464	14	-0.5753	SMALL-LOSS	FOCAL	3	"ALX4,CD82,TSPAN18"
TCGA.AA.A01Q.01A	11	44331195	45245778	28	-0.5994	SMALL-LOSS	FOCAL	5	"ALX4,CD82,PRDM11,TP53I11,TSPAN18"
TCGA.A6.6653	11	44668373	44710824	27	-0.7725	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2692	11	44671893	44693192	13	-0.9695	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	11	45919588	45946050	20	-1.0214	SMALL-LOSS	FOCAL	4	"C11orf94,GYLTL1B,MAPK8IP1,PEX16"
TCGA.AA.A02K.01A	11	45919600	45931588	11	-0.6776	SMALL-LOSS	FOCAL	3	"C11orf94,MAPK8IP1,PEX16"
TCGA.AG.3909.01A	11	45923471	45932380	12	-0.5982	SMALL-LOSS	FOCAL	3	"C11orf94,MAPK8IP1,PEX16"
TCGA.AF.3914.01A	11	45928079	45937725	10	-0.7796	SMALL-LOSS	FOCAL	2	"C11orf94,PEX16"
TCGA.AZ.4684.01A	11	45957146	45959661	3	-1.0589	SMALL-LOSS	FOCAL	1	PHF21A
TCGA.AG.A01W.01A	11	46290434	46344347	7	-0.679	SMALL-LOSS	FOCAL	1	CREB3L1
TCGA.AA.A00N.01A	11	46299626	46406668	35	-0.5539	SMALL-LOSS	FOCAL	4	"CHRM4,CREB3L1,DGKZ,MDK"
TCGA.CK.5914.01A	11	46299626	46419003	35	-0.5664	SMALL-LOSS	FOCAL	5	"AMBRA1,CHRM4,CREB3L1,DGKZ,MDK"
TCGA.A6.6653	11	46332892	46442982	9	-0.5841	SMALL-LOSS	FOCAL	5	"AMBRA1,CHRM4,CREB3L1,DGKZ,MDK"
TCGA.AG.3909.01A	11	46333824	46397816	15	-0.5605	SMALL-LOSS	FOCAL	2	"CREB3L1,DGKZ"
TCGA.AG.4009.01A	11	46388789	46397816	11	-0.7596	SMALL-LOSS	FOCAL	1	DGKZ
TCGA.AA.A01Q.01A	11	46388789	46404098	17	-0.6231	SMALL-LOSS	FOCAL	2	"DGKZ,MDK"
TCGA.AA.A02K.01A	11	46400490	46406622	5	-0.8268	SMALL-LOSS	FOCAL	3	"CHRM4,DGKZ,MDK"
TCGA.AA.A00N.01A	11	46829532	46886602	11	-0.5644	SMALL-LOSS	FOCAL	2	"CKAP5,LRP4"
TCGA.AA.A010.01A	11	46890134	46921377	25	-0.7691	SMALL-LOSS	FOCAL	1	LRP4
TCGA.AA.A00N.01A	11	46903205	47254316	49	-0.5757	SMALL-LOSS	FOCAL	5	"ARFGAP2,C11orf49,DDB2,LRP4,PACSIN3"
TCGA.AG.4009.01A	11	46911503	46924303	14	-1.1292	SMALL-LOSS	FOCAL	1	LRP4
TCGA.AG.A01W.01A	11	47158263	47240009	25	-0.6245	SMALL-LOSS	FOCAL	4	"ARFGAP2,C11orf49,DDB2,PACSIN3"
TCGA.AG.3909.01A	11	47179312	47197347	12	-0.6048	SMALL-LOSS	FOCAL	2	"ARFGAP2,C11orf49"
TCGA.AA.A010.01A	11	47188313	47204005	15	-0.7627	SMALL-LOSS	FOCAL	2	"ARFGAP2,PACSIN3"
TCGA.AA.A00N.01A	11	47281932	47303099	13	-0.9738	SMALL-LOSS	FOCAL	2	"MADD,NR1H3"
TCGA.AA.A01Q.01A	11	47283421	47303099	11	-0.7223	SMALL-LOSS	FOCAL	2	"MADD,NR1H3"
TCGA.AG.4009.01A	11	47290069	47300492	7	-0.6701	SMALL-LOSS	FOCAL	2	"MADD,NR1H3"
TCGA.AA.A01Q.01A	11	47348231	47350556	3	-0.7227	SMALL-LOSS	FOCAL	1	MADD
TCGA.AA.A010.01A	11	47360815	47399785	19	-1.1124	SMALL-LOSS	FOCAL	2	"MYBPC3,SPI1"
TCGA.AG.4009.01A	11	47374109	47381407	3	-1.08	SMALL-LOSS	FOCAL	2	"MYBPC3,SPI1"
TCGA.AA.A01F.01A	11	47380356	47399785	4	-0.595	SMALL-LOSS	FOCAL	1	SPI1
TCGA.AG.3725	11	47394304	47396702	3	-1.0581	SMALL-LOSS	FOCAL	1	SPI1
TCGA.AA.A01Q.01A	11	47431619	47447372	14	-0.8336	SMALL-LOSS	FOCAL	2	"PSMC3,SLC39A13"
TCGA.AA.A01F.01A	11	47441788	47470325	15	-0.6289	SMALL-LOSS	FOCAL	2	"PSMC3,RAPSN"
TCGA.AA.A01I.01A	11	47496836	47744611	51	-0.7283	SMALL-LOSS	FOCAL	9	"AGBL2,C1QTNF4,CELF1,FAM180B,FNBP4,KBTBD4,MTCH2,NDUFS3,PTPMT1"
TCGA.CK.5914.01A	11	47587188	47605817	11	-1.2622	SMALL-LOSS	FOCAL	3	"KBTBD4,NDUFS3,PTPMT1"
TCGA.AG.3909.01A	11	47591205	47598951	5	-1.2109	SMALL-LOSS	FOCAL	2	"KBTBD4,PTPMT1"
TCGA.AG.4009.01A	11	47591205	47605817	10	-0.9778	SMALL-LOSS	FOCAL	3	"KBTBD4,NDUFS3,PTPMT1"
TCGA.AA.A00N.01A	11	47591205	47660224	22	-1.2933	SMALL-LOSS	FOCAL	6	"C1QTNF4,FAM180B,KBTBD4,MTCH2,NDUFS3,PTPMT1"
TCGA.AA.A01Q.01A	11	47594450	47605817	8	-0.6628	SMALL-LOSS	FOCAL	3	"KBTBD4,NDUFS3,PTPMT1"
TCGA.AG.A01J.01A	11	47597095	47839556	72	-0.6359	SMALL-LOSS	FOCAL	8	"AGBL2,C1QTNF4,FAM180B,FNBP4,KBTBD4,MTCH2,NDUFS3,NUP160"
TCGA.AA.3509.01A	11	47644219	47701482	18	-0.8673	SMALL-LOSS	FOCAL	2	"AGBL2,MTCH2"
TCGA.AG.A01W.01A	11	47714713	47732620	6	-0.7352	SMALL-LOSS	FOCAL	1	AGBL2
TCGA.CK.5914.01A	11	47726057	47807957	25	-0.5609	SMALL-LOSS	FOCAL	3	"AGBL2,FNBP4,NUP160"
TCGA.CK.5914.01A	11	47861395	47869362	3	-0.8728	SMALL-LOSS	FOCAL	1	NUP160
TCGA.AA.A01F.01A	11	47869362	48134272	4	-0.7264	SMALL-LOSS	FOCAL	2	"NUP160,PTPRJ"
TCGA.A6.3810.01A	11	48175294	48184970	4	-0.5314	SMALL-LOSS	FOCAL	1	PTPRJ
TCGA.A6.2671	11	49111466	49136598	3	-1.279	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D0	11	49403224	49571029	14	-0.5174	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A020	11	50146435	50751357	50	-0.9043	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2678	11	50171876	50751357	46	-0.6806	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3591	11	51192869	55355721	136	-0.6064	SMALL-LOSS	FOCAL	7	"OR4A15,OR4A16,OR4A5,OR4C15,OR4C16,OR4C46,TRIM48"
TCGA.EI.7004	11	51205140	51238711	7	-0.5669	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AAT4	11	55444867	55587456	40	-1.0512	SMALL-LOSS	FOCAL	4	"OR5D13,OR5D14,OR5D18,OR5L1"
TCGA.AD.6901	11	56347635	56940533	197	-0.7044	SMALL-LOSS	FOCAL	7	"OR5AK2,OR5AP2,OR5AR1,OR5M1,OR9G1,OR9G4,OR9G9"
TCGA.CI.6622	11	56421196	56626310	69	-0.6455	SMALL-LOSS	FOCAL	4	"OR5AR1,OR9G1,OR9G4,OR9G9"
TCGA.CK.5914.01A	11	57004239	57114524	29	-0.7867	SMALL-LOSS	FOCAL	4	"APLNR,P2RX3,SSRP1,TNKS1BP1"
TCGA.AG.3909.01A	11	57067948	57105988	26	-0.6923	SMALL-LOSS	FOCAL	3	"P2RX3,SSRP1,TNKS1BP1"
TCGA.AA.A01Q.01A	11	57067948	57114524	28	-0.6116	SMALL-LOSS	FOCAL	3	"P2RX3,SSRP1,TNKS1BP1"
TCGA.AG.4009.01A	11	57085227	57095731	8	-0.793	SMALL-LOSS	FOCAL	2	"SSRP1,TNKS1BP1"
TCGA.AF.3914.01A	11	57087524	57098268	9	-1.1517	SMALL-LOSS	FOCAL	2	"SSRP1,TNKS1BP1"
TCGA.AA.A01I.01A	11	57093859	57105988	14	-0.9837	SMALL-LOSS	FOCAL	2	"P2RX3,SSRP1"
TCGA.AA.A010.01A	11	57093859	57114524	16	-0.8573	SMALL-LOSS	FOCAL	2	"P2RX3,SSRP1"
TCGA.AA.A00N.01A	11	57114011	57308905	50	-0.5527	SMALL-LOSS	FOCAL	7	"P2RX3,PRG2,PRG3,RTN4RL2,SLC43A1,SLC43A3,TIMM10"
TCGA.AA.A01I.01A	11	57144276	57154910	6	-0.8379	SMALL-LOSS	FOCAL	2	"PRG2,PRG3"
TCGA.AA.A01Q.01A	11	57183999	57265176	19	-0.5939	SMALL-LOSS	FOCAL	3	"RTN4RL2,SLC43A1,SLC43A3"
TCGA.AG.3909.01A	11	57185180	57281384	19	-0.8684	SMALL-LOSS	FOCAL	3	"RTN4RL2,SLC43A1,SLC43A3"
TCGA.CK.5914.01A	11	57188393	57281384	19	-0.5862	SMALL-LOSS	FOCAL	3	"RTN4RL2,SLC43A1,SLC43A3"
TCGA.AG.3909.01A	11	57327760	57449852	16	-0.5396	SMALL-LOSS	FOCAL	5	"CLP1,SERPING1,UBE2L6,YPEL4,ZDHHC5"
TCGA.AA.A00N.01A	11	57367320	57518506	40	-0.6635	SMALL-LOSS	FOCAL	8	"BTBD18,C11orf31,CLP1,MED19,SERPING1,TMX2,YPEL4,ZDHHC5"
TCGA.CK.5914.01A	11	57413429	57428225	6	-1.1062	SMALL-LOSS	FOCAL	2	"CLP1,YPEL4"
TCGA.AA.A010.01A	11	57426972	57472425	15	-0.702	SMALL-LOSS	FOCAL	3	"CLP1,MED19,ZDHHC5"
TCGA.AG.3909.01A	11	57472024	57507534	9	-0.5696	SMALL-LOSS	FOCAL	2	"MED19,TMX2"
TCGA.CK.5914.01A	11	57505014	57518506	12	-1.0941	SMALL-LOSS	FOCAL	3	"BTBD18,C11orf31,TMX2"
TCGA.CK.5915	11	57548880	57887281	100	-0.7919	SMALL-LOSS	FOCAL	4	"CTNND1,OR6Q1,OR9I1,OR9Q1"
TCGA.EI.7004	11	57602177	58105053	179	-0.9553	SMALL-LOSS	FOCAL	8	"OR10Q1,OR10W1,OR1S1,OR1S2,OR6Q1,OR9I1,OR9Q1,OR9Q2"
TCGA.AA.3850	11	57784306	57787038	5	-0.97655	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	11	58294890	58352242	10	-0.5275	SMALL-LOSS	FOCAL	2	"LPXN,ZFP91"
TCGA.AA.A00N.01A	11	58331550	58352242	6	-1.0844	SMALL-LOSS	FOCAL	2	"LPXN,ZFP91"
TCGA.CK.5914.01A	11	58331550	58352242	6	-0.6531	SMALL-LOSS	FOCAL	2	"LPXN,ZFP91"
TCGA.AA.A010.01A	11	58377264	58491833	16	-0.5862	SMALL-LOSS	FOCAL	3	"CNTF,GLYAT,ZFP91"
TCGA.AG.3909.01A	11	58877083	58919756	5	-1.192	SMALL-LOSS	FOCAL	2	"FAM111A,FAM111B"
TCGA.AA.A010.01A	11	58919183	58962644	9	-1.0842	SMALL-LOSS	FOCAL	2	"DTX4,FAM111A"
TCGA.DM.A1HB	11	59033611	59052768	4	-0.8142	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	11	59344052	59424984	26	-1.172	SMALL-LOSS	FOCAL	2	"OSBP,PATL1"
TCGA.CK.5914.01A	11	59344052	59434285	30	-0.8748	SMALL-LOSS	FOCAL	2	"OSBP,PATL1"
TCGA.AG.4009.01A	11	59375939	59424984	16	-1.0207	SMALL-LOSS	FOCAL	2	"OSBP,PATL1"
TCGA.AA.A02H.01A	11	59405792	59556287	18	-0.5207	SMALL-LOSS	FOCAL	3	"OR10V1,PATL1,STX3"
TCGA.AA.A00N.01A	11	59564701	59577269	4	-0.5514	SMALL-LOSS	FOCAL	2	"MRPL16,STX3"
TCGA.AG.3909.01A	11	59807894	59856175	11	-0.6212	SMALL-LOSS	FOCAL	3	"MS4A2,MS4A3,OOSP2"
TCGA.AA.A00N.01A	11	59828585	59860205	10	-1.0732	SMALL-LOSS	FOCAL	2	"MS4A2,MS4A3"
TCGA.DC.6158	11	59868648	59875451	3	-1.1292	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	59939580	60048068	7	-0.7131	SMALL-LOSS	FOCAL	2	"MS4A4A,MS4A6A"
TCGA.AA.A00N.01A	11	60197127	60235673	11	-0.8021	SMALL-LOSS	FOCAL	2	"MS4A1,MS4A5"
TCGA.CK.5914.01A	11	60198222	60235673	10	-0.5789	SMALL-LOSS	FOCAL	2	"MS4A1,MS4A5"
TCGA.AG.3909.01A	11	60215100	60235673	7	-0.8281	SMALL-LOSS	FOCAL	2	"MS4A1,MS4A5"
TCGA.AG.4009.01A	11	60264752	60285516	7	-1.0119	SMALL-LOSS	FOCAL	2	"MS4A12,MS4A13"
TCGA.AA.A02H.01A	11	60264752	60296785	10	-0.7069	SMALL-LOSS	FOCAL	2	"MS4A12,MS4A13"
TCGA.CK.5914.01A	11	60264752	60296785	10	-1.3143	SMALL-LOSS	FOCAL	2	"MS4A12,MS4A13"
TCGA.AA.A00N.01A	11	60292643	60309921	3	-0.7789	SMALL-LOSS	FOCAL	1	MS4A13
TCGA.AA.A00Q.01A	11	60470802	60543026	9	-0.685	SMALL-LOSS	FOCAL	2	"MS4A15,MS4A8"
TCGA.AA.A02H.01A	11	60559689	60567240	5	-0.5789	SMALL-LOSS	FOCAL	1	MS4A10
TCGA.AA.A010.01A	11	60619986	60703295	33	-0.968	SMALL-LOSS	FOCAL	5	"PRPF19,PTGDR2,TMEM109,TMEM132A,ZP1"
TCGA.AA.A00N.01A	11	60665281	60785224	42	-0.6632	SMALL-LOSS	FOCAL	5	"CD6,PRPF19,SLC15A3,TMEM109,TMEM132A"
TCGA.AG.4009.01A	11	60687114	60713973	19	-0.5805	SMALL-LOSS	FOCAL	3	"SLC15A3,TMEM109,TMEM132A"
TCGA.AG.A01W.01A	11	60833000	60837511	5	-0.7395	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	11	60861939	60881173	16	-0.5547	SMALL-LOSS	FOCAL	1	CD5
TCGA.AA.A00Q.01A	11	60892465	60906154	6	-0.6619	SMALL-LOSS	FOCAL	2	"CD5,VPS37C"
TCGA.AG.A01W.01A	11	60961656	61080115	21	-0.5674	SMALL-LOSS	FOCAL	5	"DDB1,PGA3,PGA4,PGA5,VWCE"
TCGA.AG.3611.01A	11	61031933	61041962	7	-0.612	SMALL-LOSS	FOCAL	1	VWCE
TCGA.AA.A00N.01A	11	61041962	61098978	30	-1.0088	SMALL-LOSS	FOCAL	2	"DDB1,VWCE"
TCGA.AG.3909.01A	11	61045821	61083718	19	-0.6732	SMALL-LOSS	FOCAL	2	"DDB1,VWCE"
TCGA.AA.A010.01A	11	61068229	61094201	17	-0.5868	SMALL-LOSS	FOCAL	1	DDB1
TCGA.AG.3909.01A	11	61089028	61102105	10	-1.1491	SMALL-LOSS	FOCAL	2	"DDB1,TKFC"
TCGA.CK.5914.01A	11	61123961	61213361	22	-0.5788	SMALL-LOSS	FOCAL	5	"CPSF7,CYB561A3,SDHAF2,TMEM138,TMEM216"
TCGA.AA.A00N.01A	11	61124596	61213361	21	-0.6774	SMALL-LOSS	FOCAL	5	"CPSF7,CYB561A3,SDHAF2,TMEM138,TMEM216"
TCGA.AA.A010.01A	11	61252765	61543507	43	-1.3183	SMALL-LOSS	FOCAL	5	"DAGLA,LRRC10B,MYRF,PPP1R32,SYT7"
TCGA.AA.A01Q.01A	11	61286050	61731495	93	-0.6678	SMALL-LOSS	FOCAL	10	"BEST1,DAGLA,FADS1,FADS2,FADS3,FEN1,MYRF,RAB3IL1,SYT7,TMEM258"
TCGA.AA.A00Q.01A	11	61318799	61498740	10	-0.6909	SMALL-LOSS	FOCAL	2	"DAGLA,SYT7"
TCGA.AA.A010.01A	11	61543757	61580674	28	-0.566	SMALL-LOSS	FOCAL	4	"FADS1,FEN1,MYRF,TMEM258"
TCGA.AA.A010.01A	11	61644300	61675475	14	-1.2663	SMALL-LOSS	FOCAL	2	"FADS3,RAB3IL1"
TCGA.AA.3509.01A	11	61959481	62124422	17	-0.5252	SMALL-LOSS	FOCAL	6	"ASRGL1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2"
TCGA.AA.A010.01A	11	62037620	62066376	6	-0.9148	SMALL-LOSS	FOCAL	2	"SCGB1D4,SCGB2A2"
TCGA.AG.3909.01A	11	62038323	62124422	8	-0.5278	SMALL-LOSS	FOCAL	3	"ASRGL1,SCGB1D4,SCGB2A2"
TCGA.AG.A01W.01A	11	62052136	62121607	31	-0.7811	SMALL-LOSS	FOCAL	2	"ASRGL1,SCGB1D4"
TCGA.CK.5914.01A	11	62105401	62201292	10	-0.776	SMALL-LOSS	FOCAL	3	"AHNAK,ASRGL1,SCGB1A1"
TCGA.AG.A01W.01A	11	62149817	62163360	13	-0.639	SMALL-LOSS	FOCAL	1	ASRGL1
TCGA.AG.A01W.01A	11	62189883	62218567	14	-0.538	SMALL-LOSS	FOCAL	2	"AHNAK,SCGB1A1"
TCGA.AG.A01W.01A	11	62259384	62302868	14	-0.8033	SMALL-LOSS	FOCAL	1	AHNAK
TCGA.AA.A02K.01A	11	62284207	62295560	10	-0.5794	SMALL-LOSS	FOCAL	1	AHNAK
TCGA.AA.A004.01A	11	62299925	62344626	15	-0.7027	SMALL-LOSS	FOCAL	3	"AHNAK,EEF1G,TUT1"
TCGA.AG.A015.01A	11	62302473	62365457	28	-0.6641	SMALL-LOSS	FOCAL	4	"AHNAK,EEF1G,MTA2,TUT1"
TCGA.AG.A01W.01A	11	62318922	62322510	4	-1.2001	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01J.01A	11	62338395	62389278	43	-0.7353	SMALL-LOSS	FOCAL	6	"B3GAT3,EEF1G,EML3,MTA2,ROM1,TUT1"
TCGA.AA.A010.01A	11	62356452	62368061	15	-0.6353	SMALL-LOSS	FOCAL	2	"MTA2,TUT1"
TCGA.AG.A01W.01A	11	62363113	62412453	10	-0.831	SMALL-LOSS	FOCAL	5	"B3GAT3,EML3,GANAB,MTA2,ROM1"
TCGA.AA.A010.01A	11	62393265	62407082	17	-0.8119	SMALL-LOSS	FOCAL	1	GANAB
TCGA.AA.A010.01A	11	62474071	62483273	6	-0.6207	SMALL-LOSS	FOCAL	3	"BSCL2,GNG3,HNRNPUL2"
TCGA.AA.A00N.01A	11	62494054	62554864	19	-0.5245	SMALL-LOSS	FOCAL	5	"HNRNPUL2,POLR2G,TAF6L,TTC9C,ZBTB3"
TCGA.AG.A015.01A	11	62505746	62533672	8	-0.8341	SMALL-LOSS	FOCAL	3	"POLR2G,TTC9C,ZBTB3"
TCGA.AG.3909.01A	11	62543798	62574890	24	-1.2036	SMALL-LOSS	FOCAL	5	"NXF1,STX5,TAF6L,TMEM179B,TMEM223"
TCGA.AA.A01Q.01A	11	62556454	62574890	17	-0.7955	SMALL-LOSS	FOCAL	4	"NXF1,STX5,TMEM179B,TMEM223"
TCGA.AF.3914.01A	11	62556454	62574890	18	-1.1999	SMALL-LOSS	FOCAL	4	"NXF1,STX5,TMEM179B,TMEM223"
TCGA.AG.4009.01A	11	62556454	62574890	17	-0.833	SMALL-LOSS	FOCAL	4	"NXF1,STX5,TMEM179B,TMEM223"
TCGA.AG.A015.01A	11	62603140	62655570	9	-0.6925	SMALL-LOSS	FOCAL	2	"SLC3A2,WDR74"
TCGA.AA.3941	11	62817082	63231258	96	-0.6072	SMALL-LOSS	FOCAL	5	"HRASLS5,SLC22A10,SLC22A24,SLC22A25,SLC22A9"
TCGA.AG.A01W.01A	11	63170532	63228826	7	-0.7544	SMALL-LOSS	FOCAL	1	SLC22A9
TCGA.AA.A004.01A	11	63413946	63486134	7	-1.2244	SMALL-LOSS	FOCAL	2	"ATL3,RTN3"
TCGA.AF.3914.01A	11	63523516	63683763	27	-0.8327	SMALL-LOSS	FOCAL	5	"C11orf84,C11orf95,MARK2,RCOR2,RTN3"
TCGA.AG.A01W.01A	11	63675247	63728048	14	-0.622	SMALL-LOSS	FOCAL	3	"MARK2,NAA40,RCOR2"
TCGA.AA.A010.01A	11	63706471	63986672	40	-0.6522	SMALL-LOSS	FOCAL	7	"COX8A,FERMT3,FLRT1,MACROD1,NAA40,OTUB1,STIP1"
TCGA.AG.3909.01A	11	63883700	63978036	16	-0.9606	SMALL-LOSS	FOCAL	4	"FERMT3,FLRT1,MACROD1,STIP1"
TCGA.CK.5914.01A	11	63883700	64011234	48	-0.8485	SMALL-LOSS	FOCAL	9	"DNAJC4,FERMT3,FKBP2,FLRT1,MACROD1,NUDT22,STIP1,TRPT1,VEGFB"
TCGA.AA.A004.01A	11	63960513	63967374	7	-1.2628	SMALL-LOSS	FOCAL	1	STIP1
TCGA.AF.3914.01A	11	63988461	63995000	9	-0.5957	SMALL-LOSS	FOCAL	3	"FERMT3,NUDT22,TRPT1"
TCGA.AF.3914.01A	11	63996702	64022659	19	-1.2853	SMALL-LOSS	FOCAL	6	"DNAJC4,FKBP2,NUDT22,PLCB3,PPP1R14B,VEGFB"
TCGA.AF.3914.01A	11	64051635	64088094	25	-0.997	SMALL-LOSS	FOCAL	7	"BAD,ESRRA,GPR137,KCNK4,PRDX5,TEX40,TRMT112"
TCGA.AG.3909.01A	11	64082166	64124461	16	-0.782	SMALL-LOSS	FOCAL	4	"CCDC88B,ESRRA,PRDX5,TRMT112"
TCGA.AA.A010.01A	11	64107668	64138744	32	-0.725	SMALL-LOSS	FOCAL	2	"CCDC88B,RPS6KA4"
TCGA.AG.A01W.01A	11	64172227	64260750	23	-0.6158	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3861.01A	11	64326585	64409993	24	-1.2031	SMALL-LOSS	FOCAL	3	"NRXN2,SLC22A11,SLC22A12"
TCGA.AA.3862.01A	11	64326585	64409993	24	-0.9503	SMALL-LOSS	FOCAL	3	"NRXN2,SLC22A11,SLC22A12"
TCGA.AG.A00C.01A	11	64360199	64366243	3	-0.8246	SMALL-LOSS	FOCAL	1	SLC22A12
TCGA.AA.A01Q.01A	11	64367809	64465154	25	-0.8777	SMALL-LOSS	FOCAL	2	"NRXN2,SLC22A12"
TCGA.AG.A01W.01A	11	64454329	64520848	18	-0.642	SMALL-LOSS	FOCAL	3	"NRXN2,PYGM,RASGRP2"
TCGA.AA.A010.01A	11	64460234	64480461	4	-1.2138	SMALL-LOSS	FOCAL	1	NRXN2
TCGA.AA.A00N.01A	11	64460234	64535548	39	-0.8011	SMALL-LOSS	FOCAL	4	"NRXN2,PYGM,RASGRP2,SF1"
TCGA.AA.A01Q.01A	11	64504173	64527119	23	-0.8975	SMALL-LOSS	FOCAL	2	"PYGM,RASGRP2"
TCGA.AG.4009.01A	11	64506783	64577105	42	-0.6891	SMALL-LOSS	FOCAL	5	"MAP4K2,MEN1,PYGM,RASGRP2,SF1"
TCGA.CK.5914.01A	11	64507845	64520999	13	-1.0146	SMALL-LOSS	FOCAL	2	"PYGM,RASGRP2"
TCGA.AA.A01F.01A	11	64535548	64540843	5	-1.0787	SMALL-LOSS	FOCAL	1	SF1
TCGA.AA.A01Q.01A	11	64536442	64678056	70	-0.7734	SMALL-LOSS	FOCAL	6	"ATG2A,CDC42BPG,EHD1,MAP4K2,MEN1,SF1"
TCGA.AA.A00N.01A	11	64556993	64726725	89	-0.5855	SMALL-LOSS	FOCAL	8	"ATG2A,C11orf85,CDC42BPG,EHD1,GPHA2,MAP4K2,MEN1,PPP2R5B"
TCGA.AF.3914.01A	11	64563697	64575312	15	-1.1248	SMALL-LOSS	FOCAL	2	"MAP4K2,MEN1"
TCGA.AA.A01F.01A	11	64577105	64594753	5	-0.5861	SMALL-LOSS	FOCAL	2	"CDC42BPG,MEN1"
TCGA.AG.A01W.01A	11	64577240	64607908	7	-0.9412	SMALL-LOSS	FOCAL	2	"CDC42BPG,MEN1"
TCGA.AA.A010.01A	11	64593883	64627349	24	-0.7346	SMALL-LOSS	FOCAL	2	"CDC42BPG,EHD1"
TCGA.AA.A00F.01A	11	64607575	64609074	3	-0.7432	SMALL-LOSS	FOCAL	1	CDC42BPG
TCGA.AA.A00L.01A	11	64876740	64883912	5	-0.6073	SMALL-LOSS	FOCAL	3	"TM7SF2,VPS51,ZNHIT2"
TCGA.AG.4009.01A	11	65088348	65123252	13	-0.6017	SMALL-LOSS	FOCAL	3	"CDC42EP2,DPF2,TIGD3"
TCGA.AA.A010.01A	11	65107807	65123252	10	-1.178	SMALL-LOSS	FOCAL	2	"DPF2,TIGD3"
TCGA.AG.3909.01A	11	65108818	65149305	12	-1.1708	SMALL-LOSS	FOCAL	3	"DPF2,SLC25A45,TIGD3"
TCGA.AG.3891.01A	11	65178664	65299006	7	-0.5252	SMALL-LOSS	FOCAL	2	"FRMD8,SCYL1"
TCGA.AG.4009.01A	11	65293028	65429121	77	-0.8814	SMALL-LOSS	FOCAL	10	"EHBP1L1,FAM89B,KCNK7,LTBP3,MAP3K11,PCNXL3,RELA,SCYL1,SIPA1,SSSCA1"
TCGA.AF.3914.01A	11	65299006	65374125	43	-1.2944	SMALL-LOSS	FOCAL	7	"EHBP1L1,FAM89B,KCNK7,LTBP3,MAP3K11,SCYL1,SSSCA1"
TCGA.AG.3909.01A	11	65480185	65487548	7	-1.176	SMALL-LOSS	FOCAL	2	"KAT5,RNASEH2C"
TCGA.DC.6158	11	65570516	65581751	9	-0.6767	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	65601454	65628176	15	-1.2712	SMALL-LOSS	FOCAL	3	"CFL1,MUS81,SNX32"
TCGA.AG.3909.01A	11	65616902	65623369	12	-1.0831	SMALL-LOSS	FOCAL	2	"CFL1,SNX32"
TCGA.AA.A01Q.01A	11	65628764	65658291	30	-1.0286	SMALL-LOSS	FOCAL	5	"CCDC85B,CTSW,EFEMP2,FIBP,MUS81"
TCGA.AG.4009.01A	11	65629640	65660355	25	-0.974	SMALL-LOSS	FOCAL	6	"CCDC85B,CTSW,EFEMP2,FIBP,FOSL1,MUS81"
TCGA.AA.A01Q.01A	11	65660355	65688301	9	-0.6769	SMALL-LOSS	FOCAL	3	"C11orf68,DRAP1,FOSL1"
TCGA.AG.A015.01A	11	65721000	65734701	8	-0.9559	SMALL-LOSS	FOCAL	2	"SART1,TSGA10IP"
TCGA.AA.A01F.01A	11	65731532	65766783	13	-0.6092	SMALL-LOSS	FOCAL	2	"EIF1AD,SART1"
TCGA.AG.3909.01A	11	65766033	65784273	9	-1.0379	SMALL-LOSS	FOCAL	4	"BANF1,CATSPER1,CST6,EIF1AD"
TCGA.AG.4009.01A	11	65766033	65784273	8	-0.9536	SMALL-LOSS	FOCAL	4	"BANF1,CATSPER1,CST6,EIF1AD"
TCGA.AA.A010.01A	11	65766033	65792597	15	-1.2265	SMALL-LOSS	FOCAL	4	"BANF1,CATSPER1,CST6,EIF1AD"
TCGA.CK.5914.01A	11	65766033	65836099	35	-0.8509	SMALL-LOSS	FOCAL	6	"BANF1,CATSPER1,CST6,EIF1AD,GAL3ST3,SF3B2"
TCGA.AG.4009.01A	11	65826663	65836099	9	-0.9549	SMALL-LOSS	FOCAL	1	SF3B2
TCGA.AA.A01Q.01A	11	66026074	66113961	43	-0.8713	SMALL-LOSS	FOCAL	9	"B4GAT1,BRMS1,CD248,CNIH2,KLC2,RAB1B,RIN1,TMEM151A,YIF1A"
TCGA.AG.4009.01A	11	66029234	66113961	36	-0.6554	SMALL-LOSS	FOCAL	9	"B4GAT1,BRMS1,CD248,CNIH2,KLC2,RAB1B,RIN1,TMEM151A,YIF1A"
TCGA.AG.4009.01A	11	66189584	66240695	16	-0.6917	SMALL-LOSS	FOCAL	3	"MRPL11,NPAS4,PELI3"
TCGA.AG.3909.01A	11	66189870	66191031	4	-0.9419	SMALL-LOSS	FOCAL	1	NPAS4
TCGA.AG.3909.01A	11	66206052	66238664	4	-0.9089	SMALL-LOSS	FOCAL	2	"MRPL11,PELI3"
TCGA.AA.A00N.01A	11	66206052	66255335	13	-0.7439	SMALL-LOSS	FOCAL	3	"DPP3,MRPL11,PELI3"
TCGA.AA.A00Q.01A	11	66297259	66314377	7	-0.5973	SMALL-LOSS	FOCAL	3	"ACTN3,BBS1,ZDHHC24"
TCGA.AA.A00N.01A	11	66314377	66391304	32	-0.8642	SMALL-LOSS	FOCAL	6	"ACTN3,CCDC87,CCS,CTSF,RBM14,RBM14-RBM4"
TCGA.AA.A010.01A	11	66318658	66367903	27	-0.9562	SMALL-LOSS	FOCAL	4	"ACTN3,CCDC87,CCS,CTSF"
TCGA.AF.3914.01A	11	66321951	66361050	21	-0.5587	SMALL-LOSS	FOCAL	4	"ACTN3,CCDC87,CCS,CTSF"
TCGA.AA.A00L.01A	11	66331342	66334933	6	-0.5929	SMALL-LOSS	FOCAL	1	CTSF
TCGA.AA.A01Q.01A	11	66335418	66361050	4	-0.6147	SMALL-LOSS	FOCAL	3	"CCDC87,CCS,CTSF"
TCGA.AG.4009.01A	11	66335418	66366890	6	-0.5772	SMALL-LOSS	FOCAL	3	"CCDC87,CCS,CTSF"
TCGA.AA.A00N.01A	11	66436048	66478016	28	-0.7006	SMALL-LOSS	FOCAL	2	"RBM4B,SPTBN2"
TCGA.AA.A01Q.01A	11	66463727	66472022	7	-0.9353	SMALL-LOSS	FOCAL	1	SPTBN2
TCGA.AA.A010.01A	11	66555584	66589986	9	-0.5949	SMALL-LOSS	FOCAL	1	C11orf80
TCGA.AA.A00N.01A	11	66583477	66631238	20	-0.7386	SMALL-LOSS	FOCAL	4	"C11orf80,LRFN4,PC,RCE1"
TCGA.AG.4009.01A	11	66589986	66620673	14	-0.6321	SMALL-LOSS	FOCAL	3	"C11orf80,PC,RCE1"
TCGA.AA.A010.01A	11	66633616	66811062	13	-1.2615	SMALL-LOSS	FOCAL	3	"C11orf86,PC,SYT12"
TCGA.AA.A00N.01A	11	66982804	67022305	15	-1.0838	SMALL-LOSS	FOCAL	1	KDM2A
TCGA.AA.A00N.01A	11	67034170	67119382	30	-0.5252	SMALL-LOSS	FOCAL	4	"ADRBK1,ANKRD13D,POLD4,SSH3"
TCGA.AA.A01Q.01A	11	67044685	67066463	15	-0.9593	SMALL-LOSS	FOCAL	2	"ADRBK1,ANKRD13D"
TCGA.AG.4009.01A	11	67046611	67072213	15	-0.617	SMALL-LOSS	FOCAL	3	"ADRBK1,ANKRD13D,SSH3"
TCGA.AA.A01Q.01A	11	67159466	67176403	16	-0.9111	SMALL-LOSS	FOCAL	3	"PPP1CA,RAD9A,TBC1D10C"
TCGA.AG.4009.01A	11	67352572	67402235	17	-0.6474	SMALL-LOSS	FOCAL	4	"GSTP1,NDUFV1,NUDT8,TBX10"
TCGA.AA.A01Q.01A	11	67374414	67400372	14	-0.6245	SMALL-LOSS	FOCAL	3	"NDUFV1,NUDT8,TBX10"
TCGA.AA.A010.01A	11	67375812	67413126	21	-1.1505	SMALL-LOSS	FOCAL	4	"ACY3,NDUFV1,NUDT8,TBX10"
TCGA.AA.A010.01A	11	67821384	67957346	23	-0.7489	SMALL-LOSS	FOCAL	2	"CHKA,SUV420H1"
TCGA.AA.A00N.01A	11	67829394	67838150	7	-1.2175	SMALL-LOSS	FOCAL	1	CHKA
TCGA.AA.A01Q.01A	11	68115277	68207208	20	-0.7229	SMALL-LOSS	FOCAL	1	LRP5
TCGA.D5.6898	11	68388587	68408288	3	-0.8225	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	68452345	68526987	17	-1.1442	SMALL-LOSS	FOCAL	3	"CPT1A,GAL,MTL5"
TCGA.AA.A00L.01A	11	68777247	68825015	5	-0.532	SMALL-LOSS	FOCAL	2	"MRGPRF,TPCN2"
TCGA.AA.A010.01A	11	69456055	69962498	26	-0.6719	SMALL-LOSS	FOCAL	6	"ANO1,CCND1,FGF19,FGF3,FGF4,ORAOV1"
TCGA.AA.3861.01A	11	70184423	71249415	83	-0.5369	SMALL-LOSS	FOCAL	7	"CTTN,DHCR7,KRTAP5-7,KRTAP5-8,NADSYN1,PPFIA1,SHANK2"
TCGA.AA.A01Q.01A	11	70255885	71209358	54	-0.62	SMALL-LOSS	FOCAL	4	"CTTN,DHCR7,NADSYN1,SHANK2"
TCGA.A6.2681	11	70896431	70910471	7	-0.7355	SMALL-LOSS	FOCAL	1	SHANK2
TCGA.AA.3667	11	70896431	70924370	12	-0.5833	SMALL-LOSS	FOCAL	1	SHANK2
TCGA.AG.A01L.01A	11	71196539	71209358	5	-1.1394	SMALL-LOSS	FOCAL	1	NADSYN1
TCGA.AG.A01W.01A	11	71406365	71411701	7	-0.9506	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	71527695	71600785	13	-0.53285	SMALL-LOSS	FOCAL	3	"DEFB108B,LOC100129216,ZNF705E"
TCGA.AG.3727	11	71550091	71570655	4	-1.2636	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	11	71583937	71584572	3	-0.9491	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	71929590	71952097	20	-0.6851	SMALL-LOSS	FOCAL	3	"FOLR2,INPPL1,PHOX2A"
TCGA.AG.4009.01A	11	71931872	71952097	17	-1.1976	SMALL-LOSS	FOCAL	3	"FOLR2,INPPL1,PHOX2A"
TCGA.CK.5914.01A	11	71940087	71952097	15	-0.5584	SMALL-LOSS	FOCAL	2	"INPPL1,PHOX2A"
TCGA.AA.A01Q.01A	11	71940479	71946115	9	-0.8193	SMALL-LOSS	FOCAL	1	INPPL1
TCGA.AA.A010.01A	11	71949066	71954822	4	-0.8802	SMALL-LOSS	FOCAL	2	"INPPL1,PHOX2A"
TCGA.AG.A01W.01A	11	71978378	72147900	44	-0.6359	SMALL-LOSS	FOCAL	1	CLPB
TCGA.AA.A00N.01A	11	72287632	72302284	20	-0.7751	SMALL-LOSS	FOCAL	1	PDE2A
TCGA.AG.4009.01A	11	72288400	72307568	17	-0.5415	SMALL-LOSS	FOCAL	1	PDE2A
TCGA.AF.3914.01A	11	72289229	72299787	14	-1.0021	SMALL-LOSS	FOCAL	1	PDE2A
TCGA.A6.3808.01A	11	72289229	72307568	19	-1.1155	SMALL-LOSS	FOCAL	1	PDE2A
TCGA.AG.A015.01A	11	72300738	72385115	5	-0.9887	SMALL-LOSS	FOCAL	1	PDE2A
TCGA.AA.A01Q.01A	11	72326043	72423264	28	-0.8012	SMALL-LOSS	FOCAL	2	"ARAP1,PDE2A"
TCGA.AA.A010.01A	11	72342052	72379262	3	-1.2103	SMALL-LOSS	FOCAL	1	PDE2A
TCGA.CK.5914.01A	11	72600825	73102127	42	-0.5341	SMALL-LOSS	FOCAL	5	"ARHGEF17,FCHSD2,P2RY2,P2RY6,RELT"
TCGA.AA.A00N.01A	11	72851029	73106140	37	-0.7728	SMALL-LOSS	FOCAL	5	"ARHGEF17,FCHSD2,P2RY2,P2RY6,RELT"
TCGA.AF.3914.01A	11	73019656	73075446	19	-0.7785	SMALL-LOSS	FOCAL	1	ARHGEF17
TCGA.AG.4009.01A	11	73022432	73078598	19	-0.7842	SMALL-LOSS	FOCAL	1	ARHGEF17
TCGA.AA.A01Q.01A	11	73057888	73076394	17	-1.1797	SMALL-LOSS	FOCAL	1	ARHGEF17
TCGA.AA.A01Q.01A	11	73076746	73106140	10	-0.6019	SMALL-LOSS	FOCAL	2	"ARHGEF17,RELT"
TCGA.AA.3860	11	73083879	73413120	62	-0.5841	SMALL-LOSS	FOCAL	4	"FAM168A,PLEKHB1,RAB6A,RELT"
TCGA.AG.3909.01A	11	73598367	73638282	10	-0.8098	SMALL-LOSS	FOCAL	1	PAAF1
TCGA.AG.4009.01A	11	73598367	73662072	11	-0.7433	SMALL-LOSS	FOCAL	2	"DNAJB13,PAAF1"
TCGA.AA.A010.01A	11	73620427	73629938	4	-1.181	SMALL-LOSS	FOCAL	1	PAAF1
TCGA.AG.A02X.01A	11	73680954	73714857	8	-1.0693	SMALL-LOSS	FOCAL	3	"DNAJB13,UCP2,UCP3"
TCGA.AA.A00N.01A	11	73824783	73850618	8	-1.3205	SMALL-LOSS	FOCAL	1	C2CD3
TCGA.AG.3909.01A	11	73824783	73850618	8	-0.6533	SMALL-LOSS	FOCAL	1	C2CD3
TCGA.CK.5914.01A	11	73824783	73881719	11	-0.6433	SMALL-LOSS	FOCAL	1	C2CD3
TCGA.AA.A010.01A	11	73984524	74062381	18	-0.5208	SMALL-LOSS	FOCAL	2	"P4HA3,PGM2L1"
TCGA.AA.A00N.01A	11	74000061	74022416	5	-0.6238	SMALL-LOSS	FOCAL	1	P4HA3
TCGA.AF.3914.01A	11	74015287	74109045	15	-0.5179	SMALL-LOSS	FOCAL	2	"P4HA3,PGM2L1"
TCGA.AG.4009.01A	11	74047650	74085412	13	-0.6497	SMALL-LOSS	FOCAL	1	PGM2L1
TCGA.AA.A00N.01A	11	74079482	74203133	7	-0.5513	SMALL-LOSS	FOCAL	3	"KCNE3,LIPT2,PGM2L1"
TCGA.AG.A01W.01A	11	74085139	74119450	12	-0.5236	SMALL-LOSS	FOCAL	1	PGM2L1
TCGA.AA.A010.01A	11	74351558	74459884	14	-1.0294	SMALL-LOSS	FOCAL	2	"CHRDL2,POLD3"
TCGA.AG.A015.01A	11	74424389	74459884	4	-0.9974	SMALL-LOSS	FOCAL	1	CHRDL2
TCGA.AA.A00N.01A	11	75046082	75150869	17	-0.6633	SMALL-LOSS	FOCAL	4	"ARRB1,GDPD5,KLHL35,RPS3"
TCGA.AA.A010.01A	11	75046082	75160881	25	-0.7862	SMALL-LOSS	FOCAL	4	"ARRB1,GDPD5,KLHL35,RPS3"
TCGA.AG.3909.01A	11	75110507	75134719	8	-1.0398	SMALL-LOSS	FOCAL	2	"KLHL35,RPS3"
TCGA.AF.3914.01A	11	75110507	75146530	12	-0.8741	SMALL-LOSS	FOCAL	3	"GDPD5,KLHL35,RPS3"
TCGA.AG.4009.01A	11	75110507	75147933	11	-0.7492	SMALL-LOSS	FOCAL	3	"GDPD5,KLHL35,RPS3"
TCGA.AA.A01Q.01A	11	75146530	75298077	20	-0.7198	SMALL-LOSS	FOCAL	3	"GDPD5,MAP6,SERPINH1"
TCGA.AG.3909.01A	11	75277343	75298077	5	-0.8049	SMALL-LOSS	FOCAL	2	"MAP6,SERPINH1"
TCGA.AA.A00N.01A	11	75277343	75319137	7	-0.6395	SMALL-LOSS	FOCAL	2	"MAP6,SERPINH1"
TCGA.AA.A01Q.01A	11	75898062	76062483	7	-0.7563	SMALL-LOSS	FOCAL	2	"PRKRIR,WNT11"
TCGA.CK.5914.01A	11	76157939	76207221	8	-0.9489	SMALL-LOSS	FOCAL	1	C11orf30
TCGA.AG.A01W.01A	11	76548831	76583001	21	-0.5358	SMALL-LOSS	FOCAL	1	ACER3
TCGA.CM.6168	11	76752247	76910318	51	-0.5336	SMALL-LOSS	FOCAL	4	"B3GNT6,CAPN5,MYO7A,OMP"
TCGA.AA.A01Q.01A	11	76795906	76866926	13	-0.6542	SMALL-LOSS	FOCAL	3	"CAPN5,MYO7A,OMP"
TCGA.AA.3967.01A	11	76841593	76925610	41	-0.694	SMALL-LOSS	FOCAL	1	MYO7A
TCGA.AG.A015.01A	11	76893005	76901745	4	-0.991	SMALL-LOSS	FOCAL	1	MYO7A
TCGA.AA.A010.01A	11	77047120	77069896	8	-0.7361	SMALL-LOSS	FOCAL	1	PAK1
TCGA.AA.3844	11	77047514	77091573	14	-0.5723	SMALL-LOSS	FOCAL	1	PAK1
TCGA.AG.3611.01A	11	77436573	77475612	4	-0.9174	SMALL-LOSS	FOCAL	1	RSF1
TCGA.AA.A00N.01A	11	77632335	77652173	6	-1.0771	SMALL-LOSS	FOCAL	1	INTS4
TCGA.A6.3808.01A	11	77671315	77835019	23	-0.7326	SMALL-LOSS	FOCAL	6	"ALG8,INTS4,KCTD14,NDUFC2,NDUFC2-KCTD14,THRSP"
TCGA.AA.3509.01A	11	77689991	77838377	22	-0.5487	SMALL-LOSS	FOCAL	6	"ALG8,INTS4,KCTD14,NDUFC2,NDUFC2-KCTD14,THRSP"
TCGA.AG.4009.01A	11	77908931	77916846	5	-0.5397	SMALL-LOSS	FOCAL	1	USP35
TCGA.AA.A010.01A	11	77919882	78154655	16	-1.1159	SMALL-LOSS	FOCAL	3	"GAB2,NARS2,USP35"
TCGA.AA.3982	11	78190339	78190807	3	-0.6979	SMALL-LOSS	FOCAL	1	NARS2
TCGA.G4.6625	11	78633700	78642845	4	-0.7022	SMALL-LOSS	FOCAL	1	TENM4
TCGA.AA.3982	11	78833534	78853877	2	-0.8307	SMALL-LOSS	FOCAL	1	TENM4
TCGA.AA.3977	11	78853877	78857437	4	-0.9175	SMALL-LOSS	FOCAL	1	TENM4
TCGA.AA.3850	11	78853877	78857682	5	-1.08365	SMALL-LOSS	FOCAL	1	TENM4
TCGA.AA.3941	11	79227510	79870119	270	-0.7726	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	79365549	80971150	685	-0.69865	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GB	11	80251533	80533434	98	-0.6979	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GB	11	80627679	80690387	29	-0.5368	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GB	11	80761554	80928808	89	-0.6554	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	80982031	81555576	280	-0.65465	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5538	11	81259118	81375674	62	-0.5696	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6142	11	81503991	81517157	5	-0.7846	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6534	11	81503991	81517157	5	-1.1197	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	81775949	81895672	46	-1.11165	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	82082980	82092894	9	-1.06765	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	11	82105823	82359846	103	-0.6586	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	11	82872331	82879490	6	-0.6632	SMALL-LOSS	FOCAL	1	PCF11
TCGA.A6.3808.01A	11	82874672	82893396	12	-1.0791	SMALL-LOSS	FOCAL	1	PCF11
TCGA.AA.3941	11	82961123	84159544	398	-0.8009	SMALL-LOSS	FOCAL	3	"ANKRD42,CCDC90B,DLG2"
TCGA.AA.3867	11	84165324	84181438	8	-0.6411	SMALL-LOSS	FOCAL	1	DLG2
TCGA.AA.3941	11	84183434	85236331	279	-1.172	SMALL-LOSS	FOCAL	1	DLG2
TCGA.AA.3850	11	84188489	85010581	249	-0.80575	SMALL-LOSS	FOCAL	1	DLG2
TCGA.CK.5914.01A	11	85342693	85346659	3	-0.5819	SMALL-LOSS	FOCAL	1	TMEM126B
TCGA.AG.3909.01A	11	85361256	85374943	6	-1.1265	SMALL-LOSS	FOCAL	2	"CREBZF,TMEM126A"
TCGA.AA.A010.01A	11	85459263	85670000	14	-0.7195	SMALL-LOSS	FOCAL	3	"CCDC83,PICALM,SYTL2"
TCGA.AA.A00N.01A	11	85576113	85630371	11	-0.5404	SMALL-LOSS	FOCAL	1	CCDC83
TCGA.AG.3909.01A	11	85961290	85975193	6	-0.8221	SMALL-LOSS	FOCAL	1	EED
TCGA.AA.A010.01A	11	86120286	86161293	13	-0.9792	SMALL-LOSS	FOCAL	2	"CCDC81,ME3"
TCGA.AA.A010.01A	11	86518654	86662932	8	-1.2985	SMALL-LOSS	FOCAL	2	"FZD4,PRSS23"
TCGA.AG.3909.01A	11	86518654	86662932	3	-0.9842	SMALL-LOSS	FOCAL	2	"FZD4,PRSS23"
TCGA.CK.5914.01A	11	86518654	86662932	8	-1.0984	SMALL-LOSS	FOCAL	2	"FZD4,PRSS23"
TCGA.AA.3850	11	87282642	87300399	12	-0.63425	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2691	11	87873887	88871503	367	-0.5571	SMALL-LOSS	FOCAL	3	"CTSC,GRM5,RAB38"
TCGA.AA.A00N.01A	11	89444529	89537387	10	-0.6266	SMALL-LOSS	FOCAL	2	"TRIM49,TRIM77"
TCGA.DM.A28M.01A	11	89534048	89819901	12	-1.1174	SMALL-LOSS	FOCAL	7	"TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,UBTFL1"
TCGA.AG.3909.01A	11	89882147	89951227	25	-0.6657	SMALL-LOSS	FOCAL	2	"CHORDC1,NAALAD2"
TCGA.AA.A00N.01A	11	89883623	89914772	12	-1.3044	SMALL-LOSS	FOCAL	1	NAALAD2
TCGA.CK.5914.01A	11	89885419	89903184	7	-1.1704	SMALL-LOSS	FOCAL	1	NAALAD2
TCGA.CK.5914.01A	11	89906947	89951227	16	-0.56	SMALL-LOSS	FOCAL	2	"CHORDC1,NAALAD2"
TCGA.A6.6653	11	90008606	90022285	3	-0.9649	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	90494719	90572247	37	-0.63245	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	90590659	91862212	430	-0.84965	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	91966557	91998484	28	-1.12965	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	11	92342564	92354681	3	-1.1203	SMALL-LOSS	FOCAL	1	FAT3
TCGA.CK.5914.01A	11	92590333	92622939	8	-0.8506	SMALL-LOSS	FOCAL	1	FAT3
TCGA.AA.3850	11	92876765	92934332	21	-1.28085	SMALL-LOSS	FOCAL	1	SLC36A4
TCGA.A6.3808.01A	11	93104176	93553656	57	-0.9108	SMALL-LOSS	FOCAL	6	"C11orf54,CCDC67,CEP295,MED17,SMCO4,TAF1D"
TCGA.A6.5665	11	93255482	93698059	176	-0.765	SMALL-LOSS	FOCAL	6	"C11orf54,CEP295,MED17,SMCO4,TAF1D,VSTM5"
TCGA.CK.5914.01A	11	93462562	93529554	19	-0.9608	SMALL-LOSS	FOCAL	4	"C11orf54,CEP295,MED17,TAF1D"
TCGA.AG.A01L.01A	11	93471243	93534961	16	-0.5526	SMALL-LOSS	FOCAL	3	"C11orf54,MED17,TAF1D"
TCGA.AG.3909.01A	11	93483461	93523689	8	-0.9439	SMALL-LOSS	FOCAL	2	"C11orf54,MED17"
TCGA.AA.A00N.01A	11	94209413	94318560	16	-0.5782	SMALL-LOSS	FOCAL	5	"ANKRD49,C11orf97,FUT4,MRE11A,PIWIL4"
TCGA.CK.5914.01A	11	94225871	94310432	9	-1.0571	SMALL-LOSS	FOCAL	5	"ANKRD49,C11orf97,FUT4,MRE11A,PIWIL4"
TCGA.AA.3850	11	94442018	94516813	32	-1.02185	SMALL-LOSS	FOCAL	1	AMOTL1
TCGA.CK.5914.01A	11	94696513	94803564	12	-0.8316	SMALL-LOSS	FOCAL	4	"CWC15,KDM4D,KDM4E,SRSF8"
TCGA.AA.A010.01A	11	94800382	95504673	15	-0.6077	SMALL-LOSS	FOCAL	4	"ENDOD1,FAM76B,SESN3,SRSF8"
TCGA.5M.AAT5	11	94878650	94878791	3	-0.6739	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4021	11	95186028	95186912	4	-1.2259	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	95243716	95256350	19	-1.09365	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	95376447	95405134	15	-1.08885	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	95509044	95532359	11	-1.2996	SMALL-LOSS	FOCAL	2	"CEP57,FAM76B"
TCGA.CK.5914.01A	11	95516262	95521599	4	-1.0489	SMALL-LOSS	FOCAL	1	FAM76B
TCGA.AA.3850	11	95783685	95821380	17	-1.06285	SMALL-LOSS	FOCAL	1	MAML2
TCGA.AA.3850	11	96068174	100411468	1515	-0.70765	SMALL-LOSS	FOCAL	4	"CCDC82,CNTN5,JRKL,MAML2"
TCGA.CK.5914.01A	11	96086748	99715536	12	-0.6084	SMALL-LOSS	FOCAL	3	"CCDC82,CNTN5,JRKL"
TCGA.AG.A015.01A	11	96116396	99690228	5	-1.0039	SMALL-LOSS	FOCAL	3	"CCDC82,CNTN5,JRKL"
TCGA.AA.3941	11	96526275	100217434	1400	-1.1065	SMALL-LOSS	FOCAL	1	CNTN5
TCGA.EI.6508	11	99460839	99485848	14	-1.0248	SMALL-LOSS	FOCAL	1	CNTN5
TCGA.AA.3870	11	99629958	101177435	623	-0.6151	SMALL-LOSS	FOCAL	4	"ARHGAP42,CNTN5,PGR,TMEM133"
TCGA.AA.3967.01A	11	99715536	100998123	29	-0.7384	SMALL-LOSS	FOCAL	4	"ARHGAP42,CNTN5,PGR,TMEM133"
TCGA.AA.3842	11	100223835	100241912	7	-1.0397	SMALL-LOSS	FOCAL	1	CNTN5
TCGA.G4.6317	11	100223835	101027343	348	-1.2271	SMALL-LOSS	FOCAL	4	"ARHGAP42,CNTN5,PGR,TMEM133"
TCGA.AA.3941	11	100228728	100411468	53	-1.286	SMALL-LOSS	FOCAL	1	CNTN5
TCGA.AA.3941	11	100428942	101228511	354	-0.5393	SMALL-LOSS	FOCAL	3	"ARHGAP42,PGR,TMEM133"
TCGA.CK.5914.01A	11	101771159	101778494	6	-0.935	SMALL-LOSS	FOCAL	1	ANGPTL5
TCGA.CK.5914.01A	11	102195190	102319470	17	-0.5591	SMALL-LOSS	FOCAL	3	"BIRC2,BIRC3,TMEM123"
TCGA.AA.A00N.01A	11	102198725	102319470	16	-0.7449	SMALL-LOSS	FOCAL	3	"BIRC2,BIRC3,TMEM123"
TCGA.CK.4952.01A	11	102523660	102663409	56	-0.6626	SMALL-LOSS	FOCAL	4	"MMP1,MMP10,MMP27,MMP8"
TCGA.CK.5914.01A	11	102641477	102649303	7	-0.588	SMALL-LOSS	FOCAL	1	MMP10
TCGA.CK.5914.01A	11	102953461	102995782	15	-0.6451	SMALL-LOSS	FOCAL	2	"DCUN1D5,DYNC2H1"
TCGA.AG.3909.01A	11	102953461	103005003	18	-0.5309	SMALL-LOSS	FOCAL	2	"DCUN1D5,DYNC2H1"
TCGA.AA.3967.01A	11	103022848	103349774	67	-0.7728	SMALL-LOSS	FOCAL	1	DYNC2H1
TCGA.AA.3956	11	103117511	103387939	101	-0.5713	SMALL-LOSS	FOCAL	1	DYNC2H1
TCGA.AG.3611.01A	11	103870749	104034523	4	-1.186	SMALL-LOSS	FOCAL	2	"DDI1,PDGFD"
TCGA.AG.3611.01A	11	104815443	104903722	23	-0.7416	SMALL-LOSS	FOCAL	3	"CASP1,CASP4,CASP5"
TCGA.AG.3611.01A	11	105481693	106856725	35	-0.7651	SMALL-LOSS	FOCAL	5	"AASDHPPT,GRIA4,GUCY1A2,KBTBD3,MSANTD4"
TCGA.AA.A00N.01A	11	105948399	105967431	6	-1.0513	SMALL-LOSS	FOCAL	2	"AASDHPPT,KBTBD3"
TCGA.AA.3941	11	106784954	107434028	215	-0.7879	SMALL-LOSS	FOCAL	3	"ALKBH8,CWF19L2,GUCY1A2"
TCGA.AA.3982	11	107391022	107397586	4	-0.8059	SMALL-LOSS	FOCAL	1	ALKBH8
TCGA.AA.3509.01A	11	107663302	108590472	146	-0.8026	SMALL-LOSS	FOCAL	10	"ACAT1,ATM,C11orf65,CUL5,DDX10,EXPH5,KDELC2,NPAT,RAB39A,SLC35F2"
TCGA.DC.6158	11	107884389	107956076	16	-1.1666	SMALL-LOSS	FOCAL	1	CUL5
TCGA.AA.A00N.01A	11	108002591	108012318	7	-0.9674	SMALL-LOSS	FOCAL	1	ACAT1
TCGA.CK.5914.01A	11	108055904	108106385	12	-0.5792	SMALL-LOSS	FOCAL	2	"ATM,NPAT"
TCGA.CK.5914.01A	11	108128206	108139109	4	-0.5509	SMALL-LOSS	FOCAL	1	ATM
TCGA.AA.3941	11	108546576	109959637	394	-0.8581	SMALL-LOSS	FOCAL	2	"C11orf87,DDX10"
TCGA.AA.3850	11	108927555	109868835	238	-0.59805	SMALL-LOSS	FOCAL	1	C11orf87
TCGA.AA.3867	11	109860813	109863200	5	-0.8606	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	110518427	110639772	45	-0.72445	SMALL-LOSS	FOCAL	1	ARHGAP20
TCGA.AA.A00N.01A	11	110582803	111491018	35	-0.7676	SMALL-LOSS	FOCAL	9	"ARHGAP20,BTG4,C11orf53,C11orf88,COLCA1,COLCA2,LAYN,POU2AF1,SIK2"
TCGA.AY.A71X	11	110672016	111055511	184	-0.7859	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	11	110997399	111032892	14	-0.7699	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	11	111249798	111414601	14	-0.8128	SMALL-LOSS	FOCAL	4	"BTG4,C11orf88,LAYN,POU2AF1"
TCGA.AG.4009.01A	11	111384105	111425261	10	-0.8453	SMALL-LOSS	FOCAL	2	"C11orf88,LAYN"
TCGA.CK.5914.01A	11	111384105	111491018	16	-0.8062	SMALL-LOSS	FOCAL	3	"C11orf88,LAYN,SIK2"
TCGA.CK.5914.01A	11	111591155	111635964	20	-0.6597	SMALL-LOSS	FOCAL	2	"PPP2R1B,SIK2"
TCGA.AA.A00N.01A	11	111612242	111635964	14	-0.9627	SMALL-LOSS	FOCAL	1	PPP2R1B
TCGA.AG.3909.01A	11	111625162	111635964	7	-0.5692	SMALL-LOSS	FOCAL	1	PPP2R1B
TCGA.AG.3909.01A	11	111728277	111915807	52	-0.6335	SMALL-LOSS	FOCAL	8	"ALG9,C11orf1,C11orf52,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2"
TCGA.AA.A00N.01A	11	111728277	111921944	55	-0.9431	SMALL-LOSS	FOCAL	8	"ALG9,C11orf1,C11orf52,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2"
TCGA.AG.3891.01A	11	111782216	111789624	4	-0.5452	SMALL-LOSS	FOCAL	3	"C11orf52,CRYAB,HSPB2"
TCGA.AA.A010.01A	11	112065325	112832272	19	-0.7371	SMALL-LOSS	FOCAL	4	"BCO2,NCAM1,PLET1,PTS"
TCGA.AG.3909.01A	11	112070374	112104153	12	-1.1526	SMALL-LOSS	FOCAL	2	"BCO2,PTS"
TCGA.AA.3819	11	112312404	112344416	11	-0.5285	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	11	112788482	112800252	6	-0.8603	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	11	112837268	112869053	21	-0.7423	SMALL-LOSS	FOCAL	1	NCAM1
TCGA.AA.3977	11	112838511	112846802	10	-0.6998	SMALL-LOSS	FOCAL	1	NCAM1
TCGA.AA.A00N.01A	11	113186912	113209984	9	-1.2186	SMALL-LOSS	FOCAL	1	TTC12
TCGA.AA.A00N.01A	11	113254023	113267919	7	-0.5488	SMALL-LOSS	FOCAL	1	ANKK1
TCGA.AA.A00N.01A	11	113628347	113675358	13	-0.9272	SMALL-LOSS	FOCAL	3	"CLDN25,USP28,ZW10"
TCGA.AA.A00N.01A	11	113724920	113803618	7	-1.1342	SMALL-LOSS	FOCAL	2	"HTR3B,USP28"
TCGA.AA.A00D.01A	11	113802440	113860136	14	-0.524	SMALL-LOSS	FOCAL	2	"HTR3A,HTR3B"
TCGA.CK.5914.01A	11	114272389	114320521	11	-0.9342	SMALL-LOSS	FOCAL	2	"RBM7,REXO2"
TCGA.AG.3909.01A	11	114311367	114320521	6	-0.9646	SMALL-LOSS	FOCAL	1	REXO2
TCGA.AA.3850	11	115085585	115093437	6	-0.83615	SMALL-LOSS	FOCAL	1	CADM1
TCGA.AA.3850	11	115173264	115329538	39	-0.63605	SMALL-LOSS	FOCAL	1	CADM1
TCGA.AM.5820	11	115475194	115477033	5	-0.7598	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	11	115848895	115897834	13	-0.62025	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3544	11	116119743	116979910	381	-0.6815	SMALL-LOSS	FOCAL	7	"APOA1,APOA4,APOA5,APOC3,BUD13,SIK3,ZPR1"
TCGA.AA.3982	11	116158778	116172574	4	-0.6638	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	11	116627806	116643497	9	-0.8694	SMALL-LOSS	FOCAL	1	BUD13
TCGA.CK.5914.01A	11	116646367	116658146	14	-1.2182	SMALL-LOSS	FOCAL	1	ZPR1
TCGA.AF.3914.01A	11	116649611	116658146	13	-0.8869	SMALL-LOSS	FOCAL	1	ZPR1
TCGA.AA.A01Q.01A	11	116650433	116657640	11	-0.5258	SMALL-LOSS	FOCAL	1	ZPR1
TCGA.AG.3909.01A	11	116658146	116707690	10	-0.7108	SMALL-LOSS	FOCAL	5	"APOA1,APOA4,APOA5,APOC3,ZPR1"
TCGA.AA.A00N.01A	11	116658498	116718145	13	-0.6295	SMALL-LOSS	FOCAL	6	"APOA1,APOA4,APOA5,APOC3,SIK3,ZPR1"
TCGA.AA.A00D.01A	11	116740980	116747590	7	-0.5709	SMALL-LOSS	FOCAL	1	SIK3
TCGA.AG.3909.01A	11	117023116	117117488	46	-0.6229	SMALL-LOSS	FOCAL	5	"PAFAH1B2,PCSK7,RNF214,SIDT2,TAGLN"
TCGA.AA.A00N.01A	11	117038110	117100111	38	-0.5655	SMALL-LOSS	FOCAL	4	"PAFAH1B2,PCSK7,SIDT2,TAGLN"
TCGA.AA.A01Q.01A	11	117061307	117074884	11	-0.5903	SMALL-LOSS	FOCAL	2	"SIDT2,TAGLN"
TCGA.AG.4009.01A	11	117090295	117117488	13	-0.712	SMALL-LOSS	FOCAL	2	"PCSK7,RNF214"
TCGA.CK.5914.01A	11	117104940	117152005	7	-1.0033	SMALL-LOSS	FOCAL	1	RNF214
TCGA.AZ.4684.01A	11	117110450	117152005	5	-0.7908	SMALL-LOSS	FOCAL	1	RNF214
TCGA.DM.A28E	11	117120472	117649674	227	-0.9827	SMALL-LOSS	FOCAL	4	"BACE1,CEP164,DSCAML1,RNF214"
TCGA.AF.3914.01A	11	117301401	117303824	4	-1.0196	SMALL-LOSS	FOCAL	1	DSCAML1
TCGA.AA.3522	11	117571474	117584760	5	-0.8162	SMALL-LOSS	FOCAL	1	DSCAML1
TCGA.AA.3544	11	117571474	117584760	5	-1.2205	SMALL-LOSS	FOCAL	1	DSCAML1
TCGA.AA.3982	11	117757684	117769429	3	-1.2453	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	11	118011875	118023272	4	-0.7104	SMALL-LOSS	FOCAL	1	SCN4B
TCGA.AA.A010.01A	11	118175595	118186163	8	-0.7901	SMALL-LOSS	FOCAL	1	CD3E
TCGA.AF.3914.01A	11	118209808	118213194	5	-1.0202	SMALL-LOSS	FOCAL	1	CD3D
TCGA.AA.A010.01A	11	118215097	118223055	6	-0.8241	SMALL-LOSS	FOCAL	1	CD3G
TCGA.CK.5914.01A	11	118353072	118369077	15	-0.7715	SMALL-LOSS	FOCAL	1	KMT2A
TCGA.AA.A00N.01A	11	118368599	118509561	55	-0.5721	SMALL-LOSS	FOCAL	6	"ARCN1,IFT46,KMT2A,PHLDB1,TMEM25,TTC36"
TCGA.AG.3909.01A	11	118391974	118404506	8	-0.5964	SMALL-LOSS	FOCAL	3	"KMT2A,TMEM25,TTC36"
TCGA.AG.3909.01A	11	118451939	118512944	19	-0.6293	SMALL-LOSS	FOCAL	2	"ARCN1,PHLDB1"
TCGA.DT.5265	11	118574674	118575418	3	-1.1193	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	11	118769082	118780549	8	-0.8837	SMALL-LOSS	FOCAL	1	BCL9L
TCGA.AA.A00Q.01A	11	118770694	118827007	7	-0.7909	SMALL-LOSS	FOCAL	2	"BCL9L,UPK2"
TCGA.AG.3909.01A	11	118849452	118895573	22	-1.0659	SMALL-LOSS	FOCAL	5	"CCDC84,FOXR1,RPS25,SLC37A4,TRAPPC4"
TCGA.A6.3808.01A	11	118888627	118986728	70	-0.54	SMALL-LOSS	FOCAL	9	"C2CD2L,DPAGT1,H2AFX,HMBS,HYOU1,RPS25,SLC37A4,TRAPPC4,VPS11"
TCGA.AA.A010.01A	11	118947570	118951762	5	-1.2814	SMALL-LOSS	FOCAL	1	VPS11
TCGA.AA.A01Q.01A	11	118958890	118971358	15	-0.9189	SMALL-LOSS	FOCAL	3	"DPAGT1,H2AFX,HMBS"
TCGA.AG.3909.01A	11	118958890	118984281	23	-1.0674	SMALL-LOSS	FOCAL	4	"C2CD2L,DPAGT1,H2AFX,HMBS"
TCGA.AA.A00N.01A	11	118982970	119042999	24	-0.5225	SMALL-LOSS	FOCAL	4	"ABCG4,C2CD2L,HINFP,NLRX1"
TCGA.AA.A01Q.01A	11	119020626	119042999	13	-0.7572	SMALL-LOSS	FOCAL	2	"ABCG4,NLRX1"
TCGA.AG.3909.01A	11	119020626	119050365	17	-0.7557	SMALL-LOSS	FOCAL	2	"ABCG4,NLRX1"
TCGA.AA.A00N.01A	11	119158508	119227848	28	-0.6727	SMALL-LOSS	FOCAL	6	"C1QTNF5,CBL,MCAM,MFRP,RNF26,USP2"
TCGA.CK.5914.01A	11	119180514	119227848	22	-0.5338	SMALL-LOSS	FOCAL	5	"C1QTNF5,MCAM,MFRP,RNF26,USP2"
TCGA.A6.3808.01A	11	119181446	119290076	30	-1.2145	SMALL-LOSS	FOCAL	6	"C1QTNF5,MCAM,MFRP,RNF26,THY1,USP2"
TCGA.AA.A010.01A	11	119187682	119230820	21	-1.0675	SMALL-LOSS	FOCAL	5	"C1QTNF5,MCAM,MFRP,RNF26,USP2"
TCGA.AG.3909.01A	11	119228162	119545821	16	-0.5733	SMALL-LOSS	FOCAL	3	"PVRL1,THY1,USP2"
TCGA.A6.6653	11	119346197	119408019	25	-0.8029	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	11	119535410	120139860	23	-0.5245	SMALL-LOSS	FOCAL	4	"OAF,POU2F3,PVRL1,TRIM29"
TCGA.AA.A010.01A	11	120096341	120117106	5	-1.1535	SMALL-LOSS	FOCAL	2	"OAF,POU2F3"
TCGA.AG.3909.01A	11	120186003	120207869	7	-0.8068	SMALL-LOSS	FOCAL	3	"ARHGEF12,POU2F3,TMEM136"
TCGA.CK.5914.01A	11	120188994	120207869	5	-0.9617	SMALL-LOSS	FOCAL	3	"ARHGEF12,POU2F3,TMEM136"
TCGA.AA.3982	11	120239186	120257494	4	-0.6143	SMALL-LOSS	FOCAL	1	ARHGEF12
TCGA.AA.A010.01A	11	120350622	120355680	4	-1.2371	SMALL-LOSS	FOCAL	1	ARHGEF12
TCGA.AG.A01W.01A	11	120494189	120533712	8	-0.8488	SMALL-LOSS	FOCAL	1	GRIK4
TCGA.AA.A00N.01A	11	120852778	120918243	4	-0.7261	SMALL-LOSS	FOCAL	2	"GRIK4,TBCEL"
TCGA.AG.A015.01A	11	120979891	121016222	9	-0.8749	SMALL-LOSS	FOCAL	1	TECTA
TCGA.AA.A02F.01A	11	121481728	122929788	55	-0.8618	SMALL-LOSS	FOCAL	7	"BLID,BSX,C11orf63,CRTAM,HSPA8,SORL1,UBASH3B"
TCGA.AG.3611.01A	11	121483392	121500160	9	-0.9717	SMALL-LOSS	FOCAL	1	SORL1
TCGA.AA.3850	11	121842525	121986403	39	-0.66005	SMALL-LOSS	FOCAL	1	BLID
TCGA.AA.3850	11	122317945	122328328	8	-0.74505	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6459	11	122607845	122624668	21	-0.7232	SMALL-LOSS	FOCAL	1	UBASH3B
TCGA.CK.5914.01A	11	122852079	122931831	10	-0.9297	SMALL-LOSS	FOCAL	2	"BSX,HSPA8"
TCGA.AA.3850	11	123768312	123774724	7	-1.28985	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	11	123777202	123900308	7	-0.5207	SMALL-LOSS	FOCAL	6	"OR10G4,OR10G9,OR10S1,OR4D5,OR6T1,OR8D4"
TCGA.AG.A00C.01A	11	123810373	123989634	10	-0.6321	SMALL-LOSS	FOCAL	8	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6T1,VWA5A"
TCGA.AA.3850	11	124087307	124283162	114	-0.72705	SMALL-LOSS	FOCAL	7	"OR8B2,OR8B3,OR8D1,OR8D2,OR8G1,OR8G2,OR8G5"
TCGA.AA.3866	11	124095915	124115000	7	-0.8354	SMALL-LOSS	FOCAL	1	OR8G2
TCGA.AA.A00N.01A	11	124545133	124747781	42	-0.9911	SMALL-LOSS	FOCAL	7	"ESAM,MSANTD2,NRGN,ROBO3,SIAE,SPA17,VSIG2"
TCGA.AG.3909.01A	11	124545133	124751043	45	-0.7341	SMALL-LOSS	FOCAL	7	"ESAM,MSANTD2,NRGN,ROBO3,SIAE,SPA17,VSIG2"
TCGA.AF.3914.01A	11	124564150	124637053	16	-0.8583	SMALL-LOSS	FOCAL	5	"ESAM,MSANTD2,NRGN,SPA17,VSIG2"
TCGA.AG.4009.01A	11	124617404	124642822	13	-1.0416	SMALL-LOSS	FOCAL	3	"ESAM,MSANTD2,VSIG2"
TCGA.AG.A01L.01A	11	124744633	124750283	11	-0.5378	SMALL-LOSS	FOCAL	1	ROBO3
TCGA.CK.5914.01A	11	124789666	124793221	5	-0.9754	SMALL-LOSS	FOCAL	2	"HEPACAM,HEPN1"
TCGA.AA.A00N.01A	11	124789666	124794575	7	-1.2958	SMALL-LOSS	FOCAL	2	"HEPACAM,HEPN1"
TCGA.AF.3914.01A	11	124789666	124805763	8	-1.1017	SMALL-LOSS	FOCAL	2	"HEPACAM,HEPN1"
TCGA.AG.4009.01A	11	124789666	124805763	8	-0.8046	SMALL-LOSS	FOCAL	2	"HEPACAM,HEPN1"
TCGA.AA.A00L.01A	11	124792230	124794575	5	-0.6933	SMALL-LOSS	FOCAL	1	HEPACAM
TCGA.AG.3611.01A	11	124793221	124967461	20	-0.9628	SMALL-LOSS	FOCAL	4	"CCDC15,HEPACAM,SLC37A2,TMEM218"
TCGA.AA.3941	11	124890395	124923106	8	-1.135	SMALL-LOSS	FOCAL	1	CCDC15
TCGA.AA.A00N.01A	11	124908310	124971986	21	-0.865	SMALL-LOSS	FOCAL	3	"CCDC15,SLC37A2,TMEM218"
TCGA.AG.3909.01A	11	124952088	124971986	9	-0.8642	SMALL-LOSS	FOCAL	2	"SLC37A2,TMEM218"
TCGA.CK.5914.01A	11	124955786	124971049	4	-1.2586	SMALL-LOSS	FOCAL	2	"SLC37A2,TMEM218"
TCGA.AG.3909.01A	11	125351378	125452227	11	-0.7439	SMALL-LOSS	FOCAL	3	"EI24,FEZ1,LOC403312"
TCGA.AA.A010.01A	11	125351378	125474001	19	-0.7981	SMALL-LOSS	FOCAL	4	"EI24,FEZ1,LOC403312,STT3A"
TCGA.CK.5914.01A	11	125366367	125447337	5	-0.9975	SMALL-LOSS	FOCAL	2	"EI24,LOC403312"
TCGA.CK.5914.01A	11	125447997	125481268	16	-0.6377	SMALL-LOSS	FOCAL	2	"EI24,STT3A"
TCGA.CK.5914.01A	11	125482437	125513674	13	-1.03	SMALL-LOSS	FOCAL	2	"CHEK1,STT3A"
TCGA.AA.3941	11	125592122	125698653	34	-0.8441	SMALL-LOSS	FOCAL	3	"PATE1,PATE2,PATE3"
TCGA.AA.A010.01A	11	125616164	125618478	5	-0.78	SMALL-LOSS	FOCAL	1	PATE1
TCGA.AG.A01W.01A	11	125636464	125648402	15	-0.7512	SMALL-LOSS	FOCAL	1	PATE2
TCGA.AG.4009.01A	11	125763643	125781198	7	-0.7188	SMALL-LOSS	FOCAL	3	"DDX25,HYLS1,PUS3"
TCGA.AA.A00N.01A	11	125786870	125848142	7	-0.5454	SMALL-LOSS	FOCAL	2	"CDON,DDX25"
TCGA.AA.A00N.01A	11	126126454	126176413	27	-1.1083	SMALL-LOSS	FOCAL	5	"DCPS,FAM118B,FOXRED1,SRPR,TIRAP"
TCGA.AG.A015.01A	11	126131262	126146929	20	-0.9238	SMALL-LOSS	FOCAL	3	"FAM118B,FOXRED1,SRPR"
TCGA.CK.5914.01A	11	126131921	126208134	27	-0.7873	SMALL-LOSS	FOCAL	5	"DCPS,FAM118B,FOXRED1,SRPR,TIRAP"
TCGA.AG.A01L.01A	11	126137447	126144773	8	-0.8951	SMALL-LOSS	FOCAL	2	"FOXRED1,SRPR"
TCGA.AA.3941	11	126695832	126710566	12	-0.9041	SMALL-LOSS	FOCAL	1	KIRREL3
TCGA.AA.3941	11	126788033	128144863	532	-0.6928	SMALL-LOSS	FOCAL	1	KIRREL3
TCGA.AA.3858	11	126884353	126885453	3	-0.7891	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	11	128930044	128989743	16	-0.5896	SMALL-LOSS	FOCAL	1	ARHGAP32
TCGA.AA.3941	11	128931432	128994349	18	-1.1852	SMALL-LOSS	FOCAL	1	ARHGAP32
TCGA.AA.A010.01A	11	129830729	130013214	19	-0.68	SMALL-LOSS	FOCAL	2	"APLP2,PRDM10"
TCGA.AG.3909.01A	11	130066197	130069829	4	-1.1778	SMALL-LOSS	FOCAL	1	ST14
TCGA.AA.A010.01A	11	130275451	130297424	8	-1.2082	SMALL-LOSS	FOCAL	1	ADAMTS8
TCGA.AA.3558	11	131180632	133439341	1064	-1.1331	SMALL-LOSS	FOCAL	2	"NTM,OPCML"
TCGA.AA.3850	11	131688396	131718313	21	-0.75245	SMALL-LOSS	FOCAL	1	NTM
TCGA.AA.3867	11	132390290	132397239	7	-0.6167	SMALL-LOSS	FOCAL	1	OPCML
TCGA.A6.5665	11	133548337	134944769	579	-0.6441	SMALL-LOSS	FOCAL	10	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,SPATA19,THYN1,VPS26B"
TCGA.AG.3575	11	133686116	133686341	3	-0.8325	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	11	133711888	133805461	17	-0.702	SMALL-LOSS	FOCAL	2	"IGSF9B,SPATA19"
TCGA.AA.A00N.01A	11	133711888	134018395	30	-0.7015	SMALL-LOSS	FOCAL	3	"IGSF9B,JAM3,SPATA19"
TCGA.CK.5914.01A	11	133711888	134046143	41	-0.5337	SMALL-LOSS	FOCAL	4	"IGSF9B,JAM3,NCAPD3,SPATA19"
TCGA.AA.A010.01A	11	134063864	134112961	16	-1.1216	SMALL-LOSS	FOCAL	2	"NCAPD3,VPS26B"
TCGA.AA.A00N.01A	11	134074744	134176969	40	-1.2403	SMALL-LOSS	FOCAL	5	"ACAD8,GLB1L3,NCAPD3,THYN1,VPS26B"
TCGA.CK.5914.01A	11	134078715	134257391	70	-0.7158	SMALL-LOSS	FOCAL	7	"ACAD8,B3GAT1,GLB1L2,GLB1L3,NCAPD3,THYN1,VPS26B"
TCGA.AG.3909.01A	11	134086792	134115307	8	-0.9959	SMALL-LOSS	FOCAL	2	"NCAPD3,VPS26B"
TCGA.AA.A01Q.01A	11	134118268	134129455	13	-0.7976	SMALL-LOSS	FOCAL	2	"ACAD8,THYN1"
TCGA.AG.3909.01A	11	134122674	134162975	18	-0.9714	SMALL-LOSS	FOCAL	3	"ACAD8,GLB1L3,THYN1"
TCGA.AA.A010.01A	11	134174962	134201900	12	-0.9848	SMALL-LOSS	FOCAL	2	"GLB1L2,GLB1L3"
TCGA.AG.A015.01A	11	134179482	134188537	7	-0.7485	SMALL-LOSS	FOCAL	1	GLB1L3
TCGA.AG.3909.01A	11	134183800	134257391	24	-0.9006	SMALL-LOSS	FOCAL	3	"B3GAT1,GLB1L2,GLB1L3"
TCGA.AA.A00N.01A	11	134188537	134257391	24	-0.9431	SMALL-LOSS	FOCAL	3	"B3GAT1,GLB1L2,GLB1L3"
TCGA.AA.A01Q.01A	11	134214229	134257391	21	-0.986	SMALL-LOSS	FOCAL	2	"B3GAT1,GLB1L2"
TCGA.AA.A010.01A	11	134228898	134257391	17	-0.9174	SMALL-LOSS	FOCAL	2	"B3GAT1,GLB1L2"
TCGA.AA.A01F.01A	11	134253553	134257391	2	-0.5937	SMALL-LOSS	FOCAL	1	B3GAT1
TCGA.AG.3575	11	134299863	134300266	3	-0.7647	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5667	11	134602945	134607870	3	-1.3006	SMALL-LOSS	FOCAL	0	None
TCGA.AY.4070	11	134932564	134944769	7	-0.6163	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A026	12	192219	796130	219	-0.7043	SMALL-LOSS	FOCAL	7	"B4GALNT3,CCDC77,IQSEC3,KDM5A,NINJ2,SLC6A12,SLC6A13"
TCGA.AG.4015	12	192219	865969	230	-1.2696	SMALL-LOSS	FOCAL	8	"B4GALNT3,CCDC77,IQSEC3,KDM5A,NINJ2,SLC6A12,SLC6A13,WNK1"
TCGA.AA.3952	12	192219	908282	238	-0.627	SMALL-LOSS	FOCAL	8	"B4GALNT3,CCDC77,IQSEC3,KDM5A,NINJ2,SLC6A12,SLC6A13,WNK1"
TCGA.AA.A010.01A	12	247392	278126	9	-0.9634	SMALL-LOSS	FOCAL	1	IQSEC3
TCGA.AG.3909.01A	12	247392	313688	20	-0.5466	SMALL-LOSS	FOCAL	2	"IQSEC3,SLC6A12"
TCGA.AA.A00N.01A	12	247392	318892	24	-0.878	SMALL-LOSS	FOCAL	2	"IQSEC3,SLC6A12"
TCGA.AF.3914.01A	12	247392	318892	23	-0.8393	SMALL-LOSS	FOCAL	2	"IQSEC3,SLC6A12"
TCGA.CK.5914.01A	12	247392	333141	29	-0.6502	SMALL-LOSS	FOCAL	3	"IQSEC3,SLC6A12,SLC6A13"
TCGA.AA.A01Q.01A	12	247392	333526	30	-0.6915	SMALL-LOSS	FOCAL	3	"IQSEC3,SLC6A12,SLC6A13"
TCGA.AG.4009.01A	12	301607	330085	13	-0.8791	SMALL-LOSS	FOCAL	2	"SLC6A12,SLC6A13"
TCGA.AA.A00N.01A	12	493146	674373	33	-0.7221	SMALL-LOSS	FOCAL	4	"B4GALNT3,CCDC77,KDM5A,NINJ2"
TCGA.AG.3891.01A	12	653456	660038	6	-0.6481	SMALL-LOSS	FOCAL	1	B4GALNT3
TCGA.AG.4015	12	883177	2880321	658	-1.2089	SMALL-LOSS	FOCAL	10	"ADIPOR2,CACNA1C,CACNA2D4,DCP1B,ERC1,FBXL14,LRTM2,RAD52,WNK1,WNT5B"
TCGA.AA.A00N.01A	12	1022491	1023560	3	-0.6808	SMALL-LOSS	FOCAL	1	RAD52
TCGA.AA.3952	12	1259830	2056362	238	-0.5732	SMALL-LOSS	FOCAL	7	"ADIPOR2,CACNA2D4,DCP1B,ERC1,FBXL14,LRTM2,WNT5B"
TCGA.AA.A010.01A	12	1599210	1895063	14	-0.8039	SMALL-LOSS	FOCAL	4	"ADIPOR2,ERC1,FBXL14,WNT5B"
TCGA.AA.3530	12	1889281	1890588	4	-1.0388	SMALL-LOSS	FOCAL	1	ADIPOR2
TCGA.AA.3967.01A	12	1904780	2023962	33	-0.5234	SMALL-LOSS	FOCAL	2	"CACNA2D4,LRTM2"
TCGA.AG.A01W.01A	12	2581245	2591294	8	-0.9842	SMALL-LOSS	FOCAL	1	CACNA1C
TCGA.AG.3909.01A	12	2742740	2774698	8	-0.8523	SMALL-LOSS	FOCAL	1	CACNA1C
TCGA.AA.3967.01A	12	2775801	2791104	8	-0.8598	SMALL-LOSS	FOCAL	1	CACNA1C
TCGA.AG.A01W.01A	12	2779770	2803149	11	-0.6617	SMALL-LOSS	FOCAL	1	CACNA1C
TCGA.AG.A01W.01A	12	2806584	2844707	12	-1.0564	SMALL-LOSS	FOCAL	1	CACNA1C
TCGA.AA.A01Q.01A	12	2904274	2909539	7	-0.6971	SMALL-LOSS	FOCAL	1	FKBP4
TCGA.AG.4009.01A	12	2906265	2910245	7	-1.2273	SMALL-LOSS	FOCAL	1	FKBP4
TCGA.AA.A01F.01A	12	2921878	2936322	10	-0.663	SMALL-LOSS	FOCAL	2	"ITFG2,NRIP2"
TCGA.AG.4009.01A	12	2967822	2994521	10	-0.5465	SMALL-LOSS	FOCAL	2	"FOXM1,RHNO1"
TCGA.AA.A029.01A	12	2970414	3042556	15	-1.2922	SMALL-LOSS	FOCAL	3	"FOXM1,RHNO1,TULP3"
TCGA.AA.A010.01A	12	3039367	3049644	8	-1.0449	SMALL-LOSS	FOCAL	1	TULP3
TCGA.AG.3909.01A	12	3120106	3388095	12	-0.7588	SMALL-LOSS	FOCAL	2	"TEAD4,TSPAN9"
TCGA.AA.A01Q.01A	12	3120106	3726061	28	-0.6058	SMALL-LOSS	FOCAL	4	"CRACR2A,PRMT8,TEAD4,TSPAN9"
TCGA.AG.4009.01A	12	3921282	4387876	9	-0.5734	SMALL-LOSS	FOCAL	2	"CCND2,PARP11"
TCGA.AA.A010.01A	12	3921282	4446155	14	-0.9432	SMALL-LOSS	FOCAL	3	"CCND2,PARP11,TIGAR"
TCGA.AA.A02Y	12	4563152	4564191	3	-0.9603	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3891.01A	12	4626190	5541413	61	-0.5601	SMALL-LOSS	FOCAL	10	"AKAP3,C12orf4,DYRK4,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,RAD51AP1"
TCGA.AG.4015	12	4757473	6202607	834	-0.7628	SMALL-LOSS	FOCAL	9	"AKAP3,ANO2,GALNT8,KCNA1,KCNA5,KCNA6,NDUFA9,NTF3,VWF"
TCGA.AG.3909.01A	12	4791317	4796087	3	-0.7334	SMALL-LOSS	FOCAL	1	NDUFA9
TCGA.AG.3909.01A	12	4919171	5153265	7	-0.7102	SMALL-LOSS	FOCAL	3	"KCNA1,KCNA5,KCNA6"
TCGA.AA.A00N.01A	12	4919171	5541413	8	-1.2188	SMALL-LOSS	FOCAL	4	"KCNA1,KCNA5,KCNA6,NTF3"
TCGA.AG.4009.01A	12	4919171	5541413	8	-0.6074	SMALL-LOSS	FOCAL	4	"KCNA1,KCNA5,KCNA6,NTF3"
TCGA.CK.5914.01A	12	4920291	5153265	6	-1.0487	SMALL-LOSS	FOCAL	3	"KCNA1,KCNA5,KCNA6"
TCGA.AA.3811	12	5210760	5243538	23	-0.7715	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3530	12	5211462	5243538	22	-0.5286	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	12	5213570	5215968	5	-0.9319	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5820	12	5418537	5597380	100	-0.5457	SMALL-LOSS	FOCAL	1	NTF3
TCGA.AA.A00N.01A	12	6055224	6062612	6	-1.2196	SMALL-LOSS	FOCAL	2	"ANO2,VWF"
TCGA.AG.3909.01A	12	6055224	6062612	6	-0.6235	SMALL-LOSS	FOCAL	2	"ANO2,VWF"
TCGA.AG.4009.01A	12	6055224	6062612	6	-0.5888	SMALL-LOSS	FOCAL	2	"ANO2,VWF"
TCGA.CK.5914.01A	12	6055224	6062612	6	-0.7427	SMALL-LOSS	FOCAL	2	"ANO2,VWF"
TCGA.AG.4015	12	6208617	6394677	50	-1.2139	SMALL-LOSS	FOCAL	2	"CD9,VWF"
TCGA.AA.A01Q.01A	12	6346883	6483507	31	-0.7844	SMALL-LOSS	FOCAL	4	"CD9,PLEKHG6,SCNN1A,TNFRSF1A"
TCGA.AA.A00N.01A	12	6346883	6499808	41	-0.6901	SMALL-LOSS	FOCAL	5	"CD9,LTBR,PLEKHG6,SCNN1A,TNFRSF1A"
TCGA.AG.4009.01A	12	6421351	6443226	17	-1.2391	SMALL-LOSS	FOCAL	2	"PLEKHG6,TNFRSF1A"
TCGA.CK.5914.01A	12	6422265	6499808	39	-0.5565	SMALL-LOSS	FOCAL	4	"LTBR,PLEKHG6,SCNN1A,TNFRSF1A"
TCGA.AG.3909.01A	12	6450873	6499808	18	-0.679	SMALL-LOSS	FOCAL	3	"LTBR,SCNN1A,TNFRSF1A"
TCGA.AG.A01W.01A	12	6542465	6545900	3	-0.6325	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	12	6547227	6560451	7	-0.9812	SMALL-LOSS	FOCAL	1	CD27
TCGA.AG.A01W.01A	12	6561030	6677380	56	-0.5159	SMALL-LOSS	FOCAL	7	"GAPDH,IFFO1,MRPL51,NCAPD2,NOP2,TAPBPL,VAMP1"
TCGA.CK.5914.01A	12	6571158	6604217	10	-0.7462	SMALL-LOSS	FOCAL	4	"MRPL51,NCAPD2,TAPBPL,VAMP1"
TCGA.AA.A01Q.01A	12	6639840	6669253	16	-0.9929	SMALL-LOSS	FOCAL	4	"GAPDH,IFFO1,NCAPD2,NOP2"
TCGA.AG.3909.01A	12	6657181	6669253	9	-1.2277	SMALL-LOSS	FOCAL	2	"IFFO1,NOP2"
TCGA.AG.4009.01A	12	6657181	6679754	15	-0.8133	SMALL-LOSS	FOCAL	3	"CHD4,IFFO1,NOP2"
TCGA.AA.A010.01A	12	6666107	6679754	8	-1.2069	SMALL-LOSS	FOCAL	2	"CHD4,NOP2"
TCGA.AG.A01W.01A	12	6704035	6710401	6	-1.1931	SMALL-LOSS	FOCAL	1	CHD4
TCGA.AG.3909.01A	12	6705138	6729244	11	-0.5912	SMALL-LOSS	FOCAL	2	"CHD4,LPAR5"
TCGA.AG.3909.01A	12	6730085	6788553	25	-1.0033	SMALL-LOSS	FOCAL	4	"ACRBP,ING4,LPAR5,ZNF384"
TCGA.AG.A01W.01A	12	6757167	6804864	12	-1.1677	SMALL-LOSS	FOCAL	3	"ING4,PIANP,ZNF384"
TCGA.AG.4009.01A	12	6804112	6807118	5	-0.5747	SMALL-LOSS	FOCAL	1	PIANP
TCGA.AG.A01W.01A	12	6828430	6839529	12	-1.1581	SMALL-LOSS	FOCAL	1	COPS7A
TCGA.AG.A01W.01A	12	6840328	6843206	5	-0.6202	SMALL-LOSS	FOCAL	1	COPS7A
TCGA.AA.A01Q.01A	12	6858962	6887362	18	-0.7326	SMALL-LOSS	FOCAL	3	"LAG3,MLF2,PTMS"
TCGA.AG.4009.01A	12	6878708	6886915	9	-1.0809	SMALL-LOSS	FOCAL	2	"LAG3,PTMS"
TCGA.AF.3914.01A	12	6884402	6934602	14	-0.5176	SMALL-LOSS	FOCAL	3	"CD4,GPR162,LAG3"
TCGA.AG.A01W.01A	12	6923471	6930865	5	-0.988	SMALL-LOSS	FOCAL	1	CD4
TCGA.AF.3914.01A	12	6935324	6940937	6	-1.2124	SMALL-LOSS	FOCAL	2	"GPR162,P3H3"
TCGA.AA.A00N.01A	12	6948430	7053249	57	-0.9647	SMALL-LOSS	FOCAL	10	"ATN1,C12orf57,CDCA3,ENO2,GNB3,LRRC23,P3H3,SPSB2,TPI1,USP5"
TCGA.AA.A01Q.01A	12	6952087	7026140	39	-0.5214	SMALL-LOSS	FOCAL	7	"CDCA3,ENO2,GNB3,LRRC23,SPSB2,TPI1,USP5"
TCGA.AA.A010.01A	12	6959950	6981221	24	-0.5554	SMALL-LOSS	FOCAL	4	"CDCA3,SPSB2,TPI1,USP5"
TCGA.AG.4009.01A	12	7025567	7050495	16	-0.5978	SMALL-LOSS	FOCAL	2	"ATN1,ENO2"
TCGA.AA.A01Q.01A	12	7026725	7043091	7	-1.1479	SMALL-LOSS	FOCAL	2	"ATN1,ENO2"
TCGA.AA.A010.01A	12	7045708	7064813	14	-1.1572	SMALL-LOSS	FOCAL	3	"ATN1,C12orf57,PTPN6"
TCGA.AA.A00N.01A	12	7073221	7092541	21	-1.0371	SMALL-LOSS	FOCAL	3	"EMG1,LPCAT3,PHB2"
TCGA.AG.A01W.01A	12	7143362	7181771	16	-0.9386	SMALL-LOSS	FOCAL	1	C1S
TCGA.AG.A00C.01A	12	7187799	7276647	12	-0.625	SMALL-LOSS	FOCAL	3	"C1R,C1RL,RBP5"
TCGA.AG.A01W.01A	12	7192819	7201756	6	-0.542	SMALL-LOSS	FOCAL	1	C1R
TCGA.AA.A01F.01A	12	7252230	7295433	19	-0.7066	SMALL-LOSS	FOCAL	3	"C1RL,CLSTN3,RBP5"
TCGA.AG.A01W.01A	12	7253496	7354436	5	-0.5852	SMALL-LOSS	FOCAL	4	"C1RL,CLSTN3,PEX5,RBP5"
TCGA.AG.A00C.01A	12	7301578	7310529	6	-0.5517	SMALL-LOSS	FOCAL	1	CLSTN3
TCGA.AA.A02E.01A	12	7342952	7360544	11	-0.8264	SMALL-LOSS	FOCAL	1	PEX5
TCGA.AA.A00N.01A	12	7342952	7361571	13	-1.207	SMALL-LOSS	FOCAL	1	PEX5
TCGA.AG.4009.01A	12	7342952	7362597	15	-1.0875	SMALL-LOSS	FOCAL	1	PEX5
TCGA.CK.5914.01A	12	7343402	7355977	8	-0.8769	SMALL-LOSS	FOCAL	1	PEX5
TCGA.AA.A010.01A	12	7343402	7362597	14	-1.205	SMALL-LOSS	FOCAL	1	PEX5
TCGA.AA.A010.01A	12	7556100	7818394	25	-0.5822	SMALL-LOSS	FOCAL	3	"APOBEC1,CD163,CD163L1"
TCGA.AM.5820	12	7559800	7799138	61	-0.6674	SMALL-LOSS	FOCAL	2	"CD163,CD163L1"
TCGA.AG.3909.01A	12	7584992	7596608	4	-0.8856	SMALL-LOSS	FOCAL	1	CD163L1
TCGA.AG.4009.01A	12	7584992	7596608	4	-0.9631	SMALL-LOSS	FOCAL	1	CD163L1
TCGA.CK.5914.01A	12	7584992	7596608	4	-0.9303	SMALL-LOSS	FOCAL	1	CD163L1
TCGA.AG.A01W.01A	12	7693379	7838266	22	-0.9761	SMALL-LOSS	FOCAL	1	APOBEC1
TCGA.AA.A017.01A	12	7802106	7893970	15	-1.2365	SMALL-LOSS	FOCAL	4	"APOBEC1,CLEC4C,DPPA3,GDF3"
TCGA.AA.A00N.01A	12	7802106	7942162	20	-0.9043	SMALL-LOSS	FOCAL	6	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB"
TCGA.CK.5914.01A	12	7802106	7947017	22	-0.7128	SMALL-LOSS	FOCAL	6	"APOBEC1,CLEC4C,DPPA3,GDF3,NANOG,NANOGNB"
TCGA.AG.A01W.01A	12	7858153	8139834	37	-0.6381	SMALL-LOSS	FOCAL	6	"CLEC4C,DPPA3,NANOG,NANOGNB,SLC2A14,SLC2A3"
TCGA.AA.A00N.01A	12	8073982	8197304	14	-0.9054	SMALL-LOSS	FOCAL	2	"FOXJ2,SLC2A3"
TCGA.AA.A010.01A	12	8192397	8205340	9	-1.0178	SMALL-LOSS	FOCAL	1	FOXJ2
TCGA.AA.3850	12	8307357	8330795	6	-1.01105	SMALL-LOSS	FOCAL	1	ZNF705A
TCGA.AA.3815.01A	12	8374699	8376620	3	-0.6136	SMALL-LOSS	FOCAL	1	FAM90A1
TCGA.AA.3850	12	8622598	8674061	10	-1.28105	SMALL-LOSS	FOCAL	2	"CLEC4D,CLEC6A"
TCGA.AA.3941	12	8622598	8705405	19	-0.6687	SMALL-LOSS	FOCAL	3	"CLEC4D,CLEC4E,CLEC6A"
TCGA.AG.A01W.01A	12	8691914	8966449	52	-0.7591	SMALL-LOSS	FOCAL	4	"AICDA,CLEC4E,MFAP5,RIMKLB"
TCGA.AA.A017.01A	12	8975187	8998632	14	-1.0365	SMALL-LOSS	FOCAL	1	A2ML1
TCGA.AG.3909.01A	12	9220349	9262426	30	-0.8976	SMALL-LOSS	FOCAL	1	A2M
TCGA.CK.5914.01A	12	9220349	9264681	32	-0.6448	SMALL-LOSS	FOCAL	1	A2M
TCGA.AA.A010.01A	12	9571184	10137430	60	-0.5529	SMALL-LOSS	FOCAL	9	"CD69,CLEC12A,CLEC2A,CLEC2B,CLEC2D,CLECL1,KLRB1,KLRF1,KLRF2"
TCGA.AA.A03J	12	9610124	9626771	6	-1.1889	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6606	12	10147849	10517807	138	-0.7529	SMALL-LOSS	FOCAL	9	"CLEC12B,CLEC1A,CLEC1B,CLEC7A,CLEC9A,GABARAPL1,KLRD1,OLR1,TMEM52B"
TCGA.AG.3909.01A	12	10271020	10313343	10	-0.6298	SMALL-LOSS	FOCAL	2	"CLEC7A,OLR1"
TCGA.AG.3909.01A	12	10583668	10586339	3	-1.2847	SMALL-LOSS	FOCAL	1	KLRC2
TCGA.AG.4009.01A	12	10856611	10870615	5	-0.8281	SMALL-LOSS	FOCAL	1	YBX3
TCGA.CK.5914.01A	12	10868241	10871664	3	-1.1924	SMALL-LOSS	FOCAL	1	YBX3
TCGA.AA.3844	12	10913110	10930263	13	-0.8813	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3488	12	10915358	10915596	3	-1.1781	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3530	12	10915358	10936200	13	-1.1774	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3660	12	11493163	11633789	46	-0.6279	SMALL-LOSS	FOCAL	2	"PRB1,PRB2"
TCGA.AA.3532	12	11497998	11526288	8	-0.8486	SMALL-LOSS	FOCAL	1	PRB1
TCGA.AA.3524	12	11519427	11526288	4	-1.0996	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6898	12	11519427	11553367	4	-1.2998	SMALL-LOSS	FOCAL	1	PRB2
TCGA.AA.3844	12	11519427	11555010	6	-0.8478	SMALL-LOSS	FOCAL	1	PRB2
TCGA.A6.6653	12	11904751	12901163	378	-0.7281	SMALL-LOSS	FOCAL	10	"APOLD1,BCL2L14,CDKN1B,CREBL2,DUSP16,ETV6,GPR19,LOH12CR1,LRP6,MANSC1"
TCGA.AA.A00N.01A	12	12397174	12938530	26	-0.6743	SMALL-LOSS	FOCAL	8	"APOLD1,CDKN1B,CREBL2,DUSP16,GPR19,LOH12CR1,LRP6,MANSC1"
TCGA.A6.5662	12	12442272	12601952	44	-0.9778	SMALL-LOSS	FOCAL	2	"LOH12CR1,MANSC1"
TCGA.CK.5914.01A	12	12482934	12982340	37	-0.5164	SMALL-LOSS	FOCAL	8	"APOLD1,CDKN1B,CREBL2,DDX47,DUSP16,GPR19,LOH12CR1,MANSC1"
TCGA.AG.3909.01A	12	12514092	12938530	19	-0.6097	SMALL-LOSS	FOCAL	6	"APOLD1,CDKN1B,CREBL2,DUSP16,GPR19,LOH12CR1"
TCGA.AG.4009.01A	12	12870727	12871720	2	-1.1704	SMALL-LOSS	FOCAL	1	CDKN1B
TCGA.AG.4009.01A	12	13140057	13152932	3	-0.645	SMALL-LOSS	FOCAL	1	HEBP1
TCGA.CA.5254	12	13235943	13737713	316	-0.543	SMALL-LOSS	FOCAL	4	"EMP1,GRIN2B,GSG1,KIAA1467"
TCGA.AA.3850	12	14751271	14836304	28	-1.17685	SMALL-LOSS	FOCAL	1	GUCY2C
TCGA.AG.A026	12	14838468	14948761	33	-0.5692	SMALL-LOSS	FOCAL	4	"GUCY2C,H2AFJ,HIST4H4,WBP11"
TCGA.CK.5914.01A	12	14953614	14958915	3	-0.9262	SMALL-LOSS	FOCAL	3	"C12orf60,SMCO3,WBP11"
TCGA.AA.3844	12	15123070	15125335	6	-1.0906	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	12	15240272	15243990	5	-0.9185	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	12	15618897	15620857	5	-0.5544	SMALL-LOSS	FOCAL	1	PTPRO
TCGA.AA.3844	12	15635343	15635795	3	-1.1422	SMALL-LOSS	FOCAL	1	PTPRO
TCGA.AG.3909.01A	12	16035591	16055835	10	-0.8762	SMALL-LOSS	FOCAL	1	STRAP
TCGA.AA.A00N.01A	12	16036468	16055835	9	-0.7903	SMALL-LOSS	FOCAL	1	STRAP
TCGA.AA.A00N.01A	12	16189119	16516711	5	-0.6716	SMALL-LOSS	FOCAL	3	"DERA,MGST1,SLC15A5"
TCGA.AA.3850	12	16587184	19085799	679	-0.76945	SMALL-LOSS	FOCAL	5	"CAPZA3,LMO3,PIK3C2G,PLCZ1,RERGL"
TCGA.AG.4009.01A	12	18641375	18658209	6	-0.9712	SMALL-LOSS	FOCAL	1	PIK3C2G
TCGA.AG.3909.01A	12	18644367	18658209	5	-0.7229	SMALL-LOSS	FOCAL	1	PIK3C2G
TCGA.A6.3808.01A	12	18891185	19667558	36	-0.6983	SMALL-LOSS	FOCAL	3	"AEBP2,CAPZA3,PLEKHA5"
TCGA.AG.3909.01A	12	19440365	19501295	7	-0.8626	SMALL-LOSS	FOCAL	1	PLEKHA5
TCGA.AA.A00N.01A	12	19440365	19511172	12	-1.1853	SMALL-LOSS	FOCAL	1	PLEKHA5
TCGA.AA.A02E.01A	12	19489412	19615407	12	-1.0961	SMALL-LOSS	FOCAL	2	"AEBP2,PLEKHA5"
TCGA.CK.5914.01A	12	19489412	19615407	13	-0.7723	SMALL-LOSS	FOCAL	2	"AEBP2,PLEKHA5"
TCGA.AA.A02H.01A	12	19489412	19665269	15	-0.8561	SMALL-LOSS	FOCAL	2	"AEBP2,PLEKHA5"
TCGA.CK.6746	12	20132562	20498035	121	-0.7907	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6626	12	20335696	20337463	3	-0.9789	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	12	20695063	20729964	12	-0.7301	SMALL-LOSS	FOCAL	1	PDE3A
TCGA.CK.5914.01A	12	20858844	21015643	18	-0.6687	SMALL-LOSS	FOCAL	2	"SLCO1B3,SLCO1C1"
TCGA.AA.3930.01A	12	21427353	21459764	10	-0.604	SMALL-LOSS	FOCAL	1	SLCO1A2
TCGA.G4.6322	12	21545355	21634393	29	-0.5899	SMALL-LOSS	FOCAL	3	"PYROXD1,RECQL,SLCO1A2"
TCGA.AA.A00N.01A	12	21636261	21699230	20	-0.917	SMALL-LOSS	FOCAL	4	"GOLT1B,GYS2,RECQL,SPX"
TCGA.AG.3909.01A	12	21659767	21692146	10	-1.2156	SMALL-LOSS	FOCAL	3	"GOLT1B,GYS2,SPX"
TCGA.CK.5914.01A	12	21659767	21692146	11	-0.8333	SMALL-LOSS	FOCAL	3	"GOLT1B,GYS2,SPX"
TCGA.AG.A01L.01A	12	21679313	21683999	4	-0.5802	SMALL-LOSS	FOCAL	1	SPX
TCGA.AA.A00N.01A	12	21791240	21926239	7	-0.9284	SMALL-LOSS	FOCAL	2	"KCNJ8,LDHB"
TCGA.AG.4021	12	22188209	24320865	727	-0.6852	SMALL-LOSS	FOCAL	5	"C2CD5,CMAS,ETNK1,SOX5,ST8SIA1"
TCGA.AA.A00N.01A	12	22208036	22218018	7	-0.6861	SMALL-LOSS	FOCAL	1	CMAS
TCGA.AG.3909.01A	12	22208036	22218018	7	-0.564	SMALL-LOSS	FOCAL	1	CMAS
TCGA.AG.4009.01A	12	22796689	22837753	8	-0.5937	SMALL-LOSS	FOCAL	1	ETNK1
TCGA.AF.2693	12	23516142	23549972	8	-0.5794	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	12	23687101	24048680	14	-0.5193	SMALL-LOSS	FOCAL	1	SOX5
TCGA.AA.3858	12	23813479	23829882	13	-0.6645	SMALL-LOSS	FOCAL	1	SOX5
TCGA.AA.3850	12	23912045	24436052	188	-0.58435	SMALL-LOSS	FOCAL	1	SOX5
TCGA.AG.4021	12	24725651	24929441	79	-0.5394	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	12	25031417	25101767	5	-0.9566	SMALL-LOSS	FOCAL	1	BCAT1
TCGA.AG.3575	12	25449089	26285005	353	-0.6676	SMALL-LOSS	FOCAL	3	"BHLHE41,LMNTD1,RASSF8"
TCGA.AA.3952	12	25983264	26564511	263	-0.6154	SMALL-LOSS	FOCAL	4	"BHLHE41,ITPR2,RASSF8,SSPN"
TCGA.AA.A01Q.01A	12	26276526	26277405	3	-0.949	SMALL-LOSS	FOCAL	1	BHLHE41
TCGA.AA.A00L.01A	12	26276526	26383612	6	-0.7384	SMALL-LOSS	FOCAL	2	"BHLHE41,SSPN"
TCGA.AG.3909.01A	12	26276526	26383612	5	-0.7746	SMALL-LOSS	FOCAL	2	"BHLHE41,SSPN"
TCGA.CK.5914.01A	12	26276526	26383612	6	-1.0277	SMALL-LOSS	FOCAL	2	"BHLHE41,SSPN"
TCGA.F5.6465	12	26704995	27006890	110	-0.5322	SMALL-LOSS	FOCAL	1	ITPR2
TCGA.CK.5914.01A	12	27077241	27089460	6	-0.7076	SMALL-LOSS	FOCAL	1	ASUN
TCGA.AA.A010.01A	12	27461270	27521158	10	-0.9444	SMALL-LOSS	FOCAL	2	"ARNTL2,STK38L"
TCGA.AG.3909.01A	12	27867642	27876942	4	-0.8224	SMALL-LOSS	FOCAL	1	MRPS35
TCGA.AA.3850	12	28214627	28582983	86	-0.56285	SMALL-LOSS	FOCAL	1	CCDC91
TCGA.AA.3867	12	28528344	28651603	35	-0.6728	SMALL-LOSS	FOCAL	1	CCDC91
TCGA.AA.A00N.01A	12	29514497	29524409	5	-1.0266	SMALL-LOSS	FOCAL	1	ERGIC2
TCGA.D5.6539	12	29982782	29994183	3	-1.226	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3731	12	30239418	30247390	7	-0.6527	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A020	12	30409809	30411061	3	-1.3112	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	12	30862787	30881600	11	-0.8539	SMALL-LOSS	FOCAL	1	CAPRIN2
TCGA.AA.A02E.01A	12	30886518	31648697	52	-0.6196	SMALL-LOSS	FOCAL	5	"CAPRIN2,DDX11,DENND5B,FAM60A,TSPAN11"
TCGA.A6.5661	12	30968686	31387952	203	-1.0195	SMALL-LOSS	FOCAL	2	"DDX11,TSPAN11"
TCGA.AG.A01W.01A	12	30998134	31129144	17	-0.6543	SMALL-LOSS	FOCAL	1	TSPAN11
TCGA.AG.4015	12	31048577	32745423	619	-1.1939	SMALL-LOSS	FOCAL	10	"AMN1,BICD1,DDX11,DENND5B,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,TSPAN11"
TCGA.AA.A010.01A	12	31144734	31242769	9	-0.7164	SMALL-LOSS	FOCAL	2	"DDX11,TSPAN11"
TCGA.AG.A01W.01A	12	31222967	31504364	27	-0.7411	SMALL-LOSS	FOCAL	2	"DDX11,FAM60A"
TCGA.CK.5914.01A	12	31231281	31249208	13	-0.6565	SMALL-LOSS	FOCAL	1	DDX11
TCGA.A6.3808.01A	12	31253507	32760854	63	-0.5267	SMALL-LOSS	FOCAL	9	"AMN1,BICD1,DDX11,DENND5B,FAM60A,FGD4,H3F3C,KIAA1551,METTL20"
TCGA.AA.3811	12	31278030	31359744	16	-0.7454	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	12	31435599	31450959	5	-0.7255	SMALL-LOSS	FOCAL	1	FAM60A
TCGA.D5.6539	12	31513559	31541217	6	-0.8191	SMALL-LOSS	FOCAL	1	DENND5B
TCGA.AA.A01C.01A	12	31551061	31579189	8	-1.1172	SMALL-LOSS	FOCAL	1	DENND5B
TCGA.AG.3887	12	31907273	31909907	4	-1.0938	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	12	32136917	32139417	4	-0.7969	SMALL-LOSS	FOCAL	1	KIAA1551
TCGA.AA.3982	12	32535099	32536154	3	-0.7244	SMALL-LOSS	FOCAL	0	None
TCGA.AF.6655	12	32674644	34775884	510	-0.5299	SMALL-LOSS	FOCAL	6	"ALG10,DNM1L,FGD4,PKP2,SYT10,YARS2"
TCGA.CK.5914.01A	12	32729247	32772585	9	-0.6184	SMALL-LOSS	FOCAL	1	FGD4
TCGA.DC.4745	12	32960663	40285541	802	-0.8531	SMALL-LOSS	FOCAL	9	"ABCD2,ALG10,ALG10B,C12orf40,CPNE8,KIF21A,PKP2,SLC2A13,SYT10"
TCGA.AA.3982	12	33149939	33165711	5	-1.037	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	12	33244992	39014117	449	-0.74345	SMALL-LOSS	FOCAL	3	"ALG10,ALG10B,SYT10"
TCGA.AA.3982	12	33247385	33303609	25	-0.9276	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	12	33579077	38712025	7	-0.5831	SMALL-LOSS	FOCAL	3	"ALG10,ALG10B,SYT10"
TCGA.AA.3693	12	33726577	33731737	5	-0.7191	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A016.01A	12	34175487	38713911	6	-0.8221	SMALL-LOSS	FOCAL	2	"ALG10,ALG10B"
TCGA.AA.3941	12	34615718	39044653	157	-1.2587	SMALL-LOSS	FOCAL	1	ALG10B
TCGA.AA.3812	12	37880477	37913468	3	-0.9252	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3660	12	37880477	39497696	256	-0.7732	SMALL-LOSS	FOCAL	2	"ALG10B,CPNE8"
TCGA.AA.3949	12	38219776	38317802	4	-1.1921	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4021	12	38660463	38671948	4	-0.9297	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	12	38664694	39042411	89	-0.6646	SMALL-LOSS	FOCAL	1	ALG10B
TCGA.AG.A032.01A	12	39709666	39716461	4	-0.7641	SMALL-LOSS	FOCAL	1	KIF21A
TCGA.AA.A00D.01A	12	39713668	39761638	22	-0.5478	SMALL-LOSS	FOCAL	1	KIF21A
TCGA.AA.A00N.01A	12	40618893	40634246	6	-0.9653	SMALL-LOSS	FOCAL	1	LRRK2
TCGA.AG.3909.01A	12	40618893	40637312	7	-0.5818	SMALL-LOSS	FOCAL	1	LRRK2
TCGA.AA.A010.01A	12	40634246	40657564	8	-1.0452	SMALL-LOSS	FOCAL	1	LRRK2
TCGA.AA.A00L.01A	12	40728782	40749887	7	-0.6434	SMALL-LOSS	FOCAL	1	LRRK2
TCGA.AG.3909.01A	12	40734049	40760767	10	-0.8457	SMALL-LOSS	FOCAL	1	LRRK2
TCGA.CK.5914.01A	12	40740507	40758595	8	-0.8182	SMALL-LOSS	FOCAL	1	LRRK2
TCGA.AA.A010.01A	12	40840252	40944221	50	-0.792	SMALL-LOSS	FOCAL	1	MUC19
TCGA.AA.3850	12	41124361	41985636	315	-0.95545	SMALL-LOSS	FOCAL	2	"CNTN1,PDZRN4"
TCGA.AA.3660	12	41454137	43214483	643	-0.7912	SMALL-LOSS	FOCAL	7	"CNTN1,GXYLT1,PDZRN4,PPHLN1,PRICKLE1,YAF2,ZCRB1"
TCGA.AA.A010.01A	12	42523507	42781219	18	-1.2252	SMALL-LOSS	FOCAL	4	"GXYLT1,PPHLN1,YAF2,ZCRB1"
TCGA.CK.5914.01A	12	42716143	42748904	6	-1.037	SMALL-LOSS	FOCAL	2	"PPHLN1,ZCRB1"
TCGA.AA.A010.01A	12	42853583	43747960	8	-0.5235	SMALL-LOSS	FOCAL	1	PRICKLE1
TCGA.AA.A00N.01A	12	42859959	42866148	5	-0.6045	SMALL-LOSS	FOCAL	1	PRICKLE1
TCGA.DC.4745	12	43287687	46515653	882	-0.8823	SMALL-LOSS	FOCAL	10	"ADAMTS20,ANO6,ARID2,DBX2,IRAK4,NELL2,PUS7L,SCAF11,TMEM117,TWF1"
TCGA.AA.3850	12	43309205	43359049	26	-1.02905	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	12	43418419	43527722	37	-0.76825	SMALL-LOSS	FOCAL	0	None
TCGA.G5.6641	12	43419678	43420752	3	-0.9368	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3967.01A	12	43770300	43945583	30	-0.6516	SMALL-LOSS	FOCAL	1	ADAMTS20
TCGA.CK.5914.01A	12	43858377	43895908	7	-0.7948	SMALL-LOSS	FOCAL	1	ADAMTS20
TCGA.AA.A00N.01A	12	44177415	44238417	12	-1.2714	SMALL-LOSS	FOCAL	3	"IRAK4,TMEM117,TWF1"
TCGA.CK.5914.01A	12	44180170	44537279	12	-0.8562	SMALL-LOSS	FOCAL	3	"IRAK4,TMEM117,TWF1"
TCGA.AG.3909.01A	12	44189361	44238417	9	-1.0316	SMALL-LOSS	FOCAL	2	"TMEM117,TWF1"
TCGA.AG.4009.01A	12	44189361	44238417	9	-1.0239	SMALL-LOSS	FOCAL	2	"TMEM117,TWF1"
TCGA.AF.3914.01A	12	44190732	44198284	7	-1.0097	SMALL-LOSS	FOCAL	1	TWF1
TCGA.AG.3742	12	44272914	44711554	115	-0.6642	SMALL-LOSS	FOCAL	1	TMEM117
TCGA.AA.3850	12	44381398	45027007	158	-0.98845	SMALL-LOSS	FOCAL	2	"NELL2,TMEM117"
TCGA.AA.3860	12	44740920	44835333	26	-0.7098	SMALL-LOSS	FOCAL	1	TMEM117
TCGA.AF.3914.01A	12	45816693	46124959	4	-0.9692	SMALL-LOSS	FOCAL	2	"ANO6,ARID2"
TCGA.AG.A032.01A	12	46240583	46245780	5	-0.5797	SMALL-LOSS	FOCAL	1	ARID2
TCGA.AA.A00D.01A	12	46315824	46592358	11	-0.5247	SMALL-LOSS	FOCAL	2	"SCAF11,SLC38A1"
TCGA.AA.3844	12	46545489	46556244	6	-0.9061	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	12	46666831	46669738	4	-1.0376	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	12	46672864	46675686	6	-0.6337	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	12	46754842	46764910	10	-0.9738	SMALL-LOSS	FOCAL	1	SLC38A2
TCGA.CK.5914.01A	12	46756020	46764910	9	-1.0734	SMALL-LOSS	FOCAL	1	SLC38A2
TCGA.AA.A010.01A	12	47168784	47472190	11	-1.0401	SMALL-LOSS	FOCAL	2	"AMIGO2,SLC38A4"
TCGA.AG.4021	12	47613174	47630596	5	-1.2703	SMALL-LOSS	FOCAL	1	PCED1B
TCGA.AG.A01W.01A	12	47777656	47790504	13	-0.689	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A00H.01A	12	48090012	48096439	4	-0.8368	SMALL-LOSS	FOCAL	1	RPAP3
TCGA.AA.A00N.01A	12	48090012	48107008	8	-1.285	SMALL-LOSS	FOCAL	2	"ENDOU,RPAP3"
TCGA.A6.3808.01A	12	48131743	48188925	39	-0.6833	SMALL-LOSS	FOCAL	3	"HDAC7,RAPGEF3,SLC48A1"
TCGA.AA.A01Q.01A	12	48173896	48188543	15	-1.2778	SMALL-LOSS	FOCAL	2	"HDAC7,SLC48A1"
TCGA.A6.6653	12	48182086	48199738	6	-0.943	SMALL-LOSS	FOCAL	1	HDAC7
TCGA.AA.A010.01A	12	48183549	48195962	12	-0.9634	SMALL-LOSS	FOCAL	1	HDAC7
TCGA.AA.3524	12	48269649	48528418	107	-0.7299	SMALL-LOSS	FOCAL	5	"COL2A1,PFKM,SENP1,TMEM106C,VDR"
TCGA.CK.5914.01A	12	48357978	48367148	7	-1.271	SMALL-LOSS	FOCAL	2	"COL2A1,TMEM106C"
TCGA.AA.A01Q.01A	12	48358997	48368450	8	-1.0209	SMALL-LOSS	FOCAL	2	"COL2A1,TMEM106C"
TCGA.A6.3808.01A	12	48373244	48397986	30	-0.9663	SMALL-LOSS	FOCAL	1	COL2A1
TCGA.AG.A016.01A	12	48381357	48386590	4	-0.8959	SMALL-LOSS	FOCAL	1	COL2A1
TCGA.AA.A00N.01A	12	48386590	48393670	9	-1.1019	SMALL-LOSS	FOCAL	1	COL2A1
TCGA.CK.5914.01A	12	48388967	48397986	6	-1.0008	SMALL-LOSS	FOCAL	1	COL2A1
TCGA.A6.3808.01A	12	48458798	48490082	8	-0.7565	SMALL-LOSS	FOCAL	1	SENP1
TCGA.AA.A00N.01A	12	48482537	48495167	4	-0.9837	SMALL-LOSS	FOCAL	1	SENP1
TCGA.AA.A00N.01A	12	48544933	48921648	22	-1.1454	SMALL-LOSS	FOCAL	8	"ANP32D,ASB8,C12orf54,CCDC184,H1FNT,OR10AD1,OR8S1,ZNF641"
TCGA.AG.4009.01A	12	48723058	48888543	16	-0.6269	SMALL-LOSS	FOCAL	4	"ANP32D,C12orf54,H1FNT,ZNF641"
TCGA.AA.A010.01A	12	48877026	48886668	6	-0.9881	SMALL-LOSS	FOCAL	1	C12orf54
TCGA.AA.A010.01A	12	49162342	49162669	2	-0.9423	SMALL-LOSS	FOCAL	1	ADCY6
TCGA.AF.3914.01A	12	49164528	49237674	37	-0.8567	SMALL-LOSS	FOCAL	3	"ADCY6,CACNB3,DDX23"
TCGA.AA.A010.01A	12	49212638	49251740	26	-0.7785	SMALL-LOSS	FOCAL	3	"CACNB3,DDX23,RND1"
TCGA.AA.A01Q.01A	12	49217079	49239309	24	-1.0459	SMALL-LOSS	FOCAL	2	"CACNB3,DDX23"
TCGA.AG.3909.01A	12	49217079	49239309	24	-0.6949	SMALL-LOSS	FOCAL	2	"CACNB3,DDX23"
TCGA.AG.4009.01A	12	49217079	49239309	24	-1.1819	SMALL-LOSS	FOCAL	2	"CACNB3,DDX23"
TCGA.AG.A023.01A	12	49224200	49314681	27	-0.7955	SMALL-LOSS	FOCAL	3	"CCDC65,DDX23,RND1"
TCGA.AG.A032.01A	12	49312466	49333391	10	-0.8577	SMALL-LOSS	FOCAL	3	"ARF3,CCDC65,FKBP11"
TCGA.CK.5914.01A	12	49391342	49418584	15	-0.9284	SMALL-LOSS	FOCAL	3	"DDN,KMT2D,PRKAG1"
TCGA.AA.A010.01A	12	49396654	49406773	7	-1.1006	SMALL-LOSS	FOCAL	1	PRKAG1
TCGA.AA.A010.01A	12	49435650	49441697	9	-1.1661	SMALL-LOSS	FOCAL	1	KMT2D
TCGA.CK.5914.01A	12	49435650	49462763	24	-1.0443	SMALL-LOSS	FOCAL	2	"KMT2D,RHEBL1"
TCGA.AG.4009.01A	12	49439639	49463446	19	-0.5171	SMALL-LOSS	FOCAL	2	"KMT2D,RHEBL1"
TCGA.AA.A00N.01A	12	49441697	49448043	9	-0.8849	SMALL-LOSS	FOCAL	1	KMT2D
TCGA.AA.A00N.01A	12	49463446	49745083	52	-0.7559	SMALL-LOSS	FOCAL	10	"C1QL4,DHH,DNAJC22,LMBR1L,PRPH,RHEBL1,TROAP,TUBA1A,TUBA1B,TUBA1C"
TCGA.AA.A00N.01A	12	49908281	49935366	8	-0.835	SMALL-LOSS	FOCAL	2	"KCNH3,SPATS2"
TCGA.AA.A010.01A	12	49908281	49959260	27	-0.8931	SMALL-LOSS	FOCAL	3	"KCNH3,MCRS1,SPATS2"
TCGA.AG.A016.01A	12	49949355	49951425	4	-1.0852	SMALL-LOSS	FOCAL	1	KCNH3
TCGA.A6.3810.01A	12	50146704	50156566	7	-0.618	SMALL-LOSS	FOCAL	1	TMBIM6
TCGA.AA.A01Q.01A	12	50284394	50291722	5	-1.1302	SMALL-LOSS	FOCAL	1	FAIM2
TCGA.AG.4009.01A	12	50452500	50473647	7	-1.0566	SMALL-LOSS	FOCAL	1	ASIC1
TCGA.AA.A010.01A	12	50452500	50474273	8	-1.0208	SMALL-LOSS	FOCAL	1	ASIC1
TCGA.AA.A00N.01A	12	50452500	50492479	19	-1.0927	SMALL-LOSS	FOCAL	2	"ASIC1,SMARCD1"
TCGA.AG.3909.01A	12	50452500	50499309	22	-1.0286	SMALL-LOSS	FOCAL	3	"ASIC1,GPD1,SMARCD1"
TCGA.CK.5914.01A	12	50472649	50490596	13	-0.9131	SMALL-LOSS	FOCAL	2	"ASIC1,SMARCD1"
TCGA.AA.A01Q.01A	12	50472649	50499309	17	-0.8025	SMALL-LOSS	FOCAL	3	"ASIC1,GPD1,SMARCD1"
TCGA.AG.4009.01A	12	50474273	50484246	9	-0.5496	SMALL-LOSS	FOCAL	2	"ASIC1,SMARCD1"
TCGA.AA.3509.01A	12	50754552	50867730	18	-0.673	SMALL-LOSS	FOCAL	2	"FAM186A,LARP4"
TCGA.AZ.4684.01A	12	50821516	50867161	13	-0.6089	SMALL-LOSS	FOCAL	1	LARP4
TCGA.AG.A01W.01A	12	50852203	50913309	7	-0.6286	SMALL-LOSS	FOCAL	2	"DIP2B,LARP4"
TCGA.AG.3909.01A	12	50860695	50869281	4	-0.9516	SMALL-LOSS	FOCAL	1	LARP4
TCGA.AG.A01W.01A	12	51224532	51250703	13	-0.7231	SMALL-LOSS	FOCAL	1	TMPRSS12
TCGA.CK.5914.01A	12	51442765	51451777	5	-0.8287	SMALL-LOSS	FOCAL	1	LETMD1
TCGA.AG.3909.01A	12	51634079	51639674	4	-1.1402	SMALL-LOSS	FOCAL	2	"DAZAP2,SMAGP"
TCGA.AA.A00N.01A	12	51634079	51681855	9	-1.2566	SMALL-LOSS	FOCAL	3	"BIN2,DAZAP2,SMAGP"
TCGA.CK.5914.01A	12	51634079	51681855	9	-0.7469	SMALL-LOSS	FOCAL	3	"BIN2,DAZAP2,SMAGP"
TCGA.AG.4009.01A	12	51662949	51678438	3	-0.817	SMALL-LOSS	FOCAL	2	"BIN2,SMAGP"
TCGA.AG.A01W.01A	12	51979262	52001345	15	-0.8846	SMALL-LOSS	FOCAL	1	SCN8A
TCGA.CK.5914.01A	12	52200016	52314505	17	-0.5551	SMALL-LOSS	FOCAL	4	"ACVRL1,ANKRD33,FIGNL2,SCN8A"
TCGA.AG.3909.01A	12	52281942	52314505	14	-0.7279	SMALL-LOSS	FOCAL	2	"ACVRL1,ANKRD33"
TCGA.AG.3909.01A	12	52402897	52470549	11	-0.5647	SMALL-LOSS	FOCAL	3	"ATG101,GRASP,NR4A1"
TCGA.AA.A010.01A	12	52408476	52470549	8	-1.3097	SMALL-LOSS	FOCAL	3	"ATG101,GRASP,NR4A1"
TCGA.AG.3909.01A	12	52627041	52778783	47	-1.1858	SMALL-LOSS	FOCAL	6	"KRT7,KRT81,KRT83,KRT84,KRT85,KRT86"
TCGA.AG.4009.01A	12	52628902	52680489	9	-0.9297	SMALL-LOSS	FOCAL	2	"KRT7,KRT81"
TCGA.AA.A01Q.01A	12	52709010	52799643	33	-0.7027	SMALL-LOSS	FOCAL	4	"KRT82,KRT83,KRT84,KRT85"
TCGA.AG.A01W.01A	12	52960837	52964236	8	-0.9809	SMALL-LOSS	FOCAL	1	KRT74
TCGA.AG.3909.01A	12	53068957	53096674	15	-1.202	SMALL-LOSS	FOCAL	2	"KRT1,KRT77"
TCGA.AG.A01W.01A	12	53085177	53099033	8	-0.5532	SMALL-LOSS	FOCAL	1	KRT77
TCGA.AA.3715	12	53193414	53200179	5	-0.595	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	12	53256591	53310878	9	-0.7242	SMALL-LOSS	FOCAL	1	KRT8
TCGA.AA.A00N.01A	12	53294320	53517782	76	-0.769	SMALL-LOSS	FOCAL	7	"EIF4B,IGFBP6,KRT18,KRT8,SOAT2,SPRYD3,TNS2"
TCGA.CK.5914.01A	12	53431151	53517782	55	-0.5409	SMALL-LOSS	FOCAL	5	"EIF4B,IGFBP6,SOAT2,SPRYD3,TNS2"
TCGA.AG.3909.01A	12	53468385	53512600	15	-1.1045	SMALL-LOSS	FOCAL	3	"IGFBP6,SOAT2,SPRYD3"
TCGA.AG.4009.01A	12	53499654	53517782	11	-0.6624	SMALL-LOSS	FOCAL	1	SOAT2
TCGA.AA.A00N.01A	12	53563783	53567437	7	-0.5646	SMALL-LOSS	FOCAL	1	CSAD
TCGA.AA.A010.01A	12	53563783	53621094	35	-0.64	SMALL-LOSS	FOCAL	4	"CSAD,ITGB7,RARG,ZNF740"
TCGA.CK.5914.01A	12	53567082	53664425	36	-0.8418	SMALL-LOSS	FOCAL	6	"CSAD,ESPL1,ITGB7,MFSD5,RARG,ZNF740"
TCGA.AG.3909.01A	12	53573505	53609412	26	-1.185	SMALL-LOSS	FOCAL	4	"CSAD,ITGB7,RARG,ZNF740"
TCGA.AA.A01Q.01A	12	53585293	53679676	38	-0.6033	SMALL-LOSS	FOCAL	4	"ESPL1,ITGB7,MFSD5,RARG"
TCGA.AA.A00N.01A	12	53585604	53676865	36	-0.8481	SMALL-LOSS	FOCAL	4	"ESPL1,ITGB7,MFSD5,RARG"
TCGA.AG.4009.01A	12	53605428	53621094	8	-0.9361	SMALL-LOSS	FOCAL	1	RARG
TCGA.AG.3909.01A	12	53613687	53668553	10	-0.527	SMALL-LOSS	FOCAL	3	"ESPL1,MFSD5,RARG"
TCGA.AG.A016.01A	12	53691570	53702453	10	-0.696	SMALL-LOSS	FOCAL	3	"AAAS,C12orf10,PFDN5"
TCGA.CK.5914.01A	12	53836419	53880679	27	-0.726	SMALL-LOSS	FOCAL	3	"MAP3K12,PCBP2,PRR13"
TCGA.AG.3909.01A	12	53836419	53897453	29	-0.9683	SMALL-LOSS	FOCAL	4	"MAP3K12,PCBP2,PRR13,TARBP2"
TCGA.AA.A00N.01A	12	53874944	53901115	23	-0.5865	SMALL-LOSS	FOCAL	4	"MAP3K12,NPFF,PCBP2,TARBP2"
TCGA.AG.3909.01A	12	54338745	54448597	18	-1.2015	SMALL-LOSS	FOCAL	9	"HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9"
TCGA.AG.4009.01A	12	54338745	54448597	18	-0.6033	SMALL-LOSS	FOCAL	9	"HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9"
TCGA.AA.A01Q.01A	12	54348707	54428090	16	-1.1229	SMALL-LOSS	FOCAL	8	"HOXC10,HOXC11,HOXC12,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9"
TCGA.A6.3810.01A	12	54382901	54422269	7	-0.6745	SMALL-LOSS	FOCAL	5	"HOXC10,HOXC4,HOXC6,HOXC8,HOXC9"
TCGA.AG.A01W.01A	12	54499010	54581511	19	-0.8478	SMALL-LOSS	FOCAL	1	SMUG1
TCGA.AA.A00D.01A	12	54686146	54718885	3	-0.7372	SMALL-LOSS	FOCAL	2	"COPZ1,NFE2"
TCGA.AA.A00N.01A	12	54730948	54894292	45	-0.5165	SMALL-LOSS	FOCAL	6	"COPZ1,GPR84,GTSF1,ITGA5,NCKAP1L,ZNF385A"
TCGA.AG.3909.01A	12	54764700	54805567	22	-0.5766	SMALL-LOSS	FOCAL	2	"ITGA5,ZNF385A"
TCGA.A6.6654	12	54778822	54802089	3	-1.2303	SMALL-LOSS	FOCAL	2	"ITGA5,ZNF385A"
TCGA.AA.A01Q.01A	12	54790017	54802511	16	-0.866	SMALL-LOSS	FOCAL	1	ITGA5
TCGA.AG.A01W.01A	12	54810556	54840067	21	-0.6665	SMALL-LOSS	FOCAL	1	ITGA5
TCGA.AG.A01W.01A	12	54917603	54925467	7	-0.8132	SMALL-LOSS	FOCAL	1	NCKAP1L
TCGA.AA.A00N.01A	12	54925007	54982134	27	-0.6452	SMALL-LOSS	FOCAL	3	"NCKAP1L,PDE1B,PPP1R1A"
TCGA.AG.A01L.01A	12	54943609	54963976	5	-0.7707	SMALL-LOSS	FOCAL	1	PDE1B
TCGA.AA.3696	12	54977870	54984332	4	-0.548	SMALL-LOSS	FOCAL	1	PPP1R1A
TCGA.AG.A01W.01A	12	55352745	55395921	6	-1.1216	SMALL-LOSS	FOCAL	1	TESPA1
TCGA.AG.A01W.01A	12	55744070	55758618	6	-0.6443	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	12	55794302	56030649	7	-0.5372	SMALL-LOSS	FOCAL	7	"OR2AP1,OR6C2,OR6C4,OR6C65,OR6C68,OR6C70,OR6C76"
TCGA.AG.A01W.01A	12	55808953	55858913	26	-0.6328	SMALL-LOSS	FOCAL	2	"OR6C2,OR6C76"
TCGA.AG.A01W.01A	12	55926815	55934796	7	-0.9495	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	12	56075500	56120927	33	-0.6976	SMALL-LOSS	FOCAL	5	"BLOC1S1,CD63,ITGA7,METTL7B,RDH5"
TCGA.AA.A00N.01A	12	56093632	56154292	25	-0.8075	SMALL-LOSS	FOCAL	6	"BLOC1S1,CD63,GDF11,ITGA7,RDH5,SARNP"
TCGA.CK.5914.01A	12	56095080	56137092	18	-0.7965	SMALL-LOSS	FOCAL	5	"BLOC1S1,CD63,GDF11,ITGA7,RDH5"
TCGA.AA.A010.01A	12	56110667	56118059	7	-1.0279	SMALL-LOSS	FOCAL	2	"BLOC1S1,RDH5"
TCGA.AG.4009.01A	12	56112827	56120927	10	-0.8288	SMALL-LOSS	FOCAL	3	"BLOC1S1,CD63,RDH5"
TCGA.AG.A016.01A	12	56211378	56295648	19	-0.6666	SMALL-LOSS	FOCAL	5	"DNAJC14,MMP19,ORMDL2,SARNP,WIBG"
TCGA.CK.5914.01A	12	56216128	56231348	11	-0.6017	SMALL-LOSS	FOCAL	2	"DNAJC14,MMP19"
TCGA.AG.3909.01A	12	56330231	56332635	6	-0.8361	SMALL-LOSS	FOCAL	1	DGKA
TCGA.CK.5914.01A	12	56330231	56417400	42	-0.6425	SMALL-LOSS	FOCAL	6	"CDK2,DGKA,IKZF4,PMEL,RAB5B,SUOX"
TCGA.AG.3909.01A	12	56364799	56397380	10	-0.9864	SMALL-LOSS	FOCAL	3	"CDK2,RAB5B,SUOX"
TCGA.AA.A00N.01A	12	56380695	56397380	8	-1.2531	SMALL-LOSS	FOCAL	2	"RAB5B,SUOX"
TCGA.AA.A00N.01A	12	56477497	56498469	21	-0.7854	SMALL-LOSS	FOCAL	2	"ERBB3,PA2G4"
TCGA.AG.3909.01A	12	56477497	56498469	21	-0.5861	SMALL-LOSS	FOCAL	2	"ERBB3,PA2G4"
TCGA.CK.5914.01A	12	56477497	56498469	21	-0.5736	SMALL-LOSS	FOCAL	2	"ERBB3,PA2G4"
TCGA.CK.5914.01A	12	56500332	56527829	21	-1.1122	SMALL-LOSS	FOCAL	4	"ESYT1,PA2G4,RPL41,ZC3H10"
TCGA.AA.A00N.01A	12	56514327	56532497	13	-0.6656	SMALL-LOSS	FOCAL	2	"ESYT1,ZC3H10"
TCGA.AA.A00N.01A	12	56568386	56580954	12	-1.211	SMALL-LOSS	FOCAL	1	SMARCC2
TCGA.AA.A01Q.01A	12	56568386	56580954	12	-1.0244	SMALL-LOSS	FOCAL	1	SMARCC2
TCGA.CK.5914.01A	12	56568386	56580954	12	-1.0391	SMALL-LOSS	FOCAL	1	SMARCC2
TCGA.AG.4009.01A	12	56572516	56580954	9	-0.673	SMALL-LOSS	FOCAL	1	SMARCC2
TCGA.AG.A016.01A	12	56600182	56625021	10	-0.7263	SMALL-LOSS	FOCAL	3	"NABP2,RNF41,SLC39A5"
TCGA.AA.A010.01A	12	56604044	56607700	2	-0.8971	SMALL-LOSS	FOCAL	1	RNF41
TCGA.AG.A016.01A	12	56631320	56639113	7	-0.8633	SMALL-LOSS	FOCAL	2	"ANKRD52,SLC39A5"
TCGA.CK.5914.01A	12	56637528	56719072	50	-0.7223	SMALL-LOSS	FOCAL	5	"ANKRD52,CNPY2,COQ10A,CS,PAN2"
TCGA.AG.3909.01A	12	56637840	56718127	46	-0.8274	SMALL-LOSS	FOCAL	5	"ANKRD52,CNPY2,COQ10A,CS,PAN2"
TCGA.AG.4009.01A	12	56642258	56666827	16	-0.743	SMALL-LOSS	FOCAL	3	"ANKRD52,COQ10A,CS"
TCGA.AA.A010.01A	12	56645738	56680304	26	-0.7869	SMALL-LOSS	FOCAL	3	"ANKRD52,COQ10A,CS"
TCGA.AA.A00N.01A	12	56646251	56719072	41	-1.1441	SMALL-LOSS	FOCAL	5	"ANKRD52,CNPY2,COQ10A,CS,PAN2"
TCGA.A6.3810.01A	12	56662793	56704978	16	-0.5888	SMALL-LOSS	FOCAL	3	"CNPY2,COQ10A,CS"
TCGA.CK.5914.01A	12	56827506	56874025	19	-0.8141	SMALL-LOSS	FOCAL	4	"GLS2,MIP,SPRYD4,TIMELESS"
TCGA.AA.A00N.01A	12	56845015	56874025	18	-0.9055	SMALL-LOSS	FOCAL	3	"GLS2,MIP,SPRYD4"
TCGA.AG.3909.01A	12	56845015	56874025	18	-0.7517	SMALL-LOSS	FOCAL	3	"GLS2,MIP,SPRYD4"
TCGA.AA.A010.01A	12	57005289	57029871	6	-0.8127	SMALL-LOSS	FOCAL	1	BAZ2A
TCGA.AG.4009.01A	12	57029871	57038903	9	-1.1567	SMALL-LOSS	FOCAL	2	"ATP5B,BAZ2A"
TCGA.AA.A01Q.01A	12	57032058	57038515	7	-0.8029	SMALL-LOSS	FOCAL	1	ATP5B
TCGA.AA.A010.01A	12	57038515	57059923	6	-0.8641	SMALL-LOSS	FOCAL	2	"ATP5B,PTGES3"
TCGA.AA.A00N.01A	12	57038903	57066460	8	-1.0501	SMALL-LOSS	FOCAL	2	"ATP5B,PTGES3"
TCGA.AA.3509.01A	12	57059923	57178585	30	-0.5592	SMALL-LOSS	FOCAL	4	"HSD17B6,NACA,PRIM1,PTGES3"
TCGA.AZ.4684.01A	12	57059923	57178585	30	-0.5225	SMALL-LOSS	FOCAL	4	"HSD17B6,NACA,PRIM1,PTGES3"
TCGA.AG.A016.01A	12	57065496	57108086	6	-0.7888	SMALL-LOSS	FOCAL	2	"NACA,PTGES3"
TCGA.AA.3930.01A	12	57109677	57114573	4	-0.7419	SMALL-LOSS	FOCAL	1	NACA
TCGA.AG.3906.01A	12	57109677	57125412	6	-0.6616	SMALL-LOSS	FOCAL	2	"NACA,PRIM1"
TCGA.AG.3909.01A	12	57133026	57180862	13	-0.7596	SMALL-LOSS	FOCAL	2	"HSD17B6,PRIM1"
TCGA.AA.A010.01A	12	57167589	57317569	5	-0.7809	SMALL-LOSS	FOCAL	2	"HSD17B6,SDR9C7"
TCGA.AG.4009.01A	12	57167589	57407056	19	-0.7547	SMALL-LOSS	FOCAL	6	"GPR182,HSD17B6,RDH16,SDR9C7,TAC3,ZBTB39"
TCGA.AA.A01Q.01A	12	57389852	57407056	6	-0.5865	SMALL-LOSS	FOCAL	3	"GPR182,TAC3,ZBTB39"
TCGA.AG.A00H.01A	12	57464415	57486189	5	-0.6164	SMALL-LOSS	FOCAL	2	"NAB2,TMEM194A"
TCGA.AG.4009.01A	12	57484921	57496046	9	-0.5215	SMALL-LOSS	FOCAL	2	"NAB2,STAT6"
TCGA.AG.3909.01A	12	57484921	57496581	10	-0.6564	SMALL-LOSS	FOCAL	2	"NAB2,STAT6"
TCGA.AG.A016.01A	12	57537461	57569675	18	-0.5433	SMALL-LOSS	FOCAL	1	LRP1
TCGA.AG.A00H.01A	12	57553578	57570864	13	-0.533	SMALL-LOSS	FOCAL	1	LRP1
TCGA.AA.A01Q.01A	12	57561167	57569675	6	-1.1326	SMALL-LOSS	FOCAL	1	LRP1
TCGA.CK.5914.01A	12	57572656	57605223	45	-0.5922	SMALL-LOSS	FOCAL	1	LRP1
TCGA.AG.3909.01A	12	57577130	57584557	7	-1.1979	SMALL-LOSS	FOCAL	1	LRP1
TCGA.AA.A01Q.01A	12	57579293	57600267	26	-1.1287	SMALL-LOSS	FOCAL	1	LRP1
TCGA.AA.A010.01A	12	57584557	57590718	10	-0.9377	SMALL-LOSS	FOCAL	1	LRP1
TCGA.AG.3909.01A	12	57585076	57595232	18	-0.6186	SMALL-LOSS	FOCAL	1	LRP1
TCGA.A6.3808.01A	12	57593620	57625216	24	-1.188	SMALL-LOSS	FOCAL	3	"LRP1,NXPH4,SHMT2"
TCGA.AA.A01Q.01A	12	57601779	57623480	12	-0.7481	SMALL-LOSS	FOCAL	3	"LRP1,NXPH4,SHMT2"
TCGA.AA.3861.01A	12	57630741	57693094	29	-0.6026	SMALL-LOSS	FOCAL	3	"NDUFA4L2,R3HDM2,STAC3"
TCGA.AA.A010.01A	12	57637558	57649724	10	-0.6437	SMALL-LOSS	FOCAL	2	"R3HDM2,STAC3"
TCGA.AG.A016.01A	12	57640547	57677555	17	-0.5793	SMALL-LOSS	FOCAL	2	"R3HDM2,STAC3"
TCGA.AA.3864	12	57736214	57763294	3	-1.0338	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	12	57843022	57897969	35	-0.5452	SMALL-LOSS	FOCAL	5	"ARHGAP9,GLI1,INHBC,INHBE,MARS"
TCGA.AG.3909.01A	12	57849268	57939747	60	-0.9792	SMALL-LOSS	FOCAL	7	"ARHGAP9,DCTN2,DDIT3,GLI1,INHBE,MARS,MBD6"
TCGA.AA.A00N.01A	12	57857438	57881824	27	-1.0736	SMALL-LOSS	FOCAL	3	"ARHGAP9,GLI1,MARS"
TCGA.CK.5914.01A	12	57858847	57939747	58	-0.9169	SMALL-LOSS	FOCAL	6	"ARHGAP9,DCTN2,DDIT3,GLI1,MARS,MBD6"
TCGA.AG.A01L.01A	12	57870604	57872874	5	-0.519	SMALL-LOSS	FOCAL	1	ARHGAP9
TCGA.AF.3914.01A	12	57874493	57920318	22	-1.1626	SMALL-LOSS	FOCAL	3	"DDIT3,MARS,MBD6"
TCGA.AG.4009.01A	12	57882773	57883952	3	-0.8331	SMALL-LOSS	FOCAL	1	MARS
TCGA.AA.A01Q.01A	12	57905474	57918465	10	-1.085	SMALL-LOSS	FOCAL	3	"DDIT3,MARS,MBD6"
TCGA.AA.A01K.01A	12	57908464	57963728	34	-0.5451	SMALL-LOSS	FOCAL	5	"DCTN2,DDIT3,KIF5A,MARS,MBD6"
TCGA.AA.A00N.01A	12	57918037	57939747	18	-1.1898	SMALL-LOSS	FOCAL	2	"DCTN2,MBD6"
TCGA.AG.4009.01A	12	57919080	57924416	7	-1.0178	SMALL-LOSS	FOCAL	2	"DCTN2,MBD6"
TCGA.AG.A01L.01A	12	57924416	57925773	2	-1.1818	SMALL-LOSS	FOCAL	1	DCTN2
TCGA.AF.3914.01A	12	57925773	57929485	8	-0.6781	SMALL-LOSS	FOCAL	1	DCTN2
TCGA.AA.A01Q.01A	12	57975633	58023928	39	-0.6563	SMALL-LOSS	FOCAL	6	"ARHGEF25,B4GALNT1,DTX3,KIF5A,PIP4K2C,SLC26A10"
TCGA.AA.A00N.01A	12	57975633	58024716	44	-1.2166	SMALL-LOSS	FOCAL	6	"ARHGEF25,B4GALNT1,DTX3,KIF5A,PIP4K2C,SLC26A10"
TCGA.AG.3909.01A	12	57975633	58024716	42	-1.2669	SMALL-LOSS	FOCAL	6	"ARHGEF25,B4GALNT1,DTX3,KIF5A,PIP4K2C,SLC26A10"
TCGA.CK.5914.01A	12	57976322	58024716	43	-0.8807	SMALL-LOSS	FOCAL	6	"ARHGEF25,B4GALNT1,DTX3,KIF5A,PIP4K2C,SLC26A10"
TCGA.AF.3914.01A	12	57992806	58000651	8	-0.9005	SMALL-LOSS	FOCAL	2	"DTX3,PIP4K2C"
TCGA.AG.4009.01A	12	57992806	58014022	22	-0.9753	SMALL-LOSS	FOCAL	4	"ARHGEF25,DTX3,PIP4K2C,SLC26A10"
TCGA.AA.A01K.01A	12	57992806	58015433	25	-0.5844	SMALL-LOSS	FOCAL	4	"ARHGEF25,DTX3,PIP4K2C,SLC26A10"
TCGA.AA.A00N.01A	12	58109511	58194870	61	-1.0191	SMALL-LOSS	FOCAL	10	"AGAP2,AVIL,CDK4,CYP27B1,MARCH9,METTL1,METTL21B,OS9,TSFM,TSPAN31"
TCGA.AA.A024.01A	12	58110183	58112738	4	-0.652	SMALL-LOSS	FOCAL	1	OS9
TCGA.CK.5914.01A	12	58111601	58126611	16	-0.5284	SMALL-LOSS	FOCAL	2	"AGAP2,OS9"
TCGA.AG.4009.01A	12	58121419	58156878	26	-1.2144	SMALL-LOSS	FOCAL	5	"AGAP2,CDK4,CYP27B1,MARCH9,TSPAN31"
TCGA.AA.A01Q.01A	12	58121720	58164855	34	-0.736	SMALL-LOSS	FOCAL	6	"AGAP2,CDK4,CYP27B1,MARCH9,METTL1,TSPAN31"
TCGA.CK.5914.01A	12	58127779	58157822	21	-1.1358	SMALL-LOSS	FOCAL	5	"AGAP2,CDK4,CYP27B1,MARCH9,TSPAN31"
TCGA.AF.3914.01A	12	58130842	58143163	10	-0.882	SMALL-LOSS	FOCAL	3	"AGAP2,CDK4,TSPAN31"
TCGA.AG.3909.01A	12	58139903	58168360	23	-0.8459	SMALL-LOSS	FOCAL	6	"CDK4,CYP27B1,MARCH9,METTL1,METTL21B,TSPAN31"
TCGA.AF.3914.01A	12	58156878	58164855	10	-0.6169	SMALL-LOSS	FOCAL	2	"CYP27B1,METTL1"
TCGA.AA.A010.01A	12	58158505	58174006	11	-1.2159	SMALL-LOSS	FOCAL	3	"CYP27B1,METTL1,METTL21B"
TCGA.CK.5914.01A	12	58339332	58350433	5	-0.6578	SMALL-LOSS	FOCAL	1	XRCC6BP1
TCGA.AA.3941	12	58468121	58476809	10	-0.7704	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	12	58524913	58531578	5	-0.9495	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	12	58801522	62534425	1092	-0.78515	SMALL-LOSS	FOCAL	3	"FAM19A2,LRIG3,SLC16A7"
TCGA.CK.5914.01A	12	59307700	59313137	3	-0.9194	SMALL-LOSS	FOCAL	1	LRIG3
TCGA.AA.3982	12	59631275	62525779	775	-0.6825	SMALL-LOSS	FOCAL	2	"FAM19A2,SLC16A7"
TCGA.AA.3867	12	60493221	61694873	267	-0.5929	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A50U	12	60875690	60877347	4	-1.0039	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4008	12	61133433	62899756	482	-0.5154	SMALL-LOSS	FOCAL	3	"FAM19A2,MON2,USP15"
TCGA.F4.6459	12	62534425	62538089	5	-1.3073	SMALL-LOSS	FOCAL	1	FAM19A2
TCGA.CK.5914.01A	12	62860977	62902053	8	-0.6972	SMALL-LOSS	FOCAL	1	MON2
TCGA.AA.A00N.01A	12	62974027	62986319	4	-1.0183	SMALL-LOSS	FOCAL	1	MON2
TCGA.AA.3841	12	63624470	63626691	3	-1.1409	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	64040978	64238529	12	-1.0973	SMALL-LOSS	FOCAL	2	"DPY19L2,TMEM5"
TCGA.AG.3909.01A	12	64055077	64238529	11	-0.742	SMALL-LOSS	FOCAL	2	"DPY19L2,TMEM5"
TCGA.CK.5914.01A	12	64055077	64238529	11	-0.5553	SMALL-LOSS	FOCAL	2	"DPY19L2,TMEM5"
TCGA.AA.A01C.01A	12	64202405	64410705	5	-0.6395	SMALL-LOSS	FOCAL	2	"SRGAP1,TMEM5"
TCGA.AA.A00N.01A	12	64784044	64868002	28	-1.006	SMALL-LOSS	FOCAL	3	"C12orf56,TBK1,XPOT"
TCGA.AG.3909.01A	12	64803749	64808630	2	-1.073	SMALL-LOSS	FOCAL	1	XPOT
TCGA.CK.5914.01A	12	64803749	64811764	4	-0.9093	SMALL-LOSS	FOCAL	1	XPOT
TCGA.AG.4009.01A	12	64803749	64860679	26	-0.687	SMALL-LOSS	FOCAL	2	"TBK1,XPOT"
TCGA.A6.3808.01A	12	64808630	64853962	23	-1.2821	SMALL-LOSS	FOCAL	2	"TBK1,XPOT"
TCGA.AA.A01C.01A	12	64812615	64853962	20	-0.6291	SMALL-LOSS	FOCAL	2	"TBK1,XPOT"
TCGA.CK.5914.01A	12	64832971	64860679	7	-0.6836	SMALL-LOSS	FOCAL	2	"TBK1,XPOT"
TCGA.AA.A010.01A	12	64838782	64882250	13	-0.6582	SMALL-LOSS	FOCAL	2	"TBK1,XPOT"
TCGA.AG.3909.01A	12	64841797	64860679	5	-0.7701	SMALL-LOSS	FOCAL	2	"TBK1,XPOT"
TCGA.AG.A014.01A	12	64853962	65134327	31	-0.5511	SMALL-LOSS	FOCAL	3	"GNS,RASSF3,TBK1"
TCGA.AG.4009.01A	12	65514156	65563925	3	-0.8101	SMALL-LOSS	FOCAL	2	"LEMD3,WIF1"
TCGA.AA.A00N.01A	12	66218999	66641448	24	-0.9616	SMALL-LOSS	FOCAL	5	"HMGA2,IRAK3,LLPH,LOC100129940,TMBIM4"
TCGA.AG.3909.01A	12	66522655	66547073	7	-1.319	SMALL-LOSS	FOCAL	2	"LLPH,TMBIM4"
TCGA.CK.5914.01A	12	66522655	66547073	7	-1.2546	SMALL-LOSS	FOCAL	2	"LLPH,TMBIM4"
TCGA.CK.5914.01A	12	66563586	66641448	11	-0.6227	SMALL-LOSS	FOCAL	2	"IRAK3,TMBIM4"
TCGA.AG.4009.01A	12	66597474	66641448	10	-0.8788	SMALL-LOSS	FOCAL	1	IRAK3
TCGA.EI.6508	12	67264000	67368126	56	-0.8656	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	68042842	68055081	6	-0.9058	SMALL-LOSS	FOCAL	1	DYRK2
TCGA.AA.A00N.01A	12	68709821	68724860	6	-0.6912	SMALL-LOSS	FOCAL	1	MDM1
TCGA.AG.3909.01A	12	68709821	68724860	6	-0.7483	SMALL-LOSS	FOCAL	1	MDM1
TCGA.CK.5914.01A	12	68715096	68724860	5	-0.9638	SMALL-LOSS	FOCAL	1	MDM1
TCGA.AA.A00N.01A	12	69114836	69222504	25	-0.8465	SMALL-LOSS	FOCAL	3	"MDM2,NUP107,SLC35E3"
TCGA.CK.5914.01A	12	69126390	69994989	68	-0.5814	SMALL-LOSS	FOCAL	9	"CCT2,CPM,CPSF6,FRS2,LYZ,MDM2,NUP107,SLC35E3,YEATS4"
TCGA.AA.A00N.01A	12	69326418	69994989	40	-0.5775	SMALL-LOSS	FOCAL	6	"CCT2,CPM,CPSF6,FRS2,LYZ,YEATS4"
TCGA.AA.A010.01A	12	70133552	70188872	6	-1.129	SMALL-LOSS	FOCAL	1	RAB3IP
TCGA.AG.3909.01A	12	70133552	70209089	10	-1.2565	SMALL-LOSS	FOCAL	1	RAB3IP
TCGA.CK.5914.01A	12	70133552	70704628	12	-0.8176	SMALL-LOSS	FOCAL	3	"CNOT2,MYRFL,RAB3IP"
TCGA.AA.3850	12	70180359	70235725	18	-0.60835	SMALL-LOSS	FOCAL	2	"MYRFL,RAB3IP"
TCGA.AA.A010.01A	12	70713011	70760478	12	-1.0608	SMALL-LOSS	FOCAL	2	"CNOT2,KCNMB4"
TCGA.AA.A00N.01A	12	70986021	71016188	6	-0.8487	SMALL-LOSS	FOCAL	1	PTPRB
TCGA.AA.3850	12	71095834	71347417	100	-0.53655	SMALL-LOSS	FOCAL	1	PTPRR
TCGA.AA.3982	12	71229863	71355943	56	-0.7034	SMALL-LOSS	FOCAL	1	PTPRR
TCGA.AA.3850	12	71353875	73016267	513	-0.53225	SMALL-LOSS	FOCAL	9	"LGR5,RAB21,TBC1D15,THAP2,TMEM19,TPH2,TRHDE,TSPAN8,ZFC3H1"
TCGA.QL.A97D	12	71792891	71808005	3	-1.0277	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	12	72050647	72164345	14	-0.6245	SMALL-LOSS	FOCAL	4	"RAB21,THAP2,TMEM19,ZFC3H1"
TCGA.AG.3909.01A	12	72067981	72083364	4	-1.079	SMALL-LOSS	FOCAL	2	"THAP2,TMEM19"
TCGA.AA.A00N.01A	12	72067981	72167694	12	-0.981	SMALL-LOSS	FOCAL	3	"RAB21,THAP2,TMEM19"
TCGA.AA.3982	12	72748582	73714241	245	-0.7535	SMALL-LOSS	FOCAL	1	TRHDE
TCGA.AA.3850	12	73082469	73601485	131	-0.75495	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	12	73684566	75150280	329	-0.66115	SMALL-LOSS	FOCAL	1	ATXN7L3B
TCGA.AA.3870	12	73714241	73726749	5	-1.1567	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	12	73726749	76056024	588	-0.6542	SMALL-LOSS	FOCAL	7	"ATXN7L3B,CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1"
TCGA.AA.3850	12	75164091	75900587	200	-1.03645	SMALL-LOSS	FOCAL	6	"CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1"
TCGA.CA.6716	12	75636465	76781214	403	-0.7306	SMALL-LOSS	FOCAL	9	"BBS10,CAPS2,GLIPR1,GLIPR1L1,GLIPR1L2,KRR1,NAP1L1,OSBPL8,PHLDA1"
TCGA.AA.A00N.01A	12	75683380	75720151	12	-0.6762	SMALL-LOSS	FOCAL	1	CAPS2
TCGA.AG.3909.01A	12	75685464	75710055	7	-0.6293	SMALL-LOSS	FOCAL	1	CAPS2
TCGA.CK.5914.01A	12	75686988	75737425	13	-0.9384	SMALL-LOSS	FOCAL	2	"CAPS2,GLIPR1L1"
TCGA.AA.3502	12	76114453	76436192	150	-0.7179	SMALL-LOSS	FOCAL	1	PHLDA1
TCGA.AA.3844	12	76276421	76286574	3	-1.0762	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	12	76276421	76290685	5	-0.8692	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	76442130	76467934	13	-0.8095	SMALL-LOSS	FOCAL	1	NAP1L1
TCGA.CK.5914.01A	12	76462631	76741065	6	-0.7105	SMALL-LOSS	FOCAL	2	"BBS10,NAP1L1"
TCGA.AA.3850	12	76725204	76822660	16	-0.78915	SMALL-LOSS	FOCAL	2	"BBS10,OSBPL8"
TCGA.CK.5914.01A	12	77426769	77458268	8	-0.5648	SMALL-LOSS	FOCAL	1	E2F7
TCGA.AA.A00N.01A	12	77438385	77458268	5	-0.9956	SMALL-LOSS	FOCAL	1	E2F7
TCGA.AA.3842	12	78347541	79770527	421	-0.5411	SMALL-LOSS	FOCAL	2	"NAV3,SYT1"
TCGA.AG.4008	12	78641514	79905557	330	-0.5252	SMALL-LOSS	FOCAL	1	SYT1
TCGA.A6.2678	12	79360268	79510814	41	-0.7084	SMALL-LOSS	FOCAL	1	SYT1
TCGA.AA.A010.01A	12	80655712	80671889	7	-0.6398	SMALL-LOSS	FOCAL	1	OTOGL
TCGA.CK.5914.01A	12	80707249	80717472	5	-0.7953	SMALL-LOSS	FOCAL	1	OTOGL
TCGA.EI.6883	12	83674899	84370914	208	-0.6404	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	12	83885855	85737257	462	-0.5978	SMALL-LOSS	FOCAL	4	"ALX1,LRRIQ1,SLC6A15,TSPAN19"
TCGA.AA.3811	12	84817513	85999873	285	-0.7376	SMALL-LOSS	FOCAL	4	"ALX1,LRRIQ1,SLC6A15,TSPAN19"
TCGA.AA.3941	12	86371699	87472874	166	-0.7697	SMALL-LOSS	FOCAL	1	MGAT4C
TCGA.AA.A00N.01A	12	88420228	88429374	3	-0.7226	SMALL-LOSS	FOCAL	2	"C12orf29,C12orf50"
TCGA.AA.3844	12	89639369	89640357	3	-1.3201	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	12	89885665	89918843	4	-1.2127	SMALL-LOSS	FOCAL	3	"GALNT4,POC1B,POC1B-GALNT4"
TCGA.AA.3844	12	91630006	91658029	13	-0.7361	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	12	92131996	92159556	5	-1.0645	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00Q.01A	12	92537806	92814765	3	-0.805	SMALL-LOSS	FOCAL	2	"BTG1,CLLU1OS"
TCGA.AA.3941	12	92847517	92857199	8	-0.7394	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	12	93016480	93026992	14	-0.5492	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6155	12	93523664	94688687	437	-0.96	SMALL-LOSS	FOCAL	6	"CRADD,MRPL42,NUDT4,PLXNC1,SOCS2,UBE2N"
TCGA.AY.5543	12	94232374	94273894	16	-0.6571	SMALL-LOSS	FOCAL	1	CRADD
TCGA.AA.3941	12	94390905	94395781	4	-1.2172	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	12	95097787	95104333	5	-0.65545	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	95452039	95479505	7	-1.1668	SMALL-LOSS	FOCAL	2	"FGD6,NR2C1"
TCGA.AA.3850	12	96257865	96261567	5	-1.06545	SMALL-LOSS	FOCAL	2	"CCDC38,SNRPF"
TCGA.CK.5914.01A	12	96284558	96388488	28	-0.7915	SMALL-LOSS	FOCAL	3	"AMDHD1,CCDC38,HAL"
TCGA.AG.3909.01A	12	96300101	96370151	14	-1.1324	SMALL-LOSS	FOCAL	3	"AMDHD1,CCDC38,HAL"
TCGA.AA.A00N.01A	12	97151221	97313711	8	-0.9846	SMALL-LOSS	FOCAL	2	"CFAP54,NEDD1"
TCGA.CK.5914.01A	12	97301300	97313711	5	-0.9949	SMALL-LOSS	FOCAL	1	NEDD1
TCGA.AA.3867	12	98074882	98079882	6	-1.3124	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	12	98921612	99061272	28	-0.9952	SMALL-LOSS	FOCAL	4	"APAF1,IKBIP,SLC25A3,TMPO"
TCGA.AA.A00N.01A	12	98989189	99038263	11	-0.9701	SMALL-LOSS	FOCAL	2	"IKBIP,SLC25A3"
TCGA.CK.5914.01A	12	98989189	99038263	11	-0.7762	SMALL-LOSS	FOCAL	2	"IKBIP,SLC25A3"
TCGA.AG.3909.01A	12	98989189	99074033	23	-0.8183	SMALL-LOSS	FOCAL	3	"APAF1,IKBIP,SLC25A3"
TCGA.CK.5914.01A	12	99042096	99080499	14	-1.2995	SMALL-LOSS	FOCAL	1	APAF1
TCGA.AG.3909.01A	12	99126147	99145096	4	-0.5386	SMALL-LOSS	FOCAL	2	"ANKS1B,APAF1"
TCGA.AA.A00N.01A	12	99126147	99192651	8	-0.624	SMALL-LOSS	FOCAL	2	"ANKS1B,APAF1"
TCGA.G4.6322	12	99227153	100127877	249	-0.8607	SMALL-LOSS	FOCAL	2	"ANKS1B,FAM71C"
TCGA.AA.3509.01A	12	100463846	100657238	30	-0.5328	SMALL-LOSS	FOCAL	3	"ACTR6,DEPDC4,UHRF1BP1L"
TCGA.AZ.4684.01A	12	100480015	100657238	26	-0.5496	SMALL-LOSS	FOCAL	3	"ACTR6,DEPDC4,UHRF1BP1L"
TCGA.AG.3909.01A	12	100594597	100707163	21	-0.7237	SMALL-LOSS	FOCAL	3	"ACTR6,DEPDC4,SCYL2"
TCGA.CK.5914.01A	12	100594597	100751128	32	-0.782	SMALL-LOSS	FOCAL	4	"ACTR6,DEPDC4,SCYL2,SLC17A8"
TCGA.AA.A010.01A	12	100676697	100711531	9	-1.2238	SMALL-LOSS	FOCAL	1	SCYL2
TCGA.AG.3906.01A	12	100720363	101430804	44	-0.5425	SMALL-LOSS	FOCAL	5	"ANO4,GAS2L3,NR1H4,SCYL2,SLC17A8"
TCGA.CK.5914.01A	12	100926184	100956992	7	-1.1063	SMALL-LOSS	FOCAL	1	NR1H4
TCGA.AA.A00N.01A	12	100955611	100994143	4	-1.1701	SMALL-LOSS	FOCAL	2	"GAS2L3,NR1H4"
TCGA.AA.3844	12	101358281	101361321	5	-0.8639	SMALL-LOSS	FOCAL	1	ANO4
TCGA.AA.3844	12	101528317	101530565	5	-0.6042	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3492	12	101549403	101779963	76	-0.7645	SMALL-LOSS	FOCAL	2	"SLC5A8,UTP20"
TCGA.CK.5914.01A	12	102025299	102046409	11	-0.7754	SMALL-LOSS	FOCAL	1	MYBPC1
TCGA.AA.A00N.01A	12	102071828	102151291	24	-1.0739	SMALL-LOSS	FOCAL	4	"CHPT1,GNPTAB,MYBPC1,SYCP3"
TCGA.AG.3909.01A	12	102107830	102140883	14	-0.9335	SMALL-LOSS	FOCAL	3	"CHPT1,GNPTAB,SYCP3"
TCGA.CK.5914.01A	12	102127306	102131540	4	-1.1814	SMALL-LOSS	FOCAL	1	SYCP3
TCGA.AG.3891.01A	12	102433595	102455639	5	-0.5973	SMALL-LOSS	FOCAL	1	CCDC53
TCGA.AA.A00N.01A	12	102468110	102512092	9	-0.6811	SMALL-LOSS	FOCAL	1	NUP37
TCGA.AG.3909.01A	12	102468110	102512092	9	-0.6353	SMALL-LOSS	FOCAL	1	NUP37
TCGA.CK.5914.01A	12	102468110	102542066	10	-0.678	SMALL-LOSS	FOCAL	2	"NUP37,PARPBP"
TCGA.AG.A01W.01A	12	102566548	102573122	5	-0.5643	SMALL-LOSS	FOCAL	1	PARPBP
TCGA.AA.3660	12	102836065	103528191	249	-0.5892	SMALL-LOSS	FOCAL	3	"ASCL1,IGF1,PAH"
TCGA.AY.A71X	12	103507607	103877333	127	-0.767	SMALL-LOSS	FOCAL	1	C12orf42
TCGA.AA.A00N.01A	12	104025334	104054039	10	-1.177	SMALL-LOSS	FOCAL	1	STAB2
TCGA.AG.3909.01A	12	104025334	104054039	10	-0.6944	SMALL-LOSS	FOCAL	1	STAB2
TCGA.CK.5914.01A	12	104030837	104056617	11	-1.0393	SMALL-LOSS	FOCAL	1	STAB2
TCGA.CK.5914.01A	12	104325267	104345253	15	-1.0981	SMALL-LOSS	FOCAL	2	"C12orf73,HSP90B1"
TCGA.AG.4009.01A	12	104513430	104725265	22	-0.7437	SMALL-LOSS	FOCAL	3	"EID3,NFYB,TXNRD1"
TCGA.EI.6883	12	104596755	106556914	912	-0.6608	SMALL-LOSS	FOCAL	10	"ALDH1L2,APPL2,C12orf45,C12orf75,CHST11,EID3,KIAA1033,NUAK1,SLC41A2,TXNRD1"
TCGA.AG.3909.01A	12	104682662	104719062	10	-1.1046	SMALL-LOSS	FOCAL	2	"EID3,TXNRD1"
TCGA.AA.A010.01A	12	104705031	104742065	13	-0.9486	SMALL-LOSS	FOCAL	1	TXNRD1
TCGA.AF.3914.01A	12	104712674	104851141	11	-0.9962	SMALL-LOSS	FOCAL	2	"CHST11,TXNRD1"
TCGA.AG.3909.01A	12	105282764	105388218	7	-0.8364	SMALL-LOSS	FOCAL	2	"C12orf45,SLC41A2"
TCGA.AA.A00N.01A	12	105289001	105388218	7	-1.1189	SMALL-LOSS	FOCAL	2	"C12orf45,SLC41A2"
TCGA.AA.A00N.01A	12	105462449	105519780	13	-1.0258	SMALL-LOSS	FOCAL	2	"ALDH1L2,KIAA1033"
TCGA.AG.3909.01A	12	105504874	105514253	6	-1.1283	SMALL-LOSS	FOCAL	1	KIAA1033
TCGA.CK.5914.01A	12	105504874	105527500	11	-1.0299	SMALL-LOSS	FOCAL	1	KIAA1033
TCGA.AG.3909.01A	12	107360830	107386526	4	-0.5742	SMALL-LOSS	FOCAL	3	"CRY1,MTERF2,TMEM263"
TCGA.AG.4009.01A	12	108127950	108168956	12	-0.553	SMALL-LOSS	FOCAL	2	"ASCL4,PRDM4"
TCGA.AA.A00N.01A	12	108135957	108169986	10	-1.0536	SMALL-LOSS	FOCAL	2	"ASCL4,PRDM4"
TCGA.AA.A00N.01A	12	108918094	109055758	31	-0.7601	SMALL-LOSS	FOCAL	5	"CORO1C,ISCU,SART3,SELPLG,TMEM119"
TCGA.AG.4009.01A	12	109041128	109071999	8	-0.7029	SMALL-LOSS	FOCAL	1	CORO1C
TCGA.AA.A01Q.01A	12	109192737	109216993	11	-0.5929	SMALL-LOSS	FOCAL	1	SSH1
TCGA.AA.A010.01A	12	109216993	109294142	14	-0.7113	SMALL-LOSS	FOCAL	2	"DAO,SSH1"
TCGA.AG.3909.01A	12	109494450	109536941	16	-0.5344	SMALL-LOSS	FOCAL	3	"ALKBH2,UNG,USP30"
TCGA.CK.5914.01A	12	109536941	109547607	5	-1.1626	SMALL-LOSS	FOCAL	1	UNG
TCGA.AA.A010.01A	12	109723101	109746007	6	-0.7675	SMALL-LOSS	FOCAL	1	FOXN4
TCGA.AA.3509.01A	12	109746007	109883270	30	-0.5832	SMALL-LOSS	FOCAL	2	"FOXN4,MYO1H"
TCGA.AA.A00N.01A	12	109872779	109895754	15	-0.597	SMALL-LOSS	FOCAL	2	"KCTD10,MYO1H"
TCGA.AA.A01Q.01A	12	109964091	110206190	27	-0.577	SMALL-LOSS	FOCAL	4	"FAM222A,MMAB,MVK,UBE3B"
TCGA.CK.5914.01A	12	110002853	110024500	10	-1.16	SMALL-LOSS	FOCAL	2	"MMAB,MVK"
TCGA.AA.A010.01A	12	110290311	110346340	11	-0.7407	SMALL-LOSS	FOCAL	2	"GLTP,TCHP"
TCGA.AG.3909.01A	12	110340803	110354312	11	-0.8658	SMALL-LOSS	FOCAL	1	TCHP
TCGA.AA.A00N.01A	12	110433916	110503571	20	-0.5653	SMALL-LOSS	FOCAL	3	"ANKRD13A,C12orf76,GIT2"
TCGA.CK.5914.01A	12	110565154	110628673	12	-0.8304	SMALL-LOSS	FOCAL	1	IFT81
TCGA.AA.A00N.01A	12	110813820	110933770	32	-0.7092	SMALL-LOSS	FOCAL	5	"ANAPC7,ARPC3,FAM216A,GPN3,VPS29"
TCGA.CK.5914.01A	12	110832854	110945815	32	-0.8479	SMALL-LOSS	FOCAL	6	"ANAPC7,ARPC3,FAM216A,GPN3,RAD9B,VPS29"
TCGA.AG.3909.01A	12	110872900	110905896	14	-0.8862	SMALL-LOSS	FOCAL	2	"ARPC3,GPN3"
TCGA.AG.A01L.01A	12	110956432	110959935	3	-0.5171	SMALL-LOSS	FOCAL	1	RAD9B
TCGA.AA.A00N.01A	12	111120943	111321786	15	-0.8126	SMALL-LOSS	FOCAL	3	"CCDC63,HVCN1,PPP1CC"
TCGA.AA.A00N.01A	12	111923006	112227599	52	-0.5705	SMALL-LOSS	FOCAL	4	"ACAD10,ALDH2,ATXN2,BRAP"
TCGA.CK.5914.01A	12	111924515	111962978	11	-0.656	SMALL-LOSS	FOCAL	1	ATXN2
TCGA.AG.3909.01A	12	111947297	111957643	7	-1.0799	SMALL-LOSS	FOCAL	1	ATXN2
TCGA.AG.4009.01A	12	111947297	111957643	7	-0.9172	SMALL-LOSS	FOCAL	1	ATXN2
TCGA.CK.5914.01A	12	112110416	112228189	28	-0.5261	SMALL-LOSS	FOCAL	3	"ACAD10,ALDH2,BRAP"
TCGA.AG.4009.01A	12	112116938	112171685	13	-0.6421	SMALL-LOSS	FOCAL	2	"ACAD10,BRAP"
TCGA.AA.A010.01A	12	112743821	112846417	8	-0.6173	SMALL-LOSS	FOCAL	2	"HECTD4,RPL6"
TCGA.AG.4009.01A	12	112743821	112892346	12	-0.5253	SMALL-LOSS	FOCAL	3	"HECTD4,PTPN11,RPL6"
TCGA.AA.A00N.01A	12	112843121	112846417	7	-1.1905	SMALL-LOSS	FOCAL	1	RPL6
TCGA.CK.5914.01A	12	112843121	112846417	7	-0.7339	SMALL-LOSS	FOCAL	1	RPL6
TCGA.AA.3850	12	113156422	113158837	3	-1.17825	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	12	113440700	113545840	20	-0.6022	SMALL-LOSS	FOCAL	3	"DTX1,OAS2,RASAL1"
TCGA.AA.A01Q.01A	12	113515221	113552940	16	-1.0294	SMALL-LOSS	FOCAL	2	"DTX1,RASAL1"
TCGA.AA.A01Q.01A	12	113710384	113731027	19	-0.6295	SMALL-LOSS	FOCAL	1	TPCN1
TCGA.AA.A00L.01A	12	113905069	113909081	4	-0.6365	SMALL-LOSS	FOCAL	1	LHX5
TCGA.AG.4009.01A	12	113905069	113909081	4	-0.5456	SMALL-LOSS	FOCAL	1	LHX5
TCGA.AA.A00Q.01A	12	113905965	114260980	4	-0.6799	SMALL-LOSS	FOCAL	2	"LHX5,RBM19"
TCGA.AA.3966	12	113979655	114569460	310	-0.5714	SMALL-LOSS	FOCAL	1	RBM19
TCGA.F4.6461	12	114025543	115154193	571	-0.5971	SMALL-LOSS	FOCAL	3	"RBM19,TBX3,TBX5"
TCGA.AA.3982	12	114486318	114487019	3	-0.5891	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6510	12	114637847	114638974	3	-0.9899	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	12	114823225	115120600	14	-0.9649	SMALL-LOSS	FOCAL	2	"TBX3,TBX5"
TCGA.AG.4009.01A	12	114823225	115120600	14	-1.0272	SMALL-LOSS	FOCAL	2	"TBX3,TBX5"
TCGA.CK.5914.01A	12	114832519	115118633	12	-1.0903	SMALL-LOSS	FOCAL	2	"TBX3,TBX5"
TCGA.AA.3850	12	114966417	114966856	3	-0.95645	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3549	12	115087270	116378751	746	-0.7196	SMALL-LOSS	FOCAL	1	TBX3
TCGA.AA.3850	12	115548898	115570045	19	-0.52045	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	12	115551933	115553651	9	-0.6071	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	12	115552436	115553651	8	-0.8903	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	12	115624761	115627814	5	-0.94935	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	12	115699084	115732991	13	-0.6328	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	12	115729037	115732991	5	-0.6412	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	12	116059852	116069451	9	-0.63575	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	12	117583842	117627000	11	-0.5662	SMALL-LOSS	FOCAL	1	FBXO21
TCGA.AA.A00N.01A	12	118405851	118467516	11	-0.9989	SMALL-LOSS	FOCAL	2	"KSR2,RFC5"
TCGA.AG.3909.01A	12	118405851	118467516	10	-0.7174	SMALL-LOSS	FOCAL	2	"KSR2,RFC5"
TCGA.AA.A010.01A	12	118463494	118480927	11	-0.8365	SMALL-LOSS	FOCAL	2	"RFC5,WSB2"
TCGA.AA.A00D.01A	12	118589985	118639054	9	-0.5257	SMALL-LOSS	FOCAL	1	TAOK3
TCGA.CK.5914.01A	12	118651778	118823858	11	-0.8728	SMALL-LOSS	FOCAL	2	"SUDS3,TAOK3"
TCGA.D5.6924	12	118668113	118791119	18	-0.6351	SMALL-LOSS	FOCAL	1	TAOK3
TCGA.AA.A010.01A	12	118671448	118693201	7	-0.904	SMALL-LOSS	FOCAL	1	TAOK3
TCGA.AG.4009.01A	12	118671448	118828884	12	-0.6295	SMALL-LOSS	FOCAL	2	"SUDS3,TAOK3"
TCGA.AA.A00N.01A	12	118673316	118839493	14	-1.1199	SMALL-LOSS	FOCAL	2	"SUDS3,TAOK3"
TCGA.AG.A01W.01A	12	119097327	119100763	5	-0.9277	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	12	119180780	119248011	6	-0.7295	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	12	120106013	120166275	26	-0.5418	SMALL-LOSS	FOCAL	2	"CIT,PRKAB1"
TCGA.AG.3909.01A	12	120110054	120159067	24	-0.7243	SMALL-LOSS	FOCAL	2	"CIT,PRKAB1"
TCGA.AA.A00D.01A	12	120166275	120221661	16	-0.5477	SMALL-LOSS	FOCAL	1	CIT
TCGA.AA.A010.01A	12	120427625	120518644	7	-0.6905	SMALL-LOSS	FOCAL	1	CCDC64
TCGA.AA.A010.01A	12	120527704	120541578	5	-1.2417	SMALL-LOSS	FOCAL	2	"CCDC64,RAB35"
TCGA.AA.A010.01A	12	120572067	120580261	8	-1.101	SMALL-LOSS	FOCAL	1	GCN1L1
TCGA.AG.4009.01A	12	120628063	120636628	5	-1.1556	SMALL-LOSS	FOCAL	2	"GCN1L1,RPLP0"
TCGA.AG.A01W.01A	12	120765953	120780892	9	-0.8446	SMALL-LOSS	FOCAL	1	MSI1
TCGA.AG.4009.01A	12	120789079	120802446	6	-0.7157	SMALL-LOSS	FOCAL	1	MSI1
TCGA.CK.5914.01A	12	120795594	120959965	22	-0.9067	SMALL-LOSS	FOCAL	7	"COQ5,COX6A1,DYNLL1,GATC,MSI1,SRSF9,TRIAP1"
TCGA.CK.5914.01A	12	121013366	121175131	22	-0.7544	SMALL-LOSS	FOCAL	6	"ACADS,CABP1,MLEC,POP5,RNF10,UNC119B"
TCGA.AA.A010.01A	12	121088377	121176873	22	-1.2115	SMALL-LOSS	FOCAL	4	"ACADS,CABP1,MLEC,UNC119B"
TCGA.AY.A71X	12	121127346	121454312	101	-1.0223	SMALL-LOSS	FOCAL	6	"ACADS,C12orf43,HNF1A,MLEC,SPPL3,UNC119B"
TCGA.AA.A01Q.01A	12	121131852	121157673	6	-0.9759	SMALL-LOSS	FOCAL	2	"MLEC,UNC119B"
TCGA.AA.A00N.01A	12	121164801	121176873	8	-0.6302	SMALL-LOSS	FOCAL	1	ACADS
TCGA.AG.A01W.01A	12	121289036	121620135	76	-0.5985	SMALL-LOSS	FOCAL	5	"C12orf43,HNF1A,OASL,P2RX7,SPPL3"
TCGA.AG.3909.01A	12	121416532	121448604	11	-0.5299	SMALL-LOSS	FOCAL	2	"C12orf43,HNF1A"
TCGA.AA.A010.01A	12	121693339	121758129	12	-0.8298	SMALL-LOSS	FOCAL	2	"ANAPC5,CAMKK2"
TCGA.AG.3891.01A	12	122186193	122189985	3	-0.8659	SMALL-LOSS	FOCAL	1	TMEM120B
TCGA.AA.A010.01A	12	122208744	122231351	10	-0.8038	SMALL-LOSS	FOCAL	2	"RHOF,TMEM120B"
TCGA.AG.A01W.01A	12	122227140	122271841	12	-0.729	SMALL-LOSS	FOCAL	2	"RHOF,SETD1B"
TCGA.AA.A02K.01A	12	122231364	122242978	3	-0.7171	SMALL-LOSS	FOCAL	2	"RHOF,SETD1B"
TCGA.AA.A010.01A	12	122251965	122281599	10	-0.9223	SMALL-LOSS	FOCAL	2	"HPD,SETD1B"
TCGA.AG.A01L.01A	12	122286847	122295207	5	-0.81	SMALL-LOSS	FOCAL	1	HPD
TCGA.AG.3909.01A	12	122337519	122361536	6	-0.5244	SMALL-LOSS	FOCAL	2	"PSMD9,WDR66"
TCGA.CK.5914.01A	12	122413420	122748622	57	-0.7258	SMALL-LOSS	FOCAL	8	"B3GNT4,BCL7A,DIABLO,IL31,LRRC43,MLXIP,VPS33A,WDR66"
TCGA.AA.A010.01A	12	122669035	122709009	17	-1.2324	SMALL-LOSS	FOCAL	3	"B3GNT4,DIABLO,LRRC43"
TCGA.AG.3909.01A	12	122669035	122716745	17	-0.8483	SMALL-LOSS	FOCAL	4	"B3GNT4,DIABLO,LRRC43,VPS33A"
TCGA.AG.4009.01A	12	122669035	122720286	19	-0.8353	SMALL-LOSS	FOCAL	4	"B3GNT4,DIABLO,LRRC43,VPS33A"
TCGA.AA.A00N.01A	12	122685763	122726901	15	-1.2805	SMALL-LOSS	FOCAL	4	"B3GNT4,DIABLO,LRRC43,VPS33A"
TCGA.AA.A01Q.01A	12	122701002	122716745	5	-0.8879	SMALL-LOSS	FOCAL	2	"DIABLO,VPS33A"
TCGA.AA.A00D.01A	12	122763578	122818515	8	-0.5393	SMALL-LOSS	FOCAL	1	CLIP1
TCGA.AA.A00N.01A	12	122825280	123004973	30	-0.8465	SMALL-LOSS	FOCAL	3	"CLIP1,RSRC2,ZCCHC8"
TCGA.AG.4009.01A	12	122831874	122848488	6	-1.0015	SMALL-LOSS	FOCAL	1	CLIP1
TCGA.CK.5914.01A	12	122967760	122991325	8	-0.8304	SMALL-LOSS	FOCAL	2	"RSRC2,ZCCHC8"
TCGA.AA.3509.01A	12	122973872	123310891	93	-0.5612	SMALL-LOSS	FOCAL	8	"CCDC62,DENR,HCAR1,HCAR2,HCAR3,KNTC1,RSRC2,ZCCHC8"
TCGA.AA.A00N.01A	12	123064437	123070131	6	-1.135	SMALL-LOSS	FOCAL	1	KNTC1
TCGA.CK.5914.01A	12	123064437	123086038	14	-1.1145	SMALL-LOSS	FOCAL	1	KNTC1
TCGA.AA.A00N.01A	12	123082240	123095342	8	-1.1	SMALL-LOSS	FOCAL	1	KNTC1
TCGA.CK.5914.01A	12	123238228	123335717	25	-0.861	SMALL-LOSS	FOCAL	3	"CCDC62,DENR,HIP1R"
TCGA.AA.A00N.01A	12	123238228	123338552	26	-1.1618	SMALL-LOSS	FOCAL	3	"CCDC62,DENR,HIP1R"
TCGA.AA.A010.01A	12	123246644	123290650	15	-0.5267	SMALL-LOSS	FOCAL	2	"CCDC62,DENR"
TCGA.AA.A010.01A	12	123297788	123340031	12	-1.1866	SMALL-LOSS	FOCAL	2	"CCDC62,HIP1R"
TCGA.AG.4009.01A	12	123444142	123485279	18	-0.622	SMALL-LOSS	FOCAL	4	"ABCB9,ARL6IP4,OGFOD2,PITPNM2"
TCGA.CK.5914.01A	12	123641327	123649801	7	-0.8579	SMALL-LOSS	FOCAL	1	MPHOSPH9
TCGA.CK.5914.01A	12	123705867	123780403	7	-0.7386	SMALL-LOSS	FOCAL	4	"C12orf65,CDK2AP1,MPHOSPH9,SBNO1"
TCGA.AG.3909.01A	12	123738194	123746247	3	-1.0272	SMALL-LOSS	FOCAL	2	"C12orf65,CDK2AP1"
TCGA.AG.4009.01A	12	123741313	123751680	4	-0.5494	SMALL-LOSS	FOCAL	2	"C12orf65,CDK2AP1"
TCGA.AA.A010.01A	12	123780403	123793816	5	-1.1268	SMALL-LOSS	FOCAL	1	SBNO1
TCGA.AA.A010.01A	12	123804932	123810662	5	-0.857	SMALL-LOSS	FOCAL	1	SBNO1
TCGA.AA.A00N.01A	12	123825497	123874551	6	-0.6448	SMALL-LOSS	FOCAL	2	"SBNO1,SETD8"
TCGA.CK.5914.01A	12	123825497	123944344	17	-0.8017	SMALL-LOSS	FOCAL	4	"RILPL2,SBNO1,SETD8,SNRNP35"
TCGA.AA.A01Q.01A	12	123875128	123888049	4	-1.1863	SMALL-LOSS	FOCAL	1	SETD8
TCGA.AG.4009.01A	12	123875128	123891999	6	-0.6191	SMALL-LOSS	FOCAL	1	SETD8
TCGA.AG.3909.01A	12	123875128	123915018	9	-1.07	SMALL-LOSS	FOCAL	2	"RILPL2,SETD8"
TCGA.AA.A00N.01A	12	124008015	124140243	34	-0.9751	SMALL-LOSS	FOCAL	5	"DDX55,EIF2B1,GTF2H3,RILPL1,TMED2"
TCGA.AG.3909.01A	12	124071267	124116845	21	-0.9647	SMALL-LOSS	FOCAL	3	"DDX55,EIF2B1,TMED2"
TCGA.CK.5914.01A	12	124071267	124116845	22	-0.9111	SMALL-LOSS	FOCAL	3	"DDX55,EIF2B1,TMED2"
TCGA.CK.5914.01A	12	124156543	124288216	50	-0.6489	SMALL-LOSS	FOCAL	3	"ATP6V0A2,DNAH10,TCTN2"
TCGA.AA.A00N.01A	12	124172556	124288216	46	-0.7686	SMALL-LOSS	FOCAL	3	"ATP6V0A2,DNAH10,TCTN2"
TCGA.AG.4009.01A	12	124189042	124252098	22	-0.6984	SMALL-LOSS	FOCAL	3	"ATP6V0A2,DNAH10,TCTN2"
TCGA.AG.3909.01A	12	124238918	124268456	10	-1.0211	SMALL-LOSS	FOCAL	2	"ATP6V0A2,DNAH10"
TCGA.AA.3549	12	124371399	125415018	394	-0.7201	SMALL-LOSS	FOCAL	8	"CCDC92,DNAH10,FAM101A,NCOR2,SCARB1,UBC,ZNF664,ZNF664-FAM101A"
TCGA.A6.3808.01A	12	124387438	124831078	48	-1.0486	SMALL-LOSS	FOCAL	6	"CCDC92,DNAH10,FAM101A,NCOR2,ZNF664,ZNF664-FAM101A"
TCGA.AA.A00N.01A	12	124408263	124428748	17	-1.2491	SMALL-LOSS	FOCAL	2	"CCDC92,DNAH10"
TCGA.AG.3909.01A	12	124414902	124428748	10	-1.1031	SMALL-LOSS	FOCAL	2	"CCDC92,DNAH10"
TCGA.AA.3861.01A	12	124810709	124922413	36	-1.1025	SMALL-LOSS	FOCAL	1	NCOR2
TCGA.AA.3862.01A	12	124810709	124922413	37	-1.1091	SMALL-LOSS	FOCAL	1	NCOR2
TCGA.AA.A00N.01A	12	125348093	125397908	8	-1.3207	SMALL-LOSS	FOCAL	2	"SCARB1,UBC"
TCGA.EI.6883	12	125358295	126203466	325	-0.6974	SMALL-LOSS	FOCAL	5	"AACS,BRI3BP,DHX37,TMEM132B,UBC"
TCGA.AA.A010.01A	12	125450166	125497031	15	-0.9403	SMALL-LOSS	FOCAL	2	"BRI3BP,DHX37"
TCGA.EI.6507	12	126126339	126127701	4	-0.6461	SMALL-LOSS	FOCAL	1	TMEM132B
TCGA.EI.6883	12	126590522	127116584	256	-0.6829	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3693	12	126842741	126855225	4	-1.1572	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4015	12	127312885	127315004	5	-1.2489	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4015	12	127613814	128384478	362	-0.5725	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	12	128899487	129293293	6	-0.678	SMALL-LOSS	FOCAL	2	"SLC15A4,TMEM132C"
TCGA.EI.7002	12	129230512	129232296	5	-0.9636	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	12	129429791	131311689	58	-0.6688	SMALL-LOSS	FOCAL	6	"FZD10,GLT1D1,PIWIL1,RIMBP2,STX2,TMEM132D"
TCGA.AA.A00D.01A	12	129558373	130184313	9	-0.5225	SMALL-LOSS	FOCAL	1	TMEM132D
TCGA.AA.3941	12	129939380	129954539	9	-0.6785	SMALL-LOSS	FOCAL	1	TMEM132D
TCGA.AG.3909.01A	12	130184313	130834364	10	-1.0068	SMALL-LOSS	FOCAL	3	"FZD10,PIWIL1,TMEM132D"
TCGA.A6.6653	12	130299752	130331263	9	-1.3143	SMALL-LOSS	FOCAL	1	TMEM132D
TCGA.AA.A010.01A	12	130387748	130851638	19	-0.9184	SMALL-LOSS	FOCAL	3	"FZD10,PIWIL1,TMEM132D"
TCGA.DC.6155	12	130490616	130920015	264	-1.1687	SMALL-LOSS	FOCAL	3	"FZD10,PIWIL1,RIMBP2"
TCGA.AG.4009.01A	12	130831477	130841962	9	-0.6146	SMALL-LOSS	FOCAL	1	PIWIL1
TCGA.AG.3909.01A	12	130912675	130963419	10	-0.5796	SMALL-LOSS	FOCAL	1	RIMBP2
TCGA.AA.A01Q.01A	12	130929657	131623670	41	-0.7473	SMALL-LOSS	FOCAL	4	"ADGRD1,RAN,RIMBP2,STX2"
TCGA.AA.3660	12	131202989	131260330	27	-0.7727	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	12	131276387	131311689	9	-0.896	SMALL-LOSS	FOCAL	1	STX2
TCGA.AA.A010.01A	12	131280539	131561301	26	-0.6869	SMALL-LOSS	FOCAL	3	"ADGRD1,RAN,STX2"
TCGA.AG.4009.01A	12	131293116	131306185	3	-0.6106	SMALL-LOSS	FOCAL	1	STX2
TCGA.AG.3906.01A	12	131561301	132237631	19	-0.8074	SMALL-LOSS	FOCAL	2	"ADGRD1,SFSWAP"
TCGA.A6.2686	12	131814818	131816212	4	-0.6815	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	12	132283562	132428008	36	-1.1458	SMALL-LOSS	FOCAL	4	"MMP17,PUS1,SFSWAP,ULK1"
TCGA.A6.3808.01A	12	132393149	132636591	87	-1.0471	SMALL-LOSS	FOCAL	5	"DDX51,EP400,NOC4L,PUS1,ULK1"
TCGA.AG.3891.01A	12	132400914	132414208	5	-0.5162	SMALL-LOSS	FOCAL	2	"PUS1,ULK1"
TCGA.AG.4009.01A	12	132508300	133202654	44	-0.7157	SMALL-LOSS	FOCAL	8	"DDX51,EP400,FBRSL1,GALNT9,LRCOL1,NOC4L,P2RX2,POLE"
TCGA.AG.3909.01A	12	132512511	132561001	20	-1.2872	SMALL-LOSS	FOCAL	1	EP400
TCGA.AA.A010.01A	12	132593090	132636591	20	-1.2154	SMALL-LOSS	FOCAL	2	"DDX51,NOC4L"
TCGA.AA.3861.01A	12	132629349	133149070	23	-1.0707	SMALL-LOSS	FOCAL	3	"FBRSL1,GALNT9,NOC4L"
TCGA.AA.A010.01A	12	133218724	133241847	14	-0.5236	SMALL-LOSS	FOCAL	1	POLE
TCGA.AA.A010.01A	12	133244038	133251934	7	-1.0432	SMALL-LOSS	FOCAL	1	POLE
TCGA.AG.3909.01A	12	133244038	133272431	17	-0.8403	SMALL-LOSS	FOCAL	2	"POLE,PXMP2"
TCGA.CK.5914.01A	12	133252276	133509569	68	-0.9368	SMALL-LOSS	FOCAL	7	"ANKLE2,CHFR,GOLGA3,PGAM5,POLE,PXMP2,ZNF605"
TCGA.AA.A00N.01A	12	133252276	133522128	71	-1.1523	SMALL-LOSS	FOCAL	7	"ANKLE2,CHFR,GOLGA3,PGAM5,POLE,PXMP2,ZNF605"
TCGA.AG.4009.01A	12	133257723	133304567	9	-0.9864	SMALL-LOSS	FOCAL	4	"ANKLE2,PGAM5,POLE,PXMP2"
TCGA.AA.3660	12	133295500	133331536	11	-1.1709	SMALL-LOSS	FOCAL	2	"ANKLE2,PGAM5"
TCGA.AG.3909.01A	12	133351678	133501942	35	-0.9164	SMALL-LOSS	FOCAL	3	"CHFR,GOLGA3,ZNF605"
TCGA.AF.2692	13	19212261	19257567	7	-0.8148	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3548	13	19212261	20630520	323	-0.7282	SMALL-LOSS	FOCAL	6	"MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM2,ZMYM5"
TCGA.AA.A02K.01A	13	19323863	19755841	6	-0.7539	SMALL-LOSS	FOCAL	1	TUBA3C
TCGA.A6.6648	13	19591385	19724494	67	-0.7465	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	13	19600070	20411666	53	-1.1016	SMALL-LOSS	FOCAL	5	"MPHOSPH8,PSPC1,TPTE2,TUBA3C,ZMYM5"
TCGA.G4.6299	13	19739164	19745095	4	-0.8376	SMALL-LOSS	FOCAL	0	None
TCGA.F5.6465	13	19839603	19839758	3	-1.1934	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	13	19890897	19926544	20	-0.6039	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	13	19894553	19926643	18	-0.5405	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	13	19909764	19913340	3	-1.036	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	20216207	20224093	4	-0.8425	SMALL-LOSS	FOCAL	1	MPHOSPH8
TCGA.A6.5656	13	20260799	20939235	168	-0.5743	SMALL-LOSS	FOCAL	6	"GJA3,GJB2,GJB6,PSPC1,ZMYM2,ZMYM5"
TCGA.AA.A00N.01A	13	20333413	20425780	9	-0.6762	SMALL-LOSS	FOCAL	2	"PSPC1,ZMYM5"
TCGA.AA.A00N.01A	13	20656139	21189889	28	-0.8573	SMALL-LOSS	FOCAL	6	"CRYL1,GJA3,GJB2,GJB6,IFT88,ZMYM2"
TCGA.AG.3909.01A	13	20716068	21013685	8	-0.8947	SMALL-LOSS	FOCAL	4	"CRYL1,GJA3,GJB2,GJB6"
TCGA.AA.A00N.01A	13	21264807	21364553	12	-1.084	SMALL-LOSS	FOCAL	4	"IFT88,IL17D,N6AMT2,XPO4"
TCGA.AA.A010.01A	13	21720937	21753139	14	-0.6893	SMALL-LOSS	FOCAL	3	"MRPL57,SAP18,SKA3"
TCGA.AA.3844	13	22318441	22320177	6	-0.7821	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	13	22318441	22320177	6	-1.0333	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	13	22318441	22320177	6	-0.7925	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	13	22319428	22320177	4	-0.8492	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6683	13	22669057	22673511	4	-0.5473	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	13	22981150	22996105	3	-0.9214	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	13	22981150	22996105	3	-1.1818	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	13	23692788	23695126	5	-1.07	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	13	24460422	24470909	4	-1.1792	SMALL-LOSS	FOCAL	3	"C1QTNF9B,C1QTNF9B-AS1,MIPEP"
TCGA.AA.3977	13	24485914	24492935	9	-0.6241	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3742	13	24629786	24633049	6	-0.7597	SMALL-LOSS	FOCAL	1	SPATA13
TCGA.A6.3808.01A	13	24863109	25284923	59	-0.9373	SMALL-LOSS	FOCAL	4	"ATP12A,C1QTNF9,PARP4,SPATA13"
TCGA.AA.A00N.01A	13	25064755	25072205	5	-1.2974	SMALL-LOSS	FOCAL	1	PARP4
TCGA.AG.3909.01A	13	25068684	25285432	25	-0.642	SMALL-LOSS	FOCAL	2	"ATP12A,PARP4"
TCGA.AA.A00N.01A	13	25262405	25285432	17	-0.7959	SMALL-LOSS	FOCAL	1	ATP12A
TCGA.AA.A00N.01A	13	25448205	25451097	2	-0.6196	SMALL-LOSS	FOCAL	1	RNF17
TCGA.AA.A00N.01A	13	25453297	25459397	4	-1.0806	SMALL-LOSS	FOCAL	2	"CENPJ,RNF17"
TCGA.AG.3909.01A	13	25459397	25670295	12	-0.8526	SMALL-LOSS	FOCAL	2	"CENPJ,PABPC3"
TCGA.AA.A010.01A	13	25895095	26114403	18	-0.7637	SMALL-LOSS	FOCAL	2	"ATP8A2,NUPL1"
TCGA.AA.3681	13	25978572	25979655	3	-0.847	SMALL-LOSS	FOCAL	1	ATP8A2
TCGA.QL.A97D	13	26137812	26141875	3	-1.0129	SMALL-LOSS	FOCAL	1	ATP8A2
TCGA.DM.A1D0	13	26482230	26709459	119	-0.8208	SMALL-LOSS	FOCAL	2	"ATP8A2,SHISA2"
TCGA.AG.3909.01A	13	26593987	26793596	6	-0.7854	SMALL-LOSS	FOCAL	3	"ATP8A2,RNF6,SHISA2"
TCGA.AA.A00N.01A	13	26593987	26828751	7	-0.9466	SMALL-LOSS	FOCAL	3	"ATP8A2,RNF6,SHISA2"
TCGA.DM.A1D0	13	26751197	26755513	6	-0.8503	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3833	13	27455415	27459891	5	-0.9976	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	13	27486543	27507586	10	-0.5384	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	13	27827849	28014084	16	-0.5337	SMALL-LOSS	FOCAL	4	"GTF3A,MTIF3,RASL11A,RPL21"
TCGA.AA.A00N.01A	13	28196047	28578142	14	-0.6812	SMALL-LOSS	FOCAL	6	"CDX2,FLT3,GSX1,PDX1,POLR1D,URAD"
TCGA.AA.3544	13	29822046	29827132	3	-0.5227	SMALL-LOSS	FOCAL	1	MTUS2
TCGA.AA.3977	13	30344935	30346187	3	-1.1377	SMALL-LOSS	FOCAL	1	UBL3
TCGA.AG.4021	13	31408075	32490658	470	-0.8526	SMALL-LOSS	FOCAL	5	"B3GALTL,HSPH1,MEDAG,RXFP2,TEX26"
TCGA.AG.3727	13	31573639	31574250	3	-0.7893	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	31717908	31803288	15	-1.2402	SMALL-LOSS	FOCAL	2	"B3GALTL,HSPH1"
TCGA.AA.3982	13	32108928	32139016	11	-1.0201	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3680	13	32478443	33778468	506	-0.7108	SMALL-LOSS	FOCAL	8	"BRCA2,FRY,KL,N4BP2L1,N4BP2L2,PDS5B,STARD13,ZAR1L"
TCGA.AF.2693	13	32541520	33899066	553	-0.5945	SMALL-LOSS	FOCAL	8	"BRCA2,FRY,KL,N4BP2L1,N4BP2L2,PDS5B,STARD13,ZAR1L"
TCGA.AA.A00N.01A	13	32877964	32910374	13	-1.2859	SMALL-LOSS	FOCAL	2	"BRCA2,ZAR1L"
TCGA.AA.A00N.01A	13	32970986	33020424	12	-0.6431	SMALL-LOSS	FOCAL	3	"BRCA2,N4BP2L1,N4BP2L2"
TCGA.AA.A010.01A	13	33257978	33316692	13	-1.1476	SMALL-LOSS	FOCAL	1	PDS5B
TCGA.AA.A00N.01A	13	33270939	33315191	8	-1.0517	SMALL-LOSS	FOCAL	1	PDS5B
TCGA.AA.A02K.01A	13	33627858	33859561	20	-0.8658	SMALL-LOSS	FOCAL	2	"KL,STARD13"
TCGA.CK.4952.01A	13	34513063	35117961	51	-0.8018	SMALL-LOSS	FOCAL	1	RFC3
TCGA.AA.3941	13	34734407	34743713	9	-0.6435	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	13	36046540	36049685	3	-0.8449	SMALL-LOSS	FOCAL	2	"MAB21L1,NBEA"
TCGA.AA.3941	13	36364244	36367081	5	-0.7513	SMALL-LOSS	FOCAL	1	DCLK1
TCGA.AA.3941	13	36719922	36723015	4	-0.7137	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	36903451	37007158	7	-0.7165	SMALL-LOSS	FOCAL	2	"CCNA1,SPG20"
TCGA.AA.3941	13	37092246	37098414	8	-0.539	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	13	37106662	37111260	7	-1.2654	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	13	37580032	37605641	19	-1.035	SMALL-LOSS	FOCAL	2	"EXOSC8,SUPT20H"
TCGA.AA.A00N.01A	13	37591334	37619375	15	-0.5235	SMALL-LOSS	FOCAL	1	SUPT20H
TCGA.AA.3872	13	37858888	37865144	7	-0.8776	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	13	37864797	37879960	12	-0.6591	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3866	13	37878746	37879960	4	-0.8721	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A0XD	13	38769088	38805925	18	-0.5593	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	38928308	39271782	10	-1.2528	SMALL-LOSS	FOCAL	2	"FREM2,UFM1"
TCGA.AG.3909.01A	13	39600367	39621773	13	-0.6234	SMALL-LOSS	FOCAL	2	"NHLRC3,PROSER1"
TCGA.AG.A01W.01A	13	39690767	39698831	4	-0.921	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5820	13	39943961	40242370	151	-0.7965	SMALL-LOSS	FOCAL	2	"COG6,LHFP"
TCGA.AA.A00N.01A	13	41507564	41656812	17	-1.3029	SMALL-LOSS	FOCAL	2	"ELF1,WBP4"
TCGA.AA.A00N.01A	13	41890925	41905356	7	-1.1312	SMALL-LOSS	FOCAL	1	NAA16
TCGA.AA.A010.01A	13	42161600	42259144	8	-0.5306	SMALL-LOSS	FOCAL	1	VWA8
TCGA.AG.3909.01A	13	42439810	42524024	10	-0.5313	SMALL-LOSS	FOCAL	1	VWA8
TCGA.AA.A010.01A	13	42465504	42703641	7	-0.6408	SMALL-LOSS	FOCAL	2	"DGKH,VWA8"
TCGA.AA.3850	13	42698284	42703393	8	-1.22515	SMALL-LOSS	FOCAL	1	DGKH
TCGA.AA.3941	13	44443722	44448131	8	-0.622	SMALL-LOSS	FOCAL	1	CCDC122
TCGA.AA.3664	13	44550397	44974742	199	-0.6779	SMALL-LOSS	FOCAL	2	"SERP2,SMIM2"
TCGA.AA.A010.01A	13	44953717	45149837	7	-1.0446	SMALL-LOSS	FOCAL	2	"SERP2,TSC22D1"
TCGA.AZ.4315	13	45753231	46564608	273	-0.7367	SMALL-LOSS	FOCAL	9	"COG3,ERICH6B,GTF2F2,KCTD4,SIAH3,SLC25A30,SPERT,TPT1,ZC3H13"
TCGA.AG.3909.01A	13	45911456	46065508	25	-0.5245	SMALL-LOSS	FOCAL	3	"COG3,SLC25A30,TPT1"
TCGA.AF.2693	13	46744144	46757196	7	-0.7179	SMALL-LOSS	FOCAL	1	LCP1
TCGA.AF.2693	13	46802356	46845646	18	-0.5964	SMALL-LOSS	FOCAL	1	LRRC63
TCGA.AF.2693	13	47085717	47090613	5	-0.8759	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2693	13	47362387	47397453	16	-0.6672	SMALL-LOSS	FOCAL	1	ESD
TCGA.AA.3850	13	47487757	48273756	340	-0.57165	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	13	48017731	48025116	5	-1.0045	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	13	48017731	48030397	6	-1.1301	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2693	13	48186176	48587082	134	-0.5445	SMALL-LOSS	FOCAL	1	SUCLA2
TCGA.AA.A00N.01A	13	49086135	49095954	5	-0.5177	SMALL-LOSS	FOCAL	1	RCBTB2
TCGA.AA.3982	13	49472484	49478027	6	-0.8286	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	49771814	49796146	6	-0.9202	SMALL-LOSS	FOCAL	2	"FNDC3A,MLNR"
TCGA.AA.A00N.01A	13	50041952	50055032	4	-0.7154	SMALL-LOSS	FOCAL	1	SETDB2
TCGA.AA.3819	13	50428989	50614598	29	-0.7281	SMALL-LOSS	FOCAL	3	"KCNRG,SPRYD7,TRIM13"
TCGA.AA.3844	13	52052855	52073128	5	-0.69	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	52332276	52373622	10	-1.0659	SMALL-LOSS	FOCAL	2	"DHRS12,WDFY2"
TCGA.AA.A00N.01A	13	52586486	53238085	70	-1.2848	SMALL-LOSS	FOCAL	9	"ALG11,CKAP2,HNRNPA1L2,NEK3,NEK5,SUGT1,THSD1,UTP14C,VPS36"
TCGA.AA.A010.01A	13	52606399	52715118	24	-0.7881	SMALL-LOSS	FOCAL	3	"NEK3,NEK5,UTP14C"
TCGA.AA.A010.01A	13	53007744	53049041	15	-1.215	SMALL-LOSS	FOCAL	2	"CKAP2,VPS36"
TCGA.AG.4009.01A	13	53298081	53420680	7	-0.5869	SMALL-LOSS	FOCAL	2	"LECT1,PCDH8"
TCGA.AA.3850	13	53928245	56774643	735	-0.86625	SMALL-LOSS	FOCAL	0	None
TCGA.QG.A5Z1	13	55062951	67963446	3345	-0.5673	SMALL-LOSS	FOCAL	10	"DIAPH3,PCDH17,PCDH20,PCDH9,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,TDRD3"
TCGA.AA.3850	13	56777986	58428576	258	-0.82395	SMALL-LOSS	FOCAL	6	"PCDH17,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E"
TCGA.G4.6295	13	57763750	57806674	4	-0.693	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	13	58545611	59246293	178	-0.71905	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6536	13	58583349	58597029	4	-0.6864	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	13	58591106	58597029	3	-1.298	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5538	13	58591106	58597029	3	-0.735	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6600	13	59231394	59233057	3	-0.792	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	13	59828986	59838318	9	-0.5854	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	13	61435281	73065494	3357	-0.82215	SMALL-LOSS	FOCAL	4	"DACH1,KLHL1,PCDH20,PCDH9"
TCGA.DC.6682	13	61441801	61503218	31	-0.5366	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	13	61456473	61462164	8	-0.9175	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A022	13	63373780	66285179	721	-0.5598	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	13	63381332	63384964	6	-0.6606	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3667	13	64224204	64234561	5	-0.6992	SMALL-LOSS	FOCAL	0	None
TCGA.A6.4105	13	64224791	64234561	4	-1.051	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D9	13	65129939	65183778	14	-0.7457	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3673	13	65441891	65467556	3	-1.0478	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6682	13	67528572	67532299	3	-0.7703	SMALL-LOSS	FOCAL	1	PCDH9
TCGA.AA.3966	13	68107480	68121612	10	-0.7583	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	13	68107480	68149577	24	-1.156	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D9	13	69069935	69143335	23	-0.5465	SMALL-LOSS	FOCAL	0	None
TCGA.4T.AA8H	13	69248298	69260034	3	-0.8124	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3561	13	69248298	69260034	3	-1.1396	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6310	13	69248298	69260034	3	-1.1826	SMALL-LOSS	FOCAL	0	None
TCGA.A6.4105	13	69550860	69618140	30	-0.6187	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3966	13	69712206	70294315	151	-0.5351	SMALL-LOSS	FOCAL	1	KLHL1
TCGA.AA.3986	13	70808989	70817038	3	-1.146	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2680	13	71280033	71280382	3	-0.9547	SMALL-LOSS	FOCAL	0	None
TCGA.SS.A7HO	13	71280033	71280382	3	-0.5876	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	72255890	73372035	41	-0.9316	SMALL-LOSS	FOCAL	5	"BORA,DACH1,DIS3,MZT1,PIBF1"
TCGA.D5.6930	13	72953896	72954053	3	-0.8747	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3968	13	73111757	73113042	3	-0.7164	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A02E.01A	13	73344987	73357559	12	-0.5266	SMALL-LOSS	FOCAL	2	"DIS3,PIBF1"
TCGA.AG.3909.01A	13	73346782	73354936	7	-0.5445	SMALL-LOSS	FOCAL	1	DIS3
TCGA.A6.2675	13	74603914	74605073	3	-0.8624	SMALL-LOSS	FOCAL	1	KLF12
TCGA.AA.3681	13	74603914	74605073	3	-0.6019	SMALL-LOSS	FOCAL	1	KLF12
TCGA.AA.3989	13	74603914	74605073	3	-1.0713	SMALL-LOSS	FOCAL	1	KLF12
TCGA.A6.2675	13	74718938	74720423	3	-1.1284	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4021	13	76071663	77052758	405	-0.7053	SMALL-LOSS	FOCAL	4	"COMMD6,LMO7,LMO7DN,UCHL3"
TCGA.AG.3909.01A	13	76100661	76134872	6	-0.9	SMALL-LOSS	FOCAL	2	"COMMD6,UCHL3"
TCGA.AA.A00N.01A	13	76100661	76210767	16	-0.725	SMALL-LOSS	FOCAL	3	"COMMD6,LMO7,UCHL3"
TCGA.AG.3909.01A	13	77531113	77595626	9	-0.7362	SMALL-LOSS	FOCAL	3	"CLN5,FBXL3,IRG1"
TCGA.AA.A010.01A	13	77657125	77672583	10	-0.865	SMALL-LOSS	FOCAL	1	MYCBP2
TCGA.AA.A010.01A	13	78293684	78477264	13	-0.742	SMALL-LOSS	FOCAL	2	"EDNRB,SLAIN1"
TCGA.AA.3850	13	78460688	78918152	188	-0.82425	SMALL-LOSS	FOCAL	1	EDNRB
TCGA.F5.6810	13	78665651	78666317	3	-0.8042	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	80910903	92002803	9	-1.0173	SMALL-LOSS	FOCAL	4	"SLITRK1,SLITRK5,SLITRK6,SPRY2"
TCGA.AA.3850	13	81009170	94973270	4107	-0.65215	SMALL-LOSS	FOCAL	5	"GPC5,GPC6,SLITRK1,SLITRK5,SLITRK6"
TCGA.CA.5254	13	81209592	81230928	7	-0.8362	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A022	13	82881408	85615257	785	-0.5428	SMALL-LOSS	FOCAL	1	SLITRK1
TCGA.AA.3667	13	83947270	83951768	3	-1.2623	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3986	13	83947270	83951768	3	-1.1435	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6923	13	86321210	86321511	3	-0.9312	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3952	13	86480979	88950351	517	-0.6853	SMALL-LOSS	FOCAL	1	SLITRK5
TCGA.A6.2686	13	87289547	90569040	768	-0.6973	SMALL-LOSS	FOCAL	1	SLITRK5
TCGA.AG.3909.01A	13	88327594	92002803	3	-0.8924	SMALL-LOSS	FOCAL	1	SLITRK5
TCGA.AG.4009.01A	13	88327594	92002803	3	-0.9582	SMALL-LOSS	FOCAL	1	SLITRK5
TCGA.AA.3697	13	88897034	88934068	7	-0.5813	SMALL-LOSS	FOCAL	0	None
TCGA.A6.A56B	13	92424208	92501539	27	-1.2376	SMALL-LOSS	FOCAL	1	GPC5
TCGA.A6.A56B	13	92616020	92759012	38	-0.677	SMALL-LOSS	FOCAL	1	GPC5
TCGA.AZ.4681	13	93525591	95541906	802	-1.3191	SMALL-LOSS	FOCAL	5	"DCT,GPC6,GPR180,SOX21,TGDS"
TCGA.AA.A00N.01A	13	95226973	95363441	21	-0.5863	SMALL-LOSS	FOCAL	3	"GPR180,SOX21,TGDS"
TCGA.A6.5661	13	95451492	95573431	59	-1.291	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2672	13	95478887	95573431	46	-1.126	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A0XD	13	95718487	95795076	34	-0.7104	SMALL-LOSS	FOCAL	1	ABCC4
TCGA.AA.A00N.01A	13	96204966	96230113	4	-0.6516	SMALL-LOSS	FOCAL	1	CLDN10
TCGA.AA.A00N.01A	13	96246157	96361464	15	-0.5718	SMALL-LOSS	FOCAL	2	"DNAJC3,DZIP1"
TCGA.AA.3941	13	97291475	97401330	23	-0.5374	SMALL-LOSS	FOCAL	1	HS6ST3
TCGA.AA.3956	13	97338026	97399013	11	-0.5913	SMALL-LOSS	FOCAL	1	HS6ST3
TCGA.AA.3941	13	97443460	97458696	4	-0.8312	SMALL-LOSS	FOCAL	1	HS6ST3
TCGA.AA.A00N.01A	13	97639009	99171459	74	-0.5722	SMALL-LOSS	FOCAL	7	"FARP1,IPO5,MBNL2,OXGR1,RAP2A,RNF113B,STK24"
TCGA.AG.4015	13	98530123	98530795	5	-1.1964	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	13	99087803	99173966	19	-0.5531	SMALL-LOSS	FOCAL	2	"FARP1,STK24"
TCGA.AG.3909.01A	13	99098304	99134448	13	-0.604	SMALL-LOSS	FOCAL	2	"FARP1,STK24"
TCGA.G5.6572	13	99237842	99238168	3	-0.9623	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	99738449	99907082	7	-1.1226	SMALL-LOSS	FOCAL	3	"DOCK9,GPR18,UBAC2"
TCGA.AG.4009.01A	13	99890631	99896720	3	-0.6831	SMALL-LOSS	FOCAL	1	UBAC2
TCGA.AA.A010.01A	13	99890631	99907082	4	-0.7039	SMALL-LOSS	FOCAL	2	"GPR18,UBAC2"
TCGA.G4.6295	13	100346888	100353309	3	-0.6606	SMALL-LOSS	FOCAL	1	CLYBL
TCGA.AZ.4682	13	100384765	100385359	3	-0.7513	SMALL-LOSS	FOCAL	1	CLYBL
TCGA.AA.A01Q.01A	13	100543531	100637150	7	-0.6948	SMALL-LOSS	FOCAL	3	"CLYBL,ZIC2,ZIC5"
TCGA.AG.4009.01A	13	100543531	100637150	6	-0.7621	SMALL-LOSS	FOCAL	3	"CLYBL,ZIC2,ZIC5"
TCGA.AG.3909.01A	13	101167654	101277831	8	-0.9923	SMALL-LOSS	FOCAL	3	"GGACT,PCCA,TMTC4"
TCGA.AG.4009.01A	13	101257206	101277831	5	-0.6465	SMALL-LOSS	FOCAL	1	TMTC4
TCGA.AA.3955	13	101521804	101522766	3	-0.5895	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	13	102188076	102204833	11	-0.6412	SMALL-LOSS	FOCAL	1	ITGBL1
TCGA.AA.3982	13	102480579	102518689	13	-1.2468	SMALL-LOSS	FOCAL	1	FGF14
TCGA.AA.A00N.01A	13	102568776	103275189	8	-0.7208	SMALL-LOSS	FOCAL	2	"FGF14,TPP2"
TCGA.AA.A010.01A	13	103381840	103486759	35	-0.8403	SMALL-LOSS	FOCAL	5	"BIVM,BIVM-ERCC5,CCDC168,KDELC1,TEX30"
TCGA.A6.3808.01A	13	103410714	103527640	40	-0.7281	SMALL-LOSS	FOCAL	6	"BIVM,BIVM-ERCC5,CCDC168,ERCC5,KDELC1,TEX30"
TCGA.AG.3909.01A	13	103418703	103459650	16	-0.8126	SMALL-LOSS	FOCAL	4	"BIVM,BIVM-ERCC5,KDELC1,TEX30"
TCGA.AA.3850	13	103986284	106205674	1048	-0.65285	SMALL-LOSS	FOCAL	1	DAOA
TCGA.NH.A50T	13	105029616	105031493	3	-0.8964	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3955	13	105806799	105807582	7	-1.1429	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3949	13	105806953	105807582	6	-1.1262	SMALL-LOSS	FOCAL	0	None
TCGA.CA.6715	13	107096622	107097909	4	-0.5873	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	107164883	108886098	17	-1.0376	SMALL-LOSS	FOCAL	5	"ABHD13,ARGLU1,EFNB2,FAM155A,LIG4"
TCGA.AA.A01S	13	107888164	108340862	269	-0.99665	SMALL-LOSS	FOCAL	1	FAM155A
TCGA.AA.3850	13	108051083	108273855	132	-0.75195	SMALL-LOSS	FOCAL	1	FAM155A
TCGA.AA.3941	13	108179297	108185606	6	-1.0355	SMALL-LOSS	FOCAL	1	FAM155A
TCGA.A6.6650	13	108378234	108390591	3	-0.7808	SMALL-LOSS	FOCAL	1	FAM155A
TCGA.A6.2686	13	108937451	109133490	85	-0.7744	SMALL-LOSS	FOCAL	1	TNFSF13B
TCGA.AA.A00N.01A	13	111082196	111121527	22	-0.6436	SMALL-LOSS	FOCAL	1	COL4A2
TCGA.AA.A00N.01A	13	111274591	111562918	32	-0.9914	SMALL-LOSS	FOCAL	4	"ANKRD10,CARKD,CARS2,ING1"
TCGA.AD.6890	13	111588966	111590027	3	-1.1738	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3887	13	111588966	111590027	3	-0.8471	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	13	113213573	113862253	118	-0.9269	SMALL-LOSS	FOCAL	8	"ATP11A,ATP11AUN,F10,F7,MCF2L,PCID2,PROZ,TUBGCP3"
TCGA.AA.A01Q.01A	13	113488838	113536098	16	-0.7869	SMALL-LOSS	FOCAL	1	ATP11A
TCGA.AA.A010.01A	13	113526000	113783719	58	-0.8164	SMALL-LOSS	FOCAL	4	"ATP11A,F10,F7,MCF2L"
TCGA.AG.A02X.01A	13	113736694	113771029	10	-1.2356	SMALL-LOSS	FOCAL	2	"F7,MCF2L"
TCGA.AG.A016.01A	13	113794796	113795181	2	-1.218	SMALL-LOSS	FOCAL	1	F10
TCGA.AA.A01Q.01A	13	114240072	114312296	18	-0.8308	SMALL-LOSS	FOCAL	2	"ATP4B,TFDP1"
TCGA.AA.A00N.01A	13	114277445	114542667	39	-0.5392	SMALL-LOSS	FOCAL	5	"ATP4B,GAS6,GRK1,TFDP1,TMEM255B"
TCGA.AA.3862.01A	13	114507823	115030573	48	-0.8777	SMALL-LOSS	FOCAL	5	"CDC16,GAS6,LINC00452,RASA3,TMEM255B"
TCGA.AA.A010.01A	13	114529934	115089311	59	-0.878	SMALL-LOSS	FOCAL	6	"CDC16,CHAMP1,GAS6,LINC00452,RASA3,UPF3A"
TCGA.AA.A00N.01A	13	114549444	115089311	52	-1.3022	SMALL-LOSS	FOCAL	6	"CDC16,CHAMP1,GAS6,LINC00452,RASA3,UPF3A"
TCGA.AA.3986	13	114861494	114879712	3	-0.5384	SMALL-LOSS	FOCAL	1	RASA3
TCGA.AG.3891.01A	14	19377557	19553730	3	-0.5176	SMALL-LOSS	FOCAL	2	"OR11H12,POTEG"
TCGA.AH.6549.01A	14	19377557	20019687	7	-1.2144	SMALL-LOSS	FOCAL	3	"OR11H12,POTEG,POTEM"
TCGA.AA.A00N.01A	14	19377557	20020161	8	-0.786	SMALL-LOSS	FOCAL	3	"OR11H12,POTEG,POTEM"
TCGA.AG.A01W.01A	14	19881568	19892077	8	-0.5628	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3731	14	20224002	20232625	3	-0.5572	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3807	14	20224002	20281463	5	-1.223	SMALL-LOSS	FOCAL	2	"OR4M1,OR4N2"
TCGA.AA.3973	14	20224002	20281463	5	-0.9051	SMALL-LOSS	FOCAL	2	"OR4M1,OR4N2"
TCGA.AA.3977	14	20224002	20332796	9	-1.0672	SMALL-LOSS	FOCAL	2	"OR4M1,OR4N2"
TCGA.AG.3574	14	20224002	20332796	9	-0.9107	SMALL-LOSS	FOCAL	2	"OR4M1,OR4N2"
TCGA.AA.3867	14	20224002	20348471	10	-1.2307	SMALL-LOSS	FOCAL	3	"OR4K2,OR4M1,OR4N2"
TCGA.EI.7004	14	20224002	20348471	10	-0.6243	SMALL-LOSS	FOCAL	3	"OR4K2,OR4M1,OR4N2"
TCGA.AG.3594	14	20224002	20362819	10	-0.54	SMALL-LOSS	FOCAL	3	"OR4K2,OR4M1,OR4N2"
TCGA.F5.6812	14	20224002	20362819	11	-1.3008	SMALL-LOSS	FOCAL	3	"OR4K2,OR4M1,OR4N2"
TCGA.AA.3548	14	20224002	20389720	11	-0.8027	SMALL-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AA.3555	14	20224002	20389720	12	-0.5346	SMALL-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AF.2692	14	20224002	20389720	12	-1.1646	SMALL-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AG.3583	14	20224002	20389720	11	-1.1804	SMALL-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AG.4021	14	20224002	20389720	11	-0.6549	SMALL-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.D5.6931	14	20224002	20389720	12	-0.5356	SMALL-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.EI.6885	14	20224002	20389720	12	-0.5728	SMALL-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.F4.6460	14	20224002	20389720	11	-0.607	SMALL-LOSS	FOCAL	4	"OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AA.3561	14	20224002	20417540	13	-0.644	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.NH.A50T	14	20224002	20417540	13	-0.9937	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.A6.6780	14	20224002	20420150	15	-0.5842	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.A6.5657	14	20224002	20422582	16	-0.6307	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AG.3883	14	20224002	20424925	17	-1.0654	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AG.3893	14	20224002	20424925	15	-1.234	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AG.3898	14	20224002	20424925	15	-0.6131	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.CM.6170	14	20224002	20424925	17	-0.9333	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K2,OR4K5,OR4M1,OR4N2"
TCGA.AA.3854	14	20226768	20348471	9	-0.586	SMALL-LOSS	FOCAL	3	"OR4K2,OR4M1,OR4N2"
TCGA.DM.A1HB	14	20281463	20481344	21	-0.5305	SMALL-LOSS	FOCAL	5	"OR4K1,OR4K15,OR4K2,OR4K5,OR4N2"
TCGA.AA.3516	14	20332570	20417540	6	-0.5808	SMALL-LOSS	FOCAL	3	"OR4K1,OR4K2,OR4K5"
TCGA.AA.A010.01A	14	20757749	20779677	11	-1.0352	SMALL-LOSS	FOCAL	2	"CCNB1IP1,TTC5"
TCGA.AG.4009.01A	14	20760095	20794549	13	-1.0824	SMALL-LOSS	FOCAL	2	"CCNB1IP1,TTC5"
TCGA.AA.A02E.01A	14	20766922	20924033	74	-1.0671	SMALL-LOSS	FOCAL	7	"APEX1,CCNB1IP1,KLHL33,OSGEP,PARP2,TEP1,TTC5"
TCGA.AG.A01N.01A	14	20773970	20811727	6	-0.5215	SMALL-LOSS	FOCAL	2	"CCNB1IP1,TTC5"
TCGA.CK.5914.01A	14	20779677	20825517	18	-1.1037	SMALL-LOSS	FOCAL	2	"CCNB1IP1,PARP2"
TCGA.AA.A02H.01A	14	20813040	20846174	24	-1.0603	SMALL-LOSS	FOCAL	2	"PARP2,TEP1"
TCGA.AA.3681	14	20824180	20824693	4	-1.2005	SMALL-LOSS	FOCAL	1	PARP2
TCGA.AA.A01K.01A	14	20873563	20942900	20	-1.1149	SMALL-LOSS	FOCAL	6	"APEX1,KLHL33,OSGEP,PNP,TEP1,TMEM55B"
TCGA.CK.5914.01A	14	20897669	20928817	15	-1.0683	SMALL-LOSS	FOCAL	4	"APEX1,KLHL33,OSGEP,TMEM55B"
TCGA.AG.4009.01A	14	20915317	20916834	3	-0.5817	SMALL-LOSS	FOCAL	1	OSGEP
TCGA.AG.4009.01A	14	20920095	20978651	16	-1.0207	SMALL-LOSS	FOCAL	5	"APEX1,OSGEP,PNP,RNASE10,TMEM55B"
TCGA.AA.A01Q.01A	14	20924033	20928310	6	-0.622	SMALL-LOSS	FOCAL	2	"APEX1,TMEM55B"
TCGA.A6.6653	14	20958724	20998595	23	-0.8833	SMALL-LOSS	FOCAL	1	RNASE10
TCGA.A6.6653	14	21150107	21202632	22	-0.8106	SMALL-LOSS	FOCAL	2	"ANG,RNASE4"
TCGA.CI.6622	14	21166226	21176088	3	-1.201	SMALL-LOSS	FOCAL	1	RNASE4
TCGA.AA.A010.01A	14	21167519	21215698	4	-1.0733	SMALL-LOSS	FOCAL	2	"EDDM3A,RNASE4"
TCGA.A6.5657	14	21364219	21421087	7	-0.9001	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A015.01A	14	21462646	21486542	14	-0.6533	SMALL-LOSS	FOCAL	3	"METTL17,NDRG2,SLC39A2"
TCGA.AG.3901	14	21463049	21468155	4	-0.9794	SMALL-LOSS	FOCAL	2	"METTL17,SLC39A2"
TCGA.AG.A02G.01A	14	21463272	21553837	43	-0.9225	SMALL-LOSS	FOCAL	8	"ARHGEF40,METTL17,NDRG2,RNASE13,RNASE7,RNASE8,SLC39A2,TPPP2"
TCGA.AA.A00N.01A	14	21486542	21571246	45	-0.9534	SMALL-LOSS	FOCAL	8	"ARHGEF40,NDRG2,RNASE13,RNASE7,RNASE8,TMEM253,TPPP2,ZNF219"
TCGA.AG.3909.01A	14	21486901	21499122	11	-0.8253	SMALL-LOSS	FOCAL	2	"NDRG2,TPPP2"
TCGA.AG.4009.01A	14	21486901	21511550	15	-0.5527	SMALL-LOSS	FOCAL	4	"NDRG2,RNASE13,RNASE7,TPPP2"
TCGA.AG.4009.01A	14	21526032	21561650	24	-1.1159	SMALL-LOSS	FOCAL	4	"ARHGEF40,NDRG2,RNASE8,ZNF219"
TCGA.AF.3914.01A	14	21541184	21546282	7	-1.1374	SMALL-LOSS	FOCAL	1	ARHGEF40
TCGA.AG.A00C.01A	14	21623084	21702064	7	-0.7111	SMALL-LOSS	FOCAL	2	"HNRNPC,OR5AU1"
TCGA.AA.A00A.01A	14	21679354	21792840	4	-0.6143	SMALL-LOSS	FOCAL	2	"HNRNPC,RPGRIP1"
TCGA.AA.A00N.01A	14	21756088	21778718	7	-0.97	SMALL-LOSS	FOCAL	1	RPGRIP1
TCGA.AG.A01N.01A	14	21756088	21780528	9	-1.0916	SMALL-LOSS	FOCAL	1	RPGRIP1
TCGA.CK.5914.01A	14	21756088	21792840	14	-0.677	SMALL-LOSS	FOCAL	1	RPGRIP1
TCGA.AA.A02H.01A	14	21785827	21841442	34	-0.6363	SMALL-LOSS	FOCAL	2	"RPGRIP1,SUPT16H"
TCGA.AG.A01N.01A	14	21827595	21836378	8	-0.9929	SMALL-LOSS	FOCAL	1	SUPT16H
TCGA.AG.3909.01A	14	21899876	21957302	13	-0.7063	SMALL-LOSS	FOCAL	3	"CHD8,RAB2B,TOX4"
TCGA.AA.A02H.01A	14	21899876	21971785	25	-0.8637	SMALL-LOSS	FOCAL	4	"CHD8,METTL3,RAB2B,TOX4"
TCGA.AA.A01F.01A	14	21929303	21956717	11	-0.6816	SMALL-LOSS	FOCAL	2	"RAB2B,TOX4"
TCGA.CK.5914.01A	14	21929303	21960429	14	-0.6201	SMALL-LOSS	FOCAL	2	"RAB2B,TOX4"
TCGA.AA.A00N.01A	14	21929303	21969013	22	-0.5339	SMALL-LOSS	FOCAL	3	"METTL3,RAB2B,TOX4"
TCGA.AA.3850	14	22340126	22404673	54	-0.89505	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	14	22343145	22368996	14	-1.1074	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	14	22447360	22450310	3	-0.9551	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	14	22528763	22587003	10	-0.7203	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2683	14	22581070	22966958	204	-0.8298	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3979	14	22586161	22594445	8	-0.5334	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3560	14	22611311	22613689	11	-0.7313	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3693	14	22611311	22626947	18	-0.6848	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	14	22941505	22955075	13	-0.8417	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	14	22961183	22972533	18	-0.8477	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3667	14	22983222	23094844	63	-0.6982	SMALL-LOSS	FOCAL	2	"ABHD4,DAD1"
TCGA.AA.3875	14	22988570	22999541	4	-0.5694	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	23016408	23079709	10	-0.67	SMALL-LOSS	FOCAL	2	"ABHD4,DAD1"
TCGA.AG.3891.01A	14	23057816	23075291	5	-0.7802	SMALL-LOSS	FOCAL	2	"ABHD4,DAD1"
TCGA.AG.4009.01A	14	23057816	23079709	7	-0.7905	SMALL-LOSS	FOCAL	2	"ABHD4,DAD1"
TCGA.CM.6170	14	23081925	23139778	29	-1.0285	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	14	23091695	23122599	23	-0.7165	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6141	14	23092104	23129206	23	-0.5604	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5657	14	23094844	23099129	4	-0.9252	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A71X	14	23094844	23099618	6	-0.8915	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01N.01A	14	23247950	23353882	21	-0.5822	SMALL-LOSS	FOCAL	5	"LRP10,MMP14,MRPL52,REM2,SLC7A7"
TCGA.AA.A01K.01A	14	23249087	23371384	24	-1.1391	SMALL-LOSS	FOCAL	6	"LRP10,MMP14,MRPL52,RBM23,REM2,SLC7A7"
TCGA.AG.3909.01A	14	23302561	23345881	17	-0.9244	SMALL-LOSS	FOCAL	3	"LRP10,MMP14,MRPL52"
TCGA.AA.A00N.01A	14	23302561	23380502	31	-0.8536	SMALL-LOSS	FOCAL	5	"LRP10,MMP14,MRPL52,RBM23,REM2"
TCGA.AA.A01K.01A	14	23378670	23531586	51	-0.7185	SMALL-LOSS	FOCAL	9	"ACIN1,AJUBA,C14orf93,CDH24,HAUS4,PRMT5,PSMB11,PSMB5,RBM23"
TCGA.AA.A02E.01A	14	23393189	23566826	59	-0.8961	SMALL-LOSS	FOCAL	9	"ACIN1,AJUBA,C14orf119,C14orf93,CDH24,HAUS4,PRMT5,PSMB11,PSMB5"
TCGA.AG.3909.01A	14	23419484	23467584	17	-0.7568	SMALL-LOSS	FOCAL	3	"AJUBA,C14orf93,HAUS4"
TCGA.AA.A00N.01A	14	23419484	23530241	34	-0.7592	SMALL-LOSS	FOCAL	7	"ACIN1,AJUBA,C14orf93,CDH24,HAUS4,PSMB11,PSMB5"
TCGA.CK.5914.01A	14	23421515	23459204	13	-1.0496	SMALL-LOSS	FOCAL	3	"AJUBA,C14orf93,HAUS4"
TCGA.AG.4009.01A	14	23442605	23535099	34	-1.1801	SMALL-LOSS	FOCAL	6	"ACIN1,AJUBA,C14orf93,CDH24,PSMB11,PSMB5"
TCGA.AF.3914.01A	14	23447505	23517137	14	-0.7081	SMALL-LOSS	FOCAL	5	"AJUBA,C14orf93,CDH24,PSMB11,PSMB5"
TCGA.AG.3909.01A	14	23523349	23587742	25	-0.5274	SMALL-LOSS	FOCAL	4	"ACIN1,C14orf119,CDH24,CEBPE"
TCGA.CK.5914.01A	14	23531340	23535099	6	-1.059	SMALL-LOSS	FOCAL	1	ACIN1
TCGA.CK.5914.01A	14	23562624	23569466	6	-1.2675	SMALL-LOSS	FOCAL	2	"ACIN1,C14orf119"
TCGA.AG.A00C.01A	14	23586668	23777983	17	-0.6439	SMALL-LOSS	FOCAL	7	"BCL2L2,BCL2L2-PABPN1,CEBPE,HOMEZ,PPP1R3E,RNF212B,SLC7A8"
TCGA.AG.A01W.01A	14	23601477	23621541	19	-0.6794	SMALL-LOSS	FOCAL	1	SLC7A8
TCGA.AG.A01W.01A	14	23711541	23720508	10	-0.9668	SMALL-LOSS	FOCAL	1	RNF212B
TCGA.AA.A010.01A	14	23727738	23790712	15	-0.5527	SMALL-LOSS	FOCAL	6	"BCL2L2,BCL2L2-PABPN1,HOMEZ,PABPN1,PPP1R3E,RNF212B"
TCGA.AG.3909.01A	14	23777983	23829301	17	-1.2469	SMALL-LOSS	FOCAL	5	"BCL2L2,BCL2L2-PABPN1,EFS,PABPN1,SLC22A17"
TCGA.AA.A010.01A	14	23815827	23857774	31	-0.6947	SMALL-LOSS	FOCAL	5	"CMTM5,EFS,IL25,MYH6,SLC22A17"
TCGA.AA.A00N.01A	14	23815827	23859275	34	-0.5399	SMALL-LOSS	FOCAL	5	"CMTM5,EFS,IL25,MYH6,SLC22A17"
TCGA.AG.3891.01A	14	23816293	23828043	9	-0.6958	SMALL-LOSS	FOCAL	2	"EFS,SLC22A17"
TCGA.AG.4009.01A	14	23816627	23842079	12	-1.1105	SMALL-LOSS	FOCAL	3	"EFS,IL25,SLC22A17"
TCGA.AA.A01Q.01A	14	23826388	23869890	36	-0.6733	SMALL-LOSS	FOCAL	4	"CMTM5,EFS,IL25,MYH6"
TCGA.AG.3909.01A	14	23829726	23863300	26	-0.5992	SMALL-LOSS	FOCAL	4	"CMTM5,EFS,IL25,MYH6"
TCGA.DM.A28C	14	23842016	23844192	5	-0.7386	SMALL-LOSS	FOCAL	1	IL25
TCGA.AA.A00Q.01A	14	23874797	23893941	18	-0.6936	SMALL-LOSS	FOCAL	2	"MYH6,MYH7"
TCGA.AG.A00C.01A	14	23902244	23946382	9	-0.8672	SMALL-LOSS	FOCAL	2	"MYH7,NGDN"
TCGA.AA.A01Q.01A	14	24025945	24035232	14	-0.7574	SMALL-LOSS	FOCAL	2	"AP1G2,THTPA"
TCGA.AG.3909.01A	14	24025945	24035232	14	-0.7386	SMALL-LOSS	FOCAL	2	"AP1G2,THTPA"
TCGA.CK.5914.01A	14	24025945	24044867	19	-0.6993	SMALL-LOSS	FOCAL	3	"AP1G2,JPH4,THTPA"
TCGA.AG.4009.01A	14	24027853	24040959	16	-0.9216	SMALL-LOSS	FOCAL	3	"AP1G2,JPH4,THTPA"
TCGA.CK.6747	14	24033371	24052175	3	-1.1197	SMALL-LOSS	FOCAL	2	"AP1G2,JPH4"
TCGA.AG.A00C.01A	14	24108033	24434909	12	-0.8227	SMALL-LOSS	FOCAL	2	"DHRS2,DHRS4"
TCGA.AG.3891.01A	14	24114303	24505673	16	-0.672	SMALL-LOSS	FOCAL	4	"DHRS2,DHRS4,DHRS4L1,DHRS4L2"
TCGA.AA.3530	14	24179766	24256810	43	-0.7337	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	14	24424206	24524693	25	-1.2707	SMALL-LOSS	FOCAL	4	"DHRS4,DHRS4L1,DHRS4L2,LRRC16B"
TCGA.CK.5914.01A	14	24511822	24524693	13	-1.0159	SMALL-LOSS	FOCAL	2	"DHRS4L1,LRRC16B"
TCGA.AG.4009.01A	14	24531636	24569176	25	-0.7515	SMALL-LOSS	FOCAL	4	"CPNE6,LRRC16B,NRL,PCK2"
TCGA.CK.5914.01A	14	24543197	24544657	4	-1.1855	SMALL-LOSS	FOCAL	1	CPNE6
TCGA.AG.3909.01A	14	24566089	24601408	22	-1.1306	SMALL-LOSS	FOCAL	3	"DCAF11,FITM1,PCK2"
TCGA.AA.A00N.01A	14	24568757	24590000	15	-1.276	SMALL-LOSS	FOCAL	2	"DCAF11,PCK2"
TCGA.AA.A01Q.01A	14	24606109	24615344	11	-1.0636	SMALL-LOSS	FOCAL	3	"EMC9,PSME1,PSME2"
TCGA.AF.3914.01A	14	24606109	24620973	19	-1.1767	SMALL-LOSS	FOCAL	4	"EMC9,PSME1,PSME2,RNF31"
TCGA.AG.4009.01A	14	24606109	24632126	26	-0.8833	SMALL-LOSS	FOCAL	5	"EMC9,IRF9,PSME1,PSME2,RNF31"
TCGA.AG.3909.01A	14	24615690	24657381	40	-0.6873	SMALL-LOSS	FOCAL	5	"IPO4,IRF9,PSME2,REC8,RNF31"
TCGA.AA.A01Q.01A	14	24631306	24635288	7	-0.8765	SMALL-LOSS	FOCAL	1	IRF9
TCGA.AG.3909.01A	14	24702355	24710864	8	-0.9931	SMALL-LOSS	FOCAL	2	"GMPR2,TINF2"
TCGA.AG.4009.01A	14	24734803	24771151	19	-0.6444	SMALL-LOSS	FOCAL	3	"DHRS1,NOP9,RABGGTA"
TCGA.AA.A010.01A	14	24760034	24769152	7	-0.5631	SMALL-LOSS	FOCAL	2	"DHRS1,NOP9"
TCGA.AA.A00N.01A	14	24769672	24788901	18	-1.293	SMALL-LOSS	FOCAL	5	"ADCY4,CIDEB,LTB4R,LTB4R2,NOP9"
TCGA.CK.5914.01A	14	24769672	24788901	18	-0.9491	SMALL-LOSS	FOCAL	5	"ADCY4,CIDEB,LTB4R,LTB4R2,NOP9"
TCGA.AA.A010.01A	14	24769672	24800177	29	-1.1331	SMALL-LOSS	FOCAL	5	"ADCY4,CIDEB,LTB4R,LTB4R2,NOP9"
TCGA.AA.A01Q.01A	14	24769672	24807660	38	-0.8084	SMALL-LOSS	FOCAL	6	"ADCY4,CIDEB,LTB4R,LTB4R2,NOP9,RIPK3"
TCGA.AG.4009.01A	14	24772239	24791230	16	-1.1341	SMALL-LOSS	FOCAL	5	"ADCY4,CIDEB,LTB4R,LTB4R2,NOP9"
TCGA.AA.A00N.01A	14	24791230	24803663	14	-0.6797	SMALL-LOSS	FOCAL	1	ADCY4
TCGA.AG.4009.01A	14	24791786	24884430	37	-0.5739	SMALL-LOSS	FOCAL	4	"ADCY4,NFATC4,NYNRIN,RIPK3"
TCGA.AA.A010.01A	14	24805329	24836213	10	-0.6327	SMALL-LOSS	FOCAL	2	"NFATC4,RIPK3"
TCGA.AA.A010.01A	14	24877053	24911876	21	-1.2415	SMALL-LOSS	FOCAL	4	"CBLN3,KHNYN,NYNRIN,SDR39U1"
TCGA.AG.4009.01A	14	24896958	24911876	14	-1.3164	SMALL-LOSS	FOCAL	3	"CBLN3,KHNYN,SDR39U1"
TCGA.AG.3891.01A	14	25042824	27064567	25	-0.844	SMALL-LOSS	FOCAL	5	"CTSG,GZMB,GZMH,NOVA1,STXBP6"
TCGA.AA.A00L.01A	14	25043549	30396453	44	-0.7144	SMALL-LOSS	FOCAL	7	"CTSG,FOXG1,GZMB,GZMH,NOVA1,PRKD1,STXBP6"
TCGA.AA.3850	14	25189705	27293441	782	-0.53345	SMALL-LOSS	FOCAL	2	"NOVA1,STXBP6"
TCGA.AA.3941	14	25202459	25211220	10	-1.0318	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3979	14	25445361	30666396	1450	-1.05	SMALL-LOSS	FOCAL	4	"FOXG1,NOVA1,PRKD1,STXBP6"
TCGA.AA.3982	14	25626148	29889698	1186	-0.5862	SMALL-LOSS	FOCAL	2	"FOXG1,NOVA1"
TCGA.AA.3844	14	25626386	30728491	1415	-0.5361	SMALL-LOSS	FOCAL	3	"FOXG1,NOVA1,PRKD1"
TCGA.AA.3811	14	25626713	30697646	1407	-0.6106	SMALL-LOSS	FOCAL	3	"FOXG1,NOVA1,PRKD1"
TCGA.CK.5914.01A	14	27064567	29261049	7	-1.0508	SMALL-LOSS	FOCAL	2	"FOXG1,NOVA1"
TCGA.AG.3891.01A	14	27066498	31058538	21	-0.5413	SMALL-LOSS	FOCAL	4	"FOXG1,G2E3,NOVA1,PRKD1"
TCGA.AA.3850	14	27302412	28569783	353	-1.08605	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3949	14	28019233	28037990	7	-1.1355	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6649	14	28545892	28549474	3	-0.743	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	14	28575566	30761737	511	-0.57225	SMALL-LOSS	FOCAL	2	"FOXG1,PRKD1"
TCGA.AA.A010.01A	14	29261049	31058538	21	-0.5248	SMALL-LOSS	FOCAL	2	"G2E3,PRKD1"
TCGA.CK.5914.01A	14	31163931	31371691	22	-0.6532	SMALL-LOSS	FOCAL	3	"COCH,SCFD1,STRN3"
TCGA.AG.3909.01A	14	31346748	31354995	7	-0.7736	SMALL-LOSS	FOCAL	1	COCH
TCGA.AA.A00N.01A	14	31346748	31358774	8	-1.3146	SMALL-LOSS	FOCAL	1	COCH
TCGA.AG.A00C.01A	14	32068479	34993876	46	-0.73	SMALL-LOSS	FOCAL	7	"AKAP6,ARHGAP5,EAPP,EGLN3,NPAS3,NUBPL,SPTSSA"
TCGA.AA.3850	14	32337996	32355800	13	-0.81915	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	14	32343670	32344076	4	-1.2804	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1DB	14	32472088	33233886	293	-0.7005	SMALL-LOSS	FOCAL	2	"AKAP6,ARHGAP5"
TCGA.AA.3982	14	33046387	33217829	71	-0.5296	SMALL-LOSS	FOCAL	1	AKAP6
TCGA.F5.6465	14	33382973	33447141	24	-0.5499	SMALL-LOSS	FOCAL	1	NPAS3
TCGA.EI.6512	14	33536895	33538409	4	-0.6805	SMALL-LOSS	FOCAL	1	NPAS3
TCGA.AA.3556	14	33555132	34025194	327	-0.8048	SMALL-LOSS	FOCAL	1	NPAS3
TCGA.D5.7000	14	33821538	33824392	6	-1.1814	SMALL-LOSS	FOCAL	1	NPAS3
TCGA.AA.3941	14	33972852	34007304	41	-0.5966	SMALL-LOSS	FOCAL	1	NPAS3
TCGA.AG.A01W.01A	14	34055270	34142294	14	-0.6785	SMALL-LOSS	FOCAL	1	NPAS3
TCGA.AA.A00N.01A	14	34247622	35182537	31	-0.6347	SMALL-LOSS	FOCAL	6	"CFL2,EAPP,EGLN3,NPAS3,SNX6,SPTSSA"
TCGA.AG.A01W.01A	14	34647049	34666395	9	-0.6668	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3810.01A	14	34985528	35072511	14	-0.7362	SMALL-LOSS	FOCAL	2	"EAPP,SNX6"
TCGA.AA.A02H.01A	14	34985528	35074780	14	-1.0866	SMALL-LOSS	FOCAL	2	"EAPP,SNX6"
TCGA.CK.5914.01A	14	35002620	35596658	75	-0.5342	SMALL-LOSS	FOCAL	8	"BAZ1A,CFL2,EAPP,FAM177A1,KIAA0391,PPP2R3C,SNX6,SRP54"
TCGA.AA.A02H.01A	14	35077194	35761623	65	-0.5678	SMALL-LOSS	FOCAL	8	"BAZ1A,CFL2,FAM177A1,KIAA0391,PPP2R3C,PSMA6,SNX6,SRP54"
TCGA.AA.A02E.01A	14	35222707	35735894	58	-0.8275	SMALL-LOSS	FOCAL	5	"BAZ1A,FAM177A1,KIAA0391,PPP2R3C,SRP54"
TCGA.AA.A00L.01A	14	35871196	36004649	7	-0.8257	SMALL-LOSS	FOCAL	2	"INSM2,NFKBIA"
TCGA.AA.A00N.01A	14	35871196	36018279	11	-0.9828	SMALL-LOSS	FOCAL	3	"INSM2,NFKBIA,RALGAPA1"
TCGA.AG.3909.01A	14	35871196	36018279	9	-0.7225	SMALL-LOSS	FOCAL	3	"INSM2,NFKBIA,RALGAPA1"
TCGA.AA.3509.01A	14	36231837	36334072	12	-0.5661	SMALL-LOSS	FOCAL	2	"BRMS1L,RALGAPA1"
TCGA.AA.A00N.01A	14	36277889	36339554	11	-0.8789	SMALL-LOSS	FOCAL	2	"BRMS1L,RALGAPA1"
TCGA.CK.5914.01A	14	36300573	36339554	9	-0.7789	SMALL-LOSS	FOCAL	1	BRMS1L
TCGA.AA.3941	14	36488300	36492075	6	-0.9439	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	14	36582419	36704927	44	-0.8027	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	14	36673947	36698142	15	-0.7156	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	14	36768241	37145354	17	-0.5679	SMALL-LOSS	FOCAL	5	"MBIP,NKX2-1,NKX2-8,PAX9,SFTA3"
TCGA.CK.5914.01A	14	36960354	36988143	4	-0.8079	SMALL-LOSS	FOCAL	2	"NKX2-1,SFTA3"
TCGA.AA.A00N.01A	14	36960354	37153898	14	-0.658	SMALL-LOSS	FOCAL	5	"NKX2-1,NKX2-8,PAX9,SFTA3,SLC25A21"
TCGA.AA.3560	14	37234692	37893639	259	-1.1632	SMALL-LOSS	FOCAL	2	"MIPOL1,SLC25A21"
TCGA.AA.A00L.01A	14	38678556	38724288	3	-1.3015	SMALL-LOSS	FOCAL	2	"CLEC14A,SSTR1"
TCGA.AG.3891.01A	14	38678556	38724288	4	-1.241	SMALL-LOSS	FOCAL	2	"CLEC14A,SSTR1"
TCGA.AA.A00N.01A	14	38678556	39514316	10	-0.5799	SMALL-LOSS	FOCAL	3	"CLEC14A,SEC23A,SSTR1"
TCGA.AG.A01W.01A	14	38714973	38720097	6	-0.7035	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	14	38723703	39554923	16	-1.0252	SMALL-LOSS	FOCAL	2	"CLEC14A,SEC23A"
TCGA.AA.3811	14	39001395	39224365	54	-0.6727	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A02H.01A	14	39534061	39649685	32	-0.6949	SMALL-LOSS	FOCAL	4	"GEMIN2,PNN,SEC23A,TRAPPC6B"
TCGA.AG.3909.01A	14	39734524	39764077	8	-1.0737	SMALL-LOSS	FOCAL	1	CTAGE5
TCGA.AG.4009.01A	14	39746111	39773508	10	-1.2655	SMALL-LOSS	FOCAL	1	CTAGE5
TCGA.AA.A010.01A	14	39746111	39783876	13	-1.0778	SMALL-LOSS	FOCAL	1	CTAGE5
TCGA.AG.A00C.01A	14	39769140	44974375	28	-0.7204	SMALL-LOSS	FOCAL	4	"CTAGE5,FBXO33,FSCB,LRFN5"
TCGA.AG.4009.01A	14	39777603	44976386	25	-0.5715	SMALL-LOSS	FOCAL	4	"CTAGE5,FBXO33,FSCB,LRFN5"
TCGA.AA.3930.01A	14	39815060	39871567	7	-0.9657	SMALL-LOSS	FOCAL	2	"CTAGE5,FBXO33"
TCGA.AA.A00L.01A	14	39817900	45432944	25	-0.5369	SMALL-LOSS	FOCAL	7	"C14orf28,CTAGE5,FAM179B,FBXO33,FSCB,KLHL28,LRFN5"
TCGA.AA.3811	14	40133699	41916993	542	-0.7019	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1DB	14	41082915	42247482	320	-0.8602	SMALL-LOSS	FOCAL	1	LRFN5
TCGA.A6.6137	14	41606898	41637814	3	-0.8469	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6704	14	41633384	41653976	3	-1.2308	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3591	14	43064027	43074983	6	-1.1631	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	14	45369607	45398201	5	-1.3129	SMALL-LOSS	FOCAL	2	"C14orf28,KLHL28"
TCGA.AG.A00C.01A	14	45398201	45496465	15	-0.8254	SMALL-LOSS	FOCAL	2	"FAM179B,KLHL28"
TCGA.AG.4009.01A	14	45400498	45535761	21	-0.5158	SMALL-LOSS	FOCAL	2	"FAM179B,KLHL28"
TCGA.AA.A010.01A	14	45521587	45590052	23	-0.6638	SMALL-LOSS	FOCAL	3	"FAM179B,FKBP3,PRPF39"
TCGA.AA.A00N.01A	14	45535761	45624583	33	-0.8091	SMALL-LOSS	FOCAL	4	"FAM179B,FANCM,FKBP3,PRPF39"
TCGA.AG.4009.01A	14	45537610	45565269	5	-1.1481	SMALL-LOSS	FOCAL	2	"FAM179B,PRPF39"
TCGA.AG.4009.01A	14	45566043	45581519	8	-0.6772	SMALL-LOSS	FOCAL	1	PRPF39
TCGA.AG.A00C.01A	14	45639755	47600879	41	-0.8293	SMALL-LOSS	FOCAL	4	"FANCM,MDGA2,MIS18BP1,RPL10L"
TCGA.AA.A02H.01A	14	45665328	45687433	8	-0.9385	SMALL-LOSS	FOCAL	2	"FANCM,MIS18BP1"
TCGA.DM.A28F	14	45683449	45834140	21	-0.6071	SMALL-LOSS	FOCAL	1	MIS18BP1
TCGA.AA.A00N.01A	14	45700307	45715909	7	-0.879	SMALL-LOSS	FOCAL	1	MIS18BP1
TCGA.AG.3909.01A	14	45704978	45715909	5	-0.5588	SMALL-LOSS	FOCAL	1	MIS18BP1
TCGA.F5.6811.01A	14	46190017	49114202	19	-0.7942	SMALL-LOSS	FOCAL	2	"MDGA2,RPL10L"
TCGA.F4.6460	14	46253778	46361343	32	-0.7229	SMALL-LOSS	FOCAL	0	None
TCGA.CM.4748	14	47052582	47384439	75	-0.5373	SMALL-LOSS	FOCAL	2	"MDGA2,RPL10L"
TCGA.AG.4009.01A	14	47120267	50218277	56	-0.6654	SMALL-LOSS	FOCAL	9	"DNAAF2,KLHDC1,LRR1,MDGA2,MGAT2,POLE2,RPL10L,RPL36AL,RPS29"
TCGA.AA.3866	14	47417587	47421399	8	-1.2892	SMALL-LOSS	FOCAL	1	MDGA2
TCGA.AA.3811	14	47421399	49814532	670	-0.5637	SMALL-LOSS	FOCAL	1	MDGA2
TCGA.G4.6317	14	47708285	47716282	4	-0.8583	SMALL-LOSS	FOCAL	1	MDGA2
TCGA.AA.3850	14	47806586	49781186	540	-0.59775	SMALL-LOSS	FOCAL	1	MDGA2
TCGA.AA.A00N.01A	14	48143667	50065688	6	-0.6989	SMALL-LOSS	FOCAL	3	"LRR1,MDGA2,RPS29"
TCGA.A6.3810.01A	14	50050288	50092212	11	-0.6457	SMALL-LOSS	FOCAL	5	"DNAAF2,LRR1,MGAT2,RPL36AL,RPS29"
TCGA.AA.A00N.01A	14	50100598	50150259	16	-1.1286	SMALL-LOSS	FOCAL	2	"DNAAF2,POLE2"
TCGA.CK.5914.01A	14	50100598	50150259	16	-0.5878	SMALL-LOSS	FOCAL	2	"DNAAF2,POLE2"
TCGA.AG.3909.01A	14	50238255	50244860	4	-0.9531	SMALL-LOSS	FOCAL	1	KLHDC2
TCGA.AG.4009.01A	14	50238255	50247377	7	-1.2777	SMALL-LOSS	FOCAL	1	KLHDC2
TCGA.CK.5914.01A	14	50238255	50249531	9	-0.7968	SMALL-LOSS	FOCAL	1	KLHDC2
TCGA.AA.A010.01A	14	50238255	50256164	14	-1.2775	SMALL-LOSS	FOCAL	2	"KLHDC2,NEMF"
TCGA.AA.A00N.01A	14	50238255	50600794	56	-1.097	SMALL-LOSS	FOCAL	5	"ARF6,KLHDC2,NEMF,SOS2,VCPKMT"
TCGA.AG.4009.01A	14	50249033	50272697	13	-0.9389	SMALL-LOSS	FOCAL	2	"KLHDC2,NEMF"
TCGA.AG.3909.01A	14	50280666	50297968	7	-0.9405	SMALL-LOSS	FOCAL	1	NEMF
TCGA.AG.4009.01A	14	50280666	50298705	8	-1.2947	SMALL-LOSS	FOCAL	1	NEMF
TCGA.CK.5914.01A	14	50280666	50596623	34	-0.805	SMALL-LOSS	FOCAL	4	"ARF6,NEMF,SOS2,VCPKMT"
TCGA.AG.3909.01A	14	50579282	50586945	6	-0.9866	SMALL-LOSS	FOCAL	2	"SOS2,VCPKMT"
TCGA.AA.A00N.01A	14	50760783	50886683	33	-0.6673	SMALL-LOSS	FOCAL	4	"ATP5S,CDKL1,L2HGDH,MAP4K5"
TCGA.AG.4009.01A	14	50856785	50877147	5	-1.179	SMALL-LOSS	FOCAL	1	CDKL1
TCGA.AA.3850	14	50880092	50947547	8	-0.57955	SMALL-LOSS	FOCAL	1	MAP4K5
TCGA.AA.3844	14	50925878	50973631	18	-0.7079	SMALL-LOSS	FOCAL	1	MAP4K5
TCGA.AA.3850	14	51188123	51193212	7	-0.75715	SMALL-LOSS	FOCAL	1	NIN
TCGA.AA.A00N.01A	14	51273396	51368538	11	-0.7293	SMALL-LOSS	FOCAL	2	"ABHD12B,NIN"
TCGA.AA.A010.01A	14	51273396	51370049	12	-0.8677	SMALL-LOSS	FOCAL	2	"ABHD12B,NIN"
TCGA.AG.4009.01A	14	51288570	51352256	6	-1.2496	SMALL-LOSS	FOCAL	2	"ABHD12B,NIN"
TCGA.AA.A00N.01A	14	51398342	51410838	4	-1.2649	SMALL-LOSS	FOCAL	1	PYGL
TCGA.F5.6465	14	51804088	52152600	209	-0.5342	SMALL-LOSS	FOCAL	1	FRMD6
TCGA.AA.3941	14	52005923	52012490	6	-1.1545	SMALL-LOSS	FOCAL	1	FRMD6
TCGA.AA.3941	14	52142885	52177588	13	-0.6285	SMALL-LOSS	FOCAL	1	FRMD6
TCGA.AA.3941	14	52419058	52429046	19	-0.9035	SMALL-LOSS	FOCAL	1	GNG2
TCGA.AG.3909.01A	14	52457995	52474501	10	-0.7759	SMALL-LOSS	FOCAL	2	"C14orf166,NID2"
TCGA.AA.A00N.01A	14	52520248	52793912	8	-0.6038	SMALL-LOSS	FOCAL	3	"NID2,PTGDR,PTGER2"
TCGA.AA.3941	14	52557122	52564969	10	-0.8267	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	53145084	53194180	15	-1.217	SMALL-LOSS	FOCAL	2	"ERO1L,PSMC6"
TCGA.CK.5914.01A	14	53174976	53194180	10	-1.0449	SMALL-LOSS	FOCAL	1	PSMC6
TCGA.AG.3909.01A	14	53175442	53194180	9	-1.0149	SMALL-LOSS	FOCAL	1	PSMC6
TCGA.AG.3909.01A	14	53245031	53251164	5	-0.5404	SMALL-LOSS	FOCAL	1	GNPNAT1
TCGA.AG.A00C.01A	14	53325047	53618932	26	-0.8257	SMALL-LOSS	FOCAL	2	"DDHD1,FERMT2"
TCGA.AA.3941	14	53498041	53557746	9	-0.8245	SMALL-LOSS	FOCAL	1	DDHD1
TCGA.AG.4009.01A	14	53618932	54946440	16	-0.8658	SMALL-LOSS	FOCAL	5	"BMP4,CDKN3,CNIH1,DDHD1,GMFB"
TCGA.AG.3909.01A	14	53618932	54950341	20	-0.7715	SMALL-LOSS	FOCAL	5	"BMP4,CDKN3,CNIH1,DDHD1,GMFB"
TCGA.AA.3941	14	53731552	53755448	5	-0.6682	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3807	14	54057942	54889135	301	-0.9131	SMALL-LOSS	FOCAL	2	"BMP4,CDKN3"
TCGA.AZ.5403	14	54624541	54634339	4	-0.6098	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	55218124	55236770	4	-1.3093	SMALL-LOSS	FOCAL	1	SAMD4A
TCGA.AA.A00N.01A	14	55475278	55611782	17	-1.2708	SMALL-LOSS	FOCAL	4	"LGALS3,MAPK1IP1L,SOCS4,WDHD1"
TCGA.AA.3977	14	55855595	55862955	3	-0.9643	SMALL-LOSS	FOCAL	1	ATG14
TCGA.CK.5914.01A	14	55881037	56078750	8	-0.9131	SMALL-LOSS	FOCAL	2	"KTN1,TBPL2"
TCGA.AA.A00N.01A	14	55881037	56083187	9	-0.8622	SMALL-LOSS	FOCAL	2	"KTN1,TBPL2"
TCGA.AG.3891.01A	14	56755104	56763296	3	-1.2044	SMALL-LOSS	FOCAL	1	PELI2
TCGA.AF.2690	14	56944752	56984648	27	-0.9688	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	14	57051633	57052441	2	-0.9905	SMALL-LOSS	FOCAL	1	TMEM260
TCGA.AA.3941	14	57052921	57071003	15	-1.2844	SMALL-LOSS	FOCAL	1	TMEM260
TCGA.A6.6649	14	57054820	57065342	3	-0.9985	SMALL-LOSS	FOCAL	1	TMEM260
TCGA.CK.5914.01A	14	57268402	57272027	3	-0.8078	SMALL-LOSS	FOCAL	1	OTX2
TCGA.AG.3726	14	57627638	57628877	3	-1.2992	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	57735973	57876050	11	-1.0525	SMALL-LOSS	FOCAL	2	"AP5M1,NAA30"
TCGA.AG.4009.01A	14	58598182	58681916	10	-0.9557	SMALL-LOSS	FOCAL	2	"ACTR10,C14orf37"
TCGA.AA.A00N.01A	14	58604706	58690279	11	-0.8032	SMALL-LOSS	FOCAL	2	"ACTR10,C14orf37"
TCGA.AA.3509.01A	14	58605466	58768247	25	-0.647	SMALL-LOSS	FOCAL	4	"ACTR10,ARID4A,C14orf37,PSMA3"
TCGA.A6.3808.01A	14	58674614	58934434	66	-0.8382	SMALL-LOSS	FOCAL	6	"ACTR10,ARID4A,KIAA0586,PSMA3,TIMM9,TOMM20L"
TCGA.AG.4009.01A	14	58686360	58894932	45	-0.6095	SMALL-LOSS	FOCAL	6	"ACTR10,ARID4A,KIAA0586,PSMA3,TIMM9,TOMM20L"
TCGA.AG.3909.01A	14	58766476	58772699	4	-0.7431	SMALL-LOSS	FOCAL	1	ARID4A
TCGA.AG.3909.01A	14	58869357	58877510	5	-0.5304	SMALL-LOSS	FOCAL	2	"TIMM9,TOMM20L"
TCGA.AA.A00N.01A	14	58869357	58878563	6	-0.8111	SMALL-LOSS	FOCAL	2	"TIMM9,TOMM20L"
TCGA.CK.5914.01A	14	59104872	59113969	5	-1.2182	SMALL-LOSS	FOCAL	1	DACT1
TCGA.AG.3909.01A	14	59930438	59945860	5	-1.0987	SMALL-LOSS	FOCAL	2	"GPR135,L3HYPDH"
TCGA.AA.3509.01A	14	60635342	60756473	5	-0.7562	SMALL-LOSS	FOCAL	1	PPM1A
TCGA.AG.3909.01A	14	60944961	61186458	9	-1.076	SMALL-LOSS	FOCAL	4	"C14orf39,SIX1,SIX4,SIX6"
TCGA.F5.6864	14	61798824	63951868	857	-0.5471	SMALL-LOSS	FOCAL	8	"GPHB5,HIF1A,KCNH5,PPP2R5E,PRKCH,RHOJ,SNAPC1,SYT16"
TCGA.AA.A00N.01A	14	62193387	62261618	20	-1.0521	SMALL-LOSS	FOCAL	2	"HIF1A,SNAPC1"
TCGA.AA.3850	14	62529502	63495216	383	-0.63735	SMALL-LOSS	FOCAL	2	"KCNH5,SYT16"
TCGA.AG.A01W.01A	14	62920869	62930245	4	-1.2372	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	14	63678921	63698155	9	-1.01275	SMALL-LOSS	FOCAL	1	RHOJ
TCGA.AA.3982	14	63873754	63880445	3	-0.8749	SMALL-LOSS	FOCAL	1	PPP2R5E
TCGA.CK.5914.01A	14	63881813	64194010	8	-0.5818	SMALL-LOSS	FOCAL	3	"PPP2R5E,SGPP1,WDR89"
TCGA.AA.A00N.01A	14	64486663	64518293	13	-1.144	SMALL-LOSS	FOCAL	1	SYNE2
TCGA.AG.4009.01A	14	64488537	64522625	12	-0.9758	SMALL-LOSS	FOCAL	1	SYNE2
TCGA.CK.5914.01A	14	64489460	64518293	10	-0.7103	SMALL-LOSS	FOCAL	1	SYNE2
TCGA.AG.4009.01A	14	64630071	64669482	11	-1.005	SMALL-LOSS	FOCAL	1	SYNE2
TCGA.AA.A00N.01A	14	64635555	64669482	8	-1.0302	SMALL-LOSS	FOCAL	1	SYNE2
TCGA.AG.3909.01A	14	64641645	64656747	5	-0.8097	SMALL-LOSS	FOCAL	1	SYNE2
TCGA.AG.4009.01A	14	64892710	64916132	12	-0.5556	SMALL-LOSS	FOCAL	2	"MTHFD1,ZBTB25"
TCGA.AG.4009.01A	14	64920421	64988211	8	-1.3062	SMALL-LOSS	FOCAL	4	"AKAP5,MTHFD1,ZBTB1,ZBTB25"
TCGA.AG.3909.01A	14	64935061	65239909	43	-0.5761	SMALL-LOSS	FOCAL	7	"AKAP5,HSPA2,PLEKHG3,PPP1R36,SPTB,ZBTB1,ZBTB25"
TCGA.AA.A010.01A	14	64953590	64998521	7	-1.0281	SMALL-LOSS	FOCAL	2	"ZBTB1,ZBTB25"
TCGA.CK.5914.01A	14	64988211	65216652	34	-0.5948	SMALL-LOSS	FOCAL	5	"HSPA2,PLEKHG3,PPP1R36,SPTB,ZBTB1"
TCGA.AG.4009.01A	14	65199064	65220218	8	-0.8517	SMALL-LOSS	FOCAL	2	"PLEKHG3,SPTB"
TCGA.AG.A00C.01A	14	65233325	65544040	54	-0.7377	SMALL-LOSS	FOCAL	7	"CHURC1,CHURC1-FNTB,FNTB,GPX2,MAX,RAB15,SPTB"
TCGA.AA.A010.01A	14	65390672	65472881	14	-1.0581	SMALL-LOSS	FOCAL	6	"CHURC1,CHURC1-FNTB,FNTB,GPX2,MAX,RAB15"
TCGA.AG.3909.01A	14	65543152	66190813	13	-0.6739	SMALL-LOSS	FOCAL	2	"FUT8,MAX"
TCGA.AA.A00N.01A	14	65550857	66965054	22	-0.8506	SMALL-LOSS	FOCAL	2	"FUT8,MAX"
TCGA.AA.3967.01A	14	66096171	67647492	30	-0.6488	SMALL-LOSS	FOCAL	2	"FUT8,GPHN"
TCGA.AG.A01W.01A	14	66734587	66761576	6	-0.5939	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	14	66862742	66987147	26	-0.77855	SMALL-LOSS	FOCAL	1	GPHN
TCGA.AA.A01Q.01A	14	67243112	67390879	6	-0.6339	SMALL-LOSS	FOCAL	1	GPHN
TCGA.DM.A28C	14	67355638	67525695	19	-0.8579	SMALL-LOSS	FOCAL	1	GPHN
TCGA.AA.3529	14	67385727	67734875	50	-0.5445	SMALL-LOSS	FOCAL	3	"FAM71D,GPHN,MPP5"
TCGA.AG.4009.01A	14	67786900	67812438	8	-1.1176	SMALL-LOSS	FOCAL	2	"ATP6V1D,MPP5"
TCGA.AG.3909.01A	14	67799450	67819619	9	-0.9454	SMALL-LOSS	FOCAL	2	"ATP6V1D,MPP5"
TCGA.CK.5914.01A	14	67799450	67831438	11	-1.0741	SMALL-LOSS	FOCAL	3	"ATP6V1D,EIF2S1,MPP5"
TCGA.AG.4009.01A	14	67814049	67843109	8	-0.7713	SMALL-LOSS	FOCAL	2	"ATP6V1D,EIF2S1"
TCGA.AA.3967.01A	14	68038802	68045201	10	-0.9596	SMALL-LOSS	FOCAL	1	PLEKHH1
TCGA.AG.3909.01A	14	68047618	68087561	10	-0.6245	SMALL-LOSS	FOCAL	3	"ARG2,PIGH,PLEKHH1"
TCGA.AA.A00N.01A	14	68047618	68159106	29	-0.6309	SMALL-LOSS	FOCAL	5	"ARG2,PIGH,PLEKHH1,RDH11,VTI1B"
TCGA.CK.5914.01A	14	68059296	68087561	5	-1.0585	SMALL-LOSS	FOCAL	2	"ARG2,PIGH"
TCGA.AF.5654	14	68642758	69216474	285	-0.6308	SMALL-LOSS	FOCAL	1	RAD51B
TCGA.AG.4009.01A	14	69619455	69787381	9	-0.5739	SMALL-LOSS	FOCAL	3	"DCAF5,EXD2,GALNT16"
TCGA.AG.3909.01A	14	70234837	70244998	7	-1.0517	SMALL-LOSS	FOCAL	2	"SLC10A1,SRSF5"
TCGA.CK.5914.01A	14	70234837	70244998	7	-1.1365	SMALL-LOSS	FOCAL	2	"SLC10A1,SRSF5"
TCGA.CK.5914.01A	14	71057934	71067256	6	-0.7677	SMALL-LOSS	FOCAL	1	MED6
TCGA.AG.A01W.01A	14	71266489	72782505	91	-0.6062	SMALL-LOSS	FOCAL	4	"MAP3K9,PCNX,RGS6,SIPA1L1"
TCGA.AG.A00C.01A	14	71434841	71462411	5	-1.3036	SMALL-LOSS	FOCAL	1	PCNX
TCGA.AG.A00C.01A	14	71476300	73238394	74	-0.7905	SMALL-LOSS	FOCAL	4	"DPF3,PCNX,RGS6,SIPA1L1"
TCGA.AA.3844	14	72426755	72437897	6	-1.059	SMALL-LOSS	FOCAL	1	RGS6
TCGA.AA.3941	14	72426755	72437897	6	-0.5231	SMALL-LOSS	FOCAL	1	RGS6
TCGA.AA.3982	14	72572031	72578650	7	-1.0307	SMALL-LOSS	FOCAL	1	RGS6
TCGA.AG.A01W.01A	14	72892050	73015017	12	-1.0812	SMALL-LOSS	FOCAL	1	RGS6
TCGA.A6.6653	14	73012483	73024002	6	-0.9385	SMALL-LOSS	FOCAL	1	RGS6
TCGA.AA.A00N.01A	14	73360679	73413776	8	-0.8394	SMALL-LOSS	FOCAL	2	"DCAF4,DPF3"
TCGA.AG.3909.01A	14	73360679	73425293	13	-0.5282	SMALL-LOSS	FOCAL	2	"DCAF4,DPF3"
TCGA.CK.5914.01A	14	73490742	73683787	27	-0.719	SMALL-LOSS	FOCAL	3	"PSEN1,RBM25,ZFYVE1"
TCGA.AG.A01W.01A	14	73570437	73597052	9	-0.9751	SMALL-LOSS	FOCAL	1	RBM25
TCGA.AA.A010.01A	14	73614673	73685805	10	-1.0789	SMALL-LOSS	FOCAL	1	PSEN1
TCGA.AG.4009.01A	14	73637458	73673036	6	-1.0196	SMALL-LOSS	FOCAL	1	PSEN1
TCGA.AF.A56K	14	73695929	73729497	23	-0.6346	SMALL-LOSS	FOCAL	1	PAPLN
TCGA.AG.4009.01A	14	73945263	74205234	42	-0.765	SMALL-LOSS	FOCAL	9	"ACOT1,ACOT2,ACOT4,ACOT6,C14orf169,DNAL1,ELMSAN1,HEATR4,PNMA1"
TCGA.A6.3808.01A	14	74004084	74358798	42	-0.8284	SMALL-LOSS	FOCAL	10	"ACOT1,ACOT2,ACOT4,ACOT6,DNAL1,ELMSAN1,HEATR4,PNMA1,PTGR2,ZNF410"
TCGA.CK.5914.01A	14	74040070	74362967	39	-0.734	SMALL-LOSS	FOCAL	8	"ACOT2,ACOT4,ACOT6,DNAL1,ELMSAN1,PNMA1,PTGR2,ZNF410"
TCGA.CK.5914.01A	14	74489571	74516403	7	-1.057	SMALL-LOSS	FOCAL	1	CCDC176
TCGA.AA.A010.01A	14	74874218	74952985	6	-0.6412	SMALL-LOSS	FOCAL	2	"NPC2,SYNDIG1L"
TCGA.AY.6197	14	75108289	75111345	6	-1.1752	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	75349210	75367752	12	-1.2586	SMALL-LOSS	FOCAL	1	DLST
TCGA.AG.4009.01A	14	75349210	75368852	13	-0.931	SMALL-LOSS	FOCAL	1	DLST
TCGA.CK.5914.01A	14	75349210	75373220	14	-0.8389	SMALL-LOSS	FOCAL	2	"DLST,RPS6KL1"
TCGA.AG.3909.01A	14	75349210	75373674	15	-1.0996	SMALL-LOSS	FOCAL	2	"DLST,RPS6KL1"
TCGA.AA.A010.01A	14	75352212	75368852	12	-1.1177	SMALL-LOSS	FOCAL	1	DLST
TCGA.AA.A010.01A	14	75409325	75421807	6	-0.9271	SMALL-LOSS	FOCAL	1	PGF
TCGA.AG.3909.01A	14	75509045	75544154	7	-1.2031	SMALL-LOSS	FOCAL	3	"ACYP1,MLH3,ZC2HC1C"
TCGA.CK.5914.01A	14	75513051	75537245	5	-1.3153	SMALL-LOSS	FOCAL	3	"ACYP1,MLH3,ZC2HC1C"
TCGA.AA.A00N.01A	14	75551225	75898947	32	-0.5651	SMALL-LOSS	FOCAL	4	"FOS,JDP2,NEK9,TMED10"
TCGA.CK.5914.01A	14	75576950	75590702	8	-0.9183	SMALL-LOSS	FOCAL	1	NEK9
TCGA.AG.3909.01A	14	75583886	75602413	7	-0.9015	SMALL-LOSS	FOCAL	2	"NEK9,TMED10"
TCGA.AG.3909.01A	14	75746528	75747855	3	-1.2236	SMALL-LOSS	FOCAL	1	FOS
TCGA.AG.A01W.01A	14	76372257	76396743	8	-1.0418	SMALL-LOSS	FOCAL	1	TTLL5
TCGA.AA.A00N.01A	14	76431891	76455173	6	-0.5571	SMALL-LOSS	FOCAL	2	"IFT43,TGFB3"
TCGA.EI.6883	14	76531472	77254098	301	-0.6659	SMALL-LOSS	FOCAL	5	"ANGEL1,ESRRB,GPATCH2L,IFT43,VASH1"
TCGA.AG.A01W.01A	14	76563627	76847991	50	-0.5305	SMALL-LOSS	FOCAL	2	"ESRRB,GPATCH2L"
TCGA.AG.A01W.01A	14	76984528	76998720	10	-0.9515	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3558	14	77225590	77231767	5	-0.7334	SMALL-LOSS	FOCAL	1	VASH1
TCGA.AA.A00N.01A	14	77229113	77297505	20	-0.7165	SMALL-LOSS	FOCAL	3	"ANGEL1,LRRC74A,VASH1"
TCGA.AG.3909.01A	14	77236260	77297505	18	-0.5247	SMALL-LOSS	FOCAL	3	"ANGEL1,LRRC74A,VASH1"
TCGA.AG.A00C.01A	14	77297505	77333652	11	-0.6451	SMALL-LOSS	FOCAL	1	LRRC74A
TCGA.AG.3909.01A	14	77572002	77579736	3	-1.1267	SMALL-LOSS	FOCAL	1	CIPC
TCGA.AG.3891.01A	14	77685105	77702920	6	-1.1331	SMALL-LOSS	FOCAL	1	TMEM63C
TCGA.AG.A00C.01A	14	77685105	77715607	16	-0.7535	SMALL-LOSS	FOCAL	1	TMEM63C
TCGA.AG.3909.01A	14	77843801	77893872	10	-0.6992	SMALL-LOSS	FOCAL	3	"NOXRED1,SAMD15,VIPAS39"
TCGA.AA.A00N.01A	14	77843801	77895307	12	-0.8926	SMALL-LOSS	FOCAL	3	"NOXRED1,SAMD15,VIPAS39"
TCGA.AG.4009.01A	14	77889026	77895987	5	-0.7804	SMALL-LOSS	FOCAL	2	"NOXRED1,VIPAS39"
TCGA.AG.A00C.01A	14	77915975	78189486	39	-0.6573	SMALL-LOSS	FOCAL	7	"AHSA1,ALKBH1,ISM2,SLIRP,SNW1,SPTLC2,VIPAS39"
TCGA.CK.5914.01A	14	77925921	77934724	7	-1.2179	SMALL-LOSS	FOCAL	1	AHSA1
TCGA.AA.A00N.01A	14	78197284	78288723	13	-0.7166	SMALL-LOSS	FOCAL	3	"ADCK1,C14orf178,SNW1"
TCGA.AG.4009.01A	14	78198781	78227327	8	-0.9678	SMALL-LOSS	FOCAL	2	"C14orf178,SNW1"
TCGA.AG.3909.01A	14	78202218	78221263	5	-0.6558	SMALL-LOSS	FOCAL	1	SNW1
TCGA.EI.6883	14	78557504	79617399	459	-0.6442	SMALL-LOSS	FOCAL	1	NRXN3
TCGA.AA.3941	14	78603139	78608740	9	-0.7397	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	14	78604381	78614216	5	-0.6135	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	14	78776477	88472671	3172	-0.6812	SMALL-LOSS	FOCAL	10	"CEP128,DIO2,FLRT2,GALC,GPR65,GTF2A1,NRXN3,SEL1L,STON2,TSHR"
TCGA.AA.3526	14	79459009	83874052	1441	-0.6434	SMALL-LOSS	FOCAL	7	"CEP128,DIO2,GTF2A1,NRXN3,SEL1L,STON2,TSHR"
TCGA.DM.A28H	14	79997084	80242802	110	-0.6685	SMALL-LOSS	FOCAL	1	NRXN3
TCGA.EI.6883	14	80382374	80545436	52	-0.6283	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4681	14	81007449	81136973	40	-0.8976	SMALL-LOSS	FOCAL	1	CEP128
TCGA.DM.A28F	14	81047973	81261429	59	-0.593	SMALL-LOSS	FOCAL	1	CEP128
TCGA.EI.6883	14	81204319	83821806	855	-0.6965	SMALL-LOSS	FOCAL	5	"CEP128,GTF2A1,SEL1L,STON2,TSHR"
TCGA.4N.A93T	14	81271070	86120333	1589	-0.7692	SMALL-LOSS	FOCAL	6	"CEP128,FLRT2,GTF2A1,SEL1L,STON2,TSHR"
TCGA.CK.5914.01A	14	81362010	81371110	3	-0.5879	SMALL-LOSS	FOCAL	1	CEP128
TCGA.DY.A1DC	14	81522109	82866581	392	-0.6251	SMALL-LOSS	FOCAL	4	"GTF2A1,SEL1L,STON2,TSHR"
TCGA.AG.4009.01A	14	81658841	81682710	6	-0.8832	SMALL-LOSS	FOCAL	1	GTF2A1
TCGA.AA.A00N.01A	14	81663702	81686746	5	-0.9094	SMALL-LOSS	FOCAL	1	GTF2A1
TCGA.CK.5914.01A	14	81682710	81744574	5	-0.6294	SMALL-LOSS	FOCAL	2	"GTF2A1,STON2"
TCGA.AA.3844	14	82395325	88624312	2021	-0.5393	SMALL-LOSS	FOCAL	3	"FLRT2,GALC,GPR65"
TCGA.AA.3850	14	82396740	88560354	2002	-0.70795	SMALL-LOSS	FOCAL	3	"FLRT2,GALC,GPR65"
TCGA.CM.5341	14	83330656	83331261	3	-1.0378	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6586	14	84041840	84046559	3	-1.1212	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6512	14	84452458	84456126	5	-0.6413	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6883	14	85398479	86606478	441	-0.7074	SMALL-LOSS	FOCAL	1	FLRT2
TCGA.AA.3530	14	86480787	88433169	586	-0.744	SMALL-LOSS	FOCAL	1	GALC
TCGA.EI.6883	14	86694341	87009921	145	-0.6844	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6883	14	87115800	87235374	26	-0.6748	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6883	14	87313906	88895749	506	-0.6465	SMALL-LOSS	FOCAL	4	"GALC,GPR65,KCNK10,SPATA7"
TCGA.G4.6322	14	88039896	89523165	449	-0.8644	SMALL-LOSS	FOCAL	8	"EML5,GALC,GPR65,KCNK10,PTPN21,SPATA7,TTC8,ZC3H14"
TCGA.AA.A010.01A	14	88401055	88442683	11	-0.8277	SMALL-LOSS	FOCAL	1	GALC
TCGA.AA.A00N.01A	14	88934429	88962695	10	-1.0774	SMALL-LOSS	FOCAL	1	PTPN21
TCGA.AA.A010.01A	14	88934429	88983425	17	-0.5889	SMALL-LOSS	FOCAL	1	PTPN21
TCGA.AZ.4684.01A	14	89029399	89044302	9	-0.5745	SMALL-LOSS	FOCAL	1	ZC3H14
TCGA.AG.A00C.01A	14	89068221	89202661	43	-0.9181	SMALL-LOSS	FOCAL	2	"EML5,ZC3H14"
TCGA.AA.3967.01A	14	89082438	89220808	38	-0.8895	SMALL-LOSS	FOCAL	1	EML5
TCGA.CK.5914.01A	14	89202661	89210301	4	-0.6746	SMALL-LOSS	FOCAL	1	EML5
TCGA.AG.3909.01A	14	90725430	90738567	10	-0.8976	SMALL-LOSS	FOCAL	1	PSMC1
TCGA.AG.4009.01A	14	90866338	90870951	5	-1.1597	SMALL-LOSS	FOCAL	1	CALM1
TCGA.AA.A01Q.01A	14	90866338	91007665	6	-0.5846	SMALL-LOSS	FOCAL	2	"CALM1,TTC7B"
TCGA.AG.A01W.01A	14	91543741	91657698	24	-0.7649	SMALL-LOSS	FOCAL	1	C14orf159
TCGA.AG.3909.01A	14	91700676	91805572	23	-0.5445	SMALL-LOSS	FOCAL	2	"CCDC88C,GPR68"
TCGA.CK.5914.01A	14	91745530	91883042	27	-0.8011	SMALL-LOSS	FOCAL	1	CCDC88C
TCGA.AG.3909.01A	14	91957018	92058188	7	-0.6006	SMALL-LOSS	FOCAL	2	"CATSPERB,SMEK1"
TCGA.AA.A00N.01A	14	92403283	92413477	4	-0.8249	SMALL-LOSS	FOCAL	1	FBLN5
TCGA.AA.A00N.01A	14	92547258	92604529	16	-0.8034	SMALL-LOSS	FOCAL	3	"ATXN3,CPSF2,NDUFB1"
TCGA.AG.A01W.01A	14	92745882	92762987	10	-1.0302	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	93170587	93693234	58	-0.7389	SMALL-LOSS	FOCAL	8	"C14orf142,CHGA,GOLGA5,ITPK1,LGMN,MOAP1,TMEM251,UBR7"
TCGA.CK.5914.01A	14	93177961	93277848	13	-0.8397	SMALL-LOSS	FOCAL	2	"GOLGA5,LGMN"
TCGA.A6.3808.01A	14	93180103	93708587	53	-1.0729	SMALL-LOSS	FOCAL	9	"BTBD7,C14orf142,CHGA,GOLGA5,ITPK1,LGMN,MOAP1,TMEM251,UBR7"
TCGA.AA.A010.01A	14	93299450	93428664	18	-0.5633	SMALL-LOSS	FOCAL	3	"CHGA,GOLGA5,ITPK1"
TCGA.AA.A01Q.01A	14	93390468	93542852	17	-0.7302	SMALL-LOSS	FOCAL	2	"CHGA,ITPK1"
TCGA.CK.5914.01A	14	93390468	93581360	19	-0.5792	SMALL-LOSS	FOCAL	2	"CHGA,ITPK1"
TCGA.AG.A01W.01A	14	93589049	93598175	6	-0.846	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	14	93676139	93693234	9	-1.0748	SMALL-LOSS	FOCAL	1	UBR7
TCGA.AA.A01Q.01A	14	94203539	94517497	23	-0.6251	SMALL-LOSS	FOCAL	5	"ASB2,DDX24,FAM181A,OTUB2,PRIMA1"
TCGA.AG.A01Y	14	94422345	94422622	3	-0.9916	SMALL-LOSS	FOCAL	1	ASB2
TCGA.AA.3850	14	94627187	94711135	15	-1.02795	SMALL-LOSS	FOCAL	1	PPP4R4
TCGA.AG.A01W.01A	14	94985975	95207372	16	-0.8377	SMALL-LOSS	FOCAL	3	"SERPINA3,SERPINA4,SERPINA5"
TCGA.CI.6622	14	95478035	95479888	4	-1.1811	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	14	95660120	95696359	12	-0.6244	SMALL-LOSS	FOCAL	1	CLMN
TCGA.AG.3909.01A	14	96848603	96887137	7	-1.13	SMALL-LOSS	FOCAL	2	"AK7,GSKIP"
TCGA.CK.5914.01A	14	96848603	96887137	7	-0.8673	SMALL-LOSS	FOCAL	2	"AK7,GSKIP"
TCGA.AG.A00C.01A	14	96987295	99924569	44	-0.7019	SMALL-LOSS	FOCAL	5	"BCL11B,C14orf177,PAPOLA,SETD3,VRK1"
TCGA.AM.5820	14	97644828	97905324	87	-0.5325	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3681	14	98488030	98494078	10	-1.2189	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3831	14	98492842	98494078	3	-1.1185	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	14	99015176	99049574	18	-0.5937	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	14	99549779	99554643	8	-0.5298	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	14	99550451	99559025	7	-0.7696	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	14	99551014	99552212	3	-0.9302	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	99924569	99931990	5	-0.6944	SMALL-LOSS	FOCAL	1	SETD3
TCGA.AA.A010.01A	14	99924569	99973349	14	-0.9748	SMALL-LOSS	FOCAL	2	"CCNK,SETD3"
TCGA.CK.5914.01A	14	99931990	99973349	10	-0.9059	SMALL-LOSS	FOCAL	2	"CCNK,SETD3"
TCGA.AG.3909.01A	14	99958963	100129164	13	-0.9165	SMALL-LOSS	FOCAL	3	"CCDC85C,CCNK,HHIPL1"
TCGA.AG.4009.01A	14	99958963	100192463	25	-1.1089	SMALL-LOSS	FOCAL	4	"CCDC85C,CCNK,CYP46A1,HHIPL1"
TCGA.AA.A01Q.01A	14	100118523	100165743	10	-0.6106	SMALL-LOSS	FOCAL	2	"CYP46A1,HHIPL1"
TCGA.AA.A010.01A	14	100165743	100191673	9	-0.9355	SMALL-LOSS	FOCAL	1	CYP46A1
TCGA.AG.A00C.01A	14	100192463	100705575	36	-0.7057	SMALL-LOSS	FOCAL	5	"CYP46A1,DEGS2,EML1,EVL,YY1"
TCGA.AG.A01W.01A	14	100562039	100575706	7	-1.1079	SMALL-LOSS	FOCAL	1	EVL
TCGA.AA.A010.01A	14	100705575	101377412	49	-1.0209	SMALL-LOSS	FOCAL	8	"BEGAIN,DLK1,RTL1,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.AG.4009.01A	14	100728609	100820737	17	-1.0036	SMALL-LOSS	FOCAL	4	"SLC25A29,SLC25A47,WARS,YY1"
TCGA.AA.3861.01A	14	100820737	102360771	73	-1.0705	SMALL-LOSS	FOCAL	7	"BEGAIN,DIO3,DLK1,PPP2R5C,RTL1,WARS,WDR25"
TCGA.AG.4009.01A	14	100992158	101488339	15	-0.9641	SMALL-LOSS	FOCAL	4	"BEGAIN,DLK1,RTL1,WDR25"
TCGA.AA.A00L.01A	14	101006775	101492321	18	-0.5286	SMALL-LOSS	FOCAL	3	"BEGAIN,DLK1,RTL1"
TCGA.AG.A00C.01A	14	101200458	101507645	21	-0.6672	SMALL-LOSS	FOCAL	2	"DLK1,RTL1"
TCGA.AA.3844	14	101395705	101464983	14	-0.7665	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	14	101509270	101514939	7	-0.7386	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	14	101530716	101543052	10	-0.9223	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6965	14	101559242	101560508	3	-1.241	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	14	101562618	101574511	10	-0.8043	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	14	101766830	101786943	6	-0.5866	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	14	101786873	101885983	14	-0.9786	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	14	102348451	102384131	10	-1.252	SMALL-LOSS	FOCAL	1	PPP2R5C
TCGA.AG.4009.01A	14	102391428	102457817	11	-0.7982	SMALL-LOSS	FOCAL	2	"DYNC1H1,PPP2R5C"
TCGA.AG.A00C.01A	14	102460479	102516356	45	-0.8162	SMALL-LOSS	FOCAL	1	DYNC1H1
TCGA.AA.A01Q.01A	14	102489036	102699987	42	-0.5662	SMALL-LOSS	FOCAL	4	"DYNC1H1,HSP90AA1,MOK,WDR20"
TCGA.CK.5914.01A	14	102508302	102516745	8	-0.6417	SMALL-LOSS	FOCAL	1	DYNC1H1
TCGA.CK.5914.01A	14	102568185	103148212	51	-0.6501	SMALL-LOSS	FOCAL	8	"ANKRD9,CINP,HSP90AA1,MOK,RCOR1,TECPR2,WDR20,ZNF839"
TCGA.AA.A00L.01A	14	102689097	102699987	5	-0.7679	SMALL-LOSS	FOCAL	2	"MOK,WDR20"
TCGA.AG.A01W.01A	14	102941130	103038946	17	-0.6456	SMALL-LOSS	FOCAL	2	"ANKRD9,TECPR2"
TCGA.AG.A01W.01A	14	103095863	103220993	18	-0.6523	SMALL-LOSS	FOCAL	1	RCOR1
TCGA.AG.A01W.01A	14	103314793	103451110	6	-1.102	SMALL-LOSS	FOCAL	3	"AMN,CDC42BPB,TRAF3"
TCGA.CK.5914.01A	14	103336492	103852293	75	-0.8792	SMALL-LOSS	FOCAL	7	"AMN,CDC42BPB,EIF5,EXOC3L4,MARK3,TNFAIP2,TRAF3"
TCGA.AG.3891.01A	14	103369555	103412777	7	-0.8238	SMALL-LOSS	FOCAL	3	"AMN,CDC42BPB,TRAF3"
TCGA.AA.A010.01A	14	103404380	103425946	12	-0.5214	SMALL-LOSS	FOCAL	1	CDC42BPB
TCGA.AG.A00C.01A	14	103405900	103416756	5	-1.0964	SMALL-LOSS	FOCAL	1	CDC42BPB
TCGA.AG.3909.01A	14	103420884	103465855	16	-1.3193	SMALL-LOSS	FOCAL	1	CDC42BPB
TCGA.AA.A00N.01A	14	103449926	103601507	26	-0.5264	SMALL-LOSS	FOCAL	3	"CDC42BPB,EXOC3L4,TNFAIP2"
TCGA.AA.A010.01A	14	103523307	103576319	10	-1.0291	SMALL-LOSS	FOCAL	2	"CDC42BPB,EXOC3L4"
TCGA.AG.4009.01A	14	103573729	103807266	18	-1.0916	SMALL-LOSS	FOCAL	3	"EIF5,EXOC3L4,TNFAIP2"
TCGA.AG.A00C.01A	14	103852293	103958107	15	-0.6796	SMALL-LOSS	FOCAL	1	MARK3
TCGA.AA.A00N.01A	14	103964816	104245030	60	-0.9216	SMALL-LOSS	FOCAL	9	"APOPT1,BAG5,CKB,KLC1,MARK3,PPP1R13B,TRMT61A,XRCC3,ZFYVE21"
TCGA.CK.5914.01A	14	103996294	104441678	65	-0.7627	SMALL-LOSS	FOCAL	10	"APOPT1,BAG5,C14orf2,KLC1,PPP1R13B,RD3L,TDRD9,TRMT61A,XRCC3,ZFYVE21"
TCGA.AG.3909.01A	14	104026168	104223939	41	-0.8886	SMALL-LOSS	FOCAL	6	"APOPT1,BAG5,KLC1,PPP1R13B,XRCC3,ZFYVE21"
TCGA.AG.A00C.01A	14	104441678	104518281	22	-0.7287	SMALL-LOSS	FOCAL	1	TDRD9
TCGA.AA.A010.01A	14	105061378	105190577	23	-0.9995	SMALL-LOSS	FOCAL	3	"ADSSL1,INF2,TMEM179"
TCGA.AA.A01Q.01A	14	105201310	105521679	33	-0.5262	SMALL-LOSS	FOCAL	10	"ADSSL1,AHNAK2,AKT1,C14orf79,CDCA4,CEP170B,GPR132,PLD4,SIVA1,ZBTB42"
TCGA.AA.A010.01A	14	105219490	105236617	5	-0.5643	SMALL-LOSS	FOCAL	2	"AKT1,SIVA1"
TCGA.AA.A010.01A	14	105349433	105355928	7	-0.9561	SMALL-LOSS	FOCAL	1	CEP170B
TCGA.AA.A010.01A	14	105404363	105406333	3	-1.1331	SMALL-LOSS	FOCAL	1	AHNAK2
TCGA.AG.A00C.01A	14	105406333	105421768	21	-0.7675	SMALL-LOSS	FOCAL	1	AHNAK2
TCGA.AA.A010.01A	14	105408879	105418173	17	-0.7013	SMALL-LOSS	FOCAL	1	AHNAK2
TCGA.AA.A010.01A	14	105419778	105423698	5	-1.2499	SMALL-LOSS	FOCAL	1	AHNAK2
TCGA.AA.A00N.01A	14	105692394	105930701	45	-0.6697	SMALL-LOSS	FOCAL	5	"BRF1,BTBD6,MTA1,PACS2,TEX22"
TCGA.AA.A010.01A	14	105963639	106209077	28	-0.8596	SMALL-LOSS	FOCAL	2	"C14orf80,TMEM121"
TCGA.AA.3967.01A	14	106053257	106322004	36	-1.0074	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	14	106066422	106350648	41	-0.548	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A00C.01A	14	106090762	107282751	97	-0.818	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	14	106173518	106304651	14	-0.6493	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3598	14	106194762	107285436	76	-1.1574	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6881	14	106197114	107285436	75	-0.7999	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	14	106494458	107282751	52	-1.1554	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	14	106733171	107282751	37	-0.6196	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A02K.01A	14	106791334	106816051	4	-1.3051	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	14	106845283	106926538	6	-1.0673	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	14	106845283	106926538	6	-0.634	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	14	107048770	107282751	16	-0.5395	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3728	14	107160324	107176212	3	-1.0142	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01Y	14	107160324	107176212	3	-0.7595	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3883	15	20143408	20172594	3	-1.1039	SMALL-LOSS	FOCAL	0	None
TCGA.AF.A56N	15	20143408	20192010	6	-0.6568	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2678	15	20143408	20550685	8	-0.8541	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	15	20143408	20556429	9	-0.7624	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3693	15	20143408	22410342	14	-0.7737	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.DC.6683	15	20143408	22410342	14	-0.791	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.3831	15	20143408	22422347	15	-0.5967	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.NH.A6GB	15	20143408	22422347	15	-0.5776	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.CI.6624	15	20143408	22560361	17	-1.1086	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.F4.6806	15	20143408	22560361	15	-0.8205	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.A6.6138	15	20143408	22582901	18	-1.136	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.3532	15	20143408	22582901	18	-0.7658	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.3952	15	20143408	22582901	16	-0.6606	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AG.3584	15	20143408	22582901	18	-0.5184	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.CK.6746	15	20143408	22582901	14	-0.5786	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.DY.A1DF	15	20143408	22582901	18	-0.9238	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.EI.7002	15	20143408	22582901	18	-0.6896	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AY.6196	15	20143408	22765682	19	-0.5349	SMALL-LOSS	FOCAL	8	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.D5.6534	15	20143408	22766684	19	-0.676	SMALL-LOSS	FOCAL	8	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.A6.2681	15	20143650	22410342	13	-1.1866	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AA.A01Z	15	20143650	22582901	17	-0.7123	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AH.6644	15	20143650	22582901	17	-0.7883	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.CA.6717	15	20143650	22765682	15	-0.6417	SMALL-LOSS	FOCAL	8	"GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.SS.A7HO	15	20549877	22560361	11	-1.2554	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.NH.A8F7	15	20549877	22582901	9	-1.1409	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AH.6903	15	20550685	22582901	11	-0.8709	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AF.2689	15	20577684	22582901	8	-0.9936	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AG.3906.01A	15	20588543	20659156	11	-0.656	SMALL-LOSS	FOCAL	0	None
TCGA.CK.4948.01B	15	20588543	22413660	16	-1.1841	SMALL-LOSS	FOCAL	6	"GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3"
TCGA.AG.A02X.01A	15	20588543	22992988	60	-0.7588	SMALL-LOSS	FOCAL	10	"CYFIP1,GOLGA6L1,GOLGA6L22,GOLGA6L6,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.3693	15	22765682	24669744	408	-0.7087	SMALL-LOSS	FOCAL	9	"CYFIP1,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,TUBGCP5"
TCGA.CM.5862	15	22784066	23226253	84	-1.0445	SMALL-LOSS	FOCAL	4	"CYFIP1,NIPA1,NIPA2,TUBGCP5"
TCGA.CK.5914.01A	15	22835844	22850870	9	-0.8074	SMALL-LOSS	FOCAL	1	TUBGCP5
TCGA.AA.A010.01A	15	22853687	22873144	11	-0.7554	SMALL-LOSS	FOCAL	1	TUBGCP5
TCGA.AA.A00N.01A	15	22853687	23931981	55	-0.5317	SMALL-LOSS	FOCAL	9	"CYFIP1,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,TUBGCP5"
TCGA.CK.5914.01A	15	22872347	24928543	52	-0.8059	SMALL-LOSS	FOCAL	10	"CYFIP1,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,TUBGCP5"
TCGA.AG.A023.01A	15	22928080	22992988	21	-1.294	SMALL-LOSS	FOCAL	1	CYFIP1
TCGA.AG.4009.01A	15	23810898	24924458	6	-1.0913	SMALL-LOSS	FOCAL	4	"MAGEL2,MKRN3,NDN,NPAP1"
TCGA.AA.A010.01A	15	23889123	24928543	10	-0.8702	SMALL-LOSS	FOCAL	3	"MAGEL2,NDN,NPAP1"
TCGA.DC.6683	15	24372653	24738238	50	-0.6487	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6138	15	24382442	24397561	3	-1.319	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.5403	15	24397561	24454385	11	-1.0632	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	15	24397561	24472001	22	-0.8521	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A0XA	15	24788340	25380526	180	-0.7053	SMALL-LOSS	FOCAL	3	"NPAP1,SNRPN,SNURF"
TCGA.AG.3906.01A	15	24920966	26866422	46	-0.8405	SMALL-LOSS	FOCAL	6	"ATP10A,GABRB3,NPAP1,SNRPN,SNURF,UBE3A"
TCGA.AA.3989	15	25385656	25391003	5	-1.1217	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5656	15	25433304	26617444	505	-0.7734	SMALL-LOSS	FOCAL	2	"ATP10A,UBE3A"
TCGA.CM.5348	15	25622395	25825752	91	-0.5501	SMALL-LOSS	FOCAL	1	UBE3A
TCGA.EI.6506	15	25697538	25715675	15	-0.8584	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A0XA	15	26227824	26766670	234	-0.7379	SMALL-LOSS	FOCAL	0	None
TCGA.A6.5656	15	26719370	26990650	93	-0.807	SMALL-LOSS	FOCAL	1	GABRB3
TCGA.AG.3906.01A	15	27159894	28397794	59	-0.753	SMALL-LOSS	FOCAL	4	"GABRA5,GABRG3,HERC2,OCA2"
TCGA.A6.5656	15	27569622	29529752	435	-0.7776	SMALL-LOSS	FOCAL	6	"APBA2,FAM189A1,GABRG3,GOLGA8M,HERC2,OCA2"
TCGA.AA.3532	15	27890682	28030157	61	-0.6886	SMALL-LOSS	FOCAL	1	OCA2
TCGA.A6.3808.01A	15	28269932	29429189	100	-1.0236	SMALL-LOSS	FOCAL	5	"APBA2,FAM189A1,GOLGA8M,HERC2,OCA2"
TCGA.AG.3891.01A	15	28326763	28362152	8	-0.8133	SMALL-LOSS	FOCAL	2	"HERC2,OCA2"
TCGA.AG.4009.01A	15	28326763	28366447	9	-0.6771	SMALL-LOSS	FOCAL	2	"HERC2,OCA2"
TCGA.AG.3909.01A	15	28375267	28483765	47	-0.8652	SMALL-LOSS	FOCAL	1	HERC2
TCGA.AG.3906.01A	15	28408208	28493676	38	-1.1379	SMALL-LOSS	FOCAL	1	HERC2
TCGA.AA.A00N.01A	15	28483765	28508015	9	-0.9952	SMALL-LOSS	FOCAL	1	HERC2
TCGA.AG.3909.01A	15	28491000	28515812	12	-1.3037	SMALL-LOSS	FOCAL	1	HERC2
TCGA.AA.A00N.01A	15	29367067	29420929	15	-0.7858	SMALL-LOSS	FOCAL	2	"APBA2,FAM189A1"
TCGA.A6.5656	15	29684657	30369913	218	-0.7692	SMALL-LOSS	FOCAL	2	"FAM189A1,TJP1"
TCGA.AA.A00N.01A	15	30663248	31214410	17	-1.2343	SMALL-LOSS	FOCAL	5	"ARHGAP11B,CHRFAM7A,FAN1,GOLGA8H,GOLGA8R"
TCGA.AA.3862.01A	15	30927673	32403952	70	-0.6172	SMALL-LOSS	FOCAL	8	"ARHGAP11B,CHRNA7,FAN1,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.CK.6746	15	30930499	30960780	6	-1.0178	SMALL-LOSS	FOCAL	1	ARHGAP11B
TCGA.EI.6511	15	30930499	31909134	307	-0.5662	SMALL-LOSS	FOCAL	7	"ARHGAP11B,FAN1,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.AA.3502	15	30930499	32511554	467	-0.8643	SMALL-LOSS	FOCAL	8	"ARHGAP11B,CHRNA7,FAN1,KLF13,LOC283710,MTMR10,OTUD7A,TRPM1"
TCGA.AG.3909.01A	15	31217283	31229275	6	-0.9424	SMALL-LOSS	FOCAL	1	FAN1
TCGA.AG.3909.01A	15	32323084	32928428	19	-1.0271	SMALL-LOSS	FOCAL	5	"ARHGAP11A,CHRNA7,GOLGA8K,GOLGA8N,GOLGA8O"
TCGA.A6.3808.01A	15	32393492	32928428	19	-1.0525	SMALL-LOSS	FOCAL	5	"ARHGAP11A,CHRNA7,GOLGA8K,GOLGA8N,GOLGA8O"
TCGA.AA.3977	15	33287880	33303404	6	-0.6209	SMALL-LOSS	FOCAL	1	FMN1
TCGA.AA.3977	15	33395678	33395916	3	-1.1196	SMALL-LOSS	FOCAL	1	FMN1
TCGA.AA.3844	15	33395678	33403150	10	-1.319	SMALL-LOSS	FOCAL	1	FMN1
TCGA.AA.3844	15	33783210	33795709	7	-0.7952	SMALL-LOSS	FOCAL	1	RYR3
TCGA.AA.3844	15	33830009	33836629	4	-1.2946	SMALL-LOSS	FOCAL	1	RYR3
TCGA.AG.A015.01A	15	34119345	34127118	3	-1.0208	SMALL-LOSS	FOCAL	1	RYR3
TCGA.AG.3906.01A	15	34137044	34638152	68	-0.5302	SMALL-LOSS	FOCAL	10	"AVEN,CHRM5,EMC4,EMC7,KATNBL1,NOP10,NUTM1,PGBD4,RYR3,SLC12A6"
TCGA.AG.4009.01A	15	34567482	34645889	9	-0.5933	SMALL-LOSS	FOCAL	3	"NOP10,NUTM1,SLC12A6"
TCGA.AA.A00N.01A	15	34567482	35085405	34	-0.672	SMALL-LOSS	FOCAL	8	"ACTC1,GJD2,GOLGA8A,GOLGA8B,LPCAT4,NOP10,NUTM1,SLC12A6"
TCGA.AA.A010.01A	15	34610714	34640151	6	-1.2869	SMALL-LOSS	FOCAL	3	"NOP10,NUTM1,SLC12A6"
TCGA.AF.3914.01A	15	34635147	34653552	13	-0.6894	SMALL-LOSS	FOCAL	3	"LPCAT4,NOP10,NUTM1"
TCGA.AG.4009.01A	15	34646605	35085405	23	-0.8143	SMALL-LOSS	FOCAL	6	"ACTC1,GJD2,GOLGA8A,GOLGA8B,LPCAT4,NUTM1"
TCGA.AG.3906.01A	15	34673675	35212496	34	-0.7436	SMALL-LOSS	FOCAL	5	"ACTC1,AQR,GJD2,GOLGA8A,GOLGA8B"
TCGA.D5.6923	15	34763615	34780906	4	-0.9235	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	15	35176687	35274918	28	-0.7812	SMALL-LOSS	FOCAL	2	"AQR,ZNF770"
TCGA.AG.4009.01A	15	35219185	35240415	9	-0.8359	SMALL-LOSS	FOCAL	1	AQR
TCGA.AA.A010.01A	15	35219185	35274918	15	-0.6372	SMALL-LOSS	FOCAL	2	"AQR,ZNF770"
TCGA.AA.A00N.01A	15	35222419	35274918	14	-1.0594	SMALL-LOSS	FOCAL	2	"AQR,ZNF770"
TCGA.AF.3914.01A	15	35233068	35245003	5	-1.0089	SMALL-LOSS	FOCAL	1	AQR
TCGA.AG.3906.01A	15	35261680	37375924	30	-0.6535	SMALL-LOSS	FOCAL	5	"AQR,C15orf41,DPH6,MEIS2,ZNF770"
TCGA.AA.3982	15	35398922	39598015	1556	-0.5335	SMALL-LOSS	FOCAL	9	"C15orf41,C15orf53,C15orf54,DPH6,FAM98B,MEIS2,RASGRP1,SPRED1,TMCO5A"
TCGA.AA.A01F.01A	15	35702990	38233825	24	-0.5678	SMALL-LOSS	FOCAL	4	"C15orf41,DPH6,MEIS2,TMCO5A"
TCGA.AA.A01Z	15	36649319	37711775	400	-0.8473	SMALL-LOSS	FOCAL	2	"C15orf41,MEIS2"
TCGA.AA.A00N.01A	15	37100475	37391575	14	-0.8363	SMALL-LOSS	FOCAL	2	"C15orf41,MEIS2"
TCGA.AG.4009.01A	15	37375924	37391575	7	-0.8719	SMALL-LOSS	FOCAL	1	MEIS2
TCGA.AF.3914.01A	15	37385735	37391575	6	-1.1161	SMALL-LOSS	FOCAL	1	MEIS2
TCGA.CK.5914.01A	15	37385735	37391575	6	-0.9019	SMALL-LOSS	FOCAL	1	MEIS2
TCGA.AG.3906.01A	15	38239779	40226365	65	-0.678	SMALL-LOSS	FOCAL	10	"C15orf53,C15orf54,EIF2AK4,FAM98B,FSIP1,GPR176,RASGRP1,SPRED1,THBS1,TMCO5A"
TCGA.AA.A01Z	15	38457023	38980254	170	-0.6725	SMALL-LOSS	FOCAL	3	"FAM98B,RASGRP1,SPRED1"
TCGA.AA.A00N.01A	15	39544329	40397996	79	-0.6405	SMALL-LOSS	FOCAL	7	"BMF,C15orf54,EIF2AK4,FSIP1,GPR176,SRP14,THBS1"
TCGA.AA.3941	15	39770348	39782735	7	-0.7259	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	15	39873993	40397996	77	-0.8488	SMALL-LOSS	FOCAL	6	"BMF,EIF2AK4,FSIP1,GPR176,SRP14,THBS1"
TCGA.AA.A010.01A	15	40231684	40259538	8	-0.7579	SMALL-LOSS	FOCAL	1	EIF2AK4
TCGA.AG.3906.01A	15	40284919	40568081	59	-0.5958	SMALL-LOSS	FOCAL	6	"BMF,BUB1B,C15orf56,EIF2AK4,PAK6,SRP14"
TCGA.AA.A00N.01A	15	40502259	40675377	53	-0.7004	SMALL-LOSS	FOCAL	10	"ANKRD63,BUB1B,C15orf52,C15orf56,DISP2,INAFM2,KNSTRN,PAK6,PHGR1,PLCB2"
TCGA.AA.A010.01A	15	40556960	40568081	7	-1.2104	SMALL-LOSS	FOCAL	1	PAK6
TCGA.AG.3909.01A	15	40556960	40655874	36	-0.773	SMALL-LOSS	FOCAL	7	"ANKRD63,C15orf52,DISP2,INAFM2,PAK6,PHGR1,PLCB2"
TCGA.AG.4009.01A	15	40565018	40661002	39	-0.7555	SMALL-LOSS	FOCAL	7	"ANKRD63,C15orf52,DISP2,INAFM2,PAK6,PHGR1,PLCB2"
TCGA.AA.A010.01A	15	40675017	40708225	20	-0.9429	SMALL-LOSS	FOCAL	2	"IVD,KNSTRN"
TCGA.AG.3909.01A	15	40697981	40763401	18	-0.9792	SMALL-LOSS	FOCAL	3	"BAHD1,CHST14,IVD"
TCGA.AA.A00N.01A	15	40697981	40854933	21	-0.6527	SMALL-LOSS	FOCAL	4	"BAHD1,C15orf57,CHST14,IVD"
TCGA.AA.A01Q.01A	15	40750636	40763401	7	-0.9782	SMALL-LOSS	FOCAL	2	"BAHD1,CHST14"
TCGA.AG.4009.01A	15	40750636	40763401	7	-0.9235	SMALL-LOSS	FOCAL	2	"BAHD1,CHST14"
TCGA.AG.3909.01A	15	40846158	40897227	9	-0.7011	SMALL-LOSS	FOCAL	3	"C15orf57,CASC5,RPUSD2"
TCGA.AG.3906.01A	15	40846158	40920221	17	-0.5505	SMALL-LOSS	FOCAL	3	"C15orf57,CASC5,RPUSD2"
TCGA.AA.3509.01A	15	40895046	41001178	29	-0.6361	SMALL-LOSS	FOCAL	2	"CASC5,RAD51"
TCGA.A6.3808.01A	15	40898524	41030130	36	-1.0503	SMALL-LOSS	FOCAL	3	"CASC5,RAD51,RMDN3"
TCGA.AZ.4684.01A	15	40920756	41020882	20	-0.9672	SMALL-LOSS	FOCAL	2	"CASC5,RAD51"
TCGA.AG.A015.01A	15	40944156	40949223	3	-0.6973	SMALL-LOSS	FOCAL	1	CASC5
TCGA.AG.3909.01A	15	40951488	41067696	30	-0.8407	SMALL-LOSS	FOCAL	6	"C15orf62,CASC5,DNAJC17,GCHFR,RAD51,RMDN3"
TCGA.AA.A00N.01A	15	41010964	41072059	31	-0.5538	SMALL-LOSS	FOCAL	5	"C15orf62,DNAJC17,GCHFR,RAD51,RMDN3"
TCGA.AG.3906.01A	15	41036197	41099508	18	-0.6267	SMALL-LOSS	FOCAL	5	"C15orf62,DNAJC17,GCHFR,RMDN3,ZFYVE19"
TCGA.AA.A010.01A	15	41120553	41148931	8	-0.8869	SMALL-LOSS	FOCAL	2	"PPP1R14D,SPINT1"
TCGA.AG.3909.01A	15	41136704	41247522	25	-1.0989	SMALL-LOSS	FOCAL	5	"CHAC1,DLL4,RHOV,SPINT1,VPS18"
TCGA.AA.A01Q.01A	15	41148449	41247522	15	-0.5259	SMALL-LOSS	FOCAL	5	"CHAC1,DLL4,RHOV,SPINT1,VPS18"
TCGA.CK.5914.01A	15	41165214	41247522	21	-0.6594	SMALL-LOSS	FOCAL	4	"CHAC1,DLL4,RHOV,VPS18"
TCGA.AZ.4684.01A	15	41342108	41785576	73	-0.9374	SMALL-LOSS	FOCAL	7	"CHP1,EXD1,INO80,NDUFAF1,NUSAP1,OIP5,RTF1"
TCGA.AA.A010.01A	15	41384193	41388349	4	-1.0792	SMALL-LOSS	FOCAL	1	INO80
TCGA.A6.3808.01A	15	41387735	41815405	80	-1.1722	SMALL-LOSS	FOCAL	10	"CHP1,EXD1,INO80,ITPKA,LTK,NDUFAF1,NUSAP1,OIP5,RPAP1,RTF1"
TCGA.AG.3909.01A	15	41562689	41625105	9	-1.2881	SMALL-LOSS	FOCAL	3	"CHP1,NUSAP1,OIP5"
TCGA.AA.A00N.01A	15	41562689	41801178	54	-1.0705	SMALL-LOSS	FOCAL	7	"CHP1,ITPKA,LTK,NDUFAF1,NUSAP1,OIP5,RTF1"
TCGA.CK.5914.01A	15	41571459	41624066	5	-1.0782	SMALL-LOSS	FOCAL	2	"CHP1,OIP5"
TCGA.AG.4009.01A	15	41601912	41624066	4	-0.5947	SMALL-LOSS	FOCAL	1	OIP5
TCGA.AF.3914.01A	15	41643169	41870124	78	-0.5211	SMALL-LOSS	FOCAL	7	"ITPKA,LTK,NDUFAF1,NUSAP1,RPAP1,RTF1,TYRO3"
TCGA.AG.4009.01A	15	41650310	41688646	8	-0.6375	SMALL-LOSS	FOCAL	2	"NDUFAF1,NUSAP1"
TCGA.CK.5914.01A	15	41667859	41709267	8	-1.2869	SMALL-LOSS	FOCAL	2	"NDUFAF1,NUSAP1"
TCGA.AG.3909.01A	15	41672236	41688646	5	-0.8618	SMALL-LOSS	FOCAL	2	"NDUFAF1,NUSAP1"
TCGA.AG.3909.01A	15	41762424	41772762	11	-0.995	SMALL-LOSS	FOCAL	1	RTF1
TCGA.CK.5914.01A	15	41767670	41809783	27	-0.5655	SMALL-LOSS	FOCAL	4	"ITPKA,LTK,RPAP1,RTF1"
TCGA.AG.4009.01A	15	41796526	41800260	6	-1.092	SMALL-LOSS	FOCAL	1	LTK
TCGA.AG.4009.01A	15	41853318	41870124	17	-0.8052	SMALL-LOSS	FOCAL	1	TYRO3
TCGA.AG.3909.01A	15	41854699	41961066	16	-0.6399	SMALL-LOSS	FOCAL	2	"MGA,TYRO3"
TCGA.AG.A01W.01A	15	41871772	41880934	12	-0.6938	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	15	42046583	42067423	9	-0.8088	SMALL-LOSS	FOCAL	2	"MAPKBP1,MGA"
TCGA.AG.3909.01A	15	42112988	42137807	22	-0.6465	SMALL-LOSS	FOCAL	4	"JMJD7,JMJD7-PLA2G4B,MAPKBP1,PLA2G4B"
TCGA.AA.A01Q.01A	15	42138384	42139487	3	-0.9152	SMALL-LOSS	FOCAL	2	"JMJD7-PLA2G4B,PLA2G4B"
TCGA.AG.A02X.01A	15	42373148	42436641	15	-1.1054	SMALL-LOSS	FOCAL	2	"PLA2G4D,PLA2G4F"
TCGA.AG.A00C.01A	15	42434689	42454512	18	-0.5861	SMALL-LOSS	FOCAL	2	"PLA2G4F,VPS39"
TCGA.AA.3941	15	42579109	42584060	5	-0.9553	SMALL-LOSS	FOCAL	1	GANC
TCGA.AA.3872	15	42579947	42581581	3	-0.6202	SMALL-LOSS	FOCAL	1	GANC
TCGA.AG.3909.01A	15	42803984	42823557	7	-0.6288	SMALL-LOSS	FOCAL	1	SNAP23
TCGA.AA.A00N.01A	15	42803984	42841026	12	-0.6388	SMALL-LOSS	FOCAL	3	"HAUS2,LRRC57,SNAP23"
TCGA.CK.5914.01A	15	42803984	43028503	37	-0.5479	SMALL-LOSS	FOCAL	5	"CDAN1,HAUS2,LRRC57,SNAP23,STARD9"
TCGA.AA.A010.01A	15	42850351	43069182	30	-0.5426	SMALL-LOSS	FOCAL	4	"CDAN1,HAUS2,STARD9,TTBK2"
TCGA.AG.4009.01A	15	42855937	43044175	23	-0.5522	SMALL-LOSS	FOCAL	4	"CDAN1,HAUS2,STARD9,TTBK2"
TCGA.AG.3909.01A	15	43016642	43262685	42	-0.524	SMALL-LOSS	FOCAL	3	"CDAN1,TTBK2,UBR1"
TCGA.AF.3914.01A	15	43021697	43044175	14	-1.0124	SMALL-LOSS	FOCAL	2	"CDAN1,TTBK2"
TCGA.CK.5914.01A	15	43268867	43277016	4	-0.618	SMALL-LOSS	FOCAL	1	UBR1
TCGA.AA.A00N.01A	15	43277016	43282172	3	-1.1543	SMALL-LOSS	FOCAL	1	UBR1
TCGA.AA.A010.01A	15	43277016	43360058	31	-0.6341	SMALL-LOSS	FOCAL	1	UBR1
TCGA.AG.4009.01A	15	43280979	43317507	12	-1.0307	SMALL-LOSS	FOCAL	1	UBR1
TCGA.AG.3909.01A	15	43316980	43398079	25	-0.7472	SMALL-LOSS	FOCAL	1	UBR1
TCGA.AA.A00N.01A	15	43322115	43398079	21	-0.5623	SMALL-LOSS	FOCAL	1	UBR1
TCGA.CK.5914.01A	15	43360058	43489463	31	-0.9197	SMALL-LOSS	FOCAL	4	"CCNDBP1,EPB42,TMEM62,UBR1"
TCGA.AA.A010.01A	15	43430758	43461737	8	-0.6776	SMALL-LOSS	FOCAL	1	TMEM62
TCGA.AG.4009.01A	15	43438642	43481357	12	-0.8984	SMALL-LOSS	FOCAL	2	"CCNDBP1,TMEM62"
TCGA.AA.A00N.01A	15	43493990	43533032	18	-0.6326	SMALL-LOSS	FOCAL	2	"EPB42,TGM5"
TCGA.CK.5914.01A	15	43576965	43672223	30	-0.5335	SMALL-LOSS	FOCAL	5	"ADAL,LCMT2,TGM7,TUBGCP4,ZSCAN29"
TCGA.AA.A00N.01A	15	43576965	43677952	32	-0.9587	SMALL-LOSS	FOCAL	5	"ADAL,LCMT2,TGM7,TUBGCP4,ZSCAN29"
TCGA.AG.3909.01A	15	43576965	43678367	31	-1.1694	SMALL-LOSS	FOCAL	5	"ADAL,LCMT2,TGM7,TUBGCP4,ZSCAN29"
TCGA.AG.3909.01A	15	43733655	43748598	6	-0.6206	SMALL-LOSS	FOCAL	1	TP53BP1
TCGA.CK.5914.01A	15	43739539	43818950	22	-0.9143	SMALL-LOSS	FOCAL	2	"MAP1A,TP53BP1"
TCGA.AG.3909.01A	15	43785137	43931794	42	-0.714	SMALL-LOSS	FOCAL	6	"CATSPER2,CKMT1B,MAP1A,PPIP5K1,STRC,TP53BP1"
TCGA.A6.3808.01A	15	43804340	43852604	13	-0.663	SMALL-LOSS	FOCAL	2	"MAP1A,PPIP5K1"
TCGA.CK.5914.01A	15	43875585	43891305	6	-0.8265	SMALL-LOSS	FOCAL	2	"CKMT1B,PPIP5K1"
TCGA.CK.6746	15	43893071	43938287	6	-0.9019	SMALL-LOSS	FOCAL	2	"CATSPER2,STRC"
TCGA.AA.A010.01A	15	43922818	43939185	12	-0.8066	SMALL-LOSS	FOCAL	1	CATSPER2
TCGA.AG.A011.01A	15	43927518	43991124	12	-0.7147	SMALL-LOSS	FOCAL	2	"CATSPER2,CKMT1A"
TCGA.CK.5914.01A	15	43928192	44038696	12	-0.5571	SMALL-LOSS	FOCAL	3	"CATSPER2,CKMT1A,PDIA3"
TCGA.AG.3909.01A	15	43932486	44055226	12	-1.285	SMALL-LOSS	FOCAL	3	"CATSPER2,CKMT1A,PDIA3"
TCGA.CK.5914.01A	15	44043709	44067943	18	-1.1917	SMALL-LOSS	FOCAL	2	"ELL3,PDIA3"
TCGA.CK.5914.01A	15	44068634	44131756	31	-0.5872	SMALL-LOSS	FOCAL	6	"ELL3,HYPK,MFAP1,SERF2,SERINC4,WDR76"
TCGA.AG.3909.01A	15	44093670	44131756	13	-1.0989	SMALL-LOSS	FOCAL	3	"HYPK,MFAP1,WDR76"
TCGA.AA.A00N.01A	15	44806728	44849640	9	-0.7577	SMALL-LOSS	FOCAL	2	"CTDSPL2,EIF3J"
TCGA.AA.A00N.01A	15	44941024	44961923	13	-0.9107	SMALL-LOSS	FOCAL	2	"PATL2,SPG11"
TCGA.A6.3808.01A	15	45253680	45433452	66	-0.8803	SMALL-LOSS	FOCAL	6	"C15orf43,DUOX1,DUOX2,DUOXA1,DUOXA2,SORD"
TCGA.AF.3914.01A	15	45389386	45406757	25	-0.6167	SMALL-LOSS	FOCAL	2	"DUOX2,DUOXA2"
TCGA.AA.A00N.01A	15	45390131	45470351	70	-0.7038	SMALL-LOSS	FOCAL	5	"DUOX1,DUOX2,DUOXA1,DUOXA2,SHF"
TCGA.AA.A01Q.01A	15	45393348	45470351	63	-0.5552	SMALL-LOSS	FOCAL	5	"DUOX1,DUOX2,DUOXA1,DUOXA2,SHF"
TCGA.AG.4009.01A	15	45393939	45414332	27	-0.6756	SMALL-LOSS	FOCAL	3	"DUOX2,DUOXA1,DUOXA2"
TCGA.AG.3909.01A	15	45398718	45470351	57	-1.0381	SMALL-LOSS	FOCAL	5	"DUOX1,DUOX2,DUOXA1,DUOXA2,SHF"
TCGA.AG.4009.01A	15	45445531	45453959	5	-0.6761	SMALL-LOSS	FOCAL	1	DUOX1
TCGA.AF.3914.01A	15	45452983	45464034	7	-1.2316	SMALL-LOSS	FOCAL	2	"DUOX1,SHF"
TCGA.AG.4009.01A	15	45454375	45490998	8	-1.1837	SMALL-LOSS	FOCAL	2	"DUOX1,SHF"
TCGA.AA.A00N.01A	15	45567582	45695151	11	-0.8645	SMALL-LOSS	FOCAL	3	"GATM,SLC28A2,SPATA5L1"
TCGA.AG.3909.01A	15	45567582	45695151	11	-0.9064	SMALL-LOSS	FOCAL	3	"GATM,SLC28A2,SPATA5L1"
TCGA.CK.5914.01A	15	45567582	45814110	29	-0.64	SMALL-LOSS	FOCAL	5	"C15orf48,GATM,SLC28A2,SLC30A4,SPATA5L1"
TCGA.AG.4009.01A	15	45654256	45668802	8	-0.7257	SMALL-LOSS	FOCAL	1	GATM
TCGA.A6.3808.01A	15	45658206	45983102	41	-0.5289	SMALL-LOSS	FOCAL	6	"BLOC1S6,C15orf48,GATM,SLC30A4,SPATA5L1,SQRDL"
TCGA.AG.A016.01A	15	45660221	45661487	2	-1.2603	SMALL-LOSS	FOCAL	1	GATM
TCGA.AA.3850	15	46171249	47645788	475	-0.84345	SMALL-LOSS	FOCAL	1	SEMA6D
TCGA.AA.3941	15	46251388	47644527	437	-0.6467	SMALL-LOSS	FOCAL	1	SEMA6D
TCGA.AA.3977	15	46268140	46273934	4	-1.1678	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	15	46467677	46527065	17	-0.6523	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6923	15	47518806	47519544	4	-1.1303	SMALL-LOSS	FOCAL	1	SEMA6D
TCGA.AA.A00N.01A	15	48443246	48460801	11	-0.6148	SMALL-LOSS	FOCAL	1	MYEF2
TCGA.CK.5914.01A	15	49159944	49176398	5	-0.9701	SMALL-LOSS	FOCAL	2	"EID1,SHC4"
TCGA.AA.A010.01A	15	49284413	49320603	13	-0.7416	SMALL-LOSS	FOCAL	1	SECISBP2L
TCGA.AG.3909.01A	15	49319521	49420828	8	-0.9417	SMALL-LOSS	FOCAL	2	"COPS2,SECISBP2L"
TCGA.AG.3909.01A	15	49659598	49926701	16	-0.9152	SMALL-LOSS	FOCAL	3	"DTWD1,FAM227B,FGF7"
TCGA.AA.A010.01A	15	49800391	49869757	6	-0.5615	SMALL-LOSS	FOCAL	1	FAM227B
TCGA.AA.3850	15	50193552	50355625	66	-0.88005	SMALL-LOSS	FOCAL	1	ATP8B4
TCGA.AG.3909.01A	15	50474598	50494637	3	-0.9128	SMALL-LOSS	FOCAL	1	SLC27A2
TCGA.AG.3909.01A	15	50731221	50757203	6	-0.8809	SMALL-LOSS	FOCAL	1	USP8
TCGA.A6.3808.01A	15	50731221	51207595	77	-0.7544	SMALL-LOSS	FOCAL	5	"AP4E1,SPPL2A,TRPM7,USP50,USP8"
TCGA.AA.3509.01A	15	50904709	51207595	33	-0.5976	SMALL-LOSS	FOCAL	3	"AP4E1,SPPL2A,TRPM7"
TCGA.AA.A00N.01A	15	51039645	51221159	10	-0.8066	SMALL-LOSS	FOCAL	2	"AP4E1,SPPL2A"
TCGA.AG.3909.01A	15	51041786	51217268	5	-1.1625	SMALL-LOSS	FOCAL	2	"AP4E1,SPPL2A"
TCGA.AZ.4684.01A	15	51988035	52684079	127	-0.6458	SMALL-LOSS	FOCAL	10	"BCL2L10,GNB5,LEO1,LYSMD2,MAPK6,MYO5A,MYO5C,SCG3,TMOD2,TMOD3"
TCGA.AA.A00N.01A	15	51991521	52200889	24	-0.6213	SMALL-LOSS	FOCAL	4	"LYSMD2,SCG3,TMOD2,TMOD3"
TCGA.AG.3909.01A	15	52015724	52161395	13	-0.7077	SMALL-LOSS	FOCAL	3	"LYSMD2,TMOD2,TMOD3"
TCGA.CK.5914.01A	15	52179746	52200889	7	-1.0245	SMALL-LOSS	FOCAL	1	TMOD3
TCGA.AA.A00N.01A	15	52402008	52420320	6	-1.148	SMALL-LOSS	FOCAL	2	"BCL2L10,GNB5"
TCGA.CK.5914.01A	15	52531903	52574937	21	-0.8066	SMALL-LOSS	FOCAL	1	MYO5C
TCGA.AA.A00N.01A	15	52556349	52609195	13	-1.0452	SMALL-LOSS	FOCAL	2	"MYO5A,MYO5C"
TCGA.AA.3941	15	52709876	52711643	4	-0.619	SMALL-LOSS	FOCAL	1	MYO5A
TCGA.AA.A00N.01A	15	52844090	52892287	8	-0.6477	SMALL-LOSS	FOCAL	2	"ARPP19,FAM214A"
TCGA.D5.6538	15	52993937	53466938	208	-0.5525	SMALL-LOSS	FOCAL	1	ONECUT1
TCGA.AA.3982	15	53241226	55394954	942	-0.6592	SMALL-LOSS	FOCAL	2	"UNC13C,WDR72"
TCGA.AA.3989	15	54506390	54522366	9	-0.8228	SMALL-LOSS	FOCAL	1	UNC13C
TCGA.AA.3941	15	54904391	54955139	23	-1.2437	SMALL-LOSS	FOCAL	1	UNC13C
TCGA.AA.A00N.01A	15	55681496	55789863	10	-1.2582	SMALL-LOSS	FOCAL	3	"C15orf65,CCPG1,DYX1C1"
TCGA.AG.3909.01A	15	55681496	55789863	10	-1.2337	SMALL-LOSS	FOCAL	3	"C15orf65,CCPG1,DYX1C1"
TCGA.AA.A00N.01A	15	56258611	56395703	9	-1.1945	SMALL-LOSS	FOCAL	2	"NEDD4,RFX7"
TCGA.D5.5538	15	57095436	57654389	129	-0.5866	SMALL-LOSS	FOCAL	1	TCF12
TCGA.F5.6864	15	57420116	59043785	832	-0.5623	SMALL-LOSS	FOCAL	9	"ADAM10,ALDH1A2,AQP9,CGNL1,GCOM1,LIPC,MYZAP,POLR2M,TCF12"
TCGA.AA.3850	15	57779034	57786419	5	-0.86245	SMALL-LOSS	FOCAL	1	CGNL1
TCGA.AG.3909.01A	15	58000864	58006717	3	-1.137	SMALL-LOSS	FOCAL	2	"GCOM1,POLR2M"
TCGA.AG.3909.01A	15	58855716	59416928	65	-0.5767	SMALL-LOSS	FOCAL	6	"ADAM10,CCNB2,FAM63B,LIPC,RNF111,SLTM"
TCGA.CK.5914.01A	15	59494489	59506780	8	-0.8783	SMALL-LOSS	FOCAL	2	"LDHAL6B,MYO1E"
TCGA.CK.5914.01A	15	59942821	59974560	13	-1.176	SMALL-LOSS	FOCAL	2	"BNIP2,GTF2A2"
TCGA.AA.A010.01A	15	60639759	60678170	12	-1.2163	SMALL-LOSS	FOCAL	1	ANXA2
TCGA.AG.4009.01A	15	60643335	60678170	10	-0.7811	SMALL-LOSS	FOCAL	1	ANXA2
TCGA.AG.3909.01A	15	60646294	60678170	7	-1.2013	SMALL-LOSS	FOCAL	1	ANXA2
TCGA.CK.5914.01A	15	60646294	60678170	7	-0.8547	SMALL-LOSS	FOCAL	1	ANXA2
TCGA.AG.3909.01A	15	60715781	60758742	11	-0.5895	SMALL-LOSS	FOCAL	1	ICE2
TCGA.AA.A00N.01A	15	60758742	60770059	4	-0.8303	SMALL-LOSS	FOCAL	1	ICE2
TCGA.AG.3909.01A	15	60760218	60770059	3	-1.1581	SMALL-LOSS	FOCAL	1	ICE2
TCGA.AA.3967.01A	15	60803373	62243117	53	-1.0493	SMALL-LOSS	FOCAL	2	"RORA,VPS13C"
TCGA.F5.6864	15	60861074	61403423	338	-0.5685	SMALL-LOSS	FOCAL	1	RORA
TCGA.A6.2675	15	60952378	61460121	340	-0.779	SMALL-LOSS	FOCAL	1	RORA
TCGA.AF.3913	15	60986571	61268281	187	-0.7451	SMALL-LOSS	FOCAL	1	RORA
TCGA.F5.6864	15	61466997	61921995	242	-0.5309	SMALL-LOSS	FOCAL	1	RORA
TCGA.AG.A01W.01A	15	61688282	61695635	4	-0.7493	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3667	15	61709892	61738086	9	-0.7217	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	15	62182332	62212660	12	-0.6765	SMALL-LOSS	FOCAL	1	VPS13C
TCGA.AA.3930.01A	15	62182332	62214559	14	-0.5867	SMALL-LOSS	FOCAL	1	VPS13C
TCGA.AA.3939.01A	15	62182332	62223252	18	-0.8071	SMALL-LOSS	FOCAL	1	VPS13C
TCGA.CK.5914.01A	15	62205468	62223252	13	-0.6242	SMALL-LOSS	FOCAL	1	VPS13C
TCGA.AZ.4684.01A	15	62273489	62302619	9	-0.7616	SMALL-LOSS	FOCAL	1	VPS13C
TCGA.AG.A01W.01A	15	62927837	63013338	13	-0.5563	SMALL-LOSS	FOCAL	1	TLN2
TCGA.AG.4009.01A	15	62965958	62993267	8	-0.837	SMALL-LOSS	FOCAL	1	TLN2
TCGA.CK.5914.01A	15	62984990	63008493	11	-0.883	SMALL-LOSS	FOCAL	1	TLN2
TCGA.AG.3909.01A	15	63000674	63363230	51	-0.5218	SMALL-LOSS	FOCAL	2	"TLN2,TPM1"
TCGA.AA.A00N.01A	15	63335863	63363230	14	-0.9065	SMALL-LOSS	FOCAL	1	TPM1
TCGA.CK.5914.01A	15	63414772	63448562	8	-1.2651	SMALL-LOSS	FOCAL	2	"LACTB,RPS27L"
TCGA.AG.4009.01A	15	63414772	63594503	21	-0.719	SMALL-LOSS	FOCAL	4	"APH1B,LACTB,RAB8B,RPS27L"
TCGA.AA.A00N.01A	15	63449501	63620214	18	-0.5984	SMALL-LOSS	FOCAL	4	"APH1B,CA12,RAB8B,RPS27L"
TCGA.AG.3909.01A	15	63481777	63620214	17	-0.7598	SMALL-LOSS	FOCAL	3	"APH1B,CA12,RAB8B"
TCGA.AA.A00N.01A	15	63866208	63916309	13	-0.6606	SMALL-LOSS	FOCAL	3	"FBXL22,HERC1,USP3"
TCGA.AG.4009.01A	15	63880487	63889559	4	-1.0006	SMALL-LOSS	FOCAL	2	"FBXL22,USP3"
TCGA.AA.3666	15	63901306	64437501	147	-1.2717	SMALL-LOSS	FOCAL	4	"DAPK2,FAM96A,HERC1,SNX1"
TCGA.AA.A010.01A	15	63916309	63935556	15	-0.8996	SMALL-LOSS	FOCAL	1	HERC1
TCGA.AA.3967.01A	15	63930856	64216939	60	-0.9767	SMALL-LOSS	FOCAL	2	"DAPK2,HERC1"
TCGA.AG.3909.01A	15	64332318	64429704	20	-0.592	SMALL-LOSS	FOCAL	3	"DAPK2,FAM96A,SNX1"
TCGA.AA.A00N.01A	15	64332318	64472499	34	-0.5484	SMALL-LOSS	FOCAL	6	"CSNK1G1,DAPK2,FAM96A,PPIB,SNX1,SNX22"
TCGA.AF.3914.01A	15	64444786	64448204	6	-1.1298	SMALL-LOSS	FOCAL	2	"PPIB,SNX22"
TCGA.AG.4009.01A	15	64444786	64454193	9	-1.2027	SMALL-LOSS	FOCAL	2	"PPIB,SNX22"
TCGA.AA.A01Q.01A	15	64448204	64454193	4	-0.8447	SMALL-LOSS	FOCAL	2	"PPIB,SNX22"
TCGA.AF.3913	15	64449514	64719303	28	-0.6311	SMALL-LOSS	FOCAL	5	"CSNK1G1,KIAA0101,PPIB,SNX22,TRIP4"
TCGA.EI.6508	15	64522760	64927170	36	-0.7438	SMALL-LOSS	FOCAL	4	"CSNK1G1,KIAA0101,TRIP4,ZNF609"
TCGA.AA.A010.01A	15	65033319	65114428	15	-0.7029	SMALL-LOSS	FOCAL	2	"PIF1,RBPMS2"
TCGA.AF.3914.01A	15	65033319	65140772	16	-0.9895	SMALL-LOSS	FOCAL	3	"PIF1,PLEKHO2,RBPMS2"
TCGA.AA.A01Q.01A	15	65041147	65114428	12	-0.6821	SMALL-LOSS	FOCAL	2	"PIF1,RBPMS2"
TCGA.AG.4009.01A	15	65054536	65114428	8	-1.0094	SMALL-LOSS	FOCAL	2	"PIF1,RBPMS2"
TCGA.AA.A00N.01A	15	65054536	65140772	12	-0.5744	SMALL-LOSS	FOCAL	3	"PIF1,PLEKHO2,RBPMS2"
TCGA.AG.3906.01A	15	65234616	65242050	5	-0.5801	SMALL-LOSS	FOCAL	1	ANKDD1A
TCGA.AA.A00N.01A	15	65268796	65319128	11	-1.3201	SMALL-LOSS	FOCAL	2	"MTFMT,SPG21"
TCGA.AA.A010.01A	15	65268796	65369124	21	-0.5851	SMALL-LOSS	FOCAL	4	"MTFMT,RASL12,SLC51B,SPG21"
TCGA.AG.3909.01A	15	65295359	65421350	20	-1.1582	SMALL-LOSS	FOCAL	6	"KBTBD13,MTFMT,PDCD7,RASL12,SLC51B,UBAP1L"
TCGA.AG.4009.01A	15	65350714	65421350	7	-1.1845	SMALL-LOSS	FOCAL	4	"KBTBD13,PDCD7,RASL12,UBAP1L"
TCGA.AG.3909.01A	15	65425268	65495650	18	-0.5728	SMALL-LOSS	FOCAL	3	"CILP,CLPX,PDCD7"
TCGA.AA.A010.01A	15	65450062	65456325	4	-0.9393	SMALL-LOSS	FOCAL	1	CLPX
TCGA.AG.3909.01A	15	65621199	65628111	10	-0.6281	SMALL-LOSS	FOCAL	1	IGDCC3
TCGA.AA.A010.01A	15	65627601	65748513	27	-1.2598	SMALL-LOSS	FOCAL	3	"DPP8,IGDCC3,IGDCC4"
TCGA.AF.3914.01A	15	65667387	65678857	5	-1.0952	SMALL-LOSS	FOCAL	2	"IGDCC3,IGDCC4"
TCGA.AA.A00N.01A	15	65667387	65688041	15	-0.6753	SMALL-LOSS	FOCAL	2	"IGDCC3,IGDCC4"
TCGA.AA.A01Q.01A	15	65667387	65703311	20	-0.6089	SMALL-LOSS	FOCAL	2	"IGDCC3,IGDCC4"
TCGA.AF.3914.01A	15	65684181	65693097	6	-1.0842	SMALL-LOSS	FOCAL	1	IGDCC4
TCGA.D5.6538	15	65689741	65706568	5	-0.8371	SMALL-LOSS	FOCAL	1	IGDCC4
TCGA.AA.A00N.01A	15	65790155	65792917	2	-0.5195	SMALL-LOSS	FOCAL	1	DPP8
TCGA.AG.3909.01A	15	65799534	65807911	3	-1.1829	SMALL-LOSS	FOCAL	1	DPP8
TCGA.AG.3909.01A	15	65877067	65885749	3	-0.6132	SMALL-LOSS	FOCAL	1	VWA9
TCGA.AA.A00N.01A	15	65885749	65916391	8	-0.6976	SMALL-LOSS	FOCAL	2	"SLC24A1,VWA9"
TCGA.AG.3909.01A	15	65888021	65916391	7	-1.0498	SMALL-LOSS	FOCAL	2	"SLC24A1,VWA9"
TCGA.D5.6923	15	66284968	67337889	430	-0.545	SMALL-LOSS	FOCAL	9	"DIS3L,LCTL,MAP2K1,MEGF11,RPL4,SMAD6,SNAPC5,TIPIN,ZWILCH"
TCGA.AZ.4684.01A	15	66420592	66832388	62	-0.8975	SMALL-LOSS	FOCAL	7	"DIS3L,MAP2K1,MEGF11,RPL4,SNAPC5,TIPIN,ZWILCH"
TCGA.AA.A010.01A	15	66587278	66615811	10	-1.0732	SMALL-LOSS	FOCAL	1	DIS3L
TCGA.AG.3909.01A	15	66779526	66855807	42	-0.5938	SMALL-LOSS	FOCAL	5	"LCTL,MAP2K1,RPL4,SNAPC5,ZWILCH"
TCGA.F5.6864	15	66960451	68123914	410	-0.5528	SMALL-LOSS	FOCAL	7	"AAGAB,C15orf61,IQCH,MAP2K5,SKOR1,SMAD3,SMAD6"
TCGA.A6.2675	15	66978810	68471890	489	-0.8059	SMALL-LOSS	FOCAL	8	"AAGAB,C15orf61,IQCH,MAP2K5,PIAS1,SKOR1,SMAD3,SMAD6"
TCGA.AG.3909.01A	15	67462826	67528971	14	-0.9813	SMALL-LOSS	FOCAL	2	"AAGAB,SMAD3"
TCGA.AA.A00N.01A	15	68117879	68125465	9	-1.2875	SMALL-LOSS	FOCAL	1	SKOR1
TCGA.AA.A01Q.01A	15	68122512	68124911	4	-1.1451	SMALL-LOSS	FOCAL	1	SKOR1
TCGA.AG.3909.01A	15	68503540	68582514	7	-1.0417	SMALL-LOSS	FOCAL	2	"CLN6,FEM1B"
TCGA.AA.A00N.01A	15	68506577	68582514	5	-1.1917	SMALL-LOSS	FOCAL	2	"CLN6,FEM1B"
TCGA.AA.3861.01A	15	68603279	69222923	43	-0.9815	SMALL-LOSS	FOCAL	5	"ANP32A,CORO2B,ITGA11,NOX5,SPESP1"
TCGA.AA.A00A.01A	15	69072360	69080087	6	-0.6159	SMALL-LOSS	FOCAL	1	ANP32A
TCGA.AG.3909.01A	15	69079715	69238326	6	-1.101	SMALL-LOSS	FOCAL	3	"ANP32A,NOX5,SPESP1"
TCGA.AA.A010.01A	15	69112982	69560512	22	-0.7302	SMALL-LOSS	FOCAL	4	"ANP32A,GLCE,NOX5,SPESP1"
TCGA.AA.A01Z	15	69375063	69625269	68	-0.7224	SMALL-LOSS	FOCAL	2	"GLCE,PAQR5"
TCGA.AA.A00N.01A	15	69689769	69706711	4	-0.6156	SMALL-LOSS	FOCAL	2	"KIF23,PAQR5"
TCGA.CK.5914.01A	15	69689769	70389029	48	-0.678	SMALL-LOSS	FOCAL	4	"KIF23,PAQR5,RPLP1,TLE3"
TCGA.AA.A00N.01A	15	70344664	70389029	19	-0.6276	SMALL-LOSS	FOCAL	1	TLE3
TCGA.CK.5914.01A	15	70994158	71211361	14	-0.7305	SMALL-LOSS	FOCAL	4	"LARP6,LRRC49,THAP10,UACA"
TCGA.AA.A00N.01A	15	71403441	71433790	3	-1.0764	SMALL-LOSS	FOCAL	2	"CT62,THSD4"
TCGA.AA.A00N.01A	15	72109861	72122402	4	-1.3049	SMALL-LOSS	FOCAL	2	"MYO9A,NR2E3"
TCGA.AA.A00N.01A	15	72460783	72552770	29	-0.6979	SMALL-LOSS	FOCAL	3	"GRAMD2,PARP6,PKM"
TCGA.AG.4009.01A	15	72491944	72509707	10	-1.2053	SMALL-LOSS	FOCAL	1	PKM
TCGA.AG.3909.01A	15	72499451	72552770	21	-0.8661	SMALL-LOSS	FOCAL	2	"PARP6,PKM"
TCGA.AG.4009.01A	15	72511258	72557698	20	-0.6723	SMALL-LOSS	FOCAL	2	"PARP6,PKM"
TCGA.AG.4009.01A	15	72558186	72597014	7	-1.1497	SMALL-LOSS	FOCAL	2	"CELF6,PARP6"
TCGA.AG.3909.01A	15	74001920	74032231	4	-1.2238	SMALL-LOSS	FOCAL	2	"C15orf59,CD276"
TCGA.AA.A00D.01A	15	74032231	74180716	11	-0.573	SMALL-LOSS	FOCAL	2	"C15orf59,TBC1D21"
TCGA.AM.5820	15	74168174	74172012	4	-0.5167	SMALL-LOSS	FOCAL	1	TBC1D21
TCGA.AA.A010.01A	15	74235168	74282640	12	-1.0526	SMALL-LOSS	FOCAL	2	"LOXL1,STOML1"
TCGA.AG.3906.01A	15	74865177	75014572	26	-0.6814	SMALL-LOSS	FOCAL	4	"ARID3B,CLK3,CYP1A1,EDC3"
TCGA.AG.A01W.01A	15	75097495	75108862	6	-0.7046	SMALL-LOSS	FOCAL	1	LMAN1L
TCGA.AG.4009.01A	15	75105155	75221405	40	-0.7964	SMALL-LOSS	FOCAL	7	"COX5A,CPLX3,FAM219B,LMAN1L,MPI,SCAMP2,ULK3"
TCGA.AA.A01Q.01A	15	75108791	75122424	14	-0.957	SMALL-LOSS	FOCAL	2	"CPLX3,LMAN1L"
TCGA.AF.3914.01A	15	75112937	75120328	9	-1.0548	SMALL-LOSS	FOCAL	2	"CPLX3,LMAN1L"
TCGA.AA.A00N.01A	15	75114105	75221405	44	-0.8121	SMALL-LOSS	FOCAL	7	"COX5A,CPLX3,FAM219B,LMAN1L,MPI,SCAMP2,ULK3"
TCGA.AA.A010.01A	15	75304098	75311128	6	-1.0689	SMALL-LOSS	FOCAL	1	SCAMP5
TCGA.AG.3906.01A	15	75650555	75656789	11	-0.9821	SMALL-LOSS	FOCAL	1	MAN2C1
TCGA.AG.3906.01A	15	75658802	75722480	21	-0.5176	SMALL-LOSS	FOCAL	2	"MAN2C1,SIN3A"
TCGA.AA.A010.01A	15	75664273	75688549	9	-0.5217	SMALL-LOSS	FOCAL	1	SIN3A
TCGA.AG.4009.01A	15	75761060	75801207	8	-1.2735	SMALL-LOSS	FOCAL	1	PTPN9
TCGA.AA.A010.01A	15	75815411	75893419	5	-0.6725	SMALL-LOSS	FOCAL	2	"PTPN9,SNUPN"
TCGA.AA.A010.01A	15	76136648	76175649	9	-1.0698	SMALL-LOSS	FOCAL	1	UBE2Q2
TCGA.AA.A00N.01A	15	76484277	76646252	23	-0.5836	SMALL-LOSS	FOCAL	4	"C15orf27,ETFA,ISL2,SCAPER"
TCGA.AG.4009.01A	15	76587903	76668466	9	-0.6319	SMALL-LOSS	FOCAL	3	"ETFA,ISL2,SCAPER"
TCGA.AA.A010.01A	15	76629157	76696844	12	-0.9174	SMALL-LOSS	FOCAL	2	"ISL2,SCAPER"
TCGA.AA.A00N.01A	15	77134028	77239734	9	-1.1717	SMALL-LOSS	FOCAL	2	"RCN2,SCAPER"
TCGA.CK.5914.01A	15	77176094	77241394	8	-1.0425	SMALL-LOSS	FOCAL	2	"RCN2,SCAPER"
TCGA.AA.A00N.01A	15	77339145	77348358	6	-1.2677	SMALL-LOSS	FOCAL	1	TSPAN3
TCGA.AA.A00N.01A	15	77906368	78301302	6	-0.9517	SMALL-LOSS	FOCAL	2	"LINGO1,TBC1D2B"
TCGA.AA.A010.01A	15	78390224	78415988	9	-0.9101	SMALL-LOSS	FOCAL	2	"CIB2,SH2D7"
TCGA.AA.A00N.01A	15	78447488	78463738	10	-1.0749	SMALL-LOSS	FOCAL	2	"ACSBG1,IDH3A"
TCGA.AG.3909.01A	15	78465887	78485801	8	-0.6089	SMALL-LOSS	FOCAL	1	ACSBG1
TCGA.AG.3906.01A	15	78470950	78486847	8	-1.2183	SMALL-LOSS	FOCAL	1	ACSBG1
TCGA.CK.5914.01A	15	78558529	78873101	54	-0.9124	SMALL-LOSS	FOCAL	7	"CHRNA5,CRABP1,DNAJA4,HYKK,IREB2,PSMA4,WDR61"
TCGA.AA.A01Q.01A	15	78562832	78587935	15	-0.5789	SMALL-LOSS	FOCAL	2	"DNAJA4,WDR61"
TCGA.AA.A010.01A	15	78584911	78587935	4	-0.7716	SMALL-LOSS	FOCAL	1	WDR61
TCGA.AG.3909.01A	15	78633334	78786224	21	-0.7504	SMALL-LOSS	FOCAL	2	"CRABP1,IREB2"
TCGA.A6.3808.01A	15	78780942	79189301	70	-0.8799	SMALL-LOSS	FOCAL	8	"ADAMTS7,CHRNA3,CHRNA5,CHRNB4,HYKK,IREB2,MORF4L1,PSMA4"
TCGA.AA.A00N.01A	15	78786224	78790327	3	-1.0949	SMALL-LOSS	FOCAL	1	IREB2
TCGA.AA.A010.01A	15	78829542	78909328	17	-0.9198	SMALL-LOSS	FOCAL	4	"CHRNA3,CHRNA5,HYKK,PSMA4"
TCGA.AG.3909.01A	15	78873101	78893553	7	-0.5666	SMALL-LOSS	FOCAL	2	"CHRNA3,CHRNA5"
TCGA.AA.A00N.01A	15	78873101	78910885	9	-0.9215	SMALL-LOSS	FOCAL	2	"CHRNA3,CHRNA5"
TCGA.AA.A01Q.01A	15	79272910	79312316	15	-0.7881	SMALL-LOSS	FOCAL	1	RASGRF1
TCGA.AA.A00N.01A	15	79585579	80216989	16	-0.7348	SMALL-LOSS	FOCAL	6	"ANKRD34C,KIAA1024,MTHFS,ST20,ST20-MTHFS,TMED3"
TCGA.AA.3941	15	79877896	79891749	11	-0.8195	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6461	15	80620497	81458125	325	-0.5662	SMALL-LOSS	FOCAL	6	"ABHD17C,ARNT2,C15orf26,CEMIP,MESDC1,MESDC2"
TCGA.AA.A010.01A	15	80987733	81046451	3	-0.8821	SMALL-LOSS	FOCAL	1	ABHD17C
TCGA.AA.A00N.01A	15	81271508	81440629	13	-0.8204	SMALL-LOSS	FOCAL	3	"C15orf26,MESDC1,MESDC2"
TCGA.AA.A010.01A	15	81271508	81517722	14	-0.5917	SMALL-LOSS	FOCAL	4	"C15orf26,IL16,MESDC1,MESDC2"
TCGA.CK.5914.01A	15	81295246	81440629	9	-1.0528	SMALL-LOSS	FOCAL	2	"C15orf26,MESDC1"
TCGA.AG.3909.01A	15	82532732	83358091	38	-0.8185	SMALL-LOSS	FOCAL	7	"AP3B2,CPEB1,EFTUD1,GOLGA6L10,GOLGA6L9,RPS17,SAXO2"
TCGA.AG.3909.01A	15	83481808	83491810	5	-0.7837	SMALL-LOSS	FOCAL	1	WHAMM
TCGA.AG.3909.01A	15	83495129	83725092	25	-1.2109	SMALL-LOSS	FOCAL	5	"BTBD1,C15orf40,FAM103A1,HOMER2,WHAMM"
TCGA.CK.5914.01A	15	83657734	83725092	15	-1.0921	SMALL-LOSS	FOCAL	3	"BTBD1,C15orf40,FAM103A1"
TCGA.AA.A00N.01A	15	83680201	83796070	18	-0.8919	SMALL-LOSS	FOCAL	3	"BTBD1,C15orf40,TM6SF1"
TCGA.AG.3909.01A	15	84706404	85165452	6	-0.6509	SMALL-LOSS	FOCAL	4	"ADAMTSL3,GOLGA6L4,UBE2Q2L,ZSCAN2"
TCGA.CK.5914.01A	15	84706404	85230826	23	-0.8365	SMALL-LOSS	FOCAL	7	"ADAMTSL3,GOLGA6L4,NMB,SEC11A,UBE2Q2L,WDR73,ZSCAN2"
TCGA.AA.3875	15	84782416	84788734	3	-1.2055	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	15	85149707	85234718	22	-1.2145	SMALL-LOSS	FOCAL	4	"NMB,SEC11A,WDR73,ZSCAN2"
TCGA.CK.5914.01A	15	85360060	85410486	13	-0.5235	SMALL-LOSS	FOCAL	1	ALPK3
TCGA.AG.3909.01A	15	85366484	85410486	12	-0.8388	SMALL-LOSS	FOCAL	1	ALPK3
TCGA.AA.3941	15	86036647	86040393	8	-0.8582	SMALL-LOSS	FOCAL	1	AKAP13
TCGA.CK.5914.01A	15	86278204	86313672	9	-0.6608	SMALL-LOSS	FOCAL	2	"AKAP13,KLHL25"
TCGA.AA.3982	15	86895042	88066217	561	-0.62	SMALL-LOSS	FOCAL	1	AGBL1
TCGA.DY.A0XA	15	87286023	88404390	517	-0.7662	SMALL-LOSS	FOCAL	1	AGBL1
TCGA.DM.A1HA	15	87347332	87487255	91	-1.16	SMALL-LOSS	FOCAL	1	AGBL1
TCGA.F4.6461	15	87629626	88326850	295	-0.515	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3989	15	87942450	87944953	3	-1.1302	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	15	88826206	88831143	5	-0.6083	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	15	89015811	89056150	5	-0.5887	SMALL-LOSS	FOCAL	2	"DET1,MRPS11"
TCGA.AA.A00N.01A	15	89379375	89452981	28	-0.5542	SMALL-LOSS	FOCAL	3	"ACAN,HAPLN3,MFGE8"
TCGA.AG.3909.01A	15	89736422	89828286	25	-0.65	SMALL-LOSS	FOCAL	3	"ABHD2,FANCI,RLBP1"
TCGA.AA.A00N.01A	15	89816558	89828286	8	-0.6496	SMALL-LOSS	FOCAL	1	FANCI
TCGA.AG.4009.01A	15	89819905	89834797	8	-0.5482	SMALL-LOSS	FOCAL	1	FANCI
TCGA.AF.3914.01A	15	89824369	89911195	38	-0.5846	SMALL-LOSS	FOCAL	2	"FANCI,POLG"
TCGA.CK.5914.01A	15	89833387	89843473	7	-1.3036	SMALL-LOSS	FOCAL	1	FANCI
TCGA.AG.4009.01A	15	89835901	89848826	8	-1.0691	SMALL-LOSS	FOCAL	1	FANCI
TCGA.CK.5914.01A	15	89844510	89860578	12	-0.7863	SMALL-LOSS	FOCAL	2	"FANCI,POLG"
TCGA.AA.A010.01A	15	89849191	89863965	11	-1.0217	SMALL-LOSS	FOCAL	2	"FANCI,POLG"
TCGA.AG.4009.01A	15	89849191	89876298	23	-0.6153	SMALL-LOSS	FOCAL	2	"FANCI,POLG"
TCGA.AG.3909.01A	15	89856069	89860578	6	-0.8774	SMALL-LOSS	FOCAL	2	"FANCI,POLG"
TCGA.AG.3909.01A	15	89871899	90172160	38	-0.9246	SMALL-LOSS	FOCAL	4	"KIF7,POLG,RHCG,TICRR"
TCGA.AA.A010.01A	15	90125906	90161335	14	-0.5797	SMALL-LOSS	FOCAL	1	TICRR
TCGA.AA.A010.01A	15	90162892	90185394	16	-1.1473	SMALL-LOSS	FOCAL	2	"KIF7,TICRR"
TCGA.AG.4009.01A	15	90176875	90226576	14	-1.0656	SMALL-LOSS	FOCAL	3	"KIF7,PEX11A,PLIN1"
TCGA.AA.A00N.01A	15	90773635	90933967	24	-0.964	SMALL-LOSS	FOCAL	5	"CIB1,GDPGP1,IQGAP1,NGRN,ZNF774"
TCGA.AG.3909.01A	15	91029210	91290586	22	-0.5263	SMALL-LOSS	FOCAL	3	"BLM,CRTC3,IQGAP1"
TCGA.AA.A010.01A	15	91034516	91136817	8	-0.6837	SMALL-LOSS	FOCAL	2	"CRTC3,IQGAP1"
TCGA.A6.3808.01A	15	91303360	91512243	94	-0.9591	SMALL-LOSS	FOCAL	8	"BLM,FES,FURIN,HDDC3,MAN2A2,PRC1,RCCD1,UNC45A"
TCGA.AA.A00N.01A	15	91341391	91503083	77	-0.7009	SMALL-LOSS	FOCAL	7	"BLM,FES,FURIN,HDDC3,MAN2A2,RCCD1,UNC45A"
TCGA.AG.3909.01A	15	91346714	91358310	5	-0.9877	SMALL-LOSS	FOCAL	1	BLM
TCGA.CK.5914.01A	15	91352315	91503536	74	-0.5588	SMALL-LOSS	FOCAL	7	"BLM,FES,FURIN,HDDC3,MAN2A2,RCCD1,UNC45A"
TCGA.AG.4009.01A	15	91419458	91455221	32	-0.6912	SMALL-LOSS	FOCAL	3	"FES,FURIN,MAN2A2"
TCGA.AG.3909.01A	15	91436866	91504172	46	-0.7862	SMALL-LOSS	FOCAL	5	"FES,HDDC3,MAN2A2,RCCD1,UNC45A"
TCGA.AA.A010.01A	15	91479136	91527871	38	-0.7599	SMALL-LOSS	FOCAL	3	"PRC1,RCCD1,UNC45A"
TCGA.AG.4009.01A	15	91491832	91527871	25	-0.655	SMALL-LOSS	FOCAL	3	"PRC1,RCCD1,UNC45A"
TCGA.CK.5914.01A	15	91504172	91527871	15	-1.1206	SMALL-LOSS	FOCAL	2	"PRC1,RCCD1"
TCGA.AA.A00N.01A	15	91537545	91557537	19	-0.6686	SMALL-LOSS	FOCAL	2	"PRC1,VPS33B"
TCGA.AA.3875	15	91849013	91857950	3	-0.9662	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	15	92139578	92148224	9	-0.8782	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	15	92139578	92148224	9	-1.1571	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	15	92140178	92148224	8	-0.724	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Z	15	92505226	93452296	499	-0.8448	SMALL-LOSS	FOCAL	5	"C15orf32,CHD2,FAM174B,SLCO3A1,ST8SIA2"
TCGA.AA.3870	15	93110630	93111686	4	-1.0647	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	15	93516910	93526002	3	-1.0817	SMALL-LOSS	FOCAL	1	CHD2
TCGA.AA.A00N.01A	15	93552325	93616118	8	-0.8295	SMALL-LOSS	FOCAL	2	"CHD2,RGMA"
TCGA.AA.3941	15	94054391	94059330	3	-1.0684	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6675	15	94512852	94659513	71	-1.0066	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A0XA	15	95450130	96070286	235	-0.6886	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3956	15	96100808	96155530	27	-0.7377	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	15	96233381	96267514	9	-1.27435	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	15	96869460	98514293	14	-0.682	SMALL-LOSS	FOCAL	3	"ARRDC4,NR2F2,SPATA8"
TCGA.AA.A00N.01A	15	96869460	99192786	22	-0.9638	SMALL-LOSS	FOCAL	5	"ARRDC4,FAM169B,IGF1R,NR2F2,SPATA8"
TCGA.DY.A0XA	15	97157484	97514049	114	-0.7262	SMALL-LOSS	FOCAL	1	SPATA8
TCGA.D5.6923	15	97947661	99008846	436	-0.5202	SMALL-LOSS	FOCAL	2	"ARRDC4,FAM169B"
TCGA.AA.3941	15	97998760	98112617	38	-1.039	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3956	15	98039983	98075231	9	-0.8641	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	15	98255927	98262689	9	-1.264	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	15	98781879	98790716	4	-1.11905	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	15	100243492	100271944	7	-1.1101	SMALL-LOSS	FOCAL	2	"LYSMD4,MEF2A"
TCGA.AA.3941	15	100318914	100415573	34	-0.9093	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	15	100319602	100415573	32	-1.13555	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	15	100394055	100400214	7	-0.8158	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3869	15	100975212	101048704	49	-1.1373	SMALL-LOSS	FOCAL	1	CERS3
TCGA.AA.A00N.01A	15	101109426	101464790	23	-0.8157	SMALL-LOSS	FOCAL	4	"ALDH1A3,ASB7,LINS,LRRK1"
TCGA.AG.3909.01A	15	101109426	101593429	44	-0.8309	SMALL-LOSS	FOCAL	4	"ALDH1A3,ASB7,LINS,LRRK1"
TCGA.AG.3611.01A	15	101113809	101152370	5	-0.6293	SMALL-LOSS	FOCAL	2	"ASB7,LINS"
TCGA.CK.5914.01A	15	101152370	101775330	50	-0.5663	SMALL-LOSS	FOCAL	4	"ALDH1A3,ASB7,CHSY1,LRRK1"
TCGA.AA.A01Q.01A	15	101188501	101454846	13	-0.7443	SMALL-LOSS	FOCAL	2	"ALDH1A3,ASB7"
TCGA.AG.4009.01A	15	101425435	101529403	16	-0.8819	SMALL-LOSS	FOCAL	2	"ALDH1A3,LRRK1"
TCGA.AA.A00N.01A	15	101586186	101791295	18	-0.7208	SMALL-LOSS	FOCAL	2	"CHSY1,LRRK1"
TCGA.A6.6141	15	101637805	101712198	38	-0.5337	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A026	15	101729600	102400036	264	-0.6581	SMALL-LOSS	FOCAL	8	"CHSY1,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.AA.A010.01A	15	101775330	101832110	13	-0.9407	SMALL-LOSS	FOCAL	3	"CHSY1,SNRPA1,VIMP"
TCGA.AG.3909.01A	15	101871779	102185246	16	-1.0016	SMALL-LOSS	FOCAL	2	"PCSK6,TM2D3"
TCGA.AG.3906.01A	15	102182631	102462347	25	-0.6732	SMALL-LOSS	FOCAL	5	"OR4F15,OR4F4,OR4F6,TARSL2,TM2D3"
TCGA.AG.3909.01A	15	102197923	102263253	15	-0.8386	SMALL-LOSS	FOCAL	1	TARSL2
TCGA.AA.3850	15	102334856	102400036	16	-0.54855	SMALL-LOSS	FOCAL	2	"OR4F15,OR4F6"
TCGA.AA.A00D.01A	15	102345941	102462347	3	-0.6466	SMALL-LOSS	FOCAL	3	"OR4F15,OR4F4,OR4F6"
TCGA.AZ.4615	16	91009	114534	6	-0.6301	SMALL-LOSS	FOCAL	3	"POLR3K,RHBDF1,SNRNP25"
TCGA.AG.3732	16	94807	107274	4	-0.5243	SMALL-LOSS	FOCAL	2	"POLR3K,SNRNP25"
TCGA.AA.A00N.01A	16	97383	110149	13	-1.088	SMALL-LOSS	FOCAL	3	"POLR3K,RHBDF1,SNRNP25"
TCGA.AG.4009.01A	16	97383	138659	19	-0.9606	SMALL-LOSS	FOCAL	5	"MPG,NPRL3,POLR3K,RHBDF1,SNRNP25"
TCGA.AA.A01Q.01A	16	97383	216310	23	-0.7454	SMALL-LOSS	FOCAL	7	"HBM,HBZ,MPG,NPRL3,POLR3K,RHBDF1,SNRNP25"
TCGA.AA.A02K.01A	16	106480	133025	12	-0.5542	SMALL-LOSS	FOCAL	3	"MPG,RHBDF1,SNRNP25"
TCGA.AA.A010.01A	16	341143	364494	7	-1.021	SMALL-LOSS	FOCAL	1	AXIN1
TCGA.AA.A010.01A	16	546740	555477	4	-1.2107	SMALL-LOSS	FOCAL	1	RAB11FIP3
TCGA.D5.5541	16	731770	766484	4	-1.1041	SMALL-LOSS	FOCAL	5	"FBXL16,JMJD8,METRN,STUB1,WDR24"
TCGA.D5.5541	16	1007762	1226197	24	-0.7463	SMALL-LOSS	FOCAL	5	"C1QTNF8,CACNA1H,LMF1,SOX8,SSTR5"
TCGA.CK.6747	16	1016056	1113694	15	-0.5635	SMALL-LOSS	FOCAL	2	"LMF1,SOX8"
TCGA.AA.A010.01A	16	1267867	1308010	17	-0.8242	SMALL-LOSS	FOCAL	5	"CACNA1H,TPSAB1,TPSB2,TPSD1,TPSG1"
TCGA.AG.3725	16	1336437	1349928	3	-0.8645	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	16	1393971	1479163	14	-0.9321	SMALL-LOSS	FOCAL	5	"BAIAP3,C16orf91,GNPTG,TSR3,UNKL"
TCGA.AA.A010.01A	16	1487801	1546972	34	-0.6166	SMALL-LOSS	FOCAL	4	"CCDC154,CLCN7,PTX4,TELO2"
TCGA.AA.A00N.01A	16	1652323	1810354	37	-0.8964	SMALL-LOSS	FOCAL	4	"CRAMP1L,HN1L,IFT140,MAPK8IP3"
TCGA.AA.A010.01A	16	1687770	1866847	61	-0.964	SMALL-LOSS	FOCAL	10	"CRAMP1L,EME2,HAGH,HN1L,IGFALS,MAPK8IP3,MRPS34,NME3,NUBP2,SPSB3"
TCGA.AA.3509.01A	16	1878289	1918054	13	-0.8159	SMALL-LOSS	FOCAL	2	"FAHD1,MEIOB"
TCGA.AZ.4684.01A	16	1878289	1918054	13	-0.7154	SMALL-LOSS	FOCAL	2	"FAHD1,MEIOB"
TCGA.AA.A010.01A	16	1894822	2029153	40	-1.2614	SMALL-LOSS	FOCAL	9	"HS3ST6,MEIOB,MSRB1,NDUFB10,NOXO1,RNF151,RPL3L,RPS2,TBL3"
TCGA.AA.A010.01A	16	2093549	2125780	27	-1.2853	SMALL-LOSS	FOCAL	2	"NTHL1,TSC2"
TCGA.AA.A01Q.01A	16	2223144	2226284	6	-1.0621	SMALL-LOSS	FOCAL	1	TRAF7
TCGA.AG.4009.01A	16	2223144	2331334	43	-0.7221	SMALL-LOSS	FOCAL	10	"ABCA3,BRICD5,CASKIN1,DNASE1L2,E4F1,ECI1,MLST8,PGP,RNPS1,TRAF7"
TCGA.A6.3808.01A	16	2288295	2522621	70	-0.7648	SMALL-LOSS	FOCAL	7	"ABCA3,C16orf59,CCNF,DNASE1L2,ECI1,NTN3,RNPS1"
TCGA.AG.4009.01A	16	2369575	2550845	30	-0.5907	SMALL-LOSS	FOCAL	5	"ABCA3,C16orf59,CCNF,NTN3,TBC1D24"
TCGA.AA.3488	16	2429893	2434430	3	-1.0511	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	16	2763483	2881766	27	-0.6593	SMALL-LOSS	FOCAL	7	"PRSS21,PRSS27,PRSS33,PRSS41,SRRM2,TCEB2,ZG16B"
TCGA.AA.A010.01A	16	2848459	2854896	5	-0.9904	SMALL-LOSS	FOCAL	1	PRSS41
TCGA.AG.4009.01A	16	3187251	3349294	27	-0.9507	SMALL-LOSS	FOCAL	6	"MEFV,OR1F1,TIGD7,ZNF200,ZNF213,ZNF263"
TCGA.AA.A00N.01A	16	3296437	3335010	8	-0.7838	SMALL-LOSS	FOCAL	2	"MEFV,ZNF263"
TCGA.AA.A00N.01A	16	3405944	3576362	32	-0.6793	SMALL-LOSS	FOCAL	8	"C16orf90,CLUAP1,MTRNR2L4,NAA60,OR2C1,ZNF174,ZNF597,ZSCAN32"
TCGA.AA.3666	16	3583681	3896233	71	-1.0009	SMALL-LOSS	FOCAL	6	"CLUAP1,CREBBP,DNASE1,NLRC3,SLX4,TRAP1"
TCGA.AG.3909.01A	16	3634732	3705818	12	-0.5679	SMALL-LOSS	FOCAL	2	"DNASE1,SLX4"
TCGA.AA.A010.01A	16	4308009	4415419	28	-1.2748	SMALL-LOSS	FOCAL	5	"CORO7,CORO7-PAM16,GLIS2,PAM16,TFAP4"
TCGA.AG.4009.01A	16	4312287	4430887	11	-0.7858	SMALL-LOSS	FOCAL	6	"CORO7,CORO7-PAM16,GLIS2,PAM16,TFAP4,VASN"
TCGA.AG.4009.01A	16	4744912	4755058	8	-0.6909	SMALL-LOSS	FOCAL	2	"ANKS3,NUDT16L1"
TCGA.AA.A00N.01A	16	4748760	4938923	70	-0.669	SMALL-LOSS	FOCAL	9	"ANKS3,C16orf71,GLYR1,PPL,ROGDI,SEPT12,SMIM22,UBN1,ZNF500"
TCGA.AG.4009.01A	16	4829658	4910711	28	-0.6644	SMALL-LOSS	FOCAL	5	"GLYR1,ROGDI,SEPT12,SMIM22,UBN1"
TCGA.AA.A010.01A	16	4896097	4924200	15	-0.5204	SMALL-LOSS	FOCAL	2	"GLYR1,UBN1"
TCGA.AA.3560	16	5264398	5479167	96	-0.7677	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28A	16	5282674	5373939	22	-0.8283	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3896	16	5360633	5716746	255	-0.8613	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3592	16	5360633	5869649	389	-0.7494	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28F	16	5427238	6005852	443	-0.6299	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D0	16	5446205	5969891	416	-0.7676	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DF	16	5454453	5967409	417	-0.605	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3966	16	5460944	6417176	750	-0.6309	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.7002	16	5483426	5697394	174	-1.2078	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Z	16	5495967	5509503	10	-0.6875	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A026	16	5507615	6107173	476	-0.615	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.NH.A6GC	16	5571608	5571796	4	-0.9393	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3522	16	5689404	6188570	412	-0.6036	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.A02N	16	5740710	6512732	615	-0.7789	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.6681	16	5788914	6082138	217	-0.6226	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5913	16	5793162	5794311	5	-0.8929	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3664	16	5804159	5950603	115	-0.9262	SMALL-LOSS	FOCAL	0	None
TCGA.EF.5830	16	5829550	5912616	64	-0.7521	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2678	16	5858933	6309615	342	-0.8835	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6586	16	5950552	5998976	42	-0.726	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3518	16	5998885	6241182	190	-0.8215	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.4745	16	6027737	6281292	190	-0.9301	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28F	16	6043105	6161994	102	-0.637	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6163	16	6054841	6665696	510	-0.5519	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.4743	16	6065847	6107553	30	-0.6453	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6903	16	6065847	6509670	356	-0.5508	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6513	16	6071497	6147644	73	-0.8506	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6294	16	6081911	6112243	26	-0.8308	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AY.6386	16	6102911	6385881	226	-0.6947	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6930	16	6106358	7122873	826	-0.707	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	6120884	6181014	63	-0.5569	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3492	16	6124713	6272048	109	-0.8848	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A1D6	16	6155228	6566663	323	-0.8114	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3685	16	6161119	6610702	368	-0.8019	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.3913	16	6161458	6363706	154	-0.6598	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	6163123	6165125	6	-0.66885	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6137	16	6163935	6891364	601	-0.5182	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	6177739	6182113	8	-0.59355	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6294	16	6186395	6281174	49	-0.8204	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DY.A1DD	16	6186395	6413743	161	-0.9435	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4614	16	6186395	6606587	328	-1.1551	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	6186576	6380695	136	-0.7678	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3511	16	6188503	6491191	232	-0.7917	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6205208	6377254	123	-0.8439	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	6213136	6304579	58	-0.5786	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3971	16	6215487	6382433	123	-0.5462	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3543	16	6216643	6531617	237	-1.06	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CA.6715	16	6221275	6417205	147	-1.0331	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3502	16	6224659	6944188	602	-0.9668	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5913	16	6231875	6321976	66	-0.6789	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.F4.6855	16	6231875	6928433	588	-0.574	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.4743	16	6235800	6931013	590	-0.737	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3955	16	6238152	6550614	241	-0.5197	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.6682	16	6238958	6299207	32	-0.7698	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3742	16	6250970	6408153	126	-0.8485	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3877	16	6266524	6336184	57	-0.5409	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6267056	6349392	72	-0.7088	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6653	16	6268840	6523141	211	-0.8062	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4308	16	6270451	6357059	75	-0.5931	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.7002	16	6272048	6421145	130	-0.5366	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2686	16	6281262	6508631	196	-0.8911	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6535	16	6284886	6564547	233	-1.0639	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3887	16	6291018	6618259	281	-0.7876	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.5M.AAT4	16	6294808	6445053	136	-0.7802	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6746	16	6298957	6305101	10	-0.8176	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6169	16	6302520	6330855	26	-0.8565	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A01P	16	6313107	7034381	602	-0.7981	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28K	16	6318192	6583124	214	-0.9803	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6607	16	6330855	6876540	478	-0.8155	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	6334990	6337760	5	-1.13665	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.F5.6813	16	6334990	6709030	331	-0.5377	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5913	16	6335330	6505290	148	-0.6794	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3666	16	6340644	6548426	161	-0.6759	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	6356186	6438774	74	-0.5335	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.4107	16	6356689	6621231	225	-0.564	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AY.4070	16	6356689	6926260	488	-0.9226	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.5M.AATE	16	6357059	6366725	10	-0.5166	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.4008	16	6362279	6876854	449	-1.0603	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3664	16	6363706	6413743	39	-0.913	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CA.5254	16	6377254	6566663	155	-0.6141	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6586	16	6377498	6846270	424	-0.6892	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.5860	16	6385881	6421145	37	-0.6351	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.F4.6856	16	6385881	6646539	225	-0.524	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3971	16	6385881	6671810	261	-1.306	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DY.A1H8	16	6387347	6698817	281	-0.9323	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6509	16	6392350	6564333	140	-0.5611	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.4105	16	6393039	6416632	16	-0.9538	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6540	16	6393039	6586875	166	-0.8269	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AY.6197	16	6397436	6572048	137	-0.8898	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AD.A5EK	16	6397436	6609562	182	-1.2449	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2674	16	6399475	6681183	258	-0.7393	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.QL.A97D	16	6402154	6464447	60	-0.7649	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.SS.A7HO	16	6402154	6466782	63	-0.8995	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	6402154	6491125	79	-0.7919	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.5861	16	6408153	6491783	77	-0.6867	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.A56K	16	6408153	6737682	289	-0.6038	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6746	16	6413743	6611882	176	-1.0654	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6751	16	6416632	6417205	3	-1.1726	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6544	16	6416632	6876540	406	-1.2035	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AU.6004	16	6417205	6439808	25	-1.0673	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2681	16	6421145	6590118	146	-0.7712	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.QG.A5Z1	16	6438351	6682150	218	-0.8786	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A022	16	6456558	6478897	20	-0.8243	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3518	16	6463662	6473196	11	-0.7527	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.QL.A97D	16	6464893	6698817	206	-1.2684	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.4749	16	6464893	6892506	364	-1.0957	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3818	16	6466782	6561229	67	-0.9256	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6781	16	6469279	6978845	403	-0.6759	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6644	16	6472751	6488115	10	-0.5594	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28F	16	6472751	6538985	42	-0.5495	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3660	16	6473196	6622948	123	-0.9907	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.QG.A5YX	16	6481558	6579978	75	-1.3161	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3842	16	6481606	6653777	153	-0.6954	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3726	16	6485237	6681183	184	-1.001	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3848	16	6487548	6504822	15	-0.6512	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4615	16	6489158	6538985	32	-0.5783	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6536	16	6489462	6654899	152	-0.7111	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3664	16	6489462	6868510	335	-0.8749	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3893	16	6496332	6610702	97	-0.516	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.4752	16	6496332	6833885	312	-0.5497	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.4745	16	6502764	6611882	99	-0.9134	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DY.A1DG	16	6502764	6697124	180	-0.6054	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AD.6899	16	6502764	6792418	265	-1.2055	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3518	16	6508154	6531393	11	-0.7325	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.5654	16	6508154	6654632	138	-0.96	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A01V	16	6508154	6868510	323	-0.8471	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2679	16	6512137	6619914	92	-0.8912	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AU.3779	16	6512137	6733692	198	-0.9743	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CI.6623	16	6516904	6782676	250	-0.8313	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3848	16	6516904	7012135	426	-0.9392	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.SS.A7HO	16	6520152	6557002	30	-0.8344	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.F5.6864	16	6520152	6699260	170	-0.5549	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6782	16	6520152	6717141	183	-0.9812	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A1D9	16	6523141	6561898	33	-0.9053	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6314	16	6523141	6796839	257	-0.8332	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.5M.AAT4	16	6531393	6846270	305	-1.2796	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6323	16	6534368	6618259	83	-0.5319	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.4015	16	6534368	6668587	141	-0.6083	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.4951	16	6534368	6747138	200	-0.6319	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6534935	6552164	16	-0.5689	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A022	16	6538985	6583487	47	-0.7329	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6653	16	6538985	6588518	58	-0.7907	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.6655	16	6547043	6697561	158	-0.5268	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3742	16	6550399	6989148	391	-0.7451	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6552266	6580460	25	-1.0555	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2675	16	6554252	6681183	131	-0.7431	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.QG.A5YV	16	6554252	6737911	175	-0.9929	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3966	16	6556584	6654899	103	-0.566	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5913	16	6561229	6604181	49	-0.685	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3518	16	6566663	6859491	272	-0.8509	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6512	16	6572048	6643365	73	-0.6575	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A01R	16	6572048	6781829	208	-0.7075	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6748	16	6581765	6619914	38	-1.2234	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4615	16	6585645	6719892	134	-0.9062	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.5860	16	6586058	6668587	88	-0.5828	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.5862	16	6587303	6675579	87	-1.2298	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.2689	16	6590118	6816350	219	-0.5149	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6653	16	6591470	6636604	34	-0.9125	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3592	16	6595897	6606587	12	-0.6237	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6509	16	6595897	6685321	93	-0.9374	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3866	16	6600987	6927911	282	-0.6877	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3592	16	6607677	6692595	81	-1.0419	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.2693	16	6607677	6968728	319	-0.6539	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3885	16	6609562	6699260	87	-0.5754	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.6155	16	6609562	7161646	448	-0.96	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A022	16	6611882	6699354	86	-0.844	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3896	16	6611882	6756337	133	-0.768	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.F4.6808	16	6618259	6758094	136	-0.766	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6619914	6658686	46	-0.7936	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6748	16	6621231	6627458	7	-0.567	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.5656	16	6621231	6698817	81	-0.7741	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.4107	16	6621582	6777524	151	-1.1471	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.5861	16	6623078	6916450	261	-0.7263	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4614	16	6626498	6632887	5	-0.9132	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3543	16	6626498	6706075	80	-1.1542	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3898	16	6627458	6654899	37	-0.5615	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6644	16	6627458	6731057	99	-0.5367	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6648	16	6635105	6683074	64	-1.2017	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6751	16	6640693	6763792	126	-0.7044	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.F4.6570	16	6640693	6875403	214	-0.5527	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6512	16	6644323	6693006	55	-1.0846	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3713	16	6646972	6827915	183	-0.5442	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.NH.A50V	16	6649342	6950106	259	-0.6145	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A03F	16	6653898	6859491	181	-0.7855	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2686	16	6654481	6699354	43	-0.9606	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3966	16	6658311	6846270	175	-1.2567	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.SS.A7HO	16	6663391	6739583	68	-0.9073	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.BM.6198	16	6665696	6739583	63	-0.54775	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6323	16	6666819	6692595	25	-0.5804	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6533	16	6666819	7033747	295	-0.7344	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6668587	6675579	7	-1.1583	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.5654	16	6668587	6985996	267	-0.7232	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.5860	16	6670612	6792418	109	-1.125	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3693	16	6670612	7081961	314	-1.052	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4616	16	6670857	6673351	4	-0.7777	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3971	16	6672717	7047356	295	-0.559	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A01Z	16	6680425	6911209	194	-0.9378	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AD.A5EK	16	6685321	6809810	113	-1.2959	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3679	16	6692595	6835413	137	-1.1113	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6883	16	6693006	6711164	14	-0.6618	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6748	16	6699260	6828219	128	-0.5331	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6163	16	6706075	6737682	27	-0.5663	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.4745	16	6708811	7207909	407	-1.0042	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5913	16	6710940	6931013	190	-0.6678	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G5.6233	16	6711164	6778611	64	-1.3009	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3881	16	6715195	6892506	147	-0.8584	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28A	16	6716875	6778689	62	-0.8477	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.5656	16	6723881	6755600	27	-0.7188	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6536	16	6730940	6734597	5	-0.774	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G5.6572	16	6730940	6793932	64	-0.7257	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6644	16	6733692	6777524	47	-1.0241	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3660	16	6733692	6792418	61	-1.1595	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.5541	16	6733692	6868285	120	-0.8157	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6512	16	6735136	6778689	47	-0.764	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6163	16	6737701	6782676	51	-1.1749	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.A56K	16	6737701	6876540	121	-1.0354	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6606	16	6744218	6934939	168	-1.2518	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.5M.AAT5	16	6744218	6985996	211	-0.8457	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28F	16	6746744	6797814	57	-0.6548	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3955	16	6746744	6844991	103	-0.6962	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6536	16	6749545	6864818	103	-0.666	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3898	16	6756337	6859491	91	-0.6909	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2681	16	6756395	6817374	70	-0.7241	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.6154	16	6761164	6905071	122	-0.673	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.A56N	16	6766823	7073998	220	-0.8	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3875	16	6768476	6773807	4	-1.1711	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3685	16	6773807	6931013	131	-0.8001	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6644	16	6778199	6792418	14	-0.6051	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.4107	16	6778199	6898605	96	-0.6026	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3956	16	6778199	6931013	127	-0.6377	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3893	16	6778779	6840764	60	-0.5739	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6169	16	6778779	7012471	180	-0.8697	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.6163	16	6782735	6905071	97	-0.5786	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6513	16	6789365	6800960	12	-0.6807	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3821	16	6789365	6817374	38	-0.8656	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3877	16	6789365	6833885	48	-0.5505	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6882	16	6789365	7560979	644	-0.6908	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A022	16	6793932	6891497	72	-0.5998	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3660	16	6793932	6999202	159	-0.6486	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28H	16	6796803	6813911	29	-0.6328	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5916	16	6802434	6809810	11	-0.639	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	6808156	6846270	35	-0.6383	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3602	16	6810811	6978473	132	-0.749	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6513	16	6811870	6814458	8	-0.6254	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.4951	16	6812291	6948174	96	-0.681	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.4N.A93T	16	6813670	7052773	162	-0.6948	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5916	16	6815337	6858922	22	-0.6457	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.5539	16	6827915	6846270	11	-0.834	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.F5.6464	16	6833885	6888834	26	-1.0932	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.F5.6863	16	6846270	6865107	5	-1.0441	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.SS.A7HO	16	6858922	7183344	246	-0.9221	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3818	16	6859491	7001405	110	-0.8167	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6747	16	6859491	7007858	114	-0.7659	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.7002	16	6867750	7170958	237	-1.2074	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.QL.A97D	16	6868510	7147014	200	-1.1206	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6746	16	6873787	7036047	123	-0.9373	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6294	16	6875403	6925780	37	-0.8398	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.A56K	16	6876854	7026211	112	-0.5385	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EF.5830	16	6898513	7337939	377	-0.7531	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.4107	16	6901397	6926319	16	-0.5149	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6512	16	6901397	6969670	65	-0.9448	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AD.A5EK	16	6911209	7039420	88	-1.1442	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5916	16	6916450	7153263	170	-0.5846	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28F	16	6927911	6974618	49	-0.6473	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2683	16	6930541	7133247	136	-0.8193	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DC.6154	16	6934453	7036047	71	-0.7005	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.6598	16	6949725	7069272	76	-1.0849	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3695	16	6957156	6958175	3	-1.1203	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4308	16	6959036	7052773	60	-1.0059	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3841	16	6961617	7495185	449	-0.8136	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.2681	16	6978845	7052773	37	-0.7138	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.5348	16	6984780	7461947	389	-1.1803	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.EI.6513	16	7007858	7066368	28	-0.826	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6535	16	7010775	7052773	22	-0.9796	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A28F	16	7025027	7146476	82	-0.5433	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.5862	16	7034267	7435625	335	-1.0549	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.DM.A1DB	16	7052773	9474185	1581	-0.8008	SMALL-LOSS	FOCAL	9	"ABAT,C16orf72,CARHSP1,METTL22,PMM2,RBFOX1,TMEM114,TMEM186,USP7"
TCGA.G4.6294	16	7066368	7093810	21	-0.8063	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AF.5654	16	7092427	7167534	81	-0.6593	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AH.6643	16	7092582	7122300	29	-0.859	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AG.3742	16	7095569	7227121	128	-0.6947	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.5913	16	7112695	7154180	50	-0.6557	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	7143814	7146376	9	-0.6315	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3660	16	7147014	7251930	115	-0.7488	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	7149574	7158725	12	-0.74825	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3488	16	7152830	7552276	374	-0.5502	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.A6.6653	16	7187945	7197485	13	-0.691	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	7242577	7243311	5	-0.99205	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	7295632	7415783	77	-0.7434	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	7298198	7312509	17	-0.67005	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.G4.6294	16	7366368	7379338	9	-0.8026	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3664	16	7366940	7690070	285	-0.937	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.A02Y	16	7416597	7730364	302	-0.7795	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CM.4752	16	7478256	7491989	18	-0.5343	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AZ.4682	16	7480867	7494116	14	-0.6474	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.D5.6923	16	7551705	7628162	81	-0.5474	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.CK.6746	16	7567127	7729220	159	-0.9739	SMALL-LOSS	FOCAL	1	RBFOX1
TCGA.AA.3850	16	7780972	7797127	17	-0.68085	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	16	7906044	7908023	5	-1.0199	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	16	8281239	8329677	41	-0.59105	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	16	8328517	8329677	7	-0.7294	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A016.01A	16	8735924	8739883	4	-0.9864	SMALL-LOSS	FOCAL	1	METTL22
TCGA.AA.A00N.01A	16	8895604	8905431	5	-1.0846	SMALL-LOSS	FOCAL	1	PMM2
TCGA.DM.A1D8	16	8906957	9031103	49	-1.2282	SMALL-LOSS	FOCAL	3	"CARHSP1,PMM2,USP7"
TCGA.AF.2692	16	9085747	9101608	7	-1.0432	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2692	16	9102387	9150890	11	-0.55	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	9186752	9210508	3	-1.2615	SMALL-LOSS	FOCAL	1	C16orf72
TCGA.AA.3872	16	9562367	9562762	4	-0.6075	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6883	16	9821372	10339140	358	-0.659	SMALL-LOSS	FOCAL	1	GRIN2A
TCGA.AA.3941	16	9849681	9853284	9	-1.1775	SMALL-LOSS	FOCAL	1	GRIN2A
TCGA.AA.3955	16	10797277	10811686	4	-0.8589	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	16	10798646	10818807	5	-0.5187	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	10840948	10911908	15	-1.0359	SMALL-LOSS	FOCAL	2	"NUBP1,TVP23A"
TCGA.DM.A1HB	16	11012549	11012733	3	-0.7647	SMALL-LOSS	FOCAL	1	CIITA
TCGA.AA.3967.01A	16	11056262	11217552	19	-0.5253	SMALL-LOSS	FOCAL	1	CLEC16A
TCGA.AA.A010.01A	16	11348648	11876090	44	-1.087	SMALL-LOSS	FOCAL	10	"LITAF,PRM1,PRM2,PRM3,RMI2,SNN,SOCS1,TNP2,TXNDC11,ZC3H7A"
TCGA.AG.4009.01A	16	11650329	11777962	4	-0.6803	SMALL-LOSS	FOCAL	3	"LITAF,SNN,TXNDC11"
TCGA.AA.A00N.01A	16	11769915	11944089	39	-0.7719	SMALL-LOSS	FOCAL	4	"RSL1D1,SNN,TXNDC11,ZC3H7A"
TCGA.CK.5914.01A	16	11935504	11944089	4	-0.7748	SMALL-LOSS	FOCAL	1	RSL1D1
TCGA.AA.A00N.01A	16	11981395	12093085	10	-0.7108	SMALL-LOSS	FOCAL	3	"GSPT1,SNX29,TNFRSF17"
TCGA.A6.6780	16	11988302	12080541	23	-0.5703	SMALL-LOSS	FOCAL	3	"GSPT1,SNX29,TNFRSF17"
TCGA.5M.AAT4	16	12658619	12670587	13	-0.8571	SMALL-LOSS	FOCAL	1	SNX29
TCGA.G4.6322	16	12730957	12871638	75	-0.9711	SMALL-LOSS	FOCAL	1	CPPED1
TCGA.AD.6965	16	13128257	13128603	3	-0.8904	SMALL-LOSS	FOCAL	1	SHISA9
TCGA.AA.3858	16	13565214	13588334	10	-0.9775	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	16	14180979	14202187	4	-0.5522	SMALL-LOSS	FOCAL	1	MKL2
TCGA.CK.5914.01A	16	14711387	14723392	4	-0.8019	SMALL-LOSS	FOCAL	1	PARN
TCGA.AG.4009.01A	16	14932255	14947740	6	-0.6192	SMALL-LOSS	FOCAL	1	NOMO1
TCGA.DM.A28M.01A	16	14938484	14958834	11	-0.8957	SMALL-LOSS	FOCAL	1	NOMO1
TCGA.AA.A010.01A	16	14966042	15068967	14	-1.0304	SMALL-LOSS	FOCAL	3	"NOMO1,NPIPA1,PDXDC1"
TCGA.AA.A00N.01A	16	15091590	15126666	16	-0.9114	SMALL-LOSS	FOCAL	1	PDXDC1
TCGA.A6.3808.01A	16	15102589	15155551	24	-0.6783	SMALL-LOSS	FOCAL	3	"NTAN1,PDXDC1,RRN3"
TCGA.AA.A00N.01A	16	15131837	15173823	18	-1.1674	SMALL-LOSS	FOCAL	3	"NTAN1,PDXDC1,RRN3"
TCGA.AG.A01W.01A	16	15668627	15720526	12	-0.5336	SMALL-LOSS	FOCAL	2	"C16orf45,KIAA0430"
TCGA.AA.A00N.01A	16	15714277	15761096	15	-0.9266	SMALL-LOSS	FOCAL	2	"KIAA0430,NDE1"
TCGA.AA.A010.01A	16	15714277	15761096	15	-0.5694	SMALL-LOSS	FOCAL	2	"KIAA0430,NDE1"
TCGA.AG.4009.01A	16	15724147	15729836	6	-0.5582	SMALL-LOSS	FOCAL	1	KIAA0430
TCGA.AG.A01W.01A	16	15733881	15761852	15	-0.6772	SMALL-LOSS	FOCAL	2	"KIAA0430,NDE1"
TCGA.AA.3861.01A	16	15790525	16126900	49	-0.67	SMALL-LOSS	FOCAL	4	"ABCC1,FOPNL,MYH11,NDE1"
TCGA.AA.A010.01A	16	15931713	15977855	5	-0.5868	SMALL-LOSS	FOCAL	2	"FOPNL,MYH11"
TCGA.CM.6163	16	16052972	16103231	27	-0.5952	SMALL-LOSS	FOCAL	1	ABCC1
TCGA.AF.2691	16	16052972	16140509	44	-0.527	SMALL-LOSS	FOCAL	1	ABCC1
TCGA.A6.6653	16	16084203	16096132	5	-1.267	SMALL-LOSS	FOCAL	1	ABCC1
TCGA.AG.A01W.01A	16	16156009	16253275	30	-0.7448	SMALL-LOSS	FOCAL	2	"ABCC1,ABCC6"
TCGA.A6.3808.01A	16	16255248	18870940	99	-0.7101	SMALL-LOSS	FOCAL	9	"ABCC6,ARL6IP1,NOMO2,NOMO3,NPIPA7,NPIPA8,RPS15A,SMG1,XYLT1"
TCGA.AG.4009.01A	16	16315377	16336971	3	-0.8063	SMALL-LOSS	FOCAL	2	"ABCC6,NOMO3"
TCGA.DM.A28M.01A	16	16336971	18794389	39	-0.7206	SMALL-LOSS	FOCAL	6	"NOMO2,NOMO3,NPIPA7,NPIPA8,RPS15A,XYLT1"
TCGA.AA.3982	16	17123846	17125815	3	-1.2433	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	16	18562710	18809985	12	-0.8828	SMALL-LOSS	FOCAL	3	"ARL6IP1,NOMO2,RPS15A"
TCGA.AG.3909.01A	16	19083242	19089353	5	-0.8771	SMALL-LOSS	FOCAL	1	COQ7
TCGA.CK.5914.01A	16	19083242	19132077	10	-0.6474	SMALL-LOSS	FOCAL	2	"COQ7,ITPRIPL2"
TCGA.AG.4009.01A	16	19125746	19184705	3	-0.8581	SMALL-LOSS	FOCAL	2	"ITPRIPL2,SYT17"
TCGA.AG.A01W.01A	16	19649189	19780620	9	-0.7018	SMALL-LOSS	FOCAL	3	"C16orf62,IQCK,KNOP1"
TCGA.A6.6653	16	20019540	20076729	26	-0.6775	SMALL-LOSS	FOCAL	1	GPR139
TCGA.AA.A00N.01A	16	20807644	20814699	9	-0.6335	SMALL-LOSS	FOCAL	2	"ACSM3,ERI2"
TCGA.AG.4009.01A	16	20981062	21011559	9	-0.6795	SMALL-LOSS	FOCAL	1	DNAH3
TCGA.AA.A00N.01A	16	20986508	21014377	9	-0.9644	SMALL-LOSS	FOCAL	1	DNAH3
TCGA.AA.A01Q.01A	16	20990603	20999018	5	-0.5682	SMALL-LOSS	FOCAL	1	DNAH3
TCGA.AA.A00N.01A	16	21138958	21185323	11	-0.6098	SMALL-LOSS	FOCAL	2	"DNAH3,TMEM159"
TCGA.AG.3909.01A	16	21281059	21666501	18	-0.6252	SMALL-LOSS	FOCAL	4	"CRYM,IGSF6,METTL9,NPIPB3"
TCGA.CK.5914.01A	16	21286808	21666501	17	-0.5596	SMALL-LOSS	FOCAL	4	"CRYM,IGSF6,METTL9,NPIPB3"
TCGA.AA.A01Q.01A	16	21623954	21666501	10	-1.0437	SMALL-LOSS	FOCAL	2	"IGSF6,METTL9"
TCGA.AA.A010.01A	16	21973730	22006507	13	-1.2126	SMALL-LOSS	FOCAL	2	"PDZD9,UQCRC2"
TCGA.AA.A00N.01A	16	22330097	22376171	12	-0.8058	SMALL-LOSS	FOCAL	2	"CDR2,POLR3E"
TCGA.AG.3909.01A	16	22335628	22344907	6	-0.7348	SMALL-LOSS	FOCAL	1	POLR3E
TCGA.AA.3518	16	22625635	22704519	9	-0.7061	SMALL-LOSS	FOCAL	0	None
TCGA.AF.6655	16	22625635	22704519	10	-0.631	SMALL-LOSS	FOCAL	0	None
TCGA.AH.6544	16	22625635	22720365	15	-0.59	SMALL-LOSS	FOCAL	0	None
TCGA.AY.6196	16	22626346	22698857	7	-0.5532	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6648	16	23281195	23645009	71	-0.7508	SMALL-LOSS	FOCAL	7	"COG7,EARS2,GGA2,NDUFAB1,PALB2,SCNN1B,UBFD1"
TCGA.AG.3909.01A	16	23563469	23598470	10	-0.7819	SMALL-LOSS	FOCAL	3	"EARS2,NDUFAB1,UBFD1"
TCGA.CK.5914.01A	16	23563469	23649134	23	-0.6224	SMALL-LOSS	FOCAL	4	"EARS2,NDUFAB1,PALB2,UBFD1"
TCGA.AA.A00N.01A	16	23607406	23649134	12	-0.7434	SMALL-LOSS	FOCAL	2	"NDUFAB1,PALB2"
TCGA.AG.4009.01A	16	24104105	24135104	4	-0.6057	SMALL-LOSS	FOCAL	1	PRKCB
TCGA.AG.3909.01A	16	24551896	24741556	16	-0.731	SMALL-LOSS	FOCAL	2	"RBBP6,TNRC6A"
TCGA.AG.4009.01A	16	24560255	24741556	14	-0.8634	SMALL-LOSS	FOCAL	2	"RBBP6,TNRC6A"
TCGA.CK.5914.01A	16	24579064	24741556	4	-0.9902	SMALL-LOSS	FOCAL	2	"RBBP6,TNRC6A"
TCGA.AG.A00C.01A	16	24918299	24950688	9	-0.5292	SMALL-LOSS	FOCAL	2	"ARHGAP17,SLC5A11"
TCGA.AA.A00N.01A	16	25251086	25703727	8	-0.9529	SMALL-LOSS	FOCAL	2	"HS3ST4,ZKSCAN2"
TCGA.AG.4009.01A	16	25255059	25268013	6	-0.5631	SMALL-LOSS	FOCAL	1	ZKSCAN2
TCGA.AA.3982	16	25866025	25871385	8	-0.8549	SMALL-LOSS	FOCAL	1	HS3ST4
TCGA.AA.3941	16	26257750	26267274	7	-1.2448	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	16	26563606	26567527	10	-0.5345	SMALL-LOSS	FOCAL	0	None
TCGA.CA.5254	16	26808122	27219340	212	-0.595	SMALL-LOSS	FOCAL	2	"C16orf82,KDM8"
TCGA.AA.A01Q.01A	16	27224855	27789826	84	-1.0099	SMALL-LOSS	FOCAL	6	"GTF3C1,IL21R,IL4R,KDM8,KIAA0556,NSMCE1"
TCGA.AG.4009.01A	16	28328692	28331349	3	-1.0136	SMALL-LOSS	FOCAL	1	SBK1
TCGA.AA.A00N.01A	16	28603302	28834542	11	-0.6601	SMALL-LOSS	FOCAL	6	"ATXN2L,EIF3C,EIF3CL,NPIPB9,SULT1A1,SULT1A2"
TCGA.CK.5914.01A	16	28631333	28840668	9	-0.6379	SMALL-LOSS	FOCAL	5	"ATXN2L,EIF3C,EIF3CL,NPIPB9,SULT1A1"
TCGA.AG.3909.01A	16	28836605	28854278	15	-0.8891	SMALL-LOSS	FOCAL	2	"ATXN2L,TUFM"
TCGA.AF.3914.01A	16	28880272	28895856	12	-0.8532	SMALL-LOSS	FOCAL	2	"ATP2A1,SH2B1"
TCGA.5M.AATA	16	28975711	29345439	51	-0.5932	SMALL-LOSS	FOCAL	3	"LAT,NFATC2IP,SPNS1"
TCGA.AA.3509.01A	16	29680053	29690429	5	-0.9874	SMALL-LOSS	FOCAL	1	SPN
TCGA.AG.A01W.01A	16	29728336	29766543	20	-0.7077	SMALL-LOSS	FOCAL	1	C16orf54
TCGA.AG.A01W.01A	16	29795532	29830565	18	-0.6802	SMALL-LOSS	FOCAL	4	"KIF22,MAZ,PAGR1,PRRT2"
TCGA.AG.4009.01A	16	29808187	29816138	8	-0.8709	SMALL-LOSS	FOCAL	1	KIF22
TCGA.AA.3967.01A	16	29814723	29819874	6	-0.6026	SMALL-LOSS	FOCAL	2	"KIF22,MAZ"
TCGA.AA.A010.01A	16	29841823	29855802	8	-0.5581	SMALL-LOSS	FOCAL	1	MVP
TCGA.AG.A008.01A	16	29846976	29847995	2	-1.129	SMALL-LOSS	FOCAL	1	MVP
TCGA.AA.A01Q.01A	16	29870473	29891184	12	-0.6346	SMALL-LOSS	FOCAL	2	"CDIPT,SEZ6L2"
TCGA.AG.3909.01A	16	29979308	29997559	11	-1.0078	SMALL-LOSS	FOCAL	2	"TAOK2,TMEM219"
TCGA.AA.A010.01A	16	30092526	30129633	21	-1.0043	SMALL-LOSS	FOCAL	5	"GDPD3,MAPK3,PPP4C,TBX6,YPEL3"
TCGA.AA.A010.01A	16	30206008	30364269	5	-0.9112	SMALL-LOSS	FOCAL	5	"CD2BP2,SLX1A,SLX1B,SULT1A3,SULT1A4"
TCGA.AF.3914.01A	16	30376192	30435545	19	-0.6988	SMALL-LOSS	FOCAL	6	"DCTPP1,MYLPF,SEPT1,TBC1D10B,ZNF48,ZNF771"
TCGA.AG.A01W.01A	16	30397865	30440268	20	-0.7092	SMALL-LOSS	FOCAL	3	"DCTPP1,ZNF48,ZNF771"
TCGA.AA.A010.01A	16	30510345	30545518	16	-0.7036	SMALL-LOSS	FOCAL	3	"ITGAL,ZNF747,ZNF768"
TCGA.AG.4009.01A	16	30528909	30583394	12	-0.7397	SMALL-LOSS	FOCAL	5	"ITGAL,ZNF688,ZNF747,ZNF764,ZNF768"
TCGA.AG.A01W.01A	16	30628288	30669880	23	-0.6154	SMALL-LOSS	FOCAL	1	PRR14
TCGA.AG.4009.01A	16	30664002	30712073	12	-0.8619	SMALL-LOSS	FOCAL	4	"FBRS,LOC730183,PRR14,SRCAP"
TCGA.AF.3914.01A	16	30664002	30715374	18	-1.0024	SMALL-LOSS	FOCAL	4	"FBRS,LOC730183,PRR14,SRCAP"
TCGA.AA.A010.01A	16	30712073	30727340	11	-0.9873	SMALL-LOSS	FOCAL	1	SRCAP
TCGA.AG.3909.01A	16	30762389	30793572	24	-0.5322	SMALL-LOSS	FOCAL	4	"C16orf93,PHKG2,RNF40,ZNF629"
TCGA.AG.4009.01A	16	30785207	30958043	15	-0.5769	SMALL-LOSS	FOCAL	5	"BCL7C,CTF1,FBXL19,RNF40,ZNF629"
TCGA.AF.3914.01A	16	30785207	31012816	46	-0.7849	SMALL-LOSS	FOCAL	9	"BCL7C,CTF1,FBXL19,HSD3B7,ORAI3,RNF40,SETD1A,STX1B,ZNF629"
TCGA.AG.A01W.01A	16	30882217	30890164	8	-1.0405	SMALL-LOSS	FOCAL	1	BCL7C
TCGA.AG.3909.01A	16	30958043	30974704	6	-0.9134	SMALL-LOSS	FOCAL	3	"FBXL19,ORAI3,SETD1A"
TCGA.AA.A01Q.01A	16	30964467	30974704	5	-1.1869	SMALL-LOSS	FOCAL	2	"ORAI3,SETD1A"
TCGA.AG.4009.01A	16	30964467	30991768	13	-1.2872	SMALL-LOSS	FOCAL	2	"ORAI3,SETD1A"
TCGA.AA.A01Q.01A	16	30990424	31012816	17	-1.1886	SMALL-LOSS	FOCAL	3	"HSD3B7,SETD1A,STX1B"
TCGA.AF.3914.01A	16	31097233	31161238	32	-0.6782	SMALL-LOSS	FOCAL	6	"BCKDK,KAT8,PRSS36,PRSS53,PRSS8,VKORC1"
TCGA.AF.3914.01A	16	31234099	31271298	3	-1.0034	SMALL-LOSS	FOCAL	2	"ITGAM,TRIM72"
TCGA.AG.A01W.01A	16	31240016	31245632	5	-0.7123	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	16	31329167	31343259	14	-0.6584	SMALL-LOSS	FOCAL	1	ITGAM
TCGA.AA.3860	16	31332654	31421416	21	-0.7279	SMALL-LOSS	FOCAL	3	"ITGAD,ITGAM,ITGAX"
TCGA.AA.A010.01A	16	31418799	31424107	6	-0.9015	SMALL-LOSS	FOCAL	1	ITGAD
TCGA.AG.4009.01A	16	31427799	31470809	8	-0.805	SMALL-LOSS	FOCAL	4	"ARMC5,COX6A2,ITGAD,ZNF843"
TCGA.AG.3909.01A	16	31470809	31539761	29	-0.5762	SMALL-LOSS	FOCAL	5	"AHSP,ARMC5,C16orf58,SLC5A2,TGFB1I1"
TCGA.AG.4009.01A	16	31487285	31497463	6	-0.7453	SMALL-LOSS	FOCAL	2	"SLC5A2,TGFB1I1"
TCGA.F4.6461	16	33940199	35205716	97	-0.6256	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3726	16	34202672	35139484	94	-0.8926	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6535	16	34383086	35205716	72	-0.7235	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3972	16	34411377	34757070	38	-0.6243	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3870	16	34479680	34757070	29	-0.7657	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	16	46649846	46731320	27	-0.6087	SMALL-LOSS	FOCAL	3	"ORC6,SHCBP1,VPS35"
TCGA.AG.3909.01A	16	46694414	46731320	21	-0.7596	SMALL-LOSS	FOCAL	2	"ORC6,VPS35"
TCGA.AG.4009.01A	16	46694414	46746541	25	-0.9716	SMALL-LOSS	FOCAL	3	"MYLK3,ORC6,VPS35"
TCGA.AG.4009.01A	16	46990889	47196402	18	-0.6724	SMALL-LOSS	FOCAL	3	"DNAJA2,ITFG1,NETO2"
TCGA.CK.5914.01A	16	46998496	47005736	5	-0.788	SMALL-LOSS	FOCAL	1	DNAJA2
TCGA.AA.A010.01A	16	48381960	49314786	15	-0.7249	SMALL-LOSS	FOCAL	4	"CBLN1,LONP2,N4BP1,SIAH1"
TCGA.CK.5914.01A	16	48385475	48399256	5	-0.8744	SMALL-LOSS	FOCAL	2	"LONP2,SIAH1"
TCGA.AA.A01Q.01A	16	49525100	49660037	4	-0.8333	SMALL-LOSS	FOCAL	1	ZNF423
TCGA.AA.A010.01A	16	50138833	50263031	10	-0.9799	SMALL-LOSS	FOCAL	2	"HEATR3,PAPD5"
TCGA.AA.A01Q.01A	16	50258541	50334578	9	-0.6116	SMALL-LOSS	FOCAL	2	"ADCY7,PAPD5"
TCGA.AA.A010.01A	16	50348877	50373835	14	-0.6484	SMALL-LOSS	FOCAL	2	"ADCY7,BRD7"
TCGA.AA.A010.01A	16	50701838	50753781	13	-0.5805	SMALL-LOSS	FOCAL	2	"NOD2,SNX20"
TCGA.AG.4009.01A	16	50707300	50810039	19	-0.6741	SMALL-LOSS	FOCAL	3	"CYLD,NOD2,SNX20"
TCGA.AA.A010.01A	16	50756483	50811684	10	-1.3056	SMALL-LOSS	FOCAL	2	"CYLD,NOD2"
TCGA.AA.3864	16	50803755	50831255	6	-0.7513	SMALL-LOSS	FOCAL	1	CYLD
TCGA.AA.A010.01A	16	50813559	50820710	5	-0.5441	SMALL-LOSS	FOCAL	1	CYLD
TCGA.AG.4009.01A	16	51170995	51173087	3	-1.2119	SMALL-LOSS	FOCAL	1	SALL1
TCGA.AA.A00N.01A	16	51170995	51185038	4	-1.2679	SMALL-LOSS	FOCAL	1	SALL1
TCGA.AA.3850	16	51698585	52635329	395	-0.51985	SMALL-LOSS	FOCAL	2	"C16orf97,TOX3"
TCGA.AA.3982	16	51760230	51774110	11	-1.1106	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	53513000	53674890	18	-1.1162	SMALL-LOSS	FOCAL	3	"AKTIP,RBL2,RPGRIP1L"
TCGA.AG.4009.01A	16	53526285	55525675	57	-0.543	SMALL-LOSS	FOCAL	7	"AKTIP,FTO,IRX3,IRX5,IRX6,MMP2,RPGRIP1L"
TCGA.EI.6508	16	53739998	54090588	154	-0.7969	SMALL-LOSS	FOCAL	1	FTO
TCGA.AA.A00N.01A	16	54145644	55571419	36	-0.5546	SMALL-LOSS	FOCAL	6	"FTO,IRX3,IRX5,IRX6,LPCAT2,MMP2"
TCGA.AF.3914.01A	16	54317579	54966363	5	-1.2626	SMALL-LOSS	FOCAL	2	"IRX3,IRX5"
TCGA.AG.A01W.01A	16	54404270	54411739	4	-0.7745	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	16	54410446	54419631	4	-1.26005	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6137	16	55227613	55231195	4	-0.9483	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	16	55712480	55738914	9	-0.708	SMALL-LOSS	FOCAL	1	SLC6A2
TCGA.AA.A01Q.01A	16	56362511	56388740	7	-1.0615	SMALL-LOSS	FOCAL	1	GNAO1
TCGA.AG.3909.01A	16	56374699	56388740	4	-0.6309	SMALL-LOSS	FOCAL	1	GNAO1
TCGA.AG.4009.01A	16	56435603	56473517	11	-0.6006	SMALL-LOSS	FOCAL	2	"AMFR,NUDT21"
TCGA.AA.A00N.01A	16	56624701	56717814	28	-1.2509	SMALL-LOSS	FOCAL	10	"MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3"
TCGA.AG.3909.01A	16	56642510	56717814	27	-0.7191	SMALL-LOSS	FOCAL	9	"MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A"
TCGA.AA.A00N.01A	16	56969086	56976991	6	-1.2832	SMALL-LOSS	FOCAL	1	HERPUD1
TCGA.AA.A01Q.01A	16	57069962	57080422	9	-0.7901	SMALL-LOSS	FOCAL	1	NLRC5
TCGA.AG.4009.01A	16	57108454	57144603	9	-0.6	SMALL-LOSS	FOCAL	2	"CPNE2,NLRC5"
TCGA.AA.A00N.01A	16	57197846	57286031	25	-1.0803	SMALL-LOSS	FOCAL	3	"ARL2BP,FAM192A,RSPRY1"
TCGA.AA.A010.01A	16	57200976	57272738	18	-0.5642	SMALL-LOSS	FOCAL	2	"FAM192A,RSPRY1"
TCGA.AG.4009.01A	16	57238592	57282402	16	-0.7864	SMALL-LOSS	FOCAL	2	"ARL2BP,RSPRY1"
TCGA.AA.A01Q.01A	16	57279936	57286031	5	-0.784	SMALL-LOSS	FOCAL	1	ARL2BP
TCGA.AG.3909.01A	16	57279936	57295781	8	-0.6946	SMALL-LOSS	FOCAL	2	"ARL2BP,PLLP"
TCGA.AG.3909.01A	16	57448943	57554928	37	-0.5631	SMALL-LOSS	FOCAL	6	"CCDC102A,CCL17,CIAPIN1,COQ9,DOK4,POLR2C"
TCGA.AA.A00N.01A	16	57464111	57596236	38	-0.693	SMALL-LOSS	FOCAL	6	"ADGRG5,CCDC102A,CIAPIN1,COQ9,DOK4,POLR2C"
TCGA.AA.A010.01A	16	57499813	57559761	18	-1.2707	SMALL-LOSS	FOCAL	3	"CCDC102A,DOK4,POLR2C"
TCGA.AG.A00C.01A	16	57598899	57609298	7	-0.6689	SMALL-LOSS	FOCAL	1	ADGRG5
TCGA.AA.A01Q.01A	16	57684131	57707186	15	-0.8125	SMALL-LOSS	FOCAL	2	"ADGRG1,ADGRG3"
TCGA.AG.A015.01A	16	57752209	57771089	9	-0.5527	SMALL-LOSS	FOCAL	2	"DRC7,KATNB1"
TCGA.AA.A010.01A	16	58010359	58054005	16	-1.1474	SMALL-LOSS	FOCAL	3	"TEPP,USB1,ZNF319"
TCGA.AG.4009.01A	16	58021226	58054005	9	-1.0446	SMALL-LOSS	FOCAL	3	"TEPP,USB1,ZNF319"
TCGA.AF.3914.01A	16	58021226	58074424	13	-0.951	SMALL-LOSS	FOCAL	4	"MMP15,TEPP,USB1,ZNF319"
TCGA.AG.4009.01A	16	58071324	58078873	8	-0.558	SMALL-LOSS	FOCAL	1	MMP15
TCGA.EI.6883	16	58414163	65913417	2329	-0.6832	SMALL-LOSS	FOCAL	9	"CDH11,CDH8,CNOT1,GINS3,GOT2,LOC729159,NDRG4,SETD6,SLC38A7"
TCGA.AA.A010.01A	16	58426458	58528791	5	-0.877	SMALL-LOSS	FOCAL	2	"GINS3,NDRG4"
TCGA.AG.4009.01A	16	58426458	58564100	22	-0.7683	SMALL-LOSS	FOCAL	4	"CNOT1,GINS3,NDRG4,SETD6"
TCGA.AF.3914.01A	16	58426458	58568003	24	-0.5239	SMALL-LOSS	FOCAL	4	"CNOT1,GINS3,NDRG4,SETD6"
TCGA.AG.3906.01A	16	58620412	58633098	5	-0.6596	SMALL-LOSS	FOCAL	1	CNOT1
TCGA.AG.4009.01A	16	58620412	58633098	5	-0.7694	SMALL-LOSS	FOCAL	1	CNOT1
TCGA.AA.3850	16	58886451	61740760	813	-0.70565	SMALL-LOSS	FOCAL	2	"CDH8,LOC729159"
TCGA.AG.3890	16	59356846	59364192	3	-1.1838	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	16	59591651	59592350	4	-1.2933	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1HA	16	59982968	60423898	123	-0.9375	SMALL-LOSS	FOCAL	1	LOC729159
TCGA.D5.6532	16	60566071	60574393	3	-0.7198	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	16	61763540	61792662	13	-0.55725	SMALL-LOSS	FOCAL	1	CDH8
TCGA.AZ.4315	16	62628709	62636794	13	-0.8527	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6932	16	62957787	63476323	158	-0.6824	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6322	16	65679447	65721617	18	-1.042	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	16	66084786	66085072	3	-1.033	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	16	66115075	66115590	3	-1.0362	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	16	66413191	66436536	11	-1.2776	SMALL-LOSS	FOCAL	1	CDH5
TCGA.AA.A00N.01A	16	66420675	66434673	9	-0.8584	SMALL-LOSS	FOCAL	1	CDH5
TCGA.AG.4009.01A	16	66423214	66436536	8	-0.9288	SMALL-LOSS	FOCAL	1	CDH5
TCGA.AA.A00N.01A	16	66562847	66570823	3	-0.6722	SMALL-LOSS	FOCAL	1	TK2
TCGA.AG.3909.01A	16	66575723	66613584	12	-1.1449	SMALL-LOSS	FOCAL	5	"CKLF,CKLF-CMTM1,CMTM1,CMTM2,TK2"
TCGA.AG.4009.01A	16	66610960	66657260	12	-1.1308	SMALL-LOSS	FOCAL	5	"CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4"
TCGA.AF.3914.01A	16	66610960	66819642	26	-0.6001	SMALL-LOSS	FOCAL	7	"CCDC79,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,DYNC1LI2"
TCGA.AA.A00N.01A	16	66612712	66819642	35	-0.9931	SMALL-LOSS	FOCAL	7	"CCDC79,CKLF-CMTM1,CMTM1,CMTM2,CMTM3,CMTM4,DYNC1LI2"
TCGA.AA.A010.01A	16	66620848	66646439	6	-0.7216	SMALL-LOSS	FOCAL	2	"CMTM2,CMTM3"
TCGA.CK.5914.01A	16	66788829	66861874	32	-0.8344	SMALL-LOSS	FOCAL	2	"CCDC79,NAE1"
TCGA.AA.3509.01A	16	66792652	66809034	7	-0.9357	SMALL-LOSS	FOCAL	1	CCDC79
TCGA.AA.A010.01A	16	66801942	66819642	7	-0.6738	SMALL-LOSS	FOCAL	1	CCDC79
TCGA.AG.3909.01A	16	66836861	66861874	17	-0.8557	SMALL-LOSS	FOCAL	1	NAE1
TCGA.AA.A00N.01A	16	66864685	66921157	10	-0.7101	SMALL-LOSS	FOCAL	3	"CA7,NAE1,PDP2"
TCGA.AA.A01Q.01A	16	66918170	67006788	38	-0.518	SMALL-LOSS	FOCAL	6	"CDH16,CES2,CES3,FAM96B,PDP2,RRAD"
TCGA.AF.3914.01A	16	66942258	66969309	21	-0.6014	SMALL-LOSS	FOCAL	4	"CDH16,CES2,FAM96B,RRAD"
TCGA.AA.A00N.01A	16	66955959	67035182	31	-0.5536	SMALL-LOSS	FOCAL	5	"CES2,CES3,CES4A,FAM96B,RRAD"
TCGA.AF.3914.01A	16	67036924	67070501	7	-0.8176	SMALL-LOSS	FOCAL	2	"CBFB,CES4A"
TCGA.AA.A00N.01A	16	67036924	67180118	25	-1.3054	SMALL-LOSS	FOCAL	3	"C16orf70,CBFB,CES4A"
TCGA.AF.3914.01A	16	67178142	67188545	7	-1.1787	SMALL-LOSS	FOCAL	3	"B3GNT9,C16orf70,TRADD"
TCGA.AG.4009.01A	16	67178142	67233082	35	-0.7997	SMALL-LOSS	FOCAL	10	"B3GNT9,C16orf70,E2F4,ELMO3,EXOC3L1,FBXL8,HSF4,KIAA0895L,NOL3,TRADD"
TCGA.AG.4009.01A	16	67286426	67331357	33	-0.9123	SMALL-LOSS	FOCAL	3	"KCTD19,PLEKHG4,SLC9A5"
TCGA.AG.4009.01A	16	67418756	67472395	14	-0.8344	SMALL-LOSS	FOCAL	5	"ATP6V0D1,HSD11B2,LRRC36,TPPP3,ZDHHC1"
TCGA.AG.4009.01A	16	67572298	67579247	11	-1.0134	SMALL-LOSS	FOCAL	1	FAM65A
TCGA.AA.A010.01A	16	67644696	67663250	8	-0.7324	SMALL-LOSS	FOCAL	1	CTCF
TCGA.A6.3808.01A	16	67660410	67763176	41	-1.077	SMALL-LOSS	FOCAL	8	"ACD,C16orf86,CTCF,ENKD1,GFOD2,PARD6A,RANBP10,RLTPR"
TCGA.AF.3914.01A	16	67679391	67697037	23	-1.1759	SMALL-LOSS	FOCAL	4	"ACD,ENKD1,PARD6A,RLTPR"
TCGA.AG.4009.01A	16	67685058	67698868	14	-1.1432	SMALL-LOSS	FOCAL	4	"ACD,ENKD1,PARD6A,RLTPR"
TCGA.AA.A00N.01A	16	67839284	67919577	37	-0.8628	SMALL-LOSS	FOCAL	7	"CENPT,EDC4,NRN1L,NUTF2,RANBP10,THAP11,TSNAXIP1"
TCGA.AA.A01Q.01A	16	67876489	67910729	7	-1.29	SMALL-LOSS	FOCAL	4	"CENPT,EDC4,NUTF2,THAP11"
TCGA.AG.3909.01A	16	67876489	67917459	14	-0.8564	SMALL-LOSS	FOCAL	4	"CENPT,EDC4,NUTF2,THAP11"
TCGA.AA.A01Q.01A	16	67911083	68026826	53	-0.6625	SMALL-LOSS	FOCAL	9	"CTRL,DPEP2,DPEP3,EDC4,LCAT,NRN1L,PSKH1,PSMB10,SLC12A4"
TCGA.AA.A00N.01A	16	67984838	68071890	26	-0.8967	SMALL-LOSS	FOCAL	6	"DDX28,DPEP2,DPEP3,DUS2,LOC100131303,SLC12A4"
TCGA.AA.A010.01A	16	67985688	68013492	15	-1.2227	SMALL-LOSS	FOCAL	2	"DPEP3,SLC12A4"
TCGA.AG.4009.01A	16	67995431	68026826	16	-0.764	SMALL-LOSS	FOCAL	3	"DPEP2,DPEP3,SLC12A4"
TCGA.AA.A010.01A	16	68013950	68026363	7	-0.7095	SMALL-LOSS	FOCAL	2	"DPEP2,DPEP3"
TCGA.AA.A010.01A	16	68088402	68112614	11	-1.0834	SMALL-LOSS	FOCAL	1	DUS2
TCGA.A6.3808.01A	16	68155959	68266094	16	-1.0909	SMALL-LOSS	FOCAL	2	"ESRP2,NFATC3"
TCGA.AA.A00N.01A	16	68191762	68337878	34	-0.6667	SMALL-LOSS	FOCAL	5	"ESRP2,NFATC3,PLA2G15,SLC7A6,SLC7A6OS"
TCGA.AA.A010.01A	16	68248184	68279290	12	-0.6362	SMALL-LOSS	FOCAL	3	"ESRP2,NFATC3,PLA2G15"
TCGA.AG.4009.01A	16	68255047	68308578	17	-1.0344	SMALL-LOSS	FOCAL	4	"ESRP2,NFATC3,PLA2G15,SLC7A6"
TCGA.AA.A010.01A	16	68325065	68337878	8	-0.7565	SMALL-LOSS	FOCAL	2	"SLC7A6,SLC7A6OS"
TCGA.AA.3979	16	68710164	69216799	107	-0.7571	SMALL-LOSS	FOCAL	6	"CDH1,CDH3,CHTF8,CIRH1A,HAS3,TANGO6"
TCGA.AG.4009.01A	16	69143287	69173706	11	-1.0338	SMALL-LOSS	FOCAL	3	"CHTF8,CIRH1A,HAS3"
TCGA.AA.A00N.01A	16	69143287	69177034	12	-1.303	SMALL-LOSS	FOCAL	3	"CHTF8,CIRH1A,HAS3"
TCGA.AA.A010.01A	16	69167316	69202672	15	-1.0627	SMALL-LOSS	FOCAL	1	CIRH1A
TCGA.AA.A010.01A	16	69221020	69419263	39	-0.5489	SMALL-LOSS	FOCAL	7	"COG8,NIP7,PDF,SNTB2,TERF2,TMED6,VPS4A"
TCGA.EI.6883	16	69272970	69564363	57	-0.5981	SMALL-LOSS	FOCAL	8	"COG8,CYB5B,NIP7,PDF,SNTB2,TERF2,TMED6,VPS4A"
TCGA.AG.4009.01A	16	69303996	69373663	16	-1.007	SMALL-LOSS	FOCAL	5	"COG8,NIP7,PDF,SNTB2,VPS4A"
TCGA.AA.A00N.01A	16	69303996	69418472	35	-1.1084	SMALL-LOSS	FOCAL	7	"COG8,NIP7,PDF,SNTB2,TERF2,TMED6,VPS4A"
TCGA.AA.A010.01A	16	69776183	69832568	9	-1.2742	SMALL-LOSS	FOCAL	2	"NOB1,WWP2"
TCGA.AA.3531	16	69895285	69959987	21	-0.7293	SMALL-LOSS	FOCAL	1	WWP2
TCGA.AA.A00N.01A	16	69959273	70164279	23	-0.5751	SMALL-LOSS	FOCAL	3	"CLEC18A,PDPR,WWP2"
TCGA.AA.3509.01A	16	70161111	70208816	17	-0.8504	SMALL-LOSS	FOCAL	2	"CLEC18C,PDPR"
TCGA.AG.4009.01A	16	70219746	70296212	10	-0.9875	SMALL-LOSS	FOCAL	3	"AARS,CLEC18C,EXOSC6"
TCGA.AA.A00N.01A	16	70219746	70316485	22	-0.7283	SMALL-LOSS	FOCAL	3	"AARS,CLEC18C,EXOSC6"
TCGA.AA.3509.01A	16	70310822	70358440	8	-0.9297	SMALL-LOSS	FOCAL	2	"AARS,DDX19B"
TCGA.AA.A010.01A	16	70688399	70699309	8	-1.041	SMALL-LOSS	FOCAL	2	"IL34,MTSS1L"
TCGA.AG.4009.01A	16	70688399	70732503	13	-0.63	SMALL-LOSS	FOCAL	3	"IL34,MTSS1L,VAC14"
TCGA.A6.3808.01A	16	70708202	70819593	25	-0.7478	SMALL-LOSS	FOCAL	2	"MTSS1L,VAC14"
TCGA.AA.A01Q.01A	16	70710732	70796379	15	-0.8801	SMALL-LOSS	FOCAL	2	"MTSS1L,VAC14"
TCGA.AA.A00N.01A	16	70834673	70843639	3	-0.6974	SMALL-LOSS	FOCAL	2	"HYDIN,VAC14"
TCGA.CL.5917	16	70846070	71103392	78	-0.9446	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.A6.2686	16	70846070	71202488	94	-0.9995	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AA.3695	16	70846070	71202488	97	-0.9175	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.CM.6676	16	70850892	71225312	95	-0.5823	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.F4.6806	16	70854380	71022528	60	-0.5249	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AG.3594	16	70854380	71202488	94	-0.8307	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.CM.5344	16	70855478	71191404	90	-1.0729	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.DM.A1HB	16	70858120	70886408	7	-0.726	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.DM.A1D8	16	70874791	71225312	88	-0.8309	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AG.3584	16	70883844	71202488	85	-0.7449	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AA.3811	16	70884561	71184897	81	-0.7325	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AZ.6598	16	70899191	70944217	17	-0.5839	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.DM.A1D0	16	70902205	70958507	13	-0.6495	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.DM.A28M.01A	16	70917776	70969807	13	-0.913	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AF.6655	16	70928413	70944217	3	-0.9757	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AG.3580	16	70965285	71188798	54	-1.0306	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AA.3678	16	71000597	71022528	10	-1.1895	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AA.3831	16	71000597	71028622	11	-1.0198	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AA.3673	16	71000597	71048301	16	-0.9706	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.D5.6924	16	71002686	71049390	15	-0.5999	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AG.3878	16	71011390	71184897	34	-1.0239	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AA.3673	16	71149659	71184897	4	-0.9451	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.D5.6924	16	71184897	71191404	3	-1.0942	SMALL-LOSS	FOCAL	1	HYDIN
TCGA.AG.4009.01A	16	71481957	71487865	3	-0.8364	SMALL-LOSS	FOCAL	1	ZNF23
TCGA.AG.3909.01A	16	71481957	71515900	7	-0.8453	SMALL-LOSS	FOCAL	2	"ZNF19,ZNF23"
TCGA.A6.3808.01A	16	71783781	72136924	97	-0.669	SMALL-LOSS	FOCAL	10	"AP1G1,ATXN1L,DHODH,DHX38,HP,HPR,IST1,PKD1L3,TXNL4B,ZNF821"
TCGA.AG.4009.01A	16	71888432	71913738	6	-0.8002	SMALL-LOSS	FOCAL	2	"ATXN1L,ZNF821"
TCGA.CM.6165.01A	16	71971162	71997056	9	-0.56	SMALL-LOSS	FOCAL	1	PKD1L3
TCGA.EI.6513	16	72078485	73127119	237	-0.7759	SMALL-LOSS	FOCAL	6	"DHX38,HP,HPR,PMFBP1,TXNL4B,ZFHX3"
TCGA.AA.3866	16	72113415	72122462	6	-1.0054	SMALL-LOSS	FOCAL	1	TXNL4B
TCGA.EI.6508	16	72147185	72933803	164	-0.8073	SMALL-LOSS	FOCAL	2	"PMFBP1,ZFHX3"
TCGA.AA.3850	16	72314619	72408955	22	-0.64665	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3956	16	73233831	73256814	3	-1.165	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3530	16	73233831	73262978	5	-0.9731	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	16	73233831	73262978	5	-0.6521	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	16	73550342	73556223	6	-0.8123	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	16	73706847	73713943	6	-0.6916	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	16	74999599	75033538	3	-0.9453	SMALL-LOSS	FOCAL	2	"WDR59,ZNRF1"
TCGA.AA.3841	16	75254965	75256359	3	-0.8412	SMALL-LOSS	FOCAL	1	CTRB1
TCGA.AA.3973	16	75263660	75492705	50	-0.8691	SMALL-LOSS	FOCAL	3	"BCAR1,CFDP1,TMEM170A"
TCGA.AA.A010.01A	16	75267701	75327818	9	-1.1386	SMALL-LOSS	FOCAL	2	"BCAR1,CFDP1"
TCGA.AG.3909.01A	16	75481438	75601918	13	-0.5678	SMALL-LOSS	FOCAL	5	"CHST5,CHST6,GABARAPL2,TMEM170A,TMEM231"
TCGA.AA.A00N.01A	16	75664303	75690053	13	-0.8936	SMALL-LOSS	FOCAL	2	"KARS,TERF2IP"
TCGA.AA.3549	16	75898831	76412906	267	-0.7464	SMALL-LOSS	FOCAL	1	CNTNAP4
TCGA.AA.3844	16	76291620	76324360	11	-0.8218	SMALL-LOSS	FOCAL	1	CNTNAP4
TCGA.AA.3867	16	76318639	76321559	3	-1.2365	SMALL-LOSS	FOCAL	1	CNTNAP4
TCGA.AA.A00N.01A	16	76523546	76555014	4	-1.0963	SMALL-LOSS	FOCAL	1	CNTNAP4
TCGA.AG.3891.01A	16	77227319	77231963	5	-0.6715	SMALL-LOSS	FOCAL	1	MON1B
TCGA.CK.5914.01A	16	77240281	77245042	5	-0.8717	SMALL-LOSS	FOCAL	1	SYCE1L
TCGA.AA.3941	16	77439110	77444372	7	-0.605	SMALL-LOSS	FOCAL	1	ADAMTS18
TCGA.AA.3982	16	77441178	77443885	5	-0.9465	SMALL-LOSS	FOCAL	1	ADAMTS18
TCGA.AA.3844	16	77441178	77444372	6	-0.756	SMALL-LOSS	FOCAL	1	ADAMTS18
TCGA.AA.3982	16	77481338	77492385	7	-0.5764	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3715	16	78087900	78347737	136	-0.9407	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AZ.4315	16	78225247	78496875	158	-0.6913	SMALL-LOSS	FOCAL	1	WWOX
TCGA.QG.A5Z2	16	78243383	78817568	462	-0.6366	SMALL-LOSS	FOCAL	1	WWOX
TCGA.NH.A5IV	16	78256679	78557768	236	-0.7688	SMALL-LOSS	FOCAL	1	WWOX
TCGA.EI.6882	16	78385481	78487876	72	-0.824	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3492	16	78416447	78446601	29	-0.6948	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AZ.6598	16	78458806	78617930	177	-0.9456	SMALL-LOSS	FOCAL	1	WWOX
TCGA.A6.6780	16	78492824	78521338	50	-0.7813	SMALL-LOSS	FOCAL	1	WWOX
TCGA.CA.5254	16	78505947	78530884	34	-0.5247	SMALL-LOSS	FOCAL	1	WWOX
TCGA.DM.A0XD	16	78539114	78740679	181	-0.6054	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3516	16	78544041	78718594	162	-0.5315	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3543	16	78544854	78705025	138	-1.1775	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3864	16	78561170	78578899	20	-0.8269	SMALL-LOSS	FOCAL	1	WWOX
TCGA.DM.A28H	16	78614507	78679532	49	-0.6682	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3663	16	78642805	78773273	102	-0.712	SMALL-LOSS	FOCAL	1	WWOX
TCGA.CA.5254	16	78679062	78718594	38	-0.566	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AG.3883	16	78700673	79128044	423	-0.8442	SMALL-LOSS	FOCAL	1	WWOX
TCGA.DM.A1HB	16	78703544	78739256	38	-0.6622	SMALL-LOSS	FOCAL	1	WWOX
TCGA.CM.5861	16	78704318	78729623	35	-0.6241	SMALL-LOSS	FOCAL	1	WWOX
TCGA.NH.A5IV	16	78704737	78931307	222	-0.5442	SMALL-LOSS	FOCAL	1	WWOX
TCGA.F5.6464	16	78706788	78729623	30	-0.9981	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3864	16	78714256	78726620	20	-0.6452	SMALL-LOSS	FOCAL	1	WWOX
TCGA.A6.3809	16	78717671	78874556	148	-0.7341	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3516	16	78721760	78792735	40	-0.981	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3518	16	78776032	78997055	232	-0.804	SMALL-LOSS	FOCAL	1	WWOX
TCGA.A6.6781	16	78779011	78883117	123	-0.9189	SMALL-LOSS	FOCAL	1	WWOX
TCGA.DM.A0XD	16	78784250	78798366	10	-1.0165	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AZ.4615	16	78822568	78909314	100	-0.6862	SMALL-LOSS	FOCAL	1	WWOX
TCGA.A6.5656	16	78825221	78891593	89	-0.6756	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3664	16	78843868	78950157	113	-0.9754	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3492	16	78843868	79155860	307	-0.8281	SMALL-LOSS	FOCAL	1	WWOX
TCGA.A6.6653	16	78854317	78868108	25	-0.5419	SMALL-LOSS	FOCAL	1	WWOX
TCGA.DM.A0X9	16	78905249	79158824	243	-0.9115	SMALL-LOSS	FOCAL	1	WWOX
TCGA.EI.6508	16	78907054	79132338	222	-0.8402	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AZ.4614	16	78907054	79224466	307	-1.2009	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3982	16	78923643	78926017	7	-0.6388	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AY.5543	16	78923643	78951762	34	-0.6196	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AY.5543	16	78960322	79018165	61	-0.6571	SMALL-LOSS	FOCAL	1	WWOX
TCGA.CK.5913	16	79002430	79020531	23	-0.6388	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AH.6897	16	79011323	79100558	91	-1.2514	SMALL-LOSS	FOCAL	1	WWOX
TCGA.AA.3556	16	80546182	80607433	37	-0.8714	SMALL-LOSS	FOCAL	1	DYNLRB2
TCGA.AF.3913	16	80651108	80652245	4	-0.8565	SMALL-LOSS	FOCAL	1	CDYL2
TCGA.AA.3941	16	80817657	80818971	4	-0.659	SMALL-LOSS	FOCAL	1	CDYL2
TCGA.CK.5914.01A	16	81030882	81087590	16	-0.7137	SMALL-LOSS	FOCAL	4	"ATMIN,C16orf46,CENPN,CMC2"
TCGA.AA.3509.01A	16	81045508	81142768	27	-0.6073	SMALL-LOSS	FOCAL	5	"ATMIN,C16orf46,CENPN,GCSH,PKD1L2"
TCGA.AG.4009.01A	16	81058264	81076734	8	-0.9209	SMALL-LOSS	FOCAL	2	"ATMIN,CENPN"
TCGA.AA.A010.01A	16	81094759	81124148	8	-0.5319	SMALL-LOSS	FOCAL	2	"C16orf46,GCSH"
TCGA.CK.5914.01A	16	81097344	81142116	7	-0.6449	SMALL-LOSS	FOCAL	3	"C16orf46,GCSH,PKD1L2"
TCGA.AG.3883	16	81209714	81210796	4	-1.1445	SMALL-LOSS	FOCAL	1	PKD1L2
TCGA.AG.A01Y	16	81579432	81659082	47	-1.0376	SMALL-LOSS	FOCAL	1	CMIP
TCGA.AA.A00N.01A	16	81641150	81726677	11	-0.7486	SMALL-LOSS	FOCAL	1	CMIP
TCGA.AG.3909.01A	16	81685791	81697824	4	-0.798	SMALL-LOSS	FOCAL	1	CMIP
TCGA.AA.3844	16	82354753	82367629	5	-0.9424	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	16	82354753	82367629	5	-1.297	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	16	82354753	82367629	5	-1.2414	SMALL-LOSS	FOCAL	0	None
TCGA.AY.6197	16	82669957	82839041	175	-0.864	SMALL-LOSS	FOCAL	1	CDH13
TCGA.AA.3848	16	82687385	82837456	151	-0.9233	SMALL-LOSS	FOCAL	1	CDH13
TCGA.DM.A28H	16	82721423	83306570	511	-0.6307	SMALL-LOSS	FOCAL	1	CDH13
TCGA.AA.3524	16	82834026	83811639	874	-0.8362	SMALL-LOSS	FOCAL	1	CDH13
TCGA.AA.3848	16	83171081	83179356	14	-0.5904	SMALL-LOSS	FOCAL	1	CDH13
TCGA.DM.A28H	16	83307763	83839294	478	-0.6092	SMALL-LOSS	FOCAL	1	CDH13
TCGA.AA.3979	16	83490773	83613776	100	-1.0092	SMALL-LOSS	FOCAL	1	CDH13
TCGA.DM.A1D4	16	83602283	83620468	14	-0.7851	SMALL-LOSS	FOCAL	1	CDH13
TCGA.DM.A1D4	16	83629585	83743545	95	-0.8243	SMALL-LOSS	FOCAL	1	CDH13
TCGA.EI.6508	16	83656645	83774364	111	-0.7923	SMALL-LOSS	FOCAL	1	CDH13
TCGA.AF.3913	16	83782516	83782791	3	-1.2963	SMALL-LOSS	FOCAL	1	CDH13
TCGA.AA.A00N.01A	16	83828542	83945775	7	-1.272	SMALL-LOSS	FOCAL	3	"CDH13,HSBP1,MLYCD"
TCGA.G4.6295	16	83889679	83891768	3	-1.1138	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	16	84024048	84030771	4	-0.8913	SMALL-LOSS	FOCAL	1	NECAB2
TCGA.AA.A00N.01A	16	84132639	84228051	29	-1.0462	SMALL-LOSS	FOCAL	5	"ADAD2,DNAAF1,HSDL1,MBTPS1,TAF1C"
TCGA.A6.3808.01A	16	84132639	84255801	34	-1.0746	SMALL-LOSS	FOCAL	6	"ADAD2,DNAAF1,HSDL1,KCNG4,MBTPS1,TAF1C"
TCGA.AG.4009.01A	16	84158185	84189151	8	-1.0366	SMALL-LOSS	FOCAL	2	"DNAAF1,HSDL1"
TCGA.AA.A010.01A	16	84182584	84199341	6	-1.2313	SMALL-LOSS	FOCAL	1	DNAAF1
TCGA.AA.A010.01A	16	84351818	84360421	4	-1.3026	SMALL-LOSS	FOCAL	1	WFDC1
TCGA.AG.4009.01A	16	84684414	84695137	5	-0.84	SMALL-LOSS	FOCAL	1	KLHL36
TCGA.AA.A01Q.01A	16	84684414	85141178	42	-0.6223	SMALL-LOSS	FOCAL	6	"CRISPLD2,FAM92B,KIAA0513,KLHL36,USP10,ZDHHC7"
TCGA.AA.A00N.01A	16	85114873	85832631	42	-0.5547	SMALL-LOSS	FOCAL	6	"C16orf74,EMC8,FAM92B,GINS2,GSE1,KIAA0513"
TCGA.D5.6538	16	85164600	85166732	3	-0.7675	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	16	85834751	87493572	51	-1.2278	SMALL-LOSS	FOCAL	10	"C16orf95,COX4I1,FBXO31,FOXC2,FOXF1,FOXL1,IRF8,MAP1LC3B,MTHFSD,ZCCHC14"
TCGA.AA.3850	16	85923080	85935796	6	-0.82025	SMALL-LOSS	FOCAL	1	IRF8
TCGA.D5.6538	16	86447165	86447370	5	-0.5256	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3667	16	86788334	86788706	3	-1.0766	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	16	87001087	87036727	12	-1.0604	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	16	87256858	87291409	5	-0.6532	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	16	87432350	87493572	15	-1.2894	SMALL-LOSS	FOCAL	2	"MAP1LC3B,ZCCHC14"
TCGA.AA.A01Q.01A	16	87935988	88017619	7	-0.6048	SMALL-LOSS	FOCAL	2	"BANP,CA5A"
TCGA.AA.A010.01A	16	87969868	88071502	12	-1.2203	SMALL-LOSS	FOCAL	2	"BANP,CA5A"
TCGA.DY.A1DF	16	88044778	88061575	4	-1.0571	SMALL-LOSS	FOCAL	1	BANP
TCGA.CM.5349	16	88255553	88696308	61	-0.6699	SMALL-LOSS	FOCAL	3	"ZC3H18,ZFPM1,ZNF469"
TCGA.AA.A010.01A	16	88494379	88580755	7	-0.9689	SMALL-LOSS	FOCAL	2	"ZFPM1,ZNF469"
TCGA.AA.A010.01A	16	88664544	88675300	4	-0.6537	SMALL-LOSS	FOCAL	1	ZC3H18
TCGA.AA.A01Q.01A	16	88664544	88675300	4	-1.2131	SMALL-LOSS	FOCAL	1	ZC3H18
TCGA.AG.4009.01A	16	88773495	88901570	13	-0.6814	SMALL-LOSS	FOCAL	5	"APRT,CDT1,CTU2,GALNS,PIEZO1"
TCGA.A6.2683	16	88781849	88802493	4	-1.1512	SMALL-LOSS	FOCAL	1	PIEZO1
TCGA.AA.A010.01A	16	88787642	88802538	14	-0.9421	SMALL-LOSS	FOCAL	1	PIEZO1
TCGA.AA.A010.01A	16	89246578	89620846	46	-0.9235	SMALL-LOSS	FOCAL	6	"ANKRD11,CDH15,LOC100287036,SLC22A31,SPG7,ZNF778"
TCGA.DY.A1DF	16	89376469	89481273	23	-0.6301	SMALL-LOSS	FOCAL	2	"ANKRD11,LOC100287036"
TCGA.BM.6198	16	89420229	89501029	17	-0.53435	SMALL-LOSS	FOCAL	1	ANKRD11
TCGA.BM.6198	16	89508861	89538758	6	-1.29715	SMALL-LOSS	FOCAL	1	ANKRD11
TCGA.AG.4009.01A	16	89576886	89799661	56	-0.6866	SMALL-LOSS	FOCAL	10	"CDK10,CHMP1A,CPNE7,DPEP1,RPL13,SPATA2L,SPATA33,SPG7,VPS9D1,ZNF276"
TCGA.AA.A010.01A	16	89657364	89753066	17	-0.8274	SMALL-LOSS	FOCAL	4	"CHMP1A,CPNE7,DPEP1,SPATA33"
TCGA.AA.A01Q.01A	16	89755596	89761956	10	-1.0612	SMALL-LOSS	FOCAL	1	CDK10
TCGA.AA.A010.01A	16	89763690	89809157	29	-1.1268	SMALL-LOSS	FOCAL	4	"FANCA,SPATA2L,VPS9D1,ZNF276"
TCGA.AG.3909.01A	16	89862266	89911655	10	-0.8549	SMALL-LOSS	FOCAL	2	"FANCA,SPIRE2"
TCGA.CK.5914.01A	16	89862266	89911655	10	-1.1692	SMALL-LOSS	FOCAL	2	"FANCA,SPIRE2"
TCGA.AA.A01Q.01A	16	89865942	89911655	8	-0.9965	SMALL-LOSS	FOCAL	2	"FANCA,SPIRE2"
TCGA.AA.A010.01A	16	89894937	89964923	24	-0.7617	SMALL-LOSS	FOCAL	2	"SPIRE2,TCF25"
TCGA.AA.A00N.01A	16	89916665	90142216	77	-0.7434	SMALL-LOSS	FOCAL	9	"CENPBD1,DBNDD1,DEF8,GAS8,MC1R,PRDM7,SPIRE2,TCF25,TUBB3"
TCGA.AG.4009.01A	16	89964923	90020600	14	-1.0743	SMALL-LOSS	FOCAL	4	"DEF8,MC1R,TCF25,TUBB3"
TCGA.AG.4009.01A	16	90021536	90142216	33	-0.5434	SMALL-LOSS	FOCAL	5	"CENPBD1,DBNDD1,DEF8,GAS8,PRDM7"
TCGA.AA.3697	16	90098628	90103245	7	-0.795	SMALL-LOSS	FOCAL	1	GAS8
TCGA.AA.A010.01A	16	90106671	90142216	15	-0.8549	SMALL-LOSS	FOCAL	2	"GAS8,PRDM7"
TCGA.AA.3509.01A	17	5960	423019	22	-0.6831	SMALL-LOSS	FOCAL	6	"C17orf97,DOC2B,FAM101B,LOC100506388,RPH3AL,VPS53"
TCGA.AZ.4684.01A	17	5960	423019	22	-0.529	SMALL-LOSS	FOCAL	6	"C17orf97,DOC2B,FAM101B,LOC100506388,RPH3AL,VPS53"
TCGA.AM.5820	17	102208	115656	10	-0.7261	SMALL-LOSS	FOCAL	1	RPH3AL
TCGA.A6.6652	17	181081	488605	41	-0.9	SMALL-LOSS	FOCAL	5	"C17orf97,FAM101B,LOC100506388,RPH3AL,VPS53"
TCGA.AG.4009.01A	17	262892	530363	14	-0.8162	SMALL-LOSS	FOCAL	3	"C17orf97,FAM101B,VPS53"
TCGA.AZ.4684.01A	17	424794	691158	36	-1.0195	SMALL-LOSS	FOCAL	5	"FAM57A,GEMIN4,GLOD4,RNMTL1,VPS53"
TCGA.AA.3509.01A	17	424794	729151	44	-1.2039	SMALL-LOSS	FOCAL	6	"FAM57A,GEMIN4,GLOD4,NXN,RNMTL1,VPS53"
TCGA.AG.3909.01A	17	489461	648127	16	-1.0084	SMALL-LOSS	FOCAL	3	"FAM57A,GEMIN4,VPS53"
TCGA.AA.A00N.01A	17	602508	961160	44	-1.1467	SMALL-LOSS	FOCAL	8	"ABR,FAM57A,GEMIN4,GLOD4,NXN,RNMTL1,TIMM22,VPS53"
TCGA.AG.4009.01A	17	641049	663344	6	-1.2967	SMALL-LOSS	FOCAL	3	"FAM57A,GEMIN4,GLOD4"
TCGA.AA.A01Q.01A	17	982539	1012125	5	-1.1294	SMALL-LOSS	FOCAL	1	ABR
TCGA.AG.4009.01A	17	1375164	1401183	15	-1.1061	SMALL-LOSS	FOCAL	2	"INPP5K,MYO1C"
TCGA.AA.A00N.01A	17	1383780	1461757	26	-0.9277	SMALL-LOSS	FOCAL	3	"INPP5K,MYO1C,PITPNA"
TCGA.CM.6163	17	1414589	1444701	8	-0.924	SMALL-LOSS	FOCAL	2	"INPP5K,PITPNA"
TCGA.AA.A010.01A	17	1416700	1619797	69	-0.9891	SMALL-LOSS	FOCAL	7	"INPP5K,PITPNA,PRPF8,RILP,SCARF1,SLC43A2,TLCD2"
TCGA.A6.3808.01A	17	1486461	1655829	70	-1.1044	SMALL-LOSS	FOCAL	7	"PRPF8,RILP,SCARF1,SERPINF2,SLC43A2,TLCD2,WDR81"
TCGA.AG.4009.01A	17	1538012	1628202	38	-1.2205	SMALL-LOSS	FOCAL	5	"PRPF8,RILP,SCARF1,TLCD2,WDR81"
TCGA.AA.A00N.01A	17	1554069	1619797	31	-1.2717	SMALL-LOSS	FOCAL	2	"PRPF8,TLCD2"
TCGA.AG.3909.01A	17	1559675	1582861	20	-0.9226	SMALL-LOSS	FOCAL	1	PRPF8
TCGA.AG.3906.01A	17	1628202	1942982	48	-0.6333	SMALL-LOSS	FOCAL	7	"DPH1,RPA1,RTN4RL1,SERPINF1,SERPINF2,SMYD4,WDR81"
TCGA.AG.3909.01A	17	1651892	1945860	42	-0.7089	SMALL-LOSS	FOCAL	7	"DPH1,OVCA2,RPA1,RTN4RL1,SERPINF1,SERPINF2,SMYD4"
TCGA.AA.3861.01A	17	1778925	1959526	19	-1.1728	SMALL-LOSS	FOCAL	5	"DPH1,HIC1,OVCA2,RPA1,RTN4RL1"
TCGA.AG.4009.01A	17	1936772	1972040	10	-0.9801	SMALL-LOSS	FOCAL	4	"DPH1,HIC1,OVCA2,SMG6"
TCGA.AG.3906.01A	17	1972040	2203722	16	-0.6048	SMALL-LOSS	FOCAL	1	SMG6
TCGA.CK.5914.01A	17	2139746	2186869	4	-0.7202	SMALL-LOSS	FOCAL	1	SMG6
TCGA.AA.A00N.01A	17	2147906	2186869	3	-0.5358	SMALL-LOSS	FOCAL	1	SMG6
TCGA.AG.4009.01A	17	2185904	2651322	84	-0.9267	SMALL-LOSS	FOCAL	8	"CLUH,METTL16,MNT,PAFAH1B1,SGSM2,SMG6,SRR,TSR1"
TCGA.CK.5914.01A	17	2239281	2935613	94	-0.8409	SMALL-LOSS	FOCAL	7	"CLUH,METTL16,MNT,PAFAH1B1,RAP1GAP2,SGSM2,TSR1"
TCGA.AA.A00N.01A	17	2239572	2703748	71	-0.6195	SMALL-LOSS	FOCAL	7	"CLUH,METTL16,MNT,PAFAH1B1,RAP1GAP2,SGSM2,TSR1"
TCGA.AG.A01W.01A	17	2257028	2531723	22	-0.6897	SMALL-LOSS	FOCAL	4	"METTL16,MNT,PAFAH1B1,SGSM2"
TCGA.AA.3930.01A	17	2264882	2276624	12	-1.1091	SMALL-LOSS	FOCAL	1	SGSM2
TCGA.AA.A010.01A	17	2264882	2568610	39	-0.7802	SMALL-LOSS	FOCAL	4	"METTL16,MNT,PAFAH1B1,SGSM2"
TCGA.AA.A01Q.01A	17	2266069	2282670	17	-1.1262	SMALL-LOSS	FOCAL	1	SGSM2
TCGA.AG.4009.01A	17	3300723	3386739	14	-0.8644	SMALL-LOSS	FOCAL	5	"ASPA,OR1E1,OR1E2,OR3A3,SPATA22"
TCGA.CK.5914.01A	17	3343404	3539329	50	-0.7893	SMALL-LOSS	FOCAL	5	"ASPA,SHPK,SPATA22,TRPV1,TRPV3"
TCGA.AG.3909.01A	17	3384879	3539329	41	-0.7068	SMALL-LOSS	FOCAL	4	"ASPA,SHPK,TRPV1,TRPV3"
TCGA.AA.A00N.01A	17	3543432	3599124	26	-0.9154	SMALL-LOSS	FOCAL	4	"CTNS,EMC6,P2RX5,TAX1BP3"
TCGA.AA.A01Q.01A	17	3543432	3664365	52	-0.5356	SMALL-LOSS	FOCAL	6	"CTNS,EMC6,GSG2,ITGAE,P2RX5,TAX1BP3"
TCGA.AG.3891.01A	17	3558243	3592749	16	-0.6166	SMALL-LOSS	FOCAL	4	"CTNS,EMC6,P2RX5,TAX1BP3"
TCGA.AA.3930.01A	17	3559732	3591879	13	-1.0218	SMALL-LOSS	FOCAL	4	"CTNS,EMC6,P2RX5,TAX1BP3"
TCGA.AG.A01W.01A	17	3564842	3603779	20	-0.5247	SMALL-LOSS	FOCAL	4	"CTNS,EMC6,P2RX5,TAX1BP3"
TCGA.AG.A01L.01A	17	3619944	3631166	7	-1.1312	SMALL-LOSS	FOCAL	2	"GSG2,ITGAE"
TCGA.CK.5914.01A	17	3643034	3664365	14	-0.8392	SMALL-LOSS	FOCAL	1	ITGAE
TCGA.AG.3909.01A	17	3663414	3925956	58	-0.6579	SMALL-LOSS	FOCAL	6	"ATP2A3,C17orf85,CAMKK1,ITGAE,P2RX1,ZZEF1"
TCGA.CK.5914.01A	17	3717587	3917334	63	-0.9989	SMALL-LOSS	FOCAL	5	"ATP2A3,C17orf85,CAMKK1,P2RX1,ZZEF1"
TCGA.AA.A01Q.01A	17	3765450	3910124	46	-0.8109	SMALL-LOSS	FOCAL	4	"ATP2A3,CAMKK1,P2RX1,ZZEF1"
TCGA.AG.4009.01A	17	3785534	3806459	12	-0.973	SMALL-LOSS	FOCAL	2	"CAMKK1,P2RX1"
TCGA.AG.3906.01A	17	3912871	4045828	50	-0.6807	SMALL-LOSS	FOCAL	1	ZZEF1
TCGA.AG.3909.01A	17	4047010	4077156	9	-0.9432	SMALL-LOSS	FOCAL	2	"ANKFY1,CYB5D2"
TCGA.AG.3906.01A	17	4047010	4100617	21	-1.0162	SMALL-LOSS	FOCAL	2	"ANKFY1,CYB5D2"
TCGA.CK.5914.01A	17	4047010	4139016	27	-1.0264	SMALL-LOSS	FOCAL	2	"ANKFY1,CYB5D2"
TCGA.AG.3909.01A	17	4088104	4120241	9	-0.9123	SMALL-LOSS	FOCAL	1	ANKFY1
TCGA.AG.4009.01A	17	4111190	4145509	5	-1.1583	SMALL-LOSS	FOCAL	1	ANKFY1
TCGA.AA.A010.01A	17	4381801	4428311	5	-1.0597	SMALL-LOSS	FOCAL	2	"SPNS2,SPNS3"
TCGA.AA.A01Q.01A	17	4442693	4457063	15	-1.1627	SMALL-LOSS	FOCAL	2	"MYBBP1A,SPNS2"
TCGA.AG.3909.01A	17	4443626	4594146	44	-0.7694	SMALL-LOSS	FOCAL	5	"ALOX15,GGT6,MYBBP1A,PELP1,SMTNL2"
TCGA.AG.4009.01A	17	4448868	4594605	39	-0.532	SMALL-LOSS	FOCAL	5	"ALOX15,GGT6,MYBBP1A,PELP1,SMTNL2"
TCGA.AA.A010.01A	17	4594146	4647943	27	-1.0962	SMALL-LOSS	FOCAL	5	"ARRB2,CXCL16,MED11,PELP1,ZMYND15"
TCGA.AG.3909.01A	17	4594605	4712394	40	-1.2484	SMALL-LOSS	FOCAL	10	"ARRB2,CXCL16,GLTPD2,MED11,PELP1,PLD2,PSMB6,TM4SF5,VMO1,ZMYND15"
TCGA.AG.4009.01A	17	4607111	4717666	41	-1.2571	SMALL-LOSS	FOCAL	10	"ARRB2,CXCL16,GLTPD2,MED11,PELP1,PLD2,PSMB6,TM4SF5,VMO1,ZMYND15"
TCGA.AF.3914.01A	17	4618227	4636293	13	-0.5163	SMALL-LOSS	FOCAL	2	"ARRB2,MED11"
TCGA.AA.A01Q.01A	17	4618227	4645584	21	-0.6204	SMALL-LOSS	FOCAL	4	"ARRB2,CXCL16,MED11,ZMYND15"
TCGA.AG.A01W.01A	17	4646400	4724498	26	-0.9036	SMALL-LOSS	FOCAL	6	"GLTPD2,PLD2,PSMB6,TM4SF5,VMO1,ZMYND15"
TCGA.AF.3914.01A	17	4646558	4718762	22	-0.6754	SMALL-LOSS	FOCAL	6	"GLTPD2,PLD2,PSMB6,TM4SF5,VMO1,ZMYND15"
TCGA.AA.A010.01A	17	4648462	4692756	10	-0.5858	SMALL-LOSS	FOCAL	4	"GLTPD2,TM4SF5,VMO1,ZMYND15"
TCGA.AG.3909.01A	17	4714047	4804770	32	-0.558	SMALL-LOSS	FOCAL	4	"C17orf107,CHRNE,MINK1,PLD2"
TCGA.AG.A015.01A	17	4717666	4725906	11	-0.7276	SMALL-LOSS	FOCAL	1	PLD2
TCGA.AA.3930.01A	17	4787610	4798972	17	-0.7196	SMALL-LOSS	FOCAL	1	MINK1
TCGA.AG.A01W.01A	17	4803506	4817557	12	-1.1718	SMALL-LOSS	FOCAL	2	"C17orf107,CHRNE"
TCGA.AG.A01W.01A	17	4818358	4826043	7	-0.7837	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	17	4836661	4923234	61	-1.0606	SMALL-LOSS	FOCAL	9	"CAMTA2,ENO3,GP1BA,INCA1,KIF1C,PFN1,RNF167,SLC25A11,SPAG7"
TCGA.AA.A01Q.01A	17	4841015	4859816	19	-0.9318	SMALL-LOSS	FOCAL	4	"ENO3,PFN1,RNF167,SLC25A11"
TCGA.AG.4009.01A	17	4841015	4864028	20	-1.1759	SMALL-LOSS	FOCAL	5	"ENO3,PFN1,RNF167,SLC25A11,SPAG7"
TCGA.AG.A01L.01A	17	4870956	4880305	10	-1.2367	SMALL-LOSS	FOCAL	2	"CAMTA2,SPAG7"
TCGA.AG.A016.01A	17	4870956	4881767	11	-0.6626	SMALL-LOSS	FOCAL	2	"CAMTA2,SPAG7"
TCGA.AF.3914.01A	17	4870956	5035612	52	-0.6136	SMALL-LOSS	FOCAL	8	"CAMTA2,INCA1,KIF1C,SLC52A1,SPAG7,USP6,ZFP3,ZNF232"
TCGA.AG.A015.01A	17	4871991	4876863	7	-0.8398	SMALL-LOSS	FOCAL	1	CAMTA2
TCGA.AG.A01L.01A	17	4881767	4893407	13	-0.6485	SMALL-LOSS	FOCAL	2	"CAMTA2,INCA1"
TCGA.AA.A01Q.01A	17	4886005	5038457	40	-0.7092	SMALL-LOSS	FOCAL	7	"CAMTA2,INCA1,KIF1C,SLC52A1,USP6,ZFP3,ZNF232"
TCGA.AG.4009.01A	17	4904009	5058665	46	-1.2096	SMALL-LOSS	FOCAL	5	"KIF1C,SLC52A1,USP6,ZFP3,ZNF232"
TCGA.AA.A010.01A	17	4925375	5066132	36	-0.6593	SMALL-LOSS	FOCAL	5	"KIF1C,SLC52A1,USP6,ZFP3,ZNF232"
TCGA.AG.A01L.01A	17	4996588	5015017	6	-0.9195	SMALL-LOSS	FOCAL	2	"ZFP3,ZNF232"
TCGA.AA.A00N.01A	17	5012201	5042612	16	-0.9164	SMALL-LOSS	FOCAL	2	"USP6,ZNF232"
TCGA.AF.3914.01A	17	5036184	5042612	10	-1.1051	SMALL-LOSS	FOCAL	1	USP6
TCGA.AA.A00N.01A	17	5058665	5073747	6	-0.7089	SMALL-LOSS	FOCAL	1	USP6
TCGA.CK.5914.01A	17	5076048	5283631	24	-0.7232	SMALL-LOSS	FOCAL	4	"RABEP1,SCIMP,USP6,ZNF594"
TCGA.AG.A00C.01A	17	5118156	5331351	40	-0.6294	SMALL-LOSS	FOCAL	4	"NUP88,RABEP1,RPAIN,SCIMP"
TCGA.AG.3909.01A	17	5302834	5323475	9	-0.5432	SMALL-LOSS	FOCAL	2	"NUP88,RPAIN"
TCGA.CK.5914.01A	17	5308326	5418729	41	-1.3028	SMALL-LOSS	FOCAL	8	"C1QBP,DERL2,DHX33,LOC728392,MIS12,NLRP1,NUP88,RPAIN"
TCGA.AA.A00N.01A	17	5324569	5421014	35	-1.1006	SMALL-LOSS	FOCAL	7	"C1QBP,DERL2,DHX33,LOC728392,MIS12,NLRP1,RPAIN"
TCGA.AG.A00C.01A	17	5347488	6528034	87	-0.5966	SMALL-LOSS	FOCAL	10	"AIPL1,DERL2,DHX33,FAM64A,KIAA0753,LOC728392,MIS12,NLRP1,PITPNM3,WSCD1"
TCGA.AG.4009.01A	17	5392171	5424793	7	-0.8818	SMALL-LOSS	FOCAL	3	"LOC728392,MIS12,NLRP1"
TCGA.AG.3909.01A	17	5418054	5424793	5	-0.6349	SMALL-LOSS	FOCAL	1	NLRP1
TCGA.AA.3966	17	5772275	5776724	4	-1.1356	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3662	17	5782944	6288268	222	-0.6618	SMALL-LOSS	FOCAL	1	WSCD1
TCGA.AA.A010.01A	17	5983952	6014054	6	-1.0049	SMALL-LOSS	FOCAL	1	WSCD1
TCGA.CK.5914.01A	17	5983952	6380318	30	-0.6977	SMALL-LOSS	FOCAL	4	"AIPL1,FAM64A,PITPNM3,WSCD1"
TCGA.AA.A01F.01A	17	5998392	6348430	12	-0.518	SMALL-LOSS	FOCAL	3	"AIPL1,FAM64A,WSCD1"
TCGA.AG.3909.01A	17	5998392	6367458	20	-1.0536	SMALL-LOSS	FOCAL	4	"AIPL1,FAM64A,PITPNM3,WSCD1"
TCGA.AG.A01W.01A	17	6321067	6438961	12	-0.5988	SMALL-LOSS	FOCAL	3	"AIPL1,FAM64A,PITPNM3"
TCGA.AA.A00N.01A	17	6337191	6364646	9	-0.5956	SMALL-LOSS	FOCAL	3	"AIPL1,FAM64A,PITPNM3"
TCGA.AA.A01F.01A	17	6364646	6371493	5	-0.8011	SMALL-LOSS	FOCAL	1	PITPNM3
TCGA.AG.A016.01A	17	6367000	6373553	5	-0.8089	SMALL-LOSS	FOCAL	1	PITPNM3
TCGA.AG.A015.01A	17	6367000	6375930	6	-1.1139	SMALL-LOSS	FOCAL	1	PITPNM3
TCGA.AA.A010.01A	17	6428636	6538291	20	-0.7238	SMALL-LOSS	FOCAL	2	"KIAA0753,PITPNM3"
TCGA.AA.A01Q.01A	17	6545017	6610339	19	-0.5263	SMALL-LOSS	FOCAL	4	"C17orf100,MED31,SLC13A5,TXNDC17"
TCGA.AG.3611.01A	17	6546249	6920508	46	-0.6444	SMALL-LOSS	FOCAL	10	"ALOX12,C17orf100,C17orf49,FBXO39,MED31,RNASEK,SLC13A5,TEKT1,TXNDC17,XAF1"
TCGA.AG.A00C.01A	17	6553613	6733457	32	-0.598	SMALL-LOSS	FOCAL	6	"C17orf100,FBXO39,MED31,SLC13A5,TEKT1,XAF1"
TCGA.AA.A00D.01A	17	6703379	6722465	6	-0.5606	SMALL-LOSS	FOCAL	1	TEKT1
TCGA.AF.3914.01A	17	6716142	6919046	19	-0.7356	SMALL-LOSS	FOCAL	4	"ALOX12,C17orf49,RNASEK,TEKT1"
TCGA.CK.5914.01A	17	6900128	6946232	35	-1.1779	SMALL-LOSS	FOCAL	6	"ALOX12,BCL6B,C17orf49,RNASEK,SLC16A11,SLC16A13"
TCGA.AA.A00N.01A	17	6901768	6944950	32	-1.0593	SMALL-LOSS	FOCAL	6	"ALOX12,BCL6B,C17orf49,RNASEK,SLC16A11,SLC16A13"
TCGA.AF.3914.01A	17	6920877	6929724	7	-0.5741	SMALL-LOSS	FOCAL	1	BCL6B
TCGA.AG.A00C.01A	17	6930272	7080128	22	-0.554	SMALL-LOSS	FOCAL	6	"ASGR1,ASGR2,BCL6B,CLEC10A,SLC16A11,SLC16A13"
TCGA.AG.A01W.01A	17	7084833	7095191	9	-0.8478	SMALL-LOSS	FOCAL	1	DLG4
TCGA.AA.3967.01A	17	7093980	7127946	22	-1.1142	SMALL-LOSS	FOCAL	2	"ACADVL,DLG4"
TCGA.AA.3930.01A	17	7106170	7140651	28	-0.8888	SMALL-LOSS	FOCAL	4	"ACADVL,DLG4,DVL2,PHF23"
TCGA.AA.A00N.01A	17	7106170	7193235	55	-1.0682	SMALL-LOSS	FOCAL	10	"ACADVL,CLDN7,CTDNEP1,DLG4,DVL2,ELP5,GABARAP,PHF23,SLC2A4,YBX2"
TCGA.AA.A010.01A	17	7123735	7193235	45	-0.7278	SMALL-LOSS	FOCAL	9	"ACADVL,CLDN7,CTDNEP1,DVL2,ELP5,GABARAP,PHF23,SLC2A4,YBX2"
TCGA.AG.4009.01A	17	7138956	7192797	24	-1.1676	SMALL-LOSS	FOCAL	7	"CLDN7,CTDNEP1,ELP5,GABARAP,PHF23,SLC2A4,YBX2"
TCGA.AF.3914.01A	17	7149294	7210302	23	-0.9068	SMALL-LOSS	FOCAL	5	"CLDN7,CTDNEP1,ELP5,SLC2A4,YBX2"
TCGA.AG.A01W.01A	17	7180739	7188535	6	-0.9921	SMALL-LOSS	FOCAL	1	SLC2A4
TCGA.AA.A01Q.01A	17	7186512	7217590	18	-1.2228	SMALL-LOSS	FOCAL	4	"EIF5A,GPS2,SLC2A4,YBX2"
TCGA.AA.A010.01A	17	7218237	7230032	15	-1.1966	SMALL-LOSS	FOCAL	2	"GPS2,NEURL4"
TCGA.AF.3914.01A	17	7218237	7290635	41	-0.9629	SMALL-LOSS	FOCAL	6	"ACAP1,GPS2,KCTD11,NEURL4,TMEM95,TNK1"
TCGA.AG.4009.01A	17	7224041	7329263	51	-1.2028	SMALL-LOSS	FOCAL	10	"ACAP1,C17orf74,KCTD11,NEURL4,NLGN2,PLSCR3,SPEM1,TMEM256,TMEM95,TNK1"
TCGA.AA.A010.01A	17	7230455	7291714	28	-0.8007	SMALL-LOSS	FOCAL	5	"ACAP1,KCTD11,NEURL4,TMEM95,TNK1"
TCGA.AG.A01W.01A	17	7247088	7287056	17	-0.6044	SMALL-LOSS	FOCAL	4	"ACAP1,KCTD11,TMEM95,TNK1"
TCGA.AG.A01W.01A	17	7289130	7300590	9	-1.1123	SMALL-LOSS	FOCAL	2	"PLSCR3,TNK1"
TCGA.AG.A01W.01A	17	7305952	7328753	8	-0.5774	SMALL-LOSS	FOCAL	3	"NLGN2,SPEM1,TMEM256"
TCGA.AG.A01W.01A	17	7334166	7342072	8	-1.2073	SMALL-LOSS	FOCAL	1	TMEM102
TCGA.AA.A010.01A	17	7339203	7405208	30	-0.7867	SMALL-LOSS	FOCAL	6	"CHRNB1,FGF11,POLR2A,SLC35G6,TMEM102,ZBTB4"
TCGA.AG.4009.01A	17	7339203	7460048	42	-0.5745	SMALL-LOSS	FOCAL	8	"CHRNB1,FGF11,POLR2A,SLC35G6,TMEM102,TNFSF12,TNFSF12-TNFSF13,ZBTB4"
TCGA.AG.A01L.01A	17	7349314	7365212	9	-0.8947	SMALL-LOSS	FOCAL	2	"CHRNB1,ZBTB4"
TCGA.AG.A016.01A	17	7350101	7357616	4	-0.9036	SMALL-LOSS	FOCAL	1	CHRNB1
TCGA.AA.A01F.01A	17	7350101	7359881	7	-0.6148	SMALL-LOSS	FOCAL	1	CHRNB1
TCGA.AG.A015.01A	17	7350805	7359881	6	-0.7155	SMALL-LOSS	FOCAL	1	CHRNB1
TCGA.CK.5914.01A	17	7359881	7452450	27	-0.6377	SMALL-LOSS	FOCAL	6	"CHRNB1,POLR2A,SLC35G6,TNFSF12,TNFSF12-TNFSF13,ZBTB4"
TCGA.AA.3967.01A	17	7384738	7416076	22	-0.8238	SMALL-LOSS	FOCAL	3	"POLR2A,SLC35G6,ZBTB4"
TCGA.AG.A00C.01A	17	7385277	7416076	21	-0.5661	SMALL-LOSS	FOCAL	3	"POLR2A,SLC35G6,ZBTB4"
TCGA.AG.A01W.01A	17	7393157	7414674	15	-0.5341	SMALL-LOSS	FOCAL	1	POLR2A
TCGA.AG.3906.01A	17	7399228	7406733	12	-0.5527	SMALL-LOSS	FOCAL	1	POLR2A
TCGA.AA.3930.01A	17	7399228	7416076	20	-0.759	SMALL-LOSS	FOCAL	1	POLR2A
TCGA.AG.3906.01A	17	7411528	7452450	9	-1.0021	SMALL-LOSS	FOCAL	3	"POLR2A,TNFSF12,TNFSF12-TNFSF13"
TCGA.AG.3891.01A	17	7414507	7416076	5	-0.7065	SMALL-LOSS	FOCAL	1	POLR2A
TCGA.AG.A01W.01A	17	7436260	7439819	6	-0.5503	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	17	7453374	7462921	7	-1.0306	SMALL-LOSS	FOCAL	3	"TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AG.3906.01A	17	7453374	7497507	41	-0.5272	SMALL-LOSS	FOCAL	9	"CD68,EIF4A1,FXR2,MPDU1,SENP3,SOX15,TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AG.4009.01A	17	7460379	7466396	8	-1.2608	SMALL-LOSS	FOCAL	4	"SENP3,TNFSF12,TNFSF12-TNFSF13,TNFSF13"
TCGA.AA.A010.01A	17	7462921	7536480	52	-0.5874	SMALL-LOSS	FOCAL	10	"CD68,EIF4A1,FXR2,MPDU1,SAT2,SENP3,SHBG,SOX15,TNFSF12-TNFSF13,TNFSF13"
TCGA.AF.3914.01A	17	7467892	7484648	19	-0.5517	SMALL-LOSS	FOCAL	3	"CD68,EIF4A1,SENP3"
TCGA.AG.A01L.01A	17	7468749	7536480	42	-0.5505	SMALL-LOSS	FOCAL	8	"CD68,EIF4A1,FXR2,MPDU1,SAT2,SENP3,SHBG,SOX15"
TCGA.AG.3909.01A	17	7508922	7572880	14	-1.2228	SMALL-LOSS	FOCAL	5	"ATP1B2,FXR2,SAT2,SHBG,TP53"
TCGA.AA.A00N.01A	17	7517710	7643069	39	-0.5863	SMALL-LOSS	FOCAL	8	"ATP1B2,DNAH2,EFNB3,FXR2,SAT2,SHBG,TP53,WRAP53"
TCGA.AG.A01L.01A	17	7556665	7579634	11	-0.9449	SMALL-LOSS	FOCAL	2	"ATP1B2,TP53"
TCGA.AG.A01L.01A	17	7591935	7673521	32	-0.5786	SMALL-LOSS	FOCAL	3	"DNAH2,EFNB3,WRAP53"
TCGA.AG.3909.01A	17	7604006	7626886	11	-0.9391	SMALL-LOSS	FOCAL	3	"DNAH2,EFNB3,WRAP53"
TCGA.AG.A01W.01A	17	7611956	7625039	13	-0.9667	SMALL-LOSS	FOCAL	2	"DNAH2,EFNB3"
TCGA.AG.3906.01A	17	7630423	7754302	73	-0.5719	SMALL-LOSS	FOCAL	2	"DNAH2,KDM6B"
TCGA.AG.A00C.01A	17	7643069	7727814	57	-0.5618	SMALL-LOSS	FOCAL	1	DNAH2
TCGA.AG.A01W.01A	17	7648293	7676614	16	-0.7724	SMALL-LOSS	FOCAL	1	DNAH2
TCGA.AG.A01L.01A	17	7674600	7684313	11	-0.9437	SMALL-LOSS	FOCAL	1	DNAH2
TCGA.CK.5914.01A	17	7722508	7761452	25	-1.0201	SMALL-LOSS	FOCAL	5	"CYB5D1,DNAH2,KDM6B,NAA38,TMEM88"
TCGA.AA.A00N.01A	17	7724524	7727814	5	-0.5156	SMALL-LOSS	FOCAL	1	DNAH2
TCGA.AG.3909.01A	17	7727814	7840431	72	-1.3161	SMALL-LOSS	FOCAL	9	"CHD3,CNTROB,CYB5D1,DNAH2,KCNAB3,KDM6B,NAA38,TMEM88,TRAPPC1"
TCGA.AG.A01W.01A	17	7733008	7746939	19	-0.6738	SMALL-LOSS	FOCAL	2	"DNAH2,KDM6B"
TCGA.AA.A010.01A	17	7733606	7758775	16	-1.213	SMALL-LOSS	FOCAL	3	"DNAH2,KDM6B,TMEM88"
TCGA.AF.3914.01A	17	7734452	7762689	18	-0.5147	SMALL-LOSS	FOCAL	5	"CYB5D1,DNAH2,KDM6B,NAA38,TMEM88"
TCGA.AA.A00N.01A	17	7736377	7761452	15	-0.7285	SMALL-LOSS	FOCAL	5	"CYB5D1,DNAH2,KDM6B,NAA38,TMEM88"
TCGA.AG.3891.01A	17	7748822	7761452	13	-0.5451	SMALL-LOSS	FOCAL	4	"CYB5D1,KDM6B,NAA38,TMEM88"
TCGA.AG.A01L.01A	17	7762689	7805888	20	-0.6282	SMALL-LOSS	FOCAL	2	"CHD3,CYB5D1"
TCGA.AG.A01W.01A	17	7767086	7793438	27	-0.6979	SMALL-LOSS	FOCAL	1	CHD3
TCGA.AA.A01Q.01A	17	7792282	7798610	10	-0.5432	SMALL-LOSS	FOCAL	1	CHD3
TCGA.AF.3914.01A	17	7792282	7837727	48	-0.9536	SMALL-LOSS	FOCAL	4	"CHD3,CNTROB,KCNAB3,TRAPPC1"
TCGA.AG.A015.01A	17	7796565	7798610	6	-0.7686	SMALL-LOSS	FOCAL	1	CHD3
TCGA.AA.A01Q.01A	17	7800374	7807709	13	-1.2795	SMALL-LOSS	FOCAL	1	CHD3
TCGA.AA.A01Q.01A	17	7808350	7830894	19	-0.7539	SMALL-LOSS	FOCAL	2	"CHD3,KCNAB3"
TCGA.CK.5914.01A	17	7812419	7843374	24	-1.1	SMALL-LOSS	FOCAL	4	"CHD3,CNTROB,KCNAB3,TRAPPC1"
TCGA.AG.A015.01A	17	7826360	7838258	14	-0.9047	SMALL-LOSS	FOCAL	3	"CNTROB,KCNAB3,TRAPPC1"
TCGA.AG.A01L.01A	17	7828362	8007406	60	-0.581	SMALL-LOSS	FOCAL	7	"ALOX12B,ALOX15B,ALOXE3,CNTROB,GUCY2D,KCNAB3,TRAPPC1"
TCGA.AG.4009.01A	17	7834763	7843374	10	-0.8306	SMALL-LOSS	FOCAL	2	"CNTROB,TRAPPC1"
TCGA.AG.4009.01A	17	7907142	7918678	12	-0.9097	SMALL-LOSS	FOCAL	1	GUCY2D
TCGA.AG.3909.01A	17	7907142	8077789	67	-1.2615	SMALL-LOSS	FOCAL	8	"ALOX12B,ALOX15B,ALOXE3,GUCY2D,HES7,PER1,TMEM107,VAMP2"
TCGA.AA.A00N.01A	17	7910339	7915741	6	-0.8086	SMALL-LOSS	FOCAL	1	GUCY2D
TCGA.AG.3906.01A	17	7942444	7980289	15	-0.6892	SMALL-LOSS	FOCAL	2	"ALOX12B,ALOX15B"
TCGA.AA.A00N.01A	17	7976062	8013190	17	-0.7324	SMALL-LOSS	FOCAL	2	"ALOX12B,ALOXE3"
TCGA.AA.A01Q.01A	17	7978896	8013190	14	-0.565	SMALL-LOSS	FOCAL	2	"ALOX12B,ALOXE3"
TCGA.AG.4009.01A	17	8007406	8079475	34	-0.912	SMALL-LOSS	FOCAL	5	"ALOXE3,HES7,PER1,TMEM107,VAMP2"
TCGA.AF.3914.01A	17	8011735	8021122	10	-1.0128	SMALL-LOSS	FOCAL	1	ALOXE3
TCGA.AA.A01Q.01A	17	8014659	8020057	6	-1.2555	SMALL-LOSS	FOCAL	1	ALOXE3
TCGA.AG.A01W.01A	17	8018180	8054147	10	-1.09	SMALL-LOSS	FOCAL	3	"ALOXE3,HES7,PER1"
TCGA.AA.A00N.01A	17	8020057	8077789	24	-0.6959	SMALL-LOSS	FOCAL	5	"ALOXE3,HES7,PER1,TMEM107,VAMP2"
TCGA.AA.A01Q.01A	17	8021122	8077789	20	-0.6847	SMALL-LOSS	FOCAL	5	"ALOXE3,HES7,PER1,TMEM107,VAMP2"
TCGA.AF.3914.01A	17	8053131	8077789	6	-1.1874	SMALL-LOSS	FOCAL	3	"PER1,TMEM107,VAMP2"
TCGA.AG.3909.01A	17	8140643	8222347	39	-0.9891	SMALL-LOSS	FOCAL	5	"ARHGEF15,CTC1,PFAS,RANGRF,SLC25A35"
TCGA.AG.A01W.01A	17	8156073	8164835	8	-1.2139	SMALL-LOSS	FOCAL	1	PFAS
TCGA.AG.A01L.01A	17	8194113	8224109	14	-1.0569	SMALL-LOSS	FOCAL	2	"ARHGEF15,SLC25A35"
TCGA.AA.A01Q.01A	17	8248654	8285413	7	-0.7459	SMALL-LOSS	FOCAL	3	"KRBA2,ODF4,RPL26"
TCGA.AG.4009.01A	17	8248654	8358059	14	-0.9924	SMALL-LOSS	FOCAL	5	"KRBA2,NDEL1,ODF4,RNF222,RPL26"
TCGA.AF.3914.01A	17	8272471	8285413	6	-1.029	SMALL-LOSS	FOCAL	2	"KRBA2,RPL26"
TCGA.AG.3906.01A	17	8347536	8700631	57	-0.8624	SMALL-LOSS	FOCAL	5	"CCDC42,MFSD6L,MYH10,NDEL1,SPDYE4"
TCGA.CK.5914.01A	17	8348982	8647355	51	-0.9215	SMALL-LOSS	FOCAL	3	"CCDC42,MYH10,NDEL1"
TCGA.AG.3611.01A	17	8350033	8363320	5	-0.8215	SMALL-LOSS	FOCAL	1	NDEL1
TCGA.AG.3909.01A	17	8370197	8731842	61	-1.0485	SMALL-LOSS	FOCAL	6	"CCDC42,MFSD6L,MYH10,NDEL1,PIK3R6,SPDYE4"
TCGA.AG.A00C.01A	17	8383406	8411823	14	-0.846	SMALL-LOSS	FOCAL	1	MYH10
TCGA.AA.A00N.01A	17	8472985	8726654	27	-0.5597	SMALL-LOSS	FOCAL	5	"CCDC42,MFSD6L,MYH10,PIK3R6,SPDYE4"
TCGA.AA.3864	17	8492832	8511358	6	-0.6014	SMALL-LOSS	FOCAL	1	MYH10
TCGA.CK.5914.01A	17	8726260	9684752	77	-0.6016	SMALL-LOSS	FOCAL	7	"CFAP52,DHRS7C,NTN1,PIK3R5,PIK3R6,STX8,USP43"
TCGA.AA.3977	17	8871924	8873449	5	-0.5749	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3914.01A	17	9124424	9153827	3	-1.2237	SMALL-LOSS	FOCAL	2	"NTN1,STX8"
TCGA.AG.4009.01A	17	9531942	9580016	10	-0.9684	SMALL-LOSS	FOCAL	2	"CFAP52,USP43"
TCGA.AG.A01L.01A	17	9596392	9801365	26	-0.5879	SMALL-LOSS	FOCAL	4	"DHRS7C,GLP2R,RCVRN,USP43"
TCGA.AA.3862.01A	17	9757772	10209736	32	-1.0683	SMALL-LOSS	FOCAL	4	"GAS7,GLP2R,MYH13,RCVRN"
TCGA.AG.3909.01A	17	9801365	9846400	11	-0.9616	SMALL-LOSS	FOCAL	2	"GAS7,RCVRN"
TCGA.AG.A01L.01A	17	9820498	10351685	68	-0.5254	SMALL-LOSS	FOCAL	4	"GAS7,MYH13,MYH4,MYH8"
TCGA.AG.A01W.01A	17	10244865	10250764	4	-0.5418	SMALL-LOSS	FOCAL	1	MYH13
TCGA.AG.3906.01A	17	10267616	10353719	27	-0.8675	SMALL-LOSS	FOCAL	3	"MYH13,MYH4,MYH8"
TCGA.AG.A01W.01A	17	10291879	10310266	21	-0.5589	SMALL-LOSS	FOCAL	1	MYH8
TCGA.AA.3850	17	10334790	10357280	4	-1.08785	SMALL-LOSS	FOCAL	1	MYH4
TCGA.AG.A01L.01A	17	10353719	10369842	19	-0.8235	SMALL-LOSS	FOCAL	1	MYH4
TCGA.AG.3906.01A	17	10360715	10438359	43	-0.977	SMALL-LOSS	FOCAL	3	"MYH1,MYH2,MYH4"
TCGA.AG.3909.01A	17	10395686	10400999	6	-0.542	SMALL-LOSS	FOCAL	1	MYH1
TCGA.AG.3891.01A	17	10395686	10404385	9	-0.801	SMALL-LOSS	FOCAL	1	MYH1
TCGA.AA.3549	17	10495244	11914106	568	-1.2925	SMALL-LOSS	FOCAL	8	"ADPRM,DNAH9,MYH3,PIRT,SCO1,SHISA6,TMEM220,ZNF18"
TCGA.CK.5914.01A	17	10584386	11572354	37	-0.875	SMALL-LOSS	FOCAL	6	"ADPRM,DNAH9,PIRT,SCO1,SHISA6,TMEM220"
TCGA.AG.3574	17	10680889	11649777	445	-0.9391	SMALL-LOSS	FOCAL	3	"DNAH9,PIRT,SHISA6"
TCGA.AG.3909.01A	17	10728522	11514918	5	-0.5379	SMALL-LOSS	FOCAL	3	"DNAH9,PIRT,SHISA6"
TCGA.AG.A00C.01A	17	11514918	12852909	105	-0.8392	SMALL-LOSS	FOCAL	5	"ARHGAP44,DNAH9,MAP2K4,MYOCD,ZNF18"
TCGA.AA.A010.01A	17	11865167	11958156	9	-0.6125	SMALL-LOSS	FOCAL	3	"DNAH9,MAP2K4,ZNF18"
TCGA.AG.3909.01A	17	11886575	11895761	5	-1.0623	SMALL-LOSS	FOCAL	1	ZNF18
TCGA.AG.3574	17	11914106	12846294	325	-0.9485	SMALL-LOSS	FOCAL	3	"ARHGAP44,MAP2K4,MYOCD"
TCGA.AA.A00N.01A	17	12852909	12876536	6	-1.1594	SMALL-LOSS	FOCAL	1	ARHGAP44
TCGA.AG.3909.01A	17	12852909	12920113	27	-1.0665	SMALL-LOSS	FOCAL	2	"ARHGAP44,ELAC2"
TCGA.CK.5914.01A	17	12852909	13980074	35	-1.1338	SMALL-LOSS	FOCAL	4	"ARHGAP44,COX10,ELAC2,HS3ST3A1"
TCGA.AG.A00C.01A	17	12920978	15341060	27	-0.8403	SMALL-LOSS	FOCAL	9	"CDRT15,CDRT4,COX10,ELAC2,HS3ST3A1,HS3ST3B1,PMP22,TEKT3,TVP23C-CDRT4"
TCGA.AZ.6601	17	13155873	13156978	5	-1.0236	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	15341060	15466668	9	-1.0944	SMALL-LOSS	FOCAL	3	"CDRT4,TVP23C,TVP23C-CDRT4"
TCGA.AA.A00N.01A	17	15406154	15458551	6	-0.7738	SMALL-LOSS	FOCAL	2	"TVP23C,TVP23C-CDRT4"
TCGA.A6.3808.01A	17	15443677	15928311	52	-0.8939	SMALL-LOSS	FOCAL	9	"ADORA2B,CDRT1,TBC1D26,TRIM16,TTC19,TVP23C,TVP23C-CDRT4,ZNF286A,ZSWIM7"
TCGA.CK.5914.01A	17	15501794	15909744	41	-1.0215	SMALL-LOSS	FOCAL	7	"ADORA2B,CDRT1,TBC1D26,TRIM16,TTC19,ZNF286A,ZSWIM7"
TCGA.AA.A010.01A	17	15518927	15619352	16	-0.7577	SMALL-LOSS	FOCAL	3	"CDRT1,TRIM16,ZNF286A"
TCGA.AG.4009.01A	17	15531942	15909744	30	-1.1443	SMALL-LOSS	FOCAL	6	"ADORA2B,TBC1D26,TRIM16,TTC19,ZNF286A,ZSWIM7"
TCGA.AF.3914.01A	17	15534879	15909744	31	-0.7913	SMALL-LOSS	FOCAL	6	"ADORA2B,TBC1D26,TRIM16,TTC19,ZNF286A,ZSWIM7"
TCGA.AG.3906.01A	17	15554358	15848634	14	-0.5251	SMALL-LOSS	FOCAL	4	"ADORA2B,TBC1D26,TRIM16,ZNF286A"
TCGA.AA.3856	17	15554560	15673783	14	-1.1458	SMALL-LOSS	FOCAL	3	"TBC1D26,TRIM16,ZNF286A"
TCGA.AG.3909.01A	17	15604422	15909744	24	-1.2561	SMALL-LOSS	FOCAL	5	"ADORA2B,TBC1D26,TTC19,ZNF286A,ZSWIM7"
TCGA.AA.A01C.01A	17	15848634	16325866	77	-0.5501	SMALL-LOSS	FOCAL	8	"ADORA2B,CENPV,NCOR1,PIGL,TRPV2,TTC19,UBB,ZSWIM7"
TCGA.AA.A010.01A	17	15877956	15935570	15	-1.228	SMALL-LOSS	FOCAL	4	"ADORA2B,NCOR1,TTC19,ZSWIM7"
TCGA.AG.4009.01A	17	15928311	15975409	22	-0.6533	SMALL-LOSS	FOCAL	2	"NCOR1,TTC19"
TCGA.AG.3906.01A	17	15928311	16221040	55	-0.5906	SMALL-LOSS	FOCAL	3	"NCOR1,PIGL,TTC19"
TCGA.AA.3862.01A	17	15961748	16593733	86	-0.6185	SMALL-LOSS	FOCAL	9	"CCDC144A,CENPV,LRRC75A,NCOR1,PIGL,TRPV2,UBB,ZNF287,ZNF624"
TCGA.AG.4009.01A	17	15976726	16052697	19	-1.0868	SMALL-LOSS	FOCAL	1	NCOR1
TCGA.AG.3909.01A	17	15978799	16029349	12	-1.0747	SMALL-LOSS	FOCAL	1	NCOR1
TCGA.AA.A00N.01A	17	15983246	16029349	12	-0.6648	SMALL-LOSS	FOCAL	1	NCOR1
TCGA.CK.5914.01A	17	15983246	16322587	43	-0.9635	SMALL-LOSS	FOCAL	5	"CENPV,NCOR1,PIGL,TRPV2,UBB"
TCGA.AG.3909.01A	17	16054820	16455123	42	-0.7608	SMALL-LOSS	FOCAL	7	"CENPV,LRRC75A,NCOR1,PIGL,TRPV2,UBB,ZNF287"
TCGA.AF.3914.01A	17	16203148	16253208	9	-0.96	SMALL-LOSS	FOCAL	2	"CENPV,PIGL"
TCGA.CK.5914.01A	17	16342924	16640815	31	-0.9306	SMALL-LOSS	FOCAL	4	"CCDC144A,LRRC75A,ZNF287,ZNF624"
TCGA.G4.6295	17	16414855	16581800	28	-0.9938	SMALL-LOSS	FOCAL	2	"ZNF287,ZNF624"
TCGA.CK.5914.01A	17	17049277	17726780	84	-0.9642	SMALL-LOSS	FOCAL	10	"COPS3,FLCN,MED9,MPRIP,NT5M,PEMT,PLD6,RAI1,RASD1,SREBF1"
TCGA.AA.3930.01A	17	17712652	17721526	9	-1.2769	SMALL-LOSS	FOCAL	2	"RAI1,SREBF1"
TCGA.AA.3939.01A	17	17712652	17721526	10	-0.6485	SMALL-LOSS	FOCAL	2	"RAI1,SREBF1"
TCGA.AG.4009.01A	17	18087511	18205540	48	-1.2783	SMALL-LOSS	FOCAL	5	"ALKBH5,FLII,LLGL1,MIEF2,TOP3A"
TCGA.AG.A01W.01A	17	18121698	18232176	35	-0.5739	SMALL-LOSS	FOCAL	6	"FLII,LLGL1,MIEF2,SHMT1,SMCR8,TOP3A"
TCGA.AA.A01Q.01A	17	18133238	18158441	29	-0.7578	SMALL-LOSS	FOCAL	2	"FLII,LLGL1"
TCGA.AG.3909.01A	17	18145181	18256896	52	-1.0147	SMALL-LOSS	FOCAL	6	"FLII,LLGL1,MIEF2,SHMT1,SMCR8,TOP3A"
TCGA.AA.A010.01A	17	18159775	18188477	14	-0.964	SMALL-LOSS	FOCAL	3	"FLII,MIEF2,TOP3A"
TCGA.AF.3914.01A	17	18194108	18208409	7	-1.3179	SMALL-LOSS	FOCAL	1	TOP3A
TCGA.AA.A01Q.01A	17	18195930	18259150	24	-0.5378	SMALL-LOSS	FOCAL	3	"SHMT1,SMCR8,TOP3A"
TCGA.AG.4009.01A	17	18208409	18390923	26	-0.6186	SMALL-LOSS	FOCAL	5	"EVPLL,LGALS9C,SHMT1,SMCR8,TOP3A"
TCGA.AA.A00N.01A	17	18217896	18333631	27	-0.6511	SMALL-LOSS	FOCAL	4	"EVPLL,SHMT1,SMCR8,TOP3A"
TCGA.AF.3914.01A	17	18225934	18243986	8	-0.8455	SMALL-LOSS	FOCAL	2	"SHMT1,SMCR8"
TCGA.AA.A02K.01A	17	18291451	18397485	10	-1.0097	SMALL-LOSS	FOCAL	2	"EVPLL,LGALS9C"
TCGA.AG.A01W.01A	17	18311010	18431695	11	-1.2613	SMALL-LOSS	FOCAL	1	LGALS9C
TCGA.DM.A28M.01A	17	18393973	18506869	10	-0.8515	SMALL-LOSS	FOCAL	1	LGALS9C
TCGA.AG.A016.01A	17	18397494	18509106	7	-0.9631	SMALL-LOSS	FOCAL	1	LGALS9C
TCGA.AG.3891.01A	17	18397494	18544318	17	-0.6227	SMALL-LOSS	FOCAL	2	"LGALS9C,TBC1D28"
TCGA.AA.A00N.01A	17	18490930	18609980	19	-0.9717	SMALL-LOSS	FOCAL	2	"TBC1D28,ZNF286B"
TCGA.AA.3930.01A	17	18528409	18542411	6	-0.9006	SMALL-LOSS	FOCAL	1	TBC1D28
TCGA.AG.4009.01A	17	18539756	18584856	9	-1.2589	SMALL-LOSS	FOCAL	2	"TBC1D28,ZNF286B"
TCGA.AG.3909.01A	17	18542411	18609980	6	-1.1495	SMALL-LOSS	FOCAL	2	"TBC1D28,ZNF286B"
TCGA.AG.A01W.01A	17	18588287	18622505	13	-0.9433	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	17	18673221	18793073	16	-0.8716	SMALL-LOSS	FOCAL	3	"FBXW10,PRPSAP2,TVP23B"
TCGA.AF.3914.01A	17	18769110	18793073	6	-1.3183	SMALL-LOSS	FOCAL	1	PRPSAP2
TCGA.AA.A01Q.01A	17	18863820	18923419	11	-0.7343	SMALL-LOSS	FOCAL	2	"FAM83G,SLC5A10"
TCGA.AA.A02K.01A	17	18872329	18891524	8	-0.7693	SMALL-LOSS	FOCAL	2	"FAM83G,SLC5A10"
TCGA.AG.3909.01A	17	18880848	19247040	21	-0.7039	SMALL-LOSS	FOCAL	8	"B9D1,EPN2,FAM83G,GRAP,GRAPL,LOC388436,LOC79999,SLC5A10"
TCGA.AA.A010.01A	17	18882807	18927480	11	-1.2088	SMALL-LOSS	FOCAL	3	"FAM83G,GRAP,SLC5A10"
TCGA.AG.4009.01A	17	19232819	19263566	9	-0.8283	SMALL-LOSS	FOCAL	2	"B9D1,EPN2"
TCGA.AG.3909.01A	17	19289576	19470357	20	-0.7055	SMALL-LOSS	FOCAL	3	"MFAP4,RNF112,SLC47A1"
TCGA.AG.4009.01A	17	19445658	19554808	14	-1.0469	SMALL-LOSS	FOCAL	2	"ALDH3A2,SLC47A1"
TCGA.CK.5914.01A	17	19568223	19683734	33	-0.7971	SMALL-LOSS	FOCAL	4	"ALDH3A1,ALDH3A2,SLC47A2,ULK2"
TCGA.AA.A00N.01A	17	19575032	19683734	32	-0.5329	SMALL-LOSS	FOCAL	4	"ALDH3A1,ALDH3A2,SLC47A2,ULK2"
TCGA.AG.3909.01A	17	19575032	19839562	60	-0.5591	SMALL-LOSS	FOCAL	5	"AKAP10,ALDH3A1,ALDH3A2,SLC47A2,ULK2"
TCGA.AG.3891.01A	17	19607345	19617992	8	-0.6323	SMALL-LOSS	FOCAL	1	SLC47A2
TCGA.AA.A01Q.01A	17	19643621	19648242	6	-0.8702	SMALL-LOSS	FOCAL	1	ALDH3A1
TCGA.CK.5914.01A	17	19720015	20135008	31	-0.9355	SMALL-LOSS	FOCAL	3	"AKAP10,SPECC1,ULK2"
TCGA.AA.A00N.01A	17	19741757	19871654	24	-0.9589	SMALL-LOSS	FOCAL	2	"AKAP10,ULK2"
TCGA.AG.4009.01A	17	19835067	19999918	10	-1.0423	SMALL-LOSS	FOCAL	2	"AKAP10,SPECC1"
TCGA.AA.A02K.01A	17	20353240	20361445	5	-1.1302	SMALL-LOSS	FOCAL	1	LGALS9B
TCGA.AA.3509.01A	17	20483048	21826060	48	-0.6624	SMALL-LOSS	FOCAL	10	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,MAP2K3,NATD1,TMEM11,USP22"
TCGA.AF.2693	17	20949687	25551555	160	-0.6492	SMALL-LOSS	FOCAL	8	"C17orf51,DHRS7B,KCNJ12,KCNJ18,MAP2K3,MTRNR2L1,NATD1,TMEM11"
TCGA.AG.A016.01A	17	21318628	25639198	14	-0.6426	SMALL-LOSS	FOCAL	5	"C17orf51,KCNJ12,KCNJ18,MTRNR2L1,WSB1"
TCGA.CA.5254	17	21519099	21912071	26	-0.93	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5341	17	21527045	25313689	55	-0.6376	SMALL-LOSS	FOCAL	1	MTRNR2L1
TCGA.AA.3867	17	21717444	25313689	52	-0.8545	SMALL-LOSS	FOCAL	1	MTRNR2L1
TCGA.A6.5666	17	21717542	21717726	3	-1.0849	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A288	17	21909837	22105109	21	-0.5222	SMALL-LOSS	FOCAL	1	MTRNR2L1
TCGA.AG.A01W.01A	17	23928794	23937512	12	-0.7415	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	17	25455184	25480652	7	-1.23435	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A288	17	25569034	25570385	3	-1.0009	SMALL-LOSS	FOCAL	0	None
TCGA.5M.AAT4	17	25588289	25589812	3	-1.2743	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A288	17	25658286	26412823	160	-1.2388	SMALL-LOSS	FOCAL	5	"KSR1,LGALS9,LYRM9,NLK,NOS2"
TCGA.A6.5660	17	25746618	25757488	3	-0.7792	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	17	26092520	26101231	9	-0.5281	SMALL-LOSS	FOCAL	1	NOS2
TCGA.AG.3909.01A	17	26109000	26125677	6	-0.865	SMALL-LOSS	FOCAL	1	NOS2
TCGA.AG.3909.01A	17	26633042	26731617	43	-1.0063	SMALL-LOSS	FOCAL	9	"IFT20,POLDIP2,SARM1,SEBOX,SLC46A1,TMEM199,TMEM97,TNFAIP1,VTN"
TCGA.CK.5914.01A	17	26633042	26731617	46	-0.5776	SMALL-LOSS	FOCAL	9	"IFT20,POLDIP2,SARM1,SEBOX,SLC46A1,TMEM199,TMEM97,TNFAIP1,VTN"
TCGA.AA.A010.01A	17	26675091	26696676	23	-0.5485	SMALL-LOSS	FOCAL	4	"POLDIP2,SEBOX,TMEM199,VTN"
TCGA.AG.4009.01A	17	26685888	26696676	11	-0.7079	SMALL-LOSS	FOCAL	3	"SEBOX,TMEM199,VTN"
TCGA.AA.A00N.01A	17	26691320	26732865	18	-0.8009	SMALL-LOSS	FOCAL	4	"SARM1,SEBOX,SLC46A1,VTN"
TCGA.AG.3909.01A	17	26854219	26938534	39	-0.6546	SMALL-LOSS	FOCAL	6	"ALDOC,FOXN1,PIGS,SGK494,SPAG5,UNC119"
TCGA.AA.A00N.01A	17	26875563	26890784	11	-1.195	SMALL-LOSS	FOCAL	2	"PIGS,UNC119"
TCGA.AA.A00N.01A	17	26901477	26910833	8	-0.7723	SMALL-LOSS	FOCAL	2	"ALDOC,SPAG5"
TCGA.AA.A004.01A	17	26904653	26912851	10	-0.7552	SMALL-LOSS	FOCAL	1	SPAG5
TCGA.AA.A010.01A	17	26910501	26925838	11	-0.6378	SMALL-LOSS	FOCAL	1	SPAG5
TCGA.AA.A00N.01A	17	26911655	26940032	13	-1.2598	SMALL-LOSS	FOCAL	2	"SGK494,SPAG5"
TCGA.AA.A010.01A	17	26938534	26970144	38	-0.9734	SMALL-LOSS	FOCAL	2	"KIAA0100,SGK494"
TCGA.AA.A00N.01A	17	26940254	26963932	24	-0.6565	SMALL-LOSS	FOCAL	2	"KIAA0100,SGK494"
TCGA.AG.4009.01A	17	26961487	26975955	16	-0.7895	SMALL-LOSS	FOCAL	2	"KIAA0100,SDF2"
TCGA.AG.3909.01A	17	26963932	26968890	8	-1.0371	SMALL-LOSS	FOCAL	1	KIAA0100
TCGA.CK.5914.01A	17	26964862	26982255	15	-0.5921	SMALL-LOSS	FOCAL	2	"KIAA0100,SDF2"
TCGA.AA.A010.01A	17	27020665	27045093	20	-0.7731	SMALL-LOSS	FOCAL	4	"NARR,PROCA1,RAB34,SUPT6H"
TCGA.CK.5914.01A	17	27046959	27068394	20	-0.6153	SMALL-LOSS	FOCAL	3	"NEK8,RPL23A,TLCD1"
TCGA.AG.3909.01A	17	27047319	27075945	21	-0.7423	SMALL-LOSS	FOCAL	4	"NEK8,RPL23A,TLCD1,TRAF4"
TCGA.AG.4009.01A	17	27050534	27075945	16	-0.9167	SMALL-LOSS	FOCAL	4	"NEK8,RPL23A,TLCD1,TRAF4"
TCGA.AA.A00N.01A	17	27052875	27075945	17	-0.7406	SMALL-LOSS	FOCAL	3	"NEK8,TLCD1,TRAF4"
TCGA.AA.A00N.01A	17	27212575	27282893	23	-0.7149	SMALL-LOSS	FOCAL	4	"DHRS13,FLOT2,PHF12,SEZ6"
TCGA.AG.A01W.01A	17	27375782	27404339	11	-0.5795	SMALL-LOSS	FOCAL	3	"MYO18A,PIPOX,TIAF1"
TCGA.AA.A010.01A	17	27613020	27620764	3	-1.1887	SMALL-LOSS	FOCAL	1	NUFIP2
TCGA.AG.A01W.01A	17	27828583	27831569	5	-0.7859	SMALL-LOSS	FOCAL	1	TAOK1
TCGA.AA.A00N.01A	17	27844424	27975106	44	-0.736	SMALL-LOSS	FOCAL	7	"ABHD15,ANKRD13B,CORO6,GIT1,SSH2,TAOK1,TP53I13"
TCGA.AG.4009.01A	17	27857413	27948220	28	-0.5284	SMALL-LOSS	FOCAL	6	"ABHD15,ANKRD13B,CORO6,GIT1,TAOK1,TP53I13"
TCGA.AA.A02K.01A	17	27908282	27910464	4	-0.598	SMALL-LOSS	FOCAL	1	GIT1
TCGA.AA.A010.01A	17	27939689	27962969	13	-0.7874	SMALL-LOSS	FOCAL	3	"ANKRD13B,CORO6,SSH2"
TCGA.AA.A00N.01A	17	28268739	28296092	5	-0.9436	SMALL-LOSS	FOCAL	1	EFCAB5
TCGA.AA.A00N.01A	17	28545119	28711970	22	-0.5877	SMALL-LOSS	FOCAL	4	"BLMH,CPD,SLC6A4,TMIGD1"
TCGA.F4.6461	17	28682452	28911842	32	-0.5392	SMALL-LOSS	FOCAL	3	"CPD,GOSR1,TBC1D29"
TCGA.EI.6513	17	29039939	29054354	3	-0.8599	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	17	29164177	29219578	17	-0.9933	SMALL-LOSS	FOCAL	1	ATAD5
TCGA.AZ.4684.01A	17	29164177	29219578	17	-0.9569	SMALL-LOSS	FOCAL	1	ATAD5
TCGA.AA.A00N.01A	17	29657266	29708839	21	-1.1549	SMALL-LOSS	FOCAL	1	NF1
TCGA.AG.3909.01A	17	29661809	29683959	13	-0.7067	SMALL-LOSS	FOCAL	1	NF1
TCGA.AA.3850	17	29697250	29699415	3	-1.02965	SMALL-LOSS	FOCAL	1	NF1
TCGA.AA.A024.01A	17	29848137	29849304	3	-1.1973	SMALL-LOSS	FOCAL	1	RAB11FIP4
TCGA.AA.A01Q.01A	17	29848137	30192325	17	-0.6303	SMALL-LOSS	FOCAL	3	"COPRS,RAB11FIP4,UTP6"
TCGA.AG.3909.01A	17	29848896	29854804	4	-0.7569	SMALL-LOSS	FOCAL	1	RAB11FIP4
TCGA.AA.A00N.01A	17	29899079	30315333	34	-0.7369	SMALL-LOSS	FOCAL	3	"COPRS,SUZ12,UTP6"
TCGA.AA.A010.01A	17	30212959	30781466	89	-0.6407	SMALL-LOSS	FOCAL	8	"C17orf75,LRRC37B,PSMD11,RHBDL3,RHOT1,SUZ12,UTP6,ZNF207"
TCGA.CK.5914.01A	17	30315333	30469970	21	-0.6043	SMALL-LOSS	FOCAL	3	"LRRC37B,RHOT1,SUZ12"
TCGA.AG.3909.01A	17	30348057	30519173	19	-1.1158	SMALL-LOSS	FOCAL	2	"LRRC37B,RHOT1"
TCGA.AG.A01W.01A	17	30377470	30467941	7	-0.7495	SMALL-LOSS	FOCAL	1	LRRC37B
TCGA.A6.3808.01A	17	30469269	30696266	49	-0.5892	SMALL-LOSS	FOCAL	4	"C17orf75,RHBDL3,RHOT1,ZNF207"
TCGA.CK.5914.01A	17	30643180	30689872	18	-0.8252	SMALL-LOSS	FOCAL	3	"C17orf75,RHBDL3,ZNF207"
TCGA.AG.3909.01A	17	30658745	30689872	16	-0.8128	SMALL-LOSS	FOCAL	2	"C17orf75,ZNF207"
TCGA.AA.A00N.01A	17	30668981	30689872	7	-0.7158	SMALL-LOSS	FOCAL	2	"C17orf75,ZNF207"
TCGA.CK.5914.01A	17	30773912	30821739	14	-0.6959	SMALL-LOSS	FOCAL	3	"CDK5R1,MYO1D,PSMD11"
TCGA.AA.A00N.01A	17	31258525	31267792	6	-0.7422	SMALL-LOSS	FOCAL	1	TMEM98
TCGA.A6.6138	17	32242034	32951804	421	-0.5418	SMALL-LOSS	FOCAL	9	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,TMEM132E"
TCGA.CM.5341	17	32440094	32581251	93	-0.5257	SMALL-LOSS	FOCAL	1	ASIC2
TCGA.A6.6653	17	32811786	32840692	27	-0.7368	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	17	32904505	32964189	11	-0.6067	SMALL-LOSS	FOCAL	2	"C17orf102,TMEM132E"
TCGA.AG.4009.01A	17	32904505	32964744	12	-0.6755	SMALL-LOSS	FOCAL	2	"C17orf102,TMEM132E"
TCGA.AA.A00N.01A	17	32904505	33324699	36	-0.5338	SMALL-LOSS	FOCAL	5	"C17orf102,CCT6B,LIG3,TMEM132E,ZNF830"
TCGA.AA.A01Q.01A	17	32953094	32964744	10	-1.0104	SMALL-LOSS	FOCAL	1	TMEM132E
TCGA.AA.3968	17	33252069	33454414	45	-0.5282	SMALL-LOSS	FOCAL	6	"CCT6B,FNDC8,LIG3,RAD51D,RFFL,ZNF830"
TCGA.AA.A010.01A	17	33288225	33328891	17	-0.6574	SMALL-LOSS	FOCAL	3	"CCT6B,LIG3,ZNF830"
TCGA.AA.A00N.01A	17	33427915	33486352	31	-0.6759	SMALL-LOSS	FOCAL	4	"FNDC8,NLE1,RAD51D,UNC45B"
TCGA.AG.3909.01A	17	33427915	33486352	30	-0.6693	SMALL-LOSS	FOCAL	4	"FNDC8,NLE1,RAD51D,UNC45B"
TCGA.AG.4015	17	33515163	33539527	5	-0.7054	SMALL-LOSS	FOCAL	2	"SLC35G3,UNC45B"
TCGA.A6.6138	17	33969406	34211428	40	-0.5878	SMALL-LOSS	FOCAL	8	"AP2B1,C17orf50,CCL5,GAS2L2,HEATR9,MMP28,RASL10B,TAF15"
TCGA.AA.A00N.01A	17	34036199	34169331	35	-0.6971	SMALL-LOSS	FOCAL	6	"AP2B1,C17orf50,GAS2L2,MMP28,RASL10B,TAF15"
TCGA.AG.A01W.01A	17	34144965	34180757	15	-0.6704	SMALL-LOSS	FOCAL	1	TAF15
TCGA.AY.A71X	17	34443799	34456072	6	-1.2653	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A026	17	34443799	34816255	15	-0.6822	SMALL-LOSS	FOCAL	8	"CCL3L1,CCL3L3,CCL4L1,CCL4L2,LOC101060321,TBC1D3B,TBC1D3F,TBC1D3H"
TCGA.CM.6163	17	34446914	34477385	12	-0.6767	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3695	17	34447401	34455575	3	-1.3063	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	17	34842490	34858890	9	-0.8614	SMALL-LOSS	FOCAL	2	"MYO19,ZNHIT3"
TCGA.CK.5914.01A	17	34888275	34953177	18	-1.313	SMALL-LOSS	FOCAL	4	"DHRS11,GGNBP2,MYO19,PIGW"
TCGA.AA.A00N.01A	17	34948393	35343889	21	-0.6226	SMALL-LOSS	FOCAL	4	"AATF,DHRS11,LHX1,MRM1"
TCGA.AG.A01W.01A	17	35094330	35118070	5	-0.7367	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	17	35295456	35311053	5	-1.0411	SMALL-LOSS	FOCAL	2	"AATF,LHX1"
TCGA.AG.A01W.01A	17	35463022	35506826	15	-0.8162	SMALL-LOSS	FOCAL	1	ACACA
TCGA.AA.3509.01A	17	35696710	35825483	19	-0.6124	SMALL-LOSS	FOCAL	3	"ACACA,C17orf78,TADA2A"
TCGA.AA.A00N.01A	17	35696710	35836880	24	-0.545	SMALL-LOSS	FOCAL	3	"ACACA,C17orf78,TADA2A"
TCGA.A6.3808.01A	17	35732964	35990021	59	-0.5873	SMALL-LOSS	FOCAL	6	"ACACA,C17orf78,DDX52,DUSP14,SYNRG,TADA2A"
TCGA.AG.A01W.01A	17	35862717	35898293	13	-0.531	SMALL-LOSS	FOCAL	2	"DUSP14,SYNRG"
TCGA.CK.5914.01A	17	35913199	36002091	28	-0.6113	SMALL-LOSS	FOCAL	2	"DDX52,SYNRG"
TCGA.AA.A00N.01A	17	35914010	35981143	19	-1.2193	SMALL-LOSS	FOCAL	2	"DDX52,SYNRG"
TCGA.AG.3909.01A	17	35914010	35985908	21	-0.6547	SMALL-LOSS	FOCAL	2	"DDX52,SYNRG"
TCGA.AA.A010.01A	17	36517539	36552064	8	-1.0631	SMALL-LOSS	FOCAL	1	SOCS7
TCGA.AA.A010.01A	17	36666133	36720317	16	-0.5451	SMALL-LOSS	FOCAL	2	"ARHGAP23,SRCIN1"
TCGA.AG.4009.01A	17	36714412	36896497	24	-0.6632	SMALL-LOSS	FOCAL	5	"C17orf96,CISD3,MLLT6,PCGF2,SRCIN1"
TCGA.AA.A01Q.01A	17	36829557	36881729	19	-0.8568	SMALL-LOSS	FOCAL	2	"C17orf96,MLLT6"
TCGA.AG.A01W.01A	17	36910988	36914797	7	-0.6198	SMALL-LOSS	FOCAL	1	PSMB3
TCGA.AA.A010.01A	17	36916637	36971075	21	-0.549	SMALL-LOSS	FOCAL	3	"CWC25,PIP4K2B,PSMB3"
TCGA.CK.5914.01A	17	37093378	37101166	5	-1.2065	SMALL-LOSS	FOCAL	1	FBXO47
TCGA.AA.A00N.01A	17	37093378	37119106	10	-0.7109	SMALL-LOSS	FOCAL	1	FBXO47
TCGA.AA.A010.01A	17	37099796	37113372	5	-0.6867	SMALL-LOSS	FOCAL	1	FBXO47
TCGA.AA.3509.01A	17	37101166	37119106	6	-0.9508	SMALL-LOSS	FOCAL	1	FBXO47
TCGA.EI.6509	17	37149572	37386898	48	-0.8604	SMALL-LOSS	FOCAL	5	"ARL5C,CACNB1,PLXDC1,RPL19,STAC2"
TCGA.AA.A010.01A	17	37313073	37321261	5	-0.5936	SMALL-LOSS	FOCAL	1	ARL5C
TCGA.CK.5914.01A	17	37313073	37370988	32	-0.657	SMALL-LOSS	FOCAL	4	"ARL5C,CACNB1,RPL19,STAC2"
TCGA.AG.3909.01A	17	37334225	37347676	10	-0.6045	SMALL-LOSS	FOCAL	1	CACNB1
TCGA.AA.A01Q.01A	17	37334225	37381624	21	-0.5663	SMALL-LOSS	FOCAL	3	"CACNB1,RPL19,STAC2"
TCGA.AG.A01W.01A	17	37352905	37358109	9	-1.0579	SMALL-LOSS	FOCAL	2	"CACNB1,RPL19"
TCGA.AA.A00N.01A	17	37368496	37373302	7	-0.6388	SMALL-LOSS	FOCAL	1	STAC2
TCGA.AA.3509.01A	17	37417661	37665885	39	-0.6516	SMALL-LOSS	FOCAL	3	"CDK12,FBXL20,MED1"
TCGA.AZ.4684.01A	17	37417661	37665885	39	-0.6808	SMALL-LOSS	FOCAL	3	"CDK12,FBXL20,MED1"
TCGA.AA.A00N.01A	17	37499377	37604023	18	-0.5542	SMALL-LOSS	FOCAL	2	"FBXL20,MED1"
TCGA.AG.A01W.01A	17	37607242	37617497	6	-0.9282	SMALL-LOSS	FOCAL	1	MED1
TCGA.EI.6509	17	37682656	37804857	17	-0.9517	SMALL-LOSS	FOCAL	4	"CDK12,NEUROD2,PPP1R1B,STARD3"
TCGA.AA.A010.01A	17	37761697	37791812	9	-1.0453	SMALL-LOSS	FOCAL	2	"NEUROD2,PPP1R1B"
TCGA.AG.3909.01A	17	37761697	37900273	53	-0.6982	SMALL-LOSS	FOCAL	9	"ERBB2,GRB7,MIEN1,NEUROD2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.CK.5914.01A	17	37761697	37901960	62	-0.6015	SMALL-LOSS	FOCAL	9	"ERBB2,GRB7,MIEN1,NEUROD2,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.AA.A01Q.01A	17	37786144	37886419	49	-0.6475	SMALL-LOSS	FOCAL	7	"ERBB2,MIEN1,PGAP3,PNMT,PPP1R1B,STARD3,TCAP"
TCGA.CK.5914.01A	17	37988280	38032933	9	-0.7739	SMALL-LOSS	FOCAL	2	"IKZF3,ZPBP2"
TCGA.AG.3909.01A	17	38020289	38032933	8	-0.9289	SMALL-LOSS	FOCAL	2	"IKZF3,ZPBP2"
TCGA.CK.5914.01A	17	38127725	38133032	8	-0.738	SMALL-LOSS	FOCAL	1	GSDMA
TCGA.AA.A00N.01A	17	38127725	38144885	12	-1.2258	SMALL-LOSS	FOCAL	2	"GSDMA,PSMD3"
TCGA.AG.3909.01A	17	38127725	38144885	11	-1.1115	SMALL-LOSS	FOCAL	2	"GSDMA,PSMD3"
TCGA.AA.A010.01A	17	38182371	38340821	52	-0.9383	SMALL-LOSS	FOCAL	6	"CASC3,MED24,MSL1,NR1D1,RAPGEFL1,THRA"
TCGA.CK.5914.01A	17	38185954	38253291	25	-0.6477	SMALL-LOSS	FOCAL	3	"MED24,NR1D1,THRA"
TCGA.AA.A00N.01A	17	38191915	38209506	3	-1.1116	SMALL-LOSS	FOCAL	1	MED24
TCGA.AG.4009.01A	17	38282405	38290476	8	-0.6491	SMALL-LOSS	FOCAL	1	MSL1
TCGA.AG.3909.01A	17	38282405	38349864	29	-1.0212	SMALL-LOSS	FOCAL	3	"CASC3,MSL1,RAPGEFL1"
TCGA.AG.4009.01A	17	38340444	38349864	9	-0.7457	SMALL-LOSS	FOCAL	1	RAPGEFL1
TCGA.AA.A00N.01A	17	38447271	38563750	39	-0.6878	SMALL-LOSS	FOCAL	4	"CDC6,GJD3,RARA,TOP2A"
TCGA.AG.A01W.01A	17	38453117	38473094	7	-0.5345	SMALL-LOSS	FOCAL	2	"CDC6,RARA"
TCGA.AA.A010.01A	17	38497594	38634473	46	-1.0265	SMALL-LOSS	FOCAL	5	"GJD3,IGFBP4,RARA,TNS4,TOP2A"
TCGA.AG.A01W.01A	17	38499328	38598590	22	-0.6218	SMALL-LOSS	FOCAL	3	"GJD3,RARA,TOP2A"
TCGA.CK.5914.01A	17	38560988	38572945	13	-0.7134	SMALL-LOSS	FOCAL	1	TOP2A
TCGA.AA.A00N.01A	17	38784985	38788409	5	-0.528	SMALL-LOSS	FOCAL	1	SMARCE1
TCGA.CK.5914.01A	17	38801762	38816187	5	-0.6898	SMALL-LOSS	FOCAL	2	"KRT222,SMARCE1"
TCGA.CK.5914.01A	17	38933211	39022849	27	-0.5951	SMALL-LOSS	FOCAL	5	"KRT10,KRT12,KRT27,KRT28,TMEM99"
TCGA.AA.A010.01A	17	38955134	38991757	10	-0.5829	SMALL-LOSS	FOCAL	3	"KRT10,KRT28,TMEM99"
TCGA.AG.A01W.01A	17	38961362	39076335	12	-0.629	SMALL-LOSS	FOCAL	4	"KRT10,KRT12,KRT20,TMEM99"
TCGA.AA.A00N.01A	17	39197421	39240907	7	-0.7395	SMALL-LOSS	FOCAL	6	"KRTAP1-1,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP4-7"
TCGA.CM.6166	17	39203712	39210142	3	-0.8089	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	17	39217596	39218969	4	-1.3134	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	17	39250873	39260595	5	-0.577	SMALL-LOSS	FOCAL	1	KRTAP4-8
TCGA.AA.3968	17	39373040	39444288	13	-0.865	SMALL-LOSS	FOCAL	7	"KRTAP9-2,KRTAP9-3,KRTAP9-4,KRTAP9-6,KRTAP9-7,KRTAP9-8,KRTAP9-9"
TCGA.AG.A016.01A	17	39421853	39471603	5	-0.6884	SMALL-LOSS	FOCAL	5	"KRTAP16-1,KRTAP17-1,KRTAP29-1,KRTAP9-6,KRTAP9-7"
TCGA.AG.3909.01A	17	39504687	39553396	20	-0.6155	SMALL-LOSS	FOCAL	4	"KRT31,KRT33A,KRT33B,KRT34"
TCGA.AA.A00N.01A	17	39659499	39888950	49	-0.5296	SMALL-LOSS	FOCAL	10	"EIF1,GAST,HAP1,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT9"
TCGA.AG.3909.01A	17	39680413	39846965	27	-0.5992	SMALL-LOSS	FOCAL	6	"EIF1,KRT14,KRT16,KRT17,KRT19,KRT9"
TCGA.AG.3909.01A	17	39983631	40025680	16	-1.2821	SMALL-LOSS	FOCAL	4	"ACLY,KLHL10,KLHL11,NT5C3B"
TCGA.CK.5914.01A	17	39983631	40040425	24	-0.9796	SMALL-LOSS	FOCAL	4	"ACLY,KLHL10,KLHL11,NT5C3B"
TCGA.AF.3914.01A	17	40024014	40040425	11	-1.0738	SMALL-LOSS	FOCAL	1	ACLY
TCGA.AA.A010.01A	17	40183609	40254196	6	-0.9982	SMALL-LOSS	FOCAL	2	"DHX58,ZNF385C"
TCGA.AA.A01Q.01A	17	40321447	40342184	12	-0.8879	SMALL-LOSS	FOCAL	3	"GHDC,HCRT,KCNH4"
TCGA.AG.3909.01A	17	40556697	40622079	6	-0.7002	SMALL-LOSS	FOCAL	2	"ATP6V0A1,PTRF"
TCGA.CK.5914.01A	17	40556697	40622079	6	-0.5742	SMALL-LOSS	FOCAL	2	"ATP6V0A1,PTRF"
TCGA.AA.A01Q.01A	17	40673005	40726069	25	-0.6132	SMALL-LOSS	FOCAL	6	"ATP6V0A1,COASY,HSD17B1,MLX,NAGLU,PSMC3IP"
TCGA.AA.A00A.01A	17	40689377	40690634	3	-0.5848	SMALL-LOSS	FOCAL	1	NAGLU
TCGA.AG.A00C.01A	17	40689377	40690634	3	-0.7646	SMALL-LOSS	FOCAL	1	NAGLU
TCGA.AG.3909.01A	17	40692918	40818057	45	-0.6374	SMALL-LOSS	FOCAL	8	"COASY,FAM134C,HSD17B1,MLX,NAGLU,PSMC3IP,TUBG1,TUBG2"
TCGA.AA.A02E.01A	17	40720434	40815348	32	-1.2766	SMALL-LOSS	FOCAL	5	"FAM134C,MLX,PSMC3IP,TUBG1,TUBG2"
TCGA.CK.5914.01A	17	40721221	40726069	7	-1.1536	SMALL-LOSS	FOCAL	2	"MLX,PSMC3IP"
TCGA.AA.A00N.01A	17	40729186	40925704	84	-0.5301	SMALL-LOSS	FOCAL	10	"CCR10,CNTNAP1,EZH1,FAM134C,PLEKHH3,PSMC3IP,RAMP2,TUBG1,TUBG2,VPS25"
TCGA.AA.A010.01A	17	40811803	40843802	33	-1.0163	SMALL-LOSS	FOCAL	4	"CCR10,CNTNAP1,PLEKHH3,TUBG2"
TCGA.AG.3909.01A	17	40831544	40845277	16	-0.7292	SMALL-LOSS	FOCAL	2	"CCR10,CNTNAP1"
TCGA.AA.A010.01A	17	40844485	40870435	20	-0.6901	SMALL-LOSS	FOCAL	2	"CNTNAP1,EZH1"
TCGA.CK.5914.01A	17	40874794	41003311	57	-0.6305	SMALL-LOSS	FOCAL	10	"AOC2,AOC3,BECN1,CNTD1,COA3,EZH1,PSME3,RAMP2,VPS25,WNK4"
TCGA.AG.3909.01A	17	40914335	40940691	17	-1.0653	SMALL-LOSS	FOCAL	3	"RAMP2,VPS25,WNK4"
TCGA.AG.4009.01A	17	40914335	40940691	17	-0.7146	SMALL-LOSS	FOCAL	3	"RAMP2,VPS25,WNK4"
TCGA.AA.A010.01A	17	40926624	40930928	4	-1.1078	SMALL-LOSS	FOCAL	1	VPS25
TCGA.AA.A01Q.01A	17	40926624	40932708	5	-0.9805	SMALL-LOSS	FOCAL	2	"VPS25,WNK4"
TCGA.AF.3914.01A	17	40939299	40940691	4	-0.8085	SMALL-LOSS	FOCAL	1	WNK4
TCGA.AG.3909.01A	17	40945560	40966495	17	-0.5655	SMALL-LOSS	FOCAL	4	"BECN1,CNTD1,COA3,WNK4"
TCGA.AG.3909.01A	17	40986287	41002057	10	-0.5491	SMALL-LOSS	FOCAL	2	"AOC2,PSME3"
TCGA.AF.3914.01A	17	41107817	41180407	30	-0.7498	SMALL-LOSS	FOCAL	8	"AARSD1,IFI35,PTGES3L,PTGES3L-AARSD1,RND2,RPL27,RUNDC1,VAT1"
TCGA.AG.4009.01A	17	41113170	41141340	8	-0.5284	SMALL-LOSS	FOCAL	4	"AARSD1,PTGES3L,PTGES3L-AARSD1,RUNDC1"
TCGA.AA.A00N.01A	17	41121088	41180407	27	-0.7898	SMALL-LOSS	FOCAL	7	"IFI35,PTGES3L,PTGES3L-AARSD1,RND2,RPL27,RUNDC1,VAT1"
TCGA.AA.A010.01A	17	41139226	41177318	17	-1.189	SMALL-LOSS	FOCAL	5	"IFI35,RND2,RPL27,RUNDC1,VAT1"
TCGA.AA.A00N.01A	17	41256829	41332752	10	-1.1001	SMALL-LOSS	FOCAL	2	"BRCA1,NBR1"
TCGA.AG.3909.01A	17	41275974	41291886	3	-0.8079	SMALL-LOSS	FOCAL	1	BRCA1
TCGA.F4.6461	17	41569024	42019493	137	-0.559	SMALL-LOSS	FOCAL	10	"C17orf105,CD300LG,DHX8,DUSP3,ETV4,MEOX1,MPP2,MPP3,PPY,SOST"
TCGA.CK.5914.01A	17	41857783	41861143	5	-1.2455	SMALL-LOSS	FOCAL	1	C17orf105
TCGA.AG.A01L.01A	17	42159908	42170413	8	-1.0648	SMALL-LOSS	FOCAL	1	HDAC5
TCGA.AA.A010.01A	17	42188038	42231872	8	-0.812	SMALL-LOSS	FOCAL	2	"C17orf53,HDAC5"
TCGA.AA.A01Q.01A	17	42188038	42429336	63	-0.5843	SMALL-LOSS	FOCAL	10	"ASB16,ATXN7L3,C17orf53,GRN,HDAC5,RUNDC3A,SLC25A39,SLC4A1,TMUB2,UBTF"
TCGA.AA.A00N.01A	17	42222495	42293847	37	-1.1999	SMALL-LOSS	FOCAL	5	"ASB16,ATXN7L3,C17orf53,TMUB2,UBTF"
TCGA.AG.4009.01A	17	42254011	42273676	11	-0.804	SMALL-LOSS	FOCAL	3	"ASB16,ATXN7L3,TMUB2"
TCGA.CK.5914.01A	17	42265048	42293847	23	-1.0839	SMALL-LOSS	FOCAL	3	"ATXN7L3,TMUB2,UBTF"
TCGA.AG.3909.01A	17	42272385	42293847	19	-1.2587	SMALL-LOSS	FOCAL	2	"ATXN7L3,UBTF"
TCGA.AG.4009.01A	17	42274260	42295467	15	-1.2092	SMALL-LOSS	FOCAL	2	"ATXN7L3,UBTF"
TCGA.AG.4009.01A	17	42386153	42429336	18	-0.5737	SMALL-LOSS	FOCAL	3	"GRN,RUNDC3A,SLC25A39"
TCGA.AF.3914.01A	17	42389899	42437254	21	-1.222	SMALL-LOSS	FOCAL	4	"FAM171A2,GRN,RUNDC3A,SLC25A39"
TCGA.AA.A00N.01A	17	42389899	42483242	43	-0.6341	SMALL-LOSS	FOCAL	6	"FAM171A2,GPATCH8,GRN,ITGA2B,RUNDC3A,SLC25A39"
TCGA.AA.A02K.01A	17	42428369	42449662	8	-0.579	SMALL-LOSS	FOCAL	3	"FAM171A2,GRN,ITGA2B"
TCGA.AG.A01L.01A	17	42451702	42501670	15	-0.759	SMALL-LOSS	FOCAL	2	"GPATCH8,ITGA2B"
TCGA.AA.A00N.01A	17	42739648	42761182	11	-1.2351	SMALL-LOSS	FOCAL	2	"C17orf104,CCDC43"
TCGA.AA.A010.01A	17	42800210	42815673	7	-0.6527	SMALL-LOSS	FOCAL	1	DBF4B
TCGA.AA.A010.01A	17	42847027	42932243	25	-0.835	SMALL-LOSS	FOCAL	4	"ADAM11,EFTUD2,GJC1,HIGD1B"
TCGA.AA.A010.01A	17	43012152	43112095	9	-0.8341	SMALL-LOSS	FOCAL	3	"C1QL1,DCAKD,KIF18B"
TCGA.AA.A00N.01A	17	43195657	43333676	40	-0.7633	SMALL-LOSS	FOCAL	6	"ACBD4,FMNL1,HEXIM1,HEXIM2,PLCD3,SPATA32"
TCGA.AG.4009.01A	17	43197655	43215092	6	-0.5151	SMALL-LOSS	FOCAL	2	"ACBD4,PLCD3"
TCGA.CK.5914.01A	17	43213454	43333676	34	-0.77	SMALL-LOSS	FOCAL	5	"ACBD4,FMNL1,HEXIM1,HEXIM2,SPATA32"
TCGA.AG.A01L.01A	17	43226630	43227178	2	-1.0493	SMALL-LOSS	FOCAL	1	HEXIM1
TCGA.AG.4009.01A	17	43307914	43314597	6	-0.5199	SMALL-LOSS	FOCAL	1	FMNL1
TCGA.AA.A01Q.01A	17	43307914	43334451	24	-1.0302	SMALL-LOSS	FOCAL	2	"FMNL1,SPATA32"
TCGA.AG.4009.01A	17	43314872	43323525	12	-0.9608	SMALL-LOSS	FOCAL	1	FMNL1
TCGA.AA.A010.01A	17	43334451	43344766	7	-0.8361	SMALL-LOSS	FOCAL	2	"MAP3K14,SPATA32"
TCGA.AA.A00N.01A	17	43472805	43517474	15	-0.6301	SMALL-LOSS	FOCAL	2	"ARHGAP27,PLEKHM1"
TCGA.AG.3909.01A	17	43473340	43482243	8	-0.9348	SMALL-LOSS	FOCAL	1	ARHGAP27
TCGA.AA.A01Q.01A	17	43473340	43517474	13	-0.8998	SMALL-LOSS	FOCAL	2	"ARHGAP27,PLEKHM1"
TCGA.AA.A010.01A	17	43480040	43535525	14	-1.2872	SMALL-LOSS	FOCAL	2	"ARHGAP27,PLEKHM1"
TCGA.AG.A01L.01A	17	43922235	44430146	34	-0.6075	SMALL-LOSS	FOCAL	7	"ARL17A,ARL17B,KANSL1,LRRC37A,MAPT,SPPL2C,STH"
TCGA.EI.6514	17	43943050	43954685	3	-0.842	SMALL-LOSS	FOCAL	0	None
TCGA.CM.5861	17	44162596	44353884	49	-0.5794	SMALL-LOSS	FOCAL	1	KANSL1
TCGA.A6.6141	17	44166499	44353884	45	-0.5659	SMALL-LOSS	FOCAL	1	KANSL1
TCGA.AA.3524	17	44213711	44351928	33	-0.6908	SMALL-LOSS	FOCAL	1	KANSL1
TCGA.AA.A00N.01A	17	44408764	44632447	11	-0.8247	SMALL-LOSS	FOCAL	4	"ARL17A,ARL17B,LRRC37A,LRRC37A2"
TCGA.AG.3909.01A	17	44617480	44630690	9	-0.6795	SMALL-LOSS	FOCAL	2	"ARL17A,LRRC37A2"
TCGA.AG.A01L.01A	17	44617480	44707698	11	-0.9922	SMALL-LOSS	FOCAL	3	"ARL17A,LRRC37A2,NSF"
TCGA.DM.A28M.01A	17	44625704	44627792	6	-1.0052	SMALL-LOSS	FOCAL	2	"ARL17A,LRRC37A2"
TCGA.AF.2692	17	44869062	44930344	14	-0.6425	SMALL-LOSS	FOCAL	2	"WNT3,WNT9B"
TCGA.AA.A00N.01A	17	45387439	45456485	12	-0.7854	SMALL-LOSS	FOCAL	2	"EFCAB13,ITGB3"
TCGA.AG.3909.01A	17	45387439	45456485	12	-0.5148	SMALL-LOSS	FOCAL	2	"EFCAB13,ITGB3"
TCGA.CK.5914.01A	17	45387439	45456485	12	-0.7021	SMALL-LOSS	FOCAL	2	"EFCAB13,ITGB3"
TCGA.AA.A010.01A	17	45447742	45481867	10	-0.8618	SMALL-LOSS	FOCAL	1	EFCAB13
TCGA.AG.4009.01A	17	45468782	45623230	12	-0.85	SMALL-LOSS	FOCAL	2	"EFCAB13,NPEPPS"
TCGA.AA.A00N.01A	17	45730009	45774403	22	-1.3049	SMALL-LOSS	FOCAL	2	"KPNB1,TBKBP1"
TCGA.AA.A01Q.01A	17	45890906	46030312	41	-0.5691	SMALL-LOSS	FOCAL	8	"LRRC46,MRPL10,OSBPL7,PNPO,PRR15L,SCRN2,SP2,SP6"
TCGA.AA.A00N.01A	17	46020624	46190616	41	-0.841	SMALL-LOSS	FOCAL	7	"CBX1,CDK5RAP3,COPZ2,NFE2L1,PNPO,PRR15L,SNX11"
TCGA.AG.4009.01A	17	46106430	46114484	6	-0.5423	SMALL-LOSS	FOCAL	1	COPZ2
TCGA.AF.3914.01A	17	46109464	46114484	6	-1.2266	SMALL-LOSS	FOCAL	1	COPZ2
TCGA.AA.3850	17	46252501	46373670	34	-0.58915	SMALL-LOSS	FOCAL	1	SKAP1
TCGA.AA.3982	17	46255091	46261735	9	-0.8561	SMALL-LOSS	FOCAL	1	SKAP1
TCGA.AA.3941	17	46259253	46373670	31	-0.9045	SMALL-LOSS	FOCAL	1	SKAP1
TCGA.AG.4009.01A	17	46621873	46700245	15	-0.9036	SMALL-LOSS	FOCAL	8	"HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9"
TCGA.AA.A01Q.01A	17	46621873	46799620	19	-0.7345	SMALL-LOSS	FOCAL	9	"HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,PRAC1"
TCGA.AF.3914.01A	17	46627688	46700245	14	-1.0746	SMALL-LOSS	FOCAL	7	"HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9"
TCGA.AA.A010.01A	17	46970702	47004274	10	-0.714	SMALL-LOSS	FOCAL	2	"ATP5G1,UBE2Z"
TCGA.AG.3909.01A	17	47075077	47120750	10	-0.8818	SMALL-LOSS	FOCAL	1	IGF2BP1
TCGA.AA.3941	17	47192497	47192775	3	-1.1462	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	17	47210092	47245996	11	-0.6218	SMALL-LOSS	FOCAL	1	B4GALNT2
TCGA.AG.4009.01A	17	47210381	47219360	3	-0.8859	SMALL-LOSS	FOCAL	1	B4GALNT2
TCGA.AA.A01Q.01A	17	47579378	47590038	5	-0.9698	SMALL-LOSS	FOCAL	1	NGFR
TCGA.AA.A00N.01A	17	47778750	47784289	8	-1.0891	SMALL-LOSS	FOCAL	1	SLC35B1
TCGA.AA.A01Q.01A	17	47778750	47784289	8	-0.664	SMALL-LOSS	FOCAL	1	SLC35B1
TCGA.AG.A01L.01A	17	47780168	47782475	4	-1.2617	SMALL-LOSS	FOCAL	1	SLC35B1
TCGA.CK.5914.01A	17	47869200	47882680	4	-0.5632	SMALL-LOSS	FOCAL	1	KAT7
TCGA.AA.A00N.01A	17	47869200	48222466	70	-0.725	SMALL-LOSS	FOCAL	9	"DLX3,DLX4,FLJ45513,ITGA3,KAT7,PDK2,PPP1R9B,SAMD14,TAC4"
TCGA.AA.A010.01A	17	47886427	47904018	9	-0.9032	SMALL-LOSS	FOCAL	1	KAT7
TCGA.AG.3909.01A	17	48148153	48216555	34	-0.8743	SMALL-LOSS	FOCAL	4	"ITGA3,PDK2,PPP1R9B,SAMD14"
TCGA.AA.A01Q.01A	17	48166432	48202205	16	-1.1277	SMALL-LOSS	FOCAL	3	"ITGA3,PDK2,SAMD14"
TCGA.AG.4009.01A	17	48174756	48216555	18	-0.6402	SMALL-LOSS	FOCAL	3	"PDK2,PPP1R9B,SAMD14"
TCGA.AF.3914.01A	17	48174756	48226459	23	-1.0822	SMALL-LOSS	FOCAL	3	"PDK2,PPP1R9B,SAMD14"
TCGA.AA.A010.01A	17	48226459	48247917	9	-0.9452	SMALL-LOSS	FOCAL	2	"PPP1R9B,SGCA"
TCGA.AA.A01Q.01A	17	48269117	48447789	28	-0.605	SMALL-LOSS	FOCAL	4	"COL1A1,MRPL27,TMEM92,XYLT2"
TCGA.AG.3909.01A	17	48271262	48275753	7	-0.9822	SMALL-LOSS	FOCAL	1	COL1A1
TCGA.AA.A01F.01A	17	48460298	48474547	7	-0.6369	SMALL-LOSS	FOCAL	1	LRRC59
TCGA.AA.A00N.01A	17	48469719	48698971	93	-0.6513	SMALL-LOSS	FOCAL	8	"ACSF2,CACNA1G,CHAD,EPN3,LRRC59,MYCBPAP,RSAD1,SPATA20"
TCGA.AG.4009.01A	17	48538006	48585869	24	-0.5865	SMALL-LOSS	FOCAL	4	"ACSF2,CHAD,MYCBPAP,RSAD1"
TCGA.AF.3914.01A	17	48538934	48646474	59	-0.7814	SMALL-LOSS	FOCAL	7	"ACSF2,CACNA1G,CHAD,EPN3,MYCBPAP,RSAD1,SPATA20"
TCGA.AG.3909.01A	17	48541519	48695979	76	-0.7253	SMALL-LOSS	FOCAL	7	"ACSF2,CACNA1G,CHAD,EPN3,MYCBPAP,RSAD1,SPATA20"
TCGA.CK.5914.01A	17	48545393	48703330	81	-0.6175	SMALL-LOSS	FOCAL	7	"ACSF2,CACNA1G,CHAD,EPN3,MYCBPAP,RSAD1,SPATA20"
TCGA.AA.A01Q.01A	17	48593902	48628852	31	-0.7196	SMALL-LOSS	FOCAL	3	"EPN3,MYCBPAP,SPATA20"
TCGA.CK.5914.01A	17	48768436	48777878	5	-0.9107	SMALL-LOSS	FOCAL	2	"ABCC3,ANKRD40"
TCGA.CK.5914.01A	17	48913252	48940329	3	-0.6472	SMALL-LOSS	FOCAL	2	"TOB1,WFIKKN2"
TCGA.CK.5914.01A	17	49133712	49257910	13	-0.6673	SMALL-LOSS	FOCAL	5	"MBTD1,NME1,NME1-NME2,NME2,SPAG9"
TCGA.AG.3909.01A	17	49237291	49248798	7	-0.8365	SMALL-LOSS	FOCAL	3	"NME1,NME1-NME2,NME2"
TCGA.NH.A50V	17	49517880	50384097	347	-0.5447	SMALL-LOSS	FOCAL	1	CA10
TCGA.AA.3667	17	49693436	49709709	9	-0.5189	SMALL-LOSS	FOCAL	1	CA10
TCGA.AA.3667	17	49909328	49911621	3	-0.8481	SMALL-LOSS	FOCAL	1	CA10
TCGA.AA.3850	17	49909328	52881654	852	-0.68725	SMALL-LOSS	FOCAL	3	"C17orf112,CA10,KIF2B"
TCGA.AA.3811	17	49910196	52890787	853	-0.5175	SMALL-LOSS	FOCAL	3	"C17orf112,CA10,KIF2B"
TCGA.AA.3941	17	49932013	52890787	844	-1.1254	SMALL-LOSS	FOCAL	3	"C17orf112,CA10,KIF2B"
TCGA.NH.A50V	17	50530747	51687783	326	-0.5386	SMALL-LOSS	FOCAL	1	C17orf112
TCGA.DM.A1D0	17	50628255	50665820	8	-1.0454	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3655	17	51158969	52140830	261	-1.0682	SMALL-LOSS	FOCAL	1	KIF2B
TCGA.AA.3968	17	51578977	51946189	94	-1.1838	SMALL-LOSS	FOCAL	1	KIF2B
TCGA.AA.3667	17	52317556	52416118	17	-0.8347	SMALL-LOSS	FOCAL	0	None
TCGA.AH.6643	17	52345343	52473551	15	-0.8766	SMALL-LOSS	FOCAL	0	None
TCGA.4N.A93T	17	52948588	53008872	36	-1.3028	SMALL-LOSS	FOCAL	1	TOM1L1
TCGA.AY.A71X	17	53924174	54412107	225	-0.8081	SMALL-LOSS	FOCAL	1	ANKFN1
TCGA.AA.3977	17	53970741	53973002	4	-0.9134	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3977	17	54052323	54053697	3	-1.3178	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	17	54103068	54108256	5	-0.5749	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	17	54164934	54585659	176	-0.6846	SMALL-LOSS	FOCAL	1	ANKFN1
TCGA.DC.6681	17	54226804	54229941	3	-1.2308	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01F.01A	17	54534200	54559677	7	-0.6942	SMALL-LOSS	FOCAL	1	ANKFN1
TCGA.AA.A010.01A	17	54672612	54939951	15	-0.8998	SMALL-LOSS	FOCAL	3	"C17orf67,DGKE,NOG"
TCGA.AG.3891.01A	17	54872418	54912135	4	-0.577	SMALL-LOSS	FOCAL	2	"C17orf67,DGKE"
TCGA.CM.4746	17	55329212	55621540	153	-0.6115	SMALL-LOSS	FOCAL	1	MSI2
TCGA.AG.4009.01A	17	55334368	55339431	4	-0.5596	SMALL-LOSS	FOCAL	1	MSI2
TCGA.AG.3909.01A	17	55334368	56232485	37	-0.5349	SMALL-LOSS	FOCAL	7	"CCDC182,CUEDC1,DYNLL2,MRPS23,MSI2,SRSF1,VEZF1"
TCGA.AA.A01Z	17	55386637	55482336	50	-0.8598	SMALL-LOSS	FOCAL	1	MSI2
TCGA.AA.A01Z	17	55494744	55964833	221	-0.8128	SMALL-LOSS	FOCAL	4	"CCDC182,CUEDC1,MRPS23,MSI2"
TCGA.AA.3968	17	55528594	55534439	5	-1.1277	SMALL-LOSS	FOCAL	1	MSI2
TCGA.5M.AATE	17	56212513	56214093	3	-1.0011	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3975	17	56212513	56214093	3	-0.9042	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01S	17	56212513	56214093	3	-0.75195	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	17	56293409	56437472	55	-0.7375	SMALL-LOSS	FOCAL	6	"BZRAP1,LPO,MKS1,MPO,RNF43,SUPT4H1"
TCGA.AA.A010.01A	17	56381645	56428716	30	-0.5793	SMALL-LOSS	FOCAL	2	"BZRAP1,SUPT4H1"
TCGA.AA.A01Q.01A	17	56381645	56432227	31	-0.5675	SMALL-LOSS	FOCAL	3	"BZRAP1,RNF43,SUPT4H1"
TCGA.AF.3914.01A	17	56387833	56665220	83	-0.766	SMALL-LOSS	FOCAL	8	"BZRAP1,C17orf47,HSF5,MTMR4,RNF43,SEPT4,SUPT4H1,TEX14"
TCGA.AG.4009.01A	17	56388895	56404897	14	-0.6942	SMALL-LOSS	FOCAL	1	BZRAP1
TCGA.AG.3909.01A	17	56544194	56619938	31	-0.8402	SMALL-LOSS	FOCAL	4	"C17orf47,HSF5,MTMR4,SEPT4"
TCGA.AA.A00N.01A	17	56557357	56636767	34	-1.2164	SMALL-LOSS	FOCAL	5	"C17orf47,HSF5,MTMR4,SEPT4,TEX14"
TCGA.AG.4009.01A	17	56568973	56619938	29	-0.9992	SMALL-LOSS	FOCAL	3	"C17orf47,MTMR4,SEPT4"
TCGA.CK.5914.01A	17	57105797	57141642	10	-0.8685	SMALL-LOSS	FOCAL	1	TRIM37
TCGA.AA.A00N.01A	17	57165635	57311794	25	-0.7587	SMALL-LOSS	FOCAL	5	"GDPD1,PRR11,SKA2,SMG8,TRIM37"
TCGA.CK.5914.01A	17	57465609	57684342	20	-0.6959	SMALL-LOSS	FOCAL	2	"DHX40,YPEL2"
TCGA.AZ.4684.01A	17	57937636	58041906	32	-0.5175	SMALL-LOSS	FOCAL	3	"RNFT1,RPS6KB1,TUBD1"
TCGA.AA.A010.01A	17	58007460	58137229	30	-0.6658	SMALL-LOSS	FOCAL	3	"HEATR6,RNFT1,RPS6KB1"
TCGA.AA.A00N.01A	17	58024904	58257853	39	-1.038	SMALL-LOSS	FOCAL	5	"CA4,HEATR6,RNFT1,RPS6KB1,USP32"
TCGA.CK.5914.01A	17	58030331	58125577	13	-0.7852	SMALL-LOSS	FOCAL	2	"HEATR6,RNFT1"
TCGA.CK.5914.01A	17	58147025	58153463	6	-0.6819	SMALL-LOSS	FOCAL	1	HEATR6
TCGA.AA.A01F.01A	17	58149525	58232603	6	-0.8336	SMALL-LOSS	FOCAL	2	"CA4,HEATR6"
TCGA.AG.3909.01A	17	58149525	58234741	8	-0.77	SMALL-LOSS	FOCAL	2	"CA4,HEATR6"
TCGA.A6.6653	17	59455221	59519943	24	-0.5575	SMALL-LOSS	FOCAL	3	"BCAS3,C17orf82,TBX2"
TCGA.AG.4009.01A	17	59469320	59543149	7	-0.5493	SMALL-LOSS	FOCAL	4	"BCAS3,C17orf82,TBX2,TBX4"
TCGA.AA.A00N.01A	17	59469320	59555937	14	-0.5516	SMALL-LOSS	FOCAL	4	"BCAS3,C17orf82,TBX2,TBX4"
TCGA.CK.5914.01A	17	59469320	59557198	15	-0.7167	SMALL-LOSS	FOCAL	4	"BCAS3,C17orf82,TBX2,TBX4"
TCGA.A6.3808.01A	17	59469320	59861594	28	-0.8255	SMALL-LOSS	FOCAL	6	"BCAS3,BRIP1,C17orf82,NACA2,TBX2,TBX4"
TCGA.AG.3909.01A	17	59489349	59557198	6	-0.5695	SMALL-LOSS	FOCAL	2	"C17orf82,TBX4"
TCGA.CM.6170	17	59800035	61518219	210	-0.6357	SMALL-LOSS	FOCAL	10	"BRIP1,CYB561,EFCAB3,INTS2,MARCH10,MED13,METTL2A,MRC2,TANC2,TLK2"
TCGA.AA.A00N.01A	17	60087859	60140378	8	-1.0693	SMALL-LOSS	FOCAL	1	MED13
TCGA.AG.3909.01A	17	60087859	60140378	8	-0.6368	SMALL-LOSS	FOCAL	1	MED13
TCGA.AG.4009.01A	17	60087859	60140378	8	-0.5731	SMALL-LOSS	FOCAL	1	MED13
TCGA.AM.5820	17	60429906	60662221	22	-0.5153	SMALL-LOSS	FOCAL	3	"EFCAB3,METTL2A,TLK2"
TCGA.AG.A026	17	60670930	60766482	12	-0.5771	SMALL-LOSS	FOCAL	2	"MRC2,TLK2"
TCGA.AA.A010.01A	17	60749331	60802251	22	-1.0493	SMALL-LOSS	FOCAL	2	"MARCH10,MRC2"
TCGA.AG.A026	17	60768845	60789404	7	-1.2624	SMALL-LOSS	FOCAL	2	"MARCH10,MRC2"
TCGA.CI.6622	17	61518219	61622702	24	-0.7845	SMALL-LOSS	FOCAL	3	"ACE,CYB561,KCNH6"
TCGA.CM.6170	17	61536307	61582891	15	-1.117	SMALL-LOSS	FOCAL	1	ACE
TCGA.AA.A01Q.01A	17	61555244	61565971	15	-1.1591	SMALL-LOSS	FOCAL	1	ACE
TCGA.AG.3909.01A	17	61565971	61621331	18	-0.6848	SMALL-LOSS	FOCAL	2	"ACE,KCNH6"
TCGA.AA.A01Q.01A	17	61566255	61571682	6	-0.7795	SMALL-LOSS	FOCAL	1	ACE
TCGA.AG.3909.01A	17	61681872	61685161	4	-0.7994	SMALL-LOSS	FOCAL	1	TACO1
TCGA.AA.A00N.01A	17	61787804	61805612	6	-0.9384	SMALL-LOSS	FOCAL	1	STRADA
TCGA.AA.A010.01A	17	61800571	61805612	3	-0.794	SMALL-LOSS	FOCAL	1	STRADA
TCGA.AG.3909.01A	17	61824182	61864363	12	-0.9654	SMALL-LOSS	FOCAL	2	"CCDC47,DDX42"
TCGA.AA.A010.01A	17	61882389	61915590	38	-0.813	SMALL-LOSS	FOCAL	4	"DDX42,FTSJ3,PSMC5,SMARCD2"
TCGA.CK.5914.01A	17	61899305	61915590	23	-0.5362	SMALL-LOSS	FOCAL	3	"FTSJ3,PSMC5,SMARCD2"
TCGA.AG.4009.01A	17	61908416	61914233	8	-0.5351	SMALL-LOSS	FOCAL	2	"PSMC5,SMARCD2"
TCGA.AA.A01Q.01A	17	62007160	62022024	8	-0.6362	SMALL-LOSS	FOCAL	2	"CD79B,SCN4A"
TCGA.CK.5914.01A	17	62018100	62049440	22	-0.532	SMALL-LOSS	FOCAL	1	SCN4A
TCGA.CK.5914.01A	17	62481793	62512804	17	-1.001	SMALL-LOSS	FOCAL	3	"CEP95,DDX5,POLG2"
TCGA.AA.A00N.01A	17	62850638	62865151	9	-1.192	SMALL-LOSS	FOCAL	1	LRRC37A3
TCGA.AG.3909.01A	17	62851926	62865151	8	-0.6088	SMALL-LOSS	FOCAL	1	LRRC37A3
TCGA.AA.A01Z	17	62953910	63368615	150	-0.7685	SMALL-LOSS	FOCAL	2	"GNA13,RGS9"
TCGA.CA.5254	17	62990883	63015003	4	-0.8551	SMALL-LOSS	FOCAL	1	GNA13
TCGA.AG.3909.01A	17	63526043	63537523	8	-0.7621	SMALL-LOSS	FOCAL	1	AXIN2
TCGA.AA.A00N.01A	17	63526043	63553887	11	-0.9637	SMALL-LOSS	FOCAL	1	AXIN2
TCGA.AA.A01Q.01A	17	63526043	63553887	10	-0.8893	SMALL-LOSS	FOCAL	1	AXIN2
TCGA.AG.A01Y	17	63676149	63733090	26	-0.7904	SMALL-LOSS	FOCAL	1	CEP112
TCGA.AG.3575	17	64048669	64048786	3	-0.9465	SMALL-LOSS	FOCAL	1	CEP112
TCGA.AY.A8YK	17	64599440	64628387	20	-1.0583	SMALL-LOSS	FOCAL	1	PRKCA
TCGA.AG.3581	17	65548539	65600306	22	-0.5425	SMALL-LOSS	FOCAL	1	PITPNC1
TCGA.CK.5914.01A	17	65978285	66303598	22	-1.1369	SMALL-LOSS	FOCAL	6	"AMZ2,ARSG,BPTF,C17orf58,KPNA2,SLC16A6"
TCGA.AA.A01Q.01A	17	66033188	66252917	13	-0.5179	SMALL-LOSS	FOCAL	2	"AMZ2,KPNA2"
TCGA.AA.A010.01A	17	66265200	66303598	6	-0.926	SMALL-LOSS	FOCAL	2	"ARSG,SLC16A6"
TCGA.AG.3909.01A	17	66265200	66303598	6	-0.9787	SMALL-LOSS	FOCAL	2	"ARSG,SLC16A6"
TCGA.AA.A00N.01A	17	66440582	66526376	13	-1.3065	SMALL-LOSS	FOCAL	2	"PRKAR1A,WIPI1"
TCGA.AG.3909.01A	17	66440582	66535406	14	-0.5204	SMALL-LOSS	FOCAL	3	"FAM20A,PRKAR1A,WIPI1"
TCGA.AA.A010.01A	17	66511499	66533569	10	-1.2049	SMALL-LOSS	FOCAL	2	"FAM20A,PRKAR1A"
TCGA.AA.3968	17	66766455	67120024	132	-1.0908	SMALL-LOSS	FOCAL	3	"ABCA6,ABCA8,ABCA9"
TCGA.AA.3941	17	66808442	70320660	1274	-0.6153	SMALL-LOSS	FOCAL	9	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,KCNJ16,KCNJ2,MAP2K6,SOX9"
TCGA.AA.A010.01A	17	67092349	67129733	20	-0.9225	SMALL-LOSS	FOCAL	1	ABCA6
TCGA.AA.A010.01A	17	67170375	67178779	5	-0.8256	SMALL-LOSS	FOCAL	1	ABCA10
TCGA.AG.3909.01A	17	67181571	67197610	11	-1.0159	SMALL-LOSS	FOCAL	1	ABCA10
TCGA.CK.5914.01A	17	67183795	67217886	15	-0.8823	SMALL-LOSS	FOCAL	1	ABCA10
TCGA.AA.A02H.01A	17	67188683	67217886	12	-0.5903	SMALL-LOSS	FOCAL	1	ABCA10
TCGA.AA.A010.01A	17	67287340	67310408	11	-1.2697	SMALL-LOSS	FOCAL	1	ABCA5
TCGA.AA.A00N.01A	17	67297278	67310408	8	-0.8251	SMALL-LOSS	FOCAL	1	ABCA5
TCGA.AG.3581	17	67642747	70502865	1128	-0.5726	SMALL-LOSS	FOCAL	3	"KCNJ16,KCNJ2,SOX9"
TCGA.AG.3611.01A	17	68128227	70119637	6	-1.0415	SMALL-LOSS	FOCAL	3	"KCNJ16,KCNJ2,SOX9"
TCGA.AA.3930.01A	17	68171152	68174571	6	-0.6978	SMALL-LOSS	FOCAL	1	KCNJ2
TCGA.AG.4009.01A	17	68171152	70643661	6	-0.557	SMALL-LOSS	FOCAL	3	"KCNJ2,SLC39A11,SOX9"
TCGA.CK.5914.01A	17	68171762	68175319	6	-0.8949	SMALL-LOSS	FOCAL	1	KCNJ2
TCGA.AA.A02K.01A	17	68908878	68926889	5	-0.562	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6648	17	69022266	70727354	732	-0.6805	SMALL-LOSS	FOCAL	2	"SLC39A11,SOX9"
TCGA.AA.3688	17	69373256	70538292	490	-0.7478	SMALL-LOSS	FOCAL	1	SOX9
TCGA.AY.A8YK	17	69377499	70986345	706	-0.9457	SMALL-LOSS	FOCAL	2	"SLC39A11,SOX9"
TCGA.G4.6322	17	69775623	70387035	275	-0.8944	SMALL-LOSS	FOCAL	1	SOX9
TCGA.AA.3968	17	69887005	70156998	109	-1.1737	SMALL-LOSS	FOCAL	1	SOX9
TCGA.AG.A020	17	70070280	70251556	72	-0.9885	SMALL-LOSS	FOCAL	1	SOX9
TCGA.AA.3850	17	70142117	70142677	3	-1.19035	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3883	17	70142117	70142677	3	-1.2838	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	17	70373387	70390207	9	-0.8055	SMALL-LOSS	FOCAL	0	None
TCGA.AF.A56K	17	70384498	70386706	4	-0.5809	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6138	17	70414132	70538292	52	-0.5862	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3812	17	70507353	70521713	5	-0.5668	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A02K.01A	17	70732736	71080869	5	-0.6629	SMALL-LOSS	FOCAL	1	SLC39A11
TCGA.AG.A01W.01A	17	71051043	71063683	2	-0.8988	SMALL-LOSS	FOCAL	1	SLC39A11
TCGA.CK.5914.01A	17	71165407	71241219	23	-0.8912	SMALL-LOSS	FOCAL	4	"C17orf80,COG1,FAM104A,SSTR2"
TCGA.AA.A00N.01A	17	71165407	71246322	26	-0.9773	SMALL-LOSS	FOCAL	5	"C17orf80,COG1,CPSF4L,FAM104A,SSTR2"
TCGA.AA.A010.01A	17	71205617	71223255	3	-0.5599	SMALL-LOSS	FOCAL	1	FAM104A
TCGA.AA.A010.01A	17	71640109	72233391	8	-0.6319	SMALL-LOSS	FOCAL	4	"LOC100134391,RPL38,SDK2,TTYH2"
TCGA.AA.A01Q.01A	17	72199997	72245422	11	-0.7193	SMALL-LOSS	FOCAL	2	"RPL38,TTYH2"
TCGA.AA.A01Q.01A	17	72322431	72442938	23	-0.6696	SMALL-LOSS	FOCAL	4	"BTBD17,GPR142,GPRC5C,KIF19"
TCGA.AA.A010.01A	17	72338716	72367841	22	-0.7455	SMALL-LOSS	FOCAL	3	"BTBD17,GPR142,KIF19"
TCGA.AG.3909.01A	17	72763038	72773391	8	-0.6116	SMALL-LOSS	FOCAL	3	"NAT9,SLC9A3R1,TMEM104"
TCGA.AD.6890	17	72864767	72876817	3	-0.8585	SMALL-LOSS	FOCAL	2	"FADS6,FDXR"
TCGA.AG.3611.01A	17	72923713	72939664	6	-0.9148	SMALL-LOSS	FOCAL	2	"OTOP2,OTOP3"
TCGA.AA.A010.01A	17	73132112	73177105	8	-0.7806	SMALL-LOSS	FOCAL	2	"HN1,SUMO2"
TCGA.AA.A010.01A	17	73489524	73500916	18	-0.9263	SMALL-LOSS	FOCAL	2	"CASKIN2,KIAA0195"
TCGA.AA.A01Q.01A	17	73509737	73560397	17	-0.8675	SMALL-LOSS	FOCAL	3	"CASKIN2,LLGL2,TSEN54"
TCGA.AG.4009.01A	17	73513601	73520292	7	-0.9984	SMALL-LOSS	FOCAL	1	TSEN54
TCGA.AG.A01W.01A	17	73698594	73731092	12	-0.7335	SMALL-LOSS	FOCAL	2	"ITGB4,SAP30BP"
TCGA.AG.4009.01A	17	73746724	73774964	10	-0.9726	SMALL-LOSS	FOCAL	3	"GALK1,H3F3B,ITGB4"
TCGA.AA.A010.01A	17	73847602	73908221	21	-1.2458	SMALL-LOSS	FOCAL	5	"FBF1,MRPL38,TRIM47,TRIM65,WBP2"
TCGA.AG.4009.01A	17	73870543	73895570	9	-0.5639	SMALL-LOSS	FOCAL	3	"MRPL38,TRIM47,TRIM65"
TCGA.AG.3909.01A	17	73929031	74010959	25	-0.8022	SMALL-LOSS	FOCAL	5	"ACOX1,CDK3,EVPL,FBF1,TEN1"
TCGA.CK.4952.01A	17	74014350	74079230	24	-0.9507	SMALL-LOSS	FOCAL	5	"EVPL,EXOC7,GALR2,SRP68,ZACN"
TCGA.AA.A010.01A	17	74555028	74568668	8	-0.9901	SMALL-LOSS	FOCAL	1	ST6GALNAC2
TCGA.AA.A00N.01A	17	74564740	74716391	23	-0.596	SMALL-LOSS	FOCAL	4	"JMJD6,MXRA7,ST6GALNAC1,ST6GALNAC2"
TCGA.AA.A010.01A	17	74676855	74684135	4	-0.664	SMALL-LOSS	FOCAL	1	MXRA7
TCGA.AG.3909.01A	17	74717832	74740386	14	-0.9446	SMALL-LOSS	FOCAL	4	"JMJD6,METTL23,MFSD11,SRSF2"
TCGA.CK.5914.01A	17	74717832	74740386	15	-1.2924	SMALL-LOSS	FOCAL	4	"JMJD6,METTL23,MFSD11,SRSF2"
TCGA.AA.A010.01A	17	74763412	74878182	8	-0.7488	SMALL-LOSS	FOCAL	2	"MFSD11,MGAT5B"
TCGA.A6.6653	17	75316879	75395442	42	-0.6505	SMALL-LOSS	FOCAL	1	9-Sep
TCGA.AG.3891.01A	17	75478174	75484762	4	-0.854	SMALL-LOSS	FOCAL	1	9-Sep
TCGA.AA.3930.01A	17	75483455	75493326	7	-1.2298	SMALL-LOSS	FOCAL	1	9-Sep
TCGA.AA.3930.01A	17	76093789	76128403	18	-0.6212	SMALL-LOSS	FOCAL	3	"TMC6,TMC8,TNRC6C"
TCGA.AA.A010.01A	17	76128813	76210723	34	-0.5543	SMALL-LOSS	FOCAL	6	"AFMID,BIRC5,C17orf99,SYNGR2,TK1,TMC8"
TCGA.AG.3611.01A	17	76803022	76853574	14	-0.8209	SMALL-LOSS	FOCAL	2	"TIMP2,USP36"
TCGA.AG.4009.01A	17	77073469	77077979	6	-0.708	SMALL-LOSS	FOCAL	1	ENGASE
TCGA.A6.2686	17	77237482	77246389	4	-1.11	SMALL-LOSS	FOCAL	1	RBFOX3
TCGA.A6.6138	17	77245659	77246389	3	-1.1963	SMALL-LOSS	FOCAL	1	RBFOX3
TCGA.AA.3968	17	77365533	77459020	43	-0.5758	SMALL-LOSS	FOCAL	1	RBFOX3
TCGA.AF.A56L	17	77403623	77410858	4	-0.7714	SMALL-LOSS	FOCAL	1	RBFOX3
TCGA.AG.4009.01A	17	77755504	77807711	6	-0.8967	SMALL-LOSS	FOCAL	3	"CBX2,CBX4,CBX8"
TCGA.AA.A01Q.01A	17	77755504	77811577	9	-1.0035	SMALL-LOSS	FOCAL	3	"CBX2,CBX4,CBX8"
TCGA.AA.A010.01A	17	78032279	78117906	37	-0.6668	SMALL-LOSS	FOCAL	3	"CCDC40,EIF4A3,GAA"
TCGA.AG.4009.01A	17	78071033	78091357	11	-0.5997	SMALL-LOSS	FOCAL	2	"CCDC40,GAA"
TCGA.AA.A010.01A	17	78196436	78211257	6	-0.5528	SMALL-LOSS	FOCAL	1	SLC26A11
TCGA.AA.A00N.01A	17	78225065	78269339	11	-0.9384	SMALL-LOSS	FOCAL	2	"RNF213,SLC26A11"
TCGA.A6.3808.01A	17	78225065	78350626	48	-1.1133	SMALL-LOSS	FOCAL	2	"RNF213,SLC26A11"
TCGA.AA.A010.01A	17	78261627	78268508	6	-0.5323	SMALL-LOSS	FOCAL	1	RNF213
TCGA.AG.3909.01A	17	78261627	78269339	7	-0.727	SMALL-LOSS	FOCAL	1	RNF213
TCGA.AA.3861.01A	17	78367118	79182676	78	-1.0592	SMALL-LOSS	FOCAL	8	"AATK,BAIAP2,CEP131,CHMP6,ENDOV,NPTX1,RNF213,RPTOR"
TCGA.AG.3909.01A	17	78765183	78882559	14	-0.9817	SMALL-LOSS	FOCAL	1	RPTOR
TCGA.CM.6169	17	78962944	79437731	58	-0.558	SMALL-LOSS	FOCAL	10	"AATK,BAHCC1,BAIAP2,C17orf89,CEP131,CHMP6,ENTHD2,LOC100130370,SLC38A10,TMEM105"
TCGA.AA.A010.01A	17	78968334	79082685	21	-1.3021	SMALL-LOSS	FOCAL	2	"BAIAP2,CHMP6"
TCGA.AA.A00Q.01A	17	79193643	79202721	2	-0.7834	SMALL-LOSS	FOCAL	2	"CEP131,ENTHD2"
TCGA.AD.6890	17	79255997	79256256	3	-0.6312	SMALL-LOSS	FOCAL	1	SLC38A10
TCGA.AG.3901	17	79255997	79437731	16	-0.6696	SMALL-LOSS	FOCAL	4	"BAHCC1,LOC100130370,SLC38A10,TMEM105"
TCGA.AA.A010.01A	17	79952659	79966896	4	-0.5151	SMALL-LOSS	FOCAL	1	ASPSCR1
TCGA.AG.4009.01A	17	79985214	80021290	20	-0.6689	SMALL-LOSS	FOCAL	6	"DCXR,DUS1L,GPS1,LRRC45,RAC3,RFNG"
TCGA.AA.A010.01A	17	80151579	80223513	17	-1.1654	SMALL-LOSS	FOCAL	3	"CCDC57,CSNK1D,SLC16A3"
TCGA.AG.3611.01A	17	80203802	80223513	7	-0.8529	SMALL-LOSS	FOCAL	1	CSNK1D
TCGA.AA.A010.01A	17	80319990	80391506	15	-1.2369	SMALL-LOSS	FOCAL	4	"HEXDC,OGFOD3,TEX19,UTS2R"
TCGA.AG.4009.01A	17	80696313	80708275	5	-1.2608	SMALL-LOSS	FOCAL	1	FN3K
TCGA.AA.A010.01A	17	80710018	80739417	7	-1.1206	SMALL-LOSS	FOCAL	1	TBCD
TCGA.AA.A00N.01A	17	80881482	81051974	25	-0.8504	SMALL-LOSS	FOCAL	3	"B3GNTL1,METRNL,TBCD"
TCGA.AA.A01Q.01A	17	80904718	81006295	9	-0.6589	SMALL-LOSS	FOCAL	1	B3GNTL1
TCGA.AA.3821	17	80963330	81048658	21	-0.7131	SMALL-LOSS	FOCAL	2	"B3GNTL1,METRNL"
TCGA.QG.A5YX	17	80985634	81048658	12	-0.5494	SMALL-LOSS	FOCAL	2	"B3GNTL1,METRNL"
TCGA.DM.A28E	17	81012184	81048658	3	-0.9367	SMALL-LOSS	FOCAL	1	METRNL
TCGA.AG.3584	17	81022457	81048658	2	-1.0372	SMALL-LOSS	FOCAL	1	METRNL
TCGA.AA.A02O	18	100948	229709	17	-0.6048	SMALL-LOSS	FOCAL	2	"THOC1,USP14"
TCGA.EI.6508	18	100948	463417	145	-0.7525	SMALL-LOSS	FOCAL	3	"COLEC12,THOC1,USP14"
TCGA.AA.3844	18	100948	938931	352	-0.7204	SMALL-LOSS	FOCAL	10	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AG.A00C.01A	18	163296	252479	26	-0.9181	SMALL-LOSS	FOCAL	2	"THOC1,USP14"
TCGA.AG.4009.01A	18	163296	259610	29	-0.602	SMALL-LOSS	FOCAL	2	"THOC1,USP14"
TCGA.AG.A01L.01A	18	163296	649803	52	-0.534	SMALL-LOSS	FOCAL	6	"CETN1,CLUL1,COLEC12,THOC1,TYMSOS,USP14"
TCGA.AG.3909.01A	18	246296	674263	35	-0.6618	SMALL-LOSS	FOCAL	7	"CETN1,CLUL1,COLEC12,ENOSF1,THOC1,TYMS,TYMSOS"
TCGA.CM.4746	18	298552	303388	3	-0.8264	SMALL-LOSS	FOCAL	0	None
TCGA.EI.6508	18	533190	656019	60	-0.7665	SMALL-LOSS	FOCAL	3	"CETN1,CLUL1,TYMSOS"
TCGA.AG.4009.01A	18	580399	688492	24	-0.7833	SMALL-LOSS	FOCAL	5	"CETN1,CLUL1,ENOSF1,TYMS,TYMSOS"
TCGA.AG.A00C.01A	18	736760	3214920	134	-0.7594	SMALL-LOSS	FOCAL	8	"ADCYAP1,EMILIN2,LPIN2,METTL4,MYOM1,NDC80,SMCHD1,YES1"
TCGA.AG.3894	18	855263	863351	4	-0.8317	SMALL-LOSS	FOCAL	0	None
TCGA.AH.6903	18	860939	863351	3	-1.1261	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00L.01A	18	905351	909396	3	-1.1263	SMALL-LOSS	FOCAL	1	ADCYAP1
TCGA.AA.3844	18	939813	2481916	586	-1.2018	SMALL-LOSS	FOCAL	0	None
TCGA.CL.4957	18	1274044	3597524	909	-0.9562	SMALL-LOSS	FOCAL	10	"DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1"
TCGA.DY.A1DF	18	2517897	4451488	812	-0.5315	SMALL-LOSS	FOCAL	10	"DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1"
TCGA.AH.6903	18	2525751	3508294	359	-0.5702	SMALL-LOSS	FOCAL	10	"DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1"
TCGA.AG.A02X.01A	18	2572938	3131335	102	-0.9188	SMALL-LOSS	FOCAL	5	"EMILIN2,LPIN2,MYOM1,NDC80,SMCHD1"
TCGA.AA.A010.01A	18	2606364	2673964	9	-0.925	SMALL-LOSS	FOCAL	2	"NDC80,SMCHD1"
TCGA.AA.A00N.01A	18	2666106	2673964	4	-0.9971	SMALL-LOSS	FOCAL	1	SMCHD1
TCGA.AA.3982	18	2724929	2733564	6	-1.2334	SMALL-LOSS	FOCAL	1	SMCHD1
TCGA.AA.3982	18	2750203	2778381	8	-0.7023	SMALL-LOSS	FOCAL	1	SMCHD1
TCGA.AA.A00N.01A	18	2847789	2929009	17	-0.667	SMALL-LOSS	FOCAL	2	"EMILIN2,LPIN2"
TCGA.AG.3909.01A	18	2884924	2921500	8	-1.0461	SMALL-LOSS	FOCAL	2	"EMILIN2,LPIN2"
TCGA.AF.3914.01A	18	2920254	2924364	6	-0.9331	SMALL-LOSS	FOCAL	1	LPIN2
TCGA.CM.5868	18	3155699	4062037	357	-0.774	SMALL-LOSS	FOCAL	5	"DLGAP1,MYL12A,MYL12B,MYOM1,TGIF1"
TCGA.AA.A010.01A	18	3253195	3277733	6	-0.5506	SMALL-LOSS	FOCAL	2	"MYL12A,MYL12B"
TCGA.AA.3982	18	3265012	3285656	13	-0.7454	SMALL-LOSS	FOCAL	1	MYL12B
TCGA.G4.6310	18	3327240	3966535	230	-0.9109	SMALL-LOSS	FOCAL	2	"DLGAP1,TGIF1"
TCGA.CA.5256	18	3478583	3702370	81	-0.7638	SMALL-LOSS	FOCAL	1	DLGAP1
TCGA.AG.A00C.01A	18	3534165	8376043	156	-0.809	SMALL-LOSS	FOCAL	10	"ARHGAP28,C18orf42,DLGAP1,EPB41L3,L3MBTL4,LAMA1,LRRC30,PTPRM,TMEM200C,ZBTB14"
TCGA.AA.A01S	18	3610253	5744871	866	-0.93095	SMALL-LOSS	FOCAL	4	"C18orf42,DLGAP1,EPB41L3,ZBTB14"
TCGA.AH.6903	18	4080733	7856334	1579	-0.5491	SMALL-LOSS	FOCAL	10	"ARHGAP28,C18orf42,DLGAP1,EPB41L3,L3MBTL4,LAMA1,LRRC30,PTPRM,TMEM200C,ZBTB14"
TCGA.AA.3982	18	4420820	4564125	70	-0.5525	SMALL-LOSS	FOCAL	1	DLGAP1
TCGA.DY.A1DF	18	4458599	8010443	1418	-0.5846	SMALL-LOSS	FOCAL	9	"ARHGAP28,C18orf42,EPB41L3,L3MBTL4,LAMA1,LRRC30,PTPRM,TMEM200C,ZBTB14"
TCGA.DM.A1D4	18	4601572	4710868	25	-0.6923	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D4	18	4757760	5112202	104	-0.7486	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6138	18	5055637	6621571	645	-0.5324	SMALL-LOSS	FOCAL	5	"C18orf42,EPB41L3,L3MBTL4,TMEM200C,ZBTB14"
TCGA.DM.A1D4	18	5233413	5313163	27	-0.7112	SMALL-LOSS	FOCAL	1	ZBTB14
TCGA.D5.6931	18	5261998	5282664	3	-1.0839	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A016.01A	18	5394635	5478212	20	-1.1948	SMALL-LOSS	FOCAL	1	EPB41L3
TCGA.AA.A010.01A	18	5478212	5891919	5	-1.0653	SMALL-LOSS	FOCAL	2	"EPB41L3,TMEM200C"
TCGA.AF.3914.01A	18	5478212	5891919	5	-1.0651	SMALL-LOSS	FOCAL	2	"EPB41L3,TMEM200C"
TCGA.AA.A01C.01A	18	5956188	7050704	93	-0.5818	SMALL-LOSS	FOCAL	3	"ARHGAP28,L3MBTL4,LAMA1"
TCGA.DM.A1HB	18	6104240	6107708	5	-1.1776	SMALL-LOSS	FOCAL	1	L3MBTL4
TCGA.AA.3982	18	6690636	6692745	7	-1.1912	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	18	6943151	7774099	63	-0.6879	SMALL-LOSS	FOCAL	3	"LAMA1,LRRC30,PTPRM"
TCGA.G4.6322	18	7369056	9282141	852	-0.913	SMALL-LOSS	FOCAL	5	"ANKRD12,MTCL1,NDUFV2,PTPRM,RAB12"
TCGA.DT.5265	18	8266632	9152874	482	-0.5455	SMALL-LOSS	FOCAL	5	"ANKRD12,MTCL1,NDUFV2,PTPRM,RAB12"
TCGA.AG.3909.01A	18	8370847	9134134	37	-0.5778	SMALL-LOSS	FOCAL	4	"MTCL1,NDUFV2,PTPRM,RAB12"
TCGA.AA.A00N.01A	18	9263751	9533659	16	-0.594	SMALL-LOSS	FOCAL	3	"ANKRD12,RALBP1,TWSG1"
TCGA.AG.3909.01A	18	9275525	9557197	21	-0.548	SMALL-LOSS	FOCAL	4	"ANKRD12,PPP4R1,RALBP1,TWSG1"
TCGA.AA.A010.01A	18	9886131	10471510	12	-1.1156	SMALL-LOSS	FOCAL	3	"APCDD1,TXNDC2,VAPA"
TCGA.AA.3655	18	9973227	12210446	966	-0.9892	SMALL-LOSS	FOCAL	9	"ANKRD62,APCDD1,CHMP1B,GNAL,IMPA2,MPPE1,NAPG,PIEZO2,SLC35G4"
TCGA.DT.5265	18	10503662	10901806	187	-0.5832	SMALL-LOSS	FOCAL	2	"NAPG,PIEZO2"
TCGA.AG.3909.01A	18	10530704	10540265	6	-0.8372	SMALL-LOSS	FOCAL	1	NAPG
TCGA.CK.5914.01A	18	12009844	12691311	58	-0.7497	SMALL-LOSS	FOCAL	9	"AFG3L2,ANKRD62,CEP76,CIDEA,IMPA2,PSMG2,SLMO1,SPIRE1,TUBB6"
TCGA.AA.A010.01A	18	12325044	12479657	28	-0.7077	SMALL-LOSS	FOCAL	4	"AFG3L2,SLMO1,SPIRE1,TUBB6"
TCGA.AG.A01W.01A	18	12327312	12807127	55	-0.6028	SMALL-LOSS	FOCAL	7	"AFG3L2,CEP76,PSMG2,PTPN2,SLMO1,SPIRE1,TUBB6"
TCGA.G4.6314	18	12349444	13463638	285	-0.8502	SMALL-LOSS	FOCAL	9	"AFG3L2,CEP192,CEP76,LDLRAD4,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1"
TCGA.CK.5914.01A	18	12695215	12785731	14	-1.2648	SMALL-LOSS	FOCAL	3	"CEP76,PSMG2,PTPN2"
TCGA.DY.A1DF	18	12731147	14362421	519	-0.6183	SMALL-LOSS	FOCAL	9	"CEP192,FAM210A,LDLRAD4,MC2R,MC5R,PTPN2,RNMT,SEH1L,ZNF519"
TCGA.AG.4009.01A	18	12785731	12859117	9	-0.5685	SMALL-LOSS	FOCAL	1	PTPN2
TCGA.AA.A010.01A	18	12785731	13019074	28	-0.6122	SMALL-LOSS	FOCAL	3	"CEP192,PTPN2,SEH1L"
TCGA.AG.4009.01A	18	12951778	12986850	9	-1.1773	SMALL-LOSS	FOCAL	1	SEH1L
TCGA.AF.3914.01A	18	12971125	12986850	6	-1.1749	SMALL-LOSS	FOCAL	1	SEH1L
TCGA.AG.A00C.01A	18	12986850	13072961	16	-0.7509	SMALL-LOSS	FOCAL	2	"CEP192,SEH1L"
TCGA.AA.A00N.01A	18	13008408	13019074	6	-0.9379	SMALL-LOSS	FOCAL	1	CEP192
TCGA.CK.5914.01A	18	13008408	13049281	14	-0.6717	SMALL-LOSS	FOCAL	1	CEP192
TCGA.AG.3906.01A	18	13008408	14184036	58	-0.7149	SMALL-LOSS	FOCAL	7	"CEP192,FAM210A,LDLRAD4,MC2R,MC5R,RNMT,ZNF519"
TCGA.CK.5914.01A	18	13069685	13087543	6	-0.6414	SMALL-LOSS	FOCAL	1	CEP192
TCGA.AG.3909.01A	18	13086989	13092329	4	-1.1361	SMALL-LOSS	FOCAL	1	CEP192
TCGA.AG.3909.01A	18	13113534	13387655	6	-1.1151	SMALL-LOSS	FOCAL	2	"CEP192,LDLRAD4"
TCGA.CK.5914.01A	18	13113534	13612647	8	-1.1045	SMALL-LOSS	FOCAL	2	"CEP192,LDLRAD4"
TCGA.AG.3909.01A	18	13438192	14779890	39	-0.6191	SMALL-LOSS	FOCAL	8	"ANKRD30B,FAM210A,LDLRAD4,MC2R,MC5R,POTEC,RNMT,ZNF519"
TCGA.CK.5914.01A	18	13731478	13884704	12	-1.2725	SMALL-LOSS	FOCAL	3	"MC2R,MC5R,RNMT"
TCGA.AA.3941	18	13952634	15215870	161	-0.6082	SMALL-LOSS	FOCAL	3	"ANKRD30B,POTEC,ZNF519"
TCGA.AA.A00N.01A	18	14183599	14769266	18	-1.2452	SMALL-LOSS	FOCAL	2	"ANKRD30B,POTEC"
TCGA.AG.3906.01A	18	14542906	19110255	55	-0.7557	SMALL-LOSS	FOCAL	5	"ANKRD30B,ESCO1,GREB1L,POTEC,ROCK1"
TCGA.EI.6508	18	14799528	18918789	68	-0.8056	SMALL-LOSS	FOCAL	3	"ANKRD30B,GREB1L,ROCK1"
TCGA.AZ.4684.01A	18	14831332	14842810	5	-0.7167	SMALL-LOSS	FOCAL	1	ANKRD30B
TCGA.F4.6463	18	15081796	15158340	8	-0.9584	SMALL-LOSS	FOCAL	0	None
TCGA.AU.3779	18	15081796	19153493	63	-0.8142	SMALL-LOSS	FOCAL	3	"ESCO1,GREB1L,ROCK1"
TCGA.AG.A01W.01A	18	18249929	19617936	117	-0.9446	SMALL-LOSS	FOCAL	6	"ABHD3,ESCO1,GREB1L,MIB1,ROCK1,SNRPD1"
TCGA.EI.6508	18	18965521	19037560	13	-0.7354	SMALL-LOSS	FOCAL	1	GREB1L
TCGA.A6.3808.01A	18	19034280	19283533	41	-0.7215	SMALL-LOSS	FOCAL	4	"ABHD3,ESCO1,GREB1L,SNRPD1"
TCGA.AG.3906.01A	18	19282226	20586259	45	-0.6465	SMALL-LOSS	FOCAL	5	"ABHD3,CTAGE1,GATA6,MIB1,RBBP8"
TCGA.AG.A00C.01A	18	19359395	19444460	18	-0.9299	SMALL-LOSS	FOCAL	1	MIB1
TCGA.QG.A5YX	18	19413818	19950118	142	-1.0434	SMALL-LOSS	FOCAL	2	"GATA6,MIB1"
TCGA.EI.6508	18	19580193	19807070	61	-0.808	SMALL-LOSS	FOCAL	1	GATA6
TCGA.AG.A01W.01A	18	19681439	19732664	15	-1.0393	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	18	19746633	20896592	76	-0.8977	SMALL-LOSS	FOCAL	5	"CABLES1,CTAGE1,GATA6,RBBP8,TMEM241"
TCGA.AG.A00C.01A	18	19761377	21338313	114	-0.52	SMALL-LOSS	FOCAL	10	"ANKRD29,C18orf8,CABLES1,CTAGE1,GATA6,LAMA3,NPC1,RBBP8,RIOK3,TMEM241"
TCGA.AA.3982	18	20254877	20261701	8	-0.9159	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	18	20382973	20444968	11	-0.7647	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3509.01A	18	20948595	21113270	40	-1.2142	SMALL-LOSS	FOCAL	4	"C18orf8,NPC1,RIOK3,TMEM241"
TCGA.AZ.4684.01A	18	20948595	21113270	40	-0.9799	SMALL-LOSS	FOCAL	4	"C18orf8,NPC1,RIOK3,TMEM241"
TCGA.AG.A016.01A	18	21042911	21061085	10	-1.0099	SMALL-LOSS	FOCAL	1	RIOK3
TCGA.AG.4009.01A	18	21084276	21098828	7	-1.0194	SMALL-LOSS	FOCAL	1	C18orf8
TCGA.AA.3509.01A	18	21114368	22025296	156	-0.8009	SMALL-LOSS	FOCAL	7	"ANKRD29,CABYR,IMPACT,LAMA3,NPC1,OSBPL1A,TTC39C"
TCGA.AZ.4684.01A	18	21114368	23598234	170	-0.5259	SMALL-LOSS	FOCAL	10	"ANKRD29,CABYR,HRH4,IMPACT,LAMA3,NPC1,OSBPL1A,SS18,TTC39C,ZNF521"
TCGA.AG.3909.01A	18	21213967	21343332	11	-0.5581	SMALL-LOSS	FOCAL	2	"ANKRD29,LAMA3"
TCGA.AG.A00C.01A	18	21343332	21708820	75	-0.8188	SMALL-LOSS	FOCAL	2	"LAMA3,TTC39C"
TCGA.AG.3891.01A	18	21363937	21427440	20	-0.63	SMALL-LOSS	FOCAL	1	LAMA3
TCGA.AG.3909.01A	18	21416918	21424944	5	-0.8889	SMALL-LOSS	FOCAL	1	LAMA3
TCGA.AA.A00N.01A	18	21703747	21746516	13	-1.1531	SMALL-LOSS	FOCAL	3	"CABYR,OSBPL1A,TTC39C"
TCGA.AG.3909.01A	18	21708820	21743106	9	-1.0205	SMALL-LOSS	FOCAL	3	"CABYR,OSBPL1A,TTC39C"
TCGA.CK.5914.01A	18	21708820	21946817	32	-0.7778	SMALL-LOSS	FOCAL	3	"CABYR,OSBPL1A,TTC39C"
TCGA.EI.6508	18	22080381	22149346	49	-0.7042	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D4	18	22561752	22935145	105	-0.7853	SMALL-LOSS	FOCAL	1	ZNF521
TCGA.AG.3594	18	23502105	27920081	1297	-0.6829	SMALL-LOSS	FOCAL	7	"AQP4,CDH2,CHST9,KCTD1,PSMA8,SS18,TAF4B"
TCGA.AG.A016.01A	18	23632567	28673465	84	-0.9298	SMALL-LOSS	FOCAL	9	"AQP4,CDH2,CHST9,DSC2,DSC3,KCTD1,PSMA8,SS18,TAF4B"
TCGA.CK.5914.01A	18	24035670	24445538	11	-1.1074	SMALL-LOSS	FOCAL	2	"AQP4,KCTD1"
TCGA.NH.A50V	18	24102900	25949621	617	-0.6352	SMALL-LOSS	FOCAL	4	"AQP4,CDH2,CHST9,KCTD1"
TCGA.AZ.5407	18	24158523	24160196	3	-0.6457	SMALL-LOSS	FOCAL	1	KCTD1
TCGA.AA.3850	18	24424911	27853464	985	-0.71125	SMALL-LOSS	FOCAL	3	"AQP4,CDH2,CHST9"
TCGA.AG.3909.01A	18	24436165	24445538	5	-1.0866	SMALL-LOSS	FOCAL	1	AQP4
TCGA.AA.3941	18	24447935	28983499	1385	-1.1464	SMALL-LOSS	FOCAL	7	"CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG4"
TCGA.AA.3982	18	25051088	28608793	1062	-0.7789	SMALL-LOSS	FOCAL	2	"CDH2,DSC3"
TCGA.D5.6898	18	25153161	25239454	35	-0.5516	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5539	18	25185215	26997912	524	-0.8911	SMALL-LOSS	FOCAL	1	CDH2
TCGA.AZ.5407	18	25263607	25271193	3	-0.9224	SMALL-LOSS	FOCAL	0	None
TCGA.CL.4957	18	25357989	26589666	348	-1.0837	SMALL-LOSS	FOCAL	1	CDH2
TCGA.DM.A288	18	25940678	27370118	400	-1.2238	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	18	27881855	28983499	403	-0.60845	SMALL-LOSS	FOCAL	5	"DSC1,DSC2,DSC3,DSG1,DSG4"
TCGA.AA.A010.01A	18	28647959	28673465	15	-1.1494	SMALL-LOSS	FOCAL	1	DSC2
TCGA.CK.5914.01A	18	28721911	28742435	9	-0.9805	SMALL-LOSS	FOCAL	1	DSC1
TCGA.AA.A010.01A	18	29036324	29040769	6	-0.673	SMALL-LOSS	FOCAL	1	DSG3
TCGA.AA.3850	18	29161619	29164044	5	-0.89445	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	18	29477727	29709030	24	-0.8754	SMALL-LOSS	FOCAL	3	"RNF125,RNF138,TRAPPC8"
TCGA.AA.3850	18	29757623	29796405	14	-0.56545	SMALL-LOSS	FOCAL	1	MEP1B
TCGA.CK.5914.01A	18	29784097	29796906	7	-0.8668	SMALL-LOSS	FOCAL	1	MEP1B
TCGA.AA.3941	18	29972723	30488988	195	-0.6832	SMALL-LOSS	FOCAL	2	"GAREM,KLHL14"
TCGA.AA.3982	18	30194053	32015441	421	-0.7751	SMALL-LOSS	FOCAL	4	"ASXL3,CCDC178,KLHL14,NOL4"
TCGA.A6.6653	18	30301807	30303778	3	-1.1721	SMALL-LOSS	FOCAL	1	KLHL14
TCGA.G5.6641	18	30478932	31752641	288	-0.5332	SMALL-LOSS	FOCAL	3	"ASXL3,CCDC178,NOL4"
TCGA.AA.3850	18	30675385	32123995	316	-0.89815	SMALL-LOSS	FOCAL	4	"ASXL3,CCDC178,DTNA,NOL4"
TCGA.AG.3728	18	30769470	32570362	439	-0.6876	SMALL-LOSS	FOCAL	5	"ASXL3,CCDC178,DTNA,MAPRE2,NOL4"
TCGA.AG.A016.01A	18	31251664	31599232	15	-1.2737	SMALL-LOSS	FOCAL	2	"ASXL3,NOL4"
TCGA.AG.A01L.01A	18	31251664	32335877	21	-0.8744	SMALL-LOSS	FOCAL	3	"ASXL3,DTNA,NOL4"
TCGA.AA.3941	18	32362869	32687271	108	-0.6492	SMALL-LOSS	FOCAL	2	"DTNA,MAPRE2"
TCGA.AG.3909.01A	18	32886629	32920143	5	-0.9756	SMALL-LOSS	FOCAL	1	ZNF24
TCGA.AG.3909.01A	18	33048526	33552664	17	-0.903	SMALL-LOSS	FOCAL	3	"C18orf21,GALNT1,INO80C"
TCGA.AG.A00C.01A	18	33234608	33484740	12	-0.8406	SMALL-LOSS	FOCAL	1	GALNT1
TCGA.AA.3509.01A	18	33289551	34387752	87	-0.7964	SMALL-LOSS	FOCAL	8	"C18orf21,ELP2,FHOD3,GALNT1,MOCOS,RPRD1A,SLC39A6,TPGS2"
TCGA.AG.3909.01A	18	33573067	33696620	11	-0.9045	SMALL-LOSS	FOCAL	2	"RPRD1A,SLC39A6"
TCGA.AA.A00N.01A	18	33689548	33722180	16	-1.3103	SMALL-LOSS	FOCAL	2	"ELP2,SLC39A6"
TCGA.CK.5914.01A	18	33702008	33724863	13	-1.2401	SMALL-LOSS	FOCAL	2	"ELP2,SLC39A6"
TCGA.AA.A00N.01A	18	33722762	33785001	19	-0.7331	SMALL-LOSS	FOCAL	2	"ELP2,MOCOS"
TCGA.AG.3909.01A	18	33778596	40857138	97	-0.8284	SMALL-LOSS	FOCAL	8	"CELF4,FHOD3,KIAA1328,MOCOS,PIK3C3,RIT2,SYT4,TPGS2"
TCGA.AG.3894	18	33853627	33891447	18	-0.8453	SMALL-LOSS	FOCAL	1	FHOD3
TCGA.G4.6314	18	33853843	43190599	3034	-0.7979	SMALL-LOSS	FOCAL	9	"CELF4,FHOD3,KIAA1328,PIK3C3,RIT2,SETBP1,SLC14A2,SYT4,TPGS2"
TCGA.CK.5914.01A	18	34310609	34340539	7	-1.2546	SMALL-LOSS	FOCAL	1	FHOD3
TCGA.CA.5254	18	34632337	38998289	1355	-1.1906	SMALL-LOSS	FOCAL	2	"CELF4,KIAA1328"
TCGA.DM.A28F	18	34682969	36981865	762	-0.6352	SMALL-LOSS	FOCAL	2	"CELF4,KIAA1328"
TCGA.AG.A01Y	18	34790415	35185289	148	-1.2825	SMALL-LOSS	FOCAL	2	"CELF4,KIAA1328"
TCGA.AA.A01Q.01A	18	34833726	37202036	13	-0.6414	SMALL-LOSS	FOCAL	1	CELF4
TCGA.DM.A288	18	34920631	36591547	620	-1.2081	SMALL-LOSS	FOCAL	1	CELF4
TCGA.CK.5914.01A	18	35145277	39542412	5	-1.1281	SMALL-LOSS	FOCAL	2	"CELF4,PIK3C3"
TCGA.AA.3941	18	35213819	35699437	170	-0.667	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3728	18	35279457	42804788	2357	-0.7755	SMALL-LOSS	FOCAL	5	"PIK3C3,RIT2,SETBP1,SLC14A2,SYT4"
TCGA.AA.3850	18	35689889	42223720	1979	-0.79575	SMALL-LOSS	FOCAL	3	"PIK3C3,RIT2,SYT4"
TCGA.AA.3870	18	35729528	41687159	1807	-0.7228	SMALL-LOSS	FOCAL	3	"PIK3C3,RIT2,SYT4"
TCGA.AA.3982	18	35835373	42101003	1907	-0.8189	SMALL-LOSS	FOCAL	3	"PIK3C3,RIT2,SYT4"
TCGA.QL.A97D	18	36029163	39042958	906	-0.8342	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6138	18	36622038	40543411	1179	-0.5383	SMALL-LOSS	FOCAL	2	"PIK3C3,RIT2"
TCGA.DM.A288	18	36964397	36966610	4	-0.8113	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A288	18	37131521	39572257	758	-1.1922	SMALL-LOSS	FOCAL	1	PIK3C3
TCGA.A6.6653	18	37376943	37396645	4	-0.5278	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6808	18	39578276	41249141	494	-0.5882	SMALL-LOSS	FOCAL	3	"PIK3C3,RIT2,SYT4"
TCGA.DM.A28F	18	39795040	39875719	25	-0.7993	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	18	40597526	40872401	33	-1.0879	SMALL-LOSS	FOCAL	2	"RIT2,SYT4"
TCGA.AA.3509.01A	18	40857138	43652040	99	-0.7413	SMALL-LOSS	FOCAL	7	"EPG5,PSTPIP2,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SYT4"
TCGA.AZ.4684.01A	18	40857138	43652040	99	-0.5422	SMALL-LOSS	FOCAL	7	"EPG5,PSTPIP2,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SYT4"
TCGA.AG.A01W.01A	18	40896992	41827518	83	-0.6262	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	18	41831657	41858525	7	-1.2243	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3870	18	41893206	42372486	150	-0.6996	SMALL-LOSS	FOCAL	1	SETBP1
TCGA.AG.A01W.01A	18	41938291	42405989	48	-1.042	SMALL-LOSS	FOCAL	1	SETBP1
TCGA.AA.3941	18	42229323	43095004	390	-0.614	SMALL-LOSS	FOCAL	2	"SETBP1,SLC14A2"
TCGA.AA.3870	18	42415089	43631758	543	-0.5623	SMALL-LOSS	FOCAL	6	"EPG5,PSTPIP2,SETBP1,SIGLEC15,SLC14A1,SLC14A2"
TCGA.AA.3941	18	43181135	43186261	7	-1.2188	SMALL-LOSS	FOCAL	1	SLC14A2
TCGA.AG.3909.01A	18	43328275	43619865	63	-0.9499	SMALL-LOSS	FOCAL	4	"EPG5,PSTPIP2,SIGLEC15,SLC14A1"
TCGA.AG.4009.01A	18	43416942	43440028	8	-0.9028	SMALL-LOSS	FOCAL	2	"EPG5,SIGLEC15"
TCGA.CK.5914.01A	18	43416942	43819923	81	-0.6086	SMALL-LOSS	FOCAL	6	"ATP5A1,C18orf25,EPG5,HAUS1,PSTPIP2,SIGLEC15"
TCGA.AG.A00C.01A	18	43440028	43619865	53	-0.7359	SMALL-LOSS	FOCAL	2	"EPG5,PSTPIP2"
TCGA.AG.A01L.01A	18	43445559	44470496	99	-0.5861	SMALL-LOSS	FOCAL	9	"ATP5A1,C18orf25,EPG5,HAUS1,LOXHD1,PIAS2,PSTPIP2,RNF165,ST8SIA5"
TCGA.AZ.4684.01A	18	43664212	43707970	17	-1.1417	SMALL-LOSS	FOCAL	2	"ATP5A1,HAUS1"
TCGA.AG.3909.01A	18	43678067	44036433	20	-0.8203	SMALL-LOSS	FOCAL	4	"ATP5A1,C18orf25,HAUS1,RNF165"
TCGA.AA.3509.01A	18	43795798	44395206	65	-0.6766	SMALL-LOSS	FOCAL	5	"C18orf25,LOXHD1,PIAS2,RNF165,ST8SIA5"
TCGA.AG.3909.01A	18	44260008	44470496	20	-0.8717	SMALL-LOSS	FOCAL	2	"PIAS2,ST8SIA5"
TCGA.AA.3509.01A	18	44559333	45368159	26	-0.631	SMALL-LOSS	FOCAL	6	"HDHD2,IER3IP1,KATNAL2,SKOR2,SMAD2,TCEB3B"
TCGA.AA.A010.01A	18	44579281	44595806	9	-1.0013	SMALL-LOSS	FOCAL	1	KATNAL2
TCGA.AG.3909.01A	18	44579281	44641451	17	-0.6101	SMALL-LOSS	FOCAL	2	"HDHD2,KATNAL2"
TCGA.CK.5914.01A	18	44656568	46956584	51	-0.5625	SMALL-LOSS	FOCAL	8	"CTIF,DYM,HDHD2,IER3IP1,SKOR2,SMAD2,SMAD7,ZBTB7C"
TCGA.AG.4009.01A	18	45368159	45555660	11	-0.6528	SMALL-LOSS	FOCAL	2	"SMAD2,ZBTB7C"
TCGA.AA.A02K.01A	18	45368161	45422843	10	-1.2096	SMALL-LOSS	FOCAL	1	SMAD2
TCGA.AA.A010.01A	18	45377585	45566269	8	-0.5466	SMALL-LOSS	FOCAL	2	"SMAD2,ZBTB7C"
TCGA.AG.3909.01A	18	45377585	46956584	40	-0.8475	SMALL-LOSS	FOCAL	5	"CTIF,DYM,SMAD2,SMAD7,ZBTB7C"
TCGA.AF.2690	18	45682631	46697312	393	-0.7554	SMALL-LOSS	FOCAL	3	"CTIF,DYM,SMAD7"
TCGA.AG.A01W.01A	18	45760764	46042310	15	-1.0334	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6628	18	45911492	45955019	21	-0.5977	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	18	46156147	46829590	38	-1	SMALL-LOSS	FOCAL	3	"CTIF,DYM,SMAD7"
TCGA.AA.A01Q.01A	18	46196979	46474684	11	-0.6078	SMALL-LOSS	FOCAL	2	"CTIF,SMAD7"
TCGA.AA.A00N.01A	18	47008649	47361658	30	-1.3215	SMALL-LOSS	FOCAL	6	"ACAA2,C18orf32,LIPG,MYO5B,RPL17,RPL17-C18orf32"
TCGA.A6.6653	18	47067158	47138508	23	-0.7077	SMALL-LOSS	FOCAL	1	LIPG
TCGA.AF.3914.01A	18	47091647	47329035	17	-1.2416	SMALL-LOSS	FOCAL	2	"ACAA2,LIPG"
TCGA.AG.4009.01A	18	47091647	47352793	18	-1.2241	SMALL-LOSS	FOCAL	3	"ACAA2,LIPG,MYO5B"
TCGA.AA.3980.01A	18	47095760	47116780	7	-1.2242	SMALL-LOSS	FOCAL	1	LIPG
TCGA.CM.6165.01A	18	47101712	47109908	4	-1.2213	SMALL-LOSS	FOCAL	1	LIPG
TCGA.CK.5914.01A	18	47107743	47361658	17	-0.6046	SMALL-LOSS	FOCAL	3	"ACAA2,LIPG,MYO5B"
TCGA.A6.3808.01A	18	47310173	47365466	15	-1.1517	SMALL-LOSS	FOCAL	2	"ACAA2,MYO5B"
TCGA.AG.3728	18	47317162	48516657	535	-0.7508	SMALL-LOSS	FOCAL	10	"ACAA2,CFAP53,CXXC1,ELAC1,MAPK4,MBD1,ME2,MRO,MYO5B,SKA1"
TCGA.AA.A010.01A	18	47339750	47367688	7	-0.6076	SMALL-LOSS	FOCAL	2	"ACAA2,MYO5B"
TCGA.AG.3909.01A	18	47352793	47406687	18	-1.1686	SMALL-LOSS	FOCAL	1	MYO5B
TCGA.AG.A00C.01A	18	47363032	47421291	17	-0.5911	SMALL-LOSS	FOCAL	1	MYO5B
TCGA.AG.A00C.01A	18	47428937	47777864	25	-0.9513	SMALL-LOSS	FOCAL	2	"CFAP53,MYO5B"
TCGA.AG.3909.01A	18	47566464	47777864	7	-0.8389	SMALL-LOSS	FOCAL	2	"CFAP53,MYO5B"
TCGA.CK.5914.01A	18	47764925	47777864	4	-0.5277	SMALL-LOSS	FOCAL	1	CFAP53
TCGA.AA.A00K.01A	18	47777864	47808953	12	-0.9329	SMALL-LOSS	FOCAL	3	"CFAP53,CXXC1,MBD1"
TCGA.AA.A00N.01A	18	47787387	47918422	28	-0.6221	SMALL-LOSS	FOCAL	4	"CFAP53,CXXC1,MBD1,SKA1"
TCGA.CK.5914.01A	18	47787387	47918422	28	-1.1806	SMALL-LOSS	FOCAL	4	"CFAP53,CXXC1,MBD1,SKA1"
TCGA.AG.A00C.01A	18	47787387	48575006	58	-0.5701	SMALL-LOSS	FOCAL	9	"CFAP53,CXXC1,ELAC1,MAPK4,MBD1,ME2,MRO,SKA1,SMAD4"
TCGA.AA.A00Q.01A	18	47795951	47813860	19	-0.577	SMALL-LOSS	FOCAL	2	"CXXC1,MBD1"
TCGA.AG.3891.01A	18	47799000	47902148	18	-0.8636	SMALL-LOSS	FOCAL	3	"CXXC1,MBD1,SKA1"
TCGA.AG.A016.01A	18	47809624	47812872	7	-0.9048	SMALL-LOSS	FOCAL	1	CXXC1
TCGA.AG.3909.01A	18	47917446	51731361	77	-0.8093	SMALL-LOSS	FOCAL	9	"DCC,ELAC1,MAPK4,MBD2,ME2,MEX3C,MRO,SKA1,SMAD4"
TCGA.F4.6855	18	48100354	48677124	201	-1.0907	SMALL-LOSS	FOCAL	5	"ELAC1,MAPK4,ME2,MRO,SMAD4"
TCGA.F4.6461	18	48111044	48609967	181	-0.5306	SMALL-LOSS	FOCAL	5	"ELAC1,MAPK4,ME2,MRO,SMAD4"
TCGA.G4.6314	18	48392764	51745396	1176	-0.7699	SMALL-LOSS	FOCAL	6	"DCC,ELAC1,MBD2,ME2,MEX3C,SMAD4"
TCGA.A6.2674	18	48468780	50720362	852	-0.7145	SMALL-LOSS	FOCAL	5	"DCC,ELAC1,ME2,MEX3C,SMAD4"
TCGA.CA.5256	18	48470706	51669938	1140	-1.2545	SMALL-LOSS	FOCAL	5	"DCC,ELAC1,ME2,MEX3C,SMAD4"
TCGA.AG.A00C.01A	18	48575591	51731361	45	-0.8788	SMALL-LOSS	FOCAL	4	"DCC,MBD2,MEX3C,SMAD4"
TCGA.AA.A00K.01A	18	48581111	51690863	41	-0.5884	SMALL-LOSS	FOCAL	4	"DCC,MBD2,MEX3C,SMAD4"
TCGA.AH.6903	18	48609967	48929022	102	-0.6795	SMALL-LOSS	FOCAL	2	"MEX3C,SMAD4"
TCGA.F4.6461	18	48616655	49216635	227	-1.31	SMALL-LOSS	FOCAL	1	MEX3C
TCGA.AA.3870	18	48658257	49591761	369	-0.7134	SMALL-LOSS	FOCAL	1	MEX3C
TCGA.AA.3941	18	48827497	49128435	133	-0.5815	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	18	49128657	51376225	833	-0.7641	SMALL-LOSS	FOCAL	1	DCC
TCGA.AA.3941	18	49128657	53780233	1484	-0.9521	SMALL-LOSS	FOCAL	9	"C18orf54,CCDC68,DCC,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4"
TCGA.AA.3655	18	49147022	49185868	21	-1.1327	SMALL-LOSS	FOCAL	0	None
TCGA.AH.6903	18	49730155	51759289	735	-0.5803	SMALL-LOSS	FOCAL	2	"DCC,MBD2"
TCGA.G4.6310	18	49793935	50261816	231	-1.0058	SMALL-LOSS	FOCAL	1	DCC
TCGA.AA.3870	18	49853284	49951775	74	-0.637	SMALL-LOSS	FOCAL	1	DCC
TCGA.AA.3870	18	50124927	50866194	284	-0.926	SMALL-LOSS	FOCAL	1	DCC
TCGA.AU.3779	18	50819579	51649474	261	-0.7231	SMALL-LOSS	FOCAL	1	DCC
TCGA.CK.5914.01A	18	51797689	51904483	22	-1.0185	SMALL-LOSS	FOCAL	3	"C18orf54,POLI,STARD6"
TCGA.AA.A00N.01A	18	51809180	51858065	8	-0.6224	SMALL-LOSS	FOCAL	2	"POLI,STARD6"
TCGA.AG.3909.01A	18	52258384	55020041	73	-0.8147	SMALL-LOSS	FOCAL	8	"BOD1L2,CCDC68,DYNAP,RAB27B,ST8SIA3,TCF4,TXNL1,WDR7"
TCGA.G4.6322	18	52533037	53651095	293	-0.5297	SMALL-LOSS	FOCAL	3	"CCDC68,RAB27B,TCF4"
TCGA.AA.3549	18	53066078	54308995	347	-0.6892	SMALL-LOSS	FOCAL	2	"TCF4,TXNL1"
TCGA.AG.A01W.01A	18	53424041	53524678	32	-1.0973	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	18	53801554	54612861	223	-0.6132	SMALL-LOSS	FOCAL	2	"TXNL1,WDR7"
TCGA.AA.A00K.01A	18	54362134	55143652	24	-0.6354	SMALL-LOSS	FOCAL	4	"BOD1L2,ONECUT2,ST8SIA3,WDR7"
TCGA.AG.3891.01A	18	54385178	55020041	17	-0.9784	SMALL-LOSS	FOCAL	3	"BOD1L2,ST8SIA3,WDR7"
TCGA.AG.3891.01A	18	55021596	55247250	15	-0.534	SMALL-LOSS	FOCAL	3	"FECH,ONECUT2,ST8SIA3"
TCGA.AG.3909.01A	18	55102942	55238587	10	-0.7389	SMALL-LOSS	FOCAL	2	"FECH,ONECUT2"
TCGA.AZ.4684.01A	18	55218495	56367624	96	-0.6612	SMALL-LOSS	FOCAL	8	"ALPK2,ATP8B1,FECH,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L"
TCGA.AA.A00N.01A	18	55240431	55338659	27	-1.0686	SMALL-LOSS	FOCAL	4	"ATP8B1,FECH,LOC100505549,NARS"
TCGA.A6.3808.01A	18	55270007	55373680	35	-0.6243	SMALL-LOSS	FOCAL	3	"ATP8B1,LOC100505549,NARS"
TCGA.AG.3909.01A	18	55334265	55916060	20	-0.7023	SMALL-LOSS	FOCAL	3	"ATP8B1,LOC100505549,NEDD4L"
TCGA.AG.A00C.01A	18	55352228	56825819	86	-0.6897	SMALL-LOSS	FOCAL	7	"ALPK2,ATP8B1,LOC101927322,MALT1,NEDD4L,SEC11C,ZNF532"
TCGA.AF.2691	18	55443711	55473650	11	-1.0454	SMALL-LOSS	FOCAL	1	ATP8B1
TCGA.AG.3909.01A	18	55919173	56034931	18	-1.3	SMALL-LOSS	FOCAL	1	NEDD4L
TCGA.AG.3909.01A	18	56037563	56807128	51	-0.6592	SMALL-LOSS	FOCAL	6	"ALPK2,LOC101927322,MALT1,NEDD4L,SEC11C,ZNF532"
TCGA.AA.3861.01A	18	56807128	56985481	15	-1.0754	SMALL-LOSS	FOCAL	4	"CPLX4,GRP,RAX,SEC11C"
TCGA.CK.5914.01A	18	56816695	56979861	12	-0.9819	SMALL-LOSS	FOCAL	4	"CPLX4,GRP,RAX,SEC11C"
TCGA.AA.A00N.01A	18	56816695	57022503	23	-0.8966	SMALL-LOSS	FOCAL	5	"CPLX4,GRP,LMAN1,RAX,SEC11C"
TCGA.AA.3549	18	56947979	58849455	717	-0.6568	SMALL-LOSS	FOCAL	5	"CCBE1,CPLX4,LMAN1,MC4R,PMAIP1"
TCGA.CK.5914.01A	18	57014673	57106716	9	-0.8246	SMALL-LOSS	FOCAL	2	"CCBE1,LMAN1"
TCGA.AG.A00C.01A	18	57026242	59965967	76	-0.7753	SMALL-LOSS	FOCAL	8	"CCBE1,CDH20,KIAA1468,LMAN1,MC4R,PIGN,PMAIP1,RNF152"
TCGA.AG.3909.01A	18	57026242	59972641	77	-0.7753	SMALL-LOSS	FOCAL	8	"CCBE1,CDH20,KIAA1468,LMAN1,MC4R,PIGN,PMAIP1,RNF152"
TCGA.CK.5914.01A	18	57147348	59752373	25	-0.5342	SMALL-LOSS	FOCAL	6	"CCBE1,CDH20,MC4R,PIGN,PMAIP1,RNF152"
TCGA.AA.3977	18	57287397	57295036	4	-0.9408	SMALL-LOSS	FOCAL	1	CCBE1
TCGA.AA.3982	18	57655247	59081387	463	-0.6596	SMALL-LOSS	FOCAL	1	MC4R
TCGA.AA.3941	18	57656297	58473409	251	-0.9549	SMALL-LOSS	FOCAL	1	MC4R
TCGA.AA.3850	18	57662695	57663562	4	-0.94875	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	18	57712913	58468723	229	-0.55255	SMALL-LOSS	FOCAL	1	MC4R
TCGA.AZ.6599	18	58115235	58120858	4	-0.9867	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3811	18	58473802	58529952	19	-0.9697	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	18	58479273	59061978	202	-1.1243	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	18	58487318	59150600	230	-0.51855	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28C	18	58641888	58653200	3	-0.9403	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	18	59933872	60232181	31	-0.9963	SMALL-LOSS	FOCAL	3	"KIAA1468,TNFRSF11A,ZCCHC2"
TCGA.AA.A00N.01A	18	59972641	60382910	25	-0.6692	SMALL-LOSS	FOCAL	4	"KIAA1468,PHLPP1,TNFRSF11A,ZCCHC2"
TCGA.F4.6704	18	59997683	60978585	303	-0.9223	SMALL-LOSS	FOCAL	4	"BCL2,PHLPP1,TNFRSF11A,ZCCHC2"
TCGA.CK.5914.01A	18	60015362	61262226	86	-0.5816	SMALL-LOSS	FOCAL	9	"BCL2,KDSR,PHLPP1,SERPINB12,SERPINB13,SERPINB5,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.AA.3509.01A	18	60035884	61254579	70	-0.7282	SMALL-LOSS	FOCAL	9	"BCL2,KDSR,PHLPP1,SERPINB12,SERPINB13,SERPINB5,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.AG.3909.01A	18	60051947	61002439	36	-0.7122	SMALL-LOSS	FOCAL	5	"BCL2,KDSR,PHLPP1,TNFRSF11A,ZCCHC2"
TCGA.AG.A00C.01A	18	60223384	60795829	28	-0.8263	SMALL-LOSS	FOCAL	3	"BCL2,PHLPP1,ZCCHC2"
TCGA.CM.6165.01A	18	60998988	61026911	8	-0.8828	SMALL-LOSS	FOCAL	1	KDSR
TCGA.AZ.4684.01A	18	61005988	61067748	14	-1.0264	SMALL-LOSS	FOCAL	2	"KDSR,VPS4B"
TCGA.AG.3909.01A	18	61005988	61170531	24	-1.2506	SMALL-LOSS	FOCAL	3	"KDSR,SERPINB5,VPS4B"
TCGA.AA.3850	18	61132578	61135565	4	-1.30035	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A00C.01A	18	61156530	61620625	62	-0.7254	SMALL-LOSS	FOCAL	10	"HMSD,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7"
TCGA.AG.3909.01A	18	61223351	61390201	36	-0.5167	SMALL-LOSS	FOCAL	5	"SERPINB11,SERPINB12,SERPINB13,SERPINB3,SERPINB4"
TCGA.AA.A010.01A	18	61304913	61328249	14	-0.7391	SMALL-LOSS	FOCAL	2	"SERPINB3,SERPINB4"
TCGA.AA.3941	18	61308294	64149700	933	-0.9939	SMALL-LOSS	FOCAL	9	"CDH7,HMSD,SERPINB10,SERPINB11,SERPINB2,SERPINB3,SERPINB4,SERPINB7,SERPINB8"
TCGA.AA.3850	18	61331609	61601365	103	-0.56105	SMALL-LOSS	FOCAL	4	"SERPINB10,SERPINB11,SERPINB2,SERPINB7"
TCGA.AA.3949	18	61384979	61386374	3	-1.2898	SMALL-LOSS	FOCAL	1	SERPINB11
TCGA.AG.3909.01A	18	61449568	61597232	19	-0.8466	SMALL-LOSS	FOCAL	3	"SERPINB10,SERPINB2,SERPINB7"
TCGA.AH.6903	18	61547532	63544364	670	-0.5389	SMALL-LOSS	FOCAL	5	"CDH7,HMSD,SERPINB10,SERPINB2,SERPINB8"
TCGA.AA.A010.01A	18	61568926	61586985	8	-0.9755	SMALL-LOSS	FOCAL	2	"SERPINB10,SERPINB2"
TCGA.AA.A01Q.01A	18	61582699	61600265	6	-0.6029	SMALL-LOSS	FOCAL	1	SERPINB10
TCGA.AA.A00N.01A	18	61582699	61602045	7	-0.942	SMALL-LOSS	FOCAL	1	SERPINB10
TCGA.AA.3850	18	62005827	64148686	673	-0.63635	SMALL-LOSS	FOCAL	1	CDH7
TCGA.A6.6653	18	62038368	62086241	19	-0.7071	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A00C.01A	18	63476913	64239200	21	-1.0696	SMALL-LOSS	FOCAL	2	"CDH19,CDH7"
TCGA.AY.6196	18	63908560	63911360	4	-0.6675	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	18	64263742	67865312	1322	-0.51895	SMALL-LOSS	FOCAL	7	"CCDC102B,CD226,CDH19,DOK6,DSEL,RTTN,TMX3"
TCGA.AA.3842	18	64702697	66751083	803	-1.1235	SMALL-LOSS	FOCAL	3	"CCDC102B,DSEL,TMX3"
TCGA.DM.A288	18	65873179	70757333	1868	-1.2493	SMALL-LOSS	FOCAL	9	"CBLN2,CCDC102B,CD226,DOK6,GTSCR1,NETO1,RTTN,SOCS6,TMX3"
TCGA.AH.6544	18	66255131	66853668	214	-1.252	SMALL-LOSS	FOCAL	2	"CCDC102B,TMX3"
TCGA.AA.A00N.01A	18	66344133	66365122	9	-0.9891	SMALL-LOSS	FOCAL	1	TMX3
TCGA.AA.3842	18	66757786	68784062	724	-1.1087	SMALL-LOSS	FOCAL	5	"CD226,DOK6,GTSCR1,RTTN,SOCS6"
TCGA.AA.A00A.01A	18	67687810	67806783	3	-0.5624	SMALL-LOSS	FOCAL	1	RTTN
TCGA.CA.5256	18	68130297	71104814	1190	-0.7836	SMALL-LOSS	FOCAL	3	"CBLN2,GTSCR1,NETO1"
TCGA.AA.3850	18	71993110	72019709	7	-1.07135	SMALL-LOSS	FOCAL	1	C18orf63
TCGA.AA.3982	18	72349628	72361207	3	-1.2045	SMALL-LOSS	FOCAL	1	ZNF407
TCGA.AF.3911	18	73761400	73897828	95	-1.1779	SMALL-LOSS	FOCAL	0	None
TCGA.AF.3911	18	73908038	74307944	149	-0.604	SMALL-LOSS	FOCAL	2	"C18orf65,ZNF516"
TCGA.AG.3891.01A	18	74074386	74091349	5	-1.0747	SMALL-LOSS	FOCAL	1	ZNF516
TCGA.AG.3891.01A	18	74592032	77679132	88	-0.772	SMALL-LOSS	FOCAL	9	"ATP9B,CTDP1,GALR1,KCNG2,MBP,NFATC1,PQLC1,SALL3,ZNF236"
TCGA.AA.3850	18	75511940	75602182	26	-0.58225	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	18	75794883	75996865	21	-0.9424	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3893	18	75982659	76660692	228	-0.6295	SMALL-LOSS	FOCAL	0	None
TCGA.CK.6746	18	76662713	76664862	3	-1.2182	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3594	18	76669930	77529500	191	-0.6513	SMALL-LOSS	FOCAL	4	"ATP9B,CTDP1,NFATC1,SALL3"
TCGA.AG.3893	18	76672861	76765904	32	-0.6973	SMALL-LOSS	FOCAL	1	SALL3
TCGA.AA.A01Q.01A	18	77089960	77659003	36	-0.6423	SMALL-LOSS	FOCAL	4	"ATP9B,CTDP1,KCNG2,NFATC1"
TCGA.AA.A00N.01A	18	77089960	78005105	68	-1.204	SMALL-LOSS	FOCAL	10	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.CA.5256	18	77097359	77544397	96	-0.8372	SMALL-LOSS	FOCAL	3	"ATP9B,CTDP1,NFATC1"
TCGA.AA.A010.01A	18	77119312	78005105	59	-0.7506	SMALL-LOSS	FOCAL	10	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AG.4009.01A	18	77119312	78005105	45	-0.8338	SMALL-LOSS	FOCAL	10	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.A6.3808.01A	18	77170386	77737546	32	-1.1826	SMALL-LOSS	FOCAL	6	"CTDP1,HSBP1L1,KCNG2,NFATC1,PQLC1,TXNL4A"
TCGA.CA.5256	18	77544654	78015056	121	-1.321	SMALL-LOSS	FOCAL	7	"ADNP2,HSBP1L1,KCNG2,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.AM.5820	18	77708991	78015056	90	-0.5411	SMALL-LOSS	FOCAL	6	"ADNP2,HSBP1L1,PARD6G,PQLC1,RBFA,TXNL4A"
TCGA.CK.4948.01B	18	77726549	78005105	25	-0.5369	SMALL-LOSS	FOCAL	5	"ADNP2,HSBP1L1,PARD6G,RBFA,TXNL4A"
TCGA.CM.5348	18	77926337	78015056	23	-0.5314	SMALL-LOSS	FOCAL	1	PARD6G
TCGA.5M.AATE	18	77984344	78015056	7	-0.5174	SMALL-LOSS	FOCAL	1	PARD6G
TCGA.CM.6679	18	77997605	78015056	6	-0.83395	SMALL-LOSS	FOCAL	1	PARD6G
TCGA.A6.3808.01A	19	110628	307102	9	-0.9806	SMALL-LOSS	FOCAL	3	"MIER2,OR4F17,PPAP2C"
TCGA.AA.A010.01A	19	291223	313452	7	-0.7624	SMALL-LOSS	FOCAL	2	"MIER2,PPAP2C"
TCGA.A6.3808.01A	19	367054	549583	38	-0.7172	SMALL-LOSS	FOCAL	8	"C2CD4C,CDC34,GZMM,MADCAM1,ODF3L2,SHC2,THEG,TPGS1"
TCGA.AA.A010.01A	19	371167	460512	17	-0.5696	SMALL-LOSS	FOCAL	3	"C2CD4C,SHC2,THEG"
TCGA.AG.3906.01A	19	373404	498497	10	-0.7331	SMALL-LOSS	FOCAL	5	"C2CD4C,MADCAM1,ODF3L2,SHC2,THEG"
TCGA.AG.A01W.01A	19	423363	452648	4	-1.0208	SMALL-LOSS	FOCAL	1	SHC2
TCGA.AA.A02K.01A	19	618442	651570	18	-0.6344	SMALL-LOSS	FOCAL	3	"FGF22,POLRMT,RNF126"
TCGA.AG.3909.01A	19	735952	807788	11	-0.5745	SMALL-LOSS	FOCAL	3	"MISP,PALM,PTBP1"
TCGA.AA.A01Q.01A	19	746287	807788	11	-0.6831	SMALL-LOSS	FOCAL	3	"MISP,PALM,PTBP1"
TCGA.AG.4009.01A	19	799327	932366	21	-0.516	SMALL-LOSS	FOCAL	10	"ARID3A,AZU1,CFD,ELANE,KISS1R,LPPR3,MED16,PRTN3,PTBP1,R3HDM4"
TCGA.AA.A02K.01A	19	984308	1020725	14	-0.5504	SMALL-LOSS	FOCAL	3	"GRIN3B,TMEM259,WDR18"
TCGA.AA.A01Q.01A	19	1235435	1244044	3	-0.5205	SMALL-LOSS	FOCAL	2	"ATP5D,C19orf26"
TCGA.AA.A01Q.01A	19	1356347	1376456	13	-1.248	SMALL-LOSS	FOCAL	1	MUM1
TCGA.AA.A01Q.01A	19	1398786	1425821	9	-0.9797	SMALL-LOSS	FOCAL	2	"DAZAP1,GAMT"
TCGA.AA.A010.01A	19	1605283	1782976	19	-1.1867	SMALL-LOSS	FOCAL	4	"ATP8B3,ONECUT3,TCF3,UQCR11"
TCGA.AA.3556	19	1642506	1961892	34	-0.6862	SMALL-LOSS	FOCAL	9	"ABHD17A,ADAT3,ATP8B3,CSNK1G2,KLF16,ONECUT3,REXO1,SCAMP4,TCF3"
TCGA.AA.A010.01A	19	2050749	2099203	8	-0.725	SMALL-LOSS	FOCAL	3	"IZUMO4,MKNK2,MOB3A"
TCGA.AA.A010.01A	19	2102123	2113273	9	-1.1219	SMALL-LOSS	FOCAL	1	AP3D1
TCGA.AG.4009.01A	19	2129039	2180646	6	-0.8051	SMALL-LOSS	FOCAL	2	"AP3D1,DOT1L"
TCGA.AA.A010.01A	19	2164138	2217722	22	-1.0592	SMALL-LOSS	FOCAL	1	DOT1L
TCGA.AG.3909.01A	19	2180646	2208863	11	-1.1559	SMALL-LOSS	FOCAL	1	DOT1L
TCGA.AG.3891.01A	19	2334553	2351402	9	-0.6236	SMALL-LOSS	FOCAL	1	SPPL2B
TCGA.AA.A010.01A	19	2334553	2399019	15	-0.6754	SMALL-LOSS	FOCAL	2	"SPPL2B,TMPRSS9"
TCGA.AA.3967.01A	19	2337400	2351402	9	-1.1427	SMALL-LOSS	FOCAL	1	SPPL2B
TCGA.AG.A01W.01A	19	2340733	2361220	8	-0.892	SMALL-LOSS	FOCAL	1	SPPL2B
TCGA.AA.A010.01A	19	2757314	2852371	30	-0.6265	SMALL-LOSS	FOCAL	4	"SGTA,THOP1,ZNF554,ZNF555"
TCGA.AA.A01Q.01A	19	2757649	2796027	13	-1.0514	SMALL-LOSS	FOCAL	2	"SGTA,THOP1"
TCGA.AG.A01W.01A	19	2778577	2827062	10	-0.5979	SMALL-LOSS	FOCAL	3	"SGTA,THOP1,ZNF554"
TCGA.AG.3909.01A	19	2832284	2939252	14	-1.1106	SMALL-LOSS	FOCAL	5	"ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AA.A010.01A	19	3008808	3019637	9	-1.2581	SMALL-LOSS	FOCAL	1	TLE2
TCGA.AA.A010.01A	19	3110095	3185982	15	-0.5544	SMALL-LOSS	FOCAL	4	"GNA11,GNA15,NCLN,S1PR4"
TCGA.AA.A010.01A	19	3462670	3574292	33	-0.756	SMALL-LOSS	FOCAL	7	"C19orf71,DOHH,FZR1,HMG20B,MFSD12,NFIC,SMIM24"
TCGA.CM.5860	19	3560633	3626785	5	-0.7667	SMALL-LOSS	FOCAL	4	"CACTIN,GIPC3,HMG20B,TBXA2R"
TCGA.AG.4009.01A	19	3728336	3789218	30	-0.5547	SMALL-LOSS	FOCAL	5	"APBA3,MATK,MRPL54,RAX2,TJP3"
TCGA.AA.A010.01A	19	3959978	4123730	41	-1.0405	SMALL-LOSS	FOCAL	5	"DAPK3,EEF2,MAP2K2,PIAS4,ZBTB7A"
TCGA.AG.3891.01A	19	4012873	4037351	6	-0.5605	SMALL-LOSS	FOCAL	1	PIAS4
TCGA.AA.A010.01A	19	4186339	4216550	13	-0.7913	SMALL-LOSS	FOCAL	1	ANKRD24
TCGA.AG.4009.01A	19	4199626	4224367	15	-0.5857	SMALL-LOSS	FOCAL	1	ANKRD24
TCGA.AG.A01W.01A	19	4284661	4305886	8	-0.9045	SMALL-LOSS	FOCAL	3	"FSD1,SHD,TMIGD2"
TCGA.AA.A010.01A	19	4317142	4428619	40	-1.0668	SMALL-LOSS	FOCAL	5	"CHAF1A,FSD1,MPND,SH3GL1,STAP2"
TCGA.AA.A01Q.01A	19	4361550	4417945	13	-1.1028	SMALL-LOSS	FOCAL	2	"CHAF1A,SH3GL1"
TCGA.AG.A01W.01A	19	4720201	4905626	29	-0.5314	SMALL-LOSS	FOCAL	6	"ARRDC5,DPP9,FEM1A,PLIN3,TICAM1,UHRF1"
TCGA.AA.A010.01A	19	4891017	4960617	16	-0.8507	SMALL-LOSS	FOCAL	2	"ARRDC5,UHRF1"
TCGA.AG.4009.01A	19	5219913	5231284	5	-0.5487	SMALL-LOSS	FOCAL	1	PTPRS
TCGA.AG.3909.01A	19	5591712	5657210	26	-0.7469	SMALL-LOSS	FOCAL	2	"SAFB,SAFB2"
TCGA.AG.A01W.01A	19	5675750	5729436	21	-0.8975	SMALL-LOSS	FOCAL	5	"C19orf70,CATSPERD,HSD11B1L,LONP1,RPL36"
TCGA.AG.4009.01A	19	5679284	5719673	19	-0.5505	SMALL-LOSS	FOCAL	4	"C19orf70,HSD11B1L,LONP1,RPL36"
TCGA.AF.3914.01A	19	5691288	5711734	14	-1.0706	SMALL-LOSS	FOCAL	2	"LONP1,RPL36"
TCGA.AA.3509.01A	19	5724749	5754102	12	-1.1035	SMALL-LOSS	FOCAL	1	CATSPERD
TCGA.AZ.4684.01A	19	5724749	5754102	12	-1.1122	SMALL-LOSS	FOCAL	1	CATSPERD
TCGA.AA.A010.01A	19	5786449	5843775	12	-1.1449	SMALL-LOSS	FOCAL	4	"DUS3L,FUT3,FUT6,NRTN"
TCGA.AG.3909.01A	19	6361544	6387358	12	-0.5656	SMALL-LOSS	FOCAL	4	"ALKBH7,CLPP,GTF2F1,PSPN"
TCGA.AF.3914.01A	19	6361544	6471235	50	-0.9706	SMALL-LOSS	FOCAL	9	"ALKBH7,CLPP,CRB3,DENND1C,GTF2F1,KHSRP,PSPN,SLC25A23,SLC25A41"
TCGA.AA.A01Q.01A	19	6454292	6466898	8	-0.8027	SMALL-LOSS	FOCAL	2	"CRB3,SLC25A23"
TCGA.AG.3909.01A	19	6465492	6759555	77	-0.679	SMALL-LOSS	FOCAL	10	"C3,CD70,CRB3,DENND1C,GPR108,SH2D3A,TNFSF14,TNFSF9,TRIP10,TUBB4A"
TCGA.AA.A010.01A	19	6730259	6751018	21	-1.1501	SMALL-LOSS	FOCAL	2	"GPR108,TRIP10"
TCGA.AF.3914.01A	19	6730259	6763625	25	-0.7611	SMALL-LOSS	FOCAL	3	"GPR108,SH2D3A,TRIP10"
TCGA.CK.5914.01A	19	6739683	6749914	8	-0.7412	SMALL-LOSS	FOCAL	1	TRIP10
TCGA.AA.A01Q.01A	19	6739683	6751018	9	-0.8034	SMALL-LOSS	FOCAL	1	TRIP10
TCGA.AA.3858	19	6958133	6960369	3	-0.7402	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	19	7030556	7083321	11	-1.249	SMALL-LOSS	FOCAL	5	"MBD3L2,MBD3L3,MBD3L4,MBD3L5,ZNF557"
TCGA.AG.3909.01A	19	7075010	7083321	7	-0.9106	SMALL-LOSS	FOCAL	1	ZNF557
TCGA.EI.6513	19	7176973	7424527	39	-0.8097	SMALL-LOSS	FOCAL	1	INSR
TCGA.AA.A010.01A	19	7515993	7565657	17	-0.6983	SMALL-LOSS	FOCAL	3	"ARHGEF18,C19orf45,PEX11G"
TCGA.AF.3914.01A	19	7573104	7594425	11	-1.308	SMALL-LOSS	FOCAL	3	"C19orf45,MCOLN1,ZNF358"
TCGA.AA.A01Q.01A	19	7584497	7605485	16	-0.5408	SMALL-LOSS	FOCAL	3	"MCOLN1,PNPLA6,ZNF358"
TCGA.AA.A010.01A	19	7598357	7605485	6	-0.9789	SMALL-LOSS	FOCAL	2	"MCOLN1,PNPLA6"
TCGA.AA.A010.01A	19	7625483	7692999	26	-0.7548	SMALL-LOSS	FOCAL	3	"CAMSAP3,PNPLA6,XAB2"
TCGA.AG.A011.01A	19	7703570	7703869	2	-1.0593	SMALL-LOSS	FOCAL	1	STXBP2
TCGA.AA.A010.01A	19	7734161	7764536	15	-0.6461	SMALL-LOSS	FOCAL	4	"FCER2,MCEMP1,RETN,TRAPPC5"
TCGA.AA.A01Q.01A	19	7741915	7742953	3	-1.2397	SMALL-LOSS	FOCAL	1	MCEMP1
TCGA.AG.4009.01A	19	7741915	7743743	4	-0.5485	SMALL-LOSS	FOCAL	1	MCEMP1
TCGA.AG.3901	19	7785697	7800221	6	-1.2639	SMALL-LOSS	FOCAL	1	CLEC4G
TCGA.EI.6513	19	7825103	7831060	3	-0.9745	SMALL-LOSS	FOCAL	1	CLEC4M
TCGA.AA.A010.01A	19	7911381	8056496	41	-1.2665	SMALL-LOSS	FOCAL	9	"CTXN1,ELAVL1,EVI5L,LRRC8E,MAP2K7,PRR36,SNAPC2,TGFBR3L,TIMM44"
TCGA.AG.4009.01A	19	7913787	8056496	25	-0.5553	SMALL-LOSS	FOCAL	9	"CTXN1,ELAVL1,EVI5L,LRRC8E,MAP2K7,PRR36,SNAPC2,TGFBR3L,TIMM44"
TCGA.AF.3914.01A	19	7926716	8028367	21	-1.1941	SMALL-LOSS	FOCAL	9	"CTXN1,ELAVL1,EVI5L,LRRC8E,MAP2K7,PRR36,SNAPC2,TGFBR3L,TIMM44"
TCGA.AA.A01Q.01A	19	7960437	8056496	21	-0.575	SMALL-LOSS	FOCAL	7	"CTXN1,ELAVL1,LRRC8E,MAP2K7,SNAPC2,TGFBR3L,TIMM44"
TCGA.AA.3930.01A	19	7974885	7986873	6	-0.583	SMALL-LOSS	FOCAL	3	"MAP2K7,SNAPC2,TGFBR3L"
TCGA.AG.3909.01A	19	8402654	8468249	9	-0.6231	SMALL-LOSS	FOCAL	3	"ANGPTL4,KANK3,RAB11B"
TCGA.AG.3909.01A	19	8520252	8538469	9	-0.5282	SMALL-LOSS	FOCAL	1	HNRNPM
TCGA.AA.A010.01A	19	8520252	8555752	16	-0.7883	SMALL-LOSS	FOCAL	2	"HNRNPM,PRAM1"
TCGA.AG.3909.01A	19	8539023	8563055	9	-1.0927	SMALL-LOSS	FOCAL	2	"HNRNPM,PRAM1"
TCGA.AG.4009.01A	19	8645750	8669855	13	-0.5171	SMALL-LOSS	FOCAL	1	ADAMTS10
TCGA.AG.3909.01A	19	8650954	8669855	12	-0.8503	SMALL-LOSS	FOCAL	1	ADAMTS10
TCGA.AG.A01W.01A	19	8814335	8857295	22	-0.6172	SMALL-LOSS	FOCAL	1	OR2Z1
TCGA.AG.A01W.01A	19	8858051	8867602	17	-1.1629	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	19	8868429	8888170	31	-0.6239	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	19	8918084	8932134	11	-1.1041	SMALL-LOSS	FOCAL	1	ZNF558
TCGA.AG.A016.01A	19	8986978	9056136	69	-0.5384	SMALL-LOSS	FOCAL	1	MUC16
TCGA.AG.A01L.01A	19	9056136	9071731	8	-0.5268	SMALL-LOSS	FOCAL	1	MUC16
TCGA.AG.A015.01A	19	9056136	9073815	9	-0.8537	SMALL-LOSS	FOCAL	1	MUC16
TCGA.AG.A016.01A	19	9061692	9071731	7	-0.9312	SMALL-LOSS	FOCAL	1	MUC16
TCGA.AG.A01W.01A	19	9064911	9097657	7	-0.7968	SMALL-LOSS	FOCAL	1	MUC16
TCGA.AM.5820	19	9195597	9245167	14	-0.5495	SMALL-LOSS	FOCAL	4	"OR1M1,OR7G1,OR7G2,OR7G3"
TCGA.AG.A016.01A	19	9296426	9449817	11	-0.5236	SMALL-LOSS	FOCAL	6	"OR7D2,OR7D4,OR7E24,ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.AG.3909.01A	19	9406142	9452354	9	-1.2157	SMALL-LOSS	FOCAL	3	"ZNF559,ZNF559-ZNF177,ZNF699"
TCGA.AA.A00N.01A	19	9449145	9452354	4	-0.9339	SMALL-LOSS	FOCAL	2	"ZNF559,ZNF559-ZNF177"
TCGA.AA.3844	19	9485228	9490813	5	-1.0761	SMALL-LOSS	FOCAL	2	"ZNF177,ZNF559-ZNF177"
TCGA.AA.3982	19	9487591	9490813	4	-1.0203	SMALL-LOSS	FOCAL	2	"ZNF177,ZNF559-ZNF177"
TCGA.AA.A00N.01A	19	9577213	9678704	18	-0.8145	SMALL-LOSS	FOCAL	3	"ZNF121,ZNF426,ZNF560"
TCGA.AA.A010.01A	19	9763573	9771308	5	-0.6244	SMALL-LOSS	FOCAL	1	ZNF562
TCGA.AA.A00N.01A	19	9763573	9964855	21	-0.525	SMALL-LOSS	FOCAL	7	"FBXL12,OLFM2,PIN1,UBL5,ZNF562,ZNF812,ZNF846"
TCGA.AG.A01W.01A	19	9825825	9939502	14	-0.6067	SMALL-LOSS	FOCAL	3	"FBXL12,UBL5,ZNF846"
TCGA.AG.A01W.01A	19	9948192	10030192	35	-0.6164	SMALL-LOSS	FOCAL	2	"OLFM2,PIN1"
TCGA.AA.A010.01A	19	10197554	10226146	18	-1.0662	SMALL-LOSS	FOCAL	6	"ANGPTL6,C19orf66,EIF3G,P2RY11,PPAN,PPAN-P2RY11"
TCGA.AG.3909.01A	19	10197554	10230257	20	-0.7499	SMALL-LOSS	FOCAL	6	"ANGPTL6,C19orf66,EIF3G,P2RY11,PPAN,PPAN-P2RY11"
TCGA.AA.3509.01A	19	10270999	10292639	12	-0.9245	SMALL-LOSS	FOCAL	1	DNMT1
TCGA.AA.A01F.01A	19	10291089	10292639	3	-1.1222	SMALL-LOSS	FOCAL	1	DNMT1
TCGA.AG.3909.01A	19	10334868	10368879	5	-1.1575	SMALL-LOSS	FOCAL	2	"MRPL4,S1PR2"
TCGA.AG.3909.01A	19	10502195	10677767	39	-0.8726	SMALL-LOSS	FOCAL	7	"ATG4D,CDC37,CDKN2D,KEAP1,KRI1,PDE4A,S1PR5"
TCGA.AA.A010.01A	19	10505645	10568518	13	-0.8202	SMALL-LOSS	FOCAL	2	"CDC37,PDE4A"
TCGA.AA.A01Q.01A	19	10563873	10812136	61	-0.5581	SMALL-LOSS	FOCAL	10	"AP1M2,ATG4D,CDKN2D,ILF3,KEAP1,KRI1,PDE4A,QTRT1,S1PR5,SLC44A2"
TCGA.AG.4009.01A	19	10602241	10694553	26	-0.5446	SMALL-LOSS	FOCAL	6	"AP1M2,ATG4D,CDKN2D,KEAP1,KRI1,S1PR5"
TCGA.AF.3914.01A	19	10610103	10791715	46	-0.6673	SMALL-LOSS	FOCAL	8	"AP1M2,ATG4D,CDKN2D,ILF3,KEAP1,KRI1,S1PR5,SLC44A2"
TCGA.AA.A010.01A	19	10683666	10789233	27	-1.2155	SMALL-LOSS	FOCAL	3	"AP1M2,ILF3,SLC44A2"
TCGA.AA.3967.01A	19	10687823	10697785	8	-0.9039	SMALL-LOSS	FOCAL	1	AP1M2
TCGA.AG.3909.01A	19	10736876	10823190	31	-0.5199	SMALL-LOSS	FOCAL	3	"ILF3,QTRT1,SLC44A2"
TCGA.AG.A01W.01A	19	10820103	10834767	6	-1.0942	SMALL-LOSS	FOCAL	2	"DNM2,QTRT1"
TCGA.AG.3909.01A	19	10904344	10940755	14	-0.8485	SMALL-LOSS	FOCAL	1	DNM2
TCGA.AA.A01Q.01A	19	10904344	11027316	25	-0.5235	SMALL-LOSS	FOCAL	4	"C19orf38,CARM1,DNM2,TMED1"
TCGA.AG.A01W.01A	19	11083184	11138174	13	-0.808	SMALL-LOSS	FOCAL	1	SMARCA4
TCGA.AG.A01W.01A	19	11185910	11204842	11	-1.0233	SMALL-LOSS	FOCAL	1	LDLR
TCGA.AA.A00N.01A	19	11241896	11327543	27	-0.5653	SMALL-LOSS	FOCAL	4	"DOCK6,KANK2,LDLR,SPC24"
TCGA.AG.3909.01A	19	11258466	11319314	17	-0.6044	SMALL-LOSS	FOCAL	3	"DOCK6,KANK2,SPC24"
TCGA.AA.A010.01A	19	11305092	11327866	15	-0.7516	SMALL-LOSS	FOCAL	2	"DOCK6,KANK2"
TCGA.AA.A010.01A	19	11350759	11354183	5	-0.663	SMALL-LOSS	FOCAL	2	"C19orf80,DOCK6"
TCGA.DY.A1DF	19	11410067	11438021	8	-0.7634	SMALL-LOSS	FOCAL	2	"RAB3D,TSPAN16"
TCGA.AA.A01Q.01A	19	11547163	11598267	24	-0.7405	SMALL-LOSS	FOCAL	3	"ELAVL3,PRKCSH,ZNF653"
TCGA.AA.A01Q.01A	19	12768857	12799988	21	-0.6668	SMALL-LOSS	FOCAL	5	"DHPS,FBXW9,MAN2B1,WDR83,WDR83OS"
TCGA.AA.A01Q.01A	19	12841747	12874055	15	-0.5717	SMALL-LOSS	FOCAL	4	"ASNA1,BEST2,C19orf43,HOOK2"
TCGA.AG.4009.01A	19	12875599	12903375	10	-0.8577	SMALL-LOSS	FOCAL	2	"HOOK2,JUNB"
TCGA.AA.A010.01A	19	12882937	12969115	29	-1.0564	SMALL-LOSS	FOCAL	6	"HOOK2,JUNB,MAST1,PRDX2,RNASEH2A,RTBDN"
TCGA.AA.A01Q.01A	19	12902577	13044326	56	-0.5434	SMALL-LOSS	FOCAL	10	"DNASE2,FARSA,GCDH,JUNB,KLF1,MAST1,PRDX2,RNASEH2A,RTBDN,SYCE2"
TCGA.AA.A01Q.01A	19	13049901	13058655	6	-1.2304	SMALL-LOSS	FOCAL	2	"CALR,RAD23A"
TCGA.AA.A010.01A	19	13080448	13211427	12	-0.5191	SMALL-LOSS	FOCAL	3	"DAND5,LYL1,NFIX"
TCGA.AF.3914.01A	19	13201051	13339463	28	-0.7401	SMALL-LOSS	FOCAL	7	"CACNA1A,IER2,LYL1,NACC1,NFIX,STX10,TRMT1"
TCGA.AA.A010.01A	19	13246025	13345697	24	-0.7539	SMALL-LOSS	FOCAL	4	"CACNA1A,IER2,NACC1,STX10"
TCGA.AG.3909.01A	19	13246025	13346380	20	-0.6123	SMALL-LOSS	FOCAL	4	"CACNA1A,IER2,NACC1,STX10"
TCGA.AA.A010.01A	19	13411313	13427899	7	-1.0335	SMALL-LOSS	FOCAL	1	CACNA1A
TCGA.AA.A01Q.01A	19	13865053	13882884	11	-0.6732	SMALL-LOSS	FOCAL	2	"CCDC130,MRI1"
TCGA.AA.A010.01A	19	13910485	13936317	9	-0.7435	SMALL-LOSS	FOCAL	1	ZSWIM4
TCGA.AA.A01Q.01A	19	13919603	14023943	21	-0.6639	SMALL-LOSS	FOCAL	4	"C19orf57,CC2D1A,NANOS3,ZSWIM4"
TCGA.AA.A010.01A	19	14063839	14079340	12	-1.1944	SMALL-LOSS	FOCAL	3	"DCAF15,PODNL1,RFX1"
TCGA.AF.3914.01A	19	14065113	14213580	34	-0.8275	SMALL-LOSS	FOCAL	9	"C19orf67,DCAF15,IL27RA,LOC113230,PALM3,PRKACA,RFX1,RLN3,SAMD1"
TCGA.AA.A010.01A	19	14153213	14169883	9	-0.8421	SMALL-LOSS	FOCAL	2	"IL27RA,PALM3"
TCGA.AG.4009.01A	19	14153213	14232293	18	-0.5387	SMALL-LOSS	FOCAL	7	"ASF1B,C19orf67,IL27RA,LOC113230,PALM3,PRKACA,SAMD1"
TCGA.AA.A01Q.01A	19	14203887	14294293	31	-0.9703	SMALL-LOSS	FOCAL	3	"ADGRL1,ASF1B,PRKACA"
TCGA.AG.A00C.01A	19	14492246	14499486	2	-1.149	SMALL-LOSS	FOCAL	1	ADGRE5
TCGA.AA.A010.01A	19	14517468	14523316	8	-0.8111	SMALL-LOSS	FOCAL	2	"ADGRE5,DDX39A"
TCGA.AG.4009.01A	19	14574440	14628904	15	-0.6354	SMALL-LOSS	FOCAL	4	"DNAJB1,GIPC1,PKN1,PTGER1"
TCGA.AF.3914.01A	19	14580516	14628904	15	-0.7043	SMALL-LOSS	FOCAL	4	"DNAJB1,GIPC1,PKN1,PTGER1"
TCGA.DC.4749	19	14643498	14655864	4	-0.7227	SMALL-LOSS	FOCAL	1	TECR
TCGA.AA.A00N.01A	19	14804205	14809966	4	-0.5944	SMALL-LOSS	FOCAL	1	ZNF333
TCGA.AA.A010.01A	19	15072804	15082502	4	-1.307	SMALL-LOSS	FOCAL	1	SLC1A6
TCGA.AF.3914.01A	19	15219830	15224384	7	-0.7638	SMALL-LOSS	FOCAL	1	SYDE1
TCGA.AA.A010.01A	19	15235685	15292340	15	-0.5683	SMALL-LOSS	FOCAL	2	"ILVBL,NOTCH3"
TCGA.AG.3909.01A	19	15271446	15521267	61	-0.7429	SMALL-LOSS	FOCAL	5	"AKAP8,AKAP8L,BRD4,EPHX3,NOTCH3"
TCGA.AG.4009.01A	19	15289587	15341741	11	-0.8423	SMALL-LOSS	FOCAL	2	"EPHX3,NOTCH3"
TCGA.AA.3862.01A	19	15350156	15511041	33	-0.6186	SMALL-LOSS	FOCAL	3	"AKAP8,AKAP8L,BRD4"
TCGA.AA.A01Q.01A	19	15364916	15482982	19	-0.7604	SMALL-LOSS	FOCAL	2	"AKAP8,BRD4"
TCGA.AG.4009.01A	19	15465709	15487710	13	-1.0073	SMALL-LOSS	FOCAL	1	AKAP8
TCGA.AA.A010.01A	19	15465709	15529648	25	-0.9236	SMALL-LOSS	FOCAL	2	"AKAP8,AKAP8L"
TCGA.AA.A00N.01A	19	15469739	15521267	23	-1.2147	SMALL-LOSS	FOCAL	2	"AKAP8,AKAP8L"
TCGA.CK.5914.01A	19	15469739	15521267	23	-0.6915	SMALL-LOSS	FOCAL	2	"AKAP8,AKAP8L"
TCGA.AG.4009.01A	19	15533858	15590051	20	-0.7373	SMALL-LOSS	FOCAL	3	"PGLYRP2,RASAL3,WIZ"
TCGA.AA.A010.01A	19	15580391	15590051	4	-1.2329	SMALL-LOSS	FOCAL	1	PGLYRP2
TCGA.AG.3909.01A	19	15654739	15739956	15	-0.6362	SMALL-LOSS	FOCAL	2	"CYP4F22,CYP4F8"
TCGA.AA.3850	19	15859628	15863022	7	-0.91775	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	19	15989532	16242968	37	-0.6667	SMALL-LOSS	FOCAL	5	"CYP4F11,CYP4F2,OR10H4,RAB8A,TPM4"
TCGA.AG.3909.01A	19	15990117	16035530	16	-0.6327	SMALL-LOSS	FOCAL	2	"CYP4F11,CYP4F2"
TCGA.AG.3909.01A	19	16199805	16242968	11	-0.8103	SMALL-LOSS	FOCAL	2	"RAB8A,TPM4"
TCGA.AG.A01W.01A	19	16413914	16481259	13	-0.9747	SMALL-LOSS	FOCAL	2	"EPS15L1,KLF2"
TCGA.AA.A00N.01A	19	16589912	16771992	46	-0.7676	SMALL-LOSS	FOCAL	7	"C19orf44,CALR3,CHERP,MED26,SLC35E1,SMIM7,TMEM38A"
TCGA.AG.4009.01A	19	16638849	16764795	15	-0.5796	SMALL-LOSS	FOCAL	4	"CHERP,MED26,SLC35E1,SMIM7"
TCGA.AG.A01W.01A	19	17147410	17159707	6	-0.8938	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	19	17278701	17339565	38	-0.88	SMALL-LOSS	FOCAL	3	"MYO9B,OCEL1,USE1"
TCGA.A6.3808.01A	19	17278701	17424776	72	-0.9288	SMALL-LOSS	FOCAL	10	"ABHD8,ANKLE1,BABAM1,DDA1,MRPL34,MYO9B,NR2F6,OCEL1,USE1,USHBP1"
TCGA.AG.4009.01A	19	17312697	17360993	13	-0.5214	SMALL-LOSS	FOCAL	5	"MYO9B,NR2F6,OCEL1,USE1,USHBP1"
TCGA.AA.A010.01A	19	17320357	17346260	17	-1.1253	SMALL-LOSS	FOCAL	4	"MYO9B,NR2F6,OCEL1,USE1"
TCGA.AA.A01Q.01A	19	17338609	17444182	40	-0.7236	SMALL-LOSS	FOCAL	9	"ABHD8,ANKLE1,ANO8,BABAM1,DDA1,MRPL34,NR2F6,OCEL1,USHBP1"
TCGA.AA.A010.01A	19	17373354	17405127	16	-0.7482	SMALL-LOSS	FOCAL	4	"ABHD8,ANKLE1,BABAM1,USHBP1"
TCGA.AG.4009.01A	19	17403443	17444182	18	-0.6869	SMALL-LOSS	FOCAL	4	"ABHD8,ANO8,DDA1,MRPL34"
TCGA.AA.A02K.01A	19	17430307	17443711	9	-0.6334	SMALL-LOSS	FOCAL	2	"ANO8,DDA1"
TCGA.AG.A01W.01A	19	17624367	17659933	12	-0.9102	SMALL-LOSS	FOCAL	2	"FAM129C,PGLS"
TCGA.AA.A010.01A	19	17652897	17683245	11	-1.1937	SMALL-LOSS	FOCAL	2	"COLGALT1,FAM129C"
TCGA.AA.A01Q.01A	19	17660207	17671149	4	-1.0368	SMALL-LOSS	FOCAL	2	"COLGALT1,FAM129C"
TCGA.AG.4009.01A	19	17660207	17678188	5	-0.6559	SMALL-LOSS	FOCAL	2	"COLGALT1,FAM129C"
TCGA.F5.6812	19	17680100	17688813	3	-1.1058	SMALL-LOSS	FOCAL	1	COLGALT1
TCGA.AA.A010.01A	19	17830263	17873518	10	-1.2173	SMALL-LOSS	FOCAL	2	"FCHO1,MAP1S"
TCGA.AG.4009.01A	19	17831698	17865890	7	-0.9001	SMALL-LOSS	FOCAL	2	"FCHO1,MAP1S"
TCGA.AG.4009.01A	19	18085852	18123672	10	-0.746	SMALL-LOSS	FOCAL	2	"ARRDC2,KCNN1"
TCGA.AA.A010.01A	19	18235058	18266661	19	-1.2539	SMALL-LOSS	FOCAL	2	"MAST3,PIK3R2"
TCGA.AA.A01Q.01A	19	18271238	18331618	23	-0.7822	SMALL-LOSS	FOCAL	5	"IFI30,MPV17L2,PDE4C,PIK3R2,RAB3A"
TCGA.AA.A010.01A	19	18502767	18557535	18	-1.1664	SMALL-LOSS	FOCAL	4	"ELL,ISYNA1,LRRC25,SSBP4"
TCGA.AG.4009.01A	19	18538101	18547465	7	-0.6171	SMALL-LOSS	FOCAL	2	"ISYNA1,SSBP4"
TCGA.AA.A010.01A	19	18642926	18700172	16	-0.8723	SMALL-LOSS	FOCAL	4	"C19orf60,FKBP8,KXD1,UBA52"
TCGA.AA.A01Q.01A	19	18853702	18962912	29	-0.6351	SMALL-LOSS	FOCAL	3	"COMP,CRTC1,UPF1"
TCGA.AA.A01Q.01A	19	18963751	18976806	14	-1.2966	SMALL-LOSS	FOCAL	1	UPF1
TCGA.AA.A010.01A	19	19129871	19168176	10	-1.1644	SMALL-LOSS	FOCAL	2	"ARMC6,SUGP2"
TCGA.AG.A01W.01A	19	19163827	19174548	11	-1.1613	SMALL-LOSS	FOCAL	1	ARMC6
TCGA.AA.A00N.01A	19	19312417	19447935	48	-0.7054	SMALL-LOSS	FOCAL	7	"HAPLN4,MAU2,NCAN,NR2C2AP,RFXANK,SUGP1,TM6SF2"
TCGA.AA.A010.01A	19	19344548	19381781	19	-1.0253	SMALL-LOSS	FOCAL	3	"HAPLN4,NCAN,TM6SF2"
TCGA.AF.3914.01A	19	19638029	19770363	43	-1.0528	SMALL-LOSS	FOCAL	7	"ATP13A1,CILP2,GMIP,LPAR2,NDUFA13,PBX4,YJEFN3"
TCGA.AA.A00N.01A	19	19710075	19825131	41	-0.6921	SMALL-LOSS	FOCAL	6	"ATP13A1,GMIP,LPAR2,PBX4,ZNF101,ZNF14"
TCGA.AG.4009.01A	19	19735083	19770363	22	-0.7857	SMALL-LOSS	FOCAL	3	"ATP13A1,GMIP,LPAR2"
TCGA.AA.A010.01A	19	19735083	19825131	39	-0.9502	SMALL-LOSS	FOCAL	5	"ATP13A1,GMIP,LPAR2,ZNF101,ZNF14"
TCGA.EF.5830	19	19892795	19939386	3	-1.2549	SMALL-LOSS	FOCAL	1	ZNF506
TCGA.AM.5820	19	19939386	20009816	11	-1.0113	SMALL-LOSS	FOCAL	1	ZNF253
TCGA.DY.A1DF	19	19939386	20244866	66	-0.519	SMALL-LOSS	FOCAL	4	"ZNF253,ZNF682,ZNF90,ZNF93"
TCGA.AA.A010.01A	19	20216044	20736468	14	-0.7592	SMALL-LOSS	FOCAL	3	"ZNF486,ZNF737,ZNF90"
TCGA.AA.A00N.01A	19	20228538	20736468	13	-0.988	SMALL-LOSS	FOCAL	3	"ZNF486,ZNF737,ZNF90"
TCGA.A6.6782	19	20594675	20721233	10	-0.8417	SMALL-LOSS	FOCAL	1	ZNF737
TCGA.AA.3858	19	20611031	20700753	7	-1.0143	SMALL-LOSS	FOCAL	0	None
TCGA.DC.5337	19	20611031	20721233	8	-0.8513	SMALL-LOSS	FOCAL	1	ZNF737
TCGA.DM.A0XD	19	20633221	20721233	6	-1.143	SMALL-LOSS	FOCAL	1	ZNF737
TCGA.AA.3850	19	21053664	21091178	6	-0.93345	SMALL-LOSS	FOCAL	0	None
TCGA.AF.A56K	19	21157889	21165166	3	-0.9943	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	19	21605682	21719981	12	-0.8331	SMALL-LOSS	FOCAL	2	"ZNF429,ZNF493"
TCGA.AG.3909.01A	19	21688484	21948456	12	-0.9078	SMALL-LOSS	FOCAL	2	"ZNF100,ZNF429"
TCGA.AG.4009.01A	19	21909496	21927691	4	-1.1971	SMALL-LOSS	FOCAL	1	ZNF100
TCGA.AF.3914.01A	19	21909496	21948456	5	-1.2358	SMALL-LOSS	FOCAL	1	ZNF100
TCGA.AA.3862.01A	19	21948456	22379318	32	-0.5588	SMALL-LOSS	FOCAL	5	"ZNF100,ZNF208,ZNF257,ZNF43,ZNF676"
TCGA.4N.A93T	19	22615259	24037704	327	-0.8301	SMALL-LOSS	FOCAL	7	"ZNF492,ZNF675,ZNF681,ZNF728,ZNF730,ZNF91,ZNF99"
TCGA.4T.AA8H	19	22902361	22902709	3	-1.2095	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	19	23542295	23557390	9	-0.691	SMALL-LOSS	FOCAL	1	ZNF91
TCGA.AG.3909.01A	19	23542295	23938175	23	-0.6489	SMALL-LOSS	FOCAL	3	"ZNF675,ZNF681,ZNF91"
TCGA.AF.3914.01A	19	23543410	23578040	8	-1.005	SMALL-LOSS	FOCAL	1	ZNF91
TCGA.AM.5820	19	23780113	23942754	27	-0.5815	SMALL-LOSS	FOCAL	2	"ZNF675,ZNF681"
TCGA.AF.3914.01A	19	23835997	23836966	4	-0.5199	SMALL-LOSS	FOCAL	1	ZNF675
TCGA.CI.6624	19	23929254	23988708	24	-0.657	SMALL-LOSS	FOCAL	1	ZNF681
TCGA.CM.4746	19	23966551	24019240	22	-0.8528	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3872	19	27998565	28007032	3	-1.119	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3855	19	28704539	28720082	10	-1.0562	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	19	29698418	30314514	18	-0.6595	SMALL-LOSS	FOCAL	6	"C19orf12,CCNE1,PLEKHF1,POP4,UQCRFS1,VSTM2B"
TCGA.AG.4009.01A	19	30199122	30462021	9	-0.5552	SMALL-LOSS	FOCAL	3	"C19orf12,CCNE1,URI1"
TCGA.CM.6172	19	30635472	31134835	169	-0.8682	SMALL-LOSS	FOCAL	1	ZNF536
TCGA.AM.5820	19	31139520	32810228	558	-0.5849	SMALL-LOSS	FOCAL	2	"THEG5,TSHZ3"
TCGA.DY.A1DF	19	31391274	31554069	42	-0.6303	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DF	19	31936410	33268424	412	-0.6225	SMALL-LOSS	FOCAL	8	"ANKRD27,DPY19L3,NUDT19,PDCD5,RGS9BP,TDRD12,THEG5,ZNF507"
TCGA.AA.A00N.01A	19	32843699	32902107	9	-1.2797	SMALL-LOSS	FOCAL	2	"DPY19L3,ZNF507"
TCGA.CK.5914.01A	19	32972938	33202626	34	-0.787	SMALL-LOSS	FOCAL	5	"ANKRD27,DPY19L3,NUDT19,PDCD5,RGS9BP"
TCGA.AA.A02E.01A	19	32972938	33482677	69	-0.8171	SMALL-LOSS	FOCAL	10	"ANKRD27,C19orf40,CEP89,DPY19L3,NUDT19,PDCD5,RGS9BP,RHPN2,SLC7A9,TDRD12"
TCGA.AA.A00N.01A	19	33089009	33233640	32	-0.5874	SMALL-LOSS	FOCAL	4	"ANKRD27,NUDT19,RGS9BP,TDRD12"
TCGA.AG.4009.01A	19	33167200	33202626	3	-0.7173	SMALL-LOSS	FOCAL	2	"NUDT19,RGS9BP"
TCGA.AA.A00N.01A	19	33604621	34303653	62	-0.7431	SMALL-LOSS	FOCAL	9	"CEBPA,CEBPG,CHST8,GPATCH1,KCTD15,LRP3,PEPD,SLC7A10,WDR88"
TCGA.AA.A01Q.01A	19	33663204	33706628	17	-1.1939	SMALL-LOSS	FOCAL	3	"LRP3,SLC7A10,WDR88"
TCGA.AF.3914.01A	19	33687562	33706628	15	-1.0706	SMALL-LOSS	FOCAL	2	"LRP3,SLC7A10"
TCGA.AG.4009.01A	19	33687562	33878223	18	-0.6242	SMALL-LOSS	FOCAL	5	"CEBPA,CEBPG,LRP3,PEPD,SLC7A10"
TCGA.AD.6965	19	33860857	33983958	47	-0.6736	SMALL-LOSS	FOCAL	2	"CEBPG,PEPD"
TCGA.AA.3693	19	34600935	34653968	13	-0.7171	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6172	19	34704128	35093680	79	-0.6699	SMALL-LOSS	FOCAL	7	"GPI,KIAA0355,LSM14A,PDCD2L,SCGB2B2,UBA2,WTIP"
TCGA.AA.A010.01A	19	34839874	34872297	11	-0.7408	SMALL-LOSS	FOCAL	2	"GPI,KIAA0355"
TCGA.AG.3891.01A	19	34884084	34887188	3	-0.6409	SMALL-LOSS	FOCAL	1	GPI
TCGA.AG.3906.01A	19	34884568	34890398	5	-0.6185	SMALL-LOSS	FOCAL	1	GPI
TCGA.CK.5914.01A	19	34900039	34925726	8	-0.779	SMALL-LOSS	FOCAL	2	"PDCD2L,UBA2"
TCGA.AG.3909.01A	19	34900039	34935857	11	-1.0293	SMALL-LOSS	FOCAL	2	"PDCD2L,UBA2"
TCGA.AG.A01W.01A	19	35003398	35006355	4	-0.6837	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3693	19	35085309	35154446	19	-0.7549	SMALL-LOSS	FOCAL	1	SCGB2B2
TCGA.AA.A01Q.01A	19	35540156	35617124	13	-0.7191	SMALL-LOSS	FOCAL	3	"FXYD3,HPN,LGI4"
TCGA.AG.4009.01A	19	35752760	35786268	11	-0.81	SMALL-LOSS	FOCAL	4	"HAMP,LSR,MAG,USF2"
TCGA.AA.A01Q.01A	19	35753401	35842405	32	-0.5361	SMALL-LOSS	FOCAL	5	"CD22,HAMP,LSR,MAG,USF2"
TCGA.AF.3914.01A	19	35757225	35793319	12	-0.8745	SMALL-LOSS	FOCAL	4	"HAMP,LSR,MAG,USF2"
TCGA.AA.A00N.01A	19	36014347	36051679	30	-0.6616	SMALL-LOSS	FOCAL	4	"ATP4A,GAPDHS,SBSN,TMEM147"
TCGA.AG.3909.01A	19	36018959	36054084	28	-0.597	SMALL-LOSS	FOCAL	4	"ATP4A,GAPDHS,SBSN,TMEM147"
TCGA.AG.3909.01A	19	36120390	36159319	17	-0.5873	SMALL-LOSS	FOCAL	4	"COX6B1,ETV2,RBM42,UPK1A"
TCGA.AA.A01Q.01A	19	36125118	36149423	10	-0.5289	SMALL-LOSS	FOCAL	3	"COX6B1,ETV2,RBM42"
TCGA.AA.A010.01A	19	36166690	36168667	2	-1.0737	SMALL-LOSS	FOCAL	1	UPK1A
TCGA.A6.3808.01A	19	36168667	36237570	36	-0.6754	SMALL-LOSS	FOCAL	6	"IGFLR1,KMT2B,PSENEN,U2AF1L4,UPK1A,ZBTB32"
TCGA.AF.3914.01A	19	36205487	36213468	9	-1.0393	SMALL-LOSS	FOCAL	2	"KMT2B,ZBTB32"
TCGA.AG.4009.01A	19	36205487	36215841	9	-0.8201	SMALL-LOSS	FOCAL	2	"KMT2B,ZBTB32"
TCGA.AG.3909.01A	19	36237303	36279018	22	-0.962	SMALL-LOSS	FOCAL	5	"ARHGAP33,HSPB6,LIN37,PROSER3,PSENEN"
TCGA.AA.A010.01A	19	36340405	36369737	27	-1.1192	SMALL-LOSS	FOCAL	3	"APLP1,KIRREL2,NPHS1"
TCGA.AF.3914.01A	19	36349262	36368608	19	-1.0027	SMALL-LOSS	FOCAL	2	"APLP1,KIRREL2"
TCGA.G4.6299	19	36552080	36574797	8	-0.6623	SMALL-LOSS	FOCAL	1	WDR62
TCGA.AG.3909.01A	19	36594238	36642310	15	-0.7844	SMALL-LOSS	FOCAL	6	"CAPNS1,COX7A1,OVOL3,POLR2I,TBCB,WDR62"
TCGA.AA.A010.01A	19	36616303	36641820	8	-0.7193	SMALL-LOSS	FOCAL	2	"CAPNS1,TBCB"
TCGA.AG.4009.01A	19	36633122	36642310	7	-0.9219	SMALL-LOSS	FOCAL	2	"CAPNS1,COX7A1"
TCGA.AA.A010.01A	19	36692782	36832219	6	-1.0829	SMALL-LOSS	FOCAL	3	"ZFP14,ZNF146,ZNF565"
TCGA.AA.A010.01A	19	37100766	37117661	4	-0.9936	SMALL-LOSS	FOCAL	1	ZNF382
TCGA.AG.3909.01A	19	37852960	37880198	8	-0.7225	SMALL-LOSS	FOCAL	2	"HKR1,ZNF527"
TCGA.AG.3909.01A	19	38652851	38743483	16	-0.6672	SMALL-LOSS	FOCAL	3	"DPF1,PPP1R14A,SIPA1L3"
TCGA.AA.A010.01A	19	38692485	38712945	12	-1.2123	SMALL-LOSS	FOCAL	2	"DPF1,SIPA1L3"
TCGA.AF.3914.01A	19	38706778	38712945	5	-1.0918	SMALL-LOSS	FOCAL	1	DPF1
TCGA.AA.A01Q.01A	19	38845311	38876983	22	-0.7908	SMALL-LOSS	FOCAL	3	"CATSPERG,GGN,PSMD8"
TCGA.AF.3914.01A	19	38845311	38901474	35	-0.5511	SMALL-LOSS	FOCAL	6	"CATSPERG,FAM98C,GGN,PSMD8,RASGRP4,SPRED3"
TCGA.AA.A00N.01A	19	38845311	38903325	36	-0.8325	SMALL-LOSS	FOCAL	6	"CATSPERG,FAM98C,GGN,PSMD8,RASGRP4,SPRED3"
TCGA.AG.3909.01A	19	38847332	38884918	23	-0.8948	SMALL-LOSS	FOCAL	4	"CATSPERG,GGN,PSMD8,SPRED3"
TCGA.AA.A010.01A	19	38855500	38907640	30	-0.8109	SMALL-LOSS	FOCAL	6	"CATSPERG,FAM98C,GGN,PSMD8,RASGRP4,SPRED3"
TCGA.AG.3909.01A	19	38938968	38983080	25	-1.1838	SMALL-LOSS	FOCAL	1	RYR1
TCGA.AA.A00N.01A	19	38942357	39005608	42	-0.5311	SMALL-LOSS	FOCAL	1	RYR1
TCGA.A6.3808.01A	19	38976208	38997417	18	-0.5214	SMALL-LOSS	FOCAL	1	RYR1
TCGA.AG.A016.01A	19	38984960	38987449	3	-1.3122	SMALL-LOSS	FOCAL	1	RYR1
TCGA.AA.A010.01A	19	39033945	39038856	4	-1.0539	SMALL-LOSS	FOCAL	1	RYR1
TCGA.AA.A01Q.01A	19	39191193	39200841	7	-0.8789	SMALL-LOSS	FOCAL	1	ACTN4
TCGA.AA.A010.01A	19	39198696	39218892	13	-1.0924	SMALL-LOSS	FOCAL	1	ACTN4
TCGA.AA.A010.01A	19	39359723	39362220	5	-0.7713	SMALL-LOSS	FOCAL	1	RINL
TCGA.AA.A02E.01A	19	39395617	39521635	24	-0.7719	SMALL-LOSS	FOCAL	6	"CCER2,FBXO17,FBXO27,MRPS12,NFKBIB,SARS2"
TCGA.AF.3914.01A	19	39521635	39600629	9	-0.898	SMALL-LOSS	FOCAL	2	"FBXO27,PAPL"
TCGA.AA.A01Q.01A	19	39660143	39668278	7	-0.9821	SMALL-LOSS	FOCAL	1	PAK4
TCGA.AG.4009.01A	19	39805110	39826534	7	-0.7612	SMALL-LOSS	FOCAL	2	"GMFG,LRFN1"
TCGA.AG.3909.01A	19	39866243	39914525	30	-0.6506	SMALL-LOSS	FOCAL	5	"MED29,PAF1,PLEKHG2,SAMD4B,ZFP36"
TCGA.AA.A01Q.01A	19	39867070	39898402	19	-0.7749	SMALL-LOSS	FOCAL	4	"MED29,PAF1,SAMD4B,ZFP36"
TCGA.AA.A02E.01A	19	39881948	39884136	3	-0.5684	SMALL-LOSS	FOCAL	1	MED29
TCGA.AA.A01Q.01A	19	39959344	39998797	23	-0.7014	SMALL-LOSS	FOCAL	3	"DLL3,SUPT5H,TIMM50"
TCGA.AG.3909.01A	19	39964555	40029969	21	-0.8392	SMALL-LOSS	FOCAL	6	"DLL3,EID2,EID2B,SELV,SUPT5H,TIMM50"
TCGA.AG.4009.01A	19	39991186	40029969	9	-0.7271	SMALL-LOSS	FOCAL	4	"DLL3,EID2,EID2B,SELV"
TCGA.AG.A01W.01A	19	40146294	40205930	12	-0.6576	SMALL-LOSS	FOCAL	2	"LGALS14,LGALS16"
TCGA.AM.5820	19	40256327	40308083	20	-1.0804	SMALL-LOSS	FOCAL	1	LEUTX
TCGA.AA.A00N.01A	19	40316406	40322376	7	-0.6654	SMALL-LOSS	FOCAL	1	DYRK1B
TCGA.AG.3909.01A	19	40316406	40432916	41	-0.572	SMALL-LOSS	FOCAL	3	"DYRK1B,FBL,FCGBP"
TCGA.AA.A01Q.01A	19	40317290	40329638	10	-0.5676	SMALL-LOSS	FOCAL	2	"DYRK1B,FBL"
TCGA.AG.4009.01A	19	40317887	40325119	5	-1.1457	SMALL-LOSS	FOCAL	2	"DYRK1B,FBL"
TCGA.AA.A010.01A	19	40317887	40330819	10	-0.7253	SMALL-LOSS	FOCAL	2	"DYRK1B,FBL"
TCGA.AF.3914.01A	19	40367257	40383551	8	-0.5897	SMALL-LOSS	FOCAL	1	FCGBP
TCGA.DM.A28M.01A	19	40367257	40411607	19	-0.7066	SMALL-LOSS	FOCAL	1	FCGBP
TCGA.AY.A54L.01A	19	40380070	40386399	4	-0.7542	SMALL-LOSS	FOCAL	1	FCGBP
TCGA.AG.4009.01A	19	40391989	40408223	8	-0.533	SMALL-LOSS	FOCAL	1	FCGBP
TCGA.AG.A01W.01A	19	40681396	40721031	22	-0.8339	SMALL-LOSS	FOCAL	1	MAP3K10
TCGA.AA.A01Q.01A	19	40697898	40788398	27	-0.6593	SMALL-LOSS	FOCAL	4	"AKT2,CNTD2,MAP3K10,TTC9B"
TCGA.AF.3914.01A	19	40714958	40723047	6	-1.0548	SMALL-LOSS	FOCAL	2	"MAP3K10,TTC9B"
TCGA.AA.A010.01A	19	40732231	40747826	8	-0.8955	SMALL-LOSS	FOCAL	2	"AKT2,CNTD2"
TCGA.AG.4009.01A	19	41007791	41110954	36	-0.7303	SMALL-LOSS	FOCAL	3	"LTBP4,SHKBP1,SPTBN4"
TCGA.AF.3914.01A	19	41018533	41224139	76	-0.5553	SMALL-LOSS	FOCAL	6	"ADCK4,ITPKC,LTBP4,NUMBL,SHKBP1,SPTBN4"
TCGA.AG.3909.01A	19	41175765	41223070	16	-0.931	SMALL-LOSS	FOCAL	3	"ADCK4,ITPKC,NUMBL"
TCGA.AG.4009.01A	19	41198803	41223070	10	-0.6966	SMALL-LOSS	FOCAL	2	"ADCK4,ITPKC"
TCGA.AA.A010.01A	19	41198803	41243551	16	-1.2548	SMALL-LOSS	FOCAL	2	"ADCK4,ITPKC"
TCGA.AG.3909.01A	19	41269448	41313641	14	-0.8106	SMALL-LOSS	FOCAL	4	"EGLN2,MIA,RAB4B,SNRPA"
TCGA.AA.A00N.01A	19	41270885	41313641	14	-0.7197	SMALL-LOSS	FOCAL	4	"EGLN2,MIA,RAB4B,SNRPA"
TCGA.AA.A010.01A	19	41281410	41313641	13	-1.3149	SMALL-LOSS	FOCAL	3	"EGLN2,MIA,RAB4B"
TCGA.AA.A01Q.01A	19	41282847	41313641	12	-0.5685	SMALL-LOSS	FOCAL	3	"EGLN2,MIA,RAB4B"
TCGA.AA.A010.01A	19	41825428	41854153	8	-1.2349	SMALL-LOSS	FOCAL	2	"CCDC97,TGFB1"
TCGA.AA.A00N.01A	19	41837994	41903034	17	-0.6101	SMALL-LOSS	FOCAL	4	"B9D2,EXOSC5,TGFB1,TMEM91"
TCGA.NH.A8F7	19	41990324	42031591	9	-0.7402	SMALL-LOSS	FOCAL	0	None
TCGA.A6.4105	19	42059849	42062306	3	-1.2736	SMALL-LOSS	FOCAL	1	CEACAM21
TCGA.AA.A00N.01A	19	42260536	42270043	4	-0.6641	SMALL-LOSS	FOCAL	1	CEACAM6
TCGA.AF.3914.01A	19	42355602	42397258	17	-0.6508	SMALL-LOSS	FOCAL	4	"ARHGEF1,CD79A,DMRTC2,RPS19"
TCGA.AA.A01Q.01A	19	42479739	42498129	9	-0.7347	SMALL-LOSS	FOCAL	1	ATP1A3
TCGA.AA.A010.01A	19	42728549	42759052	11	-1.1487	SMALL-LOSS	FOCAL	3	"ERF,GSK3A,ZNF526"
TCGA.AG.4009.01A	19	42740717	42827718	25	-0.739	SMALL-LOSS	FOCAL	6	"CIC,ERF,GSK3A,PAFAH1B3,PRR19,TMEM145"
TCGA.AF.3914.01A	19	42754452	42830359	23	-0.9387	SMALL-LOSS	FOCAL	6	"CIC,ERF,MEGF8,PAFAH1B3,PRR19,TMEM145"
TCGA.AA.A01Q.01A	19	42790876	42828830	22	-0.9485	SMALL-LOSS	FOCAL	4	"CIC,PAFAH1B3,PRR19,TMEM145"
TCGA.AA.A010.01A	19	42806045	42824462	7	-0.9991	SMALL-LOSS	FOCAL	3	"PAFAH1B3,PRR19,TMEM145"
TCGA.AG.3591	19	43323313	43537377	31	-0.9294	SMALL-LOSS	FOCAL	4	"PSG1,PSG11,PSG6,PSG7"
TCGA.AG.A026	19	43323313	43537377	28	-0.7853	SMALL-LOSS	FOCAL	4	"PSG1,PSG11,PSG6,PSG7"
TCGA.AY.A54L.01A	19	43702231	43860093	14	-0.8647	SMALL-LOSS	FOCAL	3	"CD177,PSG4,PSG9"
TCGA.AG.A01W.01A	19	43922480	43999480	16	-0.669	SMALL-LOSS	FOCAL	3	"LYPD3,PHLDB3,TEX101"
TCGA.AA.A010.01A	19	44010931	44031198	7	-0.7737	SMALL-LOSS	FOCAL	1	ETHE1
TCGA.AF.3914.01A	19	44015541	44056129	10	-1.1693	SMALL-LOSS	FOCAL	3	"ETHE1,XRCC1,ZNF575"
TCGA.AG.A01W.01A	19	44081898	44104425	13	-0.8795	SMALL-LOSS	FOCAL	3	"IRGQ,PINLYP,ZNF576"
TCGA.AG.3909.01A	19	44096131	44129193	11	-0.7994	SMALL-LOSS	FOCAL	5	"CADM4,IRGQ,SRRM5,ZNF428,ZNF576"
TCGA.AA.A010.01A	19	44116233	44130884	8	-1.0931	SMALL-LOSS	FOCAL	3	"CADM4,SRRM5,ZNF428"
TCGA.AA.A010.01A	19	44237424	44276100	13	-0.5871	SMALL-LOSS	FOCAL	2	"KCNN4,SMG9"
TCGA.AG.4009.01A	19	44251602	44284846	9	-0.6367	SMALL-LOSS	FOCAL	2	"KCNN4,SMG9"
TCGA.AG.3909.01A	19	44271648	44284846	7	-1.2765	SMALL-LOSS	FOCAL	1	KCNN4
TCGA.AA.A00N.01A	19	44936345	45016008	13	-0.7762	SMALL-LOSS	FOCAL	3	"CEACAM20,ZNF180,ZNF229"
TCGA.AA.A01Q.01A	19	44980602	44988523	4	-0.5791	SMALL-LOSS	FOCAL	1	ZNF180
TCGA.AG.3909.01A	19	44980602	45001314	5	-1.091	SMALL-LOSS	FOCAL	1	ZNF180
TCGA.AA.A010.01A	19	45254446	45262635	7	-1.2072	SMALL-LOSS	FOCAL	1	BCL3
TCGA.AA.A010.01A	19	45375058	45422362	21	-1.0096	SMALL-LOSS	FOCAL	4	"APOC1,APOE,PVRL2,TOMM40"
TCGA.AG.4009.01A	19	45381443	45411017	12	-0.5719	SMALL-LOSS	FOCAL	3	"APOE,PVRL2,TOMM40"
TCGA.AA.A01Q.01A	19	45395614	45406235	6	-1.2274	SMALL-LOSS	FOCAL	1	TOMM40
TCGA.AG.4009.01A	19	45573225	45578921	6	-0.7506	SMALL-LOSS	FOCAL	2	"CLASRP,ZNF296"
TCGA.AG.3909.01A	19	45852649	45867217	13	-1.2377	SMALL-LOSS	FOCAL	2	"ERCC2,KLC3"
TCGA.AG.A01W.01A	19	45900311	45981469	30	-0.7793	SMALL-LOSS	FOCAL	4	"CD3EAP,ERCC1,FOSB,PPP1R13L"
TCGA.AA.A010.01A	19	45988910	46005233	14	-1.238	SMALL-LOSS	FOCAL	2	"PPM1N,RTN2"
TCGA.AG.4009.01A	19	45996370	46005233	6	-0.895	SMALL-LOSS	FOCAL	2	"PPM1N,RTN2"
TCGA.AG.4009.01A	19	46214975	46281713	9	-0.6618	SMALL-LOSS	FOCAL	3	"DMPK,FBXO46,SIX5"
TCGA.AG.4009.01A	19	46282468	46299169	7	-1.0166	SMALL-LOSS	FOCAL	3	"DMPK,DMWD,RSPH6A"
TCGA.AA.A010.01A	19	46376164	46417487	6	-0.7533	SMALL-LOSS	FOCAL	4	"FOXA3,IRF2BP1,MYPOP,NANOS2"
TCGA.AA.A010.01A	19	46498287	46544142	17	-0.5915	SMALL-LOSS	FOCAL	3	"CCDC61,IGFL4,PGLYRP1"
TCGA.AA.A00J.01A	19	47223822	47236249	11	-0.8021	SMALL-LOSS	FOCAL	1	STRN4
TCGA.AA.A01Q.01A	19	47223822	47241995	14	-0.7719	SMALL-LOSS	FOCAL	1	STRN4
TCGA.AG.4009.01A	19	47225200	47258681	14	-0.5506	SMALL-LOSS	FOCAL	2	"FKRP,STRN4"
TCGA.AF.3914.01A	19	47539170	47585409	15	-0.9609	SMALL-LOSS	FOCAL	3	"NPAS1,TMEM160,ZC3H4"
TCGA.AA.A010.01A	19	47885220	47944348	14	-1.0999	SMALL-LOSS	FOCAL	3	"DHX34,MEIS3,SLC8A2"
TCGA.AG.A015.01A	19	47909662	47951046	13	-0.5206	SMALL-LOSS	FOCAL	2	"MEIS3,SLC8A2"
TCGA.AA.A01Q.01A	19	47993983	48006639	7	-0.8679	SMALL-LOSS	FOCAL	1	NAPA
TCGA.AA.A010.01A	19	48052464	48204584	14	-0.9577	SMALL-LOSS	FOCAL	2	"GLTSCR1,ZNF541"
TCGA.CK.4952.01A	19	48063653	48449538	42	-1.1195	SMALL-LOSS	FOCAL	7	"CRX,EHD2,GLTSCR1,GLTSCR2,SEPW1,SULT2A1,TPRX1"
TCGA.AA.A01Q.01A	19	48250159	48283897	10	-0.7001	SMALL-LOSS	FOCAL	2	"GLTSCR2,SEPW1"
TCGA.AA.A010.01A	19	48657098	48724940	9	-0.6883	SMALL-LOSS	FOCAL	3	"C19orf68,CARD8,LIG1"
TCGA.AM.5820	19	48742066	48764880	20	-0.6544	SMALL-LOSS	FOCAL	1	CARD8
TCGA.AG.3909.01A	19	48785577	48836429	13	-0.5265	SMALL-LOSS	FOCAL	4	"CCDC114,EMP3,TMEM143,ZNF114"
TCGA.AA.A01Q.01A	19	48892758	48982327	31	-0.7211	SMALL-LOSS	FOCAL	5	"CYTH2,GRIN2D,GRWD1,KCNJ14,KDELR1"
TCGA.AG.4009.01A	19	48945399	48975535	10	-0.7207	SMALL-LOSS	FOCAL	4	"CYTH2,GRIN2D,GRWD1,KCNJ14"
TCGA.AG.3909.01A	19	48973581	48982327	8	-0.9903	SMALL-LOSS	FOCAL	1	CYTH2
TCGA.AG.3909.01A	19	49119953	49248855	41	-0.6082	SMALL-LOSS	FOCAL	9	"CA11,DBP,FUT2,IZUMO1,MAMSTR,NTN5,RASIP1,RPL18,SPHK2"
TCGA.AA.A00N.01A	19	49376452	49388653	7	-0.7603	SMALL-LOSS	FOCAL	2	"PPP1R15A,TULP2"
TCGA.AG.3909.01A	19	49376452	49388653	7	-0.8527	SMALL-LOSS	FOCAL	2	"PPP1R15A,TULP2"
TCGA.AG.3909.01A	19	49442657	49474145	14	-1.0113	SMALL-LOSS	FOCAL	4	"BAX,DHDH,FTL,GYS1"
TCGA.AA.A01Q.01A	19	49448043	49485930	18	-0.5741	SMALL-LOSS	FOCAL	4	"BAX,DHDH,FTL,GYS1"
TCGA.AG.3909.01A	19	49589622	49693892	51	-0.8043	SMALL-LOSS	FOCAL	6	"C19orf73,HRC,LIN7B,PPFIA3,SNRNP70,TRPM4"
TCGA.AA.A01Q.01A	19	49925688	49949568	12	-0.8499	SMALL-LOSS	FOCAL	4	"GFY,PIH1D1,PTH2,SLC17A7"
TCGA.AA.A010.01A	19	49933747	49964060	21	-1.2819	SMALL-LOSS	FOCAL	3	"ALDH16A1,PIH1D1,SLC17A7"
TCGA.AF.3914.01A	19	50040271	50170249	46	-0.7825	SMALL-LOSS	FOCAL	8	"BCL2L12,IRF3,NOSIP,PRR12,PRRG2,RCN3,RRAS,SCAF1"
TCGA.AG.A01W.01A	19	50109957	50143508	7	-1.0621	SMALL-LOSS	FOCAL	2	"PRR12,RRAS"
TCGA.AA.A010.01A	19	50123560	50143185	8	-1.0277	SMALL-LOSS	FOCAL	2	"PRR12,RRAS"
TCGA.AA.A01Q.01A	19	50143185	50167882	15	-1.2376	SMALL-LOSS	FOCAL	3	"IRF3,RRAS,SCAF1"
TCGA.AA.A02K.01A	19	50149777	50161415	10	-0.6311	SMALL-LOSS	FOCAL	1	SCAF1
TCGA.AA.A01Q.01A	19	50169054	50187155	11	-0.7365	SMALL-LOSS	FOCAL	3	"BCL2L12,IRF3,PRMT1"
TCGA.AA.A010.01A	19	50173466	50185388	8	-1.1165	SMALL-LOSS	FOCAL	2	"BCL2L12,PRMT1"
TCGA.AG.A016.01A	19	50213530	50216655	5	-0.5536	SMALL-LOSS	FOCAL	1	CPT1C
TCGA.AA.A010.01A	19	50322399	50340052	12	-0.6568	SMALL-LOSS	FOCAL	1	MED25
TCGA.AA.A01Q.01A	19	50357632	50374797	14	-0.8752	SMALL-LOSS	FOCAL	3	"AKT1S1,PNKP,PTOV1"
TCGA.AG.4009.01A	19	50357632	50387473	19	-0.8167	SMALL-LOSS	FOCAL	4	"AKT1S1,PNKP,PTOV1,TBC1D17"
TCGA.AA.A010.01A	19	50370269	50390681	15	-0.6151	SMALL-LOSS	FOCAL	3	"AKT1S1,PNKP,TBC1D17"
TCGA.CK.5914.01A	19	50547877	50665952	7	-0.6088	SMALL-LOSS	FOCAL	2	"IZUMO2,ZNF473"
TCGA.AA.A010.01A	19	50861798	50865197	6	-0.5378	SMALL-LOSS	FOCAL	1	NAPSA
TCGA.AG.3909.01A	19	50864159	50965130	49	-0.5781	SMALL-LOSS	FOCAL	5	"MYBPC2,NAPSA,NR1H2,POLD1,SPIB"
TCGA.AA.A01Q.01A	19	50902057	50921060	18	-0.9453	SMALL-LOSS	FOCAL	1	POLD1
TCGA.AA.A00N.01A	19	50938988	51219482	76	-0.6542	SMALL-LOSS	FOCAL	9	"ASPDH,C19orf81,EMC10,FAM71E1,JOSD2,LRRC4B,MYBPC2,SHANK1,SYT3"
TCGA.AF.3914.01A	19	51015376	51227120	39	-0.8038	SMALL-LOSS	FOCAL	6	"ASPDH,C19orf81,CLEC11A,LRRC4B,SHANK1,SYT3"
TCGA.AG.4009.01A	19	51015881	51226735	35	-0.6461	SMALL-LOSS	FOCAL	6	"ASPDH,C19orf81,CLEC11A,LRRC4B,SHANK1,SYT3"
TCGA.AA.A010.01A	19	51125902	51172027	10	-1.2742	SMALL-LOSS	FOCAL	3	"C19orf81,SHANK1,SYT3"
TCGA.AG.3909.01A	19	51322411	51330877	7	-1.0715	SMALL-LOSS	FOCAL	2	"KLK1,KLK15"
TCGA.D5.6537	19	51332480	51333237	3	-0.8872	SMALL-LOSS	FOCAL	1	KLK15
TCGA.AG.3909.01A	19	51525764	51582044	17	-0.8318	SMALL-LOSS	FOCAL	4	"KLK11,KLK12,KLK13,KLK14"
TCGA.AA.A010.01A	19	51559797	51633108	19	-0.8375	SMALL-LOSS	FOCAL	4	"CTU1,KLK13,KLK14,SIGLEC9"
TCGA.AA.A010.01A	19	51825260	51857367	21	-0.8191	SMALL-LOSS	FOCAL	3	"ETFB,IGLON5,VSIG10L"
TCGA.AA.A01Q.01A	19	51845145	51857367	6	-0.7939	SMALL-LOSS	FOCAL	2	"ETFB,VSIG10L"
TCGA.AA.A00N.01A	19	52084593	52130351	8	-0.6888	SMALL-LOSS	FOCAL	2	"SIGLEC5,ZNF175"
TCGA.AG.3909.01A	19	52195801	52222410	7	-0.9114	SMALL-LOSS	FOCAL	1	HAS1
TCGA.AG.4009.01A	19	52196452	52222410	6	-0.677	SMALL-LOSS	FOCAL	1	HAS1
TCGA.AA.A01Q.01A	19	52216628	52222410	5	-0.6447	SMALL-LOSS	FOCAL	1	HAS1
TCGA.AA.3693	19	52473822	52638833	42	-0.7771	SMALL-LOSS	FOCAL	6	"ZNF350,ZNF432,ZNF614,ZNF615,ZNF616,ZNF841"
TCGA.AA.A00N.01A	19	52772779	52824830	10	-1.2798	SMALL-LOSS	FOCAL	2	"ZNF480,ZNF766"
TCGA.AA.A00N.01A	19	52918350	53304034	29	-1.0654	SMALL-LOSS	FOCAL	9	"ZNF28,ZNF528,ZNF534,ZNF578,ZNF600,ZNF611,ZNF701,ZNF808,ZNF83"
TCGA.G4.6299	19	53043684	53163861	34	-0.5661	SMALL-LOSS	FOCAL	3	"ZNF701,ZNF808,ZNF83"
TCGA.AG.3909.01A	19	53432172	53589426	10	-0.7503	SMALL-LOSS	FOCAL	5	"ERVV-1,ERVV-2,ZNF160,ZNF816,ZNF816-ZNF321P"
TCGA.AG.3909.01A	19	53611678	53856238	30	-1.1338	SMALL-LOSS	FOCAL	8	"BIRC8,VN1R2,VN1R4,ZNF347,ZNF415,ZNF665,ZNF677,ZNF845"
TCGA.AA.3870	19	53721300	53722455	3	-1.1553	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	19	54072539	54139903	6	-0.8795	SMALL-LOSS	FOCAL	2	"DPRX,ZNF331"
TCGA.AA.3509.01A	19	54178910	54265541	42	-0.6866	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4684.01A	19	54182202	54265541	41	-0.9051	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	19	54244523	54297250	13	-0.8087	SMALL-LOSS	FOCAL	1	NLRP12
TCGA.AG.3909.01A	19	54376765	54406286	13	-0.7687	SMALL-LOSS	FOCAL	2	"MYADM,PRKCG"
TCGA.AA.A00N.01A	19	54376765	54417701	21	-0.9911	SMALL-LOSS	FOCAL	3	"CACNG7,MYADM,PRKCG"
TCGA.AA.A010.01A	19	54378170	54396229	10	-1.013	SMALL-LOSS	FOCAL	2	"MYADM,PRKCG"
TCGA.AA.A01Q.01A	19	54485287	54501433	3	-1.0772	SMALL-LOSS	FOCAL	2	"CACNG6,CACNG8"
TCGA.AA.A00N.01A	19	54618542	54667404	34	-0.8766	SMALL-LOSS	FOCAL	5	"CNOT3,LENG1,PRPF31,TFPT,TMC4"
TCGA.AA.A010.01A	19	54634691	54667404	24	-0.5558	SMALL-LOSS	FOCAL	4	"CNOT3,LENG1,PRPF31,TMC4"
TCGA.AG.4009.01A	19	54634691	54667404	23	-0.5222	SMALL-LOSS	FOCAL	4	"CNOT3,LENG1,PRPF31,TMC4"
TCGA.AA.3980.01A	19	54803019	54804505	4	-0.9596	SMALL-LOSS	FOCAL	1	LILRA3
TCGA.AG.3906.01A	19	54866836	54868451	4	-0.739	SMALL-LOSS	FOCAL	1	LAIR1
TCGA.AA.3930.01A	19	54866836	54872471	7	-0.6292	SMALL-LOSS	FOCAL	1	LAIR1
TCGA.AG.A01W.01A	19	54905352	54958116	16	-0.8035	SMALL-LOSS	FOCAL	1	TTYH1
TCGA.AA.A00N.01A	19	54926356	55009369	33	-0.6122	SMALL-LOSS	FOCAL	4	"CDC42EP5,LENG8,LENG9,TTYH1"
TCGA.AG.4009.01A	19	54962450	54973293	15	-0.5358	SMALL-LOSS	FOCAL	2	"LENG8,LENG9"
TCGA.AG.A01W.01A	19	55004179	55008014	5	-0.6574	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	19	55054520	55087295	6	-0.9075	SMALL-LOSS	FOCAL	1	LILRA2
TCGA.AA.3858	19	55225612	55227878	3	-1.284	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A00H.01A	19	55246668	55263897	7	-0.9971	SMALL-LOSS	FOCAL	2	"KIR2DL3,KIR3DL3"
TCGA.AZ.4684.01A	19	55246668	55297913	13	-0.8975	SMALL-LOSS	FOCAL	3	"KIR2DL1,KIR2DL3,KIR3DL3"
TCGA.AY.5543	19	55300068	55347962	9	-0.828	SMALL-LOSS	FOCAL	3	"KIR2DL4,KIR2DS4,KIR3DL1"
TCGA.AY.A54L.01A	19	55341625	55363421	6	-1.1134	SMALL-LOSS	FOCAL	3	"KIR2DS4,KIR3DL1,KIR3DL2"
TCGA.CK.5914.01A	19	55421320	55536536	30	-0.7619	SMALL-LOSS	FOCAL	4	"GP6,NCR1,NLRP2,NLRP7"
TCGA.AA.3980.01A	19	55592558	55607428	15	-0.6411	SMALL-LOSS	FOCAL	2	"EPS8L1,PPP1R12C"
TCGA.AA.A010.01A	19	55602812	55656821	19	-1.0549	SMALL-LOSS	FOCAL	2	"PPP1R12C,TNNT1"
TCGA.AA.A010.01A	19	55747991	55865739	45	-1.0212	SMALL-LOSS	FOCAL	6	"BRSK1,COX6B2,HSPBP1,PPP6R1,SUV420H2,TMEM150B"
TCGA.AA.A01Q.01A	19	55798334	55823242	14	-0.8413	SMALL-LOSS	FOCAL	1	BRSK1
TCGA.AA.A010.01A	19	56011806	56028594	5	-1.0464	SMALL-LOSS	FOCAL	1	SSC5D
TCGA.AA.A01Q.01A	19	56089265	56189872	25	-0.7609	SMALL-LOSS	FOCAL	10	"CCDC106,EPN1,FIZ1,U2AF2,ZNF524,ZNF579,ZNF580,ZNF581,ZNF784,ZNF865"
TCGA.AA.A010.01A	19	56153878	56189872	20	-0.9826	SMALL-LOSS	FOCAL	5	"CCDC106,EPN1,U2AF2,ZNF580,ZNF581"
TCGA.AG.3909.01A	19	56153878	56220230	24	-0.6971	SMALL-LOSS	FOCAL	6	"CCDC106,EPN1,NLRP9,U2AF2,ZNF580,ZNF581"
TCGA.AG.4009.01A	19	56170534	56189872	11	-0.5242	SMALL-LOSS	FOCAL	2	"EPN1,U2AF2"
TCGA.AG.A01W.01A	19	56190792	56207372	12	-0.8452	SMALL-LOSS	FOCAL	1	EPN1
TCGA.AG.A00C.01A	19	56226372	56228045	2	-0.8403	SMALL-LOSS	FOCAL	1	NLRP9
TCGA.AG.3898	19	56307582	56307846	5	-0.8306	SMALL-LOSS	FOCAL	1	NLRP11
TCGA.AG.A01W.01A	19	56434539	56523681	12	-0.5525	SMALL-LOSS	FOCAL	3	"NLRP13,NLRP5,NLRP8"
TCGA.AA.A010.01A	19	56561777	56735985	24	-0.8771	SMALL-LOSS	FOCAL	6	"GALP,NLRP5,ZNF444,ZNF787,ZSCAN5A,ZSCAN5B"
TCGA.AG.3909.01A	19	56614476	56669821	3	-0.572	SMALL-LOSS	FOCAL	2	"ZNF444,ZNF787"
TCGA.AG.3909.01A	19	56732895	56925664	12	-0.8871	SMALL-LOSS	FOCAL	3	"ZNF582,ZNF583,ZSCAN5A"
TCGA.AA.A00N.01A	19	56732895	56935563	14	-1.1134	SMALL-LOSS	FOCAL	3	"ZNF582,ZNF583,ZSCAN5A"
TCGA.AG.A01W.01A	19	56776406	56887607	16	-0.5512	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	19	56972018	57065801	14	-0.6227	SMALL-LOSS	FOCAL	3	"ZFP28,ZNF471,ZNF667"
TCGA.AG.3909.01A	19	57022856	57184139	20	-1.1152	SMALL-LOSS	FOCAL	6	"SMIM17,ZFP28,ZNF470,ZNF471,ZNF71,ZNF835"
TCGA.AA.3667	19	57112743	57118406	3	-1.0455	SMALL-LOSS	FOCAL	1	ZNF71
TCGA.AA.A010.01A	19	57665715	57705202	8	-1.2572	SMALL-LOSS	FOCAL	2	"DUXA,ZNF264"
TCGA.AG.3909.01A	19	57984621	58001435	7	-0.7624	SMALL-LOSS	FOCAL	2	"ZNF419,ZNF772"
TCGA.AG.3909.01A	19	58187476	58324625	21	-0.765	SMALL-LOSS	FOCAL	7	"ZNF154,ZNF551,ZNF552,ZNF586,ZNF671,ZNF776,ZSCAN4"
TCGA.AG.4009.01A	19	58846121	58928127	14	-0.7056	SMALL-LOSS	FOCAL	7	"A1BG,RNF225,RPS5,ZNF497,ZNF584,ZNF837,ZSCAN22"
TCGA.AA.A010.01A	19	58944692	58948403	2	-0.6316	SMALL-LOSS	FOCAL	1	ZNF132
TCGA.AG.4009.01A	19	59058696	59068016	6	-0.9002	SMALL-LOSS	FOCAL	3	"CHMP2A,TRIM28,UBE2M"
TCGA.AY.4070	19	59059728	59095125	7	-0.7228	SMALL-LOSS	FOCAL	4	"CHMP2A,MZF1,TRIM28,UBE2M"
TCGA.A6.3808.01A	19	59069589	59082320	6	-0.5707	SMALL-LOSS	FOCAL	2	"MZF1,UBE2M"
TCGA.AG.A01W.01A	19	59206981	59321669	31	-0.5302	SMALL-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	19	59326503	59418359	56	-0.5683	SMALL-LOSS	FOCAL	0	None
TCGA.CK.4952.01A	19	59491810	59496317	7	-1.2724	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	19	61380232	61587005	15	-0.6395	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	19	62434207	62447055	9	-0.5757	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	20	239676	398130	27	-0.8626	SMALL-LOSS	FOCAL	7	"C20orf96,DEFB132,NRSN2,RBCK1,SOX12,TRIB3,ZCCHC3"
TCGA.CK.5914.01A	20	239676	422494	39	-1.0828	SMALL-LOSS	FOCAL	8	"C20orf96,DEFB132,NRSN2,RBCK1,SOX12,TBC1D20,TRIB3,ZCCHC3"
TCGA.AG.3909.01A	20	256572	307121	12	-0.6607	SMALL-LOSS	FOCAL	3	"C20orf96,SOX12,ZCCHC3"
TCGA.AA.A010.01A	20	398130	466989	17	-1.1837	SMALL-LOSS	FOCAL	3	"CSNK2A1,RBCK1,TBC1D20"
TCGA.AA.A010.01A	20	468019	656065	16	-0.5301	SMALL-LOSS	FOCAL	4	"CSNK2A1,SCRT2,SRXN1,TCF15"
TCGA.AA.A01Q.01A	20	820158	870809	11	-0.6221	SMALL-LOSS	FOCAL	2	"ANGPT4,FAM110A"
TCGA.T9.A92H	20	946461	947053	3	-1.1047	SMALL-LOSS	FOCAL	1	RSPO4
TCGA.AA.A010.01A	20	1143713	1234886	21	-1.0239	SMALL-LOSS	FOCAL	4	"C20orf202,PSMF1,RAD21L1,TMEM74B"
TCGA.CK.4952.01A	20	1157046	1174813	11	-0.9845	SMALL-LOSS	FOCAL	1	TMEM74B
TCGA.AA.A01C.01A	20	1292981	1293944	2	-1.2813	SMALL-LOSS	FOCAL	1	SDCBP2
TCGA.AA.A00L.01A	20	1579459	1591956	3	-1.1229	SMALL-LOSS	FOCAL	1	SIRPB1
TCGA.AA.3837	20	1870754	1894976	9	-0.7554	SMALL-LOSS	FOCAL	1	SIRPA
TCGA.AG.A020	20	1925836	2359818	246	-0.9008	SMALL-LOSS	FOCAL	4	"LOC388780,PDYN,STK35,TGM3"
TCGA.G4.6314	20	1994349	1999854	3	-0.7098	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	20	2616514	2644044	18	-1.2537	SMALL-LOSS	FOCAL	3	"IDH3B,NOP56,TMC2"
TCGA.AA.A00N.01A	20	2633883	2640645	13	-1.1786	SMALL-LOSS	FOCAL	2	"IDH3B,NOP56"
TCGA.CK.5914.01A	20	2729158	2955773	35	-0.7407	SMALL-LOSS	FOCAL	7	"C20orf141,CPXM1,EBF4,PCED1A,PTPRA,TMEM239,VPS16"
TCGA.AG.3909.01A	20	2774808	2819203	12	-0.5626	SMALL-LOSS	FOCAL	4	"C20orf141,CPXM1,PCED1A,TMEM239"
TCGA.AG.4009.01A	20	2774808	2846811	24	-0.5905	SMALL-LOSS	FOCAL	6	"C20orf141,CPXM1,PCED1A,PTPRA,TMEM239,VPS16"
TCGA.AG.A01W.01A	20	2788320	2794812	8	-1.1957	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	2968624	3018641	16	-0.7861	SMALL-LOSS	FOCAL	1	PTPRA
TCGA.AA.A01Q.01A	20	2987941	3008354	10	-0.9373	SMALL-LOSS	FOCAL	1	PTPRA
TCGA.AG.4009.01A	20	2996467	3017753	11	-0.6213	SMALL-LOSS	FOCAL	1	PTPRA
TCGA.AA.A010.01A	20	3127370	3175398	9	-1.1668	SMALL-LOSS	FOCAL	4	"DDRGK1,FASTKD5,LZTS3,UBOX5"
TCGA.AG.A01W.01A	20	3181172	3244311	19	-0.7069	SMALL-LOSS	FOCAL	4	"C20orf194,DDRGK1,ITPA,SLC4A11"
TCGA.AA.A01Q.01A	20	3193746	3218152	15	-0.6904	SMALL-LOSS	FOCAL	2	"ITPA,SLC4A11"
TCGA.AG.4009.01A	20	3203992	3218152	10	-0.6329	SMALL-LOSS	FOCAL	2	"ITPA,SLC4A11"
TCGA.AF.3914.01A	20	3208381	3234322	11	-0.638	SMALL-LOSS	FOCAL	2	"C20orf194,SLC4A11"
TCGA.AG.A01W.01A	20	3269111	3311018	9	-0.7131	SMALL-LOSS	FOCAL	1	C20orf194
TCGA.CK.5914.01A	20	3340100	3545980	16	-0.6411	SMALL-LOSS	FOCAL	2	"ATRN,C20orf194"
TCGA.AA.A010.01A	20	3355624	3363022	4	-0.8557	SMALL-LOSS	FOCAL	1	C20orf194
TCGA.AG.4009.01A	20	3624752	3657673	11	-0.7116	SMALL-LOSS	FOCAL	3	"ADAM33,ATRN,GFRA4"
TCGA.AF.3914.01A	20	3643927	3657673	9	-1.1945	SMALL-LOSS	FOCAL	2	"ADAM33,GFRA4"
TCGA.EI.6506	20	3691583	3698495	3	-0.6977	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	20	3719242	3739166	15	-1.1161	SMALL-LOSS	FOCAL	2	"C20orf27,HSPA12B"
TCGA.AF.3914.01A	20	3719242	3778985	24	-0.7213	SMALL-LOSS	FOCAL	5	"C20orf27,CDC25B,CENPB,HSPA12B,SPEF1"
TCGA.AG.A01W.01A	20	3728880	3752467	8	-0.593	SMALL-LOSS	FOCAL	2	"C20orf27,HSPA12B"
TCGA.AA.A02K.01A	20	3730333	3732013	3	-1.1905	SMALL-LOSS	FOCAL	1	HSPA12B
TCGA.AG.A01W.01A	20	3783225	3836576	10	-1.1812	SMALL-LOSS	FOCAL	3	"AP5S1,CDC25B,MAVS"
TCGA.A6.2683	20	3832259	3844294	6	-0.8592	SMALL-LOSS	FOCAL	1	MAVS
TCGA.DM.A1HA	20	3889123	4830411	500	-0.9225	SMALL-LOSS	FOCAL	7	"ADRA1D,PANK2,PRND,PRNP,RASSF2,RNF24,SMOX"
TCGA.A6.6653	20	3981558	4169078	92	-0.526	SMALL-LOSS	FOCAL	2	"RNF24,SMOX"
TCGA.AA.3989	20	4535942	4540104	3	-1.1542	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	20	5086792	5099262	5	-0.7341	SMALL-LOSS	FOCAL	2	"PCNA,TMEM230"
TCGA.AA.A010.01A	20	5095867	5099262	3	-0.8013	SMALL-LOSS	FOCAL	1	PCNA
TCGA.DM.A1HA	20	5125279	6137443	423	-0.9518	SMALL-LOSS	FOCAL	10	"C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,PROKR2,TRMT6"
TCGA.AA.3530	20	5379485	5380636	5	-0.565	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	20	5550753	6031403	56	-1.0563	SMALL-LOSS	FOCAL	7	"C20orf196,CHGB,CRLS1,GPCPD1,LRRN4,MCM8,TRMT6"
TCGA.AG.3909.01A	20	5974890	6031403	11	-1.0027	SMALL-LOSS	FOCAL	3	"CRLS1,LRRN4,MCM8"
TCGA.AY.A69D	20	6411559	6421210	3	-0.5357	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1HA	20	6442960	8400101	856	-0.8701	SMALL-LOSS	FOCAL	4	"BMP2,HAO1,PLCB1,TMX4"
TCGA.AA.3844	20	6500020	6557906	12	-0.5795	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	20	6603819	6612355	5	-0.8233	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	20	6938636	8238288	547	-0.70865	SMALL-LOSS	FOCAL	3	"HAO1,PLCB1,TMX4"
TCGA.AA.3846	20	7305774	7306964	3	-0.5619	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00D.01A	20	7864174	7962937	8	-0.5682	SMALL-LOSS	FOCAL	2	"HAO1,TMX4"
TCGA.D5.5541	20	7875762	8130136	101	-0.7369	SMALL-LOSS	FOCAL	3	"HAO1,PLCB1,TMX4"
TCGA.AG.3909.01A	20	8626700	8629962	3	-0.7545	SMALL-LOSS	FOCAL	1	PLCB1
TCGA.CK.5914.01A	20	8626700	8665529	7	-1.1917	SMALL-LOSS	FOCAL	1	PLCB1
TCGA.AA.3844	20	9212185	9259809	17	-0.5149	SMALL-LOSS	FOCAL	1	PLCB4
TCGA.AA.A00N.01A	20	9351805	9376117	10	-1.3035	SMALL-LOSS	FOCAL	1	PLCB4
TCGA.AA.3941	20	9689301	9692733	5	-0.8792	SMALL-LOSS	FOCAL	1	PAK7
TCGA.AA.A010.01A	20	10023743	10036100	8	-1.3021	SMALL-LOSS	FOCAL	1	ANKEF1
TCGA.AG.A01W.01A	20	10572953	10601323	17	-0.7216	SMALL-LOSS	FOCAL	1	SLX4IP
TCGA.AA.A010.01A	20	10628569	11903253	22	-0.8645	SMALL-LOSS	FOCAL	2	"BTBD3,JAG1"
TCGA.AD.A5EK	20	10641574	10786911	73	-1.0642	SMALL-LOSS	FOCAL	1	JAG1
TCGA.AA.3941	20	11024524	11052889	11	-1.0908	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3846	20	11381827	11383326	3	-0.7146	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6923	20	11406960	12815212	591	-0.5429	SMALL-LOSS	FOCAL	1	BTBD3
TCGA.AA.3872	20	11467522	11479952	8	-0.6362	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	20	11469091	11481276	7	-0.5642	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3727	20	12335399	14771471	872	-0.7994	SMALL-LOSS	FOCAL	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3872	20	12650311	12651633	5	-0.8944	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	20	12721535	12725100	9	-0.607	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6923	20	12826072	14894919	654	-0.5576	SMALL-LOSS	FOCAL	8	"ESF1,FLRT3,ISM1,MACROD2,NDUFAF5,SEL1L2,SPTLC3,TASP1"
TCGA.AA.3941	20	13015683	13019205	5	-0.8279	SMALL-LOSS	FOCAL	1	SPTLC3
TCGA.D5.7000	20	13034704	13034810	3	-0.951	SMALL-LOSS	FOCAL	1	SPTLC3
TCGA.AG.A01W.01A	20	13711114	13737473	9	-0.9394	SMALL-LOSS	FOCAL	1	ESF1
TCGA.AA.A00N.01A	20	13740297	13763103	8	-1.1396	SMALL-LOSS	FOCAL	1	ESF1
TCGA.AG.3909.01A	20	13740297	13773739	12	-0.7857	SMALL-LOSS	FOCAL	2	"ESF1,NDUFAF5"
TCGA.CK.5914.01A	20	13740297	13779025	14	-1.3204	SMALL-LOSS	FOCAL	2	"ESF1,NDUFAF5"
TCGA.AA.3982	20	14191559	14191826	3	-0.8326	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3510	20	14244970	14353385	34	-0.8308	SMALL-LOSS	FOCAL	2	"FLRT3,MACROD2"
TCGA.AA.3811	20	14318618	15246471	347	-0.5578	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3982	20	14352640	14353385	4	-0.8221	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.T9.A92H	20	14463593	14887229	150	-0.7135	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.D5.6532	20	14495110	14595692	41	-0.6046	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3848	20	14495110	14667414	67	-0.5343	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AF.A56K	20	14556194	14575694	11	-1.1641	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AF.3913	20	14556194	14728971	62	-0.529	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3529	20	14562026	14718195	59	-0.5205	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DC.6682	20	14575603	15382354	315	-1.3034	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AF.A56K	20	14579604	14686508	41	-0.777	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3982	20	14583256	15211512	247	-0.5155	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.5M.AAT4	20	14596778	15118947	203	-1.0141	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AZ.6606	20	14609956	15181589	234	-1.1173	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3898	20	14613018	14667414	21	-0.6582	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.4105	20	14613018	14811020	62	-1.012	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3510	20	14622994	14633077	4	-0.9748	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3941	20	14622994	14661105	15	-0.5839	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.D5.5538	20	14622994	14728971	36	-1.0084	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.6780	20	14627661	14817184	60	-0.6843	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.6653	20	14644858	14662881	8	-0.7551	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3885	20	14658869	15111137	180	-1.1393	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3543	20	14658869	15493764	360	-0.9871	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3883	20	14662881	15237210	238	-0.9139	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AH.6549.01A	20	14665450	15210536	2	-0.9017	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.A02K.01A	20	14665451	16030421	14	-0.5336	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.F4.6459	20	14668242	14849852	53	-0.9976	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3726	20	14686296	14837964	45	-0.6637	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3845	20	14686296	15037614	117	-0.5979	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A28F	20	14686508	15014096	104	-0.6967	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AF.A56K	20	14687768	14758472	18	-1.3054	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.CM.5344	20	14687768	14865155	54	-0.7574	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.F4.6808	20	14695378	15137116	180	-0.8017	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.A02Y	20	14720537	15009053	94	-0.7129	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3821	20	14720537	15239468	223	-0.9605	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3860	20	14728971	14899803	58	-0.6839	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A28A	20	14729868	14771471	13	-1.0674	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3592	20	14729868	14786005	18	-0.9453	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3812	20	14729868	15216864	201	-0.6178	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3864	20	14729868	15237871	219	-0.6778	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.EI.6513	20	14734359	15086861	143	-0.8155	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.EI.6917	20	14745197	14831624	27	-0.5325	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.A03J	20	14745197	15080339	130	-1.0681	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.CM.5860	20	14746325	15369396	253	-0.9899	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.4008	20	14758110	15052513	112	-0.6897	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AZ.6605	20	14762970	14906525	51	-0.7671	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AY.A69D	20	14771471	14823471	16	-0.7512	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3971	20	14784594	14906525	46	-0.851	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.A56B	20	14784594	15234768	198	-0.6982	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.2678	20	14798516	14965822	63	-0.6739	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AD.6964	20	14807598	15081315	115	-0.9291	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.G4.6294	20	14811020	14837327	9	-0.8683	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.F4.6569	20	14811020	15043435	86	-0.7797	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AF.5654	20	14816381	14965822	60	-0.6136	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.EF.5830	20	14817184	14923389	50	-0.7812	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3984	20	14830595	15181589	167	-0.7328	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3727	20	14830595	15216864	173	-0.7672	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3728	20	14830595	15222774	179	-1.2783	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AY.A8YK	20	14831624	14914708	39	-0.7064	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.G4.6306	20	14837327	14922359	44	-0.9627	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.EI.6917	20	14837327	15020630	68	-0.9906	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A28C	20	14844048	14897589	22	-0.7903	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3977	20	14844048	15211512	166	-1.1287	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DC.4745	20	14848658	14878295	15	-0.8644	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3664	20	14850724	15144762	144	-0.9289	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.D5.6532	20	14862803	15037897	66	-1.0691	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.CM.5344	20	14868352	14948624	37	-1.3183	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A1D8	20	14869902	14904123	15	-0.6062	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.G4.6294	20	14876099	14986154	41	-0.7291	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3592	20	14883126	14902521	10	-1.0383	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3956	20	14883126	14921538	25	-0.7689	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.D5.6535	20	14883126	14921538	25	-0.9204	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.6648	20	14887229	14923389	26	-1.2024	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.CM.4752	20	14891786	15037033	52	-0.72	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3510	20	14891786	15197889	147	-0.9104	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DC.6683	20	14899760	15234768	159	-0.8863	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.G4.6303	20	14904123	14986154	28	-0.9031	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.2681	20	14907596	14911682	5	-0.8294	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3896	20	14908034	14921233	9	-1.0352	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.NH.A8F8	20	14914708	15317977	174	-1.0686	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3966	20	14940686	14965822	8	-0.8953	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3994	20	14940686	14973776	9	-0.8588	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A1D8	20	14940686	15015185	20	-0.64	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3592	20	14940686	15237871	144	-0.9605	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.CK.6746	20	14941454	15161669	112	-0.8158	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.6780	20	14941454	15197889	121	-0.6485	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.EI.6883	20	14941454	16804228	1074	-0.6623	SMALL-LOSS	FOCAL	4	"KIF16B,MACROD2,OTOR,SNRPB2"
TCGA.DC.4745	20	14948624	15015440	17	-1.2427	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.F4.6856	20	14948624	15095267	66	-0.8562	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.4105	20	14948624	15337954	165	-0.8847	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.CM.5344	20	14948964	15014684	14	-0.6991	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AY.A8YK	20	14965822	15122604	86	-0.8447	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AZ.6600	20	14973776	15070048	46	-0.8176	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3966	20	14973776	15086441	60	-0.6201	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3866	20	14986154	15174440	107	-0.9341	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.F5.6864	20	14995342	15078342	47	-0.6594	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3860	20	15007063	15222774	120	-0.6916	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A1DB	20	15007353	15062812	34	-1.018	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.D5.6535	20	15020017	15085295	44	-0.9434	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.EI.6917	20	15025830	15143793	80	-0.6295	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.T9.A92H	20	15037033	15066459	28	-0.751	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AZ.4308	20	15044092	15435755	191	-0.6714	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.A022	20	15044366	15193073	84	-0.697	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3994	20	15045214	15274881	108	-0.7282	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.2683	20	15057509	15215963	80	-0.5559	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A1DB	20	15063213	15154705	61	-0.5529	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.3807	20	15063213	15381647	137	-1.1927	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AD.6888	20	15063913	15085295	17	-0.8163	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.D5.5540	20	15063913	15161164	64	-1.1968	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.F4.6569	20	15070048	15099244	19	-0.6617	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3956	20	15070698	15211512	68	-0.7593	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3726	20	15078342	15111137	24	-0.6758	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3941	20	15080339	15085364	7	-1.1643	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3845	20	15086276	15144762	39	-0.5723	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.2678	20	15118947	15216194	42	-0.6807	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.CM.4752	20	15120743	15180180	30	-0.8598	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3529	20	15135937	15144762	10	-0.7786	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A28A	20	15135937	15317977	70	-0.7555	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.6653	20	15139047	15216194	26	-0.9081	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AF.3913	20	15144762	15237871	39	-0.813	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3660	20	15150729	15566579	211	-0.5786	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AG.3726	20	15159549	15220000	20	-0.7964	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AD.6965	20	15160751	17320569	1201	-0.6387	SMALL-LOSS	FOCAL	5	"KIF16B,MACROD2,OTOR,PCSK2,SNRPB2"
TCGA.F5.6864	20	15197889	17749817	1399	-0.5164	SMALL-LOSS	FOCAL	9	"BANF2,BFSP1,DSTN,KIF16B,MACROD2,OTOR,PCSK2,RRBP1,SNRPB2"
TCGA.A6.2675	20	15237051	15237871	3	-0.9751	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3848	20	15239468	15409213	69	-0.604	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DM.A1DB	20	15246471	15402079	59	-0.5518	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.DC.6682	20	15386827	15436001	38	-0.6007	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.A6.6648	20	15431799	15942875	319	-0.6795	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3982	20	15551798	15555640	6	-0.5473	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AZ.4308	20	15609235	15846680	140	-0.7428	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3982	20	15724398	15729407	4	-0.9429	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3982	20	15769703	15773570	6	-0.8089	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3941	20	15968879	15974472	11	-0.5531	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3941	20	16009794	16023085	9	-0.7284	SMALL-LOSS	FOCAL	1	MACROD2
TCGA.AA.3715	20	16141931	16144344	3	-1.3154	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	20	16307433	16310275	4	-1.1879	SMALL-LOSS	FOCAL	1	KIF16B
TCGA.AA.3982	20	17249449	17252992	6	-0.6219	SMALL-LOSS	FOCAL	1	PCSK2
TCGA.AA.3941	20	17249449	17254293	7	-1.1768	SMALL-LOSS	FOCAL	1	PCSK2
TCGA.AA.3844	20	17372876	17380885	6	-0.6333	SMALL-LOSS	FOCAL	1	PCSK2
TCGA.AA.A00N.01A	20	17495327	17594746	8	-0.939	SMALL-LOSS	FOCAL	3	"BFSP1,DSTN,RRBP1"
TCGA.AG.3727	20	17746154	17749817	3	-1.3196	SMALL-LOSS	FOCAL	0	None
TCGA.EF.5830	20	17773869	17782243	16	-0.594	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	20	17922925	18167893	29	-0.6272	SMALL-LOSS	FOCAL	5	"CSRP2BP,MGME1,OVOL2,PET117,SNX5"
TCGA.AA.3660	20	18015757	18346192	103	-0.8564	SMALL-LOSS	FOCAL	4	"CSRP2BP,OVOL2,PET117,ZNF133"
TCGA.AG.A01W.01A	20	18388751	18425667	16	-0.7201	SMALL-LOSS	FOCAL	1	DZANK1
TCGA.AG.A01W.01A	20	18439443	18444240	3	-1.1843	SMALL-LOSS	FOCAL	1	DZANK1
TCGA.AA.A00N.01A	20	19634652	19673871	7	-0.8709	SMALL-LOSS	FOCAL	1	SLC24A3
TCGA.AA.A00N.01A	20	19941317	20021274	20	-0.8058	SMALL-LOSS	FOCAL	3	"CRNKL1,NAA20,RIN2"
TCGA.NH.A6GA	20	20061756	20397253	144	-0.6899	SMALL-LOSS	FOCAL	3	"CFAP61,INSM1,RALGAPA2"
TCGA.AA.3941	20	20114258	20114706	3	-0.6336	SMALL-LOSS	FOCAL	1	CFAP61
TCGA.AA.3982	20	20899017	20900194	5	-0.7988	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	20	21157603	21267604	12	-0.6069	SMALL-LOSS	FOCAL	1	KIZ
TCGA.AF.3914.01A	20	21492514	23028365	11	-1.0029	SMALL-LOSS	FOCAL	5	"FOXA2,NKX2-2,PAX1,SSTR4,THBD"
TCGA.DM.A1HA	20	22145871	22620039	201	-0.9223	SMALL-LOSS	FOCAL	1	FOXA2
TCGA.CK.5914.01A	20	22562451	23349352	12	-1.1971	SMALL-LOSS	FOCAL	6	"CD93,FOXA2,GZF1,NXT1,SSTR4,THBD"
TCGA.AA.3844	20	23197218	23197402	3	-0.8252	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	20	23197218	23197612	4	-1.1478	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	20	23334651	23383582	15	-1.2391	SMALL-LOSS	FOCAL	3	"GZF1,NAPB,NXT1"
TCGA.DM.A1DA	20	23568750	23569160	3	-1.2837	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	20	23576753	23576963	4	-1.094	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	20	23614498	23615840	2	-1.275	SMALL-LOSS	FOCAL	1	CST3
TCGA.AA.A01Q.01A	20	24950130	25295496	66	-0.5462	SMALL-LOSS	FOCAL	6	"ABHD12,ACSS1,APMAP,ENTPD6,PYGB,VSX1"
TCGA.AA.A010.01A	20	25027394	25056847	6	-0.9594	SMALL-LOSS	FOCAL	2	"ACSS1,VSX1"
TCGA.AG.3909.01A	20	25056847	25295496	46	-0.6484	SMALL-LOSS	FOCAL	4	"ABHD12,ENTPD6,PYGB,VSX1"
TCGA.AA.3862.01A	20	25060012	25268994	31	-0.7156	SMALL-LOSS	FOCAL	3	"ENTPD6,PYGB,VSX1"
TCGA.DM.A28A	20	25705105	29586146	54	-0.5834	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	25829245	29847236	12	-0.6868	SMALL-LOSS	FOCAL	1	DEFB115
TCGA.CA.6716	20	26228268	26266312	5	-1.2277	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	29992668	30070041	9	-1.0045	SMALL-LOSS	FOCAL	4	"DEFB121,DEFB123,DEFB124,REM1"
TCGA.AA.A00N.01A	20	30028434	30070041	7	-0.8201	SMALL-LOSS	FOCAL	3	"DEFB123,DEFB124,REM1"
TCGA.AA.A00N.01A	20	30432321	30474933	16	-0.8572	SMALL-LOSS	FOCAL	3	"DUSP15,FOXS1,TTLL9"
TCGA.AA.A00N.01A	20	30526896	30538052	6	-1.2065	SMALL-LOSS	FOCAL	2	"PDRG1,TTLL9"
TCGA.AA.A010.01A	20	30530690	30617456	17	-1.1766	SMALL-LOSS	FOCAL	4	"CCM2L,PDRG1,TTLL9,XKR7"
TCGA.AA.A010.01A	20	30720768	30918978	36	-0.6374	SMALL-LOSS	FOCAL	4	"KIF3B,PLAGL2,POFUT1,TM9SF4"
TCGA.AA.A00N.01A	20	30749043	30804771	9	-0.7655	SMALL-LOSS	FOCAL	3	"PLAGL2,POFUT1,TM9SF4"
TCGA.A6.3808.01A	20	30897539	31294327	47	-0.76	SMALL-LOSS	FOCAL	5	"ASXL1,C20orf203,COMMD7,KIF3B,NOL4L"
TCGA.AA.A00N.01A	20	30946536	31097609	25	-1.042	SMALL-LOSS	FOCAL	2	"ASXL1,NOL4L"
TCGA.AA.A01Q.01A	20	31760686	31768258	6	-0.5307	SMALL-LOSS	FOCAL	1	BPIFA2
TCGA.AG.A026	20	31811127	31817603	4	-0.9107	SMALL-LOSS	FOCAL	1	BPIFA3
TCGA.AA.A00N.01A	20	32250102	32302410	15	-0.6449	SMALL-LOSS	FOCAL	5	"ACTL10,C20orf144,E2F1,NECAB3,PXMP4"
TCGA.AG.4009.01A	20	32255272	32302410	12	-0.7233	SMALL-LOSS	FOCAL	4	"ACTL10,E2F1,NECAB3,PXMP4"
TCGA.AA.A00N.01A	20	32438706	32850579	20	-0.9965	SMALL-LOSS	FOCAL	4	"ASIP,CHMP4B,EIF2S2,RALY"
TCGA.AA.A010.01A	20	33045156	33080253	12	-1.2083	SMALL-LOSS	FOCAL	1	ITCH
TCGA.AA.A00N.01A	20	33077023	33095463	5	-0.9329	SMALL-LOSS	FOCAL	1	ITCH
TCGA.AA.A010.01A	20	33563284	33603759	35	-0.5263	SMALL-LOSS	FOCAL	2	"MYH7B,TRPC4AP"
TCGA.AA.A00N.01A	20	33593467	33603759	7	-1.0897	SMALL-LOSS	FOCAL	1	TRPC4AP
TCGA.AA.A010.01A	20	33719397	33842253	14	-0.6857	SMALL-LOSS	FOCAL	3	"EDEM2,MMP24,PROCR"
TCGA.AA.A00N.01A	20	33730139	33902433	29	-0.5707	SMALL-LOSS	FOCAL	6	"EDEM2,EIF6,FAM83C,MMP24,PROCR,UQCC1"
TCGA.AA.A01Q.01A	20	33866923	33879587	10	-0.5462	SMALL-LOSS	FOCAL	2	"EIF6,FAM83C"
TCGA.AA.A00N.01A	20	34130485	34278298	38	-0.5517	SMALL-LOSS	FOCAL	5	"CPNE1,ERGIC3,NFS1,RBM12,SPAG4"
TCGA.AA.A00N.01A	20	34284264	34300922	11	-1.2757	SMALL-LOSS	FOCAL	3	"NFS1,RBM39,ROMO1"
TCGA.AA.A00N.01A	20	35071057	35243587	22	-0.5204	SMALL-LOSS	FOCAL	6	"C20orf24,DLGAP4,MYL9,SLA2,TGIF2,TGIF2-C20orf24"
TCGA.AA.A00N.01A	20	35284707	35350021	13	-0.6175	SMALL-LOSS	FOCAL	1	NDRG3
TCGA.AG.3909.01A	20	35390806	35425234	7	-0.7053	SMALL-LOSS	FOCAL	2	"DSN1,SOGA1"
TCGA.AA.A010.01A	20	35467640	35526796	11	-1.0014	SMALL-LOSS	FOCAL	3	"SAMHD1,SOGA1,TLDC2"
TCGA.AA.A00N.01A	20	35569382	35802381	46	-1.2654	SMALL-LOSS	FOCAL	3	"MROH8,RBL1,SAMHD1"
TCGA.AG.4009.01A	20	35627122	35635794	3	-0.6074	SMALL-LOSS	FOCAL	1	RBL1
TCGA.AA.A010.01A	20	35627122	35663618	8	-1.2834	SMALL-LOSS	FOCAL	1	RBL1
TCGA.AA.A01Q.01A	20	36014431	36031532	10	-1.1978	SMALL-LOSS	FOCAL	1	SRC
TCGA.AA.3930.01A	20	36974883	36983681	5	-0.6934	SMALL-LOSS	FOCAL	1	LBP
TCGA.AA.A010.01A	20	36989303	37128053	14	-0.5393	SMALL-LOSS	FOCAL	2	"LBP,RALGAPB"
TCGA.AA.A00N.01A	20	36993181	37154496	19	-1.0137	SMALL-LOSS	FOCAL	2	"LBP,RALGAPB"
TCGA.CA.5256	20	37010805	37012293	4	-0.9845	SMALL-LOSS	FOCAL	0	None
TCGA.DC.5337	20	37010805	37012293	4	-0.7623	SMALL-LOSS	FOCAL	0	None
TCGA.NH.A6GC	20	37010805	37012293	4	-0.717	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3496	20	37010805	37018832	5	-0.6795	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	37353361	37396090	10	-0.9204	SMALL-LOSS	FOCAL	2	"ACTR5,SLC32A1"
TCGA.AA.A00N.01A	20	37378626	37396090	7	-1.2249	SMALL-LOSS	FOCAL	1	ACTR5
TCGA.AA.3941	20	38233162	38236645	5	-0.7632	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3664	20	38236645	41947911	1548	-0.8529	SMALL-LOSS	FOCAL	8	"CHD6,EMILIN3,LPIN3,MAFB,PLCG1,PTPRT,TOP1,ZHX3"
TCGA.AA.3941	20	38254586	38261654	8	-0.5657	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	20	38319562	38835773	205	-0.57575	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	20	38518219	38523263	4	-0.7485	SMALL-LOSS	FOCAL	0	None
TCGA.AF.A56L	20	38644761	38646606	4	-0.8528	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	20	38648698	38651513	4	-1.2551	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	39725822	39751788	12	-0.6929	SMALL-LOSS	FOCAL	1	TOP1
TCGA.AA.A01Q.01A	20	39793554	39798715	8	-0.5523	SMALL-LOSS	FOCAL	1	PLCG1
TCGA.AA.A01Q.01A	20	39978376	39993623	13	-0.8694	SMALL-LOSS	FOCAL	2	"EMILIN3,LPIN3"
TCGA.AA.A010.01A	20	40161712	40709448	4	-0.9127	SMALL-LOSS	FOCAL	2	"CHD6,PTPRT"
TCGA.AA.A01S	20	40931327	40931820	3	-1.15115	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3982	20	41074303	41074728	3	-1.2478	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3982	20	41178699	41181176	5	-0.9362	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3941	20	41178699	41185137	8	-0.543	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3844	20	41286042	41287844	4	-0.91	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3982	20	41286042	41287844	4	-0.9346	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3844	20	41441479	41443005	4	-0.5686	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3982	20	41441479	41443005	4	-0.7523	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3844	20	41516698	41517390	3	-1.1258	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3941	20	41516698	41517390	3	-1.1818	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.D5.5537	20	41532290	41534887	3	-1.1305	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.3941	20	41743988	41745490	4	-0.5613	SMALL-LOSS	FOCAL	1	PTPRT
TCGA.AA.A00N.01A	20	42086667	42144674	10	-0.851	SMALL-LOSS	FOCAL	2	"L3MBTL1,SRSF6"
TCGA.AA.A00N.01A	20	42252479	42315480	10	-0.5465	SMALL-LOSS	FOCAL	2	"IFT52,MYBL2"
TCGA.AA.3850	20	42731843	42735906	4	-1.07125	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	20	43246875	43249642	4	-0.6554	SMALL-LOSS	FOCAL	2	"ADA,PKIG"
TCGA.CM.6168	20	43276119	43278053	3	-1.2182	SMALL-LOSS	FOCAL	1	ADA
TCGA.AA.A010.01A	20	43378769	43438778	7	-1.194	SMALL-LOSS	FOCAL	2	"KCNK15,RIMS4"
TCGA.AG.3909.01A	20	43530135	43541250	6	-0.7944	SMALL-LOSS	FOCAL	2	"PABPC1L,YWHAB"
TCGA.AA.A00N.01A	20	43567706	43615721	15	-1.1014	SMALL-LOSS	FOCAL	3	"PABPC1L,STK4,TOMM34"
TCGA.AA.A010.01A	20	43703627	43752498	8	-1.1762	SMALL-LOSS	FOCAL	4	"KCNS1,STK4,WFDC12,WFDC5"
TCGA.AA.A00N.01A	20	43723469	43738342	4	-0.5294	SMALL-LOSS	FOCAL	2	"KCNS1,WFDC5"
TCGA.AA.A00N.01A	20	43922340	43964374	19	-0.5292	SMALL-LOSS	FOCAL	3	"MATN4,RBPJL,SDC4"
TCGA.AA.A00N.01A	20	44099725	44141259	4	-1.1166	SMALL-LOSS	FOCAL	2	"SPINT3,WFDC2"
TCGA.AA.A00N.01A	20	44416423	44482507	35	-0.642	SMALL-LOSS	FOCAL	6	"ACOT8,DNTTIP1,SNX21,TNNC2,UBE2C,WFDC3"
TCGA.AA.A00N.01A	20	44505305	44526312	19	-0.717	SMALL-LOSS	FOCAL	5	"CTSA,NEURL2,SPATA25,ZSWIM1,ZSWIM3"
TCGA.AA.A00N.01A	20	44638458	44681556	28	-0.6054	SMALL-LOSS	FOCAL	2	"MMP9,SLC12A5"
TCGA.AA.A010.01A	20	44663535	44692012	25	-0.6865	SMALL-LOSS	FOCAL	2	"NCOA5,SLC12A5"
TCGA.AG.3909.01A	20	44681556	44707943	14	-0.55	SMALL-LOSS	FOCAL	2	"NCOA5,SLC12A5"
TCGA.AA.A00N.01A	20	44682188	44707943	13	-1.2837	SMALL-LOSS	FOCAL	2	"NCOA5,SLC12A5"
TCGA.G4.6298	20	44741452	44742063	3	-1.3069	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	20	44995977	45169864	26	-0.7046	SMALL-LOSS	FOCAL	3	"ELMO2,OCSTAMP,ZNF334"
TCGA.NH.A8F7	20	47052320	47058676	3	-0.5447	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	20	47645016	47679737	5	-0.61	SMALL-LOSS	FOCAL	2	"ARFGEF2,CSE1L"
TCGA.AA.A00N.01A	20	47837942	47841404	4	-1.1474	SMALL-LOSS	FOCAL	1	DDX27
TCGA.AM.5820	20	47955886	48592387	199	-0.7136	SMALL-LOSS	FOCAL	6	"B4GALT5,KCNB1,PTGIS,RNF114,SLC9A8,SPATA2"
TCGA.AA.A00N.01A	20	49551620	50179037	24	-0.7211	SMALL-LOSS	FOCAL	4	"DPM1,KCNG1,MOCS3,NFATC2"
TCGA.DM.A1HA	20	49905726	49907946	4	-0.911	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1HA	20	49922224	49928419	8	-0.6695	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	20	50384773	50714930	10	-0.7503	SMALL-LOSS	FOCAL	3	"ATP9A,SALL4,ZFP64"
TCGA.AZ.6598	20	50652936	50659152	4	-0.5785	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3697	20	51152562	51222942	21	-0.7019	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3844	20	51360153	51360639	3	-1.1006	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3864	20	51360153	51361283	4	-1.0762	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2685	20	51922070	51923038	4	-0.9634	SMALL-LOSS	FOCAL	1	TSHZ2
TCGA.AA.A010.01A	20	52185608	52557954	8	-0.5599	SMALL-LOSS	FOCAL	1	ZNF217
TCGA.G5.6641	20	52647807	52654218	4	-0.6636	SMALL-LOSS	FOCAL	1	BCAS1
TCGA.AZ.4681	20	52647807	52658592	8	-0.9515	SMALL-LOSS	FOCAL	1	BCAS1
TCGA.D5.5540	20	52651153	52654546	4	-0.6993	SMALL-LOSS	FOCAL	1	BCAS1
TCGA.AG.3893	20	52651153	52658592	7	-0.8775	SMALL-LOSS	FOCAL	1	BCAS1
TCGA.G5.6235	20	52807959	52808778	3	-1.2951	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A71X	20	53305316	54780375	697	-0.7369	SMALL-LOSS	FOCAL	1	CBLN4
TCGA.AA.A010.01A	20	54935208	54957991	7	-1.1102	SMALL-LOSS	FOCAL	2	"AURKA,FAM210B"
TCGA.A6.5665	20	55070742	55371580	115	-1.1333	SMALL-LOSS	FOCAL	5	"FAM209A,FAM209B,GCNT7,RTFDC1,TFAP2C"
TCGA.DC.6157	20	55128694	55143333	4	-0.8427	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	20	55906838	56182080	46	-1.28	SMALL-LOSS	FOCAL	7	"CTCFL,MTRNR2L3,PCK1,RAE1,RBM38,SPO11,ZBP1"
TCGA.AA.A00N.01A	20	55966607	56098710	16	-0.7548	SMALL-LOSS	FOCAL	2	"CTCFL,RBM38"
TCGA.AA.A010.01A	20	56265365	56735700	8	-0.8777	SMALL-LOSS	FOCAL	2	"C20orf85,PMEPA1"
TCGA.AA.3561	20	56557611	56562915	3	-0.608	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	20	57227012	57251206	9	-0.994	SMALL-LOSS	FOCAL	1	STX16
TCGA.AG.4009.01A	20	57561101	57613471	26	-0.5755	SMALL-LOSS	FOCAL	5	"ATP5E,CTSZ,NELFCD,SLMO2,TUBB1"
TCGA.AA.A00N.01A	20	57561101	57781943	33	-1.1645	SMALL-LOSS	FOCAL	6	"ATP5E,CTSZ,NELFCD,SLMO2,TUBB1,ZNF831"
TCGA.AA.A010.01A	20	57576483	57613471	11	-1.0793	SMALL-LOSS	FOCAL	4	"ATP5E,CTSZ,SLMO2,TUBB1"
TCGA.CM.5864	20	58308214	58313076	5	-0.5558	SMALL-LOSS	FOCAL	1	PHACTR3
TCGA.AA.3956	20	58308306	58312293	3	-0.8427	SMALL-LOSS	FOCAL	1	PHACTR3
TCGA.AA.A010.01A	20	58439306	58487350	29	-0.5538	SMALL-LOSS	FOCAL	1	SYCP2
TCGA.AA.A00N.01A	20	58482368	58523212	18	-1.2536	SMALL-LOSS	FOCAL	3	"FAM217B,PPP1R3D,SYCP2"
TCGA.A6.3808.01A	20	58645605	60878595	87	-0.7863	SMALL-LOSS	FOCAL	10	"ADRM1,C20orf197,CDH4,HRH3,LSM14B,MTG2,OSBPL2,PSMA7,SS18L1,TAF4"
TCGA.AA.3941	20	58727929	58728823	4	-0.5655	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6856	20	58826700	58831938	4	-1.0213	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3867	20	59111044	59122692	3	-0.5687	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6856	20	59111044	59128380	5	-0.9567	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3855	20	59113708	59122692	3	-1.237	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6809	20	59113708	59122692	3	-0.6832	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3979	20	59681797	59685143	3	-0.6431	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Q.01A	20	59829835	60572579	18	-0.5743	SMALL-LOSS	FOCAL	2	"CDH4,TAF4"
TCGA.AZ.4682	20	59898278	59901522	3	-1.0785	SMALL-LOSS	FOCAL	1	CDH4
TCGA.DM.A28H	20	60275764	60276566	3	-0.7699	SMALL-LOSS	FOCAL	1	CDH4
TCGA.AA.3930.01A	20	60509064	60551176	3	-0.7854	SMALL-LOSS	FOCAL	2	"CDH4,TAF4"
TCGA.AG.3909.01A	20	60511766	60699656	16	-0.5968	SMALL-LOSS	FOCAL	3	"CDH4,LSM14B,TAF4"
TCGA.AA.A00N.01A	20	60511766	60715834	34	-1.2239	SMALL-LOSS	FOCAL	4	"CDH4,LSM14B,PSMA7,TAF4"
TCGA.AA.A01Q.01A	20	60573124	60715834	20	-1.1672	SMALL-LOSS	FOCAL	3	"LSM14B,PSMA7,TAF4"
TCGA.AG.4009.01A	20	60699656	60715834	12	-0.8999	SMALL-LOSS	FOCAL	2	"LSM14B,PSMA7"
TCGA.AA.A010.01A	20	60736450	60754155	8	-0.7503	SMALL-LOSS	FOCAL	1	SS18L1
TCGA.AD.A5EK	20	60777069	60798311	4	-1.2154	SMALL-LOSS	FOCAL	2	"HRH3,MTG2"
TCGA.AA.A01Q.01A	20	60831158	60859052	9	-0.7145	SMALL-LOSS	FOCAL	1	OSBPL2
TCGA.AA.A010.01A	20	60920807	60928143	6	-0.9299	SMALL-LOSS	FOCAL	1	LAMA5
TCGA.AD.A5EK	20	61375575	61429143	16	-1.1467	SMALL-LOSS	FOCAL	2	"MRGBP,NTSR1"
TCGA.AG.4009.01A	20	61428413	61458529	14	-0.822	SMALL-LOSS	FOCAL	3	"COL9A3,MRGBP,OGFR"
TCGA.AA.3930.01A	20	61442767	61464307	18	-0.6351	SMALL-LOSS	FOCAL	2	"COL9A3,OGFR"
TCGA.AA.A010.01A	20	61443545	61471843	27	-1.2346	SMALL-LOSS	FOCAL	2	"COL9A3,OGFR"
TCGA.AA.A010.01A	20	61492818	61542078	16	-0.9493	SMALL-LOSS	FOCAL	2	"DIDO1,TCFL5"
TCGA.AG.3909.01A	20	61522245	61574292	15	-0.6387	SMALL-LOSS	FOCAL	2	"DIDO1,GID8"
TCGA.AA.A010.01A	20	61584134	61809805	16	-0.8069	SMALL-LOSS	FOCAL	2	"BHLHE23,SLC17A9"
TCGA.AA.A010.01A	20	61847142	61917344	26	-1.0359	SMALL-LOSS	FOCAL	4	"ARFGAP1,BIRC7,NKAIN4,YTHDF1"
TCGA.AA.A010.01A	20	61958048	62103491	27	-0.8359	SMALL-LOSS	FOCAL	3	"CHRNA4,COL20A1,KCNQ2"
TCGA.AA.A010.01A	20	62152588	62164857	7	-0.97	SMALL-LOSS	FOCAL	2	"PPDPF,PTK6"
TCGA.AA.A01Q.01A	20	62193855	62223328	10	-0.5583	SMALL-LOSS	FOCAL	2	"GMEB2,HELZ2"
TCGA.DC.6160.01A	20	62194486	62374968	30	-0.5358	SMALL-LOSS	FOCAL	9	"ARFRP1,GMEB2,HELZ2,LIME1,RTEL1,SLC2A4RG,STMN3,TNFRSF6B,ZGPAT"
TCGA.AA.A010.01A	20	62303845	62331762	22	-0.7898	SMALL-LOSS	FOCAL	3	"ARFRP1,RTEL1,TNFRSF6B"
TCGA.AA.A01Q.01A	20	62364531	62559676	24	-0.7428	SMALL-LOSS	FOCAL	7	"ABHD16B,DNAJC5,LIME1,SLC2A4RG,TPD52L2,ZBTB46,ZGPAT"
TCGA.AA.A010.01A	20	62559676	62587585	15	-0.9663	SMALL-LOSS	FOCAL	2	"DNAJC5,UCKL1"
TCGA.AA.A01Q.01A	20	62831174	62853199	12	-0.7969	SMALL-LOSS	FOCAL	1	MYT1
TCGA.AG.4009.01A	20	62838900	62904524	21	-0.6054	SMALL-LOSS	FOCAL	2	"MYT1,PCMTD2"
TCGA.AG.3909.01A	20	62842529	62850232	5	-0.7414	SMALL-LOSS	FOCAL	1	MYT1
TCGA.AG.3909.01A	20	62871646	62904524	6	-1.2341	SMALL-LOSS	FOCAL	2	"MYT1,PCMTD2"
TCGA.AA.3867	20	62871657	62872258	3	-0.5631	SMALL-LOSS	FOCAL	1	MYT1
TCGA.AA.3930.01A	21	10862558	10862869	2	-1.0998	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3906.01A	21	10862558	10862869	2	-0.7083	SMALL-LOSS	FOCAL	0	None
TCGA.A6.3808.01A	21	10862558	15013644	27	-1.0661	SMALL-LOSS	FOCAL	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.AA.A010.01A	21	10862558	15524852	32	-0.5489	SMALL-LOSS	FOCAL	8	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED,TPTE"
TCGA.AA.A00N.01A	21	10969005	10973629	4	-0.7146	SMALL-LOSS	FOCAL	1	TPTE
TCGA.AZ.5407	21	10971565	14369206	2	-0.5544	SMALL-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.F4.6569	21	10971565	14369206	2	-0.8343	SMALL-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.CM.6676	21	10971565	14597008	4	-0.7711	SMALL-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AA.3522	21	10971565	14635152	6	-0.843	SMALL-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.DC.4745	21	10971565	14673849	10	-0.6072	SMALL-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AF.A56K	21	10971565	14688348	12	-0.8723	SMALL-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.AG.3728	21	10971565	14688348	12	-0.9492	SMALL-LOSS	FOCAL	6	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,TPTE"
TCGA.A6.5661	21	10971565	15206016	42	-1.0943	SMALL-LOSS	FOCAL	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.AU.3779	21	10971565	15378780	57	-0.603	SMALL-LOSS	FOCAL	7	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,POTED,TPTE"
TCGA.AG.3882	21	10971565	15552720	95	-0.8837	SMALL-LOSS	FOCAL	8	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,LIPI,POTED,TPTE"
TCGA.DC.6157	21	14642463	15474152	63	-0.695	SMALL-LOSS	FOCAL	1	POTED
TCGA.DC.4745	21	14770131	15424367	43	-1.0759	SMALL-LOSS	FOCAL	1	POTED
TCGA.AZ.4681	21	14838856	15203800	6	-1.1993	SMALL-LOSS	FOCAL	1	POTED
TCGA.AG.3906.01A	21	14982528	15013644	6	-1.2145	SMALL-LOSS	FOCAL	1	POTED
TCGA.CK.5914.01A	21	15554032	15753587	13	-0.8534	SMALL-LOSS	FOCAL	3	"HSPA13,LIPI,RBM11"
TCGA.AA.3870	21	15554349	16981345	560	-0.6056	SMALL-LOSS	FOCAL	6	"HSPA13,LIPI,LOC388813,NRIP1,RBM11,SAMSN1"
TCGA.AA.A00N.01A	21	15579089	15599163	6	-1.1273	SMALL-LOSS	FOCAL	2	"LIPI,RBM11"
TCGA.DC.4745	21	15628667	17193710	604	-0.6726	SMALL-LOSS	FOCAL	5	"HSPA13,LOC388813,NRIP1,SAMSN1,USP25"
TCGA.AG.3882	21	15930172	17229623	489	-0.7713	SMALL-LOSS	FOCAL	4	"LOC388813,NRIP1,SAMSN1,USP25"
TCGA.AG.3732	21	16250103	16460408	66	-0.5838	SMALL-LOSS	FOCAL	1	NRIP1
TCGA.F5.6810	21	17296378	20925879	1333	-0.998	SMALL-LOSS	FOCAL	5	"BTG3,C21orf91,CHODL,CXADR,TMPRSS15"
TCGA.AG.3882	21	17344652	17363808	7	-0.7302	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	17693664	17698323	3	-0.8442	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	17841906	17843931	7	-0.9577	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D7	21	17903972	17920137	4	-0.9768	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	21	17962505	18821104	3	-1.1995	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	18030763	18905397	275	-0.729	SMALL-LOSS	FOCAL	1	CXADR
TCGA.DM.A28K	21	18758842	20684309	789	-0.8748	SMALL-LOSS	FOCAL	5	"BTG3,C21orf91,CHODL,CXADR,TMPRSS15"
TCGA.DC.4745	21	18867058	19372211	198	-0.6252	SMALL-LOSS	FOCAL	4	"BTG3,C21orf91,CHODL,CXADR"
TCGA.AG.3909.01A	21	18966384	19635066	11	-0.7887	SMALL-LOSS	FOCAL	3	"BTG3,C21orf91,CHODL"
TCGA.AA.A00N.01A	21	18970907	19632474	10	-0.9098	SMALL-LOSS	FOCAL	3	"BTG3,C21orf91,CHODL"
TCGA.CK.5914.01A	21	18970907	19704369	24	-0.7886	SMALL-LOSS	FOCAL	4	"BTG3,C21orf91,CHODL,TMPRSS15"
TCGA.DM.A28H	21	19410641	19415651	3	-1.0603	SMALL-LOSS	FOCAL	1	CHODL
TCGA.DC.4745	21	19536384	19636977	30	-0.7	SMALL-LOSS	FOCAL	1	CHODL
TCGA.AD.6965	21	19636305	19639194	3	-1.2369	SMALL-LOSS	FOCAL	1	CHODL
TCGA.AG.3882	21	19661871	25455928	2188	-0.594	SMALL-LOSS	FOCAL	2	"NCAM2,TMPRSS15"
TCGA.AG.A014.01A	21	19666549	22910126	38	-0.6739	SMALL-LOSS	FOCAL	2	"NCAM2,TMPRSS15"
TCGA.DC.4745	21	19865061	19868790	6	-0.7108	SMALL-LOSS	FOCAL	0	None
TCGA.DC.4745	21	20310362	21213235	325	-0.8509	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4681	21	20602285	26795757	2280	-0.9522	SMALL-LOSS	FOCAL	1	NCAM2
TCGA.F5.6810	21	21167607	21306862	60	-0.9448	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4015	21	21232433	21241618	11	-0.5483	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4015	21	21339853	21535471	50	-0.5274	SMALL-LOSS	FOCAL	0	None
TCGA.F5.6810	21	21339853	23221979	723	-1.0315	SMALL-LOSS	FOCAL	1	NCAM2
TCGA.DM.A28K	21	21497744	22000597	204	-1.0781	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Z	21	21584446	21636663	16	-0.8428	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3556	21	21769137	21835178	39	-0.6065	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3544	21	21835178	24506240	967	-0.8217	SMALL-LOSS	FOCAL	1	NCAM2
TCGA.DC.4745	21	22036530	22111706	29	-0.9693	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6533	21	22077643	26356176	1628	-0.8479	SMALL-LOSS	FOCAL	1	NCAM2
TCGA.DC.4745	21	22572676	23332325	305	-0.8178	SMALL-LOSS	FOCAL	1	NCAM2
TCGA.4N.A93T	21	22615741	22619692	4	-1.1419	SMALL-LOSS	FOCAL	1	NCAM2
TCGA.AA.3967.01A	21	22652856	22838910	12	-1.0757	SMALL-LOSS	FOCAL	1	NCAM2
TCGA.DM.A1D7	21	22790935	23940998	439	-0.6032	SMALL-LOSS	FOCAL	1	NCAM2
TCGA.AD.6901	21	23107063	24912362	642	-0.6528	SMALL-LOSS	FOCAL	0	None
TCGA.DC.4745	21	23340049	24099294	246	-0.8012	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Z	21	23383453	23399275	10	-0.6404	SMALL-LOSS	FOCAL	0	None
TCGA.F5.6810	21	23472137	24508453	321	-0.9372	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Z	21	23556001	23642859	21	-0.9537	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6158	21	23571307	25524624	734	-0.5593	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A1D0	21	23655899	23664657	5	-1.0452	SMALL-LOSS	FOCAL	0	None
TCGA.DM.A28K	21	23655899	23664657	5	-1.1908	SMALL-LOSS	FOCAL	0	None
TCGA.G4.6299	21	23655899	23664657	5	-1.2798	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Z	21	23674286	25666285	771	-0.9196	SMALL-LOSS	FOCAL	0	None
TCGA.AF.A56L	21	24021388	24023933	5	-0.9329	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3728	21	24023777	24030706	7	-1.2288	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DC	21	24091612	24092824	3	-1.1824	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6931	21	24091612	24093216	4	-1.1438	SMALL-LOSS	FOCAL	0	None
TCGA.AD.6889	21	24259856	25383258	443	-0.7572	SMALL-LOSS	FOCAL	0	None
TCGA.F5.6863	21	24331591	25519725	505	-0.7108	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4015	21	24755221	25594015	379	-0.5169	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6137	21	25296169	25299688	3	-1.0456	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6924	21	25544866	25822973	91	-0.7779	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6158	21	25551824	25728625	64	-0.5317	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	26070726	26660724	223	-0.8112	SMALL-LOSS	FOCAL	0	None
TCGA.DC.6158	21	26071027	27813704	637	-0.594	SMALL-LOSS	FOCAL	5	"APP,ATP5J,GABPA,JAM2,MRPL39"
TCGA.DM.A1HB	21	26229826	26232567	3	-1.0556	SMALL-LOSS	FOCAL	0	None
TCGA.DC.4745	21	26283047	26385725	24	-0.8701	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3544	21	26451632	28139264	637	-0.7299	SMALL-LOSS	FOCAL	6	"APP,ATP5J,CYYR1,GABPA,JAM2,MRPL39"
TCGA.DC.4745	21	26660724	26674475	6	-1.1662	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6533	21	26703774	28008042	482	-0.7372	SMALL-LOSS	FOCAL	6	"APP,ATP5J,CYYR1,GABPA,JAM2,MRPL39"
TCGA.AG.3882	21	26919415	26938484	11	-0.6642	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	21	26946227	27141298	34	-0.967	SMALL-LOSS	FOCAL	4	"ATP5J,GABPA,JAM2,MRPL39"
TCGA.CK.5914.01A	21	26959958	27101902	25	-1.1496	SMALL-LOSS	FOCAL	3	"ATP5J,JAM2,MRPL39"
TCGA.AG.4009.01A	21	27056141	27141298	22	-0.8206	SMALL-LOSS	FOCAL	3	"ATP5J,GABPA,JAM2"
TCGA.AF.3914.01A	21	27062137	27074430	4	-1.2322	SMALL-LOSS	FOCAL	1	JAM2
TCGA.DC.4745	21	27244908	27314944	32	-0.7421	SMALL-LOSS	FOCAL	1	APP
TCGA.AA.A00L.01A	21	27253943	28337589	37	-0.5705	SMALL-LOSS	FOCAL	4	"ADAMTS1,ADAMTS5,APP,CYYR1"
TCGA.AG.3882	21	27280037	27448786	70	-0.7981	SMALL-LOSS	FOCAL	1	APP
TCGA.AG.3882	21	27488766	27550427	31	-0.6207	SMALL-LOSS	FOCAL	1	APP
TCGA.DC.4745	21	27629853	30256282	1109	-0.8188	SMALL-LOSS	FOCAL	4	"ADAMTS1,ADAMTS5,CYYR1,N6AMT1"
TCGA.AG.3882	21	27720662	27747150	14	-0.6029	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	27749875	27780761	17	-1.1093	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	27834678	27937538	41	-0.6527	SMALL-LOSS	FOCAL	1	CYYR1
TCGA.AG.3909.01A	21	27938538	28214606	9	-1.1897	SMALL-LOSS	FOCAL	2	"ADAMTS1,CYYR1"
TCGA.AG.4009.01A	21	27938538	28337589	18	-0.8032	SMALL-LOSS	FOCAL	3	"ADAMTS1,ADAMTS5,CYYR1"
TCGA.AG.3882	21	28112755	28357998	134	-0.8247	SMALL-LOSS	FOCAL	2	"ADAMTS1,ADAMTS5"
TCGA.AA.A01Z	21	28204423	28306611	58	-1.0399	SMALL-LOSS	FOCAL	2	"ADAMTS1,ADAMTS5"
TCGA.AG.3882	21	28411653	28506624	50	-0.715	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	28630421	28851579	109	-0.6552	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	28920508	28934871	10	-1.0465	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	28946698	28953702	4	-1.1429	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	29023818	29168504	45	-0.7709	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	29468334	29683745	75	-0.6985	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3544	21	29922389	30390556	176	-0.6867	SMALL-LOSS	FOCAL	3	"LTN1,N6AMT1,RWDD2B"
TCGA.DC.6158	21	29922389	31511477	572	-0.5552	SMALL-LOSS	FOCAL	8	"BACH1,CCT8,GRIK1,LTN1,MAP3K7CL,N6AMT1,RWDD2B,USP16"
TCGA.AG.3882	21	29951288	29953931	4	-0.9503	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Z	21	30173339	30214978	13	-0.9069	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	30219020	31137936	290	-0.7831	SMALL-LOSS	FOCAL	8	"BACH1,CCT8,GRIK1,LTN1,MAP3K7CL,N6AMT1,RWDD2B,USP16"
TCGA.CK.5914.01A	21	30250464	30255250	4	-1.1759	SMALL-LOSS	FOCAL	1	N6AMT1
TCGA.AG.4009.01A	21	30353393	30380122	8	-0.9032	SMALL-LOSS	FOCAL	2	"LTN1,RWDD2B"
TCGA.AA.A00N.01A	21	30353393	30402875	11	-1.3174	SMALL-LOSS	FOCAL	3	"LTN1,RWDD2B,USP16"
TCGA.CK.5914.01A	21	30356996	30961141	56	-0.6169	SMALL-LOSS	FOCAL	7	"BACH1,CCT8,GRIK1,LTN1,MAP3K7CL,RWDD2B,USP16"
TCGA.AG.3906.01A	21	30407111	31066188	54	-0.5526	SMALL-LOSS	FOCAL	5	"BACH1,CCT8,GRIK1,MAP3K7CL,USP16"
TCGA.AA.A00N.01A	21	30437252	30464710	8	-0.7332	SMALL-LOSS	FOCAL	2	"CCT8,MAP3K7CL"
TCGA.DM.A1D0	21	30475479	30986576	168	-0.7905	SMALL-LOSS	FOCAL	3	"BACH1,GRIK1,MAP3K7CL"
TCGA.DC.4745	21	30507997	30582682	35	-0.7255	SMALL-LOSS	FOCAL	1	MAP3K7CL
TCGA.DM.A0XD	21	30536711	30663720	39	-0.616	SMALL-LOSS	FOCAL	1	MAP3K7CL
TCGA.DC.4745	21	30849832	30855856	4	-0.8213	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DG	21	31390506	31424341	18	-0.8796	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3972	21	32034535	32044808	6	-0.7262	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A01Z	21	32044808	32257276	59	-0.9091	SMALL-LOSS	FOCAL	6	"KRTAP11-1,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP7-1,KRTAP8-1"
TCGA.AA.3529	21	32324124	33034891	277	-0.5619	SMALL-LOSS	FOCAL	3	"KRTAP19-8,SOD1,TIAM1"
TCGA.RU.A8FL	21	32432249	32434137	3	-0.878	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DG	21	32475659	32516637	19	-0.622	SMALL-LOSS	FOCAL	1	TIAM1
TCGA.AG.A01W.01A	21	32627457	32635578	6	-0.7834	SMALL-LOSS	FOCAL	1	TIAM1
TCGA.AG.A026	21	32656461	32838534	86	-0.5804	SMALL-LOSS	FOCAL	1	TIAM1
TCGA.DY.A1DG	21	32698589	33233376	182	-0.5247	SMALL-LOSS	FOCAL	3	"SCAF4,SOD1,TIAM1"
TCGA.AG.3592	21	32746994	32794955	19	-0.6382	SMALL-LOSS	FOCAL	1	TIAM1
TCGA.AG.A01W.01A	21	32775238	32878296	13	-0.6428	SMALL-LOSS	FOCAL	1	TIAM1
TCGA.AG.A026	21	32858219	32870551	4	-0.6294	SMALL-LOSS	FOCAL	1	TIAM1
TCGA.AG.4009.01A	21	33032022	33043665	6	-1.0439	SMALL-LOSS	FOCAL	2	"SCAF4,SOD1"
TCGA.AG.3909.01A	21	33043665	33078532	17	-0.6542	SMALL-LOSS	FOCAL	1	SCAF4
TCGA.AA.3529	21	33059588	33147898	13	-0.5632	SMALL-LOSS	FOCAL	1	SCAF4
TCGA.DY.A1DG	21	33233765	34016677	299	-1.3139	SMALL-LOSS	FOCAL	8	"C21orf59,EVA1C,HUNK,MIS18A,MRAP,SYNJ1,TCP10L,URB1"
TCGA.AG.3909.01A	21	33974131	34025561	18	-1.044	SMALL-LOSS	FOCAL	2	"C21orf59,SYNJ1"
TCGA.AG.4009.01A	21	34007088	34015647	5	-0.9269	SMALL-LOSS	FOCAL	1	SYNJ1
TCGA.CM.6170	21	34084829	34693010	234	-0.9563	SMALL-LOSS	FOCAL	7	"C21orf62,IFNAR2,IL10RB,OLIG1,OLIG2,PAXBP1,SYNJ1"
TCGA.AG.3909.01A	21	34099054	34652010	34	-0.8942	SMALL-LOSS	FOCAL	7	"C21orf62,IFNAR2,IL10RB,OLIG1,OLIG2,PAXBP1,SYNJ1"
TCGA.AA.A010.01A	21	34107211	34634984	47	-0.6889	SMALL-LOSS	FOCAL	5	"C21orf62,IFNAR2,OLIG1,OLIG2,PAXBP1"
TCGA.AA.A00N.01A	21	34110447	34132049	12	-1.0177	SMALL-LOSS	FOCAL	1	PAXBP1
TCGA.AG.4009.01A	21	34120759	34640647	23	-0.9545	SMALL-LOSS	FOCAL	6	"C21orf62,IFNAR2,IL10RB,OLIG1,OLIG2,PAXBP1"
TCGA.AG.A01W.01A	21	34169497	34182298	7	-0.726	SMALL-LOSS	FOCAL	1	C21orf62
TCGA.AA.3982	21	34369214	34378522	4	-1.0994	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	21	34614138	34655357	16	-1.2602	SMALL-LOSS	FOCAL	2	"IFNAR2,IL10RB"
TCGA.A6.3808.01A	21	34713268	35195744	111	-1.2248	SMALL-LOSS	FOCAL	9	"CRYZL1,DNAJC28,DONSON,GART,IFNAR1,IFNGR2,ITSN1,SON,TMEM50B"
TCGA.AA.A010.01A	21	34783074	34841044	15	-0.6118	SMALL-LOSS	FOCAL	2	"IFNGR2,TMEM50B"
TCGA.CK.5914.01A	21	34876384	34904604	17	-0.5183	SMALL-LOSS	FOCAL	1	GART
TCGA.AA.A010.01A	21	34897040	34906847	8	-0.7257	SMALL-LOSS	FOCAL	1	GART
TCGA.AG.3909.01A	21	34904604	34947881	17	-1.2437	SMALL-LOSS	FOCAL	2	"GART,SON"
TCGA.AF.3914.01A	21	34915351	34929753	8	-0.7595	SMALL-LOSS	FOCAL	1	SON
TCGA.CK.5914.01A	21	34939435	34948634	7	-0.5383	SMALL-LOSS	FOCAL	1	SON
TCGA.AA.A010.01A	21	34956849	35012414	18	-1.0941	SMALL-LOSS	FOCAL	2	"CRYZL1,DONSON"
TCGA.AG.4009.01A	21	34967690	34971419	4	-1.0081	SMALL-LOSS	FOCAL	1	CRYZL1
TCGA.AG.3909.01A	21	34967690	34985782	7	-1.0055	SMALL-LOSS	FOCAL	1	CRYZL1
TCGA.AA.A00N.01A	21	34974510	35013451	9	-1.0375	SMALL-LOSS	FOCAL	1	CRYZL1
TCGA.AA.3666	21	35210195	35216759	4	-0.9526	SMALL-LOSS	FOCAL	1	ITSN1
TCGA.EF.5830	21	35216759	35985894	303	-0.763	SMALL-LOSS	FOCAL	10	"ATP5O,C21orf140,ITSN1,KCNE1,KCNE2,LOC400863,MRPS6,RCAN1,SLC5A3,SMIM11"
TCGA.F4.6459	21	35662413	36245235	226	-0.6244	SMALL-LOSS	FOCAL	7	"C21orf140,CLIC6,KCNE1,KCNE2,RCAN1,RUNX1,SMIM11"
TCGA.AZ.4684.01A	21	35898908	37787579	102	-0.5487	SMALL-LOSS	FOCAL	9	"CBR1,CBR3,CHAF1B,CLIC6,DOPEY2,MORC3,RCAN1,RUNX1,SETD4"
TCGA.F5.6863	21	36111200	36233175	44	-1.2554	SMALL-LOSS	FOCAL	1	RUNX1
TCGA.AA.A00N.01A	21	36252812	37536985	23	-1.055	SMALL-LOSS	FOCAL	5	"CBR1,CBR3,DOPEY2,RUNX1,SETD4"
TCGA.AG.3894	21	36255820	36328607	30	-0.7103	SMALL-LOSS	FOCAL	1	RUNX1
TCGA.AG.A01W.01A	21	36437087	36526933	17	-0.6629	SMALL-LOSS	FOCAL	0	None
TCGA.DC.4745	21	36537189	36972694	194	-0.7759	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A01W.01A	21	36541669	36663120	30	-0.6004	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4681	21	36661050	37521277	352	-0.826	SMALL-LOSS	FOCAL	3	"CBR1,CBR3,SETD4"
TCGA.DC.4745	21	37130887	38290210	403	-0.8922	SMALL-LOSS	FOCAL	9	"CBR1,CBR3,CHAF1B,CLDN14,DOPEY2,HLCS,MORC3,SETD4,SIM2"
TCGA.AA.3509.01A	21	37652517	37787579	37	-0.7561	SMALL-LOSS	FOCAL	3	"CHAF1B,DOPEY2,MORC3"
TCGA.AG.4009.01A	21	37652517	38467596	69	-0.6618	SMALL-LOSS	FOCAL	9	"CHAF1B,CLDN14,DOPEY2,HLCS,MORC3,PIGP,RIPPLY3,SIM2,TTC3"
TCGA.AA.A010.01A	21	37653729	37665589	6	-1.2802	SMALL-LOSS	FOCAL	1	DOPEY2
TCGA.AF.3914.01A	21	37653729	37665589	6	-1.2675	SMALL-LOSS	FOCAL	1	DOPEY2
TCGA.AA.A00N.01A	21	37692481	37741279	14	-0.6199	SMALL-LOSS	FOCAL	1	MORC3
TCGA.AF.3914.01A	21	37747444	37781641	10	-1.3206	SMALL-LOSS	FOCAL	2	"CHAF1B,MORC3"
TCGA.AG.3909.01A	21	37780993	38467596	41	-0.518	SMALL-LOSS	FOCAL	7	"CHAF1B,CLDN14,HLCS,PIGP,RIPPLY3,SIM2,TTC3"
TCGA.AA.A010.01A	21	38084781	38103294	5	-1.0032	SMALL-LOSS	FOCAL	1	SIM2
TCGA.AH.6644	21	38297649	38298379	3	-0.615	SMALL-LOSS	FOCAL	1	HLCS
TCGA.AA.A00N.01A	21	38385815	38467596	15	-1.1449	SMALL-LOSS	FOCAL	3	"PIGP,RIPPLY3,TTC3"
TCGA.AA.A010.01A	21	38437845	38467596	13	-0.9656	SMALL-LOSS	FOCAL	2	"PIGP,TTC3"
TCGA.AA.A00N.01A	21	38592524	38639467	9	-0.8375	SMALL-LOSS	FOCAL	1	DSCR3
TCGA.AG.3909.01A	21	38597799	38612760	7	-0.7319	SMALL-LOSS	FOCAL	1	DSCR3
TCGA.AA.3870	21	38785939	38795657	6	-0.8011	SMALL-LOSS	FOCAL	1	DYRK1A
TCGA.DC.4745	21	39154031	39799537	271	-0.8309	SMALL-LOSS	FOCAL	4	"DSCR4,ERG,KCNJ15,KCNJ6"
TCGA.CK.6748	21	39180798	39285632	76	-0.6165	SMALL-LOSS	FOCAL	1	KCNJ6
TCGA.CM.4746	21	40065302	40443615	199	-0.6157	SMALL-LOSS	FOCAL	1	ETS2
TCGA.AA.A010.01A	21	40181943	40550358	12	-0.5577	SMALL-LOSS	FOCAL	2	"ETS2,PSMG1"
TCGA.AG.4009.01A	21	40181943	40551795	13	-0.6584	SMALL-LOSS	FOCAL	2	"ETS2,PSMG1"
TCGA.CK.5914.01A	21	40181943	40572097	21	-1.2779	SMALL-LOSS	FOCAL	3	"BRWD1,ETS2,PSMG1"
TCGA.AA.A00N.01A	21	40181943	40581871	24	-1.24	SMALL-LOSS	FOCAL	3	"BRWD1,ETS2,PSMG1"
TCGA.AA.A01Q.01A	21	40547453	40553651	6	-0.5529	SMALL-LOSS	FOCAL	1	PSMG1
TCGA.CK.5914.01A	21	40630366	41032525	47	-0.8385	SMALL-LOSS	FOCAL	6	"B3GALT5,BRWD1,HMGN1,LCA5L,SH3BGR,WRB"
TCGA.AA.A00N.01A	21	40665740	40684700	5	-0.7235	SMALL-LOSS	FOCAL	1	BRWD1
TCGA.QL.A97D	21	40734722	40736472	3	-1.0243	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6648	21	40938314	40971504	24	-0.5337	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3882	21	41795055	42219987	237	-0.799	SMALL-LOSS	FOCAL	1	DSCAM
TCGA.AA.A00N.01A	21	42551106	43338923	108	-0.6268	SMALL-LOSS	FOCAL	9	"BACE2,C2CD2,FAM3B,MX1,MX2,PLAC4,PRDM15,RIPK4,TMPRSS2"
TCGA.CK.5914.01A	21	42778634	43732198	126	-0.9724	SMALL-LOSS	FOCAL	10	"ABCG1,C2CD2,MX1,MX2,PRDM15,RIPK4,TFF3,TMPRSS2,UMODL1,ZBTB21"
TCGA.AG.3909.01A	21	42860269	43259705	28	-1.1982	SMALL-LOSS	FOCAL	3	"PRDM15,RIPK4,TMPRSS2"
TCGA.AG.A01W.01A	21	43155144	43303216	15	-0.7543	SMALL-LOSS	FOCAL	2	"PRDM15,RIPK4"
TCGA.AA.3861.01A	21	43221448	43277238	22	-1.0558	SMALL-LOSS	FOCAL	1	PRDM15
TCGA.AA.A010.01A	21	43319145	43413427	17	-0.8474	SMALL-LOSS	FOCAL	2	"C2CD2,ZBTB21"
TCGA.AG.A01W.01A	21	43408176	43422663	6	-0.7333	SMALL-LOSS	FOCAL	1	ZBTB21
TCGA.AA.A010.01A	21	43621710	43691133	8	-1.2539	SMALL-LOSS	FOCAL	1	ABCG1
TCGA.AA.A00N.01A	21	43902683	44119008	29	-0.9686	SMALL-LOSS	FOCAL	3	"PDE9A,RSPH1,SLC37A1"
TCGA.AG.3909.01A	21	43916180	44492047	73	-0.7752	SMALL-LOSS	FOCAL	8	"CBS,ERVH48-1,NDUFV3,PDE9A,PKNOX1,RSPH1,SLC37A1,WDR4"
TCGA.AG.4009.01A	21	43938501	43955525	4	-0.7395	SMALL-LOSS	FOCAL	1	SLC37A1
TCGA.AG.4009.01A	21	44188261	44195342	5	-0.7733	SMALL-LOSS	FOCAL	1	PDE9A
TCGA.D5.6931	21	44216464	44273162	13	-0.8257	SMALL-LOSS	FOCAL	1	WDR4
TCGA.AG.4009.01A	21	44483014	44492047	5	-0.6932	SMALL-LOSS	FOCAL	1	CBS
TCGA.AA.A010.01A	21	44483014	44524372	12	-0.9605	SMALL-LOSS	FOCAL	2	"CBS,U2AF1"
TCGA.AA.3939.01A	21	44589163	45064123	20	-0.5579	SMALL-LOSS	FOCAL	3	"CRYAA,HSF2BP,SIK1"
TCGA.AG.4009.01A	21	44589163	45220351	52	-0.6364	SMALL-LOSS	FOCAL	7	"CRYAA,CSTB,HSF2BP,PDXK,RRP1,RRP1B,SIK1"
TCGA.AG.3909.01A	21	45064123	45105639	12	-0.7868	SMALL-LOSS	FOCAL	2	"HSF2BP,RRP1B"
TCGA.AA.A010.01A	21	45175803	45222128	15	-0.6849	SMALL-LOSS	FOCAL	3	"CSTB,PDXK,RRP1"
TCGA.AG.3909.01A	21	45213146	45390487	13	-0.766	SMALL-LOSS	FOCAL	2	"AGPAT3,RRP1"
TCGA.A6.3808.01A	21	45511767	45655104	37	-0.5334	SMALL-LOSS	FOCAL	4	"C21orf33,ICOSLG,PWP2,TRAPPC10"
TCGA.AG.3909.01A	21	45534454	45656760	23	-1.0796	SMALL-LOSS	FOCAL	3	"C21orf33,ICOSLG,PWP2"
TCGA.AA.A010.01A	21	45555890	45649382	10	-0.6123	SMALL-LOSS	FOCAL	2	"C21orf33,ICOSLG"
TCGA.AA.A01Q.01A	21	45736078	45783949	22	-0.6662	SMALL-LOSS	FOCAL	3	"C21orf2,PFKL,TRPM2"
TCGA.AG.3906.01A	21	45773533	45795684	6	-0.6082	SMALL-LOSS	FOCAL	1	TRPM2
TCGA.AG.3906.01A	21	45798863	45833722	8	-1.1147	SMALL-LOSS	FOCAL	1	TRPM2
TCGA.AG.3906.01A	21	45837773	45854960	6	-0.7473	SMALL-LOSS	FOCAL	1	TRPM2
TCGA.AA.A01Q.01A	21	45843485	45947217	18	-0.6579	SMALL-LOSS	FOCAL	3	"LRRC3,TRPM2,TSPEAR"
TCGA.AG.3909.01A	21	45846490	45959145	15	-0.9826	SMALL-LOSS	FOCAL	4	"KRTAP10-1,LRRC3,TRPM2,TSPEAR"
TCGA.AA.A010.01A	21	45858898	45938453	13	-1.0481	SMALL-LOSS	FOCAL	3	"LRRC3,TRPM2,TSPEAR"
TCGA.AG.3906.01A	21	45941728	45948288	4	-0.7287	SMALL-LOSS	FOCAL	1	TSPEAR
TCGA.AG.3906.01A	21	46191243	46645370	40	-0.6301	SMALL-LOSS	FOCAL	6	"ADARB1,FAM207A,ITGB2,PTTG1IP,SUMO3,UBE2G2"
TCGA.AA.A01Q.01A	21	46281036	46320218	12	-1.1299	SMALL-LOSS	FOCAL	2	"ITGB2,PTTG1IP"
TCGA.AA.3939.01A	21	46306217	46321370	11	-0.6716	SMALL-LOSS	FOCAL	1	ITGB2
TCGA.AA.A01Q.01A	21	46321370	46355491	8	-0.5565	SMALL-LOSS	FOCAL	1	ITGB2
TCGA.AG.3909.01A	21	46645370	46902625	22	-1.086	SMALL-LOSS	FOCAL	3	"ADARB1,COL18A1,POFUT2"
TCGA.AA.A010.01A	21	46645370	47407352	82	-0.5936	SMALL-LOSS	FOCAL	6	"ADARB1,COL18A1,COL6A1,PCBP3,POFUT2,SLC19A1"
TCGA.AA.A01Q.01A	21	46685359	46841244	10	-0.7967	SMALL-LOSS	FOCAL	2	"COL18A1,POFUT2"
TCGA.AG.3906.01A	21	46842277	47417266	39	-0.7731	SMALL-LOSS	FOCAL	4	"COL18A1,COL6A1,PCBP3,SLC19A1"
TCGA.AA.3693	21	46848438	46892650	7	-0.6633	SMALL-LOSS	FOCAL	1	COL18A1
TCGA.AA.A010.01A	21	47408924	47423343	20	-1.2515	SMALL-LOSS	FOCAL	1	COL6A1
TCGA.AG.4009.01A	21	47420165	47531892	7	-0.968	SMALL-LOSS	FOCAL	2	"COL6A1,COL6A2"
TCGA.AA.A010.01A	21	47531344	47575319	36	-0.6738	SMALL-LOSS	FOCAL	2	"COL6A2,FTCD"
TCGA.AG.3909.01A	21	47647419	47697389	25	-0.8937	SMALL-LOSS	FOCAL	2	"LSS,MCM3AP"
TCGA.AA.A00N.01A	21	47690278	47699867	6	-0.9243	SMALL-LOSS	FOCAL	1	MCM3AP
TCGA.EI.6885	21	47690803	47815038	27	-1.1445	SMALL-LOSS	FOCAL	4	"C21orf58,MCM3AP,PCNT,YBEY"
TCGA.AA.A010.01A	21	47695053	47706778	9	-0.935	SMALL-LOSS	FOCAL	2	"MCM3AP,YBEY"
TCGA.AG.4009.01A	21	47695053	47765983	16	-0.8493	SMALL-LOSS	FOCAL	4	"C21orf58,MCM3AP,PCNT,YBEY"
TCGA.A6.3808.01A	21	47700374	47878994	64	-1.2922	SMALL-LOSS	FOCAL	5	"C21orf58,DIP2A,MCM3AP,PCNT,YBEY"
TCGA.CK.5914.01A	21	47716014	47766640	15	-0.903	SMALL-LOSS	FOCAL	3	"C21orf58,PCNT,YBEY"
TCGA.AA.A00N.01A	21	47716014	47904619	58	-1.0449	SMALL-LOSS	FOCAL	4	"C21orf58,DIP2A,PCNT,YBEY"
TCGA.AA.A01Z	21	47757791	48084819	104	-0.9054	SMALL-LOSS	FOCAL	4	"DIP2A,PCNT,PRMT2,S100B"
TCGA.AA.A010.01A	21	47765983	47771294	6	-0.985	SMALL-LOSS	FOCAL	1	PCNT
TCGA.AA.A01Q.01A	21	47767298	47838070	25	-0.975	SMALL-LOSS	FOCAL	1	PCNT
TCGA.AA.A010.01A	21	47856843	47865117	8	-1.1813	SMALL-LOSS	FOCAL	1	PCNT
TCGA.AA.3967.01A	21	47904619	48084135	46	-0.8057	SMALL-LOSS	FOCAL	3	"DIP2A,PRMT2,S100B"
TCGA.CK.5914.01A	21	47918463	48084135	46	-0.7184	SMALL-LOSS	FOCAL	3	"DIP2A,PRMT2,S100B"
TCGA.AA.3526	21	48084627	48084819	3	-0.8226	SMALL-LOSS	FOCAL	1	PRMT2
TCGA.AA.3848	21	48084627	48084819	3	-0.8142	SMALL-LOSS	FOCAL	1	PRMT2
TCGA.AG.3726	21	48084627	48084819	3	-0.734	SMALL-LOSS	FOCAL	1	PRMT2
TCGA.AA.3693	21	48084746	48084819	2	-0.6298	SMALL-LOSS	FOCAL	1	PRMT2
TCGA.AA.3870	22	16055206	16061341	2	-0.627	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6142	22	16055206	16365494	3	-1.0337	SMALL-LOSS	FOCAL	1	POTEH
TCGA.AH.6897	22	16055206	16365494	3	-0.637	SMALL-LOSS	FOCAL	1	POTEH
TCGA.CK.5913	22	16055206	16365494	3	-1.183	SMALL-LOSS	FOCAL	1	POTEH
TCGA.DM.A1D7	22	16055206	16365494	3	-0.6314	SMALL-LOSS	FOCAL	1	POTEH
TCGA.DM.A28K	22	16055206	16365494	3	-0.9908	SMALL-LOSS	FOCAL	1	POTEH
TCGA.DC.5869	22	16055206	16877134	4	-0.6398	SMALL-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.AG.4015	22	16055206	16877229	5	-1.0094	SMALL-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.CL.4957	22	16055206	16877229	5	-1.289	SMALL-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.AA.3678	22	16055206	17023513	12	-0.8031	SMALL-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.AA.3684	22	16055206	17023513	13	-0.5279	SMALL-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.D5.6927	22	16055206	17023513	13	-0.527	SMALL-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.F5.6812	22	16055206	17023513	13	-0.7681	SMALL-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.CA.6719	22	16055206	17031071	15	-0.5588	SMALL-LOSS	FOCAL	2	"OR11H1,POTEH"
TCGA.DT.5265	22	16055206	17747194	203	-0.6202	SMALL-LOSS	FOCAL	9	"CCT8L2,CECR1,CECR5,CECR6,GAB4,IL17RA,OR11H1,POTEH,XKR3"
TCGA.AA.A00N.01A	22	16258257	17072448	8	-0.8759	SMALL-LOSS	FOCAL	3	"CCT8L2,OR11H1,POTEH"
TCGA.AG.4009.01A	22	16266947	17072448	8	-0.597	SMALL-LOSS	FOCAL	3	"CCT8L2,OR11H1,POTEH"
TCGA.AA.3939.01A	22	16266947	17446037	13	-0.5224	SMALL-LOSS	FOCAL	5	"CCT8L2,GAB4,OR11H1,POTEH,XKR3"
TCGA.AA.3530	22	17313797	17318681	8	-1.2587	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	22	17315457	17318332	6	-1.2954	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	22	17488782	17663443	24	-0.626	SMALL-LOSS	FOCAL	5	"CECR1,CECR5,CECR6,GAB4,IL17RA"
TCGA.AA.A00N.01A	22	17565953	17663443	24	-0.8016	SMALL-LOSS	FOCAL	4	"CECR1,CECR5,CECR6,IL17RA"
TCGA.AG.4009.01A	22	17577875	17663443	23	-0.7104	SMALL-LOSS	FOCAL	4	"CECR1,CECR5,CECR6,IL17RA"
TCGA.AA.3558	22	17892617	17899517	6	-0.8439	SMALL-LOSS	FOCAL	1	CECR2
TCGA.AG.3909.01A	22	18562591	18656485	17	-0.9263	SMALL-LOSS	FOCAL	3	"PEX26,TUBA8,USP18"
TCGA.AA.A00N.01A	22	18562591	18896095	20	-0.8384	SMALL-LOSS	FOCAL	4	"DGCR6,PEX26,TUBA8,USP18"
TCGA.DM.A28K	22	18626233	18629152	4	-1.2879	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	22	18640393	19170856	45	-0.6948	SMALL-LOSS	FOCAL	9	"CLTCL1,DGCR14,DGCR2,DGCR6,GSC2,PRODH,SLC25A1,TSSK2,USP18"
TCGA.AA.A010.01A	22	18909778	18918465	6	-0.6915	SMALL-LOSS	FOCAL	1	PRODH
TCGA.AA.A01Q.01A	22	18910581	19165208	29	-0.5962	SMALL-LOSS	FOCAL	6	"DGCR14,DGCR2,GSC2,PRODH,SLC25A1,TSSK2"
TCGA.AF.3914.01A	22	19118863	19175456	20	-0.9112	SMALL-LOSS	FOCAL	5	"CLTCL1,DGCR14,GSC2,SLC25A1,TSSK2"
TCGA.AG.A01W.01A	22	19142066	19248686	10	-0.5269	SMALL-LOSS	FOCAL	2	"CLTCL1,SLC25A1"
TCGA.AA.A00N.01A	22	19163606	19203572	17	-0.6748	SMALL-LOSS	FOCAL	2	"CLTCL1,SLC25A1"
TCGA.AA.A010.01A	22	19183789	19195621	4	-1.2334	SMALL-LOSS	FOCAL	1	CLTCL1
TCGA.AG.4009.01A	22	19395955	19423139	5	-1.0441	SMALL-LOSS	FOCAL	2	"HIRA,MRPL40"
TCGA.AG.3909.01A	22	19438139	19471338	16	-1.2596	SMALL-LOSS	FOCAL	2	"CDC45,UFD1L"
TCGA.A6.3810.01A	22	19702084	19753875	16	-0.7669	SMALL-LOSS	FOCAL	3	"GP1BB,SEPT5,TBX1"
TCGA.AG.4009.01A	22	19707085	19753235	7	-1.0148	SMALL-LOSS	FOCAL	3	"GP1BB,SEPT5,TBX1"
TCGA.AA.A01Q.01A	22	19747097	19799769	12	-0.9185	SMALL-LOSS	FOCAL	2	"GNB1L,TBX1"
TCGA.AA.3930.01A	22	20100039	20456330	35	-1.0049	SMALL-LOSS	FOCAL	8	"DGCR6L,LOC388849,RANBP1,RIMBP3,RTN4R,TMEM191B,TRMT2A,ZDHHC8"
TCGA.AA.A010.01A	22	20130231	20847372	50	-1.202	SMALL-LOSS	FOCAL	9	"DGCR6L,KLHL22,LOC388849,RIMBP3,RTN4R,SCARF2,TMEM191B,ZDHHC8,ZNF74"
TCGA.AA.A010.01A	22	21044594	21044991	3	-0.9	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	22	21062259	21068680	4	-0.6311	SMALL-LOSS	FOCAL	1	PI4KA
TCGA.CK.5914.01A	22	21224587	21388417	54	-0.5514	SMALL-LOSS	FOCAL	7	"AIFM3,CRKL,LZTR1,P2RX6,SLC7A4,SNAP29,THAP7"
TCGA.AA.A01Q.01A	22	21334989	21355527	22	-1.1116	SMALL-LOSS	FOCAL	3	"AIFM3,LZTR1,THAP7"
TCGA.AA.A010.01A	22	21341736	21350933	15	-0.7888	SMALL-LOSS	FOCAL	1	LZTR1
TCGA.AA.A02K.01A	22	21346453	21369417	12	-0.9	SMALL-LOSS	FOCAL	2	"LZTR1,THAP7"
TCGA.AG.4009.01A	22	21800382	22042984	31	-0.6168	SMALL-LOSS	FOCAL	9	"CCDC116,HIC2,PPIL2,RIMBP3B,RIMBP3C,SDF2L1,TMEM191C,UBE2L3,YDJC"
TCGA.A6.3808.01A	22	21921947	22029302	24	-0.9284	SMALL-LOSS	FOCAL	5	"CCDC116,PPIL2,SDF2L1,UBE2L3,YDJC"
TCGA.CK.5914.01A	22	21983267	22020303	12	-0.6091	SMALL-LOSS	FOCAL	4	"CCDC116,PPIL2,SDF2L1,YDJC"
TCGA.CK.5914.01A	22	22024145	22041886	13	-1.3032	SMALL-LOSS	FOCAL	1	PPIL2
TCGA.AA.A01Q.01A	22	22024145	22055376	18	-1.0938	SMALL-LOSS	FOCAL	2	"PPIL2,YPEL1"
TCGA.AA.A01Q.01A	22	22293852	22329965	16	-0.7149	SMALL-LOSS	FOCAL	2	"PPM1F,TOP3B"
TCGA.AG.4009.01A	22	22300218	22318253	8	-0.8002	SMALL-LOSS	FOCAL	2	"PPM1F,TOP3B"
TCGA.AA.3982	22	22490836	22496145	4	-0.9597	SMALL-LOSS	FOCAL	0	None
TCGA.AG.A016.01A	22	22735173	23401643	49	-0.5249	SMALL-LOSS	FOCAL	6	"GGTLC2,IGLL5,PRAME,RSPH14,ZNF280A,ZNF280B"
TCGA.AA.A00N.01A	22	22781815	22906030	15	-0.555	SMALL-LOSS	FOCAL	3	"PRAME,ZNF280A,ZNF280B"
TCGA.AA.A01Q.01A	22	23403940	23634686	33	-0.6293	SMALL-LOSS	FOCAL	4	"BCR,GNAZ,RAB36,RSPH14"
TCGA.AA.A010.01A	22	23437853	23503019	17	-0.5397	SMALL-LOSS	FOCAL	3	"GNAZ,RAB36,RSPH14"
TCGA.DM.A1HA	22	24014228	24097014	22	-0.9243	SMALL-LOSS	FOCAL	3	"RGL4,VPREB3,ZNF70"
TCGA.AG.4009.01A	22	24085935	24135694	14	-1.0584	SMALL-LOSS	FOCAL	6	"C22orf15,CHCHD10,MMP11,SMARCB1,VPREB3,ZNF70"
TCGA.AA.A010.01A	22	24085935	24145430	22	-0.6291	SMALL-LOSS	FOCAL	6	"C22orf15,CHCHD10,MMP11,SMARCB1,VPREB3,ZNF70"
TCGA.AA.A01Q.01A	22	24122504	24217234	22	-0.6527	SMALL-LOSS	FOCAL	4	"DERL3,MMP11,SLC2A11,SMARCB1"
TCGA.CK.5914.01A	22	24199087	24384078	34	-0.6508	SMALL-LOSS	FOCAL	8	"DDT,DDTL,GSTT1,GSTT2,GSTT2B,LOC391322,MIF,SLC2A11"
TCGA.AG.A01L.01A	22	24210660	24384078	22	-1.0711	SMALL-LOSS	FOCAL	8	"DDT,DDTL,GSTT1,GSTT2,GSTT2B,LOC391322,MIF,SLC2A11"
TCGA.AA.A010.01A	22	24237972	24439329	12	-0.6297	SMALL-LOSS	FOCAL	7	"CABIN1,DDT,DDTL,GSTT1,GSTT2,GSTT2B,LOC391322"
TCGA.AG.3890	22	24250644	24270776	12	-0.6621	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	22	24376386	24384078	5	-1.2584	SMALL-LOSS	FOCAL	1	GSTT1
TCGA.AA.A00N.01A	22	24452613	24462901	7	-1.0966	SMALL-LOSS	FOCAL	1	CABIN1
TCGA.AG.4009.01A	22	24458353	24479142	8	-0.6458	SMALL-LOSS	FOCAL	1	CABIN1
TCGA.AA.A010.01A	22	24530221	24580692	14	-0.594	SMALL-LOSS	FOCAL	2	"CABIN1,SUSD2"
TCGA.AG.4009.01A	22	24698162	24726177	6	-1.0536	SMALL-LOSS	FOCAL	1	SPECC1L
TCGA.AA.A010.01A	22	24698162	24836540	17	-0.5503	SMALL-LOSS	FOCAL	2	"ADORA2A,SPECC1L"
TCGA.AA.A01Q.01A	22	25747722	25755743	4	-0.6317	SMALL-LOSS	FOCAL	1	LRP5L
TCGA.AA.3517	22	26405072	27076983	349	-0.7191	SMALL-LOSS	FOCAL	9	"ASPHD2,CRYBA4,CRYBB1,HPS4,MYO18B,SEZ6L,SRRD,TFIP11,TPST2"
TCGA.AA.3850	22	26652929	26659253	6	-0.89145	SMALL-LOSS	FOCAL	1	SEZ6L
TCGA.CK.5914.01A	22	26868221	26887378	10	-1.1588	SMALL-LOSS	FOCAL	2	"HPS4,SRRD"
TCGA.AG.3909.01A	22	26868221	26890716	13	-1.0827	SMALL-LOSS	FOCAL	3	"HPS4,SRRD,TFIP11"
TCGA.AA.3850	22	27340509	27361464	17	-0.85825	SMALL-LOSS	FOCAL	0	None
TCGA.A6.6653	22	28093462	28136976	34	-0.7556	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	22	28273287	28275377	3	-0.6921	SMALL-LOSS	FOCAL	1	PITPNB
TCGA.AA.3982	22	28538998	28548966	8	-0.5984	SMALL-LOSS	FOCAL	1	TTC28
TCGA.AA.A00N.01A	22	29025560	29490195	42	-0.6944	SMALL-LOSS	FOCAL	8	"C22orf31,CCDC117,CHEK2,HSCB,KREMEN1,TTC28,XBP1,ZNRF3"
TCGA.AA.3509.01A	22	29091063	29179459	21	-0.6639	SMALL-LOSS	FOCAL	3	"CCDC117,CHEK2,HSCB"
TCGA.CK.5914.01A	22	29141803	29195897	12	-1.2427	SMALL-LOSS	FOCAL	3	"CCDC117,HSCB,XBP1"
TCGA.AG.4009.01A	22	29169639	29194991	8	-1.0139	SMALL-LOSS	FOCAL	2	"CCDC117,XBP1"
TCGA.AG.3909.01A	22	29176938	29457678	20	-1.2503	SMALL-LOSS	FOCAL	4	"C22orf31,CCDC117,XBP1,ZNRF3"
TCGA.CK.5914.01A	22	29196234	29494797	15	-0.526	SMALL-LOSS	FOCAL	4	"C22orf31,KREMEN1,XBP1,ZNRF3"
TCGA.A6.6649	22	29439938	29453026	8	-1.2972	SMALL-LOSS	FOCAL	1	ZNRF3
TCGA.AA.A00N.01A	22	29664265	29709796	24	-1.0252	SMALL-LOSS	FOCAL	3	"EWSR1,GAS2L1,RASL10A"
TCGA.AA.A00N.01A	22	29879326	29885586	5	-0.8929	SMALL-LOSS	FOCAL	1	NEFH
TCGA.AA.A00N.01A	22	29935267	30064275	26	-0.895	SMALL-LOSS	FOCAL	3	"NF2,NIPSNAP1,THOC5"
TCGA.AG.3909.01A	22	29966095	30057142	10	-0.8574	SMALL-LOSS	FOCAL	2	"NF2,NIPSNAP1"
TCGA.AA.A00N.01A	22	30074134	30125394	9	-0.7629	SMALL-LOSS	FOCAL	2	"CABP7,NF2"
TCGA.AA.A00N.01A	22	30218286	30230408	7	-0.9173	SMALL-LOSS	FOCAL	1	ASCC2
TCGA.AG.3909.01A	22	30639618	30824402	55	-0.6864	SMALL-LOSS	FOCAL	9	"CCDC157,GATSL3,LIF,MTFP1,OSM,RNF215,SEC14L2,SF3A1,TBC1D10A"
TCGA.AA.A00N.01A	22	30639618	30845067	69	-0.601	SMALL-LOSS	FOCAL	9	"CCDC157,GATSL3,LIF,MTFP1,OSM,RNF215,SEC14L2,SF3A1,TBC1D10A"
TCGA.AA.A010.01A	22	30762002	30772241	9	-1.314	SMALL-LOSS	FOCAL	1	CCDC157
TCGA.AA.A010.01A	22	30811697	30818224	3	-0.8435	SMALL-LOSS	FOCAL	1	SEC14L2
TCGA.CA.5256	22	30854359	30962159	29	-0.5326	SMALL-LOSS	FOCAL	4	"GAL3ST1,SEC14L3,SEC14L4,SEC14L6"
TCGA.AG.4009.01A	22	30925039	30985137	15	-0.543	SMALL-LOSS	FOCAL	3	"GAL3ST1,PES1,SEC14L6"
TCGA.AA.A00N.01A	22	30925039	31089962	36	-0.5582	SMALL-LOSS	FOCAL	7	"DUSP18,GAL3ST1,OSBP2,PES1,SEC14L6,SLC35E4,TCN2"
TCGA.AA.A010.01A	22	30929908	30953212	5	-0.7898	SMALL-LOSS	FOCAL	2	"GAL3ST1,SEC14L6"
TCGA.AA.A00N.01A	22	31337871	31501837	26	-0.7508	SMALL-LOSS	FOCAL	3	"MORC2,SELM,SMTN"
TCGA.AG.4009.01A	22	31345696	31492709	11	-0.5192	SMALL-LOSS	FOCAL	2	"MORC2,SMTN"
TCGA.AG.3909.01A	22	31346301	31600436	40	-0.5376	SMALL-LOSS	FOCAL	6	"INPP5J,MORC2,PLA2G3,RNF185,SELM,SMTN"
TCGA.AA.A01Q.01A	22	31478856	31492709	8	-0.7303	SMALL-LOSS	FOCAL	1	SMTN
TCGA.AG.4009.01A	22	31583033	31600436	6	-0.5457	SMALL-LOSS	FOCAL	1	RNF185
TCGA.AG.4009.01A	22	31661935	31741081	20	-0.7351	SMALL-LOSS	FOCAL	3	"LIMK2,PATZ1,PIK3IP1"
TCGA.AA.A00N.01A	22	31662912	31816205	25	-0.763	SMALL-LOSS	FOCAL	4	"DRG1,LIMK2,PATZ1,PIK3IP1"
TCGA.AA.A010.01A	22	31858920	32007087	28	-0.6375	SMALL-LOSS	FOCAL	2	"EIF4ENIF1,SFI1"
TCGA.AG.3909.01A	22	31976233	32017608	21	-0.5582	SMALL-LOSS	FOCAL	2	"PISD,SFI1"
TCGA.AA.A02K.01A	22	32002278	32021699	16	-0.8818	SMALL-LOSS	FOCAL	2	"PISD,SFI1"
TCGA.AA.3509.01A	22	32076174	32206478	29	-0.7334	SMALL-LOSS	FOCAL	2	"DEPDC5,PRR14L"
TCGA.AA.3844	22	32110162	32111196	3	-1.1266	SMALL-LOSS	FOCAL	1	PRR14L
TCGA.AA.A00N.01A	22	32121461	32162524	7	-1.3101	SMALL-LOSS	FOCAL	2	"DEPDC5,PRR14L"
TCGA.AA.A00N.01A	22	32293426	32445888	12	-0.56	SMALL-LOSS	FOCAL	4	"C22orf24,DEPDC5,SLC5A1,YWHAH"
TCGA.AG.4009.01A	22	32330064	32352089	4	-0.5654	SMALL-LOSS	FOCAL	2	"C22orf24,YWHAH"
TCGA.CK.5914.01A	22	32330064	32352089	6	-0.9495	SMALL-LOSS	FOCAL	2	"C22orf24,YWHAH"
TCGA.AA.A00N.01A	22	32754029	32766818	6	-0.7314	SMALL-LOSS	FOCAL	1	RFPL3
TCGA.CK.5914.01A	22	32754029	32815283	22	-0.8022	SMALL-LOSS	FOCAL	3	"BPIFC,RFPL3,RTCB"
TCGA.AA.A00N.01A	22	32874917	32891401	7	-1.1535	SMALL-LOSS	FOCAL	1	FBXO7
TCGA.AG.3909.01A	22	32874917	32894161	8	-0.6	SMALL-LOSS	FOCAL	1	FBXO7
TCGA.AA.3850	22	33538507	33541546	4	-1.05785	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4308	22	33823307	33960713	66	-0.8038	SMALL-LOSS	FOCAL	1	LARGE
TCGA.AD.6548	22	34058889	34150240	62	-0.6756	SMALL-LOSS	FOCAL	1	LARGE
TCGA.AA.3844	22	34358638	34395375	13	-0.7161	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3530	22	34423419	34434826	5	-1.1409	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3982	22	34907464	34910169	5	-1.1968	SMALL-LOSS	FOCAL	0	None
TCGA.AG.4009.01A	22	35658300	35661023	5	-0.7019	SMALL-LOSS	FOCAL	1	HMGXB4
TCGA.AA.A00N.01A	22	35658300	35689535	11	-1.1159	SMALL-LOSS	FOCAL	1	HMGXB4
TCGA.AG.3909.01A	22	35658300	35689535	11	-0.9874	SMALL-LOSS	FOCAL	1	HMGXB4
TCGA.AG.A01W.01A	22	35812218	35854083	8	-0.9189	SMALL-LOSS	FOCAL	1	MCM5
TCGA.AG.3909.01A	22	36161402	36177610	4	-0.6356	SMALL-LOSS	FOCAL	1	RBFOX2
TCGA.AA.A01Q.01A	22	36653074	37263383	82	-0.5623	SMALL-LOSS	FOCAL	9	"APOL1,CACNG2,EIF3D,FOXRED2,IFT27,MYH9,NCF4,PVALB,TXN2"
TCGA.AG.3909.01A	22	36657593	37260033	79	-0.6761	SMALL-LOSS	FOCAL	9	"APOL1,CACNG2,EIF3D,FOXRED2,IFT27,MYH9,NCF4,PVALB,TXN2"
TCGA.AA.A00Q.01A	22	36678685	36687982	8	-0.9629	SMALL-LOSS	FOCAL	1	MYH9
TCGA.CK.5914.01A	22	36684824	37211108	72	-0.6321	SMALL-LOSS	FOCAL	7	"CACNG2,EIF3D,FOXRED2,IFT27,MYH9,PVALB,TXN2"
TCGA.AA.A00N.01A	22	36897261	37212923	33	-0.8445	SMALL-LOSS	FOCAL	5	"CACNG2,EIF3D,FOXRED2,IFT27,PVALB"
TCGA.AA.A010.01A	22	37387179	37479022	31	-0.7467	SMALL-LOSS	FOCAL	5	"KCTD17,MPST,TEX33,TMPRSS6,TST"
TCGA.AG.4009.01A	22	37397836	37464601	14	-0.5358	SMALL-LOSS	FOCAL	5	"KCTD17,MPST,TEX33,TMPRSS6,TST"
TCGA.AA.A00N.01A	22	37420986	37479022	22	-0.6821	SMALL-LOSS	FOCAL	3	"KCTD17,MPST,TMPRSS6"
TCGA.AG.A01W.01A	22	37478432	37549047	6	-0.54	SMALL-LOSS	FOCAL	2	"IL2RB,TMPRSS6"
TCGA.AG.A01W.01A	22	37683558	37778478	31	-0.7224	SMALL-LOSS	FOCAL	2	"CYTH4,ELFN2"
TCGA.CK.4952.01A	22	37688367	37717945	8	-1.2668	SMALL-LOSS	FOCAL	1	CYTH4
TCGA.AA.3844	22	37749396	37749945	3	-0.8319	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6923	22	37749396	37749945	3	-1.2658	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	22	38106394	38205915	19	-0.8187	SMALL-LOSS	FOCAL	3	"GCAT,H1F0,TRIOBP"
TCGA.AF.3914.01A	22	38109186	38259219	40	-0.9193	SMALL-LOSS	FOCAL	6	"ANKRD54,EIF3L,GALR3,GCAT,H1F0,TRIOBP"
TCGA.AA.A010.01A	22	38119160	38168571	21	-1.2009	SMALL-LOSS	FOCAL	1	TRIOBP
TCGA.AA.A00N.01A	22	38167604	38259219	27	-1.0334	SMALL-LOSS	FOCAL	6	"ANKRD54,EIF3L,GALR3,GCAT,H1F0,TRIOBP"
TCGA.AG.4009.01A	22	38201522	38247277	17	-1.0225	SMALL-LOSS	FOCAL	5	"ANKRD54,EIF3L,GALR3,GCAT,H1F0"
TCGA.AA.A010.01A	22	38239867	38314994	20	-1.2567	SMALL-LOSS	FOCAL	3	"ANKRD54,EIF3L,MICALL1"
TCGA.AG.4009.01A	22	38373832	38481625	18	-0.5702	SMALL-LOSS	FOCAL	5	"BAIAP2L2,PICK1,POLR2F,SLC16A8,SOX10"
TCGA.AA.A00N.01A	22	38627216	38917596	36	-1.1885	SMALL-LOSS	FOCAL	7	"CSNK1E,DDX17,DMC1,KCNJ4,KDELR3,LOC400927-CSNK1E,TMEM184B"
TCGA.AG.4009.01A	22	38692520	38878423	13	-1.0963	SMALL-LOSS	FOCAL	4	"CSNK1E,KCNJ4,KDELR3,LOC400927-CSNK1E"
TCGA.AG.4009.01A	22	38881972	38897087	11	-0.6103	SMALL-LOSS	FOCAL	1	DDX17
TCGA.AA.A00N.01A	22	38933531	38978299	11	-0.6151	SMALL-LOSS	FOCAL	2	"DMC1,FAM227A"
TCGA.AA.A00N.01A	22	39045984	39112608	15	-1.04	SMALL-LOSS	FOCAL	5	"CBY1,FAM227A,GTPBP1,JOSD1,TOMM22"
TCGA.AA.A010.01A	22	39078280	39136934	25	-0.9343	SMALL-LOSS	FOCAL	4	"GTPBP1,JOSD1,SUN2,TOMM22"
TCGA.CK.5914.01A	22	39078834	39104813	7	-1.1895	SMALL-LOSS	FOCAL	3	"GTPBP1,JOSD1,TOMM22"
TCGA.AG.4009.01A	22	39083856	39112608	6	-0.7327	SMALL-LOSS	FOCAL	2	"GTPBP1,JOSD1"
TCGA.AG.4009.01A	22	39141640	39267431	15	-0.7845	SMALL-LOSS	FOCAL	4	"CBX6,DNAL4,NPTXR,SUN2"
TCGA.AG.3611.01A	22	39378370	39387999	6	-0.5162	SMALL-LOSS	FOCAL	2	"APOBEC3A_B,APOBEC3B"
TCGA.AA.A00N.01A	22	39483342	39710060	23	-0.6969	SMALL-LOSS	FOCAL	5	"APOBEC3G,APOBEC3H,CBX7,PDGFB,RPL3"
TCGA.AA.A010.01A	22	39745969	39772937	5	-1.0859	SMALL-LOSS	FOCAL	1	SYNGR1
TCGA.AA.A010.01A	22	39832445	40045454	23	-0.7975	SMALL-LOSS	FOCAL	6	"ATF4,CACNA1I,MGAT3,MIEF1,RPS19BP1,TAB1"
TCGA.AG.4009.01A	22	39883345	39925450	8	-0.8346	SMALL-LOSS	FOCAL	4	"ATF4,MGAT3,MIEF1,RPS19BP1"
TCGA.AA.A00N.01A	22	39883345	40080275	48	-0.7816	SMALL-LOSS	FOCAL	5	"ATF4,CACNA1I,MGAT3,MIEF1,RPS19BP1"
TCGA.AG.A01W.01A	22	39976921	40081413	27	-0.5319	SMALL-LOSS	FOCAL	1	CACNA1I
TCGA.AF.3914.01A	22	40054118	40078474	22	-1.2202	SMALL-LOSS	FOCAL	1	CACNA1I
TCGA.AG.4009.01A	22	40054118	40080275	17	-0.9818	SMALL-LOSS	FOCAL	1	CACNA1I
TCGA.AA.A010.01A	22	40081729	40425448	19	-0.6033	SMALL-LOSS	FOCAL	4	"CACNA1I,ENTHD1,FAM83F,GRAP2"
TCGA.CK.5914.01A	22	40745835	40763446	12	-1.0886	SMALL-LOSS	FOCAL	1	ADSL
TCGA.AG.3906.01A	22	40800209	40813313	12	-0.5519	SMALL-LOSS	FOCAL	2	"MKL1,SGSM3"
TCGA.AA.A00N.01A	22	41166800	41265995	28	-0.8872	SMALL-LOSS	FOCAL	4	"DNAJB7,SLC25A17,ST13,XPNPEP3"
TCGA.AG.3909.01A	22	41174976	41257619	20	-0.9267	SMALL-LOSS	FOCAL	4	"DNAJB7,SLC25A17,ST13,XPNPEP3"
TCGA.AA.A010.01A	22	41601282	41631127	18	-1.1134	SMALL-LOSS	FOCAL	2	"CHADL,L3MBTL2"
TCGA.AG.4009.01A	22	41601282	41646960	18	-0.6456	SMALL-LOSS	FOCAL	3	"CHADL,L3MBTL2,RANGAP1"
TCGA.AA.A00N.01A	22	41747511	41864060	15	-0.6353	SMALL-LOSS	FOCAL	4	"PHF5A,TEF,TOB2,ZC3H7B"
TCGA.AG.3909.01A	22	41747511	41864060	13	-0.8286	SMALL-LOSS	FOCAL	4	"PHF5A,TEF,TOB2,ZC3H7B"
TCGA.AA.A01Q.01A	22	41907826	41939763	21	-0.7266	SMALL-LOSS	FOCAL	2	"ACO2,POLR3H"
TCGA.AA.A00N.01A	22	41999214	42101447	29	-1.0931	SMALL-LOSS	FOCAL	5	"C22orf46,DESI1,MEI1,NHP2L1,XRCC6"
TCGA.AG.3909.01A	22	41999214	42101447	26	-0.8881	SMALL-LOSS	FOCAL	5	"C22orf46,DESI1,MEI1,NHP2L1,XRCC6"
TCGA.AG.A01W.01A	22	42200554	42282056	9	-1.1076	SMALL-LOSS	FOCAL	2	"CCDC134,SREBF2"
TCGA.A6.6653	22	42317110	42340843	4	-1.2726	SMALL-LOSS	FOCAL	2	"CENPM,TNFRSF13C"
TCGA.AA.A010.01A	22	42322068	42372987	9	-0.9148	SMALL-LOSS	FOCAL	3	"CENPM,SEPT3,TNFRSF13C"
TCGA.AG.3909.01A	22	42341874	42392837	11	-0.5994	SMALL-LOSS	FOCAL	2	"CENPM,SEPT3"
TCGA.DM.A1D7	22	42356277	42367836	6	-1.2613	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5539	22	42379812	42932316	122	-1.0799	SMALL-LOSS	FOCAL	10	"CYP2D6,FAM109B,NAGA,NDUFA6,NFAM1,RRP7A,SEPT3,SMDT1,TCF20,WBP2NL"
TCGA.AG.3909.01A	22	42463729	42475746	6	-0.6929	SMALL-LOSS	FOCAL	3	"FAM109B,NAGA,SMDT1"
TCGA.AA.A01Q.01A	22	42781100	43193511	41	-0.6151	SMALL-LOSS	FOCAL	8	"A4GALT,ARFGAP3,ATP5L2,CYB5R3,NFAM1,POLDIP3,RRP7A,SERHL2"
TCGA.AA.A00N.01A	22	42897581	42998909	32	-1.1264	SMALL-LOSS	FOCAL	3	"POLDIP3,RRP7A,SERHL2"
TCGA.AA.A010.01A	22	42981745	43032714	19	-0.706	SMALL-LOSS	FOCAL	2	"CYB5R3,POLDIP3"
TCGA.AA.A010.01A	22	43213116	43253058	11	-0.9488	SMALL-LOSS	FOCAL	1	ARFGAP3
TCGA.CK.5914.01A	22	43243468	43687015	67	-0.6049	SMALL-LOSS	FOCAL	8	"ARFGAP3,BIK,MCAT,PACSIN2,SCUBE1,TSPO,TTLL1,TTLL12"
TCGA.AA.A01Q.01A	22	43442415	43576710	29	-0.661	SMALL-LOSS	FOCAL	5	"BIK,MCAT,TSPO,TTLL1,TTLL12"
TCGA.AA.A010.01A	22	43563100	43606012	16	-0.6354	SMALL-LOSS	FOCAL	2	"SCUBE1,TTLL12"
TCGA.AA.A01Q.01A	22	43654223	43687015	3	-1.0037	SMALL-LOSS	FOCAL	1	SCUBE1
TCGA.AA.A010.01A	22	43735082	43830912	3	-1.0399	SMALL-LOSS	FOCAL	2	"MPPED1,SCUBE1"
TCGA.AG.3909.01A	22	44161143	44377225	34	-0.6974	SMALL-LOSS	FOCAL	5	"EFCAB6,PNPLA3,PNPLA5,SAMM50,SULT4A1"
TCGA.AA.A010.01A	22	44178008	44285614	16	-0.8589	SMALL-LOSS	FOCAL	3	"EFCAB6,PNPLA5,SULT4A1"
TCGA.AA.A010.01A	22	45404362	45691399	26	-0.6361	SMALL-LOSS	FOCAL	4	"KIAA0930,NUP50,PHF21B,UPK3A"
TCGA.AA.3861.01A	22	45595726	45804569	47	-0.5618	SMALL-LOSS	FOCAL	4	"FAM118A,KIAA0930,SMC1B,UPK3A"
TCGA.CK.5914.01A	22	45789464	46098562	41	-0.5534	SMALL-LOSS	FOCAL	4	"ATXN10,FBLN1,RIBC2,SMC1B"
TCGA.AA.A00N.01A	22	45792199	45898067	14	-1.12	SMALL-LOSS	FOCAL	2	"RIBC2,SMC1B"
TCGA.AG.4009.01A	22	45804569	45826749	5	-1.0265	SMALL-LOSS	FOCAL	2	"RIBC2,SMC1B"
TCGA.AA.A010.01A	22	45828142	45927088	8	-0.9122	SMALL-LOSS	FOCAL	2	"FBLN1,RIBC2"
TCGA.AA.A00N.01A	22	46238834	46630979	25	-0.606	SMALL-LOSS	FOCAL	4	"ATXN10,PPARA,PRR34,WNT7B"
TCGA.CK.5914.01A	22	46323340	46630979	21	-0.5611	SMALL-LOSS	FOCAL	3	"PPARA,PRR34,WNT7B"
TCGA.AA.A00N.01A	22	46640951	46749617	43	-1.1918	SMALL-LOSS	FOCAL	5	"CDPF1,GTSE1,PKDREJ,TRMU,TTC38"
TCGA.CK.5914.01A	22	46640951	46749617	42	-1.0962	SMALL-LOSS	FOCAL	5	"CDPF1,GTSE1,PKDREJ,TRMU,TTC38"
TCGA.AG.4009.01A	22	46644042	46674449	11	-0.842	SMALL-LOSS	FOCAL	3	"CDPF1,PKDREJ,TTC38"
TCGA.AG.3909.01A	22	47071311	47188348	14	-1.2172	SMALL-LOSS	FOCAL	3	"CERK,GRAMD4,TBC1D22A"
TCGA.AH.6897	22	47804242	47813877	3	-0.9554	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3495	22	48076688	48516694	265	-0.5582	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	22	48378736	48384949	4	-0.7714	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3667	22	48832792	48837426	8	-0.9443	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3684	22	48834198	48842453	14	-0.5912	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3594	22	48940914	48965105	11	-0.7538	SMALL-LOSS	FOCAL	1	FAM19A5
TCGA.AD.6890	22	49537844	49541238	4	-1.0798	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3693	22	49856120	49866136	3	-1.2666	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	22	50277284	50317954	17	-0.6322	SMALL-LOSS	FOCAL	3	"ALG12,CRELD2,ZBED4"
TCGA.AA.A010.01A	22	50319034	50484258	23	-1.2236	SMALL-LOSS	FOCAL	3	"CRELD2,IL17REL,PIM3"
TCGA.A6.3808.01A	22	50437651	50684677	96	-0.6863	SMALL-LOSS	FOCAL	8	"HDAC10,IL17REL,MLC1,MOV10L1,PANX2,SELO,TRABD,TUBGCP6"
TCGA.AA.A010.01A	22	50546513	50552030	3	-1.2991	SMALL-LOSS	FOCAL	1	MOV10L1
TCGA.AA.3509.01A	22	50552030	50580469	11	-0.8977	SMALL-LOSS	FOCAL	1	MOV10L1
TCGA.AA.A010.01A	22	50552793	50566793	7	-0.5889	SMALL-LOSS	FOCAL	1	MOV10L1
TCGA.AA.A010.01A	22	50572375	50585483	7	-1.2776	SMALL-LOSS	FOCAL	1	MOV10L1
TCGA.AF.3914.01A	22	50694477	50757199	28	-0.9079	SMALL-LOSS	FOCAL	4	"DENND6B,MAPK11,MAPK12,PLXNB2"
TCGA.A6.3810.01A	22	50705401	50726058	20	-0.8444	SMALL-LOSS	FOCAL	2	"MAPK11,PLXNB2"
TCGA.AZ.4308	22	50814074	50959607	25	-0.7751	SMALL-LOSS	FOCAL	6	"ADM2,LMF2,MIOX,NCAPH2,PPP6R2,SBF1"
TCGA.AA.A01Q.01A	22	50873358	50882263	9	-0.9722	SMALL-LOSS	FOCAL	1	PPP6R2
TCGA.AA.A010.01A	22	50892914	50898361	5	-1.0089	SMALL-LOSS	FOCAL	1	SBF1
TCGA.AG.4009.01A	22	50942718	51040180	33	-1.0869	SMALL-LOSS	FOCAL	10	"CHKB,CPT1B,KLHDC7B,LMF2,MAPK8IP2,NCAPH2,ODF3B,SCO2,SYCE3,TYMP"
TCGA.AA.A010.01A	22	51063552	51065976	5	-1.2777	SMALL-LOSS	FOCAL	1	ARSA
TCGA.AG.A015.01A	22	51207154	51220568	8	-0.8672	SMALL-LOSS	FOCAL	1	RABL2B
TCGA.AA.A00N.01A	23	200803	1314835	29	-0.5448	SMALL-LOSS	FOCAL	4	"GTPBP6,PLCXD1,PPP2R3B,SHOX"
TCGA.AZ.4684.01A	23	200803	1401538	35	-0.5575	SMALL-LOSS	FOCAL	6	"CRLF2,CSF2RA,GTPBP6,PLCXD1,PPP2R3B,SHOX"
TCGA.AA.3930.01A	23	224352	322089	12	-0.9027	SMALL-LOSS	FOCAL	2	"GTPBP6,PPP2R3B"
TCGA.A6.3810.01A	23	295053	1505473	45	-0.7284	SMALL-LOSS	FOCAL	6	"CRLF2,CSF2RA,IL3RA,PPP2R3B,SHOX,SLC25A6"
TCGA.AZ.4684.01A	23	1404639	1505473	20	-1.0625	SMALL-LOSS	FOCAL	3	"CSF2RA,IL3RA,SLC25A6"
TCGA.AA.A00N.01A	23	1464162	1734040	33	-0.6465	SMALL-LOSS	FOCAL	6	"AKAP17A,ASMT,ASMTL,IL3RA,P2RY8,SLC25A6"
TCGA.AA.3930.01A	23	1470961	1510741	11	-0.6976	SMALL-LOSS	FOCAL	2	"IL3RA,SLC25A6"
TCGA.AA.A010.01A	23	1506155	1544368	9	-1.1367	SMALL-LOSS	FOCAL	2	"ASMTL,SLC25A6"
TCGA.AZ.4684.01A	23	1506155	2724664	60	-0.6631	SMALL-LOSS	FOCAL	9	"AKAP17A,ASMT,ASMTL,CD99,DHRSX,P2RY8,SLC25A6,XG,ZBED1"
TCGA.AG.A02G.01A	23	1712325	2692667	34	-0.5576	SMALL-LOSS	FOCAL	6	"AKAP17A,ASMT,CD99,DHRSX,XG,ZBED1"
TCGA.DY.A1H8	23	2703632	3695257	399	-0.8707	SMALL-LOSS	FOCAL	8	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,PRKX,XG"
TCGA.AA.A01S	23	2703632	4596588	719	-0.96265	SMALL-LOSS	FOCAL	8	"ARSD,ARSE,ARSF,ARSH,GYG2,MXRA5,PRKX,XG"
TCGA.AA.3660	23	2775875	2775997	3	-1.0318	SMALL-LOSS	FOCAL	1	GYG2
TCGA.AG.3909.01A	23	2825285	2871145	17	-0.6259	SMALL-LOSS	FOCAL	2	"ARSD,ARSE"
TCGA.AA.A00N.01A	23	2828671	2871145	14	-0.8869	SMALL-LOSS	FOCAL	2	"ARSD,ARSE"
TCGA.AG.3909.01A	23	3227720	3261676	6	-1.0379	SMALL-LOSS	FOCAL	1	MXRA5
TCGA.AA.3968	23	3295053	3296069	3	-0.9996	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3866	23	3969878	4885452	406	-0.5402	SMALL-LOSS	FOCAL	0	None
TCGA.D5.5538	23	4002536	4002893	3	-0.9589	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	23	4122611	4130296	7	-1.0667	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	23	4217033	4224448	10	-1.2923	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3866	23	5964743	6387494	174	-0.5409	SMALL-LOSS	FOCAL	1	NLGN4X
TCGA.AD.6965	23	6575237	7278176	237	-0.5411	SMALL-LOSS	FOCAL	2	"HDHD1,STS"
TCGA.AA.3666	23	6866337	7442366	184	-0.8467	SMALL-LOSS	FOCAL	2	"HDHD1,STS"
TCGA.AA.3693	23	6930693	6979858	22	-0.8237	SMALL-LOSS	FOCAL	1	HDHD1
TCGA.AY.A69D	23	6974671	7003706	25	-1.1273	SMALL-LOSS	FOCAL	1	HDHD1
TCGA.EI.6508	23	7057676	7325696	70	-0.76	SMALL-LOSS	FOCAL	2	"HDHD1,STS"
TCGA.AM.5821	23	7103282	7351394	61	-1.24	SMALL-LOSS	FOCAL	1	STS
TCGA.A6.2681	23	7204035	7342783	33	-0.7678	SMALL-LOSS	FOCAL	1	STS
TCGA.AA.3489	23	7215335	7533099	84	-0.8977	SMALL-LOSS	FOCAL	1	STS
TCGA.AZ.4308	23	7307883	7561104	88	-1.0216	SMALL-LOSS	FOCAL	0	None
TCGA.AM.5821	23	7354081	7906048	196	-0.5256	SMALL-LOSS	FOCAL	2	"PNPLA4,VCX"
TCGA.AA.3529	23	7450306	7484728	14	-1.3011	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6460	23	7486366	7912018	158	-0.7189	SMALL-LOSS	FOCAL	2	"PNPLA4,VCX"
TCGA.AG.3592	23	7559490	7822232	71	-0.8642	SMALL-LOSS	FOCAL	1	VCX
TCGA.AF.A56L	23	7561262	7745630	50	-0.6156	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3529	23	7561866	7702229	30	-0.9729	SMALL-LOSS	FOCAL	0	None
TCGA.A6.2683	23	7875445	7894782	13	-0.5243	SMALL-LOSS	FOCAL	1	PNPLA4
TCGA.AG.3909.01A	23	7880004	8094965	5	-0.6345	SMALL-LOSS	FOCAL	1	PNPLA4
TCGA.AA.A00N.01A	23	7880004	8434359	7	-0.9904	SMALL-LOSS	FOCAL	3	"PNPLA4,VCX2,VCX3B"
TCGA.EI.6508	23	7993640	8101775	37	-0.8149	SMALL-LOSS	FOCAL	0	None
TCGA.CK.5914.01A	23	8759289	9000110	12	-0.622	SMALL-LOSS	FOCAL	2	"FAM9A,FAM9B"
TCGA.AG.3909.01A	23	8759289	9665343	20	-0.9307	SMALL-LOSS	FOCAL	3	"FAM9A,FAM9B,TBL1X"
TCGA.AA.3930.01A	23	8761648	8768069	6	-0.9659	SMALL-LOSS	FOCAL	1	FAM9A
TCGA.AA.A01S	23	9072716	9469729	156	-0.95305	SMALL-LOSS	FOCAL	1	TBL1X
TCGA.AG.A026	23	9578744	10202747	285	-0.5248	SMALL-LOSS	FOCAL	6	"CLCN4,CLDN34,GPR143,SHROOM2,TBL1X,WWC3"
TCGA.AG.3909.01A	23	10077766	10109408	15	-1.2988	SMALL-LOSS	FOCAL	1	WWC3
TCGA.AA.A00N.01A	23	10084402	10109408	14	-0.835	SMALL-LOSS	FOCAL	1	WWC3
TCGA.DM.A1D9	23	10580787	10826353	46	-0.7353	SMALL-LOSS	FOCAL	1	MID1
TCGA.CK.5914.01A	23	11130144	11160317	8	-0.554	SMALL-LOSS	FOCAL	2	"ARHGAP6,HCCS"
TCGA.AA.A00N.01A	23	11130144	11174598	10	-0.6348	SMALL-LOSS	FOCAL	2	"ARHGAP6,HCCS"
TCGA.AA.A01Q.01A	23	11777882	11781852	7	-0.6456	SMALL-LOSS	FOCAL	1	MSL3
TCGA.AG.3909.01A	23	11777882	11781852	7	-0.7721	SMALL-LOSS	FOCAL	1	MSL3
TCGA.AA.A00N.01A	23	11783604	11793082	5	-0.7623	SMALL-LOSS	FOCAL	1	MSL3
TCGA.AF.A56L	23	11975721	12098443	51	-0.6242	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	23	12994330	13060981	6	-1.3177	SMALL-LOSS	FOCAL	2	"FAM9C,TMSB4X"
TCGA.AA.A00N.01A	23	12994330	13762483	33	-0.6948	SMALL-LOSS	FOCAL	8	"ATXN3L,EGFL6,FAM9C,OFD1,RAB9A,TCEANC,TMSB4X,TRAPPC2"
TCGA.CK.5914.01A	23	13056513	13060981	4	-0.7084	SMALL-LOSS	FOCAL	1	FAM9C
TCGA.AG.3909.01A	23	13061791	13767499	30	-0.5637	SMALL-LOSS	FOCAL	7	"ATXN3L,EGFL6,FAM9C,OFD1,RAB9A,TCEANC,TRAPPC2"
TCGA.CK.5914.01A	23	13624449	13681963	9	-0.6717	SMALL-LOSS	FOCAL	2	"EGFL6,TCEANC"
TCGA.AG.3909.01A	23	14875944	14891559	4	-0.8969	SMALL-LOSS	FOCAL	2	"FANCB,MOSPD2"
TCGA.AG.3909.01A	23	15339589	15373267	9	-0.9097	SMALL-LOSS	FOCAL	2	"FIGF,PIGA"
TCGA.AA.A01S	23	15448058	15902428	131	-0.90695	SMALL-LOSS	FOCAL	7	"ACE2,AP1S2,BMX,CA5B,PIR,TMEM27,ZRSR2"
TCGA.AA.A010.01A	23	15526445	15609834	33	-0.9317	SMALL-LOSS	FOCAL	2	"ACE2,BMX"
TCGA.AG.3909.01A	23	15646052	15711036	8	-0.8509	SMALL-LOSS	FOCAL	1	TMEM27
TCGA.AA.A00N.01A	23	15657648	15706854	6	-0.6057	SMALL-LOSS	FOCAL	1	TMEM27
TCGA.AG.4009.01A	23	15821764	15870430	12	-0.5744	SMALL-LOSS	FOCAL	2	"AP1S2,ZRSR2"
TCGA.AG.3909.01A	23	15826276	15870430	10	-1.224	SMALL-LOSS	FOCAL	2	"AP1S2,ZRSR2"
TCGA.DC.4745	23	16149488	16534987	111	-0.8588	SMALL-LOSS	FOCAL	2	"GRPR,MAGEB17"
TCGA.AA.A00N.01A	23	16867299	16887150	9	-1.1998	SMALL-LOSS	FOCAL	1	RBBP7
TCGA.AA.3930.01A	23	17749948	17771330	8	-0.6702	SMALL-LOSS	FOCAL	2	"NHS,SCML1"
TCGA.A6.2678	23	17922973	18035129	12	-0.8297	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	19001914	19022845	8	-0.8047	SMALL-LOSS	FOCAL	2	"ADGRG2,PHKA2"
TCGA.AA.A00N.01A	23	19363804	19380804	13	-0.8947	SMALL-LOSS	FOCAL	2	"MAP3K15,PDHA1"
TCGA.AG.3909.01A	23	19363804	19380804	13	-0.6783	SMALL-LOSS	FOCAL	2	"MAP3K15,PDHA1"
TCGA.A6.6142	23	19453569	19501972	22	-0.6561	SMALL-LOSS	FOCAL	1	MAP3K15
TCGA.CM.6170	23	19486423	19504129	7	-0.7853	SMALL-LOSS	FOCAL	1	MAP3K15
TCGA.AA.A01S	23	19917186	21854788	284	-1.04395	SMALL-LOSS	FOCAL	7	"CNKSR2,CXorf23,EIF1AX,KLHL34,MAP7D2,RPS6KA3,SMPX"
TCGA.AG.3909.01A	23	19935338	19988265	12	-0.5849	SMALL-LOSS	FOCAL	1	CXorf23
TCGA.AA.A010.01A	23	19935338	21670433	80	-1.2256	SMALL-LOSS	FOCAL	5	"CNKSR2,CXorf23,EIF1AX,MAP7D2,RPS6KA3"
TCGA.CK.5914.01A	23	20146328	20156612	6	-0.7577	SMALL-LOSS	FOCAL	1	EIF1AX
TCGA.AA.A00N.01A	23	21659554	21876504	16	-0.6099	SMALL-LOSS	FOCAL	5	"CNKSR2,KLHL34,MBTPS2,SMPX,YY2"
TCGA.AG.3909.01A	23	21666927	21887607	14	-0.6764	SMALL-LOSS	FOCAL	5	"CNKSR2,KLHL34,MBTPS2,SMPX,YY2"
TCGA.CK.5914.01A	23	21861241	21876504	8	-0.998	SMALL-LOSS	FOCAL	2	"MBTPS2,YY2"
TCGA.AA.3848	23	23333837	23336071	3	-0.7459	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	23	24073687	24091181	9	-0.8972	SMALL-LOSS	FOCAL	1	EIF2S3
TCGA.AZ.4684.01A	23	24078156	24094773	8	-0.8216	SMALL-LOSS	FOCAL	1	EIF2S3
TCGA.AA.A00N.01A	23	24086034	24190792	5	-0.6195	SMALL-LOSS	FOCAL	2	"EIF2S3,ZFX"
TCGA.AG.3909.01A	23	24328949	24331388	3	-1.2215	SMALL-LOSS	FOCAL	1	SUPT20HL2
TCGA.CK.5914.01A	23	24717525	24766947	25	-0.6702	SMALL-LOSS	FOCAL	1	POLA1
TCGA.AG.3909.01A	23	24734947	24755695	12	-0.8829	SMALL-LOSS	FOCAL	1	POLA1
TCGA.AA.3850	23	25552601	28819991	895	-0.72545	SMALL-LOSS	FOCAL	7	"DCAF8L1,DCAF8L2,IL1RAPL1,MAGEB10,MAGEB18,MAGEB5,MAGEB6"
TCGA.AG.4021	23	29083756	31135219	606	-0.7555	SMALL-LOSS	FOCAL	10	"CXorf21,FTHL17,GK,IL1RAPL1,MAGEB1,MAGEB2,MAGEB3,MAGEB4,NR0B1,TAB3"
TCGA.AG.3909.01A	23	30322644	30686088	8	-0.7357	SMALL-LOSS	FOCAL	3	"CXorf21,GK,NR0B1"
TCGA.A6.6654	23	30799257	33290893	970	-0.5956	SMALL-LOSS	FOCAL	3	"DMD,FTHL17,TAB3"
TCGA.AA.A03J	23	34049396	34070286	12	-0.6784	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A010.01A	23	36103402	37670022	51	-1.0475	SMALL-LOSS	FOCAL	7	"CFAP47,CYBB,FAM47C,FTH1P18,LANCL3,PRRG1,XK"
TCGA.AA.A00N.01A	23	37526508	37586952	6	-1.1638	SMALL-LOSS	FOCAL	2	"LANCL3,XK"
TCGA.AG.3909.01A	23	37699768	37705492	4	-0.9923	SMALL-LOSS	FOCAL	1	DYNLT3
TCGA.AM.5820	23	37750331	38142282	152	-0.6053	SMALL-LOSS	FOCAL	4	"HYPM,RPGR,SRPX,SYTL5"
TCGA.5M.AAT5	23	37776706	37789023	3	-1.1306	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3667	23	37920274	37920961	3	-1.1419	SMALL-LOSS	FOCAL	1	SYTL5
TCGA.AA.3930.01A	23	38134317	38145770	4	-0.7585	SMALL-LOSS	FOCAL	1	RPGR
TCGA.AA.A010.01A	23	38144772	40547648	78	-0.9936	SMALL-LOSS	FOCAL	9	"ATP6AP2,BCOR,CXorf38,MED14,MID1IP1,MPC1L,OTC,RPGR,TSPAN7"
TCGA.AG.A015.01A	23	38147087	38182076	12	-0.5992	SMALL-LOSS	FOCAL	1	RPGR
TCGA.AG.3909.01A	23	38176521	38182624	5	-1.1801	SMALL-LOSS	FOCAL	1	RPGR
TCGA.AG.3909.01A	23	38664221	40518432	33	-0.801	SMALL-LOSS	FOCAL	6	"ATP6AP2,BCOR,CXorf38,MED14,MID1IP1,MPC1L"
TCGA.AA.A01S	23	38984256	40973476	523	-0.94655	SMALL-LOSS	FOCAL	7	"ATP6AP2,BCOR,CXorf38,MED14,MED14OS,MPC1L,USP9X"
TCGA.AA.3667	23	39232008	39233407	5	-0.6163	SMALL-LOSS	FOCAL	0	None
TCGA.DY.A1DD	23	39705175	40394527	164	-0.9695	SMALL-LOSS	FOCAL	1	BCOR
TCGA.AA.A01Q.01A	23	39911330	39935645	13	-0.6896	SMALL-LOSS	FOCAL	1	BCOR
TCGA.AA.A00N.01A	23	39930195	40518432	25	-1.2444	SMALL-LOSS	FOCAL	5	"ATP6AP2,BCOR,CXorf38,MED14,MPC1L"
TCGA.AA.A00N.01A	23	41055456	41206831	31	-1.051	SMALL-LOSS	FOCAL	2	"DDX3X,USP9X"
TCGA.AG.3909.01A	23	41056590	41083958	13	-1.0176	SMALL-LOSS	FOCAL	1	USP9X
TCGA.AG.3909.01A	23	41196588	41206831	12	-0.9773	SMALL-LOSS	FOCAL	1	DDX3X
TCGA.A6.3808.01A	23	41307064	41604724	28	-0.5325	SMALL-LOSS	FOCAL	4	"CASK,GPR34,GPR82,NYX"
TCGA.AA.A00N.01A	23	41469105	41530659	7	-1.071	SMALL-LOSS	FOCAL	1	CASK
TCGA.AA.3850	23	41840783	44131696	520	-0.56005	SMALL-LOSS	FOCAL	4	"EFHC2,MAOA,MAOB,NDP"
TCGA.AG.3909.01A	23	44833869	44918481	9	-0.6937	SMALL-LOSS	FOCAL	1	KDM6A
TCGA.AA.A00N.01A	23	44870144	44921845	12	-0.8054	SMALL-LOSS	FOCAL	1	KDM6A
TCGA.AG.3909.01A	23	45010858	46309814	8	-0.5902	SMALL-LOSS	FOCAL	2	"CXorf36,KRBOX4"
TCGA.AG.A01W.01A	23	46886614	46888830	3	-0.5976	SMALL-LOSS	FOCAL	1	JADE3
TCGA.AA.A00N.01A	23	46915437	47035841	16	-0.6536	SMALL-LOSS	FOCAL	4	"JADE3,NDUFB11,RBM10,RGN"
TCGA.AG.3909.01A	23	46940496	47035841	14	-1.043	SMALL-LOSS	FOCAL	3	"NDUFB11,RBM10,RGN"
TCGA.CK.5914.01A	23	47032463	47085121	31	-0.6183	SMALL-LOSS	FOCAL	3	"CDK16,RBM10,UBA1"
TCGA.AA.A010.01A	23	47057552	47087908	26	-1.0956	SMALL-LOSS	FOCAL	2	"CDK16,UBA1"
TCGA.AA.A00N.01A	23	47062888	47101811	27	-0.7202	SMALL-LOSS	FOCAL	3	"CDK16,UBA1,USP11"
TCGA.AG.3909.01A	23	47072119	47106956	23	-1.2177	SMALL-LOSS	FOCAL	3	"CDK16,UBA1,USP11"
TCGA.AG.A01W.01A	23	47327708	47351233	7	-0.5421	SMALL-LOSS	FOCAL	1	ZNF41
TCGA.AG.3909.01A	23	47342972	47662656	42	-0.5993	SMALL-LOSS	FOCAL	6	"ARAF,CFP,ELK1,SYN1,TIMP1,UXT"
TCGA.AA.3941	23	47753027	47758233	6	-0.8675	SMALL-LOSS	FOCAL	1	ZNF81
TCGA.AA.A017.01A	23	47969596	48049522	7	-1.2942	SMALL-LOSS	FOCAL	3	"SPACA5,SPACA5B,SSX5"
TCGA.AG.3909.01A	23	47969889	47990601	5	-1.3077	SMALL-LOSS	FOCAL	2	"SPACA5,SPACA5B"
TCGA.AG.4009.01A	23	47976386	47990601	3	-0.9061	SMALL-LOSS	FOCAL	2	"SPACA5,SPACA5B"
TCGA.AG.A01W.01A	23	48128991	48203943	7	-0.9712	SMALL-LOSS	FOCAL	0	None
TCGA.CK.4948.01B	23	48243431	48270714	6	-0.5543	SMALL-LOSS	FOCAL	2	"SSX4,SSX4B"
TCGA.AA.A010.01A	23	48341309	48386575	12	-0.8248	SMALL-LOSS	FOCAL	3	"EBP,FTSJ1,PORCN"
TCGA.AA.A00N.01A	23	48341309	48403209	15	-0.9058	SMALL-LOSS	FOCAL	4	"EBP,FTSJ1,PORCN,TBC1D25"
TCGA.AG.A01L.01A	23	48370684	48374057	3	-1.0974	SMALL-LOSS	FOCAL	1	PORCN
TCGA.AG.A01W.01A	23	48427136	48434369	9	-0.7101	SMALL-LOSS	FOCAL	1	RBM3
TCGA.AG.A015.01A	23	48463189	48547659	9	-0.5866	SMALL-LOSS	FOCAL	2	"WAS,WDR13"
TCGA.AA.A017.01A	23	48542191	48549424	9	-1.0522	SMALL-LOSS	FOCAL	1	WAS
TCGA.AA.A010.01A	23	48661069	48687967	16	-1.2823	SMALL-LOSS	FOCAL	2	"ERAS,HDAC6"
TCGA.A6.3808.01A	23	48687967	48832643	37	-0.6333	SMALL-LOSS	FOCAL	9	"ERAS,GRIPAP1,KCND1,OTUD5,PCSK1N,PIM2,PQBP1,SLC35A2,TIMM17B"
TCGA.AA.A00N.01A	23	48888865	48935066	22	-0.5584	SMALL-LOSS	FOCAL	4	"CCDC120,PRAF2,TFE3,WDR45"
TCGA.AG.3909.01A	23	48897935	48935066	15	-1.2204	SMALL-LOSS	FOCAL	4	"CCDC120,PRAF2,TFE3,WDR45"
TCGA.AG.A01W.01A	23	48956041	48964363	11	-0.7922	SMALL-LOSS	FOCAL	1	WDR45
TCGA.AA.A00N.01A	23	49019139	49089638	62	-0.653	SMALL-LOSS	FOCAL	5	"CACNA1F,MAGIX,PLP2,PRICKLE3,SYP"
TCGA.AG.3909.01A	23	49020994	49050576	19	-1.2093	SMALL-LOSS	FOCAL	4	"MAGIX,PLP2,PRICKLE3,SYP"
TCGA.AF.3914.01A	23	49022373	49035945	11	-1.0582	SMALL-LOSS	FOCAL	3	"MAGIX,PLP2,PRICKLE3"
TCGA.AA.A01Q.01A	23	49028337	49070572	37	-0.6758	SMALL-LOSS	FOCAL	4	"CACNA1F,PLP2,PRICKLE3,SYP"
TCGA.AA.A010.01A	23	49032545	49104644	59	-1.0895	SMALL-LOSS	FOCAL	4	"CACNA1F,CCDC22,PRICKLE3,SYP"
TCGA.A6.3808.01A	23	49049719	49075280	27	-0.8151	SMALL-LOSS	FOCAL	2	"CACNA1F,SYP"
TCGA.AG.A015.01A	23	49070572	49081204	12	-0.6109	SMALL-LOSS	FOCAL	1	CACNA1F
TCGA.AA.3850	23	49466422	50786031	266	-0.55165	SMALL-LOSS	FOCAL	8	"AKAP4,BMP15,CCNB3,CLCN5,DGKK,PAGE4,SHROOM4,USP27X"
TCGA.AG.3909.01A	23	51075787	51643228	18	-0.5246	SMALL-LOSS	FOCAL	5	"CXorf67,GSPT2,MAGED1,NUDT10,NUDT11"
TCGA.AA.3930.01A	23	51637322	51644637	12	-0.5786	SMALL-LOSS	FOCAL	1	MAGED1
TCGA.AA.A01S	23	51849210	52069921	27	-0.97625	SMALL-LOSS	FOCAL	2	"MAGED4,MAGED4B"
TCGA.AA.3930.01A	23	53105773	53116931	10	-0.7208	SMALL-LOSS	FOCAL	2	"GPR173,TSPYL2"
TCGA.CK.5914.01A	23	53107296	53116931	9	-0.8235	SMALL-LOSS	FOCAL	2	"GPR173,TSPYL2"
TCGA.AG.3909.01A	23	53221882	53230684	10	-0.6849	SMALL-LOSS	FOCAL	1	KDM5C
TCGA.AG.A015.01A	23	53239569	53265477	9	-0.6802	SMALL-LOSS	FOCAL	2	"IQSEC2,KDM5C"
TCGA.AG.3909.01A	23	53267298	53284945	10	-1.1928	SMALL-LOSS	FOCAL	1	IQSEC2
TCGA.AA.A01Q.01A	23	53268330	53283732	8	-0.5451	SMALL-LOSS	FOCAL	1	IQSEC2
TCGA.AG.A015.01A	23	53430499	53449394	10	-0.5437	SMALL-LOSS	FOCAL	1	SMC1A
TCGA.AG.A01W.01A	23	53452671	53466130	6	-0.6771	SMALL-LOSS	FOCAL	2	"HSD17B10,RIBC1"
TCGA.AA.A00N.01A	23	53590668	53661133	44	-1.0853	SMALL-LOSS	FOCAL	1	HUWE1
TCGA.AG.3909.01A	23	53600673	53610488	6	-1.0515	SMALL-LOSS	FOCAL	1	HUWE1
TCGA.CK.5914.01A	23	53600673	53615355	11	-0.6728	SMALL-LOSS	FOCAL	1	HUWE1
TCGA.A6.3808.01A	23	53602062	53655427	33	-0.8728	SMALL-LOSS	FOCAL	1	HUWE1
TCGA.AA.A01Q.01A	23	53644250	53661133	11	-0.7855	SMALL-LOSS	FOCAL	1	HUWE1
TCGA.AA.A010.01A	23	53675107	54037504	20	-0.7561	SMALL-LOSS	FOCAL	2	"HUWE1,PHF8"
TCGA.AA.A00N.01A	23	54159073	54162885	5	-1.297	SMALL-LOSS	FOCAL	1	FAM120C
TCGA.AA.3930.01A	23	54835691	54951969	15	-0.5211	SMALL-LOSS	FOCAL	2	"MAGED2,TRO"
TCGA.AA.A010.01A	23	54984678	55020296	6	-0.6328	SMALL-LOSS	FOCAL	1	PFKFB1
TCGA.AG.A01W.01A	23	55046074	55060607	8	-0.6091	SMALL-LOSS	FOCAL	1	ALAS2
TCGA.AA.A00N.01A	23	55513200	56276624	16	-0.7164	SMALL-LOSS	FOCAL	4	"FOXR2,KLF8,RRAGB,USP51"
TCGA.AG.4009.01A	23	57618444	57935244	4	-0.553	SMALL-LOSS	FOCAL	2	"ZXDA,ZXDB"
TCGA.AA.A00N.01A	23	57618444	62569902	5	-1.2356	SMALL-LOSS	FOCAL	3	"SPIN4,ZXDA,ZXDB"
TCGA.AZ.4614	23	58496484	63703713	104	-0.7941	SMALL-LOSS	FOCAL	5	"AMER1,ARHGEF9,ASB12,MTMR8,SPIN4"
TCGA.AA.A010.01A	23	64887618	67421415	71	-1.0257	SMALL-LOSS	FOCAL	6	"AR,EDA2R,HEPH,MSN,OPHN1,VSIG4"
TCGA.AG.A01L.01A	23	65238666	65247233	5	-0.6409	SMALL-LOSS	FOCAL	1	VSIG4
TCGA.AG.3893	23	68449559	68461120	6	-0.955	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	23	68981351	69083184	32	-0.97005	SMALL-LOSS	FOCAL	1	EDA
TCGA.AG.A01W.01A	23	69412619	69421095	16	-0.6322	SMALL-LOSS	FOCAL	1	DGAT2L6
TCGA.AG.A016.01A	23	69496243	69500864	9	-0.5602	SMALL-LOSS	FOCAL	1	ARR3
TCGA.AG.3909.01A	23	69496243	69553412	30	-0.6209	SMALL-LOSS	FOCAL	4	"ARR3,KIF4A,PDZD11,RAB41"
TCGA.AG.A015.01A	23	69500000	69504101	11	-0.5839	SMALL-LOSS	FOCAL	2	"ARR3,RAB41"
TCGA.AG.A016.01A	23	69501466	69504101	7	-0.8598	SMALL-LOSS	FOCAL	2	"ARR3,RAB41"
TCGA.AA.A010.01A	23	69518906	69595901	13	-0.7272	SMALL-LOSS	FOCAL	1	KIF4A
TCGA.AA.A010.01A	23	69606422	69646699	20	-1.2203	SMALL-LOSS	FOCAL	2	"GDPD2,KIF4A"
TCGA.AG.3909.01A	23	69649321	69674022	14	-0.7537	SMALL-LOSS	FOCAL	2	"DLG3,GDPD2"
TCGA.AA.A00N.01A	23	69649321	69698962	16	-1.0916	SMALL-LOSS	FOCAL	2	"DLG3,GDPD2"
TCGA.AG.4009.01A	23	69668689	69674022	9	-0.577	SMALL-LOSS	FOCAL	1	DLG3
TCGA.AA.A010.01A	23	69711927	69811556	17	-0.5539	SMALL-LOSS	FOCAL	2	"DLG3,TEX11"
TCGA.AA.A00N.01A	23	69811556	69902477	12	-0.872	SMALL-LOSS	FOCAL	1	TEX11
TCGA.AG.3909.01A	23	69811556	69942408	13	-0.7307	SMALL-LOSS	FOCAL	1	TEX11
TCGA.AA.A010.01A	23	69849414	70072896	12	-0.7765	SMALL-LOSS	FOCAL	1	TEX11
TCGA.AG.A01W.01A	23	70269404	70278682	11	-0.7704	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	70280819	70287975	4	-0.7613	SMALL-LOSS	FOCAL	1	SNX12
TCGA.CK.5914.01A	23	70641095	70678059	6	-0.9358	SMALL-LOSS	FOCAL	1	TAF1
TCGA.AG.3909.01A	23	70793428	71350264	19	-0.7802	SMALL-LOSS	FOCAL	7	"ACRC,CXCR3,CXorf49,CXorf49B,NHSL2,OGT,RGAG4"
TCGA.F4.6570	23	71044841	71094741	6	-0.6351	SMALL-LOSS	FOCAL	0	None
TCGA.AY.A71X	23	71281691	71329672	11	-0.8442	SMALL-LOSS	FOCAL	1	NHSL2
TCGA.AA.A010.01A	23	71401512	71427327	6	-1.2647	SMALL-LOSS	FOCAL	2	"ERCC6L,PIN4"
TCGA.AA.A010.01A	23	71458641	71496988	9	-0.5156	SMALL-LOSS	FOCAL	3	"ERCC6L,PIN4,RPS4X"
TCGA.AG.3909.01A	23	71492584	71522645	9	-0.9762	SMALL-LOSS	FOCAL	2	"CITED1,RPS4X"
TCGA.CK.5914.01A	23	71493030	71495948	6	-1.0916	SMALL-LOSS	FOCAL	1	RPS4X
TCGA.AA.A010.01A	23	71571536	71875921	34	-0.6202	SMALL-LOSS	FOCAL	2	"HDAC8,PHKA1"
TCGA.AA.3850	23	71593010	72961599	128	-0.94335	SMALL-LOSS	FOCAL	9	"CDX4,CHIC1,DMRTC1,DMRTC1B,HDAC8,NAP1L2,PABPC1L2A,PABPC1L2B,PHKA1"
TCGA.AA.A00N.01A	23	71714989	71791836	4	-1.0208	SMALL-LOSS	FOCAL	1	HDAC8
TCGA.AA.A00N.01A	23	71885953	72224596	13	-1.0078	SMALL-LOSS	FOCAL	4	"DMRTC1,DMRTC1B,PABPC1L2B,PHKA1"
TCGA.AG.3909.01A	23	71887188	71933593	7	-1.0561	SMALL-LOSS	FOCAL	1	PHKA1
TCGA.AG.3891.01A	23	71932580	72347361	10	-0.6184	SMALL-LOSS	FOCAL	5	"DMRTC1,DMRTC1B,PABPC1L2A,PABPC1L2B,PHKA1"
TCGA.AG.A01W.01A	23	71983418	72010091	3	-0.778	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6570	23	73400369	73855584	64	-0.5639	SMALL-LOSS	FOCAL	3	"RLIM,SLC16A2,ZCCHC13"
TCGA.AA.3930.01A	23	74375888	74523200	8	-0.6201	SMALL-LOSS	FOCAL	2	"ABCB7,UPRT"
TCGA.AG.3885	23	75089672	76144680	232	-1.309	SMALL-LOSS	FOCAL	2	"MAGEE1,PBDC1"
TCGA.AA.A00N.01A	23	77359781	77394293	15	-0.6148	SMALL-LOSS	FOCAL	2	"PGK1,TAF9B"
TCGA.AG.3909.01A	23	77365292	77394293	14	-0.8933	SMALL-LOSS	FOCAL	2	"PGK1,TAF9B"
TCGA.AA.A010.01A	23	78010335	78427568	5	-1.2776	SMALL-LOSS	FOCAL	3	"GPR174,LPAR4,P2RY10"
TCGA.F5.6810	23	78610582	78618840	3	-0.8364	SMALL-LOSS	FOCAL	1	ITM2A
TCGA.AA.A010.01A	23	79282689	79960167	21	-1.1317	SMALL-LOSS	FOCAL	3	"BRWD3,FAM46D,TBX22"
TCGA.AA.A01S	23	79676993	80174251	50	-1.10765	SMALL-LOSS	FOCAL	2	"BRWD3,FAM46D"
TCGA.AF.3914.01A	23	79939461	79974941	18	-0.7954	SMALL-LOSS	FOCAL	1	BRWD3
TCGA.AA.A00N.01A	23	79955414	79980382	11	-1.294	SMALL-LOSS	FOCAL	1	BRWD3
TCGA.AG.3909.01A	23	79958927	79974941	7	-1.2102	SMALL-LOSS	FOCAL	1	BRWD3
TCGA.F5.6465	23	81871746	81878849	3	-0.7956	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	84502522	84537138	9	-1.1429	SMALL-LOSS	FOCAL	2	"POF1B,ZNF711"
TCGA.AA.A010.01A	23	84534378	86919725	56	-0.8217	SMALL-LOSS	FOCAL	4	"CHM,DACH2,KLHL4,POF1B"
TCGA.CK.6746	23	84945290	84945935	3	-1.3026	SMALL-LOSS	FOCAL	0	None
TCGA.CM.6171	23	85162360	85920267	246	-0.6529	SMALL-LOSS	FOCAL	2	"CHM,DACH2"
TCGA.AG.3909.01A	23	85166233	85236677	7	-0.737	SMALL-LOSS	FOCAL	1	CHM
TCGA.AA.A00N.01A	23	85211128	85236677	6	-1.1783	SMALL-LOSS	FOCAL	1	CHM
TCGA.CM.6170	23	87116078	87122657	3	-0.9096	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.4614	23	87617864	87628661	18	-0.9412	SMALL-LOSS	FOCAL	0	None
TCGA.F4.6460	23	93274538	93544417	99	-0.7537	SMALL-LOSS	FOCAL	0	None
TCGA.QL.A97D	23	93423194	93429577	3	-1.2739	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3973	23	93431003	93439543	7	-0.5152	SMALL-LOSS	FOCAL	0	None
TCGA.AZ.6601	23	95815917	96254887	137	-0.5742	SMALL-LOSS	FOCAL	2	"DIAPH2,RPA4"
TCGA.AA.3982	23	97401408	99620989	409	-0.6523	SMALL-LOSS	FOCAL	1	PCDH19
TCGA.AA.3850	23	97433374	99598104	403	-1.27215	SMALL-LOSS	FOCAL	1	PCDH19
TCGA.AA.3941	23	97624194	99626131	383	-0.7273	SMALL-LOSS	FOCAL	1	PCDH19
TCGA.CK.5914.01A	23	99885740	99901263	8	-0.929	SMALL-LOSS	FOCAL	2	"SRPX2,TSPAN6"
TCGA.AG.3909.01A	23	99885740	99905724	9	-0.8193	SMALL-LOSS	FOCAL	2	"SRPX2,TSPAN6"
TCGA.AA.A010.01A	23	99933336	99956885	14	-0.7242	SMALL-LOSS	FOCAL	1	SYTL4
TCGA.AG.3909.01A	23	100183007	100229051	3	-0.9351	SMALL-LOSS	FOCAL	2	"ARL13A,XKRX"
TCGA.CK.5914.01A	23	100183007	100243140	7	-0.6215	SMALL-LOSS	FOCAL	2	"ARL13A,XKRX"
TCGA.AA.A00N.01A	23	100228617	100245496	7	-1.3164	SMALL-LOSS	FOCAL	1	ARL13A
TCGA.AA.A010.01A	23	100265538	100296234	11	-0.6264	SMALL-LOSS	FOCAL	1	TRMT2B
TCGA.AA.A00N.01A	23	100536644	100542413	5	-1.2407	SMALL-LOSS	FOCAL	1	TAF7L
TCGA.AA.A010.01A	23	101097663	101623682	22	-1.1136	SMALL-LOSS	FOCAL	8	"BEX5,NXF2,NXF2B,NXF5,TCEAL2,TCEAL6,TCP11X2,ZMAT1"
TCGA.CM.4750.01A	23	101571928	101581111	7	-0.7661	SMALL-LOSS	FOCAL	2	"NXF2,NXF2B"
TCGA.DM.A28M.01A	23	101571928	101719369	11	-1.045	SMALL-LOSS	FOCAL	3	"NXF2,NXF2B,TCP11X2"
TCGA.CK.4948.01B	23	101572329	101576299	5	-1.0809	SMALL-LOSS	FOCAL	2	"NXF2,NXF2B"
TCGA.AG.3906.01A	23	101615448	101624856	8	-0.898	SMALL-LOSS	FOCAL	2	"NXF2,NXF2B"
TCGA.AG.3909.01A	23	102756070	102931057	8	-0.6174	SMALL-LOSS	FOCAL	5	"MORF4L2,RAB40A,TCEAL1,TCEAL3,TCEAL4"
TCGA.AG.3909.01A	23	103080088	103497390	18	-0.6693	SMALL-LOSS	FOCAL	8	"ESX1,FAM199X,H2BFM,H2BFWT,RAB9B,SLC25A53,TMSB15B,ZCCHC18"
TCGA.AA.3941	23	103910923	105835866	286	-0.952	SMALL-LOSS	FOCAL	5	"IL1RAPL2,MUM1L1,NRK,SERPINA7,TEX13A"
TCGA.AG.A015.01A	23	105570728	105868272	5	-0.7832	SMALL-LOSS	FOCAL	1	CXorf57
TCGA.AG.3906.01A	23	105855284	105883745	10	-0.7588	SMALL-LOSS	FOCAL	1	CXorf57
TCGA.AA.A00N.01A	23	106224071	106236422	5	-1.1614	SMALL-LOSS	FOCAL	1	MORC4
TCGA.CK.4952.01A	23	106304907	106373038	7	-1.1341	SMALL-LOSS	FOCAL	2	"NUP62CL,RBM41"
TCGA.AG.3909.01A	23	106358534	106390905	5	-1.1657	SMALL-LOSS	FOCAL	2	"NUP62CL,RBM41"
TCGA.AA.A00N.01A	23	106957759	106965013	4	-1.2768	SMALL-LOSS	FOCAL	1	TSC22D3
TCGA.AA.A010.01A	23	107224298	107319277	7	-0.5683	SMALL-LOSS	FOCAL	2	"TEX13B,VSIG1"
TCGA.AA.3930.01A	23	107320230	107334980	6	-0.588	SMALL-LOSS	FOCAL	3	"ATG4A,PSMD10,VSIG1"
TCGA.AA.A010.01A	23	107413112	107553919	32	-0.7796	SMALL-LOSS	FOCAL	1	COL4A6
TCGA.AA.A010.01A	23	107816755	107911498	31	-0.8978	SMALL-LOSS	FOCAL	1	COL4A5
TCGA.AA.3930.01A	23	107938448	107978050	5	-0.5211	SMALL-LOSS	FOCAL	2	"COL4A5,IRS4"
TCGA.AA.A00N.01A	23	107939481	107978050	4	-0.717	SMALL-LOSS	FOCAL	2	"COL4A5,IRS4"
TCGA.AG.3909.01A	23	107975774	107978050	3	-1.0412	SMALL-LOSS	FOCAL	1	IRS4
TCGA.AA.A017.01A	23	108779063	108785714	5	-0.6499	SMALL-LOSS	FOCAL	1	NXT2
TCGA.CK.5914.01A	23	108779063	108926368	19	-0.5203	SMALL-LOSS	FOCAL	3	"ACSL4,KCNE5,NXT2"
TCGA.AG.3909.01A	23	108781216	108904720	7	-0.7927	SMALL-LOSS	FOCAL	3	"ACSL4,KCNE5,NXT2"
TCGA.AG.3909.01A	23	108906403	108917566	5	-1.1544	SMALL-LOSS	FOCAL	1	ACSL4
TCGA.AG.3909.01A	23	108921167	109246971	6	-0.7002	SMALL-LOSS	FOCAL	2	"ACSL4,TMEM164"
TCGA.AA.3930.01A	23	110366285	110389720	4	-0.7588	SMALL-LOSS	FOCAL	1	PAK3
TCGA.AG.A01W.01A	23	110376414	110381383	7	-0.778	SMALL-LOSS	FOCAL	1	PAK3
TCGA.AG.A015.01A	23	110489763	110494758	7	-0.6996	SMALL-LOSS	FOCAL	1	CAPN6
TCGA.CK.5914.01A	23	110495518	110506950	4	-0.8797	SMALL-LOSS	FOCAL	1	CAPN6
TCGA.CK.5914.01A	23	110925313	110931078	3	-0.7513	SMALL-LOSS	FOCAL	1	ALG13
TCGA.AA.3930.01A	23	110968121	110978243	7	-0.6723	SMALL-LOSS	FOCAL	1	ALG13
TCGA.AA.3850	23	111609324	114219941	663	-0.67475	SMALL-LOSS	FOCAL	4	"AMOT,HTR2C,LHFPL1,ZCCHC16"
TCGA.AA.3555	23	112908232	113411452	121	-0.8286	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	23	114232259	116167919	513	-0.61675	SMALL-LOSS	FOCAL	8	"AGTR2,CT83,IL13RA2,LRCH2,LUZP4,PLS3,RBMXL3,SLC6A14"
TCGA.AA.A02H.01A	23	114242474	114251709	7	-1.1827	SMALL-LOSS	FOCAL	1	IL13RA2
TCGA.AA.A00N.01A	23	114400765	114540762	12	-0.6838	SMALL-LOSS	FOCAL	3	"LRCH2,LUZP4,RBMXL3"
TCGA.AG.3909.01A	23	114404852	114540762	11	-0.8749	SMALL-LOSS	FOCAL	3	"LRCH2,LUZP4,RBMXL3"
TCGA.A6.3808.01A	23	114404852	115304287	29	-0.7571	SMALL-LOSS	FOCAL	5	"AGTR2,LRCH2,LUZP4,PLS3,RBMXL3"
TCGA.A6.3808.01A	23	115589923	117749532	57	-0.6367	SMALL-LOSS	FOCAL	5	"CT83,DOCK11,KLHL13,SLC6A14,WDR44"
TCGA.AA.3850	23	116191688	117280084	389	-0.62645	SMALL-LOSS	FOCAL	1	KLHL13
TCGA.EI.6508	23	116339422	116409296	23	-0.5662	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	117874933	118227911	30	-0.7463	SMALL-LOSS	FOCAL	4	"IL13RA1,KIAA1210,LONRF3,ZCCHC12"
TCGA.CK.5914.01A	23	117895049	118116733	11	-0.6704	SMALL-LOSS	FOCAL	3	"IL13RA1,LONRF3,ZCCHC12"
TCGA.F4.6460	23	118339182	118344090	4	-0.5312	SMALL-LOSS	FOCAL	0	None
TCGA.AF.2692	23	118339182	118346837	5	-0.5888	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3860	23	118342425	118344090	3	-0.7907	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	118709254	118759242	10	-1.3011	SMALL-LOSS	FOCAL	3	"NKRF,SEPT6,UBE2A"
TCGA.AG.3909.01A	23	118977116	119402050	34	-0.5669	SMALL-LOSS	FOCAL	10	"AKAP14,NDUFA1,NKAP,RHOXF1,RHOXF2,RHOXF2B,RNF113A,TMEM255A,UPF3B,ZBTB33"
TCGA.CK.5914.01A	23	118985421	119394695	33	-0.5997	SMALL-LOSS	FOCAL	10	"AKAP14,NDUFA1,NKAP,RHOXF1,RHOXF2,RHOXF2B,RNF113A,TMEM255A,UPF3B,ZBTB33"
TCGA.AA.A00N.01A	23	119243102	119402050	12	-0.8264	SMALL-LOSS	FOCAL	5	"RHOXF1,RHOXF2,RHOXF2B,TMEM255A,ZBTB33"
TCGA.AA.3811	23	120413108	122488681	687	-0.7379	SMALL-LOSS	FOCAL	1	GRIA3
TCGA.AA.3949	23	120861569	120919453	21	-0.7704	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3850	23	121636965	122728638	403	-1.08425	SMALL-LOSS	FOCAL	1	GRIA3
TCGA.DM.A1D0	23	122471442	122503368	12	-1.0254	SMALL-LOSS	FOCAL	1	GRIA3
TCGA.AG.3909.01A	23	122829821	122840670	5	-1.0717	SMALL-LOSS	FOCAL	1	THOC2
TCGA.A6.3808.01A	23	122837233	123224378	36	-1.297	SMALL-LOSS	FOCAL	3	"STAG2,THOC2,XIAP"
TCGA.AA.3811	23	123621510	123647477	17	-1.2143	SMALL-LOSS	FOCAL	1	TENM1
TCGA.AA.3850	23	123621820	128511414	1215	-1.05555	SMALL-LOSS	FOCAL	6	"ACTRT1,DCAF12L1,DCAF12L2,LOC100129520,PRR32,TENM1"
TCGA.AA.3811	23	123850866	128039856	972	-0.7927	SMALL-LOSS	FOCAL	6	"ACTRT1,DCAF12L1,DCAF12L2,LOC100129520,PRR32,TENM1"
TCGA.5M.AAT5	23	124421572	124459338	9	-0.611	SMALL-LOSS	FOCAL	1	LOC100129520
TCGA.CK.6746	23	126486462	126489223	3	-1.0179	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	128633682	128692578	15	-0.9008	SMALL-LOSS	FOCAL	2	"OCRL,SMARCA1"
TCGA.AG.3909.01A	23	128640038	128703193	19	-0.9238	SMALL-LOSS	FOCAL	2	"OCRL,SMARCA1"
TCGA.AA.A01Q.01A	23	128877887	128889232	11	-0.7213	SMALL-LOSS	FOCAL	1	XPNPEP2
TCGA.AA.A010.01A	23	128940325	128948597	6	-0.624	SMALL-LOSS	FOCAL	1	ZDHHC9
TCGA.AA.A010.01A	23	129146503	129215171	19	-0.7909	SMALL-LOSS	FOCAL	2	"BCORL1,ELF4"
TCGA.AA.A02H.01A	23	129184630	129215171	10	-0.809	SMALL-LOSS	FOCAL	2	"BCORL1,ELF4"
TCGA.AA.A01Q.01A	23	129203245	129215171	6	-0.9422	SMALL-LOSS	FOCAL	1	ELF4
TCGA.AG.3909.01A	23	129394311	129790514	24	-0.6115	SMALL-LOSS	FOCAL	5	"ENOX2,GPR119,RBMX2,SLC25A14,ZNF280C"
TCGA.AA.A00N.01A	23	132159455	132351652	5	-1.084	SMALL-LOSS	FOCAL	2	"TFDP3,USP26"
TCGA.AA.A00N.01A	23	133674183	134125087	24	-0.8854	SMALL-LOSS	FOCAL	5	"FAM122B,FAM122C,MOSPD1,PLAC1,SMIM10"
TCGA.AG.3909.01A	23	133915833	134185756	21	-0.7335	SMALL-LOSS	FOCAL	7	"FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,MOSPD1,SMIM10"
TCGA.AA.A02H.01A	23	134947860	135084220	29	-0.6703	SMALL-LOSS	FOCAL	5	"CT45A10,CT45A7,MMGT1,SAGE1,SLC9A6"
TCGA.AA.A00N.01A	23	135047136	135084220	12	-1.2844	SMALL-LOSS	FOCAL	2	"MMGT1,SLC9A6"
TCGA.AG.3909.01A	23	135047136	135084220	9	-1.03	SMALL-LOSS	FOCAL	2	"MMGT1,SLC9A6"
TCGA.AA.A00N.01A	23	135318354	135390910	6	-1.3068	SMALL-LOSS	FOCAL	2	"ADGRG4,MAP7D3"
TCGA.AA.A010.01A	23	135404895	135477502	17	-1.0921	SMALL-LOSS	FOCAL	1	ADGRG4
TCGA.AA.3844	23	135426692	135431357	3	-1.241	SMALL-LOSS	FOCAL	1	ADGRG4
TCGA.CK.5914.01A	23	135570233	135593660	13	-0.5755	SMALL-LOSS	FOCAL	2	"BRS3,HTATSF1"
TCGA.AA.A010.01A	23	136112255	138845438	62	-1.0251	SMALL-LOSS	FOCAL	6	"ATP11C,F9,FGF13,GPR101,MCF2,ZIC3"
TCGA.CK.5914.01A	23	136651044	136659233	3	-1.2334	SMALL-LOSS	FOCAL	1	ZIC3
TCGA.AA.A00N.01A	23	136651044	138286159	12	-0.8393	SMALL-LOSS	FOCAL	2	"FGF13,ZIC3"
TCGA.AA.A010.01A	23	138878413	138886583	7	-1.1655	SMALL-LOSS	FOCAL	1	ATP11C
TCGA.AG.A015.01A	23	138914229	139585863	6	-0.7001	SMALL-LOSS	FOCAL	4	"ATP11C,CXorf66,LOC389895,SOX3"
TCGA.AG.A016.01A	23	140270729	140953207	7	-0.6008	SMALL-LOSS	FOCAL	6	"LDOC1,MAGEC3,SPANXA1,SPANXA2,SPANXC,SPANXD"
TCGA.AA.3844	23	141086625	141091848	8	-0.8442	SMALL-LOSS	FOCAL	0	None
TCGA.D5.6533	23	141309063	141310515	4	-0.6686	SMALL-LOSS	FOCAL	0	None
TCGA.AG.3909.01A	23	142716364	144909194	10	-0.6917	SMALL-LOSS	FOCAL	6	"SLITRK2,SLITRK4,SPANXN1,SPANXN2,TMEM257,UBE2NL"
TCGA.AA.3850	23	143971326	144675104	272	-0.79255	SMALL-LOSS	FOCAL	1	SPANXN1
TCGA.AA.3850	23	144693302	145584920	358	-0.55345	SMALL-LOSS	FOCAL	2	"SLITRK2,TMEM257"
TCGA.AA.3850	23	145605892	148536507	934	-0.84945	SMALL-LOSS	FOCAL	5	"AFF2,CXorf51A,CXorf51B,FMR1,FMR1NB"
TCGA.EI.6506	23	146179984	146184148	3	-1.1919	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A02K.01A	23	146363390	146366095	2	-0.7825	SMALL-LOSS	FOCAL	0	None
TCGA.AA.A00N.01A	23	146993625	147014827	8	-1.047	SMALL-LOSS	FOCAL	1	FMR1
TCGA.AG.A016.01A	23	147003376	147026998	13	-0.6245	SMALL-LOSS	FOCAL	1	FMR1
TCGA.AA.A00N.01A	23	147062916	147582544	6	-0.8591	SMALL-LOSS	FOCAL	2	"AFF2,FMR1NB"
TCGA.AG.3909.01A	23	148564275	149100712	21	-0.7695	SMALL-LOSS	FOCAL	10	"CXorf40A,CXorf40B,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,TMEM185A"
TCGA.AA.A00N.01A	23	148568418	149100712	24	-0.9035	SMALL-LOSS	FOCAL	10	"CXorf40A,CXorf40B,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,TMEM185A"
TCGA.AA.3971	23	148718686	149014682	36	-0.5509	SMALL-LOSS	FOCAL	6	"HSFX1,HSFX2,MAGEA11,MAGEA8,MAGEA9,MAGEA9B"
TCGA.AA.3693	23	149478039	149517396	15	-0.6111	SMALL-LOSS	FOCAL	0	None
TCGA.AA.3941	23	149808153	149814857	5	-0.896	SMALL-LOSS	FOCAL	1	MTM1
TCGA.AA.A010.01A	23	149962110	150066929	6	-0.7493	SMALL-LOSS	FOCAL	1	CD99L2
TCGA.AA.A01Q.01A	23	150154177	150156200	4	-1.0235	SMALL-LOSS	FOCAL	1	HMGB3
TCGA.CK.5914.01A	23	150154177	150773061	12	-0.7415	SMALL-LOSS	FOCAL	4	"GPR50,HMGB3,PASD1,VMA21"
TCGA.AG.3909.01A	23	150345156	150780083	8	-1.1203	SMALL-LOSS	FOCAL	3	"GPR50,PASD1,VMA21"
TCGA.AA.A01Q.01A	23	150867193	150906958	9	-0.7624	SMALL-LOSS	FOCAL	3	"CNGA2,FATE1,PRRG3"
TCGA.AA.3850	23	151255495	151733596	106	-0.64485	SMALL-LOSS	FOCAL	4	"GABRA3,MAGEA10,MAGEA10-MAGEA5,MAGEA5"
TCGA.AG.3909.01A	23	151806627	152014822	22	-0.6123	SMALL-LOSS	FOCAL	10	"CETN2,CSAG1,CSAG3,GABRQ,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,NSDHL"
TCGA.AA.A00N.01A	23	152100167	152734556	37	-0.9061	SMALL-LOSS	FOCAL	9	"HAUS7,MAGEA1,PNMA3,PNMA5,PNMA6A,TREX2,ZFP92,ZNF185,ZNF275"
TCGA.AA.A010.01A	23	152101365	152158746	12	-0.608	SMALL-LOSS	FOCAL	2	"PNMA5,ZNF185"
TCGA.AA.A01Q.01A	23	152710157	152990705	61	-0.7782	SMALL-LOSS	FOCAL	10	"ABCD1,ATP2B3,BCAP31,BGN,DUSP9,FAM58A,HAUS7,PNCK,SLC6A8,TREX2"
TCGA.AA.A010.01A	23	152818455	152835024	9	-1.0867	SMALL-LOSS	FOCAL	1	ATP2B3
TCGA.AA.A00N.01A	23	152835024	152966325	25	-0.5649	SMALL-LOSS	FOCAL	6	"ATP2B3,BCAP31,DUSP9,FAM58A,PNCK,SLC6A8"
TCGA.A6.3808.01A	23	153059653	153200698	63	-0.8803	SMALL-LOSS	FOCAL	7	"ARHGAP4,AVPR2,IDH3G,L1CAM,NAA10,PDZD4,SSR4"
TCGA.AA.A01Q.01A	23	153195393	153199781	6	-1.1838	SMALL-LOSS	FOCAL	1	NAA10
TCGA.AG.A015.01A	23	153205514	153208947	4	-0.762	SMALL-LOSS	FOCAL	1	RENBP
TCGA.A6.3808.01A	23	153217927	153557845	55	-0.7639	SMALL-LOSS	FOCAL	9	"HCFC1,IRAK1,MECP2,OPN1LW,OPN1MW,OPN1MW2,TEX28,TKTL1,TMEM187"
TCGA.AG.A01W.01A	23	153352655	153359768	5	-0.8173	SMALL-LOSS	FOCAL	1	MECP2
TCGA.AA.A024.01A	23	153416081	153421722	4	-0.5148	SMALL-LOSS	FOCAL	1	OPN1LW
TCGA.CM.4750.01A	23	153418406	153455536	5	-0.7072	SMALL-LOSS	FOCAL	3	"OPN1LW,OPN1MW,OPN1MW2"
TCGA.AA.A010.01A	23	153533254	153537659	3	-1.0851	SMALL-LOSS	FOCAL	1	TKTL1
TCGA.AG.4009.01A	23	153577712	153628096	27	-0.5551	SMALL-LOSS	FOCAL	3	"EMD,FLNA,RPL10"
TCGA.AA.A01Q.01A	23	153657387	153689439	24	-1.3013	SMALL-LOSS	FOCAL	4	"ATP6AP1,FAM50A,GDI1,PLXNA3"
TCGA.AG.4009.01A	23	153660116	153663421	6	-0.707	SMALL-LOSS	FOCAL	1	ATP6AP1
TCGA.AF.3914.01A	23	153661200	153690431	21	-1.0661	SMALL-LOSS	FOCAL	4	"ATP6AP1,FAM50A,GDI1,PLXNA3"
TCGA.AG.4009.01A	23	153664016	153690431	17	-1.0332	SMALL-LOSS	FOCAL	4	"ATP6AP1,FAM50A,GDI1,PLXNA3"
TCGA.AA.A01Q.01A	23	153690431	153780166	40	-0.6219	SMALL-LOSS	FOCAL	7	"FAM3A,G6PD,IKBKG,LAGE3,PLXNA3,SLC10A3,UBL4A"
TCGA.AG.A015.01A	23	153699478	153706243	4	-0.6134	SMALL-LOSS	FOCAL	2	"LAGE3,PLXNA3"
TCGA.AA.A010.01A	23	153792515	153991171	15	-1.0002	SMALL-LOSS	FOCAL	6	"CTAG1A,CTAG1B,CTAG2,DKC1,GAB3,IKBKG"
TCGA.AA.A01K.01A	23	153927540	154005010	19	-1.0298	SMALL-LOSS	FOCAL	2	"DKC1,GAB3"
TCGA.AG.3909.01A	23	153993116	153995214	5	-1.1525	SMALL-LOSS	FOCAL	1	DKC1
TCGA.CK.5914.01A	23	153993116	154005010	14	-1.0449	SMALL-LOSS	FOCAL	1	DKC1
TCGA.AA.A02E.01A	23	153996557	154005010	8	-1.02	SMALL-LOSS	FOCAL	1	DKC1
TCGA.AG.3909.01A	23	154011651	154020377	8	-1.2001	SMALL-LOSS	FOCAL	1	MPP1
TCGA.AA.A010.01A	23	154134658	154159274	5	-1.2365	SMALL-LOSS	FOCAL	1	F8
TCGA.AA.A00N.01A	23	154250636	154528046	33	-0.9707	SMALL-LOSS	FOCAL	8	"BRCC3,CLIC2,CMC4,F8,FUNDC2,MTCP1,RAB39B,VBP1"
TCGA.CK.5914.01A	23	155003485	155009837	7	-0.8877	SMALL-LOSS	FOCAL	1	SPRY3
TCGA.AA.3930.01A	23	155003485	155171558	14	-0.6498	SMALL-LOSS	FOCAL	2	"SPRY3,VAMP7"
TCGA.AA.A00N.01A	23	155119100	155149424	5	-0.8357	SMALL-LOSS	FOCAL	1	VAMP7
TCGA.AG.3909.01A	23	155119100	155171558	7	-1.0644	SMALL-LOSS	FOCAL	1	VAMP7
TCGA.CK.5914.01A	23	155119100	155171558	7	-1.1597	SMALL-LOSS	FOCAL	1	VAMP7
TCGA.AZ.4684.01A	23	155149424	155254944	17	-0.556	SMALL-LOSS	FOCAL	2	"IL9R,VAMP7"
TCGA.AG.A016.01A	23	155169343	155239443	12	-0.6748	SMALL-LOSS	FOCAL	2	"IL9R,VAMP7"
TCGA.AA.A024.01A	23	155231023	155239443	9	-0.5628	SMALL-LOSS	FOCAL	1	IL9R
TCGA.AG.A015.01A	23	155233062	155239443	7	-0.8976	SMALL-LOSS	FOCAL	1	IL9R
TCGA.AA.A004.01A	23	155235701	155239443	3	-0.7896	SMALL-LOSS	FOCAL	1	IL9R
TCGA.AA.3939.01A	24	2654981	6115338	25	-0.6347	SMALL-LOSS	FOCAL	6	"PCDH11Y,RPS4Y1,SRY,TGIF2LY,TSPY2,ZFY"
TCGA.AA.A02H.01A	24	4900654	14838459	3	-0.8485	SMALL-LOSS	FOCAL	10	"AMELY,PCDH11Y,TBL1Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y"
TCGA.AG.A032.01A	24	6948723	6958098	5	-0.5935	SMALL-LOSS	FOCAL	1	TBL1Y
TCGA.AG.A016.01A	24	6953879	6955297	3	-1.2521	SMALL-LOSS	FOCAL	1	TBL1Y
TCGA.AA.A00L.01A	24	20138012	21764092	8	-0.6821	SMALL-LOSS	FOCAL	7	"CD24,CDY2A,CDY2B,HSFY1,HSFY2,XKRY,XKRY2"
TCGA.AA.3930.01A	24	21877208	21906231	11	-0.5925	SMALL-LOSS	FOCAL	1	KDM5D
TCGA.CK.5914.01A	1	69079	1323133	183	-0.9562	SMALL-LOSS	NONFOCAL	31	"ACAP3,AGRN,AURKAIP1,B3GALT6,C1orf159,CCNL2,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MXRA8,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,TAS1R3,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.AG.4009.01A	1	69079	1639564	123	-0.5996	SMALL-LOSS	NONFOCAL	46	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,CCNL2,CDK11A,CDK11B,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MIB2,MMP23B,MRPL20,MXRA8,NOC2L,OR4F16,OR4F29,OR4F3,OR4F5,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.AA.3509.01A	1	69079	9931988	1072	-0.8302	SMALL-LOSS	NONFOCAL	121	Too-Many
TCGA.AG.A023.01A	1	69079	33415123	2939	-0.5824	SMALL-LOSS	NONFOCAL	453	Too-Many
TCGA.AA.A02F.01A	1	69079	34181848	2620	-0.7812	SMALL-LOSS	NONFOCAL	461	Too-Many
TCGA.CA.5254	1	564620	1462765	47	-0.7295	SMALL-LOSS	NONFOCAL	37	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,CCNL2,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MRPL20,MXRA8,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,TAS1R3,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.CA.6719	1	564620	1948399	74	-0.5483	SMALL-LOSS	NONFOCAL	51	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,GNB1,HES4,ISG15,KLHL17,MIB2,MMP23B,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PERM1,PLEKHN1,PUSL1,RNF223,SAMD11,SCNN1D,SDF4,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.A6.5665	1	564620	4797497	923	-0.9437	SMALL-LOSS	NONFOCAL	79	"ACAP3,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CPSF3L,CPTP,DFFB,DVL1,FAM132A,FAM213B,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73"
TCGA.EI.6511	1	564620	6955332	1733	-0.6404	SMALL-LOSS	NONFOCAL	100	"ACAP3,ACOT7,ACTRT2,AGRN,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf174,C1orf233,C1orf86,CALML6,CAMTA1,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,CPSF3L,CPTP,DFFB,DNAJC11,DVL1,ESPN,FAM132A,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES4,HES5,ICMT,ISG15,KCNAB2,KLHL17,KLHL21,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,NOL9,NPHP4,OR4F16,OR4F29,OR4F3,PANK4,PERM1,PEX10,PHF13,PLCH2,PLEKHG5,PLEKHN1,PRDM16,PRKCZ,PUSL1,RER1,RNF207,RNF223,RPL22,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R1,TAS1R3,THAP3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF25,TNFRSF4,TP73,TPRG1L,TTC34,TTLL10,UBE2J2,VWA1,WRAP73,ZBTB48"
TCGA.AA.3858	1	564620	8343646	2211	-1.2255	SMALL-LOSS	NONFOCAL	106	Too-Many
TCGA.AA.3679	1	564620	11130642	2786	-0.814	SMALL-LOSS	NONFOCAL	137	Too-Many
TCGA.G5.6572	1	564620	12105331	3052	-0.6729	SMALL-LOSS	NONFOCAL	156	Too-Many
TCGA.G4.6322	1	564620	16363939	4269	-0.979	SMALL-LOSS	NONFOCAL	216	Too-Many
TCGA.A6.5661	1	564620	19721547	5352	-0.7367	SMALL-LOSS	NONFOCAL	253	Too-Many
TCGA.AA.3526	1	564620	29045122	7661	-0.6445	SMALL-LOSS	NONFOCAL	401	Too-Many
TCGA.A6.A56B	1	564620	30184425	7863	-0.525	SMALL-LOSS	NONFOCAL	408	Too-Many
TCGA.DC.6681	1	564620	31251697	8457	-0.565	SMALL-LOSS	NONFOCAL	410	Too-Many
TCGA.AA.3819	1	564620	31717049	8583	-0.5939	SMALL-LOSS	NONFOCAL	413	Too-Many
TCGA.DY.A1H8	1	564620	31802787	8599	-0.9031	SMALL-LOSS	NONFOCAL	415	Too-Many
TCGA.G5.6641	1	564620	31955532	8632	-0.5652	SMALL-LOSS	NONFOCAL	417	Too-Many
TCGA.AF.4110	1	564620	32320955	8725	-0.6367	SMALL-LOSS	NONFOCAL	423	Too-Many
TCGA.AG.A01Y	1	564620	34383661	9140	-0.9781	SMALL-LOSS	NONFOCAL	461	Too-Many
TCGA.A6.2677	1	564620	34835179	8820	-0.9066	SMALL-LOSS	NONFOCAL	462	Too-Many
TCGA.D5.6536	1	564620	35814933	9614	-0.7597	SMALL-LOSS	NONFOCAL	473	Too-Many
TCGA.DM.A1DB	1	564620	36375109	9689	-0.7671	SMALL-LOSS	NONFOCAL	481	Too-Many
TCGA.AA.3544	1	564620	37621303	10033	-0.7222	SMALL-LOSS	NONFOCAL	496	Too-Many
TCGA.AA.3531	1	564620	39823865	10618	-0.8461	SMALL-LOSS	NONFOCAL	521	Too-Many
TCGA.AF.2693	1	564620	40803854	10835	-0.6372	SMALL-LOSS	NONFOCAL	539	Too-Many
TCGA.F5.6864	1	564620	41044279	10874	-0.6072	SMALL-LOSS	NONFOCAL	544	Too-Many
TCGA.AA.3976	1	564620	41139583	10907	-0.5395	SMALL-LOSS	NONFOCAL	545	Too-Many
TCGA.D5.5540	1	564620	65029664	18444	-0.8389	SMALL-LOSS	NONFOCAL	744	Too-Many
TCGA.AG.3584	1	564620	101355548	29710	-0.6697	SMALL-LOSS	NONFOCAL	902	Too-Many
TCGA.NH.A8F8	1	564620	112392308	33028	-0.5994	SMALL-LOSS	NONFOCAL	985	Too-Many
TCGA.NH.A6GA	1	564620	117431252	34677	-0.7047	SMALL-LOSS	NONFOCAL	1027	Too-Many
TCGA.DC.4749	1	564620	119647945	35388	-0.5153	SMALL-LOSS	NONFOCAL	1039	Too-Many
TCGA.DM.A28A	1	564620	119913823	35414	-0.7773	SMALL-LOSS	NONFOCAL	1040	Too-Many
TCGA.D5.6533	1	564620	121291079	35593	-0.6443	SMALL-LOSS	NONFOCAL	1051	Too-Many
TCGA.AA.3973	1	564620	144549928	35698	-0.9531	SMALL-LOSS	NONFOCAL	1057	Too-Many
TCGA.DM.A1D6	1	564620	144938878	35719	-0.735	SMALL-LOSS	NONFOCAL	1060	Too-Many
TCGA.AA.3517	1	564620	144957687	35692	-0.8159	SMALL-LOSS	NONFOCAL	1060	Too-Many
TCGA.F5.6813	1	564620	145009381	35710	-0.5305	SMALL-LOSS	NONFOCAL	1060	Too-Many
TCGA.4N.A93T	1	564620	145013753	35730	-0.835	SMALL-LOSS	NONFOCAL	1060	Too-Many
TCGA.5M.AAT5	1	740856	22501715	6248	-0.8401	SMALL-LOSS	NONFOCAL	286	Too-Many
TCGA.DY.A0XA	1	740856	27504392	7453	-0.7537	SMALL-LOSS	NONFOCAL	368	Too-Many
TCGA.DC.6160.01A	1	751906	2516042	475	-0.7458	SMALL-LOSS	NONFOCAL	59	"ACAP3,AGRN,ANKRD65,ATAD3A,ATAD3B,ATAD3C,AURKAIP1,B3GALT6,C1orf159,C1orf233,C1orf86,CALML6,CCNL2,CDK11A,CDK11B,CFAP74,CPSF3L,CPTP,DVL1,FAM132A,GABRD,GNB1,HES4,HES5,ISG15,KLHL17,MIB2,MMP23B,MORN1,MRPL20,MXRA8,NADK,NOC2L,PANK4,PERM1,PEX10,PLCH2,PLEKHN1,PRKCZ,PUSL1,RER1,RNF223,SAMD11,SCNN1D,SDF4,SKI,SLC35E2,SLC35E2B,SSU72,TAS1R3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF18,TNFRSF4,TTLL10,UBE2J2,VWA1"
TCGA.DM.A1D4	1	765268	144549928	35703	-0.738	SMALL-LOSS	NONFOCAL	1054	Too-Many
TCGA.AA.A01K.01A	1	879056	11189753	668	-0.6836	SMALL-LOSS	NONFOCAL	135	Too-Many
TCGA.A6.6653	1	888658	1311715	35	-0.583	SMALL-LOSS	NONFOCAL	25	"ACAP3,AGRN,AURKAIP1,B3GALT6,C1orf159,CPSF3L,CPTP,DVL1,FAM132A,HES4,ISG15,KLHL17,MXRA8,NOC2L,PERM1,PLEKHN1,PUSL1,RNF223,SCNN1D,SDF4,TAS1R3,TNFRSF18,TNFRSF4,TTLL10,UBE2J2"
TCGA.AA.A02E.01A	1	1326099	8029363	369	-0.7725	SMALL-LOSS	NONFOCAL	76	"ACOT7,ACTRT2,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,C1orf174,C1orf233,C1orf86,CALML6,CAMTA1,CCDC27,CCNL2,CDK11A,CDK11B,CEP104,CFAP74,CHD5,DFFB,DNAJC11,ESPN,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES5,ICMT,KCNAB2,KLHL21,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,NADK,NOL9,NPHP4,PANK4,PARK7,PER3,PEX10,PHF13,PLCH2,PLEKHG5,PRDM16,PRKCZ,RER1,RNF207,RPL22,SKI,SLC35E2,SLC35E2B,SMIM1,SSU72,TAS1R1,THAP3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF25,TNFRSF9,TP73,TPRG1L,TTC34,UTS2,VAMP3,VWA1,WRAP73,ZBTB48"
TCGA.CK.5914.01A	1	1342292	8415076	740	-1.0699	SMALL-LOSS	NONFOCAL	78	"ACOT7,ACTRT2,AJAP1,ANKRD65,ARHGEF16,ATAD3A,ATAD3B,ATAD3C,C1orf174,C1orf233,C1orf86,CALML6,CAMTA1,CCDC27,CDK11A,CDK11B,CEP104,CFAP74,CHD5,DFFB,DNAJC11,ERRFI1,ESPN,FAM213B,GABRD,GNB1,GPR153,HES2,HES3,HES5,ICMT,KCNAB2,KLHL21,LRRC47,MEGF6,MIB2,MMEL1,MMP23B,MORN1,MRPL20,NADK,NOL9,NPHP4,PANK4,PARK7,PER3,PEX10,PHF13,PLCH2,PLEKHG5,PRDM16,PRKCZ,RER1,RERE,RNF207,RPL22,SKI,SLC35E2,SLC35E2B,SLC45A1,SMIM1,SSU72,TAS1R1,THAP3,TMEM240,TMEM52,TMEM88B,TNFRSF14,TNFRSF25,TNFRSF9,TP73,TPRG1L,TTC34,UTS2,VAMP3,VWA1,WRAP73,ZBTB48"
TCGA.AA.A01Q.01A	1	1423172	1720451	33	-0.6253	SMALL-LOSS	NONFOCAL	13	"ATAD3A,ATAD3B,C1orf233,CDK11A,CDK11B,GNB1,MIB2,MMP23B,NADK,SLC35E2,SLC35E2B,SSU72,TMEM240"
TCGA.AA.A00Q.01A	1	1463048	1756766	26	-0.6461	SMALL-LOSS	NONFOCAL	12	"ATAD3A,C1orf233,CDK11A,CDK11B,GNB1,MIB2,MMP23B,NADK,SLC35E2,SLC35E2B,SSU72,TMEM240"
TCGA.AA.A00N.01A	1	1663832	2322833	113	-0.7686	SMALL-LOSS	NONFOCAL	11	"C1orf86,CALML6,CFAP74,GABRD,GNB1,MORN1,NADK,PRKCZ,SKI,SLC35E2,TMEM52"
TCGA.RU.A8FL	1	1688191	10543835	2590	-0.6997	SMALL-LOSS	NONFOCAL	85	"ACOT7,ACTRT2,AJAP1,APITD1,APITD1-CORT,ARHGEF16,C1orf174,C1orf86,CA6,CALML6,CAMTA1,CCDC27,CEP104,CFAP74,CHD5,CLSTN1,CORT,CTNNBIP1,DFFA,DFFB,DNAJC11,ENO1,ERRFI1,ESPN,FAM213B,GABRD,GNB1,GPR153,GPR157,H6PD,HES2,HES3,HES5,ICMT,KCNAB2,KIF1B,KLHL21,LRRC47,LZIC,MEGF6,MMEL1,MORN1,NADK,NMNAT1,NOL9,NPHP4,PANK4,PARK7,PER3,PEX10,PEX14,PGD,PHF13,PIK3CD,PLCH2,PLEKHG5,PRDM16,PRKCZ,RBP7,RER1,RERE,RNF207,RPL22,SKI,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SMIM1,SPSB1,TAS1R1,THAP3,TMEM201,TMEM52,TNFRSF14,TNFRSF25,TNFRSF9,TP73,TPRG1L,TTC34,UBE4B,UTS2,VAMP3,WRAP73,ZBTB48"
TCGA.A6.6653	1	1829481	2725951	97	-0.5837	SMALL-LOSS	NONFOCAL	17	"C1orf86,CALML6,CFAP74,FAM213B,GABRD,HES5,MMEL1,MORN1,PANK4,PEX10,PLCH2,PRKCZ,RER1,SKI,TMEM52,TNFRSF14,TTC34"
TCGA.AG.3583	1	1871336	32062065	8326	-0.7529	SMALL-LOSS	NONFOCAL	368	Too-Many
TCGA.DC.5337	1	1888192	21324490	5850	-0.7779	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.CA.6719	1	1972461	11661964	2866	-1.077	SMALL-LOSS	NONFOCAL	89	"ACOT7,ACTRT2,AJAP1,ANGPTL7,APITD1,APITD1-CORT,ARHGEF16,C1orf127,C1orf174,C1orf86,CA6,CAMTA1,CASZ1,CCDC27,CEP104,CHD5,CLSTN1,CORT,CTNNBIP1,DFFA,DFFB,DNAJC11,ENO1,ERRFI1,ESPN,EXOSC10,FAM213B,GPR153,GPR157,H6PD,HES2,HES3,HES5,ICMT,KCNAB2,KIF1B,KLHL21,LRRC47,LZIC,MASP2,MEGF6,MMEL1,MORN1,MTOR,NMNAT1,NOL9,NPHP4,PANK4,PARK7,PER3,PEX10,PEX14,PGD,PHF13,PIK3CD,PLCH2,PLEKHG5,PRDM16,PRKCZ,PTCHD2,RBP7,RER1,RERE,RNF207,RPL22,SKI,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SMIM1,SPSB1,SRM,TARDBP,TAS1R1,THAP3,TMEM201,TNFRSF14,TNFRSF25,TNFRSF9,TP73,TPRG1L,TTC34,UBE4B,UBIAD1,UTS2,VAMP3,WRAP73,ZBTB48"
TCGA.A6.5666	1	2701815	27595861	7296	-0.809	SMALL-LOSS	NONFOCAL	308	Too-Many
TCGA.CI.6622	1	2701815	33637232	8702	-0.6504	SMALL-LOSS	NONFOCAL	391	Too-Many
TCGA.F4.6806	1	2846273	37070954	9600	-0.6433	SMALL-LOSS	NONFOCAL	430	Too-Many
TCGA.AG.3887	1	3165266	32554267	8435	-0.7983	SMALL-LOSS	NONFOCAL	360	Too-Many
TCGA.AG.3909.01A	1	3327920	6304386	174	-0.6859	SMALL-LOSS	NONFOCAL	20	"AJAP1,ARHGEF16,C1orf174,CCDC27,CEP104,CHD5,DFFB,HES3,ICMT,KCNAB2,LRRC47,MEGF6,NPHP4,PRDM16,RNF207,RPL22,SMIM1,TP73,TPRG1L,WRAP73"
TCGA.AA.3530	1	3544345	31625388	8164	-0.5409	SMALL-LOSS	NONFOCAL	343	Too-Many
TCGA.AA.A00Q.01A	1	3646515	6257660	107	-0.669	SMALL-LOSS	NONFOCAL	12	"AJAP1,C1orf174,CCDC27,CEP104,CHD5,DFFB,KCNAB2,LRRC47,NPHP4,RPL22,SMIM1,TP73"
TCGA.A6.4107	1	4352709	9213176	1786	-0.7872	SMALL-LOSS	NONFOCAL	35	"ACOT7,AJAP1,CA6,CAMTA1,CHD5,DNAJC11,ENO1,ERRFI1,ESPN,GPR153,GPR157,HES2,HES3,ICMT,KCNAB2,KLHL21,NOL9,NPHP4,PARK7,PER3,PHF13,PLEKHG5,RERE,RNF207,RPL22,SLC2A5,SLC2A7,SLC45A1,TAS1R1,THAP3,TNFRSF25,TNFRSF9,UTS2,VAMP3,ZBTB48"
TCGA.CM.5349	1	4746635	34544479	8346	-0.5623	SMALL-LOSS	NONFOCAL	383	Too-Many
TCGA.AG.A008.01A	1	4829860	13695547	860	-0.5723	SMALL-LOSS	NONFOCAL	112	Too-Many
TCGA.AZ.4682	1	5140225	7816542	922	-0.6915	SMALL-LOSS	NONFOCAL	21	"ACOT7,CAMTA1,CHD5,DNAJC11,ESPN,GPR153,HES2,HES3,ICMT,KCNAB2,KLHL21,NOL9,NPHP4,PHF13,PLEKHG5,RNF207,RPL22,TAS1R1,THAP3,TNFRSF25,ZBTB48"
TCGA.A6.5662	1	5229464	120523901	34447	-0.8644	SMALL-LOSS	NONFOCAL	970	Too-Many
TCGA.AG.3727	1	5288558	31546317	7353	-0.7489	SMALL-LOSS	NONFOCAL	333	Too-Many
TCGA.AA.3692	1	5402869	33427319	7570	-0.7113	SMALL-LOSS	NONFOCAL	373	Too-Many
TCGA.CM.6680	1	5520870	31377742	7211	-0.6677	SMALL-LOSS	NONFOCAL	332	Too-Many
TCGA.G4.6310	1	5549117	8222155	864	-0.9766	SMALL-LOSS	NONFOCAL	27	"ACOT7,CAMTA1,CHD5,DNAJC11,ERRFI1,ESPN,GPR153,HES2,HES3,ICMT,KCNAB2,KLHL21,NOL9,NPHP4,PARK7,PER3,PHF13,PLEKHG5,RNF207,RPL22,TAS1R1,THAP3,TNFRSF25,TNFRSF9,UTS2,VAMP3,ZBTB48"
TCGA.DM.A282.01A	1	5923298	29652046	3000	-0.6207	SMALL-LOSS	NONFOCAL	329	Too-Many
TCGA.AA.A00N.01A	1	6046173	6713922	182	-0.7211	SMALL-LOSS	NONFOCAL	20	"ACOT7,CHD5,DNAJC11,ESPN,GPR153,HES2,HES3,ICMT,KCNAB2,KLHL21,NOL9,NPHP4,PHF13,PLEKHG5,RNF207,RPL22,TAS1R1,THAP3,TNFRSF25,ZBTB48"
TCGA.DM.A28M.01A	1	6101845	29652046	2972	-0.5677	SMALL-LOSS	NONFOCAL	328	Too-Many
TCGA.A6.3808.01A	1	6154425	8029363	243	-0.905	SMALL-LOSS	NONFOCAL	25	"ACOT7,CAMTA1,CHD5,DNAJC11,ESPN,GPR153,HES2,HES3,ICMT,KCNAB2,KLHL21,NOL9,PARK7,PER3,PHF13,PLEKHG5,RNF207,RPL22,TAS1R1,THAP3,TNFRSF25,TNFRSF9,UTS2,VAMP3,ZBTB48"
TCGA.AZ.4684.01A	1	6341122	22315677	1942	-0.5908	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AA.A00Q.01A	1	6630928	8420140	123	-0.6483	SMALL-LOSS	NONFOCAL	15	"CAMTA1,DNAJC11,ERRFI1,KLHL21,PARK7,PER3,PHF13,RERE,SLC45A1,TAS1R1,THAP3,TNFRSF9,UTS2,VAMP3,ZBTB48"
TCGA.D5.5537	1	6657354	31440920	6840	-1.075	SMALL-LOSS	NONFOCAL	317	Too-Many
TCGA.EI.6511	1	7201067	145013753	33897	-0.5596	SMALL-LOSS	NONFOCAL	961	Too-Many
TCGA.AM.5820	1	7757997	28431099	5573	-0.5594	SMALL-LOSS	NONFOCAL	291	Too-Many
TCGA.AZ.4682	1	7906007	32062065	6595	-0.7118	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.AG.A026	1	7952202	120687114	33548	-0.5428	SMALL-LOSS	NONFOCAL	946	Too-Many
TCGA.AA.A00Q.01A	1	8557414	12820673	561	-0.6518	SMALL-LOSS	NONFOCAL	56	"AADACL3,AADACL4,AGTRAP,ANGPTL7,APITD1,APITD1-CORT,C1orf127,C1orf158,C1orf167,CA6,CASZ1,CLCN6,CLSTN1,CORT,CTNNBIP1,DFFA,DHRS3,DRAXIN,ENO1,EXOSC10,FBXO2,FBXO44,FBXO6,GPR157,H6PD,KIAA2013,KIF1B,LZIC,MAD2L2,MASP2,MFN2,MIIP,MTHFR,MTOR,NMNAT1,NPPA,NPPB,PEX14,PGD,PIK3CD,PLOD1,PTCHD2,RBP7,RERE,SLC25A33,SLC2A5,SLC2A7,SPSB1,SRM,TARDBP,TMEM201,TNFRSF1B,TNFRSF8,UBE4B,UBIAD1,VPS13D"
TCGA.CK.5914.01A	1	9304952	10093671	77	-0.9839	SMALL-LOSS	NONFOCAL	11	"CLSTN1,CTNNBIP1,H6PD,LZIC,NMNAT1,PIK3CD,RBP7,SLC25A33,SPSB1,TMEM201,UBE4B"
TCGA.CK.5914.01A	1	10428482	11189753	132	-1.0347	SMALL-LOSS	NONFOCAL	14	"APITD1,APITD1-CORT,C1orf127,CASZ1,CORT,DFFA,EXOSC10,KIF1B,MASP2,MTOR,PEX14,PGD,SRM,TARDBP"
TCGA.AA.3509.01A	1	10510094	60305925	5407	-0.7449	SMALL-LOSS	NONFOCAL	598	Too-Many
TCGA.AG.3909.01A	1	11300312	12091725	138	-0.5346	SMALL-LOSS	NONFOCAL	18	"AGTRAP,C1orf167,CLCN6,DRAXIN,FBXO2,FBXO44,FBXO6,KIAA2013,MAD2L2,MFN2,MIIP,MTHFR,MTOR,NPPA,NPPB,PLOD1,PTCHD2,UBIAD1"
TCGA.CK.5914.01A	1	11303131	12007979	119	-0.8449	SMALL-LOSS	NONFOCAL	16	"AGTRAP,C1orf167,CLCN6,DRAXIN,FBXO2,FBXO44,FBXO6,KIAA2013,MAD2L2,MTHFR,MTOR,NPPA,NPPB,PLOD1,PTCHD2,UBIAD1"
TCGA.G5.6572	1	12135525	145009381	32635	-0.6471	SMALL-LOSS	NONFOCAL	904	Too-Many
TCGA.AA.A00D.01A	1	12144468	12942891	117	-0.5753	SMALL-LOSS	NONFOCAL	15	"AADACL3,AADACL4,C1orf158,DHRS3,HNRNPCL1,HNRNPCL3,HNRNPCL4,PRAMEF1,PRAMEF11,PRAMEF12,PRAMEF2,PRAMEF4,TNFRSF1B,TNFRSF8,VPS13D"
TCGA.AG.A01W.01A	1	12776680	15311464	70	-0.5414	SMALL-LOSS	NONFOCAL	33	"AADACL3,C1orf158,HNRNPCL1,HNRNPCL2,HNRNPCL3,HNRNPCL4,KAZN,LOC101929983,LOC391003,LOC400736,LOC645382,LRRC38,PDPN,PRAMEF1,PRAMEF10,PRAMEF11,PRAMEF12,PRAMEF14,PRAMEF15,PRAMEF16,PRAMEF17,PRAMEF19,PRAMEF2,PRAMEF20,PRAMEF22,PRAMEF26,PRAMEF4,PRAMEF5,PRAMEF6,PRAMEF7,PRAMEF8,PRAMEF9,PRDM2"
TCGA.AF.3913	1	12852747	33637232	5624	-0.5409	SMALL-LOSS	NONFOCAL	291	Too-Many
TCGA.D5.6923	1	12858052	32231154	5475	-0.5729	SMALL-LOSS	NONFOCAL	257	Too-Many
TCGA.AA.3952	1	13793391	27635248	4235	-0.6034	SMALL-LOSS	NONFOCAL	182	Too-Many
TCGA.CM.5868	1	13803886	16005791	969	-0.8046	SMALL-LOSS	NONFOCAL	16	"AGMAT,C1orf195,CASP9,CELA2A,CELA2B,CTRC,DDI2,DNAJC16,EFHD2,FHAD1,KAZN,LRRC38,PDPN,PRDM2,RSC1A1,TMEM51"
TCGA.AG.A008.01A	1	13910319	20067220	599	-0.6268	SMALL-LOSS	NONFOCAL	67	"ACTL8,AGMAT,AKR7A2,AKR7A3,ALDH4A1,ARHGEF10L,ARHGEF19,ATP13A2,C1orf195,C1orf64,CAPZB,CASP9,CELA2A,CELA2B,CLCNKA,CLCNKB,CROCC,CTRC,DDI2,DNAJC16,EFHD2,EMC1,EPHA2,FAM131C,FAM231A,FBLIM1,FBXO42,FHAD1,HSPB7,HTR6,IFFO2,IGSF21,KAZN,KLHDC7A,MFAP2,MINOS1,MINOS1-NBL1,MRTO4,MST1L,NBL1,NBPF1,NECAP2,PADI1,PADI2,PADI3,PADI4,PADI6,PAX7,PDPN,PLEKHM2,PQLC2,PRDM2,RCC2,RSC1A1,RSG1,SDHB,SLC25A34,SPATA21,SPEN,SZRD1,TAS1R2,TMCO4,TMEM51,TMEM82,UBR4,UQCRHL,ZBTB17"
TCGA.AG.A01W.01A	1	15414165	15926065	105	-0.6237	SMALL-LOSS	NONFOCAL	11	"AGMAT,C1orf195,CASP9,CELA2A,CELA2B,CTRC,DNAJC16,EFHD2,FHAD1,KAZN,TMEM51"
TCGA.AA.A02J.01A	1	15438876	29481196	1428	-0.5961	SMALL-LOSS	NONFOCAL	213	Too-Many
TCGA.AA.A00Q.01A	1	15755062	16583054	169	-0.6089	SMALL-LOSS	NONFOCAL	25	"AGMAT,ARHGEF19,C1orf64,CASP9,CELA2A,CELA2B,CLCNKA,CLCNKB,CTRC,DDI2,DNAJC16,EFHD2,EPHA2,FAM131C,FBLIM1,FBXO42,HSPB7,PLEKHM2,RSC1A1,RSG1,SLC25A34,SPEN,TMEM82,UQCRHL,ZBTB17"
TCGA.CM.6172	1	15843243	42950207	7292	-0.7877	SMALL-LOSS	NONFOCAL	359	Too-Many
TCGA.AG.3906.01A	1	16103627	16918425	126	-0.5715	SMALL-LOSS	NONFOCAL	17	"ARHGEF19,C1orf64,CLCNKA,CLCNKB,EPHA2,FAM131C,FBLIM1,FBXO42,HSPB7,NBPF1,NECAP2,RSG1,SPATA21,SPEN,SZRD1,UQCRHL,ZBTB17"
TCGA.G4.6322	1	16579069	25356718	2757	-0.9644	SMALL-LOSS	NONFOCAL	106	Too-Many
TCGA.CA.6715	1	17282424	31402147	4151	-0.9477	SMALL-LOSS	NONFOCAL	183	Too-Many
TCGA.AA.A00Q.01A	1	17298798	89479712	4908	-0.671	SMALL-LOSS	NONFOCAL	610	Too-Many
TCGA.AA.A00D.01A	1	17395497	19561574	246	-0.5509	SMALL-LOSS	NONFOCAL	16	"ACTL8,ALDH4A1,ARHGEF10L,EMC1,IFFO2,IGSF21,KLHDC7A,PADI1,PADI2,PADI3,PADI4,PADI6,PAX7,RCC2,TAS1R2,UBR4"
TCGA.CK.5914.01A	1	17698694	19404415	115	-0.5911	SMALL-LOSS	NONFOCAL	11	"ACTL8,ALDH4A1,ARHGEF10L,IFFO2,IGSF21,KLHDC7A,PADI6,PAX7,RCC2,TAS1R2,UBR4"
TCGA.CM.6170	1	18308054	31625388	3809	-0.7637	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.AA.A00N.01A	1	19513927	20009064	89	-0.5613	SMALL-LOSS	NONFOCAL	12	"AKR7A2,AKR7A3,CAPZB,EMC1,HTR6,MINOS1,MINOS1-NBL1,MRTO4,NBL1,PQLC2,TMCO4,UBR4"
TCGA.AA.3860	1	19831938	120377128	30236	-0.6531	SMALL-LOSS	NONFOCAL	793	Too-Many
TCGA.AG.A008.01A	1	20465871	22852648	276	-0.5882	SMALL-LOSS	NONFOCAL	26	"ALPL,CAMK2N1,CDA,CDC42,CELA3A,CELA3B,DDOST,ECE1,EIF4G3,FAM43B,HP1BP3,HSPG2,KIF17,LDLRAD2,MUL1,NBPF3,PINK1,PLA2G2C,PLA2G2F,RAP1GAP,SH2D5,UBXN10,USP48,VWA5B1,WNT4,ZBTB40"
TCGA.CK.5914.01A	1	20471022	21099912	88	-0.6477	SMALL-LOSS	NONFOCAL	13	"CAMK2N1,CDA,DDOST,FAM43B,HP1BP3,KIF17,MUL1,PINK1,PLA2G2C,PLA2G2F,SH2D5,UBXN10,VWA5B1"
TCGA.AA.A00D.01A	1	22303458	23647989	94	-0.6124	SMALL-LOSS	NONFOCAL	16	"C1QA,C1QB,C1QC,C1orf234,CDC42,CELA3A,CELA3B,EPHA8,EPHB2,HNRNPR,HTR1D,KDM1A,LACTBL1,LUZP1,WNT4,ZBTB40"
TCGA.AZ.4684.01A	1	22404950	24201503	199	-0.5249	SMALL-LOSS	NONFOCAL	27	"ASAP3,C1QA,C1QB,C1QC,C1orf234,CDC42,CNR2,E2F2,EPHA8,EPHB2,FUCA1,GALE,HMGCL,HNRNPR,HTR1D,ID3,KDM1A,LACTBL1,LUZP1,LYPLA2,PITHD1,RPL11,TCEA3,TCEB3,WNT4,ZBTB40,ZNF436"
TCGA.5M.AAT5	1	22514235	36474197	3433	-0.7818	SMALL-LOSS	NONFOCAL	193	Too-Many
TCGA.AG.A008.01A	1	22925324	25598990	267	-0.6258	SMALL-LOSS	NONFOCAL	40	"ASAP3,C1QA,C1QB,C1QC,C1orf234,CLIC4,CNR2,E2F2,EPHA8,EPHB2,FUCA1,GALE,GRHL3,HMGCL,HNRNPR,HTR1D,ID3,IFNLR1,IL22RA1,KDM1A,LACTBL1,LUZP1,LYPLA2,MYOM3,NCMAP,NIPAL3,PITHD1,PNRC2,RCAN3,RHD,RPL11,RSRP1,RUNX3,SRRM1,SRSF10,STPG1,SYF2,TCEA3,TCEB3,ZNF436"
TCGA.AA.3667	1	23241600	30769306	1665	-0.7523	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.AZ.4684.01A	1	24298293	35259763	1251	-0.5778	SMALL-LOSS	NONFOCAL	151	Too-Many
TCGA.AG.A008.01A	1	25666948	34684223	998	-0.637	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.A6.6140	1	26187974	39908429	3409	-0.6826	SMALL-LOSS	NONFOCAL	184	Too-Many
TCGA.D5.6541	1	26197841	27178849	195	-0.5561	SMALL-LOSS	NONFOCAL	23	"AIM1L,ARID1A,CATSPER4,CD52,CEP85,CNKSR1,DHDDS,EXTL1,FAM110D,HMGN2,LIN28A,PAFAH2,PDIK1L,PIGV,RPS6KA1,SH3BGRL3,SLC30A2,STMN1,TRIM63,UBXN11,ZDHHC18,ZNF593,ZNF683"
TCGA.CK.5914.01A	1	26288436	26795356	130	-0.6243	SMALL-LOSS	NONFOCAL	17	"AIM1L,CATSPER4,CD52,CEP85,CNKSR1,DHDDS,EXTL1,FAM110D,LIN28A,PAFAH2,PDIK1L,SH3BGRL3,SLC30A2,TRIM63,UBXN11,ZNF593,ZNF683"
TCGA.DC.6154	1	26363600	29007728	390	-0.7819	SMALL-LOSS	NONFOCAL	59	"AHDC1,AIM1L,ARID1A,ATPIF1,CATSPER4,CD164L2,CD52,CEP85,CNKSR1,DHDDS,DNAJC8,EYA3,FAM110D,FAM46B,FAM76A,FCN3,FGR,GMEB1,GPATCH3,GPN2,GPR3,HMGN2,IFI6,KDF1,LIN28A,MAP3K6,MED18,NR0B2,NUDC,PDIK1L,PHACTR4,PIGV,PPP1R8,PTAFR,RAB42,RCC1,RPA2,RPS6KA1,SESN2,SFN,SH3BGRL3,SLC30A2,SLC9A1,SMPDL3B,STX12,SYTL1,TAF12,THEMIS2,TMEM222,TRIM63,TRNAU1AP,TRNP1,UBXN11,WASF2,WDTC1,XKR8,ZDHHC18,ZNF593,ZNF683"
TCGA.DM.A28H	1	26508292	40199853	3397	-0.6388	SMALL-LOSS	NONFOCAL	180	Too-Many
TCGA.AZ.4614	1	26566186	28084734	213	-0.8021	SMALL-LOSS	NONFOCAL	34	"AHDC1,AIM1L,ARID1A,CD164L2,CD52,CEP85,DHDDS,FAM46B,FAM76A,FCN3,FGR,GPATCH3,GPN2,GPR3,HMGN2,IFI6,KDF1,LIN28A,MAP3K6,NR0B2,NUDC,PIGV,RPS6KA1,SFN,SH3BGRL3,SLC9A1,SYTL1,TMEM222,TRNP1,UBXN11,WASF2,WDTC1,ZDHHC18,ZNF683"
TCGA.AA.3556	1	26589051	27643516	146	-0.588	SMALL-LOSS	NONFOCAL	23	"AIM1L,ARID1A,CD52,CEP85,DHDDS,FAM46B,GPATCH3,GPN2,HMGN2,KDF1,LIN28A,NR0B2,NUDC,PIGV,RPS6KA1,SFN,SH3BGRL3,SLC9A1,TRNP1,UBXN11,WDTC1,ZDHHC18,ZNF683"
TCGA.F4.6461	1	27093656	27755668	70	-0.5391	SMALL-LOSS	NONFOCAL	20	"ARID1A,CD164L2,FAM46B,FCN3,GPATCH3,GPN2,GPR3,KDF1,MAP3K6,NR0B2,NUDC,PIGV,SFN,SLC9A1,SYTL1,TMEM222,TRNP1,WASF2,WDTC1,ZDHHC18"
TCGA.CK.5914.01A	1	27099285	27338856	42	-0.8097	SMALL-LOSS	NONFOCAL	11	"ARID1A,FAM46B,GPATCH3,GPN2,KDF1,NR0B2,NUDC,PIGV,SFN,TRNP1,ZDHHC18"
TCGA.AG.3909.01A	1	27105467	28203050	150	-0.576	SMALL-LOSS	NONFOCAL	27	"AHDC1,ARID1A,CD164L2,FAM46B,FAM76A,FCN3,FGR,GPATCH3,GPN2,GPR3,IFI6,KDF1,MAP3K6,NR0B2,NUDC,PIGV,PPP1R8,SFN,SLC9A1,STX12,SYTL1,THEMIS2,TMEM222,TRNP1,WASF2,WDTC1,ZDHHC18"
TCGA.AG.A01W.01A	1	27568278	28804415	162	-0.5835	SMALL-LOSS	NONFOCAL	25	"AHDC1,ATPIF1,CD164L2,DNAJC8,EYA3,FAM76A,FCN3,FGR,GPR3,IFI6,MAP3K6,MED18,PHACTR4,PPP1R8,PTAFR,RPA2,SESN2,SMPDL3B,STX12,SYTL1,THEMIS2,TMEM222,WASF2,WDTC1,XKR8"
TCGA.AA.3952	1	27663148	30678276	679	-0.6426	SMALL-LOSS	NONFOCAL	35	"AHDC1,ATPIF1,CD164L2,DNAJC8,EPB41,EYA3,FAM76A,FCN3,FGR,GMEB1,GPR3,IFI6,MAP3K6,MECR,MED18,OPRD1,PHACTR4,PPP1R8,PTAFR,PTPRU,RAB42,RCC1,RPA2,SESN2,SMPDL3B,SRSF4,STX12,SYTL1,TAF12,THEMIS2,TMEM200B,TRNAU1AP,WASF2,XKR8,YTHDF2"
TCGA.DY.A0XA	1	27716696	37118027	2352	-0.7278	SMALL-LOSS	NONFOCAL	118	Too-Many
TCGA.D5.6932	1	27849299	32816270	1268	-0.6717	SMALL-LOSS	NONFOCAL	58	"ADGRB2,AHDC1,ATPIF1,CCDC28B,COL16A1,DCDC2B,DNAJC8,EIF3I,EPB41,EYA3,FABP3,FAM167B,FAM76A,FGR,GMEB1,HCRTR1,HDAC1,IFI6,IQCC,KHDRBS1,KPNA6,LAPTM5,LCK,MARCKSL1,MATN1,MECR,MED18,NKAIN1,OPRD1,PEF1,PHACTR4,PPP1R8,PTAFR,PTP4A2,PTPRU,PUM1,RAB42,RCC1,RPA2,SDC3,SERINC2,SESN2,SMPDL3B,SNRNP40,SPOCD1,SRSF4,STX12,TAF12,THEMIS2,TINAGL1,TMEM200B,TMEM234,TMEM39B,TRNAU1AP,TXLNA,XKR8,YTHDF2,ZCCHC17"
TCGA.AG.4021	1	28339932	31602188	960	-0.6617	SMALL-LOSS	NONFOCAL	23	"ATPIF1,DNAJC8,EPB41,EYA3,GMEB1,LAPTM5,MATN1,MECR,MED18,OPRD1,PHACTR4,PTAFR,PTPRU,PUM1,RAB42,RCC1,SDC3,SESN2,SRSF4,TAF12,TMEM200B,TRNAU1AP,YTHDF2"
TCGA.AA.A017.01A	1	28863228	32498750	241	-0.5507	SMALL-LOSS	NONFOCAL	29	"ADGRB2,COL16A1,EPB41,FABP3,GMEB1,HCRTR1,KHDRBS1,LAPTM5,MATN1,MECR,NKAIN1,OPRD1,PEF1,PTP4A2,PTPRU,PUM1,RAB42,RCC1,SDC3,SERINC2,SNRNP40,SPOCD1,SRSF4,TAF12,TINAGL1,TMEM200B,TRNAU1AP,YTHDF2,ZCCHC17"
TCGA.AG.A01W.01A	1	31982333	33131681	185	-0.6075	SMALL-LOSS	NONFOCAL	27	"ADGRB2,BSDC1,CCDC28B,COL16A1,DCDC2B,EIF3I,FAM167B,FAM229A,HCRTR1,HDAC1,IQCC,KHDRBS1,KPNA6,LCK,MARCKSL1,PEF1,PTP4A2,RBBP4,SPOCD1,TINAGL1,TMEM234,TMEM39B,TSSK3,TXLNA,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.CK.5914.01A	1	32631669	33429605	149	-0.8206	SMALL-LOSS	NONFOCAL	26	"BSDC1,CCDC28B,DCDC2B,EIF3I,FAM167B,FAM229A,FNDC5,HDAC1,HPCA,IQCC,KIAA1522,KPNA6,LCK,MARCKSL1,RBBP4,RNF19B,S100PBP,SYNC,TMEM234,TMEM54,TSSK3,TXLNA,YARS,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.AA.A00N.01A	1	32936174	33415123	72	-0.7751	SMALL-LOSS	NONFOCAL	12	"FNDC5,HPCA,KIAA1522,RBBP4,RNF19B,S100PBP,SYNC,TMEM54,YARS,ZBTB8A,ZBTB8B,ZBTB8OS"
TCGA.CM.6677	1	33347180	35919978	805	-0.6365	SMALL-LOSS	NONFOCAL	25	"A3GALT2,AK2,AZIN2,C1orf94,CSMD2,DLGAP3,GJA4,GJB3,GJB4,GJB5,HMGB4,HPCA,KIAA0319L,PHC2,RNF19B,SFPQ,SMIM12,TMEM54,TRIM62,ZMYM1,ZMYM4,ZMYM6,ZMYM6NB,ZNF362,ZSCAN20"
TCGA.AG.A01W.01A	1	36596867	38003181	124	-0.6001	SMALL-LOSS	NONFOCAL	14	"CSF3R,EVA1B,GRIK3,LSM10,MAP7D1,MEAF6,MRPS15,OSCP1,SH3D21,SNIP1,STK40,THRAP3,TRAPPC3,ZC3H12A"
TCGA.AA.A02E.01A	1	36934710	38447345	134	-0.542	SMALL-LOSS	NONFOCAL	17	"C1orf109,C1orf122,CDCA8,CSF3R,DNALI1,EPHA10,GNL2,GRIK3,INPP5B,MANEAL,MEAF6,MTF1,RSPO1,SF3A3,SNIP1,YRDC,ZC3H12A"
TCGA.A6.3808.01A	1	37499557	40312833	319	-0.5559	SMALL-LOSS	NONFOCAL	36	"AKIRIN1,BMP8A,BMP8B,C1orf109,C1orf122,CDCA8,DNALI1,EPHA10,FHL3,GJA9,GNL2,GRIK3,HEYL,HPCAL4,INPP5B,KIAA0754,MACF1,MANEAL,MEAF6,MTF1,MYCBP,NDUFS5,NT5C1A,OXCT2,PABPC4,POU3F1,PPIE,RHBDL2,RRAGC,RSPO1,SF3A3,SNIP1,TRIT1,UTP11L,YRDC,ZC3H12A"
TCGA.AA.A00Z.01A	1	38183996	247150519	232	-0.6165	SMALL-LOSS	NONFOCAL	1442	Too-Many
TCGA.D5.6536	1	40736486	43054258	671	-0.743	SMALL-LOSS	NONFOCAL	24	"CCDC30,CITED4,COL9A2,CTPS1,EDN2,EXO5,FOXJ3,FOXO6,GUCA2A,GUCA2B,HIVEP3,KCNQ4,NFYC,PPCS,RIMKLA,RIMS3,SCMH1,SLFNL1,SMAP2,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684"
TCGA.AA.3531	1	42089702	45196586	899	-0.8641	SMALL-LOSS	NONFOCAL	46	"ARTN,ATP6V0B,B4GALT2,C1orf210,C1orf228,C1orf50,CCDC23,CCDC24,CCDC30,CDC20,CFAP57,CLDN19,DMAP1,DPH2,EBNA1BP2,ELOVL1,ERI3,ERMAP,FAM183A,FOXJ3,GUCA2A,GUCA2B,HIVEP3,HYI,IPO13,KDM4A,KLF17,LOC100129924,MED8,MPL,P3H1,PPCS,PPIH,PTPRF,RIMKLA,RNF220,SLC2A1,SLC6A9,ST3GAL3,SZT2,TIE1,TMEM125,TMEM53,YBX1,ZMYND12,ZNF691"
TCGA.CK.5914.01A	1	43124858	43647193	73	-0.682	SMALL-LOSS	NONFOCAL	13	"C1orf50,CCDC23,CFAP57,CLDN19,EBNA1BP2,ERMAP,FAM183A,LOC100129924,P3H1,PPIH,SLC2A1,YBX1,ZNF691"
TCGA.D5.6536	1	44772092	89164197	14227	-0.6788	SMALL-LOSS	NONFOCAL	239	Too-Many
TCGA.AA.A00N.01A	1	44818472	45287454	69	-0.8959	SMALL-LOSS	NONFOCAL	11	"BEST4,BTBD19,C1orf228,ERI3,KIF2C,PLK3,PTCH2,RNF220,RPS8,TCTEX1D4,TMEM53"
TCGA.AA.A00N.01A	1	45553545	46179890	82	-0.8843	SMALL-LOSS	NONFOCAL	13	"AKR1A1,CCDC17,GPBP1L1,HPDL,IPP,MMACHC,MUTYH,NASP,PRDX1,TESK2,TMEM69,TOE1,ZSWIM5"
TCGA.AG.3909.01A	1	45553545	46211821	82	-0.8928	SMALL-LOSS	NONFOCAL	13	"AKR1A1,CCDC17,GPBP1L1,HPDL,IPP,MMACHC,MUTYH,NASP,PRDX1,TESK2,TMEM69,TOE1,ZSWIM5"
TCGA.DM.A288	1	47595189	116344050	21739	-0.5265	SMALL-LOSS	NONFOCAL	376	Too-Many
TCGA.AA.3549	1	47861162	51449574	898	-0.7539	SMALL-LOSS	NONFOCAL	11	"AGBL4,BEND5,CDKN2C,DMRTA2,ELAVL4,FAF1,FOXD2,FOXE3,SLC5A9,SPATA6,TRABD2B"
TCGA.AA.A00D.01A	1	49193520	52490115	116	-0.5687	SMALL-LOSS	NONFOCAL	14	"AGBL4,BEND5,C1orf185,CDKN2C,DMRTA2,ELAVL4,EPS15,FAF1,NRD1,OSBPL9,RAB3B,RNF11,TTC39A,TXNDC12"
TCGA.AA.3531	1	50110849	54292600	799	-0.8278	SMALL-LOSS	NONFOCAL	36	"AGBL4,BTF3L4,C1orf123,C1orf185,CC2D1B,CDKN2C,COA7,CPT2,DMRTA2,DMRTB1,ECHDC2,ELAVL4,EPS15,FAF1,FAM159A,GLIS1,GPX7,KTI12,LRP8,MAGOH,NDC1,NRD1,ORC1,OSBPL9,PODN,PRPF38A,RAB3B,RNF11,SCP2,SLC1A7,TTC39A,TXNDC12,ZCCHC11,ZFYVE9,ZYG11A,ZYG11B"
TCGA.F4.6460	1	50391139	114776304	20464	-0.8044	SMALL-LOSS	NONFOCAL	352	Too-Many
TCGA.DM.A1DB	1	51409655	81796467	10154	-0.7175	SMALL-LOSS	NONFOCAL	147	Too-Many
TCGA.DY.A1H8	1	52237188	80596274	9649	-0.8534	SMALL-LOSS	NONFOCAL	141	Too-Many
TCGA.AG.A01W.01A	1	54070701	55026235	150	-0.6623	SMALL-LOSS	NONFOCAL	14	"ACOT11,CDCP2,CYB5RL,DIO1,GLIS1,HSPB11,LDLRAD1,LRRC42,MRPL37,NDC1,SSBP3,TCEANC2,TMEM59,YIPF1"
TCGA.AA.3531	1	55207753	58934241	1811	-0.8562	SMALL-LOSS	NONFOCAL	15	"BSND,C1orf168,C1orf177,C8A,C8B,DAB1,DHCR24,PARS2,PCSK9,PPAP2B,PRKAA2,TMEM61,TTC22,TTC4,USP24"
TCGA.A6.2671	1	55416826	119750643	20900	-0.6742	SMALL-LOSS	NONFOCAL	330	Too-Many
TCGA.AG.A00Y.01A	1	55557646	108700042	2263	-0.6171	SMALL-LOSS	NONFOCAL	206	Too-Many
TCGA.DM.A1HA	1	55577015	118887436	20608	-0.9179	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.CM.6677	1	55647271	69625047	5510	-0.6122	SMALL-LOSS	NONFOCAL	55	"AK4,ALG6,ANGPTL3,ATG4C,C1orf141,C1orf168,C1orf87,C8A,C8B,CACHD1,CYP2J2,DAB1,DEPDC1,DIRAS3,DNAJC6,DOCK7,EFCAB7,FGGY,FOXD3,GADD45A,GNG12,HOOK1,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,MIER1,MYSM1,NFIA,OMA1,PDE4B,PGM1,PPAP2B,PRKAA2,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,TACSTD2,TCTEX1D1,TM2D1,UBE2U,USP1,USP24,WDR78,WLS"
TCGA.DM.A28H	1	56494018	62375976	2479	-0.6202	SMALL-LOSS	NONFOCAL	17	"C1orf168,C1orf87,C8A,C8B,CYP2J2,DAB1,FGGY,HOOK1,INADL,JUN,MYSM1,NFIA,OMA1,PPAP2B,PRKAA2,TACSTD2,TM2D1"
TCGA.AA.A00D.01A	1	56989912	74957749	681	-0.5691	SMALL-LOSS	NONFOCAL	67	"AK4,ALG6,ANGPTL3,ANKRD13C,ATG4C,C1orf141,C1orf168,C1orf87,C8A,C8B,CACHD1,CTH,CYP2J2,DAB1,DEPDC1,DIRAS3,DNAJC6,DOCK7,EFCAB7,FGGY,FOXD3,FPGT,FPGT-TNNI3K,GADD45A,GNG12,HHLA3,HOOK1,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,JUN,KANK4,L1TD1,LEPR,LEPROT,LRRC40,LRRC7,LRRIQ3,MIER1,MYSM1,NEGR1,NFIA,OMA1,PDE4B,PGM1,PPAP2B,PRKAA2,PTGER3,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SRSF11,TACSTD2,TCTEX1D1,TM2D1,TNNI3K,UBE2U,USP1,WDR78,WLS,ZRANB2"
TCGA.AA.3531	1	59346221	80596898	6861	-0.8263	SMALL-LOSS	NONFOCAL	81	"ACADM,ADGRL4,AK4,AK5,ALG6,ANGPTL3,ANKRD13C,ASB17,ATG4C,C1orf141,C1orf87,CACHD1,CRYZ,CTH,CYP2J2,DEPDC1,DIRAS3,DNAJB4,DNAJC6,DOCK7,EFCAB7,ERICH3,FAM73A,FGGY,FOXD3,FPGT,FPGT-TNNI3K,FUBP1,GADD45A,GIPC2,GNG12,HHLA3,HOOK1,IFI44,IFI44L,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,KANK4,L1TD1,LEPR,LEPROT,LHX8,LRRC40,LRRC7,LRRIQ3,MIER1,MSH4,NEGR1,NEXN,NFIA,PDE4B,PGM1,PIGK,PTGER3,PTGFR,RABGGTB,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TCTEX1D1,TM2D1,TNNI3K,TYW3,UBE2U,USP1,USP33,WDR78,WLS,ZRANB2,ZZZ3"
TCGA.EI.6509	1	61676931	85537889	7811	-0.74	SMALL-LOSS	NONFOCAL	90	"ACADM,ADGRL2,ADGRL4,AK4,AK5,ALG6,ANGPTL3,ANKRD13C,ASB17,ATG4C,C1orf141,CACHD1,CRYZ,CTBS,CTH,DEPDC1,DIRAS3,DNAJB4,DNAJC6,DNASE2B,DOCK7,EFCAB7,ERICH3,FAM73A,FOXD3,FPGT,FPGT-TNNI3K,FUBP1,GADD45A,GIPC2,GNG12,GNG5,HHLA3,IFI44,IFI44L,IL12RB2,IL23R,INADL,INSL5,ITGB3BP,JAK1,KANK4,L1TD1,LEPR,LEPROT,LHX8,LPAR3,LRRC40,LRRC7,LRRIQ3,MCOLN2,MCOLN3,MIER1,MSH4,NEGR1,NEXN,NFIA,PDE4B,PGM1,PIGK,PRKACB,PTGER3,PTGFR,RABGGTB,RAVER2,ROR1,RPE65,RPF1,SAMD13,SERBP1,SGIP1,SLC35D1,SLC44A5,SRSF11,SSX2IP,ST6GALNAC3,ST6GALNAC5,TCTEX1D1,TM2D1,TNNI3K,TTLL7,TYW3,UBE2U,USP1,USP33,WDR63,WDR78,WLS,ZRANB2,ZZZ3"
TCGA.DM.A28H	1	62610237	65250981	990	-0.5978	SMALL-LOSS	NONFOCAL	16	"ALG6,ANGPTL3,ATG4C,CACHD1,DOCK7,EFCAB7,FOXD3,INADL,ITGB3BP,KANK4,L1TD1,PGM1,RAVER2,ROR1,UBE2U,USP1"
TCGA.AG.3594	1	63378092	70421417	2533	-0.5737	SMALL-LOSS	NONFOCAL	32	"AK4,ALG6,C1orf141,CACHD1,DEPDC1,DIRAS3,DNAJC6,EFCAB7,FOXD3,GADD45A,GNG12,IL12RB2,IL23R,INSL5,ITGB3BP,JAK1,LEPR,LEPROT,LRRC7,MIER1,PDE4B,PGM1,RAVER2,ROR1,RPE65,SERBP1,SGIP1,SLC35D1,TCTEX1D1,UBE2U,WDR78,WLS"
TCGA.5M.AAT5	1	63807347	105180372	12716	-0.7179	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AA.3509.01A	1	64011574	66037992	132	-0.6148	SMALL-LOSS	NONFOCAL	11	"AK4,CACHD1,DNAJC6,EFCAB7,JAK1,LEPR,LEPROT,PGM1,RAVER2,ROR1,UBE2U"
TCGA.DM.A28H	1	65311261	69068830	1449	-0.5815	SMALL-LOSS	NONFOCAL	22	"AK4,C1orf141,DEPDC1,DIRAS3,DNAJC6,GADD45A,GNG12,IL12RB2,IL23R,INSL5,JAK1,LEPR,LEPROT,MIER1,PDE4B,RPE65,SERBP1,SGIP1,SLC35D1,TCTEX1D1,WDR78,WLS"
TCGA.D5.5540	1	65420898	71088105	1903	-0.7966	SMALL-LOSS	NONFOCAL	28	"AK4,ANKRD13C,C1orf141,CTH,DEPDC1,DIRAS3,DNAJC6,GADD45A,GNG12,HHLA3,IL12RB2,IL23R,INSL5,JAK1,LEPR,LEPROT,LRRC40,LRRC7,MIER1,PDE4B,RPE65,SERBP1,SGIP1,SLC35D1,SRSF11,TCTEX1D1,WDR78,WLS"
TCGA.AA.3549	1	65852063	73042516	2297	-0.7072	SMALL-LOSS	NONFOCAL	29	"ANKRD13C,C1orf141,CTH,DEPDC1,DIRAS3,DNAJC6,GADD45A,GNG12,HHLA3,IL12RB2,IL23R,INSL5,LEPR,LEPROT,LRRC40,LRRC7,MIER1,NEGR1,PDE4B,PTGER3,RPE65,SERBP1,SGIP1,SLC35D1,SRSF11,TCTEX1D1,WDR78,WLS,ZRANB2"
TCGA.AA.3952	1	66000532	117157371	15860	-0.5641	SMALL-LOSS	NONFOCAL	276	Too-Many
TCGA.AA.3867	1	67037897	73012603	1804	-0.5955	SMALL-LOSS	NONFOCAL	25	"ANKRD13C,C1orf141,CTH,DEPDC1,DIRAS3,GADD45A,GNG12,HHLA3,IL12RB2,IL23R,INSL5,LRRC40,LRRC7,MIER1,NEGR1,PTGER3,RPE65,SERBP1,SGIP1,SLC35D1,SRSF11,TCTEX1D1,WDR78,WLS,ZRANB2"
TCGA.AZ.6600	1	69588192	81720232	3514	-0.7105	SMALL-LOSS	NONFOCAL	37	"ACADM,ADGRL4,AK5,ANKRD13C,ASB17,CRYZ,CTH,DNAJB4,ERICH3,FAM73A,FPGT,FPGT-TNNI3K,FUBP1,GIPC2,HHLA3,IFI44,IFI44L,LHX8,LRRC40,LRRC7,LRRIQ3,MSH4,NEGR1,NEXN,PIGK,PTGER3,PTGFR,RABGGTB,SLC44A5,SRSF11,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,USP33,ZRANB2,ZZZ3"
TCGA.DM.A28H	1	70377903	76724651	1733	-0.6164	SMALL-LOSS	NONFOCAL	23	"ACADM,ANKRD13C,ASB17,CRYZ,CTH,ERICH3,FPGT,FPGT-TNNI3K,HHLA3,LHX8,LRRC40,LRRC7,LRRIQ3,MSH4,NEGR1,PTGER3,RABGGTB,SLC44A5,SRSF11,ST6GALNAC3,TNNI3K,TYW3,ZRANB2"
TCGA.D5.5540	1	71131338	145394954	15246	-0.8397	SMALL-LOSS	NONFOCAL	290	Too-Many
TCGA.F4.6808	1	71309121	115234732	13297	-0.6132	SMALL-LOSS	NONFOCAL	237	Too-Many
TCGA.AA.3867	1	73018522	145013753	14732	-0.5993	SMALL-LOSS	NONFOCAL	284	Too-Many
TCGA.AA.3549	1	74544310	79519718	1505	-0.7062	SMALL-LOSS	NONFOCAL	28	"ACADM,ADGRL4,AK5,ASB17,CRYZ,DNAJB4,ERICH3,FAM73A,FPGT,FPGT-TNNI3K,FUBP1,GIPC2,IFI44,IFI44L,LHX8,LRRIQ3,MSH4,NEXN,PIGK,PTGFR,RABGGTB,SLC44A5,ST6GALNAC3,ST6GALNAC5,TNNI3K,TYW3,USP33,ZZZ3"
TCGA.DM.A28H	1	76812061	81601169	1492	-0.6251	SMALL-LOSS	NONFOCAL	15	"ADGRL4,AK5,DNAJB4,FAM73A,FUBP1,GIPC2,IFI44,IFI44L,NEXN,PIGK,PTGFR,ST6GALNAC3,ST6GALNAC5,USP33,ZZZ3"
TCGA.AA.A00L.01A	1	77528663	91850667	503	-0.5692	SMALL-LOSS	NONFOCAL	61	"ADGRL2,ADGRL4,AK5,BARHL2,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNAJB4,DNASE2B,FAM73A,FUBP1,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GIPC2,GNG5,GTF2B,HFM1,HS2ST1,IFI44,IFI44L,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,NEXN,ODF2L,PIGK,PKN2,PRKACB,PTGFR,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,ST6GALNAC5,SYDE2,TTLL7,USP33,WDR63,ZNF326,ZNF644,ZNHIT6,ZZZ3"
TCGA.AA.3872	1	78426283	88701590	3471	-0.8303	SMALL-LOSS	NONFOCAL	36	"ADGRL2,ADGRL4,BCL10,C1orf52,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNAJB4,DNASE2B,FUBP1,GIPC2,GNG5,HS2ST1,IFI44,IFI44L,LMO4,LOC101927844,LPAR3,MCOLN2,MCOLN3,ODF2L,PRKACB,PTGFR,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TTLL7,WDR63,ZNHIT6"
TCGA.AA.3549	1	81546069	86667672	1855	-0.7183	SMALL-LOSS	NONFOCAL	20	"ADGRL2,BCL10,C1orf52,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GNG5,LPAR3,MCOLN2,MCOLN3,PRKACB,RPF1,SAMD13,SSX2IP,SYDE2,TTLL7,WDR63,ZNHIT6"
TCGA.AG.3732	1	82127428	92055865	3264	-0.5548	SMALL-LOSS	NONFOCAL	48	"ADGRL2,BARHL2,BCL10,C1orf52,CCBL2,CDC7,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GNG5,GTF2B,HFM1,HS2ST1,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,ODF2L,PKN2,PRKACB,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TTLL7,WDR63,ZNF326,ZNF644,ZNHIT6"
TCGA.DM.A1DB	1	82548785	89489977	2371	-0.706	SMALL-LOSS	NONFOCAL	33	"BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GBP3,GNG5,GTF2B,HS2ST1,LMO4,LOC101927844,LPAR3,MCOLN2,MCOLN3,ODF2L,PKN2,PRKACB,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,TTLL7,WDR63,ZNHIT6"
TCGA.AA.A00D.01A	1	84644794	91866503	345	-0.5228	SMALL-LOSS	NONFOCAL	45	"BARHL2,BCL10,C1orf52,CCBL2,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GBP1,GBP2,GBP3,GBP4,GBP5,GBP6,GBP7,GNG5,GTF2B,HFM1,HS2ST1,LMO4,LOC101927844,LPAR3,LRRC8B,LRRC8C,LRRC8D,MCOLN2,MCOLN3,ODF2L,PKN2,PRKACB,RBMXL1,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,WDR63,ZNF326,ZNF644,ZNHIT6"
TCGA.DM.A28H	1	84648584	89389334	1620	-0.6158	SMALL-LOSS	NONFOCAL	29	"BCL10,C1orf52,CLCA1,CLCA2,CLCA4,COL24A1,CTBS,CYR61,DDAH1,DNASE2B,GNG5,GTF2B,HS2ST1,LMO4,LOC101927844,LPAR3,MCOLN2,MCOLN3,ODF2L,PKN2,PRKACB,RPF1,SAMD13,SEP15,SH3GLB1,SSX2IP,SYDE2,WDR63,ZNHIT6"
TCGA.AF.2693	1	85303800	89164596	1307	-0.5431	SMALL-LOSS	NONFOCAL	21	"BCL10,C1orf52,CLCA1,CLCA2,CLCA4,COL24A1,CYR61,DDAH1,HS2ST1,LMO4,LOC101927844,LPAR3,MCOLN2,MCOLN3,ODF2L,PKN2,SEP15,SH3GLB1,SYDE2,WDR63,ZNHIT6"
TCGA.EI.6509	1	85547269	118281893	10045	-0.7568	SMALL-LOSS	NONFOCAL	218	Too-Many
TCGA.AA.3561	1	88337669	118697078	9205	-0.9368	SMALL-LOSS	NONFOCAL	204	Too-Many
TCGA.DM.A1DB	1	90101325	104902498	4189	-0.7102	SMALL-LOSS	NONFOCAL	69	"ABCA4,ABCD3,AGL,ALG14,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,ARHGAP29,BARHL2,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,CDC14A,CDC7,CNN3,COL11A1,DBT,DNTTIP2,DPH5,DPYD,DR1,EPHX4,EVI5,EXTL2,F3,FAM69A,FNBP1L,FRRS1,GCLM,GFI1,GLMN,GPR88,HFM1,HIAT1,KIAA1107,LOC101928436,LPPR4,LPPR5,LRRC39,LRRC8C,LRRC8D,MTF2,OLFM3,PALMD,PTBP2,RNPC3,RPAP2,RPL5,RTCA,RWDD3,S1PR1,SASS6,SETSIP,SLC30A7,SLC35A3,SLC44A3,SNX7,TGFBR3,TMED5,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1,ZNF326,ZNF644"
TCGA.AZ.4682	1	90578494	92831568	689	-0.688	SMALL-LOSS	NONFOCAL	13	"BARHL2,BRDT,BTBD8,C1orf146,CDC7,EPHX4,GLMN,HFM1,KIAA1107,RPAP2,SETSIP,TGFBR3,ZNF644"
TCGA.D5.6536	1	91406676	111475840	5766	-0.6641	SMALL-LOSS	NONFOCAL	119	Too-Many
TCGA.AA.3509.01A	1	91844593	93987569	196	-0.6289	SMALL-LOSS	NONFOCAL	20	"BRDT,BTBD8,C1orf146,CCDC18,CDC7,DR1,EPHX4,EVI5,FAM69A,FNBP1L,GFI1,GLMN,HFM1,KIAA1107,MTF2,RPAP2,RPL5,SETSIP,TGFBR3,TMED5"
TCGA.AA.A00Q.01A	1	92479698	101354210	460	-0.7509	SMALL-LOSS	NONFOCAL	49	"ABCA4,ABCD3,AGL,ALG14,ARHGAP29,BCAR3,BRDT,BTBD8,C1orf146,CCDC18,CDC14A,CNN3,DBT,DNTTIP2,DPYD,DR1,EPHX4,EVI5,EXTL2,F3,FAM69A,FNBP1L,FRRS1,GCLM,GFI1,GLMN,GPR88,HIAT1,KIAA1107,LPPR4,LPPR5,LRRC39,MTF2,PALMD,PTBP2,RPAP2,RPL5,RTCA,RWDD3,SASS6,SETSIP,SLC35A3,SLC44A3,SNX7,TMED5,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
TCGA.AA.A00A.01A	1	93583883	97278800	168	-0.5246	SMALL-LOSS	NONFOCAL	19	"ABCA4,ABCD3,ALG14,ARHGAP29,BCAR3,CCDC18,CNN3,DNTTIP2,DR1,F3,FNBP1L,GCLM,MTF2,PTBP2,RWDD3,SLC44A3,TMED5,TMEM56,TMEM56-RWDD3"
TCGA.AG.4021	1	94195895	114959539	6324	-0.5702	SMALL-LOSS	NONFOCAL	137	Too-Many
TCGA.AA.A00D.01A	1	94649660	103484293	355	-0.5295	SMALL-LOSS	NONFOCAL	33	"ABCD3,AGL,ALG14,ARHGAP29,CDC14A,CNN3,COL11A1,DBT,DPH5,DPYD,EXTL2,F3,FRRS1,GPR88,HIAT1,LPPR4,LPPR5,LRRC39,OLFM3,PALMD,PTBP2,RTCA,RWDD3,S1PR1,SASS6,SLC30A7,SLC35A3,SLC44A3,SNX7,TMEM56,TMEM56-RWDD3,TRMT13,VCAM1"
TCGA.AA.3549	1	97038068	145013753	7212	-0.7056	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AZ.4615	1	97290198	108238092	3045	-0.6522	SMALL-LOSS	NONFOCAL	33	"AGL,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,CDC14A,COL11A1,DBT,DPH5,DPYD,EXTL2,FRRS1,GPR88,HIAT1,LOC101928436,LPPR4,LPPR5,LRRC39,NTNG1,OLFM3,PALMD,PRMT6,RNPC3,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,SNX7,TRMT13,VAV3,VCAM1"
TCGA.D5.5539	1	100274669	103757336	1061	-0.8539	SMALL-LOSS	NONFOCAL	17	"AGL,CDC14A,COL11A1,DBT,DPH5,EXTL2,GPR88,HIAT1,LRRC39,OLFM3,RTCA,S1PR1,SASS6,SLC30A7,SLC35A3,TRMT13,VCAM1"
TCGA.AA.A00A.01A	1	100606356	117963135	1130	-1.0324	SMALL-LOSS	NONFOCAL	139	Too-Many
TCGA.AA.A00Q.01A	1	101427338	109968847	327	-0.7258	SMALL-LOSS	NONFOCAL	37	"AKNAD1,AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,C1orf194,CELSR2,CLCC1,COL11A1,DPH5,FAM102B,FNDC7,GPSM2,HENMT1,KIAA1324,LOC101928436,MYBPHL,NBPF4,NBPF6,NTNG1,OLFM3,PRMT6,PRPF38B,PSMA5,PSRC1,RNPC3,S1PR1,SARS,SLC25A24,SLC30A7,SORT1,STXBP3,TAF13,TMEM167B,VAV3,WDR47"
TCGA.AA.3811	1	101896849	108285387	1768	-0.6709	SMALL-LOSS	NONFOCAL	12	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,NTNG1,OLFM3,PRMT6,RNPC3,VAV3"
TCGA.AA.3844	1	101926089	108270129	1754	-0.5743	SMALL-LOSS	NONFOCAL	12	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,NTNG1,OLFM3,PRMT6,RNPC3,VAV3"
TCGA.AA.3850	1	101991398	108238092	1706	-0.71475	SMALL-LOSS	NONFOCAL	12	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,NTNG1,OLFM3,PRMT6,RNPC3,VAV3"
TCGA.AG.3584	1	102520677	118359364	4921	-0.6963	SMALL-LOSS	NONFOCAL	128	Too-Many
TCGA.AA.A00D.01A	1	103487198	108319784	54	-0.7673	SMALL-LOSS	NONFOCAL	11	"AMY1A,AMY1B,AMY1C,AMY2A,AMY2B,COL11A1,LOC101928436,NTNG1,PRMT6,RNPC3,VAV3"
TCGA.AG.3881	1	105716898	109737062	1199	-0.9003	SMALL-LOSS	NONFOCAL	19	"AKNAD1,C1orf194,CLCC1,FAM102B,FNDC7,GPSM2,HENMT1,KIAA1324,NBPF4,NBPF6,NTNG1,PRMT6,PRPF38B,SLC25A24,STXBP3,TAF13,TMEM167B,VAV3,WDR47"
TCGA.AA.A01Q.01A	1	108417476	109707094	118	-0.6163	SMALL-LOSS	NONFOCAL	17	"AKNAD1,C1orf194,CLCC1,FAM102B,FNDC7,GPSM2,HENMT1,KIAA1324,NBPF4,NBPF6,PRPF38B,SLC25A24,STXBP3,TAF13,TMEM167B,VAV3,WDR47"
TCGA.AG.3594	1	108657933	119761037	3608	-0.6048	SMALL-LOSS	NONFOCAL	122	Too-Many
TCGA.AZ.4615	1	109150719	118481275	3198	-0.6483	SMALL-LOSS	NONFOCAL	116	Too-Many
TCGA.AA.3509.01A	1	109325025	111506180	368	-0.7678	SMALL-LOSS	NONFOCAL	45	"AHCYL1,AKNAD1,ALX3,AMIGO1,AMPD2,ATXN7L2,C1orf194,CD53,CELSR2,CLCC1,CSF1,CYB561D1,EPS8L3,GNAI3,GNAT2,GPR61,GPSM2,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,KIAA1324,LAMTOR5,LRIF1,MYBPHL,PROK1,PSMA5,PSRC1,RBM15,SARS,SLC16A4,SLC6A17,SORT1,STRIP1,STXBP3,SYPL2,TAF13,TMEM167B,UBL4B,WDR47"
TCGA.EI.6883	1	110059492	110880585	277	-0.7148	SMALL-LOSS	NONFOCAL	17	"AHCYL1,ALX3,AMPD2,CSF1,EPS8L3,GNAI3,GNAT2,GPR61,GSTM1,GSTM2,GSTM3,GSTM4,GSTM5,KCNC4,SLC6A17,STRIP1,UBL4B"
TCGA.AA.A00Q.01A	1	110256011	111690315	127	-0.7782	SMALL-LOSS	NONFOCAL	21	"AHCYL1,ALX3,CD53,CEPT1,CSF1,DRAM2,EPS8L3,GSTM3,GSTM5,KCNA10,KCNA2,KCNA3,KCNC4,LAMTOR5,LRIF1,PROK1,RBM15,SLC16A4,SLC6A17,STRIP1,UBL4B"
TCGA.5M.AAT5	1	110931018	145382123	3376	-0.7423	SMALL-LOSS	NONFOCAL	102	Too-Many
TCGA.AA.A01Q.01A	1	111061043	113232485	168	-0.583	SMALL-LOSS	NONFOCAL	27	"ADORA3,ATP5F1,C1orf162,CAPZA1,CD53,CEPT1,CHI3L2,CHIA,CTTNBP2NL,DDX20,DENND2D,DRAM2,FAM212B,KCNA10,KCNA2,KCNA3,KCND3,LOC643355,LRIF1,MOV10,OVGP1,PIFO,RAP1A,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AA.3509.01A	1	111730176	113160547	129	-0.5987	SMALL-LOSS	NONFOCAL	18	"ADORA3,ATP5F1,C1orf162,CHI3L2,CHIA,CTTNBP2NL,DDX20,DENND2D,FAM212B,KCND3,LOC643355,OVGP1,PIFO,RAP1A,ST7L,TMIGD3,WDR77,WNT2B"
TCGA.AG.3881	1	111781885	119818922	2707	-0.848	SMALL-LOSS	NONFOCAL	67	"ADORA3,AMPD1,AP4B1,ATP1A1,ATP5F1,BCAS2,BCL2L15,C1orf137,C1orf162,CAPZA1,CASQ2,CD101,CD2,CD58,CHI3L2,CHIA,CSDE1,CTTNBP2NL,DCLRE1B,DDX20,DENND2C,FAM19A3,FAM212B,FAM46C,GDAP2,HIPK1,IGSF3,KCND3,LOC643355,LRIG2,MAB21L3,MAGI3,MAN1A2,MOV10,NGF,NHLH2,NRAS,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PTGFRN,PTPN22,RAP1A,RHOC,RSBN1,SIKE1,SLC16A1,SLC22A15,SPAG17,ST7L,SYCP1,SYT6,TBX15,TMIGD3,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WARS2,WDR3,WDR77,WNT2B"
TCGA.AA.A00Q.01A	1	111783898	115399146	354	-0.7685	SMALL-LOSS	NONFOCAL	42	"ADORA3,AMPD1,AP4B1,ATP5F1,BCAS2,BCL2L15,C1orf162,CAPZA1,CHI3L2,CHIA,CSDE1,CTTNBP2NL,DCLRE1B,DDX20,DENND2C,FAM19A3,FAM212B,HIPK1,KCND3,LOC643355,LRIG2,MAGI3,MOV10,NRAS,OLFML3,OVGP1,PHTF1,PIFO,PPM1J,PTPN22,RAP1A,RHOC,RSBN1,SIKE1,SLC16A1,ST7L,SYCP1,SYT6,TMIGD3,TRIM33,WDR77,WNT2B"
TCGA.F4.6461	1	112438480	113658886	429	-0.5731	SMALL-LOSS	NONFOCAL	12	"CAPZA1,CTTNBP2NL,FAM19A3,KCND3,LOC643355,LRIG2,MOV10,PPM1J,RHOC,SLC16A1,ST7L,WNT2B"
TCGA.DY.A1DC	1	112536722	120687114	2580	-0.6554	SMALL-LOSS	NONFOCAL	64	"ADAM30,AMPD1,AP4B1,ATP1A1,BCAS2,BCL2L15,C1orf137,CAPZA1,CASQ2,CD101,CD2,CD58,CSDE1,CTTNBP2NL,DCLRE1B,DENND2C,FAM19A3,FAM46C,GDAP2,HAO2,HIPK1,HMGCS2,HSD3B1,HSD3B2,IGSF3,LOC643355,LRIG2,MAB21L3,MAGI3,MAN1A2,MOV10,NBPF7,NGF,NHLH2,NOTCH2,NRAS,OLFML3,PHGDH,PHTF1,PPM1J,PTGFRN,PTPN22,REG4,RHOC,RSBN1,SIKE1,SLC16A1,SLC22A15,SPAG17,ST7L,SYCP1,SYT6,TBX15,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WARS2,WDR3,WNT2B,ZNF697"
TCGA.EI.6883	1	113234178	115427217	496	-0.6546	SMALL-LOSS	NONFOCAL	24	"AMPD1,AP4B1,BCAS2,BCL2L15,CSDE1,DCLRE1B,DENND2C,FAM19A3,HIPK1,LRIG2,MAGI3,MOV10,NRAS,OLFML3,PHTF1,PPM1J,PTPN22,RHOC,RSBN1,SIKE1,SLC16A1,SYCP1,SYT6,TRIM33"
TCGA.AA.A01Q.01A	1	113456506	117602885	339	-0.555	SMALL-LOSS	NONFOCAL	35	"AMPD1,AP4B1,ATP1A1,BCAS2,BCL2L15,C1orf137,CASQ2,CD101,CD2,CD58,CSDE1,DCLRE1B,DENND2C,HIPK1,IGSF3,LRIG2,MAB21L3,MAGI3,NGF,NHLH2,NRAS,OLFML3,PHTF1,PTGFRN,PTPN22,RSBN1,SIKE1,SLC16A1,SLC22A15,SYCP1,SYT6,TRIM33,TSHB,TSPAN2,VANGL1"
TCGA.F4.6460	1	114807558	145009381	1940	-0.8437	SMALL-LOSS	NONFOCAL	54	"ADAM30,AMPD1,ATP1A1,BCAS2,C1orf137,CASQ2,CD101,CD2,CD58,CSDE1,DENND2C,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,IGSF3,MAB21L3,MAN1A2,NBPF20,NBPF7,NBPF8,NBPF9,NGF,NHLH2,NOTCH2,NRAS,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,PTGFRN,REG4,SIKE1,SLC22A15,SPAG17,SYCP1,TBX15,TRIM33,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.G4.6322	1	115352042	144938878	1840	-0.8693	SMALL-LOSS	NONFOCAL	47	"ADAM30,ATP1A1,C1orf137,CASQ2,CD101,CD2,CD58,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,IGSF3,MAB21L3,MAN1A2,NBPF20,NBPF7,NBPF8,NBPF9,NGF,NHLH2,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,PTGFRN,REG4,SLC22A15,SPAG17,SYCP1,TBX15,TRIM45,TSHB,TSPAN2,TTF2,VANGL1,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AA.A00K.01A	1	116385314	144946575	343	-0.553	SMALL-LOSS	NONFOCAL	40	"ADAM30,ATP1A1,C1orf137,CD101,CD2,CD58,FAM46C,FAM72B,FAM72C,FAM72D,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,IGSF3,MAB21L3,MAN1A2,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,PTGFRN,REG4,SLC22A15,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AA.A00Q.01A	1	116670036	120351261	249	-0.7935	SMALL-LOSS	NONFOCAL	25	"ATP1A1,C1orf137,CD101,CD2,CD58,FAM46C,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,IGSF3,MAB21L3,MAN1A2,PHGDH,PTGFRN,REG4,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AA.A00D.01A	1	117127239	120930008	257	-0.6781	SMALL-LOSS	NONFOCAL	27	"ADAM30,C1orf137,CD101,CD2,FAM46C,FAM72B,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,IGSF3,MAN1A2,NBPF7,NOTCH2,PHGDH,PTGFRN,REG4,SPAG17,TBX15,TRIM45,TTF2,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AA.A01Q.01A	1	117663319	120930008	200	-0.6173	SMALL-LOSS	NONFOCAL	21	"ADAM30,FAM46C,FAM72B,FCGR1B,GDAP2,HAO2,HMGCS2,HSD3B1,HSD3B2,MAN1A2,NBPF7,NOTCH2,PHGDH,REG4,SPAG17,TBX15,TRIM45,VTCN1,WARS2,WDR3,ZNF697"
TCGA.AZ.4615	1	119688489	145394954	346	-0.6686	SMALL-LOSS	NONFOCAL	24	"ADAM30,FAM72B,FAM72C,FAM72D,FCGR1B,HAO2,HMGCS2,HSD3B1,HSD3B2,NBPF10,NBPF20,NBPF7,NBPF8,NBPF9,NOTCH2,NOTCH2NL,PDE4DIP,PHGDH,PPIAL4A,PPIAL4C,PPIAL4G,REG4,SEC22B,ZNF697"
TCGA.AA.A00N.01A	1	120572472	144828561	24	-0.903	SMALL-LOSS	NONFOCAL	11	"FAM72B,FAM72C,FAM72D,FCGR1B,NBPF20,NBPF8,NBPF9,NOTCH2,PPIAL4A,PPIAL4C,PPIAL4G"
TCGA.AG.3594	1	121213286	149979409	463	-0.5758	SMALL-LOSS	NONFOCAL	60	"ACP6,ANKRD34A,ANKRD35,BCL9,BOLA1,CD160,CHD1L,FAM72C,FAM72D,FCGR1A,FMO5,GJA5,GJA8,GPR89A,GPR89B,HFE2,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,ITGA10,LIX1L,MTMR11,NBPF10,NBPF11,NBPF12,NBPF14,NBPF15,NBPF20,NBPF8,NBPF9,NOTCH2NL,NUDT17,OTUD7B,PDE4DIP,PDZK1,PEX11B,PIAS3,POLR3C,POLR3GL,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,PPIAL4G,PRKAB2,RBM8A,RNF115,SEC22B,SF3B4,SV2A,TXNIP"
TCGA.AA.A01C.01A	1	145414749	145606222	91	-0.6065	SMALL-LOSS	NONFOCAL	14	"ANKRD34A,ANKRD35,HFE2,ITGA10,LIX1L,NBPF10,NBPF20,NUDT17,PEX11B,PIAS3,POLR3C,POLR3GL,RBM8A,TXNIP"
TCGA.AA.A01C.01A	1	145611192	152060435	620	-0.5448	SMALL-LOSS	NONFOCAL	103	Too-Many
TCGA.AG.A016.01A	1	147131469	149895392	42	-0.5312	SMALL-LOSS	NONFOCAL	29	"ACP6,BOLA1,FCGR1A,GJA5,GJA8,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SF3B4,SV2A"
TCGA.AA.A00N.01A	1	147408701	149783776	18	-1.2396	SMALL-LOSS	NONFOCAL	13	"FCGR1A,GPR89B,HIST2H2BF,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F"
TCGA.AG.3909.01A	1	147408701	149884780	36	-1.0118	SMALL-LOSS	NONFOCAL	25	"BOLA1,FCGR1A,GPR89B,HIST2H2AA3,HIST2H2AA4,HIST2H2AB,HIST2H2AC,HIST2H2BE,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,NBPF11,NBPF14,NBPF15,NBPF8,NBPF9,PPIAL4A,PPIAL4C,PPIAL4D,PPIAL4E,PPIAL4F,SV2A"
TCGA.AA.3712	1	149040065	149852727	11	-0.5194	SMALL-LOSS	NONFOCAL	11	"FCGR1A,HIST2H2AA3,HIST2H2AA4,HIST2H2BF,HIST2H3A,HIST2H3C,HIST2H3D,HIST2H4A,HIST2H4B,PPIAL4A,PPIAL4C"
TCGA.CK.5914.01A	1	150931606	151170452	106	-0.5294	SMALL-LOSS	NONFOCAL	17	"ANXA9,BNIPL,C1orf56,CDC42SE1,CERS2,FAM63A,GABPB2,LYSMD1,MLLT11,PRUNE,SCNM1,SEMA6C,SETDB1,TMOD4,TNFAIP8L2,TNFAIP8L2-SCNM1,VPS72"
TCGA.AA.3549	1	151950289	152598710	200	-0.7273	SMALL-LOSS	NONFOCAL	16	"CRCT1,CRNN,FLG,FLG2,HRNR,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE5A,RPTN,S100A10,S100A11,TCHH,TCHHL1"
TCGA.AA.A00D.01A	1	152484019	153598745	83	-0.5647	SMALL-LOSS	NONFOCAL	52	"C1orf68,CRCT1,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3D,LCE3E,LCE4A,LCE5A,LCE6A,LELP1,LOR,PGLYRP3,PGLYRP4,PRR9,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SMCP,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,SPRR4"
TCGA.AG.A016.01A	1	152659278	153004780	22	-0.5859	SMALL-LOSS	NONFOCAL	18	"C1orf68,IVL,KPRP,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2B,LCE4A,LCE6A,SMCP,SPRR1A,SPRR1B,SPRR3,SPRR4"
TCGA.AA.A01C.01A	1	153190629	155171167	473	-0.5465	SMALL-LOSS	NONFOCAL	68	"ADAM15,ADAR,AQP10,ATP8B2,C1orf189,C1orf43,CHRNB2,CHTOP,CKS1B,CREB3L4,CRTC2,DCST1,DCST2,DENND4B,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,GATAD2B,HAX1,IL6R,ILF2,INTS3,JTB,KCNN3,KRTCAP2,LENEP,LOR,MUC1,NPR1,NUP210L,PBXIP1,PGLYRP3,PGLYRP4,PMVK,PRR9,PYGO2,RAB13,RPS27,S100A1,S100A12,S100A13,S100A14,S100A16,S100A2,S100A3,S100A4,S100A5,S100A6,S100A7,S100A7A,S100A7L2,S100A8,S100A9,SHC1,SHE,SLC27A3,SLC39A1,SLC50A1,SNAPIN,TDRD10,THBS3,TPM3,TRIM46,UBAP2L,UBE2Q1,ZBTB7B"
TCGA.CK.5914.01A	1	154245792	155292104	303	-0.5401	SMALL-LOSS	NONFOCAL	40	"ADAM15,ADAR,AQP10,ATP8B2,CHRNB2,CKS1B,CLK2,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,FLAD1,GBA,HAX1,HCN3,IL6R,KCNN3,KRTCAP2,LENEP,MTX1,MUC1,PBXIP1,PKLR,PMVK,PYGO2,RUSC1,RUSC1-AS1,SCAMP3,SHC1,SHE,SLC50A1,TDRD10,THBS3,TRIM46,UBE2Q1,ZBTB7B"
TCGA.AG.3909.01A	1	154918031	155154299	93	-0.7792	SMALL-LOSS	NONFOCAL	17	"ADAM15,CKS1B,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FLAD1,KRTCAP2,LENEP,PBXIP1,PYGO2,SHC1,SLC50A1,TRIM46,ZBTB7B"
TCGA.AA.A00N.01A	1	154924219	155313067	203	-0.6858	SMALL-LOSS	NONFOCAL	30	"ADAM15,ASH1L,CKS1B,CLK2,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA4,FAM189B,FDPS,FLAD1,GBA,HCN3,KRTCAP2,LENEP,MTX1,MUC1,PBXIP1,PKLR,PYGO2,RUSC1,RUSC1-AS1,SCAMP3,SHC1,SLC50A1,THBS3,TRIM46,ZBTB7B"
TCGA.AG.3909.01A	1	155870171	156386509	162	-0.5593	SMALL-LOSS	NONFOCAL	24	"ARHGEF2,BGLAP,C1orf61,CCT3,GLMP,KIAA0907,LAMTOR2,LMNA,MEX3A,PAQR6,PMF1,PMF1-BGLAP,RAB25,RHBG,RIT1,RXFP4,SEMA4A,SLC25A44,SMG5,SSR2,TMEM79,TSACC,UBQLN4,VHLL"
TCGA.AG.3909.01A	1	156561547	156911113	133	-0.7642	SMALL-LOSS	NONFOCAL	17	"APOA1BP,ARHGEF11,BCAN,CRABP2,GPATCH4,HAPLN2,HDGF,INSRR,ISG20L2,LRRC71,MRPL24,NES,NTRK1,PEAR1,PRCC,RRNAD1,SH2D2A"
TCGA.AA.A00D.01A	1	159024550	159803004	44	-0.8365	SMALL-LOSS	NONFOCAL	13	"ACKR1,AIM2,APCS,CADM3,CRP,DUSP23,FCER1A,FCRL6,IFI16,OR10J1,OR10J3,OR10J5,SLAMF8"
TCGA.AA.A00Q.01A	1	159751912	160063448	67	-0.7509	SMALL-LOSS	NONFOCAL	13	"C1orf204,CFAP45,DUSP23,FCRL6,IGSF8,IGSF9,KCNJ10,KCNJ9,PIGM,SLAMF8,SLAMF9,TAGLN2,VSIG8"
TCGA.AG.A025.01A	1	161088523	161293336	83	-0.726	SMALL-LOSS	NONFOCAL	15	"ADAMTS4,APOA2,B4GALT3,DEDD,FCER1G,MPZ,NDUFS2,NIT1,NR1I3,PCP4L1,PPOX,SDHC,TOMM40L,UFC1,USP21"
TCGA.AA.A00L.01A	1	163039054	176525512	747	-0.5187	SMALL-LOSS	NONFOCAL	84	"ADCY10,ALDH9A1,ANKRD45,ATP1B1,BLZF1,C1orf105,C1orf112,CACYBP,CCDC181,CD247,CENPL,CREG1,DARS2,DCAF6,DNM3,DPT,DUSP27,F5,FAM78B,FASLG,FMO1,FMO2,FMO3,FMO4,GORAB,GPA33,GPR161,GPR52,ILDR2,KIAA0040,KIFAP3,KLHL20,LMX1A,LOC730159,LRRC52,MAEL,METTL11B,METTL13,METTL18,MGST3,MPC2,MPZL1,MROH9,MRPS14,MYOC,NME7,NUF2,PAPPA2,PBX1,PIGC,POGK,POU2F1,PRDX6,PRRC2C,PRRX1,RABGAP1L,RC3H1,RCSD1,RFWD2,RGS4,RGS5,RXRG,SCYL3,SELE,SELL,SELP,SERPINC1,SFT2D2,SLC19A2,SLC9C2,SUCO,TADA1,TBX19,TIPRL,TMCO1,TNFSF18,TNFSF4,TNN,TNR,UCK2,VAMP4,XCL1,XCL2,ZBTB37"
TCGA.AA.A00D.01A	1	166135195	174926955	591	-0.5228	SMALL-LOSS	NONFOCAL	66	"ADCY10,ANKRD45,ATP1B1,BLZF1,C1orf105,C1orf112,CCDC181,CD247,CENPL,CREG1,DARS2,DCAF6,DNM3,DPT,DUSP27,F5,FAM78B,FASLG,FMO1,FMO2,FMO3,FMO4,GORAB,GPA33,GPR161,GPR52,ILDR2,KIFAP3,KLHL20,LOC730159,MAEL,METTL11B,METTL13,METTL18,MPC2,MPZL1,MROH9,MYOC,NME7,PIGC,POGK,POU2F1,PRDX6,PRRC2C,PRRX1,RABGAP1L,RC3H1,RCSD1,SCYL3,SELE,SELL,SELP,SERPINC1,SFT2D2,SLC19A2,SLC9C2,SUCO,TADA1,TBX19,TIPRL,TNFSF18,TNFSF4,VAMP4,XCL1,XCL2,ZBTB37"
TCGA.AA.3980.01A	1	167904929	169525862	120	-0.9709	SMALL-LOSS	NONFOCAL	15	"ATP1B1,BLZF1,CCDC181,DCAF6,DPT,F5,GPR161,MPC2,NME7,SFT2D2,SLC19A2,TBX19,TIPRL,XCL1,XCL2"
TCGA.F4.6808	1	179084079	180794652	526	-0.5788	SMALL-LOSS	NONFOCAL	13	"ABL2,ACBD6,AXDND1,CEP350,FAM163A,LHX4,NPHS2,QSOX1,SOAT1,TDRD5,TOR1AIP1,TOR1AIP2,XPR1"
TCGA.AG.3726	1	183810983	186980817	935	-0.5784	SMALL-LOSS	NONFOCAL	18	"C1orf21,C1orf27,COLGALT2,EDEM3,FAM129A,HMCN1,IVNS1ABP,OCLM,PDC,PLA2G4A,PRG4,PTGS2,RGL1,RNF2,SWT1,TPR,TRMT1L,TSEN15"
TCGA.AA.A00D.01A	1	185143465	192628426	190	-0.6505	SMALL-LOSS	NONFOCAL	15	"BRINP3,C1orf27,HMCN1,IVNS1ABP,OCLM,PDC,PLA2G4A,PRG4,PTGS2,RGS1,RGS13,RGS18,RGS21,SWT1,TPR"
TCGA.AA.3850	1	185430493	199807062	4027	-0.69215	SMALL-LOSS	NONFOCAL	36	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,HMCN1,KCNT2,LHX9,NEK7,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TPR,TROVE2,UCHL5,ZBTB41"
TCGA.AA.3844	1	185430493	199825784	4029	-0.5319	SMALL-LOSS	NONFOCAL	36	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf27,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,HMCN1,KCNT2,LHX9,NEK7,OCLM,PDC,PLA2G4A,PRG4,PTGS2,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TPR,TROVE2,UCHL5,ZBTB41"
TCGA.AA.3941	1	189181424	199789267	2896	-0.5917	SMALL-LOSS	NONFOCAL	28	"ASPM,ATP6V1G3,B3GALT2,BRINP3,C1orf53,CDC73,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DENND1B,F13B,GLRX2,KCNT2,LHX9,NEK7,PTPRC,RGS1,RGS13,RGS18,RGS2,RGS21,TROVE2,UCHL5,ZBTB41"
TCGA.AG.3726	1	195267322	201339379	1802	-0.5985	SMALL-LOSS	NONFOCAL	31	"ASCL5,ASPM,ATP6V1G3,C1orf106,C1orf53,CACNA1S,CAMSAP2,CFH,CFHR1,CFHR2,CFHR3,CFHR4,CFHR5,CRB1,DDX59,DENND1B,F13B,GPR25,IGFN1,KCNT2,KIF14,KIF21B,LHX9,NEK7,NR5A2,PKP1,PTPRC,TMEM9,TNNT2,ZBTB41,ZNF281"
TCGA.AA.A00D.01A	1	196918564	200550279	158	-0.6355	SMALL-LOSS	NONFOCAL	15	"ASPM,ATP6V1G3,C1orf53,CFHR2,CFHR5,CRB1,DENND1B,F13B,KIF14,LHX9,NEK7,NR5A2,PTPRC,ZBTB41,ZNF281"
TCGA.AG.3727	1	197548932	202367830	1617	-0.7486	SMALL-LOSS	NONFOCAL	37	"ARL8A,ASCL5,ATP6V1G3,C1orf106,C1orf53,CACNA1S,CAMSAP2,CSRP1,DDX59,DENND1B,ELF3,GPR25,GPR37L1,IGFN1,IPO9,KIF14,KIF21B,LAD1,LGR6,LHX9,LMOD1,NAV1,NEK7,NR5A2,PHLDA3,PKP1,PPP1R12B,PTPN7,PTPRC,RNPEP,SHISA4,TIMM17A,TMEM9,TNNI1,TNNT2,UBE2T,ZNF281"
TCGA.A6.2671	1	198414705	212999700	5206	-0.6656	SMALL-LOSS	NONFOCAL	145	Too-Many
TCGA.DY.A1H8	1	199038042	202853592	1333	-0.8526	SMALL-LOSS	NONFOCAL	34	"ARL8A,ASCL5,C1orf106,CACNA1S,CAMSAP2,CSRP1,DDX59,ELF3,GPR25,GPR37L1,IGFN1,IPO9,KDM5B,KIF14,KIF21B,LAD1,LGR6,LMOD1,NAV1,NR5A2,PHLDA3,PKP1,PPP1R12B,PTPN7,RABIF,RNPEP,SHISA4,SYT2,TIMM17A,TMEM9,TNNI1,TNNT2,UBE2T,ZNF281"
TCGA.DY.A1DG	1	199582811	223309532	8606	-0.5287	SMALL-LOSS	NONFOCAL	180	Too-Many
TCGA.D5.6533	1	201137526	202676424	549	-0.5555	SMALL-LOSS	NONFOCAL	22	"ARL8A,CSRP1,ELF3,GPR37L1,IGFN1,IPO9,LAD1,LGR6,LMOD1,NAV1,PHLDA3,PKP1,PPP1R12B,PTPN7,RNPEP,SHISA4,SYT2,TIMM17A,TMEM9,TNNI1,TNNT2,UBE2T"
TCGA.AG.3575	1	208853790	216004108	2668	-0.7029	SMALL-LOSS	NONFOCAL	41	"ANGEL2,ATF3,BATF3,C1orf74,CAMK1G,CENPF,DIEXF,DTL,FAM71A,FLVCR1,G0S2,HHAT,HSD11B1,INTS7,IRF6,KCNH1,KCNK2,KCTD3,LAMB3,LPGAT1,MIR205HG,NEK2,NENF,NSL1,PPP2R5A,PROX1,PTPN14,RCOR3,RD3,RPS6KC1,SERTAD4,SLC30A1,SMYD2,SPATA45,SYT14,TATDN3,TMEM206,TRAF3IP3,TRAF5,USH2A,VASH2"
TCGA.AA.3549	1	209317219	211668399	944	-0.6956	SMALL-LOSS	NONFOCAL	16	"C1orf74,CAMK1G,DIEXF,G0S2,HHAT,HSD11B1,IRF6,KCNH1,LAMB3,MIR205HG,RCOR3,RD3,SERTAD4,SYT14,TRAF3IP3,TRAF5"
TCGA.A6.2671	1	213020778	217338811	1701	-0.6666	SMALL-LOSS	NONFOCAL	13	"ANGEL2,CENPF,ESRRG,FLVCR1,KCNK2,KCTD3,PROX1,PTPN14,RPS6KC1,SMYD2,SPATA45,USH2A,VASH2"
TCGA.AA.3549	1	221907815	249198691	9778	-0.6849	SMALL-LOSS	NONFOCAL	200	Too-Many
TCGA.A6.3808.01A	1	227920045	228676611	158	-1.1596	SMALL-LOSS	NONFOCAL	18	"ARF1,C1orf35,GJC2,GUK1,HIST3H2A,HIST3H2BB,HIST3H3,IBA57,JMJD4,MRPL55,OBSCN,PRSS38,RNF187,SNAP47,TRIM11,TRIM17,WNT3A,WNT9A"
TCGA.AA.3968	1	228079191	249198691	7944	-1.1527	SMALL-LOSS	NONFOCAL	156	Too-Many
TCGA.D5.5538	1	228544235	229584416	371	-0.5602	SMALL-LOSS	NONFOCAL	14	"ACTA1,BTNL10,CCSAP,HIST3H2A,HIST3H2BB,HIST3H3,NUP133,OBSCN,RAB4A,RHOU,RNF187,SPHAR,TRIM11,TRIM17"
TCGA.A6.2671	1	228654194	231955725	1248	-0.6907	SMALL-LOSS	NONFOCAL	29	"ABCB10,ACTA1,AGT,ARV1,BTNL10,C1orf131,C1orf198,CAPN9,CCSAP,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GNPAT,LOC149373,NUP133,PGBD5,RAB4A,RHOU,RNF187,SPHAR,SPRTN,TAF5L,TRIM67,TSNAX,TTC13,URB2"
TCGA.AA.3952	1	230097367	231834900	694	-0.6269	SMALL-LOSS	NONFOCAL	18	"AGT,ARV1,C1orf131,C1orf198,CAPN9,COG2,DISC1,EGLN1,EXOC8,FAM89A,GALNT2,GNPAT,LOC149373,PGBD5,SPRTN,TRIM67,TSNAX,TTC13"
TCGA.F4.6808	1	230632947	231740696	426	-0.6444	SMALL-LOSS	NONFOCAL	15	"AGT,ARV1,C1orf131,C1orf198,CAPN9,COG2,EGLN1,EXOC8,FAM89A,GNPAT,LOC149373,SPRTN,TRIM67,TSNAX,TTC13"
TCGA.D5.6533	1	230951897	239686176	3658	-0.6562	SMALL-LOSS	NONFOCAL	42	"ACTN2,ARID4B,ARV1,B3GALNT2,C1orf131,C1orf198,COA6,DISC1,EDARADD,EGLN1,ERO1LB,EXOC8,FAM89A,GGPS1,GNG4,GNPAT,GPR137B,HEATR1,IRF2BP2,KCNK1,KIAA1804,LGALS8,LOC149373,LYST,MAP10,MT1HL1,MTR,NID1,NTPCR,PCNXL2,RBM34,RYR2,SIPA1L2,SLC35F3,SPRTN,TARBP1,TBCE,TOMM20,TRIM67,TSNAX,TTC13,ZP4"
TCGA.AG.A01W.01A	1	231454685	234499759	219	-0.8511	SMALL-LOSS	NONFOCAL	12	"DISC1,EGLN1,EXOC8,KCNK1,KIAA1804,MAP10,NTPCR,PCNXL2,SIPA1L2,SLC35F3,SPRTN,TSNAX"
TCGA.DY.A1H8	1	231633150	249198691	6669	-0.8972	SMALL-LOSS	NONFOCAL	115	Too-Many
TCGA.A6.5656	1	235833300	237999969	948	-0.7551	SMALL-LOSS	NONFOCAL	11	"ACTN2,EDARADD,ERO1LB,GPR137B,HEATR1,LGALS8,LYST,MT1HL1,MTR,NID1,RYR2"
TCGA.A6.5656	1	242096550	249198691	2087	-0.7819	SMALL-LOSS	NONFOCAL	74	"ADSS,AHCTF1,AKT3,BECN2,C1orf100,C1orf101,C1orf229,CEP170,CNST,COX20,DESI2,EFCAB2,GCSAML,HNRNPU,KIF26B,LYPD8,MAP1LC3C,NLRP3,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2B11,OR2C3,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR2W5,OR6F1,PLD5,SCCPDH,SDCCAG8,SH3BP5L,SMYD3,TFB2M,TRIM58,VN1R5,ZBTB18,ZNF124,ZNF496,ZNF669,ZNF670,ZNF672,ZNF692,ZNF695"
TCGA.A6.3808.01A	1	247726839	248844703	56	-0.7617	SMALL-LOSS	NONFOCAL	39	"GCSAML,OR11L1,OR13G1,OR14A16,OR14C36,OR14I1,OR1C1,OR2AK2,OR2G2,OR2G3,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR6F1,TRIM58"
TCGA.G4.6323	1	247842152	248808556	217	-0.5584	SMALL-LOSS	NONFOCAL	33	"OR11L1,OR14A16,OR14C36,OR1C1,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,OR2T8,OR2W3,OR6F1,TRIM58"
TCGA.AA.A00A.01A	1	248112118	248569309	21	-0.7807	SMALL-LOSS	NONFOCAL	17	"OR14C36,OR2AK2,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T12,OR2T33,OR2T4,OR2T6"
TCGA.AA.A00D.01A	1	248112118	248737464	30	-1.0238	SMALL-LOSS	NONFOCAL	23	"OR14C36,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T12,OR2T2,OR2T29,OR2T3,OR2T33,OR2T34,OR2T4,OR2T5,OR2T6"
TCGA.AA.A00L.01A	1	248112118	249210793	53	-0.7255	SMALL-LOSS	NONFOCAL	33	"LYPD8,OR14C36,OR14I1,OR2AK2,OR2G6,OR2L13,OR2L2,OR2L3,OR2L5,OR2L8,OR2M2,OR2M3,OR2M4,OR2M5,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,PGBD2,SH3BP5L,ZNF672,ZNF692"
TCGA.A6.5661	1	248411056	249198691	102	-0.6256	SMALL-LOSS	NONFOCAL	22	"LYPD8,OR14C36,OR14I1,OR2G6,OR2M7,OR2T1,OR2T10,OR2T11,OR2T12,OR2T2,OR2T27,OR2T29,OR2T3,OR2T33,OR2T34,OR2T35,OR2T4,OR2T5,OR2T6,SH3BP5L,ZNF672,ZNF692"
TCGA.A6.5661	2	21832	4130778	1529	-0.6895	SMALL-LOSS	NONFOCAL	17	"ACP1,ADI1,ALLC,COLEC11,DCDC2C,FAM110C,FAM150B,MYT1L,PXDN,RNASEH1,RPS7,SH3YL1,SNTG2,TMEM18,TPO,TRAPPC12,TSSC1"
TCGA.AG.3896	2	21832	11056827	4522	-0.6099	SMALL-LOSS	NONFOCAL	42	"ACP1,ADAM17,ADI1,ALLC,ASAP2,ATP6V1C2,C2orf48,CMPK2,COLEC11,CPSF3,CYS1,DCDC2C,FAM110C,FAM150B,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KCNF1,KIDINS220,KLF11,MBOAT2,MYT1L,NOL10,ODC1,PDIA6,PXDN,RNASEH1,RNF144A,RPS7,RRM2,RSAD2,SH3YL1,SNTG2,SOX11,TAF1B,TMEM18,TPO,TRAPPC12,TSSC1,YWHAQ"
TCGA.AG.3732	2	21832	38441982	14122	-0.5876	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.EI.6883	2	8571138	10553927	699	-0.679	SMALL-LOSS	NONFOCAL	16	"ADAM17,ASAP2,C2orf48,CPSF3,CYS1,GRHL1,HPCAL1,IAH1,ID2,ITGB1BP1,KIDINS220,KLF11,MBOAT2,RRM2,TAF1B,YWHAQ"
TCGA.AA.3952	2	9449555	10845746	507	-0.562	SMALL-LOSS	NONFOCAL	15	"ADAM17,ASAP2,C2orf48,CPSF3,CYS1,GRHL1,HPCAL1,IAH1,ITGB1BP1,KLF11,NOL10,ODC1,RRM2,TAF1B,YWHAQ"
TCGA.DM.A28H	2	10195539	14116114	1522	-0.6545	SMALL-LOSS	NONFOCAL	17	"ATP6V1C2,C2orf48,C2orf50,CYS1,E2F6,GREB1,HPCAL1,KCNF1,LPIN1,NOL10,NTSR2,ODC1,PDIA6,PQLC3,ROCK2,RRM2,TRIB2"
TCGA.AA.3544	2	14409210	21439497	2785	-0.6415	SMALL-LOSS	NONFOCAL	28	"APOB,DDX1,FAM49A,FAM84A,GDF7,GEN1,HS1BP3,KCNS3,LAPTM4A,LDAH,LOC653602,MATN3,MSGN1,MYCN,NBAS,NT5C1B,NT5C1B-RDH14,OSR1,PUM2,RAD51AP2,RDH14,RHOB,SDC1,SMC6,TDRD15,TTC32,VSNL1,WDR35"
TCGA.AA.A00N.01A	2	27245050	27435024	88	-0.9436	SMALL-LOSS	NONFOCAL	13	"ABHD1,AGBL5,ATRAID,CGREF1,EMILIN1,KHK,MAPRE3,OST4,PREB,PRR30,SLC5A6,TCF23,TMEM214"
TCGA.AG.A02X.01A	2	27245050	27670334	209	-0.8123	SMALL-LOSS	NONFOCAL	27	"ABHD1,AGBL5,ATRAID,CAD,CGREF1,DNAJC5G,EIF2B4,EMILIN1,GTF3C2,IFT172,KHK,KRTCAP3,MAPRE3,MPV17,NRBP1,OST4,PPM1G,PREB,PRR30,SLC30A3,SLC5A6,SNX17,TCF23,TMEM214,TRIM54,UCN,ZNF513"
TCGA.A6.3808.01A	2	27275846	27663219	198	-0.688	SMALL-LOSS	NONFOCAL	23	"ABHD1,AGBL5,ATRAID,CAD,CGREF1,DNAJC5G,EIF2B4,EMILIN1,GTF3C2,KHK,MPV17,NRBP1,OST4,PPM1G,PREB,PRR30,SLC30A3,SLC5A6,SNX17,TCF23,TRIM54,UCN,ZNF513"
TCGA.AA.A029.01A	2	27435997	27663219	115	-0.8559	SMALL-LOSS	NONFOCAL	13	"ATRAID,CAD,DNAJC5G,EIF2B4,GTF3C2,MPV17,NRBP1,PPM1G,SLC30A3,SNX17,TRIM54,UCN,ZNF513"
TCGA.AG.A023.01A	2	27500591	27677185	85	-0.6665	SMALL-LOSS	NONFOCAL	12	"DNAJC5G,EIF2B4,GTF3C2,IFT172,KRTCAP3,MPV17,NRBP1,PPM1G,SNX17,TRIM54,UCN,ZNF513"
TCGA.DY.A1H8	2	27839538	37192865	3444	-0.9011	SMALL-LOSS	NONFOCAL	42	"ALK,BIRC6,BRE,C2orf71,CAPN13,CAPN14,CCDC121,CLIP4,CRIM1,DPY30,EHD3,FAM179A,FAM98A,FEZ2,FOSL2,GALNT14,GPN1,LBH,LCLAT1,LTBP1,MEMO1,MRPL33,NLRC4,PLB1,PPP1CB,RASGRP3,RBKS,SLC30A6,SLC4A1AP,SPAST,SPDYA,SRD5A2,STRN,SUPT7L,TRMT61B,TTC27,VIT,WDR43,XDH,YIPF4,YPEL5,ZNF512"
TCGA.AA.A00D.01A	2	29354076	38960569	513	-0.5377	SMALL-LOSS	NONFOCAL	40	"ALK,ATL2,BIRC6,CAPN13,CAPN14,CDC42EP3,CEBPZ,CLIP4,CRIM1,CYP1B1,DPY30,EHD3,EIF2AK2,FAM98A,FEZ2,GALM,GALNT14,GPATCH11,HEATR5B,HNRNPLL,LBH,LCLAT1,LTBP1,MEMO1,NDUFAF7,NLRC4,PRKD3,QPCT,RASGRP3,RMDN2,SLC30A6,SPAST,SRD5A2,STRN,SULT6B1,TTC27,VIT,XDH,YIPF4,YPEL5"
TCGA.F5.6864	2	30065137	55799990	9869	-0.5457	SMALL-LOSS	NONFOCAL	116	Too-Many
TCGA.AG.3727	2	33828973	54305029	8134	-0.8141	SMALL-LOSS	NONFOCAL	83	"ABCG5,ABCG8,ARHGEF33,ASB3,ATL2,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,CDC42EP3,CDKL4,CEBPZ,CHAC2,COX7A2L,CRIM1,CRIPT,CYP1B1,DHX57,DYNC2LI1,EIF2AK2,EML4,EPAS1,EPCAM,ERLEC1,FBXO11,FEZ2,FOXN2,FSHR,GALM,GEMIN6,GPATCH11,GPR75,GPR75-ASB3,GTF2A1L,HAAO,HEATR5B,HNRNPLL,KCNG3,KCNK12,LHCGR,LRPPRC,MAP4K3,MCFD2,MORN2,MSH2,MSH6,MTA3,NDUFAF7,NRXN1,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PPP1R21,PREPL,PRKCE,PRKD3,PSME4,QPCT,RHOQ,RMDN2,SIX2,SIX3,SLC3A1,SLC8A1,SOCS5,SOS1,SRBD1,SRSF7,STON1,STON1-GTF2A1L,STRN,SULT6B1,THADA,THUMPD2,TMEM178A,TMEM247,TTC7A,VIT,ZFP36L2"
TCGA.AA.A01S	2	34410925	44058066	3903	-0.95305	SMALL-LOSS	NONFOCAL	43	"ABCG5,ARHGEF33,ATL2,C1GALT1C1L,C2orf91,CDC42EP3,CDKL4,CEBPZ,COX7A2L,CRIM1,CYP1B1,DHX57,DYNC2LI1,EIF2AK2,EML4,FEZ2,GALM,GEMIN6,GPATCH11,HAAO,HEATR5B,HNRNPLL,KCNG3,MAP4K3,MORN2,MTA3,NDUFAF7,OXER1,PKDCC,PLEKHH2,PRKD3,QPCT,RMDN2,SLC8A1,SOS1,SRSF7,STRN,SULT6B1,THADA,THUMPD2,TMEM178A,VIT,ZFP36L2"
TCGA.AA.A00D.01A	2	39008620	43453331	151	-0.5503	SMALL-LOSS	NONFOCAL	19	"ARHGEF33,C2orf91,CDKL4,COX7A2L,DHX57,EML4,GEMIN6,HAAO,KCNG3,MAP4K3,MORN2,MTA3,OXER1,PKDCC,SLC8A1,SOS1,THUMPD2,TMEM178A,ZFP36L2"
TCGA.NH.A50V	2	39087889	57808670	7123	-0.5762	SMALL-LOSS	NONFOCAL	78	"ABCG5,ABCG8,ACYP2,ARHGEF33,ASB3,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf73,C2orf91,CALM2,CAMKMT,CCDC85A,CCDC88A,CDKL4,CFAP36,CHAC2,CLHC1,COX7A2L,CRIPT,DHX57,DYNC2LI1,EFEMP1,EML4,EML6,EPAS1,EPCAM,ERLEC1,FBXO11,FOXN2,FSHR,GPR75,GPR75-ASB3,GTF2A1L,HAAO,KCNG3,KCNK12,LHCGR,LRPPRC,MAP4K3,MCFD2,MORN2,MSH2,MSH6,MTA3,MTIF2,NRXN1,OXER1,PIGF,PKDCC,PLEKHH2,PNPT1,PPM1B,PPP1R21,PREPL,PRKCE,PSME4,RHOQ,RPS27A,RTN4,SIX2,SIX3,SLC3A1,SLC8A1,SMEK2,SOCS5,SOS1,SPTBN1,SRBD1,STON1,STON1-GTF2A1L,THADA,THUMPD2,TMEM178A,TMEM247,TSPYL6,TTC7A,ZFP36L2"
TCGA.A6.2678	2	40757027	46921284	2592	-0.689	SMALL-LOSS	NONFOCAL	30	"ABCG5,ABCG8,ATP6V1E2,C1GALT1C1L,C2orf91,CAMKMT,COX7A2L,CRIPT,DYNC2LI1,EML4,EPAS1,HAAO,KCNG3,LRPPRC,MTA3,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SRBD1,THADA,TMEM247,ZFP36L2"
TCGA.CM.4746	2	41401058	51323894	3884	-0.8233	SMALL-LOSS	NONFOCAL	48	"ABCG5,ABCG8,ATP6V1E2,C1GALT1C1L,C2orf61,C2orf91,CALM2,CAMKMT,COX7A2L,CRIPT,DYNC2LI1,EML4,EPAS1,EPCAM,FBXO11,FOXN2,FSHR,GTF2A1L,HAAO,KCNG3,KCNK12,LHCGR,LRPPRC,MCFD2,MSH2,MSH6,MTA3,NRXN1,OXER1,PIGF,PKDCC,PLEKHH2,PPM1B,PPP1R21,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SOCS5,SRBD1,STON1,STON1-GTF2A1L,THADA,TMEM247,TTC7A,ZFP36L2"
TCGA.AA.3952	2	43466618	47547985	1754	-0.5847	SMALL-LOSS	NONFOCAL	26	"ABCG5,ABCG8,ATP6V1E2,C1GALT1C1L,C2orf61,CALM2,CAMKMT,CRIPT,DYNC2LI1,EPAS1,LRPPRC,MCFD2,PIGF,PLEKHH2,PPM1B,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SOCS5,SRBD1,THADA,TMEM247,TTC7A"
TCGA.AA.A00D.01A	2	43921510	46819586	178	-0.55	SMALL-LOSS	NONFOCAL	18	"ABCG5,ABCG8,ATP6V1E2,CAMKMT,DYNC2LI1,EPAS1,LRPPRC,PIGF,PLEKHH2,PPM1B,PREPL,PRKCE,RHOQ,SIX2,SIX3,SLC3A1,SRBD1,TMEM247"
TCGA.AA.A01S	2	62220443	89007286	7714	-0.97405	SMALL-LOSS	NONFOCAL	169	Too-Many
TCGA.AA.3544	2	73219921	77092463	1165	-0.5746	SMALL-LOSS	NONFOCAL	49	"ACTG2,ALMS1,AUP1,BOLA3,C2orf78,C2orf81,CCDC142,CCT7,DCTN1,DGUOK,DOK1,DQX1,DUSP11,EGR4,EVA1A,FBXO41,GCFC2,HK2,HTRA2,INO80B,LBX2,LOXL3,LRRTM4,M1AP,MOB1A,MOGS,MRPL19,MRPL53,MTHFD2,NAT8,NAT8B,NOTO,PCGF1,POLE4,PRADC1,RAB11FIP5,RTKN,SEMA4F,SFXN5,SLC4A5,SMYD5,STAMBP,TACR1,TET3,TLX2,TPRKB,TTC31,WBP1,WDR54"
TCGA.AA.A00N.01A	2	74593903	74762382	93	-1.1206	SMALL-LOSS	NONFOCAL	17	"AUP1,C2orf81,CCDC142,DCTN1,DQX1,HTRA2,INO80B,LBX2,LOXL3,MOGS,MRPL53,PCGF1,RTKN,TLX2,TTC31,WBP1,WDR54"
TCGA.AG.3909.01A	2	74655729	74757105	49	-1.0348	SMALL-LOSS	NONFOCAL	13	"AUP1,CCDC142,DQX1,HTRA2,INO80B,LBX2,MOGS,MRPL53,PCGF1,RTKN,TLX2,TTC31,WBP1"
TCGA.AG.A02X.01A	2	74666617	74755382	41	-0.8513	SMALL-LOSS	NONFOCAL	12	"AUP1,CCDC142,DQX1,INO80B,LBX2,MOGS,MRPL53,PCGF1,RTKN,TLX2,TTC31,WBP1"
TCGA.AA.3544	2	95574997	97288585	97	-0.6591	SMALL-LOSS	NONFOCAL	22	"ADRA2B,ARID5A,ASTL,CIAO1,DUSP2,FAHD2A,GPAT2,ITPRIPL1,KANSL3,KCNIP3,MAL,MRPS5,NCAPH,NEURL3,PROM2,SNRNP200,STARD7,TMEM127,TRIM43,TRIM43B,ZNF2,ZNF514"
TCGA.AA.3660	2	96496890	113469234	4210	-0.5872	SMALL-LOSS	NONFOCAL	112	Too-Many
TCGA.AA.A00D.01A	2	99634962	101098656	113	-0.6256	SMALL-LOSS	NONFOCAL	14	"AFF3,C2orf15,CHST10,EIF5B,LIPT1,LONRF2,LYG1,LYG2,MITD1,MRPL30,NMS,REV1,TSGA10,TXNDC9"
TCGA.F4.6461	2	107177167	112423211	1184	-0.5223	SMALL-LOSS	NONFOCAL	23	"ACOXL,BCL2L11,BUB1,CCDC138,EDAR,GCC2,LIMS1,LIMS3,LIMS3L,MALL,NPHP1,RANBP2,RGPD4,RGPD5,RGPD6,SEPT10,SH3RF3,SLC5A7,SOWAHC,ST6GAL2,SULT1C2,SULT1C3,SULT1C4"
TCGA.A6.3808.01A	2	109388180	110907700	67	-0.5812	SMALL-LOSS	NONFOCAL	12	"CCDC138,EDAR,LIMS3,LIMS3L,MALL,NPHP1,RANBP2,RGPD5,RGPD6,SEPT10,SH3RF3,SOWAHC"
TCGA.AG.3898	2	112463124	113478888	194	-0.5561	SMALL-LOSS	NONFOCAL	12	"ANAPC1,CHCHD5,FBLN7,MERTK,POLR1B,RGPD5,RGPD8,SLC20A1,TMEM87B,TTL,ZC3H6,ZC3H8"
TCGA.DM.A1DB	2	114276299	145694453	9382	-0.7962	SMALL-LOSS	NONFOCAL	96	"ACMSD,ACTR3,AMER3,AMMECR1L,ARHGAP15,ARHGEF4,BIN1,C1QL2,C2orf27A,C2orf27B,C2orf76,CCDC115,CCDC74A,CCDC74B,CCDC93,CCNT2,CFAP221,CFC1,CFC1B,CLASP1,CNTNAP5,CXCR4,CYP27C1,DARS,DBI,DDX18,DPP10,EN1,EPB41L5,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GTDC1,GYPC,HNMT,HS6ST1,IMP4,INHBB,INSIG2,IWS1,KYNU,LCT,LIMS2,LRP1B,LYPD1,MAP3K19,MAP3K2,MARCO,MCM6,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,NXPH2,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,PTPN4,R3HDM1,RAB3GAP1,RAB6C,RABL2A,RALB,SAP130,SCTR,SFT2D3,SLC35F5,SMPD4,SPOPL,STEAP3,TFCP2L1,THSD7B,TMEM163,TMEM177,TMEM185B,TMEM37,TSN,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZEB2,ZNF806,ZRANB3"
TCGA.AA.3544	2	122205260	132142407	2815	-0.6484	SMALL-LOSS	NONFOCAL	41	"AMER3,AMMECR1L,ARHGEF4,BIN1,CCDC115,CCDC74B,CFC1,CFC1B,CLASP1,CNTNAP5,CYP27C1,ERCC3,FAM168B,GPR148,GPR17,GYPC,HS6ST1,IMP4,IWS1,LIMS2,MAP3K2,MYO7B,MZT2B,NIFK,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,RAB6C,SAP130,SFT2D3,SMPD4,TSN,TUBA3E,UGGT1,WDR33,WTH3DI"
TCGA.AZ.4308	2	124663186	148150028	6701	-0.661	SMALL-LOSS	NONFOCAL	69	"ACMSD,AMER3,AMMECR1L,ARHGAP15,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CNTNAP5,CXCR4,CYP27C1,DARS,ERCC3,FAM168B,GPR148,GPR17,GPR39,GTDC1,GYPC,HNMT,HS6ST1,IMP4,IWS1,KYNU,LCT,LIMS2,LRP1B,LYPD1,MAP3K19,MAP3K2,MCM6,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,NXPH2,PLEKHB2,POLR2D,POTEE,POTEF,POTEI,POTEJ,PROC,PTPN18,R3HDM1,RAB3GAP1,RAB6C,SAP130,SFT2D3,SMPD4,SPOPL,THSD7B,TMEM163,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,WTH3DI,ZEB2,ZNF806,ZRANB3"
TCGA.AF.2693	2	126129475	130970052	1461	-0.6099	SMALL-LOSS	NONFOCAL	23	"AMMECR1L,BIN1,CCDC74B,CYP27C1,ERCC3,GPR17,GYPC,HS6ST1,IWS1,LIMS2,MAP3K2,MYO7B,MZT2B,POLR2D,POTEF,PROC,RAB6C,SAP130,SFT2D3,SMPD4,TUBA3E,UGGT1,WDR33"
TCGA.AG.3909.01A	2	130858265	131356248	53	-0.6335	SMALL-LOSS	NONFOCAL	11	"CCDC115,CCDC74B,CFC1,CFC1B,IMP4,MZT2B,POTEF,POTEI,PTPN18,SMPD4,TUBA3E"
TCGA.AA.A00N.01A	2	130869561	133430774	140	-0.7136	SMALL-LOSS	NONFOCAL	28	"AMER3,ARHGEF4,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CFC1,CFC1B,FAM168B,GPR148,GPR39,IMP4,LYPD1,MZT2A,MZT2B,NCKAP5,PLEKHB2,POTEE,POTEF,POTEI,POTEJ,PTPN18,SMPD4,TUBA3D,TUBA3E,WTH3DI,ZNF806"
TCGA.DM.A1HA	2	131865063	137982147	1895	-0.9985	SMALL-LOSS	NONFOCAL	26	"ACMSD,C2orf27A,C2orf27B,CCDC74A,CCNT2,CXCR4,DARS,GPR39,LCT,LYPD1,MAP3K19,MCM6,MGAT5,MZT2A,NCKAP5,PLEKHB2,POTEE,R3HDM1,RAB3GAP1,THSD7B,TMEM163,TUBA3D,UBXN4,WTH3DI,ZNF806,ZRANB3"
TCGA.A6.2678	2	132937956	182396874	14452	-0.6726	SMALL-LOSS	NONFOCAL	176	Too-Many
TCGA.DM.A28H	2	133505872	168553124	9728	-0.6411	SMALL-LOSS	NONFOCAL	91	"ACMSD,ACVR1,ACVR1C,ACVR2A,ARHGAP15,ARL5A,ARL6IP6,BAZ2B,CACNB4,CCDC148,CCNT2,CD302,COBLL1,CSRNP3,CXCR4,CYTIP,DAPL1,DARS,DPP4,EPC2,ERMN,FAP,FIGN,FMNL2,GALNT13,GALNT3,GALNT5,GCA,GCG,GPD2,GRB14,GTDC1,HNMT,IFIH1,ITGB6,KCNH7,KCNJ3,KIF5C,KYNU,LCT,LOC100144595,LRP1B,LY75,LY75-CD302,LYPD6,LYPD6B,MAP3K19,MARCH7,MBD5,MCM6,MGAT5,MMADHC,NCKAP5,NEB,NMI,NR4A2,NXPH2,ORC4,PKP4,PLA2R1,PRPF40A,PSMD14,R3HDM1,RAB3GAP1,RBM43,RBMS1,RIF1,RND3,RPRM,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,SPOPL,STAM2,TANC1,TANK,TBR1,THSD7B,TMEM163,TNFAIP6,TTC21B,UBXN4,UPP2,WDSUB1,XIRP2,ZEB2,ZRANB3"
TCGA.AA.3941	2	137217608	148703964	3292	-0.6217	SMALL-LOSS	NONFOCAL	11	"ACVR2A,ARHGAP15,GTDC1,HNMT,KYNU,LRP1B,NXPH2,ORC4,SPOPL,THSD7B,ZEB2"
TCGA.DM.A1HA	2	137985284	151443639	3621	-0.9236	SMALL-LOSS	NONFOCAL	18	"ACVR2A,ARHGAP15,EPC2,GTDC1,HNMT,KIF5C,KYNU,LRP1B,LYPD6,LYPD6B,MBD5,MMADHC,NXPH2,ORC4,RND3,SPOPL,THSD7B,ZEB2"
TCGA.CA.5254	2	151183904	153675371	813	-1.2208	SMALL-LOSS	NONFOCAL	12	"ARL5A,ARL6IP6,CACNB4,FMNL2,NEB,NMI,PRPF40A,RBM43,RIF1,RND3,STAM2,TNFAIP6"
TCGA.AA.A00L.01A	2	152543895	159028588	109	-0.5303	SMALL-LOSS	NONFOCAL	20	"ACVR1,ACVR1C,ARL5A,ARL6IP6,CACNB4,CCDC148,CYTIP,ERMN,FMNL2,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NEB,NR4A2,PRPF40A,RPRM,STAM2,UPP2"
TCGA.AA.A00D.01A	2	153591460	159672170	119	-0.6609	SMALL-LOSS	NONFOCAL	16	"ACVR1,ACVR1C,ARL6IP6,CCDC148,CYTIP,DAPL1,ERMN,GALNT13,GALNT5,GPD2,KCNJ3,LOC100144595,NR4A2,PKP4,RPRM,UPP2"
TCGA.AA.3544	2	154318294	187348983	9250	-0.6115	SMALL-LOSS	NONFOCAL	142	Too-Many
TCGA.AA.3941	2	162263474	168553340	1498	-0.5377	SMALL-LOSS	NONFOCAL	22	"COBLL1,CSRNP3,DPP4,FAP,FIGN,GALNT3,GCA,GCG,GRB14,IFIH1,KCNH7,PSMD14,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,SLC4A10,TBR1,TTC21B,XIRP2"
TCGA.AA.A00L.01A	2	162849745	179368460	847	-0.5374	SMALL-LOSS	NONFOCAL	94	"ABCB11,AGPS,ATF2,ATP5G3,B3GALT1,BBS5,CCDC173,CDCA7,CERS6,CHN1,CHRNA1,CIR1,COBLL1,CSRNP3,CYBRD1,DCAF17,DFNB59,DHRS9,DLX1,DLX2,DPP4,DYNC1I2,ERICH2,EVX2,FAP,FASTKD1,FIGN,FKBP7,G6PC2,GAD1,GALNT3,GCA,GCG,GORASP2,GPR155,GRB14,HAT1,HNRNPA3,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,IFIH1,ITGA6,KCNH7,KIAA1715,KLHL23,KLHL41,LRP2,METAP1D,METTL5,METTL8,MTX2,MYO3B,NFE2L2,NOSTRIN,OLA1,OSBPL6,PDE11A,PDK1,PHOSPHO2,PHOSPHO2-KLHL23,PLEKHA3,PPIG,PRKRA,RAPGEF4,RBM45,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SCRN3,SLC25A12,SLC38A11,SP3,SP5,SP9,SPC25,SSB,STK39,TLK1,TTC21B,TTC30A,TTC30B,UBR3,WIPF1,XIRP2,ZAK"
TCGA.AA.A00D.01A	2	163027437	167060853	222	-0.7152	SMALL-LOSS	NONFOCAL	15	"COBLL1,CSRNP3,FAP,FIGN,GALNT3,GCA,GRB14,IFIH1,KCNH7,SCN1A,SCN2A,SCN3A,SCN9A,SLC38A11,TTC21B"
TCGA.AA.3850	2	163084479	168635914	1395	-0.68155	SMALL-LOSS	NONFOCAL	17	"COBLL1,CSRNP3,FAP,FIGN,GALNT3,GCA,GRB14,IFIH1,KCNH7,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SLC38A11,TTC21B,XIRP2"
TCGA.A6.3808.01A	2	170344244	170752970	74	-1.0573	SMALL-LOSS	NONFOCAL	11	"BBS5,CCDC173,FASTKD1,KLHL23,KLHL41,METTL5,PHOSPHO2,PHOSPHO2-KLHL23,PPIG,SSB,UBR3"
TCGA.D5.5538	2	172725300	176289318	1122	-0.5953	SMALL-LOSS	NONFOCAL	21	"ATF2,ATP5G3,CDCA7,CHN1,CHRNA1,CIR1,DLX1,DLX2,GPR155,HAT1,ITGA6,METAP1D,OLA1,PDK1,RAPGEF4,SCRN3,SLC25A12,SP3,SP9,WIPF1,ZAK"
TCGA.AA.A00N.01A	2	176856952	177135046	28	-1.1606	SMALL-LOSS	NONFOCAL	12	"EVX2,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2"
TCGA.CK.5914.01A	2	176856952	177135046	28	-0.7322	SMALL-LOSS	NONFOCAL	12	"EVX2,HOXD1,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,KIAA1715,MTX2"
TCGA.AY.A71X	2	178040694	181536655	1106	-0.7471	SMALL-LOSS	NONFOCAL	17	"AGPS,CCDC141,CWC22,DFNB59,FKBP7,HNRNPA3,NFE2L2,OSBPL6,PDE11A,PLEKHA3,PRKRA,RBM45,SESTD1,TTC30A,TTC30B,TTN,ZNF385B"
TCGA.AA.3850	2	179366092	185111869	1635	-0.53895	SMALL-LOSS	NONFOCAL	18	"CCDC141,CERKL,CWC22,DNAJC10,DUSP19,FRZB,ITGA4,NCKAP1,NEUROD1,NUP35,PDE1A,PLEKHA3,PPP1R1C,SESTD1,SSFA2,TTN,UBE2E3,ZNF385B"
TCGA.AA.A00L.01A	2	179749599	186678245	159	-0.6097	SMALL-LOSS	NONFOCAL	18	"CCDC141,CERKL,CWC22,DNAJC10,DUSP19,FRZB,FSIP2,ITGA4,NCKAP1,NEUROD1,NUP35,PDE1A,PPP1R1C,SESTD1,SSFA2,UBE2E3,ZNF385B,ZNF804A"
TCGA.AA.3941	2	185376559	190009717	926	-0.6384	SMALL-LOSS	NONFOCAL	12	"CALCRL,COL3A1,COL5A2,DIRC1,FAM171B,FSIP2,GULP1,ITGAV,TFPI,ZC3H15,ZNF804A,ZSWIM2"
TCGA.AA.3660	2	201692448	204033850	393	-0.6483	SMALL-LOSS	NONFOCAL	27	"ALS2,ALS2CR11,ALS2CR12,BMPR2,CARF,CASP10,CASP8,CDK15,CFLAR,CLK1,FAM117B,FAM126B,FZD7,ICA1L,KIAA2012,MPP4,NBEAL1,NDUFB3,NIF3L1,NOP58,ORC2,PPIL3,STRADB,SUMO1,TMEM237,TRAK2,WDR12"
TCGA.A6.3808.01A	2	202989875	204306704	168	-0.8281	SMALL-LOSS	NONFOCAL	12	"ABI2,BMPR2,CARF,CYP20A1,FAM117B,ICA1L,KIAA2012,NBEAL1,NOP58,RAPH1,SUMO1,WDR12"
TCGA.F4.6460	2	203714269	205578014	484	-0.5824	SMALL-LOSS	NONFOCAL	11	"ABI2,CARF,CD28,CTLA4,CYP20A1,ICA1L,ICOS,NBEAL1,PARD3B,RAPH1,WDR12"
TCGA.D5.5538	2	204491255	209505107	1637	-0.6207	SMALL-LOSS	NONFOCAL	30	"ADAM23,C2orf80,CCNYL1,CD28,CPO,CREB1,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,DYTN,EEF1B2,FASTKD2,FZD5,GPR1,ICOS,IDH1,INO80D,KLF7,LOC200726,MDH1B,METTL21A,NDUFS1,NRP2,PARD3B,PIKFYVE,PLEKHM3,PTH2R,ZDBF2"
TCGA.AA.A00D.01A	2	207395540	220074910	801	-0.5164	SMALL-LOSS	NONFOCAL	83	"AAMP,ABCA12,ABCB6,ACADL,ADAM23,ARPC2,ATIC,BARD1,BCS1L,C2orf80,CATIP,CCDC108,CCNYL1,CDK5R2,CNPPD1,CPO,CPS1,CREB1,CRYBA2,CRYGA,CRYGB,CRYGC,CRYGD,CTDSP1,CXCR1,CXCR2,CYP27A1,DYTN,ERBB4,FAM134A,FASTKD2,FEV,FN1,FZD5,GPBAR1,IDH1,IGFBP2,IGFBP5,IHH,IKZF2,KANSL1L,KLF7,LANCL1,LOC100130451,LOC200726,MAP2,MARCH4,MDH1B,METTL21A,MREG,MYL1,NHEJ1,PECR,PIKFYVE,PLCD4,PLEKHM3,PNKD,PRKAG3,PTH2R,RNF25,RPE,RPL37A,RQCD1,RUFY4,SLC11A1,SLC23A3,SMARCAL1,SPAG16,STK36,TMBIM1,TMEM169,TNP1,TNS1,TTLL4,UNC80,USP37,VIL1,VWC2L,WNT10A,WNT6,XRCC5,ZFAND2B,ZNF142"
TCGA.DM.A28A	2	209792206	243048759	10771	-0.645	SMALL-LOSS	NONFOCAL	235	Too-Many
TCGA.AA.A00L.01A	2	210867334	217315557	304	-0.6306	SMALL-LOSS	NONFOCAL	21	"ABCA12,ACADL,ATIC,BARD1,CPS1,ERBB4,FN1,IKZF2,KANSL1L,LANCL1,LOC100130451,MARCH4,MREG,MYL1,PECR,RPE,SMARCAL1,SPAG16,TMEM169,VWC2L,XRCC5"
TCGA.AA.A02F.01A	2	214012400	242716298	1850	-0.7243	SMALL-LOSS	NONFOCAL	223	Too-Many
TCGA.AG.3909.01A	2	219924827	220414387	191	-0.9069	SMALL-LOSS	NONFOCAL	23	"ABCB6,ANKZF1,ASIC4,ATG9A,CHPF,CNPPD1,DES,DNAJB2,DNPEP,FAM134A,GLB1L,GMPPA,IHH,LOC100996693,NHEJ1,PTPRN,RESP18,SLC23A3,SPEG,STK16,TMEM198,TUBA4A,ZFAND2B"
TCGA.AA.A00N.01A	2	220043607	220238952	106	-1.2453	SMALL-LOSS	NONFOCAL	12	"ABCB6,ANKZF1,ATG9A,DNAJB2,DNPEP,FAM134A,GLB1L,PTPRN,RESP18,STK16,TUBA4A,ZFAND2B"
TCGA.AA.A00D.01A	2	220402606	231103434	300	-0.6198	SMALL-LOSS	NONFOCAL	43	"ACSL3,AGFG1,AP1S3,ASIC4,C2orf83,CCDC140,CCL20,CHPF,COL4A3,COL4A4,CUL3,DAW1,DNER,DOCK10,EPHA4,FAM124B,FARSB,FBXO36,INHA,IRS1,KCNE4,MFF,MOGAT1,MRPL44,NYAP2,OBSL1,PAX3,PID1,RHBDD1,SCG2,SERPINE2,SGPP2,SLC16A14,SLC19A3,SLC4A3,SP110,SP140,SPHKAP,STK11IP,TM4SF20,TMEM198,TRIP12,WDFY1"
TCGA.CA.5254	2	223669374	241706226	5984	-0.5171	SMALL-LOSS	NONFOCAL	125	Too-Many
TCGA.AA.3664	2	226142507	243048759	5333	-0.8207	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.D5.5538	2	229387416	233780185	1222	-0.6554	SMALL-LOSS	NONFOCAL	40	"ALPI,ALPP,ALPPL2,ARMC9,B3GNT7,C2orf57,C2orf72,C2orf82,CAB39,CHRND,CHRNG,COPS7B,DIS3L2,DNER,ECEL1,EFHD1,EIF4E2,FBXO36,GIGYF2,GPR55,HTR2B,ITM2C,KCNJ13,NCL,NGEF,NMUR1,NPPC,PDE6D,PID1,PRSS56,PSMD1,PTMA,SLC16A14,SP100,SP110,SP140,SP140L,SPATA3,TIGD1,TRIP12"
TCGA.AA.3660	2	231651831	236034498	1442	-0.5887	SMALL-LOSS	NONFOCAL	53	"ALPI,ALPP,ALPPL2,ARL4C,ARMC9,ATG16L1,B3GNT7,C2orf57,C2orf72,C2orf82,CAB39,CHRND,CHRNG,COPS7B,DGKD,DIS3L2,DNAJB3,ECEL1,EFHD1,EIF4E2,GIGYF2,GPR55,HJURP,HTR2B,INPP5D,ITM2C,KCNJ13,MROH2A,NCL,NEU2,NGEF,NMUR1,NPPC,PDE6D,PRSS56,PSMD1,PTMA,SAG,SH3BP4,SPATA3,SPP2,TIGD1,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.G4.6322	2	232013303	234879852	827	-0.9211	SMALL-LOSS	NONFOCAL	44	"ALPI,ALPP,ALPPL2,ARMC9,ATG16L1,B3GNT7,C2orf57,C2orf82,CHRND,CHRNG,COPS7B,DGKD,DIS3L2,DNAJB3,ECEL1,EFHD1,EIF4E2,GIGYF2,HJURP,INPP5D,KCNJ13,MROH2A,NCL,NEU2,NGEF,NMUR1,NPPC,PDE6D,PRSS56,PSMD1,PTMA,SAG,TIGD1,TRPM8,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9,USP40"
TCGA.AA.A00N.01A	2	234621617	234687969	12	-0.677	SMALL-LOSS	NONFOCAL	11	"DNAJB3,MROH2A,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.AG.3909.01A	2	234627415	234755999	14	-1.1596	SMALL-LOSS	NONFOCAL	12	"DNAJB3,HJURP,MROH2A,UGT1A1,UGT1A10,UGT1A3,UGT1A4,UGT1A5,UGT1A6,UGT1A7,UGT1A8,UGT1A9"
TCGA.A6.2684	2	235900170	241969032	1943	-0.5967	SMALL-LOSS	NONFOCAL	44	"ACKR3,AGAP1,AGXT,ANKMY1,AQP12A,AQP12B,ASB1,ASB18,C2orf54,CAPN10,COL6A3,COPS8,DUSP28,ESPNL,FAM132B,GBX2,GPC1,GPR35,HDAC4,HES6,ILKAP,IQCA1,KIF1A,KLHL30,LRRFIP1,MLPH,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PER2,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,SCLY,SH3BP4,SNED1,TRAF3IP1,TWIST2,UBE2F"
TCGA.A6.5661	2	238140419	243048759	1438	-0.8232	SMALL-LOSS	NONFOCAL	55	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,ATG4B,BOK,C2orf54,CAPN10,COL6A3,D2HGDH,DTYMK,DUSP28,ESPNL,FAM132B,FARP2,GAL3ST2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,ING5,KIF1A,KLHL30,LRRFIP1,MLPH,MTERF4,MYEOV2,NDUFA10,NEU4,OR6B2,OR6B3,OTOS,PASK,PDCD1,PER2,PPP1R7,PRLH,PRR21,RAB17,RAMP1,RBM44,RNPEPL1,RTP5,SCLY,SEPT2,SNED1,STK25,THAP4,TRAF3IP1,TWIST2,UBE2F"
TCGA.A6.3808.01A	2	238267618	240957191	243	-0.555	SMALL-LOSS	NONFOCAL	20	"ASB1,COL6A3,ESPNL,FAM132B,HDAC4,HES6,ILKAP,KLHL30,LRRFIP1,MLPH,NDUFA10,PER2,PRLH,RAB17,RAMP1,RBM44,SCLY,TRAF3IP1,TWIST2,UBE2F"
TCGA.AA.A01Q.01A	2	239140500	241513882	119	-0.5799	SMALL-LOSS	NONFOCAL	16	"ANKMY1,ASB1,DUSP28,GPC1,HDAC4,HES6,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PER2,PRR21,RNPEPL1,TRAF3IP1,TWIST2"
TCGA.AA.3544	2	240601165	241644810	347	-0.6634	SMALL-LOSS	NONFOCAL	14	"ANKMY1,AQP12A,AQP12B,CAPN10,DUSP28,GPC1,GPR35,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PRR21,RNPEPL1"
TCGA.A6.2678	2	240996041	243048759	462	-0.806	SMALL-LOSS	NONFOCAL	32	"AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ATG4B,BOK,C2orf54,CAPN10,D2HGDH,DTYMK,DUSP28,FARP2,GAL3ST2,GPC1,GPR35,HDLBP,ING5,KIF1A,MTERF4,MYEOV2,NEU4,OTOS,PASK,PDCD1,PPP1R7,RNPEPL1,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.A6.3808.01A	2	241680639	242842428	311	-0.5712	SMALL-LOSS	NONFOCAL	22	"AGXT,ANO7,ATG4B,BOK,C2orf54,D2HGDH,DTYMK,FARP2,GAL3ST2,HDLBP,ING5,KIF1A,MTERF4,NEU4,PASK,PDCD1,PPP1R7,RTP5,SEPT2,SNED1,STK25,THAP4"
TCGA.CM.5341	3	70894	7164068	3793	-0.7	SMALL-LOSS	NONFOCAL	14	"ARL8B,BHLHE40,CHL1,CNTN4,CNTN6,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LRRN1,SETMAR,SUMF1,TRNT1"
TCGA.AA.3870	3	70894	12180287	6028	-0.6025	SMALL-LOSS	NONFOCAL	57	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IL5RA,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TRNT1,TTLL3,VGLL4,VHL"
TCGA.AA.3679	3	70894	14480777	6892	-0.7675	SMALL-LOSS	NONFOCAL	76	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAND2,CAV3,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,CPNE9,CRBN,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,GHRL,GRM7,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,MKRN2,MKRN2OS,MTMR14,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.AG.3727	3	70894	15807724	7326	-0.8128	SMALL-LOSS	NONFOCAL	91	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CHL1,CIDEC,CNTN4,CNTN6,COLQ,CPNE9,CRBN,CRELD1,EAF1,EDEM1,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IL5RA,IQSEC1,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXTR,PPARG,PRRT3,RAD18,RAF1,RBSN,RPL32,RPUSD3,SEC13,SETD5,SETMAR,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,THUMPD3,TIMP4,TMEM40,TMEM43,TRNT1,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.D5.6932	3	70894	19467039	8316	-0.6298	SMALL-LOSS	NONFOCAL	101	Too-Many
TCGA.AG.4021	3	70894	24432820	10118	-0.7564	SMALL-LOSS	NONFOCAL	113	Too-Many
TCGA.AA.3860	3	70894	60359317	21022	-0.6646	SMALL-LOSS	NONFOCAL	440	Too-Many
TCGA.D5.6531	3	70894	60470010	21101	-0.5727	SMALL-LOSS	NONFOCAL	440	Too-Many
TCGA.AG.3584	3	70894	85815227	29661	-0.6835	SMALL-LOSS	NONFOCAL	482	Too-Many
TCGA.NH.A6GA	3	70894	105716009	33292	-0.6899	SMALL-LOSS	NONFOCAL	538	Too-Many
TCGA.AA.A004.01A	3	361417	50223330	2911	-0.5154	SMALL-LOSS	NONFOCAL	332	Too-Many
TCGA.AZ.4614	3	1785599	60103407	19726	-0.8139	SMALL-LOSS	NONFOCAL	438	Too-Many
TCGA.AA.3979	3	2428481	60264381	19649	-1.0232	SMALL-LOSS	NONFOCAL	438	Too-Many
TCGA.AA.3972	3	3304981	11979401	4195	-0.8733	SMALL-LOSS	NONFOCAL	50	"ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,CAMK1,CAV3,CIDEC,CPNE9,CRELD1,EDEM1,EMC3,FANCD2,FANCD2OS,GHRL,GRM7,HRH1,IL17RC,IL17RE,IRAK2,ITPR1,JAGN1,LHFPL4,LMCD1,LOC401052,LRRN1,MTMR14,OGG1,OXTR,PRRT3,RAD18,RPUSD3,SEC13,SETD5,SETMAR,SLC6A1,SLC6A11,SRGAP3,SSUH2,SUMF1,TADA3,TAMM41,TATDN2,THUMPD3,TTLL3,VGLL4,VHL"
TCGA.CM.5862	3	4422398	20437607	6136	-0.9329	SMALL-LOSS	NONFOCAL	98	"ANKRD28,ARL8B,ARPC4,ARPC4-TTLL3,ATG7,ATP2B2,BHLHE40,BRK1,BRPF1,BTD,C3orf20,CAMK1,CAND2,CAPN7,CAV3,CCDC174,CHCHD4,CIDEC,COLQ,CPNE9,CRELD1,DAZL,DPH3,EAF1,EDEM1,EFHB,EMC3,FANCD2,FANCD2OS,FBLN2,FGD5,GALNT15,GHRL,GRIP2,GRM7,HACL1,HDAC11,HRH1,IL17RC,IL17RE,IQSEC1,IRAK2,ITPR1,JAGN1,KAT2B,KCNH8,LHFPL4,LMCD1,LOC339862,LOC401052,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,MTMR14,NR2C2,NUP210,OGG1,OXNAD1,OXTR,PLCL2,PP2D1,PPARG,PRRT3,RAB5A,RAD18,RAF1,RBSN,RFTN1,RPL32,RPUSD3,SATB1,SEC13,SETD5,SGOL1,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SRGAP3,SSUH2,SUMF1,SYN2,TADA3,TAMM41,TATDN2,TBC1D5,THUMPD3,TIMP4,TMEM40,TMEM43,TSEN2,TTLL3,VGLL4,VHL,WNT7A,XPC"
TCGA.A6.3808.01A	3	9972022	10301804	89	-0.6595	SMALL-LOSS	NONFOCAL	11	"BRK1,CRELD1,EMC3,FANCD2,FANCD2OS,IL17RC,IRAK2,LOC401052,PRRT3,TATDN2,VHL"
TCGA.AA.A00D.01A	3	10219514	16535221	424	-0.5353	SMALL-LOSS	NONFOCAL	50	"ANKRD28,ATG7,ATP2B2,BTD,C3orf20,CAND2,CAPN7,CCDC174,CHCHD4,COLQ,DPH3,EAF1,FBLN2,FGD5,GALNT15,GHRL,GRIP2,HACL1,HDAC11,HRH1,IQSEC1,IRAK2,LSM3,METTL6,MKRN2,MKRN2OS,MRPS25,NR2C2,NUP210,OXNAD1,PPARG,RAF1,RBSN,RFTN1,RPL32,SEC13,SH3BP5,SLC6A1,SLC6A11,SLC6A6,SYN2,TAMM41,TATDN2,TIMP4,TMEM40,TMEM43,TSEN2,VGLL4,WNT7A,XPC"
TCGA.AA.3870	3	12530412	37149446	8390	-0.594	SMALL-LOSS	NONFOCAL	94	"ANKRD28,ARPP21,AZI2,BTD,C3orf20,CAND2,CAPN7,CCDC174,CCR4,CHCHD4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,COLQ,CRTAP,DAZL,DCLK3,DPH3,DYNC1LI1,EAF1,EFHB,EOMES,EPM2AIP1,FBLN2,FBXL2,FGD5,GADL1,GALNT15,GLB1,GPD1L,GRIP2,HACL1,HDAC11,IQSEC1,KAT2B,KCNH8,LOC339862,LRRC3B,LRRFIP2,LSM3,METTL6,MKRN2,MKRN2OS,MLH1,MRPS25,NEK10,NGLY1,NKIRAS1,NR1D2,NR2C2,NUP210,OSBPL10,OXNAD1,OXSM,PDCD6IP,PLCL2,PP2D1,RAB5A,RAF1,RARB,RBMS3,RBSN,RFTN1,RPL15,RPL32,SATB1,SGOL1,SH3BP5,SLC4A7,SLC6A6,STAC,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMEM40,TMEM43,TMPPE,TOP2B,TRANK1,TRIM71,TSEN2,UBE2E1,UBE2E2,UBP1,WNT7A,XPC,ZCWPW2,ZNF385D,ZNF860"
TCGA.DM.A1HA	3	16785647	33805560	5754	-0.9161	SMALL-LOSS	NONFOCAL	49	"AZI2,CCR4,CLASP2,CMC1,CMTM6,CMTM7,CMTM8,CNOT10,CRTAP,DYNC1LI1,EFHB,EOMES,FBXL2,GADL1,GLB1,GPD1L,KAT2B,KCNH8,LOC339862,LRRC3B,NEK10,NGLY1,NKIRAS1,NR1D2,OSBPL10,OXSM,PLCL2,PP2D1,RAB5A,RARB,RBMS3,RPL15,SATB1,SGOL1,SLC4A7,STT3B,SUSD5,TBC1D5,TGFBR2,THRB,TMPPE,TOP2B,TRIM71,UBE2E1,UBE2E2,UBP1,ZCWPW2,ZNF385D,ZNF860"
TCGA.AA.A00D.01A	3	17051155	23631187	104	-0.6428	SMALL-LOSS	NONFOCAL	12	"EFHB,KAT2B,KCNH8,LOC339862,PLCL2,PP2D1,RAB5A,SATB1,SGOL1,TBC1D5,UBE2E2,ZNF385D"
TCGA.CM.5862	3	21731566	116113737	27195	-0.9377	SMALL-LOSS	NONFOCAL	483	Too-Many
TCGA.AA.A00D.01A	3	24164347	31917873	152	-0.6695	SMALL-LOSS	NONFOCAL	17	"AZI2,CMC1,EOMES,GADL1,LRRC3B,NEK10,NGLY1,OSBPL10,OXSM,RARB,RBMS3,SLC4A7,STT3B,TGFBR2,THRB,TOP2B,ZCWPW2"
TCGA.A6.6138	3	37987773	38929424	289	-0.534	SMALL-LOSS	NONFOCAL	15	"ACAA1,ACVR2B,CTDSPL,DLEC1,EXOG,MYD88,OXSR1,PLCD1,SCN10A,SCN11A,SCN5A,SLC22A13,SLC22A14,VILL,XYLB"
TCGA.DM.A28A	3	40056506	46466922	1914	-0.6942	SMALL-LOSS	NONFOCAL	63	"ABHD5,ACKR2,ANO10,CCDC13,CCK,CCR1,CCR2,CCR3,CCR5,CCR9,CCRL2,CDCP1,CLEC3B,CTNNB1,CXCR6,CYP8B1,EIF1B,ENTPD3,EXOSC7,FAM198A,FYCO1,HHATL,HIGD1A,KIAA1143,KIF15,KLHL40,KRBOX1,LARS2,LIMD1,LYZL4,LZTFL1,MYRIP,NKTR,POMGNT2,RPL14,SACM1L,SEC22C,SLC6A20,SNRK,SS18L2,TCAIM,TGM4,TMEM158,TMEM42,TOPAZ1,TRAK1,ULK4,VIPR1,XCR1,ZBTB47,ZDHHC3,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF619,ZNF620,ZNF621,ZNF660,ZNF662,ZNF852"
TCGA.EI.6508	3	41540997	61357677	5676	-0.6728	SMALL-LOSS	NONFOCAL	251	Too-Many
TCGA.AM.5820	3	41742134	61124332	5520	-0.6413	SMALL-LOSS	NONFOCAL	251	Too-Many
TCGA.AG.3581	3	42401032	65572697	7459	-0.615	SMALL-LOSS	NONFOCAL	260	Too-Many
TCGA.AF.2693	3	42408421	63095144	6211	-0.5809	SMALL-LOSS	NONFOCAL	252	Too-Many
TCGA.AY.A69D	3	42944200	56242800	3168	-0.7866	SMALL-LOSS	NONFOCAL	211	Too-Many
TCGA.NH.A8F8	3	44408396	74300893	10357	-0.5937	SMALL-LOSS	NONFOCAL	263	Too-Many
TCGA.A6.3808.01A	3	44408929	44839309	52	-0.6376	SMALL-LOSS	NONFOCAL	11	"KIAA1143,KIF15,TCAIM,ZKSCAN7,ZNF197,ZNF35,ZNF445,ZNF501,ZNF502,ZNF660,ZNF852"
TCGA.DM.A1DA	3	46622456	59920911	3231	-1.2031	SMALL-LOSS	NONFOCAL	193	Too-Many
TCGA.DM.A28H	3	46666792	50098336	339	-0.6839	SMALL-LOSS	NONFOCAL	82	"ALS2CL,AMIGO3,AMT,APEH,ARIH2,ARIH2OS,ATRIP,BSN,C3orf62,C3orf84,CAMKV,CAMP,CCDC12,CCDC36,CCDC51,CCDC71,CDC25A,CDHR4,CELSR3,COL7A1,CSPG5,DAG1,DALRD3,DHX30,ELP6,FAM212A,FBXW12,GMPPB,GPX1,IMPDH2,IP6K1,IP6K2,KIF9,KLHDC8B,KLHL18,LAMB2,LOC100132146,MAP4,MON1A,MST1,MST1R,MYL3,NBEAL2,NCKIPSD,NDUFAF3,NICN1,NME6,P4HTM,PFKFB4,PLXNB1,PRKAR2A,PRSS42,PRSS45,PRSS46,PRSS50,PTH1R,PTPN23,QARS,QRICH1,RBM6,RHOA,RNF123,SCAP,SETD2,SHISA5,SLC25A20,SLC26A6,SMARCC1,SPINK8,TCTA,TMA7,TMEM89,TMIE,TRAIP,TREX1,UBA7,UCN2,UQCRC1,USP19,USP4,WDR6,ZNF589"
TCGA.AG.3598	3	48105527	49410263	125	-0.9929	SMALL-LOSS	NONFOCAL	43	"ARIH2,ARIH2OS,ATRIP,C3orf62,C3orf84,CAMP,CCDC36,CCDC51,CCDC71,CDC25A,CELSR3,COL7A1,DALRD3,FBXW12,GPX1,IMPDH2,IP6K2,KLHDC8B,LAMB2,MAP4,NCKIPSD,NDUFAF3,NME6,P4HTM,PFKFB4,PLXNB1,PRKAR2A,QARS,QRICH1,RHOA,SHISA5,SLC25A20,SLC26A6,SPINK8,TMA7,TMEM89,TREX1,UCN2,UQCRC1,USP19,USP4,WDR6,ZNF589"
TCGA.EI.6509	3	48152658	49460406	128	-0.8558	SMALL-LOSS	NONFOCAL	45	"AMT,ARIH2,ARIH2OS,ATRIP,C3orf62,C3orf84,CAMP,CCDC36,CCDC51,CCDC71,CDC25A,CELSR3,COL7A1,DALRD3,FBXW12,GPX1,IMPDH2,IP6K2,KLHDC8B,LAMB2,NCKIPSD,NDUFAF3,NICN1,NME6,P4HTM,PFKFB4,PLXNB1,PRKAR2A,QARS,QRICH1,RHOA,SHISA5,SLC25A20,SLC26A6,SPINK8,TCTA,TMA7,TMEM89,TREX1,UCN2,UQCRC1,USP19,USP4,WDR6,ZNF589"
TCGA.DY.A1DG	3	48448913	53946833	799	-0.5569	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.A6.3808.01A	3	48692425	49719729	216	-1.0698	SMALL-LOSS	NONFOCAL	30	"AMT,APEH,ARIH2,ARIH2OS,BSN,C3orf62,C3orf84,CCDC36,CCDC71,CELSR3,DAG1,DALRD3,GPX1,IMPDH2,IP6K2,KLHDC8B,LAMB2,NCKIPSD,NDUFAF3,NICN1,P4HTM,PRKAR2A,QARS,QRICH1,RHOA,SLC25A20,TCTA,USP19,USP4,WDR6"
TCGA.DM.A1HA	3	48997424	60323314	3316	-0.9761	SMALL-LOSS	NONFOCAL	147	Too-Many
TCGA.AA.A00N.01A	3	49084464	49463677	102	-0.6331	SMALL-LOSS	NONFOCAL	15	"AMT,C3orf62,C3orf84,CCDC36,CCDC71,GPX1,KLHDC8B,LAMB2,NICN1,QARS,QRICH1,RHOA,TCTA,USP19,USP4"
TCGA.CM.6675	3	49407864	60691604	3541	-1.0594	SMALL-LOSS	NONFOCAL	130	Too-Many
TCGA.AG.4009.01A	3	50102414	50390660	92	-0.6446	SMALL-LOSS	NONFOCAL	18	"CYB561D2,GNAI2,GNAT1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,NAT6,NPRL2,RASSF1,RBM5,RBM6,SEMA3B,SEMA3F,SLC38A3,TUSC2,ZMYND10"
TCGA.CK.5914.01A	3	50106064	50424924	123	-0.5876	SMALL-LOSS	NONFOCAL	20	"CACNA2D2,CYB561D2,GNAI2,GNAT1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,NAT6,NPRL2,RASSF1,RBM5,RBM6,SEMA3B,SEMA3F,SLC38A3,TMEM115,TUSC2,ZMYND10"
TCGA.AA.A00N.01A	3	50155717	50431492	100	-0.6702	SMALL-LOSS	NONFOCAL	19	"CACNA2D2,CYB561D2,GNAI2,GNAT1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,NAT6,NPRL2,RASSF1,RBM5,SEMA3B,SEMA3F,SLC38A3,TMEM115,TUSC2,ZMYND10"
TCGA.AA.A01Q.01A	3	50197005	50378812	56	-0.7332	SMALL-LOSS	NONFOCAL	14	"GNAI2,GNAT1,HYAL1,HYAL2,HYAL3,IFRD2,LSMEM2,NAT6,RASSF1,SEMA3B,SEMA3F,SLC38A3,TUSC2,ZMYND10"
TCGA.AG.3732	3	50483436	79810689	10556	-0.5613	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.AG.3598	3	50681157	52367931	173	-0.9837	SMALL-LOSS	NONFOCAL	30	"ABHD14A,ABHD14B,ACY1,ALAS1,DNAH1,DOCK3,DUSP7,GLYCTK,GPR62,GRM2,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,MANF,MAPKAPK3,PARP3,PCBP4,POC1A,PPM1M,RAD54L2,RBM15B,RPL29,RRP9,TEX264,TLR9,TWF2,VPRBP,WDR82"
TCGA.AD.6899	3	51625081	66296569	5885	-0.6489	SMALL-LOSS	NONFOCAL	96	"ABHD14A,ABHD14B,ABHD6,ACOX2,ACTR8,ACY1,ADAMTS9,ALAS1,APPL1,ARF4,ARHGEF3,ASB14,ATXN7,BAP1,C3orf14,C3orf67,CACNA1D,CACNA2D3,CADPS,CCDC66,CHDH,DCP1A,DENND6A,DNAH1,DNAH12,DNASE1L3,DUSP7,ERC2,FAM107A,FAM208A,FAM3D,FEZF2,FHIT,FLNB,GLT8D1,GLYCTK,GNL3,GPR62,GRM2,HESX1,IL17RB,IL17RD,IQCF1,IQCF2,IQCF3,IQCF5,IQCF6,ITIH1,ITIH3,ITIH4,KCTD6,LRTM1,MAGI1,MUSTN1,NEK4,NISCH,NT5DC2,PARP3,PBRM1,PCBP4,PDE12,PDHB,PHF7,POC1A,PPM1M,PRICKLE2,PRKCD,PSMD6,PTPRG,PXK,RAD54L2,RFT1,RPL29,RPP14,RRP9,SELK,SEMA3G,SFMBT1,SLC25A26,SLMAP,SMIM4,SNTN,SPATA12,SPCS1,STAB1,SYNPR,TEX264,THOC7,TKT,TLR9,TMEM110,TMEM110-MUSTN1,TNNC1,TWF2,WDR82,WNT5A"
TCGA.AA.A01Q.01A	3	51975387	52269007	57	-0.7657	SMALL-LOSS	NONFOCAL	13	"ABHD14A,ABHD14B,ACY1,ALAS1,DUSP7,GPR62,PARP3,PCBP4,POC1A,RPL29,RRP9,TLR9,TWF2"
TCGA.AA.3514	3	52210699	52843612	98	-0.7536	SMALL-LOSS	NONFOCAL	22	"ALAS1,BAP1,DNAH1,GLT8D1,GLYCTK,GNL3,ITIH1,ITIH3,NEK4,NISCH,NT5DC2,PBRM1,PHF7,PPM1M,SEMA3G,SMIM4,SPCS1,STAB1,TLR9,TNNC1,TWF2,WDR82"
TCGA.AA.3861.01A	3	53220569	56593512	170	-0.5511	SMALL-LOSS	NONFOCAL	13	"ACTR8,CACNA1D,CACNA2D3,CCDC66,CHDH,DCP1A,ERC2,IL17RB,LRTM1,PRKCD,SELK,TKT,WNT5A"
TCGA.AA.3862.01A	3	53220569	56593512	171	-0.6356	SMALL-LOSS	NONFOCAL	13	"ACTR8,CACNA1D,CACNA2D3,CCDC66,CHDH,DCP1A,ERC2,IL17RB,LRTM1,PRKCD,SELK,TKT,WNT5A"
TCGA.AA.A00D.01A	3	57826991	64084675	243	-0.5292	SMALL-LOSS	NONFOCAL	23	"ABHD6,ACOX2,ATXN7,C3orf14,C3orf67,CADPS,DNASE1L3,FAM107A,FAM3D,FEZF2,FHIT,FLNB,KCTD6,PDHB,PRICKLE2,PSMD6,PTPRG,PXK,RPP14,SLMAP,SNTN,SYNPR,THOC7"
TCGA.AZ.4614	3	60388321	88450878	9111	-0.8405	SMALL-LOSS	NONFOCAL	50	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AA.3860	3	60554520	69295950	3839	-0.6708	SMALL-LOSS	NONFOCAL	25	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FRMD4B,KBTBD8,LMOD3,LRIG1,MAGI1,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.AA.3979	3	60727325	67633419	3124	-1.0409	SMALL-LOSS	NONFOCAL	17	"ADAMTS9,ATXN7,C3orf14,CADPS,FEZF2,FHIT,KBTBD8,LRIG1,MAGI1,PRICKLE2,PSMD6,PTPRG,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7"
TCGA.CM.6675	3	60793399	90283950	9184	-1.077	SMALL-LOSS	NONFOCAL	51	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,C3orf38,CADM2,CADPS,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EOGT,EPHA3,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PDZRN3,POU1F1,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,ROBO1,ROBO2,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AM.5820	3	61136873	73240772	5030	-0.7105	SMALL-LOSS	NONFOCAL	35	"ADAMTS9,ARL6IP5,ATXN7,C3orf14,CADPS,EBLN2,EIF4E3,EOGT,FAM19A1,FAM19A4,FEZF2,FHIT,FOXP1,FRMD4B,GPR27,GXYLT2,KBTBD8,LMOD3,LRIG1,MAGI1,MITF,PPP4R2,PRICKLE2,PROK2,PSMD6,PTPRG,RYBP,SHQ1,SLC25A26,SNTN,SUCLG2,SYNPR,THOC7,TMF1,UBA3"
TCGA.AA.3979	3	67723155	90283950	6056	-1.0618	SMALL-LOSS	NONFOCAL	34	"ARL6IP5,C3orf38,CADM2,CGGBP1,CHMP2B,CNTN3,EBLN2,EIF4E3,EOGT,EPHA3,FAM19A1,FAM19A4,FOXP1,FRG2C,FRMD4B,GBE1,GPR27,GXYLT2,HTR1F,LMOD3,MITF,PDZRN3,POU1F1,PPP4R2,PROK2,ROBO1,ROBO2,RYBP,SHQ1,TMF1,UBA3,VGLL3,ZNF654,ZNF717"
TCGA.AA.A00D.01A	3	69985789	107940930	477	-0.5387	SMALL-LOSS	NONFOCAL	78	"ABI3BP,ADGRG7,ALCAM,ARL13B,ARL6,BBX,C3orf38,CADM2,CBLB,CCDC54,CD47,CEP97,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EBLN2,EIF4E3,EPHA3,EPHA6,FILIP1L,FOXP1,FRG2C,GABRR3,GBE1,GPR15,GPR27,GXYLT2,HTR1F,IFT57,IMPG2,LNP1,MINA,MITF,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,PDZRN3,POU1F1,PPP4R2,PROK2,PROS1,ROBO1,ROBO2,RPL24,RYBP,SENP7,SHQ1,ST3GAL6,STX19,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,VGLL3,ZBTB11,ZNF654,ZNF717,ZPLD1"
TCGA.AA.3811	3	73661343	115846600	9473	-0.5352	SMALL-LOSS	NONFOCAL	115	Too-Many
TCGA.AA.3850	3	73927205	106149318	6554	-0.66975	SMALL-LOSS	NONFOCAL	63	"ABI3BP,ADGRG7,ALCAM,ARL13B,ARL6,C3orf38,CADM2,CBLB,CEP97,CGGBP1,CHMP2B,CLDND1,CMSS1,CNTN3,COL8A1,CPOX,CRYBG3,DCBLD2,DHFRL1,EPHA3,EPHA6,FILIP1L,FRG2C,GABRR3,GBE1,GPR15,HTR1F,IMPG2,LNP1,MINA,NFKBIZ,NIT2,NSUN3,NXPE3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,PCNP,POU1F1,PROS1,ROBO1,ROBO2,RPL24,SENP7,ST3GAL6,STX19,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,VGLL3,ZBTB11,ZNF654,ZNF717,ZPLD1"
TCGA.AA.3844	3	74177840	99328203	4758	-0.5322	SMALL-LOSS	NONFOCAL	40	"ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CLDND1,CNTN3,CPOX,CRYBG3,DCBLD2,DHFRL1,EPHA3,EPHA6,FRG2C,GABRR3,GBE1,GPR15,HTR1F,MINA,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,POU1F1,PROS1,ROBO1,ROBO2,ST3GAL6,STX19,VGLL3,ZNF654,ZNF717"
TCGA.AA.3941	3	79132831	99329403	3496	-0.6176	SMALL-LOSS	NONFOCAL	36	"ARL13B,ARL6,C3orf38,CADM2,CGGBP1,CHMP2B,CLDND1,CPOX,CRYBG3,DCBLD2,DHFRL1,EPHA3,EPHA6,GABRR3,GBE1,GPR15,HTR1F,MINA,NSUN3,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,POU1F1,PROS1,ROBO1,ST3GAL6,STX19,VGLL3,ZNF654"
TCGA.AA.3664	3	96899706	98131883	276	-0.8139	SMALL-LOSS	NONFOCAL	13	"ARL6,CRYBG3,EPHA6,GABRR3,MINA,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K3,OR5K4"
TCGA.AA.A00L.01A	3	97664585	98492696	37	-0.8591	SMALL-LOSS	NONFOCAL	16	"CLDND1,CPOX,GABRR3,GPR15,MINA,OR5AC2,OR5H1,OR5H14,OR5H15,OR5H2,OR5H6,OR5K1,OR5K2,OR5K3,OR5K4,ST3GAL6"
TCGA.D5.5540	3	99987869	102132606	515	-0.7802	SMALL-LOSS	NONFOCAL	17	"ABI3BP,ADGRG7,CEP97,IMPG2,LNP1,NFKBIZ,NIT2,NXPE3,PCNP,RPL24,SENP7,TBC1D23,TFG,TMEM45A,TOMM70A,TRMT10C,ZBTB11"
TCGA.AA.3492	3	103348698	114790057	3233	-0.7883	SMALL-LOSS	NONFOCAL	51	"ABHD10,ALCAM,ATG3,ATP6V1A,BBX,BOC,BTLA,C3orf17,C3orf52,CBLB,CCDC54,CCDC80,CD200,CD200R1,CD200R1L,CD47,CD96,CFAP44,DPPA2,DPPA4,DRD3,DZIP3,GCSAM,GRAMD1C,GTPBP8,GUCA1C,HHLA2,IFT57,KIAA1407,KIAA1524,KIAA2018,MORC1,MYH15,NAA50,PHLDB2,PLCXD2,PVRL3,QTRTD1,RETNLB,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TIGIT,TMPRSS7,TRAT1,ZBED2,ZBTB20,ZDHHC23,ZNF80"
TCGA.D5.5540	3	105092917	108697361	1046	-0.8223	SMALL-LOSS	NONFOCAL	14	"ALCAM,BBX,CBLB,CCDC54,CD47,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AA.A01S	3	107473613	110789091	935	-0.91145	SMALL-LOSS	NONFOCAL	13	"BBX,CD47,DPPA2,DPPA4,DZIP3,GUCA1C,HHLA2,IFT57,KIAA1524,MORC1,MYH15,RETNLB,TRAT1"
TCGA.AA.A00L.01A	3	108281923	112724372	238	-0.5745	SMALL-LOSS	NONFOCAL	28	"ABHD10,ATG3,BTLA,C3orf17,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,DPPA2,DPPA4,DZIP3,GCSAM,GTPBP8,GUCA1C,KIAA1524,MORC1,PHLDB2,PLCXD2,PVRL3,RETNLB,SLC35A5,SLC9C1,TAGLN3,TMPRSS7,TRAT1,ZBED2"
TCGA.AA.A00D.01A	3	108813707	113524184	268	-0.5692	SMALL-LOSS	NONFOCAL	30	"ABHD10,ATG3,ATP6V1A,BOC,BTLA,C3orf17,C3orf52,CCDC80,CD200,CD200R1,CD200R1L,CD96,CFAP44,DPPA2,DPPA4,GCSAM,GTPBP8,KIAA2018,MORC1,NAA50,PHLDB2,PLCXD2,PVRL3,SIDT1,SLC35A5,SLC9C1,SPICE1,TAGLN3,TMPRSS7,ZBED2"
TCGA.AA.A00D.01A	3	113785002	119156602	62	-0.5543	SMALL-LOSS	NONFOCAL	13	"ARHGAP31,B4GALT4,C3orf30,DRD3,GAP43,IGSF11,LSAMP,QTRTD1,TIGIT,TMEM39A,UPK1B,ZBTB20,ZNF80"
TCGA.AA.A00D.01A	3	119207707	124653429	517	-0.5981	SMALL-LOSS	NONFOCAL	52	"ADCY5,ADPRH,ARGFX,CASR,CCDC14,CCDC58,CD80,CD86,COX17,CSTA,DIRC2,DTX3L,EAF2,FAM162A,FBXO40,FSTL1,GOLGB1,GPR156,GSK3B,GTF2E1,HACD2,HCLS1,HGD,HSPBAP1,ILDR1,IQCB1,ITGB5,KALRN,KPNA1,LRRC58,MAATS1,MUC13,MYLK,NDUFB4,NR1I2,PARP14,PARP15,PARP9,PDIA5,PLA1A,POGLUT1,POLQ,POPDC2,RABL3,ROPN1,SEC22A,SEMA5B,SLC15A2,STXBP5L,TIMMDC1,UMPS,WDR5B"
TCGA.AA.A00L.01A	3	121418599	122354716	117	-0.5642	SMALL-LOSS	NONFOCAL	15	"CASR,CCDC58,CD86,CSTA,DTX3L,EAF2,FAM162A,GOLGB1,ILDR1,IQCB1,KPNA1,PARP15,PARP9,SLC15A2,WDR5B"
TCGA.D5.5540	3	127521379	132211992	1208	-0.8818	SMALL-LOSS	NONFOCAL	40	"ACAD9,ACPP,ALG1L2,ASTE1,ATP2C1,CNBP,COL6A5,COL6A6,COPG1,CPNE4,DNAJB8,DNAJC13,EEFSEC,EFCAB12,EFCC1,GATA2,GP9,H1FOO,H1FX,HMCES,IFT122,ISY1,ISY1-RAB43,KBTBD12,KIAA1257,MBD4,MGLL,MRPL3,NEK11,NUDT16,PIK3R4,PLXND1,RAB43,RAB7A,RHO,RPN1,RUVBL1,SEC61A1,TMCC1,TRH"
TCGA.D5.6532	3	132844756	137662093	1326	-0.808	SMALL-LOSS	NONFOCAL	23	"AMOTL2,ANAPC13,BFSP2,C3orf36,CDV3,CEP63,EPHB1,IL20RB,KY,MSL2,NCK1,PCCB,PPP2R3A,RAB6B,RYK,SLC35G2,SLCO2A1,SOX14,SRPRB,STAG1,TF,TMEM108,TOPBP1"
TCGA.AA.A00D.01A	3	140419677	160037501	692	-0.5371	SMALL-LOSS	NONFOCAL	94	"AADAC,AADACL2,AGTR1,ANKUB1,ARHGEF26,ATP1B3,ATR,C3orf33,C3orf58,C3orf79,C3orf80,CCNL1,CHST2,CLRN1,COMMD2,CP,CPA3,CPB1,DHX36,EIF2A,ERICH6,GFM1,GK5,GMPS,GPR149,GPR171,GPR87,GRK7,GYG1,HLTF,HPS3,IFT80,IGSF10,IL12A,IQCJ,IQCJ-SCHIP1,KCNAB1,LEKR1,LXN,MBNL1,MED12L,MFSD1,MLF1,MME,P2RY1,P2RY12,P2RY13,P2RY14,PAQR9,PCOLCE2,PFN2,PLCH1,PLOD2,PLS1,PLSCR1,PLSCR2,PLSCR4,PLSCR5,PQLC2L,PTX3,PXYLP1,RAP2B,RARRES1,RASA2,RNF13,RNF7,RSRC1,SCHIP1,SELT,SERP1,SHOX2,SIAH2,SLC25A36,SLC33A1,SLC9A9,SPSB4,SSR3,SUCNR1,TFDP2,TIPARP,TM4SF1,TM4SF18,TM4SF4,TMEM14E,TRIM42,TRPC1,TSC22D2,U2SURP,VEPH1,WWTR1,XRN1,ZBTB38,ZIC1,ZIC4"
TCGA.CM.5862	3	141432063	144225644	807	-0.855	SMALL-LOSS	NONFOCAL	15	"ATP1B3,ATR,C3orf58,CHST2,GK5,GRK7,PAQR9,PCOLCE2,PLS1,RNF7,SLC9A9,TFDP2,TRPC1,U2SURP,XRN1"
TCGA.AA.3850	3	143166041	148578445	1562	-0.72955	SMALL-LOSS	NONFOCAL	11	"AGTR1,C3orf58,CPB1,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,SLC9A9,ZIC1,ZIC4"
TCGA.D5.5540	3	145449825	149615921	1203	-0.789	SMALL-LOSS	NONFOCAL	21	"AGTR1,ANKUB1,COMMD2,CP,CPA3,CPB1,GYG1,HLTF,HPS3,PLOD2,PLSCR1,PLSCR2,PLSCR4,PLSCR5,RNF13,TM4SF1,TM4SF18,TM4SF4,WWTR1,ZIC1,ZIC4"
TCGA.G4.6322	3	158485259	161660714	882	-0.5263	SMALL-LOSS	NONFOCAL	16	"ARL14,B3GALNT1,C3orf80,IFT80,IL12A,IQCJ,IQCJ-SCHIP1,KPNA4,MFSD1,NMD3,OTOL1,PPM1L,SCHIP1,SMC4,SPTSSB,TRIM59"
TCGA.A6.3808.01A	3	160095171	164704874	71	-0.7315	SMALL-LOSS	NONFOCAL	11	"ARL14,B3GALNT1,IFT80,KPNA4,NMD3,OTOL1,PPM1L,SI,SMC4,SPTSSB,TRIM59"
TCGA.AA.3844	3	161215449	169257855	1909	-0.5467	SMALL-LOSS	NONFOCAL	11	"BCHE,GOLIM4,MECOM,OTOL1,PDCD10,SERPINI1,SERPINI2,SI,SLITRK3,WDR49,ZBBX"
TCGA.AA.3966	3	163999390	173889618	2647	-1.0066	SMALL-LOSS	NONFOCAL	36	"ACTRT3,BCHE,CLDN11,ECT2,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,NLGN1,PDCD10,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SERPINI1,SERPINI2,SI,SKIL,SLC2A2,SLC7A14,SLITRK3,SPATA16,TMEM212,TNFSF10,TNIK,WDR49,ZBBX"
TCGA.D5.5540	3	173415795	183275018	2618	-0.8293	SMALL-LOSS	NONFOCAL	27	"ACTL6A,ATP11B,B3GNT5,CCDC39,DCUN1D1,DNAJC19,FXR1,GNB4,KCNMB2,KCNMB3,KLHL6,LAMP3,MCCC1,MCF2L2,MFN1,MRPL47,NAALADL2,NDUFB5,NLGN1,PEX5L,PIK3CA,SOX2,TBL1XR1,TTC14,USP13,ZMAT3,ZNF639"
TCGA.AA.A01K.01A	3	183770802	184289037	142	-0.6738	SMALL-LOSS	NONFOCAL	18	"ABCF3,ALG3,AP2M1,CAMK2N2,CHRD,CLCN2,DVL3,ECE2,EIF2B5,EIF4G1,EPHB3,FAM131A,HTR3C,HTR3E,POLR2H,PSMD2,THPO,VWA5B2"
TCGA.AA.A00O.01A	3	183818129	184085926	116	-0.5196	SMALL-LOSS	NONFOCAL	14	"ABCF3,ALG3,AP2M1,CAMK2N2,CLCN2,DVL3,ECE2,EIF2B5,EIF4G1,FAM131A,HTR3E,POLR2H,PSMD2,VWA5B2"
TCGA.AG.4009.01A	3	183961552	184298139	103	-0.8736	SMALL-LOSS	NONFOCAL	11	"ALG3,CAMK2N2,CHRD,CLCN2,ECE2,EIF4G1,EPHB3,FAM131A,POLR2H,PSMD2,THPO"
TCGA.F4.6459	3	185080297	197833757	3987	-0.549	SMALL-LOSS	NONFOCAL	87	"ACAP2,ADIPOQ,AHSG,APOD,ATP13A3,ATP13A4,ATP13A5,BCL6,BDH1,CCDC50,CEP19,CLDN1,CLDN16,CPN2,CRYGS,DGKG,DLG1,DNAJB11,EIF4A2,ETV5,FAM43A,FBXO45,FETUB,FGF12,FYTTD1,GMNC,GP5,HES1,HRASLS,HRG,IGF2BP2,IL1RAP,IQCG,KIAA0226,KNG1,LIPH,LMLN,LPP,LRCH3,LRRC15,LSG1,MAP3K13,MASP1,MB21D2,MFI2,MUC20,MUC4,NCBP2,NRROS,OPA1,OSTN,P3H2,PAK2,PCYT1A,PIGX,PIGZ,PPP1R2,PYDC2,RFC4,RNF168,RPL35A,RPL39L,RTP1,RTP2,RTP4,SENP2,SENP5,SLC51A,SMCO1,SST,ST6GAL1,TBCCD1,TCTEX1D2,TFRC,TM4SF19,TMEM207,TMEM41A,TMEM44,TNK2,TP63,TPRG1,TRA2B,UBXN7,UTS2B,WDR53,XXYLT1,ZDHHC19"
TCGA.AA.A00K.01A	3	186522354	193376639	224	-0.559	SMALL-LOSS	NONFOCAL	29	"ADIPOQ,ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MASP1,MB21D2,OPA1,OSTN,P3H2,PYDC2,RFC4,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TMEM207,TP63,TPRG1,UTS2B"
TCGA.AA.A00D.01A	3	186571953	193272467	200	-0.6438	SMALL-LOSS	NONFOCAL	27	"ADIPOQ,ATP13A4,ATP13A5,BCL6,CCDC50,CLDN1,CLDN16,FGF12,GMNC,HRASLS,IL1RAP,LPP,MASP1,MB21D2,OSTN,P3H2,PYDC2,RPL39L,RTP1,RTP2,RTP4,SST,ST6GAL1,TMEM207,TP63,TPRG1,UTS2B"
TCGA.D5.5540	3	190469651	194177321	1166	-0.8372	SMALL-LOSS	NONFOCAL	16	"ATP13A3,ATP13A4,ATP13A5,CCDC50,CPN2,FGF12,GMNC,GP5,HES1,HRASLS,LRRC15,MB21D2,OPA1,OSTN,PYDC2,UTS2B"
TCGA.AG.3909.01A	4	53303	891772	92	-0.5649	SMALL-LOSS	NONFOCAL	13	"ATP5I,CPLX1,GAK,MFSD7,MYL5,PCGF3,PDE6B,PIGG,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A01K.01A	4	53303	6590723	459	-0.7207	SMALL-LOSS	NONFOCAL	71	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,LETM1,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.A02E.01A	4	53303	9485972	626	-0.617	SMALL-LOSS	NONFOCAL	113	Too-Many
TCGA.AA.A02H.01A	4	53303	10515046	619	-0.5521	SMALL-LOSS	NONFOCAL	118	Too-Many
TCGA.AA.A02F.01A	4	53303	15482281	606	-0.8092	SMALL-LOSS	NONFOCAL	125	Too-Many
TCGA.AG.A02G.01A	4	53303	22750413	984	-0.5231	SMALL-LOSS	NONFOCAL	147	Too-Many
TCGA.A6.5665	4	69712	1227468	179	-0.861	SMALL-LOSS	NONFOCAL	21	"ATP5I,CPLX1,CTBP1,DGKQ,FGFRL1,GAK,IDUA,MFSD7,MYL5,PCGF3,PDE6B,PIGG,RNF212,SLC26A1,SPON2,TMEM175,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AF.2693	4	69712	2433198	378	-0.6535	SMALL-LOSS	NONFOCAL	40	"ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,GAK,HAUS3,IDUA,LETM1,MAEA,MFSD7,MXD4,MYL5,NAT8L,NELFA,NKX1-1,PCGF3,PDE6B,PIGG,POLN,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,WHSC1,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.AA.3952	4	69712	6852113	2018	-0.6652	SMALL-LOSS	NONFOCAL	76	"ADD1,ADRA2C,ATP5I,BLOC1S4,C4orf48,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,KIAA0232,LETM1,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MFSD7,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,PPP2R2C,RGS12,RNF212,RNF4,S100P,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WFS1,WHSC1,ZBTB49,ZFYVE28,ZNF141,ZNF595,ZNF718,ZNF721,ZNF732"
TCGA.A6.2683	4	69712	9370689	2824	-0.8782	SMALL-LOSS	NONFOCAL	112	Too-Many
TCGA.A6.2672	4	69712	10281823	3188	-0.5182	SMALL-LOSS	NONFOCAL	116	Too-Many
TCGA.AA.3664	4	69712	12420959	4163	-0.8082	SMALL-LOSS	NONFOCAL	119	Too-Many
TCGA.A6.2671	4	69712	16021590	5656	-0.691	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.AA.3855	4	69712	16140604	5708	-0.6312	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.AA.3867	4	69712	27529026	9651	-0.5206	SMALL-LOSS	NONFOCAL	163	Too-Many
TCGA.F4.6808	4	69712	31685261	10876	-0.6786	SMALL-LOSS	NONFOCAL	164	Too-Many
TCGA.EI.7002	4	69712	34765696	11531	-1.2455	SMALL-LOSS	NONFOCAL	164	Too-Many
TCGA.AG.3591	4	69712	42334064	14136	-0.7393	SMALL-LOSS	NONFOCAL	201	Too-Many
TCGA.D5.6932	4	69712	43945603	14652	-0.632	SMALL-LOSS	NONFOCAL	204	Too-Many
TCGA.AA.3697	4	69712	48943442	15799	-0.6648	SMALL-LOSS	NONFOCAL	227	Too-Many
TCGA.AA.3679	4	69712	49057911	15819	-0.736	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.AY.5543	4	69712	49063478	15709	-0.6176	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.A6.5659	4	69712	49584108	14519	-0.586	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.AA.3693	4	69712	49584108	15822	-0.8638	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.AG.3893	4	69712	49584108	15690	-0.5602	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.AG.3732	4	69712	59663485	17956	-0.5628	SMALL-LOSS	NONFOCAL	263	Too-Many
TCGA.DY.A1H8	4	69712	65879423	19589	-0.9042	SMALL-LOSS	NONFOCAL	265	Too-Many
TCGA.4N.A93T	4	69712	85402556	25336	-0.7987	SMALL-LOSS	NONFOCAL	392	Too-Many
TCGA.AA.3549	4	69712	91257532	26942	-0.553	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.CM.6170	4	69712	92140284	27149	-0.6411	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.EI.6513	4	69712	102043609	29685	-0.7978	SMALL-LOSS	NONFOCAL	456	Too-Many
TCGA.F5.6813	4	69712	132688306	37596	-0.5301	SMALL-LOSS	NONFOCAL	555	Too-Many
TCGA.AA.3860	4	69712	151370135	42504	-0.6543	SMALL-LOSS	NONFOCAL	604	Too-Many
TCGA.A6.2684	4	69712	190921708	49783	-0.5218	SMALL-LOSS	NONFOCAL	733	Too-Many
TCGA.NH.A8F8	4	69712	190921708	54816	-0.5701	SMALL-LOSS	NONFOCAL	733	Too-Many
TCGA.AZ.4684.01A	4	331688	17707323	1138	-0.5771	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.AZ.4614	4	418833	6098798	1664	-0.8448	SMALL-LOSS	NONFOCAL	64	"ADD1,ADRA2C,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CRMP1,CTBP1,CYTL1,DGKQ,DOK7,EVC,EVC2,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HGFAC,HTT,IDUA,JAKMIP1,LETM1,LRPAP1,LYAR,MAEA,MFSD10,MFSD7,MSANTD1,MSX1,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,PCGF3,PDE6B,PIGG,POLN,RGS12,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,STK32B,STX18,TACC3,TMEM128,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZBTB49,ZFYVE28,ZNF721"
TCGA.AA.A00N.01A	4	494193	1850805	233	-0.8727	SMALL-LOSS	NONFOCAL	26	"ATP5I,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,GAK,IDUA,LETM1,MAEA,MFSD7,MYL5,NKX1-1,PCGF3,PDE6B,PIGG,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA"
TCGA.CK.5914.01A	4	494193	2355631	312	-0.7391	SMALL-LOSS	NONFOCAL	34	"ATP5I,C4orf48,CPLX1,CRIPAK,CTBP1,DGKQ,FAM53A,FGFR3,FGFRL1,GAK,HAUS3,IDUA,LETM1,MAEA,MFSD7,MXD4,MYL5,NAT8L,NELFA,NKX1-1,PCGF3,PDE6B,PIGG,POLN,RNF212,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,UVSSA,WHSC1,ZFYVE28"
TCGA.A6.A567	4	502910	10400155	3182	-1.0184	SMALL-LOSS	NONFOCAL	111	Too-Many
TCGA.A6.5661	4	509177	10275981	3115	-0.7913	SMALL-LOSS	NONFOCAL	111	Too-Many
TCGA.AA.3930.01A	4	663769	3236974	396	-0.5226	SMALL-LOSS	NONFOCAL	43	"ADD1,ATP5I,C4orf48,CFAP99,CPLX1,CRIPAK,CTBP1,DGKQ,FAM193A,FAM53A,FGFR3,FGFRL1,GAK,GRK4,HAUS3,HTT,IDUA,LETM1,MAEA,MFSD10,MFSD7,MXD4,MYL5,NAT8L,NELFA,NKX1-1,NOP14,PCGF3,PDE6B,POLN,RNF212,RNF4,SH3BP2,SLBP,SLC26A1,SPON2,TACC3,TMEM129,TMEM175,TNIP2,UVSSA,WHSC1,ZFYVE28"
TCGA.CM.5864	4	1051511	1792017	140	-0.7863	SMALL-LOSS	NONFOCAL	11	"CRIPAK,CTBP1,FAM53A,MAEA,NKX1-1,RNF212,SLBP,SPON2,TACC3,TMEM129,UVSSA"
TCGA.AF.3914.01A	4	1161213	1941334	86	-0.6516	SMALL-LOSS	NONFOCAL	13	"CRIPAK,CTBP1,FAM53A,FGFR3,LETM1,MAEA,NKX1-1,SLBP,SPON2,TACC3,TMEM129,UVSSA,WHSC1"
TCGA.A6.5665	4	1237013	10132046	2871	-0.5523	SMALL-LOSS	NONFOCAL	96	"ABLIM2,ACOX3,ADD1,ADRA2C,AFAP1,BLOC1S4,C4orf48,CCDC96,CFAP99,CPZ,CRIPAK,CRMP1,CTBP1,CYTL1,DEFB131,DOK7,DRD5,EVC,EVC2,FAM193A,FAM53A,FGFR3,GPR78,GRK4,GRPEL1,HAUS3,HGFAC,HMX1,HTRA3,HTT,JAKMIP1,KIAA0232,LETM1,LOC389199,LOC650293,LRPAP1,LYAR,MAEA,MAN2B2,MFSD10,MRFAP1,MRFAP1L1,MSANTD1,MSX1,MXD4,NAT8L,NELFA,NKX1-1,NOP14,NSG1,OTOP1,POLN,PPP2R2C,PSAPL1,RGS12,RNF4,S100P,SH3BP2,SH3TC1,SLBP,SLC2A9,SORCS2,STK32B,STX18,TACC3,TADA2B,TBC1D14,TMEM128,TMEM129,TNIP2,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,UVSSA,WDR1,WFS1,WHSC1,ZBTB49,ZFYVE28"
TCGA.AA.3870	4	1588664	49057911	15577	-0.5703	SMALL-LOSS	NONFOCAL	203	Too-Many
TCGA.CK.5914.01A	4	3221868	4458902	99	-0.6471	SMALL-LOSS	NONFOCAL	13	"ADRA2C,DOK7,HGFAC,HTT,LRPAP1,LYAR,MSANTD1,NSG1,OTOP1,RGS12,STX18,TMEM128,ZBTB49"
TCGA.AA.A00Q.01A	4	4242001	6114408	122	-0.5616	SMALL-LOSS	NONFOCAL	12	"CRMP1,CYTL1,EVC,EVC2,JAKMIP1,LYAR,MSX1,NSG1,STK32B,STX18,TMEM128,ZBTB49"
TCGA.A6.2686	4	5648715	9766748	1402	-0.9297	SMALL-LOSS	NONFOCAL	49	"ABLIM2,ACOX3,AFAP1,BLOC1S4,CCDC96,CPZ,CRMP1,DEFB131,EVC,EVC2,GPR78,GRPEL1,HMX1,HTRA3,JAKMIP1,KIAA0232,LOC389199,LOC650293,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,PSAPL1,S100P,SH3TC1,SORCS2,TADA2B,TBC1D14,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WFS1"
TCGA.CK.5914.01A	4	6279132	7817699	110	-0.5316	SMALL-LOSS	NONFOCAL	15	"AFAP1,BLOC1S4,CCDC96,GRPEL1,KIAA0232,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,PSAPL1,S100P,SORCS2,TADA2B,TBC1D14,WFS1"
TCGA.AA.A00Q.01A	4	6302347	7069641	53	-0.567	SMALL-LOSS	NONFOCAL	12	"BLOC1S4,CCDC96,GRPEL1,KIAA0232,MAN2B2,MRFAP1,MRFAP1L1,PPP2R2C,S100P,TADA2B,TBC1D14,WFS1"
TCGA.CM.6675	4	7463303	44173591	12386	-1.0338	SMALL-LOSS	NONFOCAL	123	Too-Many
TCGA.A6.3808.01A	4	8031331	9783657	80	-0.927	SMALL-LOSS	NONFOCAL	30	"ABLIM2,ACOX3,CPZ,DEFB131,DRD5,GPR78,HMX1,HTRA3,LOC650293,SH3TC1,TRMT44,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5"
TCGA.AA.3930.01A	4	8293086	73981505	2134	-0.5505	SMALL-LOSS	NONFOCAL	231	Too-Many
TCGA.D5.6923	4	8705386	10376056	431	-0.5598	SMALL-LOSS	NONFOCAL	25	"DEFB131,DRD5,HMX1,LOC650293,SLC2A9,USP17L10,USP17L11,USP17L12,USP17L13,USP17L15,USP17L17,USP17L18,USP17L19,USP17L20,USP17L21,USP17L22,USP17L24,USP17L25,USP17L26,USP17L27,USP17L28,USP17L29,USP17L30,USP17L5,WDR1"
TCGA.A6.A567	4	10403544	190921708	51167	-0.6782	SMALL-LOSS	NONFOCAL	617	Too-Many
TCGA.AG.A00Y.01A	4	13597445	55973864	1261	-0.5934	SMALL-LOSS	NONFOCAL	122	Too-Many
TCGA.AA.A02F.01A	4	15511715	57237580	1316	-0.6426	SMALL-LOSS	NONFOCAL	128	Too-Many
TCGA.A6.2671	4	16756815	42889864	8391	-0.6691	SMALL-LOSS	NONFOCAL	70	"ADGRA3,ANAPC4,APBB2,ARAP2,ATP8A1,BEND4,C4orf19,CCDC149,CCKAR,CHRNA9,CLRN2,DCAF16,DCAF4L1,DHX15,DTHD1,FAM114A1,FAM184B,GBA3,KCNIP4,KLB,KLF3,KLHL5,LAP3,LCORL,LDB2,LGI2,LIAS,LIMCH1,MED28,N4BP2,NCAPG,NSUN7,NWD2,PACRGL,PCDH7,PDS5A,PGM2,PHOX2B,PI4K2B,PPARGC1A,PTTG2,QDPR,RBM47,RBPJ,RELL1,RFC1,RHOH,RPL9,SEL1L3,SEPSECS,SHISA3,SLC30A9,SLC34A2,SLIT2,SMIM14,SMIM20,SOD3,STIM2,TBC1D1,TBC1D19,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19,ZCCHC4"
TCGA.AA.A00Q.01A	4	17805077	71503432	1349	-0.5536	SMALL-LOSS	NONFOCAL	166	Too-Many
TCGA.AA.3952	4	27066223	43945603	5212	-0.6151	SMALL-LOSS	NONFOCAL	41	"APBB2,ARAP2,ATP8A1,BEND4,C4orf19,CHRNA9,DCAF4L1,DTHD1,FAM114A1,GRXCR1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PCDH7,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AG.3612	4	29106146	49057911	5645	-0.8064	SMALL-LOSS	NONFOCAL	65	"APBB2,ARAP2,ATP10D,ATP8A1,BEND4,C4orf19,CHRNA9,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCAF4L1,DTHD1,FAM114A1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NFXL1,NIPAL1,NSUN7,NWD2,OCIAD1,OCIAD2,PCDH7,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLAIN2,SLC10A4,SLC30A9,SMIM14,TBC1D1,TEC,TLR1,TLR10,TLR6,TMEM156,TMEM33,TXK,UBE2K,UCHL1,UGDH,WDR19,YIPF7,ZAR1"
TCGA.F4.6808	4	33914067	47694798	4153	-0.6142	SMALL-LOSS	NONFOCAL	52	"APBB2,ARAP2,ATP10D,ATP8A1,BEND4,C4orf19,CHRNA9,COMMD8,CORIN,COX7B2,DCAF4L1,DTHD1,FAM114A1,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PDS5A,PGM2,PHOX2B,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SHISA3,SLC30A9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,TMEM33,UBE2K,UCHL1,UGDH,WDR19,YIPF7"
TCGA.AZ.4684.01A	4	37447189	41684312	298	-0.5607	SMALL-LOSS	NONFOCAL	30	"APBB2,C4orf19,CHRNA9,FAM114A1,KLB,KLF3,KLHL5,LIAS,LIMCH1,N4BP2,NSUN7,NWD2,PDS5A,PGM2,PTTG2,RBM47,RELL1,RFC1,RHOH,RPL9,SMIM14,TBC1D1,TLR1,TLR10,TLR6,TMEM156,UBE2K,UCHL1,UGDH,WDR19"
TCGA.AA.3496	4	39118268	40596825	336	-0.6216	SMALL-LOSS	NONFOCAL	14	"CHRNA9,KLB,KLHL5,LIAS,N4BP2,PDS5A,RBM47,RFC1,RHOH,RPL9,SMIM14,UBE2K,UGDH,WDR19"
TCGA.A6.3808.01A	4	39408573	41263730	129	-0.6203	SMALL-LOSS	NONFOCAL	14	"APBB2,CHRNA9,KLB,LIAS,N4BP2,NSUN7,PDS5A,RBM47,RHOH,RPL9,SMIM14,UBE2K,UCHL1,UGDH"
TCGA.AG.3885	4	39837127	42926038	1031	-1.2861	SMALL-LOSS	NONFOCAL	17	"APBB2,ATP8A1,BEND4,CHRNA9,DCAF4L1,GRXCR1,LIMCH1,N4BP2,NSUN7,PDS5A,PHOX2B,RBM47,RHOH,SHISA3,SLC30A9,TMEM33,UCHL1"
TCGA.AA.3941	4	42412686	47449994	1280	-0.6383	SMALL-LOSS	NONFOCAL	11	"ATP8A1,COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.AA.3850	4	42489465	47446465	1248	-0.77875	SMALL-LOSS	NONFOCAL	11	"ATP8A1,COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,YIPF7"
TCGA.AA.A00L.01A	4	42508996	48496101	198	-0.636	SMALL-LOSS	NONFOCAL	22	"ATP10D,ATP8A1,CNGA1,COMMD8,CORIN,COX7B2,GABRA2,GABRA4,GABRB1,GABRG1,GNPDA2,GRXCR1,GUF1,KCTD8,NFXL1,NIPAL1,SLAIN2,SLC10A4,TEC,TXK,YIPF7,ZAR1"
TCGA.A6.2671	4	45983377	64863135	4158	-0.5463	SMALL-LOSS	NONFOCAL	56	"AASDH,ADGRL3,ARL9,ATP10D,CEP135,CHIC2,CLOCK,CNGA1,COMMD8,CORIN,COX7B2,CWH43,DCUN1D4,ERVMER34-1,EXOC1,FIP1L1,FRYL,GABRA2,GABRA4,GABRB1,GABRG1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,LRRC66,NFXL1,NIPAL1,NMU,NOA1,OCIAD1,OCIAD2,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SGCB,SLAIN2,SLC10A4,SPATA18,SPINK2,SRD5A3,SRP72,TEC,THEGL,TMEM165,TXK,USP46,ZAR1"
TCGA.AA.3867	4	46677849	49054679	553	-0.5399	SMALL-LOSS	NONFOCAL	18	"ATP10D,CNGA1,COMMD8,CORIN,COX7B2,CWH43,FRYL,GABRA4,GABRB1,NFXL1,NIPAL1,OCIAD1,OCIAD2,SLAIN2,SLC10A4,TEC,TXK,ZAR1"
TCGA.AA.A00L.01A	4	48844591	56348888	205	-0.5573	SMALL-LOSS	NONFOCAL	21	"CHIC2,CLOCK,CWH43,DCUN1D4,ERVMER34-1,FIP1L1,GSX2,KDR,KIT,LNX1,LRRC66,OCIAD1,OCIAD2,PDGFRA,RASL11B,SCFD2,SGCB,SPATA18,SRD5A3,TMEM165,USP46"
TCGA.NH.A6GA	4	49584108	190921708	38955	-0.6519	SMALL-LOSS	NONFOCAL	505	Too-Many
TCGA.AG.A01Y	4	52696791	134487010	22175	-0.7196	SMALL-LOSS	NONFOCAL	328	Too-Many
TCGA.AA.3979	4	52696791	190921708	38893	-0.9109	SMALL-LOSS	NONFOCAL	505	Too-Many
TCGA.D5.6533	4	53325021	190791542	38658	-0.7316	SMALL-LOSS	NONFOCAL	500	Too-Many
TCGA.AA.A01Z	4	53351204	60402233	2260	-0.8514	SMALL-LOSS	NONFOCAL	31	"AASDH,ARL9,CEP135,CHIC2,CLOCK,ERVMER34-1,EXOC1,FIP1L1,GSX2,HOPX,IGFBP7,KDR,KIAA1211,KIT,LNX1,NMU,NOA1,PAICS,PDCL2,PDGFRA,POLR2B,PPAT,RASL11B,REST,SCFD2,SPINK2,SRD5A3,SRP72,THEGL,TMEM165,USP46"
TCGA.F4.6460	4	55011768	91655218	10581	-0.7674	SMALL-LOSS	NONFOCAL	186	Too-Many
TCGA.DM.A1DB	4	55074367	190921708	38372	-0.7271	SMALL-LOSS	NONFOCAL	493	Too-Many
TCGA.AF.2693	4	55324023	67495561	3552	-0.5218	SMALL-LOSS	NONFOCAL	25	"AASDH,ADGRL3,ARL9,CEP135,CLOCK,EPHA5,EXOC1,HOPX,IGFBP7,KDR,KIAA1211,KIT,NMU,NOA1,PAICS,PDCL2,POLR2B,PPAT,REST,SPINK2,SRD5A3,SRP72,TECRL,THEGL,TMEM165"
TCGA.A6.3808.01A	4	56446947	57839977	131	-0.8506	SMALL-LOSS	NONFOCAL	15	"AASDH,ARL9,CEP135,EXOC1,HOPX,KIAA1211,NMU,NOA1,PAICS,PDCL2,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.A02E.01A	4	56446947	57876479	133	-0.5857	SMALL-LOSS	NONFOCAL	16	"AASDH,ARL9,CEP135,EXOC1,HOPX,KIAA1211,NMU,NOA1,PAICS,PDCL2,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.F5.6863	4	56491886	63955483	2177	-0.6876	SMALL-LOSS	NONFOCAL	17	"AASDH,ADGRL3,ARL9,CEP135,EXOC1,HOPX,IGFBP7,KIAA1211,NMU,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.CK.5914.01A	4	57237580	57865733	68	-0.6831	SMALL-LOSS	NONFOCAL	11	"AASDH,ARL9,HOPX,NOA1,PAICS,POLR2B,PPAT,REST,SPINK2,SRP72,THEGL"
TCGA.AA.A02F.01A	4	57871754	69362324	193	-0.57	SMALL-LOSS	NONFOCAL	15	"ADGRL3,CENPC,EPHA5,GNRHR,IGFBP7,POLR2B,STAP1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,YTHDC1"
TCGA.AG.A00Y.01A	4	57906943	138452514	2907	-0.7024	SMALL-LOSS	NONFOCAL	296	Too-Many
TCGA.CK.4952.01A	4	62135498	70838017	259	-0.5424	SMALL-LOSS	NONFOCAL	27	"ADGRL3,CENPC,CSN1S1,CSN2,EPHA5,GNRHR,STAP1,SULT1B1,SULT1E1,TECRL,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,YTHDC1"
TCGA.D5.6536	4	67804889	90455727	6541	-0.654	SMALL-LOSS	NONFOCAL	157	Too-Many
TCGA.AA.3850	4	68215639	76173340	2007	-0.54225	SMALL-LOSS	NONFOCAL	70	"ADAMTS3,AFM,AFP,ALB,AMBN,AMTN,ANKRD17,AREG,BTC,CABS1,CENPC,COX18,CSN1S1,CSN2,CSN3,CXCL1,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,DCK,ENAM,EPGN,EREG,FDCSP,GC,GNRHR,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MTHFD2L,MUC7,NPFFR2,ODAM,PARM1,PF4,PF4V1,PPBP,PROL1,PRR27,RASSF6,RUFY3,SLC4A4,SMR3A,SMR3B,STAP1,STATH,SULT1B1,SULT1E1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.AA.A00L.01A	4	68511594	71498292	205	-0.645	SMALL-LOSS	NONFOCAL	37	"AMBN,AMTN,CABS1,CSN1S1,CSN2,CSN3,ENAM,FDCSP,GNRHR,HTN1,HTN3,MUC7,ODAM,PROL1,PRR27,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UBA6,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,YTHDC1"
TCGA.AA.A00D.01A	4	68619490	71630152	207	-0.6678	SMALL-LOSS	NONFOCAL	39	"AMBN,AMTN,CABS1,CSN1S1,CSN2,CSN3,ENAM,FDCSP,GNRHR,HTN1,HTN3,JCHAIN,MUC7,ODAM,PROL1,PRR27,RUFY3,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,TMPRSS11A,TMPRSS11B,TMPRSS11D,TMPRSS11E,TMPRSS11F,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7,UTP3,YTHDC1"
TCGA.A6.3808.01A	4	69340359	70460188	58	-0.5616	SMALL-LOSS	NONFOCAL	11	"TMPRSS11E,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B17,UGT2B28,UGT2B4,UGT2B7"
TCGA.AA.A02F.01A	4	69512771	74010407	283	-0.5557	SMALL-LOSS	NONFOCAL	40	"ADAMTS3,AMBN,AMTN,ANKRD17,CABS1,COX18,CSN1S1,CSN2,CSN3,DCK,ENAM,FDCSP,GC,GRSF1,HTN1,HTN3,JCHAIN,MOB1B,MUC7,NPFFR2,ODAM,PROL1,PRR27,RUFY3,SLC4A4,SMR3A,SMR3B,STATH,SULT1B1,SULT1E1,UGT2A1,UGT2A2,UGT2A3,UGT2B10,UGT2B11,UGT2B15,UGT2B28,UGT2B4,UGT2B7,UTP3"
TCGA.AA.A00Q.01A	4	71894982	78873616	362	-0.564	SMALL-LOSS	NONFOCAL	53	"ADAMTS3,AFM,AFP,ALB,ANKRD17,AREG,ART3,BTC,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CNOT6L,COX18,CXCL1,CXCL10,CXCL11,CXCL13,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,DCK,EPGN,EREG,FAM47E,FAM47E-STBD1,G3BP2,GC,MRPL1,MTHFD2L,NAAA,NPFFR2,NUP54,PARM1,PF4,PF4V1,PPBP,PPEF2,RASSF6,RCHY1,SCARB2,SDAD1,SEPT11,SHROOM3,SLC4A4,SOWAHB,STBD1,THAP6,USO1"
TCGA.AA.3930.01A	4	74010407	85693944	731	-0.5383	SMALL-LOSS	NONFOCAL	79	"AFM,AFP,AGPAT9,ALB,ANKRD17,ANTXR2,ANXA3,AREG,ART3,BMP2K,BMP3,BTC,C4orf22,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CDS1,CNOT6L,COPS4,COQ2,CXCL1,CXCL10,CXCL11,CXCL13,CXCL2,CXCL3,CXCL5,CXCL6,CXCL8,CXCL9,ENOPH1,EPGN,EREG,FAM175A,FAM47E,FAM47E-STBD1,FGF5,FRAS1,G3BP2,GK2,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MRPL1,MRPS18C,MTHFD2L,NAA11,NAAA,NKX6-1,NUP54,PAQR3,PARM1,PF4,PF4V1,PLAC8,PPBP,PPEF2,PRDM8,PRKG2,RASGEF1B,RASSF6,RCHY1,SCARB2,SCD5,SDAD1,SEC31A,SEPT11,SHROOM3,SOWAHB,STBD1,THAP6,THAP9,TMEM150C,USO1,WDFY3"
TCGA.AA.A02F.01A	4	74735136	115754715	1818	-0.67	SMALL-LOSS	NONFOCAL	187	Too-Many
TCGA.F5.6863	4	74998483	89963280	4535	-0.6235	SMALL-LOSS	NONFOCAL	91	"ABCG2,AFF1,AGPAT9,ANTXR2,ANXA3,AREG,ARHGAP24,ART3,BMP2K,BMP3,BTC,C4orf22,C4orf26,C4orf36,CCDC158,CCNG2,CCNI,CDKL2,CDS1,CNOT6L,COPS4,COQ2,CXCL10,CXCL11,CXCL13,CXCL9,DMP1,DSPP,ENOPH1,EPGN,EREG,FAM13A,FAM175A,FAM47E,FAM47E-STBD1,FGF5,FRAS1,G3BP2,GK2,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MRPL1,MRPS18C,MTHFD2L,NAA11,NAAA,NAP1L5,NKX6-1,NUDT9,NUP54,PAQR3,PARM1,PIGY,PKD2,PLAC8,PPEF2,PPM1K,PRDM8,PRKG2,PTPN13,PYURF,RASGEF1B,RCHY1,SCARB2,SCD5,SDAD1,SEC31A,SEPT11,SHROOM3,SLC10A6,SOWAHB,SPARCL1,SPP1,STBD1,THAP6,THAP9,TMEM150C,USO1,WDFY3"
TCGA.AA.3680	4	75507498	89293264	4273	-0.7106	SMALL-LOSS	NONFOCAL	80	"ABCG2,AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,ART3,BMP2K,BMP3,BTC,C4orf22,C4orf26,C4orf36,CCDC158,CCNG2,CCNI,CDKL2,CDS1,CNOT6L,COPS4,COQ2,CXCL10,CXCL11,CXCL13,CXCL9,DMP1,DSPP,ENOPH1,FAM175A,FAM47E,FAM47E-STBD1,FGF5,FRAS1,G3BP2,GK2,HELQ,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MRPL1,MRPS18C,NAA11,NAAA,NKX6-1,NUDT9,NUP54,PAQR3,PARM1,PKD2,PLAC8,PPEF2,PPM1K,PRDM8,PRKG2,PTPN13,RASGEF1B,RCHY1,SCARB2,SCD5,SDAD1,SEC31A,SEPT11,SHROOM3,SLC10A6,SOWAHB,SPARCL1,SPP1,STBD1,THAP6,THAP9,TMEM150C,USO1,WDFY3"
TCGA.G4.6322	4	76453148	78249881	699	-0.8143	SMALL-LOSS	NONFOCAL	23	"ART3,C4orf26,CCDC158,CCNG2,CCNI,CDKL2,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,G3BP2,NAAA,NUP54,PPEF2,SCARB2,SDAD1,SEPT11,SHROOM3,SOWAHB,STBD1,THAP6,USO1"
TCGA.AF.2693	4	76667708	190921708	32348	-0.5313	SMALL-LOSS	NONFOCAL	392	Too-Many
TCGA.DM.A28A	4	76763090	77794235	368	-0.6933	SMALL-LOSS	NONFOCAL	14	"ART3,CCDC158,CXCL10,CXCL11,CXCL9,FAM47E,FAM47E-STBD1,NAAA,NUP54,PPEF2,SCARB2,SDAD1,SHROOM3,STBD1"
TCGA.AA.A00L.01A	4	79475599	87080414	313	-0.5355	SMALL-LOSS	NONFOCAL	33	"AGPAT9,ANTXR2,ANXA3,ARHGAP24,BMP2K,BMP3,C4orf22,CDS1,COPS4,COQ2,ENOPH1,FAM175A,FGF5,GK2,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MAPK10,MRPS18C,NAA11,NKX6-1,PAQR3,PLAC8,PRDM8,PRKG2,RASGEF1B,SCD5,SEC31A,THAP9,TMEM150C,WDFY3"
TCGA.AA.A00Q.01A	4	79475599	103978911	862	-0.5531	SMALL-LOSS	NONFOCAL	100	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,ATOH1,BANK1,BMP2K,BMP3,BMPR1B,C4orf17,C4orf22,C4orf36,CCSER1,CDS1,CISD2,COPS4,COQ2,DAPP1,DDIT4L,DMP1,DNAJB14,DSPP,EIF4E,EMCN,ENOPH1,FAM13A,FAM175A,FGF5,GK2,GPRIN3,GRID2,H2AFZ,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPGDS,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LAMTOR3,LIN54,MANBA,MAPK10,MEPE,METAP1,MMRN1,MRPS18C,MTTP,NAA11,NAP1L5,NFKB1,NKX6-1,NUDT9,PAQR3,PDHA2,PDLIM5,PIGY,PKD2,PLAC8,PPM1K,PPP3CA,PRDM8,PRKG2,PTPN13,PYURF,RAP1GDS1,RASGEF1B,SCD5,SEC31A,SLC10A6,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,SPARCL1,SPP1,STPG2,THAP9,TIGD2,TMEM150C,TRMT10A,TSPAN5,UBE2D3,UNC5C,WDFY3"
TCGA.AA.A00D.01A	4	79494289	89189304	441	-0.529	SMALL-LOSS	NONFOCAL	50	"ABCG2,AFF1,AGPAT9,ANTXR2,ANXA3,ARHGAP24,BMP2K,BMP3,C4orf22,C4orf36,CDS1,COPS4,COQ2,DMP1,DSPP,ENOPH1,FAM175A,FGF5,GK2,HELQ,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MRPS18C,NAA11,NKX6-1,NUDT9,PAQR3,PKD2,PLAC8,PPM1K,PRDM8,PRKG2,PTPN13,RASGEF1B,SCD5,SEC31A,SLC10A6,SPARCL1,SPP1,THAP9,TMEM150C,WDFY3"
TCGA.AZ.4684.01A	4	82348893	85645552	202	-0.5244	SMALL-LOSS	NONFOCAL	20	"AGPAT9,CDS1,COPS4,COQ2,ENOPH1,FAM175A,HELQ,HNRNPD,HNRNPDL,HPSE,LIN54,MRPS18C,NKX6-1,PLAC8,RASGEF1B,SCD5,SEC31A,THAP9,TMEM150C,WDFY3"
TCGA.EI.6509	4	82376620	190921708	30540	-0.7552	SMALL-LOSS	NONFOCAL	358	Too-Many
TCGA.G4.6294	4	83084357	94594397	3043	-0.6877	SMALL-LOSS	NONFOCAL	51	"ABCG2,AFF1,AGPAT9,ARHGAP24,C4orf36,CCSER1,CDS1,COPS4,COQ2,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,GPRIN3,GRID2,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MMRN1,MRPS18C,NAP1L5,NKX6-1,NUDT9,PIGY,PKD2,PLAC8,PPM1K,PTPN13,PYURF,SCD5,SEC31A,SLC10A6,SNCA,SPARCL1,SPP1,THAP9,TIGD2,TMEM150C,WDFY3"
TCGA.CM.6675	4	83143010	94583649	3012	-1.0309	SMALL-LOSS	NONFOCAL	51	"ABCG2,AFF1,AGPAT9,ARHGAP24,C4orf36,CCSER1,CDS1,COPS4,COQ2,DMP1,DSPP,ENOPH1,FAM13A,FAM175A,GPRIN3,GRID2,HELQ,HERC3,HERC5,HERC6,HNRNPD,HNRNPDL,HPSE,HSD17B11,HSD17B13,IBSP,KLHL8,LIN54,MAPK10,MEPE,MMRN1,MRPS18C,NAP1L5,NKX6-1,NUDT9,PIGY,PKD2,PLAC8,PPM1K,PTPN13,PYURF,SCD5,SEC31A,SLC10A6,SNCA,SPARCL1,SPP1,THAP9,TIGD2,TMEM150C,WDFY3"
TCGA.4N.A93T	4	85441409	104193102	4892	-0.7356	SMALL-LOSS	NONFOCAL	73	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AFF1,ARHGAP24,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,C4orf36,CCSER1,CDS1,CENPE,CISD2,DAPP1,DDIT4L,DMP1,DNAJB14,DSPP,EIF4E,EMCN,FAM13A,GPRIN3,GRID2,H2AFZ,HERC3,HERC5,HERC6,HPGDS,HSD17B11,HSD17B13,IBSP,KLHL8,LAMTOR3,MANBA,MAPK10,MEPE,METAP1,MMRN1,MTTP,NAP1L5,NFKB1,NUDT9,PDHA2,PDLIM5,PIGY,PKD2,PPM1K,PPP3CA,PTPN13,PYURF,RAP1GDS1,SLC10A6,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,SPARCL1,SPP1,STPG2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C,WDFY3"
TCGA.AA.3930.01A	4	85729432	100851590	583	-0.6139	SMALL-LOSS	NONFOCAL	58	"ABCG2,ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AFF1,ARHGAP24,ATOH1,BMPR1B,C4orf17,C4orf36,CCSER1,DAPP1,DMP1,DNAJB14,DSPP,EIF4E,FAM13A,GPRIN3,GRID2,HERC3,HERC5,HERC6,HPGDS,HSD17B11,HSD17B13,IBSP,KLHL8,LAMTOR3,MAPK10,MEPE,METAP1,MMRN1,MTTP,NAP1L5,NUDT9,PDHA2,PDLIM5,PIGY,PKD2,PPM1K,PTPN13,PYURF,RAP1GDS1,SLC10A6,SMARCAD1,SNCA,SPARCL1,SPP1,STPG2,TIGD2,TRMT10A,TSPAN5,UNC5C,WDFY3"
TCGA.AG.3612	4	87434721	185017749	26821	-0.8516	SMALL-LOSS	NONFOCAL	309	Too-Many
TCGA.F4.6808	4	88767007	94653693	1442	-0.5778	SMALL-LOSS	NONFOCAL	18	"ABCG2,CCSER1,FAM13A,GPRIN3,GRID2,HERC3,HERC5,HERC6,MEPE,MMRN1,NAP1L5,PIGY,PKD2,PPM1K,PYURF,SNCA,SPP1,TIGD2"
TCGA.AA.A00D.01A	4	89576313	104029919	401	-0.626	SMALL-LOSS	NONFOCAL	48	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,FAM13A,GPRIN3,GRID2,H2AFZ,HERC3,HPGDS,LAMTOR3,MANBA,METAP1,MMRN1,MTTP,NAP1L5,NFKB1,PDHA2,PDLIM5,PPP3CA,RAP1GDS1,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,STPG2,TIGD2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AA.3850	4	90124557	108586101	4672	-0.54175	SMALL-LOSS	NONFOCAL	57	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ARHGEF38,ATOH1,BANK1,BDH2,BMPR1B,C4orf17,CCSER1,CENPE,CISD2,CXXC4,DAPP1,DDIT4L,DKK2,DNAJB14,EIF4E,EMCN,GIMD1,GPRIN3,GRID2,GSTCD,H2AFZ,HPGDS,INTS12,LAMTOR3,MANBA,METAP1,MMRN1,MTTP,NFKB1,NPNT,PAPSS1,PDHA2,PDLIM5,PPA2,PPP3CA,RAP1GDS1,SLC39A8,SLC9B1,SLC9B2,SMARCAD1,SNCA,STPG2,TACR3,TBCK,TET2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.AA.3811	4	90819673	190921708	27962	-0.8745	SMALL-LOSS	NONFOCAL	309	Too-Many
TCGA.AA.3549	4	91371992	190921708	27868	-0.5512	SMALL-LOSS	NONFOCAL	308	Too-Many
TCGA.AA.3952	4	91481235	140462264	12569	-0.5975	SMALL-LOSS	NONFOCAL	141	Too-Many
TCGA.CM.6170	4	92526033	190921708	27564	-0.6156	SMALL-LOSS	NONFOCAL	307	Too-Many
TCGA.AG.4021	4	94687241	143076405	12774	-0.6855	SMALL-LOSS	NONFOCAL	152	Too-Many
TCGA.DM.A28A	4	95496881	140319492	11630	-0.7527	SMALL-LOSS	NONFOCAL	134	Too-Many
TCGA.AA.A00L.01A	4	95585087	103730743	251	-0.6374	SMALL-LOSS	NONFOCAL	31	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,BANK1,BMPR1B,C4orf17,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,H2AFZ,LAMTOR3,MANBA,METAP1,MTTP,NFKB1,PDHA2,PDLIM5,PPP3CA,RAP1GDS1,SLC39A8,STPG2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.G4.6295	4	95975469	104509756	2294	-0.998	SMALL-LOSS	NONFOCAL	35	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,BANK1,BDH2,BMPR1B,C4orf17,CENPE,CISD2,DAPP1,DDIT4L,DNAJB14,EIF4E,EMCN,H2AFZ,LAMTOR3,MANBA,METAP1,MTTP,NFKB1,PDHA2,PPP3CA,RAP1GDS1,SLC39A8,SLC9B1,SLC9B2,STPG2,TRMT10A,TSPAN5,UBE2D3,UNC5C"
TCGA.DM.A1HA	4	96163243	116451441	5406	-0.8791	SMALL-LOSS	NONFOCAL	79	"ADH1A,ADH1B,ADH1C,ADH4,ADH5,ADH6,ADH7,AIMP1,ALPK1,ANK2,AP1AR,ARHGEF38,ARSJ,BANK1,BDH2,C4orf17,C4orf32,CAMK2D,CASP6,CCDC109B,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DAPP1,DDIT4L,DKK2,DNAJB14,EGF,EIF4E,ELOVL6,EMCN,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,H2AFZ,HADH,INTS12,LAMTOR3,LARP7,LEF1,LRIT3,MANBA,METAP1,MTTP,NDST4,NEUROG2,NFKB1,NPNT,OSTC,PAPSS1,PDHA2,PITX2,PLA2G12A,PPA2,PPP3CA,RAP1GDS1,RPL34,RRH,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,STPG2,TACR3,TBCK,TET2,TIFA,TRMT10A,TSPAN5,UBE2D3,UGT8,UNC5C,ZGRF1"
TCGA.DM.A1D9	4	98253308	190921708	26077	-0.7435	SMALL-LOSS	NONFOCAL	299	Too-Many
TCGA.AA.3930.01A	4	101108806	123230380	932	-0.6151	SMALL-LOSS	NONFOCAL	81	"AIMP1,ALPK1,ANK2,ANXA5,AP1AR,ARHGEF38,ARSJ,BANK1,BBS7,BDH2,C4orf3,C4orf32,CAMK2D,CASP6,CCDC109B,CCNA2,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DDIT4L,DKK2,EGF,ELOVL6,EMCN,ENPEP,ETNPPL,EXOSC9,FABP2,GAR1,GIMD1,GSTCD,HADH,INTS12,KIAA1109,LARP7,LEF1,LRIT3,MAD2L1,MANBA,METTL14,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NFKB1,NPNT,OSTC,PAPSS1,PDE5A,PITX2,PLA2G12A,PPA2,PPP3CA,PRDM5,PRSS12,QRFPR,RPL34,RRH,SEC24B,SEC24D,SGMS2,SLC39A8,SLC9B1,SLC9B2,SYNPO2,TACR3,TBCK,TET2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UBE2D3,UGT8,USP53,ZGRF1"
TCGA.EI.6513	4	102209162	190921708	25083	-0.7847	SMALL-LOSS	NONFOCAL	278	Too-Many
TCGA.EI.7002	4	102719649	110797355	1943	-0.7999	SMALL-LOSS	NONFOCAL	39	"AIMP1,ARHGEF38,BANK1,BDH2,CASP6,CCDC109B,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DKK2,ETNPPL,GAR1,GIMD1,GSTCD,HADH,INTS12,LEF1,LRIT3,MANBA,NFKB1,NPNT,OSTC,PAPSS1,PLA2G12A,PPA2,RPL34,RRH,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,UBE2D3"
TCGA.F5.6863	4	103223503	113988195	2677	-0.6258	SMALL-LOSS	NONFOCAL	50	"AIMP1,ALPK1,ANK2,AP1AR,ARHGEF38,BDH2,C4orf32,CASP6,CCDC109B,CENPE,CFI,CISD2,COL25A1,CXXC4,CYP2U1,DKK2,EGF,ELOVL6,ENPEP,ETNPPL,GAR1,GIMD1,GSTCD,HADH,INTS12,LARP7,LEF1,LRIT3,MANBA,NEUROG2,NFKB1,NPNT,OSTC,PAPSS1,PITX2,PLA2G12A,PPA2,RPL34,RRH,SEC24B,SGMS2,SLC39A8,SLC9B1,SLC9B2,TACR3,TBCK,TET2,TIFA,UBE2D3,ZGRF1"
TCGA.4N.A93T	4	104250293	144820715	10647	-0.7567	SMALL-LOSS	NONFOCAL	117	Too-Many
TCGA.AA.A00Q.01A	4	104512602	187476289	2138	-0.5427	SMALL-LOSS	NONFOCAL	262	Too-Many
TCGA.F4.6460	4	105356617	190921708	24360	-0.6271	SMALL-LOSS	NONFOCAL	266	Too-Many
TCGA.AA.A00L.01A	4	106155079	183812500	1898	-0.5485	SMALL-LOSS	NONFOCAL	229	Too-Many
TCGA.AA.A01S	4	110385757	114534722	1228	-0.92355	SMALL-LOSS	NONFOCAL	21	"ALPK1,ANK2,AP1AR,C4orf32,CAMK2D,CASP6,CCDC109B,CFI,EGF,ELOVL6,ENPEP,GAR1,LARP7,LRIT3,NEUROG2,PITX2,PLA2G12A,RRH,SEC24B,TIFA,ZGRF1"
TCGA.G4.6295	4	112075502	135794280	6076	-1.0212	SMALL-LOSS	NONFOCAL	58	"ADAD1,ALPK1,ANK2,ANKRD50,ANXA5,AP1AR,ARSJ,BBS12,BBS7,C4orf29,C4orf3,C4orf32,C4orf33,CAMK2D,CCNA2,EXOSC9,FABP2,FAT4,FGF2,HSPA4L,IL2,IL21,INTU,JADE1,KIAA1109,LARP1B,LARP7,MAD2L1,METTL14,MFSD8,MYOZ2,NDNF,NDST3,NDST4,NEUROG2,NUDT6,PABPC4L,PCDH10,PDE5A,PGRMC2,PLK4,PRDM5,PRSS12,QRFPR,SCLT1,SEC24D,SLC25A31,SPATA5,SPRY1,SYNPO2,TIFA,TMEM155,TNIP3,TRAM1L1,TRPC3,UGT8,USP53,ZGRF1"
TCGA.AZ.4616	4	115188500	121542991	1627	-0.7766	SMALL-LOSS	NONFOCAL	14	"C4orf3,FABP2,MAD2L1,METTL14,MYOZ2,NDST3,NDST4,PDE5A,PRSS12,SEC24D,SYNPO2,TRAM1L1,UGT8,USP53"
TCGA.EI.7002	4	115740907	190921708	21449	-0.8189	SMALL-LOSS	NONFOCAL	223	Too-Many
TCGA.AA.A01S	4	117847877	120531198	727	-0.91975	SMALL-LOSS	NONFOCAL	11	"C4orf3,FABP2,METTL14,MYOZ2,NDST3,PDE5A,PRSS12,SEC24D,SYNPO2,TRAM1L1,USP53"
TCGA.AA.A02F.01A	4	118005432	190947494	2119	-0.7077	SMALL-LOSS	NONFOCAL	223	Too-Many
TCGA.AZ.4616	4	121958090	124478958	634	-0.8206	SMALL-LOSS	NONFOCAL	18	"ADAD1,ANXA5,BBS12,BBS7,CCNA2,EXOSC9,FGF2,IL2,IL21,KIAA1109,NDNF,NUDT6,QRFPR,SPATA5,SPRY1,TMEM155,TNIP3,TRPC3"
TCGA.AG.3742	4	132246707	190921708	17163	-0.6168	SMALL-LOSS	NONFOCAL	178	Too-Many
TCGA.A6.6650	4	134297362	190921708	15208	-0.5204	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AG.A01Y	4	134491905	183745320	14339	-0.7286	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.AA.3930.01A	4	138449605	151142787	402	-0.5706	SMALL-LOSS	NONFOCAL	46	"ABCE1,ANAPC10,ARHGAP10,C4orf51,CCRN4L,CLGN,DCLK2,EDNRA,ELF2,ELMOD2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LSM6,MAML3,MGARP,MGAT4D,MGST2,MMAA,NAA15,NDUFC1,NR3C2,OTUD4,PCDH18,POU4F2,PRMT9,RAB33B,RNF150,SCOC,SETD7,SLC10A7,SLC7A11,SMAD1,SMARCA5,TBC1D9,TMEM184C,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AZ.4684.01A	4	139157441	141264736	62	-0.5606	SMALL-LOSS	NONFOCAL	11	"CCRN4L,ELF2,MAML3,MGARP,MGST2,NAA15,NDUFC1,RAB33B,SCOC,SETD7,SLC7A11"
TCGA.AA.A01S	4	140281940	147960494	2054	-0.93895	SMALL-LOSS	NONFOCAL	34	"ABCE1,ANAPC10,C4orf51,CLGN,ELMOD2,FREM3,GAB1,GYPA,GYPB,GYPE,HHIP,IL15,INPP4B,LSM6,MAML3,MGAT4D,MGST2,MMAA,NAA15,OTUD4,POU4F2,RAB33B,RNF150,SCOC,SETD7,SLC10A7,SMAD1,SMARCA5,TBC1D9,TTC29,UCP1,USP38,ZNF330,ZNF827"
TCGA.AG.4021	4	143243555	190763807	14286	-0.7137	SMALL-LOSS	NONFOCAL	155	Too-Many
TCGA.4N.A93T	4	145045559	190921708	13916	-0.7826	SMALL-LOSS	NONFOCAL	149	Too-Many
TCGA.F4.6808	4	146639207	169011632	6267	-0.6175	SMALL-LOSS	NONFOCAL	74	"ANP32C,APELA,ARFIP1,ARHGAP10,ASIC5,C4orf45,C4orf46,C4orf51,CPE,CTSO,DCHS2,DCLK2,EDNRA,ETFDH,FAM160A1,FAM198B,FAM218A,FBXW7,FGA,FGB,FGG,FHDC1,FNIP2,FSTL5,GATB,GLRB,GRIA2,GUCY1A3,GUCY1B3,KIAA0922,KLHL2,LRAT,LRBA,LSM6,MAB21L2,MAP9,MARCH1,MND1,MSMO1,NAF1,NPY1R,NPY2R,NPY5R,NR3C2,PDGFC,PLRG1,POU4F2,PPID,PRMT9,PRSS48,RAPGEF2,RBM46,RNF175,RPS3A,RXFP1,SFRP2,SH3D19,SLC10A7,SPOCK3,TDO2,TIGD4,TKTL2,TLL1,TLR2,TMA16,TMEM144,TMEM154,TMEM184C,TMEM192,TRIM2,TRIM60,TRIM61,TTC29,ZNF827"
TCGA.AA.A01S	4	150351066	156465633	1657	-0.92495	SMALL-LOSS	NONFOCAL	28	"ARFIP1,DCHS2,DCLK2,FAM160A1,FBXW7,FGA,FGB,FGG,FHDC1,GATB,KIAA0922,LRAT,LRBA,MAB21L2,MAP9,MND1,NPY2R,PLRG1,PRSS48,RBM46,RNF175,RPS3A,SFRP2,SH3D19,TIGD4,TLR2,TMEM154,TRIM2"
TCGA.CM.6675	4	150525562	156449829	1620	-1.0368	SMALL-LOSS	NONFOCAL	28	"ARFIP1,DCHS2,DCLK2,FAM160A1,FBXW7,FGA,FGB,FGG,FHDC1,GATB,KIAA0922,LRAT,LRBA,MAB21L2,MAP9,MND1,NPY2R,PLRG1,PRSS48,RBM46,RNF175,RPS3A,SFRP2,SH3D19,TIGD4,TLR2,TMEM154,TRIM2"
TCGA.AA.3930.01A	4	151186842	156726218	327	-0.5942	SMALL-LOSS	NONFOCAL	29	"ARFIP1,DCHS2,FAM160A1,FBXW7,FGA,FGB,FGG,FHDC1,GATB,GUCY1A3,GUCY1B3,KIAA0922,LRAT,LRBA,MAB21L2,MAP9,MND1,NPY2R,PLRG1,PRSS48,RBM46,RNF175,RPS3A,SFRP2,SH3D19,TIGD4,TLR2,TMEM154,TRIM2"
TCGA.AA.3860	4	151693148	190921708	12311	-0.6598	SMALL-LOSS	NONFOCAL	129	Too-Many
TCGA.AZ.4616	4	152066409	154306552	596	-0.8257	SMALL-LOSS	NONFOCAL	11	"ARFIP1,FAM160A1,FBXW7,FHDC1,GATB,MND1,PRSS48,SH3D19,TIGD4,TMEM154,TRIM2"
TCGA.AA.3664	4	152671639	190921708	12161	-0.8234	SMALL-LOSS	NONFOCAL	124	Too-Many
TCGA.AA.3956	4	153248142	190921708	11923	-0.5487	SMALL-LOSS	NONFOCAL	123	Too-Many
TCGA.G4.6295	4	153385468	156911990	1184	-1.0109	SMALL-LOSS	NONFOCAL	25	"ARFIP1,ASIC5,CTSO,DCHS2,FBXW7,FGA,FGB,FGG,FHDC1,GUCY1A3,GUCY1B3,KIAA0922,LRAT,MAP9,MND1,NPY2R,PLRG1,RBM46,RNF175,SFRP2,TDO2,TIGD4,TLR2,TMEM154,TRIM2"
TCGA.AU.3779	4	154058147	190921708	11733	-0.8046	SMALL-LOSS	NONFOCAL	118	Too-Many
TCGA.AG.A020	4	154426578	156519198	761	-0.8342	SMALL-LOSS	NONFOCAL	13	"DCHS2,FGA,FGB,FGG,KIAA0922,LRAT,MAP9,NPY2R,PLRG1,RBM46,RNF175,SFRP2,TLR2"
TCGA.AA.3514	4	155849429	166120643	3019	-0.7813	SMALL-LOSS	NONFOCAL	32	"ANP32C,APELA,ASIC5,C4orf45,C4orf46,CTSO,ETFDH,FAM198B,FAM218A,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,MAP9,MARCH1,NAF1,NPY1R,NPY2R,NPY5R,PDGFC,PPID,RAPGEF2,RXFP1,TDO2,TKTL2,TMA16,TMEM144,TMEM192,TRIM60,TRIM61"
TCGA.AZ.4616	4	156007878	159685742	1047	-0.7993	SMALL-LOSS	NONFOCAL	16	"ASIC5,C4orf46,CTSO,ETFDH,FAM198B,GLRB,GRIA2,GUCY1A3,GUCY1B3,MAP9,NPY2R,PDGFC,PPID,RXFP1,TDO2,TMEM144"
TCGA.AA.3679	4	156173214	162611901	1851	-0.7104	SMALL-LOSS	NONFOCAL	19	"ASIC5,C4orf45,C4orf46,CTSO,ETFDH,FAM198B,FNIP2,FSTL5,GLRB,GRIA2,GUCY1A3,GUCY1B3,MAP9,PDGFC,PPID,RAPGEF2,RXFP1,TDO2,TMEM144"
TCGA.AG.A020	4	157469351	167027706	2748	-0.7998	SMALL-LOSS	NONFOCAL	29	"ANP32C,APELA,C4orf45,C4orf46,CPE,ETFDH,FAM198B,FAM218A,FNIP2,FSTL5,GLRB,GRIA2,KLHL2,MARCH1,MSMO1,NAF1,NPY1R,NPY5R,PDGFC,PPID,RAPGEF2,RXFP1,TKTL2,TLL1,TMA16,TMEM144,TMEM192,TRIM60,TRIM61"
TCGA.G4.6295	4	157831538	190921708	10435	-1.0571	SMALL-LOSS	NONFOCAL	98	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf46,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,ETFDH,F11,FAM149A,FAM198B,FAM218A,FAT1,FBXO8,FNIP2,FRG1,FSTL5,GALNT7,GALNTL6,GLRA3,GLRB,GPM6A,GRIA2,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDGFC,PDLIM3,PPID,PRIMPOL,RAPGEF2,RWDD4,RXFP1,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM144,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.A01S	4	158202541	163879821	1566	-0.94795	SMALL-LOSS	NONFOCAL	11	"C4orf45,C4orf46,ETFDH,FAM198B,FNIP2,FSTL5,GRIA2,PPID,RAPGEF2,RXFP1,TMEM144"
TCGA.AA.3930.01A	4	159547927	190947494	895	-0.5796	SMALL-LOSS	NONFOCAL	94	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf45,C4orf46,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,ETFDH,F11,FAM149A,FAM218A,FAT1,FBXO8,FNIP2,FRG1,FRG2,FSTL5,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDLIM3,PPID,PRIMPOL,RAPGEF2,RWDD4,RXFP1,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.A01S	4	164464855	171065246	1983	-0.94615	SMALL-LOSS	NONFOCAL	23	"AADAT,ANP32C,ANXA10,APELA,C4orf27,CBR4,CLCN3,CPE,DDX60,DDX60L,FAM218A,KLHL2,MARCH1,MFAP3L,MSMO1,NEK1,PALLD,SH3RF1,SPOCK3,TLL1,TMEM192,TRIM60,TRIM61"
TCGA.AA.3872	4	164679593	188032206	7730	-0.7651	SMALL-LOSS	NONFOCAL	76	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANP32C,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TLL1,TLR3,TMEM192,TRAPPC11,TRIM60,TRIM61,UFSP2,VEGFC,WDR17,WWC2"
TCGA.G4.6310	4	165435916	190921708	8330	-0.7192	SMALL-LOSS	NONFOCAL	78	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,APELA,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAM218A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLHL2,KLKB1,LRP2BP,MFAP3L,MSMO1,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TLL1,TLR3,TMEM192,TRAPPC11,TRIM60,TRIM61,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.CM.6163	4	168236766	190921708	7496	-0.7679	SMALL-LOSS	NONFOCAL	68	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MFAP3L,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.A02H.01A	4	169312644	177071582	210	-0.7805	SMALL-LOSS	NONFOCAL	22	"AADAT,ADAM29,C4orf27,CBR4,CEP44,CLCN3,DDX60L,FBXO8,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HMGB2,HPGD,MFAP3L,NEK1,PALLD,SAP30,SCRG1,SH3RF1,WDR17"
TCGA.A6.6140	4	169530257	190921708	7131	-0.7772	SMALL-LOSS	NONFOCAL	65	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf27,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLCN3,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MFAP3L,MTNR1A,NEIL3,NEK1,PALLD,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AG.3611.01A	4	170912560	190884165	438	-0.6338	SMALL-LOSS	NONFOCAL	59	"AADAT,ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GALNT7,GALNTL6,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KLKB1,LRP2BP,MFAP3L,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SAP30,SCRG1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.3544	4	174119048	186232080	4329	-0.8246	SMALL-LOSS	NONFOCAL	38	"ACSL1,ADAM29,AGA,ASB5,CASP3,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,DCTD,ENPP6,FBXO8,GALNT7,GLRA3,GPM6A,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,NEIL3,PRIMPOL,RWDD4,SAP30,SCRG1,SLC25A4,SNX25,SPATA4,SPCS3,STOX2,TENM3,TRAPPC11,VEGFC,WDR17,WWC2"
TCGA.AA.3660	4	174678332	190921708	5703	-0.7293	SMALL-LOSS	NONFOCAL	51	"ACSL1,ADAM29,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CEP44,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FBXO8,FRG1,GLRA3,GPM6A,HELT,HPGD,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AA.A02H.01A	4	177072941	190873266	386	-1.0445	SMALL-LOSS	NONFOCAL	45	"ACSL1,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WDR17,WWC2,ZFP42"
TCGA.AF.2687	4	177115027	190921708	5029	-0.6522	SMALL-LOSS	NONFOCAL	44	"ACSL1,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WWC2,ZFP42"
TCGA.AZ.4614	4	177144363	190921708	4965	-0.6051	SMALL-LOSS	NONFOCAL	43	"ACSL1,AGA,ANKRD37,ASB5,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,SPCS3,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,VEGFC,WWC2,ZFP42"
TCGA.AA.3989	4	177801789	184831714	2698	-0.7276	SMALL-LOSS	NONFOCAL	12	"AGA,CDKN2AIP,CLDN22,CLDN24,DCTD,ING2,NEIL3,RWDD4,STOX2,TENM3,TRAPPC11,WWC2"
TCGA.F4.6808	4	178152132	190921708	4655	-0.6627	SMALL-LOSS	NONFOCAL	40	"ACSL1,AGA,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,NEIL3,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.G4.6626	4	179812896	190921708	4104	-0.9571	SMALL-LOSS	NONFOCAL	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AA.A01R	4	180420133	190921708	3864	-0.5857	SMALL-LOSS	NONFOCAL	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.CA.5254	4	180624050	190921708	3785	-1.2296	SMALL-LOSS	NONFOCAL	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.A6.3807	4	181160544	190318079	3471	-0.9063	SMALL-LOSS	NONFOCAL	37	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.DM.A1HA	4	182156585	190921708	3180	-0.9664	SMALL-LOSS	NONFOCAL	38	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AZ.4308	4	182729134	189362291	2402	-0.6429	SMALL-LOSS	NONFOCAL	37	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AA.3980.01A	4	183245182	185074656	106	-1.0105	SMALL-LOSS	NONFOCAL	11	"CDKN2AIP,CLDN22,CLDN24,DCTD,ENPP6,ING2,RWDD4,STOX2,TENM3,TRAPPC11,WWC2"
TCGA.AZ.4684.01A	4	183664276	186370702	205	-0.5902	SMALL-LOSS	NONFOCAL	25	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,DCTD,ENPP6,HELT,ING2,IRF2,LRP2BP,PRIMPOL,RWDD4,SLC25A4,SNX25,STOX2,TENM3,TRAPPC11,UFSP2,WWC2"
TCGA.AA.A02E.01A	4	183664276	190947494	326	-0.5172	SMALL-LOSS	NONFOCAL	39	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,FRG2,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AA.3509.01A	4	183672913	185553375	100	-0.789	SMALL-LOSS	NONFOCAL	13	"CASP3,CDKN2AIP,CLDN22,CLDN24,DCTD,ENPP6,ING2,IRF2,RWDD4,STOX2,TENM3,TRAPPC11,WWC2"
TCGA.AA.A01K.01A	4	183674554	190947494	324	-0.5515	SMALL-LOSS	NONFOCAL	39	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,FRG1,FRG2,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TENM3,TLR3,TRAPPC11,TRIML1,TRIML2,UFSP2,WWC2,ZFP42"
TCGA.AG.A01Y	4	183761426	187574900	1369	-0.8216	SMALL-LOSS	NONFOCAL	33	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,DCTD,ENPP6,F11,FAM149A,FAT1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TLR3,TRAPPC11,UFSP2,WWC2"
TCGA.AA.A01S	4	184113812	188856429	1679	-0.94975	SMALL-LOSS	NONFOCAL	32	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CDKN2AIP,CENPU,CFAP97,CLDN22,CLDN24,CYP4V2,ENPP6,F11,FAM149A,FAT1,HELT,ING2,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,SORBS2,STOX2,TLR3,TRAPPC11,UFSP2,WWC2"
TCGA.CM.4750.01A	4	184426357	186456446	179	-0.5651	SMALL-LOSS	NONFOCAL	20	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,ENPP6,HELT,ING2,IRF2,LRP2BP,PDLIM3,PRIMPOL,RWDD4,SLC25A4,SNX25,STOX2,TRAPPC11,UFSP2"
TCGA.AG.3612	4	185359415	190921708	1784	-0.8711	SMALL-LOSS	NONFOCAL	27	"ACSL1,ANKRD37,C4orf47,CASP3,CCDC110,CENPU,CFAP97,CYP4V2,F11,FAM149A,FAT1,FRG1,HELT,IRF2,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.3980.01A	4	185593359	189064903	234	-0.6007	SMALL-LOSS	NONFOCAL	24	"ACSL1,ANKRD37,C4orf47,CCDC110,CENPU,CFAP97,CYP4V2,F11,FAM149A,FAT1,HELT,KLKB1,LRP2BP,MTNR1A,PDLIM3,PRIMPOL,SLC25A4,SNX25,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.3509.01A	4	185612633	186370702	93	-0.7839	SMALL-LOSS	NONFOCAL	12	"ACSL1,ANKRD37,C4orf47,CCDC110,CENPU,CFAP97,HELT,LRP2BP,PRIMPOL,SLC25A4,SNX25,UFSP2"
TCGA.DM.A28A	4	185908084	186882662	342	-0.722	SMALL-LOSS	NONFOCAL	11	"ANKRD37,C4orf47,CCDC110,CFAP97,HELT,LRP2BP,PDLIM3,SLC25A4,SNX25,SORBS2,UFSP2"
TCGA.AG.A00H.01A	4	186324600	190947494	145	-0.5227	SMALL-LOSS	NONFOCAL	17	"C4orf47,CCDC110,CYP4V2,F11,FAM149A,FAT1,FRG1,FRG2,KLKB1,MTNR1A,PDLIM3,SORBS2,TLR3,TRIML1,TRIML2,UFSP2,ZFP42"
TCGA.AA.3509.01A	4	186382152	190947494	151	-0.783	SMALL-LOSS	NONFOCAL	15	"CCDC110,CYP4V2,F11,FAM149A,FAT1,FRG1,FRG2,KLKB1,MTNR1A,PDLIM3,SORBS2,TLR3,TRIML1,TRIML2,ZFP42"
TCGA.AZ.4684.01A	4	186382152	190947494	151	-0.5184	SMALL-LOSS	NONFOCAL	15	"CCDC110,CYP4V2,F11,FAM149A,FAT1,FRG1,FRG2,KLKB1,MTNR1A,PDLIM3,SORBS2,TLR3,TRIML1,TRIML2,ZFP42"
TCGA.AA.3854	5	51454	2341948	633	-0.8607	SMALL-LOSS	NONFOCAL	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.A6.5661	5	51454	2461997	698	-1.1772	SMALL-LOSS	NONFOCAL	24	"AHRR,BRD9,CCDC127,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.QG.A5YV	5	51454	3269657	1266	-0.5209	SMALL-LOSS	NONFOCAL	26	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.A6.5665	5	51454	3642850	1470	-0.6944	SMALL-LOSS	NONFOCAL	27	"AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MRPL36,NDUFS6,NKD2,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.CM.4746	5	51454	10525615	4955	-0.843	SMALL-LOSS	NONFOCAL	45	"ADAMTS16,ADCY2,AHRR,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AG.3592	5	51454	14339526	6412	-0.5514	SMALL-LOSS	NONFOCAL	50	"ADAMTS16,ADCY2,AHRR,ANKRD33B,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM173B,FASTKD3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH6,MED10,MRPL36,MTRR,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11"
TCGA.AA.3966	5	51454	26910901	9741	-0.5886	SMALL-LOSS	NONFOCAL	64	"ADAMTS16,ADCY2,AHRR,ANKH,ANKRD33B,BASP1,BRD9,C5orf38,C5orf49,CCDC127,CCT5,CDH10,CDH12,CDH18,CDH9,CEP72,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,EXOC3,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,OTULIN,PAPD7,PDCD6,PLEKHG4B,PRDM9,ROPN1L,SDHA,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TAS2R1,TERT,TPPP,TRIO,TRIP13,UBE2QL1,ZDHHC11,ZNF622"
TCGA.A6.2678	5	51454	42384739	14750	-0.6904	SMALL-LOSS	NONFOCAL	121	Too-Many
TCGA.CM.6172	5	51454	46328444	15298	-0.5243	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.AG.4021	5	51454	180692832	55416	-0.652	SMALL-LOSS	NONFOCAL	849	Too-Many
TCGA.AA.A00N.01A	5	140393	884016	111	-0.7911	SMALL-LOSS	NONFOCAL	12	"AHRR,BRD9,CCDC127,CEP72,EXOC3,LRRC14B,PDCD6,PLEKHG4B,SDHA,SLC9A3,TPPP,ZDHHC11"
TCGA.AG.A023.01A	5	143111	6754814	231	-0.5256	SMALL-LOSS	NONFOCAL	34	"ADAMTS16,AHRR,BRD9,C5orf38,CCDC127,CEP72,CLPTM1L,EXOC3,ICE1,IRX1,IRX2,IRX4,LPCAT1,LRRC14B,MED10,MRPL36,NDUFS6,NKD2,NSUN2,PAPD7,PDCD6,PLEKHG4B,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,SRD5A1,TERT,TPPP,TRIP13,UBE2QL1,ZDHHC11"
TCGA.CK.5914.01A	5	254457	1878076	215	-0.8307	SMALL-LOSS	NONFOCAL	21	"AHRR,BRD9,CEP72,CLPTM1L,EXOC3,IRX4,LPCAT1,MRPL36,NDUFS6,NKD2,PDCD6,SDHA,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.A6.3808.01A	5	343944	3600681	226	-1.1008	SMALL-LOSS	NONFOCAL	22	"AHRR,BRD9,C5orf38,CEP72,CLPTM1L,EXOC3,IRX1,IRX2,IRX4,LPCAT1,MRPL36,NDUFS6,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.A010.01A	5	491837	1321706	128	-0.6506	SMALL-LOSS	NONFOCAL	12	"BRD9,CEP72,CLPTM1L,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC9A3,TERT,TPPP,TRIP13,ZDHHC11"
TCGA.AA.A00N.01A	5	917074	5146226	138	-0.7343	SMALL-LOSS	NONFOCAL	16	"ADAMTS16,C5orf38,CLPTM1L,IRX1,IRX2,IRX4,LPCAT1,MRPL36,NDUFS6,NKD2,SLC12A7,SLC6A18,SLC6A19,SLC6A3,TERT,TRIP13"
TCGA.AG.3611.01A	5	1474628	6738729	61	-0.5199	SMALL-LOSS	NONFOCAL	14	"ADAMTS16,C5orf38,ICE1,IRX1,IRX2,IRX4,LPCAT1,MED10,MRPL36,NDUFS6,NSUN2,PAPD7,SRD5A1,UBE2QL1"
TCGA.AA.3854	5	2353800	33432236	11154	-0.8849	SMALL-LOSS	NONFOCAL	49	"ADAMTS16,ADCY2,ANKH,ANKRD33B,BASP1,C5orf22,C5orf38,C5orf49,CCT5,CDH10,CDH12,CDH18,CDH6,CDH9,CMBL,CTNND2,DAP,DNAH5,DROSHA,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,GOLPH3,ICE1,IRX1,IRX2,MARCH11,MARCH6,MED10,MTMR12,MTRR,MYO10,NPR3,NSUN2,OTULIN,PAPD7,PDZD2,PRDM9,ROPN1L,SEMA5A,SRD5A1,SUB1,TAS2R1,TRIO,UBE2QL1,ZFR,ZNF622"
TCGA.AA.A00Q.01A	5	6374389	22078524	359	-0.5864	SMALL-LOSS	NONFOCAL	32	"ADCY2,ANKH,ANKRD33B,BASP1,C5orf49,CCT5,CDH12,CDH18,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM134B,FAM173B,FASTKD3,FBXL7,MARCH11,MARCH6,MED10,MTRR,MYO10,NSUN2,OTULIN,PAPD7,ROPN1L,SEMA5A,SRD5A1,TAS2R1,TRIO,UBE2QL1,ZNF622"
TCGA.AG.3611.01A	5	7396382	14492628	262	-0.5403	SMALL-LOSS	NONFOCAL	16	"ADCY2,ANKRD33B,C5orf49,CCT5,CMBL,CTNND2,DAP,DNAH5,FAM173B,FASTKD3,MARCH6,MTRR,ROPN1L,SEMA5A,TAS2R1,TRIO"
TCGA.AA.3517	5	9519594	16467412	2567	-0.8457	SMALL-LOSS	NONFOCAL	18	"ANKH,ANKRD33B,CCT5,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM173B,FBXL7,MARCH11,MARCH6,OTULIN,ROPN1L,SEMA5A,TAS2R1,TRIO,ZNF622"
TCGA.AA.A02H.01A	5	14502629	33455009	264	-0.7325	SMALL-LOSS	NONFOCAL	25	"ANKH,BASP1,C5orf22,CDH10,CDH12,CDH18,CDH6,CDH9,DROSHA,FAM105A,FAM134B,FBXL7,GOLPH3,MARCH11,MTMR12,MYO10,NPR3,OTULIN,PDZD2,PRDM9,SUB1,TARS,TRIO,ZFR,ZNF622"
TCGA.AA.A00Q.01A	5	24487731	34914752	195	-0.5542	SMALL-LOSS	NONFOCAL	20	"ADAMTS12,AMACR,C1QTNF3,C5orf22,CDH10,CDH6,CDH9,DROSHA,GOLPH3,MTMR12,NPR3,PDZD2,RAD1,RAI14,RXFP3,SLC45A2,SUB1,TARS,TTC23L,ZFR"
TCGA.5M.AAT5	5	25797299	44551244	5729	-0.7568	SMALL-LOSS	NONFOCAL	71	"ADAMTS12,AGXT2,AMACR,ANXA2R,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH6,CDH9,DAB2,DNAJC21,DROSHA,EGFLAM,FBXO4,FGF10,FYB,GDNF,GDNF-AS1,GHR,GOLPH3,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,MTMR12,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PDZD2,PLCXD3,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131"
TCGA.AA.3811	5	34370530	130356642	26526	-0.5591	SMALL-LOSS	NONFOCAL	332	Too-Many
TCGA.AA.A00Q.01A	5	34954631	37309184	209	-0.582	SMALL-LOSS	NONFOCAL	16	"AGXT2,C5orf42,CAPSL,DNAJC21,IL7R,LMBRD2,NADK2,NIPBL,NUP155,PRLR,RANBP3L,SKP2,SLC1A3,SPEF2,UGT3A1,UGT3A2"
TCGA.AA.A00L.01A	5	37437963	40746878	144	-0.5228	SMALL-LOSS	NONFOCAL	12	"C9,DAB2,EGFLAM,FYB,GDNF,GDNF-AS1,LIFR,OSMR,PTGER4,RICTOR,TTC33,WDR70"
TCGA.AA.A00Q.01A	5	37437963	40746878	142	-0.5434	SMALL-LOSS	NONFOCAL	12	"C9,DAB2,EGFLAM,FYB,GDNF,GDNF-AS1,LIFR,OSMR,PTGER4,RICTOR,TTC33,WDR70"
TCGA.AA.A00D.01A	5	37697720	40716200	137	-0.57	SMALL-LOSS	NONFOCAL	12	"C9,DAB2,EGFLAM,FYB,GDNF,GDNF-AS1,LIFR,OSMR,PTGER4,RICTOR,TTC33,WDR70"
TCGA.F4.6808	5	38780777	68099138	7504	-0.6056	SMALL-LOSS	NONFOCAL	98	"ACTBL2,ADAMTS6,ANKRD55,ANXA2R,ARL15,C5orf28,C5orf34,C5orf51,C5orf64,C5orf67,C6,C7,C9,CARD6,CCDC152,CCL28,CCNO,CD180,CDC20B,CENPK,CWC27,DAB2,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,EMB,ERBB2IP,ERCC8,ESM1,FAM159B,FBXO4,FGF10,FST,FYB,GAPT,GHR,GPBP1,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MAST4,MCIDAS,MIER3,MOCS2,MROH2B,MRPS30,NDUFAF2,NDUFS4,NIM1K,NLN,NNT,OSMR,OXCT1,PAIP1,PARP8,PDE4D,PELO,PIK3R1,PLCXD3,PLK2,PPAP2A,PPWD1,PRKAA1,PTGER4,RAB3C,RGS7BP,RICTOR,RNF180,RPL37,SEPP1,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,TTC33,ZNF131,ZSWIM6"
TCGA.AA.A00L.01A	5	41142878	54581507	296	-0.6053	SMALL-LOSS	NONFOCAL	40	"ANXA2R,ARL15,C5orf28,C5orf34,C5orf51,C6,CCDC152,CCL28,CCNO,CDC20B,DHX29,EMB,ESM1,FBXO4,FGF10,FST,GHR,GPX8,GZMA,GZMK,HCN1,HMGCS1,HSPB3,ISL1,ITGA1,ITGA2,MCIDAS,MOCS2,MRPS30,NDUFS4,NIM1K,NNT,OXCT1,PAIP1,PARP8,PELO,PLCXD3,SEPP1,SNX18,ZNF131"
TCGA.AA.A00Q.01A	5	41142878	112090540	1944	-0.5449	SMALL-LOSS	NONFOCAL	238	Too-Many
TCGA.CL.5918	5	49560858	54597795	1551	-0.6326	SMALL-LOSS	NONFOCAL	20	"ARL15,CCNO,CDC20B,DHX29,EMB,ESM1,FST,GPX8,GZMA,GZMK,HSPB3,ISL1,ITGA1,ITGA2,MCIDAS,MOCS2,NDUFS4,PARP8,PELO,SNX18"
TCGA.QG.A5Z1	5	49560858	177390270	38879	-0.8138	SMALL-LOSS	NONFOCAL	667	Too-Many
TCGA.AG.3732	5	49560858	180692832	40081	-0.5591	SMALL-LOSS	NONFOCAL	713	Too-Many
TCGA.AA.3502	5	49564627	67615527	5684	-0.8047	SMALL-LOSS	NONFOCAL	66	"ACTBL2,ADAMTS6,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CD180,CDC20B,CENPK,CWC27,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,EMB,ERBB2IP,ERCC8,ESM1,FAM159B,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,HTR1A,IL31RA,IL6ST,IPO11,ISL1,ITGA1,ITGA2,KIF2A,LRRC70,MAP3K1,MAST4,MCIDAS,MIER3,MOCS2,NDUFAF2,NDUFS4,NLN,PARP8,PDE4D,PELO,PIK3R1,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SNX18,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AA.3858	5	49573124	180692832	40210	-0.5375	SMALL-LOSS	NONFOCAL	713	Too-Many
TCGA.AA.3952	5	49595769	84166461	10242	-0.591	SMALL-LOSS	NONFOCAL	160	Too-Many
TCGA.CK.5912	5	50254865	180692832	39935	-0.7921	SMALL-LOSS	NONFOCAL	711	Too-Many
TCGA.DM.A1HA	5	50272440	93297875	12038	-0.9063	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.AZ.4684.01A	5	52374550	61789788	386	-0.7408	SMALL-LOSS	NONFOCAL	42	"ACTBL2,ANKRD55,ARL15,C5orf64,C5orf67,CCNO,CDC20B,DDX4,DEPDC1B,DHX29,DIMT1,ELOVL7,ERCC8,ESM1,FST,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,IPO11,ITGA2,KIF2A,MAP3K1,MCIDAS,MIER3,MOCS2,NDUFAF2,NDUFS4,PDE4D,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SMIM15,SNX18,ZSWIM6"
TCGA.AZ.4614	5	53062987	59208797	2218	-0.7889	SMALL-LOSS	NONFOCAL	28	"ACTBL2,ANKRD55,ARL15,C5orf67,CCNO,CDC20B,DDX4,DHX29,ESM1,GAPT,GPBP1,GPX8,GZMA,GZMK,HSPB3,IL31RA,IL6ST,MAP3K1,MCIDAS,MIER3,PDE4D,PLK2,PPAP2A,RAB3C,SETD9,SKIV2L2,SLC38A9,SNX18"
TCGA.AA.3860	5	53317989	101880287	13353	-0.6481	SMALL-LOSS	NONFOCAL	190	Too-Many
TCGA.AA.3867	5	53512366	180692832	39063	-0.5622	SMALL-LOSS	NONFOCAL	704	Too-Many
TCGA.DY.A1DD	5	53536997	180692832	39069	-0.729	SMALL-LOSS	NONFOCAL	704	Too-Many
TCGA.EI.7002	5	54652576	66663690	3766	-1.1962	SMALL-LOSS	NONFOCAL	45	"ACTBL2,ADAMTS6,ANKRD55,C5orf64,C5orf67,CD180,CENPK,CWC27,DDX4,DEPDC1B,DIMT1,ELOVL7,ERBB2IP,ERCC8,FAM159B,GAPT,GPBP1,HTR1A,IL31RA,IL6ST,IPO11,KIF2A,LRRC70,MAP3K1,MAST4,MIER3,NDUFAF2,NLN,PDE4D,PLK2,PPAP2A,PPWD1,RAB3C,RGS7BP,RNF180,SETD9,SGTB,SKIV2L2,SLC38A9,SMIM15,SREK1,SREK1IP1,TRAPPC13,TRIM23,ZSWIM6"
TCGA.AY.A71X	5	54769419	62775262	2556	-0.7557	SMALL-LOSS	NONFOCAL	27	"ACTBL2,ANKRD55,C5orf64,C5orf67,DDX4,DEPDC1B,DIMT1,ELOVL7,ERCC8,GAPT,GPBP1,IL31RA,IL6ST,IPO11,KIF2A,LRRC70,MAP3K1,MIER3,NDUFAF2,PDE4D,PLK2,PPAP2A,RAB3C,SETD9,SLC38A9,SMIM15,ZSWIM6"
TCGA.AA.A02H.01A	5	54931323	57754535	122	-0.6749	SMALL-LOSS	NONFOCAL	12	"ACTBL2,ANKRD55,C5orf67,DDX4,GPBP1,IL31RA,IL6ST,MAP3K1,MIER3,PLK2,SETD9,SLC38A9"
TCGA.AG.A01Y	5	55880459	172774625	35745	-0.7703	SMALL-LOSS	NONFOCAL	592	Too-Many
TCGA.CL.5918	5	58612015	61923025	897	-0.6508	SMALL-LOSS	NONFOCAL	12	"C5orf64,DEPDC1B,DIMT1,ELOVL7,ERCC8,IPO11,KIF2A,LRRC70,NDUFAF2,PDE4D,SMIM15,ZSWIM6"
TCGA.A6.4105	5	58815362	93214974	9104	-0.642	SMALL-LOSS	NONFOCAL	138	Too-Many
TCGA.DM.A1DB	5	59017441	175329032	35828	-0.7224	SMALL-LOSS	NONFOCAL	592	Too-Many
TCGA.AZ.4614	5	59414135	76721088	4836	-0.8002	SMALL-LOSS	NONFOCAL	87	"ADAMTS6,AGGF1,AK6,ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,C5orf64,CARTPT,CCDC125,CCNB1,CD180,CDK7,CENPH,CENPK,COL4A3BP,CRHBP,CWC27,DEPDC1B,DIMT1,ELOVL7,ENC1,ERBB2IP,ERCC8,F2R,F2RL1,F2RL2,FAM159B,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,GTF2H2C,GTF2H2C_2,HEXB,HMGCR,HTR1A,IPO11,IQGAP2,KIF2A,LRRC70,MAP1B,MARVELD2,MAST4,MCCC2,MRPS27,MRPS36,NAIP,NDUFAF2,NLN,NSA2,OCLN,PDE4D,PDE8B,PIK3R1,POC5,POLK,PPWD1,PTCD2,RAD17,RGS7BP,RNF180,S100Z,SERF1A,SERF1B,SGTB,SLC30A5,SMIM15,SMN1,SMN2,SREK1,SREK1IP1,SV2C,TAF9,TMEM171,TMEM174,TNPO1,TRAPPC13,TRIM23,UTP15,ZBED3,ZNF366,ZSWIM6"
TCGA.CM.6675	5	61978988	100873497	10193	-1.0294	SMALL-LOSS	NONFOCAL	149	Too-Many
TCGA.AY.A71X	5	62826625	68788260	1853	-0.7455	SMALL-LOSS	NONFOCAL	29	"ADAMTS6,AK6,CCDC125,CCNB1,CD180,CDK7,CENPH,CENPK,CWC27,ERBB2IP,FAM159B,HTR1A,MARVELD2,MAST4,MRPS36,NLN,OCLN,PIK3R1,PPWD1,RAD17,RGS7BP,RNF180,SGTB,SLC30A5,SREK1,SREK1IP1,TAF9,TRAPPC13,TRIM23"
TCGA.DM.A28A	5	64556639	148815758	24369	-0.7381	SMALL-LOSS	NONFOCAL	442	Too-Many
TCGA.EI.6513	5	64582051	136824660	20902	-0.7791	SMALL-LOSS	NONFOCAL	283	Too-Many
TCGA.DM.A288	5	64715660	98476807	8902	-0.5322	SMALL-LOSS	NONFOCAL	141	Too-Many
TCGA.CL.5918	5	64729074	70680531	1393	-0.6341	SMALL-LOSS	NONFOCAL	31	"ADAMTS6,AK6,CCDC125,CCNB1,CD180,CDK7,CENPH,CENPK,ERBB2IP,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MAST4,MRPS36,NAIP,NLN,OCLN,PIK3R1,PPWD1,RAD17,SERF1A,SERF1B,SGTB,SLC30A5,SMN1,SMN2,SREK1,TAF9,TRAPPC13,TRIM23"
TCGA.AG.3726	5	65051803	71031234	1409	-0.6787	SMALL-LOSS	NONFOCAL	28	"AK6,BDP1,CARTPT,CCDC125,CCNB1,CD180,CDK7,CENPH,ERBB2IP,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MAST4,MCCC2,MRPS36,NAIP,NLN,OCLN,PIK3R1,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,SREK1,TAF9"
TCGA.F5.6863	5	65640225	72085086	1541	-0.6389	SMALL-LOSS	NONFOCAL	29	"AK6,BDP1,CARTPT,CCDC125,CCNB1,CD180,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MAP1B,MARVELD2,MAST4,MCCC2,MRPS27,MRPS36,NAIP,OCLN,PIK3R1,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9,ZNF366"
TCGA.AA.3496	5	66074456	99314748	8616	-0.704	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.CK.5914.01A	5	66449279	69718636	135	-0.5149	SMALL-LOSS	NONFOCAL	20	"AK6,CCDC125,CCNB1,CD180,CDK7,CENPH,GTF2H2C,GTF2H2C_2,MARVELD2,MAST4,MRPS36,OCLN,PIK3R1,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.F5.6465	5	67208470	71744663	815	-0.5296	SMALL-LOSS	NONFOCAL	27	"AK6,BDP1,CARTPT,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,OCLN,PIK3R1,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9,ZNF366"
TCGA.AA.A02E.01A	5	67576339	71648446	231	-0.6252	SMALL-LOSS	NONFOCAL	26	"AK6,BDP1,CARTPT,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MAP1B,MARVELD2,MCCC2,MRPS27,MRPS36,NAIP,OCLN,PIK3R1,PTCD2,RAD17,SERF1A,SERF1B,SLC30A5,SMN1,SMN2,TAF9"
TCGA.AG.A01W.01A	5	68432352	70392786	120	-0.6728	SMALL-LOSS	NONFOCAL	18	"AK6,CCDC125,CCNB1,CDK7,CENPH,GTF2H2,GTF2H2C,GTF2H2C_2,MARVELD2,MRPS36,NAIP,OCLN,RAD17,SERF1A,SERF1B,SMN1,SMN2,TAF9"
TCGA.AZ.4684.01A	5	69730703	76649130	412	-0.8545	SMALL-LOSS	NONFOCAL	44	"AGGF1,ANKDD1B,ANKRA2,ANKRD31,ARHGEF28,BDP1,BTF3,CARTPT,COL4A3BP,CRHBP,ENC1,F2R,F2RL1,F2RL2,FAM169A,FCHO2,FOXD1,GCNT4,GFM2,GTF2H2,HEXB,HMGCR,IQGAP2,MAP1B,MCCC2,MRPS27,NAIP,NSA2,PDE8B,POC5,POLK,PTCD2,S100Z,SERF1A,SERF1B,SMN1,SMN2,SV2C,TMEM171,TMEM174,TNPO1,UTP15,ZBED3,ZNF366"
TCGA.AG.3906.01A	5	74886129	76326555	76	-0.5364	SMALL-LOSS	NONFOCAL	11	"AGGF1,ANKDD1B,CRHBP,F2R,F2RL1,F2RL2,IQGAP2,POC5,POLK,S100Z,SV2C"
TCGA.CL.5918	5	74895473	87123756	3540	-0.6584	SMALL-LOSS	NONFOCAL	53	"ACOT12,AGGF1,ANKDD1B,ANKRD34B,AP3B1,ARSB,ATG10,ATP6AP1L,BHMT,BHMT2,CCNH,CKMT2,CMYA5,COX7C,CRHBP,DHFR,DMGDH,EDIL3,F2R,F2RL1,F2RL2,FAM151B,HAPLN1,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,POC5,POLK,RASA1,RASGRF2,RPS23,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,TMEM167A,VCAN,WDR41,XRCC4,ZBED3,ZCCHC9,ZFYVE16"
TCGA.F5.6863	5	75591508	81541237	1817	-0.6352	SMALL-LOSS	NONFOCAL	40	"ACOT12,AGGF1,ANKRD34B,AP3B1,ARSB,ATG10,BHMT,BHMT2,CKMT2,CMYA5,CRHBP,DHFR,DMGDH,F2R,F2RL1,F2RL2,FAM151B,HOMER1,IQGAP2,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,OTP,PAPD4,PDE8B,RASGRF2,S100Z,SCAMP1,SERINC5,SPZ1,SSBP2,SV2C,TBCA,THBS4,WDR41,ZBED3,ZCCHC9,ZFYVE16"
TCGA.AG.3906.01A	5	76358895	78426724	114	-0.6235	SMALL-LOSS	NONFOCAL	13	"AGGF1,AP3B1,ARSB,BHMT,BHMT2,DMGDH,LHFPL2,OTP,PDE8B,SCAMP1,TBCA,WDR41,ZBED3"
TCGA.AA.3556	5	76950819	81527261	1322	-0.6975	SMALL-LOSS	NONFOCAL	28	"ACOT12,ANKRD34B,AP3B1,ARSB,ATG10,BHMT,BHMT2,CKMT2,CMYA5,DHFR,DMGDH,FAM151B,HOMER1,JMY,LHFPL2,MSH3,MTRNR2L2,MTX3,PAPD4,RASGRF2,SCAMP1,SERINC5,SPZ1,SSBP2,TBCA,THBS4,ZCCHC9,ZFYVE16"
TCGA.CM.5864	5	78730714	80001989	361	-0.5578	SMALL-LOSS	NONFOCAL	13	"ANKRD34B,CMYA5,DHFR,FAM151B,HOMER1,MSH3,MTRNR2L2,MTX3,PAPD4,SERINC5,SPZ1,THBS4,ZFYVE16"
TCGA.F4.6808	5	78791398	104599952	6301	-0.6018	SMALL-LOSS	NONFOCAL	70	"ACOT12,ADGRV1,ANKRD32,ANKRD34B,ARRDC3,ARSK,ATG10,ATP6AP1L,C5orf30,CAST,CCNH,CETN3,CHD1,CKMT2,CMYA5,COX7C,DHFR,EDIL3,ELL2,ERAP1,ERAP2,FAM151B,FAM172A,FAM174A,FAM81B,GIN1,GLRX,GPR150,HAPLN1,HOMER1,KIAA0825,LIX1,LNPEP,LYSMD3,MBLAC2,MCTP1,MEF2C,MSH3,MTRNR2L2,MTX3,NR2F1,NUDT12,PAM,PAPD4,PCSK1,POLR3G,POU5F2,PPIP5K2,RASA1,RASGRF2,RFESD,RGMB,RHOBTB3,RIOK2,RPS23,SERINC5,SLCO4C1,SLCO6A1,SPATA9,SPZ1,SSBP2,ST8SIA4,THBS4,TMEM161B,TMEM167A,TTC37,VCAN,XRCC4,ZCCHC9,ZFYVE16"
TCGA.AZ.4614	5	79011618	180692832	31071	-0.8145	SMALL-LOSS	NONFOCAL	577	Too-Many
TCGA.AA.A00D.01A	5	80762742	89769604	120	-0.6863	SMALL-LOSS	NONFOCAL	16	"ATG10,ATP6AP1L,CCNH,CETN3,COX7C,EDIL3,HAPLN1,MBLAC2,MEF2C,RASA1,RPS23,SSBP2,TMEM161B,TMEM167A,VCAN,XRCC4"
TCGA.NH.A50U	5	81682030	115957370	9314	-1.2942	SMALL-LOSS	NONFOCAL	84	"ADGRV1,ANKRD32,AP3S1,APC,ARL14EPL,ARRDC3,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CCNH,CDO1,CETN3,CHD1,COMMD10,COX7C,DCP2,EDIL3,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,HAPLN1,KCNN2,KIAA0825,LIX1,LNPEP,LVRN,LYSMD3,MAN2A1,MBLAC2,MCC,MCTP1,MEF2C,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM161B,TMEM167A,TMEM232,TRIM36,TSLP,TSSK1B,TTC37,VCAN,WDR36,XRCC4,YTHDC2"
TCGA.AA.3994	5	81778849	106808932	5945	-0.5458	SMALL-LOSS	NONFOCAL	50	"ADGRV1,ANKRD32,ARRDC3,ARSK,C5orf30,CAST,CCNH,CETN3,CHD1,COX7C,EDIL3,EFNA5,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,GIN1,GLRX,GPR150,HAPLN1,KIAA0825,LIX1,LNPEP,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,NUDT12,PAM,PCSK1,POLR3G,POU5F2,PPIP5K2,RASA1,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TMEM161B,TMEM167A,TTC37,VCAN,XRCC4"
TCGA.AA.3941	5	82445690	94394256	2570	-0.6464	SMALL-LOSS	NONFOCAL	21	"ADGRV1,ANKRD32,ARRDC3,CCNH,CETN3,COX7C,EDIL3,FAM172A,HAPLN1,KIAA0825,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,POLR3G,POU5F2,RASA1,TMEM161B,VCAN,XRCC4"
TCGA.D5.6530	5	84436651	106026560	4943	-0.6797	SMALL-LOSS	NONFOCAL	44	"ADGRV1,ANKRD32,ARRDC3,ARSK,C5orf30,CAST,CCNH,CETN3,CHD1,COX7C,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,NUDT12,PAM,PCSK1,POLR3G,POU5F2,PPIP5K2,RASA1,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TMEM161B,TTC37"
TCGA.DM.A28K	5	84791260	103693024	4369	-0.8849	SMALL-LOSS	NONFOCAL	44	"ADGRV1,ANKRD32,ARRDC3,ARSK,C5orf30,CAST,CCNH,CETN3,CHD1,COX7C,ELL2,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,NUDT12,PAM,PCSK1,POLR3G,POU5F2,PPIP5K2,RASA1,RFESD,RGMB,RHOBTB3,RIOK2,SLCO4C1,SLCO6A1,SPATA9,ST8SIA4,TMEM161B,TTC37"
TCGA.AA.3971	5	84832201	94348463	1958	-0.545	SMALL-LOSS	NONFOCAL	17	"ADGRV1,ANKRD32,ARRDC3,CCNH,CETN3,COX7C,FAM172A,KIAA0825,LYSMD3,MBLAC2,MCTP1,MEF2C,NR2F1,POLR3G,POU5F2,RASA1,TMEM161B"
TCGA.CM.4748	5	84988524	119017299	9449	-0.5563	SMALL-LOSS	NONFOCAL	84	"ADGRV1,ANKRD32,AP3S1,APC,ARL14EPL,ARRDC3,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CCNH,CDO1,CETN3,CHD1,COMMD10,COX7C,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,HSD17B4,KCNN2,KIAA0825,LIX1,LNPEP,LVRN,LYSMD3,MAN2A1,MBLAC2,MCC,MCTP1,MEF2C,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM161B,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.CM.4750.01A	5	86564238	118274852	934	-0.564	SMALL-LOSS	NONFOCAL	79	"ADGRV1,ANKRD32,AP3S1,APC,ARL14EPL,ARRDC3,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CCNH,CDO1,CETN3,CHD1,COMMD10,DCP2,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,KCNN2,KIAA0825,LIX1,LNPEP,LVRN,LYSMD3,MAN2A1,MBLAC2,MCC,MCTP1,MEF2C,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POLR3G,POU5F2,PPIP5K2,RASA1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM161B,TMEM232,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.AZ.4681	5	86983347	136156799	14276	-0.8794	SMALL-LOSS	NONFOCAL	173	Too-Many
TCGA.A6.2683	5	87486537	114386108	7219	-0.837	SMALL-LOSS	NONFOCAL	62	"ADGRV1,ANKRD32,APC,ARRDC3,ARSK,C5orf30,CAMK4,CAST,CETN3,CHD1,DCP2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,KCNN2,KIAA0825,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCC,MCTP1,MEF2C,NR2F1,NREP,NUDT12,PAM,PCSK1,PJA2,POLR3G,POU5F2,PPIP5K2,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TMEM161B,TMEM232,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.AA.3530	5	88474002	113201770	6567	-0.9652	SMALL-LOSS	NONFOCAL	59	"ADGRV1,ANKRD32,APC,ARRDC3,ARSK,C5orf30,CAMK4,CAST,CETN3,CHD1,DCP2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FER,GIN1,GLRX,GPR150,KIAA0825,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCC,MCTP1,NR2F1,NREP,NUDT12,PAM,PCSK1,PJA2,POLR3G,POU5F2,PPIP5K2,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TMEM232,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.AA.3850	5	89247908	94321143	1077	-0.64395	SMALL-LOSS	NONFOCAL	12	"ADGRV1,ANKRD32,ARRDC3,CETN3,FAM172A,KIAA0825,LYSMD3,MBLAC2,MCTP1,NR2F1,POLR3G,POU5F2"
TCGA.DM.A1D4	5	89285784	115041670	7094	-0.7857	SMALL-LOSS	NONFOCAL	67	"ADGRV1,ANKRD32,APC,ARRDC3,ARSK,C5orf30,CAMK4,CAST,CCDC112,CETN3,CHD1,DCP2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,KCNN2,KIAA0825,LIX1,LNPEP,LYSMD3,MAN2A1,MBLAC2,MCC,MCTP1,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POLR3G,POU5F2,PPIP5K2,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.CL.5918	5	89413052	95193739	1297	-0.6278	SMALL-LOSS	NONFOCAL	20	"ADGRV1,ANKRD32,ARRDC3,ARSK,CETN3,FAM172A,FAM81B,GLRX,GPR150,KIAA0825,LYSMD3,MBLAC2,MCTP1,NR2F1,POLR3G,POU5F2,RFESD,RHOBTB3,SPATA9,TTC37"
TCGA.A6.6140	5	90168010	117698983	7982	-0.727	SMALL-LOSS	NONFOCAL	70	"ADGRV1,ANKRD32,AP3S1,APC,ARL14EPL,ARRDC3,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CHD1,COMMD10,DCP2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,KCNN2,KIAA0825,LIX1,LNPEP,LVRN,MAN2A1,MCC,MCTP1,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POU5F2,PPIP5K2,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.AA.A00K.01A	5	90667169	124079745	811	-0.5287	SMALL-LOSS	NONFOCAL	88	"ANKRD32,AP3S1,APC,ARL14EPL,ARRDC3,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CEP120,CHD1,COMMD10,CSNK1G3,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,HSD17B4,KCNN2,KIAA0825,LIX1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MCC,MCTP1,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POU5F2,PPIC,PPIP5K2,PRDM6,PRR16,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.AA.A00L.01A	5	90667169	125822515	829	-0.6085	SMALL-LOSS	NONFOCAL	89	"ANKRD32,AP3S1,APC,ARL14EPL,ARRDC3,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CEP120,CHD1,COMMD10,CSNK1G3,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,GRAMD3,HSD17B4,KCNN2,KIAA0825,LIX1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MCC,MCTP1,NR2F1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,POU5F2,PPIC,PPIP5K2,PRDM6,PRR16,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.DM.A28H	5	92734470	134246854	12297	-0.6124	SMALL-LOSS	NONFOCAL	150	Too-Many
TCGA.AA.A00D.01A	5	93111807	125889932	814	-0.5553	SMALL-LOSS	NONFOCAL	87	"ALDH7A1,ANKRD32,AP3S1,APC,ARL14EPL,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CEP120,CHD1,COMMD10,CSNK1G3,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM172A,FAM174A,FAM81B,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,GRAMD3,HSD17B4,KCNN2,KIAA0825,LIX1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MCC,MCTP1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,PPIC,PPIP5K2,PRDM6,PRR16,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.AY.A71X	5	93119373	127624627	10545	-0.9557	SMALL-LOSS	NONFOCAL	97	"ALDH7A1,ANKRD32,AP3S1,APC,ARL14EPL,ARSK,ATG12,C5orf30,C5orf63,CAMK4,CAST,CCDC112,CDO1,CEP120,CHD1,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM172A,FAM174A,FAM81B,FBN2,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,GRAMD3,HSD17B4,KCNN2,KIAA0825,LIX1,LMNB1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MARCH3,MCC,MCTP1,MEGF10,NREP,NUDT12,PAM,PCSK1,PGGT1B,PHAX,PJA2,PPIC,PPIP5K2,PRDM6,PRR16,PRRC1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC12A2,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.AA.3866	5	94572737	129093607	10671	-0.692	SMALL-LOSS	NONFOCAL	98	"ADAMTS19,ALDH7A1,AP3S1,APC,ARL14EPL,ARSK,ATG12,C5orf30,C5orf63,CAMK4,CAST,CCDC112,CDO1,CEP120,CHD1,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM174A,FAM81B,FBN2,FBXL17,FEM1C,FER,FTMT,GIN1,GLRX,GPR150,GRAMD3,HSD17B4,ISOC1,KCNN2,KIAA1024L,LIX1,LMNB1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MARCH3,MCC,MCTP1,MEGF10,NREP,NUDT12,PAM,PCSK1,PGGT1B,PHAX,PJA2,PPIC,PPIP5K2,PRDM6,PRR16,PRRC1,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC12A2,SLC25A46,SLC27A6,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SPATA9,SRFBP1,SRP19,ST8SIA4,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.AA.3815.01A	5	94619529	118580042	730	-0.671	SMALL-LOSS	NONFOCAL	65	"AP3S1,APC,ARL14EPL,ARSK,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CHD1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,ELL2,EPB41L4A,ERAP1,ERAP2,FAM174A,FAM81B,FBXL17,FEM1C,FER,GIN1,GLRX,GPR150,KCNN2,LIX1,LNPEP,LVRN,MAN2A1,MCC,MCTP1,NREP,NUDT12,PAM,PCSK1,PGGT1B,PJA2,PPIP5K2,REEP5,RFESD,RGMB,RHOBTB3,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SPATA9,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,TTC37,WDR36,YTHDC2"
TCGA.AG.3726	5	94780870	96548475	550	-0.7288	SMALL-LOSS	NONFOCAL	16	"ARSK,CAST,ELL2,ERAP1,ERAP2,FAM81B,GLRX,GPR150,LIX1,LNPEP,PCSK1,RFESD,RHOBTB3,RIOK2,SPATA9,TTC37"
TCGA.AA.3655	5	95881484	122370645	8150	-0.9158	SMALL-LOSS	NONFOCAL	67	"AP3S1,APC,ARL14EPL,ATG12,C5orf30,CAMK4,CAST,CCDC112,CDO1,CHD1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,ERAP1,ERAP2,FAM170A,FAM174A,FBXL17,FEM1C,FER,FTMT,GIN1,HSD17B4,KCNN2,LIX1,LNPEP,LOC100505841,LOX,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIC,PPIP5K2,PRR16,REEP5,RGMB,RIOK2,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474"
TCGA.DM.A1D9	5	96138470	115778851	5827	-0.7507	SMALL-LOSS	NONFOCAL	50	"AP3S1,APC,ARL14EPL,ATG12,C5orf30,CAMK4,CCDC112,CDO1,CHD1,COMMD10,DCP2,EFNA5,EPB41L4A,ERAP1,ERAP2,FAM174A,FBXL17,FEM1C,FER,GIN1,KCNN2,LIX1,LNPEP,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIP5K2,REEP5,RGMB,RIOK2,SLC25A46,SLCO4C1,SLCO6A1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.3850	5	96698964	106675141	2381	-0.71645	SMALL-LOSS	NONFOCAL	11	"C5orf30,CHD1,FAM174A,GIN1,NUDT12,PAM,PPIP5K2,RGMB,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.AA.3556	5	97463407	103116238	1390	-0.6736	SMALL-LOSS	NONFOCAL	11	"C5orf30,CHD1,FAM174A,GIN1,NUDT12,PAM,PPIP5K2,RGMB,SLCO4C1,SLCO6A1,ST8SIA4"
TCGA.D5.6932	5	97992385	122841744	7703	-0.6265	SMALL-LOSS	NONFOCAL	63	"AP3S1,APC,ARL14EPL,ATG12,C5orf30,CAMK4,CCDC112,CDO1,CEP120,CHD1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FAM174A,FBXL17,FEM1C,FER,FTMT,GIN1,HSD17B4,KCNN2,LOC100505841,LOX,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIC,PPIP5K2,PRDM6,PRR16,REEP5,RGMB,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474"
TCGA.EI.6510	5	98496890	115321832	4953	-0.7713	SMALL-LOSS	NONFOCAL	41	"AP3S1,APC,ATG12,C5orf30,CAMK4,CCDC112,CDO1,DCP2,EFNA5,EPB41L4A,FAM174A,FBXL17,FEM1C,FER,GIN1,KCNN2,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIP5K2,REEP5,SLC25A46,SLCO4C1,SLCO6A1,SRP19,ST8SIA4,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AA.3496	5	99446175	127493678	8852	-0.6934	SMALL-LOSS	NONFOCAL	74	"ALDH7A1,AP3S1,APC,ARL14EPL,ATG12,C5orf30,C5orf63,CAMK4,CCDC112,CDO1,CEP120,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FAM174A,FBXL17,FEM1C,FER,FTMT,GIN1,GRAMD3,HSD17B4,KCNN2,LMNB1,LOC100505841,LOX,LVRN,MAN2A1,MARCH3,MCC,MEGF10,NREP,NUDT12,PAM,PGGT1B,PHAX,PJA2,PPIC,PPIP5K2,PRDM6,PRR16,PRRC1,REEP5,SEMA6A,SLC12A2,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,ST8SIA4,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.CA.6719	5	100279092	121866582	6830	-0.8798	SMALL-LOSS	NONFOCAL	54	"AP3S1,APC,ARL14EPL,ATG12,C5orf30,CAMK4,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FBXL17,FEM1C,FER,FTMT,GIN1,HSD17B4,KCNN2,LOC100505841,LOX,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIP5K2,PRR16,REEP5,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SNCAIP,SRFBP1,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474"
TCGA.AG.3612	5	100666317	113749459	3907	-0.8396	SMALL-LOSS	NONFOCAL	28	"APC,C5orf30,CAMK4,DCP2,EFNA5,EPB41L4A,FBXL17,FER,GIN1,KCNN2,MAN2A1,MCC,NREP,NUDT12,PAM,PJA2,PPIP5K2,REEP5,SLC25A46,SLCO4C1,SLCO6A1,SRP19,STARD4,TMEM232,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AY.6197	5	100907854	120447306	6085	-0.8493	SMALL-LOSS	NONFOCAL	48	"AP3S1,APC,ARL14EPL,ATG12,C5orf30,CAMK4,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FBXL17,FEM1C,FER,GIN1,HSD17B4,KCNN2,LVRN,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIP5K2,PRR16,REEP5,SEMA6A,SLC25A46,SLCO4C1,SLCO6A1,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AF.2687	5	101649995	112715237	3223	-0.8188	SMALL-LOSS	NONFOCAL	24	"APC,C5orf30,CAMK4,DCP2,EFNA5,EPB41L4A,FBXL17,FER,GIN1,MAN2A1,MCC,NREP,NUDT12,PAM,PJA2,PPIP5K2,REEP5,SLC25A46,SLCO6A1,SRP19,STARD4,TMEM232,TSLP,WDR36"
TCGA.F5.6864	5	102035776	112334856	2944	-0.5206	SMALL-LOSS	NONFOCAL	22	"APC,C5orf30,CAMK4,DCP2,EFNA5,EPB41L4A,FBXL17,FER,GIN1,MAN2A1,NREP,NUDT12,PAM,PJA2,PPIP5K2,REEP5,SLC25A46,SRP19,STARD4,TMEM232,TSLP,WDR36"
TCGA.AG.3591	5	103044061	125017929	7295	-0.7055	SMALL-LOSS	NONFOCAL	54	"AP3S1,APC,ARL14EPL,ATG12,CAMK4,CCDC112,CDO1,CEP120,COMMD10,CSNK1G3,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FBXL17,FEM1C,FER,FTMT,HSD17B4,KCNN2,LOC100505841,LOX,LVRN,MAN2A1,MCC,NREP,PGGT1B,PJA2,PPIC,PRDM6,PRR16,REEP5,SEMA6A,SLC25A46,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.DM.A28K	5	103775434	137177668	10701	-0.8802	SMALL-LOSS	NONFOCAL	135	Too-Many
TCGA.F4.6808	5	105313278	136815531	10272	-0.6233	SMALL-LOSS	NONFOCAL	133	Too-Many
TCGA.AH.6903	5	105401151	129797962	8069	-0.5528	SMALL-LOSS	NONFOCAL	71	"ADAMTS19,ALDH7A1,AP3S1,APC,ARL14EPL,ATG12,C5orf63,CAMK4,CCDC112,CDO1,CEP120,CHSY3,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FBN2,FBXL17,FEM1C,FER,FTMT,GRAMD3,HSD17B4,ISOC1,KCNN2,KIAA1024L,LMNB1,LOC100505841,LOX,LVRN,MAN2A1,MARCH3,MCC,MEGF10,NREP,PGGT1B,PHAX,PJA2,PPIC,PRDM6,PRR16,PRRC1,REEP5,SEMA6A,SLC12A2,SLC25A46,SLC27A6,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474,ZNF608"
TCGA.DM.A28G	5	105547100	117306325	4180	-0.7827	SMALL-LOSS	NONFOCAL	35	"AP3S1,APC,ARL14EPL,ATG12,CAMK4,CCDC112,CDO1,COMMD10,DCP2,EFNA5,EPB41L4A,FBXL17,FEM1C,FER,KCNN2,LVRN,MAN2A1,MCC,NREP,PGGT1B,PJA2,REEP5,SEMA6A,SLC25A46,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2"
TCGA.AZ.6599	5	105968182	122616211	5832	-0.7643	SMALL-LOSS	NONFOCAL	51	"AP3S1,APC,ARL14EPL,ATG12,CAMK4,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,EFNA5,EPB41L4A,FAM170A,FBXL17,FEM1C,FER,FTMT,HSD17B4,KCNN2,LOC100505841,LOX,LVRN,MAN2A1,MCC,NREP,PGGT1B,PJA2,PPIC,PRDM6,PRR16,REEP5,SEMA6A,SLC25A46,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TMEM232,TNFAIP8,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZNF474"
TCGA.DY.A1DG	5	106914654	180692832	24589	-0.5186	SMALL-LOSS	NONFOCAL	509	Too-Many
TCGA.EI.6507	5	110434260	112780913	930	-0.5273	SMALL-LOSS	NONFOCAL	11	"APC,CAMK4,DCP2,EPB41L4A,MCC,NREP,REEP5,SRP19,STARD4,TSSK1B,WDR36"
TCGA.CA.5256	5	110455201	114226622	1478	-0.7696	SMALL-LOSS	NONFOCAL	13	"APC,CAMK4,DCP2,EPB41L4A,KCNN2,MCC,NREP,REEP5,SRP19,STARD4,TSSK1B,WDR36,YTHDC2"
TCGA.DY.A1DC	5	110678049	130066915	6514	-0.6071	SMALL-LOSS	NONFOCAL	62	"ADAMTS19,ALDH7A1,AP3S1,APC,ARL14EPL,ATG12,C5orf63,CAMK4,CCDC112,CDO1,CEP120,CHSY3,COMMD10,CSNK1G3,CTXN3,DCP2,DMXL1,DTWD2,EPB41L4A,FAM170A,FBN2,FEM1C,FTMT,GRAMD3,HSD17B4,ISOC1,KCNN2,KIAA1024L,LMNB1,LOC100505841,LOX,LVRN,MARCH3,MCC,MEGF10,NREP,PGGT1B,PHAX,PPIC,PRDM6,PRR16,PRRC1,REEP5,SEMA6A,SLC12A2,SLC27A6,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,STARD4,TEX43,TICAM2,TMED7,TMED7-TICAM2,TNFAIP8,TRIM36,TSSK1B,YTHDC2,ZNF474,ZNF608"
TCGA.CL.5918	5	110837446	125278333	5209	-0.6188	SMALL-LOSS	NONFOCAL	44	"AP3S1,APC,ARL14EPL,ATG12,CCDC112,CDO1,CEP120,COMMD10,CSNK1G3,DCP2,DMXL1,DTWD2,EPB41L4A,FAM170A,FEM1C,FTMT,HSD17B4,KCNN2,LOC100505841,LOX,LVRN,MCC,NREP,PGGT1B,PPIC,PRDM6,PRR16,REEP5,SEMA6A,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,STARD4,TICAM2,TMED7,TMED7-TICAM2,TNFAIP8,TRIM36,TSSK1B,YTHDC2,ZNF474,ZNF608"
TCGA.CK.6751	5	111704561	122390142	3808	-0.5925	SMALL-LOSS	NONFOCAL	38	"AP3S1,APC,ARL14EPL,ATG12,CCDC112,CDO1,COMMD10,DCP2,DMXL1,DTWD2,EPB41L4A,FAM170A,FEM1C,FTMT,HSD17B4,KCNN2,LOC100505841,LOX,LVRN,MCC,PGGT1B,PPIC,PRR16,REEP5,SEMA6A,SNCAIP,SNX2,SNX24,SRFBP1,SRP19,TICAM2,TMED7,TMED7-TICAM2,TNFAIP8,TRIM36,TSSK1B,YTHDC2,ZNF474"
TCGA.AA.A00Q.01A	5	115177070	125889932	210	-0.543	SMALL-LOSS	NONFOCAL	27	"ALDH7A1,AP3S1,ARL14EPL,ATG12,CEP120,COMMD10,CSNK1G3,DMXL1,DTWD2,FAM170A,FTMT,GRAMD3,HSD17B4,LOC100505841,LOX,LVRN,PPIC,PRDM6,PRR16,SEMA6A,SNCAIP,SNX2,SNX24,SRFBP1,TNFAIP8,ZNF474,ZNF608"
TCGA.DM.A1D9	5	115810142	129797962	4499	-0.7249	SMALL-LOSS	NONFOCAL	37	"ADAMTS19,ALDH7A1,C5orf63,CEP120,CHSY3,CSNK1G3,CTXN3,DMXL1,DTWD2,FAM170A,FBN2,FTMT,GRAMD3,HSD17B4,ISOC1,KIAA1024L,LMNB1,LOC100505841,LOX,MARCH3,MEGF10,PHAX,PPIC,PRDM6,PRR16,PRRC1,SEMA6A,SLC12A2,SLC27A6,SNCAIP,SNX2,SNX24,SRFBP1,TEX43,TNFAIP8,ZNF474,ZNF608"
TCGA.QG.A5YX	5	118200451	135491395	5201	-1.0173	SMALL-LOSS	NONFOCAL	96	"ACSL6,ADAMTS19,AFF4,ALDH7A1,C5orf15,C5orf24,C5orf63,C5orf66,CAMLG,CATSPER3,CCNI2,CDC42SE2,CDKL3,CDKN2AIPNL,CEP120,CHSY3,CSF2,CSNK1G3,CTXN3,CXCL14,DCANP1,DDX46,DMXL1,DTWD2,FAM170A,FBN2,FBXL21,FNIP1,FSTL4,FTMT,GDF9,GRAMD3,H2AFY,HINT1,HSD17B4,HSPA4,IL13,IL3,IL4,IL5,IL9,IRF1,ISOC1,JADE2,KIAA1024L,KIF3A,LEAP2,LECT2,LMNB1,LOC100505841,LOX,LYRM7,MARCH3,MEGF10,MEIKIN,NEUROG1,P4HA2,PCBD2,PDLIM4,PHAX,PITX1,PPIC,PPP2CA,PRDM6,PRR16,PRRC1,RAD50,RAPGEF6,SAR1B,SEC24A,SEPT8,SHROOM1,SKP1,SLC12A2,SLC22A4,SLC22A5,SLC25A48,SLC27A6,SMAD5,SNCAIP,SNX2,SNX24,SOWAHA,SRFBP1,TCF7,TEX43,TGFBI,TIFAB,TNFAIP8,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10,ZNF474,ZNF608"
TCGA.AA.3560	5	118516877	151697265	10374	-0.7359	SMALL-LOSS	NONFOCAL	294	Too-Many
TCGA.A6.5656	5	125498240	127491564	541	-0.7126	SMALL-LOSS	NONFOCAL	11	"ALDH7A1,C5orf63,CTXN3,GRAMD3,LMNB1,MARCH3,MEGF10,PHAX,PRRC1,SLC12A2,TEX43"
TCGA.AA.A00L.01A	5	126253628	131308366	228	-0.5992	SMALL-LOSS	NONFOCAL	19	"ACSL6,ADAMTS19,C5orf63,CDC42SE2,CHSY3,CTXN3,FBN2,FNIP1,HINT1,ISOC1,KIAA1024L,LYRM7,MARCH3,MEGF10,MEIKIN,PRRC1,RAPGEF6,SLC12A2,SLC27A6"
TCGA.AA.A00Q.01A	5	126253628	132088519	350	-0.5932	SMALL-LOSS	NONFOCAL	33	"ACSL6,ADAMTS19,C5orf63,CCNI2,CDC42SE2,CHSY3,CSF2,CTXN3,FBN2,FNIP1,HINT1,IL13,IL3,IL4,IL5,IRF1,ISOC1,KIAA1024L,KIF3A,LYRM7,MARCH3,MEGF10,MEIKIN,P4HA2,PDLIM4,PRRC1,RAD50,RAPGEF6,SEPT8,SLC12A2,SLC22A4,SLC22A5,SLC27A6"
TCGA.EI.6508	5	127571898	180692832	17526	-0.7849	SMALL-LOSS	NONFOCAL	444	Too-Many
TCGA.A6.3808.01A	5	132149336	134670649	220	-0.783	SMALL-LOSS	NONFOCAL	29	"AFF4,C5orf15,C5orf24,C5orf66,CAMLG,CATSPER3,CDKL3,CDKN2AIPNL,DDX46,FSTL4,GDF9,H2AFY,HSPA4,JADE2,LEAP2,PCBD2,PITX1,PPP2CA,SAR1B,SEC24A,SHROOM1,SKP1,SOWAHA,TCF7,TXNDC15,UBE2B,UQCRQ,VDAC1,ZCCHC10"
TCGA.AG.A01W.01A	5	132580773	134154034	123	-0.5426	SMALL-LOSS	NONFOCAL	14	"C5orf15,CAMLG,CDKL3,CDKN2AIPNL,DDX46,FSTL4,JADE2,PPP2CA,SAR1B,SEC24A,SKP1,TCF7,UBE2B,VDAC1"
TCGA.AA.A00D.01A	5	134303645	135290403	31	-0.5392	SMALL-LOSS	NONFOCAL	12	"C5orf66,CATSPER3,CXCL14,DCANP1,FBXL21,H2AFY,IL9,LECT2,NEUROG1,PITX1,SLC25A48,TIFAB"
TCGA.AG.A01W.01A	5	138406157	139382287	92	-0.637	SMALL-LOSS	NONFOCAL	14	"CXXC5,DNAJC18,ECSCR,MATR3,MZB1,NRG2,PAIP2,PROB1,PSD2,SIL1,SLC23A1,SPATA24,TMEM173,UBE2D2"
TCGA.AA.A01K.01A	5	139903629	141037903	300	-0.5472	SMALL-LOSS	NONFOCAL	75	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,ARAP3,CD14,DIAPH1,DND1,EIF4EBP3,FCHSD1,HARS,HARS2,HDAC3,IK,NDUFA2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,RELL2,SLC25A2,SLC35A4,SRA1,TAF7,TMCO6,WDR55,ZMAT2"
TCGA.AA.A02E.01A	5	139914900	140810287	226	-0.6842	SMALL-LOSS	NONFOCAL	67	"ANKHD1,ANKHD1-EIF4EBP3,APBB3,CD14,DND1,EIF4EBP3,HARS,HARS2,IK,NDUFA2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,SLC25A2,SLC35A4,SRA1,TAF7,TMCO6,WDR55,ZMAT2"
TCGA.AG.A01J.01A	5	139931527	140075640	60	-1.1069	SMALL-LOSS	NONFOCAL	11	"APBB3,CD14,DND1,HARS,HARS2,IK,NDUFA2,SLC35A4,SRA1,TMCO6,WDR55"
TCGA.AA.A01D.01A	5	139938168	140787720	210	-0.7694	SMALL-LOSS	NONFOCAL	58	"APBB3,CD14,DND1,HARS,HARS2,IK,NDUFA2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,SLC25A2,SLC35A4,TAF7,TMCO6,WDR55,ZMAT2"
TCGA.CK.5914.01A	5	140044448	140476238	93	-0.7485	SMALL-LOSS	NONFOCAL	22	"DND1,HARS,HARS2,PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB2,WDR55,ZMAT2"
TCGA.AA.3967.01A	5	140080363	140306470	50	-0.5592	SMALL-LOSS	NONFOCAL	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,ZMAT2"
TCGA.A6.6140	5	140151700	140784426	109	-0.5427	SMALL-LOSS	NONFOCAL	47	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,SLC25A2,TAF7"
TCGA.AG.3906.01A	5	140165824	140306470	45	-0.8319	SMALL-LOSS	NONFOCAL	14	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1"
TCGA.AA.3930.01A	5	140165824	140346361	50	-0.5664	SMALL-LOSS	NONFOCAL	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2"
TCGA.AA.A00L.01A	5	140165824	140358467	46	-0.7482	SMALL-LOSS	NONFOCAL	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2"
TCGA.AG.A00Y.01A	5	140166494	140801323	145	-0.5897	SMALL-LOSS	NONFOCAL	51	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,SLC25A2,TAF7"
TCGA.AG.4009.01A	5	140174503	140362013	46	-0.5405	SMALL-LOSS	NONFOCAL	15	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2"
TCGA.AG.3611.01A	5	140236773	140890472	104	-0.6291	SMALL-LOSS	NONFOCAL	55	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,SLC25A2,TAF7"
TCGA.A6.3808.01A	5	140256745	140741530	90	-0.963	SMALL-LOSS	NONFOCAL	39	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGB1,PCDHGB2,SLC25A2,TAF7"
TCGA.AG.3906.01A	5	140307998	140874317	111	-0.5195	SMALL-LOSS	NONFOCAL	55	"PCDHA1,PCDHA10,PCDHA11,PCDHA12,PCDHA13,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHAC1,PCDHAC2,PCDHB1,PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5,SLC25A2,TAF7"
TCGA.CK.5914.01A	5	140476650	140868777	99	-1.3004	SMALL-LOSS	NONFOCAL	38	"PCDHB10,PCDHB11,PCDHB12,PCDHB13,PCDHB14,PCDHB15,PCDHB16,PCDHB2,PCDHB3,PCDHB4,PCDHB5,PCDHB6,PCDHB7,PCDHB8,PCDHB9,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,SLC25A2,TAF7"
TCGA.AA.A00Q.01A	5	140801323	156679556	835	-0.5629	SMALL-LOSS	NONFOCAL	129	Too-Many
TCGA.AG.4009.01A	5	140855736	140874317	7	-0.7701	SMALL-LOSS	NONFOCAL	22	"PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AG.3909.01A	5	140855736	140890472	9	-0.7192	SMALL-LOSS	NONFOCAL	22	"PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AG.A01W.01A	5	140865092	140931083	13	-0.78	SMALL-LOSS	NONFOCAL	23	"DIAPH1,PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB5,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5"
TCGA.AA.3811	5	142726169	148169327	1828	-0.6249	SMALL-LOSS	NONFOCAL	28	"C5orf46,DPYSL3,FBXO38,GPR151,GRXCR2,HMHB1,HTR4,JAKMIP2,KCTD16,LARS,NR3C1,PLAC8L1,POU4F3,PPP2R2B,PRELID2,RBM27,SCGB3A2,SH3RF2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A,TCERG1,YIPF5"
TCGA.F4.6808	5	143504009	162967002	6793	-0.6488	SMALL-LOSS	NONFOCAL	122	Too-Many
TCGA.A6.6648	5	146539499	147966389	519	-0.6588	SMALL-LOSS	NONFOCAL	14	"C5orf46,DPYSL3,FBXO38,HTR4,JAKMIP2,SCGB3A2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9,STK32A"
TCGA.AA.A00L.01A	5	146991820	147790151	55	-0.7415	SMALL-LOSS	NONFOCAL	11	"C5orf46,FBXO38,JAKMIP2,SCGB3A2,SPINK1,SPINK13,SPINK14,SPINK5,SPINK6,SPINK7,SPINK9"
TCGA.AA.A00D.01A	5	147051204	161116591	728	-0.5265	SMALL-LOSS	NONFOCAL	102	Too-Many
TCGA.AG.A01W.01A	5	149483955	150685001	209	-0.5907	SMALL-LOSS	NONFOCAL	23	"ANXA6,ARSI,CAMK2A,CCDC69,CD74,CDX1,CSF1R,DCTN4,GM2A,GPX3,IRGM,MYOZ3,NDST1,PDGFRB,RBM22,RPS14,SLC36A3,SLC6A7,SMIM3,SYNPO,TCOF1,TNIP1,ZNF300"
TCGA.AA.A01Z	5	150168889	176225130	9662	-0.8619	SMALL-LOSS	NONFOCAL	126	Too-Many
TCGA.AA.3560	5	151700328	180692832	10066	-0.7704	SMALL-LOSS	NONFOCAL	179	Too-Many
TCGA.AF.A56N	5	152221535	154498865	755	-0.7344	SMALL-LOSS	NONFOCAL	12	"CNOT8,FAM114A2,FAXDC2,GALNT10,GEMIN5,GRIA1,HAND1,KIF4B,LARP1,MFAP3,MRPL22,SAP30L"
TCGA.AF.A56N	5	155597453	176479648	7729	-0.7683	SMALL-LOSS	NONFOCAL	100	"ADAM19,ADRA1B,ARL10,ATP10B,ATP6V0E1,BNIP1,BOD1,C1QTNF2,C5orf47,C5orf52,C5orf58,CCNG1,CCNJL,CDHR2,CLINT1,CLTB,CPEB4,CPLX2,CREBRF,CYFIP2,DOCK2,DRD1,DUSP1,EBF1,EFCAB9,EIF4E1B,ERGIC1,FABP6,FAF2,FAM153B,FAM196B,FAM71B,FBXW11,FGF18,FNDC9,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GABRP,GPRIN1,HAVCR1,HAVCR2,HIGD2A,HK3,HMMR,HMP19,HRH2,IL12B,ITK,KCNIP1,KCNMB1,KIAA1191,LCP2,LOC101928093,LSM11,MAT2B,MED7,MSX2,NEURL1B,NIPAL4,NKX2-5,NOP16,NPM1,NUDCD2,PANK3,PTTG1,PWWP2A,RANBP17,RARS,RNF145,RNF44,RPL26L1,SFXN1,SGCD,SH3PXD2B,SIMC1,SLIT3,SLU7,SMIM23,SNCB,SOX30,SPDL1,STC2,STK10,TENM2,THG1L,THOC3,TIMD4,TLX3,TSPAN17,TTC1,UBLCP1,UBTD2,UIMC1,UNC5A,WWC1,ZBED8,ZNF346"
TCGA.AG.3605.01A	5	156671230	175110225	9	-0.8326	SMALL-LOSS	NONFOCAL	74	"ADAM19,ADRA1B,ATP10B,ATP6V0E1,BNIP1,BOD1,C1QTNF2,C5orf47,C5orf52,C5orf58,CCNG1,CCNJL,CLINT1,CPEB4,CREBRF,CYFIP2,DOCK2,DRD1,DUSP1,EBF1,EFCAB9,ERGIC1,FABP6,FAM196B,FBXW11,FGF18,FNDC9,FOXI1,GABRA1,GABRA6,GABRB2,GABRG2,GABRP,HMMR,HMP19,HRH2,IL12B,ITK,KCNIP1,KCNMB1,LCP2,LOC101928093,LSM11,MAT2B,MSX2,NEURL1B,NIPAL4,NKX2-5,NPM1,NUDCD2,PANK3,PTTG1,PWWP2A,RANBP17,RARS,RNF145,RPL26L1,SFXN1,SH3PXD2B,SLIT3,SLU7,SMIM23,SOX30,SPDL1,STC2,STK10,TENM2,THG1L,TLX3,TTC1,UBLCP1,UBTD2,WWC1,ZBED8"
TCGA.AA.A00Q.01A	5	156907897	159912312	120	-0.5343	SMALL-LOSS	NONFOCAL	19	"ADAM19,ADRA1B,C1QTNF2,C5orf52,CCNJL,CLINT1,EBF1,FABP6,IL12B,LSM11,PTTG1,PWWP2A,RNF145,SLU7,SOX30,THG1L,TTC1,UBLCP1,ZBED8"
TCGA.AG.3893	5	166582122	177101770	4038	-0.5859	SMALL-LOSS	NONFOCAL	81	"ARL10,ATP6V0E1,B4GALT7,BNIP1,BOD1,C5orf47,C5orf58,CDHR2,CLTB,CPEB4,CPLX2,CREBRF,DBN1,DDX41,DOCK2,DOK3,DRD1,DUSP1,EFCAB9,EIF4E1B,ERGIC1,F12,FAF2,FAM153B,FAM193B,FAM196B,FBXW11,FGF18,FGFR4,FOXI1,GABRP,GPRIN1,GRK6,HIGD2A,HK3,HMP19,HRH2,KCNIP1,KCNMB1,KIAA1191,LCP2,LMAN2,LOC101928093,MSX2,MXD3,NEURL1B,NKX2-5,NOP16,NPM1,NSD1,PANK3,PDLIM7,PFN3,PRELID1,PRR7,RAB24,RANBP17,RARS,RGS14,RNF44,RPL26L1,SFXN1,SH3PXD2B,SIMC1,SLC34A1,SLIT3,SMIM23,SNCB,SPDL1,STC2,STK10,TENM2,THOC3,TLX3,TMED9,TSPAN17,UBTD2,UIMC1,UNC5A,WWC1,ZNF346"
TCGA.CM.5344	5	167644292	170466711	1349	-0.6758	SMALL-LOSS	NONFOCAL	15	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,PANK3,RANBP17,RARS,SLIT3,SPDL1,TENM2,WWC1"
TCGA.AA.A00Q.01A	5	167988396	175306869	293	-0.5711	SMALL-LOSS	NONFOCAL	40	"ATP6V0E1,BNIP1,BOD1,C5orf47,C5orf58,CPEB4,CPLX2,CREBRF,DOCK2,DRD1,DUSP1,EFCAB9,ERGIC1,FAM196B,FBXW11,FGF18,FOXI1,GABRP,HMP19,HRH2,KCNIP1,KCNMB1,LCP2,LOC101928093,MSX2,NEURL1B,NKX2-5,NPM1,PANK3,RANBP17,RPL26L1,SFXN1,SH3PXD2B,SLIT3,SMIM23,SPDL1,STC2,STK10,TLX3,UBTD2"
TCGA.AA.A00D.01A	5	167995641	170816993	154	-0.6621	SMALL-LOSS	NONFOCAL	14	"C5orf58,DOCK2,FAM196B,FOXI1,GABRP,KCNIP1,KCNMB1,LCP2,NPM1,PANK3,RANBP17,SLIT3,SPDL1,TLX3"
TCGA.AA.A00D.01A	5	170847119	172359402	62	-0.6759	SMALL-LOSS	NONFOCAL	11	"DUSP1,EFCAB9,ERGIC1,FBXW11,FGF18,LOC101928093,NEURL1B,SH3PXD2B,SMIM23,STK10,UBTD2"
TCGA.CA.5254	5	174379879	178515059	1057	-0.5489	SMALL-LOSS	NONFOCAL	58	"ARL10,B4GALT7,CDHR2,CLK4,CLTB,COL23A1,CPLX2,DBN1,DDX41,DOK3,DRD1,EIF4E1B,F12,FAF2,FAM153A,FAM153B,FAM193B,FGFR4,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HRH2,KIAA1191,LMAN2,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RGS14,RMND5B,RNF44,SFXN1,SIMC1,SLC34A1,SNCB,THOC3,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.DM.A1DB	5	175571150	180692832	1232	-0.7413	SMALL-LOSS	NONFOCAL	83	"ADAMTS2,ARL10,B4GALT7,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,CNOT6,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM193B,FGFR4,FLT4,GFPT2,GNB2L1,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,KIAA1191,LMAN2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,OR2V1,OR2V2,OR2Y1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SCGB3A1,SIMC1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TRIM41,TRIM52,TRIM7,TSPAN17,UIMC1,UNC5A,ZFP2,ZFP62,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.QG.A5YW	5	175806849	179908091	987	-0.655	SMALL-LOSS	NONFOCAL	65	"ADAMTS2,B4GALT7,C5orf45,C5orf60,CANX,CBY3,CDHR2,CLK4,CLTB,COL23A1,DBN1,DDX41,DOK3,EIF4E1B,F12,FAF2,FAM153A,FAM193B,FGFR4,GFPT2,GPRIN1,GRK6,GRM6,HIGD2A,HK3,HNRNPAB,HNRNPH1,LMAN2,LTC4S,MAML1,MAPK9,MGAT4B,MXD3,N4BP3,NHP2,NOP16,NSD1,PDLIM7,PFN3,PHYKPL,PRELID1,PROP1,PRR7,RAB24,RASGEF1C,RGS14,RMND5B,RNF130,RNF44,RUFY1,SLC34A1,SNCB,SQSTM1,TBC1D9B,TMED9,TSPAN17,UIMC1,UNC5A,ZFP2,ZNF346,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.QG.A5Z1	5	177400247	180692832	951	-0.9314	SMALL-LOSS	NONFOCAL	46	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,N4BP3,NHP2,OR2V1,OR2V2,OR2Y1,PHYKPL,PROP1,RASGEF1C,RMND5B,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.3893	5	177400867	180692832	948	-0.6067	SMALL-LOSS	NONFOCAL	46	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,N4BP3,NHP2,OR2V1,OR2V2,OR2Y1,PHYKPL,PROP1,RASGEF1C,RMND5B,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AG.A01W.01A	5	177497691	178438854	98	-0.5219	SMALL-LOSS	NONFOCAL	12	"CLK4,COL23A1,GRM6,HNRNPAB,N4BP3,NHP2,PHYKPL,RMND5B,ZFP2,ZNF354A,ZNF354B,ZNF454"
TCGA.CK.5914.01A	5	177546533	178987009	117	-0.5493	SMALL-LOSS	NONFOCAL	16	"ADAMTS2,CLK4,COL23A1,GRM6,HNRNPAB,N4BP3,NHP2,PHYKPL,RMND5B,RUFY1,ZFP2,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.AA.A02E.01A	5	177577858	180686963	272	-0.5816	SMALL-LOSS	NONFOCAL	43	"ADAMTS2,BTNL3,BTNL8,BTNL9,C5orf45,C5orf60,CANX,CBY3,CLK4,CNOT6,COL23A1,FLT4,GFPT2,GNB2L1,GRM6,HNRNPAB,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,NHP2,OR2V1,OR2V2,OR2Y1,PHYKPL,RASGEF1C,RNF130,RUFY1,SCGB3A1,SQSTM1,TBC1D9B,TRIM41,TRIM52,TRIM7,ZFP2,ZFP62,ZNF354A,ZNF354B,ZNF354C,ZNF454,ZNF879"
TCGA.CK.5914.01A	5	179050005	179740755	106	-0.6785	SMALL-LOSS	NONFOCAL	14	"C5orf45,C5orf60,CANX,CBY3,GFPT2,HNRNPH1,LTC4S,MAML1,MAPK9,MGAT4B,RASGEF1C,RNF130,SQSTM1,TBC1D9B"
TCGA.AA.A00N.01A	5	179192327	180277962	142	-0.6993	SMALL-LOSS	NONFOCAL	16	"C5orf45,CNOT6,FLT4,GFPT2,LTC4S,MAML1,MAPK9,MGAT1,MGAT4B,OR2Y1,RASGEF1C,RNF130,SCGB3A1,SQSTM1,TBC1D9B,ZFP62"
TCGA.AG.3742	5	180157190	180692832	150	-0.7471	SMALL-LOSS	NONFOCAL	12	"BTNL3,BTNL8,BTNL9,GNB2L1,MGAT1,OR2V1,OR2V2,OR2Y1,TRIM41,TRIM52,TRIM7,ZFP62"
TCGA.AG.3598	6	203844	4492078	2038	-1.0747	SMALL-LOSS	NONFOCAL	26	"BPHL,C6orf201,DUSP22,ECI2,EXOC2,FAM217A,FAM50B,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,MYLK4,NQO2,PRPF4B,PSMG4,PXDC1,RIPK1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,TUBB2A,TUBB2B,WRNIP1"
TCGA.EI.6883	6	203844	9140657	4287	-0.6651	SMALL-LOSS	NONFOCAL	45	"BLOC1S5,BMP6,BPHL,C6orf201,CAGE1,CDYL,DSP,DUSP22,ECI2,EEF1E1,EXOC2,F13A1,FAM217A,FAM50B,FARS2,FOXC1,FOXF2,FOXQ1,GMDS,HUS1B,IRF4,LY86,LYRM4,MYLK4,NQO2,NRN1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SLC22A23,SLC35B3,SNRNP48,SSR1,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.D5.6536	6	203844	20285372	8748	-0.679	SMALL-LOSS	NONFOCAL	90	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDYL,DEK,DSP,DTNBP1,DUSP22,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,EXOC2,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,FOXC1,FOXF2,FOXQ1,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,HUS1B,ID4,IRF4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AF.2693	6	203844	28002962	11381	-0.58	SMALL-LOSS	NONFOCAL	186	Too-Many
TCGA.AA.3870	6	203844	29993195	12035	-0.5301	SMALL-LOSS	NONFOCAL	224	Too-Many
TCGA.AA.3655	6	203844	35863885	14036	-0.9394	SMALL-LOSS	NONFOCAL	402	Too-Many
TCGA.AG.3584	6	203844	37509457	14566	-0.6817	SMALL-LOSS	NONFOCAL	427	Too-Many
TCGA.AG.4021	6	203844	41736455	16283	-0.5904	SMALL-LOSS	NONFOCAL	456	Too-Many
TCGA.DT.5265	6	203844	170918030	54954	-0.5252	SMALL-LOSS	NONFOCAL	1010	Too-Many
TCGA.AA.A004.01A	6	304543	31477521	1426	-0.6742	SMALL-LOSS	NONFOCAL	268	Too-Many
TCGA.AA.A00O.01A	6	350759	27775950	1007	-0.5599	SMALL-LOSS	NONFOCAL	169	Too-Many
TCGA.DM.A28H	6	1909339	22565151	8710	-0.6083	SMALL-LOSS	NONFOCAL	87	"ADTRP,ATXN1,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CAP2,CD83,CDKAL1,CDYL,DEK,DSP,DTNBP1,E2F3,ECI2,EDN1,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM217A,FAM50B,FAM8A1,FARS2,GCM2,GCNT2,GFOD1,GMDS,GMPR,HIVEP1,ID4,JARID2,KDM1B,KIF13A,LOC100130357,LY86,LYRM4,MAK,MBOAT1,MCUR1,MYLIP,MYLK4,NEDD9,NHLRC1,NOL7,NQO2,NRN1,NUP153,PAK1IP1,PHACTR1,PPP1R3G,PRL,PRPF4B,PSMG4,PXDC1,RANBP9,RBM24,RIOK1,RIPK1,RNF144B,RNF182,RPP40,RREB1,SERPINB1,SERPINB6,SERPINB9,SIRT5,SLC22A23,SLC35B3,SMIM13,SNRNP48,SOX4,SSR1,STMND1,SYCP2L,TBC1D7,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TPMT,TUBB2A,TUBB2B,TXNDC5,WRNIP1"
TCGA.AA.A00N.01A	6	2749368	3267788	66	-1.2617	SMALL-LOSS	NONFOCAL	11	"BPHL,MYLK4,NQO2,PSMG4,RIPK1,SERPINB1,SERPINB6,SERPINB9,TUBB2A,TUBB2B,WRNIP1"
TCGA.CL.5917	6	3033804	11878157	4046	-0.7634	SMALL-LOSS	NONFOCAL	46	"ADTRP,BLOC1S5,BMP6,BPHL,C6orf201,C6orf52,CAGE1,CDYL,DSP,ECI2,EEF1E1,ELOVL2,ERVFRD-1,F13A1,FAM217A,FAM50B,FARS2,GCM2,GCNT2,LY86,LYRM4,MAK,NEDD9,NRN1,PAK1IP1,PPP1R3G,PRPF4B,PSMG4,PXDC1,RIOK1,RIPK1,RPP40,RREB1,SLC22A23,SLC35B3,SMIM13,SNRNP48,SSR1,SYCP2L,TFAP2A,TMEM14B,TMEM14C,TMEM170B,TUBB2A,TUBB2B,TXNDC5"
TCGA.DY.A1DG	6	3119558	5723180	1291	-0.546	SMALL-LOSS	NONFOCAL	16	"BPHL,C6orf201,CDYL,ECI2,FAM217A,FAM50B,FARS2,LYRM4,PPP1R3G,PRPF4B,PSMG4,PXDC1,RPP40,SLC22A23,TUBB2A,TUBB2B"
TCGA.A6.2678	6	10620216	16376623	2365	-0.6842	SMALL-LOSS	NONFOCAL	31	"ADTRP,ATXN1,C6orf52,CD83,DTNBP1,EDN1,ELOVL2,ERVFRD-1,GCM2,GCNT2,GFOD1,GMPR,HIVEP1,JARID2,LOC100130357,MAK,MCUR1,MYLIP,NEDD9,NOL7,PAK1IP1,PHACTR1,RANBP9,RNF182,SIRT5,SMIM13,SYCP2L,TBC1D7,TMEM14B,TMEM14C,TMEM170B"
TCGA.EI.6883	6	10836214	13080450	992	-0.6345	SMALL-LOSS	NONFOCAL	12	"ADTRP,EDN1,ELOVL2,ERVFRD-1,GCM2,HIVEP1,MAK,NEDD9,PHACTR1,SMIM13,SYCP2L,TMEM170B"
TCGA.F4.6854	6	14710532	23833991	3508	-0.5294	SMALL-LOSS	NONFOCAL	23	"ATXN1,CAP2,CDKAL1,DEK,DTNBP1,E2F3,FAM8A1,GMPR,HDGFL1,ID4,JARID2,KDM1B,KIF13A,MBOAT1,MYLIP,NHLRC1,NUP153,PRL,RBM24,RNF144B,SOX4,STMND1,TPMT"
TCGA.AA.3815.01A	6	15593204	21598379	191	-0.5662	SMALL-LOSS	NONFOCAL	20	"ATXN1,CAP2,CDKAL1,DEK,DTNBP1,E2F3,FAM8A1,GMPR,ID4,KDM1B,KIF13A,MBOAT1,MYLIP,NHLRC1,NUP153,RBM24,RNF144B,SOX4,STMND1,TPMT"
TCGA.A6.2678	6	16384664	34741916	6577	-0.6547	SMALL-LOSS	NONFOCAL	307	Too-Many
TCGA.EI.6883	6	18278576	30601820	4375	-0.6418	SMALL-LOSS	NONFOCAL	155	Too-Many
TCGA.DM.A28A	6	24377344	25944277	632	-0.5811	SMALL-LOSS	NONFOCAL	19	"ACOT13,ALDH5A1,C6orf229,C6orf62,DCDC2,FAM65B,GMNN,GPLD1,HIST1H2AA,HIST1H2BA,KIAA0319,LRRC16A,MRS2,SCGN,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TDP2"
TCGA.AA.3952	6	27171404	28077373	177	-0.5903	SMALL-LOSS	NONFOCAL	23	"HIST1H1B,HIST1H2AI,HIST1H2AJ,HIST1H2AK,HIST1H2AL,HIST1H2AM,HIST1H2BL,HIST1H2BM,HIST1H2BN,HIST1H2BO,HIST1H3H,HIST1H3I,HIST1H3J,HIST1H4J,HIST1H4K,HIST1H4L,OR2B2,OR2B6,POM121L2,PRSS16,ZNF165,ZNF184,ZNF391"
TCGA.AA.A00D.01A	6	29274490	29574646	19	-0.5257	SMALL-LOSS	NONFOCAL	11	"GABBR1,MAS1L,OR10C1,OR11A1,OR12D2,OR12D3,OR14J1,OR2H1,OR2H2,OR5V1,UBD"
TCGA.AA.A00N.01A	6	29576967	30080129	63	-0.8217	SMALL-LOSS	NONFOCAL	11	"GABBR1,HLA-A,HLA-F,HLA-G,LOC554223,MOG,PPP1R11,RNF39,TRIM31,ZFP57,ZNRD1"
TCGA.AA.A01Q.01A	6	31544237	32011494	257	-0.5884	SMALL-LOSS	NONFOCAL	44	"ABHD16A,AIF1,APOM,BAG6,C2,C4A,C4B,C4B_2,C6orf25,C6orf47,C6orf48,CFB,CLIC1,CSNK2B,CYP21A2,DDAH2,DXO,EHMT2,GPANK1,HSPA1A,HSPA1B,HSPA1L,LSM2,LST1,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6F,MSH5,NCR3,NELFE,NEU1,PRRC2A,SAPCD1,SKIV2L,SLC44A4,STK19,TNF,TNXB,VARS,VWA7,ZBTB12"
TCGA.AA.A004.01A	6	31594497	37631696	1035	-0.694	SMALL-LOSS	NONFOCAL	150	Too-Many
TCGA.AG.3909.01A	6	31856978	32065543	103	-0.8065	SMALL-LOSS	NONFOCAL	13	"C2,C4A,C4B,C4B_2,CFB,CYP21A2,DXO,EHMT2,NELFE,SKIV2L,STK19,TNXB,ZBTB12"
TCGA.EI.6883	6	32033006	41641488	3409	-0.6671	SMALL-LOSS	NONFOCAL	138	Too-Many
TCGA.AA.A00N.01A	6	32039746	32168596	69	-0.5206	SMALL-LOSS	NONFOCAL	12	"AGER,AGPAT1,ATF6B,EGFL8,FKBPL,GPSM3,NOTCH4,PBX2,PPT2,PRRT1,RNF5,TNXB"
TCGA.AA.3966	6	32268428	33562719	554	-1.0042	SMALL-LOSS	NONFOCAL	40	"B3GALT4,BAK1,BRD2,BTNL2,C6orf10,COL11A2,CUTA,DAXX,HLA-DMA,HLA-DMB,HLA-DOA,HLA-DOB,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQA2,HLA-DQB1,HLA-DQB2,HLA-DRA,HLA-DRB1,HLA-DRB5,HSD17B8,KIFC1,PFDN6,PHF1,PSMB8,PSMB9,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAP1,TAP2,TAPBP,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AA.A00N.01A	6	33148662	33424431	126	-0.8927	SMALL-LOSS	NONFOCAL	19	"B3GALT4,COL11A2,CUTA,DAXX,HSD17B8,KIFC1,PFDN6,PHF1,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAPBP,VPS52,WDR46,ZBTB22,ZBTB9"
TCGA.AG.3909.01A	6	33154327	33414305	112	-0.7159	SMALL-LOSS	NONFOCAL	18	"B3GALT4,COL11A2,CUTA,DAXX,HSD17B8,KIFC1,PFDN6,PHF1,RGL2,RING1,RPS18,RXRB,SLC39A7,SYNGAP1,TAPBP,VPS52,WDR46,ZBTB22"
TCGA.AA.A00O.01A	6	35704836	38913192	339	-0.6172	SMALL-LOSS	NONFOCAL	36	"ARMC12,BRPF3,BTBD9,C6orf222,C6orf89,CCDC167,CDKN1A,CLPS,CLPSL1,CLPSL2,CMTR1,CPNE5,DNAH8,ETV7,FGD2,GLO1,KCTD20,LHFPL5,MAPK13,MAPK14,MDGA1,MTCH1,PI16,PIM1,PNPLA1,PPIL1,PXT1,RAB44,RNF8,SLC26A8,SRPK1,SRSF3,STK38,TBC1D22B,TMEM217,ZFAND3"
TCGA.CM.5341	6	36598208	37874970	505	-1.0995	SMALL-LOSS	NONFOCAL	16	"C6orf89,CCDC167,CDKN1A,CMTR1,CPNE5,FGD2,MDGA1,MTCH1,PI16,PIM1,PPIL1,RAB44,RNF8,TBC1D22B,TMEM217,ZFAND3"
TCGA.AA.A00N.01A	6	41703795	42096363	62	-0.6608	SMALL-LOSS	NONFOCAL	11	"BYSL,C6orf132,CCND3,FRS3,MED20,PGC,PRICKLE4,TAF8,TFEB,TOMM6,USP49"
TCGA.AG.3909.01A	6	42890723	43042314	84	-0.5815	SMALL-LOSS	NONFOCAL	11	"CNPY3,CUL7,GNMT,KLC4,KLHDC3,MEA1,MRPL2,PEX6,PPP2R5D,PTCRA,RRP36"
TCGA.AA.3870	6	43479843	125364201	22556	-0.6004	SMALL-LOSS	NONFOCAL	303	Too-Many
TCGA.EI.6883	6	44324198	58432573	4103	-0.6481	SMALL-LOSS	NONFOCAL	73	"ADGRF1,ADGRF2,ADGRF4,ADGRF5,ANKRD66,BAG2,BEND6,BMP5,C6orf141,CD2AP,CDC5L,CENPQ,CLIC5,COL21A1,CRISP1,CRISP2,CRISP3,CYP39A1,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,ENPP4,ENPP5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MEP1A,MLIP,MUT,OPN5,PAQR8,PGK2,PKHD1,PLA2G7,PRIM2,PTCHD4,RAB23,RCAN2,RHAG,RUNX2,SLC25A27,SPATS1,SUPT3H,TDRD6,TFAP2B,TFAP2D,TINAG,TMEM14A,TNFRSF21,TRAM2,ZNF451"
TCGA.AA.3850	6	47732392	51829889	1098	-0.72545	SMALL-LOSS	NONFOCAL	19	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,GLYATL3,MUT,OPN5,PGK2,PKHD1,PTCHD4,RHAG,TFAP2B,TFAP2D"
TCGA.AA.3941	6	47771066	49920176	523	-1.2039	SMALL-LOSS	NONFOCAL	12	"C6orf141,CENPQ,CRISP1,CRISP2,CRISP3,DEFB133,GLYATL3,MUT,OPN5,PGK2,PTCHD4,RHAG"
TCGA.DM.A28H	6	48981029	57256869	2499	-0.6096	SMALL-LOSS	NONFOCAL	51	"BAG2,BEND6,BMP5,C6orf141,CENPQ,COL21A1,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DEFB133,DST,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MLIP,MUT,PAQR8,PGK2,PKHD1,PRIM2,RAB23,RHAG,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451"
TCGA.AA.3850	6	53874435	67126846	2329	-0.71715	SMALL-LOSS	NONFOCAL	22	"BAG2,BEND6,BMP5,COL21A1,DST,EYS,FAM83B,GFRAL,HCRTR2,HMGCLL1,KHDRBS2,KIAA1586,LGSN,LOC441155,MLIP,MTRNR2L9,PHF3,PRIM2,PTP4A1,RAB23,TINAG,ZNF451"
TCGA.AA.3941	6	53882736	70033535	3208	-1.2764	SMALL-LOSS	NONFOCAL	23	"ADGRB3,BAG2,BEND6,BMP5,COL21A1,DST,EYS,FAM83B,GFRAL,HCRTR2,HMGCLL1,KHDRBS2,KIAA1586,LGSN,LOC441155,MLIP,MTRNR2L9,PHF3,PRIM2,PTP4A1,RAB23,TINAG,ZNF451"
TCGA.NH.A6GA	6	57226181	170918030	34066	-0.6699	SMALL-LOSS	NONFOCAL	420	Too-Many
TCGA.EI.6883	6	58436236	124044739	17672	-0.652	SMALL-LOSS	NONFOCAL	208	Too-Many
TCGA.F4.6856	6	61972501	104153869	11986	-0.5236	SMALL-LOSS	NONFOCAL	115	Too-Many
TCGA.AA.3952	6	61972501	170918030	33922	-0.6172	SMALL-LOSS	NONFOCAL	419	Too-Many
TCGA.AG.3602	6	62236966	170918030	33802	-0.7092	SMALL-LOSS	NONFOCAL	419	Too-Many
TCGA.AM.5820	6	62515690	132644398	20221	-0.7427	SMALL-LOSS	NONFOCAL	241	Too-Many
TCGA.A6.2678	6	63087646	170918030	33694	-0.6511	SMALL-LOSS	NONFOCAL	417	Too-Many
TCGA.CK.4952.01A	6	64849661	132901130	2728	-0.8895	SMALL-LOSS	NONFOCAL	241	Too-Many
TCGA.AG.3575	6	65134115	170918030	33375	-0.6987	SMALL-LOSS	NONFOCAL	414	Too-Many
TCGA.AF.2693	6	67519341	170918030	32611	-0.5423	SMALL-LOSS	NONFOCAL	412	Too-Many
TCGA.CM.6675	6	67959831	170918030	32320	-1.0542	SMALL-LOSS	NONFOCAL	412	Too-Many
TCGA.AG.3584	6	69784173	170918030	31926	-0.654	SMALL-LOSS	NONFOCAL	412	Too-Many
TCGA.AA.3941	6	70034981	76833741	2013	-0.7753	SMALL-LOSS	NONFOCAL	29	"ADGRB3,B3GAT2,CD109,COL12A1,COL19A1,COL9A1,COX7A2,DDX43,DPPA5,EEF1A1,FAM135A,FILIP1,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,LMBRD1,MB21D1,MTO1,MYO6,OGFRL1,OOEP,RIMS1,SDHAF4,SENP6,SLC17A5,SMAP1,TMEM30A"
TCGA.F4.6854	6	72291183	78520316	1774	-0.5291	SMALL-LOSS	NONFOCAL	22	"CD109,COL12A1,COX7A2,DDX43,DPPA5,EEF1A1,FILIP1,HTR1B,IMPG1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MEI4,MTO1,MYO6,OOEP,RIMS1,SENP6,SLC17A5,TMEM30A"
TCGA.F5.6813	6	72445023	75218079	844	-0.5163	SMALL-LOSS	NONFOCAL	13	"CD109,DDX43,DPPA5,EEF1A1,KCNQ5,KHDC1,KHDC1L,KHDC3L,MB21D1,MTO1,OOEP,RIMS1,SLC17A5"
TCGA.AA.3860	6	72593882	170918030	31016	-0.6571	SMALL-LOSS	NONFOCAL	403	Too-Many
TCGA.AA.3655	6	76588104	170918030	29908	-0.9422	SMALL-LOSS	NONFOCAL	385	Too-Many
TCGA.AA.3941	6	76842127	82750074	1800	-1.1618	SMALL-LOSS	NONFOCAL	12	"BCKDHB,C6orf7,ELOVL4,FAM46A,HMGN3,HTR1B,IRAK1BP1,LCA5,MEI4,PHIP,SH3BGRL2,TTK"
TCGA.AA.3941	6	83089941	87702334	1252	-0.7534	SMALL-LOSS	NONFOCAL	16	"CEP162,CYB5R4,DOPEY1,HTR1E,ME1,MRAP2,NT5E,PGM3,PRSS35,RIPPLY2,RWDD2A,SNAP91,SNX14,SYNCRIP,TBX18,UBE3D"
TCGA.EI.6508	6	86415812	120056526	9674	-0.7398	SMALL-LOSS	NONFOCAL	134	Too-Many
TCGA.F4.6854	6	86797649	90030989	919	-0.5429	SMALL-LOSS	NONFOCAL	19	"AKIRIN2,C6orf163,C6orf165,CGA,CNR1,GABRR1,GABRR2,GJB7,HTR1E,ORC3,PM20D2,PNRC1,RARS2,RNGTT,SLC35A1,SMIM8,SPACA1,SRSF12,ZNF292"
TCGA.CM.5860	6	93235885	115349859	6342	-0.9374	SMALL-LOSS	NONFOCAL	77	"AIM1,AK9,AMD1,ARMC2,ASCC3,ATG5,BEND3,BVES,C6orf203,CCNC,CD164,CDC40,CDK19,CEP57L1,COQ3,DDO,EPHA7,FAM229B,FAXC,FBXL4,FHL5,FIG4,FOXO3,FUT9,FYN,GPR6,GPR63,GRIK2,GTF3C6,HACE1,HDAC2,HS3ST5,KIAA1919,KLHL32,LACE1,LAMA4,LIN28B,LOC100996634,MANEA,MARCKS,MCHR2,METTL24,MICAL1,MMS22L,NDUFAF4,NR2E1,OSTM1,PDSS2,PNISR,POPDC3,POU3F2,PPIL6,PRDM1,PRDM13,PREP,QRSL1,REV3L,RFPL4B,RPF2,RTN4IP1,SCML4,SEC63,SESN1,SIM1,SLC16A10,SLC22A16,SMPD2,SNX3,SOBP,TRAF3IP2,TSTD3,TUBE1,UFL1,USP45,WASF1,WISP3,ZBTB24"
TCGA.CM.6169	6	93312587	118981151	7243	-0.6365	SMALL-LOSS	NONFOCAL	102	Too-Many
TCGA.AA.A00A.01A	6	93953097	105821207	264	-0.7001	SMALL-LOSS	NONFOCAL	27	"ASCC3,BVES,CCNC,COQ3,EPHA7,FAXC,FBXL4,FHL5,FUT9,GPR63,GRIK2,HACE1,KLHL32,LIN28B,MANEA,MCHR2,MMS22L,NDUFAF4,PNISR,POPDC3,POU3F2,PRDM13,PREP,SIM1,TSTD3,UFL1,USP45"
TCGA.F4.6854	6	98580860	104879363	1764	-0.551	SMALL-LOSS	NONFOCAL	13	"ASCC3,CCNC,COQ3,FAXC,FBXL4,GRIK2,MCHR2,PNISR,POU3F2,PRDM13,SIM1,TSTD3,USP45"
TCGA.AA.3941	6	99195425	101402596	664	-0.5465	SMALL-LOSS	NONFOCAL	12	"ASCC3,CCNC,COQ3,FAXC,FBXL4,MCHR2,PNISR,POU3F2,PRDM13,SIM1,TSTD3,USP45"
TCGA.AG.3594	6	108797583	110597913	478	-0.5529	SMALL-LOSS	NONFOCAL	17	"AK9,ARMC2,CD164,CDC40,CEP57L1,FIG4,FOXO3,GPR6,LACE1,LOC100996634,METTL24,MICAL1,PPIL6,SESN1,SMPD2,WASF1,ZBTB24"
TCGA.AA.3941	6	112622976	129790435	4750	-0.9304	SMALL-LOSS	NONFOCAL	60	"ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,ECHDC1,FABP7,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,LAMA2,MAN1A1,MARCKS,MCM9,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,RFPL4B,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SERINC1,SLC35F1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TPD52L1,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.AG.3594	6	114204472	130216509	4477	-0.6027	SMALL-LOSS	NONFOCAL	60	"ARHGAP18,ASF1A,C6orf58,CENPW,CEP85L,CLVS2,COL10A1,DCBLD1,DSE,ECHDC1,FABP7,FAM162B,FAM184A,FAM26D,FAM26E,FAM26F,FRK,GJA1,GOPC,GPRC6A,HDAC2,HDDC2,HEY2,HINT3,HS3ST5,HSF2,KIAA0408,KPNA5,LAMA2,MAN1A1,MCM9,NCOA7,NKAIN2,NT5DC1,NUS1,PKIB,PLN,PTPRK,RFX6,RNF146,RNF217,ROS1,RSPH4A,RSPO3,RWDD1,SERINC1,SLC35F1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TMEM244,TPD52L1,TRAPPC3L,TRDN,TRMT11,TSPYL1,TSPYL4,VGLL2,ZUFSP"
TCGA.CA.5254	6	117156864	119319840	616	-1.1321	SMALL-LOSS	NONFOCAL	12	"ASF1A,CEP85L,DCBLD1,FAM184A,GOPC,MCM9,NUS1,PLN,RFX6,ROS1,SLC35F1,VGLL2"
TCGA.EI.6508	6	120855430	130177384	2700	-0.7197	SMALL-LOSS	NONFOCAL	29	"ARHGAP18,C6orf58,CENPW,CLVS2,ECHDC1,FABP7,GJA1,HDDC2,HEY2,HINT3,HSF2,KIAA0408,LAMA2,NCOA7,NKAIN2,PKIB,PTPRK,RNF146,RNF217,RSPO3,SERINC1,SMPDL3A,SOGA3,TBC1D32,THEMIS,TMEM244,TPD52L1,TRDN,TRMT11"
TCGA.F4.6854	6	123548373	129173593	1599	-0.5147	SMALL-LOSS	NONFOCAL	18	"C6orf58,CENPW,ECHDC1,HDDC2,HEY2,HINT3,KIAA0408,NCOA7,NKAIN2,PTPRK,RNF146,RNF217,RSPO3,SOGA3,THEMIS,TPD52L1,TRDN,TRMT11"
TCGA.EI.6883	6	124318251	128001106	1029	-0.6426	SMALL-LOSS	NONFOCAL	15	"C6orf58,CENPW,ECHDC1,HDDC2,HEY2,HINT3,KIAA0408,NCOA7,NKAIN2,RNF146,RNF217,RSPO3,SOGA3,TPD52L1,TRMT11"
TCGA.EI.7002	6	129796619	133074132	1230	-1.1859	SMALL-LOSS	NONFOCAL	27	"AKAP7,ARG1,ARHGAP18,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,L3MBTL3,LAMA2,MED23,MOXD1,OR2A4,SAMD3,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TMEM200A,TMEM244,VNN1,VNN2,VNN3"
TCGA.AA.3941	6	129796619	134048963	1570	-0.5398	SMALL-LOSS	NONFOCAL	30	"AKAP7,ARG1,ARHGAP18,CTAGE9,CTGF,ENPP1,ENPP3,EPB41L2,EYA4,L3MBTL3,LAMA2,MED23,MOXD1,OR2A4,RPS12,SAMD3,SLC18B1,SMLR1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,TMEM200A,TMEM244,VNN1,VNN2,VNN3"
TCGA.F4.6854	6	132460079	133354793	377	-0.5559	SMALL-LOSS	NONFOCAL	13	"MOXD1,RPS12,SLC18B1,STX7,TAAR1,TAAR2,TAAR5,TAAR6,TAAR8,TAAR9,VNN1,VNN2,VNN3"
TCGA.AM.5820	6	132872357	170179429	13293	-0.7468	SMALL-LOSS	NONFOCAL	170	Too-Many
TCGA.EI.7002	6	137517490	151728471	4554	-1.2151	SMALL-LOSS	NONFOCAL	64	"ABRACL,ADAT2,ADGB,ADGRG6,AIG1,AKAP12,ARFGEF3,CCDC28A,CITED2,ECT2L,EPM2A,FBXO30,FUCA2,GINM1,GRM1,HEBP2,HECA,HIVEP2,IFNGR1,IYD,KATNA1,LATS1,LOC100507462,LRP11,LTV1,MTHFD1L,NHSL1,NMBR,NUP43,OLIG3,PBOV1,PCMT1,PERP,PEX3,PHACTR2,PLAGL1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,REPS1,RMND1,SAMD5,SASH1,SF3B5,SHPRH,STX11,STXBP5,SUMO4,TAB2,TNFAIP3,TXLNB,ULBP1,ULBP2,ULBP3,UST,UTRN,VTA1,ZBTB2,ZC2HC1B,ZC3H12D"
TCGA.AG.3594	6	143539805	152010533	2981	-0.5856	SMALL-LOSS	NONFOCAL	46	"ADAT2,ADGB,AIG1,AKAP12,ARMT1,CCDC170,EPM2A,FBXO30,FUCA2,GINM1,GRM1,IYD,KATNA1,LATS1,LRP11,LTV1,MTHFD1L,NUP43,PCMT1,PEX3,PHACTR2,PLAGL1,PLEKHG1,PPIL4,PPP1R14C,RAB32,RAET1E,RAET1G,RAET1L,RMND1,SAMD5,SASH1,SF3B5,SHPRH,STX11,STXBP5,SUMO4,TAB2,ULBP1,ULBP2,ULBP3,UST,UTRN,ZBTB2,ZC2HC1B,ZC3H12D"
TCGA.AA.3680	6	149036427	164739002	5988	-0.7053	SMALL-LOSS	NONFOCAL	75	"ACAT2,AGPAT4,AKAP12,ARID1B,ARMT1,C6orf99,CCDC170,CLDN20,CNKSR3,DYNLT1,ESR1,EZR,FBXO5,FNDC1,GINM1,GTF2H5,IGF2R,IPCEF1,IYD,KATNA1,LATS1,LPA,LRP11,MAP3K4,MAS1,MRPL18,MTHFD1L,MTRF1L,MYCT1,NOX3,NUP43,OPRM1,PACRG,PARK2,PCMT1,PLEKHG1,PLG,PNLDC1,PPIL4,PPP1R14C,QKI,RAET1E,RAET1G,RAET1L,RGS17,RMND1,RSPH3,SCAF8,SERAC1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SUMO4,SYNE1,SYNJ2,SYTL3,TAB2,TAGAP,TCP1,TFB1M,TIAM2,TMEM181,TMEM242,TULP4,ULBP1,ULBP2,ULBP3,UST,VIP,WTAP,ZBTB2,ZC3H12D,ZDHHC14"
TCGA.AA.A00N.01A	6	149771852	150537915	95	-0.563	SMALL-LOSS	NONFOCAL	15	"GINM1,KATNA1,LATS1,LRP11,NUP43,PCMT1,PPIL4,PPP1R14C,RAET1E,RAET1G,RAET1L,ULBP1,ULBP2,ULBP3,ZC3H12D"
TCGA.AA.3509.01A	6	157099191	170893340	760	-0.7728	SMALL-LOSS	NONFOCAL	66	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf99,CCR6,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,HGC6.3,IGF2R,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,THBS2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14"
TCGA.AG.3594	6	157491122	168385773	4288	-0.6418	SMALL-LOSS	NONFOCAL	51	"ACAT2,AGPAT4,ARID1B,C6orf118,C6orf99,CCR6,DYNLT1,EZR,FGFR1OP,FNDC1,GPR31,GTF2H5,HGC6.3,IGF2R,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,PACRG,PARK2,PDE10A,PLG,PNLDC1,PRR18,QKI,RNASET2,RPS6KA2,RSPH3,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TCP1,TCP10,TCP10L2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WTAP,ZDHHC14"
TCGA.F5.6813	6	163539288	169980899	2809	-0.5403	SMALL-LOSS	NONFOCAL	25	"C6orf118,CCR6,DACT2,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PACRG,PDE10A,PRR18,QKI,RNASET2,RPS6KA2,SFT2D1,SMOC2,T,TCP10,TCP10L2,THBS2,TTLL2,UNC93A,WDR27"
TCGA.A6.5665	6	166038927	168519223	1014	-0.5581	SMALL-LOSS	NONFOCAL	18	"CCR6,FGFR1OP,FRMD1,GPR31,HGC6.3,KIF25,MLLT4,MPC1,PDE10A,PRR18,RNASET2,RPS6KA2,SFT2D1,T,TCP10,TCP10L2,TTLL2,UNC93A"
TCGA.A6.5661	7	44407	7058671	1744	-0.7607	SMALL-LOSS	NONFOCAL	71	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM20C,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WI2-2373I1.2,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.A6.2672	7	46238	3008327	549	-0.9052	SMALL-LOSS	NONFOCAL	35	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,DNAAF5,EIF3B,ELFN1,FAM20C,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PDGFA,PRKAR1B,PSMG3,SNX8,SUN1,TMEM184A,TTYH3,UNCX,WI2-2373I1.2,ZFAND2A"
TCGA.AA.A01I.01A	7	538119	6864063	427	-0.5333	SMALL-LOSS	NONFOCAL	69	"ACTB,ADAP1,AIMP2,AMZ1,ANKRD61,AP5Z1,BRAT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COX19,CYP2W1,CYTH3,DAGLB,DNAAF5,EIF2AK1,EIF3B,ELFN1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRID2IP,GRIFIN,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MICALL2,MMD2,NUDT1,OCM,PAPOLB,PDGFA,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,SNX8,SUN1,TMEM184A,TNRC18,TTYH3,UNCX,USP42,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF316,ZNF853"
TCGA.A6.3808.01A	7	882525	2583233	208	-1.1489	SMALL-LOSS	NONFOCAL	25	"ADAP1,BRAT1,C7orf50,CHST12,COX19,CYP2W1,EIF3B,ELFN1,FTSJ2,GET4,GPER1,GPR146,GRIFIN,INTS1,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PSMG3,SNX8,SUN1,TMEM184A,UNCX,ZFAND2A"
TCGA.AA.A00N.01A	7	923789	2998076	264	-0.5803	SMALL-LOSS	NONFOCAL	29	"ADAP1,AMZ1,BRAT1,C7orf50,CARD11,CHST12,COX19,CYP2W1,EIF3B,ELFN1,FTSJ2,GET4,GNA12,GPER1,GPR146,GRIFIN,INTS1,IQCE,LFNG,MAD1L1,MAFK,MICALL2,NUDT1,PSMG3,SNX8,TMEM184A,TTYH3,UNCX,ZFAND2A"
TCGA.A6.5665	7	4222088	6965894	595	-0.6379	SMALL-LOSS	NONFOCAL	36	"ACTB,AIMP2,ANKRD61,AP5Z1,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,FBXL18,FOXK1,FSCN1,GRID2IP,KDELR2,MMD2,OCM,PAPOLB,PMS2,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RSPH10B,RSPH10B2,SDK1,SLC29A4,TNRC18,USP42,WIPI2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.A01C.01A	7	5752298	6864063	156	-0.5424	SMALL-LOSS	NONFOCAL	22	"AIMP2,ANKRD61,C7orf26,CCZ1,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,OCM,PMS2,RAC1,RNF216,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.3509.01A	7	5942242	6439692	92	-0.5894	SMALL-LOSS	NONFOCAL	11	"AIMP2,ANKRD61,CCZ1,CYTH3,EIF2AK1,FAM220A,PMS2,RAC1,RSPH10B,RSPH10B2,USP42"
TCGA.AA.A00N.01A	7	6085693	6864063	127	-1.0014	SMALL-LOSS	NONFOCAL	16	"C7orf26,CCZ1B,CYTH3,DAGLB,EIF2AK1,FAM220A,GRID2IP,KDELR2,RAC1,RSPH10B,RSPH10B2,USP42,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AA.A01K.01A	7	6449416	6864063	53	-0.7579	SMALL-LOSS	NONFOCAL	11	"C7orf26,CCZ1B,DAGLB,GRID2IP,KDELR2,RSPH10B,RSPH10B2,ZDHHC4,ZNF12,ZNF316,ZNF853"
TCGA.AG.3909.01A	7	27134037	27237799	22	-1.0572	SMALL-LOSS	NONFOCAL	11	"HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.AA.A00N.01A	7	27134037	27238796	24	-1.0942	SMALL-LOSS	NONFOCAL	11	"HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.AG.4009.01A	7	27134037	27284730	24	-0.5843	SMALL-LOSS	NONFOCAL	12	"EVX1,HOXA1,HOXA10,HOXA11,HOXA13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9"
TCGA.A6.3808.01A	7	43992174	44282791	81	-0.7341	SMALL-LOSS	NONFOCAL	11	"AEBP1,CAMK2B,DBNL,GCK,MYL7,PGAM2,POLD2,POLM,SPDYE1,UBE2D4,YKT6"
TCGA.CM.6170	7	64165025	113769767	12289	-0.6432	SMALL-LOSS	NONFOCAL	311	Too-Many
TCGA.AA.A00N.01A	7	74009277	75203019	107	-0.5534	SMALL-LOSS	NONFOCAL	12	"GATSL2,GTF2I,GTF2IRD1,GTF2IRD2,GTF2IRD2B,HIP1,NCF1,POM121C,SPDYE5,TRIM73,TRIM74,WBSCR16"
TCGA.A6.6653	7	74068450	75465484	86	-0.8931	SMALL-LOSS	NONFOCAL	13	"CCL24,CCL26,GATSL2,GTF2I,GTF2IRD2,GTF2IRD2B,HIP1,NCF1,POM121C,SPDYE5,TRIM73,TRIM74,WBSCR16"
TCGA.AA.3556	7	82454671	88441935	1578	-0.6695	SMALL-LOSS	NONFOCAL	19	"ABCB1,ABCB4,ADAM22,C7orf62,CROT,DBF4,DMTF1,GRM3,KIAA1324L,PCLO,RUNDC3B,SEMA3A,SEMA3D,SEMA3E,SLC25A40,SRI,STEAP4,TMEM243,ZNF804B"
TCGA.A6.5661	7	97470489	101858143	710	-0.8363	SMALL-LOSS	NONFOCAL	98	"ACHE,ACTL6B,AGFG2,AP1S1,AP4M1,ARPC1A,ARPC1B,ASNS,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BHLHA15,BRI3,BUD31,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CPSF4,CUX1,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,EPHB4,EPO,FAM200A,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,GS1-259H13.2,IFT22,KPNA7,LAMTOR4,LMTK2,LRCH4,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAT16,NPTX2,NYAP1,OCM2,OR2AE1,PCOLCE,PDAP1,PILRA,PILRB,PLOD3,POP7,PPP1R35,PTCD1,PVRIG,SAP25,SERPINE1,SLC12A9,SMURF1,SPDYE3,SRRT,STAG3,TAF6,TECPR1,TFR2,TMEM130,TRIM4,TRIM56,TRIP6,TRRAP,TSC22D4,UFSP1,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZNHIT1,ZSCAN21,ZSCAN25"
TCGA.A6.5665	7	97503139	101858143	700	-0.6635	SMALL-LOSS	NONFOCAL	97	"ACHE,ACTL6B,AGFG2,AP1S1,AP4M1,ARPC1A,ARPC1B,ATP5J2,ATP5J2-PTCD1,AZGP1,BAIAP2L1,BHLHA15,BRI3,BUD31,C7orf43,C7orf61,CLDN15,CNPY4,COL26A1,COPS6,CPSF4,CUX1,CYP3A4,CYP3A43,CYP3A5,CYP3A7,CYP3A7-CYP3A51P,EPHB4,EPO,FAM200A,FBXO24,FIS1,GAL3ST4,GATS,GIGYF1,GJC3,GNB2,GPC2,GS1-259H13.2,IFT22,KPNA7,LAMTOR4,LMTK2,LRCH4,MBLAC1,MCM7,MEPCE,MOGAT3,MOSPD3,MUC12,MUC17,MUC3A,MYL10,NAT16,NPTX2,NYAP1,OCM2,OR2AE1,PCOLCE,PDAP1,PILRA,PILRB,PLOD3,POP7,PPP1R35,PTCD1,PVRIG,SAP25,SERPINE1,SLC12A9,SMURF1,SPDYE3,SRRT,STAG3,TAF6,TECPR1,TFR2,TMEM130,TRIM4,TRIM56,TRIP6,TRRAP,TSC22D4,UFSP1,VGF,ZAN,ZASP,ZCWPW1,ZKSCAN1,ZKSCAN5,ZNF3,ZNF394,ZNF655,ZNF789,ZNHIT1,ZSCAN21,ZSCAN25"
TCGA.DM.A28H	7	99388999	100010769	74	-0.5397	SMALL-LOSS	NONFOCAL	25	"AP4M1,AZGP1,C7orf43,CNPY4,COPS6,CYP3A43,GAL3ST4,GATS,GJC3,GPC2,LAMTOR4,MBLAC1,MCM7,OR2AE1,PILRA,PILRB,PVRIG,SPDYE3,STAG3,TAF6,TRIM4,ZCWPW1,ZKSCAN1,ZNF3,ZSCAN21"
TCGA.AA.A00N.01A	7	100000082	100352802	131	-0.6178	SMALL-LOSS	NONFOCAL	20	"ACTL6B,AGFG2,C7orf61,EPO,FBXO24,GIGYF1,GNB2,LRCH4,MEPCE,MOSPD3,NYAP1,PCOLCE,POP7,PPP1R35,SAP25,TFR2,TSC22D4,ZAN,ZASP,ZCWPW1"
TCGA.AA.A01Q.01A	7	100146395	100320593	85	-0.5916	SMALL-LOSS	NONFOCAL	13	"ACTL6B,AGFG2,EPO,FBXO24,GIGYF1,GNB2,LRCH4,MOSPD3,PCOLCE,POP7,SAP25,TFR2,ZASP"
TCGA.AA.A01Q.01A	7	100806268	102309335	95	-0.5163	SMALL-LOSS	NONFOCAL	26	"ALKBH4,CLDN15,COL26A1,CUX1,FIS1,IFT22,LOC100289561,LRWD1,MOGAT3,MYL10,NAT16,ORAI2,PLOD3,POLR2J,POLR2J2,POLR2J3,PRKRIP1,RASA4,RASA4B,SH2B2,SPDYE2,SPDYE2B,SPDYE6,UPK3BL,VGF,ZNHIT1"
TCGA.AA.3556	7	100916664	106528272	1610	-0.623	SMALL-LOSS	NONFOCAL	41	"ALKBH4,ARMC10,ATXN7L1,CCDC71L,CDHR3,COL26A1,CUX1,DNAJC2,FAM185A,FBXL13,IFT22,KMT2E,LHFPL3,LOC100289561,LRRC17,LRWD1,MYL10,NAMPT,NAPEPLD,ORAI2,ORC5,PIK3CG,PMPCB,POLR2J,POLR2J2,POLR2J3,PRKRIP1,PSMC2,PUS7,RASA4,RASA4B,RELN,RINT1,SH2B2,SLC26A5,SPDYE2,SPDYE2B,SPDYE6,SRPK2,SYPL1,UPK3BL"
TCGA.A6.3808.01A	7	101740597	102401671	82	-0.7577	SMALL-LOSS	NONFOCAL	17	"ALKBH4,CUX1,FAM185A,LOC100289561,LRWD1,ORAI2,POLR2J,POLR2J2,POLR2J3,PRKRIP1,RASA4,RASA4B,SH2B2,SPDYE2,SPDYE2B,SPDYE6,UPK3BL"
TCGA.AA.A01R	7	107386250	117885513	2639	-0.5807	SMALL-LOSS	NONFOCAL	35	"ANKRD7,ASZ1,C7orf60,C7orf66,CAPZA2,CAV1,CAV2,CBLL1,CFTR,CTTNBP2,DLD,DNAJB9,DOCK4,FOXP2,GPR85,IFRD1,IMMP2L,LAMB1,LAMB4,LRRN3,LSM8,LSMEM1,MDFIC,MET,NRCAM,PNPLA8,PPP1R3A,SLC26A3,ST7,TES,TFEC,THAP5,TMEM168,WNT2,ZNF277"
TCGA.AA.3966	7	118282716	159119219	11809	-0.5681	SMALL-LOSS	NONFOCAL	264	Too-Many
TCGA.AA.3850	7	118472597	127062370	2149	-0.60775	SMALL-LOSS	NONFOCAL	27	"AASS,ASB15,C7orf77,CADPS2,CPED1,FAM3C,FEZF1,GPR37,GRM8,HYAL4,ING3,IQUB,KCND2,LMOD2,NDUFA5,POT1,PTPRZ1,RNF133,RNF148,SLC13A1,SPAM1,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16,ZNF800"
TCGA.A6.5665	7	138120082	140244626	570	-0.6437	SMALL-LOSS	NONFOCAL	22	"ATP6V0A4,C7orf55,C7orf55-LUC7L2,CLEC2L,DENND2A,HIPK2,KDM7A,KIAA1549,KLRG2,LUC7L2,MKRN1,PARP12,RAB19,SLC37A3,SVOPL,TBXAS1,TMEM213,TRIM24,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.A6.2672	7	138124605	140335569	578	-0.6864	SMALL-LOSS	NONFOCAL	22	"ATP6V0A4,C7orf55,C7orf55-LUC7L2,CLEC2L,DENND2A,HIPK2,KDM7A,KIAA1549,KLRG2,LUC7L2,MKRN1,PARP12,RAB19,SLC37A3,SVOPL,TBXAS1,TMEM213,TRIM24,TTC26,UBN2,ZC3HAV1,ZC3HAV1L"
TCGA.AG.A026	7	141717224	143430203	445	-0.5607	SMALL-LOSS	NONFOCAL	26	"C7orf34,CASP2,CLCN1,CTAGE15,EPHA1,EPHB6,FAM131B,GSTK1,KEL,MGAM,MGAM2,MTRNR2L6,OR6V1,OR9A2,PIP,PRSS1,PRSS58,TAS2R39,TAS2R40,TAS2R41,TAS2R60,TCAF2,TMEM139,TRPV5,TRPV6,ZYX"
TCGA.AA.A01Z	7	141808572	142822209	318	-0.8139	SMALL-LOSS	NONFOCAL	11	"C7orf34,EPHB6,KEL,MGAM2,MTRNR2L6,OR6V1,OR9A2,PRSS1,PRSS58,TRPV5,TRPV6"
TCGA.AG.A020	7	142609748	159119219	5087	-0.9503	SMALL-LOSS	NONFOCAL	119	Too-Many
TCGA.AA.A01Z	7	143807303	159119219	4851	-0.8916	SMALL-LOSS	NONFOCAL	92	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ARHGEF35,ARHGEF5,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CTAGE4,CTAGE8,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOBOX,NOM1,NOS3,NUB1,OR2A1,OR2A14,OR2A2,OR2A42,OR2A7,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,TPK1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.RU.A8FL	7	146139905	152408080	1897	-0.5409	SMALL-LOSS	NONFOCAL	60	"ABCB8,ABCF2,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNTNAP2,CRYGN,CUL1,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,IQCA1L,KCNH2,KMT2C,KRBA1,LRRC61,NOS3,NUB1,PDIA4,PRKAG2,RARRES2,REPIN1,RHEB,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.A6.5661	7	147505752	158915081	3691	-0.5711	SMALL-LOSS	NONFOCAL	81	"ABCB8,ABCF2,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,C7orf33,CDK5,CHPF2,CNPY1,CNTNAP2,CRYGN,CUL1,DNAJB6,DPP6,EN2,ESYT2,EZH2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,INSIG1,IQCA1L,KCNH2,KMT2C,KRBA1,LMBR1,LOC389602,LRRC61,MNX1,NCAPG2,NOM1,NOS3,NUB1,PAXIP1,PDIA4,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,SSPO,TMEM176A,TMEM176B,TMUB1,UBE3C,VIPR2,WDR60,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF398,ZNF425,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF786,ZNF862"
TCGA.A6.3808.01A	7	149419481	150093553	115	-0.806	SMALL-LOSS	NONFOCAL	11	"ACTR3C,ATP6V0E2,KRBA1,LRRC61,RARRES2,REPIN1,SSPO,ZBED6CL,ZNF467,ZNF775,ZNF862"
TCGA.AA.A00N.01A	7	149530812	150217035	32	-0.6559	SMALL-LOSS	NONFOCAL	11	"ACTR3C,ATP6V0E2,GIMAP7,GIMAP8,LRRC61,RARRES2,REPIN1,SSPO,ZBED6CL,ZNF775,ZNF862"
TCGA.D5.5541	7	149967985	150755838	265	-1.0525	SMALL-LOSS	NONFOCAL	24	"ABCB8,ACTR3C,AOC1,ASIC3,ATG9B,CDK5,GIMAP1,GIMAP1-GIMAP5,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,KCNH2,LRRC61,NOS3,RARRES2,REPIN1,SLC4A2,TMEM176A,TMEM176B,ZBED6CL,ZNF775"
TCGA.A6.3808.01A	7	150692243	151074121	142	-0.9405	SMALL-LOSS	NONFOCAL	16	"ABCB8,ABCF2,AGAP3,ASB10,ASIC3,ATG9B,CDK5,CHPF2,FASTK,GBX1,IQCA1L,NOS3,NUB1,SLC4A2,SMARCD3,TMUB1"
TCGA.AG.A026	7	151803566	155586099	1357	-0.6595	SMALL-LOSS	NONFOCAL	11	"ACTR3B,CNPY1,DPP6,EN2,GALNT11,HTR5A,INSIG1,KMT2C,PAXIP1,RBM33,XRCC2"
TCGA.EI.6883	8	164983	6356156	4391	-0.7078	SMALL-LOSS	NONFOCAL	11	"ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,ZNF596"
TCGA.D5.6531	8	164983	6661687	4645	-1.0596	SMALL-LOSS	NONFOCAL	13	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,ZNF596"
TCGA.AD.6888	8	164983	8120342	4855	-0.8585	SMALL-LOSS	NONFOCAL	43	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,PRR23D1,PRR23D2,SPAG11A,SPAG11B,TDRP,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF596,ZNF705B,ZNF705G"
TCGA.CA.6715	8	164983	15754184	8547	-0.9156	SMALL-LOSS	NONFOCAL	80	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AZ.4614	8	164983	15784406	8475	-0.8474	SMALL-LOSS	NONFOCAL	80	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.CL.5917	8	164983	15944306	8678	-0.7412	SMALL-LOSS	NONFOCAL	80	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.D5.6922	8	164983	15951048	8687	-1.0202	SMALL-LOSS	NONFOCAL	80	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf48,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AF.2693	8	164983	18394991	9976	-0.5687	SMALL-LOSS	NONFOCAL	96	"AGPAT5,ANGPT2,ARHGEF10,ASAH1,BLK,C8orf48,C8orf74,CLDN23,CLN8,CNOT7,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,FGF20,FGL1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,MYOM2,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,PSD3,RP1L1,SGCZ,SGK223,SLC35G5,SLC7A2,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,TUSC3,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,VPS37A,XKR5,XKR6,ZDHHC2,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.G4.6586	8	164983	20109186	10891	-0.6106	SMALL-LOSS	NONFOCAL	103	Too-Many
TCGA.EI.6511	8	164983	20539111	11125	-0.5562	SMALL-LOSS	NONFOCAL	103	Too-Many
TCGA.DY.A1DD	8	164983	22046828	11796	-0.8903	SMALL-LOSS	NONFOCAL	116	Too-Many
TCGA.QG.A5Z1	8	164983	23110783	11987	-0.8593	SMALL-LOSS	NONFOCAL	134	Too-Many
TCGA.EI.7002	8	164983	23762004	12359	-1.2449	SMALL-LOSS	NONFOCAL	141	Too-Many
TCGA.DC.6157	8	164983	24135777	12338	-1.0185	SMALL-LOSS	NONFOCAL	141	Too-Many
TCGA.CM.5860	8	164983	26151801	13259	-0.9778	SMALL-LOSS	NONFOCAL	152	Too-Many
TCGA.A6.2677	8	164983	26886806	12534	-0.8791	SMALL-LOSS	NONFOCAL	156	Too-Many
TCGA.D5.6533	8	164983	28217975	14185	-0.7249	SMALL-LOSS	NONFOCAL	171	Too-Many
TCGA.AA.3667	8	164983	28227143	14241	-0.5514	SMALL-LOSS	NONFOCAL	171	Too-Many
TCGA.AH.6644	8	164983	28661762	14329	-0.874	SMALL-LOSS	NONFOCAL	175	Too-Many
TCGA.D5.6923	8	164983	28794677	14345	-0.5461	SMALL-LOSS	NONFOCAL	176	Too-Many
TCGA.AA.3870	8	164983	28841820	14381	-0.5313	SMALL-LOSS	NONFOCAL	176	Too-Many
TCGA.AG.A01Y	8	164983	28913887	14362	-0.826	SMALL-LOSS	NONFOCAL	176	Too-Many
TCGA.AG.3896	8	164983	28967876	14373	-0.5573	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.DY.A0XA	8	164983	29159472	14444	-0.7565	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.A6.6137	8	164983	29402039	14546	-0.5755	SMALL-LOSS	NONFOCAL	178	Too-Many
TCGA.DM.A28H	8	164983	30090934	14767	-0.6304	SMALL-LOSS	NONFOCAL	182	Too-Many
TCGA.AA.3867	8	164983	30165167	14799	-1.1169	SMALL-LOSS	NONFOCAL	182	Too-Many
TCGA.A6.5656	8	164983	30565883	14866	-0.7523	SMALL-LOSS	NONFOCAL	186	Too-Many
TCGA.G4.6295	8	164983	30715168	14946	-1.0598	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.AG.A026	8	164983	31252303	15107	-0.5866	SMALL-LOSS	NONFOCAL	191	Too-Many
TCGA.AA.3979	8	164983	31833922	15267	-1.054	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.G5.6233	8	164983	32139651	15475	-0.6355	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.AA.3529	8	164983	32217224	15506	-0.5518	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.G5.6641	8	164983	32218681	15494	-0.5395	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.CM.5344	8	164983	32717813	15729	-0.6882	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.F5.6813	8	164983	32757831	15730	-0.5373	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.A6.6648	8	164983	33380684	15910	-0.6895	SMALL-LOSS	NONFOCAL	195	Too-Many
TCGA.F5.6702	8	164983	33443075	15871	-0.6134	SMALL-LOSS	NONFOCAL	196	Too-Many
TCGA.DC.6683	8	164983	33471272	15895	-0.9059	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.F4.6854	8	164983	33484844	15896	-0.5479	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.DM.A285	8	164983	33701437	15939	-0.6151	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.EF.5830	8	164983	33964092	15991	-0.7672	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.5M.AATA	8	164983	34139601	16072	-0.6859	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.F5.6864	8	164983	34172859	16070	-0.5572	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AA.3860	8	164983	34186053	16104	-0.6653	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AF.6655	8	164983	34310785	16099	-0.5445	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AY.5543	8	164983	34348001	16017	-0.6344	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AA.3975	8	164983	34353810	16136	-0.7965	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AA.3971	8	164983	34392456	16154	-0.5151	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AA.A01S	8	164983	34392456	16156	-0.97065	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.DT.5265	8	164983	34548367	16183	-0.5358	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.DY.A1DC	8	164983	34629900	16201	-0.6734	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AG.3591	8	164983	34808775	16275	-0.7568	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.A6.6652	8	164983	34893700	16280	-0.7984	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.A6.6650	8	164983	34925901	14956	-0.5734	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.DC.4745	8	164983	35041360	16350	-0.8765	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AZ.4308	8	164983	35099764	16337	-0.6617	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.AA.3660	8	164983	35184936	16365	-0.7286	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.CM.6169	8	164983	35229397	16273	-0.5458	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.CM.6163	8	164983	35362477	16328	-0.6116	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.CA.5797	8	164983	35467286	16417	-0.9856	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.AG.4008	8	164983	35798547	16388	-0.5384	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.A6.3807	8	164983	36163857	16476	-0.585	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.A6.6140	8	164983	36447400	16606	-0.7289	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.AA.3685	8	164983	36662679	16654	-0.7832	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AD.6899	8	164983	36716958	16607	-0.6131	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AA.3496	8	164983	36752563	16609	-0.705	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.NH.A6GB	8	164983	36789732	16659	-0.708	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.NH.A50V	8	164983	36858482	16575	-0.6095	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.D5.6535	8	164983	36882517	16695	-1.0027	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AG.3584	8	164983	36926080	16719	-0.6826	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.EI.6513	8	164983	37048589	16776	-0.8191	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.CL.4957	8	164983	37211457	16852	-1.038	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AA.3556	8	164983	37336362	16846	-0.8032	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AA.3697	8	164983	37340148	16874	-0.8376	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AA.A01Z	8	164983	37438821	16899	-0.8692	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AF.A56L	8	164983	37487104	16880	-0.5557	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.NH.A6GA	8	164983	37515476	16914	-0.7097	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.DC.6155	8	164983	37610505	16860	-1.0272	SMALL-LOSS	NONFOCAL	201	Too-Many
TCGA.DM.A0XF	8	164983	37610505	16937	-0.5465	SMALL-LOSS	NONFOCAL	201	Too-Many
TCGA.CA.6719	8	164983	37716301	16898	-0.9288	SMALL-LOSS	NONFOCAL	204	Too-Many
TCGA.A6.2675	8	164983	37805391	16854	-0.7179	SMALL-LOSS	NONFOCAL	206	Too-Many
TCGA.AA.3679	8	164983	37834311	16961	-0.7572	SMALL-LOSS	NONFOCAL	207	Too-Many
TCGA.AA.3688	8	164983	37834311	16966	-0.8258	SMALL-LOSS	NONFOCAL	207	Too-Many
TCGA.CM.4752	8	164983	37974493	16936	-0.7272	SMALL-LOSS	NONFOCAL	209	Too-Many
TCGA.AG.3732	8	164983	37992514	16914	-0.5694	SMALL-LOSS	NONFOCAL	209	Too-Many
TCGA.DC.6158	8	164983	38043757	16924	-0.7734	SMALL-LOSS	NONFOCAL	212	Too-Many
TCGA.AF.3911	8	164983	38133792	16987	-1.3	SMALL-LOSS	NONFOCAL	215	Too-Many
TCGA.CM.6170	8	164983	38329942	16988	-0.7261	SMALL-LOSS	NONFOCAL	217	Too-Many
TCGA.AG.4021	8	164983	38782626	17104	-0.7549	SMALL-LOSS	NONFOCAL	220	Too-Many
TCGA.DM.A1D0	8	164983	38840590	17042	-0.8252	SMALL-LOSS	NONFOCAL	221	Too-Many
TCGA.AA.3666	8	164983	38911809	17146	-1.2594	SMALL-LOSS	NONFOCAL	223	Too-Many
TCGA.AF.3913	8	164983	39584167	17164	-0.7203	SMALL-LOSS	NONFOCAL	225	Too-Many
TCGA.G4.6299	8	164983	39636320	17245	-0.5255	SMALL-LOSS	NONFOCAL	226	Too-Many
TCGA.A6.A56B	8	164983	39961272	17258	-1.1993	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.A6.A567	8	164983	39995359	17249	-0.7856	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.AG.3727	8	164983	40126360	17456	-0.8094	SMALL-LOSS	NONFOCAL	229	Too-Many
TCGA.NH.A8F8	8	164983	40262247	17521	-0.6222	SMALL-LOSS	NONFOCAL	229	Too-Many
TCGA.AA.3692	8	164983	40573687	17679	-0.7346	SMALL-LOSS	NONFOCAL	230	Too-Many
TCGA.A6.2680	8	164983	40684559	17683	-0.5757	SMALL-LOSS	NONFOCAL	230	Too-Many
TCGA.AA.3544	8	164983	41081637	17844	-0.7555	SMALL-LOSS	NONFOCAL	230	Too-Many
TCGA.5M.AAT5	8	164983	41234888	17875	-0.7714	SMALL-LOSS	NONFOCAL	231	Too-Many
TCGA.G4.6306	8	164983	41362567	17912	-0.7099	SMALL-LOSS	NONFOCAL	232	Too-Many
TCGA.AD.6901	8	164983	41614714	17952	-0.7612	SMALL-LOSS	NONFOCAL	236	Too-Many
TCGA.AZ.6603	8	164983	42425398	18130	-0.7022	SMALL-LOSS	NONFOCAL	245	Too-Many
TCGA.A6.2683	8	164983	42898470	18215	-0.6335	SMALL-LOSS	NONFOCAL	250	Too-Many
TCGA.DM.A28A	8	164983	43679529	18256	-0.82	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.4N.A93T	8	164983	43778913	18294	-0.8236	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.AD.6965	8	164983	43778913	18256	-0.7627	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.AG.3726	8	164983	43778913	18295	-0.7055	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.D5.5538	8	164983	43778913	18272	-0.6086	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.DM.A28F	8	164983	43778913	18256	-0.6051	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.G4.6314	8	164983	43778913	18290	-0.7861	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.G4.6317	8	164983	43778913	18284	-0.7887	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.AG.3742	8	164983	46924210	18159	-0.692	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.A6.2678	8	164983	60035522	21858	-0.6778	SMALL-LOSS	NONFOCAL	294	Too-Many
TCGA.DM.A1D6	8	164983	127631616	40854	-0.8316	SMALL-LOSS	NONFOCAL	537	Too-Many
TCGA.CK.4952.01A	8	180805	7183003	223	-0.8073	SMALL-LOSS	NONFOCAL	21	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP,XKR5,ZNF596"
TCGA.AG.A036.01A	8	180814	32525736	1582	-0.6964	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.AA.A02F.01A	8	190805	7698579	211	-0.8213	SMALL-LOSS	NONFOCAL	38	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,PRR23D1,PRR23D2,SPAG11B,TDRP,USP17L1,USP17L4,XKR5,ZNF596,ZNF705G"
TCGA.AG.A02G.01A	8	190805	8185199	229	-0.8585	SMALL-LOSS	NONFOCAL	44	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,TDRP,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF596,ZNF705B,ZNF705G"
TCGA.AA.3509.01A	8	190805	13251032	418	-0.6782	SMALL-LOSS	NONFOCAL	77	"AGPAT5,ANGPT2,ARHGEF10,BLK,C8orf74,CLDN23,CLN8,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,DLGAP2,ERI1,ERICH1,FAM167A,FAM86B1,FAM86B2,FBXO25,FDFT1,GATA4,KBTBD11,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,MYOM2,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TDRP,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF596,ZNF705B,ZNF705D,ZNF705G"
TCGA.AA.A02E.01A	8	190805	23113921	887	-0.6054	SMALL-LOSS	NONFOCAL	134	Too-Many
TCGA.AA.A02W.01A	8	190805	28208963	1262	-0.9068	SMALL-LOSS	NONFOCAL	171	Too-Many
TCGA.AG.A014.01A	8	190805	35616816	1517	-0.5227	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.AG.A01N.01A	8	190805	35647840	1532	-0.9111	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.AG.A00Y.01A	8	190805	39840142	1868	-0.5737	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.AA.A02K.01A	8	190814	36792986	1667	-0.7176	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AF.6672	8	291856	28308593	14156	-1.0284	SMALL-LOSS	NONFOCAL	171	Too-Many
TCGA.CM.5862	8	335645	33272420	15749	-1.1023	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.AA.3862.01A	8	399940	6588191	187	-1.0088	SMALL-LOSS	NONFOCAL	12	"AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DLGAP2,ERICH1,FBXO25,KBTBD11,MCPH1,MYOM2,TDRP"
TCGA.DC.6682	8	901236	28568904	14015	-0.8943	SMALL-LOSS	NONFOCAL	170	Too-Many
TCGA.AG.3893	8	916163	35831045	16090	-0.5575	SMALL-LOSS	NONFOCAL	194	Too-Many
TCGA.G4.6303	8	1518670	35831045	15919	-1.0603	SMALL-LOSS	NONFOCAL	194	Too-Many
TCGA.AZ.5403	8	1802267	7011074	4151	-0.5591	SMALL-LOSS	NONFOCAL	15	"AGPAT5,ANGPT2,ARHGEF10,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,KBTBD11,MCPH1,MYOM2,XKR5"
TCGA.AG.A02X.01A	8	1881915	22102416	719	-1.0108	SMALL-LOSS	NONFOCAL	111	Too-Many
TCGA.AA.A02J.01A	8	2021372	37597824	1422	-0.6484	SMALL-LOSS	NONFOCAL	193	Too-Many
TCGA.CM.6675	8	2142266	33235361	14914	-1.0618	SMALL-LOSS	NONFOCAL	184	Too-Many
TCGA.AA.3548	8	2220775	32910016	14856	-0.702	SMALL-LOSS	NONFOCAL	183	Too-Many
TCGA.AG.3594	8	2220775	32998984	14881	-0.6149	SMALL-LOSS	NONFOCAL	183	Too-Many
TCGA.AA.3549	8	2220775	34372292	15229	-0.7034	SMALL-LOSS	NONFOCAL	188	Too-Many
TCGA.AA.3494	8	2220775	40580637	16736	-1.208	SMALL-LOSS	NONFOCAL	221	Too-Many
TCGA.AZ.6606	8	2220775	41445508	16950	-0.7254	SMALL-LOSS	NONFOCAL	225	Too-Many
TCGA.AA.3488	8	2247093	39576842	16277	-1.3119	SMALL-LOSS	NONFOCAL	216	Too-Many
TCGA.AA.3560	8	2247093	40673463	16773	-1.2051	SMALL-LOSS	NONFOCAL	221	Too-Many
TCGA.CM.5868	8	2270327	25317690	11991	-0.8355	SMALL-LOSS	NONFOCAL	141	Too-Many
TCGA.CK.5912	8	2272425	29436336	13577	-0.8728	SMALL-LOSS	NONFOCAL	169	Too-Many
TCGA.AA.3543	8	3589280	11934659	4950	-0.9305	SMALL-LOSS	NONFOCAL	60	"AGPAT5,ANGPT2,BLK,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,ERI1,FAM167A,FDFT1,GATA4,LOC100133267,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,XKR6,ZNF705B,ZNF705G"
TCGA.DM.A1HA	8	3791217	68019207	21770	-0.9594	SMALL-LOSS	NONFOCAL	315	Too-Many
TCGA.AZ.4681	8	3935770	38133792	14694	-0.8621	SMALL-LOSS	NONFOCAL	206	Too-Many
TCGA.RU.A8FL	8	4003560	38133792	14609	-1.2444	SMALL-LOSS	NONFOCAL	206	Too-Many
TCGA.AA.3952	8	4284691	13280397	4575	-0.6513	SMALL-LOSS	NONFOCAL	68	"AGPAT5,ANGPT2,BLK,C8orf74,CLDN23,CSMD1,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,KIAA1456,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.A6.5662	8	4827121	34149464	12921	-0.9903	SMALL-LOSS	NONFOCAL	188	Too-Many
TCGA.CM.6172	8	4936249	33195721	12638	-0.6918	SMALL-LOSS	NONFOCAL	182	Too-Many
TCGA.AG.3592	8	5306138	22955306	8562	-1.3172	SMALL-LOSS	NONFOCAL	120	Too-Many
TCGA.D5.5541	8	5573696	33417257	12171	-0.7902	SMALL-LOSS	NONFOCAL	186	Too-Many
TCGA.DM.A28G	8	5604326	41028700	14039	-0.8021	SMALL-LOSS	NONFOCAL	220	Too-Many
TCGA.F5.6571	8	5604494	33260716	12102	-0.6328	SMALL-LOSS	NONFOCAL	183	Too-Many
TCGA.DM.A1D9	8	5604494	43409350	14514	-0.7414	SMALL-LOSS	NONFOCAL	244	Too-Many
TCGA.CM.6166	8	5735747	33748816	12141	-0.6985	SMALL-LOSS	NONFOCAL	187	Too-Many
TCGA.AA.3680	8	5904397	8087143	837	-0.7361	SMALL-LOSS	NONFOCAL	33	"AGPAT5,ANGPT2,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,MCPH1,PRR23D1,PRR23D2,SPAG11A,SPAG11B,USP17L1,USP17L3,USP17L4,USP17L8,XKR5,ZNF705B,ZNF705G"
TCGA.A6.5659	8	6438314	37828953	11472	-1.0566	SMALL-LOSS	NONFOCAL	196	Too-Many
TCGA.EI.6883	8	6476625	12693100	2389	-0.6654	SMALL-LOSS	NONFOCAL	64	"AGPAT5,BLK,C8orf74,CLDN23,CTSB,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DEFB4B,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,GATA4,LOC100133267,LONRF1,MCPH1,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRR23D1,PRR23D2,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L2,USP17L3,USP17L4,USP17L7,USP17L8,XKR5,XKR6,ZNF705B,ZNF705D,ZNF705G"
TCGA.A6.3808.01A	8	6590030	7343784	30	-0.9892	SMALL-LOSS	NONFOCAL	20	"AGPAT5,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB106A,DEFB106B,DEFB4B,SPAG11B,USP17L1,USP17L4,XKR5,ZNF705G"
TCGA.D5.5540	8	6879802	9844383	980	-0.7931	SMALL-LOSS	NONFOCAL	29	"CLDN23,DEFA5,DEFB103A,DEFB103B,DEFB104A,DEFB104B,DEFB105A,DEFB105B,DEFB106A,DEFB106B,DEFB107A,DEFB107B,DEFB4A,DEFB4B,ERI1,MFHAS1,PPP1R3B,PRR23D1,PRR23D2,SGK223,SPAG11A,SPAG11B,TNKS,USP17L1,USP17L3,USP17L4,USP17L8,ZNF705B,ZNF705G"
TCGA.DM.A1DB	8	6935819	34420001	11335	-0.7381	SMALL-LOSS	NONFOCAL	176	Too-Many
TCGA.AA.3862.01A	8	7718107	31001006	1325	-0.8421	SMALL-LOSS	NONFOCAL	155	Too-Many
TCGA.CK.4952.01A	8	7743574	17959271	355	-0.7967	SMALL-LOSS	NONFOCAL	54	"ASAH1,BLK,C8orf48,C8orf74,CLDN23,CNOT7,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DEFB4A,DLC1,ERI1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,FGL1,GATA4,KIAA1456,LOC100133267,LONRF1,MFHAS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRSS55,RP1L1,SGCZ,SGK223,SLC35G5,SLC7A2,SOX7,TNKS,TUSC3,USP17L2,USP17L3,USP17L7,USP17L8,VPS37A,XKR6,ZDHHC2,ZNF705B,ZNF705D"
TCGA.AA.3848	8	8087143	11310011	1754	-0.7572	SMALL-LOSS	NONFOCAL	16	"C8orf74,CLDN23,ERI1,FAM167A,MFHAS1,MSRA,MTMR9,PINX1,PPP1R3B,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,TNKS,XKR6"
TCGA.AG.A02G.01A	8	8196943	33454772	1277	-1.1464	SMALL-LOSS	NONFOCAL	154	Too-Many
TCGA.AG.3909.01A	8	8233751	11702617	122	-0.6847	SMALL-LOSS	NONFOCAL	21	"BLK,C8orf74,CLDN23,CTSB,ERI1,FAM167A,FDFT1,GATA4,MFHAS1,MSRA,MTMR9,NEIL2,PINX1,PPP1R3B,PRSS55,RP1L1,SGK223,SLC35G5,SOX7,TNKS,XKR6"
TCGA.AG.3611.01A	8	8643451	33454772	1072	-1.3208	SMALL-LOSS	NONFOCAL	152	Too-Many
TCGA.AZ.5403	8	8812301	31276364	9870	-0.5651	SMALL-LOSS	NONFOCAL	145	Too-Many
TCGA.AA.3680	8	8975952	20382867	5697	-0.7117	SMALL-LOSS	NONFOCAL	56	"ASAH1,ATP6V1B2,BLK,C8orf48,C8orf74,CNOT7,CSGALNACT1,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,FGL1,GATA4,INTS10,KIAA1456,LOC100133267,LONRF1,LPL,LZTS1,MICU3,MSR1,MSRA,MTMR7,MTMR9,MTUS1,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PINX1,PPP1R3B,PRSS55,PSD3,RP1L1,SGCZ,SH2D4A,SLC18A1,SLC35G5,SLC7A2,SOX7,TNKS,TUSC3,USP17L2,USP17L7,VPS37A,XKR6,ZDHHC2,ZNF705D"
TCGA.AA.A00F.01A	8	9562139	17092176	165	-0.5871	SMALL-LOSS	NONFOCAL	37	"BLK,C8orf48,C8orf74,CNOT7,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,GATA4,KIAA1456,LOC100133267,LONRF1,MICU3,MSR1,MSRA,MTMR9,NEIL2,PINX1,PRSS55,RP1L1,SGCZ,SLC35G5,SOX7,TNKS,TUSC3,USP17L2,USP17L7,XKR6,ZDHHC2,ZNF705D"
TCGA.AA.3972	8	10949769	11877194	433	-0.7787	SMALL-LOSS	NONFOCAL	12	"BLK,CTSB,DEFB134,DEFB135,DEFB136,FAM167A,FDFT1,GATA4,MTMR9,NEIL2,SLC35G5,XKR6"
TCGA.AZ.4682	8	11072548	28813777	7918	-0.7668	SMALL-LOSS	NONFOCAL	120	Too-Many
TCGA.AG.4009.01A	8	11281835	20035888	326	-0.5347	SMALL-LOSS	NONFOCAL	43	"ASAH1,BLK,C8orf48,CNOT7,CSGALNACT1,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,DLC1,FAM167A,FAM86B1,FAM86B2,FDFT1,FGF20,FGL1,GATA4,INTS10,KIAA1456,LOC100133267,LONRF1,LPL,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NEIL2,PCM1,PDGFRL,PSD3,SGCZ,SH2D4A,SLC18A1,SLC7A2,TUSC3,USP17L2,USP17L7,VPS37A,ZDHHC2,ZNF705D"
TCGA.D5.5540	8	11768603	41550786	11162	-0.8461	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.G4.6322	8	11877194	14580167	1161	-0.5212	SMALL-LOSS	NONFOCAL	12	"C8orf48,DEFB130,DLC1,FAM86B1,FAM86B2,KIAA1456,LOC100133267,LONRF1,SGCZ,USP17L2,USP17L7,ZNF705D"
TCGA.AA.3848	8	11877194	35229397	9537	-0.7707	SMALL-LOSS	NONFOCAL	131	Too-Many
TCGA.AM.5820	8	12473557	22416328	5004	-0.7638	SMALL-LOSS	NONFOCAL	48	"ASAH1,ATP6V1B2,BMP1,C8orf48,CNOT7,CSGALNACT1,DLC1,DMTN,DOK2,FAM160B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,KIAA1456,LGI3,LONRF1,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NPM2,NUDT18,PCM1,PDGFRL,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,REEP4,SFTPC,SGCZ,SH2D4A,SLC18A1,SLC39A14,SLC7A2,SORBS3,TUSC3,VPS37A,XPO7,ZDHHC2"
TCGA.AY.A71X	8	12917219	23164772	5021	-0.9888	SMALL-LOSS	NONFOCAL	60	"ASAH1,ATP6V1B2,BIN3,BMP1,C8orf48,C8orf58,CCAR2,CHMP7,CNOT7,CSGALNACT1,DLC1,DMTN,DOK2,EGR3,FAM160B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SGCZ,SH2D4A,SLC18A1,SLC39A14,SLC7A2,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TUSC3,VPS37A,XPO7,ZDHHC2"
TCGA.F4.6459	8	13391638	25090068	5512	-0.5396	SMALL-LOSS	NONFOCAL	70	"ADAM28,ADAM7,ADAMDEC1,ASAH1,ATP6V1B2,BIN3,BMP1,C8orf48,C8orf58,CCAR2,CHMP7,CNOT7,CSGALNACT1,DMTN,DOCK5,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SGCZ,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TUSC3,VPS37A,XPO7,ZDHHC2"
TCGA.AA.3664	8	13526284	28568904	6904	-0.781	SMALL-LOSS	NONFOCAL	96	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,ASAH1,ATP6V1B2,BIN3,BMP1,BNIP3L,C8orf58,CCAR2,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,CNOT7,CSGALNACT1,DMTN,DOCK5,DOK2,DPYSL2,EBF2,EGR3,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FAM160B2,FBXO16,FGF17,FGF20,FGL1,FZD3,GFRA2,GNRH1,HR,INTS10,KCTD9,LGI3,LOXL2,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NUDT18,NUGGC,PBK,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,PNMA2,PNOC,POLR3D,PPP2R2A,PPP3CC,PSD3,PTK2B,R3HCC1,REEP4,RHOBTB2,SCARA3,SCARA5,SFTPC,SGCZ,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,STC1,STMN4,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,TUSC3,VPS37A,XPO7,ZDHHC2,ZNF395"
TCGA.AG.3602	8	13610493	35916717	9011	-0.7014	SMALL-LOSS	NONFOCAL	120	Too-Many
TCGA.AA.A00L.01A	8	14710882	22477076	355	-0.6197	SMALL-LOSS	NONFOCAL	47	"ASAH1,ATP6V1B2,BMP1,C8orf58,CCAR2,CNOT7,CSGALNACT1,DMTN,DOK2,FAM160B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,LGI3,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,REEP4,SFTPC,SGCZ,SH2D4A,SLC18A1,SLC39A14,SLC7A2,SORBS3,TUSC3,VPS37A,XPO7,ZDHHC2"
TCGA.G4.6626	8	14828891	33228198	7781	-0.9427	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.D5.5539	8	15337888	23370695	3832	-0.9758	SMALL-LOSS	NONFOCAL	58	"ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CHMP7,CNOT7,CSGALNACT1,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,FGF20,FGL1,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC39A14,SLC7A2,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TUSC3,VPS37A,XPO7,ZDHHC2"
TCGA.AA.3952	8	15571186	18849507	1816	-0.6091	SMALL-LOSS	NONFOCAL	17	"ASAH1,CNOT7,FGF20,FGL1,MICU3,MSR1,MTMR7,MTUS1,NAT1,NAT2,PCM1,PDGFRL,PSD3,SLC7A2,TUSC3,VPS37A,ZDHHC2"
TCGA.EI.6883	8	15788268	33154178	7239	-0.661	SMALL-LOSS	NONFOCAL	112	Too-Many
TCGA.AZ.4614	8	15788268	36554204	7940	-0.8273	SMALL-LOSS	NONFOCAL	118	Too-Many
TCGA.D5.6922	8	16000749	39397731	8437	-1.0068	SMALL-LOSS	NONFOCAL	144	Too-Many
TCGA.CL.5917	8	16010731	35174827	7605	-0.7247	SMALL-LOSS	NONFOCAL	118	Too-Many
TCGA.AA.3509.01A	8	17143799	24170860	537	-0.6695	SMALL-LOSS	NONFOCAL	57	"ADAM28,ASAH1,ATP6V1B2,BIN3,BMP1,C8orf58,CCAR2,CHMP7,CSGALNACT1,DMTN,DOK2,EGR3,ENTPD4,FAM160B2,FGF17,FGL1,GFRA2,HR,INTS10,LGI3,LOXL2,LPL,LZTS1,MTMR7,MTUS1,NAT1,NAT2,NKX2-6,NKX3-1,NPM2,NUDT18,PCM1,PDGFRL,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SLC7A2,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,VPS37A,XPO7"
TCGA.CK.4952.01A	8	17985712	26283520	610	-0.7945	SMALL-LOSS	NONFOCAL	60	"ADAM28,ADAM7,ADAMDEC1,ATP6V1B2,BIN3,BMP1,BNIP3L,C8orf58,CCAR2,CDCA2,CHMP7,CSGALNACT1,DMTN,DOCK5,DOK2,EBF2,EGR3,ENTPD4,FAM160B2,FGF17,GFRA2,GNRH1,HR,INTS10,KCTD9,LGI3,LOXL2,LPL,LZTS1,NAT1,NAT2,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NUDT18,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP2R2A,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,XPO7"
TCGA.AF.2693	8	18406526	39298835	7203	-0.5655	SMALL-LOSS	NONFOCAL	129	Too-Many
TCGA.CA.6715	8	18443285	26351777	3331	-0.8897	SMALL-LOSS	NONFOCAL	58	"ADAM28,ADAM7,ADAMDEC1,ATP6V1B2,BIN3,BMP1,BNIP3L,C8orf58,CCAR2,CDCA2,CHMP7,CSGALNACT1,DMTN,DOCK5,DOK2,EBF2,EGR3,ENTPD4,FAM160B2,FGF17,GFRA2,GNRH1,HR,INTS10,KCTD9,LGI3,LOXL2,LPL,LZTS1,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NUDT18,PDLIM2,PEBP4,PHYHIP,PIWIL2,POLR3D,PPP2R2A,PPP3CC,PSD3,R3HCC1,REEP4,RHOBTB2,SFTPC,SH2D4A,SLC18A1,SLC25A37,SLC39A14,SORBS3,STC1,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,XPO7"
TCGA.AA.3952	8	18866226	33686300	5716	-0.624	SMALL-LOSS	NONFOCAL	102	Too-Many
TCGA.D5.6932	8	21341743	36222872	4978	-0.6595	SMALL-LOSS	NONFOCAL	95	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BIN3,BMP1,BNIP3L,C8orf58,CCAR2,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DMTN,DOCK5,DOK2,DPYSL2,DUSP26,DUSP4,EBF2,EGR3,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FAM160B2,FBXO16,FGF17,FUT10,FZD3,GFRA2,GNRH1,GSR,GTF2E2,HMBOX1,HR,INTS9,KCTD9,KIF13B,LEPROTL1,LGI3,LOXL2,MAK16,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NPM2,NRG1,NUDT18,NUGGC,PBK,PDLIM2,PEBP4,PHYHIP,PIWIL2,PNMA2,PNOC,POLR3D,PPP2CB,PPP2R2A,PPP3CC,PTK2B,PURG,R3HCC1,RBPMS,REEP4,RHOBTB2,RNF122,SARAF,SCARA3,SCARA5,SFTPC,SLC25A37,SLC39A14,SMIM18,SORBS3,STC1,STMN4,TEX15,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,TTI2,UBXN8,UNC5D,WRN,XPO7,ZNF395"
TCGA.A6.3808.01A	8	21849332	22022902	78	-0.686	SMALL-LOSS	NONFOCAL	11	"BMP1,DMTN,FAM160B2,FGF17,HR,LGI3,NPM2,NUDT18,REEP4,SFTPC,XPO7"
TCGA.CK.5914.01A	8	21856211	22147303	114	-0.5529	SMALL-LOSS	NONFOCAL	14	"BMP1,DMTN,FAM160B2,FGF17,HR,LGI3,NPM2,NUDT18,PHYHIP,PIWIL2,POLR3D,REEP4,SFTPC,XPO7"
TCGA.AG.4009.01A	8	21860681	22037844	69	-1.1759	SMALL-LOSS	NONFOCAL	11	"BMP1,DMTN,FAM160B2,FGF17,HR,LGI3,NPM2,NUDT18,REEP4,SFTPC,XPO7"
TCGA.AG.A02X.01A	8	22107540	35647840	755	-0.9954	SMALL-LOSS	NONFOCAL	81	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BIN3,BNIP3L,C8orf58,CCAR2,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,EGR3,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,LOXL2,MAK16,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PDLIM2,PEBP4,PIWIL2,PNMA2,PNOC,POLR3D,PPP2CB,PPP2R2A,PPP3CC,PTK2B,PURG,R3HCC1,RBPMS,RHOBTB2,RNF122,SARAF,SCARA3,SCARA5,SLC25A37,SLC39A14,SMIM18,SORBS3,STC1,STMN4,TEX15,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,TTI2,UBXN8,UNC5D,WRN,ZNF395"
TCGA.AG.3909.01A	8	22140500	23104161	132	-0.6116	SMALL-LOSS	NONFOCAL	16	"BIN3,C8orf58,CCAR2,CHMP7,EGR3,PDLIM2,PEBP4,PIWIL2,PPP3CC,RHOBTB2,SLC39A14,SORBS3,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D"
TCGA.AM.5820	8	22647849	38260814	5048	-0.7296	SMALL-LOSS	NONFOCAL	89	"ADAM28,ADAM7,ADAMDEC1,ADGRA2,ADRA1A,ADRB3,ASH2L,BAG4,BNIP3L,BRF2,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DDHD2,DOCK5,DPYSL2,DUSP26,DUSP4,EBF2,EIF4EBP1,ELP3,ENTPD4,EPHX2,ERLIN2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GNRH1,GOT1L1,GSR,GTF2E2,HMBOX1,INTS9,KCNU1,KCTD9,KIF13B,LEPROTL1,LETM2,LOXL2,LSM1,MAK16,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PEBP4,PNMA2,PNOC,PPAPDC1B,PPP2CB,PPP2R2A,PROSC,PTK2B,PURG,R3HCC1,RAB11FIP1,RBPMS,RHOBTB2,RNF122,SARAF,SCARA3,SCARA5,SLC25A37,SMIM18,STAR,STC1,STMN4,TEX15,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,TTI2,UBXN8,UNC5D,WHSC1L1,WRN,ZNF395,ZNF703"
TCGA.AA.A00L.01A	8	22872160	32607044	550	-0.5703	SMALL-LOSS	NONFOCAL	64	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BNIP3L,CCDC25,CDCA2,CHMP7,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,ENTPD4,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,LOXL2,MBOAT4,NEFL,NEFM,NKX2-6,NKX3-1,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,R3HCC1,RBPMS,RHOBTB2,SARAF,SCARA3,SCARA5,SLC25A37,SMIM18,STC1,STMN4,TEX15,TNFRSF10A,TNFRSF10B,TNFRSF10C,TNFRSF10D,TRIM35,UBXN8,WRN,ZNF395"
TCGA.AA.A02E.01A	8	23155499	41556922	974	-0.6204	SMALL-LOSS	NONFOCAL	101	Too-Many
TCGA.EI.7002	8	23767866	43762680	5904	-0.7569	SMALL-LOSS	NONFOCAL	113	Too-Many
TCGA.EI.6511	8	23913179	28294438	1835	-0.5455	SMALL-LOSS	NONFOCAL	31	"ADAM28,ADAM7,ADAMDEC1,ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DOCK5,DPYSL2,EBF2,ELP3,EPHX2,ESCO2,FBXO16,GNRH1,KCTD9,NEFL,NEFM,NUGGC,PBK,PNMA2,PNOC,PPP2R2A,PTK2B,SCARA3,SCARA5,STMN4,TRIM35,ZNF395"
TCGA.AA.3509.01A	8	24339608	29940311	410	-0.6702	SMALL-LOSS	NONFOCAL	36	"ADAM7,ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GNRH1,HMBOX1,INTS9,KCTD9,KIF13B,NEFL,NEFM,NUGGC,PBK,PNMA2,PNOC,PPP2R2A,PTK2B,SARAF,SCARA3,SCARA5,STMN4,TRIM35,ZNF395"
TCGA.DC.6157	8	24454981	31743432	2664	-1.0163	SMALL-LOSS	NONFOCAL	48	"ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,MBOAT4,NEFL,NEFM,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,UBXN8,WRN,ZNF395"
TCGA.AA.A00F.01A	8	25101153	33310702	408	-0.6233	SMALL-LOSS	NONFOCAL	47	"ADRA1A,BNIP3L,CCDC25,CDCA2,CHRNA2,CLU,DCTN6,DOCK5,DPYSL2,DUSP4,EBF2,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FUT10,FZD3,GNRH1,GSR,GTF2E2,HMBOX1,INTS9,KCTD9,KIF13B,LEPROTL1,MBOAT4,NRG1,NUGGC,PBK,PNMA2,PNOC,PPP2CB,PPP2R2A,PTK2B,PURG,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,UBXN8,WRN,ZNF395"
TCGA.CM.5860	8	26462160	31789450	1896	-0.9482	SMALL-LOSS	NONFOCAL	38	"ADRA1A,CCDC25,CHRNA2,CLU,DCTN6,DPYSL2,DUSP4,ELP3,EPHX2,ESCO2,EXTL3,FBXO16,FZD3,GSR,GTF2E2,HMBOX1,INTS9,KIF13B,LEPROTL1,MBOAT4,NRG1,NUGGC,PBK,PNOC,PPP2CB,PTK2B,PURG,RBPMS,SARAF,SCARA3,SCARA5,SMIM18,STMN4,TEX15,TRIM35,UBXN8,WRN,ZNF395"
TCGA.DY.A1DD	8	27174860	28442097	579	-0.922	SMALL-LOSS	NONFOCAL	15	"CCDC25,CHRNA2,CLU,ELP3,EPHX2,ESCO2,FBXO16,FZD3,NUGGC,PBK,PNOC,PTK2B,SCARA3,SCARA5,ZNF395"
TCGA.AA.A02W.01A	8	28214148	39133278	501	-0.9265	SMALL-LOSS	NONFOCAL	54	"ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DCTN6,DDHD2,DUSP26,DUSP4,EIF4EBP1,ERLIN2,EXTL3,FBXO16,FGFR1,FUT10,FZD3,GOT1L1,GSR,GTF2E2,HMBOX1,HTRA4,INTS9,KCNU1,KIF13B,LEPROTL1,LETM2,LSM1,MAK16,MBOAT4,NRG1,PLEKHA2,PPAPDC1B,PPP2CB,PROSC,PURG,RAB11FIP1,RBPMS,RNF122,SARAF,SMIM18,STAR,TACC1,TEX15,TM2D2,TTI2,UBXN8,UNC5D,WHSC1L1,WRN,ZNF395,ZNF703"
TCGA.AA.3867	8	30172266	35347737	1586	-0.5817	SMALL-LOSS	NONFOCAL	16	"DUSP26,FUT10,GSR,GTF2E2,MAK16,NRG1,PPP2CB,PURG,RBPMS,RNF122,SMIM18,TEX15,TTI2,UBXN8,UNC5D,WRN"
TCGA.CK.5912	8	30326208	36294500	1703	-0.8488	SMALL-LOSS	NONFOCAL	16	"DUSP26,FUT10,GSR,GTF2E2,MAK16,NRG1,PPP2CB,PURG,RBPMS,RNF122,SMIM18,TEX15,TTI2,UBXN8,UNC5D,WRN"
TCGA.G4.6295	8	30816026	39628689	2268	-1.0663	SMALL-LOSS	NONFOCAL	37	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,MAK16,NRG1,PLEKHA2,PPAPDC1B,PROSC,PURG,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,WRN,ZNF703"
TCGA.A6.5656	8	30879206	37834311	1951	-0.7304	SMALL-LOSS	NONFOCAL	18	"ADGRA2,ADRB3,BRF2,DUSP26,ERLIN2,FUT10,GOT1L1,KCNU1,MAK16,NRG1,PROSC,PURG,RAB11FIP1,RNF122,TTI2,UNC5D,WRN,ZNF703"
TCGA.AG.A026	8	32842923	40203790	1721	-0.5906	SMALL-LOSS	NONFOCAL	37	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,DUSP26,EIF4EBP1,ERLIN2,FGFR1,FUT10,GOT1L1,HTRA4,IDO1,IDO2,KCNU1,LETM2,LSM1,MAK16,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,RNF122,STAR,TACC1,TM2D2,TTI2,UNC5D,WHSC1L1,ZNF703"
TCGA.AA.3529	8	33923459	37974493	952	-0.5173	SMALL-LOSS	NONFOCAL	12	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,KCNU1,PROSC,RAB11FIP1,UNC5D,ZNF703"
TCGA.A6.2671	8	34929286	38888950	825	-0.693	SMALL-LOSS	NONFOCAL	26	"ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,KCNU1,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,UNC5D,WHSC1L1,ZNF703"
TCGA.AG.A02G.01A	8	35401936	38005670	112	-0.6338	SMALL-LOSS	NONFOCAL	13	"ADGRA2,ADRB3,ASH2L,BRF2,EIF4EBP1,ERLIN2,GOT1L1,KCNU1,PROSC,RAB11FIP1,STAR,UNC5D,ZNF703"
TCGA.AA.A01S	8	36882043	38115713	286	-0.92065	SMALL-LOSS	NONFOCAL	14	"ADGRA2,ADRB3,ASH2L,BAG4,BRF2,DDHD2,EIF4EBP1,ERLIN2,GOT1L1,LSM1,PROSC,RAB11FIP1,STAR,ZNF703"
TCGA.DY.A0XA	8	37274247	41258248	1010	-0.7104	SMALL-LOSS	NONFOCAL	32	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,SFRP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4,ZNF703"
TCGA.AA.3549	8	37476754	40944011	863	-0.6426	SMALL-LOSS	NONFOCAL	31	"ADAM18,ADAM2,ADAM32,ADAM9,ADGRA2,ADRB3,ASH2L,BAG4,BRF2,C8orf4,C8orf86,DDHD2,EIF4EBP1,ERLIN2,FGFR1,GOT1L1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,PROSC,RAB11FIP1,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4,ZNF703"
TCGA.AZ.4308	8	37971941	40761785	783	-0.6043	SMALL-LOSS	NONFOCAL	22	"ADAM18,ADAM2,ADAM32,ADAM9,ASH2L,BAG4,C8orf4,C8orf86,DDHD2,FGFR1,HTRA4,IDO1,IDO2,LETM2,LSM1,PLEKHA2,PPAPDC1B,STAR,TACC1,TM2D2,WHSC1L1,ZMAT4"
TCGA.A6.5656	8	38260814	41717329	1059	-0.7808	SMALL-LOSS	NONFOCAL	21	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,C8orf4,C8orf86,FGFR1,GINS4,GOLGA7,HTRA4,IDO1,IDO2,LETM2,NKX6-3,PLEKHA2,SFRP1,TACC1,TM2D2,ZMAT4"
TCGA.AA.3496	8	38341615	40411786	595	-0.7051	SMALL-LOSS	NONFOCAL	13	"ADAM18,ADAM2,ADAM32,ADAM9,C8orf4,C8orf86,HTRA4,IDO1,IDO2,PLEKHA2,TACC1,TM2D2,ZMAT4"
TCGA.AA.3529	8	38535184	43778913	1226	-0.5333	SMALL-LOSS	NONFOCAL	36	"ADAM18,ADAM2,ADAM32,ADAM9,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,PLEKHA2,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,TACC1,THAP1,TM2D2,VDAC3,ZMAT4"
TCGA.AG.4021	8	39131689	43108468	1076	-0.7685	SMALL-LOSS	NONFOCAL	30	"ADAM18,ADAM2,ADAM32,AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AA.A01D.01A	8	39780034	43047418	234	-0.5201	SMALL-LOSS	NONFOCAL	27	"AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO1,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AA.3860	8	39800460	43679529	1018	-0.6333	SMALL-LOSS	NONFOCAL	27	"AGPAT6,ANK1,AP3M2,C8orf4,CHRNA6,CHRNB3,DKK4,FNTA,GINS4,GOLGA7,HGSNAT,HOOK3,IDO2,IKBKB,KAT6A,NKX6-3,PLAT,POLB,POMK,POTEA,RNF170,SFRP1,SLC20A2,SMIM19,THAP1,VDAC3,ZMAT4"
TCGA.AG.3885	8	41455342	42858298	296	-1.3064	SMALL-LOSS	NONFOCAL	17	"AGPAT6,ANK1,AP3M2,CHRNA6,CHRNB3,DKK4,HOOK3,IKBKB,KAT6A,NKX6-3,PLAT,POLB,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.NH.A6GB	8	41761806	42654229	157	-0.6097	SMALL-LOSS	NONFOCAL	11	"AP3M2,CHRNA6,CHRNB3,DKK4,IKBKB,KAT6A,PLAT,POLB,SLC20A2,SMIM19,VDAC3"
TCGA.D5.5540	8	42140548	43778913	162	-0.8544	SMALL-LOSS	NONFOCAL	15	"CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AA.A02E.01A	8	42162660	43172418	126	-0.9548	SMALL-LOSS	NONFOCAL	15	"CHRNA6,CHRNB3,DKK4,FNTA,HGSNAT,HOOK3,IKBKB,POLB,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.AA.A02F.01A	8	42163804	51314753	246	-0.7851	SMALL-LOSS	NONFOCAL	24	"C8orf22,CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,HGSNAT,HOOK3,IKBKB,MCM4,POLB,POMK,POTEA,PRKDC,RNF170,SLC20A2,SMIM19,SNAI2,SNTG1,SPIDR,THAP1,UBE2V2,VDAC3"
TCGA.AG.A02G.01A	8	42202423	49643860	223	-0.7298	SMALL-LOSS	NONFOCAL	20	"CEBPD,CHRNA6,CHRNB3,DKK4,EFCAB1,FNTA,HGSNAT,HOOK3,MCM4,POLB,POMK,POTEA,PRKDC,RNF170,SLC20A2,SMIM19,SPIDR,THAP1,UBE2V2,VDAC3"
TCGA.AZ.4684.01A	8	42252587	43147576	92	-0.5381	SMALL-LOSS	NONFOCAL	11	"CHRNA6,CHRNB3,FNTA,HGSNAT,HOOK3,POMK,RNF170,SLC20A2,SMIM19,THAP1,VDAC3"
TCGA.CK.5914.01A	8	42275319	43157069	87	-0.5783	SMALL-LOSS	NONFOCAL	11	"CHRNA6,CHRNB3,FNTA,HGSNAT,HOOK3,POMK,POTEA,RNF170,SLC20A2,SMIM19,THAP1"
TCGA.AA.3681	8	46936839	55881570	2120	-0.5197	SMALL-LOSS	NONFOCAL	23	"ATP6V1H,C8orf22,CEBPD,EFCAB1,FAM150A,LYPLA1,MCM4,MRPL15,NPBWR1,OPRK1,PCMTD1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,UBE2V2"
TCGA.A6.2671	8	47700478	73011229	7062	-0.6824	SMALL-LOSS	NONFOCAL	84	"ADHFE1,ARFGEF1,ARMC1,ASPH,ATP6V1H,BHLHE22,C8orf22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CEBPD,CHCHD7,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EFCAB1,EYA1,FAM110B,FAM150A,GGH,IMPAD1,LACTB2,LYN,LYPLA1,MCM4,MCMDC2,MOS,MRPL15,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NPBWR1,NSMAF,OPRK1,PCMTD1,PDE7A,PENK,PLAG1,PPP1R42,PRDM14,PREX2,PRKDC,PXDNL,RAB2A,RB1CC1,RGS20,RP1,RPS20,RRS1,SDCBP,SDR16C5,SGK3,SLCO5A1,SNAI2,SNTG1,SOX17,SPIDR,ST18,SULF1,TCEA1,TCF24,TGS1,TMEM68,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBE2V2,UBXN2B,VCPIP1,XKR4,XKR9,YTHDF3"
TCGA.AZ.4614	8	48468834	58514611	2822	-0.8134	SMALL-LOSS	NONFOCAL	34	"ATP6V1H,C8orf22,CEBPD,CHCHD7,EFCAB1,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RPS20,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,UBE2V2,XKR4"
TCGA.F5.6571	8	50317983	89649844	10841	-0.6152	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.D5.5540	8	52097343	55695540	1114	-0.8851	SMALL-LOSS	NONFOCAL	14	"ATP6V1H,FAM150A,LYPLA1,MRPL15,NPBWR1,OPRK1,PCMTD1,PXDNL,RB1CC1,RGS20,RP1,SOX17,ST18,TCEA1"
TCGA.AA.A02F.01A	8	53558214	59509898	147	-0.8642	SMALL-LOSS	NONFOCAL	26	"ATP6V1H,CHCHD7,CYP7A1,FAM110B,IMPAD1,LYN,LYPLA1,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PENK,PLAG1,RB1CC1,RGS20,RP1,RPS20,SDCBP,SDR16C5,SOX17,TCEA1,TGS1,TMEM68,UBXN2B,XKR4"
TCGA.A6.3808.01A	8	54754091	57228527	89	-0.6035	SMALL-LOSS	NONFOCAL	16	"ATP6V1H,CHCHD7,LYN,LYPLA1,MOS,MRPL15,PLAG1,RGS20,RP1,RPS20,SDR16C5,SOX17,TCEA1,TGS1,TMEM68,XKR4"
TCGA.F5.6813	8	58992404	73161143	4022	-0.5278	SMALL-LOSS	NONFOCAL	50	"ADHFE1,ARFGEF1,ARMC1,ASPH,BHLHE22,C8orf34,C8orf44,C8orf44-SGK3,C8orf46,CA8,CHD7,CLVS1,COPS5,CPA6,CRH,CSPP1,CYP7A1,CYP7B1,DNAJC5B,EYA1,FAM110B,GGH,LACTB2,MCMDC2,MSC,MTFR1,MYBL1,NCOA2,NKAIN3,NSMAF,PDE7A,PPP1R42,PRDM14,PREX2,RAB2A,RRS1,SDCBP,SGK3,SLCO5A1,SULF1,TCF24,TOX,TRAM1,TRIM55,TRPA1,TTPA,UBXN2B,VCPIP1,XKR9,YTHDF3"
TCGA.AA.3850	8	82273734	94396447	2754	-0.61055	SMALL-LOSS	NONFOCAL	42	"ATP6V0D2,C8orf59,C8orf87,C8orf88,CA1,CA13,CA2,CA3,CALB1,CHMP4C,CNBD1,CNGB3,CPNE3,DCAF4L2,DECR1,E2F5,FABP12,FABP4,FABP9,IMPA1,LRRC69,LRRCC1,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,PMP2,PSKH2,RALYL,RIPK2,RMDN1,RUNX1T1,SLC10A5,SLC26A7,SLC7A13,SNX16,TMEM55A,TMEM64,TRIQK,WWP1,ZFAND1"
TCGA.F5.6813	8	83160307	89944413	1487	-0.5408	SMALL-LOSS	NONFOCAL	18	"ATP6V0D2,C8orf59,CA1,CA13,CA2,CA3,CNBD1,CNGB3,CPNE3,DCAF4L2,E2F5,LRRCC1,MMP16,PSKH2,RALYL,RMDN1,SLC7A13,WWP1"
TCGA.AA.3862.01A	8	87656786	93029407	147	-0.6159	SMALL-LOSS	NONFOCAL	17	"C8orf88,CALB1,CNBD1,CNGB3,DCAF4L2,DECR1,LRRC69,MMP16,NBN,NECAB1,OSGIN2,OTUD6B,RIPK2,RUNX1T1,SLC26A7,TMEM55A,TMEM64"
TCGA.AG.A02G.01A	8	91929669	97343187	249	-0.9915	SMALL-LOSS	NONFOCAL	30	"C8orf37,C8orf87,C8orf88,CCNE2,CDH17,DPY19L4,ESRP1,FAM92A1,FSBP,GDF6,GEM,INTS8,KIAA1429,LRRC69,MTERF3,NDUFAF6,NECAB1,OTUD6B,PDP1,PLEKHF2,PTDSS1,RAD54B,RBM12B,RUNX1T1,SLC26A7,TMEM55A,TMEM67,TP53INP1,TRIQK,UQCRB"
TCGA.A6.2677	8	103953318	107295335	873	-0.6428	SMALL-LOSS	NONFOCAL	12	"ATP6V1C1,BAALC,CTHRC1,DCAF13,DCSTAMP,DPYS,FZD6,LRP12,OXR1,RIMS2,SLC25A32,ZFPM2"
TCGA.D5.5539	8	129778605	146293413	5934	-1.0444	SMALL-LOSS	NONFOCAL	116	Too-Many
TCGA.F5.6813	8	129912739	146293413	5904	-0.5289	SMALL-LOSS	NONFOCAL	116	Too-Many
TCGA.AA.3496	8	135796965	146293413	3361	-0.6752	SMALL-LOSS	NONFOCAL	99	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KHDRBS3,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.DM.A1D6	8	137565872	146293413	2683	-0.9162	SMALL-LOSS	NONFOCAL	98	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AA.A00L.01A	8	139158151	146171369	454	-0.579	SMALL-LOSS	NONFOCAL	97	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM135B,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.A6.2672	8	139655297	146293413	1754	-0.5341	SMALL-LOSS	NONFOCAL	97	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COL22A1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.A6.5661	8	140247895	146293413	1443	-0.8835	SMALL-LOSS	NONFOCAL	96	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.A6.5665	8	140266703	146293413	1433	-0.6114	SMALL-LOSS	NONFOCAL	96	"ADCK5,ADGRB1,AGO2,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,CHRAC1,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KCNK9,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TRAPPC9,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.A6.2677	8	141778433	146293413	795	-1.0717	SMALL-LOSS	NONFOCAL	92	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTK2,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.CK.5914.01A	8	142148074	146279416	533	-0.5386	SMALL-LOSS	NONFOCAL	91	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DENND3,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPR20,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PTP4A3,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC45A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.CM.6172	8	142452224	146293413	693	-0.9326	SMALL-LOSS	NONFOCAL	87	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.AG.3594	8	142490078	146293413	675	-0.6893	SMALL-LOSS	NONFOCAL	87	"ADCK5,ADGRB1,ARC,ARHGAP39,BOP1,C8orf31,C8orf33,C8orf82,CCDC166,COMMD5,CPSF1,CYC1,CYHR1,CYP11B1,CYP11B2,DGAT1,EEF1D,EPPK1,EXOSC4,FAM83H,FBXL6,FOXH1,GLI4,GML,GPAA1,GPIHBP1,GPT,GRINA,GSDMD,HGH1,HSF1,JRK,KIFC2,LRRC14,LRRC24,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAF1,MAFA,MAPK15,MFSD3,MROH1,MROH5,MROH6,NAPRT,NRBP2,OPLAH,PARP10,PLEC,PPP1R16A,PSCA,PUF60,PYCRL,RECQL4,RHPN1,RPL8,SCRIB,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SLURP1,SPATC1,THEM6,TIGD5,TMEM249,TONSL,TOP1MT,TSNARE1,TSTA3,VPS28,ZC3H3,ZFP41,ZNF16,ZNF250,ZNF251,ZNF34,ZNF517,ZNF623,ZNF696,ZNF7,ZNF707"
TCGA.A6.3808.01A	8	143623322	144618378	101	-0.5838	SMALL-LOSS	NONFOCAL	24	"ADGRB1,ARC,C8orf31,CYP11B1,CYP11B2,GLI4,GML,GPIHBP1,JRK,LY6D,LY6E,LY6H,LY6K,LYNX1,LYPD2,MAFA,PSCA,RHPN1,SLURP1,THEM6,TOP1MT,ZC3H3,ZFP41,ZNF696"
TCGA.AA.A010.01A	8	144102286	144623482	56	-1.1102	SMALL-LOSS	NONFOCAL	11	"C8orf31,GLI4,GPIHBP1,LY6E,LY6H,MAFA,RHPN1,TOP1MT,ZC3H3,ZFP41,ZNF696"
TCGA.AG.4009.01A	8	144999110	145759468	117	-0.6315	SMALL-LOSS	NONFOCAL	36	"ADCK5,ARHGAP39,BOP1,C8orf82,CPSF1,CYC1,CYHR1,DGAT1,EXOSC4,FBXL6,FOXH1,GPAA1,GPT,GRINA,HGH1,HSF1,KIFC2,LRRC14,LRRC24,MAF1,MFSD3,MROH1,OPLAH,PARP10,PLEC,PPP1R16A,RECQL4,SCRT1,SCX,SHARPIN,SLC39A4,SLC52A2,SPATC1,TMEM249,TONSL,VPS28"
TCGA.AA.3819	9	192128	19415059	9903	-0.6447	SMALL-LOSS	NONFOCAL	61	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,HAUS6,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.DY.A1DD	9	192128	19832461	10083	-0.845	SMALL-LOSS	NONFOCAL	62	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FREM1,GLDC,GLIS3,HAUS6,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,LURAP1L,MLANA,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AA.3517	9	192128	21727207	10814	-0.7862	SMALL-LOSS	NONFOCAL	82	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DOCK8,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AZ.4614	9	192128	25544792	11944	-0.8231	SMALL-LOSS	NONFOCAL	88	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AG.4021	9	192128	28198374	13303	-0.7297	SMALL-LOSS	NONFOCAL	100	"ACER2,ADAMTSL1,AK3,BNC2,C9orf66,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,DOCK8,ELAVL2,EQTN,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KANK1,KCNV2,KDM4C,KIAA0020,KIAA2026,KLHL9,LINGO2,LOC100506422,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RFX3,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21"
TCGA.AD.6965	9	192128	44830238	16684	-0.5748	SMALL-LOSS	NONFOCAL	206	Too-Many
TCGA.NH.A6GA	9	192128	107364420	29271	-0.6852	SMALL-LOSS	NONFOCAL	387	Too-Many
TCGA.AG.A026	9	192128	136304496	39459	-0.5184	SMALL-LOSS	NONFOCAL	649	Too-Many
TCGA.AZ.6608	9	192128	141071474	40457	-0.5616	SMALL-LOSS	NONFOCAL	751	Too-Many
TCGA.CM.6675	9	4022296	26444582	9929	-1.0512	SMALL-LOSS	NONFOCAL	79	"ACER2,ADAMTSL1,AK3,BNC2,C9orf92,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,ELAVL2,ERMP1,FOCAD,FREM1,GLDC,GLIS3,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,IL33,INSL4,INSL6,IZUMO3,JAK2,KDM4C,KIAA2026,KLHL9,LOC100506422,LURAP1L,MLANA,MLLT3,MPDZ,MTAP,NFIB,PDCD1LG2,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPRD,RANBP6,RCL1,RIC1,RLN1,RLN2,RPS6,RRAGA,SAXO1,SH3GL2,SLC1A1,SLC24A2,SNAPC3,SPATA6L,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,ZDHHC21"
TCGA.A6.2671	9	4032094	7989444	2022	-0.6162	SMALL-LOSS	NONFOCAL	26	"AK3,CD274,CDC37L1,ERMP1,GLDC,GLIS3,IL33,INSL4,INSL6,JAK2,KDM4C,KIAA2026,MLANA,PDCD1LG2,PLGRKT,PPAPDC2,RANBP6,RCL1,RIC1,RLN1,RLN2,SLC1A1,SPATA6L,TMEM261,TPD52L3,UHRF2"
TCGA.AA.3941	9	5328914	6397143	357	-1.1763	SMALL-LOSS	NONFOCAL	11	"CD274,ERMP1,IL33,KIAA2026,MLANA,PDCD1LG2,PLGRKT,RANBP6,RIC1,RLN1,TPD52L3"
TCGA.DM.A0XF	9	12000098	141071474	34189	-0.5278	SMALL-LOSS	NONFOCAL	713	Too-Many
TCGA.AA.A01S	9	12717404	27664431	6307	-0.93165	SMALL-LOSS	NONFOCAL	60	"ACER2,ADAMTSL1,BNC2,C9orf72,C9orf92,CAAP1,CCDC171,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRTA1,ELAVL2,EQTN,FOCAD,FREM1,HACD4,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IZUMO3,KLHL9,LOC100506422,LRRC19,LURAP1L,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PLAA,PLIN2,PSIP1,RPS6,RRAGA,SAXO1,SH3GL2,SLC24A2,SNAPC3,TEK,TTC39B,TUSC1,ZDHHC21"
TCGA.AA.3941	9	13719313	17702537	1896	-0.5253	SMALL-LOSS	NONFOCAL	12	"BNC2,C9orf92,CCDC171,CER1,CNTLN,FREM1,NFIB,PSIP1,SH3GL2,SNAPC3,TTC39B,ZDHHC21"
TCGA.AZ.6607	9	19516862	22801248	1221	-0.5917	SMALL-LOSS	NONFOCAL	25	"CDKN2A,CDKN2B,DMRTA1,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MLLT3,MTAP,SLC24A2"
TCGA.AA.3941	9	19649737	22201585	976	-0.6812	SMALL-LOSS	NONFOCAL	24	"CDKN2A,CDKN2B,FOCAD,HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNW1,KLHL9,MLLT3,MTAP,SLC24A2"
TCGA.A6.3808.01A	9	21029271	21440466	26	-0.6807	SMALL-LOSS	NONFOCAL	17	"HACD4,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNW1,KLHL9"
TCGA.CA.5254	9	21310587	23154690	602	-1.1063	SMALL-LOSS	NONFOCAL	11	"CDKN2A,CDKN2B,DMRTA1,IFNA1,IFNA13,IFNA2,IFNA6,IFNA8,IFNE,KLHL9,MTAP"
TCGA.AA.3517	9	22430803	112553002	20452	-0.8038	SMALL-LOSS	NONFOCAL	327	Too-Many
TCGA.AZ.4614	9	26242202	69824963	4315	-0.826	SMALL-LOSS	NONFOCAL	121	Too-Many
TCGA.AG.3909.01A	9	34306210	34662259	77	-0.7824	SMALL-LOSS	NONFOCAL	15	"ARID3C,C9orf24,CCL27,CNTFR,DCTN3,DNAI1,ENHO,FAM219A,GALT,IL11RA,KIAA1161,KIF24,NUDT2,RPP25L,SIGMAR1"
TCGA.AA.A00N.01A	9	34306210	35107402	156	-0.831	SMALL-LOSS	NONFOCAL	26	"ARID3C,C9orf131,C9orf24,CCL19,CCL21,CCL27,CNTFR,DCTN3,DNAI1,DNAJB5,ENHO,FAM205A,FAM214B,FAM219A,FANCG,GALT,IL11RA,KIAA1045,KIAA1161,KIF24,NUDT2,PIGO,RPP25L,SIGMAR1,STOML2,VCP"
TCGA.AH.6897	9	36885918	69827538	715	-0.5438	SMALL-LOSS	NONFOCAL	32	"ALDH1B1,ANKRD18A,ANKRD20A1,ANKRD20A2,ANKRD20A3,ANKRD20A4,CBWD5,CBWD6,CNTNAP3,CNTNAP3B,DCAF10,EXOSC3,FBXO10,FOXD4L4,FOXD4L6,FRMPD1,GRHPR,IGFBPL1,PAX5,POLR1E,SHB,SLC25A51,SPATA31A1,SPATA31A3,SPATA31A5,SPATA31A6,SPATA31A7,TOMM5,TRMT10B,ZBTB5,ZCCHC7,ZNF658"
TCGA.AZ.6607	9	36997895	38630086	544	-0.5243	SMALL-LOSS	NONFOCAL	16	"ALDH1B1,ANKRD18A,DCAF10,EXOSC3,FBXO10,FRMPD1,GRHPR,IGFBPL1,PAX5,POLR1E,SHB,SLC25A51,TOMM5,TRMT10B,ZBTB5,ZCCHC7"
TCGA.F4.6808	9	44866027	141071474	23840	-0.6745	SMALL-LOSS	NONFOCAL	549	Too-Many
TCGA.NH.A8F8	9	69827538	114636369	15654	-0.5997	SMALL-LOSS	NONFOCAL	218	Too-Many
TCGA.SS.A7HO	9	70987820	93951042	8424	-0.8373	SMALL-LOSS	NONFOCAL	82	"ABHD17B,AGTPBP1,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf153,C9orf170,C9orf40,C9orf41,C9orf47,C9orf57,C9orf64,C9orf85,CDK20,CEP78,CKS2,CTSL,DAPK1,DIRAS2,FAM122A,FAM189A2,FOXB2,FRMD3,FXN,GADD45G,GAS1,GCNT1,GDA,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,KLF9,LOC286238,MAMDC2,NAA35,NMRK1,NTRK2,NXNL2,OSTF1,PCSK5,PGM5,PIP5K1B,PRKACG,PRUNE2,PSAT1,PTAR1,RASEF,RFK,RMI1,RORB,S1PR3,SECISBP2,SEMA4D,SHC3,SLC28A3,SMC5,SPATA31C1,SPATA31C2,SPATA31D1,SPATA31D3,SPATA31D4,SPATA31E1,SPIN1,SYK,TJP2,TLE1,TLE4,TMC1,TMEM2,TMEM252,TRPM3,TRPM6,UBQLN1,VPS13A,ZCCHC6,ZFAND5"
TCGA.EI.6514	9	70987820	141071474	23846	-0.5208	SMALL-LOSS	NONFOCAL	537	Too-Many
TCGA.D5.6538	9	92821014	100843367	2422	-0.6097	SMALL-LOSS	NONFOCAL	58	"AAED1,ANP32B,ASPN,AUH,BARX1,BICD2,C9orf129,C9orf156,C9orf3,C9orf89,CCDC180,CDC14B,CENPP,CTSV,DIRAS2,ECM2,ERCC6L2,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,FGD3,FOXE1,HABP4,HEMGN,HIATL1,HSD17B3,IARS,IPPK,LOC158434,NANS,NCBP1,NFIL3,NINJ1,NOL8,NUTM2F,NUTM2G,OGN,OMD,PHF2,PTCH1,PTPDC1,ROR2,SLC35D2,SPTLC1,SUSD3,SYK,TDRD7,TMOD1,TSTD2,WNK2,XPA,ZNF169,ZNF367,ZNF484,ZNF510,ZNF782"
TCGA.AA.3549	9	95892442	98072028	621	-0.6034	SMALL-LOSS	NONFOCAL	15	"BARX1,C9orf129,C9orf3,FAM120A,FAM120AOS,FANCC,FBP1,FBP2,HIATL1,NINJ1,NUTM2F,PHF2,PTPDC1,WNK2,ZNF169"
TCGA.SS.A7HO	9	95935292	112471763	5766	-0.8162	SMALL-LOSS	NONFOCAL	97	"AAED1,ABCA1,ACTL7A,ACTL7B,ALDOB,ALG2,ANKS6,ANP32B,BAAT,BARX1,C9orf129,C9orf156,C9orf3,CCDC180,CDC14B,COL15A1,CORO2A,CTNNAL1,CTSV,CYLC2,EPB41L4B,ERCC6L2,ERP44,FAM120A,FAM120AOS,FAM206A,FANCC,FBP1,FBP2,FKTN,FOXE1,FRRS1L,FSD1L,GABBR2,GALNT12,GRIN3A,HABP4,HEMGN,HIATL1,HSD17B3,IKBKAP,INVS,KLF4,LOC158434,LPPR1,MRPL50,MSANTD3,MSANTD3-TMEFF1,MURC,NANS,NCBP1,NIPSNAP3A,NIPSNAP3B,NR4A3,NUTM2F,NUTM2G,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,PALM2,PHF2,PPP3R2,PTCH1,PTPDC1,PTPN3,RAD23B,RNF20,SEC61B,SLC35D2,SLC44A1,SMC2,STX17,TAL2,TBC1D2,TDRD7,TEX10,TGFBR1,TMEFF1,TMEM245,TMEM246,TMEM38B,TMOD1,TRIM14,TSTD2,WNK2,XPA,ZNF169,ZNF189,ZNF367,ZNF462,ZNF510,ZNF782"
TCGA.AA.3556	9	97939117	99567383	515	-0.7729	SMALL-LOSS	NONFOCAL	11	"AAED1,CDC14B,ERCC6L2,FANCC,HABP4,HSD17B3,LOC158434,PTCH1,SLC35D2,ZNF367,ZNF510"
TCGA.AA.3850	9	103578264	107418928	1423	-0.61195	SMALL-LOSS	NONFOCAL	18	"ALDOB,BAAT,CYLC2,GRIN3A,LPPR1,MRPL50,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13F1,PPP3R2,RNF20,SMC2,TMEM246,ZNF189"
TCGA.AA.3941	9	104386062	107484855	1149	-0.6006	SMALL-LOSS	NONFOCAL	11	"CYLC2,GRIN3A,OR13C2,OR13C3,OR13C4,OR13C5,OR13C8,OR13C9,OR13D1,OR13F1,SMC2"
TCGA.NH.A6GA	9	107371879	113705203	2740	-0.6773	SMALL-LOSS	NONFOCAL	31	"ABCA1,ACTL7A,ACTL7B,AKAP2,C9orf152,CTNNAL1,EPB41L4B,FAM206A,FKTN,FRRS1L,FSD1L,IKBKAP,KLF4,LPAR1,MUSK,NIPSNAP3A,NIPSNAP3B,OR13C9,OR13D1,PALM2,PALM2-AKAP2,PTPN3,RAD23B,SLC44A1,SVEP1,TAL2,TMEM245,TMEM38B,TXN,TXNDC8,ZNF462"
TCGA.AA.3517	9	113423431	141071474	8660	-0.8312	SMALL-LOSS	NONFOCAL	334	Too-Many
TCGA.NH.A8F8	9	115115212	124854549	3947	-0.6015	SMALL-LOSS	NONFOCAL	53	"AKNA,ALAD,AMBP,ASTN2,ATP6V1G1,BRINP1,BSPRY,C5,C9orf43,C9orf91,CDC26,CDK5RAP2,CNTRL,COL27A1,DAB2IP,DEC1,DFNB31,FBXW2,FKBP15,GSN,HDHD3,HSDL2,INIP,KIAA1958,KIF12,LOC100505478,MEGF9,ORM1,ORM2,PAPPA,PHF19,POLE3,PRPF4,PSMD5,RAB14,RGS3,RNF183,SLC31A1,SLC31A2,SLC46A2,SNX30,STOM,TLR4,TNC,TNFSF15,TNFSF8,TRAF1,TRIM32,TTLL11,WDR31,ZFP37,ZNF618,ZNF883"
TCGA.AM.5820	9	115741022	119826601	1760	-0.6199	SMALL-LOSS	NONFOCAL	33	"AKNA,ALAD,AMBP,ASTN2,ATP6V1G1,BSPRY,C9orf43,C9orf91,CDC26,COL27A1,DEC1,DFNB31,FKBP15,HDHD3,KIF12,LOC100505478,ORM1,ORM2,PAPPA,POLE3,PRPF4,RGS3,RNF183,SLC31A1,SLC31A2,TNC,TNFSF15,TNFSF8,TRIM32,WDR31,ZFP37,ZNF618,ZNF883"
TCGA.NH.A8F8	9	125545661	141071474	3864	-0.674	SMALL-LOSS	NONFOCAL	250	Too-Many
TCGA.AA.A00N.01A	9	130453004	131190534	239	-0.5374	SMALL-LOSS	NONFOCAL	29	"AK1,C9orf117,C9orf16,CDK9,CERCAM,CIZ1,COQ4,DNM1,DPM2,ENG,FAM102A,FPGS,GOLGA2,LCN2,NAIF1,PIP5KL1,PTGES2,PTRH1,SH2D3C,SLC25A25,SLC27A4,ST6GALNAC4,ST6GALNAC6,STXBP1,SWI5,TOR2A,TRUB2,TTC16,URM1"
TCGA.AA.A01Q.01A	9	130491807	131193402	190	-0.6742	SMALL-LOSS	NONFOCAL	26	"AK1,C9orf16,CDK9,CERCAM,CIZ1,COQ4,DNM1,DPM2,ENG,FAM102A,FPGS,GOLGA2,LCN2,NAIF1,PIP5KL1,PTGES2,SH2D3C,SLC25A25,SLC27A4,ST6GALNAC4,ST6GALNAC6,SWI5,TOR2A,TRUB2,TTC16,URM1"
TCGA.CL.5918	9	131003676	141071474	2445	-0.6848	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.DM.A28G	9	131354910	132068557	103	-0.712	SMALL-LOSS	NONFOCAL	20	"C9orf114,CCBL1,CRAT,DOLK,DOLPP1,ENDOG,FAM73B,IER5L,LRRC8A,NUP188,PHYHD1,PKN3,PPP2R4,SET,SH3GLB2,SPTAN1,TBC1D13,WDR34,ZDHHC12,ZER1"
TCGA.AY.A71X	9	132785905	134358656	383	-0.5187	SMALL-LOSS	NONFOCAL	17	"ABL1,AIF1L,ASS1,EXOSC2,FAM78A,FIBCD1,FNBP1,FUBP3,GPR107,HMCN2,LAMC3,NCS1,NUP214,PPAPDC3,PRDM12,PRRC2B,QRFP"
TCGA.G4.6322	9	133280761	134136514	239	-0.6699	SMALL-LOSS	NONFOCAL	12	"ABL1,AIF1L,ASS1,EXOSC2,FAM78A,FIBCD1,FUBP3,HMCN2,LAMC3,NUP214,PRDM12,QRFP"
TCGA.AA.3861.01A	9	135977824	136598926	147	-0.6971	SMALL-LOSS	NONFOCAL	20	"ABO,ADAMTS13,ADAMTSL2,CACFD1,DBH,FAM163B,GBGT1,MED22,OBP2B,RALGDS,REXO4,RPL7A,SARDH,SLC2A6,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C"
TCGA.AA.3862.01A	9	136030515	137622055	213	-0.6169	SMALL-LOSS	NONFOCAL	24	"ABO,ADAMTS13,ADAMTSL2,BRD3,CACFD1,COL5A1,DBH,FAM163B,GBGT1,MED22,OBP2B,REXO4,RPL7A,RXRA,SARDH,SLC2A6,STKLD1,SURF1,SURF2,SURF4,SURF6,TMEM8C,VAV2,WDR5"
TCGA.AG.4009.01A	9	136103833	136337095	82	-0.571	SMALL-LOSS	NONFOCAL	12	"ABO,ADAMTS13,CACFD1,MED22,REXO4,RPL7A,SLC2A6,STKLD1,SURF1,SURF2,SURF4,SURF6"
TCGA.AF.2692	9	136135107	141071474	1159	-0.8603	SMALL-LOSS	NONFOCAL	112	Too-Many
TCGA.AG.A026	9	136305438	137847563	479	-0.872	SMALL-LOSS	NONFOCAL	15	"ADAMTS13,ADAMTSL2,BRD3,CACFD1,COL5A1,DBH,FAM163B,FCN1,FCN2,RXRA,SARDH,SLC2A6,TMEM8C,VAV2,WDR5"
TCGA.AA.A01Q.01A	9	136322985	137004963	100	-0.5339	SMALL-LOSS	NONFOCAL	11	"ADAMTS13,ADAMTSL2,BRD3,CACFD1,DBH,FAM163B,SARDH,SLC2A6,TMEM8C,VAV2,WDR5"
TCGA.A6.5661	9	136832576	141071474	937	-1.2464	SMALL-LOSS	NONFOCAL	95	"ABCA2,AGPAT2,ANAPC2,ARRDC1,BRD3,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,RXRA,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,VAV2,WDR5,ZMYND19"
TCGA.AA.3861.01A	9	137693730	141009976	530	-0.5667	SMALL-LOSS	NONFOCAL	91	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,COL5A1,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FCN1,FCN2,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,OLFM1,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.AA.A00N.01A	9	137967539	139278071	171	-0.5372	SMALL-LOSS	NONFOCAL	22	"C9orf116,C9orf62,C9orf69,CAMSAP1,CARD9,DNLZ,GLT6D1,GPSM1,KCNT1,LCN1,LCN9,LHX3,MRPS2,NACC2,OBP2A,OLFM1,PAEP,PPP1R26,QSOX2,SNAPC4,SOHLH1,UBAC1"
TCGA.AG.A026	9	138043800	141071474	540	-0.823	SMALL-LOSS	NONFOCAL	87	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf116,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf62,C9orf69,CACNA1B,CAMSAP1,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GLT6D1,GPSM1,GRIN1,INPP5E,KCNT1,LCN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCN9,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,MRPL41,MRPS2,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,OBP2A,PAEP,PHPT1,PMPCA,PNPLA7,PPP1R26,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SOHLH1,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,UBAC1,ZMYND19"
TCGA.CM.6679	9	138929783	140382635	149	-0.83995	SMALL-LOSS	NONFOCAL	68	"ABCA2,AGPAT2,ANAPC2,C8G,C9orf139,C9orf142,C9orf163,C9orf172,C9orf173,C9orf69,CARD9,CCDC183,CLIC3,CYSRT1,DNLZ,DPP7,EDF1,EGFL7,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GPSM1,GRIN1,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LHX3,LRRC26,MAMDC4,MAN1B1,NACC2,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PMPCA,PNPLA7,PTGDS,QSOX2,RABL6,RNF208,RNF224,SAPCD2,SDCCAG3,SEC16A,SLC34A3,SNAPC4,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1"
TCGA.A6.3808.01A	9	139308951	139902309	204	-1.2608	SMALL-LOSS	NONFOCAL	28	"ABCA2,AGPAT2,C8G,C9orf142,C9orf163,C9orf172,CCDC183,CLIC3,EDF1,EGFL7,FAM69B,FBXW5,INPP5E,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,MAMDC4,NOTCH1,PHPT1,PMPCA,PTGDS,RABL6,SEC16A,TMEM141,TRAF2"
TCGA.AA.A00N.01A	9	139390556	140777147	432	-0.5694	SMALL-LOSS	NONFOCAL	61	"ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf142,C9orf172,C9orf173,CACNA1B,CCDC183,CLIC3,CYSRT1,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19"
TCGA.AA.A00Z.01A	9	139747517	140174450	5	-0.7086	SMALL-LOSS	NONFOCAL	36	"ABCA2,ANAPC2,C8G,C9orf139,C9orf142,C9orf173,CLIC3,CYSRT1,DPP7,EDF1,ENTPD2,FAM166A,FBXW5,FUT7,GRIN1,LCN12,LCNL1,LRRC26,MAMDC4,MAN1B1,NDOR1,NELFB,NPDC1,PTGDS,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1"
TCGA.AG.4009.01A	9	139874349	140218139	86	-0.6437	SMALL-LOSS	NONFOCAL	32	"ABCA2,ANAPC2,C9orf139,C9orf142,C9orf173,CLIC3,CYSRT1,DPP7,ENTPD2,EXD3,FAM166A,FUT7,GRIN1,LCNL1,LRRC26,MAN1B1,NDOR1,NELFB,NPDC1,NRARP,PTGDS,RNF208,RNF224,SAPCD2,SLC34A3,SSNA1,TMEM203,TMEM210,TOR4A,TPRN,TUBB4B,UAP1L1"
TCGA.AG.A01N.01A	10	93180	5005580	172	-0.5372	SMALL-LOSS	NONFOCAL	14	"ADARB2,AKR1C1,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,TUBB8,WDR37,ZMYND11"
TCGA.AZ.4614	10	135655	5396686	2623	-0.8435	SMALL-LOSS	NONFOCAL	16	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37,ZMYND11"
TCGA.G4.6322	10	135655	12581487	6001	-0.8298	SMALL-LOSS	NONFOCAL	48	"ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1E2,ANKRD16,ASB13,ATP5C1,CALML3,CALML5,CAMK1D,CDC123,CELF2,DHTKD1,DIP2C,ECHDC3,FAM208B,FBXO18,GATA3,GDI2,GTPBP4,IDI1,IDI2,IL15RA,IL2RA,ITIH2,ITIH5,KIN,KLF6,LARP4B,NET1,NUDT5,PFKFB3,PFKP,PITRM1,PRKCQ,PROSER2,RBM17,SEC61A2,SFMBT2,TAF3,TUBAL3,UCN3,UPF2,USP6NL,WDR37,ZMYND11"
TCGA.AA.3979	10	135655	26141410	11403	-1.0578	SMALL-LOSS	NONFOCAL	111	Too-Many
TCGA.AA.3692	10	135655	31611255	13699	-0.7224	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.CK.5914.01A	10	323298	4889600	177	-0.6779	SMALL-LOSS	NONFOCAL	11	"ADARB2,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37"
TCGA.AG.3909.01A	10	327102	4889600	160	-0.7583	SMALL-LOSS	NONFOCAL	11	"ADARB2,AKR1E2,DIP2C,GTPBP4,IDI1,IDI2,KLF6,LARP4B,PFKP,PITRM1,WDR37"
TCGA.G4.6322	10	12626976	89493238	24845	-0.8037	SMALL-LOSS	NONFOCAL	339	Too-Many
TCGA.NH.A8F7	10	13208307	135434550	40765	-0.5528	SMALL-LOSS	NONFOCAL	665	Too-Many
TCGA.AA.A00J.01A	10	15647659	24721877	343	-0.7614	SMALL-LOSS	NONFOCAL	37	"ARL5B,ARMC3,BMI1,C10orf113,C10orf67,C1QL3,CACNB2,CASC10,COMMD3,COMMD3-BMI1,CUBN,DNAJC1,EBLN1,FAM188A,HACD1,ITGA8,KIAA1217,MALRD1,MLLT10,MRC1,MSRB2,NEBL,NSUN6,OTUD1,PIP4K2A,PLXDC2,PTER,PTF1A,RSU1,SKIDA1,SLC39A12,SPAG6,ST8SIA6,STAM,TMEM236,TRDMT1,VIM"
TCGA.AA.A01T	10	19159983	23141883	1411	-0.7149	SMALL-LOSS	NONFOCAL	14	"BMI1,C10orf113,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,MALRD1,MLLT10,NEBL,PIP4K2A,PLXDC2,SKIDA1,SPAG6"
TCGA.AG.A01Y	10	19755704	23954213	1396	-0.7783	SMALL-LOSS	NONFOCAL	19	"ARMC3,BMI1,C10orf113,C10orf67,CASC10,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,MALRD1,MLLT10,MSRB2,NEBL,OTUD1,PIP4K2A,PLXDC2,PTF1A,SKIDA1,SPAG6"
TCGA.AG.A020	10	21995898	24872012	916	-0.7315	SMALL-LOSS	NONFOCAL	14	"ARMC3,BMI1,C10orf67,COMMD3,COMMD3-BMI1,DNAJC1,EBLN1,KIAA1217,MLLT10,MSRB2,OTUD1,PIP4K2A,PTF1A,SPAG6"
TCGA.A6.A567	10	24023680	27688459	1322	-0.7117	SMALL-LOSS	NONFOCAL	16	"ABI1,ACBD5,ANKRD26,APBB1IP,ARHGAP21,ENKUR,GAD2,GPR158,KIAA1217,MASTL,MYO3A,PDSS1,PRTFDC1,PTCHD3,THNSL1,YME1L1"
TCGA.AM.5820	10	27241779	29513354	883	-0.8493	SMALL-LOSS	NONFOCAL	12	"ACBD5,ANKRD26,ARMC4,BAMBI,C10orf126,MASTL,MKX,MPP7,PTCHD3,RAB18,WAC,YME1L1"
TCGA.D5.6535	10	37548184	53109722	2831	-1.0787	SMALL-LOSS	NONFOCAL	72	"A1CF,AGAP4,AGAP6,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,ASAH2,ASAH2B,BMS1,C10orf10,C10orf128,C10orf142,C10orf25,C10orf53,C10orf71,CH17-360D5.1,CHAT,CSGALNACT2,CXCL12,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,FAM21A,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,LRRC18,MAPK8,MARCH8,MSMB,MTRNR2L7,NCOA4,NPY4R,OGDHL,OR13A1,PARG,PGBD3,PRKG1,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SGMS1,SLC18A3,SYT15,TIMM23,TIMM23B,TMEM72,VSTM4,WDFY4,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485,ZNF488"
TCGA.AG.A020	10	37825488	49775372	1725	-0.8984	SMALL-LOSS	NONFOCAL	46	"AGAP4,AGAP9,ALOX5,ANTXRL,ANXA8,ANXA8L1,ARHGAP22,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FAM25C,FAM25G,FRMPD2,FXYD4,GDF10,GDF2,GPRIN2,HNRNPF,MAPK8,MARCH8,MTRNR2L7,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RBP3,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF248,ZNF25,ZNF32,ZNF33A,ZNF33B,ZNF37A,ZNF485,ZNF488"
TCGA.AA.3692	10	38987168	47085302	1162	-0.7505	SMALL-LOSS	NONFOCAL	27	"AGAP4,ALOX5,BMS1,C10orf10,C10orf142,C10orf25,CSGALNACT2,CXCL12,FAM21C,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.AA.3548	10	38987168	135434550	31459	-0.7121	SMALL-LOSS	NONFOCAL	561	Too-Many
TCGA.A6.A567	10	42433539	47567723	1168	-0.8621	SMALL-LOSS	NONFOCAL	32	"AGAP4,AGAP9,ALOX5,ANXA8,BMS1,C10orf10,C10orf142,C10orf25,CH17-360D5.1,CSGALNACT2,CXCL12,FAM21C,FAM25C,FAM25G,FXYD4,GPRIN2,HNRNPF,MARCH8,NPY4R,OR13A1,PTPN20,RASGEF1A,RASSF4,RET,SYT15,TMEM72,ZFAND4,ZNF22,ZNF239,ZNF32,ZNF33B,ZNF485"
TCGA.CI.6622	10	42433539	92623752	16175	-0.6063	SMALL-LOSS	NONFOCAL	256	Too-Many
TCGA.AA.A00N.01A	10	43230105	44880327	82	-0.7083	SMALL-LOSS	NONFOCAL	11	"BMS1,C10orf142,CSGALNACT2,CXCL12,FXYD4,HNRNPF,RASGEF1A,RET,ZNF239,ZNF32,ZNF485"
TCGA.AG.3887	10	44797086	47006368	533	-0.8645	SMALL-LOSS	NONFOCAL	15	"AGAP4,ALOX5,C10orf10,C10orf25,CXCL12,FAM21C,GPRIN2,MARCH8,OR13A1,PTPN20,RASSF4,SYT15,TMEM72,ZFAND4,ZNF22"
TCGA.CI.6621	10	46207800	47586665	27	-0.6534	SMALL-LOSS	NONFOCAL	11	"AGAP4,AGAP9,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15"
TCGA.CM.5349	10	46215430	47546129	19	-0.7049	SMALL-LOSS	NONFOCAL	11	"AGAP4,AGAP9,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15"
TCGA.AD.6899	10	46215430	47609551	38	-0.5646	SMALL-LOSS	NONFOCAL	11	"AGAP4,AGAP9,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15"
TCGA.DY.A1DG	10	46215765	47546129	12	-0.813	SMALL-LOSS	NONFOCAL	11	"AGAP4,AGAP9,ANXA8,CH17-360D5.1,FAM21C,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15"
TCGA.A6.3810.01A	10	46321331	47758777	26	-0.6098	SMALL-LOSS	NONFOCAL	12	"AGAP4,AGAP9,ANTXRL,ANXA8,ANXA8L1,CH17-360D5.1,FAM25C,FAM25G,GPRIN2,NPY4R,PTPN20,SYT15"
TCGA.A6.2671	10	46691158	133471515	29784	-0.6842	SMALL-LOSS	NONFOCAL	511	Too-Many
TCGA.AA.3692	10	47099687	122880680	25069	-0.714	SMALL-LOSS	NONFOCAL	456	Too-Many
TCGA.AG.3887	10	47546322	122880680	24963	-0.7433	SMALL-LOSS	NONFOCAL	456	Too-Many
TCGA.A6.A567	10	47659139	135434550	29992	-0.8165	SMALL-LOSS	NONFOCAL	534	Too-Many
TCGA.AA.3517	10	48318618	66142147	5980	-0.8086	SMALL-LOSS	NONFOCAL	65	"A1CF,ADO,AGAP6,ANK3,ARHGAP22,ARID5B,ASAH2,ASAH2B,BICC1,C10orf107,C10orf128,C10orf53,C10orf71,CCDC6,CDK1,CHAT,CISD1,CSTF2T,DKK1,DRGX,EGR2,ERCC6,ERCC6-PGBD3,FAM13C,FAM170B,FAM21A,FAM25C,FAM25G,FRMPD2,GDF10,GDF2,IPMK,JMJD1C,LRRC18,MAPK8,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,NRBF2,OGDHL,PARG,PCDH15,PGBD3,PHYHIPL,PRKG1,PTPN20,RBP3,REEP3,RHOBTB1,RTKN2,SGMS1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,TMEM26,UBE2D1,VSTM4,WDFY4,ZNF365,ZNF488,ZWINT"
TCGA.AA.3980.01A	10	49654384	51130334	176	-0.5351	SMALL-LOSS	NONFOCAL	16	"ARHGAP22,C10orf128,C10orf53,C10orf71,CHAT,DRGX,ERCC6,ERCC6-PGBD3,FAM170B,LRRC18,OGDHL,PARG,PGBD3,SLC18A3,VSTM4,WDFY4"
TCGA.D5.6536	10	50776239	62273929	3935	-0.6424	SMALL-LOSS	NONFOCAL	33	"A1CF,AGAP6,ANK3,ASAH2,ASAH2B,BICC1,C10orf53,CCDC6,CHAT,CISD1,CSTF2T,DKK1,FAM13C,FAM21A,IPMK,MBL2,MRLN,MSMB,MTRNR2L5,NCOA4,OGDHL,PARG,PCDH15,PHYHIPL,PRKG1,SGMS1,SLC16A9,SLC18A3,TFAM,TIMM23,TIMM23B,UBE2D1,ZWINT"
TCGA.AA.A02F.01A	10	51994136	59997431	101	-0.6489	SMALL-LOSS	NONFOCAL	12	"A1CF,ASAH2,ASAH2B,CSTF2T,DKK1,IPMK,MBL2,MTRNR2L5,PCDH15,PRKG1,SGMS1,ZWINT"
TCGA.A6.6650	10	53189076	78524135	7656	-0.5672	SMALL-LOSS	NONFOCAL	122	Too-Many
TCGA.AG.A020	10	55088288	64588106	3280	-0.7077	SMALL-LOSS	NONFOCAL	23	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,EGR2,FAM13C,IPMK,MRLN,MTRNR2L5,PCDH15,PHYHIPL,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365,ZWINT"
TCGA.G5.6572	10	55845525	131485204	26168	-0.6423	SMALL-LOSS	NONFOCAL	461	Too-Many
TCGA.5M.AAT5	10	57774134	107883945	16190	-0.7594	SMALL-LOSS	NONFOCAL	345	Too-Many
TCGA.AA.3544	10	57896072	74763306	5727	-0.7246	SMALL-LOSS	NONFOCAL	83	"ADAMTS14,ADO,AIFM2,ANAPC16,ANK3,ARID5B,ASCC1,ATOH7,BICC1,C10orf105,C10orf107,C10orf35,C10orf54,CCAR1,CCDC6,CDH23,CDK1,CHST3,CISD1,COL13A1,CTNNA3,DDIT4,DDX21,DDX50,DNA2,DNAJB12,DNAJC12,EGR2,EIF4EBP2,FAM13C,H2AFY2,HERC4,HK1,HKDC1,HNRNPH3,IPMK,JMJD1C,KIAA1279,LRRC20,LRRTM3,MCU,MICU1,MRLN,MYPN,NEUROG3,NODAL,NPFFR1,NRBF2,OIT3,PALD1,PBLD,PCBD1,PHYHIPL,PLA2G12B,PPA1,PRF1,PSAP,REEP3,RHOBTB1,RTKN2,RUFY2,SAR1A,SGPL1,SIRT1,SLC16A9,SLC25A16,SLC29A3,SPOCK2,SRGN,STOX1,SUPV3L1,TACR2,TBATA,TET1,TFAM,TMEM26,TSPAN15,TYSND1,UBE2D1,UNC5B,VPS26A,ZNF365,ZWINT"
TCGA.DY.A1DF	10	58846574	71136390	4065	-0.5473	SMALL-LOSS	NONFOCAL	46	"ADO,ANK3,ARID5B,ATOH7,BICC1,C10orf107,CCAR1,CCDC6,CDK1,CISD1,CTNNA3,DDX21,DDX50,DNA2,DNAJC12,EGR2,FAM13C,HERC4,HK1,HKDC1,HNRNPH3,IPMK,JMJD1C,KIAA1279,LRRTM3,MRLN,MYPN,NRBF2,PBLD,PHYHIPL,REEP3,RHOBTB1,RTKN2,RUFY2,SIRT1,SLC16A9,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,TFAM,TMEM26,UBE2D1,VPS26A,ZNF365"
TCGA.EF.5830	10	59834453	66228384	2156	-0.7422	SMALL-LOSS	NONFOCAL	23	"ADO,ANK3,ARID5B,BICC1,C10orf107,CCDC6,CDK1,CISD1,EGR2,FAM13C,IPMK,JMJD1C,MRLN,NRBF2,PHYHIPL,REEP3,RHOBTB1,RTKN2,SLC16A9,TFAM,TMEM26,UBE2D1,ZNF365"
TCGA.AA.A02F.01A	10	62444256	89552365	1217	-0.7546	SMALL-LOSS	NONFOCAL	150	Too-Many
TCGA.AA.A01T	10	65247018	70564119	1679	-0.7158	SMALL-LOSS	NONFOCAL	15	"ATOH7,CCAR1,CTNNA3,DNA2,DNAJC12,HERC4,HNRNPH3,LRRTM3,MYPN,PBLD,REEP3,RUFY2,SIRT1,SLC25A16,TET1"
TCGA.F4.6808	10	65931273	135434550	24244	-0.6875	SMALL-LOSS	NONFOCAL	465	Too-Many
TCGA.A6.3808.01A	10	70051691	70968338	156	-0.8706	SMALL-LOSS	NONFOCAL	14	"CCAR1,DDX21,DDX50,DNA2,HNRNPH3,KIAA1279,PBLD,RUFY2,SLC25A16,SRGN,STOX1,SUPV3L1,TET1,VPS26A"
TCGA.AG.A020	10	71322000	73426157	1009	-0.8818	SMALL-LOSS	NONFOCAL	21	"ADAMTS14,AIFM2,C10orf35,CDH23,COL13A1,EIF4EBP2,H2AFY2,LRRC20,NEUROG3,NODAL,NPFFR1,PALD1,PCBD1,PPA1,PRF1,SAR1A,SGPL1,SLC29A3,TBATA,TYSND1,UNC5B"
TCGA.DY.A1DF	10	71989305	135434550	22249	-0.5981	SMALL-LOSS	NONFOCAL	433	Too-Many
TCGA.EF.5830	10	81077764	103488167	7129	-0.7456	SMALL-LOSS	NONFOCAL	174	Too-Many
TCGA.D5.6536	10	81626661	96832056	5030	-0.6755	SMALL-LOSS	NONFOCAL	89	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ANXA11,ATAD1,BMPR1A,BTAF1,C10orf99,CCSER2,CDHR1,CEP55,CH25H,CPEB3,CYP26A1,CYP26C1,CYP2C18,CYP2C19,CYP2C8,CYP2C9,DYDC1,DYDC2,EXOC6,FAM213A,FAM25A,FAM35A,FAS,FFAR4,FGFBP3,FRA10AC1,GHITM,GLUD1,GRID1,HECTD2,HELLS,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,KLLN,LDB3,LGI1,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MARCH5,MAT1A,MINPP1,MMRN2,MYOF,NOC3L,NRG3,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PDE6C,PLAC9,PLCE1,PPP1R3C,PTEN,RBP4,RGR,RNLS,RPP30,SFTPD,SH2D4B,SLC16A12,SLC35G1,SNCG,STAMBPL1,TBC1D12,TMEM254,TNKS2,TSPAN14,WAPAL"
TCGA.CM.6675	10	82233364	107921552	8106	-1.0325	SMALL-LOSS	NONFOCAL	210	Too-Many
TCGA.DM.A1D9	10	82605063	89485394	2421	-0.7667	SMALL-LOSS	NONFOCAL	23	"ADIRF,AGAP11,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,GHITM,GLUD1,GRID1,LDB3,LRIT1,LRIT2,MINPP1,MMRN2,NRG3,NUTM2A,OPN4,PAPSS2,RGR,SNCG,WAPAL"
TCGA.D5.6532	10	82662105	105260228	6953	-0.8132	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AG.A020	10	83488791	96066340	4268	-0.7683	SMALL-LOSS	NONFOCAL	72	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ATAD1,BMPR1A,BTAF1,C10orf99,CCSER2,CDHR1,CEP55,CH25H,CPEB3,CYP26A1,CYP26C1,EXOC6,FAM25A,FAM35A,FAS,FFAR4,FGFBP3,FRA10AC1,GHITM,GLUD1,GRID1,HECTD2,HHEX,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF11,KIF20B,KLLN,LDB3,LGI1,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,LRIT1,LRIT2,MARCH5,MINPP1,MMRN2,MYOF,NRG3,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PDE6C,PLCE1,PPP1R3C,PTEN,RBP4,RGR,RNLS,RPP30,SLC16A12,SLC35G1,SNCG,STAMBPL1,TNKS2,WAPAL"
TCGA.AA.3526	10	83535159	112165766	9192	-0.6395	SMALL-LOSS	NONFOCAL	213	Too-Many
TCGA.AY.A54L.01A	10	83635089	89481424	190	-0.6798	SMALL-LOSS	NONFOCAL	23	"ADIRF,AGAP11,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,GHITM,GLUD1,GRID1,LDB3,LRIT1,LRIT2,MINPP1,MMRN2,NRG3,NUTM2A,OPN4,PAPSS2,RGR,SNCG,WAPAL"
TCGA.DM.A1D0	10	83668439	89262716	1981	-0.7826	SMALL-LOSS	NONFOCAL	21	"ADIRF,AGAP11,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,GHITM,GLUD1,GRID1,LDB3,LRIT1,LRIT2,MMRN2,NRG3,NUTM2A,OPN4,RGR,SNCG,WAPAL"
TCGA.AM.5820	10	84392384	88947060	1687	-0.6108	SMALL-LOSS	NONFOCAL	20	"ADIRF,AGAP11,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,GHITM,GLUD1,GRID1,LDB3,LRIT1,LRIT2,MMRN2,NRG3,OPN4,RGR,SNCG,WAPAL"
TCGA.AA.3952	10	84803820	89485294	1598	-0.6613	SMALL-LOSS	NONFOCAL	22	"ADIRF,AGAP11,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,GHITM,GLUD1,GRID1,LDB3,LRIT1,LRIT2,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,RGR,SNCG,WAPAL"
TCGA.AA.3556	10	85202436	89621060	1505	-0.7072	SMALL-LOSS	NONFOCAL	24	"ADIRF,AGAP11,ATAD1,BMPR1A,C10orf99,CCSER2,CDHR1,FAM25A,FAM35A,GHITM,GLUD1,GRID1,KLLN,LDB3,LRIT1,LRIT2,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,RGR,SNCG,WAPAL"
TCGA.AG.4021	10	86529605	102533207	4989	-0.7364	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.AA.3664	10	86638646	90420640	1153	-0.7261	SMALL-LOSS	NONFOCAL	20	"ADIRF,AGAP11,ATAD1,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,KLLN,LDB3,LIPJ,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,PTEN,RNLS,SNCG,WAPAL"
TCGA.AA.3860	10	86722074	99459307	3970	-0.6325	SMALL-LOSS	NONFOCAL	105	Too-Many
TCGA.AA.A01T	10	86900440	90233648	1023	-0.6659	SMALL-LOSS	NONFOCAL	19	"ADIRF,AGAP11,ATAD1,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,KLLN,LDB3,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,PTEN,RNLS,SNCG,WAPAL"
TCGA.EI.6513	10	87167532	110230049	7176	-0.7846	SMALL-LOSS	NONFOCAL	201	Too-Many
TCGA.AG.3598	10	87513388	93798879	2000	-0.993	SMALL-LOSS	NONFOCAL	47	"ACTA2,ADIRF,AGAP11,ANKRD1,ANKRD22,ATAD1,BMPR1A,BTAF1,CH25H,FAM25A,FAM35A,FAS,FGFBP3,GLUD1,GRID1,HECTD2,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MINPP1,MMRN2,NUTM2A,OPN4,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RNLS,RPP30,SLC16A12,SNCG,STAMBPL1,TNKS2,WAPAL"
TCGA.AA.3680	10	87931071	118771285	9874	-0.6975	SMALL-LOSS	NONFOCAL	243	Too-Many
TCGA.QG.A5YW	10	87951685	89741805	393	-1.3063	SMALL-LOSS	NONFOCAL	18	"ADIRF,AGAP11,ATAD1,BMPR1A,FAM25A,FAM35A,GLUD1,GRID1,KLLN,LDB3,MINPP1,MMRN2,NUTM2A,OPN4,PAPSS2,PTEN,SNCG,WAPAL"
TCGA.A6.2678	10	89485394	135434550	16394	-0.8301	SMALL-LOSS	NONFOCAL	330	Too-Many
TCGA.G4.6322	10	89778862	135434550	16350	-0.8196	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DM.A1D9	10	89878441	135434550	16266	-0.747	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AY.A54L.01A	10	90034672	108716204	1968	-0.6696	SMALL-LOSS	NONFOCAL	183	Too-Many
TCGA.AA.3556	10	90213461	112056097	6777	-0.7103	SMALL-LOSS	NONFOCAL	187	Too-Many
TCGA.DM.A1D0	10	90295772	109131721	5741	-0.7509	SMALL-LOSS	NONFOCAL	183	Too-Many
TCGA.AM.5820	10	90602627	108660696	5420	-0.6988	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AA.A02F.01A	10	90681033	102738554	1127	-0.727	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.A6.3808.01A	10	90773869	92616873	74	-0.6773	SMALL-LOSS	NONFOCAL	12	"CH25H,FAS,HTR7,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,LIPA,PANK1,SLC16A12"
TCGA.AA.3952	10	90904075	135434550	15865	-0.6384	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.DM.A1HA	10	94008579	135434550	14893	-0.9745	SMALL-LOSS	NONFOCAL	297	Too-Many
TCGA.AA.3696	10	95221779	115431239	6549	-0.8515	SMALL-LOSS	NONFOCAL	165	Too-Many
TCGA.AG.A020	10	96355065	135434550	14217	-0.8207	SMALL-LOSS	NONFOCAL	278	Too-Many
TCGA.D5.6536	10	99949259	120256729	6839	-0.6904	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.AG.3602	10	101386466	135434550	12565	-0.753	SMALL-LOSS	NONFOCAL	225	Too-Many
TCGA.AG.4021	10	102536663	115045235	4035	-0.7411	SMALL-LOSS	NONFOCAL	83	"ACSL5,ACTR1A,ADD3,ADRA2A,ARL3,AS3MT,BBIP1,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CNNM2,COL17A1,CUEDC2,CYP17A1,DPCD,DUSP5,ELOVL3,FAM178A,FBXL15,FBXW4,FGF8,GBF1,GPAM,GSTO1,GSTO2,HPS6,INA,ITPRIP,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,MXI1,NEURL1,NFKB2,NOLC1,NPM3,NT5C2,OBFC1,PAX2,PCGF6,PDCD11,PDCD4,PDZD7,PITX3,POLL,PPRC1,PSD,RBM20,RPEL1,SEMA4G,SFR1,SFXN2,SFXN3,SH3PXD2A,SHOC2,SLK,SMC3,SMNDC1,SORCS1,SORCS3,SUFU,TAF5,TCF7L2,TECTB,TLX1,TMEM180,TRIM8,USMG5,VTI1A,WBP1L,XPNPEP1,ZDHHC6"
TCGA.AA.A02F.01A	10	102743030	106207419	499	-0.7839	SMALL-LOSS	NONFOCAL	62	"ACTR1A,ARL3,AS3MT,BTRC,C10orf2,C10orf32,C10orf76,C10orf95,CALHM1,CALHM2,CALHM3,CFAP43,CFAP58,CNNM2,COL17A1,CUEDC2,CYP17A1,DPCD,ELOVL3,FBXL15,FBXW4,FGF8,GBF1,GSTO1,GSTO2,HPS6,INA,ITPRIP,KAZALD1,KCNIP2,LBX1,LDB1,LZTS2,MGEA5,MRPL43,NEURL1,NFKB2,NOLC1,NPM3,NT5C2,OBFC1,PCGF6,PDCD11,PDZD7,PITX3,POLL,PPRC1,PSD,RPEL1,SEMA4G,SFR1,SFXN2,SFXN3,SH3PXD2A,SLK,SUFU,TAF5,TLX1,TMEM180,TRIM8,USMG5,WBP1L"
TCGA.A6.6138	10	111276963	120428801	3349	-0.5152	SMALL-LOSS	NONFOCAL	50	"ABLIM1,ACSL5,ADD3,ADRA2A,ADRB1,AFAP1L2,ATRNL1,BBIP1,C10orf82,CASP7,CCDC172,CCDC186,DCLRE1A,DUSP5,EMX2,ENO4,FAM160B1,FAM204A,GFRA1,GPAM,HABP2,HSPA12A,KCNK18,KIAA1598,MXI1,NHLRC2,NRAP,PDCD4,PDZD8,PLEKHS1,PNLIP,PNLIPRP1,PNLIPRP2,PNLIPRP3,PRLHR,RAB11FIP2,RBM20,SHOC2,SLC18A2,SMC3,SMNDC1,TCF7L2,TDRD1,TECTB,TRUB1,VAX1,VTI1A,VWA2,XPNPEP1,ZDHHC6"
TCGA.AA.A02O	10	113908059	115858290	745	-0.7733	SMALL-LOSS	NONFOCAL	13	"ACSL5,ADRB1,CASP7,DCLRE1A,GPAM,HABP2,NHLRC2,NRAP,PLEKHS1,TCF7L2,TECTB,VTI1A,ZDHHC6"
TCGA.AG.3909.01A	10	119307564	121541116	105	-0.6135	SMALL-LOSS	NONFOCAL	15	"BAG3,CACUL1,EIF3A,EMX2,FAM204A,FAM45A,GRK5,INPP5F,NANOS1,PRDX3,PRLHR,RAB11FIP2,RGS10,SFXN4,TIAL1"
TCGA.AA.3692	10	122887046	135434550	5224	-0.7676	SMALL-LOSS	NONFOCAL	78	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AG.3887	10	122887046	135434550	5209	-0.8394	SMALL-LOSS	NONFOCAL	78	"ACADSB,ADAM12,ADAM8,ADGRA1,ARMS2,ATE1,BCCIP,BNIP3,BTBD16,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DMBT1,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FGFR2,FOXI2,FUOM,GLRX3,GPR26,HMX2,HMX3,HTRA1,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,NSMCE4A,OAT,PAOX,PLEKHA1,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TACC2,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AA.A02F.01A	10	124457227	135440021	403	-0.5257	SMALL-LOSS	NONFOCAL	70	"ACADSB,ADAM12,ADAM8,ADGRA1,BCCIP,BNIP3,BUB3,C10orf120,C10orf88,C10orf90,C10orf91,CALY,CFAP46,CHST15,CLRN3,CPXM2,CTBP2,CUZD1,CYP2E1,DHX32,DOCK1,DPYSL4,EBF3,ECHS1,EDRF1,FAM175B,FAM196A,FAM24A,FAM24B,FAM53B,FANK1,FOXI2,FRG2B,FUOM,GLRX3,GPR26,HMX2,HMX3,IKZF5,INPP5A,JAKMIP3,KNDC1,LHPP,LRRC27,METTL10,MGMT,MKI67,MMP21,MTG1,NKX1-2,NKX6-2,NPS,OAT,PAOX,PPP2R2D,PRAP1,PSTK,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TEX36,TUBGCP2,UROS,UTF1,VENTX,ZNF511,ZRANB1"
TCGA.AF.3913	10	124817706	128146147	1365	-0.6398	SMALL-LOSS	NONFOCAL	24	"ACADSB,ADAM12,BCCIP,BUB3,C10orf90,CHST15,CPXM2,CTBP2,DHX32,EDRF1,FAM175B,FAM53B,FANK1,GPR26,HMX2,HMX3,LHPP,METTL10,MMP21,NKX1-2,OAT,TEX36,UROS,ZRANB1"
TCGA.A6.5665	10	128494764	135434550	2855	-0.5995	SMALL-LOSS	NONFOCAL	38	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FAM196A,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.A6.5661	10	128929405	135434550	2695	-0.7284	SMALL-LOSS	NONFOCAL	38	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FAM196A,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.A6.2672	10	129009159	135434550	2672	-0.5908	SMALL-LOSS	NONFOCAL	37	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CLRN3,CYP2E1,DOCK1,DPYSL4,EBF3,ECHS1,FOXI2,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,NPS,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.CK.5914.01A	10	129854332	134121034	122	-0.7477	SMALL-LOSS	NONFOCAL	11	"BNIP3,DPYSL4,EBF3,GLRX3,JAKMIP3,MGMT,MKI67,PPP2R2D,PTPRE,STK32C,TCERG1L"
TCGA.AA.3861.01A	10	129877785	135440021	282	-0.6348	SMALL-LOSS	NONFOCAL	34	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,EBF3,ECHS1,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PTPRE,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A00N.01A	10	129908591	134755436	199	-1.0564	SMALL-LOSS	NONFOCAL	16	"BNIP3,C10orf91,CFAP46,DPYSL4,EBF3,GLRX3,INPP5A,JAKMIP3,LRRC27,MGMT,MKI67,NKX6-2,PPP2R2D,PWWP2B,STK32C,TCERG1L"
TCGA.AG.3909.01A	10	129908591	135440021	226	-0.7549	SMALL-LOSS	NONFOCAL	33	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,EBF3,ECHS1,FRG2B,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MKI67,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AD.6899	10	130091723	135434550	2174	-0.5329	SMALL-LOSS	NONFOCAL	31	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,EBF3,ECHS1,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.G5.6572	10	131537950	135434550	1461	-0.7116	SMALL-LOSS	NONFOCAL	31	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,EBF3,ECHS1,FUOM,GLRX3,INPP5A,JAKMIP3,KNDC1,LRRC27,MGMT,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A010.01A	10	133106424	134646815	103	-0.9936	SMALL-LOSS	NONFOCAL	12	"BNIP3,C10orf91,CFAP46,DPYSL4,INPP5A,JAKMIP3,LRRC27,NKX6-2,PPP2R2D,PWWP2B,STK32C,TCERG1L"
TCGA.A6.3808.01A	10	133106424	135440021	290	-1.1866	SMALL-LOSS	NONFOCAL	29	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FRG2B,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TCERG1L,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.A6.2671	10	133473979	135434550	472	-0.727	SMALL-LOSS	NONFOCAL	27	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AF.2692	10	133649737	135375199	390	-0.5731	SMALL-LOSS	NONFOCAL	27	"ADAM8,ADGRA1,BNIP3,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PPP2R2D,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.3524	10	133942628	135434550	315	-0.8506	SMALL-LOSS	NONFOCAL	25	"ADAM8,ADGRA1,C10orf91,CALY,CFAP46,CYP2E1,DPYSL4,ECHS1,FUOM,INPP5A,JAKMIP3,KNDC1,LRRC27,MTG1,NKX6-2,PAOX,PRAP1,PWWP2B,SPRN,STK32C,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AG.4009.01A	10	134218079	135440021	132	-0.6166	SMALL-LOSS	NONFOCAL	22	"ADAM8,ADGRA1,C10orf91,CALY,CFAP46,CYP2E1,ECHS1,FRG2B,FUOM,INPP5A,KNDC1,MTG1,NKX6-2,PAOX,PRAP1,PWWP2B,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.3980.01A	10	134754432	135440021	127	-0.5415	SMALL-LOSS	NONFOCAL	18	"ADAM8,ADGRA1,CALY,CFAP46,CYP2E1,ECHS1,FRG2B,FUOM,KNDC1,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,UTF1,VENTX,ZNF511"
TCGA.AA.A00N.01A	10	135096533	135440021	83	-1.046	SMALL-LOSS	NONFOCAL	12	"CALY,CYP2E1,ECHS1,FRG2B,FUOM,MTG1,PAOX,PRAP1,SPRN,SYCE1,TUBGCP2,ZNF511"
TCGA.AG.3909.01A	11	205265	498426	68	-0.5293	SMALL-LOSS	NONFOCAL	16	"ANO9,ATHL1,B4GALNT4,BET1L,IFITM1,IFITM2,IFITM3,IFITM5,NLRP6,PKP3,PSMD13,PTDSS2,RIC8A,RNH1,SIGIRR,SIRT3"
TCGA.D5.5538	11	206766	691028	89	-0.6575	SMALL-LOSS	NONFOCAL	26	"ANO9,ATHL1,B4GALNT4,BET1L,CDHR5,DEAF1,DRD4,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,LMNTD2,LRRC56,NLRP6,PHRF1,PKP3,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,SCT,SIGIRR,SIRT3"
TCGA.AA.A01R	11	206766	2717050	468	-0.5806	SMALL-LOSS	NONFOCAL	75	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CD151,CD81,CDHR5,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.A6.2672	11	206766	3446078	668	-0.6239	SMALL-LOSS	NONFOCAL	85	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,OSBPL5,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RIC8A,RNH1,RPLP2,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.A6.5665	11	206766	4148947	843	-0.9042	SMALL-LOSS	NONFOCAL	93	"ANO9,AP2A2,ART1,ART5,ASCL2,ATHL1,B4GALNT4,BET1L,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,NUP98,OSBPL5,PANO1,PDDC1,PGAP2,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RHOG,RIC8A,RNH1,RPLP2,RRM1,SCT,SIGIRR,SIRT3,SLC22A18,SLC22A18AS,SLC25A22,STIM1,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.A6.5661	11	206766	4793881	1153	-0.6808	SMALL-LOSS	NONFOCAL	106	Too-Many
TCGA.AG.A01Y	11	206766	7879803	2608	-0.8724	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.CM.6675	11	206766	7981520	2643	-1.0841	SMALL-LOSS	NONFOCAL	201	Too-Many
TCGA.EI.6509	11	206766	10615472	3500	-0.8187	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.F5.6813	11	206766	20281543	7584	-0.52	SMALL-LOSS	NONFOCAL	294	Too-Many
TCGA.AA.3860	11	206766	68890389	20442	-0.6527	SMALL-LOSS	NONFOCAL	812	Too-Many
TCGA.AA.3952	11	206766	134944769	43659	-0.6021	SMALL-LOSS	NONFOCAL	1264	Too-Many
TCGA.AG.3581	11	206766	134944769	43693	-0.6018	SMALL-LOSS	NONFOCAL	1264	Too-Many
TCGA.DY.A1DF	11	206766	134944769	43683	-0.5779	SMALL-LOSS	NONFOCAL	1264	Too-Many
TCGA.A6.3810.01A	11	238941	1606066	432	-0.5909	SMALL-LOSS	NONFOCAL	48	"ANO9,AP2A2,ATHL1,B4GALNT4,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,DUSP8,EPS8L2,HRAS,IFITM1,IFITM2,IFITM3,IFITM5,IRF7,KRTAP5-1,LMNTD2,LRRC56,MOB2,MUC2,MUC5AC,MUC5B,MUC6,NLRP6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80,TOLLIP,TSPAN4"
TCGA.CK.5914.01A	11	251803	2972978	588	-0.5252	SMALL-LOSS	NONFOCAL	77	"ANO9,AP2A2,ASCL2,ATHL1,B4GALNT4,BRSK2,C11orf21,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,HRAS,IFITM1,IFITM10,IFITM2,IFITM3,IFITM5,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LMNTD2,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NLRP6,PANO1,PDDC1,PHLDA2,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PSMD13,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4"
TCGA.AG.4009.01A	11	372612	837208	109	-0.6464	SMALL-LOSS	NONFOCAL	28	"ANO9,B4GALNT4,CD151,CDHR5,CEND1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IRF7,LMNTD2,LRRC56,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80"
TCGA.AA.3861.01A	11	379839	1580088	221	-0.7664	SMALL-LOSS	NONFOCAL	40	"ANO9,AP2A2,B4GALNT4,BRSK2,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,DUSP8,EPS8L2,HRAS,IRF7,LMNTD2,LRRC56,MOB2,MUC2,MUC5AC,MUC5B,MUC6,PANO1,PDDC1,PHRF1,PIDD1,PKP3,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SIGIRR,SLC25A22,TALDO1,TMEM80,TOLLIP,TSPAN4"
TCGA.A6.3808.01A	11	433778	639414	78	-1.0959	SMALL-LOSS	NONFOCAL	12	"ANO9,CDHR5,DRD4,HRAS,IRF7,LMNTD2,LRRC56,PHRF1,PTDSS2,RASSF7,RNH1,SCT"
TCGA.AA.A00N.01A	11	487359	1000385	181	-0.5519	SMALL-LOSS	NONFOCAL	28	"AP2A2,CD151,CDHR5,CEND1,CHID1,CRACR2B,DEAF1,DRD4,EPS8L2,HRAS,IRF7,LMNTD2,LRRC56,PANO1,PDDC1,PHRF1,PIDD1,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RPLP2,SCT,SLC25A22,TALDO1,TMEM80,TSPAN4"
TCGA.AA.A02E.01A	11	618610	3707171	175	-0.558	SMALL-LOSS	NONFOCAL	67	"AP2A2,ART1,ART5,ASCL2,BRSK2,C11orf21,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CHRNA10,CRACR2B,CTSD,DEAF1,DRD4,DUSP8,EPS8L2,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRGPRE,MRGPRG,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,NUP98,OSBPL5,PANO1,PDDC1,PHLDA2,PIDD1,PNPLA2,POLR2L,RPLP2,SCT,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4,ZNF195"
TCGA.AA.3939.01A	11	1016370	2946223	275	-0.6146	SMALL-LOSS	NONFOCAL	36	"ASCL2,BRSK2,C11orf21,CD81,CDKN1C,CTSD,DUSP8,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,SLC22A18,SLC22A18AS,SYT8,TH,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSSC4"
TCGA.A6.3808.01A	11	1284221	2970395	209	-1.1829	SMALL-LOSS	NONFOCAL	34	"ASCL2,BRSK2,C11orf21,CD81,CDKN1C,CTSD,DUSP8,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LSP1,MOB2,MRPL23,NAP1L4,PHLDA2,SLC22A18,SLC22A18AS,SYT8,TH,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSSC4"
TCGA.AA.3861.01A	11	1651159	3239153	168	-0.9235	SMALL-LOSS	NONFOCAL	28	"ASCL2,C11orf21,CARS,CD81,CDKN1C,CTSD,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-5,KRTAP5-6,LSP1,MRPL23,NAP1L4,OSBPL5,PHLDA2,SLC22A18,SLC22A18AS,SYT8,TH,TNNI2,TNNT3,TRPM5,TSPAN32,TSSC4"
TCGA.AA.3862.01A	11	1651159	3680394	193	-0.6623	SMALL-LOSS	NONFOCAL	33	"ART1,ART5,ASCL2,C11orf21,CARS,CD81,CDKN1C,CTSD,HOTS,IFITM10,IGF2,INS,INS-IGF2,KCNQ1,KRTAP5-5,KRTAP5-6,LSP1,MRGPRE,MRGPRG,MRPL23,NAP1L4,OSBPL5,PHLDA2,SLC22A18,SLC22A18AS,SYT8,TH,TNNI2,TNNT3,TRPM5,TSPAN32,TSSC4,ZNF195"
TCGA.AA.3941	11	4236708	5598242	754	-0.7651	SMALL-LOSS	NONFOCAL	46	"C11orf40,HBB,HBD,HBE1,HBG1,HBG2,MMP26,OR51A2,OR51A4,OR51A7,OR51B2,OR51B4,OR51B5,OR51B6,OR51D1,OR51E1,OR51E2,OR51F1,OR51F2,OR51G1,OR51G2,OR51I1,OR51I2,OR51L1,OR51M1,OR51Q1,OR51S1,OR51T1,OR51V1,OR52A1,OR52A5,OR52B4,OR52D1,OR52E2,OR52H1,OR52I1,OR52I2,OR52J3,OR52K1,OR52K2,OR52M1,OR52R1,TRIM21,TRIM68,UBQLN3,UBQLNL"
TCGA.EI.6509	11	10624165	18940321	3332	-0.7915	SMALL-LOSS	NONFOCAL	60	"ABCC8,ARNTL,BTBD10,C11orf58,CALCA,CALCB,COPB1,CSNK2A3,CTR9,CYP2R1,DKK3,EIF4G2,FAR1,GALNT18,GTF2H1,HPS5,IGSF22,INSC,KCNC1,KCNJ11,LDHA,LDHAL6A,LDHC,LOC102724957,MICAL2,MICALCL,MRGPRX3,MRGPRX4,MRVI1,MYOD1,NCR3LG1,NUCB2,OTOG,PARVA,PDE3B,PIK3C2A,PLEKHA7,PSMA1,PTH,PTPN5,RASSF10,RPS13,RRAS2,SAA1,SAA2,SAA2-SAA4,SAA4,SAAL1,SERGEF,SOX6,SPON1,SPTY2D1,TEAD1,TMEM86A,TPH1,TSG101,UEVLD,USH1C,USP47,ZBED5"
TCGA.EI.6509	11	18972151	55065191	10621	-0.7827	SMALL-LOSS	NONFOCAL	146	Too-Many
TCGA.F5.6813	11	20285787	46570858	9285	-0.538	SMALL-LOSS	NONFOCAL	95	"ABTB2,ACCS,ACCSL,ALKBH3,ALX4,AMBRA1,ANO3,ANO5,API5,APIP,ARL14EP,BBOX1,BDNF,C11orf74,C11orf91,C11orf94,C11orf96,CAPRIN1,CAT,CCDC179,CCDC34,CCDC73,CD44,CD59,CD82,CHRM4,CHST1,COMMD9,CREB3L1,CRY2,CSTF3,DCDC1,DCDC5,DEPDC7,DGKZ,DNAJC24,EHF,EIF3M,ELF5,ELP4,EXT2,FANCF,FBXO3,FIBIN,FJX1,FSHB,GAS2,GYLTL1B,HIPK3,HSD17B12,HTATIP2,IMMP1L,KCNA4,KIAA1549L,KIF18A,LDLRAD3,LGR4,LIN7C,LMO2,LRRC4C,LUZP2,MAPK8IP1,MDK,METTL15,MPPED2,MUC15,NAT10,NELL1,PAMR1,PAX6,PDHX,PEX16,PHF21A,PRDM11,PRMT3,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC17A6,SLC1A2,SLC35C1,SLC5A12,SLC6A5,SVIP,SYT13,TCP11L1,TP53I11,TRAF6,TRIM44,TSPAN18,TTC17,WT1"
TCGA.AA.3941	11	20839873	28967904	2915	-1.2051	SMALL-LOSS	NONFOCAL	19	"ANO3,ANO5,BBOX1,BDNF,CCDC179,CCDC34,FANCF,FIBIN,GAS2,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AA.3850	11	20839873	31752870	3654	-0.75555	SMALL-LOSS	NONFOCAL	28	"ANO3,ANO5,ARL14EP,BBOX1,BDNF,CCDC179,CCDC34,DCDC1,DCDC5,DNAJC24,ELP4,FANCF,FIBIN,FSHB,GAS2,IMMP1L,KCNA4,KIF18A,LGR4,LIN7C,LUZP2,METTL15,MPPED2,MUC15,NELL1,SLC17A6,SLC5A12,SVIP"
TCGA.AG.A01Y	11	25227711	29122701	1217	-0.7092	SMALL-LOSS	NONFOCAL	11	"ANO3,BBOX1,BDNF,CCDC34,FIBIN,KIF18A,LGR4,LIN7C,METTL15,MUC15,SLC5A12"
TCGA.G4.6322	11	26592684	29808548	895	-0.5582	SMALL-LOSS	NONFOCAL	11	"ANO3,BBOX1,BDNF,CCDC34,FIBIN,KIF18A,LGR4,LIN7C,METTL15,MUC15,SLC5A12"
TCGA.AA.3680	11	30131973	42702951	4393	-0.7041	SMALL-LOSS	NONFOCAL	45	"ABTB2,APIP,ARL14EP,C11orf74,C11orf91,CAPRIN1,CAT,CCDC73,CD44,CD59,COMMD9,CSTF3,DCDC1,DCDC5,DEPDC7,DNAJC24,EHF,EIF3M,ELF5,ELP4,FBXO3,FJX1,FSHB,HIPK3,IMMP1L,KIAA1549L,LDLRAD3,LMO2,LRRC4C,MPPED2,NAT10,PAMR1,PAX6,PDHX,PRR5L,PRRG4,QSER1,RAG1,RAG2,RCN1,SLC1A2,TCP11L1,TRAF6,TRIM44,WT1"
TCGA.A6.5656	11	34827316	68678961	7698	-0.7747	SMALL-LOSS	NONFOCAL	462	Too-Many
TCGA.A6.5661	11	43955762	48044630	1135	-0.5407	SMALL-LOSS	NONFOCAL	53	"ACCS,ACCSL,ACP2,AGBL2,ALX4,AMBRA1,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,DDB2,DGKZ,EXT2,F2,FAM180B,FNBP4,GYLTL1B,HARBI1,KBTBD4,LRP4,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TSPAN18,ZNF408"
TCGA.AA.3850	11	48268481	56877489	808	-0.78605	SMALL-LOSS	NONFOCAL	61	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR4X1,OR5AK2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AA.3844	11	48297664	56603001	709	-0.6101	SMALL-LOSS	NONFOCAL	59	"FOLH1,OR10AG1,OR4A15,OR4A16,OR4A47,OR4A5,OR4C11,OR4C12,OR4C13,OR4C15,OR4C16,OR4C3,OR4C45,OR4C46,OR4C6,OR4P4,OR4S1,OR4S2,OR5AP2,OR5AR1,OR5AS1,OR5D13,OR5D14,OR5D16,OR5D18,OR5F1,OR5I1,OR5J2,OR5L1,OR5L2,OR5M1,OR5M10,OR5M11,OR5M3,OR5M8,OR5M9,OR5R1,OR5T1,OR5T2,OR5T3,OR5W2,OR8H1,OR8H2,OR8H3,OR8I2,OR8J1,OR8J3,OR8K1,OR8K3,OR8K5,OR8U1,OR8U8,OR9G1,OR9G4,OR9G9,TRIM48,TRIM49B,TRIM51,TRIM64C"
TCGA.AG.3611.01A	11	49168260	60906154	463	-0.6862	SMALL-LOSS	NONFOCAL	138	Too-Many
TCGA.A6.2671	11	51192869	134944769	26274	-0.6265	SMALL-LOSS	NONFOCAL	833	Too-Many
TCGA.DM.A1D6	11	51192869	134944769	26296	-0.8456	SMALL-LOSS	NONFOCAL	833	Too-Many
TCGA.AG.3594	11	51195050	67472144	2805	-0.5935	SMALL-LOSS	NONFOCAL	364	Too-Many
TCGA.AA.A02F.01A	11	55032509	65983956	1253	-0.7398	SMALL-LOSS	NONFOCAL	304	Too-Many
TCGA.AA.A00D.01A	11	55110705	55606196	17	-0.6539	SMALL-LOSS	NONFOCAL	13	"OR4A15,OR4A16,OR4C11,OR4C15,OR4C16,OR4C6,OR4P4,OR4S2,OR5D13,OR5D14,OR5D18,OR5L1,OR5L2"
TCGA.EI.6509	11	55620698	66842468	2550	-0.82	SMALL-LOSS	NONFOCAL	321	Too-Many
TCGA.D5.6536	11	56074944	134944769	25977	-0.6886	SMALL-LOSS	NONFOCAL	800	Too-Many
TCGA.AA.3941	11	56248135	59140144	774	-0.6115	SMALL-LOSS	NONFOCAL	56	"APLNR,BTBD18,C11orf31,CLP1,CNTF,CTNND1,DTX4,FAM111A,FAM111B,GLYAT,GLYATL1,GLYATL2,LPXN,LRRC55,MED19,MPEG1,OR10Q1,OR10W1,OR1S1,OR1S2,OR5AK2,OR5AN1,OR5AP2,OR5AR1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR5M1,OR5M10,OR5M11,OR5M8,OR6Q1,OR9G1,OR9G4,OR9G9,OR9I1,OR9Q1,OR9Q2,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5,ZFP91"
TCGA.F5.6813	11	56413561	58901762	678	-0.5183	SMALL-LOSS	NONFOCAL	47	"APLNR,BTBD18,C11orf31,CLP1,CNTF,CTNND1,FAM111B,GLYAT,GLYATL1,GLYATL2,LPXN,LRRC55,MED19,OR10Q1,OR10W1,OR1S1,OR1S2,OR5AK2,OR5AR1,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9G1,OR9G4,OR9G9,OR9I1,OR9Q1,OR9Q2,P2RX3,PRG2,PRG3,RTN4RL2,SERPING1,SLC43A1,SLC43A3,SMTNL1,SSRP1,TIMM10,TMX2,TNKS1BP1,UBE2L6,YPEL4,ZDHHC5,ZFP91"
TCGA.AG.3591	11	56587405	134944769	25839	-0.7362	SMALL-LOSS	NONFOCAL	783	Too-Many
TCGA.DC.5337	11	57352561	58347764	267	-0.6819	SMALL-LOSS	NONFOCAL	24	"BTBD18,C11orf31,CLP1,CTNND1,LPXN,MED19,OR10Q1,OR10W1,OR1S1,OR1S2,OR5B12,OR5B17,OR5B2,OR5B21,OR5B3,OR6Q1,OR9I1,OR9Q1,OR9Q2,SERPING1,TMX2,YPEL4,ZDHHC5,ZFP91"
TCGA.CM.6172	11	58648035	60400153	484	-0.6772	SMALL-LOSS	NONFOCAL	31	"DTX4,FAM111A,FAM111B,GIF,GLYATL1,MPEG1,MRPL16,MS4A1,MS4A12,MS4A13,MS4A14,MS4A2,MS4A3,MS4A4A,MS4A5,MS4A6A,MS4A6E,MS4A7,OOSP2,OR10V1,OR4D10,OR4D11,OR4D6,OR4D9,OR5A1,OR5A2,OR5AN1,OSBP,PATL1,STX3,TCN1"
TCGA.DM.A288	11	58937716	85390731	7010	-0.5256	SMALL-LOSS	NONFOCAL	402	Too-Many
TCGA.CA.5796	11	59348379	73632693	3037	-0.7663	SMALL-LOSS	NONFOCAL	327	Too-Many
TCGA.A6.5661	11	60559851	71481662	2309	-0.6596	SMALL-LOSS	NONFOCAL	275	Too-Many
TCGA.AG.3611.01A	11	61067553	62158956	187	-0.6167	SMALL-LOSS	NONFOCAL	27	"ASRGL1,BEST1,CPSF7,CYB561A3,DAGLA,DDB1,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MYRF,PPP1R32,RAB3IL1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SYT7,TKFC,TMEM138,TMEM216,TMEM258"
TCGA.AA.A00J.01A	11	61089028	62300564	195	-0.7156	SMALL-LOSS	NONFOCAL	29	"AHNAK,ASRGL1,BEST1,CPSF7,CYB561A3,DAGLA,DDB1,FADS1,FADS2,FADS3,FEN1,FTH1,INCENP,LRRC10B,MYRF,PPP1R32,RAB3IL1,SCGB1A1,SCGB1D1,SCGB1D2,SCGB1D4,SCGB2A1,SCGB2A2,SDHAF2,SYT7,TKFC,TMEM138,TMEM216,TMEM258"
TCGA.DT.5265	11	61400153	68598533	1205	-0.5502	SMALL-LOSS	NONFOCAL	227	Too-Many
TCGA.CM.6172	11	61518236	134944769	24529	-0.7063	SMALL-LOSS	NONFOCAL	683	Too-Many
TCGA.AG.3602	11	61725497	66061232	838	-0.747	SMALL-LOSS	NONFOCAL	154	Too-Many
TCGA.AG.3611.01A	11	62300564	77411728	1859	-0.5224	SMALL-LOSS	NONFOCAL	306	Too-Many
TCGA.AA.A017.01A	11	62303378	62655570	146	-0.5671	SMALL-LOSS	NONFOCAL	28	"AHNAK,B3GAT3,BSCL2,C11orf98,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,NXF1,POLR2G,ROM1,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.CK.5914.01A	11	62338395	62677161	158	-0.7305	SMALL-LOSS	NONFOCAL	28	"B3GAT3,BSCL2,C11orf98,CHRM1,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,NXF1,POLR2G,ROM1,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AG.A025.01A	11	62338395	62746923	150	-0.6962	SMALL-LOSS	NONFOCAL	29	"B3GAT3,BSCL2,C11orf98,CHRM1,EEF1G,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,NXF1,POLR2G,ROM1,SLC22A6,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,TUT1,UBXN1,UQCC3,WDR74,ZBTB3"
TCGA.AA.A00N.01A	11	62361704	62484409	80	-1.0135	SMALL-LOSS	NONFOCAL	15	"B3GAT3,BSCL2,C11orf98,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,ROM1,UBXN1,UQCC3"
TCGA.AG.3909.01A	11	62361704	62491726	82	-0.8076	SMALL-LOSS	NONFOCAL	15	"B3GAT3,BSCL2,C11orf98,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,MTA2,ROM1,UBXN1,UQCC3"
TCGA.AA.A004.01A	11	62369766	62569402	96	-0.5416	SMALL-LOSS	NONFOCAL	21	"B3GAT3,BSCL2,C11orf98,EML3,GANAB,GNG3,HNRNPUL2,INTS5,LBHD1,LRRN4CL,METTL12,NXF1,POLR2G,ROM1,TAF6L,TMEM179B,TMEM223,TTC9C,UBXN1,UQCC3,ZBTB3"
TCGA.DM.A1D0	11	62462311	63537508	194	-0.794	SMALL-LOSS	NONFOCAL	28	"ATL3,BSCL2,C11orf95,CHRM1,GNG3,HNRNPUL2,HRASLS2,HRASLS5,LGALS12,NXF1,PLA2G16,POLR2G,RARRES3,RTN3,SLC22A10,SLC22A24,SLC22A25,SLC22A6,SLC22A8,SLC22A9,SLC3A2,STX5,TAF6L,TMEM179B,TMEM223,TTC9C,WDR74,ZBTB3"
TCGA.AA.A00N.01A	11	63304249	64089011	181	-0.6831	SMALL-LOSS	NONFOCAL	30	"ATL3,BAD,C11orf84,C11orf95,COX8A,DNAJC4,ESRRA,FERMT3,FKBP2,FLRT1,GPR137,HRASLS2,KCNK4,MACROD1,MARK2,NAA40,NUDT22,OTUB1,PLA2G16,PLCB3,PPP1R14B,PRDX5,RARRES3,RCOR2,RTN3,STIP1,TEX40,TRMT112,TRPT1,VEGFB"
TCGA.AA.A01Q.01A	11	63521057	64060440	122	-0.6077	SMALL-LOSS	NONFOCAL	22	"BAD,C11orf84,C11orf95,COX8A,DNAJC4,FERMT3,FKBP2,FLRT1,GPR137,KCNK4,MACROD1,MARK2,NAA40,NUDT22,OTUB1,PLCB3,PPP1R14B,RCOR2,RTN3,STIP1,TRPT1,VEGFB"
TCGA.A6.3808.01A	11	63676318	66243040	776	-0.5265	SMALL-LOSS	NONFOCAL	108	Too-Many
TCGA.DM.A1D0	11	63774300	67442660	517	-0.7637	SMALL-LOSS	NONFOCAL	148	Too-Many
TCGA.AG.4009.01A	11	63996702	64074604	41	-0.5918	SMALL-LOSS	NONFOCAL	11	"BAD,DNAJC4,ESRRA,FKBP2,GPR137,KCNK4,NUDT22,PLCB3,PPP1R14B,TEX40,VEGFB"
TCGA.D5.6932	11	64433077	66183922	266	-0.6787	SMALL-LOSS	NONFOCAL	78	"AP5B1,ARL2,ATG2A,B4GAT1,BANF1,BATF2,BRMS1,C11orf68,C11orf85,CAPN1,CATSPER1,CCDC85B,CD248,CDC42BPG,CDC42EP2,CDCA5,CFL1,CNIH2,CST6,CTSW,DPF2,DRAP1,EFEMP2,EHBP1L1,EHD1,EIF1AD,FAM89B,FAU,FIBP,FOSL1,FRMD8,GAL3ST3,GPHA2,KAT5,KCNK7,KLC2,LTBP3,MAP3K11,MAP4K2,MEN1,MRPL49,MUS81,NAALADL1,NRXN2,OVOL1,PACS1,PCNXL3,POLA2,PPP2R5B,PYGM,RAB1B,RASGRP2,RELA,RIN1,RNASEH2C,SAC3D1,SART1,SCYL1,SF1,SF3B2,SIPA1,SLC22A20,SLC25A45,SLC29A2,SNX15,SNX32,SPDYC,SSSCA1,SYVN1,TIGD3,TM7SF2,TMEM151A,TMEM262,TSGA10IP,VPS51,YIF1A,ZFPL1,ZNHIT2"
TCGA.AA.A00N.01A	11	64781622	65819839	336	-0.6042	SMALL-LOSS	NONFOCAL	54	"AP5B1,ARL2,BANF1,C11orf68,CAPN1,CATSPER1,CCDC85B,CDC42EP2,CDCA5,CFL1,CST6,CTSW,DPF2,DRAP1,EFEMP2,EHBP1L1,EIF1AD,FAM89B,FAU,FIBP,FOSL1,FRMD8,GAL3ST3,KAT5,KCNK7,LTBP3,MAP3K11,MRPL49,MUS81,NAALADL1,OVOL1,PCNXL3,POLA2,RELA,RNASEH2C,SAC3D1,SART1,SCYL1,SF3B2,SIPA1,SLC22A20,SLC25A45,SNX15,SNX32,SPDYC,SSSCA1,SYVN1,TIGD3,TM7SF2,TMEM262,TSGA10IP,VPS51,ZFPL1,ZNHIT2"
TCGA.CK.5914.01A	11	65088348	65688301	191	-0.5924	SMALL-LOSS	NONFOCAL	29	"AP5B1,C11orf68,CCDC85B,CDC42EP2,CFL1,CTSW,DPF2,DRAP1,EFEMP2,EHBP1L1,FAM89B,FIBP,FOSL1,FRMD8,KAT5,KCNK7,LTBP3,MAP3K11,MUS81,OVOL1,PCNXL3,RELA,RNASEH2C,SCYL1,SIPA1,SLC25A45,SNX32,SSSCA1,TIGD3"
TCGA.AG.A020	11	65335704	66335307	175	-0.8832	SMALL-LOSS	NONFOCAL	49	"ACTN3,AP5B1,B4GAT1,BANF1,BBS1,BRMS1,C11orf68,CATSPER1,CCDC85B,CD248,CFL1,CNIH2,CST6,CTSF,CTSW,DPP3,DRAP1,EFEMP2,EHBP1L1,EIF1AD,FAM89B,FIBP,FOSL1,GAL3ST3,KAT5,KCNK7,KLC2,MAP3K11,MRPL11,MUS81,NPAS4,OVOL1,PACS1,PCNXL3,PELI3,RAB1B,RELA,RIN1,RNASEH2C,SART1,SF3B2,SIPA1,SLC29A2,SNX32,SSSCA1,TMEM151A,TSGA10IP,YIF1A,ZDHHC24"
TCGA.A6.A56B	11	65462842	65927772	104	-0.6501	SMALL-LOSS	NONFOCAL	23	"AP5B1,BANF1,C11orf68,CATSPER1,CCDC85B,CFL1,CST6,CTSW,DRAP1,EFEMP2,EIF1AD,FIBP,FOSL1,GAL3ST3,KAT5,MUS81,OVOL1,PACS1,RNASEH2C,SART1,SF3B2,SNX32,TSGA10IP"
TCGA.AA.A00N.01A	11	66026074	66191031	60	-0.7328	SMALL-LOSS	NONFOCAL	11	"B4GAT1,BRMS1,CD248,CNIH2,KLC2,NPAS4,RAB1B,RIN1,SLC29A2,TMEM151A,YIF1A"
TCGA.AG.3909.01A	11	66298318	66469007	63	-0.5771	SMALL-LOSS	NONFOCAL	11	"ACTN3,BBS1,CCDC87,CCS,CTSF,RBM14,RBM14-RBM4,RBM4,RBM4B,SPTBN2,ZDHHC24"
TCGA.AA.A02F.01A	11	66618145	118382603	2543	-0.6838	SMALL-LOSS	NONFOCAL	355	Too-Many
TCGA.AA.A010.01A	11	67066945	67286522	95	-1.2466	SMALL-LOSS	NONFOCAL	18	"AIP,ANKRD13D,CABP2,CABP4,CARNS1,CDK2AP2,CLCF1,CORO1B,GPR152,PITPNM1,POLD4,PPP1CA,PTPRCAP,RAD9A,RPS6KB2,SSH3,TBC1D10C,TMEM134"
TCGA.AG.4009.01A	11	67134914	67274784	51	-0.6249	SMALL-LOSS	NONFOCAL	14	"AIP,CABP4,CARNS1,CDK2AP2,CLCF1,CORO1B,GPR152,PITPNM1,PPP1CA,PTPRCAP,RAD9A,RPS6KB2,TBC1D10C,TMEM134"
TCGA.AA.A00Z.01A	11	67207547	130784129	77	-0.5318	SMALL-LOSS	NONFOCAL	471	Too-Many
TCGA.AG.3594	11	67579038	134944769	23481	-0.6207	SMALL-LOSS	NONFOCAL	469	Too-Many
TCGA.EI.6509	11	67641826	134944769	23477	-0.7963	SMALL-LOSS	NONFOCAL	469	Too-Many
TCGA.DM.A1D0	11	67953128	76898727	2246	-0.779	SMALL-LOSS	NONFOCAL	99	"ACER3,ANAPC15,ANO1,ARAP1,ARHGEF17,ARRB1,ATG16L2,B3GNT6,C11orf24,C11orf30,C2CD3,CAPN5,CCND1,CHRDL2,CLPB,COA4,CPT1A,CTTN,DEFB108B,DGAT2,DHCR7,DNAJB13,FADD,FAM168A,FAM86C1,FCHSD2,FGF19,FGF3,FGF4,FOLR1,FOLR2,FOLR3,GAL,GDPD5,IGHMBP2,IL18BP,INPPL1,KCNE3,KLHL35,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LIPT2,LOC100129216,LOC100506127,LRP5,LRRC32,LRTOMT,MAP6,MOGAT2,MRGPRD,MRGPRF,MRPL21,MRPL48,MTL5,MYEOV,MYO7A,NADSYN1,NEU3,NUMA1,OMP,OR2AT4,ORAOV1,P2RY2,P2RY6,P4HA3,PAAF1,PDE2A,PGM2L1,PHOX2A,PLEKHB1,POLD3,PPFIA1,PPME1,PPP6R3,PRKRIR,RAB6A,RELT,RNF121,RNF169,RPS3,SERPINH1,SHANK2,SLCO2B1,SPCS2,STARD10,SUV420H1,TPBGL,TPCN2,TSKU,UCP2,UCP3,UVRAG,WNT11,XRRA1,ZNF705E"
TCGA.AA.A01Q.01A	11	68453020	69631061	95	-0.6403	SMALL-LOSS	NONFOCAL	14	"CCND1,CPT1A,FGF19,FGF3,FGF4,GAL,IGHMBP2,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,ORAOV1,TPCN2"
TCGA.CK.5914.01A	11	68453020	71209358	214	-0.6327	SMALL-LOSS	NONFOCAL	21	"ANO1,CCND1,CPT1A,CTTN,DHCR7,FADD,FGF19,FGF3,FGF4,GAL,IGHMBP2,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,NADSYN1,ORAOV1,PPFIA1,SHANK2,TPCN2"
TCGA.A6.3808.01A	11	68840068	70347972	104	-0.9205	SMALL-LOSS	NONFOCAL	12	"ANO1,CCND1,CTTN,FADD,FGF19,FGF3,FGF4,MYEOV,ORAOV1,PPFIA1,SHANK2,TPCN2"
TCGA.AG.A020	11	70241934	127746514	19801	-0.7745	SMALL-LOSS	NONFOCAL	413	Too-Many
TCGA.AG.3909.01A	11	70318933	71548396	50	-0.805	SMALL-LOSS	NONFOCAL	11	"DEFB108B,DHCR7,FAM86C1,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,NADSYN1,SHANK2,ZNF705E"
TCGA.A6.5656	11	70574924	71826643	361	-0.8033	SMALL-LOSS	NONFOCAL	18	"ANAPC15,DEFB108B,DHCR7,FAM86C1,IL18BP,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,LAMTOR1,LOC100129216,LRTOMT,NADSYN1,NUMA1,RNF121,SHANK2,ZNF705E"
TCGA.AG.3611.01A	11	78516315	95621288	403	-0.6089	SMALL-LOSS	NONFOCAL	68	"AMOTL1,ANKRD42,ANKRD49,C11orf54,C11orf73,C11orf97,CCDC67,CCDC81,CCDC83,CCDC89,CCDC90B,CEP295,CEP57,CHORDC1,CREBZF,CTSC,CWC15,DDIAS,DLG2,EED,ENDOD1,FAM181B,FAM76B,FAT3,FOLH1B,FUT4,FZD4,GPR83,GRM5,HEPHL1,IZUMO1R,KDM4D,KDM4E,ME3,MED17,MRE11A,MTMR2,MTNR1B,NAALAD2,NOX4,PANX1,PCF11,PICALM,PIWIL4,PRCP,PRSS23,RAB30,RAB38,SESN3,SLC36A4,SMCO4,SRSF8,SYTL2,TAF1D,TENM4,TMEM126A,TMEM126B,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1,VSTM5"
TCGA.DM.A1D0	11	79305762	134944769	20247	-0.7847	SMALL-LOSS	NONFOCAL	348	Too-Many
TCGA.AA.3860	11	82436791	134944769	19029	-0.6617	SMALL-LOSS	NONFOCAL	348	Too-Many
TCGA.AA.3850	11	87306216	90469406	903	-0.89565	SMALL-LOSS	NONFOCAL	16	"CHORDC1,CTSC,FOLH1B,GRM5,NAALAD2,NOX4,RAB38,TRIM49,TRIM49C,TRIM49D1,TRIM49D2,TRIM64,TRIM64B,TRIM77,TYR,UBTFL1"
TCGA.AA.3966	11	88904970	115165312	8978	-0.5528	SMALL-LOSS	NONFOCAL	146	Too-Many
TCGA.AA.3680	11	89963354	114889843	8718	-0.7139	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.AA.3941	11	92000573	96523528	1628	-0.531	SMALL-LOSS	NONFOCAL	32	"AMOTL1,ANKRD49,C11orf54,C11orf97,CCDC67,CCDC82,CEP295,CEP57,CWC15,ENDOD1,FAM76B,FAT3,FUT4,GPR83,HEPHL1,IZUMO1R,JRKL,KDM4D,KDM4E,MAML2,MED17,MRE11A,MTMR2,MTNR1B,PANX1,PIWIL4,SESN3,SLC36A4,SMCO4,SRSF8,TAF1D,VSTM5"
TCGA.AG.3611.01A	11	96098114	103866782	155	-0.6498	SMALL-LOSS	NONFOCAL	26	"ANGPTL5,ARHGAP42,BIRC2,BIRC3,C11orf70,CCDC82,CEP126,CNTN5,DCUN1D5,DYNC2H1,JRKL,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,PDGFD,PGR,TMEM123,TMEM133,TRPC6,YAP1"
TCGA.AA.3941	11	101262424	104048401	1014	-0.6047	SMALL-LOSS	NONFOCAL	21	"ANGPTL5,BIRC2,BIRC3,C11orf70,CEP126,DCUN1D5,DDI1,DYNC2H1,MMP1,MMP10,MMP12,MMP13,MMP20,MMP27,MMP3,MMP7,MMP8,PDGFD,TMEM123,TRPC6,YAP1"
TCGA.EI.6508	11	102565731	114287215	3898	-0.7669	SMALL-LOSS	NONFOCAL	82	"AASDHPPT,ACAT1,ALG9,ALKBH8,ANKK1,ARHGAP20,ATM,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf65,C11orf71,C11orf87,C11orf88,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CLDN25,COLCA1,COLCA2,CRYAB,CUL5,CWF19L2,DCUN1D5,DDI1,DDX10,DIXDC1,DLAT,DRD2,DYNC2H1,ELMOD1,EXPH5,FDX1,FDXACB1,GRIA4,GUCY1A2,HSPB2,HTR3A,HTR3B,IL18,KBTBD3,KDELC2,LAYN,MMP1,MMP10,MMP12,MMP13,MMP27,MMP3,MMP8,MSANTD4,NCAM1,NNMT,NPAT,PDGFD,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RAB39A,RBM7,RDX,SDHD,SIK2,SLC35F2,SLN,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZC3H12C,ZW10"
TCGA.AA.3956	11	104070156	109253471	1523	-0.628	SMALL-LOSS	NONFOCAL	26	"AASDHPPT,ACAT1,ALKBH8,ATM,C11orf65,CARD16,CARD17,CARD18,CASP1,CASP12,CASP4,CASP5,CUL5,CWF19L2,DDX10,ELMOD1,EXPH5,GRIA4,GUCY1A2,KBTBD3,KDELC2,MSANTD4,NPAT,RAB39A,SLC35F2,SLN"
TCGA.AA.3850	11	104770698	107045099	683	-0.71605	SMALL-LOSS	NONFOCAL	11	"AASDHPPT,CARD16,CARD17,CARD18,CASP1,CASP4,CASP5,GRIA4,GUCY1A2,KBTBD3,MSANTD4"
TCGA.AA.3558	11	105005912	110302642	1501	-1.0122	SMALL-LOSS	NONFOCAL	24	"AASDHPPT,ACAT1,ALKBH8,ATM,C11orf65,C11orf87,CARD18,CUL5,CWF19L2,DDX10,ELMOD1,EXPH5,FDX1,GRIA4,GUCY1A2,KBTBD3,KDELC2,MSANTD4,NPAT,RAB39A,RDX,SLC35F2,SLN,ZC3H12C"
TCGA.AG.3727	11	105858832	127033986	7770	-0.7792	SMALL-LOSS	NONFOCAL	215	Too-Many
TCGA.AG.A01Y	11	106327767	109254948	868	-0.7651	SMALL-LOSS	NONFOCAL	15	"ACAT1,ALKBH8,ATM,C11orf65,CUL5,CWF19L2,DDX10,ELMOD1,EXPH5,GUCY1A2,KDELC2,NPAT,RAB39A,SLC35F2,SLN"
TCGA.AG.3611.01A	11	110124672	118851844	637	-0.6122	SMALL-LOSS	NONFOCAL	91	"ALG9,AMICA1,ANKK1,APOA1,APOA4,APOA5,APOC3,ARCN1,ARHGAP20,ATP5L,BACE1,BCL9L,BCO2,BTG4,BUD13,C11orf1,C11orf52,C11orf53,C11orf57,C11orf71,C11orf88,CADM1,CD3D,CD3E,CD3G,CEP164,CLDN25,COLCA1,COLCA2,CRYAB,CXCR5,DDX6,DIXDC1,DLAT,DRD2,DSCAML1,FDX1,FDXACB1,FOXR1,FXYD2,FXYD6,FXYD6-FXYD2,HSPB2,HTR3A,HTR3B,IFT46,IL10RA,IL18,KMT2A,LAYN,MPZL2,MPZL3,NCAM1,NNMT,NXPE1,NXPE2,NXPE4,PAFAH1B2,PCSK7,PHLDB1,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RBM7,RDX,REXO2,RNF214,SCN2B,SCN4B,SDHD,SIDT2,SIK2,SIK3,TAGLN,TEX12,TIMM8B,TMEM25,TMPRSS13,TMPRSS4,TMPRSS5,TREH,TTC12,TTC36,UBE4A,UPK2,USP28,ZBTB16,ZPR1,ZW10"
TCGA.AG.A00H.01A	11	110481973	111943722	132	-0.7259	SMALL-LOSS	NONFOCAL	19	"ALG9,ARHGAP20,BTG4,C11orf1,C11orf52,C11orf53,C11orf88,COLCA1,COLCA2,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2,LAYN,PIH1D2,POU2AF1,PPP2R1B,SIK2"
TCGA.CK.5914.01A	11	111735839	113091941	111	-0.6562	SMALL-LOSS	NONFOCAL	18	"ALG9,BCO2,C11orf1,C11orf52,C11orf57,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2,IL18,NCAM1,PIH1D2,PLET1,PTS,SDHD,TEX12,TIMM8B"
TCGA.EI.6513	11	111749348	112184059	96	-0.8751	SMALL-LOSS	NONFOCAL	16	"BCO2,C11orf1,C11orf52,C11orf57,CRYAB,DIXDC1,DLAT,FDXACB1,HSPB2,IL18,PIH1D2,PLET1,PTS,SDHD,TEX12,TIMM8B"
TCGA.NH.A6GA	11	116731204	126695832	3778	-0.742	SMALL-LOSS	NONFOCAL	141	Too-Many
TCGA.AA.A02E.01A	11	118277635	119057949	226	-0.5327	SMALL-LOSS	NONFOCAL	27	"ABCG4,ARCN1,ATP5L,BCL9L,C2CD2L,CCDC84,CXCR5,DDX6,DPAGT1,FOXR1,H2AFX,HINFP,HMBS,HYOU1,IFT46,KMT2A,NLRX1,PDZD3,PHLDB1,RPS25,SLC37A4,TMEM25,TRAPPC4,TREH,TTC36,UPK2,VPS11"
TCGA.AA.A02F.01A	11	118391974	121475784	375	-0.6864	SMALL-LOSS	NONFOCAL	45	"ABCG4,ARCN1,ARHGEF12,BCL9L,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CXCR5,DDX6,DPAGT1,FOXR1,GRIK4,H2AFX,HINFP,HMBS,HYOU1,IFT46,KMT2A,MCAM,MFRP,NLRX1,OAF,PDZD3,PHLDB1,POU2F3,PVRL1,RNF26,RPS25,SC5D,SLC37A4,SORL1,TBCEL,TECTA,THY1,TMEM136,TMEM25,TRAPPC4,TREH,TRIM29,TTC36,UPK2,USP2,VPS11"
TCGA.AG.A01W.01A	11	118736031	119691214	48	-0.7059	SMALL-LOSS	NONFOCAL	27	"ABCG4,BCL9L,C1QTNF5,C2CD2L,CBL,CCDC153,CCDC84,CXCR5,DPAGT1,FOXR1,H2AFX,HINFP,HMBS,HYOU1,MCAM,MFRP,NLRX1,PDZD3,PVRL1,RNF26,RPS25,SLC37A4,THY1,TRAPPC4,UPK2,USP2,VPS11"
TCGA.AA.A00N.01A	11	118849452	118981921	80	-1.0569	SMALL-LOSS	NONFOCAL	11	"C2CD2L,CCDC84,DPAGT1,FOXR1,H2AFX,HMBS,HYOU1,RPS25,SLC37A4,TRAPPC4,VPS11"
TCGA.CK.5914.01A	11	118849452	118981921	80	-0.8761	SMALL-LOSS	NONFOCAL	11	"C2CD2L,CCDC84,DPAGT1,FOXR1,H2AFX,HMBS,HYOU1,RPS25,SLC37A4,TRAPPC4,VPS11"
TCGA.AG.3611.01A	11	118889459	121481728	263	-0.6679	SMALL-LOSS	NONFOCAL	31	"ABCG4,ARHGEF12,C1QTNF5,C2CD2L,CBL,CCDC153,DPAGT1,GRIK4,H2AFX,HINFP,HMBS,HYOU1,MCAM,MFRP,NLRX1,OAF,PDZD3,POU2F3,PVRL1,RNF26,SC5D,SLC37A4,SORL1,TBCEL,TECTA,THY1,TMEM136,TRAPPC4,TRIM29,USP2,VPS11"
TCGA.AG.3611.01A	11	121970412	124792576	167	-0.5912	SMALL-LOSS	NONFOCAL	45	"BLID,BSX,C11orf63,CLMP,CRTAM,ESAM,GRAMD1B,HEPACAM,HEPN1,HSPA8,MSANTD2,NRGN,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,ROBO3,ROBO4,SCN3B,SIAE,SPA17,TBRG1,TMEM225,UBASH3B,VSIG2,VWA5A,ZNF202"
TCGA.AA.A02F.01A	11	122931254	134257391	602	-0.8706	SMALL-LOSS	NONFOCAL	96	"ACAD8,ACRV1,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,CCDC15,CDON,CHEK1,CLMP,DCPS,DDX25,EI24,ESAM,ETS1,FAM118B,FEZ1,FLI1,FOXRED1,GLB1L2,GLB1L3,GRAMD1B,HEPACAM,HEPN1,HSPA8,HYLS1,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,LOC403312,MSANTD2,NCAPD3,NFRKB,NRGN,NTM,OPCML,OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR6X1,OR8A1,OR8B12,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,PANX3,PATE1,PATE2,PATE3,PATE4,PKNOX2,PRDM10,PUS3,ROBO3,ROBO4,RPUSD4,SCN3B,SIAE,SLC37A2,SNX19,SPA17,SPATA19,SRPR,ST14,ST3GAL4,STT3A,TBRG1,THYN1,TIRAP,TMEM218,TMEM225,TMEM45B,TP53AIP1,VPS26B,VSIG2,VWA5A,ZBTB44,ZNF202"
TCGA.AG.3891.01A	11	123676109	124006789	22	-0.5532	SMALL-LOSS	NONFOCAL	11	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6M1,OR6T1,OR8D4,TMEM225,VWA5A"
TCGA.AA.3941	11	123747349	124377196	305	-1.0054	SMALL-LOSS	NONFOCAL	19	"OR10G4,OR10G7,OR10G8,OR10G9,OR10S1,OR4D5,OR6T1,OR8B2,OR8B3,OR8B4,OR8B8,OR8D1,OR8D2,OR8D4,OR8G1,OR8G2,OR8G5,TMEM225,VWA5A"
TCGA.AG.3611.01A	11	125514355	126136329	57	-0.664	SMALL-LOSS	NONFOCAL	13	"ACRV1,CDON,CHEK1,DDX25,FAM118B,HYLS1,PATE1,PATE2,PATE3,PATE4,PUS3,RPUSD4,SRPR"
TCGA.AG.3611.01A	11	126160737	134257391	261	-0.7241	SMALL-LOSS	NONFOCAL	34	"ACAD8,ADAMTS15,ADAMTS8,APLP2,ARHGAP32,B3GAT1,BARX2,C11orf44,C11orf45,DCPS,ETS1,FLI1,GLB1L2,GLB1L3,IGSF9B,JAM3,KCNJ1,KCNJ5,KIRREL3,NCAPD3,NFRKB,NTM,OPCML,PRDM10,SNX19,SPATA19,ST14,ST3GAL4,THYN1,TIRAP,TMEM45B,TP53AIP1,VPS26B,ZBTB44"
TCGA.DT.5265	11	131568101	134944769	1502	-0.5204	SMALL-LOSS	NONFOCAL	12	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,NTM,OPCML,SPATA19,THYN1,VPS26B"
TCGA.AG.A020	11	132068392	134944769	1243	-0.8957	SMALL-LOSS	NONFOCAL	12	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,NTM,OPCML,SPATA19,THYN1,VPS26B"
TCGA.AA.3664	11	132296203	134944769	1149	-0.9224	SMALL-LOSS	NONFOCAL	11	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,OPCML,SPATA19,THYN1,VPS26B"
TCGA.AF.6655	11	133306064	134944769	695	-0.6699	SMALL-LOSS	NONFOCAL	11	"ACAD8,B3GAT1,GLB1L2,GLB1L3,IGSF9B,JAM3,NCAPD3,OPCML,SPATA19,THYN1,VPS26B"
TCGA.AA.3688	12	192219	2235627	641	-0.7371	SMALL-LOSS	NONFOCAL	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.DM.A1D7	12	192219	2281924	651	-0.6287	SMALL-LOSS	NONFOCAL	17	"ADIPOR2,B4GALNT3,CACNA1C,CACNA2D4,CCDC77,DCP1B,ERC1,FBXL14,IQSEC3,KDM5A,LRTM2,NINJ2,RAD52,SLC6A12,SLC6A13,WNK1,WNT5B"
TCGA.AG.4021	12	192219	21126229	7148	-0.7621	SMALL-LOSS	NONFOCAL	215	Too-Many
TCGA.NH.A8F7	12	192219	25975646	8870	-0.5551	SMALL-LOSS	NONFOCAL	239	Too-Many
TCGA.AG.3602	12	192219	30495355	10669	-0.6883	SMALL-LOSS	NONFOCAL	262	Too-Many
TCGA.AA.3688	12	2260753	13811371	4238	-0.7685	SMALL-LOSS	NONFOCAL	169	Too-Many
TCGA.AG.4015	12	2881762	3932065	429	-0.7732	SMALL-LOSS	NONFOCAL	11	"CRACR2A,FKBP4,FOXM1,ITFG2,NRIP2,PARP11,PRMT8,RHNO1,TEAD4,TSPAN9,TULP3"
TCGA.A6.6652	12	4552230	25215190	6991	-0.7885	SMALL-LOSS	NONFOCAL	204	Too-Many
TCGA.AA.3952	12	4699231	13280481	2887	-0.6047	SMALL-LOSS	NONFOCAL	149	Too-Many
TCGA.DY.A1DG	12	5538111	9821780	1195	-0.5355	SMALL-LOSS	NONFOCAL	78	"A2M,A2ML1,ACRBP,ACSM4,AICDA,ANO2,APOBEC1,ATN1,C12orf57,C1R,C1RL,C1S,C3AR1,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,CLSTN3,COPS7A,DPPA3,EMG1,ENO2,FAM90A1,FOXJ2,GAPDH,GDF3,GNB3,GPR162,IFFO1,ING4,KLRB1,KLRG1,LAG3,LPAR5,LPCAT3,LRRC23,LTBR,M6PR,MFAP5,MLF2,MRPL51,NANOG,NANOGNB,NCAPD2,NECAP1,NOP2,NTF3,P3H3,PEX5,PHB2,PHC1,PIANP,PLEKHG6,PTMS,PTPN6,PZP,RBP5,RIMKLB,SCNN1A,SLC2A14,SLC2A3,SPSB2,TAPBPL,TNFRSF1A,TPI1,USP5,VAMP1,VWF,ZNF384,ZNF705A"
TCGA.AA.3524	12	5749046	6652226	357	-0.7838	SMALL-LOSS	NONFOCAL	14	"ANO2,CD27,CD9,GAPDH,IFFO1,LTBR,MRPL51,NCAPD2,PLEKHG6,SCNN1A,TAPBPL,TNFRSF1A,VAMP1,VWF"
TCGA.AG.4015	12	6396155	6754517	78	-0.6276	SMALL-LOSS	NONFOCAL	15	"ACRBP,CD27,CHD4,GAPDH,IFFO1,LPAR5,LTBR,MRPL51,NCAPD2,NOP2,PLEKHG6,SCNN1A,TAPBPL,TNFRSF1A,VAMP1"
TCGA.AA.A00N.01A	12	6573558	6886915	131	-0.9685	SMALL-LOSS	NONFOCAL	16	"ACRBP,CHD4,COPS7A,GAPDH,IFFO1,ING4,LAG3,LPAR5,MLF2,MRPL51,NCAPD2,NOP2,PIANP,PTMS,VAMP1,ZNF384"
TCGA.CK.5914.01A	12	6638931	7086286	211	-0.5898	SMALL-LOSS	NONFOCAL	30	"ACRBP,ATN1,C12orf57,CD4,CDCA3,CHD4,COPS7A,EMG1,ENO2,GAPDH,GNB3,GPR162,IFFO1,ING4,LAG3,LPAR5,LPCAT3,LRRC23,MLF2,NCAPD2,NOP2,P3H3,PHB2,PIANP,PTMS,PTPN6,SPSB2,TPI1,USP5,ZNF384"
TCGA.AG.4015	12	6757400	6980180	54	-1.0169	SMALL-LOSS	NONFOCAL	15	"CD4,CDCA3,COPS7A,GNB3,GPR162,ING4,LAG3,MLF2,P3H3,PIANP,PTMS,SPSB2,TPI1,USP5,ZNF384"
TCGA.CA.6715	12	6894163	17757556	3397	-0.8352	SMALL-LOSS	NONFOCAL	139	Too-Many
TCGA.AG.3909.01A	12	6935324	7092541	98	-0.5285	SMALL-LOSS	NONFOCAL	15	"ATN1,C12orf57,CDCA3,EMG1,ENO2,GNB3,GPR162,LPCAT3,LRRC23,P3H3,PHB2,PTPN6,SPSB2,TPI1,USP5"
TCGA.AF.2693	12	6942671	7360228	77	-0.6562	SMALL-LOSS	NONFOCAL	20	"ATN1,C12orf57,C1R,C1RL,C1S,CDCA3,CLSTN3,EMG1,ENO2,GNB3,LPCAT3,LRRC23,P3H3,PEX5,PHB2,PTPN6,RBP5,SPSB2,TPI1,USP5"
TCGA.CM.6172	12	7719030	39625909	9525	-0.6622	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.AA.A02E.01A	12	7802106	8998632	120	-0.6303	SMALL-LOSS	NONFOCAL	21	"A2ML1,AICDA,APOBEC1,C3AR1,CLEC4A,CLEC4C,CLEC4D,CLEC4E,CLEC6A,DPPA3,FAM90A1,FOXJ2,GDF3,MFAP5,NANOG,NANOGNB,NECAP1,RIMKLB,SLC2A14,SLC2A3,ZNF705A"
TCGA.AF.3913	12	8022892	34760330	9124	-0.5996	SMALL-LOSS	NONFOCAL	181	Too-Many
TCGA.AF.2693	12	8287849	13330246	1579	-0.5485	SMALL-LOSS	NONFOCAL	80	"A2M,A2ML1,AICDA,APOLD1,BCL2L14,CD69,CDKN1B,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC4A,CLEC4D,CLEC4E,CLEC6A,CLEC7A,CLEC9A,CLECL1,CREBL2,DDX47,DUSP16,ETV6,FAM90A1,GABARAPL1,GPR19,GPRC5A,GPRC5D,GSG1,HEBP1,KIAA1467,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRG1,KLRK1,LOH12CR1,LRP6,M6PR,MAGOHB,MANSC1,MFAP5,OLR1,PHC1,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PZP,RIMKLB,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3,ZNF705A"
TCGA.EI.6508	12	8978659	37880477	8972	-0.7001	SMALL-LOSS	NONFOCAL	167	Too-Many
TCGA.DM.A1D7	12	9380858	11504090	656	-0.6008	SMALL-LOSS	NONFOCAL	47	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,GABARAPL1,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,MAGOHB,OLR1,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,YBX3"
TCGA.AA.3660	12	9543483	10356972	281	-0.7596	SMALL-LOSS	NONFOCAL	16	"CD69,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,KLRB1,KLRF1,KLRF2,OLR1,TMEM52B"
TCGA.QL.A97D	12	9746096	21372343	3925	-0.5269	SMALL-LOSS	NONFOCAL	99	"AEBP2,APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CAPZA3,CD69,CDKN1B,CLEC12A,CLEC12B,CLEC1A,CLEC1B,CLEC2A,CLEC2B,CLEC2D,CLEC7A,CLEC9A,CLECL1,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETV6,GABARAPL1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,KLRB1,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRD1,KLRF1,KLRF2,KLRK1,LMO3,LOH12CR1,LRP6,MAGOHB,MANSC1,MGP,MGST1,OLR1,PDE3A,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,PTPRO,RERG,RERGL,SLC15A5,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO3,SMIM10L1,STRAP,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,TMEM52B,WBP11,YBX3"
TCGA.AG.4015	12	10479491	12293071	612	-0.7105	SMALL-LOSS	NONFOCAL	34	"BCL2L14,ETV6,KLRC1,KLRC2,KLRC3,KLRC4,KLRC4-KLRK1,KLRK1,LRP6,MAGOHB,PRB1,PRB2,PRB3,PRB4,PRH1,PRH2,PRR4,SMIM10L1,STYK1,TAS2R10,TAS2R13,TAS2R14,TAS2R19,TAS2R20,TAS2R30,TAS2R31,TAS2R42,TAS2R43,TAS2R46,TAS2R50,TAS2R7,TAS2R8,TAS2R9,YBX3"
TCGA.G4.6586	12	11381423	15604804	1611	-0.5941	SMALL-LOSS	NONFOCAL	37	"APOLD1,ARHGDIB,ART4,ATF7IP,BCL2L14,C12orf60,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,ERP27,ETV6,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,LOH12CR1,LRP6,MANSC1,MGP,PDE6H,PLBD1,PRB1,PRB2,PRB3,PRB4,PTPRO,RERG,SMCO3,WBP11"
TCGA.DM.A1D7	12	11553367	13330246	668	-0.5692	SMALL-LOSS	NONFOCAL	16	"APOLD1,BCL2L14,CDKN1B,CREBL2,DDX47,DUSP16,ETV6,GPR19,GPRC5A,GPRC5D,GSG1,HEBP1,KIAA1467,LOH12CR1,LRP6,MANSC1"
TCGA.AG.A026	12	12284589	14252241	849	-0.5438	SMALL-LOSS	NONFOCAL	16	"APOLD1,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,HEBP1,KIAA1467,LOH12CR1,LRP6,MANSC1"
TCGA.AG.4015	12	12302883	27473592	5214	-1.1894	SMALL-LOSS	NONFOCAL	80	"ABCC9,AEBP2,APOLD1,ARHGDIB,ART4,ASUN,ATF7IP,BCAT1,BHLHE41,C12orf60,C12orf71,C12orf77,C2CD5,CAPZA3,CASC1,CDKN1B,CMAS,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,ETNK1,FGFR1OP2,GOLT1B,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,GYS2,H2AFJ,HEBP1,HIST4H4,IAPP,ITPR2,KCNJ8,KIAA1467,KRAS,LDHB,LMNTD1,LMO3,LOH12CR1,LRMP,LRP6,LYRM5,MANSC1,MED21,MGP,MGST1,PDE3A,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PTPRO,PYROXD1,RASSF8,RECQL,RERG,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO3,SOX5,SPX,SSPN,ST8SIA1,STK38L,STRAP,TM7SF3,WBP11"
TCGA.AG.3574	12	12541868	13873690	655	-0.9081	SMALL-LOSS	NONFOCAL	14	"APOLD1,CDKN1B,CREBL2,DDX47,DUSP16,EMP1,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,HEBP1,KIAA1467,LOH12CR1"
TCGA.AA.3660	12	12658340	16602468	1439	-0.6736	SMALL-LOSS	NONFOCAL	33	"APOLD1,ARHGDIB,ART4,ATF7IP,C12orf60,CDKN1B,CREBL2,DDX47,DERA,DUSP16,EMP1,EPS8,ERP27,GPR19,GPRC5A,GPRC5D,GRIN2B,GSG1,GUCY2C,H2AFJ,HEBP1,HIST4H4,KIAA1467,MGP,MGST1,PDE6H,PLBD1,PTPRO,RERG,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.AA.3952	12	13317707	18729613	1784	-0.5849	SMALL-LOSS	NONFOCAL	25	"ARHGDIB,ART4,ATF7IP,C12orf60,DERA,EMP1,EPS8,ERP27,GRIN2B,GUCY2C,H2AFJ,HIST4H4,LMO3,MGP,MGST1,PDE6H,PIK3C2G,PLBD1,PTPRO,RERG,RERGL,SLC15A5,SMCO3,STRAP,WBP11"
TCGA.DM.A1D7	12	13336366	15573642	895	-0.5431	SMALL-LOSS	NONFOCAL	17	"ARHGDIB,ART4,ATF7IP,C12orf60,EMP1,ERP27,GRIN2B,GUCY2C,H2AFJ,HIST4H4,MGP,PDE6H,PLBD1,PTPRO,RERG,SMCO3,WBP11"
TCGA.AF.2693	12	13336366	23162289	3251	-0.5306	SMALL-LOSS	NONFOCAL	48	"ABCC9,AEBP2,ARHGDIB,ART4,ATF7IP,C12orf60,C2CD5,CAPZA3,CMAS,DERA,EMP1,EPS8,ERP27,ETNK1,GOLT1B,GRIN2B,GUCY2C,GYS2,H2AFJ,HIST4H4,IAPP,KCNJ8,LDHB,LMO3,MGP,MGST1,PDE3A,PDE6H,PIK3C2G,PLBD1,PLCZ1,PLEKHA5,PTPRO,PYROXD1,RECQL,RERG,RERGL,SLC15A5,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO3,SPX,ST8SIA1,STRAP,WBP11"
TCGA.AA.3952	12	20282932	24672025	1444	-0.6368	SMALL-LOSS	NONFOCAL	20	"ABCC9,C2CD5,CMAS,ETNK1,GOLT1B,GYS2,IAPP,KCNJ8,LDHB,PDE3A,PYROXD1,RECQL,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SOX5,SPX,ST8SIA1"
TCGA.AF.2693	12	25593415	29203677	1369	-0.5509	SMALL-LOSS	NONFOCAL	20	"ARNTL2,ASUN,BHLHE41,C12orf71,CCDC91,FGFR1OP2,ITPR2,KLHL42,LMNTD1,MANSC4,MED21,MRPS35,PPFIBP1,PTHLH,RASSF8,REP15,SMCO2,SSPN,STK38L,TM7SF3"
TCGA.DC.4745	12	26272823	31595063	2126	-0.834	SMALL-LOSS	NONFOCAL	28	"ARNTL2,ASUN,BHLHE41,C12orf71,CAPRIN2,CCDC91,DDX11,DENND5B,ERGIC2,FAM60A,FAR2,FGFR1OP2,IPO8,ITPR2,KLHL42,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,SMCO2,SSPN,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.AA.3952	12	26957400	31346517	1745	-0.5886	SMALL-LOSS	NONFOCAL	24	"ARNTL2,ASUN,C12orf71,CAPRIN2,CCDC91,DDX11,ERGIC2,FAR2,FGFR1OP2,IPO8,ITPR2,KLHL42,MANSC4,MED21,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,TM7SF3,TMTC1,TSPAN11"
TCGA.AG.4015	12	27475720	31038081	1497	-0.747	SMALL-LOSS	NONFOCAL	16	"ARNTL2,CAPRIN2,CCDC91,ERGIC2,FAR2,IPO8,KLHL42,MANSC4,MRPS35,OVCH1,PPFIBP1,PTHLH,REP15,SMCO2,STK38L,TMTC1"
TCGA.AG.4021	12	28860928	37913468	2125	-0.737	SMALL-LOSS	NONFOCAL	21	"ALG10,AMN1,BICD1,CAPRIN2,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,H3F3C,IPO8,KIAA1551,METTL20,OVCH1,PKP2,SYT10,TMTC1,TSPAN11,YARS2"
TCGA.AA.3660	12	29002129	33185987	1747	-0.6706	SMALL-LOSS	NONFOCAL	19	"AMN1,BICD1,CAPRIN2,DDX11,DENND5B,DNM1L,ERGIC2,FAM60A,FAR2,FGD4,H3F3C,IPO8,KIAA1551,METTL20,OVCH1,PKP2,TMTC1,TSPAN11,YARS2"
TCGA.AG.3602	12	30599081	93669838	16969	-0.687	SMALL-LOSS	NONFOCAL	436	Too-Many
TCGA.AZ.4684.01A	12	30903940	34175487	141	-0.5563	SMALL-LOSS	NONFOCAL	16	"ALG10,AMN1,BICD1,CAPRIN2,DDX11,DENND5B,DNM1L,FAM60A,FGD4,H3F3C,KIAA1551,METTL20,PKP2,SYT10,TSPAN11,YARS2"
TCGA.AA.3982	12	33697472	41990207	1193	-0.5239	SMALL-LOSS	NONFOCAL	11	"ABCD2,ALG10,ALG10B,C12orf40,CNTN1,CPNE8,KIF21A,LRRK2,MUC19,PDZRN4,SLC2A13"
TCGA.AG.A014.01A	12	38710668	46582746	352	-0.7637	SMALL-LOSS	NONFOCAL	26	"ABCD2,ADAMTS20,ALG10B,ANO6,ARID2,C12orf40,CNTN1,CPNE8,DBX2,GXYLT1,IRAK4,KIF21A,LRRK2,MUC19,NELL2,PDZRN4,PPHLN1,PRICKLE1,PUS7L,SCAF11,SLC2A13,SLC38A1,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.BM.6198	12	40251309	45507541	1754	-0.56205	SMALL-LOSS	NONFOCAL	17	"ADAMTS20,CNTN1,DBX2,GXYLT1,IRAK4,LRRK2,MUC19,NELL2,PDZRN4,PPHLN1,PRICKLE1,PUS7L,SLC2A13,TMEM117,TWF1,YAF2,ZCRB1"
TCGA.AA.A00N.01A	12	49217427	49418312	68	-0.9862	SMALL-LOSS	NONFOCAL	11	"ARF3,CACNB3,CCDC65,DDN,DDX23,FKBP11,KMT2D,PRKAG1,RND1,WNT1,WNT10B"
TCGA.AA.A01K.01A	12	49227023	49724990	128	-0.7621	SMALL-LOSS	NONFOCAL	18	"ARF3,CCDC65,DDN,DDX23,DHH,FKBP11,KMT2D,LMBR1L,PRKAG1,PRPH,RHEBL1,RND1,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B"
TCGA.AG.3909.01A	12	49298089	49745083	129	-0.7366	SMALL-LOSS	NONFOCAL	18	"ARF3,C1QL4,CCDC65,DDN,DHH,DNAJC22,FKBP11,KMT2D,LMBR1L,PRKAG1,PRPH,RHEBL1,TROAP,TUBA1A,TUBA1B,TUBA1C,WNT1,WNT10B"
TCGA.CK.5914.01A	12	49463446	49888517	57	-0.5652	SMALL-LOSS	NONFOCAL	11	"C1QL4,DHH,DNAJC22,LMBR1L,PRPH,RHEBL1,SPATS2,TROAP,TUBA1A,TUBA1B,TUBA1C"
TCGA.AA.A01Q.01A	12	52159444	52680489	62	-0.6322	SMALL-LOSS	NONFOCAL	12	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,FIGNL2,GRASP,KRT7,KRT80,KRT81,NR4A1,SCN8A"
TCGA.AA.A00N.01A	12	52180295	52797445	109	-0.5594	SMALL-LOSS	NONFOCAL	17	"ACVR1B,ACVRL1,ANKRD33,ATG101,C12orf80,FIGNL2,GRASP,KRT7,KRT80,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,NR4A1,SCN8A"
TCGA.CK.5914.01A	12	54332729	54677968	35	-0.9195	SMALL-LOSS	NONFOCAL	12	"CBX5,HNRNPA1,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,SMUG1"
TCGA.AA.3850	12	55272661	56015918	223	-0.54485	SMALL-LOSS	NONFOCAL	16	"NEUROD4,OR10A7,OR2AP1,OR6C1,OR6C2,OR6C3,OR6C4,OR6C6,OR6C65,OR6C68,OR6C70,OR6C74,OR6C75,OR6C76,OR9K2,TESPA1"
TCGA.AA.A02E.01A	12	57584557	58206963	254	-0.5252	SMALL-LOSS	NONFOCAL	30	"AGAP2,ARHGAP9,ARHGEF25,AVIL,B4GALNT1,CDK4,CYP27B1,DCTN2,DDIT3,DTX3,GLI1,INHBC,INHBE,KIF5A,LRP1,MARCH9,MARS,MBD6,METTL1,METTL21B,NDUFA4L2,NXPH4,OS9,PIP4K2C,R3HDM2,SHMT2,SLC26A10,STAC3,TSFM,TSPAN31"
TCGA.AG.A014.01A	12	58158112	64697398	188	-0.6378	SMALL-LOSS	NONFOCAL	19	"AVIL,AVPR1A,C12orf56,C12orf66,CTDSP2,CYP27B1,DPY19L2,FAM19A2,LRIG3,METTL1,METTL21B,MON2,PPM1H,SLC16A7,SRGAP1,TMEM5,TSFM,USP15,XRCC6BP1"
TCGA.AG.4008	12	64922186	67275646	731	-0.5336	SMALL-LOSS	NONFOCAL	13	"GNS,GRIP1,HELB,HMGA2,IRAK3,LEMD3,LLPH,LOC100129940,MSRB3,RASSF3,TBC1D30,TMBIM4,WIF1"
TCGA.AG.A014.01A	12	65141465	70048645	220	-0.582	SMALL-LOSS	NONFOCAL	30	"BEST3,CAND1,CCT2,CPM,CPSF6,DYRK2,FRS2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LEMD3,LLPH,LOC100129940,LRRC10,LYZ,MDM1,MDM2,MSRB3,NUP107,RAP1B,SLC35E3,TBC1D30,TMBIM4,WIF1,YEATS4"
TCGA.AA.3544	12	65664974	68837122	1284	-0.78	SMALL-LOSS	NONFOCAL	14	"CAND1,DYRK2,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,LLPH,LOC100129940,MDM1,MSRB3,TMBIM4"
TCGA.A6.5662	12	66770378	133777644	21874	-0.9746	SMALL-LOSS	NONFOCAL	394	Too-Many
TCGA.AG.A014.01A	12	70149156	95418907	804	-0.7	SMALL-LOSS	NONFOCAL	82	"ACSS3,ALX1,ATP2B1,ATXN7L3B,BBS10,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CAPS2,CCDC59,CCER1,CEP290,CEP83,CLLU1,CLLU1OS,CNOT2,CRADD,CSRP2,DCN,DUSP6,E2F7,EEA1,EPYC,GALNT4,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KCNMB4,KERA,KITLG,KRR1,LGR5,LIN7A,LRRIQ1,LUM,METTL25,MGAT4C,MRPL42,MYF5,MYF6,MYRFL,NAP1L1,NAV3,NDUFA12,NR2C1,NTS,NUDT4,OSBPL8,OTOGL,PAWR,PHLDA1,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRB,PTPRQ,PTPRR,RAB21,RAB3IP,RASSF9,SLC6A15,SOCS2,SYT1,TBC1D15,THAP2,TMCC3,TMEM19,TMTC2,TMTC3,TPH2,TRHDE,TSPAN19,TSPAN8,UBE2N,ZDHHC17,ZFC3H1"
TCGA.CM.6675	12	71246495	116523879	14050	-1.0385	SMALL-LOSS	NONFOCAL	229	Too-Many
TCGA.CA.6715	12	72197573	79098756	2060	-0.826	SMALL-LOSS	NONFOCAL	18	"ATXN7L3B,BBS10,CAPS2,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,NAP1L1,NAV3,OSBPL8,PHLDA1,TBC1D15,TPH2,TRHDE,ZDHHC17"
TCGA.AG.3732	12	72904287	105161853	9682	-0.5378	SMALL-LOSS	NONFOCAL	124	Too-Many
TCGA.AA.3860	12	74444513	83187604	2587	-0.6521	SMALL-LOSS	NONFOCAL	28	"ACSS3,ATXN7L3B,BBS10,CAPS2,CCDC59,CSRP2,E2F7,GLIPR1,GLIPR1L1,GLIPR1L2,KCNC2,KRR1,LIN7A,METTL25,MYF5,MYF6,NAP1L1,NAV3,OSBPL8,OTOGL,PAWR,PHLDA1,PPFIA2,PPP1R12A,PTPRQ,SYT1,TMTC2,ZDHHC17"
TCGA.AZ.6607	12	75191229	97531464	6554	-0.606	SMALL-LOSS	NONFOCAL	80	"ACSS3,ALX1,AMDHD1,ATP2B1,BBS10,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CAPS2,CCDC38,CCDC59,CCER1,CDK17,CEP290,CEP83,CFAP54,CLLU1,CLLU1OS,CRADD,CSRP2,DCN,DUSP6,E2F7,EEA1,ELK3,EPYC,FGD6,GALNT4,GLIPR1,GLIPR1L1,GLIPR1L2,HAL,KCNC2,KERA,KITLG,KRR1,LIN7A,LRRIQ1,LTA4H,LUM,METAP2,METTL25,MGAT4C,MRPL42,MYF5,MYF6,NAP1L1,NAV3,NDUFA12,NEDD1,NR2C1,NTN4,NTS,NUDT4,OSBPL8,OTOGL,PAWR,PHLDA1,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SNRPF,SOCS2,SYT1,TMCC3,TMTC2,TMTC3,TSPAN19,UBE2N,USP44,VEZT,ZDHHC17"
TCGA.AG.A032.01A	12	76424299	105622853	1392	-0.5203	SMALL-LOSS	NONFOCAL	121	Too-Many
TCGA.AA.3850	12	77511308	92390009	3970	-0.77285	SMALL-LOSS	NONFOCAL	37	"ACSS3,ALX1,ATP2B1,C12orf29,C12orf50,C12orf79,CCDC59,CCER1,CEP290,DCN,DUSP6,EPYC,GALNT4,KERA,KITLG,LIN7A,LRRIQ1,LUM,METTL25,MGAT4C,MYF5,MYF6,NAV3,NTS,OTOGL,PAWR,POC1B,POC1B-GALNT4,PPFIA2,PPP1R12A,PTPRQ,RASSF9,SLC6A15,SYT1,TMTC2,TMTC3,TSPAN19"
TCGA.CA.6715	12	80039944	85809906	1528	-0.8299	SMALL-LOSS	NONFOCAL	16	"ACSS3,ALX1,CCDC59,LIN7A,LRRIQ1,METTL25,MYF5,MYF6,OTOGL,PAWR,PPFIA2,PPP1R12A,PTPRQ,SLC6A15,TMTC2,TSPAN19"
TCGA.AA.3544	12	80974589	95113412	3913	-0.7374	SMALL-LOSS	NONFOCAL	46	"ACSS3,ALX1,ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC59,CCER1,CEP290,CEP83,CLLU1,CLLU1OS,CRADD,DCN,DUSP6,EEA1,EPYC,GALNT4,KERA,KITLG,LIN7A,LRRIQ1,LUM,METTL25,MGAT4C,MRPL42,MYF5,MYF6,NTS,NUDT4,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,PPFIA2,PTPRQ,RASSF9,SLC6A15,SOCS2,TMCC3,TMTC2,TMTC3,TSPAN19,UBE2N"
TCGA.AA.3982	12	83875439	92462800	2115	-0.5528	SMALL-LOSS	NONFOCAL	23	"ALX1,ATP2B1,C12orf29,C12orf50,C12orf79,CCER1,CEP290,DCN,DUSP6,EPYC,GALNT4,KERA,KITLG,LRRIQ1,LUM,MGAT4C,NTS,POC1B,POC1B-GALNT4,RASSF9,SLC6A15,TMTC3,TSPAN19"
TCGA.EI.6883	12	87212542	98770208	3730	-0.6464	SMALL-LOSS	NONFOCAL	47	"AMDHD1,ATP2B1,BTG1,C12orf29,C12orf50,C12orf74,C12orf79,CCDC38,CCER1,CDK17,CEP290,CEP83,CFAP54,CLLU1,CLLU1OS,CRADD,DCN,DUSP6,EEA1,ELK3,EPYC,FGD6,GALNT4,HAL,KERA,KITLG,LTA4H,LUM,METAP2,MGAT4C,MRPL42,NDUFA12,NEDD1,NR2C1,NTN4,NUDT4,PLEKHG7,PLXNC1,POC1B,POC1B-GALNT4,SNRPF,SOCS2,TMCC3,TMTC3,UBE2N,USP44,VEZT"
TCGA.AG.3574	12	88494093	93852324	1546	-0.9719	SMALL-LOSS	NONFOCAL	22	"ATP2B1,BTG1,C12orf74,C12orf79,CCER1,CEP290,CLLU1,CLLU1OS,DCN,DUSP6,EEA1,EPYC,GALNT4,KERA,KITLG,LUM,NUDT4,PLEKHG7,POC1B,POC1B-GALNT4,TMTC3,UBE2N"
TCGA.CA.6715	12	93828204	99671811	2161	-0.8382	SMALL-LOSS	NONFOCAL	28	"AMDHD1,ANKS1B,APAF1,CCDC38,CDK17,CEP83,CFAP54,CRADD,ELK3,FGD6,HAL,IKBIP,LTA4H,METAP2,MRPL42,NDUFA12,NEDD1,NR2C1,NTN4,PLXNC1,SLC25A3,SNRPF,SOCS2,TMCC3,TMPO,UBE2N,USP44,VEZT"
TCGA.AA.3549	12	110276051	113936371	619	-0.6466	SMALL-LOSS	NONFOCAL	50	"ACAD10,ALDH2,ANAPC7,ANKRD13A,ARPC3,ATP2A2,ATXN2,BRAP,C12orf76,CCDC42B,CCDC63,CUX2,DDX54,DTX1,ERP29,FAM109A,FAM216A,GIT2,GLTP,GPN3,HECTD4,HVCN1,IFT81,IQCD,LHX5,MAPKAPK5,MYL2,NAA25,OAS1,OAS2,OAS3,PLBD2,PPP1CC,PPTC7,PTPN11,RAD9B,RASAL1,RITA1,RPH3A,RPL6,SDS,SDSL,SH2B3,SLC8B1,TCHP,TCTN1,TMEM116,TPCN1,TRAFD1,VPS29"
TCGA.F4.6461	12	111319723	112487247	190	-0.5384	SMALL-LOSS	NONFOCAL	13	"ACAD10,ALDH2,ATXN2,BRAP,CCDC63,CUX2,ERP29,FAM109A,MAPKAPK5,MYL2,NAA25,SH2B3,TMEM116"
TCGA.AA.3660	12	111539709	114334544	653	-0.7545	SMALL-LOSS	NONFOCAL	32	"ACAD10,ALDH2,ATXN2,BRAP,CCDC42B,CUX2,DDX54,DTX1,ERP29,FAM109A,HECTD4,IQCD,LHX5,MAPKAPK5,NAA25,OAS1,OAS2,OAS3,PLBD2,PTPN11,RASAL1,RBM19,RITA1,RPH3A,RPL6,SDS,SDSL,SH2B3,SLC8B1,TMEM116,TPCN1,TRAFD1"
TCGA.EI.6883	12	114401172	120543405	2527	-0.6667	SMALL-LOSS	NONFOCAL	27	"C12orf49,CCDC60,CCDC64,CIT,FBXO21,FBXW8,HRK,HSPB8,KSR2,MAP1LC3B2,MED13L,NOS1,PEBP1,PRKAB1,RAB35,RBM19,RFC5,RNFT2,SRRM4,SUDS3,TAOK3,TBX3,TBX5,TESC,TMEM233,VSIG10,WSB2"
TCGA.AA.A02E.01A	12	120527704	133778682	1014	-0.5433	SMALL-LOSS	NONFOCAL	120	Too-Many
TCGA.AA.A00N.01A	12	120611407	121125059	87	-0.5759	SMALL-LOSS	NONFOCAL	16	"CABP1,COQ5,COX6A1,DYNLL1,GATC,GCN1L1,MLEC,MSI1,PLA2G1B,POP5,PXN,RNF10,RPLP0,SIRT4,SRSF9,TRIAP1"
TCGA.A6.3808.01A	12	123047133	123950463	190	-0.6869	SMALL-LOSS	NONFOCAL	19	"ABCB9,ARL6IP4,C12orf65,CCDC62,CDK2AP1,DENR,HCAR1,HCAR2,HCAR3,HIP1R,KNTC1,MPHOSPH9,OGFOD2,PITPNM2,RILPL2,SBNO1,SETD8,SNRNP35,VPS37B"
TCGA.DY.A1DF	12	123719443	133777644	4071	-0.5771	SMALL-LOSS	NONFOCAL	59	"AACS,ADGRD1,ANKLE2,ATP6V0A2,BRI3BP,C12orf65,CCDC92,CDK2AP1,CHFR,DDX51,DDX55,DHX37,DNAH10,EIF2B1,EP400,FAM101A,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,GTF2H3,LRCOL1,MMP17,NCOR2,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RILPL1,RILPL2,RIMBP2,SBNO1,SCARB1,SETD8,SFSWAP,SLC15A4,SNRNP35,STX2,TCTN2,TMED2,TMEM132B,TMEM132C,TMEM132D,UBC,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF664,ZNF664-FAM101A,ZNF84,ZNF891"
TCGA.AA.3544	12	124345152	126599932	931	-0.7834	SMALL-LOSS	NONFOCAL	12	"AACS,BRI3BP,CCDC92,DHX37,DNAH10,FAM101A,NCOR2,SCARB1,TMEM132B,UBC,ZNF664,ZNF664-FAM101A"
TCGA.EI.6883	12	127307650	133777644	2690	-0.7245	SMALL-LOSS	NONFOCAL	34	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GLT1D1,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132C,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.A6.5665	12	130201945	133777644	1135	-0.7986	SMALL-LOSS	NONFOCAL	31	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,FZD10,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,PIWIL1,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,TMEM132D,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.DC.6155	12	130926062	133777644	737	-0.5768	SMALL-LOSS	NONFOCAL	28	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,RAN,RIMBP2,SFSWAP,STX2,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.A6.2672	12	131239906	133777644	576	-0.7338	SMALL-LOSS	NONFOCAL	27	"ADGRD1,ANKLE2,CHFR,DDX51,EP400,FBRSL1,GALNT9,GOLGA3,LRCOL1,MMP17,NOC4L,P2RX2,PGAM5,POLE,PUS1,PXMP2,RAN,SFSWAP,STX2,ULK1,ZNF10,ZNF140,ZNF26,ZNF268,ZNF605,ZNF84,ZNF891"
TCGA.AA.A00N.01A	12	131356530	133208892	182	-0.5651	SMALL-LOSS	NONFOCAL	14	"ADGRD1,DDX51,EP400,FBRSL1,GALNT9,LRCOL1,MMP17,NOC4L,P2RX2,POLE,PUS1,RAN,SFSWAP,ULK1"
TCGA.CK.5914.01A	12	131438952	133251934	199	-0.5822	SMALL-LOSS	NONFOCAL	13	"ADGRD1,DDX51,EP400,FBRSL1,GALNT9,LRCOL1,MMP17,NOC4L,P2RX2,POLE,PUS1,SFSWAP,ULK1"
TCGA.AG.3594	13	19212261	26881948	2954	-0.6042	SMALL-LOSS	NONFOCAL	41	"AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,C1QTNF9B-AS1,CDK8,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRPL57,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RNF6,SACS,SAP18,SGCG,SHISA2,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5"
TCGA.AG.3575	13	19212261	42651001	9170	-0.7383	SMALL-LOSS	NONFOCAL	116	Too-Many
TCGA.DY.A0XA	13	21363185	24280831	1220	-0.6021	SMALL-LOSS	NONFOCAL	11	"FGF9,LATS2,MICU2,MRPL57,SACS,SAP18,SGCG,SKA3,TNFRSF19,XPO4,ZDHHC20"
TCGA.CM.6675	13	29436436	48935422	7484	-1.0574	SMALL-LOSS	NONFOCAL	91	"AKAP11,ALG5,ALOX5AP,B3GALTL,BRCA2,CCDC122,CCDC169,CCDC169-SOHLH2,CCNA1,COG3,COG6,CPB2,CSNK1A1L,DCLK1,DGKH,DNAJC15,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,EXOSC8,FAM216B,FOXO1,FREM2,FRY,GPALPP1,GTF2F2,HMGB1,HSPH1,HTR2A,ITM2B,KATNAL1,KBTBD6,KBTBD7,KCTD4,KIAA0226L,KL,LACC1,LCP1,LHFP,LRCH1,LRRC63,MAB21L1,MED4,MEDAG,MRPS31,MTRF1,MTUS2,N4BP2L1,N4BP2L2,NAA16,NBEA,NHLRC3,NUDT15,NUFIP1,PDS5B,POSTN,PROSER1,RB1,RFC3,RFXAP,RGCC,RXFP2,SERP2,SERTM1,SIAH3,SLC25A15,SLC25A30,SLC7A1,SMAD9,SMIM2,SOHLH2,SPERT,SPG20,STARD13,STOML3,SUCLA2,SUPT20H,TEX26,TNFSF11,TPT1,TRPC4,TSC22D1,UBL3,UFM1,USPL1,VWA8,WBP4,ZAR1L,ZC3H13"
TCGA.DY.A0XA	13	30271527	71132804	13060	-0.6731	SMALL-LOSS	NONFOCAL	137	Too-Many
TCGA.AG.3594	13	31010343	36863860	2313	-0.615	SMALL-LOSS	NONFOCAL	23	"ALOX5AP,B3GALTL,BRCA2,CCDC169,CCDC169-SOHLH2,DCLK1,FRY,HMGB1,HSPH1,KL,MAB21L1,MEDAG,N4BP2L1,N4BP2L2,NBEA,PDS5B,RFC3,RXFP2,SOHLH2,STARD13,TEX26,USPL1,ZAR1L"
TCGA.AZ.4681	13	34157635	93519811	18635	-0.8965	SMALL-LOSS	NONFOCAL	149	Too-Many
TCGA.AA.3524	13	35766255	55782264	6763	-0.7923	SMALL-LOSS	NONFOCAL	107	Too-Many
TCGA.EI.6508	13	39829200	60819867	6383	-0.7498	SMALL-LOSS	NONFOCAL	92	"AKAP11,ALG11,ARL11,ATP7B,CAB39L,CCDC122,CCDC70,CDADC1,CKAP2,COG3,COG6,CPB2,CYSLTR2,DGKH,DHRS12,DIAPH3,DLEU7,DNAJC15,EBPL,ELF1,ENOX1,EPSTI1,ERICH6B,ESD,FAM124A,FAM216B,FNDC3A,FOXO1,GPALPP1,GTF2F2,HNRNPA1L2,HTR2A,INTS6,ITM2B,KBTBD6,KBTBD7,KCNRG,KCTD4,KIAA0226L,KPNA3,LACC1,LCP1,LECT1,LHFP,LPAR6,LRCH1,LRRC63,MED4,MLNR,MRPS31,MTRF1,NAA16,NEK3,NEK5,NUDT15,NUFIP1,OLFM4,PCDH17,PCDH8,PHF11,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RB1,RCBTB1,RCBTB2,RGCC,RNASEH2B,SERP2,SERPINE3,SETDB2,SIAH3,SLC25A15,SLC25A30,SMIM2,SPERT,SPRYD7,SUCLA2,SUGT1,THSD1,TNFSF11,TPT1,TRIM13,TSC22D1,UTP14C,VPS36,VWA8,WBP4,WDFY2,ZC3H13"
TCGA.AF.2693	13	42180805	46609039	1635	-0.5638	SMALL-LOSS	NONFOCAL	24	"AKAP11,CCDC122,COG3,DGKH,DNAJC15,ENOX1,EPSTI1,ERICH6B,FAM216B,GPALPP1,GTF2F2,KCTD4,LACC1,NUFIP1,SERP2,SIAH3,SLC25A30,SMIM2,SPERT,TNFSF11,TPT1,TSC22D1,VWA8,ZC3H13"
TCGA.DM.A1D8	13	42814314	46917468	1536	-1.0001	SMALL-LOSS	NONFOCAL	27	"AKAP11,CCDC122,COG3,CPB2,DGKH,DNAJC15,ENOX1,EPSTI1,ERICH6B,FAM216B,GPALPP1,GTF2F2,KCTD4,KIAA0226L,LACC1,LCP1,LRRC63,NUFIP1,SERP2,SIAH3,SLC25A30,SMIM2,SPERT,TNFSF11,TPT1,TSC22D1,ZC3H13"
TCGA.A6.3808.01A	13	44455075	46055320	65	-0.6259	SMALL-LOSS	NONFOCAL	11	"COG3,GPALPP1,GTF2F2,KCTD4,LACC1,NUFIP1,SERP2,SLC25A30,SMIM2,TPT1,TSC22D1"
TCGA.AA.3548	13	45568812	52569962	2205	-0.6633	SMALL-LOSS	NONFOCAL	47	"ARL11,ATP7B,CAB39L,CCDC70,CDADC1,COG3,CPB2,CYSLTR2,DHRS12,DLEU7,EBPL,ERICH6B,ESD,FAM124A,FNDC3A,GPALPP1,GTF2F2,HTR2A,INTS6,ITM2B,KCNRG,KCTD4,KIAA0226L,KPNA3,LCP1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NUDT15,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SIAH3,SLC25A30,SPERT,SPRYD7,SUCLA2,TPT1,TRIM13,WDFY2,ZC3H13"
TCGA.AA.3664	13	46227242	62160482	4536	-0.7837	SMALL-LOSS	NONFOCAL	61	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,CPB2,CYSLTR2,DHRS12,DIAPH3,DLEU7,EBPL,ESD,FAM124A,FNDC3A,HNRNPA1L2,HTR2A,INTS6,ITM2B,KCNRG,KIAA0226L,KPNA3,LCP1,LECT1,LPAR6,LRCH1,LRRC63,MED4,MLNR,NEK3,NEK5,NUDT15,OLFM4,PCDH17,PCDH20,PCDH8,PHF11,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SIAH3,SPERT,SPRYD7,SUCLA2,SUGT1,TDRD3,THSD1,TRIM13,UTP14C,VPS36,WDFY2,ZC3H13"
TCGA.AG.3594	13	48368126	115106995	22077	-0.6346	SMALL-LOSS	NONFOCAL	169	Too-Many
TCGA.AF.2693	13	48652589	54079364	1429	-0.556	SMALL-LOSS	NONFOCAL	40	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,CYSLTR2,DHRS12,DLEU7,EBPL,FAM124A,FNDC3A,HNRNPA1L2,INTS6,ITM2B,KCNRG,KPNA3,LECT1,LPAR6,MED4,MLNR,NEK3,NEK5,OLFM4,PCDH8,PHF11,RB1,RCBTB1,RCBTB2,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUGT1,THSD1,TRIM13,UTP14C,VPS36,WDFY2"
TCGA.CM.6675	13	49226251	57270300	2031	-1.075	SMALL-LOSS	NONFOCAL	35	"ALG11,ARL11,ATP7B,CAB39L,CCDC70,CDADC1,CKAP2,CYSLTR2,DHRS12,DLEU7,EBPL,FAM124A,FNDC3A,HNRNPA1L2,INTS6,KCNRG,KPNA3,LECT1,MLNR,NEK3,NEK5,OLFM4,PCDH8,PHF11,RCBTB1,RNASEH2B,SERPINE3,SETDB2,SPRYD7,SUGT1,THSD1,TRIM13,UTP14C,VPS36,WDFY2"
TCGA.G4.6322	13	56520697	83725337	8335	-0.8243	SMALL-LOSS	NONFOCAL	36	"BORA,CLN5,COMMD6,DACH1,DIAPH3,DIS3,EDNRB,FBXL3,IRG1,KCTD12,KLF12,KLF5,KLHL1,LMO7,LMO7DN,MYCBP2,MZT1,NDFIP2,PCDH17,PCDH20,PCDH9,PIBF1,POU4F1,PRR20A,PRR20B,PRR20C,PRR20D,PRR20E,RBM26,RNF219,SCEL,SLAIN1,SPRY2,TBC1D4,TDRD3,UCHL3"
TCGA.AU.3779	13	77418440	82662617	1667	-0.5449	SMALL-LOSS	NONFOCAL	13	"CLN5,EDNRB,FBXL3,IRG1,KCTD12,MYCBP2,NDFIP2,POU4F1,RBM26,RNF219,SCEL,SLAIN1,SPRY2"
TCGA.DY.A0XA	13	83486856	115106995	11638	-0.7542	SMALL-LOSS	NONFOCAL	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.QG.A5Z1	13	83899651	115106995	11448	-0.5894	SMALL-LOSS	NONFOCAL	91	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCT,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPC5,GPC6,GPR18,GPR180,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SLITRK1,SLITRK5,SLITRK6,SOX1,SOX21,SPACA7,STK24,TEX29,TEX30,TFDP1,TGDS,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AZ.4681	13	95543944	115106995	7998	-0.8661	SMALL-LOSS	NONFOCAL	82	"ABCC4,ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP11AUN,ATP4B,BIVM,BIVM-ERCC5,CARKD,CARS2,CCDC168,CDC16,CHAMP1,CLDN10,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DNAJC3,DOCK9,DZIP1,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,HS6ST3,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,LINC00452,LOC101928841,MBNL2,MCF2L,METTL21C,MYO16,NALCN,OXGR1,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,UGGT2,UPF3A,ZIC2,ZIC5"
TCGA.AU.3779	13	99281457	105262133	2581	-0.5764	SMALL-LOSS	NONFOCAL	24	"BIVM,BIVM-ERCC5,CCDC168,CLYBL,DOCK9,ERCC5,FGF14,GGACT,GPR18,GPR183,ITGBL1,KDELC1,METTL21C,NALCN,PCCA,SLC10A2,SLC15A1,TEX30,TM9SF2,TMTC4,TPP2,UBAC2,ZIC2,ZIC5"
TCGA.AA.3861.01A	13	99520433	101277831	101	-0.6158	SMALL-LOSS	NONFOCAL	11	"CLYBL,DOCK9,GGACT,GPR18,GPR183,PCCA,TM9SF2,TMTC4,UBAC2,ZIC2,ZIC5"
TCGA.A6.5665	13	110849168	115106995	1478	-0.5359	SMALL-LOSS	NONFOCAL	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.A6.5661	13	110862886	115106995	1465	-0.9683	SMALL-LOSS	NONFOCAL	36	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.AA.A01S	13	110984608	114318238	1285	-1.02685	SMALL-LOSS	NONFOCAL	27	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,COL4A2,CUL4A,DCUN1D2,F10,F7,GRTP1,ING1,LAMP1,LOC101928841,MCF2L,PCID2,PROZ,RAB20,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TUBGCP3"
TCGA.AA.A029.01A	13	111114401	115089311	282	-0.6077	SMALL-LOSS	NONFOCAL	35	"ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP11AUN,ATP4B,CARKD,CARS2,CDC16,CHAMP1,COL4A2,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,ING1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RAB20,RASA3,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TUBGCP3,UPF3A"
TCGA.A6.3808.01A	13	113728707	115089311	208	-1.0384	SMALL-LOSS	NONFOCAL	22	"ADPRHL1,ATP4B,CDC16,CHAMP1,CUL4A,DCUN1D2,F10,F7,GAS6,GRK1,GRTP1,LAMP1,LINC00452,LOC101928841,MCF2L,PCID2,PROZ,RASA3,TFDP1,TMCO3,TMEM255B,UPF3A"
TCGA.AG.A00Y.01A	14	19377557	20768798	31	-0.5518	SMALL-LOSS	NONFOCAL	20	"OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AA.A00L.01A	14	19377557	20781580	28	-0.7865	SMALL-LOSS	NONFOCAL	21	"CCNB1IP1,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEG,POTEM,TTC5"
TCGA.AA.A01K.01A	14	19377557	20844214	58	-0.5181	SMALL-LOSS	NONFOCAL	23	"CCNB1IP1,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,PARP2,POTEG,POTEM,TEP1,TTC5"
TCGA.AG.A00C.01A	14	19377557	20873563	90	-0.6692	SMALL-LOSS	NONFOCAL	23	"CCNB1IP1,OR11G2,OR11H12,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,PARP2,POTEG,POTEM,TEP1,TTC5"
TCGA.AA.A00O.01A	14	19377557	107282751	4890	-0.539	SMALL-LOSS	NONFOCAL	588	Too-Many
TCGA.AG.3891.01A	14	19558943	20501974	12	-0.9031	SMALL-LOSS	NONFOCAL	11	"OR11H2,OR4K1,OR4K14,OR4K15,OR4K2,OR4K5,OR4M1,OR4N2,OR4Q3,POTEG,POTEM"
TCGA.AA.A00Z.01A	14	20007510	101347007	84	-0.6612	SMALL-LOSS	NONFOCAL	531	Too-Many
TCGA.AG.4009.01A	14	20010070	20757749	18	-0.5396	SMALL-LOSS	NONFOCAL	18	"OR11G2,OR11H2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR4Q3,POTEM,TTC5"
TCGA.AA.3530	14	20224002	20825964	153	-0.7154	SMALL-LOSS	NONFOCAL	17	"CCNB1IP1,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,PARP2,TTC5"
TCGA.AA.3667	14	20224002	21026792	272	-0.7623	SMALL-LOSS	NONFOCAL	25	"APEX1,CCNB1IP1,KLHL33,OR11G2,OR11H4,OR11H6,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OSGEP,PARP2,PNP,RNASE10,RNASE9,TEP1,TMEM55B,TTC5"
TCGA.AA.3975	14	20224002	22261183	704	-0.707	SMALL-LOSS	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3598	14	20224002	22277135	711	-0.9121	SMALL-LOSS	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3581	14	20224002	22376026	764	-0.5235	SMALL-LOSS	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3693	14	20224002	22454286	814	-0.7734	SMALL-LOSS	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3819	14	20224002	22454286	813	-0.5814	SMALL-LOSS	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3591	14	20224002	22455613	815	-0.6605	SMALL-LOSS	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3972	14	20224002	22561465	854	-0.6914	SMALL-LOSS	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.CM.6172	14	20224002	33163781	4108	-0.6647	SMALL-LOSS	NONFOCAL	154	Too-Many
TCGA.G4.6294	14	20224002	38111869	5935	-0.7005	SMALL-LOSS	NONFOCAL	178	Too-Many
TCGA.DY.A1DF	14	20224002	39261391	6239	-0.5426	SMALL-LOSS	NONFOCAL	180	Too-Many
TCGA.D5.5538	14	20224002	45734496	7910	-0.5919	SMALL-LOSS	NONFOCAL	196	Too-Many
TCGA.D5.5540	14	20224002	49203472	8813	-0.7138	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.EI.6508	14	20224002	64604594	14030	-0.7182	SMALL-LOSS	NONFOCAL	295	Too-Many
TCGA.4N.A93T	14	20224002	81096698	19290	-0.7933	SMALL-LOSS	NONFOCAL	430	Too-Many
TCGA.F4.6854	14	20224002	97225707	24862	-0.5316	SMALL-LOSS	NONFOCAL	509	Too-Many
TCGA.CA.6715	14	20224002	98642736	25397	-0.8665	SMALL-LOSS	NONFOCAL	510	Too-Many
TCGA.EI.6881	14	20224002	106008644	27418	-0.5522	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.5M.AAT5	14	20224002	107285436	27539	-0.7486	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.A6.2671	14	20224002	107285436	27524	-0.6795	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.A6.2678	14	20224002	107285436	27543	-0.8184	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.A6.5656	14	20224002	107285436	27439	-0.7553	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.A6.5662	14	20224002	107285436	27450	-0.9773	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.A6.6138	14	20224002	107285436	27560	-0.5164	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.A6.6140	14	20224002	107285436	27564	-0.7038	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.A6.6652	14	20224002	107285436	27555	-0.7882	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.A6.A567	14	20224002	107285436	27346	-0.7667	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AA.3511	14	20224002	107285436	27489	-0.5215	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AA.3519	14	20224002	107285436	27545	-0.8029	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AA.A01T	14	20224002	107285436	27535	-0.6961	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AF.A56N	14	20224002	107285436	27465	-0.7718	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AG.3602	14	20224002	107285436	27431	-0.6935	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AG.3742	14	20224002	107285436	27360	-0.6796	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AU.3779	14	20224002	107285436	27544	-0.872	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AY.5543	14	20224002	107285436	27360	-0.6165	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AZ.4308	14	20224002	107285436	27534	-0.5997	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AZ.6603	14	20224002	107285436	27496	-0.6471	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AZ.6608	14	20224002	107285436	27470	-0.5642	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.CK.5912	14	20224002	107285436	27471	-0.773	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.CL.5918	14	20224002	107285436	27483	-0.5978	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.D5.6532	14	20224002	107285436	27531	-0.8378	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.D5.6533	14	20224002	107285436	27451	-0.6919	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.D5.6932	14	20224002	107285436	27491	-0.6282	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.DM.A28E	14	20224002	107285436	27477	-0.9053	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.DY.A1DG	14	20224002	107285436	27554	-0.5218	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.EI.6513	14	20224002	107285436	27552	-0.744	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.F5.6571	14	20224002	107285436	27501	-0.6222	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.NH.A50V	14	20224002	107285436	27379	-0.6063	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.NH.A6GB	14	20224002	107285436	27540	-0.6175	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.NH.A8F7	14	20224002	107285436	27451	-0.547	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.NH.A8F8	14	20224002	107285436	27543	-0.5606	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.SS.A7HO	14	20224002	107285436	27541	-0.7038	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.T9.A92H	14	20224002	107285436	27543	-0.733	SMALL-LOSS	NONFOCAL	583	Too-Many
TCGA.AG.3727	14	20226768	22410619	797	-0.7033	SMALL-LOSS	NONFOCAL	58	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4M1,OR4N2,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AA.3688	14	20332796	22354102	749	-0.7046	SMALL-LOSS	NONFOCAL	56	"ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K1,OR4K13,OR4K14,OR4K15,OR4K17,OR4K2,OR4K5,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219"
TCGA.AG.3893	14	20425910	29187126	3014	-0.5655	SMALL-LOSS	NONFOCAL	135	Too-Many
TCGA.AA.3561	14	20490611	68288579	14942	-0.9126	SMALL-LOSS	NONFOCAL	319	Too-Many
TCGA.AF.2693	14	20521103	24484458	1511	-0.5379	SMALL-LOSS	NONFOCAL	91	"ABHD4,ACIN1,AJUBA,ANG,AP1G2,APEX1,ARHGEF40,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CCNB1IP1,CDH24,CEBPE,CHD8,CMTM5,DAD1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EDDM3A,EDDM3B,EFS,HAUS4,HNRNPC,HOMEZ,IL25,JPH4,KLHL33,LRP10,METTL17,METTL3,MMP14,MRPL52,MYH6,MYH7,NDRG2,NGDN,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,OXA1L,PABPN1,PARP2,PNP,PPP1R3E,PRMT5,PSMB11,PSMB5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RNF212B,RPGRIP1,SALL2,SLC22A17,SLC39A2,SLC7A7,SLC7A8,SUPT16H,TEP1,THTPA,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZFHX2,ZNF219"
TCGA.AA.A02H.01A	14	20846491	21778718	139	-0.5481	SMALL-LOSS	NONFOCAL	32	"ANG,APEX1,ARHGEF40,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,NDRG2,OR5AU1,OR6S1,OSGEP,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SLC39A2,TEP1,TMEM253,TMEM55B,TPPP2,ZNF219"
TCGA.AG.3574	14	20859012	21810791	406	-0.8713	SMALL-LOSS	NONFOCAL	32	"ANG,APEX1,ARHGEF40,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,NDRG2,OR5AU1,OR6S1,OSGEP,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SLC39A2,TEP1,TMEM253,TMEM55B,TPPP2,ZNF219"
TCGA.AA.A00N.01A	14	20873563	21215698	37	-0.8365	SMALL-LOSS	NONFOCAL	14	"ANG,APEX1,EDDM3A,KLHL33,OR6S1,OSGEP,PNP,RNASE10,RNASE11,RNASE12,RNASE4,RNASE9,TEP1,TMEM55B"
TCGA.AA.A02E.01A	14	20927322	23389819	252	-0.7881	SMALL-LOSS	NONFOCAL	47	"ABHD4,ANG,ARHGEF40,CHD8,DAD1,EDDM3A,EDDM3B,HNRNPC,LRP10,METTL17,METTL3,MMP14,MRPL52,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,OR6S1,OXA1L,PNP,PRMT5,RAB2B,RBM23,REM2,RNASE1,RNASE10,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RPGRIP1,SALL2,SLC39A2,SLC7A7,SUPT16H,TMEM253,TMEM55B,TOX4,TPPP2,ZNF219"
TCGA.AG.A00C.01A	14	20942601	21486103	38	-0.5765	SMALL-LOSS	NONFOCAL	17	"ANG,EDDM3A,EDDM3B,METTL17,NDRG2,OR6S1,PNP,RNASE1,RNASE10,RNASE11,RNASE12,RNASE2,RNASE3,RNASE4,RNASE6,RNASE9,SLC39A2"
TCGA.AA.3667	14	21131450	22454286	488	-0.6582	SMALL-LOSS	NONFOCAL	30	"ANG,ARHGEF40,CHD8,EDDM3A,EDDM3B,HNRNPC,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR4E2,OR5AU1,RAB2B,RNASE1,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RPGRIP1,SALL2,SLC39A2,SUPT16H,TMEM253,TOX4,TPPP2,ZNF219"
TCGA.AA.A01K.01A	14	21462077	21802712	80	-0.7026	SMALL-LOSS	NONFOCAL	13	"ARHGEF40,HNRNPC,METTL17,NDRG2,OR5AU1,RNASE13,RNASE7,RNASE8,RPGRIP1,SLC39A2,TMEM253,TPPP2,ZNF219"
TCGA.AG.A00C.01A	14	21789971	23299044	123	-0.6884	SMALL-LOSS	NONFOCAL	14	"ABHD4,CHD8,DAD1,METTL3,OR10G2,OR10G3,OR4E2,OXA1L,RAB2B,RPGRIP1,SALL2,SLC7A7,SUPT16H,TOX4"
TCGA.AA.3819	14	22970255	107285436	26482	-0.6365	SMALL-LOSS	NONFOCAL	525	Too-Many
TCGA.AG.3591	14	22977221	34510445	3767	-0.6843	SMALL-LOSS	NONFOCAL	98	"ABHD4,ACIN1,ADCY4,AJUBA,AKAP6,AP1G2,AP4S1,ARHGAP5,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CBLN3,CDH24,CEBPE,CHMP4A,CIDEB,CMA1,CMTM5,COCH,CPNE6,CTSG,DAD1,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,DTD2,EFS,EGLN3,EMC9,FITM1,FOXG1,G2E3,GMPR2,GPR33,GZMB,GZMH,HAUS4,HEATR5A,HECTD1,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRP10,LRRC16B,LTB4R,LTB4R2,MDP1,MMP14,MRPL52,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NOVA1,NPAS3,NRL,NUBPL,NYNRIN,OXA1L,PABPN1,PCK2,PPP1R3E,PRKD1,PRMT5,PSMB11,PSMB5,PSME1,PSME2,RABGGTA,RBM23,REC8,REM2,RIPK3,RNF212B,RNF31,SCFD1,SDR39U1,SLC22A17,SLC7A7,SLC7A8,STRN3,STXBP6,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.3693	14	22978774	107285436	26467	-0.8632	SMALL-LOSS	NONFOCAL	525	Too-Many
TCGA.AA.3972	14	22983222	52384092	8794	-0.9281	SMALL-LOSS	NONFOCAL	165	Too-Many
TCGA.AG.3581	14	22983222	69155349	14159	-0.5688	SMALL-LOSS	NONFOCAL	268	Too-Many
TCGA.AG.3598	14	22983222	106000230	26296	-1.0076	SMALL-LOSS	NONFOCAL	525	Too-Many
TCGA.AG.3727	14	22988021	107285436	26468	-0.7921	SMALL-LOSS	NONFOCAL	525	Too-Many
TCGA.AA.3975	14	22993719	107285436	26411	-0.7736	SMALL-LOSS	NONFOCAL	525	Too-Many
TCGA.AA.3688	14	22999541	107285436	26466	-0.7849	SMALL-LOSS	NONFOCAL	525	Too-Many
TCGA.AA.3667	14	23099389	24425057	393	-0.676	SMALL-LOSS	NONFOCAL	37	"ACIN1,AJUBA,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CMTM5,DHRS2,DHRS4,EFS,HAUS4,HOMEZ,IL25,JPH4,LRP10,MMP14,MRPL52,MYH6,MYH7,NGDN,OXA1L,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A7,SLC7A8,THTPA,ZFHX2"
TCGA.CM.6170	14	23158794	107285436	26360	-0.5231	SMALL-LOSS	NONFOCAL	523	Too-Many
TCGA.AA.A02H.01A	14	23313532	23887138	161	-0.5524	SMALL-LOSS	NONFOCAL	27	"ACIN1,AJUBA,BCL2L2,BCL2L2-PABPN1,C14orf119,C14orf93,CDH24,CEBPE,CMTM5,EFS,HAUS4,HOMEZ,IL25,LRP10,MMP14,MYH6,MYH7,PABPN1,PPP1R3E,PRMT5,PSMB11,PSMB5,RBM23,REM2,RNF212B,SLC22A17,SLC7A8"
TCGA.AA.A01K.01A	14	23533265	24911329	391	-0.6614	SMALL-LOSS	NONFOCAL	60	"ACIN1,ADCY4,AP1G2,BCL2L2,BCL2L2-PABPN1,C14orf119,CBLN3,CEBPE,CHMP4A,CIDEB,CMTM5,CPNE6,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EFS,EMC9,FITM1,GMPR2,HOMEZ,IL25,IPO4,IRF9,JPH4,KHNYN,LRRC16B,LTB4R,LTB4R2,MDP1,MYH6,MYH7,NEDD8,NEDD8-MDP1,NFATC4,NGDN,NOP9,NRL,NYNRIN,PABPN1,PCK2,PPP1R3E,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF212B,RNF31,SDR39U1,SLC22A17,SLC7A8,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.A02E.01A	14	23586668	23947134	110	-0.555	SMALL-LOSS	NONFOCAL	15	"BCL2L2,BCL2L2-PABPN1,CEBPE,CMTM5,EFS,HOMEZ,IL25,MYH6,MYH7,NGDN,PABPN1,PPP1R3E,RNF212B,SLC22A17,SLC7A8"
TCGA.AA.A02H.01A	14	23890124	24808934	268	-0.6744	SMALL-LOSS	NONFOCAL	40	"ADCY4,AP1G2,CHMP4A,CIDEB,CPNE6,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,IPO4,IRF9,JPH4,LRRC16B,LTB4R,LTB4R2,MDP1,MYH7,NEDD8,NEDD8-MDP1,NGDN,NOP9,NRL,PCK2,PSME1,PSME2,RABGGTA,REC8,RIPK3,RNF31,TGM1,THTPA,TINF2,TM9SF1,TSSK4,ZFHX2"
TCGA.AA.A02E.01A	14	24025945	24776947	217	-0.9274	SMALL-LOSS	NONFOCAL	33	"AP1G2,CHMP4A,CIDEB,CPNE6,DCAF11,DHRS1,DHRS2,DHRS4,DHRS4L1,DHRS4L2,EMC9,FITM1,GMPR2,IPO4,IRF9,JPH4,LRRC16B,MDP1,NEDD8,NEDD8-MDP1,NOP9,NRL,PCK2,PSME1,PSME2,RABGGTA,REC8,RNF31,TGM1,THTPA,TINF2,TM9SF1,TSSK4"
TCGA.AA.3667	14	24489234	107285436	26007	-0.7747	SMALL-LOSS	NONFOCAL	485	Too-Many
TCGA.CK.5914.01A	14	24568757	24710864	99	-0.8793	SMALL-LOSS	NONFOCAL	18	"CHMP4A,DCAF11,EMC9,FITM1,GMPR2,IPO4,IRF9,MDP1,NEDD8,NEDD8-MDP1,PCK2,PSME1,PSME2,REC8,RNF31,TINF2,TM9SF1,TSSK4"
TCGA.AA.A00N.01A	14	24620292	24769152	92	-0.547	SMALL-LOSS	NONFOCAL	16	"CHMP4A,DHRS1,GMPR2,IPO4,IRF9,MDP1,NEDD8,NEDD8-MDP1,NOP9,RABGGTA,REC8,RNF31,TGM1,TINF2,TM9SF1,TSSK4"
TCGA.AG.3909.01A	14	24735940	24911876	86	-0.8038	SMALL-LOSS	NONFOCAL	13	"ADCY4,CBLN3,CIDEB,DHRS1,KHNYN,LTB4R,LTB4R2,NFATC4,NOP9,NYNRIN,RABGGTA,RIPK3,SDR39U1"
TCGA.AG.A00C.01A	14	24900629	31857979	190	-0.7152	SMALL-LOSS	NONFOCAL	17	"AP4S1,CMA1,COCH,CTSG,FOXG1,G2E3,GZMB,GZMH,HEATR5A,HECTD1,KHNYN,NOVA1,PRKD1,SCFD1,SDR39U1,STRN3,STXBP6"
TCGA.AA.3530	14	24954201	37489007	4097	-0.5917	SMALL-LOSS	NONFOCAL	42	"AKAP6,AP4S1,ARHGAP5,BAZ1A,BRMS1L,CFL2,CMA1,COCH,CTSG,DTD2,EAPP,EGLN3,FAM177A1,FOXG1,G2E3,GPR33,GZMB,GZMH,HEATR5A,HECTD1,INSM2,KIAA0391,MBIP,NFKBIA,NKX2-1,NKX2-8,NOVA1,NPAS3,NUBPL,PAX9,PPP2R3C,PRKD1,PSMA6,RALGAPA1,SCFD1,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,STRN3,STXBP6"
TCGA.F5.6864	14	31552619	37590163	2221	-0.549	SMALL-LOSS	NONFOCAL	30	"AKAP6,AP4S1,ARHGAP5,BAZ1A,BRMS1L,CFL2,DTD2,EAPP,EGLN3,FAM177A1,GPR33,HEATR5A,HECTD1,INSM2,KIAA0391,MBIP,NFKBIA,NKX2-1,NKX2-8,NPAS3,NUBPL,PAX9,PPP2R3C,PSMA6,RALGAPA1,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54"
TCGA.AA.3524	14	31708028	41262194	3135	-0.722	SMALL-LOSS	NONFOCAL	39	"AKAP6,ARHGAP5,BAZ1A,BRMS1L,CFL2,CLEC14A,CTAGE5,DTD2,EAPP,EGLN3,FAM177A1,FBXO33,FOXA1,GEMIN2,GPR33,HEATR5A,INSM2,KIAA0391,MBIP,MIA2,MIPOL1,NFKBIA,NKX2-1,NKX2-8,NPAS3,NUBPL,PAX9,PNN,PPP2R3C,PSMA6,RALGAPA1,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,TRAPPC6B"
TCGA.AA.3979	14	31938907	77988647	14406	-0.968	SMALL-LOSS	NONFOCAL	272	Too-Many
TCGA.AA.3860	14	33485336	47696064	4137	-0.6552	SMALL-LOSS	NONFOCAL	44	"BAZ1A,BRMS1L,C14orf28,CFL2,CLEC14A,CTAGE5,EAPP,EGLN3,FAM177A1,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FSCB,GEMIN2,INSM2,KIAA0391,KLHL28,LRFN5,MBIP,MDGA2,MIA2,MIPOL1,MIS18BP1,NFKBIA,NKX2-1,NKX2-8,NPAS3,PAX9,PNN,PPP2R3C,PRPF39,PSMA6,RALGAPA1,RPL10L,SEC23A,SFTA3,SLC25A21,SNX6,SPTSSA,SRP54,SSTR1,TRAPPC6B"
TCGA.AG.A00C.01A	14	35044924	39554923	206	-0.627	SMALL-LOSS	NONFOCAL	23	"BAZ1A,BRMS1L,CFL2,CLEC14A,FAM177A1,FOXA1,INSM2,KIAA0391,MBIP,MIPOL1,NFKBIA,NKX2-1,NKX2-8,PAX9,PPP2R3C,PSMA6,RALGAPA1,SEC23A,SFTA3,SLC25A21,SNX6,SRP54,SSTR1"
TCGA.AA.A02E.01A	14	35739570	50050288	302	-0.5212	SMALL-LOSS	NONFOCAL	35	"BRMS1L,C14orf28,CLEC14A,CTAGE5,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FSCB,GEMIN2,INSM2,KIAA0391,KLHL28,LRFN5,MBIP,MDGA2,MIA2,MIPOL1,MIS18BP1,NFKBIA,NKX2-1,NKX2-8,PAX9,PNN,PRPF39,PSMA6,RALGAPA1,RPL10L,RPS29,SEC23A,SFTA3,SLC25A21,SSTR1,TRAPPC6B"
TCGA.CK.6748	14	35821691	46983977	3014	-0.992	SMALL-LOSS	NONFOCAL	30	"BRMS1L,C14orf28,CLEC14A,CTAGE5,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FSCB,GEMIN2,INSM2,KLHL28,LRFN5,MBIP,MIA2,MIPOL1,MIS18BP1,NFKBIA,NKX2-1,NKX2-8,PAX9,PNN,PRPF39,RALGAPA1,SEC23A,SFTA3,SLC25A21,SSTR1,TRAPPC6B"
TCGA.AG.3891.01A	14	35872308	38311353	111	-0.5952	SMALL-LOSS	NONFOCAL	12	"BRMS1L,FOXA1,INSM2,MBIP,MIPOL1,NFKBIA,NKX2-1,NKX2-8,PAX9,RALGAPA1,SFTA3,SLC25A21"
TCGA.AA.3530	14	37494898	47417587	2488	-0.7	SMALL-LOSS	NONFOCAL	23	"C14orf28,CLEC14A,CTAGE5,FAM179B,FANCM,FBXO33,FKBP3,FOXA1,FSCB,GEMIN2,KLHL28,LRFN5,MDGA2,MIA2,MIPOL1,MIS18BP1,PNN,PRPF39,RPL10L,SEC23A,SLC25A21,SSTR1,TRAPPC6B"
TCGA.G4.6294	14	38174457	72723963	10485	-0.7058	SMALL-LOSS	NONFOCAL	173	Too-Many
TCGA.AA.3526	14	39974872	79457311	12336	-0.6421	SMALL-LOSS	NONFOCAL	241	Too-Many
TCGA.AA.3982	14	40133699	47417587	1854	-0.5957	SMALL-LOSS	NONFOCAL	11	"C14orf28,FAM179B,FANCM,FKBP3,FSCB,KLHL28,LRFN5,MDGA2,MIS18BP1,PRPF39,RPL10L"
TCGA.AA.3850	14	40138561	47801256	1963	-0.81135	SMALL-LOSS	NONFOCAL	11	"C14orf28,FAM179B,FANCM,FKBP3,FSCB,KLHL28,LRFN5,MDGA2,MIS18BP1,PRPF39,RPL10L"
TCGA.AA.3844	14	40139848	47417587	1852	-0.6161	SMALL-LOSS	NONFOCAL	11	"C14orf28,FAM179B,FANCM,FKBP3,FSCB,KLHL28,LRFN5,MDGA2,MIS18BP1,PRPF39,RPL10L"
TCGA.AA.3811	14	41932152	47417587	1310	-0.6406	SMALL-LOSS	NONFOCAL	11	"C14orf28,FAM179B,FANCM,FKBP3,FSCB,KLHL28,LRFN5,MDGA2,MIS18BP1,PRPF39,RPL10L"
TCGA.D5.5538	14	46149328	107285436	19552	-0.6116	SMALL-LOSS	NONFOCAL	387	Too-Many
TCGA.AA.3860	14	47722553	107285436	19164	-0.6563	SMALL-LOSS	NONFOCAL	386	Too-Many
TCGA.A6.3808.01A	14	48143667	50895350	162	-0.5425	SMALL-LOSS	NONFOCAL	17	"ARF6,ATP5S,CDKL1,DNAAF2,KLHDC1,KLHDC2,L2HGDH,LRR1,MAP4K5,MDGA2,MGAT2,NEMF,POLE2,RPL36AL,RPS29,SOS2,VCPKMT"
TCGA.D5.5540	14	49833500	85694884	11760	-0.6965	SMALL-LOSS	NONFOCAL	236	Too-Many
TCGA.AA.A02E.01A	14	50069056	65055848	1061	-0.5751	SMALL-LOSS	NONFOCAL	103	Too-Many
TCGA.AG.A00C.01A	14	50863758	53133046	205	-0.6732	SMALL-LOSS	NONFOCAL	18	"ABHD12B,ATL1,C14orf166,CDKL1,ERO1L,FRMD6,GNG2,GPR137C,MAP4K5,NID2,NIN,PTGDR,PTGER2,PYGL,SAV1,TMX1,TRIM9,TXNDC16"
TCGA.AA.3972	14	52421594	107285436	17626	-0.8343	SMALL-LOSS	NONFOCAL	361	Too-Many
TCGA.AG.A00C.01A	14	54976671	64911345	623	-0.6229	SMALL-LOSS	NONFOCAL	58	"ACTR10,AP5M1,ARID4A,ATG14,C14orf105,C14orf37,C14orf39,CCDC175,CGRRF1,DAAM1,DACT1,DHRS7,DLGAP5,ESR2,EXOC5,FBXO34,GCH1,GPHB5,GPR135,HIF1A,JKAMP,KCNH5,KIAA0586,KTN1,L3HYPDH,LGALS3,MAPK1IP1L,MNAT1,MTHFD1,NAA30,OTX2,PCNXL4,PELI2,PPM1A,PPP2R5E,PRKCH,PSMA3,RHOJ,RTN1,SAMD4A,SGPP1,SIX1,SIX4,SIX6,SLC35F4,SLC38A6,SNAPC1,SOCS4,SYNE2,SYT16,TBPL2,TIMM9,TMEM260,TMEM30B,TOMM20L,TRMT5,WDHD1,WDR89"
TCGA.A6.3807	14	58750901	60782369	613	-0.8804	SMALL-LOSS	NONFOCAL	14	"ARID4A,CCDC175,DAAM1,DACT1,DHRS7,GPR135,JKAMP,KIAA0586,L3HYPDH,PCNXL4,PPM1A,RTN1,TIMM9,TOMM20L"
TCGA.DM.A1HA	14	60084711	107285436	14837	-0.9362	SMALL-LOSS	NONFOCAL	311	Too-Many
TCGA.AA.3952	14	62728319	107285436	14093	-0.5979	SMALL-LOSS	NONFOCAL	295	Too-Many
TCGA.A6.3808.01A	14	63881813	65216652	193	-0.6851	SMALL-LOSS	NONFOCAL	13	"AKAP5,ESR2,HSPA2,MTHFD1,PLEKHG3,PPP1R36,PPP2R5E,SGPP1,SPTB,SYNE2,WDR89,ZBTB1,ZBTB25"
TCGA.DC.4745	14	64143824	104047756	13273	-0.8335	SMALL-LOSS	NONFOCAL	257	Too-Many
TCGA.AA.A02E.01A	14	65207702	76431891	868	-0.5836	SMALL-LOSS	NONFOCAL	100	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACTN1,ACYP1,ADAM20,ADAM21,ALDH6A1,AREL1,ARG2,ATP6V1D,BATF,C14orf1,C14orf169,CCDC176,CCDC177,CHURC1,CHURC1-FNTB,COQ6,COX16,DCAF4,DCAF5,DLST,DNAL1,DPF3,EIF2B2,EIF2S1,ELMSAN1,ENTPD5,ERH,EXD2,FAM161B,FAM71D,FCF1,FLVCR2,FNTB,FOS,FUT8,GALNT16,GPHN,GPX2,HEATR4,ISCA2,JDP2,LIN52,LTBP2,MAP3K9,MAX,MED6,MLH3,MPP5,NEK9,NPC2,NUMB,PAPLN,PCNX,PGF,PIGH,PLEK2,PLEKHD1,PLEKHG3,PLEKHH1,PNMA1,PROX2,PSEN1,PTGR2,RAB15,RAD51B,RBM25,RDH11,RDH12,RGS6,RPS6KL1,SIPA1L1,SLC10A1,SLC39A9,SLC8A3,SMOC1,SPTB,SRSF5,SUSD6,SYNDIG1L,SYNJ2BP,SYNJ2BP-COX16,TGFB3,TMED10,TMEM229B,TTC9,TTLL5,VRTN,VSX2,VTI1B,YLPM1,ZC2HC1C,ZFP36L1,ZFYVE1,ZFYVE26,ZNF410"
TCGA.AG.A00C.01A	14	67243112	70177612	241	-0.6596	SMALL-LOSS	NONFOCAL	25	"ACTN1,ARG2,ATP6V1D,CCDC177,DCAF5,EIF2S1,ERH,EXD2,FAM71D,GALNT16,GPHN,MPP5,PIGH,PLEK2,PLEKHD1,PLEKHH1,RAD51B,RDH11,RDH12,SLC39A9,SUSD6,TMEM229B,VTI1B,ZFP36L1,ZFYVE26"
TCGA.AA.3558	14	69116147	70434754	428	-0.9519	SMALL-LOSS	NONFOCAL	13	"ACTN1,CCDC177,DCAF5,ERH,EXD2,GALNT16,PLEKHD1,SLC10A1,SLC39A9,SMOC1,SRSF5,SUSD6,ZFP36L1"
TCGA.AA.3679	14	69707354	107285436	12108	-0.7528	SMALL-LOSS	NONFOCAL	254	Too-Many
TCGA.AG.A00C.01A	14	70263500	71428906	55	-0.7896	SMALL-LOSS	NONFOCAL	12	"ADAM20,ADAM21,COX16,MAP3K9,MED6,PCNX,SLC10A1,SLC8A3,SMOC1,SYNJ2BP,SYNJ2BP-COX16,TTC9"
TCGA.A6.2679	14	71176897	76027854	1527	-0.6908	SMALL-LOSS	NONFOCAL	51	"ABCD4,ACOT1,ACOT2,ACOT4,ACOT6,ACYP1,ALDH6A1,AREL1,BATF,C14orf169,CCDC176,COQ6,DCAF4,DLST,DNAL1,DPF3,EIF2B2,ELMSAN1,ENTPD5,FAM161B,FCF1,FOS,HEATR4,ISCA2,JDP2,LIN52,LTBP2,MAP3K9,MLH3,NEK9,NPC2,NUMB,PAPLN,PCNX,PGF,PNMA1,PROX2,PSEN1,PTGR2,RBM25,RGS6,RPS6KL1,SIPA1L1,SYNDIG1L,TMED10,VRTN,VSX2,YLPM1,ZC2HC1C,ZFYVE1,ZNF410"
TCGA.CM.6675	14	73201904	103839997	10472	-1.0554	SMALL-LOSS	NONFOCAL	194	Too-Many
TCGA.DM.A0XF	14	73219451	107285436	10869	-0.5547	SMALL-LOSS	NONFOCAL	232	Too-Many
TCGA.AG.3909.01A	14	73945263	74362967	59	-0.5172	SMALL-LOSS	NONFOCAL	11	"ACOT1,ACOT2,ACOT4,ACOT6,C14orf169,DNAL1,ELMSAN1,HEATR4,PNMA1,PTGR2,ZNF410"
TCGA.AA.A02E.01A	14	76446853	99931990	1055	-0.5365	SMALL-LOSS	NONFOCAL	112	Too-Many
TCGA.AG.4009.01A	14	77236260	77860934	86	-0.6708	SMALL-LOSS	NONFOCAL	13	"ANGEL1,CIPC,GSTZ1,IRF2BPL,LRRC74A,NGB,NOXRED1,POMT2,SAMD15,TMED8,TMEM63C,VASH1,ZDHHC22"
TCGA.AA.3979	14	78198448	107285436	9296	-1.0527	SMALL-LOSS	NONFOCAL	159	Too-Many
TCGA.AG.A00C.01A	14	78325387	89016561	155	-0.7282	SMALL-LOSS	NONFOCAL	14	"ADCK1,CEP128,DIO2,FLRT2,GALC,GPR65,GTF2A1,KCNK10,NRXN3,PTPN21,SEL1L,SPATA7,STON2,TSHR"
TCGA.D5.5540	14	85874557	107285436	6729	-0.731	SMALL-LOSS	NONFOCAL	149	Too-Many
TCGA.4N.A93T	14	86163699	107285436	6597	-0.8961	SMALL-LOSS	NONFOCAL	148	Too-Many
TCGA.AG.A00C.01A	14	89205183	93142782	288	-0.6078	SMALL-LOSS	NONFOCAL	24	"ATXN3,C14orf159,CALM1,CATSPERB,CCDC88C,CPSF2,EFCAB11,EML5,FBLN5,FOXN3,GPR68,KCNK13,NDUFB1,NRDE2,PSMC1,RIN3,RPS6KA5,SLC24A4,SMEK1,TC2N,TDP1,TRIP11,TTC7B,TTC8"
TCGA.AA.A00J.01A	14	89341345	107034732	1089	-0.6672	SMALL-LOSS	NONFOCAL	141	Too-Many
TCGA.A6.2677	14	90193977	98123118	2805	-0.9442	SMALL-LOSS	NONFOCAL	66	"AK7,ASB2,ATG2B,ATXN3,BDKRB1,BDKRB2,BTBD7,C14orf132,C14orf142,C14orf159,CALM1,CATSPERB,CCDC88C,CHGA,CLMN,COX8C,CPSF2,DDX24,DICER1,EFCAB11,FAM181A,FBLN5,GLRX5,GOLGA5,GPR68,GSC,GSKIP,IFI27,IFI27L1,IFI27L2,ITPK1,KCNK13,LGMN,MOAP1,NDUFB1,NRDE2,OTUB2,PAPOLA,PPP4R4,PRIMA1,PSMC1,RIN3,RPS6KA5,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SLC24A4,SMEK1,SYNE3,TC2N,TCL1A,TCL1B,TDP1,TMEM251,TRIP11,TTC7B,UBR7,UNC79,VRK1"
TCGA.AG.A00C.01A	14	93688588	96794653	263	-0.7256	SMALL-LOSS	NONFOCAL	34	"ASB2,ATG2B,BDKRB1,BDKRB2,BTBD7,C14orf132,CLMN,COX8C,DDX24,DICER1,FAM181A,GLRX5,GSC,IFI27,IFI27L1,IFI27L2,OTUB2,PPP4R4,PRIMA1,SERPINA1,SERPINA10,SERPINA11,SERPINA12,SERPINA2,SERPINA3,SERPINA4,SERPINA5,SERPINA6,SERPINA9,SYNE3,TCL1A,TCL1B,UBR7,UNC79"
TCGA.CA.6715	14	98654323	107285436	2032	-0.9842	SMALL-LOSS	NONFOCAL	73	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.A02E.01A	14	99958963	107282751	545	-0.8917	SMALL-LOSS	NONFOCAL	70	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BEGAIN,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.EI.6883	14	100266301	102698033	616	-0.6872	SMALL-LOSS	NONFOCAL	17	"BEGAIN,DEGS2,DIO3,DLK1,DYNC1H1,EML1,EVL,HSP90AA1,MOK,PPP2R5C,RTL1,SLC25A29,SLC25A47,WARS,WDR20,WDR25,YY1"
TCGA.AA.A00N.01A	14	100595858	102461003	127	-0.5686	SMALL-LOSS	NONFOCAL	13	"BEGAIN,DEGS2,DIO3,DLK1,DYNC1H1,EVL,PPP2R5C,RTL1,SLC25A29,SLC25A47,WARS,WDR25,YY1"
TCGA.EI.6511	14	100730919	107285436	1103	-0.5875	SMALL-LOSS	NONFOCAL	63	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BEGAIN,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DLK1,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RTL1,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839"
TCGA.AA.A01K.01A	14	101495942	107282751	429	-0.6252	SMALL-LOSS	NONFOCAL	55	"ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP2,DIO3,DYNC1H1,EIF5,EXOC3L4,GPR132,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,SIVA1,TDRD9,TECPR2,TEX22,TMEM121,TMEM179,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZBTB42,ZFYVE21,ZNF839"
TCGA.A6.3808.01A	14	102027794	104429379	301	-0.9763	SMALL-LOSS	NONFOCAL	29	"AMN,ANKRD9,APOPT1,BAG5,C14orf2,CDC42BPB,CINP,CKB,DIO3,DYNC1H1,EIF5,EXOC3L4,HSP90AA1,KLC1,MARK3,MOK,PPP1R13B,PPP2R5C,RCOR1,RD3L,TDRD9,TECPR2,TNFAIP2,TRAF3,TRMT61A,WDR20,XRCC3,ZFYVE21,ZNF839"
TCGA.AA.A00N.01A	14	102568185	103420884	88	-0.5563	SMALL-LOSS	NONFOCAL	11	"AMN,ANKRD9,CDC42BPB,CINP,HSP90AA1,MOK,RCOR1,TECPR2,TRAF3,WDR20,ZNF839"
TCGA.G4.6322	14	103883348	106764924	305	-1.0118	SMALL-LOSS	NONFOCAL	38	"ADSSL1,AHNAK2,AKT1,APOPT1,ASPG,BAG5,BRF1,BTBD6,C14orf180,C14orf2,C14orf79,C14orf80,CDCA4,CEP170B,CKB,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,KLC1,MARK3,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,RD3L,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,TRMT61A,XRCC3,ZBTB42,ZFYVE21"
TCGA.AA.3939.01A	14	104464913	105687947	153	-0.5273	SMALL-LOSS	NONFOCAL	19	"ADSSL1,AHNAK2,AKT1,ASPG,BRF1,C14orf180,C14orf79,CDCA4,CEP170B,GPR132,INF2,JAG2,KIF26A,NUDT14,PLD4,SIVA1,TDRD9,TMEM179,ZBTB42"
TCGA.AG.3891.01A	14	104482281	107282751	258	-0.5273	SMALL-LOSS	NONFOCAL	27	"ADSSL1,AHNAK2,AKT1,ASPG,BRF1,BTBD6,C14orf180,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,INF2,JAG2,KIF26A,MTA1,NUDT14,PACS2,PLD4,SIVA1,TDRD9,TEX22,TMEM121,TMEM179,ZBTB42"
TCGA.CK.5914.01A	14	104558921	105406333	114	-0.5167	SMALL-LOSS	NONFOCAL	12	"ADSSL1,AHNAK2,AKT1,ASPG,C14orf180,CEP170B,INF2,KIF26A,PLD4,SIVA1,TMEM179,ZBTB42"
TCGA.DY.A1DC	14	105086474	107285436	180	-0.8012	SMALL-LOSS	NONFOCAL	22	"ADSSL1,AHNAK2,AKT1,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CEP170B,CRIP1,CRIP2,GPR132,INF2,JAG2,MTA1,NUDT14,PACS2,PLD4,SIVA1,TEX22,TMEM121,ZBTB42"
TCGA.CK.5914.01A	14	105415323	106370269	174	-0.5886	SMALL-LOSS	NONFOCAL	15	"AHNAK2,BRF1,BTBD6,C14orf79,C14orf80,CDCA4,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,TEX22,TMEM121"
TCGA.AG.4009.01A	14	105517319	105995135	38	-0.5563	SMALL-LOSS	NONFOCAL	12	"BRF1,BTBD6,C14orf80,CRIP1,CRIP2,GPR132,JAG2,MTA1,NUDT14,PACS2,TEX22,TMEM121"
TCGA.AG.3591	15	20143408	24198151	322	-0.7636	SMALL-LOSS	NONFOCAL	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AM.5820	15	20143408	24198151	322	-0.8004	SMALL-LOSS	NONFOCAL	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.AA.3560	15	20143408	24503670	407	-0.8127	SMALL-LOSS	NONFOCAL	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.D5.6538	15	20143408	24503670	406	-0.6818	SMALL-LOSS	NONFOCAL	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.DM.A1D4	15	20143408	24503670	408	-0.8694	SMALL-LOSS	NONFOCAL	16	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,TUBGCP5"
TCGA.A6.5656	15	20143408	25417123	617	-0.7803	SMALL-LOSS	NONFOCAL	19	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5"
TCGA.AG.3612	15	20143408	25864061	776	-1.0162	SMALL-LOSS	NONFOCAL	20	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.DM.A285	15	20143408	26152729	936	-0.5852	SMALL-LOSS	NONFOCAL	21	"ATP10A,CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5,UBE3A"
TCGA.4N.A93T	15	20143408	34671123	3551	-0.8723	SMALL-LOSS	NONFOCAL	61	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.RU.A8FL	15	20143408	38206269	4764	-0.5543	SMALL-LOSS	NONFOCAL	70	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,C15orf41,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AY.4071	15	20143408	44057044	6278	-0.5548	SMALL-LOSS	NONFOCAL	160	Too-Many
TCGA.D5.6932	15	20143408	44973787	6416	-0.623	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.D5.5538	15	20143408	47530431	7172	-0.6224	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.DM.A28F	15	20143408	48849771	7653	-0.6038	SMALL-LOSS	NONFOCAL	195	Too-Many
TCGA.AG.3893	15	20143408	57320663	10203	-0.5245	SMALL-LOSS	NONFOCAL	247	Too-Many
TCGA.AA.3678	15	20143408	60031883	11456	-0.5192	SMALL-LOSS	NONFOCAL	265	Too-Many
TCGA.AA.3544	15	20143408	60444721	11620	-0.7589	SMALL-LOSS	NONFOCAL	266	Too-Many
TCGA.EI.6881	15	20143408	61688168	12233	-0.5685	SMALL-LOSS	NONFOCAL	269	Too-Many
TCGA.CM.6675	15	20143408	61895640	12337	-1.0415	SMALL-LOSS	NONFOCAL	269	Too-Many
TCGA.AG.A026	15	20143408	64592521	13352	-0.5277	SMALL-LOSS	NONFOCAL	288	Too-Many
TCGA.EF.5830	15	20143408	71719894	15375	-0.7641	SMALL-LOSS	NONFOCAL	349	Too-Many
TCGA.DM.A1HA	15	20143408	86774761	19141	-0.959	SMALL-LOSS	NONFOCAL	490	Too-Many
TCGA.AA.3870	15	20143408	88635679	19993	-0.5357	SMALL-LOSS	NONFOCAL	491	Too-Many
TCGA.AA.3973	15	20143408	94361808	22294	-0.9406	SMALL-LOSS	NONFOCAL	540	Too-Many
TCGA.5M.AATE	15	20143408	102400036	25504	-0.5908	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.A6.2677	15	20143408	102400036	23504	-0.6919	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.A6.A567	15	20143408	102400036	25307	-0.8064	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.AA.3511	15	20143408	102400036	25445	-0.5364	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.AA.3548	15	20143408	102400036	25516	-0.7113	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.AA.3673	15	20143408	102400036	25523	-0.6043	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.AA.3975	15	20143408	102400036	25471	-0.7891	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.AG.3742	15	20143408	102400036	25324	-0.7005	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.AY.5543	15	20143408	102400036	25315	-0.6176	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.CM.6170	15	20143408	102400036	25500	-0.5268	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.CM.6677	15	20143408	102400036	25397	-0.5442	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.D5.6533	15	20143408	102400036	25427	-0.6717	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.DM.A1D0	15	20143408	102400036	25347	-0.7536	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.DM.A1D9	15	20143408	102400036	25481	-0.7388	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.DY.A1DD	15	20143408	102400036	25505	-0.8606	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.EI.6883	15	20143408	102400036	25451	-0.6707	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.F4.6854	15	20143408	102400036	25443	-0.552	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.F5.6571	15	20143408	102400036	25455	-0.6462	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.F5.6813	15	20143408	102400036	25467	-0.5246	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.G4.6317	15	20143408	102400036	25507	-0.7734	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.NH.A50V	15	20143408	102400036	25338	-0.6297	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.QL.A97D	15	20143408	102400036	25503	-0.5389	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.T9.A92H	15	20143408	102400036	25504	-0.7421	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.CM.5341	15	20143650	55020273	9702	-0.9086	SMALL-LOSS	NONFOCAL	232	Too-Many
TCGA.AA.A01T	15	20143650	70499874	15056	-0.6739	SMALL-LOSS	NONFOCAL	343	Too-Many
TCGA.AZ.4681	15	20143650	89080973	20153	-0.6072	SMALL-LOSS	NONFOCAL	494	Too-Many
TCGA.AA.3549	15	20143650	102400036	25517	-0.681	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.A6.6780	15	20549877	34763615	3536	-0.6624	SMALL-LOSS	NONFOCAL	62	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.A6.3808.01A	15	20588543	25219503	91	-1.0115	SMALL-LOSS	NONFOCAL	19	"CYFIP1,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,MAGEL2,MKRN3,NDN,NIPA1,NIPA2,NPAP1,OR4M2,OR4N4,POTEB,POTEB2,POTEB3,SNRPN,SNURF,TUBGCP5"
TCGA.DM.A28M.01A	15	20588543	34673675	611	-0.5629	SMALL-LOSS	NONFOCAL	62	"APBA2,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PGBD4,POTEB,POTEB2,POTEB3,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AG.A00Y.01A	15	20588543	40587120	812	-0.5361	SMALL-LOSS	NONFOCAL	87	"ACTC1,ANKRD63,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,BMF,BUB1B,C15orf41,C15orf53,C15orf54,C15orf56,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,DPH6,EIF2AK4,EMC4,EMC7,FAM189A1,FAM98B,FAN1,FMN1,FSIP1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L1,GOLGA6L2,GOLGA6L22,GOLGA6L6,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GPR176,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MEIS2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OR4M2,OR4N4,OTUD7A,PAK6,PGBD4,PLCB2,POTEB,POTEB2,POTEB3,RASGRP1,RYR3,SCG5,SLC12A6,SNRPN,SNURF,SPRED1,SRP14,THBS1,TJP1,TMCO5A,TRPM1,TUBGCP5,UBE3A,ZNF770"
TCGA.AA.3967.01A	15	20662885	41366526	993	-0.6507	SMALL-LOSS	NONFOCAL	111	Too-Many
TCGA.CM.6165.01A	15	22368529	67462826	3764	-0.6176	SMALL-LOSS	NONFOCAL	320	Too-Many
TCGA.G4.6294	15	22582901	43436409	6236	-0.7529	SMALL-LOSS	NONFOCAL	138	Too-Many
TCGA.A6.2678	15	22765682	44959131	6409	-0.8329	SMALL-LOSS	NONFOCAL	165	Too-Many
TCGA.AA.3848	15	22765682	45170488	6484	-0.6012	SMALL-LOSS	NONFOCAL	167	Too-Many
TCGA.AA.A022	15	22765682	48087617	7417	-0.6838	SMALL-LOSS	NONFOCAL	182	Too-Many
TCGA.AF.A56N	15	22765682	60718740	11692	-0.7587	SMALL-LOSS	NONFOCAL	261	Too-Many
TCGA.AA.3979	15	22765682	102400036	25404	-1.0174	SMALL-LOSS	NONFOCAL	559	Too-Many
TCGA.AZ.4684.01A	15	22833478	35256362	636	-0.5467	SMALL-LOSS	NONFOCAL	59	"ACTC1,APBA2,AQR,ARHGAP11A,ARHGAP11B,ATP10A,AVEN,CHRFAM7A,CHRM5,CHRNA7,CYFIP1,EMC4,EMC7,FAM189A1,FAN1,FMN1,GABRA5,GABRB3,GABRG3,GJD2,GOLGA6L2,GOLGA6L22,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KATNBL1,KLF13,LOC283710,LPCAT4,MAGEL2,MKRN3,MTMR10,NDN,NDNL2,NIPA1,NIPA2,NOP10,NPAP1,NUTM1,OCA2,OTUD7A,PGBD4,RYR3,SCG5,SLC12A6,SNRPN,SNURF,TJP1,TRPM1,TUBGCP5,UBE3A"
TCGA.AG.3909.01A	15	23060764	28259934	89	-0.6317	SMALL-LOSS	NONFOCAL	15	"ATP10A,GABRA5,GABRB3,GABRG3,GOLGA6L2,GOLGA6L22,MAGEL2,MKRN3,NDN,NIPA1,NPAP1,OCA2,SNRPN,SNURF,UBE3A"
TCGA.DY.A1DF	15	23654206	102400036	25399	-0.592	SMALL-LOSS	NONFOCAL	554	Too-Many
TCGA.AM.5820	15	24208909	41782683	5572	-0.7193	SMALL-LOSS	NONFOCAL	101	Too-Many
TCGA.AG.3591	15	24208909	102400036	25183	-0.7104	SMALL-LOSS	NONFOCAL	550	Too-Many
TCGA.A6.6138	15	24433947	102400036	25117	-0.5213	SMALL-LOSS	NONFOCAL	550	Too-Many
TCGA.D5.6538	15	24529895	30278807	1762	-0.6853	SMALL-LOSS	NONFOCAL	15	"APBA2,ATP10A,FAM189A1,GABRA5,GABRB3,GABRG3,GOLGA8M,HERC2,NDNL2,NPAP1,OCA2,SNRPN,SNURF,TJP1,UBE3A"
TCGA.AA.3560	15	24669744	71826790	15030	-0.7358	SMALL-LOSS	NONFOCAL	333	Too-Many
TCGA.DM.A1D4	15	24669744	83962306	17971	-0.7856	SMALL-LOSS	NONFOCAL	459	Too-Many
TCGA.AA.3693	15	24788340	32509891	2241	-0.7541	SMALL-LOSS	NONFOCAL	27	"APBA2,ARHGAP11B,ATP10A,CHRFAM7A,CHRNA7,FAM189A1,FAN1,GABRA5,GABRB3,GABRG3,GOLGA8H,GOLGA8J,GOLGA8M,GOLGA8R,HERC2,KLF13,LOC283710,MTMR10,NDNL2,NPAP1,OCA2,OTUD7A,SNRPN,SNURF,TJP1,TRPM1,UBE3A"
TCGA.EI.6882	15	24801721	45568861	6134	-0.6696	SMALL-LOSS	NONFOCAL	166	Too-Many
TCGA.AG.3732	15	27381139	66250524	12150	-0.5741	SMALL-LOSS	NONFOCAL	292	Too-Many
TCGA.AA.3851	15	27685054	46480324	5330	-1.1422	SMALL-LOSS	NONFOCAL	165	Too-Many
TCGA.AG.3906.01A	15	28499539	34113464	256	-0.6607	SMALL-LOSS	NONFOCAL	26	"APBA2,ARHGAP11A,ARHGAP11B,CHRFAM7A,CHRNA7,FAM189A1,FAN1,FMN1,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8M,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,HERC2,KLF13,LOC283710,MTMR10,NDNL2,OTUD7A,RYR3,SCG5,TJP1,TRPM1"
TCGA.AG.3612	15	29425239	88162781	17853	-1.0422	SMALL-LOSS	NONFOCAL	462	Too-Many
TCGA.A6.A56B	15	30366246	39567304	3102	-1.1052	SMALL-LOSS	NONFOCAL	45	"ACTC1,AQR,ARHGAP11A,ARHGAP11B,AVEN,C15orf41,C15orf53,C15orf54,CHRFAM7A,CHRM5,CHRNA7,DPH6,EMC4,EMC7,FAM98B,FAN1,FMN1,GJD2,GOLGA8A,GOLGA8B,GOLGA8H,GOLGA8J,GOLGA8K,GOLGA8N,GOLGA8O,GOLGA8R,GREM1,KATNBL1,KLF13,LOC283710,LPCAT4,MEIS2,MTMR10,NOP10,NUTM1,OTUD7A,PGBD4,RASGRP1,RYR3,SCG5,SLC12A6,SPRED1,TMCO5A,TRPM1,ZNF770"
TCGA.AY.A71X	15	31523738	44479708	4009	-0.7695	SMALL-LOSS	NONFOCAL	127	Too-Many
TCGA.A6.5656	15	32931903	63314762	10294	-0.7458	SMALL-LOSS	NONFOCAL	227	Too-Many
TCGA.AA.3693	15	32931903	102400036	22839	-0.6986	SMALL-LOSS	NONFOCAL	520	Too-Many
TCGA.A6.2671	15	33554335	86660651	16063	-0.6828	SMALL-LOSS	NONFOCAL	439	Too-Many
TCGA.D5.6538	15	33714028	35830080	787	-0.5932	SMALL-LOSS	NONFOCAL	18	"ACTC1,AQR,AVEN,CHRM5,DPH6,EMC4,EMC7,GJD2,GOLGA8A,GOLGA8B,KATNBL1,LPCAT4,NOP10,NUTM1,PGBD4,RYR3,SLC12A6,ZNF770"
TCGA.AG.3909.01A	15	34567482	37391575	104	-0.8644	SMALL-LOSS	NONFOCAL	13	"ACTC1,AQR,C15orf41,DPH6,GJD2,GOLGA8A,GOLGA8B,LPCAT4,MEIS2,NOP10,NUTM1,SLC12A6,ZNF770"
TCGA.4N.A93T	15	34779924	102400036	21955	-0.8382	SMALL-LOSS	NONFOCAL	504	Too-Many
TCGA.A6.6780	15	34800594	61286591	8442	-0.6205	SMALL-LOSS	NONFOCAL	207	Too-Many
TCGA.DM.A28M.01A	15	35046558	56394312	2174	-0.5527	SMALL-LOSS	NONFOCAL	180	Too-Many
TCGA.G4.6322	15	37547040	58568092	6347	-0.8457	SMALL-LOSS	NONFOCAL	183	Too-Many
TCGA.AZ.4684.01A	15	38818453	40865677	184	-0.5149	SMALL-LOSS	NONFOCAL	24	"ANKRD63,BAHD1,BMF,BUB1B,C15orf52,C15orf53,C15orf54,C15orf56,C15orf57,CHST14,DISP2,EIF2AK4,FSIP1,GPR176,INAFM2,IVD,KNSTRN,PAK6,PHGR1,PLCB2,RASGRP1,RPUSD2,SRP14,THBS1"
TCGA.AG.3584	15	40476841	102400036	19835	-0.7116	SMALL-LOSS	NONFOCAL	484	Too-Many
TCGA.CK.5914.01A	15	40557996	41029294	114	-0.5934	SMALL-LOSS	NONFOCAL	16	"ANKRD63,BAHD1,C15orf52,C15orf57,CASC5,CHST14,DISP2,INAFM2,IVD,KNSTRN,PAK6,PHGR1,PLCB2,RAD51,RMDN3,RPUSD2"
TCGA.RU.A8FL	15	40683779	102400036	19768	-0.5476	SMALL-LOSS	NONFOCAL	475	Too-Many
TCGA.AA.3680	15	40929813	47999540	1606	-0.6908	SMALL-LOSS	NONFOCAL	92	"ADAL,B2M,BLOC1S6,C15orf43,C15orf48,C15orf62,CAPN3,CASC4,CASC5,CATSPER2,CCNDBP1,CDAN1,CHAC1,CHP1,CKMT1A,CKMT1B,CTDSPL2,DLL4,DNAJC17,DUOX1,DUOX2,DUOXA1,DUOXA2,EHD4,EIF3J,ELL3,EPB42,EXD1,FRMD5,GANC,GATM,GCHFR,HAUS2,HYPK,INO80,ITPKA,JMJD7,JMJD7-PLA2G4B,LCMT2,LRRC57,LTK,MAP1A,MAPKBP1,MFAP1,MGA,NDUFAF1,NUSAP1,OIP5,PATL2,PDIA3,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PPIP5K1,PPP1R14D,RAD51,RHOV,RMDN3,RPAP1,RTF1,SEMA6D,SERF2,SERINC4,SHF,SLC28A2,SLC30A4,SNAP23,SORD,SPATA5L1,SPG11,SPINT1,SPTBN5,SQRDL,STARD9,STRC,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TRIM69,TTBK2,TUBGCP4,TYRO3,UBR1,VPS18,VPS39,WDR76,ZFYVE19,ZNF106,ZSCAN29"
TCGA.AZ.4684.01A	15	41021713	41341448	84	-0.5242	SMALL-LOSS	NONFOCAL	13	"C15orf62,CHAC1,DLL4,DNAJC17,GCHFR,INO80,PPP1R14D,RAD51,RHOV,RMDN3,SPINT1,VPS18,ZFYVE19"
TCGA.DC.4745	15	41589006	42138455	76	-0.5817	SMALL-LOSS	NONFOCAL	13	"ITPKA,JMJD7,JMJD7-PLA2G4B,LTK,MAPKBP1,MGA,NDUFAF1,NUSAP1,OIP5,PLA2G4B,RPAP1,RTF1,TYRO3"
TCGA.AZ.4684.01A	15	41786094	45983102	941	-0.556	SMALL-LOSS	NONFOCAL	71	"ADAL,B2M,BLOC1S6,C15orf43,C15orf48,CAPN3,CASC4,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EHD4,EIF3J,ELL3,EPB42,FRMD5,GANC,GATM,HAUS2,HYPK,ITPKA,JMJD7,JMJD7-PLA2G4B,LCMT2,LRRC57,LTK,MAP1A,MAPKBP1,MFAP1,MGA,PATL2,PDIA3,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PPIP5K1,RPAP1,SERF2,SERINC4,SHF,SLC28A2,SLC30A4,SNAP23,SORD,SPATA5L1,SPG11,SPTBN5,SQRDL,STARD9,STRC,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TRIM69,TTBK2,TUBGCP4,TYRO3,UBR1,VPS39,WDR76,ZNF106,ZSCAN29"
TCGA.A6.A56B	15	41820199	42971187	289	-1.2621	SMALL-LOSS	NONFOCAL	21	"CAPN3,EHD4,GANC,HAUS2,JMJD7,JMJD7-PLA2G4B,LRRC57,MAPKBP1,MGA,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,RPAP1,SNAP23,SPTBN5,STARD9,TMEM87A,TYRO3,VPS39,ZNF106"
TCGA.AG.3906.01A	15	41961066	45440422	739	-0.56	SMALL-LOSS	NONFOCAL	59	"ADAL,B2M,C15orf43,CAPN3,CASC4,CATSPER2,CCNDBP1,CDAN1,CKMT1A,CKMT1B,CTDSPL2,DUOX1,DUOX2,DUOXA1,DUOXA2,EHD4,EIF3J,ELL3,EPB42,FRMD5,GANC,HAUS2,HYPK,JMJD7,JMJD7-PLA2G4B,LCMT2,LRRC57,MAP1A,MAPKBP1,MFAP1,MGA,PATL2,PDIA3,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PPIP5K1,SERF2,SERINC4,SNAP23,SORD,SPG11,SPTBN5,STARD9,STRC,TGM5,TGM7,TMEM62,TMEM87A,TP53BP1,TRIM69,TTBK2,TUBGCP4,UBR1,VPS39,WDR76,ZNF106,ZSCAN29"
TCGA.AA.3967.01A	15	41961066	60797666	1825	-0.5784	SMALL-LOSS	NONFOCAL	148	Too-Many
TCGA.AG.3727	15	42572795	60293713	5457	-0.7797	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.AA.3532	15	44862929	56767622	3766	-0.575	SMALL-LOSS	NONFOCAL	75	"AP4E1,ARPP19,ATP8B4,B2M,BCL2L10,BLOC1S6,C15orf43,C15orf48,C15orf65,CCPG1,CEP152,COPS2,CTXN2,CYP19A1,DMXL2,DTWD1,DUOX1,DUOX2,DUOXA1,DUOXA2,DUT,DYX1C1,EID1,FAM214A,FAM227B,FBN1,FGF7,GABPB1,GALK2,GATM,GLDN,GNB5,HDC,LEO1,LYSMD2,MAPK6,MNS1,MYEF2,MYO5A,MYO5C,NEDD4,ONECUT1,PATL2,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RFX7,RSL24D1,SCG3,SECISBP2L,SEMA6D,SHC4,SHF,SLC12A1,SLC24A5,SLC27A2,SLC28A2,SLC30A4,SORD,SPATA5L1,SPG11,SPPL2A,SQRDL,TEX9,TMOD2,TMOD3,TNFAIP8L3,TRIM69,TRPM7,UNC13C,USP50,USP8,WDR72"
TCGA.D5.6932	15	45123443	102400036	18985	-0.6187	SMALL-LOSS	NONFOCAL	392	Too-Many
TCGA.AA.A010.01A	15	45409675	48451773	133	-0.5203	SMALL-LOSS	NONFOCAL	14	"BLOC1S6,C15orf48,DUOX1,DUOXA1,DUOXA2,GATM,MYEF2,SEMA6D,SHF,SLC24A5,SLC28A2,SLC30A4,SPATA5L1,SQRDL"
TCGA.AG.3906.01A	15	45490998	49935522	281	-0.6148	SMALL-LOSS	NONFOCAL	24	"BLOC1S6,C15orf48,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,GATM,MYEF2,SECISBP2L,SEMA6D,SHC4,SHF,SLC12A1,SLC24A5,SLC28A2,SLC30A4,SPATA5L1,SQRDL"
TCGA.AA.3982	15	46244826	50414884	1339	-0.6222	SMALL-LOSS	NONFOCAL	17	"ATP8B4,CEP152,COPS2,CTXN2,DTWD1,DUT,EID1,FAM227B,FBN1,FGF7,GALK2,MYEF2,SECISBP2L,SEMA6D,SHC4,SLC12A1,SLC24A5"
TCGA.AZ.4684.01A	15	50489650	51757708	151	-0.5857	SMALL-LOSS	NONFOCAL	12	"AP4E1,CYP19A1,DMXL2,GABPB1,GLDN,HDC,SLC27A2,SPPL2A,TNFAIP8L3,TRPM7,USP50,USP8"
TCGA.DY.A0XA	15	53705333	60917274	2642	-0.6756	SMALL-LOSS	NONFOCAL	39	"ADAM10,ALDH1A2,ANXA2,AQP9,BNIP2,C15orf65,CCNB2,CCPG1,CGNL1,DYX1C1,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,ICE2,LDHAL6B,LIPC,MNS1,MYO1E,MYZAP,NEDD4,PIGB,PIGBOS1,POLR2M,PRTG,PYGO1,RAB27A,RFX7,RNF111,RORA,RSL24D1,SLTM,TCF12,TEX9,UNC13C,WDR72,ZNF280D"
TCGA.DM.A1D6	15	54248929	68740878	5081	-0.8142	SMALL-LOSS	NONFOCAL	103	Too-Many
TCGA.AZ.4684.01A	15	55483110	56394312	92	-0.536	SMALL-LOSS	NONFOCAL	11	"C15orf65,CCPG1,DYX1C1,NEDD4,PIGB,PIGBOS1,PRTG,PYGO1,RAB27A,RFX7,RSL24D1"
TCGA.D5.6538	15	55924608	62134331	2527	-0.5819	SMALL-LOSS	NONFOCAL	29	"ADAM10,ALDH1A2,ANXA2,AQP9,BNIP2,CCNB2,CGNL1,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,ICE2,LDHAL6B,LIPC,MNS1,MYO1E,MYZAP,NEDD4,POLR2M,PRTG,RFX7,RNF111,RORA,SLTM,TCF12,TEX9,ZNF280D"
TCGA.AA.A01Z	15	56426500	63659100	3001	-0.8242	SMALL-LOSS	NONFOCAL	37	"ADAM10,ALDH1A2,ANXA2,APH1B,AQP9,BNIP2,C2CD4A,C2CD4B,CA12,CCNB2,CGNL1,FAM63B,FAM81A,FOXB1,GCNT3,GCOM1,GTF2A2,ICE2,LACTB,LDHAL6B,LIPC,MNS1,MYO1E,MYZAP,POLR2M,RAB8B,RFX7,RNF111,RORA,RPS27L,SLTM,TCF12,TEX9,TLN2,TPM1,VPS13C,ZNF280D"
TCGA.EI.6881	15	61692717	102400036	13218	-0.5693	SMALL-LOSS	NONFOCAL	297	Too-Many
TCGA.AA.3967.01A	15	62243996	63930571	172	-0.6517	SMALL-LOSS	NONFOCAL	13	"APH1B,C2CD4A,C2CD4B,CA12,FBXL22,HERC1,LACTB,RAB8B,RPS27L,TLN2,TPM1,USP3,VPS13C"
TCGA.DM.A28M.01A	15	62333448	89790820	2284	-0.546	SMALL-LOSS	NONFOCAL	233	Too-Many
TCGA.A6.2675	15	62354569	64792531	839	-0.7455	SMALL-LOSS	NONFOCAL	21	"APH1B,C2CD4A,C2CD4B,CA12,CSNK1G1,DAPK2,FAM96A,FBXL22,HERC1,KIAA0101,LACTB,PPIB,RAB8B,RPS27L,SNX1,SNX22,TLN2,TPM1,TRIP4,USP3,ZNF609"
TCGA.AA.3697	15	64017322	65440091	264	-1.0673	SMALL-LOSS	NONFOCAL	22	"ANKDD1A,CSNK1G1,DAPK2,FAM96A,HERC1,KBTBD13,KIAA0101,MTFMT,OAZ2,PDCD7,PIF1,PLEKHO2,PPIB,RASL12,RBPMS2,SLC51B,SNX1,SNX22,SPG21,TRIP4,UBAP1L,ZNF609"
TCGA.AA.3967.01A	15	64218091	102462347	2634	-0.5737	SMALL-LOSS	NONFOCAL	285	Too-Many
TCGA.AA.A01Z	15	65955171	67486589	575	-0.8305	SMALL-LOSS	NONFOCAL	12	"DENND4A,DIS3L,LCTL,MAP2K1,MEGF11,RAB11A,RPL4,SMAD3,SMAD6,SNAPC5,TIPIN,ZWILCH"
TCGA.D5.6538	15	66794036	83366295	4498	-0.6405	SMALL-LOSS	NONFOCAL	147	Too-Many
TCGA.AG.3881	15	67321385	77533724	2508	-0.8327	SMALL-LOSS	NONFOCAL	97	"AAGAB,ADPGK,ANP32A,ARID3B,ARIH1,BBS4,C15orf27,C15orf39,C15orf59,C15orf61,CALML4,CCDC33,CD276,CELF6,CLK3,CLN6,COMMD4,CORO2B,COX5A,CPLX3,CSK,CSPG4,CT62,CYP11A1,CYP1A1,CYP1A2,EDC3,ETFA,FAM219B,FBXO22,FEM1B,GLCE,GOLGA6A,GOLGA6B,GOLGA6C,GOLGA6D,GRAMD2,HCN4,HEXA,IMP3,IQCH,ISL2,ISLR,ISLR2,ITGA11,KIF23,LARP6,LMAN1L,LOXL1,LRRC49,MAN2C1,MAP2K5,MPI,MYO9A,NEIL1,NEO1,NOX5,NPTN,NR2E3,NRG4,ODF3L1,PAQR5,PARP6,PEAK1,PIAS1,PKM,PML,PPCDC,PSTPIP1,PTPN9,RCN2,REC114,RPLP1,RPP25,SCAMP2,SCAMP5,SCAPER,SEMA7A,SENP8,SIN3A,SKOR1,SMAD3,SNUPN,SNX33,SPESP1,STOML1,STRA6,TBC1D21,THAP10,THSD4,TLE3,TMEM202,TSPAN3,UACA,UBE2Q2,UBL7,ULK3"
TCGA.CM.6165.01A	15	67524097	102462347	2386	-0.6199	SMALL-LOSS	NONFOCAL	243	Too-Many
TCGA.DM.A1D6	15	68757514	84408633	4033	-0.8676	SMALL-LOSS	NONFOCAL	143	Too-Many
TCGA.AA.3560	15	72084692	84918287	2996	-0.781	SMALL-LOSS	NONFOCAL	130	Too-Many
TCGA.G4.6322	15	73682707	76276428	433	-0.9442	SMALL-LOSS	NONFOCAL	48	"ARID3B,C15orf39,C15orf59,CCDC33,CD276,CLK3,COMMD4,COX5A,CPLX3,CSK,CSPG4,CYP11A1,CYP1A1,CYP1A2,EDC3,FAM219B,FBXO22,GOLGA6A,GOLGA6C,GOLGA6D,IMP3,ISLR,ISLR2,LMAN1L,LOXL1,MAN2C1,MPI,NEIL1,NPTN,NRG4,ODF3L1,PML,PPCDC,PTPN9,REC114,RPP25,SCAMP2,SCAMP5,SEMA7A,SIN3A,SNUPN,SNX33,STOML1,STRA6,TBC1D21,UBE2Q2,UBL7,ULK3"
TCGA.AG.3909.01A	15	74659619	75182826	89	-0.5792	SMALL-LOSS	NONFOCAL	14	"ARID3B,CLK3,CPLX3,CSK,CYP11A1,CYP1A1,CYP1A2,EDC3,LMAN1L,MPI,SCAMP2,SEMA7A,UBL7,ULK3"
TCGA.F4.6461	15	74667508	75712480	115	-0.7099	SMALL-LOSS	NONFOCAL	25	"ARID3B,C15orf39,CLK3,COMMD4,COX5A,CPLX3,CSK,CYP1A1,CYP1A2,EDC3,FAM219B,GOLGA6C,GOLGA6D,LMAN1L,MAN2C1,MPI,NEIL1,PPCDC,RPP25,SCAMP2,SCAMP5,SEMA7A,SIN3A,UBL7,ULK3"
TCGA.CK.5914.01A	15	75012793	75248284	68	-0.5343	SMALL-LOSS	NONFOCAL	11	"COX5A,CPLX3,CSK,CYP1A1,CYP1A2,FAM219B,LMAN1L,MPI,RPP25,SCAMP2,ULK3"
TCGA.AG.3909.01A	15	75304098	77287842	183	-0.686	SMALL-LOSS	NONFOCAL	24	"C15orf27,C15orf39,COMMD4,CSPG4,ETFA,FBXO22,GOLGA6C,GOLGA6D,IMP3,ISL2,MAN2C1,NEIL1,NRG4,ODF3L1,PPCDC,PSTPIP1,PTPN9,RCN2,SCAMP5,SCAPER,SIN3A,SNUPN,SNX33,UBE2Q2"
TCGA.AA.A01Z	15	75312751	78656541	613	-0.8386	SMALL-LOSS	NONFOCAL	36	"ACSBG1,C15orf27,C15orf39,CIB2,COMMD4,CRABP1,CSPG4,DNAJA4,ETFA,FBXO22,GOLGA6C,GOLGA6D,HMG20A,IDH3A,IMP3,ISL2,LINGO1,MAN2C1,NEIL1,NRG4,ODF3L1,PEAK1,PPCDC,PSTPIP1,PTPN9,RCN2,SCAMP5,SCAPER,SH2D7,SIN3A,SNUPN,SNX33,TBC1D2B,TSPAN3,UBE2Q2,WDR61"
TCGA.AG.3906.01A	15	75816517	78466698	167	-0.5458	SMALL-LOSS	NONFOCAL	24	"ACSBG1,C15orf27,CIB2,CSPG4,ETFA,FBXO22,HMG20A,IDH3A,IMP3,ISL2,LINGO1,NRG4,ODF3L1,PEAK1,PSTPIP1,PTPN9,RCN2,SCAPER,SH2D7,SNUPN,SNX33,TBC1D2B,TSPAN3,UBE2Q2"
TCGA.AG.3906.01A	15	79170492	82574438	209	-0.5847	SMALL-LOSS	NONFOCAL	24	"ABHD17C,ANKRD34C,ARNT2,BCL2A1,C15orf26,CEMIP,CTSH,EFTUD1,FAH,IL16,KIAA1024,MESDC1,MESDC2,MEX3B,MORF4L1,MTHFS,RASGRF1,SAXO2,ST20,ST20-MTHFS,STARD5,TMC3,TMED3,ZFAND6"
TCGA.AG.3906.01A	15	83224572	85259194	143	-0.5358	SMALL-LOSS	NONFOCAL	19	"ADAMTSL3,AP3B2,BNC1,BTBD1,C15orf40,CPEB1,FAM103A1,FSD2,GOLGA6L4,HDGFRP3,HOMER2,NMB,SEC11A,SH3GL3,TM6SF1,UBE2Q2L,WDR73,WHAMM,ZSCAN2"
TCGA.CK.5913	15	88499432	102400036	5539	-0.6564	SMALL-LOSS	NONFOCAL	76	"ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AZ.4681	15	89106413	102400036	5320	-0.5201	SMALL-LOSS	NONFOCAL	72	"ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,NGRN,NR2F2,OR4F15,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.DM.A28M.01A	15	89848336	102462347	688	-0.544	SMALL-LOSS	NONFOCAL	66	"ADAMTS17,ALDH1A3,ANPEP,AP3S2,ARPIN,ARRDC4,ASB7,BLM,C15orf32,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HDDC3,IDH2,IGF1R,IQGAP1,KIF7,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,NGRN,NR2F2,OR4F15,OR4F4,OR4F6,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TARSL2,TICRR,TM2D3,TTC23,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774"
TCGA.AG.3909.01A	15	90281233	90933967	72	-0.9917	SMALL-LOSS	NONFOCAL	15	"ANPEP,AP3S2,ARPIN,C15orf38-AP3S2,CIB1,GDPGP1,IDH2,IQGAP1,MESP1,MESP2,NGRN,SEMA4B,WDR93,ZNF710,ZNF774"
TCGA.CK.5914.01A	15	90328529	90933967	70	-0.6129	SMALL-LOSS	NONFOCAL	12	"ANPEP,AP3S2,ARPIN,C15orf38-AP3S2,CIB1,GDPGP1,IDH2,IQGAP1,NGRN,SEMA4B,ZNF710,ZNF774"
TCGA.AG.A02X.01A	15	91503083	99653759	175	-0.9593	SMALL-LOSS	NONFOCAL	18	"ARRDC4,C15orf32,CHD2,FAM169B,FAM174B,IGF1R,MCTP2,NR2F2,PGPEP1L,PRC1,RCCD1,RGMA,SLCO3A1,SPATA8,ST8SIA2,SV2B,SYNM,VPS33B"
TCGA.AA.3973	15	94365843	102400036	3194	-0.9405	SMALL-LOSS	NONFOCAL	26	"ADAMTS17,ALDH1A3,ARRDC4,ASB7,CERS3,CHSY1,FAM169B,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MCTP2,MEF2A,NR2F2,OR4F15,OR4F6,PCSK6,PGPEP1L,SNRPA1,SPATA8,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AA.A01Z	15	99203444	102196185	1265	-0.8415	SMALL-LOSS	NONFOCAL	19	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,IGF1R,LINS,LRRC28,LRRK1,LYSMD4,MEF2A,PCSK6,PGPEP1L,SNRPA1,SYNM,TARSL2,TM2D3,TTC23,VIMP"
TCGA.AG.A01Y	15	100246617	102400036	929	-0.9356	SMALL-LOSS	NONFOCAL	16	"ADAMTS17,ALDH1A3,ASB7,CERS3,CHSY1,LINS,LRRK1,LYSMD4,MEF2A,OR4F15,OR4F6,PCSK6,SNRPA1,TARSL2,TM2D3,VIMP"
TCGA.A6.3808.01A	16	64374	396101	100	-0.9591	SMALL-LOSS	NONFOCAL	16	"ARHGDIG,AXIN1,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,NPRL3,PDIA2,POLR3K,RGS11,RHBDF1,SNRNP25"
TCGA.AA.3930.01A	16	72880	601275	118	-0.5669	SMALL-LOSS	NONFOCAL	22	"ARHGDIG,AXIN1,CAPN15,DECR2,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,MRPL28,NME4,NPRL3,PDIA2,POLR3K,RAB11FIP3,RGS11,RHBDF1,SNRNP25,TMEM8A"
TCGA.AA.A01Z	16	91009	407799	70	-0.89	SMALL-LOSS	NONFOCAL	16	"ARHGDIG,AXIN1,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,NPRL3,PDIA2,POLR3K,RGS11,RHBDF1,SNRNP25"
TCGA.D5.5540	16	91009	552620	93	-0.9289	SMALL-LOSS	NONFOCAL	21	"ARHGDIG,AXIN1,DECR2,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,LUC7L,MPG,MRPL28,NME4,NPRL3,PDIA2,POLR3K,RAB11FIP3,RGS11,RHBDF1,SNRNP25,TMEM8A"
TCGA.AA.3979	16	91009	1415330	191	-1.1038	SMALL-LOSS	NONFOCAL	60	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C1QTNF8,CACNA1H,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,ITFG3,JMJD8,LMF1,LUC7L,METRN,MPG,MRPL28,MSLN,NARFL,NHLRC4,NME4,NPRL3,PDIA2,PIGQ,POLR3K,PRR25,PRR35,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RPUSD1,SNRNP25,SOX8,SSTR5,STUB1,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.DM.A1D6	16	91009	5861005	1450	-0.8072	SMALL-LOSS	NONFOCAL	188	Too-Many
TCGA.AA.3860	16	91009	6082138	1611	-0.646	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.CM.6172	16	91009	6315930	1800	-0.7306	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.DM.A1DB	16	91009	6344504	1817	-0.7753	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.EI.6883	16	94807	2460675	372	-0.6425	SMALL-LOSS	NONFOCAL	106	Too-Many
TCGA.A6.5661	16	94807	5380159	1082	-1.1294	SMALL-LOSS	NONFOCAL	188	Too-Many
TCGA.A6.2672	16	94807	6903126	2296	-0.7286	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.AA.A01K.01A	16	97383	2126443	172	-0.5448	SMALL-LOSS	NONFOCAL	94	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,CRAMP1L,DECR2,EME2,FAHD1,FAM173A,FAM195A,FBXL16,GFER,GNG13,GNPTG,HAGH,HAGHL,HBA1,HBA2,HBM,HBQ1,HBZ,HN1L,HS3ST6,IFT140,IGFALS,ITFG3,JMJD8,LMF1,LUC7L,MAPK8IP3,MEIOB,METRN,MPG,MRPL28,MRPS34,MSLN,MSRB1,NARFL,NDUFB10,NHLRC4,NME3,NME4,NOXO1,NPRL3,NPW,NTHL1,NUBP2,PDIA2,PIGQ,POLR3K,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDF1,RHBDL1,RHOT2,RNF151,RPL3L,RPS2,RPUSD1,SLC9A3R2,SNRNP25,SOX8,SPSB3,SSTR5,STUB1,SYNGR3,TBL3,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSC2,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1,ZNF598"
TCGA.AG.A02G.01A	16	97383	14041424	958	-0.9979	SMALL-LOSS	NONFOCAL	223	Too-Many
TCGA.AA.3861.01A	16	215943	1637167	229	-0.823	SMALL-LOSS	NONFOCAL	61	"ARHGDIG,AXIN1,BAIAP3,C16orf13,C16orf91,C1QTNF8,CACNA1H,CAPN15,CCDC154,CCDC78,CHTF18,CLCN7,DECR2,FAM173A,FAM195A,FBXL16,GNG13,GNPTG,HAGHL,HBA1,HBA2,HBM,HBQ1,IFT140,ITFG3,JMJD8,LMF1,LUC7L,METRN,MRPL28,MSLN,NARFL,NHLRC4,NME4,PDIA2,PIGQ,PRR25,PRR35,PTX4,RAB11FIP3,RAB40C,RGS11,RHBDL1,RHOT2,RPUSD1,SOX8,SSTR5,STUB1,TELO2,TMEM204,TMEM8A,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,UNKL,WDR24,WDR90,WFIKKN1"
TCGA.F4.6459	16	367983	8064157	3184	-0.5963	SMALL-LOSS	NONFOCAL	174	Too-Many
TCGA.AG.4009.01A	16	396101	848933	90	-0.8175	SMALL-LOSS	NONFOCAL	30	"AXIN1,C16orf13,CAPN15,CCDC78,CHTF18,DECR2,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,JMJD8,METRN,MRPL28,MSLN,NARFL,NHLRC4,NME4,PIGQ,PRR35,RAB11FIP3,RAB40C,RHBDL1,RHOT2,RPUSD1,STUB1,TMEM8A,WDR24,WDR90,WFIKKN1"
TCGA.AA.3930.01A	16	613268	1400761	144	-0.8646	SMALL-LOSS	NONFOCAL	36	"BAIAP3,C16orf13,C1QTNF8,CACNA1H,CCDC78,CHTF18,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,JMJD8,LMF1,METRN,MSLN,NARFL,NHLRC4,PIGQ,PRR25,PRR35,RAB40C,RHBDL1,RHOT2,RPUSD1,SOX8,SSTR5,STUB1,TPSAB1,TPSB2,TPSD1,TPSG1,TSR3,UBE2I,WDR24,WDR90,WFIKKN1"
TCGA.A6.3808.01A	16	1401647	1812300	136	-0.6049	SMALL-LOSS	NONFOCAL	13	"C16orf91,CCDC154,CLCN7,CRAMP1L,GNPTG,HN1L,IFT140,MAPK8IP3,PTX4,TELO2,TMEM204,TSR3,UNKL"
TCGA.AA.A029.01A	16	1510370	3790353	310	-0.5819	SMALL-LOSS	NONFOCAL	96	"ABCA3,AMDHD2,ATP6V0C,BRICD5,C16orf59,C16orf90,CASKIN1,CCDC64B,CCNF,CEMP1,CLCN7,CLDN6,CLDN9,CLUAP1,CRAMP1L,CREBBP,DNASE1,DNASE1L2,E4F1,ECI1,EME2,FAHD1,FLYWCH1,FLYWCH2,GFER,HAGH,HCFC1R1,HN1L,HS3ST6,IFT140,IGFALS,IL32,KCTD5,KREMEN2,MAPK8IP3,MEFV,MEIOB,MLST8,MMP25,MRPS34,MSRB1,MTRNR2L4,NAA60,NDUFB10,NLRC3,NME3,NOXO1,NPW,NTHL1,NTN3,NUBP2,OR1F1,OR2C1,PAQR4,PDPK1,PGP,PKD1,PKMYT1,PRSS21,PRSS22,PRSS27,PRSS33,PRSS41,PTX4,RAB26,RNF151,RNPS1,RPL3L,RPS2,SLC9A3R2,SLX4,SPSB3,SRRM2,SYNGR3,TBC1D24,TBL3,TCEB2,TELO2,THOC6,TIGD7,TMEM204,TNFRSF12A,TRAF7,TRAP1,TSC2,ZG16B,ZNF174,ZNF200,ZNF205,ZNF213,ZNF263,ZNF597,ZNF598,ZNF75A,ZSCAN10,ZSCAN32"
TCGA.AG.4009.01A	16	1630709	2053570	101	-0.6067	SMALL-LOSS	NONFOCAL	24	"CRAMP1L,EME2,FAHD1,GFER,HAGH,HN1L,HS3ST6,IFT140,IGFALS,MAPK8IP3,MEIOB,MRPS34,MSRB1,NDUFB10,NME3,NOXO1,NUBP2,RNF151,RPL3L,RPS2,SPSB3,SYNGR3,TBL3,ZNF598"
TCGA.A6.5665	16	1850445	7113222	2163	-0.6139	SMALL-LOSS	NONFOCAL	113	Too-Many
TCGA.AA.A00N.01A	16	1961564	2342094	203	-0.5529	SMALL-LOSS	NONFOCAL	27	"ABCA3,BRICD5,CASKIN1,DNASE1L2,E4F1,ECI1,GFER,HS3ST6,MLST8,MSRB1,NDUFB10,NOXO1,NPW,NTHL1,PGP,PKD1,RAB26,RNF151,RNPS1,RPL3L,RPS2,SLC9A3R2,SYNGR3,TBL3,TRAF7,TSC2,ZNF598"
TCGA.AA.A00N.01A	16	2481093	2806319	59	-0.7261	SMALL-LOSS	NONFOCAL	11	"AMDHD2,ATP6V0C,C16orf59,CCNF,CEMP1,KCTD5,NTN3,PDPK1,PRSS27,SRRM2,TBC1D24"
TCGA.AA.A01Q.01A	16	2485739	2826966	61	-0.6633	SMALL-LOSS	NONFOCAL	12	"AMDHD2,ATP6V0C,C16orf59,CCNF,CEMP1,KCTD5,NTN3,PDPK1,PRSS27,SRRM2,TBC1D24,TCEB2"
TCGA.AA.A00N.01A	16	2815110	3254225	99	-0.5533	SMALL-LOSS	NONFOCAL	23	"CCDC64B,CLDN6,CLDN9,FLYWCH1,FLYWCH2,HCFC1R1,IL32,KREMEN2,MMP25,PAQR4,PKMYT1,PRSS21,PRSS22,PRSS33,PRSS41,SRRM2,TCEB2,THOC6,TNFRSF12A,ZG16B,ZNF205,ZNF213,ZSCAN10"
TCGA.AA.A010.01A	16	2989975	3118953	41	-0.9769	SMALL-LOSS	NONFOCAL	12	"CCDC64B,CLDN6,CLDN9,FLYWCH1,HCFC1R1,IL32,KREMEN2,MMP25,PAQR4,PKMYT1,THOC6,TNFRSF12A"
TCGA.AG.4009.01A	16	3016089	3139100	25	-0.7934	SMALL-LOSS	NONFOCAL	12	"CCDC64B,CLDN6,CLDN9,HCFC1R1,IL32,KREMEN2,MMP25,PAQR4,PKMYT1,THOC6,TNFRSF12A,ZSCAN10"
TCGA.AG.3612	16	3214685	4391732	327	-1.2947	SMALL-LOSS	NONFOCAL	25	"ADCY9,C16orf90,CLUAP1,CORO7-PAM16,CREBBP,DNASE1,GLIS2,MEFV,MTRNR2L4,NAA60,NLRC3,OR1F1,OR2C1,PAM16,SLX4,SRL,TFAP4,TIGD7,TRAP1,ZNF174,ZNF200,ZNF263,ZNF597,ZNF75A,ZSCAN32"
TCGA.AM.5820	16	3214685	17411634	6476	-0.6951	SMALL-LOSS	NONFOCAL	108	Too-Many
TCGA.DM.A1D6	16	6652925	21839339	5905	-0.744	SMALL-LOSS	NONFOCAL	98	"ABAT,ABCC1,ABCC6,ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,ARL6IP1,ATF7IP2,BFAR,C16orf45,C16orf62,C16orf72,CARHSP1,CCP110,CIITA,CLEC16A,CLEC19A,COQ7,CPPED1,CRYM,DCUN1D3,DEXI,DNAH3,EMP2,ERCC4,ERI2,FOPNL,GDE1,GP2,GPR139,GPRC5B,GRIN2A,GSPT1,IGSF6,IQCK,ITPRIPL2,KIAA0430,KNOP1,LITAF,LOC81691,LYRM1,METTL22,METTL9,MKL2,MPV17L,MYH11,NDE1,NOMO1,NOMO2,NOMO3,NPIPA1,NPIPA2,NPIPA3,NPIPA5,NPIPA7,NPIPA8,NPIPB3,NTAN1,NUBP1,OTOA,PARN,PDILT,PDXDC1,PLA2G10,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RPS15A,RRN3,RSL1D1,SHISA9,SMG1,SNN,SNX29,SOCS1,SYT17,TEKT5,THUMPD1,TMC5,TMC7,TMEM114,TMEM159,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,UMOD,USP7,XYLT1,ZC3H7A,ZP2"
TCGA.CM.6172	16	7138504	14709857	4006	-0.5466	SMALL-LOSS	NONFOCAL	37	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,GRIN2A,GSPT1,LITAF,METTL22,MKL2,NUBP1,PARN,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AA.3860	16	7196110	30177806	7645	-0.6475	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.AG.3726	16	7296883	14327296	3763	-0.6826	SMALL-LOSS	NONFOCAL	36	"ABAT,ATF7IP2,C16orf72,CARHSP1,CIITA,CLEC16A,CPPED1,DEXI,EMP2,ERCC4,GRIN2A,GSPT1,LITAF,METTL22,MKL2,NUBP1,PMM2,PRM1,PRM2,PRM3,RBFOX1,RMI2,RSL1D1,SHISA9,SNN,SNX29,SOCS1,TEKT5,TMEM114,TMEM186,TNFRSF17,TNP2,TVP23A,TXNDC11,USP7,ZC3H7A"
TCGA.AM.5820	16	18779447	25506581	1673	-0.7876	SMALL-LOSS	NONFOCAL	69	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,AQP8,ARHGAP17,ARL6IP1,C16orf52,C16orf62,CACNG3,CCP110,CDR2,CHP2,CLEC19A,COG7,COQ7,CRYM,DCTN5,DCUN1D3,DNAH3,EARS2,EEF2K,ERI2,ERN2,GDE1,GGA2,GP2,GPR139,GPRC5B,HS3ST2,IGSF6,IQCK,ITPRIPL2,KNOP1,LCMT1,LOC81691,LYRM1,METTL9,NDUFAB1,NPIPB3,NPIPB5,OTOA,PALB2,PDILT,PDZD9,PLK1,POLR3E,PRKCB,RBBP6,RPS15A,SCNN1B,SCNN1G,SLC5A11,SMG1,SYT17,THUMPD1,TMC5,TMC7,TMEM159,TNRC6A,UBFD1,UMOD,UQCRC2,USP31,VWA3A,ZKSCAN2,ZP2"
TCGA.AF.3913	16	19053116	21272364	662	-0.6799	SMALL-LOSS	NONFOCAL	31	"ACSM1,ACSM2A,ACSM2B,ACSM3,ACSM5,ANKS4B,C16orf62,CCP110,CLEC19A,COQ7,CRYM,DCUN1D3,DNAH3,ERI2,GDE1,GP2,GPR139,GPRC5B,IQCK,ITPRIPL2,KNOP1,LOC81691,LYRM1,PDILT,SYT17,THUMPD1,TMC5,TMC7,TMEM159,UMOD,ZP2"
TCGA.AA.A01Q.01A	16	21689785	25026459	291	-0.5434	SMALL-LOSS	NONFOCAL	29	"ARHGAP17,C16orf52,CACNG3,CDR2,CHP2,COG7,DCTN5,EARS2,EEF2K,ERN2,GGA2,HS3ST2,NDUFAB1,NPIPB5,OTOA,PALB2,PDZD9,PLK1,POLR3E,PRKCB,RBBP6,SCNN1B,SCNN1G,SLC5A11,TNRC6A,UBFD1,UQCRC2,USP31,VWA3A"
TCGA.AA.A01Q.01A	16	28592328	28994466	85	-0.9223	SMALL-LOSS	NONFOCAL	14	"ATP2A1,ATXN2L,CCDC101,CD19,EIF3C,EIF3CL,NFATC2IP,NPIPB9,RABEP2,SH2B1,SPNS1,SULT1A1,SULT1A2,TUFM"
TCGA.EI.6511	16	29358350	30177806	58	-0.5947	SMALL-LOSS	NONFOCAL	32	"ALDOA,ASPHD1,BOLA2,BOLA2B,C16orf54,C16orf92,CDIPT,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,KCTD13,KIF22,MAPK3,MAZ,MVP,PAGR1,PPP4C,PRRT2,QPRT,SEZ6L2,SLX1A,SLX1B,SPN,SULT1A3,SULT1A4,TAOK2,TBX6,TMEM219,YPEL3,ZG16"
TCGA.AA.A00N.01A	16	29870473	30495106	133	-0.6418	SMALL-LOSS	NONFOCAL	33	"ALDOA,ASPHD1,BOLA2,BOLA2B,C16orf92,CD2BP2,CDIPT,CORO1A,DCTPP1,DOC2A,FAM57B,GDPD3,HIRIP3,INO80E,ITGAL,KCTD13,MAPK3,MYLPF,PPP4C,SEPHS2,SEPT1,SEZ6L2,SLX1A,SLX1B,SULT1A3,SULT1A4,TAOK2,TBC1D10B,TBX6,TMEM219,YPEL3,ZNF48,ZNF771"
TCGA.AA.A01Q.01A	16	30078547	30409624	52	-0.5505	SMALL-LOSS	NONFOCAL	18	"ALDOA,BOLA2,BOLA2B,CD2BP2,CORO1A,GDPD3,MAPK3,MYLPF,PPP4C,SEPT1,SLX1A,SLX1B,SULT1A3,SULT1A4,TBC1D10B,TBX6,YPEL3,ZNF48"
TCGA.AG.4009.01A	16	30092526	30419326	50	-0.8975	SMALL-LOSS	NONFOCAL	18	"BOLA2,BOLA2B,CD2BP2,CORO1A,GDPD3,MAPK3,MYLPF,PPP4C,SEPT1,SLX1A,SLX1B,SULT1A3,SULT1A4,TBC1D10B,TBX6,YPEL3,ZNF48,ZNF771"
TCGA.AA.A00N.01A	16	30522185	30731432	57	-0.605	SMALL-LOSS	NONFOCAL	11	"FBRS,ITGAL,LOC730183,PRR14,SRCAP,ZNF688,ZNF689,ZNF747,ZNF764,ZNF768,ZNF785"
TCGA.AA.A00N.01A	16	30744584	31191442	127	-0.6863	SMALL-LOSS	NONFOCAL	23	"BCKDK,BCL7C,C16orf93,CTF1,FBXL19,FUS,HSD3B7,KAT8,ORAI3,PHKG2,PRSS36,PRSS53,PRSS8,RNF40,SETD1A,SRCAP,STX1B,STX4,TMEM265,VKORC1,ZNF629,ZNF646,ZNF668"
TCGA.AG.4009.01A	16	30992042	31234099	77	-0.6811	SMALL-LOSS	NONFOCAL	16	"BCKDK,FUS,HSD3B7,KAT8,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,SETD1A,STX1B,STX4,TRIM72,VKORC1,ZNF646,ZNF668"
TCGA.AA.A010.01A	16	31044271	31235490	71	-0.5465	SMALL-LOSS	NONFOCAL	13	"BCKDK,FUS,KAT8,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,STX4,TRIM72,VKORC1,ZNF646,ZNF668"
TCGA.AA.A00N.01A	16	31425721	46642154	63	-0.6974	SMALL-LOSS	NONFOCAL	15	"AHSP,ARMC5,C16orf58,COX6A2,ITGAD,SHCBP1,SLC5A2,TGFB1I1,TP53TG3,TP53TG3B,TP53TG3C,TP53TG3D,ZNF267,ZNF720,ZNF843"
TCGA.AG.3732	16	31938454	90163274	16717	-0.601	SMALL-LOSS	NONFOCAL	369	Too-Many
TCGA.AM.5820	16	34202672	65035278	5862	-0.6472	SMALL-LOSS	NONFOCAL	104	Too-Many
TCGA.CA.5254	16	46534976	53026144	1891	-0.5188	SMALL-LOSS	NONFOCAL	30	"ABCC11,ABCC12,ADCY7,BRD7,C16orf78,C16orf87,C16orf97,CBLN1,CNEP1R1,CYLD,DNAJA2,GPT2,HEATR3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,SALL1,SHCBP1,SIAH1,SNX20,TOX3,VPS35,ZNF423"
TCGA.AA.3966	16	46534976	90163274	16637	-0.5427	SMALL-LOSS	NONFOCAL	365	Too-Many
TCGA.AG.3726	16	54437428	90163274	14309	-0.699	SMALL-LOSS	NONFOCAL	328	Too-Many
TCGA.AA.A010.01A	16	67036924	67397441	129	-0.7537	SMALL-LOSS	NONFOCAL	19	"B3GNT9,C16orf70,CBFB,CES4A,E2F4,ELMO3,EXOC3L1,FBXL8,FHOD1,HSF4,KCTD19,KIAA0895L,LRRC29,LRRC36,NOL3,PLEKHG4,SLC9A5,TMEM208,TRADD"
TCGA.F4.6461	16	67676955	68287973	44	-0.6078	SMALL-LOSS	NONFOCAL	26	"ACD,C16orf86,CENPT,CTRL,DDX28,DPEP2,DPEP3,DUS2,EDC4,ENKD1,ESRP2,GFOD2,LCAT,LOC100131303,NFATC3,NRN1L,NUTF2,PARD6A,PLA2G15,PSKH1,PSMB10,RANBP10,RLTPR,SLC12A4,THAP11,TSNAXIP1"
TCGA.A6.3808.01A	16	67854710	68012158	71	-1.1457	SMALL-LOSS	NONFOCAL	12	"CENPT,CTRL,DPEP3,EDC4,LCAT,NRN1L,NUTF2,PSKH1,PSMB10,SLC12A4,THAP11,TSNAXIP1"
TCGA.A6.3808.01A	16	68952941	70566352	240	-0.5942	SMALL-LOSS	NONFOCAL	27	"AARS,CHTF8,CIRH1A,CLEC18A,CLEC18C,COG4,COG8,CYB5B,DDX19A,DDX19B,EXOSC6,FUK,HAS3,NFAT5,NIP7,NOB1,NQO1,PDF,PDPR,SF3B3,SNTB2,ST3GAL2,TANGO6,TERF2,TMED6,VPS4A,WWP2"
TCGA.AG.3605.01A	16	69419263	84778207	20	-0.6704	SMALL-LOSS	NONFOCAL	107	Too-Many
TCGA.AA.3860	16	70814786	90163274	9616	-0.6771	SMALL-LOSS	NONFOCAL	154	Too-Many
TCGA.EI.6883	16	71379382	90163274	9426	-0.6661	SMALL-LOSS	NONFOCAL	151	Too-Many
TCGA.AA.3549	16	77093915	90163274	7622	-0.7008	SMALL-LOSS	NONFOCAL	107	Too-Many
TCGA.A6.2678	16	78110143	89986116	6817	-0.694	SMALL-LOSS	NONFOCAL	95	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAF,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,USP10,VPS9D1,WFDC1,WWOX,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.DM.A288	16	80292352	90163274	5152	-0.8899	SMALL-LOSS	NONFOCAL	99	"ACSF3,ADAD2,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CDYL2,CENPBD1,CENPN,CHMP1A,CMC2,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,DYNLRB2,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GAS8,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PKD1L2,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.QL.A97D	16	81539644	90163274	4380	-0.6296	SMALL-LOSS	NONFOCAL	89	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CMIP,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MPHOSPH6,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PLCG2,PRDM7,RNF166,RPL13,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AZ.4614	16	82925097	90163274	3368	-0.8407	SMALL-LOSS	NONFOCAL	84	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSBP1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.A6.5665	16	83852199	90163274	2582	-0.6529	SMALL-LOSS	NONFOCAL	82	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.A6.2672	16	83935154	90163274	2527	-0.7127	SMALL-LOSS	NONFOCAL	82	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.A6.5661	16	83935154	90163274	2526	-0.7346	SMALL-LOSS	NONFOCAL	82	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MLYCD,MTHFSD,MVD,NECAB2,OSGIN1,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC38A8,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A02E.01A	16	84120911	90142216	372	-0.6264	SMALL-LOSS	NONFOCAL	78	"ACSF3,ADAD2,ANKRD11,APRT,ATP2C2,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COTL1,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DNAAF1,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,LOC100129697,LOC100287036,MAP1LC3B,MBTPS1,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TAF1C,TCF25,TLDC1,TRAPPC2L,TUBB3,USP10,VPS9D1,WFDC1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A01D.01A	16	84801782	90142216	253	-0.5183	SMALL-LOSS	NONFOCAL	67	"ACSF3,ANKRD11,APRT,BANP,C16orf74,C16orf95,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,COX4I1,CPNE7,CRISPLD2,CTU2,CYBA,DBNDD1,DEF8,DPEP1,EMC8,FAM92B,FANCA,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAS8,GINS2,GSE1,IL17C,IRF8,JPH3,KIAA0513,KLHDC4,LOC100129697,LOC100287036,MAP1LC3B,MC1R,MTHFSD,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,USP10,VPS9D1,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A010.01A	16	85696575	87960306	106	-0.5625	SMALL-LOSS	NONFOCAL	18	"C16orf74,C16orf95,CA5A,COX4I1,EMC8,FBXO31,FOXC2,FOXF1,FOXL1,GINS2,GSE1,IRF8,JPH3,KLHDC4,MAP1LC3B,MTHFSD,SLC7A5,ZCCHC14"
TCGA.AA.A01Q.01A	16	85715151	87885293	77	-0.7551	SMALL-LOSS	NONFOCAL	16	"C16orf74,C16orf95,COX4I1,EMC8,FBXO31,FOXC2,FOXF1,FOXL1,GINS2,IRF8,JPH3,KLHDC4,MAP1LC3B,MTHFSD,SLC7A5,ZCCHC14"
TCGA.CM.5349	16	86003057	88190297	1199	-0.5589	SMALL-LOSS	NONFOCAL	13	"BANP,C16orf95,CA5A,FBXO31,FOXC2,FOXF1,FOXL1,JPH3,KLHDC4,MAP1LC3B,MTHFSD,SLC7A5,ZCCHC14"
TCGA.A6.3808.01A	16	86582021	88778644	147	-0.9992	SMALL-LOSS	NONFOCAL	21	"BANP,C16orf95,CA5A,CTU2,CYBA,FBXO31,FOXC2,FOXL1,IL17C,JPH3,KLHDC4,MAP1LC3B,MTHFSD,MVD,RNF166,SLC7A5,SNAI3,ZC3H18,ZCCHC14,ZFPM1,ZNF469"
TCGA.AA.A00O.01A	16	87443827	90142216	192	-0.5237	SMALL-LOSS	NONFOCAL	49	"ACSF3,ANKRD11,APRT,BANP,CA5A,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,CYBA,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,IL17C,JPH3,KLHDC4,LOC100129697,LOC100287036,MC1R,MVD,PABPN1L,PIEZO1,PRDM7,RNF166,RPL13,SLC22A31,SLC7A5,SNAI3,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZC3H18,ZCCHC14,ZFPM1,ZNF276,ZNF469,ZNF778"
TCGA.AA.A00N.01A	16	87525243	89287449	206	-0.5505	SMALL-LOSS	NONFOCAL	27	"ACSF3,APRT,BANP,CA5A,CBFA2T3,CDH15,CDT1,CTU2,CYBA,GALNS,IL17C,JPH3,KLHDC4,LOC100129697,MVD,PABPN1L,PIEZO1,RNF166,SLC22A31,SLC7A5,SNAI3,TRAPPC2L,ZC3H18,ZCCHC14,ZFPM1,ZNF469,ZNF778"
TCGA.AA.3861.01A	16	88071502	89755596	148	-0.7747	SMALL-LOSS	NONFOCAL	31	"ACSF3,ANKRD11,APRT,BANP,CBFA2T3,CDH15,CDK10,CDT1,CHMP1A,CPNE7,CTU2,CYBA,DPEP1,GALNS,IL17C,LOC100129697,LOC100287036,MVD,PABPN1L,PIEZO1,RNF166,RPL13,SLC22A31,SNAI3,SPATA33,SPG7,TRAPPC2L,ZC3H18,ZFPM1,ZNF469,ZNF778"
TCGA.AA.3862.01A	16	88689580	89288464	81	-0.8419	SMALL-LOSS	NONFOCAL	19	"ACSF3,APRT,CBFA2T3,CDH15,CDT1,CTU2,CYBA,GALNS,IL17C,LOC100129697,MVD,PABPN1L,PIEZO1,RNF166,SLC22A31,SNAI3,TRAPPC2L,ZC3H18,ZNF778"
TCGA.AF.2692	16	88780517	90163274	249	-0.517	SMALL-LOSS	NONFOCAL	35	"ACSF3,ANKRD11,APRT,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,CTU2,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,LOC100129697,LOC100287036,MC1R,PABPN1L,PIEZO1,PRDM7,RPL13,SLC22A31,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZNF276,ZNF778"
TCGA.A6.3808.01A	16	88871801	90142216	281	-0.9645	SMALL-LOSS	NONFOCAL	33	"ACSF3,ANKRD11,APRT,CBFA2T3,CDH15,CDK10,CDT1,CENPBD1,CHMP1A,CPNE7,DBNDD1,DEF8,DPEP1,FANCA,GALNS,GAS8,LOC100129697,LOC100287036,MC1R,PABPN1L,PRDM7,RPL13,SLC22A31,SPATA2L,SPATA33,SPG7,SPIRE2,TCF25,TRAPPC2L,TUBB3,VPS9D1,ZNF276,ZNF778"
TCGA.AA.A00N.01A	16	89334849	89865386	123	-0.6684	SMALL-LOSS	NONFOCAL	13	"ANKRD11,CDK10,CHMP1A,CPNE7,DPEP1,FANCA,LOC100287036,RPL13,SPATA2L,SPATA33,SPG7,VPS9D1,ZNF276"
TCGA.AA.3861.01A	17	5960	1489155	141	-0.5777	SMALL-LOSS	NONFOCAL	21	"ABR,BHLHA9,C17orf97,CRK,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,PITPNA,RNMTL1,RPH3AL,SLC43A2,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.CK.5914.01A	17	5960	1968755	270	-0.9664	SMALL-LOSS	NONFOCAL	35	"ABR,BHLHA9,C17orf97,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SLC43A2,SMG6,SMYD4,TIMM22,TLCD2,TUSC5,VPS53,WDR81,YWHAE"
TCGA.DM.A282.01A	17	5960	18291450	2678	-0.6211	SMALL-LOSS	NONFOCAL	289	Too-Many
TCGA.CM.4750.01A	17	5960	20356285	2933	-0.5153	SMALL-LOSS	NONFOCAL	315	Too-Many
TCGA.DC.6160.01A	17	5960	21146011	2963	-0.5271	SMALL-LOSS	NONFOCAL	321	Too-Many
TCGA.CM.5862	17	6887	1235316	246	-1.1591	SMALL-LOSS	NONFOCAL	15	"ABR,BHLHA9,C17orf97,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,LOC100506388,NXN,RNMTL1,RPH3AL,TIMM22,TUSC5,VPS53"
TCGA.F4.6460	17	6887	1692139	343	-1.1075	SMALL-LOSS	NONFOCAL	29	"ABR,BHLHA9,C17orf97,CRK,DOC2B,FAM101B,FAM57A,GEMIN4,GLOD4,INPP5K,LOC100506388,MYO1C,NXN,PITPNA,PRPF8,RILP,RNMTL1,RPH3AL,SCARF1,SERPINF1,SERPINF2,SLC43A2,SMYD4,TIMM22,TLCD2,TUSC5,VPS53,WDR81,YWHAE"
TCGA.G4.6295	17	6887	3288544	699	-1.0838	SMALL-LOSS	NONFOCAL	50	"ABR,BHLHA9,C17orf97,CLUH,CRK,DOC2B,DPH1,FAM101B,FAM57A,GEMIN4,GLOD4,HIC1,INPP5K,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1G1,OR3A1,OR3A2,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.CK.5912	17	6887	3635767	826	-0.8939	SMALL-LOSS	NONFOCAL	64	"ABR,ASPA,BHLHA9,C17orf97,CLUH,CRK,CTNS,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,VPS53,WDR81,YWHAE"
TCGA.EI.7002	17	6887	4359628	1011	-0.5151	SMALL-LOSS	NONFOCAL	73	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AF.2693	17	6887	4475243	1048	-0.6188	SMALL-LOSS	NONFOCAL	76	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AG.3584	17	6887	4494072	1053	-0.7053	SMALL-LOSS	NONFOCAL	77	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AG.3726	17	6887	4494072	1052	-0.598	SMALL-LOSS	NONFOCAL	77	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.A6.5659	17	6887	4519138	986	-0.8568	SMALL-LOSS	NONFOCAL	77	"ABR,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.A6.2677	17	6887	4535384	991	-1.0521	SMALL-LOSS	NONFOCAL	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.D5.5541	17	6887	4535384	1058	-0.942	SMALL-LOSS	NONFOCAL	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AZ.6603	17	6887	4538499	1055	-0.7639	SMALL-LOSS	NONFOCAL	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.CM.6166	17	6887	4538499	1061	-0.7632	SMALL-LOSS	NONFOCAL	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.DY.A0XA	17	6887	4538499	1058	-0.7892	SMALL-LOSS	NONFOCAL	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.F5.6465	17	6887	4538499	1061	-0.6009	SMALL-LOSS	NONFOCAL	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.DT.5265	17	6887	4540646	1063	-0.6057	SMALL-LOSS	NONFOCAL	78	"ABR,ALOX15,ANKFY1,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,CYB5D2,DOC2B,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GGT6,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYBBP1A,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMTNL2,SMYD4,SPATA22,SPNS2,SPNS3,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,UBE2G1,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.D5.5540	17	6887	7932787	2032	-0.8136	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.A6.5661	17	6887	10334790	2925	-0.6967	SMALL-LOSS	NONFOCAL	224	Too-Many
TCGA.DM.A28H	17	6887	11554184	3408	-0.6459	SMALL-LOSS	NONFOCAL	234	Too-Many
TCGA.NH.A6GC	17	6887	12175526	3594	-0.5234	SMALL-LOSS	NONFOCAL	236	Too-Many
TCGA.AA.3667	17	6887	13802501	4300	-0.7901	SMALL-LOSS	NONFOCAL	240	Too-Many
TCGA.AG.3598	17	6887	14931233	4795	-1.0423	SMALL-LOSS	NONFOCAL	243	Too-Many
TCGA.DY.A1DG	17	6887	15510855	5035	-0.5514	SMALL-LOSS	NONFOCAL	249	Too-Many
TCGA.AG.3591	17	6887	15554277	5039	-0.7862	SMALL-LOSS	NONFOCAL	250	Too-Many
TCGA.AA.3692	17	6887	15592761	5048	-0.7237	SMALL-LOSS	NONFOCAL	250	Too-Many
TCGA.AA.3975	17	6887	16386844	5143	-0.77	SMALL-LOSS	NONFOCAL	261	Too-Many
TCGA.AA.3972	17	6887	16413608	5160	-0.7728	SMALL-LOSS	NONFOCAL	261	Too-Many
TCGA.AZ.6608	17	6887	16617185	5173	-0.6207	SMALL-LOSS	NONFOCAL	264	Too-Many
TCGA.DY.A1DD	17	6887	16617185	5196	-0.9033	SMALL-LOSS	NONFOCAL	264	Too-Many
TCGA.A6.6140	17	6887	16662913	5196	-0.7337	SMALL-LOSS	NONFOCAL	264	Too-Many
TCGA.CM.6679	17	6887	16662913	5175	-0.73115	SMALL-LOSS	NONFOCAL	264	Too-Many
TCGA.A6.5656	17	6887	16847112	5206	-0.8074	SMALL-LOSS	NONFOCAL	265	Too-Many
TCGA.NH.A8F8	17	6887	16866253	5239	-0.6337	SMALL-LOSS	NONFOCAL	265	Too-Many
TCGA.AA.3819	17	6887	17977925	5490	-0.6177	SMALL-LOSS	NONFOCAL	279	Too-Many
TCGA.AA.3561	17	6887	18046289	5508	-0.931	SMALL-LOSS	NONFOCAL	281	Too-Many
TCGA.DM.A1HA	17	6887	18289922	5560	-1.0054	SMALL-LOSS	NONFOCAL	289	Too-Many
TCGA.4N.A93T	17	6887	18917914	5612	-0.8832	SMALL-LOSS	NONFOCAL	298	Too-Many
TCGA.A6.5666	17	6887	18917914	5606	-0.8698	SMALL-LOSS	NONFOCAL	298	Too-Many
TCGA.A6.6782	17	6887	18917914	5587	-0.5443	SMALL-LOSS	NONFOCAL	298	Too-Many
TCGA.AA.3855	17	6887	18917914	5595	-0.6307	SMALL-LOSS	NONFOCAL	298	Too-Many
TCGA.AF.4110	17	6887	18917914	5610	-0.539	SMALL-LOSS	NONFOCAL	298	Too-Many
TCGA.F4.6808	17	6887	19227334	5613	-0.7236	SMALL-LOSS	NONFOCAL	303	Too-Many
TCGA.AA.3697	17	6887	19287418	5631	-0.835	SMALL-LOSS	NONFOCAL	306	Too-Many
TCGA.G4.6317	17	6887	19352181	5647	-0.7912	SMALL-LOSS	NONFOCAL	307	Too-Many
TCGA.DM.A28F	17	6887	19361210	5640	-0.5163	SMALL-LOSS	NONFOCAL	307	Too-Many
TCGA.AA.A01Z	17	6887	19497889	5672	-0.8221	SMALL-LOSS	NONFOCAL	308	Too-Many
TCGA.AD.6965	17	6887	20216094	5797	-0.6151	SMALL-LOSS	NONFOCAL	314	Too-Many
TCGA.F5.6813	17	6887	20216094	5801	-0.5349	SMALL-LOSS	NONFOCAL	314	Too-Many
TCGA.SS.A7HO	17	6887	20483881	5811	-0.8617	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.AA.3556	17	6887	20593907	5800	-0.7264	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.CM.5341	17	6887	20608647	5812	-0.5784	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.AG.4021	17	6887	20634858	5810	-0.8301	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.DM.A288	17	6887	20697796	5809	-0.5198	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.DM.A28E	17	6887	20711467	5812	-0.9644	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.DM.A285	17	6887	20739233	5822	-0.5306	SMALL-LOSS	NONFOCAL	316	Too-Many
TCGA.AF.A56L	17	6887	20987272	5878	-0.5177	SMALL-LOSS	NONFOCAL	318	Too-Many
TCGA.CA.5254	17	6887	21303006	5918	-0.5315	SMALL-LOSS	NONFOCAL	323	Too-Many
TCGA.CM.6169	17	6887	21516191	5920	-0.5869	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.F5.6571	17	6887	21516191	5950	-0.6929	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.QG.A5Z1	17	6887	21516191	5913	-0.9074	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.5M.AATE	17	6887	21519099	5962	-0.8494	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.A6.A567	17	6887	21519099	5910	-0.8807	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AG.3732	17	6887	21519099	5941	-0.6174	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.D5.5538	17	6887	21519099	5956	-0.6615	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.A6.2683	17	6887	21527045	5957	-0.6767	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AA.3511	17	6887	21527045	5946	-0.5686	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AA.3693	17	6887	21527045	5963	-0.8081	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AZ.4308	17	6887	21527045	5958	-0.6999	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.D5.6531	17	6887	21709232	5959	-0.6613	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AA.3496	17	6887	21717726	5943	-0.6821	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.A6.6138	17	6887	21806650	5976	-0.5569	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AD.6548	17	6887	21845700	5964	-0.5555	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AA.3979	17	6887	21952567	5965	-1.0345	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AG.A026	17	6887	21987295	5984	-0.6062	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AA.3660	17	6887	22002555	5993	-0.783	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AA.3655	17	6887	22019966	5995	-1.0071	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.QG.A5YV	17	6887	22030022	5959	-0.9635	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3727	17	6887	22030410	6000	-0.7783	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.CM.6675	17	6887	22120731	5992	-1.0868	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3673	17	6887	22159898	6010	-0.581	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3581	17	6887	22159898	6005	-0.6256	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3544	17	6887	22168794	6012	-0.7241	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3548	17	6887	22168794	6009	-0.7167	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3602	17	6887	22168794	5961	-0.7144	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3898	17	6887	22217679	5981	-0.5884	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AF.A56N	17	6887	22217882	6001	-0.6804	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3725	17	6887	22217882	6005	-0.5466	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DM.A1D0	17	6887	22217882	5971	-0.8207	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3524	17	6887	22235649	6005	-0.8353	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.A01Y	17	6887	22235649	5998	-0.899	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.CI.6622	17	6887	22235649	6006	-0.6396	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.EI.6514	17	6887	22235649	6008	-0.5518	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.5M.AAT5	17	6887	25313689	6014	-0.7988	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3494	17	6887	25313689	6013	-0.5183	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3517	17	6887	25313689	6008	-0.8512	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3519	17	6887	25313689	6015	-0.8704	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3858	17	6887	25313689	6014	-0.6948	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.A01S	17	6887	25313689	6013	-0.97895	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AD.A5EK	17	6887	25313689	5979	-1.0123	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AF.3911	17	6887	25313689	6017	-0.5433	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3575	17	6887	25313689	6018	-0.7402	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3594	17	6887	25313689	6014	-0.6046	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3742	17	6887	25313689	5957	-0.7216	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AG.3893	17	6887	25313689	5966	-0.5786	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AY.5543	17	6887	25313689	5958	-0.6563	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AZ.4681	17	6887	25313689	6010	-0.8693	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.CA.5256	17	6887	25313689	5961	-0.8266	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.CA.6715	17	6887	25313689	5982	-0.9442	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.CM.6170	17	6887	25313689	6014	-0.7358	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.D5.6532	17	6887	25313689	6011	-0.8775	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.D5.6538	17	6887	25313689	6011	-0.64	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DC.4749	17	6887	25313689	6018	-0.568	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DM.A1D4	17	6887	25313689	6014	-0.8123	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DM.A1D7	17	6887	25313689	6015	-0.627	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DM.A28A	17	6887	25313689	6007	-0.8114	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DY.A1DC	17	6887	25313689	6008	-0.7274	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.EI.6513	17	6887	25313689	6019	-0.8678	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.EI.6883	17	6887	25313689	5999	-0.6706	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.F5.6864	17	6887	25313689	6005	-0.594	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.G4.6306	17	6887	25313689	6010	-0.7972	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.NH.A6GA	17	6887	25313689	6007	-0.7339	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.NH.A6GB	17	6887	25313689	6009	-0.738	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.NH.A8F7	17	6887	25313689	5986	-0.5646	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.QG.A5YW	17	6887	25313689	5976	-0.544	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.QG.A5YX	17	6887	25313689	5968	-1.2245	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.D5.6541	17	6887	25343370	6016	-0.5422	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.D5.6932	17	6887	25343370	6002	-0.6654	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DM.A0XD	17	6887	25343370	6006	-0.6591	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.CM.6172	17	6887	25346691	6017	-0.5835	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.DM.A1DB	17	6887	25396370	6023	-0.7522	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AF.6655	17	6887	25398036	6012	-0.5966	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.CL.5918	17	6887	25398036	6008	-0.7117	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AF.A56K	17	6887	25483737	6021	-0.5433	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.AA.3688	17	6887	25600073	6066	-0.7718	SMALL-LOSS	NONFOCAL	326	Too-Many
TCGA.RU.A8FL	17	6887	25749381	6092	-0.598	SMALL-LOSS	NONFOCAL	327	Too-Many
TCGA.NH.A50V	17	6887	29148771	6497	-0.6695	SMALL-LOSS	NONFOCAL	385	Too-Many
TCGA.A6.2684	17	6887	31811475	6740	-0.6447	SMALL-LOSS	NONFOCAL	408	Too-Many
TCGA.EI.6509	17	6887	36425335	8758	-0.8248	SMALL-LOSS	NONFOCAL	479	Too-Many
TCGA.A6.2678	17	6887	37267060	8917	-0.8094	SMALL-LOSS	NONFOCAL	496	Too-Many
TCGA.F5.6863	17	6887	47407480	10862	-0.6977	SMALL-LOSS	NONFOCAL	770	Too-Many
TCGA.EF.5830	17	6887	54163635	12922	-0.7569	SMALL-LOSS	NONFOCAL	820	Too-Many
TCGA.DM.A1D9	17	6887	81048658	20139	-0.6764	SMALL-LOSS	NONFOCAL	1143	Too-Many
TCGA.DY.A1DF	17	6887	81048658	20156	-0.6117	SMALL-LOSS	NONFOCAL	1143	Too-Many
TCGA.AG.3906.01A	17	63577	1303271	80	-0.5907	SMALL-LOSS	NONFOCAL	15	"ABR,BHLHA9,C17orf97,FAM101B,FAM57A,GEMIN4,GLOD4,LOC100506388,NXN,RNMTL1,RPH3AL,TIMM22,TUSC5,VPS53,YWHAE"
TCGA.AA.A02E.01A	17	63577	3912871	436	-0.9173	SMALL-LOSS	NONFOCAL	68	"ABR,ASPA,ATP2A3,BHLHA9,C17orf85,C17orf97,CAMKK1,CLUH,CRK,CTNS,DPH1,EMC6,FAM101B,FAM57A,GEMIN4,GLOD4,GSG2,HIC1,INPP5K,ITGAE,LOC100506388,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,P2RX1,P2RX5,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RNMTL1,RPA1,RPH3AL,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SHPK,SLC43A2,SMG6,SMYD4,SPATA22,SRR,TAX1BP3,TIMM22,TLCD2,TRPV1,TRPV3,TSR1,TUSC5,VPS53,WDR81,YWHAE,ZZEF1"
TCGA.AG.A01N.01A	17	63577	5347488	820	-0.6895	SMALL-LOSS	NONFOCAL	110	Too-Many
TCGA.AG.A00H.01A	17	63577	21087644	2544	-0.5711	SMALL-LOSS	NONFOCAL	318	Too-Many
TCGA.AA.A02J.01A	17	63577	25972811	2379	-0.7506	SMALL-LOSS	NONFOCAL	328	Too-Many
TCGA.AA.A02F.01A	17	65406	81006295	7573	-0.7791	SMALL-LOSS	NONFOCAL	1141	Too-Many
TCGA.AA.A02H.01A	17	69372	13980074	1852	-0.5625	SMALL-LOSS	NONFOCAL	240	Too-Many
TCGA.AG.A01J.01A	17	69372	18833812	2305	-0.5685	SMALL-LOSS	NONFOCAL	295	Too-Many
TCGA.AG.A023.01A	17	69372	21826060	2487	-0.6283	SMALL-LOSS	NONFOCAL	324	Too-Many
TCGA.AA.A00O.01A	17	69372	26101231	2509	-0.6655	SMALL-LOSS	NONFOCAL	329	Too-Many
TCGA.AM.5820	17	181081	25313689	5960	-0.7058	SMALL-LOSS	NONFOCAL	325	Too-Many
TCGA.AA.A010.01A	17	262892	1201455	84	-0.5594	SMALL-LOSS	NONFOCAL	12	"ABR,BHLHA9,C17orf97,FAM101B,FAM57A,GEMIN4,GLOD4,NXN,RNMTL1,TIMM22,TUSC5,VPS53"
TCGA.AA.3952	17	611025	25313689	5894	-0.5717	SMALL-LOSS	NONFOCAL	321	Too-Many
TCGA.AZ.4684.01A	17	694723	2380939	288	-0.6294	SMALL-LOSS	NONFOCAL	31	"ABR,BHLHA9,CRK,DPH1,HIC1,INPP5K,METTL16,MNT,MYO1C,NXN,OVCA2,PITPNA,PRPF8,RILP,RNMTL1,RPA1,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,WDR81,YWHAE"
TCGA.AG.3909.01A	17	722632	1551596	92	-0.5476	SMALL-LOSS	NONFOCAL	13	"ABR,BHLHA9,CRK,INPP5K,MYO1C,NXN,PITPNA,RILP,SCARF1,SLC43A2,TIMM22,TUSC5,YWHAE"
TCGA.AA.3509.01A	17	882532	3336145	348	-0.8054	SMALL-LOSS	NONFOCAL	42	"ABR,BHLHA9,CLUH,CRK,DPH1,HIC1,INPP5K,METTL16,MNT,MYO1C,NXN,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1G1,OR3A1,OR3A2,OR3A3,OVCA2,PAFAH1B1,PITPNA,PRPF8,RAP1GAP2,RILP,RPA1,RTN4RL1,SCARF1,SERPINF1,SERPINF2,SGSM2,SLC43A2,SMG6,SMYD4,SRR,TIMM22,TLCD2,TSR1,TUSC5,WDR81,YWHAE"
TCGA.A6.6650	17	1522876	25402268	5311	-0.5193	SMALL-LOSS	NONFOCAL	306	Too-Many
TCGA.AG.3906.01A	17	2703748	3773051	147	-0.596	SMALL-LOSS	NONFOCAL	24	"ASPA,C17orf85,CAMKK1,CTNS,EMC6,GSG2,ITGAE,OR1A1,OR1A2,OR1D2,OR1D5,OR1E1,OR1E2,OR1G1,OR3A1,OR3A2,OR3A3,P2RX5,RAP1GAP2,SHPK,SPATA22,TAX1BP3,TRPV1,TRPV3"
TCGA.DC.4745	17	3335889	15189820	4212	-0.9628	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.D5.6533	17	3335889	22159898	5277	-0.6702	SMALL-LOSS	NONFOCAL	274	Too-Many
TCGA.AA.3509.01A	17	3370683	16365521	1934	-0.7638	SMALL-LOSS	NONFOCAL	208	Too-Many
TCGA.AZ.4684.01A	17	3370683	16365521	1934	-0.5612	SMALL-LOSS	NONFOCAL	208	Too-Many
TCGA.G4.6295	17	3390007	15567668	4310	-1.0972	SMALL-LOSS	NONFOCAL	196	Too-Many
TCGA.T9.A92H	17	3660863	21519099	5131	-0.7696	SMALL-LOSS	NONFOCAL	262	Too-Many
TCGA.AA.3662	17	3818829	4538499	188	-0.5225	SMALL-LOSS	NONFOCAL	12	"ALOX15,ANKFY1,ATP2A3,CYB5D2,GGT6,MYBBP1A,P2RX1,SMTNL2,SPNS2,SPNS3,UBE2G1,ZZEF1"
TCGA.AA.A02E.01A	17	3919568	21826060	2054	-0.7636	SMALL-LOSS	NONFOCAL	257	Too-Many
TCGA.EI.6508	17	4081974	25313689	5062	-0.736	SMALL-LOSS	NONFOCAL	256	Too-Many
TCGA.AZ.4682	17	4153806	19307165	4664	-0.7736	SMALL-LOSS	NONFOCAL	236	Too-Many
TCGA.QL.A97D	17	4323335	11742164	2486	-0.5613	SMALL-LOSS	NONFOCAL	162	Too-Many
TCGA.EI.7002	17	4379225	21519099	4934	-0.5188	SMALL-LOSS	NONFOCAL	253	Too-Many
TCGA.CK.5914.01A	17	4389482	5051800	238	-0.9985	SMALL-LOSS	NONFOCAL	32	"ALOX15,ARRB2,C17orf107,CAMTA2,CHRNE,CXCL16,ENO3,GGT6,GLTPD2,GP1BA,INCA1,KIF1C,MED11,MINK1,MYBBP1A,PELP1,PFN1,PLD2,PSMB6,RNF167,SLC25A11,SLC52A1,SMTNL2,SPAG7,SPNS2,SPNS3,TM4SF5,USP6,VMO1,ZFP3,ZMYND15,ZNF232"
TCGA.AA.A00N.01A	17	4435789	4835853	137	-0.5917	SMALL-LOSS	NONFOCAL	19	"ALOX15,ARRB2,C17orf107,CHRNE,CXCL16,GGT6,GLTPD2,GP1BA,MED11,MINK1,MYBBP1A,PELP1,PLD2,PSMB6,SMTNL2,SPNS2,TM4SF5,VMO1,ZMYND15"
TCGA.AG.3726	17	4517265	21527045	4908	-0.6807	SMALL-LOSS	NONFOCAL	248	Too-Many
TCGA.AG.3584	17	4517265	25313689	4956	-0.742	SMALL-LOSS	NONFOCAL	249	Too-Many
TCGA.AA.3662	17	4540646	5770669	324	-0.5969	SMALL-LOSS	NONFOCAL	38	"ALOX15,ARRB2,C17orf107,C1QBP,CAMTA2,CHRNE,CXCL16,DERL2,DHX33,ENO3,GLTPD2,GP1BA,INCA1,KIF1C,LOC728392,MED11,MINK1,MIS12,NLRP1,NUP88,PELP1,PFN1,PLD2,PSMB6,RABEP1,RNF167,RPAIN,SCIMP,SLC25A11,SLC52A1,SPAG7,TM4SF5,USP6,VMO1,ZFP3,ZMYND15,ZNF232,ZNF594"
TCGA.AF.2693	17	4540646	20849768	4786	-0.6214	SMALL-LOSS	NONFOCAL	240	Too-Many
TCGA.AZ.6603	17	4540646	21516191	4885	-0.7168	SMALL-LOSS	NONFOCAL	248	Too-Many
TCGA.D5.5541	17	4540646	21516191	4892	-0.8855	SMALL-LOSS	NONFOCAL	248	Too-Many
TCGA.F5.6465	17	4540646	25313689	4955	-0.5904	SMALL-LOSS	NONFOCAL	249	Too-Many
TCGA.A6.5659	17	4544550	20030959	4361	-0.7345	SMALL-LOSS	NONFOCAL	237	Too-Many
TCGA.DY.A0XA	17	4550188	16617185	4129	-0.7363	SMALL-LOSS	NONFOCAL	186	Too-Many
TCGA.CM.6166	17	4550188	21175536	4855	-0.73	SMALL-LOSS	NONFOCAL	243	Too-Many
TCGA.A6.2677	17	4550188	22235649	4595	-0.9543	SMALL-LOSS	NONFOCAL	248	Too-Many
TCGA.DT.5265	17	4565716	25343370	4943	-0.5719	SMALL-LOSS	NONFOCAL	248	Too-Many
TCGA.AA.A01C.01A	17	4574681	8366554	922	-0.5741	SMALL-LOSS	NONFOCAL	130	Too-Many
TCGA.AG.A01W.01A	17	4989375	6305376	117	-0.52	SMALL-LOSS	NONFOCAL	15	"C1QBP,DERL2,DHX33,LOC728392,MIS12,NLRP1,NUP88,RABEP1,RPAIN,SCIMP,USP6,WSCD1,ZFP3,ZNF232,ZNF594"
TCGA.AA.3967.01A	17	5037175	7081747	250	-0.5334	SMALL-LOSS	NONFOCAL	33	"AIPL1,ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,C1QBP,CLEC10A,DERL2,DHX33,FAM64A,FBXO39,KIAA0753,LOC728392,MED31,MIS12,NLRP1,NUP88,PITPNM3,RABEP1,RNASEK,RPAIN,SCIMP,SLC13A5,SLC16A11,SLC16A13,TEKT1,TXNDC17,USP6,WSCD1,XAF1,ZNF594"
TCGA.AG.3906.01A	17	5038457	7140651	278	-0.6778	SMALL-LOSS	NONFOCAL	37	"ACADVL,AIPL1,ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,C1QBP,CLEC10A,DERL2,DHX33,DLG4,DVL2,FAM64A,FBXO39,KIAA0753,LOC728392,MED31,MIS12,NLRP1,NUP88,PHF23,PITPNM3,RABEP1,RNASEK,RPAIN,SCIMP,SLC13A5,SLC16A11,SLC16A13,TEKT1,TXNDC17,USP6,WSCD1,XAF1,ZNF594"
TCGA.AG.A01L.01A	17	5047945	7165110	280	-0.5247	SMALL-LOSS	NONFOCAL	41	"ACADVL,AIPL1,ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,C1QBP,CLDN7,CLEC10A,CTDNEP1,DERL2,DHX33,DLG4,DVL2,ELP5,FAM64A,FBXO39,GABARAP,KIAA0753,LOC728392,MED31,MIS12,NLRP1,NUP88,PHF23,PITPNM3,RABEP1,RNASEK,RPAIN,SCIMP,SLC13A5,SLC16A11,SLC16A13,TEKT1,TXNDC17,USP6,WSCD1,XAF1,ZNF594"
TCGA.AG.A01N.01A	17	5356888	21319226	1785	-0.6399	SMALL-LOSS	NONFOCAL	214	Too-Many
TCGA.AA.3514	17	6101083	7114075	357	-0.6954	SMALL-LOSS	NONFOCAL	21	"AIPL1,ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,CLEC10A,DLG4,FAM64A,FBXO39,KIAA0753,MED31,PITPNM3,RNASEK,SLC13A5,SLC16A11,SLC16A13,TEKT1,TXNDC17,XAF1"
TCGA.AF.6672	17	6101083	7145280	359	-1.0803	SMALL-LOSS	NONFOCAL	25	"ACADVL,AIPL1,ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,CLEC10A,DLG4,DVL2,FAM64A,FBXO39,GABARAP,KIAA0753,MED31,PHF23,PITPNM3,RNASEK,SLC13A5,SLC16A11,SLC16A13,TEKT1,TXNDC17,XAF1"
TCGA.AG.3909.01A	17	6526162	7122079	104	-1.0391	SMALL-LOSS	NONFOCAL	19	"ACADVL,ALOX12,ASGR1,ASGR2,BCL6B,C17orf100,C17orf49,CLEC10A,DLG4,FBXO39,KIAA0753,MED31,RNASEK,SLC13A5,SLC16A11,SLC16A13,TEKT1,TXNDC17,XAF1"
TCGA.AZ.4614	17	6843325	16581800	3324	-0.8801	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.D5.6923	17	7065373	7863343	138	-0.5358	SMALL-LOSS	NONFOCAL	53	"ACADVL,ACAP1,ASGR1,ATP1B2,C17orf74,CD68,CHD3,CHRNB1,CLDN7,CNTROB,CTDNEP1,CYB5D1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FGF11,FXR2,GABARAP,GPS2,KCNAB3,KCTD11,KDM6B,MPDU1,NAA38,NEURL4,NLGN2,PHF23,PLSCR3,POLR2A,SAT2,SENP3,SHBG,SLC2A4,SLC35G6,SOX15,SPEM1,TMEM102,TMEM256,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,WRAP53,YBX2,ZBTB4"
TCGA.CK.5914.01A	17	7081747	7359066	152	-1.232	SMALL-LOSS	NONFOCAL	26	"ACADVL,ACAP1,ASGR1,C17orf74,CHRNB1,CLDN7,CTDNEP1,DLG4,DVL2,EIF5A,ELP5,FGF11,GABARAP,GPS2,KCTD11,NEURL4,NLGN2,PHF23,PLSCR3,SLC2A4,SPEM1,TMEM102,TMEM256,TMEM95,TNK1,YBX2"
TCGA.AA.A00N.01A	17	7218237	7385277	83	-0.8225	SMALL-LOSS	NONFOCAL	16	"ACAP1,C17orf74,CHRNB1,FGF11,GPS2,KCTD11,NEURL4,NLGN2,PLSCR3,SLC35G6,SPEM1,TMEM102,TMEM256,TMEM95,TNK1,ZBTB4"
TCGA.AG.3909.01A	17	7228488	7462921	93	-0.9212	SMALL-LOSS	NONFOCAL	19	"ACAP1,C17orf74,CHRNB1,FGF11,KCTD11,NEURL4,NLGN2,PLSCR3,POLR2A,SLC35G6,SPEM1,TMEM102,TMEM256,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,ZBTB4"
TCGA.AG.A01W.01A	17	7445405	7601093	45	-0.8837	SMALL-LOSS	NONFOCAL	14	"ATP1B2,CD68,EIF4A1,FXR2,MPDU1,SAT2,SENP3,SHBG,SOX15,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TP53,WRAP53"
TCGA.AG.4009.01A	17	7467892	7606293	61	-0.6004	SMALL-LOSS	NONFOCAL	11	"ATP1B2,CD68,EIF4A1,FXR2,MPDU1,SAT2,SENP3,SHBG,SOX15,TP53,WRAP53"
TCGA.CK.5914.01A	17	7482934	7643069	60	-1.112	SMALL-LOSS	NONFOCAL	11	"ATP1B2,CD68,DNAH2,EFNB3,FXR2,MPDU1,SAT2,SHBG,SOX15,TP53,WRAP53"
TCGA.CK.5912	17	7665292	21516191	3961	-0.8196	SMALL-LOSS	NONFOCAL	146	Too-Many
TCGA.AA.3662	17	7705409	81048658	18152	-0.5465	SMALL-LOSS	NONFOCAL	964	Too-Many
TCGA.CK.5914.01A	17	7907142	8243363	134	-0.9436	SMALL-LOSS	NONFOCAL	16	"ALOX12B,ALOX15B,ALOXE3,ARHGEF15,AURKB,C17orf59,CTC1,GUCY2D,HES7,ODF4,PER1,PFAS,RANGRF,SLC25A35,TMEM107,VAMP2"
TCGA.D5.5540	17	7974497	25313689	3973	-0.8673	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.AG.A01L.01A	17	8243363	9545024	120	-0.5179	SMALL-LOSS	NONFOCAL	14	"CCDC42,CFAP52,KRBA2,MFSD6L,MYH10,NDEL1,NTN1,ODF4,PIK3R5,PIK3R6,RNF222,RPL26,SPDYE4,STX8"
TCGA.AA.3967.01A	17	8283067	21825440	1184	-0.5527	SMALL-LOSS	NONFOCAL	120	Too-Many
TCGA.AG.3906.01A	17	8701751	10265386	136	-0.5469	SMALL-LOSS	NONFOCAL	12	"CFAP52,DHRS7C,GAS7,GLP2R,MFSD6L,MYH13,NTN1,PIK3R5,PIK3R6,RCVRN,STX8,USP43"
TCGA.AG.A00C.01A	17	8725842	10584386	245	-0.7857	SMALL-LOSS	NONFOCAL	17	"CFAP52,DHRS7C,GAS7,GLP2R,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,NTN1,PIK3R5,PIK3R6,RCVRN,SCO1,STX8,USP43"
TCGA.AA.3514	17	10241564	16800879	2306	-0.7464	SMALL-LOSS	NONFOCAL	42	"ADORA2B,ADPRM,ARHGAP44,CCDC144A,CDRT1,CDRT15,CDRT4,CENPV,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,LRRC75A,MAP2K4,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,MYOCD,NCOR1,PIGL,PIRT,PMP22,SCO1,SHISA6,TBC1D26,TEKT3,TMEM220,TRIM16,TRPV2,TTC19,TVP23C,TVP23C-CDRT4,UBB,ZNF18,ZNF286A,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.3611.01A	17	10247170	21188156	767	-0.5335	SMALL-LOSS	NONFOCAL	100	"ADORA2B,ADPRM,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ARHGAP44,ATPAF2,B9D1,CCDC144A,CCDC144NL,CDRT1,CDRT15,CDRT15L2,CDRT4,CENPV,COPS3,COX10,DHRS7B,DNAH9,DRG2,ELAC2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,HS3ST3A1,HS3ST3B1,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAP2K4,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYH1,MYH13,MYH2,MYH3,MYH4,MYH8,MYO15A,MYOCD,NATD1,NCOR1,NT5M,PEMT,PIGL,PIRT,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SCO1,SHISA6,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TMEM220,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF18,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.3906.01A	17	10439784	15215529	205	-0.613	SMALL-LOSS	NONFOCAL	19	"ADPRM,ARHGAP44,CDRT15,COX10,DNAH9,ELAC2,HS3ST3A1,HS3ST3B1,MAP2K4,MYH2,MYH3,MYOCD,PIRT,PMP22,SCO1,SHISA6,TEKT3,TMEM220,ZNF18"
TCGA.AA.3560	17	10450815	81048658	17213	-0.7613	SMALL-LOSS	NONFOCAL	917	Too-Many
TCGA.A6.6652	17	10958453	25313689	2877	-0.8493	SMALL-LOSS	NONFOCAL	94	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ARHGAP44,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT1,CDRT15,CDRT15L2,CDRT4,CENPV,COPS3,COX10,DHRS7B,DNAH9,DRG2,ELAC2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,HS3ST3A1,HS3ST3B1,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAP2K4,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,MYOCD,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHISA6,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF18,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3848	17	11105793	25313689	2829	-0.8086	SMALL-LOSS	NONFOCAL	94	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ARHGAP44,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT1,CDRT15,CDRT15L2,CDRT4,CENPV,COPS3,COX10,DHRS7B,DNAH9,DRG2,ELAC2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,HS3ST3A1,HS3ST3B1,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAP2K4,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,MYOCD,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHISA6,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF18,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.QL.A97D	17	11956991	81048658	16618	-0.5485	SMALL-LOSS	NONFOCAL	908	Too-Many
TCGA.DM.A28H	17	12049034	21387656	2398	-0.656	SMALL-LOSS	NONFOCAL	88	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ARHGAP44,ATPAF2,B9D1,CCDC144A,CCDC144NL,CDRT1,CDRT15,CDRT15L2,CDRT4,CENPV,COPS3,COX10,DHRS7B,DRG2,ELAC2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,HS3ST3A1,HS3ST3B1,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,MYOCD,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3667	17	13826831	25313689	1713	-0.7919	SMALL-LOSS	NONFOCAL	86	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT1,CDRT15,CDRT15L2,CDRT4,CENPV,COPS3,COX10,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,HS3ST3B1,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PMP22,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TEKT3,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,TVP23B,TVP23C,TVP23C-CDRT4,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.DY.A1DG	17	15565257	18626907	530	-0.5989	SMALL-LOSS	NONFOCAL	44	"ADORA2B,ALKBH5,ATPAF2,CCDC144A,CENPV,COPS3,DRG2,EVPLL,FLCN,FLII,GID4,LGALS9C,LLGL1,LRRC48,LRRC75A,MED9,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,RAI1,RASD1,SHMT1,SMCR8,SREBF1,TBC1D26,TBC1D28,TNFRSF13B,TOM1L2,TOP3A,TRIM16,TRIM16L,TRPV2,TTC19,UBB,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.3591	17	15615120	25313689	969	-0.8116	SMALL-LOSS	NONFOCAL	76	"ADORA2B,AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144A,CCDC144NL,CDRT15L2,CENPV,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LRRC75A,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D26,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TRPV2,TTC19,TVP23B,UBB,ULK2,USP22,ZNF286A,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AA.3692	17	15659326	18917512	562	-0.7165	SMALL-LOSS	NONFOCAL	46	"ADORA2B,ALKBH5,ATPAF2,CCDC144A,CENPV,COPS3,DRG2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,LGALS9C,LLGL1,LRRC48,LRRC75A,MED9,MIEF2,MPRIP,MYO15A,NCOR1,NT5M,PEMT,PIGL,PLD6,PRPSAP2,RAI1,RASD1,SHMT1,SLC5A10,SMCR8,SREBF1,TBC1D28,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TRPV2,TTC19,TVP23B,UBB,ZNF286B,ZNF287,ZNF624,ZSWIM7"
TCGA.AG.3906.01A	17	16285183	17700003	119	-0.6415	SMALL-LOSS	NONFOCAL	16	"CCDC144A,COPS3,FLCN,LRRC75A,MED9,MPRIP,NT5M,PEMT,PLD6,RAI1,RASD1,TNFRSF13B,TRPV2,UBB,ZNF287,ZNF624"
TCGA.AA.3972	17	16414855	35947225	3476	-0.7562	SMALL-LOSS	NONFOCAL	209	Too-Many
TCGA.AZ.4684.01A	17	16635855	18392201	318	-0.5854	SMALL-LOSS	NONFOCAL	27	"ALKBH5,ATPAF2,CCDC144A,COPS3,DRG2,EVPLL,FLCN,FLII,GID4,LGALS9C,LLGL1,LRRC48,MED9,MIEF2,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SHMT1,SMCR8,SREBF1,TNFRSF13B,TOM1L2,TOP3A"
TCGA.AA.3509.01A	17	16676799	18390923	309	-0.7877	SMALL-LOSS	NONFOCAL	27	"ALKBH5,ATPAF2,CCDC144A,COPS3,DRG2,EVPLL,FLCN,FLII,GID4,LGALS9C,LLGL1,LRRC48,MED9,MIEF2,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SHMT1,SMCR8,SREBF1,TNFRSF13B,TOM1L2,TOP3A"
TCGA.AZ.4614	17	16735531	25313689	805	-0.8338	SMALL-LOSS	NONFOCAL	62	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.DY.A0XA	17	16763554	21527045	762	-0.7575	SMALL-LOSS	NONFOCAL	61	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MYO15A,NATD1,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.AZ.6608	17	16763554	22097292	802	-0.6306	SMALL-LOSS	NONFOCAL	62	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.G4.6295	17	16763554	26164493	988	-1.1529	SMALL-LOSS	NONFOCAL	66	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,KSR1,LGALS9,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NOS2,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,WSB1,ZNF286B"
TCGA.DY.A1DD	17	16763554	27055439	1088	-0.9089	SMALL-LOSS	NONFOCAL	92	"AKAP10,ALDH3A1,ALDH3A2,ALDOC,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,FOXN1,GID4,GRAP,GRAPL,IFT20,KCNJ12,KCNJ18,KIAA0100,KSR1,LGALS9,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,LYRM9,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NARR,NATD1,NLK,NOS2,NT5M,PEMT,PIGS,PLD6,POLDIP2,PROCA1,PRPSAP2,RAB34,RAI1,RASD1,RNF112,RPL23A,SARM1,SDF2,SEBOX,SGK494,SHMT1,SLC13A2,SLC46A1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPAG5,SPECC1,SREBF1,SUPT6H,TBC1D28,TLCD1,TMEM11,TMEM199,TMEM97,TNFAIP1,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,UNC119,USP22,VTN,WSB1,ZNF286B"
TCGA.CM.6679	17	16769800	25313689	815	-0.82275	SMALL-LOSS	NONFOCAL	62	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.A6.6140	17	16769800	25346691	817	-0.7938	SMALL-LOSS	NONFOCAL	62	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.A6.3808.01A	17	16842874	18286774	293	-0.5406	SMALL-LOSS	NONFOCAL	25	"ALKBH5,ATPAF2,COPS3,DRG2,EVPLL,FLCN,FLII,GID4,LLGL1,LRRC48,MED9,MIEF2,MPRIP,MYO15A,NT5M,PEMT,PLD6,RAI1,RASD1,SHMT1,SMCR8,SREBF1,TNFRSF13B,TOM1L2,TOP3A"
TCGA.A6.5656	17	16851341	25313689	782	-0.9162	SMALL-LOSS	NONFOCAL	62	"AKAP10,ALDH3A1,ALDH3A2,ALKBH5,ATPAF2,B9D1,C17orf51,CCDC144NL,CDRT15L2,COPS3,DHRS7B,DRG2,EPN2,EVPLL,FAM83G,FBXW10,FLCN,FLII,GID4,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LLGL1,LOC388436,LOC79999,LRRC48,MAP2K3,MAPK7,MED9,MFAP4,MIEF2,MPRIP,MTRNR2L1,MYO15A,NATD1,NT5M,PEMT,PLD6,PRPSAP2,RAI1,RASD1,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,SREBF1,TBC1D28,TMEM11,TNFRSF13B,TOM1L2,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.CK.5914.01A	17	17796947	18195930	148	-0.864	SMALL-LOSS	NONFOCAL	11	"ALKBH5,ATPAF2,DRG2,FLII,GID4,LLGL1,LRRC48,MIEF2,MYO15A,TOM1L2,TOP3A"
TCGA.AG.3906.01A	17	18165976	21826060	305	-0.536	SMALL-LOSS	NONFOCAL	41	"AKAP10,ALDH3A1,ALDH3A2,B9D1,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,EPN2,EVPLL,FAM83G,FBXW10,GRAP,GRAPL,KCNJ12,KCNJ18,LGALS9B,LGALS9C,LOC388436,LOC79999,MAP2K3,MAPK7,MFAP4,MIEF2,NATD1,PRPSAP2,RNF112,SHMT1,SLC47A1,SLC47A2,SLC5A10,SMCR8,SPECC1,TBC1D28,TMEM11,TOP3A,TRIM16L,TVP23B,ULK2,USP22,ZNF286B"
TCGA.CK.5914.01A	17	18259150	19470357	141	-0.7298	SMALL-LOSS	NONFOCAL	21	"B9D1,EPN2,EVPLL,FAM83G,FBXW10,GRAP,GRAPL,LGALS9C,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SHMT1,SLC47A1,SLC5A10,TBC1D28,TRIM16L,TVP23B,ZNF286B"
TCGA.DM.A282.01A	17	18486722	19559632	134	-0.6779	SMALL-LOSS	NONFOCAL	19	"ALDH3A2,B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC5A10,TBC1D28,TRIM16L,TVP23B,ZNF286B"
TCGA.AA.3509.01A	17	18513340	20321311	221	-0.8481	SMALL-LOSS	NONFOCAL	24	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TBC1D28,TRIM16L,TVP23B,ULK2,ZNF286B"
TCGA.AZ.4684.01A	17	18525761	20321311	220	-0.6314	SMALL-LOSS	NONFOCAL	24	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TBC1D28,TRIM16L,TVP23B,ULK2,ZNF286B"
TCGA.AA.3975	17	18562719	20221327	251	-0.6905	SMALL-LOSS	NONFOCAL	23	"AKAP10,ALDH3A1,ALDH3A2,B9D1,EPN2,FAM83G,FBXW10,GRAP,GRAPL,LOC388436,LOC79999,MAPK7,MFAP4,PRPSAP2,RNF112,SLC47A1,SLC47A2,SLC5A10,SPECC1,TRIM16L,TVP23B,ULK2,ZNF286B"
TCGA.AA.A01Z	17	19543161	21901754	303	-0.8963	SMALL-LOSS	NONFOCAL	17	"AKAP10,ALDH3A1,ALDH3A2,C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,LGALS9B,MAP2K3,NATD1,SLC47A2,SPECC1,TMEM11,ULK2,USP22"
TCGA.CK.5914.01A	17	20483048	25636088	54	-0.5771	SMALL-LOSS	NONFOCAL	12	"C17orf51,CCDC144NL,CDRT15L2,DHRS7B,KCNJ12,KCNJ18,MAP2K3,MTRNR2L1,NATD1,TMEM11,USP22,WSB1"
TCGA.G4.6295	17	26309417	29572283	366	-0.9816	SMALL-LOSS	NONFOCAL	59	"ABHD15,ADAP2,ALDOC,ANKRD13B,ATAD5,BLMH,CORO6,CPD,CRLF3,CRYBA1,DHRS13,EFCAB5,ERAL1,FAM222B,FLOT2,FOXN1,GIT1,GOSR1,IFT20,KIAA0100,MYO18A,NARR,NEK8,NF1,NLK,NSRP1,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RNF135,RPL23A,SARM1,SDF2,SEBOX,SEZ6,SGK494,SLC13A2,SLC46A1,SLC6A4,SPAG5,SSH2,SUPT6H,TAOK1,TBC1D29,TEFM,TIAF1,TLCD1,TMEM199,TMEM97,TMIGD1,TNFAIP1,TP53I13,TRAF4,UNC119,VTN"
TCGA.AA.A01Z	17	26630842	27123815	57	-0.9551	SMALL-LOSS	NONFOCAL	27	"ALDOC,FAM222B,FOXN1,IFT20,KIAA0100,NARR,NEK8,PIGS,POLDIP2,PROCA1,RAB34,RPL23A,SARM1,SDF2,SEBOX,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN"
TCGA.AA.A02E.01A	17	27285992	36491904	885	-0.6625	SMALL-LOSS	NONFOCAL	118	Too-Many
TCGA.AA.A01Z	17	27978454	31607452	689	-0.8411	SMALL-LOSS	NONFOCAL	33	"ADAP2,ASIC2,ATAD5,BLMH,C17orf75,CDK5R1,COPRS,CPD,CRLF3,EFCAB5,EVI2A,EVI2B,GOSR1,LRRC37B,MYO1D,NF1,NSRP1,OMG,PSMD11,RAB11FIP4,RHBDL3,RHOT1,RNF135,SLC6A4,SPACA3,SSH2,SUZ12,TBC1D29,TEFM,TMEM98,TMIGD1,UTP6,ZNF207"
TCGA.AY.A8YK	17	28952285	30314503	221	-0.9377	SMALL-LOSS	NONFOCAL	13	"ADAP2,ATAD5,COPRS,CRLF3,EVI2A,EVI2B,NF1,OMG,RAB11FIP4,RNF135,SUZ12,TEFM,UTP6"
TCGA.G4.6322	17	29848903	30835832	190	-0.6049	SMALL-LOSS	NONFOCAL	12	"C17orf75,CDK5R1,COPRS,LRRC37B,MYO1D,PSMD11,RAB11FIP4,RHBDL3,RHOT1,SUZ12,UTP6,ZNF207"
TCGA.NH.A50V	17	30791213	32802831	1003	-0.6942	SMALL-LOSS	NONFOCAL	12	"ASIC2,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CDK5R1,MYO1D,PSMD11,SPACA3,TMEM98"
TCGA.AA.3869	17	30918181	33631328	1272	-0.5177	SMALL-LOSS	NONFOCAL	22	"ASIC2,C17orf102,CCL1,CCL11,CCL13,CCL2,CCL7,CCL8,CCT6B,FNDC8,LIG3,MYO1D,NLE1,RAD51D,RFFL,SLC35G3,SLFN5,SPACA3,TMEM132E,TMEM98,UNC45B,ZNF830"
TCGA.A6.2684	17	32840109	65256893	7134	-0.5271	SMALL-LOSS	NONFOCAL	511	Too-Many
TCGA.AG.3581	17	33112745	37665553	975	-0.6032	SMALL-LOSS	NONFOCAL	87	"AATF,ACACA,AP2B1,ARHGAP23,ARL5C,C17orf50,C17orf78,C17orf96,C17orf98,CACNB1,CCL14,CCL15,CCL16,CCL18,CCL23,CCL3,CCL3L1,CCL3L3,CCL4,CCL4L1,CCL4L2,CCL5,CCT6B,CDK12,CISD3,CWC25,DDX52,DHRS11,DUSP14,FBXL20,FBXO47,FNDC8,GAS2L2,GGNBP2,GPR179,HEATR9,HNF1B,LASP1,LHX1,LIG3,LOC101060321,LOC101060389,LOC102723859,LOC102724862,LYZL6,MED1,MLLT6,MMP28,MRM1,MRPL45,MYO19,NLE1,PCGF2,PEX12,PIGW,PIP4K2B,PLXDC1,PSMB3,RAD51D,RASL10B,RDM1,RFFL,RPL19,RPL23,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,SOCS7,SRCIN1,STAC2,SYNRG,TADA2A,TAF15,TBC1D3,TBC1D3B,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,UNC45B,ZNF830,ZNHIT3"
TCGA.AA.3688	17	33189291	33955242	187	-0.7229	SMALL-LOSS	NONFOCAL	17	"AP2B1,CCT6B,FNDC8,LIG3,NLE1,PEX12,RAD51D,RFFL,SLC35G3,SLFN11,SLFN12,SLFN12L,SLFN13,SLFN14,SLFN5,UNC45B,ZNF830"
TCGA.NH.A50V	17	34193087	45179323	2179	-0.6704	SMALL-LOSS	NONFOCAL	286	Too-Many
TCGA.DM.A1D0	17	34821057	37610122	605	-0.8062	SMALL-LOSS	NONFOCAL	48	"AATF,ACACA,ARHGAP23,ARL5C,C17orf78,C17orf96,C17orf98,CACNB1,CISD3,CWC25,DDX52,DHRS11,DUSP14,FBXL20,FBXO47,GGNBP2,GPR179,HNF1B,LASP1,LHX1,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MED1,MLLT6,MRM1,MRPL45,MYO19,PCGF2,PIGW,PIP4K2B,PLXDC1,PSMB3,RPL19,RPL23,SOCS7,SRCIN1,STAC2,SYNRG,TADA2A,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L,ZNHIT3"
TCGA.AA.A01Z	17	36075672	40154776	848	-0.8268	SMALL-LOSS	NONFOCAL	142	Too-Many
TCGA.CK.5914.01A	17	36093508	36517539	26	-0.53	SMALL-LOSS	NONFOCAL	14	"GPR179,HNF1B,LOC101060321,LOC101060389,LOC102723859,LOC102724862,MRPL45,SOCS7,TBC1D3,TBC1D3C,TBC1D3F,TBC1D3H,TBC1D3K,TBC1D3L"
TCGA.EI.6509	17	38067019	38423478	47	-0.8423	SMALL-LOSS	NONFOCAL	13	"CASC3,CSF3,GSDMA,GSDMB,LRRC3C,MED24,MSL1,NR1D1,ORMDL3,PSMD3,RAPGEFL1,THRA,WIPF2"
TCGA.AG.A026	17	39035572	41715232	572	-0.571	SMALL-LOSS	NONFOCAL	116	Too-Many
TCGA.EI.6509	17	39174463	60579994	5116	-0.7856	SMALL-LOSS	NONFOCAL	330	Too-Many
TCGA.CK.5914.01A	17	39185914	39340627	30	-0.5332	SMALL-LOSS	NONFOCAL	18	"KRTAP1-1,KRTAP1-3,KRTAP1-4,KRTAP2-1,KRTAP2-2,KRTAP2-3,KRTAP2-4,KRTAP4-1,KRTAP4-11,KRTAP4-12,KRTAP4-2,KRTAP4-3,KRTAP4-4,KRTAP4-5,KRTAP4-6,KRTAP4-7,KRTAP4-8,KRTAP4-9"
TCGA.AA.A00N.01A	17	40039348	40719569	198	-0.5215	SMALL-LOSS	NONFOCAL	22	"ACLY,ATP6V0A1,CNP,COASY,DHX58,DNAJC7,GHDC,HCRT,HSD17B1,HSPB9,KAT2A,KCNH4,MLX,NAGLU,NKIRAS2,PTRF,RAB5C,STAT3,STAT5A,STAT5B,TTC25,ZNF385C"
TCGA.AA.3862.01A	17	40052796	40315198	83	-0.5225	SMALL-LOSS	NONFOCAL	11	"ACLY,CNP,DHX58,DNAJC7,HSPB9,KAT2A,KCNH4,NKIRAS2,RAB5C,TTC25,ZNF385C"
TCGA.CM.5341	17	40127536	41599382	177	-0.5509	SMALL-LOSS	NONFOCAL	51	"AARSD1,AOC2,AOC3,ARL4D,ATP6V0A1,BECN1,BRCA1,CCR10,CNP,CNTD1,CNTNAP1,COA3,COASY,DHX58,DHX8,DNAJC7,EZH1,FAM134C,G6PC,GHDC,HCRT,HSD17B1,HSPB9,IFI35,KAT2A,KCNH4,MLX,NAGLU,NBR1,NKIRAS2,PLEKHH3,PSMC3IP,PSME3,PTGES3L,PTGES3L-AARSD1,PTRF,RAB5C,RAMP2,RND2,RPL27,RUNDC1,STAT3,STAT5A,STAT5B,TMEM106A,TUBG1,TUBG2,VAT1,VPS25,WNK4,ZNF385C"
TCGA.AG.3909.01A	17	40173541	40475536	90	-0.5729	SMALL-LOSS	NONFOCAL	12	"DHX58,GHDC,HCRT,HSPB9,KAT2A,KCNH4,NKIRAS2,RAB5C,STAT3,STAT5A,STAT5B,ZNF385C"
TCGA.A6.6652	17	40759936	41166416	53	-0.7975	SMALL-LOSS	NONFOCAL	23	"AARSD1,AOC2,AOC3,BECN1,CCR10,CNTD1,CNTNAP1,COA3,EZH1,FAM134C,G6PC,IFI35,PLEKHH3,PSME3,PTGES3L,PTGES3L-AARSD1,RAMP2,RPL27,RUNDC1,TUBG1,TUBG2,VPS25,WNK4"
TCGA.AG.3581	17	40870801	44162283	644	-0.5791	SMALL-LOSS	NONFOCAL	80	"AARSD1,ACBD4,ADAM11,AOC2,AOC3,ARHGAP27,ARL4D,ASB16,ATXN7L3,BECN1,BRCA1,C17orf104,C17orf105,C17orf53,C1QL1,CCDC103,CCDC43,CD300LG,CNTD1,COA3,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFTUD2,ETV4,EZH1,FAM171A2,FMNL1,FZD2,G6PC,G6PC3,GFAP,GJC1,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,IFI35,ITGA2B,KANSL1,KIF18B,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MPP2,MPP3,NAGS,NBR1,NMT1,PLCD3,PLEKHM1,PPY,PSME3,PTGES3L,PTGES3L-AARSD1,PYY,RAMP2,RND2,RPL27,RUNDC1,RUNDC3A,SLC25A39,SLC4A1,SOST,SPATA32,SPPL2C,STH,TMEM101,TMEM106A,TMUB2,UBTF,VAT1,VPS25,WNK4"
TCGA.AA.A02E.01A	17	41201078	66521848	2359	-0.6814	SMALL-LOSS	NONFOCAL	282	Too-Many
TCGA.AA.A01Z	17	41367400	46725148	1036	-0.8649	SMALL-LOSS	NONFOCAL	99	"ACBD4,ADAM11,ARHGAP27,ARL17A,ARL17B,ARL4D,ASB16,ATXN7L3,C17orf104,C17orf105,C17orf53,C1QL1,CBX1,CCDC103,CCDC43,CD300LG,CDC27,CDK5RAP3,COPZ2,CRHR1,DBF4B,DCAKD,DHX8,DUSP3,EFCAB13,EFTUD2,ETV4,FAM171A2,FMNL1,FZD2,G6PC3,GFAP,GJC1,GOSR2,GPATCH8,GRN,HDAC5,HEXIM1,HEXIM2,HIGD1B,HOXB1,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,ITGA2B,ITGB3,KANSL1,KIF18B,KPNB1,LRRC37A,LRRC37A2,LRRC46,LSM12,MAP3K14,MAPT,MEOX1,MGC57346-CRHR1,MPP2,MPP3,MRPL10,MYL4,NAGS,NFE2L1,NMT1,NPEPPS,NSF,OSBPL7,PLCD3,PLEKHM1,PNPO,PPY,PRR15L,PYY,RPRML,RUNDC3A,SCRN2,SKAP1,SLC25A39,SLC4A1,SNX11,SOST,SP2,SP6,SPATA32,SPPL2C,STH,TBKBP1,TBX21,TMEM101,TMEM106A,TMUB2,UBTF,WNT3,WNT9B"
TCGA.A6.6138	17	41415521	42223133	189	-0.542	SMALL-LOSS	NONFOCAL	18	"ARL4D,C17orf105,C17orf53,CD300LG,DHX8,DUSP3,ETV4,G6PC3,HDAC5,LSM12,MEOX1,MPP2,MPP3,NAGS,PPY,PYY,SOST,TMEM101"
TCGA.DT.5265	17	42854207	63050873	4787	-0.5527	SMALL-LOSS	NONFOCAL	226	Too-Many
TCGA.AG.A01L.01A	17	44770230	46020624	172	-0.5169	SMALL-LOSS	NONFOCAL	21	"ARL17A,CDC27,EFCAB13,GOSR2,ITGB3,KPNB1,LRRC46,MRPL10,MYL4,NPEPPS,NSF,OSBPL7,PNPO,RPRML,SCRN2,SP2,SP6,TBKBP1,TBX21,WNT3,WNT9B"
TCGA.AG.A01L.01A	17	46030312	47778750	172	-0.5431	SMALL-LOSS	NONFOCAL	36	"ABI3,ATP5G1,B4GALNT2,CALCOCO2,CBX1,CDK5RAP3,COPZ2,GIP,GNGT2,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,NFE2L1,NGFR,NXPH3,PHB,PHOSPHO1,PRAC1,PRAC2,PRR15L,SKAP1,SLC35B1,SNF8,SNX11,SPOP,TTLL6,UBE2Z,ZNF652"
TCGA.AA.A00N.01A	17	46507363	47123581	90	-0.5423	SMALL-LOSS	NONFOCAL	20	"ATP5G1,CALCOCO2,GIP,HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,IGF2BP1,PRAC1,PRAC2,SKAP1,SNF8,TTLL6,UBE2Z"
TCGA.AG.3909.01A	17	46606860	46805358	23	-1.1009	SMALL-LOSS	NONFOCAL	12	"HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,PRAC1,PRAC2"
TCGA.CK.5914.01A	17	46606860	46805358	24	-0.6594	SMALL-LOSS	NONFOCAL	12	"HOXB1,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,PRAC1,PRAC2"
TCGA.AG.3581	17	47241603	49230307	453	-0.5418	SMALL-LOSS	NONFOCAL	40	"ABCC3,ABI3,ACSF2,ANKRD40,B4GALNT2,CACNA1G,CHAD,COL1A1,DLX3,DLX4,EME1,EPN3,FAM117A,FLJ45513,GNGT2,ITGA3,KAT7,LRRC59,LUC7L3,MRPL27,MYCBPAP,NGFR,NXPH3,PDK2,PHB,PHOSPHO1,PPP1R9B,RSAD1,SAMD14,SGCA,SLC35B1,SPAG9,SPATA20,SPOP,TAC4,TMEM92,TOB1,WFIKKN2,XYLT2,ZNF652"
TCGA.EI.6508	17	50128123	81048658	8534	-0.8029	SMALL-LOSS	NONFOCAL	333	Too-Many
TCGA.AA.3968	17	53695844	55500063	779	-1.1682	SMALL-LOSS	NONFOCAL	11	"AKAP1,ANKFN1,C17orf67,COIL,DGKE,MSI2,NOG,PCTP,SCPEP1,TMEM100,TRIM25"
TCGA.EF.5830	17	54172276	55973983	761	-0.7378	SMALL-LOSS	NONFOCAL	12	"AKAP1,ANKFN1,C17orf67,CCDC182,COIL,CUEDC1,DGKE,MRPS23,MSI2,NOG,SCPEP1,TRIM25"
TCGA.AA.A00N.01A	17	54671564	56246996	96	-0.5189	SMALL-LOSS	NONFOCAL	15	"AKAP1,C17orf67,CCDC182,COIL,CUEDC1,DGKE,DYNLL2,MRPS23,MSI2,NOG,OR4D1,SCPEP1,SRSF1,TRIM25,VEZF1"
TCGA.SS.A7HO	17	55121067	56333886	475	-0.7985	SMALL-LOSS	NONFOCAL	13	"AKAP1,CCDC182,CUEDC1,DYNLL2,EPX,LPO,MKS1,MRPS23,MSI2,OR4D1,OR4D2,SRSF1,VEZF1"
TCGA.A6.3808.01A	17	56772262	58767003	252	-0.7353	SMALL-LOSS	NONFOCAL	22	"APPBP2,BCAS3,C17orf64,CA4,CLTC,DHX40,GDPD1,HEATR6,PPM1D,PPM1E,PRR11,PTRH2,RAD51C,RNFT1,RPS6KB1,SKA2,SMG8,TRIM37,TUBD1,USP32,VMP1,YPEL2"
TCGA.AA.A01Z	17	57919715	61614516	526	-0.8442	SMALL-LOSS	NONFOCAL	26	"ACE,APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,CYB561,EFCAB3,HEATR6,INTS2,KCNH6,MARCH10,MED13,METTL2A,MRC2,NACA2,PPM1D,RNFT1,RPS6KB1,TANC2,TBX2,TBX4,TLK2,TUBD1,USP32"
TCGA.D5.5540	17	58117428	60325221	344	-0.8106	SMALL-LOSS	NONFOCAL	14	"APPBP2,BCAS3,BRIP1,C17orf64,C17orf82,CA4,HEATR6,INTS2,MED13,NACA2,PPM1D,TBX2,TBX4,USP32"
TCGA.CM.6170	17	61583755	65219940	1020	-0.7065	SMALL-LOSS	NONFOCAL	39	"APOH,AXIN2,CACNG1,CACNG4,CACNG5,CCDC47,CD79B,CEP112,CEP95,CSH1,CSH2,CSHL1,DCAF7,DDX42,DDX5,ERN1,FTSJ3,GH1,GH2,GNA13,HELZ,ICAM2,KCNH6,LIMD2,LRRC37A3,MAP3K3,MILR1,PECAM1,POLG2,PRKCA,PRR29,PSMC5,RGS9,SCN4A,SMARCD2,SMURF2,STRADA,TACO1,TEX2"
TCGA.DT.5265	17	64269031	76789990	4080	-0.5224	SMALL-LOSS	NONFOCAL	135	Too-Many
TCGA.AF.A56L	17	66352579	72172135	2259	-0.5267	SMALL-LOSS	NONFOCAL	22	"ABCA10,ABCA5,ABCA6,ABCA8,ABCA9,ARSG,C17orf80,CDC42EP4,COG1,CPSF4L,FAM104A,FAM20A,KCNJ16,KCNJ2,LOC100134391,MAP2K6,PRKAR1A,SDK2,SLC39A11,SOX9,SSTR2,WIPI1"
TCGA.AA.A02E.01A	17	67181571	72888599	240	-0.6102	SMALL-LOSS	NONFOCAL	36	"ABCA10,ABCA5,BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,COG1,CPSF4L,DNAI2,FADS6,FAM104A,FDXR,GPR142,GPRC5C,GRIN2C,KCNJ16,KCNJ2,KIF19,LOC100134391,MAP2K6,NAT9,RAB37,RPL38,SDK2,SLC39A11,SLC9A3R1,SOX9,SSTR2,TMEM104,TTYH2"
TCGA.NH.A6GA	17	68153618	74097330	2075	-0.7156	SMALL-LOSS	NONFOCAL	77	"ACOX1,ARMC7,ATP5H,BTBD17,C17orf77,C17orf80,CASKIN2,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CDK3,CDR2L,COG1,CPSF4L,DNAI2,EVPL,EXOC7,FADS6,FAM104A,FBF1,FDXR,GALK1,GALR2,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,H3F3B,HID1,HN1,ICT1,ITGB4,KCNJ2,KCTD2,KIAA0195,KIF19,LLGL2,LOC100134391,MIF4GD,MRPL38,MRPS7,NAT9,NT5C,NUP85,OTOP2,OTOP3,RAB37,RECQL5,RPL38,SAP30BP,SDK2,SLC16A5,SLC25A19,SLC39A11,SLC9A3R1,SMIM5,SMIM6,SOX9,SRP68,SSTR2,SUMO2,TEN1,TMEM104,TRIM47,TRIM65,TSEN54,TTYH2,UNC13D,UNK,USH1G,WBP2,ZACN"
TCGA.A6.2684	17	69076163	81048658	3215	-0.7013	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.DM.A1DB	17	69598642	75599159	1918	-0.7178	SMALL-LOSS	NONFOCAL	97	"AANAT,ACOX1,ARMC7,ATP5H,BTBD17,C17orf77,C17orf80,CASKIN2,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CDK3,CDR2L,COG1,CPSF4L,CYGB,DNAI2,EVPL,EXOC7,FADS6,FAM104A,FBF1,FDXR,FOXJ1,GALK1,GALR2,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,H3F3B,HID1,HN1,ICT1,ITGB4,JMJD6,KCTD2,KIAA0195,KIF19,LLGL2,LOC100134391,METTL23,MFSD11,MGAT5B,MIF4GD,MRPL38,MRPS7,MXRA7,NAT9,NT5C,NUP85,OTOP2,OTOP3,PRCD,PRPSAP1,QRICH2,RAB37,RECQL5,RHBDF2,RNF157,RPL38,SAP30BP,SDK2,SEC14L1,SEPT9,SLC16A5,SLC25A19,SLC39A11,SLC9A3R1,SMIM5,SMIM6,SOX9,SPHK1,SRP68,SRSF2,SSTR2,ST6GALNAC1,ST6GALNAC2,SUMO2,TEN1,TMEM104,TRIM47,TRIM65,TSEN54,TTYH2,UBALD2,UBE2O,UNC13D,UNK,USH1G,WBP2,ZACN"
TCGA.A6.2672	17	70485721	81048658	2825	-0.731	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.A6.5665	17	70486681	81048658	2823	-0.6967	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AA.A01Z	17	70490887	73751097	1056	-0.877	SMALL-LOSS	NONFOCAL	58	"ARMC7,ATP5H,BTBD17,C17orf77,C17orf80,CASKIN2,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CDR2L,COG1,CPSF4L,DNAI2,FADS6,FAM104A,FDXR,GGA3,GPR142,GPRC5C,GRB2,GRIN2C,HID1,HN1,ICT1,ITGB4,KCTD2,KIAA0195,KIF19,LLGL2,LOC100134391,MIF4GD,MRPS7,NAT9,NT5C,NUP85,OTOP2,OTOP3,RAB37,RECQL5,RPL38,SAP30BP,SDK2,SLC16A5,SLC25A19,SLC39A11,SLC9A3R1,SMIM5,SMIM6,SSTR2,SUMO2,TMEM104,TSEN54,TTYH2,USH1G"
TCGA.A6.5661	17	70735619	81048658	2713	-0.9068	SMALL-LOSS	NONFOCAL	197	Too-Many
TCGA.AA.3862.01A	17	71205617	72832028	177	-0.5868	SMALL-LOSS	NONFOCAL	24	"BTBD17,C17orf77,C17orf80,CD300A,CD300C,CD300E,CD300LB,CD300LD,CD300LF,CDC42EP4,CPSF4L,DNAI2,FAM104A,GPR142,GPRC5C,KIF19,LOC100134391,NAT9,RAB37,RPL38,SDK2,SLC9A3R1,TMEM104,TTYH2"
TCGA.AG.3725	17	72154232	81048658	2112	-0.6229	SMALL-LOSS	NONFOCAL	188	Too-Many
TCGA.AA.A00N.01A	17	72736900	73008760	93	-0.5901	SMALL-LOSS	NONFOCAL	13	"CDR2L,FADS6,FDXR,GRIN2C,HID1,ICT1,NAT9,OTOP2,OTOP3,RAB37,SLC9A3R1,TMEM104,USH1G"
TCGA.AA.A01Q.01A	17	72736900	73101923	102	-0.6863	SMALL-LOSS	NONFOCAL	16	"ATP5H,CDR2L,FADS6,FDXR,GRIN2C,HID1,ICT1,KCTD2,NAT9,OTOP2,OTOP3,RAB37,SLC16A5,SLC9A3R1,TMEM104,USH1G"
TCGA.CK.5914.01A	17	72767811	73008760	80	-0.5178	SMALL-LOSS	NONFOCAL	11	"CDR2L,FADS6,FDXR,GRIN2C,HID1,ICT1,NAT9,OTOP2,OTOP3,TMEM104,USH1G"
TCGA.A6.3808.01A	17	72791635	76567635	799	-0.5259	SMALL-LOSS	NONFOCAL	82	"AANAT,ACOX1,AFMID,ARMC7,ATP5H,BIRC5,C17orf99,CASKIN2,CDK3,CDR2L,CYGB,DNAH17,EVPL,EXOC7,FADS6,FBF1,FDXR,FOXJ1,GALK1,GALR2,GGA3,GRB2,GRIN2C,H3F3B,HID1,HN1,ICT1,ITGB4,JMJD6,KCTD2,KIAA0195,LLGL2,METTL23,MFSD11,MGAT5B,MIF4GD,MRPL38,MRPS7,MXRA7,NT5C,NUP85,OTOP2,OTOP3,PGS1,PRCD,PRPSAP1,QRICH2,RECQL5,RHBDF2,RNF157,SAP30BP,SEC14L1,SEPT9,SLC16A5,SLC25A19,SMIM5,SMIM6,SOCS3,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SUMO2,SYNGR2,TEN1,TK1,TMC6,TMC8,TMEM104,TMEM235,TNRC6C,TRIM47,TRIM65,TSEN54,UBALD2,UBE2O,UNC13D,UNK,USH1G,WBP2,ZACN"
TCGA.AG.3909.01A	17	72914073	73208023	64	-0.6331	SMALL-LOSS	NONFOCAL	14	"ARMC7,ATP5H,CDR2L,HID1,HN1,ICT1,KCTD2,NT5C,NUP85,OTOP2,OTOP3,SLC16A5,SUMO2,USH1G"
TCGA.AA.A02E.01A	17	72915551	81006295	900	-0.9661	SMALL-LOSS	NONFOCAL	166	Too-Many
TCGA.CK.5914.01A	17	73059026	73647202	147	-0.6083	SMALL-LOSS	NONFOCAL	19	"ARMC7,CASKIN2,GGA3,GRB2,HN1,KCTD2,KIAA0195,LLGL2,MIF4GD,MRPS7,NT5C,NUP85,RECQL5,SLC16A5,SLC25A19,SMIM5,SMIM6,SUMO2,TSEN54"
TCGA.CK.5914.01A	17	73689440	74014190	146	-0.5402	SMALL-LOSS	NONFOCAL	15	"ACOX1,CDK3,EVPL,FBF1,GALK1,H3F3B,ITGB4,MRPL38,SAP30BP,TEN1,TRIM47,TRIM65,UNC13D,UNK,WBP2"
TCGA.AG.3581	17	73847612	78272813	1262	-0.6866	SMALL-LOSS	NONFOCAL	67	"AANAT,ACOX1,AFMID,BIRC5,C17orf99,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC40,CDK3,CEP295NL,CYGB,CYTH1,DNAH17,EIF4A3,ENGASE,ENPP7,EVPL,EXOC7,FBF1,FOXJ1,GAA,GALR2,JMJD6,LGALS3BP,METTL23,MFSD11,MGAT5B,MRPL38,MXRA7,PGS1,PRCD,PRPSAP1,QRICH2,RBFOX3,RHBDF2,RNF157,RNF213,SEC14L1,SEPT9,SGSH,SLC26A11,SOCS3,SPHK1,SRP68,SRSF2,ST6GALNAC1,ST6GALNAC2,SYNGR2,TBC1D16,TEN1,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,TRIM47,TRIM65,UBALD2,UBE2O,USP36,WBP2,ZACN"
TCGA.CK.5914.01A	17	74750108	81051974	1014	-0.5579	SMALL-LOSS	NONFOCAL	105	Too-Many
TCGA.AA.A01Z	17	76093676	79029015	836	-0.8856	SMALL-LOSS	NONFOCAL	38	"AFMID,BAIAP2,BIRC5,C17orf99,C1QTNF1,CANT1,CARD14,CBX2,CBX4,CBX8,CCDC40,CEP295NL,CHMP6,CYTH1,DNAH17,EIF4A3,ENDOV,ENGASE,ENPP7,GAA,LGALS3BP,NPTX1,PGS1,RBFOX3,RNF213,RPTOR,SGSH,SLC26A11,SOCS3,SYNGR2,TBC1D16,TIMP2,TK1,TMC6,TMC8,TMEM235,TNRC6C,USP36"
TCGA.A6.3808.01A	17	77073469	78190814	123	-0.7787	SMALL-LOSS	NONFOCAL	12	"CARD14,CBX2,CBX4,CBX8,CCDC40,EIF4A3,ENGASE,ENPP7,GAA,RBFOX3,SGSH,TBC1D16"
TCGA.AA.3862.01A	17	78071033	81050855	523	-0.5524	SMALL-LOSS	NONFOCAL	75	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,B3GNTL1,BAHCC1,BAIAP2,C17orf62,C17orf70,C17orf89,CARD14,CCDC137,CCDC40,CCDC57,CD7,CEP131,CHMP6,CSNK1D,DCXR,DUS1L,EIF4A3,ENDOV,ENTHD2,FAM195B,FASN,FN3K,FN3KRP,FOXK2,FSCN2,GAA,GCGR,GPS1,HEXDC,HGS,LOC100130370,LRRC45,MAFG,METRNL,MRPL12,MYADML2,NARF,NOTUM,NPB,NPLOC4,NPTX1,OGFOD3,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,RNF213,RPTOR,SECTM1,SGSH,SIRT7,SLC16A3,SLC25A10,SLC26A11,SLC38A10,STRA13,TBCD,TEX19,TMEM105,TSPAN10,UTS2R,WDR45B,ZNF750"
TCGA.AA.A00N.01A	17	78765183	80115557	363	-0.543	SMALL-LOSS	NONFOCAL	47	"AATK,ACTG1,ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,BAHCC1,BAIAP2,C17orf70,C17orf89,CCDC137,CCDC57,CEP131,CHMP6,DCXR,DUS1L,ENTHD2,FAM195B,FASN,FSCN2,GCGR,GPS1,HGS,LOC100130370,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,RFNG,RPTOR,SIRT7,SLC25A10,SLC38A10,STRA13,TMEM105,TSPAN10"
TCGA.AF.3914.01A	17	79538980	80159469	139	-0.6709	SMALL-LOSS	NONFOCAL	33	"ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,CCDC137,CCDC57,DCXR,DUS1L,FAM195B,FASN,GCGR,GPS1,HGS,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,NPLOC4,OXLD1,P4HB,PCYT2,PDE6G,PPP1R27,PYCR1,RAC3,RFNG,SIRT7,SLC25A10,STRA13,TSPAN10"
TCGA.A6.3808.01A	17	79634710	79982097	108	-1.2339	SMALL-LOSS	NONFOCAL	22	"ALYREF,ANAPC11,ARHGDIA,ARL16,ASPSCR1,CCDC137,FAM195B,GCGR,HGS,LRRC45,MAFG,MRPL12,MYADML2,NOTUM,NPB,P4HB,PCYT2,PPP1R27,PYCR1,SIRT7,SLC25A10,STRA13"
TCGA.AA.A01Q.01A	17	79652579	79871927	55	-0.7408	SMALL-LOSS	NONFOCAL	13	"ALYREF,ANAPC11,ARHGDIA,FAM195B,GCGR,HGS,MRPL12,NPB,P4HB,PCYT2,PPP1R27,SIRT7,SLC25A10"
TCGA.AA.3861.01A	17	79682526	81050855	220	-0.7177	SMALL-LOSS	NONFOCAL	44	"ALYREF,ANAPC11,ARHGDIA,ASPSCR1,B3GNTL1,C17orf62,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FAM195B,FASN,FN3K,FN3KRP,FOXK2,GCGR,GPS1,HEXDC,LRRC45,MAFG,METRNL,MYADML2,NARF,NOTUM,NPB,OGFOD3,P4HB,PCYT2,PPP1R27,PYCR1,RAB40B,RAC3,RFNG,SECTM1,SIRT7,SLC16A3,SLC25A10,STRA13,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AG.4009.01A	17	79812971	79943332	25	-0.8689	SMALL-LOSS	NONFOCAL	12	"ALYREF,ANAPC11,ARHGDIA,ASPSCR1,MAFG,MYADML2,NOTUM,NPB,P4HB,PCYT2,PYCR1,SIRT7"
TCGA.AG.A026	17	79943474	81048658	196	-0.7419	SMALL-LOSS	NONFOCAL	29	"ASPSCR1,B3GNTL1,C17orf62,CCDC57,CD7,CSNK1D,DCXR,DUS1L,FASN,FN3K,FN3KRP,FOXK2,GPS1,HEXDC,LRRC45,METRNL,NARF,OGFOD3,RAB40B,RAC3,RFNG,SECTM1,SLC16A3,STRA13,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A00N.01A	17	80121028	80828048	126	-0.89	SMALL-LOSS	NONFOCAL	18	"C17orf62,CCDC57,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,NARF,OGFOD3,RAB40B,SECTM1,SLC16A3,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A01Q.01A	17	80202612	80879329	88	-0.553	SMALL-LOSS	NONFOCAL	16	"C17orf62,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,NARF,OGFOD3,RAB40B,SECTM1,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AG.3909.01A	17	80209207	81051974	120	-0.7283	SMALL-LOSS	NONFOCAL	18	"B3GNTL1,C17orf62,CD7,CSNK1D,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,SECTM1,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AA.A01Z	17	80294108	80865118	104	-0.9782	SMALL-LOSS	NONFOCAL	13	"C17orf62,FN3K,FN3KRP,FOXK2,HEXDC,NARF,OGFOD3,RAB40B,TBCD,TEX19,UTS2R,WDR45B,ZNF750"
TCGA.AG.3581	17	80374898	81048658	150	-0.6788	SMALL-LOSS	NONFOCAL	13	"B3GNTL1,C17orf62,FN3K,FN3KRP,FOXK2,HEXDC,METRNL,NARF,OGFOD3,RAB40B,TBCD,WDR45B,ZNF750"
TCGA.DC.6157	18	100948	3597524	1344	-0.9345	SMALL-LOSS	NONFOCAL	20	"ADCYAP1,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.3870	18	100948	3956216	1489	-0.5222	SMALL-LOSS	NONFOCAL	20	"ADCYAP1,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.D5.6533	18	100948	4426359	1743	-0.6814	SMALL-LOSS	NONFOCAL	20	"ADCYAP1,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.DC.6154	18	100948	5352985	2069	-0.6764	SMALL-LOSS	NONFOCAL	22	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AG.3584	18	100948	5966349	2332	-0.5857	SMALL-LOSS	NONFOCAL	25	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.NH.A50V	18	100948	5989847	2344	-0.5877	SMALL-LOSS	NONFOCAL	25	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.D5.6532	18	100948	6412606	2505	-0.786	SMALL-LOSS	NONFOCAL	25	"ADCYAP1,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.A6.5662	18	100948	7062062	2815	-0.9749	SMALL-LOSS	NONFOCAL	27	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AG.3728	18	100948	7339603	2925	-0.7306	SMALL-LOSS	NONFOCAL	28	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.DC.4745	18	100948	8553981	3467	-0.8949	SMALL-LOSS	NONFOCAL	29	"ADCYAP1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MYL12A,MYL12B,MYOM1,NDC80,PTPRM,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.SS.A7HO	18	100948	9998093	4085	-0.8237	SMALL-LOSS	NONFOCAL	39	"ADCYAP1,ANKRD12,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NDC80,NDUFV2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AA.3679	18	100948	12663151	5129	-0.7522	SMALL-LOSS	NONFOCAL	54	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPRM,RAB12,RAB31,RALBP1,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AG.3598	18	100948	13436564	5325	-1.0235	SMALL-LOSS	NONFOCAL	59	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.CM.6679	18	100948	13584399	5409	-0.68215	SMALL-LOSS	NONFOCAL	59	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.QG.A5YX	18	100948	13777077	5441	-1.0982	SMALL-LOSS	NONFOCAL	61	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.DM.A1DB	18	100948	13799455	5484	-0.742	SMALL-LOSS	NONFOCAL	61	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.A6.2675	18	100948	15070856	5679	-0.7397	SMALL-LOSS	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.A6.6652	18	100948	15157835	5721	-0.8118	SMALL-LOSS	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AZ.4681	18	100948	15182453	5722	-0.8386	SMALL-LOSS	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.5M.AATE	18	100948	15215870	5726	-0.5705	SMALL-LOSS	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.AZ.4614	18	100948	15215870	5653	-0.8305	SMALL-LOSS	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.F4.6808	18	100948	15215870	5718	-0.676	SMALL-LOSS	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.NH.A50U	18	100948	15215870	5724	-1.3055	SMALL-LOSS	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.4T.AA8H	18	100948	20053367	5979	-0.5379	SMALL-LOSS	NONFOCAL	74	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.4N.A93T	18	100948	21103908	6234	-0.8287	SMALL-LOSS	NONFOCAL	79	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.DM.A28H	18	100948	22492364	6771	-0.625	SMALL-LOSS	NONFOCAL	87	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.EI.6881	18	100948	23550728	7150	-0.5749	SMALL-LOSS	NONFOCAL	88	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.AD.6965	18	100948	26187549	7943	-0.6711	SMALL-LOSS	NONFOCAL	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.CM.6677	18	100948	28317864	8549	-0.6203	SMALL-LOSS	NONFOCAL	95	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CDH2,CEP192,CEP76,CETN1,CHMP1B,CHST9,CIDEA,CLUL1,COLEC12,CTAGE1,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,THOC1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519,ZNF521"
TCGA.EI.6513	18	100948	34046176	10270	-0.8267	SMALL-LOSS	NONFOCAL	128	Too-Many
TCGA.QL.A97D	18	100948	36025169	10917	-0.5523	SMALL-LOSS	NONFOCAL	131	Too-Many
TCGA.AA.3693	18	100948	36998049	11231	-0.8547	SMALL-LOSS	NONFOCAL	131	Too-Many
TCGA.AY.5543	18	100948	37012707	11130	-0.6098	SMALL-LOSS	NONFOCAL	131	Too-Many
TCGA.AZ.4308	18	100948	37035750	11212	-0.6432	SMALL-LOSS	NONFOCAL	131	Too-Many
TCGA.EF.5830	18	100948	38705043	11686	-0.7598	SMALL-LOSS	NONFOCAL	131	Too-Many
TCGA.5M.AAT4	18	100948	40381038	12251	-0.5211	SMALL-LOSS	NONFOCAL	133	Too-Many
TCGA.AG.3893	18	100948	47960552	14758	-0.5621	SMALL-LOSS	NONFOCAL	170	Too-Many
TCGA.EI.6509	18	100948	48177859	14988	-0.7921	SMALL-LOSS	NONFOCAL	171	Too-Many
TCGA.AG.3592	18	100948	48364913	15076	-0.5176	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.D5.6932	18	100948	48374458	15040	-0.64	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.AD.A5EK	18	100948	48422898	15002	-0.9023	SMALL-LOSS	NONFOCAL	173	Too-Many
TCGA.AA.3560	18	100948	48495480	15109	-0.7513	SMALL-LOSS	NONFOCAL	174	Too-Many
TCGA.AG.4021	18	100948	61252095	19557	-0.7642	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.CM.5864	18	100948	65256093	20800	-0.7397	SMALL-LOSS	NONFOCAL	231	Too-Many
TCGA.AF.A56L	18	100948	65290713	20813	-0.5418	SMALL-LOSS	NONFOCAL	231	Too-Many
TCGA.NH.A8F8	18	100948	65290713	20870	-0.6022	SMALL-LOSS	NONFOCAL	231	Too-Many
TCGA.AA.3530	18	100948	66711572	21416	-0.8597	SMALL-LOSS	NONFOCAL	233	Too-Many
TCGA.AA.3660	18	100948	66739133	21459	-0.6655	SMALL-LOSS	NONFOCAL	233	Too-Many
TCGA.AA.3971	18	100948	70956778	23073	-0.5164	SMALL-LOSS	NONFOCAL	240	Too-Many
TCGA.QG.A5YV	18	100948	73657194	24221	-0.8604	SMALL-LOSS	NONFOCAL	251	Too-Many
TCGA.AA.3531	18	100948	73965824	24573	-0.8425	SMALL-LOSS	NONFOCAL	251	Too-Many
TCGA.5M.AAT5	18	100948	78015056	26018	-0.7788	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.2671	18	100948	78015056	25981	-0.6944	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.2677	18	100948	78015056	23837	-0.8639	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.2683	18	100948	78015056	25997	-0.8361	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.2684	18	100948	78015056	23831	-0.6065	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.5656	18	100948	78015056	25916	-0.7513	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.5659	18	100948	78015056	23818	-0.6449	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.5660	18	100948	78015056	25918	-0.5345	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.5666	18	100948	78015056	25989	-0.9141	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.6140	18	100948	78015056	26024	-0.7236	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.A6.6782	18	100948	78015056	25928	-0.5649	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3496	18	100948	78015056	25918	-0.7061	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3511	18	100948	78015056	25955	-0.5256	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3517	18	100948	78015056	25999	-0.8052	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3519	18	100948	78015056	26019	-0.8154	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3526	18	100948	78015056	26017	-0.6465	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3544	18	100948	78015056	26036	-0.7499	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3548	18	100948	78015056	26031	-0.7076	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3667	18	100948	78015056	26038	-0.825	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3673	18	100948	78015056	26043	-0.6441	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3688	18	100948	78015056	26040	-0.8068	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3692	18	100948	78015056	26039	-0.7214	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3819	18	100948	78015056	26041	-0.6485	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3841	18	100948	78015056	26039	-0.5562	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3848	18	100948	78015056	26039	-0.7825	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3860	18	100948	78015056	26036	-0.6692	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3866	18	100948	78015056	26013	-0.5559	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3867	18	100948	78015056	26005	-0.5758	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3955	18	100948	78015056	26011	-0.5252	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3956	18	100948	78015056	26010	-0.523	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3972	18	100948	78015056	26019	-0.8956	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3973	18	100948	78015056	26015	-0.9953	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3975	18	100948	78015056	25999	-0.8105	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3979	18	100948	78015056	25946	-1.049	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.3989	18	100948	78015056	26016	-0.6751	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.A01T	18	100948	78015056	25997	-0.7023	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AD.6899	18	100948	78015056	25947	-0.5903	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AF.3913	18	100948	78015056	25920	-0.7115	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AF.6655	18	100948	78015056	25957	-0.533	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AF.A56N	18	100948	78015056	25963	-0.7753	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3574	18	100948	78015056	26031	-0.9883	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3581	18	100948	78015056	26029	-0.5966	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3583	18	100948	78015056	25339	-0.7315	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3602	18	100948	78015056	25920	-0.743	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3612	18	100948	78015056	25893	-1.0335	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3726	18	100948	78015056	26024	-0.7152	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3732	18	100948	78015056	25939	-0.557	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3742	18	100948	78015056	25855	-0.6739	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3887	18	100948	78015056	25901	-0.7489	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3896	18	100948	78015056	25945	-0.5504	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.3898	18	100948	78015056	25918	-0.6017	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.4022	18	100948	78015056	26031	-0.5768	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.A020	18	100948	78015056	25987	-0.8653	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AY.A69D	18	100948	78015056	26013	-0.7841	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AZ.4682	18	100948	78015056	25997	-0.7609	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AZ.6603	18	100948	78015056	25963	-0.6603	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AZ.6608	18	100948	78015056	25937	-0.5791	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CA.6715	18	100948	78015056	25909	-0.8908	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CI.6622	18	100948	78015056	25978	-0.6094	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CK.5912	18	100948	78015056	25917	-0.833	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CL.5917	18	100948	78015056	25943	-0.7223	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CL.5918	18	100948	78015056	25953	-0.6599	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CM.5341	18	100948	78015056	25999	-0.5601	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CM.6163	18	100948	78015056	25924	-0.7432	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CM.6169	18	100948	78015056	25864	-0.526	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CM.6170	18	100948	78015056	26009	-0.6773	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CM.6172	18	100948	78015056	26018	-0.6902	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.CM.6680	18	100948	78015056	25965	-0.6835	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.D5.5537	18	100948	78015056	25947	-1.0119	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.D5.5538	18	100948	78015056	25996	-0.5628	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.D5.5541	18	100948	78015056	26015	-0.7908	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.D5.6538	18	100948	78015056	26021	-0.5976	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.D5.6923	18	100948	78015056	25950	-0.5392	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DC.5869	18	100948	78015056	25958	-0.6809	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DM.A0XF	18	100948	78015056	26011	-0.541	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DM.A1D0	18	100948	78015056	25884	-0.8213	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DM.A1D8	18	100948	78015056	25989	-0.5918	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DM.A1D9	18	100948	78015056	26001	-0.7543	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DM.A28A	18	100948	78015056	25969	-0.7924	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DM.A28E	18	100948	78015056	25958	-0.9538	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DY.A0XA	18	100948	78015056	25998	-0.7306	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DY.A1DC	18	100948	78015056	25926	-0.6548	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DY.A1DD	18	100948	78015056	26018	-0.8651	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.EI.6511	18	100948	78015056	26017	-0.5558	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.EI.6514	18	100948	78015056	25988	-0.5274	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.EI.6883	18	100948	78015056	25960	-0.6517	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.F4.6460	18	100948	78015056	26024	-0.835	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.F4.6854	18	100948	78015056	25949	-0.5433	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.F5.6571	18	100948	78015056	25976	-0.6695	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.F5.6813	18	100948	78015056	25987	-0.5416	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.F5.6863	18	100948	78015056	25960	-0.7252	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.F5.6864	18	100948	78015056	25959	-0.5638	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.G4.6294	18	100948	78015056	26025	-0.731	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.G4.6317	18	100948	78015056	26032	-0.7861	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.NH.A8F7	18	100948	78015056	25937	-0.5753	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.QG.A5Z1	18	100948	78015056	25819	-0.8425	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.RU.A8FL	18	100948	78015056	26013	-0.5265	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.T9.A92H	18	100948	78015056	26022	-0.7447	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.A036.01A	18	153277	14841503	766	-0.7041	SMALL-LOSS	NONFOCAL	66	"ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.CM.4750.01A	18	158610	78005105	2853	-0.5252	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DM.A282.01A	18	163296	2722509	125	-0.6165	SMALL-LOSS	NONFOCAL	13	"ADCYAP1,CETN1,CLUL1,COLEC12,ENOSF1,METTL4,NDC80,SMCHD1,THOC1,TYMS,TYMSOS,USP14,YES1"
TCGA.AA.3509.01A	18	163296	9182378	424	-0.6394	SMALL-LOSS	NONFOCAL	33	"ADCYAP1,ANKRD12,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NDC80,NDUFV2,PTPRM,RAB12,SMCHD1,TGIF1,THOC1,TMEM200C,TYMS,TYMSOS,USP14,YES1,ZBTB14"
TCGA.AG.A014.01A	18	163296	10487545	472	-0.5676	SMALL-LOSS	NONFOCAL	40	"ADCYAP1,ANKRD12,APCDD1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NDC80,NDUFV2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.CK.5914.01A	18	163296	10697671	512	-0.5368	SMALL-LOSS	NONFOCAL	42	"ADCYAP1,ANKRD12,APCDD1,ARHGAP28,C18orf42,CETN1,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SMCHD1,TGIF1,THOC1,TMEM200C,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AG.3906.01A	18	163296	12963142	586	-0.5957	SMALL-LOSS	NONFOCAL	57	"ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14"
TCGA.AG.A008.01A	18	163296	19444460	755	-0.6852	SMALL-LOSS	NONFOCAL	72	"ABHD3,ADCYAP1,AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,ESCO1,FAM210A,GNAL,GREB1L,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,TGIF1,THOC1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,TYMSOS,USP14,VAPA,YES1,ZBTB14,ZNF519"
TCGA.CM.6165.01A	18	163296	44497210	1804	-0.5546	SMALL-LOSS	NONFOCAL	147	Too-Many
TCGA.AA.3939.01A	18	163296	55276546	2162	-0.5618	SMALL-LOSS	NONFOCAL	192	Too-Many
TCGA.AA.A02F.01A	18	163296	77960563	2558	-0.6974	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AA.A02J.01A	18	163296	77960563	2574	-0.6722	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AG.A01N.01A	18	163296	77960563	2613	-0.5474	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.DM.A28M.01A	18	163296	78005105	2838	-0.5271	SMALL-LOSS	NONFOCAL	267	Too-Many
TCGA.AD.6901	18	1009952	5587040	1780	-0.724	SMALL-LOSS	NONFOCAL	13	"C18orf42,DLGAP1,EMILIN2,EPB41L3,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,ZBTB14"
TCGA.DM.A28F	18	1165852	15182453	5293	-0.6107	SMALL-LOSS	NONFOCAL	56	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,C18orf42,CEP192,CEP76,CHMP1B,CIDEA,DLGAP1,EMILIN2,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SMCHD1,SPIRE1,TGIF1,TMEM200C,TUBB6,TWSG1,TXNDC2,VAPA,ZBTB14,ZNF519"
TCGA.AA.3561	18	1444995	5963762	1835	-0.8674	SMALL-LOSS	NONFOCAL	15	"C18orf42,DLGAP1,EMILIN2,EPB41L3,L3MBTL4,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,TMEM200C,ZBTB14"
TCGA.AA.3844	18	2483910	24858577	6632	-0.8838	SMALL-LOSS	NONFOCAL	84	"ABHD3,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,C18orf42,C18orf8,CABLES1,CABYR,CEP192,CEP76,CHMP1B,CHST9,CIDEA,CTAGE1,DLGAP1,EMILIN2,EPB41L3,ESCO1,FAM210A,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SMCHD1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,TMEM200C,TMEM241,TTC39C,TUBB6,TWSG1,TXNDC2,VAPA,ZBTB14,ZNF519,ZNF521"
TCGA.A6.2678	18	2485797	78015056	25062	-0.8192	SMALL-LOSS	NONFOCAL	257	Too-Many
TCGA.AG.A016.01A	18	2544600	5293154	146	-0.8397	SMALL-LOSS	NONFOCAL	12	"C18orf42,DLGAP1,EMILIN2,LPIN2,METTL4,MYL12A,MYL12B,MYOM1,NDC80,SMCHD1,TGIF1,ZBTB14"
TCGA.DM.A282.01A	18	2729226	44497210	1670	-0.6472	SMALL-LOSS	NONFOCAL	135	Too-Many
TCGA.A6.A567	18	2747976	78015056	24804	-0.7539	SMALL-LOSS	NONFOCAL	255	Too-Many
TCGA.AG.A01L.01A	18	2920254	31250590	1110	-0.5299	SMALL-LOSS	NONFOCAL	99	"ABHD3,AFG3L2,ANKRD12,ANKRD29,ANKRD30B,ANKRD62,APCDD1,AQP4,ARHGAP28,ASXL3,B4GALT6,C18orf42,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CEP192,CEP76,CHMP1B,CHST9,CIDEA,CTAGE1,DLGAP1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,EPB41L3,ESCO1,FAM210A,GAREM,GATA6,GNAL,GREB1L,HRH4,IMPA2,IMPACT,KCTD1,KLHL14,L3MBTL4,LAMA1,LAMA3,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,MEP1B,MIB1,MPPE1,MTCL1,MYL12A,MYL12B,MYOM1,NAPG,NDUFV2,NPC1,OSBPL1A,PIEZO2,POTEC,PPP4R1,PSMA8,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RBBP8,RIOK3,RNF125,RNF138,RNMT,ROCK1,SEH1L,SLC25A52,SLC35G4,SLMO1,SNRPD1,SPIRE1,SS18,TAF4B,TGIF1,TMEM200C,TMEM241,TRAPPC8,TTC39C,TTR,TUBB6,TWSG1,TXNDC2,VAPA,ZBTB14,ZNF519,ZNF521"
TCGA.AA.A00Z.01A	18	3879132	65180726	33	-0.6077	SMALL-LOSS	NONFOCAL	212	Too-Many
TCGA.D5.6533	18	4483452	78015056	24129	-0.7433	SMALL-LOSS	NONFOCAL	247	Too-Many
TCGA.AG.A016.01A	18	5488973	10696020	241	-0.8484	SMALL-LOSS	NONFOCAL	20	"ANKRD12,APCDD1,ARHGAP28,EPB41L3,L3MBTL4,LAMA1,LRRC30,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,TMEM200C,TWSG1,TXNDC2,VAPA"
TCGA.AD.6548	18	5521933	9543987	1725	-0.5452	SMALL-LOSS	NONFOCAL	13	"ANKRD12,ARHGAP28,EPB41L3,L3MBTL4,LAMA1,LRRC30,MTCL1,NDUFV2,PTPRM,RAB12,RALBP1,TMEM200C,TWSG1"
TCGA.DM.A1D4	18	5901788	18560353	3448	-0.8127	SMALL-LOSS	NONFOCAL	43	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,ARHGAP28,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LRRC30,MC2R,MC5R,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AA.3561	18	5970703	51201890	13758	-0.9843	SMALL-LOSS	NONFOCAL	153	Too-Many
TCGA.AG.3584	18	5978506	11114933	2328	-0.7168	SMALL-LOSS	NONFOCAL	18	"ANKRD12,APCDD1,ARHGAP28,L3MBTL4,LAMA1,LRRC30,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.AG.3575	18	6274884	67208391	19196	-0.7213	SMALL-LOSS	NONFOCAL	210	Too-Many
TCGA.D5.6532	18	6457226	78015056	23491	-0.8355	SMALL-LOSS	NONFOCAL	242	Too-Many
TCGA.AD.6901	18	7080663	15157835	2880	-0.8126	SMALL-LOSS	NONFOCAL	40	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LAMA1,LDLRAD4,LRRC30,MC2R,MC5R,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AU.3779	18	7122323	13372138	2450	-0.9254	SMALL-LOSS	NONFOCAL	32	"AFG3L2,ANKRD12,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,GNAL,IMPA2,LDLRAD4,LRRC30,MPPE1,MTCL1,NAPG,NDUFV2,PIEZO2,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA"
TCGA.DC.4745	18	8556125	78015056	22564	-0.8821	SMALL-LOSS	NONFOCAL	238	Too-Many
TCGA.DC.6154	18	8981068	78015056	22260	-0.7265	SMALL-LOSS	NONFOCAL	236	Too-Many
TCGA.AG.A02X.01A	18	9104119	10697671	91	-1.0516	SMALL-LOSS	NONFOCAL	11	"ANKRD12,APCDD1,NAPG,NDUFV2,PIEZO2,PPP4R1,RAB31,RALBP1,TWSG1,TXNDC2,VAPA"
TCGA.AG.A00C.01A	18	9182378	12028802	108	-0.5934	SMALL-LOSS	NONFOCAL	15	"ANKRD12,APCDD1,CHMP1B,GNAL,IMPA2,MPPE1,NAPG,PIEZO2,PPP4R1,RAB31,RALBP1,SLC35G4,TWSG1,TXNDC2,VAPA"
TCGA.AA.3509.01A	18	9263751	14842810	292	-0.8117	SMALL-LOSS	NONFOCAL	34	"AFG3L2,ANKRD12,ANKRD30B,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,NAPG,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,RAB31,RALBP1,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TWSG1,TXNDC2,VAPA,ZNF519"
TCGA.AA.A01S	18	9463897	19037560	1933	-0.95175	SMALL-LOSS	NONFOCAL	34	"AFG3L2,ANKRD30B,ANKRD62,APCDD1,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,GREB1L,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,NAPG,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,RAB31,RALBP1,RNMT,ROCK1,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,TXNDC2,VAPA,ZNF519"
TCGA.CA.5256	18	9594876	43548655	9406	-0.7806	SMALL-LOSS	NONFOCAL	104	Too-Many
TCGA.SS.A7HO	18	10038832	78015056	21912	-0.852	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.A6.5662	18	10555011	78015056	21526	-1.0387	SMALL-LOSS	NONFOCAL	226	Too-Many
TCGA.AG.3728	18	10585537	15215870	1309	-0.7576	SMALL-LOSS	NONFOCAL	25	"AFG3L2,ANKRD30B,ANKRD62,CEP192,CEP76,CHMP1B,CIDEA,FAM210A,GNAL,IMPA2,LDLRAD4,MC2R,MC5R,MPPE1,PIEZO2,POTEC,PSMG2,PTPN2,RNMT,SEH1L,SLC35G4,SLMO1,SPIRE1,TUBB6,ZNF519"
TCGA.DT.5265	18	11649013	13240189	400	-0.5536	SMALL-LOSS	NONFOCAL	16	"AFG3L2,ANKRD62,CEP192,CEP76,CHMP1B,CIDEA,GNAL,IMPA2,LDLRAD4,MPPE1,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.AG.3909.01A	18	11752384	12948074	94	-0.5677	SMALL-LOSS	NONFOCAL	14	"AFG3L2,ANKRD62,CEP76,CHMP1B,CIDEA,GNAL,IMPA2,MPPE1,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.AG.3584	18	12160235	13446928	309	-0.6744	SMALL-LOSS	NONFOCAL	11	"AFG3L2,CEP192,CEP76,CIDEA,LDLRAD4,PSMG2,PTPN2,SEH1L,SLMO1,SPIRE1,TUBB6"
TCGA.AG.3891.01A	18	12985149	18690726	119	-0.5199	SMALL-LOSS	NONFOCAL	11	"ANKRD30B,CEP192,FAM210A,LDLRAD4,MC2R,MC5R,POTEC,RNMT,ROCK1,SEH1L,ZNF519"
TCGA.AA.A01Z	18	13246167	78015056	20758	-0.8728	SMALL-LOSS	NONFOCAL	209	Too-Many
TCGA.AG.A00C.01A	18	13438192	19358011	109	-0.5475	SMALL-LOSS	NONFOCAL	14	"ABHD3,ANKRD30B,ESCO1,FAM210A,GREB1L,LDLRAD4,MC2R,MC5R,MIB1,POTEC,RNMT,ROCK1,SNRPD1,ZNF519"
TCGA.AG.3598	18	13462897	34030934	4898	-0.9817	SMALL-LOSS	NONFOCAL	70	"ABHD3,ANKRD29,ANKRD30B,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FAM210A,FHOD3,GALNT1,GAREM,GATA6,GREB1L,HRH4,IMPACT,INO80C,KCTD1,KLHL14,LAMA3,LDLRAD4,MAPRE2,MC2R,MC5R,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,POTEC,PSMA8,RBBP8,RIOK3,RNF125,RNF138,RNMT,ROCK1,RPRD1A,SLC25A52,SLC39A6,SNRPD1,SS18,TAF4B,TMEM241,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF519,ZNF521,ZSCAN30"
TCGA.AG.3584	18	13478188	78015056	20664	-0.6567	SMALL-LOSS	NONFOCAL	209	Too-Many
TCGA.DM.A1DB	18	13804918	78015056	20532	-0.7571	SMALL-LOSS	NONFOCAL	206	Too-Many
TCGA.AG.3727	18	14481712	78015056	20378	-0.8207	SMALL-LOSS	NONFOCAL	203	Too-Many
TCGA.AG.A014.01A	18	14779890	55218495	1305	-0.6051	SMALL-LOSS	NONFOCAL	126	Too-Many
TCGA.G5.6641	18	15215870	25828972	2143	-0.5235	SMALL-LOSS	NONFOCAL	29	"ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CDH2,CHST9,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.AM.5820	18	15215870	77288531	20081	-0.7287	SMALL-LOSS	NONFOCAL	193	Too-Many
TCGA.AF.2693	18	15215870	78015056	20295	-0.5724	SMALL-LOSS	NONFOCAL	201	Too-Many
TCGA.NH.A6GC	18	15215870	78015056	20276	-1.1727	SMALL-LOSS	NONFOCAL	201	Too-Many
TCGA.AG.A036.01A	18	17498028	26866097	362	-0.6762	SMALL-LOSS	NONFOCAL	29	"ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CDH2,CHST9,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.AA.3509.01A	18	18531245	20945515	146	-0.733	SMALL-LOSS	NONFOCAL	11	"ABHD3,CABLES1,CTAGE1,ESCO1,GATA6,GREB1L,MIB1,RBBP8,ROCK1,SNRPD1,TMEM241"
TCGA.AG.3591	18	18560353	28777596	3011	-0.7338	SMALL-LOSS	NONFOCAL	32	"ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CDH2,CHST9,CTAGE1,DSC1,DSC2,DSC3,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521"
TCGA.D5.5540	18	18560353	34067977	4544	-0.8147	SMALL-LOSS	NONFOCAL	62	"ABHD3,ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,ESCO1,FHOD3,GALNT1,GAREM,GATA6,GREB1L,HRH4,IMPACT,INO80C,KCTD1,KLHL14,LAMA3,MAPRE2,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,RNF125,RNF138,ROCK1,RPRD1A,SLC25A52,SLC39A6,SNRPD1,SS18,TAF4B,TMEM241,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.3655	18	18560353	47856712	9107	-0.9488	SMALL-LOSS	NONFOCAL	103	Too-Many
TCGA.DY.A1DF	18	18560353	67487570	16041	-0.5659	SMALL-LOSS	NONFOCAL	168	Too-Many
TCGA.G5.6572	18	18560353	78015056	20252	-0.6453	SMALL-LOSS	NONFOCAL	201	Too-Many
TCGA.AA.A01C.01A	18	18595325	29800100	531	-0.6559	SMALL-LOSS	NONFOCAL	43	"ABHD3,ANKRD29,AQP4,B4GALT6,C18orf8,CABLES1,CABYR,CDH2,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MEP1B,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,RNF125,RNF138,ROCK1,SLC25A52,SNRPD1,SS18,TAF4B,TMEM241,TRAPPC8,TTC39C,TTR,ZNF521"
TCGA.CK.5914.01A	18	19146061	21357455	164	-0.6638	SMALL-LOSS	NONFOCAL	14	"ABHD3,ANKRD29,C18orf8,CABLES1,CTAGE1,ESCO1,GATA6,LAMA3,MIB1,NPC1,RBBP8,RIOK3,SNRPD1,TMEM241"
TCGA.AG.A01Y	18	19234817	34779931	4670	-0.7567	SMALL-LOSS	NONFOCAL	60	"ABHD3,ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,GATA6,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MIB1,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.3679	18	19355506	78015056	20233	-0.7582	SMALL-LOSS	NONFOCAL	196	Too-Many
TCGA.G4.6322	18	19446992	21401923	509	-0.8444	SMALL-LOSS	NONFOCAL	11	"ANKRD29,C18orf8,CABLES1,CTAGE1,GATA6,LAMA3,MIB1,NPC1,RBBP8,RIOK3,TMEM241"
TCGA.NH.A50U	18	19462039	78015056	20212	-1.3106	SMALL-LOSS	NONFOCAL	195	Too-Many
TCGA.AA.3549	18	19496982	48116917	9132	-0.7185	SMALL-LOSS	NONFOCAL	99	"ACAA2,ANKRD29,AQP4,ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,C18orf32,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CFAP53,CHST9,CTAGE1,CTIF,CXXC1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,DYM,ELP2,EPG5,FHOD3,GALNT1,GAREM,GATA6,HAUS1,HDHD2,HRH4,IER3IP1,IMPACT,INO80C,KATNAL2,KCTD1,KIAA1328,KLHL14,LAMA3,LIPG,LOXHD1,MAPK4,MAPRE2,MBD1,MEP1B,MOCOS,MYO5B,NOL4,NPC1,OSBPL1A,PIAS2,PIK3C3,PSMA8,PSTPIP2,RBBP8,RIOK3,RIT2,RNF125,RNF138,RNF165,RPL17,RPL17-C18orf32,RPRD1A,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SMAD2,SMAD7,SS18,ST8SIA5,SYT4,TAF4B,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZBTB7C,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.F4.6459	18	19580193	78015056	20186	-0.5314	SMALL-LOSS	NONFOCAL	195	Too-Many
TCGA.AZ.4681	18	19735668	78015056	20126	-0.8691	SMALL-LOSS	NONFOCAL	195	Too-Many
TCGA.AG.A008.01A	18	19780567	44470496	876	-0.7355	SMALL-LOSS	NONFOCAL	75	"ANKRD29,AQP4,ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,CTAGE1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,EPG5,FHOD3,GALNT1,GAREM,GATA6,HAUS1,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,LOXHD1,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PIAS2,PIK3C3,PSMA8,PSTPIP2,RBBP8,RIOK3,RIT2,RNF125,RNF138,RNF165,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SS18,ST8SIA5,SYT4,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AH.6544	18	19930584	66250993	15317	-0.6561	SMALL-LOSS	NONFOCAL	158	Too-Many
TCGA.AA.3872	18	19940194	51065246	10104	-0.7182	SMALL-LOSS	NONFOCAL	104	Too-Many
TCGA.4T.AA8H	18	20064590	63637050	14386	-0.5214	SMALL-LOSS	NONFOCAL	155	Too-Many
TCGA.DC.6158	18	20160452	78015056	19932	-0.7525	SMALL-LOSS	NONFOCAL	193	Too-Many
TCGA.QG.A5YX	18	20566495	34905110	4345	-1.0057	SMALL-LOSS	NONFOCAL	57	"ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.3870	18	20647290	35570669	4618	-0.5874	SMALL-LOSS	NONFOCAL	56	"ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABLES1,CABYR,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RIOK3,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TMEM241,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.A01S	18	21027034	35393016	4471	-0.96875	SMALL-LOSS	NONFOCAL	54	"ANKRD29,AQP4,ASXL3,B4GALT6,C18orf21,C18orf8,CABYR,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,LAMA3,MAPRE2,MEP1B,MOCOS,NOL4,NPC1,OSBPL1A,PSMA8,RIOK3,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TPGS2,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.3524	18	21127909	78015056	19767	-0.7823	SMALL-LOSS	NONFOCAL	188	Too-Many
TCGA.AF.2690	18	21142991	27514494	2084	-0.6234	SMALL-LOSS	NONFOCAL	16	"ANKRD29,AQP4,CABYR,CDH2,CHST9,HRH4,IMPACT,KCTD1,LAMA3,NPC1,OSBPL1A,PSMA8,SS18,TAF4B,TTC39C,ZNF521"
TCGA.4N.A93T	18	21205565	48343649	8785	-0.8079	SMALL-LOSS	NONFOCAL	92	"ACAA2,ANKRD29,AQP4,ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,C18orf32,CABYR,CCDC178,CDH2,CELF4,CFAP53,CHST9,CTIF,CXXC1,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,DYM,ELP2,EPG5,FHOD3,GALNT1,GAREM,HAUS1,HDHD2,HRH4,IER3IP1,IMPACT,INO80C,KATNAL2,KCTD1,KIAA1328,KLHL14,LAMA3,LIPG,LOXHD1,MAPK4,MAPRE2,MBD1,MEP1B,MOCOS,MRO,MYO5B,NOL4,OSBPL1A,PIAS2,PIK3C3,PSMA8,PSTPIP2,RIT2,RNF125,RNF138,RNF165,RPL17,RPL17-C18orf32,RPRD1A,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SMAD2,SMAD7,SS18,ST8SIA5,SYT4,TAF4B,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TPGS2,TRAPPC8,TTC39C,TTR,ZBTB7C,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AG.3906.01A	18	21293887	47101712	849	-0.6023	SMALL-LOSS	NONFOCAL	83	"AQP4,ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,C18orf32,CABYR,CCDC178,CDH2,CELF4,CHST9,CTIF,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,DYM,ELP2,EPG5,FHOD3,GALNT1,GAREM,HAUS1,HDHD2,HRH4,IER3IP1,IMPACT,INO80C,KATNAL2,KCTD1,KIAA1328,KLHL14,LAMA3,LIPG,LOXHD1,MAPRE2,MEP1B,MOCOS,NOL4,OSBPL1A,PIAS2,PIK3C3,PSMA8,PSTPIP2,RIT2,RNF125,RNF138,RNF165,RPL17,RPL17-C18orf32,RPRD1A,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SMAD2,SMAD7,SS18,ST8SIA5,SYT4,TAF4B,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TPGS2,TRAPPC8,TTC39C,TTR,ZBTB7C,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.CM.5862	18	21653163	34071726	3875	-1.0268	SMALL-LOSS	NONFOCAL	46	"AQP4,ASXL3,B4GALT6,C18orf21,CABYR,CCDC178,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,OSBPL1A,PSMA8,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TRAPPC8,TTC39C,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AA.3858	18	21680968	66751083	15057	-0.7101	SMALL-LOSS	NONFOCAL	151	Too-Many
TCGA.AG.A01W.01A	18	21978482	40535274	491	-0.703	SMALL-LOSS	NONFOCAL	48	"AQP4,ASXL3,B4GALT6,C18orf21,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,PIK3C3,PSMA8,RIT2,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,SS18,TAF4B,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AG.3891.01A	18	22022991	43578684	600	-0.607	SMALL-LOSS	NONFOCAL	55	"AQP4,ASXL3,B4GALT6,C18orf21,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,EPG5,FHOD3,GALNT1,GAREM,HRH4,IMPACT,INO80C,KCTD1,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,PIK3C3,PSMA8,PSTPIP2,RIT2,RNF125,RNF138,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SS18,SYT4,TAF4B,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZNF521,ZSCAN30"
TCGA.AG.A00C.01A	18	22028006	32720210	335	-0.7539	SMALL-LOSS	NONFOCAL	31	"AQP4,ASXL3,B4GALT6,CCDC178,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,GAREM,HRH4,IMPACT,KCTD1,KLHL14,MAPRE2,MEP1B,NOL4,PSMA8,RNF125,RNF138,SLC25A52,SS18,TAF4B,TRAPPC8,TTR,ZNF521"
TCGA.DM.A1D4	18	23411484	78015056	18935	-0.8029	SMALL-LOSS	NONFOCAL	179	Too-Many
TCGA.DM.A1D7	18	23536465	54612861	9868	-0.7077	SMALL-LOSS	NONFOCAL	99	"ACAA2,AQP4,ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,C18orf32,C18orf54,CCDC178,CCDC68,CDH2,CELF4,CFAP53,CHST9,CTIF,CXXC1,DCC,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,DYM,DYNAP,ELAC1,ELP2,EPG5,FHOD3,GALNT1,GAREM,HAUS1,HDHD2,IER3IP1,INO80C,KATNAL2,KCTD1,KIAA1328,KLHL14,LIPG,LOXHD1,MAPK4,MAPRE2,MBD1,MBD2,ME2,MEP1B,MEX3C,MOCOS,MRO,MYO5B,NOL4,PIAS2,PIK3C3,POLI,PSMA8,PSTPIP2,RAB27B,RIT2,RNF125,RNF138,RNF165,RPL17,RPL17-C18orf32,RPRD1A,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SLC25A52,SLC39A6,SMAD2,SMAD4,SMAD7,SS18,ST8SIA5,STARD6,SYT4,TAF4B,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TPGS2,TRAPPC8,TTR,TXNL1,WDR7,ZBTB7C,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AG.3728	18	24139629	29665711	1745	-0.6856	SMALL-LOSS	NONFOCAL	16	"AQP4,B4GALT6,CDH2,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,KCTD1,RNF125,SLC25A52,TRAPPC8,TTR"
TCGA.AA.3980.01A	18	24604013	44548627	662	-0.5243	SMALL-LOSS	NONFOCAL	57	"ASXL3,ATP5A1,B4GALT6,C18orf21,C18orf25,CCDC178,CDH2,CELF4,CHST9,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,EPG5,FHOD3,GALNT1,GAREM,HAUS1,INO80C,KATNAL2,KIAA1328,KLHL14,LOXHD1,MAPRE2,MEP1B,MOCOS,NOL4,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF125,RNF138,RNF165,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC25A52,SLC39A6,ST8SIA5,SYT4,TCEB3CL,TCEB3CL2,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AA.3952	18	25071968	78015056	18392	-0.6507	SMALL-LOSS	NONFOCAL	173	Too-Many
TCGA.AF.6672	18	25601499	78015056	18175	-1.0243	SMALL-LOSS	NONFOCAL	173	Too-Many
TCGA.D5.6898	18	25705138	78015056	18130	-0.5352	SMALL-LOSS	NONFOCAL	173	Too-Many
TCGA.AF.6136	18	25976537	78015056	18078	-0.7791	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.DM.A28H	18	26008275	78015056	18067	-0.6377	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.AD.6965	18	26196129	78015056	18009	-0.6698	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.AF.3911	18	26467538	72344237	15757	-1.257	SMALL-LOSS	NONFOCAL	153	Too-Many
TCGA.EI.6881	18	26550829	78015056	17919	-0.5739	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.DM.A285	18	27203018	78015056	17749	-0.8645	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.NH.A50V	18	27209395	32841867	1661	-0.5464	SMALL-LOSS	NONFOCAL	23	"ASXL3,B4GALT6,CCDC178,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,GAREM,KLHL14,MAPRE2,MEP1B,NOL4,RNF125,RNF138,SLC25A52,TRAPPC8,TTR,ZNF397,ZSCAN30"
TCGA.AG.3881	18	27261356	78015056	17761	-0.8663	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.AG.A036.01A	18	27593703	42956525	565	-0.6965	SMALL-LOSS	NONFOCAL	41	"ASXL3,B4GALT6,C18orf21,CCDC178,CELF4,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,PIK3C3,RIT2,RNF125,RNF138,RPRD1A,SETBP1,SLC14A2,SLC25A52,SLC39A6,SYT4,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.EI.6508	18	27782014	78015056	17635	-0.7765	SMALL-LOSS	NONFOCAL	172	Too-Many
TCGA.AA.3844	18	28169661	35685063	2248	-1.0374	SMALL-LOSS	NONFOCAL	36	"ASXL3,B4GALT6,C18orf21,CCDC178,CELF4,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.D5.6922	18	28202871	39875719	3521	-1.0005	SMALL-LOSS	NONFOCAL	37	"ASXL3,B4GALT6,C18orf21,CCDC178,CELF4,DSC1,DSC2,DSC3,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,PIK3C3,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AG.3909.01A	18	28710429	32720210	232	-0.8908	SMALL-LOSS	NONFOCAL	19	"ASXL3,B4GALT6,CCDC178,DSC1,DSG1,DSG2,DSG3,DSG4,DTNA,GAREM,KLHL14,MAPRE2,MEP1B,NOL4,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.AG.3594	18	28898293	39130907	3078	-0.6336	SMALL-LOSS	NONFOCAL	33	"ASXL3,B4GALT6,C18orf21,CCDC178,CELF4,DSG1,DSG2,DSG3,DSG4,DTNA,ELP2,FHOD3,GALNT1,GAREM,INO80C,KIAA1328,KLHL14,MAPRE2,MEP1B,MOCOS,NOL4,RNF125,RNF138,RPRD1A,SLC25A52,SLC39A6,TPGS2,TRAPPC8,TTR,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.AG.A016.01A	18	29098118	31250590	118	-0.8227	SMALL-LOSS	NONFOCAL	12	"ASXL3,B4GALT6,CCDC178,DSG2,GAREM,KLHL14,MEP1B,RNF125,RNF138,SLC25A52,TRAPPC8,TTR"
TCGA.AA.3681	18	29169824	78015056	17119	-0.5337	SMALL-LOSS	NONFOCAL	165	Too-Many
TCGA.CM.6677	18	30359621	36966610	1903	-0.6418	SMALL-LOSS	NONFOCAL	20	"ASXL3,C18orf21,CCDC178,CELF4,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,NOL4,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.CL.4957	18	31117471	78015056	16564	-1.0564	SMALL-LOSS	NONFOCAL	155	Too-Many
TCGA.AG.A016.01A	18	31673418	39535191	170	-0.8933	SMALL-LOSS	NONFOCAL	19	"C18orf21,CELF4,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,NOL4,PIK3C3,RPRD1A,SLC39A6,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.G4.6306	18	31852895	78015056	16382	-0.6783	SMALL-LOSS	NONFOCAL	153	Too-Many
TCGA.AG.A01L.01A	18	32345869	43405630	231	-0.577	SMALL-LOSS	NONFOCAL	24	"C18orf21,CELF4,DTNA,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MAPRE2,MOCOS,PIK3C3,RIT2,RPRD1A,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SLC39A6,SYT4,TPGS2,ZNF24,ZNF396,ZNF397,ZSCAN30"
TCGA.DM.A288	18	33075098	34905110	535	-1.1885	SMALL-LOSS	NONFOCAL	11	"C18orf21,CELF4,ELP2,FHOD3,GALNT1,INO80C,KIAA1328,MOCOS,RPRD1A,SLC39A6,TPGS2"
TCGA.NH.A50V	18	33495993	78015056	15852	-0.598	SMALL-LOSS	NONFOCAL	145	Too-Many
TCGA.DM.A0XD	18	33653588	54612505	6897	-0.6383	SMALL-LOSS	NONFOCAL	63	"ACAA2,ATP5A1,C18orf25,C18orf32,C18orf54,CCDC68,CELF4,CFAP53,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,ELP2,EPG5,FHOD3,HAUS1,HDHD2,IER3IP1,KATNAL2,KIAA1328,LIPG,LOXHD1,MAPK4,MBD1,MBD2,ME2,MEX3C,MOCOS,MRO,MYO5B,PIAS2,PIK3C3,POLI,PSTPIP2,RAB27B,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SLC39A6,SMAD2,SMAD4,SMAD7,ST8SIA5,STARD6,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TPGS2,TXNL1,WDR7,ZBTB7C"
TCGA.AG.A00C.01A	18	33778596	43405630	130	-0.8042	SMALL-LOSS	NONFOCAL	12	"CELF4,FHOD3,KIAA1328,MOCOS,PIK3C3,RIT2,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SYT4,TPGS2"
TCGA.AG.3598	18	34037772	78015056	15732	-1.0555	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.AA.A02O	18	34081164	46156789	3953	-0.572	SMALL-LOSS	NONFOCAL	31	"ATP5A1,C18orf25,CELF4,CTIF,EPG5,FHOD3,HAUS1,HDHD2,IER3IP1,KATNAL2,KIAA1328,LOXHD1,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TPGS2,ZBTB7C"
TCGA.CM.5862	18	34127382	78015056	15685	-1.0211	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.D5.5539	18	34269345	78015056	15624	-0.9585	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.AA.3851	18	34276769	78015056	15624	-0.9479	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.DM.A1HA	18	34348174	78015056	15614	-0.955	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.D5.5540	18	34469464	78015056	15590	-0.8488	SMALL-LOSS	NONFOCAL	138	Too-Many
TCGA.EI.6513	18	34612603	78015056	15582	-0.8336	SMALL-LOSS	NONFOCAL	138	Too-Many
TCGA.QG.A5YX	18	34979959	78015056	15398	-1.0482	SMALL-LOSS	NONFOCAL	137	Too-Many
TCGA.AG.A00Y.01A	18	35145277	55230057	528	-0.6654	SMALL-LOSS	NONFOCAL	61	"ACAA2,ATP5A1,BOD1L2,C18orf25,C18orf32,C18orf54,CCDC68,CELF4,CFAP53,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,EPG5,FECH,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,MBD2,ME2,MEX3C,MRO,MYO5B,ONECUT2,PIAS2,PIK3C3,POLI,PSTPIP2,RAB27B,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA3,ST8SIA5,STARD6,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TXNL1,WDR7,ZBTB7C"
TCGA.AG.A01Y	18	35185857	50164899	5110	-0.8339	SMALL-LOSS	NONFOCAL	46	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DCC,DYM,ELAC1,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.A01S	18	35977067	44805919	2810	-0.98905	SMALL-LOSS	NONFOCAL	24	"ATP5A1,C18orf25,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2"
TCGA.AZ.4308	18	37098733	48472081	3859	-0.6638	SMALL-LOSS	NONFOCAL	42	"ACAA2,ATP5A1,C18orf25,C18orf32,CFAP53,CTIF,CXXC1,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,ME2,MRO,MYO5B,PIAS2,PIK3C3,PSTPIP2,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AA.3693	18	37131521	78015056	14782	-0.8816	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.AY.5543	18	37137302	78015056	14688	-0.6207	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.CM.6677	18	37259798	53566470	5392	-0.6258	SMALL-LOSS	NONFOCAL	54	"ACAA2,ATP5A1,C18orf25,C18orf32,C18orf54,CCDC68,CFAP53,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,MAPK4,MBD1,MBD2,ME2,MEX3C,MRO,MYO5B,PIAS2,PIK3C3,POLI,PSTPIP2,RAB27B,RIT2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA5,STARD6,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,ZBTB7C"
TCGA.AU.3779	18	38337849	43892413	1817	-0.8568	SMALL-LOSS	NONFOCAL	12	"ATP5A1,C18orf25,EPG5,HAUS1,PIK3C3,PSTPIP2,RIT2,SETBP1,SIGLEC15,SLC14A1,SLC14A2,SYT4"
TCGA.DM.A1D6	18	38463588	78015056	14375	-0.8472	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.EF.5830	18	38724920	59505347	7240	-0.7447	SMALL-LOSS	NONFOCAL	78	"ACAA2,ALPK2,ATP5A1,ATP8B1,BOD1L2,C18orf25,C18orf32,C18orf54,CCBE1,CCDC68,CDH20,CFAP53,CPLX4,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,EPG5,FECH,GRP,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LMAN1,LOC100505549,LOC101927322,LOXHD1,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PIAS2,PIK3C3,PMAIP1,POLI,PSTPIP2,RAB27B,RAX,RIT2,RNF152,RNF165,RPL17,RPL17-C18orf32,SEC11C,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA3,ST8SIA5,STARD6,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TXNL1,WDR7,ZBTB7C,ZNF532"
TCGA.QL.A97D	18	39049086	63549859	8513	-0.5628	SMALL-LOSS	NONFOCAL	98	"ACAA2,ALPK2,ATP5A1,ATP8B1,BCL2,BOD1L2,C18orf25,C18orf32,C18orf54,CCBE1,CCDC68,CDH20,CDH7,CFAP53,CPLX4,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,EPG5,FECH,GRP,HAUS1,HDHD2,HMSD,IER3IP1,KATNAL2,KDSR,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,LOXHD1,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIAS2,PIGN,PIK3C3,PMAIP1,POLI,PSTPIP2,RAB27B,RAX,RIT2,RNF152,RNF165,RPL17,RPL17-C18orf32,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA3,ST8SIA5,STARD6,SYT4,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZBTB7C,ZCCHC2,ZNF532"
TCGA.AG.3594	18	39135350	76660692	13846	-0.6342	SMALL-LOSS	NONFOCAL	125	Too-Many
TCGA.AZ.4614	18	39457608	68748609	10100	-0.8832	SMALL-LOSS	NONFOCAL	107	Too-Many
TCGA.5M.AAT4	18	40382793	78015056	13764	-0.8016	SMALL-LOSS	NONFOCAL	135	Too-Many
TCGA.F4.6808	18	41659546	78015056	13383	-0.6644	SMALL-LOSS	NONFOCAL	133	Too-Many
TCGA.D5.6922	18	41698003	75983083	12827	-1.014	SMALL-LOSS	NONFOCAL	122	Too-Many
TCGA.DM.A288	18	42068005	63462929	7539	-1.2043	SMALL-LOSS	NONFOCAL	95	"ACAA2,ALPK2,ATP5A1,ATP8B1,BCL2,BOD1L2,C18orf25,C18orf32,C18orf54,CCBE1,CCDC68,CDH20,CDH7,CFAP53,CPLX4,CTIF,CXXC1,DCC,DYM,DYNAP,ELAC1,EPG5,FECH,GRP,HAUS1,HDHD2,HMSD,IER3IP1,KATNAL2,KDSR,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,LOXHD1,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIAS2,PIGN,PMAIP1,POLI,PSTPIP2,RAB27B,RAX,RNF152,RNF165,RPL17,RPL17-C18orf32,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SETBP1,SIGLEC15,SKA1,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD4,SMAD7,ST8SIA3,ST8SIA5,STARD6,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZBTB7C,ZCCHC2,ZNF532"
TCGA.AA.3844	18	42308971	47195573	1743	-0.8032	SMALL-LOSS	NONFOCAL	30	"ATP5A1,C18orf25,C18orf32,CTIF,DYM,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LIPG,LOXHD1,PIAS2,PSTPIP2,RNF165,RPL17,RPL17-C18orf32,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AG.A01W.01A	18	42411628	45754710	164	-0.722	SMALL-LOSS	NONFOCAL	23	"ATP5A1,C18orf25,EPG5,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,PSTPIP2,RNF165,SETBP1,SIGLEC15,SKOR2,SLC14A1,SLC14A2,SMAD2,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AG.A036.01A	18	43645370	76106091	995	-0.7008	SMALL-LOSS	NONFOCAL	117	Too-Many
TCGA.AG.A00C.01A	18	43707970	46956584	106	-0.6736	SMALL-LOSS	NONFOCAL	19	"C18orf25,CTIF,DYM,HAUS1,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,RNF165,SKOR2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.AG.3891.01A	18	43795798	46448101	88	-0.5371	SMALL-LOSS	NONFOCAL	17	"C18orf25,CTIF,HDHD2,IER3IP1,KATNAL2,LOXHD1,PIAS2,RNF165,SKOR2,SMAD2,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.CM.6675	18	43984424	78015056	12528	-1.0711	SMALL-LOSS	NONFOCAL	124	Too-Many
TCGA.AG.A02X.01A	18	44260008	50450039	230	-1.0628	SMALL-LOSS	NONFOCAL	32	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DCC,DYM,ELAC1,HDHD2,IER3IP1,KATNAL2,LIPG,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,PIAS2,RPL17,RPL17-C18orf32,SKA1,SKOR2,SMAD2,SMAD4,SMAD7,ST8SIA5,TCEB3B,TCEB3C,TCEB3CL,TCEB3CL2,ZBTB7C"
TCGA.CM.6165.01A	18	44554544	47095760	84	-0.543	SMALL-LOSS	NONFOCAL	16	"C18orf32,CTIF,DYM,HDHD2,IER3IP1,KATNAL2,LIPG,RPL17,RPL17-C18orf32,SKOR2,SMAD2,SMAD7,TCEB3B,TCEB3C,TCEB3CL,ZBTB7C"
TCGA.DM.A282.01A	18	44554544	51889124	270	-0.6264	SMALL-LOSS	NONFOCAL	33	"ACAA2,C18orf32,C18orf54,CFAP53,CTIF,CXXC1,DCC,DYM,ELAC1,HDHD2,IER3IP1,KATNAL2,LIPG,MAPK4,MBD1,MBD2,ME2,MEX3C,MRO,MYO5B,POLI,RPL17,RPL17-C18orf32,SKA1,SKOR2,SMAD2,SMAD4,SMAD7,STARD6,TCEB3B,TCEB3C,TCEB3CL,ZBTB7C"
TCGA.AG.A01L.01A	18	44554544	74074386	880	-0.5456	SMALL-LOSS	NONFOCAL	104	Too-Many
TCGA.AG.A008.01A	18	44559913	77960563	994	-0.6978	SMALL-LOSS	NONFOCAL	117	Too-Many
TCGA.DT.5265	18	45297805	48518390	1198	-0.5828	SMALL-LOSS	NONFOCAL	19	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DYM,ELAC1,LIPG,MAPK4,MBD1,ME2,MRO,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD2,SMAD7,ZBTB7C"
TCGA.AA.3509.01A	18	45396789	49867104	181	-0.7516	SMALL-LOSS	NONFOCAL	22	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DCC,DYM,ELAC1,LIPG,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD2,SMAD4,SMAD7,ZBTB7C"
TCGA.AZ.4684.01A	18	45396789	50432366	183	-0.5315	SMALL-LOSS	NONFOCAL	22	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DCC,DYM,ELAC1,LIPG,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD2,SMAD4,SMAD7,ZBTB7C"
TCGA.AA.A01S	18	45597649	78015056	12035	-0.96645	SMALL-LOSS	NONFOCAL	111	Too-Many
TCGA.CA.5256	18	45636461	48468780	1088	-0.8763	SMALL-LOSS	NONFOCAL	17	"ACAA2,C18orf32,CFAP53,CTIF,CXXC1,DYM,LIPG,MAPK4,MBD1,ME2,MRO,MYO5B,RPL17,RPL17-C18orf32,SKA1,SMAD7,ZBTB7C"
TCGA.AG.A01W.01A	18	46835138	53420996	157	-0.6425	SMALL-LOSS	NONFOCAL	26	"ACAA2,C18orf32,C18orf54,CCDC68,CFAP53,CXXC1,DCC,DYM,DYNAP,ELAC1,LIPG,MAPK4,MBD1,MBD2,ME2,MEX3C,MRO,MYO5B,POLI,RAB27B,RPL17,RPL17-C18orf32,SKA1,SMAD4,STARD6,TCF4"
TCGA.DM.A28K	18	47113007	78015056	11502	-0.9171	SMALL-LOSS	NONFOCAL	104	Too-Many
TCGA.CM.6165.01A	18	47113069	60985255	533	-0.5379	SMALL-LOSS	NONFOCAL	52	"ACAA2,ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC68,CDH20,CFAP53,CPLX4,CXXC1,DCC,DYNAP,ELAC1,FECH,GRP,KIAA1468,LIPG,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD1,MBD2,MC4R,ME2,MEX3C,MRO,MYO5B,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SKA1,SMAD4,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,WDR7,ZCCHC2,ZNF532"
TCGA.AA.3844	18	47197178	48965939	706	-0.7914	SMALL-LOSS	NONFOCAL	12	"ACAA2,CFAP53,CXXC1,ELAC1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,SKA1,SMAD4"
TCGA.G4.6310	18	47199407	48951751	697	-0.9507	SMALL-LOSS	NONFOCAL	12	"ACAA2,CFAP53,CXXC1,ELAC1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,SKA1,SMAD4"
TCGA.AG.3906.01A	18	47363032	77960563	898	-0.6205	SMALL-LOSS	NONFOCAL	102	Too-Many
TCGA.G4.6322	18	47405802	50052728	1071	-0.859	SMALL-LOSS	NONFOCAL	12	"CFAP53,CXXC1,DCC,ELAC1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,SKA1,SMAD4"
TCGA.AA.A02O	18	47447017	78015056	11382	-0.5592	SMALL-LOSS	NONFOCAL	102	Too-Many
TCGA.AU.3779	18	47486078	48798825	494	-0.9264	SMALL-LOSS	NONFOCAL	11	"CFAP53,CXXC1,ELAC1,MAPK4,MBD1,ME2,MEX3C,MRO,MYO5B,SKA1,SMAD4"
TCGA.AG.3891.01A	18	47906474	54363425	158	-0.5313	SMALL-LOSS	NONFOCAL	18	"C18orf54,CCDC68,DCC,DYNAP,ELAC1,MAPK4,MBD2,ME2,MEX3C,MRO,POLI,RAB27B,SKA1,SMAD4,STARD6,TCF4,TXNL1,WDR7"
TCGA.DM.A28F	18	47918535	78015056	11137	-0.5938	SMALL-LOSS	NONFOCAL	98	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD2,MBP,MC4R,ME2,MEX3C,MRO,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SKA1,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.D5.6531	18	47938633	78015056	11149	-0.5517	SMALL-LOSS	NONFOCAL	97	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MAPK4,MBD2,MBP,MC4R,ME2,MEX3C,MRO,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.A016.01A	18	48422169	77960563	811	-0.8453	SMALL-LOSS	NONFOCAL	95	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,ME2,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.A6.6138	18	48422898	63902249	5364	-0.5217	SMALL-LOSS	NONFOCAL	57	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC68,CDH20,CDH7,CPLX4,DCC,DYNAP,ELAC1,FECH,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MC4R,ME2,MEX3C,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AZ.6606	18	48464203	78015056	10882	-0.7405	SMALL-LOSS	NONFOCAL	95	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,ME2,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3560	18	48511620	72951180	8906	-1.2019	SMALL-LOSS	NONFOCAL	77	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,C18orf63,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CYB5A,DCC,DOK6,DSEL,DYNAP,ELAC1,FAM69C,FBXO15,FECH,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MC4R,MEX3C,NARS,NEDD4L,NETO1,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF407,ZNF532"
TCGA.4N.A93T	18	48571371	78015056	10904	-0.7955	SMALL-LOSS	NONFOCAL	93	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.A6.6650	18	48571371	78015056	9923	-0.5298	SMALL-LOSS	NONFOCAL	93	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AD.A5EK	18	48594897	78015056	10843	-0.9006	SMALL-LOSS	NONFOCAL	93	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMAD4,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.EI.6509	18	48632382	78015056	10904	-0.7794	SMALL-LOSS	NONFOCAL	92	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.3728	18	48666625	78015056	10899	-0.7434	SMALL-LOSS	NONFOCAL	92	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AZ.4308	18	48666625	78015056	10888	-0.6503	SMALL-LOSS	NONFOCAL	92	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.D5.6932	18	48708547	78015056	10848	-0.6423	SMALL-LOSS	NONFOCAL	92	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,MEX3C,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.3893	18	48854627	54598871	1809	-0.5464	SMALL-LOSS	NONFOCAL	11	"C18orf54,CCDC68,DCC,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4,TXNL1,WDR7"
TCGA.AA.3844	18	48966201	54982203	1950	-1.2614	SMALL-LOSS	NONFOCAL	12	"BOD1L2,C18orf54,CCDC68,DCC,DYNAP,MBD2,POLI,RAB27B,STARD6,TCF4,TXNL1,WDR7"
TCGA.AA.3655	18	49364195	60582901	3905	-0.9517	SMALL-LOSS	NONFOCAL	38	"ALPK2,ATP8B1,BOD1L2,C18orf54,CCBE1,CCDC68,CDH20,CPLX4,DCC,DYNAP,FECH,GRP,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MC4R,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,WDR7,ZCCHC2,ZNF532"
TCGA.AG.A01Y	18	50173000	78015056	10260	-0.783	SMALL-LOSS	NONFOCAL	91	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3664	18	50718756	66751083	5509	-0.7927	SMALL-LOSS	NONFOCAL	57	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC102B,CCDC68,CDH19,CDH20,CDH7,CPLX4,DCC,DSEL,DYNAP,FECH,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MC4R,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,ST8SIA3,STARD6,TCF4,TMX3,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AA.3870	18	50880001	78015056	10023	-0.5696	SMALL-LOSS	NONFOCAL	91	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DCC,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.A032.01A	18	51056882	65180726	482	-1.0124	SMALL-LOSS	NONFOCAL	55	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC68,CDH19,CDH20,CDH7,CPLX4,DCC,DSEL,DYNAP,FECH,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MC4R,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,ST8SIA3,STARD6,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AA.3872	18	51085690	78015056	9968	-0.6938	SMALL-LOSS	NONFOCAL	90	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3561	18	51212757	66377626	5242	-0.9231	SMALL-LOSS	NONFOCAL	55	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf54,CCBE1,CCDC68,CDH19,CDH20,CDH7,CPLX4,DSEL,DYNAP,FECH,GRP,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MC4R,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,POLI,RAB27B,RAX,RNF152,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,ST8SIA3,STARD6,TCF4,TMX3,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.D5.6535	18	51477720	78015056	9836	-1.0129	SMALL-LOSS	NONFOCAL	90	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBD2,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,POLI,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,STARD6,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.CA.5256	18	51680220	56055771	1420	-0.7692	SMALL-LOSS	NONFOCAL	18	"ATP8B1,BOD1L2,C18orf54,CCDC68,DYNAP,FECH,LOC100505549,MBD2,NARS,NEDD4L,ONECUT2,POLI,RAB27B,ST8SIA3,STARD6,TCF4,TXNL1,WDR7"
TCGA.AG.A00C.01A	18	51898828	55238587	89	-0.7623	SMALL-LOSS	NONFOCAL	11	"BOD1L2,C18orf54,CCDC68,DYNAP,FECH,ONECUT2,RAB27B,ST8SIA3,TCF4,TXNL1,WDR7"
TCGA.DM.A282.01A	18	51904483	78005105	778	-0.6459	SMALL-LOSS	NONFOCAL	87	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf54,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CCDC68,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,DYNAP,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAB27B,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TCF4,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3509.01A	18	52585094	59922619	273	-0.6588	SMALL-LOSS	NONFOCAL	28	"ALPK2,ATP8B1,BOD1L2,CCBE1,CCDC68,CDH20,CPLX4,FECH,GRP,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MC4R,NARS,NEDD4L,ONECUT2,PIGN,PMAIP1,RAX,RNF152,SEC11C,ST8SIA3,TCF4,TXNL1,WDR7,ZNF532"
TCGA.CK.5914.01A	18	53131241	56118247	127	-0.6133	SMALL-LOSS	NONFOCAL	11	"ATP8B1,BOD1L2,FECH,LOC100505549,NARS,NEDD4L,ONECUT2,ST8SIA3,TCF4,TXNL1,WDR7"
TCGA.AA.A01C.01A	18	53252466	61260046	338	-0.6051	SMALL-LOSS	NONFOCAL	36	"ALPK2,ATP8B1,BCL2,BOD1L2,CCBE1,CDH20,CPLX4,FECH,GRP,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MC4R,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,RAX,RNF152,SEC11C,SERPINB12,SERPINB13,SERPINB5,ST8SIA3,TCF4,TNFRSF11A,TXNL1,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.AG.A01W.01A	18	53549811	75780136	606	-0.6229	SMALL-LOSS	NONFOCAL	71	"ALPK2,ATP8B1,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,ONECUT2,PHLPP1,PIGN,PMAIP1,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.CM.6677	18	53566549	78015056	9280	-1.0081	SMALL-LOSS	NONFOCAL	82	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.3893	18	54612505	69128135	5265	-0.5433	SMALL-LOSS	NONFOCAL	52	"ALPK2,ATP8B1,BCL2,BOD1L2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CPLX4,DOK6,DSEL,FECH,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MC4R,NARS,NEDD4L,ONECUT2,PHLPP1,PIGN,PMAIP1,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SOCS6,ST8SIA3,TMX3,TNFRSF11A,VPS4B,WDR7,ZCCHC2,ZNF532"
TCGA.DM.A0XD	18	54632501	78015056	8968	-0.654	SMALL-LOSS	NONFOCAL	81	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.DM.A1D7	18	54632501	78015056	9001	-0.7143	SMALL-LOSS	NONFOCAL	81	"ADNP2,ALPK2,ATP8B1,ATP9B,BCL2,BOD1L2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,FECH,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC100505549,LOC101927322,MALT1,MBP,MC4R,NARS,NEDD4L,NETO1,NFATC1,ONECUT2,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,ST8SIA3,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,WDR7,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3844	18	54987593	57715607	1191	-0.7269	SMALL-LOSS	NONFOCAL	18	"ALPK2,ATP8B1,CCBE1,CPLX4,FECH,GRP,LMAN1,LOC100505549,LOC101927322,MALT1,NARS,NEDD4L,ONECUT2,PMAIP1,RAX,SEC11C,ST8SIA3,ZNF532"
TCGA.AF.2690	18	55803742	78015056	8474	-0.6197	SMALL-LOSS	NONFOCAL	73	"ADNP2,ALPK2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MBP,MC4R,NEDD4L,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.3891.01A	18	55983143	73139339	486	-0.5853	SMALL-LOSS	NONFOCAL	57	"ALPK2,BCL2,C18orf63,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MC4R,NEDD4L,NETO1,PHLPP1,PIGN,PMAIP1,RAX,RNF152,RTTN,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,VPS4B,ZADH2,ZCCHC2,ZNF407,ZNF532"
TCGA.AG.A00Y.01A	18	55983143	77477497	579	-0.6528	SMALL-LOSS	NONFOCAL	66	"ALPK2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GRP,GTSCR1,HMSD,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MBP,MC4R,NEDD4L,NETO1,NFATC1,PHLPP1,PIGN,PMAIP1,RAX,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AA.3939.01A	18	55983143	78005105	641	-0.6212	SMALL-LOSS	NONFOCAL	73	"ADNP2,ALPK2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MBP,MC4R,NEDD4L,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.AG.A014.01A	18	55992191	77960563	592	-0.5674	SMALL-LOSS	NONFOCAL	73	"ADNP2,ALPK2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CPLX4,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GRP,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,LMAN1,LOC101927322,MALT1,MBP,MC4R,NEDD4L,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RAX,RBFA,RNF152,RTTN,SALL3,SEC11C,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516,ZNF532"
TCGA.G4.6314	18	57124644	78015056	7954	-0.7917	SMALL-LOSS	NONFOCAL	63	"ADNP2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCBE1,CCDC102B,CD226,CDH19,CDH20,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,MBP,MC4R,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PMAIP1,PQLC1,RBFA,RNF152,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3549	18	58856719	61498395	927	-0.659	SMALL-LOSS	NONFOCAL	17	"BCL2,CDH20,KDSR,KIAA1468,PHLPP1,PIGN,RNF152,SERPINB11,SERPINB12,SERPINB13,SERPINB3,SERPINB4,SERPINB5,SERPINB7,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.AA.3844	18	59131510	62133594	1063	-0.9251	SMALL-LOSS	NONFOCAL	21	"BCL2,CDH20,HMSD,KDSR,KIAA1468,PHLPP1,PIGN,RNF152,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,TNFRSF11A,VPS4B,ZCCHC2"
TCGA.EF.5830	18	59517884	78015056	7025	-0.7404	SMALL-LOSS	NONFOCAL	59	"ADNP2,ATP9B,BCL2,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,KIAA1468,MBP,NETO1,NFATC1,PARD6G,PHLPP1,PIGN,PQLC1,RBFA,RNF152,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TNFRSF11A,TSHZ1,TXNL4A,VPS4B,ZADH2,ZCCHC2,ZNF236,ZNF407,ZNF516"
TCGA.CM.6165.01A	18	61029975	78005105	424	-0.5303	SMALL-LOSS	NONFOCAL	52	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,KDSR,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB12,SERPINB13,SERPINB2,SERPINB3,SERPINB4,SERPINB5,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,VPS4B,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3982	18	61308294	71482489	3773	-0.5916	SMALL-LOSS	NONFOCAL	20	"CBLN2,CCDC102B,CD226,CDH19,CDH7,DOK6,DSEL,GTSCR1,HMSD,NETO1,RTTN,SERPINB10,SERPINB11,SERPINB2,SERPINB3,SERPINB4,SERPINB7,SERPINB8,SOCS6,TMX3"
TCGA.A6.2675	18	61313802	78015056	6381	-0.6192	SMALL-LOSS	NONFOCAL	46	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB2,SERPINB3,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3655	18	61334050	78015056	6425	-1.0023	SMALL-LOSS	NONFOCAL	45	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SERPINB10,SERPINB11,SERPINB2,SERPINB7,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.A01C.01A	18	61600265	77960563	309	-0.6064	SMALL-LOSS	NONFOCAL	42	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HMSD,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SERPINB10,SERPINB8,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.G5.6641	18	61767607	78015056	6243	-0.8762	SMALL-LOSS	NONFOCAL	39	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.4021	18	62175840	78002238	6098	-0.7513	SMALL-LOSS	NONFOCAL	39	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.3909.01A	18	63430097	77960563	308	-1.2077	SMALL-LOSS	NONFOCAL	39	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.QL.A97D	18	63587439	78015056	5667	-0.5987	SMALL-LOSS	NONFOCAL	38	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.4T.AA8H	18	63640538	78015056	5644	-0.5654	SMALL-LOSS	NONFOCAL	38	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.A6.6138	18	63912141	78015056	5563	-0.5358	SMALL-LOSS	NONFOCAL	38	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CDH19,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3941	18	64184312	71415633	2794	-0.9482	SMALL-LOSS	NONFOCAL	11	"CBLN2,CCDC102B,CD226,CDH19,DOK6,DSEL,GTSCR1,NETO1,RTTN,SOCS6,TMX3"
TCGA.AA.3549	18	64530462	78015056	5408	-0.7424	SMALL-LOSS	NONFOCAL	37	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.CM.5864	18	65273441	78015056	5155	-0.8861	SMALL-LOSS	NONFOCAL	36	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.NH.A8F8	18	65307106	78015056	5148	-0.6238	SMALL-LOSS	NONFOCAL	36	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AF.A56L	18	65318482	78015056	5138	-0.5766	SMALL-LOSS	NONFOCAL	36	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3561	18	66381893	74849967	3595	-0.9933	SMALL-LOSS	NONFOCAL	24	"C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CYB5A,DOK6,FAM69C,FBXO15,GTSCR1,MBP,NETO1,RTTN,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.A00C.01A	18	66678144	77066954	205	-0.691	SMALL-LOSS	NONFOCAL	26	"ATP9B,C18orf63,C18orf65,CBLN2,CCDC102B,CD226,CNDP1,CNDP2,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,MBP,NETO1,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3530	18	66724689	78015056	4572	-0.8369	SMALL-LOSS	NONFOCAL	34	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3660	18	66757786	78015056	4560	-0.6831	SMALL-LOSS	NONFOCAL	34	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3664	18	66757786	78015056	4565	-0.8567	SMALL-LOSS	NONFOCAL	34	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3858	18	66757786	78015056	4564	-0.7378	SMALL-LOSS	NONFOCAL	34	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AH.6544	18	66853924	78015056	4515	-0.7055	SMALL-LOSS	NONFOCAL	34	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.3575	18	67217541	78015056	4382	-0.7443	SMALL-LOSS	NONFOCAL	34	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.4015	18	67217541	78015056	4366	-0.5392	SMALL-LOSS	NONFOCAL	34	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CD226,CNDP1,CNDP2,CTDP1,CYB5A,DOK6,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.CK.5914.01A	18	67855317	72187187	63	-0.792	SMALL-LOSS	NONFOCAL	11	"C18orf63,CBLN2,CNDP2,CYB5A,FAM69C,FBXO15,GTSCR1,NETO1,RTTN,SOCS6,TIMM21"
TCGA.AA.3509.01A	18	67857774	78005105	231	-0.7669	SMALL-LOSS	NONFOCAL	32	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AZ.4684.01A	18	67857774	78005105	231	-0.5485	SMALL-LOSS	NONFOCAL	32	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.A02E.01A	18	67863705	77960563	192	-0.9454	SMALL-LOSS	NONFOCAL	32	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,GTSCR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.DY.A1DF	18	68570841	78015056	3916	-0.5918	SMALL-LOSS	NONFOCAL	29	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AG.3893	18	69131920	73871606	2209	-0.5786	SMALL-LOSS	NONFOCAL	13	"C18orf63,CBLN2,CNDP1,CNDP2,CYB5A,FAM69C,FBXO15,NETO1,SMIM21,TIMM21,TSHZ1,ZADH2,ZNF407"
TCGA.DT.5265	18	70100281	78015056	3304	-0.5463	SMALL-LOSS	NONFOCAL	29	"ADNP2,ATP9B,C18orf63,C18orf65,CBLN2,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NETO1,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3971	18	70960111	78015056	2939	-0.556	SMALL-LOSS	NONFOCAL	27	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.DM.A288	18	71419855	78015056	2683	-1.2446	SMALL-LOSS	NONFOCAL	27	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3844	18	71427892	78015056	2680	-0.8318	SMALL-LOSS	NONFOCAL	27	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.AA.3662	18	71660338	78015056	2548	-0.582	SMALL-LOSS	NONFOCAL	27	"ADNP2,ATP9B,C18orf63,C18orf65,CNDP1,CNDP2,CTDP1,CYB5A,FAM69C,FBXO15,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TIMM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF407,ZNF516"
TCGA.CK.5914.01A	18	72913364	78005105	144	-1.1241	SMALL-LOSS	NONFOCAL	19	"ADNP2,ATP9B,C18orf65,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,SMIM21,TSHZ1,TXNL4A,ZADH2,ZNF236,ZNF516"
TCGA.AA.3531	18	74074706	78015056	1407	-0.9128	SMALL-LOSS	NONFOCAL	16	"ADNP2,ATP9B,C18orf65,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A,ZNF236,ZNF516"
TCGA.DC.6157	18	74277673	78015056	1313	-1.0854	SMALL-LOSS	NONFOCAL	14	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A,ZNF236"
TCGA.AA.3861.01A	18	74680149	78005105	93	-0.6204	SMALL-LOSS	NONFOCAL	14	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,MBP,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A,ZNF236"
TCGA.AA.3561	18	74856771	78015056	1086	-1.0931	SMALL-LOSS	NONFOCAL	12	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AA.3488	18	74885469	78015056	1065	-0.5325	SMALL-LOSS	NONFOCAL	12	"ADNP2,ATP9B,CTDP1,GALR1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AZ.4614	18	75155253	78015056	900	-1.0805	SMALL-LOSS	NONFOCAL	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.F4.6461	18	75239673	78015056	882	-0.5762	SMALL-LOSS	NONFOCAL	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AA.3869	18	76669930	78015056	317	-0.5241	SMALL-LOSS	NONFOCAL	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AG.A026	18	76736379	78015056	296	-0.63	SMALL-LOSS	NONFOCAL	11	"ADNP2,ATP9B,CTDP1,HSBP1L1,KCNG2,NFATC1,PARD6G,PQLC1,RBFA,SALL3,TXNL4A"
TCGA.AA.A00O.01A	19	110628	6465492	626	-0.7504	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.AA.A02F.01A	19	110628	17330393	2050	-0.825	SMALL-LOSS	NONFOCAL	474	Too-Many
TCGA.AF.2693	19	260969	1302964	102	-0.5715	SMALL-LOSS	NONFOCAL	45	"ABCA7,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,EFNA2,ELANE,FGF22,FSTL3,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MED16,MIDN,MIER2,MISP,ODF3L2,PALM,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,RNF126,SBNO2,SHC2,STK11,THEG,TMEM259,TPGS1,WDR18"
TCGA.CM.6169	19	260969	1726232	136	-0.772	SMALL-LOSS	NONFOCAL	60	"ABCA7,ADAMTSL5,APC2,ARID3A,ATP5D,AZU1,BSG,C19orf24,C19orf25,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,KISS1R,LPPR3,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MUM1,NDUFS7,ODF3L2,PALM,PCSK4,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,RNF126,RPS15,SBNO2,SHC2,STK11,TCF3,THEG,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.A6.6142	19	260969	2135819	179	-0.858	SMALL-LOSS	NONFOCAL	73	"ABCA7,ABHD17A,ADAMTSL5,ADAT3,AP3D1,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,IZUMO4,KISS1R,KLF16,LPPR3,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MKNK2,MOB3A,MUM1,NDUFS7,ODF3L2,ONECUT3,PALM,PCSK4,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SHC2,STK11,TCF3,THEG,TMEM259,TPGS1,UQCR11,WDR18"
TCGA.4N.A93T	19	260969	3571445	395	-1.1254	SMALL-LOSS	NONFOCAL	111	Too-Many
TCGA.AA.3662	19	260969	5148629	571	-0.7257	SMALL-LOSS	NONFOCAL	157	Too-Many
TCGA.AG.3893	19	260969	5556912	653	-0.5671	SMALL-LOSS	NONFOCAL	159	Too-Many
TCGA.DT.5265	19	260969	6004104	734	-0.5661	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.D5.6922	19	260969	6288356	802	-0.5268	SMALL-LOSS	NONFOCAL	179	Too-Many
TCGA.DY.A1DF	19	260969	6479570	832	-0.6523	SMALL-LOSS	NONFOCAL	189	Too-Many
TCGA.EI.6513	19	260969	6988269	968	-0.8919	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.A6.2672	19	260969	7544473	1072	-0.774	SMALL-LOSS	NONFOCAL	207	Too-Many
TCGA.DM.A1HA	19	260969	8680206	1287	-1.0137	SMALL-LOSS	NONFOCAL	247	Too-Many
TCGA.A6.5665	19	260969	8949358	1327	-1.2583	SMALL-LOSS	NONFOCAL	250	Too-Many
TCGA.AG.3575	19	260969	10546770	1647	-0.7531	SMALL-LOSS	NONFOCAL	297	Too-Many
TCGA.EI.6509	19	260969	10727013	1663	-0.9048	SMALL-LOSS	NONFOCAL	304	Too-Many
TCGA.D5.6541	19	260969	13574704	2109	-0.5893	SMALL-LOSS	NONFOCAL	389	Too-Many
TCGA.AA.3952	19	260969	14777652	2256	-0.5822	SMALL-LOSS	NONFOCAL	418	Too-Many
TCGA.F5.6810	19	260969	15292087	2443	-0.525	SMALL-LOSS	NONFOCAL	432	Too-Many
TCGA.DY.A1DG	19	260969	19318157	3205	-0.5949	SMALL-LOSS	NONFOCAL	543	Too-Many
TCGA.A6.5661	19	260969	20743260	3415	-0.6954	SMALL-LOSS	NONFOCAL	566	Too-Many
TCGA.A6.A567	19	260969	24505636	4175	-0.9265	SMALL-LOSS	NONFOCAL	590	Too-Many
TCGA.SS.A7HO	19	260969	24505636	4202	-0.8786	SMALL-LOSS	NONFOCAL	590	Too-Many
TCGA.CK.5912	19	260969	59095125	11533	-0.8583	SMALL-LOSS	NONFOCAL	1372	Too-Many
TCGA.A6.3808.01A	19	968368	1567456	216	-1.2418	SMALL-LOSS	NONFOCAL	29	"ABCA7,ADAMTSL5,APC2,ARID3A,ATP5D,C19orf24,C19orf25,C19orf26,CIRBP,CNN2,DAZAP1,EFNA2,GAMT,GPX4,GRIN3B,HMHA1,MEX3D,MIDN,MUM1,NDUFS7,PCSK4,PLK5,POLR2E,REEP6,RPS15,SBNO2,STK11,TMEM259,WDR18"
TCGA.F4.6461	19	998125	1837060	76	-0.9259	SMALL-LOSS	NONFOCAL	33	"ABCA7,ADAMTSL5,APC2,ATP5D,ATP8B3,C19orf24,C19orf25,C19orf26,CIRBP,CNN2,DAZAP1,EFNA2,GAMT,GPX4,GRIN3B,HMHA1,MBD3,MEX3D,MIDN,MUM1,NDUFS7,ONECUT3,PCSK4,PLK5,POLR2E,REEP6,REXO1,RPS15,SBNO2,STK11,TCF3,TMEM259,UQCR11"
TCGA.T9.A92H	19	1022780	1518200	46	-1.0062	SMALL-LOSS	NONFOCAL	23	"ABCA7,ADAMTSL5,APC2,ATP5D,C19orf24,C19orf25,C19orf26,CIRBP,CNN2,DAZAP1,EFNA2,GAMT,GPX4,HMHA1,MIDN,MUM1,NDUFS7,PCSK4,POLR2E,REEP6,RPS15,SBNO2,STK11"
TCGA.AA.3556	19	1058175	1580188	48	-0.5944	SMALL-LOSS	NONFOCAL	25	"ABCA7,ADAMTSL5,APC2,ATP5D,C19orf24,C19orf25,C19orf26,CIRBP,DAZAP1,EFNA2,GAMT,GPX4,HMHA1,MBD3,MEX3D,MIDN,MUM1,NDUFS7,PCSK4,PLK5,POLR2E,REEP6,RPS15,SBNO2,STK11"
TCGA.AA.A00N.01A	19	1369222	2813072	338	-0.5519	SMALL-LOSS	NONFOCAL	47	"ABHD17A,ADAMTSL5,ADAT3,AMH,AP3D1,APC2,ATP8B3,BTBD2,C19orf25,C19orf35,CSNK1G2,DAZAP1,DIRAS1,DOT1L,GADD45B,GAMT,GNG7,IZUMO4,JSRP1,KLF16,LINGO3,LMNB2,LSM7,MBD3,MEX3D,MKNK2,MOB3A,MUM1,NDUFS7,OAZ1,ONECUT3,PCSK4,PLEKHJ1,PLK5,REEP6,REXO1,RPS15,SCAMP4,SF3A2,SGTA,SLC39A3,SPPL2B,TCF3,THOP1,TIMM13,TMPRSS9,UQCR11"
TCGA.A6.3808.01A	19	1825814	3765117	408	-0.5737	SMALL-LOSS	NONFOCAL	57	"ABHD17A,ADAT3,AES,AMH,AP3D1,APBA3,BTBD2,C19orf35,C19orf71,CACTIN,CELF5,CSNK1G2,DIRAS1,DOHH,DOT1L,FZR1,GADD45B,GIPC3,GNA11,GNA15,GNG7,HMG20B,IZUMO4,JSRP1,KLF16,LINGO3,LMNB2,LSM7,MFSD12,MKNK2,MOB3A,MRPL54,NCLN,NFIC,OAZ1,PIP5K1C,PLEKHJ1,REXO1,S1PR4,SCAMP4,SF3A2,SGTA,SLC39A3,SMIM24,SPPL2B,TBXA2R,THOP1,TIMM13,TJP3,TLE2,TLE6,TMPRSS9,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77"
TCGA.AA.A02E.01A	19	2039600	6828053	570	-0.5457	SMALL-LOSS	NONFOCAL	129	Too-Many
TCGA.DC.4749	19	2283139	5766089	489	-0.6624	SMALL-LOSS	NONFOCAL	86	"AES,ANKRD24,APBA3,ARRDC5,ATCAY,C19orf70,C19orf71,CACTIN,CATSPERD,CCDC94,CELF5,CHAF1A,CREB3L3,DAPK3,DIRAS1,DOHH,DPP9,DPP9-AS1,EBI3,EEF2,FEM1A,FSD1,FZR1,GADD45B,GIPC3,GNA11,GNA15,GNG7,HDGFRP2,HMG20B,HSD11B1L,KDM4B,LINGO3,LMNB2,LONP1,LRG1,LSM7,MAP2K2,MATK,MFSD12,MPND,MRPL54,MYDGF,NCLN,NFIC,NMRK2,PIAS4,PIP5K1C,PLIN3,PLIN4,PLIN5,PTPRS,RAX2,RPL36,S1PR4,SAFB,SAFB2,SEMA6B,SGTA,SH3GL1,SHD,SIRT6,SLC39A3,SMIM24,SPPL2B,STAP2,TBXA2R,THOP1,TICAM1,TIMM13,TJP3,TLE2,TLE6,TMIGD2,TMPRSS9,TNFAIP8L1,UBXN6,UHRF1,ZBTB7A,ZFR2,ZNF554,ZNF555,ZNF556,ZNF57,ZNF77,ZNRF4"
TCGA.G4.6322	19	4384673	5041177	88	-1.0054	SMALL-LOSS	NONFOCAL	18	"ARRDC5,CHAF1A,DPP9,DPP9-AS1,FEM1A,HDGFRP2,KDM4B,LRG1,MYDGF,PLIN3,PLIN4,PLIN5,SEMA6B,SH3GL1,TICAM1,TNFAIP8L1,UBXN6,UHRF1"
TCGA.AA.A00N.01A	19	6361544	6824997	135	-0.5347	SMALL-LOSS	NONFOCAL	18	"ALKBH7,C3,CD70,CLPP,CRB3,DENND1C,GPR108,GTF2F1,KHSRP,PSPN,SH2D3A,SLC25A23,SLC25A41,TNFSF14,TNFSF9,TRIP10,TUBB4A,VAV1"
TCGA.DC.4749	19	7561995	13680763	1061	-0.6128	SMALL-LOSS	NONFOCAL	182	Too-Many
TCGA.DY.A1DF	19	7654987	10338675	514	-0.582	SMALL-LOSS	NONFOCAL	75	"ACTL9,ADAMTS10,ANGPTL4,ANGPTL6,C19orf66,CAMSAP3,CCL25,CD209,CD320,CERS4,CLEC4G,CLEC4M,COL5A3,CTXN1,DNMT1,EIF3G,ELAVL1,EVI5L,FBN3,FBXL12,FCER2,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L1,MCEMP1,MUC16,MYO1F,NDUFA7,OLFM2,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,P2RY11,PCP2,PET100,PIN1,PPAN,PPAN-P2RY11,PRAM1,PRR36,RAB11B,RDH8,RETN,RPS28,S1PR2,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,UBL5,XAB2,ZNF121,ZNF177,ZNF266,ZNF317,ZNF414,ZNF426,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846"
TCGA.EI.6513	19	7868714	8986528	167	-0.9332	SMALL-LOSS	NONFOCAL	29	"ACTL9,ADAMTS10,ANGPTL4,CCL25,CD320,CERS4,CTXN1,ELAVL1,EVI5L,FBN3,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L1,MUC16,MYO1F,NDUFA7,OR2Z1,PRAM1,PRR36,RAB11B,RPS28,SNAPC2,TGFBR3L,TIMM44,ZNF414,ZNF558"
TCGA.AG.3909.01A	19	7911381	8145895	36	-0.5443	SMALL-LOSS	NONFOCAL	11	"CCL25,CTXN1,ELAVL1,EVI5L,FBN3,LRRC8E,MAP2K7,PRR36,SNAPC2,TGFBR3L,TIMM44"
TCGA.AA.3549	19	10139338	11092138	114	-0.5162	SMALL-LOSS	NONFOCAL	35	"ANGPTL6,AP1M2,ATG4D,C19orf38,C19orf52,C19orf66,CARM1,CDC37,CDKN2D,DNM2,DNMT1,EIF3G,FDX1L,ICAM1,ICAM3,ICAM4,ICAM5,ILF3,KEAP1,KRI1,MRPL4,P2RY11,PDE4A,PPAN,PPAN-P2RY11,QTRT1,RAVER1,S1PR2,S1PR5,SLC44A2,SMARCA4,TMED1,TYK2,YIPF2,ZGLP1"
TCGA.AA.A00O.01A	19	11101788	14640302	546	-0.7474	SMALL-LOSS	NONFOCAL	102	Too-Many
TCGA.AA.A00N.01A	19	11356207	11708353	104	-0.5311	SMALL-LOSS	NONFOCAL	18	"ACP5,CCDC151,CCDC159,CNN1,DOCK6,ECSIT,ELAVL3,ELOF1,EPOR,LPPR2,PRKCSH,RAB3D,RGL3,SWSAP1,TMEM205,TSPAN16,ZNF627,ZNF653"
TCGA.AG.3909.01A	19	11453439	13216052	325	-0.6629	SMALL-LOSS	NONFOCAL	65	"ACP5,ASNA1,BEST2,C19orf43,CALR,CCDC151,CCDC159,CNN1,DAND5,DHPS,DNASE2,ECSIT,ELAVL3,ELOF1,EPOR,FARSA,FBXW9,GADD45GIP1,GCDH,HOOK2,JUNB,KLF1,LPPR2,LYL1,MAN2B1,MAST1,NFIX,PRDX2,PRKCSH,RAD23A,RGL3,RNASEH2A,RTBDN,SWSAP1,SYCE2,TMEM205,TNPO2,TRMT1,WDR83,WDR83OS,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF627,ZNF653,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.EI.6513	19	11609868	12586384	185	-0.811	SMALL-LOSS	NONFOCAL	26	"ACP5,CNN1,ECSIT,ELOF1,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF491,ZNF563,ZNF625,ZNF627,ZNF653,ZNF69,ZNF700,ZNF709,ZNF763,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.A6.3808.01A	19	11685778	12126438	43	-1.115	SMALL-LOSS	NONFOCAL	11	"ACP5,ZNF433,ZNF439,ZNF440,ZNF441,ZNF491,ZNF627,ZNF69,ZNF700,ZNF763,ZNF823"
TCGA.AA.A00N.01A	19	11725390	12776478	124	-1.2848	SMALL-LOSS	NONFOCAL	25	"MAN2B1,ZNF136,ZNF20,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF627,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878"
TCGA.DY.A1DF	19	11763576	15087334	561	-0.601	SMALL-LOSS	NONFOCAL	91	"ADGRE2,ADGRE3,ADGRE5,ADGRL1,ASF1B,ASNA1,BEST2,C19orf43,C19orf53,C19orf57,C19orf67,CACNA1A,CALR,CC2D1A,CCDC130,CLEC17A,DAND5,DCAF15,DDX39A,DHPS,DNAJB1,DNASE2,FARSA,FBXW9,GADD45GIP1,GCDH,GIPC1,HOOK2,IER2,IL27RA,JUNB,KLF1,LOC113230,LYL1,MAN2B1,MAST1,MRI1,NACC1,NANOS3,NDUFB7,NFIX,OR7A10,OR7A17,OR7A5,OR7C1,OR7C2,PALM3,PKN1,PODNL1,PRDX2,PRKACA,PTGER1,RAD23A,RFX1,RLN3,RNASEH2A,RTBDN,SAMD1,SLC1A6,STX10,SYCE2,TECR,TNPO2,TRMT1,WDR83,WDR83OS,ZNF136,ZNF20,ZNF333,ZNF433,ZNF439,ZNF44,ZNF440,ZNF441,ZNF442,ZNF443,ZNF490,ZNF491,ZNF563,ZNF564,ZNF625,ZNF69,ZNF700,ZNF709,ZNF763,ZNF791,ZNF799,ZNF823,ZNF844,ZNF878,ZSWIM4"
TCGA.AA.A00N.01A	19	12777328	13427899	195	-0.6659	SMALL-LOSS	NONFOCAL	31	"ASNA1,BEST2,C19orf43,CACNA1A,CALR,DAND5,DHPS,DNASE2,FARSA,FBXW9,GADD45GIP1,GCDH,HOOK2,IER2,JUNB,KLF1,LYL1,MAN2B1,MAST1,NACC1,NFIX,PRDX2,RAD23A,RNASEH2A,RTBDN,STX10,SYCE2,TNPO2,TRMT1,WDR83,WDR83OS"
TCGA.EI.6513	19	14170422	14926538	103	-0.8698	SMALL-LOSS	NONFOCAL	19	"ADGRE2,ADGRE3,ADGRE5,ADGRL1,ASF1B,C19orf67,CLEC17A,DDX39A,DNAJB1,GIPC1,LOC113230,NDUFB7,OR7C1,PKN1,PRKACA,PTGER1,SAMD1,TECR,ZNF333"
TCGA.EI.6513	19	15824070	24503984	1635	-0.8792	SMALL-LOSS	NONFOCAL	147	Too-Many
TCGA.DY.A1DF	19	15934598	19186704	570	-0.6647	SMALL-LOSS	NONFOCAL	90	"ABHD8,ANKLE1,ANO8,AP1M1,ARMC6,ARRDC2,B3GNT3,BABAM1,BST2,C19orf44,C19orf60,CALR3,CCDC124,CERS1,CHERP,CIB3,COLGALT1,COMP,COPE,CPAMD8,CRLF1,CRTC1,CYP4F11,CYP4F2,DDA1,DDX49,ELL,EPS15L1,F2RL3,FAM129C,FAM32A,FCHO1,FKBP8,GDF1,GDF15,GTPBP3,HAUS8,HOMER3,HSH2D,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLF2,KLHL26,KXD1,LOC102724279,LRRC25,LSM4,MAP1S,MAST3,MED26,MPV17L2,MRPL34,MVB12A,MYO9B,NR2F6,NWD1,NXNL1,OCEL1,OR10H4,PDE4C,PGLS,PGPEP1,PIK3R2,PLVAP,RAB3A,RAB8A,RPL18A,SIN3B,SLC25A42,SLC27A1,SLC35E1,SLC5A5,SMIM7,SSBP4,SUGP2,TMEM221,TMEM38A,TMEM59L,TPM4,UBA52,UNC13A,UPF1,USE1,USHBP1"
TCGA.DC.4749	19	16296179	24505636	1490	-0.5607	SMALL-LOSS	NONFOCAL	135	Too-Many
TCGA.EF.5830	19	16754779	17680100	167	-0.806	SMALL-LOSS	NONFOCAL	28	"ABHD8,ANKLE1,ANO8,BABAM1,BST2,COLGALT1,CPAMD8,DDA1,F2RL3,FAM129C,GTPBP3,HAUS8,MRPL34,MVB12A,MYO9B,NR2F6,NWD1,NXNL1,OCEL1,PGLS,PLVAP,SIN3B,SLC27A1,SMIM7,TMEM221,TMEM38A,USE1,USHBP1"
TCGA.AG.A01W.01A	19	17309368	17510926	40	-0.5899	SMALL-LOSS	NONFOCAL	13	"ABHD8,ANKLE1,ANO8,BABAM1,DDA1,GTPBP3,MRPL34,MYO9B,NR2F6,OCEL1,PLVAP,USE1,USHBP1"
TCGA.AA.A02F.01A	19	17339565	24310438	551	-0.9535	SMALL-LOSS	NONFOCAL	117	Too-Many
TCGA.F5.6810	19	17546709	20632399	462	-0.5518	SMALL-LOSS	NONFOCAL	79	"ARMC6,ARRDC2,ATP13A1,B3GNT3,C19orf60,CCDC124,CERS1,CILP2,COLGALT1,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FAM129C,FCHO1,FKBP8,GATAD2A,GDF1,GDF15,GMIP,HAPLN4,HOMER3,IFI30,IL12RB1,INSL3,ISYNA1,JAK3,JUND,KCNN1,KIAA1683,KLHL26,KXD1,LPAR2,LRRC25,LSM4,MAP1S,MAST3,MAU2,MEF2B,MEF2BNB,MEF2BNB-MEF2B,MPV17L2,NCAN,NDUFA13,NR2C2AP,NXNL1,PBX4,PDE4C,PGLS,PGPEP1,PIK3R2,RAB3A,RFXANK,RPL18A,SLC25A42,SLC27A1,SLC5A5,SSBP4,SUGP1,SUGP2,TM6SF2,TMEM161A,TMEM221,TMEM59L,TSSK6,UBA52,UNC13A,UPF1,YJEFN3,ZNF101,ZNF14,ZNF253,ZNF486,ZNF506,ZNF682,ZNF90,ZNF93"
TCGA.D5.6541	19	18615269	19243174	76	-0.5338	SMALL-LOSS	NONFOCAL	20	"ARMC6,C19orf60,CERS1,COMP,COPE,CRLF1,CRTC1,DDX49,ELL,FKBP8,GDF1,HOMER3,KLHL26,KXD1,SLC25A42,SUGP2,TMEM161A,TMEM59L,UBA52,UPF1"
TCGA.AA.3556	19	20242273	24505636	850	-0.8068	SMALL-LOSS	NONFOCAL	26	"ZNF100,ZNF208,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF486,ZNF492,ZNF493,ZNF626,ZNF675,ZNF676,ZNF681,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF91,ZNF98,ZNF99"
TCGA.D5.6541	19	20365514	22529564	408	-0.5396	SMALL-LOSS	NONFOCAL	15	"ZNF100,ZNF208,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF493,ZNF626,ZNF676,ZNF708,ZNF714,ZNF729,ZNF737,ZNF85"
TCGA.DY.A1DG	19	20681367	24505636	795	-0.5726	SMALL-LOSS	NONFOCAL	25	"ZNF100,ZNF208,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF492,ZNF493,ZNF626,ZNF675,ZNF676,ZNF681,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF91,ZNF98,ZNF99"
TCGA.DY.A1DF	19	20708066	22270215	314	-0.6376	SMALL-LOSS	NONFOCAL	13	"ZNF100,ZNF208,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF493,ZNF626,ZNF708,ZNF714,ZNF737,ZNF85"
TCGA.F5.6810	19	20721233	27960005	793	-0.5794	SMALL-LOSS	NONFOCAL	25	"ZNF100,ZNF208,ZNF254,ZNF257,ZNF429,ZNF43,ZNF430,ZNF431,ZNF492,ZNF493,ZNF626,ZNF675,ZNF676,ZNF681,ZNF708,ZNF714,ZNF726,ZNF728,ZNF729,ZNF730,ZNF737,ZNF85,ZNF91,ZNF98,ZNF99"
TCGA.AA.3952	19	20997795	59095125	8087	-0.6146	SMALL-LOSS	NONFOCAL	805	Too-Many
TCGA.DY.A1DF	19	22600545	29869767	1080	-0.6065	SMALL-LOSS	NONFOCAL	11	"UQCRFS1,ZNF254,ZNF492,ZNF675,ZNF681,ZNF726,ZNF728,ZNF730,ZNF91,ZNF98,ZNF99"
TCGA.AA.A00N.01A	19	23542295	30314514	54	-0.8099	SMALL-LOSS	NONFOCAL	11	"C19orf12,CCNE1,PLEKHF1,POP4,UQCRFS1,VSTM2B,ZNF254,ZNF675,ZNF681,ZNF726,ZNF91"
TCGA.A6.5661	19	28549784	59095125	7213	-0.5366	SMALL-LOSS	NONFOCAL	782	Too-Many
TCGA.DY.A1DF	19	33569499	35410797	509	-0.6549	SMALL-LOSS	NONFOCAL	19	"CEBPA,CEBPG,CHST8,GPATCH1,GPI,KCTD15,KIAA0355,LRP3,LSM14A,PDCD2L,PEPD,SCGB2B2,SLC7A10,UBA2,WDR88,WTIP,ZNF181,ZNF302,ZNF599"
TCGA.D5.6533	19	33789396	35338388	430	-0.6661	SMALL-LOSS	NONFOCAL	15	"CEBPA,CEBPG,CHST8,GPI,KCTD15,KIAA0355,LSM14A,PDCD2L,PEPD,SCGB2B2,UBA2,WTIP,ZNF181,ZNF302,ZNF599"
TCGA.AG.3909.01A	19	35085043	35651562	65	-0.6275	SMALL-LOSS	NONFOCAL	14	"FXYD1,FXYD3,FXYD5,FXYD7,GRAMD1A,HPN,LGI4,SCGB2B2,SCN1B,ZNF181,ZNF30,ZNF302,ZNF599,ZNF792"
TCGA.AA.A00N.01A	19	35249911	35849756	107	-0.5432	SMALL-LOSS	NONFOCAL	19	"CD22,FAM187B,FFAR1,FFAR3,FXYD1,FXYD3,FXYD5,FXYD7,GRAMD1A,HAMP,HPN,LGI4,LSR,MAG,SCN1B,USF2,ZNF30,ZNF599,ZNF792"
TCGA.AA.A00N.01A	19	36120390	36275026	77	-0.6278	SMALL-LOSS	NONFOCAL	13	"ARHGAP33,COX6B1,ETV2,HSPB6,IGFLR1,KMT2B,LIN37,PROSER3,PSENEN,RBM42,U2AF1L4,UPK1A,ZBTB32"
TCGA.EI.6883	19	36216055	53344700	3254	-0.6727	SMALL-LOSS	NONFOCAL	520	Too-Many
TCGA.AA.A00N.01A	19	36326538	36572308	94	-0.6399	SMALL-LOSS	NONFOCAL	14	"ALKBH6,APLP1,CLIP3,HCST,KIRREL2,LOC101927572,LRFN3,NFKBID,NPHS1,SDHAF1,SYNE4,THAP8,TYROBP,WDR62"
TCGA.AG.3909.01A	19	36362467	36572308	61	-0.7032	SMALL-LOSS	NONFOCAL	12	"ALKBH6,APLP1,CLIP3,HCST,LOC101927572,LRFN3,NFKBID,SDHAF1,SYNE4,THAP8,TYROBP,WDR62"
TCGA.AA.A00N.01A	19	36604597	37203636	58	-0.7462	SMALL-LOSS	NONFOCAL	15	"CAPNS1,COX7A1,OVOL3,POLR2I,TBCB,ZFP14,ZFP82,ZNF146,ZNF260,ZNF382,ZNF461,ZNF529,ZNF565,ZNF566,ZNF567"
TCGA.DY.A1DF	19	36666166	42833649	998	-0.5935	SMALL-LOSS	NONFOCAL	161	Too-Many
TCGA.EI.6511	19	36901009	59095125	4732	-0.5977	SMALL-LOSS	NONFOCAL	680	Too-Many
TCGA.AG.3909.01A	19	39281288	39668278	75	-0.6619	SMALL-LOSS	NONFOCAL	14	"CCER2,ECH1,FBXO17,FBXO27,HNRNPL,LGALS4,LGALS7B,MRPS12,NFKBIB,PAK4,PAPL,RINL,SARS2,SIRT2"
TCGA.AM.5820	19	40309521	41077500	104	-0.6013	SMALL-LOSS	NONFOCAL	19	"AKT2,BLVRB,C19orf47,CNTD2,DYRK1B,FBL,FCGBP,HIPK4,MAP3K10,PLD3,PRX,PSMC4,SERTAD1,SERTAD3,SPTBN4,TTC9B,ZNF546,ZNF780A,ZNF780B"
TCGA.AG.3909.01A	19	40728930	41088209	72	-0.5573	SMALL-LOSS	NONFOCAL	11	"AKT2,BLVRB,C19orf47,CNTD2,HIPK4,PLD3,PRX,SERTAD1,SERTAD3,SHKBP1,SPTBN4"
TCGA.AG.3909.01A	19	42582712	42937076	90	-0.5872	SMALL-LOSS	NONFOCAL	14	"CIC,CNFN,CXCL17,DEDD2,ERF,GSK3A,LIPE,MEGF8,PAFAH1B3,POU2F2,PRR19,TMEM145,ZNF526,ZNF574"
TCGA.G4.6322	19	42676480	44030997	163	-1.0214	SMALL-LOSS	NONFOCAL	29	"CD177,CEACAM1,CEACAM8,CIC,CNFN,CXCL17,DEDD2,ERF,ETHE1,GSK3A,LIPE,LYPD3,MEGF8,PAFAH1B3,PHLDB3,PRR19,PSG1,PSG11,PSG2,PSG3,PSG4,PSG5,PSG6,PSG7,PSG8,PSG9,TEX101,TMEM145,ZNF526"
TCGA.CM.5341	19	42706309	59095125	3756	-0.5536	SMALL-LOSS	NONFOCAL	531	Too-Many
TCGA.EF.5830	19	43412531	46007333	579	-0.7907	SMALL-LOSS	NONFOCAL	79	"APOC1,APOC2,APOC4,APOE,BCAM,BCL3,BLOC1S3,CADM4,CBLC,CD177,CD3EAP,CEACAM16,CEACAM19,CEACAM20,CKM,CLASRP,CLPTM1,ERCC1,ERCC2,ETHE1,EXOC3L2,FOSB,GEMIN7,IGSF23,IRGC,IRGQ,KCNN4,KLC3,LYPD3,LYPD5,MARK4,NKPD1,PHLDB3,PINLYP,PLAUR,PPM1N,PPP1R13L,PPP1R37,PSG11,PSG2,PSG4,PSG5,PSG6,PSG7,PSG9,PVR,PVRL2,RELB,RTN2,SMG9,SRRM5,TEX101,TOMM40,TRAPPC6A,XRCC1,ZNF112,ZNF155,ZNF180,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF296,ZNF404,ZNF428,ZNF45,ZNF575,ZNF576"
TCGA.DY.A1DF	19	43556842	45707916	516	-0.6116	SMALL-LOSS	NONFOCAL	65	"APOC1,APOC2,APOC4,APOE,BCAM,BCL3,BLOC1S3,CADM4,CBLC,CD177,CEACAM16,CEACAM19,CEACAM20,CLASRP,CLPTM1,ETHE1,GEMIN7,IGSF23,IRGC,IRGQ,KCNN4,LYPD3,LYPD5,NKPD1,PHLDB3,PINLYP,PLAUR,PPP1R37,PSG2,PSG4,PSG5,PSG9,PVR,PVRL2,RELB,SMG9,SRRM5,TEX101,TOMM40,TRAPPC6A,XRCC1,ZNF112,ZNF155,ZNF180,ZNF221,ZNF222,ZNF223,ZNF224,ZNF225,ZNF226,ZNF227,ZNF229,ZNF230,ZNF233,ZNF234,ZNF235,ZNF283,ZNF284,ZNF285,ZNF296,ZNF404,ZNF428,ZNF45,ZNF575,ZNF576"
TCGA.AA.A00N.01A	19	43998803	44156339	46	-0.63	SMALL-LOSS	NONFOCAL	11	"CADM4,ETHE1,IRGQ,PHLDB3,PINLYP,PLAUR,SRRM5,XRCC1,ZNF428,ZNF575,ZNF576"
TCGA.AA.A00N.01A	19	45389128	46321220	255	-0.5637	SMALL-LOSS	NONFOCAL	39	"APOC1,APOC2,APOC4,APOE,BLOC1S3,CD3EAP,CKM,CLASRP,CLPTM1,DMPK,DMWD,EML2,ERCC1,ERCC2,EXOC3L2,FBXO46,FOSB,GEMIN7,GIPR,GPR4,KLC3,MARK4,NKPD1,OPA3,PPM1N,PPP1R13L,PPP1R37,PVRL2,QPCTL,RELB,RSPH6A,RTN2,SIX5,SNRPD2,SYMPK,TOMM40,TRAPPC6A,VASP,ZNF296"
TCGA.F4.6461	19	45523458	45933492	62	-0.5952	SMALL-LOSS	NONFOCAL	16	"BLOC1S3,CD3EAP,CKM,CLASRP,ERCC1,ERCC2,EXOC3L2,GEMIN7,KLC3,MARK4,NKPD1,PPP1R13L,PPP1R37,RELB,TRAPPC6A,ZNF296"
TCGA.AG.3732	19	45681133	51972426	1168	-0.6539	SMALL-LOSS	NONFOCAL	222	Too-Many
TCGA.DY.A1DF	19	46374556	47103140	137	-0.5734	SMALL-LOSS	NONFOCAL	17	"CCDC61,CCDC8,FOXA3,HIF3A,IGFL1,IGFL2,IGFL3,IGFL4,IRF2BP1,MYPOP,NANOS2,NOVA2,PGLYRP1,PNMAL1,PNMAL2,PPP5C,PPP5D1"
TCGA.AA.3549	19	46782576	47877190	142	-0.6722	SMALL-LOSS	NONFOCAL	26	"AP2S1,ARHGAP35,BBC3,C5AR1,C5AR2,CALM3,CCDC8,CCDC9,DACT3,DHX34,FKRP,GNG8,HIF3A,INAFM1,NPAS1,PNMAL1,PNMAL2,PPP5C,PPP5D1,PRKD2,PTGIR,SAE1,SLC1A5,STRN4,TMEM160,ZC3H4"
TCGA.D5.6536	19	47066643	48312826	163	-0.9173	SMALL-LOSS	NONFOCAL	31	"AP2S1,ARHGAP35,BBC3,C5AR1,C5AR2,CALM3,CCDC9,DACT3,DHX34,EHD2,FKRP,GLTSCR1,GLTSCR2,GNG8,INAFM1,KPTN,MEIS3,NAPA,NPAS1,PPP5D1,PRKD2,PTGIR,SAE1,SEPW1,SLC1A5,SLC8A2,STRN4,TMEM160,TPRX1,ZC3H4,ZNF541"
TCGA.AA.A010.01A	19	47104602	47778129	112	-0.7379	SMALL-LOSS	NONFOCAL	16	"AP2S1,ARHGAP35,BBC3,CALM3,CCDC9,DACT3,FKRP,GNG8,NPAS1,PRKD2,PTGIR,SAE1,SLC1A5,STRN4,TMEM160,ZC3H4"
TCGA.DY.A1DF	19	47112739	48124651	113	-0.6728	SMALL-LOSS	NONFOCAL	26	"AP2S1,ARHGAP35,BBC3,C5AR1,C5AR2,CALM3,CCDC9,DACT3,DHX34,FKRP,GLTSCR1,GNG8,INAFM1,KPTN,MEIS3,NAPA,NPAS1,PRKD2,PTGIR,SAE1,SLC1A5,SLC8A2,STRN4,TMEM160,ZC3H4,ZNF541"
TCGA.EF.5830	19	47518883	59095125	2888	-0.8429	SMALL-LOSS	NONFOCAL	395	Too-Many
TCGA.AG.A00H.01A	19	47535495	50063154	537	-0.595	SMALL-LOSS	NONFOCAL	96	"ALDH16A1,BAX,BBC3,BCAT2,BSPH1,C19orf68,C19orf73,C5AR1,C5AR2,CA11,CABP5,CARD8,CCDC114,CCDC155,CCDC9,CD37,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,CRX,CYTH2,DBP,DHDH,DHX34,DKKL1,EHD2,ELSPBP1,EMP3,FAM83E,FCGRT,FGF21,FLT3LG,FTL,FUT1,FUT2,GFY,GLTSCR1,GLTSCR2,GRIN2D,GRWD1,GYS1,HRC,HSD17B14,INAFM1,IZUMO1,KCNA7,KCNJ14,KDELR1,KPTN,LHB,LIG1,LIN7B,LMTK3,MAMSTR,MEIS3,NAPA,NOSIP,NPAS1,NTF4,NTN5,NUCB1,PIH1D1,PLA2G4C,PLEKHA4,PPFIA3,PPP1R15A,PTH2,RASIP1,RCN3,RPL13A,RPL18,RPS11,RUVBL2,SAE1,SEPW1,SLC17A7,SLC6A16,SLC8A2,SNRNP70,SPACA4,SPHK2,SULT2A1,SULT2B1,SYNGR4,TEAD2,TMEM143,TMEM160,TPRX1,TRPM4,TULP2,ZC3H4,ZNF114,ZNF541"
TCGA.D5.6533	19	47658319	59095125	2875	-0.6607	SMALL-LOSS	NONFOCAL	392	Too-Many
TCGA.DY.A1DF	19	48174392	49724085	329	-0.6407	SMALL-LOSS	NONFOCAL	65	"BAX,BCAT2,BSPH1,C19orf68,C19orf73,CA11,CABP5,CARD8,CCDC114,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,CRX,CYTH2,DBP,DHDH,EHD2,ELSPBP1,EMP3,FAM83E,FGF21,FTL,FUT1,FUT2,GLTSCR1,GLTSCR2,GRIN2D,GRWD1,GYS1,HRC,HSD17B14,IZUMO1,KCNA7,KCNJ14,KDELR1,LHB,LIG1,LIN7B,LMTK3,MAMSTR,NTF4,NTN5,NUCB1,PLA2G4C,PLEKHA4,PPFIA3,PPP1R15A,RASIP1,RPL18,RUVBL2,SEPW1,SNRNP70,SPACA4,SPHK2,SULT2A1,SULT2B1,SYNGR4,TMEM143,TPRX1,TRPM4,TULP2,ZNF114"
TCGA.AF.3914.01A	19	48964985	49244591	77	-0.8061	SMALL-LOSS	NONFOCAL	15	"CA11,CYTH2,DBP,FAM83E,FUT2,IZUMO1,KCNJ14,LMTK3,MAMSTR,NTN5,RASIP1,RPL18,SPACA4,SPHK2,SULT2B1"
TCGA.AA.A01Q.01A	19	49110208	49260155	53	-0.6593	SMALL-LOSS	NONFOCAL	13	"CA11,DBP,FAM83E,FGF21,FUT1,FUT2,IZUMO1,MAMSTR,NTN5,RASIP1,RPL18,SPACA4,SPHK2"
TCGA.AA.A00N.01A	19	49119953	49260155	52	-0.9142	SMALL-LOSS	NONFOCAL	11	"CA11,DBP,FGF21,FUT1,FUT2,IZUMO1,MAMSTR,NTN5,RASIP1,RPL18,SPHK2"
TCGA.G4.6317	19	49175963	49724085	73	-0.8494	SMALL-LOSS	NONFOCAL	33	"BAX,BCAT2,C19orf73,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,DHDH,FGF21,FTL,FUT1,FUT2,GYS1,HRC,HSD17B14,IZUMO1,KCNA7,LHB,LIN7B,MAMSTR,NTF4,NTN5,NUCB1,PLEKHA4,PPFIA3,PPP1R15A,RASIP1,RUVBL2,SNRNP70,TRPM4,TULP2"
TCGA.AA.A00N.01A	19	49442657	49705183	110	-0.5844	SMALL-LOSS	NONFOCAL	20	"BAX,C19orf73,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,DHDH,FTL,GYS1,HRC,KCNA7,LHB,LIN7B,NTF4,PPFIA3,RUVBL2,SNRNP70,TRPM4"
TCGA.AF.3914.01A	19	49512982	49621911	33	-0.7281	SMALL-LOSS	NONFOCAL	13	"C19orf73,CGB,CGB1,CGB2,CGB5,CGB7,CGB8,KCNA7,LHB,LIN7B,NTF4,RUVBL2,SNRNP70"
TCGA.AA.A01Q.01A	19	49539893	49675217	54	-0.5537	SMALL-LOSS	NONFOCAL	12	"C19orf73,CGB1,CGB5,CGB7,CGB8,HRC,KCNA7,LIN7B,NTF4,PPFIA3,SNRNP70,TRPM4"
TCGA.AG.3909.01A	19	49838743	50040271	88	-0.6016	SMALL-LOSS	NONFOCAL	14	"ALDH16A1,CCDC155,CD37,DKKL1,FCGRT,FLT3LG,GFY,PIH1D1,PTH2,RCN3,RPL13A,RPS11,SLC17A7,TEAD2"
TCGA.AA.A00N.01A	19	49838743	50412769	260	-0.5304	SMALL-LOSS	NONFOCAL	34	"ADM5,AKT1S1,ALDH16A1,AP2A1,BCL2L12,CCDC155,CD37,CPT1C,DKKL1,FCGRT,FLT3LG,FUZ,GFY,IL4I1,IRF3,MED25,NOSIP,NUP62,PIH1D1,PNKP,PRMT1,PRR12,PRRG2,PTH2,PTOV1,RCN3,RPL13A,RPS11,RRAS,SCAF1,SLC17A7,TBC1D17,TEAD2,TSKS"
TCGA.AG.A00H.01A	19	50093105	54705314	747	-0.6187	SMALL-LOSS	NONFOCAL	145	Too-Many
TCGA.DY.A1DF	19	50135405	50778628	109	-0.6704	SMALL-LOSS	NONFOCAL	23	"ADM5,AKT1S1,AP2A1,ATF5,BCL2L12,CPT1C,FUZ,IL4I1,IRF3,IZUMO2,MED25,MYH14,NUP62,PNKP,PRMT1,PTOV1,RRAS,SCAF1,SIGLEC11,TBC1D17,TSKS,VRK3,ZNF473"
TCGA.AG.3909.01A	19	50245094	50463357	76	-0.6101	SMALL-LOSS	NONFOCAL	12	"AKT1S1,AP2A1,ATF5,FUZ,IL4I1,MED25,NUP62,PNKP,PTOV1,SIGLEC11,TBC1D17,TSKS"
TCGA.DY.A1DF	19	51925518	52870051	330	-0.5785	SMALL-LOSS	NONFOCAL	25	"CEACAM18,FPR1,FPR2,FPR3,HAS1,PPP2R1A,SIGLEC12,SIGLEC14,SIGLEC5,SIGLEC6,SIGLEC8,ZNF175,ZNF350,ZNF432,ZNF480,ZNF577,ZNF610,ZNF613,ZNF614,ZNF615,ZNF616,ZNF649,ZNF766,ZNF836,ZNF841"
TCGA.AG.3909.01A	19	52772779	53304034	49	-0.6647	SMALL-LOSS	NONFOCAL	13	"ZNF28,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF701,ZNF766,ZNF808,ZNF83,ZNF880"
TCGA.A6.3808.01A	19	52786491	54318105	167	-0.596	SMALL-LOSS	NONFOCAL	34	"BIRC8,DPRX,ERVV-1,ERVV-2,NLRP12,VN1R2,VN1R4,ZNF160,ZNF28,ZNF320,ZNF331,ZNF347,ZNF415,ZNF468,ZNF480,ZNF528,ZNF534,ZNF578,ZNF600,ZNF610,ZNF611,ZNF665,ZNF677,ZNF701,ZNF761,ZNF765,ZNF766,ZNF808,ZNF813,ZNF816,ZNF816-ZNF321P,ZNF83,ZNF845,ZNF880"
TCGA.DY.A1DF	19	53041106	59095125	1618	-0.6115	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.AA.A00N.01A	19	53432172	53957867	45	-1.1903	SMALL-LOSS	NONFOCAL	15	"BIRC8,ERVV-1,ERVV-2,VN1R2,VN1R4,ZNF160,ZNF347,ZNF415,ZNF665,ZNF677,ZNF761,ZNF765,ZNF816,ZNF816-ZNF321P,ZNF845"
TCGA.AG.3893	19	55103602	59095125	1094	-0.5721	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.AG.A00H.01A	19	55365172	58477857	427	-0.6109	SMALL-LOSS	NONFOCAL	106	Too-Many
TCGA.AG.3909.01A	19	55386717	55687356	97	-0.5811	SMALL-LOSS	NONFOCAL	12	"DNAAF3,EPS8L1,FCAR,GP6,NCR1,NLRP2,NLRP7,PPP1R12C,RDH13,SYT5,TNNI3,TNNT1"
TCGA.AF.3914.01A	19	55798334	56163746	61	-0.89	SMALL-LOSS	NONFOCAL	25	"BRSK1,CCDC106,COX6B2,FAM71E2,FIZ1,IL11,ISOC2,NAT14,RPL28,SBK2,SBK3,SHISA7,SSC5D,SUV420H2,TMEM150B,TMEM190,TMEM238,UBE2S,ZNF524,ZNF579,ZNF580,ZNF581,ZNF628,ZNF784,ZNF865"
TCGA.F4.6460	19	57421773	59095125	463	-0.7966	SMALL-LOSS	NONFOCAL	63	"A1BG,AURKC,C19orf18,CHMP2A,DUXA,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,USP29,VN1R1,ZBTB45,ZIK1,ZIM3,ZNF132,ZNF134,ZNF135,ZNF154,ZNF17,ZNF211,ZNF256,ZNF264,ZNF274,ZNF304,ZNF324,ZNF324B,ZNF329,ZNF416,ZNF417,ZNF418,ZNF419,ZNF446,ZNF460,ZNF497,ZNF530,ZNF543,ZNF544,ZNF547,ZNF548,ZNF549,ZNF550,ZNF551,ZNF552,ZNF584,ZNF586,ZNF587,ZNF587B,ZNF606,ZNF671,ZNF749,ZNF772,ZNF773,ZNF776,ZNF8,ZNF805,ZNF814,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22,ZSCAN4"
TCGA.AA.3666	19	58300065	59095125	178	-0.6995	SMALL-LOSS	NONFOCAL	33	"A1BG,C19orf18,CHMP2A,MZF1,RNF225,RPS5,SLC27A5,TRIM28,UBE2M,ZBTB45,ZNF132,ZNF135,ZNF256,ZNF274,ZNF324,ZNF324B,ZNF329,ZNF417,ZNF418,ZNF446,ZNF497,ZNF544,ZNF552,ZNF584,ZNF587,ZNF587B,ZNF606,ZNF8,ZNF814,ZNF837,ZSCAN1,ZSCAN18,ZSCAN22"
TCGA.A6.3808.01A	19	58805413	59056088	47	-0.7256	SMALL-LOSS	NONFOCAL	15	"A1BG,RNF225,RPS5,SLC27A5,TRIM28,ZBTB45,ZNF132,ZNF324,ZNF324B,ZNF446,ZNF497,ZNF584,ZNF8,ZNF837,ZSCAN22"
TCGA.AA.A00O.01A	20	68282	1460306	102	-0.5986	SMALL-LOSS	NONFOCAL	30	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPB2,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.AA.A02F.01A	20	68282	18142999	815	-0.6692	SMALL-LOSS	NONFOCAL	127	Too-Many
TCGA.AG.A020	20	69407	1453456	612	-1.0171	SMALL-LOSS	NONFOCAL	29	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,FAM110A,FKBP1A,NRSN2,NSFL1C,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SLC52A3,SNPH,SOX12,SRXN1,TBC1D20,TCF15,TMEM74B,TRIB3,ZCCHC3"
TCGA.DM.A1HA	20	69407	2761097	1260	-0.9254	SMALL-LOSS	NONFOCAL	45	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FKBP1A,IDH3B,LOC388780,NOP56,NRSN2,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM74B,TRIB3,ZCCHC3,ZNF343"
TCGA.G4.6317	20	69407	3926573	1569	-0.7755	SMALL-LOSS	NONFOCAL	75	"ADAM33,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.D5.5541	20	69407	4093251	1640	-0.8551	SMALL-LOSS	NONFOCAL	75	"ADAM33,ANGPT4,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf202,C20orf27,C20orf96,CDC25B,CENPB,CPXM1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PDYN,PSMF1,PTPRA,RAD21L1,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC4A11,SLC52A3,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM239,TMEM74B,TRIB3,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.EI.6514	20	69407	8984247	3878	-0.5203	SMALL-LOSS	NONFOCAL	97	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PLCB1,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.DM.A28A	20	69407	9054904	3921	-0.7691	SMALL-LOSS	NONFOCAL	98	"ADAM33,ADRA1D,ANGPT4,AP5S1,ATRN,AVP,BMP2,C20orf141,C20orf194,C20orf196,C20orf202,C20orf27,C20orf96,CDC25B,CDS2,CENPB,CHGB,CPXM1,CRLS1,CSNK2A1,DDRGK1,DEFB125,DEFB126,DEFB127,DEFB128,DEFB129,DEFB132,EBF4,FAM110A,FASTKD5,FERMT1,FKBP1A,GFRA4,GNRH2,GPCPD1,HAO1,HSPA12B,IDH3B,ITPA,LOC388780,LRRN4,LZTS3,MAVS,MCM8,MRPS26,NOP56,NRSN2,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PLCB1,PLCB4,PRND,PRNP,PROKR2,PSMF1,PTPRA,RAD21L1,RASSF2,RBCK1,RNF24,RSPO4,SCRT2,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SLC52A3,SMOX,SNPH,SNRPB,SOX12,SPEF1,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM230,TMEM239,TMEM74B,TMX4,TRIB3,TRMT6,UBOX5,VPS16,ZCCHC3,ZNF343"
TCGA.D5.6923	20	69407	11116191	4813	-0.5183	SMALL-LOSS	NONFOCAL	105	Too-Many
TCGA.AG.3727	20	69407	11704200	5082	-0.7656	SMALL-LOSS	NONFOCAL	105	Too-Many
TCGA.AG.3574	20	69407	12282657	5297	-0.9313	SMALL-LOSS	NONFOCAL	106	Too-Many
TCGA.AD.6965	20	69407	12512323	5403	-0.6432	SMALL-LOSS	NONFOCAL	106	Too-Many
TCGA.NH.A8F7	20	69407	14111359	5969	-0.5334	SMALL-LOSS	NONFOCAL	113	Too-Many
TCGA.AA.3517	20	69407	14292608	6036	-0.8039	SMALL-LOSS	NONFOCAL	113	Too-Many
TCGA.CM.6169	20	69407	14501383	6061	-0.5517	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.A6.5666	20	69407	14575694	6116	-0.8531	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.EI.6883	20	69407	14758110	6170	-0.6613	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.F5.6864	20	69407	14850100	6205	-0.539	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.DC.6154	20	69407	14868352	6211	-0.7547	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.AA.3519	20	69407	14877885	6216	-0.809	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.AG.3602	20	69407	14891786	6197	-0.6941	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.NH.A8F8	20	69407	14912222	6238	-0.5978	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.AZ.4308	20	69407	14986154	6251	-0.6261	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.DY.A1H8	20	69407	15007063	6261	-0.8435	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.SS.A7HO	20	69407	15007063	6260	-0.8165	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.AF.A56N	20	69407	15520343	6511	-0.7497	SMALL-LOSS	NONFOCAL	114	Too-Many
TCGA.5M.AAT5	20	69407	16761604	7307	-0.7466	SMALL-LOSS	NONFOCAL	117	Too-Many
TCGA.AA.3496	20	69407	17154896	7482	-0.6609	SMALL-LOSS	NONFOCAL	117	Too-Many
TCGA.AG.3581	20	69407	17741757	7762	-0.5894	SMALL-LOSS	NONFOCAL	122	Too-Many
TCGA.DM.A28E	20	69407	17853249	7817	-0.9032	SMALL-LOSS	NONFOCAL	122	Too-Many
TCGA.DM.A1D0	20	69407	18522932	8008	-0.6236	SMALL-LOSS	NONFOCAL	132	Too-Many
TCGA.AZ.6608	20	69407	19022893	8229	-0.5526	SMALL-LOSS	NONFOCAL	135	Too-Many
TCGA.AG.3742	20	69407	19540281	8485	-0.6879	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.A6.6140	20	69407	19930890	8776	-0.7024	SMALL-LOSS	NONFOCAL	137	Too-Many
TCGA.AA.3952	20	69407	20186001	8932	-0.604	SMALL-LOSS	NONFOCAL	140	Too-Many
TCGA.DY.A1DC	20	69407	20688582	9048	-0.6365	SMALL-LOSS	NONFOCAL	142	Too-Many
TCGA.AA.3693	20	69407	20792254	9106	-0.7834	SMALL-LOSS	NONFOCAL	142	Too-Many
TCGA.RU.A8FL	20	69407	22528133	9637	-0.5413	SMALL-LOSS	NONFOCAL	147	Too-Many
TCGA.AA.3819	20	69407	22562437	9671	-0.6171	SMALL-LOSS	NONFOCAL	148	Too-Many
TCGA.CM.6170	20	69407	23060256	9896	-0.6701	SMALL-LOSS	NONFOCAL	151	Too-Many
TCGA.AG.A01Y	20	69407	23552297	10134	-0.8149	SMALL-LOSS	NONFOCAL	158	Too-Many
TCGA.A6.5662	20	69407	25723765	10908	-0.6221	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.F4.6854	20	69407	25737115	10916	-0.5428	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.DM.A1D4	20	69407	25738763	10938	-0.7687	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AG.4022	20	69407	25844992	10940	-0.6267	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.F5.6571	20	69407	25846493	10918	-0.6414	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AG.3583	20	69407	25849037	10630	-0.7167	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AA.A01Z	20	69407	25990001	10945	-0.7508	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.EI.6511	20	69407	26167979	10957	-0.5385	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AA.3531	20	69407	26289924	10969	-0.8305	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.AA.3855	20	69407	26289924	10959	-0.5163	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.EI.6881	20	69407	26289924	10963	-0.5564	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.NH.A50V	20	69407	29529824	10910	-0.6327	SMALL-LOSS	NONFOCAL	177	Too-Many
TCGA.DM.A0XF	20	69407	29912851	11007	-0.5339	SMALL-LOSS	NONFOCAL	179	Too-Many
TCGA.AA.3509.01A	20	168480	23967189	1291	-0.7201	SMALL-LOSS	NONFOCAL	162	Too-Many
TCGA.AA.A00Z.01A	20	209868	2636532	7	-0.6317	SMALL-LOSS	NONFOCAL	39	"ANGPT4,C20orf202,C20orf96,CSNK2A1,DEFB129,DEFB132,FAM110A,FKBP1A,LOC388780,NOP56,NRSN2,NSFL1C,PDYN,PSMF1,RAD21L1,RBCK1,RSPO4,SCRT2,SDCBP2,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC52A3,SNPH,SNRPB,SOX12,SRXN1,STK35,TBC1D20,TCF15,TGM3,TGM6,TMC2,TMEM74B,TRIB3,ZCCHC3,ZNF343"
TCGA.AG.A02G.01A	20	1298913	5170739	382	-0.5437	SMALL-LOSS	NONFOCAL	58	"ADAM33,ADRA1D,AP5S1,ATRN,AVP,C20orf141,C20orf194,C20orf27,CDC25B,CDS2,CENPB,CPXM1,DDRGK1,EBF4,FASTKD5,FKBP1A,GFRA4,GNRH2,HSPA12B,IDH3B,ITPA,LOC388780,LZTS3,MAVS,MRPS26,NOP56,NSFL1C,OXT,PANK2,PCED1A,PCNA,PDYN,PRND,PRNP,PTPRA,RASSF2,RNF24,SDCBP2,SIGLEC1,SIRPA,SIRPB1,SIRPB2,SIRPD,SIRPG,SLC23A2,SLC4A11,SMOX,SNRPB,SPEF1,STK35,TGM3,TGM6,TMC2,TMEM230,TMEM239,UBOX5,VPS16,ZNF343"
TCGA.AG.3898	20	1668400	3228411	653	-0.5571	SMALL-LOSS	NONFOCAL	28	"AVP,C20orf141,CPXM1,DDRGK1,EBF4,FASTKD5,GNRH2,IDH3B,ITPA,LOC388780,LZTS3,MRPS26,NOP56,OXT,PCED1A,PDYN,PTPRA,SIRPA,SLC4A11,SNRPB,STK35,TGM3,TGM6,TMC2,TMEM239,UBOX5,VPS16,ZNF343"
TCGA.AA.A00N.01A	20	2985656	3259475	66	-0.775	SMALL-LOSS	NONFOCAL	12	"AVP,C20orf194,DDRGK1,FASTKD5,GNRH2,ITPA,LZTS3,MRPS26,OXT,PTPRA,SLC4A11,UBOX5"
TCGA.CK.5914.01A	20	2985656	3278628	72	-1.0616	SMALL-LOSS	NONFOCAL	12	"AVP,C20orf194,DDRGK1,FASTKD5,GNRH2,ITPA,LZTS3,MRPS26,OXT,PTPRA,SLC4A11,UBOX5"
TCGA.CK.5914.01A	20	3641156	3891177	78	-0.946	SMALL-LOSS	NONFOCAL	11	"ADAM33,AP5S1,C20orf27,CDC25B,CENPB,GFRA4,HSPA12B,MAVS,PANK2,SIGLEC1,SPEF1"
TCGA.G4.6317	20	4098566	5594431	695	-0.7525	SMALL-LOSS	NONFOCAL	11	"ADRA1D,CDS2,GPCPD1,PCNA,PRND,PRNP,PROKR2,RASSF2,SLC23A2,SMOX,TMEM230"
TCGA.AG.A020	20	4514512	6182576	722	-0.8551	SMALL-LOSS	NONFOCAL	16	"C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,PCNA,PRND,PRNP,PROKR2,RASSF2,SLC23A2,TMEM230,TRMT6"
TCGA.D5.5541	20	4914719	6074748	446	-0.8068	SMALL-LOSS	NONFOCAL	13	"C20orf196,CDS2,CHGB,CRLS1,FERMT1,GPCPD1,LRRN4,MCM8,PCNA,PROKR2,SLC23A2,TMEM230,TRMT6"
TCGA.QG.A5Z1	20	7006364	20333065	5951	-0.813	SMALL-LOSS	NONFOCAL	46	"ANKEF1,BANF2,BFSP1,BTBD3,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,ESF1,FLRT3,HAO1,ISM1,JAG1,KIF16B,LAMP5,MACROD2,MGME1,MKKS,NAA20,NDUFAF5,OTOR,OVOL2,PAK7,PCSK2,PET117,PLCB1,PLCB4,POLR3F,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,TASP1,TMX4,ZNF133"
TCGA.G4.6317	20	7123360	11959792	2145	-0.7417	SMALL-LOSS	NONFOCAL	12	"ANKEF1,BTBD3,HAO1,JAG1,LAMP5,MKKS,PAK7,PLCB1,PLCB4,SLX4IP,SNAP25,TMX4"
TCGA.D5.5541	20	8729118	17524902	3977	-0.7658	SMALL-LOSS	NONFOCAL	23	"ANKEF1,BFSP1,BTBD3,ESF1,FLRT3,ISM1,JAG1,KIF16B,LAMP5,MACROD2,MKKS,NDUFAF5,OTOR,PAK7,PCSK2,PLCB1,PLCB4,SEL1L2,SLX4IP,SNAP25,SNRPB2,SPTLC3,TASP1"
TCGA.AG.3584	20	9653961	26288534	6824	-0.7079	SMALL-LOSS	NONFOCAL	78	"ABHD12,ACSS1,ANKEF1,APMAP,BANF2,BFSP1,BTBD3,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,ESF1,FLRT3,FOXA2,GGTLC1,GINS1,GZF1,INSM1,ISM1,JAG1,KIF16B,KIZ,MACROD2,MGME1,MKKS,NAA20,NANP,NAPB,NDUFAF5,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAK7,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SLX4IP,SNAP25,SNRPB2,SNX5,SPTLC3,SSTR4,SYNDIG1,TASP1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.DM.A1HA	20	9661697	16681797	3110	-0.8911	SMALL-LOSS	NONFOCAL	16	"ANKEF1,BTBD3,ESF1,FLRT3,ISM1,JAG1,KIF16B,MACROD2,MKKS,NDUFAF5,PAK7,SEL1L2,SLX4IP,SNAP25,SPTLC3,TASP1"
TCGA.AG.3574	20	12294874	19917431	3459	-0.9344	SMALL-LOSS	NONFOCAL	31	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,ESF1,FLRT3,ISM1,KIF16B,MACROD2,MGME1,NDUFAF5,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SNRPB2,SNX5,SPTLC3,TASP1,ZNF133"
TCGA.DY.A1DF	20	12413866	24023040	4986	-0.573	SMALL-LOSS	NONFOCAL	59	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ESF1,FLRT3,FOXA2,GGTLC1,GZF1,INSM1,ISM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NDUFAF5,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SEL1L2,SLC24A3,SNRPB2,SNX5,SPTLC3,SSTR4,TASP1,THBD,XRN2,ZNF133"
TCGA.CM.6169	20	14526691	22933103	3723	-0.5499	SMALL-LOSS	NONFOCAL	35	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,FOXA2,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NKX2-2,NKX2-4,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,XRN2,ZNF133"
TCGA.AA.3697	20	14644378	20688582	2924	-0.7615	SMALL-LOSS	NONFOCAL	29	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIF16B,MACROD2,MGME1,NAA20,OTOR,OVOL2,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.AA.3517	20	14658363	24524826	4436	-0.814	SMALL-LOSS	NONFOCAL	53	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,XRN2,ZNF133"
TCGA.DC.6154	20	14923389	18142563	1684	-0.7199	SMALL-LOSS	NONFOCAL	14	"BANF2,BFSP1,CSRP2BP,DSTN,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,PET117,RRBP1,SNRPB2,SNX5"
TCGA.AA.3519	20	15007063	26289924	4715	-0.7878	SMALL-LOSS	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AG.3602	20	15008028	26266312	4688	-0.7246	SMALL-LOSS	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.SS.A7HO	20	15078342	26289924	4671	-0.8527	SMALL-LOSS	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.A6.5666	20	15143793	25738763	4584	-0.86	SMALL-LOSS	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.NH.A8F8	20	15323281	26289924	4560	-0.6179	SMALL-LOSS	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.DY.A1H8	20	15389243	29505892	4536	-0.8751	SMALL-LOSS	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.T9.A92H	20	15395646	18094731	1479	-0.7362	SMALL-LOSS	NONFOCAL	12	"BANF2,BFSP1,DSTN,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,RRBP1,SNRPB2,SNX5"
TCGA.AG.A026	20	15481965	25844992	4431	-0.5378	SMALL-LOSS	NONFOCAL	64	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.F4.6808	20	15491393	19594772	2069	-0.8798	SMALL-LOSS	NONFOCAL	23	"BANF2,BFSP1,C20orf78,CSRP2BP,DSTN,DTD1,DZANK1,KIF16B,MACROD2,MGME1,OTOR,OVOL2,PCSK2,PET117,POLR3F,RBBP9,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,ZNF133"
TCGA.AF.A56N	20	15797505	21444382	2611	-0.7809	SMALL-LOSS	NONFOCAL	32	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,INSM1,KIF16B,KIZ,MACROD2,MGME1,NAA20,NKX2-4,OTOR,OVOL2,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,XRN2,ZNF133"
TCGA.G4.6317	20	16467226	29598226	3865	-0.7855	SMALL-LOSS	NONFOCAL	63	"ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,KIZ,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.NH.A8F7	20	17415417	24492128	2959	-0.56	SMALL-LOSS	NONFOCAL	49	"BANF2,BFSP1,C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,FOXA2,GGTLC1,GZF1,INSM1,KIZ,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PCSK2,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,SYNDIG1,THBD,XRN2,ZNF133"
TCGA.CK.5914.01A	20	17492571	20257783	200	-0.5585	SMALL-LOSS	NONFOCAL	22	"BANF2,BFSP1,C20orf78,CFAP61,CRNKL1,CSRP2BP,DSTN,DTD1,DZANK1,MGME1,NAA20,OVOL2,PET117,POLR3F,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNX5,ZNF133"
TCGA.AG.3581	20	17749898	23517690	2365	-0.5888	SMALL-LOSS	NONFOCAL	35	"C20orf78,CD93,CFAP61,CRNKL1,CSRP2BP,CST11,CST8,CSTL1,DTD1,DZANK1,FOXA2,GZF1,INSM1,KIZ,MGME1,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,OVOL2,PAX1,PET117,POLR3F,RALGAPA2,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3,SNX5,SSTR4,THBD,XRN2,ZNF133"
TCGA.D5.6923	20	18286129	26289924	2989	-0.5559	SMALL-LOSS	NONFOCAL	50	"ABHD12,ACSS1,APMAP,C20orf78,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DTD1,DZANK1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,SCP2D1,SEC23B,SLC24A3,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337"
TCGA.AA.3660	20	19399148	24078475	1943	-0.695	SMALL-LOSS	NONFOCAL	30	"CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,FOXA2,GGTLC1,GZF1,INSM1,KIZ,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,RALGAPA2,RIN2,SLC24A3,SSTR4,THBD,XRN2"
TCGA.AG.3574	20	19919633	23938590	1548	-0.9993	SMALL-LOSS	NONFOCAL	28	"CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST8,CST9,CST9L,CSTL1,FOXA2,GZF1,INSM1,KIZ,NAA20,NAPB,NKX2-2,NKX2-4,NXT1,PAX1,RALGAPA2,RIN2,SSTR4,THBD,XRN2"
TCGA.AF.4110	20	19920468	26289924	2211	-0.5353	SMALL-LOSS	NONFOCAL	41	"ABHD12,ACSS1,APMAP,CD93,CFAP61,CRNKL1,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIZ,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,PAX1,PYGB,RALGAPA2,RIN2,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF337"
TCGA.AA.3952	20	21951846	25142611	1383	-0.6885	SMALL-LOSS	NONFOCAL	23	"ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,FOXA2,GGTLC1,GZF1,NAPB,NXT1,SSTR4,SYNDIG1,THBD,VSX1"
TCGA.RU.A8FL	20	22533222	26289924	1323	-0.6683	SMALL-LOSS	NONFOCAL	30	"ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FOXA2,GGTLC1,GINS1,GZF1,NANP,NAPB,NINL,NXT1,PYGB,SSTR4,SYNDIG1,THBD,VSX1,ZNF337"
TCGA.DY.A1DF	20	24023782	26289924	625	-0.6361	SMALL-LOSS	NONFOCAL	12	"ABHD12,ACSS1,APMAP,CST7,ENTPD6,GINS1,NANP,NINL,PYGB,SYNDIG1,VSX1,ZNF337"
TCGA.G4.6317	20	31073167	32248280	340	-0.7989	SMALL-LOSS	NONFOCAL	18	"BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf203,CBFA2T2,CDK5RAP1,COMMD7,DNMT3B,MAPRE1,NECAB3,NOL4L,SNTA1,SUN5"
TCGA.G4.6299	20	34187312	38300294	1033	-0.5576	SMALL-LOSS	NONFOCAL	46	"AAR2,ACTR5,ADIG,ARHGAP40,BLCAP,BPI,C20orf24,CNBD2,CPNE1,CTNNBL1,DHX35,DLGAP4,DSN1,EPB41L1,FAM83D,GHRH,KIAA1755,LBP,MANBAL,MROH8,MYL9,NDRG3,NFS1,NNAT,PHF20,PPP1R16B,RALGAPB,RBL1,RBM12,RBM39,ROMO1,RPN2,RPRD1B,SAMHD1,SCAND1,SLA2,SLC32A1,SOGA1,SPAG4,SRC,TGIF2,TGIF2-C20orf24,TGM2,TLDC2,TTI1,VSTM2L"
TCGA.AZ.6608	20	44479793	45402818	312	-0.5196	SMALL-LOSS	NONFOCAL	21	"ACOT8,CD40,CDH22,CTSA,ELMO2,MMP9,NCOA5,NEURL2,OCSTAMP,PCIF1,PLTP,SLC12A5,SLC13A3,SLC2A10,SLC35C2,SPATA25,TP53RK,ZNF334,ZNF335,ZSWIM1,ZSWIM3"
TCGA.A6.5661	20	55045548	62912462	3091	-0.7304	SMALL-LOSS	NONFOCAL	98	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,BMP7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTCFL,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM209A,FAM209B,FAM217B,GATA5,GCNT7,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MTRNR2L3,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCK1,PCMTD2,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RAE1,RBBP8NL,RBM38,RGS19,RPS21,RTEL1,RTFDC1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SPO11,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TFAP2C,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBP1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.A6.2672	20	55070742	62912462	3076	-0.5913	SMALL-LOSS	NONFOCAL	98	"ABHD16B,ADRM1,ANKRD60,APCDD1L,ARFGAP1,ARFRP1,ATP5E,BHLHE23,BIRC7,BMP7,C20orf195,C20orf197,C20orf85,CABLES2,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CTCFL,CTSZ,DIDO1,DNAJC5,DPH3P1,EDN3,EEF1A2,FAM209A,FAM209B,FAM217B,GATA5,GCNT7,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MTRNR2L3,MYT1,NELFCD,NKAIN4,NPBWR2,NPEPL1,NTSR1,OGFR,OPRL1,OSBPL2,PCK1,PCMTD2,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PRPF6,PSMA7,PTK6,RAB22A,RAE1,RBBP8NL,RBM38,RGS19,RPS21,RTEL1,RTFDC1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SLMO2,SOX18,SPO11,SRMS,SS18L1,STMN3,STX16,SYCP2,TAF4,TCEA2,TCFL5,TFAP2C,TNFRSF6B,TPD52L2,TUBB1,UCKL1,VAPB,YTHDF1,ZBP1,ZBTB46,ZGPAT,ZNF512B,ZNF831"
TCGA.A6.5665	20	60107571	62912462	652	-1.1513	SMALL-LOSS	NONFOCAL	63	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LKAAEAR1,LSM14B,MIR1-1HG,MRGBP,MTG2,MYT1,NKAIN4,NPBWR2,NTSR1,OGFR,OPRL1,OSBPL2,PCMTD2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RGS19,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SOX18,SRMS,SS18L1,STMN3,TAF4,TCEA2,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.DY.A1DG	20	60489691	61065193	152	-0.6493	SMALL-LOSS	NONFOCAL	14	"ADRM1,CABLES2,CDH4,GATA5,HRH3,LAMA5,LSM14B,MTG2,OSBPL2,PSMA7,RBBP8NL,RPS21,SS18L1,TAF4"
TCGA.AA.3861.01A	20	60499355	62612538	323	-0.739	SMALL-LOSS	NONFOCAL	55	"ABHD16B,ADRM1,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CABLES2,CDH4,CHRNA4,COL20A1,COL9A3,DIDO1,DNAJC5,DPH3P1,EEF1A2,GATA5,GID8,GMEB2,HELZ2,HRH3,KCNQ2,LAMA5,LIME1,LSM14B,MIR1-1HG,MRGBP,MTG2,NKAIN4,NTSR1,OGFR,OSBPL2,PPDPF,PRPF6,PSMA7,PTK6,RBBP8NL,RPS21,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SLCO4A1,SRMS,SS18L1,STMN3,TAF4,TCFL5,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.3808.01A	20	60926723	61588067	122	-1.2888	SMALL-LOSS	NONFOCAL	16	"CABLES2,COL9A3,DIDO1,DPH3P1,GATA5,GID8,LAMA5,MIR1-1HG,MRGBP,NTSR1,OGFR,RBBP8NL,RPS21,SLC17A9,SLCO4A1,TCFL5"
TCGA.AA.A00N.01A	20	61584134	62871646	308	-0.5316	SMALL-LOSS	NONFOCAL	38	"ABHD16B,ARFGAP1,ARFRP1,BHLHE23,BIRC7,C20orf195,CHRNA4,COL20A1,DNAJC5,EEF1A2,GMEB2,HELZ2,KCNQ2,LIME1,LKAAEAR1,MYT1,NKAIN4,NPBWR2,OPRL1,PPDPF,PRPF6,PTK6,RGS19,RTEL1,SAMD10,SLC17A9,SLC2A4RG,SOX18,SRMS,STMN3,TCEA2,TNFRSF6B,TPD52L2,UCKL1,YTHDF1,ZBTB46,ZGPAT,ZNF512B"
TCGA.A6.3808.01A	20	61834068	62320838	151	-1.2279	SMALL-LOSS	NONFOCAL	16	"ARFGAP1,BIRC7,C20orf195,CHRNA4,COL20A1,EEF1A2,GMEB2,HELZ2,KCNQ2,NKAIN4,PPDPF,PTK6,RTEL1,SRMS,STMN3,YTHDF1"
TCGA.A6.3808.01A	20	62338301	62904524	126	-1.0911	SMALL-LOSS	NONFOCAL	20	"ABHD16B,ARFRP1,DNAJC5,LIME1,LKAAEAR1,MYT1,NPBWR2,OPRL1,PCMTD2,PRPF6,RGS19,SAMD10,SLC2A4RG,SOX18,TCEA2,TPD52L2,UCKL1,ZBTB46,ZGPAT,ZNF512B"
TCGA.AA.A02F.01A	21	10862558	48084135	1432	-0.8656	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AF.6136	21	10971565	15889552	233	-0.9401	SMALL-LOSS	NONFOCAL	11	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,POTED,RBM11,SAMSN1,TPTE"
TCGA.F5.6810	21	10971565	15909780	243	-0.9447	SMALL-LOSS	NONFOCAL	11	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,POTED,RBM11,SAMSN1,TPTE"
TCGA.EF.5830	21	10971565	17382915	769	-0.8045	SMALL-LOSS	NONFOCAL	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.AA.3660	21	10971565	17709379	879	-0.7746	SMALL-LOSS	NONFOCAL	14	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TPTE,USP25"
TCGA.AA.3544	21	10971565	19929627	1683	-0.7651	SMALL-LOSS	NONFOCAL	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.QG.A5YV	21	10971565	19951189	1668	-0.7505	SMALL-LOSS	NONFOCAL	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AA.3526	21	10971565	20629343	1975	-0.6704	SMALL-LOSS	NONFOCAL	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.D5.6932	21	10971565	20706564	1996	-0.5905	SMALL-LOSS	NONFOCAL	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.D5.6533	21	10971565	21645655	2286	-0.7054	SMALL-LOSS	NONFOCAL	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AD.6901	21	10971565	22163694	2510	-0.7077	SMALL-LOSS	NONFOCAL	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.D5.6924	21	10971565	22809678	2745	-0.7022	SMALL-LOSS	NONFOCAL	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.AZ.4616	21	10971565	23132905	2874	-0.6998	SMALL-LOSS	NONFOCAL	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.A6.2678	21	10971565	23205541	2921	-0.5698	SMALL-LOSS	NONFOCAL	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.A6.2684	21	10971565	23464712	2716	-0.5481	SMALL-LOSS	NONFOCAL	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.DY.A1H8	21	10971565	23642859	3074	-0.8808	SMALL-LOSS	NONFOCAL	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.NH.A8F7	21	10971565	23642859	3069	-0.579	SMALL-LOSS	NONFOCAL	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.F5.6571	21	10971565	26196744	4053	-0.9126	SMALL-LOSS	NONFOCAL	20	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,TPTE,USP25"
TCGA.D5.6923	21	10971565	31701407	6112	-0.542	SMALL-LOSS	NONFOCAL	41	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP24-1,KRTAP25-1,KRTAP26-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.3941	21	10971565	32207278	6267	-0.8719	SMALL-LOSS	NONFOCAL	68	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.3844	21	10971565	32434838	6343	-1.2948	SMALL-LOSS	NONFOCAL	70	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,TMPRSS15,TPTE,USP16,USP25"
TCGA.AA.3530	21	10971565	41674093	9965	-0.5337	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.A6.A567	21	10971565	42504112	10294	-0.7131	SMALL-LOSS	NONFOCAL	136	Too-Many
TCGA.AG.3584	21	10971565	45610892	11563	-0.6458	SMALL-LOSS	NONFOCAL	173	Too-Many
TCGA.5M.AAT5	21	10971565	48084819	12286	-0.7747	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.A6.6653	21	10971565	48084819	12285	-0.7888	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AA.3517	21	10971565	48084819	12272	-0.7906	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AA.3531	21	10971565	48084819	12282	-0.8314	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AA.3560	21	10971565	48084819	12285	-0.7332	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AD.A5EJ	21	10971565	48084819	12200	-0.7188	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AF.6655	21	10971565	48084819	12252	-0.5207	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AG.3575	21	10971565	48084819	12288	-0.7149	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AG.3599	21	10971565	48084819	12282	-1.0533	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AG.3890	21	10971565	48084819	12253	-0.6798	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AG.A01Y	21	10971565	48084819	12257	-0.8026	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AG.A020	21	10971565	48084819	12274	-0.941	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AG.A02N	21	10971565	48084819	12272	-0.7723	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.CM.6677	21	10971565	48084819	12218	-0.5819	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.DM.A1D6	21	10971565	48084819	12283	-0.8434	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.DM.A1HA	21	10971565	48084819	12284	-0.9548	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.EI.6511	21	10971565	48084819	12278	-0.5333	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.SS.A7HO	21	10971565	48084819	12282	-0.85	SMALL-LOSS	NONFOCAL	219	Too-Many
TCGA.AA.3967.01A	21	11098609	22370813	107	-0.5159	SMALL-LOSS	NONFOCAL	19	"BAGE,BAGE2,BAGE3,BAGE4,BAGE5,BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AA.3860	21	14595263	30179764	5629	-0.6561	SMALL-LOSS	NONFOCAL	22	"ADAMTS1,ADAMTS5,APP,ATP5J,BTG3,C21orf91,CHODL,CXADR,CYYR1,GABPA,HSPA13,JAM2,LIPI,LOC388813,MRPL39,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AA.3848	21	14693232	34031855	6917	-0.7949	SMALL-LOSS	NONFOCAL	75	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf59,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HSPA13,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LIPI,LOC388813,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,POTED,RBM11,RWDD2B,SAMSN1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,URB1,USP16,USP25"
TCGA.DY.A1DD	21	14770131	24023239	3190	-0.8422	SMALL-LOSS	NONFOCAL	14	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.DC.6158	21	14930697	22264862	2505	-0.5596	SMALL-LOSS	NONFOCAL	13	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NRIP1,POTED,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AG.3906.01A	21	15481260	30365048	230	-0.6769	SMALL-LOSS	NONFOCAL	23	"ADAMTS1,ADAMTS5,APP,ATP5J,BTG3,C21orf91,CHODL,CXADR,CYYR1,GABPA,HSPA13,JAM2,LIPI,LOC388813,LTN1,MRPL39,N6AMT1,NCAM2,NRIP1,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.CM.4750.01A	21	15481260	48084135	1997	-0.5167	SMALL-LOSS	NONFOCAL	212	Too-Many
TCGA.AA.A02H.01A	21	15538629	22849560	113	-0.8059	SMALL-LOSS	NONFOCAL	13	"BTG3,C21orf91,CHODL,CXADR,HSPA13,LIPI,LOC388813,NCAM2,NRIP1,RBM11,SAMSN1,TMPRSS15,USP25"
TCGA.AG.3602	21	16416810	34414022	6582	-0.6792	SMALL-LOSS	NONFOCAL	72	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,NRIP1,OLIG2,PAXBP1,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,URB1,USP16,USP25"
TCGA.AF.6136	21	17841643	31781688	5208	-0.7648	SMALL-LOSS	NONFOCAL	31	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,GABPA,GRIK1,JAM2,KRTAP13-1,KRTAP13-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,RWDD2B,TMPRSS15,USP16"
TCGA.AA.3660	21	18014190	34436972	6061	-0.727	SMALL-LOSS	NONFOCAL	70	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,BTG3,C21orf59,C21orf62,C21orf91,CCT8,CHODL,CLDN17,CLDN8,CXADR,CYYR1,EVA1C,GABPA,GRIK1,HUNK,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,NCAM2,OLIG2,PAXBP1,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMPRSS15,URB1,USP16"
TCGA.A6.5662	21	19824478	31436964	4398	-0.9836	SMALL-LOSS	NONFOCAL	17	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,CCT8,CYYR1,GABPA,GRIK1,JAM2,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,RWDD2B,USP16"
TCGA.QG.A5YV	21	22048976	48084819	9737	-0.8848	SMALL-LOSS	NONFOCAL	200	Too-Many
TCGA.A6.2684	21	23514060	34888703	3785	-0.5681	SMALL-LOSS	NONFOCAL	72	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,C21orf59,C21orf62,CCT8,CLDN17,CLDN8,CYYR1,DNAJC28,EVA1C,GABPA,GART,GRIK1,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,MRPL39,N6AMT1,OLIG1,OLIG2,PAXBP1,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,TMEM50B,URB1,USP16"
TCGA.DY.A1H8	21	23674286	48084819	9201	-0.8812	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.NH.A8F7	21	23674286	48084819	9171	-0.5797	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.DY.A1DD	21	24047695	48084819	9059	-0.8608	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.AZ.4616	21	24811351	33207693	3139	-0.7062	SMALL-LOSS	NONFOCAL	53	"ADAMTS1,ADAMTS5,APP,ATP5J,BACH1,CCT8,CLDN17,CLDN8,CYYR1,GABPA,GRIK1,JAM2,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MRPL39,N6AMT1,RWDD2B,SCAF4,SOD1,TIAM1,USP16"
TCGA.F5.6810	21	28040953	43745578	6233	-1.065	SMALL-LOSS	NONFOCAL	123	Too-Many
TCGA.D5.6533	21	28971146	34343827	1820	-0.6251	SMALL-LOSS	NONFOCAL	55	"BACH1,C21orf59,C21orf62,CCT8,CLDN17,CLDN8,EVA1C,GRIK1,HUNK,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,LTN1,MAP3K7CL,MIS18A,MRAP,N6AMT1,PAXBP1,RWDD2B,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,URB1,USP16"
TCGA.DC.4745	21	31028761	33364868	804	-0.781	SMALL-LOSS	NONFOCAL	39	"CLDN17,CLDN8,GRIK1,HUNK,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,SCAF4,SOD1,TIAM1"
TCGA.AG.3906.01A	21	31311651	32253300	31	-0.9169	SMALL-LOSS	NONFOCAL	34	"CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1"
TCGA.AA.A00L.01A	21	31311651	32496803	37	-0.551	SMALL-LOSS	NONFOCAL	36	"CLDN17,CLDN8,GRIK1,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,TIAM1"
TCGA.AG.3882	21	31434179	32793584	454	-0.7404	SMALL-LOSS	NONFOCAL	35	"CLDN17,CLDN8,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP19-8,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1,TIAM1"
TCGA.AG.3891.01A	21	31538234	32253300	31	-0.5432	SMALL-LOSS	NONFOCAL	33	"CLDN17,CLDN8,KRTAP11-1,KRTAP13-1,KRTAP13-2,KRTAP13-3,KRTAP13-4,KRTAP15-1,KRTAP19-1,KRTAP19-2,KRTAP19-3,KRTAP19-4,KRTAP19-5,KRTAP19-6,KRTAP19-7,KRTAP20-1,KRTAP20-2,KRTAP20-3,KRTAP21-1,KRTAP21-2,KRTAP21-3,KRTAP22-1,KRTAP22-2,KRTAP23-1,KRTAP24-1,KRTAP25-1,KRTAP26-1,KRTAP27-1,KRTAP6-1,KRTAP6-2,KRTAP6-3,KRTAP7-1,KRTAP8-1"
TCGA.AA.3844	21	32439269	48084819	5926	-0.7224	SMALL-LOSS	NONFOCAL	149	Too-Many
TCGA.CK.5914.01A	21	32638279	34783074	197	-0.7678	SMALL-LOSS	NONFOCAL	19	"C21orf59,C21orf62,EVA1C,HUNK,IFNAR1,IFNAR2,IFNGR2,IL10RB,MIS18A,MRAP,OLIG1,OLIG2,PAXBP1,SCAF4,SOD1,SYNJ1,TCP10L,TIAM1,URB1"
TCGA.EI.6508	21	32668005	48084819	5843	-0.7894	SMALL-LOSS	NONFOCAL	149	Too-Many
TCGA.AA.A01K.01A	21	33036050	48084135	1137	-0.5942	SMALL-LOSS	NONFOCAL	148	Too-Many
TCGA.AG.A01N.01A	21	33036050	48084135	1218	-0.6908	SMALL-LOSS	NONFOCAL	148	Too-Many
TCGA.AG.3882	21	33349925	34526384	412	-0.8404	SMALL-LOSS	NONFOCAL	12	"C21orf59,C21orf62,EVA1C,HUNK,MIS18A,MRAP,OLIG1,OLIG2,PAXBP1,SYNJ1,TCP10L,URB1"
TCGA.AA.A01C.01A	21	34136618	37781641	249	-0.7225	SMALL-LOSS	NONFOCAL	32	"ATP5O,C21orf140,C21orf62,CBR1,CBR3,CHAF1B,CLIC6,CRYZL1,DNAJC28,DONSON,DOPEY2,GART,IFNAR1,IFNAR2,IFNGR2,IL10RB,ITSN1,KCNE1,KCNE2,LOC400863,MORC3,MRPS6,OLIG1,OLIG2,PAXBP1,RCAN1,RUNX1,SETD4,SLC5A3,SMIM11,SON,TMEM50B"
TCGA.CM.6170	21	34704319	46926550	4808	-0.5661	SMALL-LOSS	NONFOCAL	118	Too-Many
TCGA.AG.3906.01A	21	34945566	37626058	140	-0.5542	SMALL-LOSS	NONFOCAL	19	"ATP5O,C21orf140,CBR1,CBR3,CLIC6,CRYZL1,DONSON,DOPEY2,ITSN1,KCNE1,KCNE2,LOC400863,MRPS6,RCAN1,RUNX1,SETD4,SLC5A3,SMIM11,SON"
TCGA.D5.6533	21	35056728	38643771	1331	-0.57	SMALL-LOSS	NONFOCAL	25	"ATP5O,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCR3,HLCS,ITSN1,KCNE1,KCNE2,LOC400863,MORC3,MRPS6,PIGP,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SLC5A3,SMIM11,TTC3"
TCGA.CK.5914.01A	21	35091047	38639467	261	-0.7072	SMALL-LOSS	NONFOCAL	25	"ATP5O,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCR3,HLCS,ITSN1,KCNE1,KCNE2,LOC400863,MORC3,MRPS6,PIGP,RCAN1,RIPPLY3,RUNX1,SETD4,SIM2,SLC5A3,SMIM11,TTC3"
TCGA.A6.5662	21	35252695	48084819	5004	-0.7831	SMALL-LOSS	NONFOCAL	124	Too-Many
TCGA.AA.3660	21	35384820	40980237	2223	-0.7148	SMALL-LOSS	NONFOCAL	34	"BRWD1,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,HMGN1,KCNE1,KCNE2,KCNJ15,KCNJ6,LCA5L,MORC3,MRPS6,PIGP,PSMG1,RCAN1,RIPPLY3,RUNX1,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,TTC3,WRB"
TCGA.A6.2684	21	35471125	41710695	2432	-0.6131	SMALL-LOSS	NONFOCAL	38	"B3GALT5,BRWD1,C21orf140,CBR1,CBR3,CHAF1B,CLDN14,CLIC6,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ETS2,HLCS,HMGN1,IGSF5,KCNE1,KCNE2,KCNJ15,KCNJ6,LCA5L,MORC3,MRPS6,PCP4,PIGP,PSMG1,RCAN1,RIPPLY3,RUNX1,SETD4,SH3BGR,SIM2,SLC5A3,SMIM11,TTC3,WRB"
TCGA.DC.6158	21	37430101	46196307	3569	-0.6162	SMALL-LOSS	NONFOCAL	91	"ABCG1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C2CD2,CBR1,CBR3,CBS,CHAF1B,CLDN14,CRYAA,CSTB,DNMT3L,DOPEY2,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ERVH48-1,ETS2,FAM3B,HLCS,HMGN1,HSF2BP,ICOSLG,IGSF5,KCNJ15,KCNJ6,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,MORC3,MX1,MX2,NDUFV3,PCP4,PDE9A,PDXK,PFKL,PIGP,PKNOX1,PLAC4,PRDM15,PSMG1,PWP2,RIPK4,RIPPLY3,RRP1,RRP1B,RSPH1,SETD4,SH3BGR,SIK1,SIM2,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,TTC3,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,ZBTB21"
TCGA.AG.3906.01A	21	38444350	40652023	135	-0.8184	SMALL-LOSS	NONFOCAL	11	"BRWD1,DSCR3,DSCR4,DYRK1A,ERG,ETS2,KCNJ15,KCNJ6,PIGP,PSMG1,TTC3"
TCGA.AG.3602	21	38605494	44889291	2835	-0.7625	SMALL-LOSS	NONFOCAL	45	"ABCG1,B3GALT5,BACE2,BRWD1,C2CD2,CBS,CRYAA,DSCAM,DSCR3,DSCR4,DYRK1A,ERG,ERVH48-1,ETS2,FAM3B,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,MX1,MX2,NDUFV3,PCP4,PDE9A,PKNOX1,PLAC4,PRDM15,PSMG1,RIPK4,RSPH1,SH3BGR,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,U2AF1,UBASH3A,UMODL1,WDR4,WRB,ZBTB21"
TCGA.AG.3882	21	38784973	41447057	1261	-0.7989	SMALL-LOSS	NONFOCAL	16	"B3GALT5,BRWD1,DSCAM,DSCR4,DYRK1A,ERG,ETS2,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,PCP4,PSMG1,SH3BGR,WRB"
TCGA.D5.6533	21	39165767	43958914	2310	-0.5912	SMALL-LOSS	NONFOCAL	34	"ABCG1,B3GALT5,BACE2,BRWD1,C2CD2,DSCAM,DSCR4,ERG,ETS2,FAM3B,HMGN1,IGSF5,KCNJ15,KCNJ6,LCA5L,MX1,MX2,PCP4,PLAC4,PRDM15,PSMG1,RIPK4,RSPH1,SH3BGR,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,UBASH3A,UMODL1,WRB,ZBTB21"
TCGA.CK.6748	21	39810742	46764296	2913	-0.5748	SMALL-LOSS	NONFOCAL	80	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DNMT3L,DSCAM,ERG,ERVH48-1,ETS2,FAM207A,FAM3B,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,MX1,MX2,NDUFV3,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SH3BGR,SIK1,SLC37A1,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,ZBTB21"
TCGA.AG.3727	21	40193913	48084819	3086	-0.7464	SMALL-LOSS	NONFOCAL	94	"ABCG1,ADARB1,AGPAT3,AIRE,B3GALT5,BACE2,BRWD1,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,ETS2,FAM207A,FAM3B,FTCD,HMGN1,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LCA5L,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PSMG1,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SH3BGR,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,WRB,YBEY,ZBTB21"
TCGA.AG.3906.01A	21	40762595	45648845	419	-0.6671	SMALL-LOSS	NONFOCAL	45	"ABCG1,AGPAT3,B3GALT5,BACE2,C21orf33,C2CD2,CBS,CRYAA,CSTB,DSCAM,ERVH48-1,FAM3B,HSF2BP,ICOSLG,IGSF5,LCA5L,MX1,MX2,NDUFV3,PCP4,PDE9A,PDXK,PKNOX1,PLAC4,PRDM15,PWP2,RIPK4,RRP1,RRP1B,RSPH1,SH3BGR,SIK1,SLC37A1,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,U2AF1,UBASH3A,UMODL1,WDR4,WRB,ZBTB21"
TCGA.AA.3660	21	41104347	48084819	2694	-0.7148	SMALL-LOSS	NONFOCAL	86	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,IGSF5,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PCP4,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.A6.5665	21	41826973	48084819	2237	-0.9872	SMALL-LOSS	NONFOCAL	84	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.A6.2684	21	41835765	48084819	2092	-0.758	SMALL-LOSS	NONFOCAL	84	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,DSCAM,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.A6.A567	21	42506106	48084819	1880	-1.0973	SMALL-LOSS	NONFOCAL	83	"ABCG1,ADARB1,AGPAT3,AIRE,BACE2,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FAM3B,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,MX1,MX2,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,PLAC4,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS2,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.A6.5661	21	43136388	48084819	1621	-0.8539	SMALL-LOSS	NONFOCAL	77	"ABCG1,ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,C2CD2,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PCNT,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PRDM15,PRMT2,PTTG1IP,PWP2,RIPK4,RRP1,RRP1B,RSPH1,S100B,SIK1,SLC19A1,SLC37A1,SPATC1L,SUMO3,TFF1,TFF2,TFF3,TMPRSS3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBASH3A,UBE2G2,UMODL1,WDR4,YBEY,ZBTB21"
TCGA.CK.5914.01A	21	43867150	44845237	107	-1.1943	SMALL-LOSS	NONFOCAL	12	"CBS,CRYAA,ERVH48-1,NDUFV3,PDE9A,PKNOX1,RSPH1,SIK1,SLC37A1,U2AF1,UBASH3A,WDR4"
TCGA.AA.A00N.01A	21	44151898	47686869	566	-0.5767	SMALL-LOSS	NONFOCAL	58	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DNMT3L,ERVH48-1,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,NDUFV3,PCBP3,PDE9A,PDXK,PFKL,PKNOX1,POFUT2,PTTG1IP,PWP2,RRP1,RRP1B,SIK1,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBE2G2,WDR4"
TCGA.AA.3544	21	44434835	48084819	1067	-0.8143	SMALL-LOSS	NONFOCAL	60	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,CBS,COL18A1,COL6A1,COL6A2,CRYAA,CSTB,DIP2A,DNMT3L,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PDXK,PFKL,PKNOX1,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SIK1,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,U2AF1,UBE2G2,YBEY"
TCGA.AZ.4681	21	44601085	46002970	367	-0.7672	SMALL-LOSS	NONFOCAL	23	"AGPAT3,AIRE,C21orf2,C21orf33,CSTB,DNMT3L,HSF2BP,ICOSLG,KRTAP10-1,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,LRRC3,PDXK,PFKL,PWP2,RRP1,RRP1B,SIK1,TRAPPC10,TRPM2,TSPEAR"
TCGA.AG.3602	21	44915532	48084819	889	-0.8979	SMALL-LOSS	NONFOCAL	55	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,COL18A1,COL6A1,COL6A2,CSTB,DIP2A,DNMT3L,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PDXK,PFKL,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.D5.6533	21	44925333	48084819	888	-0.6823	SMALL-LOSS	NONFOCAL	55	"ADARB1,AGPAT3,AIRE,C21orf2,C21orf33,C21orf58,COL18A1,COL6A1,COL6A2,CSTB,DIP2A,DNMT3L,FAM207A,FTCD,HSF2BP,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PDXK,PFKL,POFUT2,PRMT2,PTTG1IP,PWP2,RRP1,RRP1B,S100B,SLC19A1,SPATC1L,SUMO3,TRAPPC10,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.CK.5914.01A	21	45089710	45948288	205	-1.1643	SMALL-LOSS	NONFOCAL	16	"AGPAT3,AIRE,C21orf2,C21orf33,CSTB,DNMT3L,ICOSLG,LRRC3,PDXK,PFKL,PWP2,RRP1,RRP1B,TRAPPC10,TRPM2,TSPEAR"
TCGA.D5.6926	21	45610892	48084819	727	-0.5581	SMALL-LOSS	NONFOCAL	46	"ADARB1,AIRE,C21orf2,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,DNMT3L,FAM207A,FTCD,ICOSLG,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PFKL,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AG.3584	21	45679089	48084819	703	-0.9589	SMALL-LOSS	NONFOCAL	45	"ADARB1,AIRE,C21orf2,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,DNMT3L,FAM207A,FTCD,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,LSS,MCM3AP,PCBP3,PCNT,PFKL,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,TRPM2,TSPEAR,UBE2G2,YBEY"
TCGA.AA.3967.01A	21	45741635	47558719	213	-0.5326	SMALL-LOSS	NONFOCAL	34	"ADARB1,C21orf2,COL18A1,COL6A1,COL6A2,FAM207A,FTCD,ITGB2,KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LRRC3,PCBP3,PFKL,POFUT2,PTTG1IP,SLC19A1,SUMO3,TRPM2,TSPEAR,UBE2G2"
TCGA.AG.3906.01A	21	45949634	46117710	36	-1.0603	SMALL-LOSS	NONFOCAL	17	"KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,TSPEAR"
TCGA.CK.5914.01A	21	45949634	46193435	40	-0.6066	SMALL-LOSS	NONFOCAL	18	"KRTAP10-1,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-2,KRTAP10-3,KRTAP10-4,KRTAP10-5,KRTAP10-6,KRTAP10-7,KRTAP10-8,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,TSPEAR,UBE2G2"
TCGA.AG.3909.01A	21	46047051	46379961	43	-0.8313	SMALL-LOSS	NONFOCAL	14	"FAM207A,ITGB2,KRTAP10-10,KRTAP10-11,KRTAP10-12,KRTAP10-9,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,PTTG1IP,SUMO3,TSPEAR,UBE2G2"
TCGA.A6.3808.01A	21	46066683	47610977	206	-0.9297	SMALL-LOSS	NONFOCAL	22	"ADARB1,COL18A1,COL6A1,COL6A2,FAM207A,FTCD,ITGB2,KRTAP10-11,KRTAP10-12,KRTAP12-1,KRTAP12-2,KRTAP12-3,KRTAP12-4,LSS,PCBP3,POFUT2,PTTG1IP,SLC19A1,SPATC1L,SUMO3,TSPEAR,UBE2G2"
TCGA.CK.5914.01A	21	46197167	47700374	238	-1.0684	SMALL-LOSS	NONFOCAL	16	"ADARB1,COL18A1,COL6A1,COL6A2,FAM207A,FTCD,ITGB2,LSS,MCM3AP,PCBP3,POFUT2,PTTG1IP,SLC19A1,SPATC1L,SUMO3,UBE2G2"
TCGA.AG.3882	21	46221166	48084819	533	-0.9815	SMALL-LOSS	NONFOCAL	22	"ADARB1,C21orf58,COL18A1,COL6A1,COL6A2,DIP2A,FAM207A,FTCD,ITGB2,LSS,MCM3AP,PCBP3,PCNT,POFUT2,PRMT2,PTTG1IP,S100B,SLC19A1,SPATC1L,SUMO3,UBE2G2,YBEY"
TCGA.DC.4745	21	46375682	47700497	365	-1.0067	SMALL-LOSS	NONFOCAL	12	"ADARB1,COL18A1,COL6A1,COL6A2,FAM207A,FTCD,LSS,MCM3AP,PCBP3,POFUT2,SLC19A1,SPATC1L"
TCGA.AA.3861.01A	21	46640704	47660673	122	-0.8636	SMALL-LOSS	NONFOCAL	11	"ADARB1,COL18A1,COL6A1,COL6A2,FTCD,LSS,MCM3AP,PCBP3,POFUT2,SLC19A1,SPATC1L"
TCGA.CM.6170	21	46953291	48084819	307	-0.6299	SMALL-LOSS	NONFOCAL	14	"C21orf58,COL6A1,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCBP3,PCNT,PRMT2,S100B,SLC19A1,SPATC1L,YBEY"
TCGA.AG.3906.01A	21	47531344	48084135	155	-0.7122	SMALL-LOSS	NONFOCAL	11	"C21orf58,COL6A2,DIP2A,FTCD,LSS,MCM3AP,PCNT,PRMT2,S100B,SPATC1L,YBEY"
TCGA.DC.6160.01A	22	14638257	20654545	673	-0.5307	SMALL-LOSS	NONFOCAL	51	"ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,LOC101929372,LOC388849,MICAL3,MRPL40,OR11H1,PEX26,POTEH,PRODH,RANBP1,RIMBP3,RTN4R,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TMEM191B,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,XKR3,ZDHHC8"
TCGA.AM.5820	22	16055206	18062986	337	-0.769	SMALL-LOSS	NONFOCAL	12	"CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,OR11H1,POTEH,SLC25A18,XKR3"
TCGA.AA.3973	22	16055206	18877786	575	-0.8492	SMALL-LOSS	NONFOCAL	19	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,OR11H1,PEX26,POTEH,SLC25A18,TUBA8,USP18,XKR3"
TCGA.NH.A6GA	22	16055206	18896300	581	-0.7623	SMALL-LOSS	NONFOCAL	20	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,DGCR6,GAB4,IL17RA,LOC101929372,MICAL3,OR11H1,PEX26,POTEH,SLC25A18,TUBA8,USP18,XKR3"
TCGA.A6.5661	22	16055206	22332875	1290	-0.8217	SMALL-LOSS	NONFOCAL	78	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PPM1F,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,XKR3,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.DM.A1HA	22	16055206	23872194	1761	-1.0308	SMALL-LOSS	NONFOCAL	88	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BCR,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GGTLC2,GNAZ,GNB1L,GP1BB,GSC2,HIC2,HIRA,IGLL5,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PPM1F,PRAME,PRODH,RAB36,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RSPH14,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,VPREB1,XKR3,YDJC,YPEL1,ZDHHC8,ZNF280A,ZNF280B,ZNF74"
TCGA.AA.3561	22	16055206	25661697	2222	-0.756	SMALL-LOSS	NONFOCAL	122	Too-Many
TCGA.DM.A28A	22	16055206	33797361	5221	-0.8015	SMALL-LOSS	NONFOCAL	206	Too-Many
TCGA.DY.A1DG	22	16055206	34370988	5533	-0.5907	SMALL-LOSS	NONFOCAL	206	Too-Many
TCGA.D5.6932	22	16055206	37289868	6669	-0.679	SMALL-LOSS	NONFOCAL	228	Too-Many
TCGA.AZ.4614	22	16055206	37722300	6776	-0.8487	SMALL-LOSS	NONFOCAL	239	Too-Many
TCGA.4N.A93T	22	16055206	51186227	11164	-0.9475	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.A6.2671	22	16055206	51186227	11145	-0.7013	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.A6.5662	22	16055206	51186227	11131	-0.8828	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.A6.6138	22	16055206	51186227	11162	-0.5591	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.A6.6650	22	16055206	51186227	10445	-0.5178	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.A6.A567	22	16055206	51186227	11084	-0.9637	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AA.3548	22	16055206	51186227	11158	-0.7297	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AA.3560	22	16055206	51186227	11159	-0.8511	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AA.3662	22	16055206	51186227	11150	-0.6122	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AA.3851	22	16055206	51186227	11156	-0.5306	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AA.3860	22	16055206	51186227	11156	-0.6379	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AA.3952	22	16055206	51186227	11153	-0.628	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AA.3972	22	16055206	51186227	11160	-0.751	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AA.A01Z	22	16055206	51186227	11150	-0.8663	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.3575	22	16055206	51186227	11160	-0.7641	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.3581	22	16055206	51186227	11156	-0.6576	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.3583	22	16055206	51186227	10792	-0.7503	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.3602	22	16055206	51186227	11068	-0.7613	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.3725	22	16055206	51186227	11123	-0.5615	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.4021	22	16055206	51186227	11135	-0.8658	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.A020	22	16055206	51186227	11138	-1.006	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.A026	22	16055206	51186227	11143	-0.609	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AY.5543	22	16055206	51186227	11062	-0.6759	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AZ.6608	22	16055206	51186227	11133	-0.6235	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.CM.5349	22	16055206	51186227	11155	-0.5534	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.CM.6170	22	16055206	51186227	11157	-0.6191	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.D5.5540	22	16055206	51186227	11155	-0.8687	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.D5.6533	22	16055206	51186227	11134	-0.6328	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.D5.6536	22	16055206	51186227	11156	-0.7646	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.DM.A1D9	22	16055206	51186227	11149	-0.7653	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.F4.6807	22	16055206	51186227	11133	-0.5155	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.F5.6863	22	16055206	51186227	11151	-0.6855	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.NH.A50V	22	16055206	51186227	11096	-0.7299	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.QG.A5YV	22	16055206	51186227	11072	-0.6934	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.QG.A5YW	22	16055206	51186227	11100	-0.6223	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.QL.A97D	22	16055206	51186227	11152	-0.5253	SMALL-LOSS	NONFOCAL	426	Too-Many
TCGA.AG.A02G.01A	22	16266947	22385320	477	-0.9553	SMALL-LOSS	NONFOCAL	78	"AIFM3,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CCDC116,CCT8L2,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,CRKL,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIC2,HIRA,IL17RA,KLHL22,LOC101929372,LOC388849,LRRC74B,LZTR1,MAPK1,MED15,MICAL3,MRPL40,OR11H1,P2RX6,PEX26,PI4KA,POTEH,PPIL2,PPM1F,PRODH,RANBP1,RIMBP3,RIMBP3B,RIMBP3C,RTN4R,SCARF2,SDF2L1,SEPT5,SERPIND1,SLC25A1,SLC25A18,SLC7A4,SNAP29,TANGO2,TBX1,THAP7,TMEM191B,TMEM191C,TOP3B,TRMT2A,TSSK2,TUBA8,TXNRD2,UBE2L3,UFD1L,USP18,XKR3,YDJC,YPEL1,ZDHHC8,ZNF74"
TCGA.AA.A02F.01A	22	16266947	51220568	2404	-0.8125	SMALL-LOSS	NONFOCAL	427	Too-Many
TCGA.DM.A1DB	22	16877134	18224218	392	-0.7089	SMALL-LOSS	NONFOCAL	13	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,SLC25A18,XKR3"
TCGA.EI.6881	22	16877134	18877786	571	-0.5545	SMALL-LOSS	NONFOCAL	17	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,GAB4,IL17RA,LOC101929372,MICAL3,PEX26,SLC25A18,TUBA8,USP18,XKR3"
TCGA.AD.6963	22	16877229	19372783	703	-0.5198	SMALL-LOSS	NONFOCAL	26	"ATP6V1E1,BCL2L13,BID,CCT8L2,CECR1,CECR2,CECR5,CECR6,CLTCL1,DGCR14,DGCR2,DGCR6,GAB4,GSC2,HIRA,IL17RA,LOC101929372,MICAL3,PEX26,PRODH,SLC25A1,SLC25A18,TSSK2,TUBA8,USP18,XKR3"
TCGA.A6.3808.01A	22	18613562	20102747	234	-0.6288	SMALL-LOSS	NONFOCAL	27	"ARVCF,C22orf29,C22orf39,CDC45,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR8,GNB1L,GP1BB,GSC2,HIRA,MRPL40,PRODH,SEPT5,SLC25A1,TANGO2,TBX1,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18"
TCGA.DT.5265	22	18886914	19437359	149	-0.646	SMALL-LOSS	NONFOCAL	11	"C22orf39,CLTCL1,DGCR14,DGCR2,DGCR6,GSC2,HIRA,MRPL40,PRODH,SLC25A1,TSSK2"
TCGA.NH.A6GA	22	18905605	51186227	10567	-0.7647	SMALL-LOSS	NONFOCAL	406	Too-Many
TCGA.EI.6881	22	18976689	51186227	10553	-0.6156	SMALL-LOSS	NONFOCAL	405	Too-Many
TCGA.AA.3973	22	19030335	51186227	10551	-0.8706	SMALL-LOSS	NONFOCAL	405	Too-Many
TCGA.CK.5914.01A	22	19420730	20754871	174	-0.5924	SMALL-LOSS	NONFOCAL	24	"ARVCF,C22orf29,C22orf39,CDC45,CLDN5,COMT,DGCR6L,DGCR8,GNB1L,GP1BB,LOC388849,MRPL40,RANBP1,RIMBP3,RTN4R,SEPT5,TANGO2,TBX1,TMEM191B,TRMT2A,TXNRD2,UFD1L,ZDHHC8,ZNF74"
TCGA.AG.4009.01A	22	20073490	20843224	61	-0.6575	SMALL-LOSS	NONFOCAL	12	"DGCR6L,DGCR8,KLHL22,LOC388849,RANBP1,RIMBP3,RTN4R,SCARF2,TMEM191B,TRMT2A,ZDHHC8,ZNF74"
TCGA.AA.A00N.01A	22	20073490	20847372	86	-0.8145	SMALL-LOSS	NONFOCAL	12	"DGCR6L,DGCR8,KLHL22,LOC388849,RANBP1,RIMBP3,RTN4R,SCARF2,TMEM191B,TRMT2A,ZDHHC8,ZNF74"
TCGA.AF.3914.01A	22	21192866	22042984	90	-0.6072	SMALL-LOSS	NONFOCAL	18	"AIFM3,CCDC116,CRKL,HIC2,LRRC74B,LZTR1,P2RX6,PI4KA,PPIL2,RIMBP3B,RIMBP3C,SDF2L1,SLC7A4,SNAP29,THAP7,TMEM191C,UBE2L3,YDJC"
TCGA.DC.6160.01A	22	21582659	42463031	2504	-0.5286	SMALL-LOSS	NONFOCAL	271	Too-Many
TCGA.DM.A1D0	22	22113687	31288768	3113	-0.802	SMALL-LOSS	NONFOCAL	103	Too-Many
TCGA.QG.A5Z1	22	23432233	24406777	281	-1.0071	SMALL-LOSS	NONFOCAL	22	"BCR,C22orf15,CHCHD10,DDT,DDTL,DERL3,DRICH1,GNAZ,GSTT1,GSTT2,GSTT2B,IGLL1,LOC391322,MIF,MMP11,RAB36,RGL4,RSPH14,SLC2A11,SMARCB1,VPREB3,ZNF70"
TCGA.AG.A02G.01A	22	23482437	51220568	2412	-0.5358	SMALL-LOSS	NONFOCAL	342	Too-Many
TCGA.AA.A00N.01A	22	24085935	24323083	53	-0.5299	SMALL-LOSS	NONFOCAL	13	"C22orf15,CHCHD10,DDT,DDTL,DERL3,GSTT2,GSTT2B,MIF,MMP11,SLC2A11,SMARCB1,VPREB3,ZNF70"
TCGA.DM.A1HA	22	24227245	51186227	9308	-1.0432	SMALL-LOSS	NONFOCAL	328	Too-Many
TCGA.AA.3561	22	25719287	48842335	8061	-0.742	SMALL-LOSS	NONFOCAL	268	Too-Many
TCGA.DT.5265	22	29033457	29749275	195	-0.5543	SMALL-LOSS	NONFOCAL	14	"AP1B1,C22orf31,CCDC117,CHEK2,EMID1,EWSR1,GAS2L1,HSCB,KREMEN1,RASL10A,RHBDD3,TTC28,XBP1,ZNRF3"
TCGA.AA.A010.01A	22	29091063	29924036	128	-0.582	SMALL-LOSS	NONFOCAL	16	"AP1B1,C22orf31,CCDC117,CHEK2,EMID1,EWSR1,GAS2L1,HSCB,KREMEN1,NEFH,RASL10A,RFPL1,RHBDD3,THOC5,XBP1,ZNRF3"
TCGA.QG.A5Z1	22	32443648	36519039	1772	-0.8962	SMALL-LOSS	NONFOCAL	21	"APOL5,APOL6,BPIFC,C22orf42,FBXO7,HMGXB4,HMOX1,ISX,LARGE,MB,MCM5,RASD2,RBFOX2,RFPL2,RFPL3,RTCB,SLC5A1,SLC5A4,SYN3,TIMP3,TOM1"
TCGA.DM.A28A	22	33823307	51186227	5915	-0.879	SMALL-LOSS	NONFOCAL	221	Too-Many
TCGA.DY.A1DG	22	34484129	51186227	5574	-0.5962	SMALL-LOSS	NONFOCAL	220	Too-Many
TCGA.AA.3549	22	35669440	49412290	4377	-0.5667	SMALL-LOSS	NONFOCAL	184	Too-Many
TCGA.D5.6932	22	37308690	51186227	4478	-0.7057	SMALL-LOSS	NONFOCAL	198	Too-Many
TCGA.AZ.4614	22	37751697	46266330	2254	-0.8403	SMALL-LOSS	NONFOCAL	139	Too-Many
TCGA.A6.3808.01A	22	37881935	38282713	123	-0.6992	SMALL-LOSS	NONFOCAL	15	"ANKRD54,CARD10,CDC42EP1,EIF3L,GALR3,GCAT,GGA1,H1F0,LGALS1,LGALS2,MFNG,NOL12,PDXP,SH3BP1,TRIOBP"
TCGA.QG.A5Z1	22	38144617	40697580	502	-0.9381	SMALL-LOSS	NONFOCAL	53	"ANKRD54,APOBEC3A,APOBEC3A_B,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,BAIAP2L2,C22orf23,CACNA1I,CBX6,CBX7,CBY1,CSNK1E,DDX17,DMC1,DNAL4,EIF3L,ENTHD1,FAM227A,FAM83F,GALR3,GCAT,GRAP2,GTPBP1,H1F0,JOSD1,KCNJ4,KDELR3,LOC400927-CSNK1E,MAFF,MGAT3,MICALL1,MIEF1,NPTXR,PDGFB,PICK1,PLA2G6,POLR2F,RPL3,RPS19BP1,SLC16A8,SOX10,SUN2,SYNGR1,TAB1,TMEM184B,TNRC6B,TOMM22,TRIOBP"
TCGA.CK.5914.01A	22	38284405	38978299	142	-0.5286	SMALL-LOSS	NONFOCAL	18	"BAIAP2L2,C22orf23,CSNK1E,DDX17,DMC1,EIF3L,FAM227A,KCNJ4,KDELR3,LOC400927-CSNK1E,MAFF,MICALL1,PICK1,PLA2G6,POLR2F,SLC16A8,SOX10,TMEM184B"
TCGA.CK.4952.01A	22	38324064	38882001	55	-0.9844	SMALL-LOSS	NONFOCAL	15	"BAIAP2L2,C22orf23,CSNK1E,DDX17,KCNJ4,KDELR3,LOC400927-CSNK1E,MAFF,MICALL1,PICK1,PLA2G6,POLR2F,SLC16A8,SOX10,TMEM184B"
TCGA.DM.A1D0	22	38473384	51186227	4132	-0.8362	SMALL-LOSS	NONFOCAL	166	Too-Many
TCGA.AG.3909.01A	22	38627216	39121972	58	-0.8719	SMALL-LOSS	NONFOCAL	12	"CBY1,CSNK1E,DDX17,DMC1,FAM227A,GTPBP1,JOSD1,KCNJ4,KDELR3,LOC400927-CSNK1E,TMEM184B,TOMM22"
TCGA.AG.3584	22	38815542	51186227	4091	-0.8589	SMALL-LOSS	NONFOCAL	159	Too-Many
TCGA.CK.5914.01A	22	39410280	40080275	123	-0.6145	SMALL-LOSS	NONFOCAL	15	"APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3G,APOBEC3H,ATF4,CACNA1I,CBX7,MGAT3,MIEF1,PDGFB,RPL3,RPS19BP1,SYNGR1,TAB1"
TCGA.AM.5820	22	40091546	42654326	417	-0.7543	SMALL-LOSS	NONFOCAL	43	"ACO2,ADSL,C22orf46,CCDC134,CENPM,CHADL,CSDC2,CYP2D6,DESI1,DNAJB7,ENTHD1,EP300,FAM109B,FAM83F,GRAP2,L3MBTL2,MCHR1,MEI1,MKL1,NAGA,NDUFA6,NHP2L1,PHF5A,PMM1,POLR3H,RANGAP1,RBX1,SEPT3,SGSM3,SHISA8,SLC25A17,SMDT1,SREBF2,ST13,TCF20,TEF,TNFRSF13C,TNRC6B,TOB2,WBP2NL,XPNPEP3,XRCC6,ZC3H7B"
TCGA.AD.6965	22	40325160	51186227	3773	-0.7198	SMALL-LOSS	NONFOCAL	127	Too-Many
TCGA.AF.2693	22	40328990	51186227	3775	-0.6713	SMALL-LOSS	NONFOCAL	127	Too-Many
TCGA.DY.A1H8	22	41132401	51186227	3637	-0.9622	SMALL-LOSS	NONFOCAL	120	Too-Many
TCGA.D5.6923	22	42463365	51186227	3422	-0.6242	SMALL-LOSS	NONFOCAL	91	"A4GALT,ACR,ADM2,ALG12,ARFGAP3,ARHGAP8,ARSA,ATP5L2,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,CYB5R3,CYP2D6,DENND6B,EFCAB6,FAM109B,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NAGA,NCAPH2,NDUFA6,NFAM1,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,POLDIP3,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,RRP7A,SAMM50,SBF1,SCO2,SCUBE1,SELO,SERHL2,SHANK3,SMC1B,SMDT1,SULT4A1,SYCE3,TBC1D22A,TCF20,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.DC.6160.01A	22	42500084	49570460	717	-0.6022	SMALL-LOSS	NONFOCAL	52	"A4GALT,ARFGAP3,ARHGAP8,ATP5L2,ATXN10,BIK,CDPF1,CELSR1,CERK,CYB5R3,CYP2D6,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,KIAA0930,KIAA1644,LDOC1L,MCAT,MPPED1,NFAM1,NUP50,PACSIN2,PARVB,PARVG,PHF21B,PKDREJ,PNPLA3,PNPLA5,POLDIP3,PPARA,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,RRP7A,SAMM50,SCUBE1,SERHL2,SMC1B,SULT4A1,TBC1D22A,TCF20,TRMU,TSPO,TTC38,TTLL1,TTLL12,UPK3A,WNT7B"
TCGA.A6.5665	22	42670964	51186227	3384	-0.747	SMALL-LOSS	NONFOCAL	85	"A4GALT,ACR,ADM2,ALG12,ARFGAP3,ARHGAP8,ARSA,ATP5L2,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,CYB5R3,DENND6B,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NCAPH2,NFAM1,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,POLDIP3,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,RRP7A,SAMM50,SBF1,SCO2,SCUBE1,SELO,SERHL2,SHANK3,SMC1B,SULT4A1,SYCE3,TBC1D22A,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.A6.3808.01A	22	42952457	43930541	117	-0.5979	SMALL-LOSS	NONFOCAL	15	"A4GALT,ARFGAP3,ATP5L2,BIK,CYB5R3,EFCAB6,MCAT,MPPED1,PACSIN2,POLDIP3,SCUBE1,SERHL2,TSPO,TTLL1,TTLL12"
TCGA.A6.5661	22	43400005	51186227	3187	-1.0125	SMALL-LOSS	NONFOCAL	77	"ACR,ADM2,ALG12,ARHGAP8,ARSA,ATXN10,BIK,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,EFCAB6,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MCAT,MIOX,MLC1,MOV10L1,MPPED1,NCAPH2,NUP50,ODF3B,PACSIN2,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PNPLA3,PNPLA5,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SBF1,SCO2,SCUBE1,SELO,SHANK3,SMC1B,SULT4A1,SYCE3,TBC1D22A,TRABD,TRMU,TSPO,TTC38,TTLL1,TTLL12,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.AA.3862.01A	22	43537114	44594452	134	-0.8605	SMALL-LOSS	NONFOCAL	12	"EFCAB6,MCAT,MPPED1,PARVB,PARVG,PNPLA3,PNPLA5,SAMM50,SCUBE1,SULT4A1,TSPO,TTLL12"
TCGA.AA.3861.01A	22	43563100	45571733	172	-0.68	SMALL-LOSS	NONFOCAL	17	"ARHGAP8,EFCAB6,KIAA1644,LDOC1L,MPPED1,NUP50,PARVB,PARVG,PHF21B,PNPLA3,PNPLA5,PRR5,PRR5-ARHGAP8,SAMM50,SCUBE1,SULT4A1,TTLL12"
TCGA.A6.A56B	22	44391685	51186227	2826	-0.6007	SMALL-LOSS	NONFOCAL	65	"ACR,ADM2,ALG12,ARHGAP8,ARSA,ATXN10,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,NUP50,ODF3B,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SAMM50,SBF1,SCO2,SELO,SHANK3,SMC1B,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.AG.3731	22	44408099	51186227	2837	-0.7079	SMALL-LOSS	NONFOCAL	64	"ACR,ADM2,ALG12,ARHGAP8,ARSA,ATXN10,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KIAA1644,KLHDC7B,LDOC1L,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,NUP50,ODF3B,PANX2,PARVB,PARVG,PHF21B,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SBF1,SCO2,SELO,SHANK3,SMC1B,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.EI.6508	22	45099825	46554767	516	-0.8682	SMALL-LOSS	NONFOCAL	15	"ARHGAP8,ATXN10,FAM118A,FBLN1,KIAA0930,NUP50,PHF21B,PPARA,PRR34,PRR5,PRR5-ARHGAP8,RIBC2,SMC1B,UPK3A,WNT7B"
TCGA.DM.A285	22	45253871	46266330	405	-0.6972	SMALL-LOSS	NONFOCAL	11	"ARHGAP8,ATXN10,FAM118A,FBLN1,KIAA0930,NUP50,PHF21B,PRR5-ARHGAP8,RIBC2,SMC1B,UPK3A"
TCGA.AG.A02X.01A	22	45278944	51220568	362	-0.9598	SMALL-LOSS	NONFOCAL	58	"ACR,ADM2,ALG12,ARSA,ATXN10,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM118A,FAM19A5,FBLN1,GRAMD4,GTSE1,HDAC10,IL17REL,KIAA0930,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,NUP50,ODF3B,PANX2,PHF21B,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,PRR34,RABL2B,RIBC2,SBF1,SCO2,SELO,SHANK3,SMC1B,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,UPK3A,WNT7B,ZBED4"
TCGA.A6.3808.01A	22	46367979	50302855	185	-0.722	SMALL-LOSS	NONFOCAL	17	"ALG12,BRD1,C22orf34,CDPF1,CELSR1,CERK,FAM19A5,GRAMD4,GTSE1,PKDREJ,PPARA,PRR34,TBC1D22A,TRMU,TTC38,WNT7B,ZBED4"
TCGA.AZ.4614	22	46494797	51186227	1974	-0.9054	SMALL-LOSS	NONFOCAL	46	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CDPF1,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,GTSE1,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PKDREJ,PLXNB2,PPARA,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TRMU,TTC38,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3930.01A	22	46746176	51223594	392	-0.6642	SMALL-LOSS	NONFOCAL	42	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,RABL2B,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TRMU,TUBGCP6,TYMP,ZBED4"
TCGA.AA.A00N.01A	22	46751304	51223594	434	-0.6186	SMALL-LOSS	NONFOCAL	42	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,RABL2B,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TRMU,TUBGCP6,TYMP,ZBED4"
TCGA.CK.5914.01A	22	46751304	51223594	433	-0.6275	SMALL-LOSS	NONFOCAL	42	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CELSR1,CERK,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,GRAMD4,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,RABL2B,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TRMU,TUBGCP6,TYMP,ZBED4"
TCGA.CA.5254	22	47302583	51186227	1718	-0.5801	SMALL-LOSS	NONFOCAL	37	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TBC1D22A,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AA.3561	22	48843194	51186227	870	-0.8979	SMALL-LOSS	NONFOCAL	36	"ACR,ADM2,ALG12,ARSA,BRD1,C22orf34,CHKB,CPT1B,CRELD2,DENND6B,FAM19A5,HDAC10,IL17REL,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MLC1,MOV10L1,NCAPH2,ODF3B,PANX2,PIM3,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP,ZBED4"
TCGA.AF.3913	22	50537900	51186227	114	-0.6425	SMALL-LOSS	NONFOCAL	27	"ACR,ADM2,ARSA,CHKB,CPT1B,DENND6B,HDAC10,KLHDC7B,LMF2,MAPK11,MAPK12,MAPK8IP2,MIOX,MOV10L1,NCAPH2,ODF3B,PANX2,PLXNB2,PPP6R2,SBF1,SCO2,SELO,SHANK3,SYCE3,TRABD,TUBGCP6,TYMP"
TCGA.A6.3810.01A	22	50726364	51223594	159	-0.5633	SMALL-LOSS	NONFOCAL	20	"ACR,ADM2,ARSA,CHKB,CPT1B,DENND6B,KLHDC7B,LMF2,MAPK8IP2,MIOX,NCAPH2,ODF3B,PLXNB2,PPP6R2,RABL2B,SBF1,SCO2,SHANK3,SYCE3,TYMP"
TCGA.A6.3808.01A	22	50755696	51223594	148	-1.0225	SMALL-LOSS	NONFOCAL	19	"ACR,ADM2,ARSA,CHKB,CPT1B,DENND6B,KLHDC7B,LMF2,MAPK8IP2,MIOX,NCAPH2,ODF3B,PPP6R2,RABL2B,SBF1,SCO2,SHANK3,SYCE3,TYMP"
TCGA.AF.3914.01A	22	50897637	51178175	83	-0.8993	SMALL-LOSS	NONFOCAL	16	"ACR,ADM2,ARSA,CHKB,CPT1B,KLHDC7B,LMF2,MAPK8IP2,MIOX,NCAPH2,ODF3B,SBF1,SCO2,SHANK3,SYCE3,TYMP"
TCGA.CK.5914.01A	23	200803	1746559	81	-1.0679	SMALL-LOSS	NONFOCAL	12	"AKAP17A,ASMT,ASMTL,CRLF2,CSF2RA,GTPBP6,IL3RA,P2RY8,PLCXD1,PPP2R3B,SHOX,SLC25A6"
TCGA.AA.A02F.01A	23	200803	153590310	5381	-0.6992	SMALL-LOSS	NONFOCAL	786	Too-Many
TCGA.A6.A56B	23	2703632	7265934	1746	-0.5828	SMALL-LOSS	NONFOCAL	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.DC.4745	23	2703632	7364172	1805	-0.9625	SMALL-LOSS	NONFOCAL	12	"ARSD,ARSE,ARSF,ARSH,GYG2,HDHD1,MXRA5,NLGN4X,PRKX,STS,VCX3A,XG"
TCGA.AZ.4323	23	2703632	11170587	3055	-0.56	SMALL-LOSS	NONFOCAL	28	"ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,CLCN4,CLDN34,FAM9A,FAM9B,GPR143,GYG2,HCCS,HDHD1,MID1,MXRA5,NLGN4X,PNPLA4,PRKX,SHROOM2,STS,TBL1X,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.AA.3811	23	2703632	14636593	4410	-0.5884	SMALL-LOSS	NONFOCAL	45	"AMELX,ANOS1,ARHGAP6,ARSD,ARSE,ARSF,ARSH,ATXN3L,CLCN4,CLDN34,EGFL6,FAM9A,FAM9B,FAM9C,FRMPD4,GEMIN8,GLRA2,GPM6B,GPR143,GYG2,HCCS,HDHD1,MID1,MSL3,MXRA5,NLGN4X,OFD1,PNPLA4,PRKX,PRPS2,RAB9A,SHROOM2,STS,TBL1X,TCEANC,TLR7,TLR8,TMSB4X,TRAPPC2,VCX,VCX2,VCX3A,VCX3B,WWC3,XG"
TCGA.AZ.4614	23	2703632	44931696	12497	-0.8402	SMALL-LOSS	NONFOCAL	162	Too-Many
TCGA.DM.A285	23	2703632	54754548	13961	-0.5446	SMALL-LOSS	NONFOCAL	290	Too-Many
TCGA.AA.3860	23	2703632	57152958	14438	-0.6292	SMALL-LOSS	NONFOCAL	310	Too-Many
TCGA.AA.3496	23	2703632	154925044	35501	-0.6578	SMALL-LOSS	NONFOCAL	808	Too-Many
TCGA.AA.3845	23	2703632	154925044	35606	-0.5543	SMALL-LOSS	NONFOCAL	808	Too-Many
TCGA.AG.3727	23	2703632	154925044	35663	-0.7965	SMALL-LOSS	NONFOCAL	808	Too-Many
TCGA.AZ.6598	23	2703632	154925044	35635	-0.7369	SMALL-LOSS	NONFOCAL	808	Too-Many
TCGA.CM.5341	23	2703632	154925044	35627	-0.5529	SMALL-LOSS	NONFOCAL	808	Too-Many
TCGA.DY.A1DC	23	2703632	154925044	35488	-0.6198	SMALL-LOSS	NONFOCAL	808	Too-Many
TCGA.G4.6295	23	2703632	154925044	35634	-1.0903	SMALL-LOSS	NONFOCAL	808	Too-Many
TCGA.A6.A56B	23	7681524	44582706	10486	-0.6443	SMALL-LOSS	NONFOCAL	148	Too-Many
TCGA.AA.3811	23	14659635	25546603	2825	-0.628	SMALL-LOSS	NONFOCAL	63	"ACE2,ACOT9,ADGRG2,AP1S2,APOO,ARX,ASB11,ASB9,BEND2,BMX,CA5B,CDKL5,CNKSR2,CTPS2,CXorf23,CXorf58,DDX53,EIF1AX,EIF2S3,FANCB,FIGF,GLRA2,GRPR,KLHL15,KLHL34,MAGEB17,MAP3K15,MAP7D2,MBTPS2,MOSPD2,NHS,PCYT1B,PDHA1,PDK3,PHEX,PHKA2,PIGA,PIR,POLA1,PPEF1,PRDX4,PTCHD1,RAI2,RBBP7,REPS2,RPS6KA3,RS1,S100G,SAT1,SCML1,SCML2,SH3KBP1,SMPX,SMS,SUPT20HL1,SUPT20HL2,SYAP1,TMEM27,TXLNG,YY2,ZFX,ZNF645,ZRSR2"
TCGA.CM.6172	23	15528368	49605524	8657	-0.6302	SMALL-LOSS	NONFOCAL	199	Too-Many
TCGA.A6.3808.01A	23	25033651	30864040	59	-0.8946	SMALL-LOSS	NONFOCAL	16	"ARX,CXorf21,DCAF8L1,DCAF8L2,GK,IL1RAPL1,MAGEB1,MAGEB10,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,TAB3"
TCGA.AA.3811	23	25546684	38044750	3637	-0.9737	SMALL-LOSS	NONFOCAL	32	"CFAP47,CXorf21,CYBB,DCAF8L1,DCAF8L2,DMD,DYNLT3,FAM47A,FAM47B,FAM47C,FTH1P18,FTHL17,GK,HYPM,IL1RAPL1,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,NR0B1,PRRG1,SRPX,SYTL5,TAB3,TMEM47,XK"
TCGA.AG.A01Y	23	25898477	154925044	28183	-0.7434	SMALL-LOSS	NONFOCAL	701	Too-Many
TCGA.AA.3850	23	31608474	37621103	1684	-1.00005	SMALL-LOSS	NONFOCAL	11	"CFAP47,DMD,FAM47A,FAM47B,FAM47C,FTH1P18,LANCL3,MAGEB16,PRRG1,TMEM47,XK"
TCGA.AG.3591	23	33706108	51438170	3914	-0.7488	SMALL-LOSS	NONFOCAL	137	Too-Many
TCGA.AA.3811	23	38053108	49408034	2443	-0.5156	SMALL-LOSS	NONFOCAL	111	Too-Many
TCGA.A6.3808.01A	23	38144772	41069724	122	-0.5181	SMALL-LOSS	NONFOCAL	11	"ATP6AP2,BCOR,CXorf38,MED14,MED14OS,MID1IP1,MPC1L,OTC,RPGR,TSPAN7,USP9X"
TCGA.AG.4021	23	41639336	79032324	5287	-0.745	SMALL-LOSS	NONFOCAL	250	Too-Many
TCGA.AG.3612	23	41721854	48069221	1302	-0.6002	SMALL-LOSS	NONFOCAL	35	"ARAF,CASK,CDK16,CFP,CHST7,CXorf36,DUSP21,EFHC2,ELK1,FUNDC1,JADE3,KDM6A,KRBOX4,MAOA,MAOB,NDP,NDUFB11,RBM10,RGN,RP2,SLC9A7,SPACA5,SPACA5B,SSX5,SYN1,TIMP1,UBA1,USP11,UXT,ZNF157,ZNF182,ZNF41,ZNF630,ZNF674,ZNF81"
TCGA.AZ.4614	23	47010323	51440951	713	-0.855	SMALL-LOSS	NONFOCAL	90	"AKAP4,ARAF,BMP15,CACNA1F,CCDC120,CCDC22,CCNB3,CDK16,CFP,CLCN5,CXorf67,DGKK,EBP,ELK1,ERAS,FOXP3,FTSJ1,GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8,GATA1,GLOD5,GPKOW,GRIPAP1,HDAC6,KCND1,MAGIX,NUDT10,NUDT11,OTUD5,PAGE1,PAGE4,PCSK1N,PIM2,PLP2,PORCN,PPP1R3F,PQBP1,PRAF2,PRICKLE3,RBM10,RBM3,SHROOM4,SLC35A2,SLC38A5,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SUV39H1,SYN1,SYP,TBC1D25,TFE3,TIMM17B,TIMP1,UBA1,USP11,USP27X,UXT,WAS,WDR13,WDR45,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.AA.A010.01A	23	47092264	48244046	113	-0.5886	SMALL-LOSS	NONFOCAL	19	"ARAF,CFP,ELK1,SPACA5,SPACA5B,SSX1,SSX3,SSX4,SSX4B,SSX5,SYN1,TIMP1,USP11,UXT,ZNF157,ZNF182,ZNF41,ZNF630,ZNF81"
TCGA.AG.3909.01A	23	48337369	48780402	84	-0.6251	SMALL-LOSS	NONFOCAL	18	"EBP,ERAS,FTSJ1,GATA1,GLOD5,HDAC6,OTUD5,PCSK1N,PIM2,PORCN,PQBP1,RBM3,SLC35A2,SUV39H1,TBC1D25,TIMM17B,WAS,WDR13"
TCGA.AA.A00N.01A	23	49161343	49370581	4	-1.3203	SMALL-LOSS	NONFOCAL	22	"GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8"
TCGA.AG.3909.01A	23	49161343	49370581	4	-1.1947	SMALL-LOSS	NONFOCAL	22	"GAGE1,GAGE10,GAGE12B,GAGE12C,GAGE12D,GAGE12E,GAGE12F,GAGE12G,GAGE12H,GAGE12I,GAGE12J,GAGE13,GAGE2A,GAGE2B,GAGE2C,GAGE2D,GAGE2E,GAGE4,GAGE5,GAGE6,GAGE7,GAGE8"
TCGA.AA.3811	23	49421053	58496484	1256	-0.8532	SMALL-LOSS	NONFOCAL	65	"AKAP4,ALAS2,APEX2,BMP15,CCNB3,CLCN5,CXorf67,DGKK,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,GSPT2,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED1,MAGED2,MAGED4,MAGED4B,MAGEH1,MTRNR2L10,NUDT10,NUDT11,PAGE1,PAGE2,PAGE2B,PAGE3,PAGE4,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SHROOM4,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP27X,USP51,WNK3,XAGE1B,XAGE1E,XAGE2,XAGE3,XAGE5,ZXDA,ZXDB"
TCGA.AG.3591	23	52573821	57615049	701	-0.7224	SMALL-LOSS	NONFOCAL	44	"ALAS2,APEX2,FAAH2,FAM104B,FAM120C,FAM156A,FAM156B,FGD1,FOXR2,GNL3L,GPR173,HSD17B10,HUWE1,IQSEC2,ITIH6,KDM5C,KLF8,MAGED2,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RIBC1,RRAGB,SMC1A,SPANXN5,SPIN2A,SPIN2B,SPIN3,SSX2,SSX2B,SSX7,TRO,TSPYL2,TSR2,UBQLN2,USP51,WNK3,XAGE3,XAGE5"
TCGA.CM.6172	23	52843648	154925044	21813	-0.6195	SMALL-LOSS	NONFOCAL	536	Too-Many
TCGA.AA.A010.01A	23	55513200	64754333	99	-0.5552	SMALL-LOSS	NONFOCAL	19	"AMER1,ARHGEF9,ASB12,FAAH2,FOXR2,KLF8,LAS1L,MTMR8,RRAGB,SPIN2A,SPIN2B,SPIN3,SPIN4,UBQLN2,USP51,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AA.3941	23	57306179	66975422	739	-0.5419	SMALL-LOSS	NONFOCAL	16	"AMER1,AR,ARHGEF9,ASB12,EDA2R,FAAH2,HEPH,LAS1L,MSN,MTMR8,SPIN4,VSIG4,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AA.3850	23	57317704	67385999	821	-1.00075	SMALL-LOSS	NONFOCAL	17	"AMER1,AR,ARHGEF9,ASB12,EDA2R,FAAH2,HEPH,LAS1L,MSN,MTMR8,OPHN1,SPIN4,VSIG4,ZC3H12B,ZC4H2,ZXDA,ZXDB"
TCGA.AG.A032.01A	23	62569902	101908791	1148	-0.5156	SMALL-LOSS	NONFOCAL	151	Too-Many
TCGA.AG.3591	23	62583627	76437472	2195	-0.7166	SMALL-LOSS	NONFOCAL	75	"ABCB7,ACRC,AMER1,AR,ARHGEF9,ARR3,ASB12,AWAT1,AWAT2,CDX4,CHIC1,CITED1,CXCR3,CXorf49,CXorf49B,CXorf65,DGAT2L6,DLG3,DMRTC1,DMRTC1B,EDA,EDA2R,EFNB1,ERCC6L,FAM155B,FLJ44635,FOXO4,GDPD2,GJB1,HDAC8,HEPH,IGBP1,IL2RG,ITGB1BP2,KIAA2022,KIF4A,LAS1L,MAGEE1,MAGEE2,MED12,MSN,MTMR8,NAP1L2,NHSL2,NLGN3,NONO,OGT,OPHN1,OTUD6A,P2RY4,PABPC1L2A,PABPC1L2B,PBDC1,PDZD11,PHKA1,PIN4,PJA1,RAB41,RGAG4,RLIM,RPS4X,SLC16A2,SLC7A3,SNX12,STARD8,TAF1,TEX11,UPRT,VSIG4,YIPF6,ZC3H12B,ZC4H2,ZCCHC13,ZDHHC15,ZMYM3"
TCGA.AY.5543	23	65367569	154925044	20632	-0.5708	SMALL-LOSS	NONFOCAL	484	Too-Many
TCGA.AA.A02H.01A	23	69489178	71495948	311	-0.5356	SMALL-LOSS	NONFOCAL	30	"ACRC,ARR3,CXCR3,CXorf49,CXorf49B,CXorf65,DLG3,ERCC6L,FLJ44635,FOXO4,GDPD2,GJB1,IL2RG,ITGB1BP2,KIF4A,MED12,NHSL2,NLGN3,NONO,OGT,PDZD11,PIN4,RAB41,RGAG4,RPS4X,SLC7A3,SNX12,TAF1,TEX11,ZMYM3"
TCGA.AA.A00N.01A	23	70779089	71549817	57	-0.881	SMALL-LOSS	NONFOCAL	13	"ACRC,CITED1,CXCR3,CXorf49,CXorf49B,ERCC6L,FLJ44635,HDAC8,NHSL2,OGT,PIN4,RGAG4,RPS4X"
TCGA.AA.3811	23	71593010	94492627	4509	-0.5745	SMALL-LOSS	NONFOCAL	55	"ABCB7,APOOL,ATP7A,ATRX,BRWD3,CDX4,CHIC1,CHM,COX7B,CPXCR1,CYLC1,CYSLTR1,DACH2,DMRTC1,DMRTC1B,FAM133A,FAM46D,FGF16,GPR174,HDAC8,HDX,HMGN5,ITM2A,KIAA2022,KLHL4,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L2,NAP1L3,P2RY10,PABPC1L2A,PABPC1L2B,PABPC5,PBDC1,PCDH11X,PGAM4,PGK1,PHKA1,POF1B,POU3F4,RLIM,RPS6KA6,SATL1,SH3BGRL,SLC16A2,TAF9B,TBX22,TGIF2LX,UPRT,ZCCHC13,ZCCHC5,ZDHHC15,ZNF711"
TCGA.AA.3966	23	71954758	154925044	19499	-0.6003	SMALL-LOSS	NONFOCAL	435	Too-Many
TCGA.AA.A010.01A	23	72347361	76871913	93	-0.6317	SMALL-LOSS	NONFOCAL	15	"ABCB7,ATRX,CDX4,CHIC1,FGF16,KIAA2022,MAGEE1,MAGEE2,NAP1L2,PBDC1,RLIM,SLC16A2,UPRT,ZCCHC13,ZDHHC15"
TCGA.AA.3850	23	74157283	97285127	4905	-0.75805	SMALL-LOSS	NONFOCAL	44	"ABCB7,APOOL,ATP7A,ATRX,BRWD3,CHM,COX7B,CPXCR1,CYLC1,CYSLTR1,DACH2,DIAPH2,FAM133A,FAM46D,FGF16,GPR174,HDX,HMGN5,ITM2A,KLHL4,LPAR4,MAGEE1,MAGEE2,MAGT1,NAP1L3,P2RY10,PABPC5,PBDC1,PCDH11X,PGAM4,PGK1,POF1B,POU3F4,RPA4,RPS6KA6,SATL1,SH3BGRL,TAF9B,TBX22,TGIF2LX,UPRT,ZCCHC5,ZDHHC15,ZNF711"
TCGA.AG.3591	23	78333341	154925044	18702	-0.7246	SMALL-LOSS	NONFOCAL	406	Too-Many
TCGA.AG.4021	23	79039512	154925044	18446	-0.7479	SMALL-LOSS	NONFOCAL	404	Too-Many
TCGA.AA.A00N.01A	23	101381775	102757203	48	-0.7846	SMALL-LOSS	NONFOCAL	23	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BEX5,BHLHB9,GPRASP1,GPRASP2,NGFRAP1,NXF2,NXF2B,NXF3,RAB40A,RAB40AL,TCEAL2,TCEAL5,TCEAL6,TCEAL7,TCEAL8,TCP11X2,TMSB15A,WBP5"
TCGA.CK.5914.01A	23	101634850	102757203	36	-0.5819	SMALL-LOSS	NONFOCAL	20	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,GPRASP1,GPRASP2,NGFRAP1,NXF2,NXF2B,NXF3,RAB40A,RAB40AL,TCEAL5,TCEAL7,TCEAL8,TCP11X2,TMSB15A,WBP5"
TCGA.AG.3909.01A	23	101768947	102754799	31	-1.1956	SMALL-LOSS	NONFOCAL	17	"ARMCX5,ARMCX5-GPRASP2,BEX1,BEX2,BEX4,BHLHB9,GPRASP1,GPRASP2,NGFRAP1,NXF3,RAB40A,RAB40AL,TCEAL5,TCEAL7,TCEAL8,TMSB15A,WBP5"
TCGA.AA.A010.01A	23	103903535	106219776	107	-0.5783	SMALL-LOSS	NONFOCAL	11	"CLDN2,CXorf57,IL1RAPL2,MORC4,MUM1L1,NRK,RIPPLY1,RNF128,SERPINA7,TBC1D8B,TEX13A"
TCGA.AA.3850	23	105825676	111585663	1149	-0.75815	SMALL-LOSS	NONFOCAL	35	"ACSL4,ALG13,AMMECR1,ATG4A,CAPN6,CHRDL1,CLDN2,COL4A5,COL4A6,CXorf57,DCX,FRMPD3,GUCY2F,IRS4,KCNE5,MID2,MORC4,NUP62CL,NXT2,PAK3,PIH1D3,PRPS1,PSMD10,RBM41,RGAG1,RIPPLY1,RNF128,TBC1D8B,TEX13B,TMEM164,TRPC5,TRPC5OS,TSC22D3,VSIG1,ZCCHC16"
TCGA.AA.A010.01A	23	108636089	114418927	178	-0.6764	SMALL-LOSS	NONFOCAL	20	"ACSL4,ALG13,AMMECR1,AMOT,CAPN6,CHRDL1,DCX,GUCY2F,HTR2C,IL13RA2,KCNE5,LHFPL1,LRCH2,NXT2,PAK3,RGAG1,TMEM164,TRPC5,TRPC5OS,ZCCHC16"
TCGA.AG.3909.01A	23	117874933	118750604	65	-0.6242	SMALL-LOSS	NONFOCAL	11	"CXorf56,IL13RA1,KIAA1210,LONRF3,NKRF,PGRMC1,SEPT6,SLC25A43,SLC25A5,UBE2A,ZCCHC12"
TCGA.AA.A017.01A	23	118678298	119438157	76	-0.5147	SMALL-LOSS	NONFOCAL	16	"AKAP14,CXorf56,NDUFA1,NKAP,NKRF,RHOXF1,RHOXF2,RHOXF2B,RNF113A,RPL39,SEPT6,SOWAHD,TMEM255A,UBE2A,UPF3B,ZBTB33"
TCGA.AA.3850	23	119911491	121613015	465	-0.77055	SMALL-LOSS	NONFOCAL	14	"CT47A1,CT47A10,CT47A11,CT47A12,CT47A2,CT47A3,CT47A4,CT47A5,CT47A6,CT47A7,CT47A8,CT47A9,CT47B1,GLUD2"
TCGA.EI.6510	23	129337830	152177416	6360	-0.7877	SMALL-LOSS	NONFOCAL	125	Too-Many
TCGA.AA.A010.01A	23	131188642	134025457	96	-0.7975	SMALL-LOSS	NONFOCAL	16	"CCDC160,FAM122B,FAM122C,FRMD7,GPC3,GPC4,HPRT1,HS6ST2,MBNL3,MOSPD1,PHF6,PLAC1,RAP2C,STK26,TFDP3,USP26"
TCGA.A6.3808.01A	23	133119294	135056724	103	-0.9483	SMALL-LOSS	NONFOCAL	28	"CCDC160,CT45A1,CT45A10,CT45A2,CT45A3,CT45A4,CT45A5,CT45A6,CT45A7,CT45A8,CT45A9,CT55,DDX26B,FAM122B,FAM122C,FAM127A,FAM127B,FAM127C,GPC3,HPRT1,MMGT1,MOSPD1,PHF6,PLAC1,SAGE1,SMIM10,ZNF449,ZNF75D"
TCGA.AA.3850	23	137028863	143874772	2155	-0.85065	SMALL-LOSS	NONFOCAL	22	"ATP11C,CDR1,CXorf66,F9,FGF13,LDOC1,LOC389895,MAGEC1,MAGEC2,MAGEC3,MCF2,SLITRK4,SOX3,SPANXA1,SPANXA2,SPANXB1,SPANXC,SPANXD,SPANXN2,SPANXN3,SPANXN4,UBE2NL"
TCGA.AA.A010.01A	23	147017971	149828831	80	-0.9358	SMALL-LOSS	NONFOCAL	15	"AFF2,CXorf40A,CXorf40B,FMR1,FMR1NB,HSFX1,HSFX2,IDS,MAGEA11,MAGEA8,MAGEA9,MAGEA9B,MAMLD1,MTM1,TMEM185A"
TCGA.A6.5661	23	148595212	154925044	1420	-0.536	SMALL-LOSS	NONFOCAL	110	Too-Many
TCGA.AA.A010.01A	23	150891071	152037387	63	-0.5852	SMALL-LOSS	NONFOCAL	18	"CETN2,CNGA2,CSAG1,CSAG3,FATE1,GABRA3,GABRE,GABRQ,MAGEA10,MAGEA10-MAGEA5,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA5,MAGEA6,NSDHL"
TCGA.AG.A016.01A	23	151813934	152101365	32	-0.5481	SMALL-LOSS	NONFOCAL	11	"CETN2,CSAG1,CSAG3,GABRQ,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA6,NSDHL,ZNF185"
TCGA.AG.3909.01A	23	152128231	152815461	39	-0.8626	SMALL-LOSS	NONFOCAL	11	"ATP2B3,BGN,HAUS7,MAGEA1,PNMA3,PNMA5,PNMA6A,TREX2,ZFP92,ZNF185,ZNF275"
TCGA.A6.3808.01A	23	152158746	152953993	68	-1.0963	SMALL-LOSS	NONFOCAL	14	"ATP2B3,BGN,DUSP9,FAM58A,HAUS7,MAGEA1,PNCK,PNMA3,PNMA5,PNMA6A,SLC6A8,TREX2,ZFP92,ZNF275"
TCGA.A6.6141	23	152567637	153887203	188	-0.5521	SMALL-LOSS	NONFOCAL	49	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,CTAG1A,CTAG1B,CTAG2,DNASE1L1,DUSP9,EMD,FAM3A,FAM50A,FAM58A,FLNA,G6PD,GDI1,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,RENBP,RPL10,SLC10A3,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,TREX2,UBL4A,ZFP92,ZNF275"
TCGA.CM.6168	23	152713152	153713096	138	-0.5163	SMALL-LOSS	NONFOCAL	39	"ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,DNASE1L1,DUSP9,EMD,FAM50A,FAM58A,FLNA,GDI1,HAUS7,HCFC1,IDH3G,IRAK1,L1CAM,LAGE3,MECP2,NAA10,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,RENBP,RPL10,SLC6A8,SRPK3,SSR4,TAZ,TEX28,TKTL1,TMEM187,UBL4A"
TCGA.AA.A00N.01A	23	153540919	153908362	129	-0.7566	SMALL-LOSS	NONFOCAL	20	"ATP6AP1,CTAG1A,CTAG1B,CTAG2,DNASE1L1,EMD,FAM3A,FAM50A,FLNA,G6PD,GAB3,GDI1,IKBKG,LAGE3,PLXNA3,RPL10,SLC10A3,TAZ,TKTL1,UBL4A"
TCGA.AG.3605.01A	23	153594365	154004444	4	-0.5647	SMALL-LOSS	NONFOCAL	20	"ATP6AP1,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,EMD,FAM3A,FAM50A,FLNA,G6PD,GAB3,GDI1,IKBKG,LAGE3,PLXNA3,RPL10,SLC10A3,TAZ,UBL4A"
TCGA.AA.A02F.01A	23	153641790	155239443	158	-0.6142	SMALL-LOSS	NONFOCAL	36	"ATP6AP1,BRCC3,CLIC2,CMC4,CTAG1A,CTAG1B,CTAG2,DKC1,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FUNDC2,G6PD,GAB3,GDI1,H2AFB1,H2AFB2,H2AFB3,IKBKG,IL9R,LAGE3,MPP1,MTCP1,PLXNA3,RAB39B,SLC10A3,SMIM9,SPRY3,TAZ,TMLHE,UBL4A,VAMP7,VBP1"
TCGA.AA.3850	23	154031009	154925044	80	-0.57195	SMALL-LOSS	NONFOCAL	18	"BRCC3,CLIC2,CMC4,F8,F8A1,F8A2,F8A3,FUNDC2,H2AFB1,H2AFB2,H2AFB3,MPP1,MTCP1,RAB39B,SMIM9,SPRY3,TMLHE,VBP1"
TCGA.AA.A00L.01A	24	2654981	16952303	137	-1.3017	SMALL-LOSS	NONFOCAL	20	"AMELY,DDX3Y,NLGN4Y,PCDH11Y,RPS4Y1,SRY,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,ZFY"
TCGA.DC.6160.01A	24	2714981	25599433	193	-1.24	SMALL-LOSS	NONFOCAL	45	"AMELY,BPY2,BPY2B,BPY2C,CD24,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PCDH11Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y1,RPS4Y2,TBL1Y,TGIF2LY,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2,ZFY"
TCGA.AG.3906.01A	24	4900654	16952303	2	-1.1931	SMALL-LOSS	NONFOCAL	16	"AMELY,DDX3Y,NLGN4Y,PCDH11Y,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B"
TCGA.AG.A015.01A	24	4900654	16952303	3	-0.5518	SMALL-LOSS	NONFOCAL	16	"AMELY,DDX3Y,NLGN4Y,PCDH11Y,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B"
TCGA.F5.6811.01A	24	5026209	19613740	3	-0.6399	SMALL-LOSS	NONFOCAL	16	"AMELY,DDX3Y,NLGN4Y,PCDH11Y,TBL1Y,TMSB4Y,TSPY1,TSPY10,TSPY2,TSPY3,TSPY4,TSPY8,USP9Y,UTY,VCY,VCY1B"
TCGA.AA.3939.01A	24	14532021	27190045	141	-0.6461	SMALL-LOSS	NONFOCAL	35	"BPY2,BPY2B,BPY2C,CD24,CDY1,CDY1B,CDY2A,CDY2B,DAZ1,DAZ2,DAZ3,DAZ4,DDX3Y,EIF1AY,HSFY1,HSFY2,KDM5D,NLGN4Y,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2,TMSB4Y,USP9Y,UTY,VCY,VCY1B,XKRY,XKRY2"
TCGA.AA.A00L.01A	24	22741437	27768623	14	-1.0013	SMALL-LOSS	NONFOCAL	20	"BPY2,BPY2B,BPY2C,CDY1,CDY1B,DAZ1,DAZ2,DAZ3,DAZ4,EIF1AY,PRORY,PRY,PRY2,RBMY1A1,RBMY1B,RBMY1D,RBMY1E,RBMY1F,RBMY1J,RPS4Y2"